BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA
[Candidatus Liberibacter asiaticus str. psy62]
         (731 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040849|gb|ACT57645.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 731

 Score = 1509 bits (3907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 731/731 (100%), Positives = 731/731 (100%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH
Sbjct: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK
Sbjct: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN
Sbjct: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240
           IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV
Sbjct: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID
Sbjct: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP
Sbjct: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE
Sbjct: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA
Sbjct: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD
Sbjct: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR
Sbjct: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK
Sbjct: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ
Sbjct: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720

Query: 721 YNTTLRIHDDD 731
           YNTTLRIHDDD
Sbjct: 721 YNTTLRIHDDD 731


>gi|315122567|ref|YP_004063056.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495969|gb|ADR52568.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 739

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/725 (67%), Positives = 582/725 (80%), Gaps = 5/725 (0%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M  R+ IPIE LS EQA+KELS L+ EISYHDD YYQ+S+P ILD EYD LK RCDAIA 
Sbjct: 1   MANRKFIPIEELSPEQAKKELSFLQHEISYHDDLYYQHSQPKILDFEYDQLKERCDAIAR 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFP+ A   D NGPLNKIGGE N SLFK+THS P  SLEK   IED+  F+T+IYR  +K
Sbjct: 61  AFPEFASLADSNGPLNKIGGEKNFSLFKITHSPPMRSLEKSHQIEDINYFMTKIYRDLKK 120

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
              NSI FTLEPKIDG  ++IRYE+GKFV+A LRGDG+ GEDVSA I  +  IP+VLS  
Sbjct: 121 DCYNSIVFTLEPKIDGASLSIRYEQGKFVHAGLRGDGYIGEDVSANISMMSIIPQVLSFK 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---ITRYLN 237
           +PEI EVRGE+YISK DF  LN+EM    +K Y+NPRN  +G+LR  N T    I+RYL 
Sbjct: 181 VPEIFEVRGEIYISKKDFFVLNEEMRTTKKKLYSNPRNTVAGLLRSRNQTSKSRISRYLK 240

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           FFVHG+G  SE FA GQYEMLQKMR LGFPVN  ++QA+T  GIVSYY+E   IRS+LPY
Sbjct: 241 FFVHGIGTISEKFADGQYEMLQKMRALGFPVNERIQQAHTLEGIVSYYDETALIRSSLPY 300

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKVD F+LQ+QLGER+RSP W ISHKF++++ ST LL IDIQIGRTG+LTP+AR
Sbjct: 301 DIDGIVYKVDSFTLQQQLGERSRSPIWAISHKFSDEEFSTPLLGIDIQIGRTGMLTPIAR 360

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
            E +N+GG  ++NATLHNE+YIKGLD+SGK++RGGRDIR+GD +LVKRAG+VIPKV D+I
Sbjct: 361 FESINMGGVFVSNATLHNENYIKGLDSSGKIIRGGRDIRIGDMILVKRAGDVIPKVTDVI 420

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + ER  D+Q FSFPS CP+CQS+VVR +NPKTGKL ++H CTGGL C AQQLE LK+FVS
Sbjct: 421 MEERPIDSQMFSFPSSCPVCQSKVVRAVNPKTGKLGSSHYCTGGLMCPAQQLEYLKYFVS 480

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           RDAFNIEGLG++QLDFFFKSEDP+FSIRIPADIFTLQ RQQTS  K+ENI GF  VSVTN
Sbjct: 481 RDAFNIEGLGEKQLDFFFKSEDPSFSIRIPADIFTLQHRQQTSFKKLENIPGFAHVSVTN 540

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           LYDSINKRRNISL+RFIFSLGI HVG EIARSLA++Y SYQNF  EI NI+   ND  +S
Sbjct: 541 LYDSINKRRNISLQRFIFSLGIHHVGIEIARSLAQFYRSYQNFETEIKNILDKKNDADVS 600

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFT 655
           L +V LVGD++AQ+I+ FYQNP N  A+ ALL E+S S+   +++ S  S + NK+LVFT
Sbjct: 601 LKKVALVGDMVAQSIIAFYQNPENNRAIAALLNEISLSVWDSQEDNSRNSILANKRLVFT 660

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTLQKI RH+AQE V QLGA+VS+ +S KT I++VGDN GSKL KA+QLG++I+NEEQFL
Sbjct: 661 GTLQKITRHQAQEAVKQLGAIVSSTISHKTHIVVVGDNAGSKLNKARQLGIEIVNEEQFL 720

Query: 716 FLLQQ 720
            L+ +
Sbjct: 721 SLISE 725


>gi|227822641|ref|YP_002826613.1| NAD-dependent DNA ligase LigA [Sinorhizobium fredii NGR234]
 gi|254781400|sp|C3MEL9|DNLJ_RHISN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|227341642|gb|ACP25860.1| DNA ligase [Sinorhizobium fredii NGR234]
          Length = 717

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/712 (49%), Positives = 493/712 (69%), Gaps = 4/712 (0%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E L+  +A +EL+ L  E++ HD  Y+    P I D++YDALKRR D I   FP L R
Sbjct: 7   PVEQLTETEAAEELAFLVTELARHDALYHGQDAPEISDADYDALKRRNDLIEELFPALIR 66

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            + P+    KIG   +L+   V H+ P LSL+  ++ ED R F+  IYRF  K  D+SI 
Sbjct: 67  EDSPS---RKIGAAPSLTFQPVLHARPMLSLDNTFSDEDARDFVAGIYRFLGKLPDHSIA 123

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYE  K V AA RGDG +GE+V+A IR I  IP+ L  + P+++EV
Sbjct: 124 FTAEPKIDGLSMSLRYENRKLVTAATRGDGTTGENVTANIRTIRMIPQTLPADAPDVVEV 183

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGE+Y++K+DF ALN EM A GR  Y NPRN ASG LR+L+     +R L FF +  G+ 
Sbjct: 184 RGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRKLRFFAYAWGEI 243

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S + +  Q+ M++  +  GFPVN  +++ ++   ++ +Y+ ++  R  L YDIDG+VYKV
Sbjct: 244 SAMPSDTQFGMVETFKAWGFPVNPLMQRLSSADELLQHYHHIERERPDLDYDIDGVVYKV 303

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D   LQ +LG R+RSPRW  +HKF  +QA TRL  IDIQ+GRTG LTPVARLEP+ +GG 
Sbjct: 304 DRLDLQARLGFRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITVGGV 363

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++TNATLHNEDYI+G+  SG+ +R GRDIR+GD V+V+RAG+VIP++VD++++ER   A+
Sbjct: 364 VVTNATLHNEDYIRGIGNSGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERAEGAE 423

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP+ CP+C S  VRD+N KTGK+ A  RCTGG  C AQ +E LKHFVSR AF+IEGL
Sbjct: 424 PYRFPTTCPVCGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAIEHLKHFVSRHAFDIEGL 483

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++FFF+SEDP  SIR   DIFTL+RRQ+ S TK+ENI GFG VSV  LY++IN RR
Sbjct: 484 GSKQIEFFFESEDPTLSIRTAPDIFTLERRQEASLTKLENIEGFGKVSVRKLYEAINARR 543

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L RFI++LGIRHVG   A+ LA+ Y +Y++F   + +  +   D W  L  +  +G+
Sbjct: 544 EIALHRFIYALGIRHVGETTAKLLARSYGTYEHFRAAMVDAGSLAGDAWNELNSIEGIGE 603

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+AIVEFY+ PRN+  V  LL+EV P       +  S +  K +VFTG+L+K+ R +A
Sbjct: 604 VVARAIVEFYKEPRNLKVVSDLLEEVRPESAETRVSTDSPVAGKTVVFTGSLEKMTRDEA 663

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 664 KAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 715


>gi|86358438|ref|YP_470330.1| NAD-dependent DNA ligase LigA [Rhizobium etli CFN 42]
 gi|123738303|sp|Q2K6D3|DNLJ_RHIEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86282540|gb|ABC91603.1| DNA ligase (NAD+) protein [Rhizobium etli CFN 42]
          Length = 718

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/712 (47%), Positives = 493/712 (69%), Gaps = 5/712 (0%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VETLTIEEAAAELERLAREIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+    ++G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  DSPS---RRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRMPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+   AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLTTAATRGDGTTGENVTANIRTIAEIPNQLPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ S
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           ++ A  Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD
Sbjct: 245 DMPADTQFAMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLKRPDLDYDIDGVVYKVD 304

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ++LG R+RSPRW  +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+ +GG +
Sbjct: 305 SLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +TNATLHNEDYIKG+  SG+ +R    DIR GD V+V+RAG+VIP+++D+++ +R  + +
Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRLAEVK 424

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP+C S  VR++N KTGK+ +  RCTGG  C AQ  E LKHFVSR+AF+IEGL
Sbjct: 425 PYEFPKICPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+DFFF++EDP+  IR   +IFTL++RQQ S TK+ENI GFG VSV  LY +IN+RR
Sbjct: 485 GSKQIDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAINERR 544

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + D W  L  +  +G+
Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNAIEGIGE 604

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+A+VEFY+ PRN+  +  LL EV+P+         S +  K +VFTG+L+K  R +A
Sbjct: 605 VVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFTRDEA 664

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716


>gi|209550159|ref|YP_002282076.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|254781399|sp|B5ZWH9|DNLJ_RHILW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|209535915|gb|ACI55850.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 718

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/712 (47%), Positives = 492/712 (69%), Gaps = 5/712 (0%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELERLAKEIAHHDALYHGKDRPQISDADYDALKRRNDALEVQFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+    ++G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  DSPS---RRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ S
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A  Q++M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD
Sbjct: 245 EMPADTQFDMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ +LG R+RSPRW  +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+ +GG +
Sbjct: 305 SLELQARLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364

Query: 368 ITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +TNATLHNEDYIKG+  SG+ +R    DIR GD V+V+RAG+VIP+++D+++ +R  DA+
Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEDHDIREGDTVIVQRAGDVIPQILDVVMEKRTADAR 424

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP+C S  VR++N KTGK+ +  RCTGG  C AQ  E LKHFVSR+AF+IEGL
Sbjct: 425 SYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+DFFF+ ED +  IR   +IFTL++RQQ S TK+ENI GFG VSV  LY +IN+RR
Sbjct: 485 GSKQIDFFFEHEDASLQIRTAPEIFTLEKRQQASLTKLENIDGFGKVSVGKLYTAINERR 544

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + D W  L  +  +G+
Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFAMAMKEAAPLSGDAWNDLNAIEGIGE 604

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+A+VEFY+ PRN+  +  L++EV+P          S +  K +VFTG+L+K  R +A
Sbjct: 605 VVARAMVEFYKEPRNVEVITRLIEEVTPQQAEQPVTTGSPVAGKTVVFTGSLEKFTRDEA 664

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716


>gi|327194610|gb|EGE61460.1| DNA ligase (NAD+) protein [Rhizobium etli CNPAF512]
          Length = 718

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/712 (47%), Positives = 493/712 (69%), Gaps = 5/712 (0%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELERLAKEIAHHDSLYHGKDQPEISDADYDALKRRNDALEVRFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+     +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  DSPS---RHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ +
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMA 244

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A  Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD
Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ++LG R+RSPRW  +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+ +GG +
Sbjct: 305 SLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +TNATLHNEDYIKG+  SG+ +R    DIR GD V+V+RAG+VIP+++D+++ +R  DA+
Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRAADAR 424

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP+C S  VR++N KTGK+ +  RCTGG  C AQ  E LKHFVSR+AF+IEGL
Sbjct: 425 SYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+DFFF++EDP+  IR   +IFTL++RQQ S TK+ENI GFG VSV  LY +IN+RR
Sbjct: 485 GAKQVDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAINERR 544

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + D W  L  +  +G+
Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNAIEGIGE 604

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+A+VEFY+ PRN+  +  LL EV+P+         S +  K +VFTG+L+K  R +A
Sbjct: 605 VVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFTRDEA 664

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716


>gi|190892570|ref|YP_001979112.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652]
 gi|254781398|sp|B3PTU7|DNLJ_RHIE6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190697849|gb|ACE91934.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652]
          Length = 718

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/712 (47%), Positives = 492/712 (69%), Gaps = 5/712 (0%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+     +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  DSPS---RHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ +
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMA 244

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A  Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD
Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ++LG R+RSPRW  +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+ +GG +
Sbjct: 305 SLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +TNATLHNEDYIKG+  SG+ +R    DIR GD V+V+RAG+VIP+++D+++ +R  DA+
Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRAADAR 424

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP+C S  VR++N KTGK  +  RCTGG  C AQ  E LKHFVSR+AF+IEGL
Sbjct: 425 SYEFPKTCPVCGSHAVREVNEKTGKTDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+DFFF++EDP+  IR   +IFTL++RQQ S TK+ENI GFG VSV  LY +IN+RR
Sbjct: 485 GSKQVDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAINERR 544

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + + W  L  +  +G+
Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGEAWTDLNAIEGIGE 604

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+A+VEFY+ PRN+  +  LL EV+P+         S +  K +VFTG+L+K  R +A
Sbjct: 605 VVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFTRDEA 664

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716


>gi|241205543|ref|YP_002976639.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859433|gb|ACS57100.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 718

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/712 (47%), Positives = 489/712 (68%), Gaps = 5/712 (0%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELERLAKEIAHHDALYHGKDRPEISDADYDALKRRNDALEVRFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+     +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  DSPS---RHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ S
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A  Q+ M+Q  +  GFPVN  V++ N+   I+++Y+E+   R  L YDIDG+VYKVD
Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLVKRLNSVADILTHYDEIGLERPDLDYDIDGVVYKVD 304

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ +LG R+RSPRW  +HKF  +QA T + +IDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 305 SLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLTPITVGGVV 364

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +TNATLHN DYI+G+  SG+ +R    DIR+GD V+V+RAG+VIP+V+D+++ +R  +A+
Sbjct: 365 VTNATLHNADYIRGIGNSGERIRADEHDIRIGDTVIVQRAGDVIPQVLDVVMEKRSAEAR 424

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP+C S  VR+ + KTGKL +  RCTGG  C AQ  E LKHFVSR+AF+IEGL
Sbjct: 425 PYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+DFFF++ED +  IR   DIFTL++RQQ S TK+ENI GFG VSV  LY +I +RR
Sbjct: 485 GSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYAAITERR 544

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I+L RFI++LGIRHVG   A+ LA+ Y +Y  F   +    A + D W  L  +  +G+
Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYAAFETAMREAEALSGDAWNDLNAIEGIGE 604

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+AIVEFY+ PRN+  +  L++EV+P      K   S +  K +VFTG+L+K  R +A
Sbjct: 605 VVARAIVEFYKEPRNVEVITRLIEEVTPEEAEQPKTAGSPVAGKTVVFTGSLEKFTRDEA 664

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTDI++ G   GSKL+KA++ GV+ M+E+++L L+
Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKAREFGVQTMDEDEWLALI 716


>gi|222086432|ref|YP_002544966.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84]
 gi|254781247|sp|B9JH39|DNLJ_AGRRK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221723880|gb|ACM27036.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84]
          Length = 717

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 472/689 (68%), Gaps = 4/689 (0%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           +D  Y+    P I D+EYDALKRR DAI   FP L R++ P+    ++G   + +   V 
Sbjct: 30  NDALYHGNDAPEISDAEYDALKRRNDAIEARFPALVRADSPS---RRVGAAPSETFMPVV 86

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H+ P LSL+  ++ ED++ F+  +YRF  +  D SI FT EPKIDG  ++IRYE G+ V 
Sbjct: 87  HARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAFTAEPKIDGLSMSIRYENGRMVS 146

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
           AA RGDG +GE+V+A IR I  IP+ L    P ++E+RGEVY++K+DFLALN +M A G+
Sbjct: 147 AATRGDGTTGENVTANIRTIKEIPQTLPAGAPAVVEIRGEVYMAKSDFLALNAQMEAEGK 206

Query: 211 KPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
           + Y NPRN A+G LR+L+     +R L FF +  G+ S++ A  Q+ M+Q     GFPVN
Sbjct: 207 QSYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMSDMPADTQFGMVQAFGEWGFPVN 266

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
             +++ N+   I+++Y+E+   R  L YDIDG+VYKVD   LQ +LG R+RSPRW  +HK
Sbjct: 267 PLMKRLNSVADILAHYDEIGLQRPDLDYDIDGVVYKVDSLELQARLGFRSRSPRWATAHK 326

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           F  +QA TRLLDIDIQ+GRTG LTPVARLEP+ +GG ++TNATLHN DYIKG+   G+ +
Sbjct: 327 FPAEQALTRLLDIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNADYIKGIGNKGEPI 386

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
           R GRDIR+GD V+V+RAG+VIP++VD+++ +R   +  + FP  CP+C S  VRD+N KT
Sbjct: 387 RDGRDIRIGDMVIVQRAGDVIPQIVDVVLEKREASSVAYEFPKTCPVCGSHAVRDINEKT 446

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
           GK+ A  RCTGG  C AQ  E LKHFVSR+A++IEGLG +Q+DFFF+S+DPA  +R   D
Sbjct: 447 GKVDAVTRCTGGFICRAQATEHLKHFVSRNAYDIEGLGSKQIDFFFESDDPALQVRTAPD 506

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
           IFTL+RRQQ+S +K+ENI GFG VSV+ LY +IN+RR+I+L RFIF+LGIRHVG   A+ 
Sbjct: 507 IFTLERRQQSSLSKLENIDGFGKVSVSKLYAAINERRDIALHRFIFALGIRHVGETTAKL 566

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           LA+ Y +Y+ F   +        D W  L  +  VG+++A+A+VEFY+ PRN+  +  LL
Sbjct: 567 LARSYGTYEAFEAGMKEAAPLAGDAWNDLNNIEGVGEVVARAVVEFYKEPRNVEVISKLL 626

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
            EV P          S +  K +VFTG+L+K  R +A+     LGA VS  +S+KTDI++
Sbjct: 627 DEVRPQEAEQPTTSGSPVVGKTVVFTGSLEKFTRDEAKAKAESLGAKVSGSVSKKTDIVV 686

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G   GSKL+KA++  V++M E+++L L+
Sbjct: 687 AGPGAGSKLDKAREFNVQVMTEDEWLELI 715


>gi|116253034|ref|YP_768872.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. viciae
           3841]
 gi|123261370|sp|Q1ME47|DNLJ_RHIL3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115257682|emb|CAK08780.1| putative DNA ligase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 718

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/712 (48%), Positives = 494/712 (69%), Gaps = 5/712 (0%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL+ L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELARLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVRFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+     +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  DSPS---RHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ S
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A  Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD
Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ +LG R+RSPRW  +HKF  +QA T + +IDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 305 SLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLTPITVGGVV 364

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +TNATLHN DYI+G+  SG+ +R    DIR+GD V+V+RAG+VIP+V+D+++ +R  +A+
Sbjct: 365 VTNATLHNADYIQGIGNSGERIRDDEHDIRIGDTVIVQRAGDVIPQVLDVVMEKRPAEAR 424

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP+C S  VR+ + KTGKL +  RCTGG  C AQ  E LKHFVSR+AF+IEGL
Sbjct: 425 PYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+DFFF++ED +  IR   DIFTL++RQQ S TK+ENI GFG VSV  LY +I++RR
Sbjct: 485 GSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYGAIDERR 544

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I+L RFI++LGIRHVG   A+ LA+ Y +Y+ F   +    A + D W  L  +  +G+
Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFETAMREAEALSGDAWNDLNAIEGIGE 604

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+AIVEFY+ PRN+  +  LL+EV+P      K   S +  K +VFTG+L+K+ R +A
Sbjct: 605 VVARAIVEFYKEPRNVEVITRLLEEVTPEEAEQPKTAGSPVAGKTVVFTGSLEKLTRDEA 664

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+Q+L L+
Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDQWLALI 716


>gi|150397271|ref|YP_001327738.1| NAD-dependent DNA ligase LigA [Sinorhizobium medicae WSM419]
 gi|166216245|sp|A6UB73|DNLJ_SINMW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150028786|gb|ABR60903.1| DNA ligase, NAD-dependent [Sinorhizobium medicae WSM419]
          Length = 717

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/715 (48%), Positives = 490/715 (68%), Gaps = 4/715 (0%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q  P+E ++  +A +EL+ L  E+S HD  Y+    P I D++YDALKRR D I   FP 
Sbjct: 4   QRKPVEQMTEAEAAEELAFLAAELSRHDMLYHGKDDPEISDADYDALKRRNDLIEERFPA 63

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R + P+    K+G   +L+   V H+ P LSL+  ++ ED R F+  IYRF  +  D 
Sbjct: 64  LIREDSPS---QKVGAAPSLTFAPVVHARPMLSLDNSFSDEDARAFVAGIYRFLGRLPDG 120

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           SI FT+EPKIDG  +++RYE  + V AA RGDG +GE+V+A +R I  IP+ L    P++
Sbjct: 121 SIAFTVEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANVRTIGMIPQRLPAEAPDV 180

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +E+RGE+Y++K+DF ALN EM A GR  Y NPRN ASG LR+L+     +R L FF +  
Sbjct: 181 VEIRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRRLRFFAYAW 240

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+ S + A  Q  M++  +  GFPVN  +++  +   ++ +Y+ ++  R  L YDIDG+V
Sbjct: 241 GEMSAMPADTQLGMVETFKAWGFPVNPLMQRFFSADELLEHYHHIERERPELDYDIDGVV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+  LQ +LG R+RSPRW  +HKF  ++A TRL  IDIQ+GRTG LTPVARLEP+ +
Sbjct: 301 YKVDQLDLQARLGFRSRSPRWATAHKFPAERAFTRLKGIDIQVGRTGALTPVARLEPITV 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++TNATLHNEDYI+G+  +G+ +R GRDIR+GD V+V+RAG+VIP++VD++++ER  
Sbjct: 361 GGVVVTNATLHNEDYIRGIGNTGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERPE 420

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             +P+ FP+ CPIC S  VRD+N KTGK+ A  RCTGG  C AQ +E LKHFVSR+AF+I
Sbjct: 421 GTEPYRFPTSCPICGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDI 480

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG +Q++FFF+SED    IR   DIFTL+RRQ++S TK+ENI GFG VSV  LY++IN
Sbjct: 481 EGLGSKQIEFFFESEDETLRIRTAPDIFTLERRQESSLTKLENIDGFGKVSVRKLYEAIN 540

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            RR+I L RFI++LGIRHVG   A+ LA+ Y +Y++F   +      + D W  L  +  
Sbjct: 541 ARRSIGLHRFIYALGIRHVGETTAKLLARSYGTYEHFGAAMTEAGGFSGDAWNELNSIDG 600

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G+++A+AIVEFY+ PRN+  +  LL+EV+P          S +  K +VFTG+L+K+ R
Sbjct: 601 IGEVVARAIVEFYKEPRNLKVLSDLLEEVTPERAEMPVATDSPVAGKTVVFTGSLEKMTR 660

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+     LGA V+  +S+KTDI++ G   GSKL+KA++LG++ M+E+++L L+
Sbjct: 661 DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGLQTMDEDEWLALI 715


>gi|15965917|ref|NP_386270.1| NAD-dependent DNA ligase LigA [Sinorhizobium meliloti 1021]
 gi|307308227|ref|ZP_07587936.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C]
 gi|307319694|ref|ZP_07599119.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83]
 gi|81634276|sp|Q92NM8|DNLJ_RHIME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15075186|emb|CAC46743.1| Probable DNA ligase [Sinorhizobium meliloti 1021]
 gi|306894625|gb|EFN25386.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83]
 gi|306901225|gb|EFN31831.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C]
          Length = 717

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/689 (48%), Positives = 470/689 (68%), Gaps = 4/689 (0%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           HD  Y+    P I D++YDALKRR D I   FP L R + P+    K+G   +L+   V 
Sbjct: 30  HDMLYHGKDAPEISDADYDALKRRNDLIEERFPVLVREDSPS---RKVGAAPSLTFAPVV 86

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H+ P LSL+  ++ ED R F+  +YRF  K  D SI FT EPKIDG  +++RYE  + V 
Sbjct: 87  HARPMLSLDNTFSDEDARAFVAGVYRFLGKLPDGSIAFTAEPKIDGLSMSLRYENRRLVT 146

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
           AA RGDG +GE+V+A +R I  IP+ L  + P+++E+RGE+Y++K+DF ALN EM A GR
Sbjct: 147 AATRGDGTTGENVTANVRTIGMIPQTLPADAPDVVEIRGEIYMAKSDFAALNAEMAAQGR 206

Query: 211 KPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
             Y NPRN ASG LR+L+      R L FF +  G+ S + A  Q  M++  +  GFPVN
Sbjct: 207 PLYVNPRNTASGSLRQLDAKVTANRKLRFFAYAWGEMSAMPADTQLGMVETFKAWGFPVN 266

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
             +++  +   ++ +Y+ ++  R  L YDIDG+VYKVD   LQ +LG R+RSPRW  +HK
Sbjct: 267 PLMQRFFSADELLEHYHHIERERPDLDYDIDGVVYKVDRLDLQARLGFRSRSPRWATAHK 326

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           F  +QA TRL  IDIQ+GRTG LTPVARLEP+ +GG ++TNATLHNEDYI+G+  +G+ +
Sbjct: 327 FPAEQAFTRLKGIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNEDYIRGVGNTGEPI 386

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
           R GRD+R+GD V+V+RAG+VIP++VD++++ER   A+P+ FP+ CPIC S  VRD+N KT
Sbjct: 387 RDGRDVRIGDMVIVQRAGDVIPQIVDVVMDERPEGAEPYRFPTTCPICGSHAVRDINEKT 446

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
           GK+ A  RCTGG  C AQ +E LKHFVSR+AF+IEGLG +Q++FFF+SED    IR   +
Sbjct: 447 GKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDIEGLGSKQIEFFFESEDENLRIRTAPE 506

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
           IFTL+RRQ+ S  K+EN  GFG VSV  LY++IN RR+I+L R I++LGIRHVG   A+ 
Sbjct: 507 IFTLERRQEASLNKLENTDGFGKVSVRKLYEAINARRSIALHRLIYALGIRHVGETTAKL 566

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           LA+ Y SY++F   +      + D W  L  +  +G+++A+AIVEFY+ PRN+  V  LL
Sbjct: 567 LARSYGSYEHFGAAMTEAAGFSGDAWNELNSIDGIGEVVARAIVEFYKEPRNLKVVSELL 626

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           +EV+P          S +  K +VFTG+L+K+ R +A+     LGA V+  +S+KTDI++
Sbjct: 627 QEVTPESAELPVATDSPVAGKTVVFTGSLEKMTREEAKAKAESLGAKVAGSVSKKTDIVV 686

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 687 AGPGAGSKLDKARELGVQTMDEDEWLALI 715


>gi|222149123|ref|YP_002550080.1| NAD-dependent DNA ligase LigA [Agrobacterium vitis S4]
 gi|254781248|sp|B9JY41|DNLJ_AGRVS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221736108|gb|ACM37071.1| DNA ligase [Agrobacterium vitis S4]
          Length = 719

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/716 (48%), Positives = 480/716 (67%), Gaps = 6/716 (0%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           LIP+E LS EQA +EL  L   I++HD  Y+   +P I D++YDALKRR DAI   FP L
Sbjct: 5   LIPVEDLSEEQAGQELIRLAAAIAHHDALYHGKDQPEISDADYDALKRRNDAIEARFPTL 64

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            RS+ P+    ++G        ++TH+ P LSL+  ++ ED+  F+  +YRF     DNS
Sbjct: 65  VRSDSPS---QRVGAAPAGIFSQITHARPMLSLDNTFSDEDVADFVASVYRFLGVMPDNS 121

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE  K   AA RGDG +GE+V+A I  I  IP  L  + P+++
Sbjct: 122 IAFTAEPKIDGLSMSIRYEHRKLKTAATRGDGTTGENVTANILTIKEIPTELPADAPDVV 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY++K+DFLALN +M A GR+ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 182 EVRGEVYMAKSDFLALNAQMEAEGRQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S + A+ Q  M++  +  GFPVN   R+  +   I+++Y E+   R+ L YDIDG+VY
Sbjct: 242 EMSTMPAETQSGMVEAFKRWGFPVNPLTRRLTSVEEIIAHYREIGLQRADLDYDIDGVVY 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW  +HKF  +QA T +  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 302 KVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTTVEAIDIQVGRTGALTPVARLEPITVG 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           G ++TNATLHN DYI+G+   G+ +R  G DIR+GD V+V+RAG+VIP+V+D+++ +R  
Sbjct: 362 GVVVTNATLHNADYIEGIGNGGERIRPEGHDIRIGDTVIVQRAGDVIPQVLDVVLEKRPE 421

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            +  + FP  CP+C S  VR+ N KTGKL +  RCTGG  CSAQ  E +KHFVSR+AF+I
Sbjct: 422 TSVKYEFPKTCPVCGSHAVREKNEKTGKLDSVTRCTGGFVCSAQAKEHIKHFVSRNAFDI 481

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSI 542
           EGLG +Q+DFFF+SEDPA  IR   DIFTL++RQ+ S+ T++ENI GFG VSV  L+D+I
Sbjct: 482 EGLGTKQVDFFFESEDPALMIRTAPDIFTLKQRQEASSLTRLENIDGFGRVSVRKLFDAI 541

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           + RR I+L RFIF+LGIRHVG   A+ LA+ Y SY  FA  +        + W  L  + 
Sbjct: 542 DARREIALNRFIFALGIRHVGETTAKLLARSYGSYAAFADAMQEAAPKFGEAWNELNSID 601

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G+++A ++VEF++ PRN+  V  LLKEV+P          S +  K +VFTG+L++  
Sbjct: 602 GIGEVVAASMVEFFKEPRNLEVVSRLLKEVTPLDAEAVTASDSPVAGKTVVFTGSLERFT 661

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+     LGA V+  +S+KTD ++ G   GSKL+KA+++GV +M E+++L L+
Sbjct: 662 RDEAKARAESLGAKVAGSVSKKTDYLVAGPGAGSKLDKAREVGVTVMTEDEWLALI 717


>gi|254719452|ref|ZP_05181263.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
 gi|265984457|ref|ZP_06097192.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
 gi|306839229|ref|ZP_07472046.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653]
 gi|264663049|gb|EEZ33310.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
 gi|306405776|gb|EFM62038.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653]
          Length = 719

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/724 (47%), Positives = 479/724 (66%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+    P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L+ F  V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYEDGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPSVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ +R  D
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDVVLEKRSAD 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A PF FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 AVPFQFPHECPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA SIR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALSIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +     D        W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|325293451|ref|YP_004279315.1| DNA ligase [Agrobacterium sp. H13-3]
 gi|325061304|gb|ADY64995.1| DNA ligase [Agrobacterium sp. H13-3]
          Length = 724

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/727 (47%), Positives = 490/727 (67%), Gaps = 14/727 (1%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K Q IP+E L+  +A  EL+ L  E++ HD  Y+    P I D++YDALKRR DAI  
Sbjct: 1   MSKDQ-IPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEA 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFP L R++ P+    K+G     +   + H+ P LSL+  ++  DLR F++ +YRF   
Sbjct: 60  AFPALVRADSPS---KKVGFTPLPTFAPIVHARPMLSLDNTFSEGDLRDFVSSVYRFLGH 116

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D+SI FT EPKIDG  ++IRYE GK   AA RGDG +GE+V+A I+ I  IP  L  +
Sbjct: 117 LPDDSIAFTAEPKIDGLSMSIRYENGKLKTAATRGDGTTGENVTANIKTIKEIPNQLPAD 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238
           +P+++EVRGEVY++K+DF+ALN +M A G++ Y NPRN ASG LR+ +  ++T  R L F
Sbjct: 177 VPDVVEVRGEVYMAKSDFMALNAQMEADGKQTYVNPRNTASGSLRQFD-ANVTAKRKLRF 235

Query: 239 FVHGLGKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           F + LG+ S        A  QY +++K R  GFPVN  +++  +   ++ +YNE+   R 
Sbjct: 236 FAYALGEVSNGGQPTRIADTQYGIVEKFREWGFPVNPLMKRFTSAEQLLEHYNEIGVARP 295

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            L YDIDG+VYKVD   LQ++LG R+RSPRW  +HKF  +QA T + +I+IQ+GRTG LT
Sbjct: 296 DLDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALT 355

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPK 412
           PVARL P+ +GG ++TNATLHN DYI+G+  SG+ +R    DIR+GD V+V+RAG+VIP+
Sbjct: 356 PVARLTPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQ 415

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
           V+D+++ +R  +A  ++FP  CP+C S  VR+ N KTGKL +  RCTGG  C AQ +E L
Sbjct: 416 VLDVLLEKRPAEAVKYAFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHL 475

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFG 531
           KHFVSR+AF+IEGLG +Q+DFFF+SEDPA SI+   DIFTL+ RQ+ S  TK+ENI GFG
Sbjct: 476 KHFVSRNAFDIEGLGSKQIDFFFESEDPALSIKTAPDIFTLKARQEASHLTKLENIDGFG 535

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
            VSV  L+D+I+ RR I L R IF+LGIRHVG   A+ LA+ Y +Y++F + +       
Sbjct: 536 KVSVKKLFDAIDARREIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEEAMKAAADPA 595

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
           +D W  L  +  +G+++A+AI+EFY+ PRN+  ++ L++E+ P          S +  K 
Sbjct: 596 SDAWAELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELRPKEAEKPSTEGSPVAGKT 655

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +VFTG+L+K  R +A+     LGA V+  +S+KTDI++ G   GSKL KA +LGV+ M+E
Sbjct: 656 VVFTGSLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKAAELGVQTMDE 715

Query: 712 EQFLFLL 718
           +++L L+
Sbjct: 716 DEWLALI 722


>gi|306844319|ref|ZP_07476911.1| DNA ligase, NAD-dependent [Brucella sp. BO1]
 gi|306275391|gb|EFM57132.1| DNA ligase, NAD-dependent [Brucella sp. BO1]
          Length = 719

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/724 (46%), Positives = 477/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+    P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEARFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L+ F  V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L DIDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRDIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYEFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +     D        W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDVVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|15889366|ref|NP_355047.1| NAD-dependent DNA ligase LigA [Agrobacterium tumefaciens str. C58]
 gi|166215388|sp|A9CIB3|DNLJ_AGRT5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15157212|gb|AAK87832.1| DNA ligase [Agrobacterium tumefaciens str. C58]
          Length = 724

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/727 (47%), Positives = 488/727 (67%), Gaps = 14/727 (1%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K Q IP+E L+  +A  EL+ L  E++ HD  Y+    P I D++YDALKRR DAI  
Sbjct: 1   MSKDQ-IPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEA 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFP L R++ P+    K+G     +   + H+ P LSL+  ++ EDLR F++ +YRF   
Sbjct: 60  AFPALVRADSPS---KKVGFTPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGH 116

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D+SI FT EPKIDG  ++IRYE  K   AA RGDG +GE+V+A IR I  IP  L  +
Sbjct: 117 LPDDSIAFTAEPKIDGLSMSIRYENRKLKTAATRGDGTTGENVTANIRTIKEIPNELPAD 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238
            P+++EVRGEVY++K+DFLALN +M A G++ Y NPRN ASG LR+L+  ++T  R L F
Sbjct: 177 APDVVEVRGEVYMAKSDFLALNAQMEADGKQTYVNPRNTASGSLRQLD-ANVTAKRKLRF 235

Query: 239 FVHGLGKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           F + LG+ S        A  QY +++K R  GFPVN  +++  +   ++ +YNE+   R 
Sbjct: 236 FAYALGEVSNGGQPARIADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARP 295

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            L YDIDG+VYKVD   LQ++LG R+RSPRW  +HKF  +QA T + +I+IQ+GRTG LT
Sbjct: 296 DLDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALT 355

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPK 412
           PVARL P+ +GG ++TNATLHN DYI+G+  SG+ +R    DIR+GD V+V+RAG+VIP+
Sbjct: 356 PVARLTPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQ 415

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
           V+D+++ +R   A  + FP  CP+C S  VR+ N KTGKL +  RCTGG  C AQ +E L
Sbjct: 416 VLDVLLEKRAAGAAKYVFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHL 475

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFG 531
           KHFVSR+AF+IEGLG +Q+DFFF+S+DPA SI+   DIFTL+ RQ+ S  TK+ENI GFG
Sbjct: 476 KHFVSRNAFDIEGLGTKQIDFFFESDDPALSIKTAPDIFTLKARQEASHLTKLENIDGFG 535

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
            VSV  L+D+I+ RR I L R IF+LGIRHVG   A+ LA+ Y +Y++F + +       
Sbjct: 536 KVSVKKLFDAIDARRAIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEKAMKAAADPA 595

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
           +D W  L  +  +G+++A+AI+EFY+ PRN+  ++ L++E+ P          S +  K 
Sbjct: 596 SDAWAELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELQPKEAEKPSTEGSPVAGKT 655

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +VFTG+L+K  R +A+     LGA V+  +S+KTDI++ G   GSKL KA +LGV+ M+E
Sbjct: 656 VVFTGSLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKATELGVQTMDE 715

Query: 712 EQFLFLL 718
           +++L L+
Sbjct: 716 DEWLALI 722


>gi|225852902|ref|YP_002733135.1| NAD-dependent DNA ligase LigA [Brucella melitensis ATCC 23457]
 gi|256263616|ref|ZP_05466148.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9]
 gi|254781270|sp|C0RE59|DNLJ_BRUMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225641267|gb|ACO01181.1| DNA ligase, NAD-dependent [Brucella melitensis ATCC 23457]
 gi|263093668|gb|EEZ17673.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409444|gb|ADZ66509.1| NAD-dependent DNA ligase LigA [Brucella melitensis M28]
 gi|326539150|gb|ADZ87365.1| DNA ligase, NAD-dependent [Brucella melitensis M5-90]
          Length = 719

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/724 (46%), Positives = 476/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L+ F  V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +     D        W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|17986872|ref|NP_539506.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. 16M]
 gi|256045051|ref|ZP_05447952.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565350|ref|ZP_05835834.1| DNA ligase [Brucella melitensis bv. 1 str. 16M]
 gi|265991477|ref|ZP_06104034.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|81852173|sp|Q8YI56|DNLJ_BRUME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|17982511|gb|AAL51770.1| nad-dependent DNA ligase [Brucella melitensis bv. 1 str. 16M]
 gi|260151418|gb|EEW86512.1| DNA ligase [Brucella melitensis bv. 1 str. 16M]
 gi|263002261|gb|EEZ14836.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 719

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/724 (46%), Positives = 477/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L++F  V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RDDSPS---RRVGAAPALAIFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +     D        W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFKKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|23502291|ref|NP_698418.1| NAD-dependent DNA ligase LigA [Brucella suis 1330]
 gi|62290313|ref|YP_222106.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 1 str. 9-941]
 gi|82700237|ref|YP_414811.1| NAD-dependent DNA ligase LigA [Brucella melitensis biovar Abortus
           2308]
 gi|161619368|ref|YP_001593255.1| NAD-dependent DNA ligase LigA [Brucella canis ATCC 23365]
 gi|163843675|ref|YP_001628079.1| NAD-dependent DNA ligase LigA [Brucella suis ATCC 23445]
 gi|189024547|ref|YP_001935315.1| NAD-dependent DNA ligase LigA [Brucella abortus S19]
 gi|225627871|ref|ZP_03785908.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo]
 gi|254689615|ref|ZP_05152869.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
 gi|254694105|ref|ZP_05155933.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
 gi|254697757|ref|ZP_05159585.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
 gi|254704678|ref|ZP_05166506.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
 gi|254708093|ref|ZP_05169921.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
 gi|254710462|ref|ZP_05172273.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
 gi|254730646|ref|ZP_05189224.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
 gi|256031956|ref|ZP_05445570.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
 gi|256113974|ref|ZP_05454757.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160155|ref|ZP_05457849.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
 gi|256257864|ref|ZP_05463400.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
 gi|256369836|ref|YP_003107347.1| DNA ligase [Brucella microti CCM 4915]
 gi|260169093|ref|ZP_05755904.1| NAD-dependent DNA ligase LigA [Brucella sp. F5/99]
 gi|260546856|ref|ZP_05822595.1| DNA ligase [Brucella abortus NCTC 8038]
 gi|260566074|ref|ZP_05836544.1| DNA ligase [Brucella suis bv. 4 str. 40]
 gi|260755142|ref|ZP_05867490.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
 gi|260758361|ref|ZP_05870709.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
 gi|260762187|ref|ZP_05874530.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884154|ref|ZP_05895768.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
 gi|261214403|ref|ZP_05928684.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
 gi|261315595|ref|ZP_05954792.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
 gi|261318033|ref|ZP_05957230.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
 gi|261755371|ref|ZP_05999080.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
 gi|261758598|ref|ZP_06002307.1| DNA ligase [Brucella sp. F5/99]
 gi|265989064|ref|ZP_06101621.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
 gi|265995315|ref|ZP_06107872.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998527|ref|ZP_06111084.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
 gi|297248700|ref|ZP_06932418.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196]
 gi|75496544|sp|Q57C89|DNLJ_BRUAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81752355|sp|Q8FZQ3|DNLJ_BRUSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123768412|sp|Q2YLZ6|DNLJ_BRUA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359236|sp|A9M679|DNLJ_BRUC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359237|sp|B0CHK8|DNLJ_BRUSI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781269|sp|B2S6P4|DNLJ_BRUA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23348266|gb|AAN30333.1| DNA ligase, NAD-dependent [Brucella suis 1330]
 gi|62196445|gb|AAX74745.1| LigA, DNA ligase, NAD-dependent [Brucella abortus bv. 1 str. 9-941]
 gi|82616338|emb|CAJ11395.1| BRCT domain:NAD-dependent DNA ligase:ATP/GTP-binding site motif A
           (P-loop):Zn-finger in NAD-dependent DNA ligase, C4
           type:NAD [Brucella melitensis biovar Abortus 2308]
 gi|161336179|gb|ABX62484.1| DNA ligase, NAD-dependent [Brucella canis ATCC 23365]
 gi|163674398|gb|ABY38509.1| DNA ligase, NAD-dependent [Brucella suis ATCC 23445]
 gi|189020119|gb|ACD72841.1| DNA ligase [Brucella abortus S19]
 gi|225617876|gb|EEH14921.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo]
 gi|255999999|gb|ACU48398.1| DNA ligase [Brucella microti CCM 4915]
 gi|260095906|gb|EEW79783.1| DNA ligase [Brucella abortus NCTC 8038]
 gi|260155592|gb|EEW90672.1| DNA ligase [Brucella suis bv. 4 str. 40]
 gi|260668679|gb|EEX55619.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
 gi|260672619|gb|EEX59440.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675250|gb|EEX62071.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
 gi|260873682|gb|EEX80751.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
 gi|260916010|gb|EEX82871.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
 gi|261297256|gb|EEY00753.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
 gi|261304621|gb|EEY08118.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
 gi|261738582|gb|EEY26578.1| DNA ligase [Brucella sp. F5/99]
 gi|261745124|gb|EEY33050.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
 gi|262553151|gb|EEZ08985.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
 gi|262766428|gb|EEZ12217.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
           Ether]
 gi|264661261|gb|EEZ31522.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
 gi|297175869|gb|EFH35216.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196]
          Length = 719

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/724 (46%), Positives = 476/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L+ F  V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +     D        W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|237815820|ref|ZP_04594817.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A]
 gi|237789118|gb|EEP63329.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A]
          Length = 725

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/724 (46%), Positives = 476/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 10  ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 69

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L+ F  V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 70  RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 126

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 127 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 186

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 187 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 246

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 247 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 306

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 307 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 366

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 367 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 426

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 427 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 480

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 481 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 540

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +     D        W 
Sbjct: 541 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 600

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 601 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 660

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 661 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 720

Query: 717 LLQQ 720
           L+ +
Sbjct: 721 LVGE 724


>gi|239832299|ref|ZP_04680628.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301]
 gi|239824566|gb|EEQ96134.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301]
          Length = 734

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/724 (47%), Positives = 476/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP+E L+  +A  EL  L +EI++HD+ Y+   +P I D+EYDALKRR DAI   FP L 
Sbjct: 19  IPVEKLTEPEAVSELGRLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLV 78

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R++ P+    ++G         V H+ P LSL   ++ ED+R F+  +YRF  +  DNSI
Sbjct: 79  RTDSPS---LRVGTAPVSKFAPVVHARPMLSLGNAFSDEDVRDFVGSVYRFLGQLPDNSI 135

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++E
Sbjct: 136 AFTAEPKIDGLSMSIRYENGVLVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPSVVE 195

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           VRGEVY++K+DFLALN++M A G++ Y NPRN A+G LR+L+     +R L FF +  G+
Sbjct: 196 VRGEVYMAKSDFLALNEQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGE 255

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S++ A  Q  M++  R  GFPVN   ++ +    ++++Y  +   R TL YDIDG+VYK
Sbjct: 256 MSDMPADTQMGMVEMFREWGFPVNPLTKRLHGADELLAHYRAIGLERPTLDYDIDGVVYK 315

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   LQ +LG R+RSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARLEP+ +GG
Sbjct: 316 VDRLDLQTRLGFRSRSPRWAIAHKFPAEQATTILRGIDIQVGRTGALTPVARLEPITVGG 375

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
            ++TNATLHNEDYIKG+   G+ +R    DIR+GD V+V+RAG+VIP++VD+I+ +R  D
Sbjct: 376 VVVTNATLHNEDYIKGIGLKGERIRADEHDIRLGDTVIVQRAGDVIPQIVDVILEKRPVD 435

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A PF FP  CP+C S  VR+         A +RCTGGL C+AQ +ER++HFVSR+AF+IE
Sbjct: 436 AVPFHFPHECPVCGSHAVREEGE------AVYRCTGGLTCAAQAVERIRHFVSRNAFDIE 489

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +ED +  I+ PADIFTLQ+RQ  S  K+ENI GFG  SV  LYD+IN 
Sbjct: 490 GLGEKQVEFFFHAEDDSLKIKSPADIFTLQKRQAGSLKKLENIEGFGATSVKKLYDAIND 549

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA--------HNNDDWL 596
           RR I+L RF+F LGIRHVG   A+  A+ YLSY  F +     +           N+ W 
Sbjct: 550 RREIALNRFLFGLGIRHVGEVNAKRFARSYLSYAAFEKAALEAVPPKEGDRTDKGNEAWQ 609

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            LI V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 610 DLIAVEGIGSIVAEAVVDFYAEPHNREVLAALLAEVTPLDEAARVATGSPVEGKTVVFTG 669

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +SRKTD+++ G   GSKL KA +LG+++++E+ +  
Sbjct: 670 SLERMSRDEAKAMAERYGAKTAGSVSRKTDLVVAGPGAGSKLAKASELGIEVIDEDAWFK 729

Query: 717 LLQQ 720
           L+ +
Sbjct: 730 LVGE 733


>gi|254702142|ref|ZP_05163970.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
 gi|261752711|ref|ZP_05996420.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
 gi|261742464|gb|EEY30390.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
          Length = 719

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/724 (46%), Positives = 475/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L+ F  V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +     D        W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA     +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTVGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|148560656|ref|YP_001259312.1| NAD-dependent DNA ligase LigA [Brucella ovis ATCC 25840]
 gi|166215401|sp|A5VRG5|DNLJ_BRUO2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148371913|gb|ABQ61892.1| DNA ligase, NAD-dependent [Brucella ovis ATCC 25840]
          Length = 719

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/724 (46%), Positives = 475/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L+ F  V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++    Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPVDTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +     D        W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|306843233|ref|ZP_07475843.1| DNA ligase, NAD-dependent [Brucella sp. BO2]
 gi|306286556|gb|EFM58135.1| DNA ligase, NAD-dependent [Brucella sp. BO2]
          Length = 719

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/724 (46%), Positives = 475/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+    P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L+ F  V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLVLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LY++I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYEAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +     D        W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|256255361|ref|ZP_05460897.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
 gi|261222562|ref|ZP_05936843.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
 gi|260921146|gb|EEX87799.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
          Length = 719

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/724 (46%), Positives = 475/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L+ F  V H+ P LSL+  ++ ED+R F+  + RF  +  D+S
Sbjct: 64  RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVCRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +     D        W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|254714455|ref|ZP_05176266.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
 gi|254717353|ref|ZP_05179164.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
 gi|261219183|ref|ZP_05933464.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
 gi|261322244|ref|ZP_05961441.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
 gi|260924272|gb|EEX90840.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
 gi|261294934|gb|EEX98430.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
          Length = 719

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/724 (46%), Positives = 476/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L+ F  V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  S+  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSMKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596
           RR I+L RF+F LGIR+VG   A+ LA+ YLSY  F +     +     D        W 
Sbjct: 535 RREIALHRFLFGLGIRYVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|256061478|ref|ZP_05451622.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
 gi|261325484|ref|ZP_05964681.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
 gi|261301464|gb|EEY04961.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
          Length = 719

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/724 (46%), Positives = 474/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L+ F  V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY+ K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMVKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +ED A  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDSALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +     D        W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|294852747|ref|ZP_06793420.1| DNA ligase [Brucella sp. NVSL 07-0026]
 gi|294821336|gb|EFG38335.1| DNA ligase [Brucella sp. NVSL 07-0026]
          Length = 719

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/724 (46%), Positives = 474/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L+ F  V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GF VN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFLVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF   QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAGQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +     D        W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|163868703|ref|YP_001609915.1| NAD-dependent DNA ligase LigA [Bartonella tribocorum CIP 105476]
 gi|190359235|sp|A9IW95|DNLJ_BART1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161018362|emb|CAK01920.1| DNA ligase [Bartonella tribocorum CIP 105476]
          Length = 719

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/722 (46%), Positives = 473/722 (65%), Gaps = 17/722 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L++ +A +EL  L +EI+ HD  Y +  +P I D+EYDAL+RR   I   FP+L R 
Sbjct: 6   IKNLTVVEAERELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRV 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+   +KIG  ++    K  H+ P LSL+  ++ ED+ +F+ RI RF +  +   +  
Sbjct: 66  DSPS---HKIGAAISEKFEKSVHAQPMLSLDNAFSAEDVYEFVERIRRFLRLPETQVLEI 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYEKG+ V AA RGDG  GE+V+A  R I  IP+VL  + P++IEVR
Sbjct: 123 TAEPKIDGLSLSLRYEKGRLVRAATRGDGTVGENVTANARTIADIPQVLQGDFPDVIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+ + DF ALN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           EIFA+ Q EM+ K++  GF +N   +   T   I+SYY +++  R +L YDIDG+VYKV+
Sbjct: 243 EIFAESQMEMMTKLKEYGFVINPLTKVFKTVEDIISYYRDIEERRYSLNYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQK+LG  +RSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ IGG +
Sbjct: 303 DLMLQKRLGFVSRSPRWAIAHKFPAEKAMALLEDIDIQVGRTGALTPVARLTPITIGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNA+LHNEDYIKG+   G+ +R GRDIR+GD V+++RAG+VIP+VVDI++ +R  D+  
Sbjct: 363 VTNASLHNEDYIKGIGHKGEPIREGRDIRIGDTVIIQRAGDVIPQVVDIVLEKRQKDSSA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S  VR++        A  RCTGGL C AQ +ER++HFV+R+AF+IEGLG
Sbjct: 423 FVFPDLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVARNAFDIEGLG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K+Q++FFF ++D A  I  PADIFTL+RRQ+ S  ++ENI GFG VSV  LYD+IN RR 
Sbjct: 477 KKQVEFFFHAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARRE 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA-------HNNDDWLSLIR 600
           I L RF+F+LGIRHVG   AR LA+ Y +Y  F       +          N+ W+ L  
Sbjct: 537 IPLSRFLFALGIRHVGEVNARRLARAYQTYTAFETAAMEALMPCKQDNKEGNEAWMELTN 596

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G  +  AIV+FYQ   N   +  LL+E++P         SS I  K +VFTGTL  
Sbjct: 597 IEGIGPQVGSAIVDFYQEAHNREVLAVLLEEITPLDEVPIMTASSPIAEKIIVFTGTLAH 656

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R +A+    +LGA  S  LS+KTD+++ G   GSKL KAQ+ GV++++EE ++ L++ 
Sbjct: 657 MSRDEAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLTKAQEFGVQVIDEEAWMRLIKG 716

Query: 721 YN 722
           +N
Sbjct: 717 HN 718


>gi|240850882|ref|YP_002972282.1| DNA ligase [Bartonella grahamii as4aup]
 gi|240268005|gb|ACS51593.1| DNA ligase [Bartonella grahamii as4aup]
          Length = 719

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/719 (47%), Positives = 472/719 (65%), Gaps = 17/719 (2%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  +A  EL  L +EI+ HD  Y +  +P I D+EYDAL+RR   I   FP+L R + P
Sbjct: 9   LTAVEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRVDSP 68

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +   +KIG  ++    K  H+ P LSL+  ++ ED+ +F+ RI RF +  +   +  T E
Sbjct: 69  S---HKIGAPISEKFEKSVHAQPMLSLDNAFSSEDVTEFVERIRRFLRLPETQVLEITAE 125

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYEKG+ V AA RGDG  GE+V+A  R I  IP+VL  + P+IIEVRGEV
Sbjct: 126 PKIDGLSLSLRYEKGRLVGAATRGDGTVGENVTANARTIADIPQVLQGDFPDIIEVRGEV 185

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+ + DF ALN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ SEI 
Sbjct: 186 YMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVSEIL 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+ Q EM++K++  GF +N   +   T   I+SYY++++  R +L YDIDG+VYKV++  
Sbjct: 246 AESQMEMMKKLKEYGFVINPLTKAFKTLEEIISYYHDIEECRHSLSYDIDGIVYKVNDLM 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQK+LG  +RSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ +GG ++TN
Sbjct: 306 LQKRLGFVSRSPRWAIAHKFPAEKAIALLKDIDIQVGRTGALTPVARLTPITVGGVVVTN 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNEDYIKG+   G+ +R GRDIRVGD V+V+RAG+VIP+V+D+I+ +R  DA  F F
Sbjct: 366 ASLHNEDYIKGIGHKGEPIREGRDIRVGDSVIVQRAGDVIPQVIDVIIEKRPKDAAVFIF 425

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S  VR++        A  RCTGGL C AQ +ER++HFV+R+AF+IEGLGK+Q
Sbjct: 426 PHLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVARNAFDIEGLGKKQ 479

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++FFF ++D A  I  PADIFTL+RRQ+ S  ++ENI GFG VSV  LYD+IN RR I L
Sbjct: 480 VEFFFYAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARREIPL 539

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA-------HNNDDWLSLIRVPL 603
            RF+F+LGIRHVG   AR LA+ Y +Y  F       +          N+ W+ L  +  
Sbjct: 540 SRFLFALGIRHVGEVNARRLARTYKNYTAFETTAMGALMPCDKANEKGNEAWMELTNIEG 599

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G  +  AIV+FYQ   N   +  LL+EV+P         SS I  K +VFTGTL  + R
Sbjct: 600 IGPQVGSAIVDFYQEAHNREVLSVLLEEVTPLDEEPITTASSPIAEKTIVFTGTLAHMSR 659

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A+    +LGA  S  LS+KTD+++ G   GSKL KA++LGV++++EE +L L+++++
Sbjct: 660 DEAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLAKAEELGVEVIDEETWLQLIEEHD 718


>gi|153009084|ref|YP_001370299.1| NAD-dependent DNA ligase LigA [Ochrobactrum anthropi ATCC 49188]
 gi|166216221|sp|A6WZR6|DNLJ_OCHA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151560972|gb|ABS14470.1| DNA ligase, NAD-dependent [Ochrobactrum anthropi ATCC 49188]
          Length = 721

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/725 (46%), Positives = 473/725 (65%), Gaps = 21/725 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E L+  +A  EL  L +EI++HD+ Y+   +P I D+EYDALKRR DAI   FP L R
Sbjct: 5   PVEKLTEPEAVSELERLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLVR 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           ++ P+    ++G        +V H+ P LSL   ++ +D+R F+  +YRF     DNSI 
Sbjct: 65  TDSPS---LRVGTAPVSKFAQVVHARPMLSLGNAFSDDDVRDFVGSVYRFLGPLPDNSIA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  ++IRYE G  +  A RGDG +GE+V+  IR I  IP  L    P ++EV
Sbjct: 122 FTAEPKIDGLSMSIRYENGILISGATRGDGTTGENVTTNIRTIAEIPNRLPAGAPSVVEV 181

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGEVY++K+DFLALN++M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ 
Sbjct: 182 RGEVYMAKSDFLALNEQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEM 241

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S++ A  Q  M++  R  GFPVN   ++ +    ++++Y  +   R+ L YDIDG+VYKV
Sbjct: 242 SDMPADTQMGMVEIFREWGFPVNPLTKRLHGADELLAHYRAIGLERAQLDYDIDGVVYKV 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D   LQ +LG R+RSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARLEP+ +GG 
Sbjct: 302 DRLDLQTRLGFRSRSPRWAIAHKFPAEQATTILRGIDIQVGRTGALTPVARLEPITVGGV 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           ++TNATLHNEDYIKG+   G+ +R    DIRVGD V+V+RAG+VIP++VD+++ +R  DA
Sbjct: 362 VVTNATLHNEDYIKGIGLKGERIRADEHDIRVGDTVIVQRAGDVIPQIVDVVLEKRKADA 421

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF FP  CP+C S  VR+         A +RCTGGL C+AQ +ER++HFVSR+AF+IEG
Sbjct: 422 TPFVFPHECPVCHSHAVREEGE------AVYRCTGGLTCAAQAVERIRHFVSRNAFDIEG 475

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSINK 544
           LG++Q++FFF +ED    I+ PADIFTLQ+RQ  S   K+ENI GFG  SV  LYD+IN 
Sbjct: 476 LGEKQVEFFFHAEDDKLKIKSPADIFTLQQRQAESPLKKLENIEGFGATSVKKLYDAIND 535

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA--------HNNDDWL 596
           RR I+L RF+F LGIRHVG   A+  A+ YLSY  F +     +           N+ W 
Sbjct: 536 RREIALHRFLFGLGIRHVGEVNAKRFARAYLSYAAFEEAALEAVPPKEGDRTDKGNEAWQ 595

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFT 655
            LI V  +G I+A+A+V+FY  P N   ++ L K  V+P       +  S +E K +VFT
Sbjct: 596 ELIAVEGIGSIVAEAVVDFYAEPHNREVLDNLFKAGVTPVDEVALVSTGSPVEGKTVVFT 655

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G+L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG+++++E+ + 
Sbjct: 656 GSLERMSRDEAKAMAERYGAKTAGSVSKKTDLVVAGPGAGSKLAKASELGIEVIDEDAWF 715

Query: 716 FLLQQ 720
            L+ +
Sbjct: 716 TLVGE 720


>gi|49474446|ref|YP_032488.1| NAD-dependent DNA ligase LigA [Bartonella quintana str. Toulouse]
 gi|81646941|sp|Q6FZ81|DNLJ_BARQU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49239950|emb|CAF26355.1| DNA ligase [Bartonella quintana str. Toulouse]
          Length = 719

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/719 (46%), Positives = 469/719 (65%), Gaps = 17/719 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  Y +  +P I D+EYDAL+RR   I   FP+L RS
Sbjct: 6   IKNLTALEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRS 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+   +KIG  ++    K  H+   LSL+  ++ ED+ +FI RI RF +      +  
Sbjct: 66  DSPS---HKIGAPVSEKFEKSVHAQAMLSLDNAFSSEDICEFIVRIRRFLRLPATQILEM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYEKG+ V AA RGDG+ GE+V+A  R I  IP+VL    P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEKGRLVCAATRGDGYIGENVTANARTISDIPKVLRGEFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+ + +F ALN      G+  +ANPRNAA+G LR+L+P    +R L+FF +  G+ S
Sbjct: 183 GEVYMRRENFQALNMSQQEKGKFVFANPRNAAAGSLRQLDPRITASRKLHFFAYACGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E FA  Q EM++K++  GF +N   +   T   I+SYY++++  R +L YDIDG+VYKV+
Sbjct: 243 ETFAASQMEMMKKLKEYGFFINPLTKSFKTLEEIISYYHDIEECRHSLSYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  +RSPRW ++HKF  ++A   L  IDIQ+GRTG LTPVARL P+ IGG +
Sbjct: 303 DLKLQMRLGFVSRSPRWAVAHKFPAEKAMALLEGIDIQVGRTGALTPVARLAPITIGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNA+LHNEDYIKG+   G+ +R GRDIRVGD V+V+RAG+VIP++VDII  +R   A  
Sbjct: 363 VTNASLHNEDYIKGIGHKGESIREGRDIRVGDTVIVQRAGDVIPQIVDIIAEKRPKGASA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S  VR++        +  RCTGGL C AQ +ER++HFVSR+AF+IEGLG
Sbjct: 423 FVFPHLCPACGSHAVREVGE------SVRRCTGGLICPAQAIERIRHFVSRNAFDIEGLG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K+Q++FFF  +D A  I  PADIFTLQRRQ+ +  ++EN+ GFG VSV  LY++IN RR 
Sbjct: 477 KKQVEFFFHIQDEALCIHTPADIFTLQRRQEKALVRLENMEGFGTVSVRKLYNAINMRRK 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-------AQEINNIIAHNNDDWLSLIR 600
           + L RF+F+LGIRH+G   AR LA  Y +Y  F           + +    N+ WL L  
Sbjct: 537 VPLSRFLFALGIRHIGEVNARRLAHAYQNYTAFETVAMAATMPYDKVGEEGNEAWLELTN 596

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G  + +AI++FYQ   N   + ALL+EV+P    +    SS I  K +VFTGTL +
Sbjct: 597 IEGIGPQVGEAIIDFYQEAHNREVLAALLREVTPLDEENVMTASSPIAGKTIVFTGTLAR 656

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A+    +LGA  S  LS+KTD+++ G   GSKL KAQ LGV++++EE +L L++
Sbjct: 657 MSRDEAKALAERLGAKTSGSLSKKTDLLVAGSAVGSKLAKAQGLGVEVIDEEAWLQLIE 715


>gi|49475845|ref|YP_033886.1| NAD-dependent DNA ligase LigA [Bartonella henselae str. Houston-1]
 gi|81647763|sp|Q6G2R5|DNLJ_BARHE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49238653|emb|CAF27899.1| DNA ligase [Bartonella henselae str. Houston-1]
          Length = 716

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/719 (46%), Positives = 470/719 (65%), Gaps = 17/719 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  Y +  +P I D+EYDAL+RR   I   FP+L R 
Sbjct: 6   IQNLTALEAASELEWLAKEITRHDVLYNRNDQPEISDAEYDALRRRNAEIEALFPELIR- 64

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P +KIG  ++    K  HS P LSL+  ++ ED+ +F+ R+ RF +  +   +  
Sbjct: 65  --PDSPSHKIGAPISEKFEKSVHSQPMLSLDNAFSSEDVSEFMERVRRFLRLPETQMLEI 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE+G+ V AA RGDG+ GE+V+A  R I  IP+VL    P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEQGRLVCAATRGDGYVGENVTANARTISDIPQVLQGKFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+ + DF ALN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMRRADFQALNVNQQEKGKLAFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           EIFA+ Q  M++K++  GF +N  +++  +   ++SYY++++  R  L YDIDG+VYKV+
Sbjct: 243 EIFAESQMGMMEKLKEYGFVINPLIKKIKSLEELISYYHDIEERRHALSYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  +RSPRW I+HKF  ++A T L  IDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLMLQMRLGFVSRSPRWAIAHKFPAEKAMTVLEGIDIQVGRTGALTPVARLAPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ITNA+LHNEDYIKG+ + G+ +R G DIRVGD V+V+RAG+VIP+++DI+  +R  DA  
Sbjct: 363 ITNASLHNEDYIKGIGSKGEPIREGNDIRVGDTVIVQRAGDVIPQIIDIVAEKRSKDASA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S  VR++        A  RCTGGL C AQ +ER++HFVSR+AF+IEGLG
Sbjct: 423 FVFPYLCPACGSYAVREIGE------AVRRCTGGLICPAQAIERIRHFVSRNAFDIEGLG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K+Q++FFF+ +D    I  PADIFTLQRRQ+ S   +EN+ GFG VSV  LYD+IN RR 
Sbjct: 477 KKQVEFFFQIQDETLCIHTPADIFTLQRRQEKSLVHLENMEGFGTVSVRKLYDAINARRK 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI-------NNIIAHNNDDWLSLIR 600
           I L RF+F+LGIR+VG   AR LA+ Y +Y  F           + +    N+ W+ L  
Sbjct: 537 IPLSRFLFALGIRYVGEVNARRLARAYQNYTAFETAAMAATMPDDKVGKEGNEAWMELTN 596

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G  + +AI++FY+   N   +  LL EV+P         SS I  K +VFTGTL +
Sbjct: 597 IEGIGPQVGEAIIDFYKEVHNREVLSGLLCEVTPLDEESVMTASSPIAGKIIVFTGTLTR 656

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A+    +LGA  S  LS+KT++++ G   GSKL KAQ+LGV++++EE +L L++
Sbjct: 657 MSRDEAKALAERLGAKTSGSLSKKTNLLVAGVGGGSKLTKAQELGVEVIDEEAWLQLIE 715


>gi|319408814|emb|CBI82471.1| DNA ligase [Bartonella schoenbuchensis R1]
          Length = 718

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/720 (46%), Positives = 474/720 (65%), Gaps = 16/720 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+  +A  EL  L +EI+ HD  Y    +P I D++YDAL+RR   I   FP+L R+
Sbjct: 6   VKNLTALEAASELEWLAKEIARHDVLYNNNDQPEISDAQYDALRRRNTEIEALFPELIRT 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+    KIG  ++    K  H+   LSL+  ++ ED+ +F+ R+ RF +     ++  
Sbjct: 66  DSPS---YKIGAPVSEKFEKSVHAQAMLSLDNAFSAEDVSEFVERVRRFLRLPSTQTLEM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE+GK V AA RGDG++GE+V+   R I  IP+VL    P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEQGKLVRAATRGDGYTGENVTTNARTISDIPKVLQGEFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVYI + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYIRQEDFQVLNINQQKEGKIAFANPRNAAAGSLRQLDSRITASRKLKFFAYAWGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ AK Q EM+ K++  GF VN   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPAKSQMEMVNKLKEYGFIVNPFTKVFEKVEDLISYYHFIEEQRQSLSYDIDGVVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  +RSPRW I+HKF  ++A+  L  IDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLGLQMRLGFVSRSPRWAIAHKFPAEKATALLEGIDIQVGRTGALTPVARLAPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VDII ++R  DA P
Sbjct: 363 VTNATLHNEDYIKGVGRKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDIISSKRPKDAVP 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S  VR++        A +RCTGGL CSAQ +ER++HFVSR+AF+IEGLG
Sbjct: 423 FVFPHHCPACGSHAVREVGE------AVYRCTGGLICSAQAIERIRHFVSRNAFDIEGLG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K+Q++FFF  +D    IR P DIFTL++RQ+ + T++ENI GFG +SV  L+D+IN RR 
Sbjct: 477 KKQVEFFFNIQDETLCIRSPVDIFTLEKRQKKALTRLENIEGFGSLSVRKLFDAINARRE 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHN-----NDDWLSLIRV 601
           I L RF+F+LGIRHVG   A+ LA+ Y +Y  F A  +  I+ H+     N++W  LI +
Sbjct: 537 IPLSRFLFALGIRHVGEVNAQRLARVYRNYTAFEAAVMAAIVPHDKTDEGNEEWTDLISI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  + +AI++FYQ   N   + ALL+EV+P          S I  K +VFTGTL  +
Sbjct: 597 EGIGVRVGRAIIDFYQEAHNRDVLSALLQEVTPLPEEAIATDYSPIAGKIIVFTGTLMSM 656

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+    +LGA  S  +S+KTD++I G   GSKL KA++LGV+I++E+ +  L+++Y
Sbjct: 657 SRDEAKALAERLGAKTSGSISKKTDLLIAGLGAGSKLTKAKELGVEIIDEDSWSQLIKEY 716


>gi|307944884|ref|ZP_07660221.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4]
 gi|307771808|gb|EFO31032.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4]
          Length = 721

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/716 (45%), Positives = 468/716 (65%), Gaps = 13/716 (1%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + +EAL+ EQA  EL  L   I+ HD  Y+Q   P I D++YDAL+RR  AI   FPDL 
Sbjct: 13  LDVEALTSEQAETELERLANAIAKHDKLYHQDDAPAISDADYDALRRRNTAIEARFPDLV 72

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--N 124
           R + P+     +G   + +  K+ H +P LSL+  +N ED++ F+ R+ RF  K D    
Sbjct: 73  RDDSPS---RNVGAAPSEAFSKIEHKVPMLSLDNAFNDEDVQDFVGRVRRFL-KFDPLMG 128

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           ++  T EPKIDG  +++RYE G  VYAA RGDG +GE+V+A  + I  IP+ LS + P++
Sbjct: 129 ALAVTAEPKIDGLSLSLRYEAGALVYAATRGDGTTGENVTANAKTISDIPQKLSGDAPDV 188

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG 242
           +E+RGEVY++  DF  LN  M A G K +ANPRNAA+G LR+L  ++IT  R L FF + 
Sbjct: 189 VEIRGEVYMAHADFQVLNQRMEANGGKVFANPRNAAAGSLRQLK-SEITASRPLKFFAYA 247

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G  S + A  Q  M+++M+  GF +N  +++  T   +++ Y+ ++  R+TL YDIDG+
Sbjct: 248 WGDMSALPADTQMGMVEQMKVWGFQINPLMKRCETVEELLAVYHGIEEDRATLGYDIDGV 307

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKVD   LQ++LG  +RSPRW I+HKF  ++A T L +IDIQ+GRTG LTPVA+LEPV 
Sbjct: 308 VYKVDRLDLQQRLGFVSRSPRWAIAHKFPAEKAYTILNEIDIQVGRTGALTPVAKLEPVT 367

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG +++NATLHNEDYIKG+   G+ +RGG+D+R GD V V+RAG+VIP++VD+ +++R 
Sbjct: 368 VGGVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRPGDTVQVQRAGDVIPQIVDVDLSKRK 427

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             A+PF FPS CP C S  VR+ NPKTG+L A  RCTG L C AQ  ERLKHFVSR+AF+
Sbjct: 428 EGAEPFEFPSVCPRCGSHAVREENPKTGRLDAVRRCTGALICPAQATERLKHFVSRNAFD 487

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG G +Q+D FF        ++  ADIFTL+ R + S TK+ N  G+G VS  NL+++I
Sbjct: 488 IEGFGDKQVDAFFADG----LVKTAADIFTLEERDKQSLTKLRNREGWGTVSAKNLFEAI 543

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N +RNI L R IF LGIRHVG   A+ LA+ Y S+Q F   +      N + W  L  + 
Sbjct: 544 NAKRNIDLHRLIFGLGIRHVGEGNAKLLARAYGSWQAFYDAMVKAHDKNGEAWEDLNAID 603

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G I+A+A+ EF+    N   ++ALL ++SP       +  S +  K +VFTG L+++ 
Sbjct: 604 GIGHIVAEALTEFFAEEHNREQLDALLAQISPKQVEQIDSSGSPVAGKTVVFTGALERMT 663

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+    +LGA VS  +S+KTD+++ G   GSKL+KAQ L ++++ E+ +  L+
Sbjct: 664 RDEAKAMAERLGAKVSGSVSKKTDLLVAGPGAGSKLKKAQGLQIEVITEDVWFDLV 719


>gi|254470147|ref|ZP_05083551.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062]
 gi|211960458|gb|EEA95654.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062]
          Length = 722

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/713 (44%), Positives = 468/713 (65%), Gaps = 7/713 (0%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IEAL+ E+A  EL  L + I+ +D+ Y+    PI+ D+ YD L+RR  A+   FP+L R+
Sbjct: 11  IEALNAEEAALELERLARLIAEYDEAYHTQDAPIVDDATYDGLRRRNAALEAKFPELVRA 70

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSI 126
           + P+   N++GG +     K+TH++P LSL+  ++ ED++ FI ++ RF  K D    ++
Sbjct: 71  DSPS---NRVGGAVAEGFGKITHAVPMLSLDNAFSDEDVQDFIGKVRRFL-KYDPLMGAL 126

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T EPKIDG  +++RYE GK VYAA RGDG +GE+V+A    I  IP+ L   +P+++E
Sbjct: 127 AVTAEPKIDGLSLSLRYESGKLVYAATRGDGATGENVTANALTIQDIPQELPAGVPDVVE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN  M A G K +ANPRNAA+G LR+LNP    TR L FF +  G 
Sbjct: 187 VRGEVYMSHADFAALNARMEANGGKVFANPRNAAAGSLRQLNPEITKTRPLKFFAYAWGD 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE+ A  Q  M++     GF +N  +++  T   ++  Y+ ++  RS L YDIDG+VYK
Sbjct: 247 MSEVPADTQMGMVELFGAWGFQINPLMKRCETVEALLKVYHGIEEDRSGLGYDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   LQ +LG  +RSPRW I+HKF  ++A T L  I+IQ+GRTG LTPVA+LEPV +GG
Sbjct: 307 VDRLDLQGRLGFVSRSPRWAIAHKFPAERAFTTLNAIEIQVGRTGALTPVAKLEPVTVGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYIKG+   G+ +R  +D+RVGD V+++RAG+VIP++VD+ +++R  D 
Sbjct: 367 VVVSNATLHNEDYIKGIGQDGESIRDSKDLRVGDTVIIQRAGDVIPQIVDVDLSKRAEDV 426

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           QP+ FP+ CP+C S  +R+ NP +GK+ A  RCTGGL C AQ +E+LKHFVSR+AF+IEG
Sbjct: 427 QPYEFPTECPVCNSHAIRETNPNSGKVDAVRRCTGGLICPAQAVEKLKHFVSRNAFDIEG 486

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++Q++ F++ +     IR PADIFTL  R + S  K+ +  GFG VS   L+++I+ +
Sbjct: 487 LGEKQMEAFYEYDMDKGGIRTPADIFTLAERDKVSLNKLRSREGFGAVSARKLFEAIDSK 546

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I L R IF LGIRHVG   A+ LA+ Y S+Q F   +       ++ +  L  +  +G
Sbjct: 547 RQIELNRVIFGLGIRHVGEGNAKLLARAYSSWQGFYDAMIAATDTTSEAYRELNDIDGIG 606

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +A A+VEF+    N+ A+ AL+++++P          S +  K LVFTG+L+++ R +
Sbjct: 607 GTVANALVEFFAEEHNLTALAALMEQITPLDVVVADTSGSPVAGKTLVFTGSLERMSRDE 666

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+     LGA VS  +S+KTD++I G   GSKL KAQ LG+ +++E+ +  L+
Sbjct: 667 AKARAESLGAKVSGSVSKKTDLVIAGPKAGSKLTKAQSLGIDVISEDDWFELV 719


>gi|121602535|ref|YP_989218.1| NAD-dependent DNA ligase LigA [Bartonella bacilliformis KC583]
 gi|166215397|sp|A1UTB5|DNLJ_BARBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120614712|gb|ABM45313.1| DNA ligase, NAD-dependent [Bartonella bacilliformis KC583]
          Length = 717

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/719 (45%), Positives = 475/719 (66%), Gaps = 18/719 (2%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  +A +EL  L +EI+ HD  Y  + +P I D+ YDAL+RR   I   FP+L R++ P
Sbjct: 8   LTALEAERELEWLAKEIARHDVLYNNHDQPEISDARYDALRRRNIEIETLFPELVRADSP 67

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    K+G  ++    K  H+   LSL+  ++ ED+ +F+ R+ RF +     ++  T E
Sbjct: 68  S---YKVGAPISERFEKSVHAQAMLSLDNAFSSEDVHEFVERVRRFLRLPVTKTLEMTAE 124

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYEKGK V AA RGDG+ GE+V+   R +  IP+VL  + P+I+EVRGEV
Sbjct: 125 PKIDGLSLSLRYEKGKLVCAATRGDGYVGENVTVNARTLSDIPQVLQGDFPDILEVRGEV 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+  +DF  LN +    G+  +ANPRNAA+G LR+L+ T +T  R L FF +G G+ SE+
Sbjct: 185 YMRHSDFQDLNVDQQEKGKLVFANPRNAAAGSLRQLD-TRMTARRKLKFFAYGWGEVSEM 243

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK Q EM++K++  GF +N   +       ++SYY+ ++  R  L YDIDG+VYKV++ 
Sbjct: 244 PAKSQMEMVKKLKEYGFVINPLTKVFKAVEDLISYYHFIEEGRQHLDYDIDGVVYKVNDL 303

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  +RSPRW I+HKF  ++A   L +IDIQIGRTG LTPVARL P+ +GG ++T
Sbjct: 304 LLQTRLGNVSRSPRWAIAHKFPAEKAMALLENIDIQIGRTGALTPVARLAPITVGGVVVT 363

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NA+LHNEDYIKGL +  + +R GRDIR+GD V+V+RAG+VIP+++D+I+ +R   A PF 
Sbjct: 364 NASLHNEDYIKGLGSKSESIREGRDIRIGDTVIVQRAGDVIPQIIDVIIEKRPKGASPFV 423

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FPS CP C S  VR++        A  RCTGGL C AQ +ER++HFVSR+AF+IEGLG++
Sbjct: 424 FPSLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVSRNAFDIEGLGEK 477

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           Q++FFF ++D    I  PADIFTLQ+RQ+ S T++EN+ GFG +SV  LYD+IN RR I 
Sbjct: 478 QVEFFFHAQDETLRIHSPADIFTLQKRQEKSLTRLENMEGFGTLSVRKLYDAINARRKIP 537

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHN-----NDDWLSLIRVPL 603
           L RF+F+LGIRHVG   AR LA+ Y +Y  F    +  ++  N     N++WL L  +  
Sbjct: 538 LSRFLFALGIRHVGEVNARRLARAYQNYNAFETVAMTALMPCNKEDKGNEEWLELTSIEG 597

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G  + +AI++FYQ   N   + +LL+EV+P          S +  K +VFTGTL  + R
Sbjct: 598 IGVRVGKAIIDFYQETHNRDVLSSLLQEVTPLPEEAAVADYSPVAGKTIVFTGTLVHMSR 657

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            + +    +LGA  S+ +S+KTD+++ G   GSKL KA++LG++IM+EE +L L+ +++
Sbjct: 658 DEVKALAERLGAKASSSISKKTDLLVAGIGAGSKLTKAKELGIEIMDEESWLQLINEHH 716


>gi|319404500|emb|CBI78105.1| DNA ligase [Bartonella rochalimae ATCC BAA-1498]
          Length = 725

 Score =  638 bits (1646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/723 (46%), Positives = 473/723 (65%), Gaps = 22/723 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  Y++  +P I D+EYDAL RR + I   FP+L R+
Sbjct: 6   IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+   +KIG  ++    K  H+ P LSL+  +N ED+ +FI RI RF +  +  +I  
Sbjct: 66  DSPS---SKIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQTIEM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK V A  RG+G  GE+V+   R I  IP +L  N P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVRAITRGNGSIGENVTTNARTIADIPEILQGNFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+ + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A+ Q  M++K++  GF +N   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  ARSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ITNA+LHNEDYIKG+   G+++R GRDIRVGD V+++RAG+VIP++VD++V +R  D   
Sbjct: 363 ITNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRSKDTPA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C S  VR+     G+ V   RCTGGL CSAQ +ER+ HFVSR+AF+IEG G
Sbjct: 423 FIFPHVCPVCGSHAVRE----EGETV--RRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++FFF ++D    IR P DIFTLQRRQ+ S  ++EN+ GFG VSV  LY++IN RR 
Sbjct: 477 RKQVEFFFHAQDKTLCIRSPVDIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARRE 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601
           ISL RF+F+LGIRH+G   A+ LA+ Y +Y  F       I      +  N+ W  L  +
Sbjct: 537 ISLSRFLFALGIRHIGEVKAQRLARAYQNYIAFETAAMTAIMPPDKNSEGNEIWKELTNI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTL 658
             +G  + +AI++FYQ   N   + ALLKEV+P    HE  ++   S I  K +VFTGTL
Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRDVLSALLKEVTP---LHEAPIAIDYSPIVEKIIVFTGTL 653

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + R +A+    +LGA  S  +S+KTD+++ G   GSKL KAQQLG+++++E+ +L L+
Sbjct: 654 EHMSRDEAKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLVKAQQLGIEVLDEKNWLKLI 713

Query: 719 QQY 721
            ++
Sbjct: 714 DEH 716


>gi|319405996|emb|CBI79627.1| DNA ligase [Bartonella sp. AR 15-3]
          Length = 718

 Score =  635 bits (1638), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 329/720 (45%), Positives = 469/720 (65%), Gaps = 22/720 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  Y++  +P I D+EYDAL+RR + I   FP+L R 
Sbjct: 6   IKNLTALEAEGELEWLAKEIARHDVLYHRDDQPEISDAEYDALRRRNEEIEALFPELVRV 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+   +KIG  ++    K  H+ P LSL+  +N +D+ +FI RI RF +  +   I  
Sbjct: 66  DSPS---SKIGAPISEKFEKSIHAQPMLSLDNAFNFKDVSEFIERIRRFLRFPETQIIEM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK V A  RG+G+ GE+V+   R I  IP++L    P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVCAITRGNGYIGENVTTNARTIADIPQILQGKFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+ + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGQKDFQLLNISQQKEGKLAFANPRNAAAGSLRQLDSQITASRNLKFFAYAWGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A+ Q EM++K++  GF +N   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPAESQIEMMEKLKEYGFIINPLTKVFEKVEDLISYYHSIEKCRQSLNYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  +RSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLMLQTRLGFVSRSPRWAIAHKFPAEKAIALLEDIDIQVGRTGALTPVARLTPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNA+LHNEDYIKG+   G+++R GRDIRVGD V+++RAG+VIP++VD++V +R      
Sbjct: 363 VTNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPKGTPT 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C S  VR+         A  RCTGGL CSAQ +ER+ HFVSR+AF+IEG G
Sbjct: 423 FIFPRVCPVCGSHAVREEGE------AIRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++FFF  +D    I  PADIFTLQRRQ+ S  ++EN+ GFG VSV  LY++IN RR 
Sbjct: 477 RKQVEFFFHIQDKTLCIHSPADIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARRK 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNNDDWLSLIRV 601
           ISL RF+F+LGIRH+G   A+ LA+ Y +Y  F     + I         N+ W+ L  +
Sbjct: 537 ISLSRFLFALGIRHIGEVNAQRLARAYQNYAAFETAAMSAIMPSGKNIEGNEIWMELTNI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTL 658
             +G  + +AI++FYQ   N   + ALLKEV+P    HE  V+   S +  K +VFTGTL
Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRNVLLALLKEVTP---LHEMPVAIDYSPVVGKTIVFTGTL 653

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           Q + R +A+    +LGA  S  +S+KTD+++ G   GSKL KAQQLG+++++E+ +L L+
Sbjct: 654 QHMSRDEAKSLAERLGAKTSNSISKKTDLLVAGSGAGSKLIKAQQLGIEVLDEKSWLKLI 713


>gi|319407493|emb|CBI81141.1| DNA ligase [Bartonella sp. 1-1C]
          Length = 725

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 332/720 (46%), Positives = 470/720 (65%), Gaps = 22/720 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  Y++  +P I D+EYDAL RR + I   FP+L R+
Sbjct: 6   IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+   +KIG  ++    K  H+ P LSL+  +N ED+ +FI RI RF +  +   I  
Sbjct: 66  DSPS---SKIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQIIEM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK V A  RG+G  GE+V+   R I  IP++L  N P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVRAITRGNGSIGENVTTNARTIADIPQILQANFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+ + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A+ Q  M++K++  GF +N   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  ARSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNA+LHNEDYIKG+   G+ +R GRDIRVGD V+++RAG+VIP++VD++V +R  D   
Sbjct: 363 VTNASLHNEDYIKGIGHKGEPIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPKDTPA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C S  VR+     G+ V   RCTGGL CSAQ +ER+ HFVSR+AF+IEG G
Sbjct: 423 FIFPHVCPVCGSHAVRE----EGETV--RRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++FFF ++D    IR P DIFTLQRRQ+ S  ++EN+ GFG VSV  LY++IN RR 
Sbjct: 477 RKQVEFFFHAQDKMLCIRSPVDIFTLQRRQENSLKRLENMEGFGVVSVRKLYNAINARRE 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNNDDWLSLIRV 601
           ISL RF+F+LGIRH+G   A+ LA+ Y +Y  F     + I         N+ W+ L  +
Sbjct: 537 ISLSRFLFALGIRHIGEVKAQRLARAYQNYTAFETAAMSAIMPPDKNNEGNEIWVELTNI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTL 658
             +G  + +AI++FYQ   N   + ALLKEV+P    HE  V+   S I  K + FTGTL
Sbjct: 597 EGIGFRVGKAIIDFYQEVHNRDILSALLKEVTP---LHEAPVTIDYSPIVGKIITFTGTL 653

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + R +A+    +LGA  S  +S+KTD+++ G   GSKL KAQQLG+++++E+ +L L+
Sbjct: 654 EHMSRDEAKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLTKAQQLGIEVLDEKNWLKLI 713


>gi|319899147|ref|YP_004159240.1| DNA ligase [Bartonella clarridgeiae 73]
 gi|319403111|emb|CBI76669.1| DNA ligase [Bartonella clarridgeiae 73]
          Length = 718

 Score =  629 bits (1621), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 328/720 (45%), Positives = 466/720 (64%), Gaps = 22/720 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  YY+  +P I D+EYDAL+RR  AI + FP+L R+
Sbjct: 6   IKNLTALEAASELEWLAKEIARHDVLYYRDDQPEISDAEYDALRRRNGAIENLFPELIRA 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P     KIG  ++    K  H+ P LSL+  +N +D+ +F+ RI RF +  +   I  
Sbjct: 66  DSPT---FKIGAPISEKFEKSVHAQPMLSLDNAFNFKDVSEFVERIRRFLRFPETQIIKM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK V A  RG+G+ GE+V+   R I  IP+VL    P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYETGKLVRAVTRGNGYIGENVTTNARTIADIPQVLQGKFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+ + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGQKDFQLLNISQQKEGKLAFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEMS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+  + Q EM+++++  GF +N   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPVESQMEMMERLKEYGFIINPLTKVFEKLEDLISYYHFIEECRQSLDYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  +RSPRW I+HKF  ++A   L  IDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLVLQTRLGFVSRSPRWAIAHKFPAEKAIALLESIDIQVGRTGALTPVARLTPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNA+LHNEDYIKG+    + +R GRDIRVGD V+++RAG+VIP++VD++V +R  D   
Sbjct: 363 VTNASLHNEDYIKGIGYKNEPIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPRDTPA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C S  VR+      K  A  RCTGGL CSAQ +ER+ HFVSR+AF+IEG G
Sbjct: 423 FVFPHLCPVCGSHAVRE------KGEAVRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++FFF ++D    I  PADIFTLQRRQ+ S  ++EN+ GFG VSV  LY++IN RR 
Sbjct: 477 RKQVEFFFHAQDETLCIHSPADIFTLQRRQENSLKRLENMEGFGVVSVRKLYNAINARRK 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601
           +SL RF+F+LGIRHVG   A+ LA+ Y +Y  F     + I      +  N+ W+ L  +
Sbjct: 537 VSLSRFLFALGIRHVGEVNAQRLARAYQNYTAFETAAMSAIMPSDKFSKGNEIWVELTNI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTL 658
             +G  + +AI++FYQ   N   + ALLKEV+P    HE  V    S +  K +VFTGTL
Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRDVLLALLKEVTPF---HEVPVEIDYSPLAGKIIVFTGTL 653

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + R +A+    +LGA  S  +S+K D ++ G   GSKL KAQQLGV++++E+ +L L+
Sbjct: 654 EHMSRDEAKALAERLGAKTSNSISKKVDFLVSGFGAGSKLAKAQQLGVEVLDEKSWLKLI 713


>gi|118590881|ref|ZP_01548281.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614]
 gi|118436403|gb|EAV43044.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614]
          Length = 750

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 319/714 (44%), Positives = 467/714 (65%), Gaps = 13/714 (1%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+AL+ E+A+ EL  L  EI+ HD  Y+Q   P+I D++YDAL+RR  +I   FP+L   
Sbjct: 44  IDALTQEEAQVELKRLAAEIAEHDRRYHQEDAPVISDADYDALRRRNASIEARFPNLILD 103

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSI 126
              +GP  ++G        K+TH +P LSL+  +N +D+R F+ R+ RF  K D    ++
Sbjct: 104 ---DGPSAQVGAAPASGFGKITHRVPMLSLDNAFNDDDVRDFVGRVRRFL-KYDPLMGAL 159

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T EPKIDG  +++RYE G  VYAA RGDG +GE+V+   + I  IP  LS  +P+++E
Sbjct: 160 AVTAEPKIDGLSLSLRYENGTLVYAATRGDGTTGENVTENAKTIKDIPEKLSGTVPDVVE 219

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244
           VRGEVY++  DF ALN+ M A G K +ANPRNAA+G LR+L  ++IT  R L FF +  G
Sbjct: 220 VRGEVYMAHKDFQALNERMAANGGKVFANPRNAAAGSLRQLK-SEITASRPLRFFAYAWG 278

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S +    Q+ M++++   GF +N  +R+  T   ++  Y+ ++  R+ L YDIDG+VY
Sbjct: 279 EMSALPEDTQFGMVKQLEAWGFQINPLMRRCETVEELLGVYHGIEESRAQLDYDIDGVVY 338

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ++LG  +RSPRW I+HKF  +QA T L DI+IQ+GRTG LTPVA+LEP+ +G
Sbjct: 339 KVDRLDLQERLGFVSRSPRWAIAHKFPAEQAYTVLNDIEIQVGRTGALTPVAKLEPITVG 398

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYIKG+   G+ +RGG+D+R+GD V ++RAG+VIP++VDI +++R   
Sbjct: 399 GVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRIGDTVKIQRAGDVIPQIVDIDLDKRPEG 458

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+ F FP+ CP C S  VR+   KTG+  A  RCTGGL C AQ  E+LKHFVSR+AF+IE
Sbjct: 459 AEAFEFPTICPACGSHAVREEKEKTGRRDAVRRCTGGLICPAQATEKLKHFVSRNAFDIE 518

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G G +Q+D F+K       +  PADIFTL+ R + S TK+ N  G+G VS  NL+++IN 
Sbjct: 519 GFGDKQVDAFYKEG----LVMAPADIFTLEERDKRSLTKLRNREGWGAVSAKNLFEAINA 574

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RR I L RFIF+LGIRHVG   A+ LA+ Y S+  F   +       ++ W  L  +  +
Sbjct: 575 RREIDLHRFIFALGIRHVGEGNAKLLARAYGSWAAFYAAMKAAHDTESEAWAELNDIDGI 634

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G I+A+A+ EF+    N+  ++ALL EVSP          S +  K +VFTG+L+++ R 
Sbjct: 635 GHIVAEALAEFFAEQHNLDQLDALLVEVSPKDAEKINASGSPVAGKTVVFTGSLERMTRD 694

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+    + GA  +  +S+KTD+++ G   GSKL+KAQ+L +++++E+ +  L+
Sbjct: 695 EAKAMAERFGAKTAGSVSKKTDLVVAGPGAGSKLKKAQELEIEVISEDDWFDLV 748


>gi|254502790|ref|ZP_05114941.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11]
 gi|222438861|gb|EEE45540.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11]
          Length = 725

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 318/716 (44%), Positives = 470/716 (65%), Gaps = 13/716 (1%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +  L+ E A+ EL  L  EI+ HD  Y+Q   P I D++YDAL+RR  AI   FPDL 
Sbjct: 16  IAVLDLTPEAAKAELERLASEIAEHDRRYHQEDAPTISDADYDALRRRNSAIEARFPDLI 75

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--N 124
            +   +GP  ++G        K+TH +P LSL+  ++ +D+R F+ R+ RF  K D    
Sbjct: 76  LA---DGPSAQVGAAPASGFGKITHRVPMLSLDNAFSDDDVRDFVGRVRRFL-KFDPLMG 131

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           ++  T EPKIDG  +++RYE GK VYAA RGDG +GE+V+A  + I  IP  L+ ++ ++
Sbjct: 132 ALAVTAEPKIDGLSLSLRYEDGKLVYAATRGDGTTGENVTANAKTITDIPHTLAGSVLDV 191

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG 242
           +EVRGEVY++  DF ALN  M+A G K +ANPRNAA+G LR+L  ++IT  R L FF + 
Sbjct: 192 VEVRGEVYMAHKDFEALNARMVANGGKVFANPRNAAAGSLRQLK-SEITASRPLRFFAYA 250

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ S +    Q  M+ ++   GF +N  +++  T   +++ Y+ ++  R+ L YDIDG+
Sbjct: 251 WGEMSTLPKDTQDGMVAQLAAWGFQINPLMKRCETVEELLAVYHGIEENRAQLDYDIDGV 310

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKVD   LQ++LG  +RSPRW I+HKF  +QA T L DI+IQ+GRTG LTPVA+LEP+ 
Sbjct: 311 VYKVDRLDLQERLGFVSRSPRWAIAHKFPAEQAWTVLNDIEIQVGRTGALTPVAKLEPIT 370

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG +++NATLHNEDYIKG+   G+ +RGG+D+R GD V ++RAG+VIP++VD+ +++R 
Sbjct: 371 VGGVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRKGDAVKIQRAGDVIPQIVDVDLDKRL 430

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             A+P+ FP+ CP C S  VR+ N KTG+  A  RCTGGL C AQ  E+LKHFVSR+AF+
Sbjct: 431 DGAEPYEFPTRCPRCNSHAVREENEKTGRKDAVRRCTGGLICPAQATEKLKHFVSRNAFD 490

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG G +Q+D F++ +     +   ADIFTL  R + S TK+ N  G+G VS  NL+++I
Sbjct: 491 IEGFGDKQVDAFYQDD----LVMTAADIFTLAERDKQSLTKLRNREGWGAVSAKNLFEAI 546

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           + RR I L RFIF+LGIRHVG   A+ LA+ Y S+ NF + +     H ++ W  L  + 
Sbjct: 547 DARREIDLHRFIFALGIRHVGEGNAKLLARAYGSWANFYKAMTEASDHGSEAWAELNDID 606

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G I+A A+VEF+    N   ++ALL+EV+P+         S +  K +VFTG+L+++ 
Sbjct: 607 GIGHIVADALVEFFAENHNREQLDALLQEVTPTDAEKIDASGSPVAGKTVVFTGSLERMT 666

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+    + GA VS  +S+KTD+++ G   GSKL+KA +L +++++E+ +  L+
Sbjct: 667 RDEAKAMAERFGAKVSGSVSKKTDLVVAGPGAGSKLKKASELEIEVISEDDWFDLV 722


>gi|328542977|ref|YP_004303086.1| DNA ligase, NAD(+)-dependent [polymorphum gilvum SL003B-26A1]
 gi|326412723|gb|ADZ69786.1| DNA ligase, NAD(+)-dependent [Polymorphum gilvum SL003B-26A1]
          Length = 721

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 330/721 (45%), Positives = 474/721 (65%), Gaps = 8/721 (1%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           +K     +E+LS ++A  EL+ L  EI+ HD  Y+    P + D+EYDAL+RR  AI   
Sbjct: 3   EKSAAAAVESLSRQEAEAELARLAAEIAAHDQRYFAEDAPTVSDAEYDALRRRNAAIEER 62

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FPDL R + P+    +IG   +    KVTH+IP LSL+  ++ +D+R F+ R+ RF +  
Sbjct: 63  FPDLVREDSPSA---RIGAAPSEGFGKVTHAIPMLSLDNAFSDDDVRDFVARVRRFLRLD 119

Query: 122 D-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
               ++  T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I  IP  L   
Sbjct: 120 PLMGALGVTAEPKIDGLSLSLRYEGGRLVSAATRGDGTVGENVTANARTIADIPHRLPAG 179

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238
           +PE++EVRGEVY++  DF ALN  M A G K +ANPRNAA+G LR+LNP DIT  R L F
Sbjct: 180 VPEVVEVRGEVYMAHADFAALNARMAANGGKVFANPRNAAAGSLRQLNP-DITAARPLKF 238

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +  G+ SE+    Q EM+  +   GFPVN  +    +   ++  Y+ ++  R+TL YD
Sbjct: 239 FAYAWGEMSEVPRATQMEMVSLIGAWGFPVNPRMVLCRSVEELIDVYHAIEEERATLGYD 298

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD   LQ +LG  +RSPRW I+HKF  ++A T L DI+IQ+GRTG LTPVA+L
Sbjct: 299 IDGVVYKVDRLDLQARLGFVSRSPRWAIAHKFPAEKAFTILRDIEIQVGRTGALTPVAKL 358

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GG +++NATLHNEDYI+G+   G+ +RGG+D+R+GD V ++RAG+VIP+V+D+ +
Sbjct: 359 EPVTVGGVVVSNATLHNEDYIRGIGQDGEPIRGGKDLRIGDTVQIQRAGDVIPQVIDVDL 418

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R  DA PF+FP+ CP+C S  VR++N KTG+  A  RCTGGL C+AQ  E+LKHFVSR
Sbjct: 419 AKRPADAVPFAFPTVCPVCGSHAVREINAKTGRPDAVRRCTGGLVCAAQAKEKLKHFVSR 478

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-KIENILGFGDVSVTN 537
           +AF+IEGLG +Q++FF+        IR PADIFTL+ R   S   K++N  G+G+ S  N
Sbjct: 479 NAFDIEGLGDKQVEFFYDLPPEEGGIRTPADIFTLEARDAASPIRKLKNRDGWGETSARN 538

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L+ +I+ RR + L RFIF+LGIRHVG   A+ LA+ Y S+  FA  +     H +D W  
Sbjct: 539 LFAAIDARRRVDLNRFIFALGIRHVGEGNAKLLARAYGSWDAFAAAMRAAADHGSDAWAE 598

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           L  +  VG+++A+A+V+F+  P N  A++ALL EV+P          S +  K +VFTG 
Sbjct: 599 LNAIDGVGEVVAEAVVQFFAEPHNREALDALLAEVTPLDAEKVAAEGSPVAGKTVVFTGA 658

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+++ R +A+    +LGA V+  +S+KT +++ G   GSKL+ AQ+L ++++ E+ +  L
Sbjct: 659 LERMTRDEAKAMAERLGAKVAGSVSKKTSLVVAGPGAGSKLKTAQELDIEVITEDDWFDL 718

Query: 718 L 718
           +
Sbjct: 719 V 719


>gi|304392246|ref|ZP_07374188.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130]
 gi|303296475|gb|EFL90833.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130]
          Length = 716

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 311/717 (43%), Positives = 458/717 (63%), Gaps = 12/717 (1%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R+++P   L+ EQA +EL++L  EI+ HD  Y+    P I D  YD L++R  AI   FP
Sbjct: 7   REIVP-RKLTDEQAAEELAALASEIAEHDARYHNDDAPTISDGAYDTLRKRNTAIEERFP 65

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           DL R + P+   N +G  +     K+TH +P LSL+  ++  D+  F   + RF   K+ 
Sbjct: 66  DLVREDSPS---NNVGSPVQSKFDKITHKVPMLSLDNAFDDGDVADFSASVRRFLNWKEG 122

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIP 182
           + + FT EPKIDG  + +RYE+G+ V AA RGDG  GE+V+A  R +  IPR LS  N+P
Sbjct: 123 DPLTFTAEPKIDGLSLALRYERGELVSAATRGDGQVGENVTANARTVKDIPRKLSGGNVP 182

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH 241
           +I+E+RGEVYI K DF ALN EM A G++ Y NPRN A+G LR+L+     +R L FF +
Sbjct: 183 DIVEIRGEVYIGKADFAALNVEMEAAGKQLYVNPRNTAAGSLRQLDSRITASRPLKFFAY 242

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+ S++ A  Q+ M+++M   GF  N    +  +   +V++Y  ++  R+ L YDIDG
Sbjct: 243 AWGEMSKLPADTQFAMIEQMAAWGFSTNPLTARLESVEALVAHYRTIEESRAGLDYDIDG 302

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD+  LQ +LG  +R PRW I+HKF  + A+T L +I+IQIGRTG L+PVARL+PV
Sbjct: 303 VVYKVDDLGLQGRLGFASRVPRWAIAHKFPAELATTILREIEIQIGRTGALSPVARLDPV 362

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG +++NATLHNEDYI G+ ++G+ +R GRD+R+GD V + RAG+VIPKV+D+ +++R
Sbjct: 363 TVGGVVVSNATLHNEDYIAGVGSNGEPIREGRDLRIGDTVTIFRAGDVIPKVMDVDLSKR 422

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               +PF FP+ CP C S  VR ++ KTG+  +  RCTGG  C AQ +E +KHFVSR+AF
Sbjct: 423 TA-KEPFEFPTVCPACGSPAVRPIDEKTGRADSVRRCTGGFICPAQAVEGIKHFVSRNAF 481

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+G G +Q + F +       +  PADIFTL+ R + S  ++EN  G+G  S   L+D+
Sbjct: 482 DIDGFGDKQAELFHE----LGMVMNPADIFTLRERDKRSLKRLENRDGYGKTSANKLFDA 537

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I+ RR I L RFIF+LGIRHVG   A+ LA++Y         I+       + W+ ++ +
Sbjct: 538 IDDRRKIDLHRFIFALGIRHVGEGNAKLLARHYRDADTLLAAIDAAQDREGEAWVEMLDI 597

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
              G+  A A+++F  +P     V+ALL EV+P+      + SS I  K +VFTGTL++ 
Sbjct: 598 DGFGETAATALLDFMADPNRRGVVDALLTEVTPNPVEQVAS-SSPIAGKTIVFTGTLEQT 656

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A+    +LGA VS  +S KTD+++ G+  GSKL+KA +LGV  ++E+ +L L+
Sbjct: 657 TRSEAKAVAERLGAKVSGSVSAKTDLLVAGEKAGSKLKKAAELGVDTLDEQGWLDLV 713


>gi|323136604|ref|ZP_08071685.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242]
 gi|322397921|gb|EFY00442.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242]
          Length = 705

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 300/714 (42%), Positives = 463/714 (64%), Gaps = 29/714 (4%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + ++ LS  +AR E + L ++I+ +D+ YY+   P++ D+EYDA +RR +A+  AFP+L 
Sbjct: 10  LSVDELSPAEARAEHARLGEDIARYDEAYYREDAPLVPDAEYDAARRRYEALEKAFPELV 69

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P     K+G + +    KV H++P LSL  +++ E++  F+ R+ RF    +   +
Sbjct: 70  ---TPESLTRKVGAKPSEKFAKVKHAVPMLSLGNVFSDEEVFDFVARVRRFLGLGERARL 126

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG   ++RYE G+   AA RGDG+ GEDV+A IR +  IP  L  + P+++E
Sbjct: 127 AFTAEPKIDGLSCSLRYEGGRLAQAATRGDGYEGEDVTANIRTLREIPHKLHGDAPDVLE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY++  DF ALN+   A G+ P+ANPRNAA+G LR+L+P     R L+FF +G G+
Sbjct: 187 VRGEVYMTHADFAALNERQTAAGKPPFANPRNAAAGSLRQLDPKITAGRPLHFFAYGWGE 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE+  + Q+ +L+    LG  VN   R  +    ++++Y  +++ R+TL YDIDG+VYK
Sbjct: 247 ASELPGETQWSVLEAFGRLGLKVNPLTRLCDGAEEMLAHYRAIEARRATLGYDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ SLQ++LG  +R+PRW  +HKF  ++A+T L DI+IQ+GRTG LTPVARLEPV +GG
Sbjct: 307 VDDISLQERLGFVSRAPRWAAAHKFPAERATTILRDIEIQVGRTGALTPVARLEPVTVGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNED I             +DIRVGD V+V+RAG+VIP++V+++  +R   A
Sbjct: 367 VVVSNATLHNEDEI-----------ARKDIRVGDTVVVQRAGDVIPQIVEVVTEKRPHGA 415

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P+ FP  CP C S  +R+++ KTG+     RCTG L C AQ +ERLKHF SR+AF+IEG
Sbjct: 416 KPYHFPHVCPRCGSAALREIDEKTGEADVVRRCTGSLVCPAQAVERLKHFASRNAFDIEG 475

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q+++F+   D    I+  +DIFTL+ R + S TKI+N  GFG+ SV NL+ +I  R
Sbjct: 476 LGDRQIEYFY---DEGL-IKTASDIFTLEERDRASLTKIKNREGFGETSVRNLFAAIEAR 531

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I + RF+++LGIRHVG   AR LA+++  +++  +E         +    +  +  VG
Sbjct: 532 RTIPINRFLYALGIRHVGETNARRLARHFGDFESL-RETAREADPGTEARARIDSIDGVG 590

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            ++A+A+ +F+  P N   ++ALL +V+    P I       SS +  K +VFTG L+++
Sbjct: 591 PVVAEALHDFFAEPHNEKELDALLSQVTLEPMPEIAS-----SSPVAGKTVVFTGALERL 645

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            R +A+    + GA V+A +S+KTD+++ G   GSKL KAQ+LG+++++E+++ 
Sbjct: 646 TRDEAKAQAERFGAKVAASVSKKTDLVVAGPGAGSKLAKAQELGIEVISEDEWF 699


>gi|240142614|ref|YP_002967127.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
 gi|240012561|gb|ACS43786.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
          Length = 712

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 309/715 (43%), Positives = 448/715 (62%), Gaps = 18/715 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +P+  LS E AR E ++L  EI+ HD+ Y+    PI+ D+EYDAL+RR   I  A P LA
Sbjct: 10  VPVAELSNEDARIEHAALASEIAEHDERYHGQDAPIVTDAEYDALRRRAAEIEAAHPALA 69

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              +      K+G + +    K+ H+IP LSLE  +  ED+ +F  RI RF        +
Sbjct: 70  AESEV---AKKVGAKPSSRFGKIVHAIPMLSLENAFVDEDVAEFAVRIRRFLDLPGGAPL 126

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  ++IRYE  + V+AA RGDG +GE+V+A    I  IP  L  + P+++E
Sbjct: 127 AFTAEPKIDGLSLSIRYENRRLVHAATRGDGAAGENVTANALTIQDIPDDLPRDAPDVVE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           +RGEVY+SK+ F A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  G+
Sbjct: 187 IRGEVYLSKSAFAAINARQEAAGKPLFANPRNAAAGSLRQLDPKITASRPLKFFAYSWGE 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A+ Q+  L +    GF VN   +  +T   ++  Y  + ++R+ L YDIDG+VYK
Sbjct: 247 TSAPIAEAQHAALARFDDWGFYVNPLTKLCSTVEEMLEVYRAIGAMRADLEYDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ++LG  +R+PRW ++HKF  +QA T L  I+IQ+GRTG LTPVA+L P+ +GG
Sbjct: 307 VDDLALQRRLGFVSRAPRWAVAHKFPAQQAETVLEAIEIQVGRTGSLTPVAKLRPLTVGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYIKGLD+ G+ +R GRD+RVGD V+V+RAG+VIP++VD+  ++R    
Sbjct: 367 VVVSNATLHNEDYIKGLDSDGQPIREGRDLRVGDHVIVQRAGDVIPQIVDVDPSKRSEGT 426

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP  CP+C S  VR+ NPK+G+  +  RCTGGL C AQ +ER+KHF SR A +IEG
Sbjct: 427 APYEFPKLCPVCGSHAVREANPKSGREDSVRRCTGGLICQAQAVERIKHFASRGAMDIEG 486

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG ++++ F + +     +R P+DIFTL+RRQ      +    G G  SV NL+ +I+ R
Sbjct: 487 LGDERIEDFHRDD----LLRTPSDIFTLRRRQDAGEIDLTAREGMGPTSVANLFAAIDAR 542

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF--AQEINNIIAHNNDDWLSLIRVPL 603
           R + LER I  LGIRHVG   A+ LAK Y S      A ++ + +    D    LI    
Sbjct: 543 RKVPLERLIHGLGIRHVGETNAKLLAKAYRSLPAVREAAQVPDALKRMVD----LING-- 596

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G ++A A+VEF+  P N   V+ LL EV  +     K   S +  K +VFTG+L ++ R
Sbjct: 597 IGPVVAAAVVEFFLEPHNSEEVDRLLAEVGTTAPAAAKE--SPVTGKTIVFTGSLVRMSR 654

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+     LGA  +  +S+KTD+++ G   GSKL KA+Q GV++++E  +  L+
Sbjct: 655 DEAEAMAEGLGARTAGTVSKKTDLVVAGPGAGSKLAKAEQFGVRVIDENGWFDLV 709


>gi|166216283|sp|Q07PR9|DNLJ_RHOP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 715

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 313/727 (43%), Positives = 460/727 (63%), Gaps = 26/727 (3%)

Query: 3   KRQLIP-IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K + +P +  L+  +A+ EL  L  EI  HD  YYQ   P + D++YDAL+RR + I H 
Sbjct: 4   KSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHK 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L     P+    K+G        KV H++P LSL   ++ +++ +F+ R+ RF    
Sbjct: 64  FPELVSGASPS---QKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLQRVRRFLNLG 120

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
           D+       EPKIDG  +++RYE+G+ V AA RGDG  GEDV+A +R +  IP  L  N 
Sbjct: 121 DEIPAIVA-EPKIDGLSLSLRYEQGELVRAATRGDGSVGEDVTANVRTLKDIPHTLKGNR 179

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239
           IP   E+RGEVY+ K+DFLALN +    G  P+ANPRN+A+G LR+ +     +R L FF
Sbjct: 180 IPAACELRGEVYMLKSDFLALNKKQEEAGEAPFANPRNSAAGSLRQKDVAITASRPLKFF 239

Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +  G+ S E   + Q++ML  +   GF VN  +   ++    + +Y  +   R+ LPYD
Sbjct: 240 AYAWGEFSGETPERTQHDMLGWLDHAGFVVNPEITLCHSVDDALVFYRRIGEERAALPYD 299

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q +LG   R+PRW I+HKFA +QA+T L  I+IQ+GRTG LTPVARL
Sbjct: 300 IDGVVYKVDRLDWQARLGFAGRAPRWAIAHKFAAEQATTILEKIEIQVGRTGALTPVARL 359

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG ++ NATLHNEDYIKG+   G+ +R GRDIRVGD V+++RAG+VIP+VVD+++
Sbjct: 360 APVTVGGVVVQNATLHNEDYIKGVGNDGQPLREGRDIRVGDTVIIQRAGDVIPQVVDVVL 419

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R  DA P+ FP  CP+C S  VR+     G++V   RCTG L C AQ +ERLKHFVSR
Sbjct: 420 DKRPADAVPYEFPQACPVCGSHAVRE----DGEVV--RRCTGALICPAQAVERLKHFVSR 473

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            AF+I+GLG++Q++ F +       ++ P DIFTL+ R   +T K+E + G+G+ SV NL
Sbjct: 474 LAFDIDGLGEKQIELFHERG----WVKEPVDIFTLKTR--NATLKLEELEGYGETSVRNL 527

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---- 594
           + +I+ RR I L R IF+LGIRHVG   A+ LA++Y +   F   +    A   ++    
Sbjct: 528 FAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTIDAFLGAMRAAAAGQTEEGNTS 587

Query: 595 --WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
             +  L  +  +GDI+A+A+VEF+   RN+ A++ALL E+   +   +    S +  K +
Sbjct: 588 EAYQDLDNIGGIGDIVAEAVVEFFAEERNVEALDALLGELDEVLPAAQVKRDSAVAGKTV 647

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTG+L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA++LGV +++E+
Sbjct: 648 VFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDFVVAGEDAGSKLTKARELGVSVLSED 707

Query: 713 QFLFLLQ 719
           ++L L+Q
Sbjct: 708 EWLALIQ 714


>gi|115524134|ref|YP_781045.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53]
 gi|115518081|gb|ABJ06065.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53]
          Length = 730

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 313/727 (43%), Positives = 460/727 (63%), Gaps = 26/727 (3%)

Query: 3   KRQLIP-IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K + +P +  L+  +A+ EL  L  EI  HD  YYQ   P + D++YDAL+RR + I H 
Sbjct: 19  KSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHK 78

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L     P+    K+G        KV H++P LSL   ++ +++ +F+ R+ RF    
Sbjct: 79  FPELVSGASPS---QKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLQRVRRFLNLG 135

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
           D+       EPKIDG  +++RYE+G+ V AA RGDG  GEDV+A +R +  IP  L  N 
Sbjct: 136 DEIPAIVA-EPKIDGLSLSLRYEQGELVRAATRGDGSVGEDVTANVRTLKDIPHTLKGNR 194

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239
           IP   E+RGEVY+ K+DFLALN +    G  P+ANPRN+A+G LR+ +     +R L FF
Sbjct: 195 IPAACELRGEVYMLKSDFLALNKKQEEAGEAPFANPRNSAAGSLRQKDVAITASRPLKFF 254

Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +  G+ S E   + Q++ML  +   GF VN  +   ++    + +Y  +   R+ LPYD
Sbjct: 255 AYAWGEFSGETPERTQHDMLGWLDHAGFVVNPEITLCHSVDDALVFYRRIGEERAALPYD 314

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q +LG   R+PRW I+HKFA +QA+T L  I+IQ+GRTG LTPVARL
Sbjct: 315 IDGVVYKVDRLDWQARLGFAGRAPRWAIAHKFAAEQATTILEKIEIQVGRTGALTPVARL 374

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG ++ NATLHNEDYIKG+   G+ +R GRDIRVGD V+++RAG+VIP+VVD+++
Sbjct: 375 APVTVGGVVVQNATLHNEDYIKGVGNDGQPLREGRDIRVGDTVIIQRAGDVIPQVVDVVL 434

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R  DA P+ FP  CP+C S  VR+     G++V   RCTG L C AQ +ERLKHFVSR
Sbjct: 435 DKRPADAVPYEFPQACPVCGSHAVRE----DGEVV--RRCTGALICPAQAVERLKHFVSR 488

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            AF+I+GLG++Q++ F +       ++ P DIFTL+ R   +T K+E + G+G+ SV NL
Sbjct: 489 LAFDIDGLGEKQIELFHERG----WVKEPVDIFTLKTR--NATLKLEELEGYGETSVRNL 542

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---- 594
           + +I+ RR I L R IF+LGIRHVG   A+ LA++Y +   F   +    A   ++    
Sbjct: 543 FAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTIDAFLGAMRAAAAGQTEEGNTS 602

Query: 595 --WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
             +  L  +  +GDI+A+A+VEF+   RN+ A++ALL E+   +   +    S +  K +
Sbjct: 603 EAYQDLDNIGGIGDIVAEAVVEFFAEERNVEALDALLGELDEVLPAAQVKRDSAVAGKTV 662

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTG+L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA++LGV +++E+
Sbjct: 663 VFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDFVVAGEDAGSKLTKARELGVSVLSED 722

Query: 713 QFLFLLQ 719
           ++L L+Q
Sbjct: 723 EWLALIQ 729


>gi|158421773|ref|YP_001523065.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571]
 gi|190359227|sp|A8IGY0|DNLJ_AZOC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158328662|dbj|BAF86147.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571]
          Length = 739

 Score =  595 bits (1534), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 319/731 (43%), Positives = 468/731 (64%), Gaps = 34/731 (4%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS  +A  E ++L QEI+ HD  YYQ   P+I D++YD L+RR + I   FP L   +  
Sbjct: 18  LSATEASDEHAALSQEIASHDARYYQEDAPVISDADYDRLRRRYEDIEARFPALKNDDSL 77

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    K+G   +    KV H +P LSL+  ++ E++ +F+ R+ RF    +   + FT E
Sbjct: 78  S---RKVGAAPSAKFAKVVHQVPMLSLQNAFSDEEVEEFVARVRRFLNLAESAELAFTAE 134

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PKIDG   ++RYE G  V AA RGDG  GEDV+A +R I  IP R+    +P+II++RGE
Sbjct: 135 PKIDGLSCSLRYEGGVLVRAATRGDGTQGEDVTANVRTIAEIPHRLTGAGVPDIIDIRGE 194

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSE 248
           VY+ K DFLALN      G+  +ANPRNAA+G LR+L+P +ITR   L FF +  G+ +E
Sbjct: 195 VYMGKADFLALNARQEEAGKPVFANPRNAAAGSLRQLDP-EITRSRPLRFFAYAWGQ-AE 252

Query: 249 IFAKG--QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               G  Q+E++   R  G P N    +     G++++Y ++ + R++L YDIDG+VYKV
Sbjct: 253 PGPPGASQHEVVDAFRRFGLPTNPLTIRVTDAAGLLAHYRKIGAERASLGYDIDGVVYKV 312

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D  +LQ++LG  +RSPRW I+HKFA +QA+T +  I+IQ+GRTG LTPVA+L PV +GG 
Sbjct: 313 DSLALQERLGFVSRSPRWAIAHKFAAEQATTVIEAIEIQVGRTGALTPVAKLTPVTVGGV 372

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNEDYI+ +  +G+ +R G DIRVGD V+V+RAG+VIP+VV +++++R   A 
Sbjct: 373 VVSNATLHNEDYIRAIGGNGEEIREGIDIRVGDTVVVQRAGDVIPQVVSVVLDKRPAGAT 432

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP+C S+ VR+++PKTGK  A  RCTGGL C AQ +ERL+HFVSR+AF+IEGL
Sbjct: 433 AYQFPHHCPVCNSQAVREVDPKTGKQDAVRRCTGGLICPAQAVERLRHFVSRNAFDIEGL 492

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++Q   F++ +     I  PADIF LQ R + S +K+EN  G+G  S  NL+ +I  RR
Sbjct: 493 GEKQAHAFYEWK----LIAEPADIFRLQARNEQSLSKLENREGWGRTSAQNLFAAIEARR 548

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-----AQEINNII------------- 588
            I+L+RFIF+LGIRHVG   A+ LA++Y S +         E+   +             
Sbjct: 549 TIALDRFIFALGIRHVGETNAKRLARHYGSVEALRDAAIGAEMPTEMEEASEETPPTRRR 608

Query: 589 -AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
               N+ W  +  +  +G ++A+A+VEF++ P N   VE LLKEV+P       + +S +
Sbjct: 609 KPQGNEVWQEMTDIDGIGAVVAEAVVEFFREPHNRQVVEELLKEVTPQPLEAVAS-TSPV 667

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +VFTG+L+++ R +A+    +LGA V+  +S KTD+++ G   GSKLEKA+ LGVK
Sbjct: 668 SGKTVVFTGSLERMTRDEAKAMAERLGAKVAGSVSGKTDLLVAGPGAGSKLEKARSLGVK 727

Query: 708 IMNEEQFLFLL 718
            + E+++  L+
Sbjct: 728 TITEDEWFDLV 738


>gi|92116846|ref|YP_576575.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14]
 gi|123083742|sp|Q1QNT2|DNLJ_NITHX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91799740|gb|ABE62115.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14]
          Length = 714

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 314/720 (43%), Positives = 459/720 (63%), Gaps = 24/720 (3%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+++L+  QA+ E   L  EI  H++ YYQ   P + D+ YDAL++R +AI   FPDL  
Sbjct: 10  PVDSLTRAQAKIEHKRLALEIETHNERYYQKDAPTVSDAAYDALRQRLEAIEARFPDLIT 69

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +   N P   +G        KV H++P LSL   ++ E++ +F+ RI RF +   D+   
Sbjct: 70  A---NSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDEEVAEFVERIQRFLKLGPDDIPA 126

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
              EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L   NIP   E
Sbjct: 127 IVAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPHNLRGRNIPTACE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           +RGEVY+ K DFLALN +    G   +ANPRN+A+G LR+ +     +R L FF +  G+
Sbjct: 187 LRGEVYMLKTDFLALNKKQEDAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAYAWGE 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            ++  A  Q++ML+ ++ +GF VN  +   N+   ++ +Y ++   R++L YDIDG+VYK
Sbjct: 247 MTDRPADTQHDMLEWLKDVGFKVNPLIELCNSVEKVLKFYRKIGEQRASLGYDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG +TPVARLEPV IGG
Sbjct: 307 VDRLDWQERLGFVSRSPRWAIAHKFAAEQATTILKGIDIQVGRTGAMTPVARLEPVTIGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHNEDYIKG+   G+ +R G D+RVGD V+V+RAG+VIP+VV +++++R   A
Sbjct: 367 VVVQNATLHNEDYIKGIGNDGQPIRDGVDLRVGDTVVVQRAGDVIPQVVSVVIDKRPNSA 426

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           QP++FP  CPIC S  VR+         A  RCTG L C AQ +ERLKHFVSR AF+I+G
Sbjct: 427 QPYAFPHTCPICGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRLAFDIDG 480

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++Q+  F +       I+ PADIFTL  R++    K+E + GFG+VSV NL+ +I+ R
Sbjct: 481 LGEKQIQEFHERG----WIKEPADIFTL--RERNPKIKLEELEGFGEVSVRNLFAAIDAR 534

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------WLSLI 599
           R I L R IF+LGIRHVG   A+ LA++Y     F   ++   A   DD      +  L 
Sbjct: 535 RTIELNRLIFALGIRHVGEGNAKLLARHYGGIDAFRAAMSEAAAAQTDDGNASEAYADLN 594

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  +GDI+A A+VEF+   RN+ A+  LL+E+        +N  S +  K +VFTG+L+
Sbjct: 595 NISGIGDIVADAVVEFFAETRNVKALNDLLEEIEVLPVAQARN-DSAVAGKTVVFTGSLE 653

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           K  R +A+    ++GA VS  +S+KTD+++ G   GSKL+ A++ GV++++E+++L L++
Sbjct: 654 KFTRDEAKASAERMGAKVSGSVSKKTDLVVAGPGAGSKLKDAEKHGVQVISEDEWLKLIE 713


>gi|182677699|ref|YP_001831845.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|254781257|sp|B2IGH4|DNLJ_BEII9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|182633582|gb|ACB94356.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 699

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 300/714 (42%), Positives = 453/714 (63%), Gaps = 21/714 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE+LS  QA++E   L ++I+ HD  YYQ   P + D+EYDAL+RR +A+  AFP+L  
Sbjct: 6   PIESLSPAQAKREHRRLGEQITEHDRLYYQEDAPRVSDAEYDALRRRYEALETAFPELVS 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +E       KIG        K+ H +P LSL  I++ E++ +F+ R+ RF     D  + 
Sbjct: 66  AESLT---KKIGAAPAEKFAKIIHKVPMLSLANIFSDEEVGEFVARVRRFLGLGADAPLA 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            + EPKIDG   ++RYE G  V AA RGDG+ GEDV+A +R I  IP  L  + PEI+EV
Sbjct: 123 ISAEPKIDGLSCSLRYEGGYLVQAATRGDGYEGEDVTANVRTIQEIPHQLQGHAPEILEV 182

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGEVY++  DF ALN+   A G+  +ANPRN+A+G LR+L+P     R L+FF +  G+ 
Sbjct: 183 RGEVYMTHADFAALNERQEAAGKTIFANPRNSAAGSLRQLDPKVTAGRPLHFFAYAWGEA 242

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q  M+   +  G PVN  ++  ++   ++++Y+++++ R+ L YDIDG+VYKV
Sbjct: 243 SEEPADTQMGMVTAFKAFGLPVNPLMQLCHSAEDLIAHYHDIEARRALLDYDIDGVVYKV 302

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQK+LG  +R+PRW  +HKF  ++A T L DI+IQ+GRTG LTPVARLEP+ +GG 
Sbjct: 303 NSIALQKRLGFVSRAPRWATAHKFPAEKAVTLLRDIEIQVGRTGALTPVARLEPITVGGV 362

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNED I             +DIR+GD V+++RAG+VIP+++  I+++R  DAQ
Sbjct: 363 VVSNATLHNEDEI-----------ARKDIRIGDMVMIQRAGDVIPQILGPILDKRPQDAQ 411

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP+C S  +R+++PKTG      RCTGGL C+AQ +ERLKHF SR+AF+IEGL
Sbjct: 412 PYEFPQVCPVCGSAAIREIDPKTGTADVVRRCTGGLVCAAQVVERLKHFASRNAFDIEGL 471

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++ F+        I  P DIFTLQ R   S  K+++  G+G+ SV NL+ +I  RR
Sbjct: 472 GDKQIEQFYHDG----LIHTPVDIFTLQERDARSLKKLKDREGYGETSVRNLFQAIEARR 527

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I + RFI++LGIRHVG   AR  A+ + ++    + + +     +++   L  V   G 
Sbjct: 528 HIPVNRFIYALGIRHVGETNARRAARAFGTFDAL-RAVASRAEEGSEERSELTNVEGFGP 586

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+AI +F+    N   ++ LL++V+P          S +  K +VFTG L+ + R +A
Sbjct: 587 VVAEAIFDFFHEQHNQDVLDGLLEQVTPEPMEAVAK-ESPVAGKTVVFTGALEHMTREEA 645

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +    +LGA V+  +S+KTD+++ G   GSKL KA +L ++ ++EE +L L+ +
Sbjct: 646 KAQAERLGAKVAGSVSKKTDLVVAGPGAGSKLAKAAELNIETISEEDWLKLVGE 699


>gi|75675255|ref|YP_317676.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255]
 gi|123773282|sp|Q3STR7|DNLJ_NITWN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|74420125|gb|ABA04324.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255]
          Length = 716

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 310/726 (42%), Positives = 461/726 (63%), Gaps = 22/726 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +   P+++L+  QAR E   L  EI  H++ YYQ   P + D+ YDAL+RR +AI   
Sbjct: 4   KSKTPPPVDSLTRSQARVEHKRLALEIETHNERYYQQDAPTVSDATYDALQRRLEAIEAR 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FPDL  +   + P   +G        KV H++P LSL   ++  ++ +F+ RI RF +  
Sbjct: 64  FPDLVTA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDAEVAEFVERIRRFLKLG 120

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LN 180
            D+      EPKIDG  +++RYE G  V AA RGDG +GEDV+A +R I  +P  L+  N
Sbjct: 121 ADDMPAIVAEPKIDGLSLSLRYENGDLVRAATRGDGFTGEDVTANVRTIADVPHKLNGHN 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP   E+RGEVY+ K DFLALN +    G   +ANPRN+A+G LR+ + +   +R L FF
Sbjct: 181 IPTACELRGEVYMLKEDFLALNKKQQEAGDTVFANPRNSAAGSLRQKDVSITASRPLKFF 240

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ ++  A+ Q +ML+ +R +GF VN  ++  ++   ++++Y  +   R+TL YDI
Sbjct: 241 AYAWGEMTDRPAETQNDMLEWLRDVGFIVNPLIQLCHSVDEVLAFYRRIGEQRATLGYDI 300

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +RSPRW I+HKFA +QA T L  IDIQ+GRTG +TPVARLE
Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQAMTILRGIDIQVGRTGAMTPVARLE 360

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ NATLHNEDYI+GL   G+ +R G D+R+GD V+V+RAG+VIP+VV +I+ 
Sbjct: 361 PVTVGGVVVQNATLHNEDYIRGLGNDGQPIRDGIDLRIGDTVVVQRAGDVIPQVVSVIIE 420

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  +A+ + FP  CPIC S  VR+         A  RCTG L C AQ +ERLKHFVSR 
Sbjct: 421 KRPANAKRYEFPDRCPICGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 474

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++Q+  F+   D    +  P DIFTLQ R   +  K+ +  G+GDVSV NL+
Sbjct: 475 AFDIDGLGEKQIQEFY---DDGLVMH-PVDIFTLQERDARAENKLRDRDGYGDVSVRNLF 530

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI------NNIIAHNND 593
            +I+ RR I L R IF+LGIRHVG   A+ LA++Y S ++F   +           ++++
Sbjct: 531 AAIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGSIESFRSAMTEAAAAQTEAGNDSE 590

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
            +  L  +  +GDI+A A+VEF+  PRN+ A+  LL+E+   +   +    S +  K +V
Sbjct: 591 AYADLTNIGGIGDIVADAVVEFFAEPRNVKALNDLLEEIE-VLPVAQARSDSAVAGKTVV 649

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTG+L+K  R +A+    ++GA  S+ +S+KTD+++ G   GSKL+ A++ GVK+++E++
Sbjct: 650 FTGSLEKFTRDEAKASAERVGAKTSSSVSKKTDLVVAGPGAGSKLKDAEKFGVKVISEDE 709

Query: 714 FLFLLQ 719
           +L L++
Sbjct: 710 WLKLIE 715


>gi|90418183|ref|ZP_01226095.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337855|gb|EAS51506.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1]
          Length = 703

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 303/712 (42%), Positives = 447/712 (62%), Gaps = 26/712 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L  ++A  EL  L  EI+ HD  YY+   P + D+EYD L+RR  AI   FP+L R 
Sbjct: 6   VETLDRDEAAAELERLAGEIAAHDRAYYREDAPTVTDAEYDTLRRRNAAIEARFPELIRE 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+    ++G E++    K+ H++P LSL+  ++ ED+  F  R+ RF +  DD  +  
Sbjct: 66  DSPSA---RVGTEVSEKFGKIRHAVPMLSLDNAFSDEDVADFAKRVRRFLKLDDDAPLAI 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYEKG+ V AA RGDG +GEDV+   R I  IP  L    PE+ EVR
Sbjct: 123 TAEPKIDGLSLSLRYEKGELVSAATRGDGATGEDVTRNARTIDDIPNRLKGKAPEVFEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKT 246
           GEVY+S   F  LN      G+  YANPRNAA+G LR+L+   ITR   L FF +  G+ 
Sbjct: 183 GEVYMSHAAFTDLNARQAEEGKPVYANPRNAAAGSLRQLD-AGITRARKLQFFAYAWGEA 241

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE+  + Q E++  +   GFPVN  +++  T  G++++Y+ ++  R+ L YDIDG+VYKV
Sbjct: 242 SEVPGETQTEVVAAIAGFGFPVNERMKRFETIEGLIAHYHAIEENRAGLGYDIDGVVYKV 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQK+LG  +RSPRW I+HKF  +QA+T L  I+IQ+GRTG LTPVA+L+PVN+GG 
Sbjct: 302 DDLALQKRLGFVSRSPRWAIAHKFPAEQATTVLRAIEIQVGRTGALTPVAKLDPVNVGGV 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHN + I+ L           D+RVGD V ++RAG+VIP+V+ I+ ++R  DA+
Sbjct: 362 MVANATLHNAEEIERL-----------DVRVGDTVQIQRAGDVIPQVLGIVADKRPEDAE 410

Query: 427 PFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           PF+FPS CP   ++ VVR+    +G      RCTG  AC  Q+ E LK FVSR AF+IEG
Sbjct: 411 PFAFPSVCPCELKTDVVRE-ETASGAQSVVRRCTGEFACPFQRREHLKLFVSRKAFDIEG 469

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q+D F+  +DP F +R PADIF +  R Q    K+++  GFG+VS  NL+ +I  R
Sbjct: 470 LGDKQIDLFY--DDPDFQVRTPADIFRMHGRNQEGLKKLKDKEGFGEVSAKNLFAAIEAR 527

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I L+R IFSLGIRHVG   A++LA+ Y +++ F +    + A + +    +  +  +G
Sbjct: 528 RTIPLDRLIFSLGIRHVGETTAKTLARAYGTFEAFHEAALKVAAGDEEASGEMDALDDIG 587

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
             +  A   F+    N+  VE L+ E  V P+    +   +S +  + +VFTG+L+K+ R
Sbjct: 588 GAVITATARFFSEDHNLKLVEDLVAELDVQPA---EQPAATSPVSGQTIVFTGSLEKMTR 644

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A+     LGA V+  +S+KTD+++ G   GSKL+KA +LGV++++E+ + 
Sbjct: 645 DEAKAMAEGLGAKVAGSVSKKTDLVVAGPGAGSKLKKAAELGVEVIDEDAWF 696


>gi|83858905|ref|ZP_00952427.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633]
 gi|83853728|gb|EAP91580.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633]
          Length = 695

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 303/716 (42%), Positives = 456/716 (63%), Gaps = 30/716 (4%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L  + AL+ ++A  EL  L +EIS HD  YY+   P I D+ YDAL+ R  AI   FP+L
Sbjct: 5   LKDVNALTSDEAASELERLAREISRHDKAYYEKDAPKISDAAYDALRARNSAIEARFPEL 64

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R + P+   +++G + +    +V H++P LSL   +  +D+R F  RI RF   KD+  
Sbjct: 65  KRKDSPS---DRVGAKPSEQFGEVVHAVPMLSLGNAFEDQDVRDFADRIRRFLNLKDEK- 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + FT EPKIDG    +RYE+G+ V  A RGDG +GE+V+A ++ I  IP  L  ++P+++
Sbjct: 121 LVFTAEPKIDGLSANLRYEQGELVIGATRGDGRTGENVTANLKTIADIPHRLEGDVPDVL 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEVY+S  DF  LN      G+  Y NPRNAA+G LR+++P     R L FF +  G
Sbjct: 181 EVRGEVYMSHADFAQLNAMQEERGKPAYKNPRNAAAGSLRQIDPNVTAERPLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + SE  A+ QY+ ++++  LGF +N+ + +  +   ++++Y  +++ R+ L YDIDG+VY
Sbjct: 241 ELSEPLAETQYDAVKRLGQLGFVINDDMVRVESVEDVLAHYRALEAKRADLGYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q++LG  AR+PRW I+HKF+ ++A TRL  I+IQ+GRTG LTPVA+LEPV +G
Sbjct: 301 KVDRLDWQERLGFVARAPRWAIAHKFSPEKAVTRLNAIEIQVGRTGALTPVAKLEPVTVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHN+D I+            +D+RVGD V+++RAG+VIP+VV++++++R   
Sbjct: 361 GVVVSNATLHNQDEIE-----------RKDVRVGDTVIIQRAGDVIPQVVEVVLDKRPEA 409

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+PF+FP+ CP+C S  VR+     G++V   RCTGGL C AQ +ERLKHFVSR AF+IE
Sbjct: 410 AEPFAFPTLCPVCGSHAVRE----EGEVV--RRCTGGLICDAQAVERLKHFVSRKAFDIE 463

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK--IENILGFGDVSVTNLYDSI 542
           GLG +Q++ FF        ++ PADIFTL+ R +       I+   G+G+ S  NL+ SI
Sbjct: 464 GLGAKQIEAFFHE----GLVKQPADIFTLRARNEAGEINPPIQTREGWGERSAANLFGSI 519

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           ++RRNI L RF+F+LGIRHVG E AR +A+ + S+Q   +E         + + + + + 
Sbjct: 520 DQRRNIGLARFLFALGIRHVGEETARLIARSFTSWQ-VVRETAEAANEPGEAFAAFMDID 578

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G+   +A+ EF+    N  A+ ALL  V+      +    S +  K +VFTG+L++  
Sbjct: 579 GIGETAVKALAEFFAESHNQDALNALLAHVTVEDA-EQVAAESPVAGKTVVFTGSLERFT 637

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+     LGA VS  +S KTDI++ G   GSKL+KAQ+LGV+ M E+++L L+
Sbjct: 638 RDEAKAKAQSLGAKVSGSVSGKTDILVAGPGAGSKLKKAQELGVQTMTEDEWLALI 693


>gi|316933200|ref|YP_004108182.1| NAD-dependent DNA ligase [Rhodopseudomonas palustris DX-1]
 gi|315600914|gb|ADU43449.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris DX-1]
          Length = 715

 Score =  585 bits (1508), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 308/728 (42%), Positives = 457/728 (62%), Gaps = 27/728 (3%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           +KK     I  L+  +A+ EL  L   I  HD  YYQ   P I D++YDAL+RR +AI  
Sbjct: 3   VKKNPAPDIATLTKAKAKVELMRLRLVIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQ 62

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP+L  +   + P   +G        KV H++P LSL   +  +++ +F  R+ RF + 
Sbjct: 63  KFPELVSA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKL 119

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
            D  +I    EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L   
Sbjct: 120 DDVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGK 177

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNF 238
           +IP   E+RGEVY+ K DFLALN      G   +ANPRN+A+G LR+ +     +R L F
Sbjct: 178 HIPAACELRGEVYMLKQDFLALNKRQEEAGETVFANPRNSAAGSLRQKDVAVTASRPLKF 237

Query: 239 FVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           F +  G+ S+  +    Q++MLQ +  +GF VN  +R  +T   I+++Y E+   R++LP
Sbjct: 238 FAYAWGEMSDYPMEEPTQHKMLQWLDHVGFVVNPLIRPCHTVEEILAFYREIGEQRASLP 297

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           YDIDG+VYKVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG +TPVA
Sbjct: 298 YDIDGVVYKVDRLDYQERLGFISRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVA 357

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           RL+PV +GG ++ NATLHNEDYIKG+   G  +R G DIR GD V+V+RAG+VIP++V +
Sbjct: 358 RLQPVTVGGVVVQNATLHNEDYIKGIGNDGSPLRDGVDIREGDTVVVQRAGDVIPQIVSV 417

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           ++++R   A+P+ FP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFV
Sbjct: 418 VLDKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFV 471

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR AF+I+GLG++Q++ F +       ++ PADIFTL+ R   +  K+E + G+G+ SV 
Sbjct: 472 SRLAFDIDGLGEKQIELFHERG----WVQEPADIFTLKAR--NAELKLEQLEGYGETSVR 525

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------AQEINNIIAH 590
           NL+ +I+ RR I L R +F+LGIRHVG   A+ LA++Y +   F      A +      +
Sbjct: 526 NLFAAIDARRTIELHRLVFALGIRHVGEGNAKLLARHYGTLDAFLTAMRAAADAQTEEGN 585

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
            ++ +  L  +  +GD++A+A+VEF+   RN+ A++ALL E++  +   +    + +  K
Sbjct: 586 TSEAYQDLDNIAGIGDVVAEAVVEFFAEERNVKALDALLAELTEVLPAEQARRDTAVAGK 645

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +VFTG+L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ 
Sbjct: 646 TVVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLT 705

Query: 711 EEQFLFLL 718
           E+++L L+
Sbjct: 706 EDEWLALI 713


>gi|217979603|ref|YP_002363750.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2]
 gi|254781370|sp|B8ETN6|DNLJ_METSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217504979|gb|ACK52388.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2]
          Length = 700

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 304/715 (42%), Positives = 453/715 (63%), Gaps = 26/715 (3%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PI+A+++ QAR+E S L  EI+ HD  YY+   P + D+EYD L+RR   +  AFP+LA 
Sbjct: 5   PIDAMTLAQARREHSRLGAEIAAHDARYYREDAPTVSDAEYDRLRRRYGELESAFPELA- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+    K+G   +    K+ H IP LSL  +++  ++  F+ R+ RF     + S+ 
Sbjct: 64  --SPDSLTKKVGAAPSEKFAKIRHRIPMLSLGNVFSEAEVEDFVARVRRFLGLPTEASLA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            T EPKIDG   ++R+E G+FV AA RGDG  GEDV+A +R I  IP  L    PE++EV
Sbjct: 122 ITAEPKIDGLSCSLRFENGEFVQAATRGDGFEGEDVTANVRTIAEIPARLKGEPPEVLEV 181

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245
           RGEVY++  DF A+N      G+  +ANPRNAA+G LR+L+P +IT  R L+FF +  G+
Sbjct: 182 RGEVYMTHADFAAMNVRQQEAGKPLFANPRNAAAGSLRQLDP-NITAGRPLHFFAYAWGE 240

Query: 246 TSEIFAKG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  G Q  M+   +  G PVN  +   ++   +++ Y  ++  R+ L YDIDG+VY
Sbjct: 241 ILPAPPAGTQMGMVAAFKSYGLPVNPLMVLCHSAEELIAKYRSIEEKRAALGYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ++LG  +RSPRW ++HKF  +QA+T L DI+IQ+GRTG LTPVARL+PV +G
Sbjct: 301 KVDSLVLQERLGFVSRSPRWAVAHKFPAEQATTVLRDIEIQVGRTGALTPVARLDPVTVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  + NATLHNED I             +D+R+GD V ++RAG+VIP+V+ +++N+R  +
Sbjct: 361 GVTVANATLHNEDEI-----------ARKDVRIGDTVRIQRAGDVIPQVLGVVLNKRPAE 409

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P+ FP  CPIC S  +R+++ KTG      RCTGGL C AQ +ERLKHF SR+A +IE
Sbjct: 410 AKPYVFPDHCPICGSAAIREIDEKTGVADVVRRCTGGLICPAQAIERLKHFASRNALDIE 469

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +Q++ F+        I  PADIFTL+ R + +  K+++  G+G+ S  NL+ +I +
Sbjct: 470 GLGDKQIEQFYHDG----LITKPADIFTLEARDKAALKKLKDREGYGETSTRNLFRAIEQ 525

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RR  +L RFI++LGIRHVG   AR LA+++ S+    +E     A  ++    +  +  V
Sbjct: 526 RRAPALNRFIYALGIRHVGETNARRLARHFGSFSAL-RETGRAAAPGSEARAEINNIEGV 584

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663
           G+++A+A+ +F+  P N  A++ALL  V+P     E+ VS + +  K +VFTG L+++ R
Sbjct: 585 GEVVAEAVADFFAEPHNEEALDALLAHVNPQP--MEEIVSDTPVAGKTVVFTGALERMTR 642

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+    +LGA V+A +S+KTD++I G   GSKL KA +LGV+ ++EE +L L+
Sbjct: 643 DEAKAMAERLGAKVAASVSKKTDLVIAGPGAGSKLAKAAELGVETISEEDWLKLV 697


>gi|260433791|ref|ZP_05787762.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417619|gb|EEX10878.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157]
          Length = 708

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 300/714 (42%), Positives = 448/714 (62%), Gaps = 15/714 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP++ L+ +QA++EL+ L   +   ++ Y+    P I D+EYDALKRR   I   FP L 
Sbjct: 5   IPVQELTEDQAKEELARLASALLRANELYHGQDAPEISDAEYDALKRRNLEIEARFPHLK 64

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R   P+ P  ++G   +    KV HS+  +SL   ++  D+R F+  I ++    +D+  
Sbjct: 65  R---PDSPTEQVGARPSEGFDKVRHSVRMMSLGNAFDETDVRDFVRSIQKYLGLSEDDVP 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G  V AA RGDG  GE+V+A    +  IP+ L+   P+I+E
Sbjct: 122 EFTAEPKIDGLSLSLRYENGTLVQAATRGDGEVGENVTANALTVGDIPKALT-GAPKILE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLG 244
           VRGEVY+S  DF  LN +    G K +ANPRNAA+G LR+L+P ++TR   L FF +  G
Sbjct: 181 VRGEVYMSHEDFARLNQKQSESGGKLFANPRNAAAGSLRQLDP-EVTRSRPLRFFAYAWG 239

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + SE   + Q E L ++  LGF  N   R   +   ++++Y  ++  R+TL YDIDG+VY
Sbjct: 240 ELSEPLGQTQIEGLARLASLGFATNGLTRLCRSVEDMLAHYRTIEEQRATLGYDIDGVVY 299

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +G
Sbjct: 300 KVNDLALQARLGYRSTTPRWAIAHKFPAETAWTRLEAIDIQVGRTGALSPVARLHPVTVG 359

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYI G DA G V+R G+DIRVGD V V RAG+VIPK+ D+ +++R   
Sbjct: 360 GVVVSNATLHNEDYIAGRDAKGNVIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSKRPDW 419

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A PF FP+ CP C S  +R+         +  RCTGG+ C AQ +E+LKHFVSR AF+IE
Sbjct: 420 AVPFEFPTKCPECGSDAIREEGD------SVRRCTGGIICPAQAVEKLKHFVSRKAFDIE 473

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +Q++ F+  +DP   ++ P DIFTLQ+R + +  K+ N  G+G  SV  L+ +I++
Sbjct: 474 GLGTKQIEMFY--DDPDLPVKTPVDIFTLQQRDEANLNKLANRKGWGRQSVAKLWAAIDE 531

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +R + L R +F+LGIRHVG   +  LA +Y S++ F + +         +W  L+ +  V
Sbjct: 532 KRTVPLARLLFALGIRHVGEAASNLLANHYGSWEAFEKAMTAAADFEGPEWQELLSIDGV 591

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+++A+ +V  +        ++ L+ +++           S +  K +VFTGTL+K+ R 
Sbjct: 592 GEVMARTLVSTFAQEAERKTIDDLVAQLNVLDAERPDTSDSPVAGKTIVFTGTLEKMTRA 651

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+     LGA VS  +S+KTDI++ G   GSK +KA +LGVK+++E+++L L+
Sbjct: 652 EAKARAEALGAKVSGSVSKKTDIVVAGPGAGSKAKKAAELGVKVLDEDEWLHLI 705


>gi|27381702|ref|NP_773231.1| DNA ligase [Bradyrhizobium japonicum USDA 110]
 gi|81735382|sp|Q89FV8|DNLJ_BRAJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|27354871|dbj|BAC51856.1| DNA ligase [Bradyrhizobium japonicum USDA 110]
          Length = 716

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 306/721 (42%), Positives = 454/721 (62%), Gaps = 13/721 (1%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K + L  +  L+  QA+ EL  L  E+  HD  YYQ   P + D+EYDAL++R +AI   
Sbjct: 7   KSKPLRDVAELTKAQAKVELMRLALELEGHDKRYYQDDAPTVTDAEYDALRQRFNAIEKR 66

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+   +E P+    K+G   +    KV H++P LSL+  +  ED+R F+ RI RF  K 
Sbjct: 67  FPEFVSAESPS---QKVGAAPSGRFRKVRHAVPMLSLDNAFAEEDVRDFVGRIVRFL-KL 122

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
           DD+ I F+ EPKIDG  +++RYE G+ V AA RGDG  GEDV+A IR +  +P+ L   N
Sbjct: 123 DDDKIDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLEDVPQKLKGRN 182

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P+I EVRGEVY++K  FLALN+   A G   +ANPRN+A+G LR+ +PT   +R L FF
Sbjct: 183 VPDICEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPLGFF 242

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ S +  + Q  M+      GF  N   R  ++   +++++  ++  R+ L YDI
Sbjct: 243 AYAWGEMSAMPEETQTGMIHWFERCGFKTNPLTRLCHSVEELIAFHQRIEEERAELDYDI 302

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +R+PRW I+HKF  +QA T L DI+IQ+GRTG  TPV +LE
Sbjct: 303 DGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAEQAMTVLRDIEIQVGRTGSFTPVGKLE 362

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ N TLHNEDYIKG+   G+V+R GRDIR+GD V+++RAG+VIP+VVD++++
Sbjct: 363 PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVLD 422

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   A+ F FP  CP      V       G+  +  RCTG  AC  Q++E LK FVSR 
Sbjct: 423 KRPKTAKEFHFPKTCPCPLHTDVTREETAAGEEGSRARCTGEFACPYQKIEHLKLFVSRR 482

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++QL +FF   D  F ++ PADIFTL++R   +  K+E I G+G  SV NL+
Sbjct: 483 AFDIDGLGEKQLQYFF---DEGF-VKEPADIFTLEKR--NAKLKLEEIEGYGATSVRNLF 536

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I  RR I+LERF+++LG+RHVG   A +LA+ Y S++ F      +   + +    + 
Sbjct: 537 AAIESRRRIALERFVYALGMRHVGETTALALARGYGSWEAFHDACLKVAKGDEEAMADMD 596

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  +GD + ++I +++    N   VE L KEV        K+ +S +  K +VFTG+L+
Sbjct: 597 ALDQIGDTVIKSIADYFGESHNRGIVERLTKEVEIVDAEKPKS-NSAVAGKTVVFTGSLE 655

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           K+ R +A+    +LGA VS  +S+KTD+++ G   GSKL +A + GVK++ E+++L L+ 
Sbjct: 656 KMTRDEAKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLKLIG 715

Query: 720 Q 720
           +
Sbjct: 716 E 716


>gi|154245706|ref|YP_001416664.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2]
 gi|254782313|sp|A7IG64|DNLJ_XANP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154159791|gb|ABS67007.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2]
          Length = 720

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 305/720 (42%), Positives = 459/720 (63%), Gaps = 27/720 (3%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP++ LS  +A  E  +L QEI+ HD  YY+   P++ D+EYDAL+ R +AI   FP L 
Sbjct: 19  IPVDDLSPAEAASEHKALAQEITGHDAAYYREDAPVVSDAEYDALRHRYEAIEERFPGL- 77

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R ED      K+G   +    KV H +P LSL   ++ E++ +F+ R+ RF     D+ +
Sbjct: 78  RGEDSLS--EKVGAAPSEKFGKVAHKVPMLSLANCFSDEEVVEFVARVKRFLNLGPDDEV 135

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            FT EPKIDG   ++ YE G+   AA RGDG  GEDV+  +R I  IP R+    +P+ I
Sbjct: 136 AFTCEPKIDGLSCSLHYENGRLTVAATRGDGSQGEDVTQNVRTIADIPERLAGKGVPQTI 195

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           +VRGEVY++K DF ALN    A   K +ANPRNAA+G LR+L+ +   +R L FF +  G
Sbjct: 196 DVRGEVYMAKADFEALNARQAAAEEKVFANPRNAAAGSLRQLDSSITASRPLKFFAYAWG 255

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A+ Q+ +++     GF  N  +  A    G++++Y  +++ R+ L YDIDG+VY
Sbjct: 256 EASDLPAETQFGVVEAFARWGFTTNPLMVVAKDAAGLIAHYRSIEAQRALLGYDIDGVVY 315

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+   LQ++LG  +RSPRW I+HKF  +QA+T L DI+IQ+GRTG LTPVA+L PV +G
Sbjct: 316 KVNSLELQRRLGFVSRSPRWAIAHKFPAEQATTVLEDIEIQVGRTGALTPVAKLTPVTVG 375

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++++ATLHNED I             +D+R+GD V+V+RAG+VIP+VV +I  +R   
Sbjct: 376 GVVVSSATLHNEDEI-----------ARKDVRIGDTVVVQRAGDVIPQVVRVIEEKRPAG 424

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           ++P+ FP+ CP C S  VR+++ K+GK+ A  RCTGGL C AQ +ERL+HFVSR+AF+IE
Sbjct: 425 SKPYEFPTHCPACGSHAVREVDTKSGKVDAVRRCTGGLICPAQMVERLRHFVSRNAFDIE 484

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q+  F++       I  PADIFTL+ R   S  ++EN  G+G  S  NL+ +I +
Sbjct: 485 GLGEKQVRAFYEWG----LIASPADIFTLETRNARSLQRLENRDGWGKTSAANLFAAIAE 540

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSL 598
           RR ++++RF+F+LGIRHVG   A+ L ++Y + +         +         N+ W  +
Sbjct: 541 RRTVAVDRFVFALGIRHVGETNAKRLMRHYGTVEALEAGALAAVIPGEEHPKGNEAWQEM 600

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           I +  +GD++A+A++EF+  PRN   V ALLKEV+P     +   +S +  K +VFTG+L
Sbjct: 601 IGIDGIGDVVAEAVIEFFGEPRNREVVTALLKEVTPEP-MEQVAAASPVSGKTVVFTGSL 659

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R +A+    +LGA V+  +S KT++++ G   GSKLEKAQ LGV+++ E+++  L+
Sbjct: 660 EKMTRDEAKAMAERLGAKVAGSVSAKTNLVVAGPGAGSKLEKAQALGVQVITEDEWFELV 719


>gi|166216284|sp|Q6N423|DNLJ_RHOPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 715

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 305/720 (42%), Positives = 452/720 (62%), Gaps = 27/720 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I  L+  +A+ EL  L  EI  HD  YYQ   P I D++YDAL+RR +AI   FP+L  +
Sbjct: 11  IATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNA 70

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P   +G        KV H++P LSL   +  +++ +F  R+ RF +  D  +I  
Sbjct: 71  ---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLDDVPAI-- 125

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
             EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L   +IP   E+
Sbjct: 126 VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKHIPATCEL 185

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+ K DFLALN          +ANPRN+A+G LR+ + T   +R L FF +  G+ 
Sbjct: 186 RGEVYMLKQDFLALNKRQEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFFAYAWGEM 245

Query: 247 SE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           S+  +    Q++MLQ +   GF VN  +   ++    +++Y  +   R++LPYDIDG+VY
Sbjct: 246 SDYPMEEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPYDIDGVVY 305

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG +TPVARL+PV +G
Sbjct: 306 KVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVARLQPVTVG 365

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++ NATLHNEDYIKG+   G+ +R G DIR GD V+V+RAG+VIP++V +++ +R   
Sbjct: 366 GVVVQNATLHNEDYIKGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVMEKRPAG 425

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P+ FP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFVSR AF+I+
Sbjct: 426 AEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDID 479

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++ F +       ++ PADIFTL+ R   +  K+E + G+G+ SV NL+ +I+ 
Sbjct: 480 GLGEKQIELFHERG----WVQEPADIFTLKAR--NAELKLEQLEGYGETSVRNLFAAIDA 533

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYY------LSYQNFAQEINNIIAHNNDDWLSL 598
           RR+I L R +F+LGIRHVG   A+ LA++Y      LS    A +      + ++ +  L
Sbjct: 534 RRSIELHRLVFALGIRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNTSEAYQDL 593

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  +GD++A+A+VEF+   RNI A++ALL E++  +   +    + +  K +VFTG+L
Sbjct: 594 DNIAGIGDVVAEAVVEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKTVVFTGSL 653

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ E+++L L+
Sbjct: 654 SKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTEDEWLALI 713


>gi|192292401|ref|YP_001993006.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1]
 gi|254781404|sp|B3QFL8|DNLJ_RHOPT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|192286150|gb|ACF02531.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1]
          Length = 715

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 306/720 (42%), Positives = 450/720 (62%), Gaps = 27/720 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I  L+  +A+ EL  L  EI  HD  YYQ   P I D++YDAL+RR +AI   FP+L  +
Sbjct: 11  IATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNA 70

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P   +G        KV H++P LSL   +  +++ +F+ R+ RF +  D  +I  
Sbjct: 71  ---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFVERVQRFLRLDDVPAI-- 125

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
             EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L   +IP   E+
Sbjct: 126 VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKHIPAACEL 185

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGEVY+ K DFLALN      G   +ANPRN+A+G LR+ +     +R L FF +  G+ 
Sbjct: 186 RGEVYMLKQDFLALNKRQEEAGETVFANPRNSAAGSLRQKDVLVTASRPLKFFAYAWGEM 245

Query: 247 SE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           S   +    Q++MLQ +   GF VN  +   ++    +++Y  +   R++LPYDIDG+VY
Sbjct: 246 STYPMDEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPYDIDGVVY 305

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG LTPVARL+PV +G
Sbjct: 306 KVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLQPVTVG 365

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++ NATLHNEDYI+G+   G+ +R G DIR GD V+V+RAG+VIP++V +++ +R   
Sbjct: 366 GVVVQNATLHNEDYIRGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVMQKRPAG 425

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P+ FP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFVSR AF+I+
Sbjct: 426 AEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDID 479

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++ F +       ++ PADIFTL+ R      K+E + G+G+ SV NL+ +I+ 
Sbjct: 480 GLGEKQIELFHERG----WVQEPADIFTLKAR--NDQLKLEQLEGYGETSVRNLFAAIDA 533

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYY------LSYQNFAQEINNIIAHNNDDWLSL 598
           RR I L R IF+LGIRHVG   A+ LA++Y      LS    A +      + ++ +  L
Sbjct: 534 RRTIELHRLIFALGIRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNTSEAYQDL 593

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  +GD++A+A+VEF+   RNI A++ALL E++  +   +    + +  K +VFTG+L
Sbjct: 594 DNIAGIGDVVAEAVVEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKTVVFTGSL 653

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ E+++L L+
Sbjct: 654 SKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTEDEWLALI 713


>gi|299131914|ref|ZP_07025109.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2]
 gi|298592051|gb|EFI52251.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2]
          Length = 706

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 312/725 (43%), Positives = 451/725 (62%), Gaps = 33/725 (4%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           K+ + P+E L+  QA+ EL+ L  EIS HD+ YYQ   P + D++YD L++R  AI   F
Sbjct: 6   KKAVTPVENLTKAQAKVELTRLALEISMHDERYYQKDAPTVSDADYDKLRQRLSAIEERF 65

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L   + P+    K+G + + +  K+ H++P LSL   ++ ED+ +F TR+ RF     
Sbjct: 66  PELVAKDSPS---QKVGAQPSRAFAKIRHAVPMLSLGNAFSDEDVAEFATRVRRFLNLGA 122

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNI 181
           D  +    EPKIDG  +++RYE G+ V AA RGDG  GEDV+A +R I  +P  L    +
Sbjct: 123 DEPLVIVAEPKIDGLSLSLRYENGELVSAATRGDGFEGEDVTANVRTIKDVPHTLRGKGV 182

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFV 240
           P I EVRGEVY+ + DFLALN +        +ANPRN+A+G LR+ N     +R L FF 
Sbjct: 183 PAICEVRGEVYMMREDFLALNKKQAEADDTIFANPRNSAAGSLRQKNVEVTASRPLKFFA 242

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           +  G+ SE+ A  Q+EM++ +   GF VN  +        +++YY E+++ R++LPYDID
Sbjct: 243 YAWGEMSEMPAPTQFEMVKWLHKAGFVVNPRMTLCRDVEALLTYYREIETERASLPYDID 302

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKVD    Q +LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG LTPVARL P
Sbjct: 303 GVVYKVDRLDWQNRLGFISRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLTP 362

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG ++ NATLHNED I             +DIR GD V+++RAG+VIP+VV ++  +
Sbjct: 363 VTVGGVVVQNATLHNEDEI-----------ARKDIREGDTVVIQRAGDVIPQVVSVVTEK 411

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  +A+ +SFP  CPIC S  VR+ +       A  RCTG L C AQ +ERLKHFVSR A
Sbjct: 412 RRKNAKSYSFPHKCPICGSHAVREEDE------AVRRCTGALICPAQAVERLKHFVSRLA 465

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +Q+  F+   D    I  P DIFTLQ+R   +  K+++  G+GDVSV NL+ 
Sbjct: 466 FDIEGLGDKQIQEFY---DDGL-IMHPVDIFTLQKRDARAVKKLKDREGYGDVSVNNLFA 521

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDD 594
           +I+ RR I L R IF+LGIRHVG   A+ LA++Y S +N    +           + ++ 
Sbjct: 522 AIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGSIENLRAAMAEAAAAQTEEGNTSEA 581

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
           +  L  +  +GDI+A A+VEF+   RN+ A++ LL E+   +   +    S +  K +VF
Sbjct: 582 YADLNNIGGIGDIVADAVVEFFAEKRNVKALDELLAEIE-VLPAEQVRTDSAVAGKTVVF 640

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L K  R +A+    +LGA VS  +S+KTD ++ G+  GSKL KA++LGV ++ E+++
Sbjct: 641 TGSLTKFTRDEAKAQAERLGAKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDEW 700

Query: 715 LFLLQ 719
           L L++
Sbjct: 701 LKLIE 705


>gi|148257407|ref|YP_001241992.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+))
           [Bradyrhizobium sp. BTAi1]
 gi|166215399|sp|A5EPJ2|DNLJ_BRASB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146409580|gb|ABQ38086.1| DNA ligase (Polydeoxyribonucleotide synthase (NAD+))
           [Bradyrhizobium sp. BTAi1]
          Length = 716

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 307/723 (42%), Positives = 457/723 (63%), Gaps = 16/723 (2%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K ++ + +  L+  QA+ E   L  E+  HD  YYQ   P I D+EYD L+RR +AI   
Sbjct: 6   KPKKPVDVAELTKAQAKVEWKRLALELEVHDRLYYQDDAPKISDAEYDELRRRFNAIETR 65

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L  SE P+    K+G   +    KV H++P LSL+  +  ED+R F+ RI RF +  
Sbjct: 66  FPELVSSESPS---QKVGASPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLKLA 122

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
           DD  I F+ EPKIDG  +++RYE G+ V AA RGDG  GEDV+A IR +  +P+ L   N
Sbjct: 123 DDR-IDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLKDVPQKLHGRN 181

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P++ EVRGEVY++K  FLALN+     G   +ANPRN+A+G LR+ +P    +R L FF
Sbjct: 182 WPDVCEVRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPAITASRPLGFF 241

Query: 240 VHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +  G+ S    A+ Q  M++     GF  N   R  ++   +++++  ++  R+ L YD
Sbjct: 242 AYAWGEISGTPPAETQTGMIKWFEQCGFTTNPLTRLCHSVEELIAFHRSIEEQRAELDYD 301

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q++LG  +R+PRW I+HKF  ++A T L DI+IQ+GRTG LTPV +L
Sbjct: 302 IDGVVYKVDRIDWQERLGFVSRTPRWAIAHKFPAERAMTVLKDIEIQVGRTGSLTPVGKL 361

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GG ++ N TLHNEDYIKG+   G+V+R GRDIR+GD V+++RAG+VIP+VVD+++
Sbjct: 362 EPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVI 421

Query: 419 NERHPDAQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           ++R   A+PF  P  CP    + VVR+    TG+  +  RCTG  AC  Q++E LK F S
Sbjct: 422 DKRPAQARPFHLPKTCPCPLHTDVVRE-ETATGEEGSRARCTGEFACPYQKIEHLKLFAS 480

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R AF+I+GLG++Q+ FFF+       ++ PADIFTLQ+R   +  K+E I G+G+ SV N
Sbjct: 481 RRAFDIDGLGEKQIAFFFEQG----WVKEPADIFTLQKR--NAGLKLEEIEGYGETSVRN 534

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L+++I+ RR I+LERFI++LG+RHVG   A +LA+ Y S+  F +    + A + +    
Sbjct: 535 LFNAIDARREIALERFIYALGMRHVGETTALALARGYGSWDAFHEACLKVAAGDEEAIAE 594

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           +  +  +GD + +++  ++    N   VE L +EV        K   S I  K +VFTGT
Sbjct: 595 MDALDQIGDTVIKSVAAYFAEDHNRGIVERLTQEVKILDAEKPKR-HSPIATKTVVFTGT 653

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+K+ R +A+    +LGA VS  +S+KTD ++ G   GSKL++AQ+ GV+++ E+++L L
Sbjct: 654 LEKMTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKEAQKHGVQVLTEDEWLQL 713

Query: 718 LQQ 720
           + +
Sbjct: 714 IAE 716


>gi|254460861|ref|ZP_05074277.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2083]
 gi|206677450|gb|EDZ41937.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium HTCC2083]
          Length = 706

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 301/713 (42%), Positives = 449/713 (62%), Gaps = 16/713 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I  LS+E+AR EL++L + ++  +  Y+    P + D+ YDALK+R  AI   FP L R 
Sbjct: 6   ITELSVEEARAELAALSKALNTANVAYHGKDNPDLSDANYDALKQRNAAIEDHFPTLVRE 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+     +G  +     K+TH+   +SL   +  ED+  F   I ++    +D  + F
Sbjct: 66  DSPS---KLVGAPVQDGFGKITHAQRMMSLGNAFTDEDVADFTQGIRKYLGLSNDRPLAF 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE G  + AA RGDG +GEDV A    I  +P+ L  N PE+IEVR
Sbjct: 123 TAEPKIDGLSLSLRYENGTLIQAATRGDGTTGEDVLANALTIADVPKNLE-NAPEVIEVR 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246
           GEVY++  DF ALN   +  G K +ANPRNAA+G LR+L+ ++IT  R L FF +  G  
Sbjct: 182 GEVYMTHADFDALNARQVERGSKTFANPRNAAAGSLRQLD-SEITKSRPLRFFAYAWGVL 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S+  A  Q+  + +++ LGF  N   ++      ++ +Y +++  R+ L YDIDG+VYKV
Sbjct: 241 SDPLANTQHGAIARLKMLGFQTNPLTQRFENVVDLIKHYQQIEQQRAALGYDIDGVVYKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ + Q +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG 
Sbjct: 301 DDLAYQSRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLSPVTVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNEDYI+G D SG+++RGGRDIRVGD V + RAG+VIPK+ D+ +++R  D+ 
Sbjct: 361 VVSNATLHNEDYIEGRDNSGELIRGGRDIRVGDWVQIYRAGDVIPKIKDVDLSKRPSDSS 420

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF FP  CP CQS  +RD+        A  RC+GGL C AQ +E++KHFVSR AF+IEGL
Sbjct: 421 PFEFPKICPECQSAALRDVGD------AVRRCSGGLICPAQAVEKMKHFVSRGAFDIEGL 474

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++ F+   DP   IR PADIFTL+ R     +K++N  G+G  S   L+ +I++RR
Sbjct: 475 GAKQVEMFY--HDPTLPIREPADIFTLKTRDAQQLSKLKNRDGWGAKSADKLFAAIDERR 532

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           NIS  R +++LG+RHVGA+ A  +A++Y S+  F   ++       D W  L+ +  VG+
Sbjct: 533 NISFARVLYALGLRHVGAQSASLIARHYGSWAVFVDAMDAASDQVGDAWDRLMSIDGVGE 592

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+A ++V  +  P    ++  +  E++  I   + +  S +  K +VF+GTL+K+ R +A
Sbjct: 593 IMASSLVTAFIQPGERASITRVTDELT-IIDAEKPDTDSPVTGKVVVFSGTLEKMTRAEA 651

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +     LGA VS  +S KTDI+I G   GSK +KA +L ++ ++E+ +L L++
Sbjct: 652 KARAEALGAKVSGSVSAKTDILIAGPGAGSKAKKAAELDIETLDEDSWLALIE 704


>gi|126736446|ref|ZP_01752187.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2]
 gi|126713984|gb|EBA10854.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2]
          Length = 715

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 307/714 (42%), Positives = 439/714 (61%), Gaps = 18/714 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +P+ +LS EQA KELS L  +++  +  Y++   P I D+ YDALKRR  AI   FPDL 
Sbjct: 15  VPVASLSPEQATKELSWLATQLNAANTAYHRDDAPDISDATYDALKRRNAAIEAQFPDLK 74

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R + P+     +GG++     KV H +  LSL   ++ +D+ +F  RI ++     D  +
Sbjct: 75  RQDSPS---ETVGGQIAEGFGKVKHVVRMLSLGNAFDDDDVHEFDQRIRKYLGLAADALL 131

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE GK + AA RGDG +GE+V+   R I  IP  ++   P+++E
Sbjct: 132 TYTAEPKIDGLSLSLRYEDGKLIQAATRGDGETGENVTNNARTIADIPAKVN-GAPDVLE 190

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244
           VRGEVY+S +DF ALN     VG K +ANPRNAA+G LR+L+  +IT  R L FF +  G
Sbjct: 191 VRGEVYMSHDDFTALNARQAEVGGKTFANPRNAAAGSLRQLD-AEITKSRPLRFFAYAWG 249

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             S   A+ Q   + K++ LGF  N      +    ++++Y  +++ R+ L YDIDG+VY
Sbjct: 250 DLSARLAQTQSGAIAKLKTLGFSTNPLTEACDGPAAMIAHYKGIEAQRANLGYDIDGVVY 309

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+ +LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +G
Sbjct: 310 KVDDLTLQRRLGFRSTTPRWAIAHKFPAELAWTVLEAIDIQVGRTGALSPVARLRPVTVG 369

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYI G D +G  +R GRDIRVGD V V RAG+VIPKV DI +  R  D
Sbjct: 370 GVVVSNATLHNEDYIAGRDGNGDPIREGRDIRVGDWVQVYRAGDVIPKVKDIDLARRPKD 429

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A P+  P+ CP C S  +R+         A  RCTGG+ C AQ +E+LKHF+SR AF+IE
Sbjct: 430 AMPYQMPARCPECGSDAIREEGD------AVRRCTGGIICPAQAVEKLKHFISRTAFDIE 483

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +Q++ F+        I  PADIFTL+ R      +++N  G+GD S  NL+D+I++
Sbjct: 484 GLGAKQVEQFYAD----GWIATPADIFTLRVRFSEGLQQLKNREGWGDKSAANLFDAIDE 539

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +R ISL R I+SLGIRHVG   A  LA +Y S+  F Q +          W  L  +  V
Sbjct: 540 KREISLARVIYSLGIRHVGENSAALLANHYTSWTAFEQAMTAAQIGEGHAWDELNNIDGV 599

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++A +++   Q      +++ L+KE+        +   S +  K +VFTGTL+++ R 
Sbjct: 600 GAVMATSLITTMQQEAERASIDQLIKELDVQDA-EARATDSPVAGKTVVFTGTLERMTRA 658

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+     LGA VS  +S KTDI+I G   GSK +KA  LG++ M+E+ +L L+
Sbjct: 659 EAKARAETLGAKVSGSVSAKTDILIAGPGAGSKAKKAADLGIETMDEDAWLSLI 712


>gi|85714986|ref|ZP_01045971.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A]
 gi|85698183|gb|EAQ36055.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A]
          Length = 705

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 306/720 (42%), Positives = 449/720 (62%), Gaps = 33/720 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+++L+  QAR E   L  EI  H++ YYQ   P + D+ YDA++RR +AI   FPDL  
Sbjct: 10  PVDSLTRSQARVEHKRLVLEIEAHNERYYQQDAPTVSDAAYDAMQRRLEAIEARFPDLVT 69

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +   + P   +G        KV H++P LSL   ++  ++ +F+ RI RF +   D+   
Sbjct: 70  A---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDAEVAEFVERIRRFLKLGADDIPA 126

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
              EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L   +IP   E
Sbjct: 127 IVAEPKIDGLSLSLRYEHGELVRAATRGDGFTGEDVTANVRTIRDVPHTLRGRDIPAACE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           +RGEVY+ K DFLALN +  A G   +ANPRN+A+G LR+ +     +R L FF +  G+
Sbjct: 187 LRGEVYMLKEDFLALNKKQEAAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAYAWGE 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            ++  A+ Q++ML+ +R +GF VN  +   ++   ++ +Y  +   R+TL YDIDG+VYK
Sbjct: 247 MTDRPAETQHDMLKWLRDVGFMVNPLIELCSSVEQVLQFYRRIGEQRATLGYDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    Q++LG  +RSPRW I+HKFA +QA T L  IDIQ+GRTG +TPVARLEPV +GG
Sbjct: 307 VDRLDWQERLGFVSRSPRWAIAHKFAAEQAMTILRGIDIQVGRTGAMTPVARLEPVTVGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHNED I             +DI VGD V+V+RAG+VIP+VV +I+ +R  +A
Sbjct: 367 VVVQNATLHNEDEIT-----------RKDIHVGDTVVVQRAGDVIPQVVSVIIGKRPRNA 415

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           QP+ FP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFVSR AF+I+G
Sbjct: 416 QPYVFPHKCPVCGSHAVREEGE------AVRRCTGTLICPAQAVERLKHFVSRLAFDIDG 469

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++Q+  F+   D    I  P DIFTLQ+R   +T K+ +  G+GDVSV NL+ +I+ R
Sbjct: 470 LGEKQIQEFY---DDGL-IMHPVDIFTLQKRDARATKKLRDREGYGDVSVRNLFAAIDAR 525

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------WLSLI 599
           R I L R IF+LGIRHVG   A+ LA++Y   +NF   +        D+      +  L 
Sbjct: 526 RKIELNRLIFALGIRHVGEGNAKLLARHYGGIENFRSAMAEAAGAQTDEGNASEAYADLN 585

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  +G+I+A A+VEF+  PRN+ A+  LL+E+   +   +    S +  K +VFTG+L+
Sbjct: 586 NIGGIGEIVANAVVEFFAEPRNVKALNDLLEEIE-VLPVAQTRSDSAVAGKTVVFTGSLE 644

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           K  R +A+    ++GA VS  +S+KTD+++ G   GSKL+ A++ GV++++E+++L L++
Sbjct: 645 KFTRDEAKASAERMGARVSGSVSKKTDLVVAGPGAGSKLKDAEKFGVRVISEDEWLKLIE 704


>gi|154252874|ref|YP_001413698.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1]
 gi|190359267|sp|A7HVV8|DNLJ_PARL1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154156824|gb|ABS64041.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1]
          Length = 710

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 309/711 (43%), Positives = 452/711 (63%), Gaps = 21/711 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L++E+A +EL  L  EI  HD  YYQ   P I D+EYD L+RR +AI   +P+L R 
Sbjct: 17  VDHLTLEEAPEELERLAAEIEKHDKLYYQKDAPRISDAEYDTLRRRNEAIEARYPELVRE 76

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+   +++G +      KV H +P LSL   ++ ED+R F  RI RF   K+++ +  
Sbjct: 77  DSPS---HRVGAQPADGFGKVVHKVPMLSLSNAFDDEDVRDFALRIRRFLNLKEEDILPI 133

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
           T EPKIDG    +RYEKGKFV  A RGDG  GE+V+  ++ I  IP  L   NIP+++EV
Sbjct: 134 TAEPKIDGLSAALRYEKGKFVMGATRGDGREGENVTENLKTIGDIPAELKGKNIPDVVEV 193

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN+     G+  +ANPRNAA+G LR+L+     +R L FF +  G+ 
Sbjct: 194 RGEVYMSHEDFAALNERQREAGKPVFANPRNAAAGSLRQLDAKITASRPLRFFAYTWGEM 253

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S++ A  Q  ++   R  GF VN    + +T   ++ +Y++++  R+TL YDIDG+VYKV
Sbjct: 254 SDLPADTQSGVMDAFRKWGFTVNPLFGRCDTVEALIDFYHDIEERRATLGYDIDGVVYKV 313

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q +LG  +RSPRW ++HKF  +QA T L  I+IQ+GRTG LTPVARL PV +GG 
Sbjct: 314 DRLDWQNRLGFVSRSPRWALAHKFPAEQAMTVLEKIEIQVGRTGALTPVARLTPVTVGGV 373

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHN D I+ L            +R GD V+V+RAG+VIP++V + V +R    +
Sbjct: 374 VVSNATLHNADEIERLG-----------VRPGDTVVVQRAGDVIPQIVRV-VEDRPRGKK 421

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F FP  CP C S  VR++NPKTGKL A  RCTGGL C AQ +ERL+HFVSR+AF+IEGL
Sbjct: 422 KFVFPDTCPECGSHAVREVNPKTGKLDAVARCTGGLVCPAQAVERLRHFVSRNAFDIEGL 481

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++Q+  FF  ED    I+ P DIFTL  R   S  K+++  G+G  S   L+D+I+ RR
Sbjct: 482 GEKQIAAFF--EDGL--IKKPDDIFTLAARDAKSLKKLKDREGWGATSARKLFDAIDARR 537

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            + L+RFIF LGIRHVG   AR LA+ Y +  +F +++       ++ +  L+ +  VG+
Sbjct: 538 EVELDRFIFGLGIRHVGETNARLLARSYGTLDHFEEQMRAAADREDEAYAELLSIDGVGE 597

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A++IV+F+    N   ++ L +     +   ++  SS +  K +VFTG+L+K+ R +A
Sbjct: 598 VLAESIVDFFAEKHNREVLDGLREAGVKGVPLPKQETSSPVAGKTVVFTGSLEKMTRSEA 657

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +    QLGA V+  +S KTDI++ G + GSKL KA++LG++I++E+Q++ L
Sbjct: 658 KARAEQLGAKVAGSVSAKTDILVAGADAGSKLAKARELGIEILDEDQWIEL 708


>gi|126462048|ref|YP_001043162.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029]
 gi|166216229|sp|A3PJ74|DNLJ_RHOS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126103712|gb|ABN76390.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029]
          Length = 704

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 303/712 (42%), Positives = 437/712 (61%), Gaps = 17/712 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L+  +A  EL+ L + I   +  Y+ +  P I D++YDALK R  AI   FP+L R
Sbjct: 6   PVDQLTEAEAATELARLAEAIEAANTAYHTHDAPQISDADYDALKLRNRAIEEQFPELRR 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S+ P+   +++GG +     KV H +  LSLE  +++ ++  +I RI R+     D  + 
Sbjct: 66  SDSPS---DRVGGALAEGFAKVRHEVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYEKG+ V AA RGDG +GE+V+   R I  +P  L    P+++EV
Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELD-GAPDLLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    A G++ +ANPRNAA+G LR+L+P    +R L FF +  G  
Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q+E + ++  LGF  N   R       +++ + E++  R+ L YDIDG+VYKV
Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ++LG RA +PRW I+HKFA + A T+L  IDIQ+GRTG L+PVARL+PV +GG 
Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R   A 
Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP C S  +R+            RCTGGL C AQQ+ERLKHFVSR AF+IEGL
Sbjct: 420 RYRFPETCPECGSEAIREPGDSV------RRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++  ++       IR PADIF L  R +    ++EN  G+G  S  NL+ +I  RR
Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L R IF+LGIRHVG   A  LA +Y S+  F   +         +W  L+ +  VG 
Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A ++V  +       AV+AL   ++         V+S +  K +VFTGTL+K+ R +A
Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGKIVVFTGTLEKMSRAEA 649

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA VS  +S +TD+++ G   GSK ++A  LG++ ++E+ +L L+
Sbjct: 650 KARAEALGAKVSGSVSARTDVVVAGPGAGSKAKQAAALGIETIDEDGWLRLI 701


>gi|149915267|ref|ZP_01903795.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b]
 gi|149810988|gb|EDM70827.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b]
          Length = 720

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 304/714 (42%), Positives = 441/714 (61%), Gaps = 16/714 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ LS +QA +EL+ L   ++  D  Y+    PI+ D+ YDAL +R  AI   FPDL R
Sbjct: 17  PVDKLSADQAAQELARLADLVAQADAAYHGQDAPIMSDAAYDALVQRNAAIEARFPDLMR 76

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            + P+    ++G   +    KVTH++  LSL   +  +++R+F  RI R+     + ++ 
Sbjct: 77  EDSPS---RRVGFTPSEGFGKVTHAVRMLSLGNAFEDDEIREFDARIRRYLGLSPEAALT 133

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIE 186
           +T EPKIDG  +++RYE+G+ V AA RGDG  GE+V+A  R I  IP  L    +PE++E
Sbjct: 134 YTSEPKIDGLSLSLRYEQGRLVQAATRGDGAEGENVTANARTIADIPHDLGGAGVPELLE 193

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           VRGEVY+S  DF ALN        K +ANPRNAA+G LR+L+P    R  L FF +  G 
Sbjct: 194 VRGEVYMSHADFEALNTRQTERSDKTFANPRNAAAGSLRQLDPKITARRPLKFFAYAWGA 253

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE  A  Q E + ++   GF  N      +    +++ Y  ++ +R+ L YDIDG+VYK
Sbjct: 254 HSEPLAPSQMEAIARLAGFGFQTNPLTALCDGPDEMLAQYRRIEQLRAELGYDIDGVVYK 313

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+E +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 314 VNEIALQHRLGYRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLHPVTVGG 373

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI G DA G  +RGG+DIRVGD V V RAG+VIPKV D+ +++R  D+
Sbjct: 374 VVVSNATLHNEDYIAGRDAKGNKIRGGKDIRVGDWVQVYRAGDVIPKVADVDLSKRPEDS 433

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P++FP  CP C S  +R+         A  RCTGGL C AQ +E+LKHFVSR AF+IEG
Sbjct: 434 APYTFPKVCPECGSDAIREEGD------AVRRCTGGLICPAQAVEKLKHFVSRAAFDIEG 487

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSINK 544
           LG +Q++ F         IR PADIFTL+ R      T+++N  G+G+ S  NL+D+I++
Sbjct: 488 LGAKQVEQFHADG----WIREPADIFTLKDRYGPGCLTQLKNRDGWGEKSAANLFDAIDE 543

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RR I+L R +F+LGIRHVG   +  LA++Y ++  F   ++   A    DW  L+ +  V
Sbjct: 544 RRRIALGRLLFALGIRHVGEAASMMLARFYGTWDEFTAAMDGAAAGEGPDWDRLLGIDGV 603

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++AQ++V  +       +++ L+  +            S +  K +VFTGTL+K+ R 
Sbjct: 604 GKVMAQSLVTTFAQDEERASIDRLVAHLEIERAERPDTDGSPVAGKTVVFTGTLEKMTRA 663

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+     LGA VS  +S KTD++I G   GSK + A+QLGV++++E+ +L L+
Sbjct: 664 EAKARAEALGAKVSGSVSAKTDLVIAGPGAGSKAKAAEQLGVEMIDEDGWLALI 717


>gi|110679832|ref|YP_682839.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114]
 gi|123172419|sp|Q166E0|DNLJ_ROSDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|109455948|gb|ABG32153.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114]
          Length = 705

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 298/713 (41%), Positives = 440/713 (61%), Gaps = 15/713 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+++L+ + A+KELS L   +   +  Y+    PII D+++DA KRR  AI   FP L R
Sbjct: 5   PLDSLTEKAAKKELSKLADLLDQANTAYHANDAPIISDADFDAYKRRNLAIEERFPHLKR 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           ++ P    +++G   +    KV HSI  LSL   ++  D+  F+ RI +     D  ++ 
Sbjct: 65  ADSPT---DRVGAAPSAGFSKVVHSIAMLSLANAFDEADVSDFVQRIRKHLGLSDIEALS 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYE G  V AA RGDG  GE+V+   R IP IP  +S N P+++EV
Sbjct: 122 FTSEPKIDGLSLSLRYENGTLVQAATRGDGAIGENVTENARTIPDIPEQIS-NAPDVLEV 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    + G K +ANPRNAA+G LR+L+     +R L FF +  G  
Sbjct: 181 RGEVYMSHADFEALNARQASAGAKLFANPRNAAAGSLRQLDARITQSRPLRFFAYAWGTL 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE   K Q + +++++  GF  N+   + N    +++ Y  ++  R++L YDIDG+VYKV
Sbjct: 241 SEPLGKTQMQSIERLQSFGFQTNDLTEKCNGPEELLAQYRRIEERRASLDYDIDGVVYKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+  LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL+PV +GG 
Sbjct: 301 DDLDLQRRLGFRSTTPRWAIAHKFPAELAWTELQGIDIQVGRTGALSPVARLKPVTVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNEDYI G D  G V+RGG+DIRVGD V V RAG+VIPKV D+ + +R  DA 
Sbjct: 361 VVSNATLHNEDYIAGRDNKGDVIRGGKDIRVGDFVQVYRAGDVIPKVADVDLKKRPADAI 420

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP+ CP C S  +R+         A  RCTGGL C AQ +ERLKHFVSR AF+I+GL
Sbjct: 421 PYVFPATCPECGSDALREAGD------AVRRCTGGLICPAQAVERLKHFVSRAAFDIDGL 474

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++ F+K       I  PADIFTL+ R  +   +++N  G+G+ S  NL+D+I+ +R
Sbjct: 475 GAKQIEQFYKDG----WISEPADIFTLRDRFGSGIQQLKNRDGWGEKSANNLFDAIDDKR 530

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I L R IF+LGIRHVG   +  +A++Y ++  F + +      + + W  L+ +  VG 
Sbjct: 531 QIPLARLIFALGIRHVGEAASNLIAQHYSTFDAFEKSMLAAQDKDGEAWDDLLSIDGVGT 590

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++AQ+++          +++ L+ ++            S +  K +VFTGTL K+ R +A
Sbjct: 591 VMAQSVIHAMGQAAERASIDRLVAQLDVQPSEAVVTDGSPVAGKTVVFTGTLSKMTRAEA 650

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +     LGA V+  +S KTD ++ G   GSK +KA +LGV+ ++E+ +L L++
Sbjct: 651 KSRAESLGARVAGSVSAKTDFLVAGPGAGSKAKKAAELGVQTLDEDGWLALIE 703


>gi|254488738|ref|ZP_05101943.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101]
 gi|214045607|gb|EEB86245.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101]
          Length = 706

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 305/714 (42%), Positives = 442/714 (61%), Gaps = 17/714 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I ++ LS +QA +EL  L   ++  +  YY    P I D+EYD LKRR   I   FP L 
Sbjct: 5   IAVQDLSKDQAAEELRRLSGLLAQANRQYYAEDAPQISDAEYDCLKRRNTEIETRFPSLK 64

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R++ P     +IG   +    KV H +P LSL   +  ED+ +F  RI ++     D  +
Sbjct: 65  RADSPT---EQIGATPSEGFSKVRHEVPMLSLGNAFEDEDVVEFDGRIRKYLGLPSDADL 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G  V AA RGDG  GE+V+A  R I TIP+ L  + P++IE
Sbjct: 122 DFTAEPKIDGLSLSLRYENGLLVQAATRGDGAVGENVTANARTIQTIPKKLD-SAPDVIE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLG 244
           +RGEVY+S +DF ALN      G K +ANPRNAA+G LR+L+  +ITR   L FF +  G
Sbjct: 181 IRGEVYMSHDDFDALNARQGERGGKLFANPRNAAAGSLRQLD-AEITRSRPLKFFAYAWG 239

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             SE   + Q E +++M  +GF  N      ++   ++  Y ++++ R+TL YDIDG+VY
Sbjct: 240 ALSEPLGQTQSEAIKRMENMGFCTNPLTELCSSVAEMIDQYRKIEAQRATLGYDIDGVVY 299

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ +LQ++LG R+ +PRW I+HKF  + A T L DI IQ+GRTG L+PVARL+PV +G
Sbjct: 300 KVNDLALQERLGFRSTTPRWAIAHKFPAELAWTTLEDITIQVGRTGALSPVARLKPVTVG 359

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYIKG+D+ G  +R G+DIRVGD V V RAG+VIPK+ D+ ++ R  D
Sbjct: 360 GVVVSNATLHNEDYIKGVDSKGNQIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSRRPSD 419

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           + PF FP+ CP C S  +R+         A  RC GGL C AQ +E+LKHFVSR AF+I+
Sbjct: 420 SVPFDFPTICPECGSDAIREEGD------AVRRCMGGLVCPAQAVEKLKHFVSRAAFDID 473

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +Q++ F+        I  PADIFTLQ R  +   +++N  G+G+ S T L+ +I+ 
Sbjct: 474 GLGAKQVEQFYTDG----WIAEPADIFTLQARYGSGVQQLKNREGWGEKSATKLFQAIDD 529

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +R I L R IF+LGIRHVG   +  +A +Y ++  F   + N    +   W  LI V  V
Sbjct: 530 KRTIPLARLIFALGIRHVGEAASNLIALHYGTWSAFITAMENAREASGPAWDDLISVDGV 589

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++AQ++V  +       +++ L+ E+S           S ++ K +VFTGTL+K+ R 
Sbjct: 590 GQVMAQSLVSTFAQEAERASIDRLVAELSIQDATRPDTQGSPVDGKTVVFTGTLEKMTRA 649

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+    +LGA VS  +S KTDI++ G   GSK +KA +LG++I++E+ +L L+
Sbjct: 650 EAKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAAELGIEILDEDAWLDLI 703


>gi|91977847|ref|YP_570506.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5]
 gi|123735250|sp|Q133Y4|DNLJ_RHOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91684303|gb|ABE40605.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5]
          Length = 714

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 307/720 (42%), Positives = 449/720 (62%), Gaps = 28/720 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A+ EL  L   I  HD  YYQ   P I D++YDAL+RR +AI   FP+L  +
Sbjct: 12  IDKLTKPKAKVELMRLRLAIEGHDKAYYQDDAPKIPDADYDALRRRLEAIEAKFPELLSA 71

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+     +G        KV H++P LSL   ++ +++ +F+ R+ RF + +D  +I  
Sbjct: 72  SSPS---QTVGAAPARGFSKVQHAVPMLSLGNAFSDDEVGEFVERVQRFLKLEDIPAI-- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
             EPKIDG  +++RYE G  V AA RGDG +GEDV+A +R I  IP  L +  IP   E+
Sbjct: 127 VAEPKIDGLSLSLRYENGTLVRAATRGDGFTGEDVTANVRTIADIPTTLKAKTIPAACEL 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEVY+ K+DFLALN      G   +ANPRN+A+G LR+ +     +R L FF +  G+ 
Sbjct: 187 RGEVYMLKHDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAYAWGEM 246

Query: 247 SE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           S+  + +  Q+ ML  +   GF VN  +   ++    +++Y  +   R+ LPYDIDG+VY
Sbjct: 247 SDYPMESPTQHAMLAWLGDAGFTVNPEITLCHSVDDALAFYRRIGEQRAALPYDIDGVVY 306

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q +LG  +RSPRW I+HKFA +QA T L  IDIQ+GRTG LTPVARL+PV +G
Sbjct: 307 KVDRLDYQARLGFVSRSPRWAIAHKFAAEQAVTVLEKIDIQVGRTGALTPVARLQPVTVG 366

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++ NATLHNEDYIKG+ + G  +R G DIR GD V+V+RAG+VIP++V +++++R  D
Sbjct: 367 GVVVQNATLHNEDYIKGVGSDGSPLRDGVDIREGDTVVVQRAGDVIPQIVTVVLDKRPAD 426

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              + FP  CP+C S   R+         A  RCTG L C AQ +ERLKHFVSR AF+I+
Sbjct: 427 LPAYKFPHKCPVCGSHAAREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDID 480

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q+  F +       +R PADIFTL+ R   +  K+E++ G+G+ SV NL+ +I+ 
Sbjct: 481 GLGEKQIVLFHERG----WVREPADIFTLKARN--AELKLEDLEGYGETSVRNLFAAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------AQEINNIIAHNNDDWLSL 598
           RRNI L R IF+LGIRHVG   A+ LA++Y S   F      A E      + ++ +  L
Sbjct: 535 RRNIELNRLIFALGIRHVGEGNAKLLARHYGSIDVFLAAMRAAAEGQTPEGNTSEAYQDL 594

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  +GD++A+A+VEF+  PRN+ A++ALL+E+   +   +    + +  K +VFTG L
Sbjct: 595 DNIAGIGDVVAEAVVEFFAEPRNVGALDALLREIE-VLPVEQAKQDTAVAGKTVVFTGAL 653

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ E+++L L+
Sbjct: 654 TKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKARDLGVAVLTEDEWLALI 713


>gi|39936579|ref|NP_948855.1| DNA ligase [Rhodopseudomonas palustris CGA009]
 gi|39650435|emb|CAE28958.1| DNA ligase [Rhodopseudomonas palustris CGA009]
          Length = 692

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 300/705 (42%), Positives = 444/705 (62%), Gaps = 27/705 (3%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  EI  HD  YYQ   P I D++YDAL+RR +AI   FP+L  +   + P   +G    
Sbjct: 3   LRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNA---SSPTQTVGAAPA 59

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               KV H++P LSL   +  +++ +F  R+ RF +  D  +I    EPKIDG  +++RY
Sbjct: 60  RGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLDDVPAI--VAEPKIDGLSLSLRY 117

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALN 202
           E G+ V AA RGDG +GEDV+A +R I  +P  L   +IP   E+RGEVY+ K DFLALN
Sbjct: 118 ENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKHIPATCELRGEVYMLKQDFLALN 177

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE--IFAKGQYEMLQ 259
                     +ANPRN+A+G LR+ + T   +R L FF +  G+ S+  +    Q++MLQ
Sbjct: 178 KRQEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFFAYAWGEMSDYPMEEPTQHKMLQ 237

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +   GF VN  +   ++    +++Y  +   R++LPYDIDG+VYKVD    Q++LG  +
Sbjct: 238 WLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPYDIDGVVYKVDRLDYQERLGFVS 297

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           RSPRW I+HKFA +QA+T L  IDIQ+GRTG +TPVARL+PV +GG ++ NATLHNEDYI
Sbjct: 298 RSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVARLQPVTVGGVVVQNATLHNEDYI 357

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           KG+   G+ +R G DIR GD V+V+RAG+VIP++V +++ +R   A+P+ FP  CP+C S
Sbjct: 358 KGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVMEKRPAGAEPYHFPHKCPVCGS 417

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
             VR+         A  RCTG L C AQ +ERLKHFVSR AF+I+GLG++Q++ F +   
Sbjct: 418 HAVREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDIDGLGEKQIELFHERG- 470

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               ++ PADIFTL+ R   +  K+E + G+G+ SV NL+ +I+ RR+I L R +F+LGI
Sbjct: 471 ---WVQEPADIFTLKAR--NAELKLEQLEGYGETSVRNLFAAIDARRSIELHRLVFALGI 525

Query: 560 RHVGAEIARSLAKYY------LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           RHVG   A+ LA++Y      LS    A +      + ++ +  L  +  +GD++A+A+V
Sbjct: 526 RHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNTSEAYQDLDNIAGIGDVVAEAVV 585

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           EF+   RNI A++ALL E++  +   +    + +  K +VFTG+L K  R +A+    +L
Sbjct: 586 EFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKTVVFTGSLSKFTRDEAKAAAERL 645

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           GA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ E+++L L+
Sbjct: 646 GAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTEDEWLALI 690


>gi|146342488|ref|YP_001207536.1| DNA ligase [Bradyrhizobium sp. ORS278]
 gi|166215400|sp|A4YZJ3|DNLJ_BRASO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146195294|emb|CAL79319.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
           [Bradyrhizobium sp. ORS278]
          Length = 716

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/722 (41%), Positives = 456/722 (63%), Gaps = 14/722 (1%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +Q + +  L+  QA+ E   L  E+  HD  YYQ   P I D+ YD L+RR +AI   
Sbjct: 6   KSKQSVDVADLTKAQAKVEWKRLALELETHDRLYYQEDAPKISDAAYDELRRRFNAIEKR 65

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L   + P+     +G   +    KV H++P LSL+  +  ED+R F+ RI RF +  
Sbjct: 66  FPELVSRDSPS---QTVGAAPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLKLA 122

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
           +D+ I F+ EPKIDG  +++RYE G+ V AA RGDG  GEDV+A IR +  +P+ L   N
Sbjct: 123 EDDRIAFSAEPKIDGLSMSLRYEGGQLVTAATRGDGAEGEDVTANIRTLKDVPQKLHGRN 182

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P+I E+RGEVY++K  FLALN+     G   +ANPRN+A+G LR+ +PT   +R L FF
Sbjct: 183 LPDICEIRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPTITASRPLGFF 242

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G  S + A+ Q  M++     GF  N   +  ++   +++++  ++  R+ L YDI
Sbjct: 243 AYAWGDMSAMPAETQSGMIKWFEHCGFTTNPLTKLCHSVEELIAFHRAIEEQRAELDYDI 302

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +R+PRW I+HKF  ++A T L DI+IQ+GRTG  TPV +LE
Sbjct: 303 DGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLKDIEIQVGRTGSFTPVGKLE 362

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ N TLHNEDYIKG+   G+V+R GRDIR+GD V+++RAG+VIP+VVD++++
Sbjct: 363 PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVLID 422

Query: 420 ERHPDAQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           +R  DA+ F+FP  CP    + VVR+     G+  +  RCTG  AC  Q++E LK F SR
Sbjct: 423 KRPADAEVFAFPRKCPCPLHTDVVRE-ETAAGEEGSRARCTGEFACPYQKIEHLKLFASR 481

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            AF+I+GLG++Q+ FFF   D  + ++ PADIFTLQ+R   +  K+E + G+G+ SV NL
Sbjct: 482 RAFDIDGLGEKQIQFFF---DEGW-VKEPADIFTLQKR--NAKLKLEEVEGYGETSVRNL 535

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +++I  RR ++LERFI++LG+R+VG   A +LA+ Y S++ F      +   + +    +
Sbjct: 536 FNAIEARREMALERFIYALGMRYVGETTALALARGYGSWEAFHDACLKVANGDEEAIAEM 595

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  +G+ + +++  ++    N   VE L +EV        K  +S I  K +VFTGTL
Sbjct: 596 DALDQIGETVIKSVAAYFGEDHNRGIVERLTREVKILDAEKPKR-NSPIATKTVVFTGTL 654

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R +A+    +LGA VS  +S+KTD ++ G   GSKL+ A++ GVK++ E+++L L+
Sbjct: 655 EKMTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVKVLTEDEWLQLI 714

Query: 719 QQ 720
            +
Sbjct: 715 GE 716


>gi|146277206|ref|YP_001167365.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025]
 gi|166216230|sp|A4WRP6|DNLJ_RHOS5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145555447|gb|ABP70060.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025]
          Length = 704

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 297/685 (43%), Positives = 424/685 (61%), Gaps = 17/685 (2%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+ +  P I D++YDALKRR  AI   FP L RS+ P+    ++GG +     KV H + 
Sbjct: 33  YHTHDAPRISDADYDALKRRNRAIEERFPALRRSDSPS---ERVGGALAEGFAKVRHEVR 89

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSLE  + + ++ ++I RI RF     D  + FT EPKIDG  +++RYEKG+ V AA R
Sbjct: 90  MLSLENAFELAEVEEWIERIRRFLGHVGD--LRFTAEPKIDGLSLSLRYEKGRLVQAATR 147

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG +GE+V+   R I  +P  L+   P+++EVRGEVY+   DF ALN+   A G++ +A
Sbjct: 148 GDGETGENVTENARTIGDLPTELT-GAPDLLEVRGEVYMRHADFAALNERQEATGQRLFA 206

Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+P    +R L+FF +  G  SE  A  Q   + ++  LGF  N   R
Sbjct: 207 NPRNAAAGSLRQLDPAVTASRPLHFFAYAWGAHSEPLADTQQGAIARLSALGFATNPLTR 266

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
                  ++++Y +++  R++L YDIDG+VYKVD+ +LQ++LG RA +PRW I+HKFA +
Sbjct: 267 LCTGPDELLAHYADIERQRASLGYDIDGVVYKVDDLALQRRLGFRASTPRWAIAHKFAAE 326

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
            A T+L  IDIQ+GRTG L+PVARL+PV +GG ++ NATLHNEDYI G D+ G+ +RGG+
Sbjct: 327 LAWTQLEGIDIQVGRTGALSPVARLKPVTVGGVVVANATLHNEDYIAGRDSKGQEIRGGK 386

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIRVGD V V RAG+VIPKV ++ ++ R   A+P+ FP  CP C S  +R+         
Sbjct: 387 DIRVGDWVQVYRAGDVIPKVAEVDLSRRPEGAEPYRFPDTCPDCGSAAIREPGDSV---- 442

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
              RCTGGL C AQQ+ERLKHFVSR AF+IEGLG +Q++  ++       IR PADIF L
Sbjct: 443 --RRCTGGLICPAQQVERLKHFVSRAAFDIEGLGARQVEALWRD----GWIRQPADIFEL 496

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
             R +    ++EN  G+G  S  NL  +I  RR I+L R IF+LGIRHVG   A  LA +
Sbjct: 497 PNRYRDGLQRLENREGWGRKSAENLLAAIEARRRIALHRLIFALGIRHVGETTATLLATH 556

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           Y S+  F   +         +W  L+ +  VG ++A ++V  +       A++AL   ++
Sbjct: 557 YGSWAAFEAAMTRAEVGTGSEWQDLLSIDGVGAVLATSLVTTFHQEAERAAIDALAAHLT 616

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                    V S I  K +VFTGTL+K+ R++A+     LGA VS  +S +TD+++ G  
Sbjct: 617 VEDAEMRAPVESPIAGKIVVFTGTLEKMSRNEAKARAEALGAKVSGSVSARTDLVVAGPG 676

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLL 718
            GSK ++A  LGV+ + E+ +L L+
Sbjct: 677 AGSKAKQAAALGVETIGEDAWLRLI 701


>gi|260462100|ref|ZP_05810344.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075]
 gi|259031960|gb|EEW33227.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075]
          Length = 734

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 303/732 (41%), Positives = 441/732 (60%), Gaps = 32/732 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+++LS  +A  EL  L +EI+ HD  Y+    P I D+EYDAL+RR  AI   FP L R
Sbjct: 5   PVDSLSESEAEAELQRLAEEIAEHDRRYHTEDAPTITDAEYDALRRRNLAIEERFPGLVR 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            + P+    ++G        KV H++P LSL K +  ED+  FI R  RF+ +  D  I 
Sbjct: 65  EDSPS---LRVGAAPAEGFAKVRHAVPMLSLAKAYTDEDVTDFIERGRRFFDRDKDLDIA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           FT EPKIDG   ++RYEKG FV  A RG+G  GED++A +R I  IP  L     PEIIE
Sbjct: 122 FTAEPKIDGLSASLRYEKGVFVQGATRGNGTVGEDITANLRTIADIPAKLKGSGWPEIIE 181

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           +RGEVY++  +F AL     A G + Y NPRN A+G LR+ + +   +R L FF +  G 
Sbjct: 182 IRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKFFAYAWGY 241

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           T+E  A  QY  +QK    GF ++  + +A +   +V++Y+ ++  RS+L YDIDG+VYK
Sbjct: 242 TTEDPAPTQYGAVQKFADWGFKISPLMVRAKSVEELVAHYHRIEEQRSSLGYDIDGVVYK 301

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+  LQ++ G     PRW I+HKF  +QA T +  IDIQ+GRTG L PVARL PV +GG
Sbjct: 302 VDQLELQRRWGFVTGEPRWAIAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVGG 361

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ N TLHNEDYIKG D++G+ +R G D+R+GD V+++RAG+VIP++V +++++R  DA
Sbjct: 362 VVVENVTLHNEDYIKGFDSNGQPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPADA 421

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP  CP+C S   R++N KTGK  +  RCTG L C+AQ +ERL+HFVSR A +IEG
Sbjct: 422 TPYEFPHTCPVCGSPATREINEKTGKEDSRRRCTGELICAAQAVERLRHFVSRGALDIEG 481

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI-------------------EN 526
           LG + +D FF     A  I+  ADIFTL+ R+   T  +                   +N
Sbjct: 482 LGAENIDTFFN----AGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAASGKTRKN 537

Query: 527 ILGFGD---VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
           +    D     +  L+ +I+ RR   L+RFIF+LGIRH+G   A  LA+ + + +   + 
Sbjct: 538 VRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAALLARTFSTIEELIR- 596

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           +    A   D       +  +GD +  A+ +F+ N RN   +E LL++V P       + 
Sbjct: 597 VGKETAAAEDPHTVFPSINGIGDTVIDALRDFFGNQRNDDVLEKLLEQVKPKPYIVTVSA 656

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
            SE+  K +VFTGTL+K+ R +A+    +LGA V+  +S KTD+++ G   GSKL+ A +
Sbjct: 657 DSEVAGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGSKLKLASE 716

Query: 704 LGVKIMNEEQFL 715
           LGV++++E+ +L
Sbjct: 717 LGVEVIDEDTWL 728


>gi|221639033|ref|YP_002525295.1| DNA ligase [Rhodobacter sphaeroides KD131]
 gi|254781405|sp|B9KRK2|DNLJ_RHOSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221159814|gb|ACM00794.1| DNA ligase [Rhodobacter sphaeroides KD131]
          Length = 704

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 302/712 (42%), Positives = 438/712 (61%), Gaps = 17/712 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L+  +A  EL+ L + I   +  Y+ +  P I D++YDAL+ R  AI   FP+L R
Sbjct: 6   PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALRLRNRAIEEQFPELRR 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S+ P+   +++GG +     KV H +  LSLE  +++ ++  +I RI R+     D  + 
Sbjct: 66  SDSPS---DRVGGALAEGFAKVRHEVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYEKG+ V AA RGDG +GE+V+   R I  +P  L    P+++EV
Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELD-GAPDLLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    A G++ +ANPRNAA+G LR+L+P    +R L FF +  G  
Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q+E + ++  LGF  N   R       +++ + E++  R+ L YDIDG+VYKV
Sbjct: 240 SEPLAATQHEAIARLAALGFTTNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ++LG RA +PRW I+HKFA + A T+L  ID+Q+GRTG L+PVARL+PV +GG 
Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDVQVGRTGALSPVARLKPVTVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R   A 
Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C S  +R+            RCTGGL C AQQ+ERLKHFVSR AF+IEGL
Sbjct: 420 PYRFPETCPECGSEAIREPGDSV------RRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++  ++       IR PADIF L  R +    ++EN  G+G  S  NL+ +I  RR
Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L R IF+LGIRHVG   A  LA +Y S+  F   +         +W  L+ +  VG 
Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A ++V  +       AVEAL   ++         V+S +  + +VFTGTL+K+ R +A
Sbjct: 590 VLATSLVTAFHQEAERAAVEALAAHLTVEDAEVRAPVASPVAGRIVVFTGTLEKMSRAEA 649

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA VS  +S +TD+++ G   GSK ++A  LG++ ++E+ +L L+
Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLI 701


>gi|77463176|ref|YP_352680.1| DNA ligase [Rhodobacter sphaeroides 2.4.1]
 gi|123730578|sp|Q3J355|DNLJ_RHOS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77387594|gb|ABA78779.1| DNA ligase [Rhodobacter sphaeroides 2.4.1]
          Length = 704

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 303/712 (42%), Positives = 438/712 (61%), Gaps = 17/712 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L+  +A  EL+ L + I   +  Y+ +  P I D++YDALK R  AI   FP+L R
Sbjct: 6   PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALKVRNRAIEEQFPELRR 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S+ P+   +++GG +     KV H +  LSLE  +++ ++  +I RI R+     D  + 
Sbjct: 66  SDSPS---DRVGGALAEGFAKVRHDVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYEKG+ V AA RGDG +GE+V+   R I  +P  L    P+++EV
Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELD-GAPDLLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    A G++ +ANPRNAA+G LR+L+P    +R L FF +  G  
Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q+E + ++  LGF  N   R       +++ + +++  R+ L YDIDG+VYKV
Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAQIERQRAALGYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ++LG RA +PRW I+HKFA + A T+L  IDIQ+GRTG L+PVARL+PV +GG 
Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R   A 
Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C S  +R+            RCTGGL C AQQ+ERLKHFVSR AF+IEGL
Sbjct: 420 PYRFPETCPECGSEAIREPGDSV------RRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++  ++       IR PADIF L  R +    ++EN  G+G  S  NL+ +I  RR
Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYRDGMQRLENREGWGRKSAENLFAAIEARR 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L R IF+LGIRHVG   A  LA +Y S+  F   +         +W  L+ +  VG 
Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A ++V  +       AV+AL   ++         V+S +  K +VFTGTL+K+ R +A
Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGKIVVFTGTLEKMSRAEA 649

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA VS  +S +TD+++ G   GSK ++A  LG++ ++E+ +L L+
Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLI 701


>gi|332558050|ref|ZP_08412372.1| DNA ligase [Rhodobacter sphaeroides WS8N]
 gi|332275762|gb|EGJ21077.1| DNA ligase [Rhodobacter sphaeroides WS8N]
          Length = 704

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 303/712 (42%), Positives = 438/712 (61%), Gaps = 17/712 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L+  +A  EL+ L + I   +  Y+ +  P I D++YDALK R  AI   FP+L R
Sbjct: 6   PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALKLRNRAIEEQFPELRR 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S+ P+   +++GG +     KV H +  LSLE  +++ ++  +I RI R+     D  + 
Sbjct: 66  SDSPS---DRVGGALAEGFAKVRHDVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYEKG  V AA RGDG +GE+V+   R I  +P  L  + P+++EV
Sbjct: 121 FTAEPKIDGLSLSLRYEKGHLVQAATRGDGETGENVTENARTIADLPTELD-SAPDLLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    A G++ +ANPRNAA+G LR+L+P    +R L FF +  G  
Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q+E + ++  LGF  N   R       +++ + E++  R+ L YDIDG+VYKV
Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ++LG RA +PRW I+HKFA + A T+L  IDIQ+GRTG L+PVARL+PV +GG 
Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R   A 
Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C S  +R+            RCTGGL C AQQ+ERLKHFVSR AF+IEGL
Sbjct: 420 PYRFPETCPECGSEAIREPGDSV------RRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++  ++       IR PADIF L  R +    ++EN  G+G  S  NL+ +I  RR
Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L R IF+LGIRHVG   A  LA +Y S+  F   +         +W  L+ +  VG 
Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A ++V  +       AV+AL   ++         V+S +  + +VFTGTL+K+ R +A
Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGRIVVFTGTLEKMSRAEA 649

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA VS  +S +TD+++ G   GSK ++A  LG++ ++E+ +L L+
Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLI 701


>gi|209963935|ref|YP_002296850.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW]
 gi|254781401|sp|B6IRF1|DNLJ_RHOCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|209957401|gb|ACI98037.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW]
          Length = 719

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 304/731 (41%), Positives = 435/731 (59%), Gaps = 42/731 (5%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP+E L+++QA  E ++L +EI++H   YY    P I DS YDAL+ R   +   FP+L 
Sbjct: 10  IPVETLTLDQAAAEHAALVREIAHHRALYYGKDAPEIADSAYDALEHRLAGLEARFPELV 69

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P   +G   +    KV H +P LSL+  +  ED+  F+ +I RF   K+ + +
Sbjct: 70  ---TPDSPTQTVGAAPSAGFGKVRHRVPMLSLDNAFTAEDVDGFVEQIARFLNLKEVDGL 126

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            F  EPKIDG  +++RYE G    AA RGDG  GEDV+A +R I  IP  L    P ++E
Sbjct: 127 EFVAEPKIDGLSLSLRYENGALAQAATRGDGAEGEDVTANVRTIREIPDRLPAGAPSVLE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+ + +F ALN      G K +ANPRNAA+G LR+L+P+    R L FF +  G 
Sbjct: 187 VRGEVYMVREEFFALNRRQAEAGEKVFANPRNAAAGSLRQLDPSVTAKRPLCFFAYSWGD 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE     Q+E LQ+++ LGF V    R   +   ++ YY  + + R+ LP+DIDG+VYK
Sbjct: 247 LSEPLGATQWEALQRLKALGFRVPAQSRLCRSKAELLDYYAGIGAGRAALPFDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+   LQ++LG R R+PRW  +HKF  ++A T L  I IQ+GRTG LTPVA LEPV +GG
Sbjct: 307 VNRLDLQERLGFRTRTPRWATAHKFPAERAQTLLRAITIQVGRTGALTPVAELEPVTVGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++ ATLHN D I             +DIRVGD V+V+RAG+VIP+VV+++   R  D+
Sbjct: 367 VVVSRATLHNADEI-----------ARKDIRVGDTVVVQRAGDVIPQVVEVVTERRPADS 415

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF FP  CP C S  VR+ +       A  RCTGGL C AQ +ERL+HFVSR+AF+IEG
Sbjct: 416 APFVFPDHCPECGSAAVREEDG------AVSRCTGGLVCPAQAVERLRHFVSRNAFDIEG 469

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +++  F+  +     IR PADIFTL+RR+     ++  + GFG  SV NL+ +I+ R
Sbjct: 470 LGIERIQLFYDQD----RIRSPADIFTLERREAQRLDRLVAMTGFGRKSVENLFRAIDAR 525

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII---AHNNDD-------- 594
           R I L+RFIF+LGIR VG   A+ LA+ Y S   + + +       + N D+        
Sbjct: 526 RRIPLDRFIFALGIRQVGEATAKLLARTYRSVGPWTERMAAAAAERSANPDEAKKPELVG 585

Query: 595 --WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIEN 649
             +  L  +  +G  +A  I  F+  P N  A++ALLKE+  ++  H    +   S +  
Sbjct: 586 EAYAELCAIEQIGMSVADDICAFFAEPHNRDALDALLKELE-AVEDHVPPPRADGSPVAG 644

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K +VFTGTL+ + R +A+     LGA V+  +S KTD ++VG + GSK  KA++LG+ I+
Sbjct: 645 KTVVFTGTLETMGRSEAKARAEALGAKVAGSVSGKTDYVVVGADAGSKAAKARELGLTIL 704

Query: 710 NEEQFLFLLQQ 720
            E+++L L+ Q
Sbjct: 705 TEQEWLDLISQ 715


>gi|163731899|ref|ZP_02139346.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149]
 gi|161395353|gb|EDQ19675.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149]
          Length = 705

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/716 (40%), Positives = 445/716 (62%), Gaps = 17/716 (2%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
            +P+++L+ + A +ELS L + +   +  Y+    P + D+EYDA KRR  A+   FP L
Sbjct: 3   FVPLDSLNEKAAEEELSRLAELLEQANTAYHTKDAPFMSDAEYDAYKRRNLALEDRFPHL 62

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R++ P    + +G   +    KV+HS+  LSL   ++ ED+  F+ RI +     D   
Sbjct: 63  KRADSPT---DVVGAAPSAGFAKVSHSMAMLSLANAFDDEDVFDFVQRIRKHLGLSDAEP 119

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + FT EPKIDG  +++RYE G  V AA RGDG  GE+V+A    I  IP+ +  N P+++
Sbjct: 120 LHFTSEPKIDGLSLSLRYENGALVQAATRGDGAVGENVTANALTINDIPQRVP-NAPDVL 178

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL 243
           EVRGEVY+S  DF ALN++  A G K +ANPRNAA+G LR+L+   IT  R L FF +  
Sbjct: 179 EVRGEVYMSHTDFEALNEKQNAAGAKAFANPRNAAAGSLRQLDAR-ITQNRPLRFFAYAW 237

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G  +    K Q + +++++ LGF  N    + +    +++ Y  ++  R++L YDIDG+V
Sbjct: 238 GTLTAPLGKTQSDSIERLKNLGFQTNELTDRCDGPEALLAQYRRIEERRASLDYDIDGVV 297

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+  LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL+P+ +
Sbjct: 298 YKVDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTELQSIDIQVGRTGALSPVARLKPITV 357

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++NATLHNEDYI G D  G V+R G+DIR GD V V RAG+VIPKV D+ +++R  
Sbjct: 358 GGVVVSNATLHNEDYIAGRDNKGGVIRDGKDIRAGDYVQVYRAGDVIPKVADVDLDKRPA 417

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +A PF FP+ CP C S  +R+         A  RCTGGL C AQ +ERLKHFVSR AF+I
Sbjct: 418 EAIPFVFPTTCPECGSDALREAGD------AVRRCTGGLICPAQAVERLKHFVSRAAFDI 471

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG +Q++ F+K       +  PADIFTL+ R ++   +++N  G+G+ S TNL+D+I+
Sbjct: 472 DGLGAKQIEQFYKDG----WVSEPADIFTLRDRYESGMQQLKNRDGWGEKSATNLFDAID 527

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           ++R I L R +F+LGIRHVG   +  +A++Y ++  F +          D W  L+ +  
Sbjct: 528 EKREIPLARLLFALGIRHVGEAASNLIAQHYSTFDAFEKSTLAAQIEEGDAWDDLLSIDG 587

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG ++AQ++V     P    +++ L+ ++     +   +  S +  K +VFTGTL+++ R
Sbjct: 588 VGTVMAQSLVHTMGQPAERASIDRLVAQLKVQPSKPIVSDGSPVAGKTVVFTGTLERMTR 647

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+     LGA V+  +S KTD ++ G   GSK +KA +LG++ ++E+ +L L++
Sbjct: 648 AEAKSRAESLGAKVAGSVSAKTDFLVAGPGAGSKAKKAVELGIRTLDEDGWLALIE 703


>gi|296445905|ref|ZP_06887856.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b]
 gi|296256573|gb|EFH03649.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b]
          Length = 713

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/720 (40%), Positives = 452/720 (62%), Gaps = 33/720 (4%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           +R+  P+  LS  +A+ E S L +EI+ +D  YYQ   P I D+EYDAL++R +A+  AF
Sbjct: 15  ERERPPVAELSPRRAKLEHSRLAEEIAEYDRRYYQEDDPAISDAEYDALRQRYEALEKAF 74

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           P+L      +  L K  G      F K+ H +  LSL  ++  E++ +F+ R+ RF    
Sbjct: 75  PELG----GDASLTKTVGAAPAEKFAKIRHVVRMLSLGNVFADEEVHEFVARVRRFLNFS 130

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
           D   + FT EPKIDG   ++RYEKG+ V AA RGDG  GED++A IR +  IP+ L  + 
Sbjct: 131 DAAPLLFTAEPKIDGLSCSLRYEKGELVSAATRGDGEEGEDITANIRTLEEIPQRLRGDV 190

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF 239
           IPE++E+RGEVY+ + DF ALN      G+  +ANPRN+A+G LR+L+P    +R L FF
Sbjct: 191 IPEVLEIRGEVYMRREDFFALNQRQAEAGKPLFANPRNSAAGSLRQLDPNVTASRPLRFF 250

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +G G+ S + A  Q  M+Q     G   N   +   +   ++++Y  ++++R+TL YDI
Sbjct: 251 AYGWGEVSVMPADTQLGMVQAFASFGLATNPLTQLCGSAEELLAHYRNIEALRATLGYDI 310

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD+  LQ +LG  +R+PRW ++HKF  +QA T + DI+I +GRTG LTP+ARLE
Sbjct: 311 DGVVYKVDDIGLQIRLGFVSRAPRWAVAHKFPAEQAKTIVRDIEINVGRTGALTPIARLE 370

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNED I             +DIR+GD V+V+RAG+VIP++V+++++
Sbjct: 371 PVTVGGVVVSNATLHNEDEI-----------ARKDIRIGDTVVVQRAGDVIPQIVEVVLD 419

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   A P+ FP  CP C S  +R+++ K G      RCTG L C AQ +ERLKHF SR+
Sbjct: 420 KRPEGATPYVFPHECPACGSAALREIDEK-GVEDVVRRCTGSLVCPAQAIERLKHFASRN 478

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG +Q+++FF        +R  ++IFTL  R + S TK+EN  G+G+ SV NL+
Sbjct: 479 AMDIEGLGDKQIEYFFTD----GLVRTASEIFTLAERDRASLTKLENKEGYGETSVRNLF 534

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I+ RR + + RF+++LGIRHVG   AR LA+++  + +  ++     A  ++    + 
Sbjct: 535 AAIDARRTVPINRFLYALGIRHVGETNARRLARHFPDFASL-RDTAREAAPGSEARERIE 593

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFT 655
            +  +G ++A+A+ +F+  P N   ++ALL  VS    P+I       +S +  K +VFT
Sbjct: 594 SIEGIGGVVAEALHDFFAEPHNEREIDALLAHVSLEPMPTI-----ENASPVAGKTVVFT 648

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G L+++ R +A+    + GA +S  +S+KTD+++ G   GSKL KA++LGV++++EE++ 
Sbjct: 649 GALERLTREEAKAQAERFGAKISGSVSKKTDLVVAGPGAGSKLAKAKELGVEVISEEEWF 708


>gi|300021787|ref|YP_003754398.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523608|gb|ADJ22077.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888]
          Length = 712

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/712 (41%), Positives = 447/712 (62%), Gaps = 26/712 (3%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+E    E++ L  EI  HD+ YY+   P I D++YDAL+RR   +  A P+L R+  
Sbjct: 20  ATSVED---EIARLSAEIERHDELYYRNDAPEISDADYDALRRRLTQLEDAHPELKRAGS 76

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+    K+G     +  K+ H +P LSL   ++ +D+  F+ R+ RF    + + +  T 
Sbjct: 77  PS---EKVGSAPVAAFGKIAHDVPMLSLGNAFDDQDVVDFVQRVRRFLNLGESDELEITA 133

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRG 189
           EPKIDG  I+IRYE G+ V AA RGDG  GE+V+A ++ I  IP +L   ++P++I++RG
Sbjct: 134 EPKIDGLSISIRYEGGRLVQAATRGDGAEGENVTANVKTIKDIPHLLVGKDVPDVIDIRG 193

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E+Y+   DF  LN    A G K +ANPRNAA+G LR+L+ +    R L FF +  G  S+
Sbjct: 194 EIYLGHKDFEKLNAAQAASGGKVFANPRNAAAGSLRQLDSSITAQRPLQFFAYAWGAASK 253

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +  Q  ++   +  G PVN  +    +   ++ YY  ++S R+ L YDIDG+VYKV+ 
Sbjct: 254 LPSDTQRGVVAAFKSWGLPVNPLMEITRSPDELLDYYRGIESKRAKLDYDIDGVVYKVNR 313

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++LG  +RSPRW I+HKFA ++A+T L  IDIQ+GRTG LTPVA+LEPV +GG ++
Sbjct: 314 LDYQERLGFVSRSPRWAIAHKFAAERATTVLNKIDIQVGRTGALTPVAKLEPVTVGGVVV 373

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHNED I             +DIR GD V+V+RAG+VIP++V++++++R   A P+
Sbjct: 374 SNATLHNEDEIS-----------RKDIREGDTVVVQRAGDVIPQIVEVVLDKRPQHAAPY 422

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CPIC S  VR+ + +        RCTGGL C AQ  ERLKHFVSR+AF+IEGLG 
Sbjct: 423 KFPAVCPICGSHAVRESDEEGNAADVVRRCTGGLVCGAQLKERLKHFVSRNAFDIEGLGG 482

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           ++++FFF++      I+  ADIFTL++R Q S   +  + GF + SV  L+ +IN RR +
Sbjct: 483 EKIEFFFETG----RIKSAADIFTLEKRDQKSDEPLTKVRGFKETSVNKLFAAINARRTV 538

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--AHNNDDWLSLIRVPLVGD 606
            L+RF+F+LGIRH+G   A+ LAK Y +++     ++  I     ++ +  +  +  +G+
Sbjct: 539 PLDRFLFALGIRHIGETTAKDLAKAYGTFEALRAAVDAAIQGGKGSEAYQDIDNIEGIGE 598

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  A+++F+    N   ++ALLKEV+ +  +  + VSS +  K +VFTGTL K+ R++A
Sbjct: 599 TVVDALIDFFSEQHNQEQLDALLKEVNVTAFKRVQ-VSSPVTGKTVVFTGTLTKLTRNEA 657

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +    +LGA VS  +S+KTD ++ G   GSKL+ A+ LGV +++E+ +L L+
Sbjct: 658 KAQAERLGAKVSGSVSKKTDYVVAGAEAGSKLDNARALGVIVLDEDGWLELI 709


>gi|159044058|ref|YP_001532852.1| DNA ligase [Dinoroseobacter shibae DFL 12]
 gi|190359252|sp|A8LK52|DNLJ_DINSH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157911818|gb|ABV93251.1| DNA ligase [Dinoroseobacter shibae DFL 12]
          Length = 741

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 300/713 (42%), Positives = 437/713 (61%), Gaps = 17/713 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + +EALS   ARKEL+ L + ++  +  Y++   P + D++YDALK+R  AI   FPDL 
Sbjct: 40  VAVEALSEAAARKELARLSELLARANAEYHRDDAPSLSDADYDALKQRNAAIEARFPDLK 99

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R + P+   +++G   + +  KVTH++  LSL   ++ ED+R F TRI RF    +D  +
Sbjct: 100 RGDSPS---DQVGAAPSDTFSKVTHAVRMLSLANAFSDEDIRDFDTRIRRFLGLAEDAPL 156

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE G  V AA RGDG  GE+V+A  R I  IP  L    PE++E
Sbjct: 157 AYTAEPKIDGLSLSLRYEHGTLVQAATRGDGAVGENVTANARTIDDIPHRLD-GAPEVLE 215

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLG 244
           VRGEVY+S  DF  LN      G K +ANPRNAA+G LR+L+  +ITR   L FF +  G
Sbjct: 216 VRGEVYMSHADFAELNARQAETGGKTFANPRNAAAGSLRQLD-AEITRARPLKFFAYAWG 274

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S   A+ Q E L + R  GF +N    +  T   +++ Y  +++ R+TL YDIDG+VY
Sbjct: 275 EISAPLAETQTETLARFREFGFTINPLTVRCETPEDMLAQYRAIEAQRATLGYDIDGVVY 334

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+D+  LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +G
Sbjct: 335 KLDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLAPVTVG 394

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYI+G D +G  +R G DIRVGD V V RAG+VIPK+ D+ ++ R   
Sbjct: 395 GVVVSNATLHNEDYIQGRDNTGAPIRWGTDIRVGDWVQVYRAGDVIPKIRDVDLSRRPEG 454

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A PF FP+ CP C S   R+         A  RC+GGL C AQ +E+LKHFVSR A +I+
Sbjct: 455 AAPFDFPTTCPECGSDAPREPGD------AVRRCSGGLICPAQAVEKLKHFVSRGALDID 508

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +Q++ F++       I  PADIFTL+ R      +++N  G+GD S  NL+ +I+ 
Sbjct: 509 GLGAKQVEQFYRDG----WIAEPADIFTLRARFGQGLQQLKNREGWGDKSAENLFRAIDT 564

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R     + +F LGIRH+G   +  LA +YL+ +     ++  +   +D W  L+ +  V
Sbjct: 565 ARTAPFAKVLFGLGIRHIGESASSLLANHYLTMEALLAAVDAAVDETSDAWADLLNIDGV 624

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+++A+A+V          +V  LL ++ P+     +   S +  K LVFTGTL+ + R 
Sbjct: 625 GEVMARALVTTLTQEAERASVNRLLAQIDPAPATPPQVGDSPVAGKTLVFTGTLETMSRA 684

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +A+     LGA V+  +S KTD++I G   GSK  KA+ LG+++++E+ +  L
Sbjct: 685 EAKATAEALGAKVAGSVSAKTDLLIAGPGAGSKATKAEALGIEVIDEDAWRVL 737


>gi|298293088|ref|YP_003695027.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506]
 gi|296929599|gb|ADH90408.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506]
          Length = 725

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 298/728 (40%), Positives = 451/728 (61%), Gaps = 31/728 (4%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+ ++A KE + L  EI+ HD  YYQ   P + D++YDAL+RR +AI   FP+L 
Sbjct: 8   IDVEKLTADEAAKEHARLGDEIAGHDRRYYQDDAPSVSDADYDALRRRYEAIEAQFPELK 67

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             +  +    K+G   +    KV H +P LSL   +  E++ +F+ R+ RF     D  +
Sbjct: 68  GIDSLS---EKVGAAPSSKFAKVRHRVPMLSLGNAFADEEVEEFVARVRRFLGLSADAEV 124

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEII 185
            FT EPKIDG   ++RYE G+FV AA RGDG  GEDV+  +R I  IP  L  N +P I 
Sbjct: 125 AFTAEPKIDGLSCSLRYENGQFVQAATRGDGFEGEDVTNNVRTIGEIPERLKGNDVPGIF 184

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY+   DF A+N+   A G+  +ANPRNAA+G LR+L+P    +R L FF +  G
Sbjct: 185 EVRGEVYMGHADFAAINERQSASGKPLFANPRNAAAGSLRQLDPKITASRPLRFFAYAWG 244

Query: 245 KTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           + ++  + +  Q+ +++     G P N       +   ++++Y+ ++  R++L YDIDG+
Sbjct: 245 EVADGALPSDTQFGVIEAFSRWGLPTNPLTVLCRSAQELLAHYHAIEEQRASLGYDIDGV 304

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKVD  +LQ++LG  +RSPRW ++HKF  ++A T+L  I+IQ+GRTG LTPVA+L P+ 
Sbjct: 305 VYKVDSLALQQRLGFVSRSPRWALAHKFPAQRAITQLERIEIQVGRTGALTPVAKLTPIT 364

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGG-----RDIRVGDRVLVKRAGEVIPKVVDII 417
           +GG +++NA+LHNEDYIKG+   G  +RG       DIR GD V+++RAG+VIP+VV + 
Sbjct: 365 VGGVVVSNASLHNEDYIKGIGGDGLPIRGTFNDEPVDIREGDWVVIQRAGDVIPQVVSVE 424

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           +  R  DA+P+ FP+ CP C S  VR+         A  RCTGGL C AQ +ER++HFVS
Sbjct: 425 LERRPKDAKPYQFPTICPACGSHAVREDGE------AVRRCTGGLICPAQAVERIRHFVS 478

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT--STTKIENILGFGDVSV 535
           RDAF+IEGLG++Q+  FF   D    ++ PADIFTL+ R     S T+++N  G+G+ S 
Sbjct: 479 RDAFDIEGLGEKQVQAFF---DWGL-VKQPADIFTLEARDSAPDSLTRLKNRDGWGETSA 534

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI------NNIIA 589
            NL+ +I  RR + + RF+++LGIRH+G   A+ L ++Y + +   +             
Sbjct: 535 KNLFAAIAARRKVPVNRFLYALGIRHIGETNAKRLMRHYPTIEALREAALAAEMPGEAYP 594

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
             N+ W  +  +  +G ++A+A+V+F+  P N  A++ALLKEV+P            +  
Sbjct: 595 KGNEAWAEMNAIEGIGAVVAEAVVDFFHEPNNEAALDALLKEVTPEP-MEAVAGGGAVAG 653

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K +VFTG L+K+ R +A+    +LGA V+  +S+KTD ++ G + GSKL KA++LGV ++
Sbjct: 654 KTVVFTGALEKMTRDEAKAMAERLGAKVAGSVSKKTDYVVAGADAGSKLAKARELGVSVL 713

Query: 710 NEEQFLFL 717
            E+++L L
Sbjct: 714 TEDEWLEL 721


>gi|83942325|ref|ZP_00954786.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36]
 gi|83846418|gb|EAP84294.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36]
          Length = 706

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 298/712 (41%), Positives = 437/712 (61%), Gaps = 17/712 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ LS E+A+ EL+ L   +   +  Y+    P + D+EYD LKRR  AI   FP L R+
Sbjct: 7   LQELSEEEAKAELARLADLLGRANTAYHTQDAPDLSDAEYDRLKRRNQAIEERFPGLKRA 66

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+   +K+G        KV H +  LSL   +  ED+  F  RI ++        + F
Sbjct: 67  DSPS---DKVGATPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPSGTPLAF 123

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I TIP  +    P ++EVR
Sbjct: 124 TAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDTIPTRIK-GAPALLEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKT 246
           GEVY+  +DF ALN    A G K +ANPRNAA+G LR+L+P +ITR   L FF +  G  
Sbjct: 183 GEVYMRHDDFDALNARQTANGGKTFANPRNAAAGSLRQLDP-EITRARPLAFFAYAWGAL 241

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S   A+ Q++ +++++  GF  N      +    ++++Y +++  R+TL YDIDG+VYKV
Sbjct: 242 SAPLAESQFQAIERLKAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYKV 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++  LQ +LG R+ +PRW I+HKF  + A TRL DI IQ+GRTG L+PVARL PV +GG 
Sbjct: 302 NDLGLQDRLGFRSTTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLHPVTVGGV 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNEDYIKGLD+ G  +R G+DIRVGD V V RAG+VIPK+ D+ + +R  DA+
Sbjct: 362 VVSNATLHNEDYIKGLDSKGARIREGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPEDAR 421

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + +P+ CP C S  +R+         A  RCTGGL C AQ +E+LKHFVSR AF+I+GL
Sbjct: 422 AYVYPTTCPECGSDAIREEGD------AVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGL 475

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++ F+        I  PADIFTL+ R  +   +++N  G+G+ S   L+ +I  +R
Sbjct: 476 GAKQVEQFYGDG----WIAEPADIFTLKTRYGSGMQQLKNREGWGEKSADKLFQAIEDKR 531

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            ISL R IF+LGIRHVG   +  +A++Y S+  F   + +  + +   W  LI V  VG 
Sbjct: 532 KISLSRLIFALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGDGPAWDDLIGVDGVGQ 591

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++AQ++V  +       +++ L+ E+S           S +  K +VFTGTL+K+ R +A
Sbjct: 592 VMAQSLVSTFAQEAERASIDRLVTELSVQDVALPDTEGSPVAGKTVVFTGTLEKMTRAEA 651

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +    +LGA VS  +S KTDI++ G   GSK +KA  LG++ ++E+ +L L+
Sbjct: 652 KARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALI 703


>gi|13471538|ref|NP_103104.1| DNA ligase [Mesorhizobium loti MAFF303099]
 gi|75543387|sp|Q98KC4|DNLJ_RHILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|14022280|dbj|BAB48890.1| DNA ligase [Mesorhizobium loti MAFF303099]
          Length = 734

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 301/732 (41%), Positives = 438/732 (59%), Gaps = 32/732 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+++LS  +A  EL  L +EI+ HD  Y+    P I D+EYDAL+RR  AI   FP L R
Sbjct: 5   PVDSLSESEAEAELKRLAEEIAGHDRRYHAEDAPTITDAEYDALRRRNLAIEERFPGLVR 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            + P+    ++G        KV H++P LSL K +  ED+  FI R  RF+ +  D  I 
Sbjct: 65  EDSPS---RRVGAPPAEGFAKVRHAVPMLSLAKAYTDEDVTDFIERGRRFFDRDKDLDIA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           FT EPKIDG   ++RYE G FV  A RGDG  GED++A +R I  IP  L     P++IE
Sbjct: 122 FTAEPKIDGLSASLRYENGVFVQGATRGDGAVGEDITANLRTIADIPAKLKGSGWPDVIE 181

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           +RGEVY++  +F AL     A G + Y NPRN A+G LR+ + +   +R L FF +  G 
Sbjct: 182 IRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKFFAYAWGF 241

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           T+   A  QYE +QK    GF ++  + +A +   +V+ Y+ ++  RS+L YDIDG+VYK
Sbjct: 242 TTADPAPTQYESVQKFADWGFKISPLMVRAKSVEELVAQYHLIEEQRSSLGYDIDGVVYK 301

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+  LQ++ G     PRW ++HKF  +QA T +  IDIQ+GRTG L PVARL PV +GG
Sbjct: 302 VDQLELQRRWGFVTGEPRWAVAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVGG 361

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ N TLHNEDYIKG D++G  +R G D+R+GD V+++RAG+VIP++V +++++R  DA
Sbjct: 362 VVVENVTLHNEDYIKGFDSNGLPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPADA 421

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP  CP+C S   R++N KTGK  +  RCTG L C+AQ +ERL+HFVSR A +IEG
Sbjct: 422 VPYEFPHTCPVCGSPATREINEKTGKEDSRRRCTGELICAAQAVERLRHFVSRGALDIEG 481

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI-------------------EN 526
           LG + +D FF     A  I+  ADIFTL+ R+   T  +                   +N
Sbjct: 482 LGAENIDTFFN----AGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAASGKTRKN 537

Query: 527 ILGFGD---VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
           +    D     +  L+ +I+ RR   L+RFIF+LGIRH+G   A  LAK + + +   + 
Sbjct: 538 VRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLAKTFSTIEELIR- 596

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           +    A   D       V  +GD +  A+ +F+ N RN   ++ LL++V P       + 
Sbjct: 597 VGKETAAAEDPHTVFPSVNGIGDTVIDALCDFFGNERNDDVLDKLLEQVKPKPYIVTVSA 656

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
            SE+  K +VFTGTL+K+ R +A+    +LGA V+  +S KTD+++ G   GSKL+ A +
Sbjct: 657 DSEVAGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGSKLKLASE 716

Query: 704 LGVKIMNEEQFL 715
           LGV++++E+ +L
Sbjct: 717 LGVEVIDEDTWL 728


>gi|86749131|ref|YP_485627.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2]
 gi|123004307|sp|Q2IYJ4|DNLJ_RHOP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86572159|gb|ABD06716.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2]
          Length = 714

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 305/720 (42%), Positives = 445/720 (61%), Gaps = 27/720 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I  L+  +A+ E   L  EI  H+  YYQ+  P + D+EYDAL+RR +AI   FP+L  +
Sbjct: 11  IATLTKAKAKVEAMRLRLEIERHNSAYYQHDAPTVSDAEYDALRRRLEAIEAKFPELVSA 70

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P   +G        KV H++P LSL   +  +++ +F+ R+ RF +     SI  
Sbjct: 71  ---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVTEFVERVQRFLRLDAVPSI-- 125

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
             EPKIDG  +++RYE G+ + AA RGDG +GEDV+A +R I  IP  L +  IP   E+
Sbjct: 126 VAEPKIDGLSLSLRYEHGELMRAATRGDGFTGEDVTANVRTIADIPTTLKAKTIPAACEL 185

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEVY+ K DFLALN      G   +ANPRN+A+G LR+ +     +R L FF +  G+ 
Sbjct: 186 RGEVYMLKQDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAYAWGEM 245

Query: 247 SE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           S+  +    Q++ML  ++  GF VN  +    +    +++Y  +   R+ LPYDIDG+VY
Sbjct: 246 SDYPMDEPTQFKMLGWLKQAGFVVNPEITLCTSVDDALAFYRRIGEQRAALPYDIDGVVY 305

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG LTPVARL+PV +G
Sbjct: 306 KVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLQPVTVG 365

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++ NATLHNEDYIKGL   G  +R G DIR GD V+V+RAG+VIP++V +++++R  D
Sbjct: 366 GVVVQNATLHNEDYIKGLGNDGSPLRDGVDIREGDTVVVQRAGDVIPQIVSVVLDKRPAD 425

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A P+ FP  CP+C S   R+         A  RCTG L C AQ +ERLKHFVSR AF+I+
Sbjct: 426 ATPYHFPHKCPVCGSHAAREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDID 479

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q+  F +       ++ PADIFTLQ R   +  K+E+I G+G+ SV NL+ +I+ 
Sbjct: 480 GLGEKQIVLFHERG----WVKEPADIFTLQARN--AALKLEDIEGYGETSVRNLFAAIDA 533

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ------NFAQEINNIIAHNNDDWLSL 598
           RR I L R IF+LGIRHVG   A+ LA++Y +          A E      + ++ +  L
Sbjct: 534 RRTIELHRLIFALGIRHVGEGNAKLLARHYGTLDAFLAAMRAAAEGQTEEGNTSEAYQDL 593

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  +G+++A A+VEF+  PRN+ A++ALL E+   +   +    + +  K +VFTG+L
Sbjct: 594 DNIAGIGEVVAAAVVEFFAEPRNVAALDALLAELKDVLPAEQARRDTAVAGKTVVFTGSL 653

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            K  R +A+    +LGA V+  +S+KTD ++ G + GSKL KA+ LGV ++ E+++L L+
Sbjct: 654 TKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGADAGSKLTKAKDLGVAVLTEDEWLALI 713


>gi|209884394|ref|YP_002288251.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5]
 gi|254781382|sp|B6JB45|DNLJ_OLICO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|209872590|gb|ACI92386.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5]
          Length = 706

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 305/725 (42%), Positives = 446/725 (61%), Gaps = 33/725 (4%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           K+ L  ++ L+  QA+ E   L  EI+ HD+ YYQ   P + D+ YD+L++R +A+   F
Sbjct: 6   KKPLPSVDQLTKAQAKVEHKRLALEIAMHDERYYQKDAPTVSDAAYDSLRQRLNAVEARF 65

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L  ++ P+    K+G + + +  K+ H++P LSL   ++ E++ +F+ R+ RF     
Sbjct: 66  PELVTTDSPS---QKVGAQPSRAFAKIRHAVPMLSLGNAFSDEEVAEFVARVRRFLNLGA 122

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNI 181
           D  +    EPKIDG  +++RYE G+ V AA RGDG  GEDV+A +R I  +P  L   NI
Sbjct: 123 DEPLAVVAEPKIDGLSLSLRYENGELVNAATRGDGFEGEDVTANVRTIKDVPHKLKGKNI 182

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFV 240
           P + EVRGEVY+ + DFL LN +    G   +ANPRN+A+G LR+ N     +R L FF 
Sbjct: 183 PAVCEVRGEVYMLREDFLTLNKKQADSGDTIFANPRNSAAGSLRQKNVAITASRPLKFFA 242

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           +  G+ S + A  Q+EM++     GF VN  +        ++ YY E+++ R+ L YDID
Sbjct: 243 YAWGEMSAMPATTQFEMVKWFEKAGFAVNPRMILCRDVEALLRYYREIETERAQLSYDID 302

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKVD    Q +LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG LTPVARL  
Sbjct: 303 GVVYKVDRLDWQTRLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLAA 362

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG ++ NATLHNED I             +DIR GD V+++RAG+VIP+VV ++ ++
Sbjct: 363 VTVGGVVVQNATLHNEDEI-----------ARKDIREGDTVVIQRAGDVIPQVVSVVTDK 411

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R   A+P+SFP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFVSR A
Sbjct: 412 RPKHAKPYSFPHVCPVCGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRLA 465

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +Q+  F+ ++     I  P DIFTL +R   +T K+++  G+GDVSV NL+ 
Sbjct: 466 FDIEGLGDKQIHEFYDAK----LIMHPVDIFTLAKRDAHATDKLKDREGYGDVSVRNLFA 521

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------ 594
           +I+ RR I L R IF+LGIRHVG   A+ LA++Y + +NF   +    A   ++      
Sbjct: 522 AIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGTIENFRAAMAEAAAAQTEEGNPSEA 581

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
           +  L  +  VGDI+A A+VEF+   RN+ A+  LL E+   +   +    S +  K +VF
Sbjct: 582 YADLNAIGGVGDIVADAVVEFFAEERNVKALNELLHEIE-VLPAEQVRADSAVAGKTVVF 640

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L K  R +A+    +LGA VS  +S+KTD ++ G+  GSKL KA++LGV ++ E+++
Sbjct: 641 TGSLTKFTREEAKAQAERLGAKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDEW 700

Query: 715 LFLLQ 719
           L L++
Sbjct: 701 LKLIE 705


>gi|163741160|ref|ZP_02148552.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis 2.10]
 gi|161385513|gb|EDQ09890.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis 2.10]
          Length = 741

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 304/755 (40%), Positives = 446/755 (59%), Gaps = 65/755 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++AR     L+ E+   D  Y+Q   P I D++YDA KR   A+A  FP+LA   D 
Sbjct: 1   MTSDEARARFLLLQDELRVADLAYHQADDPEISDADYDAKKREYRALAEHFPELA---DG 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
              L  +G  +     K+TH+   +SL   ++ ED+R F   + ++      + + +T E
Sbjct: 58  ATALETVGAPVASGFGKITHAQRMMSLGNAFDDEDVRDFDKGLRKYLGLGASDPLAYTAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYE GK ++AA RGDG  GE+V+   R I  IP+ ++   P ++EVRGEV
Sbjct: 118 PKIDGLSLSLRYENGKLIHAATRGDGAVGENVTENARTIADIPQEIAA-APAVLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEI 249
           Y+S  DF ALND   A G K +ANPRNAA+G LR+LN  +ITR   L FF +  G+ SE 
Sbjct: 177 YMSHEDFAALNDRHAAQGGKTFANPRNAAAGSLRQLN-AEITRSRPLRFFAYSWGELSEP 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A+ Q+E L ++R +GF  N   +  +T   +++ Y  +++ R+TL YDIDG+VYKVD  
Sbjct: 236 LAETQFEALARLREMGFQTNPLTKHCSTTDALIAQYRLIEAQRATLGYDIDGVVYKVDAL 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+PV +GG +++
Sbjct: 296 ALQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQPVTVGGVVVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ +++R  DA PF+
Sbjct: 356 NATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLSKRPEDAVPFA 415

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP C S  VR+         A  RCTGGL C AQ +E+LKHFVSR AF+I+GLG +
Sbjct: 416 FPAACPECGSDAVREEGD------AVRRCTGGLICPAQAVEKLKHFVSRKAFDIDGLGAK 469

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           Q++ F+   D   +I+ PADIFTLQ R   +  K++N  G+G+ S  NL+ +I ++R I 
Sbjct: 470 QIEAFYG--DAVLAIKTPADIFTLQARDAKTLAKLKNRDGWGETSAANLFAAIEEKRRIE 527

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------------ 585
           L R IF LGIRHVG   AR LA +Y  +   A  ++                        
Sbjct: 528 LARLIFGLGIRHVGEVGARDLALHYADWDAMAAAVDTARPAALAQRAADEAEDRERVAAA 587

Query: 586 -------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
                              N+ +     W  L  +  +G  +  ++ + + N     A +
Sbjct: 588 QENRRARIKEARDRAVATLNVPSEARAAWDDLTGIDGIGATLGVSLSDAFANTEERAAFD 647

Query: 627 AL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           AL   L  + P   +++    S +    +VFTGTL+K+ R +A+     LGA V+  +S+
Sbjct: 648 ALRGHLDIIPPEAPQND----SPVTGLTVVFTGTLEKMTRAEAKARAEGLGAKVAGSVSK 703

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           KTDI++ G   GSK +KA+ LGV+I++E+ +L L+
Sbjct: 704 KTDILVAGPGAGSKEQKARDLGVRILDEDGWLELI 738


>gi|319782858|ref|YP_004142334.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168746|gb|ADV12284.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 734

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 299/732 (40%), Positives = 441/732 (60%), Gaps = 32/732 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+++LS  +A  EL  L +EI+ HD  Y+    P+I D+EYDAL RR  AI   FP L R
Sbjct: 5   PVDSLSESEAEAELKRLAEEIAEHDRRYHTEDAPVITDAEYDALARRNLAIEERFPALVR 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            + P+    ++G        KV H++P LSL K +  +D+  FI R  RF+ +  +  I 
Sbjct: 65  EDSPS---LRVGAAPAEGFTKVRHAVPMLSLAKAYTDDDVTDFIERGRRFFDRDKELDIA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           FT EPKIDG   ++RYE G FV  A RG+G  GED++A ++ I  IP  L     PE IE
Sbjct: 122 FTAEPKIDGLSASLRYENGVFVQGATRGNGAVGEDITANLKTIADIPAKLKGSGWPETIE 181

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           +RGEVY++  +F AL     AVG + Y NPRN A+G LR+ +P+   +R L FF +  G 
Sbjct: 182 IRGEVYMTYAEFEALKQRSAAVGGQDYVNPRNTAAGSLRQKDPSVTASRNLKFFAYAWGY 241

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           T+   A  QY+ +QK    GF ++  + +A +   ++++Y+ ++  RS L YDIDG+VYK
Sbjct: 242 TTADPAPTQYDSVQKFAEWGFKISPLMVRAKSAEELIAHYHRIEEQRSALGYDIDGVVYK 301

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+  LQ++ G     PRW I+HKF  +QA T +  IDIQ+GRTG L PVARL PV +GG
Sbjct: 302 VDQLELQRRWGFVTGEPRWAIAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVGG 361

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ N TLHNEDYIKGLD++G+ +R G D+R+GD V+++RAG+VIP++V +++++R  DA
Sbjct: 362 VVVENVTLHNEDYIKGLDSTGQPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPADA 421

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP  CPIC S   R++N KTGK  +  RCTG L C AQ +E L+HFVSR A +IEG
Sbjct: 422 VPYEFPHTCPICGSPATREINEKTGKEDSRRRCTGELICPAQAVEGLRHFVSRGALDIEG 481

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI-------------------EN 526
           LG + +D FF     A  IR  ADIFTL+ R+   T  +                   +N
Sbjct: 482 LGAENIDTFFN----AGLIRTAADIFTLRDRRPAVTRALAERREEQARQREAASGKTRKN 537

Query: 527 ILGFGDVS---VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
           +    D +   +  L+ +I+ RR   L+RFIF+LGIRH+G   A  LA+ + + +   + 
Sbjct: 538 VRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLARTFSTIEELIR- 596

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           +    A   D       V  +GD +  A+ +F+ N RN   ++ALL++V P       + 
Sbjct: 597 VGKETAAAEDPHSVFPSVNGIGDTVIDALRDFFGNERNDDVLDALLRQVKPKPYIVNVSA 656

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
            SE+  K +VFTG+L+K+ R +A+    +LGA V+  +S KTD+++ G   GSKL+ A +
Sbjct: 657 DSEVAGKTVVFTGSLEKMTRSEAKAMAERLGAKVAGSVSAKTDLVVAGPGAGSKLKLASE 716

Query: 704 LGVKIMNEEQFL 715
           LG+++++E+ +L
Sbjct: 717 LGIEVIDEDAWL 728


>gi|163736311|ref|ZP_02143730.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis BS107]
 gi|161390181|gb|EDQ14531.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis BS107]
          Length = 752

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 305/758 (40%), Positives = 448/758 (59%), Gaps = 65/758 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +++L+ ++AR     L+ E+   D  Y+Q   P I D++YDA KR   A+A  FP+LA  
Sbjct: 9   LKSLTSDEARARFLLLQDELRAADLAYHQADDPEISDADYDAKKREYRALAEHFPELA-- 66

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            D    L  +G  +     K+TH+   +SL   ++ ED+R F   + ++      + + +
Sbjct: 67  -DGATALETVGAPVASGFGKITHAQRMMSLGNAFDDEDVRDFDKGLRKYLGLGASDPLAY 125

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK ++AA RGDG  GE+V+   R I  IP+ ++   P ++EVR
Sbjct: 126 TAEPKIDGLSLSLRYENGKLIHAATRGDGAVGENVTENARTIADIPQEIAA-APAVLEVR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKT 246
           GEVY+S  DF ALND   A G K +ANPRNAA+G LR+LN  +ITR   L FF +  G+ 
Sbjct: 185 GEVYMSHEDFAALNDRHAAQGGKTFANPRNAAAGSLRQLN-AEITRSRPLRFFAYSWGEL 243

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A+ Q+E L ++R +GF  N   +  +T   +++ Y  +++ R+TL YDIDG+VYKV
Sbjct: 244 SEPLAETQFEALTRLREMGFQTNPLTKYCSTTDALIAQYRLIEAQRATLGYDIDGVVYKV 303

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D  +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+PV +GG 
Sbjct: 304 DALALQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQPVTVGGV 363

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ + +R  DA 
Sbjct: 364 VVSNATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLPKRPEDAV 423

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF+FP+ CP C S  VR+         A  RCTGGL C AQ +E+LKHFVSR AF+I+GL
Sbjct: 424 PFAFPAACPECGSDAVREEGD------AVRRCTGGLICPAQAVEKLKHFVSRKAFDIDGL 477

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++ F+   D   +I+ PADIFTLQ R   +  K++N  G+G+ S  NL+ +I ++R
Sbjct: 478 GAKQIEAFYG--DAVLTIKTPADIFTLQARDAKTLAKLKNRDGWGETSAANLFAAIEEKR 535

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN--------------------- 585
            I L R IF LGIRHVG   AR LA +Y  +   A  ++                     
Sbjct: 536 RIELARLIFGLGIRHVGEVGARDLALHYADWDAMAAAVDTARPAALAQRAADEAEDRERV 595

Query: 586 ----------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
                                 N+ +     W  L  +  +G  +  ++ + + N     
Sbjct: 596 AAAQENRRARIKEARDRAVATLNVPSEARAAWDDLTGIDGIGATLGVSLSDAFANTEERA 655

Query: 624 AVEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           A +AL   L  + P   +++    S +    +VFTGTL+K+ R +A+     LGA V+  
Sbjct: 656 AFDALRGHLDIIPPEAPQND----SPVTGLTVVFTGTLEKMTRAEAKARAEGLGAKVAGS 711

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S+KTDI++ G   GSK +KA+ LGV+I++E+ +L L+
Sbjct: 712 VSKKTDILVAGPGAGSKEQKARDLGVRILDEDGWLELI 749


>gi|254440003|ref|ZP_05053497.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307]
 gi|198255449|gb|EDY79763.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307]
          Length = 706

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 297/712 (41%), Positives = 440/712 (61%), Gaps = 15/712 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE L+ ++A +EL+ L   ++  +  Y+Q   P I D++YDALK R   I   F DL R 
Sbjct: 7   IENLTKDEAAQELARLSALLAQANAEYHQADAPRIPDADYDALKLRNAMIEARFSDLKRR 66

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+     +G        KV H++  LSL   +  +D+ +F   + +F   +  + + F
Sbjct: 67  DSPS---ETVGATPADGFGKVPHALRMLSLGNAFTDDDVTEFDKSVRKFLGLETGD-LAF 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK V AA RGDG  GE+V+A  R I  +P+VL L+ P+I+EVR
Sbjct: 123 TAEPKIDGLSLSLRYENGKLVQAATRGDGAVGENVTANARTIKDVPQVL-LDAPKILEVR 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+S +DF ALN     VG K +ANPRNAA+G LR+L+ +   +R L FF +  G+ S
Sbjct: 182 GEVYMSHSDFAALNTRQSNVGSKTFANPRNAAAGSLRQLDASITKSRPLKFFAYAWGEVS 241

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A  Q   + +++ LGF  N   +   +   ++++Y +++  R+TL YDIDG+VYKVD
Sbjct: 242 APLADTQSGAIARLKTLGFQTNPLTKICASPSEMIAHYRDIEMQRATLGYDIDGVVYKVD 301

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + SLQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +GG +
Sbjct: 302 DLSLQRRLGFRSTTPRWAIAHKFPAELAWTTLDAIDIQVGRTGALSPVARLSPVTVGGVV 361

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           + NATLHNEDYI G    G  +RGG+DIRVGD V + RAG+VIPKV D+ +++R  +  P
Sbjct: 362 VANATLHNEDYIAGRGNKGDDIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSKRLGETAP 421

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP+ CP C S  VR+     G +V   RCTGGL C AQ +E+LKHFVSR AF+I+GLG
Sbjct: 422 FDFPTTCPKCGSDAVRE----EGDVV--RRCTGGLICPAQAVEKLKHFVSRAAFDIDGLG 475

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +Q++ F+   D   +++ PADIFTL  R   S TK+ N  G+GD SV  L+ +++++R 
Sbjct: 476 AKQIEAFYN--DDQLAVKEPADIFTLGARDMGSLTKLANRDGWGDTSVKKLWQAVDEKRE 533

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           I + R IF+LGIRHVG   +  LA +Y ++  F   +          W  L+ +  VG +
Sbjct: 534 IPVARLIFALGIRHVGENASNLLAIHYGTWSTFEDAMTQASVGEGAGWDDLLGIDGVGAV 593

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A ++V  +       +++ L+ ++ P      ++ +S +  K +VFTG+L+K+ R +A+
Sbjct: 594 MAASVVTTFHQSAERASIDRLVAQLRPQDSARPRS-NSPVAGKTVVFTGSLEKMTRAEAK 652

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                LGA VS  +S KTD++I G   GSK +KA  LG++ M+E+ +L L +
Sbjct: 653 ARAESLGAKVSGSVSAKTDLLIAGPGAGSKAKKATDLGIETMDEDGWLALTK 704


>gi|126726435|ref|ZP_01742276.1| DNA ligase [Rhodobacterales bacterium HTCC2150]
 gi|126704298|gb|EBA03390.1| DNA ligase [Rhodobacterales bacterium HTCC2150]
          Length = 705

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 298/712 (41%), Positives = 439/712 (61%), Gaps = 18/712 (2%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++ +AR EL  L + I+  +  Y+    P I D+EYD L+R    I  AFPDL R++ P
Sbjct: 8   MTMAEARSELKRLAKVIAAANSSYHTADAPEISDAEYDRLRRLNSEIEAAFPDLKRADSP 67

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +   + +G E+  +  KV H +  LSL   +   ++  F+ R+  +        + FT E
Sbjct: 68  S---DNVGAEVAEAFSKVKHDVRMLSLGNAFEDTEVDDFVGRVRSYLGHV--GPLAFTAE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYE G+ V AA RGDG +GE+V+   R I  IP  L  N P+++EVRGEV
Sbjct: 123 PKIDGLSLSLRYENGELVQAATRGDGETGENVTHSARTISNIPHHLD-NAPDLLEVRGEV 181

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEI 249
           Y+  +DF ALN+  I  G K +ANPRNAA+G LR+L+  +ITR   L FF +  G  SE 
Sbjct: 182 YMRHDDFAALNERQIEKGEKTFANPRNAAAGSLRQLD-ANITRSRPLAFFAYAWGALSEP 240

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A  Q   + ++R LGF  N+  +   +   ++++Y  ++  RSTL YDIDG+VYKVD+ 
Sbjct: 241 LATTQLAAVNRLRSLGFQTNDLTKLCASAQELITHYKSIEEQRSTLGYDIDGVVYKVDDL 300

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+PV +GG +++
Sbjct: 301 ELQRRLGFRSTTPRWAIAHKFPAELAWTRLRGIDIQVGRTGALSPVARLDPVTVGGVVVS 360

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNEDYI+G    G+ +R G+D RVGD V V RAG+VIPK+ D+ + ER  DA P+ 
Sbjct: 361 NATLHNEDYIQGRGNKGEEIRDGKDFRVGDWVQVYRAGDVIPKLADVNLAERPDDAAPYE 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP CQS  +RD         A  RC+GGL C AQ +E+LKHFVSR  F+I+GLG +
Sbjct: 421 FPTICPECQSPAIRDDGD------AVRRCSGGLICPAQAIEKLKHFVSRGCFDIDGLGNK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK-IENILGFGDVSVTNLYDSINKRRNI 548
           Q++ FF   DP   ++ PADIFTLQ R   +  K ++N  G+GD S   L+ +I+++RNI
Sbjct: 475 QVEAFFG--DPELPVKEPADIFTLQVRDADNGLKRLKNRDGWGDKSTQKLFAAIDEKRNI 532

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R IFSLGIRHVG   A  LA+++ SY  F   ++     +++ +  LI +  VG++ 
Sbjct: 533 PLNRLIFSLGIRHVGEAAANLLARHFSSYDKFIIAMDEATDRDSNAYQDLIAIDGVGEVF 592

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A ++V  +       +++ L + ++          +S +  K +VFTGTL+++ R +A+ 
Sbjct: 593 ANSLVTAFSATSERASIDRLTQHLNIQDVVQADTGNSAVAGKIVVFTGTLEQMSRAEAKA 652

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
                GA VS  +S+KTDI++ G   GSK  KA  LG+ +++E  +L L+ +
Sbjct: 653 QAEAAGAKVSGSVSKKTDILVAGPGAGSKATKAAALGITVIDEAAWLALIAE 704


>gi|110634347|ref|YP_674555.1| DNA ligase, NAD-dependent [Mesorhizobium sp. BNC1]
 gi|123162160|sp|Q11GT5|DNLJ_MESSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110285331|gb|ABG63390.1| DNA ligase, NAD-dependent [Chelativorans sp. BNC1]
          Length = 703

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 304/712 (42%), Positives = 449/712 (63%), Gaps = 22/712 (3%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP++ L+ EQA+ EL+ L QEI  HD  YY    P + D+EYDAL+RR  AI  AFP+L 
Sbjct: 6   IPVDELTEEQAKDELARLAQEIGRHDRLYYSEDAPEVSDAEYDALRRRNLAIEQAFPNLI 65

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R++ P+    +IG        KV H +P LSL+  +  +D+  F+ R+ RF + +    I
Sbjct: 66  RADSPS---KRIGAPAVEKFEKVRHKVPMLSLDNAFTDDDVVDFVARVRRFLKMEPHAPI 122

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T EPKIDG  ++IRYE G+ V AA RGDG  GE+V+A  RA+  IP VLS + PEI+E
Sbjct: 123 AMTAEPKIDGLSLSIRYENGRLVSAATRGDGQVGENVTANARAVADIPNVLSGDFPEILE 182

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY++  DFLALN+   A G++ Y NPRN A+G LR+L+ +    R L FF +  G+
Sbjct: 183 VRGEVYMTHRDFLALNERQRAEGKQTYVNPRNTAAGSLRQLDASITAARPLKFFAYAWGE 242

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE+ ++ Q  M++ ++  GF  N  +    T   ++ +Y+ ++  R+TL YDIDG+VYK
Sbjct: 243 VSEMPSQTQMGMVEALKSYGFRTNKLMCLCETARELLEHYHAIEERRATLGYDIDGVVYK 302

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ +LQ++LG  +RSPRW I+HKFA ++A T L DIDIQ+GRTG LTPVARLEPV +GG
Sbjct: 303 VNDLALQQRLGYVSRSPRWAIAHKFAAEKAFTILRDIDIQVGRTGALTPVARLEPVTVGG 362

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++TNATLHN + I+ L            I++GD V V+RAG+VIP+++    + R  DA
Sbjct: 363 VVVTNATLHNAEEIERL-----------GIKIGDTVQVQRAGDVIPQILGYAEDRRPADA 411

Query: 426 QPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           + F FPS CP   ++ VVRD     G+ V   RC+G  AC  Q++E L+ FVSR AF+IE
Sbjct: 412 KEFVFPSVCPCELKTPVVRDSTAGGGEGV-VRRCSGEFACPFQRIEHLRLFVSRRAFDIE 470

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF+  DP   ++ PADIFTL  R   +  K+++  G+G VS  NL+ +I  
Sbjct: 471 GLGEKQIEFFFR--DPDLPVKSPADIFTLAERDAQNIKKLKDKEGWGTVSAGNLFAAIEA 528

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +R I L+R I+ LGIRHVG   A +LA+ Y S++ F      I   +      +  +  +
Sbjct: 529 KRTIPLDRMIYGLGIRHVGERTAVTLARGYGSWKAFHDSALAIAGGDLSAREEMDALEDI 588

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663
           GD +  AI  ++    N   VEAL  +V  ++   E+ V+ S +  K +VFTG L+++ R
Sbjct: 589 GDAVIDAIATYFAEEHNCRLVEALAAQV--NVLEAERPVADSPVAGKTIVFTGALERMSR 646

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++   +LGA V+  +S KTD+++ G   GSKL+KA +LG+++++E+ + 
Sbjct: 647 DEAKDMAERLGAKVAGSVSSKTDLVVAGPGAGSKLKKAAELGIEVIDEDMWF 698


>gi|83953544|ref|ZP_00962265.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1]
 gi|83841489|gb|EAP80658.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1]
          Length = 706

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 295/712 (41%), Positives = 434/712 (60%), Gaps = 17/712 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ LS E+A+ EL+ L   +   +  Y+    P + D+EYD LKRR  AI   FP L R+
Sbjct: 7   LQELSEEEAKAELARLADLLGRANAAYHTQDAPDLSDAEYDRLKRRNQAIEERFPRLKRA 66

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+   +K+G        KV H +  LSL   +  ED+  F  RI ++        + F
Sbjct: 67  DSPS---DKVGAAPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPSGTPLAF 123

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I TIP  +    P ++EVR
Sbjct: 124 TAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDTIPTRIQ-GAPALLEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKT 246
           GEVY+  +DF ALN    A G K +ANPRNAA+G LR+L+  +ITR   L FF +  G  
Sbjct: 183 GEVYMRHHDFDALNARQTANGGKTFANPRNAAAGSLRQLD-AEITRARPLAFFAYAWGAL 241

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S   A  Q+  ++++   GF  N      +    ++++Y +++  R+TL YDIDG+VYKV
Sbjct: 242 SAPLADTQFHAIERLSAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYKV 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ +LG R+ +PRW I+HKF  + A TRL DI IQ+GRTG L+PVARL+PV +GG 
Sbjct: 302 NDLALQDRLGFRSTTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLKPVTVGGV 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNEDYIKGLD+ G  +R G+DIRVGD V V RAG+VIPK+ D+ + +R  D++
Sbjct: 362 VVSNATLHNEDYIKGLDSKGASIRDGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPEDSE 421

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + +P+ CP C S  +R+         A  RCTGGL C AQ +E+LKHFVSR AF+I+GL
Sbjct: 422 AYVYPTTCPECGSDAIREEGD------AVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGL 475

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++ F+        I  PADIFTL+ R  +   +++N  G+G+ S   L+ +I  +R
Sbjct: 476 GAKQVEQFYADG----WIAEPADIFTLKARYGSGMQQLKNREGWGEKSADKLFQAIEDKR 531

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I L R IF+LGIRHVG   +  +A++Y S+  F   + +  + +   W  LI V  VG 
Sbjct: 532 KIPLSRLIFALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGDGPAWDDLIGVDGVGQ 591

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++AQ++V  +       +++ L+ E+S           S +  K +VFTGTL+K+ R +A
Sbjct: 592 VMAQSLVSTFAQEAERASIDRLVTELSVQDVARPDTEGSPVAGKTVVFTGTLEKMTRAEA 651

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +    +LGA VS  +S KTDI++ G   GSK +KA  LG++ ++E+ +L L+
Sbjct: 652 KARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALI 703


>gi|312114833|ref|YP_004012429.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100]
 gi|311219962|gb|ADP71330.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100]
          Length = 777

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 306/739 (41%), Positives = 447/739 (60%), Gaps = 51/739 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E LS E A+ E  +L  EI+ HD   YQ + P I D+EYD L+ R +A+  AFP L    
Sbjct: 57  EHLSAEDAKDEHDALAAEIARHD-LLYQDAAPEISDAEYDRLRLRLNALEAAFPSLI--- 112

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P  P   +G   +    KV H++  LSL  +++ ED+  F  R+ RF +   D ++  T
Sbjct: 113 TPESPSQTVGATPSEKFAKVRHTVRMLSLGNVFSDEDVADFAGRVRRFLKFAPDEALDVT 172

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            E KIDG  +++RYE G+   AA RGDG  GEDV+A +R I  IP+V+  N +P + EVR
Sbjct: 173 AEMKIDGLSVSLRYENGRLAVAATRGDGSEGEDVTANVRTIADIPQVIRANDVPAVFEVR 232

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF------VH 241
           GEVY+S  DF ALN+  +  G + +ANPRNAA+G LR+L+P     R L FF      V 
Sbjct: 233 GEVYMSHADFQALNERQVGKGGRMFANPRNAAAGSLRQLDPAITAARPLRFFAWGWGEVR 292

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G G+ S + A   + +LQ +   GFP+   V    +   +++ Y  ++  R++L YDIDG
Sbjct: 293 GWGEASALPADTNFGVLQAIHGWGFPLPP-VEICRSVEEMLAVYRAIEMKRASLGYDIDG 351

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKV+   LQ++LG  +R+PRW  +HKF+ ++A+T L  IDIQ+GRTG LTPVA+L PV
Sbjct: 352 VVYKVNRLDLQERLGFISRTPRWATAHKFSAEKATTVLNGIDIQVGRTGALTPVAKLAPV 411

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG ++ NATLHNED I+            +D+R+GD V+V+RAG+VIP+++  ++ +R
Sbjct: 412 TVGGVVVQNATLHNEDEIRR-----------KDVRIGDTVIVQRAGDVIPQILGPVLEQR 460

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             DA  F FP+ CP+C S  VR+ +PKTGK+ A  RCTGGL C+AQ +ERL+HFVSR AF
Sbjct: 461 PADAVEFVFPTLCPVCGSHAVRETHPKTGKVDAVRRCTGGLICAAQAVERLRHFVSRHAF 520

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG++ +  FF        I+ PADIFT+  R      K+    G+G  S  NL+ +
Sbjct: 521 DIEGLGEKNIQAFFDEG----RIKAPADIFTMAARDGVDLPKLSEKEGWGAQSAANLFAA 576

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF--------AQEINN-----II 588
           I  RR ISLERFIF+LGIRHVG   A+ LAK + S            A E+       + 
Sbjct: 577 IEARRTISLERFIFALGIRHVGETTAKLLAKTFGSLDALRAAMAEPDAAELRPGDELLLE 636

Query: 589 AHNNDDWLSLIRVPL---------VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
           + + +D  SL R  +         +GD++AQ+IV+F+  P N  AV+AL +E++    + 
Sbjct: 637 SASGEDKRSLHRAIILAKLNEIDGIGDVVAQSIVDFFDEPHNREAVDALRRELTIEAYKP 696

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           ++ VSS +    +VFTG L++  R +A+    + GA V+  +S+ T  ++ G   GSKL+
Sbjct: 697 DQ-VSSLLAGATVVFTGKLERFTRDEAKAQAERFGAKVAGSVSKATTYLVAGPGAGSKLK 755

Query: 700 KAQQLGVKIMNEEQFLFLL 718
           KA+ LGVK+M E+++L ++
Sbjct: 756 KAEDLGVKVMTEDEWLEMI 774


>gi|254510866|ref|ZP_05122933.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11]
 gi|221534577|gb|EEE37565.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11]
          Length = 750

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 301/752 (40%), Positives = 440/752 (58%), Gaps = 59/752 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+ E A++EL+ L  E+   +  Y+    P + D +YDALKRR   I   FPDL R++ P
Sbjct: 10  LTEEDAQQELARLAAELLRANQLYHAEDAPELSDGDYDALKRRNAEIEARFPDLKRTDSP 69

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++G   +    KV+H++  +SL   ++  D+  F   I ++     D  + FT E
Sbjct: 70  S---EQVGARPSDGFAKVSHAMRMMSLGNAFDDTDIVDFDRSIRKYLGLTGDAPLAFTAE 126

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYE+G+ V AA RGDG  GE+V+A  R +  IP  ++   P+++EVRGEV
Sbjct: 127 PKIDGLSLSLRYEQGELVQAATRGDGEVGENVTANARTVADIPHRIA-GAPDVLEVRGEV 185

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEI 249
           Y+S  DF ALN      G K +ANPRNAA+G LR+L+ ++ITR   L FF +  G+ S  
Sbjct: 186 YMSHQDFEALNTRQAETGGKTFANPRNAAAGSLRQLD-SEITRARPLKFFAYAWGELSAP 244

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A+ Q   +Q+++  GF +N   R   T   ++ +Y  +++ R+TL YDIDG+VYKVD+ 
Sbjct: 245 LAETQMGAIQRLKAFGFQINALTRLCATPSQMLDHYRRIEAQRATLGYDIDGVVYKVDDL 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG +++
Sbjct: 305 GLQSRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLHPVTVGGVVVS 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNEDYI G DA G V+R G+DIRVGD V V RAG+VIPK+ D+ +++R  DAQP++
Sbjct: 365 NATLHNEDYIAGRDAKGGVIRDGKDIRVGDWVQVYRAGDVIPKLADVDLSKRPADAQPYA 424

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP C S   R+         A  RCTGGL C AQ +E+LKHFVSR AF+IEGLG +
Sbjct: 425 FPTTCPECGSDATREEGD------AVRRCTGGLICPAQAVEKLKHFVSRKAFDIEGLGAK 478

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           Q++ F+   DP   I  PADIFTLQ R   +  +++N  G+GD S  NL+++I  +R I 
Sbjct: 479 QIEMFYG--DPVLPINTPADIFTLQERDTKALARLKNRDGWGDTSANNLFEAIEDKRKIP 536

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQ-------------------NFAQEINNIIAH 590
             R +F+LGIRHVG   A+ LA +Y  +                    + A+E+  I A 
Sbjct: 537 FARLLFALGIRHVGEVGAKDLALFYRDWDVMAASIDTARPAALAQRAADEAEEVERIAAA 596

Query: 591 NN------------------------DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           +                           W  LI +  +G  +  ++ + + N     A +
Sbjct: 597 DEGRRAKLKDARDSVIAGREVPADAASAWADLIGIDGIGATLGLSLSDAFANADERAAFD 656

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
            L K +   +        S +  K +VFTGTL+K+ R +A+     LGA VS  +S+KTD
Sbjct: 657 TLRKHLE-IVAPDAPASDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSQKTD 715

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ G   GSK +KA  LG++ ++E+ +L L+
Sbjct: 716 LLVAGPGAGSKAKKAADLGIRTLDEDGWLQLI 747


>gi|254476645|ref|ZP_05090031.1| DNA ligase, NAD-dependent [Ruegeria sp. R11]
 gi|214030888|gb|EEB71723.1| DNA ligase, NAD-dependent [Ruegeria sp. R11]
          Length = 783

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 303/758 (39%), Positives = 452/758 (59%), Gaps = 65/758 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++L++E+AR     L+ E+   D  Y+Q   P I D++YDA KR+  A+A AFP+LA   
Sbjct: 41  QSLTLEEARPLFEQLQDELRAADLAYHQKDAPEISDADYDAKKRQYRALAEAFPNLAAEA 100

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
                L+ +G  +     K+TH+   +SL   ++ +D+  F   + ++        + +T
Sbjct: 101 TE---LDTVGAPVASGFGKITHAQRMMSLGNAFDDDDVADFDKGLRKYLGLSASEPLAYT 157

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            EPKIDG  +++RYE G  V+AA RGDG  GE+V+A  R I  IP+ +  N P I+EVRG
Sbjct: 158 AEPKIDGLSLSLRYENGTLVHAATRGDGAVGENVTANARTIDDIPQEIP-NAPAILEVRG 216

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTS 247
           EVY+S  DF ALN+   A G K +ANPRNAA+G LR+L+  +ITR   L FF +  G+ S
Sbjct: 217 EVYMSHEDFAALNERHEARGGKTFANPRNAAAGSLRQLD-AEITRARPLRFFAYSWGELS 275

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E   + Q++ L ++R +GF  N   R   +   ++++Y +++  R+TL YDIDG+VYKVD
Sbjct: 276 EPLGETQFDALARLRKMGFQTNPLTRHCTSVADLIAHYRQIEEQRATLGYDIDGVVYKVD 335

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+PV +GG +
Sbjct: 336 ALALQDRLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQPVTVGGVV 395

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ +++R   A+ 
Sbjct: 396 VSNATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLSKRPDGAEA 455

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           ++FP+ CP C S  VR+         A  RCTGGL C AQ +E+LKHFVSR AF+I+GLG
Sbjct: 456 YAFPTTCPQCDSPAVREEGD------AVRRCTGGLICPAQAVEKLKHFVSRKAFDIDGLG 509

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +Q++ F+  E    +I+ PADIF+LQ R   + TK++N  G+G+ S  NL+ +I  +R 
Sbjct: 510 AKQIEMFYGDE--TLAIKTPADIFSLQARDAQNLTKLKNRDGWGETSAANLFAAIEDKRE 567

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN----IIAHNNDD--------- 594
           I+L R IF LGIRHVG   AR LA +Y+ +   A+ ++      +AH   D         
Sbjct: 568 IALARLIFGLGIRHVGEVGARDLALHYMDWDAMAEAVDTARPAALAHRAADEAEDAERIA 627

Query: 595 ------------------------------WLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                                         W  L  +  +G  +  ++ + + N     A
Sbjct: 628 AAQANRRARIKEVRDSAIAQCDVPPAARAAWEDLTGIDGIGATLGLSLSDAFANADERAA 687

Query: 625 VEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
            +AL   L  V P   + +    S +  K +VFTGTL+K+ R +A+     LGA V+  +
Sbjct: 688 FDALRAYLTIVPPEAPQKD----SPVAGKTVVFTGTLEKMTRAEAKARAEGLGAKVAGSV 743

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S+KTDI++ G   GSK +KA+ LG++I++E+ +L L++
Sbjct: 744 SKKTDILVAGPGAGSKEQKARDLGIRILDEDGWLTLIE 781


>gi|163747147|ref|ZP_02154503.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45]
 gi|161379708|gb|EDQ04121.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45]
          Length = 685

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/687 (42%), Positives = 422/687 (61%), Gaps = 17/687 (2%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+    P I D+EYDALKRR  AI   +PDL R + P     ++G  +     KV H++ 
Sbjct: 12  YHTEDAPEISDAEYDALKRRNAAIEARYPDLKRDDSPT---EQVGAPVAEGFGKVRHAVS 68

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL   ++ E++  F  RI ++   + D  + +T EPKIDG  +++RYE G  V AA R
Sbjct: 69  MLSLANAFDAEEVTDFDARIRKYLGVEADAPLAYTAEPKIDGLSLSLRYENGLLVQAATR 128

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+V+A  R I  IP  +    P+++EVRGEVY+S  DF ALN+     G K +A
Sbjct: 129 GDGAVGENVTANARTIQDIPHQID-EAPDLLEVRGEVYMSHADFAALNERQAERGGKTFA 187

Query: 215 NPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           NPRNAA+G LR+L+  +ITR   L FF +  G  S   A+ Q   + ++  LGF  N   
Sbjct: 188 NPRNAAAGSLRQLD-AEITRARPLRFFAYAWGALSAPLAETQKGAIDRLAKLGFVTNPLT 246

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
              +    +V++Y ++++ R+TL YDIDG+VYKVD+ +LQ++LG R+ +PRW I+HKFA 
Sbjct: 247 ALCDGPSDMVAHYAKIEAQRATLGYDIDGVVYKVDDLALQERLGFRSTTPRWAIAHKFAA 306

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           + A TRL  IDIQ+GRTG L+PVARL+PV +GG +++NATLHNEDYIKGLD+ G  +RGG
Sbjct: 307 ELAWTRLEGIDIQVGRTGALSPVARLQPVTVGGVVVSNATLHNEDYIKGLDSKGAEIRGG 366

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           +DIRVGD V + RAG+VIPKV D+ +++R  DA PF FPS CP C S  +R+        
Sbjct: 367 KDIRVGDWVQIYRAGDVIPKVADVDLSKRPKDAAPFVFPSVCPECGSDAIREPGD----- 421

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
            A  RCTGGL C AQ +E+LKHFV+R AF+I+GLG +Q++ F+        I  PADIFT
Sbjct: 422 -AVRRCTGGLICPAQAVEKLKHFVARGAFDIDGLGAKQVEQFYHDG----WIAEPADIFT 476

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L+ R      +++N  G+G  S  NL+ +I  +R I + R IF+LGIRHVG   +  +A 
Sbjct: 477 LKERFGNGVQQLKNREGWGPKSADNLFQAIKDKRKIPMSRLIFALGIRHVGDAASNLIAL 536

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
           +Y  + +F   +          W  LI V  VG ++A ++V  +       +++ L+  +
Sbjct: 537 HYGDWDSFETAMAEARGLEGPAWDDLIAVDGVGSVMAGSLVSAFAQEAERASIDRLVAHL 596

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +           S +  K +VFTGTL+K+ R +A+    +LGA VS  +S KTDI++ G 
Sbjct: 597 TVVPTERPDTEGSPVAGKTVVFTGTLEKMSRAEAKARAERLGAKVSGSVSAKTDILVAGP 656

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GSK +KA  LG++ ++E+ +L L++
Sbjct: 657 GAGSKAKKAADLGIETLDEDGWLALIE 683


>gi|84686905|ref|ZP_01014789.1| DNA ligase, NAD-dependent [Maritimibacter alkaliphilus HTCC2654]
 gi|84665102|gb|EAQ11582.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2654]
          Length = 710

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 296/720 (41%), Positives = 431/720 (59%), Gaps = 15/720 (2%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M       +E L    AR EL+ L   ++  +  Y+    P + D+ YDA KRR   I  
Sbjct: 1   MTGHSETAVEKLDEAGARAELARLADLLASANTAYHTEDAPEMSDAAYDAAKRRNAEIEA 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP+L R + P    +++G        KV H +  LSL   ++ + +  F  ++  F   
Sbjct: 61  RFPELKRDDSPT---DQVGAAPAEGFSKVRHRVRMLSLANAFDDDHVIDFDRQVRAFLGF 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             +  + FT EPKIDG  +++RYE G+ + AA RGDG  GE+V+A  R I  IP+ LS  
Sbjct: 118 SAEEPLAFTAEPKIDGLSLSLRYENGELMQAATRGDGGEGENVTANARTIDDIPQRLS-G 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238
            P+++EVRGEVY+S +DF  LN+   A G K +ANPRNAA+G LR+L+ + IT  R L F
Sbjct: 177 APDVLEVRGEVYMSHDDFARLNESQSAKGGKTFANPRNAAAGSLRQLD-SRITEARPLRF 235

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           + +  G+ S+  A  Q   ++K+  LGF  N   +   T   +  +Y+ ++  R+TL YD
Sbjct: 236 YAYAWGELSDPLADTQMGAIEKLADLGFSTNPLTKIVETPEAMFDHYHAIEEQRATLGYD 295

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV++ +LQK+LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL
Sbjct: 296 IDGVVYKVNDLALQKRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARL 355

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG +++NATLHNEDYI G D+ G  +RGG+DIRVGD V V RAG+VIPKV D+ +
Sbjct: 356 SPVTVGGVVVSNATLHNEDYIAGRDSKGGDIRGGKDIRVGDWVQVYRAGDVIPKVADVDL 415

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R  DA+P+ FP  CP C S  +R+         A  RCTGG+ C AQ +E+LKHFVSR
Sbjct: 416 TKRPDDAEPYVFPDTCPECGSEAIREEGD------AVRRCTGGMICPAQAVEKLKHFVSR 469

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            AF+IEGLG +Q++ F+  E     IR PADIFT  RR   +  K++N  G+G+ S   L
Sbjct: 470 SAFDIEGLGAKQVEAFYFDE--GLPIREPADIFTFARRDGAALAKLKNRDGWGEKSAAKL 527

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +++I +RR I L R IF+LGIRHVG   A  LA++Y  +  F   +          W  L
Sbjct: 528 FEAIEERRRIPLNRVIFALGIRHVGENSANLLARHYGDWPTFEAAMTGASPEGGAAWEEL 587

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           + +  VG+ +A ++V  +       +++ L+ E+        +   S +  K +VFTGTL
Sbjct: 588 LSIDGVGETMATSLVTTFHQEAERASIDRLVAELDIEPVEAPQTEGSPVAGKTVVFTGTL 647

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R +A+     LGA VS  +S KTD+++ G   GSK +KA +LG++ ++E+ +L L+
Sbjct: 648 EKMTRAEAKARAEALGAKVSGSVSAKTDLLVAGPGAGSKAKKAAELGIETIDEDGWLDLI 707


>gi|119386790|ref|YP_917845.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222]
 gi|166216224|sp|A1B9F5|DNLJ_PARDP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119377385|gb|ABL72149.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222]
          Length = 765

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 305/760 (40%), Positives = 444/760 (58%), Gaps = 63/760 (8%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L P+  L ++ A  E + L +E++  +  YYQ   P I D+EYDA KRR + I   FPDL
Sbjct: 22  LPPVSGLDVKAAEAEHARLSEEVAQANLAYYQEDAPFISDAEYDASKRRLEEIEARFPDL 81

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A S     P  ++G   +    KV H +P LSLE  ++  D+  F+ R+  F        
Sbjct: 82  AHS---GSPTAQVGAAPDTRFAKVPHRLPMLSLENGFSQGDVEAFVQRVRSFLNLASGAP 138

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
           +  T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I  IP  LS +  PE+
Sbjct: 139 LEVTAEPKIDGLSLSLRYEGGRLVQAATRGDGAVGENVTANARTIADIPGQLSGDGYPEV 198

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGE Y+S  DF  LN      GR  +ANPRNAA+G LR+L+P+    R L FF +  
Sbjct: 199 LEIRGECYMSHEDFEKLNQSE--TGRV-FANPRNAAAGSLRQLDPSVTAARPLRFFAYAW 255

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+ S  FA  Q E +++M+  GF  N   R   +   ++S + E++ +R+TL YDIDG+V
Sbjct: 256 GEVSASFAGTQMEAVRRMQAFGFQTNPLTRICASVSEMLSAWAEIEQMRATLGYDIDGVV 315

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV++ + Q +LG R+ +PRW ++HKF  ++A TRL  IDIQ+GRTG L+PVARL PV +
Sbjct: 316 YKVNDLAYQARLGMRSTTPRWALAHKFPAERAWTRLEAIDIQVGRTGALSPVARLHPVTV 375

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++NATLHNEDYI G  A G  +RGG+DIR+GD V V RAG+VIPKV D+ + +R  
Sbjct: 376 GGVVVSNATLHNEDYIAGRGADGSEIRGGKDIRIGDWVEVYRAGDVIPKVADVDLAKRPS 435

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +A+P++FP+ CP C S  +R+     G  V   RCTGGL C AQ +E+L+HFVSR AF+I
Sbjct: 436 EAEPYAFPTTCPECGSPAIRE----EGDSV--RRCTGGLICPAQAVEKLRHFVSRAAFDI 489

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSI 542
           EGLG + ++  F+       I  PADIFTLQ R      T+++N  G+G+ S  +L+ +I
Sbjct: 490 EGLGAKLVEELFRDG----WIAEPADIFTLQDRYGPGQLTQLKNREGWGEKSAASLFQAI 545

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN----IIAHN------- 591
            KRR I L R +F+LGIRHVG   A+ LA++Y S++     ++      +AH        
Sbjct: 546 EKRREIPLARLLFALGIRHVGEVAAQDLARHYGSWEALEIALDTARPAALAHRVAEDAAL 605

Query: 592 --------------------------------NDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
                                              W  LI    +G ++A ++ + + N 
Sbjct: 606 AEREAARAEGRRARPSEARAAALAQVDLSPEATAAWTGLIAADGIGPVLAMSLSDAFANE 665

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           R   A++ L+  ++  +    +   S I  K LVFTGTL+K+ R +A+     LGA V+ 
Sbjct: 666 RERAAIDRLVSFLT-VLPPEARATDSAIAGKTLVFTGTLEKMTRAEAKARAEALGAHVAG 724

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +S KTD++I G   GSK +KA +LG+K+++E+++L + Q
Sbjct: 725 SVSAKTDLLIAGPGAGSKAKKAAELGIKVIDEDEWLAIAQ 764


>gi|294677201|ref|YP_003577816.1| DNA ligase [Rhodobacter capsulatus SB 1003]
 gi|294476021|gb|ADE85409.1| DNA ligase (NAD(+)) [Rhodobacter capsulatus SB 1003]
          Length = 707

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 296/713 (41%), Positives = 433/713 (60%), Gaps = 21/713 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +++L+  +A  E+  L   I   +  Y+    P I D++YDALKRR  AI   FPDLAR+
Sbjct: 10  LDSLTRAEAEAEVPELVARIEAANHAYHTLDAPKISDADYDALKRRLAAIEARFPDLARA 69

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P     ++G  +     KV H I  LSLE  +   D+  F  R+  +     ++++  
Sbjct: 70  DSPT---MRVGAAVAEGFGKVAHEIRMLSLENAFLDADVADFDGRMRSYLGLGPESALPC 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE G  V AA RGDG  GE+V+   R I  IP+ L+   P ++EVR
Sbjct: 127 TAEPKIDGLSLSLRYEDGLLVQAATRGDGEVGENVTENARTIADIPQRLT-GAPAVLEVR 185

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+S  DF ALN      G K +ANPRNAA+G +R+L+     +R L FF +  G  S
Sbjct: 186 GEVYMSHADFAALNARQAERGDKTFANPRNAAAGSVRQLDARITASRPLKFFAYSWGVLS 245

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E  +  Q   +++++ LGF  N   R       ++++Y  +++ R+TL YDIDG+VYKV+
Sbjct: 246 EPLSDTQLGAIERLKALGFQTNPLTRLCADTAEMLAHYRAIEAQRATLGYDIDGVVYKVN 305

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG R+ +PRW I+HKF  + A TRL  I+IQ+GRTG L+PVARL PV +GG +
Sbjct: 306 DLALQARLGFRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLAPVTVGGVV 365

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHNEDYI GL + G+V+R G+DIR GD V V RAG+VIPKV D+ ++ R P AQP
Sbjct: 366 VSNATLHNEDYIAGLSSKGEVIRDGKDIREGDWVQVYRAGDVIPKVADVDLSRRDPAAQP 425

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S  +R+         A  RCTGGL C AQ +E+LKHFVSR AF+IEGLG
Sbjct: 426 FVFPHLCPECGSEALREEGD------AVRRCTGGLICPAQAVEKLKHFVSRAAFDIEGLG 479

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +Q++ F+K       IR PA+IFTLQ R      +++N  G+G+ S  NL+ +I ++R 
Sbjct: 480 AKQVEAFYKDG----WIREPAEIFTLQARFGAGLQQLKNREGWGEKSAQNLFQAIEEKRK 535

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           I L R IF+LGIRHVG   A   A +YL+++ F   +   +   + +W  L+ +  VG+ 
Sbjct: 536 IPLARLIFALGIRHVGESSAALFATHYLTWERFEAAMRAAVP-GSAEWQELLSIDGVGET 594

Query: 608 IAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A ++   +       A++ L+    V P++ R      S +    +VFTGTL+++ R +
Sbjct: 595 LAASVTAAFHPGAERDAIDRLVTHLTVEPAVPRAS---DSPVAGLTVVFTGTLERMTRAE 651

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+     LGA V+  +S KTDI++ G   GSK +KA  LGV++++EE ++ L+
Sbjct: 652 AKARAEALGAKVAGSVSAKTDILVAGPGAGSKAKKAADLGVRVIDEEAWIRLI 704


>gi|260576789|ref|ZP_05844774.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2]
 gi|259021041|gb|EEW24352.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2]
          Length = 705

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 304/712 (42%), Positives = 432/712 (60%), Gaps = 18/712 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE L+  +A  E   L + ++  +  Y+Q   P + D+ YDA+KRR  AI   FP LA  
Sbjct: 7   IEQLTEAEAAVEWQELARAVAQANIDYHQNDAPKLTDATYDAMKRRLAAIEVLFPQLAT- 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P +K+G        KV H++  LSLE  ++  D+  F  R+ +F        + +
Sbjct: 66  ---DSPTSKVGAAPADGFAKVPHAVRMLSLENAFDDTDVTDFDDRVRKFLGHA--APLTY 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE G  V AA RGDG  GE+V+   R I  IP+ L+   P ++EVR
Sbjct: 121 TAEPKIDGLSLSLRYEAGVLVQAATRGDGEVGENVTDNARTISDIPQSLT-GAPAVLEVR 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+S  DF ALN    A G K +ANPRNAA+G LR+L+ +    R L FF +  G  S
Sbjct: 180 GEVYMSHADFAALNSRQAARGEKTFANPRNAAAGSLRQLDASITAARPLRFFAYAWGALS 239

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E  A  Q E + ++  LGF  N   R   +   +++ Y E+++ R++L YDIDG+VYKV+
Sbjct: 240 EPLAATQLEAIARLAALGFATNPLTRACTSPDDLLAVYREIEAQRASLGYDIDGVVYKVN 299

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG RA +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG +
Sbjct: 300 DLALQARLGFRAATPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVV 359

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           + NATLHNEDYI G D+ G  +R G+DIR+GD V V RAG+VIPK+ +I + +R    + 
Sbjct: 360 VANATLHNEDYIAGRDSKGNPIRDGKDIRIGDWVQVYRAGDVIPKINNIDLEKRPKTVET 419

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F+FP+ CP C S  +R+     G  V   RCTGGL C AQ +ERLKHFVSR AF+IEGLG
Sbjct: 420 FTFPTICPQCGSDAIRE----DGDSV--RRCTGGLICPAQAVERLKHFVSRAAFDIEGLG 473

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSINKRR 546
            +Q++ FF   DP   ++ PADIFTL  R   S   K++N  G+G+ S TNL+ +I+++R
Sbjct: 474 AKQIEAFFN--DPDLPLKTPADIFTLASRDAASPLKKLKNRDGWGEKSATNLFAAIDEKR 531

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I L R IF+LGIRHVG   A  LA +Y S+ NF   + +       DW  L  +  VG 
Sbjct: 532 SIPLHRLIFALGIRHVGESSAALLANHYGSWSNFEAAMTHAEIGQGADWADLTAIDGVGA 591

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A +++  +  P    A++AL+  ++           S +  K LVFTGTL+K+ R +A
Sbjct: 592 VLATSLITTFHQPAERAAIDALVAHLTVQDA-APVATDSPVAGKTLVFTGTLEKMSRAEA 650

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S KTD++I G   GSK + A+ LGV++++E  +L L+
Sbjct: 651 KARAESLGAKVAGSVSAKTDLVIAGPGAGSKAKAAEALGVQVIDEAAWLALI 702


>gi|255264005|ref|ZP_05343347.1| DNA ligase, NAD-dependent [Thalassiobium sp. R2A62]
 gi|255106340|gb|EET49014.1| DNA ligase, NAD-dependent [Thalassiobium sp. R2A62]
          Length = 711

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 295/716 (41%), Positives = 435/716 (60%), Gaps = 24/716 (3%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I ++ L+   A  EL+ L   +   +D Y+    P + D+EYDALKRR  AI   FPDL 
Sbjct: 13  IDVDDLTRTAATDELTWLSYVLGQANDDYHGSDAPQMSDAEYDALKRRNMAIEARFPDLK 72

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R + P+   +++G        K+TH +  LSL   +  ED+ +F  R+ ++   +D  ++
Sbjct: 73  RGDSPS---DQVGAAPIDGFGKITHVVRMLSLGNAFTDEDVVEFDRRVRKYLGLED--AL 127

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE G  + AA RGDG  GEDV+A  R +  IP+ L  N P+++E
Sbjct: 128 AYTAEPKIDGLSLSLRYEGGVLIQAATRGDGAVGEDVTANARMVQDIPQTLK-NAPDVLE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244
           VRGEVY+S  DF  LN    A G K +ANPRNAA+G LR+LN  +IT  R L FF +  G
Sbjct: 187 VRGEVYMSHADFEDLNTRQEARGAKSFANPRNAAAGSLRQLN-AEITKDRPLRFFAYASG 245

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             S   A  Q   ++++  LGF  N   +  +    ++++Y  ++  R+TL YDIDG+VY
Sbjct: 246 DLSAPLADTQNAAIERLAALGFSTNPLTQLCDDPEAMIAHYRRIEEQRATLGYDIDGVVY 305

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++  LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL+PV +G
Sbjct: 306 KVNDLGLQRRLGFRSTTPRWAIAHKFPAELAWTTLEAIDIQVGRTGALSPVARLKPVTVG 365

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYIKGLD+ G  +R GRDI VGD V + RAG+VIPK+ D+ + +R   
Sbjct: 366 GVVVSNATLHNEDYIKGLDSKGAPIREGRDIWVGDWVQIYRAGDVIPKICDVDLAKRLAT 425

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           AQ + FP  CP C S  VR+         A  RC GG+ C AQ +E+LKHFVSR  F+I+
Sbjct: 426 AQAYEFPETCPECGSHAVREEGD------AVRRCVGGMICPAQAVEKLKHFVSRGGFDID 479

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +Q++ F         ++ PADIFTL+ R  +   +++N  G+GD S +NL+D+I+ 
Sbjct: 480 GLGAKQVEQFHSDA----WVKEPADIFTLRDRFGSGLQQLKNREGWGDKSASNLFDAIDD 535

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +R I L R IF+LGIRHVG   A  +A  Y ++  F   +   +    D W +LI +  V
Sbjct: 536 KRRIGLGRLIFALGIRHVGDASANLIANRYGTWSAFEGAMTAAVIGEGDAWETLIDIDGV 595

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           G ++A ++V   Q      +++ L+   +V  ++   +    S +  K +VFTG+L+K+ 
Sbjct: 596 GAVMAGSLVRAMQEEAERASIDRLVAHLDVQEAV---QVTSDSPVAGKTVVFTGSLEKMT 652

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+     LGA VS  +S KTD+++ G   GSK +KA  LGV+ ++E+ +L L+
Sbjct: 653 RAEAKARAESLGAKVSGSVSAKTDLLVAGPGAGSKAKKAADLGVETIDEDDWLALI 708


>gi|83951899|ref|ZP_00960631.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM]
 gi|83836905|gb|EAP76202.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM]
          Length = 748

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 299/732 (40%), Positives = 426/732 (58%), Gaps = 65/732 (8%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            Y+    P I D+EYDALK+R   I   FP+L R + P+    ++G   +    KV H I
Sbjct: 32  AYHGADAPEISDAEYDALKQRNAEIEARFPELKRDDSPS---EQVGAAPSEGFGKVAHEI 88

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             LSL   +   D+  F  RI ++       ++ +T EPKIDG  +++RYE+GK V AA 
Sbjct: 89  RMLSLGNAFADGDVADFDERIRKYLGLGSGAALAYTAEPKIDGLSLSLRYEQGKLVQAAT 148

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GE+V+A  R +  IP+ +S   PE++EVRGEVY+S  DF ALN    A G KP+
Sbjct: 149 RGDGAVGENVTANARTVEDIPQEIS-GAPEVLEVRGEVYMSHADFEALNARQEAAGAKPF 207

Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+P     R L FF +  G  S   A+ Q   + ++  LGFPVN   
Sbjct: 208 ANPRNAAAGSLRQLDPGVTAARPLKFFAYAWGALSAPLAETQMGAIARLGALGFPVNPLT 267

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R+  +   ++++Y E++  R+TL YDIDG+VYKVD+ +LQ +LG R+ +PRW I+HKF  
Sbjct: 268 RRCESVGEMIAHYREIEQGRATLGYDIDGVVYKVDDLALQARLGFRSTTPRWAIAHKFPA 327

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           + A TRL  IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G DA G  +RGG
Sbjct: 328 ELAWTRLEGIDIQVGRTGALSPVARLAPVTVGGVVVSNATLHNEDYIAGRDAKGGEIRGG 387

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           +DIRVGD V V RAG+VIPK+ D+ + +R   A+ F FP+ CP C S  +R+        
Sbjct: 388 KDIRVGDWVQVYRAGDVIPKIADVDLAKRPEGAERFDFPTRCPECGSEAIREEGD----- 442

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
            A  RC+GGL C AQ +E+LKHFVSR AF+IEGLG +Q++ F++       I+ PADIFT
Sbjct: 443 -AVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFYRD----GWIKAPADIFT 497

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           LQ R      +++N  G+G+ S  NL+ +I ++R I L + IF+LGIRH G   AR LA 
Sbjct: 498 LQERYGAGLQQLKNREGWGEKSANNLFAAIEEKRRIPLAKLIFALGIRHAGEVAARDLAL 557

Query: 573 YYLSYQNFAQEIN-------------------------------------------NIIA 589
           +Y  +Q  A+ I+                                           ++ A
Sbjct: 558 HYRDWQAMAEAIDLARPAARAHRAADEAEEAERQAAGAEGRRARVSETRAAAVADCDVPA 617

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSE 646
                W  LI V  +G ++  ++ + + N +   A++ L   L  V+P          S 
Sbjct: 618 EAAAAWADLIAVDGIGAVLGLSLSDAFANDQERAAIDTLVAGLDIVAPDA----PAADSP 673

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +VFTG+L+K+ R +A+     LGA VS  +S KTDI++ G   GSK  KA +LG+
Sbjct: 674 VAGKTVVFTGSLEKMTRAEAKARAESLGAKVSGSVSAKTDILVAGPGAGSKATKAAELGI 733

Query: 707 KIMNEEQFLFLL 718
           + ++E+ +L L+
Sbjct: 734 ETLDEDGWLALI 745


>gi|86138407|ref|ZP_01056981.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193]
 gi|85824932|gb|EAQ45133.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193]
          Length = 752

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 307/763 (40%), Positives = 448/763 (58%), Gaps = 65/763 (8%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK+ + +    LS EQA+ E   L+ +++  D  Y+Q   P + D+ YDA KRR   +A 
Sbjct: 1   MKQIEPLDPSGLSQEQAQAEFLELQTQLAAADQAYHQNDAPFLSDAAYDAAKRRYKVLAE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFP+L   +D    L+ +G  +     K+ H +P LSL   +   D+  F   I  +   
Sbjct: 61  AFPEL---KDIATQLDSVGAPVTSGFGKIQHVVPMLSLGNAFEDSDVADFDRSIRNYLGF 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                + FT EPKIDG  +++RYEKG  + AA RGDG +GE+V+A  R I  IP+ LS  
Sbjct: 118 GASQPLRFTAEPKIDGLSLSLRYEKGVLIQAATRGDGATGENVTANARTIADIPQQLS-G 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNF 238
            PE++EVRGEVY+S  DF ALN      G K +ANPRNAA+G LR+L+  +ITR   L F
Sbjct: 177 APEVLEVRGEVYMSHEDFAALNARHTERGGKTFANPRNAAAGSLRQLD-AEITRLRPLRF 235

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +  G  S   A+ Q   ++++  LGF  N   +   +   ++++Y ++++ R+TL YD
Sbjct: 236 FAYSWGDLSAPLAQTQTGAIERLHELGFQTNPLTQTCASVAEMIAHYRQIEAQRATLGYD 295

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD+ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL
Sbjct: 296 IDGVVYKVDDLALQGRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARL 355

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG +++NATLHNEDYI+G D  G+ +RGG++IR+GD V V RAG+VIPKV D+ +
Sbjct: 356 TPVTVGGVVVSNATLHNEDYIRGRDNKGEEIRGGKEIRIGDWVQVYRAGDVIPKVADVDL 415

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R+ D Q F FP  CP C S  VR+         A  RCTGG+ C AQ +E+LKHFVSR
Sbjct: 416 TKRNGDEQTFDFPETCPECGSPAVREEGD------AVRRCTGGIICPAQAIEKLKHFVSR 469

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            AF+IEGLG +QL+ F+   DP   IR P DI+TL++R     TK++N  G+GD S  NL
Sbjct: 470 KAFDIEGLGAKQLEMFYN--DPDLPIRTPVDIYTLEQRDLGQFTKLKNRPGWGDQSAANL 527

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN----NIIAHNNDD 594
           + +I ++RNISL R IF+LGIRHVG   A+ LA ++ S+++ A  ++      +AH   D
Sbjct: 528 FAAITEKRNISLGRMIFALGIRHVGEVAAKDLALHFGSWEDLASAVDAARSAALAHRAAD 587

Query: 595 ---------------------------------------WLSLIRVPLVGDIIAQAIVEF 615
                                                  W  LI +  +G  +  ++ + 
Sbjct: 588 LAEDQERERASSEGRRAKIKETREAALSVLELHRTAREAWEDLIGIDGIGATVGLSLSDA 647

Query: 616 YQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             N +    ++ L+ ++   +P+    E    S +    +VFTG L+K+ R +A+     
Sbjct: 648 LANMQERAVIDDLVAQLNISAPAAPSQE----SPVAGLTVVFTGKLEKMTRDEAKARAES 703

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           LGA VS  +S+KTDI++ G   GSK +KA +LG++I++E+ +L
Sbjct: 704 LGAKVSGSVSKKTDILVAGPGAGSKEKKALELGIRILDEDGWL 746


>gi|114767408|ref|ZP_01446210.1| DNA ligase, NAD-dependent [Pelagibaca bermudensis HTCC2601]
 gi|114540493|gb|EAU43572.1| DNA ligase, NAD-dependent [Roseovarius sp. HTCC2601]
          Length = 757

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 306/758 (40%), Positives = 452/758 (59%), Gaps = 61/758 (8%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +EALS +QAR EL  L   ++  +  Y+    P I D++YDALKRR  AI   FP+L 
Sbjct: 13  IDVEALSEDQARAELERLAGLLAQANLAYHTEDAPEISDADYDALKRRNVAIEERFPELK 72

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R + P+    ++G  +     K+ H+   +SL   ++ +++R F   I R+    +D  +
Sbjct: 73  REDSPS---EQVGAALAEGFGKIRHAQRMMSLSNAFDDDEVRDFDRGIRRYLGLAEDAPL 129

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G  + AA RGDG +GE+V+A  R I  IP+ L    PE++E
Sbjct: 130 PFTAEPKIDGLSLSLRYENGALIQAATRGDGATGENVTANARTIDDIPQQLE-GAPELLE 188

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLG 244
           VRGEVY+S  DF ALN+   A G KP+ANPRNAA+G LR+L+P +ITR   L FF +  G
Sbjct: 189 VRGEVYMSHADFEALNERQEARGGKPFANPRNAAAGSLRQLDP-EITRARPLKFFAYAWG 247

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S   A+ Q + ++++  LGF  N   R  +    ++ +Y +++  R+TL YDIDG+VY
Sbjct: 248 ELSAPLAETQMDAIERLAQLGFQTNPLTRLCDGPQEMLDHYAQIEEQRATLGYDIDGVVY 307

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +G
Sbjct: 308 KVNDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVG 367

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYI G DASG  +R G+DIRVGD V V RAG+VIPK+ D+ +++R   
Sbjct: 368 GVVVSNATLHNEDYIAGRDASGNPIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSKRPDG 427

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P++FP  CP C S  +R+         A  RC+GGL C AQ +E++KHFVSR AF+IE
Sbjct: 428 AEPYAFPETCPECGSEAIREEGD------AVRRCSGGLICPAQAVEKMKHFVSRSAFDIE 481

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +Q++ F++       I  PA+IFTL+ R  +   +++N  G+G+ S  NL+D+I++
Sbjct: 482 GLGAKQVEQFYRD----GWISEPAEIFTLRERYGSGLQQLKNREGWGEKSANNLFDAIDE 537

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-------------------AQEIN 585
           +R I L R +FSLGIRHVG  +A  LA++YLS+                      A E  
Sbjct: 538 KRKIELGRVLFSLGIRHVGEVVANDLARHYLSWSAMIAAIDAARPAAERYRRAEQAVEAE 597

Query: 586 NIIAHNND-------------------------DWLSLIRVPLVGDIIAQAIVEFYQNPR 620
            + A +                            W  L+ V  +G  +A ++V     P 
Sbjct: 598 RVAAKSEGRRARLKEIRDAAWAEDPAVSTEARAAWDDLVGVDGIGQTVAVSLVTSMGQPT 657

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
              +++ L+ ++            S +  K +VFTG+L+K+ R +A+     LGA VS  
Sbjct: 658 ERASIDRLVAQLDIQDAERPATDGSPVAGKTVVFTGSLEKMTRAEAKARAEALGAKVSGS 717

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S+KTDI++ G   GSK  KA++LGV++M+E+ +L L+
Sbjct: 718 VSKKTDIVVAGPGAGSKEAKARELGVELMDEDAWLALI 755


>gi|259416760|ref|ZP_05740680.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B]
 gi|259348199|gb|EEW59976.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B]
          Length = 739

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 301/754 (39%), Positives = 437/754 (57%), Gaps = 61/754 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++  ARKE  +L+ +I   D  Y+Q   P + D+EYD LKRR  A+A AFP+LA   + 
Sbjct: 1   MNVTDARKEFEALQTKIEAADLDYHQKDAPTLSDAEYDRLKRRYLALAEAFPELA---EE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
              +  +G        K+ H++  +SL   +  +D+  F   + R+     D  + FT E
Sbjct: 58  GTRVESVGAPAASGFGKIAHAVRMMSLGNAFEDQDVEDFAAGLRRYLGLSSDAPLAFTAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYE G  V AA RGDG  GE+V+   R I  IP+ ++   P ++EVRGEV
Sbjct: 118 PKIDGLSLSLRYENGTLVQAATRGDGAVGENVTENARTIEDIPQQIT-GAPAVLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEI 249
           Y+S  DF ALN      G K +ANPRNAA+G LR+L+  +ITR   L FF +  G+ SE 
Sbjct: 177 YMSHADFEALNARHAETGGKIFANPRNAAAGSLRQLD-AEITRARPLRFFAYSWGELSEP 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A+ Q + +++ + LGF  N   R   T   ++++Y+ ++  R+ L YDIDG+VYKV++ 
Sbjct: 236 LAETQIDAIERFKSLGFQTNPLTRCCQTIAELLTHYHSIEEQRADLGYDIDGVVYKVNDL 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+PV +GG +++
Sbjct: 296 ALQERLGFRSTTPRWAIAHKFPAELAWTRLDGIDIQVGRTGALSPVARLQPVTVGGVVVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNEDYI GLD+ G  +R G+DIRVGD V + RAG+VIPKV D+ +N R   A+ ++
Sbjct: 356 NATLHNEDYIAGLDSKGATIRDGKDIRVGDWVQIYRAGDVIPKVADVDLNRRPDGAEVYA 415

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP C S  VR+         A  RC+GGL C AQ +E+LKHFVSR AF+IEGLG +
Sbjct: 416 FPTHCPRCNSPAVREEGD------AVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAK 469

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           Q++ F         I+ PADIF L+ R  +   +++N  G+GD S T L+ +I+ +R I 
Sbjct: 470 QVEQFHSDG----WIKEPADIFELKERYGSGMQQLKNREGWGDKSATALFAAIDDKRRIE 525

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN----NIIAHNNDD----------- 594
             R IF LGIRHVG   A+ LA ++ ++   A+  +      +AH   D           
Sbjct: 526 FARLIFGLGIRHVGEVAAKDLALHFRTWAVLAEAADLARPAALAHRAADEAELLERQVAQ 585

Query: 595 ----------------------------WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
                                       W  LI V  +G  +A ++ + + NP    A +
Sbjct: 586 AEERRARISEVRKAAIAACEVAPDAQAAWDDLISVDGLGPTVALSLSDAFANPEERAAFD 645

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
            L+  +   I        S +  K +VFTGTL+K+ R +A+     LGA VS  +S+KTD
Sbjct: 646 RLIAHLE-VIEPDAPTEDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTD 704

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           I++ G   GSK  KA +LGV+ M+E+Q+L L+ Q
Sbjct: 705 ILVAGPGAGSKATKAAELGVRTMDEDQWLDLIGQ 738


>gi|260426307|ref|ZP_05780286.1| DNA ligase, NAD-dependent [Citreicella sp. SE45]
 gi|260420799|gb|EEX14050.1| DNA ligase, NAD-dependent [Citreicella sp. SE45]
          Length = 754

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 310/760 (40%), Positives = 451/760 (59%), Gaps = 64/760 (8%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +EAL+  QAR EL+ L + ++  +  Y+    P I D++YDALK R  AI   FP+L 
Sbjct: 9   IEVEALTETQARDELARLAEVLAQANRAYHTEDAPEISDADYDALKLRNIAIEERFPELK 68

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R + P+    ++G  +     KV HS   +SL   +  +++  F   I R+    DD  +
Sbjct: 69  REDSPS---EQVGAPLAEGFAKVRHSQRMMSLANAFADDEVTDFDRGIRRYLGLADDARL 125

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I  IP  L    PE++E
Sbjct: 126 PFTAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDDIPATLE-GAPEVLE 184

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLG 244
           VRGEVY+S  DF ALN+   A G K +ANPRNAA+G LR+L+   ITR   L FF +  G
Sbjct: 185 VRGEVYMSHEDFAALNERQEARGGKRFANPRNAAAGSLRQLDAA-ITRERPLRFFAYAWG 243

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + SE  A  Q   ++++  LGF  N   R  +    ++++Y ++++ R+TL YDIDG+VY
Sbjct: 244 EVSEPLATTQMGAIERLEALGFQTNPLTRLCDGPQEMLAHYAQIEAQRATLGYDIDGVVY 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+ +LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +G
Sbjct: 304 KVDDLALQQRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVG 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYI G DASG  +R G+DIRVGD V V RAG+VIPKV D+ +++R  +
Sbjct: 364 GVVVSNATLHNEDYIAGRDASGNPIRDGKDIRVGDWVQVYRAGDVIPKVADVDLDKRPEE 423

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P++FP  CP C S  +R+         A  RCTGGL C AQ +E+LKHFVSR AF+IE
Sbjct: 424 AEPYAFPQTCPECGSEAIREEGD------AVRRCTGGLVCPAQAVEKLKHFVSRAAFDIE 477

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +Q++ F +       I  PA+IFTL+ R  +   +++N  G+G+ S  NL+D+I++
Sbjct: 478 GLGAKQVEQFHRD----GWISEPAEIFTLRTRYGSGIQQLKNREGWGEKSAQNLFDAIDE 533

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN------------------ 586
           RR I L R IFSLGIRHVG  +A  LA++Y S+    + ++                   
Sbjct: 534 RRTIGLGRVIFSLGIRHVGEVVANDLARHYASWDKLIEAVDAARPAAERYRQAETAVEAE 593

Query: 587 --------------------------IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
                                     + A     W  L+ +  +G  +A ++V       
Sbjct: 594 RKTAAAEGRRARLKETRDAAWEAEPPVSAGARAAWEDLVGIDGIGQTVAVSLVTSLGQTT 653

Query: 621 NICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
              +V+ L+ E+  +I   E+ ++  S +  K +VFTG L+K+ R +A+     LGA VS
Sbjct: 654 ERASVDRLIAELR-TIEAPERPLTDGSPVAGKTVVFTGALEKMTRAEAKARAEALGAKVS 712

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +S+KTDI++ G   GSK  KA++LG+++M+E+ +L L+
Sbjct: 713 GSVSKKTDIVVAGPGAGSKEAKARELGIELMDEDAWLALI 752


>gi|294085891|ref|YP_003552651.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292665466|gb|ADE40567.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 696

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 300/710 (42%), Positives = 438/710 (61%), Gaps = 32/710 (4%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S + A +EL+ L + I+YHD  Y+    P I D++YD L  R +A+  +FP+L R   P
Sbjct: 11  MSADDAAQELAYLAERIAYHDRKYHGEDAPDISDADYDMLVARNNALEASFPELIR---P 67

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G  ++ S  K+ H+ P LSL   ++ ED+  F+TRI +F    + + I FT E
Sbjct: 68  DSPSQRVGTMVSGSFGKIRHAQPMLSLSNGFSAEDIADFVTRIRKFLSLAETDDIAFTAE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYEKG  V AA RGDG  GEDV+A IR +  IP+ L   +P+I EVRGEV
Sbjct: 128 PKIDGLSLSLRYEKGHLVQAATRGDGSEGEDVTANIRTVDAIPKTLPDTVPDIFEVRGEV 187

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ + DFLALN +    G K +ANPRNAA+G LR+ + +   +R L FF + +G+ S   
Sbjct: 188 YMDRKDFLALNADQERKGGKIFANPRNAAAGSLRQKDVSITGSRNLAFFAYSMGEASAPV 247

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A    + L  +R  GF VN+  R   +   +++ Y+ + S R++L YDIDG+VYKVD   
Sbjct: 248 AATHTDFLAALRDFGFSVNDLSRHCLSLDDMLATYDAIGSQRASLDYDIDGVVYKVDRHD 307

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG+ AR+PRW ++HKF  +QA T ++ IDIQ+GRTG LTPVARL PV +GG +++N
Sbjct: 308 YQERLGQVARAPRWALAHKFPAEQAETTIIKIDIQVGRTGALTPVARLTPVTVGGVVVSN 367

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED I             +DIR+GD V+++RAG+VIP+VV ++  +R  D Q F+F
Sbjct: 368 ATLHNEDEI-----------ARKDIRIGDHVIIQRAGDVIPQVVRVLDEKRPDDVQIFTF 416

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S  +R      G+ V   RCTGGLAC AQ +E+LKHFVSRDAF+IEGLG +Q
Sbjct: 417 PDRCPVCDSDAIR----PEGEAV--RRCTGGLACEAQLVEQLKHFVSRDAFDIEGLGARQ 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F +       ++ PADIF L+ R+     K+  + G+G  S+ NL+ SIN RR I L
Sbjct: 471 IEQFLE----LGWVKTPADIFRLETRRD----KLATLDGYGAKSLDNLFASINARRTIGL 522

Query: 551 ERFIFSLGIRHVGAEIARSLAKYY--LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           ERFI++LGIR VG   +R LA +Y  L     A +  N  + +     +L+ +  +GD +
Sbjct: 523 ERFIYALGIRQVGQATSRLLALHYGDLDMMMSALDPENTESEHEIAIAALVDIDQIGDAM 582

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A  I  F+ +  +   V  L  E+S  +     +  S +  K +VFTGTL ++ R +A+ 
Sbjct: 583 AADICRFFGDTAHRNIVNDLASELS-ILPPERPSEDSAVSGKTVVFTGTLARMSRAEAKA 641

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               LGA VS  +S KTD +I G + GSK  KA +LGV +++E+++  L+
Sbjct: 642 KAEALGAKVSGSVSAKTDYLIAGADAGSKARKAAELGVTVLSEDEWRALI 691


>gi|163760776|ref|ZP_02167856.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43]
 gi|162282098|gb|EDQ32389.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43]
          Length = 739

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 298/716 (41%), Positives = 440/716 (61%), Gaps = 25/716 (3%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIEALS  +A+ EL  L  EI+ HD+ Y++   PI+ D+EYDA KRR  AI   FP L  
Sbjct: 43  PIEALSEAEAKAELDRLAAEIARHDEAYHRKDAPIVSDAEYDAFKRRNLAIEERFPHLRL 102

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           ++ P+    K+G  +     K+TH +  LSLE  ++ ED R F+ R+ RF      + + 
Sbjct: 103 ADSPS---LKVGAPVAEGFGKITHKVAMLSLENAFSDEDARDFVNRVKRFLNLTPFDELA 159

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIE 186
            T EPKIDG  +++RYE G  V AA RGDG +GE+V+A  R I  IP  L+  ++PE+IE
Sbjct: 160 LTAEPKIDGLSLSLRYENGTLVSAATRGDGATGENVTANARTISDIPHQLAGEDVPEVIE 219

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY++K DF+ALN    A G++ Y NPRN A+G LR+L+P     R L FF +  G+
Sbjct: 220 VRGEVYMTKADFMALNARQAAAGKQTYVNPRNTAAGSLRQLDPKITAERPLRFFAYAWGE 279

Query: 246 T-SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
               +    Q EM+      GF VN  + +  +   ++++Y  +++ R+ LPYDIDG+VY
Sbjct: 280 VLPSLPYPTQSEMVAAFARWGFAVNPLMARVTSAEALIAHYRLIEAERAGLPYDIDGVVY 339

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+  LQ++LG  +RSPRW I+HKF  ++AST L  IDIQ+GRTG LTPVARLEPV +G
Sbjct: 340 KVDDLGLQRRLGFVSRSPRWAIAHKFPAEKASTLLTAIDIQVGRTGALTPVARLEPVTVG 399

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHN + I+ L            +R+GD V ++RAG+VIP+V+ ++ +    D
Sbjct: 400 GVVVTNATLHNAEEIERL-----------GVRIGDTVQIQRAGDVIPQVLGVVSSPE--D 446

Query: 425 AQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           A  F+FPS CP   ++ V+R+     G      RC+G  AC  Q+ E LKHFVSR AF+I
Sbjct: 447 AVAFAFPSICPCDLKTPVIRE-ETAGGVEGVVRRCSGEFACPFQRKEHLKHFVSRKAFDI 505

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSI 542
           +GLG++Q++FF+  ED    I  PADIFTL+ R + +   +++N  G+GD S   L+D+I
Sbjct: 506 DGLGEKQIEFFY--EDKTLPINQPADIFTLKMRDEANGLQRLKNRDGYGDTSAQKLFDAI 563

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
             +R ++LER IFSLGIRHVG + A++LA+ Y  +         I   ++     +  + 
Sbjct: 564 EAKREVALERLIFSLGIRHVGEQTAKTLARAYGDWTTLHAAALAIADGDSAAVEEMDALD 623

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G  + +AI  F+    NI  V+ L+ +++  +   +    S +    +VFTG+L+K+ 
Sbjct: 624 DIGPAVVEAIGRFFGEDHNIAMVDNLVSQLT-VLDAEKPAQDSPVAGLTVVFTGSLEKMT 682

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+    +LGA V+  +S+KTDI++ G   GSKL KAQ LGV+ M+E+ +  L+
Sbjct: 683 RDEAKAMAERLGAKVAGSVSKKTDILVAGPGAGSKLTKAQGLGVRTMDEDGWFELV 738


>gi|149203841|ref|ZP_01880810.1| DNA ligase, NAD-dependent [Roseovarius sp. TM1035]
 gi|149142958|gb|EDM31000.1| DNA ligase, NAD-dependent [Roseovarius sp. TM1035]
          Length = 717

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 287/685 (41%), Positives = 420/685 (61%), Gaps = 15/685 (2%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+    P I D+ YDALK R  AI   FP L R +  +   +++G        KV HSI 
Sbjct: 44  YHTEDAPEITDAAYDALKARNAAIEARFPTLKRDDSAS---DQVGAAPLDGFAKVAHSIR 100

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL   +  ED+ +F +RI R+    DD  + +T EPKIDG  +++RY +G+ V AA R
Sbjct: 101 MLSLGNAFEPEDVAEFDSRIRRYLGLPDDAPLAYTAEPKIDGLSLSLRYVQGRLVQAATR 160

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+V+A  R I  IP  L+   PEI+EVRGEVY+S  DF ALN        K +A
Sbjct: 161 GDGEVGENVTANARTITDIPESLT-GAPEILEVRGEVYMSHADFAALNARQAEKSDKQFA 219

Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+      R L FF +  G+ S   A+ Q   + +++ LGF  N    
Sbjct: 220 NPRNAAAGSLRQLDAKITAARPLRFFAYSWGEVSAPLAETQMGAIARLKALGFQTNPLTV 279

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
             +    ++ +Y  ++  R+TL YDIDG+VYKVD+  LQ +LG R+ +PRW I+HKF  +
Sbjct: 280 LCDGVEALLEHYARIEQARATLGYDIDGVVYKVDDLGLQARLGFRSTTPRWAIAHKFPAE 339

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
            A TRL  IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G D+ G+V+RGG+
Sbjct: 340 LAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAGRDSKGEVIRGGK 399

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIRVGD V V RAG+VIPKV D+ +++R   A P+ FP+ CP C S  VR+         
Sbjct: 400 DIRVGDWVQVYRAGDVIPKVADVDLSKRAEGATPYVFPATCPECGSDAVREEGD------ 453

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
           A  RC GGL C AQ +E+LKHFVSR AF+IEGLG +Q++ F++       I+ PADIF L
Sbjct: 454 AVRRCVGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFYRDG----WIKEPADIFLL 509

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           Q R  +   +++N  G+G+ S  NL+++I ++R I   R +F+LGIRHVG + +  +A+ 
Sbjct: 510 QERYGSGLQQLKNREGWGEKSAKNLFEAIEEKRKIPFGRLLFALGIRHVGEQASTLIARN 569

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           Y ++  F   ++    +   +W  L+ +  VG ++A+A+V  +  P    +++ L + ++
Sbjct: 570 YGTWDEFIAAMDGAKDYEGPEWERLLGIDGVGTVMARALVGAFAEPHERGSIDRLTEYLT 629

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                  +   S +  K +VFTG+L+K+ R +A+     LGA V+  +S KTD+++ G  
Sbjct: 630 VQEAARPRTDGSPVAGKTVVFTGSLEKMTRAEAKARAEGLGAKVAGSVSAKTDLLVAGPG 689

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLL 718
            GSK +KAQ LG++ ++E+ +L L+
Sbjct: 690 AGSKAKKAQDLGIETIDEDGWLTLI 714


>gi|23013561|ref|ZP_00053441.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 696

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 295/725 (40%), Positives = 444/725 (61%), Gaps = 43/725 (5%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R  +PI+ L+  +AR E + L +++   D+ Y+    P++ D  YD  KRR   I   FP
Sbjct: 3   RPPVPIDVLTPFEARIEHAELVEKLVSWDEAYHGQDAPLVPDDVYDGAKRRLSGIEARFP 62

Query: 64  DLARSEDPNGPL-NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           +LA       P+ +K+G   +    K+ H++P LSL+  ++ ED+ +F  ++ RF    D
Sbjct: 63  ELAA----KSPIKDKVGAAPSEGFGKLVHALPMLSLDNAFSPEDVAEFDAKVRRFLGLSD 118

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP--TIPRVLSLN 180
           +  + +  EPKIDG  I +RYE G FV AA RGDG  GEDV+  +   P   +PR L  +
Sbjct: 119 EAPLAYVAEPKIDGLSINLRYENGNFVSAATRGDGAEGEDVTRNLDTFPETQLPRRLGPD 178

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P +IE+RGEVY++K DFLALN    + G KP+ANPRNAA+G LR+L+P    +R L+ F
Sbjct: 179 APAVIEIRGEVYMTKADFLALNQRQESAGEKPFANPRNAAAGSLRQLDPKITASRPLSLF 238

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            + +G+ S + A   +  L++++  GF VN  +R+ +   G+++ Y  +   R+ LPYDI
Sbjct: 239 AYAMGEASSLPAASHWGYLERLKAWGFVVNPLIRRCDGVAGLLAAYGSLGEARAALPYDI 298

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD+  LQK+LG  +RSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL 
Sbjct: 299 DGIVYKVDDLELQKRLGFVSRSPRWAIAHKFPAEQATTLLEAIDIQVGRTGALTPVARLT 358

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PVN+GG +++NATLHNED I             +D+RVGD V+V+RAG+VIP++V ++  
Sbjct: 359 PVNVGGVVVSNATLHNEDEI-----------ARKDVRVGDTVIVQRAGDVIPQIVGVVPG 407

Query: 420 E-RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R P   PF +P  CP+C +  VR      G+++   RCTGGL C AQ  ERLKHFVSR
Sbjct: 408 KPRGP--TPFVYPDTCPVCGAHAVR----PEGEVI--RRCTGGLTCDAQAKERLKHFVSR 459

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +AF+IEGLG + ++F +   D  + +R PA IFTL+   Q    K+EN  G+G  S   L
Sbjct: 460 NAFDIEGLGDKNIEFLW---DKGW-VRKPAHIFTLEAANQDRLQKLENFEGWGKRSTEKL 515

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           ++SI  R ++ LERFIF+LGIR +G   A+ LA++Y  +Q +     + +     D L+ 
Sbjct: 516 FESIRSRASMGLERFIFALGIRQIGEATAKRLARHYGGFQAW----RDAMTEEGKDELTS 571

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLV 653
           I    +G  +A  +++F++   N  A++ L++ +    G     +  +  +S I  K +V
Sbjct: 572 IED--IGPSVAADLLDFFKEEHNRAALDDLVRAMEALGGGVQDAKRIEAFASPIAGKAVV 629

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTGTL  + R +A+     LGA V   +S+KTD ++VG + GSK  +A +LG+ I++E++
Sbjct: 630 FTGTLVTMTRPEAKARAEALGAKVVGSVSKKTDYVVVGADAGSKATEAAKLGLTILSEQE 689

Query: 714 FLFLL 718
           +L L+
Sbjct: 690 WLDLI 694


>gi|144899097|emb|CAM75961.1| NAD-dependent DNA ligase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 693

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 295/717 (41%), Positives = 434/717 (60%), Gaps = 32/717 (4%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I I+AL+  +AR E S+L +++   D  Y+Q   P + D+ YDA K R  AI   FP+LA
Sbjct: 3   IEIDALTPFEARIEASALREKLIRWDLAYHQADAPEVDDATYDAAKLRLLAIEARFPELA 62

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
                  P  KIG        KV H +P LSL+  ++ +D+R+F  RI RF     D  I
Sbjct: 63  ----AGSPTAKIGAPAAEGFGKVRHGVPMLSLDNAFSEDDVREFEGRIRRFLALPPDQII 118

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI---PTIPRVLSLNIPE 183
            F  EPKIDG  I++RYE G+FV AA RGDG  GEDV+A IR +     IP     + P+
Sbjct: 119 AFVAEPKIDGLSISLRYENGQFVRAATRGDGSEGEDVTANIRTLIRRGKIPERFD-DAPD 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242
           +IEVRGE+Y++K DFLALN    A G KP+ANPRNAA+G LR+LNP    +R L+ F + 
Sbjct: 178 LIEVRGEIYMTKADFLALNQRQEAAGDKPFANPRNAAAGSLRQLNPRVTASRELSTFFYA 237

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           LG+ + I     +E L ++   GFP     +   N    ++  Y  ++ +R++L +DIDG
Sbjct: 238 LGEHTTIKQNTHFEFLNQLTKWGFPCALQYISLYNNIDEMIQGYKNLQDLRASLDFDIDG 297

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
            VYKV+ F  Q++LG  +RSPRW I+HKF  +QA+T L  I+IQ+GRTG LTPVA L PV
Sbjct: 298 YVYKVNRFDWQQRLGFVSRSPRWAIAHKFPAEQATTLLERIEIQVGRTGALTPVAHLTPV 357

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           N+GG +++ A+LHNED         +++R G  +R GD V+++RAG+VIP+VV +++++ 
Sbjct: 358 NVGGVVVSRASLHNED---------EIIRKG--VREGDTVIIQRAGDVIPQVVGVVMDKP 406

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              A  F FP  CP+C S  VR     TG  V   RC+GGLAC AQ  ERL+HFVSR+AF
Sbjct: 407 R-GAADFLFPDTCPVCGSHAVR-----TGDEVI-RRCSGGLACKAQVKERLRHFVSRNAF 459

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG + +DF  + E     I  PADIF L+        +++N  G+G+  V  L+ +
Sbjct: 460 DIEGLGDENIDFLCEGE----WINKPADIFRLEAANAGRLQRLQNYKGWGEKKVAKLFAA 515

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I  RR I+LER I++LGIR VG   A+ LA++Y S+  + + +   +   ND +  LI +
Sbjct: 516 ITARRTIALERLIYALGIRQVGEATAKRLARHYGSFAVWRESMLAAVPRENDSYHDLISI 575

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  +A  I+ F+    N+ A++ L  +++ +  +  +  +S +  K +VFTG L  +
Sbjct: 576 EDIGPAVANDILAFFAEDHNVAALDDLAAQLTINDAQKIEAGNSPVSGKSVVFTGELVAM 635

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A+     LGA V   +S+KTD ++ G   GSKL +A++LG+ +++E+Q+L L+
Sbjct: 636 TRAEAKAKAEMLGAKVVGSVSKKTDYVVAGPGAGSKLAEAEKLGLTVLSEQQWLELI 692


>gi|304321380|ref|YP_003855023.1| NAD-dependent DNA ligase [Parvularcula bermudensis HTCC2503]
 gi|303300282|gb|ADM09881.1| NAD-dependent DNA ligase [Parvularcula bermudensis HTCC2503]
          Length = 727

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 289/744 (38%), Positives = 430/744 (57%), Gaps = 49/744 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E LS  +A  EL+ L  E++  D   Y+ + P++ D+ YDAL+RR +AI   FP L R++
Sbjct: 8   EELSEAEAADELARLAHEMAAAD-IAYENADPVMTDAAYDALRRRNEAIEARFPHLRRAD 66

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+    ++G   +    KV H++P LSL+  +  ED+ +F+TR+ RF +  ++  +  T
Sbjct: 67  SPS---LRVGTAPSGRFAKVRHALPMLSLDNAFADEDVDEFVTRVRRFLRLGEEEPLRLT 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            EPKIDG    +RYE+GKFV    RGDG  GED++  +  I  IP  L    P I+EVRG
Sbjct: 124 AEPKIDGLSANLRYEEGKFVLGTTRGDGTVGEDITRNLATIENIPARLE-GAPSILEVRG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+ K  F A+ND   A G K +ANPRNAA+G LR+ +P+    R L FF +  G+ S 
Sbjct: 183 EVYLGKEAFAAMNDAFAARGEKVFANPRNAAAGSLRQKDPSITADRPLRFFAYAWGEVSS 242

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q E ++++  LGF  N  +    T    +++Y  ++++R+ L YD+DG+VYKVD 
Sbjct: 243 PLGETQTEAVKRLSDLGFCTNELMGTFATAKEAIAHYRHIETLRAALDYDVDGVVYKVDR 302

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++LG  +RSPRW I+HKF+ ++A T L  IDIQ+GRTG LTP ARL PV +GG ++
Sbjct: 303 LDWQERLGAVSRSPRWAIAHKFSAEKAETVLERIDIQVGRTGALTPTARLRPVTVGGVVV 362

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHNED I  L           D+R GD V V+RAG+VIP+++ ++  +R  +AQP+
Sbjct: 363 SNATLHNEDEIARL-----------DVREGDSVCVQRAGDVIPQILSVLTEKRPKEAQPY 411

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S  VR+LN KTG+     RCTGGL C AQ +ERLKHFVSR A +I+GLG 
Sbjct: 412 RFPTHCPVCGSEAVRELNEKTGERDVVRRCTGGLICPAQGIERLKHFVSRKAMDIDGLGA 471

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV--------------- 533
           +Q++ F+        I  PADIFTL  R    T    +++G  D+               
Sbjct: 472 RQIEDFYGRH----MIAEPADIFTLPARYHQGTF---DVIGTSDLNSYKRLAPTATKPAR 524

Query: 534 ---------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
                    S+ NL+ +I   R+  L R IF+LGIRH+G    R +A+   +   F +  
Sbjct: 525 WTKEITNRKSLDNLFAAIEAARSRPLGRVIFALGIRHIGEMNGRLIAQGVETLSGFCRLG 584

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           + +   +      ++ +  +GD +  A+  F+  PRN  A++ L  E+SP+         
Sbjct: 585 DRLAKGDEAARQEMLAIDGIGDTVTDALAAFFHEPRNREALDRLAAEISPAAPPKPAQ-D 643

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           S    K +VFTG L+++ R +A+   T LGA VS  +S KTD ++ G   GSKL KA+ L
Sbjct: 644 SRFSGKTVVFTGKLERMSRDEAKARATSLGAKVSGSISAKTDYLVAGPGAGSKLTKAKDL 703

Query: 705 GVKIMNEEQFLFLLQQYNTTLRIH 728
           GV I+ E+++L  +     ++++ 
Sbjct: 704 GVDILTEDEWLEFISDEAVSVQLE 727


>gi|170739961|ref|YP_001768616.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46]
 gi|254781369|sp|B0UQ51|DNLJ_METS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168194235|gb|ACA16182.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46]
          Length = 827

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 307/840 (36%), Positives = 455/840 (54%), Gaps = 136/840 (16%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M  +   P+E ++ E+AR    +L  EI+ HD  Y+    PII D+ YD+L+RR +AI  
Sbjct: 1   MAAQTTRPVEEITAEEARAAHEALSAEIAEHDRRYHGEDAPIISDAAYDSLRRRLEAIEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDLA +   +     +G + +    KV H++P LSL   +  E++ +F+ R+ RF   
Sbjct: 61  RFPDLAGTGAASA---SVGAKASDKFAKVRHAVPMLSLGNAFADEEIEEFVERVRRFLGL 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSL 179
               S+  T EPKIDG  +++RYE G+ V AA RGDG  GEDV+A +R I  +P R+   
Sbjct: 118 PASESLAVTAEPKIDGLSLSLRYEGGRLVTAATRGDGEVGEDVTANVRTIREVPERLAGP 177

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           ++PEI EVRGEVY+S  DF A+N      G+  +ANPRNAA+G LR+L+P+   +R L F
Sbjct: 178 DVPEICEVRGEVYLSHADFAAINARQEEAGKPLFANPRNAAAGSLRQLDPSITASRPLRF 237

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +  G+ S   A+ Q  ++   R  G PVN    +  +   ++++Y  +++ R+ L YD
Sbjct: 238 FAYAAGEMSTWPAETQSGLIAAFRRFGLPVNPRTTRCTSVAEMLAHYRAIETERADLGYD 297

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD F+LQ++LG  AR+PRW ++HKF  ++A T +  I+I +GRTG L P+ARL
Sbjct: 298 IDGVVYKVDSFALQRRLGFVARAPRWALAHKFPAQRAVTTIEAIEINVGRTGSLNPLARL 357

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRG------------------GRDIRVGDR 400
            PV +GG +++NATLHNEDY++G+DA G  +R                   G D+RVGD 
Sbjct: 358 RPVTVGGVVVSNATLHNEDYVRGIDADGTPIRSGINIWDGFALRTDVDLSRGSDVRVGDT 417

Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG 460
           V+V RAG+VIPKV D+++  R  DA P+ FP  CP C S  VR  NP+TGKL +  RCTG
Sbjct: 418 VVVLRAGDVIPKVADVVLERRPADAVPYRFPEICPACGSHAVRSYNPRTGKLDSVRRCTG 477

Query: 461 GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ------ 514
           GL C AQ  ERLKHFVSR+A +IEG G+  +   F+    A  +R PAD+F L       
Sbjct: 478 GLICPAQGQERLKHFVSRNALDIEGFGETSITTLFE----AGLVRQPADLFRLDFAPLKA 533

Query: 515 ----RRQQTSTTKIENILGFG---------------DVSVTNLYDSINKRRNISLERFIF 555
               RRQ  S    E  L  G               D ++ NL  ++  RR + L RFIF
Sbjct: 534 AIVARRQALSA---ERALASGKAPEARKTKAKASEEDKAIRNLLAAVEARRVVPLNRFIF 590

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN-NDDWLSLIRVPLVG--------- 605
           +LGI  VG   A++LAK++       + +    AH    DW+ L  +  VG         
Sbjct: 591 ALGIEQVGEATAKALAKHFPDMPALMEGVRAAAAHQPGPDWVGLAALNRVGPTTRERLLA 650

Query: 606 -------DIIA------------QAIVEFYQNPR-------------------------- 620
                  D++A            +A++E Y +P                           
Sbjct: 651 AAEAGETDLLAEGTVARLSAAQKEALLEAYGSPEGVRAAVMRACRQRPGDAYRHLADDSE 710

Query: 621 -----------------NICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQ 659
                            N+ AVEALL +V     R E+      ++    + +VFTG+L+
Sbjct: 711 IGAVTTASLIQFFSEAHNVAAVEALLAQV-----RTERAAPPAAAAAFSGRTVVFTGSLE 765

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R +A+    +LGA VS  +S KTD+++ G   G+KL+ A++ GV++++E ++L +++
Sbjct: 766 RMTRSEAKATAERLGAKVSGSVSAKTDLVVAGPGAGTKLKDAEKHGVRVISEAEWLAMVE 825


>gi|83312957|ref|YP_423221.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1]
 gi|123726860|sp|Q2W0G3|DNLJ_MAGMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|82947798|dbj|BAE52662.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1]
          Length = 698

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 293/722 (40%), Positives = 440/722 (60%), Gaps = 39/722 (5%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP+EAL+  +AR E + L + I+  D+ Y+    P + D  YD  KRR   I   FP+L
Sbjct: 1   MIPVEALTPFEARIEHAELVETIARWDEAYHAKDAPEVPDDVYDGAKRRLARIEGRFPEL 60

Query: 66  ARSEDPNGPL-NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           A       P+ +K+G   +    K+ H++P LSL+  +  ED+ +F  ++ RF    D+ 
Sbjct: 61  A----AKSPIRDKVGAAPSEGFGKLVHAVPMLSLDNAFAPEDVAEFDAKVRRFLGLGDEA 116

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIP 182
            + +  EPKIDG  I +RYE G+FV AA RGDG  GEDV+  +   P   +PR L  + P
Sbjct: 117 PLAYVAEPKIDGLSINLRYEGGRFVSAATRGDGAEGEDVTRNLETFPATQLPRTLGPDAP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH 241
            +IE+RGEVY++K DFLALN    A G K +ANPRNAA+G LR+L+P    +R L+ F +
Sbjct: 177 AVIEIRGEVYMTKADFLALNQRQEAAGEKLFANPRNAAAGSLRQLDPKVTASRPLSLFAY 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +G+ S   A   +E L++++  GF VN  +R+ +   G++S Y  +   R+TL YDIDG
Sbjct: 237 AMGEASAPPAASHWEYLERLKAWGFVVNPLIRRCDGVAGLLSAYESLGEARATLAYDIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD+  LQ++LG  +RSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL PV
Sbjct: 297 IVYKVDDIELQRRLGFVSRSPRWAIAHKFPAEQATTLLEAIDIQVGRTGALTPVARLTPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           N+GG +++NATLHNED I             +D+R+GD V+V+RAG+VIP++V ++  + 
Sbjct: 357 NVGGVVVSNATLHNEDEI-----------ARKDVRIGDTVIVQRAGDVIPQIVGVVPGKP 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              A PF +P  CP+C +  VR      G+++   RCTGGL C AQ  ERLKHFVSR+AF
Sbjct: 406 R-GAVPFVYPETCPVCGAHAVR----PEGEVI--RRCTGGLTCEAQAKERLKHFVSRNAF 458

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGDVSVTNLYD 540
           +IEGLG++ ++F ++       +R PADIF L+ R       ++EN  G+G  S   L++
Sbjct: 459 DIEGLGEKNIEFLWEKG----WVRGPADIFRLKARNDAELLQRLENFEGWGKRSTEKLFE 514

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           SI  R  + LERFIF+LGIR +G   A+ LA++Y S+  +      ++A   +    L  
Sbjct: 515 SIKTRSAMGLERFIFALGIRQIGEATAKRLARHYGSFGAWRA---AMLAGTEEARAELTS 571

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIENKKLVFT 655
           +  +G  +A  +++F+    N+ AV+ L+  ++   G  E     ++ +S +  K +VFT
Sbjct: 572 IEDIGPSVAGDLLDFFSEEHNVQAVDDLVAAMAALDGAVEDAKVIESSASPVAGKAVVFT 631

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R +A+     LGA V   +S+KTD ++VG + GSK  +A +LG+  ++E+++L
Sbjct: 632 GTLVTMTRPEAKARAEALGAKVVGSVSKKTDYVVVGADAGSKAAEAVKLGIATLSEQEWL 691

Query: 716 FL 717
            L
Sbjct: 692 AL 693


>gi|126737638|ref|ZP_01753368.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6]
 gi|126721031|gb|EBA17735.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6]
          Length = 749

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 304/756 (40%), Positives = 438/756 (57%), Gaps = 64/756 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PI  LS  +A++EL+ L+  I   D  ++ +    I D  YD  KRR   +   FP L  
Sbjct: 4   PISDLSENEAQEELNELKLLIWSADRLHHTHDISEISDGAYDREKRRLKELVDTFPKLRP 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
             +    L+ +G        K++H+IP LSL   +   D+  F   I  +  +  D S+ 
Sbjct: 64  QAEK--ILDSVGAPAASGFGKISHAIPMLSLGNAFEDGDVADFTKGIRNYLGQSADQSLA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYE G+ V+ A RGDG +GEDV+   R I  IP+VL+   PEI+EV
Sbjct: 122 FTAEPKIDGLSLSLRYENGRLVHGATRGDGSTGEDVTENARTIADIPQVLT-GAPEILEV 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGK 245
           RGEVY+S  DF  LN      G K +ANPRNAA+G LR+L+  ++TR   L FF +  G+
Sbjct: 181 RGEVYMSHADFATLNARQEEQGGKSFANPRNAAAGSLRQLD-AEVTRARPLRFFAYSWGE 239

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE  AK Q+E ++++  LGF  N       +   ++++Y  ++  R+TL YDIDG+VYK
Sbjct: 240 LSEPLAKTQFEAIERLSVLGFQTNELTALCTSVEEMIAHYRRIEEQRATLGYDIDGVVYK 299

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ +LQ +LG RA +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 300 VNDMALQARLGFRATTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG 359

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI+G D  G+ +RGG++IRVGD V + RAG+VIPKV D+ + +R  + 
Sbjct: 360 VVVSNATLHNEDYIQGRDNKGEEIRGGKEIRVGDWVQIYRAGDVIPKVADVDIRKRTGNE 419

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF+FP+ CP C S  VR+         A  RCTGGL C AQ +E+LKHFVSR AF+I+G
Sbjct: 420 IPFAFPTTCPECGSEAVREEGD------AVRRCTGGLICPAQAIEKLKHFVSRKAFDIDG 473

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +QL+ FF  ED    IR P DI+ L++R   +  K++N  G+G  S  NL+ +I ++
Sbjct: 474 LGAKQLEMFF--EDTDLPIRTPVDIYRLEQRDGENLAKLKNRHGWGAQSAENLFAAITQK 531

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ-------------------NFAQEIN- 585
           R I L R IF LGIRHVG   A+ LA ++ S+                    + A+E   
Sbjct: 532 RRIPLGRMIFGLGIRHVGEVAAKDLALHFGSWADLAAAVDLAREAALAHRAADLAEEKER 591

Query: 586 -----------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
                                   + A   + W  LI +  +G  +  ++ +   N    
Sbjct: 592 QAAAAEGRRARIKETRDLEVSRLEVSASARESWEDLIGIDGIGATVGLSLSDALANVEER 651

Query: 623 CAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
             ++AL+ E+   +P+    E    S +  K +VFTG L+K+ R +A+     LGA VS 
Sbjct: 652 SVIDALVHELEIEAPAAPAQE----SPVAGKTVVFTGKLEKMTRDEAKARAEALGAKVSG 707

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +S+KTDI++ G   GSK +KAQ+LG++I++EE +L
Sbjct: 708 SVSKKTDILVAGPGAGSKEKKAQELGIEILDEEGWL 743


>gi|114768813|ref|ZP_01446439.1| DNA ligase [alpha proteobacterium HTCC2255]
 gi|114549730|gb|EAU52611.1| DNA ligase [alpha proteobacterium HTCC2255]
          Length = 711

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 287/720 (39%), Positives = 440/720 (61%), Gaps = 20/720 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E L   QA KEL  L + +   +  YY    PI+ D+EYD LK+R   I   FP+L  
Sbjct: 6   PVEKLDKMQAEKELIRLNEILDRANSDYYSNDAPILSDAEYDTLKKRNLDIESRFPNLKL 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               N   +KIG + + +  K+ H++  LSL   ++ +D+  F  R+ +     +D  I 
Sbjct: 66  K---NSVSDKIGSKPSSTFKKIKHTVKMLSLANGFDEQDIIDFDQRVKKILGF-EDRVIS 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  EPKIDG  ++++Y  GK   A  RGDG  GE+V+     I  IP+ +  N P I+E+
Sbjct: 122 YVAEPKIDGLSLSLKYIDGKLFQATTRGDGEVGENVTENAITIQNIPKYIH-NAPSILEI 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGEVY+S NDF  LN +   +  K ++NPRNAA+G LR+L+     +R L F+ +  G+ 
Sbjct: 181 RGEVYMSLNDFNELNIKQKNIDAKIFSNPRNAAAGSLRQLDSKVTASRPLKFYAYAWGEV 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S   +  QY  + ++R  GF  N+  ++      ++S+Y+ + + R+ L YDIDG+VYKV
Sbjct: 241 STPISDTQYNAIDRLRKFGFSTNDLTKKCYGPKELISHYDNISNKRADLGYDIDGVVYKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D  S Q +LG R+ +PRW I+HKF  + A T L  I+IQ+GRTG L+PVARL+PVN+GG 
Sbjct: 301 DNLSYQDRLGFRSTTPRWAIAHKFPAEIAQTWLESIEIQVGRTGALSPVARLKPVNVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNEDYIKG D+ G ++RGG DIR GD V V RAG+VIPK+ D+ V++R   ++
Sbjct: 361 IVSNATLHNEDYIKGKDSKGNIIRGGNDIREGDWVYVYRAGDVIPKISDVDVSKRISTSK 420

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P++FPSFCP C S   R      G  VA  RC GG+ C AQ ++ L HFVSR AF+I+GL
Sbjct: 421 PYTFPSFCPECSSPSER----IEGDSVA--RCIGGITCPAQAVQGLAHFVSRGAFDIDGL 474

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++ F++       ++ PADIF L+ R +    ++EN  G+G  S  NL+++I  +R
Sbjct: 475 GNKQIEQFYQ----LGWVKEPADIFKLKLRYENGIKRLENRDGWGQKSANNLFNAIESKR 530

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I L + +++LGIRHVG   A  L+K+Y S+ N  + +N   +     W  L+ +  VG+
Sbjct: 531 TIPLNKMLYALGIRHVGETSATLLSKHYKSFDNLKKSMNEAKSLEGSSWSDLMSIDGVGE 590

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRH 664
           I+A+A+V+ + NP     ++ L++E+   I    +N+   S +E   +VFTG+L+ + R 
Sbjct: 591 ILAKAVVQIFNNPAQRQIIDNLVEEL--VIENEIENIVSGSPLEGMVVVFTGSLELMTRS 648

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+    + GA VS  +S+KTD+++ G   GSK +KA +LGVK+++E ++L L+   N +
Sbjct: 649 EAKISAEKFGAKVSGSVSKKTDLVVSGPGAGSKEKKAIELGVKVLSESEWLKLINLNNLS 708


>gi|254465633|ref|ZP_05079044.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I]
 gi|206686541|gb|EDZ47023.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I]
          Length = 750

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 301/755 (39%), Positives = 443/755 (58%), Gaps = 61/755 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + AL+ E AR E  +LE ++   D  Y+Q   P I D+EYD+LK+R  A+A AFPDLA  
Sbjct: 9   VTALTAEDARAEFLALEDQLRAADLAYHQADAPEISDAEYDSLKQRYRALAEAFPDLA-- 66

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            D    L+ +G        K+TH++  LSL   +  ED+  F   + ++     + ++ +
Sbjct: 67  -DAATHLDAVGAPAASGFGKITHAVRMLSLGNAFAEEDVTDFDRSVRKYLGLGGEAALGY 125

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE+GK V AA RGDG  GE+V+A  R I  IP+ L+   PE++EVR
Sbjct: 126 TAEPKIDGLSLSLRYEQGKLVQAATRGDGSVGENVTANARTISDIPQHLT-GAPEVLEVR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKT 246
           GEVY+S  DF ALN      G K +ANPRNAA+G LR+L+  +ITR   L FF +  G+ 
Sbjct: 185 GEVYMSHADFEALNARHAERGGKIFANPRNAAAGSLRQLD-AEITRARPLRFFAYSWGEL 243

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S   A+ Q E +++++ LGF  N   R   +   ++ +Y  ++  R+TL YDIDG+VYKV
Sbjct: 244 SAPLAETQMEAIERLQSLGFQTNPLTRLCTSVADMIDHYRSIEEQRATLGYDIDGVVYKV 303

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG 
Sbjct: 304 NDLALQGRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGV 363

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNEDYI+G D+ G+ +RGG+DIR+GD V + RAG+VIPKV D+ +++R   A+
Sbjct: 364 VVSNATLHNEDYIQGRDSKGEEIRGGKDIRIGDWVQIYRAGDVIPKVADVDLSKRPQHAE 423

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C S   R+         A  RC+GGL C AQ +E+LKHFVSR AF+IEGL
Sbjct: 424 PYQFPHTCPECGSPAEREEGD------AVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGL 477

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++ F         I+ PADIF LQ    +   +++N  G+G+ S  NL+ +I ++R
Sbjct: 478 GAKQVEQFHSD----GWIKEPADIFDLQANYGSGLQQLKNREGWGEKSADNLFAAIEEKR 533

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-------------------------- 580
            I L + IF+LGIRH G    R LA +Y  +Q                            
Sbjct: 534 TIPLAKLIFALGIRHAGEVAGRDLALHYRDWQGMAAALDAARPAALAHRAADEAEEAERQ 593

Query: 581 --AQE---------------INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
             A+E                  + A     W  LI V  +G ++  ++ + + NP    
Sbjct: 594 SAAEEGRRARISETRAAAIAACEVPAEAASAWADLIGVDGIGAVLGLSLSDAFANPEERA 653

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           A++ L+ +++  +        S +  K +VFTGTL+K+ R +A+     LGA VS  +S+
Sbjct: 654 AIDRLVAKLT-VVPPDAPAADSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSK 712

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           KTDI++ G   GSK +KA +LG++ ++E+ +L L+
Sbjct: 713 KTDILVAGPGAGSKAKKAAELGIQTLDEDGWLELI 747


>gi|126729669|ref|ZP_01745482.1| DNA ligase, NAD-dependent [Sagittula stellata E-37]
 gi|126709788|gb|EBA08841.1| DNA ligase, NAD-dependent [Sagittula stellata E-37]
          Length = 714

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 295/709 (41%), Positives = 437/709 (61%), Gaps = 17/709 (2%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +QAR+EL +L   +   +  Y+    P + D+EYD LKRR   I   FP L  ++ P
Sbjct: 19  MTEDQAREELRALSDILGQANRAYHAEDAPELTDAEYDRLKRRNAEIEARFPQLKLADSP 78

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++G        KV H +  LSL   ++ +D+R F   I R+     D  + FT E
Sbjct: 79  S---EQVGAAPVDGFSKVRHEVRMLSLANAFDDDDIRDFDDSIRRYLGLGTDAPLAFTAE 135

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  + +RYE GK V AA RGDG  GEDV+A  R I  IP  L+   PE++EVRGEV
Sbjct: 136 PKIDGLSLALRYENGKLVRAATRGDGSEGEDVTANARTIDDIPTDLT-GAPEVLEVRGEV 194

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+S  DF ALN+   A G K +ANPRNAA+G LR+L+   IT  R L FF +  G  S+ 
Sbjct: 195 YMSHADFEALNERQTARGGKTFANPRNAAAGSLRQLD-AKITAERPLKFFAYAWGVLSDP 253

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A+ Q   + ++  LGF  N      +    ++++Y ++++ R+TL YDIDG+VYKV++ 
Sbjct: 254 LAETQKGAIDRLNALGFQTNPLTALCDGPEEMLNHYRKVEAQRATLGYDIDGVVYKVNDL 313

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG +++
Sbjct: 314 ALQERLGFRSTTPRWAIAHKFPAELAWTRLESIDIQVGRTGALSPVARLTPVTVGGVVVS 373

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNEDYI G D+SG  +RGG+DIR+GD V V RAG+VIPKV D+ +++R  DAQP+ 
Sbjct: 374 NATLHNEDYIAGRDSSGNEIRGGKDIRIGDWVQVYRAGDVIPKVADVDLSQRPEDAQPYV 433

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP C S  +R+         A  RC+GGL C AQ +E+LKHFV R AF+IEGLG +
Sbjct: 434 FPTKCPECGSDAIREEGD------AVRRCSGGLICPAQAVEKLKHFVGRSAFDIEGLGAK 487

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           Q++ F+        IR P DIFTL+ R  +   +++N  G+G+ S  NL+ +I++RR+I 
Sbjct: 488 QVEQFYAD----GWIREPVDIFTLRDRYGSGIQQLKNREGWGEKSALNLFSAIDERRHIP 543

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R IF LGIRHVG   +  LA++Y ++  F   + +      + W  L+ +  VG ++A
Sbjct: 544 LGRLIFGLGIRHVGESASNLLARHYGTWAIFEAAMKDAATMEGEAWDDLLSINGVGTVLA 603

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q++V          +++ L+  +            S +  K +VFTG+L+++ R +A+  
Sbjct: 604 QSLVSAMNQEAERASMDRLVAHLDVEEAVRPDTDGSPVAGKIVVFTGSLERMTRAEAKAR 663

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              +GA VS  +S+KTDI+++G   GSK +KA++LG+ +++E+ +L L+
Sbjct: 664 AEAMGAKVSGSVSKKTDIVVIGPGAGSKEKKARELGLTVLDEDAWLELI 712


>gi|163794455|ref|ZP_02188426.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199]
 gi|159180179|gb|EDP64702.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199]
          Length = 696

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/714 (39%), Positives = 419/714 (58%), Gaps = 29/714 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E LS  +A+ EL  L   IS  D  Y+    P++ D+EYDAL+RR  AI   FPDL  
Sbjct: 11  PVEELSDAEAKAELRRLSDAISEADRQYHVEDAPVLTDAEYDALRRRNQAIEERFPDLKL 70

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           ++ P+    ++    +    KV H+ P LSL   +N ED+ +F  R+ RF    +++ + 
Sbjct: 71  ADSPS---ERVAPGPSEGFSKVRHARPMLSLANAFNDEDVHEFARRVRRFLSLGEEDELA 127

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
              EPKIDG    +RY  G+    A RGDG  GE+++  +  +  +P  L   +P I+EV
Sbjct: 128 LVAEPKIDGLSAALRYVDGRLEVGATRGDGTEGENITRNLETLDDVPTTLPAGVPGILEV 187

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY++K+DF+ALND     G K +ANPRNAA+G LR+L+PT    R L FF +  G+ 
Sbjct: 188 RGEVYMTKDDFVALNDRQAKAGGKIFANPRNAAAGSLRQLDPTITAARPLRFFAYSWGEI 247

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A   +E L+K+   GF  N   ++  +    ++ Y ++   R+TLPYDIDG+VYKV
Sbjct: 248 SENIADTHWEFLKKLEAWGFTTNPLSQRCESVESALAVYADIGERRTTLPYDIDGVVYKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q++LG  +R+PRW I+HKF  +QA T L  I+IQ+GRTG LTPVARLEPV + G 
Sbjct: 308 DRLDWQQRLGMVSRAPRWAIAHKFKAEQAETVLKAIEIQVGRTGALTPVARLEPVKVAGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHNE         G++ R  +D+RVGD V+++RAG+VIP+VV +I+ +R  D+ 
Sbjct: 368 TVSNATLHNE---------GEIRR--KDVRVGDTVVIQRAGDVIPQVVRVILEKRPADSV 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP C S    D     G+ +   RCTGGL C AQ +ERLKHFVSRDAF+IEGL
Sbjct: 417 EYVFPETCPECGS----DAEQPEGEAI--RRCTGGLICPAQAVERLKHFVSRDAFDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+D F+ +      I+ P DIF L++ +     +     G   +S  NL  +I  RR
Sbjct: 471 GSKQIDGFYSN----GLIKRPGDIFRLKQHRDVLIGE----KGTKTISTDNLLAAIEDRR 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I  +RFI+SLGIR VG   AR LA  Y + +     +       ++    L+ +  +G 
Sbjct: 523 SIGFDRFIYSLGIRQVGQATARLLAINYGTLEALRTAMAAAHDPESEAHADLLNIDQIGS 582

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +A+ + +F+    N   ++ L  E++ +         S I  K +VFTGTL +I R++A
Sbjct: 583 SVAKDLADFFAEDHNAEVLDDLAAELTIAPFAAPAASDSPIAGKTVVFTGTLTRIGRNEA 642

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +     LGA V+  +S+KTD +I+G + GSK  KA+ LGV  ++E+++  L+ +
Sbjct: 643 KAKAESLGAKVAGSVSKKTDYVIIGADAGSKAAKAEALGVPTLSEDEWFTLIGE 696


>gi|297717812|gb|ADI50049.1| DNA ligase [Candidatus Odyssella thessalonicensis L13]
          Length = 676

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 275/697 (39%), Positives = 416/697 (59%), Gaps = 26/697 (3%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + I+YHD+ Y+Q   P I D+ YDAL  R   I + FPDL R + P+    ++G  ++
Sbjct: 1   LAKTIAYHDELYFQKDMPQISDAAYDALVVRNRQIENLFPDLRREDSPS---KRVGAPVS 57

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               KV H IP LSLE  +  +D+  F  R+ RF     D       EPKIDG    + Y
Sbjct: 58  KGFKKVKHRIPMLSLENAFTSDDVINFFERVRRFLSLPSDQEFPIVAEPKIDGLSAALHY 117

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALN 202
           ++GK   AA RGDG  GED++  +R I  +P+ L   N+PE +EVRGE+Y++++DF ALN
Sbjct: 118 QRGKLRLAATRGDGSEGEDITENVRCIIDVPQTLIGKNVPESLEVRGEIYMNRSDFFALN 177

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKM 261
            +        +ANPRNAA+G +R+L+PT   R  L FF +     S       +E L+ +
Sbjct: 178 QQRQQESEPEFANPRNAAAGSVRQLDPTVTARRPLRFFAYYYDAISGDTTMTHHEALENL 237

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           R  GF VN  ++   +   +  YYN + + R+ LPYDIDG+VYK+D    Q++LG   R+
Sbjct: 238 RRWGFTVNPEIQLCLSIAQLQDYYNSINARRADLPYDIDGVVYKIDALQWQRRLGSVGRT 297

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PR+ ++HKF  ++A T L DI IQ+GRTG+LTPVA L+PV +GG +++ ATLHN D I  
Sbjct: 298 PRYALAHKFEAEKAETILEDIAIQVGRTGVLTPVAHLKPVTVGGVVVSRATLHNADEI-- 355

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +D+RVGD V+++RAG+VIP++V ++  +R P++Q F FP+ CP C   +
Sbjct: 356 ---------ARKDVRVGDHVIIQRAGDVIPQIVSVVKEKRLPESQSFDFPATCPACGGEI 406

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           V       G++  A RC   L C AQ +ERLKHFVSRDAF+IEGLG + ++ F++     
Sbjct: 407 VY----VPGEV--ARRCMNRLLCPAQAVERLKHFVSRDAFDIEGLGNRNIEAFYEEG--- 457

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I  P DIFTL  R + S T +    G+G  S  NL+++I  RR I+L+RFI++LGI  
Sbjct: 458 -LIHSPVDIFTLAARDRESLTPLRAKEGWGSQSAANLFEAIENRRTITLDRFIYALGIPQ 516

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG+  A+ LA++Y +  N    +        D ++ L+ +  +G  +A+ I+ F+    N
Sbjct: 517 VGSVTAKLLARHYHTLPNLLNTLQQAQDPTTDAYVDLLSLDGIGKNMAEDILSFFHEAHN 576

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           +  ++AL  E+S      E + +S +  K +VFTGTL ++ R +A+    +LGA V+  +
Sbjct: 577 LKVIDALSHELSIPAYALEMSTTSAVSGKTVVFTGTLTRMSRAEAKATAERLGAKVAGSV 636

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+KTD++IVG + GSK   A +LGV++++E Q++ L+
Sbjct: 637 SKKTDLVIVGADAGSKARAAAELGVQVLDENQWMALI 673


>gi|83592275|ref|YP_426027.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170]
 gi|123753272|sp|Q2RVV5|DNLJ_RHORT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83575189|gb|ABC21740.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170]
          Length = 698

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 288/718 (40%), Positives = 433/718 (60%), Gaps = 35/718 (4%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP+  L+  +A +EL  L  EI+ HD  Y+Q   P I D EYDAL RR + I  AFP+L
Sbjct: 1   MIPVADLTEAEAARELERLAAEIARHDRLYHQQDAPEITDGEYDALVRRNNEIEAAFPEL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R + P+     +G        KVTH++P LSL  +++ ++ R+F  RI RF     + +
Sbjct: 61  VRGDSPSA---HVGAAPAEGFAKVTHALPMLSLGNVFSDDEAREFDQRIRRFLSLDGETT 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPE 183
           I +  EPKIDG   + RYE G +  AA RGDG +GED++A +  +  +P+ L+ +  +PE
Sbjct: 118 ISYVAEPKIDGLSFSARYENGVYRRAATRGDGTTGEDITANLATLTDLPQRLTGDGPVPE 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVH 241
           ++EVRGEV+++K DF ALN   I  G KP+ANPRNAA+G LR+L+P +ITR   L+ F +
Sbjct: 178 VLEVRGEVFMTKADFRALNQRQIDAGAKPFANPRNAAAGSLRQLDP-EITRSRSLSLFAY 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+   +  +  +  L++++  GFPVN   R       ++   + +   R+ L YDIDG
Sbjct: 237 ASGEVKGLEVESHHAFLERLKTWGFPVNPQTRPCQGVEDLIEATHALALQRAALDYDIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD    QK+LG  +R+PRW I+ KF  ++A T +  I IQ+GRTG LTPVA LEPV
Sbjct: 297 VVYKVDRVDWQKRLGFVSRAPRWAIARKFPAERAQTTVKAIQIQVGRTGTLTPVAILEPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG ++  ATLHNED I             +D+R+GD V ++RAG+VIP+VV++++++R
Sbjct: 357 TVGGVVVGRATLHNEDEI-----------ARKDVRIGDMVTIQRAGDVIPQVVEVLLDQR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             D+ PF FP  CP+C S  VR    + G++  A RC GGL CSAQ +ERLKHFVSRDAF
Sbjct: 406 PADSAPFVFPETCPVCGSHAVR----QEGEV--ARRCAGGLICSAQAVERLKHFVSRDAF 459

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR--QQTSTTKIENILGFGDVSVTNLY 539
           +IEGLG + ++ F         I  PADIF L+ +  +  +   + +  G+G  S  NL+
Sbjct: 460 DIEGLGGKHIETFHNEG----LITQPADIFALEAKDNEPGALQHLRSREGWGPKSAENLF 515

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I  R+ I L+RFI++LGIR VG   AR LA +Y S+  + + ++      ++ +  L 
Sbjct: 516 KAITARKTIPLDRFIYALGIRQVGQATARLLAGHYASFAAWRKAMDEAQTEGSEAFADLQ 575

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTG 656
            +  +G  +A+ +V F+    N  A++AL+    EV     R +    S +  K +VFTG
Sbjct: 576 NIESIGPSVARDLVAFFGEEHNRAALDALIDAGVEVL-DFARPQAAGDSPLAGKTVVFTG 634

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TL  + R +A+     LGA V+  +S KTD ++VG + GSK +KA++LG+ +++E +F
Sbjct: 635 TLDTMSRGEAKARALALGAKVTGSVSAKTDYVVVGADAGSKEKKARELGLTVLSEAEF 692


>gi|258542980|ref|YP_003188413.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634058|dbj|BAI00034.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637118|dbj|BAI03087.1| DNA ligase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640170|dbj|BAI06132.1| DNA ligase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643227|dbj|BAI09182.1| DNA ligase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646282|dbj|BAI12230.1| DNA ligase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649335|dbj|BAI15276.1| DNA ligase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652321|dbj|BAI18255.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655379|dbj|BAI21306.1| DNA ligase [Acetobacter pasteurianus IFO 3283-12]
          Length = 685

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 288/709 (40%), Positives = 421/709 (59%), Gaps = 38/709 (5%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +QAR+EL  L  EI++H+  YY+   P I D+EYDAL+RR DAI    P+   +E  
Sbjct: 1   MTQQQAREELERLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVAQHPE---AEPE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFT 129
           N     +G   + +  K  H +P LSL+ +++ ED   FI+R  RF     D +  + F 
Sbjct: 58  NSAAQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEGFISRATRFLGLDQDATEQLIFV 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            EPKIDG  I++ YEKG+FV    RGDG  GEDV+A +R +  +P  LS + P++IE+RG
Sbjct: 118 GEPKIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANLRTLKDLPLRLSGSYPDLIEIRG 177

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV++SK  FL LN    A  ++ +ANPRNAA+G LR+L+P     R L+ F + LG  SE
Sbjct: 178 EVFLSKKHFLELNAAQEAANKRLFANPRNAAAGSLRQLDPKITAQRPLSLFAYALGFCSE 237

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             ++  +  L++++  GFPVN   RQ        +++ E+   R+ L YDIDG+VYK+D+
Sbjct: 238 KISRSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEAFFAEVSQSRAELAYDIDGVVYKIDD 297

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG   R+PRW I+ KF  +QA TRL +I+IQ+GRTG LTPVA LEPVN+GG L+
Sbjct: 298 LALQERLGFAGRAPRWAIAWKFPAEQAITRLKEIEIQVGRTGALTPVAHLEPVNVGGVLV 357

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN-ERHPDAQP 427
             ATLHNED I             +D+R GD V ++RAG+VIP+V+ +  + +  P   P
Sbjct: 358 MRATLHNEDEI-----------ARKDVRPGDMVFIQRAGDVIPQVLGVAPSPDGTPRQAP 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP  CP+C +  VR          A  RCTGGL C AQ +ERL HFVSR AF+IEGLG
Sbjct: 407 YHFPDHCPVCGAAAVRPEGE------AVRRCTGGLTCPAQVVERLIHFVSRQAFDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +  F    D    I  P DIF L          IE   G+G+ SV  L  +I  RR 
Sbjct: 461 DRSIREF---HDIGL-ILTPGDIFRLHEH----AADIEKRDGWGEQSVQKLLQAIESRRT 512

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           ISL RFI++LGIR +GA  AR LA++Y +Y+N+  ++       +D  L L  +  +G  
Sbjct: 513 ISLSRFIYALGIRRIGASNARLLARHYGTYENWFSQMQAAAIIGSDARLELGSITGIGTT 572

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHK 665
            A+ +V F     N+      L ++  ++   E+  +SE  +  K +VFTGTL  + R +
Sbjct: 573 TAEDLVAFVAEEHNL----QTLADLHANLTITEETAASEGALAGKTIVFTGTLHTMTRPE 628

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           A+    ++GA VS  +S+KTD++++G+  GSK +KA +LG++ M+E ++
Sbjct: 629 AKATAERMGAKVSDSVSKKTDLVVLGEKAGSKAKKAVELGLQTMDEAEW 677


>gi|89054995|ref|YP_510446.1| DNA ligase, NAD-dependent [Jannaschia sp. CCS1]
 gi|123401112|sp|Q28PE1|DNLJ_JANSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|88864544|gb|ABD55421.1| DNA ligase NAD-dependent [Jannaschia sp. CCS1]
          Length = 752

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 289/747 (38%), Positives = 438/747 (58%), Gaps = 58/747 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S + A+  L+ L + +S  +  Y+    P + D++YDALKR   AI  AFPDL R++ P
Sbjct: 15  FSADAAKTRLAELAKRLSDANTAYHAADAPDLSDADYDALKRENAAIEAAFPDLKRADSP 74

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +   +++G        K+TH+   LSL   ++  D+  F+  I R+     +  + FT E
Sbjct: 75  S---DQVGAAPAEGFSKLTHTQRMLSLANAFDAGDVPDFVAGIRRYLNLGAEADLPFTAE 131

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I  IP+ L+ + P+++EVRGEV
Sbjct: 132 PKIDGLSLSLRYEDGQLVSAATRGDGAIGENVTANARTIDDIPQTLT-DAPDVLEVRGEV 190

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEI 249
           Y+S  DF ALND     G K +ANPRNAA+G LR+L+ + ITR   L FF +  G+ S  
Sbjct: 191 YMSHADFAALNDRQAEAGAKTFANPRNAAAGSLRQLDAS-ITRSRPLRFFAYAWGEVSAP 249

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A  Q   L  ++ LGF +N+  +  ++   ++++Y  ++  R+ L YDIDG+VYK+D+ 
Sbjct: 250 LAATQSGALNTLKTLGFQINDRTKTCHSAEDMLAHYASIEQDRADLGYDIDGVVYKIDDL 309

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +GG +++
Sbjct: 310 DYQRRLGMRSTTPRWAIAHKFPAELAWTTLEAIDIQVGRTGALSPVARLTPVTVGGVVVS 369

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNEDYI G DA+G  +R G+DIRVGDRV V RAG+VIPKV D+ + +R  +   ++
Sbjct: 370 NATLHNEDYIAGRDANGGPIRDGKDIRVGDRVQVYRAGDVIPKVADVDLAKRPENTAKYA 429

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP CQS  +R+         A  RCTGGL C AQ +E+LKHFVSR AF+I+GLG +
Sbjct: 430 FPDHCPQCQSEAIREEGD------AVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAK 483

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           Q++ F+        I  PADIF L+        ++ N  G+G+ S T+L+++I+ +R+I+
Sbjct: 484 QVEAFYLD----GWIAEPADIFRLKENYGEGMKQLRNREGWGEKSATSLFNAIDDKRSIA 539

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII----AHNNDD----------- 594
           L R IF+LGIRHVG   A  LA+++ +++  A+ ++       AH   +           
Sbjct: 540 LHRLIFALGIRHVGEVAASDLARHFTTWKALAEIVDQAAPAAEAHRRAEDAVLAERKAAA 599

Query: 595 --------------------------WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
                                     W  L  +  +G  +A ++V  +Q  R   +++ L
Sbjct: 600 DEGRRASLQPQRDKAWADTPEPAKAAWDDLTGIDGIGATVAVSLVTTFQQARERASIDRL 659

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           + E++       +   S +    +VFTG L+++ R +A+     +GA VS  +S KTDI+
Sbjct: 660 ITELTDIQPPEARATQSAVAGLTVVFTGALERMTRAEAKARAEAMGAKVSGSVSAKTDIV 719

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + G   GSK +KA+ LG++++ EEQ+L
Sbjct: 720 VAGPGAGSKEKKAKDLGIELLTEEQWL 746


>gi|329115587|ref|ZP_08244309.1| DNA ligase [Acetobacter pomorum DM001]
 gi|326695015|gb|EGE46734.1| DNA ligase [Acetobacter pomorum DM001]
          Length = 710

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 288/710 (40%), Positives = 421/710 (59%), Gaps = 40/710 (5%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++++QAR+EL  L  EI++H+  YY+   P I D+EYDAL+RR DAI    P   ++E  
Sbjct: 26  MTLQQAREELEHLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVAQHP---QAEPE 82

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW--QKKDDNSIFFT 129
           N     +G   + +  K  H +P LSL+ +++ ED   FI+R  RF    ++    + F 
Sbjct: 83  NSAAQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEGFISRATRFLGLDQEATEQLIFV 142

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            EPKIDG  I++ YEKG+FV    RGDG  GEDV+A +R +  +P  LS + P++IE+RG
Sbjct: 143 GEPKIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANLRTLKDLPLRLSGSYPDLIEIRG 202

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247
           EV++SK  FL LN    A  ++ +ANPRNAA+G LR+L+ + IT  R L+ F + LG  S
Sbjct: 203 EVFLSKKHFLELNAAQEAANKRLFANPRNAAAGSLRQLD-SKITAQRPLSLFAYALGFCS 261

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E  ++  +  L++++  GFPVN   RQ         ++ E+   R+ L YDIDG+VYK+D
Sbjct: 262 EKISRSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEVFFAEVSQNRAELAYDIDGVVYKID 321

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ++LG   R+PRW I+ KF  +QA TRL +I+IQ+GRTG LTPVA LEPVN+GG L
Sbjct: 322 DLALQERLGFAGRAPRWAIAWKFPAEQAVTRLKEIEIQVGRTGALTPVAHLEPVNVGGVL 381

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERHPDAQ 426
           +  ATLHNED I             +D+R GD V ++RAG+VIP+V+ +    +  P   
Sbjct: 382 VMRATLHNEDEI-----------ARKDVRPGDMVFIQRAGDVIPQVLGVAPSTDSTPRQA 430

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C +  VR          A  RCTGGL C AQ +ERL HFVSR AF+IEGL
Sbjct: 431 PYHFPDHCPACGAAAVRPEGE------AVRRCTGGLTCPAQVVERLIHFVSRQAFDIEGL 484

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +  F    D    I  P DIF L          IE   G+G+ SV  L  +I  RR
Sbjct: 485 GDRSIREF---HDIGL-ILTPGDIFRLHEH----AADIEKRDGWGEQSVQKLLQAIESRR 536

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            ISL RFI++LGIR +GA  AR LA++Y +Y+N+  ++       +D  L L  +  +G 
Sbjct: 537 TISLSRFIYALGIRRIGASNARLLARHYGTYENWFNQMQAAAIIGSDARLELGSITGIGT 596

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRH 664
             A+ +V F     N+      L ++  ++   E+  +SE  +  K +VFTGTL  + R 
Sbjct: 597 TTAEDLVAFVAEEHNL----QTLADLRANLTITEETAASEGALAGKTIVFTGTLHTMTRP 652

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           +A+    ++GA VS  +S+KTD++++G+  GSK +KA +LG++ M+E ++
Sbjct: 653 EAKATAERMGAKVSDSVSKKTDLVVLGEKAGSKAKKAVELGLQTMDEAEW 702


>gi|114327083|ref|YP_744240.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1]
 gi|122327935|sp|Q0BV35|DNLJ_GRABC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114315257|gb|ABI61317.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1]
          Length = 700

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/717 (39%), Positives = 428/717 (59%), Gaps = 34/717 (4%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
            L P EALS  +AR EL  L   I+  DD YY+   P++ D++YDAL++R   I   FPD
Sbjct: 10  SLTPPEALSPAEARAELERLASRIAELDDAYYRDDAPLVTDADYDALRQRNAEIERLFPD 69

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
                  N P N++G   + +  K+ H +P LSL+ +++ E+  +F  R  RF       
Sbjct: 70  AILK---NSPANRVGTAPSSAFAKIRHRVPMLSLDNVFDTEEFAEFCARARRFLNLP--A 124

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           S  F  EPKIDG  I++ YE G    AA RGDG  GEDV+A +R +  +P+ L    P  
Sbjct: 125 SPRFVAEPKIDGLSISLTYENGILTRAATRGDGMEGEDVTANVRTLRDVPQTLHGEAPAF 184

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           IE+RGEV++SK  FL LN+    +G+K +ANPRNAA+G LR+L+ +    R L  F +  
Sbjct: 185 IEIRGEVFMSKAAFLELNETQARLGQKIFANPRNAAAGSLRQLDASVTANRPLALFAYAQ 244

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G++S   A+  ++ L +++  GF VN   +     +   ++   + + RSTLPYDIDG+V
Sbjct: 245 GESSAPVAETHWDYLTRLKDWGFVVNPLSQLIEDENAAAAFTTRIAAGRSTLPYDIDGVV 304

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           +K+D+ SLQ++LG   R+PRW  + KF  +QA+T L  IDIQ+GRTG LTPVA L+ VN+
Sbjct: 305 FKIDDLSLQRRLGFVGRAPRWATAWKFPAEQATTVLEKIDIQVGRTGALTPVAHLQAVNV 364

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG L+T ATLHNED I             +D+R GD V+++RAG+VIP++V +++ +R  
Sbjct: 365 GGVLVTRATLHNEDEI-----------ARKDVREGDTVILQRAGDVIPQIVSVVLEKRPD 413

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            A+PF+    CP+C S  +R      G++V   RCTGGL C AQ +ERL H VSR AF+I
Sbjct: 414 GARPFAPLEHCPVCGSLAIR----PPGEVV--RRCTGGLTCEAQVVERLIHMVSRPAFDI 467

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG++ +  F +       +  PADIF L  R+     +I    G+G +S  NL  +I 
Sbjct: 468 DGLGEKSILEFHRDG----LVSGPADIFRLPARED----EIARRDGWGSLSARNLSQAIE 519

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            RR+I  +RF+++LGIR +G   AR LA++Y S+  +  ++       +D+ L+L  +  
Sbjct: 520 ARRSIPFDRFLYALGIRRIGETNARLLARHYGSFTEWRTQMLAARQIGSDERLALGSITG 579

Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +G  IA+ +V+F+  PRNI  ++ L   L   +PS G     + S +  K +VFTGTLQ 
Sbjct: 580 IGPTIAEELVDFFAEPRNIDTLDELAGMLTITAPSGGLSSAALDSPLNGKIIVFTGTLQA 639

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + R +A+     +GA V+  +S+KTD ++ G + GSK +KA +LG++ ++EE++L L
Sbjct: 640 MTRPEAKARAESMGAKVTDSVSKKTDFVVTGADAGSKAKKAAELGIRTLSEEEWLAL 696


>gi|84516174|ref|ZP_01003534.1| DNA ligase [Loktanella vestfoldensis SKA53]
 gi|84509870|gb|EAQ06327.1| DNA ligase [Loktanella vestfoldensis SKA53]
          Length = 722

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 291/717 (40%), Positives = 424/717 (59%), Gaps = 24/717 (3%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +  L+  +A  EL+ L Q ++  +  Y++   P I D+ YDALK+R  AI   F +L 
Sbjct: 22  IAVADLTRAEAMVELARLAQTLAQANTAYHRNDTPEISDAAYDALKQRNAAIEARFRELK 81

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R++ P+   +++G  +     KV H++  LSL   ++ +D+  F  R+ ++     D  +
Sbjct: 82  RADSPS---DQVGAVVADGFGKVQHAVRMLSLGNAFSDDDVTDFDERLRKYLGLTADQPL 138

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE G  V AA RGDG  GE+V+A    I  IP+ L+   P ++E
Sbjct: 139 RYTAEPKIDGLSLSLRYEDGVLVQAATRGDGAVGENVTANACTIADIPQRLT-GAPAVLE 197

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S +DF ALN      G K +ANPRNAA+G LR+L+      R L FF +  G 
Sbjct: 198 VRGEVYMSHDDFAALNARQADKGAKTFANPRNAAAGSLRQLDAGITAARPLRFFAYAWGA 257

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A  Q   + ++  LGF  N      ++   +++ Y+ +++ R++L YDIDG+VYK
Sbjct: 258 LSAPLAATQSGAIARLAELGFATNPLTATCDSPADLIAIYSGIEAQRASLGYDIDGVVYK 317

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 318 VDDLALQQRLGFRSTTPRWAIAHKFPAELAWTVLDAIDIQVGRTGALSPVARLVPVTVGG 377

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI G    G+ +R GRDIRVGD V V RAG+VIPK+ D+    R   A
Sbjct: 378 VVVSNATLHNEDYIAGRGGDGQPIRQGRDIRVGDWVQVYRAGDVIPKIKDVDSARRPAGA 437

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP  CP C S  +RD         A  RCTGG+ C AQ +ERLKHFVSR AF+IEG
Sbjct: 438 TPYIFPDTCPECGSPAIRDPGD------AVRRCTGGMICPAQAVERLKHFVSRAAFDIEG 491

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F         I  P DIFTL+ R      +++N  G+G  S  NL+ +I+ +
Sbjct: 492 LGAKQVEQFHADG----WITTPVDIFTLRARYGQGLQQLKNREGWGAKSADNLFAAIDDK 547

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I+L R I++LGIRHVG   A  LA +Y S+  FA  +          W +L  +  VG
Sbjct: 548 RAIALNRLIYALGIRHVGESSAALLANHYGSWAGFATAMQAAHIGQGPAWDALTSIDGVG 607

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            ++A +++   QNP    ++ AL+ ++    +P I        S +    +VFTGTL+K+
Sbjct: 608 AVMATSLITTLQNPSEAASIAALVAQLDVQDAPKIAS-----DSPVSGLTVVFTGTLEKM 662

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A+     LGA V+  +S KTDI++ G   GSK  KA+ LG++ M+E+ +L L+
Sbjct: 663 TRAEAKARAESLGAKVAGSVSAKTDILVAGPGAGSKAAKAEALGIRTMDEDGWLALI 719


>gi|241760920|ref|ZP_04759009.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374539|gb|EER64000.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 731

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 300/724 (41%), Positives = 445/724 (61%), Gaps = 53/724 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS EQA  EL  L   IS++D  Y+    P + DSEYDAL  R   I   FPDL R   P
Sbjct: 26  LSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIR---P 82

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+G   N  L K+ H    LSL+  +  +D+  F+ R+ RF+  K++ ++  T+E
Sbjct: 83  DSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAVICTVE 142

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PKIDG   ++RYEKG    A  RGDG  GEDV+  +R I  IP+ L   N PEIIE+RGE
Sbjct: 143 PKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEIIEIRGE 202

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           VY++K+DF ALN       +K +ANPRNAA+G LR+L+P +IT  R L F  HG G+ + 
Sbjct: 203 VYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDP-NITARRSLRFLAHGWGEATS 261

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + A  QY M++ +   G  V+N + +A+    ++ +Y ++++ R+ L +DIDG+VYK+D+
Sbjct: 262 LPADTQYGMMKMIESYGLSVSNLLARADNIGQMLDFYQKIEAERADLDFDIDGVVYKLDQ 321

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++ G  AR+PR+ ++HKF  ++A T LLDI+IQ+GRTG+LTPVA+LEPV +GG ++
Sbjct: 322 LDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVGGVVV 381

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           ++ATLHN D I+ L A           R GDRVLV+RAG+VIP++V+ + ++   D   +
Sbjct: 382 SSATLHNSDEIERLGA-----------RPGDRVLVQRAGDVIPQIVENLTSD--VDRPIW 428

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+C S   R+     G++  A RCTGGL C AQ++ERL HFVSR AF IEGLGK
Sbjct: 429 HFPHRCPVCDSVARRE----EGEV--AWRCTGGLICPAQRVERLCHFVSRTAFEIEGLGK 482

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++ FF  +     I  PADIF L +++Q    +     G+G++SV NL  +I+KRR +
Sbjct: 483 SHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDKRRKV 534

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------AQEINNIIAHNND--------- 593
             +RF+F+LGIRHVGA  AR LAK Y ++ NF      A  +  I+  +++         
Sbjct: 535 PFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQKR 594

Query: 594 ---DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
              + +S   +P +G  I +++++F+    N   V  LL+EV       E   SS +  K
Sbjct: 595 VDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFEL-ASSPLSGK 653

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +VFTG+LQKI R +A+     LGA V++ +S+KT++++ G+  GSKL KA++L + I++
Sbjct: 654 IIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISIID 713

Query: 711 EEQF 714
           E+++
Sbjct: 714 EDRW 717


>gi|114570616|ref|YP_757296.1| DNA ligase [Maricaulis maris MCS10]
 gi|122315591|sp|Q0AMX9|DNLJ_MARMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114341078|gb|ABI66358.1| DNA ligase, NAD-dependent [Maricaulis maris MCS10]
          Length = 701

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 286/716 (39%), Positives = 432/716 (60%), Gaps = 29/716 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+  +AR E + L +EI+ HD  YYQ   P I D+ YDAL+R+ +AI   FP     
Sbjct: 7   VDQLTEAEARAEHARLAREIAGHDKAYYQSDAPKISDAAYDALRRKLEAIEVRFPQFI-- 64

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            D   P  ++G   +    ++ H++P LSL   +N ED+  F+ RI RF    + + +  
Sbjct: 65  -DLLSPTQRVGAVPSGKFGEIRHAVPMLSLGNAFNDEDVADFVGRIRRFLGLAESDVVAV 123

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEV 187
           T EPKIDG   ++RY  GK V+ A RGDG +GEDV+  +  +  IP  L   + P+++EV
Sbjct: 124 TAEPKIDGLSASLRYVGGKLVHGATRGDGQTGEDVTQNLLTLDDIPDTLPPGDWPDVVEV 183

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEVY+S  DF ALN+  I  G+  Y NPRNAA+G LR+++P   + R L FF +  G+ 
Sbjct: 184 RGEVYMSHADFAALNERQIEAGKDAYKNPRNAAAGSLRQIDPKMTSQRPLRFFAYAWGEV 243

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  +  Q   + +   +GFPVN+ + +  T   +++ Y ++++ R+ L YDIDG+VYK 
Sbjct: 244 SEPLSDTQMGAVARFGEMGFPVNDLMARCETVEALLAVYRDIEARRAGLGYDIDGVVYKA 303

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q++LG  AR+PRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL PV +GG 
Sbjct: 304 DRLDWQERLGFVARAPRWAIAHKFPAEQATTILEAIDIQVGRTGALTPVARLTPVTVGGV 363

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++TNATLHN+D I+            +DIRVGD V+++RAG+VIP+VV ++  +R    +
Sbjct: 364 VVTNATLHNQDEIE-----------RKDIRVGDTVVIQRAGDVIPQVVRVVDPDRPGRGE 412

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F FP+ CP+C S+ +R+ + KTGKL    RCTGGL C AQ  ERLKHFVSR AF+IEGL
Sbjct: 413 AFDFPTECPVCGSQALREHDAKTGKLDVVRRCTGGLICGAQLKERLKHFVSRKAFDIEGL 472

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK--IENILGFGDVSVTNLYDSINK 544
           G +Q++ F +       I  PA IFTL+ R +    K  ++   GFG+ S+ NL+ SI  
Sbjct: 473 GIKQIEAFQEEG----LITEPAHIFTLKARNEAGEIKPPLQEREGFGETSIRNLFTSIED 528

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL--SLIRVP 602
           RR I+L RF+ +LGIRHVG   +   A+ Y S+  F     N+    +D+ +   ++ + 
Sbjct: 529 RRTITLARFLNALGIRHVGENTSALFARTYGSWAAFHAAAANL----SDEAVRAEMLGID 584

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G+   +A+ +++    N   ++ L+ +++        N  S +  K +VFTG L+++ 
Sbjct: 585 GIGNAAVEALEQYFTEAHNRDLLDRLVAQLTIEDAEAIAN-DSPVAGKTVVFTGALERMT 643

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+     LGA V+  +S KTD ++ G   GSK +KA +LGV+ + E+++  L+
Sbjct: 644 RDEAKAKAQALGAKVAGSVSGKTDYLVAGPGAGSKAKKAAELGVETLTEDEWFDLI 699


>gi|91205008|ref|YP_537363.1| NAD-dependent DNA ligase LigA [Rickettsia bellii RML369-C]
 gi|122990942|sp|Q1RK40|DNLJ_RICBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91068552|gb|ABE04274.1| DNA ligase, NAD-dependent [Rickettsia bellii RML369-C]
          Length = 689

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/715 (39%), Positives = 432/715 (60%), Gaps = 35/715 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE ++ E+A+K L  L  +I+ ++  YY   KP++ D+EYD L      +   FP L   
Sbjct: 4   IEKINEEEAKKLLIELADKIAQYNHAYYIEDKPLVSDAEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  KIG ++     KVTH +P LSL  +++ ED++ F+ RI  F +    + IF 
Sbjct: 64  ---NSPSKKIGAKVENKFAKVTHQVPMLSLSNVFDEEDVKDFLDRIKSFLRLDQFSPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG      Y+ G     A RGDG+ GED++A I+ I   P  ++ N PE++EVR
Sbjct: 120 -CEPKIDGLSFAATYKNGILTTGATRGDGYIGEDITANIKTIKDFPHKIN-NAPELLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI KNDF +LN E    G+  +ANPRNAA+G LR+L+P+    R L +FV+ +G   
Sbjct: 178 GEIYIEKNDFTSLNQEQEQQGKDKFANPRNAAAGSLRQLDPSVTAKRPLKYFVYAIGSAK 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E  A  Q ++L K + LGF VN   + AN+   I S+Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 EELANSQDQLLAKFKELGFNVNEIGKLANSEEEIFSFYEYLKTNRKNLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG +
Sbjct: 298 DFALQDRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVI 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+RVGD V ++RAG+VIP++  + + +R  DA  
Sbjct: 358 VSRATLHNYQEI-----------ARKDVRVGDYVFLQRAGDVIPQITGVDLAKRSADATT 406

Query: 428 FSFPSFCPICQSR---VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           F  P FCP C S+   V  D+           RC  GL C AQ  ER++HFVS++A +IE
Sbjct: 407 FDPPLFCPSCNSKLHYVPEDI---------IIRCDNGLNCPAQNYERIRHFVSKNAMDIE 457

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++F     D    I  P DIF L+ + + S TK+EN+ G+G  SV NL+++I K
Sbjct: 458 GLGRKQVEFLI---DKGL-ISNPYDIFFLKEKNEASLTKLENMDGWGKKSVENLFNNIEK 513

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +N+SL RFI++LGIRH+G + A+ L + + SY+NF  ++  +  ++ + +  L  +  +
Sbjct: 514 SKNVSLPRFIYALGIRHIGEQNAKLLTREFGSYENFIAQMELLKENDPEIYQKLNNLDGI 573

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           GD +   I++F+    NI  ++  L EV       E    S +  K +VFTG++  + R 
Sbjct: 574 GDKMLVDIIDFFDVKENIELIKN-LSEVLNIEDYKETREQSSLTGKIVVFTGSMPTLSRA 632

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+    +LGA V+A +S  TD++I G++ GSKL+KA++LG+KI++E ++L L++
Sbjct: 633 EAKATAEKLGAKVAASVSSNTDLVIAGEDAGSKLKKAKELGIKIIDEAEWLTLVR 687


>gi|157827661|ref|YP_001496725.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389]
 gi|166216232|sp|A8GXT8|DNLJ_RICB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157802965|gb|ABV79688.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389]
          Length = 689

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/715 (39%), Positives = 432/715 (60%), Gaps = 35/715 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE ++ E+A+K L  L  +I+ ++  YY   KP++ D+EYD L      +   FP L   
Sbjct: 4   IEKINEEEAKKLLIELADKIAQYNHAYYIEDKPLVSDAEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  KIG ++     KVTH +P LSL  +++ ED++ F+ RI  F +    + IF 
Sbjct: 64  ---NSPSKKIGAKVENKFAKVTHQVPMLSLSNVFDEEDVKDFLDRIKSFLRLDQFSPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG      Y+ G     A RGDG+ GED++A I+ I   P  ++ N PE++EVR
Sbjct: 120 -CEPKIDGLSFAATYKNGILTTGATRGDGYIGEDITANIKTIKDFPHKIN-NAPELLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI KNDF +LN E    G+  +ANPRNAA+G LR+L+P+    R L +FV+ +G   
Sbjct: 178 GEIYIEKNDFTSLNQEQEQQGKDKFANPRNAAAGSLRQLDPSVTAKRPLKYFVYAIGSAK 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E  A  Q ++L K + LGF VN   + AN+   I S+Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 EELANSQDQLLAKFKELGFNVNEIGKLANSEEEIFSFYEYLKTNRKNLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG +
Sbjct: 298 DFALQDRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVI 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+RVGD V ++RAG+VIP++  + + +R  DA  
Sbjct: 358 VSRATLHNYQEI-----------ARKDVRVGDYVFLQRAGDVIPQITGVDLAKRSADATT 406

Query: 428 FSFPSFCPICQSR---VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           F  P FCP C S+   V  D+           RC  GL C AQ  ER++HFVS++A +IE
Sbjct: 407 FDPPLFCPSCNSKLHYVPEDI---------IIRCDNGLNCPAQNYERIRHFVSKNAMDIE 457

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++F     D    I  P DIF L+ + + S TK+EN+ G+G  SV NL+++I K
Sbjct: 458 GLGRKQVEFLI---DKGL-ISNPYDIFFLKEKNEASLTKLENMDGWGKKSVENLFNNIEK 513

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +N+SL RFI++LGIRH+G +  + LA+ + SY+NF  ++  +  ++ + +  L  +  +
Sbjct: 514 SKNVSLPRFIYALGIRHIGEQNVKLLAREFGSYENFIAQMELLKENDPEIYQKLNNLDGI 573

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           GD +   I++F+    NI  ++  L EV       E    S +  K +VFTG++  + R 
Sbjct: 574 GDKMLVDIIDFFDVKENIELIKN-LSEVLNIEDYKETREQSSLTGKIVVFTGSMPTLSRA 632

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+    +LGA V+A +S  TD++I G++ GSKL+KA++LG+KI++E ++L L++
Sbjct: 633 EAKATAEKLGAKVAASVSSNTDLVIAGEDAGSKLKKAKELGIKIIDEAEWLTLVR 687


>gi|56551260|ref|YP_162099.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4]
 gi|59802648|sp|P28719|DNLJ_ZYMMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56542834|gb|AAV88988.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 731

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 299/724 (41%), Positives = 445/724 (61%), Gaps = 53/724 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS EQA  EL  L + IS++D  Y+    P + DSEYDAL  R   I   FPDL R   P
Sbjct: 26  LSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIR---P 82

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+G   N  L K+ H    LSL+  +  +D+  F+ R+ RF+  K++ ++  T+E
Sbjct: 83  DSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAVICTVE 142

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PKIDG   ++RYEKG    A  RGDG  GEDV+  +R I  IP+ L   N PEIIE+RGE
Sbjct: 143 PKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEIIEIRGE 202

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           VY++K+DF ALN       +K +ANPRNAA+G LR+L+P +IT  R L F  HG G+ + 
Sbjct: 203 VYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDP-NITARRSLRFLAHGWGEATS 261

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + A  QY M++ +   G  V+N + +A+    ++ +Y ++++ R+ L +DIDG+VYK+D+
Sbjct: 262 LPADTQYGMMKVIESYGLSVSNLLARADDIGQMLDFYQKIEAERADLDFDIDGVVYKLDQ 321

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++ G  AR+PR+ ++HKF  ++A T LLDI+IQ+GRTG+LTPVA+LEPV +GG ++
Sbjct: 322 LDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVGGVVV 381

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           ++ATLHN D I+ L            +R GDRVLV+RAG+VIP++V+ +  +   D   +
Sbjct: 382 SSATLHNSDEIERL-----------GVRPGDRVLVQRAGDVIPQIVENLTPD--VDRPIW 428

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+C S   R+     G++  A RCTGGL C AQ++ERL HFVSR AF IEGLGK
Sbjct: 429 RFPHRCPVCDSVARRE----EGEV--AWRCTGGLICPAQRVERLCHFVSRTAFEIEGLGK 482

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++ FF  +     I  PADIF L +++Q    +     G+G++SV NL  +I+KRR +
Sbjct: 483 SHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDKRRKV 534

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------AQEINNIIAHNND--------- 593
             +RF+F+LGIRHVGA  AR LAK Y ++ NF      A  +  I+  +++         
Sbjct: 535 PFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQKR 594

Query: 594 ---DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
              + +S   +P +G  I +++++F+    N   V  LL+EV       E   SS +  K
Sbjct: 595 VDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFEL-ASSPLSGK 653

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +VFTG+LQKI R +A+     LGA V++ +S+KT++++ G+  GSKL KA++L + I++
Sbjct: 654 IIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISIID 713

Query: 711 EEQF 714
           E+++
Sbjct: 714 EDRW 717


>gi|114797923|ref|YP_759116.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444]
 gi|122942770|sp|Q0C577|DNLJ_HYPNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114738097|gb|ABI76222.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444]
          Length = 701

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/697 (40%), Positives = 414/697 (59%), Gaps = 40/697 (5%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YYQ   P + D++YDAL++R  AI   FP L R + P    +++G E      K  HS P
Sbjct: 33  YYQNDAPELTDADYDALRQRNLAIEARFPALKREDSPT---DRVGAEAGDGFAKARHSAP 89

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+  +  ED+  F  RI RF     + ++ FT EPKIDG  +++ YE GK + AA R
Sbjct: 90  MLSLDNAFTDEDVADFAVRIRRFLGLAPEETLAFTAEPKIDGLSLSLTYENGKLMRAATR 149

Query: 155 GDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GEDV+A  R +  IP ++     PE IEVRGEVY++K+ F  LN      GRK +
Sbjct: 150 GDGQTGEDVTANARTLGDIPVKLKGKGWPERIEVRGEVYMAKSAFADLNAREAEAGRKVF 209

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAA+G LR+L+  +IT  R L FF +     SE FA+ Q+E ++     GF  N+ 
Sbjct: 210 ANPRNAAAGSLRQLD-VEITKSRPLRFFAYAWAAASEPFAQTQFEAVKAFADWGFVTNSR 268

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           + +  T   ++SYY E+++ R++L YDIDG+VYKVD    Q++LG  +R+PRW I+HKF 
Sbjct: 269 MIRIKTVEEVLSYYQEIEAERASLEYDIDGVVYKVDRLDWQQRLGFVSRAPRWAIAHKFP 328

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++A T LL IDIQ+GRTG LTPVARLEPV +GG +++NATLHNED I  L         
Sbjct: 329 AEKAVTTLLGIDIQVGRTGSLTPVARLEPVTVGGVVVSNATLHNEDEIARL--------- 379

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
              ++ GD+V ++RAG+VIP+V+ ++         P++ P  CP+C S  VR+++   G+
Sbjct: 380 --GVKPGDKVEIQRAGDVIPQVLRVV---EPGQGAPWAMPDTCPVCGSAAVREID-DAGR 433

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
                RCTGGL C AQ +ERLKHFVSR A +I+GLG++Q+  F +      +++ P DIF
Sbjct: 434 ADVRRRCTGGLICPAQAVERLKHFVSRKALDIDGLGEKQVLLFHEKG----AVKAPQDIF 489

Query: 512 TLQRR-QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
            L++  +      +E   GFG  S   LY +I+ RR +   RF+  LGIR+VG   +   
Sbjct: 490 RLKKNIEAAGLPPLEEWEGFGAQSARKLYSAIDARRKVPFARFLNGLGIRYVGQTTSAQF 549

Query: 571 AKYYLSYQNF-----AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN--IC 623
           A+ +LS+Q+F     A E   I    ++ +  LI +  +G   A++++ F   P N  + 
Sbjct: 550 ARSFLSWQSFWAAVKAAEEGGI---ESEAYNELIGIDGIGQAAARSLMAFEGEPHNREML 606

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           A      EV   I        S +  K +VFTGTL+K+ R +A+   + LGA V+  +S 
Sbjct: 607 AALLEEVEVEDEI---PAETGSPVTGKTVVFTGTLEKMTRDEAKARASALGAKVAGTVSA 663

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           KTDI+I G   GSKL KA+QLG+ +M E+++L L+ +
Sbjct: 664 KTDIVIAGPGAGSKLVKAEQLGLAVMTEDEWLALIGE 700


>gi|254453419|ref|ZP_05066856.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 238]
 gi|198267825|gb|EDY92095.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 238]
          Length = 661

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 280/668 (41%), Positives = 399/668 (59%), Gaps = 54/668 (8%)

Query: 96  LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155
           LSL   +  +D+ +F   + +F    +  ++ FT EPKIDG  +++RYE GK V AA RG
Sbjct: 2   LSLGNAFTDDDVSEFDKSVRKF-LGLETGALAFTAEPKIDGLSLSLRYEFGKLVQAATRG 60

Query: 156 DGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYAN 215
           DG  GE+V+A  R I  +P++L  + P+I+EVRGEVY+S  DF ALN      G K +AN
Sbjct: 61  DGAVGENVTANARTIHDVPQLLD-DAPDILEVRGEVYMSHADFEALNARQSKAGAKTFAN 119

Query: 216 PRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274
           PRNAA+G LR+L+     +R L FF +  G+ S   A  Q   + +++ LGF  N   + 
Sbjct: 120 PRNAAAGSLRQLDVSVTKSRPLKFFAYAWGEVSAPLADTQSGAIARLKTLGFQTNPLTQI 179

Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334
                 ++++Y +++S R+TL YDIDG+VYKVDE +LQ +LG R+ +PRW I+HKF  + 
Sbjct: 180 CTGPSDMIAHYRDIESQRATLGYDIDGVVYKVDELALQARLGFRSTTPRWAIAHKFPAEL 239

Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394
           A T L  IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G    G  +RGG+D
Sbjct: 240 AWTTLDAIDIQVGRTGALSPVARLSPVTVGGVVVSNATLHNEDYIAGRGNKGDDIRGGKD 299

Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
           IRVGD V + RAG+VIPKV D+ + +R  +A PF FP+ CP C S  VR+     G +V 
Sbjct: 300 IRVGDWVQIYRAGDVIPKVADVDLTKRPVEATPFDFPTTCPKCGSDAVRE----EGDVV- 354

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514
             RCTGGL C AQ +E+LKHFVSR AF+I+GLG +Q++ F+   D   +I+ PADIFTLQ
Sbjct: 355 -RRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAKQVEAFYN--DDQLAIKEPADIFTLQ 411

Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
            R   S TK+ N  G+GD SV  L+ +I+++R ISL R IF+LGIRHVG   A+ LA++Y
Sbjct: 412 ARDLDSFTKLANRDGWGDTSVKKLWQAIDEKREISLARLIFALGIRHVGEVTAQDLARHY 471

Query: 575 LSYQNFAQEIN----NIIAHNNDD------------------------------------ 594
            +++  A+ +       IAH   D                                    
Sbjct: 472 GTWEVLAENVKLGRPAAIAHRAADEAEADERFIADRDGRRPRVSEARKLAIANAGLSRTA 531

Query: 595 ---WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
              W  LI    +G  +A +  +   N     A+EAL++++   I    +  +S +  K 
Sbjct: 532 TKAWAFLIDADGIGATVALSFSDALSNAEESKAIEALIQQLDTIIAPQTQASNSPVAGKT 591

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +VFTGTL+K+ R +A+     LGA VS  +S KTD++I G   GSK +KA   G++ ++E
Sbjct: 592 VVFTGTLEKMTRAEAKARAESLGAKVSGSVSAKTDLLIAGLGAGSKAKKAADFGIETLSE 651

Query: 712 EQFLFLLQ 719
           + +L L +
Sbjct: 652 DGWLALTK 659


>gi|11095423|gb|AAG29863.1|AF313764_6 DNA ligase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|49284|emb|CAA77966.1| DNA ligase [Zymomonas mobilis subsp. mobilis CP4]
 gi|382210|prf||1819268B DNA ligase
          Length = 731

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 297/724 (41%), Positives = 444/724 (61%), Gaps = 53/724 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS EQA  EL  L + IS++D  Y+    P + DSEYDAL  R   I   FPDL R   P
Sbjct: 26  LSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIR---P 82

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+G   N  L K+ H    LSL+  +  +D+  F+ R+ RF+  K++ ++  T+E
Sbjct: 83  DSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAVICTVE 142

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PKIDG   ++RYEKG    A  RGDG  GEDV+  +R I  IP+ L   N PEIIE+RGE
Sbjct: 143 PKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEIIEIRGE 202

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           VY++K+DF ALN       +K +ANPRNAA+G LR+L+P +IT  R L F  HG G+ + 
Sbjct: 203 VYMAKSDFTALNARQTEENKKLFANPRNAAAGSLRQLDP-NITARRSLRFLAHGWGEATS 261

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + A  QY M++ +   G  V+N + +A+    ++ +Y ++++ R+ L +DIDG+VYK+D+
Sbjct: 262 LPADTQYGMMKMIESYGLSVSNLLARADDIGQMLDFYQKIEAERADLDFDIDGVVYKLDQ 321

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++ G  AR+PR+ ++HKF  ++A T LLDI+IQ+GRTG+LTPVA+LEPV +GG ++
Sbjct: 322 LDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVGGVVV 381

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           ++ATLHN D I+ L            +R GDRVLV+RAG+VIP++V+ +  +   D   +
Sbjct: 382 SSATLHNSDEIERL-----------GVRPGDRVLVQRAGDVIPQIVENLTPD--VDRPIW 428

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+C S   R+     G++  A RCTGGL C AQ++E L HFVSR AF I+GLGK
Sbjct: 429 HFPHRCPVCDSVARRE----EGEV--AWRCTGGLICPAQRVEALCHFVSRTAFEIDGLGK 482

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++ FF  +     I  PADIF L +++Q    +     G+G++SV NL  +I+KRR +
Sbjct: 483 SHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDKRRKV 534

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------AQEINNIIAHNND--------- 593
             +RF+F+LGIRHVGA  AR LAK Y ++ NF      A  +  I+  +++         
Sbjct: 535 PFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQKR 594

Query: 594 ---DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
              + +S   +P +G  I +++++F+    N   V  LL+EV       E   SS +  K
Sbjct: 595 VDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFEL-ASSPLSGK 653

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +VFTG+LQKI R +A+     LGA V++ +S+KT++++ G+  GSKL KA++L + I++
Sbjct: 654 IIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISIID 713

Query: 711 EEQF 714
           E+++
Sbjct: 714 EDRW 717


>gi|260753112|ref|YP_003226005.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552475|gb|ACV75421.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 731

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 297/724 (41%), Positives = 443/724 (61%), Gaps = 53/724 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS EQA  EL  L   IS++D  Y+    P + DSEYDAL  R   I   FPDL R   P
Sbjct: 26  LSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIR---P 82

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+G   N  L K+ H    LSL+  +  +D+  F+ R+ RF+  K++ ++  T+E
Sbjct: 83  DSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAVICTVE 142

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PKIDG   ++RYEKG    A  RGDG  GEDV+  +R I  IP+ L   N PEIIE+RGE
Sbjct: 143 PKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEIIEIRGE 202

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           VY++K+DF ALN       +K +ANPRNAA+G LR+L+P +IT  R L F  HG G+ + 
Sbjct: 203 VYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDP-NITARRSLRFLAHGWGEATS 261

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + A  QY M++ +   G  V+N + +A+    ++ +Y ++++ R+ L +DIDG+VYK+D+
Sbjct: 262 LPADTQYGMMKVIESYGLSVSNLLARADNIGQMLDFYQKIEAERADLDFDIDGVVYKLDQ 321

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++ G  AR+PR+ ++HKF  ++A T LLDI+IQ+GRTG+LTPVA+LEPV +GG ++
Sbjct: 322 LDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVGGVVV 381

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           ++ATLHN D I+ L            +R  DRVLV+RAG+VIP++V+ +  +   D   +
Sbjct: 382 SSATLHNSDEIERL-----------GVRPEDRVLVQRAGDVIPQIVENLTPD--VDRPIW 428

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+C S   R+     G++  A RCTGGL C AQ++ERL HFVSR AF I+GLGK
Sbjct: 429 HFPHRCPVCDSVARRE----EGEV--AWRCTGGLICPAQRVERLCHFVSRTAFEIDGLGK 482

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++ FF  +     I  PADIF L +++Q    +     G+G++SV NL  +I+KRR +
Sbjct: 483 SHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDKRRKV 534

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------AQEINNIIAHNND--------- 593
             +RF+F+LGIRHVGA  AR LAK Y ++ NF      A  +  I+  +++         
Sbjct: 535 PFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQKR 594

Query: 594 ---DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
              + +S   +P +G  I +++++F+    N   V  LL+EV       E   SS +  K
Sbjct: 595 VDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFEL-ASSPLSGK 653

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +VFTG+LQKI R +A+     LGA V++ +S+KT++++ G+  GSKL KA++L + I++
Sbjct: 654 IIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISIID 713

Query: 711 EEQF 714
           E+++
Sbjct: 714 EDRW 717


>gi|220920535|ref|YP_002495836.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060]
 gi|254781366|sp|B8ICE5|DNLJ_METNO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219945141|gb|ACL55533.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060]
          Length = 829

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 272/644 (42%), Positives = 379/644 (58%), Gaps = 56/644 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E ++  QAR+   SL  EI+ HD  Y+    PII D+EYDAL+RR +AI   FP+LA 
Sbjct: 10  PVEEMTAAQAREAHESLSAEIAEHDRRYHGEDAPIISDAEYDALRRRLEAIEERFPELAG 69

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +         +G + +    KV H++P LSL   +  E++ +F+ R+ RF        + 
Sbjct: 70  T---GAASVSVGAKASDKFAKVRHAVPMLSLGNAFAEEEITEFVERVRRFLGLPASEPLA 126

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           FT EPKIDG  +++RYE G+ V AA RGDG  GEDV+A +R I  IP  L+ + +PEI E
Sbjct: 127 FTAEPKIDGLSLSLRYEGGRLVTAATRGDGEVGEDVTANVRTIREIPHELAGDDVPEICE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           VRGEVY+S  DF A+N      GR  +ANPRNAA+G LR+L+P    +R L FF +  G+
Sbjct: 187 VRGEVYLSHADFAAINARQEEAGRPLFANPRNAAAGSLRQLDPGITASRPLRFFAYAAGE 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A+ Q  ++   R  G PVN   ++  +   ++++Y  +++ R+ L YDIDG+VYK
Sbjct: 247 MSSWPAETQSGLIGAFRRFGLPVNPRTKRCTSVAEMLAHYRAIETERAELGYDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VDEF+LQ++LG  AR+PRW ++HKF  ++A T +  I+I +GRTG L P+ARL+PV +GG
Sbjct: 307 VDEFALQRRLGFVARAPRWALAHKFPAQRAVTVIEAIEINVGRTGSLNPLARLKPVTVGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG------------------GRDIRVGDRVLVKRAG 407
            +++NATLHNEDYI+G+DA G  +R                   G D+RVGD V+V RAG
Sbjct: 367 VVVSNATLHNEDYIRGIDADGNTIRSGINIWDGFRLREDVDLRQGSDVRVGDTVVVLRAG 426

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           +VIPKV D+++  R  DA P++FP  CP C S  VR  NP+TGKL +  RCTGGL C AQ
Sbjct: 427 DVIPKVADVVLERRPADAVPYAFPETCPACGSHAVRAYNPRTGKLDSVRRCTGGLICPAQ 486

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQ 517
             ERL+HFVSR+AF+IEG G+  +   F+    A  +R PAD+F L           RRQ
Sbjct: 487 GQERLRHFVSRNAFDIEGFGETYIATLFE----AGLVRQPADLFRLDFEPLKAAIVARRQ 542

Query: 518 QTSTTKIENILGFG---------------DVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
             S    E  L  G               D ++ NL  ++  RR I L RFIF+LGI  V
Sbjct: 543 ALSA---ERALAAGKTPEAKKAKPKANEEDKAIHNLLAAVEARRTIPLNRFIFALGIEQV 599

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIA-HNNDDWLSLIRVPLVG 605
           G   A++LAK++       + +    A     DW+ L  +P VG
Sbjct: 600 GEATAKALAKHFPDMPALMEGVRAAAACRPGPDWIELASLPRVG 643



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 76/120 (63%), Gaps = 9/120 (7%)

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQ 659
           +G +   +++EF+    N+ AVEALL+EV     R E+      ++    + +VFTG+L+
Sbjct: 713 IGAVTTASLIEFFSEAHNVEAVEALLREV-----RTERAGTPAAAAVFSGQTVVFTGSLE 767

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R +A+    +LGA VS  +S KTD+++ G   GSKL+ A++ GV++++E ++L +++
Sbjct: 768 RMTRSEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVRVISEAEWLAMVE 827


>gi|162148970|ref|YP_001603431.1| DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
 gi|190359260|sp|A9H0L6|DNLJ_GLUDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161787547|emb|CAP57143.1| putative DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 695

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 284/709 (40%), Positives = 420/709 (59%), Gaps = 36/709 (5%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  QA  EL  L Q+I   D  YY+   P + D+EYDAL++R  AI   FPDL R++ P
Sbjct: 6   LTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPDLRRADSP 65

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFT 129
           +     + G  + +  +  H +P LSL+ ++  ED   F+TR  RF    DD +  + F 
Sbjct: 66  S---LHVSGAPSAAFGRHRHLVPMLSLDNVFGREDFESFVTRAARFLGLNDDQARALRFV 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            EPKIDG  I++ YE G+FV    RGDG  GEDV+A +R +  +P  L    P +IE+RG
Sbjct: 123 AEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDVPLRLKGPAPALIEIRG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247
           EV++SK  FL++N      G+KP+ANPRNAA+G LR+L+P +IT  R L+ F +  G +S
Sbjct: 183 EVFLSKPAFLSINAAQAEAGQKPFANPRNAAAGSLRQLDP-NITARRPLSLFAYAQGFSS 241

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A   ++ L+++R  GF VN       +     ++ + +   RS L YDIDG+VYKVD
Sbjct: 242 DRVADTHWDYLERLRQWGFTVNPLSCVVESAEAAEAFMDRIARERSGLEYDIDGVVYKVD 301

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG   R+PRW I+ KF  +QA TRL  IDIQ+GRTG LTPVA LEPVN+GG +
Sbjct: 302 DLALQDRLGFVGRAPRWAIAWKFPAEQAITRLTRIDIQVGRTGALTPVAILEPVNVGGVI 361

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV--NERHPDA 425
           +T ATLHNED I             +D+RVGD V ++RAG+VIP+++ ++    +  P  
Sbjct: 362 VTRATLHNEDEI-----------ARKDVRVGDLVQIQRAGDVIPQILGVVPPGADAPPRG 410

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F FP  CPIC +R  R      G++V   RCTGGL C AQ +ERL HFVSRDAF+I+G
Sbjct: 411 EAFIFPHTCPICGARAER----PPGEVV--WRCTGGLTCPAQVVERLIHFVSRDAFDIDG 464

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ +  F         ++ PADIF L   +    T+     G+G VS  NL  S+  R
Sbjct: 465 LGERTITEFHADG----LLKTPADIFRLPDHEADIATR----EGWGTVSARNLTASVRAR 516

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           + I L RFI++LGIR +G   AR LA++Y SY ++ +++       +D+ L+L  +  +G
Sbjct: 517 QTIPLARFIYALGIRRIGTSNARLLARHYGSYTHWREQMLRATTIGSDERLALGSITGIG 576

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             IA  +  F+    N+  ++ L   ++ +I   +      +  K +VFTGTL  + R +
Sbjct: 577 GAIADELAAFFMEAHNLETLDDLTAMLT-AIEDEDLPAQGHLSGKTVVFTGTLTTMTRPE 635

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           A+    +LGA V+  +S+KTD++++G + GSK  KA +LG+  ++EE +
Sbjct: 636 AKAIAERLGARVTDSVSKKTDLVVLGADAGSKARKAAELGIDTLDEEGW 684


>gi|99081239|ref|YP_613393.1| DNA ligase, NAD-dependent [Ruegeria sp. TM1040]
 gi|122984289|sp|Q1GGT5|DNLJ_SILST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|99037519|gb|ABF64131.1| DNA ligase NAD-dependent [Ruegeria sp. TM1040]
          Length = 739

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 294/749 (39%), Positives = 428/749 (57%), Gaps = 61/749 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR E  +L+ +I   D  Y+Q   P + D++YD LKRR  A+A AFP LA+       + 
Sbjct: 6   ARAEFEALQTKIEKADHDYHQKDAPTLSDADYDRLKRRYLALADAFPILAKD---GTRVA 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
            +G        KVTH+   +SL   +  +D+  F   + R+     +  + FT EPKIDG
Sbjct: 63  SVGAPAASGFGKVTHAQRMMSLGNAFEDQDVEDFAVGLRRYLGLSSEAPLAFTAEPKIDG 122

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++RYE GK V AA RGDG  GE+V+   R I  IP+ +S   PE++EVRGEVY+S  
Sbjct: 123 LSLSLRYEAGKLVQAATRGDGAVGENVTENARTISDIPQEIS-GAPEVLEVRGEVYMSHA 181

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKGQ 254
           DF ALN      G K +ANPRNAA+G LR+L+  +ITR   L FF +  G+ SE  A+ Q
Sbjct: 182 DFEALNARHAETGGKIFANPRNAAAGSLRQLD-AEITRARPLRFFAYSWGELSEPLAETQ 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            + ++++  LGF  N   R       ++++Y+ ++  R+ L YDIDG+VYKV++ SLQ++
Sbjct: 241 IDAIERLASLGFQTNPLTRCCEQISELLAHYHAIEEQRADLGYDIDGVVYKVNDLSLQER 300

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +GG +++NATLH
Sbjct: 301 LGFRSTTPRWAIAHKFPAELAWTHLEGIDIQVGRTGALSPVARLHPVTVGGVVVSNATLH 360

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NEDYI GLD+ G  +RGG+DIRVGD V + RAG+VIPKV D+ ++ R    + ++FP+ C
Sbjct: 361 NEDYIAGLDSKGAPIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSRRPEGTERYAFPTRC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S  VR+         A  RC+GGL C AQ +E+LKHFVSR AF+IEGLG +Q++ F
Sbjct: 421 PRCDSPAVREEGD------AVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQVEQF 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    ++ PADIF LQ+R  +   +++N  G+G+ S + L+ +I  +R I   R I
Sbjct: 475 HSDG----WVKEPADIFELQQRYGSGLQQLKNREGWGEKSASALFAAIEDKRRIEFARLI 530

Query: 555 FSLGIRHVGAEIARSLAKYYLSY------------------------------------- 577
           F LGIRHVG   A+ LA ++ ++                                     
Sbjct: 531 FGLGIRHVGEVAAKDLALHFRTWSALAEAADLARAAALAHRAADEAEIVERQEAQASARR 590

Query: 578 ------QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
                 +N A     +   +   W  LI V  +G  +A ++ + + NP    A + L+  
Sbjct: 591 AKISEARNAAVATCAVAPDSQAAWDDLISVDGLGPTVALSLSDAFANPEERAAFDRLIAH 650

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           +   I        S +  K +VFTGTL+K+ R +A+     LGA VS  +S+KTDI++ G
Sbjct: 651 LE-IIEPDAPADDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDILVAG 709

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              GSK  KA +LG++ ++E+ +L L+ Q
Sbjct: 710 PGAGSKAAKAAELGIQTLDEDGWLDLIGQ 738


>gi|87199755|ref|YP_497012.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM
           12444]
 gi|123763512|sp|Q2G7J5|DNLJ_NOVAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|87135436|gb|ABD26178.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM
           12444]
          Length = 721

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 291/746 (39%), Positives = 425/746 (56%), Gaps = 67/746 (8%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           AL+  +A  EL  L ++I+ H+  Y+    P I D+EYDAL RR   +  AFP L R   
Sbjct: 5   ALTEAEAANELMRLARQIAKHNRLYHAEDSPEITDAEYDALVRRNAELEAAFPHLIR--- 61

Query: 71  PNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           P+ P  +IG E+  S L KV H +  +SL+  +  E++ +F+ R+ RF    +D  +  T
Sbjct: 62  PDSPSAQIGHEIAASPLGKVQHEVRMMSLDNAFTDEEVEEFVARVRRFLALPEDAEVVMT 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEII 185
            E KIDG   ++RYE G+ V AA RGDG  GEDV+A +  IP IP+ L      +IP + 
Sbjct: 122 AEDKIDGLSCSLRYENGRLVRAATRGDGQVGEDVTANVAHIPDIPQELKAAGLFDIPAVF 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           E+RGEVY++K+DFLALN      G K +ANPRN A+G LR+ + +   +R L F  HG G
Sbjct: 182 EIRGEVYMAKDDFLALNARQAEAGEKIFANPRNGAAGSLRQKDASVTASRPLRFLAHGWG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             SE+ A  Q+EM++K+   G PV+  + + ++   +V++Y ++   R++LPYDIDG+VY
Sbjct: 242 AASEVPAATQFEMMRKIADWGVPVSPLLVRCSSAAEMVAHYRDIGEKRASLPYDIDGVVY 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q +LG  A++PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL+PV +G
Sbjct: 302 KVDRLDWQDRLGFVAKAPRWGIAHKFPAERAETTLDAIDIQVGRTGKLTPVGRLKPVLVG 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TN TLHN D I           G   +RVGDR++++RAG+VIP+VV+ +  E   D
Sbjct: 362 GVTVTNVTLHNRDEI-----------GRLGLRVGDRIVLQRAGDVIPQVVENLTREEPRD 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             P+ FP  CP C S  V +     G++    RCTGGL C AQ++ERLKHFVSR A +IE
Sbjct: 411 --PYHFPDHCPECGSEAVAE----EGEVDV--RCTGGLICPAQRVERLKHFVSRAALDIE 462

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +  FF+       +  PADIF L++R+    ++I    G+ D SV NL  +I  
Sbjct: 463 GLGEKTIIEFFQ----LGWLESPADIFRLRKRR----SEIVGREGWKDKSVDNLLAAIEA 514

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ---------------------- 582
           +R     R +F LGIRHVGA  AR L K +++     +                      
Sbjct: 515 KRQPDAARLLFGLGIRHVGAVTARDLMKRFVTLPALREAARQASSAAREGEPANADGAYD 574

Query: 583 --------EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
                   +     A  +D    L+ +  VG ++ +A+ +F+  P NI   E LL EVSP
Sbjct: 575 PATVTPDSDTAGAEAGRSDALADLLSIDGVGPVVVEALGDFFHEPHNIAVWEDLLSEVSP 634

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                E    S +  K +VFTG L+ + R +A+     LGA  +  +S KTD+++ G   
Sbjct: 635 PPYVVETK-DSAVAGKTIVFTGKLETMSRDEAKAQAEALGARTAGSVSAKTDLVVAGPGA 693

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           GSKL++A  LG+ +++E  +  +++Q
Sbjct: 694 GSKLKQAAALGIDVIDEAAWAEIVRQ 719


>gi|209545276|ref|YP_002277505.1| NAD-dependent DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532953|gb|ACI52890.1| DNA ligase, NAD-dependent [Gluconacetobacter diazotrophicus PAl 5]
          Length = 708

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/716 (39%), Positives = 424/716 (59%), Gaps = 37/716 (5%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +L P E L+  QA  EL  L Q+I   D  YY+   P + D+EYDAL++R  AI   FPD
Sbjct: 13  RLDPSE-LTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPD 71

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R++ P+     + G  + +  +  H +P LSL+ ++  ED   F+TR  RF    DD 
Sbjct: 72  LRRADSPS---LHVSGAPSAAFGRHRHLVPMLSLDNVFGREDFESFVTRAARFLGLNDDQ 128

Query: 125 S--IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           +  + F  EPKIDG  I++ YE G+FV    RGDG  GEDV+A +R +  +P  L    P
Sbjct: 129 ARALRFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDVPLRLKGPAP 188

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFV 240
            +IE+RGEV++SK  FL++N      G+KP+ANPRNAA+G LR+L+P +IT  R L+ F 
Sbjct: 189 ALIEIRGEVFLSKPAFLSINAAQAEAGQKPFANPRNAAAGSLRQLDP-NITARRPLSLFA 247

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           +  G +S+  A   ++ L+++R  GF VN       +     ++ + +   RS L YDID
Sbjct: 248 YAQGFSSDRVADTHWDYLERLRQWGFTVNPLSCVVESAEAAEAFMDRIARERSGLEYDID 307

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKVD+ +LQ +LG   R+PRW I+ KF  +QA TRL  I+IQ+GRTG LTPVA LEP
Sbjct: 308 GVVYKVDDLALQDRLGFVGRAPRWAIAWKFPAEQAITRLTRINIQVGRTGALTPVAILEP 367

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV-- 418
           VN+GG ++T ATLHNED I             +D+RVGD V ++RAG+VIP+++ ++   
Sbjct: 368 VNVGGVIVTRATLHNEDEI-----------ARKDVRVGDLVQIQRAGDVIPQILGVVPPG 416

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +  P  + F FP  CPIC +R  R      G++V   RCTGGL C AQ +ERL HFVSR
Sbjct: 417 ADAPPRGEAFIFPHTCPICGARAER----PPGEVV--WRCTGGLTCPAQVVERLIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           DAF+I+GLG++ +  F         ++ PADIF L   +    T+     G+G VS  NL
Sbjct: 471 DAFDIDGLGERTITEFHADG----LLKTPADIFRLPDHEADIATR----EGWGTVSARNL 522

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             S+  R+ I L RFI++LGIR +G   AR LA++Y SY ++ +++       +D+ L+L
Sbjct: 523 TASVRARQTIPLARFIYALGIRRIGTSNARLLARHYGSYTHWREQMLRATTIGSDERLAL 582

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  +G  IA  +  F+    N+  ++ L   ++ +I   +      +  K +VFTGTL
Sbjct: 583 GSITGIGGAIADELAAFFMEAHNLETLDDLTAMLT-AIEDEDLPAQGHLSGKTVVFTGTL 641

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             + R +A+    +LGA V+  +S+KTD++++G + GSK  KA +LG+  ++EE +
Sbjct: 642 TTMTRPEAKAIAERLGARVTDSVSKKTDLVVLGADAGSKARKAAELGIDTLDEEGW 697


>gi|163854038|ref|YP_001642081.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1]
 gi|254781364|sp|A9VWA4|DNLJ_METEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163665643|gb|ABY33010.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1]
          Length = 814

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/621 (41%), Positives = 378/621 (60%), Gaps = 31/621 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +EALS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   FP L  +
Sbjct: 10  VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            + +     +G + +    KV H++P LSL   +  ED+ +F+ R+ RF     + S+ F
Sbjct: 70  TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEESVAF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEV 187
           T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  LS  NIPE++EV
Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGENIPEVLEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  G+ 
Sbjct: 187 RGEVYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDIDG+VYKV
Sbjct: 247 SEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRTIEAERAGLGYDIDGVVYKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG 
Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++ +R  DA 
Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIEKRPADAV 426

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+ F++EG 
Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 486

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTK-----------IE 525
           G+  ++  F+    A  ++ PAD+F L+          RR+  S  +            +
Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARRETLSAQRRSEGEPAPKKPTK 542

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                 D ++ NL  S++ RR I L RF+F+LGI  +G   A++LAK +    +    + 
Sbjct: 543 KKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMPSLMAALE 602

Query: 586 NII-AHNNDDWLSLIRVPLVG 605
                    DWL L  +P +G
Sbjct: 603 AATREQAGRDWLELSALPRIG 623



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 73/117 (62%), Gaps = 1/117 (0%)

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G +   ++++F+  P N  AV ALL+EV  +        ++    K +VFTG+L+K+ R
Sbjct: 698 IGPVATDSLIQFFSEPHNDAAVRALLEEVG-TEPLATTTSAAAFAGKTVVFTGSLEKMTR 756

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A+    +LGA VS  +S KTD+++ G   GSKL+ A++ GVK+++E+ +L +L +
Sbjct: 757 SEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813


>gi|90424785|ref|YP_533155.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18]
 gi|123275077|sp|Q211V0|DNLJ_RHOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|90106799|gb|ABD88836.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18]
          Length = 795

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/799 (36%), Positives = 427/799 (53%), Gaps = 115/799 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ LS  +A+ EL  L  EI  H++ YYQ   P I D+EYDAL+ R +AI   FP+L  S
Sbjct: 12  LDTLSKAKAKVELKRLSLEIERHNNAYYQDDAPKISDAEYDALRHRVEAIEAKFPELVSS 71

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P     K+G        KV H++P LSL   ++ +++ +F+TR+ RF +   +     
Sbjct: 72  DSPT---QKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLTRVRRFLKLDAEQIPAI 128

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEV 187
             EPKIDG  +++RYE GK V AA RGDG +GEDV+A +R I  IP  L++   P   E+
Sbjct: 129 VAEPKIDGLSLSLRYEHGKLVRAATRGDGFTGEDVTANVRTIKDIPHALAVAEPPAACEL 188

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEVY+ K+DFLALN      G  P+ANPRN+A+G LR+ +     +R L FF +  G+ 
Sbjct: 189 RGEVYMLKSDFLALNQRQETAGEPPFANPRNSAAGSLRQKDVAITASRPLKFFAYAWGEF 248

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S++    QY ML  ++  GF VN  +    +    +++Y ++   R+TLPYDIDG+VYKV
Sbjct: 249 SDLPEATQYGMLGWLKRAGFTVNPLITLCKSVDDALAFYRKIGEERATLPYDIDGVVYKV 308

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q++LG   R+PRW I+HKFA +QA+T L  I+IQ+GRTG LTPVARL PV +GG 
Sbjct: 309 DRLDWQERLGFAGRAPRWAIAHKFAAEQATTILNGIEIQVGRTGALTPVARLAPVTVGGV 368

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYIK L           DI +GD V+V+RAG+VIP++V ++ ++R  DA+
Sbjct: 369 VVQNATLHNEDYIKSL-----------DIHIGDTVVVQRAGDVIPQIVSVVRDKRPEDAE 417

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP FCP C S  VRD +       A  RCTGGL C AQ +ERL+HFVSR AF+I G 
Sbjct: 418 PYEFPKFCPACGSHAVRDEDEGE----AVRRCTGGLICPAQAIERLRHFVSRGAFDIAGF 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ-----------RRQQTSTTKIENILGFGDVS- 534
           G+  ++  ++       +R PADIF L            R++++  T+ E   G    S 
Sbjct: 474 GETYVELLYEEG----LVRNPADIFALHSKVDELKAALFRKRESLATQREEKTGKKRKSS 529

Query: 535 ----------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
                     V NL  +I+ RR ++  RFIF LGIRHVG   +++L +++   + F   +
Sbjct: 530 LSEEKRQYTDVENLLAAIDARRTVAFNRFIFGLGIRHVGEVTSKALVRHFADVKAFLDGV 589

Query: 585 N-NIIAHNNDDWLSLIRVPLVGDIIAQAIVEF--------------------------YQ 617
           +   +A     WL L  V  +G+I  + ++E                           Y 
Sbjct: 590 DAAALARPGPAWLDLKNVRYIGEITLERLLEIQGGADTNEERQGFQPDARQRASLLSHYG 649

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEI--------------ENKKLVFTGTLQKIQ- 662
           N   I       +  +P     +    SEI               N + V T  + ++Q 
Sbjct: 650 NEEKIAGALQAARSEAPGPAFQQLANDSEIGEVATQSLIDFFEETNNRQVVTALMDQVQV 709

Query: 663 ---------------------------RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
                                      R +A+    +LGA V++ +S KTD+++ G + G
Sbjct: 710 ERPAAASAKSPISGKIVVFTGALERTTRDEAKAIAERLGAKVASSVSSKTDLVVAGPSAG 769

Query: 696 SKLEKAQQLGVKIMNEEQF 714
           SKL  AQ+ GVK++ EE++
Sbjct: 770 SKLRDAQKFGVKVLTEEEW 788


>gi|84500836|ref|ZP_00999071.1| DNA ligase, NAD-dependent [Oceanicola batsensis HTCC2597]
 gi|84390903|gb|EAQ03321.1| DNA ligase, NAD-dependent [Oceanicola batsensis HTCC2597]
          Length = 626

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/637 (42%), Positives = 395/637 (62%), Gaps = 15/637 (2%)

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
           +   K+TH++  +SL   ++  D+ +F  RI  +     D  + +T EPKIDG  +++RY
Sbjct: 1   MGFGKITHAVRMMSLANAFDDADVAEFDARIRSYLNLAADAPLAYTAEPKIDGLSLSLRY 60

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E G+ V AA RGDG  GE+V+A  R I  IP V     PE++EVRGEVY+S  DF ALN 
Sbjct: 61  ENGRLVQAATRGDGEVGENVTANARTIDDIP-VEVTGAPEVMEVRGEVYMSHADFAALNA 119

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKGQYEMLQKM 261
                G K +ANPRNAA+G LR+L+   ITR   L FF +  G  S   A  Q + ++++
Sbjct: 120 RQAERGGKTFANPRNAAAGSLRQLD-AQITRARPLRFFAYSWGDLSAPLAATQTQAIERL 178

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           R LGF  N   R+ +    ++ +Y  ++  R+TL YDIDG+VYKVD+ +LQ +LG R+ +
Sbjct: 179 RRLGFRTNPLTRRCDGPQDMLDHYRSIEEQRATLGYDIDGVVYKVDDLALQNRLGSRSTT 238

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G
Sbjct: 239 PRWALAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAG 298

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
            D+ G+ +RGG+DIR+GD V V RAG+VIPKV D+ +++R  DA+P+ FP+ CP C S  
Sbjct: 299 RDSRGEEIRGGKDIRIGDWVQVYRAGDVIPKVADVDLSKRPDDAEPYVFPTKCPECGSDA 358

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           +R+         A  RCTGG+ C AQ +E+LKHFVSR AF+IEGLG +Q++ F+      
Sbjct: 359 LREPGD------AVRRCTGGVVCPAQAVEKLKHFVSRAAFDIEGLGARQVEAFYTD---- 408

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I  PA+IFTL+ R       ++N  G+G+ S TNL+ +I+++R I L R +F+LGIRH
Sbjct: 409 GWITEPAEIFTLEERYGRGLRALKNREGWGEKSATNLFRAIDEKRRIPLSRLLFALGIRH 468

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   +  +A +Y ++    +E     A        L  +  VG+++A ++   + NP  
Sbjct: 469 VGESASALIANHYGTWDAL-EEAMVAAAEPGQAREDLTGIDGVGEVMATSLTSAFANPAE 527

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
             +++ L+  +     R      S +  K +VFTGTL+K+ R +A+     LGA VS  +
Sbjct: 528 RASMDRLVAHLDVQESRRAVAADSPVAGKTVVFTGTLEKMTRAEAKARAESLGAKVSGSV 587

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S KTD+++ G   GSK +KA +LGV+ M+E+ +L L+
Sbjct: 588 SAKTDLLVAGPGAGSKAKKAAELGVETMDEDGWLALI 624


>gi|326387612|ref|ZP_08209218.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207658|gb|EGD58469.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 687

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/710 (40%), Positives = 417/710 (58%), Gaps = 33/710 (4%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + I+A++   A  EL  L ++I+YHD  Y+    P I D+EYDAL RR   I  AFP L 
Sbjct: 1   MTIDAMTEADAANELMRLARQIAYHDRLYHTLDTPEIADAEYDALVRRNAEIEAAFPHLI 60

Query: 67  RSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R++ P+    K+G ++  S L KVTH +  +SL+  +  E++ +F  R+ RF     +  
Sbjct: 61  RADSPS---RKVGHDVAASPLSKVTHEVRMMSLDNAFTDEEVEEFAARVRRFLALPAEAE 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           +  T E KIDG   ++RYE G+ V AA RGDG  GEDV+A +  IP IP+ LS ++PE+ 
Sbjct: 118 VAMTAEDKIDGLSCSLRYEHGRLVRAATRGDGQVGEDVTANVAFIPDIPQHLSGDVPEVF 177

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           E+RGEVY++K DF ALN      G K +ANPRNAA+G LR+ + +   +R L F  HG G
Sbjct: 178 EIRGEVYMAKADFAALNVAQEEKGEKRFANPRNAAAGSLRQKDASVTASRPLRFLAHGWG 237

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             S + A+ QY+++Q +   G PV+  + +  T   ++++Y  +++ R  LPYDIDG+VY
Sbjct: 238 AHSGLPAQTQYDVMQVIAGWGVPVSPLLVRCATTADMLAHYRAIQAQRPDLPYDIDGVVY 297

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q++LG  A++PRW ++HKF  ++A T +  ID+Q+GRTG LTPV RL PV +G
Sbjct: 298 KVDRLDWQERLGFVAKAPRWGMAHKFPAERAETVVEAIDVQVGRTGKLTPVGRLRPVLVG 357

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TN TLHN D I  L            +RVGDRV+++RAG+VIP+VVD +  E   +
Sbjct: 358 GVTVTNVTLHNRDEIARL-----------GVRVGDRVVLQRAGDVIPQVVDNLTREEARE 406

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A  + FP  CP C S  V     + G++    RCTGGL C AQ+ ERLKHFVSR A +I+
Sbjct: 407 A--YVFPDHCPECGSEAV----AEEGEVDV--RCTGGLICPAQRTERLKHFVSRAALDID 458

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +  FF        +  PADIF L+ R+      I    G+ D SV NL  +I  
Sbjct: 459 GLGEKTIVEFFA----LGWLESPADIFRLKNRR----ADILGREGWKDKSVENLLMAIEA 510

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RR     R +F+LGIRHVG   AR L K +++  +         A + D    L+ +  V
Sbjct: 511 RRAPDAARLLFALGIRHVGQVTARDLMKRFVTLPDLRAVAERAHAGDEDARAELLGIDGV 570

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++ +A+ EF+  P N    + LL E+SP     E   +S +  K +VFTG L+ + R 
Sbjct: 571 GPVVVEALGEFFHEPHNRAVWDDLLSELSPPPYIVETR-ASVVAGKTVVFTGKLETMSRD 629

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           +A+     LGA  +  +S KTD+++ G   GSKL++A  LG+++++E  +
Sbjct: 630 EAKAQAEALGARAAGSVSAKTDLVVAGPGAGSKLKQAAALGIEVIDEAAW 679


>gi|240141492|ref|YP_002965972.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
 gi|240011469|gb|ACS42695.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
          Length = 814

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 259/621 (41%), Positives = 378/621 (60%), Gaps = 31/621 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +EALS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   FP L  +
Sbjct: 10  VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            + +     +G + +    KV H++P LSL   +  ED+ +F+ R+ RF     + ++ F
Sbjct: 70  TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEEAVAF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEV 187
           T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  LS  NIPE++EV
Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGENIPEVLEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  G+ 
Sbjct: 187 RGEVYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDIDG+VYKV
Sbjct: 247 SEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRTIEAERAGLGYDIDGVVYKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG 
Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++++R  DA 
Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIDKRPADAV 426

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+ F++EG 
Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 486

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTK-----------IE 525
           G+  ++  F+    A  ++ PAD+F L+          RR+  S  +            +
Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEPAPKKPTK 542

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                 D ++ NL  S++ RR I L RF+F+LGI  +G   A++LAK +         + 
Sbjct: 543 KKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAALA 602

Query: 586 NII-AHNNDDWLSLIRVPLVG 605
                    DWL L  +P +G
Sbjct: 603 AATREQAGQDWLELSALPRIG 623



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 73/117 (62%), Gaps = 1/117 (0%)

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G +   ++++F+  P N  AV ALL+EV  +        ++    K +VFTG+L+K+ R
Sbjct: 698 IGPVATDSLIQFFSEPHNDAAVRALLEEVG-TEPLATTTSAAAFAGKTVVFTGSLEKMTR 756

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A+    +LGA VS  +S KTD+++ G   GSKL+ A++ GVK+++E+ +L +L +
Sbjct: 757 SEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813


>gi|254564006|ref|YP_003071101.1| DNA ligase [Methylobacterium extorquens DM4]
 gi|254271284|emb|CAX27296.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens DM4]
          Length = 814

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 257/621 (41%), Positives = 378/621 (60%), Gaps = 31/621 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +EALS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   FP L  +
Sbjct: 10  VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            + +     +G + +    KV H++P LSL   +  ED+ +F+ R+ RF     + ++ F
Sbjct: 70  TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEEAVAF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEV 187
           T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  LS   IPE++EV
Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGEGIPEVLEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE+Y+S +DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  G+ 
Sbjct: 187 RGEIYLSHDDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDIDG+VYKV
Sbjct: 247 SEPFNDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDIDGVVYKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG 
Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++++R  DA 
Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVLDKRPADAV 426

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+ F++EG 
Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 486

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTK-----------IE 525
           G+  ++  F+    A  ++ PAD+F L+          RR+  S  +            +
Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRTEGEPAPKKPTK 542

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                 D ++ NL  S+  RR I L RF+F+LGI  +G   A++LAK +         ++
Sbjct: 543 KKGEEEDKAIKNLLASLEARRKIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAALS 602

Query: 586 NIIAHN-NDDWLSLIRVPLVG 605
                    DWL L  +P +G
Sbjct: 603 AATQEQAGQDWLELSALPRIG 623



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 73/117 (62%), Gaps = 5/117 (4%)

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           +G +   ++++F+  P N  AV ALL+EV   P +       ++    K +VFTG+L+K+
Sbjct: 698 IGPVATDSLIQFFSEPHNDAAVRALLEEVGTEPLVA---TTSAAAFAGKTVVFTGSLEKM 754

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A+    +LGA VS  +S KTD+++ G   GSKL+ A++ GVK+++E+ +L +L
Sbjct: 755 TRSEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVKVVSEDDWLAML 811


>gi|197105771|ref|YP_002131148.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1]
 gi|254781386|sp|B4RFE9|DNLJ_PHEZH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|196479191|gb|ACG78719.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1]
          Length = 692

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/713 (40%), Positives = 422/713 (59%), Gaps = 29/713 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E+L+  +A +EL+ L  EI+ HD  YY+   P I D+ YDAL+RR D +  AFP L R 
Sbjct: 4   VESLTEAEAAEELTRLADEIAAHDIRYYREDAPTISDAAYDALRRRNDELEAAFPHLIRE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  +IG         V H +P LSL+  ++  D  +F  R+ RF +   D  + +
Sbjct: 64  ---NSPSLRIGAARAEQFAPVEHGVPMLSLDNAFSDADALEFDARVKRFLRL--DEEVAY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
           T EPKIDG   +IRYE G+ V AA RGDG  GEDV+A +R I  IP+ L     PE+IE+
Sbjct: 119 TAEPKIDGLSCSIRYENGRLVRAATRGDGRVGEDVTANVRTIGEIPQKLHGQAWPEVIEI 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+   +F ALN+   + G+K YANPRNAA+G LR+++P     R L FF +  G  
Sbjct: 179 RGEVYLGHAEFAALNEAAASAGQKTYANPRNAAAGSLRQIDPKITAQRPLRFFAYAWGFV 238

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S  FA+ Q+E LQ ++  GF      R      G++  Y EM++ R  L +DIDG+VYKV
Sbjct: 239 SAPFAQTQWEALQALKAWGFRTTPQSRCVKGAEGLMEAYREMEAERPHLGFDIDGVVYKV 298

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q++LG  +R+PRW I+ KF  +QA T L  IDIQ+GRTG LTPVARL PV +GG 
Sbjct: 299 DRLEWQQRLGFVSRAPRWGIARKFPAEQARTVLEAIDIQVGRTGALTPVARLTPVTVGGV 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++TNATLHN D I  L           D+RVGD V+++RAG+VIP+++ +I  ER  D+ 
Sbjct: 359 VVTNATLHNADEIARL-----------DVRVGDTVVLQRAGDVIPQILRVIPEERPKDSV 407

Query: 427 PFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           P+ FP  CP   ++ VVR+    +G      RC+G  AC  Q++  L HFVSR AF+IEG
Sbjct: 408 PYDFPHVCPCPLRTEVVRETT-ASGAETVVRRCSGEFACPFQRINHLLHFVSRRAFDIEG 466

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++QL  FF+       I+ PADIF L  ++     ++  +   G+ SV NL  +I  R
Sbjct: 467 LGEKQLTAFFERG----WIKAPADIFRLHEKRD----ELLAMERMGETSVGNLLANIEAR 518

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I L+RFI+ LGIRH+G   A  +A+ Y +  +F + ++ + A + +    L  +  +G
Sbjct: 519 RTIGLDRFIYGLGIRHIGETTATVMARGYGTAAHFLEAMDKVAARDPEAVEELDALDQIG 578

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             + +A   F+    N   VE L  +++  +   +    + +  K +VFTG L+++ R +
Sbjct: 579 GAVIEAAAAFFGEDHNRAMVEDLAGQLT-ILDAEKPKTDTAVAGKTVVFTGALERMTRDE 637

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+    +LGA VS  +S+KTDI++ G   GSKL+ A +LG++++ E+++L ++
Sbjct: 638 AKAQAERLGAKVSGSVSKKTDIVVAGPGAGSKLKTAAELGIQVLTEDEWLEMV 690


>gi|148557620|ref|YP_001265202.1| DNA ligase, NAD-dependent [Sphingomonas wittichii RW1]
 gi|190359290|sp|A5VFJ8|DNLJ_SPHWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148502810|gb|ABQ71064.1| DNA ligase, NAD-dependent [Sphingomonas wittichii RW1]
          Length = 708

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/728 (39%), Positives = 422/728 (57%), Gaps = 62/728 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QA + L+ L  EI+ H+  Y+    P I D++YDAL R   A+   +P L R++ P+   
Sbjct: 6   QAAERLAFLAAEIARHNALYHGEDAPEISDADYDALMRENAALEAEYPHLVRADSPS--- 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G   +  L KV H+ P LSL+  +  ED+  F+ R+ R+     +  +  T EPKID
Sbjct: 63  KLVGAAPSGHLAKVAHAQPMLSLDNAFADEDVVDFVGRVRRYLSLGAEEPVALTAEPKID 122

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-----LNIPEIIEVRGE 190
           G   ++RYEKG  V AA RGDG +GEDV+A +R I  IP  L       + P++ E+RGE
Sbjct: 123 GLSCSLRYEKGVLVLAATRGDGTTGEDVTANVRTIDDIPERLRGGDLLSSPPDVFEIRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           VY++K DF ALN  ++A    P     +ANPRNAA+G LR+ +P    +R L F  HG G
Sbjct: 183 VYMAKADFAALNARLLAEAEDPAKARQFANPRNAAAGSLRQKDPGVTASRPLRFLAHGWG 242

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S + A  Q  ++  +   G PV++   + +     +S+Y  +++ R+ LP+DIDG+VY
Sbjct: 243 EVSALPADTQKGVMDAIAAWGLPVSDDFVRVDGAAQALSHYRAIEAKRADLPFDIDGVVY 302

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    QK+LG  AR+PRW I+HKF  ++A T L DIDIQ+GRTG LTPVARLEPV +G
Sbjct: 303 KVDRLDWQKRLGFVARAPRWAIAHKFPAEKAQTLLKDIDIQVGRTGKLTPVARLEPVTVG 362

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHN D I           G  D+  GDRV+V+RAG+VIP++V+ +  +   D
Sbjct: 363 GVVVTNATLHNADEI-----------GRLDVHPGDRVVVQRAGDVIPQIVENLSRDETRD 411

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             P+ FP  CP C S   R+     G++   +RCTGGL C AQ++ERL+HFVSR A +IE
Sbjct: 412 --PWPFPQTCPECGSAAERE----PGEV--DYRCTGGLICPAQRVERLRHFVSRHALDIE 463

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG   ++ FF+       ++ PADIF L +    +  +      + +VS  NL  +I+ 
Sbjct: 464 GLGLTHIESFFRD----GLVQSPADIFRLTKDILLTRER------WAEVSAGNLIAAIDA 513

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII---------------- 588
           +R+  L+RF+F+LGIRHVG   AR LA+ Y S++     I+  I                
Sbjct: 514 KRHPPLDRFLFALGIRHVGEVTARDLARRYRSWEGLKAMIDRTIEARDAAVQAIGETDEK 573

Query: 589 --AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
             A    +  +++  P VG  +A A+V+F+  P N  AV  LL ++ P+   HE   +SE
Sbjct: 574 FAARTAKELAAIVETPGVGPEVALALVDFFAEPHNADAVADLLSQLQPADVIHETR-ASE 632

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +VFTGTL+ + R +A+     LGA V+  +S KTD+++ G   GSKL+KA  LG+
Sbjct: 633 VSGKTVVFTGTLETMSRDEAKAQAEALGAKVAGSVSAKTDLVVAGPGAGSKLKKASDLGI 692

Query: 707 KIMNEEQF 714
            + +E  +
Sbjct: 693 AVTDEAGW 700


>gi|332188479|ref|ZP_08390201.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17]
 gi|332011491|gb|EGI53574.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17]
          Length = 712

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 295/719 (41%), Positives = 420/719 (58%), Gaps = 58/719 (8%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
           +EI++H+  Y+    P I D++YDAL RR  AI  AFP L RS+ PN    ++G      
Sbjct: 23  REIAHHNRLYHTEDAPEISDADYDALIRRNMAIEAAFPHLIRSDSPN---RQVGAAPAAH 79

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
           L KV H+ P  SL+  ++ E++ +FI R+ R+ +  DD  +  T EPKIDG   ++RY  
Sbjct: 80  LAKVAHARPMTSLDNAFSDEEVEEFIGRVRRYLKLPDDEPVTLTAEPKIDGLSCSLRYVD 139

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--- 202
           G+ V A  RGDG  GEDV+  +R I  IP+ L    P + EVRGEVY+SK DF ALN   
Sbjct: 140 GRLVQALTRGDGTIGEDVTENVRTIADIPQSLPAPAPTVFEVRGEVYMSKVDFTALNARL 199

Query: 203 -DEMIAVGR--KPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM 257
             E    G+  + +ANPRNAA+G LR+ NP  IT  R L F  HG G+ SE+ A+ Q++M
Sbjct: 200 AQEAAETGKEARQFANPRNAAAGSLRQKNPA-ITAGRPLRFLAHGWGEASEVPAETQFDM 258

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           ++  R  GFP+     +       ++ Y  +++ R+ LP+DIDG+VYKVD    Q +LG 
Sbjct: 259 VETWRRWGFPIAEAFARVPDAAAALAVYRTIEAQRADLPFDIDGVVYKVDRLDWQARLGI 318

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             R+PRW I+HKF  ++A T L  IDIQ+GRTG LTPVARLE V +GG ++TNATLHN D
Sbjct: 319 VGRTPRWAIAHKFPAERAQTTLERIDIQVGRTGALTPVARLEAVTVGGVVVTNATLHNAD 378

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+ L            +R GDRV+++RAG+VIP++V+ +   RH   +PF FP  CP C
Sbjct: 379 EIERL-----------GVRPGDRVVLQRAGDVIPQIVENLT--RHVAREPFVFPDHCPEC 425

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S   R      G++V   RCTGGL C AQ++ERL HFVSR AF+I GLG  +++ FF+ 
Sbjct: 426 GSLATR----GEGEVVI--RCTGGLICPAQRVERLIHFVSRHAFDITGLGLVRVEEFFRD 479

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I  PADIF L + ++    +        ++ V  L  +I+ RR+ISL+RF+F+L
Sbjct: 480 G----LIASPADIFRLAQHREALIQRER----MSELVVDKLLAAIDARRDISLDRFLFAL 531

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL------------------I 599
           GIRHVG   AR LA+ ++S   F   I+  +    +   +L                  I
Sbjct: 532 GIRHVGEITARDLARRFVSMAGFRAMIDAALQVRAETVPALGEPERKFELRRQRAIVAAI 591

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
             P +G  +A A+++F+    N   V+ LL EV+P+   H+    S++  K LVFTGTL+
Sbjct: 592 DTPQIGPEVADALLDFFAEEHNRDVVDDLLSEVTPADVVHQTR-ESDVSGKTLVFTGTLE 650

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + R +A+     LGA VS  +S KTD++I G   GSKL+KAQ LG+ +++E  +  L+
Sbjct: 651 TLSRDEAKAQAEALGARVSGSVSAKTDLVIAGPGAGSKLKKAQDLGIPVIDEAAWNALV 709


>gi|188584367|ref|YP_001927812.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001]
 gi|254781367|sp|B1Z9P1|DNLJ_METPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|179347865|gb|ACB83277.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001]
          Length = 814

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/621 (41%), Positives = 377/621 (60%), Gaps = 31/621 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E+LS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   FP L  +
Sbjct: 10  VESLSEDAAQARHAELSRAIERANHLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            + +     +G + +    KV H++P LSL   +  ED+ +F+ R+ RF     +  + F
Sbjct: 70  TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLTAEEPVAF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEV 187
           T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  LS  +IPE++EV
Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVEDIPATLSGKDIPEVLEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF  +N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  G+ 
Sbjct: 187 RGEVYLSHEDFAGINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDIDG+VYKV
Sbjct: 247 SEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDIDGVVYKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG 
Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV+D+++++R  DA 
Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVMDVVLDKRPADAV 426

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+ F++EG 
Sbjct: 427 PYVFPETCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 486

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTK-----------IE 525
           G+  ++  F+    A  ++ PAD+F L+          RR+  S  +            +
Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEPAPKKPTK 542

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                 D ++ NL  S+  RR I+L RF+F+LGI  +G   A++LAK +         + 
Sbjct: 543 KKGEEEDKAIKNLLASLEARRKIALNRFLFALGIPQIGESTAKALAKRFPDMPALMAALE 602

Query: 586 NII-AHNNDDWLSLIRVPLVG 605
                    DWL L  +P +G
Sbjct: 603 AATREQAGRDWLELSALPRIG 623



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 73/117 (62%), Gaps = 1/117 (0%)

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G +   ++++F+  P N  AV ALL+EV  +        ++    K +VFTGTL+K+ R
Sbjct: 698 IGPVATDSLIQFFSEPHNDAAVRALLEEVG-TEPLAATTSAAAFAGKTVVFTGTLEKMTR 756

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A+    +LGA VS  +S KTD+++ G   GSKL+ A++ GVK+++E+ +L +L +
Sbjct: 757 SEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAERHGVKVVSEDDWLAMLAE 813


>gi|89069525|ref|ZP_01156869.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516]
 gi|89044860|gb|EAR50950.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516]
          Length = 739

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 290/726 (39%), Positives = 422/726 (58%), Gaps = 66/726 (9%)

Query: 41  PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100
           PI+ D+ YDALKRR  A+   FP+L R++ P G   ++G        KVTH +  LSL  
Sbjct: 30  PIMDDAAYDALKRRNAALEARFPELMRADSPTG---QVGAAPAAGFGKVTHRVRMLSLLN 86

Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160
            +   D+R F   + R+     D  + +T EPKIDG  +++RYE G+ V AA RGDG +G
Sbjct: 87  AFEEADIRDFDDGVRRYLGLAADAPLRYTAEPKIDGLSLSLRYEDGRLVQAATRGDGTTG 146

Query: 161 EDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
           E+V+   R I  IP  L    P+++EVRGEVY+S  DF ALN        K +ANPRNAA
Sbjct: 147 ENVTDNARTIDDIPDRLE-GAPDVLEVRGEVYMSHADFAALNARQSEAAGKTFANPRNAA 205

Query: 221 SGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278
           +G LR+L+P +ITR   L FF +  G+ S   A+ Q   ++++  LGF VN   R  +  
Sbjct: 206 AGSLRQLDP-EITRARPLRFFAYAWGELSAPLAETQMGAIERLGALGFQVNPLTRLCDGP 264

Query: 279 HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTR 338
             ++++Y  +++ R+TL YDIDG+VYKVD+ +LQ +LG R+ +PRW  +HKF  + A TR
Sbjct: 265 DKMIAHYRAIEAQRATLGYDIDGVVYKVDDLALQSRLGFRSTTPRWATAHKFPAELAWTR 324

Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398
           L  I+IQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G  ASG  +RGG+DIR G
Sbjct: 325 LERIEIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAGRAASGDEIRGGKDIREG 384

Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           D V V RAG+VIPKV D+ + +R  DA P+ FP  CP C S  VR+         A  RC
Sbjct: 385 DWVQVYRAGDVIPKVADVDLAQRPADAAPYVFPETCPECGSEAVREEGD------AVRRC 438

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           TGGL C AQ +E+LKHFVSR AF+IEGLG +Q++ F+  E     I  PADIFTL+ R  
Sbjct: 439 TGGLVCPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFYHDE----WITEPADIFTLRDRYG 494

Query: 519 TST-TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
               T+++N  G+G+ S  NL+D+I +RR I+L R +F+LGIRHVG   A  LA+++ ++
Sbjct: 495 PGKLTQLKNREGWGEKSAENLFDAIEERRTIALARLVFALGIRHVGEVAASDLARHFSTW 554

Query: 578 QNFAQEINNI-----------------------------IAHNND--------------D 594
           +     ++                               +A   D               
Sbjct: 555 EALVATVDAAAPAAHRVQAAEAALLAERAAARDEGRRARLAEVRDRVWAEPPLPEGARAA 614

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK--EVSPSIGRHEKNVSSEIENKKL 652
           W  ++ +  +G  +A+++V          +++ L     + P+    +    S +  K +
Sbjct: 615 WDEIVGIEGIGATVARSLVLTMAQEAERASIDRLAAGLTIEPA---EQVATDSPVAGKTI 671

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTG+L+K+ R +A+     LGA VS  +S KTD+++ G   GSK +KA +LG++ ++E+
Sbjct: 672 VFTGSLEKMTRAEAKARAEALGAKVSGSVSAKTDLVVAGPGAGSKGKKAAELGIETIDED 731

Query: 713 QFLFLL 718
            +L L+
Sbjct: 732 AWLALI 737


>gi|118581474|ref|YP_902724.1| DNA ligase, NAD-dependent [Pelobacter propionicus DSM 2379]
 gi|166216225|sp|A1ATJ6|DNLJ_PELPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118504184|gb|ABL00667.1| DNA ligase, NAD-dependent [Pelobacter propionicus DSM 2379]
          Length = 704

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/715 (38%), Positives = 422/715 (59%), Gaps = 44/715 (6%)

Query: 21  LSSLEQEISYHDDCYYQYSKP--IILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +  L Q I++++  YY+   P   I D EYD L +    +   FP+    +  + P   +
Sbjct: 18  IQELRQLIAHNNRLYYENIPPRREIHDYEYDELFKELQELESRFPEF---QSADSPTQIV 74

Query: 79  GGEMNLSLFKVTHSIPTLSLEK---IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           GG ++    KV HS+P LS+E       + ++R  I  +     K D  SI    EPKID
Sbjct: 75  GGSVSEGFKKVQHSVPMLSIENKPVTKMLSEVRSIIKEL-----KDDAISIDIVAEPKID 129

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G   +IRYEK + V AA RGDG  GED++  + +I  IP++L L+ PE+IE+RGEVY+S 
Sbjct: 130 GLSCSIRYEKHQLVRAATRGDGLEGEDITVNVHSISEIPKILPLDAPEVIEIRGEVYMSN 189

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           +DF     +   +G KP  NPRNAA+G LR+L+P+   +R L FF +  G+ S  FAK Q
Sbjct: 190 SDFKQYTAQQNKIGEKPPENPRNAAAGSLRQLDPSVTASRPLRFFAYAWGEISNSFAKSQ 249

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++ LQ +R  GF V + +R   +   + SY+ EM+  RS L + IDG+VYK++  SLQ++
Sbjct: 250 WDALQTLRGWGFKVCDDIRLLYSSDELNSYFEEMQERRSELDFTIDGIVYKLNSLSLQER 309

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G+  R+PRW  + KF  ++  T L +I I +GR+G LTPVA L PV + G  ++NATLH
Sbjct: 310 VGQTNRAPRWAAAQKFPPEKRETLLQNITISVGRSGALTPVAELLPVRLLGTTVSNATLH 369

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D ++            +D R+ D ++V+RAG+VIP+VV +++ +R   + PF FPS C
Sbjct: 370 NQDEVEC-----------KDFRIDDTIVVQRAGDVIPQVVSVVIEKRLSGSIPFVFPSAC 418

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S+ VR+  P+     A  +CTGGL C AQ LERLKHFVSRDAFNI+GLG++ ++ F
Sbjct: 419 PVCGSKAVRE--PRE----AVWKCTGGLTCPAQSLERLKHFVSRDAFNIDGLGEKNIELF 472

Query: 495 FKSEDPAFSIRIPADIFTLQR--------RQQTSTTK-IENILGFGDVSVTNLYDSINKR 545
           +        +  P DIF L+         +Q+ S  K ++   G+G++S  NL+ +I  +
Sbjct: 473 YNKG----LLASPVDIFRLEEILSPPLLWQQKPSEFKPLQEWDGWGELSANNLFRAIRTK 528

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           + I+L RFI++LGI  VG   A+ LA  Y+S  N+   +       ++ +  LI +  +G
Sbjct: 529 QKITLYRFIYALGIPKVGEVTAKILADNYVSLDNWQSSMLKAAERESECYQHLISIDGIG 588

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++A  IV F+    NI  +++L   +S         +SS I  K +VFTG L+K  R  
Sbjct: 589 SVVADEIVSFFAEAHNIQVLDSLKNYLSVEDFTKPAIISSNISGKIVVFTGELEKRSRKA 648

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+    + GA V+  +SRKTDI+I G +PGSKL KAQ+LG+KI++E+++  L+ +
Sbjct: 649 AKIEAEKFGAKVATDVSRKTDIVIAGTDPGSKLRKAQELGIKILSEDEWEHLINE 703


>gi|218532981|ref|YP_002423797.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4]
 gi|254781363|sp|B7KU78|DNLJ_METC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218525284|gb|ACK85869.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4]
          Length = 814

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/621 (41%), Positives = 375/621 (60%), Gaps = 31/621 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +EALS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   FP L  +
Sbjct: 10  VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            + +     +G + +    KV H++P LSL   +  ED+ +F+ R+ RF     + ++ F
Sbjct: 70  TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEEAVAF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEV 187
           T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  LS   IPE++EV
Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGEGIPEVLEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE+Y+S  DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  G+ 
Sbjct: 187 RGEIYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDIDG+VYKV
Sbjct: 247 SEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDIDGVVYKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG 
Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++ +R  DA 
Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIEKRPADAV 426

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+  ++EG 
Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGLDLEGF 486

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTK-----------IE 525
           G+  ++  F+    A  ++ PAD+F L+          RR+  S  +            +
Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRTEGEPAPKKPTK 542

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                 D ++ NL  S++ RR I L RF+F+LGI  +G   A++LAK +         + 
Sbjct: 543 KKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAALA 602

Query: 586 NII-AHNNDDWLSLIRVPLVG 605
                    DWL L  +P +G
Sbjct: 603 AATREQAGRDWLELSALPRIG 623



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 73/117 (62%), Gaps = 1/117 (0%)

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G +   ++++F+  P N  AV ALL+EV  +        ++    K +VFTG+L+K+ R
Sbjct: 698 IGPVATDSLIQFFSEPHNDAAVRALLEEVG-TEPLAATTSAAAFAGKTVVFTGSLEKMTR 756

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A+    +LGA VS  +S KTD+++ G   GSKL+ A++ GVK+++E+ +L +L +
Sbjct: 757 SEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813


>gi|315498681|ref|YP_004087485.1| DNA ligase, nad-dependent [Asticcacaulis excentricus CB 48]
 gi|315416693|gb|ADU13334.1| DNA ligase, NAD-dependent [Asticcacaulis excentricus CB 48]
          Length = 697

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 290/708 (40%), Positives = 416/708 (58%), Gaps = 24/708 (3%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A+   + L  EI +H D YY    P + D+EYDAL++   A+   +PDL   + P   
Sbjct: 7   DTAQTRHAQLSTEIKHHRDLYYNQEAPELTDAEYDALEQELRALEAQYPDLHTVDSPT-- 64

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G E++     V H +P LSL+  +  ED+  F   I RF +   +  + F +EPKI
Sbjct: 65  -EQVGAEISSKFAPVQHGVPMLSLDNAFAPEDVADFEKSIRRFLRLPPEEELAFAVEPKI 123

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYI 193
           DG   ++ Y  GK V AA RGDG +GED++  +R I  +P VLS  + PE IE+RGEVY 
Sbjct: 124 DGLSCSLLYVNGKLVRAATRGDGRTGEDITENVRTIKDVPHVLSGRDHPERIEIRGEVYY 183

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251
              DF A+N +    G K +ANPRNAASG LR+L+ T   +R L FF +  G+ S+  F 
Sbjct: 184 PLADFAAMNAKSAEEGGKVFANPRNAASGALRQLDATITASRPLRFFAYTWGEVSDPRFV 243

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E L K    GF VN          G++  Y  ++  RS+L YDIDG+VYKVD    
Sbjct: 244 TTQTEALAKFHEWGFQVNPRSATTENSDGLLKIYEAIQRDRSSLGYDIDGVVYKVDRLDY 303

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +RSPRW I+HKF  +QA T L  IDIQ+GR G LTPVARLEPVN+GG +++N 
Sbjct: 304 QRRLGFVSRSPRWAIAHKFPAEQALTHLKAIDIQVGRIGTLTPVARLEPVNVGGVVVSNV 363

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I             +DIR+GD V V+RAG+VIP++V + ++ER    +P+ FP
Sbjct: 364 TLHNADEI-----------ARKDIRIGDLVRVQRAGDVIPQIVGVELSERQEGTEPYVFP 412

Query: 432 SFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           + CP   ++ V R+LN K G+   A RC+G  AC  Q++E LK+ VSR   +IEGLG++Q
Sbjct: 413 TVCPCPLKTAVARELNLK-GEEGVARRCSGEHACPHQRVEYLKYVVSRKVLDIEGLGEKQ 471

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L  F  SE+    IR PADIFTL+ R +TS T + N  G G+ S  NL+ +I  RR + L
Sbjct: 472 LQKF--SEEGL--IREPADIFTLEARDKTSLTPLRNREGMGETSARNLFKAIEDRRQLPL 527

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFI +LG++ VG   AR LA+ Y S   F   +  + A + +   +L  +  VG  +  
Sbjct: 528 DRFIAALGVKGVGETTARLLARAYHSESTFRDAMIALAAGDEEVKAALDNMDQVGPSLVA 587

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           A++EF+ N  N+      + ++S           S +  K +VFTGTL+K+ R +A+   
Sbjct: 588 ALIEFFSNDHNVGIYMRFVAQLSVQDAEAVAG-DSAVSGKTVVFTGTLEKMTRDEAKAQA 646

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +LGA V+  +S KT I++ G   GSKL+KA +LGV++M E+++L  +
Sbjct: 647 ERLGAKVAGSVSAKTHIVVAGPGAGSKLKKAAELGVQVMTEDEWLAFI 694


>gi|56696562|ref|YP_166919.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3]
 gi|81349987|sp|Q5LST6|DNLJ_SILPO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56678299|gb|AAV94965.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3]
          Length = 739

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 291/749 (38%), Positives = 431/749 (57%), Gaps = 61/749 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A +EL+ L   ++  +  Y+    P I D++YDALK+R   I   FP L R   P+ P 
Sbjct: 5   EAAQELARLAGLLAQANLAYHTLDAPEISDADYDALKQRNAEIEARFPHLKR---PDSPS 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G        KV+H++  +SL   ++  D+  F   I ++     + ++ +T EPKID
Sbjct: 62  EQVGARPGEGFSKVSHAVRMMSLGNAFDDADVADFDRSIRKYLGLDVETALAYTAEPKID 121

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++RYE+G  V AA RGDG  GE+V+A  R I  IP  +    PE++EVRGEVY+S 
Sbjct: 122 GLSLSLRYEQGVLVQAATRGDGEVGENVTANARTIADIPARIE-GAPEVLEVRGEVYMSH 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKG 253
            DF ALN    A G K +ANPRNAA+G LR+L+   ITR   L FF +  G+ SE  A+ 
Sbjct: 181 ADFAALNTRQEAEGGKLFANPRNAAAGSLRQLDAA-ITRARPLRFFAYSWGELSEPLAET 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + ++++  LGF  N   R+      ++++Y ++++ R+TL YDIDG+VYK+D+  LQ 
Sbjct: 240 QMQAIERLAGLGFQTNPLTRRCADLDAMIAHYRDIEAQRATLGYDIDGVVYKLDDLGLQA 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG +++NATL
Sbjct: 300 RLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNATL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNEDYI G D+ G+ +R G+DIRVGD V V RAG+VIPK+ D+ +N+R   A PF FP  
Sbjct: 360 HNEDYIAGRDSRGQEIRDGKDIRVGDWVQVYRAGDVIPKIADVDLNKRPEGANPFEFPEQ 419

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S  +R+         A  RCTGG+ C AQ +E+LKHFVSR AF+IEGLG +Q++ 
Sbjct: 420 CPECGSPAIREEGD------AVRRCTGGVICPAQAVEKLKHFVSRAAFDIEGLGAKQVEQ 473

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F         IR PADIF L+ R      +++N  G+G+ S TNL+ +I+ +R I L R 
Sbjct: 474 FHAD----GWIREPADIFELRSRYGEGLQQLKNREGWGEKSATNLFQAIDDKRRIPLARL 529

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN--------------------------- 586
           IF+LGIRHVG   A+ L+ +Y  +   A  ++                            
Sbjct: 530 IFALGIRHVGEVGAKDLSLHYRDWDAMAAALDTARLAALAHRAADTAEEQERQQAQAEGR 589

Query: 587 ----------IIAHNN------DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
                     +IA           W  LI V  +G  +  ++ + + N     A + L  
Sbjct: 590 RARISDTRAAVIAAQEVPPEAAAAWADLIGVDGIGATLGLSLSDAFANGDERAAFDRLSA 649

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++  I        S +  K +VFTG+L+K+ R +A+     LGA V+  +S+KTD+++ 
Sbjct: 650 HLT-VIPPDAPARDSPVAGKTVVFTGSLEKMTRAEAKARAEALGAKVAGSVSKKTDLLVA 708

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   GSKL+ A+ LG++ ++E+ +L L++
Sbjct: 709 GPGAGSKLKTAESLGIETLDEDGWLKLIE 737


>gi|85708859|ref|ZP_01039925.1| DNA ligase [Erythrobacter sp. NAP1]
 gi|85690393|gb|EAQ30396.1| DNA ligase [Erythrobacter sp. NAP1]
          Length = 698

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 274/707 (38%), Positives = 407/707 (57%), Gaps = 35/707 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+  +S   A  EL  L ++I++HD  Y+    P I D EYDAL RR   +  AFP L R
Sbjct: 13  PVSQMSEADAANELMRLAKQIAHHDRLYHADDDPEISDQEYDALVRRNRELEEAFPQLVR 72

Query: 68  SEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
            + P+    ++G  +  S L KVTH +  +SL+  +N E++  +  RI R+     D  +
Sbjct: 73  EDSPS---KRVGHAVAASPLSKVTHEVRMMSLDNAFNREEVEDWTARIRRYLNLDADEEV 129

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T E KIDG   ++RYE GK + AA RGDG  GEDV+  +  I  IP+ L   +PE+ E
Sbjct: 130 AITAEDKIDGLSCSLRYENGKLMRAATRGDGQVGEDVTPNVGYISDIPQELPDGVPEVFE 189

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S+ DF ALN      G K +ANPRNAA+G LR+ + +    R L F+ +G G 
Sbjct: 190 VRGEVYMSRADFAALNTAQEEAGGKLFANPRNAAAGSLRQKDASVTAKRPLKFWAYGWGA 249

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S++  + Q +M++ +   GFP++  + +  +   ++++Y E+   R  L Y+IDG+VYK
Sbjct: 250 ASDVPCESQNDMMRMIESWGFPLSPFLTRTMSVDEMIAHYEEIGRQRPDLGYEIDGVVYK 309

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    Q++LG  A++PRW ++HKF  ++A T L  IDIQ+GRTG LTPV RL PV +GG
Sbjct: 310 VDRLDWQQRLGFVAKAPRWALAHKFPAEKAQTTLEAIDIQVGRTGKLTPVGRLAPVLVGG 369

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +TN TLHN D I+ L            +R GDR++++RAG+VIP+VV+ +   R  + 
Sbjct: 370 VTVTNVTLHNRDEIERL-----------GVRPGDRIVIQRAGDVIPQVVENLT--RDEER 416

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF FP  CP C S  V     + G++    RCTGGL C AQ+ +RL+HFVSR A +I+G
Sbjct: 417 EPFVFPDHCPECDSEAV----AEEGEVDV--RCTGGLICPAQRTQRLEHFVSRKALDIDG 470

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
            G + +  FF        +  PADIF L+ R++     I  + G+ D SV NL  S+  R
Sbjct: 471 FGSKTIAQFFA----LGWLESPADIFRLKDRRE----DILALEGWQDKSVDNLLASVENR 522

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     R +F LGIRHVG   AR L K+               A + D    L  +  +G
Sbjct: 523 REPDAARLLFGLGIRHVGEVTARDLLKHVHELPALRTIAEKARAGDEDAASELTAIDGIG 582

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRH 664
             + +A+ +F+  P N+   E +L EV+P   R+E + + S +  K +VFTG L+ + R 
Sbjct: 583 PSVVEALGDFFHEPHNVAVWEDILSEVTPP--RYEVETLDSPVAGKTVVFTGKLETMSRD 640

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +A+    +LGA  +  +S KTD+++ G   GSKL+KA+QLG+++++E
Sbjct: 641 EAKAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKKAEQLGIEVVDE 687


>gi|296116447|ref|ZP_06835061.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977040|gb|EFG83804.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769]
          Length = 709

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 280/704 (39%), Positives = 414/704 (58%), Gaps = 35/704 (4%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  QA  EL+ L   I+  D  Y+Q   PI+ D+ YDAL+RR   +  A P   R + P
Sbjct: 24  MSASQAASELALLADVIAQLDRAYHQDDAPIVTDAVYDALRRRNSELEQAHPRERRDDSP 83

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFT 129
           +    ++G   + +  +  H  P LSL+ +++ E+   FI+R  RF    D  +  + F 
Sbjct: 84  D---TRVGAAPSGAFRRHRHLTPMLSLDNVFSREEFEGFISRAARFLGLDDAQATQLDFV 140

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            EPKIDG  I++ YE   FV    RGDG  GEDV+A +R +  +P+ L    P++IE+RG
Sbjct: 141 AEPKIDGLSISLTYENRHFVRGTTRGDGTEGEDVTANLRTLRNMPQQLHGPAPDLIEIRG 200

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTS 247
           EV+++K+DFL LN   +A G+KP+ANPRNAA+G LR+L+  +ITR   L+ F + +G  S
Sbjct: 201 EVFLAKSDFLTLNAAQVAAGQKPFANPRNAAAGSLRQLD-AEITRQRPLSLFAYAVGYCS 259

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A      L+++   GF V+    +        ++   +   RS L YDIDG+VYK++
Sbjct: 260 APVADTHDLYLRQLGEWGFAVSPLCTRVANEAEAEAFMERIARERSALDYDIDGVVYKIN 319

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E +LQ++LG   R+PRW ++ KFA +QA TRL  IDIQ+GRTG LTPVA LEPVN+GG +
Sbjct: 320 ERALQERLGFAGRAPRWAVAWKFAAEQAITRLTKIDIQVGRTGALTPVAILEPVNVGGVI 379

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +T A+LHNED         +++R  +D++ GD V ++RAG+VIP+V+D+++   H    P
Sbjct: 380 VTRASLHNED---------EIVR--KDVQEGDLVRIQRAGDVIPQVLDVVLPRDH-SPHP 427

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C +   R      G++V   RC+GGL C AQ +ERL HFVSRDAF+IEGLG
Sbjct: 428 FVFPHVCPVCHAHAER----PEGEVV--WRCSGGLTCPAQLVERLIHFVSRDAFDIEGLG 481

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +  F         +  PADIF L   ++    +     G+G +S  NL ++I  RR 
Sbjct: 482 DRTIAEFHADG----LLGTPADIFHLPTHEEAIAVRP----GWGTLSARNLMNAIAARRT 533

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           ISL RFI++LGIR +G   AR LA++Y SY N+ Q++       +D+ L L  +  +G  
Sbjct: 534 ISLSRFIYALGIRRIGINTARLLARHYGSYDNWHQQMLRATTVGSDERLELGSITGIGTA 593

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA  +V F+    N   +E  L  V  +I   E   + E+  K +VFTGTL  + R +A+
Sbjct: 594 IADELVAFFIEAHNRQTLED-LTHVLEAITDEEMLAAGELSGKVIVFTGTLTTMSRPEAR 652

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
               ++GA VS  +SRKTDI+++G+  GSK  KA +L +  ++E
Sbjct: 653 AIAERMGARVSDSVSRKTDIVVLGEKAGSKARKAAELNLHTVDE 696


>gi|149184723|ref|ZP_01863041.1| DNA ligase [Erythrobacter sp. SD-21]
 gi|148832043|gb|EDL50476.1| DNA ligase [Erythrobacter sp. SD-21]
          Length = 690

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 276/707 (39%), Positives = 405/707 (57%), Gaps = 33/707 (4%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A  EL  L + I+ H+  Y+    P I D E+DAL RR   +   FP L R + P+   
Sbjct: 13  EAANELMRLARAIAKHNKLYHAEDAPEITDQEFDALVRRNAELEEQFPHLVREDSPS--- 69

Query: 76  NKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +G E+  S L KVTH +  +SL+  ++ E++ +++ R+ RF    +   +  T E KI
Sbjct: 70  KVVGHEIAASPLSKVTHEVRMMSLDNAFSGEEVAEWVARVRRFLSLDESEEVAITAEDKI 129

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG   ++RYEKG+ V AA RGDG  GEDV+  I  I  IP+ LS ++PE+ E+RGEVY++
Sbjct: 130 DGLSCSLRYEKGRLVRAATRGDGQVGEDVTPNIAHIADIPQQLSGDVPEVFEIRGEVYMA 189

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K DF ALN      G K +ANPRNAA+G LR+ + +    R L F+ HG G  S +    
Sbjct: 190 KADFSALNAAQEDAGGKLFANPRNAAAGSLRQKDASVTAKRPLRFWAHGWGAASAVPGAT 249

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q E+++++   G PV+    + +    ++++Y ++   R  LPY+IDG+VYKVD    Q+
Sbjct: 250 QEEVVRQIENWGVPVSPLFTRVHDVEAMLAHYAKIAKERPDLPYEIDGVVYKVDRLDYQQ 309

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A++PRW ++HKF  +QA T L  IDIQ+GRTG LTPV RL PV +GG  +TN TL
Sbjct: 310 RLGFVAKAPRWALAHKFPAEQAETTLEAIDIQVGRTGKLTPVGRLAPVLVGGVTVTNVTL 369

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L            +R GDRV+V+RAG+VIP++VD +   R    +PF+FP  
Sbjct: 370 HNRDEIARL-----------GVRPGDRVVVQRAGDVIPQLVDNLT--RETSREPFAFPDH 416

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S  V +     G++    RCTGGL C AQ+ ERLKHFVSR A +I+GLG++ +D 
Sbjct: 417 CPECGSEAVAE----EGEVDV--RCTGGLICPAQRTERLKHFVSRGALDIDGLGEKTIDQ 470

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           FF        +  PADIF L +R+      I  + G+ + SV  L DSI  RR     R 
Sbjct: 471 FFA----LGWLESPADIFHLHQRRDA----ILALEGWQERSVDKLVDSIEARRAPDAARL 522

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIRHVGA  AR L K++       +      A + +   SL  +  +G  + +A+ 
Sbjct: 523 LFGLGIRHVGAVTARDLMKHFHELPALREAAEAAHAGDEEAAASLTSIDGIGGAVVEALG 582

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +F+    N    + ++ EV+P     E    S +  K +VFTG L+ + R +A+    +L
Sbjct: 583 DFFHEDHNKAVWDDIISEVTPPPYIVETK-ESPVSGKTVVFTGKLETMSRDEAKAQAERL 641

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           GA  S  +S KTD+++ G   GSKL+KA  LG+K+++E  +  ++ +
Sbjct: 642 GAKASGSVSAKTDLLVAGPGAGSKLKKAADLGIKVIDEAGWAKIVAE 688


>gi|34581289|ref|ZP_00142769.1| DNA ligase [Rickettsia sibirica 246]
 gi|28262674|gb|EAA26178.1| DNA ligase [Rickettsia sibirica 246]
          Length = 689

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 276/712 (38%), Positives = 424/712 (59%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  +  N+PE +EVR
Sbjct: 120 -CEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKID-NVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEI-----------ARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++     P+   +    RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKL--HYTPEDIII----RCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F     D    I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLI---DKGL-ISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++  L E+       E    S + +K +VFTG+L  + R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKK-LGEILNIEDYKETREQSSLMDKIVVFTGSLPTMSRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++VG + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVVGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|170746461|ref|YP_001752721.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831]
 gi|254781368|sp|B1M575|DNLJ_METRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|170652983|gb|ACB22038.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831]
          Length = 810

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 258/620 (41%), Positives = 369/620 (59%), Gaps = 33/620 (5%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+ E+AR E + L   I   D  YYQ   P I D+EYD L+RR + I   FPDLA +   
Sbjct: 13  LTAEEARAEYARLSDAILEADRLYYQEDAPEISDAEYDRLRRRLEDIEARFPDLAGT--- 69

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                 +G + +    KV H++P LSL   ++  ++ +F+ R+ RF    DD  + FT E
Sbjct: 70  GAASTSVGAKPSEKFAKVRHAVPMLSLGNAFDDAEVAEFVARVRRFLGWSDDTPLAFTAE 129

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190
           PKIDG  +++RY  G+   AA RGDG  GE+V+A  R +  IP VL+    PEI EVRGE
Sbjct: 130 PKIDGLSLSLRYVNGRLDTAATRGDGEVGENVTANARTVQDIPAVLAGAGWPEICEVRGE 189

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+S  DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  G+ S  
Sbjct: 190 VYLSHADFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGELSAP 249

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A+ Q  +L++    G PVN           ++++Y  +++ R+ L YDIDG+VYKVD+ 
Sbjct: 250 IAETQTGVLEQFATWGLPVNPRTETFTDTAAMLAHYRRIEADRAGLGYDIDGVVYKVDDL 309

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQK+LG  +RSPRW ++HKFA ++A+T + DI I +GRTG L P+A+L PV +GG +++
Sbjct: 310 ALQKRLGFVSRSPRWALAHKFAAQEATTVVEDIVINVGRTGSLNPLAKLRPVTVGGVVVS 369

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNE Y+KG+ A G+ +R GRDIRVGD V V RAG+VIPKV+D+ + +R  D++P++
Sbjct: 370 NATLHNEGYVKGVGADGEPIRDGRDIRVGDTVTVVRAGDVIPKVMDVDLTKRPADSRPYA 429

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP C SR VR +NP+TG+  A  RCTGGL C AQ +ER+KHFVSR+ F+IEG G+ 
Sbjct: 430 FPESCPACGSRAVRAINPRTGRPDAVRRCTGGLICPAQGVERMKHFVSRNGFDIEGFGET 489

Query: 490 QLDFFFKSEDPAFSIRIPADIFTL------------------QRRQQTSTTKIENILGFG 531
            ++  F+    A  +R PAD+F L                  +RR ++ T +        
Sbjct: 490 YIEVLFE----AGLVRQPADLFRLDFEELKAAIVARREALSAERRAESGTAEPPKKAAKK 545

Query: 532 -----DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEIN 585
                D ++ NL  ++  RR + + R +F+LGI  +G   A++LAK +       A    
Sbjct: 546 KGDEDDKAIKNLLAAVEARRAVPMNRLLFALGIPQIGEATAKALAKRFADMPTLIAAIRE 605

Query: 586 NIIAHNNDDWLSLIRVPLVG 605
              A    DW+ L  VP VG
Sbjct: 606 AAAAQPGPDWVELTAVPRVG 625



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G +   A++ F+  P N  AV ALL  V+          +S    K +VFTG L+K+ R
Sbjct: 694 IGPVATDALLLFFSEPHNADAVTALLDAVAVQP-MERAAAASTFAGKTVVFTGALEKMTR 752

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++A+    +LGA VS  +S KTD+++ G   GSKL+ AQ+ GV++++E+ +L ++ Q
Sbjct: 753 NEAKAVAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAQKHGVRVVSEDDWLAMVAQ 809


>gi|67458584|ref|YP_246208.1| NAD-dependent DNA ligase LigA [Rickettsia felis URRWXCal2]
 gi|67004117|gb|AAY61043.1| DNA ligase, NAD-dependent [Rickettsia felis URRWXCal2]
          Length = 706

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 275/694 (39%), Positives = 412/694 (59%), Gaps = 29/694 (4%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           +I+ ++  YY    P++ DSEYD L      +   FP L      N P  KIG ++    
Sbjct: 39  KIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLVLE---NSPSKKIGAKITNKF 95

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
            K+TH IP LSL   ++ +D+R F+ RI  F +  +   IF   EPKIDG   +  Y+ G
Sbjct: 96  AKITHQIPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPIF--CEPKIDGLSFSAIYKNG 153

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
                A RGDG+ GED++A I+ I   P  +  N PE +EVRGE+YI K DFL LN E  
Sbjct: 154 LLTTGATRGDGYVGEDITANIKTIKNFPHKID-NAPEFLEVRGEIYIEKQDFLNLNKEQE 212

Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
             GR  +ANPRNAA+G LR+L+ +    R L +FV+  G T +  A  Q ++L K++  G
Sbjct: 213 EQGRDKFANPRNAAAGSLRQLDASITAQRSLKYFVYSGGVTEQNLASSQEQLLIKLKEFG 272

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F VN   +  N+   I ++Y  +K+ R  LPY+IDG+VYK+++F+LQ ++G  ARSPR+ 
Sbjct: 273 FSVNEISKLTNSEEEIFTFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRFA 332

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ ATLHN          
Sbjct: 333 TAHKFPAIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHN---------F 383

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
            ++MR  +D+R+ D V ++RAG+VIPK+  + + +R  D   F  P FCP C S+    L
Sbjct: 384 QEIMR--KDVRIDDYVFLQRAGDVIPKITGVDIGKRPNDTIAFDTPLFCPSCNSK----L 437

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
           +     ++   RC  GL C AQ  ER++HFVS++A +IEGLG++Q++F     D    I 
Sbjct: 438 HYAPEDIII--RCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLI---DKGL-IS 491

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
            P DIF L+ +  +S TK+EN+ G+G  SV NL+ +I + +N+SL RFI++LGIRH+G +
Sbjct: 492 NPLDIFFLKEKNDSSLTKLENMDGWGKKSVENLFKNIEQSKNVSLPRFIYALGIRHIGEQ 551

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A+ LA+ + SY NF  ++  +  ++ D +  L  +  +GD I   I++F+    N   +
Sbjct: 552 NAKLLAREFGSYANFIAQMELLSKNDLDIYQKLNDLEGIGDKILVDIIDFFDVKENTTLI 611

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +  L EV       E    S +  K +VFTG+L  I R +A+    +LGA V+A +S  T
Sbjct: 612 KK-LGEVLNIEDYKETREQSSLTGKIIVFTGSLPTISRAEAKATAEKLGAKVAASVSSNT 670

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           D+++ G + GSKL+KA++L +KI+ EE++L L++
Sbjct: 671 DLVVAGVDAGSKLKKAKELNIKIIGEEEWLTLIK 704


>gi|134034096|sp|Q4UN15|DNLJ_RICFE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 689

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 275/694 (39%), Positives = 412/694 (59%), Gaps = 29/694 (4%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           +I+ ++  YY    P++ DSEYD L      +   FP L      N P  KIG ++    
Sbjct: 22  KIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLVLE---NSPSKKIGAKITNKF 78

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
            K+TH IP LSL   ++ +D+R F+ RI  F +  +   IF   EPKIDG   +  Y+ G
Sbjct: 79  AKITHQIPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPIF--CEPKIDGLSFSAIYKNG 136

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
                A RGDG+ GED++A I+ I   P  +  N PE +EVRGE+YI K DFL LN E  
Sbjct: 137 LLTTGATRGDGYVGEDITANIKTIKNFPHKID-NAPEFLEVRGEIYIEKQDFLNLNKEQE 195

Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
             GR  +ANPRNAA+G LR+L+ +    R L +FV+  G T +  A  Q ++L K++  G
Sbjct: 196 EQGRDKFANPRNAAAGSLRQLDASITAQRSLKYFVYSGGVTEQNLASSQEQLLIKLKEFG 255

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F VN   +  N+   I ++Y  +K+ R  LPY+IDG+VYK+++F+LQ ++G  ARSPR+ 
Sbjct: 256 FSVNEISKLTNSEEEIFTFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRFA 315

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ ATLHN          
Sbjct: 316 TAHKFPAIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHN---------F 366

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
            ++MR  +D+R+ D V ++RAG+VIPK+  + + +R  D   F  P FCP C S+    L
Sbjct: 367 QEIMR--KDVRIDDYVFLQRAGDVIPKITGVDIGKRPNDTIAFDTPLFCPSCNSK----L 420

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
           +     ++   RC  GL C AQ  ER++HFVS++A +IEGLG++Q++F     D    I 
Sbjct: 421 HYAPEDIII--RCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLI---DKGL-IS 474

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
            P DIF L+ +  +S TK+EN+ G+G  SV NL+ +I + +N+SL RFI++LGIRH+G +
Sbjct: 475 NPLDIFFLKEKNDSSLTKLENMDGWGKKSVENLFKNIEQSKNVSLPRFIYALGIRHIGEQ 534

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A+ LA+ + SY NF  ++  +  ++ D +  L  +  +GD I   I++F+    N   +
Sbjct: 535 NAKLLAREFGSYANFIAQMELLSKNDLDIYQKLNDLEGIGDKILVDIIDFFDVKENTTLI 594

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +  L EV       E    S +  K +VFTG+L  I R +A+    +LGA V+A +S  T
Sbjct: 595 KK-LGEVLNIEDYKETREQSSLTGKIIVFTGSLPTISRAEAKATAEKLGAKVAASVSSNT 653

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           D+++ G + GSKL+KA++L +KI+ EE++L L++
Sbjct: 654 DLVVAGVDAGSKLKKAKELNIKIIGEEEWLTLIK 687


>gi|157828943|ref|YP_001495185.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933668|ref|YP_001650457.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. Iowa]
 gi|166216235|sp|A8GTF2|DNLJ_RICRS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359278|sp|B0BUZ1|DNLJ_RICRO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157801424|gb|ABV76677.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908755|gb|ABY73051.1| NAD-dependent DNA ligase [Rickettsia rickettsii str. Iowa]
          Length = 689

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 275/712 (38%), Positives = 423/712 (59%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  +  N+PE +EVR
Sbjct: 120 -CEPKIDGVSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKID-NVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  AR+PR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARNPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEI-----------ARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++     P+   +    RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKL--HYTPEDIII----RCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F     D    I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLI---DKGL-ISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++  L E+       E    S + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKK-LGEILNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|94497003|ref|ZP_01303577.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58]
 gi|94423679|gb|EAT08706.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58]
          Length = 703

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 285/720 (39%), Positives = 423/720 (58%), Gaps = 48/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  +A   L  L +E++ H+  Y+    P I D++YDAL R  +A+  AFP L R++ P
Sbjct: 7   LTEAEAANRLMRLAKEVAKHNRLYHDQDAPEISDADYDALIRENNALEAAFPHLIRADSP 66

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N    ++G     +L KV H++  +SL+  ++ ED+  F+ RI RF    DD  +  T E
Sbjct: 67  NA---QVGAASTTALKKVPHAVRMMSLDNGFSDEDIADFLARIRRFLALPDDAPVALTAE 123

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PKIDG   ++RYEKG+ V AA RGDG +GEDV+A +  I  IP R+    IP++ E+RGE
Sbjct: 124 PKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVHTIADIPQRLTGEAIPDLFEIRGE 183

Query: 191 VYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           VY++K DF+ALN  ++A    P     +ANPRNAA+G LR+ + T   +R L F  HG G
Sbjct: 184 VYMAKGDFVALNARLLAEAENPEKARQFANPRNAAAGSLRQKDATVTASRPLRFLAHGWG 243

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             S + A  Q  ++Q +   G PV++ +   ++   ++++Y  +++ R+ LP+DIDG+VY
Sbjct: 244 AHSALPADTQLGVMQAIAGWGLPVSDMLACVDSLDALIAHYRTIEAGRADLPFDIDGVVY 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q++LG  A++PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL PV +G
Sbjct: 304 KVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPVTVG 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++N TLHN D I  L            +R GDR++V+RAG+VIP+VVD +   R   
Sbjct: 364 GVVVSNVTLHNADEIARL-----------GVRPGDRIIVQRAGDVIPQVVDNLT--RDEA 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +PF FP+ CP+C S  VR+     G++    RCTGGL C AQ+ ERL+HFVSR A +IE
Sbjct: 411 REPFPFPTHCPVCGSEAVRE----EGEVDV--RCTGGLICPAQRFERLRHFVSRAALDIE 464

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +  F    D  + I  PADIF L++ +      +    G+ + SV NL  +I  
Sbjct: 465 GLGEKTIQEFL---DLGW-IAEPADIFRLKKHR----ADLLGREGWKEKSVDNLLMAIEA 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSY---QNFAQEINNIIAHNNDDWLSL--- 598
           +R     R +F LGIRHVGA  AR L K Y +    +  AQ+I  +    +D    +   
Sbjct: 517 KRQPDAARLLFGLGIRHVGAVTARDLLKRYATLPAIRALAQDIMALRDQPHDSQAKMDKA 576

Query: 599 ----IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
               I V  VG  +  A+  F+  P N+ A + LL EVSP     E  VS+ +  K +VF
Sbjct: 577 IAEHIGVDNVGVAVGHALAHFFHEPHNVEAWDDLLSEVSPPPYVVETTVSA-VTGKTVVF 635

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG L+ + R +A+    ++GA  +  +S KTD+++ G   GSKL++A  LG++++ E+ +
Sbjct: 636 TGKLETMSRDEAKAQAERMGAKAAGSVSAKTDLVVAGPGAGSKLKQATVLGIEVITEQAW 695


>gi|51473890|ref|YP_067647.1| NAD-dependent DNA ligase LigA [Rickettsia typhi str. Wilmington]
 gi|81389976|sp|Q68W27|DNLJ_RICTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51460202|gb|AAU04165.1| DNA joinase [Rickettsia typhi str. Wilmington]
          Length = 693

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 274/717 (38%), Positives = 427/717 (59%), Gaps = 39/717 (5%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S ++A+K L  L  +I+ ++  YY    P++ DSEYD L      + + FP L  S
Sbjct: 4   IDLISEKEAKKLLEELADKIAMYNHAYYIEDNPLVSDSEYDQLFNLNLKLENTFPHLVLS 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  KIG ++     KV H  P LSL   ++ ED+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKIGAKITNKFAKVIHQAPMLSLSNAFDEEDIRDFLERIKNFLRINEFTPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G F+  A RGDG+ GED++  I+ I   P  +  N PE +EVR
Sbjct: 120 -CEPKIDGLSFSAIYKHGLFITGATRGDGYVGEDITINIKTIKNFPHKID-NAPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GE+YI K DF+ LN E  A  R  +ANPRNAA+G +R+L+      R L +F++  G T 
Sbjct: 178 GEIYIEKQDFVNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++ L F VN   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 KNLASTQEQLLAKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F++Q ++G  ARSPR+ I+HKF      T+LL I +Q+GRTG+LTPVA L+P+ IGG +
Sbjct: 298 NFAMQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPLEIGGVV 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIP++  + +++R  D   
Sbjct: 358 VSRATLHNFQDI-----------ARKDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVK 406

Query: 428 FSFPSFCPICQSR---VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           F  P FCP C S+   V  D+           RC  GL C AQ  ER+ HFVS++A +I 
Sbjct: 407 FDTPVFCPSCNSKLRYVSEDI---------IIRCDNGLNCPAQNYERICHFVSKNAMDIA 457

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q+ F          I  P DIF L+++ +T+  ++EN+ G+G  SV NL+ +I K
Sbjct: 458 GLGRKQVAFLIDKR----LISNPLDIFFLKKKNETNLIRLENMDGWGKKSVANLWQNIEK 513

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            + ISL+RFI++LGIRH+G + A+ LA+ ++SY NF  ++  +  +++D +  L  +  +
Sbjct: 514 SQKISLQRFIYALGIRHIGEQNAKLLAREFVSYNNFIAQMELLSKNDSDVYQKLNDLEGI 573

Query: 605 GDIIAQAIVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           GD +   I++F+    NI  ++ L  +  +       E+N+   +  K LVFTG+L+ I 
Sbjct: 574 GDKMLVDIIDFFYVKENIQLIKKLGAVLNIEDYKETREQNI---LTGKILVFTGSLKTIS 630

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+E   +LGA V++ +S  TD++IVG N GSKL+KA++L +KI++E ++L  ++
Sbjct: 631 RVEAKEIAEKLGAKVASSVSSNTDLLIVGVNGGSKLKKAKELNIKIIDEAEWLAFIK 687


>gi|307293327|ref|ZP_07573173.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1]
 gi|306881393|gb|EFN12609.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1]
          Length = 711

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 287/724 (39%), Positives = 421/724 (58%), Gaps = 56/724 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A   L  L +EI+ H+  Y+   +P I D+ YDAL R  +A+  AFP L RS+ PN   
Sbjct: 11  EAANRLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHLIRSDSPNA-- 68

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G     +L KV H++  +SL+  +  ED+ +FI R+ RF    +D  +  T EPKID
Sbjct: 69  -QVGAAPTSALKKVQHAVRMMSLDNGFADEDIAEFIARVRRFLALPEDAPVALTAEPKID 127

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G   ++RYEKG+ V AA RGDG +GEDV+A +R I  IP R+    +P++ EVRGEVY++
Sbjct: 128 GLSCSLRYEKGELVLAATRGDGTTGEDVTANVRTIADIPQRLTGQAVPDLFEVRGEVYMA 187

Query: 195 KNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           K DF+ALN+ ++A    P     +ANPRNAA+G LR+ +     +R L F  HG G+ S 
Sbjct: 188 KADFVALNERLLAEAEDPEKARQFANPRNAAAGSLRQKDAAVTASRPLRFLAHGWGEVSA 247

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + A+ Q  ++Q +   G PV++ +   +T   ++++Y  +++ R+ LP+DIDG+VYKVD 
Sbjct: 248 VPAQTQLGVMQAIAGWGLPVSDRLACVDTLEALIAHYRAIEAARAELPFDIDGVVYKVDR 307

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++LG  A++PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL PV +GG ++
Sbjct: 308 LDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPVTVGGVVV 367

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +N TLHN D I  L            +R GDR++V+RAG+VIP+VVD +   R     PF
Sbjct: 368 SNVTLHNADEIARL-----------GVRPGDRIVVQRAGDVIPQVVDNLT--RDDPRSPF 414

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+CQS  VR+     G++    RCTGGL C+AQ+ ERL+HFVSR A +IEGLG+
Sbjct: 415 IFPDHCPVCQSEAVRE----EGEVDI--RCTGGLICAAQRFERLRHFVSRAALDIEGLGE 468

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++ F    D  + I  PADIF    R +T  T +    G+ + SV NL  +I  +R  
Sbjct: 469 KSIEEFL---DLGW-IAEPADIF----RLRTHRTDLLGREGWKEKSVDNLLAAIEAKRQP 520

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN---------------- 592
              R +F LGIRH+GA  AR L K Y +          IIA  +                
Sbjct: 521 DAARLLFGLGIRHIGAVTARDLLKRYTTLPAIHGLAKEIIALRDAAAPAEGEEESRFRNR 580

Query: 593 -DDWLS-LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
            D  ++  I V  VG  +  A+ +F+  P N+     LL EVSP     E   S+ +  K
Sbjct: 581 LDKAIAEQIGVENVGSAVGHALADFFHEPHNVEVWNDLLSEVSPPDYVVETTASA-VTGK 639

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +VFTG L+ + R +A+    +LGA  +  +S KTD+++ G   GSKL++A  LG+++++
Sbjct: 640 TVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKQAAALGIEVID 699

Query: 711 EEQF 714
           E  +
Sbjct: 700 EAAW 703


>gi|157964864|ref|YP_001499688.1| NAD-dependent DNA ligase LigA [Rickettsia massiliae MTU5]
 gi|166216234|sp|A8F2K5|DNLJ_RICM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157844640|gb|ABV85141.1| DNA ligase, NAD-dependent [Rickettsia massiliae MTU5]
          Length = 689

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/712 (38%), Positives = 422/712 (59%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S ++A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEKEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLNEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  +  N+PE +EVR
Sbjct: 120 -CEPKIDGLSFSAVYKNGVLTTGATRGDGYVGEDITANIKTIKNFPHKID-NVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNREDLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTQLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D   
Sbjct: 358 VSRATLHNFQEI-----------ARKDVRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTAT 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S+    L+     ++   RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSK----LHYMPEDIII--RCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F     D    I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLI---DKGL-ISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+   SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREVGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++  L E+       E    S + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKK-LGEILNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+A +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVTAGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|229587074|ref|YP_002845575.1| NAD-dependent DNA ligase LigA [Rickettsia africae ESF-5]
 gi|254781406|sp|C3PLJ2|DNLJ_RICAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|228022124|gb|ACP53832.1| DNA ligase, NAD-dependent [Rickettsia africae ESF-5]
          Length = 689

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 275/712 (38%), Positives = 423/712 (59%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  +  N+PE +EVR
Sbjct: 120 -CEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKID-NVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQDEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFVLQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEI-----------ARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++     P+   +    RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKL--HYTPEDIII----RCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F     D    I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLI---DKGL-ISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++ L   ++    +  +  SS + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKKLGGILNIEDYKETREQSS-LTDKIVVFTGSLSTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++ G   GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVGAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|238650378|ref|YP_002916230.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic]
 gi|257096313|sp|C4K0T1|DNLJ_RICPU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|238624476|gb|ACR47182.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic]
          Length = 689

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 275/712 (38%), Positives = 421/712 (59%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KV H +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGAKIANKFAKVMHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  +  N+PE +EVR
Sbjct: 120 -CEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKID-NVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEI-----------ARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++     P+   +    RC  GL C AQ  ER+ HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKL--HYTPEDIII----RCDNGLNCPAQNYERIHHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F     D    I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLI---DKGL-ISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLARAFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++  L E+       E    S + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKK-LGEILNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|15604557|ref|NP_221075.1| NAD-dependent DNA ligase LigA [Rickettsia prowazekii str. Madrid E]
 gi|6225281|sp|Q9ZCK9|DNLJ_RICPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3861252|emb|CAA15151.1| DNA LIGASE (lig) [Rickettsia prowazekii]
 gi|292572364|gb|ADE30279.1| DNA ligase, NAD-dependent [Rickettsia prowazekii Rp22]
          Length = 689

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 275/717 (38%), Positives = 422/717 (58%), Gaps = 39/717 (5%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S ++A+K L  L  +I+ ++  YY    P++ DSEYD L      + + FP L  S
Sbjct: 4   IDLISEQEAKKLLKELADKIAMYNHAYYIEDNPLVSDSEYDQLFNINLKLENTFPHLVLS 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G  +     KV H  P LSL   ++ +DLR F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGANITNKFAKVIHQAPMLSLSNAFDEDDLRDFLERIKNFLRINEFTPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G F+  A RGDG+ GED++  I+ I   P  +  N PE +EVR
Sbjct: 120 -CEPKIDGVSFSAIYKNGLFITGATRGDGYVGEDITMNIKTIKNFPHKID-NAPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E  A  R  +ANPRNAA+G +R+L+      R L +F++  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++ L F VN   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASTQEQLLTKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F++Q ++G  ARSPR+ I+HKF      T+LL I +Q+GRTG+LTPVA L+P+ IGG +
Sbjct: 298 NFAMQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPIEIGGVV 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIP++  + +++R  D   
Sbjct: 358 VSRATLHNFQDI-----------ARKDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVK 406

Query: 428 FSFPSFCPICQSR---VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           F  P FCP C S+   V  D+           RC  GL C AQ  ER+ HFVS++A +IE
Sbjct: 407 FDTPVFCPSCNSKLRYVSEDI---------IIRCDNGLNCPAQNYERICHFVSKNAMDIE 457

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q+ F          I  P DIF L+ + +T+  ++EN+ G+G  SV NL+ +I K
Sbjct: 458 GLGRKQVAFLIDKR----LISNPLDIFFLKEKNETNLIRLENMDGWGKKSVANLFKNIEK 513

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            + ISL+RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +++D +  L  +  +
Sbjct: 514 SQKISLQRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLSKNDSDIYQKLNDLEGI 573

Query: 605 GDIIAQAIVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           GD I   IV+F+    N   ++ L  +  +       E+N+   +  K +VFTG+L  I 
Sbjct: 574 GDKILVDIVDFFYVKENTQLIKRLGSVLNIEDYQETREQNI---LTGKIVVFTGSLSTIS 630

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+E   +LGA V+A +S  TD++I G N GSKL+KA++L +KI++E ++L  ++
Sbjct: 631 RVEAKEIAEKLGAKVTASVSLNTDLVIAGVNGGSKLKKAKELNIKIIDEVEWLAFIK 687


>gi|15893019|ref|NP_360733.1| NAD-dependent DNA ligase LigA [Rickettsia conorii str. Malish 7]
 gi|81527939|sp|Q92GM7|DNLJ_RICCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15620219|gb|AAL03634.1| DNA ligase [Rickettsia conorii str. Malish 7]
          Length = 689

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 275/712 (38%), Positives = 422/712 (59%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  +  N+PE +EVR
Sbjct: 120 -CEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKID-NVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEI-----------ARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++     P+   +    RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKL--HYTPEDIII----RCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F     D    I    DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLI---DKGL-ISNLLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLKNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++  L E+       E    S + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKK-LGEILNIEDYKETREQSGLTDKIVVFTGSLPTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|294011619|ref|YP_003545079.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S]
 gi|292674949|dbj|BAI96467.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S]
          Length = 711

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 284/736 (38%), Positives = 429/736 (58%), Gaps = 56/736 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +++  +A   L  L +EI+ H+  Y+   +P I D+ YDAL R  +A+  AFP L RS
Sbjct: 4   LTSMTEAEAANHLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHLVRS 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + PN    ++G     +L KV H++  +SL+  +  ED+ +FI R+ RF    ++  +  
Sbjct: 64  DSPNA---QVGAAPTSALKKVQHAVRMMSLDNGFADEDIAEFIARVRRFLALPENAPVAL 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187
           T EPKIDG   ++RYEKG+ V AA RGDG +GEDV+A +R I  IP R+    +P++ EV
Sbjct: 121 TAEPKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVRTIADIPERLTGDTVPDLFEV 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNFFVH 241
           RGEVY++K +F+ALN+ ++A    P     +ANPRNAA+G LR+ +     +R L F  H
Sbjct: 181 RGEVYMAKANFVALNERLLAEAEDPEKARQFANPRNAAAGSLRQKDAAVTASRPLRFLAH 240

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G G+ S + A+ Q  ++Q +   G PV++ +   +T   ++++Y  +++ R+ LP+DIDG
Sbjct: 241 GWGEVSAVPAETQLGVMQAIASWGLPVSDRLTCVDTLESLIAHYRAIEAARAELPFDIDG 300

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD    Q++LG  A++PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL PV
Sbjct: 301 VVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPV 360

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG +++N TLHN D I  L            +R GDR++V+RAG+VIP+VVD +  + 
Sbjct: 361 TVGGVVVSNVTLHNADEIARLG-----------VRPGDRIVVQRAGDVIPQVVDNLTRD- 408

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P A PF+FP  CP+CQS  VR+     G++    RCTGGL C AQ+ ERL+HFVSR A 
Sbjct: 409 DPRA-PFAFPDHCPVCQSEAVRE----EGEVDI--RCTGGLICPAQRFERLRHFVSRAAL 461

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG++ ++ F    D  + I  PADIF    R +T    +    G+ + SV NL  +
Sbjct: 462 DIEGLGEKSIEEFL---DLGW-IAEPADIF----RLKTHRADLMGREGWKEKSVDNLLAA 513

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN--------- 592
           I  +R     R +F LGIRH+GA  AR L K Y +          IIA  +         
Sbjct: 514 IEAKRQPDAARLLFGLGIRHIGAVTARDLLKRYATLPAIHALALEIIALRDAAQPAEGEE 573

Query: 593 --------DDWLS-LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
                   D  ++  I V  VG  +  A+ +F+  P N+     LL EVSP     E   
Sbjct: 574 ESRFRNRLDKAIAEQIGVENVGSAVGHALADFFHEPHNVEVWNDLLSEVSPPDYVVETTA 633

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           S+ +  K +VFTG L+ + R +A+    ++GA  +  +S KTD+++ G   GSKL++A  
Sbjct: 634 SA-VTGKTVVFTGKLETMSRDEAKAQAERMGAKAAGSVSAKTDLVVAGPGAGSKLKQAAA 692

Query: 704 LGVKIMNEEQFLFLLQ 719
           LG+++++E  +  +++
Sbjct: 693 LGIEVIDEAAWAEIVK 708


>gi|88658391|ref|YP_507122.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas]
 gi|123763773|sp|Q2GHG1|DNLJ_EHRCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|88599848|gb|ABD45317.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas]
          Length = 676

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 276/703 (39%), Positives = 422/703 (60%), Gaps = 41/703 (5%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A+ EL  L ++I +HD  YY    P I D+EYD L R+ + I +AFP L +S D    
Sbjct: 5   EKAKLELDKLNKQIQHHDVLYYVQDNPEISDAEYDELCRKRNLILNAFPKLTQSNDYQ-- 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            N IG   +    KV H     SL+  +N +D+ KFITR  +F    D+ SI  + E KI
Sbjct: 63  -NNIGSSPDTKFAKVKHEEKMFSLDNAFNQQDVEKFITRTKKFLNINDNQSIPLSCELKI 121

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG   ++ Y+KG+   A+ RG+G+ GE+++  ++ I  +P ++  N P+++EVRGE+YI 
Sbjct: 122 DGLSFSVIYKKGEIYQASTRGNGYFGENITTNVKTIKNLPHIIH-NAPDLLEVRGEIYID 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252
           + DF+ LN++        +ANPRNAA+G +R+L+  +IT  R L +F++ +  T+ +   
Sbjct: 181 RCDFIQLNND-----GNNFANPRNAAAGSVRQLDH-NITAQRKLKYFMYTIVNTACL--- 231

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L +++  GF VN      +      ++YN++ + RS + YDIDG++YKV++   Q
Sbjct: 232 TQEELLYQLKIWGFCVNEHTITTDNIEEAFNFYNQVYNNRSNINYDIDGIIYKVNDIKSQ 291

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG  ++SPRW I++KF   +A T+L  I IQIGRTG+LTP+A L P+NIGG ++T A+
Sbjct: 292 HILGTTSKSPRWAIAYKFPAAEAKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVTRAS 351

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN++ I+            +DIR GD V+VKRAG+VIP++VD+  N R  +   F FP+
Sbjct: 352 LHNKNEIE-----------RKDIREGDYVIVKRAGDVIPQIVDVDKNLRTQELTKFVFPT 400

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S V +       K  A+  CTG L C  Q LE++KHFVS+DAFNI G GK+QL 
Sbjct: 401 TCPSCGSSVYQ------AKQEASIYCTGELFCKDQILEKIKHFVSKDAFNIIGFGKKQLL 454

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           FF++       I    DIFTL+ +   S  K+E++ G+G+ S++NL+ +IN  + ISLE 
Sbjct: 455 FFYEQR----LITNITDIFTLEEKISNSDVKLESLHGWGEKSMSNLFSAINNSKVISLEN 510

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR +G  IA+ LA ++ SY+ +  E+   +A N D  L+   +  +G     ++
Sbjct: 511 FIFALGIRFIGKYIAKILANHFSSYETWYNEMLK-LAQNEDYSLN---IQQIGSKTIGSL 566

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             F+  P N+  +  L+K ++ +      +  S I  K +VFTG L  + R +A+     
Sbjct: 567 KMFFSQPHNLNMINDLVKHLTIT-DTQSSSYLSLIHGKIIVFTGELSSMSRSEAKIRSET 625

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            GA VS+ LS+ TD +I G+NPGSK +KAQ L V+I+ E+ +L
Sbjct: 626 AGAKVSSSLSKNTDFLIAGNNPGSKYKKAQSLNVQILTEDLWL 668


>gi|157804104|ref|YP_001492653.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel]
 gi|166216233|sp|A8EZT5|DNLJ_RICCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157785367|gb|ABV73868.1| DNA ligase [Rickettsia canadensis str. McKiel]
          Length = 689

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 274/714 (38%), Positives = 423/714 (59%), Gaps = 35/714 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I  +S ++A+K L  L  +I  ++  YY  +  ++ D+EYD L      +   FP L   
Sbjct: 4   IYLISEKEAKKLLKELADKIERYNHAYYIENNHLVSDAEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH  P LSL  +++ +D++ F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQAPMLSLSNVFDEQDVKDFVDRIKNFLRLNEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  ++ N PE +EVR
Sbjct: 120 -CEPKIDGLSFSAIYKNGLLTIGATRGDGYIGEDMTANIKTIKNFPHKIN-NAPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DF  LN E    GR  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFFNLNKEQEEQGRDKFANPRNAAAGSLRQLDSSVTAKRPLKYFVYSGGATE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q E+L+K++  GF VN   + A++   I ++Y  +K+ R  L Y+IDG+VYK++
Sbjct: 238 QNIASSQNELLKKLKEFGFRVNEISKLADSEEEIFAFYEYLKTNRENLSYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  AR+PR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARAPRFATAHKFPAIVGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN           +++R  +D+R+ D V ++RAG+VIP+++ + + +R  DA  
Sbjct: 358 VSRATLHN---------FQEIIR--KDVRIRDYVFLQRAGDVIPQIIGVDIGKRSTDATT 406

Query: 428 FSFPSFCPICQSR---VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           F+ P FCP C S+   +  D+           RC   L C AQ  ER++HFVS++A +IE
Sbjct: 407 FNTPLFCPSCNSKLHYIPEDI---------IIRCDNVLNCPAQNYERIRHFVSKNAMDIE 457

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++F     D    I  P DIF L+ + + S TK+EN+ G+G  SV NL+ +I +
Sbjct: 458 GLGRKQVEFLI---DKGL-ISNPLDIFLLKEKNEASLTKLENMDGWGRKSVENLFKNIEE 513

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            RN+SL RFI++LGIRH+G + A+ LA+ + SY NF  +I  +  ++++ +  L  +  +
Sbjct: 514 SRNVSLPRFIYALGIRHIGEQNAKLLAREFESYNNFISQIELLSKNDSNIYQKLNNLEGI 573

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           GD I   I+ F+    NI  ++  L EV       E    S +  K +VFTG+L    R 
Sbjct: 574 GDKILVDIINFFDVKENIELIKK-LGEVLNIEDYKETKEHSSLTGKIVVFTGSLPTTSRV 632

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+    +LGA V+  +S  TD++I G + GSKL+KA++LG+KI++EE++L ++
Sbjct: 633 EAKAMAEKLGAKVAVSVSSNTDLVIAGVDAGSKLKKAKELGIKIIDEEEWLTIV 686


>gi|288958932|ref|YP_003449273.1| DNA ligase (NAD+) [Azospirillum sp. B510]
 gi|288911240|dbj|BAI72729.1| DNA ligase (NAD+) [Azospirillum sp. B510]
          Length = 788

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 263/623 (42%), Positives = 393/623 (63%), Gaps = 32/623 (5%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I ++AL+ EQA  +L++L  EI++HD  Y+Q  +P I D++YDAL RR  AI   FP+L 
Sbjct: 14  IAVDALTPEQAAADLAALAAEIAHHDRLYHQQDQPEITDADYDALVRRNLAIEARFPELR 73

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R++ P+    ++G        KV H+IP LSL   +  ED+ +F  R+ RF    DD  +
Sbjct: 74  RADSPS---LRVGAAPAAGFGKVRHAIPMLSLGNAFAPEDVAEFDARVRRFLGLADDAPL 130

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            F  EPKIDG   ++RY+KG+ V AA RGDG  GE+V+A +R I  +P  L    PE++E
Sbjct: 131 TFVAEPKIDGLSCSLRYQKGELVLAATRGDGAEGENVTANVRTIRDVPHRLPAPFPEVLE 190

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S++DFLA+N      G + +ANPRNAA+G LR+L+     +R L FF + LG+
Sbjct: 191 VRGEVYMSRDDFLAMNAARAEKGEQLFANPRNAAAGSLRQLDSAITASRPLCFFGYALGE 250

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE  A+ Q+ + ++++  GF +N      +    +++YY  +  +R+ LP+DIDG+VYK
Sbjct: 251 ASEPIAETQWGIRERLKGWGFQLNRPAELCDGKDKLLAYYEGIGRLRAGLPFDIDGVVYK 310

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   LQ++LG  +R+PRW I+HKF  +QA TRL  I IQ+GRTG LTPVA L+ + +GG
Sbjct: 311 VDSLELQQRLGFVSRAPRWAIAHKFPAEQAQTRLKAITIQVGRTGALTPVAELDDITVGG 370

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++ ATLHNED I             +DIRVGD V+V+RAG+VIP+VV++++++R  D+
Sbjct: 371 VVVSRATLHNEDEI-----------ARKDIRVGDLVVVQRAGDVIPQVVEVVLSQRPADS 419

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+     CP+C S  +R+     G++V   RCTGGL C+AQ  ERL+HFVSRDAF+IEG
Sbjct: 420 VPYVPVETCPVCGSLAIRE----AGEVV--RRCTGGLICAAQAKERLRHFVSRDAFDIEG 473

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ ++ F+   D  F I+ P DIFTL+ R      ++    G+ + SV NL+ +IN+R
Sbjct: 474 LGEKIIEEFW---DEGF-IKSPVDIFTLEDR-----VELIGRPGWKEKSVENLFKAINQR 524

Query: 546 RN-ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI-IAHNNDDWLSLIRVPL 603
           R+ I L R IF+LGIRHVG   A+SLA++Y + + +   +     A    +W  L  +  
Sbjct: 525 RDGIELHRVIFALGIRHVGEVTAKSLARHYRTMRGWVDGMRAAERAMPGQEWRDLHALNG 584

Query: 604 VGDIIAQAIVEFYQNPRNICAVE 626
           VG + A  I+ ++ +P +   ++
Sbjct: 585 VGPVTADTILAWFADPESAAKLD 607



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 1/187 (0%)

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
           F D       D       + LE  I SLGI+ +    A++LA  Y +  ++   +   +A
Sbjct: 597 FADPESAAKLDFYAGSEALRLETIIGSLGIKRLNTRAAQALATRYGNLSDWRAAMERAVA 656

Query: 590 HN-NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
                 WL L+  P VG++ A+ +  F+   RN   VEAL   +        K  +S I 
Sbjct: 657 QAPGQPWLDLVATPDVGEVAAEELAGFFAEERNRLIVEALAGRLIVLEAAVPKAGNSPIA 716

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +VFTGTL+++ R +A+     LGA V+  +S KTD ++ G + GSK  KA+ LGV+I
Sbjct: 717 GKTVVFTGTLERMTRSEAKARAESLGAKVAGSVSGKTDYLVAGADAGSKAAKAKDLGVEI 776

Query: 709 MNEEQFL 715
           + EE++L
Sbjct: 777 LTEEEWL 783


>gi|73667316|ref|YP_303332.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake]
 gi|123732189|sp|Q3YRC1|DNLJ_EHRCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|72394457|gb|AAZ68734.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake]
          Length = 677

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 269/703 (38%), Positives = 415/703 (59%), Gaps = 41/703 (5%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A+ EL  L  +I +HD  YY    P I D+EYD L  + + I  +FP+LA +   N  
Sbjct: 4   EEAKLELDKLNSQIQHHDFLYYTQDNPQITDAEYDVLCHKRNLILESFPELASN---NNY 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            + +G   +    KV H+   LSL+  +N +D+ KFITR  +     +  SI  + E KI
Sbjct: 61  QDNVGSTPDAKFAKVKHAEKMLSLDNAFNQQDIEKFITRTKKLLDMDNSQSIAISCELKI 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG   ++ Y+KG+   A+ RG+G+ GE+++  ++ I  +P  +  N P+ +EVRGE+YI 
Sbjct: 121 DGLSFSVIYKKGEISQASTRGNGYFGENITNNVKTIKNLPHTIQ-NAPDSLEVRGEIYID 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252
           ++DF+ LN +        +ANPRNAA+G +R+L+  +IT  R L +F++ +  T  +   
Sbjct: 180 RSDFIQLNKD-----GNNFANPRNAAAGSVRQLD-INITAQRKLKYFMYTIVNTKCL--- 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L +++ LGF VN      N     +++YN+  + RS + YDIDG++YKV++   Q
Sbjct: 231 TQEETLNQLKTLGFCVNEHTITTNNIEDALNFYNQFYNNRSNISYDIDGIIYKVNDIKSQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG   +SPRW I++KF   +A T +  I IQIGRTG+LTP+A L P+NIGG ++T A+
Sbjct: 291 HILGATNKSPRWAIAYKFPAAEAKTLVNKISIQIGRTGVLTPIAELSPINIGGVIVTRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+  I+            +DIR GD V+VKRAG+VIP+VVD+  N R  +   F FP+
Sbjct: 351 LHNKSEIE-----------RKDIREGDYVIVKRAGDVIPQVVDVDKNLRAQELTKFIFPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S + +       +   +  CTG L C  Q LE++KHFVS+DAFNI G GK+QL 
Sbjct: 400 TCPSCGSNLFQ------AEQEVSIYCTGELFCKNQILEKIKHFVSKDAFNIIGFGKKQLL 453

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           FF++       I    DIFTL+ +   S  K+E++ G+G+ S+ NL+ +IN  + ISLE 
Sbjct: 454 FFYEQG----LITNIVDIFTLEEKISNSDLKLESLHGWGEKSIHNLFSAINNSKTISLEN 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG  IA+ LAK++LSY+ +  E+  +    N     L+ +  +G     ++
Sbjct: 510 FIFALGIRFVGKYIAKILAKHFLSYEKWYHEMLRLAQDEN----YLLNIQQIGHKTIHSL 565

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             F+    N+  +  L++ ++ +  +   ++S  +  K +VFTG L  + RH+A+     
Sbjct: 566 KMFFTEQHNLDTINNLVRHLTITDAKTTSHLSL-LHGKTIVFTGELSNMSRHEAKTKSET 624

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            GA VS+ LS+ TD +IVG+NPGSK +KAQ L ++I+ E+ +L
Sbjct: 625 AGAKVSSSLSKNTDFLIVGNNPGSKYKKAQSLNIQILTEDLWL 667


>gi|114705256|ref|ZP_01438164.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506]
 gi|114540041|gb|EAU43161.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506]
          Length = 821

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 259/649 (39%), Positives = 383/649 (59%), Gaps = 47/649 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E L   +A  EL  L +EI+ HD  YY    P + D++YDAL+RR  AI   FP L R
Sbjct: 5   PVENLDETEAASELERLAREIAEHDRAYYGDDAPTLSDADYDALRRRNTAIEARFPALIR 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           ++ P+    ++G   + +  KV H++P LSL+  +  ED+  F  R+ R  + +D + + 
Sbjct: 65  ADSPS---KRVGAAPSTTFAKVRHAVPMLSLDNAFTEEDVADFAKRVRRIAKLQDTDGLG 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            T EPKIDG  +++RY  G+   AA RGDG  GEDV+   R +  IP V     P++ EV
Sbjct: 122 ITAEPKIDGLSLSLRYVNGELETAATRGDGTVGEDVTPNARTVDDIP-VRIDRAPKVFEV 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGK 245
           RGEVY++  DF ALN+   A G+  +ANPRNAA+G LR+ +  ++TR   L FF +  G+
Sbjct: 181 RGEVYMAHADFAALNERQEAAGKPRFANPRNAAAGSLRQKD-AEVTRSRPLRFFAYAWGE 239

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE+  + Q E++  +   GFPVN  +++  T   ++ +Y  ++  R++L YDIDG+VYK
Sbjct: 240 ASEVPGETQSEVVAAIGKFGFPVNELMQRFETIDALIEHYRRIEENRASLGYDIDGVVYK 299

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+  LQK LG  +R PRW I+HKFA ++A+T L  ID+  GRTG L P+ARLEPV +GG
Sbjct: 300 VDDLRLQKDLGFVSRFPRWAIAHKFAAEKATTVLKGIDVTTGRTGALNPIARLEPVTVGG 359

Query: 366 ALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
            +++NATLHNEDYI G+DA G+ +R  G DIR+GD V+++RAG+VIP+++D++  +R   
Sbjct: 360 VVVSNATLHNEDYIAGIDADGETIRPSGLDIRIGDTVVIQRAGDVIPQIIDVVAEKRPAG 419

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+PF FP+ C +C S  VR++NP+TG+  +   CT GL C AQ  E LKH VSR AF+IE
Sbjct: 420 AKPFVFPTHCAVCGSNAVREMNPRTGRPDSKRHCTAGLTCPAQGREGLKHLVSRSAFDIE 479

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF-------------- 530
           GLG+  ++  F   D    +R PADIFTL   +  +  +   +                 
Sbjct: 480 GLGETLVEALF---DEGL-VRQPADIFTLDFEKMKALLEERALAARREREAAEDEAARAE 535

Query: 531 -------GD-------VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                  GD        S  N++D I+ RR + LERFIF LGI +VG   A++LA++   
Sbjct: 536 GREPKVRGDDRAYDYTKSTQNIFDGIDARRTLPLERFIFGLGIPNVGETTAKALARH--- 592

Query: 577 YQNFAQEINNIIAHN----NDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           + + A  I  + A         W+ L  +  +G+   + I++  Q+  N
Sbjct: 593 FSDVAALIGGVDAAEKGKPGSAWIELSALKGIGEKSFEQILDLDQSKLN 641



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 3/124 (2%)

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKK 651
           +L+L     +G +  Q+++ F+    N  AV+ALLK    +       V+S    +    
Sbjct: 689 YLNLTTDSDIGTVATQSLINFFAEDHNRQAVDALLKAGVSTTNERMTAVASNDSPVSGLT 748

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +VFTG+L+K+ R  A+E    LGA VS  +S KTD+++ G   GSKL KA +LG+++++E
Sbjct: 749 IVFTGSLEKMTREAAKEMAEGLGAKVSGSVSNKTDLVVAGPGAGSKLSKASELGIEVIDE 808

Query: 712 EQFL 715
           + + 
Sbjct: 809 DAWF 812


>gi|58038653|ref|YP_190617.1| NAD-dependent DNA ligase [Gluconobacter oxydans 621H]
 gi|81352629|sp|Q5FUI5|DNLJ_GLUOX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|58001067|gb|AAW59961.1| NAD-dependent DNA ligase [Gluconobacter oxydans 621H]
          Length = 683

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 276/701 (39%), Positives = 419/701 (59%), Gaps = 38/701 (5%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           ++LE +++  D+ Y+   +P + D+ YDA +R   A+  A+PDL   E   G   ++G  
Sbjct: 13  AALEADLAQWDEAYHGRDEPEVSDAVYDAARRELLALEEAYPDLRSQE---GASQRVGAT 69

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPKIDGTMI 139
            + +  K  H +P LSL+ +++ E    F++R+ RF    +D   ++ F  EPKIDG  I
Sbjct: 70  PDSAFGKYRHLVPMLSLDNVFDPEGFDGFVSRVGRFLGLDEDGLQALQFVAEPKIDGLSI 129

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ YE G FV    RGDG  GEDV+A +  +  IPR L    PE +E+RGEV++SK+ FL
Sbjct: 130 SLTYEHGHFVRGTTRGDGIEGEDVTANLLTLKDIPRELPGEAPERVEIRGEVFLSKSSFL 189

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKGQYEM 257
            LN++ +A G KP+ANPRNAA+G LR+L+  +ITR   L+ F +  G TS   A   ++ 
Sbjct: 190 TLNEQQVARGAKPFANPRNAAAGSLRQLD-AEITRSRPLSLFAYAQGYTSSPVATTHWDY 248

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K+R  GF VN   +       I +Y  ++   RS L YDIDG+V+K+D+ SLQ +LG 
Sbjct: 249 LEKLRSWGFTVNPLSQMIAHARDIPAYVEKLARERSELDYDIDGIVFKLDDLSLQDRLGF 308

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             R+PRW I+ KF  +QA TRL +I+IQ+GRTG LTPVA LEPVN+GG +++ ATLHNED
Sbjct: 309 AGRAPRWAIAWKFPAEQAITRLREIEIQVGRTGALTPVAHLEPVNVGGVIVSRATLHNED 368

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I             +D+RVGD V ++RAG+VIP+++  + +E  P ++PF +P  CP+C
Sbjct: 369 EI-----------ARKDVRVGDLVRLQRAGDVIPQILGPVPSE-EPRSEPFVYPDHCPVC 416

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S   R          A  RCTGGL C AQ +ERL H VSR+AF+I+GLG++ +  F+  
Sbjct: 417 GSLAERVHGE------AVRRCTGGLTCEAQIVERLIHMVSRNAFDIDGLGERSIREFYD- 469

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  IR P DIF L++ ++    +     G+G +SV NL+ +I  RR I L R IF L
Sbjct: 470 ---AGYIRRPGDIFRLRQHEEALLQRD----GWGRLSVDNLFRAIEDRRTIPLSRLIFGL 522

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH-NNDDWLSLIRVPLVGDIIAQAIVEFY 616
           GIR +G   A+ LA++Y +++N+   +  + A  ++++  SL  +  VGD IA  +  F+
Sbjct: 523 GIRRIGERNAQLLARHYQTFENWRTAM--LAARPDSEERASLGAIMGVGDAIADELSAFF 580

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               NI  ++ L  E+   I   E      +  K +VFTGTL  + R +A+    +LGA 
Sbjct: 581 SESHNIETLDDLALELKDIIA-EEAPSEGHLSGKVIVFTGTLTTMSRPEAKAIAERLGAQ 639

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KT ++++G+  GSK +KA +LG++ ++E  +  L
Sbjct: 640 VTDSVSKKTSLVVLGEKAGSKAKKAAELGIETVDESGWRVL 680


>gi|157826142|ref|YP_001493862.1| NAD-dependent DNA ligase LigA [Rickettsia akari str. Hartford]
 gi|166216231|sp|A8GPM9|DNLJ_RICAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157800100|gb|ABV75354.1| DNA ligase [Rickettsia akari str. Hartford]
          Length = 689

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 272/715 (38%), Positives = 415/715 (58%), Gaps = 35/715 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S  +A+K L  L  +I+ ++  YY    P++ D+EYD L      +   FP L   
Sbjct: 4   IDFISEAEAKKLLEELSCKIAAYNHAYYIEDNPLVSDAEYDQLVNINLKLEQQFPHLVLE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  ++G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKEVGAKIANKFVKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G  +  A RGDG+ GED++A I+ I   P  +  N PE +EVR
Sbjct: 120 -CEPKIDGLSFSAIYKNGLLITGATRGDGYVGEDITANIKTIKNFPHKID-NAPECLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN+E    GR  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNEEQEEQGRDQFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF VN   +   +   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKKFGFSVNEISKLTKSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFELQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN           +++R  +D+++ D V ++RAG+VIPK+    + +R  D   
Sbjct: 358 VSRATLHN---------FQEIVR--KDVQIKDYVFLQRAGDVIPKITGADIEKRPNDTIA 406

Query: 428 FSFPSFCPICQSR---VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           F  P FCP C S+   V  D+           RC  GL C AQ  ER++HFVS++A +I 
Sbjct: 407 FEAPLFCPSCNSKLYYVPEDI---------IIRCDNGLNCPAQHYERIRHFVSKNAMDIA 457

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++F          I  P DIF L++  + S  K+EN+ G+G  SV  L  +I K
Sbjct: 458 GLGRKQVEFLIAKG----LISNPLDIFFLKKNNEASLIKLENMDGWGQKSVEKLLKNIEK 513

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +N+SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +++D +  L  +  +
Sbjct: 514 SKNVSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLSKNDSDIYQKLNNLEGI 573

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           GD I   I+ F     NI  ++  L E+       E    S +  K +VFTG+L  I R 
Sbjct: 574 GDKILIDIIAFLDVKENIQLIKK-LGEILNIEDYKETRAQSSLTGKIVVFTGSLPTISRA 632

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +    +LGA V+A +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 633 EVKATAEKLGAKVAASVSSNTDLVVAGLDAGSKLQKAKELNIKIIDEEEWLTLIK 687


>gi|85374270|ref|YP_458332.1| DNA ligase [Erythrobacter litoralis HTCC2594]
 gi|123409617|sp|Q2N9V6|DNLJ_ERYLH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84787353|gb|ABC63535.1| DNA ligase [Erythrobacter litoralis HTCC2594]
          Length = 736

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 286/753 (37%), Positives = 416/753 (55%), Gaps = 82/753 (10%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E LS  +A  EL  L ++I+ HD  Y+    P I D EYDAL RR   +  AFP L R 
Sbjct: 5   LENLSEAEAANELMRLARQIAKHDRLYHAEDAPEITDQEYDALVRRNAELEAAFPHLVRE 64

Query: 69  EDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           + P+    K+G  +  S L KVTH +  +SL+  +  E++ +F+ R+ R+    +D +I 
Sbjct: 65  DSPS---RKVGHAVAASPLSKVTHEVRMMSLDNAFADEEVAEFVARVRRYLNIGEDEAIA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--------- 178
           FT E KIDG   ++RYE GK V AA RGDG  GEDV+  +  I  IP+ L+         
Sbjct: 122 FTAEDKIDGLSCSLRYENGKLVRAATRGDGQVGEDVTPNVAHIGDIPQELTPLPLAGGAG 181

Query: 179 ----------------------LNIPEIIEVRGEVYISKNDFLALNDEMIAVGR------ 210
                                  N P + E+RGEVY++  DF ALN  ++   R      
Sbjct: 182 GGPLDDSGSAPTPDPSRRREGKWNGPAVFEIRGEVYMATADFHALNARLMDEARAEADEK 241

Query: 211 ---------KPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQ 259
                    + +ANPRNAA+G LR+ + +   TR L F+ HG G    ++  + Q E+++
Sbjct: 242 DNAFDTAKVRQFANPRNAAAGSLRQKDASVTATRPLRFWAHGWGAVEGDVPGETQVEVVE 301

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           ++   G PV+   R+  T   ++++Y  + + R+ LPY+IDG+VYKVD    Q++LG  A
Sbjct: 302 QIAAWGVPVSPLFRRCETLEEMLAHYEAIGAQRADLPYEIDGVVYKVDRLDYQQRLGFVA 361

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++PRW I+ KF  +QA T L +IDIQ+GRTG LTPV RL PV +GG  +TN TLHN D I
Sbjct: 362 KAPRWAIARKFPAEQAETTLENIDIQVGRTGKLTPVGRLAPVLVGGVTVTNVTLHNRDEI 421

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           + L            +R GDRV+V+RAG+VIP+VV  +  +   D+  F FP  CP C S
Sbjct: 422 ERL-----------GVRPGDRVVVQRAGDVIPQVVRNLTPDEKRDS--FEFPDTCPECGS 468

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
             V +   + G  V   RCTGGL C AQ+ ERLKHFVSR A +I+GLG++ +D FF    
Sbjct: 469 EAVSE---EGGVDV---RCTGGLICPAQRTERLKHFVSRAALDIDGLGEKTIDQFFA--- 519

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +  PADIF L+ R+     +I  + G+ D SV NL  S+  RR     R +  LGI
Sbjct: 520 -LGWLESPADIFRLKDRRD----EILALEGWMDKSVDNLLASVEARREPDTARLLLGLGI 574

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVGA  AR L KY+       +      A + +  ++L  +  +G  + +A+ +F+   
Sbjct: 575 RHVGAVTARDLMKYFHELPALRETAEKARAGDEEAVVALTSIDGIGSAVVEALGDFFHEE 634

Query: 620 RNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            N    + LL EVSP   R+E + + S +  K +VFTG L+ + R +A+    +LGA  S
Sbjct: 635 HNRAVWDDLLSEVSPP--RYEVETLDSPVAGKTVVFTGKLETMSRDEAKAQAERLGAKAS 692

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
             +S KTD+++ G   GSKL+KAQ LG+++++E
Sbjct: 693 GSVSAKTDLLVAGPGAGSKLKKAQDLGIEVIDE 725


>gi|329889238|ref|ZP_08267581.1| DNA ligase, NAD-dependent [Brevundimonas diminuta ATCC 11568]
 gi|328844539|gb|EGF94103.1| DNA ligase, NAD-dependent [Brevundimonas diminuta ATCC 11568]
          Length = 774

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 263/598 (43%), Positives = 364/598 (60%), Gaps = 32/598 (5%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+E L+  QAR+EL  L  E++ HD  YY  + P I D++YD LKRR  A+  AFP L
Sbjct: 5   FTPVETLTEAQAREELDRLSAELARHDALYYADAAPEISDADYDELKRRALALEAAFPAL 64

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           +    P  P  ++G  ++    +V H +P LSL+  ++  ++R F+ RI RF +   D  
Sbjct: 65  S---GPISPSQRVGAPVSTQFAEVRHGVPMLSLDNAFDEGEVRDFVARIARFLKLPGDEP 121

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEI 184
           I F  EPKIDG   ++RYEKG  V  A RGDG +GEDV+A +R + +IP+ L+    P++
Sbjct: 122 IAFVAEPKIDGLSASLRYEKGVLVQGATRGDGKTGEDVTANLRTLDSIPQTLAGSGWPDV 181

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG 242
           IE+RGEVY     F A N    A G++ YANPRN A+G LR+ +P  IT  R L FF + 
Sbjct: 182 IEIRGEVYAPNAAFDAFNAAAEAEGKRTYANPRNFAAGSLRQKDPK-ITALRPLTFFAYA 240

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+TS  FA+ Q   L+  R  GF VN+   +     G++  Y  +++ RS L YDIDG+
Sbjct: 241 WGETSAPFAETQAGALEAFRSWGFQVNDRSARVEGADGLIGVYQTLETDRSRLGYDIDGV 300

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKVD    Q++LG  ARSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL PV 
Sbjct: 301 VYKVDRLDWQQRLGFIARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHPVT 360

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG ++ NATLHNED I             +D+RVGD V+++RAG+VIP++V ++   R 
Sbjct: 361 VGGVVVRNATLHNEDEI-----------ARKDVRVGDTVVLQRAGDVIPQIVGVVETLRP 409

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            DAQP+ FP+ CP+C S  VR+ +          RCTGGL C AQ +ERLKHFVSR AF+
Sbjct: 410 DDAQPYIFPTVCPVCGSEAVREGDE------VKRRCTGGLICDAQIVERLKHFVSRRAFD 463

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR-RQQTSTTKIENILGFGDVSVTNLYDS 541
           IEGLG++QL  F         I+ PADIF L R  ++ +  + E+  G+G+ SV NL   
Sbjct: 464 IEGLGEKQLIAFHARG----WIKEPADIFRLARDEEKLALLRAED--GYGETSVGNLIAG 517

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH-NNDDWLSL 598
           I+ RR ISL+R IF LG+R +G + +  L++ + S+  F        +   +DDW +L
Sbjct: 518 IDARRVISLDRLIFGLGVREIGEQTSLVLSRAFGSWTAFRDACMAAASGLASDDWKTL 575



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 1/165 (0%)

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR-VPLVGDIIAQAIV 613
            +L    + A   RSLA+    + +  +           D L+ I  V  VG + A+A+ 
Sbjct: 609 IALAFPGMAAPARRSLAEISEGWSDLTRWAAVARDEGPSDMLNQIAGVSGVGPVAAEALA 668

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F+  P N+  V+ALL E+            S +  K +VF+G+L++  R +A+     L
Sbjct: 669 HFFHEPHNLQVVDALLAELERVEDVAAPVTDSPVAGKTVVFSGSLERFTRDEAKARAESL 728

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           GA VS  +S+KTD ++ G   GSKL+ A++ GV ++ E+++L L+
Sbjct: 729 GAKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVTVLTEDEWLALI 773


>gi|330994412|ref|ZP_08318338.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
 gi|329758538|gb|EGG75056.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
          Length = 712

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 274/705 (38%), Positives = 398/705 (56%), Gaps = 35/705 (4%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A K L+ L   +   D  Y+Q+  P++ D+ YD+L++    +   FPDL R+   + P  
Sbjct: 31  AEKALTQLATLLPALDAAYHQHDAPLVDDATYDSLRQLNTRLEARFPDLRRT---DSPAQ 87

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFTLEPKI 134
           ++G        +  H +P LSL+ +++ E+   FI+RI RF    ++ +  + F  EPKI
Sbjct: 88  QVGAPATGPFRRHRHMVPMLSLDNVFSREEFEGFISRIARFLGLDEEQARQLSFVAEPKI 147

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++ YE G+FV    RGDG  GEDV+A +R +  IP  L    P++IE+RGEV++S
Sbjct: 148 DGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDIPDQLPAPCPDVIEIRGEVFLS 207

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252
           K  FL LN      G +P+ANPRNAA+G LR+L+   IT  R L+ F +  G  S   A 
Sbjct: 208 KQAFLELNAAQERAGDRPFANPRNAAAGSLRQLD-AGITARRPLSLFAYAAGYCSAPLAA 266

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +  L ++   GF VN    Q        ++   +   RS L YDIDG+VYK+D+ +LQ
Sbjct: 267 THHGYLAQLAAWGFRVNPLSTQVKDAGAAEAFMERLTLERSALDYDIDGIVYKLDDRALQ 326

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   R+PRW ++ KF  +QA TRL  IDIQ+GRTG LTPVA LEPVN+GG ++T A+
Sbjct: 327 ERLGFAGRAPRWAVAWKFPAEQAVTRLEKIDIQVGRTGALTPVAFLEPVNVGGVMVTRAS 386

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +DIR GD V V+RAG+VIP+V  +++   H D  P+ FP 
Sbjct: 387 LHNEDEIT-----------RKDIREGDLVHVQRAGDVIPQVTGVVLPRDH-DRPPYRFPH 434

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C +   R      G++V   RC+GGL C AQ +ERL HFVSRDAF+IEGLG + + 
Sbjct: 435 VCPACGAHAER----PEGEVV--WRCSGGLTCPAQVVERLIHFVSRDAFDIEGLGDRTIV 488

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F +       +R PADIF L   +     +I +  G+G VS  NL  +I  RR I L R
Sbjct: 489 EFHE----LGWLRTPADIFRLDAHE----AEIASRDGWGRVSAHNLVTAIAARRTIELSR 540

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I++LGIR +G   AR LA++Y S  N+  ++       +D  L L  +  +G  IA  +
Sbjct: 541 LIYALGIRRIGINNARLLARHYGSLANWRAQMEKAAVIGSDARLELGSITGIGTAIADEL 600

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           V F+    N   ++  L  V   +   +      +  + +VFTGTL  + R +A+    +
Sbjct: 601 VAFFAEAHNRATLDD-LTHVLDHVTDEQAVAEGTLSGRTIVFTGTLTTMTRPEARAVAER 659

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           LGA VS  +S KTD++++G+  GSK  KA +LG++ M+E  +  L
Sbjct: 660 LGARVSDSVSTKTDLVVLGEKAGSKARKAAELGIRTMDEAGWRVL 704


>gi|85702769|ref|ZP_01033873.1| DNA ligase, NAD-dependent [Roseovarius sp. 217]
 gi|85671697|gb|EAQ26554.1| DNA ligase, NAD-dependent [Roseovarius sp. 217]
          Length = 866

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 287/706 (40%), Positives = 407/706 (57%), Gaps = 47/706 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+ ++AR EL+ L   ++  +  Y+    P I D+ YDALK R  AI    P L 
Sbjct: 5   IAVEDLTEDEARTELARLAALLAEANRAYHTEDAPEITDAAYDALKARNAAIEARLPALK 64

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R++  +   +++G   +    KVTH I  LSL   +   D+ +F TRI R+    DD  +
Sbjct: 65  RADSAS---DQVGAAPSDGFAKVTHRIRMLSLGNAFEAGDVAEFDTRIRRYLGLADDAPL 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE+G+ V AA RGDG  GE+V+A    I  IP  L+   PE++E
Sbjct: 122 AYTAEPKIDGLSLSLRYEQGRLVQAATRGDGEVGENVTANAHTIADIPETLT-GAPEVLE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN    A   K +ANPRNAA+G LR+L+ T    R L FF +  G+
Sbjct: 181 VRGEVYMSHADFAALNARQAAKSDKSFANPRNAAAGSLRQLDATITAARPLRFFAYSWGE 240

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A  Q   + ++  LGF  N      +    +++ Y  ++  R+TL YDIDG+VYK
Sbjct: 241 LSAPLADTQMGAIDRLAALGFQTNPLTVLCDGTEALLAQYARIEQARATLGYDIDGVVYK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+  LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 301 VDDLGLQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG 360

Query: 366 ALITNATLHNEDYIKGLDASGKVMR-----GGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
            +++NATLHNEDYI G D+ G V+R       +DIRVGD V V RAG+VIPK+ D+ + +
Sbjct: 361 VVVSNATLHNEDYIAGRDSKGAVIRPDENGNAKDIRVGDWVQVYRAGDVIPKIADVDLTK 420

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  +A PF FP+ CP C S  VR+         A  RC GGL C AQ +E+LKHFVSR A
Sbjct: 421 RPENAAPFIFPTTCPECGSDAVREEGD------AVRRCMGGLICPAQAVEKLKHFVSRAA 474

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +Q++ F+   D    I+ PADIFTL+ R   + TK+ N  G+G+ SV  L++
Sbjct: 475 FDIEGLGAKQIEMFYN--DDQLPIKQPADIFTLKERDGKNLTKLANREGWGEKSVAKLFE 532

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA--------QEINNIIAH-- 590
           +I  RR++ L RFIF+LGI +VGAE+++ LA ++ S+            Q I   I H  
Sbjct: 533 AIEARRSVELPRFIFALGIPNVGAEVSKDLANFHGSWTALVQANDDVKNQRIQTAIEHWS 592

Query: 591 -----NNDDWLSLIRVPLVGDIIAQAIVEFYQNP---RNICAVEALLKEVSPSIGRHEKN 642
                N+ +WL ++    V + + +  + F+      + +  V  LL  +   +G+    
Sbjct: 593 RINISNDTNWLEVVE---VANELREFELSFWDRLYAYKGVAGV-GLLANLRKFLGKSLTK 648

Query: 643 VSSEIENKKLVFTGTLQKIQRHK-----AQEYVTQLGAVVSAILSR 683
           VS E   K  VF  T +  +R+      A+E    LGA    +L +
Sbjct: 649 VSDEQATK--VFDATFKNTKRYSTKYEAAKEQFGSLGAFKEELLQK 692



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 2/120 (1%)

Query: 601 VPLVG--DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           +PLVG   +   +I+ F+ N  N+ AV ++LK V P     +    S I  K +VFTGTL
Sbjct: 744 LPLVGHGQVTVDSIIRFFGNNNNVAAVNSILKYVDPKEFEKQAITDSSIYGKTVVFTGTL 803

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R +A+     LGA V+  +S KTD++I G   GSK +KA +LG++ ++E+ +L L+
Sbjct: 804 EKMTRAEAKARAEGLGAKVAGSVSAKTDLLIAGPGAGSKAKKAAELGIETIDEDGWLALI 863


>gi|296285034|ref|ZP_06863032.1| DNA ligase [Citromicrobium bathyomarinum JL354]
          Length = 733

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 284/747 (38%), Positives = 412/747 (55%), Gaps = 78/747 (10%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E LS  +A  EL  L + I  H+  Y+    P I D EYDAL RR +A+  AFPDL R  
Sbjct: 9   EPLSEAEAANELMRLARTIRKHNRLYHAEDAPEITDQEYDALVRRNEALEAAFPDLVR-- 66

Query: 70  DPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P   +G E+  S L KVTH++  +SL+  +N E++ +++ R+ RF   + D  I F
Sbjct: 67  -PDSPSKGVGHEVAGSPLSKVTHAVRMMSLDNAFNGEEVGEWVARVRRFLDLEVDTPIAF 125

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T E KIDG   ++RYEKG+ V AA RGDG  GEDV+A +  I  IP  L+ + P++ EVR
Sbjct: 126 TAEDKIDGLSCSLRYEKGQLVRAATRGDGQVGEDVTANVAHIADIPAQLTGDAPDVFEVR 185

Query: 189 GEVYISKNDFLALNDEMIAVGR---------------KPYANPRNAASGILRRLNPT-DI 232
           GEVY+ +  F  LN  ++   R               + +ANPRNAA+G LR+ + +   
Sbjct: 186 GEVYMERAAFADLNTRLMDEARAAASEKGEEFDPAKARQFANPRNAAAGSLRQKDASVTA 245

Query: 233 TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR 292
            R L F+ HG G+ S++  + Q ++++ +   G PV+    +      ++ +Y  + S R
Sbjct: 246 KRPLRFWAHGWGEASQVPGETQTDVIRAIEAFGLPVSPQFTRVEGLDALLDHYETIASAR 305

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
             LPY+IDG+VYKVD    Q++LG  A++PRW ++HKF  ++A T L  IDIQ+GRTG L
Sbjct: 306 PDLPYEIDGVVYKVDRLDWQERLGFVAKAPRWALAHKFPAERAETTLEAIDIQVGRTGKL 365

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPV RL PV +GG  +TN TLHN D I  L            +RVGDRVL++RAG+VIP+
Sbjct: 366 TPVGRLAPVLVGGVTVTNVTLHNRDEIARL-----------GLRVGDRVLIQRAGDVIPQ 414

Query: 413 VVDIIVNERHPDAQ--PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           VV+ +     PDAQ   F FP  CP C S  V + +          RCTGGL C AQ+LE
Sbjct: 415 VVENLT----PDAQRERFEFPETCPECGSEAVAEEDE------VDVRCTGGLICPAQRLE 464

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
           R+KHFVSR A +IEG+G++ +  F +       +  PADIF L++R+     +I  + G+
Sbjct: 465 RMKHFVSRGALDIEGMGEKTIAEFLER----GWLESPADIFRLRKRRD----EILALEGW 516

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF---AQEINNI 587
            D SV NL  +I  +R     R +F LGIRHVGA  AR L K     +     A E +  
Sbjct: 517 QDKSVDNLLAAIEAKRAPDAARLLFGLGIRHVGAVTARDLLKGLGDIRKLPGKAAEFHRY 576

Query: 588 IAHN---NDDWLSL--------------IRVPLVGDIIAQAIVEFYQNPRN------ICA 624
              N    D+ +S               +R   +G  +  A+ +F+    N      +  
Sbjct: 577 RIENPRGEDEKVSPFNARMLDAVRRIYEVRADGIGTAVGHALADFFHEEHNRQVWDDLIG 636

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
            E    EV P +   E  V S +  K +VFTG L+ + R +A+    +LGA  +  +S K
Sbjct: 637 AEPGAGEVDPPVYEVE-TVESPVAGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAK 695

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           TD+++ G   GSKL+KA++LG+++++E
Sbjct: 696 TDLLVAGPGAGSKLKKAEELGIEVIDE 722


>gi|296532809|ref|ZP_06895486.1| NAD-dependent DNA ligase LigA [Roseomonas cervicalis ATCC 49957]
 gi|296266870|gb|EFH12818.1| NAD-dependent DNA ligase LigA [Roseomonas cervicalis ATCC 49957]
          Length = 719

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 293/739 (39%), Positives = 422/739 (57%), Gaps = 60/739 (8%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +P+ AL+  QA +EL++L Q I+  D  Y+Q   P+I D+EYDAL+RR  AI   FP L 
Sbjct: 8   LPVTALTEAQAAEELAALAQAIAEADLAYHQQDAPVITDAEYDALRRRNAAIEARFPALK 67

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R++ P+            +  +  H  P LSL+  +  ED  +F   I RF +  +   +
Sbjct: 68  RADSPSDASPGAAPAAGFAKAR--HGTPMLSLDNAFAPEDFLEFTKSIRRFLRLDEAELL 125

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP--TIPRVLSLNIPEI 184
            F  EPKIDG  + + YE G FV  A RGDG  GED++  +       +PR L+   PE 
Sbjct: 126 RFVAEPKIDGLSVNLTYENGVFVRGATRGDGTEGEDITRNLETFSDKNLPRRLAAPFPEQ 185

Query: 185 IEVRGEVYISKNDFLALNDEMIA--------------VG---RKPYANPRNAASGILRRL 227
           IE+RGEV+++K DF+A  DE                 VG   R P ANPRNAA+G LR+L
Sbjct: 186 IEIRGEVFMTKADFIAFRDEQARLAEEREQRRERGEKVGPEIRIP-ANPRNAAAGSLRQL 244

Query: 228 NPTDITRY--LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYY 285
           +P +ITR   L  F +  G++S   A+     L ++   GF VN   R     H   ++ 
Sbjct: 245 DP-EITRQRPLRLFAYAQGESSAPVAETHSGYLARLAEWGFDVNPLSRALPDEHAAEAFQ 303

Query: 286 NEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345
            EM + R+ L YDIDG+VYK+D    Q +LG   R+PRW I+ KF  +QA TRLLDI IQ
Sbjct: 304 AEMAAQRAGLAYDIDGVVYKLDRLDWQARLGFVGRAPRWAIAWKFPAEQAMTRLLDIQIQ 363

Query: 346 IGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405
           +GRTG LTP A ++PVN+GG ++ +ATLHNED I             +D+R+GD V+++R
Sbjct: 364 VGRTGALTPRAVMQPVNVGGVMVQHATLHNEDEI-----------ARKDVRIGDTVILQR 412

Query: 406 AGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACS 465
           AG+VIP++V I+  +R  +A PF+FP+ CP C S  VR      G++V   RCTGGL C 
Sbjct: 413 AGDVIPQIVGIVPEKRPAEAVPFAFPTTCPACGSHAVR----PEGEVV--RRCTGGLICP 466

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525
           AQ +ERLKHFV R A +IEGLG++ +    +  +    ++ PADIF L R  +    ++ 
Sbjct: 467 AQTVERLKHFVGRTAMDIEGLGEENI---LRLHEEGL-VKSPADIFRLHRHAE----RMR 518

Query: 526 NILGFGDVS-----VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
              G+G  +     V NL  +I  RRN  LERFIF+LGIR +GA+ A+ LA++Y S   +
Sbjct: 519 GWEGWGKGAKTSKKVDNLLAAIEARRNPPLERFIFALGIRRIGAQNAKLLARHYHSLAEW 578

Query: 581 AQEI--NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
             ++    II     + L  I+   VG  IA  + EF+   RN  A++ L +EV+P    
Sbjct: 579 RAKMLAATIIGSEAREELGSIQG--VGPAIATELAEFFAEQRNRDALDDLAREVTPQDAE 636

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
             ++  S    K +VFTGTL++  R +A+    +LGA V+  +S+KTD ++VG + GSK 
Sbjct: 637 RLES-DSPFAGKVVVFTGTLERSSRDEAEAVADRLGAKVTKSVSKKTDFVVVGADAGSKA 695

Query: 699 EKAQQLGVKIMNEEQFLFL 717
           +KA +LGV+ + E ++  L
Sbjct: 696 KKAAELGVRTLTEPEWRAL 714


>gi|89094416|ref|ZP_01167356.1| DNA ligase [Oceanospirillum sp. MED92]
 gi|89081308|gb|EAR60540.1| DNA ligase [Oceanospirillum sp. MED92]
          Length = 674

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 278/723 (38%), Positives = 423/723 (58%), Gaps = 67/723 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SIEQ    L  L  ++++H+  YY    P + D+EYD L R    +    P+L  +ED 
Sbjct: 1   MSIEQ---HLQQLRDQLNHHNYQYYVLDDPEVPDAEYDRLFRELKKLESDNPELI-TED- 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G     +  +V+H +P LSL+  +N ED+ +F  RI      ++  +I +  E
Sbjct: 56  -SPTQRVGSTPLSAFSQVSHELPMLSLDNAFNDEDMEEFDRRIKDRLNMQE--TISYACE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  +++ YE+G  V  A RGDG +GED++  +R IPTIP ++   N P+ +EVRGE
Sbjct: 113 PKLDGIAVSLLYEQGLLVRGATRGDGSTGEDITQNVRTIPTIPLKLTGDNFPDRLEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-------PTDITRYLNFFVHG- 242
           +Y+ K  F ALND+  A G+K + NPRNAA+G LR+L+       P ++  Y    V G 
Sbjct: 173 IYMPKAGFDALNDKARATGQKTFVNPRNAAAGSLRQLDSRITASRPLEMCSYSVGVVEGG 232

Query: 243 --LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
              GK SEI A+        ++  GF +N  +       G + YY  +  +R TLPY+ID
Sbjct: 233 ALAGKHSEILAQ--------LKEWGFRLNPLLESVEGVAGCLDYYRRISELRDTLPYEID 284

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V+KVD+  LQ++LG  +R+PRW I+HKF  ++  T +  I+ Q+GRTG +TPVARLEP
Sbjct: 285 GVVFKVDQLELQQRLGFVSRAPRWAIAHKFPAQEELTSIRSIEFQVGRTGAVTPVARLEP 344

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG  ++NATLHN D I+ L           D+R GD V+++RAG+VIP+VV ++  +
Sbjct: 345 VFVGGVTVSNATLHNMDEIERL-----------DVRAGDTVVIRRAGDVIPQVVRVLHEK 393

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  D +    P  CPIC+S++ R      G+ VA  RC+GGL C AQ+ E LKHF SR A
Sbjct: 394 RPADTEAVIIPDACPICESKIER----IEGEAVA--RCSGGLYCEAQRKEALKHFASRKA 447

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GLG + ++     +     +  PAD++ L   QQT   ++E +   G  S  NL +
Sbjct: 448 MDIDGLGDKLIEMLVDLD----MVHNPADLYAL---QQTELARLERM---GPKSAENLVN 497

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   RN  L RF+++LGIR VG   ARSLA ++L       ++  +I  + +   +L+ 
Sbjct: 498 AIQASRNTELPRFLYALGIREVGEATARSLAMHFL-------DLPALIEASEE---ALLE 547

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTL 658
           VP VG I+A+ I  F+Q   NI  ++AL ++  VS S+   +   S  I  +  V TG L
Sbjct: 548 VPDVGPIVAKHIKSFFQQSHNIEVLDALREKAGVSWSVLETKDEESQPISGETWVLTGKL 607

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL-FL 717
           +++ R +A+ Y+ +LGA V+  +S KTD ++ G   GSKL+KA +LG+K M+E+ F+ FL
Sbjct: 608 EQMGRSEAKNYLLELGAKVAGSVSAKTDCVVAGPGAGSKLKKATELGIKTMDEDSFVSFL 667

Query: 718 LQQ 720
            +Q
Sbjct: 668 AEQ 670


>gi|254456450|ref|ZP_05069879.1| DNA ligase, NAD-dependent [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083452|gb|EDZ60878.1| DNA ligase, NAD-dependent [Candidatus Pelagibacter sp. HTCC7211]
          Length = 676

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 269/711 (37%), Positives = 423/711 (59%), Gaps = 49/711 (6%)

Query: 18  RKELSSLEQE----ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +KE+  L QE    ++ ++  YY  +KP+I D  YD LK    ++   +  LA  + P+ 
Sbjct: 3   KKEIQKLYQEKIKLLNKYNQYYYDKNKPLIDDKNYDELKISILSLEKKYNFLASKKSPSE 62

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
                G + + +  K  H +P LSL   ++ EDL  F  +I  F  + ++  ++++ EPK
Sbjct: 63  I---TGYKPSKNFKKSAHKVPMLSLANAFSEEDLINFEKKILNFLSENENFKLYYSAEPK 119

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192
           IDG   ++ Y+ GKFV    RGDG  GED+++ +  I  IP+ +S  N PE I++RGEV+
Sbjct: 120 IDGISASLTYKNGKFVKGLSRGDGKEGEDITSNLETIKDIPKKISNKNFPEEIDIRGEVF 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251
           I  +DF    D+        +ANPRNAASG LR+ +P D ++  L F  +  G   ++  
Sbjct: 180 IKNSDFENFKDK--------FANPRNAASGSLRQKDPNDTSKIPLKFIAYTFGYEKKLNI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q++ L+++   GF  N   +  +    ++  YNE++  R+ + +DIDG+VYKV+ F L
Sbjct: 232 DNQFDFLKRLNEWGFKTNPLNKLISGVKNLLINYNEIEKKRAEIDFDIDGIVYKVNNFKL 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK+LG  A +PRW ++HKF+  +A ++++ IDIQIGRTG LTPVA+++PVNIGG  ++NA
Sbjct: 292 QKRLGNVANAPRWAVAHKFSSNKAVSKIISIDIQIGRTGALTPVAKIKPVNIGGVQVSNA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED         ++MR  +D+RVGD V+V+RAG+VIP ++ + +N+R   +  F FP
Sbjct: 352 TLHNED---------EIMR--KDVRVGDTVVVERAGDVIPHILTVDINKRSKKSIKFVFP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
             CP C S+  ++ N  T K  A  RCT  G  C    +E+LKHFVS++AFNIEGLGK+ 
Sbjct: 401 KKCPSCGSKTTKEYNEITKKNDAVRRCTSEGYECEKISIEKLKHFVSKEAFNIEGLGKKI 460

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F+K +     IR+P DIF L         +IEN+ G+G +SV NL  SIN+++NISL
Sbjct: 461 IENFWKLK----LIRLPQDIFRLD------YNRIENLEGWGRLSVENLKYSINEKKNISL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER I++LGIRH+G E A+ L+K++ ++ NF +        N  ++  L+ V  +G+    
Sbjct: 511 ERLIYALGIRHIGLENAKLLSKFFKTFSNFKE------LSNKSNYNDLLNVDKIGETQVS 564

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I  F+ N  N   +  L KE+S      EK  +  ++N   + TG L  I R + +  +
Sbjct: 565 SIKSFFSNKINNEIINQLSKELSIKNTLIEKK-NGLLKNYTFMITGKLSGISRAEIKSLI 623

Query: 671 TQ-LGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQ 719
            +  G+ VS++ ++K D +I+GD P   K+E A++L +KI+N+ QFL +L 
Sbjct: 624 EENSGSTVSSV-TKKLDYLIIGDKPTKRKIETAKELRIKIINQSQFLKMLN 673


>gi|78485583|ref|YP_391508.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2]
 gi|123741582|sp|Q31G89|DNLJ_THICR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78363869|gb|ABB41834.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2]
          Length = 672

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/714 (37%), Positives = 410/714 (57%), Gaps = 50/714 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q +K    L + ++ H   YY    PII D +YD L ++   I    PD      P  P 
Sbjct: 2   QDQKAYQKLVESLNQHSYQYYVLDDPIISDPQYDVLYQKLLRIEDEHPDWIL---PESPS 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            +IG E       V H++P  SL+  +  ++L+ F+ RI    +  D  S+ F+ EPK+D
Sbjct: 59  QRIGDEPLKEFHTVRHAVPMYSLDNAFEDDELKSFLKRIEE--KLPDQKSLAFSAEPKMD 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  I IRYE G+ V A  RGDG  GEDV+  IR I ++P ++   N PE++EVRGEV++S
Sbjct: 117 GLAINIRYENGQLVQATTRGDGQVGEDVTHNIRPIYSVPLKLFGNNWPEVVEVRGEVFMS 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K+ F  LN+    +G K +ANPRNAA+G LR+L+      R+L+FF++G G+ S+ +   
Sbjct: 177 KSAFEQLNEHQQEIGGKIFANPRNAAAGSLRQLDSKVAAKRHLSFFLYGWGELSDDWQLP 236

Query: 254 QY--EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           QY  EM++++   G P N      +   G+ +YY ++++ RS LPY+IDG+VYK+++  L
Sbjct: 237 QYYSEMIEQLVEWGLPANPQSEIISGLEGMFAYYEKIQAKRSELPYEIDGIVYKLNDIKL 296

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  AR+PRW I+ KF  ++  T+LLDI++Q+GRTG +TPVARL+PV++GG +++NA
Sbjct: 297 QQQLGFTARAPRWAIARKFPAEEVWTKLLDIEVQVGRTGAITPVARLQPVSVGGVIVSNA 356

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D IK            +D+R+GD V+V+RAG+VIP+VV  I+ +R  + Q F  P
Sbjct: 357 TLHNMDEIK-----------RKDVRIGDTVIVRRAGDVIPEVVGPILTQRPENTQLFEMP 405

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S VV++L+       A  RCTGGL C AQ+   L HFVSR A +I+GLG + +
Sbjct: 406 QHCPECGSDVVKELDK------AVFRCTGGLVCPAQRKRALHHFVSRKAMDIQGLGDKLI 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D      D  + ++ P D + L      +  K+  +    + S  N+   I      +L 
Sbjct: 460 DQLV---DKGW-VKHPDDFYHL------TVEKLATLERMAEKSAQNVITGIQASLETTLA 509

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +FI+SLGI  VG   A++LA ++       Q E   +I  N+           VG+++A+
Sbjct: 510 KFIYSLGIPEVGEVTAKNLANHFKDLNAIKQAEFEELITLND-----------VGEVVAE 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            IV F++ P N   ++ LL      P+      N  S   NK +V TGTL ++ R +A+ 
Sbjct: 559 HIVNFFKEPHNESVIQGLLDAGMHWPTPETTLVNEDSPFANKVVVLTGTLSEMSRPEAKV 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +   GA ++  +S KTD +I G+  GSKL KA+ LGV +++E ++L ++ Q +
Sbjct: 619 LLEAQGAKITGSVSAKTDYVIAGEKAGSKLTKAESLGVAVLSEAEWLAMMPQQD 672


>gi|145589636|ref|YP_001156233.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|190359270|sp|A4SYV5|DNLJ_POLSQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145048042|gb|ABP34669.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 671

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/701 (39%), Positives = 405/701 (57%), Gaps = 50/701 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L+ E++  +  YY    P++ D EYD L R    I  A P    SE  +    ++GG   
Sbjct: 16  LQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAAHPQWVTSESLS---QRVGGTAL 72

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                VTH++P LSL   +   +L  F  R       +    + +  E K DG  I++RY
Sbjct: 73  KEFDSVTHAVPMLSLNNAFEDSELIAFDRRCREALHVE---HVAYAGELKFDGLAISLRY 129

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALN 202
           E G  V AA RGDG SGEDV+A I+ I  IP ++   NIPEI+EVRGEV++   DF  +N
Sbjct: 130 ENGTLVTAATRGDGASGEDVTANIKTIRAIPLKLTGKNIPEILEVRGEVFMYLKDFEKMN 189

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKGQYEML 258
            +   +G K +ANPRNAA+G LR+L+ + IT  R L+FF +GLG  +      K   E+L
Sbjct: 190 RQAAELGEKEFANPRNAAAGSLRQLD-SKITAKRPLSFFAYGLGALEPQSWLPKTHEELL 248

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
                LG PV +  R  ++   I+++YNE+ + R +LPYDIDG+VYKV+ F+ Q +LG  
Sbjct: 249 NAYVELGLPVCSERRVLHSVEEILAFYNEIGAKRDSLPYDIDGVVYKVNSFAEQAKLGFV 308

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           +R+PR+ ++HK+  ++A T +L ID+Q+GRTG +TPVARL PV +GG  +TNATLHNED 
Sbjct: 309 SRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTVTNATLHNEDE 368

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           +K            +D+R+GD V V+RAG+VIP+VV +I   R  DA+ F  PS CP+C 
Sbjct: 369 VK-----------RKDVRIGDTVSVRRAGDVIPEVVSVIKERRPSDAKEFVMPSRCPVCD 417

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S + R  +       A  RC+GGL C AQ+ + L HF  R A +IEGLG++ +D      
Sbjct: 418 SHIERLADE------AVARCSGGLFCGAQRKQALIHFAHRRALDIEGLGEKIVDQLVDQN 471

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                +R PAD++ L        T + N+   G+ S  NL  +IN+ RN +L RFIF+LG
Sbjct: 472 ----LVRTPADLYRL------GFTALANLERMGEKSADNLIQAINQSRNTTLARFIFALG 521

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG   A+ LA +Y       Q ++ ++  + ++ L+   V  VG ++A +I  F Q 
Sbjct: 522 IRHVGETTAKDLANHY-------QSMHALMDASVEELLT---VKDVGPVVADSITSFMQE 571

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
             N   +E LL      +   EK +S+ +  K  V TGT   + R +A++ + + GA V+
Sbjct: 572 AHNREVIEQLLAS-GMQLSVEEKIISAAVFGKTFVLTGTFPTMTRDEAKDLLEKAGAKVA 630

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +S+KTD ++ G + GSKL KA++LGV +++EE+ L LL+
Sbjct: 631 GSVSKKTDYVVAGTDAGSKLAKAEELGVPVIDEEEMLNLLK 671


>gi|262276434|ref|ZP_06054243.1| DNA ligase [Grimontia hollisae CIP 101886]
 gi|262220242|gb|EEY71558.1| DNA ligase [Grimontia hollisae CIP 101886]
          Length = 670

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 264/707 (37%), Positives = 415/707 (58%), Gaps = 46/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +++L SL+ +++YH   YY   KP + D+EYD + +   AI    P+L  ++ P+    +
Sbjct: 6   QQKLQSLKTQLNYHGHLYYVEDKPELPDAEYDRMMQELLAIEAKHPELVTADSPS---QR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG    +  +V H IP LSL+  ++  +L  F  R+       +     F+ EPK+DG 
Sbjct: 63  VGGAPLGAFEQVRHEIPMLSLDNAFDDGELEAFEKRLRDRLNTTE--RFVFSCEPKLDGL 120

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            +++ YE G  V AA RGDG  GE+++  +R I  +P +L     P  +EVRGEV++ K+
Sbjct: 121 AVSLMYENGVLVQAATRGDGTVGENITHNVRTIRNVPLLLQGEGWPVRLEVRGEVFMPKD 180

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
            F ALN++ I  G K +ANPRNAA+G LR+L+P    TR L F+ + +G  SE F     
Sbjct: 181 GFEALNEKNIKKGEKTFANPRNAAAGSLRQLDPKITATRPLRFYAYSVGVMSEAFGDSHV 240

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L++++  G P++  V++ +    + +YY ++ + R+ LPY+IDG+V KVD    Q++L
Sbjct: 241 GRLEQLKQWGIPLSPEVKKVDGLENVKAYYQDIAARRNDLPYEIDGVVIKVDNIDTQERL 300

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEEITVLQDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L            +++GD V+++RAG+VIP++V ++ + R  DA+   FP  CP
Sbjct: 361 ADEIARL-----------GVKIGDTVIIRRAGDVIPQIVSVVESRRPDDAKEVVFPHECP 409

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +CQS+V R      G+ VA  RCTGGL C AQ+ E +KHF SR A +I+GLG + ++   
Sbjct: 410 VCQSQVER----VEGEAVA--RCTGGLICRAQRKEAIKHFSSRKALDIDGLGDKIVEQLI 463

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + E     I+ PAD+F L   Q T   ++      G  S  NL D+++K +  +L RFI+
Sbjct: 464 EKE----LIKTPADLFKLTAGQVTMLDRM------GPKSAQNLVDALSKAKETTLPRFIY 513

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGIR VG   A +LA ++ +++   +               LI V  VG I+A+ +V F
Sbjct: 514 SLGIREVGEATAANLANHFFTFEAIREATEE----------QLIEVQDVGVIVAKHVVNF 563

Query: 616 YQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +    N   ++ALL      P+I + ++N    +  K +V TGTL ++ R+ A+  +  L
Sbjct: 564 FNEEHNKTVIDALLACGITWPAIEQPDENKPQPLAGKTVVLTGTLSQMSRNDAKAALQAL 623

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           GA V+  +S KTD++I G+  GSKL KAQQLG++I++E+  + LL +
Sbjct: 624 GAKVTGSVSAKTDLLIAGEAAGSKLTKAQQLGIEIVDEDGMMRLLSR 670


>gi|217970592|ref|YP_002355826.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
 gi|217507919|gb|ACK54930.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
          Length = 693

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 273/703 (38%), Positives = 396/703 (56%), Gaps = 51/703 (7%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           HD  YY    P I D+EYD L R   AI  A+P L RS D   P  ++GG+       V 
Sbjct: 30  HDHAYYVLDAPTIPDAEYDRLFRELQAIERAYPAL-RSAD--SPTQRVGGKALAQFATVR 86

Query: 91  HSIPTLSLEKIWNIEDLRKFI--TRIYR-FWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           H +P LS+    + E    F    R+ R     +DD ++ +  E K DG  I++RYE G 
Sbjct: 87  HRVPMLSISTETDTEASGAFAFDARVRRALGLDEDDAAVAYAAELKFDGLAISLRYEDGV 146

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V AA RGDG +GEDV++ +R +  IP  L    P ++EVRGE+Y+ ++DF  LN     
Sbjct: 147 LVQAATRGDGETGEDVTSNVRTVKAIPLRLLGEAPPVLEVRGEIYLRRDDFERLNARQAE 206

Query: 208 VGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265
            G K + NPRNAA+G +R+L+P    R  L+F+ +GLG+ +       Q E+L  +   G
Sbjct: 207 AGEKIFVNPRNAAAGSIRQLDPGIAARRPLSFYAYGLGEVAGWTLPATQTEVLDALAAFG 266

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            PV     Q     G+ +++  + ++R TLP+DIDG+VYKVD  +LQ+QLG   R PRW 
Sbjct: 267 LPVCGHRAQVRGAEGLAAFHARIGALRDTLPFDIDGVVYKVDALALQQQLGFVTREPRWA 326

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           ++HK+  ++A T L DI++Q+GRTG LTPVARLEPV +GG  +TNATLHN+D I      
Sbjct: 327 VAHKYPAQEAVTLLRDIEVQVGRTGALTPVARLEPVFVGGVTVTNATLHNQDEID----- 381

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF----SFPSFCPICQSRV 441
                  +D+R+GD V+V+RAG+VIP+VV  I+  R  +   F     FP+ CP+C S V
Sbjct: 382 ------RKDVRIGDWVIVRRAGDVIPEVVAPILERRGGELPRFVLLDRFPT-CPVCGSHV 434

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           VR      G+  A  RCTGGL C AQ+ + L HF  R A +IEGLG + +D        A
Sbjct: 435 VR------GEDEAVARCTGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVD----A 484

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             ++ P D++ L          + N+   G+ S  NL  +I K R  +L RFIF+LGIR+
Sbjct: 485 AIVKTPVDLYRL------GVLALANLERMGEKSAQNLLMAIEKSRGTTLARFIFALGIRN 538

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   AR LA+++        +++ +IA + D   +L +VP VG I+A+ I EF+  P N
Sbjct: 539 VGEATARDLARHF-------GKLDALIAADVD---ALQQVPDVGPIVAKCIAEFFAEPHN 588

Query: 622 ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
              +E L    V  + G  + +V+  +  K  V TGTL  + R +A+  +   G  V+  
Sbjct: 589 REVIEQLRAAGVHWAEGEPQGSVAGALAGKTFVLTGTLPTLSRDEAKARIEARGGKVAGS 648

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +S+KT  ++ G   GSKL+KAQ LG+ I++E+    LL + +T
Sbjct: 649 VSKKTHYVVAGAEAGSKLDKAQALGLAILDEDGLRVLLNETDT 691


>gi|90416525|ref|ZP_01224456.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207]
 gi|90331724|gb|EAS46952.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207]
          Length = 677

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 270/719 (37%), Positives = 410/719 (57%), Gaps = 58/719 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ R E   L+ E++ H+  YY   +P I DSEYD   RR   I    P+L   + P+ 
Sbjct: 5   LEQVRAEYEQLKDELNQHNHRYYVLDEPTIPDSEYDRSMRRLQDIEQQHPELLSDDSPS- 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GG    S  +V+H++P LSL+  ++ E+L  F  RI      KDD  I +  EPK
Sbjct: 64  --QRVGGAALPSFSQVSHAVPMLSLDNAFSEEELEAFDRRISDRLNYKDDQQIDYVCEPK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ Y +G  V  A RGDG  GED++A +R I +IP R+    IPE++EVRGE+Y
Sbjct: 122 LDGVAVSLLYNQGLLVRGATRGDGKVGEDITANVRTINSIPLRLNGDGIPELLEVRGEIY 181

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N   IA G KP+ NPRNAA+G LR+L+     +R L    + +G+    F 
Sbjct: 182 LPRGGFDKINAAAIAKGDKPFVNPRNAAAGSLRQLDSKITASRPLEMCAYSVGQ----FQ 237

Query: 252 KGQ-----YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+       ML+ +   GF +N  V          +YY  M+  R  LPYDIDG+VYKV
Sbjct: 238 GGETPDSHLNMLKALGSWGFKINTYVEAVQGIAACEAYYERMQKRRDQLPYDIDGIVYKV 297

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++  LQ++LG  A++PRW I+ KF  ++  T+L+D++ Q+GRTG LTPVARL PV +GG 
Sbjct: 298 NDLGLQQRLGFVAKAPRWAIARKFPAQEEMTQLVDVEFQVGRTGALTPVARLAPVFVGGV 357

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I  L            + +GD V+++RAG+VIPKV  ++++ R  +AQ
Sbjct: 358 TVSNATLHNGDEIARL-----------GLCIGDTVIIRRAGDVIPKVAAVVLDRRPENAQ 406

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP  CP+CQS V R      G+ VA  RC+GGL C AQ  E +KHF SR A +I+GL
Sbjct: 407 PIVFPENCPVCQSSVRR----VEGEAVA--RCSGGLFCGAQSKEAIKHFASRKAMDIDGL 460

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++      D    I  PAD++ L      S TKI ++   G+ S  NL DSI   R
Sbjct: 461 GDKLVELLV---DRGL-IYSPADLYEL------SATKIADLERMGEKSAQNLIDSIAVSR 510

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L +F+F+LGIR VG    ++LA+ + S       +  II    D   +L+ V  +G 
Sbjct: 511 QTTLAKFLFALGIREVGEATGQTLARNFGS-------LEAIIEAEQD---ALLEVDDIGP 560

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQ 662
           ++A  I +F++NP N+  + AL +     +   + +++++    ++ +  V TG ++ + 
Sbjct: 561 VVAYYIRDFFRNPDNLSIINALRES---GVSWDDIDITAQDSQPLKGQTWVLTGGMEIMS 617

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           R +A++ + +LGA V+  +S KT  ++ G   GSKL KAQ L + + +EEQFL  L+ +
Sbjct: 618 RAEAKDRLQELGAKVAGSVSAKTSQVVAGPGAGSKLTKAQSLDIPVFDEEQFLAFLEGH 676


>gi|254468809|ref|ZP_05082215.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
 gi|207087619|gb|EDZ64902.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
          Length = 669

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 267/707 (37%), Positives = 417/707 (58%), Gaps = 49/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K++S L+  I  HD CYY    P I D EYD+L R    I  + P+L     P+ P  ++
Sbjct: 7   KKISYLKSVIQEHDHCYYVLDDPQISDHEYDSLLRELKNIEDSNPELIT---PDSPTQRV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG       ++ H+ P LSL   + I +L  F  RI       D N + F  E K DG  
Sbjct: 64  GGSPISEFNQIQHNKPMLSLGNAFGINELEAFNKRINDTL---DVNDVEFNAELKFDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +TI YE G   YAA RGDG+ GEDV+  I+ I TIP ++   N P   EVRGEV + KND
Sbjct: 121 VTILYENGLMKYAATRGDGNVGEDVTHNIKTIKTIPLKLYGDNHPRTFEVRGEVLMDKND 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQY 255
           F  LN+  I++G+K +ANPRNAA+G LR+L+P     R L F+ + LG+  + +      
Sbjct: 181 FKELNEYQISLGQKTFANPRNAAAGSLRQLDPKITAKRKLKFYAYSLGQVDQDLELTNHT 240

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L+ +   G P+++  ++    + +  +Y ++   R+ LP+DIDG+VYKV+    Q+ L
Sbjct: 241 DILKYIHNSGIPISSYSQRVVGINQMQHFYEDILKKRNDLPFDIDGIVYKVNSIKNQENL 300

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +++PRW I++KF  ++A T + DI++Q+GRTG++TPVARL+PV + G  +TNATLHN
Sbjct: 301 GYVSKAPRWAIAYKFPAEEAETVVNDINVQVGRTGVITPVARLQPVFVSGVTVTNATLHN 360

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED         +++R  +DIR+GD V+V+RAG+V+P++V +I  +R  +A+ F  P +CP
Sbjct: 361 ED---------EMLR--KDIRIGDSVIVRRAGDVVPEIVRVIKEKRPSNAKVFEMPQYCP 409

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           IC S+V+R      G+  AA RCTG L C AQ  + + H+VSR A NIEGLG + +D FF
Sbjct: 410 ICNSQVIR----IDGE--AAQRCTGQLKCEAQAKQAISHYVSRKAMNIEGLGAKIIDHFF 463

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+  +DI+ L   +      I+ + GFG+ S  NL ++I   +  +L +FI+
Sbjct: 464 EKG----LIKNISDIYHLDYEE------IQKMEGFGERSAENLKEAIESSKKTTLAKFIY 513

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR+VG   ++ + K   +       ++N++  + DD+L    +  VG ++AQ++ +F
Sbjct: 514 ALGIRNVGEATSKDIVKKLGT-------LDNVMKASIDDFL---EINDVGPVVAQSLHQF 563

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +Q   N   +  ++ E         +NVS++  +  +  V TGTL+   R + +E +   
Sbjct: 564 FQEDENKAIINNIV-EFGVKWEDQAQNVSNDQKLNQQTFVVTGTLENFSRDEIKELIENN 622

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +S+KT  +I+GDNPGSK +KA +LGVK++NE+Q + LL +
Sbjct: 623 GGKVSGSVSKKTSYVIIGDNPGSKADKAAELGVKVINEKQLMELLNE 669


>gi|307261779|ref|ZP_07543445.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306868597|gb|EFN00408.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 676

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 268/709 (37%), Positives = 421/709 (59%), Gaps = 58/709 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   ++ P     ++G
Sbjct: 11  QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 67

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH IP LSL+  ++ E+L  F+ R+  +   +D +++ F  EPK+DG  +
Sbjct: 68  AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 126

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED+++ IR I  IP  L++ N P  +EVRGEV++ +  F
Sbjct: 127 SILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 186

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254
             LN+  +  G K +ANPRNAA+G LR+L+P  ITR     LN +  G+ ++ +      
Sbjct: 187 ETLNERALEKGEKTFANPRNAAAGSLRQLDP-KITRQRPLVLNAYGIGVYESDDELPVTH 245

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 246 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 305

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 306 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 365

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 366 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 414

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 415 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 468

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L   + T+  ++E +   G+ S  N  +SI K +N +L RF+
Sbjct: 469 MERE----LVHTPADLFKL---EHTTLMRLERM---GEKSAQNALNSIEKAKNTTLARFL 518

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++          +N+ A     +  L  V  VG+++A  IV 
Sbjct: 519 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 568

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668
           F+Q P N+  VE L+     S G H +NV       + ++ K +V TGTL ++ R +A+ 
Sbjct: 569 FWQEPHNVAVVEDLI-----SQGVHWQNVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 623

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +   G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L
Sbjct: 624 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIAL 672


>gi|190570889|ref|YP_001975247.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019404|ref|ZP_03335210.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|254782310|sp|B3CPS1|DNLJ_WOLPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190357161|emb|CAQ54574.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994826|gb|EEB55468.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 651

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 285/695 (41%), Positives = 413/695 (59%), Gaps = 62/695 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L+ +I+YH+  YYQ SKP I D+EYD LK++  AI    P+   ++D       +G   +
Sbjct: 11  LQNQINYHNILYYQKSKPEISDAEYDELKKKLAAIE---PEAYATQDS------VGAPPD 61

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               KV H  P LSLE  ++ + + KF+++I RF      + I    EPKIDG   +  Y
Sbjct: 62  ERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIA---DEIEILCEPKIDGLSFSAIY 118

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E GKFV AA RGDG  GEDV+  +  I   P+ L  ++   +EVRGE+YIS +DFL LN+
Sbjct: 119 EDGKFVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-DVQGRLEVRGEIYISNSDFLKLNE 177

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
                    +ANPRNAA+G L++LN  +IT  R L +F + L    E   K Q E+L+K+
Sbjct: 178 ------NNEFANPRNAAAGSLKQLN-ANITAKRPLRYFAYSLIGGIE---KSQSEVLEKL 227

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LGF VN      ++ +G++ +YNE+   R  L YDIDG+VYKV++  LQ +LG   ++
Sbjct: 228 EKLGFCVNEHRSLTSSLNGMLKFYNEIYDCRYNLDYDIDGIVYKVNDLVLQSRLGSTHKA 287

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK 
Sbjct: 288 PRSALAYKFSAIYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIK- 346

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR GD V +KRAG+VIP++V +    RH +   F FP  CP C S+V
Sbjct: 347 ----------RKDIREGDVVTIKRAGDVIPQIVKVDEGSRHTNMPEFVFPDICPECGSKV 396

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
             +          A RC     C AQ +E+LKHFVS+DAF+I GLG++Q+ FF+  E   
Sbjct: 397 QIE--------GVAVRCPEEFNCKAQIVEKLKHFVSKDAFDIVGLGEKQIKFFYDLE--- 445

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             IR   DIF L+ R +  + K  +  G+G+ S+ NL  +I  RR ISL+RFIFSLGIR 
Sbjct: 446 -LIRQIPDIFILEERLKEFSLKEHH--GWGEKSIANLLSAIQSRRVISLDRFIFSLGIRF 502

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G  +A  LA YY+SY N+   ++     +ND  + L+ +  +G+ +A+++  F+   RN
Sbjct: 503 IGQVVAELLANYYVSYDNWYNSMS-----SND--VELVGIDGIGEKVAESLKSFFSQERN 555

Query: 622 ICAVEALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           I  +  L    ++ P       +  S + NK +VFTG L+ + R +A+     LGA +S+
Sbjct: 556 IKMLNDLTAYLQILPV---SSNSSDSFLNNKIIVFTGKLRAMSRGEAKVRAKVLGAKISS 612

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            LS KTD +I G++PGSK +KA +LGV+I++EEQ+
Sbjct: 613 SLSTKTDYLIAGEDPGSKYKKAMELGVEILDEEQW 647


>gi|307257368|ref|ZP_07539138.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306864218|gb|EFM96131.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 682

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 269/709 (37%), Positives = 421/709 (59%), Gaps = 58/709 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   ++ P     ++G
Sbjct: 17  QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH IP LSL+  ++ E+L  F+ R+  +   +D +++ F  EPK+DG  +
Sbjct: 74  AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED+++ IR I  IP  L++ N P  +EVRGEV++ +  F
Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254
            ALN+  +  G K +ANPRNAA+G LR+L+P  ITR     LN +  G+ ++ +      
Sbjct: 193 EALNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPVTH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L   + T+  ++E +   G  S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKL---EHTTLMRLERM---GGKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++          +N+ A     +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668
           F+Q P N+  VE L+     S G H +NV       + ++ K +V TGTL ++ R +A+ 
Sbjct: 575 FWQEPHNVAVVEDLI-----SQGVHWQNVIQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +   G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L
Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLVKAQELGVKVLTEQEFIAL 678


>gi|307250556|ref|ZP_07532498.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857372|gb|EFM89486.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 682

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 267/709 (37%), Positives = 421/709 (59%), Gaps = 58/709 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   ++ P     ++G
Sbjct: 17  QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH IP LSL+  ++ E+L  F+ R+  +   +D +++ F  EPK+DG  +
Sbjct: 74  AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED+++ IR +  IP  L++ N P  +EVRGEV++ +  F
Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254
             LN+  +  G K +ANPRNAA+G LR+L+P  ITR     LN +  G+ ++ +      
Sbjct: 193 ETLNERALEKGEKTFANPRNAAAGSLRQLDP-KITRQRPLVLNAYGIGVYESDDELPVTH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L   + T+  ++E +   G+ S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKL---EHTTLMRLERM---GEKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++          +N+ A     +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668
           F+Q P N+  VE L+     S G H +NV       + ++ K +V TGTL ++ R +A+ 
Sbjct: 575 FWQEPHNVAVVEDLI-----SQGVHWQNVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +   G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L
Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIAL 678


>gi|303250616|ref|ZP_07336813.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252937|ref|ZP_07534825.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|302650604|gb|EFL80763.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859575|gb|EFM91600.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 682

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 268/709 (37%), Positives = 422/709 (59%), Gaps = 58/709 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   ++ P     ++G
Sbjct: 17  QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH IP LSL+  ++ E+L  F+ R+  +   +D +++ F  EPK+DG  +
Sbjct: 74  AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED+++ IR I  IP  L++ N P  +EVRGEV++ +  F
Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254
            ALN+  +  G K +ANPRNAA+G LR+L+P  ITR     LN +  G+ ++ +      
Sbjct: 193 EALNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPATH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L   + T+  ++E +   G+ S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKL---EHTTLMRLERM---GEKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++          +N+ A     +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668
           F+Q P N+  VE L+     S G H ++V       + ++ K +V TGTL ++ R +A+ 
Sbjct: 575 FWQEPHNVTVVEDLI-----SQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +   G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L
Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIAL 678


>gi|307248328|ref|ZP_07530352.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306855149|gb|EFM87328.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 682

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 268/709 (37%), Positives = 421/709 (59%), Gaps = 58/709 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   ++ P     ++G
Sbjct: 17  QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH IP LSL+  ++ E+L  F+ R+  +   +D +++ F  EPK+DG  +
Sbjct: 74  AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED+++ IR I  IP  L++ N P  +EVRGEV++ +  F
Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254
            ALN+  +  G K +ANPRNAA+G LR+L+P  ITR     LN +  G+ ++ +      
Sbjct: 193 EALNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPATH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L     T+  ++E +   G+ S  N  +SI K +N +L RF+
Sbjct: 475 MECE----LVHTPADLFKL---DHTTLMRLERM---GEKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++          +N+ A     +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668
           F+Q P N+  VE L+     S G H ++V       + ++ K +V TGTL ++ R +A+ 
Sbjct: 575 FWQEPHNVAVVEDLI-----SQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +   G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L
Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIAL 678


>gi|114319842|ref|YP_741525.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312282|sp|Q0AAV2|DNLJ_ALHEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114226236|gb|ABI56035.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
          Length = 673

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 269/715 (37%), Positives = 406/715 (56%), Gaps = 59/715 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QAR E  +L +EI  HD  YY    P+I D+EYDAL     A+    P+L     P+ P 
Sbjct: 9   QARIE--ALRREIREHDHRYYVLDAPVIADAEYDALMAELQALEAEHPELI---TPDSPS 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++ G       +VTH+ P LSL+  +   DL +F  R+    Q    + + +  EPK+D
Sbjct: 64  QRVAGRPAEGFGEVTHAEPMLSLDNAFEEADLAEFDRRVR---QALGLDPVVYVAEPKLD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  ++IRYE G+ V A  RGDG  GE ++  +R I ++P R+     P ++EVRGEV I 
Sbjct: 121 GLSVSIRYEDGRLVRAGTRGDGRVGEAITENVRTIRSVPLRLRGEGWPPVMEVRGEVVIR 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           + DF  LN++ +A G +P+ANPRNAA+G LR+L+P     R L FF  G+     + A  
Sbjct: 181 RADFERLNEQRLADGERPFANPRNAAAGSLRQLDPRITARRRLTFFTFGVAAAGRL-AAS 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E+L K+   GF VN  V +     G   YY  + + R  L ++IDG+VYKVD+   ++
Sbjct: 240 HHEVLDKLAGWGFRVNERVERVRGLDGCREYYQRLLADRDELSFEIDGVVYKVDDLDARE 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I+ K   ++A+T +  I   +GRTG +TPVA LEPV +GG  ++ ATL
Sbjct: 300 ELGFTARAPRWAIAWKLPAQEATTVVRRILPSVGRTGAITPVAELEPVGVGGVTVSRATL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D ++            +D+R GD V+V+RAG+VIP++  ++  +R   A+P++ P+ 
Sbjct: 360 HNLDEVR-----------RKDVRKGDTVMVRRAGDVIPEITAVVTEKRPEGAEPWAMPAE 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V+R L+ +     A HRC GGL C AQ+   L HF SR A +I+GLG++ +  
Sbjct: 409 CPVCGSEVLR-LDDE-----AVHRCMGGLYCPAQREGALLHFASRKALDIDGLGEKVVSQ 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       +R PAD+FTL+  Q     ++      GD S  NL  +++K R  +L RF
Sbjct: 463 LVER----GMVRSPADLFTLEHCQLAGLERM------GDKSADNLVAALDKARRTTLPRF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGI+HVG   AR LA+++ S +          A  N D  +L   P VG ++AQAI 
Sbjct: 513 LYALGIQHVGEVTARRLAEHFGSLE----------AIMNADESALAETPDVGPVVAQAIA 562

Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            F+  P N   V+AL       +EV P+  R E+ ++     +  V TGTL  + R +A+
Sbjct: 563 HFFAEPHNREVVQALRAAGVTWEEVDPA-ERGEQPLA----GRTFVLTGTLSGMTRDEAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             +  LGA VS  +S+KTD ++ G+  GSKL KA+ LGV++++E+    LLQ++ 
Sbjct: 618 AALEALGARVSGSVSKKTDYLVAGEKAGSKLAKAESLGVEVLDEQALQALLQEHG 672


>gi|103486042|ref|YP_615603.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256]
 gi|123078573|sp|Q1GVQ2|DNLJ_SPHAL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|98976119|gb|ABF52270.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256]
          Length = 714

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 281/730 (38%), Positives = 415/730 (56%), Gaps = 57/730 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +L+  +A  EL  L ++I++H+  Y+    P I D++YDAL RR  AI  AFP L R+
Sbjct: 4   VGSLTEAEAANELMRLAKQIAHHNKLYHAEDSPEISDADYDALVRRNTAIEEAFPHLIRA 63

Query: 69  EDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           + PN     +G  +  S L KVTH+   +SL+  +  ED+ +F  R+ RF    +   + 
Sbjct: 64  DSPN---RLVGAAVEASPLAKVTHAQRMMSLDNAFAAEDVEEFAARVRRFLNLDEGEPLA 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT E KIDG   ++RYEKG  V AA RGDG  GEDV+  +R I  IP+ L  +IP+I E+
Sbjct: 121 FTAEDKIDGLSCSLRYEKGVLVQAATRGDGTVGEDVTPNVRTIADIPQNLKGDIPDIFEI 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNFFVH 241
           RGEVY++K DF ALN  ++A    P     +ANPRNAA+G LR+ + +   +R L F  H
Sbjct: 181 RGEVYMAKADFAALNARLLAEADDPDKARQFANPRNAAAGSLRQKDASVTASRPLRFLAH 240

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G G+ S + A  QY +++ +   G PV+  +++ +    ++ +Y  +++ R+ LPYDIDG
Sbjct: 241 GWGEVSALPADTQYAVMKAIESWGVPVSPLLKRCDGVADLLDHYRMIEAERAELPYDIDG 300

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD    Q +LG  AR+PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL PV
Sbjct: 301 VVYKVDRLDWQARLGFVARAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPV 360

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG +++N TLHN D I  L            +R GDR++V+RAG+VIP+VV+ +   R
Sbjct: 361 TVGGVVVSNVTLHNRDEIARL-----------GVRPGDRIIVQRAGDVIPQVVENLT--R 407

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               +P+ FP  CP+C S  V     + G++    RCTGGL C+AQ+ ERL+HFVSR A 
Sbjct: 408 DEPREPYVFPDHCPVCGSEAV----AEDGEVDV--RCTGGLICNAQKFERLRHFVSRGAL 461

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG++ +  F +     +  + PADIF L+  ++    +     G+ + SV NL  +
Sbjct: 462 DIEGLGEKSIAEFLEL---GWLEKGPADIFRLKSHREELLAR----EGWKERSVDNLLAA 514

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF---AQEINNIIAHNND----- 593
           I  +R     R +F LGIRHVGA  AR L K           A E+   +  N       
Sbjct: 515 IEAKRQPDAARLLFGLGIRHVGAVTARDLLKGIGDIARLPGKAAELRAWVEANPRIEGES 574

Query: 594 ------------DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
                         +  +R   +G  +A+A+ +F+  P N    + LL EVSP     E 
Sbjct: 575 EGKYAARRLEAIKAILDVRADGIGPAVAEALGDFFHEPHNRVLWDDLLSEVSPPPYVVET 634

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
              SE+  K +VFTG L+ + R +A+     LGA  +  +S KTD+++ G   GSKL++A
Sbjct: 635 R-DSEVSGKTVVFTGKLETMSRDEAKAQAEALGAKAAGSVSAKTDLVVAGPGAGSKLKQA 693

Query: 702 QQLGVKIMNE 711
             LG+++++E
Sbjct: 694 ASLGIRVIDE 703


>gi|326403263|ref|YP_004283344.1| DNA ligase [Acidiphilium multivorum AIU301]
 gi|325050124|dbj|BAJ80462.1| DNA ligase [Acidiphilium multivorum AIU301]
          Length = 682

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/677 (39%), Positives = 394/677 (58%), Gaps = 44/677 (6%)

Query: 41  PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100
           PI+ D+ YDAL+R   ++  A PDLA +      L+++G   + +  KV H IP LSL+ 
Sbjct: 38  PIMDDAAYDALRREAASLRAAHPDLAAA------LDQVGTTPSGAFGKVRHRIPMLSLDN 91

Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160
           ++   D  +F   I RF        + F  EPKIDG  I++ YE  +FV  A RGDG  G
Sbjct: 92  VFEPADFVEFCASIRRFL-GLGTAPLAFVAEPKIDGLSISLTYENRRFVRGATRGDGTEG 150

Query: 161 EDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
           EDV+  +R +  +P  L  + P+ IE+RGEVY++K DF+ALN        + +ANPRNAA
Sbjct: 151 EDVTENLRTLRELPATLPDDAPDFIEIRGEVYMTKTDFIALNQGQA----RQFANPRNAA 206

Query: 221 SGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFH 279
           +G LR+L+P    +R L+ F +  G +SE   +  ++ L  +R  GFPVN    + +   
Sbjct: 207 AGSLRQLDPAVTASRRLSLFAYARGASSEAVGETHWDYLATLRRWGFPVNPLAERVSE-A 265

Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL 339
               +   +   R+ L YDIDG+VYK+D+ +LQ++LG   R+PRW ++ KF  ++A T L
Sbjct: 266 AAEPFQRSIGERRAGLDYDIDGVVYKIDDLALQERLGFAGRAPRWAVAWKFPAERALTTL 325

Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGD 399
             IDIQ+GRTG LTP ARL+PVN+GG L+++ATLHNED I             +D+R+GD
Sbjct: 326 RGIDIQVGRTGALTPRARLDPVNVGGVLVSHATLHNEDEI-----------ARKDVRIGD 374

Query: 400 RVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459
            V ++RAG+VIP+++  +   R  D+ PF FP  CP C +  +R      G++V   RCT
Sbjct: 375 TVELQRAGDVIPQILRALPERRPADSVPFVFPDHCPACGALAIR----PAGEVV--RRCT 428

Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
           GGL+C AQ +ERL HF SR AF+IEG+G++ +  F         +  PADIFTL+ R+  
Sbjct: 429 GGLSCPAQVVERLIHFCSRLAFDIEGMGEKTVQEFHG----LGWLESPADIFTLRDRE-- 482

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
               I  + G+G+VS   L  +I+ RR ISL RFI++LGIR +G + A+ LA++Y SY  
Sbjct: 483 --AAIAALEGWGEVSARKLIAAIDARRRISLARFIYALGIRRIGEQNAKLLARHYSSYAV 540

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP--SIG 637
           + +++       +D  L L  +  +G  IA+ +  F+  P N      LL  + P  +I 
Sbjct: 541 WRRQMEEAGVIGSDARLELGSISGIGPSIAEELAGFFAEPHN----RDLLDRLVPILTIE 596

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
                    +  K +VFTGTL+ + R +A+     LGA V+  +S+KTD ++VG + GSK
Sbjct: 597 DEVAAAGGALAGKTIVFTGTLESLTRPEAKARAEALGARVTESVSKKTDFVVVGADAGSK 656

Query: 698 LEKAQQLGVKIMNEEQF 714
             KA  LGV +++E +F
Sbjct: 657 AAKATSLGVTVLSEAEF 673


>gi|89900985|ref|YP_523456.1| DNA ligase [Rhodoferax ferrireducens T118]
 gi|123397178|sp|Q21WC8|DNLJ_RHOFD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89345722|gb|ABD69925.1| DNA ligase, NAD-dependent [Rhodoferax ferrireducens T118]
          Length = 690

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 264/712 (37%), Positives = 398/712 (55%), Gaps = 50/712 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L + +  H   YY    P I D+EYD + +   AI    P+L     P+ P  ++GG
Sbjct: 19  VAQLRRALHEHAHHYYVEDAPTIPDAEYDRMFQELQAIEAQHPELI---TPDSPTQRVGG 75

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGT 137
                   V H++P LS+    + E    R F TR+ R     +   ++ +  EPK DG 
Sbjct: 76  RALEQFASVRHAVPMLSIRTETDTEASGARNFDTRVRRELGLDEAAPAVAYVAEPKFDGL 135

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + +RYE G  V AA RGDG  GEDV+  +R I  IP  L  + P I+EVRGEVY+ ++D
Sbjct: 136 AMNLRYESGILVQAATRGDGEVGEDVTQNVRTIGQIPLRLPADAPSILEVRGEVYMRRDD 195

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG--- 253
           F  LN++  A G+K + NPRNAA+G +R+L+P     R L+FF +GLG+ +   A G   
Sbjct: 196 FEKLNEQQRARGQKTFVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGEVTPEQAGGPAF 255

Query: 254 --QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE+LQ ++  GFPV+  V  A     +V+YY  +   R  LP+DIDG+VYKV+  +L
Sbjct: 256 GTHYELLQALKTWGFPVSALVGLAQGATELVAYYESIARQRDALPFDIDGVVYKVNSLAL 315

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+++G   R PRW ++HKF  ++  T +LDID+Q+GRTG LTPVA+L PV +GG  +TNA
Sbjct: 316 QRRMGFVTREPRWAVAHKFPAQEQFTTVLDIDVQVGRTGKLTPVAKLAPVFVGGVTVTNA 375

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED  +            +D+RVGD V+V+RAG+VIP+VV +++++R P A  F+ P
Sbjct: 376 TLHNEDEAR-----------RKDVRVGDTVIVRRAGDVIPEVVSVLLDKRQPGATEFTMP 424

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S  VR+     G++   +RCTGGL CSAQ+ + + HF  R A  +EGLG++ +
Sbjct: 425 RQCPVCGSAAVRE----EGEV--DYRCTGGLFCSAQRKQAILHFAQRRAVEVEGLGEKLV 478

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D           IRI  D++ L        T + ++    D S  N+  ++ K +  +L 
Sbjct: 479 DQLVDGH----VIRILPDLYRL------GLTALASLDRMADKSAQNILQALEKSKQTTLP 528

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+F LGIRHVG   A+ LA+++           ++ A  +     L++V  +G I+AQ+
Sbjct: 529 RFLFGLGIRHVGEATAKELARHF----------GSLDAVMDASLEQLLQVNDIGPIVAQS 578

Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +  F+  P N   VE L    V+   G       + +  K  V TGTL  + R +A++ +
Sbjct: 579 LRTFFDQPHNREVVEQLRACGVTWQEGPPAPVTPTPLSGKTFVITGTLPSMSRDEAKDLI 638

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              G  V+  +S+KT  ++ G   GSKL KAQ+LGV +++E     LL  ++
Sbjct: 639 EAAGGKVAGSVSKKTTFVVAGTEAGSKLTKAQELGVAVLDEAGLKELLDGHS 690


>gi|307246220|ref|ZP_07528301.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307255203|ref|ZP_07537019.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259638|ref|ZP_07541362.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306852829|gb|EFM85053.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306861831|gb|EFM93809.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866283|gb|EFM98147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 682

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 267/709 (37%), Positives = 421/709 (59%), Gaps = 58/709 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   ++ P     ++G
Sbjct: 17  QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH IP LSL+  ++ E+L  F+ R+  +   +D +++ F  EPK+DG  +
Sbjct: 74  AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED+++ IR +  IP  L++ N P  +EVRGEV++ +  F
Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254
            ALN+  +  G K +ANPRNAA+G LR+L+P  ITR     LN +  G+ ++ +      
Sbjct: 193 EALNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPVTH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L   + T+  ++E +   G  S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKL---EHTTLMRLERM---GGKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++          +N+ A     +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668
           F+Q P N+  VE L+     S G H ++V       + ++ K +V TGTL ++ R +A+ 
Sbjct: 575 FWQEPHNVTVVEDLI-----SQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +   G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L
Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIAL 678


>gi|261496584|ref|ZP_05992964.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307787|gb|EEY09110.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 685

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 273/712 (38%), Positives = 416/712 (58%), Gaps = 56/712 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++ ++ Q +  ++  Y+    P + D+EYD L      +    P+L  ++ P     ++
Sbjct: 20  EKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPT---QRV 76

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ EDL  F+ R+  +      + + F  EPK+DG  
Sbjct: 77  GAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYI-TASPSQLEFCCEPKLDGLA 135

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           ++I YE G    AA RGDG +GE+++A IR I  IP  L + N P  +EVRGEV++ ++ 
Sbjct: 136 VSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSG 195

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKG 253
           F  LN++ +A G K +ANPRNAA+G LR+L+P  ITR     LN +  G+ ++ +     
Sbjct: 196 FNELNEKALAKGEKTFANPRNAAAGSLRQLDP-KITRQRPLVLNAYGIGVYESDDELPAT 254

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E LQ ++ LG PVNN +R       +++YY E+++ R TL YDIDG V KV++ +LQ+
Sbjct: 255 HFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQE 314

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +RS RW I++KF  ++  T L ++D Q+GRTG +TPVA+LEPV + G  ++NATL
Sbjct: 315 QLGFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATL 374

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            I +GD V+++RAG+VIP++  +++  R  +A+   FP+ 
Sbjct: 375 HNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFPTA 423

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CPIC S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ 
Sbjct: 424 CPICHSAVTR----VEGEAVA--RCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQ 477

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     I  PAD+F L     T+  ++E +   G+ S  N  +SI K +N +L RF
Sbjct: 478 LMARE----LIETPADLFKL---DHTTLMRLERM---GEKSAQNALNSIEKAKNTTLPRF 527

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +FSLGIR VG   A +LA ++ S +   Q            +  L  V  VG+++A  IV
Sbjct: 528 LFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANRIV 577

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-----ENKKLVFTGTLQKIQRHKAQE 668
            F+Q P N+  VE L+ +      R E  V +EI     ++K +V TGTL ++ R +A+ 
Sbjct: 578 SFWQEPHNVEVVEDLIAQGV----RWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKA 633

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  VS  +S KTD +I G+  GSKL KAQ+LG++I++E+QF+ L Q 
Sbjct: 634 LLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIELTQH 685


>gi|301155433|emb|CBW14899.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1]
          Length = 667

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 268/707 (37%), Positives = 417/707 (58%), Gaps = 55/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++ +L Q++  ++  Y+    P I D+EYD L  +  A+  A P+L  ++ P     +
Sbjct: 4   QQQIDTLRQDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELITADSPT---QR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G +      ++ H IP LSL+  ++ E+   F+ RI     +  D  + F  EPK+DG 
Sbjct: 61  VGAKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLPD-PLTFCCEPKLDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            ++I Y  G    AA RGDG +GED++A IR I  IP ++L  N P  +EVRGEV++   
Sbjct: 120 AVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLQLLMDNPPARLEVRGEVFMPHE 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQ 254
            F  LN + +  G K +ANPRNAA+G LR+L+P   + R L    +G+G    +      
Sbjct: 180 GFERLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGIAEGVDLPNTH 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +LQ++
Sbjct: 240 YDRLQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQEK 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +++PRW I++KF  ++  TRL D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 300 LGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L           DI +GD V+++RAG+VIP+++ ++ + R  DA+P  FP  C
Sbjct: 360 NGDEIERL-----------DIAIGDMVVIRRAGDVIPQIIGVLHDRRPADARPIVFPETC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S +VR      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++  
Sbjct: 409 PVCDSAIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     I  PAD+F L     T+ T++E +   G  S  N   S+ K +N +L RF+
Sbjct: 463 VDRE----LIHTPADLFKLDL---TALTRLERM---GTKSAENALASLEKAKNTTLARFV 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A +LA ++ + +          A  N D  +L +VP VG+++A  I+ 
Sbjct: 513 FALGIREVGEATALNLANHFKTLE----------ALQNADLEALQQVPDVGEVVANRILA 562

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IEN----KKLVFTGTLQKIQRHKAQE 668
           F+  P N+  V  L+ +     G H + V ++  IEN    K +V TGTL ++ R++A+ 
Sbjct: 563 FWHEPHNVAVVNDLIAQ-----GVHWETVEAKEVIENRFKGKTVVLTGTLTQMGRNEAKA 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +  +GA VS  +S KTD +I GD  GSKL KAQ+LGV ++ EE+FL
Sbjct: 618 LLQDMGAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEEEFL 664


>gi|190150622|ref|YP_001969147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|307263969|ref|ZP_07545570.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|254781246|sp|B3H275|DNLJ_ACTP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189915753|gb|ACE62005.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306870658|gb|EFN02401.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 682

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 268/709 (37%), Positives = 421/709 (59%), Gaps = 58/709 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   ++ P     ++G
Sbjct: 17  QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH IP LSL+  ++ E+L  F+ R+  +   +D +++ F  EPK+DG  +
Sbjct: 74  AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED+++ IR I  IP  L++ N P  +EVRGEV++ +  F
Sbjct: 133 SILYVDGVLNQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254
            ALN+  +  G K +ANPRNAA+G LR+L+P  ITR     LN +  G+ ++ +      
Sbjct: 193 EALNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPVTH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L   + T+  ++E +   G  S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKL---EHTTLMRLERM---GGKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++          +N+ A     +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668
           F+Q P N+  VE L+     S G H ++V       + ++ K +V TGTL ++ R +A+ 
Sbjct: 575 FWQEPHNVTVVEDLI-----SQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +   G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L
Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIAL 678


>gi|46143448|ref|ZP_00135242.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208768|ref|YP_001053993.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae L20]
 gi|166215385|sp|A3N1V2|DNLJ_ACTP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126097560|gb|ABN74388.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 683

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 268/709 (37%), Positives = 419/709 (59%), Gaps = 58/709 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L Q++  ++  Y+    P++ D+EYD L      +    P+    + P     ++G
Sbjct: 18  QLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITVDSPT---QRVG 74

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH IP LSL+  ++ E+L  F+ R+  +   +D +++ F  EPK+DG  +
Sbjct: 75  AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 133

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED+++ IR I  IP  L++ N P  +EVRGEV++ +  F
Sbjct: 134 SILYVDGVLSQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 193

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254
             LN+  +  G K +ANPRNAA+G LR+L+P  ITR     LN +  G+ ++ +      
Sbjct: 194 EELNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPATH 252

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y  +++ R TL YDIDG V KV++  LQ+Q
Sbjct: 253 FERLQWLKSIGIPVNNEIRLATGREQLLAFYANIQAKRPTLGYDIDGTVLKVNDIGLQEQ 312

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 313 LGFISRSPRWAIAYKFPSQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 372

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V ++++ R  +A+   FP+ C
Sbjct: 373 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMDRRPENAKKIEFPTAC 421

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 422 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 475

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L     T+  ++E +   G+ S  N  +SI K +N +L RF+
Sbjct: 476 MERE----LVHTPADLFKL---DHTTLMRLERM---GEKSAQNALNSIEKAKNTTLARFL 525

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++          +N+ A     +  L  V  VG+++A  IV 
Sbjct: 526 FALGIRDVGEATAQNLANHF----------HNLAAIRTATFEQLQAVQDVGEVVANRIVR 575

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668
           F+Q P N+  VE L+     S G H ++V       + ++ K +V TGTL ++ R +A+ 
Sbjct: 576 FWQEPHNVAVVEDLI-----SQGVHWQDVIQVEIADNPLKGKNVVLTGTLTQLTRDQAKA 630

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +   G  VS  +S KTD +I G+  GSKL KAQ+LGVKI+ E++F+ L
Sbjct: 631 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILTEQEFIAL 679


>gi|171463268|ref|YP_001797381.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|254781389|sp|B1XTU0|DNLJ_POLNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171192806|gb|ACB43767.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 671

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 272/701 (38%), Positives = 402/701 (57%), Gaps = 50/701 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L+ E++  +  YY    P++ D EYD L R    I    P+   SE  +    ++GG   
Sbjct: 16  LQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAVHPEWVTSESLS---QRVGGAAL 72

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                VTH++P LSL   +   +L  F  R       +    + +  E K DG  I++RY
Sbjct: 73  KEFDSVTHAVPMLSLNNAFEDAELIAFDRRCREVLHAE---HMAYAGELKFDGLAISLRY 129

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALN 202
           E G  V AA RGDG SGEDV+A I+ I  IP  L+  NIP+++EVRGEV++   DF  +N
Sbjct: 130 ENGLLVTAATRGDGASGEDVTANIKTIRAIPLKLTRKNIPQVLEVRGEVFMYLKDFEKMN 189

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKGQYEML 258
            +   +G K +ANPRNAA+G LR+L+ + IT  R L+FF +GLG  +      K   E+L
Sbjct: 190 RQAAELGEKEFANPRNAAAGSLRQLD-SKITAKRPLSFFAYGLGALEPQSWLPKTHEELL 248

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
                LG PV +  +  ++   I+++Y+E+   R +LPYDIDG+VYKV+ F+ Q +LG  
Sbjct: 249 NAYIELGLPVCSERKVLHSVQEILAFYSEIDDKRDSLPYDIDGVVYKVNSFAEQAKLGFA 308

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           +R+PR+ ++HK+  ++A T +L ID+Q+GRTG +TPVARL PV +GG  +TNATLHNED 
Sbjct: 309 SRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTVTNATLHNEDE 368

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           IK            +D+R+GD V V+RAG+VIP+VV +I + R  DA+ F  PS CP+C 
Sbjct: 369 IK-----------RKDVRIGDTVSVRRAGDVIPEVVSVIKDRRPADAKEFQMPSRCPVCD 417

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S + R  +       A  RC+GGL C AQ+ + L HF  R A +IEGLG++ +D      
Sbjct: 418 SHIERLADE------AVARCSGGLFCGAQRKQALIHFAHRRAMDIEGLGEKIVDQLVDQN 471

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                +R PAD++ L        T + N+   G+ S  NL  +IN+ RN +L RFIF+LG
Sbjct: 472 ----LVRTPADLYRL------GFTALANLERMGEKSADNLIKAINQSRNTTLARFIFALG 521

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG   A+ LA +Y       Q ++ ++    +D L+   V  VG ++A +I  F Q 
Sbjct: 522 IRHVGETTAKDLANHY-------QSMHALMDAGVEDLLT---VKDVGPVVADSITSFMQE 571

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
             N   +E LL      +   EK +S+ +  K  V TGT   + R +A++ + + GA V+
Sbjct: 572 AHNREVIEQLLAS-GMRLAVEEKVISAAVAGKTFVLTGTFPTMTRDEAKDLLEKAGAKVA 630

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +S+KTD ++ G + GSKL KA++LGV +++E   L LL+
Sbjct: 631 GSVSKKTDYVVAGTDAGSKLTKAEELGVPVIDEAAMLDLLK 671


>gi|261493319|ref|ZP_05989845.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261310963|gb|EEY12140.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 685

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 272/712 (38%), Positives = 416/712 (58%), Gaps = 56/712 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++ ++ Q +  ++  Y+    P + D+EYD L      +    P+L  ++ P     ++
Sbjct: 20  EKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPT---QRV 76

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ EDL  F+ R+  +      + + F  EPK+DG  
Sbjct: 77  GAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYI-TASPSQLEFCCEPKLDGLA 135

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           ++I YE G    AA RGDG +GE+++A IR I  IP  L + N P  +EVRGEV++ ++ 
Sbjct: 136 VSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSG 195

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKG 253
           F  LN++ +A G K ++NPRNAA+G LR+L+P  ITR     LN +  G+ ++ +     
Sbjct: 196 FNELNEKALAKGEKTFSNPRNAAAGSLRQLDP-KITRQRPLVLNAYGIGVYESDDELPAT 254

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E LQ ++ LG PVNN +R       +++YY E+++ R TL YDIDG V KV++ +LQ+
Sbjct: 255 HFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQE 314

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +RS RW I++KF  ++  T L ++D Q+GRTG +TPVA+LEPV + G  ++NATL
Sbjct: 315 QLGFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATL 374

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            I +GD V+++RAG+VIP++  +++  R  +A+   FP+ 
Sbjct: 375 HNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFPTA 423

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CPIC S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ 
Sbjct: 424 CPICHSAVTR----VEGEAVA--RCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQ 477

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     I  PAD+F L     T+  ++E +   G+ S  N  +SI K +N +L RF
Sbjct: 478 LMARE----LIETPADLFKL---DHTTLMRLERM---GEKSAQNALNSIEKAKNTTLPRF 527

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +FSLGIR VG   A +LA ++ S +   Q            +  L  V  VG+++A  IV
Sbjct: 528 LFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANRIV 577

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-----ENKKLVFTGTLQKIQRHKAQE 668
            F+Q P N+  VE L+ +      R E  V +EI     ++K +V TGTL ++ R +A+ 
Sbjct: 578 SFWQEPHNVEVVEDLIAQGV----RWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKA 633

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  VS  +S KTD +I G+  GSKL KAQ+LG++I++E+QF+ L Q 
Sbjct: 634 LLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIELTQH 685


>gi|219850499|ref|YP_002464932.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485]
 gi|254781282|sp|B8GAC1|DNLJ_CHLAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219544758|gb|ACL26496.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485]
          Length = 681

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 269/722 (37%), Positives = 395/722 (54%), Gaps = 58/722 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + + Q   EL +L +   YH   YY    PI+ D+EYDAL     A+  A P+L     P
Sbjct: 4   IDVTQRINELRTLIRRYDYH---YYVLDDPIVSDAEYDALMNELRALEAAHPELI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G       KV H  P LSL   +   DL  +  R+ R   +  D ++ + +E
Sbjct: 58  DSPTQRVSGTPASQFAKVQHPQPMLSLGNAFTTTDLLAWRDRVLRLLGQ--DTAVAYVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----------RVLSLN 180
           PKIDG  + + Y  G+FV  A RGDG  GEDV+A +R I +IP           R +   
Sbjct: 116 PKIDGLAVALTYHDGQFVQGATRGDGEVGEDVTANLRTISSIPLLLHPPDGGHDRDVPTA 175

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +IEVRGEVY+   DF ALND + A G K +ANPRNAA+G LR+ +P     R L FF
Sbjct: 176 LPSLIEVRGEVYMRTADFEALNDRLAAAGEKIFANPRNAAAGSLRQKDPAITAARPLRFF 235

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +G+G    +   GQ++ L+ +R LGFPVN  VR+   F  +++Y  +  + R  L Y+ 
Sbjct: 236 AYGVGPVEGVELTGQWQTLRYLRMLGFPVNQDVRRFTDFDEVLAYCEQWMARRDELTYEA 295

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V K+D+F+ Q++LG   R PRW I+ KF  ++A TRLL+I + +GRTG++TP A LE
Sbjct: 296 DGMVIKIDDFAQQRELGVVGRDPRWAIAFKFPPREAITRLLNITVNVGRTGVVTPNAELE 355

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV IGG ++ NA+LHN DYI             RDIR+GD V+VKRAG+VIP VV  +V 
Sbjct: 356 PVQIGGVIVRNASLHNADYI-----------AQRDIRIGDYVIVKRAGDVIPYVVGPVVA 404

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    +P+ FP+ CP C S + R+         AA RC     C AQ + RL+HF SR 
Sbjct: 405 RRDGSERPWQFPTHCPACGSPLEREPGE------AAWRCNNFGICPAQLVRRLEHFASRA 458

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I GLG++Q + F +       +R  AD+F L+            + GFG   + NL 
Sbjct: 459 ALDIVGLGERQAELFVQRG----LVRDVADLFYLK------AEDFAGLEGFGPKRIANLL 508

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           ++I+  R   L+R I  LGIR+VG+  A++L             + ++ A  N     L 
Sbjct: 509 NAIDAARQRPLDRLIVGLGIRYVGSVAAQALVN----------SLGSLDAIMNARQEELE 558

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           ++P +G ++A +IV+F+ +P N   +E L    V  + G   +  S  +  +  V TGTL
Sbjct: 559 QIPGIGPVVAASIVDFFAHPENRQLIEKLRAAGVQMNAGPQRERKSDVLAGQTFVLTGTL 618

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A   +   G  V+  +S+KT+ ++ G N GSKL KAQQLG+ +++E   L L+
Sbjct: 619 PSLTREQASALIIAHGGKVTDSVSKKTNYVVAGVNAGSKLAKAQQLGIPVLDEAALLALI 678

Query: 719 QQ 720
            +
Sbjct: 679 GE 680


>gi|58617448|ref|YP_196647.1| DNA ligase [Ehrlichia ruminantium str. Gardel]
 gi|75356732|sp|Q5FG20|DNLJ_EHRRG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|58417060|emb|CAI28173.1| DNA ligase [Ehrlichia ruminantium str. Gardel]
          Length = 674

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 268/706 (37%), Positives = 409/706 (57%), Gaps = 41/706 (5%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A+  L  L ++I YHD  YY    P I D+EYD L  +   I   FP L         
Sbjct: 5   EEAKLILDKLNEKIRYHDLLYYTQDSPEISDAEYDDLCHQRSIILEKFPSLNSYYQ---- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            + IGG+ +    KV H+   LSL+  +N +D+ KF+ R  +    K++ S+ F+ E KI
Sbjct: 61  -DYIGGDPDSRFSKVKHNERMLSLDNAFNKQDVEKFMVRTRKLLDMKENESLCFSCELKI 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG   +I Y+ GK   A+ RG+G+ GE+++  ++ I  +P  +  N P+ +EVRGEVYI 
Sbjct: 120 DGLSFSIIYKNGKLFQASTRGNGYFGENITNNVKTIENLPHTIQ-NAPDFLEVRGEVYID 178

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           +NDF+ LN+E      K +ANPRNAA+G +R+L+PT    R L + ++ +  ++ +    
Sbjct: 179 RNDFIQLNNE-----GKNFANPRNAAAGSIRQLDPTITAQRKLKYCMYTIVNSNCL---T 230

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q E L  +   GF  N      + F   +++YN+M + RS + YDIDG++YK++   LQ 
Sbjct: 231 QTESLNLLNSWGFCTNEHTISTDNFEEAINFYNKMYNNRSNISYDIDGIIYKINNIKLQH 290

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  ++SPRW I++KF   +  T+L  I IQ+GRTG+LTP+A L P+NIGG +IT A+L
Sbjct: 291 ILGTTSKSPRWAIAYKFPAIEGKTKLNKISIQVGRTGVLTPIAELAPINIGGVVITRASL 350

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+  I+            +DIR GD V+VKRAG+VIP+VVD+  + R  +   F+FP+ 
Sbjct: 351 HNKSEIE-----------RKDIREGDYVIVKRAGDVIPQVVDVDKSLRTVELAEFNFPTA 399

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S V +       +   +  C GGL C  Q LE+++HFVS+DAFNI GLGK+QL F
Sbjct: 400 CPACGSTVYQ------AQQEVSIYCMGGLFCHNQILEKIRHFVSKDAFNIIGLGKKQLLF 453

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I    DIFTL+ +      ++ +  G+G+ S+ NL  +IN  + I+LE F
Sbjct: 454 FYEYG----LITNIIDIFTLEEKINNKNIQLSSFNGWGEKSINNLLSAINNSKVINLENF 509

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IFSLGIR VG  IA+ LA +++SY+N+  E+  +      D    I +  VG     ++ 
Sbjct: 510 IFSLGIRFVGKHIAKILANHFISYKNWYTEMLKLA----QDVNYTINIQQVGLKTINSLR 565

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F+    N+  +  L++ ++  I     +  S I  K +VFTG L  + R +A+      
Sbjct: 566 TFFTEQHNLNMINNLVEHLTI-IDAQSNSYVSLIHGKTIVFTGELSSMSRSEAKLKSETA 624

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           GA VS+ LS+ TD +I+G+NPGSK +KAQ L ++I++E+ +L  +Q
Sbjct: 625 GAKVSSSLSKNTDFLIIGNNPGSKYKKAQSLNIQILSEDIWLQYIQ 670


>gi|165976722|ref|YP_001652315.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190359223|sp|B0BQN6|DNLJ_ACTPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|165876823|gb|ABY69871.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 682

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 266/709 (37%), Positives = 420/709 (59%), Gaps = 58/709 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   ++ P     ++G
Sbjct: 17  QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH IP LSL+  ++ E+L  F+ R+  +   +D +++ F  EPK+DG  +
Sbjct: 74  AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED+++ IR +  IP  L++ N P  +EVRGEV++ +  F
Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254
             LN+  +  G K +ANPRNAA+G LR+L+P  ITR     LN +  G+ ++ +      
Sbjct: 193 ETLNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPATH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L   + T+  ++E +   G  S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKL---EHTTLMRLERM---GGKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++          +N+ A     +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668
           F+Q P N+  VE L+     S G H ++V       + ++ K +V TGTL ++ R +A+ 
Sbjct: 575 FWQEPHNVTVVEDLI-----SQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +   G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L
Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIAL 678


>gi|310823543|ref|YP_003955901.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
 gi|309396615|gb|ADO74074.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 673

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/718 (36%), Positives = 411/718 (57%), Gaps = 60/718 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + ++ A      L +E+++H+  YY    P + D+EYD L R    +   FP LA    P
Sbjct: 1   MDLKTAETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPALA---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      KV H  P LSL  ++N E+  +F  RI +     D   + +  E
Sbjct: 58  DSPTQRVGGEAAEKFAKVVHRAPMLSLANVFNDEEFTEFDERIRKVVGPAD---VTYVCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEV 187
           PK+DG  IT+RYE G+F+  A RGDG +GEDV+  +R +  +P  L     + +P ++EV
Sbjct: 115 PKLDGLAITLRYENGRFLQGATRGDGTTGEDVTGNLRTVRPLPLELLPEAGMAVPPVLEV 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEV+I K DF  LN++    G   +ANPRNAA+G LR+L+P    +R L+  ++ +  T
Sbjct: 175 RGEVFIRKEDFKKLNEKREEEGEALFANPRNAAAGSLRQLDPKITASRPLSVSLYEIVPT 234

Query: 247 SEIFA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
             + A      + E LQK   LG PVN+  R A    G+ + Y      R  L +++DG+
Sbjct: 235 EGVPAFDTHTAKLEYLQK---LGLPVNHHER-AQGLEGVRAAYQAALKGRHALKFEVDGM 290

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD    +++LG+ ++SPRW +++KF  ++ STR+  I++Q+GRTG LTPVA L+PV 
Sbjct: 291 VVKVDSEDQRRRLGQVSKSPRWAVAYKFPPEEESTRVEAIEVQVGRTGALTPVAHLKPVK 350

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG  ++ ATLHNED ++            +D+R GD V V+RAG+VIP++V ++ N+R 
Sbjct: 351 VGGVTVSRATLHNEDELR-----------RKDVRQGDTVFVRRAGDVIPEIVSVVPNQRP 399

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D++P+ FP  CP+C ++ V+D   + G ++   RCTG  +C AQ +E+++HF SR A +
Sbjct: 400 ADSKPYEFPQHCPVCGAQAVKD---EEGAII---RCTGA-SCPAQLVEKVRHFASRPAMD 452

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+G+G +       S      ++  AD++ L R Q  S  ++      G+ S  NL  +I
Sbjct: 453 IDGVGDKLAAQLVAS----GRVKTFADLYALTREQLLSLERM------GEKSADNLLAAI 502

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + +  +  RF+++LGIRHVG   A++LA+ +                   D  +L RV 
Sbjct: 503 ERSKQTTQRRFLYALGIRHVGEATAKALAEAFPEAPLL----------YTADMEALTRVK 552

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            VG  +AQ +  F+Q P+N  A++ALL   V+P+    + N       K +V TG +  +
Sbjct: 553 DVGPTMAQVLHAFFQEPQNRAAIDALLAAGVTPAP--PQVNTGGPFAGKTVVLTGGMTGM 610

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R +A+E + + G  VS  +SRKTD ++ G++ GSKL+KAQ+LGV++++E+ FL LLQ
Sbjct: 611 SRDQAKEEIERRGGKVSGSVSRKTDFVVAGEDAGSKLKKAQELGVRVLDEQAFLKLLQ 668


>gi|254292786|ref|YP_003058809.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814]
 gi|254041317|gb|ACT58112.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814]
          Length = 792

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/642 (40%), Positives = 381/642 (59%), Gaps = 35/642 (5%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +L+++QAR+    L + I   D  YY++  P + D++YDAL++   A+   FP L   + 
Sbjct: 15  SLTLDQARERWEELAETIRQADSAYYEHDAPHLSDADYDALRQDLLALESEFPQLVAQDS 74

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+     +G + +    K+TH  P LSL+  ++ ED+ +F+ RI R+        +  T 
Sbjct: 75  PS---QSVGVKPSGRFAKITHLQPMLSLDNAFSDEDVSEFLGRIRRYLGMDASVELHVTA 131

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPKIDG   ++ YE G  +  A RGDG  GEDV+A ++ I  IP  L  +  PE IE+RG
Sbjct: 132 EPKIDGLSASLLYENGVLISGATRGDGRVGEDVTANLKTIADIPHTLEGDDWPERIEIRG 191

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247
           EVY+S  DF ALN+   A GRK +ANPRNAA+G LR+L+  ++T  R L FF +  G TS
Sbjct: 192 EVYMSHADFAALNEREAAAGRKTFANPRNAAAGSLRQLD-VEVTKSRPLRFFAYAWGDTS 250

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           + F+  Q   ++     GF +N  ++ A++   ++  YN++ + R++L YDIDG+VYKVD
Sbjct: 251 KEFSVNQMGAVEAFSKWGFSINPLMKCADSASQLIEIYNQIANDRASLGYDIDGVVYKVD 310

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q +LG  +R PRW I+HKF  +QA+T L +I+IQ+GRTG LTPVA+LEPV +GG +
Sbjct: 311 RLDWQARLGFVSRFPRWAIAHKFPAEQATTILREIEIQVGRTGSLTPVAKLEPVTVGGVV 370

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHNED I             +DIRVGD+V+++RAG+VIP++V +I  ER   ++P
Sbjct: 371 VSNATLHNEDEI-----------ARKDIRVGDKVVIQRAGDVIPQIVRVIAEERPSHSKP 419

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP+ CP C S  VR+++ K G+  A  RCTGGL C AQ  ERLKHFVSR A +I+GLG
Sbjct: 420 YEFPTTCPACGSHAVREMDEK-GEEDARRRCTGGLICPAQAKERLKHFVSRKALDIDGLG 478

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            +Q++ FF        +  P  IF L++R  + +   +E   GFG  S  N++ +IN +R
Sbjct: 479 AKQIELFFDKG----VVTAPQHIFQLEQRINELNLPPLEEWEGFGKTSSENIFAAINAKR 534

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII-AHNNDDWLSLIRVPLVG 605
            I   RF+  LGI+HVG   +  LA+ +LS+  F   ++  I A     +L L  +  +G
Sbjct: 535 QIPFARFLIGLGIQHVGQTNSGLLAQNFLSFDAFQTAMHAAIDARPGPAYLKLSSIDRIG 594

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           D   + I+ F +        E  L E  P+    E N+S +I
Sbjct: 595 DTTLENILNFVE--------ENGLPETPPA--SLEPNLSGQI 626



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 107/201 (53%), Gaps = 10/201 (4%)

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
           T +ENIL F  V    L ++       +L   I +L ++ V +    ++A+ Y ++  F 
Sbjct: 596 TTLENILNF--VEENGLPETPPASLEPNLSGQIPALQMKGVNSAACEAMARRYGNWDEFR 653

Query: 582 QEINNIIAHNN----DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
              N ++  N+      + S+  +  +GD+ A+A+++F+  P N   +  LL E+     
Sbjct: 654 ---NELLKANDTKPASAFKSISNIDGMGDVSAEALIDFFMEPHNQDMLTQLLAEIEIEAA 710

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
           +  +     +  K +VFTG+L+ + R +A+     LGA V++ +S+KTD ++ G   GSK
Sbjct: 711 QAIQ-TDGAVAGKTVVFTGSLELMSRDEAKSKAQSLGAKVASSVSKKTDYVVAGPGAGSK 769

Query: 698 LEKAQQLGVKIMNEEQFLFLL 718
           L+KAQ LGV ++ E+ +L ++
Sbjct: 770 LKKAQDLGVTVLTEQAWLDMI 790


>gi|238919178|ref|YP_002932692.1| NAD-dependent DNA ligase LigA [Edwardsiella ictaluri 93-146]
 gi|238868746|gb|ACR68457.1| DNA ligase, NAD-dependent, putative [Edwardsiella ictaluri 93-146]
          Length = 672

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 267/711 (37%), Positives = 405/711 (56%), Gaps = 55/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++L  L   + +H+  YY    P I D+EYD L  +   +    P L   + P+    ++
Sbjct: 4   QQLEQLRDALRHHEYQYYVLDDPQITDAEYDRLMMQLKQLEAVHPALVTVDSPS---QRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +  +V H +P LSL+ +++ E  + F  R++   + K D  + F  EPK+DG  
Sbjct: 61  GGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHE--RLKSDEPLTFCCEPKLDGLA 118

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE+G  V AA RGDG +GED+++ ++ I  IP R+    IP  IEVRGEV++ ++ 
Sbjct: 119 VSLLYEQGVLVRAATRGDGTTGEDITSNVKTIRAIPLRLQGEAIPARIEVRGEVFMPQDG 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIFAKGQY 255
           F A+N+E    G K +ANPRNAA+G LR+L+P     R L F+ +G G+          Y
Sbjct: 179 FEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGTGQLEGGALPDSHY 238

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + LQ+ +  G PV+  VR       +++YY ++   R TL +DIDG+V KVD+ ++Q++L
Sbjct: 239 QCLQRFKSWGLPVSERVRLCCGSAEVLAYYRQIGQARPTLGFDIDGVVIKVDDIAIQERL 298

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW  + KF  ++  TRL  ++ Q+GRTG +TPVARLEPV + G  ++NATLHN
Sbjct: 299 GFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN 358

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           D+R+GD V+V+RAG+VIP+VV ++   R  DA    FP+ CP
Sbjct: 359 ADEIERL-----------DLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDAHEIGFPTHCP 407

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S V R      G+ VA  RC+GGL C+AQ+ E LKHFVSR A ++EG+G + ++   
Sbjct: 408 VCGSEVER----TEGEAVA--RCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQLV 461

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             E     +  PAD++ L      S  K+  +   G  S T L  ++++ R  +L RF+F
Sbjct: 462 DKE----YVATPADLYRL------SAGKLTGLERMGPKSATKLIAALDRSRETTLARFLF 511

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A +LA ++ S Q          A    D  SL RVP VG+++A  IV F
Sbjct: 512 ALGIREVGEATAANLASHFGSLQ----------ALRAADLESLKRVPEVGEVVASHIVHF 561

Query: 616 YQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
                N   ++ L+         E +P+  +    V S    K +V TG+L  + R +A+
Sbjct: 562 LSEEHNRQVIDELISDEVGIRWPEGAPA--QSAPAVDSPFAGKTVVLTGSLSVLSRDEAK 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +T LGA VS  +S+KTD++I GD  GSKL KA  LG+++++E Q L +L
Sbjct: 620 DRLTALGARVSGSVSKKTDLVIAGDAAGSKLAKANILGIEVIDEAQMLRML 670


>gi|57239421|ref|YP_180557.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579393|ref|YP_197605.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden]
 gi|81352823|sp|Q5HAI7|DNLJ_EHRRW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57161500|emb|CAH58426.1| NAD-dependent DNA ligase [Ehrlichia ruminantium str. Welgevonden]
 gi|58418019|emb|CAI27223.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden]
          Length = 674

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 268/706 (37%), Positives = 409/706 (57%), Gaps = 41/706 (5%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A+  L  L ++I YHD  YY    P I D+EYD L  +   I   FP L         
Sbjct: 5   EEAKLILDKLNEKIRYHDLLYYTQDSPEISDAEYDDLCHQRSIILEKFPSLNSYYQ---- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            + IGG+ +    KV H+   LSL+  +N +D+ KF+ R  +    K++ S+ F+ E KI
Sbjct: 61  -DYIGGDPDSRFSKVKHNERMLSLDNAFNKQDVEKFMVRTRKLLDMKENESLCFSCELKI 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG   +I Y+ GK   A+ RG+G+ GE+++  ++ I  +P  +  N P+ +EVRGEVYI 
Sbjct: 120 DGLSFSIIYKNGKLFQASTRGNGYFGENITNNVKTIENLPHTIQ-NAPDFLEVRGEVYID 178

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           +NDF+ LN+E      K +ANPRNAA+G +R+L+PT    R L + ++ +  ++ +    
Sbjct: 179 RNDFIQLNNE-----GKNFANPRNAAAGSIRQLDPTITAQRKLKYCMYTIVNSNCL---T 230

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q E L  +   GF  N      + F   +++YN+M + RS + YDIDG++YK++   LQ 
Sbjct: 231 QTESLNLLNSWGFCTNEHTISTDNFEEAINFYNKMYNNRSNISYDIDGIIYKINNIKLQH 290

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  ++SPRW I++KF   +  T+L  I IQ+GRTG+LTP+A L P+NIGG +IT A+L
Sbjct: 291 ILGTTSKSPRWAIAYKFPAIEGKTKLNKISIQVGRTGVLTPIAELAPINIGGVVITRASL 350

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+  I+            +DIR GD V+VKRAG+VIP+VVD+  + R  +   F+FP+ 
Sbjct: 351 HNKSEIE-----------RKDIREGDYVIVKRAGDVIPQVVDVDKSLRTVELAEFNFPTA 399

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S V +       +   +  C GGL C  Q LE+++HFVS+DAFNI GLGK+QL F
Sbjct: 400 CPACGSTVYQ------AQQEVSIYCMGGLFCHNQILEKIRHFVSKDAFNIIGLGKKQLLF 453

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I    DIFTL+ +      ++ +  G+G+ S+ NL  +IN  + I+LE F
Sbjct: 454 FYEYG----LITNIIDIFTLEEKINNKNIQLSSFNGWGEKSINNLLSAINNSKVINLENF 509

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IFSLGIR VG  IA+ LA +++SY+N+  E+  +    N      I +  VG     ++ 
Sbjct: 510 IFSLGIRFVGKHIAKILANHFISYKNWYTEMLKLAQDVN----YTINIQQVGLKTINSLR 565

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F+    N+  +  L++ ++  I     +  S I  K +VFTG L  + R +A+      
Sbjct: 566 TFFIEQHNLNMINNLVEHLTI-IDAQSNSYVSLIHGKTIVFTGELSSMSRSEAKLKSETA 624

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           GA VS+ LS+ TD +I+G+NPGSK +KAQ L ++I++E+ +L  +Q
Sbjct: 625 GAKVSSSLSKNTDFLIIGNNPGSKYKKAQSLNIQILSEDIWLQYIQ 670


>gi|189425977|ref|YP_001953154.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ]
 gi|254781338|sp|B3E8F8|DNLJ_GEOLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189422236|gb|ACD96634.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ]
          Length = 683

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 262/700 (37%), Positives = 394/700 (56%), Gaps = 46/700 (6%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L + + +H+ CYY+   P I D+EYDAL R    I  A PDL     P+ P  ++GG+
Sbjct: 21  AELRRLLEHHNRCYYELDSPEISDAEYDALFRELQVIEAARPDLL---TPDSPTLRVGGK 77

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
                 +V H +P LSLE     +++R F  RI       D  ++ +  EPK+DG  + +
Sbjct: 78  PLARFSQVRHRMPMLSLENAMQEDEIRGFEQRIRSLLALPDTVALQYQCEPKMDGLAVEL 137

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLA 200
            Y+ G  V A+ RGDG  GE+V+A IR +  +P R+   N+P ++EVRGEVY+    F  
Sbjct: 138 VYQDGLLVQASTRGDGEVGEEVTANIRTVRNVPLRLTGDNLPALLEVRGEVYLPLAAFQQ 197

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQ 259
           LN +    G  P+ANPRNAA+G +R+L+P  + R  L    +G+G   E  A+ Q E++ 
Sbjct: 198 LNQQREEAGEPPFANPRNAAAGSIRQLDPAVVARRPLAMVCYGVG-VMETEARTQTELMS 256

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           ++   G PV++  RQ +   G ++ + +++  R +L Y+IDG+V KVD+  LQ++LGE++
Sbjct: 257 QLAAWGLPVSDQARQVSGIEGAIACFQDLQERRDSLLYEIDGMVIKVDDLRLQQELGEKS 316

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           RSPRW I+ KF  +QA+TR+ +I + +GRTG++TPVA LEPV + G  ++ ATLHN D I
Sbjct: 317 RSPRWAIACKFPPRQATTRINEIILSVGRTGVITPVASLEPVELSGVTVSRATLHNWDEI 376

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           +            +DIRVGDRV+V+RAG+VIP VV +++++R    Q    P  CP+C S
Sbjct: 377 R-----------RKDIRVGDRVIVERAGDVIPAVVKVLLDKRSGTEQELPEPETCPVCGS 425

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           R  R+     G++  A RC GGLAC  Q  E + HF SRDA +I+GLG + ++       
Sbjct: 426 RAARE----AGEV--AVRCQGGLACPPQLAESIIHFASRDAMDIDGLGSKYIEQL----- 474

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
              S+ +  DI  L R  +    + E +   GD    NL  +I   +   L RFIF+LGI
Sbjct: 475 --ISLGLVKDIADLYRLTRDDFMQFERM---GDKLAENLLAAIASSKQQELSRFIFALGI 529

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVG   AR+LA+ + S  N        +    D          VG  +A +I  F+  P
Sbjct: 530 RHVGERTARTLAERFGSIDNLQTATLEELTSIRD----------VGPAVAISIRSFFDAP 579

Query: 620 RNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            N   ++ L    V+P++   EK V   +     VFTGTL  + R +A++ V   G  V+
Sbjct: 580 ANQTVLQRLKAAGVAPTV--EEKRVGGRLAGLTFVFTGTLATLGRDEAKKLVEAEGGNVT 637

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +S+KTD ++ G   GSKLEKA+ LG+ +++E+ F  LL
Sbjct: 638 GSVSKKTDYVVAGSEAGSKLEKARNLGITVLSEDAFSKLL 677


>gi|254360665|ref|ZP_04976814.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
 gi|153091205|gb|EDN73210.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
          Length = 685

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 272/712 (38%), Positives = 415/712 (58%), Gaps = 56/712 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++ ++ Q +  ++  Y+    P + D+EYD L      +    P+L  ++ P     ++
Sbjct: 20  EKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPT---QRV 76

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ EDL  F+ R+  +      + + F  EPK+DG  
Sbjct: 77  GAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYI-TASPSQLEFCCEPKLDGLA 135

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           ++I YE G    AA RGDG +GE+++A IR I  IP  L + N P  +EVRGEV++ ++ 
Sbjct: 136 VSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSG 195

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKG 253
           F  LN++ +A G K +ANPRNAA+G LR+L+P  ITR     LN +  G+ ++ +     
Sbjct: 196 FNELNEKALAKGEKTFANPRNAAAGSLRQLDP-KITRQRPLVLNAYGIGVYESDDELPAT 254

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E LQ ++ LG PVNN +R       +++YY E+++ R TL YDIDG V KV++ +LQ+
Sbjct: 255 HFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQE 314

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +RS RW I++KF  ++  T L ++  Q+GRTG +TPVA+LEPV + G  ++NATL
Sbjct: 315 QLGFISRSSRWAIAYKFPAQEEMTILKEVGFQVGRTGAITPVAKLEPVFVAGVTVSNATL 374

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            I +GD V+++RAG+VIP++  +++  R  +A+   FP+ 
Sbjct: 375 HNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVMLERRPENAKKIEFPTA 423

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CPIC S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ 
Sbjct: 424 CPICHSAVTR----VEGEAVA--RCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQ 477

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     I  PAD+F L     T+  ++E +   G+ S  N  +SI K +N +L RF
Sbjct: 478 LMARE----LIETPADLFKL---DHTTLMRLERM---GEKSAQNALNSIEKAKNTTLPRF 527

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +FSLGIR VG   A +LA ++ S +   Q            +  L  V  VG+++A  IV
Sbjct: 528 LFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANRIV 577

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-----ENKKLVFTGTLQKIQRHKAQE 668
            F+Q P N+  VE L+ +      R E  V +EI     ++K +V TGTL ++ R +A+ 
Sbjct: 578 SFWQEPHNVEVVEDLIAQGV----RWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKA 633

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  VS  +S KTD +I G+  GSKL KAQ+LG++I++E+QF+ L Q 
Sbjct: 634 LLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIELTQH 685


>gi|158521726|ref|YP_001529596.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3]
 gi|254781314|sp|A9A0L9|DNLJ_DESOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158510552|gb|ABW67519.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3]
          Length = 682

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 273/721 (37%), Positives = 405/721 (56%), Gaps = 60/721 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L   +A++ ++ L  E+  H+  YY    P I D+EYD L R    +    PDLA   DP
Sbjct: 5   LDKSEAKERVTFLRNELHRHNHLYYIKDAPEISDAEYDRLFRELAELEALHPDLA---DP 61

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G      L  VT +IP LS+   +  E+L KF  R+ R  Q  D   + +  E
Sbjct: 62  ASPTARVGAPPTGDLATVTRTIPMLSISNAFADEELFKFDERVRRSLQTGD--PVTYLAE 119

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVR 188
           PK+DGT + + YEKG+ V AA RGDG +GE ++   R I ++P  L+   + +P ++EVR
Sbjct: 120 PKLDGTAVELVYEKGRLVMAATRGDGVTGEVITPNARTIGSVPLHLTGDAVPMPNLLEVR 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEV ++K  F  LN   +      +AN RNAA+G LR+L+     +R L    +G+G+ S
Sbjct: 180 GEVVMTKEGFEKLNALRLERDEPLFANARNAAAGSLRQLDSRVTASRPLTLIAYGIGRFS 239

Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           EI A   Q+E++ ++   GF  N+ VR      G++ +Y  ++ IR +LPYDIDG+V KV
Sbjct: 240 EIDAISTQHEIVTRLADFGFKTNSHVRWDLDIKGVIDFYRFLEGIRPSLPYDIDGMVVKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q+ LG  +RSPRW+I++KFA  Q +TRL+ ID+Q+GRTG LTPVA LEPV IGG 
Sbjct: 300 DRLDFQRTLGATSRSPRWVIAYKFAASQETTRLVAIDVQVGRTGALTPVALLEPVTIGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATLHNED I             +DIRVGD VLV+RAG+VIP+VV +I   R  +  
Sbjct: 360 TVSRATLHNEDEI-----------ARKDIRVGDAVLVQRAGDVIPEVVQVITGRRTGNET 408

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF  P+ CP+C + VVR+ +       A  RC    AC AQ  ER+KHF ++ AF+I+GL
Sbjct: 409 PFQMPATCPVCGTPVVREPSE------AVTRCVNA-ACPAQVKERIKHFAAKGAFDIDGL 461

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D           I   AD+FTL+         +E++   G  S  NL  +I K R
Sbjct: 462 GDKLVDQLVDRG----MIASYADLFTLR------VEDLESLDRMGFKSAQNLVAAIEKSR 511

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYY-----LSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +I+ + F++ LG+RHVGA +A  LA+ +     L+    A ++N+I              
Sbjct: 512 HITFDAFLYGLGMRHVGAHVATLLARAFPGIDQLAEAALAGQLNSIDG------------ 559

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSE--IENKKLVFTGTL 658
             +G +IA+++  F+ NP N   V++L+   V+      E     E  +  K  V TGTL
Sbjct: 560 --IGGVIAESVKNFFSNPENRQTVDSLINHGVALQFPEKEAATGHEMPLAGKTFVLTGTL 617

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R +A++ +   G  V+  +S +TD ++ G+ PGSK +KA+ LGV I++E   L LL
Sbjct: 618 EKMTRDQARQRIEAAGGKVTGSVSSRTDYVVAGEAPGSKRDKAEALGVAILDEAGLLSLL 677

Query: 719 Q 719
           +
Sbjct: 678 E 678


>gi|85059656|ref|YP_455358.1| NAD-dependent DNA ligase LigA [Sodalis glossinidius str.
           'morsitans']
 gi|123766419|sp|Q2NSC2|DNLJ_SODGM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84780176|dbj|BAE74953.1| DNA ligase [Sodalis glossinidius str. 'morsitans']
          Length = 678

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 262/719 (36%), Positives = 423/719 (58%), Gaps = 57/719 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ  + +  L +++ + +  YY  + P + DSEYD        +    PDL  ++ P+ 
Sbjct: 1   MEQIEQHILRLRKQLRHWEYLYYVEAAPEVPDSEYDRFMAELRTLEAERPDLLTADSPS- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GG+   S  +V H +P LSL+ ++       F  R+    ++ DD  + +  E K
Sbjct: 60  --QRVGGQAQSSFGQVRHEVPMLSLDNVFEEPGFLAFDKRVRDRLKRDDD--MTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEV 191
           +DG  +++ YE G+ V AA RGDG +GED++A +R I TIP  L    N+P ++E+RGEV
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGATGEDITANVRTIRTIPLRLQDHDNLPRLLEIRGEV 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE-I 249
           ++S+  FL LN+     G K +ANPRNAA+G LR+L+P+   R  L F+ +G+G   +  
Sbjct: 176 FMSEAGFLRLNETAKREGSKVFANPRNAAAGSLRQLDPSITARRPLTFYCYGVGLLEDGE 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +  +E LQ+ +  G PV++ VR+      ++ +Y ++   R +L +DIDG+V KVD  
Sbjct: 236 LPESHWERLQQFKAWGVPVSDRVRRCTGSAAVLDFYRQVHEARLSLGFDIDGVVIKVDSL 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  AR+PRW I++KF  ++  TR+ D++ Q+GRTG +TPVARLEPV + GA+++
Sbjct: 296 ALQQRLGFVARAPRWAIAYKFPAQEQLTRVRDVEFQVGRTGAITPVARLEPVLVSGAMVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D ++ L            + +GD V+V+RAG+VIP++V ++ +ER  + +P +
Sbjct: 356 NATLHNADEVERL-----------GLMIGDTVIVRRAGDVIPQIVGVVTSERPAEVRPVA 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+  A  RCT GL C+AQ+ E LKHFVSR A +I+G+G +
Sbjct: 405 FPTQCPVCSSDVER----VEGE--AVLRCTAGLVCAAQRKEALKHFVSRRAMDIDGMGDK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     ++ PAD+F L +   T   ++      G  S  NL +++ K R  +
Sbjct: 459 IIDQLVERE----LVKTPADLFRLNKEILTRLDRM------GSKSAQNLLEALEKARQTT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA  Y +       ++ +IA + D   SL  V  +G+I+A
Sbjct: 509 FARFLYALGIREVGEATAVNLAAAYGT-------LDALIAADID---SLTGVQDIGNIVA 558

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEI-------ENKKLVFTGTLQKI 661
             +  F++   NI  ++ LL   SP+IG R  + V++ +         K +V TG+L  +
Sbjct: 559 THVRHFFEETHNIEVIQDLL---SPAIGIRWPEPVAAPVAASDNPFAGKTIVLTGSLSSL 615

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R +A++++  LGA VS  +S KTD++I G+  GSKL KAQQL + +M+E + + LL +
Sbjct: 616 SRDEAKDHLVALGARVSGSVSAKTDLLIAGEAAGSKLSKAQQLNIPVMDEAEMMRLLGE 674


>gi|156933031|ref|YP_001436947.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ATCC BAA-894]
 gi|166215403|sp|A7MKW4|DNLJ_ENTS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156531285|gb|ABU76111.1| hypothetical protein ESA_00834 [Cronobacter sakazakii ATCC BAA-894]
          Length = 672

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 261/716 (36%), Positives = 417/716 (58%), Gaps = 53/716 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R   A+  A P+L     P+ 
Sbjct: 1   MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H +P LSL+ +++      F  R+    + K  +++ +  E K
Sbjct: 58  PTQRVGAAPLTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVQD--RLKSTDALVYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GED++  +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLRGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +   E LQ+ +  G PV++ +R   T   ++++Y+++++ R TL +DIDG+V KVD  
Sbjct: 236 -PRSHMERLQQFKAWGLPVSDRIRLVKTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++
Sbjct: 295 ELQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  
Sbjct: 355 NATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ V   RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPAQCPVCGSDVER----VEGEAVT--RCTGGLICGAQRKEALKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  NL +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNLVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA ++ + +     IN  I    DD   L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEAL---INASI----DD---LQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
             +  F++   N   +  L +EV     +P + + E+ + S    K +V TGTL ++ R 
Sbjct: 558 THVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEE-IDSPFAGKTVVLTGTLSQMSRD 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            A+  +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL +
Sbjct: 617 DAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 672


>gi|82523924|emb|CAI78646.1| NAD-dependent DNA ligase [uncultured delta proteobacterium]
          Length = 670

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 271/709 (38%), Positives = 406/709 (57%), Gaps = 54/709 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A K +  L Q I YH+  YYQ   P I D+EYD L R    +   FPD    E  + P  
Sbjct: 7   AHKRIIELRQIIEYHNKRYYQQDAPEISDAEYDLLMRELHNLEAQFPD---DELASSPTQ 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G          TH  P LSL   ++ E++  F  R+ R       ++I +  EPK+DG
Sbjct: 64  RVGAAPLAKFVSFTHPSPMLSLANAFSEEEIIDFDNRLKRLASV---DNISYVAEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVY 192
             + I YE G F+  A RGDG +GEDV+  ++ I T+P  +  +    IP  +EVRGEVY
Sbjct: 121 LAVNIIYENGFFIKGATRGDGTTGEDVTQNLKTINTLPLKIKKSGETLIPSFMEVRGEVY 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K  F  LN   +  G +P+ANPRNAA+G LR+L+ + IT  R L+ F++G+G    + 
Sbjct: 181 MEKEPFEKLNQRRVKDGEEPFANPRNAAAGSLRQLD-SKITARRPLSIFLYGIGNIQGMN 239

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E+LQ +   GFPVN  + QA   +  + Y+N + + R TLPYDIDG+V KVD  +
Sbjct: 240 FPTHWELLQALSVWGFPVNKLIEQAKDINACIRYFNRIGNARDTLPYDIDGVVLKVDGLA 299

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  +R+PRW ++ KF  +Q +T + DI IQ+GR G LTPVA +EPVN+GG +++ 
Sbjct: 300 LQNTLGNISRNPRWALACKFPAQQETTIIKDIIIQVGRMGTLTPVAIMEPVNVGGVMVSR 359

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED I             +D+R+GD V+++RAG+VIP+VV +I   R    + F  
Sbjct: 360 ATLHNEDEI-----------SKKDVRIGDAVIIQRAGDVIPEVVKVIDKNRTDRGKKFKM 408

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP C S VVR      G++  A RC   ++C AQ  E ++HF SR A +IEGLG++ 
Sbjct: 409 PSHCPECGSEVVR----FEGEV--AQRCV-NISCPAQLKEHIRHFASRGALDIEGLGEKL 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
               F ++     I  PAD++ L +       K+  +    + S   L DSI + +N  L
Sbjct: 462 SAQLFDAK----LIADPADLYFLTK------DKLLELDRQAEKSAQKLIDSIARSKNPPL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++FI++LGIRHVG   A+ LA Y+ S       I N+IA  ++D   L  +  +G  I+ 
Sbjct: 512 DKFIYALGIRHVGERTAKLLAGYFGS-------IENLIAAKSED---LTVINEIGPEISA 561

Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +IVEF+  P+N   ++   K  V P   + E + ++ +  K  VFTGT++++ R+KA++ 
Sbjct: 562 SIVEFFHEPKNKAVMKKFEKAGVIPQ--KKEISHNAPLAGKAFVFTGTMERMGRNKAKDI 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V  +G  V + +++KT  ++ G  PGSKL+KA   G+KI++E++FL L+
Sbjct: 620 VENMGGTVQSGVTKKTTYVVAGAEPGSKLDKANSSGIKIISEDEFLKLI 668


>gi|237807406|ref|YP_002891846.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187]
 gi|237499667|gb|ACQ92260.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187]
          Length = 686

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 261/717 (36%), Positives = 411/717 (57%), Gaps = 53/717 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + + +  + +L+Q +  ++  YY + +P + D+EYD L      +  A P      D N 
Sbjct: 1   MNEIQSRMHALQQLLERYNTEYYLHDEPSVPDAEYDRLMNELRELEAANPQWL---DVNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    S   V H  P LSL+ ++N EDL  F  R+       D  +I F  EPK
Sbjct: 58  PTQRVGGVALTSFGSVQHEQPMLSLDNVFNAEDLAAFGRRVQERLLSND--AITFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE+G+ V AA RGDG +GED++  +R I  IP R+   NIP  IEVRGEV+
Sbjct: 116 LDGLAVSILYEQGELVRAATRGDGVTGEDITRNVRTIRVIPLRLSGDNIPARIEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-- 249
           + K  F   N++ +  G K +ANPRNAA+G LR+L+P     R L F+ + +G   E   
Sbjct: 176 MPKAGFERWNEQALVRGDKVFANPRNAAAGSLRQLDPAITAQRPLAFYAYAIGVVDEATE 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                Y  +Q ++  G PV + +RQ     G   Y++++ + R  LP++IDG+V+KVD  
Sbjct: 236 LPDSHYARMQYLKQFGLPVCDEIRQVVGVEGCQIYHDDILAKRDALPFEIDGVVFKVDTI 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ LG  +R+PRW ++HKF  ++  TRL D++ Q+GRTG +TPVARLEPV +GG  ++
Sbjct: 296 AQQQMLGFVSRAPRWAVAHKFPAQEELTRLNDVEFQVGRTGAITPVARLEPVQVGGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            +++GD V+V+RAG+VIP++V+++++ R    +   
Sbjct: 356 NATLHNADEITRL-----------GVKIGDWVVVRRAGDVIPQIVNVVLDRRDASCRDID 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S+V R      G+ VA  RC+GGL C+AQ+ E LKHFVSR A +I+G+G +
Sbjct: 405 FPERCPVCDSQVER----LPGEAVA--RCSGGLYCAAQRKEALKHFVSRRAMDIDGIGDK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     +  PAD+F L + Q     ++      G+ S   L +++   R  +
Sbjct: 459 LIEQLVDHE----LVHTPADLFALTKAQLLGLERM------GEKSADKLLNALQSARETT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+F+LGIR +G   A++LA+++          +++ A  +    +L++V  VG+++A
Sbjct: 509 FARFLFALGIREIGETTAQTLAQHF----------SDLPALQDASVETLLKVSDVGEVMA 558

Query: 610 QAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSS------EIENKKLVFTGTLQKIQ 662
           + I  F++   N+  ++ LL  +S    G   + V+        +  K LV TGTL ++ 
Sbjct: 559 KHIYYFFRQEHNLEVIQRLLAPISEGGAGISWQPVARVAVDALPLNGKTLVLTGTLSQLN 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R  A++ +  LGA V+  +S KTD++I G+  GSKLEKAQQLGV +  E++ + LLQ
Sbjct: 619 RDAAKQALQALGAKVAGSVSAKTDLVIAGEAAGSKLEKAQQLGVPVWGEDELVALLQ 675


>gi|152979719|ref|YP_001345348.1| NAD-dependent DNA ligase LigA [Actinobacillus succinogenes 130Z]
 gi|190359224|sp|A6VR16|DNLJ_ACTSZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150841442|gb|ABR75413.1| DNA ligase, NAD-dependent [Actinobacillus succinogenes 130Z]
          Length = 672

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 265/710 (37%), Positives = 413/710 (58%), Gaps = 47/710 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +++ L   + +H+  Y+    P I DSEYD L  R  A+    P+L  ++ P     +
Sbjct: 5   QNQINQLRNTLRHHEYQYHVLDNPEIPDSEYDRLFHRLKALEQQHPELISADSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G +      ++TH +P LSL+ +++ E+   F+ RI        DN + F  EPK+DG 
Sbjct: 62  VGAKPLAGFAQITHELPMLSLDNVFSDEEFYAFVKRIQERLITLPDN-LEFCCEPKLDGL 120

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            ++I YE G+ V AA RGDG +GED++  IR I  IP ++L+ N P  +EVRGEV++ + 
Sbjct: 121 AVSILYENGRLVQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPVRLEVRGEVFMPQE 180

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSEIFAKG 253
            F  LN+  +A G K +ANPRNAA+G LR+L+P   ++     N +  G+ + +++    
Sbjct: 181 GFDRLNEAALARGEKTFANPRNAAAGSLRQLDPKITSQRPLVWNAYSIGIAEGADL-PPT 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ ++ +G PVN  +R       ++ +Y  ++  R  L YDIDG V KV+E +LQ+
Sbjct: 240 HYERLQWLKSIGIPVNGEIRLCRGAENVLKFYRTIQEKRPELGYDIDGTVLKVNEIALQE 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L+PV + G  ++NATL
Sbjct: 300 RLGFISKAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNATL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L           DI +GD V+V+RAG+VIP+++ ++ + R P+A+P  FP+ 
Sbjct: 360 HNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVVHDRRPPNAEPIIFPTL 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S +VR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G + ++ 
Sbjct: 409 CPVCHSAIVR----IEGEAVA--RCTGGLFCDAQRKESLKHFVSRRAMDIDGVGAKLIEQ 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     IR PAD+F L      +  ++E +   G+ S     DS+ K +  +L RF
Sbjct: 463 LVDRE----LIRTPADLFKLDL---ITLMRLERM---GEKSAQKALDSLEKAKKTTLARF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG   A +LA ++           N+ A    D   L  V  VG+++A  I 
Sbjct: 513 IFALGIREVGEATALNLANFF----------KNLTALQTADLEQLQAVSDVGEVVANRIY 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F++   NI  V  L+ +        EK V+ +  + K +V TGTL ++ R++A+  + Q
Sbjct: 563 VFWREQHNIDVVNDLIAQGVHWDDVEEKQVNENPFKEKTVVLTGTLSQMGRNEAKALLQQ 622

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +GA V+  +S KT I+I GD+ GSKL KAQ LGV +M+E +FL ++  ++
Sbjct: 623 MGAKVAGSVSAKTHIVIAGDSAGSKLSKAQDLGVAVMSEAEFLEIVNSFS 672


>gi|88810628|ref|ZP_01125885.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
 gi|88792258|gb|EAR23368.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
          Length = 672

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/715 (35%), Positives = 409/715 (57%), Gaps = 48/715 (6%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           ++ +E  ++E   + +++L  +I  H+  Y+    P + D++YD L R   A+    PDL
Sbjct: 1   MVRVERAAVE---RRVAALRDQIEQHNYRYFVLDDPQVSDADYDVLMRELQALEADHPDL 57

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                P+ P  ++G +   +  +  H +P LSL+  ++  +L +F  RI    ++   N 
Sbjct: 58  V---SPDSPTQRVGAKPVEAFGEARHGVPMLSLDNAFDAGELGEFDRRIR---ERLGINR 111

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184
           I +  EPK+DG  + +RYE+G+ V    RGDG  GED++A IR + TIP R+     PE+
Sbjct: 112 IAYMAEPKLDGLSVNLRYEQGRLVQGGTRGDGQVGEDITANIRTLRTIPLRLRGKGWPEL 171

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           IEVRGE+ I K DF  LN   +  G + +ANPRNAA+G LR+L+P     R L FF  G+
Sbjct: 172 IEVRGEIVIRKADFKHLNTLRLEAGERLFANPRNAAAGSLRQLDPRVTARRPLTFFAFGI 231

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G++ E+ A  Q ++L+++   GFPV   V+  +     ++YY  + + R TLP++IDG V
Sbjct: 232 GESREVIAGRQSQILERLHGWGFPVYERVQVVSGVEECLAYYRRLMAQRETLPFEIDGTV 291

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+ S Q++LG  AR+PRW +++K   ++  + +LDI+  +GRTG++TPVARLEPV +
Sbjct: 292 YKVDDLSSQQRLGFTARAPRWAVAYKLPAREGLSVVLDIEPSVGRTGVITPVARLEPVPL 351

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++ +ATLHNED ++            +D+R+GD V+++RAG+VIP+++ +   +R  
Sbjct: 352 GGVIVRHATLHNEDEVR-----------RKDVRIGDTVMLRRAGDVIPEIIGVQPEKRPQ 400

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            AQP+  P  CP+C + V+R  +       AAHRC GGL C+AQ+   + HF SR A +I
Sbjct: 401 GAQPWRMPLKCPVCSAEVMRLEHQ------AAHRCLGGLYCAAQRTGAILHFASRRAMDI 454

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG++ ++           +   AD+++L+R Q     ++      G+ S  NL  +I+
Sbjct: 455 DGLGEKLVEQLVGR----GLVATVADLYSLERAQLVELERM------GERSAGNLLRAID 504

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R  +L RF+++LGI  VG   A+ LA++Y       +              +L R+P 
Sbjct: 505 ASRATTLARFLYALGIPEVGEVTAKRLAEHYGDLDPLERATEE----------ALTRLPD 554

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G ++AQ I  F+  P N   ++AL +           N S+ +  +  V TGTL+   R
Sbjct: 555 IGPVLAQRITHFFAQPHNREVIDALRRSGLHWSVPDGANQSTPLAGRVFVLTGTLKGYTR 614

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +AQE +  LG  V+  +S+ TD +IVG+ PGSK +KA QLG+ +++E  F  L+
Sbjct: 615 EEAQERIEALGGRVTGHVSKNTDYMIVGEAPGSKRDKAVQLGITLLDESGFRQLI 669


>gi|170718864|ref|YP_001784038.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 2336]
 gi|254781341|sp|B0USD9|DNLJ_HAES2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168826993|gb|ACA32364.1| DNA ligase, NAD-dependent [Haemophilus somnus 2336]
          Length = 667

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 270/712 (37%), Positives = 415/712 (58%), Gaps = 59/712 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L Q + +H+  Y+    P I DSEYD L  +  A+   +P+ A     N P  +
Sbjct: 3   KQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYASE---NSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKIDG 136
           +G +   +  +V H IP LSL+  ++ ED   F+ RI  R       +S+ F  EPK+DG
Sbjct: 60  VGAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRLIHVH--HSLTFCCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             ++I Y  G+ V AA RGDG +GED++A IR I  IP ++L+ N P  +EVRGEV++S+
Sbjct: 118 LAVSILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPTRLEVRGEVFMSQ 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAK 252
             F  LN   +A G K +ANPRNAA+G LR+L+P  IT  R L    +G+G    +    
Sbjct: 178 AGFEKLNKTALAKGEKTFANPRNAAAGSLRQLDP-KITGQRPLMLNAYGIGIAEGVELPD 236

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +  LQ ++ +G PVNN ++  +    ++ +Y  +K  RS+L YDIDG V K+++  LQ
Sbjct: 237 THFARLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQ 296

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +++PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV + G  ++NAT
Sbjct: 297 QQLGFISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNAT 356

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I  L           DI +GD V+V+RAG+VIP+++ ++   R  +A+   FP+
Sbjct: 357 LHNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPT 405

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S + +      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++
Sbjct: 406 NCPVCDSVISK----IEGEAVA--RCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIE 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              + E     +  PAD+F L    Q +  ++E +   G  S  N   S+ K +  +L R
Sbjct: 460 QLVERE----LVHTPADLFKL---DQVTLMRLERM---GAKSAENALASLAKAKKTTLAR 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A +LA ++ + + F           N  +  L +V  VG+++A+ I
Sbjct: 510 FIFALGIREVGETTALNLATHFKTLEAF----------ENATFEQLQKVQDVGEVVAKRI 559

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS------SEIENKKLVFTGTLQKIQRHKA 666
             F+  P N+  V+ L+ +     G H  NV       + ++ K +V TGTL K+ R +A
Sbjct: 560 RSFWSEPHNVAVVKDLIAQ-----GIHWDNVEVKEVRDNPLKGKTVVLTGTLTKMGRSEA 614

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +EY+ QLG  VS  +S KTD +I G++ GSKL KA +LG+ I++E +FL LL
Sbjct: 615 KEYLLQLGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFLALL 666


>gi|223041748|ref|ZP_03611941.1| DNA ligase [Actinobacillus minor 202]
 gi|223017432|gb|EEF15850.1| DNA ligase [Actinobacillus minor 202]
          Length = 680

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/707 (37%), Positives = 414/707 (58%), Gaps = 48/707 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L  ++  ++  Y+    P++ D+EYD L      +    P+L     P+ P  ++G
Sbjct: 15  EIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELIT---PDSPTQRVG 71

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH +P LSL+  ++ EDL  F+ R+  +      +S+ F  EPK+DG  +
Sbjct: 72  AKPLDGFSQVTHELPMLSLDNAFSDEDLDGFLRRMESYISVAP-SSLAFCCEPKLDGLAV 130

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED++A IR I  IP  L  + P + +EVRGEV++ +  F
Sbjct: 131 SILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTDNPPLRLEVRGEVFMPQKGF 190

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSEIFAKGQY 255
            ALN + +  G K +ANPRNAA+G LR+L+P    +    LN +  G+  + +      +
Sbjct: 191 EALNQKALEKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPSTHF 250

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ ++ LG PVNN +R       ++ +Y ++++ R TL YDIDG V KV++ +LQ+QL
Sbjct: 251 ERLQWLKSLGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQL 310

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLHN
Sbjct: 311 GFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 370

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L            I +GD V+++RAG+VIP+++ I+   R  +A+  +FP+ CP
Sbjct: 371 GDEIERL-----------GIAIGDTVIIRRAGDVIPQIIGIVAERRPKNAKKITFPTACP 419

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           IC S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++   
Sbjct: 420 ICGSAVVR----VEGEAVA--RCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLM 473

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + E     +  PAD+F L    Q +  ++E +   G+ S  N  +SI K +N +L RF+F
Sbjct: 474 ERE----LVHTPADLFKL---DQVTLMRLERM---GEKSAQNALNSIEKAKNTTLPRFLF 523

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A +LA ++ S            A     +  L  V  VG+++A  IV F
Sbjct: 524 ALGIRDVGEATALNLANHFGSLD----------AIRAATFEQLQEVQDVGEVVANRIVRF 573

Query: 616 YQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +Q P N+  VE L+++  V  +I + E    + +++K +V TGTL  + R +A+  +  L
Sbjct: 574 WQEPHNVEVVEDLIQQGVVWQNIEQVEI-ADNPLKDKNVVLTGTLSVLTRDQAKALLQGL 632

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK+++E+ FL ++ Q
Sbjct: 633 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFLAIVGQ 679


>gi|240948595|ref|ZP_04752968.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
 gi|240297103|gb|EER47674.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
          Length = 679

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/702 (38%), Positives = 413/702 (58%), Gaps = 48/702 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L  ++  ++  Y+    P++ D+EYD L      +    P+L     P+ P  ++G
Sbjct: 15  EIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELIT---PDSPTQRVG 71

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH +P LSL+  ++ EDL  F+ R+  +      +S+ F  EPK+DG  +
Sbjct: 72  AKPLDGFSQVTHELPMLSLDNAFSDEDLDGFLRRMESYISVTP-SSLDFCCEPKLDGLAV 130

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED++A IR I  IP R+ + N P  +EVRGEV++ +  F
Sbjct: 131 SILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLRLKTDNPPLRLEVRGEVFMPQKGF 190

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSEIFAKGQY 255
            ALN + +  G K +ANPRNAA+G LR+L+P    +    LN +  G+  + +      +
Sbjct: 191 EALNQKALEKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPNTHF 250

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ ++ LG PVNN +R       ++ +Y ++++ R TL YDIDG V KV++ +LQ+QL
Sbjct: 251 ERLQWLKSLGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQL 310

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLHN
Sbjct: 311 GFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 370

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L            I +GD V+++RAG+VIP+++ I+   R  +A+  +FP+ CP
Sbjct: 371 GDEIERL-----------GIAIGDTVIIRRAGDVIPQIIGIVAERRPENAKKITFPTACP 419

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           IC S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++   
Sbjct: 420 ICGSAVVR----VEGEAVA--RCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLM 473

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + E     +  PAD+F L    Q +  ++E +   G+ S  N  +SI K +N +L RF+F
Sbjct: 474 ERE----LVHTPADLFKL---DQVTLMRLERM---GEKSAQNALNSIEKAKNTTLPRFLF 523

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A +LA ++ S +          A     +  L  V  VG+++A  IV F
Sbjct: 524 ALGIRDVGEATALNLANHFGSLE----------AIRTATFEQLQEVQDVGEVVANRIVRF 573

Query: 616 YQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +Q P N+  VE L+++  V  +I + E    + +++K +V TGTL  + R +A+  +  L
Sbjct: 574 WQEPHNVEVVEDLIQQGVVWQNIEQVEI-ADNPLKDKNVVLTGTLSVLTRDQAKALLQGL 632

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK+++E+ FL
Sbjct: 633 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFL 674


>gi|289522353|ref|ZP_06439207.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504189|gb|EFD25353.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 674

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 263/706 (37%), Positives = 398/706 (56%), Gaps = 46/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A+K    L +EI  H+  YY    P+I D EYDAL R    +   FP++     P+ P 
Sbjct: 7   EAKKRAEELRKEIEKHNYYYYVLDSPVITDEEYDALYRGLVELERRFPEII---TPDSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG+      KV H IP LS++ ++  E+L+ F++R+YR  +++ D    FT E K+D
Sbjct: 64  QRVGGKPKEEFRKVVHEIPMLSMDNVFTQEELQSFVSRVYRILEREVD----FTTELKVD 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YE G+FV  A RGDG  GEDV+  +R I ++P  L   +P  +EVRGEVY++K
Sbjct: 120 GIAVSLVYEDGRFVLGATRGDGRVGEDVTENLRTIKSLPLRLMEPLPGRLEVRGEVYMTK 179

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
            DF +LN      G   +ANPRNAA+G LR+L+P     R L  FV+ +    E     Q
Sbjct: 180 EDFASLNRSREEDGEPLFANPRNAAAGSLRQLDPNVTAQRRLRIFVYQVVHPEEYGLFSQ 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +++L  +R  GFP     R    F  + +Y  E K  R +L Y  DG+V KVD+ +  +Q
Sbjct: 240 FQVLSWLRNKGFPTQGNERLCKNFEELWNYIEEWKEKRHSLAYATDGVVVKVDDLTAYEQ 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A++PRW I+ K+  ++  TRLL I++ +GRTG LTPVA LEPV + G ++  A+LH
Sbjct: 300 LGTTAKAPRWQIAFKYPAEEQRTRLLRIEVSVGRTGALTPVAILEPVRLAGTVVQRASLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED IK L           D+RVGD V V++AGE+IP+VV +  + R    +PF+ P  C
Sbjct: 360 NEDEIKRL-----------DVRVGDYVYVRKAGEIIPEVVRVDYSARTGQERPFAIPENC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C + VVR +         A+RC    +C AQ  E +KHF SRDA +I+GLG++ ++  
Sbjct: 409 PVCGATVVRLVGE------VAYRCPNK-SCPAQIKESIKHFASRDAMDIKGLGEKIIEQL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     I   AD++ L++    S  ++      G  S   L ++IN  +N  L R I
Sbjct: 462 VDKK----MIGGFADLYKLKKEDLISLDRM------GPKSAEKLINAINSSKNRPLSRLI 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR+VG+  A  LA+ + S  N A+           D   L  +P +G  IA +IV 
Sbjct: 512 YALGIRYVGSRTAEILAERFKSMDNLAKA----------DIQDLSDIPGIGPQIASSIVA 561

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+++ +N+  ++ L +          +      E  K+VFTG L+K  R++A+  V  LG
Sbjct: 562 FFRDEKNLATIKDLARCGIKMAEEESERQEGPWEGWKIVFTGELEKATRNEAENIVKYLG 621

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+ S+ +SR    +++G NPGSKL KAQ+LGVKI++E+ F  L+ +
Sbjct: 622 AIPSSSVSRNVAFVVIGRNPGSKLAKAQELGVKIVDEQTFWKLVDE 667


>gi|113460523|ref|YP_718587.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 129PT]
 gi|122945214|sp|Q0I2H6|DNLJ_HAES1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|112822566|gb|ABI24655.1| DNA ligase (NAD+) [Haemophilus somnus 129PT]
          Length = 673

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 270/712 (37%), Positives = 415/712 (58%), Gaps = 59/712 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L Q + +H+  Y+    P I DSEYD L  +  A+   +P+ A     N P  +
Sbjct: 9   KQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYASE---NSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKIDG 136
           +G +   +  +V H IP LSL+  ++ ED   F+ RI  R       +S+ F  EPK+DG
Sbjct: 66  VGAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRLIHVH--HSLTFCCEPKLDG 123

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             ++I Y  G+ V AA RGDG +GED++A IR I  IP ++L+ N P  +EVRGEV++S+
Sbjct: 124 LAVSILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVFMSQ 183

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAK 252
             F  LN   +A G K +ANPRNAA+G LR+L+P  IT  R L    +G+G    +    
Sbjct: 184 AGFEKLNKTALAKGEKTFANPRNAAAGSLRQLDP-KITGQRPLMLNAYGIGIAEGVELPD 242

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +  LQ ++ +G PVNN ++  +    ++ +Y  +K  RS+L YDIDG V K+++  LQ
Sbjct: 243 THFARLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQ 302

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +++PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV + G  ++NAT
Sbjct: 303 QQLGFISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNAT 362

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I  L           DI +GD V+V+RAG+VIP+++ ++   R  +A+   FPS
Sbjct: 363 LHNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPS 411

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S + +      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++
Sbjct: 412 NCPVCDSVISK----IEGEAVA--RCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIE 465

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              + E     +  PAD+F L    Q +  ++E +   G  S  N   S+ K +  +L R
Sbjct: 466 QLVERE----LVHTPADLFKL---DQVTLMRLERM---GAKSAENALASLAKAKKTTLAR 515

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A +LA ++ + + F           N  +  L +V  VG+++A+ I
Sbjct: 516 FIFALGIREVGETTALNLATHFKTLEAF----------ENATFEQLQKVQDVGEVVAKRI 565

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS------SEIENKKLVFTGTLQKIQRHKA 666
             F+  P N+  V+ L+ +     G H  +V       + ++ K +V TGTL K+ R +A
Sbjct: 566 RSFWSEPHNVAVVKDLIAQ-----GIHWDDVEVKEVRDNPLKGKTVVLTGTLTKMGRSEA 620

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +EY+ QLG  VS  +S KTD +I G++ GSKL KA +LG+ I++E +FL LL
Sbjct: 621 KEYLLQLGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFLALL 672


>gi|167855687|ref|ZP_02478444.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
 gi|167853205|gb|EDS24462.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
          Length = 675

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 269/718 (37%), Positives = 422/718 (58%), Gaps = 64/718 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE   +E  R++L    +E  YH   Y+    P++ D+EYD L      +    P+L  
Sbjct: 4   PIET-QLEHLREKL----REYEYH---YHVLDNPLVPDAEYDRLMNELKNLEWQHPELIT 55

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S+ P     ++G +      ++TH IP LSL+  ++ +DL  F+ RI       + N I 
Sbjct: 56  SDSPT---QRVGAKPLDGFAQITHEIPMLSLDNAFSDDDLIGFLRRIEDRI-AINSNQIE 111

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186
           F  EPK+DG  ++I Y  G    AA RGDG +GED++A IR I  IP ++ + N P  +E
Sbjct: 112 FCCEPKLDGLAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLE 171

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGL 243
           VRGEV++ +  F  LN++ +A G K +ANPRNAA+G LR+L+P   ++    LN +  G+
Sbjct: 172 VRGEVFMPQQGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGV 231

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            ++ +      ++ LQ ++ LG PVN  +  A     + ++Y ++++ RS+L YDIDG V
Sbjct: 232 YESDDELPTTHFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTV 291

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+E +LQ+QLG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +
Sbjct: 292 LKVNEITLQEQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFV 351

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++NATLHN D I+ L            I +GD V+++RAG+VIP++V ++   R  
Sbjct: 352 AGVTVSNATLHNGDEIERL-----------GIAIGDTVIIRRAGDVIPQIVGVVAERRPD 400

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +A+  +FP+ CP+C S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I
Sbjct: 401 NAKKIAFPTACPVCNSAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDI 454

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G++ ++   + E     I  PAD+F L     T+  ++E +   G+ S  N   SI 
Sbjct: 455 DGVGEKLIEQLMERE----LIHTPADLFKL---DHTTLMRLERM---GEKSANNALQSIE 504

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +N +L RF+F+LGIR VG   A++LA ++ +     Q           D  +L +V  
Sbjct: 505 KAKNTTLARFLFALGIRDVGESTAQNLANHFGTLDAIRQA----------DLDTLKQVQD 554

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALL------KEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           VG+++A  + +F+Q P N+  VE L+      ++V P     ++   + +++K +V TGT
Sbjct: 555 VGEVVANRLFQFWQEPHNVEVVEDLIAQGVKWQDVVP-----QEIADNPLKDKTVVLTGT 609

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           L ++ R +A+  + QLG  VS  +S KTD +I G+  GSKL KAQ+LGVKI++E++ +
Sbjct: 610 LTQLTRDQAKALLQQLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667


>gi|119898292|ref|YP_933505.1| DNA ligase (NAD+) [Azoarcus sp. BH72]
 gi|166215393|sp|A1K713|DNLJ_AZOSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119670705|emb|CAL94618.1| DNA ligase (NAD+) [Azoarcus sp. BH72]
          Length = 693

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 273/708 (38%), Positives = 400/708 (56%), Gaps = 61/708 (8%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           EI+ H+  YY    P I D+EYD L R    I  A P+L     P+ P  ++GG     L
Sbjct: 17  EIARHNHAYYVLDTPTIPDAEYDRLFRELQDIEAAHPELL---TPDSPTQRVGGAPLPEL 73

Query: 87  FKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRY 143
             V H++P LS+  E     + +R F TR+       D D ++ +  E K DG  I++RY
Sbjct: 74  VPVRHAVPMLSIRTETDTTAQGVRNFDTRVRNALGLGDGDPAVEYLSELKFDGLAISLRY 133

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E G  V AA RGDG +GEDV+  +R I  IP  L    P +IEVRGE+Y+ ++DF ALN+
Sbjct: 134 EHGVLVRAATRGDGETGEDVTHNVRTIQQIPLRLHGAAPAVIEVRGEIYMRRDDFEALNN 193

Query: 204 EMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAKGQYEMLQKM 261
                G K + NPRNAA+G +R+L+P     R L+FF +GLG+ +       Q E+L ++
Sbjct: 194 RQREAGDKVFVNPRNAAAGAVRQLDPRIAARRPLSFFAYGLGEHAGFDLPATQAELLTRL 253

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
              G PV      ++   G++++++ + ++R+ LPYDIDG+VYKV+   LQ++LG   R 
Sbjct: 254 AAFGVPVCEHREVSSGPEGLIAFHDRIAALRNELPYDIDGVVYKVNRVDLQRELGFVTRE 313

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HK+  ++  TRL  ID+Q+GRTG LTPVARLEPV +GG  +TNATLHN+D I  
Sbjct: 314 PRWAVAHKYPAQEEITRLAGIDVQVGRTGALTPVARLEPVFVGGVTVTNATLHNQDEID- 372

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF----SFPSFCPIC 437
                      +D+RVGD V+V+RAG+VIP+VV  ++  R  +   F    S+P+ CP+C
Sbjct: 373 ----------RKDVRVGDWVIVRRAGDVIPEVVGPVLERRVGEPPRFNLLASYPT-CPVC 421

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S VVR      G+  A  RC+GGL C AQ+ + L HF  R A +IEGLG + ++     
Sbjct: 422 GSHVVR------GEDEAVARCSGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVEQLVD- 474

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  ++ PAD++ L          + N+   G+ S  NL  +I K RN +L RFIF+L
Sbjct: 475 ---ASIVKTPADLYKL------GILALANLERMGEKSAQNLLAAIEKSRNTTLARFIFAL 525

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR+VG   A+ LA+++ S       ++ ++A    D  +L +VP VG ++A+ I EF+ 
Sbjct: 526 GIRNVGEATAKDLARHFGS-------LDALLAA---DEGALQQVPDVGPVVAKCIAEFFA 575

Query: 618 NPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
              N+  VE L       +E +P+        S  +     V TGTL  + R +A+  + 
Sbjct: 576 EAHNVEVVEQLRAAGLRWEEGAPA-----APASGSVAGLTFVITGTLPTLSRDEAKALIE 630

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G  VS  +S+KTD ++ G   GSKL KAQ LGV I++E+    LL+
Sbjct: 631 AHGGKVSGSVSKKTDYLVAGAEAGSKLAKAQDLGVDIVDEDGLRRLLE 678


>gi|237747723|ref|ZP_04578203.1| DNA ligase [Oxalobacter formigenes OXCC13]
 gi|229379085|gb|EEO29176.1| DNA ligase [Oxalobacter formigenes OXCC13]
          Length = 685

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 270/713 (37%), Positives = 405/713 (56%), Gaps = 61/713 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++ + L  EI  ++  YY    PI+ DSEYD L R+   +  A P+L     P+ P  ++
Sbjct: 17  EQAARLRSEIERYNIAYYVLDAPIVPDSEYDRLFRQLQELEKAHPELVV---PDSPTQRV 73

Query: 79  GGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG + L+ F KV H IP LSL+   + E++  F  RI     + D  ++ +  E K DG 
Sbjct: 74  GG-LPLAQFEKVEHKIPMLSLQNGLSEEEVAAFDKRIS---DELDGENVEYEAELKFDGL 129

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            + +RYE G  V AA RGDG SGE+++  I+ + TIP R+  L  PE++EVRGEV + K 
Sbjct: 130 AVNLRYENGLLVQAATRGDGTSGENITNNIKTVRTIPLRLSDLAPPEVLEVRGEVLMFKK 189

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQ 254
           DF  LN       +K + NPRNAA+G LR+L+     TR L FF +GLG+       + Q
Sbjct: 190 DFHDLNRRQRENEQKEFVNPRNAAAGSLRQLDSQITATRQLRFFAYGLGELKGSPLPRSQ 249

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L     LG PV +  +    F G++ ++N ++  R +LPY+IDG+VYKV+  + Q++
Sbjct: 250 SALLDWFVQLGIPVCDERKVVKGFKGLMGFFNRIEEKRESLPYEIDGVVYKVNSIAEQQK 309

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ I+HKF  ++  T +LDID+Q+GRTG +TPVARL+PV +GG  +TNATLH
Sbjct: 310 LGFISRAPRFAIAHKFPAQEVLTEVLDIDVQVGRTGAITPVARLKPVFVGGVTVTNATLH 369

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +D+R+GD V+V+RAG+VIP+V+ ++   R  DA+ F  P+ C
Sbjct: 370 NEDEVR-----------RKDVRIGDTVIVRRAGDVIPEVLAVVPERRQADAREFVMPTVC 418

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           P+C S ++R  +       A  RC+GG + C AQ+   L  FVSR A  IEGLG+Q +D 
Sbjct: 419 PVCGSPIIRPEDE------AIARCSGGWIKCPAQKKGGLLLFVSRKALGIEGLGEQLIDQ 472

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     I   AD++TL     +   ++       + S +NL   + K +  +  RF
Sbjct: 473 LVDKN----VINDAADLYTLDLETLSQLDRM------AEKSASNLLGELEKSKKTTFARF 522

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIRHVG   AR+LA Y+ +  N  Q               L+ V  +G I+A +I 
Sbjct: 523 LYALGIRHVGEATARALAGYFGNLANLRQASEE----------QLLEVADIGPIVAASIK 572

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRH-------EKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +F+ + RN+  V+ LL      +G H       EK      +NKK V TGTL  + R  A
Sbjct: 573 QFFSDERNLALVDKLL-----GVGLHWPEHEMKEKPEELPFQNKKFVLTGTLPSLTRDAA 627

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            E +  LG  VS+ +SR TD ++ G  PGSKL KA++LGV++++E +FL L++
Sbjct: 628 AEIIRNLGGKVSSSVSRNTDYVLAGSEPGSKLAKAEELGVRVIDENEFLQLVK 680


>gi|269138493|ref|YP_003295193.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
 gi|267984153|gb|ACY83982.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
 gi|304558517|gb|ADM41181.1| DNA ligase [Edwardsiella tarda FL6-60]
          Length = 675

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 265/717 (36%), Positives = 407/717 (56%), Gaps = 58/717 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +IEQ   +L  L   + +H+  YY   +P + D+EYD L  +   +    P L  ++ P+
Sbjct: 4   TIEQ---QLEQLRDALRHHEYQYYVLDEPQVTDAEYDRLMAQLKQLEAEHPALVTADSPS 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GG    +  +V H +P LSL+ +++ E  + F  R++   + K    + F  EP
Sbjct: 61  ---QRVGGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHE--RLKSGEPLTFCCEP 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  +++ YE+G  V AA RGDG +GED++A ++ I  IP R+  + IP  IEVRGEV
Sbjct: 116 KLDGLAVSLLYEQGMLVRAATRGDGSTGEDITANVKTIRAIPLRLQGVAIPARIEVRGEV 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEI 249
           ++ ++ F A+N+E    G K +ANPRNAA+G LR+L+P     R L F+ +G G      
Sbjct: 176 FMPQDGFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGSGLLEGGT 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                Y+ LQ+ +  G PV+  V+       +++YY + +  R  L +DIDG+V KVD+ 
Sbjct: 236 LPDSHYQCLQRFKSWGLPVSERVKLCCGSAEVLAYYRQTEQDRPGLGFDIDGVVIKVDDI 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++Q++LG  AR+PRW  + KF  ++  TRL  ++ Q+GRTG +TPVARLEPV + G  ++
Sbjct: 296 AIQERLGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVQVAGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L           D+R+GD V+V+RAG+VIP+VV ++   R  DA    
Sbjct: 356 NATLHNADEIERL-----------DLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDALEIG 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RC+GGL C+AQ+ E LKHFVSR A ++EG+G +
Sbjct: 405 FPTHCPVCGSEVER----TEGEAVA--RCSGGLICAAQRKESLKHFVSRRAMDVEGMGDK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     +  PAD++ L      S  K+  +   G  S T L  ++ + R  +
Sbjct: 459 VIEQLVDKE----YVATPADLYRL------SAGKLTGLERMGPKSATKLIAALERSRETT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+F+LGIR VG   A +LA ++ S Q          A    D  SL RVP VG+++A
Sbjct: 509 LARFLFALGIREVGEATAANLASHFGSLQ----------ALRAADLESLKRVPEVGEVVA 558

Query: 610 QAIVEFYQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             IV F     N   ++ L+         E +P+  +    + S    K +V TG+L  +
Sbjct: 559 SHIVHFLSEAHNRQVIDELISDEVGIRWPEGAPA--QSAPAIDSPFAGKTVVLTGSLSVL 616

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A++ +T LGA VS  +S+KTD++I G+  GSKL KA  LG+++++E Q L +L
Sbjct: 617 SRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKANALGIEVIDEAQMLRML 673


>gi|227356188|ref|ZP_03840577.1| DNA ligase [Proteus mirabilis ATCC 29906]
 gi|227163652|gb|EEI48568.1| DNA ligase [Proteus mirabilis ATCC 29906]
          Length = 675

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/712 (36%), Positives = 417/712 (58%), Gaps = 53/712 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L   + +H+  Y+    P I D+EYD L  +  A+    P+L     P+ P  +
Sbjct: 6   QQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELI---TPDSPTQR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +  +V H IP LSL+  ++      F  R+    + K++  I F  E K+DG 
Sbjct: 63  VGALPLTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRE--RLKNNEEITFCCELKLDGL 120

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ YE G+ V AA RGDG +GE+++  +R I  IP R+   NIP  IE+RGEV++++ 
Sbjct: 121 AVSLLYENGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFMTEK 180

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKG 253
            F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+    
Sbjct: 181 GFEHLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL-PTS 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y  LQ+ +  G PV++ ++       ++ +Y+ +  IR  L +DIDG+V KVD+ +LQ+
Sbjct: 240 HYARLQQFKKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIALQE 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +R+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV + G +++NATL
Sbjct: 300 ELGFVSRAPRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNATL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            +R+GD V+++RAG+VIP+VV +I  +R  +AQ   FP+ 
Sbjct: 360 HNADEIERL-----------GLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFPTQ 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CPICQS    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G + +D 
Sbjct: 409 CPICQS----DIERIEGEAVA--RCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKIIDQ 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + E     ++ PAD+F L  +  +   ++      G+ S   L +++ K ++ +  RF
Sbjct: 463 LVEKE----YVKTPADLFRLDEKILSGLERM------GEKSAKKLLNALEKAKSTTFARF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGIR VG   A  L  +++S +   +   NI A        L  VP VGDI+A+ +V
Sbjct: 513 IYALGIREVGEATANGLTAHFVSLEALREA--NIEA--------LKAVPDVGDIVAKHVV 562

Query: 614 EFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            F+Q   N   ++ L+ ++     +P +  HE    +    K +V TG+L ++ R +A++
Sbjct: 563 NFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAG-DNPFAGKTVVLTGSLSQLTRDEAKD 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LGA VS  +S+KTD++I G+  GSKL KA +LG+ +++E++ + LL+Q
Sbjct: 622 RLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDEMIRLLEQ 673


>gi|325576592|ref|ZP_08147310.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
           33392]
 gi|325161155|gb|EGC73270.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
           33392]
          Length = 675

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 264/712 (37%), Positives = 416/712 (58%), Gaps = 47/712 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  +I   ++++ +L  ++  ++  Y+    P I D+EYD L  +  A+  A P+L  
Sbjct: 4   PLE--NIMSLQQQIDTLRHDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELIT 61

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           ++ P     ++G +      ++ H IP LSL+  ++ E+   F+ RI     +  +  + 
Sbjct: 62  ADSPT---QRVGAKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLPE-PLT 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186
           F  EPK+DG  ++I Y  G    AA RGDG +GED++A IR I  IP ++L  N P  +E
Sbjct: 118 FCCEPKLDGLAVSILYVNGILTQAATRGDGATGEDITANIRTIRNIPLQLLMDNPPARLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++    F  LN + +  G K +ANPRNAA+G LR+L+P   + R L    +G+G 
Sbjct: 178 VRGEVFMPHAGFERLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGI 237

Query: 246 TSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              +      Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS L YDIDG V 
Sbjct: 238 AEGVDLPNTHYDRLQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSALGYDIDGTVL 297

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+++ +LQ++LG  +++PRW I++KF  ++  TRL D++ Q+GRTG +TPVA+LEPV + 
Sbjct: 298 KINDIALQEKLGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVA 357

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I+ L           DI +GD V+++RAG+VIP+++ ++ + R  D
Sbjct: 358 GVTVSNATLHNGDEIERL-----------DIAIGDTVVIRRAGDVIPQIIGVLHDRRPAD 406

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P  FP  CP+C S +VR      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+
Sbjct: 407 ARPIVFPKTCPVCDSAIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDID 460

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     +  PAD+F L     T+ T++E +   G  S  N   S+ K
Sbjct: 461 GVGGKLIEQLVDRE----LVHTPADLFKL---DLTTLTRLERM---GAKSAENALASLEK 510

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +N +L RFIF+LGIR VG   A +LA ++ + +          A  N D  +L +VP V
Sbjct: 511 AKNTTLARFIFALGIREVGEATALNLANHFKTLE----------ALQNADLEALQQVPDV 560

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G+++A  I+ F+  P N+  V  L+ + V       ++   +  + K +V TGTL ++ R
Sbjct: 561 GEVVANRILAFWHEPHNVAVVNDLIAQGVRWETVETKEVAENRFKGKTVVLTGTLTQMGR 620

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           ++A+  +  +GA VS  +S KTD +I GD  GSKL KAQ+LGV ++ EE+FL
Sbjct: 621 NEAKALLQDMGAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEEEFL 672


>gi|163845839|ref|YP_001633883.1| DNA ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222523550|ref|YP_002568020.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl]
 gi|190359243|sp|A9WCA1|DNLJ_CHLAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781286|sp|B9LHI6|DNLJ_CHLSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163667128|gb|ABY33494.1| DNA ligase, NAD-dependent [Chloroflexus aurantiacus J-10-fl]
 gi|222447429|gb|ACM51695.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl]
          Length = 709

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 270/713 (37%), Positives = 384/713 (53%), Gaps = 60/713 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL SL +   YH   YY    PI+ D+EYDAL     A+  A P+L     P+ P  ++ 
Sbjct: 12  ELRSLIRRYDYH---YYVLDDPIVSDAEYDALMTELRALEAAHPELI---TPDSPTQRVS 65

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G       KV H  P LSL   +   DL  +  R+ R      D  + + +EPKIDG  +
Sbjct: 66  GTPASQFAKVQHPQPMLSLGNAFTKADLLAWRDRVLRLLGP--DAIVAYVVEPKIDGLAV 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-----------LNIPEIIEVR 188
            + Y  G+ V  A RGDG  GEDV+A +R I +IP  L              +P  IEVR
Sbjct: 124 ALTYRDGRLVQGATRGDGEVGEDVTANLRTIGSIPLTLQATSTPQDDDLPTTLPTTIEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+   DF  LND + A G K +ANPRNAA+G LR+ +PT    R L FF +G+G   
Sbjct: 184 GEVYMRTADFETLNDRLAAAGEKIFANPRNAAAGSLRQKDPTITAARPLRFFAYGVGVVE 243

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            I    Q++ L+ +R LGFPVN  VR+   F  +++Y     + R  LPY+ DG+V K+D
Sbjct: 244 GISLSSQWQTLRYLRALGFPVNQDVRRFTDFAEVLAYCEAWMAKRDDLPYEADGVVIKID 303

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+ Q++LG   R PRW I+ KF  ++A TRLLDI + +GRTG++TP A LEPV IGG  
Sbjct: 304 DFAQQRELGVVGRDPRWAIAFKFPAREAITRLLDITVNVGRTGVVTPNAELEPVQIGGVT 363

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           + NA+LHN DYI             RDIR+GD V+VKRAG+VIP VV  ++  R    +P
Sbjct: 364 VRNASLHNADYI-----------AQRDIRIGDYVIVKRAGDVIPYVVGPVIARRDGSERP 412

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP+ CP C S + R+         AA RC     C AQ + R++HFVSR A +I G+G
Sbjct: 413 WQFPTHCPACGSPLEREEGE------AAWRCNNFSICPAQLVRRVEHFVSRSALDIVGMG 466

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q + F +       IR  ADIF L+  Q      +  + GFG   + NL  +I+  R 
Sbjct: 467 ERQAELFVQRG----LIRDVADIFFLKADQ------LAELEGFGPKRIANLLAAIDAARQ 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L+R +  LGIR+VG   A++L     S       ++ I+A   ++   L ++P +G +
Sbjct: 517 RPLDRLLVGLGIRYVGTVAAQTLVAALGS-------LDAIMAARQEE---LEQIPGIGPV 566

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A +IV+F+  P N   +E  L+     +G        S  +  K  V TGTL  + R +
Sbjct: 567 VAASIVDFFSRPANRALIEK-LRAAGVQMGGVSGPTRQSDTLAGKTFVLTGTLPSLSREQ 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A   +   G  V+  +S+KT  ++ G N GSKL KA QLG+ +++E   L L+
Sbjct: 626 ASALIVAHGGKVTDSVSKKTSYVVAGANAGSKLAKALQLGIPVIDEAGLLALI 678


>gi|219870289|ref|YP_002474664.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
 gi|254781340|sp|B8F314|DNLJ_HAEPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219690493|gb|ACL31716.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
          Length = 675

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 265/708 (37%), Positives = 417/708 (58%), Gaps = 49/708 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SIE   + L    +E  YH   Y+    P++ D+EYD L      +    P+L  S+ P 
Sbjct: 4   SIETQLEHLREKLREYEYH---YHVLDNPLVPDAEYDRLMNELKNLEWQHPELITSDSPT 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++G +      ++TH IP LSL+  ++ +DL  F+ RI       + N I F  EP
Sbjct: 61  ---QRVGAKPLDGFAQITHEIPMLSLDNAFSDDDLTGFLRRIEDRI-AINSNQIEFCCEP 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  ++I Y  G    AA RGDG +GED++A IR I  IP ++ + N P  +EVRGEV
Sbjct: 117 KLDGLAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSE 248
           ++ +  F  LN++ +A G K +ANPRNAA+G LR+L+P   ++    LN +  G+ ++ +
Sbjct: 177 FMPQQGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGVYESDD 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 ++ LQ ++ LG PVN  +  A     + ++Y ++++ RS+L YDIDG V KV+E
Sbjct: 237 ELPTTHFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNE 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  +
Sbjct: 297 ITLQEQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            I +GD V+++RAG+VIP++V ++   R  +A+  
Sbjct: 357 SNATLHNGDEIERL-----------GIAIGDTVIIRRAGDVIPQIVGVVAERRPDNAKKI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           +FP+ CP+C S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G+
Sbjct: 406 AFPTACPVCNSAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGE 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   + E     I  PAD+F L     T+  +++ +   G+ S  N   SI K +N 
Sbjct: 460 KLIEQLMERE----LIHTPADLFKL---DHTTLMRLDRM---GEKSANNALQSIEKAKNT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF+F+LGIR VG   A++LA ++ +     Q           D  +L +V  VG+++
Sbjct: 510 TLARFLFALGIRDVGESTAQNLANHFGTLDAIRQA----------DLDTLKQVQDVGEVV 559

Query: 609 AQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A  + +F+Q P N+  VE L+ + V+      ++   + +++K +V TGTL ++ R +A+
Sbjct: 560 ANRLFQFWQEPHNVEVVEDLIAQGVTWQDVVPQEIADNPLKDKTVVLTGTLTQLTRDQAK 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
             + QLG  VS  +S KTD +I G+  GSKL KAQ+LGVKI++E++ +
Sbjct: 620 ALLQQLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667


>gi|260598800|ref|YP_003211371.1| NAD-dependent DNA ligase LigA [Cronobacter turicensis z3032]
 gi|260217977|emb|CBA32625.1| DNA ligase [Cronobacter turicensis z3032]
          Length = 672

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/716 (36%), Positives = 416/716 (58%), Gaps = 53/716 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R   A+  A P+L     P+ 
Sbjct: 1   MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++      F  R+    + K+ +++ +  E K
Sbjct: 58  PTQRVGAAPLTAFSQVRHEVPMLSLDNVFDEASFLAFNKRVQD--RLKNTDALVYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GED++  +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQTGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +     LQ+ +  G PV++ +R   T   ++++Y ++++ R TL +DIDG+V KVD  
Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRIRLVKTPEDVLAFYRQVEADRPTLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++
Sbjct: 295 ELQEQLGFVARAPRWAVAFKFPAQEQLTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  
Sbjct: 355 NATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTQCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  NL  ++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNLVTALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA ++ + +     IN  I    DD   L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEAL---INASI----DD---LQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
             +  F++   N   +  L +EV     +P + + E+ + S    K +V TG+L ++ R 
Sbjct: 558 THVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEE-IDSPFAGKTVVLTGSLSQMSRD 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            A+  +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL +
Sbjct: 617 DAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 672


>gi|319941620|ref|ZP_08015944.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
 gi|319804850|gb|EFW01704.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
          Length = 745

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 266/722 (36%), Positives = 402/722 (55%), Gaps = 53/722 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ALS +QA   +  LE E+   +  YY   +P + D+EYD       A+   FP+L   + 
Sbjct: 51  ALSPDQAPARMHQLETELERWNYEYYVLDEPSVPDAEYDRAFNELKALEARFPEL---KS 107

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIF 127
              P  ++GG +     KV H +P LS+  E  ++      F  R+        +D  + 
Sbjct: 108 RTSPTLRVGGAVRTGFKKVRHDVPMLSIHTETDFSAAGAAAFDERVRSALGLSPEDPPVE 167

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  E K DG    +RYEKG    A+ RGDG  GEDV+A +R I TIP  L+  +P+I+EV
Sbjct: 168 YDCELKFDGLATNLRYEKGVLTEASTRGDGVEGEDVTANVRTIRTIPLRLNGKVPDILEV 227

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE  + K DFLALN    A G KP+ANPRNAA+G LR+L+ +    R L+F+ + LG+ 
Sbjct: 228 RGECIMHKADFLALNARQEAAGEKPFANPRNAAAGSLRQLDSSVTAQRTLHFYGYSLGEV 287

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE FA+ Q  +L +   LGFPV +          + ++++++ + R++LP++IDG+VYKV
Sbjct: 288 SEPFAETQSGVLDRFAELGFPVAHMREVVKGPEALAAFHDKVAAARASLPFEIDGVVYKV 347

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +   L+++LG  AR PRW  +HK+  ++  T++L ID+Q+GRTG LTPVARL PV +GG 
Sbjct: 348 NSLELEEELGFIAREPRWACAHKYPPEEVLTQVLGIDVQVGRTGRLTPVARLAPVYVGGV 407

Query: 367 LITNATLHNEDY-IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++NATLHNED+ +K L           D+RVGD V+++RAG+VIP+++ ++   R    
Sbjct: 408 TVSNATLHNEDHVVKDL-----------DLRVGDTVVLRRAGDVIPEILRVVKERRPAGT 456

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P  CPIC S V+RD   K        RCTGGL C AQ    + HF +R A  I+G
Sbjct: 457 KVFEMPHVCPICGSAVIRDEEEKD------MRCTGGLVCPAQMKLSIVHFAARRAMGIDG 510

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQ-------RRQQTSTTKIENILGFGDVSVTNL 538
           LG++ +D      D    ++ PAD+F L              + K E  +  G  +  NL
Sbjct: 511 LGEKIVDMLV---DEGL-VKTPADLFGLTLEALTAPTTATAGSEKPEKRM--GPKAAANL 564

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             SI    + +L RF+F+LG RHVG   A  LA ++            + A  N    +L
Sbjct: 565 LASIQASTHTTLARFVFALGCRHVGEATALGLANHF----------GTLSAIENASMEAL 614

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTG 656
             VP VG+++A++I  F++ P N   ++AL+      P++   EK   S +  K  V TG
Sbjct: 615 TGVPDVGEVVAESIYAFFREPHNRTVIDALIARGIRWPAV---EKTAPSLVSGKTFVLTG 671

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R +A++ +T  GA V+  +SR+T  ++ G + GSKL KA++LG+ +++E + L 
Sbjct: 672 TLPTLSRDEAKDRLTAQGAKVAGSVSRRTWCVVAGADAGSKLSKAEELGIPVIDEAKLLM 731

Query: 717 LL 718
           LL
Sbjct: 732 LL 733


>gi|187477571|ref|YP_785595.1| DNA ligase [Bordetella avium 197N]
 gi|123752160|sp|Q2KUU5|DNLJ_BORA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115422157|emb|CAJ48681.1| DNA ligase [Bordetella avium 197N]
          Length = 695

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 278/735 (37%), Positives = 408/735 (55%), Gaps = 74/735 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + AR++ + L  EI+ H+  YY Y +P I D++YDAL R   A+    P+L     P+ P
Sbjct: 6   QAAREQAARLRAEIAQHNIRYYVYDEPSITDADYDALMRELMALEAQHPELV---TPDSP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-----DNSIFFT 129
             ++G         V H++P LSL   +  ED+  F  R+    ++       + + +F 
Sbjct: 63  TQRVGAAPLAEFGSVRHAVPMLSLGNGFEDEDVLAFDKRVSDTLREAGLLGPAEQAHYFC 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E K+DG  I++RYE G+ V AA RGDG  GEDV+A IR I  IP  L    P ++EVRG
Sbjct: 123 -ELKLDGLAISLRYENGELVQAATRGDGQEGEDVTANIRTIRAIPLQLRAGAPAVLEVRG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF------VHG 242
           EV +++ DF  LN +  A G K + NPRNAA+G LR+L+P     R L FF      V G
Sbjct: 182 EVLMNRADFEKLNQKQAARGEKIFVNPRNAAAGSLRQLDPRVTAQRPLRFFAYSWGEVQG 241

Query: 243 L-------------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYN 286
           L             G  S +       ML  +  LG PVN  VR   +A    G++++Y 
Sbjct: 242 LSRDDAPAFDEASPGLVSTLPRDTHGGMLDWLAGLGLPVN--VRFNHKAQGAEGLLAFYR 299

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346
            + + R +LPYDIDGLVYKVD  + Q+ LG  AR+PRW ++HKF  ++A+T LLDI++Q+
Sbjct: 300 RIGAERGSLPYDIDGLVYKVDALAAQRVLGYVARAPRWALAHKFPAEEATTELLDIEVQV 359

Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406
           GRTG +TPVARL+PV +GG  +TNATLHNED I+            +D+R+GDRV+V+RA
Sbjct: 360 GRTGAITPVARLKPVFVGGVTVTNATLHNEDEIR-----------RKDVRIGDRVIVRRA 408

Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466
           G+VIP+VV  ++ +R  +   F  P+ CPIC S + R ++       A  RCTGGL C A
Sbjct: 409 GDVIPEVVGPVLEKRSGELPQFVMPTHCPICGSAIERLVDE------AIARCTGGLFCPA 462

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526
           Q+ + L H   R A +IEGLG++ ++    +     S++  AD+F L   +  +  ++  
Sbjct: 463 QRKQTLLHAAGRKALDIEGLGEKLVEQLVDNG----SLKTLADVFRLNAFELAALDRM-- 516

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
               G  S  NL  +I++ R  SL R +F+LGIRHVG   AR +A+++           N
Sbjct: 517 ----GKKSADNLVAAIDQARRPSLGRLLFALGIRHVGETTARDVARHF----------GN 562

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSS 645
           I A  + D  +L+ VP VG ++A +I  F+Q   N   +  L K+ V P      +  S 
Sbjct: 563 IDAIMDADEAALLAVPDVGPVVAGSIHRFFQEAHNREVIRELEKQGVHPQA--EAQLQSG 620

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
           ++  K  V TGT+    R +A  ++   G  VS  +S+KT  ++ G+  GSKL KA++LG
Sbjct: 621 DLAGKTFVLTGTMPTWSRDEATRHILAAGGKVSGSVSKKTAYVVAGEEAGSKLVKARELG 680

Query: 706 VKIMNEEQFLFLLQQ 720
           V I++E+    LL Q
Sbjct: 681 VTILDEDGLKALLSQ 695


>gi|149374973|ref|ZP_01892746.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
 gi|149360862|gb|EDM49313.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
          Length = 676

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/699 (36%), Positives = 400/699 (57%), Gaps = 47/699 (6%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           I+ H+  YY    P + D+EYD L R    +   +PD+     P+ P  ++GG +  +  
Sbjct: 19  ITEHNYQYYVLDDPRVPDAEYDRLFRELQDLETQYPDIVT---PDTPTRRVGGSVETTFE 75

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           +V H IP LSL+  ++ E+LR F  R+    +  DD  I +  EPK+DG  +++ YE G 
Sbjct: 76  EVVHRIPMLSLDNAFSDEELRDFDRRVKDRLKTGDD--IEYVCEPKLDGLAVSLHYESGV 133

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
              AA RGDG++GED++A IR IP++P R+    +PE++EVRGEVY+ +  F ALN  + 
Sbjct: 134 LTRAATRGDGYTGEDITANIRTIPSVPLRLRGDKVPELVEVRGEVYMPREGFEALNRRLA 193

Query: 207 AVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE-IFAKGQYEMLQKMRCL 264
             G K + NPRNAA+G LR+  PT   R  L    + +    E +     +E LQ++   
Sbjct: 194 NKGEKTFVNPRNAAAGSLRQKKPTVTARRPLELCAYSVALEDESLLPATHWEGLQQVSAW 253

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF +N  +R+A      +  YNE+   R++LPY+IDG+V+KV+  +LQ+QLG  +R+PRW
Sbjct: 254 GFRINPEMRRATGAEDCLQAYNELMGKRASLPYEIDGIVFKVNSLALQQQLGFVSRAPRW 313

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I+ KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NATLHN D I+ LDA
Sbjct: 314 AIAQKFPAQEELTVIEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATLHNMDEIRRLDA 373

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                      R+GD V V+RAG+VIP+VV ++   R  +A+    P  CP+CQS +V+ 
Sbjct: 374 -----------RIGDTVFVRRAGDVIPQVVKVVAERRPANAREVELPDACPVCQSDIVQ- 421

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                G++VA  RC+GGL C AQ+ E ++H+ SR A +IEGLG + +D     E     +
Sbjct: 422 ---IEGEVVA--RCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDILVDRE----LV 472

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
              AD++ L++   T   ++      G+ S  NL D+I++ R   L +F+++LGIR VG 
Sbjct: 473 NTVADLYLLKKADLTGLERM------GEKSAGNLIDAIDRSRKPVLWKFLYALGIREVGE 526

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A+ LA Y+ + ++        I+  ++D  +L  VP VG I+A  I  F+    N   
Sbjct: 527 ATAKGLASYFGTLES--------ISEADED--ALQSVPDVGPIVAGHIRSFFDQTHNQET 576

Query: 625 VEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           ++A LK+        E   S + ++ +  V TG+L  + R  A+  +  LGA V+  +S 
Sbjct: 577 IQA-LKDAGVQWQAEEITASQKPLKGETWVLTGSLSGMTRDDAKSKLESLGAKVAGSVSG 635

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           KT  ++ G+  GSKL KA+ LGV +M+E  F+  L  + 
Sbjct: 636 KTSCVVAGEAAGSKLTKAENLGVPVMDESAFVDFLATHG 674


>gi|197285679|ref|YP_002151551.1| NAD-dependent DNA ligase LigA [Proteus mirabilis HI4320]
 gi|254781393|sp|B4EZR2|DNLJ_PROMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194683166|emb|CAR43788.1| DNA ligase [Proteus mirabilis HI4320]
          Length = 675

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/712 (36%), Positives = 416/712 (58%), Gaps = 53/712 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L   + +H+  Y+    P I D+EYD L  +  A+    P+L     P+ P  +
Sbjct: 6   QQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELIT---PDSPTQR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +  +V H IP LSL+  ++      F  R+    + K++  I F  E K+DG 
Sbjct: 63  VGALPLTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRE--RLKNNEEITFCCELKLDGL 120

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ YE G+ V AA RGDG +GE+++  +R I  IP R+   NIP  IE+RGEV++++ 
Sbjct: 121 AVSLLYENGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFMTEK 180

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKG 253
            F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+    
Sbjct: 181 GFEHLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL-PTS 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y  LQ+ +  G PV++ ++       ++ +Y+ +  IR  L +DIDG+V KVD+ +LQ+
Sbjct: 240 HYARLQQFKKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIALQE 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +R+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV + G +++NATL
Sbjct: 300 ELGFVSRAPRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNATL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            +R+GD V+++RAG+VIP+VV +I  +R  +AQ   FP+ 
Sbjct: 360 HNADEIERL-----------GLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFPTQ 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CPICQS    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G + +D 
Sbjct: 409 CPICQS----DIERIEGEAVA--RCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKIIDQ 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + E     ++ PAD+F L  +  +   ++      G+ S   L +++ K ++ +  RF
Sbjct: 463 LVEKE----YVKTPADLFRLDEKILSGLERM------GEKSAKKLLNALEKAKSTTFARF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGIR VG   A  L  +++S +   +   NI A        L  VP VGDI+A+ +V
Sbjct: 513 IYALGIREVGEATANGLTAHFVSLEALREA--NIEA--------LKAVPDVGDIVAKHVV 562

Query: 614 EFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            F+Q   N   ++ L+ ++     +P +  HE    +    K +V TG+L ++ R +A++
Sbjct: 563 NFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAG-DNPFAGKTVVLTGSLSQLTRDEAKD 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LGA VS  +S+KTD++I G+  GSKL KA +LG+ +++E++ + LL Q
Sbjct: 622 RLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDEMIRLLDQ 673


>gi|88607345|ref|YP_504763.1| DNA ligase, NAD-dependent [Anaplasma phagocytophilum HZ]
 gi|123736456|sp|Q2GLI8|DNLJ_ANAPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|88598408|gb|ABD43878.1| DNA ligase, NAD-dependent [Anaplasma phagocytophilum HZ]
          Length = 677

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 263/716 (36%), Positives = 413/716 (57%), Gaps = 43/716 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S   +R+ L+ L  ++  HD  Y+++  P I D++YDAL +    +   FP+L+   D 
Sbjct: 1   MSDNDSRRRLADLNAQLKLHDVLYHEHDAPEISDAQYDALVQEKRELLEKFPELSAYNDY 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            G +  +   ++  L K+ H  P LSLE  + I+D+ KFI+R+ R      + SI    E
Sbjct: 61  EGVIGAL--TVDARLPKIAHREPMLSLENSFTIQDVEKFISRVKRSLNMDPEVSITIACE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG      YEKG  +  A RG+GH GED++   + I  +P  ++ N PE++EVRGE+
Sbjct: 119 PKIDGLSFAALYEKGSLIRVATRGNGHLGEDITNTAKVIRKLPHKIA-NAPEVLEVRGEI 177

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+  +DF  L D         +ANPRNAA+G +R+LNP     R L +  + +  ++   
Sbjct: 178 YMHHSDFEKLKDVC------NFANPRNAAAGSIRQLNPKIAEERNLRYVAYCIVNSA--- 228

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q  +L+++   GF  +  V  A+     +S++  M + RSTL YDIDG+VYKV++  
Sbjct: 229 LASQEAILKQLAEWGFCTHTEVLFADNMDDALSFHTRMYNTRSTLGYDIDGIVYKVNDTH 288

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQK LG  ++ PRW  +HKF   +A T+L DI +Q+GRTG++TP+A LEP+NIGG L++ 
Sbjct: 289 LQKLLGSTSKYPRWATAHKFPSTEAITKLRDISVQVGRTGVITPIAELEPINIGGTLVSR 348

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP--F 428
           A+LHN + I             +DIR+GD V+VKRAGEVIP+VV +    R   A P  +
Sbjct: 349 ASLHNLNEI-----------ARKDIRIGDSVIVKRAGEVIPQVVGVDHTARCNSAVPEEY 397

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FPS CP C S + R      G++  A RCT  L+C AQ LER+KHFVSRD  NI GLG+
Sbjct: 398 VFPSHCPSCGSTLSR----APGEV--AMRCTAELSCQAQVLERVKHFVSRDGLNIVGLGE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +Q++FF      A  I   ADIF+L  R++ S   +    G+G+ S+  L ++IN    +
Sbjct: 452 KQIEFFCN----ASYISNVADIFSL--REKISHMNLSAEHGWGEKSIALLINAINASTTV 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FIF+LGIR +G   A+ +A++Y SY  + + + ++    + D +  I +  +    
Sbjct: 506 KLSNFIFALGIRFIGKGAAKLIAEHYRSYSAWVRAMTSLANGEDPDNIHGIGLKSI---- 561

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +++  F+ +  N+  ++ L ++++          +S I  K +VFTG L+ + R++A +
Sbjct: 562 -ESLRAFFSSEDNLRVLQTLEEKLNILNEIANTETASPISGKTIVFTGVLEDMSRNEAAK 620

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           Y   LGA V   ++ KTDI++ G N GSKL+ A++LG+++MNE ++  LL+  + +
Sbjct: 621 YAETLGAKVGNTVTTKTDILVAGSNSGSKLDTARKLGIQVMNESEWKDLLKTVSNS 676


>gi|332306125|ref|YP_004433976.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173454|gb|AEE22708.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 677

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 272/721 (37%), Positives = 413/721 (57%), Gaps = 57/721 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ALS  Q   +L +   E +Y    YY    P + D+EYD L R    I  A PDL RS  
Sbjct: 4   ALSPAQRLTQLINTINEYNYQ---YYVQDNPSVPDAEYDRLMRELLDIEKAHPDL-RS-- 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  K+GG    +  +V H +P LSL+  ++ +D+  F  RI    + K  + I F+ 
Sbjct: 58  PDSPSQKVGGAALSAFEQVEHEVPMLSLDNAFDEDDMFAFEKRIKD--RLKITSEISFSC 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEV 187
           EPK+DG  ++I YE GK V AA RGDG  GE+++  +R I  +P  LSL   + P+ +EV
Sbjct: 116 EPKLDGLAVSILYEDGKLVRAATRGDGRVGENITTNVRTIANVP--LSLRGEDFPQRLEV 173

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244
           RGEV +++  F  LN+  I  G+KP+ NPRNAA+G LR+L+P     R L F+ + LG  
Sbjct: 174 RGEVIMTRAGFDILNEAQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLV 233

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               +         L+++   G P++  +  A      ++Y++++  +RS L YDIDG+V
Sbjct: 234 ENEQQPLGTTHSARLKQLSDWGLPLSKELEVAQGAKECLTYFHKIGELRSQLSYDIDGVV 293

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           +KVD+ ++Q+ LG  AR+PRW I+HKFA ++  + LLD++ Q+GRTG +TPVARL P  +
Sbjct: 294 FKVDDIAMQQTLGFVARAPRWAIAHKFAAQEEMSTLLDVEFQVGRTGAITPVARLAPTFV 353

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN+D I  L            I++GD V+++RAG+VIP++V I+ ++R  
Sbjct: 354 GGVTVSNATLHNQDEINRL-----------GIKIGDSVIIRRAGDVIPQIVAIVADKRPD 402

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+   FP  CP+C S V +      G+ VA  RCTGGL C AQ+ E +KHF SR A +I
Sbjct: 403 DAKDILFPESCPVCSSAVEK----LEGEAVA--RCTGGLYCKAQRKEAMKHFASRKALDI 456

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG + ++    ++     ++ PAD F L     +S  ++      G+ S  NL +S+ 
Sbjct: 457 DGLGDKLIEQLVDAD----MVKSPADFFALDIAPLSSMERM------GEKSAVNLVNSLG 506

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +  +L +F++SLGIR VG   A++LA ++L+     Q           D  +L  V  
Sbjct: 507 KSKKTTLAKFLYSLGIREVGEATAQNLALHFLTLDAIEQA----------DLDALQAVSD 556

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661
           VG I+AQ +V F++   N+  + A L+E      + EK    E  +  +  V TGTL  +
Sbjct: 557 VGIIVAQHVVNFFKEEHNLEVISA-LQEAGVHWPKIEKIAVDELPLAGQVYVLTGTLNVM 615

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R++A+  +  LGA VS  +S KTD ++ G+  GSKL KAQ LGVK+MNE++ L +  + 
Sbjct: 616 DRNQAKAKLQSLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDEMLAMFAEL 675

Query: 722 N 722
           +
Sbjct: 676 D 676


>gi|148259769|ref|YP_001233896.1| DNA ligase, NAD-dependent [Acidiphilium cryptum JF-5]
 gi|166215383|sp|A5FWJ5|DNLJ_ACICJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146401450|gb|ABQ29977.1| DNA ligase, NAD-dependent [Acidiphilium cryptum JF-5]
          Length = 682

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 269/700 (38%), Positives = 407/700 (58%), Gaps = 44/700 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  L+ L + ++  D  YY+   PI+ D+ YDAL+R  +++  A PDLA +      L++
Sbjct: 15  KARLAELVERLAAADAAYYRDDAPIMDDAAYDALRREAESLRAAHPDLAAA------LDQ 68

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   + +  KV H +P LSL+ ++   D  +F   I RF        + F  EPKIDG 
Sbjct: 69  VGAAPSGAFGKVRHRLPMLSLDNVFEPADFVEFCASIRRFL-GLGAAPLAFVAEPKIDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE  +FV  A RGDG  GEDV+  +R +  +P  L  + P+ IE+RGEVY++K D
Sbjct: 128 SISLTYENRRFVRGATRGDGTEGEDVTENLRTLRELPATLPDDAPDFIEIRGEVYMTKTD 187

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F+ LN        + +ANPRNAA+G LR+L+P    +R L+ F +  G  S+   +  ++
Sbjct: 188 FITLNQGQA----RQFANPRNAAAGSLRQLDPAVTASRRLSLFAYARGAASQAVGETHWD 243

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +R  GFPVN    + +   G   +   +   R+ L YDIDG+VYK+D+ +LQ++LG
Sbjct: 244 YLAILRRWGFPVNPLAERVSE-AGAEPFQRSIGERRAGLDYDIDGVVYKIDDLALQERLG 302

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              R+PRW ++ KF  ++A T LL IDIQ+GRTG LTP ARL+PVN+GG L+++ATLHNE
Sbjct: 303 FAGRAPRWAVAWKFPAERALTTLLGIDIQVGRTGALTPRARLDPVNVGGVLVSHATLHNE 362

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +D+R+GD V ++RAG+VIP+++  +   R  D+ PF FP  CP+
Sbjct: 363 DEI-----------ARKDVRIGDTVELQRAGDVIPQILRALPERRPADSVPFVFPDHCPV 411

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  +R      G++V   RCTGGL+C AQ +ERL HF SR AF+IEG+G++ +  F  
Sbjct: 412 CGALAIR----PAGEVV--RRCTGGLSCPAQVVERLIHFCSRLAFDIEGMGEKTVQEFHG 465

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +  PADIFTL+ R+      I  + G+G+VS   L  +I+ RR ISL RFI++
Sbjct: 466 ----LGWLESPADIFTLRDRE----AAIAALEGWGEVSARKLIAAIDARRRISLARFIYA 517

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G + A+ LA++Y SY  + +++       +D  L L  +  +G  IA+ +  F+
Sbjct: 518 LGIRRIGEQNAKLLARHYSSYAVWRRQMEEAGVIGSDARLELGSISGIGPSIAEELAGFF 577

Query: 617 QNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
             P N      LL  + P  +I          +  K +VFTGTL+ + R +A+     LG
Sbjct: 578 AEPHN----RDLLDRLVPMLTIEDEVAAAGGALAGKTIVFTGTLESLTRPEAKARAEALG 633

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           A V+  +S+KTD ++VG + GSK  KA  LGV +++E +F
Sbjct: 634 ARVTESVSKKTDFVVVGADAGSKAAKAASLGVTVLSEAEF 673


>gi|312796238|ref|YP_004029160.1| NAD-dependent DNA ligase [Burkholderia rhizoxinica HKI 454]
 gi|312168013|emb|CBW75016.1| NAD-dependent DNA ligase (EC 6.5.1.2) [Burkholderia rhizoxinica HKI
           454]
          Length = 681

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 267/717 (37%), Positives = 409/717 (57%), Gaps = 58/717 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++  +  + L  E+   +  YY   +P I D+EYD L +  + I    PDL     P+
Sbjct: 9   SADRPAERAAWLRTELDRANHAYYVLDRPEIPDAEYDKLFKELEQIEADHPDLI---TPD 65

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG +      + H +P LSL   +   D+  F  R+    Q  D   + +  E 
Sbjct: 66  SPTQRVGGAVAEGFAPIVHDVPMLSLNNGFEDSDVDAFDKRVSDVLQHGD---VEYACEL 122

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191
           K DG  I++RYE G+FV A+ RGDG +GEDV+A +R I ++P  L+ N +P++I+VRGEV
Sbjct: 123 KFDGLAISLRYENGRFVQASTRGDGTTGEDVTANVRTIRSLPLTLNGNAVPKVIDVRGEV 182

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
            + K DF  LN      G++ +ANPRNAA+G LR+L+ + IT  R L+FF +G+G    +
Sbjct: 183 LMFKRDFERLNARQREAGQREFANPRNAAAGSLRQLD-SRITAKRPLSFFAYGIGVLDGV 241

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                   +L     +G PVN          G++ ++  + + R++LPYDIDG+VYKV+ 
Sbjct: 242 PMPDTHSALLDWYVNMGLPVNKERAVVRGAAGLLVFFRGVGARRASLPYDIDGVVYKVNR 301

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q +LG  +R+PR+ ++HKF  ++A TRLL I++Q+GRTG +TPVARLEP+ +GGA +
Sbjct: 302 RDEQDRLGFVSRAPRFALAHKFPAEEALTRLLAIEVQVGRTGAITPVARLEPIFVGGATV 361

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHNED ++            +DI +GD V+V+RAG+VIP+VV  I   R  DA+PF
Sbjct: 362 TNATLHNEDEVR-----------RKDILIGDTVIVRRAGDVIPEVVGAIKERRPVDARPF 410

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P+ CP+C S + R  +       A  RCTGGL C+AQ+ + L HF  R A +I+GLG+
Sbjct: 411 TMPTHCPVCGSAIERLPDE------AIARCTGGLVCAAQRKQALWHFAQRRALDIDGLGE 464

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D   +       IR PAD+F+L          +  +  F D S  NL DS+ + R+ 
Sbjct: 465 KIIDQLVEQS----LIRTPADLFSL------GFATVAQLDRFADKSAQNLIDSLERARHT 514

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIRHVG   AR LA+++ S       +N +I  + +   +L+ V  VG ++
Sbjct: 515 TLPRFIYALGIRHVGEATARDLARHFGS-------LNALIDASEE---ALLEVNDVGPVV 564

Query: 609 AQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           A+AI  F+  P N   +E L        E  P+     +  +  +    +V TGTL  + 
Sbjct: 565 AEAIRHFFSEPHNRMVIEQLRAAGVQWPEGPPA----PRKPAGPLAGMTVVLTGTLPTLS 620

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R  A+E +   GA V+  +S+KT+ ++ G + GSKL KA++LG+ I++EE    LL+
Sbjct: 621 REAAKERLEAAGAKVAGSVSKKTNYVVAGADAGSKLTKAEELGIPIVDEEGMRRLLE 677


>gi|332290231|ref|YP_004421083.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
 gi|330433127|gb|AEC18186.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
          Length = 671

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 263/714 (36%), Positives = 403/714 (56%), Gaps = 51/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ +  L  ++ YH+  Y+    P+I D+EYD +  +   +    P+L   + P  
Sbjct: 1   MDDLQQHIEQLRNDLRYHEYQYHVLDNPVIPDAEYDRMMNQLKRLEAEHPELITDDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G +      ++ H +P LSL+  ++ E+   FI RI        D    F  EPK
Sbjct: 60  --QRVGAKPANGFQQIRHELPMLSLDNAFSDEEFFAFIRRIEDRLGVLPD-PFTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           +DG  ++I Y  GK   AA RGDG +GED++A IR I  IP  L    P   +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGKLTQAATRGDGVTGEDITANIRTIRNIPLQLRTATPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-F 250
           +  + F  LN+  +  G K +ANPRNAA+G LR+L+P     R L    +G+G    +  
Sbjct: 177 MPHDGFERLNNHALEHGEKTFANPRNAAAGSLRQLDPQVTYHRPLMLNAYGIGIAEGVEL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ LQ ++ +G PVN  +R  N    ++ +Y  +   RS+L YDIDG V KV+   
Sbjct: 237 PNTHYDRLQWLKSIGIPVNKEIRLCNGTTEVLDFYRSIAEKRSSLGYDIDGTVLKVNSIP 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  +R+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQEQLGFISRAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEPVYVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L           DI +GD V+++RAG+VIP+++ ++ + R PDA+P  F
Sbjct: 357 ATLHNGDEIARL-----------DIAIGDTVIIRRAGDVIPQIIGVVHDRRPPDAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S +VR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTRCPVCDSAIVR----IDGEAVA--RCTGGLVCEAQRKEGLKHFVSRKAMDIDGVGDKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRN 547
           ++     E     +  P D+FTL +         E ++G    G+ S      SI K + 
Sbjct: 460 IEQLVDRE----YLHTPVDLFTLSK---------ETLMGLERMGEKSAEKALASIEKAKK 506

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF+F+LGIR VG   AR+LA ++ + +N            N  +  L +V  +G++
Sbjct: 507 TTLARFLFALGIREVGEATARNLANHFHTLENI----------KNATFEQLQQVQDIGEV 556

Query: 608 IAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +A  I+ F+Q   N   VE L+++ V+       +   + ++ K +V TGTL ++ R +A
Sbjct: 557 VANRIILFWQEQHNRNVVEKLIEQGVTWDDVNATEIADNPLKEKTVVLTGTLTQMTRDQA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  + QLG  V+  +S KTD +I GDN GSKL+KA+ LGVK++ E+QFL L+ Q
Sbjct: 617 KALLLQLGCKVAGSVSSKTDFVIAGDNAGSKLQKAESLGVKVLTEQQFLDLIPQ 670


>gi|294635487|ref|ZP_06713972.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
 gi|291091145|gb|EFE23706.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
          Length = 675

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 263/718 (36%), Positives = 416/718 (57%), Gaps = 60/718 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +IEQ   +L  L   + +H+  YY   +P + D+EYD L  +  A+   +P L  ++ P+
Sbjct: 4   TIEQ---QLEQLRAALRHHEYQYYVLDEPQVTDAEYDRLMMQLKALESDYPQLVTADSPS 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GG    +  +V H +P LSL+ +++ E  R F  R++   + K D ++ F  E 
Sbjct: 61  ---QRVGGAPLAAFGQVHHEVPMLSLDNVFDEESYRAFDKRLHE--RLKSDAALTFCCEL 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  +++ YE+G  V AA RGDG +GED+++ ++ I  IP R+   +IP+ IEVRGEV
Sbjct: 116 KLDGLAVSLLYEQGVLVRAATRGDGSTGEDITSNVKTIRAIPLRLQGEDIPDRIEVRGEV 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK-TSEI 249
           ++ +  F A+N+E    G K +ANPRNAA+G LR+L+P    R  L F+ +G G      
Sbjct: 176 FMPQAGFEAMNEEARRRGGKIFANPRNAAAGSLRQLDPRITARRPLTFYCYGAGLLEGGT 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                Y+ LQ+ +  G PV+  V++ +    +++YY + +  R TL +DIDG+V KVD+ 
Sbjct: 236 LPGSHYQCLQRFKSWGLPVSERVKRCHGSDEVLAYYRQTEQDRPTLGFDIDGVVIKVDDI 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ LG  AR+PRW  + KF  ++  T+L  ++ Q+GRTG +TPVARLEPV + G  ++
Sbjct: 296 ATQEALGFVARAPRWATAFKFPAQEQMTQLNGVEFQVGRTGAITPVARLEPVQVAGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD V+V+RAG+VIP+VV ++ ++R  DA    
Sbjct: 356 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVESQRPADATEIL 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RC+GGL C+AQ+ E LKHFVSR A ++EG+G +
Sbjct: 405 FPTHCPVCGSEVER----IEGEAVA--RCSGGLICAAQRKESLKHFVSRRAMDVEGMGDK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   + E     +  PAD++ L      S  K+  +   G  S   L  ++++ R+ +
Sbjct: 459 VIEQLVERE----YVTTPADLYRL------SAGKLTGLERMGPKSANKLIAALDRSRSTT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+F+LGIR VG   A +LA ++           ++ A    D  SL  VP VG+++A
Sbjct: 509 LARFLFALGIREVGEATAANLASHF----------GSLSALRGADLESLKSVPEVGEVVA 558

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----SEIEN----KKLVFTGTLQK 660
           + I  F     N   ++ L   +S  IG H  +V+     +EI++    K +V TG+L  
Sbjct: 559 RHIRHFLSEAHNCQVIDEL---ISAEIGIHWPDVTPALQAAEIDSPFAGKTVVLTGSLSV 615

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R +A++ +  LGA VS  +S+KTD++I G+  GSKL KA  LG+ +++E Q L +L
Sbjct: 616 LSRDEAKDRLVALGAKVSGSVSKKTDLVIAGEAAGSKLVKANTLGITVIDEAQLLQML 673


>gi|148284934|ref|YP_001249024.1| NAD-dependent DNA ligase LigA [Orientia tsutsugamushi str. Boryong]
 gi|166216222|sp|A5CEY0|DNLJ_ORITB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146740373|emb|CAM80812.1| NAD-dependent DNA ligase [Orientia tsutsugamushi str. Boryong]
          Length = 698

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 263/720 (36%), Positives = 424/720 (58%), Gaps = 36/720 (5%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I IE L+ + A+K +  L  E+  +D  YY  + P++ D++YD LK   + I   FP LA
Sbjct: 9   INIEQLTSDHAKKIVDFLALELQKYDQAYYSDNNPLVTDAQYDVLKNLNNKIVAKFPHLA 68

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              D +    K+G   +    KV H  P LSL   + +ED+  FIT+I  F   K D+  
Sbjct: 69  LVNDHS---KKVGFTPSAQFSKVVHLKPMLSLANGFCVEDISNFITKIQNFL--KIDHCP 123

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
               E KIDG     RYE G    A+ RGDG  GE+++  ++ I + P+ L +   ++ E
Sbjct: 124 KIVCEYKIDGLSFNARYEYGVLTLASTRGDGQIGENITENLKTIQSFPQTLPIT-DKVFE 182

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGE+YI+ NDF  LN +   +G+  ++NPRNAA+G +R+L+P     R L +FV+ LG+
Sbjct: 183 VRGEIYITNNDFRVLNIQQQKLGKALFSNPRNAAAGSIRQLDPAITAQRPLKYFVYALGE 242

Query: 246 -TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            T+  FA  Q+E+LQK+  L F VN     ++  H ++ +YN + + R+ L ++IDG+VY
Sbjct: 243 VTNHHFASTQFELLQKLSQLKFSVNTDYILSDNLHSMIEFYNNVATERNNLAFEIDGVVY 302

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++F+LQ++LG  + SPR+ I++KF      T++ +I +Q+G+TG +TPVA L P+NI 
Sbjct: 303 KVNDFALQERLGATSTSPRFAIAYKFPALIGRTKITNITLQVGKTGAVTPVALLIPINIA 362

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  I+ ATLHN+  I+            +DIR+GD V + RAG+VIPK+  + ++ R  D
Sbjct: 363 GVTISRATLHNKQEIE-----------SKDIRIGDYVFLHRAGDVIPKINGVDLSAR--D 409

Query: 425 AQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
           AQ    F FP+ CP C   +V +     G+ VA  RC   LAC AQ  ER+ HFVS+DA 
Sbjct: 410 AQSSTRFIFPATCPSCNQNLVVN----EGETVA--RCGNSLACPAQIYERICHFVSKDAL 463

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ-TSTTKIENILGFGDVSVTNLYD 540
           NI+GLG+Q++ F     D  + + I  DIF L+   +  S+ K+E+I G+G  SV  L+ 
Sbjct: 464 NIDGLGRQRIRFLL---DNKYIVNI-VDIFLLEENNKLLSSNKLEDIAGWGIKSVNKLFK 519

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +IN+ +N+ L+RFI++L ++HVG   A+ LAK + + +NF  +   +  +  + +  L  
Sbjct: 520 NINQAKNVILDRFIYALAVKHVGKYSAKLLAKEFKTAKNFIDQSLKLANNVTEIYEKLCN 579

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G   A  + +F+    N+  +  L+  ++    ++  + +  + N+ +VFTGT   
Sbjct: 580 IEGLGVKTADQLKQFFMVSANVNLITKLVNILTIQDWQYHGD-NLLLSNQTIVFTGTFAT 638

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R + +    +LGA V   +S  TD+++VG+  G+KL+KAQQLG+KI+NEE+++ ++ +
Sbjct: 639 VSRSEIKVQAEKLGAKVGTQVSNNTDLLVVGNKAGNKLQKAQQLGIKIINEEEWIKMVNE 698


>gi|109898096|ref|YP_661351.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c]
 gi|122972028|sp|Q15UZ1|DNLJ_PSEA6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|109700377|gb|ABG40297.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c]
          Length = 677

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 265/715 (37%), Positives = 409/715 (57%), Gaps = 53/715 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ALS  Q   ++ +   E +Y    YY    P + D+EYD L R    I +  PDL RS  
Sbjct: 4   ALSPAQRLTQIINTINEYNYQ---YYVQDNPSVPDAEYDRLMRELLDIENNHPDL-RS-- 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  K+GG    +  +V H +P LSL+  ++ +D++ F  RI    + K  + I F+ 
Sbjct: 58  PDSPSQKVGGAALSAFEQVEHEVPMLSLDNAFDEDDMQAFEKRIKD--RLKISSEISFSC 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           EPK+DG  ++I YE G+ V AA RGDG  GE+++  +R I  +P R+   N P  +EVRG
Sbjct: 116 EPKLDGLAVSILYENGQLVRAATRGDGRVGENITTNVRTIANVPLRLRGENFPSRLEVRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---K 245
           EV +++  F+ LN+  I  G+KP+ NPRNAA+G LR+L+P     R L F+ + LG    
Sbjct: 176 EVIMTRAGFVTLNEAQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVEN 235

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             +   +     L ++   G P++  +         ++Y++++  +RS L YDIDG+V+K
Sbjct: 236 EQQPLGETHSSRLAQLSEWGLPLSKELEVTQGATQCLTYFHKIGELRSQLSYDIDGVVFK 295

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD  ++Q++LG  AR+PRW I+HKF  ++  + LLD++ Q+GRTG +TPVARLEP  +GG
Sbjct: 296 VDNIAMQQELGFVARAPRWAIAHKFPAQEEMSTLLDVEFQVGRTGAITPVARLEPTFVGG 355

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHN+D I  L            I++GD V+++RAG+VIP++V I+ ++R  DA
Sbjct: 356 VTVSNATLHNQDEINRL-----------GIKIGDSVIIRRAGDVIPQIVAIVADKRPDDA 404

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +   FP  CP+C S + +      G+ VA  RCTGGL C AQ+ E +KHF SR A +++G
Sbjct: 405 KDIVFPESCPVCDSAIEK----LEGEAVA--RCTGGLYCKAQRKEAMKHFASRKALDVDG 458

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++    +E     ++ PAD F L     +S  ++      G+ S  NL +++ K 
Sbjct: 459 LGDKLIEQLVDAE----MVKSPADFFALDIAPLSSMERM------GEKSAVNLVNALEKS 508

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +L +F++SLGIR VG   A++LA+++L+ +   Q           D  +L  V  VG
Sbjct: 509 KKTTLAKFLYSLGIREVGEATAQNLAQHFLTLEAIEQA----------DLDALQAVSDVG 558

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQR 663
            I+AQ +  F++   N+  + ALL E      + EK    E  +  +  V TGTL  + R
Sbjct: 559 VIVAQHVFNFFKEEHNLEVISALL-EAGVHWPKIEKLALDELPLAGQVYVLTGTLNVMDR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + A+  +  LGA VS  +S KTD ++ G+  GSKL KAQ LGVK+MNE+  L + 
Sbjct: 618 NSAKAKLQSLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDDMLAMF 672


>gi|225630391|ref|YP_002727182.1| DNA ligase [Wolbachia sp. wRi]
 gi|254782311|sp|C0R399|DNLJ_WOLWR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225592372|gb|ACN95391.1| DNA ligase [Wolbachia sp. wRi]
          Length = 662

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 279/694 (40%), Positives = 416/694 (59%), Gaps = 55/694 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L+ +I+YH+  Y+Q +KP I D+EYD LK++   +A   P++  +++       +G   +
Sbjct: 11  LQDQINYHNVLYHQKNKPEISDAEYDELKKK---LAEIEPEIYATQE------SVGAPPD 61

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               KV H  P LSLE  ++ + + KF+++I RF     ++ I    EPKIDG   +  Y
Sbjct: 62  ERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLI---EDKIEILCEPKIDGLSFSAIY 118

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E G+FV AA RGDG  GEDV+  +  I   P+ L   +   +EVRGE+YIS +DFL LN+
Sbjct: 119 EDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-GVQGRLEVRGEIYISNSDFLKLNE 177

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
                    +ANPRNAA+G L++L+     +R L +F + L   +E   K Q E+L K+ 
Sbjct: 178 ------NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAE---KSQSEVLNKLE 228

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
            LGF VN      ++  G++ +YNE+ + R  L YDIDG+VYKV++  LQ +LG   ++P
Sbjct: 229 ALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKAP 288

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           R  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK  
Sbjct: 289 RSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIK-- 346

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     +DIR GD V +KRAG+VIP++V++  + R P+   F FP  CP C S+ V
Sbjct: 347 ---------RKDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSK-V 396

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           R +  +     AA RC    AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+   D   
Sbjct: 397 RQVEGE-----AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFY---DLGL 448

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
             +IP DIFTL+ R       +E   G+G  S+ +L ++I  RR I+L+RFIFSLGIR +
Sbjct: 449 IKQIP-DIFTLEER--LDEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFSLGIRFI 505

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   A  LA YY+SY N+    N++I  ++D+   L+ +  +G  +A+++  F+    NI
Sbjct: 506 GQVAAELLADYYVSYDNW---YNSMIELSSDN-TELVGIDGIGKKVAESLESFFSKEHNI 561

Query: 623 CAVEALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
             +  L    ++ P       + +S + NK +VFTG L  + R +A+     LGA VS+ 
Sbjct: 562 KMLNDLTACLQILPV---SSNSSNSVLNNKIIVFTGKLLAMSRGEAKVRAKTLGAKVSSH 618

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           LS KTD +I G+ PGSK +KA +LGV+I++E+Q+
Sbjct: 619 LSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQW 652


>gi|257095174|ref|YP_003168815.1| NAD-dependent DNA ligase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047698|gb|ACV36886.1| DNA ligase, NAD-dependent [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 675

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 267/707 (37%), Positives = 398/707 (56%), Gaps = 48/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L SL  EI  +D  YY    P I D++YD L R   A+    P+L   + P     ++
Sbjct: 5   ERLHSLRAEIERYDHEYYVLDAPSIADADYDRLFRELQALEAEHPELVSRDSPT---QRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG        VTH+   LSL   +  +++  F  R+        D  + ++ EPK DG  
Sbjct: 62  GGAPLAEFAAVTHATAMLSLNNAFADDEVAAFDRRVREGLAT--DGEVDYSAEPKFDGLA 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           + + Y KG  V  A RGDG +GE+V+A +R + ++P R+ + + P  +EVRGEV + ++D
Sbjct: 120 VGLSYAKGILVCGATRGDGSTGENVTANLRTLRSVPLRLRASDWPAALEVRGEVLMWRSD 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL--GKTSEIFAKGQ 254
           F  LN      G K + NPRNAA+G LR+L+P     R L FF +G+  G+ + + A   
Sbjct: 180 FERLNARQREKGEKEFVNPRNAAAGGLRQLDPRITAQRPLRFFAYGIASGERAGLPATHS 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            ++ Q  R  GFPV    R+     G+++YY +M S R++LPYDIDG+VYK+D+ + Q++
Sbjct: 240 AQLDQLERW-GFPVARERRRVTGLAGLLAYYADMGSRRASLPYDIDGVVYKLDDLAAQER 298

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ ++HKF  ++A T LLDI IQ+GRTG LTPVARL PV +GG  + NATLH
Sbjct: 299 LGFLSRAPRFAVAHKFPAEEAVTELLDISIQVGRTGALTPVARLAPVFVGGVTVNNATLH 358

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I+            +++R+GD V+V+RAG+VIP+VV ++ + R   A+ F  P+ C
Sbjct: 359 NEDEIR-----------RKNVRIGDVVVVRRAGDVIPEVVRVVPDRRPAGAREFVMPTSC 407

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C SRVVR  +       A  RC+GGL C AQ+ + L HF SR A +IEGLG + ++  
Sbjct: 408 PVCGSRVVRSADE------AVARCSGGLYCPAQRKQALLHFASRRALDIEGLGDKLVEQL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             S      +R P D++ L      S  ++       D S  NL  +I + +  +L RFI
Sbjct: 462 VDSA----IVRTPGDLYRLGLLALASLERM------ADKSAGNLLAAIERSKRTTLARFI 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR+VG   AR LA+++ S       ++ ++A + D   SL +VP VG  +AQ+I +
Sbjct: 512 FALGIRNVGEATARELARHFGS-------LDRLLAADED---SLRQVPDVGPTVAQSIRQ 561

Query: 615 FYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F   P N+  +E L    +  S G            +  V TGTL  + R  A+  +   
Sbjct: 562 FCSEPHNLEVIEQLRAAGLVWSEGEPAVPAGGVFAGQVFVLTGTLPSLTREAAKAMIEAA 621

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +S+KT  ++ G   GSKLE+A QLGV++++E Q L LL+Q
Sbjct: 622 GGKVSGSVSKKTSFVVAGAEAGSKLERALQLGVQVIDEGQLLGLLEQ 668


>gi|189184847|ref|YP_001938632.1| NAD-dependent DNA ligase LigA [Orientia tsutsugamushi str. Ikeda]
 gi|254781383|sp|B3CVK1|DNLJ_ORITI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189181618|dbj|BAG41398.1| DNA ligase [Orientia tsutsugamushi str. Ikeda]
          Length = 699

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 261/718 (36%), Positives = 422/718 (58%), Gaps = 32/718 (4%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I IE L+ + A+K +  L  E+  +D  YY  + P++ D++YD LK   + I   FP LA
Sbjct: 9   INIEQLTSDHAKKIVDFLALELQKYDQAYYSDNNPLVTDAQYDVLKNLNNKIVAKFPHLA 68

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              D +    K+G   +    KV H  P LSL   + +ED+  FIT+I  F   K D+  
Sbjct: 69  LVNDHS---KKVGFTPSAQFSKVVHLKPMLSLANGFCVEDISNFITKIQNFL--KIDHCP 123

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
               E KIDG     RYE G    A+ RGDG  GE+++  ++ I + P+ L +   ++ E
Sbjct: 124 KIVCEYKIDGLSFNARYEYGVLTLASTRGDGQIGENITENLKTIQSFPQTLPIT-DKVFE 182

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGE+YI+ NDF  LN +   +G+  ++NPRNAA+G +R+L+P     R L +FV+ LG+
Sbjct: 183 VRGEIYITNNDFRVLNIQQQKLGKALFSNPRNAAAGSIRQLDPAITAQRPLKYFVYALGE 242

Query: 246 -TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            T+  FA  Q+E+LQK+  L F VN     ++  H ++ +YN + + R+ L ++IDG+VY
Sbjct: 243 VTNHHFASTQFELLQKLSQLKFSVNTDYILSDNLHSMIEFYNNVATERNNLAFEIDGVVY 302

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++F+LQ++LG  + SPR+ I++KF      T++ +I +Q+G+TG +TPVA L P+NI 
Sbjct: 303 KVNDFALQERLGATSTSPRFAIAYKFPALIGRTKITNITLQVGKTGAVTPVAWLIPINIA 362

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP- 423
           G  I+ ATLHN+  I+            +DIR+GD V + RAG+VIPK+  + ++ R   
Sbjct: 363 GVTISRATLHNKQEIE-----------SKDIRIGDYVFLHRAGDVIPKINGVDLSARDTQ 411

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            ++ F FP+ CP C   +V +     G+ VA  RC   LAC AQ  ER+ HFVS+DA NI
Sbjct: 412 SSERFIFPTTCPSCNQNLVVN----EGETVA--RCGNSLACQAQIYERICHFVSKDALNI 465

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ-TSTTKIENILGFGDVSVTNLYDSI 542
           +GLGKQ++ F     D  + + I  DIF L+   +   + K+E+I G+G  SV  L+ +I
Sbjct: 466 DGLGKQRIQFLL---DNKYIVNI-VDIFLLEENNKFLYSNKLEDIAGWGIKSVNKLFQNI 521

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N+ +N+ L++FI++L I+HVG   A+ LAK + + +NF  +   +  +  + +  L  + 
Sbjct: 522 NQAKNVILDKFIYALAIKHVGKYSAKLLAKEFKTAKNFINQSLKLANNATEIYEKLRNIE 581

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG   A  + +F+    N+  +  L+  ++    ++  + +  + N+ +VFTGT   + 
Sbjct: 582 GVGVKTADQLKQFFMVSANVNLITKLVNILTIQDWQYHGD-NLLLSNQTIVFTGTFATVS 640

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R + +    +LGA V   +S  TD+++VG+  G+KL+KAQQLG+KI+NEE+++ ++ +
Sbjct: 641 RSEIKVQAEKLGAKVGTQVSNNTDLLVVGNKAGNKLQKAQQLGIKIINEEEWIKMVNE 698


>gi|311278661|ref|YP_003940892.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1]
 gi|308747856|gb|ADO47608.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1]
          Length = 671

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 264/715 (36%), Positives = 414/715 (57%), Gaps = 52/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L++L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MEPIEQQLTALRATLRHHEYLYHVMDAPELPDAEYDRLMRELRELEAKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E   +  +V H IP LSL+ +++ E    F  R+    + K  + + +  E K
Sbjct: 58  PTQRVGAEPLGAFSQVRHEIPMLSLDNVFDEESFLAFNKRVQD--RLKSSDKLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED++A +R I  IP ++   ++P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGLLVRAATRGDGTTGEDITANVRTIRAIPLKLRGDDVPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +NDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A      L++ +  G PV++ V   N+   +++YY +++  R TL +DIDG+V KVD  
Sbjct: 236 PAS-HLGRLRQFKSWGLPVSSRVTLCNSPEEVLAYYRKVEEDRPTLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++
Sbjct: 295 ELQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIE 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A ++EG+G +
Sbjct: 404 FPAHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVEGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  S
Sbjct: 458 IIDQLVEKE----YVLTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKETS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA +Y S       +  +IA + DD   L  VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAHYGS-------LEALIAASIDD---LQTVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   ++ LL E     +P + + E+ + S    K +V TG+L  + R  
Sbjct: 558 THVFNFFAEESNREVIQQLLAEGIHWPAPVVVKAEE-IDSPFAGKTVVLTGSLSLMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L LL +
Sbjct: 617 AKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMLRLLGE 671


>gi|58696662|ref|ZP_00372215.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537163|gb|EAL60267.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 656

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 279/694 (40%), Positives = 416/694 (59%), Gaps = 55/694 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L+ +I+YH+  Y+Q +KP I D+EYD LK++   +A   P++  +++       +G   +
Sbjct: 5   LQDQINYHNVLYHQKNKPEISDAEYDELKKK---LAEIEPEIYATQE------SVGAPPD 55

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               KV H  P LSLE  ++ + + KF+++I RF     ++ I    EPKIDG   +  Y
Sbjct: 56  ERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLI---EDKIEILCEPKIDGLSFSAIY 112

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E G+FV AA RGDG  GEDV+  +  I   P+ L   +   +EVRGE+YIS +DFL LN+
Sbjct: 113 EDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-GVQGRLEVRGEIYISNSDFLKLNE 171

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
                    +ANPRNAA+G L++L+     +R L +F + L   +E   K Q E+L K+ 
Sbjct: 172 ------NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAE---KSQSEVLNKLE 222

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
            LGF VN      ++  G++ +YNE+ + R  L YDIDG+VYKV++  LQ +LG   ++P
Sbjct: 223 ALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKAP 282

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           R  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK  
Sbjct: 283 RSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIK-- 340

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     +DIR GD V +KRAG+VIP++V++  + R P+   F FP  CP C S+ V
Sbjct: 341 ---------RKDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSK-V 390

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           R +  +     AA RC    AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+   D   
Sbjct: 391 RQVEGE-----AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFY---DLGL 442

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
             +IP DIFTL+ R       +E   G+G  S+ +L ++I  RR I+L+RFIFSLGIR +
Sbjct: 443 IKQIP-DIFTLEER--LDEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFSLGIRFI 499

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   A  LA YY+SY N+    N++I  ++D+   L+ +  +G  +A+++  F+    NI
Sbjct: 500 GQVAAELLADYYVSYDNW---YNSMIELSSDN-TELVGIDGIGKKVAESLESFFSKEHNI 555

Query: 623 CAVEALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
             +  L    ++ P       + +S + NK +VFTG L  + R +A+     LGA VS+ 
Sbjct: 556 KMLNDLTACLQILPV---SSNSSNSVLNNKIIVFTGKLLAMSRGEAKVRAKTLGAKVSSH 612

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           LS KTD +I G+ PGSK +KA +LGV+I++E+Q+
Sbjct: 613 LSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQW 646


>gi|322831833|ref|YP_004211860.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602]
 gi|321167034|gb|ADW72733.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602]
          Length = 673

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 261/714 (36%), Positives = 413/714 (57%), Gaps = 58/714 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++S L  ++ +H+  Y+    P + D+EYD L R    +  A P+L  ++ P     ++
Sbjct: 6   EQISQLRTQLRHHEYQYHVLDAPEVPDAEYDRLMRELRELETAHPELVTADSPT---QRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G     +  +V H +P LSL+ +++ E    F  R+    + K   ++ F  E K+DG  
Sbjct: 63  GAAPLSAFEQVRHRVPMLSLDNVFDEESYLAFYKRVQD--RLKTAEALTFCCELKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G+ V AA RGDG +GE+++A +R I  IP R+   NIPE +EVRGEV++ +  
Sbjct: 121 VSLLYENGELVQAATRGDGTTGENITANVRTIRAIPLRLHGDNIPERLEVRGEVFMPQAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQ 254
           F A+NDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+  +  
Sbjct: 181 FEAMNDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL-PRSH 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +  LQ+ +  G PV++ VR       ++++Y ++++ R +L +DIDG+V K+D   +Q+ 
Sbjct: 240 FARLQQFKAWGLPVSDRVRLCTGSEEVLAFYRQVEADRPSLGFDIDGVVVKIDSLDIQET 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW  + KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++NATLH
Sbjct: 300 LGFVARAPRWATAFKFPAQEQITLVKDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            +R+GD V+V+RAG+VIP+VV ++++ER  DA+   FP+ C
Sbjct: 360 NADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVLDERPEDAREVVFPTHC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V R      G+ VA  RCT GL C AQ+ E LKHFVSR A +++G+G + +D  
Sbjct: 409 PVCHSDVER----VEGEAVA--RCTAGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     ++ PAD+F L      +  K+  +   G  S  N+  ++ K +  +L RF+
Sbjct: 463 VEKE----YVKTPADLFRL------TAGKLTGLDRMGPKSAQNVVRALEKAKETTLARFL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA +Y S +          A    D  SL  V  VGD++A+ +V 
Sbjct: 513 YALGIREVGEATAANLAAHYGSVE----------ALKAADIESLKGVQDVGDVVAKHVVN 562

Query: 615 FYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKIQRHKA 666
           F     N   ++ LL   SP I  H         + + S    K +V TG+L  + R  A
Sbjct: 563 FLSEEHNQQVIDELL---SPEINIHWPEVQVIVPEEIDSPFAGKTVVLTGSLSILSRDDA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 620 KDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMIRLLGE 673


>gi|332284990|ref|YP_004416901.1| DNA ligase [Pusillimonas sp. T7-7]
 gi|330428943|gb|AEC20277.1| DNA ligase [Pusillimonas sp. T7-7]
          Length = 698

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 259/725 (35%), Positives = 397/725 (54%), Gaps = 63/725 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A +   +L  EI+ H+  YY    P++ D+ YD L      +    P+L     P  P  
Sbjct: 11  AAQRAETLRAEINEHNHRYYVQDAPVVSDAAYDKLMTELIELEQTHPELI---TPESPTQ 67

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEP 132
           ++G E   S   V H++P  SL   ++ ED+  F  R++           +  + +  E 
Sbjct: 68  RVGAEPLPSFDSVRHAVPMRSLGNAFDAEDIHAFSKRVFDTLHGAGMAGAEEKVQYVAEL 127

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K DG  +++RYE+G+ V AA RGDG +GED+++ IR + ++P  L  + P+++EVRGEV 
Sbjct: 128 KFDGLAVSLRYEEGRLVRAATRGDGQTGEDITSNIRTLRSVPLKLKGDYPQVLEVRGEVL 187

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK------ 245
           +++ DF  LN    A G K + NPRNAA+G LR+L+P     R L F+ +G G+      
Sbjct: 188 MNRQDFEKLNQAQQARGEKVFVNPRNAAAGSLRQLDPRITAKRPLRFYAYGWGEIRIVHD 247

Query: 246 -----------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
                      ++E+  K   +ML  ++ LG PVN+  +      G++ +Y  + S R+ 
Sbjct: 248 GQTELFRQESGSAEMPRKTHAQMLDWLQALGLPVNDSRKLVCGAQGLLDFYEHIGSTRTA 307

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LP+DIDG+VYKVD    Q+ LG  AR+PR+ I+HKF  ++ +TRLL I++Q+GRTG +TP
Sbjct: 308 LPFDIDGVVYKVDSLEAQEVLGYVARAPRFAIAHKFPAQEETTRLLSIEVQVGRTGAITP 367

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARLEPV +GG  +TNATLHNED I+            +D+RVGD V+V+RAG+VIP+V+
Sbjct: 368 VARLEPVFVGGVTVTNATLHNEDEIR-----------RKDVRVGDTVVVRRAGDVIPEVL 416

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +++ R PD   F  P  CP+C S + R  +       A  RCTGGL C+AQ+ + L H
Sbjct: 417 APVLDLRPPDTSLFVMPRQCPVCGSAIERPEDE------AVSRCTGGLFCAAQRKQSLSH 470

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
              R A +IEGLG++ +D    S      ++  AD+FTL   +  +  ++      G  S
Sbjct: 471 AAGRKALDIEGLGEKLVDQLVDS----GRVKSLADLFTLTSDELAAYERM------GRKS 520

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL  ++ K R  SLER +++LGIRHVG   AR LA+++ S       ++ ++A    D
Sbjct: 521 ADNLVAALEKARTPSLERLLYALGIRHVGEATARDLARHFGS-------VDAVMAA---D 570

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLV 653
             +L++V  VG ++A +I+ F+  P N   +  L    V  S           +  K LV
Sbjct: 571 ETALLQVHDVGQVVAASILNFFAEPHNRDVIAQLAAAGVHASAPEQASGSDLRLAGKTLV 630

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGT+    R +A   +   G  VS  +S+KT  ++ G+  GSKL KA +LGV +++E+ 
Sbjct: 631 LTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYVVAGEEAGSKLTKAAELGVPVLDEDG 690

Query: 714 FLFLL 718
              LL
Sbjct: 691 LKALL 695


>gi|251788438|ref|YP_003003159.1| NAD-dependent DNA ligase LigA [Dickeya zeae Ech1591]
 gi|247537059|gb|ACT05680.1| DNA ligase, NAD-dependent [Dickeya zeae Ech1591]
          Length = 682

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 260/717 (36%), Positives = 411/717 (57%), Gaps = 56/717 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +++ AR+ +  L   I +HD  Y+    P ILDSEYD LKR    +    P L  S+ P 
Sbjct: 10  NVDTARRRIKELRILIRHHDIKYHSEDDPEILDSEYDLLKRELSELEIQHPFLVTSDSPT 69

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++G E  ++   + H +P LSL+ ++N +  + F  R+    + K+D  + F  E 
Sbjct: 70  ---QRVGAEPLVAFGTIKHEVPMLSLDNVFNEDGFKAFSKRVSE--RLKNDKELIFCCEL 124

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  +++ YE G    A+ RGDG +GE++++ +R I  IP R+   NIP+ +EVRGEV
Sbjct: 125 KLDGLAVSLLYENGILERASTRGDGTTGENITSNVRTIRAIPLRLEGDNIPQRLEVRGEV 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEI 249
           ++    F ALN+E    G K +ANPRNAA+G LR+L+P    TR L F  +G+G      
Sbjct: 185 FMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRVTATRPLTFLCYGVGLVEGGA 244

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                ++ L + R  G PV++ +R       ++ +Y +++  R  L +DIDG+V KV+E 
Sbjct: 245 LPDTHWQRLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERGALGFDIDGVVIKVNEL 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  AR+PRW ++ KF  ++  T L D++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 305 TLQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVVVS 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +++GDRV V+RAG+VIP++V ++++ER  DA+P  
Sbjct: 365 NATLHNADEIERL-----------GVQIGDRVAVRRAGDVIPQIVSVVLSERPADARPVV 413

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A ++EG+G +
Sbjct: 414 FPTHCPVCGSDVER----VEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVEGMGDK 467

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     E     ++ PAD+  L     T   ++      G  S  NL +++NK ++ +
Sbjct: 468 IIDQLVDKE----YVKTPADLLRLDIGILTRLDRM------GPKSAQNLVNALNKAKSTT 517

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA ++ + +          A    D  +L +V  VG ++A
Sbjct: 518 FARFLYALGIRDVGEATAANLAAHFGTLE----------ALQAADLDALQQVQDVGIVVA 567

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--------VSSEIENKKLVFTGTLQKI 661
             +  F     N   ++ L+ +    +G H  +         +S    K +V TG+L  +
Sbjct: 568 THVRNFLDEAHNQQVIQELIGD---DVGLHWPDPVVVDVEASTSPFAGKTVVLTGSLSLL 624

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 625 SRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLTKAQELGIDVIDEAEMMRLL 681


>gi|330445331|ref|ZP_08308983.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489522|dbj|GAA03480.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 671

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/709 (35%), Positives = 410/709 (57%), Gaps = 49/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++EL +L +++ YH   YY    P I D+EYD + ++   I    P+    + P+    +
Sbjct: 6   QQELFTLREQLDYHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTVDSPS---QR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG       +V H I  LSL+  +N +DLR F  R+    + +  + + +  EPK+DG 
Sbjct: 63  VGGTALEGFTQVKHEIAMLSLDNAFNDDDLRAFQKRLQD--RLRSGSELNYCCEPKLDGL 120

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ YE G  V AA RGDG +GE+++  +R I  IP ++   + P  +EVRGEV++ K 
Sbjct: 121 AVSLMYENGVLVQAATRGDGATGENITHNVRTIRAIPLKLQGTDWPARLEVRGEVFMPKK 180

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQ 254
            F ALN++ +  G K +ANPRNAA+G LR+L+P    TR L+F+ + +G       A+ Q
Sbjct: 181 GFEALNEKALKKGEKTFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVEGRELAETQ 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE L +++  G P+   +R+ ++   ++ Y+  +   R +L Y+IDG+V KVD    Q+Q
Sbjct: 241 YERLCQLKAWGLPMCPEIRKVDSIEEVIVYHQSIGEKRQSLGYEIDGVVIKVDGIDTQQQ 300

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NATLH
Sbjct: 301 LGFVARAPRWAIAYKFPAQEEMTVLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH 360

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D ++ L            + +GD V+++RAG+VIP++  ++ + R   AQ   FP+ C
Sbjct: 361 NADEVERL-----------GVMIGDTVIIRRAGDVIPQIASVVESRRPESAQAIVFPTEC 409

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+CQS++ R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G G++ ++  
Sbjct: 410 PVCQSKIER----IEGEAVA--RCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQL 463

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     +  PAD+F        S  ++  +   G  S   L D++   +  +L RFI
Sbjct: 464 VDRE----MVATPADLFKF------SAGEVTVLERMGPKSAQKLVDALKASKLTTLPRFI 513

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +SLGIR VG   A +LA Y+ + +  +Q               LI VP VGD++A  I  
Sbjct: 514 YSLGIREVGEATAANLANYFETLEAISQATKE----------QLIEVPDVGDVVAAHIFN 563

Query: 615 FYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           F++   N+  V+  L+EV    P I + E+ +   +E K +V TG+L ++ R  A+  + 
Sbjct: 564 FFREEHNMAVVKD-LQEVGIHWPEIEKPEEGIELPLEGKTVVLTGSLSQLTRSDAKAALQ 622

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +LGA V+  +S+KTD+++ G+  GSKL KAQ+L ++I +E++ + L+ +
Sbjct: 623 KLGAKVTGSVSKKTDLLVAGEAAGSKLAKAQELDIEIWDEQKLVDLMSK 671


>gi|271501855|ref|YP_003334881.1| DNA ligase [Dickeya dadantii Ech586]
 gi|270345410|gb|ACZ78175.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech586]
          Length = 683

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 261/716 (36%), Positives = 407/716 (56%), Gaps = 56/716 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I     ++ +L  ++ YH+  Y+    P I D+EYD L      +  A P+L     P+ 
Sbjct: 12  IAAVAAQVEALRAQLRYHEYKYHVEDAPEIPDAEYDTLMNTLKVLEQAHPELVT---PDS 68

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +   V H +P LSL+ +++      F  RI    + K+D  + F  E K
Sbjct: 69  PTQRVGAAPLDAFDTVAHDVPMLSLDNVFDEASFLAFCKRIND--RLKNDAELTFCCELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE+G  V AA RGDG +GE+++A IR I  IP R+   NIP  +EVRGEV+
Sbjct: 127 LDGLAVSLLYEQGVLVRAATRGDGTTGENITANIRTIGAIPLRLHGDNIPTRLEVRGEVF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIF 250
           +    F ALN+E    G K +ANPRNAA+G LR+L+P    TR L F  +G+G       
Sbjct: 187 MKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTFLCYGVGLVEGGTL 246

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               ++ L + R  G PV++ +R       ++++Y +++  R TL +DIDG+V KV+E +
Sbjct: 247 PDTHWQRLMQFRDWGLPVSDRIRLCTGSEAVLNFYRQVEQERETLGFDIDGVVIKVNELA 306

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW ++ KF  ++  T L D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 307 LQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVVVSN 366

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            I++GDRV V+RAG+VIP++V ++++ER  DA+P  F
Sbjct: 367 ATLHNADEIERL-----------GIQIGDRVAVRRAGDVIPQIVSVVLSERPSDARPIVF 415

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R      G+ V   RCTGGL C+AQ+ E LKHFVSR A ++EG+G + 
Sbjct: 416 PEHCPVCGSELER----VEGEAVT--RCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKI 469

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+  L     T   ++      G  S  NL  +++K ++ + 
Sbjct: 470 IDQLVEKE----YVKTPADLLRLDIGILTRLDRM------GPKSAQNLVSALDKAKSTTF 519

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++            + A    D  +L +VP VG ++A 
Sbjct: 520 ARFLYALGIRDVGEATAANLASHF----------GTLDALQAADLEALQQVPDVGIVVAT 569

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--------VSSEIENKKLVFTGTLQKIQ 662
            +  F     N   ++AL   +S  +G H  +         +S    K +V TG+L ++ 
Sbjct: 570 HVRHFLDEAHNQQVIQAL---ISDEVGIHWPDPVRVDVEASTSPFAGKTVVLTGSLSQLS 626

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 627 RDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMMRLL 682


>gi|53803401|ref|YP_114852.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath]
 gi|81681278|sp|Q604U8|DNLJ_METCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53757162|gb|AAU91453.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath]
          Length = 673

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 263/720 (36%), Positives = 403/720 (55%), Gaps = 60/720 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + A  +E+ARK    L +EI +H+  YY+   P+I D+EYD L     AI   +P+L   
Sbjct: 3   VPAEVVEKARK----LREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYPELV-- 56

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  ++G     +  +V H +P LSLE  ++ EDL  F  R+ +   +   +++ +
Sbjct: 57  -TPDSPTQRVGAPPVEAFTEVRHEVPMLSLENAFSEEDLTAFDRRVRKELSR---DTLEY 112

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187
             EPK+DG  + + Y+ G  V AA RGDG  GEDV+  +RA+  IP R+   + P+  E 
Sbjct: 113 VAEPKLDGLAVNLLYQDGVLVRAATRGDGEVGEDVTHNVRAVRAIPLRLKGEDFPDRFEA 172

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGEV++ K  FLALN+     G K + NPRNAA+G LR+L+     +R L+F+ +G+G  
Sbjct: 173 RGEVFMPKRGFLALNERARRSGEKTFVNPRNAAAGSLRQLDARVTASRPLSFYAYGIGAF 232

Query: 247 SEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +      Q+E+L+ ++  G PV+   R      G + YY  +   R  LPYDIDG+VYK
Sbjct: 233 PDARLPATQHELLESLQRWGLPVSPEYRVVRGAAGCLEYYRSLGERRHDLPYDIDGVVYK 292

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   Q  LG  +R+PRW I+HKF  ++A TR++ ID+Q+GRTG+LTPVARLEPV +GG
Sbjct: 293 VDDLKAQAGLGFVSRAPRWAIAHKFPAEEARTRVVGIDVQVGRTGVLTPVARLEPVFVGG 352

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +TNATLHN D I+            +D+R GD V+V+RAG+VIP++V ++   R P A
Sbjct: 353 VTVTNATLHNADEIR-----------RKDVRPGDTVIVRRAGDVIPEIVRVVPELRKPGA 401

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF  P  CP C S V      + G+++A  RC+GGL C AQ  E +KHF SR A +IEG
Sbjct: 402 EPFRMPEVCPECGSAV----EAEPGEVLA--RCSGGLYCPAQHKESIKHFASRRAMDIEG 455

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + +D     +     I   AD++ L         ++  +   G+ S  NL  ++ + 
Sbjct: 456 LGDKLVDQLVGRK----LIATVADLYRLD------LDRLAGLDRMGEKSAANLLAALERS 505

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +L RF+++LGIR VG   A+ L++++ S +   +               L+ V  VG
Sbjct: 506 KRTTLARFLYALGIRDVGEVTAKVLSEHFGSLEALMEATEE----------ELLAVADVG 555

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSS----EIENKKLVFTGTLQK 660
            ++++ I  F+  P N   +  LL     + G   EK   +     ++    V TGTL  
Sbjct: 556 PVVSRHIRLFFAQPHNREVISQLL-----ACGVSWEKPAPAPRKLPLQGLVFVLTGTLAS 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R +A+  +  LGA  +  +SR T  ++ G  PGSKL+KA +LGV +++E+ FL LL++
Sbjct: 611 MSRDEARARLEALGAKCTGSVSRNTSFVVAGSEPGSKLDKASELGVPVLDEKGFLDLLER 670


>gi|302382738|ref|YP_003818561.1| DNA ligase, NAD-dependent [Brevundimonas subvibrioides ATCC 15264]
 gi|302193366|gb|ADL00938.1| DNA ligase, NAD-dependent [Brevundimonas subvibrioides ATCC 15264]
          Length = 777

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 287/760 (37%), Positives = 398/760 (52%), Gaps = 108/760 (14%)

Query: 41  PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100
           P + D++YDA+K R  AI   FP L RS+ P+    K+G  ++    +V H +P LSL+ 
Sbjct: 42  PTVSDADYDAMKARNLAIETRFPALVRSDSPS---LKVGAPVSTQFTEVRHGVPMLSLDN 98

Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160
            +   D+  F+ RI RF     D  + FT EPKIDG    +RYE G  V  A RGDG +G
Sbjct: 99  AFEAADVTDFVARIRRFLNLPADEVVAFTAEPKIDGLSANLRYEDGVLVQGATRGDGRAG 158

Query: 161 EDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNA 219
           ED++A ++ I  IP R+     P  IEVRGEVY   + F A N E  A GR+ YANPRN 
Sbjct: 159 EDITANLKTIADIPHRLNGKGWPARIEVRGEVYAPNDAFAAFNAEAEAAGRRTYANPRNF 218

Query: 220 ASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278
           A+G LR+++PT    R L FF +  G+TSE FA+ Q   L+     GFPVN    +    
Sbjct: 219 AAGSLRQIDPTVTAARPLRFFAYAWGETSEPFAETQAGALEAFEAWGFPVNPRSVRVEGS 278

Query: 279 HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTR 338
            G++  Y  +++ R+ L YDIDG+VYKVD    Q +LG  +RSPRW I+HKF  +QA+T 
Sbjct: 279 DGLIDVYRGLETDRAGLGYDIDGVVYKVDRLDWQTRLGFVSRSPRWAIAHKFPAQQATTV 338

Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398
           L  IDIQ+GRTG LTPVARL PV +GG ++ NATLHNED I             +D+R+G
Sbjct: 339 LEGIDIQVGRTGSLTPVARLAPVTVGGVVVRNATLHNEDEI-----------ARKDVRIG 387

Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           D V+++RAG+VIP++V +++++R  DA P+ FP+ CP+C S  VR+ +          RC
Sbjct: 388 DTVVLQRAGDVIPQIVSVVLDKRPADALPYVFPTHCPVCGSEAVREGDD------VRRRC 441

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR-RQ 517
           TGGL CSAQ +ERLKHFVSR AF+IEGLG++QL  F    D  + I  PADIF L R   
Sbjct: 442 TGGLICSAQLIERLKHFVSRRAFDIEGLGEKQLSAF---HDRGW-IHEPADIFRLARDAD 497

Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
           +    + E+  G+G+ SV NL   I+ RR ISLER IF LGIR +G + +  LA+++  +
Sbjct: 498 KLDALRAED--GYGETSVRNLVAGIDARRVISLERLIFGLGIRDIGDQTSLLLARHFGDW 555

Query: 578 QNF-AQEINNIIAHNNDDWLSLIR----VPLVGDIIAQA--------------------- 611
            +F A  +       + +W  L       P    ++A A                     
Sbjct: 556 ASFHAAAMEAASGIPSPEWTQLAEGHGVSPRTLSVMAAATLSPADPWPEAPIDQKLALAF 615

Query: 612 --------------------IVEFYQ-----NPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                               IVE  +      P       A +  V P   R   +   E
Sbjct: 616 PGIAAPARRALGPLAVDWAGIVELARIAREDGPSMTLGEIAGIAGVGPVAARAVADFFHE 675

Query: 647 IENKKLVFT-----GTLQKIQRHKAQEYVTQLGAVVSAILSR------------------ 683
             N+ +V        T+Q  +R K+   VT    V +  L R                  
Sbjct: 676 PHNQAVVAALLAELTTVQDAERPKSDTAVTGKTVVFTGALERFTRDEAKARAESLGAKVS 735

Query: 684 -----KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
                KTD ++ G   GSKL  AQ+ GV ++ E+++L L+
Sbjct: 736 GSVSKKTDYLVAGPGAGSKLADAQKHGVAVLTEDEWLALI 775


>gi|322513636|ref|ZP_08066733.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
 gi|322120561|gb|EFX92462.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
          Length = 681

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/710 (36%), Positives = 415/710 (58%), Gaps = 58/710 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   ++ P     ++G
Sbjct: 17  QLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH IP LSL+  ++ EDL  F+ R+  +   ++  S+ F  EPK+DG  +
Sbjct: 74  AKPLDGFAQVTHEIPMLSLDNAFSDEDLDSFLRRMESYI-SENPLSLAFCCEPKLDGLAV 132

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED+++ IR I  IP  L++ N P  +EVRGEV++ +  F
Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254
             LN+  +    K +ANPRNAA+G LR+L+P  ITR     LN +  G+ ++ +      
Sbjct: 193 EELNERALEKSEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPATH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R       ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLVTGHEQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAEKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     +  PAD+F L     T+  +++ +   G  S  N  +SI K +N +L RF+
Sbjct: 475 MDRE----LVHTPADLFKL---DHTTLMRLDRM---GKKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++          +N+ A     +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLEAIRMATFEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668
           F+Q P N+  VE L+ +     G + ++V       + ++ K +V TGTL ++ R +A+ 
Sbjct: 575 FWQEPHNVAVVEDLIAQ-----GVYWQDVVQVEIADNPLKGKNVVLTGTLTQLTRDQAKA 629

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +   G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++ + L+
Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQELVDLM 679


>gi|317049042|ref|YP_004116690.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b]
 gi|316950659|gb|ADU70134.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b]
          Length = 672

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 259/717 (36%), Positives = 419/717 (58%), Gaps = 59/717 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++++++L   + +H+  Y+    P + D+EYD L  +   +  A P+L     P+ 
Sbjct: 1   MKSVQEQITALRTTLRHHEYLYHVMDTPEVPDAEYDRLMAQLRELESAHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+  ++      F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLAAFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSSDD--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++A +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLVSAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           ++++ F  LN++    G K +ANPRNAA+G LR+L+P     R L FF +GLG  +  E+
Sbjct: 176 MTESGFEKLNEDARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A      LQ+ +  G PV++ +R AN    ++++Y E++  R TL +DIDG+V KVD  
Sbjct: 236 PAS-HLGRLQQFKAWGLPVSDRIRLANNADDVLAFYREVEEARPTLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVVVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  D +   
Sbjct: 355 NATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPEDTREIV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FPS CP+C S V R      G+ V   RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPSHCPVCGSDVER----VEGEAVT--RCTGGLICGAQRKEALKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     ++ PAD+F L      +  K+  +   G  S  N+ D++ K +  +
Sbjct: 458 IIDQLVEKE----YVKTPADLFRL------TAGKLTGLDRMGPKSAQNVVDALEKAKFTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+++LGIR VG   A +LA ++        E+  ++   + D  +LI V  VG ++A
Sbjct: 508 LPRFLYALGIREVGEATAANLANHF-------GELEKVM---DADLDALIAVQDVGQVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIEN----KKLVFTGTLQKI 661
             +  F     N      +++E++  +G H   V    ++EI++    K +V TG+L ++
Sbjct: 558 SHVRNFMDEESN----REVIRELTQEMGVHWPQVEVVNAAEIDSPFAGKTVVLTGSLSQM 613

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R  A+  +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 NRDDAKARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 670


>gi|292491548|ref|YP_003526987.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
 gi|291580143|gb|ADE14600.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
          Length = 675

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 264/710 (37%), Positives = 402/710 (56%), Gaps = 49/710 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QAR+ + +L + I+ ++  YY    P++ DSEYD L R    +   +P+L     P+ P 
Sbjct: 6   QARERVETLRKLINDYNYNYYVLDSPVVPDSEYDRLMRELQNLEAQYPELVV---PDSPT 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G E   +L +V H IP LSL   ++ E+L  F  R+    ++     + +  EPK+D
Sbjct: 63  QRVGAEPLKALGEVKHEIPMLSLNNAFSEEELADFHRRVK---ERLGIEQVEYAAEPKLD 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  +++ Y++G  V  A RGDG +GEDV+  +R IPT+   L  + IP ++EVRGEVY+ 
Sbjct: 120 GLAVSLLYQEGILVQGATRGDGVTGEDVTHNVRTIPTVSLHLRGDKIPSLLEVRGEVYMP 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAK 252
           K  F  LN E +A G K + NPRNAA+G LR+L+P    +R L  F +G+GK  +    +
Sbjct: 180 KEGFERLNREHLAKGEKTFVNPRNAAAGSLRQLDPRIAASRPLAIFCYGVGKVEQGTLPQ 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E+L +++  G      V       G   YY  +   R  LPY+IDG+V+KVD F  +
Sbjct: 240 RHSEVLARLKQWGLRTPPHVEVVAGLAGCQEYYQRLLERRDGLPYEIDGVVFKVDRFDQR 299

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  AR+PRW I++KF  ++  T++LDI++Q+GRTG LTPVARL+PV +GG  ++NAT
Sbjct: 300 QALGFVARAPRWAIAYKFPAQEELTQILDIEVQVGRTGALTPVARLQPVFVGGVTVSNAT 359

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I+            +D+R+GD V V+RAG+VIP+VV +I++ R PDA+ F  P+
Sbjct: 360 LHNEDEIR-----------RKDVRIGDTVYVRRAGDVIPEVVKVILDHRPPDARFFQMPT 408

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CPIC S V++D     G  +A  RC+GGL C AQ+ E +KHF SR A +I GLG + +D
Sbjct: 409 QCPICGSEVIKD----EGGAIA--RCSGGLYCPAQRKEAIKHFASRRAMDINGLGDKLVD 462

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              + E     +   AD++ L   Q     ++      G  S  NL  +I   ++ +L R
Sbjct: 463 QLIERE----LVEDVADLYHLTAEQLAGLERM------GQKSAANLMHAIEASKHTTLPR 512

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG   A++L          A+E N++ A        L  V  +G ++A  I
Sbjct: 513 FLYALGIREVGEATAQAL----------AEEFNSLEALEGASEERLQEVTDIGPVVATHI 562

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
             F++ P N   ++  L+E        E  K +   +  K  V TGTL+ + R +A+E +
Sbjct: 563 AAFFRQPHNRQVIQR-LREAGVCWPEKEGKKPIPQPLSGKTFVLTGTLESMTREQAKERL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             LG  V++ +S  TD ++VG NPGSKL KA+ L + +++E  F  LL +
Sbjct: 622 QALGGKVTSSVSSNTDYLVVGTNPGSKLTKAKDLHITLLDEGNFRNLLDE 671


>gi|42520616|ref|NP_966531.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81652444|sp|Q73H01|DNLJ_WOLPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|42410355|gb|AAS14465.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 662

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 278/694 (40%), Positives = 411/694 (59%), Gaps = 55/694 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L+ +I+YH+  Y+Q +KP I D+EYD LK++   +A   P++  ++D       +G   +
Sbjct: 11  LQDQINYHNVLYHQKNKPEISDAEYDELKKK---LAEIEPEIYATQDS------VGAPPD 61

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               KV H  P LSLE  ++ + + KF+++I RF     ++ I    EPKIDG   +  Y
Sbjct: 62  ERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLI---EDKIEILCEPKIDGLSFSAIY 118

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E G+FV AA RGDG  GEDV+  +  I   P+ L   +   +EVRGE+YIS +DFL LN+
Sbjct: 119 EDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-GVQGRLEVRGEIYISNSDFLKLNE 177

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
                    +ANPRNAA+G L++L+     +R L +F + L   +E   K Q E+L K+ 
Sbjct: 178 ------NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAE---KSQSEVLNKLE 228

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
            LGF VN      ++  G++ +YNE+ + R  L YDIDG+VYKV++  LQ +LG   ++P
Sbjct: 229 ALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKAP 288

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           R  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVN+GG L++ A+LHN+D IK  
Sbjct: 289 RSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNVGGVLVSRASLHNQDEIK-- 346

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     +DIR GD V +KRAG+VIP++V++  + R P+   F FP  CP C S+ V
Sbjct: 347 ---------RKDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSK-V 396

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           R +  +     AA RC    AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+   D   
Sbjct: 397 RQVEGE-----AAVRCPEEFACKAQMIEKLKHFVSKDAFDIVGLGDKQIEFFY---DLGL 448

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            I+   DIFTL+ R       +E   G+G+ S+ NL +SI  RR I+L+RFIFSLGIR +
Sbjct: 449 -IKQIHDIFTLEER--LDEFNLEEQSGWGEKSIANLLNSIQSRRVITLDRFIFSLGIRFI 505

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   A  LA YY+SY N+   +  +   N +    L+ +  +G   A+++  F+    NI
Sbjct: 506 GQVAAELLADYYVSYNNWYNSMIELSLDNTE----LVGIDGIGKKGAESLESFFSKEHNI 561

Query: 623 CAVEALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
             +  L    ++ P       + +S + NK +VFTG L  + R +A+     LGA VS+ 
Sbjct: 562 KMLNDLTACLQILPV---SSNSSNSVLNNKIIVFTGKLLAMSRGEAKVRAKTLGAKVSSH 618

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           LS KTD +I G+ PGSK +KA +LGV+I++E+Q+
Sbjct: 619 LSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQW 652


>gi|254420802|ref|ZP_05034526.1| DNA ligase, NAD-dependent [Brevundimonas sp. BAL3]
 gi|196186979|gb|EDX81955.1| DNA ligase, NAD-dependent [Brevundimonas sp. BAL3]
          Length = 776

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/595 (44%), Positives = 363/595 (61%), Gaps = 31/595 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E L+ E A +EL+ L  E++ HD   Y  + P I D++YDAL+ R  AI  AFPDL R
Sbjct: 10  PVEDLTAETAAEELAWLAAEMARHD-ALYNEATPEISDADYDALRARNLAIETAFPDLVR 68

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P +K+G  ++    +V H +P LSL+  ++  ++R F+ RI RF +   D  I 
Sbjct: 69  ---PDSPSHKVGAAVSSQFAEVRHGVPMLSLDNAFDEGEVRDFVARIARFLKLPSDEPIA 125

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           F  EPKIDG    + Y  G+    A RGDG +GEDV+A +  I  + + L+ +  P+ IE
Sbjct: 126 FVAEPKIDGLSANLLYVDGRLTLGATRGDGRTGEDVTANLNTIADVKQTLAGDDWPDRIE 185

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244
           +RGEVY     F A N    A GR+ YANPRN A+G LR+ +   IT  R LNFF +  G
Sbjct: 186 IRGEVYAPNAAFAAFNAAAEAEGRRTYANPRNFAAGSLRQKD-ARITGKRPLNFFAYAWG 244

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S  FA+ Q+E LQK++  GFPVN   R+     G+++ Y E++  R+TL YDIDG+VY
Sbjct: 245 EHSSDFAETQWEALQKLKAWGFPVNARSRRVEGAEGLIAVYRELERDRATLGYDIDGVVY 304

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q++LG  ARSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL PV +G
Sbjct: 305 KVDRLDWQRRLGFVARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHPVTVG 364

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++ NATLHNED I+ L           D+R+GD V ++RAG+VIP+++ ++ + R  D
Sbjct: 365 GVVVRNATLHNEDEIERL-----------DVRIGDTVRLQRAGDVIPQILGVVPDLRPAD 413

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A P+ FP  CP+C S  VR+     G  V   RCTGGL C AQ +ERLKHFV R AF+IE
Sbjct: 414 AVPYVFPDKCPVCGSEAVRE-----GDEV-KRRCTGGLICDAQIVERLKHFVGRRAFDIE 467

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++QL  F    +    I+ PADIF L  R +    ++E   G+G+ S+ NL   I+ 
Sbjct: 468 GLGEKQLAAF----NARGWIKEPADIFRLA-RDEARLKELEREDGYGETSIRNLVAGIDA 522

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSL 598
           RR ISL+RF+F LGIR +G + +  LA+ + S+    A  +       +D W +L
Sbjct: 523 RRVISLDRFLFGLGIRDIGEQTSIVLARAFESWPALKAACLQAASGVPSDAWTAL 577



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 67/115 (58%)

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG + A A+  F+  P N+  V AL  E++  +        + +  K +VFTG L++  R
Sbjct: 661 VGPVAALALAHFFHEPHNLQVVAALEAELTQILDAERPKSDTPVAGKTVVFTGALERFTR 720

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+     LGA VS  +S+KTD ++ G   GSKL+ A++ GV+++ E+++L L+
Sbjct: 721 DEAKARAESLGAKVSGSVSKKTDYLVAGPGAGSKLKDAEKHGVQVLTEDEWLALI 775


>gi|329848744|ref|ZP_08263772.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19]
 gi|328843807|gb|EGF93376.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19]
          Length = 714

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 278/734 (37%), Positives = 417/734 (56%), Gaps = 48/734 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++++ AR   S L  ++ YH   YY+   P + D++YDAL+++   +   FPDL  SE P
Sbjct: 1   MTLDDARALHSELAAQVQYHRGLYYREETPELTDADYDALEKQLRDLEAQFPDLKTSESP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                 +G  ++     V H +P LSL+  +  ED+  F  RI RF +   +  + F  E
Sbjct: 61  T---QTVGAVISEKFSPVVHGVPMLSLDNAFADEDVTDFEDRIRRFLKLPAEEPVVFAAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190
           PKIDG   ++ Y  G+ V  A RGDG +GEDV+  IR I  IP  LS    PE IE+RGE
Sbjct: 118 PKIDGLSCSLLYVNGELVRGATRGDGRTGEDVTENIRTIADIPHRLSGTGHPERIEIRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           +Y+    F  +N +  A G + YANPRN ASG LR+L+ T +T  R L FF +  G+ S+
Sbjct: 178 IYVPLQAFADMNAKAQAEGGRTYANPRNFASGSLRQLD-TAVTAARPLRFFAYTWGEVSD 236

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             FA  Q E L K R  G  VN    Q +   G++  YN +   RS L YDIDG+VYKVD
Sbjct: 237 DGFAATQTEALAKFREWGLQVNPQSAQVDGAAGLLDVYNRIGRDRSGLGYDIDGVVYKVD 296

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q++LG  +RSPRW I+HKF  +QA TRL  IDIQ+GR G +TPVARL+PVN+GG +
Sbjct: 297 RLDWQRRLGFVSRSPRWAIAHKFPAQQALTRLAAIDIQVGRMGTMTPVARLQPVNVGGVV 356

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TN TLHN D I+            +DIR+GD V V+RAG+VIP++V I  +ER   A P
Sbjct: 357 VTNVTLHNADEIE-----------RKDIRIGDMVRVQRAGDVIPQIVGIEPDERPDTAVP 405

Query: 428 FSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           + FP+ CP   ++ VVR+ N   G    A +C+G  AC  Q+ E LK+ VSR   +IEGL
Sbjct: 406 YEFPTVCPCPLKTEVVREQN-AAGTEGVARKCSGDQACPHQRTEYLKYVVSRRVLDIEGL 464

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQR-------------------RQQTSTTKIENI 527
           G+  ++ F +       +  PADI+ L                     RQ+ S   ++  
Sbjct: 465 GETYIEIFNR----GGILAEPADIYRLHEKAEAAKVIVLEERKRQSAARQEKSGQAVKKQ 520

Query: 528 LGFGDVSVTN---LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           +   D + T+   L+ +I+ RR++ LERFI +LGI+HVG   A+ LA+ ++S + F   +
Sbjct: 521 VADTDRAFTDLDKLFAAIDIRRDLPLERFIAALGIKHVGDTTAKLLARAFVSERAFHDTL 580

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
                 + + + S+  +  VG +IA+++  ++ +P      E  +++V         + +
Sbjct: 581 VKAAEGDEEAFNSVKDLNQVGPVIARSVTSYFAHPYQRGIYERFIEQVRVQDAEAVAS-T 639

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           S +  K +VFTGTL+K+ R +A+    +LGA VS  +S+KTD+++ G   GSKL+ A +L
Sbjct: 640 SPVSGKTVVFTGTLEKLTRDEAKAQAERLGAKVSGSVSKKTDLVVAGPGAGSKLKTAAEL 699

Query: 705 GVKIMNEEQFLFLL 718
           G++++ E+++L L+
Sbjct: 700 GIQVLTEDEWLSLI 713


>gi|33151983|ref|NP_873336.1| NAD-dependent DNA ligase LigA [Haemophilus ducreyi 35000HP]
 gi|81423646|sp|Q7VMX7|DNLJ_HAEDU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33148205|gb|AAP95725.1| DNA ligase [Haemophilus ducreyi 35000HP]
          Length = 686

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 263/713 (36%), Positives = 415/713 (58%), Gaps = 59/713 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L  ++  ++  Y+  + P++ D+EYD L  +   I   +P+L     P+ P  ++G
Sbjct: 17  QLEALRDQLREYEYHYHVLNNPLVPDAEYDRLINQLKNIEQQYPELI---TPDSPTQRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +V H +P LSL+  ++  DL  F+ RI  +    D N + F  EPK+DG  +
Sbjct: 74  AKPLAGFAQVAHEMPMLSLDNAFSETDLDNFLRRIENYL-SLDANQLTFCCEPKLDGLAV 132

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GE+++A +R I  IP  L + N P  +E+RGE+++    F
Sbjct: 133 SILYIDGVLQLAATRGDGTTGENITANVRTIRNIPLKLKMANPPHRLEIRGEIFMPLKGF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAK---G 253
            ALN   +A G K +ANPRNAA+G LR+L+P  ITR   L    +G+G     + +    
Sbjct: 193 NALNQRALAKGEKSFANPRNAAAGSLRQLDP-QITRQRPLMLNAYGIGVYESNYQRLPTS 251

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y  L+ ++ +G PVN  +R A  +  ++++Y ++++ R+ L YDIDG V KVD+ ++Q+
Sbjct: 252 HYARLEWLKSIGIPVNAEIRLARGYPQLLAFYADIQAKRADLGYDIDGTVLKVDDITIQE 311

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP  + G  ++NATL
Sbjct: 312 TLGFISRSPRWAIAYKFPAQEEMTILKDVEFQVGRTGAITPVAKLEPTLVAGVTVSNATL 371

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + +GD V+++RAG+VIP+++ I+ + R  +A+   FP+ 
Sbjct: 372 HNGDEIERL-----------GVAIGDTVIIRRAGDVIPQIIGIVADRRPANAKKIVFPTA 420

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V+R      G+ VA  RCTGGL C AQ+ E LKHFVSR A NI+G+G++ ++ 
Sbjct: 421 CPVCHSAVIR----IAGEAVA--RCTGGLFCPAQRKEALKHFVSRKAMNIDGVGEKLIEQ 474

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     I  PAD+F L      S  ++E +   G+ S  N  +SI K ++ +L RF
Sbjct: 475 LMARE----LIHTPADLFKL---DPLSLMRLERM---GEKSAQNALNSIEKAKHTTLARF 524

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +FSLGIR VG   A +LA ++ S +N        I   N + L    V  VG+++A  +V
Sbjct: 525 LFSLGIRDVGETTALNLANHFGSLEN--------IRTANVEQLK--EVQDVGEVVANRLV 574

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQ 667
            F+Q   N+  VE L+ +     G H  N+       + +++K +V TGTL +  R +A+
Sbjct: 575 CFWQEQHNVAVVEELIAQ-----GVHWDNIVQLEIADNPLKDKNVVLTGTLTQFSRDQAR 629

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + + QLG  VS+ +S KTD +I G+  G+KL KA+QLG++I++E  F  L++Q
Sbjct: 630 KLLQQLGCKVSSAVSTKTDFLIAGEKAGTKLTKAEQLGIRILDEHAFADLIKQ 682


>gi|113868039|ref|YP_726528.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
 gi|123133949|sp|Q0KA11|DNLJ_RALEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|113526815|emb|CAJ93160.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
          Length = 709

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 260/718 (36%), Positives = 393/718 (54%), Gaps = 54/718 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P   L  E A K ++ L  E+  H+  YY    P I D+EYDAL     A+    P+L  
Sbjct: 15  PAGPLPPEAAAKRVAWLRDELDRHNYQYYVLDAPTIPDAEYDALFSELQALELEHPEL-- 72

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR----IYRFWQKKDD 123
            + P+ P  ++GGE   +   V H +P LSL   +  +D+  F  R    + R      +
Sbjct: 73  -QTPDSPTQRVGGEPLSAFDSVRHRVPMLSLNNGFADDDVLNFDRRCAQGLGRTAPAAGE 131

Query: 124 NSIF-------FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
             +F       +  E K DG  +++RYE G+ V AA RGDG +GEDV+  +R I  IP  
Sbjct: 132 QDLFSAADAVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLK 191

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRY 235
           L    P ++EVRGEV++ + DF  LN+     G K + NPRNAA+G LR+L+P     R 
Sbjct: 192 LRGQAPAVLEVRGEVFMYRGDFDKLNERQAEAGEKTFVNPRNAAAGSLRQLDPRITAKRP 251

Query: 236 LNFFVHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           L+FF +GLG+   +     +  ML     LG PV           G++ +Y ++   R  
Sbjct: 252 LSFFAYGLGELQGVDRPPTHSAMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGQRRDA 311

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPYDIDG+VYKV+  + Q++LG  +R+PR+ ++HKF  ++ +T + DI++Q+GRTG +TP
Sbjct: 312 LPYDIDGVVYKVNALAEQERLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITP 371

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG  +TNATLHNED I+            +D+ +GD V+V+RAG+VIP+VV
Sbjct: 372 VARLKPVFVGGVTVTNATLHNEDEIR-----------RKDVHIGDTVIVRRAGDVIPEVV 420

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            ++   R  DA+ F  P+ CP+C S + +  +       A  RCTGGL C+AQ+ + L H
Sbjct: 421 AVVTERRPDDARAFVMPTACPVCGSHIEKLEDE------AIARCTGGLICAAQRKQALLH 474

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F  R A +IEGLG + ++           +R PAD+F L         K+  +    D S
Sbjct: 475 FAQRRAMDIEGLGDKLVEQLVDQG----IVRTPADLFKL------GVAKLAALERMADKS 524

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL  +I+  R  ++ RFIF+LGIRHVG   A+ LA+++        +++ ++A    D
Sbjct: 525 AANLVAAIDASRETTMNRFIFALGIRHVGEATAKDLARHF-------GKLDALMAA---D 574

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLV 653
             +L+ V  VG ++AQ+I  F+  P N+  +E L    V  +         + +  K  V
Sbjct: 575 EAALLEVNDVGPVVAQSIAHFFAEPHNVEVIEQLRAAGVHWTESEPVAKAPAPLSGKTFV 634

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL+KA+ LGV +++E
Sbjct: 635 LTGTLPTMSREDAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDE 692


>gi|108759370|ref|YP_633776.1| NAD-dependent DNA ligase [Myxococcus xanthus DK 1622]
 gi|123074067|sp|Q1D0P7|DNLJ_MYXXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|108463250|gb|ABF88435.1| DNA ligase, NAD-dependent [Myxococcus xanthus DK 1622]
          Length = 672

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 259/714 (36%), Positives = 407/714 (57%), Gaps = 58/714 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++A      L +E+++H+  YY    P + D++YD L R    +    P L   + P+ P
Sbjct: 5   QKAAARARELHRELAHHNYRYYVLDSPEVSDAQYDKLMRELQDLEAKHPSL---QTPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG       +V H  P +SL  I+  + L +F  RI +         I +  EPK+
Sbjct: 62  TQRVGGAAAEEFGEVVHRAPMISLANIFEDQGLTEFDERIRKLVGLP---GIAYVCEPKL 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGE 190
           DG  I +RYEKG FV  A RGDG +GEDV++ +R I ++P  L     + +P+++EVRGE
Sbjct: 119 DGLAIALRYEKGAFVQGATRGDGTTGEDVTSNLRTIRSLPMSLFPQDDVKVPDVLEVRGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL--GKTS 247
           V+I K DF  LN++    G   +ANPRNAA+G LR+L+P     R L+ F++    G+  
Sbjct: 179 VFIRKKDFQKLNEKREEEGEPLFANPRNAAAGSLRQLDPRMTAARPLSVFLYECVPGEGV 238

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +F K   E L+ ++ LG P+N   R+A    G+   Y+     R  LP+++DG+V KVD
Sbjct: 239 PVF-KTHIEKLEYLKTLGLPINQ-YRRAEGLEGVRQAYDASLKGRHELPFEVDGMVVKVD 296

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   +K+LG+ ++SPRW +++KF  ++ ST ++DI IQ+GRTG LTPVA L+PV +GG  
Sbjct: 297 DEDQRKRLGQVSKSPRWAVAYKFPPEEESTEVMDIGIQVGRTGALTPVAHLKPVKVGGVT 356

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHNED ++            +D+R GD V V+RAG+VIP++V +++++R  D+ P
Sbjct: 357 VARATLHNEDELR-----------RKDVRKGDTVFVRRAGDVIPEIVSVVLSKRPADSAP 405

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C +   +D   + G ++   RCTG  +C AQ +E+++HF SR A +IEGLG
Sbjct: 406 FEFPKHCPVCDAVATKD---EDGAII---RCTGA-SCPAQLVEKIRHFASRLAMDIEGLG 458

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +       +      ++  AD++ L +    +  ++      GD S  NL  S+ + + 
Sbjct: 459 DKLAAQLVST----GRVKAFADLYALTKEDLLTLERM------GDKSADNLIASLERSKQ 508

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            +  RF++SLGIRHVG   A++LA+ +  S   F   + +I            RV  VG 
Sbjct: 509 TTQRRFLYSLGIRHVGDATAKALAEAFPRSEMLFEASLEDI-----------SRVKDVGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+AQ I  F+Q P+N  A+ ALL   V P+    +         K +V TG +  + R +
Sbjct: 558 IMAQVIHTFFQEPQNQEAIRALLAAGVQPAA--PQVATGGPFVGKSVVLTGAMTGMTREQ 615

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E V + G  V+  +SRKTD ++ G++ GSKL+KAQ+LGV+I++E+ FL +LQ
Sbjct: 616 AKEEVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELGVRILDEQAFLQMLQ 669


>gi|167627564|ref|YP_001678064.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|190359258|sp|B0TY02|DNLJ_FRAP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167597565|gb|ABZ87563.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 678

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 270/719 (37%), Positives = 410/719 (57%), Gaps = 56/719 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I  + L+  Q +  +  L + +      Y+   KP+I DS+YD L R    +    P L 
Sbjct: 9   IDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDLVDDNPQLK 68

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
            S   N  L+++GGE+      + H     SL  ++++E+LR F  +I        +  I
Sbjct: 69  PS---NSVLDRVGGEILAGFETIKHKKKMTSLANVFSLEELRDFYDKI--------EYDI 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185
               EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L+  N PE +
Sbjct: 118 ELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEEL 177

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  + +G+G
Sbjct: 178 EVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIG 237

Query: 245 KTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
             S+ F   + Q+E++  ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGL
Sbjct: 238 YFSKDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGL 297

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KV+   LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV 
Sbjct: 298 VFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVA 357

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG +++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R 
Sbjct: 358 VGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVVKSLPQYRK 406

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           PDAQ    P+ CP+C S  + ++N +     A +RCTGG  C AQ  ERLKHFVSR A +
Sbjct: 407 PDAQMVEMPTNCPVCDS-AIENINDQ-----AIYRCTGGWHCQAQTTERLKHFVSRKAMD 460

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+ LG + ++    ++     I+ PADI+ L   Q T   ++      G  S  N+ DSI
Sbjct: 461 IDKLGAKLIEQLVAAD----LIKYPADIYKLNFEQLTGLERM------GAKSSQNVLDSI 510

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +  SL RFIF++GI+ VG   + +LA ++ S ++F +            +  LI + 
Sbjct: 511 TKSKEPSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------KFEQLIEIN 560

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQ 659
            +G+IIA+ IV F+Q+  NI  V+ LL   S +I   EK   +  E   NK +V TGT +
Sbjct: 561 DIGEIIAKNIVSFWQDSLNIQIVDELLGN-SINIQNPEKIEQAHNESFTNKTIVITGTFE 619

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ LGV+++ EE    LL
Sbjct: 620 NYNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTKAQDLGVEVIFEEDLQNLL 678


>gi|307132386|ref|YP_003884402.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
 gi|306529915|gb|ADM99845.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
          Length = 683

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 260/710 (36%), Positives = 406/710 (57%), Gaps = 56/710 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +L  ++ YH+  Y+    P I D+EYD L      +  A P+L     P+ P  ++G
Sbjct: 18  QIEALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKTLEQAHPELV---TPDSPTQRVG 74

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                +   + H +P LSL+ +++      F  RI    + K+D  + F  E K+DG  +
Sbjct: 75  ATPLDAFDTIAHEVPMLSLDNVFDETSFLAFSKRIND--RLKNDGELTFCCELKLDGLAV 132

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           ++ YE G  V AA RGDG +GE+++A IR +  IP R+   NIP+ +EVRGEV++    F
Sbjct: 133 SLLYENGLLVRAATRGDGTTGENITANIRTVGAIPLRLRGDNIPQRLEVRGEVFMKHKGF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAKGQYE 256
            ALN+E    G K +ANPRNAA+G LR+L+P    TR L F  +G+G           ++
Sbjct: 193 EALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTFLCYGVGLVEGGALPDTHWQ 252

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L + R  G PV++ +R       ++ +Y +++  R TL +DIDG+V KV+E +LQ++LG
Sbjct: 253 RLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERETLGFDIDGVVIKVNELTLQERLG 312

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW ++ KF  ++  T L D++ Q+GRTG +TPVARLEPV + G +++NATLHN 
Sbjct: 313 FVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVVVSNATLHNA 372

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            I++GDRV V+RAG+VIP++V ++++ER  DA+P  FP  CP+
Sbjct: 373 DEIERL-----------GIQIGDRVAVRRAGDVIPQIVSVVLSERPADARPVVFPEQCPV 421

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S + R      G+ V   RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D   +
Sbjct: 422 CGSELER----VDGEAVT--RCTGGLFCGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 475

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     ++ PAD+F L     T   ++      G  S  NL +++NK ++ +  RF+++
Sbjct: 476 KE----YVKTPADLFRLSAGILTGLDRM------GPKSAQNLVNALNKAKSTTFARFLYA 525

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A SLA ++ + +          A  + D  +L +V  VG ++A  +  F 
Sbjct: 526 LGIRDVGEATAASLASHFGTLE----------ALQSADLEALQQVQDVGIVVATHVRNFL 575

Query: 617 QNPRNICAVEALLKEVSPSIGRHE--------KNVSSEIENKKLVFTGTLQKIQRHKAQE 668
               N   ++ L+ E   +IG H         +   S    K +V TG+L  + R +A++
Sbjct: 576 DEAHNQQVIQELISE---NIGIHWPAPVVVDVEASDSPFAGKTVVLTGSLTLLSRDEAKD 632

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 633 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLTKAQELGIEVIDEAEMMRLL 682


>gi|90579891|ref|ZP_01235699.1| DNA ligase [Vibrio angustum S14]
 gi|90438776|gb|EAS63959.1| DNA ligase [Vibrio angustum S14]
          Length = 670

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 257/695 (36%), Positives = 405/695 (58%), Gaps = 49/695 (7%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
           YH   YY    P I D+EYD + ++   I    P+    + P+    ++GG       +V
Sbjct: 18  YHGHRYYVEDNPEIPDAEYDRMMQQLIKIEADHPEWITVDSPS---QRVGGAALEGFTQV 74

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H I  LSL+  +N +DLR F  R+    + +   ++ +  EPK+DG  +++ YE G  V
Sbjct: 75  KHEIAMLSLDNAFNDDDLRAFQKRLQD--RLRSGATLSYCCEPKLDGLAVSLMYENGVLV 132

Query: 150 YAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
            AA RGDG +GE+++  +R I  IP ++   + PE +EVRGEV++ K  F ALN + +  
Sbjct: 133 QAATRGDGATGENITHNVRTIRAIPLKLQGDDWPERLEVRGEVFMPKKGFEALNAKALKK 192

Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQKMRCLGF 266
           G K +ANPRNAA+G LR+L+P    TR L+F+ + +G       A  QYE L +++  G 
Sbjct: 193 GDKAFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVDGRELANTQYERLCQLKAWGL 252

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           P+   +R+ ++   ++SY+  +   R +L Y+IDG+V KVD+   Q+QLG  AR+PRW I
Sbjct: 253 PMCPEIRKVDSIEDVISYHQSIGEKRQSLGYEIDGVVIKVDDVDTQQQLGFVARAPRWAI 312

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NATLHN D         
Sbjct: 313 AYKFPAQEEMTILNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNAD--------- 363

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
           +V R G  + +GD V+++RAG+VIP++  ++ + R  +AQ   FP+ CP+CQS+V R   
Sbjct: 364 EVARLG--VMIGDTVIIRRAGDVIPQIASVVESRRPENAQAIVFPTECPVCQSKVER--- 418

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
              G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G G++ ++     E     +  
Sbjct: 419 -IEGEAVA--RCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDRE----MVTT 471

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           PAD+F     + T   ++      G  S   L D++N  +  +L RFI SLGIR VG   
Sbjct: 472 PADLFKFSAGEVTVLERM------GPKSAQKLVDALNASKLTTLPRFIHSLGIREVGEAT 525

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A +LA Y+ + ++ +Q               LI VP VGDI+A  I  F++   N+  V 
Sbjct: 526 AANLANYFETLESISQATKE----------QLIEVPDVGDIVAAHIFNFFREEHNMVVVN 575

Query: 627 ALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
             L+EV    P I + +++V   ++ K +V TG+L ++ R  A+  + +LGA V+  +S+
Sbjct: 576 E-LQEVGIHWPEIEKRDEDVELPLDGKVVVLTGSLSQLTRSDAKAALQKLGAKVTGSVSK 634

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           KTD+++ G+  GSKL KAQ+LG++I +E++ + L+
Sbjct: 635 KTDLLVAGEAAGSKLTKAQELGIEIWDEQKLVDLM 669


>gi|258544861|ref|ZP_05705095.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
 gi|258519884|gb|EEV88743.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
          Length = 668

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 261/704 (37%), Positives = 403/704 (57%), Gaps = 48/704 (6%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           L++L +EI  HD  YY    P+I D+EYDAL R   A+  A  +   ++ P+    ++GG
Sbjct: 7   LAALREEIRAHDHAYYVLDNPLIADAEYDALLRELRALEAASGEPVPADSPS---QRVGG 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           + + +   V H++P LSL+ +++ E+   F+ R+    ++ D + +  + EPK DG  I+
Sbjct: 64  KADGAFAPVAHAVPMLSLDNVFSEEEFAAFVKRLQ---ERLDHDELLLSAEPKFDGLAIS 120

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           +RYE G    AA RGDG +GEDV+A +R I  IP R+L    P +IE+RGE+Y+ K  F 
Sbjct: 121 LRYENGVLTRAATRGDGATGEDVTANVRTIRAIPLRLLDATPPAVIEIRGEIYMPKAAFA 180

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE-M 257
           ALN      G K +ANPRNAA+G LR+L+P    +R+L+F+ +GLG          Y  +
Sbjct: 181 ALNAAAERDGGKTFANPRNAAAGSLRQLDPAITASRHLSFYAYGLGAHDGYALPATYSAL 240

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L + R  G PV       ++    V+Y + +   R  LPY+IDG+VYK D ++ Q+  G 
Sbjct: 241 LAQYRDWGVPVCPLQESLSSAAAAVAYMDALGKKRHDLPYEIDGVVYKADRYADQQAAGF 300

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW I+ KF   + +T +  ID+Q+GRTG +TPVARL PV +GG  +TNATLHN D
Sbjct: 301 VSRAPRWAIAWKFPAVEKTTVVEAIDVQVGRTGAVTPVARLRPVEVGGVTVTNATLHNAD 360

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
                    +V R  +D+RVGD V V+RAG+VIP++V  ++  R  D+QPF+ P+ CP+C
Sbjct: 361 ---------EVAR--KDVRVGDTVFVRRAGDVIPEIVKTVLEARPADSQPFAMPTHCPVC 409

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S ++R      G+ VA  RC+GGL C AQ+++ L HF SR A +I+GLG + ++   + 
Sbjct: 410 ESEIIR----PEGEAVA--RCSGGLHCRAQRVQALIHFASRKALDIQGLGDKLIEQLVQD 463

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +  PAD+F L      +  ++       + S  N+  ++   +  +L RFI++L
Sbjct: 464 G----RVHSPADLFALTLADWAALPRM------AEKSAQNILAALEAAKATTLPRFIYAL 513

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG   A  LA++Y       +E+  ++A + DD   L  +  +G ++AQ I  F+ 
Sbjct: 514 GIREVGNVSAELLARHY-------RELPALLAASEDD---LQAIDGIGPVMAQYIRHFFL 563

Query: 618 NPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +  N   + AL       P +        S +  K +V TGTL  + R +A  ++ +LG 
Sbjct: 564 DDANRAVIAALQAAGIHWPVVEAPVIAADSPLAGKTVVITGTLPTMTRDEAAAHIARLGG 623

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             ++ +S+KTD ++ GD  GSKLEKAQ LGV I++E Q L  L+
Sbjct: 624 KTASAVSKKTDYLLAGDKAGSKLEKAQSLGVAIIDEAQLLAWLE 667


>gi|88800009|ref|ZP_01115580.1| DNA ligase, NAD-dependent [Reinekea sp. MED297]
 gi|88777287|gb|EAR08491.1| DNA ligase, NAD-dependent [Reinekea sp. MED297]
          Length = 674

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 261/705 (37%), Positives = 391/705 (55%), Gaps = 53/705 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L Q+I  +D  YY  ++  I D EYD L      I    P       P  P  ++ G  
Sbjct: 10  ALIQQIRRYDHEYYVLNESAIPDVEYDRLMEELKRIESEHPQWV---TPQSPTQRVAGAP 66

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                 V H +P LSL+  +N +DL  F+ R+    +  D + I F  EPK+DG  +++ 
Sbjct: 67  QAGFETVEHRMPMLSLDNAFNHDDLGAFVKRLKD--RLNDPSPIEFACEPKLDGIAVSLL 124

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLAL 201
           YE+G  V  A RGDG +GED++A +R I +IP  L  +  PE++EVRGE+Y+ K  F  +
Sbjct: 125 YEQGHLVRGATRGDGTTGEDITANVRTIRSIPLSLQGDGWPEVLEVRGEIYMPKAGFERM 184

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG-----QY 255
           NDE    G K + NPRNAASG LR+L+     TR L    + +G    +F  G     QY
Sbjct: 185 NDEARERGDKVFVNPRNAASGSLRQLDSRLTATRPLEMCCYSVG----VFEGGTLPDTQY 240

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           +++QK    G  +N  +       G++ YY++++  R+ LPY+IDG+VYKV+ F LQ++L
Sbjct: 241 QLMQKFSEWGLKINPEMALVTDVQGLLDYYDQLEQKRNGLPYEIDGIVYKVNSFGLQRRL 300

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I+ KF  ++  T LLD++ Q+GRTG LTPVARLEPV +GG  ++NATLHN
Sbjct: 301 GFVSRAPRWAIARKFPAQEEVTTLLDVEFQVGRTGALTPVARLEPVFVGGVTVSNATLHN 360

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           D+ +GDRV+V+RAG+VIP+VV  +  +R P+A+P + P  CP
Sbjct: 361 MDEIERL-----------DVHIGDRVIVRRAGDVIPQVVKSLAEDRSPEARPITAPEECP 409

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+V R          A  RCTGG+ CSAQ+ E LKHFVSR A +I+G G++ +D   
Sbjct: 410 ECGSKVDRVAGE------AVMRCTGGMICSAQRREALKHFVSRKAMDIDGFGEKIVDALL 463

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   I   +DIF L + + ++  ++      GD S  NL  +I+  R  +L RFIF
Sbjct: 464 AGN----KIHAASDIFELTQEEVSALERM------GDKSAANLIAAIDAARETTLARFIF 513

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   AR+LA ++ + +                   L+ V  VG  +A  +V +
Sbjct: 514 ALGIREVGETTARNLAMHFGTIEKLMSATEA----------QLLDVEDVGPKVAAHVVNY 563

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +   +N   ++ L+              +S +  +  V TG + ++ R +A++Y+ QLGA
Sbjct: 564 FSEEQNRIEIQRLIALGVTWDDPIPDQSASVLAGQTWVVTGKISQMSRDEAKDYLLQLGA 623

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V+  +S KT  ++ G   GSKL KA++LGV +M+E +F+  L Q
Sbjct: 624 KVAGSVSAKTTQVVAGPGAGSKLRKAEELGVPVMDEAEFVEWLTQ 668


>gi|73541575|ref|YP_296095.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
 gi|123732913|sp|Q470D2|DNLJ_RALEJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|72118988|gb|AAZ61251.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
          Length = 711

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 266/731 (36%), Positives = 394/731 (53%), Gaps = 64/731 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P   L    A + +  L  E+  H+  YY    P I D+EYDAL     A+    P+L  
Sbjct: 15  PAGGLPPATAAERVQWLRDELDRHNYQYYVLDAPTIPDAEYDALFTELQALEAEHPELL- 73

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR----IYRFWQKKDD 123
              P+ P  ++GG    +   V H +P LSL   ++ ED+  F  R    + R      +
Sbjct: 74  --TPDSPTQRVGGAPLSAFDTVRHRVPMLSLNNGFSDEDVTGFDRRCAQGLGRSAAAGGE 131

Query: 124 NSIF-------FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
             +F       +  E K DG  +++RYE G+ V AA RGDG +GEDV+  +R I  IP  
Sbjct: 132 QDLFSAAEGVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLK 191

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRY 235
           L    P ++EVRGEV++ + DF  LN      G K + NPRNAA+G LR+L+P     R 
Sbjct: 192 LRGAAPAVLEVRGEVFMYRRDFDKLNARQAEAGDKTFVNPRNAAAGSLRQLDPRITAKRP 251

Query: 236 LNFFVHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           L+FF +GLG+   I     +  ML     +G PV N         G++ +Y ++   R  
Sbjct: 252 LSFFAYGLGELQGIERPATHSAMLDGFATMGLPVCNERAVVKGAQGLLDFYRKVGEKRDQ 311

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPYDIDG+VYKV+  + Q+QLG  +R+PR+ ++HKF  ++ +T + DI++Q+GRTG +TP
Sbjct: 312 LPYDIDGVVYKVNALAEQEQLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITP 371

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG  +TNATLHNED ++            +D+ +GD V+V+RAG+VIP+VV
Sbjct: 372 VARLQPVFVGGVTVTNATLHNEDEVR-----------RKDVHIGDTVIVRRAGDVIPEVV 420

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            +++  R  DA+ F  P+ CP+C S + R  +       A  RCTGGL C+AQ+ + L H
Sbjct: 421 AVVLERRPDDARAFVMPTACPVCGSHIERLEDE------AIARCTGGLICAAQRKQALLH 474

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F  R A +IEGLG + ++           +R PAD++ L         K+  +    D S
Sbjct: 475 FAQRRAMDIEGLGDKVVEQLVDQG----IVRTPADLYKL------GVAKLAALDRMADKS 524

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL  +I   R+ +  RFIFSLGIRHVG   A+ LA+++            ++A    D
Sbjct: 525 AGNLVAAIEASRSTTFNRFIFSLGIRHVGEATAKDLARHFGKLDGL------MVA----D 574

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIE 648
             +L+ V  VG ++AQ+IV F+  P N+  +E L        E  P + R      + + 
Sbjct: 575 EAALLEVNDVGPVVAQSIVNFFGEPHNVEVIEQLRAAGVHWPESEP-VAR----APAPLA 629

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K  V TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL+KA+ LGV +
Sbjct: 630 GKTFVLTGTLPSLSREAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPV 689

Query: 709 MNEEQFLFLLQ 719
           ++E   L LL+
Sbjct: 690 LDEAGMLALLE 700


>gi|166216279|sp|A0LI67|DNLJ_SYNFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 675

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 268/713 (37%), Positives = 388/713 (54%), Gaps = 59/713 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A   + +L +EI +H+  YY   +P I D  YD L R    +  ++P L     P+ P
Sbjct: 5   EKAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALI---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G           H+IP LSLE   +  ++ +F  R+ +    + D  + F  EPK+
Sbjct: 62  TQRVGAAPAEKFLPFPHTIPMLSLENAMSEAEVFEFARRVRKILGDRGD--VDFMAEPKM 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----SLNIPEIIEVRG 189
           DG  + + YE G+   A  RGDG+ GEDV+   + I  IP  L       + P  I VRG
Sbjct: 120 DGLAVELVYENGELTGAGTRGDGYVGEDVTRNAKTIRAIPLKLYAGAGGASPPARIAVRG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+ + DF ALN      G   +ANPRNAA+G LR+L+P+    R L  F +G+G+ S 
Sbjct: 180 EVYMDRKDFAALNRSREQAGEPLFANPRNAAAGSLRQLDPSVTAARSLKAFFYGVGEVSG 239

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q + L+++R  G PVN   R   +    VS+YNE+ + R  LP++IDG+V KV+ 
Sbjct: 240 YRFKTQAQTLEQLRRWGLPVNPLSRVCPSIEDAVSFYNEIAAGRDALPFEIDGVVVKVNS 299

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+ LGE++RSPRW I++KF+  QA TR+LDI +Q+GRTG+LTPVA LEPV +GG  +
Sbjct: 300 IEWQEMLGEKSRSPRWAIAYKFSPHQARTRVLDIKVQVGRTGVLTPVAELEPVTVGGVTV 359

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN+D ++            +DIRV D+V+V+RAG+VIP+VV++I   R    + F
Sbjct: 360 RRATLHNQDEVE-----------RKDIRVRDQVMVRRAGDVIPEVVEVIGEARTGGEEVF 408

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C S VVR   P+     A HRC     C AQ    L+HF SRDA NIEGLGK
Sbjct: 409 QMPGQCPSCGSEVVR--LPEE----AVHRCL-NRNCPAQIKASLRHFASRDAMNIEGLGK 461

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +            +   +D++ L      S   +E + GF   S  NL +SI + +  
Sbjct: 462 NIVSMLVDRG----IVESVSDLYRL------SVETLEQLPGFAGKSSRNLVESIERSKKT 511

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L  F+++LGI HVG+ +AR LA+ +            + A        L+ V  VG+++
Sbjct: 512 NLADFLYALGIYHVGSHVARLLAERF----------GTLDAVRRASVEELMSVNGVGEVV 561

Query: 609 AQAIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           A+++V ++  P N   VE+LL          P  G     V +    K +VFTG L  + 
Sbjct: 562 ARSVVHYFSLPANRTLVESLLSAGLEMAATEPEAG----PVDAFWNGKTVVFTGALSSMT 617

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R  A       GA VS  +SRKTDI++ G +PGSK+EKA+QLG+ I++E +FL
Sbjct: 618 RSNAAALTASRGARVSDSVSRKTDIVVAGADPGSKVEKARQLGITILDEREFL 670


>gi|329297490|ref|ZP_08254826.1| NAD-dependent DNA ligase LigA [Plautia stali symbiont]
          Length = 672

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/713 (35%), Positives = 416/713 (58%), Gaps = 59/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++++L   + +H+  Y+    P I D+EYD L R    +  A PDL     P+ P  +
Sbjct: 5   QEQITALRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELESAHPDLI---TPDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +  +V H +P LSL+  ++      F  R+    +  D+  + +  E K+DG 
Sbjct: 62  VGAAPLATFEQVRHEVPMLSLDNTFDEAGFLAFNKRMQDRLKSTDN--LTYCCELKLDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ YE G  V AA RGDG +GE+++A +R I  IP R+   NIP  +EVRGEV+++++
Sbjct: 120 AVSLLYENGLLVRAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVFMTES 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKG 253
            F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G G  +  E+ A  
Sbjct: 180 GFEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPAS- 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ LQ+ +  G PV++ +R  +T   ++++Y +++  R +L +DIDG+V KVD  +LQ+
Sbjct: 239 HWQRLQQFKAWGLPVSDRIRLVHTADEVLAFYRQVEQDRPSLGFDIDGVVIKVDSQALQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++NATL
Sbjct: 299 QLGFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  DA+   FPS 
Sbjct: 359 HNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPADAREIVFPSH 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S    D+    G+ V   RCTGGL C AQ+ E LKHFVS  A +++G+G + +D 
Sbjct: 408 CPVCGS----DVESVEGEAVT--RCTGGLICGAQRKEALKHFVSHRAMDVDGMGDKIIDQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + E     ++ PAD+F L      +  K+  +   G  S  N+ D++ K +  +L RF
Sbjct: 462 LVEKE----YVKTPADLFRL------TAGKLTGLDRMGPKSAQNVVDALEKAKLTTLPRF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A +LA ++        E+  ++   N D  +LI V  VG ++A  + 
Sbjct: 512 LYALGIREVGEATAANLANHF-------GELEKVM---NADLDALIAVQDVGKVVAAHVR 561

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKIQRHK 665
            F +   N      ++++++  +G H         + + S    K +V TG+L ++ R  
Sbjct: 562 NFMEEESN----REVIRQLTDEVGVHWPAVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDD 617

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 618 AKARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670


>gi|300717845|ref|YP_003742648.1| DNA ligase [Erwinia billingiae Eb661]
 gi|299063681|emb|CAX60801.1| DNA ligase [Erwinia billingiae Eb661]
          Length = 672

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 262/715 (36%), Positives = 414/715 (57%), Gaps = 51/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + ++++L+  + +H+  Y+    P + D+EYD L R    +  A P+L  ++ P  
Sbjct: 1   MESVQDKITALQTTLRHHEYQYHVMDDPEVPDAEYDRLMRELRELEQAHPELVTADSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+  ++ E    F  R+    +  DD  I F  E K
Sbjct: 60  --QRVGAAPLGAFEQVRHEVPMLSLDNAFDEESYLAFYKRVQDRLKNTDD--ITFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++A +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPSRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           +    F ALN+E    G K +ANPRNAA+G LR+L+P     R L FF +G G  +  E+
Sbjct: 176 MPLAGFEALNNEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +     LQ+ +  G PV++ ++  +T   ++++Y +++  R TL +DIDG+V KVD  
Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRIKLCHTAEEVLAFYRQVEQDRPTLGFDIDGVVIKVDSQ 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 DLQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVIVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GDRV+++RAG+VIP+VV +I +ER  DA+   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDRVIIRRAGDVIPQVVGVIESERPDDAREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G++VA  RCTGGL C AQ+   LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +S+ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNSLEKAKTTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF++SLGI  VG   A +LA ++ S       +  I+A + D   +LI V  VG ++A
Sbjct: 508 LARFLYSLGISEVGEATAANLAAHFGS-------LEKIMAADLD---ALIAVQDVGTVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVS---PSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F     N   +  L++E     P++   +   + S    K +V TG+L  + R +
Sbjct: 558 SHLRNFMDEESNREVIRQLVEEAGINWPAVEVVNAAEIDSPFAGKTVVLTGSLTILSRDE 617

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 618 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMIRLLGE 672


>gi|238895883|ref|YP_002920619.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae NTUH-K2044]
 gi|238548201|dbj|BAH64552.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 671

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/715 (35%), Positives = 413/715 (57%), Gaps = 52/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R+   +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K  + + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTDHLTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A     +LQ  +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  
Sbjct: 236 PASHSARLLQ-FKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   
Sbjct: 355 NATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+CQS V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCQSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA ++ + +   Q               L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEALEQATIE----------ELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
                F+    N   +  LL E     +P + + E+ + S    K +V TG+L ++ R  
Sbjct: 558 THTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEE-IDSPFAGKTVVLTGSLSQLSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 617 AKERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|260774893|ref|ZP_05883794.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609148|gb|EEX35306.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 669

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 261/709 (36%), Positives = 406/709 (57%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++ ++ L+ L + + YH   YY    P + D+EYD L R    +    PDL   + P+  
Sbjct: 3   QEIQERLNQLRETLHYHGVKYYVEDNPEVPDAEYDRLMRELLELEAEHPDLVSIDSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+       VTH IP LSL+  ++ E+L  F  R+       + N   F  EPK+
Sbjct: 61  -QRVGGQPLDGFQSVTHEIPMLSLDNAFDDEELESFHKRMSDRIPTAEFN--VFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I +IP  LS    P+ IEVRGEV++
Sbjct: 118 DGLAVSLLYENGILVQAATRGDGTTGENITENVRTIKSIPLKLSGQGWPQRIEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FA 251
            K  F  LN +    G K + NPRNAA+G LR+L+     TR L+F+ + +G    I  +
Sbjct: 178 PKEGFDKLNQQAQKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGIALS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +  YE   +++  G P+    R+      + +YY ++   R  LPY+IDG+V KVD+ +L
Sbjct: 238 ESHYERFLQLKGWGLPMCPETRRVANLTEVKAYYQDILERREALPYEIDGVVIKVDDIAL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QEQLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            ++VGD V+++RAG+VIP++V +I   R  +A+   FP
Sbjct: 358 TLHNADEIERL-----------GVKVGDSVIIRRAGDVIPQIVSVIEERRPGNARDIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A +++GLG++ +
Sbjct: 407 ERCPVCSSEVER----IEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L      S   I  +   G  S  N+ D++N+ +  +L 
Sbjct: 461 EQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALNQAKLTTLP 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+Y+       + ++ + A N++    LI V  +GDI+A  
Sbjct: 511 RFLYSLGIREVGEATAANLAQYF-------KTLDAVKAANHE---QLIEVSDIGDIVASH 560

Query: 612 IVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++ F+   +N   ++ LL +    P I    ++    +  K +V TG+L ++ R+ A+  
Sbjct: 561 VIAFFAQDKNQQVIQDLLDQGIEWPEIEEQSEDTPQPLAGKTVVLTGSLSQLSRNDAKSA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  + L+
Sbjct: 621 LQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLVDLI 669


>gi|59712497|ref|YP_205273.1| NAD-dependent DNA ligase LigA [Vibrio fischeri ES114]
 gi|75353581|sp|Q5E3L1|DNLJ_VIBF1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|59480598|gb|AAW86385.1| DNA ligase, NAD(+)-dependent [Vibrio fischeri ES114]
          Length = 668

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 262/714 (36%), Positives = 410/714 (57%), Gaps = 54/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SIEQ    L  L+Q+++YH   YY    P + D+EYD + ++  +I    P+L   + P
Sbjct: 1   MSIEQT---LDELKQQLNYHAYRYYVEDSPELPDAEYDRMMQQLLSIESEHPELVTVDSP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GGE      ++ H IP LSL+  ++ E+L  F  R+      K  +   F  E
Sbjct: 58  S---QRVGGEALDGFTQIQHEIPMLSLDNAFSDEELEAFEKRMNDRLISKPVS--LFCCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  +++ Y  GK V A  RGDG +GE+++  +R I  IP  L     P  +EVRGE
Sbjct: 113 PKLDGLAVSLLYVDGKLVQAGTRGDGTTGENITENVRTIRCIPLTLQGEGWPTRLEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTS 247
           V++ K  F ALN+  +  G KP+ANPRNAA+G LR+L+     TR L+F+ + +G  +  
Sbjct: 173 VFMPKAGFEALNERALKRGEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVIEGG 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+     Y+   +++  G P+    +Q ++   + +YY ++   R  L Y+IDG+V KVD
Sbjct: 233 EL-ETSHYQRFVQLKSWGLPMCEETKQCHSLTEVKAYYKDILERRDALKYEIDGVVIKVD 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  
Sbjct: 292 DIALQEQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I  L            + +GD V+++RAG+VIP++V ++   R  D++ 
Sbjct: 352 VSNATLHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKA 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             +P  CP+C S + R      G+ V   RC  GL C AQ+ E LKHFVSR A +++GLG
Sbjct: 401 IVYPIHCPVCGSNLER----VEGEAVT--RCGAGLVCQAQRKEALKHFVSRKALDVDGLG 454

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     +  PAD+F L     T   ++      G  S  N+ D++NK + 
Sbjct: 455 DKVVEQLVDKE----MVETPADLFKLSAGLLTVLERM------GPKSAQNVVDALNKAKA 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF++SLGIR VG   A +LA ++ + +          A     +  LI V  VGDI
Sbjct: 505 TTLPRFLYSLGIREVGEATAANLAAHFYTLE----------AIQVATFEQLIEVSDVGDI 554

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +A+ ++ F+  P N   +E  L+E+    P I   +++V   +  K +V TGTL K++R+
Sbjct: 555 VAKHVLNFFAEPHNKTVIED-LQEMGIHWPEIKALDESVPQPLAGKVVVLTGTLHKLKRN 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+  + +LGA V+  +S+KTDI+  G+  GSKL KA++LGV++MNEEQ + LL
Sbjct: 614 EAKAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKAEELGVEVMNEEQLIELL 667


>gi|302878427|ref|YP_003846991.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2]
 gi|302581216|gb|ADL55227.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2]
          Length = 674

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/710 (36%), Positives = 396/710 (55%), Gaps = 52/710 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L  EI  H+  YY    P + D+ YD L R    +    P+   S+ P     +
Sbjct: 7   QQRIKALRSEIEAHNYQYYVLDAPTVPDAGYDTLFRELQRLEAQHPEFLTSDSPT---QR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G        +V H  P LSL   ++ +++  F  R+         + + + +E K DG 
Sbjct: 64  VGAAPLKYFAEVPHRTPMLSLNNAFSADEVIAFDARVR---DALGIDEVEYAVELKFDGL 120

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----IEVRGEVYI 193
            I + Y  G FV  A RGDG +GEDV+  +R + +IP  L     E+    +EVRGEV +
Sbjct: 121 AINLSYRNGIFVQGATRGDGSTGEDVTENLRTVRSIPLRLKEANGEVLCADVEVRGEVLM 180

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF  LN++    G K + NPRNAA+G LR+L+     TR+L+F+ +G+G    +   
Sbjct: 181 FTRDFDLLNEQQRLNGEKEFVNPRNAAAGSLRQLDSAVTATRHLSFYAYGVGLCDGVNLS 240

Query: 253 GQYEM-LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           G++++ + ++   G PV           G++ YY EM ++R+ LP+ IDG+VYKV++ + 
Sbjct: 241 GKHDLQMAQLADWGVPVATQRSTVQGVAGLLDYYKEMGALRAALPFAIDGVVYKVNDIAQ 300

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  +R+PR+ I+HKF  ++A T LLDID+Q+GRTG LTPVARL PV +GG  +TNA
Sbjct: 301 QQMLGFVSRAPRFAIAHKFPAEEAMTTLLDIDVQVGRTGALTPVARLTPVFVGGVTVTNA 360

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED I+            +D+R+GD V+V+RAG+VIP+V  +++  R  DA+ FS P
Sbjct: 361 TLHNEDEIR-----------RKDVRIGDTVIVRRAGDVIPEVARVVLERRPSDARVFSMP 409

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S VVR+ +       AA RCTGGL C AQ+ + L HF  R A NI+GLG + +
Sbjct: 410 QACPVCGSHVVREED------AAAWRCTGGLFCPAQRKQALLHFAGRRAMNIDGLGDKLV 463

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +    ++     +  PAD++ L      S  ++      G+ S  NL D+I   R  +L 
Sbjct: 464 EQLVDAQ----QVSTPADLYKLGMSGLVSLERM------GEKSALNLLDAIEASRKTTLA 513

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+F+LGIR+VG   AR LA+++ +     Q           D   L +V  VG ++AQ+
Sbjct: 514 RFLFALGIRNVGETTARDLAQHFGALDAIMQA----------DAERLQQVRDVGPVVAQS 563

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEY 669
           +V+F+    N+ AV A L+E       H      +     K  V TGTL  + R +A+E 
Sbjct: 564 MVDFFAEAHNL-AVIAQLREAGVHWDEHSPAPQEDRIYTGKTFVLTGTLASLSRQQAKER 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA VS  +S+KTD ++ G + GSKLE+A +LGV +++E +FL L++
Sbjct: 623 LEALGAKVSGSVSKKTDFVVAGSDSGSKLERAMELGVAVLSESEFLLLIE 672


>gi|289165264|ref|YP_003455402.1| DNA ligase [Legionella longbeachae NSW150]
 gi|288858437|emb|CBJ12315.1| DNA ligase [Legionella longbeachae NSW150]
          Length = 671

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/713 (37%), Positives = 403/713 (56%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I++ +++ + L+ +I  +D  YY   +P++ D EYD   R    +    P+L  ++ P  
Sbjct: 3   IDEIKEQAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTADSPT- 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLE 131
              ++GG    +   VTH  P LSL  +++ E+L+ F+ R+    +K D+    + FT E
Sbjct: 62  --QRVGGTPADAFAPVTHRQPMLSLSNVFSEEELQAFVKRVT---EKLDEPAQQLVFTCE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  + I YE G  VYAA RGDG +GE+++A I+ I  IP VL  N  P  IE+RGE
Sbjct: 117 PKLDGLAVNITYENGVLVYAATRGDGTTGENITANIKTIAAIPLVLRSNKPPRFIEIRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+ K+ F   N +   +G K +ANPRNAA+G LR+LNP     R L  + +G+G   + 
Sbjct: 177 VYMPKSGFEQYNKKAKELGEKTFANPRNAAAGSLRQLNPAVTANRPLAIYCYGIGACEDY 236

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E LQ ++ LGF V++  ++     G + YY  M + R  LP++IDG+VYKVD 
Sbjct: 237 RLPNTHWEQLQLLKELGFKVSSESKREVGIKGCLDYYCNMLARRDQLPFEIDGVVYKVDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  +R+PR+  +HKF   +  T +L +D Q+GRTG LTPVARL PVN+ G  +
Sbjct: 297 IALQQQLGFISRAPRFACAHKFPATEEITEILAVDFQVGRTGALTPVARLAPVNVAGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD+V+++RAG+VIP+VV +++ +R  D +  
Sbjct: 357 SNATLHNMDEIT-----------RKDIRIGDKVIIRRAGDVIPEVVSVVLEQRPADTKEI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+     G+ VA  RC GGL C AQ    + HF SR A +IEGLG 
Sbjct: 406 CLPLKCPVCDSDVVRE----EGEAVA--RCIGGLFCKAQLKRMMWHFASRKAMHIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++      D      +P D++ L        + + N+   G+ S  NL  ++   +  
Sbjct: 460 VLIEQLV---DEGIVRHLP-DLYRL------DVSTLANLPRMGEKSAKNLLQALEHSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF+++LGIR +G   AR LA+++           +I A +N     L+ +  +G + 
Sbjct: 510 TLSRFLYALGIREIGEASARVLAEHF----------GDIEAISNATEADLMSLEDMGPVG 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A  IV F+    N+  ++ LL E+    P I + ++N    +  K +V TGTL  + R +
Sbjct: 560 AANIVHFFAQTHNLQVIQHLL-ELGIHWPKIEKKQQNKEHPLFGKTVVLTGTLNTLSREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  +  LGA VS  +S KTD +I G   G+KL+KA  LG+ I++EEQFL +L
Sbjct: 619 AKAKLLILGAKVSGSVSAKTDYVIAGIEAGTKLDKANNLGISILDEEQFLHML 671


>gi|270159993|ref|ZP_06188649.1| DNA ligase [Legionella longbeachae D-4968]
 gi|269988332|gb|EEZ94587.1| DNA ligase [Legionella longbeachae D-4968]
          Length = 671

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/713 (37%), Positives = 403/713 (56%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I++ +++ + L+ +I  +D  YY   +P++ D EYD   R    +    P+L  ++ P  
Sbjct: 3   IDEIKEQAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTADSPT- 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLE 131
              ++GG    +   VTH  P LSL  +++ E+L+ F+ R+    +K D+    + FT E
Sbjct: 62  --QRVGGTPADAFAPVTHRQPMLSLSNVFSEEELQAFVKRVT---EKLDEPAQQLVFTCE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  + I YE G  VYAA RGDG +GE+++A I+ I  IP VL  N  P  IE+RGE
Sbjct: 117 PKLDGLAVNITYENGVLVYAATRGDGTTGENITANIKTIAAIPLVLRSNKPPRFIEIRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+ K+ F   N +   +G K +ANPRNAA+G LR+LNP     R L  + +G+G   + 
Sbjct: 177 VYMPKSGFEQYNKKAKELGEKTFANPRNAAAGSLRQLNPAVTANRPLAIYCYGIGACEDY 236

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E LQ ++ LGF V++  ++     G + YY  M + R  LP++IDG+VYKVD 
Sbjct: 237 RLPNTHWEQLQLLKELGFKVSSESKREVGIKGCLXYYCNMLARRDQLPFEIDGVVYKVDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  +R+PR+  +HKF   +  T +L +D Q+GRTG LTPVARL PVN+ G  +
Sbjct: 297 IALQQQLGFISRAPRFACAHKFPATEEITEILAVDFQVGRTGALTPVARLAPVNVAGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD+V+++RAG+VIP+VV +++ +R  D +  
Sbjct: 357 SNATLHNMDEIT-----------RKDIRIGDKVIIRRAGDVIPEVVSVVLEQRPADTKEI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+     G+ VA  RC GGL C AQ    + HF SR A +IEGLG 
Sbjct: 406 CLPLKCPVCDSDVVRE----EGEAVA--RCIGGLFCKAQLKRMMWHFASRKAMHIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++      D      +P D++ L        + + N+   G+ S  NL  ++   +  
Sbjct: 460 VLIEQLV---DEGIVRHLP-DLYRL------DVSTLANLPRMGEKSAKNLLQALEHSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF+++LGIR +G   AR LA+++           +I A +N     L+ +  +G + 
Sbjct: 510 TLSRFLYALGIREIGEASARVLAEHF----------GDIEAISNATEADLMSLEDMGPVG 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A  IV F+    N+  ++ LL E+    P I + ++N    +  K +V TGTL  + R +
Sbjct: 560 AANIVHFFAQTHNLQVIQHLL-ELGIHWPKIEKKQQNKEHPLFGKTVVLTGTLNTLSREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  +  LGA VS  +S KTD +I G   G+KL+KA  LG+ I++EEQFL +L
Sbjct: 619 AKAKLLILGAKVSGSVSAKTDYVIAGIEAGTKLDKANNLGISILDEEQFLHML 671


>gi|116748867|ref|YP_845554.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB]
 gi|116697931|gb|ABK17119.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB]
          Length = 694

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/713 (37%), Positives = 388/713 (54%), Gaps = 59/713 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A   + +L +EI +H+  YY   +P I D  YD L R    +  ++P L     P+ P
Sbjct: 24  EKAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALI---TPDSP 80

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G           H+IP LSLE   +  ++ +F  R+ +    + D  + F  EPK+
Sbjct: 81  TQRVGAAPAEKFLPFPHTIPMLSLENAMSEAEVFEFARRVRKILGDRGD--VDFMAEPKM 138

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----SLNIPEIIEVRG 189
           DG  + + YE G+   A  RGDG+ GEDV+   + I  IP  L       + P  I VRG
Sbjct: 139 DGLAVELVYENGELTGAGTRGDGYVGEDVTRNAKTIRAIPLKLYAGAGGASPPARIAVRG 198

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+ + DF ALN      G   +ANPRNAA+G LR+L+P+    R L  F +G+G+ S 
Sbjct: 199 EVYMDRKDFAALNRSREQAGEPLFANPRNAAAGSLRQLDPSVTAARSLKAFFYGVGEVSG 258

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q + L+++R  G PVN   R   +    VS+YNE+ + R  LP++IDG+V KV+ 
Sbjct: 259 YRFKTQAQTLEQLRRWGLPVNPLSRVCPSIEDAVSFYNEIAAGRDALPFEIDGVVVKVNS 318

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+ LGE++RSPRW I++KF+  QA TR+LDI +Q+GRTG+LTPVA LEPV +GG  +
Sbjct: 319 IEWQEMLGEKSRSPRWAIAYKFSPHQARTRVLDIKVQVGRTGVLTPVAELEPVTVGGVTV 378

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN+D ++            +DIRV D+V+V+RAG+VIP+VV++I   R    + F
Sbjct: 379 RRATLHNQDEVE-----------RKDIRVRDQVMVRRAGDVIPEVVEVIGEARTGGEEVF 427

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C S VVR   P+     A HRC     C AQ    L+HF SRDA NIEGLGK
Sbjct: 428 QMPGQCPSCGSEVVR--LPEE----AVHRCL-NRNCPAQIKASLRHFASRDAMNIEGLGK 480

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +            +   +D++ L      S   +E + GF   S  NL +SI + +  
Sbjct: 481 NIVSMLVDRG----IVESVSDLYRL------SVETLEQLPGFAGKSSRNLVESIERSKKT 530

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L  F+++LGI HVG+ +AR LA+ +            + A        L+ V  VG+++
Sbjct: 531 NLADFLYALGIYHVGSHVARLLAERF----------GTLDAVRRASVEELMSVNGVGEVV 580

Query: 609 AQAIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           A+++V ++  P N   VE+LL          P  G     V +    K +VFTG L  + 
Sbjct: 581 ARSVVHYFSLPANRTLVESLLSAGLEMAATEPEAG----PVDAFWNGKTVVFTGALSSMT 636

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R  A       GA VS  +SRKTDI++ G +PGSK+EKA+QLG+ I++E +FL
Sbjct: 637 RSNAAALTASRGARVSDSVSRKTDIVVAGADPGSKVEKARQLGITILDEREFL 689


>gi|167581473|ref|ZP_02374347.1| DNA ligase, NAD-dependent [Burkholderia thailandensis TXDOH]
          Length = 691

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 269/729 (36%), Positives = 408/729 (55%), Gaps = 59/729 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  S  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE+      V H  P LSL   ++ +D+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLVGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + +IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G    +        +L     LG PVN          G++ +++ + + R +LPYD
Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C SRV R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S       ++ I+  + D+   L
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGS-------LDPIMDASIDE---L 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE------VSPSIGRHEKNVSSEIENKKL 652
           + V  VG I+A++I +F+    N   +E L  +        P   R  + V   +  K +
Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGV---LAGKTV 620

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E 
Sbjct: 621 VLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEA 680

Query: 713 QFLFLLQQY 721
               LL+ +
Sbjct: 681 GMHKLLEGH 689


>gi|89075460|ref|ZP_01161871.1| DNA ligase [Photobacterium sp. SKA34]
 gi|89048732|gb|EAR54303.1| DNA ligase [Photobacterium sp. SKA34]
          Length = 670

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/695 (36%), Positives = 405/695 (58%), Gaps = 49/695 (7%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
           YH   YY    P I D+EYD + ++   I    P+    + P+    ++GG       +V
Sbjct: 18  YHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTVDSPS---QRVGGAALEGFTQV 74

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H I  LSL+  +N +DLR F  R+    + +   +  +  EPK+DG  +++ YEKG  V
Sbjct: 75  KHEIAMLSLDNAFNDDDLRAFQKRLQD--RLRSGATFSYCCEPKLDGLAVSLMYEKGVLV 132

Query: 150 YAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
            AA RGDG +GE+++  +R I  IP ++   + PE +EVRGEV++ K  F  LN + +  
Sbjct: 133 QAATRGDGATGENITHNVRTIRAIPLKLQGDDWPERLEVRGEVFMPKKGFEELNAKALKK 192

Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQKMRCLGF 266
           G K +ANPRNAA+G LR+L+P    TR L+F+ + +G       A  QYE L +++  G 
Sbjct: 193 GDKAFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVDGRELANTQYERLCQLKAWGL 252

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           P+   +R+ ++   +++Y+  +   R +L Y+IDG+V KVD+   Q+QLG  AR+PRW I
Sbjct: 253 PMCPEIRKVDSIEEVIAYHQNIGEKRQSLGYEIDGVVIKVDDVDTQQQLGFVARAPRWAI 312

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NATLHN D         
Sbjct: 313 AYKFPAQEEMTTLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNAD--------- 363

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
           +V R G  + +GD V+++RAG+VIP++  ++ + R  +AQ   FP+ CP+CQS+V R   
Sbjct: 364 EVARLG--VMIGDTVIIRRAGDVIPQIASVVESRRPANAQAIVFPTECPVCQSKVER--- 418

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
              G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G G++ ++     E     +  
Sbjct: 419 -IEGEAVA--RCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDRE----MVTT 471

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           PAD+F     + T   ++      G  S   L D++N  +  +L RFI+SLGIR VG   
Sbjct: 472 PADLFKFSAGEVTVLERM------GPKSAQKLVDALNASKLTTLPRFIYSLGIREVGEAT 525

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A +LA Y+ + ++ +Q   +           LI VP VG I+A  I  F++   N+  V 
Sbjct: 526 AANLANYFETLESISQATKD----------QLIEVPDVGGIVAAHIFNFFREEHNMVVVN 575

Query: 627 ALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
             L+EV    P I + +++V   ++ K +V TG+L ++ R  A+  + +LGA V+  +S+
Sbjct: 576 E-LQEVGIHWPEIEKIDEDVELPLDGKVVVLTGSLSQLTRSDAKAALQKLGAKVTGSVSK 634

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           KTD+++ G+  GSKL KAQ+LG++I +E++ + L+
Sbjct: 635 KTDLLVAGEAAGSKLTKAQELGIEIWDEQKLVDLM 669


>gi|241668131|ref|ZP_04755709.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876666|ref|ZP_05249376.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842687|gb|EET21101.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 678

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/716 (37%), Positives = 409/716 (57%), Gaps = 56/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L+  Q +  +  L + +      Y+   KP+I DS+YD L R    +    P L  S 
Sbjct: 12  KTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDLVDDNPQLKPS- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             N  L+++GG++      + H     SL  ++++E+LR F  +I        +  I   
Sbjct: 71  --NSVLDRVGGDVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI--------EYDIELE 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVR 188
            EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L+  N PE +EVR
Sbjct: 121 CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVR 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  + +G+G  S
Sbjct: 181 GEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFS 240

Query: 248 EIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           + F   + Q+E++  ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+K
Sbjct: 241 KDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGLVFK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+   LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG
Sbjct: 301 VNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGG 360

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R PDA
Sbjct: 361 VIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVVKSLSEYRKPDA 409

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           Q    P+ CP+C S  + ++N +     A +RCTGG  C AQ  ERLKHFVSR A +I+ 
Sbjct: 410 QMVEMPTNCPVCDS-TIENINDQ-----AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDK 463

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++    ++     I+ PADI+ L   Q T   ++      G  S  N+ DSI K 
Sbjct: 464 LGAKLIEQLVAAD----LIKYPADIYKLNFEQLTGLERM------GAKSSQNVLDSITKS 513

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SL RFIF++GI+ VG   + +LA ++ S ++F +            +  LI +  +G
Sbjct: 514 KEPSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------KFEQLIEINDIG 563

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQ 662
           +IIA+ IV F+Q+  NI  V+ LL   S +I   EK   +  E   NK +V TGT +   
Sbjct: 564 EIIAKNIVSFWQDSLNIQIVDELLGN-SINIQNPEKIEQAHNESFTNKTIVITGTFENYN 622

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ LGV+++ EE    LL
Sbjct: 623 RTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLIKAQDLGVEVIFEEDLQNLL 678


>gi|227328979|ref|ZP_03833003.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 684

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/718 (35%), Positives = 409/718 (56%), Gaps = 51/718 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E   +  A   ++ L + + +H+  Y+    P I D EYD L +   ++  A P+L  S+
Sbjct: 7   EPAEVNVAALRVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKSLEAAHPELVTSD 66

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P     ++G     +  +V H +P LSL+ +++ E    F  RI    +  DD  + F 
Sbjct: 67  SPT---QRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFC 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188
            E K+DG  +++ YE+G  V AA RGDG +GE++++ IR +  IP R+   NIP  +EVR
Sbjct: 122 CELKLDGLAVSLLYEEGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGDNIPRRVEVR 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-T 246
           GEV++  + F  LN+E    G K +ANPRNAA+G LR+L+P    TR L FF +G+G   
Sbjct: 182 GEVFMKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITATRPLTFFCYGVGLLE 241

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             +     +E L + +  G PV++ ++       ++ +Y +++  RS+L +DIDG+V KV
Sbjct: 242 GGVLPASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVKV 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D   LQ++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 302 DSLELQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGV 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHN D I+ L            +++GDRV+V+RAG+VIP++V I+ +ER    +
Sbjct: 362 IVSNATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVR 410

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+ V   RCT GL C AQ+ E LKHFVSR A ++EG+
Sbjct: 411 PILFPAACPVCGSDVER----VEGEAVT--RCTAGLICGAQRKEALKHFVSRRALDVEGM 464

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     ++ PAD+F L     T   ++      G  S TNL +++ K +
Sbjct: 465 GDKIIDQLVEKE----YVKTPADLFRLSAGIMTGLDRM------GPKSATNLVNALEKAK 514

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RF+++LGIR VG   A +LA ++ S       +  + A + D   +L+ VP VG 
Sbjct: 515 STTLARFLYALGIRDVGESTAANLAAHFGS-------LEALFAADED---ALLEVPDVGK 564

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQK 660
           ++A  +  F +   N   +  L      +I   E      + + S    K +V TG+L  
Sbjct: 565 VVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNVEEIDSPFAGKTVVLTGSLSI 624

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 625 LSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLL 682


>gi|88861394|ref|ZP_01136024.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
 gi|88816660|gb|EAR26485.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
          Length = 673

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 260/713 (36%), Positives = 416/713 (58%), Gaps = 48/713 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E    ++++L+ ++  ++  YY    P + DSEYD + R   A+   +P    ++ P+  
Sbjct: 3   ESVLSQIAALKVQLEEYNYQYYVLDNPSVPDSEYDRVMRELIALETQYPQFLSADSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+GGE   S  +V H +P LSL+  ++  + R F  R+    + KD  ++ F  EPK+
Sbjct: 61  -QKVGGEALGSFSQVQHLVPMLSLDNAFDETEFRSFNKRLQD--RLKDTTTLTFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  ++I Y+ G  V AA RGDG +GE+++  ++ I  +P ++   +IP  +EVRGEV++
Sbjct: 118 DGLAVSILYQDGVLVQAATRGDGQTGENITENVKTIRNVPLKLRGESIPHRLEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEIF 250
               F  +N+  I    K +ANPRNAA+G LR+L+ + IT  R L F+ +G+G     + 
Sbjct: 178 DSAGFAKMNELAIKNDGKVFANPRNAAAGSLRQLD-SKITAKRPLMFYAYGMGIIEGGVV 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +  LQ +   G P++   +        ++YY ++ + RS L Y+IDG+V KV++ +
Sbjct: 237 PDDHFAQLQALGDWGLPMSPETKLVTGVDDALAYYQDIMNRRSQLKYEIDGVVIKVNDKA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  AR+PRW I+ KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++N
Sbjct: 297 LQQTLGFVARAPRWAIAFKFPAQEEMTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D I+ L            +++GD V+++RAG+VIP++  +++ ER  DA+   F
Sbjct: 357 ATLHNQDEIERL-----------GVKIGDTVIIRRAGDVIPQITQVVLAERKTDAKDIVF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+CQS+V R +    G+ VA  RC+GGL C AQ+ E +KHFVSR AF+I+G+G + 
Sbjct: 406 PSNCPVCQSKVERTV----GEAVA--RCSGGLVCGAQRKEAIKHFVSRKAFDIDGMGDKI 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + E     I  PA+IFTL++        +E++   G  S   L  +I   +  +L
Sbjct: 460 VEQLVERE----LIHTPAEIFTLRQGH------LESLERMGPKSAEKLVAAIGNAKQTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGIR VG   A +LA +YL+       ++ I+A + D   SL  V  VG+I+A+
Sbjct: 510 ARFLYSLGIREVGEATALNLANHYLT-------LDAIMAASVD---SLQEVADVGEIVAK 559

Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +  F++   N   V+AL+   ++ +    +      +     V TGTL ++ R  A+  
Sbjct: 560 HVNFFFREAHNRAVVDALIAAGITWAALEPKSEAEQPLAGLTYVLTGTLLQMGRSDAKNR 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  LGA VS  +S KTD ++ GD  GSKL KAQ+LG+K++ E+  + LL QYN
Sbjct: 620 LQALGAKVSGSVSAKTDALVAGDKAGSKLTKAQELGIKVLFEDDLIALLAQYN 672


>gi|323499974|ref|ZP_08104932.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
 gi|323314991|gb|EGA68044.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
          Length = 669

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/707 (36%), Positives = 399/707 (56%), Gaps = 49/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +++L+ L + + YH   YY    P I D+EYD L R    +    PDL   + P+    +
Sbjct: 6   QEKLNQLRETLHYHGVKYYVEDSPEIPDAEYDRLMRELMELESQHPDLMSLDSPS---QR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKIDG 136
           +GG        V H IP LSL+  ++  +L  F  R+  R    K D    F  EPK+DG
Sbjct: 63  VGGAALDGFGSVNHEIPMLSLDNAFDDAELESFNKRMADRIPSAKFD---VFCCEPKLDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             +++ YE G  V AA RGDG +GE+++  +R I  IP ++     PE IEVRGEV++ K
Sbjct: 120 LAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLQGQGWPERIEVRGEVFMPK 179

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAKG 253
             F  LN++ +  G K + NPRNAA+G LR+L+     TR L+F+ + +G       +  
Sbjct: 180 AGFDKLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVQGATLSSS 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE   +++  G P+    ++ +    + +YY ++   R  LPY+IDG+V KVD+ +LQ+
Sbjct: 240 HYERFLQLKGWGLPMCPETKRVSGLDEVKAYYQDILQRREALPYEIDGVVIKVDDIALQE 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATL
Sbjct: 300 QLGFVARAPRWAIAYKFPAQEELTTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + +GD V+++RAG+VIP++V ++V+ R   A+   FP+ 
Sbjct: 360 HNADEIERL-----------SVMIGDTVVIRRAGDVIPQIVSVVVDRRPDSAREIVFPAL 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQS+V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A +++GLG++ ++ 
Sbjct: 409 CPVCQSQVER----IEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIEQ 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L      S   I  +   G  S  N+ D++N+ +  +L RF
Sbjct: 463 LVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALNQSKQTTLPRF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++SLGIR VG   A +LA+++ S Q   +  +            LI V  +G+I+A  I 
Sbjct: 513 LYSLGIREVGEATAANLAQHFKSLQAVTKATHE----------ELIAVSDIGEIVASHIT 562

Query: 614 EFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+    N   +  LL++    P I   +++    +  K +V TG+L ++ R  A+  + 
Sbjct: 563 AFFAQESNQQVIGQLLEQGINWPEIEERDESTPQPLAGKTVVLTGSLSQLSRSDAKAALQ 622

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            LGA V+  +S+KTDI+  G+N GSKL KAQ LGV+I  E+  + L+
Sbjct: 623 DLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGVEIRTEQDLIDLI 669


>gi|197336238|ref|YP_002156719.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11]
 gi|254781450|sp|B5FGU7|DNLJ_VIBFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197317728|gb|ACH67175.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11]
          Length = 668

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 261/714 (36%), Positives = 409/714 (57%), Gaps = 54/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SIEQ    L  L+Q+++YH   YY    P + D+EYD + +   +I    P+L   + P
Sbjct: 1   MSIEQT---LDELKQQLNYHAYRYYVEDSPELPDAEYDRMMQELLSIESEHPELVTVDSP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GGE      ++ H IP LSL+  ++ E+L  F  R+      K  +   F  E
Sbjct: 58  S---QRVGGEALDGFTQIQHEIPMLSLDNAFSDEELEAFEKRMNDRLISKPVS--LFCCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  +++ Y  GK V A  RGDG +GE+++  +R I  IP  L     P  +EVRGE
Sbjct: 113 PKLDGLAVSLLYVNGKLVQAGTRGDGTTGENITENVRTIRCIPLTLQGEGWPTRLEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTS 247
           V++ K  F ALN+  +  G KP+ANPRNAA+G LR+L+     TR L+F+ + +G  +  
Sbjct: 173 VFMPKAGFEALNERALKRGEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVIEGG 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+     Y+   +++  G P+    +Q  +   + +YY ++   R  L Y+IDG+V KVD
Sbjct: 233 EL-ETSHYQRFVQLKSWGLPMCEETKQCYSLTEVKAYYKDILKRRDALKYEIDGVVIKVD 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  
Sbjct: 292 DIALQEQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I  L            + +GD V+++RAG+VIP++V ++   R  D++ 
Sbjct: 352 VSNATLHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKA 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             +P+ CP+C S + R      G+ V   RC  GL C AQ+ E LKHFVSR A +++GLG
Sbjct: 401 IVYPTHCPVCGSNLER----VEGEAVT--RCGAGLVCQAQRKEALKHFVSRKALDVDGLG 454

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     +  PAD+F L     T   ++      G  S  N+ D++NK + 
Sbjct: 455 DKVVEQLVDKE----MVETPADLFKLSAGVLTVLERM------GPKSAQNVVDALNKAKA 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF++SLGIR VG   A +LA ++ + +          A     +  LI V  VGDI
Sbjct: 505 TTLPRFLYSLGIREVGEATAANLAAHFYTLE----------AIQVATFEQLIEVSDVGDI 554

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +A+ ++ F+  P N   ++  L+E+    P I   +++V   +  K +V TGTL K++R+
Sbjct: 555 VAKHVLNFFAEPHNKTVIDD-LQEMGIHWPEIKALDESVPQPLAGKVVVLTGTLHKLKRN 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+  + +LGA V+  +S+KTDI+  G+  GSKL KA++LGV++MNEEQ + LL
Sbjct: 614 EAKAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKAEELGVEVMNEEQLIELL 667


>gi|167619582|ref|ZP_02388213.1| DNA ligase, NAD-dependent [Burkholderia thailandensis Bt4]
          Length = 691

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/729 (36%), Positives = 408/729 (55%), Gaps = 59/729 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  S  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE+      V H  P LSL   ++ +D+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + +IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + + DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRMLDVRGEVLMFRRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G    +        +L     LG PVN          G++ +++ + + R +LPYD
Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C SRV R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S       ++ I+  + D+   L
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGS-------LDPIMDASIDE---L 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE------VSPSIGRHEKNVSSEIENKKL 652
           + V  VG I+A++I +F+    N   +E L  +        P   R  + V   +  K +
Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGV---LAGKTV 620

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E 
Sbjct: 621 VLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEA 680

Query: 713 QFLFLLQQY 721
               LL+ +
Sbjct: 681 GMHKLLEGH 689


>gi|261868202|ref|YP_003256124.1| NAD-dependent DNA ligase LigA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413534|gb|ACX82905.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 670

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/708 (37%), Positives = 412/708 (58%), Gaps = 58/708 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L + + +H+  Y+    P I DSEYD L  +  A+    P+L  ++ P     +
Sbjct: 6   QQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPT---QR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G        ++ H IP LSL+  ++ E+   F+ RI        +  + F  EPK+DG 
Sbjct: 63  VGARPLSEFAQIRHEIPMLSLDNAFSNEEFFSFVKRIQDRLALVPE-PLTFCCEPKLDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            ++I Y  G    AA RGDG +GED++  IR I  IP ++L+ N P  +EVRGEV++   
Sbjct: 122 AVSILYVNGVLSQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPHA 181

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSEIFAKG 253
            F  LN+  +  G K +ANPRNAA+G LR+L+P   ++    LN +  G+ +  E+    
Sbjct: 182 GFERLNERALEHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVEL-PPT 240

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E LQ ++ +G PVNN ++  +    ++++Y  + + RS+L YDIDG V K+++ +LQ+
Sbjct: 241 HFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQ 300

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +++PRW I++KF  ++  TRLLD++ QIGRTG +TPVA+LEPV++GG  ++NATL
Sbjct: 301 RLGFISKAPRWAIAYKFPAEEVRTRLLDVEFQIGRTGAVTPVAKLEPVSVGGVTVSNATL 360

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D IK L            I +GD VL++RAG+VIP+V+  +V++     +P  FP+ 
Sbjct: 361 HNNDEIKRL-----------GISIGDIVLIRRAGDVIPQVIK-LVHKAKKGNKPIVFPTH 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S ++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+ +G + ++ 
Sbjct: 409 CPVCDSLIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDSVGGKLIEQ 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     I  PAD+F L     T+ T++E +   G  S  N   S+ K +N +L RF
Sbjct: 463 LVDRE----LIHTPADLFKLDL---TTLTRLERM---GPKSAENALASLEKAKNTTLARF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG   A +LA ++ + +          A  N D   L +VP VG+++A  I 
Sbjct: 513 IFALGIRDVGEATALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKAQ 667
            F++   N+  VE L+ +     G H + V  +       + K +V TGTL ++ R+ A+
Sbjct: 563 VFWREAHNVAVVEDLIAQ-----GVHWETVDVQEVKENPFKGKTVVLTGTLSQMGRNDAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
             + QLGA VS  +S KTD +I G+  GSKL KA +LGV++++EE+FL
Sbjct: 618 ALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFL 665


>gi|330817444|ref|YP_004361149.1| DNA ligase [Burkholderia gladioli BSR3]
 gi|327369837|gb|AEA61193.1| DNA ligase [Burkholderia gladioli BSR3]
          Length = 691

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/727 (36%), Positives = 400/727 (55%), Gaps = 60/727 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  +  Q  +  + L  E+   +  YY   +P + D+EYD L R    I    PDL  
Sbjct: 5   PVEPPA-SQPSERAAWLRNELERANHAYYVLDQPDLPDAEYDRLFRELQQIEAEHPDLI- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--- 124
              P+ P  ++GGE       V H  P LSL   ++ ED+  F  R+     K   +   
Sbjct: 63  --TPDSPTQRVGGEAATGFTPVVHDAPMLSLNNGFSDEDIAAFDKRVADALDKAPADLAG 120

Query: 125 ----SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
                + +  E K DG  I++RYE G+FV AA RGDG +GEDV+  +R I +IP  L   
Sbjct: 121 TAIDPVEYACELKFDGLAISLRYEHGRFVQAATRGDGTTGEDVTENVRTIRSIPLTLKGK 180

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLN 237
           N P +++VRGEV + K DF  LN       ++ +ANPRNAA+G LR+L+ + IT  R L+
Sbjct: 181 NPPALLDVRGEVLMYKRDFARLNQRQREAEQREFANPRNAAAGSLRQLD-SKITAQRPLS 239

Query: 238 FFVHGLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           FF +G+G             +L      G PVN          G++++++++   R  LP
Sbjct: 240 FFAYGIGVLEGATMPDTHSGLLDWYAGFGLPVNRERAVVKGAEGLLAFFHKVGEQREALP 299

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           YDIDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A TRLL I++Q+GRTG +TPVA
Sbjct: 300 YDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTRLLAIEVQVGRTGAITPVA 359

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           RLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  
Sbjct: 360 RLEPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSA 408

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +++ R  DA  F  P+ CP+C SR+ R   P+     A  RCTGGL C AQ+ + L HF 
Sbjct: 409 LLDRRPADAAEFVMPTECPVCGSRIER--LPEE----AIARCTGGLFCPAQRKQALWHFA 462

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
            R A +I+GLG++ +D   +       +R PAD+F L          +  +  F D S  
Sbjct: 463 QRRALDIDGLGEKIIDQLVEQN----LVRTPADLFHL------GFATLAALDRFADKSAQ 512

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL DS+ K R+ +L RFI++LGIRHVG   A+ LAK++ S Q         +   ND   
Sbjct: 513 NLLDSLEKARHTTLGRFIYALGIRHVGESTAKDLAKHFGSLQPIMDATTEQLLEVND--- 569

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKL 652
                  VG ++A+++ +F+    N   +  L ++V     P   R  + V   +  K +
Sbjct: 570 -------VGPVVAESLHQFFAEEHNRTVIAQLREKVDWPEGPPAPREPQGV---LAGKTV 619

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R +A+  +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+
Sbjct: 620 VLTGTLPTLGRDEAKALLEAAGAKVTGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDED 679

Query: 713 QFLFLLQ 719
               LL+
Sbjct: 680 GMHLLLK 686


>gi|167837047|ref|ZP_02463930.1| DNA ligase, NAD-dependent [Burkholderia thailandensis MSMB43]
          Length = 691

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 267/729 (36%), Positives = 410/729 (56%), Gaps = 59/729 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  +  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQQIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE+      V H  P LSL   ++ +D+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEVAGGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + +IP  L   +
Sbjct: 121 VTEPVEYACELKFDGLAISLRYEGGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGRH 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G    +   G +  +L     LG PVN          G++ +++ +   R +LPYD
Sbjct: 241 AYGIGVLDGVEMPGTHSGLLDWYETLGLPVNRERAVVRGAAGLLGFFHSVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S       ++ ++  + D+   L
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGS-------LDPVMDASIDE---L 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE------VSPSIGRHEKNVSSEIENKKL 652
           + V  VG I+A++I +F+    N   +E L  +        P   R  + V   +  K +
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAKGKVTWPEGPPAPRAPQGV---LAGKTV 620

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E 
Sbjct: 621 VLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEA 680

Query: 713 QFLFLLQQY 721
               LL+ +
Sbjct: 681 GMHKLLEGH 689


>gi|170692136|ref|ZP_02883299.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
 gi|170142566|gb|EDT10731.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
          Length = 693

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/705 (37%), Positives = 395/705 (56%), Gaps = 49/705 (6%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+   +  YY   +P + D+EYD L +  ++I    PDL     P+ P  ++GGE  
Sbjct: 26  LRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAEHPDLIV---PDSPTQRVGGEAA 82

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW---QKKDDNSIFFTLEPKIDGTMIT 140
                V H  P LSL   +  ED+  F  R+        K+    + +  E K DG  I+
Sbjct: 83  SGFEPVVHDQPMLSLNNGFADEDIIAFDKRVGDALGNNAKEPPVPVDYATELKFDGLAIS 142

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           +RY  G FV AA RGDG +GE+V+  IR + +IP R+    +P I++VRGEV + K DF 
Sbjct: 143 LRYVDGVFVQAATRGDGATGENVTENIRTVRSIPLRLKGKRVPHILDVRGEVLMFKRDFE 202

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY-EM 257
            LN+   A G K +ANPRNAA+G LR+L+P     R L+FF +G+G    I     + E+
Sbjct: 203 RLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGIEMPATHSEL 262

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L   + LG PVN+         G++++++ +   R  LPYDIDG+VYKV+    Q+ LG 
Sbjct: 263 LDWYKELGLPVNSERAVVKGAEGLLAFFHAVGEKRDKLPYDIDGVVYKVNRRDEQEALGF 322

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLHNED
Sbjct: 323 VSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNED 382

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA+ F  P+ CP+C
Sbjct: 383 EVR-----------RKDIRIGDTVIVRRAGDVIPEVVSALIDRRPDDAREFVMPTHCPVC 431

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S + R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D   + 
Sbjct: 432 GSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQ 485

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +R PAD+F L        + +  +  F D S  NL DS+ K R+ +L RFI++L
Sbjct: 486 N----LVRTPADLFNL------GFSTLAQLDRFADKSAQNLLDSLEKARHTTLSRFIYAL 535

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG   A+ LAK++ S     +     +   ND          VG ++A++I +F+ 
Sbjct: 536 GIRHVGESTAKDLAKHFGSLDPIMEASVEALLEVND----------VGPVVAESIHQFFA 585

Query: 618 NPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
              N   +E L    K   P      +     +  K +V TGTL  + R +A+E +   G
Sbjct: 586 EEHNRTVIEQLRAHGKVTWPEGPPAPRAPQGVLAGKTIVLTGTLPNLAREEAKEMLEAAG 645

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 646 AKVAGSVSKKTDYVVAGAEAGSKLVKAEELGIPVLDEDGMRKLLE 690


>gi|83720010|ref|YP_442546.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
 gi|257138755|ref|ZP_05587017.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
 gi|123753789|sp|Q2SX03|DNLJ_BURTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83653835|gb|ABC37898.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
          Length = 691

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/729 (36%), Positives = 407/729 (55%), Gaps = 59/729 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  S  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE+      V H  P LSL   ++ +D+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + +IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + + DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRMLDVRGEVLMFRRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G    +        +L     LG PVN          G++ +++ + + R +LPYD
Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  + 
Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVF 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C SRV R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S       ++ I+  + D+   L
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGS-------LDPIMDASIDE---L 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE------VSPSIGRHEKNVSSEIENKKL 652
           + V  VG I+A++I +F+    N   +E L  +        P   R  + V   +  K +
Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGV---LAGKTV 620

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E 
Sbjct: 621 VLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEA 680

Query: 713 QFLFLLQQY 721
               LL+ +
Sbjct: 681 GMHKLLEGH 689


>gi|170727191|ref|YP_001761217.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908]
 gi|254781418|sp|B1KJT5|DNLJ_SHEWM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169812538|gb|ACA87122.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908]
          Length = 670

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/711 (37%), Positives = 393/711 (55%), Gaps = 54/711 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A +E+  L + I+ H+  YY    P + D+EYD L  R   +    P L     P  P 
Sbjct: 2   HAIEEIKQLTETINEHNHSYYVEDSPSVPDAEYDRLINRLKQLEGENPHLCL---PTSPT 58

Query: 76  NKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            ++GG M L+ F ++TH  P LSL+ +++ E+   F  RI      K   +  F  EPK+
Sbjct: 59  QRVGG-MALAKFDQITHLKPMLSLDNVFSEEEFEAFYKRI----SDKTSEAPTFCCEPKL 113

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  ++I Y  G +  AA RGDG +GED+S  +R I +IP ++   N P ++EVRGEV +
Sbjct: 114 DGLAVSILYRDGVYERAATRGDGTTGEDISENVRTILSIPLKLRGDNFPPLLEVRGEVIM 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTSEI 249
            K  F ALND   A G K + NPRNAA+G LR+L+     +R L F+ + LG     +  
Sbjct: 174 PKKAFDALNDRARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETWA 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A   Y+ L ++R  GFPV+  V+Q      +V+YY ++ + R +L Y+IDG+V KVD  
Sbjct: 234 LADTHYDQLMQLRAWGFPVSAEVKQCGDVSSVVAYYTDIMTRRDSLDYEIDGVVIKVDSI 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q QLG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  ++
Sbjct: 294 EHQGQLGFVAKAPRWATAFKFPAQEEVTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVS 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            ++VGD V+V+RAG+VIP++V I+ ++R  DA+   
Sbjct: 354 NATLHNADEIARL-----------GVKVGDTVIVRRAGDVIPQIVAIVADKRPDDAREIE 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S V R      G+ VA  RCTGGL C AQ+ E +KHF SR A +I+G+G +
Sbjct: 403 FPDTCPVCNSMVER----VEGEAVA--RCTGGLFCEAQRKEAIKHFASRKALDIDGMGDK 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     +  PAD+F L      + + I  +   G  S TNL  +I   +  +
Sbjct: 457 VVEQLIDKE----LVESPADLFKL------TASAITMLDRMGMKSATNLVAAIEVAKTTT 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF++ LGIR VG   A +LA Y+ +                 D  S I+V  VG I+A
Sbjct: 507 FSRFLYGLGIREVGEATAANLANYFKTLDKLKAA----------DAESFIKVDDVGTIVA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           Q +  F+  P N+  V+ L++     P I    +  S  ++ +  V TGTL ++ R+ A+
Sbjct: 557 QHLTHFFAQPHNLEVVDKLIEAGVNWPEIEEVAEE-SLSLKGQTWVLTGTLTQLNRNDAK 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+ TD ++ G+  GSKL KAQ LGVK+++EE  L LL
Sbjct: 616 ARLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQDLGVKVIDEEALLQLL 666


>gi|56416472|ref|YP_153546.1| DNA ligase [Anaplasma marginale str. St. Maries]
 gi|81359291|sp|Q5PBN8|DNLJ_ANAMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56387704|gb|AAV86291.1| DNA ligase [Anaplasma marginale str. St. Maries]
          Length = 673

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/713 (37%), Positives = 406/713 (56%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQAR+ L+ L  ++ +HD  Y+    P + D +YD L +    +   FPD+++ +D   
Sbjct: 2   LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDISQYDDY-- 59

Query: 74  PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             + +G     S F KV H  P LSLE  + ++D+ KFITR+ RF + + D+ +  + E 
Sbjct: 60  -ADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG   +  Y  GK    A RG+GH GED++     +  +P  L  + PE++EVRGE+Y
Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQLD-SAPEVLEVRGEIY 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   DF  L       G   +ANPRNAA+G +R+LN   I    N         +  FA 
Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLN-QKIVEERNLSYVAYSAVNSTFAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L+++   GF  N  V   +     +++YN + + RS L YDIDG+VYKV+  + Q
Sbjct: 231 -QQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSTNFQ 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LG   +SPRW I+HKF   +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A+
Sbjct: 290 KLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRAS 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN + I+            +D+R+GD V+VKRAGEVIP+VVD+    R    Q F FPS
Sbjct: 350 LHNLNEIE-----------RKDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPS 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++ R+     G++  A RC   L+C AQ LER+KHFVSRD  NI GLG +Q++
Sbjct: 399 HCPSCGSKLHRE----PGEV--ALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQIE 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           FF         I   ADIF+L+ +        E+  G+G+ SV NL  +I     + L  
Sbjct: 453 FFCNHG----LIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLSN 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR +G   A+ +A++Y SY+N+ Q +  +   ++      +++  +G+    ++
Sbjct: 507 FIFALGIRFIGVGAAKLVAEHYRSYKNWHQAMLALTETHDT-----VQIRGLGEKSISSL 561

Query: 613 VEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             F+    N+  +E+L      L E SP+     +  SS I  K +VFTGTL+ + R +A
Sbjct: 562 KAFFSVQGNLEVLESLSAKLNILDEASPA-----QRGSSAISGKTVVFTGTLESMSRTEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +     LGA V+  +S  T +++ G NPGSK EKA  L V++++E+ ++ +++
Sbjct: 617 KLQAESLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVE 669


>gi|222474841|ref|YP_002563256.1| DNA ligase (ligA) [Anaplasma marginale str. Florida]
 gi|255003944|ref|ZP_05278745.1| DNA ligase (ligA) [Anaplasma marginale str. Virginia]
 gi|254781539|sp|B9KHN8|DNLJ_ANAMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222418977|gb|ACM49000.1| DNA ligase (ligA) [Anaplasma marginale str. Florida]
          Length = 673

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 263/713 (36%), Positives = 402/713 (56%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQAR+ L+ L  ++ +HD  Y+    P + D +YD L +    +   FPD+ + +D   
Sbjct: 2   LEQARRRLAGLNAKLRHHDMLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDDY-- 59

Query: 74  PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             + +G     S F KV H  P LSLE  + ++D+ KFITR+ RF + + D+ +  + E 
Sbjct: 60  -ADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG   +  Y  GK    A RG+GH GED++     +  +P  L  + PE++EVRGE+Y
Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQLD-SAPEVLEVRGEIY 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   DF  L       G   +ANPRNAA+G +R+LN   I    N         +  FA 
Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLN-QKIVEERNLSYVAYSAVNSTFAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L+++   GF  N  V   +     +++YN + + RS L YDIDG+VYKV+  + Q
Sbjct: 231 -QQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSINFQ 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LG   +SPRW I+HKF   +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A+
Sbjct: 290 KLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRAS 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN + I+            +D+R+GD V+VKRAGEVIP+VVD+    R    Q F FPS
Sbjct: 350 LHNLNEIE-----------RKDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPS 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++ R+          A RC   L+C AQ LER+KHFVSRD  NI GLG +Q++
Sbjct: 399 HCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQIE 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           FF         I   ADIF+L+ +        E+  G+G+ SV NL  +I     + L  
Sbjct: 453 FFCNHG----LIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLSN 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR +G   A+ +A++Y SY+N+ Q +  +   ++      +++  +G+    ++
Sbjct: 507 FIFALGIRFIGVGAAKLIAEHYRSYKNWHQAMLALTETHDT-----VQIRGLGEKSISSL 561

Query: 613 VEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             F+    N+  +E+L      L E SP+     +  SS I  K +VFTGTL+ + R +A
Sbjct: 562 KAFFSVQGNLEVLESLSAKLNILDEASPA-----QRGSSAISGKTVVFTGTLESMSRTEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +     LGA V+  +S  T +++ G NPGSK EKA  L V++++E+ ++ +++
Sbjct: 617 KLQAESLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVE 669


>gi|269959115|ref|YP_003328904.1| NAD-dependent DNA ligase [Anaplasma centrale str. Israel]
 gi|269848946|gb|ACZ49590.1| NAD-dependent DNA ligase [Anaplasma centrale str. Israel]
          Length = 673

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/714 (36%), Positives = 406/714 (56%), Gaps = 54/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQAR+ L+ L  ++ +HD  Y+    P + D +YD L +    +   FPD+ + +D   
Sbjct: 2   LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDDY-- 59

Query: 74  PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             + +G     S F KV H  P LSLE  + ++D+ KFITR+ RF + + D+ +  + E 
Sbjct: 60  -ADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG   +  Y  GK    A RG+GH GED++     +  +P  L  + PE++EVRGE+Y
Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQLD-SAPEVLEVRGEIY 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +   DF  L       G   +ANPRNAA+G +R+LN   +  R L++  +     +  FA
Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLNQKIVEERNLSYVAYS--AVNSTFA 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E+L+++   GF  N  V   +     V++YN + + RS L YDIDG+VYKV+  + 
Sbjct: 230 T-QQEILKQLDEWGFHTNKQVLFTDKIEEAVAFYNSVYTTRSALGYDIDGVVYKVNSINF 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK LG   +SPRW I+HKF   +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A
Sbjct: 289 QKLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN + I+            +D+R+GD V+VKRAGEVIP+VVD+    R    Q F FP
Sbjct: 349 SLHNLNEIE-----------RKDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C S++ R+          A RC   L+C AQ LER+KHFVSRD  NI GLG +Q+
Sbjct: 398 SHCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQI 451

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +FF         I   ADIF+L+ +        E+  G+G+ SV NL  +I     + L 
Sbjct: 452 EFFSNHG----LINGIADIFSLEEKLHGINLGTEH--GWGEKSVANLIAAIRNSATVRLS 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FIF+LGIR +G   A+ +A++Y SY+N+ Q +  +   ++      +++  +G+    +
Sbjct: 506 NFIFALGIRFIGVGAAKLVAEHYRSYKNWHQAMLALTETHDT-----VQIRGLGEKSISS 560

Query: 612 IVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +  F+    N+  +E+L      L E SP+     +  SS I  K +VFTGTL+ + R +
Sbjct: 561 LKAFFSVQGNLEVLESLSAKLNILDEASPA-----QRGSSAISGKTVVFTGTLESMSRTE 615

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+     LGA V+  +S  T +++ G NPGSK EKA  L V++++E+ ++ +++
Sbjct: 616 AKLQAESLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVE 669


>gi|148263373|ref|YP_001230079.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4]
 gi|190359259|sp|A5GA98|DNLJ_GEOUR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146396873|gb|ABQ25506.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4]
          Length = 672

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/708 (37%), Positives = 396/708 (55%), Gaps = 48/708 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + +  L +EI+ H+  YY   +P I D+EYD L R    +  A+PDL  ++ P   
Sbjct: 4   QAAERRIQELHKEINRHNYLYYVEDRPEINDAEYDLLLRELQQLEKAYPDLVTADSPT-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G        +VTH +P LSLE  +N E++  F  RI RF      + I +  EPK+
Sbjct: 62  -QRVGAAPLEKFSQVTHRMPMLSLENAFNEEEMHDFDERIKRFLGLAAGDEIEYVCEPKM 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVYI 193
           DG  + + YE G F   + RGDG+ GEDV+  +R + TIP  L++  P  + EVRGEVY+
Sbjct: 121 DGLAVELVYENGDFTVGSTRGDGYVGEDVTQNLRTVKTIPLSLAIATPPRLFEVRGEVYL 180

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251
               F  LN E    G  P+ANPRNAA+G LR+L+ + IT  R L+ F +  G       
Sbjct: 181 GLAPFQKLNVEREEAGDPPFANPRNAAAGSLRQLD-SRITARRPLSIFCYAAGSLEGHEF 239

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q ++L  +   G PVN  +R+ +   G+++YY+EM   R +LPY+IDG+V KVD F L
Sbjct: 240 TSQSDLLNTIPGWGLPVNPLIRKVSGIGGVLAYYHEMSEKRESLPYEIDGVVVKVDSFDL 299

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LGE+ RSPRW I+ KF  +QA T + +I  Q+GRTG++TPVA L PV + G +++ A
Sbjct: 300 QRELGEKTRSPRWAIAWKFPPRQAVTVVEEIVPQVGRTGVITPVAHLRPVEVSGVMVSRA 359

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN + ++            +DIR GD V+V+RAG+VIP VV +I  +R  D QP   P
Sbjct: 360 TLHNWEEME-----------KKDIRKGDTVVVERAGDVIPAVVKVITEKRKGDEQPLPIP 408

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S VV+      G++  A RC  GL+C AQ  E + HF SR A +I+G+G + +
Sbjct: 409 ANCPECGSEVVK----IPGEV--AVRCL-GLSCPAQIRETIIHFASRHAMDIDGMGDKYI 461

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   K       ++  AD++ L++       ++      GD    NL  +I   +   L 
Sbjct: 462 EQLLK----LGLVKNVADLYYLKKDDFMRFERM------GDKLAENLLGAIETSKQRELS 511

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIRHVG   A+ LA  + S +N        + H +++ L  IR   VG  +AQ+
Sbjct: 512 RFIYALGIRHVGEHTAKLLANAFGSMEN--------LEHASEEELLSIRE--VGPQVAQS 561

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I  F+ N  NI  ++ +    V PS+   EK V      K  VFTG L +  R  A+  V
Sbjct: 562 IRTFFHNRNNIEVIDRMFNAGVKPSV--EEKRVGGRFTGKTFVFTGALTRFTRDDAKRMV 619

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              G   +  +S+KTD ++ G   GSKL+KA+QLGVK++ E++FL +L
Sbjct: 620 ENEGGHAAGSVSKKTDFVVAGAEAGSKLDKARQLGVKVLTEDEFLAML 667


>gi|227114832|ref|ZP_03828488.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 684

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 260/719 (36%), Positives = 410/719 (57%), Gaps = 53/719 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E   +  A   ++ L + + +H+  Y+    P I D EYD L +   A+    P+L  S+
Sbjct: 7   EPAEVNAAALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTSD 66

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P     ++G     +  +V H +P LSL+ +++ E    F  RI    +  DD  + F 
Sbjct: 67  SPT---QRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFC 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188
            E K+DG  +++ YE G  V AA RGDG +GE++++ IR +  IP R+   NIP  +EVR
Sbjct: 122 CELKLDGLAVSLLYENGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGDNIPRRVEVR 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--K 245
           GEV++  + F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +
Sbjct: 182 GEVFMKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLE 241

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             E+ A   +E L + +  G PV++ ++       ++ +Y +++  RS+L +DIDG+V K
Sbjct: 242 GGELPAS-HWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   LQ++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G
Sbjct: 301 VDSLELQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAG 360

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHN D I+ L            +++GDRV+V+RAG+VIP++V I+ +ER    
Sbjct: 361 VIVSNATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETV 409

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P  FP+ CP+C S V R      G+ V   RCTGGL C AQ+ E LKHFVSR A ++EG
Sbjct: 410 RPIVFPAACPVCGSDVER----VEGEAVT--RCTGGLICGAQRKEALKHFVSRRALDVEG 463

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G + +D   + E     ++ PAD+F L     T   ++      G  S TNL +++ K 
Sbjct: 464 MGDKIIDQLVEKE----YVKTPADLFRLSAGIMTGLDRM------GPKSATNLVNALEKA 513

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +L RF+++LGIR VG   A +LA ++ S       +  + A + D   +L+ VP VG
Sbjct: 514 KSTTLARFLYALGIRDVGESTAANLAAHFGS-------LEALFAADED---ALLEVPDVG 563

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQ 659
            ++A  +  F +   N   +  L      +I   E      + + S    K +V TG+L 
Sbjct: 564 KVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNAEEIDSPFAGKTVVLTGSLS 623

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 624 ILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLL 682


>gi|290476106|ref|YP_003469005.1| DNA ligase [Xenorhabdus bovienii SS-2004]
 gi|289175438|emb|CBJ82241.1| DNA ligase [Xenorhabdus bovienii SS-2004]
          Length = 672

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 253/715 (35%), Positives = 410/715 (57%), Gaps = 51/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L R    +    P+L  ++ P  
Sbjct: 1   MESIIEKINKLRATLRHHEYLYHVMDAPEIPDAEYDRLLRELKVLEEQHPELITADSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H IP LSL+ +++ E    F  R+    + KD   + F  E K
Sbjct: 60  --QRVGAAPLTAFGQVRHEIPMLSLDNVFDEESYLAFDKRVRD--RLKDSRDLVFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++  +R I  IP R+   NIP  +E+RGEV+
Sbjct: 116 LDGLAVSLLYEDGELVQAATRGDGTTGENITVNVRTIHAIPLRLKGNNIPARVEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  LNDE    G K +ANPRNAA+G LR+L+P     R L F+ +G+G  +  E+
Sbjct: 176 MKQGGFEKLNDEARRKGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A   YE L + +  G PV++ V+       ++ +Y+ ++  R  L +DIDG+V KVD  
Sbjct: 236 PAS-HYERLMQFKQWGLPVSDNVKLCQGTQQVIDFYHNIEQQRPILGFDIDGIVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+ LG  A++PRW  + KFA ++  T + D++ Q+GRTG +TPVARL+PV + G +++
Sbjct: 295 ELQETLGFVAKAPRWATAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLKPVQVAGVIVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD V+++RAG+VIPKVV ++ ++R  ++Q   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVVIRRAGDVIPKVVGVVQDKRPAESQEVI 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP +CP+C+S    D+    G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G++
Sbjct: 404 FPEYCPVCRS----DIERVEGESVA--RCTGGLFCGAQRKEALKHFVSRRAMDVDGMGEK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     ++ PAD+F L      S  K+  +   G  S  N  D++ K +  +
Sbjct: 458 IIEQLVDKE----YVKTPADLFRL------SAGKLTGLERMGPKSAQNTIDALEKSKKTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RFI+SLGIR VG   A +L  ++++ +               D  +LI V  VG ++A
Sbjct: 508 FARFIYSLGIREVGEATAANLVAHFVTLEKL----------RAADTEALIAVQDVGGVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHK 665
             +V F+  P N   ++ L+  +     S+   + + V +    K +V TG+L ++ R +
Sbjct: 558 SHVVNFFNEPHNQTVIDDLIDNIGIYWESVETLQSDTVGNSFAGKTVVLTGSLNRLSRDE 617

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +T LGA V+  +S+KTD++I G+  GSKL KA +LG+++++EE+ L LL +
Sbjct: 618 AKDKLTALGAKVTGSVSKKTDLVIAGEAAGSKLAKATELGIEVIDEEEMLRLLGE 672


>gi|242238286|ref|YP_002986467.1| NAD-dependent DNA ligase LigA [Dickeya dadantii Ech703]
 gi|242130343|gb|ACS84645.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech703]
          Length = 684

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 262/732 (35%), Positives = 418/732 (57%), Gaps = 60/732 (8%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +++ +P+   S   A  ++ +L  ++ YH+  Y+    P I D+EYD L      +  
Sbjct: 1   MSEKKPMPMNDTS--AAAVQIDALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKLLEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A P+   S+ P     ++G         V H +P LSL+ +++ E  + F+ RI    + 
Sbjct: 59  AHPEWVTSDSPT---QRVGATPLAGFDNVQHEVPMLSLDNVFDAESFQAFVKRIGD--RL 113

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSL 179
           K D ++ F  E K+DG  +++ YE G  V AA RGDG +GE++++ IR I  IP R+   
Sbjct: 114 KSDEALRFCCELKLDGLAVSLLYEDGVLVRAATRGDGSTGENITSNIRTIGAIPLRLRGD 173

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNF 238
           NIP  +EVRGEV++    F ALN+E    G K +ANPRNAA+G LR+L+P     R L F
Sbjct: 174 NIPRRLEVRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTF 233

Query: 239 FVHGLG-KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           F +G+G           ++ L + R  G PV++ +R       ++++Y  ++++R TL +
Sbjct: 234 FCYGVGLMEGGSLPDSHWQRLMQFREWGLPVSDRIRLCTGGDEVLAFYQHVEAVRDTLGF 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V KVD+ +LQ++LG  AR+PRW ++ KF  ++  T L D++ Q+GRTG +TPVAR
Sbjct: 294 DIDGVVIKVDDLALQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVAR 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV + G +++NATLHN D I  L            I++GDRV V+RAG+VIP++V ++
Sbjct: 354 LEPVAVAGVIVSNATLHNADEIDRL-----------GIQIGDRVAVRRAGDVIPQIVSVV 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R  DA+P  FP+ CP+C S V R      G++V   RCTGGL C+AQ+ E LKHFVS
Sbjct: 403 LPDRPADARPVVFPTQCPVCGSDVER----VDGEVVT--RCTGGLFCAAQRKEALKHFVS 456

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A ++EG+G + +D   + E     ++ PA++F   R      T++E +   G  S  N
Sbjct: 457 RRALDVEGMGDKIIDQLVEKE----YVKTPAELF---RLDIGILTRLERM---GPKSAQN 506

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L ++++K ++ +  RF+++LGIR VG   A  LA ++            + A    D  +
Sbjct: 507 LVNALDKAKSTTFARFLYALGIRDVGEATAAGLAAHF----------GTLDALMTADVDT 556

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKN--------VSSEIE 648
           L +VP VG ++A  +  F     N    + +++E + P +G    +        + +   
Sbjct: 557 LQQVPDVGIVVATHVRHFLDEEHN----QQIIRELIGPEVGLRWPDPVVVDAGALDNPFA 612

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TG+L  + R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ LG+ +
Sbjct: 613 GKTVVLTGSLSLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQALGIDV 672

Query: 709 MNEEQFLFLLQQ 720
           ++E + + LL Q
Sbjct: 673 IDEVEMMRLLGQ 684


>gi|332184463|gb|AEE26717.1| DNA ligase [Francisella cf. novicida 3523]
          Length = 678

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/728 (37%), Positives = 410/728 (56%), Gaps = 65/728 (8%)

Query: 6   LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + P E  SI+    A+ EL +    L   +S     Y+   KPII DS+YD L R    +
Sbjct: 1   MTPNEFFSIKYHILAKPELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
               P    +   N  L+++GGE+      + H     SL  ++ IE+LR F  +I    
Sbjct: 61  VDDNPQFKPT---NSVLDRVGGEVLAGFETIKHKKKMTSLVNVFTIEELRDFYDKI---- 113

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL- 177
               +  I    EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L 
Sbjct: 114 ----EYEIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169

Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
           ++N PE +EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L
Sbjct: 170 TINPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229

Query: 237 NFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
             F +G+G  S+ F   + Q+E++Q +R  GF +++ +  A +F  +  Y+ +M   R+ 
Sbjct: 230 KLFSYGIGYFSKDFVHPETQFELMQLLRSFGFTISDNMFLAKSFSEVEEYHRKMSHQRAD 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDGLV+KV+   LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TP
Sbjct: 290 LAYDIDGLVFKVNNIKLQDTIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG +++NATLHN + IK            +DIRV DRV+V+RAG+VIP+VV
Sbjct: 350 VARLKPVAVGGVMVSNATLHNINEIK-----------RKDIRVSDRVIVRRAGDVIPEVV 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R PDAQ    P  CP+C S  + ++N +     A +RCTGG  C AQ  ERLKH
Sbjct: 399 KSLPQYRKPDAQIVEMPKNCPVCDS-TIENINDQ-----AIYRCTGGWHCQAQTTERLKH 452

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I+ LG + ++    ++     I+ PADI+ L   Q T   ++      G  S
Sbjct: 453 FVSRKAMDIDKLGAKLIEQLVAAD----LIKYPADIYKLNFEQLTGLKRM------GAKS 502

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N+ DSI K +  SL RFIF++GI+ +G   + +LA ++ S ++F +            
Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSEALANHFGSLESFREA----------K 552

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENK 650
           +  LI +  +G+I+A  IV F+Q+  NI  V+ LL       +P   + E+  +    NK
Sbjct: 553 FEQLIEINDIGEIMANNIVSFWQDSLNIQIVDELLANAINIQNPE--KIEQAHNESFTNK 610

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TGT +   R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV ++ 
Sbjct: 611 TVVITGTFENYNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVTVIL 670

Query: 711 EEQFLFLL 718
           E+    LL
Sbjct: 671 EQDLQNLL 678


>gi|308271402|emb|CBX28010.1| DNA ligase [uncultured Desulfobacterium sp.]
          Length = 674

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 260/708 (36%), Positives = 411/708 (58%), Gaps = 52/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K++ +L+ E+  H+  YY    P I D++YD + +    +   +P L+    P+ P  K+
Sbjct: 11  KKVENLKSELQKHNYHYYVMDDPQISDTQYDKMMQELIELEAKYPMLST---PDSPSMKV 67

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E      ++ HS+  LSL+  ++  D+  F  R+        D  I +T EPK+DG  
Sbjct: 68  GAEPVKKFEQIRHSVKMLSLDNAFSDSDILNFDRRVKEGLMA--DEQILYTAEPKMDGVA 125

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEVYI 193
           + + Y+ G+ V A+ RGDG +GED+++ ++ I ++P +L  N     IP  +E RGEV I
Sbjct: 126 VELVYKDGRLVSASTRGDGETGEDITSNVKTIRSVPLLLQQNKKEHIIPARLEARGEVII 185

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
           SK  F  LN++M++ G   +ANPRNAA+G LR+L+      R L  + +G+G+   I  K
Sbjct: 186 SKEGFKRLNEDMLSQGLALFANPRNAAAGSLRQLDSKVTAKRPLEIYFYGVGEVEGISCK 245

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++ L  ++ LG  +N  ++     + +  YY E++ +RS LPYDIDG+V KVD    Q
Sbjct: 246 SHWDWLYALKELGLRINPYIKPKININAVCKYYKELEQMRSGLPYDIDGMVVKVDSVQYQ 305

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG +ARSPRW +++KF   Q +T++LDI +Q+GRTG +TPVA LE VNIGG  ++ AT
Sbjct: 306 EQLGTKARSPRWAVAYKFKAIQETTKVLDILVQVGRTGAVTPVACLETVNIGGVNVSRAT 365

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I+            +DIR+GD VLV+RAG+VIP++V +I + R+     F  P 
Sbjct: 366 LHNEDEIR-----------NKDIRIGDTVLVQRAGDVIPEIVKVIDSARNGSEIIFCMPQ 414

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S+++RD   +   L+   RC    +C A+   +++HFVS+ AF+I+GLG++ ++
Sbjct: 415 NCPSCNSQLIRD---EKESLI---RCVNN-SCPAKTKAQIEHFVSKRAFDIDGLGEKLIN 467

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F   D  + +   ADIF L +       K+E +   G  S  NL+++I K +NI+  R
Sbjct: 468 QLF---DKKY-LSSYADIFYLDK------IKMEGLERMGLKSAGNLFEAIEKSKNINFAR 517

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGIRHVG  IA  LA  Y  Y+ F        +   DD   L  +  VG I+AQ+I
Sbjct: 518 FIYALGIRHVGEHIAEILASKYEKYEKFC-------SATYDD---LKNIKGVGPIVAQSI 567

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++F     N+  +E +L   S  I R+ +N  S+ ++ K  V TGTL+ + R++A   + 
Sbjct: 568 IDFLGREDNLNNIERMLN--SGVIIRYGENRKSTTLDGKIFVLTGTLESMTRNEAIIKIK 625

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G  +S  +S+KTD ++ G +PGSK+EKA+  GV+I++E +   + +
Sbjct: 626 SFGGKISESVSKKTDYLVAGKSPGSKIEKAKAAGVEIIDENKLKIMFE 673


>gi|152971289|ref|YP_001336398.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|166215815|sp|A6TC47|DNLJ_KLEP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150956138|gb|ABR78168.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 671

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 254/715 (35%), Positives = 412/715 (57%), Gaps = 52/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R+   +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K  + + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTDHLTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A     +LQ  +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  
Sbjct: 236 PASHSARLLQ-FKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   
Sbjct: 355 NATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+CQS V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCQSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA ++ + +   Q               L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
                F+    N   +  LL E     +P + + E+ + S    K +V TG+L ++ R  
Sbjct: 558 THTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEE-IDSPFAGKTVVLTGSLSQLSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|329912476|ref|ZP_08275756.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545605|gb|EGF30768.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
          Length = 679

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 269/697 (38%), Positives = 398/697 (57%), Gaps = 53/697 (7%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           H   YY    P+I D++YD L R  +A+  + P+L  ++ P     ++G        +V 
Sbjct: 23  HAHAYYVLDNPVIPDADYDLLFRELEALEASHPELVTADSPT---RRVGAPPLPEFVQVR 79

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           HS+P LSL   +  ED+  F  R+    Q   +  + +  E K DG  I +RYE G  V 
Sbjct: 80  HSVPMLSLSNGFADEDVIGFDRRVRDGLQIAGE--VAYATELKYDGLAINLRYENGVLVE 137

Query: 151 AALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
           AA RGDG +GE+V+  IR I  IP R+ +   P II+VRGEV + K DF +LN    A G
Sbjct: 138 AATRGDGSTGENVTVNIRTIRGIPLRLHTDTPPAIIDVRGEVLLYKADFASLNARQRAAG 197

Query: 210 RKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYE-MLQKMRCLGF 266
            K +ANPRNAA+G LR+L+ + IT  R L FF +G+G    +     +  +L   R LG 
Sbjct: 198 LKEFANPRNAAAGSLRQLD-SRITAQRALRFFAYGIGTLEGVAMPDSHSGLLDWYRALGI 256

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           PV +  +  +   G++ +Y E+ + R++LPY+IDG+VYKVD+   Q+QLG  AR+PR+ +
Sbjct: 257 PVCDERKVVHGAAGLLDFYREIGAKRASLPYEIDGVVYKVDDAVQQQQLGFVARAPRYAL 316

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           +HKF  ++AST +  ID+Q+GRTG +TPVARL PV +GG ++TNATLHNED ++      
Sbjct: 317 AHKFPAEEASTVVQGIDVQVGRTGAITPVARLAPVAVGGVIVTNATLHNEDEVR------ 370

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 +DIR+GD V+V+RAG+VIP+VV  I + R PD Q F  PS CP+C S +VR  +
Sbjct: 371 -----RKDIRIGDTVIVRRAGDVIPEVVAFIADLRGPDVQEFVMPSACPVCGSAIVRLED 425

Query: 447 PKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                  A  RC+GG + C+AQ+   L HFVSR A +IEGLG+Q +      E     IR
Sbjct: 426 E------AIARCSGGWIKCAAQRKGGLLHFVSRRAMDIEGLGEQLVVQLVDRE----VIR 475

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
            PAD++ L          +  +    D S  N+  ++ K ++ +L RFI++LGIRHVG  
Sbjct: 476 TPADLYKL------GLVGLSELARMADKSARNVLAALEKSKSTTLARFIYALGIRHVGEA 529

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A+ LA ++        +++ ++A   +    L+ V  VG ++A +I+EF+ +P N+  V
Sbjct: 530 TAKELAAHF-------GQLDIVLAATEE---QLLEVADVGPVVACSILEFFADPLNVELV 579

Query: 626 EALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
           E L       +   GR  + VS     K  V TGTL  + R +A   +   G  V+  +S
Sbjct: 580 EQLRAAGVHWTEHAGR--QVVSLPQSGKTFVLTGTLPTLGRDEAAALIEAAGGKVAGSVS 637

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +KT  ++ G + GSKL KAQ+LG+ I++E   L LL+
Sbjct: 638 KKTSYVVAGSDAGSKLAKAQELGLAILDEAGLLQLLK 674


>gi|253689765|ref|YP_003018955.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756343|gb|ACT14419.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 681

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 261/711 (36%), Positives = 406/711 (57%), Gaps = 55/711 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L + + +H+  Y+    P I D EYD L +   A+    P+L  S+ P     ++G 
Sbjct: 15  VAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKALEADHPELVTSDSPT---QRVGA 71

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
               +  +V H +P LSL+ +++ E    F  RI    +  DD  + F  E K+DG  ++
Sbjct: 72  APLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFCCELKLDGLAVS 129

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           + YE G  V AA RGDG +GE++++ IR +  IP R+   NIP  +EVRGEV++  + F 
Sbjct: 130 LLYEDGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGENIPRRVEVRGEVFMKHSGFE 189

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYE 256
            LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+ A   +E
Sbjct: 190 KLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPAS-HWE 248

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L + +  G PV++ ++       ++ +Y  ++  RS+L +DIDG+V KVD   LQ++LG
Sbjct: 249 RLMQFKAWGLPVSDKIKLCTGPAEVLDFYRHVEQTRSSLGFDIDGVVVKVDSLELQERLG 308

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN 
Sbjct: 309 FVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHNA 368

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            +++GDRV+V+RAG+VIP++V I+ +ER    QP  FPS CP+
Sbjct: 369 DEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPSACPV 417

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R      G+ V   RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D   +
Sbjct: 418 CGSDVER----VEGEAVT--RCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 471

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     ++ PAD+F L     T   ++      G  S TNL +++ K ++ +L RF+++
Sbjct: 472 KE----YVKTPADLFRLSAGIMTGLDRM------GPKSATNLVNALEKAKSTTLARFLYA 521

Query: 557 LGIRHVGAEIARSLAKYYLSYQN-FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           LGIR VG   A +LA ++ S +  FA            D  +L+ VP VG ++A  +  F
Sbjct: 522 LGIRDVGESTAANLAAHFGSLEALFAA-----------DEETLLAVPDVGKVVAAHVRHF 570

Query: 616 YQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +   N   +  L      +I   E      + + S    K +V TG+L  + R +A++ 
Sbjct: 571 LEEEHNQTVIRELTDPAGINIHWPEVVVVKAEEIDSPFAGKTVVLTGSLTILSRDEAKDR 630

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 631 LTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLLGE 681


>gi|56460801|ref|YP_156082.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
 gi|81362279|sp|Q5QUK1|DNLJ_IDILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56179811|gb|AAV82533.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
          Length = 670

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 261/706 (36%), Positives = 403/706 (57%), Gaps = 50/706 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  LEQ ++ ++  YY+  +P + D+EYD L R    +    PDL  ++ P     K+
Sbjct: 7   QRMQELEQLLNRYNQEYYENDEPSVPDAEYDRLFRELKTLETEHPDLKSAQSPT---MKV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFTLEPKIDGT 137
           GG+       V H +P LSL+  +++++   F  R+    Q+ D N ++ F  EPK+DG 
Sbjct: 64  GGKPLGQFRSVEHEVPMLSLDNAFSVDEFEAFSKRVE---QRLDTNQTVTFCCEPKLDGA 120

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ YE G  V  A RGDG SGED++  ++ I  +P  LS ++PE +EVRGEV +    
Sbjct: 121 AVSLLYENGLLVRGATRGDGQSGEDITENVKTIRNVPLKLSGDVPERLEVRGEVVMPLGA 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI--FAKG 253
           F   N++      K +ANPRNAA+G LR+L+ + IT  R L+F+ + LG  SE       
Sbjct: 181 FERFNEQARQREEKVFANPRNAAAGSLRQLD-SRITAKRPLHFYAYSLGLISETTQLPDS 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ L +++  G PVN  ++  ++  G   YY  + + R TL YDIDG+V+KVD   LQ+
Sbjct: 240 HHQRLLQLKDWGLPVNIEIKTVDSVQGCDDYYEAILARRDTLNYDIDGVVFKVDSIRLQQ 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  AR+PRW I+ KF  ++  T +  +D Q+GRTG +TPVARLEPVN+GG  ++NATL
Sbjct: 300 DLGFVARAPRWAIARKFPAQEQLTTITGVDFQVGRTGAITPVARLEPVNVGGVTVSNATL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            +R+GD V ++RAG+VIP+VV +I ++R  + +   FP  
Sbjct: 360 HNADEIERL-----------GVRIGDCVSIRRAGDVIPQVVSVIKDKRPENTKAIEFPQH 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CPICQS    D+    G+ VA  RCTGGL C+AQ+ E +KHF SR A +I+GLG + ++ 
Sbjct: 409 CPICQS----DIERVEGEAVA--RCTGGLYCAAQRKEAIKHFASRKAMDIDGLGDKIVEQ 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + +     I+ PAD++ L      S  ++  +   G  S  NL ++I   +  +L RF
Sbjct: 463 LVERD----WIKSPADLYRL------SKAELATLPRMGAKSAENLRNAIKATQETTLARF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGIR VG   A +LA ++       + ++ +IA  ++    L  VP VG ++A+ IV
Sbjct: 513 IYALGIREVGEATANALANHF-------KNLDALIAAESE---QLQEVPDVGAVVAKHIV 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F+    N   V  L + +S   G    +V S+ +     V TGTL  + R +A+  +  
Sbjct: 563 AFFHEAHNQQVVAELREFISWPEGEEASSVQSDRLSGNTYVITGTLSTMTRDEAKSALEA 622

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           LGA V++ +S+KT  ++ G+N GSKL KAQ LG+ I++E     LL
Sbjct: 623 LGAKVASSVSKKTTALVAGENAGSKLTKAQSLGLDILDENALAELL 668


>gi|319779225|ref|YP_004130138.1| DNA ligase [Taylorella equigenitalis MCE9]
 gi|317109249|gb|ADU91995.1| DNA ligase [Taylorella equigenitalis MCE9]
          Length = 681

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 273/718 (38%), Positives = 412/718 (57%), Gaps = 68/718 (9%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L+  IS HD  YY    P I D EYD L R+      A P+   S+ P+    ++GG +
Sbjct: 11  ALKSLISVHDKAYYIDDNPQISDEEYDGLMRKLLDYEQAHPEWVTSDSPS---QRVGG-V 66

Query: 83  NLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
            L +F  V H++P LSL  ++N E+L  F  R+       D     F  EPK DG  I+I
Sbjct: 67  ALKIFNSVRHAVPMLSLGNVFNPEELTAFYNRMVEAVGSDD---FEFNCEPKFDGLAISI 123

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP------EIIEVRGEVYISK 195
           RYE G    A+ RGDG +GEDV+A +  I T+P  L LN+P      +IIEVRGE  + +
Sbjct: 124 RYENGVLKTASTRGDGLTGEDVTAQVSTIRTVP--LKLNVPSKEALPKIIEVRGEALMLR 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA--- 251
           +DF  L       G + +ANPRNAA+G LR+L+P     R L F+ +GLG+   + +   
Sbjct: 182 SDFDNLVKRQEEEGLQTFANPRNAAAGSLRQLDPKITAKRKLRFYAYGLGEFKSLGSEEP 241

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K Q ++L  +  LGF V           G+++++  +K+ R TLP+DIDG+VYKVD F L
Sbjct: 242 KSQSQLLDYLSELGFAVTEYRSVKKGLDGLLNFFEHIKAKRDTLPFDIDGVVYKVDSFEL 301

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+++G  +++PR+ I+HKFA +Q  T+LLDI++Q+GRTG LTPVARLEPV +GG  +  A
Sbjct: 302 QQKIGFVSKAPRFAIAHKFAAEQMQTKLLDIEVQVGRTGALTPVARLEPVFVGGVTVRKA 361

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED I+            +++ +GD V+V+RAG+VIP+V++ +++ R  DA  F  P
Sbjct: 362 TLHNEDEIE-----------RKNLMIGDTVIVRRAGDVIPEVLESVIDLRPEDAVKFVMP 410

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V +      G+ VA  RCTGGL C AQ  + + H VSR A NIEGLG + +
Sbjct: 411 TICPVCGSAVEK----PEGEAVA--RCTGGLVCGAQITQGIIHAVSRKALNIEGLGDKHI 464

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG------DVSVTNLYDSINKR 545
                +E     I+   D+F L       T    NILG        +V    L+  I   
Sbjct: 465 QKLVSTE----KIKRLDDLFKL-------TVDDLNILGRNAEDSKLEVLAPTLHARIQAS 513

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +L RF+F+LGIRHVG   AR LAKY+        ++ +I+  + ++   L+ VP VG
Sbjct: 514 KSTTLSRFLFALGIRHVGETTARDLAKYF-------GDLYSIMQASTEE---LVSVPNVG 563

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           +++A +I  F+  P N   +  LL E+   +   E+   ++  I     V TGTL+  +R
Sbjct: 564 EVMATSIHTFFNEPHNREVISNLL-ELGFVLNAEEEAIQINPAIAGHSFVVTGTLENWKR 622

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  + +   G  +++ +S+KTD +++G  PG SK++KAQ++G KI++E +F+ +L+Q
Sbjct: 623 DEISQVIISSGGRINSSVSKKTDYLLMGAEPGDSKVKKAQEVGTKILSEAEFIQMLEQ 680


>gi|167570377|ref|ZP_02363251.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis C6786]
          Length = 691

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 264/729 (36%), Positives = 404/729 (55%), Gaps = 59/729 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  +  Q  K  + L  E+   +  YY   +P + D+EYD L      +    PDL  
Sbjct: 5   PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P  P  ++GGE+      V H  P LSL   ++ ED+  F  R+     K  D    
Sbjct: 63  --TPESPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN 180
             + + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + ++P ++   +
Sbjct: 121 VTDPVEYACELKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVPLKLKGKH 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G    +        +L     LG PVN          G++ +++ +   R +LPYD
Sbjct: 241 AYGIGVLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTACPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS++K ++ +L RFI++LGIRHVG   A+ LAK++ S           +   ND     
Sbjct: 514 IDSLDKAKHTTLSRFIYALGIRHVGESTAKDLAKHFGSLDPIMDASIEALLEVND----- 568

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKL 652
                VG I+A++I +F+    N   +E L           P   R  + V   +  K +
Sbjct: 569 -----VGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGV---LAGKTV 620

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++EE
Sbjct: 621 VLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEE 680

Query: 713 QFLFLLQQY 721
               LL+ +
Sbjct: 681 GMHKLLEGH 689


>gi|52425821|ref|YP_088958.1| NAD-dependent DNA ligase LigA [Mannheimia succiniciproducens
           MBEL55E]
 gi|81386743|sp|Q65RN7|DNLJ_MANSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52307873|gb|AAU38373.1| Lig protein [Mannheimia succiniciproducens MBEL55E]
          Length = 675

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 265/725 (36%), Positives = 410/725 (56%), Gaps = 67/725 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L   + YH+  Y+    P I D+EYD L  +  A+    P+L  ++ P
Sbjct: 1   MTIMDINQQIKQLRDTLRYHEYQYHVLDDPKIPDAEYDRLFHQLKALEQQHPELITADSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-----DNSI 126
                ++G +      ++TH +P LSL+  ++ E+   F+ RI      +D        +
Sbjct: 61  T---QRVGAKPLAGFAQITHELPMLSLDNAFSDEEFNAFVKRI------QDRLIVLPQPL 111

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            F  EPK+DG  ++I Y  G    AA RGDG +GED++  IR I  IP ++L+ N P  +
Sbjct: 112 TFCCEPKLDGLAVSIFYVNGVLTQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPARL 171

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHG 242
           EVRGEV++    F  LN+  +  G K +ANPRNAA+G LR+L+P   +R     N +  G
Sbjct: 172 EVRGEVFMPHEGFNRLNERALEHGEKTFANPRNAAAGSLRQLDPKITSRRPLVFNAYSVG 231

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           + +  E+ A   YE LQ ++ +G PVN+ V+  +    ++ +Y  M+  R TL YDIDG 
Sbjct: 232 IAEGVELPAT-HYERLQWLKSVGIPVNSEVQLCDGSEKVLEFYRSMQQKRPTLGYDIDGT 290

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K+++  LQ++LG  +++PRW I++KF  ++  TRL D++ Q+GRTG +TPVA+L PV 
Sbjct: 291 VLKINDIGLQRELGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLAPVF 350

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++NATLHN D I  L           DI +GD V+++RAG+VIP+++ ++   R 
Sbjct: 351 VAGVTVSNATLHNGDEIARL-----------DIAIGDTVVIRRAGDVIPQIIGVLHERRP 399

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            +AQ   FP+ CP+C S++VR      G+ VA  RCTGGL C AQ+ E LKHFVSR A +
Sbjct: 400 ANAQAIVFPTQCPVCGSKIVR----IEGEAVA--RCTGGLFCDAQRKEALKHFVSRRAMD 453

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+G+G + ++     E     IR PAD+F L      +  ++E +   G+ S  N  DS+
Sbjct: 454 IDGVGAKLIEQLVDKE----LIRTPADLFKLDL---ITLMRLERM---GEKSAQNALDSL 503

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +N +L RFIF+LGIR VG   A +LA ++           N+ A        L  V 
Sbjct: 504 EKAKNTTLARFIFALGIREVGEATALNLANHF----------KNLDALQAASPEQLQEVA 553

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTG 656
            VG+++A  I  F++   NI AV  L+ +     G H + V ++       + K +V TG
Sbjct: 554 DVGEVVANRIYVFWREQHNIDAVNDLIAQ-----GIHWETVETKEAGENPFKGKTVVLTG 608

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL ++ R++ ++ + QLGA  +  +S KT  +I GDN GSKL KAQ+LGV +M+E +FL 
Sbjct: 609 TLTQMGRNETKDLLQQLGAKAAGSVSAKTHFVIAGDNAGSKLTKAQELGVAVMSEAEFLA 668

Query: 717 LLQQY 721
           ++  Y
Sbjct: 669 IVNAY 673


>gi|50122504|ref|YP_051671.1| NAD-dependent DNA ligase LigA [Pectobacterium atrosepticum
           SCRI1043]
 gi|81644069|sp|Q6D165|DNLJ_ERWCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49613030|emb|CAG76481.1| DNA ligase [Pectobacterium atrosepticum SCRI1043]
          Length = 681

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 259/712 (36%), Positives = 408/712 (57%), Gaps = 53/712 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L + + +H+  Y+    P I D EYD L +   A+    P+L  S+ P     ++G 
Sbjct: 8   VAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTSDSPT---QRVGA 64

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
               +  +V H +P LSL+ +++ E    F  RI    +  DD  + F  E K+DG  ++
Sbjct: 65  APLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFCCELKLDGLAVS 122

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           + YE+G  V AA RGDG +GE++++ IR +  IP R+   NIP  +EVRGEV++    F 
Sbjct: 123 LLYEEGILVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVFMKHGGFE 182

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYE 256
            LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+ A   +E
Sbjct: 183 KLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPAS-HWE 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L + +  G PV++ ++       ++ +Y +++  RS+L +DIDG+V KVD  +LQ++LG
Sbjct: 242 RLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVKVDSLALQERLG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN 
Sbjct: 302 FVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHNA 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            +++GDRV+V+RAG+VIP++V I+ +ER    QP  FP+ CP+
Sbjct: 362 DEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPAACPV 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R      G+ V   RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D   +
Sbjct: 411 CGSDVER----VEGEAVT--RCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 464

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     ++ PAD+F L     T   ++      G  S  NL +++ K ++ +L RF+++
Sbjct: 465 KE----YVKTPADLFRLSAGIMTGLDRM------GPKSAMNLVNALEKAKSTTLARFLYA 514

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +LA ++ S       +  + A + D   +L+ VP VG I+A  +  F 
Sbjct: 515 LGIRDVGESTAANLAAHFGS-------LETLFAADED---ALLEVPDVGKIVAAHVRHFL 564

Query: 617 QNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +   N   +  L      +I   E      + + S    K +V TG+L  + R +A++ +
Sbjct: 565 EEEHNQTVIRELTDPAGINIYWPEVKVVNAEEIDSPFAGKTVVLTGSLSILSRDEAKDRL 624

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL  + 
Sbjct: 625 TALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLLNNHG 676


>gi|283786048|ref|YP_003365913.1| DNA ligase [Citrobacter rodentium ICC168]
 gi|282949502|emb|CBG89116.1| DNA ligase [Citrobacter rodentium ICC168]
          Length = 671

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/715 (35%), Positives = 408/715 (57%), Gaps = 56/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     S  ++ H +P LSL+ +++ E    F  R+    + K  + + +  E K
Sbjct: 58  PTQRVGAAPLTSFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSSDKLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED++A +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITANVRTIRAIPLRLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV+N V   ++   ++++Y++++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSNRVTLCDSPEEVLAFYHKVEEDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGYVARAPRWAVAFKFPAQEQMTSVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPAETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+ V   RCTGGL C+AQ+ E LKHFVSR A +++G+
Sbjct: 401 PVVFPAQCPVCGSDVER----VEGEAVT--RCTGGLICAAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ D++ K +
Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVDALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA ++ + +  A E  +I          L +VP VG 
Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAFFGTLE--ALEAASI--------EELQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++A  +  F+    N   +  LL E       +    + + S    K +V TG+L ++ R
Sbjct: 555 VVATHVFNFFAEESNRDVIRQLLAEGVHWPAPVAIKAEEIDSPFAGKTVVLTGSLSQMSR 614

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 615 DDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|322418721|ref|YP_004197944.1| NAD-dependent DNA ligase [Geobacter sp. M18]
 gi|320125108|gb|ADW12668.1| DNA ligase, NAD-dependent [Geobacter sp. M18]
          Length = 668

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 265/711 (37%), Positives = 398/711 (55%), Gaps = 46/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A + ++ L +EI  H+  YY+   P I D+EYDAL R    +   FP+LA    P
Sbjct: 1   MEAQAAAERIAWLSKEIERHNRLYYEQDMPEITDAEYDALFRELQELEKKFPELAL---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +V HS P LSLE  ++ +D+  F  R+ RF     D  I +  E
Sbjct: 58  DSPTGRVGGRPLAKFTQVRHSTPMLSLENAFSEQDMVDFDDRVKRFLGLAADAQISYICE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  + + Y  G     + RGDG  GE+V+  ++ I  +P R+ +   PE++ VRGE
Sbjct: 118 PKMDGVAVELVYRDGLLAIGSTRGDGVVGEEVTQNLKTIKDVPLRLETREPPELVTVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           VY+    F   N E    G  P+ANPRNAA+G LR+L+ + IT  R L+ F +  G+ + 
Sbjct: 178 VYLPLAPFRKFNREREEAGEPPFANPRNAAAGSLRQLD-SRITAKRPLSIFCYAPGELAG 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +    Q   L+ +     PVN   R       +++YY EM   R  LPY+IDG+V KVD 
Sbjct: 237 VEFTSQSHFLETIPKWRLPVNPLTRVVTGIQAMLAYYQEMMEKRDDLPYEIDGVVVKVDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F +Q++LGE++RSPRW  + KF  +QA+T +  I   +GRTG++TPVA L+PV++ G ++
Sbjct: 297 FRMQRELGEKSRSPRWATAWKFPPRQATTVVEKIFHSVGRTGVITPVAFLKPVSVSGVMV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN + ++            +DIR GD V+V+RAG+VIP VV  ++++R   A   
Sbjct: 357 SRATLHNWEELE-----------RKDIREGDTVVVERAGDVIPAVVQALLDKRPEGAVKP 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C   VVR  +        A RC  GLAC AQ LER+KHF SR A +IEGLG 
Sbjct: 406 EIPTSCPVCGGEVVRLPDE------VAVRCV-GLACPAQLLERVKHFASRRAMDIEGLG- 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
              D F +      S+++ +D+  +   ++    + E +   G     NL ++I   +  
Sbjct: 458 ---DKFIEQ---LLSLKLISDVADIYALKEADFMQFERM---GKKLAENLLNAIEASKER 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R IF+LG+RHVG   A+ LA  + S +N A+         +++ L+ IR   VG  +
Sbjct: 509 DLSRLIFALGMRHVGEHTAKLLAGAFGSIENLAK--------ASEEELTSIRE--VGPQV 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A +IV+F++N  N+  +E  LKE   S    EK +      K  VFTG L+K  R  A++
Sbjct: 559 AASIVDFFKNEENLRVIER-LKEAGVSPKVEEKRLGGRFTGKTFVFTGALEKFTRDGAKK 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V Q GA  +  +S+KTD ++ G + GSKLEKA+QLGV+++ EE+FL L+Q
Sbjct: 618 MVEQEGAHAAGSVSKKTDYVVAGADAGSKLEKARQLGVRVLTEEEFLELMQ 668


>gi|262042032|ref|ZP_06015211.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259040623|gb|EEW41715.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 671

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/715 (35%), Positives = 412/715 (57%), Gaps = 52/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R+   +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K  + + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTDHLTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A     +LQ  +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  
Sbjct: 236 PASHSARLLQ-FKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   
Sbjct: 355 NATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+CQS V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCQSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA ++ + +   Q               L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
                F+    N   +  LL E     +P + + E+ + S    K +V TG+L ++ R  
Sbjct: 558 AHTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEE-IDSPFAGKTVVLTGSLSQLSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|85859410|ref|YP_461612.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
 gi|123738818|sp|Q2LTN8|DNLJ_SYNAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|85722501|gb|ABC77444.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
          Length = 672

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 266/717 (37%), Positives = 395/717 (55%), Gaps = 61/717 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E ARK +  L+  I YH+  YYQ   P I D+EYD+L +   A+   FP     + P
Sbjct: 2   MDAESARKNIEDLKARIEYHNRRYYQLDDPEISDAEYDSLLQELIALEKQFPQWLTEDSP 61

Query: 72  N-----GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           +      PL+K    ++LS        P LSL   ++ E++ +F  R+ RF    +  S 
Sbjct: 62  SRRIGAAPLSKFAPAVHLS--------PMLSLANAFSEEEILEFDRRLKRFLDSSERLS- 112

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIP 182
            F +EPKIDG  + + Y  G     A RGDG  GEDV+  IR + TIP  +       +P
Sbjct: 113 -FVVEPKIDGVAVNLIYSSGVLTTGATRGDGAKGEDVTQNIRTLHTIPLKIQNGSDERLP 171

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241
           E IE+RGE+Y+    F  LN+  +A G  P+ANPRNAA+G LR+L+ +   R  L  F +
Sbjct: 172 EQIEIRGEIYMETAAFRKLNERRLAAGEPPFANPRNAAAGSLRQLDASITARRPLKMFCY 231

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +G          +++L  ++  GF VN  +RQ       + +Y E++ +R+ LPY+IDG
Sbjct: 232 AVGIVRGRAFTYHHDVLHALKKWGFSVNPFIRQVEGIEKCIEFYRELQDLRNELPYEIDG 291

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVD+ SLQ +LG  +RSPRW ++ KFA  QA+T + DI + +GRTG LTPVA + PV
Sbjct: 292 MVIKVDDLSLQTRLGAVSRSPRWAVACKFAATQATTVIRDIIVNVGRTGTLTPVALMTPV 351

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG  ++ ATLHN+D I             +DIR+GD VLV+RAG+VIP+VV +IV+ R
Sbjct: 352 KVGGVTVSRATLHNQDEID-----------KKDIRIGDTVLVQRAGDVIPEVVKVIVSNR 400

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                PF  P  CP C S VVR          AAHRC  GL+C AQ    ++HFVSR   
Sbjct: 401 SGREIPFKIPDTCPECGSEVVRLAGE------AAHRCI-GLSCPAQLRRHIQHFVSRGGM 453

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG + +      +     I  PAD++ L      S   + N+    + SV+NL  +
Sbjct: 454 DIEGLGDKLVSQLVNQK----LIHDPADLYYL------SHDALLNLERMAEKSVSNLLSA 503

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   ++ SL++ IF+LGIRHVG  I++ LA+ + +         N           L+ +
Sbjct: 504 IELSKHPSLDKIIFALGIRHVGEHISKILARRFRTLDALINTTEN----------ELLAI 553

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
             +G  ++ +I+EF++N  N   +E L K  VSP      +  S+ +  K  VFTG L +
Sbjct: 554 RDIGPEVSSSILEFFRNASNRRVIEKLKKAGVSPLETISPR--SAPLTGKTFVFTGALSR 611

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + R +A++ V  LG   +  +++KTD ++ G+  GSKL+KAQ+ G+ I++EE+FL L
Sbjct: 612 MTRDEAKQIVESLGGQAAGTVTKKTDYVVAGEAAGSKLQKAQKAGIAILSEEEFLRL 668


>gi|212638096|ref|YP_002314616.1| NAD-dependent DNA ligase LigA [Anoxybacillus flavithermus WK1]
 gi|254781544|sp|B7GFV1|DNLJ_ANOFW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212559576|gb|ACJ32631.1| NAD-dependent DNA ligase [Anoxybacillus flavithermus WK1]
          Length = 672

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/706 (36%), Positives = 402/706 (56%), Gaps = 52/706 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K+++ L ++I  H+  YY   +P I D+EYD L R+   +   +P   + + P+ P  ++
Sbjct: 11  KQIAELREQIEKHNYAYYVLDQPSISDAEYDELMRKLMELEEQYP---QYKTPDSPSQRV 67

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +  KVTH +P LSL   +N  DLR F  R+     +++   + +  E KIDG  
Sbjct: 68  GGAPLEAFRKVTHRVPMLSLSNAFNEGDLRDFDRRV-----RQEVGDVRYVCELKIDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++RYE G FV  A RGDG +GED++  ++ I ++P  L L     IEVRGE Y+ +  F
Sbjct: 123 VSLRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLRQQVTIEVRGEAYMPRKSF 180

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN++    G + +ANPRNAA+G LR+L+P    +R L+ F + +    E+        
Sbjct: 181 EKLNEKRKMNGEELFANPRNAAAGSLRQLDPKVAASRQLDIFAYHVVNAEELGILSHSAA 240

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  +  LGF  N   +   T   ++SY  +    R++LPYDIDG+V KVD F+ QKQLG 
Sbjct: 241 LNYLDELGFKTNPARQVCETIDDVLSYIEQWHERRASLPYDIDGIVIKVDAFAQQKQLGA 300

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  ++  T+L+DI++ +GRTG++TP A L+PV + G ++  A+LHNED
Sbjct: 301 TAKSPRWAIAYKFPAEEVVTQLVDIELSVGRTGVVTPTAILQPVRVAGTIVQRASLHNED 360

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI+            +DIR+GD V++K+AG++IP+VV  +   R    +PF  P+ CP C
Sbjct: 361 YIR-----------EKDIRLGDYVVIKKAGDIIPEVVCSLPERRTGKEEPFDMPTHCPAC 409

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +VR L+ +      A RC     C AQ  E L HFVSR A NI+GLG++ +   F+ 
Sbjct: 410 ASELVR-LDDEV-----ALRCVNP-QCPAQIREGLIHFVSRQAMNIDGLGEKVIAQLFEH 462

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +R  AD++TL + +  +  ++      G+ S TNL  +I   +  SLER +F L
Sbjct: 463 R----LVRSVADLYTLTKDELVALERM------GEKSATNLLQAIEASKQNSLERLLFGL 512

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA+ A++LA+++ + +   Q               L+ +  +G+ +A +IV ++ 
Sbjct: 513 GIRHVGAKAAKTLAEHFETMERLQQATKE----------ELMAIHEIGEKMADSIVTYFS 562

Query: 618 NPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
                  +E L      ++    +   ++SS    K  V TGTLQ + R +A+E +  LG
Sbjct: 563 KEEVKQLLERLRAYGVNMTYKGAKQTIDISSTFAGKTFVLTGTLQSMSRSEAKEKIETLG 622

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             V+  +S+KTD+++VG++ GSKLEKA+QLG+ I +E +FL  +QQ
Sbjct: 623 GKVTGSVSKKTDVVVVGEDAGSKLEKAKQLGITIWDEARFLQEIQQ 668


>gi|261822799|ref|YP_003260905.1| NAD-dependent DNA ligase LigA [Pectobacterium wasabiae WPP163]
 gi|261606812|gb|ACX89298.1| DNA ligase, NAD-dependent [Pectobacterium wasabiae WPP163]
          Length = 681

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 259/708 (36%), Positives = 405/708 (57%), Gaps = 53/708 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L + + +H+  Y+    P I DSEYD L +   A+    P+L  S+ P     ++G 
Sbjct: 15  VAELRRVLRHHEYKYHVEDAPEIPDSEYDKLMQELKALEADHPELVTSDSPT---QRVGA 71

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
               +  +V H +P LSL+ +++ E    F  RI    +  DD  + F  E K+DG  ++
Sbjct: 72  APLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFCCELKLDGLAVS 129

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           + YE G  V AA RGDG +GE++++ IR +  IP R+   NIP  +EVRGEV++    F 
Sbjct: 130 LLYEDGVLVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVFMKHGGFE 189

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYE 256
            LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+ A   +E
Sbjct: 190 KLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPAS-HWE 248

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L + +  G PV++ ++       ++ +Y +++  RS L +DIDG+V KVD  +LQ++LG
Sbjct: 249 RLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSELGFDIDGVVVKVDSLALQERLG 308

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN 
Sbjct: 309 FVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHNA 368

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            +++GDRV+V+RAG+VIP++V I+ +ER    QP  FP  CP+
Sbjct: 369 DEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPVACPV 417

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R      G+ V   RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D   +
Sbjct: 418 CGSDVER----VEGEAVT--RCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 471

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     ++ PAD+F L     T   ++      G  S  N+ +++ K ++ +L RF+++
Sbjct: 472 KE----YVKTPADLFRLSAGSMTGLDRM------GPKSAMNVVNALEKAKSTTLARFLYA 521

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +LA ++ S       +  + A + D   +L+ VP VG I+A  +  F 
Sbjct: 522 LGIRDVGESTAANLAAHFGS-------LEALFAADED---ALLAVPDVGKIVAAHVRHFL 571

Query: 617 QNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +   N   +  L      +I   E      + + S    K +V TG+L  + R +A++ +
Sbjct: 572 EEEHNQTVIRELTDPAGINIHWPEVQVVNAEEIDSPFAGKTVVLTGSLSILSRDEAKDRL 631

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 632 TALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 679


>gi|237745525|ref|ZP_04576005.1| DNA ligase [Oxalobacter formigenes HOxBLS]
 gi|229376876|gb|EEO26967.1| DNA ligase [Oxalobacter formigenes HOxBLS]
          Length = 685

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 264/717 (36%), Positives = 406/717 (56%), Gaps = 59/717 (8%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L  EI  ++  YY    P++ D+EYD + R    +  A+P+L     P  P  ++GG 
Sbjct: 20  AKLRSEIERYNYAYYVLDAPVVPDAEYDRVFRELQELEAAYPELVV---PGSPTQRVGGA 76

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
                 KV H +P LSL+     E++  F  R+    ++     + +  E K DG  +++
Sbjct: 77  PLAQFDKVEHRLPMLSLQNGLTDEEVEAFDRRL---GEELGIAQVEYEAELKFDGLAVSL 133

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLA 200
           RYEKG  V AA RGDG SGE+++A IR I ++P  LS L  PE++EVRGEV + K DF  
Sbjct: 134 RYEKGVLVQAATRGDGMSGENITANIRTIRSVPLHLSELAPPEVLEVRGEVLMFKKDFQD 193

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK-TSEIFAKGQYEM 257
           LN      G+K + NPRNAA+G LR+L+ + IT  R L FF +G+G+       + Q  +
Sbjct: 194 LNRRQRESGQKEFVNPRNAAAGSLRQLD-SQITASRQLKFFAYGIGELDGAPLPETQNRL 252

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L     LG PV    +    F G++ ++  +++ R  LPY+IDG+VYKV+  S Q++LG 
Sbjct: 253 LNWFVQLGIPVCEERKVVRGFKGLMGFFQAIEARRDALPYEIDGVVYKVNRLSEQQKLGF 312

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PR+ ++HKF  ++  T + DI++Q+GRTG +TPVARL+PV +GG  +TNATLHNED
Sbjct: 313 ISRAPRFALAHKFPAQEVLTEVTDINVQVGRTGAITPVARLKPVFVGGVTVTNATLHNED 372

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            ++            +D+R+GD V+V+RAG+VIP+V+  +  +R  DA+ F  P+ CP+C
Sbjct: 373 EVR-----------RKDVRIGDTVIVRRAGDVIPEVIASVPEKRPADAREFVMPALCPVC 421

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
            S +VR  +       A  RC+GG + C+AQ+   L+ F SR A NIEGLG+Q +D    
Sbjct: 422 GSPIVRPEDE------AIARCSGGWIKCAAQKKGGLQLFASRKAMNIEGLGEQLIDQLVD 475

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I   AD++ L     +   ++       D S +NL D + + R  +L RF+++
Sbjct: 476 RQ----IINDAADLYRLDLETLSGLDRM------ADKSASNLLDELGRSRETTLSRFLYA 525

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG   ARSLA+++ + Q+            N     L+ V  +G ++A +I +F+
Sbjct: 526 LGIRHVGETTARSLAEHFGNLQDLM----------NATEEQLLEVDDIGPVVALSIRQFF 575

Query: 617 QNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            + RN   +  L  +    P     EK  +  ++++K V TGTL  + R  A E +  LG
Sbjct: 576 DDVRNRELIGKLQNDGVHWPERAMKEKPPALPLQDRKFVLTGTLSSLTREAAAEIIRNLG 635

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
             VS  +S+KTD ++ G  PGSKL KAQ+LG++I++EE F+ L++        HD D
Sbjct: 636 GKVSNSVSKKTDYVLAGSEPGSKLAKAQELGIRILDEEAFVQLVK--------HDKD 684


>gi|76810783|ref|YP_333980.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b]
 gi|167720173|ref|ZP_02403409.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei DM98]
 gi|167911510|ref|ZP_02498601.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 112]
 gi|254189298|ref|ZP_04895809.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
 gi|254259109|ref|ZP_04950163.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
 gi|254297202|ref|ZP_04964655.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
 gi|123771899|sp|Q3JR23|DNLJ_BURP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76580236|gb|ABA49711.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b]
 gi|157807762|gb|EDO84932.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
 gi|157936977|gb|EDO92647.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
 gi|254217798|gb|EET07182.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
          Length = 691

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 271/726 (37%), Positives = 401/726 (55%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  +  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G          +  +L     LG PVN          G++++++ +   R +LPYD
Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFAEKSARNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S         + I H   D  +L
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSL--------DPIMHAPID--AL 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E L    K   P      +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 TLLEGH 689


>gi|268593162|ref|ZP_06127383.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
 gi|291311208|gb|EFE51661.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
          Length = 671

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/708 (35%), Positives = 409/708 (57%), Gaps = 49/708 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E+  L++++ +H+  Y+    P I D EYD L +R   I    P+L  S+ P     +
Sbjct: 4   KQEIDELKKQLRHHEYQYHVLDAPEIPDVEYDKLMQRLKEIEAQHPELVTSDSPT---QR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +   V H IP LSL+ +++ E    F  R+    + K+   + F  E K+DG 
Sbjct: 61  VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRD--RLKNHQELTFCCELKLDGL 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ YE G+ V AA RGDG  GE+++A +R I  IP R+   NIP+ +E+RGEV++ + 
Sbjct: 119 AVSLLYENGELVQAATRGDGTVGENITANVRTIRAIPLRLRGSNIPDRVEIRGEVFMPQK 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAKGQ 254
            F ALN++      K +ANPRNAA+G LR+L+P     R L F+ +G+G           
Sbjct: 179 GFEALNEQARKTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGGSLPDTH 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y+ L + +  G PV++ V+       ++ +Y+E++ +R  L +DIDG+V KV+  ++Q++
Sbjct: 239 YDRLMQFKAWGLPVSDYVQLRVGHQAVLDFYHEIEQVRPDLGFDIDGVVIKVNSIAIQEE 298

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW  + KF  ++  T L D++ Q+GRTG +TPVARLEPV + G +++NATLH
Sbjct: 299 LGFVSRAPRWATAFKFPAQEQVTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLH 358

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            + +GD V+++RAG+VIP++V ++V++R  D++   FP+ C
Sbjct: 359 NADEIERL-----------GVHIGDTVIIRRAGDVIPQIVSVVVDKRPTDSREIVFPTHC 407

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S    D+    G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G + +D  
Sbjct: 408 PVCGS----DIERVEGEAVA--RCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     ++ PAD++      Q S   +  +   G  S  NL D++NK +  +L RFI
Sbjct: 462 VEKE----YVKTPADLY------QLSAGILTGLDRMGPKSAQNLVDALNKSKQTTLARFI 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA +Y + +          A    D  SL  V  +G ++A+ +V 
Sbjct: 512 YALGIREVGEATAANLAAHYTTLE----------AVMTADEESLKTVQDIGHVVAKHVVN 561

Query: 615 FYQNPRNICAVEALLKEVS---PSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F++ P N   +E LL + +   P +   +   + S    K +V TG++  + R +A++ +
Sbjct: 562 FFREPHNQAVIEDLLTKANIHWPEVKVVNSAEIDSPFAGKTVVLTGSMSVLTRDEAKDKL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             LGA VS  +S+KTD++I G+  GSKL KA +LG+++++E + + LL
Sbjct: 622 VALGAKVSGSVSKKTDLVIAGEAAGSKLAKANELGIRVIDENELVRLL 669


>gi|15603581|ref|NP_246655.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|81636517|sp|Q9CKA9|DNLJ_PASMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|12722128|gb|AAK03800.1| Lig [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 673

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 260/718 (36%), Positives = 408/718 (56%), Gaps = 69/718 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+  L Q + YH+  Y+    P I D+EYD L  R   +   +P       P+ P  ++G
Sbjct: 8   EIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKTLEQQYPQWF---SPDSPTQRVG 64

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLEPK 133
            +   +  +V H +P LSL+  ++ E+L  F+ RI        D  +F      F  EPK
Sbjct: 65  AKPLSAFAQVQHEMPMLSLDNAFSDEELHAFVKRI-------QDRLVFSPKLLEFCCEPK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  GK   AA RGDG +GED++  IR +  IP ++L  N P  +EVRGEV+
Sbjct: 118 LDGLAVSILYVDGKLTQAATRGDGSTGEDITLNIRTVRNIPLQLLMENPPTRLEVRGEVF 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSEI 249
           +S+  F  LN++ +A G K +ANPRNAA+G LR+L+P   ++    LN +  G+ +  ++
Sbjct: 178 MSQAGFEVLNEKALARGEKTFANPRNAAAGSLRQLDPRITSQRPLLLNAYSIGVAEGIDL 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                +E LQ ++ +G PVNN ++       ++++Y  +   RSTL YDIDG V KV++ 
Sbjct: 238 -PDTHFERLQWLKSIGIPVNNEIQLCEGTENVLNFYRAIMQKRSTLGYDIDGTVIKVNDI 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +++PRW I++KF  ++  T L  ++ Q+GRTG +TPVA+L+PV + G  ++
Sbjct: 297 ALQEELGFISKAPRWAIAYKFPAQEELTVLNAVEFQVGRTGAITPVAKLQPVFVAGVTVS 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L           D+ +GD V+++RAG+VIP+++ ++  +R  +A+   
Sbjct: 357 NATLHNGDEIARL-----------DVAIGDTVIIRRAGDVIPQIIGVLHEKRPANAEKIV 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S +VR      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+G +
Sbjct: 406 FPTECPVCGSVIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGVGAK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     I  PAD+F L      +  ++E +   G  S  N  DS+ K +  +
Sbjct: 460 LIEQLVDRE----QIHTPADLFKLDL---NTLARLERM---GLKSAQNALDSLQKAKKTT 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFIF+LGIR VG   A +LA ++ + +   +     +    D          VG+++A
Sbjct: 510 LARFIFALGIREVGEATALNLANHFKTLEALKEATLEQLQEVQD----------VGEVVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS------SEIENKKLVFTGTLQKIQR 663
             I  F++ P N+  VE L+ +     G H + V       +  + K +V TGTL ++ R
Sbjct: 560 NRIFVFWREPHNVAVVEDLIAQ-----GIHWETVEVKDVGDNPFKEKTVVLTGTLTQMGR 614

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            +A+  + QLGA VS  +S KTD+++ GD+ GSKL KA +LGVK+++E  FL   + Y
Sbjct: 615 TEAKALLQQLGAKVSGSVSAKTDLVVAGDSAGSKLTKANELGVKVIDENTFLAWSKPY 672


>gi|260219439|emb|CBA26284.1| DNA ligase [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 696

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 263/717 (36%), Positives = 391/717 (54%), Gaps = 56/717 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K L +L +E+      YY    P++ D EYD L R    +    P+      P+ P  ++
Sbjct: 20  KRLQALREELHRLGHAYYVLDAPLVPDVEYDRLFRELQDLEAQHPEWV---TPDSPTQRV 76

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK--FITRIYRFWQ-KKDDNSIFFTLEPKID 135
           GG++  +   V H++P LS+    + E      F TR+ +  +  + D  + +  E K D
Sbjct: 77  GGQVLDAFTSVRHAVPMLSIRTETDTESTGALAFDTRVRKELELNEGDAPVEYVAELKFD 136

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + +RYE+G  V AA RGDG  GEDV+  IR I  IP  L   +P ++EVRGEVY+ +
Sbjct: 137 GLAMNLRYEQGVLVQAATRGDGEYGEDVTQNIRTIGQIPLRLPDGVPPVLEVRGEVYMRR 196

Query: 196 NDFLALNDEMIA------VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248
           +DF ALN+   A       G K + NPRNAA+G +R+L+P     R L+FF +GLG+ + 
Sbjct: 197 DDFEALNERQRARIAAGEKGEKTFVNPRNAAAGAVRQLDPGIAAQRPLSFFAYGLGEVTP 256

Query: 249 IFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               G      Y MLQ ++  GFPV   V  A     +++Y+  + + R +LP+DIDG+V
Sbjct: 257 AAEGGPDFGSHYAMLQTLKSWGFPVAAQVDTARGAPELIAYHQRIGAGRDSLPFDIDGVV 316

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV+  +LQ++LG   R PRW ++HK+  ++  T +L ID+Q+GRTG LTPVA+L PV +
Sbjct: 317 YKVNSLALQQRLGFVTREPRWAVAHKYPAQEQLTTVLAIDVQVGRTGKLTPVAKLAPVFV 376

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHNED  +            +D+RVGD V+V+RAG+VIP+VV ++  +R  
Sbjct: 377 GGVTVTNATLHNEDEAR-----------RKDVRVGDTVIVRRAGDVIPEVVSVLPEKREG 425

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA  F+ P  CP+CQS  VR+         A +RCTGGL CSAQ+ + + HF  R A  +
Sbjct: 426 DAPQFTMPRICPVCQSAAVREEGE------ADYRCTGGLFCSAQRKQAILHFAQRRAVEV 479

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG + ++        A  IR   D++ L        + + ++    D S  N+ D++ 
Sbjct: 480 EGLGDKLVEQLVD----ANVIRNLPDLYRL------GLSALASLDRMADKSAQNIVDALE 529

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +  +L RF+F LGIRHVG   A+ LA+++            + A    D  +L+ V  
Sbjct: 530 KSKQTTLPRFLFGLGIRHVGEATAKELARHF----------GTLDAIMEADEEALLAVSD 579

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           VG I+AQ+I  F+    N   VE L    V+   G         +  K LV TGTL  + 
Sbjct: 580 VGPIVAQSIRTFFDQAHNREVVEQLRACGVTWPEGAPADAGPKPLAGKTLVLTGTLPTLG 639

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R  A++ +   G  VS  +S+KT  ++ G   GSKL+KA +LGV +++E   L LL+
Sbjct: 640 RDAAKDLIEAAGGKVSGSVSKKTHFVVAGAEAGSKLDKANELGVPVLDEAGLLELLK 696


>gi|330013648|ref|ZP_08307732.1| DNA ligase [Klebsiella sp. MS 92-3]
 gi|328533421|gb|EGF60158.1| DNA ligase [Klebsiella sp. MS 92-3]
          Length = 671

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/715 (35%), Positives = 411/715 (57%), Gaps = 52/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R+   +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K  + + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTDHLTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A     +LQ  +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  
Sbjct: 236 PASHSARLLQ-FKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 ELQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   
Sbjct: 355 NATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+CQS V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCQSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFRLTAGELTGLDRM------GPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA ++ + +   Q               L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
                F+    N   +  LL E     +P + + E+ + S    K +V TG+L ++ R  
Sbjct: 558 THTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEE-IDSPFAGKTVVLTGSLSQLSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|138893932|ref|YP_001124385.1| NAD-dependent DNA ligase LigA [Geobacillus thermodenitrificans
           NG80-2]
 gi|166215760|sp|A4IJY6|DNLJ_GEOTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|134265445|gb|ABO65640.1| DNA ligase [Geobacillus thermodenitrificans NG80-2]
          Length = 670

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 271/711 (38%), Positives = 411/711 (57%), Gaps = 62/711 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA++  + L + ++ +   YY   +P + D+EYD L +   AI   +P+L  S+ P   
Sbjct: 4   QQAKRRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTSDSPT-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +IGG    +  KVTH +P +SL   +N  DLR F  R+     +++     +  E KI
Sbjct: 62  -QRIGGPPLEAFRKVTHRVPMMSLANAFNEGDLRDFDRRV-----RQEVGEAAYVCELKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L LN P  +E RGE ++ 
Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLNEPVSLEARGEAFMP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL    E+  + 
Sbjct: 174 KASFLRLNEERQARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIES 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
               L  ++ LGF VN   R+  T   ++++ NE K  R  LPY+IDG+V KVD F+ Q+
Sbjct: 234 HSAALSYLQSLGFKVNPERRRCATIDEVIAFVNEWKEKRPQLPYEIDGIVIKVDSFAQQR 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  A+SPRW I++KF  ++  T L+ I++ +GRTG +TP A LEPV + G  +  ATL
Sbjct: 294 QLGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGAVTPTAILEPVRVAGTTVQRATL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF+ P+ 
Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDEVPFTMPTH 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +VR L+ +      A RC     C AQ  ERL HF SR A NIEGLG++ +  
Sbjct: 403 CPECESELVR-LDGEV-----ALRCLNP-KCPAQLRERLIHFASRSAMNIEGLGEKVVTQ 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F     A  +   AD++ L + Q     ++      G+ S  NL  +I   +  SLER 
Sbjct: 456 LFN----AGLVHDVADLYQLTKEQLVGLERM------GEKSAANLLAAIEASKQNSLERL 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR+VGA+ A+ LA+++       + +  + A   D+   L+ VP +G+ +A +I 
Sbjct: 506 LFGLGIRYVGAKAAQLLAEHF-------ETMERLEAATKDE---LMAVPEIGEKMADSIT 555

Query: 614 EFYQNPRNICAVEALLKEVS------PSIGRH---EKNVSSEIENKKLVFTGTLQKIQRH 664
            ++  P    AVE LL E+          GR    E   SS +  K +V TG L  + R+
Sbjct: 556 TYFSQPE---AVE-LLNELRTYGVNMAYKGRKRTAETPASSVLAGKTVVLTGKLASMSRN 611

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +A+E + +LG  V+  +SR TDI+I G++ GSKL+KAQQLG++I +E +FL
Sbjct: 612 EAKEQIERLGGRVTGSVSRSTDIVIAGEDAGSKLDKAQQLGIEIWDETRFL 662


>gi|196250518|ref|ZP_03149209.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
 gi|196210008|gb|EDY04776.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
          Length = 670

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 271/711 (38%), Positives = 411/711 (57%), Gaps = 62/711 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA++  + L + ++ +   YY   +P + D+EYD L +   AI   +P+L  S+ P   
Sbjct: 4   QQAKRRATELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTSDSPT-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +IGG    +  KVTH +P +SL   +N  DLR F  R+     +++     +  E KI
Sbjct: 62  -QRIGGPPLEAFRKVTHRVPMMSLANAFNEGDLRDFDRRV-----RQEVGEAAYVCELKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L LN P  +E RGE ++ 
Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLNEPVSLEARGEAFMP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL    E+  + 
Sbjct: 174 KASFLRLNEERQARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIES 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
               L  ++ LGF VN   R+  T   ++++ NE K  R  LPY+IDG+V KVD F+ Q+
Sbjct: 234 HSAALSYLQSLGFKVNPERRRCATIDEVIAFVNEWKEKRPQLPYEIDGIVIKVDSFAQQR 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  A+SPRW I++KF  ++  T L+ I++ +GRTG +TP A LEPV + G  +  ATL
Sbjct: 294 QLGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGAVTPTAILEPVRVAGTTVQRATL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF+ P+ 
Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDEVPFTMPTH 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +VR L+ +      A RC     C AQ  ERL HF SR A NIEGLG++ +  
Sbjct: 403 CPECESELVR-LDGEV-----ALRCLNP-KCPAQLRERLIHFASRSAMNIEGLGEKVVTQ 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F     A  +   AD++ L + Q     ++      G+ S  NL  +I   +  SLER 
Sbjct: 456 LFN----AGLVHDVADLYQLTKEQLVGLERM------GEKSAANLLAAIEASKQNSLERL 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR+VGA+ A+ LA+++       + +  + A   D+   L+ VP +G+ +A +I 
Sbjct: 506 LFGLGIRYVGAKAAQLLAEHF-------ETMERLEAATKDE---LMAVPEIGEKMADSIT 555

Query: 614 EFYQNPRNICAVEALLKEVS------PSIGRH---EKNVSSEIENKKLVFTGTLQKIQRH 664
            ++  P    AVE LL E+          GR    E   SS +  K +V TG L  + R+
Sbjct: 556 TYFSQPE---AVE-LLNELRTYGVNMAYKGRKRTAETPASSVLAGKTVVLTGKLASMSRN 611

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +A+E + +LG  V+  +SR TDI+I G++ GSKL+KAQQLG++I +E +FL
Sbjct: 612 EAKEQIERLGGRVTGSVSRSTDIVIAGEDAGSKLDKAQQLGIEIWDETRFL 662


>gi|197117724|ref|YP_002138151.1| NAD-dependent DNA ligase [Geobacter bemidjiensis Bem]
 gi|254781337|sp|B5EIJ0|DNLJ_GEOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197087084|gb|ACH38355.1| DNA ligase, NAD-dependent [Geobacter bemidjiensis Bem]
          Length = 668

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 269/710 (37%), Positives = 394/710 (55%), Gaps = 54/710 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L  EI  H+  YY+   P I D+EYDAL R    +  ++PDLA    P+ P  
Sbjct: 6   AAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASYPDLAL---PDSPTG 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG       +V H+ P LSLE  +  +D+  F  R+ RF        I +  EPK+DG
Sbjct: 63  RVGGRPVAKFTQVRHTTPMLSLENAFTEKDIVDFDDRMKRFLGLSGAEEIGYVCEPKMDG 122

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             + + Y  G     + RGDG  GE+V+  ++ I  IP R+ +   P ++ VRGEVY+  
Sbjct: 123 VAVELVYRDGLLAIGSTRGDGLVGEEVTQNLKTIKDIPLRLQTEEPPGLLTVRGEVYLPL 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG 253
             F   N E    G  P+ANPRNAA+G LR+L+ + IT  R L+ F +  G+   +  + 
Sbjct: 183 EPFRKFNQEREEAGEPPFANPRNAAAGSLRQLD-SKITAKRPLSIFCYAPGEVDGVAFQS 241

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + L  +     PVN   R      G++ YYNEM   R  LPY+IDG+V KVD FSLQ+
Sbjct: 242 QSDFLSTIPTWRIPVNPLTRLVPGVQGVLDYYNEMMEKRDDLPYEIDGVVVKVDRFSLQR 301

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LGE++RSPRW I+ KF  +QA+T + DI  Q+GRTG++TPVA LEPVN+ G +++ ATL
Sbjct: 302 DLGEKSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPVAHLEPVNVSGVMVSRATL 361

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN + ++            +DIR GD V+V+RAG+VIP VV ++V +R         P  
Sbjct: 362 HNWEEME-----------RKDIRRGDTVVVERAGDVIPAVVQVLVEKRQGSETLLPVPQA 410

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C   VVR      G++  A RC  GL C AQ LER+KHF +R A +I+GLG++ ++ 
Sbjct: 411 CPVCGGEVVR----IPGEV--AVRCV-GLNCPAQALERVKHFAARRAMDIDGLGEKFIEQ 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISL 550
               +     IR  ADI+ L           E+ + F   G     NL +SI   +   L
Sbjct: 464 LLNLK----LIRNVADIYRLTE---------EDFMQFERMGKKLAENLLNSIAASKEREL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R IF+LGIRHVG   A+ LA  + S +N        +A  +++ L+ IR   VG  +A 
Sbjct: 511 SRLIFALGIRHVGEHTAKLLASAFGSMEN--------LAAASEEELTSIRE--VGPQVAA 560

Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I +F+++  N+  +  L +  V+P +   EK V      K  VFTG L+K  R +A++ 
Sbjct: 561 SIADFFKSEENLEVLRELKEHGVNPRV--EEKRVGGRFTGKTFVFTGALEKFTRDEAKKM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   G   +  +S+KTD ++ G + GSKL+KAQQLGV++++E+ FL L+Q
Sbjct: 619 VELEGGHAAGSVSKKTDYVVAGADAGSKLDKAQQLGVRVLSEDDFLELMQ 668


>gi|83647417|ref|YP_435852.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396]
 gi|123767368|sp|Q2SD47|DNLJ_HAHCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83635460|gb|ABC31427.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396]
          Length = 683

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/714 (35%), Positives = 398/714 (55%), Gaps = 49/714 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++EL++L + I+ H+  YY    P I D+EYD L RR   I   FP   ++  P+ P  +
Sbjct: 9   QEELNTLRETINDHNYRYYTLDDPSIPDAEYDRLMRRLREIEAEFP---QTITPDSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G         V+H +P LSL+  +  +DL  F  R+    ++ +D  I +  EPK+DG 
Sbjct: 66  VGAAPAEGFETVSHRLPMLSLDNAFEEQDLLDFDRRVRERLKEAEDARIDYCCEPKLDGI 125

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++ Y  G  V    RGDG +GED++A ++ +  IP ++     P  +EVRGE+Y+ K 
Sbjct: 126 AISLLYRDGYLVRGVTRGDGSAGEDITANVKTVKNIPLKLRGEGYPAELEVRGEIYLPKA 185

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255
            F A+N +  A G K + NPRNAA+G LR+L+P     R L    + +G         Q+
Sbjct: 186 AFDAINKDAAAKGEKTFVNPRNAAAGSLRQLDPRITAKRALEMCCYSVGYFEGELPGTQH 245

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L +++  G  +N+ ++ A+     + YY  + S+R  LPY+IDG+V+KV+   LQ++L
Sbjct: 246 DILTQLQQWGLKINSQMKLASGAQECLDYYRHIMSVRDQLPYEIDGVVFKVNRIDLQQEL 305

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I+HKF   +  T LL +D Q+GRTG +TPVARL+PV +GG  ++NATLHN
Sbjct: 306 GFVSRAPRWAIAHKFPAHEEMTELLAVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHN 365

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           D+ +GD V+++RAG+VIP+VV ++ + R  +A P   P  CP
Sbjct: 366 MDEIRRL-----------DVHIGDTVIIRRAGDVIPQVVSVVQDRRPENAVPVDRPEHCP 414

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S V++      G+ VA  RC+GGL CSAQ+ E +KHF SR A +I+GLG + ++   
Sbjct: 415 VCGSDVLQ----LEGEAVA--RCSGGLYCSAQRKEAIKHFASRKAMDIDGLGDRLVELLV 468

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + E     I  PA +++L+         +  +   G+ S  NL ++I   +  +  RFI+
Sbjct: 469 EKE----LIDSPASLYSLK------APDVAGLERMGEKSAQNLINAIEASKQTTFARFIY 518

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A+ LA+++ +     Q               L+  P +G I A  I  F
Sbjct: 519 ALGIREVGEATAKVLAQHFPTLDLLKQATEE----------DLVEAPDIGPISAGHIRSF 568

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKAQEYVT 671
           +Q   N+  ++ALL +    +   E  V S     +  +  V TG L    R +A++ +T
Sbjct: 569 FQQEHNLETIDALLNQ---GVSWPEVVVRSTETLPLSGQTAVVTGVLADYSRDEAKDLLT 625

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           +LGA VS  +S KT  ++ G+  GSKL KAQ LGVK+++E+ F  LL+++   L
Sbjct: 626 RLGAKVSGSVSAKTGFVVAGEKAGSKLTKAQDLGVKVLDEDAFKQLLEEHQAHL 679


>gi|53719773|ref|YP_108759.1| DNA ligase [Burkholderia pseudomallei K96243]
 gi|167816389|ref|ZP_02448069.1| DNA ligase [Burkholderia pseudomallei 91]
 gi|81379503|sp|Q63T07|DNLJ_BURPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52210187|emb|CAH36166.1| DNA ligase [Burkholderia pseudomallei K96243]
          Length = 691

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 268/726 (36%), Positives = 397/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  +  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G          +  +L     LG PVN          G++++++ +   R +LPYD
Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVGLDRFAEKSARNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S         + +   ND     
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDALLEVND----- 568

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFT 655
                VG I+A++I +F+    N   +E L    K   P      +     +  K +V T
Sbjct: 569 -----VGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 TLLEGH 689


>gi|126453906|ref|YP_001066758.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a]
 gi|134277579|ref|ZP_01764294.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
 gi|167739178|ref|ZP_02411952.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 14]
 gi|167824768|ref|ZP_02456239.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 9]
 gi|167846299|ref|ZP_02471807.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei B7210]
 gi|167894881|ref|ZP_02482283.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 7894]
 gi|167903270|ref|ZP_02490475.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei NCTC 13177]
 gi|167919520|ref|ZP_02506611.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei BCC215]
 gi|217421846|ref|ZP_03453350.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
 gi|226198948|ref|ZP_03794511.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
 gi|237812814|ref|YP_002897265.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
 gi|242317106|ref|ZP_04816122.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
 gi|254179316|ref|ZP_04885915.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
 gi|254198094|ref|ZP_04904516.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
 gi|166215566|sp|A3NWN7|DNLJ_BURP0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126227548|gb|ABN91088.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a]
 gi|134251229|gb|EBA51308.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
 gi|169654835|gb|EDS87528.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
 gi|184209856|gb|EDU06899.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
 gi|217395588|gb|EEC35606.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
 gi|225929048|gb|EEH25072.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
 gi|237506455|gb|ACQ98773.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
 gi|242140345|gb|EES26747.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
          Length = 691

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 268/726 (36%), Positives = 397/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  +  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G          +  +L     LG PVN          G++++++ +   R +LPYD
Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFAEKSARNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S         + +   ND     
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDALLEVND----- 568

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFT 655
                VG I+A++I +F+    N   +E L    K   P      +     +  K +V T
Sbjct: 569 -----VGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 TLLEGH 689


>gi|126441747|ref|YP_001059474.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 668]
 gi|166215567|sp|A3NAV3|DNLJ_BURP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126221240|gb|ABN84746.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 668]
          Length = 691

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 267/726 (36%), Positives = 397/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  +  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 LPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G          +  +L     LG PVN          G++++++ +   R +LPYD
Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFAEKSARNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S         + +   ND     
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDALLEVND----- 568

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFT 655
                VG I+A++I +F+    N   +E L    K   P      +     +  K +V T
Sbjct: 569 -----VGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 TLLEGH 689


>gi|194289797|ref|YP_002005704.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
 gi|254781303|sp|B3R2C2|DNLJ_CUPTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193223632|emb|CAQ69639.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
          Length = 709

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 257/707 (36%), Positives = 387/707 (54%), Gaps = 64/707 (9%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +E+  H+  YY    P + D+EYDAL     A+    P+L   + P+ P  ++GGE  
Sbjct: 31  LREELDRHNYQYYVLDAPTVPDAEYDALFSELMALELEHPEL---QTPDSPTQRVGGEPL 87

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITR----IYRFWQKKDDNSIF-------FTLEP 132
            +   V H +P LSL   +  ED+  F  R    + R      +  +F       +  E 
Sbjct: 88  SAFDSVRHRVPMLSLNNAFADEDVLNFDRRCAQGLGRTAPAAGEADLFSAADAVEYACEL 147

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K DG  +++RYE G+ V AA RGDG +GEDV+  +R I  IP  L    P ++EVRGEV+
Sbjct: 148 KFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLKLRGQAPAVLEVRGEVF 207

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + + DF  LN      G K + NPRNAA+G LR+L+P     R L+FF +GLG+   +  
Sbjct: 208 MFRRDFDKLNARQAEAGEKTFVNPRNAAAGSLRQLDPRITARRPLSFFAYGLGELQGVER 267

Query: 252 KGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              +  ML     LG PV           G++ +Y ++   R  LPYDIDG+VYKV+  +
Sbjct: 268 PPTHSAMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGKRRDDLPYDIDGVVYKVNALA 327

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +R+PR+ ++HKF  ++ +T + DI++Q+GRTG +TPVARL PV +GG  +TN
Sbjct: 328 EQERLGFVSRAPRFALAHKFPAQEMTTVVEDIEVQVGRTGAITPVARLRPVFVGGVTVTN 387

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED I+            +D+ VGD V+V+RAG+VIP+VV ++   R  DA+ F  
Sbjct: 388 ATLHNEDEIR-----------RKDVHVGDTVIVRRAGDVIPEVVAVVAERRPADARAFVM 436

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S + +  +       A  RCTGGL C+AQ+ + L HF  R A +IEGLG + 
Sbjct: 437 PTACPVCGSHIEKLEDE------AIARCTGGLICAAQRKQSLLHFAQRRAMDIEGLGDRL 490

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           +R PAD++ L         K+  +    D S  NL  +I+K R  ++
Sbjct: 491 VEQLVDQG----IVRTPADLYKL------GVAKLAALERMADKSAANLVAAIDKSRATTM 540

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIRHVG   A+ LA+++        +++ ++A    D  +L+ V  VG ++AQ
Sbjct: 541 NRFIFALGIRHVGEATAKDLARHF-------GKLDALMAA---DEAALLEVNDVGPVVAQ 590

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS------SEIENKKLVFTGTLQKIQRH 664
           +I  F+  P N+  +E L      + G H           + +  K  V TGTL  + R 
Sbjct: 591 SIAHFFAEPHNVEVIEQLR-----AAGVHWPESEPVAKSPAPLSGKTFVLTGTLPTLSRE 645

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            A+E +   GA V+  +S+KTD ++ G   GSKL+KA+ LGV +++E
Sbjct: 646 DAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDE 692


>gi|53723744|ref|YP_103200.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344]
 gi|67639492|ref|ZP_00438344.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
 gi|121600643|ref|YP_993378.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1]
 gi|124385135|ref|YP_001029185.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10229]
 gi|126450807|ref|YP_001080885.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10247]
 gi|167004074|ref|ZP_02269848.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
 gi|254178005|ref|ZP_04884660.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
 gi|254206491|ref|ZP_04912843.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
 gi|254358100|ref|ZP_04974373.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
 gi|81604820|sp|Q62JB9|DNLJ_BURMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215563|sp|A3MKU9|DNLJ_BURM7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215564|sp|A2SB66|DNLJ_BURM9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215565|sp|A1V575|DNLJ_BURMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52427167|gb|AAU47760.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344]
 gi|121229453|gb|ABM51971.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1]
 gi|124293155|gb|ABN02424.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10229]
 gi|126243677|gb|ABO06770.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10247]
 gi|147753934|gb|EDK60999.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
 gi|148027227|gb|EDK85248.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
 gi|160699044|gb|EDP89014.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
 gi|238520039|gb|EEP83503.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
 gi|243060513|gb|EES42699.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
          Length = 691

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 268/726 (36%), Positives = 396/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  +  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G          +  +L     LG PVN          G++++++ +   R +LPYD
Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L  ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLTAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFAEKSARNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S         + +   ND     
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDALLEVND----- 568

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFT 655
                VG I+A++I +F+    N   +E L    K   P      +     +  K +V T
Sbjct: 569 -----VGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 TLLEGH 689


>gi|91788454|ref|YP_549406.1| DNA ligase [Polaromonas sp. JS666]
 gi|123164833|sp|Q12AD4|DNLJ_POLSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91697679|gb|ABE44508.1| DNA ligase, NAD-dependent [Polaromonas sp. JS666]
          Length = 706

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 263/718 (36%), Positives = 391/718 (54%), Gaps = 60/718 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +++L  E+  H   YY   +P I DSEYD L +    +  A+P+L     P+ P  ++GG
Sbjct: 23  MAALRAELHAHAHRYYVLDEPTIPDSEYDRLFKELQDLEAAYPELL---TPDSPTQRVGG 79

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQKKDDNS-IFFTLEPKIDGT 137
           +       V H +P LS+    + E    + F TR+ +     + N  + +  E K DG 
Sbjct: 80  KPLDQFASVRHKVPMLSIRTETDTEATGAQNFDTRVRKELGLTESNPPVEYVAELKFDGL 139

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++RYE G  V AA RGDG  GE+V+  IR I  IP  L  + P ++EVRGEVY+ + D
Sbjct: 140 AMSLRYEHGVLVQAATRGDGEVGEEVTQNIRTIRQIPLKLPSDAPPVLEVRGEVYMRRAD 199

Query: 198 FLALND---EMIAVG---RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT---- 246
           F ALND   E IA G    K + NPRNAA+G +R+L+P     R L+FF +G+G+     
Sbjct: 200 FEALNDKQREKIAAGAKGEKTFVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGVGEVVLEA 259

Query: 247 -----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                   +     E+LQ ++  GFPV    + A+    +++++  M   R +LPYDIDG
Sbjct: 260 EQANPKNPWVATHMELLQALKSWGFPVAAQTKIAHGASELIAFHQAMGQQRDSLPYDIDG 319

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKV+  +LQKQ+G  +R PRW ++HK+  ++  T +L I++Q+GRTG LTPVA+L PV
Sbjct: 320 VVYKVNSLALQKQMGFVSREPRWAVAHKYPAQEQLTTVLGIEVQVGRTGKLTPVAKLAPV 379

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG  +TNATLHNED  +            +D+RVGD V+V+RAG+VIP+VV ++ ++R
Sbjct: 380 FVGGVTVTNATLHNEDEAR-----------RKDVRVGDTVIVRRAGDVIPEVVSVLPDKR 428

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P A  F+ P  CP+C S  VR+         A +RCTGGL C AQ+ E + H+  R A 
Sbjct: 429 LPGAPMFTMPRQCPVCGSDAVREEGE------ADYRCTGGLFCGAQRKEAILHYAHRRAV 482

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
            IEGLG + ++        A  IR   D++ L        T + ++    + S  NL  +
Sbjct: 483 EIEGLGDKLVEQLVD----ANVIRTLPDLYKL------GLTALASLDRMAEKSANNLLKA 532

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + K +  +L RF+F LGIRHVG   A+ LA+++           N+ A  +     L+ V
Sbjct: 533 LEKSKQTTLPRFLFGLGIRHVGEATAKELARHF----------GNLDAIMDATQEQLLAV 582

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
             VG I+AQ+I  F+  P N   VE L    V    G         +  K  V TGTL  
Sbjct: 583 SDVGSIVAQSIRTFFDQPHNREVVEQLRACGVHWEEGEPAAVAPKPLSGKTFVITGTLPT 642

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R +A++ V   G  V+  +S+KTD ++ G   GSKL KAQ+LG+ +++E   + LL
Sbjct: 643 LSRDEAKDKVEAAGGKVAGSVSKKTDYVVAGTEAGSKLVKAQELGIAVIDEAALMRLL 700


>gi|186476101|ref|YP_001857571.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
 gi|254781277|sp|B2JID1|DNLJ_BURP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|184192560|gb|ACC70525.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
          Length = 683

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 260/710 (36%), Positives = 400/710 (56%), Gaps = 57/710 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+   +  YY   +P + D+EYD L +    I    PDL     P+ P  ++GGE+ 
Sbjct: 21  LRDELERANYAYYVLDQPDLPDAEYDRLFKELQQIESEHPDLIT---PDSPTQRVGGEVA 77

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                V H +P LSL   ++ ED+  F  R+           + +  E K DG  I++RY
Sbjct: 78  SGFRPVVHDMPMLSLNNGFSDEDIAAFDKRVSDTLHH---TPVDYACELKFDGLAISLRY 134

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALN 202
             G+F  AA RGDG +GEDV+  +R I +IP ++    +P++++VRGEV + + DF  LN
Sbjct: 135 VDGQFTQAATRGDGATGEDVTENVRTIRSIPLKLKGKRVPKLVDVRGEVLMFRRDFDKLN 194

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY-EMLQK 260
                 G++ +ANPRNAA+G LR+L+P     R L+FF +G+G    I   G + E+L  
Sbjct: 195 QRQRDAGQREFANPRNAAAGSLRQLDPKMTAQRPLSFFAYGIGVLDGIEMPGTHSELLDW 254

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
              +G PVN+         G++ +++++   R  LPYDIDG+VYKV+    Q  LG  +R
Sbjct: 255 YHEMGLPVNSERAVVQGAEGVLGFFHKVGEKRDKLPYDIDGVVYKVNRRDEQDALGFVSR 314

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLHNED ++
Sbjct: 315 APRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNEDEVR 374

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                       +DIR+GD V+V+RAG+VIP+VV  ++  R PDA+ F  P+ CP+C S 
Sbjct: 375 -----------RKDIRIGDTVIVRRAGDVIPEVVGALLERRPPDAREFVMPTQCPVCGSA 423

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + R  +       A  RC+GGL C AQ+ + L HF  R A +I+GLG++ +D   +    
Sbjct: 424 IERLPDE------AIARCSGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELN-- 475

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RFI++LGIR
Sbjct: 476 --LVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTTLARFIYALGIR 527

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG   A+ LA+++ S       ++ I++   ++   L+ V  VG I+A+AI +F+    
Sbjct: 528 HVGESTAKDLARHFGS-------LDPIMSATVEE---LLEVNDVGPIVAEAIHQFFAEEH 577

Query: 621 NICAVEAL-------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           N   +E L         E  P+     K     +  K +V TGTL  + R +A+E +   
Sbjct: 578 NRTVIEQLRAPGKVTWAEGPPA----PKAPQGVLAGKTVVLTGTLPNMGRDEAKELLEAA 633

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+   T
Sbjct: 634 GAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKLLEGQTT 683


>gi|58584805|ref|YP_198378.1| NAD-dependent DNA ligase, Lig [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75497767|sp|Q5GS88|DNLJ_WOLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|58419121|gb|AAW71136.1| NAD-dependent DNA ligase, Lig [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 683

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 272/718 (37%), Positives = 415/718 (57%), Gaps = 65/718 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E+  +E + L  +ISYHD  Y+Q SKP I D+EYD LK++   +    P    ++D   
Sbjct: 4   LEKMIEEFTKLRDQISYHDVLYHQKSKPEIADAEYDKLKQKLVEMEGQLPGACVTQDG-- 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
               +G   +    K+ H  P LSLE  ++ + + +F++RI RF  +++   I    EPK
Sbjct: 62  ----VGAAPDEKFSKIKHREPMLSLENAYDEQGVERFLSRIKRFLIEEE---IEVFCEPK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG   +  YE G+FV AA RGDG  GEDV+  +  I   PR L  ++ + +EVRGE+YI
Sbjct: 115 IDGLSFSAVYEDGRFVKAATRGDGFIGEDVTRNVATIKGFPRFLQ-DVQDRLEVRGEIYI 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           + +DFL LN +        +ANPRNAA+G L++L+ +    R L +F + L    E   K
Sbjct: 174 NNSDFLKLNKD------NEFANPRNAAAGSLKQLDVSITANRPLKYFAYSLIGGKE---K 224

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L ++  LGF VN      N   G++ +YN++ + R +L YDIDG+VYKV++  LQ
Sbjct: 225 SQSEVLNRLESLGFCVNEHRSLTNNLSGMLEFYNKVYNCRYSLDYDIDGIVYKVNDLILQ 284

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG   ++PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A 
Sbjct: 285 SRLGSTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLIPVNIGGVLVSRAN 344

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D IK            +D+R GD V +KRAG+VIP++V +    RH DA  F FP 
Sbjct: 345 LHNQDEIK-----------RKDVREGDIVTIKRAGDVIPQIVRVDKGSRHADAPGFVFPE 393

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C  +V  +         AA RC+  L C AQ + +L HFVS+ AF+I GLG++Q+ 
Sbjct: 394 ICPECGGKVQAE--------GAAIRCSEELTCKAQIIGKLSHFVSKGAFDIFGLGEKQIK 445

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           FF+   D     +IP DIF L+ R    + K +    +G+ S+ NL ++I  RR I+L+R
Sbjct: 446 FFY---DLGLIKQIP-DIFNLEERLNEFSLKEQP--DWGERSIANLLNAIQNRRVITLDR 499

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS-------------LI 599
           FIFSLGIR +G   A  LA YY+SY N+   +  +++++ +  +              L+
Sbjct: 500 FIFSLGIRFIGQVAAELLANYYVSYNNWYNSMIKLLSNDAEVGVGGVEKKIAKSFSDELV 559

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTG 656
            +  +G+ +A+++  F+    NI     +LK+++  +     +  + +S + NK +VFTG
Sbjct: 560 GIDGIGEKVAESLKSFFSKEHNI----KMLKDLTDYLQILSVNSNSSNSVLNNKVIVFTG 615

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            L  + R +A+     LGA VS+ LS K D ++ G+ PG+K +KA +LGV I+NE+Q+
Sbjct: 616 KLLTMSRGEAKVRAKALGAKVSSNLSAKIDYLVAGEKPGNKYKKAVELGVGILNEDQW 673


>gi|327394702|dbj|BAK12124.1| DNA ligase LigA [Pantoea ananatis AJ13355]
          Length = 672

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/713 (35%), Positives = 413/713 (57%), Gaps = 51/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ ++ L   + +H+  Y+    P + D+EYD L R    +    PDL     P+ 
Sbjct: 1   MKSVQEHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G    +   +V H +P LSL+  ++    R F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLMVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDD--LVYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE++++ +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           +++N F  LN E      K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 MTQNGFEKLNAEARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +     LQ+ +  G PV++ +R  +     +++Y+E+ + R+ L +DIDG+V KVD  
Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQ 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG  AR+PRW ++ KFA ++  T + D++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 DLQEKLGFVARAPRWAVAFKFAAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVMVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++V+ER  DA+   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREIL 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FPS CP+C S    D+    G+ V   RCTGGL C AQ+ E LKHFVSR A ++EG+G +
Sbjct: 404 FPSHCPVCGS----DVERVEGEAVT--RCTGGLICGAQRKEALKHFVSRRAMDVEGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     ++ PAD+F L R   T   ++      G  S  N+ D++ K ++ +
Sbjct: 458 IIDQLVEKE----YVKTPADLFRLTRETLTGLDRM------GAKSAQNVVDALEKAKSTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+++LGIR VG   A +LA ++   Q             + D  +LI V  VG ++A
Sbjct: 508 LARFLYALGIREVGEATAANLANHFGELQKVM----------DADLDALIAVQDVGTVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVS---PSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           + +  F +   N   +  L++++    P +     + + S    K +V TG+L ++ R  
Sbjct: 558 KHVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFAGKTVVLTGSLSQMNRDD 617

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  +T+LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 618 AKARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670


>gi|291618312|ref|YP_003521054.1| LigA [Pantoea ananatis LMG 20103]
 gi|291153342|gb|ADD77926.1| LigA [Pantoea ananatis LMG 20103]
          Length = 672

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/713 (35%), Positives = 413/713 (57%), Gaps = 51/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ ++ L   + +H+  Y+    P + D+EYD L R    +    PDL     P+ 
Sbjct: 1   MKSVQEHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G    +   +V H +P LSL+  ++    R F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLMVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDD--LVYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE++++ +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           +++N F  LN E      K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 MTQNGFEKLNAEARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +     LQ+ +  G PV++ +R  +     +++Y+E+ + R+ L +DIDG+V KVD  
Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQ 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG  AR+PRW ++ KFA ++  T + D++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 DLQEKLGFVARAPRWAVAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVAGVMVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++V+ER  DA+   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREIL 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FPS CP+C S    D+    G+ V   RCTGGL C AQ+ E LKHFVSR A ++EG+G +
Sbjct: 404 FPSHCPVCGS----DVERVEGEAVT--RCTGGLICGAQRKEALKHFVSRRAMDVEGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     ++ PAD+F L R   T   ++      G  S  N+ D++ K ++ +
Sbjct: 458 IIDQLVEKE----YVKTPADLFRLTRETLTGLDRM------GAKSAQNVVDALEKAKSTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+++LGIR VG   A +LA ++   Q             + D  +LI V  VG ++A
Sbjct: 508 LARFLYALGIREVGEATAANLANHFGELQKVM----------DADLDALIAVQDVGTVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVS---PSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           + +  F +   N   +  L++++    P +     + + S    K +V TG+L ++ R  
Sbjct: 558 KHVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFAGKTVVLTGSLSQMNRDD 617

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  +T+LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 618 AKARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670


>gi|251793989|ref|YP_003008721.1| NAD-dependent DNA ligase LigA [Aggregatibacter aphrophilus NJ8700]
 gi|247535388|gb|ACS98634.1| DNA ligase, NAD-dependent [Aggregatibacter aphrophilus NJ8700]
          Length = 671

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 261/712 (36%), Positives = 409/712 (57%), Gaps = 67/712 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L + + YH+  Y+   +P I DSEYD L  +  A+    P L  ++ P     +
Sbjct: 6   QQQIDDLRKTLRYHEYQYHVLDEPQIPDSEYDRLFHQLKALEQQHPALITADSPT---QR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G        ++ H +P LSL+  ++ E+   F+ RI        D  +F      F  E
Sbjct: 63  VGARPLSEFAQIKHELPMLSLDNAFSDEEFLAFVKRI-------QDRLVFAPEPLTFCCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G    AA RGDG +GED++  IR I  IP ++L+ N P  +EVRGE
Sbjct: 116 PKLDGLAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           V++  + F  LN+  +  G K +ANPRNAA+G LR+L+P   + R L F  + +G    I
Sbjct: 176 VFMPHDGFERLNERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQRI 235

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E LQ ++ +G PVN+ +R  +    ++++Y  M   RS+L YDIDG V KV++
Sbjct: 236 DLPPTHFERLQWLKSIGVPVNSEIRLCDGIENVLNFYRTMMEKRSSLGYDIDGTVLKVND 295

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L+PV + G  +
Sbjct: 296 IELQQRLGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTV 355

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ + R  +A+  
Sbjct: 356 SNATLHNGDEIERL-----------NIAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQI 404

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S +VR      G+ VA  RCTGGL C+AQ+ E LKHFVSR A NI+G+G 
Sbjct: 405 VFPTHCPVCDSLIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMNIDGVGA 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L     T+ T++E +   G  S  N   S+ K ++ 
Sbjct: 459 KLIEQLVDRE----LVHTPADLFKLDL---TTITRLERM---GPKSAENALASLEKAKHT 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFIF+LGIR VG  IA +LA ++ + +          A  N D   L +VP VG+++
Sbjct: 509 TLARFIFALGIRDVGEAIALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVV 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQ 662
           A  I  F++   N+  V  L+ +     G H + V  +       ++K +V TGTL ++ 
Sbjct: 559 ANRIFVFWREEHNVAVVNDLIAQ-----GVHWETVEVQEVKENPFKDKTVVLTGTLSQMG 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           R+ A+  + QLGA VS  +S KTD +I G+  GSKL KA +LGV++++EE+F
Sbjct: 614 RNDAKVLLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEF 665


>gi|323526494|ref|YP_004228647.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1001]
 gi|323383496|gb|ADX55587.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1001]
          Length = 688

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 262/705 (37%), Positives = 392/705 (55%), Gaps = 49/705 (6%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+   +  YY   +P + D+EYD L +  ++I    PDL     P+ P  ++GGE  
Sbjct: 21  LRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAQHPDLIV---PDSPTQRVGGEAA 77

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW---QKKDDNSIFFTLEPKIDGTMIT 140
                V H  P LSL   +  ED+  F  R+        K+    + +  E K DG  I+
Sbjct: 78  SGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGNNAKEPPVPVDYATELKFDGLAIS 137

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           +RY  G FV AA RGDG +GE+V+  IR + +IP ++    +P I++VRGEV + K DF 
Sbjct: 138 LRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLKLKGKRVPHILDVRGEVLMFKRDFE 197

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY-EM 257
            LN+   A G K +ANPRNAA+G LR+L+P     R L+FF +G+G    +     + E+
Sbjct: 198 RLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMEMPATHSEL 257

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L   + LG PVN+         G+++++  +   R  LPYDIDG+VYKV+    Q  LG 
Sbjct: 258 LDWYKELGLPVNSERAVVKGAEGLLAFFRAVGEKRDKLPYDIDGVVYKVNRRDEQDALGF 317

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLHNED
Sbjct: 318 VSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNED 377

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            ++            +DIR+GD V+V+RAG+VIP+VV  ++  R  DA+ F  P+ CP+C
Sbjct: 378 EVR-----------RKDIRIGDTVIVRRAGDVIPEVVSALLERRPDDAREFVMPTHCPVC 426

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S + R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D   + 
Sbjct: 427 GSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQ 480

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +R PAD+F L        + +  +  F D S  NL DS+ K ++ +L RFI++L
Sbjct: 481 N----LVRTPADLFNL------GFSTLAELDRFADKSAQNLLDSLEKAKHTTLARFIYAL 530

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG   A+ LAK++ S     +     +   ND          VG ++A++I +F+ 
Sbjct: 531 GIRHVGESTAKDLAKHFGSLDPIMEASVEALLEVND----------VGPVVAESIHQFFA 580

Query: 618 NPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
              N   +E L    K   P      K     +  K +V TGTL  + R +A+E +   G
Sbjct: 581 EEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGTLPTLAREEAKEMLEAAG 640

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 641 AKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKLLE 685


>gi|183599716|ref|ZP_02961209.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827]
 gi|188021975|gb|EDU60015.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827]
          Length = 671

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/709 (35%), Positives = 404/709 (56%), Gaps = 49/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ L +L+Q++ +H+  Y+    P I D+EYD L     AI    P+   S+ P     +
Sbjct: 4   KQHLDTLKQQLRHHEYQYHVLDAPEIPDAEYDKLMEELKAIEAEHPEWITSDSPT---QR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +   V H IP LSL+ +++ E    F  R+    + KD     F  E K+DG 
Sbjct: 61  VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRD--RLKDQQEQTFCCELKLDGL 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ YE G+ V AA RGDG  GE++++ +R I  IP R+   NIP  +E+RGEV++ + 
Sbjct: 119 AVSLLYENGELVQAATRGDGTVGENITSNVRTIRAIPLRLTGENIPARVEIRGEVFMPQK 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAKGQ 254
            F ALN+E    G K +ANPRNAA+G LR+L+P     R L F+ +G+G    E      
Sbjct: 179 GFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGETLPDTH 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE L + +  G PV+  V+       ++ +Y+E++  R TL +DIDG+V K+++ + Q++
Sbjct: 239 YERLMQFKKWGLPVSEYVQLRTGAQAVLDFYHEIEKARPTLGFDIDGVVIKINDIATQEE 298

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW  + KF  ++  T L D++ Q+GRTG +TPVARLEPV + G  ++NATLH
Sbjct: 299 LGFVSRAPRWATAFKFPAQEQMTLLKDVEFQVGRTGAITPVARLEPVQVAGVTVSNATLH 358

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            + +GD V+++RAG+VIP++V ++ +ER  D++   FP+ C
Sbjct: 359 NADEIERL-----------GVHIGDTVVIRRAGDVIPQIVSVVESERPADSREIVFPTHC 407

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G + +D  
Sbjct: 408 PVCGSDVER----VEGEAVA--RCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     ++ PAD++      Q S   +  +   G  S  NL +++NK ++ +L RFI
Sbjct: 462 VEKE----YVKNPADLY------QLSAGILTGLDRMGPKSAQNLVEALNKSKSTTLARFI 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA +Y + +               D  SL  V  VG ++A+ +V 
Sbjct: 512 YALGIREVGEATAANLAAHYGTLEALMAA----------DEESLKTVQDVGHVVAKHVVN 561

Query: 615 FYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F++   N   ++AL+ + +     ++      + S    K +V TG+L ++ R +A++ +
Sbjct: 562 FFREEHNQTVIQALIDKANIHWPEAVAVDVSTIDSPFAGKTVVLTGSLSQLTRDEAKDKL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             LGA VS  +S+KT ++I G+  GSKL KA +LG+ +++E + + LL+
Sbjct: 622 VALGAKVSGSVSKKTHLVIAGEAAGSKLAKANELGIPVIDENELIRLLE 670


>gi|90021526|ref|YP_527353.1| DNA ligase (NAD+) [Saccharophagus degradans 2-40]
 gi|123090491|sp|Q21JI8|DNLJ_SACD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89951126|gb|ABD81141.1| DNA ligase, NAD-dependent [Saccharophagus degradans 2-40]
          Length = 674

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 262/706 (37%), Positives = 407/706 (57%), Gaps = 47/706 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L SL+ +I+YH+  YY    P + D+EYD L +   AI   FP+L  +ED   P  ++G
Sbjct: 10  KLESLKNQINYHNKLYYVLDAPELPDAEYDKLFQELQAIEQQFPELV-TED--SPTQRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                S   + H  P LSL+ ++N+E+L  F  RI    +   D S+ ++ EPK DG   
Sbjct: 67  AAPLDSFASIEHKRPMLSLDNVFNVEELFAFDKRIRD--RINADASLEYSCEPKFDGIAA 124

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           ++ YE G+   AA RGDG  GED++  +R I ++P ++   NIP ++EVRGEVY+ K  F
Sbjct: 125 SLLYENGRLKTAATRGDGTVGEDITQNMRTIGSVPLKLEGNNIPAVLEVRGEVYMPKAGF 184

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTSEIFAKGQY 255
           L +N+E +A   K + NPRNAA+G LR+LNP     R L F  + +G  +  E+ A   Y
Sbjct: 185 LRINEEALAKNEKTFVNPRNAAAGSLRQLNPQITAKRPLVFCAYNVGVVEGGELPAT-HY 243

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L ++   GF V+   R A       +YY+ +++ R +L YDIDG+V+KV+ F LQ++L
Sbjct: 244 ETLTQLFEWGFLVSEERRIAKGIEECEAYYHYLEAKRESLAYDIDGIVFKVNAFDLQERL 303

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I+HKF  ++A T L D++ Q+GRTG +TPVA+L+P+ +GG  ++NATLHN
Sbjct: 304 GFVSRAPRWAIAHKFPAQEALTVLHDVEFQVGRTGAITPVAKLQPIFVGGVTVSNATLHN 363

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           +D I+ L            IRVGD V+V+RAG+VIP++V I+ ++R  DA+   FP+ CP
Sbjct: 364 KDEIERL-----------GIRVGDTVIVRRAGDVIPQIVSIVESKRPQDAREIKFPTACP 412

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S    D+    G+  AA RCTGGL C AQ+ E +KHF SR A +I+GLG + +D   
Sbjct: 413 VCGS----DVESVEGE--AAIRCTGGLVCEAQRKESIKHFASRQAMDIDGLGDKIVDQLV 466

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            ++     +   AD++TL          +  +   G  S  NL  +I   +  SL++ ++
Sbjct: 467 DNK----LVNDVADLYTL------DIPTLAGLERLGAKSAANLVAAIEASKQTSLDKILY 516

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   AR+LA ++ +       +N ++    +    LI V  VG ++A  +V+F
Sbjct: 517 ALGIREVGRATARNLANHFCT-------LNKVMDATQE---QLIEVTDVGPVVAHYVVDF 566

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +    N   +E L+          + +    +E    V TG+L+ + R +A++ +  LGA
Sbjct: 567 FAQANNREVIEKLIAAGVNWPDIEKVDGVKPLEGTTYVLTGSLESLSRDEAKDKLQALGA 626

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            VS  +S KT  ++ G   GSKL KA++LG+ I++E   L LL+++
Sbjct: 627 KVSGSVSAKTTCVVAGPGAGSKLAKAEKLGLAILDEVGLLALLEEH 672


>gi|304312656|ref|YP_003812254.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1]
 gi|301798389|emb|CBL46613.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1]
          Length = 677

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 258/709 (36%), Positives = 399/709 (56%), Gaps = 46/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E  +L  ++  H+  YY    P + DSEYD L +R  A+  A PDL   + P     +
Sbjct: 9   REEAQALRAQLQEHNYRYYVLDDPSVPDSEYDRLFQRLLALEQAHPDLITQDSPT---QR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +  +V H +P LSL+ ++N  +L  F  RI+   + K +  + F  EPK+DG 
Sbjct: 66  VGAAPLAAFKQVQHRVPMLSLDNVFNAAELLAFEKRIHD--RLKSEVPVDFVCEPKLDGL 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G FV  A RGDG +GED++  +R + T+P R++    P  +EVRGEVY+ K 
Sbjct: 124 AVSLLYRDGLFVQGATRGDGETGEDITQNLRTLSTVPLRLMGEGFPSELEVRGEVYMPKA 183

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255
               LN    + G K +ANPRNAA+G LR+L+P     R L  + +G+G  +      ++
Sbjct: 184 GLAELNQRQTSAGDKTFANPRNAAAGSLRQLDPRITAKRPLELYCYGIGHVAGGTLPARH 243

Query: 256 E-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L  +   GF VN  +R A        YY+ + + R  L YDIDG+VYKVDE +LQ++
Sbjct: 244 SAILAALGKWGFRVNPEIRSAANAAECQRYYDALLARRDALAYDIDGVVYKVDELALQQR 303

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I+HKF  ++  TRLLD++ Q+GRTG +TPVARLEPV +GG  ++NATLH
Sbjct: 304 LGFVSRAPRWAIAHKFPAQEEITRLLDVEFQVGRTGAVTPVARLEPVYVGGVTVSNATLH 363

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L           DI VGD V+V RAG+VIP++V ++   R P A     P+ C
Sbjct: 364 NMDEVARL-----------DIHVGDTVVVLRAGDVIPRIVRVLPERRPPYAPVVMLPAAC 412

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S + R+     G+ VA  RC+GGL C AQ  E +KHF +R A +I+GLG + +D  
Sbjct: 413 PVCGSAITRE----EGEAVA--RCSGGLFCPAQTKEAIKHFSARRAMDIDGLGDKIVDQL 466

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
               D      + AD+++L      +  ++      G+ S   L  +I K RN + +RF+
Sbjct: 467 V---DTGLVASV-ADLYSLASASLAALERM------GEKSADKLVAAIAKSRNTTFQRFL 516

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA++Y            + A    D  SL+ VP +G + A+ IV+
Sbjct: 517 FALGIREVGEATAQTLARHY----------ETLDALLRADEASLLEVPDIGPVSARNIVQ 566

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+  P N   ++ LL          + +VS+  + ++ LV TG+L ++ R +A +++  L
Sbjct: 567 FFAQPHNREVLDRLLAAEIHWPAPVKADVSALPLSDQTLVLTGSLSQLSRDEAGDHLRAL 626

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           GA VS  +S+ T  +  G+  GSKL +A+ LG+ +  E++ + LL+++ 
Sbjct: 627 GAKVSGSVSKNTTAVYAGEKAGSKLARAESLGIPVYTEDELMSLLREHG 675


>gi|127513305|ref|YP_001094502.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4]
 gi|166216242|sp|A3QFJ5|DNLJ_SHELP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126638600|gb|ABO24243.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4]
          Length = 669

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 403/712 (56%), Gaps = 60/712 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + E+  L  E++ H+  YY    P I D+EYD L RR   +    P+LA ++ P     +
Sbjct: 5   QDEIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALADSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE      +VTH  P LSL+ +++ E+   F  R+      K  ++  F  EPK+DG 
Sbjct: 62  VGGEALSKFNQVTHLKPMLSLDNVFSEEEFNAFYKRV----GDKLPDTPAFCCEPKLDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            ++I Y  G F  AA RGDG  GED++  +R I ++P R+     P ++EVRGEV++ K 
Sbjct: 118 AVSILYRDGVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVRGEVFMPKA 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTSEIFAK 252
            F A+ND+  A G K + NPRNAA+G LR+L+     +R L F+ + LG     +   A 
Sbjct: 178 AFEAVNDKARAKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPETWPLAA 237

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +E L +++  G PV++ V+       +++YY ++ + RS L Y+IDG+V KV++ + Q
Sbjct: 238 SHFEQLVQLKEWGCPVSSEVKVCADIPSVLAYYQDILTRRSELAYEIDGVVLKVNDIAQQ 297

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A++PRW  ++KF  ++  T+L  +D Q+GRTG +TPVARL+PV +GG  ++NAT
Sbjct: 298 QTLGFVAKAPRWATAYKFPAQEEITQLEGVDFQVGRTGAVTPVARLQPVFVGGVTVSNAT 357

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I  L            + +GD V+++RAG+VIP+VV ++  +R  DAQ   FP 
Sbjct: 358 LHNADEIARL-----------GVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQAIQFPP 406

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S V R      G+ VA  RCTGGL C AQ+ E +KHF SR A +I+G+G + ++
Sbjct: 407 QCPVCGSDVER----VEGEAVA--RCTGGLVCEAQRKEAIKHFASRKALDIDGMGDKVVE 460

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     +  PAD+F L      + + I  +   G  S TNL +++   +  +  R
Sbjct: 461 QLIDKE----LVASPADLFKL------TASAITMLDRMGMKSATNLVNALEAAKQTTFAR 510

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F++SLGIR VG   A +LA Y+ + ++  Q           D  + ++V  VG I+AQ +
Sbjct: 511 FLYSLGIREVGEATAANLANYFKTLEHLKQA----------DAETFMKVDDVGVIVAQHL 560

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGTLQKIQRHKA 666
           V F++ P N+  ++ LL+      G H  ++         ++ +  V TGTL ++ R+ A
Sbjct: 561 VHFFEQPHNLEVIDGLLQ-----AGVHWPDIEEVAEEALSLKGQTWVLTGTLTQLNRNDA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++E + L +L
Sbjct: 616 KAKLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQELGVKVIDEAELLAIL 667


>gi|37679166|ref|NP_933775.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus YJ016]
 gi|81758078|sp|Q7MMT5|DNLJ_VIBVY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|37197908|dbj|BAC93746.1| NAD-dependent DNA ligase [Vibrio vulnificus YJ016]
          Length = 669

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/709 (35%), Positives = 396/709 (55%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  ++ L  L+Q++ YH   YY    P I D+EYD + R   AI    P+    + P+  
Sbjct: 3   ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG    S  +VTH IP LSL+  ++ E+L  F+ R          ++  F  EPK+
Sbjct: 61  -QRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDA--FCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I ++P ++     P  IEVRGEV++
Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251
            K  F  LND     G K + NPRNAA+G LR+L+     TR L F+ + +G    I  +
Sbjct: 178 PKVGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y+   +++  G P+    +  N    + ++Y ++ + R  LPY+IDG+V K+D+  +
Sbjct: 238 SSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIVI 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QEKLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + VGD V+++RAG+VIP++V ++   R  D  P  FP
Sbjct: 358 TLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKERRKGDENPIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 TSCPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+FTL     T   ++      G  S  N+ +++N  +  +L 
Sbjct: 461 EQLVDKE----MVETPADLFTLSAGVLTVLERM------GPKSAQNIVNALNVAKETTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ + +      +            LI VP +G+++A+ 
Sbjct: 511 RFLYSLGIREVGEATAANLARHFKTLEAIQTATHE----------QLIEVPDIGEVVARH 560

Query: 612 IVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   V+AL+++  V P +      +   +  K +V TGTL ++ R  A+  
Sbjct: 561 ITAFFAEEKNQRVVQALIEQGIVWPPVEELGSEIPQPLAGKVVVLTGTLTQLSRGDAKAA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +LGA V+  +S+KTDI+  G+  GSKL KAQ+LGV+I  E+  L LL
Sbjct: 621 LERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669


>gi|167563194|ref|ZP_02356110.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis EO147]
          Length = 691

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 263/729 (36%), Positives = 403/729 (55%), Gaps = 59/729 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  +  Q  K  + L  E+   +  YY   +P + D+EYD L      +    PDL  
Sbjct: 5   PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P  P  ++GGE+      V H  P LSL   ++ ED+  F  R+     K  D    
Sbjct: 63  --TPESPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN 180
             + + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + ++P ++   +
Sbjct: 121 VTDPVEYACELKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVPLKLKGKH 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G    +        +L     LG PVN          G++ +++ +   R +LPYD
Sbjct: 241 AYGIGVLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C S + R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTACPECGSGIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS++K ++ +L RFI++LGIRHVG   A+ LAK++ S           +   ND     
Sbjct: 514 IDSLDKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASIEALLEVND----- 568

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKL 652
                VG I+A++I +F+    N   +E L           P   R  + V   +  K +
Sbjct: 569 -----VGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGV---LAGKTV 620

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++EE
Sbjct: 621 VLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEE 680

Query: 713 QFLFLLQQY 721
               LL+ +
Sbjct: 681 GMHKLLEGH 689


>gi|206579402|ref|YP_002237241.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342]
 gi|288934177|ref|YP_003438236.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
 gi|254781350|sp|B5XVT4|DNLJ_KLEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206568460|gb|ACI10236.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342]
 gi|288888906|gb|ADC57224.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
          Length = 671

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/715 (35%), Positives = 413/715 (57%), Gaps = 52/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDD--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  + AA RGDG +GED+++ +R I TIP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A      LQ+ +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  
Sbjct: 236 PAS-HSARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   
Sbjct: 355 NATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+CQS V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCQSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      S  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------SAGKLTGLDRMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA ++ + +   Q               L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAALAAHFGTLEALEQA----------SIEELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
                F+    N   +  LL E     +P + + E+ + S    K +V TG+L ++ R  
Sbjct: 558 THTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEE-IDSPFAGKTVVLTGSLSQLSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|153872826|ref|ZP_02001606.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
 gi|152070708|gb|EDN68394.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
          Length = 670

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 264/716 (36%), Positives = 407/716 (56%), Gaps = 65/716 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q +++ + L   ++  +  YY   +P I DSEYD L R   A+   +P L  ++ P    
Sbjct: 6   QIQQQATQLRDTLNKQNYYYYVLDEPRIPDSEYDKLMRELHALEENYPALITADSPT--- 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +   +  +V H+IP LSL   ++ ++++ F  R+    ++     + +  EPK+D
Sbjct: 63  QRVGAKPLTAFSEVIHTIPMLSLNNAFDDKEVQDFDKRVR---ERLGGEPVEYVAEPKLD 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  I++RYE G  V AA RGDGH GEDV+  ++ I TIP R+L  + P ++EVRGEV++S
Sbjct: 120 GLAISLRYENGLLVKAATRGDGHQGEDVTQNVKTIKTIPLRLLGDDYPRVLEVRGEVFMS 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K DF  LN +    G+K +ANPRNAA+G LR+L+     TR L F  + +G    +   G
Sbjct: 180 KADFEKLNQQQTLQGQKTFANPRNAAAGSLRQLDSRVTATRSLTFLAYTIG----VVEGG 235

Query: 254 QY-----EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++L  ++  G P++  +   +   G + YY      R  LP++IDG+VYKV+ 
Sbjct: 236 ELPHRHNKILYTLQKWGIPISIYIEMVHDIQGCLKYYQNTLLYREKLPFEIDGVVYKVNS 295

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+ LG  +R+PRW I+HK   ++  T +L ID+Q+GRTG LTPVARL PV +GG  +
Sbjct: 296 LEQQEILGFVSRAPRWAIAHKLPAQEVLTEVLAIDVQVGRTGALTPVARLAPVTVGGVTV 355

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHN+D I             ++IRVGD V+V+RAG+VIP++V ++  +R  + QPF
Sbjct: 356 TNATLHNQDEID-----------RKNIRVGDTVIVRRAGDVIPEIVGVLPEKRPNNTQPF 404

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CPIC S V R      G+ VA  RCTGGL C+AQ+ + ++HF SR A +I+GLG+
Sbjct: 405 VLPKKCPICDSDVTR----VEGEAVA--RCTGGLYCAAQRKQAIQHFASRRAMDIDGLGE 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++    +E     ++  ADI+TL   Q        N+   G  S  N+  ++ K ++ 
Sbjct: 459 KLVEQLINNE----LVKNIADIYTLNHEQWA------NLERMGPKSAENIIKALEKSQST 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  +F+++LGIR VG   A +LA      Q+F + +  +I     D   L ++  +G I+
Sbjct: 509 TFAKFLYALGIREVGESTAHTLA------QSFGR-LEKLIPATEAD---LEQIQDIGPIV 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSE----IENKKLVFTGTLQKIQ 662
           A+ IV F+Q   N   ++ L +     IG H  E   +S     +  +  V TGTL  I 
Sbjct: 559 AKHIVTFFQQSHNREIIQRLQQ-----IGIHWPENEPTSTNTQPLSGQTFVLTGTLTNIT 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           RH+A+  +  LGA VS  +S+KT  ++ G+  GSKLEKA+ LG+KI++E  FL LL
Sbjct: 614 RHEAKARLEALGAKVSGSVSKKTACVVAGEKAGSKLEKARTLGIKIIDENAFLALL 669


>gi|121533514|ref|ZP_01665342.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
 gi|121308073|gb|EAX48987.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
          Length = 673

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 264/715 (36%), Positives = 391/715 (54%), Gaps = 58/715 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++EQA +E   L ++I YH+  YY    P I D+E+DAL RR  AI  A+P L     P+
Sbjct: 8   TLEQAAREAEQLRRQIHYHNHRYYVLDAPEISDAEFDALMRRLIAIEEAYPSLI---TPD 64

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       +  H  P LSL   ++ EDLR F  R+ R     D     + +E 
Sbjct: 65  SPTQRVGGAPAEGFDRTLHLTPMLSLANAFSAEDLRAFDNRV-RSGLGVDKAE--YVVEL 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191
           KIDG  + + YE G+ V  A RGDG  GEDV+A +R I ++P VL +N  P ++EVRGEV
Sbjct: 122 KIDGLAVNLVYEAGRLVRGATRGDGQYGEDVTANVRTIRSVPLVLPVNDPPALLEVRGEV 181

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+ + +F  LN+E  A G   +ANPRNAA+G LR+L+P     R L+ FV+  G+   + 
Sbjct: 182 YMPRREFDRLNEERQAAGEALFANPRNAAAGSLRQLDPRVTAQRALDIFVYATGRREGLN 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L+ +  LGF VN   R   +   ++ Y       R  LPYDIDGLV K++  +
Sbjct: 242 METHAQTLETLAALGFKVNPHYRVFGSIEEVIDYCYSWNERRVDLPYDIDGLVIKLNSLA 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+ PRW I+ KF  +QA+T + DI +++GRTG+LTP A+L PV + G+ ++ 
Sbjct: 302 GQARLGATAKDPRWAIAFKFPAEQATTIVEDIFVRVGRTGVLTPTAQLRPVRLAGSTVSR 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI+            +DIR+GD V++ +AGEVIP+VV ++ + R+   +PF  
Sbjct: 362 ATLHNEDYIR-----------DKDIRIGDTVIIHKAGEVIPEVVAVVASRRNGSERPFVM 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S VVR+         AAH+C    AC A   E L HFVSRDA NIEGLG   
Sbjct: 411 PDRCPECGSPVVREPGE------AAHKCVNS-ACPAMLREGLIHFVSRDAMNIEGLGPAV 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +         A  +R  AD++ L+    T   ++      G  S  NL  +I   +   L
Sbjct: 464 IGSLLD----AGLVRDAADLYALRFDDLTKLDRM------GPKSAQNLLQAIEASKEAGL 513

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F+LGIR VGA+ A +LA+++           +I A        L+ +  +G  IA+
Sbjct: 514 ARLLFALGIRFVGAKAAGTLARHF----------GSIHALERATVEELMALEEIGPKIAE 563

Query: 611 AIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           ++  ++ +P+NI  V  L      + E  P+  R        +     V TGTL  + R 
Sbjct: 564 SVANYFADPQNIALVRKLEAAGVKVTEERPAAKRQ------TLAGITFVLTGTLATMTRA 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A E +   G  VS+ +S+KT+ ++ G+  GSKL+KA++LG+ ++ E +F  LL+
Sbjct: 618 EATELIESRGGKVSSSVSKKTNYVVAGEEAGSKLDKARELGIPVLTEGEFKKLLE 672


>gi|253988889|ref|YP_003040245.1| NAD-dependent DNA ligase LigA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780339|emb|CAQ83500.1| DNA ligase [Photorhabdus asymbiotica]
          Length = 672

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/710 (35%), Positives = 408/710 (57%), Gaps = 51/710 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++ +L + + +H+  Y+    P I D+EYD L +    +    P+L  S+ P     ++
Sbjct: 6   QQIENLRKTLRHHEYLYHVMDAPEISDAEYDRLMQELKTLEGQHPELITSDSPT---QRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G     +  +V H IP LSL+ +++ E    F  R+    + KD   +    E K+DG  
Sbjct: 63  GAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRD--RLKDTQDLVVCCELKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G+ V AA RGDG +GE++++ +R I  +P R++  NIP  IEVRGEV++ +N 
Sbjct: 121 VSLLYENGELVRAATRGDGTTGENITSNVRTINAVPLRLIGENIPARIEVRGEVFMPQNG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQ 254
           F  LN+E    G K +ANPRNAA+G LR+L+P     R L F  +G+G  +  E+ A   
Sbjct: 181 FEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFLCYGVGVLEGGELPAS-H 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE L + +  G PV++ VR     + ++ +Y  +++ RSTL +DIDG+V KV+   LQ+ 
Sbjct: 240 YERLMQFKKWGLPVSDKVRVCTDSNQVIDFYRNIENQRSTLGFDIDGVVIKVNSLELQET 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW  + KF  ++  T + DI+ Q+GRTG +TPVARLEPV + G  ++NATLH
Sbjct: 300 LGFVARAPRWATAFKFPAQEQMTIVRDIEFQVGRTGAITPVARLEPVQVSGVTVSNATLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            +R+GD V+++RAG+VIP+VV ++ + R  D+    FP +C
Sbjct: 360 NADEIERL-----------GLRIGDTVIIRRAGDVIPQVVGVVEDRRPQDSDEVIFPEYC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C +    D+    G+ VA  RCTGGL C AQ+ E L+HFVSR A +++G+G++ +D  
Sbjct: 409 PVCGA----DIEKIEGEAVA--RCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKIIDQL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     +  PAD+F L      +  K+  +   G  S  N+ D++ K +  +  RF+
Sbjct: 463 VDKE----YVETPADLFRL------TAGKLTGLDRMGPKSAQNVVDALEKAKKTTFARFL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA Y+        ++N + A + +   +L  V  VG+++A+ +V 
Sbjct: 513 YALGIREVGEATAANLAAYF-------GDLNKLRAADEE---ALKEVQDVGEVVAKHVVH 562

Query: 615 FYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F+  P N   ++ L+  +     P      + + S    K +V TG+L ++ R +A++ +
Sbjct: 563 FFNEPHNQKVIDDLIDNIGINWEPIAVTKAEKIDSPFAGKTIVLTGSLHQLSRDEAKDKL 622

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             LGA V+  +S+KTD++I G+  GSKL KA +L + +++EE+ + LL +
Sbjct: 623 IALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIAVIDEEEMIRLLGE 672


>gi|290508381|ref|ZP_06547752.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
 gi|289777775|gb|EFD85772.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
          Length = 671

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/715 (35%), Positives = 413/715 (57%), Gaps = 52/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDD--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  + AA RGDG +GED+++ +R I TIP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A      LQ+ +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  
Sbjct: 236 PAS-HSARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQITFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   
Sbjct: 355 NATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+CQS V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCQSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      S  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------SAGKLTGLDRMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA ++ + +   Q               L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAALAAHFGTLEALEQA----------SIEELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
                F+    N   +  LL E     +P + + E+ + S    K +V TG+L ++ R  
Sbjct: 558 THTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEE-IDSPFAGKTVVLTGSLSQLSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|94310370|ref|YP_583580.1| DNA ligase, NAD-dependent [Cupriavidus metallidurans CH34]
 gi|123383876|sp|Q1LNG5|DNLJ_RALME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|93354222|gb|ABF08311.1| DNA ligase, NAD(+)-dependent [Cupriavidus metallidurans CH34]
          Length = 721

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 269/744 (36%), Positives = 389/744 (52%), Gaps = 92/744 (12%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +E+  +   YY    P I D++YDAL     A+    P+L     P+ P  ++GG   
Sbjct: 27  LREELERYSYQYYVLDAPTIPDADYDALFIELQALEAEHPELL---TPDSPTQRVGGAPL 83

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK---------------DD----- 123
            +   V H +P LSL   +  ED+  F  R  +   +                DD     
Sbjct: 84  SAFDSVRHRVPMLSLNNGFEDEDVINFDRRCAQGLGRATAAAPAAFATPAAPADDLFSAA 143

Query: 124 -----------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172
                      N++ +  E K DG  +++RYE G  V AA RGDG +GEDV+A +R I  
Sbjct: 144 DAAEAAANTAGNAVEYACELKFDGLAMSLRYENGTLVQAATRGDGETGEDVTANVRTIKA 203

Query: 173 IPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TD 231
           IP  L    P ++EVRGEV++ + DF  LN      G K + NPRNAA+G LR+L+P   
Sbjct: 204 IPLKLRGTAPSVLEVRGEVFMYRADFDKLNARQAESGEKTFVNPRNAAAGSLRQLDPRIT 263

Query: 232 ITRYLNFFVHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
             R L+FF +G+G+       G +  ML     LG PV +  R      G++S++ E+  
Sbjct: 264 AKRPLSFFAYGVGEMEGFDRPGTHSAMLDGFAKLGLPVCDERRVVRGAQGLLSFHREVGE 323

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  LPYDIDG+VYKV+  + Q+QLG  +R+PR+ ++HKF  ++ +T + DI++Q+GRTG
Sbjct: 324 RRDQLPYDIDGVVYKVNAIAEQEQLGFVSRAPRFALAHKFPAQEMTTTVEDIEVQVGRTG 383

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVARL PV +GG  +TNATLHNED I+            +D+ +GD V+V+RAG+VI
Sbjct: 384 AITPVARLAPVFVGGVTVTNATLHNEDEIR-----------RKDVHIGDTVIVRRAGDVI 432

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+VV +++  R  DA+ F  P+ CP+C S V R      G+ +A  RCTGGL C+AQ+ +
Sbjct: 433 PEVVAVVLERRPADARAFVMPTECPVCGSHVER----LEGEAIA--RCTGGLICAAQRKQ 486

Query: 471 RLKHFVSRDAFNIEGLG----KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526
            L HF  R A +IEGLG    +Q +D           +R PAD++ L         K+  
Sbjct: 487 ALLHFAQRRAMDIEGLGDKVVEQLVDLGI--------VRTPADLYKL------GVAKLAA 532

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           +    D S +NL  +I + R  ++ RFIF+LGIRHVG   A+ LAK++    N       
Sbjct: 533 LDRMADKSASNLVAAIEQSRETTMNRFIFALGIRHVGEATAKDLAKHFGKLDNLLAADEA 592

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHE 640
            +   ND          VG ++AQ+I  F   P N+  +E L        E  P+     
Sbjct: 593 ALLEVND----------VGPVVAQSIANFIAEPHNVEVIEQLRAAGVHWAETEPT----- 637

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
                 +  K  V TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKLEK
Sbjct: 638 ARAPLPLAGKTFVLTGTLPTMSREDAKEKLEAAGAKVAGSVSKKTDYVVAGAEAGSKLEK 697

Query: 701 AQQLGVKIMNEEQFLFLLQQYNTT 724
           AQ LGV +++EE  L LL +    
Sbjct: 698 AQTLGVAVLDEEGMLKLLAEVGAA 721


>gi|289208742|ref|YP_003460808.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
 gi|288944373|gb|ADC72072.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
          Length = 697

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 262/718 (36%), Positives = 389/718 (54%), Gaps = 59/718 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L ++I +H+  YY    P + D+E+DAL R  + +    PDL     P+ P  ++
Sbjct: 20  ERIEQLRRQIEHHNYRYYVLDDPEVSDAEFDALMRELEQLEADHPDLV---TPDSPTQRV 76

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFTLEP 132
           GG        V H +P LSL   +  +++R F  R+     K      + + ++ +  EP
Sbjct: 77  GGAPAAGFDTVRHRLPMLSLANGFESDEIRDFDRRVRERLAKQTGDPARAEQAVAYMAEP 136

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVR 188
           K+DG  I++ YE G+ V AA RGDG +GEDV+  +R +  IP  L    + + P ++EVR
Sbjct: 137 KLDGLAISLIYENGRLVQAATRGDGETGEDVTGNVRTVRPIPLHLGDRYTDDAPGVLEVR 196

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT- 246
           GEV++ ++DF  LN  + A G++ + NPRNAA+G LR+L+P     R L+FF + +G   
Sbjct: 197 GEVFMRRSDFERLNQGLEADGQRGFMNPRNAAAGSLRQLDPKVTARRPLSFFAYSVGHVE 256

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  Q   L  +  LGFPV       +   G ++YY  +   R  L Y+IDG+VYKV
Sbjct: 257 GGTLPDTQSGTLDWLHRLGFPVCPERAVLDGVEGCLAYYERLAERRRELDYEIDGIVYKV 316

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D  + Q+QLG  +R+PRW I+HKF  ++ +T L  +D ++GRTG LTPVARLEPV +GG 
Sbjct: 317 DSLADQQQLGFVSRAPRWAIAHKFPAEEQTTTLRAVDFRVGRTGALTPVARLEPVLVGGV 376

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I             +DIR+GDRV+V+RAG+VIP+VV     ER  D +
Sbjct: 377 TVSNATLHNMDEI-----------ARKDIRIGDRVIVRRAGDVIPEVVGRAGGERPADTR 425

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP C S + R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +IEG 
Sbjct: 426 AIEMPTRCPECDSHIER----PEGEAVA--RCTGGLVCPAQRREALKHFVSRRAMDIEGF 479

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++           ++ PAD+F L       T ++E +   G     NL +++ + R
Sbjct: 480 GEKLIEQLAD----GGIVQSPADLFAL------DTERLEALERVGPKLAENLVNALEQAR 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFIF+LGIR VG   AR+LA YY       Q           D  +L  VP VG 
Sbjct: 530 ETTLARFIFALGIREVGEVTARNLATYYGDLDTLMQA----------DAEALQEVPDVGP 579

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS------PSIGRHEKNVSSEIENKKLVFTGTLQK 660
           I+A+ I  F+  P N+  + A L+E        P+    EK  ++ +     V TG+   
Sbjct: 580 IVAEHIANFFAEPHNLEVIRA-LREAGVHWPDPPARPAAEKGETAPLAGNTYVLTGSFDT 638

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R +A+  +   GA V+  +S+KT  +I G +PGSK+ KA+ L + I+  +    LL
Sbjct: 639 MTREEAKAALEARGAKVTGSVSKKTTAVIAGTDPGSKVTKAESLDIPILGPDDLAQLL 696


>gi|320157090|ref|YP_004189469.1| DNA ligase [Vibrio vulnificus MO6-24/O]
 gi|319932402|gb|ADV87266.1| DNA ligase [Vibrio vulnificus MO6-24/O]
          Length = 669

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/709 (35%), Positives = 398/709 (56%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  ++ L  L+Q++ YH   YY    P I D+EYD + R   AI    P+    + P+  
Sbjct: 3   ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG    S  +VTH IP LSL+  ++ E+L  F+ R          ++  F  EPK+
Sbjct: 61  -QRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDA--FCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I ++P ++     P  IEVRGEV++
Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251
            K  F  LND     G K + NPRNAA+G LR+L+     TR L F+ + +G    I  +
Sbjct: 178 PKAGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y+   +++  G P+    +  N    + ++Y ++ + R  LPY+IDG+V K+D+  +
Sbjct: 238 SSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIVI 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QEKLGFVARAPRWAIAYKFPAQEELTMLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + VGD V+++RAG+VIP++V ++ + R  D +   FP
Sbjct: 358 TLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKDRRKGDEKNIIFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 TACPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+FTL     T   ++      G  S  N+ +++N  +  +L 
Sbjct: 461 EQLVDKE----MVETPADLFTLSAGVLTVLERM------GPKSAQNIVNALNVAKETTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ + +      +            LI VP +G+++A+ 
Sbjct: 511 RFLYSLGIREVGEATAANLARHFKTLEAIQTATHE----------QLIEVPDIGEVVARH 560

Query: 612 IVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   V+AL+++  V P++      +   +  K +V TGTL ++ R  A+  
Sbjct: 561 ITAFFAEEKNQRVVQALIEQGIVWPAVEELGSEIPQPLAGKVVVLTGTLTQLSRGDAKAA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +LGA V+  +S+KTDI+  G+  GSKL KAQ+LGV+I  E+  L LL
Sbjct: 621 LERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669


>gi|297538570|ref|YP_003674339.1| DNA ligase, NAD-dependent [Methylotenera sp. 301]
 gi|297257917|gb|ADI29762.1| DNA ligase, NAD-dependent [Methylotenera sp. 301]
          Length = 682

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 258/699 (36%), Positives = 392/699 (56%), Gaps = 47/699 (6%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L Q I+ +D  YY    P + DSEYD + R    I    P+L     P+ P  ++ G   
Sbjct: 26  LRQLIAQYDHEYYVLDAPSVPDSEYDLVYRDLQDIERQHPNLIT---PDSPTQRVSGSAA 82

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
            +   +TH    LSL   +   +L  F  R+     ++    + + +EPK DG  IT+ Y
Sbjct: 83  NAFNSITHRQAMLSLNNAFEDSELEAFDKRVREALGQE---QVEYAVEPKFDGLAITLTY 139

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALN 202
           E G F   A RGDG++GEDV+  +R + +IP  L+  N P+++EVRGEV + K DF  LN
Sbjct: 140 ENGIFTQGATRGDGYTGEDVTHNLRTVRSIPMRLNCENAPKLLEVRGEVLMFKRDFEKLN 199

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM-LQK 260
              +A G K +ANPRNAA+G LR+L+     TR L+FF +GLG      A G + M +  
Sbjct: 200 QAQLAKGEKLFANPRNAAAGSLRQLDAKITATRPLSFFAYGLGVADGAPALGSHSMAMDY 259

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +  L FPV+   +      G+  YY ++  +R+ LP+DIDG+VYKV++F+ Q +LG  +R
Sbjct: 260 LANLYFPVSEVRQLVMGVTGLRDYYQKIGQLRNELPFDIDGVVYKVNQFNQQNELGFVSR 319

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I+HKF  ++A T + DI++Q+GRTG +TPVARL PV +GG  +TNATLHNED ++
Sbjct: 320 APRWAIAHKFPAQEALTVVEDINVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEVR 379

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                       +D+ +GD V V+RAG+VIP+VV +++  R  DA+ F  P+ CP C S 
Sbjct: 380 -----------RKDVHIGDTVSVRRAGDVIPEVVSVVLERRLADARRFEMPTACPECGSH 428

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +++  +       A  RCTGGL C AQ+ + + HF SR A +IEGLG++ +D   +    
Sbjct: 429 ILKQADE------AVARCTGGLFCPAQRKQAITHFASRRAMDIEGLGEKLVDQLVE---- 478

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
           A  +   ADI+      Q +   + N+      S  N+ D+++  +  +L RFI++LG+R
Sbjct: 479 ANLVHTLADIY------QLNLETLSNLDRMATKSAQNILDALDHSKITTLARFIYALGMR 532

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           +VG   A+ LAK++           N+ A    D  SL+ V  VG ++A++I  F     
Sbjct: 533 NVGEATAKDLAKHF----------GNLSALMQADAASLLTVNDVGPVVAESISNFLGEQH 582

Query: 621 NICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           N   + AL    +S      ++  +  +  K  V TGTL  + R  A+E +  +G  VS 
Sbjct: 583 NQDVIRALQHAGISWPETEGKQLATGHLLGKSFVLTGTLPTLSRDAAKEMIEAVGGKVSG 642

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +S+KTD ++ G + GSKL+KAQ+LG+ I++E   L LL
Sbjct: 643 SVSKKTDFVVAGSDAGSKLDKAQELGLVILDEAGLLALL 681


>gi|23098215|ref|NP_691681.1| NAD-dependent DNA ligase LigA [Oceanobacillus iheyensis HTE831]
 gi|81741485|sp|Q8CXK6|DNLJ_OCEIH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|22776440|dbj|BAC12716.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Oceanobacillus
           iheyensis HTE831]
          Length = 667

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/709 (36%), Positives = 403/709 (56%), Gaps = 54/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQ  K++ SL + ++ +   YY    P + D+EYD   R    +   FPDL      
Sbjct: 1   MNKEQVSKKIESLIELLNQYGYEYYVLDNPTVPDAEYDQKLRELQQLEQDFPDLVME--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG    S  KVTH++P LSL   +N +DLR F  R         D  I F  E
Sbjct: 58  NSPTQRVGGAPLASFQKVTHNVPMLSLGNAFNEQDLRDFARRA----SNGTDQPISFVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE GKFV  A RGDG  GED+++ ++ I +IP  LS+     +EVRGE 
Sbjct: 114 LKIDGLAISLTYENGKFVRGATRGDGTIGEDITSNLKTIRSIP--LSIKEQGTLEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+    FLALN+       +P+ANPRNAA+G LR+L+P     R L+ F++G+G+     
Sbjct: 172 YMPHKSFLALNELREKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGEWENSD 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L +++ LGF  N   ++ NT   ++ Y N     R+ L Y+IDG+V KVD   
Sbjct: 232 LTSHSEHLTRLKELGFKTNKEWKKCNTIDEVIEYVNYWTEHRNDLSYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++A T L DI++ IGRTG++TP A L+PV + G  +  
Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEAMTTLRDIELSIGRTGVVTPTAILDPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD+V++K+AG++IPKVV  +V +R+ D Q F  
Sbjct: 352 ASLHNEDLIR-----------EQDIRIGDKVVIKKAGDIIPKVVRSVVEQRNGDEQEFHM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C + +VR L  +      A RC     C AQ +E L HFVSR+A NI+GLG++ 
Sbjct: 401 PDECPACGNELVR-LEEEV-----ALRCINP-NCPAQLMEGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       ++  AD++ L + +     ++      G+ SVTNL ++I K +  SL
Sbjct: 454 IIQLFQEN----LVQTMADLYRLDKEELLQLERM------GEKSVTNLLEAIEKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA  + + +N  +            +  ++ +  +GD +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMEFETMENLQKAT----------YEDVLAIDEIGDKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +IV+++   + +  + + L+E+   +      + E+   S +  K +V TG ++K  R +
Sbjct: 554 SIVQYFAEEK-VTELLSNLRELGVQMEYKGPRKSEQATDSVLSGKTVVLTGKMEKFSRKE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           A+E +  LG  V+  +S+KTDI+I G++ GSKL+KA++LG+ + +E+Q 
Sbjct: 613 AKEIIESLGGTVTGSVSKKTDIVIAGEDAGSKLDKAEKLGIDVWSEQQL 661


>gi|238765534|ref|ZP_04626449.1| DNA ligase [Yersinia kristensenii ATCC 33638]
 gi|238696249|gb|EEP89051.1| DNA ligase [Yersinia kristensenii ATCC 33638]
          Length = 670

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 255/711 (35%), Positives = 412/711 (57%), Gaps = 49/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  ++ P  
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITNDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ E    F  R++   + K    + F  E K
Sbjct: 60  --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKSAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 MPQAGFEQLNDEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +   + L + +  G PV+N V+       ++++Y +++  R+ L +DIDG+V KVD  
Sbjct: 236 -PRSHIQRLMQFKHWGLPVSNRVKLCTGSEQVITFYRQVEQDRAGLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 DLQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  DA+  +
Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEIT 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A ++EG+G +
Sbjct: 404 FPEHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVEGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   + +     +  PAD+FTL      +  K+  +   G  S  NL  ++ K +  +
Sbjct: 458 IIEQLVEKQ----YVENPADLFTL------TAGKLTGLDRMGPKSAQNLIAALEKAKQTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+I+A
Sbjct: 508 FARFLYALGIREVGEATAANLAAHFRNLTNL----------RAADIEALKSVPDVGEIVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           + ++ F     N   +EAL K +S    +    + + S    K +V TG+L  + R +A+
Sbjct: 558 KHVLNFLGEEHNQKVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 618 DRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668


>gi|91762853|ref|ZP_01264818.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718655|gb|EAS85305.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 676

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 260/697 (37%), Positives = 406/697 (58%), Gaps = 49/697 (7%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           H+  YY  +KPI+ D E+D LK+    +   +  L +SE    P   IG + + +  K+ 
Sbjct: 20  HNKHYYDKNKPIVSDQEFDLLKKDIIDLESKYKFL-KSE--YSPTKSIGFKPSKNFQKIK 76

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H +P LSL   +N EDL+ F  +I  F   KD N+I ++ EPKIDG   ++ Y  GK   
Sbjct: 77  HKVPMLSLGNAFNEEDLKNFEKKIINFLSLKDVNTIEYSAEPKIDGISASLIYINGKLTK 136

Query: 151 AALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
              RGDG+ GED++  ++ I  IP  +   N P+ I++RGEV+I  NDF  + D+     
Sbjct: 137 GLSRGDGNEGEDITQNLKTIKDIPLEITKSNFPKEIDIRGEVFIENNDFKKIKDK----- 191

Query: 210 RKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
              +ANPRNAASG LR+ N     +  L F  +  G   ++  K Q   L+ ++  GF  
Sbjct: 192 ---FANPRNAASGSLRQKNSLITEKIPLKFIAYTYGYEKKMNIKNQTSFLENLKLWGFKT 248

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
           N   ++      ++  + E++  R  L +DIDG+VYKV++F LQK+LG  A +PRW I+H
Sbjct: 249 NPFNKKIIGVKNLMLNHKELEEKRKELAFDIDGIVYKVNDFDLQKRLGFAANAPRWAIAH 308

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           KF+   + + +++I+IQIGRTG LTPVA+++PVNIGG +++NATLHNED         ++
Sbjct: 309 KFSANSSISEIMNIEIQIGRTGALTPVAKIKPVNIGGVIVSNATLHNED---------EI 359

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
           +R  +DIRVGD V V+RAG+VIP VV + + +R  +++ F FP  CP C S+ ++D N  
Sbjct: 360 VR--KDIRVGDTVTVERAGDVIPHVVSVDLKKRKQNSKKFIFPLKCPSCGSKTIKDYNET 417

Query: 449 TGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
           T +  A  RC   G  C    +ER+KHFVS+DAFNI+G GK+ ++ F+  +     +R+P
Sbjct: 418 TKRQDAVRRCASEGFECEKIAIERIKHFVSKDAFNIDGFGKKIVENFWNLK----LVRLP 473

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
            DIF L      +  KIE + G+G +SV NL  SI K++NISLERFI+SLGIRH+G E A
Sbjct: 474 QDIFKL------NYNKIEELEGWGKLSVANLRFSIEKKKNISLERFIYSLGIRHIGQENA 527

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + +A++  +  NF +    +   NN +  SL  +  +G    Q+I +F+ N  N+     
Sbjct: 528 KLIARHLKTASNFFR----LSGENNIE--SLSNIDGIGITQIQSIKKFFLNKTNL----K 577

Query: 628 LLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           +L E+  ++   +    N +  ++NK  + TG L  I R +A+  + Q    + + +++K
Sbjct: 578 VLSELEKNLLIKDVILINNNGLLKNKTFMLTGKLNGISRAEAKSLIEQNSGKIISNVNKK 637

Query: 685 TDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            D +I GD P   K+  A++  +KI+N+ ++L +L +
Sbjct: 638 LDYLIAGDKPTLKKINTAKEWNIKIINQTEWLKMLNK 674


>gi|254785950|ref|YP_003073379.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
 gi|237685872|gb|ACR13136.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
          Length = 676

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 261/715 (36%), Positives = 402/715 (56%), Gaps = 55/715 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   +  + L Q +++H+  YY   +P I D+EYD L      +   FP L   E  + P
Sbjct: 9   EAVMRRCNELHQLLNHHNRQYYLLDEPEIPDAEYDRLFHELKTLEAEFPQL---ETADSP 65

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G E       V H +P LSL+  ++ ED+R F  RI    +   D  + +  EPK 
Sbjct: 66  TQRVGAEPLKGFSSVQHEVPMLSLDNAFSDEDMRAFEKRIQD--RLASDAELEYACEPKF 123

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  +++ Y  G+    A RGDG +GED++  +R I ++P  LS  N+P + EVRGEV +
Sbjct: 124 DGIAVSLLYRDGRLQRGATRGDGATGEDITQNVRTIGSVPLKLSGDNVPAVFEVRGEVVM 183

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F  LN      G + + NPRNAA+G LR+L+P+    R L FF + +G        
Sbjct: 184 PRAGFAKLNAAAQERGDRLFVNPRNAAAGALRQLDPSITAKRPLVFFAYSVGYVEGELPP 243

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +  L  +  LGF V      A+   G ++YY ++   R+ L YDIDG+V+KV+++ LQ
Sbjct: 244 THFGTLDLLEKLGFVVAGERALAHGAGGCLAYYRDLGEKRADLGYDIDGIVFKVNDYGLQ 303

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I+HKF  ++  T L D++ Q+GRTG +TPVARLEPV +GG  ++NAT
Sbjct: 304 NRLGFVSRAPRWAIAHKFPAQEEMTVLNDVEFQVGRTGAVTPVARLEPVFVGGVTVSNAT 363

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L            +++GD+V+V+RAG+VIP++V ++++ R   A+   FP+
Sbjct: 364 LHNRDEIERL-----------GVKIGDQVVVRRAGDVIPQIVSVVLSARPQHAKEIVFPA 412

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S+V        G+ VA  RCTGGL C+AQ+ E +KHFVSR A +IEGLG + ++
Sbjct: 413 NCPVCGSQV----EVLEGEAVA--RCTGGLVCAAQRKEAIKHFVSRTAMDIEGLGDKLVE 466

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      I   ADI+ L+         + N+   GD S  N+ D+I K ++ +L R
Sbjct: 467 QLVG----LGHIEHIADIYRLEHE------VLANMERMGDKSAQNVIDAIEKSKSTTLPR 516

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+F+LGIR VG   AR++A+++   +N            + D  +L+ V  VG I+A  I
Sbjct: 517 FLFALGIREVGQATARNIAQHFGMLKNLM----------DADQEALVAVDDVGPIVAHHI 566

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSE---IENKKLVFTGTLQKIQRHKA 666
            +F+Q   N   + ALL+E     G H      V++E   ++ K  V TGTL+ + R +A
Sbjct: 567 FDFFQQQGNRAQI-ALLQEA----GVHWPESAPVAAESLPLDGKTYVLTGTLETLSRDEA 621

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +E +  LGA V+  +S+KTD ++ G   GSKL KA+ LG+++++E  F+ LL  +
Sbjct: 622 KEKLLALGAKVTGSVSKKTDCVVAGPGAGSKLAKAESLGIEVLDEAAFVALLDSF 676


>gi|254252054|ref|ZP_04945372.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
 gi|124894663|gb|EAY68543.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
          Length = 691

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 260/708 (36%), Positives = 394/708 (55%), Gaps = 52/708 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L      +    P+L     P+ P  ++GG + 
Sbjct: 20  LRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQLEADHPELVT---PDSPTQRVGGAVA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  +D+  F  R+     K  D      + + +  E K DG 
Sbjct: 77  SGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALAKTTDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE G FV AA RGDG +GEDV+  +R I +IP ++    +P +++VRGEV + K 
Sbjct: 137 AISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGRTVPAVLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254
           DF  LN+   A G++ +ANPRNAA+G LR+L+P     R L+FF +G+G    +      
Sbjct: 197 DFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L     LG PVN      +   G+++++  +   R  LPYDIDG+VYKV+    Q +
Sbjct: 257 SALLDWYEALGLPVNRERAVVHGADGLLAFFRRVGEKRDALPYDIDGVVYKVNRRDEQDR 316

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH
Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 376

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  P+ C
Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTEC 425

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D  
Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLVCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +R PAD+F L        + +  +  F + S  NL DS+ K ++ +L RFI
Sbjct: 480 VELN----LVRTPADLFNL------GFSTLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIRHVG   A+ LAK++ S       +  I+  + D+   L+ V  VG I+A++I +
Sbjct: 530 YGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIDE---LLEVNDVGPIVAESIHQ 579

Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           F+    N   +E L    K   P      K     +  K +V TGTL  + R  A+E + 
Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGTLPNLTRDAAKEMLE 639

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GA V+  +S+KTD +I G   GSKL KA++LG+ +++E+    LL+
Sbjct: 640 AAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|87119444|ref|ZP_01075341.1| NAD-dependent DNA ligase [Marinomonas sp. MED121]
 gi|86164920|gb|EAQ66188.1| NAD-dependent DNA ligase [Marinomonas sp. MED121]
          Length = 676

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 267/715 (37%), Positives = 409/715 (57%), Gaps = 60/715 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++S L   ++ +   Y+   +P + D+EYD   R   A+    PDL +++ P     ++G
Sbjct: 8   QISELVNRLNDYSYAYHVKDEPKVSDAEYDLDYRTLIALEKQAPDLIQADSPT---QRVG 64

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            + +     V H++P LSL+  ++ E L +F  R+++    +   ++ +  EPK+DG  I
Sbjct: 65  EKPDSGFQTVAHTVPMLSLDNAFSDEQLEEFEQRLFKLIGAQ---ALSYCCEPKLDGLAI 121

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           ++RYE G  V    RGDG +GED+++ I+ I +IP ++ +   P ++EVRGE+Y+ K  F
Sbjct: 122 SLRYEDGILVRGLTRGDGVAGEDITSNIKTIGSIPLKLRTQTPPPVLEVRGEIYMPKAGF 181

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYE 256
            ALN +    G K + NPRNAA+G LR+L+P+   +R L    + +G T   I     Y+
Sbjct: 182 EALNKQAEEKGEKAFVNPRNAAAGSLRQLDPSITASRPLVLCAYSIGHTEGWIQPDSHYD 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  M   GF  N  + + ++  G V YY  +  +R  L YDIDG+VYKVD  +LQ++LG
Sbjct: 242 SLTLMSQWGFKTNPLMEKVSSIKGCVDYYQRLTELRPDLTYDIDGIVYKVDSLALQQELG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW I+ KF  ++A T++LD+D Q+GRTG +TPVARL+PV +GG  ++NATLHN+
Sbjct: 302 FIARAPRWAIARKFPAEEAITQILDVDFQVGRTGAITPVARLDPVFVGGVTVSNATLHNK 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L            +RV D V ++RAG+VIP+VV +I ++R  D+    FP  CPI
Sbjct: 362 DEINRL-----------GVRVKDFVSIRRAGDVIPQVVKVIHDKRGEDSAEVIFPEVCPI 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG----KQQLD 492
           CQS    +L   TG+ V   RC+GGL C AQ+ E LKHFVSR A +I+GLG    +Q +D
Sbjct: 411 CQS----ELEQVTGEAVI--RCSGGLVCGAQRKEALKHFVSRKAMDIDGLGDKLVEQLVD 464

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F        I+ P DI+ L +++Q +  ++E +   G+ SV  L  SI   +     R
Sbjct: 465 LEF--------IKTPVDIYHLFKKKQ-ALLELERM---GEKSVEKLLTSIEASKQTEFHR 512

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGIR VG   AR+L +++       + ++ II  N +   SL++V  VG I+AQ +
Sbjct: 513 FIYALGIREVGEATARTLTRHF-------KTLDKIIEANTE---SLVKVDDVGPIVAQHL 562

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQ 667
             F+    N   V ALL      +   EK  +S    + L     V TGTL  ++R + +
Sbjct: 563 RRFFFKDSNKEMVMALL---DAGLYWQEKEAASGETAQPLLGLTYVVTGTLTALKRDEVK 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + +  LGA VS  +S KT  +I G+  GSKL KAQ LG++I++E   L LL+++ 
Sbjct: 620 DKLISLGAKVSGSVSAKTHCLIAGEKAGSKLTKAQDLGIQILDEAGMLALLEEHG 674


>gi|27363688|ref|NP_759216.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus CMCP6]
 gi|81449211|sp|Q8DFK5|DNLJ_VIBVU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|27359804|gb|AAO08743.1| DNA ligase, NAD-dependent [Vibrio vulnificus CMCP6]
          Length = 669

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/709 (35%), Positives = 398/709 (56%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  ++ L  L+Q++ YH   YY    P I D+EYD + R   AI    P+    + P+  
Sbjct: 3   ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG    S  +VTH IP LSL+  ++ E+L  F+ R          ++  F  EPK+
Sbjct: 61  -QRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDA--FCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I ++P ++     P  IEVRGEV++
Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251
            K  F  LND     G K + NPRNAA+G LR+L+     TR L F+ + +G    I  +
Sbjct: 178 PKAGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y+   +++  G P+    +  N    + ++Y ++ + R  LPY+IDG+V K+D+  +
Sbjct: 238 SSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIVI 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QEKLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + VGD V+++RAG+VIP++V ++ + R  D +   FP
Sbjct: 358 TLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKDRRKGDEKNIIFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 TACPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+FTL     T   ++      G  S  N+ +++N  +  +L 
Sbjct: 461 EQLVDKE----MVETPADLFTLSAGVLTVLERM------GPKSAQNIVNALNVAKETTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ + +      +            LI VP +G+++A+ 
Sbjct: 511 RFLYSLGIREVGEATAANLARHFKTLEAIQTATHE----------QLIEVPDIGEVVARH 560

Query: 612 IVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   V+AL+++  V P++      +   +  K +V TGTL ++ R  A+  
Sbjct: 561 ITAFFAEEKNQRVVQALIEQGIVWPAVEELGSEIPQPLAGKVVVLTGTLTQLSRGDAKAA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +LGA V+  +S+KTDI+  G+  GSKL KAQ+LGV+I  E+  L LL
Sbjct: 621 LERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669


>gi|260892973|ref|YP_003239070.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4]
 gi|260865114|gb|ACX52220.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4]
          Length = 672

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 259/708 (36%), Positives = 388/708 (54%), Gaps = 45/708 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS E+A++ +  L +EI+YHD  YY    P+I D+EYD L     A+  AFP+      P
Sbjct: 5   LSKEEAKRRIEELRREIAYHDYRYYVLDSPVISDAEYDRLVLELMALEEAFPEFI---TP 61

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG        V H +P LSL   +  EDLR F  R+    +      + + +E
Sbjct: 62  NSPTQRVGGAPREGFPTVRHLVPMLSLANAFEPEDLRDFDRRVR---EALPGEKVEYVVE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ Y  G+FV  A RGDG  GEDV+  +R I +IP     + P +IEVRGE 
Sbjct: 119 PKIDGLAVSLLYRDGEFVQGATRGDGEVGEDVTPNLRTIRSIPLRFLKDAPPLIEVRGEA 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           ++ K  F+ LN+     G  P+ANPRNAA+G +R+L+P     R L+FF +G+G    I 
Sbjct: 179 FMPKEAFVKLNERREEAGEPPFANPRNAAAGSIRQLDPRVTAGRKLDFFAYGIGHYEGIS 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E+L  +   GF VN   R  ++   ++ Y    +S R  LPY IDG+V KV+   
Sbjct: 239 FSTHWEVLDWLAEQGFRVNEHRRLFSSIDEVIDYVLSWQSKRFDLPYVIDGMVVKVNSLE 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG   +SPRW ++ KF  ++A T+L  I+I +GRTG+LTPVA  +PV I G  ++ 
Sbjct: 299 SQARLGATMKSPRWAVAFKFPPEEAVTKLRRIEISVGRTGVLTPVAVFDPVQIAGTTVSR 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED I+            +DIRVGD ++V +AG+VIP+VV  +   R  + Q F  
Sbjct: 359 ATLHNEDLIR-----------EKDIRVGDYIVVHKAGDVIPEVVRSLPERRTGNEQIFRM 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C ++ +R+     G++  A RC   ++C A+  E + HF SR+A +I GLGK  
Sbjct: 408 PDHCPACGAKTIRE----EGEV--AVRCP-NISCPARLKESIFHFASRNAMDIRGLGKVL 460

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++      D    ++  ADI+ L+R       ++      G  S  NL   I + ++  L
Sbjct: 461 VEQLV---DRGL-VKNVADIYFLRREDLLRLERM------GPKSTANLLREIEESKSRGL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R IF LGIRHVG   A+ LA+++ S    AQ               L  +P +G  IA 
Sbjct: 511 NRLIFGLGIRHVGERAAKLLAEHFGSIDRLAQATEE----------ELTEIPEIGPKIAA 560

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  F+  PRN+  +E L +         E      ++ K  VFTG L+   R +A+  +
Sbjct: 561 SVRAFFAEPRNLEVIERLREAGVRLETTKEVREEGPLKGKVFVFTGALKSFTREEAKALI 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +LG  V++ +SR+TD ++VG+NPGSK ++A++LG+K++NEE+F  LL
Sbjct: 621 ERLGGRVASSVSRRTDYVVVGENPGSKYDRARELGIKMLNEEEFKRLL 668


>gi|238752012|ref|ZP_04613496.1| DNA ligase [Yersinia rohdei ATCC 43380]
 gi|238709712|gb|EEQ01946.1| DNA ligase [Yersinia rohdei ATCC 43380]
          Length = 670

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/711 (35%), Positives = 415/711 (58%), Gaps = 49/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L+  + +H+  YY    P I D+EYD + ++   +    P+L  ++ P  
Sbjct: 1   MESIIQQINQLKTSLRHHEHQYYVLDAPEIPDAEYDRMMQQLRELEAQHPELITNDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GG    +  +V H +P LSL+ +++ E    F  R++   + K    + F  E K
Sbjct: 60  --QRVGGAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++  +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV++ V+       ++++Y +++  R+ L +DIDG+V KVD  +
Sbjct: 236 PRSHIQRLMQFKDWGLPVSDRVKLCTGSDQVIAFYRQVEQDRAELGFDIDGVVIKVDSLN 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R PDA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPPDAKEILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PDHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL      +  K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTL------TAGKLTGLDRMGPKSAQNLIVALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            RF+++LGIR VG   A +LA ++ +  N  A +I+           +L  VP VG+++A
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLANLRAADID-----------ALKSVPDVGEVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVS-PSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           + ++ F     N   +EAL + ++ P   R   + + S    K +V TG+L  + R +A+
Sbjct: 558 KHVLNFLNEEHNQKVIEALEQVITWPEPQRIITEEIDSPFAGKTVVLTGSLTVLSRDEAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+K+++E + + LL
Sbjct: 618 DRLTALGAKVSGSVSKKTDLVIAGEAAGSKLIKAQELGIKVIDEAEMILLL 668


>gi|293603951|ref|ZP_06686365.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
 gi|292817644|gb|EFF76711.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
          Length = 700

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 266/726 (36%), Positives = 403/726 (55%), Gaps = 72/726 (9%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L  E+  H+  YY Y +P I D+EYD L R+ +A+    P+L     P  P  ++G  
Sbjct: 15  AHLRAELEQHNVRYYVYDEPSISDAEYDGLMRQLEALEAEHPELI---TPESPTQRVGAA 71

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-----DNSIFFTLEPKIDG 136
              +   V+H++P LSL   +  E++  F  R+    +          + +F  E K+DG
Sbjct: 72  PVSAFGSVSHAVPMLSLNNAFAEEEVVAFDRRVTDTLRGAGLLGPAQQADYFC-ELKLDG 130

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++RYE G+ V AA RGDG +GEDV++ IR I  IP  L    P+++EVRGEV +++ 
Sbjct: 131 LAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGAAPKVLEVRGEVLMNRA 190

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG----------- 244
           DF  LN+       K + NPRNAA+G LR+L+P     R L FF +G G           
Sbjct: 191 DFEKLNEAQARRDEKIFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLPGKQSG 250

Query: 245 ----------KTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRS 293
                     + S++  K    ML  +  LG PVN     +A    G++++Y ++  +R+
Sbjct: 251 LFDEATAGAGQASQLPEKSHGAMLAWLHELGLPVNLKHNDRATGAEGLMAFYAKVGELRA 310

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
           +LPYDIDG+VYKVD    QK LG  AR+PR+ ++HKFA ++A+T LLDI++Q+GRTG +T
Sbjct: 311 SLPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGAIT 370

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVARL+PV +GG  +TNATLHNED I+            +D+R GD V+V+RAG+VIP+V
Sbjct: 371 PVARLKPVFVGGVTVTNATLHNEDEIR-----------RKDVRKGDTVIVRRAGDVIPEV 419

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           +  ++ +R  DAQ F  P+ CP+C S + R L  +T       RCTGGL C+AQ+ + L 
Sbjct: 420 LGPVLEKRPDDAQQFVMPTACPVCGSAIER-LEDET-----IARCTGGLFCAAQRKQTLW 473

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
           H  SR A +IEGLG++ +D    S      ++  AD+++L+  +     ++      G  
Sbjct: 474 HAASRKALDIEGLGEKLVDQLVDS----GRVKTLADLYSLRPLELVGLDRM------GQK 523

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           S  NL  +I+K R  +L R +F+LGIRHVG   AR +A+++           +I A  + 
Sbjct: 524 SADNLVAAIDKARAPALNRLLFALGIRHVGETTARDVARHF----------GSIDAIMDA 573

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKL 652
           D  +L  VP VG ++A +I  F+    N   +E L  + V+P      +  +  +  K  
Sbjct: 574 DEEALSSVPDVGPVVAASIRRFFAEQHNRDVIEQLKAQGVNPVAEAAPQGTT--LAGKTF 631

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL    R +A  ++   G  V+  +S+KT  ++ G+  GSKL KAQ+LGV +++E+
Sbjct: 632 VLTGTLPNWTREEASMHIQAAGGKVTGSVSKKTAYLVAGEEAGSKLTKAQELGVTVLDED 691

Query: 713 QFLFLL 718
               LL
Sbjct: 692 ALKALL 697


>gi|307729327|ref|YP_003906551.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
 gi|307583862|gb|ADN57260.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
          Length = 688

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 264/706 (37%), Positives = 392/706 (55%), Gaps = 51/706 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+   +  YY   +P + D+EYD L +  ++I    PDL     P+ P  ++GGE  
Sbjct: 21  LRTELERANYAYYVLDQPDLPDAEYDRLFKELESIEAEHPDLIV---PDSPTQRVGGEAA 77

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW---QKKDDNSIFFTLEPKIDGTMIT 140
                V H  P LSL   +  ED+  F  R+        K+    + +  E K DG  I+
Sbjct: 78  SGFEPVVHDQPMLSLNNGFADEDIIAFDKRVGDALGNNAKEPPVPVDYATELKFDGLAIS 137

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           +RY  G FV AA RGDG +GE+V+  IR + +IP R+    +P I++VRGEV + K DF 
Sbjct: 138 LRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLRLKGKRVPHILDVRGEVLMFKRDFE 197

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY-E 256
            LN+   A G K +ANPRNAA+G LR+L+ + IT  R L+FF +G+G    +     + E
Sbjct: 198 RLNERQRAAGHKEFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMEMPATHSE 256

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L   + LG PVN          G+++++  +   R  LPYDIDG+VYKV+    Q+ LG
Sbjct: 257 LLDWYKELGLPVNAERAVVKGAEGLLAFFRAVGEKRDKLPYDIDGVVYKVNRRDEQEALG 316

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLHNE
Sbjct: 317 FVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNE 376

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA+ F  P+ CP+
Sbjct: 377 DEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSALLDRRPADAREFVMPTHCPV 425

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S + R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D   +
Sbjct: 426 CGSNIERLPDE------AIARCTGGLICPAQRKQALWHFAQRRAMDIDGLGEKIIDQLVE 479

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +R PAD+F L          +  +  F D S  NL DS+ K ++ +L RFI++
Sbjct: 480 QN----LVRTPADLFNL------GFATLAELDRFADKSAQNLLDSLEKAKHTTLARFIYA 529

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG   A+ LAK++ S           +   ND          VG ++A++I +F+
Sbjct: 530 LGIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVND----------VGPVVAESIHQFF 579

Query: 617 QNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
               N   +E L    K   P      K     +  K +V TGTL  + R  A+E +   
Sbjct: 580 AEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGTLPTLSREDAKEMLEAA 639

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 640 GAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKLLE 685


>gi|238799224|ref|ZP_04642672.1| DNA ligase [Yersinia mollaretii ATCC 43969]
 gi|238716921|gb|EEQ08789.1| DNA ligase [Yersinia mollaretii ATCC 43969]
          Length = 670

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/705 (36%), Positives = 414/705 (58%), Gaps = 47/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  S+ P     ++
Sbjct: 6   QQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITSDSPT---QRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G     +  +V H +P LSL+ +++ E    F  R++   ++ +   + F  E K+DG  
Sbjct: 63  GAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAE--PLTFCCELKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE+G+ V AA RGDG +GE+++A +R I  IP R+   NIP  +EVRGEV++ +  
Sbjct: 121 VSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVFMPQAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIFAKGQY 255
           F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G        +   
Sbjct: 181 FEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGELPRSHI 240

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L + +  G PV++ V+       ++++Y +++  R++L +DIDG+V KVD+  LQ+QL
Sbjct: 241 QRLMQFKAWGLPVSHRVKLCTGSEQVIAFYRQVEQDRASLGFDIDGVVIKVDDLDLQEQL 300

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++NATLHN
Sbjct: 301 GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN 360

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  DAQ   FP  CP
Sbjct: 361 ADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAQEILFPEHCP 409

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A ++EG+G + ++   
Sbjct: 410 VCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKIIEQLV 463

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + +     +  PAD+F L      +  K+  +   G  S  NL  +++K +  +  RF++
Sbjct: 464 EKQ----YVENPADLFEL------TAGKLTGLDRMGPKSAQNLIVALDKAKQTTFARFLY 513

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A +LA +   ++N A    N+ A + D   +L  VP VG+++A+ ++ F
Sbjct: 514 ALGIREVGEATAANLAAH---FRNMA----NLRAADID---ALKSVPDVGEVVAKHVLNF 563

Query: 616 YQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
                N   +EAL K +S    +    + + S    K +V TG+L  + R +A++ +T L
Sbjct: 564 LSEEHNQKVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKDRLTAL 623

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           GA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 624 GAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668


>gi|220935192|ref|YP_002514091.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7]
 gi|254781444|sp|B8GTL0|DNLJ_THISH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219996502|gb|ACL73104.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 675

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 263/716 (36%), Positives = 402/716 (56%), Gaps = 56/716 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+ RK ++SL  E+ YH+  YY    P I D+ YDAL R    +   +P+L     P+ P
Sbjct: 6   EKVRKRVASLRDELDYHNHRYYVLDDPEIPDAAYDALMRELQDLEAKYPELV---TPDSP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG    +  +  H +P LSL+  +   D+  F  RI    +  +++ I F +EPK+
Sbjct: 63  TQRVGGAPLKAFEEARHLLPMLSLDNAFEEADVLAFEKRIRD--RLGEESEIEFAVEPKL 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  I++ YE G  V  A RGDG +GEDV+A +R I  IP R+     P+++EVRGEVY+
Sbjct: 121 DGLAISLLYEDGHLVRGATRGDGATGEDVTANVRTIRAIPLRLQGRGWPKLLEVRGEVYM 180

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEIF 250
            +  F A N E  + G K + NPRNAA+G LR+L+ + IT  R L FF +G G       
Sbjct: 181 DRAGFEAFNREAASRGEKVFVNPRNAAAGSLRQLD-SRITAKRPLTFFAYGAGHVEGGEL 239

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                 +L  +   G  V           G + YY  +   R  LPYDIDG+VYKV+ F 
Sbjct: 240 PDTHAAVLDALAEWGQRVCPERDVVTGAAGCLEYYRRIGERRDGLPYDIDGVVYKVNRFE 299

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  +R+PRW I+HK+  ++  T L D++ Q+GRTG LTPVARLEPV +GG  ++N
Sbjct: 300 LQQRLGFVSRAPRWAIAHKYPAQEQMTLLRDVEFQVGRTGALTPVARLEPVFVGGVTVSN 359

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D ++            +D+R+GD V+V+RAG+VIP+V  ++++ R  +A+    
Sbjct: 360 ATLHNMDEVE-----------RKDVRIGDTVIVRRAGDVIPEVAAVVLSRRPHNARHVVM 408

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S +VR      G+ VA  RC+GGL C+AQ+ E +KHF SR A +IEGLG + 
Sbjct: 409 PTHCPVCGSEIVR----SEGEAVA--RCSGGLYCAAQRREAIKHFASRRAMDIEGLGDKL 462

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++      D      +   ++ L   Q     ++      G+ S  NL D++ K ++  L
Sbjct: 463 VEQLV---DAGLVDHVDG-LYRLTAEQLAGLERM------GEKSAHNLVDALEKSKHTQL 512

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   AR+LA ++         ++ ++A + +   +L++VP VG ++A 
Sbjct: 513 ARFIFALGIREVGEATARALAIHFGG-------LDALMAADEE---ALMQVPDVGPVVAH 562

Query: 611 AIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            +  F+Q P N   ++AL       +E  P+  + E      +     V TG L+ + R 
Sbjct: 563 HVATFFQQPHNREVIDALREAGVHWEESEPAALQAE---DLPLSGNTYVLTGALESMTRE 619

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A + +  LGA VS  +S+KT  +I G+  GSKL KA++LGV +++E +FL L+ +
Sbjct: 620 EAGDRLMALGAKVSGSVSKKTTAVIAGEAAGSKLAKAEKLGVPVLSEAEFLELIGE 675


>gi|160872442|ref|ZP_02062574.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
 gi|159121241|gb|EDP46579.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
          Length = 674

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 255/696 (36%), Positives = 402/696 (57%), Gaps = 49/696 (7%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           H+  YY    P+I D+ YD L R  +AI   +P+L     P+ P  ++G     +   V 
Sbjct: 22  HNYHYYILDAPLINDATYDTLFRELEAIEKRYPELI---TPDSPTQRVGSTPLTTFKHVQ 78

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H++P LSLE  ++ +++  F  RI    Q ++  +I +  EPK+DG  +++ Y KG+ + 
Sbjct: 79  HALPMLSLENAFSEKEVLAFNKRIQERLQTQE--AIEYACEPKLDGIAVSLTYHKGQLIR 136

Query: 151 AALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
           AA RGDGH GED++  IR I +IP ++   + P  +EVRGEVYI K  F  LN+ +   G
Sbjct: 137 AATRGDGHRGEDITLNIRTILSIPLKLQGQHYPNDLEVRGEVYIPKKKFQQLNEMLKKKG 196

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTSEIFAKGQYEMLQKMRCLGF 266
            K + NPRNAA+G LR+LNP     R L FF H +G  K  ++ A     +L + +  G 
Sbjct: 197 EKMFVNPRNAAAGSLRQLNPKITAERPLAFFTHSIGIIKNGKL-ASTHTAILNQFQQWGL 255

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           P     + A      ++YY++++  R++LPY+IDG+VYKV+  +LQKQLG  +R+PRW +
Sbjct: 256 PRCPQTQLAKNITAALAYYHKIQKERASLPYEIDGVVYKVNALALQKQLGFISRAPRWAL 315

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++KF  ++AST++L I+ Q+GRTG LTPVARL+PV +GGA ++NATLHN D +K      
Sbjct: 316 AYKFPAEEASTKILSIEFQVGRTGALTPVARLQPVFVGGATLSNATLHNMDEVK------ 369

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 +DIR GD V+++RAG+VIP+VV +I  +R  + +P + P  CPIC S +++   
Sbjct: 370 -----RKDIREGDTVIIRRAGDVIPEVVQVIKKKRPANTRPLTLPKQCPICCSAIIKV-- 422

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
               +  A  RC+G L C  Q+ E +KHF SR A NIEGLG +     ++  D    I+ 
Sbjct: 423 ----ETEAIARCSGALFCPLQRKEAIKHFASRQAMNIEGLGTK---IAYQLVDTGL-IQD 474

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            ++++ L  +Q      +  +  FG+ S   L+ +I   +  +L RF++SLGIR VG   
Sbjct: 475 VSNLYHLTIKQ------LAALDHFGEKSAQKLHRAIQASKKTTLTRFLYSLGIRDVGIST 528

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A +LA+++       Q +  I+   + D   L  +P +G ++A  I +F+    N+  ++
Sbjct: 529 ALNLAQHF-------QALKPIM---DADSALLQTIPDIGPVVATHIKKFFSEQHNLDVIK 578

Query: 627 ALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
            LL      P       + +S    K +V TG+L  + R +A + + +LG  VS+ +S+ 
Sbjct: 579 NLLAAGITWPKPEFIPPSQTSPFTGKNVVLTGSLSTLSREQATQLLQKLGTKVSSSVSKN 638

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           TD +I GDNPGSKL +A  L + ++ E++FL LL++
Sbjct: 639 TDYVIAGDNPGSKLTRAHALKLTVLTEKKFLELLKE 674


>gi|225181787|ref|ZP_03735225.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1]
 gi|225167561|gb|EEG76374.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1]
          Length = 667

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 262/710 (36%), Positives = 403/710 (56%), Gaps = 55/710 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA + +  L QEI  H+  Y+   +P I D+E+D L ++ +A+   FPDL     P+ P
Sbjct: 4   QQALETVEKLRQEIDDHNYRYHVLDEPQISDAEFDDLMQKLEAMEAQFPDLV---TPDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+      ++TH +P LSL    NIEDLR F+ R  R   + +   + F +E K+
Sbjct: 61  TQRVGGKPLEGFEQITHRVPMLSLSNALNIEDLRDFVRRAIRLVPEAE---LEFVVELKV 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  ++++YE+G+FV  A RGDG  GED++  +R + +IP  L L  P  +EVRGEVY+ 
Sbjct: 118 DGLAVSLQYEEGRFVRGATRGDGEVGEDITHNLRTVQSIP--LRLRKPLTLEVRGEVYMP 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           ++ FL LN+E  A G+  +ANPRNAA+G LR+L+P     R L+   +GLG +S++    
Sbjct: 176 RSSFLKLNEERQAQGQPLFANPRNAAAGSLRQLDPKVAAERNLDMVSYGLGYSSDVTPSS 235

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+ L  ++ LG  +N  V        +VSY    +  R  LP+DIDGLV K+++ SLQ+
Sbjct: 236 HYDALMTLKELGMRINPHVVVLRELEDVVSYCESWREKRYELPFDIDGLVIKINDRSLQE 295

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  +QA TR+  I +Q+GR G LTP+A LEPV + G ++  A+L
Sbjct: 296 ELGTTAKSPRWAIAYKFPAEQAVTRVKAITVQVGRIGTLTPLAELEPVTLAGTVVKRASL 355

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED ++            +D+RVGD V+V++AG++IP+VV+++ ++R    +PF  P  
Sbjct: 356 HNEDILR-----------EKDVRVGDHVIVQKAGDIIPEVVEVVKSKRTGAEEPFEMPKH 404

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK----Q 489
           CP C S   R      G++  A RC   + C AQ +ER+ HF SR A +IEG+G     Q
Sbjct: 405 CPACGSDATR----LPGEV--ALRCFNPV-CPAQVMERITHFASRSAMDIEGMGPAVVLQ 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            LD        A  I   ADI++L  +++     + ++   G+ SV NL  +I K +   
Sbjct: 458 LLD--------AGLIADVADIYSLPDKKEA----LLSLERMGEKSVENLLAAIEKSKKQP 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R ++ LGIR VG   AR L +++ S       +  ++A + ++   L  V  VG  IA
Sbjct: 506 LWRLLYGLGIRFVGDRTARLLVEHFNS-------MEKLMAASAEE---LEAVDEVGPKIA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQE 668
           Q++ EF+  P +   +E  L+     +   E       ++ K  V TGTL    R +A E
Sbjct: 556 QSVTEFFSLPESGELIER-LRAAGLKLKEEEAEAKDLPLQGKTFVLTGTLPTYSRDEAAE 614

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +   G  V+  +S+KTD ++ G+  GSKLEKA++L V I++EE    LL
Sbjct: 615 LIEDAGGRVTGSVSKKTDYVVAGEKAGSKLEKAEKLAVTILDEEGLQSLL 664


>gi|56418811|ref|YP_146129.1| NAD-dependent DNA ligase LigA [Geobacillus kaustophilus HTA426]
 gi|81348272|sp|Q5L3B9|DNLJ_GEOKA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56378653|dbj|BAD74561.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Geobacillus
           kaustophilus HTA426]
          Length = 670

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 263/708 (37%), Positives = 401/708 (56%), Gaps = 56/708 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA +  + L + +  +   YY   +P + D+EYD L +   AI   +P+L  S+ P   
Sbjct: 4   QQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPT-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +IGG    +  KVTH +P +SL   ++  DLR F  R+     +++     +  E KI
Sbjct: 62  -QRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRV-----RQEVGEAAYVCELKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  +R I ++P  L L  P  +E RGE ++ 
Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLP--LRLKEPVSLEARGEAFMP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL    E+  + 
Sbjct: 174 KASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIES 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  ++ LGF VN   R+      ++++ NE    R  LPY+IDG+V KVD F+ Q+
Sbjct: 234 HSEALDYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQR 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  ATL
Sbjct: 294 ELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF+ P+ 
Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAMPTH 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +VR      G++  A RC     C AQ  ERL HF SR A NIEGLG++ +  
Sbjct: 403 CPECESELVR----LEGEV--ALRCLNP-NCPAQLRERLIHFASRAAMNIEGLGEKVVTQ 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F     A  +R  AD++ L + Q     ++      G+ S TNL  +I   +  SLER 
Sbjct: 456 LFN----AGLVRDVADLYRLTKEQLIGLERM------GEKSATNLLAAIEASKQNSLERL 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR+VGA+ A+ LA+++ + +   +               L+ VP +G+ +A AI 
Sbjct: 506 LFGLGIRYVGAKAAQLLAEHFETMERLERATKE----------ELMAVPEIGEKMADAIT 555

Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            F+  P     ++ L      +    P     E    S    K +V TG L  + R++A+
Sbjct: 556 AFFAQPEATELLQELRAYGVNMAYKGPKRS-AEAPADSAFAGKTVVLTGKLASMSRNEAK 614

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           E + +LG  V+  +SR TD++I G++ GSKLEKAQQLG++I +E +FL
Sbjct: 615 EEIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDESRFL 662


>gi|331005395|ref|ZP_08328777.1| DNA ligase [gamma proteobacterium IMCC1989]
 gi|330420789|gb|EGG95073.1| DNA ligase [gamma proteobacterium IMCC1989]
          Length = 707

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 267/734 (36%), Positives = 414/734 (56%), Gaps = 77/734 (10%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SI Q  ++L+ L ++I ++   YY    P I D+EYD L      +    P    S+ P 
Sbjct: 30  SITQLDQQLNELREKIHHYSYQYYALDNPTIPDAEYDRLFLELQTLEKENPSYVTSDSPT 89

Query: 73  GPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFT 129
               ++G +  LS+F +VTH +P LSL+  ++ EDLR+F  R+       D   N I + 
Sbjct: 90  ---QRVGAQ-PLSVFSQVTHRLPMLSLDNAFSAEDLREFHRRVTERLASLDITVNEIEYA 145

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188
            EPK+DG  +++ Y+KG  V  A RGDG +GED++  +R I +IP R+   N P+ +EVR
Sbjct: 146 CEPKLDGIAVSLVYQKGILVQGATRGDGKTGEDITQNVRTIASIPLRLQGDNYPDDLEVR 205

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246
           GE+Y+ K  F  LN    A   K +ANPRNAA+G LR+L+ + IT  R L    + +G  
Sbjct: 206 GEIYLPKAGFEKLNKIADAREEKRFANPRNAAAGSLRQLD-SRITAQRPLEMCAYSVG-- 262

Query: 247 SEIFAKGQY-----EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             +   GQ      ++L  +   GF +N  +           Y++++   R+ LPYDIDG
Sbjct: 263 --VVDGGQVPTKHSDILYALSAWGFRINQEMASVKGIEACCDYFDQLSKKRNALPYDIDG 320

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V+KVD   LQKQLG  +R+PRW I+ KF  ++  T LLD++ Q+GRTG +TPVARL+PV
Sbjct: 321 IVFKVDSIELQKQLGFVSRAPRWAIAQKFPAQEELTELLDVEFQVGRTGAITPVARLKPV 380

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG  ++NATLHN D ++ L            +++GDRV+++RAG+VIP++V  ++++R
Sbjct: 381 FVGGVTVSNATLHNSDEVERL-----------GVKIGDRVIIRRAGDVIPQIVSAVIDQR 429

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              A+   FPS CP+C S  VR      G+  A  RC+GGL C AQ  + +KH+VSR A 
Sbjct: 430 PDHARDIIFPSSCPVCTSPTVR----VEGE--ATIRCSGGLVCPAQIKQAIKHYVSRKAM 483

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +++GLG + ++   +       I   AD++ LQ  Q      + N+   G+ S +N+  +
Sbjct: 484 DVDGLGDKLVEQLVE----LGHITSVADLYDLQVEQ------LANMERMGEKSASNVIHA 533

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + + +N +  RFI++LG+R VG   AR+LA+Y+        +I+ ++    +D   L RV
Sbjct: 534 LEQSKNTTFARFIYALGVREVGEATARNLAQYF-------GDISRLLTATEED---LQRV 583

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---------- 651
             VG ++AQ IV F    +N        KEV   +   EK V  E+  ++          
Sbjct: 584 NDVGPVVAQFIVAFLSQQKN--------KEVIAKL--QEKGVHWEVIEQQDNPQPLLDTV 633

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            V TGTL+++ R +A+ ++ QLGA V+  +S+KT  ++ G+N GSKL KA+ LGV I+ E
Sbjct: 634 YVLTGTLEQLTRDEAKAHLQQLGATVTGSVSKKTHFLVAGENAGSKLTKAESLGVNILGE 693

Query: 712 EQFLFLLQQYNTTL 725
           +  + LL +Y  TL
Sbjct: 694 QDLINLLNEYGITL 707


>gi|294140434|ref|YP_003556412.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12]
 gi|293326903|dbj|BAJ01634.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12]
          Length = 683

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 258/716 (36%), Positives = 404/716 (56%), Gaps = 54/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           + +I+   +E++ L   ++ H+ CYY    P I D+EYD L ++   +  A P+      
Sbjct: 11  SFNIQAVAQEIAELTDILNGHNYCYYVDDAPSIPDAEYDRLLKQLKVLETAHPEYCF--- 67

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  ++GG       +V H  P LSL+ +++ E+   F  RI      K D +  F  
Sbjct: 68  PDSPTQRVGGVALAKFDQVVHLKPMLSLDNVFSDEEFEAFYNRI----NDKTDTAPTFCC 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRG 189
           EPK+DG  ++I Y  G +  A  RGDG +GED++  +R I +IP  L   N P ++EVRG
Sbjct: 124 EPKLDGLAVSILYRDGIYERAGTRGDGKTGEDITENVRTILSIPMKLRGENFPPLLEVRG 183

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---- 244
           EV + K  F +LN+   A G K + NPRNAA+G LR+L+     +R L F+ + LG    
Sbjct: 184 EVIMPKQAFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEP 243

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +T E+ A   Y+ L +++  GFPV+  V+Q ++   +++YY ++ + RS+L Y+IDG+V 
Sbjct: 244 ETWEL-ADHHYDQLMQLKSWGFPVSAEVKQCDSVKDVIAYYTDIMTRRSSLAYEIDGVVI 302

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q  LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+P+ +G
Sbjct: 303 KVDNIDQQAMLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPIFVG 362

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I  L            +++ D V+V+RAG+VIP++V I+ ++R  D
Sbjct: 363 GVTVSNATLHNADEIARL-----------GVKIKDTVIVRRAGDVIPQIVAIVADKRPDD 411

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A    FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E +KHF SR A +I+
Sbjct: 412 ASEIEFPTTCPVCDSLVER----LEGEAVA--RCTGGLFCEAQRKEAIKHFASRKALDID 465

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     +  PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 466 GMGDKVVEQLIDKE----LVESPADLFKLSASAMTMLDRM------GLKSATNLVKAIEV 515

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +  RF+++LGIR VG   A +LA Y+ S       ++ + A N +++   I+V  V
Sbjct: 516 AKQTTFSRFLYALGIREVGEATAANLASYFKS-------LDKLKAANAEEF---IKVDDV 565

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           G I+AQ +  F+    N+  V++L++     P+I    +  S  ++ +  V TGTL ++ 
Sbjct: 566 GIIVAQHLTHFFAQEHNLAVVDSLIQAGVNWPAIEEVAEE-SLSLKGQTWVLTGTLTQLN 624

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R+ A+  +  LGA V+  +S+ T  ++ G+  GSKL KAQ LG+KI++EE  L +L
Sbjct: 625 RNDAKAQLQALGAKVAGSVSKNTSCLVAGEAAGSKLTKAQDLGIKILDEEGLLAVL 680


>gi|293395040|ref|ZP_06639327.1| DNA ligase [Serratia odorifera DSM 4582]
 gi|291422447|gb|EFE95689.1| DNA ligase [Serratia odorifera DSM 4582]
          Length = 673

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 257/719 (35%), Positives = 409/719 (56%), Gaps = 58/719 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   K+++ L   + +H+  Y+    P I D+EYD L R    +  A P+L  ++ P  
Sbjct: 1   MEPNNKKINQLRTSLRHHEYLYHVLDAPEIPDAEYDRLMRELRTLEEAHPELITADSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ +    F  R+    + K    + F  E K
Sbjct: 60  --QRVGAAPLTAFDQVRHEVPMLSLDNVFDEDSYLAFYKRVQD--RLKSSEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP R++  NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLIGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +NDE      K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 MPQAGFEKMNDEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +  Y+ L + +  G PV++ VR       ++++Y +++  RS L +DIDG+V K+D+ 
Sbjct: 236 -PRSHYQRLMQFKAWGLPVSDRVRLCTGSDQVLAFYRQVEQDRSQLGFDIDGVVVKIDDI 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG  AR+PRW  + KF  ++  T + +++ Q+GRTG +TPVARLEPV + G  ++
Sbjct: 295 DLQERLGFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD V+V+RAG+VIP+VV ++ + R PDA+   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVEDRRPPDAREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPQHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKEALKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   + E     ++ PA +F L     T   ++      G  S  NL  ++ K +  +
Sbjct: 458 IIEQLVEKE----YVKNPAGLFRLTAGMLTGLDRM------GPKSAQNLASALEKAKQTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA ++ S                 D  +L +VP VG+++A
Sbjct: 508 FARFLYALGIREVGESTAANLAAHFGSLDKL----------RAADVEALKQVPDVGEVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE--------KNVSSEIENKKLVFTGTLQKI 661
           + +V F+    N   ++ L   VS  IG H         + + S    K +V TG+L ++
Sbjct: 558 KHVVNFFAEALNQQVIDEL---VSDDIGIHWPAPVVVAVEEIDSPFAGKTVVLTGSLSQL 614

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL Q
Sbjct: 615 SRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEAEMIRLLGQ 673


>gi|167586849|ref|ZP_02379237.1| DNA ligase, NAD-dependent [Burkholderia ubonensis Bu]
          Length = 691

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 267/714 (37%), Positives = 399/714 (55%), Gaps = 60/714 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L      I    P+L     P+ P  ++GG + 
Sbjct: 20  LRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQIEADHPELVT---PDSPTQRVGGAVA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  ED+  F  RI     K  D      + + +  E K DG 
Sbjct: 77  GGFTPVVHDAPMLSLNNGFEDEDIVAFDKRIADALDKAVDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE G FV A+ RGDG +GEDV+  +R I ++P ++   N+P +++VRGEV + K 
Sbjct: 137 AISLRYENGVFVQASTRGDGTTGEDVTQNVRTIRSLPLKLKGRNLPAVLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQ 254
           DF  LN+   A G++ +ANPRNAA+G LR+L+P     R L+FF +G+G           
Sbjct: 197 DFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGAPMPDTH 256

Query: 255 YEMLQKMRCLGFPVNNG---VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             +L     LG PVN     VR AN   G++ ++ ++   R +LPYDIDG+VYKV+    
Sbjct: 257 SALLDWYETLGLPVNRERAVVRGAN---GLLGFFRKIGEQRESLPYDIDGVVYKVNRRDE 313

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PR+ ++HKF  ++A T L+ ID+Q+GRTG +TPVARLEPV +GGA +TNA
Sbjct: 314 QERLGFVSRAPRFALAHKFPAQEALTTLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 373

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP-FSF 430
           TLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R PD  P F  
Sbjct: 374 TLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGAVLD-RRPDPAPEFVM 421

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C SR+ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ 
Sbjct: 422 PTECPVCGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKI 475

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L
Sbjct: 476 IDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTL 525

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI+ LGIRHVG   A+ LAK++ S       +N I+    ++   L+ V  VG I+A+
Sbjct: 526 ARFIYGLGIRHVGESTAKDLAKHFGS-------LNPIMDATVEE---LLEVNDVGPIVAE 575

Query: 611 AIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +I +F+    N   +E L    K   P      K     +  K +V TGTL  + R  A+
Sbjct: 576 SIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+ +
Sbjct: 636 EMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLEGH 689


>gi|77165170|ref|YP_343695.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707]
 gi|254433594|ref|ZP_05047102.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
 gi|123730661|sp|Q3JAI1|DNLJ_NITOC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76883484|gb|ABA58165.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707]
 gi|207089927|gb|EDZ67198.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
          Length = 675

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/704 (36%), Positives = 397/704 (56%), Gaps = 51/704 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++ + +L++ I+ +D  YY  + P++ DSEYD L R   A+   +P+L   + P     
Sbjct: 7   AKERIQALKELINNYDYAYYVVNNPLVPDSEYDRLIRELQALEENYPELITLDSPT---Q 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFTLEPKID 135
           ++G +   SL ++ H IP LSL   ++  +L  F  R+  R   ++ D    +  EPK+D
Sbjct: 64  RVGAKPVKSLGEIKHEIPMLSLNNAFHEGELADFHRRVKTRLGIERVD----YAAEPKLD 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  +++ Y+ G  V  A RGDG +GED++  IR IPT+  R+    IP ++EVRGEVY+ 
Sbjct: 120 GLAVSLLYQDGVLVQGATRGDGITGEDITHNIRTIPTVSLRLRGEKIPSLLEVRGEVYMP 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAK 252
           +  F   N E IA G KP+ NPRNAA+G LR+L+P     R L  F +G+G+    I   
Sbjct: 180 RQGFEQFNREQIAKGEKPFVNPRNAAAGSLRQLDPRITANRPLALFCYGVGQVEGGILPD 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E+L +++  G  +           G   YY  +  +R  LPY+IDG+V+KVD    Q
Sbjct: 240 RHSEILFQLKQWGLRILPYSEVVEELAGCEKYYQHLLDLRDKLPYEIDGVVFKVDYLDQQ 299

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  AR+PRW +++KF  ++  T++LDI++Q+GRTG LTPVARL+PV +GG  ++ AT
Sbjct: 300 QILGSLARAPRWALAYKFPAQEELTQILDIEVQVGRTGALTPVARLQPVFVGGVTVSKAT 359

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNE         G++ R  +DIR+GD V V+RAG+VIP++V +I+  R PD++PF  P 
Sbjct: 360 LHNE---------GEIQR--KDIRIGDTVYVRRAGDVIPEIVKVIMERRLPDSRPFQMPR 408

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S +V++     G  VA  RC+GGL C AQ+ E +KHF  R A +I GLG + ++
Sbjct: 409 QCPVCGSEIVKE----EGGAVA--RCSGGLYCPAQRKEAIKHFAGRRAMDINGLGDKLVE 462

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              K       ++  AD++ L + Q     ++      G  S TNL ++I + ++ +L R
Sbjct: 463 QLTKQG----LLKDVADLYGLTKEQLAGLERM------GQKSATNLINAIQQSKHTTLPR 512

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG   A+ LAK + S +  A      +    D          +G I+A  I
Sbjct: 513 FLYALGIREVGEATAQVLAKEFGSLEALASVSEERLQQVTD----------IGPIVAAHI 562

Query: 613 VEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
             F++ P N   ++ L K     P +   +  +   +  +  V TGTL+ + R +A+E +
Sbjct: 563 AAFFRQPHNRQIIQGLQKAGVCWPEV-EDKVQIVQPLLGRTFVLTGTLESMTREQAKERL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             LG  V+  +S  TD +I+G NPGSKL KA+ LG+ I++E  F
Sbjct: 622 QALGGKVNGSVSPHTDYLIIGANPGSKLVKARNLGITILDETYF 665


>gi|121604718|ref|YP_982047.1| DNA ligase [Polaromonas naphthalenivorans CJ2]
 gi|166216226|sp|A1VN98|DNLJ_POLNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120593687|gb|ABM37126.1| DNA ligase, NAD-dependent [Polaromonas naphthalenivorans CJ2]
          Length = 707

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 262/714 (36%), Positives = 401/714 (56%), Gaps = 56/714 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +++L  E+  H   YY   +P I D+EYD L +   A+  A P+L     P+ P  ++GG
Sbjct: 24  IAALRAELDLHAHRYYVLDEPSIPDAEYDRLFKELQALEAAHPELL---TPDSPTQRVGG 80

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGT 137
           +       V H IP LS+    + E    R F TR+ +    K+ D  + +  E K DG 
Sbjct: 81  KPLGQFASVRHRIPMLSIRTETDTEATGARNFDTRVRKELGLKESDPPVEYVAELKFDGL 140

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++RYE G  V AA RGDG  GEDV+  IR I  IP  L  + P ++EVRGEVY+ +++
Sbjct: 141 AMSLRYENGVLVQAATRGDGEVGEDVTQNIRTIRQIPLRLPADAPPVMEVRGEVYMRRDE 200

Query: 198 FLALND---EMIAVG---RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           F ALN+   E IA G    K + NPRNAA+G +R+L+P     R L+FF +G+G+ +   
Sbjct: 201 FEALNERQREKIAKGAKGEKTFVNPRNAAAGGVRQLDPAFAAERRLSFFAYGVGEITPPE 260

Query: 251 AKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             G      +E+LQ ++   FPV    R A     +++++  +   R  LPYDIDG+VYK
Sbjct: 261 EGGPVFETHFELLQTLKSWCFPVAAQTRLAYGAPELIAFHEAIGRQRDQLPYDIDGVVYK 320

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  +LQ+++G  +R PRW ++HK+  ++  T +L IDIQ+GRTG LTPVA+L PV +GG
Sbjct: 321 VNSLALQRKMGFVSREPRWAVAHKYPAQEQLTTVLAIDIQVGRTGKLTPVAKLAPVFVGG 380

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +TNATLHNED  +            +D+RVGD V+V+RAG+VIP+VV +++++R  DA
Sbjct: 381 VTVTNATLHNEDEAR-----------RKDVRVGDTVIVRRAGDVIPEVVSVLLDKRVQDA 429

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             FS P  CP+C S  VR+         A +RCTGGL C+AQ+ E + H+  + A  IEG
Sbjct: 430 PQFSMPRQCPVCGSDAVREEGE------ADYRCTGGLFCAAQRKEAILHYAHKRAVEIEG 483

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++    +      IR   D++ L        T + ++    + S +NL  ++ K 
Sbjct: 484 LGDKLVEQLVDTG----VIRTLPDLYRL------GFTSLASLDRMAEKSASNLVAALEKS 533

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +L RF+F LGIRHVG   A++LA+++        ++++I+  + +    L+ V  VG
Sbjct: 534 KQTTLPRFVFGLGIRHVGEATAKALARHF-------GQLDSIMDASEE---QLLEVADVG 583

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            I+A++I  F++ P N   VE L    V+   G         +  K  V TGTL  + R 
Sbjct: 584 PIVAKSIRTFFEQPHNREVVEQLRACGVTWEEGAPAAVAPKPLSGKTFVITGTLPGLSRD 643

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            A++ +   G  V+  +S+KTD ++ G + GSKL KA+ LGV +++E   L LL
Sbjct: 644 DAKDRIEAAGGKVAGSVSKKTDYVVAGLDAGSKLVKAEALGVAVIDEATLLALL 697


>gi|115314545|ref|YP_763268.1| DNA ligase [Francisella tularensis subsp. holarctica OSU18]
 gi|122325430|sp|Q0BMQ3|DNLJ_FRATO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115129444|gb|ABI82631.1| DNA ligase (NAD(+)) [Francisella tularensis subsp. holarctica
           OSU18]
          Length = 678

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 269/728 (36%), Positives = 410/728 (56%), Gaps = 65/728 (8%)

Query: 6   LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + P E  SI+    A+ EL +    L   +S     Y+   KPII DS+YD L R    +
Sbjct: 1   MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +  P     +  N  L+++GGE+      + H     SL  ++++E+LR F  +I    
Sbjct: 61  VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
               +  I    EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L+
Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169

Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
             N PE +EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L
Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229

Query: 237 NFFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
             + +G+G  S+  ++ + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ 
Sbjct: 230 KLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDGLV+KV+   LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TP
Sbjct: 290 LAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG +++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV
Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------SKDIRVGDRVIVRRAGDVIPEVV 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R  DAQ    P+ CP+C S+ + ++N +     A +RCTGG  C AQ  ERLKH
Sbjct: 399 KSLPQYRKSDAQIVEMPTNCPVCDSK-IENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I+ LG + ++        A  I+ PADI+ L   Q T   ++         S
Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFEQLTGLERM------AAKS 502

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N+ DSI K +  SL RFIF++GI+ +G   + +LA ++ S ++F           +  
Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDALANHFGSLESF----------RDAK 552

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650
           +  LI +  VG+IIA  IV F+ +  NI  VE  L    K  +P    H  N S     K
Sbjct: 553 FEELIEINYVGEIIANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNES--FTGK 610

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+ +   R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ 
Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670

Query: 711 EEQFLFLL 718
           E+    LL
Sbjct: 671 EDNLKDLL 678


>gi|326572929|gb|EGE22914.1| NAD-dependent DNA ligase [Moraxella catarrhalis CO72]
          Length = 691

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 273/712 (38%), Positives = 402/712 (56%), Gaps = 47/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+    +I  +E+RGEV 
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +        
Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   +Q +  LGF + +  + A +   I ++Y  +   RS LP++IDGLV KV++ SL
Sbjct: 254 TTQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLSL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N 
Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN          G++ R G  + VGD V V RAG+VIPKV  +I   R  DA+P   P
Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L
Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L 
Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIR VG   A SLA+ +        E+ +II     D  +L  VP +G+I AQ+
Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ +
Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|90408119|ref|ZP_01216289.1| DNA ligase [Psychromonas sp. CNPT3]
 gi|90310805|gb|EAS38920.1| DNA ligase [Psychromonas sp. CNPT3]
          Length = 667

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 262/714 (36%), Positives = 397/714 (55%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    K+L+   +E +Y    YY   +P I D++YDA+ ++  AI    P L      
Sbjct: 1   MAIALQVKKLTEQLEEYNYQ---YYVLDEPSISDAQYDAVFQQLKAIESEHPHLLHE--- 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  K+GG+      +V H +P LSL+ ++N E L+ FI R       K    + F +E
Sbjct: 55  NSPTQKVGGQALSKFEQVAHEMPMLSLDNMFNDEALQAFIQRA----SDKSIKEVAFCIE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I YE G  V AA RGDGH+GE+V+A ++ I  IP R+   NIP+ +EVRGE
Sbjct: 111 PKLDGLAVSIIYEHGLLVQAATRGDGHTGENVTANVKTISNIPLRLRGDNIPQRLEVRGE 170

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++ +  F  LN  + A+G K + NPRNAA+G LR+L+     +R L F+ + +G     
Sbjct: 171 VFMPQLGFDKLNARLEALGEKSFVNPRNAAAGSLRQLDSKIAASRPLAFYCYAVGVFDGD 230

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               QY  +Q+++  G PV++ + +       ++YY  + + R +L Y IDG+VYKVD+ 
Sbjct: 231 LENSQYARMQQLKGWGLPVSSEISRVQGLDACLAYYRNIVTQRESLGYAIDGVVYKVDDI 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  AR+PRW  ++KFA ++A TR+ +++ Q+GRTG +TPVA+L PV +GG  ++
Sbjct: 291 DLQDKLGFVARAPRWASAYKFAAEEAITRVENVEFQVGRTGAITPVAKLRPVFVGGVTVS 350

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPF 428
           NATLHN+D I  L            I +GD V+V+RAG+VIP+V  +++  R     Q  
Sbjct: 351 NATLHNQDEIARL-----------GILIGDDVVVRRAGDVIPQVARVLLENRDLSQTQEI 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FPS CP+C S + R +   T       RCTGGL C+AQ+ E +KHF SR A +I+GLG 
Sbjct: 400 HFPSVCPVCSSALERIVGEAT------IRCTGGLYCAAQRKEAIKHFASRKALDIDGLGN 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +      +     I+ PA +F L      +  +I  +   G VS   + +S+   +  
Sbjct: 454 KLVALLVDHD----LIKDPAQLFDL------TLAQISTLPRMGSVSAKKVLNSLQVSKKT 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF+++LGIR VG   A +LA +Y           N+ A  +    +L  V  VGDI+
Sbjct: 504 TLSRFLYALGIREVGEATANNLAMHY----------KNLSALQDAGIEALKEVADVGDIV 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I  F++ P N+  V  LL+     P I   E    + +  +  V TG+   I R   
Sbjct: 554 AKNIYYFFRQPSNLQVVNRLLEAGVHWPDIQAVESTTQTLV-GQTFVITGSFANISRSDI 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +  LGA VS  +S+KT+ +I G   GSKLEKAQ L + IM+E+Q   LL +
Sbjct: 613 KSELQALGAKVSGSVSKKTNTLIAGTAAGSKLEKAQALDINIMDEQQLFTLLNK 666


>gi|304398312|ref|ZP_07380186.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
 gi|304354178|gb|EFM18551.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
          Length = 672

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/710 (35%), Positives = 401/710 (56%), Gaps = 59/710 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   + +H+  Y+    P + D+EYD L R    +    PDL     P+ P  ++G 
Sbjct: 8   ITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLI---TPDSPTQRVGA 64

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
                  +V H +P LSL+  ++      F  R+    +  +D  I +  E K+DG  ++
Sbjct: 65  APLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKNSED--ITYCCELKLDGAAVS 122

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           + YE G  V AA RGDG +GE+++A +R I  IP R+   NIP  +EVRGEV++++  F 
Sbjct: 123 LMYENGLLVQAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEVFMTQRGFE 182

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYE 256
            LN+E      K +ANPRNAA+G LR+L+P     R L FF +G G  +  E+       
Sbjct: 183 KLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM-PHSHMA 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ+ +  G PV++ +++ +     +++Y E++  R  L +DIDG+V KVD  +LQ+QLG
Sbjct: 242 RLQQFKAWGLPVSDRIKRVHNAEEALAFYREIEQQRPNLGFDIDGVVIKVDSQALQEQLG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN 
Sbjct: 302 FVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNA 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            +R+GDRV+++RAG+VIP+VV++++ ER  + +   FP+ CP+
Sbjct: 362 DEIERL-----------GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVFPAHCPV 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R      G+ V   RCTGGL C AQ+ E LKHFVSR A +++G+G + +D   +
Sbjct: 411 CGSEVER----VEGESVT--RCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVE 464

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     +  PAD+F L      +  K+  +   G  S  N+ D++ K ++ +L RF+++
Sbjct: 465 KE----YVSTPADLFRL------TAGKLTGLDRMGPKSAQNVVDALEKAKSTTLARFLYA 514

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +LA ++   Q             + D  +LI VP VG ++A  +  F 
Sbjct: 515 LGIREVGEATAANLANHFGELQKVM----------DADLEALIAVPDVGKVVATHVRNFM 564

Query: 617 QNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +   N      ++++++  IG H         + + S    K +V TG+L ++ R  A+ 
Sbjct: 565 EEESN----REVIRQLTEEIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDAKA 620

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 621 QLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670


>gi|209695779|ref|YP_002263709.1| NAD-dependent DNA ligase LigA [Aliivibrio salmonicida LFI1238]
 gi|254781250|sp|B6EJQ6|DNLJ_ALISL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|208009732|emb|CAQ80037.1| NAD-dependent DNA ligase [Aliivibrio salmonicida LFI1238]
          Length = 669

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 262/712 (36%), Positives = 409/712 (57%), Gaps = 50/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SIE   K L  L+++++YH   YY    P + D+EYD + ++   I    P+    + P
Sbjct: 1   MSIE---KTLDELKKQLNYHAYRYYVEDSPELPDAEYDRMMQQLLLIEKEHPEFMTVDSP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GGE      +V H IP LSL+  +N  +L  F  RI    +   D+   F  E
Sbjct: 58  S---QRVGGEALGGFTQVQHEIPMLSLDNAFNDNELDSFEKRIND--RLISDSVSLFCCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  +++ Y  G  V A  RGDG +GE+++  +R I  IP  L     P  +EVRGE
Sbjct: 113 PKLDGLAVSLLYVDGLLVQAGTRGDGATGENITENVRTIRCIPLTLQGEGWPTRLEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++ K  F ALN+  +    KP+ANPRNAA+G LR+L+     TR L+F+ + +G     
Sbjct: 173 VFMPKAGFDALNERALKRAEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGIIEGG 232

Query: 250 FAKG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +G  Y+   +++  G P+    +Q ++   + +YY ++   R  L Y+IDG+V KVD 
Sbjct: 233 ELEGSHYQRFVQLKNWGLPMCEETKQCHSLTDVKAYYKDILERRDALKYEIDGVVIKVDS 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  +
Sbjct: 293 ISLQEQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPIFVGGVTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            + +GD V+++RAG+VIP++V ++   R  D++  
Sbjct: 353 SNATLHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPEDSKAI 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P+ CP C S++ R      G++V   RC  GL C AQ+ E LKHFVSR A +++GLG 
Sbjct: 402 IYPTTCPACDSQLER----IEGEVVT--RCVAGLVCPAQRKEALKHFVSRKALDVDGLGD 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L     T   ++      G  S  N+ +++NK +  
Sbjct: 456 KVVEQLVDKE----MVETPADLFKLSAGVLTVLDRM------GPKSAQNVVNALNKAKET 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA ++       Q +N I   ++  +  LI V  VGDI+
Sbjct: 506 TLSRFLYSLGIREVGEATAANLALHF-------QTLNAI---SSATFEQLIEVSDVGDIV 555

Query: 609 AQAIVEFYQNPRNICAVEAL-LKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I+ F+  P N   +E L L  V+ P I   +++V   + +K +V TGTL K++R++A
Sbjct: 556 AKHILGFFSEPHNQAVIENLQLMGVNWPDIKALDESVPQPLADKVVVLTGTLYKLKRNEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + +LGA V+  +S+ TDI+  G+  GSKL KA++LGV+IMNEEQ + +L
Sbjct: 616 KAALQELGAKVAGSVSKNTDILFAGEAAGSKLAKAEELGVEIMNEEQLIEIL 667


>gi|261340751|ref|ZP_05968609.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
 gi|288317173|gb|EFC56111.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
          Length = 671

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/719 (35%), Positives = 408/719 (56%), Gaps = 61/719 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SIEQ   +L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+
Sbjct: 3   SIEQ---QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELI---TPD 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G E   +  +V H +P LSL+ +++ E    F  R+    + K  +++ +  E 
Sbjct: 57  SPTQRVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSSDALTWCCEL 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  ++I YE G  V AA RGDG +GED++  +R I  IP ++   NIP  +EVRGEV
Sbjct: 115 KLDGLAVSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           ++ +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I 
Sbjct: 175 FLPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----IL 230

Query: 251 AKGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             G+        L + +  G PV+N V+  ++   ++++Y++++  R TL +DIDG+V K
Sbjct: 231 EGGELPDTHLGRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIK 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G
Sbjct: 291 VNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            L++NATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  D 
Sbjct: 351 VLVSNATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPDDT 399

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +   FPS CP+C S V R      G+ V   RCTGGL C AQ+ E LKHFVSR A +++G
Sbjct: 400 RAIEFPSHCPVCGSDVER----VEGEAVT--RCTGGLICGAQRKESLKHFVSRRAMDVDG 453

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++   
Sbjct: 454 MGDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLDRMGPKSAQNVVNALETA 503

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +  RF+++LGIR VG   A  LA Y+ + +   +   +           L +VP VG
Sbjct: 504 KKTTFARFLYALGIREVGEATAAGLAAYFGTLEALEKASID----------ELQKVPDVG 553

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            ++A  +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++
Sbjct: 554 IVVATHVFNFFAEESNREVIGKLLAEGISWPAPVVVNAEE-IDSPFAGKTVVLTGSLSQL 612

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL +
Sbjct: 613 SRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 671


>gi|293391716|ref|ZP_06636050.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952250|gb|EFE02369.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 671

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 257/708 (36%), Positives = 410/708 (57%), Gaps = 57/708 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L + + +H+  Y+    P I DSEYD L  +  A+    P+L  ++ P     +
Sbjct: 6   QQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPT---QR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G        ++ H IP LSL+  ++ E+   F+ RI        +  + F  EPK+DG 
Sbjct: 63  VGARPLSEFAQIRHEIPMLSLDNAFSNEEFFAFVKRIQDRLALVPE-PLTFCCEPKLDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            ++I Y  G    AA RGDG +GED++  IR I  IP ++L+ N P  +EVRGEV++   
Sbjct: 122 AVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPHA 181

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSEIFAKG 253
            F  LN+  +  G K +ANPRNAA+G LR+L+P   ++    LN +  G+ +  E+    
Sbjct: 182 GFERLNERALQHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVEL-PPT 240

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E LQ ++ +G PVNN ++  +    ++++Y  + + RS+L YDIDG V K+++ +LQ+
Sbjct: 241 HFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQ 300

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +++PRW I++KF  ++  T L +++ Q+GRTG +TPVA+L+PV + G  ++NATL
Sbjct: 301 RLGFISKAPRWAIAYKFPAQEELTELNEVEFQVGRTGAITPVAKLKPVFVAGVTVSNATL 360

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L           +I +GD V+++RAG+VIP+++ ++ + R  DA+   FP+ 
Sbjct: 361 HNGDEIERL-----------NIAIGDTVIIRRAGDVIPQIIGVVHDRRPADARQIVFPTE 409

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S +VR      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ 
Sbjct: 410 CPVCGSLIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQ 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     I  PAD+F L     T+ +++E +   G  S  N   S+ K +N +L RF
Sbjct: 464 LVDRE----LIHTPADLFKLDL---TTLSRLERM---GPKSAENALTSLEKAKNTTLARF 513

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG   A +LA ++ + +          A  N D   L +VP VG+++A  I 
Sbjct: 514 IFALGIRDVGEATALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 563

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKAQ 667
            F+    N+  VE L+ +     G H + V  +       + K +V TGTL ++ R+ A+
Sbjct: 564 VFWHEAHNVAVVEDLIAQ-----GVHWETVDVQEVKENPFKGKTVVLTGTLSQMGRNDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
             + QLGA VS  +S KTD +I G+  GSKL KA +LGV++++EE+FL
Sbjct: 619 ALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFL 666


>gi|326564268|gb|EGE14498.1| NAD-dependent DNA ligase [Moraxella catarrhalis 103P14B1]
          Length = 691

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 272/712 (38%), Positives = 402/712 (56%), Gaps = 47/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE+     +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+    +I  +E+RGEV 
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +        
Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +L
Sbjct: 254 TTQSGAMQWLGQLGFEIAPS-KVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N 
Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN          G++ R G  + VGD V V RAG+VIPKV  +I   R  DA+P   P
Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L
Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L 
Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIR VG   A SLA+ +        E+ +II     D  +L  VP +G+I AQ+
Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ +
Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|326574755|gb|EGE24691.1| NAD-dependent DNA ligase [Moraxella catarrhalis 101P30B1]
          Length = 691

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 272/712 (38%), Positives = 402/712 (56%), Gaps = 47/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE+     +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+    +I  +E+RGEV 
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +        
Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +L
Sbjct: 254 TTQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N 
Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN          G++ R G  + VGD V V RAG+VIPKV  +I   R  DA+P   P
Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L
Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L 
Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIR VG   A SLA+ +        E+ +II     D  +L  VP +G+I AQ+
Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ +
Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|312112463|ref|YP_003990779.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
 gi|311217564|gb|ADP76168.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
          Length = 670

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 263/723 (36%), Positives = 407/723 (56%), Gaps = 75/723 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A K +  L + ++ ++  YY   +P + DSEYD L +   A+   +PDL   + P+  
Sbjct: 4   QAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTKDSPS-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+   +  KV H  P LSL   +N  DLR F  R+    +++  + + +  E KI
Sbjct: 62  -QRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRV----RQEVGDDVAYVCELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L LN P  +E RGE Y+ 
Sbjct: 117 DGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLP--LRLNEPVTLEARGEAYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN++    G + +ANPRNAA+G LR+L+P    +R+L+ FV+GL    E+    
Sbjct: 175 KASFERLNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELGIAS 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
               L  ++ LGF  N   R+      ++ + NE +  R  LPY+IDG+V KVD F+ Q+
Sbjct: 235 HSAALDYLQQLGFKTNPERRRCANMDEVIQFVNEWQEKRPQLPYEIDGIVIKVDSFAQQE 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  A+SPRW I++KF  ++  T+L+DI++ +GRTG++TP A LEPV + G  +  ATL
Sbjct: 295 QLGATAKSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQRATL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED+I+            +DIR+GD V++K+AG++IP+VV+++ + R  +  PF  P+ 
Sbjct: 355 HNEDFIR-----------EKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVMPTH 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +VR      G++  A RC     C AQ  E L HFVSR A NIEGLG++ +  
Sbjct: 404 CPECASELVR----IEGEV--ALRCINP-KCPAQIREGLIHFVSRQAMNIEGLGEKVISQ 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+       I   ADI+ L + Q     ++      G+ S TNL  +I   +  SLER 
Sbjct: 457 LFRE----GLIHDVADIYRLTKDQLIDLERM------GEKSATNLLHAIEASKQNSLERL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSY---QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +F LGIRHVGA+ A+ LA+++ +    QN  +E              L+ +  +G+ +A 
Sbjct: 507 LFGLGIRHVGAKAAKVLAEHFETMDRLQNATKE-------------ELMAIHEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEV-------------SPSIGRHEKNVSSEIENKKLVFTGT 657
           +IV ++  P     V+ LL E+             +P  G    +V S    K +V TG 
Sbjct: 554 SIVTYFAKPE----VKELLNELRAYGVNMEYKGPKTPKPG----DVHSYFAGKTVVLTGK 605

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+ + R++A+E + QLG  V+  +S+ TD++I G + GSKL KAQQL ++I +E +FL  
Sbjct: 606 LESLSRNEAKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDETRFLEE 665

Query: 718 LQQ 720
           ++Q
Sbjct: 666 IEQ 668


>gi|253701546|ref|YP_003022735.1| DNA ligase, NAD-dependent [Geobacter sp. M21]
 gi|251776396|gb|ACT18977.1| DNA ligase, NAD-dependent [Geobacter sp. M21]
          Length = 668

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 267/709 (37%), Positives = 391/709 (55%), Gaps = 52/709 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L  EI  H+  YY+   P I D+EYDAL R    +  + PDLA    P+ P  
Sbjct: 6   AAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASHPDLAL---PDSPTG 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG       +V H+ P LSLE  +  +D+  F  R+ RF        I +  EPK+DG
Sbjct: 63  RVGGRPVAKFTQVRHTTPMLSLENAFTDKDIVDFDDRVKRFLGLSGQAEIGYVCEPKMDG 122

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             + + Y +G     + RGDG  GE+V+  ++ I  IP R+ +   P ++ VRGEVY+  
Sbjct: 123 VAVELVYREGLLAIGSTRGDGVVGEEVTQNLKTIKDIPLRLQTEEPPRLLTVRGEVYLPL 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG 253
             F   N E    G  P+ANPRNAA+G LR+L+ + IT  R L+ F +  G+   +    
Sbjct: 183 EPFRKFNQEREEAGEPPFANPRNAAAGSLRQLD-SKITAKRPLSIFCYAPGEVDGVAFDS 241

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q   L  +     PVN   +  +   G++ YY+EM   R  LPY+IDG+V KVD FSLQ+
Sbjct: 242 QSHFLSTIPTWRIPVNPLTKLVSGVQGVLDYYHEMMEKRDDLPYEIDGVVVKVDRFSLQR 301

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LGE++RSPRW I+ KF  +QA+T + DI  Q+GRTG++TPVA LEPVN+ G +++ ATL
Sbjct: 302 DLGEKSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPVAHLEPVNVSGVMVSRATL 361

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN + ++            +DIR GD V+V+RAG+VIP VV ++V +R         P  
Sbjct: 362 HNWEEME-----------RKDIRRGDTVVVERAGDVIPAVVQVLVEKRQGSETLLPVPQA 410

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C   VVR      G++  A RC  GL C AQ LER+KHF +R A +I+GLG++ ++ 
Sbjct: 411 CPVCGGEVVR----IPGEV--AVRCV-GLNCPAQALERVKHFAARRAMDIDGLGEKFIEQ 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISL 550
               +     IR  ADI+ L           E+ + F   G     NL +SI   +   L
Sbjct: 464 LLNLK----LIRNVADIYRLTE---------EDFMRFERMGKKLAENLLNSIAASKEREL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R IF+LGIRHVG   A+ LA  + S +N        +A  +++ L+ IR   VG  +A 
Sbjct: 511 SRLIFALGIRHVGEHTAKLLAGAFGSMEN--------LAAASEEELTSIRE--VGPQVAA 560

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F+++  N+  +   LKE   +    EK V      K  VFTG L+K  R +A++ V
Sbjct: 561 SIADFFKSEENLEVLRE-LKEHGVNPKAEEKRVGGRFTGKTFVFTGALEKFTRDEAKKMV 619

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G   +  +S+KTD ++ G + GSKLEKAQQLGV++++E+ FL L++
Sbjct: 620 ELEGGHAAGSVSKKTDYVVAGADAGSKLEKAQQLGVRVLSEDDFLELMR 668


>gi|332162521|ref|YP_004299098.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606605|emb|CBY28103.1| DNA ligase [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666751|gb|ADZ43395.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860741|emb|CBX71032.1| DNA ligase [Yersinia enterocolitica W22703]
          Length = 672

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/711 (35%), Positives = 411/711 (57%), Gaps = 49/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  ++ P  
Sbjct: 1   MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ E    F  R++   ++ D   + F  E K
Sbjct: 60  --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAD--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           +    F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 MPLAGFEQLNNEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +   + L + R  G PV++ V+       ++++Y +++  R  L +DIDG+V KVD  
Sbjct: 236 -PRSHIQRLMQFRAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 DLQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++++R  DA+  +
Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEIT 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPEHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   + +     +  PAD+FTL      +  K+  +   G  S  NL  ++ K +  +
Sbjct: 458 IIEQLVEKQ----YVENPADLFTL------TAGKLTGLDRMGPKSAQNLIVALEKAKQTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA ++ + +N              D  +L  VP VG+++A
Sbjct: 508 FARFLYALGIREVGEATAANLAAHFRNLENL----------RAADIEALKSVPDVGEVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           + +V F     N   +EAL K ++    +    + + S    K +V TG+L  + R +A+
Sbjct: 558 KHVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 618 DRLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 668


>gi|315634861|ref|ZP_07890143.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
 gi|315476413|gb|EFU67163.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
          Length = 671

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 259/708 (36%), Positives = 408/708 (57%), Gaps = 57/708 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L + + YH+  Y+    P I DSEYD L  +  A+    P+L  ++ P     +
Sbjct: 6   QQQIDDLRKTLRYHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELITADSPT---QR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKIDG 136
           +G        ++ H +P LSL+  ++ E+   F+ RI  R     +   + F  EPK+DG
Sbjct: 63  VGARPLSEFAQIKHELPMLSLDNAFSDEEFLAFVKRIQDRLVLVPE--PLTFCCEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             ++I Y  G    AA RGDG +GED++  IR I  IP ++L+ N P  +EVRGEV++  
Sbjct: 121 LAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPH 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKG 253
           + F  LN+  +  G K +ANPRNAA+G LR+L+P   + R L F  + +G    I     
Sbjct: 181 DGFERLNERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQGIDLPPT 240

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E LQ ++ +G PVN+ +R  +    ++++Y  M   RS+L YDIDG V KV++  LQ+
Sbjct: 241 HFERLQWLKSIGVPVNSEIRLCDGVENVLNFYRTMMEKRSSLGYDIDGTVLKVNDIELQQ 300

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L+PV + G  ++NATL
Sbjct: 301 RLGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNATL 360

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L           +I +GD V+++RAG+VIP+++ ++ + R  +A+   FP+ 
Sbjct: 361 HNGDEIERL-----------NIAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQIVFPTR 409

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S +VR      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ 
Sbjct: 410 CPVCDSLIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGVGAKLIEQ 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L     T+ T++E +   G  S  N   S+ K ++ +L RF
Sbjct: 464 LVDRE----LVHTPADLFKLDL---TTLTRLERM---GPKSAENALASLEKAKHTTLARF 513

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG   A +LA ++ + +          A  N D   L +VP VG+++A  I 
Sbjct: 514 IFALGIRDVGEATALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 563

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKAQ 667
            F++   N+  V  L+ +     G H + V  +       + K +V TGTL ++ R+ A+
Sbjct: 564 VFWREEHNVAVVNDLIAQ-----GVHWETVEVQDVKENPFKGKTVVLTGTLSQMGRNDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
             + QLGA VS  +S KTD +I G+  GSKL KA +LGV++++EE+FL
Sbjct: 619 ALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFL 666


>gi|146312580|ref|YP_001177654.1| NAD-dependent DNA ligase LigA [Enterobacter sp. 638]
 gi|190359255|sp|A4WD23|DNLJ_ENT38 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145319456|gb|ABP61603.1| DNA ligase, NAD-dependent [Enterobacter sp. 638]
          Length = 671

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/715 (35%), Positives = 406/715 (56%), Gaps = 53/715 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SIEQ   +L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+
Sbjct: 3   SIEQ---QLTQLRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELV---TPD 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G     S  +V H +P LSL+ +++ E    F  R+    +  D  ++ +  E 
Sbjct: 57  SPTQRVGAAPLASFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSAD--TLTWCCEL 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           K+DG  ++I YE G  V AA RGDG +GED++A +R I  IP  L   NIP  +EVRGEV
Sbjct: 115 KLDGLAVSILYENGLLVRAATRGDGTTGEDITANVRTIRAIPLTLRGDNIPARLEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG-KTSEI 249
           ++ +  F  +NDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G     +
Sbjct: 175 FLPQKGFEKINDEARRTGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGV 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                   L + +  G PV+N V+  ++   ++++Y++++  R +L +DIDG+V KV+  
Sbjct: 235 LPDTHLGRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPSLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++
Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  D +   
Sbjct: 355 NATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREIV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G++V   RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPAHCPVCGSDVER----VEGEVVT--RCTGGLICGAQRKEALKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      S  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------SAGKLTGLDRMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA ++ + +   +          DD   L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEQLEKA-------TIDD---LQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL+E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 THVFNFFAEESNRDVIGKLLEEGIHWPAPVVINVEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  +GA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L L  +
Sbjct: 617 AKARLVAIGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLFGE 671


>gi|311104688|ref|YP_003977541.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
 gi|310759377|gb|ADP14826.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
          Length = 702

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 265/722 (36%), Positives = 396/722 (54%), Gaps = 70/722 (9%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           EI  H+  YY Y +P I D+EYD L R   A+    P+L     P  P  ++G     + 
Sbjct: 20  EIEQHNVRYYVYDEPSISDAEYDGLMRELQALEAEHPELV---TPESPTQRVGAAPVSAF 76

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-----DNSIFFTLEPKIDGTMITI 141
             V H +P LSL   ++ ED+  F  R+    +          + +F  E K+DG  I++
Sbjct: 77  GSVRHVVPMLSLGNAFDEEDVAAFDRRVTDTLRGAGLLGPAQQADYFC-ELKLDGLAISL 135

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
           RYE G+ V AA RGDG +GEDV++ IR I  IP  L    P+++EVRGEV +++ DF  L
Sbjct: 136 RYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGTFPKVLEVRGEVLMNRADFEKL 195

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS------------- 247
           N        K + NPRNAA+G LR+L+P     R L FF +G G+               
Sbjct: 196 NQAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLAGTQGGLFAEA 255

Query: 248 --------EIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
                   ++  K    ML  +  LG PVN     +A+   G++++Y ++  +R  LPYD
Sbjct: 256 SAGAAEASQLPEKSHGAMLDWLASLGLPVNVKHNHRASGAEGLMAFYAKVGKLRPELPYD 315

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    QK LG  AR+PR+ ++HKFA ++A+T LLDI++Q+GRTG +TPVARL
Sbjct: 316 IDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGAITPVARL 375

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV +GG  +TNATLHNED I+            +D+R+GD V+V+RAG+VIP+V+  ++
Sbjct: 376 KPVFVGGVTVTNATLHNEDEIR-----------RKDVRIGDTVIVRRAGDVIPEVLGPVL 424

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R  DA+ F  P+ CPIC S + R L  +T       RCTGGL C AQ+ + L H  SR
Sbjct: 425 EKRPDDAREFVMPTACPICGSAIER-LEDET-----IARCTGGLFCGAQRKQTLWHAASR 478

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG++ +D    S      ++  AD+++L+  +     ++      G  S  NL
Sbjct: 479 KALDIEGLGEKLVDQLVDSG----RVKTLADLYSLRPLELVGLDRM------GQKSADNL 528

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I+K R  +L R +++LGIRHVG   AR +A+++ S       I+ I+  + D   +L
Sbjct: 529 VAAIDKARAPALNRLLYALGIRHVGETTARDVARHFGS-------IDAIMDADED---AL 578

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             VP VG ++A +I  F+    N   +E L  +    +       ++ +  K  V TGTL
Sbjct: 579 SSVPDVGPVVAASIRRFFAEQHNRDVIEQLKAQGVNPVAEAAPQATT-LAGKTFVLTGTL 637

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LGV +++E+    LL
Sbjct: 638 PNWTREEASMRIQAAGGKVSGSVSKKTAYLVAGEDSGSKLAKAQELGVTVLDEDGLKTLL 697

Query: 719 QQ 720
            +
Sbjct: 698 GE 699


>gi|30249713|ref|NP_841783.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
 gi|75540341|sp|Q82TW6|DNLJ_NITEU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|30180750|emb|CAD85664.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
          Length = 681

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 264/723 (36%), Positives = 404/723 (55%), Gaps = 68/723 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L +L   I+ HD  YY    P+I D+EYDAL R    +   +P L     P+ P  ++
Sbjct: 9   ERLQALRAAIALHDFHYYVQDAPVIPDAEYDALFRTLQQLEQQYPHLV---TPDSPTQRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G        ++TH  P LSL   ++ E++  F  RI    +  + + + + +EPK DG  
Sbjct: 66  GAPPLKVFAQLTHQTPMLSLANAFSEEEVTAFDRRI---REALNIDRVDYAVEPKFDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVYISKND 197
           I++ Y  G     A RGDG++GED++  +R IP+IP  L +  P    EVRGEV + K D
Sbjct: 123 ISLIYANGILTKGATRGDGYTGEDITLNLRTIPSIPLRLQVPFPTGQFEVRGEVVMLKTD 182

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE---IFAK 252
           F  LN++    G K + NPRNAA+G LR+L+ + IT  R L FF +G+G   E   IF+ 
Sbjct: 183 FERLNEQQRKNGEKTFVNPRNAAAGSLRQLD-SRITAMRRLTFFAYGIGAYHEDQPIFST 241

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTF---HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
              E+L  +    F V    RQ++T    +G+++YY EM ++R +LPY+IDG+VYKV++ 
Sbjct: 242 -HSEILAYLATQQFLV---ARQSSTVMGANGLLAYYREMNAVRLSLPYEIDGVVYKVNDL 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q++LG  +R+PR+ I+HKF  ++ ST LL I+IQ+GRTG LTPVARL PV +GG  +T
Sbjct: 298 AQQEKLGYVSRAPRFAIAHKFPAQEVSTELLAIEIQVGRTGALTPVARLAPVFVGGVTVT 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            + I +GD V+V+RAG+VIP+VV +IV  R   AQ F 
Sbjct: 358 NATLHNEDEVQ-----------RKQIMIGDTVIVRRAGDVIPEVVAVIVERRPTHAQAFV 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C S+ VR  +       A  RCTGGL C AQ+ + + HF SR A +I+GLG++
Sbjct: 407 MPDHCPVCGSKAVRLPDE------AVTRCTGGLYCPAQRKQAILHFASRRAIDIDGLGEK 460

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRR 546
            +D     E     +  PAD++ L          I+ + G       S  NL  +I   +
Sbjct: 461 LVDQLIDRE----LVHTPADLYRL---------DIDTLAGLERMAGKSARNLVTAIEDSK 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIRHVG   A++LA +         +++ ++  N +    L ++P +G 
Sbjct: 508 KTTLPRFIYALGIRHVGEATAKALASH-------TGDLDRLMDMNAE---QLQQIPDIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           I+AQ+I +F+    N   +E LL      E    I +     +  +  K  V TGTL  +
Sbjct: 558 IVAQSIADFFSEAHNREVIEQLLSCGLQWEKPSHIAQPSSRTNLAVPGKTFVLTGTLPTM 617

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+  + Q G  V+  +S  T  ++ G +PGSK  +A +LG+ +++E+Q L LL+  
Sbjct: 618 TRDQAKNRIEQQGGKVTGSVSSATSYVVAGSDPGSKYARAIELGIPVLDEDQLLSLLRDT 677

Query: 722 NTT 724
           +++
Sbjct: 678 SSS 680


>gi|238785571|ref|ZP_04629551.1| DNA ligase [Yersinia bercovieri ATCC 43970]
 gi|238713506|gb|EEQ05538.1| DNA ligase [Yersinia bercovieri ATCC 43970]
          Length = 670

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 254/710 (35%), Positives = 414/710 (58%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  S+ P  
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLESQHPELITSDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ E    F  R++   ++ +   + F  E K
Sbjct: 60  --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRTE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250
           + +  F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+N V+       ++++Y +++  R+ L +DIDG+V KVD+  
Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVQLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PEHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L      +  K+  +   G  S  NL  ++ + +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFEL------TAGKLTGLDRMGPKSAQNLIVALERAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA +   ++N A    N+ A + D+  S   VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAH---FRNMA----NLRAADIDELKS---VPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +EAL K +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLGEEHNQRVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +T LGA VS  +SRKTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 RLTALGAKVSGSVSRKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668


>gi|295401729|ref|ZP_06811695.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294976216|gb|EFG51828.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 670

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 263/723 (36%), Positives = 407/723 (56%), Gaps = 75/723 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A K +  L + ++ ++  YY   +P + DSEYD L +   A+   +PDL   + P+  
Sbjct: 4   QAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTKDSPS-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+   +  KV H  P LSL   +N  DLR F  R+    +++  + + +  E KI
Sbjct: 62  -QRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRV----RQEVGDDVAYVCELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L LN P  +E RGE Y+ 
Sbjct: 117 DGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLP--LRLNEPVTLEARGEAYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN++    G + +ANPRNAA+G LR+L+P    +R+L+ FV+GL    E+    
Sbjct: 175 KASFERLNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELGIAS 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
               L  ++ LGF  N   R+      ++ + NE +  R  LPY+IDG+V KVD F+ Q+
Sbjct: 235 HSAALDYLQQLGFKTNPERRRCANMDEVMQFVNEWQEKRPQLPYEIDGIVIKVDSFAQQE 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  A+SPRW I++KF  ++  T+L+DI++ +GRTG++TP A LEPV + G  +  ATL
Sbjct: 295 QLGATAKSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQRATL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED+I+            +DIR+GD V++K+AG++IP+VV+++ + R  +  PF  P+ 
Sbjct: 355 HNEDFIR-----------EKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVMPTH 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +VR      G++  A RC     C AQ  E L HFVSR A NIEGLG++ +  
Sbjct: 404 CPECASELVR----IEGEV--ALRCINP-KCPAQIREGLIHFVSRQAMNIEGLGEKVISQ 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+       I   ADI+ L + Q     ++      G+ S TNL  +I   +  SLER 
Sbjct: 457 LFRE----GLIHDVADIYRLTKDQLIDLERM------GEKSATNLLHAIEASKQNSLERL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSY---QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +F LGIRHVGA+ A+ LA+++ +    QN  +E              L+ +  +G+ +A 
Sbjct: 507 LFGLGIRHVGAKAAKVLAEHFETMDRLQNATKE-------------ELMAIHEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEV-------------SPSIGRHEKNVSSEIENKKLVFTGT 657
           +IV ++  P     V+ LL E+             +P  G    +V S    K +V TG 
Sbjct: 554 SIVTYFAKPE----VKELLNELRAYGVNMEYKGPKTPKPG----DVHSYFAGKTVVLTGK 605

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+ + R++A+E + QLG  V+  +S+ TD++I G + GSKL KAQQL ++I +E +FL  
Sbjct: 606 LESLSRNEAKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDETRFLEE 665

Query: 718 LQQ 720
           ++Q
Sbjct: 666 IEQ 668


>gi|325121133|gb|ADY80656.1| DNA ligase [Acinetobacter calcoaceticus PHEA-2]
          Length = 679

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 270/721 (37%), Positives = 395/721 (54%), Gaps = 59/721 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ R+    L Q I+ H+  YY   +P I DSEYD L  +  A+   +PDL +S+ P  
Sbjct: 7   IEQMRQ----LIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSPT- 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              K+GG+       VTH +P LSL  ++N EDL  F  R+    ++  +  + + +E K
Sbjct: 62  --TKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVELK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGE 190
           +DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVRGE
Sbjct: 117 LDGLAISLWYENGLLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPHLLEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V + K+ F  LN E  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +    
Sbjct: 177 VLMPKSGFEKLNAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPN 236

Query: 250 FA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 ++ LQ +  LGF +       N+   +   Y +++  RS L  +IDG+V KVD+
Sbjct: 237 HGLTTMHDSLQWLTKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKVDD 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG  +
Sbjct: 297 LKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+  
Sbjct: 357 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAEIV 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGLG 
Sbjct: 406 HLPENCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGD 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +  
Sbjct: 460 RWVESLLHLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASKKT 511

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIR VG   AR LA  + + +          A    D  +L + P VGDI 
Sbjct: 512 TLARFIYALGIRGVGETTARMLANTFQTLE----------ALKAADVEALKKTPDVGDIT 561

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664
           A+ I +F+  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ R 
Sbjct: 562 AEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRD 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  T
Sbjct: 617 QATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQT 676

Query: 725 L 725
           L
Sbjct: 677 L 677


>gi|157144662|ref|YP_001451981.1| NAD-dependent DNA ligase LigA [Citrobacter koseri ATCC BAA-895]
 gi|166215574|sp|A8ADI2|DNLJ_CITK8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157081867|gb|ABV11545.1| hypothetical protein CKO_00382 [Citrobacter koseri ATCC BAA-895]
          Length = 671

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 253/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K  + + +  E K
Sbjct: 58  PSQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSGDKLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  + AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLISAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y++++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPEAVLDFYHKVEEDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G 
Sbjct: 292 NSMALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PVEFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVG 605
             +  RF+++LGIR VG   A  LA Y+ + +   A  I+            L +VP VG
Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIDE-----------LQKVPDVG 553

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            ++A  +  F+    N   +  LL E       I  +   + S    K +V TG+L  + 
Sbjct: 554 IVVATHVFNFFAEESNRDVIGQLLAEGIHWPAPIVVNADEIDSPFAGKTIVLTGSLSLMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669


>gi|166216290|sp|Q0AHH6|DNLJ_NITEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 683

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/715 (36%), Positives = 397/715 (55%), Gaps = 54/715 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L +L   I+ HD  YY    PII D++YD L R    +   +P L     P+ P  ++
Sbjct: 9   ERLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLIT---PDSPTQRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G        ++TH  P LSL   +  ++   F  RI    +  + + + + +EPK DG  
Sbjct: 66  GAPPLKVFARLTHQTPMLSLTNAFTEDEAIAFDKRI---REALNVDQVNYAVEPKFDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ Y  G     A RGDG++GED++  +R IP+IP R+ +  + +  EVRGEV + K D
Sbjct: 123 VSLVYTNGILTNGATRGDGYTGEDITLNLRTIPSIPLRLQTATVTDQFEVRGEVVMLKAD 182

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG--LGKTSEIFAKG 253
           F  LN++    G K +ANPRNAA+G LR+L+ ++IT  R L FF +   L    + F   
Sbjct: 183 FEHLNEQQRNKGEKLFANPRNAAAGSLRQLD-SNITAARKLTFFAYDAVLSHKDQPFFSK 241

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E+L  ++   F V           G+++YY+EM ++R +LPY+IDG+VYKVD  + Q+
Sbjct: 242 HSEILDYLKSQQFLVAQQNGTTTGVAGLLTYYHEMGALRLSLPYEIDGVVYKVDNLTQQE 301

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +R+PR+ I+HKF  ++AST LL I+IQ+GRTG LTPVARL PV +GG  +TNATL
Sbjct: 302 TLGYVSRAPRFAIAHKFPAQEASTELLTIEIQVGRTGALTPVARLAPVFVGGVTVTNATL 361

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED ++            + I +GD V+V+RAG+VIP+VV +I  +R   AQPF  P  
Sbjct: 362 HNEDEVQ-----------RKQIMIGDTVIVRRAGDVIPEVVAVIPEQRPAHAQPFIMPDH 410

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S+  R      G+ V   RCTGGL C AQ+ + + HF SR A +I+GLG++ +D 
Sbjct: 411 CPVCGSKAAR----LPGEAVT--RCTGGLYCPAQRKQAIWHFASRRALDIDGLGEKLIDQ 464

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD++ L      +   + ++    + S  NL  +I   +  +L RF
Sbjct: 465 LIDRE----LVHTPADLYKL------NIDTLASLERMAEKSARNLVTAIEHSKKTTLPRF 514

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGIRHVG   A++LA       N A  ++ ++     D   L ++P VG I+AQ+I+
Sbjct: 515 IYALGIRHVGEATAKALA-------NQASHLDQLMTL---DIEQLQQIPDVGPIVAQSII 564

Query: 614 EFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +F+    N   +  LL      E+     +  +  +S +  K  V TGTL  + R +A+ 
Sbjct: 565 DFFSEAHNREVIRQLLDSGLQWEIPNHGVQQSEQTNSAVSGKTFVLTGTLPTMTRDQAKI 624

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            + Q G  V+  +S  T  ++ G +PGSK  KA  LG+ +++E+Q L LLQ  +T
Sbjct: 625 KIEQQGGKVTGSVSSATSYVVAGSDPGSKYAKAIGLGISVLDEDQLLSLLQNIST 679


>gi|256822391|ref|YP_003146354.1| NAD-dependent DNA ligase [Kangiella koreensis DSM 16069]
 gi|256795930|gb|ACV26586.1| DNA ligase, NAD-dependent [Kangiella koreensis DSM 16069]
          Length = 667

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 259/709 (36%), Positives = 407/709 (57%), Gaps = 59/709 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  K ++ L   +  ++  YY    P + D+EYD L R    I    P+L  S+ P  
Sbjct: 1   MSELEKRVAELRVTLDNYNHQYYVLDDPSVPDAEYDRLLRELQQIESEHPELISSDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G + +    +VTH +P LSL+   + ++L  F  R+       ++  I +  EPK
Sbjct: 60  --QRVGAKPDNGFQEVTHELPMLSLDNAMSDDELVSFNKRVQDRLNTTEN--IEYVCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V  A RGDG +GE+++  +R I  IP ++     PE IE+RGEV+
Sbjct: 116 LDGLAVSLLYENGQLVRGATRGDGTTGENITLNVRTIRAIPLKLRGTETPERIEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250
           + K  F +LN+E    G K +ANPRNAA+G LR+L+P+    R L+F+ + +G  S+ F 
Sbjct: 176 MPKAVFESLNEEAREQGAKSFANPRNAAAGSLRQLDPSITAKRQLSFYAYSMGLVSDDFK 235

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A   ++ L++++  G PV++ ++      G ++Y+  +   R +L Y+IDG+V KV+  
Sbjct: 236 LANTHFDRLEQIKTFGLPVSSEIKLVKGAEGCLAYHQSISEKRDSLGYEIDGVVNKVNSI 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG  AR+PRW I+HKF  ++  T+L+ +D Q+GRTG LTPVARLEPV++GG  ++
Sbjct: 296 ELQEELGFVARAPRWAIAHKFPAQEEMTQLIGVDFQVGRTGALTPVARLEPVSVGGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D IK LDA           R+GD V+++RAG+VIP+VV II+ +R  +A+   
Sbjct: 356 NATLHNMDEIKRLDA-----------RIGDTVIIRRAGDVIPQVVSIILEKRPSNAEIIL 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C S V R          AA RCTGGL CSAQ+ E +KHF SR A +I+GLG +
Sbjct: 405 TPEQCPVCNSPVERTEGE------AAIRCTGGLICSAQRKEAIKHFASRKAMDIDGLGDK 458

Query: 490 QLDFF-----FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
            ++ F      +S    + I+   DI  L R               G+ S  NL  ++  
Sbjct: 459 LVEIFAEKGMVQSISDLYRIK-AGDIAALDR--------------MGEKSAENLIGALEH 503

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +N +L +F++SLGIR VG   A+++A ++L+       ++ II  + ++  S   VP V
Sbjct: 504 SKNTTLPKFLYSLGIREVGEVTAKNIAHHFLT-------LDGIIKASQEELES---VPDV 553

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQ 662
           G I+A  I  F+ N  N+  +E  LK++  +    +K    E  ++ K  V TGTL+ I 
Sbjct: 554 GPIVAHHIRAFFDNVENLEQIEE-LKDLGVNWPDIKKKSDDELPLKGKTYVITGTLEGIS 612

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           R +A+  +  LGA VS  +S KT  +I G + GSKL+KAQ+LGV+++++
Sbjct: 613 RPEAKAKLEALGAKVSGSVSSKTTALIAGASAGSKLKKAQELGVEVLDQ 661


>gi|326559356|gb|EGE09783.1| NAD-dependent DNA ligase [Moraxella catarrhalis 7169]
          Length = 691

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 272/712 (38%), Positives = 402/712 (56%), Gaps = 47/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+    +I  +E+RGEV 
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +        
Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   +Q +  LGF + +  + A +   I ++Y  +   RS LP++IDGLV KV++ +L
Sbjct: 254 TTQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N 
Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN          G++ R G  + VGD V V RAG+VIPKV  +I   R  DA+P   P
Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L
Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L 
Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIR VG   A SLA+ +        E+ +II     D  +L  VP +G+I AQ+
Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ +
Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|293609092|ref|ZP_06691395.1| DNA ligase [Acinetobacter sp. SH024]
 gi|292829665|gb|EFF88027.1| DNA ligase [Acinetobacter sp. SH024]
          Length = 679

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 271/721 (37%), Positives = 395/721 (54%), Gaps = 59/721 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ R+    L Q I+ H+  YY   +P I DSEYD L  +  A+   +PDL +S+ P  
Sbjct: 7   IEQMRQ----LIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSPT- 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              K+GG+       VTH +P LSL  ++N EDL  F  R+    ++  +  I + +E K
Sbjct: 62  --TKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKIQYEVELK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGE 190
           +DG  I++ YE G  +    RGDG +GED++  I+ I  +P+VL      IP ++EVRGE
Sbjct: 117 LDGLAISLWYENGVLIRGVTRGDGETGEDITQNIKTIRNLPKVLHSDHFEIPRLLEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V + K+ F  LN E  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +    
Sbjct: 177 VLMPKSGFEKLNAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPN 236

Query: 250 FA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 ++ LQ +  LGF +       N+   +   Y +++  RS L  +IDG+V KVD+
Sbjct: 237 HGLTTMHDSLQWLIKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKVDD 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG  +
Sbjct: 297 LKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+  
Sbjct: 357 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAEVV 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGLG 
Sbjct: 406 HLPENCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGD 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +  
Sbjct: 460 RWVESLLHLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASKKT 511

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIR VG   AR LA  + + +          A    D  +L + P VGDI 
Sbjct: 512 TLARFIYALGIRGVGETTARMLANTFQTLE----------ALKAADVEALKKTPDVGDIT 561

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664
           A+ I +F+  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ R 
Sbjct: 562 AEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRD 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  T
Sbjct: 617 QATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQT 676

Query: 725 L 725
           L
Sbjct: 677 L 677


>gi|254508455|ref|ZP_05120575.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16]
 gi|219548665|gb|EED25670.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16]
          Length = 669

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/711 (36%), Positives = 403/711 (56%), Gaps = 51/711 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q +++L+ L + + YH   YY    P I D+EYD L R    +    P+L   + P+  
Sbjct: 3   QQIQEKLNQLRESLHYHGIKYYVEDAPEIPDAEYDRLMRELIELEAQNPNLISVDSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI-FFTLEPK 133
             ++GG        V H IP LSL+  ++ ++L  F  R+     +   +S+  F  EPK
Sbjct: 61  -QRVGGAPLDGFTPVAHEIPMLSLDNAFDDDELNAFHKRML---DRVAGSSVEAFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++  +R I  IP ++     P  IEVRGEV+
Sbjct: 117 LDGLAVSLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLCGEGWPARIEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEI 249
           + K  F  LN+  +  G K + NPRNAA+G LR+L+ + IT  R L+F+ + +G      
Sbjct: 177 MPKAGFEKLNEHALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLSFYAYSVGVVEGAA 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            ++  YE   +++  G P+    RQ  +   + +YY ++   R  L Y+IDG+V KVD  
Sbjct: 236 LSESHYERFLQLKSWGLPMCPETRQVESLDDVKAYYKDILQRRDQLAYEIDGVVIKVDSI 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++
Sbjct: 296 ELQERLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            +++GD V+++RAG+VIP++V ++   R  DA+   
Sbjct: 356 NATLHNADEIARL-----------GVKIGDSVVIRRAGDVIPQIVSVVAERRPDDAREIV 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FPS CP+C S+V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A +++GLG +
Sbjct: 405 FPSQCPVCNSQVER----VEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLGVK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     +  PAD+F L      S   I  +   G  S  N+ D++ K +  +
Sbjct: 459 VIEQLVDRE----MVETPADLFKL------SAGIITVLDRMGPKSAQNVVDALAKAKQTT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF++SLGIR VG   A +LA ++       + ++ I A +++    LI VP +GDI+A
Sbjct: 509 LARFLYSLGIREVGEATAANLALHF-------KTLDAIKAASHE---QLIAVPDIGDIVA 558

Query: 610 QAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
             I  F+    N   ++ L+ +    P I    ++V   +  K +V TG+L ++ R+ A+
Sbjct: 559 SHITAFFAQDNNQSVIDDLIAQGICWPDIEEKGEDVPQPLAGKTVVLTGSLSQLSRNDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LGV+I  E+  + LL
Sbjct: 619 AALQNLGAKVTGSVSKKTDILFAGENAGSKLSKAQELGVEIRTEQDLIDLL 669


>gi|123441550|ref|YP_001005536.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166216254|sp|A1JLA4|DNLJ_YERE8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|122088511|emb|CAL11304.1| DNA ligase [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 672

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/711 (35%), Positives = 410/711 (57%), Gaps = 49/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  ++ P  
Sbjct: 1   MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ E    F  R++   ++ D   + F  E K
Sbjct: 60  --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAD--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           +    F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 MPLAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +   + L + +  G PV+  V+       ++++Y +++  R  L +DIDG+V KVD  
Sbjct: 236 -PRSHIQRLMQFKAWGLPVSERVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 DLQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++++R  DA+  +
Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEIT 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPEHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   + +     +  PAD+FTL      +  K+  +   G  S  NL  ++ K +  +
Sbjct: 458 IIEQLVEKQ----YVENPADLFTL------TAGKLTGLDRMGPKSAQNLIVALEKAKQTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA ++ + +N              D  +L  VP VG+++A
Sbjct: 508 FARFLYALGIREVGEATAANLAAHFRNLENL----------RAADIEALKSVPDVGEVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           + +V F     N   +EAL K ++    +    + + S    K +V TG+L  + R +A+
Sbjct: 558 KHVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 618 DRLAALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668


>gi|295688860|ref|YP_003592553.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756]
 gi|295430763|gb|ADG09935.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756]
          Length = 783

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 253/615 (41%), Positives = 364/615 (59%), Gaps = 26/615 (4%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           LIP+  L+  QA +EL  L  E++ HD  Y+Q   P I D++YDALKRR   I   FP L
Sbjct: 3   LIPVADLTEAQAVEELERLADELTRHDLAYHQQDNPTISDADYDALKRRNLDIETRFPHL 62

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R    N P  ++G         V H +P LSL+  ++ ++  +F  R+ RF +     +
Sbjct: 63  VRD---NSPSMRVGAARAEQFSPVRHGVPMLSLDNAFSNDEAEEFDARVRRFLRLSPSET 119

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184
           + +T EPKIDG   ++RYEKG  V  A RGDG +GEDV+A +R I  IP R+     P++
Sbjct: 120 LAYTAEPKIDGLSASLRYEKGVLVQGATRGDGQTGEDVTANLRTIADIPHRLKGSGWPDV 179

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           IEVRGEVY+    F A N      G++ YANPRN A+G LR+++ T    R L FF +  
Sbjct: 180 IEVRGEVYVELEAFAAFNKAAEDAGQRTYANPRNFAAGSLRQIDSTISAQRPLRFFGYAW 239

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G  SE FA GQ+E L+K+R  GF       R+     G++  Y E +++R TL +DIDG+
Sbjct: 240 GLVSEPFAGGQWEALEKLRSWGFVTTAPPARRVENAQGLLDVYAEFEALRPTLNFDIDGV 299

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKVD+  LQ++LG  +RSPRW I+ KF  ++A T L  ID+Q+GRTG +TPVARL+PV 
Sbjct: 300 VYKVDDLELQRRLGFVSRSPRWAIARKFPAQKARTLLEAIDLQVGRTGAITPVARLKPVT 359

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER- 421
           +GG ++TNATLHN D I+ LDA           R+GD V+V+RAG+VIP++V++ ++ R 
Sbjct: 360 VGGVVVTNATLHNGDEIERLDA-----------RIGDTVVVQRAGDVIPQIVEVALDARP 408

Query: 422 HPDAQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
            P  +P+ FP  CP   ++ + R++N  +G+     RCTG  AC  Q++E L+HFVSR A
Sbjct: 409 DPAPEPYVFPHECPCPLKTPLAREVN-ASGQESVVRRCTGEFACPFQRVEHLRHFVSRRA 467

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG++QL  FF   D  + I  PADIF L R ++     +    G+G+ SV NL  
Sbjct: 468 FDIEGLGEKQLQAFF---DEGW-ITEPADIFKLARDEE-KLAALREREGYGETSVANLAR 522

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII-AHNNDDWLSLI 599
            I  RR I+++R I+ LG R +G   +  LA+ +  +++  +       A   + +L L 
Sbjct: 523 GIEARRTITMDRMIYGLGARDIGETTSTVLARNFDRFEDLQEAAEKAARALPGETYLELS 582

Query: 600 RVPLVGDIIAQAIVE 614
             P VG     ++VE
Sbjct: 583 TAPGVGPKALDSLVE 597



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 76/128 (59%), Gaps = 3/128 (2%)

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENK 650
            DD+L L  +  VG + AQ++  F+    N   V  L+ E+   I   EK    + +  K
Sbjct: 656 GDDYLHLAAIDGVGPVAAQSLARFFAEDHNRQKVANLVAELD--IQPVEKPKTDTAVAGK 713

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +VFTG L+K+ R +A+     LGA V++ +S+KTD+++ G   GSKL+ A +LG+++M 
Sbjct: 714 TIVFTGALEKMTRDEAKAQAEGLGAKVASSVSKKTDLVVAGPGAGSKLKTATELGIQVMT 773

Query: 711 EEQFLFLL 718
           E+++L L+
Sbjct: 774 EDEWLALV 781


>gi|326569993|gb|EGE20040.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC1]
          Length = 691

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 272/712 (38%), Positives = 402/712 (56%), Gaps = 47/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+    +I  +E+RGEV 
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +        
Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   +Q +  LGF + +  + A +   I ++Y  +   RS LP++IDGLV KV++ +L
Sbjct: 254 TTQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N 
Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN          G++ R G  + VGD V V RAG+VIPKV  +I   R  DA+P   P
Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L
Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L 
Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIR VG   A SLA+ +        E+ +II     D  +L  VP +G+I AQ+
Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ +
Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|254247879|ref|ZP_04941200.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
 gi|124872655|gb|EAY64371.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
          Length = 691

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 261/709 (36%), Positives = 399/709 (56%), Gaps = 54/709 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L R    +    P+L     P+ P  ++GGE  
Sbjct: 20  LRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVT---PDSPTQRVGGEAA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  ED+  F  R+     K  D      + + +  E K DG 
Sbjct: 77  GGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE+G FV AA RGDG +GEDV+  +R I +IP ++   ++P +++VRGEV + K 
Sbjct: 137 AISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKG 253
           DF  LN+   A  ++ +ANPRNAA+G LR+L+ + IT  R L+FF +G+G    +     
Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMPMPDT 255

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              +L     LG PVN      +   G++ ++ ++   R +LPYDIDG+VYKV+    Q+
Sbjct: 256 HSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQE 315

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATL
Sbjct: 316 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 375

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  P+ 
Sbjct: 376 HNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTE 424

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D 
Sbjct: 425 CPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQ 478

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RF
Sbjct: 479 LVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARF 528

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIRHVG   A+ LAK++ S       +  I+  + ++   L+ V  VG I+A++I 
Sbjct: 529 IYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESIH 578

Query: 614 EFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +F+    N   +E L    K   P      K     +  K +V TGTL  + R  A+E +
Sbjct: 579 QFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEML 638

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 639 EAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|260912664|ref|ZP_05919150.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260633042|gb|EEX51207.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 673

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 266/725 (36%), Positives = 412/725 (56%), Gaps = 67/725 (9%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PI+   +EQ RK L   E +       Y+    P + D+EYD L  +   +   +P    
Sbjct: 4   PIQ-FEMEQLRKTLRRYEYQ-------YHVLDNPTVPDAEYDRLFHQLKKLEREYPQFI- 54

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSI 126
           +ED   P  ++G +      +VTH IP LSL+ +++ ++ + F+ RI  R         +
Sbjct: 55  TED--SPTQRVGAKPLSGFAQVTHEIPMLSLDNVFSDDEFKAFVKRIQDRLLVLP--KQL 110

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            F  EPK+DG  ++I Y  GK V AA RGDG +GED+++ IR I  IP ++L  N P  +
Sbjct: 111 TFCCEPKLDGLAVSILYVDGKLVQAATRGDGTTGEDITSNIRTIRNIPLQLLMDNPPGRL 170

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHG 242
           EVRGEV++ +  F ALN++ +  G K +ANPRNAA+G LR+L+P   ++    LN +  G
Sbjct: 171 EVRGEVFMPQAGFEALNEQALIKGEKTFANPRNAAAGSLRQLDPKITSQRPLVLNAYSIG 230

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           + +  E+     +E LQ ++ +G PVNN ++  +    ++ +Y  +   RS L YDIDG 
Sbjct: 231 IAEGVELPVT-HFERLQWLKSIGIPVNNEIQLCDGIENVLDFYRTIMKKRSDLGYDIDGT 289

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K++E +LQ++LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L PV 
Sbjct: 290 VLKINEIALQQELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLAPVF 349

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++NATLHN D I  L           D+ +GD V+++RAG+VIP+++ ++  +R 
Sbjct: 350 VAGVTVSNATLHNGDEIARL-----------DVAIGDTVIIRRAGDVIPQIIGVVHEKRP 398

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            DA+   FPS CP+C S +VR      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +
Sbjct: 399 ADAKKIEFPSNCPVCDSIIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMD 452

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+G+G + ++     E     I  PAD+F L     T+  ++E +   G  S  N  DS+
Sbjct: 453 IDGVGAKLIEQLVDRE----QIHTPADLFKLDL---TTLMRLERM---GPKSAQNALDSL 502

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +  +L RFIF+LGIR VG   A +LA Y+            + A        L +V 
Sbjct: 503 EKAKKTTLARFIFALGIREVGEATALNLANYF----------KTLTALKEATLEQLQQVQ 552

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS------SEIENKKLVFTG 656
            VG+++A  I  F++ P N+  V+ LL +     G H   V       +  + K +V TG
Sbjct: 553 DVGEVVANRIFVFWREPHNVEVVDDLLAQ-----GIHWDAVEITEANDNPFKEKTIVLTG 607

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL ++ R +A+  + +LGA VS  +S KTD++I G++ GSKL KA +L V++++E+ FL 
Sbjct: 608 TLTQMGRTEAKALLQRLGAKVSGSVSAKTDLVIAGESAGSKLTKANELNVQVIDEQTFLD 667

Query: 717 LLQQY 721
             + Y
Sbjct: 668 WSEPY 672


>gi|323143662|ref|ZP_08078336.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066]
 gi|322416595|gb|EFY07255.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066]
          Length = 696

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 259/714 (36%), Positives = 406/714 (56%), Gaps = 63/714 (8%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    PI+ DSEYD L R+ + +  A P +     P+ P  ++GG+   +   VTH +
Sbjct: 21  AYYVDDDPIVTDSEYDRLYRQLEIMEQADPTII---SPDSPTRRVGGQALSAFASVTHRV 77

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL  I+++ +L  F  RI  F  ++    + +  EPK+DG  +++ YE G  V AA 
Sbjct: 78  PLLSLGDIFSVSELNDFNERICDFTHEE---KVEYCAEPKLDGLAVSLIYENGLLVKAAT 134

Query: 154 RGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDG  GED++   + I  IP R+   N+P  ++VRGEV++ ++ F   N+     G K 
Sbjct: 135 RGDGRVGEDITENAKTIKAIPLRLSGENVPSYLDVRGEVFMPRDGFEKWNERARQNGGKV 194

Query: 213 YANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
           +ANPRNAA+G LR+L+ + IT  R L F  + +G+ S      QY+ L  ++  G PVN 
Sbjct: 195 FANPRNAAAGSLRQLD-SKITAKRPLTFNAYYIGECSNELPDTQYDRLMSVKGWGIPVNP 253

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
            +++     G+  +YN++   R  L YDIDG+V KV+   +Q+ +G  AR+PRW I++KF
Sbjct: 254 LIKKVYGIKGLSDFYNDILQKRPGLNYDIDGVVLKVNSIPVQEDMGFTARTPRWAIAYKF 313

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
             ++  TRLLD++ Q+GRTG +TPVARL+PV +GGA ++NATLHNED I+ L        
Sbjct: 314 PPEEEITRLLDVEFQVGRTGAVTPVARLDPVYVGGATVSNATLHNEDEIRRL-------- 365

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCPICQSRVVRDLNPKT 449
              ++ +GD V+V+RAG+VIP+V  +++  R  D  +P  FP+ CP C S + R      
Sbjct: 366 ---NLMIGDYVIVRRAGDVIPQVAGVVLERREKDKVKPIVFPTECPECGSLIER----VK 418

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
           G+ VA  RC+GGL C AQ  E + HFVSR+A +IEG G + ++    S      ++  AD
Sbjct: 419 GEAVA--RCSGGLVCPAQLRESVLHFVSRNAMDIEGFGDRIVEQLVLSG----KVKSIAD 472

Query: 510 IFTLQRRQQTSTT-------KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
           +++L      S         +   +LG   ++   L  +I K R I+L RFI++LGIR V
Sbjct: 473 LYSLGENDLASLVLDDGSPERKPRLLGM--ITAKKLKAAIEKSRTIALNRFIYALGIREV 530

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   A +LA ++       + +N+I+  + +D   L+++P +G ++A  I +F++ P N+
Sbjct: 531 GESTALTLATHF-------ETLNDIMRASVED---LMKLPDIGVVVANHIYDFFKEPHNL 580

Query: 623 CAVEALLKEVSPSI------------GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
             +E L+      +               +   S  +  +  V TGTL  + R+KA+  +
Sbjct: 581 DIIERLVPSADIPLFSAGLTLLPCAQASVQTAQSMPLMGQTYVLTGTLSIMDRNKAKNLL 640

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             LGA VS  +S+KT  +I G +PGSKL KAQ+LGVK+M E+ F+ LL+++  +
Sbjct: 641 QSLGAKVSGSVSKKTYAVIAGADPGSKLVKAQELGVKVMTEDDFIALLKEHGLS 694


>gi|170733380|ref|YP_001765327.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
 gi|254781274|sp|B1JUF5|DNLJ_BURCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169816622|gb|ACA91205.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
          Length = 691

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/709 (36%), Positives = 399/709 (56%), Gaps = 54/709 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L R    +    P+L     P+ P  ++GGE  
Sbjct: 20  LRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVT---PDSPTQRVGGEAA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  ED+  F  R+     K  D      + + +  E K DG 
Sbjct: 77  GGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE+G FV AA RGDG +GEDV+  +R I +IP ++   ++P +++VRGEV + K 
Sbjct: 137 AISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKG 253
           DF  LN+   A  ++ +ANPRNAA+G LR+L+ + IT  R L+FF +G+G    +     
Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMPMPDT 255

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              +L     LG PVN      +   G++ ++ ++   R +LPYDIDG+VYKV+    Q+
Sbjct: 256 HSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQE 315

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATL
Sbjct: 316 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 375

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  P+ 
Sbjct: 376 HNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTE 424

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D 
Sbjct: 425 CPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQ 478

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RF
Sbjct: 479 LVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTTLARF 528

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIRHVG   A+ LAK++ S       +  I+  + ++   L+ V  VG I+A+++ 
Sbjct: 529 IYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESLH 578

Query: 614 EFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +F+    N   +E L    K   P      K     +  K +V TGTL  + R  A+E +
Sbjct: 579 QFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEML 638

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 639 EAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|326570074|gb|EGE20120.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC7]
          Length = 691

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 272/712 (38%), Positives = 401/712 (56%), Gaps = 47/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+    +I  +E+RGEV 
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +        
Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +L
Sbjct: 254 TTQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N 
Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN          G++ R G  + VGD V V RAG+VIPKV  +I   R  DA+P   P
Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L
Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L 
Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIR VG   A SLA+ +        E+ +II     D  +L  VP +G+I AQ+
Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ +
Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|308050127|ref|YP_003913693.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799]
 gi|307632317|gb|ADN76619.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799]
          Length = 685

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 254/719 (35%), Positives = 397/719 (55%), Gaps = 54/719 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + QA+  +  L Q ++ ++  YY    P + D+EYD L R   A+    P L     P+ 
Sbjct: 10  MSQAKDRIEQLSQLLNDYNHQYYVLDNPSVPDAEYDRLMRELQALEAEHPAL---RQPDS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H  P LSL+   N E+   F  R+       D   I +  EPK
Sbjct: 67  PTQRVGGAPAGQFQSVAHLKPMLSLDNAMNEEEFSAFHQRLADRLGSGD---IQYCAEPK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ Y  G    AA RGDG +GE+++  +R I ++P R+     P ++EVRGE +
Sbjct: 124 LDGIAVSLIYRDGLLERAATRGDGTTGEEITTNVRTIKSVPLRLSGKGYPALLEVRGEAF 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI- 249
           + K  F A+N + +A G K + NPRNAA+G LR+L+ + IT  R L F+ + +G    I 
Sbjct: 184 MPKAGFEAMNAKAMAAGEKTFVNPRNAAAGSLRQLD-SRITANRPLAFYAYAVGVVEGID 242

Query: 250 --FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A      L ++   G PV+  V  A      + Y+  +   R  LPY+IDG+V KVD
Sbjct: 243 TAMADSHSGQLAQLAQWGLPVSPIVETAAGEAAALDYFRRIGQQRPDLPYEIDGVVIKVD 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             + Q+QLG  AR+PRW I+ KF  ++  T L D++ Q+GRTG +TPVARLEPV +GG  
Sbjct: 303 SLAQQEQLGFVARAPRWAIACKFPAQEEMTLLKDVEFQVGRTGAVTPVARLEPVFVGGVT 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I  L            +++GD V+++RAG+VIP++V ++   R  DA+ 
Sbjct: 363 VSNATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVSVVAERRPDDARD 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FPS CP+C S+V R      G+ VA  RC+GGL C AQ+ E +KHF SR A +++GLG
Sbjct: 412 IEFPSACPVCASKVER----FEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDVDGLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     +  PAD+FTL      S +++  +   G  S  NL  ++++ R 
Sbjct: 466 DKLVELMVDRE----LVATPADLFTL------SASRLTMLPRMGTKSAQNLVAALDQART 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF+++LGIR VG   A +LA+++       Q +  ++A + D   +LI V  VG++
Sbjct: 516 TTLPRFLYALGIREVGEATAANLARHF-------QTLEALMAADTD---ALIEVDDVGEV 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQR 663
           +A+ +  F++ P N+  ++AL      ++        +E    ++ +  V TGTL ++ R
Sbjct: 566 VAKHVYYFFRQPHNLEVIQALTDTEGANVHWPAIEAVAEEAQPLKGQTWVLTGTLSQMGR 625

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A+  +  LGA VS  +S+ TD ++ G+  GSKL KA  LGV +++E+  + LL QYN
Sbjct: 626 SEAKAALEALGAKVSGSVSKNTDTLVAGEKAGSKLTKATDLGVPVLDEDGLVALLAQYN 684


>gi|124302218|gb|ABN05294.1| DNA ligase [Geobacillus sp. g]
          Length = 670

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 262/708 (37%), Positives = 399/708 (56%), Gaps = 56/708 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA +  + L + +  +   YY   +P + D+EYD L +   AI   +P+L  S+ P   
Sbjct: 4   QQAERRAAELRELLHRYGYEYYVLGRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPT-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +IGG    +  KVTH +P +SL   ++  DLR F  R+     +++     +  E KI
Sbjct: 62  -QRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRV-----RQEVGEAAYVCELKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  +R I ++P  L L  P  +E RGE ++ 
Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLP--LRLKEPVSLEARGEAFMP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL    E+  + 
Sbjct: 174 KASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIES 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  ++ LGF VN   R+      ++++ NE    R  LPY+IDG+V KVD F+ Q+
Sbjct: 234 HSEALDYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQR 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  ATL
Sbjct: 294 ELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF  P+ 
Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTH 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +VR L+ +      A RC     C AQ  ERL HF SR A NIEGLG++ +  
Sbjct: 403 CPECESELVR-LDGEV-----ALRCLNP-KCPAQLRERLIHFASRAAMNIEGLGEKVVTQ 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F     A  +   AD++ L + Q     ++      G+ S TNL  +I   +  SLER 
Sbjct: 456 LFN----AGLVHDVADLYRLTKEQLIGLERM------GEKSATNLLAAIEASKQNSLERL 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR+VGA+ A+ LA+++ + +   +               L+ VP +G+ +A +I+
Sbjct: 506 LFGLGIRYVGAKAAQLLAEHFETMERLEKATKE----------ELMAVPEIGEKMAGSII 555

Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            F+  P     +  L      +    P     E    S    K +V TG L  + R++A+
Sbjct: 556 AFFSQPEAAELLHELRLYGVNMAYKGPKRA-AEAPADSAFAGKTVVLTGKLASMSRNEAK 614

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           E + +LG  V+  +SR TDI+I G++ GSKLEKAQQLG++I +E +FL
Sbjct: 615 EEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFL 662


>gi|258514074|ref|YP_003190296.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771]
 gi|257777779|gb|ACV61673.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771]
          Length = 677

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 257/709 (36%), Positives = 403/709 (56%), Gaps = 55/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +++A K +  L +EI  H+  YY    P+I D+EYD L     A+   FPDL     P
Sbjct: 1   MELKEAGKRVLELRREIEEHNYNYYVMDNPVIGDAEYDRLMLELTALEQQFPDLLSEHSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++GG+       VTH +P LSL   ++ ++L+ F  R+      ++ N   + +E
Sbjct: 61  T---QRVGGKPKEGFTTVTHRVPMLSLANSFSEQELKDFDRRVRGALAGEEVN---YVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE G F   A RGDG +GED++  ++ I ++   L   +P ++EVRGEV
Sbjct: 115 LKIDGLAVSLFYENGLFQRGATRGDGETGEDITENLKTIRSLSLQLKEAVP-VLEVRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+S   F  LN    A  +  +ANPRNAA+G LR+L+P    +R L+ F++ +G    + 
Sbjct: 174 YMSGEAFRRLNKSREAEDQPLFANPRNAAAGSLRQLDPRITSSRQLSAFIYAVGYYEGVS 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             G  E L+ ++ LGFPV+   R+      +++Y  + ++ R  LP+ IDGLV KVD   
Sbjct: 234 LSGHEEALRYLQDLGFPVSRYYRKFADIEEVLAYCRDWEARRFELPFAIDGLVIKVDSLE 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I++KF  +QA T++ DI I +GRTG+LTP A L+PV + G+ ++ 
Sbjct: 294 QQLKLGATAKSPRWSIAYKFPPEQAVTKVKDIIINVGRTGVLTPTALLDPVRLAGSTVSR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED IK            +D+++GD V+V++AGE+IP+VV ++  +R     PF  
Sbjct: 354 ATLHNEDIIK-----------EKDVQIGDTVVVQKAGEIIPEVVRVLSEKRSGGEIPFKM 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG--- 487
           P +CP C ++VVR          AA RCT G+AC +Q  E L HFVSR A +I GLG   
Sbjct: 403 PQYCPDCGAKVVRLEGE------AASRCT-GMACPSQLREGLIHFVSRGAMDIAGLGPAV 455

Query: 488 -KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
             Q LD           I   AD++ L+         + N+  FG  SV NL  ++ + +
Sbjct: 456 ITQLLDTGL--------IHDAADLYNLRYED------LVNLERFGQKSVQNLLQALEQSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SL R IF+LGIRHVG   A++LA+++ S Q       N++A   ++   L+ +P +G 
Sbjct: 502 KASLGRLIFALGIRHVGERAAKTLARHFGSLQ-------NLMAAGLEE---LVGIPEIGT 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHK 665
            IA +I+ F++  +N+  V+ L++     + +  E + +  +E K  V TGTL+   R  
Sbjct: 552 KIAGSIITFFEQEQNLSVVDKLVRAGVNIVEKDTEASTAGSLEGKTFVLTGTLRSFTRET 611

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           A++++  LG  V+A +S+ TD ++ G+NPGSK +KA +LG+K+++E  F
Sbjct: 612 AKQFIEGLGGKVTASVSKSTDYVLAGENPGSKYDKAVKLGIKVIDEAYF 660


>gi|332089820|gb|EGI94921.1| DNA ligase, NAD-dependent [Shigella dysenteriae 155-74]
          Length = 671

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 411/712 (57%), Gaps = 50/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P+    R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPSITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VKGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             +  F+    N   +  LL E    S  I  + + + S    K +V TG+L ++ R  A
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 618 KARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|297528690|ref|YP_003669965.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
 gi|297251942|gb|ADI25388.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
          Length = 670

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 263/708 (37%), Positives = 399/708 (56%), Gaps = 56/708 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA +  + L + +  +   YY   +P + D+EYD L +   AI   +P+L  S+ P   
Sbjct: 4   QQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPT-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +IGG    +  KVTH IP +SL   ++  DLR F  RI     +++     +  E KI
Sbjct: 62  -QRIGGPPLEAFRKVTHRIPMMSLANAFDEGDLRDFDRRI-----RQEVGEAAYVCELKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L L  P  +E RGE ++ 
Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLKEPVSLEARGEAFMP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL    E+  + 
Sbjct: 174 KASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIES 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  ++ LGF VN   R+      ++++ NE    R  LPY+IDG+V KVD F+ Q+
Sbjct: 234 HSEALDYLQALGFKVNPERRRCANIDEVIAFINEWHEKRPQLPYEIDGIVIKVDSFAQQR 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  ATL
Sbjct: 294 ELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF  P+ 
Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTH 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +VR L+ +      A RC     C AQ  ERL HF SR A NIEGLG++ +  
Sbjct: 403 CPECESELVR-LDGEV-----ALRCLNP-KCPAQLRERLIHFASRAAMNIEGLGEKVVTQ 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F     A  +   AD++ L + Q     ++      G+ S TNL  +I   +  SLER 
Sbjct: 456 LFN----AGLVHDVADLYRLTKEQLIGLERM------GEKSATNLLAAIEASKQNSLERL 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR+VGA+ A+ LA+++ + +   +               L+ VP +G+ +A +I+
Sbjct: 506 LFGLGIRYVGAKAAQLLAEHFETMERLEKATKE----------ELMAVPEIGEKMADSII 555

Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            F+  P     +  L      +    P     E    S    K +V TG L  + R++A+
Sbjct: 556 AFFSQPEAAELLHELRLYGVNMAYKGPKRA-AEAPADSAFAGKTVVLTGKLASMSRNEAK 614

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           E + +LG  V+  +SR TDI+I G++ GSKLEKAQQLG++I +E +FL
Sbjct: 615 EEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFL 662


>gi|296158912|ref|ZP_06841740.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
 gi|295890787|gb|EFG70577.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
          Length = 688

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 262/725 (36%), Positives = 401/725 (55%), Gaps = 57/725 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+   +     +  + L  E+   +  YY   +P + D+EYD L +  ++I    PDL  
Sbjct: 5   PVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLIV 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-- 125
              P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K       
Sbjct: 65  ---PDSPTQRVGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPPV 121

Query: 126 -IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPE 183
            + +  E K DG  I++RY  G FV A+ RGDG +GE+V+  +R I +IP R+    +P+
Sbjct: 122 PVEYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVPQ 181

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVH 241
           +++VRGEV + K DF  LN+   A  +K +ANPRNAA+G LR+L+ + IT  R L+FF +
Sbjct: 182 VLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLD-SKITAQRPLSFFSY 240

Query: 242 GLGKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G+G    +     + E+L   + LG PVN      +   G++ +++ +   R  LPYDID
Sbjct: 241 GIGVLEGMDMPATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDID 300

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKV+    Q+ LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG +TPVARLEP
Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEP 360

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ 
Sbjct: 361 VFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSALLDR 409

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+ F  P+ CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A
Sbjct: 410 RPDDAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRA 463

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GLG++ +D   +       +R PAD+F L          +  +  F + S  NL D
Sbjct: 464 LDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLD 513

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ K ++ +L RFI++LGIRHVG   A+ LAK++ S     +     +   ND       
Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMEASVEALLEVND------- 566

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVF 654
              VG ++A++I +F+    N   +E L           P   R  + V   +  K +V 
Sbjct: 567 ---VGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGV---LAGKTVVL 620

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL  + R +A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+  
Sbjct: 621 TGTLPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGM 680

Query: 715 LFLLQ 719
             LL+
Sbjct: 681 RKLLE 685


>gi|114330949|ref|YP_747171.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91]
 gi|114307963|gb|ABI59206.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91]
          Length = 715

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/715 (36%), Positives = 397/715 (55%), Gaps = 54/715 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L +L   I+ HD  YY    PII D++YD L R    +   +P L     P+ P  ++
Sbjct: 41  ERLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLIT---PDSPTQRV 97

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G        ++TH  P LSL   +  ++   F  RI    +  + + + + +EPK DG  
Sbjct: 98  GAPPLKVFARLTHQTPMLSLTNAFTEDEAIAFDKRI---REALNVDQVNYAVEPKFDGLA 154

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ Y  G     A RGDG++GED++  +R IP+IP R+ +  + +  EVRGEV + K D
Sbjct: 155 VSLVYTNGILTNGATRGDGYTGEDITLNLRTIPSIPLRLQTATVTDQFEVRGEVVMLKAD 214

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG--LGKTSEIFAKG 253
           F  LN++    G K +ANPRNAA+G LR+L+ ++IT  R L FF +   L    + F   
Sbjct: 215 FEHLNEQQRNKGEKLFANPRNAAAGSLRQLD-SNITAARKLTFFAYDAVLSHKDQPFFSK 273

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E+L  ++   F V           G+++YY+EM ++R +LPY+IDG+VYKVD  + Q+
Sbjct: 274 HSEILDYLKSQQFLVAQQNGTTTGVAGLLTYYHEMGALRLSLPYEIDGVVYKVDNLTQQE 333

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +R+PR+ I+HKF  ++AST LL I+IQ+GRTG LTPVARL PV +GG  +TNATL
Sbjct: 334 TLGYVSRAPRFAIAHKFPAQEASTELLTIEIQVGRTGALTPVARLAPVFVGGVTVTNATL 393

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED ++            + I +GD V+V+RAG+VIP+VV +I  +R   AQPF  P  
Sbjct: 394 HNEDEVQ-----------RKQIMIGDTVIVRRAGDVIPEVVAVIPEQRPAHAQPFIMPDH 442

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S+  R      G+ V   RCTGGL C AQ+ + + HF SR A +I+GLG++ +D 
Sbjct: 443 CPVCGSKAAR----LPGEAVT--RCTGGLYCPAQRKQAIWHFASRRALDIDGLGEKLIDQ 496

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD++ L      +   + ++    + S  NL  +I   +  +L RF
Sbjct: 497 LIDRE----LVHTPADLYKL------NIDTLASLERMAEKSARNLVTAIEHSKKTTLPRF 546

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGIRHVG   A++LA       N A  ++ ++     D   L ++P VG I+AQ+I+
Sbjct: 547 IYALGIRHVGEATAKALA-------NQASHLDQLMTL---DIEQLQQIPDVGPIVAQSII 596

Query: 614 EFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +F+    N   +  LL      E+     +  +  +S +  K  V TGTL  + R +A+ 
Sbjct: 597 DFFSEAHNREVIRQLLDSGLQWEIPNHGVQQSEQTNSAVSGKTFVLTGTLPTMTRDQAKI 656

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            + Q G  V+  +S  T  ++ G +PGSK  KA  LG+ +++E+Q L LLQ  +T
Sbjct: 657 KIEQQGGKVTGSVSSATSYVVAGSDPGSKYAKAIGLGISVLDEDQLLSLLQNIST 711


>gi|326562480|gb|EGE12798.1| NAD-dependent DNA ligase [Moraxella catarrhalis 46P47B1]
 gi|326567201|gb|EGE17321.1| NAD-dependent DNA ligase [Moraxella catarrhalis 12P80B1]
 gi|326568292|gb|EGE18374.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC8]
          Length = 691

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 272/712 (38%), Positives = 401/712 (56%), Gaps = 47/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMCALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+    +I  +E+RGEV 
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +        
Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +L
Sbjct: 254 TTQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N 
Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN          G++ R G  + VGD V V RAG+VIPKV  +I   R  DA+P   P
Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L
Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L 
Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIR VG   A SLA+ +        E+ +II     D  +L  VP +G+I AQ+
Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ +
Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|71082725|ref|YP_265444.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123775550|sp|Q4FPL3|DNLJ_PELUB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71061838|gb|AAZ20841.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 676

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 259/699 (37%), Positives = 404/699 (57%), Gaps = 53/699 (7%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           H+  YY  +KPI+ D E+D LK+    +   +  L +SE    P   IG + + +  K+ 
Sbjct: 20  HNKHYYDKNKPIVSDQEFDLLKKDIIDLERKYKFL-KSE--YSPTKSIGFKPSKNFQKIK 76

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H +P LSL   +N EDL+ F  +I  F   KD N+I ++ EPKIDG   ++ Y  GK   
Sbjct: 77  HKVPMLSLGNAFNEEDLKNFEKKIINFLSLKDVNTIEYSAEPKIDGISASLIYIDGKLTK 136

Query: 151 AALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
              RGDG+ GED++  ++ I  IP  +   N P+ I++RGEV+I  NDF  + D+     
Sbjct: 137 GLSRGDGNEGEDITQNLKTIKDIPLEITKSNFPKEIDIRGEVFIENNDFKKIKDK----- 191

Query: 210 RKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
              +ANPRNAASG LR+ N     +  L F  +  G   ++  K Q   L+ ++  GF  
Sbjct: 192 ---FANPRNAASGSLRQKNSLITAKIPLKFIAYTYGYEKKMNIKNQTSFLENLKLWGFKT 248

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
           N   ++      ++  + E++  R  L +DIDG+VYKV++F LQK+LG  A +PRW I+H
Sbjct: 249 NPFNKKIIGVKNLMLNHKELEEKRKELAFDIDGIVYKVNDFDLQKRLGFAANAPRWAIAH 308

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           KF+   + + +++I+IQIGRTG LTPVA+++PVNIGG +++NATLHNED         ++
Sbjct: 309 KFSANSSISEIMNIEIQIGRTGALTPVAKIKPVNIGGVIVSNATLHNED---------EI 359

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
           +R  +DIRVGD V V+RAG+VIP VV + + +R  +++ F FP  CP C S+ ++D N  
Sbjct: 360 VR--KDIRVGDTVTVERAGDVIPHVVSVDLKKRKQNSKKFIFPLKCPSCGSKTIKDYNET 417

Query: 449 TGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
           T +  A  RC   G  C    +ER+KHFVS+DAFNI+G GK+ ++ F+  +     +R+P
Sbjct: 418 TKRQDAVRRCASEGFECEKIAIERIKHFVSKDAFNIDGFGKKIVENFWNLK----LVRLP 473

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
            DIF L      +  KIE + G+G +SV NL  SI +++NISLERFI+SLGIRH+G E A
Sbjct: 474 QDIFKL------NYNKIEELEGWGKLSVANLRFSIEEKKNISLERFIYSLGIRHIGQENA 527

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + +A++  +  NF +    +    N +  SL  +  +G    Q+I +F+ N  N+  +  
Sbjct: 528 KLIARHLKTASNFFR----LSGEKNIE--SLSNIDGIGITQIQSIKKFFLNKTNLKVLSE 581

Query: 628 -----LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
                L+K+V         N +  ++NK  + TG L  I R +A+  + Q    + + ++
Sbjct: 582 LEKNLLIKDVILI------NNNGLLKNKTFMLTGKLNGISRAEAKSLIEQNSGKIISNVN 635

Query: 683 RKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +K D +I GD P   K+  A++  +KI+N+ ++L +L +
Sbjct: 636 KKLDYLIAGDKPTLKKINTAKEWNIKIINQTEWLKMLNK 674


>gi|89256066|ref|YP_513428.1| DNA ligase [Francisella tularensis subsp. holarctica LVS]
 gi|167009870|ref|ZP_02274801.1| DNA ligase [Francisella tularensis subsp. holarctica FSC200]
 gi|254367402|ref|ZP_04983428.1| DNA ligase [Francisella tularensis subsp. holarctica 257]
 gi|123401612|sp|Q2A4C4|DNLJ_FRATH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89143897|emb|CAJ79115.1| DNA ligase [Francisella tularensis subsp. holarctica LVS]
 gi|134253218|gb|EBA52312.1| DNA ligase [Francisella tularensis subsp. holarctica 257]
          Length = 678

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 268/728 (36%), Positives = 410/728 (56%), Gaps = 65/728 (8%)

Query: 6   LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + P E  SI+    A+ EL +    L   +S     Y+   KPII DS+YD L R    +
Sbjct: 1   MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +  P     +  N  L+++GGE+      + H     SL  ++++E+LR F  +I    
Sbjct: 61  VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
               +  I    EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L+
Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169

Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
             N PE +EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L
Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229

Query: 237 NFFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
             + +G+G  S+  ++ + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ 
Sbjct: 230 KLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDGLV+KV+   LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TP
Sbjct: 290 LAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG +++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV
Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVV 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R  DAQ    P+ CP+C S+ + ++N +     A +RCTGG  C AQ  ERLKH
Sbjct: 399 KSLPQYRKSDAQIVEMPTNCPVCDSK-IENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I+ LG + ++        A  I+ PADI+ L   Q T   ++         S
Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFEQLTGLERM------AAKS 502

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N+ DSI K +  SL RFIF++GI+ +G   + +LA ++ S ++F           +  
Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDALANHFGSLESF----------RDAK 552

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650
           +  LI +  +G+IIA  IV F+ +  NI  VE  L    K  +P    H  N S     K
Sbjct: 553 FEELIEINYIGEIIANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNES--FTGK 610

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+ +   R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ 
Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670

Query: 711 EEQFLFLL 718
           E+    LL
Sbjct: 671 EDNLKDLL 678


>gi|254489942|ref|ZP_05103137.1| DNA ligase, NAD-dependent [Methylophaga thiooxidans DMS010]
 gi|224465027|gb|EEF81281.1| DNA ligase, NAD-dependent [Methylophaga thiooxydans DMS010]
          Length = 673

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/709 (36%), Positives = 404/709 (56%), Gaps = 47/709 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++  ++L + I++++  YY    P + D+EYD L      +    P+L  ++ P    
Sbjct: 6   EVQQRAATLRELINHYNYLYYVTDNPEVPDAEYDRLFSELQQLEQTHPELLTADSPT--- 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE+     ++ H++P LSL+ +++ E L  F  R+ R W   D   I+   EPK+D
Sbjct: 63  QRVGGEVLDKFAEIEHAMPMLSLDNVFDQEALTAFDKRV-RDWLNTDQPQIY-AAEPKLD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           G  I+IRYE+G  V AA RGDG+ GEDV+A +R I ++P  LS  NIP I+EVRGE+++ 
Sbjct: 121 GLAISIRYEQGVLVQAATRGDGNYGEDVTANVRTIKSVPLKLSGDNIPAIVEVRGEIFMP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K+ F  LN   +   +K + NPRNAA+G LR+L+     TR L  + +G+G         
Sbjct: 181 KDGFERLNQSQLDNNKKVFVNPRNAAAGSLRQLDSKITATRPLEIYCYGIGYIEGAARPA 240

Query: 254 QY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            + E +  +   G  ++  +++         Y  ++   R +L YDIDG+V KVD  +LQ
Sbjct: 241 SHTEAMSMIANWGCRISPELKKLEGLEACHRYIEQLGERRDSLAYDIDGVVLKVDNTALQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I++KF  ++  T + DI+IQ+GRTG LTPVARL+PV +GG  ++NAT
Sbjct: 301 ERLGFVSRAPRWAIAYKFPAQEEMTTIEDIEIQVGRTGALTPVARLKPVFVGGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I+            +D+R+GD+V+V+RAG+VIP+VV +I+++R    + F  P+
Sbjct: 361 LHNEDEIR-----------RKDVRIGDQVIVRRAGDVIPEVVKVILSKRTDTVREFVMPT 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S V R+         A  RC+GGL C AQ+ E +KHF SR A +++GLG + ++
Sbjct: 410 QCPVCGSDVEREAGE------AVSRCSGGLFCPAQRKEAIKHFASRKALDVDGLGDKLVE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               +E     I+  AD+F L   Q     ++      G  S  NL  +I   +     R
Sbjct: 464 QMVDAE----LIKDAADLFVLTVEQLAGLERM------GQKSADNLVRAIKASKQTRFPR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG   ARSLA ++           ++ A    D  +L+ +  VG I+A  I
Sbjct: 514 FLYALGIREVGEATARSLAMHF----------ADLDALKAADSEALVEIEDVGPIVAHHI 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F+Q P N+  +  L+ +V  S  + EK+ S S +  K +V TGTL ++ R +A+E + 
Sbjct: 564 ETFFQQPHNLEVINRLI-DVGVSWPQEEKSHSDSALSGKTIVLTGTLVQMSRSEAKEKLL 622

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA V+  +S+KTD ++ G + GSKL KA  L + +++E   L  L+Q
Sbjct: 623 ALGAKVAGSVSKKTDYVVAGADAGSKLTKAASLDISVVDEAMLLEWLKQ 671


>gi|332088205|gb|EGI93327.1| DNA ligase, NAD-dependent [Shigella boydii 5216-82]
          Length = 671

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 410/712 (57%), Gaps = 50/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +S+ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLKRMGPKSAQNVVNSLEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             +  F+    N   +  LL E    S  I  + + + S    K +V TG+L ++ R  A
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 618 KARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|114047080|ref|YP_737630.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
 gi|113888522|gb|ABI42573.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
          Length = 690

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/717 (35%), Positives = 407/717 (56%), Gaps = 55/717 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++ + A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    ++
Sbjct: 18  QAVTPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAAD 77

Query: 70  DPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P     ++GG M L+ F ++TH  P LSL+  ++  D   F  R+           + F
Sbjct: 78  SPT---QRVGG-MALAKFEQITHLKPMLSLDNAFDEADFSAFHKRV-----SDRVGEVSF 128

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187
             EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP ++   N PE++EV
Sbjct: 129 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEV 188

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244
           RGE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG  
Sbjct: 189 RGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 248

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             TS   AK  YE LQ+++  G PV++ ++  +    + +YY ++ + R+ LP++IDG+V
Sbjct: 249 EPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVV 308

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +
Sbjct: 309 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 368

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  
Sbjct: 369 GGVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPE 417

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+  +FP  CP+C S V R      G+ V   RC+GGL C AQ+ E +KHF SR A +I
Sbjct: 418 DAKAIAFPQHCPVCGSLVER----LEGEAVT--RCSGGLFCEAQRKEAIKHFASRKALDI 471

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I 
Sbjct: 472 DGMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAQAIE 521

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIR VG   A +LA ++ S +  A  +  I          LI+V  
Sbjct: 522 AAKTTTLPRFLYALGIREVGEATAANLATHFGSLE--ALRVATI--------EQLIQVED 571

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           +G+++AQ +  F+  P N+  ++AL+      P+I     +    ++ +  V TGTL ++
Sbjct: 572 IGEVVAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSAD-EQPLKGQTWVLTGTLNQL 630

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL
Sbjct: 631 NRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 687


>gi|149192011|ref|ZP_01870239.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1]
 gi|148834147|gb|EDL51156.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1]
          Length = 667

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 263/713 (36%), Positives = 409/713 (57%), Gaps = 59/713 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           +++ L+ L++++ YH   YY    P I D EYD L +   AI    PD    + P+    
Sbjct: 2   SQQRLNELKEQLHYHGVKYYVEDSPEIPDVEYDRLMQELLAIEAEHPDWVTVDSPS---Q 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    S  +V H IP LSL+  ++ EDL  F  RI     + D  +  +  E K+DG
Sbjct: 59  RVGGLPLDSFTQVKHEIPMLSLDNAFSDEDLDSFNKRICDRVNRTDIGA--YCCEVKLDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             +++ YE G  V AA RGDG +GE+++  +R I  IP ++   +IP  IEVRGEV++ K
Sbjct: 117 LAVSLLYESGVLVQAATRGDGTTGENITENVRTISAIPLKLQGDDIPARIEVRGEVFMPK 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAK 252
             F  LN+     G K + NPRNAA+G LR+L+     TR L+F+ + LG  + +E+ A 
Sbjct: 177 AGFAKLNELAERKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSLGIVEGTELPAS 236

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++   K++ LGFP+    ++ N+   + +Y+  ++  R  L Y+IDG+V KVD+ +LQ
Sbjct: 237 -HFDRFLKLKSLGFPMGPETKRVNSIEEVKAYHKAIQEKRDELEYEIDGVVIKVDDIALQ 295

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  AR+PRW I++KF  ++  T L  ++ Q+GRTG +TPVA+LEPV +GG  ++NAT
Sbjct: 296 EQLGFVARAPRWAIAYKFPAQEEITVLNSVEFQVGRTGAITPVAKLEPVFVGGVTVSNAT 355

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L            ++VGD V+++RAG+VIP++V  +   R  DA+   FPS
Sbjct: 356 LHNADEIERL-----------GVKVGDSVIIRRAGDVIPQIVSYVPERRPADAKEIVFPS 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S + R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++GLG++ ++
Sbjct: 405 ECPVCASLIER----IEGEAVA--RCTGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIE 458

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     +  PAD+F L   Q T   ++      G  S  N+ +++N  +  +L R
Sbjct: 459 QLVDKE----MVETPADLFKLSVGQLTILERM------GPKSAQNVVNALNVSKETTLAR 508

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F++SLGIR VG   A +L+ ++       + + N++   +D    LI VP VG+I+A+ I
Sbjct: 509 FLYSLGIREVGEATAANLSTHF-------ETLENVMNATHD---QLIEVPDVGEIVAKHI 558

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-------KKLVFTGTLQKIQRHK 665
             F+    N   +EAL+     + G H   V +  E+       K +V TG+L ++ R+ 
Sbjct: 559 RFFFAAESNQKVIEALI-----AAGIHWAAVEAPAEDTPQPLAGKTVVLTGSLSQLNRND 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  +  LGA V+  +S+KTDI+  G+N GSKL KAQ+L ++I  E+  + L+
Sbjct: 614 AKAALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELNIEIRTEDDLIELI 666


>gi|296113927|ref|YP_003627865.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
 gi|295921621|gb|ADG61972.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
          Length = 691

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 271/712 (38%), Positives = 401/712 (56%), Gaps = 47/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE+     +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+    +I  +E+RGEV 
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +        
Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +L
Sbjct: 254 TTQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N 
Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN          G++ R G  + VGD V V RAG+VIPKV  +I   R  DA+P   P
Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L
Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             FF+       ++  ADI+ L ++ +   T    + G GD SV  +  +I K +  +L 
Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVAKMLSAIEKSKQTTLP 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIR VG   A SLA+ +        E+ +II     D  +L  VP +G+I AQ+
Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ +
Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|324009590|gb|EGB78809.1| DNA ligase, NAD-dependent [Escherichia coli MS 57-2]
          Length = 671

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/715 (35%), Positives = 408/715 (57%), Gaps = 56/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    +  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V    +   ++++Y+E++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G 
Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG 
Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++A  +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R
Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|326573825|gb|EGE23778.1| NAD-dependent DNA ligase [Moraxella catarrhalis O35E]
          Length = 691

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 272/712 (38%), Positives = 401/712 (56%), Gaps = 47/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+    +I  +E+RGEV 
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +        
Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +L
Sbjct: 254 TTQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N 
Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN          G++ R G  + VGD V V RAG+VIPKV  +I   R  DA+P   P
Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L
Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L 
Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIR VG   A SLA+ +        E+ +II     D  +L  VP +G+I AQ+
Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ +
Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|166216288|sp|Q0HWD2|DNLJ_SHESR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 688

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/717 (35%), Positives = 407/717 (56%), Gaps = 55/717 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++ + A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    ++
Sbjct: 16  QAVTPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAAD 75

Query: 70  DPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P     ++GG M L+ F ++TH  P LSL+  ++  D   F  R+           + F
Sbjct: 76  SPT---QRVGG-MALAKFEQITHLKPMLSLDNAFDEADFSAFHKRV-----SDRVGEVSF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187
             EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP ++   N PE++EV
Sbjct: 127 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244
           RGE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG  
Sbjct: 187 RGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 246

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             TS   AK  YE LQ+++  G PV++ ++  +    + +YY ++ + R+ LP++IDG+V
Sbjct: 247 EPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +
Sbjct: 307 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  
Sbjct: 367 GGVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPE 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+  +FP  CP+C S V R      G+ V   RC+GGL C AQ+ E +KHF SR A +I
Sbjct: 416 DAKAIAFPQHCPVCGSLVER----LEGEAVT--RCSGGLFCEAQRKEAIKHFASRKALDI 469

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I 
Sbjct: 470 DGMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAQAIE 519

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIR VG   A +LA ++ S +  A  +  I          LI+V  
Sbjct: 520 AAKTTTLPRFLYALGIREVGEATAANLATHFGSLE--ALRVATI--------EQLIQVED 569

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           +G+++AQ +  F+  P N+  ++AL+      P+I     +    ++ +  V TGTL ++
Sbjct: 570 IGEVVAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSAD-EQPLKGQTWVLTGTLNQL 628

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL
Sbjct: 629 NRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685


>gi|166216287|sp|Q0HK31|DNLJ_SHESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 688

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 257/717 (35%), Positives = 406/717 (56%), Gaps = 55/717 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++   A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    ++
Sbjct: 16  QAVTPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAAD 75

Query: 70  DPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P     ++GG M L+ F ++TH  P LSL+  ++  D   F  R+           + F
Sbjct: 76  SPT---QRVGG-MALAKFEQITHLKPMLSLDNAFDEADFSAFHKRV-----SDRVGEVSF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187
             EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP ++   N PE++EV
Sbjct: 127 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244
           RGE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG  
Sbjct: 187 RGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 246

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             TS   AK  YE LQ+++  G PV++ ++  +    + +YY ++ + RS LP++IDG+V
Sbjct: 247 EPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRSYLPFEIDGVV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +
Sbjct: 307 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  
Sbjct: 367 GGVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPE 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+  +FP  CP+C S V R      G+ V   RC+GGL C AQ+ E +KHF SR A +I
Sbjct: 416 DAKAIAFPQHCPVCGSLVER----LEGEAVT--RCSGGLFCEAQRKEAIKHFASRKALDI 469

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I 
Sbjct: 470 DGMGDKIVEQLIDKE----LVQSPADLFKLPASMMTMLDRM------GMKSATNLAQAIE 519

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIR VG   A +LA ++ S +  A  +  I          LI+V  
Sbjct: 520 AAKTTTLPRFLYALGIREVGEATASNLATHFGSLE--ALRVATI--------EQLIQVED 569

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           +G+++AQ +  F+  P N+  ++AL+      P+I     +    ++ +  V TGTL ++
Sbjct: 570 IGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPTIAAPSAD-EQPLKGQTWVLTGTLNQL 628

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL
Sbjct: 629 NRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685


>gi|54308062|ref|YP_129082.1| NAD-dependent DNA ligase LigA [Photobacterium profundum SS9]
 gi|81615410|sp|Q6LTU5|DNLJ_PHOPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46912488|emb|CAG19280.1| putative NAD-dependent DNA ligase [Photobacterium profundum SS9]
          Length = 676

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 253/704 (35%), Positives = 410/704 (58%), Gaps = 49/704 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +++L +L ++++YH   YY    P I D+EYD + ++  A+    P+L   + P+    +
Sbjct: 11  QQQLDTLREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEAEHPELMSVDSPS---QR 67

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG    S  +V H +P LSL+  +N E+L  F  R+    +      + +  EPK+DG 
Sbjct: 68  VGGTPLDSFTQVKHELPMLSLDNAFNDEELNAFEKRLLD--RLITAGHVSYCCEPKLDGL 125

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ YE G  V AA RGDG +GE+++  +R I +IP ++     P  +EVRGEV++ K 
Sbjct: 126 AVSLMYENGVLVQAASRGDGATGENITTNVRTIRSIPLKLQGEGWPVRLEVRGEVFMPKK 185

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254
            F  LN   +  G K +ANPRNAA+G LR+L+     TR L+F+ + +G    +  A+ Q
Sbjct: 186 GFDELNARALKKGDKAFANPRNAAAGSLRQLDSKIAATRPLSFYAYSVGVVEGMDLAESQ 245

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE L +++  G P+   +RQ  T + +++YY ++   R +L Y+IDG+V KVD+   Q+Q
Sbjct: 246 YERLVQLKGWGIPMCPEIRQLKTINDVIAYYQDIGERRQSLAYEIDGVVIKVDDVETQEQ 305

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEP+ +GG  ++NATLH
Sbjct: 306 LGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLH 365

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D         +V R G  + +GD V+++RAG+VIP++V ++ + R  +AQ  +FP  C
Sbjct: 366 NAD---------EVARLG--VMIGDTVIIRRAGDVIPQIVSVVESRRPDNAQAITFPITC 414

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G G++ ++  
Sbjct: 415 PVCESNVER----VEGEAVA--RCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQL 468

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG-FGDVSVTNLYDSINKRRNISLERF 553
              E     +  PA +F L       +  I  +L   G  S   L DS+   +  +L RF
Sbjct: 469 VDRE----MVTTPAGLFKL-------SAGIVTVLDRMGPKSAQKLVDSLANSKETTLPRF 517

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+SLGIR VG   A +LA ++       + +  I A + +    L+ VP VG+++A  ++
Sbjct: 518 IYSLGIREVGEATAANLANHF-------ETLEAITAASKE---QLLVVPDVGEVVANNLL 567

Query: 614 EFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F++   N+  VE L+      P+I + E+ V   ++ K +V TG+L ++ R  A+  + 
Sbjct: 568 NFFREAHNMDVVEDLIAVGIHWPAIDKPEEGVELPLDGKVVVLTGSLSQLTRSDAKAALQ 627

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            LGA V+  +S KTD+++ G+  GSKL KAQ+L ++I +E+  +
Sbjct: 628 ALGAKVTGSVSSKTDLLVAGEAAGSKLTKAQELDIEIWDEQALV 671


>gi|116690045|ref|YP_835668.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
 gi|166215562|sp|A0K8E8|DNLJ_BURCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215593|sp|Q1BHI7|DNLJ_BURCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116648134|gb|ABK08775.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
          Length = 691

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/709 (36%), Positives = 399/709 (56%), Gaps = 54/709 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L R    +    P+L     P+ P  ++GGE  
Sbjct: 20  LRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVT---PDSPTQRVGGEAA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  ED+  F  R+     K  D      + + +  E K DG 
Sbjct: 77  GGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE+G FV AA RGDG +GEDV+  +R I +IP ++   ++P +++VRGEV + K 
Sbjct: 137 AISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKG 253
           DF  LN+   A  ++ +ANPRNAA+G LR+L+ + IT  R L+FF +G+G    +     
Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMPMPDT 255

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              +L     LG PVN      +   G++ ++ ++   R +LPYDIDG+VYKV+    Q+
Sbjct: 256 HSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQE 315

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATL
Sbjct: 316 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 375

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  P+ 
Sbjct: 376 HNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTE 424

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D 
Sbjct: 425 CPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQ 478

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RF
Sbjct: 479 LVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTTLARF 528

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIRHVG   A+ LAK++ S       +  I+  + ++   L+ V  VG I+A+++ 
Sbjct: 529 IYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESLH 578

Query: 614 EFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +F+    N   +E L    K   P      K     +  K +V TGTL  + R  A+E +
Sbjct: 579 QFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEML 638

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 639 EAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|261418603|ref|YP_003252285.1| NAD-dependent DNA ligase LigA [Geobacillus sp. Y412MC61]
 gi|319765418|ref|YP_004130919.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52]
 gi|261375060|gb|ACX77803.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC61]
 gi|317110284|gb|ADU92776.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52]
          Length = 670

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 261/708 (36%), Positives = 399/708 (56%), Gaps = 56/708 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA +  + L + +  +   YY   +P + D+EYD L +   AI   +P+L  S+ P   
Sbjct: 4   QQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPT-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +IGG    +  KVTH +P +SL   ++  DLR F  R+     +++     +  E KI
Sbjct: 62  -QRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRV-----RQEVGEAAYVCELKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  +R I ++P  L L  P  +E RGE ++ 
Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLP--LRLKEPVSLEARGEAFMP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ +V+GL    E+  + 
Sbjct: 174 KASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLYVYGLANAEELGIES 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  ++ LGF VN   R+      ++++ NE    R  LPY+IDG+V KVD F+ Q+
Sbjct: 234 HSEALHYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQR 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  ATL
Sbjct: 294 ELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF  P+ 
Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTH 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +VR L+ +      A RC     C AQ  ERL HF SR A NIEGLG++ +  
Sbjct: 403 CPECESELVR-LDGEV-----ALRCLNP-KCPAQLRERLIHFASRAAMNIEGLGEKVVTQ 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F     A  +   AD++ L + Q     ++      G+ S TNL  +I   +  SLER 
Sbjct: 456 LFN----AGLVHDVADLYRLTKEQLIGLERM------GEKSATNLLAAIEASKQNSLERL 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR+VGA+ A+ LA+++ + +   +               L+ VP +G+ +A +I+
Sbjct: 506 LFGLGIRYVGAKAAQLLAEHFETMERLEKATKE----------ELMAVPEIGEKMADSII 555

Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            F+  P     +  L      +    P     E    S    K +V TG L  + R++A+
Sbjct: 556 AFFSQPEAAELLHELRLYGVNMAYKGPKRA-AEAPADSAFAGKTVVLTGKLASMSRNEAK 614

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           E + +LG  V+  +SR TDI+I G++ GSKLEKAQQLG++I +E +FL
Sbjct: 615 EEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFL 662


>gi|325982988|ref|YP_004295390.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212]
 gi|325532507|gb|ADZ27228.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212]
          Length = 677

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/717 (36%), Positives = 402/717 (56%), Gaps = 53/717 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            IE+ R  +  L  EI  H+  YY    P I D+EYD L R    I   +P L  ++ P 
Sbjct: 4   GIEKIRHRIQDLRAEIELHNYRYYVLDTPTIPDAEYDRLLRELQHIEQDYPQLITADSPT 63

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++G     +  +V H  P LSL   ++  ++  F  R+    +    +++ + +EP
Sbjct: 64  ---QRVGAAPLKAFSQVVHRRPMLSLSNAFDDAEVEAFDRRV---CEGLAVDNVEYAVEP 117

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEV 191
           K DG  +++ YE G F   A RGDG++GE+++  +R I +IP  L  LN P  +EVRGEV
Sbjct: 118 KFDGLAVSLCYENGIFKTGATRGDGYTGENITLNLRTIRSIPLSLPVLNPPSWLEVRGEV 177

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
            + + DFLALN    A G K +ANPRNAA+G LR+L+P    TR L FF +G+G+  +  
Sbjct: 178 LMLRADFLALNQRQSAKGEKEFANPRNAAAGSLRQLDPGITATRRLTFFAYGVGEYQDCH 237

Query: 251 A--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                   ++  +  L FP+            +++YY  ++  R  LPYDIDG+VYKV+ 
Sbjct: 238 MPLDKHSHVMAYLASLHFPIAKEGGVVKGLQELLAYYQTIEVQRVRLPYDIDGVVYKVNS 297

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q++LG  +R+PR+ ++HKF  ++A T+L  I+IQ+GRTG LTPVARL+PV +GG  +
Sbjct: 298 LAQQERLGFVSRAPRFALAHKFPAQEAITQLSGIEIQVGRTGALTPVARLKPVFVGGVTV 357

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHN D I+            +D+R+GD V+V+RAG+VIP++V +I+ +R  D Q F
Sbjct: 358 TNATLHNADEIE-----------RKDVRIGDTVIVRRAGDVIPEIVSVILEKRPVDTQVF 406

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C ++ VR ++       A  RCTGGL C AQ+ + + HF SR A +IEGLG 
Sbjct: 407 VMPEHCPVCGAKAVRLVDE------AVSRCTGGLFCPAQRKQAILHFASRRAMDIEGLGD 460

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++      D A  IR PAD++ L          + ++    + S  N+  +I K ++ 
Sbjct: 461 KLVEQMV---DRAI-IRTPADLYKL------GLGALADLERMAEKSAGNILRAIEKSKHT 510

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIR+VG   A+ LA +  S       ++ +I   ++    L ++P VG ++
Sbjct: 511 TLARFIYALGIRNVGEATAKDLAAHCGS-------LDRLIEAGSE---RLQQIPDVGPVV 560

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIENKKLVFTGTLQKIQR 663
           AQ+I +F+    N   +E  L+        HE        +  ++ K  V TGTL  + R
Sbjct: 561 AQSIADFFAEAHNREVIEQ-LRACGVYWNEHEGISVLAGEARPLQGKTFVLTGTLPIMSR 619

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A+E +  LG  VS  +S+KTD ++VG +PGSK +KA  LG+ +++E   L LLQ+
Sbjct: 620 EEAKEKIELLGGKVSGSVSKKTDYVVVGADPGSKYDKALSLGIAVLDEAGLLELLQE 676


>gi|113969850|ref|YP_733643.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
 gi|113884534|gb|ABI38586.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
          Length = 690

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 257/717 (35%), Positives = 406/717 (56%), Gaps = 55/717 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++   A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    ++
Sbjct: 18  QAVTPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAAD 77

Query: 70  DPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P     ++GG M L+ F ++TH  P LSL+  ++  D   F  R+           + F
Sbjct: 78  SPT---QRVGG-MALAKFEQITHLKPMLSLDNAFDEADFSAFHKRV-----SDRVGEVSF 128

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187
             EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP ++   N PE++EV
Sbjct: 129 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEV 188

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244
           RGE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG  
Sbjct: 189 RGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 248

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             TS   AK  YE LQ+++  G PV++ ++  +    + +YY ++ + RS LP++IDG+V
Sbjct: 249 EPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRSYLPFEIDGVV 308

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +
Sbjct: 309 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 368

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  
Sbjct: 369 GGVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPE 417

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+  +FP  CP+C S V R      G+ V   RC+GGL C AQ+ E +KHF SR A +I
Sbjct: 418 DAKAIAFPQHCPVCGSLVER----LEGEAVT--RCSGGLFCEAQRKEAIKHFASRKALDI 471

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I 
Sbjct: 472 DGMGDKIVEQLIDKE----LVQSPADLFKLPASMMTMLDRM------GMKSATNLAQAIE 521

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIR VG   A +LA ++ S +  A  +  I          LI+V  
Sbjct: 522 AAKTTTLPRFLYALGIREVGEATASNLATHFGSLE--ALRVATI--------EQLIQVED 571

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           +G+++AQ +  F+  P N+  ++AL+      P+I     +    ++ +  V TGTL ++
Sbjct: 572 IGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPTIAAPSAD-EQPLKGQTWVLTGTLNQL 630

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL
Sbjct: 631 NRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 687


>gi|156502078|ref|YP_001428143.1| DNA ligase [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|290954221|ref|ZP_06558842.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1]
 gi|295312341|ref|ZP_06803126.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1]
 gi|166214810|sp|A7NB34|DNLJ_FRATF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156252681|gb|ABU61187.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 678

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 267/728 (36%), Positives = 410/728 (56%), Gaps = 65/728 (8%)

Query: 6   LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + P E  SI+    A+ EL +    L   +S     Y+   KPII DS+YD L R    +
Sbjct: 1   MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +  P     +  N  L+++GGE+      + H     SL  ++++E+LR F  +I    
Sbjct: 61  VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
               +  I    EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L+
Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169

Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
             N PE +EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L
Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229

Query: 237 NFFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
             + +G+G  S+  ++ + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ 
Sbjct: 230 KLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDGLV+K++   LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TP
Sbjct: 290 LAYDIDGLVFKINNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG +++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV
Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVV 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R  DAQ    P+ CP+C S+ + ++N +     A +RCTGG  C AQ  ERLKH
Sbjct: 399 KSLPQYRKSDAQIVEMPTNCPVCDSK-IENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I+ LG + ++        A  I+ PADI+ L   Q T   ++         S
Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFEQLTGLERM------AAKS 502

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N+ DSI K +  SL RFIF++GI+ +G   + +LA ++ S ++F           +  
Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDALANHFGSLESF----------RDAK 552

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650
           +  LI +  +G+IIA  IV F+ +  NI  VE  L    K  +P    H  N S     K
Sbjct: 553 FEELIEINYIGEIIANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNES--FTGK 610

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+ +   R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ 
Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670

Query: 711 EEQFLFLL 718
           E+    LL
Sbjct: 671 EDNLKDLL 678


>gi|71907364|ref|YP_284951.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB]
 gi|123746888|sp|Q47FA0|DNLJ_DECAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71846985|gb|AAZ46481.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB]
          Length = 683

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 270/722 (37%), Positives = 393/722 (54%), Gaps = 62/722 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   K  +    E+  H   YY    P I D+EYD L R    +   +P+L  ++ P   
Sbjct: 5   EDVAKRAAWYRSELERHSYAYYVLDAPTIPDTEYDKLFRELQELEQQYPELLTADSPT-- 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            +++GG          H +P LSL   +  E++  F  RI    +     ++ + +EPK 
Sbjct: 63  -HRVGGVPLKEFPPRQHGVPMLSLNNAFAPEEVEAFDKRIRDGLETI--AAVDYAVEPKF 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  I++ YE G F   A RGDG +GE+V+  +R +  IP R+     P +IE+RGEV +
Sbjct: 120 DGLAISLTYENGVFTCGATRGDGVTGEEVTPNLRTLRCIPLRLRGEGWPALIEIRGEVLM 179

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251
            K DF  LN      G K +ANPRNAA+G LR+L+ + IT  R L+FF +G+G  ++  A
Sbjct: 180 FKADFAELNARQRERGDKEFANPRNAAAGSLRQLD-SKITAGRPLSFFAYGVGAGADALA 238

Query: 252 -KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   EM+  +   GFPV    R      G++ Y+ E+   R  LPYDIDG+VYKV+   
Sbjct: 239 VKTHGEMMGLLAAWGFPVAEERRVVQGVRGLLGYFVEIGVKRPGLPYDIDGVVYKVNRLD 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q QLG  +R+PR+ I+HKF  ++A T +L ID+Q+GRTG +TPVARL+PV +GG  +TN
Sbjct: 299 WQAQLGFVSRAPRFAIAHKFPAEEALTEVLGIDVQVGRTGAITPVARLKPVFVGGVTVTN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER--------H 422
           ATLHNED ++            +D+R+GD V+V+RAG+VIP+VV I+  +R         
Sbjct: 359 ATLHNEDEVR-----------RKDVRLGDTVIVRRAGDVIPEVVAIVPEKRPMRDLFGSE 407

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P   PF  P+ CP C S VV+      G   A  RCTGGL C AQ+ + L HF +R A +
Sbjct: 408 PLNPPFELPATCPECGSAVVK------GDDEAIARCTGGLYCPAQRKQALWHFAARRAMD 461

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLY 539
           IEGLG + +D        A  +  PAD++ L          +E + G    G+ S  NL 
Sbjct: 462 IEGLGDKLVDQLVD----AGLVHSPADLYGL---------TVETLAGLERMGEKSAQNLV 508

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I+K R  +L RFIF LGIR+VG   AR LAK++            + A    D  +L 
Sbjct: 509 AAIDKSRQTTLARFIFGLGIRNVGEATARDLAKHF----------GGLDALLAADSAALQ 558

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTL 658
            VP VG ++A+++  F+    N   ++ L +  VS   G   +     +  K LV TGTL
Sbjct: 559 MVPDVGPVVAESLAAFFAEAHNREVIDGLRRAGVSWPEGEPAQAGPQLLAGKTLVLTGTL 618

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             ++R +A+  V   G  V+  +S+KTD ++ G+  GSKLEKAQ+LGV +++E + + LL
Sbjct: 619 PTLKRDEAKALVEAAGGKVAGSVSKKTDYVVAGEEAGSKLEKAQELGVPVIDEAELMKLL 678

Query: 719 QQ 720
            +
Sbjct: 679 AK 680


>gi|120554094|ref|YP_958445.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8]
 gi|166215819|sp|A1TZT9|DNLJ_MARAV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120323943|gb|ABM18258.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8]
          Length = 678

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 262/715 (36%), Positives = 402/715 (56%), Gaps = 52/715 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  RK + SL   +  H+  YY    P I D+EYD L R    +    P+LA +ED   P
Sbjct: 6   ETIRKRVDSLRATLEDHNYYYYVQDDPRIPDAEYDRLFRELQKLEAEHPELA-TED--SP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G     S  +V H +P LSL+  ++ ++LR F  R+        D +I +  EPK+
Sbjct: 63  TRRVGSSAETSFEEVIHRLPMLSLDNAFSEDELRDFDRRVRDRLGA--DGAIEYVCEPKL 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  +++ YE G    AA RGDG++GED++A IR IP++P ++     P+++EVRGEVY+
Sbjct: 121 DGLAVSLHYENGTLTRAATRGDGYTGEDITANIRTIPSVPLKLRGSGYPDLVEVRGEVYM 180

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE-IFA 251
            +  F  LN+ +   G K + NPRNAA+G LR+   T   R  L    + +  T E +  
Sbjct: 181 PRAGFEKLNERLAEQGEKTFVNPRNAAAGSLRQKKSTVTARRPLELCAYSMAVTDESVLP 240

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +  ++ LQ +R  GF +N  +R+A      +  YNE+ + R +LPY+IDG+V+KV+   L
Sbjct: 241 ETHWDSLQLVRDWGFRINPEMRKAEGVEACLDAYNELMAKRDSLPYEIDGIVFKVNRLDL 300

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I+HKF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NA
Sbjct: 301 QQELGFVSRAPRWAIAHKFPAQEELTIIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNA 360

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L           D+ +GD V ++RAG+VIP+VV ++  +R  +A     P
Sbjct: 361 TLHNMDEIRRL-----------DVHIGDTVFIRRAGDVIPQVVKVVPEKRPAEAPMVEMP 409

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S +V+      G+ VA  RC+GGL C AQ+ E ++H+ SR A +IEGLG + +
Sbjct: 410 EHCPVCGSDIVQ----IEGEAVA--RCSGGLYCPAQRKEAIRHYASRKAMDIEGLGDRLI 463

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           +   AD++ L + Q  S  ++      GD S  NL  +I++ R   L 
Sbjct: 464 EVLVDE----GMVSTVADLYRLTKFQIASLERM------GDKSAANLIAAIDRSREPVLW 513

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+++LGIR VG   A+ LA ++            + A +  D  +L  VP VG I+A  
Sbjct: 514 RFLYALGIREVGEATAKGLAAHF----------GTLEAISAADEETLQTVPDVGPIVAGH 563

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE----NKKLVFTGTLQKIQRHKAQ 667
           I  F+  P N   + A LKE    +   E+ V S  E     +  V TGTL  + R +A+
Sbjct: 564 IRSFFDQPHNQETL-AALKEA--GVTWQEEQVLSADEQPLNGQTWVLTGTLSGMTRDQAK 620

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           E + QLGA V+  +S+KT  ++ G+  GSKL KA+QLGV +++EE    LL+++ 
Sbjct: 621 EKLEQLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLGVPVLDEEGLANLLREHG 675


>gi|107028796|ref|YP_625891.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
 gi|105897960|gb|ABF80918.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
          Length = 746

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/709 (36%), Positives = 399/709 (56%), Gaps = 54/709 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L R    +    P+L     P+ P  ++GGE  
Sbjct: 75  LRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRVGGEAA 131

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  ED+  F  R+     K  D      + + +  E K DG 
Sbjct: 132 GGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACELKFDGL 191

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE+G FV AA RGDG +GEDV+  +R I +IP ++   ++P +++VRGEV + K 
Sbjct: 192 AISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEVLMFKR 251

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKG 253
           DF  LN+   A  ++ +ANPRNAA+G LR+L+ + IT  R L+FF +G+G    +     
Sbjct: 252 DFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMPMPDT 310

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              +L     LG PVN      +   G++ ++ ++   R +LPYDIDG+VYKV+    Q+
Sbjct: 311 HSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQE 370

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATL
Sbjct: 371 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 430

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  P+ 
Sbjct: 431 HNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTE 479

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D 
Sbjct: 480 CPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQ 533

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RF
Sbjct: 534 LVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTTLARF 583

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIRHVG   A+ LAK++ S       +  I+  + ++   L+ V  VG I+A+++ 
Sbjct: 584 IYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESLH 633

Query: 614 EFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +F+    N   +E L    K   P      K     +  K +V TGTL  + R  A+E +
Sbjct: 634 QFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEML 693

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 694 EAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 742


>gi|308187689|ref|YP_003931820.1| DNA ligase [Pantoea vagans C9-1]
 gi|308058199|gb|ADO10371.1| DNA ligase [Pantoea vagans C9-1]
          Length = 672

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/717 (35%), Positives = 403/717 (56%), Gaps = 59/717 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   + +H+  Y+    P + D+EYD L R    +    PDL     P+ 
Sbjct: 1   MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H +P LSL+  ++      F  R+    +  DD  I +  E K
Sbjct: 58  PTQRVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKSSDD--ITYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++A +R I  IP R+   NIP  +EVRGE++
Sbjct: 116 LDGAAVSLMYENGLLVRAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEIF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           +++  F  LN+E      K +ANPRNAA+G LR+L+P     R L FF +G G  +  E+
Sbjct: 176 MTQRGFEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                   LQ+ +  G PV++ ++  +     +++Y +++  R  L +DIDG+V KVD  
Sbjct: 236 -PHSHMGRLQQFKAWGLPVSDRIKLVHNAEEALAFYRDIEQQRPNLGFDIDGVVIKVDSQ 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 ALQEQLGFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GDRV+++RAG+VIP+VV++++ ER  + +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ V   RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPAHCPVCGSEVER----VEGESVT--RCTGGLICGAQRKEALKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ D++ K ++ +
Sbjct: 458 IIDQLVEKE----YVDTPADLFRL------TAGKLTGLDRMGPKSAQNIVDALEKAKSTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+++LGIR VG   A +LA ++   Q             + D  +LI VP VG ++A
Sbjct: 508 LARFLYALGIREVGEATAANLANHFGELQKVM----------DADLEALIAVPDVGKVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKI 661
             +  F +   N      ++++++  IG H         + + S    K +V TG+L ++
Sbjct: 558 AHVRNFMEEESN----REVIRQLTDDIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQM 613

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R  A+  +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 614 NRDDAKAQLIALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670


>gi|284006788|emb|CBA72055.1| DNA ligase [Arsenophonus nasoniae]
          Length = 670

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/716 (35%), Positives = 410/716 (57%), Gaps = 54/716 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ +  L+ L+Q++ +H+  Y+    P I D+EYD L +    +    P+   ++ P  
Sbjct: 1   MKEQQNYLARLKQQLRHHEYLYHVLDTPEIPDAEYDRLMQELKKLEAEHPEWITADSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H IP LSL+ +++ E    F  R++   + K+++ + F  E K
Sbjct: 60  --QRVGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRVHD--RLKNNSQLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A IR I  IP R+   NIPE IE+RGEV+
Sbjct: 116 LDGLAVSLLYEQGELVQAATRGDGTTGENITANIRTIRAIPLRLTGDNIPERIEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           ++   F  LN+E      K +ANPRNAA+G LR+L+P     R L FF +G G    + A
Sbjct: 176 MTHRGFEKLNEEARRNDGKIFANPRNAAAGSLRQLDPRITAKRPLAFFCYGFG----LLA 231

Query: 252 KGQ-----YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            GQ     Y+ L + +  G PV++ +        +++YY++++  R  L +DIDG+V KV
Sbjct: 232 GGQLPASHYQCLMQFKKWGLPVSDKIALCQNSQQVLAYYHQIEHARLGLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D   LQ++LG  AR+PRW  + KF  ++  T L D++ Q+GRTG +TPVARL PV + G 
Sbjct: 292 DPLQLQEELGFVARAPRWATAFKFPAQEQITLLHDVEFQVGRTGAITPVARLAPVLVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHN D I+ L            +R+GD V+++RAG+VIP++V+++ + R  D++
Sbjct: 352 IVSNATLHNADEIERL-----------GVRIGDTVVIRRAGDVIPQIVNVLTDRRPIDSR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP  CP+C S + R      G+ V   RCTGGL C+AQ+   LKHFVSR A +I+G+
Sbjct: 401 EIRFPIHCPVCGSAIER----IEGEAVI--RCTGGLICAAQRKGALKHFVSRRAMDIDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D     E     +   AD++ L      +   +  +   G  S  NL ++++K +
Sbjct: 455 GDKIIDQLVAKE----YVTTAADLYRL------NLDILARLERMGPKSAQNLINALDKSK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   A +LA +Y +  +              D  SL +V  VG+
Sbjct: 505 QTTLARFIYALGIREVGEATASNLAAHYTTLTSLMAA----------DIESLKKVQDVGE 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+A+ IV F+    N   V  L+ E+  S  R   K   S    K +V TGTL ++ R +
Sbjct: 555 IVAKHIVNFFHEQHNRDVVNQLVNEIGISWPRMPAKKTDSPFTGKTIVLTGTLNRLTRDE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            ++ +  LGA V+  +S+KTD++I G+  GSKL KA +LG+KI+NE++ + LL+ +
Sbjct: 615 LKDKLILLGAKVTGSVSKKTDLVIAGEAAGSKLTKANELGIKIINEDELIALLEDH 670


>gi|16761347|ref|NP_456964.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|81513487|sp|Q8Z4W4|DNLJ_SALTI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|25294013|pir||AI0809 DNA ligase (NAD) (EC 6.5.1.2) - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16503646|emb|CAD07659.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 671

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/716 (35%), Positives = 407/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQTGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INAQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|148658591|ref|YP_001278796.1| DNA ligase [Roseiflexus sp. RS-1]
 gi|166216236|sp|A5V1U3|DNLJ_ROSS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148570701|gb|ABQ92846.1| DNA ligase, NAD-dependent [Roseiflexus sp. RS-1]
          Length = 726

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 267/727 (36%), Positives = 389/727 (53%), Gaps = 64/727 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + + +L ++I YH+  YY   +P+I D+EYDAL R   A+  A P+L     P+ P  ++
Sbjct: 8   RRVEALREQIRYHNYRYYVLDEPVISDAEYDALMRELRALEAAHPELV---TPDSPTQRV 64

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G        KV H +P LSL    +  ++R +  R+ R     +D  + F +EPKIDG  
Sbjct: 65  GAPPGEQFAKVQHVVPMLSLANASDEAEVRAWYDRVVRLL--GNDARVAFVVEPKIDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----------------NIP 182
           +T+ Y  G  V  A RGDG +GEDV+A +R IP IP  L                   IP
Sbjct: 123 VTLIYRNGILVRGATRGDGETGEDVTANLRTIPGIPLRLGAFASNPEGQTNGAPVQAVIP 182

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241
            +IEVRGEVY+   DFL LN+++ A G K  ANPRNAA+G LR+ +P    R  L FF +
Sbjct: 183 PLIEVRGEVYMRIADFLRLNEQLAASGEKVAANPRNAAAGSLRQKDPAITARRPLRFFAY 242

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G+G+   +  + Q+E L  +R LGFPVN   R+       ++Y  E  + R  L Y++DG
Sbjct: 243 GIGQIEGVQVQTQWETLNLLRTLGFPVNRDARRFERLDDALAYCREWMTRRDELEYEVDG 302

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K+D  + Q QLG   R PRW I+ KF  ++A +RL+DI + +GRTG++TP A +EPV
Sbjct: 303 VVIKIDSLAQQAQLGVVGRDPRWAIAFKFPAREAVSRLIDIVVNVGRTGVITPNAVIEPV 362

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           NIGG  + NA+LHN DYI             RDIR+GD V+VKRAG+VIP +V  IV  R
Sbjct: 363 NIGGVTVRNASLHNADYI-----------AERDIRIGDYVIVKRAGDVIPYIVGPIVARR 411

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               +P+  P+ CP C + + R      G++  A+RC     C AQ   R++HFVSR A 
Sbjct: 412 DGSERPWQMPATCPACGTPLER----AEGEV--AYRCPNFGICPAQITRRIEHFVSRGAM 465

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I G+G++Q+  F +       ++  AD++TL      +     N+ G+G   V NL  +
Sbjct: 466 DIAGIGEKQVQLFVERG----WVQDVADLYTL------TPDHFANVEGYGPKRVANLLSA 515

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   +N  L R I  LGIR+VG  +A+ LA ++ S    A    + I     D L  I  
Sbjct: 516 IAGSKNRPLHRLIVGLGIRYVGEVVAQILADHFGSLDALAAASADEI-----DALEGI-- 568

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTL 658
              G  IA ++  ++  P +  A+ A LK         E   +S    +  K  V TGTL
Sbjct: 569 ---GPAIAASVAAYFARPES-KALIAKLKRAGVRTEAQETARASRGNALAGKTFVITGTL 624

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFLFL 717
             + R +A   +T  G  VS  +S+KTD +++G  P G+K  KAQ+LG+ +++E   L L
Sbjct: 625 PSMSREEASALITAHGGKVSGSVSKKTDYLVIGAEPGGTKFAKAQELGIPMIDEAGLLAL 684

Query: 718 LQQYNTT 724
           +    T 
Sbjct: 685 IGSGRTA 691


>gi|317401960|gb|EFV82562.1| DNA ligase [Achromobacter xylosoxidans C54]
          Length = 699

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 268/730 (36%), Positives = 398/730 (54%), Gaps = 70/730 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A +  + L  EI  H+  YY Y  P I D+EYD L R    +  A P+L     P  P  
Sbjct: 9   AAETAARLRAEIEQHNVRYYVYDDPSISDAEYDRLMRELQDLEAAHPELV---TPESPTQ 65

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-----DNSIFFTLE 131
           ++G     +   V H++P LSL   ++ ED+  F  R+    +          + +F  E
Sbjct: 66  RVGAAPVSAFGSVRHAVPMLSLGNAFDEEDVVAFDRRVTDTLRGAGLLGPAQQAEYFC-E 124

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I++RYE G+ V AA RGDG +GEDV++ IR I  IP  LS   P+++EVRGEV
Sbjct: 125 LKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLSGPAPKVLEVRGEV 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK----- 245
            +++ DF  LN        K + NPRNAA+G LR+L+P     R L FF +G G+     
Sbjct: 185 LMNRADFEKLNAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVRGLP 244

Query: 246 ----------------TSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEM 288
                            S +  K    ML  +  LG PVN     +A    G++++Y ++
Sbjct: 245 GTQSGLFDEASAGAADASTLPEKSHGAMLDWLASLGLPVNVKHNHRATGAEGLMAFYAKV 304

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
            ++R  LPYDIDG+VYKVD    QK LG  AR+PR+ ++HKF  ++A+T LLDI++Q+GR
Sbjct: 305 GALRPELPYDIDGVVYKVDSLPAQKLLGFVARAPRFALAHKFPAEEATTTLLDIEVQVGR 364

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVARL+PV +GG  +TNATLHNED I+            +D+R+GD V+V+RAG+
Sbjct: 365 TGAITPVARLKPVFVGGVTVTNATLHNEDEIR-----------RKDVRIGDTVIVRRAGD 413

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+VV  ++ +R  DA+ F  P  CP+C S + R L  +T       RCTGGL C+AQ+
Sbjct: 414 VIPEVVGAVLEKRPADAREFVMPKACPVCGSAIER-LEDET-----IARCTGGLFCAAQR 467

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
            + L H  SR A +IEGLG++ ++    S      ++  AD+F+L+  +     ++    
Sbjct: 468 KQTLWHAASRKALDIEGLGEKLVEQLVDSG----RVKSLADLFSLRPLELVGLDRM---- 519

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G  S  NL ++I+K R  +L R +F+LGIRHVG   AR +A+++ S       I  I+
Sbjct: 520 --GQKSADNLVEAIDKARAPALGRLLFALGIRHVGETTARDVARHFGS-------IEAIM 570

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             + D   +L  VP VG ++A +I  F+    N   +  L  +   ++        + + 
Sbjct: 571 DADED---ALSSVPDVGPVVAGSIRRFFAEQHNRDVIGQLKAQGVHAVAEAVPQ-DTTLA 626

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K  V TGTL    R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LGV +
Sbjct: 627 GKTFVLTGTLPNWTREEASMRIQAAGGKVSGSVSKKTAYLVAGEDAGSKLTKAQELGVTV 686

Query: 709 MNEEQFLFLL 718
           ++E+    LL
Sbjct: 687 LDEDGLKELL 696


>gi|24374425|ref|NP_718468.1| DNA ligase, NAD-dependent [Shewanella oneidensis MR-1]
 gi|81460839|sp|Q8ED70|DNLJ_SHEON RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24348997|gb|AAN55912.1|AE015728_1 DNA ligase, NAD-dependent [Shewanella oneidensis MR-1]
          Length = 689

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 258/717 (35%), Positives = 404/717 (56%), Gaps = 55/717 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++ + A+  + +L Q ++ H+  YY    P I DSEYD L ++   +   +P    ++
Sbjct: 16  QAVTPQTAQPLMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQQLKKLEAEYPQFVLAD 75

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFF 128
            P     ++GG       ++TH  P LSL+  ++  D   F  R+  R  Q      + F
Sbjct: 76  SPT---QRVGGLALAKFEQITHLKPMLSLDNAFDEADFTAFHKRVSDRVGQ------VSF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187
             EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP R+   N PE++EV
Sbjct: 127 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLRLRGNNYPELVEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244
           RGE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG  
Sbjct: 187 RGEAFMPKAAFEALNERARLKDDKQFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 246

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             +S   AK  YE LQ+++  G PV++ ++  +  + + +YY ++ + RS LP++IDG+V
Sbjct: 247 EPSSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELNQVFAYYKDILTRRSDLPFEIDGVV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +
Sbjct: 307 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  
Sbjct: 367 GGVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRSE 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DAQ   FP  CP+C S V R      G+ VA  RC+GGL C AQ+ E +KHF SR A +I
Sbjct: 416 DAQAIVFPQHCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDI 469

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I 
Sbjct: 470 DGMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLALAIE 519

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIR VG   A +LA ++ S    A  I  I          LI V  
Sbjct: 520 AAKTTTLPRFLYALGIREVGEATAANLAAHFGSLD--ALRIATI--------EQLIEVED 569

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           +G+++AQ +  F+  P N+  ++AL+      P+I     +    ++ +  V TGTL ++
Sbjct: 570 IGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIEAPSAD-EQPLKGQTWVLTGTLNQL 628

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL
Sbjct: 629 NRNDAKAQLQVLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685


>gi|238790828|ref|ZP_04634584.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
 gi|238721075|gb|EEQ12759.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
          Length = 670

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/710 (35%), Positives = 409/710 (57%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  ++ P  
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITNDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ E    F  R++   + K    + F  E K
Sbjct: 60  --QRVGAAPLDAFDQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++  +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+N V+       ++++Y +++  R++L +DIDG+V KVD   
Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVKLCTGSDQVIAFYRQVEQDRASLGFDIDGVVIKVDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++++R  DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PDHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL      +  K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTL------TAGKLTGLDRMGPKSAQNLIVALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNL----------RAADIEALKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +E L K +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLSEEHNQKVIETLEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668


>gi|218690549|ref|YP_002398761.1| NAD-dependent DNA ligase LigA [Escherichia coli ED1a]
 gi|254781322|sp|B7MY64|DNLJ_ECO81 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218428113|emb|CAR09030.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a]
          Length = 671

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/715 (35%), Positives = 408/715 (57%), Gaps = 56/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    +  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V    +   ++++Y+E++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G 
Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGLKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG 
Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++A  +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R
Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|161502427|ref|YP_001569539.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|190359281|sp|A9MIG0|DNLJ_SALAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160863774|gb|ABX20397.1| hypothetical protein SARI_00461 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 671

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/716 (35%), Positives = 408/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R   A+    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRALEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEEARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++++Y+ ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLAFYHNVEEDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIDRL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                RF+++LGIR VG   A  LA Y+ + +          A + D+   L +VP VG 
Sbjct: 505 ATIFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AASIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNREVIGQLLAEGVHWPAPVV-INAQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L LL
Sbjct: 614 RDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669


>gi|39995996|ref|NP_951947.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA]
 gi|81702997|sp|Q74ER9|DNLJ_GEOSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|39982761|gb|AAR34220.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA]
 gi|298505011|gb|ADI83734.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens KN400]
          Length = 670

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/710 (36%), Positives = 391/710 (55%), Gaps = 48/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A   +++L  E+  H+  YY   +P I D+EYD L R    +   FPDLA    P+ P
Sbjct: 4   QTAADRVAALRTELERHNRLYYAEDRPEITDAEYDLLFRELVDLETRFPDLA---APDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG       +VTH IP LSLE  +   ++  F  R+ RF     D  I +  EPK+
Sbjct: 61  TQRVGGAPLDKFEQVTHRIPMLSLENAFTDVEIADFDDRVKRFLGLHGDVEIDYVCEPKM 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  + + YE+G     + RGDG  GE+V+  ++ +  IP R+     PE++EVRGEVY+
Sbjct: 121 DGLAVELVYERGILTVGSTRGDGVVGENVTHNLKTVRGIPLRLRCEQPPELLEVRGEVYL 180

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251
               F  LN +    G  P+ANPRNAA+G +R+L+ + IT  R L  F +  G+      
Sbjct: 181 PLAAFQRLNAQREEEGEPPFANPRNAAAGSIRQLD-SRITARRPLAIFCYAPGEVRGASF 239

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E L ++   G PVN  +R       I++YY EM   R +LPY+IDG+V KVD F+L
Sbjct: 240 AAQTEFLDRIGEWGLPVNPLIRPVKGVAEILAYYREMTERRDSLPYEIDGVVVKVDSFAL 299

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LGE++RSPRW ++ KF  +QA T + DI   +GRTG++TP A L PV + G  ++ A
Sbjct: 300 QRELGEKSRSPRWAVAVKFPPRQAVTVVEDIVPSVGRTGVITPTANLRPVEVSGVTVSRA 359

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN + ++            +DIR+GD V+++RAG+VIP VV ++  +R    +P   P
Sbjct: 360 TLHNWEEME-----------RKDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERPLPIP 408

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S VV+  +        A RC  GL+C AQ  E + HF SRDA ++EGLG++ +
Sbjct: 409 AVCPECGSEVVKIPDE------VAVRCM-GLSCPAQIRESIIHFASRDAMDMEGLGEKYI 461

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +       ++  AD++TL + Q     ++      GD    NL ++I   +   L 
Sbjct: 462 EQLLR----LGLVKNVADLYTLTKDQFMQFDRM------GDKLAENLLNAIEASKQRELS 511

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIRHVG   A+ LA  + S +N  +               L+ +  VG  +A++
Sbjct: 512 RFIFALGIRHVGEHTAKLLAGAFGSIENLERATEE----------ELLSIREVGPQVARS 561

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I+ F++N  N   +  + K  V P+    EK V      K  VFTG L +  R +AQ+ V
Sbjct: 562 IITFFRNEGNRETIRRMFKAGVRPTA--EEKKVGGRFTGKTFVFTGALTRFSRPEAQKMV 619

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + G   +  +S+KTD ++ G   GSKL+KA+QLGV+++ E++FL +L++
Sbjct: 620 EKEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVRVLTEDEFLAMLEE 669


>gi|327399096|ref|YP_004339965.1| DNA ligase [Hippea maritima DSM 10411]
 gi|327181725|gb|AEA33906.1| DNA ligase [Hippea maritima DSM 10411]
          Length = 667

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/716 (35%), Positives = 409/716 (57%), Gaps = 66/716 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A++ +  L +++ YH+  YY    PII DSEYD + +    +  ++P      D N P 
Sbjct: 5   EAKERIEQLRKKLHYHNYRYYVLDDPIISDSEYDMMLKELKELEESYPQFY---DENSPT 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG       KV H IP LSLE  ++  D+R+F  ++ RF +  +D  I +++EPK D
Sbjct: 62  VRVGGAPLNKFEKVEHKIPMLSLEDGFDDNDIREFDRKVKRFLKLPEDKKIAYSVEPKFD 121

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYIS 194
           G  I + YE GK   A+ RGDG+ GE+V+  I+ I  +P VL ++ P + ++V+GEV ++
Sbjct: 122 GLSIDLIYENGKLTVASTRGDGYVGENVTQNIKTIRNVPLVLPIDTPPMYLDVQGEVLLT 181

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGL-GKTSEI 249
           K +F  +N E +  G   +ANPRNAA+G +R+L+P +  +     + +++  + G   +I
Sbjct: 182 KEEFERINQERLKNGLNVFANPRNAAAGSVRQLDPKETAKRNLIMIMYYIRQIEGYKRKI 241

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            +  Q++ L+ ++ +GFP ++  R        + Y  E++  R TLPY++DG+V KVD+F
Sbjct: 242 LS--QHDALEALKEMGFPTSSLNRLVVGIEEAIEYKKELEIKRETLPYELDGIVIKVDDF 299

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+ LG   +SPRW I+ KF  +QA+T++ DI++ +GRTGILTPVA LEPVNIGG +++
Sbjct: 300 ELQESLGATTKSPRWAIAFKFPAQQATTKIKDIEVNVGRTGILTPVAILEPVNIGGVVVS 359

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LH  D I+            +DIR+GD V V+RAG+VIP+VV  + + R    + F 
Sbjct: 360 RASLHTMDEIE-----------KKDIRIGDVVFVQRAGDVIPEVVKPVKDLRDGSEKKFV 408

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C SRVV+D         A +RC+  + C     E +KHFVSR A NI+G G +
Sbjct: 409 MPEKCPVCGSRVVKD--------GAYYRCS-NINCPKVLKESIKHFVSRKAMNIDGFGDK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRR 546
            ++      D      I ADI+ L +         E ++G    G+    NL  SI + +
Sbjct: 460 LIEQLV---DKGIVKNI-ADIYELDK---------ETLMGLDRVGEKLAENLISSIQRSK 506

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  +FI++LGIRHVG  +A+ LA+ + + +N  +   +           L+ +  +G+
Sbjct: 507 GTTFAKFIYALGIRHVGEFVAKLLAERFKNLENLKKATKD----------ELLAIDGIGE 556

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQR 663
            IA ++V F+  P+N+  ++ LL       G H ++ + E   I  K  VFTGTL K  R
Sbjct: 557 EIADSVVSFFSEPKNLQTIDKLL-----YYGIHFEDKTKEHSRIAGKSFVFTGTLSK-PR 610

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              +E + + G +V   +S+  D ++VG+NPGSKL+KA+Q GV +++EE+   LL+
Sbjct: 611 EYFKELIEERGGIVRNSVSKNLDYLVVGENPGSKLKKAKQNGVSVISEEELYRLLE 666


>gi|166215832|sp|Q5ZWX6|DNLJ_LEGPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 673

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/707 (36%), Positives = 391/707 (55%), Gaps = 54/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P+ P  +
Sbjct: 7   KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEPKID 135
           + G  + +   V H  P LSL  ++  ++L+ FI R     +K D+    + F  EPK+D
Sbjct: 64  VSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAI---EKLDEPNQQLVFACEPKLD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G   +AA RGDG  GE+++A I+ I ++P R+   N P++IEVRGEVYI 
Sbjct: 121 GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252
           K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G   +     
Sbjct: 181 KADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D  SLQ
Sbjct: 241 SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  ++NAT
Sbjct: 301 QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+    P 
Sbjct: 361 LHNFDEIT-----------RKDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPK 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG   +D
Sbjct: 410 NCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLID 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                 D      + AD++ L  +       + N+   G+ S  NL  ++ K +  +  R
Sbjct: 464 QLV---DEGIVHHL-ADLYELDLQ------TLANLPRMGEKSAKNLLSALEKSKKTTFNR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           F+++LGIR +G   AR LA++Y   ++  A  I  ++  N+           +G + A  
Sbjct: 514 FLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLND-----------IGPVAASH 562

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQE 668
           IV F+    N+  ++ LL E+     + EK   N  +    K +V TGTL  + R +A+ 
Sbjct: 563 IVHFFAQAHNLEVIDRLL-ELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKA 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL
Sbjct: 622 KLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFL 668


>gi|91784125|ref|YP_559331.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
 gi|123358676|sp|Q13XB0|DNLJ_BURXL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91688079|gb|ABE31279.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
          Length = 688

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 261/722 (36%), Positives = 398/722 (55%), Gaps = 51/722 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+   +     +  + L  E+   +  YY   +P + D+EYD L +  ++I    PDL  
Sbjct: 5   PVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLIV 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-- 125
              P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K       
Sbjct: 65  ---PDSPTQRVGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPPV 121

Query: 126 -IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPE 183
            + +  E K DG  I++RY  G FV A+ RGDG +GE+V+  +R I +IP R+    +P 
Sbjct: 122 PVEYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVPH 181

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVH 241
           +++VRGEV + K DF  LN+   A  +K +ANPRNAA+G LR+L+ + IT  R L+FF +
Sbjct: 182 VLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLD-SKITAQRPLSFFSY 240

Query: 242 GLGKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G+G    +     + E+L   + LG PVN      +   G++ +++ +   R  LPYDID
Sbjct: 241 GIGVLEGMDMPATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDID 300

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKV+    Q+ LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG +TPVARLEP
Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAVTPVARLEP 360

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ 
Sbjct: 361 VFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSALLDR 409

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+ F  P+ CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A
Sbjct: 410 RPDDAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRA 463

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GLG++ +D   +       +R PAD+F L          +  +  F + S  NL D
Sbjct: 464 LDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLD 513

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ K ++ +L RFI++LGIRHVG   A+ LAK++ S           +   ND       
Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVND------- 566

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGT 657
              VG ++A++I +F+    N   +E L    +   P      K     +  K +V TGT
Sbjct: 567 ---VGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPKAPQGVLAGKTVVLTGT 623

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R +A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    L
Sbjct: 624 LPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 683

Query: 718 LQ 719
           L+
Sbjct: 684 LE 685


>gi|254373281|ref|ZP_04988769.1| hypothetical protein FTCG_00864 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571007|gb|EDN36661.1| hypothetical protein FTCG_00864 [Francisella novicida GA99-3549]
          Length = 678

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 269/728 (36%), Positives = 409/728 (56%), Gaps = 65/728 (8%)

Query: 6   LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + P E  SI+    A+ EL +    L   +S     Y+   KPII DS+YD L R    +
Sbjct: 1   MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +  P     +  N  L+++GGE+      + H     SL  ++++E+LR F  +I    
Sbjct: 61  VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
               +  I    EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L+
Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169

Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
             N PE +EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L
Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229

Query: 237 NFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
             + +G+G  S+ F   + Q+E++  ++  GF +++ +  A  F  +  Y+++M   R+ 
Sbjct: 230 KLYSYGIGYFSKDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDGLV+KV+   LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TP
Sbjct: 290 LAYDIDGLVFKVNNIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG +++NATLHN + IK            +DIRV DRV+V+RAG+VIP+VV
Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVSDRVIVRRAGDVIPEVV 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R PDAQ    P+ CP+C S  + ++N +     A +RCTGG  C AQ  ERLKH
Sbjct: 399 KSLPQYRKPDAQVVEMPTSCPVCDS-AIENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I+ LG + ++        A  I+ PADI+ L   Q T   ++      G  S
Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFDQLTGLERM------GAKS 502

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N+ DSI K +  SL RFIF++GI+ VG   + +LA ++ S ++F +            
Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------K 552

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650
           +  LI +  +G+I+A  IV F+ +  NI  VE LL    K  +P    H  N S     K
Sbjct: 553 FEQLIEINDIGEIMANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNES--FTGK 610

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+ +   R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ 
Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670

Query: 711 EEQFLFLL 718
           E+    LL
Sbjct: 671 EDNLKDLL 678


>gi|221215451|ref|ZP_03588415.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
 gi|221164635|gb|EED97117.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
          Length = 691

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/708 (36%), Positives = 392/708 (55%), Gaps = 52/708 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L R    +    PDL     P+ P  ++GG + 
Sbjct: 20  LRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVT---PDSPTQRVGGAVA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  +D+  F  R+     K  D      + + +  E K DG 
Sbjct: 77  SGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE G FV A+ RGDG +GEDV+  +R I +IP ++    +P +++VRGEV + K 
Sbjct: 137 AISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGERVPAVLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254
           DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G    +      
Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L     LG PVN          G++ ++ ++   R +LPYDIDG+VYKV+    Q +
Sbjct: 257 SALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQDR 316

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ ++HKF  ++A T+L+ I +Q+GRTG +TPVARLEPV +GGA +TNATLH
Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATVTNATLH 376

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  P+ C
Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTEC 425

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D  
Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RFI
Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLKKAKHTTLARFI 529

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIRHVG   A+ LAK++ S       ++ I+    D+   L+ V  VG I+A++I +
Sbjct: 530 YALGIRHVGESTAKDLAKHFGS-------LDPIMNATIDE---LLEVNDVGPIVAESIHQ 579

Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           F+    N   +E L    K   P      K     +  K +V TGTL  + R  A+E + 
Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDDAKEMLE 639

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GA V+  +S+KTD +I G   GSKL KA+ LG+ +++E+    LL+
Sbjct: 640 AAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEALGIPVLDEDGLHQLLE 687


>gi|52841193|ref|YP_094992.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628304|gb|AAU27045.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 683

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/707 (36%), Positives = 391/707 (55%), Gaps = 54/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P+ P  +
Sbjct: 17  KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 73

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEPKID 135
           + G  + +   V H  P LSL  ++  ++L+ FI R     +K D+    + F  EPK+D
Sbjct: 74  VSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAI---EKLDEPNQQLVFACEPKLD 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G   +AA RGDG  GE+++A I+ I ++P R+   N P++IEVRGEVYI 
Sbjct: 131 GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP 190

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252
           K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G   +     
Sbjct: 191 KADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN 250

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D  SLQ
Sbjct: 251 SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ 310

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  ++NAT
Sbjct: 311 QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT 370

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+    P 
Sbjct: 371 LHNFDEIT-----------RKDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPK 419

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG   +D
Sbjct: 420 NCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLID 473

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                 D      + AD++ L  +       + N+   G+ S  NL  ++ K +  +  R
Sbjct: 474 QLV---DEGIVHHL-ADLYELDLQ------TLANLPRMGEKSAKNLLSALEKSKKTTFNR 523

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           F+++LGIR +G   AR LA++Y   ++  A  I  ++  N+           +G + A  
Sbjct: 524 FLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLND-----------IGPVAASH 572

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQE 668
           IV F+    N+  ++ LL E+     + EK   N  +    K +V TGTL  + R +A+ 
Sbjct: 573 IVHFFAQAHNLEVIDRLL-ELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKA 631

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL
Sbjct: 632 KLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFL 678


>gi|320196260|gb|EFW70884.1| DNA ligase [Escherichia coli WV_060327]
          Length = 671

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/715 (35%), Positives = 408/715 (57%), Gaps = 56/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    +  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G 
Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAVKLTGLERMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG 
Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++A  +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R
Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|300940348|ref|ZP_07154941.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
 gi|300454839|gb|EFK18332.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
          Length = 671

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 410/712 (57%), Gaps = 50/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             +  F+    N   + ALL E       I  + + + S    K +V TG+L ++ R  A
Sbjct: 558 SHVHNFFAEESNRNVISALLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 618 KARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|166216286|sp|A0KVI4|DNLJ_SHESA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 689

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/717 (35%), Positives = 406/717 (56%), Gaps = 55/717 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++   A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    ++
Sbjct: 16  QAVTPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAAD 75

Query: 70  DPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P     ++GG M L+ F ++TH  P LSL+  ++  D   F  R+           + F
Sbjct: 76  SPT---QRVGG-MALAKFEQITHLKPMLSLDNAFDEADFSAFHKRV-----SDRVGEVSF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187
             EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP ++   N PE++EV
Sbjct: 127 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244
           RGE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG  
Sbjct: 187 RGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 246

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             TS   AK  YE LQ+++  G PV++ ++  +    + +YY ++ + R+ LP++IDG+V
Sbjct: 247 EPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +
Sbjct: 307 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN D I  L            + VGD V+++RAG+VIP++V I+   R  
Sbjct: 367 GGVTVSNATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPE 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+  +FP  CP+C S V R      G+ VA  RC+GGL C AQ+ E +KHF SR A +I
Sbjct: 416 DAKAIAFPQHCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDI 469

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I 
Sbjct: 470 DGMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GIKSATNLALAIE 519

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIR VG   A +LA ++ S +  A  +  I          LI+V  
Sbjct: 520 AAKTTTLPRFLYALGIREVGETTAANLATHFGSLE--ALRVATI--------EQLIQVED 569

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           +G+++AQ +  F+  P N+  ++AL+      P+I     +    ++ +  V TGTL ++
Sbjct: 570 IGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIAAPSAD-EQPLKGQTWVLTGTLNQL 628

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL
Sbjct: 629 NRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685


>gi|29140957|ref|NP_804299.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213160907|ref|ZP_03346617.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424270|ref|ZP_03357114.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213583650|ref|ZP_03365476.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213650852|ref|ZP_03380905.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|29136582|gb|AAO68148.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 671

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 408/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++
Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKATT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ R  
Sbjct: 558 THVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INAQEIDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|206560458|ref|YP_002231222.1| DNA ligase [Burkholderia cenocepacia J2315]
 gi|254781275|sp|B4ECN6|DNLJ_BURCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|198036499|emb|CAR52396.1| DNA ligase [Burkholderia cenocepacia J2315]
          Length = 691

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 260/709 (36%), Positives = 397/709 (55%), Gaps = 54/709 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L R    +    P+L     P+ P  ++GGE  
Sbjct: 20  LRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVT---PDSPTQRVGGEAA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  ED+  F  R+     K  D      + + +  E K DG 
Sbjct: 77  GGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKATDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE G FV AA RGDG +GEDV+  +R I +IP ++   ++P +++VRGEV + K 
Sbjct: 137 AISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKG 253
           DF  LN+   A  ++ +ANPRNAA+G LR+L+ + IT  R L+FF +G+G    +     
Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMPMPDT 255

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              +L      G PVN      +   G++ ++ ++   R +LPYDIDG+VYKV+    Q+
Sbjct: 256 HTALLDWYEAFGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQE 315

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATL
Sbjct: 316 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 375

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  P+ 
Sbjct: 376 HNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTE 424

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D 
Sbjct: 425 CPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQ 478

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RF
Sbjct: 479 LVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARF 528

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIRHVG   A+ LAK++ S       +  I+  + ++   L+ V  VG I+A++I 
Sbjct: 529 IYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESIH 578

Query: 614 EFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +F+    N   +E L    K   P      K     +  K +V TGTL  + R  A+E +
Sbjct: 579 QFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEML 638

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 639 EAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|54293931|ref|YP_126346.1| DNA ligase [Legionella pneumophila str. Lens]
 gi|81368949|sp|Q5WXV3|DNLJ_LEGPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53753763|emb|CAH15221.1| DNA ligase [Legionella pneumophila str. Lens]
          Length = 673

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/707 (36%), Positives = 390/707 (55%), Gaps = 54/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P+ P  +
Sbjct: 7   KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEPKID 135
           + G  + +   V H  P LSL  ++  ++L+ FI R     +K D+    + F  EPK+D
Sbjct: 64  VSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAI---EKLDEPNQQLVFACEPKLD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G   +AA RGDG  GE+++A I+ I ++P R+   N P++IEVRGEVYI 
Sbjct: 121 GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252
           K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G   +     
Sbjct: 181 KADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D  SLQ
Sbjct: 241 SHLEQLNLLKEFGFRVSPETRRAVGIEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  ++NAT
Sbjct: 301 QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+    P 
Sbjct: 361 LHNFDEIT-----------RKDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPK 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG   +D
Sbjct: 410 NCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLID 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                 D      + AD++ L  +   S  ++      G+ S  NL  ++ K +  +  R
Sbjct: 464 QLV---DEGIVHHL-ADLYELDLQTLASLPRM------GEKSAKNLLSALEKSKKTTFNR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           F+++LGIR +G   AR LA++Y   +   A  I  ++  N+           +G + A  
Sbjct: 514 FLYALGIREIGEAGARVLAEHYCDVEGLKAATIEELMTLND-----------IGPVAASH 562

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +V F+    N+  ++ LL E+     + EK   N  +    K +V TGTL  + R +A+ 
Sbjct: 563 VVHFFAQAHNLEVIDRLL-ELGIHWPKSEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKA 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL
Sbjct: 622 KLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFL 668


>gi|117920017|ref|YP_869209.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3]
 gi|117612349|gb|ABK47803.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3]
          Length = 691

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/717 (35%), Positives = 406/717 (56%), Gaps = 55/717 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++   A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    ++
Sbjct: 18  QAVTPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAAD 77

Query: 70  DPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P     ++GG M L+ F ++TH  P LSL+  ++  D   F  R+           + F
Sbjct: 78  SPT---QRVGG-MALAKFEQITHLKPMLSLDNAFDEADFSAFHKRV-----SDRVGEVSF 128

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187
             EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP ++   N PE++EV
Sbjct: 129 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEV 188

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244
           RGE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG  
Sbjct: 189 RGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 248

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             TS   AK  YE LQ+++  G PV++ ++  +    + +YY ++ + R+ LP++IDG+V
Sbjct: 249 EPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVV 308

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +
Sbjct: 309 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 368

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN D I  L            + VGD V+++RAG+VIP++V I+   R  
Sbjct: 369 GGVTVSNATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPE 417

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+  +FP  CP+C S V R      G+ VA  RC+GGL C AQ+ E +KHF SR A +I
Sbjct: 418 DAKAIAFPQHCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDI 471

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I 
Sbjct: 472 DGMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GIKSATNLALAIE 521

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIR VG   A +LA ++ S +  A  +  I          LI+V  
Sbjct: 522 AAKTTTLPRFLYALGIREVGETTAANLATHFGSLE--ALRVATI--------EQLIQVED 571

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           +G+++AQ +  F+  P N+  ++AL+      P+I     +    ++ +  V TGTL ++
Sbjct: 572 IGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIAAPSAD-EQPLKGQTWVLTGTLNQL 630

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL
Sbjct: 631 NRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 687


>gi|281179485|dbj|BAI55815.1| DNA ligase [Escherichia coli SE15]
          Length = 671

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/715 (35%), Positives = 408/715 (57%), Gaps = 56/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    +  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G 
Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG 
Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++A  +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R
Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|299771367|ref|YP_003733393.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1]
 gi|298701455|gb|ADI92020.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1]
          Length = 679

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 266/721 (36%), Positives = 395/721 (54%), Gaps = 59/721 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ R+    L Q I+ H+  YY   +P I DSEYD L  +  A+   +PD  +S+ P  
Sbjct: 7   IEQMRQ----LIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDQVQSDSPT- 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              K+GG+       VTH +P LSL  ++N EDL  F  R+    ++  +  + + +E K
Sbjct: 62  --TKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVELK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGE 190
           +DG  I++ YE G  +    RGDG +GED++  ++ I  +P+VL      IP ++EVRGE
Sbjct: 117 LDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V + K+ F  LN +  A G K +ANPRNAA+G LR+L+P    +R L F+ +G+ +    
Sbjct: 177 VLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPN 236

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KVD+
Sbjct: 237 HNLTTMHDSLQWLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKVDD 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG  +
Sbjct: 297 LKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R P+A+  
Sbjct: 357 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRSPEAEIV 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGLG 
Sbjct: 406 HLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGD 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +  
Sbjct: 460 RWVESLLHLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASKKT 511

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIR VG   AR LA  + + +          A    D  +L + P VGDI 
Sbjct: 512 TLARFIYALGIRGVGETTARMLANTFQTLE----------ALKAADVEALKKTPDVGDIT 561

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664
           A+ I +F+  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ R 
Sbjct: 562 AEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRD 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  T
Sbjct: 617 QATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQT 676

Query: 725 L 725
           L
Sbjct: 677 L 677


>gi|215487666|ref|YP_002330097.1| NAD-dependent DNA ligase LigA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967700|ref|ZP_07781915.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
 gi|254781317|sp|B7UGB2|DNLJ_ECO27 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|215265738|emb|CAS10145.1| DNA ligase, NAD(+)-dependent [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312287897|gb|EFR15802.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
          Length = 671

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/715 (35%), Positives = 407/715 (56%), Gaps = 56/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L  L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    +  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V    +   ++++Y+E++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G 
Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAVKLTGLERMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG 
Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++A  +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R
Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|320180401|gb|EFW55332.1| DNA ligase [Shigella boydii ATCC 9905]
          Length = 671

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 410/712 (57%), Gaps = 50/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             +  F+    N   +  LL E    S  I  + + + S    K +V TG+L ++ R  A
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 618 KARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|313201136|ref|YP_004039794.1| DNA ligase, nad-dependent [Methylovorus sp. MP688]
 gi|312440452|gb|ADQ84558.1| DNA ligase, NAD-dependent [Methylovorus sp. MP688]
          Length = 689

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 265/724 (36%), Positives = 389/724 (53%), Gaps = 64/724 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L ++I+ ++  YY    P + DSEYD L R   A+ HA P+L     P+ P  ++G
Sbjct: 17  QIRQLREQINLYNYQYYVLDDPSVPDSEYDKLFRELQALEHAHPELLT---PDSPTQRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                +   V H    LSL   +   +L  F  RI           + + +EPK DG  I
Sbjct: 74  ASPLKAFASVQHRQAMLSLNNAFEESELTAFDKRIRDALGIA---QVEYAVEPKFDGLAI 130

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           T+ YE G FV  A RGDG++GEDVS+ +R I  IP  L + N P +IEVRGEV + K DF
Sbjct: 131 TLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEVRGEVLMLKRDF 190

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN +    G K +ANPRNAA+G LR+L+P    TR L FF +GLG    +     +  
Sbjct: 191 DKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIAEGVPQLSTHAA 250

Query: 258 -LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +  +  L  PV++         G++ YY  + + R  LP+DIDG+VYKV+  + Q +LG
Sbjct: 251 AMDYLASLRLPVSDQRDTVQGLAGLLDYYARIGAARPNLPFDIDGVVYKVNSIAQQNELG 310

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW ++HKF  ++A T +  ID+Q+GRTG +TPVARL+PV +GG  +TNATLHN+
Sbjct: 311 FVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGGVTVTNATLHNQ 370

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF----SFPS 432
           D I             +D+RVGD V V+RAG+VIP+VV +++ +R  D   +    +   
Sbjct: 371 DEID-----------RKDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYRLLEAINH 419

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S V+R  +       A  RCTGGL CSAQ+ + + HF SR A +IEGLG++ +D
Sbjct: 420 QCPVCGSHVIRQEDE------AVARCTGGLFCSAQRKQAVLHFASRRAIDIEGLGEKLVD 473

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      I   ADI+ L     +S  ++       + S  N+ D++   +  +L R
Sbjct: 474 QLVDGA----HIHTLADIYRLDLATLSSLDRM------AEKSAQNILDALQASKATTLAR 523

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGIR+VG   A+ LA+Y+ S Q               D   L +VP VG I+A++I
Sbjct: 524 FIYALGIRNVGEATAKDLARYFGSLQALLAA----------DIEQLQQVPDVGPIVAESI 573

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKA 666
            +F   P N   ++ L       +G H             +  K LV TGTL  + R +A
Sbjct: 574 RQFLSEPHNQQVIQDL-----QDVGLHWTESDGAGTQQGVLTGKTLVLTGTLPTMSRDQA 628

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +  +   G  V+  +S+KTD ++ G+  GSKL KAQ+LGV +++E   L LL+    +  
Sbjct: 629 KALIEAAGGKVAGSVSKKTDFVVAGEEAGSKLTKAQELGVAVIDENGLLALLEDKQAS-- 686

Query: 727 IHDD 730
            HDD
Sbjct: 687 -HDD 689


>gi|78223924|ref|YP_385671.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15]
 gi|123756373|sp|Q39S28|DNLJ_GEOMG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78195179|gb|ABB32946.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15]
          Length = 671

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 258/710 (36%), Positives = 388/710 (54%), Gaps = 54/710 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + ++ L  EI  HD  YY   +P + D+EYDAL R    +    P+L     P+ P  
Sbjct: 6   AERRIAELRAEIRRHDHLYYVLDRPELTDAEYDALYRELLKLEEEHPELV---TPDSPSR 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG       +VTH IP LSLE  +   D+ +F  R+ R         I +  EPK+DG
Sbjct: 63  RVGGAPLEKFKQVTHRIPMLSLENAFTDGDIAEFDARVKRALALPAGEEIAYVCEPKLDG 122

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             + + YE G     + RGDG  GE+V+  ++ + +IP R+   N PE++EVRGEV++  
Sbjct: 123 LAVELVYEYGTLTVGSTRGDGVVGENVTQNLKTVKSIPLRLEGENPPELLEVRGEVFLPL 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG 253
             F  LN +    G  P+ANPRNAA+G LR+L+ + IT  R L  F +  G+        
Sbjct: 183 AAFQRLNAQREEEGEPPFANPRNAAAGSLRQLD-SRITARRPLTMFCYAPGEIRGADFGS 241

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q E L  +R  G PV +  RQ     G+++YY EM   R TLPY+IDG+V KVD F LQ+
Sbjct: 242 QGEFLSALRQRGLPVTSLARQVTGVAGVLAYYREMTEKRDTLPYEIDGVVVKVDSFPLQR 301

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LGE++RSPRW ++ KF  +QA T + DI   +GRTG++TP A L PV + G  ++ ATL
Sbjct: 302 ELGEKSRSPRWAVAVKFPPRQAVTVIEDIVPSVGRTGVITPTANLRPVEVSGVTVSRATL 361

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN + ++            +DIR+GD V+++RAG+VIP VV ++  +R    +    P+ 
Sbjct: 362 HNWEEME-----------RKDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERFLPIPAA 410

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S VV+  +        A RC  GL+C AQ  E + HF SR+A ++EGLG++ ++ 
Sbjct: 411 CPECGSEVVKIPDE------VAVRCM-GLSCPAQIRESIIHFASRNAMDMEGLGEKYIEQ 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISL 550
             +       +   AD++TL R         ++ + F   G+    NL ++I   +   L
Sbjct: 464 LLR----LGLVGNVADLYTLTR---------DDFMKFDRMGEKLAENLLNAIEASKKREL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIRHVG   A+ LA  + S  N A+               L+ +  +G  +AQ
Sbjct: 511 SRFIFALGIRHVGEHTAKLLATAFGSIDNLARATEA----------ELLSIREIGPQVAQ 560

Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I  F+ N  N   +  +++  V P++   EK V  +   K  VFTGTL +  R +AQ+ 
Sbjct: 561 SITTFFHNEGNRETIRRMVEAGVEPTV--EEKKVGGKFTGKTFVFTGTLIRFSRSEAQKM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   G   +  +S+KTD ++ GD  GSKL+KA+QLGV ++ E++FL +L+
Sbjct: 619 VESEGGHAAGSVSKKTDYVVAGDEAGSKLDKARQLGVTVLAEDEFLQMLE 668


>gi|16077730|ref|NP_388544.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221308499|ref|ZP_03590346.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221312822|ref|ZP_03594627.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221317746|ref|ZP_03599040.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221322025|ref|ZP_03603319.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|7673987|sp|O31498|DNLJ_BACSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2632976|emb|CAB12482.1| DNA ligase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 668

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 410/712 (57%), Gaps = 53/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A++    L + I+ +   YY   +P + D+EYD L +   AI    PDL     P+ P
Sbjct: 4   ETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTPDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +  +  KVTH  P LSL   +N +DLR F  R+    ++   + + + +E KI
Sbjct: 61  TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRV----RQSVGDDVAYNVELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I  IP  L +N    IEVRGE Y+ 
Sbjct: 117 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIP--LKMNRELSIEVRGEAYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F ALN+E I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+  + 
Sbjct: 175 KRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + L  +  LGF  N   ++  +   +++  +E+++ R+ LPY+IDG+V KVD    Q+
Sbjct: 235 QSQGLDFLDELGFKTNQERKKCGSIEEVITLIDELQAKRADLPYEIDGIVIKVDSLDQQE 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+L
Sbjct: 295 ELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED IK            +DIR+ D+V+VK+AG++IP+VV+++V++R  + + FS P+ 
Sbjct: 355 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVDQRTGEEKEFSMPTE 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ +  
Sbjct: 404 CPECGSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+       +R  AD++ L + +     ++      G+ S  NL  SI K +  SLER 
Sbjct: 457 LFEEN----LVRNVADLYKLTKERVIQLERM------GEKSTENLISSIQKSKENSLERL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR +G++ A++LA ++ S +N  +               L+ V  +G+ +A A++
Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFESLENLKKASKE----------ELLAVDEIGEKMADAVI 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668
            ++     +  +  L +    ++ +  K V +E        K +V TG L+++ R++A+ 
Sbjct: 557 TYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKA 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  ++  +S+ TD++I G+  GSKL KAQ+L +++ NEEQ +  L++
Sbjct: 617 QIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668


>gi|296104078|ref|YP_003614224.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058537|gb|ADF63275.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 671

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/719 (35%), Positives = 408/719 (56%), Gaps = 61/719 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SIEQ   +++ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+
Sbjct: 3   SIEQ---QITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRDLEAQHPELI---TPD 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G E   +  +V H +P LSL+ +++ E    F  R+    + K  +++ +  E 
Sbjct: 57  SPTQRVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSSDALTWCCEL 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  ++I YE G  V AA RGDG +GED++  +R I  IP ++   NIP  +EVRGEV
Sbjct: 115 KLDGLAVSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           ++ +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I 
Sbjct: 175 FLPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----IL 230

Query: 251 AKGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             G+        L + +  G PV+N V+  ++   ++++Y +++  R TL +DIDG+V K
Sbjct: 231 EGGELPDTHLGRLLQFKAWGLPVSNRVQLCDSPEAVLAFYRKVEEDRPTLGFDIDGVVIK 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G
Sbjct: 291 VNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            L++NATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  D 
Sbjct: 351 VLVSNATLHNADEIDRL-----------GLRIGDKVVIRRAGDVIPQVVNVVQSERPDDT 399

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +   FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G
Sbjct: 400 RAIVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDG 453

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++   
Sbjct: 454 MGDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLDRMGPKSAQNVVNALEAA 503

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +  RF+++LGIR VG   A  LA Y+            + A        L +VP VG
Sbjct: 504 KETTFARFLYALGIREVGEATAAGLAAYF----------GTLDALEKASIEELQKVPDVG 553

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            ++A  +  F+    N   +  LL++     +P +   E+ + S    K +V TG+L ++
Sbjct: 554 IVVATHVFNFFAEESNRDVIGKLLEQGIKWPAPVVVNAEE-IDSPFAGKTVVLTGSLSQL 612

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 613 SRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|118594798|ref|ZP_01552145.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
 gi|118440576|gb|EAV47203.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
          Length = 671

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 262/709 (36%), Positives = 412/709 (58%), Gaps = 52/709 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ L  L++ IS H+  YY    P+I D+E+D +     AI    P+L   + P     +
Sbjct: 8   KERLVDLKKLISEHNYHYYVLDNPLISDAEFDKIFLEIKAIEDLNPELITIDSPT---QR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE N S  ++TH  P LSL   ++ +DL  F  RI    ++    +I +  EPK DG 
Sbjct: 65  VGGEPNKSFKQITHQRPMLSLGNAFDEKDLDVFDKRIR---EELGVANISYVAEPKFDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVYISKN 196
            +TI Y  G+   AA RGDG  GEDV+  I+ I +IP  L  N P   IE+RGEV + KN
Sbjct: 122 AVTIVYVDGELHLAATRGDGSVGEDVTHNIKTIKSIPLKLPSNSPAGQIEIRGEVIMLKN 181

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           DF+ LN   +    K +ANPRNAA+G LR+L+PT   +R L+F+ + +   ++  A  Q 
Sbjct: 182 DFIGLNKRQLEANEKVFANPRNAAAGSLRQLDPTIAASRPLSFYAYSIFCDNKTLA-SQE 240

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L  ++ L  P +N  ++ +   G++ +YN + + R +LP+DIDG+VYKV+  ++Q +L
Sbjct: 241 EGLDLLKQLLIPTSNLTKRVDGVRGMIDFYNAINNARKSLPFDIDGVVYKVNSLNMQDEL 300

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I+HKFA ++A T + DI++Q+GRTG +TPVARL PV + G  +TNATLHN
Sbjct: 301 GFVSRAPRWAIAHKFAAEEAMTTIKDINVQVGRTGSITPVARLMPVVVAGVTVTNATLHN 360

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED ++            +DI +GD V+V+RAG+V+P+V+ ++  +R  D + F  P+ CP
Sbjct: 361 EDELR-----------RKDIHIGDFVMVRRAGDVVPEVIKVVHEKRPNDIKKFEMPTLCP 409

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR+     G+ V   RC  G+ C AQ+ + + HF SR A +I+GLG++ +D   
Sbjct: 410 ECSNVLVRE----EGESVL--RCNAGMLCPAQRKQSIMHFASRKAMDIDGLGEKIIDQLI 463

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +S     S+   +D++T++      T K+  +  F   S  NL +SI K +  +L +FI+
Sbjct: 464 ESS-LVLSV---SDLYTVK------TEKLLKLDRFAKKSAENLIESIEKSKKTTLGKFIY 513

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR+VG   A  LAK + S       I+ I++ + +   SL+ +  +G  +A +I  +
Sbjct: 514 ALGIRNVGEATAYDLAKQFGS-------IDKIMSASKE---SLLSIHDIGPTVATSIQNY 563

Query: 616 YQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +    N   V  LLKE     S  +G  E  +S+E+E    V TGTL  ++R +A+  + 
Sbjct: 564 FNEDTNREQVAILLKEGIQWDSIEVGAEE--ISNELEGLVFVLTGTLTSLKRDEAKNLIL 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             G  VS  +S+KTD +I G + GSKL+KA  LGVK++ E++ + L ++
Sbjct: 622 SCGGKVSGSVSKKTDYVIAGLDAGSKLDKASALGVKVIGEDELIQLTKK 670


>gi|168817829|ref|ZP_02829829.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205345161|gb|EDZ31925.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086917|emb|CBY96687.1| DNA ligase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 671

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/714 (35%), Positives = 408/714 (57%), Gaps = 54/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++
Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKATT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDII 608
             RF+++LGIR VG   A  LA Y+ + +   A  I+            L +VP VG ++
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE-----------LQKVPDVGIVV 556

Query: 609 AQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ R 
Sbjct: 557 ATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLNQMSRD 615

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            A+E +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 616 DAKERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669


>gi|172060972|ref|YP_001808624.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
 gi|254781273|sp|B1YSH2|DNLJ_BURA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171993489|gb|ACB64408.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
          Length = 691

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/708 (36%), Positives = 393/708 (55%), Gaps = 52/708 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L      +    PDL     P+ P  ++GGE+ 
Sbjct: 20  LRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLVT---PDSPTQRVGGEVA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  ED+  F  R+     K  D      + + +  E K DG 
Sbjct: 77  GGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE G FV A+ RGDG +GEDV+  +R I +IP ++   ++P +++VRGEV + K 
Sbjct: 137 AISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254
           DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G    +      
Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L      G PVN          G++ ++ ++   R +LPYDIDG+VYKV+    Q +
Sbjct: 257 SALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVNRRDEQDR 316

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH
Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 376

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +DIR+GD V+V+RAG+VIP+VV  ++  R  DA  F  P+ C
Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLERRPDDAAEFVMPTEC 425

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D  
Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RFI
Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIRHVG   A+ LAK++ S       +  I+  + ++   L+ V  VG I+A++I +
Sbjct: 530 YGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESIHQ 579

Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           F+    N   +E L    K   P      K     +  K +V TGTL  + R  A+E + 
Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLE 639

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E+    LL+
Sbjct: 640 AAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|82777805|ref|YP_404154.1| NAD-dependent DNA ligase LigA [Shigella dysenteriae Sd197]
 gi|309784866|ref|ZP_07679499.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
 gi|123728534|sp|Q32DE2|DNLJ_SHIDS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81241953|gb|ABB62663.1| DNA ligase [Shigella dysenteriae Sd197]
 gi|308927236|gb|EFP72710.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
          Length = 671

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/713 (35%), Positives = 412/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTILAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  + SE+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGSEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++ +Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLVFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D++   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDSREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|56708436|ref|YP_170332.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670907|ref|YP_667464.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198]
 gi|134301572|ref|YP_001121540.1| DNA ligase [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187931418|ref|YP_001891402.1| DNA ligase, NAD-dependent [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224457588|ref|ZP_03666061.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254875281|ref|ZP_05247991.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|81597232|sp|Q5NF60|DNLJ_FRATT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123063401|sp|Q14GL3|DNLJ_FRAT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215759|sp|A4IWW8|DNLJ_FRATW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781335|sp|B2SFT1|DNLJ_FRATM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56604928|emb|CAG46020.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321240|emb|CAL09403.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198]
 gi|134049349|gb|ABO46420.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|187712327|gb|ACD30624.1| DNA ligase, NAD-dependent [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254841280|gb|EET19716.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159628|gb|ADA79019.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 678

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 267/728 (36%), Positives = 410/728 (56%), Gaps = 65/728 (8%)

Query: 6   LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + P E  SI+    A+ EL +    L   +S     Y+   KPII DS+YD L R    +
Sbjct: 1   MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +  P     +  N  L+++GGE+      + H     SL  ++++E+LR F  +I    
Sbjct: 61  VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
               +  I    EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L+
Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169

Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
             N PE +EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L
Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229

Query: 237 NFFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
             + +G+G  S+  ++ + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ 
Sbjct: 230 KLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDGLV+KV+   LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TP
Sbjct: 290 LAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG +++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV
Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVV 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R  DAQ    P+ CP+C S+ + ++N +     A +RCTGG  C AQ  ERLKH
Sbjct: 399 KSLPQYRKSDAQMVEMPTNCPVCDSK-IENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I+ LG + ++        A  I+ PADI+ L   Q T   ++         S
Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFEQLTGLERM------AAKS 502

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N+ DSI K +  SL RFIF++GI+ +G   + +LA ++ S ++F           +  
Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDALANHFGSLESF----------RDAK 552

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650
           +  LI +  +G+I+A  IV F+ +  NI  VE  L    K  +P    H  N S     K
Sbjct: 553 FEELIEINDIGEIMANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNES--FTGK 610

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+ +   R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ 
Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670

Query: 711 EEQFLFLL 718
           E+    LL
Sbjct: 671 EDNLKDLL 678


>gi|320185101|gb|EFW59881.1| DNA ligase [Shigella flexneri CDC 796-83]
          Length = 671

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/713 (35%), Positives = 412/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++IVG+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIVGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|288941063|ref|YP_003443303.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
 gi|288896435|gb|ADC62271.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
          Length = 696

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/721 (35%), Positives = 394/721 (54%), Gaps = 54/721 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + + +L  EI YH+  YY    P I D+EYD L      +    P L     P+ P  ++
Sbjct: 8   QRIEALRAEIRYHNHRYYVLDDPEIPDAEYDRLFAELQQLEAEHPALI---TPDSPTQRV 64

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E    L +V H++P +SL+   + E L +F  R+     + D   + +T EPK DG  
Sbjct: 65  GAEPRPELGEVRHAVPMISLDNAMSDERLVEFHRRLTVALPEFD--PVLYTAEPKFDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           IT+RYE G  V AA RGDG  GEDV+   R IP +P R+L  + PE++EVRGEVY+ +  
Sbjct: 123 ITLRYESGVLVLAATRGDGTRGEDVTHNARTIPNVPLRLLGEDWPEVLEVRGEVYMPRAG 182

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN  +   G +P+ANPRNAA+G LR+L+P     R L F  +G G+ +    + Q+E
Sbjct: 183 FDRLNARLEERGERPFANPRNAAAGSLRQLDPRVTARRPLRFCAYGWGEIAGEPGESQFE 242

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           MLQ++   G P++  +RQ     G   Y+  +   R+TL YDIDG+V+K+D  S Q  LG
Sbjct: 243 MLQRLAGWGLPISPELRQVAGLDGCRDYFEALGRRRATLDYDIDGVVFKLDRLSAQTALG 302

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A  PRW I+ KF  ++A T +  ++ Q+GRTG +TPVARL PV +GG  ++ ATLHN 
Sbjct: 303 ATAHHPRWAIARKFPAQEALTEVEAVEFQVGRTGAVTPVARLRPVQVGGVTVSKATLHNL 362

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++            +D+R+GD V ++RAG+VIP++V ++V  R   A+    P+ CP+
Sbjct: 363 DEVR-----------RKDVRIGDSVYIRRAGDVIPEIVRVLVERRPDGARLVELPTQCPV 411

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V+R      G+ VA  RC+GGL C AQ+ E ++HF +R A +IEGLG++ ++    
Sbjct: 412 CGSDVIR----PEGEAVA--RCSGGLWCPAQRKEAIRHFAARRALDIEGLGEKLIEQLVD 465

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     +R PAD++ L      +  ++  +   G+ S  NL  ++   +  +L RF+F+
Sbjct: 466 LE----WVREPADLYRL------TADRLALLERMGEKSAANLIAALEHSKRTTLARFVFA 515

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A+ LA++          I  ++A + +D   L+ +  +G ++A  IV F 
Sbjct: 516 LGIREVGETTAQLLAEHVGG-------IEALMAASVED---LVAIKGIGPVVAAHIVGFM 565

Query: 617 QNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
               N  A+  LL       EV  S     +  ++ +  K  V TGTL +  R +    +
Sbjct: 566 AQAHNREAIAHLLAAGIHWPEVERSDSMPAEPSAAPLTGKTFVITGTLSR-PREEFAARL 624

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
             LGA V+  +S+KTD ++ G   GSKL KA+ LGV +++E     L+ +      +H D
Sbjct: 625 QGLGAKVTGSVSKKTDYLLAGAEAGSKLAKAEALGVVVIDEAGLESLIARLQA---LHGD 681

Query: 731 D 731
           D
Sbjct: 682 D 682


>gi|254368889|ref|ZP_04984902.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022]
 gi|157121810|gb|EDO65980.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022]
          Length = 678

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 267/728 (36%), Positives = 410/728 (56%), Gaps = 65/728 (8%)

Query: 6   LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + P E  SI+    A+ EL +    L   +S     Y+   KPII DS+YD L R    +
Sbjct: 1   MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +  P     +  N  L+++GGE+      + H     SL  ++++E+LR F  +I    
Sbjct: 61  VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
               +  I    EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L+
Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169

Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
             N PE +EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L
Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229

Query: 237 NFFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
             + +G+G  S+  ++ + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ 
Sbjct: 230 KLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDGLV+KV+   LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TP
Sbjct: 290 LAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG +++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV
Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVV 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R  DAQ    P+ CP+C S+ + ++N +     A +RCTGG  C AQ  ERLKH
Sbjct: 399 KSLPQYRKSDAQIVEMPTNCPVCDSK-IENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I+ LG + ++        A  I+ PADI+ L   Q T   ++         S
Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFEQLTGLERM------AAKS 502

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N+ DSI K +  SL RFIF++GI+ +G   + +LA ++ S ++F           +  
Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDALANHFGSLESF----------RDAK 552

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650
           +  LI +  +G+I+A  IV F+ +  NI  VE  L    K  +P    H  N S     K
Sbjct: 553 FEELIEINDIGEIMANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNES--FTGK 610

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+ +   R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ 
Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670

Query: 711 EEQFLFLL 718
           E+    LL
Sbjct: 671 EDNLKDLL 678


>gi|161524425|ref|YP_001579437.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616]
 gi|189350820|ref|YP_001946448.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
 gi|254781276|sp|A9AIK9|DNLJ_BURM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160341854|gb|ABX14940.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616]
 gi|189334842|dbj|BAG43912.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
          Length = 691

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 260/708 (36%), Positives = 392/708 (55%), Gaps = 52/708 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L R    +    PDL     P+ P  ++GG + 
Sbjct: 20  LRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVT---PDSPTQRVGGAVA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  +D+  F  R+     K  D      + + +  E K DG 
Sbjct: 77  SGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196
            I++RYE G FV A+ RGDG +GEDV+  +R I +IP  L  + +P +++VRGEV + K 
Sbjct: 137 AISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGDRVPAVLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254
           DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G    +      
Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L     LG PVN          G++ ++ ++   R +LPYDIDG+VYKV+    Q +
Sbjct: 257 SALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQDR 316

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ ++HKF  ++A T+L+ I +Q+GRTG +TPVARLEPV +GGA +TNATLH
Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATVTNATLH 376

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  P+ C
Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTEC 425

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D  
Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RFI
Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIRHVG   A+ LAK++ S       ++ I+    D+   L+ V  VG I+A++I +
Sbjct: 530 YALGIRHVGESTAKDLAKHFGS-------LDPIMNATIDE---LLEVNDVGPIVAESIHQ 579

Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           F+    N   +E L    K   P      K     +  K +V TGTL  + R  A+E + 
Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDDAKEMLE 639

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GA V+  +S+KTD +I G   GSKL KA+ LG+ +++E+    LL+
Sbjct: 640 AAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEALGIPVLDEDGLHQLLE 687


>gi|91211748|ref|YP_541734.1| NAD-dependent DNA ligase LigA [Escherichia coli UTI89]
 gi|117624619|ref|YP_853532.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
 gi|218559359|ref|YP_002392272.1| NAD-dependent DNA ligase LigA [Escherichia coli S88]
 gi|237704934|ref|ZP_04535415.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
 gi|331658566|ref|ZP_08359510.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
 gi|123084405|sp|Q1R8W1|DNLJ_ECOUT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215402|sp|A1ADS8|DNLJ_ECOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781318|sp|B7MHR5|DNLJ_ECO45 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91073322|gb|ABE08203.1| DNA ligase [Escherichia coli UTI89]
 gi|115513743|gb|ABJ01818.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
 gi|218366128|emb|CAR03873.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88]
 gi|226901300|gb|EEH87559.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
 gi|294491726|gb|ADE90482.1| DNA ligase, NAD-dependent [Escherichia coli IHE3034]
 gi|307626016|gb|ADN70320.1| NAD-dependent DNA ligase LigA [Escherichia coli UM146]
 gi|315288164|gb|EFU47564.1| DNA ligase, NAD-dependent [Escherichia coli MS 110-3]
 gi|323949546|gb|EGB45434.1| DNA ligase [Escherichia coli H252]
 gi|323955668|gb|EGB51426.1| DNA ligase [Escherichia coli H263]
 gi|331054231|gb|EGI26258.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
          Length = 671

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/715 (34%), Positives = 408/715 (57%), Gaps = 56/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    +  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G 
Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LG+R VG   A  LA Y+ + +  A E  +I          L +VP VG 
Sbjct: 505 ETTFARFLYALGVREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++A  +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R
Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|78066803|ref|YP_369572.1| DNA ligase (NAD+) [Burkholderia sp. 383]
 gi|123742568|sp|Q39F38|DNLJ_BURS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77967548|gb|ABB08928.1| DNA ligase (NAD+) [Burkholderia sp. 383]
          Length = 691

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/709 (36%), Positives = 397/709 (55%), Gaps = 54/709 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L R    +    P+L     P+ P  ++GGE  
Sbjct: 20  LRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVT---PDSPTQRVGGEAA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  ED+  F  R+     K  D        + +  E K DG 
Sbjct: 77  GGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALDKTTDLAGSVTEPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE+G FV A+ RGDG +GEDV+  +R I +IP ++   ++P +++VRGEV + K 
Sbjct: 137 AISLRYEQGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKG 253
           DF  LN+   A  ++ +ANPRNAA+G LR+L+ + IT  R L+FF +G+G    +     
Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMPMLDT 255

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              +L     LG PVN          G++ ++ ++   R +LPYDIDG+VYKV+    Q+
Sbjct: 256 HSALLDWYESLGLPVNREREVVQGAEGLLGFFRKIGEKRESLPYDIDGVVYKVNRRDEQE 315

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATL
Sbjct: 316 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 375

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  P+ 
Sbjct: 376 HNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTE 424

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D 
Sbjct: 425 CPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQ 478

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RF
Sbjct: 479 LVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARF 528

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIRHVG   A+ LAK++ S       +  I+  + ++   L+ V  VG I+A+++ 
Sbjct: 529 IYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESLH 578

Query: 614 EFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +F+    N   +E L    K   P      K     +  K +V TGTL  + R  A+E +
Sbjct: 579 QFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAAKEML 638

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 639 EAAGAKVAGSVSKKTDYVVAGAEAGSKLVKAEELGIPVLDEDGLHQLLE 687


>gi|301063517|ref|ZP_07204049.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
 gi|300442456|gb|EFK06689.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
          Length = 671

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 260/716 (36%), Positives = 407/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E++R+E+  L+Q+I YH+  YY    P I D++YD L +R   +    P+L     P+ 
Sbjct: 1   MEKSRQEIDELKQKIEYHNHRYYVLDDPEIPDADYDRLFQRLLELETKHPEL---RSPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GGE      +V H  P LSLE  ++ + +  F  R+ +F    DD  + +T+EPK
Sbjct: 58  PTRKVGGETKSGFSRVIHRSPMLSLENCFDPQQILDFDKRVRKFL--GDDAPVQYTVEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEIIEVR 188
           IDG  + + Y++G+   A+ RGDG  GEDV+  I+ I  +P     R  SL IP+++EVR
Sbjct: 116 IDGLAVELVYKEGRLSVASTRGDGRVGEDVTRNIKTILNVPLKLVTRKQSLPIPDLLEVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246
           GEVY+    FL LN+   A     +ANPRNAA+G LR+L+ + IT  R L+ F +G+G  
Sbjct: 176 GEVYMDVAAFLKLNEHRAARNESLFANPRNAAAGSLRQLD-SRITARRRLDIFCYGVGNA 234

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             +  K   E++  ++  G  VN   +   +T   +VS    ++  R   PY+IDG V K
Sbjct: 235 EGLSFKTHLEVMMALQHWGLRVNRPHITICDTPDAVVSGCRHIEETRGLFPYEIDGAVIK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+   LQ +LG ++RSPRW +++KFA  Q  T +L I +Q+GRTG LTPVA+L PV +GG
Sbjct: 295 VNRLDLQFRLGMKSRSPRWAMAYKFAPTQEMTTVLGIHVQVGRTGALTPVAQLAPVELGG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            L++ ATLHN++ I             +DIR GD+V+V+RAG+VIP+VV  + ++R  + 
Sbjct: 355 VLVSRATLHNQEEID-----------RKDIREGDQVIVQRAGDVIPEVVKTVFSKRTGNE 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P  CP C + +++    K+G++VA  RC   + C AQ    ++HFVS+   +I+G
Sbjct: 404 KKFLMPEACPACGTAIIK----KSGEVVA--RCP-NVNCPAQVRGSIRHFVSKGGMDIDG 456

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV---SVTNLYDSI 542
           LG++ ++      D    ++  AD++ L R          ++LG  ++   S  NL  +I
Sbjct: 457 LGEKLVNKLL---DKGL-VKDEADLYELTR---------ADLLGLDNIKEKSAANLLGAI 503

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +  SL RFI++LGIRHVG   A  L++ +           NI + +N    +L  + 
Sbjct: 504 EKSKAPSLGRFIYALGIRHVGEFTAALLSERF----------GNIESLSNAGLEALSAID 553

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG  IA+++  ++ +P+N   +E L K     +    K   + +  K  V TGTL  ++
Sbjct: 554 GVGPQIAESVFNYFADPQNRALLERLFKAGVTPVSTRLKPADTPVAGKTFVLTGTLASVK 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+E +TQ G    + +SR TD ++ GD PGSKL+KA++L V I+NE++FL LL
Sbjct: 614 RSEAKEMITQKGGKAGSSVSRNTDYLVAGDEPGSKLQKARELDVAILNEKEFLDLL 669


>gi|239825842|ref|YP_002948466.1| NAD-dependent DNA ligase LigA [Geobacillus sp. WCH70]
 gi|239806135|gb|ACS23200.1| DNA ligase, NAD-dependent [Geobacillus sp. WCH70]
          Length = 670

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 258/720 (35%), Positives = 401/720 (55%), Gaps = 69/720 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A K +  L + ++ ++  YY   +P + D+EYD L +   A+   +PDL   + P+  
Sbjct: 4   QAAMKRIEELRELLNKYNYEYYVLDRPSVPDAEYDRLMQELIALEEQYPDLKTKDSPS-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+   +  KV H  P LSL   +N  DLR F  R+    +++  + + +  E KI
Sbjct: 62  -QRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRV----RQEVGDDVAYVCELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L LN P  +E RGE Y+ 
Sbjct: 117 DGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLP--LRLNEPVTLEARGEAYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN++    G + +ANPRNAA+G LR+L+P    +R+L+ FV+ L    E+    
Sbjct: 175 KASFERLNEQRRNRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYSLANAEELGIDS 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
               L  ++ LGF  N   R+      ++ + NE    RS LPY+IDG+V KVD F  QK
Sbjct: 235 HSAALDYLQQLGFKTNPERRRCANIDEVIQFVNEWHEKRSHLPYEIDGIVVKVDSFEQQK 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  A+SPRW +++KF  ++  T+L+ I++ +GRTG++TP A LEPV + G  +  ATL
Sbjct: 295 QLGATAKSPRWAVAYKFPAEEVVTKLIGIELSVGRTGVVTPTAILEPVRVAGTTVQRATL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED+I+            +DIR+GD V++K+AG++IP+VV+++ + R  +  PF  P+ 
Sbjct: 355 HNEDFIR-----------QKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVMPTH 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +VR      G++  A RC     C AQ  E L HFVSR A NIEGLG++ +  
Sbjct: 404 CPECASELVR----FDGEV--ALRCINP-KCPAQIREGLIHFVSRQAMNIEGLGEKVISQ 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+       I   AD++ L + Q     ++      G+ S TNL  +I   +  SLER 
Sbjct: 457 LFRE----GLIHDVADLYRLTKEQLIRLERM------GEKSATNLLRAIEASKQNSLERL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIRHVGA+ A+ LA+++ +                     L+ +  +G+ +A +IV
Sbjct: 507 LFGLGIRHVGAKAAKVLAEHFGTMDRLQTATKE----------ELMAIHEIGEKMADSIV 556

Query: 614 EFYQNPRNICAVEALLKEV-------------SPSIGRHEKNVSSEIENKKLVFTGTLQK 660
            ++  P     V+ LL E+             +P  G    +V S    K +V TG L+ 
Sbjct: 557 TYFAKPE----VKELLNELRAYGVNMEYKGPKTPKPG----DVHSYFAGKTVVLTGKLES 608

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R++A+E + QLG  V+  +S+ TD++I G + GSKL KAQQL ++I +EE+FL  ++Q
Sbjct: 609 LSRNEAKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLNIEIWDEERFLQEIEQ 668


>gi|323967844|gb|EGB63256.1| DNA ligase [Escherichia coli M863]
 gi|327252066|gb|EGE63738.1| DNA ligase, NAD-dependent [Escherichia coli STEC_7v]
          Length = 671

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|321314391|ref|YP_004206678.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5]
 gi|320020665|gb|ADV95651.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5]
          Length = 668

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 409/712 (57%), Gaps = 53/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A++    L + I+ +   YY   +P + D+EYD L +   AI    PDL     P+ P
Sbjct: 4   ETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTPDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +  +  KVTH  P LSL   +N +DLR F  R+    ++   + + + +E KI
Sbjct: 61  TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRV----RQSVGDDVAYNVELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I  IP  L +N    IEVRGE Y+ 
Sbjct: 117 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIP--LKMNRELSIEVRGEAYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F ALN+E I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+  + 
Sbjct: 175 KRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + L  +  LGF  N   ++  +   +++  +E+++ R+ LPY+IDG+V KVD    Q+
Sbjct: 235 QSQGLDFLDELGFKTNQERKKCGSIEEVITLIDELQAKRADLPYEIDGIVIKVDSLDQQE 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+L
Sbjct: 295 ELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED IK            +DIR+ D+V+VK+AG++IP+VV+++V +R  + + FS P+ 
Sbjct: 355 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSMPTE 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ +  
Sbjct: 404 CPECGSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+       +R  AD++ L + +     ++      G+ S  NL  SI K +  SLER 
Sbjct: 457 LFEEN----LVRNVADLYKLTKERVIQLERM------GEKSTENLISSIQKSKENSLERL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR +G++ A++LA ++ S +N  +               L+ V  +G+ +A A++
Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFESLENLKKASKE----------ELLAVDEIGEKMADAVI 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668
            ++     +  +  L +    ++ +  K V +E        K +V TG L+++ R++A+ 
Sbjct: 557 TYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKA 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  ++  +S+ TD++I G+  GSKL KAQ+L +++ NEEQ +  L++
Sbjct: 617 QIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668


>gi|293410811|ref|ZP_06654387.1| DNA ligase [Escherichia coli B354]
 gi|291471279|gb|EFF13763.1| DNA ligase [Escherichia coli B354]
          Length = 671

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|283832193|ref|ZP_06351934.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
 gi|291071830|gb|EFE09939.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
          Length = 671

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 405/712 (56%), Gaps = 50/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D EYD L  +   +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDLLMHKLQWLEALHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K  + + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTDKLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGAL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   +++YY++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PQHCPVCNSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+FTL      +  K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFTL------TAGKLTGLDRMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ +    A E  +I          L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLD--ALEAASI--------EELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F+    N   +  LL +     +P +   E+ + S    K +V TG+L  + R  A
Sbjct: 559 HVFNFFAEESNREVIGQLLAQGIHWPAPVVINAEE-IDSPFAGKTVVLTGSLSLMSRDDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +T+LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 618 KARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|187924439|ref|YP_001896081.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
 gi|254781278|sp|B2T5K0|DNLJ_BURPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187715633|gb|ACD16857.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
          Length = 688

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/706 (36%), Positives = 393/706 (55%), Gaps = 51/706 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+   +  YY   +P + D+EYD L +  ++I    PDL     P+ P  ++GGE  
Sbjct: 21  LRAELERANYAYYVLDQPDLPDAEYDKLFKELESIETEHPDLIV---PDSPTQRVGGEAA 77

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTLEPKIDGTMIT 140
                V H  P LSL   +  ED+  F  R+     K        + +  E K DG  I+
Sbjct: 78  SGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPPVPVDYAAELKFDGLAIS 137

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           +RY  G FV A+ RGDG +GE+V+  +R I +IP ++    +P +++VRGEV + K DF 
Sbjct: 138 LRYVDGAFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPHVLDVRGEVLMFKRDFE 197

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY-E 256
            LN+   A  +K +ANPRNAA+G LR+L+ + IT  R L+FF +G+G    +     + E
Sbjct: 198 RLNERQRAAEQKEFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLEGMEMPATHSE 256

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L   + LG PVN+         G++ +++ +   R  LPYDIDG+VYKV+    Q  LG
Sbjct: 257 LLDWYKELGLPVNSERAVVQGAEGLLGFFHGVGEKREKLPYDIDGVVYKVNRRDEQDALG 316

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLHNE
Sbjct: 317 FVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNE 376

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA+ F  P+ CP+
Sbjct: 377 DEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSALLDRRPSDAREFVMPTQCPV 425

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S + R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D   +
Sbjct: 426 CGSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVE 479

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +R PAD+F +          +  +  F + S  NL DS+ K ++ +L RFI++
Sbjct: 480 QN----LVRTPADLFNI------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYA 529

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG   A+ LAK++ S           +   ND          VG ++A++I +F+
Sbjct: 530 LGIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVND----------VGPVVAESIHQFF 579

Query: 617 QNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
               N   +E L    K   P      K     +  K +V TGTL  + R +A+E +   
Sbjct: 580 AEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPSLAREEAKEMLEAA 639

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           GA V+  +S+KTD ++ G + GSKL KA++LGV +++E+    LL+
Sbjct: 640 GAKVAGSVSKKTDYLVAGADAGSKLAKAEELGVPVLDEDGMRKLLE 685


>gi|15832537|ref|NP_311310.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. Sakai]
 gi|168768500|ref|ZP_02793507.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
 gi|168778374|ref|ZP_02803381.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
 gi|208813694|ref|ZP_03255023.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
 gi|208821178|ref|ZP_03261498.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
 gi|209399429|ref|YP_002271890.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115]
 gi|217326968|ref|ZP_03443051.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
 gi|254794365|ref|YP_003079202.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223146|ref|ZP_05937427.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259301|ref|ZP_05951834.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283640|ref|YP_003500458.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
 gi|166215595|sp|Q8XBL5|DNLJ_ECO57 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781320|sp|B5YZV8|DNLJ_ECO5E RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13362753|dbj|BAB36706.1| DNA ligase [Escherichia coli O157:H7 str. Sakai]
 gi|189003243|gb|EDU72229.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
 gi|189362250|gb|EDU80669.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
 gi|208734971|gb|EDZ83658.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
 gi|208741301|gb|EDZ88983.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
 gi|209160829|gb|ACI38262.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115]
 gi|209764248|gb|ACI80436.1| DNA ligase [Escherichia coli]
 gi|209764250|gb|ACI80437.1| DNA ligase [Escherichia coli]
 gi|209764252|gb|ACI80438.1| DNA ligase [Escherichia coli]
 gi|209764256|gb|ACI80440.1| DNA ligase [Escherichia coli]
 gi|217319335|gb|EEC27760.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
 gi|254593765|gb|ACT73126.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763513|gb|ADD57474.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
 gi|320188751|gb|EFW63410.1| DNA ligase [Escherichia coli O157:H7 str. EC1212]
 gi|320640925|gb|EFX10409.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. G5101]
 gi|320646206|gb|EFX15133.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str.
           493-89]
 gi|320651712|gb|EFX20092.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. H
           2687]
 gi|320657097|gb|EFX24906.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320662857|gb|EFX30185.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667743|gb|EFX34654.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326340214|gb|EGD64018.1| DNA ligase [Escherichia coli O157:H7 str. 1125]
 gi|326344216|gb|EGD67977.1| DNA ligase [Escherichia coli O157:H7 str. 1044]
          Length = 671

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP++CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTYCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|323170330|gb|EFZ55983.1| DNA ligase, NAD-dependent [Escherichia coli LT-68]
          Length = 671

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +S+ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNSLEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|331673883|ref|ZP_08374646.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
 gi|331069156|gb|EGI40548.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
          Length = 671

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPTPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|16130337|ref|NP_416906.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109225|ref|AP_003005.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           W3110]
 gi|170019306|ref|YP_001724260.1| NAD-dependent DNA ligase LigA [Escherichia coli ATCC 8739]
 gi|170082020|ref|YP_001731340.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188495579|ref|ZP_03002849.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
 gi|238901574|ref|YP_002927370.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|256021895|ref|ZP_05435760.1| NAD-dependent DNA ligase LigA [Escherichia sp. 4_1_40B]
 gi|300951893|ref|ZP_07165701.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
 gi|300957240|ref|ZP_07169472.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
 gi|301023745|ref|ZP_07187485.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
 gi|312973347|ref|ZP_07787519.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
 gi|2506362|sp|P15042|DNLJ_ECOLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781324|sp|B1XA82|DNLJ_ECODH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781325|sp|B1IX60|DNLJ_ECOLC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149242732|pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna
           Ligase Bound To Nicked Dna-Adenylate
 gi|146613|gb|AAA24070.1| DNA ligase (EC 6.5.1.2) [Escherichia coli]
 gi|1788750|gb|AAC75464.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675396|dbj|BAA16282.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr.
           W3110]
 gi|169754234|gb|ACA76933.1| DNA ligase, NAD-dependent [Escherichia coli ATCC 8739]
 gi|169889855|gb|ACB03562.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188490778|gb|EDU65881.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
 gi|238860822|gb|ACR62820.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|260448502|gb|ACX38924.1| DNA ligase, NAD-dependent [Escherichia coli DH1]
 gi|299880716|gb|EFI88927.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
 gi|300315993|gb|EFJ65777.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
 gi|300448878|gb|EFK12498.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
 gi|309702699|emb|CBJ02028.1| DNA ligase [Escherichia coli ETEC H10407]
 gi|310331942|gb|EFP99177.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
 gi|315137042|dbj|BAJ44201.1| NAD-dependent DNA ligase LigA [Escherichia coli DH1]
 gi|315615662|gb|EFU96294.1| DNA ligase, NAD-dependent [Escherichia coli 3431]
 gi|323936436|gb|EGB32725.1| DNA ligase [Escherichia coli E1520]
 gi|323941344|gb|EGB37529.1| DNA ligase [Escherichia coli E482]
          Length = 671

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 412/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|302390293|ref|YP_003826114.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646]
 gi|302200921|gb|ADL08491.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646]
          Length = 672

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/714 (35%), Positives = 395/714 (55%), Gaps = 52/714 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A   +  L + I+YH+  YY Y  P+I D+EYD L R+ + +   FP+L     P+ P 
Sbjct: 5   EAEARIKELRELINYHNRQYYVYDNPVISDAEYDKLMRQLEKLEKQFPELI---TPDSPS 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE      +V H +P +SL   ++  +L+ F  R+     +   + + + +EPKID
Sbjct: 62  QRVGGEPLPYFTQVVHRVPMMSLANAFDSGELKDFHRRV----TEAVGSEVQYVVEPKID 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-----EIIEVRGE 190
           G  ++I YE G F  AA RGDG  GEDV+  ++ I ++P  LSL+ P      ++EVRGE
Sbjct: 118 GLAVSITYENGIFKTAATRGDGEVGEDVTQNVKTIKSVP--LSLDFPPDKRPAVLEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
           VY+ K DF  LN+E    G   +ANPRNAA+G LR+L+P     R L  +++GLG    I
Sbjct: 176 VYLPKEDFRKLNEEREEQGLPLFANPRNAAAGSLRQLDPKVTAKRPLAVYIYGLGYAEGI 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +  YE+LQ  + +G  VN  V   + F  ++ Y       R  LPY+IDG+V KV+  
Sbjct: 236 EFETHYEVLQFFKRIGLRVNPHVVLFDRFQDVIDYCMSWNEKRHDLPYEIDGMVIKVNSL 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q  LG  A+SPRW I++KF  +Q  T + DI +++GRTG+LTP A LEPV + G+ ++
Sbjct: 296 KQQGILGATAKSPRWAIAYKFPAEQKKTVIKDIIVRVGRTGVLTPTAILEPVRVAGSTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNEDYI+            +DI++GD V++ +AG+VIP+VV+++  +R    + F 
Sbjct: 356 KATLHNEDYIR-----------EKDIKIGDTVIIHKAGDVIPEVVEVVKEKRTGKERDFE 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S  VR      G+  AA+RCT    C AQ    ++HF SRDA +I GLG  
Sbjct: 405 MPHRCPECGSEAVR----LPGE--AAYRCTNSTGCPAQIRRSIEHFASRDAMDIRGLGSA 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +            I+  AD++ L+R       ++      G+ S  NL  +I + +   
Sbjct: 459 IVSLLISQG----LIKDAADLYYLKREDLVPLERM------GEKSAANLLAAIEESKKRP 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L+R I++LGI  VG+  A  LA+ + S       I+++     +D   LI+VP +GD IA
Sbjct: 509 LDRLIYALGIPFVGSRTASLLAEAFSS-------IDDLQKAKYED---LIKVPEIGDKIA 558

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q+I+ F++  +    +  L         + +      ++    V TGTL+K  R +A E 
Sbjct: 559 QSILAFFRQEQTNDLISRLRAAGVNMEAQKKAEGPRPLDGLTFVLTGTLEKYTRQQATEL 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + +LG  V+  +S+KTD ++VG +PGSK E A +LG+KI+NE +F  L++++  
Sbjct: 619 IEKLGGRVTGSVSKKTDYVVVGKDPGSKYENALKLGIKILNEGEFEELIEKWKA 672


>gi|221198328|ref|ZP_03571374.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
 gi|221208267|ref|ZP_03581271.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
 gi|221171915|gb|EEE04358.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
 gi|221182260|gb|EEE14661.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
          Length = 691

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 260/708 (36%), Positives = 392/708 (55%), Gaps = 52/708 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L R    +    PDL     P+ P  ++GG + 
Sbjct: 20  LRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVT---PDSPTQRVGGAVA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  +D+  F  R+     K  D      + + +  E K DG 
Sbjct: 77  SGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196
            I++RYE G FV A+ RGDG +GEDV+  +R I +IP  L  + +P +++VRGEV + K 
Sbjct: 137 AISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGDRVPAVLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254
           DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G    +      
Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPIPDTH 256

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L     LG PVN          G++ ++ ++   R +LPYDIDG+VYKV+    Q +
Sbjct: 257 SALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQDR 316

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ ++HKF  ++A T+L+ I +Q+GRTG +TPVARLEPV +GGA +TNATLH
Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATVTNATLH 376

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  P+ C
Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTEC 425

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D  
Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RFI
Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIRHVG   A+ LAK++ S       ++ I+    D+   L+ V  VG I+A++I +
Sbjct: 530 YALGIRHVGESTAKDLAKHFGS-------LDPIMNATIDE---LLEVNDVGPIVAESIHQ 579

Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           F+    N   +E L    K   P      K     +  K +V TGTL  + R  A+E + 
Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDDAKEMLE 639

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GA V+  +S+KTD +I G   GSKL KA+ LG+ +++E+    LL+
Sbjct: 640 AAGAKVAGSVSKKTDYVIAGIEAGSKLAKAEALGIPVLDEDGLHQLLE 687


>gi|218548148|ref|YP_002381939.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ATCC 35469]
 gi|331684067|ref|ZP_08384663.1| DNA ligase, NAD-dependent [Escherichia coli H299]
 gi|254781331|sp|B7LL73|DNLJ_ESCF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218355689|emb|CAQ88301.1| DNA ligase, NAD(+)-dependent [Escherichia fergusonii ATCC 35469]
 gi|315298233|gb|EFU57493.1| DNA ligase, NAD-dependent [Escherichia coli MS 16-3]
 gi|331079019|gb|EGI50221.1| DNA ligase, NAD-dependent [Escherichia coli H299]
          Length = 671

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|115352108|ref|YP_773947.1| DNA ligase [Burkholderia ambifaria AMMD]
 gi|122322835|sp|Q0BE10|DNLJ_BURCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115282096|gb|ABI87613.1| DNA ligase, NAD-dependent [Burkholderia ambifaria AMMD]
          Length = 691

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/711 (36%), Positives = 395/711 (55%), Gaps = 58/711 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L      +    PDL     P+ P  ++GGE+ 
Sbjct: 20  LRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLVT---PDSPTQRVGGEVA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  ED+  F  R+     K  D      + + +  E K DG 
Sbjct: 77  GGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE G FV A+ RGDG +GEDV+  +R I +IP ++   ++P +++VRGEV + K 
Sbjct: 137 AISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254
           DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G    +      
Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L      G PVN          G++ ++ ++   R +LPYDIDG+VYKV+    Q +
Sbjct: 257 SALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVNRRDEQDR 316

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH
Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 376

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  P+ C
Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFVMPTEC 425

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D  
Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RFI
Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIRHVG   A+ LAK++ S       +  I+  + ++   L+ V  VG I+A++I +
Sbjct: 530 YGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESIHQ 579

Query: 615 FYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           F+    N   +E L           P   R  + V   +  K +V TGTL  + R  A+E
Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWAEGPPAPRAPQGV---LAGKTVVLTGTLPNLTRDAAKE 636

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E+    LL+
Sbjct: 637 MLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|332798609|ref|YP_004460108.1| DNA ligase [Tepidanaerobacter sp. Re1]
 gi|332696344|gb|AEE90801.1| DNA ligase [Tepidanaerobacter sp. Re1]
          Length = 675

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 262/709 (36%), Positives = 403/709 (56%), Gaps = 53/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I QA   +  L + I YH+  YY    P I D+EYD L R   ++   FP L     P
Sbjct: 1   MDIVQAENRIKELRESIDYHNYRYYVLDNPEITDAEYDKLMRELISLESQFPQLI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE   +  KVTH  P +SL   ++ E+LR F  R+     +   N + + +E
Sbjct: 58  DSPSQRVGGEPLEAFKKVTHREPMISLADAFSEEELRDFNRRV----TENVGNQVEYVVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVR 188
            KIDG  +++ YE G  V AA RGDG  GEDV+  ++ I ++P  L++    IP +IEVR
Sbjct: 114 LKIDGLAVSLTYENGLLVTAATRGDGVVGEDVTQNVKTIKSVPLRLNIQKDKIPMVIEVR 173

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246
           GE+Y+SK  F  LN+E   +G   +ANPRNAA+G +R+L+ + IT  R L+ F++ LG  
Sbjct: 174 GEIYLSKEGFKKLNEEREEMGLPTFANPRNAAAGSIRQLD-SKITAKRPLSTFMYALGYV 232

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             I      E+L+  +  GF VN  ++  N F  ++ Y    K  R +LPY+IDG+V KV
Sbjct: 233 EGIEFNTHLEVLEFYKACGFKVNPHIKSFNNFDDVIDYCMSWKEKRHSLPYEIDGMVIKV 292

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +    QK LG  A++PRW I++KF  +Q  + + DI + +GRTG+LTP A L PV I G+
Sbjct: 293 NSLHFQKILGSTAKTPRWAIAYKFPAEQKISVIEDIVVSVGRTGVLTPNAVLTPVQIAGS 352

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATLHNEDYIK            +DI +GD V+V++AG++IP+VV +I  +R  + +
Sbjct: 353 TVSRATLHNEDYIK-----------EKDIHIGDSVIVQKAGDIIPEVVAVIKEKRTGNEK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P  CP C S V+R      G++  A+RCT G++C AQ   R+ HF SRDA +I GL
Sbjct: 402 EFKMPHRCPECGSEVIR----LPGEV--AYRCT-GVSCPAQIRRRIIHFASRDAMDIRGL 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G   +     SE+    I+  +DI+ L++       ++      G+ S  NL  +I   +
Sbjct: 455 GPAIVSLLL-SEN---LIKDVSDIYFLKKEALIPLERM------GEKSANNLIKAIENSK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L R +++LGI  +G++ + +L          AQE  ++    N  +  LI++P +GD
Sbjct: 505 KQPLNRLVYALGIPLIGSKASLTL----------AQEFKSMDRLQNATYEELIKIPEIGD 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHK 665
            +A++I+ F++  +   A+   LKE   ++   ++ +  + +EN   V TG L+K  R K
Sbjct: 555 KMAESIIAFFKQEQT-KALITRLKEAGVNMLYAKEEIGPKPLENLTFVLTGALEKYSRSK 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           AQE +  LG  V+  +S+KTD ++VG +PGSK  KA +LGVKI++E+QF
Sbjct: 614 AQELIENLGGKVTGSVSKKTDYVVVGKDPGSKYNKALELGVKILDEQQF 662


>gi|301022290|ref|ZP_07186186.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
 gi|300397609|gb|EFJ81147.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
          Length = 671

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/716 (35%), Positives = 409/716 (57%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYEMLQKMRCL-----GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+       R L     G PV++ V    +   ++++Y++++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G 
Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG 
Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ 
Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 614 RDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|331653837|ref|ZP_08354838.1| DNA ligase, NAD-dependent [Escherichia coli M718]
 gi|331048686|gb|EGI20762.1| DNA ligase, NAD-dependent [Escherichia coli M718]
          Length = 671

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKSKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVYNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669


>gi|56479083|ref|YP_160672.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
 gi|81356392|sp|Q5NYU3|DNLJ_AZOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56315126|emb|CAI09771.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
          Length = 681

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 263/713 (36%), Positives = 383/713 (53%), Gaps = 59/713 (8%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L +E+  HD  YY    P + D+EYD L R  DA+    P+L     P+ P  ++GG 
Sbjct: 12  AQLRRELEAHDHAYYVLDAPTVPDAEYDRLFRELDALERRHPELLV---PDSPTRRVGGA 68

Query: 82  MNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQ-KKDDNSIFFTLEPKIDGTM 138
               L  V H++P LS+  E       +  F TR+    +       + +  E K DG  
Sbjct: 69  PVPGLVPVRHAVPMLSIRTETDTTSGGVIAFDTRVRNALELGPHAPPVEYLGELKFDGLA 128

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++RYE G  V AA RGDG++GEDV+  +R I  IP  L    P +IEVRGE+Y+ ++ F
Sbjct: 129 ISLRYENGMLVRAATRGDGYTGEDVTHSVRTIRQIPLRLPGRPPALIEVRGEIYMRRDAF 188

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI----FAKG 253
             LN      G K + NPRNAA+G +R+L+      R L+FF +G G+  E         
Sbjct: 189 ERLNARQSETGGKVFVNPRNAAAGAVRQLDARIAARRPLSFFAYGFGEIGESGGWNMPAT 248

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q EML  +  LG PV      A+   G++++++ + + R +LPYDIDG+VYKV+ F LQ+
Sbjct: 249 QGEMLDALDALGIPVCEHRVVASGPDGLIAFHDRIAAARDSLPYDIDGVVYKVNRFDLQR 308

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG   R PRW ++HK+  ++  T L+DI+IQ+GRTG LTPVARL+PV +GG  +TNATL
Sbjct: 309 RLGFVTREPRWAVAHKYPAQEEITELVDIEIQVGRTGALTPVARLKPVFVGGVTVTNATL 368

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNE+ I+         R G  + +GD+V+V+RAG+VIP++V  +V  R+   +PF  P  
Sbjct: 369 HNEEEIQ---------RKG--LLIGDQVIVRRAGDVIPQIVAPVVERRNGSERPFVMPQT 417

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S   +  +       A  RC+GGL C AQ+ + L HF  R A +IEGLG + +D 
Sbjct: 418 CPVCGSHAEKQPDE------AVTRCSGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQ 471

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     +  PAD++ L         K+ N+    D S  NL  +I K R+ +L RF
Sbjct: 472 LVDGG----IVSTPADLYRL------GLVKLANLPRMADKSAANLLAAIEKSRHATLARF 521

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR+VG   AR LA+++           ++ A  + D   L +V  VG I+A +I 
Sbjct: 522 IFALGIRNVGEATARELARHF----------GSLDALMDADIERLQQVADVGPIVAHSIA 571

Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            F+    N   +E L        E  P++             K  V TG L  + R  A+
Sbjct: 572 GFFAEMHNREVIEQLRAAGVHWDEGVPAVA-----ADGPASGKTFVLTGALPTMSRDDAK 626

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +   G  VS  +S+KTD ++ G   GSKL KAQ+LGV I++E+    LL+Q
Sbjct: 627 ALIESHGGKVSGSVSKKTDYVVAGAEAGSKLAKAQELGVAILDEDGLRRLLEQ 679


>gi|293415682|ref|ZP_06658325.1| DNA ligase [Escherichia coli B185]
 gi|291433330|gb|EFF06309.1| DNA ligase [Escherichia coli B185]
          Length = 671

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|238912842|ref|ZP_04656679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 671

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/716 (35%), Positives = 407/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQY-----EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+      E L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLERLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGINVIDEAEMIRLL 669


>gi|94499335|ref|ZP_01305873.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65]
 gi|94428967|gb|EAT13939.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65]
          Length = 694

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 264/711 (37%), Positives = 394/711 (55%), Gaps = 58/711 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L  E++  +  YY    P I D+EYD L      +    P+L   + P   +    G
Sbjct: 26  VAELRDELNRANHAYYVLDDPSIPDAEYDRLFHELKGLESKHPELLTKDSPTQRV----G 81

Query: 81  EMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
              LS F+ V H +P LSL+  ++ +D+R F  RI      K  +SI F  EPK+DG  +
Sbjct: 82  ATPLSEFETVAHEVPMLSLDNAFDDQDMRDFNRRISERLTTK--SSIRFACEPKLDGIAV 139

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDF 198
           ++ YE GK V AA RGDG  GE+++  IR + ++P  L  N  P ++EVRGEVY+ K  F
Sbjct: 140 SLLYENGKLVRAATRGDGAVGENITQNIRTVYSVPLTLMGNDHPPVLEVRGEVYMPKKGF 199

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAKGQYE 256
            A N +    G K + NPRNAA+G LR+L+     +R L F  + +G+           E
Sbjct: 200 EAFNVKARERGEKTFVNPRNAAAGSLRQLDSRITASRPLEFCCYSMGRVDGAELPTVHSE 259

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+K    GF +N  +       G + YY  + + R+ LPY+IDG+VYKVD+  LQ++LG
Sbjct: 260 ILKKFSEWGFKINPEMAVVEGVEGCLDYYENLAAKRNDLPYEIDGIVYKVDDLKLQQRLG 319

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+ KF  ++  T L  I+ Q+GRTG +TPVARLEPV +GG  ++NATLHN 
Sbjct: 320 FVSRAPRWAIARKFPAQEEMTLLKGIEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNM 379

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++ LDA           R+GD V+++RAG+VIP+V  ++  +R  ++Q    P  CP+
Sbjct: 380 DEVERLDA-----------RIGDTVVIRRAGDVIPQVASVVKEKRPDNSQKIQLPDACPV 428

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R      G+ VA  RCTGGL C+AQ+ E +KHF SR A +I+GLG + ++    
Sbjct: 429 CDSHVER----VEGEAVA--RCTGGLVCAAQRKEAIKHFASRKAMDIDGLGDKIVEQLVD 482

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   D++ L+     S  ++      GD S  NL  +I   +N S  +F+++
Sbjct: 483 EG----KIKSFVDLYKLKHEDIASLERM------GDKSAQNLLKAIEASKNTSFPKFLYA 532

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +L +++L+       I  ++  + D+   LI V  VG I+A+ I+ F+
Sbjct: 533 LGIREVGVATANNLVQHFLT-------IRALVKASFDE---LIEVDDVGPIVAEHILNFF 582

Query: 617 QNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
             P N   ++ LL       EV  S+   E  +S E      V TGTL  + R  A+ Y+
Sbjct: 583 AEPHNQTIIDGLLNIGITWPEVK-SVSNSELPLSGET----YVVTGTLSAMGRENAKAYL 637

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            QLGA V+  +S+KT  ++ G+  GSKL KAQ L V +++EEQFL LL ++
Sbjct: 638 QQLGAKVAGSVSKKTSALVAGEKAGSKLTKAQDLEVPVLDEEQFLSLLAEH 688


>gi|161612830|ref|YP_001586795.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|190359282|sp|A9N362|DNLJ_SALPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161362194|gb|ABX65962.1| hypothetical protein SPAB_00529 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 671

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/716 (35%), Positives = 407/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL CSAQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICSAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|208779663|ref|ZP_03247008.1| DNA ligase, NAD-dependent [Francisella novicida FTG]
 gi|208744624|gb|EDZ90923.1| DNA ligase, NAD-dependent [Francisella novicida FTG]
          Length = 678

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 269/728 (36%), Positives = 410/728 (56%), Gaps = 65/728 (8%)

Query: 6   LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + P E  SI+    A+ EL +    L   +S     Y+   KPII DS+YD L R    +
Sbjct: 1   MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +  P     +  N  L+++GGE+      + H     SL  ++++E+LR F  +I    
Sbjct: 61  VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
               +  I    EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L+
Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169

Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
             N PE +EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L
Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229

Query: 237 NFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
             + +G+G  S+ F   + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ 
Sbjct: 230 KLYSYGIGYFSKDFVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDGLV+KV+   LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TP
Sbjct: 290 LAYDIDGLVFKVNNIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG +++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV
Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVV 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R  DAQ    P+ CP+C S  + ++N +     A +RCTGG  C AQ  ERLKH
Sbjct: 399 KSLPQYRKSDAQMVEMPTNCPVCDS-AIENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I+ LG + ++        A  I+ PADI+ L   Q T   ++      G  S
Sbjct: 453 FVSRKATDIDKLGAKLIEQLV----AANLIKYPADIYKLNFDQLTGLERM------GAKS 502

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N+ DSI K +  SL RFIF++GI+ +G   + +LA ++ S ++F           +  
Sbjct: 503 SQNVLDSIKKSKTPSLARFIFAIGIKDIGEVSSDALANHFGSLESF----------RDAK 552

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650
           +  LI +  +G+I+A  IV F+ +  NI  VE LL    K  +P    H  N S     K
Sbjct: 553 FEELIEINDIGEIMANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNES--FTGK 610

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+ +   R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ 
Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670

Query: 711 EEQFLFLL 718
           E+    LL
Sbjct: 671 EDNLKDLL 678


>gi|110642595|ref|YP_670325.1| NAD-dependent DNA ligase LigA [Escherichia coli 536]
 gi|191174600|ref|ZP_03036093.1| DNA ligase, NAD-dependent [Escherichia coli F11]
 gi|300997757|ref|ZP_07181842.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
 gi|306814500|ref|ZP_07448662.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
 gi|122958158|sp|Q0TF55|DNLJ_ECOL5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110344187|gb|ABG70424.1| DNA ligase [Escherichia coli 536]
 gi|190905126|gb|EDV64772.1| DNA ligase, NAD-dependent [Escherichia coli F11]
 gi|222034142|emb|CAP76883.1| DNA ligase [Escherichia coli LF82]
 gi|300304141|gb|EFJ58661.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
 gi|305851894|gb|EFM52346.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
 gi|312947007|gb|ADR27834.1| NAD-dependent DNA ligase LigA [Escherichia coli O83:H1 str. NRG
           857C]
 gi|324011127|gb|EGB80346.1| DNA ligase, NAD-dependent [Escherichia coli MS 60-1]
          Length = 671

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 409/712 (57%), Gaps = 50/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 618 KARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLHLL 669


>gi|157161876|ref|YP_001459194.1| NAD-dependent DNA ligase LigA [Escherichia coli HS]
 gi|253772690|ref|YP_003035521.1| NAD-dependent DNA ligase LigA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162394|ref|YP_003045502.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
 gi|297517308|ref|ZP_06935694.1| NAD-dependent DNA ligase LigA [Escherichia coli OP50]
 gi|300928569|ref|ZP_07144093.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
 gi|190359254|sp|A8A2Q7|DNLJ_ECOHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157067556|gb|ABV06811.1| DNA ligase, NAD-dependent [Escherichia coli HS]
 gi|242378018|emb|CAQ32789.1| DNA ligase [Escherichia coli BL21(DE3)]
 gi|253323734|gb|ACT28336.1| DNA ligase, NAD-dependent [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974295|gb|ACT39966.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
 gi|253978462|gb|ACT44132.1| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)]
 gi|300463441|gb|EFK26934.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
 gi|323961212|gb|EGB56824.1| DNA ligase [Escherichia coli H489]
 gi|323970900|gb|EGB66151.1| DNA ligase [Escherichia coli TA007]
 gi|332344237|gb|AEE57571.1| DNA ligase, NAD-dependent LigA [Escherichia coli UMNK88]
          Length = 671

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|323702801|ref|ZP_08114460.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
 gi|323532189|gb|EGB22069.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
          Length = 669

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 260/709 (36%), Positives = 400/709 (56%), Gaps = 54/709 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L +EI+YH+  YY    P I D +YD L +    + +A+P+L     P+ P  +
Sbjct: 9   KARVEELRREINYHNHQYYVLDNPTITDGQYDQLVQELLRLENAYPELV---SPDSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+      V H +P LSL   ++  DLR+F  R+      ++   + + LE KIDG 
Sbjct: 66  VGGEIQKGFTAVQHRVPMLSLSNAFSENDLREFDRRVRSNLPGEE---VEYVLELKIDGL 122

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE+G FV  A RGDG  GED++A +R I  IP  +  +IP  +EVRGE Y+ K  
Sbjct: 123 AISLWYEQGVFVRGATRGDGELGEDITANLRTIKAIPLRIKESIP-FLEVRGEAYMPKES 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F+ LN+     G   +ANPRNAA+G LR+L+P    +R L+ F++ +G            
Sbjct: 182 FVRLNEAREEAGEPLFANPRNAAAGSLRQLDPRVTASRNLSVFMYAIGHLEGANPGTHAR 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L  ++ LGF VN   +       ++   ++ +  R  LPY IDGLV KV+    Q++LG
Sbjct: 242 LLGWLKDLGFRVNQHYKLCKDIEEVIRQIDKWQEQRFELPYAIDGLVIKVNSLDQQQRLG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  +QA + + DI I++GRTG+LTP A LEPV + G  ++ ATLHNE
Sbjct: 302 ATLKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTTVSKATLHNE 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD+ LV++AG++IP+VV +    R    +PF+ PS CP 
Sbjct: 362 DIIR-----------QKDIRIGDQALVQKAGDIIPEVVLVFPERRTGQEKPFTMPSTCPE 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + VVR      G+  AAHRCT    C A   E + HFVSR A +I GLG+  ++    
Sbjct: 411 CNAPVVR----LPGE--AAHRCTNK-NCPAISREGIIHFVSRGAMDIMGLGESIVNQLIM 463

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  ++ PAD++ L+        K+E +   G  S  NL ++I   ++ SL + + +
Sbjct: 464 ----AGLVQDPADLYDLKYE---DLIKLERM---GARSSQNLLNAIAASKHNSLAQLLVA 513

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG   A+ LA+++ S       ++ ++A   +D   L  +P +G  IA++IV+++
Sbjct: 514 LGIRHVGERAAKILARHFGS-------MSALMAATVED---LTVIPEIGPKIAESIVDYF 563

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQEYVT 671
             P N   ++ L +     +   E N  +E     +  K  V TGTL+   R +AQ  + 
Sbjct: 564 ARPENKTLIQRLDRA---GVNMEEANQQAEPGQQPLAGKTFVITGTLEGFSRQEAQRAIE 620

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +LG  VS  +S+KTD ++VG+NPGSK +KAQQLG+ I+NE++F+ LL+Q
Sbjct: 621 ELGGKVSGSVSKKTDYVVVGENPGSKYDKAQQLGIPILNEQEFVALLKQ 669


>gi|325496534|gb|EGC94393.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ECD227]
          Length = 671

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|218700877|ref|YP_002408506.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI39]
 gi|254781321|sp|B7NPU7|DNLJ_ECO7I RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218370863|emb|CAR18680.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39]
          Length = 671

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V K++  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKINSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|300923365|ref|ZP_07139409.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
 gi|300420362|gb|EFK03673.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
          Length = 671

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKGFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|325529285|gb|EGD06234.1| NAD-dependent DNA ligase [Burkholderia sp. TJI49]
          Length = 691

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/710 (36%), Positives = 396/710 (55%), Gaps = 52/710 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L      +    P+      P+ P  ++GGE+ 
Sbjct: 20  LRDQLQQANYAYYVLDQPDLPDAEYDRLFAELQQLEADHPEFVT---PDSPTQRVGGEVA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  +D+  F  R+     K  D      + + +  E K DG 
Sbjct: 77  SGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKAVDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE+G FV A+ RGDG +GEDV+  +R I +IP ++   ++P +++VRGEV + K 
Sbjct: 137 AISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGADVPAVLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G    +     +
Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256

Query: 256 E-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L     LG PVN      +   G++ ++ ++   R  LPYDIDG+VYKV+    Q +
Sbjct: 257 SGLLDWYETLGLPVNRERAVVHGADGLLGFFRKVGEKRDGLPYDIDGVVYKVNRRDEQDR 316

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH
Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 376

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  P+ C
Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTEC 425

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D  
Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +  RFI
Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTRARFI 529

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIRHVG   A+ LAK++ S       ++ I+  + D+   L+ V  VG I+A++I +
Sbjct: 530 YGLGIRHVGESTAKDLAKHFGS-------LDPIMNASIDE---LLEVNDVGPIVAESIHQ 579

Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           F+    N   +E L    K   P      K     +  K +V TGTL  + R  A+E + 
Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLE 639

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             GA V+  +S+KTD ++ G   GSKL KA++LG+ +++EE    LL+ +
Sbjct: 640 AAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEEGLHQLLEGH 689


>gi|118497929|ref|YP_898979.1| DNA ligase [Francisella tularensis subsp. novicida U112]
 gi|194323151|ref|ZP_03056935.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida
           FTE]
 gi|166215758|sp|A0Q7L0|DNLJ_FRATN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118423835|gb|ABK90225.1| DNA ligase [Francisella novicida U112]
 gi|194322515|gb|EDX19995.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida
           FTE]
          Length = 678

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 269/728 (36%), Positives = 409/728 (56%), Gaps = 65/728 (8%)

Query: 6   LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + P E  SI+    A+ EL +    L   +S     Y+   KPII DS+YD L R    +
Sbjct: 1   MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +  P     +  N  L+++GGE+      + H     SL  ++++E+LR F  +I    
Sbjct: 61  VNDNPQF---KPINSVLDRVGGEVLAEFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
               +  I    EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L+
Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169

Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
             N PE +EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L
Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229

Query: 237 NFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
             + +G+G  S+ F   + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ 
Sbjct: 230 KLYSYGIGYFSKDFVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDGLV+KV+   LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TP
Sbjct: 290 LAYDIDGLVFKVNNIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG +++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV
Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVV 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R  DAQ    P+ CP+C S  + ++N +     A +RCTGG  C AQ  ERLKH
Sbjct: 399 KSLPQYRKSDAQMVEMPTNCPVCDS-AIENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I+ LG + ++        A  I+ PADI+ L   Q T   ++      G  S
Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFDQLTGLERM------GAKS 502

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N+ DSI K +  SL RFIF++GI+ +G   +  LA ++ S ++F           +  
Sbjct: 503 SQNVLDSIKKSKTPSLARFIFAIGIKDIGEVSSDVLANHFGSLESF----------RDAK 552

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650
           +  LI +  +G+I+A  IV F+ +  NI  VE LL    K  +P    H  N S     K
Sbjct: 553 FEELIEINDIGEIMANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNES--FTGK 610

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+ +   R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ 
Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670

Query: 711 EEQFLFLL 718
           E+    LL
Sbjct: 671 EDNLKDLL 678


>gi|157156100|ref|YP_001463741.1| NAD-dependent DNA ligase LigA [Escherichia coli E24377A]
 gi|193066723|ref|ZP_03047750.1| DNA ligase, NAD-dependent [Escherichia coli E22]
 gi|194430461|ref|ZP_03062941.1| DNA ligase, NAD-dependent [Escherichia coli B171]
 gi|209919893|ref|YP_002293977.1| NAD-dependent DNA ligase LigA [Escherichia coli SE11]
 gi|218554944|ref|YP_002387857.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI1]
 gi|218696047|ref|YP_002403714.1| NAD-dependent DNA ligase LigA [Escherichia coli 55989]
 gi|256017438|ref|ZP_05431303.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
 gi|260845052|ref|YP_003222830.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
 gi|260856513|ref|YP_003230404.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|260869108|ref|YP_003235510.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
 gi|293446772|ref|ZP_06663194.1| DNA ligase [Escherichia coli B088]
 gi|300817349|ref|ZP_07097566.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
 gi|300820921|ref|ZP_07101071.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
 gi|300903139|ref|ZP_07121073.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
 gi|300921341|ref|ZP_07137704.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
 gi|301306250|ref|ZP_07212323.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
 gi|301328910|ref|ZP_07221944.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
 gi|307312589|ref|ZP_07592222.1| DNA ligase, NAD-dependent [Escherichia coli W]
 gi|309794543|ref|ZP_07688966.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
 gi|331669152|ref|ZP_08370000.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
 gi|331678399|ref|ZP_08379074.1| DNA ligase, NAD-dependent [Escherichia coli H591]
 gi|332278439|ref|ZP_08390852.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
 gi|190359253|sp|A7ZPL2|DNLJ_ECO24 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781319|sp|B7LCF6|DNLJ_ECO55 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781323|sp|B7M6S1|DNLJ_ECO8A RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781327|sp|B6I4Y8|DNLJ_ECOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157078130|gb|ABV17838.1| DNA ligase, NAD-dependent [Escherichia coli E24377A]
 gi|192925627|gb|EDV80294.1| DNA ligase, NAD-dependent [Escherichia coli E22]
 gi|194411494|gb|EDX27836.1| DNA ligase, NAD-dependent [Escherichia coli B171]
 gi|209913152|dbj|BAG78226.1| DNA ligase [Escherichia coli SE11]
 gi|218352779|emb|CAU98567.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989]
 gi|218361712|emb|CAQ99309.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1]
 gi|257755162|dbj|BAI26664.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|257760199|dbj|BAI31696.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
 gi|257765464|dbj|BAI36959.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
 gi|291323602|gb|EFE63030.1| DNA ligase [Escherichia coli B088]
 gi|300404835|gb|EFJ88373.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
 gi|300411729|gb|EFJ95039.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
 gi|300526674|gb|EFK47743.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
 gi|300529975|gb|EFK51037.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
 gi|300838493|gb|EFK66253.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
 gi|300844712|gb|EFK72472.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
 gi|306907512|gb|EFN38016.1| DNA ligase, NAD-dependent [Escherichia coli W]
 gi|308121999|gb|EFO59261.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
 gi|315061736|gb|ADT76063.1| DNA ligase, NAD(+)-dependent [Escherichia coli W]
 gi|315256427|gb|EFU36395.1| DNA ligase, NAD-dependent [Escherichia coli MS 85-1]
 gi|320199974|gb|EFW74563.1| DNA ligase [Escherichia coli EC4100B]
 gi|323156318|gb|EFZ42476.1| DNA ligase, NAD-dependent [Escherichia coli EPECa14]
 gi|323159458|gb|EFZ45441.1| DNA ligase, NAD-dependent [Escherichia coli E128010]
 gi|323177463|gb|EFZ63051.1| DNA ligase, NAD-dependent [Escherichia coli 1180]
 gi|323184284|gb|EFZ69660.1| DNA ligase, NAD-dependent [Escherichia coli 1357]
 gi|323377683|gb|ADX49951.1| DNA ligase, NAD-dependent [Escherichia coli KO11]
 gi|323944634|gb|EGB40701.1| DNA ligase [Escherichia coli H120]
 gi|324020175|gb|EGB89394.1| DNA ligase, NAD-dependent [Escherichia coli MS 117-3]
 gi|324118125|gb|EGC12023.1| DNA ligase [Escherichia coli E1167]
 gi|331064346|gb|EGI36257.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
 gi|331074859|gb|EGI46179.1| DNA ligase, NAD-dependent [Escherichia coli H591]
 gi|332100791|gb|EGJ04137.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
          Length = 671

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|323188282|gb|EFZ73575.1| DNA ligase, NAD-dependent [Escherichia coli RN587/1]
          Length = 671

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/715 (35%), Positives = 407/715 (56%), Gaps = 56/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L  L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    +  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G 
Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG 
Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++A  +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R
Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|300724062|ref|YP_003713378.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
 gi|297630595|emb|CBJ91260.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
          Length = 658

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/704 (35%), Positives = 394/704 (55%), Gaps = 57/704 (8%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + +H+  Y+    P I D+EYD L R   A+    P+   ++ P     +IG     +  
Sbjct: 1   MRHHEYLYHVMDAPEIPDAEYDRLMRELKALEEQHPEWVTADSPT---QRIGATPLSAFE 57

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           +V H IP LSL+ +++ E    F  R+    + KD     F  E K+DG  +++ YE G+
Sbjct: 58  QVRHEIPMLSLDNVFDEESYLAFDKRVRD--RLKDSQDWVFCCELKLDGLAVSLLYENGE 115

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
            V AA RGDG +GE+++A +R I  IP R+   NIP  +E+RGEV+I +  F  LN+E  
Sbjct: 116 LVQAATRGDGTTGENITANVRTIHAIPLRLKGENIPARVEIRGEVFIKQTGFEKLNEEAR 175

Query: 207 AVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG-KTSEIFAKGQYEMLQKMRCL 264
             G K +ANPRNAA+G LR+L+P     R L F+ +G+G +         Y  L + +  
Sbjct: 176 RTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGIGVQEGGALPASHYARLMQFKEW 235

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G PV++ V+       ++ +Y +++  R TL +DIDG+V KVD   LQ++LG  A++PRW
Sbjct: 236 GLPVSDKVKLCLGTQQVIDFYQDIEQQRPTLGFDIDGVVVKVDSLELQERLGFVAKAPRW 295

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             + KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G  ++NATLHN D I+ L  
Sbjct: 296 ATAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVSVAGVTVSNATLHNADEIERL-- 353

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                     +R+GD V+++RAG+VIP+VV +I   R  ++    FP  CP+C S    D
Sbjct: 354 ---------GLRIGDTVIIRRAGDVIPQVVGVIHERRPAESLEVIFPQHCPVCGS----D 400

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
           +    G+ VA  RCTGGL C AQ+ E L+HFVSR A +++G+G++ ++     E     +
Sbjct: 401 IERVEGEAVA--RCTGGLFCGAQRKEALRHFVSRRAMDVDGMGEKIIEQLVDKE----YV 454

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           + PAD+F L      +  K+  +   G  S  N+ +++ K R  +  RFI+SLGIR VG 
Sbjct: 455 KTPADLFRL------TAGKLTGLERMGPKSAQNVINALEKARKTTFARFIYSLGIREVGE 508

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A +L  ++ + +               D  +LI V  VG I+A  +V F+  P N   
Sbjct: 509 TTAANLVSHFGTLEKL----------QAADTEALIAVQDVGGIVASHVVNFFNEPHNQAV 558

Query: 625 VEALLKEV--------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           ++ L+  +        SP++G     +      K +V TG+L ++ R +A++ +  LGA 
Sbjct: 559 IDDLVNNIGIHWESAESPNLG----EIDGPFAGKTVVLTGSLNRLSRDEAKDKLAALGAK 614

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S+KTD++I G+  GSKL KA +LG+ +++E++ + LL++
Sbjct: 615 VTGSVSKKTDLVIAGEAAGSKLAKANELGIPVIDEDEMIRLLRE 658


>gi|291483102|dbj|BAI84177.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. natto
           BEST195]
          Length = 668

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 408/712 (57%), Gaps = 53/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A++    L + I+ +   YY   +P + D+EYD L +   AI    PDL     P+ P
Sbjct: 4   ETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTPDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +  +  KVTH  P LSL   +N +DLR F  R+    ++   + + + +E KI
Sbjct: 61  TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRV----RQAVGDDVAYNVELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I  IP  L +N    IEVRGE Y+ 
Sbjct: 117 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIP--LKMNRELSIEVRGEAYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F ALN+E I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+  + 
Sbjct: 175 KRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + L  +  LGF  N   ++      +++  +E+++ R+ LPY+IDG+V KVD    Q+
Sbjct: 235 QSQGLDFLDELGFKTNQERKKCGDIEEVITLIDELQAKRADLPYEIDGIVIKVDSLDQQE 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+L
Sbjct: 295 ELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED IK            +DIR+ D+V+VK+AG++IP+VV+++V +R  + + FS P+ 
Sbjct: 355 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSMPTE 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ +  
Sbjct: 404 CPECGSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+       +R  AD++ L + +     ++      G+ S  NL  SI K +  SLER 
Sbjct: 457 LFEEN----LVRNVADLYKLTKERVIQLERM------GEKSTENLISSIQKSKENSLERL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR +G++ A++LA ++ S +N  +               L+ V  +G+ +A A++
Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFESLENLKKASKE----------ELLAVDEIGEKMADAVI 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668
            ++     +  +  L +    ++ +  K V +E        K +V TG L+++ R++A+ 
Sbjct: 557 TYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKA 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  ++  +S+ TD++I G+  GSKL KAQ+L +++ NEEQ +  L++
Sbjct: 617 QIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668


>gi|262373317|ref|ZP_06066596.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
 gi|262313342|gb|EEY94427.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
          Length = 677

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 266/717 (37%), Positives = 404/717 (56%), Gaps = 59/717 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ R+    L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +++ P  
Sbjct: 7   IEQMRQ----LIQLIAKHNHAYYVMDQPTITDSEYDHLFHQLKALEQQYPEFMQADTPT- 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             NK+GG+       VTH++P LSL  ++N +DL  F  RI    ++  +  + + +E K
Sbjct: 62  --NKVGGQALSKFESVTHAVPMLSLGNVFNQDDLFAFARRID---ERLPNQKVQYEVELK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGE 190
           +DG  I++ YE G  +    RGDG +GED++  ++ I  +P++LS     IP+++EVRGE
Sbjct: 117 LDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKILSSQHQAIPQLLEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V + K+ F  LN +  A G K  ANPRNAA+G LR+L+P    +R L F+ +G+ +    
Sbjct: 177 VLMPKSGFEKLNADQEAKGEKTLANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPH 236

Query: 250 FA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 ++ L  +   GF +        +   +   Y +++  R  L  +IDG+V KVD+
Sbjct: 237 HGLTTMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQLERPNLKVEIDGMVVKVDD 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+QLG  +R PRW  ++KF  + A T++ +ID Q+GRTG LTPVARL PV +GG  +
Sbjct: 297 LKQQQQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLAPVFVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+  
Sbjct: 357 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVERVWAEFRPADAELV 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGLG 
Sbjct: 406 YLPTNCPVCDSPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGD 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     +R  ADI+ L   ++    K+ +I   G+ SV NL D+I+  +  
Sbjct: 460 RWVESLLHLD----LLRDVADIYHLHEHRE----KLLSIEKMGEKSVQNLIDAIDASKKT 511

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIR VG   AR LA    ++Q F    + + A N D   +L + P VGDI 
Sbjct: 512 TLARFIYALGIRGVGETTARMLAN---TFQTF----DALKAANID---ALKKTPDVGDIT 561

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664
           A+ IV+F+Q   N+  +E LL     + G H    ++     +  +  V TGTL+ + R 
Sbjct: 562 AEWIVDFFQAEHNLEVLERLL-----AAGIHWDAPTAPTRQPLNGESWVVTGTLESMGRD 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +A + +  LGA VS  +S KT  ++ G+  GSKL+KAQ+L +++MNE++FL  L QY
Sbjct: 617 EATQRLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAQKLDIRVMNEQEFLDFLAQY 673


>gi|170703080|ref|ZP_02893902.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
 gi|170132009|gb|EDT00515.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
          Length = 691

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 258/712 (36%), Positives = 396/712 (55%), Gaps = 60/712 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L      +    PDL     P+ P  ++GGE+ 
Sbjct: 20  LRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLVT---PDSPTQRVGGEVA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   +  ED+  F  R+     K  D      + + +  E K DG 
Sbjct: 77  GGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE G FV A+ RGDG +GEDV+  +R I +IP ++   ++P +++VRGEV + K 
Sbjct: 137 AISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254
           DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G    +      
Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L      G PVN          G++ ++ ++   R +LPYDIDG+VYKV+    Q +
Sbjct: 257 SALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVNRRDEQDR 316

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH
Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 376

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  P+ C
Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFVMPTEC 425

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D  
Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RFI
Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIRHVG   A+ LAK++ S       +  I+  + ++   L+ V  VG I+A++I +
Sbjct: 530 YGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESIHQ 579

Query: 615 FYQNPRNICAVEAL-------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           F+    N   +E L         E  P+     K     +  K +V TGTL  + R  A+
Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWAEGPPA----PKAPQGVLAGKTVVLTGTLPNLTRDAAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E++   LL+
Sbjct: 636 EMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDELHQLLE 687


>gi|331648073|ref|ZP_08349163.1| DNA ligase, NAD-dependent [Escherichia coli M605]
 gi|331042933|gb|EGI15073.1| DNA ligase, NAD-dependent [Escherichia coli M605]
          Length = 671

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E      P I   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPEPIIINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|323495433|ref|ZP_08100510.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
 gi|323310356|gb|EGA63543.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
          Length = 669

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 262/711 (36%), Positives = 403/711 (56%), Gaps = 51/711 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q +++L+ L + + YH   YY    P I D+EYD L R    I    P+L   + P+  
Sbjct: 3   QQIQEKLNQLRESLHYHGVKYYVEDSPEIPDAEYDRLMRELMEIEAQHPELVSLDSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPK 133
             ++GG        V H IP LSL+  ++  +L  F  R+  R    K D    F  EPK
Sbjct: 61  -QRVGGAPLDGFDSVRHEIPMLSLDNAFDDSELDAFHKRMSDRLSGTKLD---VFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ Y  G FV AA RGDG +GE+++  +R I  IP ++     PE +EVRGEV+
Sbjct: 117 LDGLAVSLLYVNGVFVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPERLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEI 249
           + K  F  LN++ +  G K + NPRNAA+G LR+L+ + IT  R L+F+ + +G      
Sbjct: 177 MPKEGFDKLNEQALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLSFYAYSVGVVEGAT 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            ++  YE   +++  G P+    R       + +YY ++ + R  LPY+IDG+V KVD  
Sbjct: 236 LSESHYERFLQLKGWGLPMCPETRLVANLEEVKAYYQDILTRRDALPYEIDGVVIKVDSI 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++
Sbjct: 296 AAQEQLGFVARAPRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            + VGD V+++RAG+VIP++V I+ + R  +A+   
Sbjct: 356 NATLHNADEIERL-----------GVMVGDCVVIRRAGDVIPQIVSIVSDRRPENAREIV 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A +++GLG++
Sbjct: 405 FPTNCPVCNSAVER----VEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLGEK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     +  PAD+F L      S   I  +   G  S  N+ D++ K +  +
Sbjct: 459 VIEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALVKAKETT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF++SLGIR VG   A +LAK++       + +  + A ++DD   LI V  +G I+A
Sbjct: 509 LPRFLYSLGIREVGEATAANLAKHF-------KTLEAVQAASHDD---LIEVQDIGAIVA 558

Query: 610 QAIVEFYQNPRNICAVEAL-LKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
             I  F+   +N   ++ L ++ V  P I   +++    +  K +V TG+L ++ R  A+
Sbjct: 559 SHITAFFAQDKNQMVIDDLRVQGVHWPDIEEKDQDAPQPLAGKVVVLTGSLSQLTRSDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTDI+  G+N GSKL KAQ LG++I  EE  + L+
Sbjct: 619 AALEGLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIRTEEDLIALM 669


>gi|15802944|ref|NP_288973.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 EDL933]
 gi|12516784|gb|AAG57530.1|AE005471_7 DNA ligase [Escherichia coli O157:H7 str. EDL933]
          Length = 671

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 408/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y   +  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYXXXEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP++CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTYCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWXAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|253999028|ref|YP_003051091.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4]
 gi|253985707|gb|ACT50564.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4]
          Length = 699

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 264/724 (36%), Positives = 390/724 (53%), Gaps = 64/724 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L ++I+ ++  YY    P + DSEYD L R   A+ HA P+L     P+ P  ++G
Sbjct: 27  QIRQLREQINLYNYQYYVLDDPSVPDSEYDRLFRELQALEHAHPELLT---PDSPTQRVG 83

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                +   V H    LSL   +   +L  F  RI           + + +EPK DG  I
Sbjct: 84  ASPLKAFASVQHRQAMLSLNNAFEEGELTAFDKRIRDALGIA---QVEYAVEPKFDGLAI 140

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           T+ YE G FV  A RGDG++GEDVS+ +R I  IP  L + N P +IEVRGEV + K DF
Sbjct: 141 TLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEVRGEVLMLKRDF 200

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN +    G K +ANPRNAA+G LR+L+P    TR L FF +GLG    +     +  
Sbjct: 201 DKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIAEGVPQLSTHAA 260

Query: 258 -LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +  +  L  PV++         G++ YY  + + R  LP+DIDG+VYKV+  + Q +LG
Sbjct: 261 AMDYLASLRLPVSDQRDTVQGLAGLLDYYTRIGAARPNLPFDIDGVVYKVNSIAQQNELG 320

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW ++HKF  ++A T +  ID+Q+GRTG +TPVARL+PV +GG  +TNATLHN+
Sbjct: 321 FVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGGVTVTNATLHNQ 380

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF----SFPS 432
           D I             +D+RVGD V V+RAG+VIP+VV +++ +R  D   +    +   
Sbjct: 381 DEID-----------RKDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYRLLEAINH 429

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S V+R  +       A  RCTGGL CSAQ+ + + HF SR A +IEGLG++ +D
Sbjct: 430 QCPVCGSHVIRQEDE------AVARCTGGLFCSAQRKQAVLHFASRRAIDIEGLGEKLVD 483

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      I   ADI+ L     +S  ++       + S  N+  +++  +  +L R
Sbjct: 484 QLVDGA----HIHTLADIYRLDLATLSSLDRM------AEKSAKNIIKALDASKATTLAR 533

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGIR+VG   A+ LA+Y+ S Q               D   L +VP VG I+A++I
Sbjct: 534 FIYALGIRNVGEATAKDLARYFGSLQALLAA----------DIEQLQQVPDVGPIVAESI 583

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKA 666
            +F   P N   ++ L       +G H             +  K LV TGTL  + R +A
Sbjct: 584 RQFLSEPHNQQVIQDL-----QDVGLHWTESDGAGTQQGVLTGKTLVLTGTLPTMSRDQA 638

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +  +   G  V+  +S+KTD ++ G+  GSKL KAQ+LGV +++E   L LL+   ++  
Sbjct: 639 KALIEAAGGKVAGSVSKKTDFVVAGEEAGSKLTKAQELGVAVLDENGLLALLEDKQSS-- 696

Query: 727 IHDD 730
            HDD
Sbjct: 697 -HDD 699


>gi|146615|gb|AAA24071.1| lig peptide [Escherichia coli]
          Length = 671

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLARFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|254371060|ref|ZP_04987062.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|151569300|gb|EDN34954.1| hypothetical protein FTBG_00816 [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 643

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 258/692 (37%), Positives = 396/692 (57%), Gaps = 58/692 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+   KPII DS+YD L R    + +  P     +  N  L+++GGE+      + H   
Sbjct: 2   YHTLDKPIISDSDYDKLFRLLQDLVNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKK 58

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL  ++++E+LR F  +I        +  I    EPK+DG  I+I Y+ GKF YA  R
Sbjct: 59  MTSLANVFSLEELRDFYDKI--------EYDIELECEPKMDGLAISIFYKNGKFDYAVTR 110

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG  GE VS  ++ I  +P  L+  N PE +EVRGE+ + K  FL+LN+ M     K +
Sbjct: 111 GDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTF 170

Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNN 270
           ANPRNAA+G +R L+   +  R L  + +G+G  S+  ++ + Q+E++Q ++  GF +++
Sbjct: 171 ANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISD 230

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
            +  A  F  +  Y+++M   R+ L YDIDGLV+KV+   LQ  +G  AR P+W I++KF
Sbjct: 231 NMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKF 290

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
             ++  + +L+++ Q+GRTG +TPVARL+PV +GG +++NATLHN + IK          
Sbjct: 291 PAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVIVSNATLHNINEIK---------- 340

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
             +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ    P+ CP+C S+ + ++N +  
Sbjct: 341 -RKDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQMVEMPTNCPVCDSK-IENVNDQ-- 396

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
              A +RCTGG  C AQ  ERLKHFVSR A +I+ LG + ++        A  I+ PADI
Sbjct: 397 ---AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLV----AANLIKYPADI 449

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           + L   Q T   ++         S  N+ DSI K +  SL RFIF++GI+ +G   + +L
Sbjct: 450 YKLNFEQLTGLERM------AAKSSQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDAL 503

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL- 629
           A ++ S ++F           +  +  LI +  +G+I+A  IV F+ +  NI  VE  L 
Sbjct: 504 ANHFGSLESF----------RDAKFEELIEINDIGEIMANNIVSFWHDSLNIKIVEEFLA 553

Query: 630 ---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
              K  +P    H  N S     K +V TG+ +   R +  + +  +GA V++ +S+KTD
Sbjct: 554 IGIKIQNPVKVEHAYNES--FTGKTVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTD 611

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 612 MVICGDNAGSKLTKAQELGVEVILEDNLKDLL 643


>gi|257454409|ref|ZP_05619671.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
 gi|257448175|gb|EEV23156.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
          Length = 675

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 268/715 (37%), Positives = 401/715 (56%), Gaps = 59/715 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q RK ++ L+Q    H+  YY    P++ DSEYD L++   A+  A+P L +S+ P    
Sbjct: 11  QMRKLIAQLKQ----HNHAYYVLDNPLLEDSEYDQLRQELVALETAYPQLVQSDSPT--- 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           N++G +      +VTH IP LSL  ++  +DL+ F+ R+         N   + +E K+D
Sbjct: 64  NQVGDKPLPFFTQVTHQIPMLSLGNLFTFDDLQNFMRRVNDRLADNQQNP-EYEVELKLD 122

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ Y+ G+F  A  RGDG +GED++  +R I  +P  L+++IP + EVRGEV + K
Sbjct: 123 GLAVSLLYQNGQFTQAVTRGDGQTGEDITQNVRTIRNLPLQLAIDIPRL-EVRGEVLMPK 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN +  A G K +ANPRNAA+G LR+L+P    +R L F+ + + +        Q
Sbjct: 182 AGFAKLNRDAQAKGEKTFANPRNAAAGSLRQLDPNIAKSRPLAFYAYSVNQGLPAEITTQ 241

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            + L  ++ LGF +++ ++   T   + +YY  +   RS LP++IDG V KV+  +LQ+Q
Sbjct: 242 SDALFWLKALGFSISD-IKIVQTAAQLQAYYQAVIEKRSHLPFEIDGTVIKVNSLALQEQ 300

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R PRW  ++KF  +   TRL  I+ Q+GRTG LTPV +LEPVN+GG  ++N TLH
Sbjct: 301 LGFLSREPRWATAYKFPAETVMTRLNAIEWQVGRTGQLTPVGKLEPVNVGGVTVSNVTLH 360

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+ L           DIR GD V V RAG+VIPKV  +  +ER  +AQ  S P+ C
Sbjct: 361 NIGEIQRL-----------DIRAGDMVSVHRAGDVIPKVTRVWTDERPANAQVVSLPTHC 409

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V+       G+ +A  RCTGGL C AQQ E L HFVSR A +I+GLG++ L  F
Sbjct: 410 PVCDSPVIM----PEGEALA--RCTGGLFCPAQQQEALIHFVSRKAMDIDGLGERWLINF 463

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+       ++  ADI+ L + +      + N+   G+ SV N+  +I K ++ +L RFI
Sbjct: 464 FEQG----IVKNVADIYALSKHRDA----LINLEKLGEKSVENMLAAIEKSKDTTLPRFI 515

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           F+LGI  VG   A +LA  +   Q   A  I            +L + P VG+  A +I 
Sbjct: 516 FALGIGGVGESTAMNLAMQFGDLQPLMAASIE-----------ALQKTPDVGEKTADSIF 564

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVS------SEIENKKLVFTGTLQKIQRHKAQ 667
           EF++   NI  +  LL+      G H + VS        ++ +  V TGTL+ + R +A+
Sbjct: 565 EFFRAEHNIEVINRLLQA-----GIHWQPVSQVPEGNQPLKGQSWVITGTLESMGRDEAK 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             +  LGA VS  +S KT  ++ G+  GSKL  A++LGVK++ E QF  LL  Y+
Sbjct: 620 AKLQALGAKVSGSVSAKTTALLAGEKAGSKLANAEKLGVKVVTEAQFTDLLNTYH 674


>gi|332092973|gb|EGI98039.1| DNA ligase, NAD-dependent [Shigella boydii 3594-74]
          Length = 671

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|301648064|ref|ZP_07247828.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
 gi|307139053|ref|ZP_07498409.1| NAD-dependent DNA ligase LigA [Escherichia coli H736]
 gi|331643032|ref|ZP_08344167.1| DNA ligase, NAD-dependent [Escherichia coli H736]
 gi|301073835|gb|EFK88641.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
 gi|331039830|gb|EGI12050.1| DNA ligase, NAD-dependent [Escherichia coli H736]
          Length = 671

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 412/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K ++NPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFSNPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|26248787|ref|NP_754827.1| NAD-dependent DNA ligase LigA [Escherichia coli CFT073]
 gi|170680446|ref|YP_001744602.1| NAD-dependent DNA ligase LigA [Escherichia coli SMS-3-5]
 gi|227887457|ref|ZP_04005262.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
 gi|300981618|ref|ZP_07175608.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
 gi|301046300|ref|ZP_07193464.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
 gi|81475373|sp|Q8FFC1|DNLJ_ECOL6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781328|sp|B1LMK5|DNLJ_ECOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|26109193|gb|AAN81395.1|AE016764_77 DNA ligase [Escherichia coli CFT073]
 gi|170518164|gb|ACB16342.1| DNA ligase, NAD-dependent [Escherichia coli SMS-3-5]
 gi|227835807|gb|EEJ46273.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
 gi|300301715|gb|EFJ58100.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
 gi|300408962|gb|EFJ92500.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
 gi|307554453|gb|ADN47228.1| DNA ligase [Escherichia coli ABU 83972]
 gi|315293473|gb|EFU52825.1| DNA ligase, NAD-dependent [Escherichia coli MS 153-1]
 gi|323977408|gb|EGB72494.1| DNA ligase [Escherichia coli TW10509]
          Length = 671

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 409/712 (57%), Gaps = 50/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 618 KARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|330912204|gb|EGH40714.1| DNA ligase [Escherichia coli AA86]
          Length = 671

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E      P I   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPEPIIINVEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|209764254|gb|ACI80439.1| DNA ligase [Escherichia coli]
          Length = 671

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP++CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTYCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIEQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|171322051|ref|ZP_02910925.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
 gi|171092642|gb|EDT37943.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
          Length = 691

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 258/716 (36%), Positives = 395/716 (55%), Gaps = 52/716 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q     + L  ++   +  YY   +P + D+EYD L      +    P+L     P+ P 
Sbjct: 12  QPEARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPELVT---PDSPT 68

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFT 129
            ++GGE+      V H  P LSL   +  ED+  F  R+     K  D        + + 
Sbjct: 69  QRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALNKTTDLAGSVTEPVEYA 128

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188
            E K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP ++   ++P +++VR
Sbjct: 129 CELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVR 188

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G   
Sbjct: 189 GEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLD 248

Query: 248 EI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +        +L      G PVN          G++ ++ ++   R +LPYDIDG+VYKV
Sbjct: 249 GVPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKV 308

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA
Sbjct: 309 NRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGA 368

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA 
Sbjct: 369 TVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAA 417

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GL
Sbjct: 418 EFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGL 471

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +D   +       +R PAD+F L          +  +  F + S  NL DS+ K +
Sbjct: 472 GEKIIDQLVELS----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAK 521

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFI+ LGIRHVG   A+ LAK++ S       +  I+  + ++   L+ V  VG 
Sbjct: 522 HTTLARFIYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGP 571

Query: 607 IIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           I+A++I +F+    N   +E L    K   P      K     +  K +V TGTL  + R
Sbjct: 572 IVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTR 631

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E+    LL+
Sbjct: 632 DAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|119472555|ref|ZP_01614603.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
 gi|119444879|gb|EAW26179.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
          Length = 672

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 407/713 (57%), Gaps = 57/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++++ L   +  H+  YY    P I D+EYD L R   A+    P+   ++ P     K+
Sbjct: 7   EQINHLRTLLEQHNYNYYVLDTPSIPDAEYDRLLRELSALETQNPEFLSADSPT---QKV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG       +V H +P LSL+  ++ ++   F  RI       D+  + F  EPK+DG  
Sbjct: 64  GGAALSKFEQVAHQVPMLSLDNAFSEDEFTGFNRRIKERLMSIDE--LTFCCEPKLDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++I Y  G  V AA RGDG +GE+++  ++ I  +P  L  + P+ +EVRGEV++    F
Sbjct: 122 VSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEVFMDSAGF 181

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE-IFAKGQY 255
             LN+E    G K + NPRNAA+G LR+L+ + IT  R L F+ +  G  ++    +  +
Sbjct: 182 EKLNNEAQKRGEKVFVNPRNAAAGSLRQLD-SKITAKRPLMFYAYSTGLVADGSIPEDHF 240

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L+K+   G P+    +        + YY+++ + RS L Y+IDG+V KV++ +LQ++L
Sbjct: 241 QQLEKLTDWGLPLCPETKLVEGPQAALDYYDDILTRRSELKYEIDGVVIKVNKKALQERL 300

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++NATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEEVTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHN 360

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L            ++VGD V+++RAG+VIP++  +++  R  DA+   FPS CP
Sbjct: 361 GDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPTDARDIVFPSACP 409

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           IC S V +      G+ VA  RCTGGL C AQ+ + +KHF SR A +I+GLG + +D   
Sbjct: 410 ICDSHVEK----VEGEAVA--RCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLV 463

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             E     I+ PAD+F L++         E++   G  S  NL  ++N+ +  +L +F++
Sbjct: 464 DRE----LIKTPADLFILKQGH------FESLERMGPKSAKNLVTALNEAKATTLAKFLY 513

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGIR  G   A++LA ++L+       + NII+ + +   SL +V  VGDI+A  +  F
Sbjct: 514 SLGIREAGEATAQNLANHFLT-------LENIISASVE---SLTQVSDVGDIVASHVRGF 563

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK------LVFTGTLQKIQRHKAQEY 669
           +    N+  V AL+++     G H   +S+  E+++       V TGTL  + R+ A+  
Sbjct: 564 FDEEHNLAVVNALIEQ-----GVHWPALSAPSEDEQPLAGLTYVLTGTLNTLNRNDAKAR 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + QLGA VS  +S KTD ++ G+  GSKL KAQ LG+ ++ E+  + LL+++N
Sbjct: 619 LQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEDGLIELLEKHN 671


>gi|260769097|ref|ZP_05878031.1| DNA ligase [Vibrio furnissii CIP 102972]
 gi|260617127|gb|EEX42312.1| DNA ligase [Vibrio furnissii CIP 102972]
          Length = 669

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/719 (36%), Positives = 407/719 (56%), Gaps = 63/719 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   + L+ L+  + YH   YY    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MQNVEQRLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEAQHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEP 132
           P  ++GG       +VTH IP LSL+  ++ ++L  F  R+  R    K   +  F  EP
Sbjct: 58  PSQRVGGAPLAGFEQVTHEIPMLSLDNAFDDDELNSFHRRMGDRVLAAK---TAKFCCEP 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  +++ Y  G  V AA RGDG +GE+++  +R I +IP R+     P  IEVRGEV
Sbjct: 115 KLDGLAVSLLYVDGVLVQAATRGDGTTGENITENVRTIKSIPLRLQGTGWPTRIEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SE 248
           ++ K  F  +N E +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G     
Sbjct: 175 FMPKAGFEKMNAEALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVIQGG 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 YE   +++  G P++   ++  +   + +YY ++ + RS LPY+IDG+V KVD+
Sbjct: 234 TLVDSHYERFLQLKGWGLPMSPETKRVESLDEVKAYYQDIMTRRSELPYEIDGVVIKVDD 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 294 IALQEQLGFVARAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQP 427
           +NATLHN D I+ L            +++GD V+++RAG+VIP++V  +VNE  P+ A+ 
Sbjct: 354 SNATLHNADEIERL-----------GVKIGDTVVIRRAGDVIPQIVS-VVNELRPETARE 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FP+ CP+CQS V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A +++GLG
Sbjct: 402 ILFPAQCPVCQSDVER----VEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLG 455

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     +  PAD+F L+  + T   ++      G  S  N+ +++N  + 
Sbjct: 456 DKVIEQLVDKE----MVSTPADLFRLRAGELTILERM------GPKSAQNIVNALNTAKA 505

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF++SLGIR VG   A +LA ++L+     +               LI VP VG I
Sbjct: 506 TTLPRFLYSLGIREVGEATAMNLAHHFLTLDAIREATIE----------QLIEVPDVGTI 555

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-------KKLVFTGTLQK 660
           +A  +  F+   RN   VE L+     ++G H + ++ + ++       K +V TGTL +
Sbjct: 556 VASHVHAFFTQERNQKVVEELI-----ALGIHWQAIAPKTDDEPQPLAGKVVVLTGTLSQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R  A+  +  LGA V+  +S+ TDI+  G+  GSKL KAQ+LG++I +E+  + +++
Sbjct: 611 LSRSDAKAALQALGAKVTGSVSKNTDILFAGEAAGSKLAKAQELGIEIRDEQDLIAMIR 669


>gi|117618613|ref|YP_855770.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166215386|sp|A0KHL9|DNLJ_AERHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117560020|gb|ABK36968.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 668

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/695 (36%), Positives = 400/695 (57%), Gaps = 59/695 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R    +    P+L   + P  P  ++GG+   +  +V H IP
Sbjct: 22  YYVLDNPTVPDAEYDRLMRELIVLEAEHPEL---KTPASPSVRVGGQPLTAFKQVRHEIP 78

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ +++ E+L+ F  R+    + K + S  F  EPK+DG  +++ Y  G+ V AA R
Sbjct: 79  MLSLDNVFSGEELQAFEQRMRD--RLKREVSFTFCCEPKLDGLAVSLLYVAGQLVQAATR 136

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211
           GDG +GE+++  +R I  IP  LSL     P  +EVRGEV++ K  F A+N + +A G K
Sbjct: 137 GDGTTGEEITENVRTIKAIP--LSLRGEGWPARLEVRGEVFMPKAGFEAMNAKALAAGEK 194

Query: 212 PYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
            + NPRNAA+G LR+L+     +R L F+ +G+G   E      +  L +++  G P++ 
Sbjct: 195 VFVNPRNAAAGSLRQLDSRITASRPLAFYAYGVGVGGEQLGGSHFGRLNQLKEWGLPLSP 254

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
            V+      G  ++++++ + R  LPY+IDG+VYKVD   LQ++LG  AR+PRW  +HKF
Sbjct: 255 EVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELGFVARAPRWATAHKF 314

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
             ++  T L +++ Q+GRTG +TPVA+L+PV +GG  ++NATLHN D I+ L        
Sbjct: 315 PAQEEMTELENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNADEIERL-------- 366

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
               + +GD V+V+RAG+VIP++V ++  +R  DA+   FP+ CP+C S V R      G
Sbjct: 367 ---GVMIGDTVIVRRAGDVIPQIVAVVEAQRPADARAILFPTECPVCGSAVER----LEG 419

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
           + V   RC+GGL C AQ+ E +KHF +R A +++GLG + ++      D    ++ PAD+
Sbjct: 420 EAVT--RCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLV---DKGL-VKTPADL 473

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           F+L   Q     ++      G  S  NL  +I+  R+ +L RF+F+LGIR VG   A +L
Sbjct: 474 FSLNAIQLAGLERM------GQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNL 527

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A ++L+       ++ + A + +    L+ V  VGDI+A+ +  F + P NI  +EALL 
Sbjct: 528 ANHFLT-------LDALRAASVEQ---LLEVADVGDIVAKHVYYFLRQPHNIEVLEALL- 576

Query: 631 EVSPSIGRH----EKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
               + G H    EK  +SE     K  V TGTL  + R+ A+  +  LGA V+  +S K
Sbjct: 577 ----AAGIHWPAIEKKEASEQPFAGKTFVLTGTLTTLSRNDAKAALQALGAKVAGSVSAK 632

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           TD+++ G+  GSKL KAQ+LG+ + +EE+    LQ
Sbjct: 633 TDVLVAGEAAGSKLVKAQELGITVWSEEELQQALQ 667


>gi|167549563|ref|ZP_02343322.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205325268|gb|EDZ13107.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 671

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/713 (35%), Positives = 406/713 (56%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++
Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKATT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLETLQ-------AATIDE---LQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ R  
Sbjct: 558 THVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669


>gi|294649516|ref|ZP_06726937.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824577|gb|EFF83359.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
           19194]
          Length = 675

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 268/719 (37%), Positives = 399/719 (55%), Gaps = 59/719 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ R+    L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +++ P  
Sbjct: 7   IEQMRQ----LIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTPT- 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             NK+GG+       VTH +P LSL  ++N E+L  F  RI    ++  +  + + +E K
Sbjct: 62  --NKVGGQALSKFESVTHVVPMLSLGNVFNQEELFAFARRID---ERLPNQKVQYEVELK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGE 190
           +DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VLS     IP+++EVRGE
Sbjct: 117 LDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSGQSQAIPQLLEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V + K  F  LN +  A G K +ANPRNAA+G LR+L+P    +R L F+ +G+ +    
Sbjct: 177 VLMPKQGFEKLNADQAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQPH 236

Query: 250 FA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 ++ L  +   GF +        +   +   Y +++  R  L  +IDG+V KVD+
Sbjct: 237 HGLATMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQQERPDLNVEIDGMVVKVDD 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+QLG  +R PRW  ++KF  + A T++ +ID Q+GRTG LTPVARL PV +GG  +
Sbjct: 297 LKQQQQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+  
Sbjct: 357 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWAEFRPTDAEIV 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGLG 
Sbjct: 406 HLPTNCPVCDSPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGD 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     ++  ADI+ L     T   K+  I   G+ SV NL D+I   +  
Sbjct: 460 RWVESLLHLD----LLKDVADIYHL----HTHREKLLTIEKMGEKSVQNLIDAIEASKKT 511

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI+ LGIR VG   AR LA       N  Q ++ + A + +   SL + P VGDI 
Sbjct: 512 TLARFIYGLGIRGVGETTARMLA-------NTFQTLDALKAADVE---SLKKTPDVGDIT 561

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664
           A+ I +F+Q P NI  ++ L+     + G H    ++     +  +  V TGTL+ + R 
Sbjct: 562 AEWIADFFQAPHNIEVLDRLM-----AAGIHWDAPTAPTRQPLNGESWVVTGTLESMGRD 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +A + +  LGA VS  +S KT  ++ G+  GSKLEKAQ+L +++MNE++FL  L QY T
Sbjct: 617 EATQRLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAQKLEIRVMNEQEFLDFLAQYQT 675


>gi|68057854|gb|AAX88107.1| DNA ligase [Haemophilus influenzae 86-028NP]
          Length = 679

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 263/715 (36%), Positives = 415/715 (58%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 14  QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 70

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 71  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 123

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 124 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 183

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 184 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 242

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           I      Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 243 IDLPTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 303 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 363 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 410

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 411 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 464

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+   +
Sbjct: 465 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 514

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L+RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+
Sbjct: 515 STTLDRFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 564

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 565 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 619

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 620 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVLTEEEFL 674


>gi|168466836|ref|ZP_02700690.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195630762|gb|EDX49354.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 671

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 406/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAVKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|324112923|gb|EGC06899.1| DNA ligase [Escherichia fergusonii B253]
          Length = 671

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
                F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHAHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|54296979|ref|YP_123348.1| DNA ligase [Legionella pneumophila str. Paris]
 gi|81370862|sp|Q5X6E6|DNLJ_LEGPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53750764|emb|CAH12171.1| DNA ligase [Legionella pneumophila str. Paris]
          Length = 673

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/706 (36%), Positives = 388/706 (54%), Gaps = 52/706 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P+ P  +
Sbjct: 7   KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEPKID 135
           + G  + +   V H  P LSL  ++ I++L+ FI R     +K D+    + F  EPK+D
Sbjct: 64  VSGTPSDAFMPVAHKQPMLSLSNVFTIDELKAFIKRAI---EKLDEPNQQLVFACEPKLD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G   +AA RGDG  GE+++A I+ I ++P R+   N P++IEVRGEVYI 
Sbjct: 121 GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252
           K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + + +G   +     
Sbjct: 181 KADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYSIGACEDYKLPN 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D  SLQ
Sbjct: 241 SHLEQLNLLKEFGFRVSPETRRAIGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  ++NAT
Sbjct: 301 QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+    P 
Sbjct: 361 LHNFDEIT-----------RKDIRIGDTVIIRRAGDVIPEVVSVILEKRPINARKIELPK 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG   +D
Sbjct: 410 NCPVCGSEVVREADE------AIARCIGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLID 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                 D      + AD++ L  +       + N+   G+ S  NL  ++ K +  +  R
Sbjct: 464 QLV---DEGIVHHL-ADLYELDLQ------TLANLPRMGEKSAKNLLSALEKSKKTTFNR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR +G   AR LA++Y   ++        +   ND          +G + A  +
Sbjct: 514 FLYALGIREIGEAGARVLAEHYCDVESLKSATIEELMTLND----------IGPVAASHV 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           V F+    N+  ++ LL E+     + EK   N  +    K +V TGTL  + R +A+  
Sbjct: 564 VHFFAQAHNLEVIDRLL-ELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSAMGREEAKAK 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +  LGA VS  +S KTD +I G   GSKL KA +LGV I+ E++FL
Sbjct: 623 LLALGAKVSGSVSSKTDYVIAGSEAGSKLIKATELGVAIIEEDEFL 668


>gi|312882689|ref|ZP_07742426.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369650|gb|EFP97165.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 670

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/705 (35%), Positives = 397/705 (56%), Gaps = 47/705 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L+ L Q +  H   YY    P I DSEYD L R    +    P+L   + P     ++G
Sbjct: 8   KLNHLRQLLHSHGIKYYVEDNPQIPDSEYDRLMRELLELESQHPELVSLDSPT---QRVG 64

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+       V H IP LSL+  ++ ++L  F  R+    +  D+N   F  EPK+DG  +
Sbjct: 65  GKPLDGFESVQHEIPMLSLDNAFDDQELDAFQKRMQD--RLGDENIGLFCCEPKLDGLAV 122

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE G  + AA RGDG +GE+++  +R I +IP  L   N P  IEVRGEV++ K  F
Sbjct: 123 SLLYENGVLIQAATRGDGATGENITENVRTIKSIPLQLQGSNWPARIEVRGEVFMPKAGF 182

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYE 256
             LN + +  G K + NPRNAA+G LR+L+     +R L+F+ + +G   E   +   YE
Sbjct: 183 DKLNQQALKKGEKVFVNPRNAAAGSLRQLDSKITASRPLSFYAYSVGVVEEGELSSSHYE 242

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
              ++   G P+     Q +    +  +Y ++ + R  L Y+IDG+V KVD  ++Q++LG
Sbjct: 243 RFIQLTRWGLPMCPETLQVDGLSAVKDFYQDILNRRDDLAYEIDGVVIKVDNVAVQERLG 302

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L+PV +GG  ++NATLHN 
Sbjct: 303 FVARAPRWAIAYKFPAQEEITVLNDVEFQVGRTGAITPVAKLKPVFVGGVTVSNATLHNA 362

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            + +GD V+++RAG+VIP++V +++  R    +P +FP  CP+
Sbjct: 363 DEIERL-----------GVMIGDEVVIRRAGDVIPQIVSVVLERRSDTTKPITFPICCPV 411

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S + R      G+ VA  RCTGG  C AQ+ E LKHFVSR A +++GLG++ ++    
Sbjct: 412 CHSEIER----LDGEAVA--RCTGGFVCQAQRKEALKHFVSRKALDVDGLGEKVIEQLVD 465

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     +  PAD+F L   Q +   ++      G  S  N+ D++   ++ +L RF++S
Sbjct: 466 RE----LVSTPADLFKLSPHQLSVLERM------GPKSAKNVVDALEHSKSTTLSRFLYS 515

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +LAK++       + + NI A  +D   +LI V  +GDI+A+ I  F+
Sbjct: 516 LGIREVGEATATNLAKHF-------KTLANITAAPHD---ALIEVQDIGDIVAKHITAFF 565

Query: 617 QNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
              +N   ++ LL +      I  +  N    ++ K +V TG+L ++ R  A+E +  LG
Sbjct: 566 SQQQNQTVIDDLLSQGIEWSDIEDNHANTPQVLQGKVVVLTGSLSQLNRSDAKEALESLG 625

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A V+  +S+KTDI+  G+N GSKL KAQ LG++I  E+  + L++
Sbjct: 626 AKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIRTEQDLVALIR 670


>gi|207857840|ref|YP_002244491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|254781409|sp|B5R3V4|DNLJ_SALEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206709643|emb|CAR33993.1| DNA ligase [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
          Length = 671

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/716 (34%), Positives = 403/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +       +           L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATID----------ELQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + V S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEVDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|168238909|ref|ZP_02663967.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734182|ref|YP_002115493.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|254781415|sp|B4TQF8|DNLJ_SALSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194709684|gb|ACF88905.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288317|gb|EDY27698.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 671

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 406/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEMIRLL 669


>gi|161761269|ref|YP_248767.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae 86-028NP]
 gi|166215835|sp|Q4QLJ0|DNLJ_HAEI8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|309973429|gb|ADO96630.1| NAD-dependent DNA ligase [Haemophilus influenzae R2846]
          Length = 670

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/715 (36%), Positives = 415/715 (58%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           I      Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 234 IDLPTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+   +
Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L+RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+
Sbjct: 506 STTLDRFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVLTEEEFL 665


>gi|93005182|ref|YP_579619.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5]
 gi|122989955|sp|Q1QDW8|DNLJ_PSYCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|92392860|gb|ABE74135.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5]
          Length = 691

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 268/698 (38%), Positives = 389/698 (55%), Gaps = 57/698 (8%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF-KV 89
           H+  YY    PI+ DSEYD L+R    +   +PDL +   P+ P+N++G +M LS F +V
Sbjct: 39  HNYAYYVLDNPILEDSEYDQLRRSLLELEEEYPDLIQ---PDSPINQVG-DMPLSAFTQV 94

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
           TH IP LSL  ++  +DLR F+ R+          S  + +E K+DG  ++++Y  GKFV
Sbjct: 95  THDIPMLSLGNVFEYDDLRDFMRRVNDRLSVAQ-QSPEYEMELKLDGLAVSLKYAYGKFV 153

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-----EIIEVRGEVYISKNDFLALNDE 204
            A  RGDG +GED++   + I  +P    L IP     E++EVRGEV + K  F  LN  
Sbjct: 154 QAVTRGDGQTGEDITQNAKTIRNLP----LWIPAASDIELLEVRGEVLMPKAGFERLNRL 209

Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
               G K +ANPRNAA+G LR+L+P    +R L F+ + + +      K Q   L  ++ 
Sbjct: 210 AEEKGDKTFANPRNAAAGSLRQLDPAIAASRPLAFYCYSVNQGLPEHIKTQSAALAWLKT 269

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           +GF V+  V          +YY  +K  R  LP++IDG+V KV+  +LQ+QLG  +R PR
Sbjct: 270 IGFTVS-AVEVVQNPREAQAYYESVKETRGDLPFEIDGMVIKVNSLALQQQLGFLSREPR 328

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W  ++KF  +   TRL  I+ Q+GRTG +TPV +LEPV +GG  ++N TLHN   I+ L 
Sbjct: 329 WATAYKFPAETVMTRLHAIEWQVGRTGAITPVGKLEPVKVGGVTVSNVTLHNFGEIQRL- 387

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                     D+R GD V V RAG+VIPKV  +  ++R  +++P   PS CP+C S VV 
Sbjct: 388 ----------DVRAGDMVSVHRAGDVIPKVTRVWTDQRPENSEPVKLPSTCPVCDSPVVL 437

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
              PK   L    RCTGGL C AQQ+E L HFVSR A +I+GLG   L  FF+       
Sbjct: 438 ---PKDEALA---RCTGGLFCPAQQVEALIHFVSRRAMDIDGLGASWLISFFEHG----L 487

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           ++  ADI+ L   Q+   T    +   G+ SV N+  +I   +  +L RFI++LGIR VG
Sbjct: 488 VKTVADIYQLHNHQEELIT----LEKLGEKSVQNILSAIEASKQTTLARFIYALGIRGVG 543

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A          QN AQ+  ++ A  +     L+  P VG I A+   +F++ P NI 
Sbjct: 544 ETTA----------QNLAQQFGDLDALMSASIEKLLLTPDVGAITAELTYKFFRAPHNIE 593

Query: 624 AVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
            + A L+E      + E+ V+SE   ++ +  V TG L  + R +A+  +  LGA VS  
Sbjct: 594 VINA-LREAGVHWDKVEQ-VASEGLPLDGQTWVITGALDSMARDEAKAKLQALGAKVSGS 651

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S KT  ++ GD  GSK+ KA++LGVK++ EE+FL L+
Sbjct: 652 ISAKTTALLAGDKAGSKMAKAEKLGVKVVGEEEFLVLV 689


>gi|212710592|ref|ZP_03318720.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
           30120]
 gi|212686673|gb|EEB46201.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
           30120]
          Length = 678

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/707 (34%), Positives = 404/707 (57%), Gaps = 49/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++ +L+Q++ +H+  Y+    P I D EYD L +   A+    P+L  ++ P     ++
Sbjct: 12  QKIDALKQQLRHHEYLYHVMDAPEIPDVEYDKLMQELKALEAEHPELITTDSPT---QRV 68

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G     +   V H IP LSL+ +++ E    F  R+       +   + F  E K+DG  
Sbjct: 69  GAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVKDRLH--NHTELTFCCELKLDGLA 126

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G+ V AA RGDG  GE+++A +R I  IP R+   NIP  +E+RGEV++ +  
Sbjct: 127 VSLLYENGELVQAATRGDGTVGENITANVRTIKAIPLRLRGDNIPARVEIRGEVFMPQKG 186

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAKGQY 255
           F A+N+E      K +ANPRNAA+G LR+L+P     R L F+ +G+G    +      Y
Sbjct: 187 FEAMNEEARKTDGKIFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGKTLPDTHY 246

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L + +  G PV+  V+       ++ +Y+ ++ IR TL +DIDG+V KV++ ++Q++L
Sbjct: 247 ERLMQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGFDIDGVVIKVNDIAIQEEL 306

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW  + KF  ++  T L D++ Q+GRTG +TPVARLEPV + G +++NATLHN
Sbjct: 307 GFVSRAPRWATAFKFPAQEQITLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLHN 366

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L            +R+GD V+++RAG+VIP++V +++++R  D++   FP+ CP
Sbjct: 367 ADEIDRL-----------GVRIGDTVVIRRAGDVIPQIVSVVMDKRPADSREIIFPTHCP 415

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S    D+    G+ VA  RCTGGL C AQ  E LKHFVSR A +++G+G + ++   
Sbjct: 416 VCNS----DIERVEGEAVA--RCTGGLTCGAQLKESLKHFVSRRAMDVDGMGDKIIEQLV 469

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            +E  A + ++           Q S  K+  +   G  S   L D++ K +  +L RFI+
Sbjct: 470 DAEYVANAAQL----------YQLSAGKLTGLERMGPKSAQKLIDALEKSKQTTLARFIY 519

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A +LA +Y S       ++ ++A + D   SL  V  +G+++A+ +V F
Sbjct: 520 ALGIREVGEATAANLAAHYAS-------LDAVMAADED---SLKTVQDIGEVVAKHVVHF 569

Query: 616 YQNPRNICAVEALLKEVS---PSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++   N   +  LL   +   P +   +   + S    K +V TG++  + R  A++ + 
Sbjct: 570 FREEHNRQVIHDLLTIANIHWPEVKVINSAEIDSPFAGKTVVLTGSMSTLSRDDAKDKLV 629

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            LGA V+  +S+KTD++I G+  GSKL KA +LG+K+++EE+ + LL
Sbjct: 630 ALGAKVAGSVSKKTDLVIAGEAAGSKLAKATELGIKVIDEEELIRLL 676


>gi|254374741|ref|ZP_04990222.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548]
 gi|151572460|gb|EDN38114.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548]
          Length = 678

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 269/728 (36%), Positives = 408/728 (56%), Gaps = 65/728 (8%)

Query: 6   LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + P E  SI+    A+ EL +    L   +S     Y+   KPII DS+YD L R    +
Sbjct: 1   MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +  P     +  N  L+++GGE+      + H     SL  ++++E+LR F  +I    
Sbjct: 61  VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYGKI---- 113

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
               +  I    EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L+
Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169

Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
             N PE +EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L
Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229

Query: 237 NFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
             + +G+G  S+ F   + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ 
Sbjct: 230 KLYSYGIGYFSKDFVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDGLV+KV+   LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TP
Sbjct: 290 LAYDIDGLVFKVNNIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG +++NATLHN + IK            +DIRV DRV+V+RAG+VIP+VV
Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVSDRVIVRRAGDVIPEVV 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R PDAQ    P  CP+C S  + ++N +     A +RCTGG  C AQ  ERLKH
Sbjct: 399 KSLPQYRKPDAQVVEMPISCPVCDS-AIENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I+ LG + ++        A  I+ PADI+ L   Q T   ++      G  S
Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFDQLTGLERM------GAKS 502

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N+ DSI K +  SL RFIF++GI+ +G   +  LA ++ S ++F           +  
Sbjct: 503 SQNVLDSIKKSKTPSLARFIFAIGIKDIGEVSSDVLANHFGSLESF----------RDAK 552

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650
           +  LI +  +G+I+A  IV F+ +  NI  VE LL    K  +P    H  N S     K
Sbjct: 553 FEELIEINDIGEIMANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNES--FTGK 610

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+ +   R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ 
Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670

Query: 711 EEQFLFLL 718
           E+    LL
Sbjct: 671 EDNLKDLL 678


>gi|169797009|ref|YP_001714802.1| DNA ligase [Acinetobacter baumannii AYE]
 gi|169149936|emb|CAM87830.1| DNA ligase [Acinetobacter baumannii AYE]
          Length = 691

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/723 (36%), Positives = 398/723 (55%), Gaps = 55/723 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L +++ P
Sbjct: 14  MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 73

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+GG+       VTH +P LSL  ++N EDL  F  R+    ++  +  + + +E
Sbjct: 74  T---TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247

Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA       N  Q +  + A N +   +L + P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662
           I A+ I +F+  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ 
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 627

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y 
Sbjct: 628 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 687

Query: 723 TTL 725
            TL
Sbjct: 688 QTL 690


>gi|239501241|ref|ZP_04660551.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB900]
          Length = 678

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/723 (36%), Positives = 398/723 (55%), Gaps = 55/723 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L +++ P
Sbjct: 1   MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+GG+       VTH +P LSL  ++N EDL  F  R+    ++  +  + + +E
Sbjct: 61  T---TKVGGQALSKFESVTHVVPMLSLGNVFNKEDLFAFARRVE---ERLPNQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234

Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA       N  Q +  + A N +   +L + P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662
           I A+ I +F+  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ 
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 614

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y 
Sbjct: 615 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 674

Query: 723 TTL 725
            TL
Sbjct: 675 QTL 677


>gi|168231967|ref|ZP_02657025.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194471791|ref|ZP_03077775.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194458155|gb|EDX46994.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205333574|gb|EDZ20338.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 671

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669


>gi|213156587|ref|YP_002318248.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
 gi|215484469|ref|YP_002326704.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
 gi|301347734|ref|ZP_07228475.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB056]
 gi|301512482|ref|ZP_07237719.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB058]
 gi|301594386|ref|ZP_07239394.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB059]
 gi|221222446|sp|A3M2U3|DNLJ_ACIBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254778154|sp|B7GZ71|DNLJ_ACIB3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254778155|sp|B7I790|DNLJ_ACIB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781253|sp|B0V8E4|DNLJ_ACIBY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193076578|gb|ABO11237.2| DNA ligase [Acinetobacter baumannii ATCC 17978]
 gi|213055747|gb|ACJ40649.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
 gi|213986610|gb|ACJ56909.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
          Length = 678

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/723 (36%), Positives = 398/723 (55%), Gaps = 55/723 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L +++ P
Sbjct: 1   MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+GG+       VTH +P LSL  ++N EDL  F  R+    ++  +  + + +E
Sbjct: 61  T---TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234

Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA       N  Q +  + A N +   +L + P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662
           I A+ I +F+  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ 
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 614

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y 
Sbjct: 615 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 674

Query: 723 TTL 725
            TL
Sbjct: 675 QTL 677


>gi|260555699|ref|ZP_05827919.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606]
 gi|260410610|gb|EEX03908.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606]
          Length = 691

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 264/723 (36%), Positives = 398/723 (55%), Gaps = 55/723 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L +++ P
Sbjct: 14  MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 73

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+GG+       VTH +P LSL  ++N EDL  F  R+    ++  +  + + +E
Sbjct: 74  T---MKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I+I YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 128 LKLDGLAISIWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247

Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA       N  Q +  + A N +   +L + P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662
           I A+ I +F+  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ 
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 627

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y 
Sbjct: 628 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 687

Query: 723 TTL 725
            TL
Sbjct: 688 QTL 690


>gi|170767420|ref|ZP_02901873.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
 gi|170123754|gb|EDS92685.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
          Length = 671

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/717 (34%), Positives = 407/717 (56%), Gaps = 60/717 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQKLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    +  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V    +   ++++Y +++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLMQFKEWGLPVSDRVTLCESAEEVLAFYRKVEEDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G 
Sbjct: 292 NSLAQQEELGFVARAPRWAVAFKFPAQEQMTYVRDVEFQVGRTGAITPVARLEPVHVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVG 605
             +  RF+++LGIR VG   A  LA Y+ + +   A  I             L +VP VG
Sbjct: 505 ETTFARFLYALGIREVGEATATGLAAYFGTLETLEAASIEE-----------LQKVPDVG 553

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            ++A  +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++
Sbjct: 554 IVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQM 612

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R  A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 613 SRDDAKARLIELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|315180839|gb|ADT87753.1| DNA ligase [Vibrio furnissii NCTC 11218]
          Length = 669

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 260/719 (36%), Positives = 406/719 (56%), Gaps = 63/719 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   + L+ L+  + YH   YY    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MQNVEQRLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEARHPELVT---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEP 132
           P  ++GG       +VTH IP LSL+  ++ ++L  F  R+  R    K   +  F  EP
Sbjct: 58  PSQRVGGAPLAGFEQVTHEIPMLSLDNAFDDDELNSFHRRMGDRVLAAK---TAKFCCEP 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  +++ Y  G  V AA RGDG +GE+++  +R I +IP R+     P  IEVRGEV
Sbjct: 115 KLDGLAVSLLYVDGVLVQAATRGDGTTGENITENVRTIKSIPLRLQGTGWPTRIEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SE 248
           ++ K  F  +N E +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G     
Sbjct: 175 FMPKAGFEKMNAEALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVIQGG 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 YE   +++  G P++   ++  +   +  YY ++ + RS LPY+IDG+V KVD+
Sbjct: 234 TLVDSHYERFLQLKGWGLPMSPETKRVASLDEVKVYYQDIMTRRSELPYEIDGVVIKVDD 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 294 IALQEQLGFVARAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQP 427
           +NATLHN D I+ L            +++GD V+++RAG+VIP++V  +VNE  P+ A+ 
Sbjct: 354 SNATLHNADEIERL-----------GVKIGDTVVIRRAGDVIPQIVS-VVNELRPETARE 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FP+ CP+CQS V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A +++GLG
Sbjct: 402 ILFPAQCPVCQSDVER----IEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLG 455

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     +  PAD+F L+  + T   ++      G  S  N+ +++N  + 
Sbjct: 456 DKVIEQLVDKE----MVSTPADLFRLRAGELTVLERM------GPKSAQNIVNALNTAKA 505

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF++SLGIR VG   A +LA ++L+     +               LI VP VG I
Sbjct: 506 TTLPRFLYSLGIREVGEATAMNLAHHFLTLDAIREATIE----------QLIEVPDVGTI 555

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-------KKLVFTGTLQK 660
           +A  +  F+   RN   VE L+     ++G H + ++ + ++       K +V TGTL +
Sbjct: 556 VASHVHAFFAQERNQKVVEELI-----ALGIHWQAIAPKTDDEPQPLAGKVVVLTGTLSQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R  A+  +  LGA V+  +S+ TDI+  G+  GSKL KAQ+LG++I +EE  + +++
Sbjct: 611 LSRSDAKAALQALGAKVTGSVSKNTDILFAGEAAGSKLAKAQELGIEICDEEDLIAMIR 669


>gi|260550982|ref|ZP_05825187.1| DNA ligase [Acinetobacter sp. RUH2624]
 gi|260405930|gb|EEW99417.1| DNA ligase [Acinetobacter sp. RUH2624]
          Length = 691

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 264/723 (36%), Positives = 398/723 (55%), Gaps = 55/723 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L +++ P
Sbjct: 14  MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQTDSP 73

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+GG+       VTH +P LSL  ++N EDL  F  R+    ++  +  + + +E
Sbjct: 74  T---TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCE 247

Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R +L  +IDG+V KV
Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPSLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  +A+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA       N  Q +  + A N +    L + P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---VLKKTPDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662
           I A+ I +F+  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ 
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 627

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y 
Sbjct: 628 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKATKLGIPVMNETDFLSLMASYG 687

Query: 723 TTL 725
            TL
Sbjct: 688 QTL 690


>gi|205353534|ref|YP_002227335.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|254781410|sp|B5RCP9|DNLJ_SALG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|205273315|emb|CAR38285.1| DNA ligase [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326628629|gb|EGE34972.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 671

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/716 (34%), Positives = 403/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIEQL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +       +           L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATID----------ELQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|332852097|ref|ZP_08433924.1| DNA ligase [Acinetobacter baumannii 6013150]
 gi|332867495|ref|ZP_08437648.1| DNA ligase [Acinetobacter baumannii 6013113]
 gi|332872654|ref|ZP_08440622.1| DNA ligase [Acinetobacter baumannii 6014059]
 gi|332729469|gb|EGJ60808.1| DNA ligase [Acinetobacter baumannii 6013150]
 gi|332733912|gb|EGJ65057.1| DNA ligase [Acinetobacter baumannii 6013113]
 gi|332739183|gb|EGJ70042.1| DNA ligase [Acinetobacter baumannii 6014059]
          Length = 683

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/723 (36%), Positives = 398/723 (55%), Gaps = 55/723 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L +++ P
Sbjct: 6   MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 65

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+GG+       VTH +P LSL  ++N EDL  F  R+    ++  +  + + +E
Sbjct: 66  T---TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 119

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 120 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 180 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 239

Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 240 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 300 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 360 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 408

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 409 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 462

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +
Sbjct: 463 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 514

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA       N  Q +  + A N +   +L + P VGD
Sbjct: 515 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 564

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662
           I A+ I +F+  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ 
Sbjct: 565 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 619

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y 
Sbjct: 620 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 679

Query: 723 TTL 725
            TL
Sbjct: 680 QTL 682


>gi|204929538|ref|ZP_03220612.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321257|gb|EDZ06457.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 671

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEMIRLL 669


>gi|197247622|ref|YP_002147380.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|254781407|sp|B5F0F5|DNLJ_SALA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197211325|gb|ACH48722.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 671

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|224369899|ref|YP_002604063.1| LigA1 [Desulfobacterium autotrophicum HRM2]
 gi|254781310|sp|C0QJ86|DNLJ_DESAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|223692616|gb|ACN15899.1| LigA1 [Desulfobacterium autotrophicum HRM2]
          Length = 685

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 257/719 (35%), Positives = 401/719 (55%), Gaps = 62/719 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++ +KE   L +++  H+  Y+    P+I D EYD + +R  AI   FP+L+    P+
Sbjct: 7   SFDRIKKEARLLREQLHVHNINYHVKDDPVISDGEYDRMMQRLIAIETQFPELS---TPD 63

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  +IG +   +     H+IP  SL+  ++ +D+  F  R  +     D   I +T+EP
Sbjct: 64  SPTRRIGAKALTAFETAEHAIPMQSLDNAFSDQDVIDFHNRTAKILNTSD---IRYTVEP 120

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVR 188
           K+DG  + +RYE+G    A  RGDG  GE ++   R IP++P  L+      IP+++EVR
Sbjct: 121 KLDGVAVELRYEQGSLTLALTRGDGTMGEVITDNARTIPSVPLKLAPAGNGTIPDVLEVR 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEV I+  DF  LN + +A G   +ANPRNAA+G LR+L+      R L  FV+G+G+  
Sbjct: 181 GEVIINSKDFEGLNKKRLATGEPLFANPRNAAAGSLRQLDSRVTAKRPLEIFVYGVGRAQ 240

Query: 248 EIFAK----GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           E+ A         +L+ ++ LGF +N  +R   +   ++  +   +++R  L Y+IDG+V
Sbjct: 241 ELMANFDIGSHSALLESLKRLGFRINPLIRSGLSLTEVLDRFKAFETMRQDLDYEIDGMV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD+   Q++LG +ARSPRW I++KF   + +T + DI +Q+GRTG LTPVA LEPVNI
Sbjct: 301 IKVDDIVFQERLGTKARSPRWAIAYKFPAMEETTVINDIIVQVGRTGTLTPVAILEPVNI 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++  A+LHN+D I+            +DIR+ D VLVKRAG+VIPKVV  +   R  
Sbjct: 361 GGVMVARASLHNQDEIQ-----------NKDIRINDTVLVKRAGDVIPKVVKPVTALRTG 409

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + F  P+ CP+C S V R  N       AA +C    +C AQ  +RLKHFVS+  F++
Sbjct: 410 SERVFVMPTHCPVCHSPVRRLDNE------AAVKCINA-SCKAQLKQRLKHFVSKGGFDM 462

Query: 484 EGLGKQQLDFFF-KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           EGLG + +D    ++   +F     AD+FTL R    +  ++      G+ S TN+  +I
Sbjct: 463 EGLGTKLIDQLVDRTLVGSF-----ADLFTLDRETLAAMDRM------GEKSATNIVQAI 511

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + + I L+RF+F+LG+ H G   A+ L+  + + +   +              +L  + 
Sbjct: 512 ERSKRIPLKRFLFALGMAHTGESAAQLLSSTFFTLEALLKASAE----------ALGAIE 561

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTG 656
            VG   A ++V F+ NP N   + A + E    I  H    S+ ++N      K++V TG
Sbjct: 562 GVGPKTADSVVAFFANPDNQETI-ARMMENGVVIENHTVVESAALDNATFFSEKRVVLTG 620

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           TL  + R +A++ + + GA V + +S+ TDI++ G+  GSKL KA+ LGV IM+E+ FL
Sbjct: 621 TLGTLTRSEAKQRLEEQGARVVSSVSKNTDILVAGEASGSKLVKARSLGVTIMDEQTFL 679


>gi|163751929|ref|ZP_02159142.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
 gi|161328212|gb|EDP99377.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
          Length = 690

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 260/719 (36%), Positives = 401/719 (55%), Gaps = 60/719 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73
           +E+  L  EI+ HD  Y+    PII DSEYD LK +   + + FP L    D N      
Sbjct: 10  QEIEHLISEINEHDHRYHVLDDPIITDSEYDRLKIKLKKLENRFPALNLILDLNAVSEGV 69

Query: 74  --------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                   P  ++GG+      ++TH  P LSL+ ++N E+   F  R+      +   +
Sbjct: 70  HTSIRFDSPSRRVGGKALSKFDQITHLKPMLSLDNVFNDEEFEAFHARL----TNRLGTT 125

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184
           + F  EPK+DG  ++I Y  G    AA RGDG  GED++  +R I +IP ++   N P +
Sbjct: 126 LRFCCEPKLDGLAVSILYRDGVLERAATRGDGEIGEDITENVRTIRSIPLKLRGDNFPPL 185

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGEV + K  F +LN+   A G K + NPRNAA+G LR+L+     +R L F+ + L
Sbjct: 186 LEVRGEVIMPKQAFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRSLGFYAYAL 245

Query: 244 G---KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G     +   A   Y  L +++  GFPV+  V+Q ++   +++YY ++ + RS L Y+ID
Sbjct: 246 GVVEPETWGLADHHYGQLLQLKSWGFPVSAEVKQCDSVSEVIAYYTDIMTRRSALAYEID 305

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVD  + Q +LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+P
Sbjct: 306 GVVIKVDNIAQQLKLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKP 365

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           + +GG  ++NATLHN D I  L            +++ D V+V+RAG+VIP++V I+  +
Sbjct: 366 IFVGGVTVSNATLHNADEIARL-----------GVKIKDTVIVRRAGDVIPQIVAIVAEK 414

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA    FP  CP+C S V R      G++VA  RCTGGL C AQ+ E +KHF SR A
Sbjct: 415 RPDDACEIEFPQTCPVCDSLVER----IEGEVVA--RCTGGLFCEAQRKEAIKHFASRKA 468

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+G+G + ++     E     +  PAD+F L      S + I  +   G  S TNL  
Sbjct: 469 LDIDGMGDKVVEQLIDKE----LVESPADLFKL------SASAITMLDRMGLKSATNLVA 518

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   +  +  RF+++LGIR VG   A +LA Y+ S       ++ + A N +++   I+
Sbjct: 519 AIEVAKKTTFPRFLYALGIREVGEATAANLANYFKS-------LDKLKAANAEEF---IK 568

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           V  VG I+AQ +  F+    N+  V++L++  V+  +       S  ++ +  V TGTL 
Sbjct: 569 VDDVGTIVAQHLTHFFAQSHNVEVVDSLIEAGVNWPVIEEVAEESLSLKGQTWVLTGTLT 628

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++ R+ A+  +  LGA V+A +S+ TD ++ G+  GSKL KAQ LG+KI++E+  L +L
Sbjct: 629 QLNRNDAKAQLQALGAKVAASVSKNTDCLVAGEAAGSKLTKAQDLGIKILDEDGLLAVL 687


>gi|74312947|ref|YP_311366.1| NAD-dependent DNA ligase LigA [Shigella sonnei Ss046]
 gi|123732314|sp|Q3YZD1|DNLJ_SHISS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|73856424|gb|AAZ89131.1| DNA ligase [Shigella sonnei Ss046]
 gi|323169148|gb|EFZ54825.1| DNA ligase, NAD-dependent [Shigella sonnei 53G]
          Length = 671

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/714 (35%), Positives = 409/714 (57%), Gaps = 54/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDII 608
             RF+++LGIR VG   A  LA Y+ + +   A  I             L +VP VG ++
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLEVLEAASIEE-----------LQKVPDVGIVV 556

Query: 609 AQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A  +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R 
Sbjct: 557 ASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRD 615

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 616 DAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|200388789|ref|ZP_03215401.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199605887|gb|EDZ04432.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 671

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAVKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|194444893|ref|YP_002041687.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|254781412|sp|B4SZU5|DNLJ_SALNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194403556|gb|ACF63778.1| DNA ligase [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 671

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/713 (35%), Positives = 406/713 (56%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++
Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKATT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ R  
Sbjct: 558 THVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669


>gi|168243193|ref|ZP_02668125.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449589|ref|YP_002046491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|254781411|sp|B4TCF6|DNLJ_SALHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194407893|gb|ACF68112.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205337689|gb|EDZ24453.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 671

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/716 (34%), Positives = 403/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +       +           L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATID----------ELQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|241764431|ref|ZP_04762455.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
 gi|241366173|gb|EER60750.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
          Length = 697

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 259/702 (36%), Positives = 382/702 (54%), Gaps = 58/702 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY   +P + D+EYD++ R   A+  A PDL     P+ P  ++ G +   L  V H +P
Sbjct: 30  YYVMDEPTVPDAEYDSVFRELQALETAHPDLI---TPDSPTQRVIGAVMDGLPPVRHVVP 86

Query: 95  TLSLEKIWNIE--DLRKFITRI-YRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
            LS+    + E    + F  R+ +       D  + +  EPK DG  +++RYE G+ V A
Sbjct: 87  MLSIHTETDTEATGAQAFDARVRHELGLAPSDPPVEYVAEPKFDGLAMSLRYENGRLVQA 146

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSL--------NIPEIIEVRGEVYISKNDFLALND 203
           A RGDG  GEDV+  IR I  IP VL          N+P ++EVRGEVY+ + DF ALN+
Sbjct: 147 ATRGDGEVGEDVTHNIRTIRQIPLVLPFDTPVSGGNNVPPLLEVRGEVYMRRADFDALNE 206

Query: 204 EMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG-----QYEM 257
                G K + NPRNAA+G +R+L+      R L+FF +GLG  + +   G      YE+
Sbjct: 207 RQREHGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLGAITPVGEGGPAFRTHYEV 266

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ ++  GFPV   V+       +V+Y+  + + R  LPYDIDG+VYKV+   LQ+ LG 
Sbjct: 267 LQTLKSWGFPVAAQVQITQGATELVAYHQRVGASRDALPYDIDGVVYKVNSLLLQRDLGF 326

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
           + R PRW ++HK+  ++ +T++  ID+Q+GRTG +TPVARL PV +GG  +TNATLHN  
Sbjct: 327 KTREPRWAVAHKYPAQEMATKIEGIDVQVGRTGKITPVARLAPVFVGGVTVTNATLHNLF 386

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            + +RVGD V+V+RAG+VIP+VV ++   R      F  P+ CP+C
Sbjct: 387 EIR-----------KKGVRVGDTVIVRRAGDVIPEVVGVMPGNRVGYVPNFRMPNACPVC 435

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S VVR+      K  A HRCTGGL C+AQ+ E + HF +R A +IEGLG + +D     
Sbjct: 436 GSDVVRE------KGEANHRCTGGLFCAAQRKEAILHFAARRAMDIEGLGDKLVDQLVD- 488

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  IR   D++   R   TS   +E +    + S  N+  ++ K +  +L RF+F+L
Sbjct: 489 ---ANVIRTLPDLY---RLGLTSLIALERM---AEKSAQNVLAALEKSKQTTLPRFLFAL 539

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG   A+ LA+++             +   ND          VG ++A+AI  F+ 
Sbjct: 540 GIRHVGEATAKDLARHFGVLDAIMDATEEQLLAVND----------VGPVVAKAIHTFFG 589

Query: 618 NPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            P N   VE L    V+   G   +     +    +V TGTL  + R  A++ +   GA 
Sbjct: 590 QPHNREVVEQLRACGVTWPEGAPAERAPQVLAGMTVVLTGTLPTLSRDAAKDLLEAAGAK 649

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V+  +S+KT  ++ G+  GSKL +AQ+LGV +++E   L LL
Sbjct: 650 VAGSVSKKTHYVVAGEEAGSKLARAQELGVPVLDEAGMLALL 691


>gi|184157078|ref|YP_001845417.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
 gi|254778156|sp|B2HUJ5|DNLJ_ACIBC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183208672|gb|ACC56070.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
          Length = 673

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 266/721 (36%), Positives = 397/721 (55%), Gaps = 59/721 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ R+    L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L +++ P  
Sbjct: 2   IEQMRQ----LIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPT- 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              K+GG+       VTH +P LSL  ++N EDL  F  R+    ++  +  + + +E K
Sbjct: 57  --TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVELK 111

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGE 190
           +DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVRGE
Sbjct: 112 LDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +    
Sbjct: 172 VLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPN 231

Query: 250 FA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KVD+
Sbjct: 232 HGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG  +
Sbjct: 292 LKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+  
Sbjct: 352 SNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVV 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGLG 
Sbjct: 401 HLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGD 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   + +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +  
Sbjct: 455 RWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASKKT 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIR VG   AR LA       N  Q +  + A N +   +L + P VGDI 
Sbjct: 507 TLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGDIT 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664
           A+ I +F+  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ R 
Sbjct: 557 AEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRD 611

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  T
Sbjct: 612 QATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQT 671

Query: 725 L 725
           L
Sbjct: 672 L 672


>gi|56412686|ref|YP_149761.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197361620|ref|YP_002141256.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81362021|sp|Q5PNE2|DNLJ_SALPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781414|sp|B5BB72|DNLJ_SALPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56126943|gb|AAV76449.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197093096|emb|CAR58535.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 671

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 406/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669


>gi|62180995|ref|YP_217412.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|75481868|sp|Q57LT1|DNLJ_SALCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|62128628|gb|AAX66331.1| DNA ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715476|gb|EFZ07047.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 671

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAEGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|168261543|ref|ZP_02683516.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205349337|gb|EDZ35968.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 671

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|145636448|ref|ZP_01792116.1| DNA ligase [Haemophilus influenzae PittHH]
 gi|145270273|gb|EDK10208.1| DNA ligase [Haemophilus influenzae PittHH]
          Length = 670

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/715 (36%), Positives = 414/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++S   F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 175 VFMSHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T+++ +   G  S  N  +S+   +
Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLDRM---GTKSAENALNSLENAK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIFSLGIR VG   A +LA ++ +            A  + +   L +VP VG+
Sbjct: 506 STTLARFIFSLGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665


>gi|260581847|ref|ZP_05849643.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
 gi|260095040|gb|EEW78932.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
          Length = 679

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 264/715 (36%), Positives = 413/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 14  QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 70

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 71  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 123

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 124 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 183

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 184 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 242

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 243 VDLPTTHYACLQWLKSIGIPVNPEIRLCNGADEVLDFYRDIQNKRSSLGYDIDGTVLKIN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 303 DIALQNELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVT 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 363 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 410

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 411 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 464

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+ K +
Sbjct: 465 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GVKSAENALNSLEKAK 514

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIF+LGIR VG   A +LA ++            + A    D   L +VP VG+
Sbjct: 515 STTLARFIFALGIREVGEATALNLANHF----------KTLDALKAADLDQLQQVPDVGE 564

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 565 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 619

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 620 MGRNEAKALLQQLGAKVSGSVSNKTDFVIAGDAAGSKLAKAQELNIAVLTEEEFL 674


>gi|237732406|ref|ZP_04562887.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
 gi|226907945|gb|EEH93863.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
          Length = 671

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/712 (35%), Positives = 406/712 (57%), Gaps = 50/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L      +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMCELRELEAQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K  + + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTDKLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G     + 
Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGVL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   +++YY++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKEWGLPVSDRVTLCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMV 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R      G+ V   RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCNSDVER----VEGEAVT--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+FTL      +  K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFTL------TAGKLTGLDRMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +  A E  +I          L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLE--ALEAASI--------EELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F+    N   +  LL +     +P +   E+ + S    K +V TG+L  + R  A
Sbjct: 559 HVFNFFAEESNREVIVQLLAQGIHWPAPVVINAEE-IDSPFAGKTVVLTGSLSLMSRDDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +T+LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 618 KARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 669


>gi|262280095|ref|ZP_06057880.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
 gi|262260446|gb|EEY79179.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
          Length = 692

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 266/721 (36%), Positives = 394/721 (54%), Gaps = 59/721 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ R+    L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +S+ P  
Sbjct: 20  IEQMRQ----LIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEQVQSDSPT- 74

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              K+GG+       VTH +P LSL  ++N EDL  F  R+    ++  +  + + +E K
Sbjct: 75  --TKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVELK 129

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGE 190
           +DG  I++ YE G  +    RGDG +GED++  ++ I  +P+VL      IP ++EVRGE
Sbjct: 130 LDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVRGE 189

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +    
Sbjct: 190 VLMPKSGFEKLNADQEAKGDKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCEPN 249

Query: 250 FAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KVD+
Sbjct: 250 HGLITMHDSLQWLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKVDD 309

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG  +
Sbjct: 310 LKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTV 369

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R PDA+  
Sbjct: 370 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRSPDAEIV 418

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGLG 
Sbjct: 419 HLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGD 472

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +  
Sbjct: 473 RWVESLLHLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASKKT 524

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIR VG   AR LA  + + +          A    D  +L + P VGDI 
Sbjct: 525 TLARFIYALGIRGVGETTARMLANTFQTLE----------ALKAADVEALKKTPDVGDIT 574

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664
           A+ I +F+  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ R 
Sbjct: 575 AEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRD 629

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  T
Sbjct: 630 QATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIIVMNETDFLSLMASYGQT 689

Query: 725 L 725
           L
Sbjct: 690 L 690


>gi|238759468|ref|ZP_04620632.1| DNA ligase [Yersinia aldovae ATCC 35236]
 gi|238702365|gb|EEP94918.1| DNA ligase [Yersinia aldovae ATCC 35236]
          Length = 670

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/711 (35%), Positives = 413/711 (58%), Gaps = 49/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  ++ P  
Sbjct: 1   MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELVTNDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ E    F  R++   + K    + F  E K
Sbjct: 60  --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKSVEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           +    F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 MPLAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +     L + +  G PV++ V+       ++++Y +++  R+ L +DIDG+V KVD+ 
Sbjct: 236 -PRSHIARLMQFKAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 DLQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D Q   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDTQEIV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPEHCPVCGS----DIERIEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   + +     +  PAD+FTL      +  K+  +   G  S  NL  ++ K +  +
Sbjct: 458 IIEQLVEKQ----YVENPADLFTL------TAGKLTGLDRMGPKSAQNLIVALEKAKQTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA +   ++N A    N+ A + D   +L  V  VG+++A
Sbjct: 508 FARFLYALGIREVGEATAANLAAH---FRNLA----NLRAADID---ALKSVQDVGEVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           + ++ F     N   +EAL + +S    +    + + S    K +V TG+L  + R +A+
Sbjct: 558 KHVMNFLNEEHNQKVIEALEQVISWPEPQQIVVEEIDSPFAGKTVVLTGSLTMLSRDEAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 618 DRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668


>gi|226953496|ref|ZP_03823960.1| DNA ligase [Acinetobacter sp. ATCC 27244]
 gi|226835781|gb|EEH68164.1| DNA ligase [Acinetobacter sp. ATCC 27244]
          Length = 675

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 267/719 (37%), Positives = 399/719 (55%), Gaps = 59/719 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ R+    L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +++ P  
Sbjct: 7   IEQMRQ----LIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTPT- 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             NK+GG+       VTH +P LSL  ++N E+L  F  RI    ++  +  + + +E K
Sbjct: 62  --NKVGGQALSKFESVTHVVPMLSLGNVFNQEELFAFARRID---ERLPNQKVQYEVELK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGE 190
           +DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VLS     IP+++EVRGE
Sbjct: 117 LDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSGQSQAIPQLLEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V + K  F  LN +  A G K +ANPRNAA+G LR+L+P    +R L F+ +G+ +    
Sbjct: 177 VLMPKQGFEKLNADQAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQPH 236

Query: 250 FA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 ++ L  +   GF +        +   +   Y +++  R  L  +IDG+V KVD+
Sbjct: 237 HGLATMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQQERPDLNVEIDGMVVKVDD 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+QLG  +R PRW  ++KF  + A T++ +ID Q+GRTG LTPVARL PV +GG  +
Sbjct: 297 LKQQQQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+  
Sbjct: 357 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWAEFRPTDAEIV 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGLG 
Sbjct: 406 HLPTNCPVCDSPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGD 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     ++  ADI+ L     T   K+  I   G+ SV NL D+I+  +  
Sbjct: 460 RWVESLLHLD----LLKDVADIYHL----HTHREKLLTIEKMGEKSVQNLIDAIDASKKT 511

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI+ LGIR VG   AR LA       N  Q ++ + A + +   SL + P VGDI 
Sbjct: 512 TLARFIYGLGIRGVGETTARMLA-------NTFQTLDALKAADVE---SLKKTPDVGDIT 561

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664
           A+ I +F+Q P NI  ++ L+     + G H    ++     +  +  V TGTL+ + R 
Sbjct: 562 AEWIADFFQAPHNIEVLDRLM-----AAGIHWDAPTAPTRQPLNGESWVVTGTLESMGRD 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +A + +  LGA VS  +S KT  ++ G+  GSKLEKAQ+L +++MNE++FL  L QY  
Sbjct: 617 EATQRLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAQKLEIRVMNEQEFLDFLAQYQA 675


>gi|295676829|ref|YP_003605353.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
 gi|295436672|gb|ADG15842.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
          Length = 687

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/728 (35%), Positives = 398/728 (54%), Gaps = 53/728 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R  +P  A S    R   + L  E+ + +  YY   +P + D+EYD L +  + I    P
Sbjct: 3   RSSVPSFATSAPAERA--AWLRAELEHANYAYYVLDQPDLPDAEYDKLFKELERIEAEHP 60

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           DL     P+ P  ++GGE       V H  P LSL   +  ED+  F  RI         
Sbjct: 61  DLIV---PDSPTQRVGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRIGDALGNNAS 117

Query: 124 NS---IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSL 179
                + +  E K DG  I++RY  G FV A+ RGDG +GE+V+  +R I +IP ++   
Sbjct: 118 EPPVPVDYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGK 177

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLN 237
            +P +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+ + IT  R L+
Sbjct: 178 RVPHVLDVRGEVLMFKRDFERLNERQRAAGQREFANPRNAAAGSLRQLD-SKITAQRPLS 236

Query: 238 FFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           FF +G+G    I       E+L   + +G PVN          G++ +++ +   R  LP
Sbjct: 237 FFAYGIGVLDGIEMPPTHSELLDWYKEMGLPVNGERAVVQGAKGLLGFFHAVGEKRDRLP 296

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           YDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVA
Sbjct: 297 YDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVA 356

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           RLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  
Sbjct: 357 RLEPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSA 405

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +++ R  DA+ F  P+ CP+C S + R  +       A  RCTGGL C AQ+ + L HF 
Sbjct: 406 LLDRRPTDAREFVMPTQCPVCGSAIERLPDE------AIARCTGGLFCPAQRKQALWHFA 459

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
            R A +I+GLG++ +D   +       +R PAD+F L          +  +  F D S  
Sbjct: 460 QRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFADKSAQ 509

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S           +   ND   
Sbjct: 510 NLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASLEALLEVND--- 566

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLV 653
                  VG ++A++I +F+    N   +E L    +   P      K     +  + +V
Sbjct: 567 -------VGPVVAESIHQFFAEDHNRTVIEQLRAPGRVTWPEGPPAPKAPQGVLAGQTVV 619

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL  + R  A+E +   GA V+  +S+KT  ++ G + GSKL KA++LG+ +++E+ 
Sbjct: 620 LTGTLPNLSREDAKEMLEAAGAKVAGSVSKKTSYVVAGADAGSKLAKAEELGIPVLDEDG 679

Query: 714 FLFLLQQY 721
              LL+ +
Sbjct: 680 MRKLLEGH 687


>gi|90410985|ref|ZP_01218999.1| DNA ligase [Photobacterium profundum 3TCK]
 gi|90328198|gb|EAS44509.1| DNA ligase [Photobacterium profundum 3TCK]
          Length = 697

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/708 (35%), Positives = 409/708 (57%), Gaps = 47/708 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +++L +L ++++YH   YY    P I D+EYD + ++  A+    P+L   + P+    +
Sbjct: 32  QQQLDTLREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEADHPELMSVDSPS---QR 88

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG    S  +V H +P LSL+  +N E+L  F  R+    +      + +  EPK+DG 
Sbjct: 89  VGGMPLDSFTQVKHELPMLSLDNAFNDEELHAFEKRLLD--RLITAGQVSYCCEPKLDGL 146

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ YE G  V AA RGDG +GE+++  +R I +IP ++     P  +EVRGEV++ K 
Sbjct: 147 AVSLMYENGVLVQAATRGDGATGENITTNVRTIRSIPLKLQGEGWPLRLEVRGEVFMPKK 206

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254
            F  LN   +  G K +ANPRNAA+G LR+L+     TR L+F+ + +G    +  A  Q
Sbjct: 207 GFDELNARALKKGDKAFANPRNAAAGSLRQLDSKIAATRPLSFYAYSVGVVEGMDLADSQ 266

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y+ L +++  G P+   +RQ  T   +++YY ++   R +L Y+IDG+V KVD+   Q+Q
Sbjct: 267 YDRLVQLKGWGIPMCPEIRQLKTIKDVIAYYQDIGERRQSLSYEIDGVVIKVDDVETQEQ 326

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEP+ +GG  ++NATLH
Sbjct: 327 LGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLH 386

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D         +V R G  + +GD V+++RAG+VIP++V ++ + R  +A    FP  C
Sbjct: 387 NAD---------EVARLG--VMIGDTVIIRRAGDVIPQIVSVVESRRPANALSIIFPETC 435

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A +++G G++ ++  
Sbjct: 436 PVCKSNVER----VEGEAVA--RCSGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQL 489

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     +  PA +F L     T   ++      G  S   L DS+   +  +L RFI
Sbjct: 490 VDRE----MVTTPAGLFKLSAGVVTVLDRM------GPKSAQKLVDSLANSKETTLPRFI 539

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +SLGIR VG   A +LA ++       + +  I A + +    L+ VP VG+++A  ++ 
Sbjct: 540 YSLGIREVGEATAANLANHF-------ETLEAITAASKE---QLLVVPDVGEVVANNLLN 589

Query: 615 FYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F++   N+  VE L+      P+I + E+ V   ++ K +V TG+L ++ R  A+  +  
Sbjct: 590 FFREAHNMDVVEDLIAVGIHWPAIEKPEEGVELPLDGKVVVLTGSLSQLTRSDAKAALQA 649

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           LGA V+  +S+KTD+++ G+  GSKL KAQ+L ++I +E+  + L+ +
Sbjct: 650 LGAKVTGSVSKKTDLLVAGEAAGSKLTKAQELDIEIWDEQALVDLMNR 697


>gi|322613832|gb|EFY10771.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617441|gb|EFY14340.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624929|gb|EFY21758.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629628|gb|EFY26404.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633942|gb|EFY30679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635621|gb|EFY32332.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639981|gb|EFY36651.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644326|gb|EFY40867.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322655311|gb|EFY51620.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658357|gb|EFY54623.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664357|gb|EFY60554.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668412|gb|EFY64568.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673252|gb|EFY69358.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676644|gb|EFY72712.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683394|gb|EFY79408.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685720|gb|EFY81713.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192602|gb|EFZ77831.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196835|gb|EFZ81978.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202141|gb|EFZ87199.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208024|gb|EFZ92969.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212850|gb|EFZ97659.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217119|gb|EGA01841.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219619|gb|EGA04102.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323229192|gb|EGA13316.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235493|gb|EGA19577.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237321|gb|EGA21384.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245552|gb|EGA29550.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248968|gb|EGA32891.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253065|gb|EGA36897.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255865|gb|EGA39610.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261411|gb|EGA44996.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266454|gb|EGA49942.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269716|gb|EGA53166.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 671

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 406/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H IP LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  +GA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|224583040|ref|YP_002636838.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254781413|sp|C0PZB4|DNLJ_SALPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|224467567|gb|ACN45397.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
          Length = 671

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|333016518|gb|EGK35849.1| DNA ligase, NAD-dependent [Shigella flexneri K-304]
          Length = 671

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARCTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G     N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKLAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|238756322|ref|ZP_04617636.1| DNA ligase [Yersinia ruckeri ATCC 29473]
 gi|238705475|gb|EEP97878.1| DNA ligase [Yersinia ruckeri ATCC 29473]
          Length = 674

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/716 (34%), Positives = 407/716 (56%), Gaps = 49/716 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L      +    P+L  ++ P  
Sbjct: 1   MESIIQQINQLRASLRHHEHQYHVLDAPEIPDAEYDRLMGELRELEAQHPELITADSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +   V H +P LSL+ +++ E    F  R++   + K    + F  E K
Sbjct: 60  --QRVGAAPLDAFEPVRHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG +GE+++A +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELIRAATRGDGTTGENITANVRTIHAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIF 250
           + +  F  LND+    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNDDARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E LQ+ +  G PV+  V++      ++++Y++++  R+ L +DIDG+V KVD   
Sbjct: 236 PSSHFERLQQFKAWGLPVSERVQRCTGVDQVIAFYHQVEQDRAHLGFDIDGVVIKVDALD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQMTQVREVEFQVGRTGAITPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP++V ++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVMVRRAGDVIPQIVGVVIDERPADAREIIF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S    D+    G+ VA  RC+GGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PEHCPVCGS----DIERIEGEAVA--RCSGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + E     +  PAD+F L      S   +  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKE----YVHNPADLFNL------SAGILTGLDRMGPKSAQNLVAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAAHLAAHFRTLENL----------RAADVEALKAVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            ++ F     N   ++ L + +S   P +      + S    K +V TG+L  + R +A+
Sbjct: 559 HVLNFLSEEHNQQVIQQLEQVISWPEPQL-IIATEIDSPFAGKTVVLTGSLTILSRDEAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +  +
Sbjct: 618 DRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIQVIDEAEMIRLLGESES 673


>gi|114563631|ref|YP_751144.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400]
 gi|122299383|sp|Q080K9|DNLJ_SHEFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114334924|gb|ABI72306.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400]
          Length = 670

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 403/712 (56%), Gaps = 53/712 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + E+  L   I+ H+  YY    P I D+EYD L +R   +   +P     +  + P  +
Sbjct: 5   QTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELEGDYPQF---KSVDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG       ++TH  P LSL+  +   D   F  RI      K DN + +  EPK+DG 
Sbjct: 62  VGGIALQKFAQITHLKPMLSLDNAFEQADFAAFNKRI----TDKVDN-VDYVCEPKLDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            ++I Y  G    AA RGDG  GED++A +R I +IP ++     P+++EVRGEV++ K 
Sbjct: 117 AVSITYRFGVLERAATRGDGSVGEDITANVRTIRSIPLKLRGEGFPDLVEVRGEVFMPKA 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT---SEIFAK 252
            F  LN   I+ G K + NPRNAA+G LR+L+     +R L F+ + LG     S+    
Sbjct: 177 AFEVLNQRQISKGDKVFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGESQPMQT 236

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             Y  L +++  G PV++ V+  ++   + +YY ++ + RS L Y+IDG+V KV++ + Q
Sbjct: 237 SHYGQLTQLQQWGVPVSSEVKVTDSLEKVYAYYADIMARRSALEYEIDGVVIKVNDIAKQ 296

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A++PRW I++KF  ++  T L  +D Q+GRTG +TPVARL+P+ +GG  ++NAT
Sbjct: 297 QTLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLKPIFVGGVTVSNAT 356

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I  L            +++GD V+++RAG+VIP++V I+  +R  DAQ   FP 
Sbjct: 357 LHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPDDAQDIIFPQ 405

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS V R      G+ VA  RC+GGL C AQ+ E +KHF SR A NI+G+G + ++
Sbjct: 406 HCPVCQSIVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALNIDGMGDKIVE 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     ++ PAD+F+L     +S T ++ +      S TN+  +I + +  +L R
Sbjct: 460 QLIDKE----LVKTPADLFSL---TASSVTMLDRM---AMKSATNIVAAIKQAKTTTLAR 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F++SLGIR VG   A +LA+++  ++                   L+ V  VGDI+A+ I
Sbjct: 510 FLYSLGIREVGEATAANLAQHFTEFERI----------RTASVEQLLEVADVGDIVAKHI 559

Query: 613 VEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            +F+  P NI  ++ LL+     P I + +++  S ++ +  V TGTL ++ R+ A+  +
Sbjct: 560 RQFFSQPHNIEVIDQLLEAGITWPVIEQADESQLS-LKGQTWVLTGTLTQLNRNDAKAQL 618

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S+ TD ++ G+  GSKL KA++LGVK+++E+  + LL   N
Sbjct: 619 QALGAKVAGSVSKNTDCLVAGEAAGSKLAKAEELGVKVIDEQALMDLLNAAN 670


>gi|91775756|ref|YP_545512.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
 gi|123254532|sp|Q1H1G6|DNLJ_METFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91709743|gb|ABE49671.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
          Length = 693

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/720 (36%), Positives = 391/720 (54%), Gaps = 63/720 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++ +L   I  +D  YY  + P + DSEYD + R   A+  A P+L     P+ P  ++
Sbjct: 19  EKVEALRATIRRYDYEYYVLNAPSVPDSEYDRVFRELKALEDAHPELV---TPDSPTQRV 75

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNI--EDLRKFITRI-YRFWQKKDDNSIFFTLEPKID 135
           GG     L  V H +P LS+E   +   +    F  R+  +     +D  I +  E K D
Sbjct: 76  GGAAMAELMPVRHHVPMLSIETETDTTPQGAYNFDARVRKKLGLLPEDGPIEYAAELKFD 135

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++RYE G  V AA RGDG  GEDV+  IR +  IP  L    PE++EVRGEVY+S+
Sbjct: 136 GLAMSLRYEHGLLVQAATRGDGEVGEDVTHNIRTMRQIPLQLHGEAPEVLEVRGEVYMSR 195

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG- 253
            DF   N      G+    NPRN A+G +R+L+P     R L+FF +GLG+T     KG 
Sbjct: 196 PDFERYNARQREHGKPTLVNPRNGAAGSIRQLDPRLAAQRPLSFFAYGLGET-----KGW 250

Query: 254 -----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  ++L  ++ LG PV N          + +++  + + R  LPYDIDG+VYKV+ 
Sbjct: 251 QVPLTHAQVLDALKALGLPVCNERAVGMGAEALAAFHQAISAKRDQLPYDIDGVVYKVNR 310

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++LG R+R P W ++HKF  ++  T L  ID+Q+GRTG +TPVARL+PV +GG  +
Sbjct: 311 LDLQRELGFRSREPNWAVAHKFPAQEEMTVLEHIDVQVGRTGAITPVARLKPVFVGGVTV 370

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHN+D I             +D+R+GD V+V+RAG+VIP+VV +I   R   +QP+
Sbjct: 371 TNATLHNQDEID-----------RKDVRIGDTVVVRRAGDVIPEVVSVIKERRPAGSQPY 419

Query: 429 ----SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
               +    CP+C S  VR   P+     AA RCTGGL C+AQ+ + + HF SR A +IE
Sbjct: 420 ILLDAIGGLCPVCGSHAVR--LPEE----AAVRCTGGLFCAAQRKQAILHFASRRAMDIE 473

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV---SVTNLYDS 541
           GLG++ +D           +   AD++            +E + G   +   S  NL D+
Sbjct: 474 GLGEKLVDQLVDQN----MVETLADLY------DPGKINLETLSGLDRMAMKSAQNLLDA 523

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + K +  +L RFI++LGIR+VG   A+ LA+++            + A    D  +L +V
Sbjct: 524 LQKSKQATLNRFIYALGIRNVGEATAKDLARHF----------GRLDALQAADVDTLQQV 573

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           P VG ++A++I EF+    N   +  L    +  S    +   SS++E K  V TGTL  
Sbjct: 574 PDVGPVVARSIAEFFAEEHNREVIRKLRDAGIHWSETDGQPASSSKLEGKTFVLTGTLPT 633

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R +A+E +   G  VS  +S+KT  ++ G + GSKL KAQ+LG+ I++EE  L LL +
Sbjct: 634 MSRDEAKEKIEAAGGKVSGSVSKKTSYVVAGSDAGSKLAKAQELGLAILDEEGLLSLLAE 693


>gi|333001543|gb|EGK21111.1| DNA ligase, NAD-dependent [Shigella flexneri VA-6]
 gi|333002206|gb|EGK21770.1| DNA ligase, NAD-dependent [Shigella flexneri K-272]
 gi|333016032|gb|EGK35364.1| DNA ligase, NAD-dependent [Shigella flexneri K-227]
          Length = 671

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G     N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKLAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|332678645|gb|AEE87774.1| DNA ligase [Francisella cf. novicida Fx1]
          Length = 678

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 268/728 (36%), Positives = 407/728 (55%), Gaps = 65/728 (8%)

Query: 6   LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + P E  SI+    A+ EL +    L   +S     Y+   KPII DS+YD L R    +
Sbjct: 1   MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +  P     +  N  L+++GGE+      + H     SL  ++++E+LR F  +I    
Sbjct: 61  VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYGKI---- 113

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
               +  I    EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L+
Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169

Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
             N PE +EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L
Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229

Query: 237 NFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
             + +G+G  S+ F   + Q+E++  ++  GF +++ +  A  F  +  Y+++M   R+ 
Sbjct: 230 KLYSYGIGYFSKDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDGLV+KV+   LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TP
Sbjct: 290 LAYDIDGLVFKVNNIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG +++NATLHN + IK            +DIRV DRV+V+RAG+VIP+VV
Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVSDRVIVRRAGDVIPEVV 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R PDAQ    P+ CP+C S  + ++N +     A +RCTGG  C AQ  ERLKH
Sbjct: 399 KSLPQYRKPDAQVVEMPTSCPVCDS-AIENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I+ LG + ++        A  I+ PADI+ L   Q T   ++      G  S
Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFDQLTGLERM------GAKS 502

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N+ DSI K +  SL RFIF++GI+ +G   +  LA ++ S ++F           +  
Sbjct: 503 SQNVLDSIKKSKTPSLARFIFAIGIKDIGEVSSDVLANHFGSLESF----------RDAK 552

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650
           +  LI +  +G+I+A  IV F+ +  NI  VE LL    K  +P    H  N S     K
Sbjct: 553 FEELIEINDIGEIMANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNES--FTGK 610

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+ +   R +  + +  +GA V++ +S+KTD++I G+N GSKL KAQ LGV+++ 
Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGENAGSKLTKAQDLGVEVIF 670

Query: 711 EEQFLFLL 718
           EE    LL
Sbjct: 671 EEDLQNLL 678


>gi|145630192|ref|ZP_01785974.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|144984473|gb|EDJ91896.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
          Length = 670

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 261/715 (36%), Positives = 414/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 234 VDLPTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+   +
Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIF+LGIR VG   A +LA ++ +               + +   L +VP VG+
Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLDTL----------KDANLEELQQVPDVGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+++     G H + V    +SE   ++K +V TGTL +
Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIEQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665


>gi|152997408|ref|YP_001342243.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1]
 gi|190359264|sp|A6W0S9|DNLJ_MARMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150838332|gb|ABR72308.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1]
          Length = 672

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/711 (35%), Positives = 400/711 (56%), Gaps = 49/711 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L Q+++ +   Y+   +PI+ D+ YD   R+  +I    P+  +++ P     ++
Sbjct: 4   QQMLDLIQQLNDYSYAYHVKDEPIVPDAVYDRDYRQLQSIEAEHPEWIQADSPT---QRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G + +     V H++P LSL+  ++ E L  F  RI +    +    + +  EPK+DG  
Sbjct: 61  GEKPDSGFTNVAHTVPMLSLDNAFDNESLADFDQRIRKLLNAE---QVTYCCEPKLDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           I++RYE+G+ V    RGDG SGED+++ I+ I ++P ++ +   P ++EVRGE+Y+ K  
Sbjct: 118 ISLRYEEGRLVRGVTRGDGLSGEDITSNIKTIYSVPLKLRTKTPPAVLEVRGEIYMPKEG 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF-AKGQY 255
           F  LN   +  G K + NPRNAA+G LR+L+P     R L    + +G        +  Y
Sbjct: 178 FEKLNALAVEQGEKTFVNPRNAAAGSLRQLDPKVTAKRPLVMCAYSIGYVEGWEQPESHY 237

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L ++   GF  N+ +  A    G + YY ++   R++L YDIDG+VYKVD+ +LQ QL
Sbjct: 238 AGLLQLSEWGFRTNDLMITAEGAQGCIDYYEKLNEKRASLSYDIDGIVYKVDQIALQNQL 297

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW I+ KF  ++  TR+L +D Q+GRTG +TPVARLEPV +GG  ++NATLHN
Sbjct: 298 GFIARAPRWAIARKFPAQEEMTRILGVDFQVGRTGAITPVARLEPVFVGGVTVSNATLHN 357

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           +D I  L            ++V D V+V RAG+VIPKVV +++++R  +A    FP  CP
Sbjct: 358 KDEIARL-----------GVKVNDFVIVHRAGDVIPKVVQVVIDKRPENATEVVFPEACP 406

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S    DL    G+ V   RCTGGL C AQ  E LKHFVSR A +I+GLG + ++   
Sbjct: 407 VCGS----DLEQVEGEAVI--RCTGGLVCGAQLKESLKHFVSRKAMDIDGLGDKLIEQLV 460

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             +     ++ P DIFTL  ++ T    + ++   G  SV  L  SI   ++    RFI+
Sbjct: 461 DQQ----LVKTPVDIFTLSEKKDT----LLSMERMGQKSVEKLLASIEIAKSTQFNRFIY 512

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGIR VG   AR+L  Y+        E+++++A + +   +L+ V  VG I+AQ +  F
Sbjct: 513 SLGIREVGEATARALTSYF-------TELDDLMAADQE---TLVEVEDVGPIVAQHVRLF 562

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +    N   ++ LL   +  +   ++ VS++   +  K  V TG+L +  R + ++ +  
Sbjct: 563 FDQELNRDTIKGLL--AAGVVWEKKQQVSADELPLSGKTYVVTGSLSQFSRDQVKDKLQA 620

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           LGA VS  +S KTD ++ G+  GSKL KAQ L V I++E   + LL ++  
Sbjct: 621 LGAKVSGSVSAKTDCLVAGEKAGSKLTKAQSLNVPIIDEAGVIALLTEHGA 671


>gi|262394922|ref|YP_003286776.1| DNA ligase [Vibrio sp. Ex25]
 gi|262338516|gb|ACY52311.1| DNA ligase [Vibrio sp. Ex25]
          Length = 690

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 258/712 (36%), Positives = 404/712 (56%), Gaps = 53/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL   + P+  
Sbjct: 23  ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPS-- 80

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI-FFTLEPK 133
             ++GG+   +  +VTH +P LSL+  ++  +L  F  R     ++    S+  +  EPK
Sbjct: 81  -QRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---ERVGSQSVKEYCCEPK 136

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  N  P  +EVRGEV+
Sbjct: 137 LDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVF 196

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G  + +E+
Sbjct: 197 MPKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGAEL 256

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A   YE   +++  G P+    ++  +   + +YY ++   R  LPY+IDG+V K+D+ 
Sbjct: 257 -AASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDDI 315

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++
Sbjct: 316 AVQERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVS 375

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +++GD V+++RAG+VIP+VV +I   R   A+   
Sbjct: 376 NATLHNADEIERL-----------QVKIGDHVVIRRAGDVIPQVVSVIKERRPETARDII 424

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ V   RCTGGL C AQ+ + LKHFVSR A +++GLG +
Sbjct: 425 FPTQCPVCGSHVER----IEGEAVT--RCTGGLVCQAQRKQALKHFVSRKALDVDGLGDK 478

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG-FGDVSVTNLYDSINKRRNI 548
            ++     E     ++ PAD+F L       +  I  +L   G  S  N+ +++ K +  
Sbjct: 479 VIEQLVDRE----MVKTPADLFKL-------SAGILTVLDRMGPKSAQNIVNALEKSKET 527

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA ++ + +          A  N +   LI V  +G ++
Sbjct: 528 TLPRFLYSLGIREVGEATAANLAMHFKTLE----------AIQNANEEQLIEVQDIGAVV 577

Query: 609 AQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           AQ I  F+   +N   V+ LL++    P I   E+     +E K +V TGTL ++ R +A
Sbjct: 578 AQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTEA 637

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+
Sbjct: 638 KEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELM 689


>gi|331663971|ref|ZP_08364881.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
 gi|331059770|gb|EGI31747.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
          Length = 671

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|253996456|ref|YP_003048520.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8]
 gi|253983135|gb|ACT47993.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8]
          Length = 677

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 259/718 (36%), Positives = 396/718 (55%), Gaps = 57/718 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L +  A   +  L   I+ +D  YY    P + DSEYD + R    +  A+P L  ++ P
Sbjct: 4   LKLSSAELRVLELRGLIARYDYEYYVLDAPSVPDSEYDKIYRELQTLEQAYPSLVVADSP 63

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++ G    +   +TH    LSL   +   +L  F  RI           + + +E
Sbjct: 64  T---QRVSGTATNAFGSITHRQAMLSLNNAFEQSELEAFDKRIREALGVA---QVEYAVE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK DG  IT+ YE G F+  A RGDG++GEDV+  +R +  IP  L+  N P+++EVRGE
Sbjct: 118 PKFDGLAITLTYEHGVFIQGATRGDGYTGEDVTHNLRTLRAIPMRLNCENPPQLLEVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
           V + K DF  LN   +A G K +ANPRNAA+G LR+L+     TR L FF +GLG    +
Sbjct: 178 VLMLKRDFDKLNQAQLAKGEKLFANPRNAAAGSLRQLDAKVTATRPLTFFAYGLGVAEGV 237

Query: 250 FAKGQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            A   +   +  +  L FPV++         G+  YY ++   R  LP+DIDG+VYKV++
Sbjct: 238 PALTSHGAAMDYLASLHFPVSSARAVVRGVQGLSDYYEKIGQQRQQLPFDIDGVVYKVNQ 297

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+ Q +LG  +R+PRW ++HKF  ++A T + DI +Q+GRTG +TPVARL+PV +GG  +
Sbjct: 298 FNQQNELGFVSRAPRWAVAHKFPAQEALTLVEDITVQVGRTGAITPVARLKPVFVGGVTV 357

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHNED I+            +DI +GD V V+RAG+VIP+VV ++V +R   A+ F
Sbjct: 358 TNATLHNEDEIR-----------RKDILIGDTVSVRRAGDVIPEVVSVVVEKRPAHARRF 406

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S +++  +       A  RCTGGL C AQ+ + + H+ SR A +IEGLG+
Sbjct: 407 EMPTVCPECGSHILKQADE------AVARCTGGLFCPAQRKQAITHYASRRAMDIEGLGE 460

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D   +    A  +   AD+++L          + N+    + S  N+ D++N  ++ 
Sbjct: 461 KLVDQLVE----ANLVHTLADVYSL------DIHTLSNLERMAEKSAQNILDALNASKDT 510

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LG+R+VG   A+ LAK++         +N ++A + +D   L+ V  VG I+
Sbjct: 511 TLARFIYALGMRNVGEATAKDLAKHF-------GNLNALMAASIED---LLEVNDVGPIV 560

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRH------EKNVSSEIENKKLVFTGTLQKIQ 662
           A++I  F+    N   + ALL     + G H      ++  +  +  K  V TGTL  + 
Sbjct: 561 AESIKNFFSEEHNKSVIAALL-----NAGIHWVETEGKQQATGNLVGKTFVLTGTLPNLA 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R  A+  +   G  VS  +S+KTD ++ G + GSKLEKAQ LGV I++E   L +L +
Sbjct: 616 RDDAKALIEAAGGKVSGSVSKKTDFVVAGADAGSKLEKAQLLGVAIIDEANLLAVLAE 673


>gi|254781232|sp|B0VU02|DNLJ_ACIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 678

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/723 (36%), Positives = 397/723 (54%), Gaps = 55/723 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +++ P
Sbjct: 1   MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+GG+       VTH +P LSL  ++N EDL  F  R+    ++  +  + + +E
Sbjct: 61  T---TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234

Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA       N  Q +  + A N +   +L + P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662
           I A+ I +F+  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ 
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 614

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y 
Sbjct: 615 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 674

Query: 723 TTL 725
            TL
Sbjct: 675 QTL 677


>gi|296046585|gb|ADG86434.1| NAD-dependent DNA ligase [Francisella novicida]
          Length = 670

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 399/712 (56%), Gaps = 53/712 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + E+  L   I+ H+  YY    P I D+EYD L +R   +   +P     +  + P  +
Sbjct: 5   QTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELERDYPQF---KSVDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG       ++TH  P LSL+  +   D   F  RI         +S+ +  EPK+DG 
Sbjct: 62  VGGIALQKFAQITHLKPMLSLDNAFEQADFAAFNKRI-----TDKVDSVDYVCEPKLDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            ++I Y  G    AA RGDG  GED++A +R I +IP ++     P+++EVRGEV++ K 
Sbjct: 117 AVSITYRFGVLERAATRGDGSVGEDITANVRTIRSIPLKLRGEGFPDLVEVRGEVFMPKA 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT---SEIFAK 252
            F ALN   I+ G K + NPRNAA+G LR+L+     +R L F+ + LG     S+    
Sbjct: 177 AFEALNQRQISKGDKVFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGESQPMQT 236

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             Y  L +++  G PV++ V+  +    + +YY ++ + RS L Y+IDG+V KV++ + Q
Sbjct: 237 SHYGQLTQLQQWGIPVSSEVKVTDLLEKVYAYYADIMARRSALEYEIDGVVIKVNDIAKQ 296

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A++PRW I++KF  ++  T L  +D Q+GRTG +TPVARL+P+ +GG  ++NAT
Sbjct: 297 QTLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLKPIFVGGVTVSNAT 356

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I  L            +++GD V+++RAG+VIP++V I+  +R  DAQ   FP 
Sbjct: 357 LHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPDDAQDIIFPL 405

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS V R      G+ VA  RC+GGL C AQ+ E +KHF SR A NI+G+G + ++
Sbjct: 406 HCPVCQSIVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALNIDGMGDKIVE 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     ++ PAD+F+L      + + I  +      S TN+  +I   +  +L R
Sbjct: 460 QLIDKE----LVKTPADLFSL------TASSITMLDRMAMKSATNIVAAIKHAKATTLAR 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F++SLGIR VG   A +LA+++  ++                   L+ V  VGDI+A+ I
Sbjct: 510 FLYSLGIREVGEATAANLAQHFAEFERI----------RTASVEQLLEVADVGDIVAKHI 559

Query: 613 VEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            +F+  P NI  +E LL+     P I + +++  S ++ +  V TGTL ++ R+ A+  +
Sbjct: 560 RQFFAQPHNIEVIEQLLEAGITWPVIEQADESQLS-LKGQTWVLTGTLTQLNRNDAKAQL 618

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S+ TD ++ G+  GSKL KA++LGVK+++E+  + LL   N
Sbjct: 619 QALGAKVAGSVSKNTDCLVAGEAAGSKLAKAEELGVKVIDEQALMDLLNAAN 670


>gi|126640855|ref|YP_001083839.1| DNA ligase [Acinetobacter baumannii ATCC 17978]
 gi|322506977|gb|ADX02431.1| DNA ligase [Acinetobacter baumannii 1656-2]
 gi|323516844|gb|ADX91225.1| DNA ligase, NAD-dependent [Acinetobacter baumannii TCDC-AB0715]
          Length = 669

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/714 (36%), Positives = 393/714 (55%), Gaps = 55/714 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L +++ P     K+GG
Sbjct: 1   MRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPT---TKVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +       VTH +P LSL  ++N EDL  F  R+    ++  +  + + +E K+DG  I+
Sbjct: 58  QALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVELKLDGLAIS 114

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISKND 197
           + YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVRGEV + K+ 
Sbjct: 115 LWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSG 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA-KGQY 255
           F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +          +
Sbjct: 175 FEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMH 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KVD+   Q+QL
Sbjct: 235 DSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG  ++N TLHN
Sbjct: 295 GFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              I  L           D+R+GD V V R G+VIPKV  +    R  +A+    P  CP
Sbjct: 355 IGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCP 403

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++   
Sbjct: 404 VCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLL 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +  +L RFI+
Sbjct: 458 RLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASKKTTLARFIY 509

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   AR LA       N  Q +  + A N +   +L + P VGDI A+ I +F
Sbjct: 510 ALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGDITAEWIADF 559

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRHKAQEYVT 671
           +  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ R +A + + 
Sbjct: 560 FLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQ 614

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 615 ALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTL 668


>gi|169634132|ref|YP_001707868.1| DNA ligase [Acinetobacter baumannii SDF]
 gi|169152924|emb|CAP01965.1| DNA ligase [Acinetobacter baumannii]
          Length = 691

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/723 (36%), Positives = 397/723 (54%), Gaps = 55/723 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +++ P
Sbjct: 14  MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSP 73

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+GG+       VTH +P LSL  ++N EDL  F  R+    ++  +  + + +E
Sbjct: 74  T---TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247

Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T    +  I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA       N  Q +  + A N +   +L + P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662
           I A+ I +F+  P NI  ++ L+     + G H    ++     +  +  V TGTL+++ 
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 627

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y 
Sbjct: 628 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 687

Query: 723 TTL 725
            TL
Sbjct: 688 QTL 690


>gi|218705919|ref|YP_002413438.1| NAD-dependent DNA ligase LigA [Escherichia coli UMN026]
 gi|293405854|ref|ZP_06649846.1| DNA ligase [Escherichia coli FVEC1412]
 gi|298381604|ref|ZP_06991203.1| DNA ligase [Escherichia coli FVEC1302]
 gi|254781326|sp|B7N602|DNLJ_ECOLU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218433016|emb|CAR13911.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026]
 gi|284922366|emb|CBG35453.1| DNA ligase [Escherichia coli 042]
 gi|291428062|gb|EFF01089.1| DNA ligase [Escherichia coli FVEC1412]
 gi|298279046|gb|EFI20560.1| DNA ligase [Escherichia coli FVEC1302]
          Length = 671

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|198243638|ref|YP_002216496.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|254781408|sp|B5FQB9|DNLJ_SALDC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197938154|gb|ACH75487.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326624250|gb|EGE30595.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 671

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/716 (34%), Positives = 402/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +   LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLVLQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +       +           L +VP VG 
Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATID----------ELQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|51597030|ref|YP_071221.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
           32953]
 gi|186896113|ref|YP_001873225.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis PB1/+]
 gi|81638946|sp|Q668M6|DNLJ_YERPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781913|sp|B2K917|DNLJ_YERPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51590312|emb|CAH21949.1| DNA ligase [Yersinia pseudotuberculosis IP 32953]
 gi|186699139|gb|ACC89768.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis PB1/+]
          Length = 670

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/710 (34%), Positives = 406/710 (57%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD + ++   +    P+L  ++ P  
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ E    F  R++   + K    + F  E K
Sbjct: 60  --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP R+   N+P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+  
Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLV 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D +  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSQCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F      Q +  K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLF------QLTAGKLTGLDRMGPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNL----------RAADIETLKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +E L K VS    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +T LGA VS  +S+KT ++I G+  GSKL KAQ+LG+K+++E + + LL
Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLL 668


>gi|238792031|ref|ZP_04635667.1| DNA ligase [Yersinia intermedia ATCC 29909]
 gi|238728662|gb|EEQ20180.1| DNA ligase [Yersinia intermedia ATCC 29909]
          Length = 670

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/710 (34%), Positives = 409/710 (57%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++  ++    P+L   + P  
Sbjct: 1   MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRSLEAQHPELITHDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ +    F  R++   + K    + F  E K
Sbjct: 60  --QRVGAAPLDAFEQVRHEVPMLSLDNVFDEDSYLAFDKRVHD--RLKSAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP R+   NIP+ +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPQRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLMFFCYGVGLLDGGDL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+N V+       ++++Y +++  R++L +DIDG+V KVD   
Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVKLCTGSDEVIAFYRQVEQDRTSLGFDIDGVVIKVDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFQAQEQITQVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            IR+GD V+++RAG+VIP+VV +++ +R  D +   F
Sbjct: 356 ATLHNADEIERL-----------GIRIGDTVIIRRAGDVIPQVVGVVMEQRPQDTKEIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PQHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L      +  K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFEL------TAGKLTGLDRMGPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +       ++N+ A + D   +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFCN-------LDNLRAADID---ALKSVPDVGEVVAR 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F     N   + AL K +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVRNFLSEEHNQKVIAALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 668


>gi|153948204|ref|YP_001400300.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
           31758]
 gi|170023674|ref|YP_001720179.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis YPIII]
 gi|190359300|sp|A7FGC2|DNLJ_YERP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781915|sp|B1JFZ0|DNLJ_YERPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152959699|gb|ABS47160.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758]
 gi|169750208|gb|ACA67726.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis YPIII]
          Length = 670

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/710 (34%), Positives = 406/710 (57%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD + ++   +    P+L  ++ P  
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ E    F  R++   + K    + F  E K
Sbjct: 60  --QRVGAAPLDAFEQVEHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP R+   N+P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+  
Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLV 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D +  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSQCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F      Q +  K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLF------QLTAGKLTGLDRMGPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNL----------RAADIETLKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +E L K VS    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +T LGA VS  +S+KT ++I G+  GSKL KAQ+LG+K+++E + + LL
Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLL 668


>gi|82701780|ref|YP_411346.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
 gi|123754406|sp|Q2YBB7|DNLJ_NITMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|82409845|gb|ABB73954.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
          Length = 707

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 261/729 (35%), Positives = 391/729 (53%), Gaps = 66/729 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  + +  L   I  H+  YY+   P I D+++D L R  + +    P+L     P+ 
Sbjct: 5   LSEISRHMRELRDAIELHNIRYYELDTPTIPDADFDKLFRELEELEQRHPELI---TPDS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H  P LSL   +   ++  F  R+    Q      + + +EPK
Sbjct: 62  PTQRVGIPPLKAFPQVVHRTPMLSLSNAFTEGEVEAFDRRV---RQSLGIAQVEYAVEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----SLNIPEIIEVR 188
            DG  I++ YE G  V  A RGDG+ GEDV+  ++ I +IP  L     S  +P  +EVR
Sbjct: 119 FDGLAISLCYENGMLVSGATRGDGYIGEDVTLNLKTIRSIPLGLRAGDGSAEVPAFLEVR 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--K 245
           GEV + K DF  LN +      K + NPRNAA+G LR+L+P     R L FF +G+G  +
Sbjct: 179 GEVLMLKADFERLNRQQREKNEKTFINPRNAAAGSLRQLDPCITANRNLRFFAYGIGVCE 238

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              +       +L  +  L FPV    R      G++ Y++E+  +R  L YDIDG VYK
Sbjct: 239 GGNVPHDTHSHLLDYLSSLRFPVMRERRTVTGVAGLLEYHHEINGLREQLSYDIDGTVYK 298

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+E   Q++LG  +R+PR+ ++HKF  ++A+T LL ID+Q+GRTG LTPVARL+PV +GG
Sbjct: 299 VNELEYQEKLGFVSRAPRFALAHKFPAQEATTELLGIDVQVGRTGALTPVARLKPVFVGG 358

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           A +TNATLHNED I+            +D+ +GDRV V+RAG+VIP+VV +    R  +A
Sbjct: 359 ATVTNATLHNEDEIR-----------RKDVMIGDRVTVRRAGDVIPEVVAVQKESRPSNA 407

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF  P  CP+C SR +R      G+ +   RCTGGL C AQ+ + + HF SR A NI G
Sbjct: 408 KPFVMPEHCPVCGSRTIR----LPGETLT--RCTGGLFCPAQRKQAILHFASRRAMNIHG 461

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + +D      D A  IR PAD++ L      +  ++      G+ S  N+ + I K 
Sbjct: 462 LGDKLVDHLV---DNAI-IRTPADLYKLGLAALAALDRM------GEKSAGNIINEIEKS 511

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +L RFI+SLGIR+VG   AR LA+Y+                 + D  +L +V  VG
Sbjct: 512 KDTTLARFIYSLGIRNVGEATARDLARYFGGLDRLM----------DADVETLQQVSDVG 561

Query: 606 DIIAQAIVEFYQNPRNICAVEAL---------------LKEVSPSIGRHEKNVSSEIENK 650
            ++AQ+I +F+    N   VE L                   + S        SS+I  +
Sbjct: 562 PVVAQSIADFFGERHNREVVEQLRAAGIRWKEGAGTQTTDHAAGSAHPGAAAASSKIAGR 621

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGTL  + R +A+E +  +G  V+  +S+KTD ++ G + GSK +KA +LGV +++
Sbjct: 622 SFVLTGTLPTMSREEAREKIEAMGGKVAGSVSKKTDYVVAGADAGSKYDKALELGVALLD 681

Query: 711 EEQFLFLLQ 719
           E + + LLQ
Sbjct: 682 EAELIRLLQ 690


>gi|24113756|ref|NP_708266.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 301]
 gi|30063805|ref|NP_837976.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 2457T]
 gi|110806352|ref|YP_689872.1| NAD-dependent DNA ligase LigA [Shigella flexneri 5 str. 8401]
 gi|81723177|sp|Q83K81|DNLJ_SHIFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|122366427|sp|Q0T298|DNLJ_SHIF8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24052834|gb|AAN43973.1| DNA ligase [Shigella flexneri 2a str. 301]
 gi|30042060|gb|AAP17786.1| DNA ligase [Shigella flexneri 2a str. 2457T]
 gi|110615900|gb|ABF04567.1| DNA ligase [Shigella flexneri 5 str. 8401]
 gi|281601828|gb|ADA74812.1| DNA ligase, NAD-dependent [Shigella flexneri 2002017]
 gi|313650866|gb|EFS15266.1| DNA ligase, NAD-dependent [Shigella flexneri 2a str. 2457T]
 gi|332755453|gb|EGJ85817.1| DNA ligase, NAD-dependent [Shigella flexneri K-671]
 gi|332756263|gb|EGJ86614.1| DNA ligase, NAD-dependent [Shigella flexneri 2747-71]
 gi|333002064|gb|EGK21630.1| DNA ligase, NAD-dependent [Shigella flexneri K-218]
          Length = 671

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G     N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKLAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|134296034|ref|YP_001119769.1| DNA ligase [Burkholderia vietnamiensis G4]
 gi|166215568|sp|A4JF81|DNLJ_BURVG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|134139191|gb|ABO54934.1| DNA ligase, NAD-dependent [Burkholderia vietnamiensis G4]
          Length = 691

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/708 (36%), Positives = 395/708 (55%), Gaps = 52/708 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  YY   +P + D+EYD L      +    P+L     P+ P  ++GG + 
Sbjct: 20  LRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLEADHPELVT---PDSPTQRVGGAVA 76

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137
                V H  P LSL   ++ +D+  F  R+     K  D      + + +  E K DG 
Sbjct: 77  SGFTPVVHDAPMLSLNNGFSDDDIVAFDKRVADALDKPTDLAGSVTDPVEYACELKFDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++RYE+G FV A+ RGDG +GEDV+  +R I +IP ++   ++P +++VRGEV + K 
Sbjct: 137 AISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEVLMFKR 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254
           DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G    +      
Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFSYGIGVLDGMPMPDTH 256

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L     LG PVN          G++ ++ ++   R +LPYDIDG+VYKV+    Q +
Sbjct: 257 SALLDWYEALGLPVNRERAVVRGAQGLLEFFRKVGERRESLPYDIDGVVYKVNRRDEQDR 316

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH
Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 376

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +DIR+GD V+V+RAG+VIP+VV  ++  R  DA  F  P+ C
Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLERRPVDAAEFVMPTEC 425

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D  
Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RFI
Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIRHVG   A+ LAK++ S       ++ I+  + ++   L+ V  VG I+A++I +
Sbjct: 530 YGLGIRHVGESTAKDLAKHFGS-------LDPIMDASIEE---LLEVNDVGPIVAESIHQ 579

Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           F+    N   ++ L    K   P      K     +  K +V TGTL  + R  A+E + 
Sbjct: 580 FFAEEHNRTVIDQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAAKEMLE 639

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 640 AAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|220931078|ref|YP_002507986.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168]
 gi|254781343|sp|B8D122|DNLJ_HALOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219992388|gb|ACL68991.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168]
          Length = 670

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 261/709 (36%), Positives = 393/709 (55%), Gaps = 53/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +E+  L ++I YH+  YY    P I D+E+D L +R   +    P L     P+ P 
Sbjct: 4   KVEQEIRDLREKIRYHEYRYYVLDDPEISDAEFDELIQRLIDLEEKHPGLVT---PDSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE      KV H +P LSL   +N  DL  F  RIYR     D   I F +E KID
Sbjct: 61  QRVGGEPLDKFDKVEHRVPMLSLGNAFNEGDLTNFARRIYRLL---DTGKIDFVVEHKID 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G    + Y+ G+ +  A RG+G  GEDV+A I+ IP++P  L  ++   IEVRGEVYI K
Sbjct: 118 GLSAILTYQGGRLIRGATRGNGVVGEDVTANIKTIPSVPLRLKKDVD--IEVRGEVYIKK 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
           +DF  LN+  +  G +P+ANPRNAA+G +R+L+P     R L+F  + +        +  
Sbjct: 176 DDFSKLNERRLKKGEEPFANPRNAAAGSIRQLDPRLAAARPLSFIAYDVVAYEGEGLQTH 235

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
              L+ +R LGF VN   R+ +    +V+   +    R  LP++IDG+V KV+E  L++Q
Sbjct: 236 VGALELLRELGFKVN-WYRKCDDITEVVNICKDWVDKREELPFEIDGMVIKVNELGLREQ 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  +Q +T + DI I +GRTG LTP A LEPV + G+ ++ ATLH
Sbjct: 295 LGATAKSPRWAIAYKFPAQQKTTVVKDIIISVGRTGALTPTAVLEPVEVDGSTVSRATLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I+            +D+R+GD VLV++AG+VIP+VV +I ++R    Q F  P  C
Sbjct: 355 NEDEIR-----------RKDVRIGDHVLVQKAGDVIPEVVKVIKSKRDGSEQIFHMPETC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C   VVR+         A  RC     C AQ+ E + HFVSR+A NI+G+G   +D  
Sbjct: 404 PACGGEVVREEGE------AVLRCVNVTGCPAQRREGILHFVSRNAMNIDGVGPALIDQL 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       I   AD++ L++       ++      G+ S TN  ++I   ++  L R I
Sbjct: 458 LEK----GLIEDYADLYYLKKEDLIPLERM------GEKSATNAIEAIRASKDRPLFRVI 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIRHVG  +AR L + Y S  +  +               L+ +  +G  IA++I+E
Sbjct: 508 FALGIRHVGLGVARVLTEKYRSLSDLMRASGE----------ELVAIDEIGPTIARSIIE 557

Query: 615 FYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F++ P N   +    EA ++      G+ E+N+   +  K  VFTG L    R +A++ V
Sbjct: 558 FFKEPHNREVINKLKEAGVRLEEKENGKEEQNLY--LSGKTFVFTGKLDGFTRSEARDKV 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  V++ +SRKTD ++VGD+PGSK +KA++LGV I++E++F  +L+
Sbjct: 616 IAAGGKVTSSVSRKTDYVVVGDSPGSKYDKARELGVTILDEDKFKEVLK 664


>gi|320014458|gb|ADV98029.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 670

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/712 (35%), Positives = 410/712 (57%), Gaps = 51/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD + ++   +    P+L  ++ P  
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ E    F  R++   + K    + F  E K
Sbjct: 60  --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP R+   N+P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G     E+
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +   + L + +  G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+ 
Sbjct: 236 -PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 ALQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D +  +
Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEIT 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FPS CP+C S    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPSQCPVCSS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   + +     +  PAD+F      Q +  K+  +   G  S  NL  ++ K +  +
Sbjct: 458 IIEQLVEKQ----YVENPADLF------QLTAGKLTGLDRMGPKSAQNLIAALEKAKQTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A
Sbjct: 508 FARFLYALGIREVGEATAANLAAHFRTLDNL----------RAADIETLKSVPDVGEVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           + ++ F     N   +E L K VS   P     E++  S    K +V TG+L  + R +A
Sbjct: 558 KHVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEES-DSPFAGKTVVLTGSLTILSRDEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++ +T LGA VS  +S+KT ++I G+  GSKL KAQ+LG+K+++E + + LL
Sbjct: 617 KDRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLL 668


>gi|22125389|ref|NP_668812.1| NAD-dependent DNA ligase LigA [Yersinia pestis KIM 10]
 gi|45442391|ref|NP_993930.1| NAD-dependent DNA ligase LigA [Yersinia pestis biovar Microtus str.
           91001]
 gi|108808172|ref|YP_652088.1| NAD-dependent DNA ligase LigA [Yersinia pestis Antiqua]
 gi|108811556|ref|YP_647323.1| NAD-dependent DNA ligase LigA [Yersinia pestis Nepal516]
 gi|145599373|ref|YP_001163449.1| NAD-dependent DNA ligase LigA [Yersinia pestis Pestoides F]
 gi|149365146|ref|ZP_01887181.1| DNA ligase [Yersinia pestis CA88-4125]
 gi|162420672|ref|YP_001607138.1| NAD-dependent DNA ligase LigA [Yersinia pestis Angola]
 gi|165926903|ref|ZP_02222735.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165940356|ref|ZP_02228875.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011271|ref|ZP_02232169.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212520|ref|ZP_02238555.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398917|ref|ZP_02304441.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421338|ref|ZP_02313091.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424444|ref|ZP_02316197.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470665|ref|ZP_02335369.1| DNA ligase, NAD-dependent [Yersinia pestis FV-1]
 gi|218930038|ref|YP_002347913.1| NAD-dependent DNA ligase LigA [Yersinia pestis CO92]
 gi|229838581|ref|ZP_04458740.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229895648|ref|ZP_04510819.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
 gi|229899147|ref|ZP_04514290.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901826|ref|ZP_04516947.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
 gi|270490015|ref|ZP_06207089.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
 gi|122980211|sp|Q1CJV7|DNLJ_YERPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123372308|sp|Q1C5X9|DNLJ_YERPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123776939|sp|Q7CJF3|DNLJ_YERPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216255|sp|A4TMG4|DNLJ_YERPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781914|sp|A9QZH0|DNLJ_YERPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21958274|gb|AAM85063.1|AE013752_4 DNA ligase [Yersinia pestis KIM 10]
 gi|45437255|gb|AAS62807.1| DNA ligase [Yersinia pestis biovar Microtus str. 91001]
 gi|108775204|gb|ABG17723.1| DNA ligase [Yersinia pestis Nepal516]
 gi|108780085|gb|ABG14143.1| DNA ligase [Yersinia pestis Antiqua]
 gi|115348649|emb|CAL21593.1| DNA ligase [Yersinia pestis CO92]
 gi|145211069|gb|ABP40476.1| DNA ligase [Yersinia pestis Pestoides F]
 gi|149291559|gb|EDM41633.1| DNA ligase [Yersinia pestis CA88-4125]
 gi|162353487|gb|ABX87435.1| DNA ligase, NAD-dependent [Yersinia pestis Angola]
 gi|165911711|gb|EDR30369.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921254|gb|EDR38478.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989949|gb|EDR42250.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206451|gb|EDR50931.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960827|gb|EDR56848.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051421|gb|EDR62829.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056326|gb|EDR66095.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229680722|gb|EEO76817.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
 gi|229687549|gb|EEO79622.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229694947|gb|EEO84994.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701454|gb|EEO89482.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
 gi|270338519|gb|EFA49296.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
          Length = 670

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/711 (35%), Positives = 408/711 (57%), Gaps = 49/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD + ++   +    P+L  ++ P  
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ E    F  R++   + K    + F  E K
Sbjct: 60  --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP R+   N+P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+ +
Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D +  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S    D+    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSQCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F      Q +  K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLF------QLTAGKLTGLDRMGPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNL----------RAADIETLKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            ++ F     N   +E L K VS   P     E++  S    K +V TG+L  + R +A+
Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEES-DSPFAGKTVVLTGSLTILSRDEAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +T LGA VS  +S+KT ++I G+  GSKL KAQ+LG+K+++E + + LL
Sbjct: 618 DRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLL 668


>gi|148360390|ref|YP_001251597.1| DNA ligase [Legionella pneumophila str. Corby]
 gi|166215817|sp|A5IFV1|DNLJ_LEGPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148282163|gb|ABQ56251.1| DNA ligase [Legionella pneumophila str. Corby]
          Length = 673

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/707 (36%), Positives = 389/707 (55%), Gaps = 54/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P+ P  +
Sbjct: 7   KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEPKID 135
           + G  + +   V H    LSL  ++  ++L+ FI R     +K D+    + F  EPK+D
Sbjct: 64  VSGTPSDAFMPVAHKQAMLSLSNVFTTDELKAFIKRAI---EKLDEPNQQLVFACEPKLD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G   +AA RGDG  GE+++A I+ I ++P R+   N P++IEVRGEVYI 
Sbjct: 121 GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252
           K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G   +     
Sbjct: 181 KADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D  SLQ
Sbjct: 241 SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  ++NAT
Sbjct: 301 QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I             +DI +GD V+++RAG+VIP+VV +I+ +R  +A+    P 
Sbjct: 361 LHNFDEIT-----------RKDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKIELPK 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG   +D
Sbjct: 410 NCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLID 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                 D      + AD++ L  +       + N+   G+ S  NL  ++ K +  +  R
Sbjct: 464 QLV---DEGIVHHL-ADLYELDLQ------TLANLPRMGEKSAKNLLSALEKSKKTTFNR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           F+++LGIR +G   AR LA++Y   ++  A  I  ++  N+           +G + A  
Sbjct: 514 FLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLND-----------IGPVAASH 562

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQE 668
           IV F+    N+  ++ LL E+     + EK   N  +    K +V TGTL  + R +A+ 
Sbjct: 563 IVHFFAQAHNLEVIDRLL-ELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKA 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL
Sbjct: 622 KLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVAIIEEDEFL 668


>gi|16765747|ref|NP_461362.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167991721|ref|ZP_02572820.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|197262860|ref|ZP_03162934.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|81522316|sp|Q8ZN89|DNLJ_SALTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|16420966|gb|AAL21321.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|197241115|gb|EDY23735.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205329843|gb|EDZ16607.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247627|emb|CBG25454.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267994529|gb|ACY89414.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158979|emb|CBW18492.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312913414|dbj|BAJ37388.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222873|gb|EFX47944.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323130756|gb|ADX18186.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332989355|gb|AEF08338.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 671

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/716 (34%), Positives = 405/716 (56%), Gaps = 58/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    I  
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231

Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            G+        L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+ LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 292 NSLALQELLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKSK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 505 TTTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L ++ 
Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|319776649|ref|YP_004139137.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
 gi|329124164|ref|ZP_08252711.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
 gi|317451240|emb|CBY87473.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
 gi|327467589|gb|EGF13087.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
          Length = 670

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/715 (36%), Positives = 413/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGTITPVAKLEPVFVAGVT 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+   +
Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+
Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665


>gi|33602779|ref|NP_890339.1| DNA ligase [Bordetella bronchiseptica RB50]
 gi|81429836|sp|Q7WCJ7|DNLJ_BORBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33577221|emb|CAE35778.1| DNA ligase [Bordetella bronchiseptica RB50]
          Length = 696

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 264/729 (36%), Positives = 398/729 (54%), Gaps = 71/729 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L  EI  H+  YY +  P + D+EYDAL R   A+    P+L     P+ P  +
Sbjct: 9   QQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPDSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEPK 133
           +G         V H++P LSL   ++ ED+R F  R+    +       D  + +  E K
Sbjct: 66  VGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I++RYE+G+   AA RGDG +GEDV+A IR I  +P  L    P ++EVRGEV +
Sbjct: 126 LDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLH-GAPRVLEVRGEVLM 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF------VHGLGK- 245
           ++ +F  LN    A G K + NPRNAA+G LR+L+P     R L FF      VHGL + 
Sbjct: 185 NRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEG 244

Query: 246 --------------TSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKS 290
                          S +       ML  +  LG PVN     +     G++++Y  +  
Sbjct: 245 MPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGK 304

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
           +R+ LPYDIDG+VYKVD    Q+ LG  AR+PR+ ++HKF  ++A T+LL I++Q+GRTG
Sbjct: 305 LRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTG 364

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVARL PV +GG  +TNATLHNED I+            +D+R+GD V+V+RAG+VI
Sbjct: 365 AITPVARLAPVFVGGVTVTNATLHNEDEIR-----------RKDVRIGDTVIVRRAGDVI 413

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+VV  ++ +R  DA+ F   + CPIC S + R      G+ +A  RCTGGL C+AQ+ +
Sbjct: 414 PEVVGPVLEKRPADAREFVMLTACPICGSAIER----PEGEAIA--RCTGGLFCAAQRKQ 467

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            L H   R A +IEGLG++ +D    ++     ++  ADI++L      +  ++  +   
Sbjct: 468 TLLHAAGRKALDIEGLGEKLIDQLVDAD----RVKSLADIYSL------TAFELAALERM 517

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           G  S  NL  +I++ R  +L R +F+LGIRHVG   AR +A+++ S +            
Sbjct: 518 GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASEE---- 573

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIEN 649
                 +L+ VP VG ++A +I  F+  P N   VE L ++ V P      +  S  +  
Sbjct: 574 ------ALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS--LAG 625

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K  V TGT+    R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LGV ++
Sbjct: 626 KTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVL 685

Query: 710 NEEQFLFLL 718
           +E+    LL
Sbjct: 686 DEDGLKALL 694


>gi|30995424|ref|NP_439257.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae Rd KW20]
 gi|145638086|ref|ZP_01793696.1| DNA ligase [Haemophilus influenzae PittII]
 gi|166214918|sp|P43813|DNLJ_HAEIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145272415|gb|EDK12322.1| DNA ligase [Haemophilus influenzae PittII]
 gi|309751252|gb|ADO81236.1| NAD-dependent DNA ligase [Haemophilus influenzae R2866]
          Length = 670

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/715 (36%), Positives = 413/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+   +
Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+
Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665


>gi|209364099|ref|YP_001424866.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
 gi|207082032|gb|ABS76887.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
          Length = 673

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 261/711 (36%), Positives = 413/711 (58%), Gaps = 58/711 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L QEI+ H+  YY  S+P I DS YD L      +   +P+   +  P+ P  +
Sbjct: 11  QKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSSPTQR 67

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G E  L +F+ V H IP LSL+ +++ + LR F  RI +  + K D    +  EPK+DG
Sbjct: 68  VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 124

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV + +
Sbjct: 125 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 184

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252
             F   N E    G K +ANPRNAASG LR+L+P     R L F+ +  GL K  + F K
Sbjct: 185 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 243

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   +Q
Sbjct: 244 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 303

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG++TPVARLEPV++ G  ++NAT
Sbjct: 304 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGVVTPVARLEPVSVSGVTVSNAT 363

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D         ++ R  +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    PS
Sbjct: 364 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 412

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C + V++      G+ VA  RC GGL C AQ  E +KHF SR A +IEGLG + ++
Sbjct: 413 RCPVCHAEVIKP----EGEAVA--RCVGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 466

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F +        ++  DI  + + ++++ T +  +   G+ S  NL  +I K +  +L R
Sbjct: 467 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 516

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG  IAR+LA+++        E++ ++  + +   +L  +  +G ++A+ I
Sbjct: 517 FLYALGIRGVGDTIARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVVAENI 566

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668
             F+    N   +  L+      +G H   EK  V SEI  K  V TG L+ + R +A+E
Sbjct: 567 HAFFHQKHNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 622 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672


>gi|163802586|ref|ZP_02196478.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
 gi|159173669|gb|EDP58488.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
          Length = 670

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/710 (35%), Positives = 395/710 (55%), Gaps = 47/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   ++L  L++ + YH   YY    P I D+EYD + R    I    PDL   + P+  
Sbjct: 3   ESVLQQLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPDLVTVDSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+      +VTH +P LSL+  ++  +L  F  R     +    N   +  EPK+
Sbjct: 61  -QRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQD--RVVAHNIKQYCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I  IP ++   N P  +EVRGEV++
Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGENWPTRLEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFA 251
            K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G     + A
Sbjct: 178 PKAGFDKLNELARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGAVLA 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE   +++  G P+    R  +    + +YY ++   R  L Y+IDG+V KVD+  +
Sbjct: 238 NSHYERFLQIKSWGLPMCPETRCVDNLEEVKAYYRDILVRREALAYEIDGVVIKVDDIVI 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEP+ +GG  ++NA
Sbjct: 298 QERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + VGD+V+++RAG+VIP+VV +I   R   A+   FP
Sbjct: 358 TLHNADEIERL-----------QVMVGDQVVIRRAGDVIPQVVSVIKERRPETAREIIFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 NACPVCGSHVER----IEGE--AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S TN+ +++ K +  +L 
Sbjct: 461 EQLVDRE----MVETPADLFKLSAGVLTVLDRM------GPKSATNVVNALEKSKLTTLP 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+Y+           N+ A        L+ V  +G ++A+ 
Sbjct: 511 RFLYSLGIREVGEATAANLAQYF----------KNLDAIQQATEEQLVDVQDIGVVVAKH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   V+ LL +    P I   ++     +E K +V TGTL ++ R +A+E 
Sbjct: 561 ITTFFSEEKNQAVVQDLLAQGINWPDIASPQEGAERPLEGKTVVLTGTLSQLGRSEAKEA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L++
Sbjct: 621 LQNLGAKVTGSVSKKTDILFAGENAGSKLTKAQELGIEIQTEQDLLNLMK 670


>gi|82544871|ref|YP_408818.1| NAD-dependent DNA ligase LigA [Shigella boydii Sb227]
 gi|123741957|sp|Q31Y68|DNLJ_SHIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81246282|gb|ABB66990.1| DNA ligase [Shigella boydii Sb227]
          Length = 671

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G     N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKLAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|296046593|gb|ADG86438.1| NAD-dependent DNA ligase [synthetic construct]
          Length = 689

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/715 (35%), Positives = 404/715 (56%), Gaps = 71/715 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY   +P + D+EYD L      +    P+L   + P+    K+GG+   S  +VTH +P
Sbjct: 22  YYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTIDSPS---QKVGGQALKSFTQVTHQLP 78

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ +++++D   F+ R+    +  D+ +I F  EPK+DG  +++RYE G+ + AA R
Sbjct: 79  MLSLDNVFSLDDFHAFVKRVKD--RLNDNQAIVFCAEPKLDGLAVSLRYEHGQLIQAATR 136

Query: 155 GDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
           GDG  GE+++  IR I +IP  L      + P+I+EVRGEV++ K  F ALN      G 
Sbjct: 137 GDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTLAKKRGE 196

Query: 211 KPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--------------KTSEIFAKGQ 254
           K +ANPRNAA+G LR+L+ + IT  R L F+ + LG               T++ FA   
Sbjct: 197 KGFANPRNAAAGSLRQLD-SKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANSH 255

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L +++ LG P+   VR   +     ++Y ++ + RS L Y+IDG V KVDE SLQK+
Sbjct: 256 HERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQKR 315

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NATLH
Sbjct: 316 LGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATLH 375

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D I  L            ++V D V+++RAG+VIP++V +++++R  +A    FP+ C
Sbjct: 376 NQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTSC 424

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V +          A  RCT GL C+AQ+ E +KHF SR A +++GLG + ++  
Sbjct: 425 PVCDSAVAKPEGE------AVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQL 478

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     I  PAD+F L   Q ++  ++      G  S TNL + + + ++ +L +FI
Sbjct: 479 VDEK----LINTPADLFKLTEIQVSTIDRM------GKKSATNLINGLEQAKSTTLAKFI 528

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIR VG   A +LA ++ +          + A  +     L  V  VG+++A+ I+ 
Sbjct: 529 YGLGIREVGEATAANLANHFYT----------LAAIESASLEDLQNVSDVGEVVAKNIIN 578

Query: 615 FYQNPRNICAVEALLKEVS-PSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F++   N+  V  L + +  P+I      E  ++ +I     V TGTL ++ R +A+  +
Sbjct: 579 FFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQI----FVLTGTLTQMGRTEAKTAL 634

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             LGA VS  +S+ T  ++ GD  GSKL KAQ LG+ ++ E+  + LL ++  T+
Sbjct: 635 QSLGAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689


>gi|145298235|ref|YP_001141076.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166215387|sp|A4SKA6|DNLJ_AERS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|142851007|gb|ABO89328.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 664

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 256/691 (37%), Positives = 400/691 (57%), Gaps = 55/691 (7%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R   AI    P+L  S  P+    ++GG+   +  +V H IP
Sbjct: 22  YYVLDNPTVPDAEYDRLMRELIAIESEHPELKTSASPS---VRVGGQPLTAFRQVRHEIP 78

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ +++ E+L+ F  R+    + K + S  F  EPK+DG  +++ Y  G+ V AA R
Sbjct: 79  MLSLDNVFSSEELQAFEQRMKD--RLKREISFTFCCEPKLDGLAVSLLYVDGQLVQAATR 136

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211
           GDG +GE+++  +R I  IP  LSL   + P  +EVRGEV++ K  F A+N + +A G K
Sbjct: 137 GDGATGEEITENVRTIKAIP--LSLRGSDWPARLEVRGEVFMPKAGFEAMNAKALAAGEK 194

Query: 212 PYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
            + NPRNAA+G LR+L+     +R LNF+ +G+G   +      +  L +++  G P++ 
Sbjct: 195 VFVNPRNAAAGSLRQLDSRITASRPLNFYAYGVGVGGDQLGDSHFGRLCQLKAWGLPMSP 254

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
            V+      G  ++++++ + R  L Y+IDG+VYKVD   LQ++LG  AR+PRW  +HKF
Sbjct: 255 EVKLKEGAAGCQAFHDDILARRGELAYEIDGVVYKVDAIPLQEELGFVARAPRWATAHKF 314

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
             ++  T L +++ Q+GRTG +TPVA+L+PV +GG  I+NATLHN D I+ L        
Sbjct: 315 PAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTISNATLHNADEIERL-------- 366

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
               + +GD V+V+RAG+VIP++V ++  +R  DA+   FP+ CP+C S + R      G
Sbjct: 367 ---GVMIGDTVIVRRAGDVIPQIVAVVEAQRPVDAREILFPTQCPVCGSALER----LEG 419

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
           ++V   RC+GGL C AQ+ E +KHF +R A +++GLG + ++      D    ++ PAD+
Sbjct: 420 EVVT--RCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLV---DKGL-VKTPADL 473

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           F+L   Q     ++      G  S  NL  +I+  R+ +L RF+F+LGIR VG   A +L
Sbjct: 474 FSLNAIQLAGLERM------GQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNL 527

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A ++L+       ++ + A + +    L+ V  VGDI+A+ +  F + P NI  + A + 
Sbjct: 528 ANHFLT-------LDALRAASVE---QLLEVADVGDIVAKHVYYFLRQPHNIEVLAAGIH 577

Query: 631 EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
              P+I   EK  +SE     K  V TGTL  + R+ A+  +  LGA V+  +S KTD++
Sbjct: 578 --WPAI---EKKEASEQPFAGKTFVLTGTLNLLSRNDAKAALQALGAKVAGSVSAKTDVL 632

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + G+  GSKL KAQ+LG+ I  EEQ    LQ
Sbjct: 633 VAGEAAGSKLAKAQELGITIWTEEQLQAALQ 663


>gi|148828262|ref|YP_001293015.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
 gi|166215779|sp|A5UIM6|DNLJ_HAEIG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148719504|gb|ABR00632.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
          Length = 670

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/715 (36%), Positives = 413/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIRHEIPMLSLDNAFSDTEFNAFVKRI-------EDRLILLPKPLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G    AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYVNGVLTQAATRGDGSTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 234 VDLPTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+   +
Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+
Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665


>gi|33594429|ref|NP_882073.1| DNA ligase [Bordetella pertussis Tohama I]
 gi|81424006|sp|Q7VRX7|DNLJ_BORPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33564504|emb|CAE43819.1| DNA ligase [Bordetella pertussis Tohama I]
 gi|332383840|gb|AEE68687.1| DNA ligase [Bordetella pertussis CS]
          Length = 696

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/729 (36%), Positives = 398/729 (54%), Gaps = 71/729 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L  EI  H+  YY +  P + D+EYDAL R   A+    P+L     P+ P  +
Sbjct: 9   QQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPDSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEPK 133
           +G         V H++P LSL   ++ ED+R F  R+    +       D  + +  E K
Sbjct: 66  VGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I++RYE+G+   AA RGDG +GEDV+A IR I  +P  L    P ++EVRGEV +
Sbjct: 126 LDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLH-GAPRVLEVRGEVLM 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF------VHGLGK- 245
           ++ +F  LN    A G K + NPRNAA+G LR+L+P     R L FF      VHGL + 
Sbjct: 185 NRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEG 244

Query: 246 --------------TSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKS 290
                          S +       ML  +  LG PVN     +     G++++Y  +  
Sbjct: 245 MPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGK 304

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
           +R+ LPYDIDG+VYKVD    Q+ LG  AR+PR+ ++HKF  ++A T+LL I++Q+GRTG
Sbjct: 305 LRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTG 364

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVARL PV +GG  +TNATLHNED I+            +D+R+GD V+V+RAG+VI
Sbjct: 365 AITPVARLAPVFVGGVTVTNATLHNEDEIR-----------RKDVRIGDTVIVRRAGDVI 413

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+VV  ++ +R  DA+ F   + CPIC S + R   P++  +    RCTGGL C+AQ+ +
Sbjct: 414 PEVVGPVLEKRPADAREFVMLTACPICGSAIER---PESEAIA---RCTGGLFCAAQRKQ 467

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            L H   R A +IEGLG++ +D    ++     ++  ADI++L      +  ++  +   
Sbjct: 468 TLLHAAGRKALDIEGLGEKLIDQLVDAD----RVKSLADIYSL------TAFELAALERM 517

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           G  S  NL  +I++ R  +L R +F+LGIRHVG   AR +A+++ S +            
Sbjct: 518 GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASEE---- 573

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIEN 649
                 +L+ VP VG ++A +I  F+  P N   VE L ++ V P      +  S  +  
Sbjct: 574 ------ALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS--LAG 625

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K  V TGT+    R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LGV ++
Sbjct: 626 KTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVL 685

Query: 710 NEEQFLFLL 718
           +E+    LL
Sbjct: 686 DEDGLKALL 694


>gi|71281008|ref|YP_270140.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H]
 gi|123774873|sp|Q47YI0|DNLJ_COLP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71146748|gb|AAZ27221.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H]
          Length = 689

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/715 (35%), Positives = 407/715 (56%), Gaps = 71/715 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY   +P + D+EYD L      +    P+L   + P+    K+GG+   S  +VTH +P
Sbjct: 22  YYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTIDSPS---QKVGGQALKSFTQVTHQLP 78

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ +++++D   F+ R+    +  D+ +I F  EPK+DG  +++RYE G+ + AA R
Sbjct: 79  MLSLDNVFSLDDFHAFVKRVKD--RLNDNQAIVFCAEPKLDGLAVSLRYEHGQLIQAATR 136

Query: 155 GDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
           GDG  GE+++  IR I +IP  L      + P+I+EVRGEV++ K  F ALN      G 
Sbjct: 137 GDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTLAKKRGE 196

Query: 211 KPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--------------KTSEIFAKGQ 254
           K +ANPRNAA+G LR+L+ + IT  R L F+ + LG               T++ FA   
Sbjct: 197 KGFANPRNAAAGSLRQLD-SKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANSH 255

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L +++ LG P+   VR   +     ++Y ++ + RS L Y+IDG V KVDE SLQK+
Sbjct: 256 HERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQKR 315

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NATLH
Sbjct: 316 LGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATLH 375

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D I  L            ++V D V+++RAG+VIP++V +++++R  +A    FP+ C
Sbjct: 376 NQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTSC 424

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V +   P+   ++   RCT GL C+AQ+ E +KHF SR A +++GLG + ++  
Sbjct: 425 PVCDSAVAK---PEGEAVL---RCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQL 478

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     I  PAD+F L   Q ++  ++      G  S TNL + + + ++ +L +FI
Sbjct: 479 VDEK----LINTPADLFKLTEIQVSTIDRM------GKKSATNLINGLEQAKSTTLAKFI 528

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIR VG   A +LA ++ +          + A  +     L  V  VG+++A+ I+ 
Sbjct: 529 YGLGIREVGEATAANLANHFYT----------LAAIESASLEDLQNVSDVGEVVAKNIIN 578

Query: 615 FYQNPRNICAVEALLKEVS-PSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F++   N+  V  L + +  P+I      E  ++ +I     V TGTL ++ R +A+  +
Sbjct: 579 FFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQI----FVLTGTLTQMGRTEAKTAL 634

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             LGA VS  +S+ T  ++ GD  GSKL KAQ LG+ ++ E+  + LL ++  T+
Sbjct: 635 QSLGAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689


>gi|7673996|sp|O87703|DNLJ_BACST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3688229|emb|CAA09732.1| DNA ligase [Geobacillus stearothermophilus]
          Length = 670

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 258/708 (36%), Positives = 396/708 (55%), Gaps = 56/708 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA +  + L + ++ +   YY   +P + D+EYD L +   AI   +P+L  S+ P   
Sbjct: 4   QQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPT-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +IGG    +  KV H +P +SL   +   DLR F  R+     +++     +  E KI
Sbjct: 62  -QRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRV-----RQEVGEAAYVCELKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L L  P  +E RGE ++ 
Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLKEPVSLEARGEAFMP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL     +    
Sbjct: 174 KASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGIAS 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  ++ LGF VN   R+      ++++ +E    R  LPY+IDG+V KVD F+ Q+
Sbjct: 234 HSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQR 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  ATL
Sbjct: 294 ALGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF+ P+ 
Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAMPTH 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +VR      G++  A RC     C AQ  ERL HF SR A NIEGLG++ +  
Sbjct: 403 CPECESELVR----LEGEV--ALRCLNP-NCPAQLRERLIHFASRAAMNIEGLGEKVVTQ 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F     A  +R  AD++ L + Q     ++      G+ S  NL  +I   +  SLER 
Sbjct: 456 LFN----AGLVRDVADLYCLTKEQLVGLERM------GEKSAANLLAAIEASKQNSLERL 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR+VGA+ A+ LA+++ + +   +               L+ VP +G+ +A AI 
Sbjct: 506 LFGLGIRYVGAKAAQLLAEHFETMERLERATKE----------ELMAVPEIGEKMADAIT 555

Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            F+  P     ++ L      +    P     E    S    K +V TG L  + R++A+
Sbjct: 556 AFFAQPEATELLQELRAYGVNMAYKGPKRS-AEAPADSAFAGKTVVLTGKLASMSRNEAK 614

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           E + +LG  V+  +SR TD++I G++ GSKLEKAQQLG++I +E +FL
Sbjct: 615 EQIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDESRFL 662


>gi|301169841|emb|CBW29445.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae 10810]
          Length = 670

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 261/715 (36%), Positives = 412/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTQLDNLRKTLRQYEYEYHVLDHPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVNRI-------EDRLILLPKPLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+   +
Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIF+LGIR VG   A +LA ++ +               + +   L +VP VG+
Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLDTL----------KDANLEELQQVPDVGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665


>gi|296106543|ref|YP_003618243.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
 gi|295648444|gb|ADG24291.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
          Length = 673

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/707 (36%), Positives = 389/707 (55%), Gaps = 54/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P+ P  +
Sbjct: 7   KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEPKID 135
           + G  + +   V H    LSL  ++  ++L+ FI R     +K D+    + F  EPK+D
Sbjct: 64  VSGTPSDAFMPVAHKQAMLSLSNVFTTDELKAFIKRAI---EKLDEPNQQLVFACEPKLD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G   +AA RGDG  GE+++A I+ I ++P R+   N P++IEVRGEVYI 
Sbjct: 121 GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252
           K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G   +     
Sbjct: 181 KADFEAYNARARELGEKIFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D  SLQ
Sbjct: 241 SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  ++NAT
Sbjct: 301 QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I             +DI +GD V+++RAG+VIP+VV +I+ +R  +A+    P 
Sbjct: 361 LHNFDEIT-----------RKDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKIELPK 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG   +D
Sbjct: 410 NCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLID 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                 D      + AD++ L  +       + N+   G+ S  NL  ++ K +  +  R
Sbjct: 464 QLV---DEGIVHHL-ADLYELDLQ------TLANLPRMGEKSAKNLLSALEKSKKTTFNR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           F+++LGIR +G   AR LA++Y   ++  A  I  ++  N+           +G + A  
Sbjct: 514 FLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLND-----------IGPVAASH 562

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQE 668
           IV F+    N+  ++ LL E+     + EK   N  +    K +V TGTL  + R +A+ 
Sbjct: 563 IVHFFAQAHNLEVIDRLL-ELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKA 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL
Sbjct: 622 KLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVAIIEEDEFL 668


>gi|190359248|sp|A9KCS0|DNLJ_COXBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 670

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 261/711 (36%), Positives = 413/711 (58%), Gaps = 58/711 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L QEI+ H+  YY  S+P I DS YD L      +   +P+   +  P+ P  +
Sbjct: 8   QKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSSPTQR 64

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G E  L +F+ V H IP LSL+ +++ + LR F  RI +  + K D    +  EPK+DG
Sbjct: 65  VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 121

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV + +
Sbjct: 122 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252
             F   N E    G K +ANPRNAASG LR+L+P     R L F+ +  GL K  + F K
Sbjct: 182 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   +Q
Sbjct: 241 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG++TPVARLEPV++ G  ++NAT
Sbjct: 301 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGVVTPVARLEPVSVSGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D         ++ R  +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    PS
Sbjct: 361 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C + V++      G+ VA  RC GGL C AQ  E +KHF SR A +IEGLG + ++
Sbjct: 410 RCPVCHAEVIKP----EGEAVA--RCVGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F +        ++  DI  + + ++++ T +  +   G+ S  NL  +I K +  +L R
Sbjct: 464 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG  IAR+LA+++        E++ ++  + +   +L  +  +G ++A+ I
Sbjct: 514 FLYALGIRGVGDTIARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVVAENI 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668
             F+    N   +  L+      +G H   EK  V SEI  K  V TG L+ + R +A+E
Sbjct: 564 HAFFHQKHNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 619 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669


>gi|260580185|ref|ZP_05848015.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
 gi|1574651|gb|AAC22753.1| DNA ligase (lig) [Haemophilus influenzae Rd KW20]
 gi|260093469|gb|EEW77402.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
          Length = 679

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/715 (36%), Positives = 413/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 14  QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 70

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 71  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 123

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 124 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 183

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 184 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 242

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 243 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 303 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 363 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 410

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 411 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 464

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+   +
Sbjct: 465 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 514

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+
Sbjct: 515 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 564

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 565 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 619

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 620 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 674


>gi|326317205|ref|YP_004234877.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374041|gb|ADX46310.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 732

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 271/754 (35%), Positives = 399/754 (52%), Gaps = 89/754 (11%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+  + +++L  ++      YY    P + D+EYD + +   A+  A P+L     P+ P
Sbjct: 17  EELGRRVAALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQALEAAHPELV---TPDSP 73

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQKKDDNS-IFFTLE 131
             ++ G +   L  V H++P LS+    + E      F  R+ R  +   D S + +  E
Sbjct: 74  TQRVIGAVMEGLTPVRHTVPMLSIRTETDTEASGAETFDARVRRELKLAPDASPVEYVAE 133

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEV 187
           PK DG  +++RYE G+ V AA RGDG  GEDV+  IR I  IP  L       +P ++EV
Sbjct: 134 PKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLPTGGDKGVPPVLEV 193

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGEVY+ + DF  LN+     G K + NPRNAA+G +R+L+      R L+FF +GLG  
Sbjct: 194 RGEVYMRRADFDRLNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLGDI 253

Query: 247 SEIFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           +     G      ++MLQ+++  GFPV   VR A     +V+++ E+   R  LPYDIDG
Sbjct: 254 TPAAEGGPDFATHFDMLQQLKAWGFPVAAQVRTALGAAELVAFHREVGESRDQLPYDIDG 313

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKV+  +LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+GRTG LTPVARL PV
Sbjct: 314 VVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPV 373

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV------- 414
            +GG  +TNATLHN   I+            + +RVGD+V+V+RAG+VIP+VV       
Sbjct: 374 FVGGVTVTNATLHNLFEIR-----------KKGVRVGDQVIVRRAGDVIPEVVGTVPAAL 422

Query: 415 ----------DIIVNE------------------RHPDAQPFSFPSFCPICQSRVVRDLN 446
                     D +V+                   R P    F  P  CPIC S VVR+  
Sbjct: 423 LPVAGALQGSDALVDAASGADGTAPGADAARAAPRSPYVPNFRMPRQCPICGSAVVRE-- 480

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
               K  A HRCTGGL C AQ+ E L HF  R A +IEGLG++ +D   + +     IR 
Sbjct: 481 ----KGEANHRCTGGLFCPAQRKEALLHFAQRRAMDIEGLGEKLVDQLVEGQ----VIRT 532

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
             D++ L        T + ++    + S  N+  ++ K ++ +L RF+F LGIRHVG   
Sbjct: 533 LPDLYRL------GLTALSSLDRMAEKSAQNVLAALEKSKHTTLPRFLFGLGIRHVGEAT 586

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A+ LA+++         ++ II  + +    L+ V  VG I+A+AI  F+  P N   VE
Sbjct: 587 AKDLARHFGG-------LDAIIGASVE---QLLEVNDVGPIVAEAIHTFFAQPHNREVVE 636

Query: 627 ALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
            L    V+   G   +  +  +  K  V TGTL  + R  A+E +   GA V+  +S+KT
Sbjct: 637 QLRACGVTWKEGPPAERATLPLAGKTFVLTGTLPTLSREDAKERLEAAGAKVAGSVSKKT 696

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             ++ G+  GSKL KAQ+LGV +++E   L LLQ
Sbjct: 697 HYVVAGEEAGSKLTKAQELGVPVLDEAGMLALLQ 730


>gi|300897228|ref|ZP_07115672.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
 gi|300358986|gb|EFJ74856.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
          Length = 671

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q++LG  AR+PRW ++ KF  ++  T + D++ ++GRTG +TPVARLEPV++ G L++
Sbjct: 295 AQQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFKVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|261253653|ref|ZP_05946226.1| DNA ligase [Vibrio orientalis CIP 102891]
 gi|260937044|gb|EEX93033.1| DNA ligase [Vibrio orientalis CIP 102891]
          Length = 669

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 252/708 (35%), Positives = 405/708 (57%), Gaps = 51/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +++L+ L + + YH   YY    P I D+EYD L R    +    P+L   + P+    +
Sbjct: 6   QEKLNQLRETLHYHGVKYYVEDNPEIPDAEYDRLMRDLMELESQHPELMSIDSPS---QR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF--FTLEPKID 135
           +GG        V H IP LSL+  ++  +L  F  R+    + +  ++ F  F  EPK+D
Sbjct: 63  VGGAPLDGFGSVKHEIPMLSLDNAFDDGELESFHKRM----KDRIPSATFDVFCCEPKLD 118

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  +++ YE G  V AA RGDG +GE+++  +R I  IP ++     P  IEVRGEV++ 
Sbjct: 119 GLAVSLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPARIEVRGEVFMP 178

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252
           K  F  LN+  +  G K + NPRNAA+G LR+L+     TR L+F+ + +G       + 
Sbjct: 179 KAGFDKLNELALKKGDKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGAELSS 238

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             Y+   +++  G P+    +Q ++   + +YY ++   R +L Y+IDG+V KVD  +LQ
Sbjct: 239 SHYQRFLQLKGWGLPMCPETKQVSSLDDVKAYYQDILERRESLTYEIDGVVIKVDNIALQ 298

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NAT
Sbjct: 299 EQLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNAT 358

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L            + VGD V+++RAG+VIP++V ++   R  +A+   FP 
Sbjct: 359 LHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVSERRPENAREIVFPE 407

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C+S+V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A +++GLG++ ++
Sbjct: 408 NCPVCKSQVER----VEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIE 461

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     +  PAD+F L      S   I  +   G  S  N+ D++NK +  +L R
Sbjct: 462 QLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALNKSKETTLPR 511

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F++SLGIR VG   A +LA+++       + ++ +   N++   +L+ V  +G+I+A  I
Sbjct: 512 FLYSLGIREVGEATAANLAQHF-------KTLDAVKIANHE---ALVEVQDIGEIVASHI 561

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYV 670
           + F+   +N+  ++ L+ +        EK+ S+   +  K +V TG+L ++ R  A+  +
Sbjct: 562 IAFFAQDKNLTVIDDLILQGVHWSDVEEKDESTPQPLAGKTVVLTGSLSQLTRSDAKAAL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  EE  + L+
Sbjct: 622 QNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIRTEEDLISLM 669


>gi|146329194|ref|YP_001209306.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A]
 gi|166215582|sp|A5EVZ5|DNLJ_DICNV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146232664|gb|ABQ13642.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A]
          Length = 678

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 257/712 (36%), Positives = 396/712 (55%), Gaps = 50/712 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI--AHAFPDLARSEDPNGPLNK 77
           EL +L Q I  H+  YY    P I DSE+DAL ++  A+  A   P  A S     P  +
Sbjct: 11  ELEALRQTIRAHEYAYYVLEAPNIADSEFDALMQKLRALEAASGLPIPADS-----PTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+ +     V H I  LSL+ ++N ++   F  R+    Q     +I    EPK DG 
Sbjct: 66  VGGKADNRFRNVAHHIAMLSLDNVFNADEFADFYRRLQE--QLSPTTAISLIAEPKFDGL 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I +RYE G    A+ RGDG +GEDV+  +R I TIP R+ +   P++IE+RGE+Y+ K 
Sbjct: 124 AINLRYENGILQRASTRGDGITGEDVTQNVRTISTIPLRLNTHTPPDVIEIRGEIYMPKK 183

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255
            F ALN++  A G K +ANPRNAASG LR+L+P     R L FF +G G+ +       Y
Sbjct: 184 AFYALNEQAAANGEKIFANPRNAASGSLRQLDPRITARRQLAFFAYGYGEITNYQLPETY 243

Query: 256 E-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           E +L++ R    PV +  ++A T    ++ Y +    R  LP+DIDG+V+KV+ F+ Q++
Sbjct: 244 EALLEQYRAWHIPVCSLHQKAATLPEALAAYQQFAKQREQLPFDIDGVVFKVNRFADQQR 303

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
            G  AR+PRW I+ KF   + +TR+  I++Q+GRTG +TPVARL+PV I G ++ +A+LH
Sbjct: 304 AGFLARAPRWAIAWKFPALEKTTRIEAIELQVGRTGAVTPVARLQPVTIAGVVVRSASLH 363

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I             +DIRVGD + ++RAG+VIP+VV +++ +R PDA  F+ P  C
Sbjct: 364 NAREI-----------ARKDIRVGDTIFIRRAGDVIPEVVSVVLEKRLPDAPVFAMPEHC 412

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C + +V++ +       A  RC+GGL C AQ++  L HF SR+A +I GLG++ +   
Sbjct: 413 PVCAAAIVQNEDE------AVARCSGGLHCPAQRVAALIHFASREALDIRGLGEKLIQQL 466

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     +R PAD+F L      S  ++      G  S  N+  +I+  +  +L RFI
Sbjct: 467 VAQE----FVRTPADLFCLTADDWASLPRM------GKKSAHNVMTAIDAAKKTTLARFI 516

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG+  A++LA ++           ++ A    D  +L  +  +GD++A  I  
Sbjct: 517 YALGIRGVGSVNAQALAAHF----------GDLAAFMAADRAALQEIEGIGDVVAADIEH 566

Query: 615 FYQNPRN-ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+ +  N       +   V  S    +K + + +  K +V TGTL  + R +AQ+ +  L
Sbjct: 567 FFADEDNRAVIAAIVAAGVHWSTELTKKIIDAPLLGKTVVITGTLPSLSRAEAQKRLETL 626

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GA V++ +SR+TD +++G + GSKL +AQ   V I++E Q     Q Y   +
Sbjct: 627 GAKVTSQVSRQTDFLLLGADAGSKLARAQAFSVPIIDEAQLQTWWQHYGNAV 678


>gi|89097084|ref|ZP_01169975.1| DNA ligase [Bacillus sp. NRRL B-14911]
 gi|89088464|gb|EAR67574.1| DNA ligase [Bacillus sp. NRRL B-14911]
          Length = 668

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/708 (37%), Positives = 399/708 (56%), Gaps = 66/708 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL +L  +  Y    YY   KP + DSEYD L +    + +  P L  ++ P     ++
Sbjct: 11  KELHNLLNQYGYE---YYVLDKPSVPDSEYDRLLKELMELENEHPQLKTADSPT---QRV 64

Query: 79  GGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GGE+ L +F KV H  P LSL   +N EDLR F  R+    ++    ++ +  E KIDG 
Sbjct: 65  GGEI-LDMFEKVEHQTPMLSLGNAFNEEDLRSFDRRV----RQTAGENLSYVCELKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + ++YE G F+  A RGDG  GED++  +R I +IP  L L+ P  IEVRGE ++    
Sbjct: 120 AVALKYEDGLFIQGATRGDGTIGEDITVNLRTIRSIP--LRLSEPVSIEVRGEAFMPGRS 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN      G +P+ANPRNAA+G LR+L+P    +R L+ F++G+  T +   +    
Sbjct: 178 FEALNKGKEERGEEPFANPRNAAAGSLRQLDPRIAASRNLDIFLYGISNTGDTGVESHSA 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LGF  N   R+  +   ++ Y +     R  L YDIDG+V KVD  +LQ++LG
Sbjct: 238 GLDYLETLGFKTNKERRKCASIEEVIEYVSSWTEKRPNLDYDIDGIVIKVDSLALQEELG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T L DI++ +GRTG++TP A LEPV + G  +  A+LHNE
Sbjct: 298 ATAKSPRWAIAYKFPAEEVVTTLRDIELSVGRTGVVTPTALLEPVRVAGTTVQRASLHNE 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DI++GD+V+VK+AG++IP+VV+++  +R  + + F  P+ CP 
Sbjct: 358 DLIR-----------EKDIKIGDKVVVKKAGDIIPEVVNVLAEQRTGEEREFIMPTHCPE 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 407 CGSELVR----LEGEV--ALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEKVVSQLFA 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I+  AD++ L         ++      G+ SV NL  +I   +  SLE+ +F 
Sbjct: 460 KE----LIKDVADLYKLTHEALIGMERM------GEKSVNNLVQAIEASKQNSLEKLLFG 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A++LA+++ S       ++N++A + DD   L  +  +G  +A AIV F+
Sbjct: 510 LGIRHVGAKAAKTLAQHFSS-------MDNLMAASEDD---LTAINEIGGKMAGAIVAFF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHE----KNVSSE-----IENKKLVFTGTLQKIQRHKAQ 667
           +        + L++E+  S    E    K V++E        K +V TG L  + R++A+
Sbjct: 560 EQEE----AKELIRELKESGVNMEYKGPKPVAAEDSDSFFAGKTIVLTGKLSILSRNEAK 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           E +  LG  VS  +S+KTD++I G++ GSKL KAQ LG+ I NEEQ +
Sbjct: 616 EKIEALGGNVSGSVSKKTDLLIAGEDAGSKLAKAQDLGIDIWNEEQLV 663


>gi|320173862|gb|EFW49042.1| DNA ligase [Shigella dysenteriae CDC 74-1112]
          Length = 671

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +     +L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHLELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLK--ALEAASI--------EELQKVPDVGIVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|255021565|ref|ZP_05293608.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
 gi|254968953|gb|EET26472.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
          Length = 659

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/691 (35%), Positives = 390/691 (56%), Gaps = 49/691 (7%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY+   P++ D+EYDAL R   A+  A P+L  ++ P     ++G     +   V + I
Sbjct: 9   AYYRDDAPVMSDAEYDALLRELRALEDAHPELRVADSPT---QRVGAAPVSAFGAVHYRI 65

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P  SL+ +++ E+ R +  R+ R     + ++   + EPK DG  + +RYE G+ V A  
Sbjct: 66  PMTSLDNVFSEEEFRDWWERLRR--ALPEVSNPVLSGEPKFDGLSVNLRYEGGRLVRAGT 123

Query: 154 RGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDG  GEDV+  +R I  +P  L     PE+IE+RGEV +    F  LN E    G  P
Sbjct: 124 RGDGVEGEDVTHNVRTIHNVPLQLQGSGWPELIELRGEVVLPVAAFRRLNRERERRGEAP 183

Query: 213 YANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+P     R L FF  G G+ SE        +LQ+    GF V   
Sbjct: 184 FANPRNAAAGSLRQLDPRITARRPLAFFPWGFGECSEPLGDSHVHILQRFATWGFSVTEF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           +R  +     ++Y+ ++ + R ++P++IDGLV+KVD+ +L+++LG  AR+PRW I+ KF 
Sbjct: 244 LRPIHGLDEALAYHADLAARRESMPFEIDGLVFKVDDLALRERLGFTARAPRWAIAWKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             +AST + DI   +GRTG++TPVA+L+PV++ G +++ A+LHNED ++           
Sbjct: 304 AHEASTLVEDIVASVGRTGVVTPVAQLQPVSVAGVMVSRASLHNEDEVR----------- 352

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +D+RVGD VLV+RAG+VIP++V ++ + R   +QP+  P+ CP+C S ++R  N     
Sbjct: 353 RKDVRVGDTVLVRRAGDVIPEIVTVLRDRRPAASQPWRMPTRCPVCGSEILRLPNE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              AHRCTGGL C AQ++  + HF SR A +I GLG++ +            ++  AD++
Sbjct: 409 --VAHRCTGGLYCPAQRMGAILHFASRRAMDIRGLGEKLVAQLVAQG----LVKTVADLY 462

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L R    +  ++      GD S   L D I   R     RF+++LGI  VG   A++LA
Sbjct: 463 HLDRDTLLALPRM------GDRSAQKLLDEIAGSRQTEFARFLYALGIHQVGESTAKALA 516

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           +++        ++  ++A + +D   L  VP VG ++A+AI+ F+    N   ++ALL  
Sbjct: 517 QHF-------GDLETLMAVSAED---LQEVPDVGPVVAEAILHFFAQTHNREVIQALLAA 566

Query: 632 VS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
               P + + E  V   ++ K+LV TG+L  + R  A+E +   G  V + +S + D +I
Sbjct: 567 GVHWPKVRKREGGV---LQGKRLVLTGSLPHLSREAAKEKIEAAGGKVVSAVSAQVDYVI 623

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VG+ PGSKL KAQ LG+  ++E  FL LL +
Sbjct: 624 VGEAPGSKLAKAQALGIPQLDEAAFLALLAE 654


>gi|167624496|ref|YP_001674790.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4]
 gi|190359286|sp|B0TKB2|DNLJ_SHEHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167354518|gb|ABZ77131.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4]
          Length = 667

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 254/709 (35%), Positives = 403/709 (56%), Gaps = 55/709 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + E++ L  E++ H+  YY    P I DSEYD L  R  A+    P    ++ P     +
Sbjct: 5   QTEIAQLTAELNQHNYRYYVDDSPSIPDSEYDRLLNRLKALETEHPQFCLADSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE      ++ H  P LSL+ +++ ++   F  RI          SI +  EPK+DG 
Sbjct: 62  VGGEALAKFEQIQHLKPMLSLDNVFDEQEFTAFNQRI-----TDKTGSISYCCEPKLDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            ++I Y  G F  AA RGDG +GE+++  +R I +IP R+   N P ++EVRGEV +   
Sbjct: 117 AVSITYRDGVFERAATRGDGQTGENITENVRTIKSIPLRLRGDNFPLLVEVRGEVIMPHK 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTSEIFAK 252
            F ALN+   A G K + NPRNAA+G LR+L+     +R L F+ + LG     S   A 
Sbjct: 177 AFDALNERARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESWELAD 236

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             Y  L+++R  G PV+  V+  ++   ++ YYN+++  RS+L ++IDG+V KV++ + Q
Sbjct: 237 SHYGQLEQLRSWGVPVSQEVKVCDSVAQVIEYYNDIQQRRSSLEFEIDGVVIKVNQIAHQ 296

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  ++NAT
Sbjct: 297 LSLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNAT 356

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I  L            ++VGD ++++RAG+VIP++V ++  +R  DA+  SFP+
Sbjct: 357 LHNADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAVVAEKRPDDAKEISFPA 405

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S V R      G+ VA  RCTGGL C AQ+ E +KHF SR A +I+G+G + ++
Sbjct: 406 RCPVCDSEVER----VEGEAVA--RCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVE 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     ++ PAD+F L     ++ T +E +   G  S T L  +I+  +  +  R
Sbjct: 460 QLIDKE----LVQSPADLFKL---TASAMTMLERM---GMKSATKLVAAIDVAKQTTFAR 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG   A +LA Y+       + ++ + A N +   + I+V  VG I+A  +
Sbjct: 510 FLYALGIREVGEATAANLAAYF-------KTLDALKAANEE---TFIKVDDVGTIVAAHL 559

Query: 613 VEFYQNPRNICAVEALLKEVS--PSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
             F   P N+  ++ L++     P+I    E+++S  ++ +  V TGTL ++ R+ A+  
Sbjct: 560 AHFLAQPHNLEVIDKLIEAGVHWPAIEEVAEEDLS--LKGQTWVLTGTLTQLNRNDAKAK 617

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA V+  +S+ TD ++ G   GSKL KAQ+LGVK+++EE  + +L
Sbjct: 618 LQLLGAKVAGSVSKNTDCLVAGAAAGSKLAKAQELGVKVIDEEALIAIL 666


>gi|262402686|ref|ZP_06079247.1| DNA ligase [Vibrio sp. RC586]
 gi|262351468|gb|EEZ00601.1| DNA ligase [Vibrio sp. RC586]
          Length = 669

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 257/711 (36%), Positives = 394/711 (55%), Gaps = 65/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L Q +  H   YY    P I D+EYD L R    I    P+L     P+ P  ++
Sbjct: 6   QRLTELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLEIEAQHPELI---TPDSPSLRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDL----RKFITRIYRFWQKKDDNSIFFTLEPKI 134
           GG        V H IP LSL+  ++  +L    R+   RI    Q        F  EPK+
Sbjct: 63  GGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSH------FCCEPKL 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  +++ YE G    AA RGDG +GE+++  +R I +IP R+  ++ P  +EVRGEV++
Sbjct: 117 DGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGVDFPVRLEVRGEVFM 176

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251
            K  F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G    +  
Sbjct: 177 PKAGFEALNARALQKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVG----VIE 231

Query: 252 KGQ-----YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            GQ     Y+   +++  G P+    +   +   + S+Y ++   R +L Y+IDG+V KV
Sbjct: 232 GGQLTTSHYQRFLQLKNWGLPICPETKVVTSLADVKSFYQDILQRRQSLVYEIDGVVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+  LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG 
Sbjct: 292 DDTQLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I+ L            + VGD V+V+RAG+VIP++V +++  R  DA+
Sbjct: 352 TVSNATLHNADEIERL-----------GVMVGDTVVVRRAGDVIPQIVSVVLERRQADAK 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+CQS + R      G+ VA  RCTGGL C AQ+ E LKHFVSR A ++EGL
Sbjct: 401 PIRFPTCCPVCQSEIER----VEGEAVA--RCTGGLICQAQRKEALKHFVSRKAMDVEGL 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +
Sbjct: 455 GDKVIEQLVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF+++LGIR VG   A +LA+++L+ +  AQ               LI VP VG 
Sbjct: 505 QTTLPRFLYALGIREVGEATALNLAQHFLTLEAIAQA----------SIEQLIEVPDVGG 554

Query: 607 IIAQAIVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           ++A  +  F+   RN   +  L  L    P +      V S +  K +V TG+  ++ R+
Sbjct: 555 VVASHLHAFFAQQRNQQVIAELVELGITWPVLAAVPVAVDSALAGKIVVLTGSFTQLSRN 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            A+  +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E+  +
Sbjct: 615 DAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLTKAAELGIQVLDEQALI 665


>gi|160899029|ref|YP_001564611.1| NAD-dependent DNA ligase [Delftia acidovorans SPH-1]
 gi|254781308|sp|A9BZW4|DNLJ_DELAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160364613|gb|ABX36226.1| DNA ligase, NAD-dependent [Delftia acidovorans SPH-1]
          Length = 703

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 261/725 (36%), Positives = 395/725 (54%), Gaps = 56/725 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    + ++   ++ +L  +++     YY    P + D EYD + ++  A+  A+P+L  
Sbjct: 16  PESGAAPDKVLAKVQALRAQLNQWAHEYYVLDTPTVPDGEYDRVFQQLQALEGAYPELV- 74

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQKKDDNS 125
              P+ P  ++ G +   L  V H++P LS+    + E      F  RI +  +  +   
Sbjct: 75  --TPDSPTQRVIGAVLDGLMPVRHAVPMLSIRTETDNEATGAEAFDARIRKELELAEGAP 132

Query: 126 -IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----N 180
            + +  EPK DG  + +RYE G+ V A  RGDG  GEDV+  IR I  IP  LSL     
Sbjct: 133 PVEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRKIP--LSLPEGKG 190

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF 239
           +P ++EVRGEVY+ + DF+ LN+   A G K +ANPRNAA+G +R+L+      R L+FF
Sbjct: 191 VPPVVEVRGEVYMGRADFVKLNERQQAAGGKSFANPRNAAAGSVRQLDSGIAAQRPLSFF 250

Query: 240 VHGLGKTSEIFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            +GLG+ +     G      Y MLQ +R  GFPV   V  A     +V+++  M + R+T
Sbjct: 251 AYGLGEITPAAQGGPDFVTHYAMLQTLRDWGFPVAPQVCIAKGAAELVAFHQRMGAERAT 310

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPY+IDG+VYKV+  + Q+QLG  +R PRW ++HK+  ++  TR+  IDIQ+GRTG LTP
Sbjct: 311 LPYEIDGVVYKVNSLAQQRQLGFVSREPRWAVAHKYPAEEMPTRMEGIDIQVGRTGKLTP 370

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL PV +GG ++TNATLHN   I+            + +R GD V+V+RAG+VIP+VV
Sbjct: 371 VARLAPVAVGGVIVTNATLHNLFEIR-----------KKRVRTGDTVVVRRAGDVIPEVV 419

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +  +R      F  P+ CPIC S V R       K  A HRCTGGL C AQ+ E + H
Sbjct: 420 GRVPGDRPAYVPNFRMPAACPICGSAVARP------KGEANHRCTGGLFCPAQRKEAILH 473

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F +R A +IEGLG + +D           +R   D++ L          + ++    + S
Sbjct: 474 FAARRAMDIEGLGDKLVDQLVDGH----VVRTLPDLYRL------GLVALASLDRMAEKS 523

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N+ D++ K +  +L RF+F LGIR VG   A+ LA+++        +++ I+  + + 
Sbjct: 524 AQNVLDALEKSKKTTLSRFLFGLGIRQVGESTAKDLARHF-------GQLDAIMDASVE- 575

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLV 653
              L++V  VG I+A++I  F+  P N   VE L    V    G   +  +  +    +V
Sbjct: 576 --QLLQVRDVGPIVAESIHTFFAQPHNREVVEQLRACGVHWEEGAAREQTAQPLAGMTVV 633

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL  + R +A+E +   GA VS  +S+KT  ++ G   GSKL KA++LGV +++E  
Sbjct: 634 LTGTLPTLGRDQAKEMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVTVLDEAG 693

Query: 714 FLFLL 718
            L LL
Sbjct: 694 MLALL 698


>gi|156973609|ref|YP_001444516.1| NAD-dependent DNA ligase LigA [Vibrio harveyi ATCC BAA-1116]
 gi|166216277|sp|A7MT54|DNLJ_VIBHB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156525203|gb|ABU70289.1| hypothetical protein VIBHAR_01312 [Vibrio harveyi ATCC BAA-1116]
          Length = 670

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/715 (35%), Positives = 395/715 (55%), Gaps = 57/715 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD + R    I    P+L   + P+  
Sbjct: 3   ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL---- 130
             ++GG+      +VTH +P LSL+  ++  +L  F  R         D  +  T+    
Sbjct: 61  -LRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKR-------AQDRVVGHTIKQYC 112

Query: 131 -EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188
            EPK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP ++     P  +EVR
Sbjct: 113 CEPKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKGWPTRLEVR 172

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT- 246
           GEV++ K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G   
Sbjct: 173 GEVFMPKAGFDKLNENARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVE 232

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               A   YE   +++  G P+    ++ ++   + +YY ++ + R  L Y+IDG+V KV
Sbjct: 233 GATLANSHYERFLQIKSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKV 292

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ ++Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEP+ +GG 
Sbjct: 293 DDIAIQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGV 352

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I+ L            + VGD+V+++RAG+VIP+VV +I   R   A+
Sbjct: 353 TVSNATLHNADEIERL-----------QVMVGDQVVIRRAGDVIPQVVSVIKERRPETAR 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP  CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GL
Sbjct: 402 EILFPDACPVCGSHVERIEGE------AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGL 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     +  PAD+F L     T   ++      G  S TN+ +++ K +
Sbjct: 456 GDKVIEQLVDRE----MVETPADLFKLSAGVLTVLERM------GPKSATNVVNALEKSK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF++SLGIR VG   A +LA+Y+           N+ A        LI V  +G 
Sbjct: 506 LTTLPRFLYSLGIREVGEATAANLAQYF----------KNLDAIQQATEEQLIEVQDIGV 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           I+A+ I  F+   +N   V+ LL +    P I   ++ V   +E K +V TGTL ++ R 
Sbjct: 556 IVAKHITTFFGEEKNQAVVQDLLAQGINWPEIAAPQEGVELPLEGKTVVLTGTLSQLGRS 615

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L++
Sbjct: 616 EAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLLNLMK 670


>gi|320354711|ref|YP_004196050.1| NAD-dependent DNA ligase [Desulfobulbus propionicus DSM 2032]
 gi|320123213|gb|ADW18759.1| DNA ligase, NAD-dependent [Desulfobulbus propionicus DSM 2032]
          Length = 670

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/708 (35%), Positives = 407/708 (57%), Gaps = 50/708 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A   L  L  ++ +H   YY    PII D EYDAL R   A+   +P+L  ++ P+   
Sbjct: 5   RAADRLEELRGQLRFHAHRYYVLDDPIISDGEYDALFRELLALEQEYPELVTADSPS--- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +++GG    S  +V H+ P LSL+ I+++++L  F+ + +RF   K D  + F  EPK+D
Sbjct: 62  HRVGGPPLHSFAQVEHASPMLSLDNIFDVQELAAFVDKSFRFL--KADGPLCFMTEPKLD 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLS---LNIPEIIEVRGEV 191
           G  + + Y +G     + RGDG  GED++A ++ +P+IP R ++   +   E + VRGEV
Sbjct: 120 GLAVELVYRQGMLAVGSTRGDGLVGEDITAQLKTVPSIPLRFINNEGIGGAEELIVRGEV 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           ++SK  F  LN +    G   +ANPRNAA+G LR+L+P     R L+FFV+G+     + 
Sbjct: 180 FLSKQGFQLLNQQRQEAGEPLFANPRNAAAGSLRQLDPRITARRRLDFFVYGVANPDSLA 239

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q E+   +  LGFPVN  V+   T   I   Y+ M   R  L Y+IDG+V K+++  
Sbjct: 240 AKSQEEVFHGLARLGFPVNPLVQVCATEEEIRQRYHFMLGARHDLTYEIDGIVVKINDLG 299

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW ++ KF   QA+T +  ++ Q+GRTG +TPVA L PV I G ++  
Sbjct: 300 LQQRLGTTARAPRWAVAWKFPATQATTVVERVEFQVGRTGAITPVAHLRPVEIDGVVVKR 359

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D         +++R  +D+   D VLV+RAG+VIP++V +I  +R     P  F
Sbjct: 360 ATLHNQD---------EIVR--KDLYRYDTVLVQRAGDVIPEIVKVIAEKRDGRQVPILF 408

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C   +V+  +       AA RC     C AQQ+++L HF  +   +IEGLGK+ 
Sbjct: 409 PAECPECGQPLVQKPDE------AAIRCVNP-DCPAQQVQKLIHFAGKSGLDIEGLGKKN 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   +       +R   D+F L+        K+ ++ G+G+ S  N+ ++I +RR++ L
Sbjct: 462 VEQLVREG----LVRSIPDLFNLR------MDKLASLDGWGEKSARNILEAIEQRRSLPL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +FI +LGIRHVG   A  LA+++       +E+  ++A   +   +L+RV  +G+  A 
Sbjct: 512 AQFIAALGIRHVGEVTASVLAEHF-------RELRELMAAKKE---ALLRVEGIGEQTAD 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +++E++Q+P  +  VE L +  +  + R      + +  +  +FTGTLQ + R +A++ V
Sbjct: 562 SVIEYFQDPLTVAMVEQLNR--AGVVIRSSTAGGAPLTGRVFLFTGTLQTLSRDEAKQLV 619

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             LGA V+  +S +   ++ G+  GSKL+KA+++G+ I+ E+QFL L+
Sbjct: 620 KALGAQVATSMSHRVTDVVSGEKAGSKLKKAKEMGLPILTEQQFLPLV 667


>gi|86148411|ref|ZP_01066703.1| DNA ligase [Vibrio sp. MED222]
 gi|85833825|gb|EAQ51991.1| DNA ligase [Vibrio sp. MED222]
          Length = 670

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 400/706 (56%), Gaps = 53/706 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           L  L + + YH   YY    P I D EYD L ++   +    P+L   + P+    ++GG
Sbjct: 9   LEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKLEEENPELVTVDSPS---QRVGG 65

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +      +VTH IP LSL+  ++ +DL  F  R+    +    N   F  EPK+DG  ++
Sbjct: 66  QPLDGFTQVTHEIPMLSLDNAFSDDDLDAFNKRMSD--RAPTANLKTFCCEPKLDGLAVS 123

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           + Y KG  V AA RGDG +GE+++  +R I +IP ++     PE IEVRGEV++ K  F 
Sbjct: 124 LLYVKGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKAGFD 183

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKGQY 255
            LN+  +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G  + +E+ +   Y
Sbjct: 184 KLNEMALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVVQGAEL-SNSHY 241

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           +   +++  G P+    +Q ++   + +YY ++ + R TL Y+IDG+V KVD+ + Q+ L
Sbjct: 242 QRFLQLKAWGLPMCPETKQLSSLEDVKAYYQDIMTRRDTLAYEIDGVVIKVDDIAAQETL 301

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  ++NATLHN
Sbjct: 302 GFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHN 361

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L            ++VGD V+++RAG+VIP++V ++ + R   A+   FP  CP
Sbjct: 362 ADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVFPDACP 410

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++GLG + ++   
Sbjct: 411 VCNSAVER----VEGEAVA--RCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVIEQLV 464

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             E     +  PAD+F L      S   I  +   G  S  N+  ++NK ++ +L RF++
Sbjct: 465 DRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTLARFLY 514

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGIR VG   A +LA+++ +      E+     H       L+ V  +GDI+A  +  F
Sbjct: 515 SLGIREVGEATAMNLAQHFKTL-----ELVQAATHEQ-----LVEVSDIGDIVASHLTSF 564

Query: 616 YQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +   +N   V+ L+ E+    P+I     +    +E K +V TG+L K+ R +A+  +  
Sbjct: 565 FSQEKNRAVVDQLI-ELGVNWPAIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKAALQA 623

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           LGA V+  +S+KTDI+  G+  GSKL KAQ LG++I  EE  + L+
Sbjct: 624 LGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669


>gi|317485271|ref|ZP_07944151.1| DNA ligase [Bilophila wadsworthia 3_1_6]
 gi|316923397|gb|EFV44603.1| DNA ligase [Bilophila wadsworthia 3_1_6]
          Length = 698

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 265/735 (36%), Positives = 421/735 (57%), Gaps = 78/735 (10%)

Query: 9   IEALSIEQA-RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           +++L +E A +K L  L   + YH+  Y+    P I D EY+A          AF +L R
Sbjct: 6   LQSLLVEDADKKRLEELRAFVIYHNHRYHTLDAPEITDDEYNA----------AFQELLR 55

Query: 68  SED-------PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            E+       P+ P N+IGG++  SL    H+    SL+ +++ E+ + F+ R+      
Sbjct: 56  LEERHPEWRSPDSPTNRIGGQVLSSLETKAHTRRMYSLDNVFDAEEWQGFLKRLD---NA 112

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           ++     F  +PK+DG  + + YE G+FV A  RGDG  GE V+  ++ +  +P+VL  +
Sbjct: 113 QEGLEHAFWCDPKMDGLALELVYENGRFVEALTRGDGEVGELVTEAMQTVRNLPKVLHGD 172

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238
            PE +EVRGEV   + DF  LN+ +     K +ANPRNAA+G +R+L+ T +T  R L F
Sbjct: 173 APERLEVRGEVIFRRRDFALLNERLRKENLKTFANPRNAAAGSIRQLD-TSVTASRPLRF 231

Query: 239 FVHGLG--KTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
             +G G  +   +     YE ++ ++R  GF    G R       + +YY  +   R +L
Sbjct: 232 LAYGFGDVRFGGVQPWSTYEEVMGRLRDFGFETPPGGRLCRGSEEVEAYYASLSEKRESL 291

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            Y+IDG+V K+++   Q+ LG  AR+PR+ ++ KF  +QA+T LLDI +Q+GRTG+LTPV
Sbjct: 292 AYEIDGVVMKLNDLEAQEALGYTARAPRFAVAWKFPAQQATTLLLDITVQVGRTGVLTPV 351

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A LEPVN+GG L++ ATLHNED I+            RD+R+GDRV+V+RAG+VIP+VV 
Sbjct: 352 AELEPVNVGGVLVSRATLHNEDEIR-----------NRDVRIGDRVVVQRAGDVIPEVVR 400

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            +++ER PD+QPF FP  CP C     R      G++  A RC   ++C A   + L HF
Sbjct: 401 AVLSERAPDSQPFVFPHVCPSCGQAASR----LEGEV--AWRCV-NVSCPAMIRQSLAHF 453

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           VS+   +IEGLG++ ++    S      ++ PAD+FTL         +++ +L +  + V
Sbjct: 454 VSKAGLDIEGLGQRWIELLVASG----RVKTPADLFTL---------RVDELLHYERMGV 500

Query: 536 ---TNLYDSINK-RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
              T   DS+++ ++  +L+R + +LGIRHVG + A++LA  Y        +++ + A +
Sbjct: 501 KLATKFVDSLDRAKKEATLQRLLCALGIRHVGEQTAKTLAATY-------ADMDVLRAAS 553

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EI 647
            ++   L  +P +G  +A +I  F+ +  N+ A+ A L+E+     R E  V+S     +
Sbjct: 554 PEE---LQNLPDIGPEVASSIKAFFDDEPNV-ALLARLRELGLWPVRQEAAVASMPVGPL 609

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             +K++FTG+L  I R KAQ+     GA ++  +SR+ ++++VGD PGSK EKAQ LG++
Sbjct: 610 AGQKILFTGSL-SIPRSKAQQMAENAGAEIAGSVSRRLNLLVVGDEPGSKREKAQALGIR 668

Query: 708 IMNEEQFLFLLQQYN 722
           I++E  FL LLQ  N
Sbjct: 669 IVDEAGFLALLQADN 683


>gi|269960659|ref|ZP_06175031.1| DNA ligase [Vibrio harveyi 1DA3]
 gi|269834736|gb|EEZ88823.1| DNA ligase [Vibrio harveyi 1DA3]
          Length = 670

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 254/714 (35%), Positives = 393/714 (55%), Gaps = 57/714 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD + R    I    P+L   + P+  
Sbjct: 3   ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL---- 130
             ++GG+      +VTH +P LSL+  ++  +L  F  R         D  +  T+    
Sbjct: 61  -QRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKR-------AQDRVVGHTIKQYC 112

Query: 131 -EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188
            EPK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP ++   + P  +EVR
Sbjct: 113 CEPKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKDWPTRLEVR 172

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT- 246
           GEV++ K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G   
Sbjct: 173 GEVFMPKAGFDKLNENARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVE 232

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               A   YE   +++  G P+    ++ ++   + +YY ++ + R  L Y+IDG+V KV
Sbjct: 233 GATLANSHYERFLQIKSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKV 292

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ ++Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG 
Sbjct: 293 DDIAIQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGV 352

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I+ L            + VGD+V+++RAG+VIP+VV +I   R   A+
Sbjct: 353 TVSNATLHNADEIERL-----------QVMVGDQVVIRRAGDVIPQVVSVIKERRPETAR 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP  CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GL
Sbjct: 402 EILFPDACPVCGSHVERIEGE------AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGL 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     +  PAD+F L     T   ++      G  S TN+ +++ K +
Sbjct: 456 GDKVIEQLVDRE----MVETPADLFKLSAGVLTVLERM------GPKSATNVVNALEKSK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF++SLGIR VG   A +LA+++ +     Q               LI V  +G 
Sbjct: 506 LTTLPRFLYSLGIREVGEATAANLAQHFKNLDAIQQATEE----------QLIEVQDIGV 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           I+A+ I  F+   +N   V  LL +    P I   ++ V   +E K +V TGTL ++ R 
Sbjct: 556 IVAKHITTFFDEEKNQAVVRDLLGQGINWPDIAAPQEGVELPLEGKTVVLTGTLSQLGRS 615

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+
Sbjct: 616 EAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLLNLM 669


>gi|163856016|ref|YP_001630314.1| DNA ligase [Bordetella petrii DSM 12804]
 gi|254781264|sp|A9II69|DNLJ_BORPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163259744|emb|CAP42045.1| DNA ligase [Bordetella petrii]
          Length = 697

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 264/730 (36%), Positives = 397/730 (54%), Gaps = 68/730 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QA + +++L  EI  H+  YY +  P + D+EYDAL R    +    P+L     P  P 
Sbjct: 7   QAAQRVAALRNEIEQHNVRYYVHDDPSVSDAEYDALMRELIQLETDHPELV---TPESPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLE 131
            ++G     +   V H++P LSL   ++ ++++ F  R+    +       D    +  E
Sbjct: 64  QRVGAAPLAAFGSVRHAVPMLSLGNAFDPDEVQAFDRRVGDTLRGAGLLRVDQQPEYFCE 123

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I++RYE G  V AA RGDG +GEDV+A +R I  +P  L    P ++EVRGEV
Sbjct: 124 LKLDGLAISLRYEDGVLVQAATRGDGQTGEDVTANVRTIRAVPLRLKGAAPRVLEVRGEV 183

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF------VHGL- 243
            +++ +F  LN    A   K + NPRNAA+G LR+L+P     R L FF      VHGL 
Sbjct: 184 LMNRAEFDRLNRSQAARDEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLP 243

Query: 244 GKTSEIF---AKGQYE-----------MLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEM 288
           G+ + +F   A G  E           ML  +  LG PVN    R+A    G++++Y ++
Sbjct: 244 GRQTALFDEPAPGAREESTLPRDTHGAMLDWLAELGLPVNTRHNRRAVGAEGLLAFYEQV 303

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
              R  LPYDIDG+VYKV+    QK LG  AR+PR+ ++HKF  ++A+TRLLDI++Q+GR
Sbjct: 304 GRERPGLPYDIDGVVYKVNSLPAQKVLGFVARAPRFALAHKFPAEEATTRLLDIEVQVGR 363

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVARL+PV +GG  +TNATLHNED ++            +D+R+GD V V+RAG+
Sbjct: 364 TGAITPVARLQPVFVGGVTVTNATLHNEDEVR-----------RKDVRIGDTVTVRRAGD 412

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+VV  +  +R  DA+ F  P  CP+C S + R  +       A  RCTGGL C+AQ+
Sbjct: 413 VIPEVVGPVPGKRPADAREFVMPVSCPVCGSAIERPEDE------AIARCTGGLFCAAQR 466

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
            + L H   R A +I+GLG++ +D    S      ++  AD+++L   +  +  ++    
Sbjct: 467 KQTLLHAAGRKALDIDGLGEKLIDQLVDSG----RVKSLADLYSLNAFELAALERM---- 518

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G  S  NL  +I++ R  SL R +F+LGIRHVG   AR +A+++ S +          
Sbjct: 519 --GKKSADNLVAAIDRARTPSLGRLLFALGIRHVGETTARDVARHFGSIETIM------- 569

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
              + D  +L   P VG ++A +I  F+  P N   ++ LLK              + + 
Sbjct: 570 ---DADEEALAGAPDVGPVVAGSIRRFFAEPHNREIID-LLKAQGVHPVPEAGPQGNTLA 625

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K  V TGT+    R +A  ++   G  VS  +S+KT  ++ G+  GSKL KAQ+LGV +
Sbjct: 626 GKTFVLTGTMPNWTRDEATRHILAAGGKVSGSVSKKTAYVVAGEEAGSKLAKAQELGVTV 685

Query: 709 MNEEQFLFLL 718
           ++E+    LL
Sbjct: 686 LDEDGLKALL 695


>gi|294340191|emb|CAZ88563.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Thiomonas sp.
           3As]
          Length = 686

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/720 (35%), Positives = 384/720 (53%), Gaps = 62/720 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q  +  + L  EI+  D  YY    P+  D++YDAL R    I    P+L     P+ P 
Sbjct: 9   QPAERATQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPEL---RTPDSPT 65

Query: 76  NKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEP 132
            ++GG        V H++P LS+  E     E    F  R+  R     DD  + +  E 
Sbjct: 66  QRVGGAPLPEFAPVRHAVPMLSIQTETDTTPEGAAAFDQRVRNRLGLSADDPPVNYCAEL 125

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K DG  I++RYE G+ V AA RGDG +GEDV+  +R I ++P  L  N P ++EVRGEV 
Sbjct: 126 KFDGLAISLRYEHGQLVQAATRGDGETGEDVTQNVRTIRSVPLQLRGNAPAVLEVRGEVL 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + + DF   N      G     NPRN A+G +R+L+P     R L F+ +G G+ +    
Sbjct: 186 MKRADFERYNARQRDKGLPTLVNPRNGAAGSIRQLDPAIAAQRPLAFYAYGWGEIAGWAQ 245

Query: 252 K--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           +    + ML  +   G PV            ++ ++  + + R +LP+DIDG+VYKVD  
Sbjct: 246 QPDTHHAMLDALETFGLPVAPQRVHGPGAQTLIDFHARIAAARDSLPFDIDGVVYKVDSL 305

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG R R P W ++HK+  ++ ST+++ IDIQ+GRTG LTPVA+LEPV +GG  +T
Sbjct: 306 ALQRELGFRNREPVWAVAHKYPAQERSTKVIGIDIQVGRTGKLTPVAKLEPVFVGGVTVT 365

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPF 428
           NATLHNED ++            +D+RVGD V+V+RAG+VIP+VV ++++ R  D  +PF
Sbjct: 366 NATLHNEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVSVVLSARPADVGEPF 414

Query: 429 S----FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                    CP+C S +VR+         A  RCTGGL C+AQ+ + + H+ SR A +IE
Sbjct: 415 DLYQRLGGQCPVCGSAIVREAGE------ADWRCTGGLFCAAQRKQAILHYASRRAMDIE 468

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +D        A  +R+  D++ L         K+  +    + S  NL  ++  
Sbjct: 469 GLGEKLVDQLVD----AGIVRVLPDLYRL------GLLKLAALDRMAEKSAANLLQALQA 518

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIRHVG   A+ LA+++            + A  +     L+ VP V
Sbjct: 519 SKTTTLARFLYALGIRHVGEATAKDLARHF----------GGLDAILDAPLEQLLEVPDV 568

Query: 605 GDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           G ++AQ+I  F+  P N   VE L        E +P     +++    +  K LV TGTL
Sbjct: 569 GPVVAQSIRTFFDQPHNREVVEQLRACGVHWSEAAP-----DRDAPKPLAGKTLVLTGTL 623

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A+  +   G  V   +S+KTD ++ G   GSKL KAQ+LGV +++E + L LL
Sbjct: 624 PTLSREEAKARIEAAGGKVVGSVSKKTDYVVAGAEAGSKLAKAQELGVTVLDEAELLKLL 683


>gi|332532506|ref|ZP_08408384.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038149|gb|EGI74596.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 672

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 401/713 (56%), Gaps = 57/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++++ L   +  H+  YY    P I DSEYD L R   A+    P+   ++ P     K+
Sbjct: 7   EQINHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALEMQHPEFLTADSPT---QKV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG       +V H +P LSL+  ++ E+   F  RI       D+  + F  EPK+DG  
Sbjct: 64  GGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKDRLMSTDE--LTFCCEPKLDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++I Y  G  V AA RGDG +GE+++  ++ I  +P  L  + P+ +EVRGEV++    F
Sbjct: 122 VSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEVFMDSAGF 181

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE-IFAKGQY 255
             LN E    G K + NPRNAA+G LR+L+ + IT  R L F+ +  G  ++    +  Y
Sbjct: 182 DKLNTEAQKRGEKVFVNPRNAAAGSLRQLD-SKITAKRPLMFYAYSTGLVADGSIPEDHY 240

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L+K+   G P+    +        + YY+++ + R  L Y+IDG+V K+++ +LQ++L
Sbjct: 241 QQLEKLTDWGLPLCPETKLVEGPKAALEYYSDILTRRGELKYEIDGVVIKINQKALQERL 300

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++NATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHN 360

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L            ++VGD V+++RAG+VIP++  +++  R  DA+   FP  CP
Sbjct: 361 GDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPVTCP 409

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           IC S V +      G+ VA  RCTGGL C AQ+ + +KHF SR A +I+GLG + +D   
Sbjct: 410 ICDSHVEK----VEGEAVA--RCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLV 463

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             E     I+ PAD+F L++         E++   G  S  NL  ++ + +  +L +F++
Sbjct: 464 DRE----LIKTPADLFILKQGH------FESLERMGPKSAKNLVTALEEAKGTTLAKFLY 513

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGIR  G   A++LA ++L+ +N    IN  I        SL +V  VG+I+A  +  F
Sbjct: 514 SLGIREAGEATAQNLANHFLTLENI---INASID-------SLTQVSDVGEIVATHVRGF 563

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK------LVFTGTLQKIQRHKAQEY 669
           +    N+  V AL+++     G +   +S+  E ++       V TGTL  + R+ A+  
Sbjct: 564 FDEEHNLEVVNALIEQ-----GVNWPALSAPSEEEQPLAGLTYVLTGTLNTLNRNDAKAR 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + QLGA VS  +S KTD ++ G+  GSKL KAQ LG+ I+ E++ + LLQ++N
Sbjct: 619 LQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTEDELIELLQKHN 671


>gi|229843861|ref|ZP_04464002.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
 gi|229812855|gb|EEP48543.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
          Length = 670

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/715 (36%), Positives = 412/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++++L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTKINNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIHHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G    AA RGDG  GED++A IR I  IP ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYINGVLTQAATRGDGTIGEDITANIRTIRNIPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+ K +
Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GVKSAENALNSLEKAK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIF+LGIR VG   A +LA ++ +     +           D   L +VP VG+
Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLDALKEA----------DLDQLQQVPDVGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLVKAQELNITVLTEEEFL 665


>gi|145634259|ref|ZP_01789970.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
 gi|145268703|gb|EDK08696.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
          Length = 670

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 259/715 (36%), Positives = 411/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTQLDNLRKTLRQYEFEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G    AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTS 247
           V++    F  LN   +    K +ANPRNAA+G LR+L+P   ++    LN +  G+ +  
Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYSIGIAEGV 234

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +     Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 235 NL-PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+   +
Sbjct: 456 GGKLIEQLVNRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+
Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665


>gi|226941791|ref|YP_002796865.1| DnlJ [Laribacter hongkongensis HLHK9]
 gi|254781355|sp|C1D4R5|DNLJ_LARHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226716718|gb|ACO75856.1| DnlJ [Laribacter hongkongensis HLHK9]
          Length = 692

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/698 (35%), Positives = 389/698 (55%), Gaps = 61/698 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+  A P+LA ++ P     ++GG    +   VTH +P
Sbjct: 24  YYVLDAPSVPDAEYDRLFRELEALEAAHPELASADSPT---RRVGGAPLAAFASVTHRLP 80

Query: 95  TLSLEKIWNI---EDLRKFITRIYRFWQKKDD----NSIFFTLEPKIDGTMITIRYEKGK 147
            LSL  +++     D       +  F Q+  D    + + + +EPK DG  +++ YE G 
Sbjct: 81  MLSLNNVFSDMQDSDPAGRHAELAAFDQRVRDGLGLDEVEYAVEPKFDGLAVSLVYEHGV 140

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLS----------LNIPEIIEVRGEVYISKND 197
            V  A RGDG +GE+V+  +R + +IP  L             +P  +EVRGEV + K D
Sbjct: 141 LVQGATRGDGETGENVTENLRTVRSIPLRLENAPGDDLFAPAVVPARLEVRGEVLMLKRD 200

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E  A G K +ANPRNAA+G LR+L+     +R L FF + + +   +     + 
Sbjct: 201 FERLNSEQDAAGLKRFANPRNAAAGSLRQLDSRITASRRLTFFAYAVAEADGVSLPATHS 260

Query: 257 -MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             +  +  LG PV+          G+   Y  M + R+ LP+DIDG+VYKV+  S Q +L
Sbjct: 261 ATMDWLAGLGLPVSRQRSVVRGLAGLTGAYEAMLAQRAGLPFDIDGVVYKVNRLSEQARL 320

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PR+ ++HKF  ++A T + DI +Q+GRTG +TPVARL+PV +GG  +TNATLHN
Sbjct: 321 GFVSRAPRFAVAHKFPAEEALTVVEDITVQVGRTGAITPVARLQPVFVGGVTVTNATLHN 380

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED ++            +D+ VGD V+V+RAG+VIP+VV ++   R P A+ F  P  CP
Sbjct: 381 EDEVR-----------RKDVHVGDTVIVRRAGDVIPEVVSVLAERRPPQARAFEMPLVCP 429

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S +VR+ +       A  RC+GGL CSAQ  + L+HF SR A ++EGLG++ +D   
Sbjct: 430 VCGSHIVREADE------AVARCSGGLYCSAQHKQALQHFASRKALDVEGLGEKLVDQLV 483

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  +  PAD+F L    Q +  ++E +   GD S  NL  +++  R+ +L RF++
Sbjct: 484 D----AGLVHTPADLFAL---DQPALARLERM---GDKSAENLVRALDACRHTTLARFVY 533

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR+VG   AR LA+++ +       ++ ++A + D    L+  P VG I+A++IV+F
Sbjct: 534 ALGIRNVGEATARDLARHFGT-------LDALMAADQD---MLMTAPDVGPIVARSIVDF 583

Query: 616 YQNPRNICAVEALLKE-VS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +    N   V+ALL   VS P +        + +  K  V TGTL  + R  A+  +   
Sbjct: 584 FAEAHNREVVDALLAAGVSWPVVETVTSAGVAGVSGKTFVLTGTLPTLGRDDAKARIEAA 643

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           G  V+  +S+KT  ++ G+  GSKL+KA +LG+ +++E
Sbjct: 644 GGKVTGSVSKKTHYVVAGEAAGSKLDKAHELGITVLDE 681


>gi|269968476|ref|ZP_06182487.1| DNA ligase [Vibrio alginolyticus 40B]
 gi|269826910|gb|EEZ81233.1| DNA ligase [Vibrio alginolyticus 40B]
          Length = 690

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 53/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL   + P+  
Sbjct: 23  ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPS-- 80

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133
             ++GG+   +  +VTH +P LSL+  ++  +L  F  R     ++    S+  +  EPK
Sbjct: 81  -QRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---ERVGSQSVKEYCCEPK 136

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  N  P  +EVRGEV+
Sbjct: 137 LDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVF 196

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G  + +E+
Sbjct: 197 MPKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGAEL 256

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A   YE   +++  G P+    ++  +   + +YY ++   R  LPY+IDG+V K+D+ 
Sbjct: 257 -AASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDDI 315

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++
Sbjct: 316 AVQERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVS 375

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +++GD V+++RAG+VIP+VV +I   R   A+   
Sbjct: 376 NATLHNADEIERL-----------QVKIGDHVVIRRAGDVIPQVVSVIKERRPETARDIV 424

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R          A  RC GGL C AQ+ + LKHFVSR A +++GLG +
Sbjct: 425 FPTQCPVCGSHVERIEGE------AVTRCMGGLVCQAQRKQALKHFVSRKALDVDGLGDK 478

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG-FGDVSVTNLYDSINKRRNI 548
            ++     E     ++ PAD+F L       +  I  +L   G  S  N+ +++ K +  
Sbjct: 479 VIEQLVDRE----MVKTPADLFKL-------SAGILTVLDRMGPKSAQNIVNALEKSKET 527

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA ++            + A  N     LI V  +G ++
Sbjct: 528 TLPRFLYSLGIREVGEATAANLAMHF----------KTLGAIQNATEEQLIEVQDIGAVV 577

Query: 609 AQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           AQ I  F+   +N   V+ LL++    P I   E+     +E K +V TGTL ++ R +A
Sbjct: 578 AQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTEA 637

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+
Sbjct: 638 KEALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELM 689


>gi|294504743|ref|YP_003568805.1| DNA ligase [Yersinia pestis Z176003]
 gi|262362805|gb|ACY59526.1| DNA ligase [Yersinia pestis D106004]
 gi|262366729|gb|ACY63286.1| DNA ligase [Yersinia pestis D182038]
 gi|294355202|gb|ADE65543.1| DNA ligase [Yersinia pestis Z176003]
          Length = 656

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/697 (35%), Positives = 401/697 (57%), Gaps = 49/697 (7%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + +H+  Y+    P I D+EYD + ++   +    P+L  ++ P     ++G     +  
Sbjct: 1   MRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPT---QRVGAAPLDAFE 57

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           +V H +P LSL+ +++ E    F  R++   + K    + F  E K+DG  +++ YE G+
Sbjct: 58  QVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELKLDGLAVSLLYENGE 115

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
            V AA RGDG +GE+++A +R I  IP R+   N+P  +EVRGEV++ +  F  LN+E  
Sbjct: 116 LVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAGFEQLNEEAR 175

Query: 207 AVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIFAKGQYEMLQKMRCL 264
             G K +ANPRNAA+G LR+L+P     R L FF +G+G        +   + L + +  
Sbjct: 176 RKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHIQCLMQFKAW 235

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+ +LQ+QLG  AR+PRW
Sbjct: 236 GLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLALQEQLGFVARAPRW 295

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++NATLHN D I+ L  
Sbjct: 296 ATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIERL-- 353

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                     +R+GD V+V+RAG+VIP+VV +++ +R  D +  +FPS CP+C S    D
Sbjct: 354 ---------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGS----D 400

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
           +    G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G + ++   + +     +
Sbjct: 401 IERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQ----YV 454

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
             PAD+F      Q +  K+  +   G  S  NL  ++ K +  +  RF+++LGIR VG 
Sbjct: 455 ENPADLF------QLTAGKLTGLDRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGE 508

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A +LA ++ +  N              D  +L  VP VG+++A+ ++ F     N   
Sbjct: 509 ATAANLAAHFRTLDNL----------RAADIETLKSVPDVGEVVAKHVMNFLSEEHNQKV 558

Query: 625 VEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           +E L K VS   P     E++  S    K +V TG+L  + R +A++ +T LGA VS  +
Sbjct: 559 IEELEKVVSWPEPQQIVVEES-DSPFAGKTVVLTGSLTILSRDEAKDRLTALGAKVSGSV 617

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+KT ++I G+  GSKL KAQ+LG+K+++E + + LL
Sbjct: 618 SKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLL 654


>gi|311694426|gb|ADP97299.1| NAD-dependent DNA ligase [marine bacterium HP15]
          Length = 678

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/708 (35%), Positives = 393/708 (55%), Gaps = 47/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L   I  H+  YY    P + D+EYD L R    +   +P+LA       P  ++
Sbjct: 10  QRVEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELASD---TSPTRRV 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G     S  +V H +P LSL+  ++ ++LR F  R+       +D  + +  EPK+DG  
Sbjct: 67  GSAAETSFEEVVHRLPMLSLDNAFSEDELRDFDRRVKDRLGITED--VEYVCEPKLDGLA 124

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G    AA RGDG+SGED++A IR IP++P ++   ++P+++EVRGEVY+ K+ 
Sbjct: 125 VSLHYENGALTTAATRGDGYSGEDITANIRTIPSVPLKLRGDDVPDLVEVRGEVYMPKDG 184

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE-IFAKGQY 255
           F  LN  +   G K + NPRNAA+G LR+   T   R  L    + +  T E +    Q+
Sbjct: 185 FEQLNRRLAERGEKTFVNPRNAAAGSLRQKKSTVTARRPLEMCAYSVAVTDESLLPDTQW 244

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L++++  GF +N  +R+A      +  Y+E+   R  LPY+IDG+V+KV+    QK L
Sbjct: 245 EGLKRVQSWGFRINPEMRKARGAEECLEAYSELMDKRDGLPYEIDGIVFKVNRLDQQKAL 304

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NATLHN
Sbjct: 305 GFVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNATLHN 364

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           D+ +GD V ++RAG+VIP+VV ++  +R   A+    P  CP
Sbjct: 365 MDEIRRL-----------DVHIGDTVFIRRAGDVIPQVVKVVAEKRPSGAREVELPRQCP 413

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S V++      G+ VA  RC+GGL C AQ+ E ++H+ SR A +IEGLG + +D   
Sbjct: 414 VCDSDVIQ----IEGEAVA--RCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDIMV 467

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   +   AD++ L      +T  +  +   G+ S  NL  +I++ RN  L RF++
Sbjct: 468 DQ----GMVETVADLYRL------TTDDLVKLERMGEKSAANLVAAIDRARNPVLWRFLY 517

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A++LA ++ + +  A            D  SL  VP VG I+A  I  F
Sbjct: 518 ALGIREVGEATAKALAGHFGTLEAIAAA----------DEESLQTVPDVGPIVAGHIRSF 567

Query: 616 YQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++   N   ++A L+E        E +     ++ +  V TGTL  + R +A+E +  LG
Sbjct: 568 FEQTHNRETLDA-LREAGVRWQEEEVREGEKPLKGQTWVLTGTLSGMTRDEAKEKLESLG 626

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A V+  +S+KT  ++ G+  GSKL KA+QL V +++E   + LL+++ 
Sbjct: 627 AKVAGSVSKKTACVVAGEAAGSKLAKAEQLEVPVLDEAGLVALLEEHG 674


>gi|5733399|gb|AAD49562.1|AF126866_1 NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis]
          Length = 672

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 256/704 (36%), Positives = 398/704 (56%), Gaps = 57/704 (8%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +  H+  YY    P I DSEYD L R   A+    P+   ++ P     K+GG       
Sbjct: 16  LEQHNYNYYVLDTPSIPDSEYDRLLRELSALETEHPEFLTADSPT---QKVGGAALSKFE 72

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           +V H +P LSL+  ++ E+   F  RI       D+  + F  EPK+DG  ++I Y  G 
Sbjct: 73  QVAHQVPMLSLDNAFSEEEFTAFNRRIKERLMSTDE--LTFCCEPKLDGLAVSIIYRDGV 130

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V AA RGDG +GE+++  ++ I  +P  L  + P+ +EVRGEV++    F  LN E   
Sbjct: 131 LVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEVFMDSAGFDKLNTEAEK 190

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCL 264
            G K + NPRNAA+G LR+L+ + IT  R L F+ +  G  ++    +  Y+ L+K+   
Sbjct: 191 RGEKVFVNPRNAAAGSLRQLD-SKITAKRPLMFYAYSTGLVADGNIPEDHYQQLEKLTDW 249

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G P+    +        ++YY ++ + RS L Y+IDG+V K+++ +LQ++LG  AR+PRW
Sbjct: 250 GLPLCPETKLVEGPKAALAYYRDILTRRSELKYEIDGVVIKINQKTLQERLGFVARAPRW 309

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I++KF  ++  T+LLD+D Q+GRTG +TPVARL+PV +GG  ++NATLHN D       
Sbjct: 310 AIAYKFPAQEEITQLLDVDFQVGRTGAITPVARLKPVFVGGVTVSNATLHNSD------- 362

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
             +V R G  ++VGD V+++RAG+VIP++  +++  R  DA+   FP+ CPIC S V + 
Sbjct: 363 --EVARLG--VKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPTTCPICDSHVEK- 417

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                G+ VA  RCTGGL C AQ+ + +KHF SR A +I+GLG + +D     E     I
Sbjct: 418 ---VEGEAVA--RCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRE----LI 468

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           + PAD+F L++         E++   G  S  NL  ++ + +  +L +F++SLGIR  G 
Sbjct: 469 KTPADLFILKQGH------FESLERMGPKSAKNLVTALEEAKGTTLAKFLYSLGIREAGE 522

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A++LA ++L+ +N    IN  I        SL +V  VG+I+A  +  F+    N+  
Sbjct: 523 ATAQNLANHFLTLENV---INASID-------SLTQVSDVGEIVAAHVRGFFDEEHNLAV 572

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKK------LVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           V AL+ +     G +   +S+  E ++       V TGTL  + R+ A+  + QLGA VS
Sbjct: 573 VNALIDQ-----GVNWPALSAPSEEEQPLAGLTYVLTGTLNTLNRNDAKARLQQLGAKVS 627

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             +S KTD ++ G+  GSKL KAQ LG+ I+ E++ + LL ++N
Sbjct: 628 GSVSAKTDALVAGEKAGSKLTKAQDLGIDILTEDELIELLIKHN 671


>gi|116334213|ref|YP_795740.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367]
 gi|122269104|sp|Q03Q13|DNLJ_LACBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116099560|gb|ABJ64709.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367]
          Length = 676

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 257/712 (36%), Positives = 406/712 (57%), Gaps = 53/712 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PI+ L++EQA +E + L  ++      YY+   P + D  YD +  R  A+  AFP++  
Sbjct: 5   PIKTLTVEQAAEEAADLRPQLLEWGKQYYEADAPSVEDDVYDRVYARLVALETAFPEIVT 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++GG     L KVTH IP LSL  ++++++L +F  R+    +   D    
Sbjct: 65  ---PDSPTQRVGGSSRSDLPKVTHDIPMLSLGDVFSLDELTEFDERL----RGNVDTPFD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  E KIDG  I++RYE GKFV  + RG+G  GED++A ++ I +IP+ LS   P  IEV
Sbjct: 118 YNCELKIDGLAISLRYENGKFVQGSTRGNGQIGEDITANLKTIKSIPQTLSR--PLTIEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245
           RGE Y+ K  FLALN+   A G+ P+ANPRNAA+G LR+L+ T +T  R L  F++ +  
Sbjct: 176 RGECYMPKAAFLALNERREAAGQAPFANPRNAAAGSLRQLD-TRVTADRQLATFMYNVAD 234

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              +  + Q  +L ++  LGF  N   R A+    + +Y    ++ R+ L Y IDG+V K
Sbjct: 235 YEPLTTRTQSGLLDELAELGFTTNATYRVAHDMADVAAYIETYQAQRTELAYGIDGIVIK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
            ++  LQ+ LG   + PRW I++KF  ++  TR+LDI+  IGRTG++TP A +EPV + G
Sbjct: 295 ANDLPLQRSLGATVKVPRWAIAYKFPPEEVQTRVLDIEWTIGRTGVVTPTAIMEPVALAG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  A+LHN DY+             +DIR+GD VL+ +AG++IP++   +  +R  +A
Sbjct: 355 STVARASLHNPDYLI-----------AKDIRIGDTVLLHKAGDIIPEISQYVAAKRPAEA 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + +  P+ CP C + +V  L+ +      A RC     C AQ  E + HF SR+A NI G
Sbjct: 404 KAYVIPTTCPSCGAELVH-LDDEV-----ALRCINP-RCPAQLAEGMNHFASRNAMNIAG 456

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG Q +   F        ++  AD++ L      +T ++  +  FG+ S  NL  +I+  
Sbjct: 457 LGPQIVAQLFDRN----LVQDVADLYRL------TTDQLLTLDKFGEKSAQNLLTAIDNS 506

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           RN SLER +F LGIRHVGA+ ARSLA  +        ++ +++A +++    +  +  VG
Sbjct: 507 RNNSLERLLFGLGIRHVGAKAARSLAAAF-------GDMASLMAADSE---QISAIDTVG 556

Query: 606 DIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            IIA ++V ++ N +    +  ++A+   ++ + G    N +SE   K++V TG LQ++ 
Sbjct: 557 GIIADSVVTYFANTQVHELVAKLQAVGVNMTYTSGTPATNSTSEFTGKRVVLTGKLQELT 616

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           R +A E++ Q GA V+  +S+KTD++I G+  GSKL KAQ L V + NE Q 
Sbjct: 617 RPQATEWLEQHGATVTGSVSKKTDLLIAGEAAGSKLAKAQSLDVPVWNEAQL 668


>gi|261345310|ref|ZP_05972954.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
 gi|282566645|gb|EFB72180.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
          Length = 678

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/708 (34%), Positives = 406/708 (57%), Gaps = 49/708 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++ SL+Q++ +H+  Y+    P I D EYD L +    +    P+L  ++ P     +
Sbjct: 11  KQKIDSLKQQLRHHEYLYHVLDAPEIPDVEYDKLMQELKGLEAENPELITTDSPT---QR 67

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +   V H +P LSL+ +++ E    F  R+    +  +   + F  E K+DG 
Sbjct: 68  VGAAPLTAFGTVRHEVPMLSLDNVFDEESYLAFDKRVKD--RLNNHTELTFCCELKLDGL 125

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ YE G+ V AA RGDG  GE+++  +R I  IP R+   NIP  +E+RGEV++ + 
Sbjct: 126 AVSLLYENGELVQAATRGDGSVGENITVNVRTIKAIPLRLRGDNIPARVEIRGEVFMPQK 185

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAKGQ 254
            F A+N+E      K +ANPRNAA+G LR+L+P     R L F+ +G+G           
Sbjct: 186 GFEAMNEEARRTDGKIFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGNTLPDTH 245

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE L + +  G PV+  V+       ++ +Y+ ++ IR TL +DIDG+V KV++ + Q++
Sbjct: 246 YERLMQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGFDIDGVVIKVNDIATQEK 305

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW  + KF  ++  T L D++ Q+GRTG +TPVARLEPV + G +++NATLH
Sbjct: 306 LGFVSRAPRWATAFKFPAQEQLTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLH 365

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            +R+GD V+++RAG+VIP++V +++++R  D++  +FP+ C
Sbjct: 366 NADEIERL-----------GVRIGDTVVIRRAGDVIPQIVSVVMDKRPADSREITFPTQC 414

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S    D+    G+ VA  RCTGGL C AQ  E LKHFVSR A +++G+G + ++  
Sbjct: 415 PVCHS----DIERVEGEAVA--RCTGGLTCGAQLKESLKHFVSRRAMDVDGMGDKIIEQL 468

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             +E     ++  A ++      Q S  K+  +   G  S   L D++ K +  +L RFI
Sbjct: 469 VDAE----YVKNAAQLY------QLSAGKLTGLERMGPKSAQKLIDALEKSKQTTLARFI 518

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA +Y S       ++ ++A + +   SL  V  +G+++A+ +V 
Sbjct: 519 YALGIREVGEATAANLASHYAS-------LDAVMAADEE---SLKAVQDIGEVVAKHVVN 568

Query: 615 FYQNPRNICAVEALLKEVS---PSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F+    N   +  LL   +   P +   +   + S    K +V TG++ ++ R +A++ +
Sbjct: 569 FFHEEHNRQVIHDLLTIANIHWPEVKVVNSDEIDSPFAGKTVVLTGSMSRLTRDEAKDQL 628

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             LGA V+  +S+KTD++I G+  GSKL KA +LGVK+++E++ + LL
Sbjct: 629 VALGAKVAGSVSKKTDMVIAGEAAGSKLAKAIELGVKVIDEDELVRLL 676


>gi|156740882|ref|YP_001431011.1| DNA ligase [Roseiflexus castenholzii DSM 13941]
 gi|190359279|sp|A7NHP6|DNLJ_ROSCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156232210|gb|ABU56993.1| DNA ligase, NAD-dependent [Roseiflexus castenholzii DSM 13941]
          Length = 718

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 256/721 (35%), Positives = 387/721 (53%), Gaps = 68/721 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +   +L ++I YH+  YY   +P+I D+EYDAL R    +  A P+L     P+ P  ++
Sbjct: 8   RRAETLREQIRYHNYRYYVLDEPVISDAEYDALMRELRELEAAHPELV---TPDSPTQRV 64

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G   +    KV H +P LSL   ++   +R +  R  R      D  + F +EPKIDG  
Sbjct: 65  GAPPSEQFAKVQHVVPMLSLANAFDEAGMRAWYDRTLRLL--GSDAQVAFVVEPKIDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS------------LNIPEIIE 186
           +T+ Y  G  V  A RGDG  GEDV+A +R I +IP  L               +P ++E
Sbjct: 123 VTLIYRNGVLVRGATRGDGEIGEDVTANLRTISSIPLRLGSFANDDSAPTNPTAVPPLLE 182

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           VRGEVY+   DF+ LN+++   G K  ANPRNAA+G LR+ +P   +R  L FF +G+G+
Sbjct: 183 VRGEVYMRIADFMRLNEQLAVAGEKVAANPRNAAAGSLRQKDPAVTSRRPLRFFAYGVGQ 242

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              +  + Q+E L  +R LGFPVN   R+   F   ++Y  E  + R  L Y++DG+V K
Sbjct: 243 VEGVALQTQWETLHFLRALGFPVNRDARRFERFEEALAYCREWMTRRDELEYEVDGVVVK 302

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +D F+ Q +LG   R PRW I+ KF  ++A +RLLDI + +GRTG++TP A +EPVNIGG
Sbjct: 303 IDSFAQQAELGVVGRDPRWAIAFKFPAREAVSRLLDIVVNVGRTGVITPNAVIEPVNIGG 362

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             + NA+LHN DYI             RDIR+GD V+VKRAG+VIP +V  +V  R    
Sbjct: 363 VTVRNASLHNADYI-----------AERDIRIGDYVIVKRAGDVIPHIVGPVVARRDGSE 411

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + +  P+ CP C + + R      G++  A+RC     C AQ   R++HFVSR A +I G
Sbjct: 412 RVWQMPATCPACGTPLER----AEGEV--AYRCPNFGICPAQITRRIEHFVSRSAMDIAG 465

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G++Q+  F +       ++  AD++TL      +      I G+G   + NL ++I + 
Sbjct: 466 IGEKQVQLFVERG----WVQDVADLYTL------TPEHFHGIEGYGPKRIANLLNAIAES 515

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY----LSYQNFAQEINNIIAHNNDDWLSLIRV 601
           ++  L R I  LGIR+VG  +A+ LA ++          A EI+++              
Sbjct: 516 KDRPLHRLIVGLGIRYVGEVVAQILADHFGSLDALAAASADEIDDLEG------------ 563

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTL 658
             +G  IA ++ E++  P +  A+ A LK V   + + G         +  K  V TGTL
Sbjct: 564 --IGPAIAASVAEYFARPES-KALIAKLKRVGVRTEAKGPAVAPKGDALAGKTFVITGTL 620

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFLFL 717
             + R +A   +   G  VS  +S+KTD ++VG  P G+K+ KAQ+LG+  ++E   L L
Sbjct: 621 PSMSREEAGALIVAHGGRVSGSVSKKTDYLVVGSEPGGTKVAKAQELGIPTLDEAGLLAL 680

Query: 718 L 718
           +
Sbjct: 681 I 681


>gi|15642875|ref|NP_227916.1| DNA ligase [Thermotoga maritima MSB8]
 gi|7674016|sp|Q9WXV5|DNLJ_THEMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4980590|gb|AAD35194.1|AE001696_8 DNA ligase [Thermotoga maritima MSB8]
          Length = 688

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 261/704 (37%), Positives = 394/704 (55%), Gaps = 49/704 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E+  L +EI YH+  YY  + P+I D EYD L RR   +   +P+L     P+ P  ++
Sbjct: 12  EEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELV---TPDSPTQRV 68

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++      V HS+P LSL+  +N E++ +F  R+ +  Q+ +   + +  E KIDG  
Sbjct: 69  GGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKALQEAE---VEYVAELKIDGVS 125

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I +RYE G+FV  A RGDG  GEDVS  ++ + +IP  L L  P  IEVRGE+Y+  ++F
Sbjct: 126 IALRYENGRFVLGATRGDGIEGEDVSENVKTVRSIP--LRLRKPVTIEVRGEIYMPVDEF 183

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             LNDE    G  P+ANPRNAA+G LR+LN   +  R L+ F++ +        K Q+E 
Sbjct: 184 KRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSFIYYVVHPENYGLKTQWEA 243

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ ++ LGF VN   R       ++ Y+ E K  +  L Y +DG+V KV+ F  Q+ LGE
Sbjct: 244 LQFLKELGFKVNPHSRLCKNIQEVIDYWKEWKERKRELDYWVDGVVVKVNRFDFQRILGE 303

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +++PRW I+ KF  +QA TR+LD+ IQ+GRTG+LTPVA LEPV + G ++  A+LHN +
Sbjct: 304 TSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELEPVQLAGTIVKRASLHNFE 363

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI+            +DIR+GD V V++AG +IP++V  I   R  + +    P  CP+C
Sbjct: 364 YIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGNEKEIKPPDKCPVC 412

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
             +V + LNP       A RC     C A+    L+  VSR+A +IEGLG++ +D     
Sbjct: 413 GGKVGK-LNPDE----VAIRCLNP-HCPAKLKRALRTLVSREALDIEGLGEKLIDRLVD- 465

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  I+  ADIF L     T     +   G G  ++  +   I + +   L + I  L
Sbjct: 466 ---AGLIKDIADIFYL-----TPFDLAQLGPGIGQRTIAKILQEIEEAKKRPLHKLITGL 517

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI  VG + A+ LA+++ S +  A          +  + +L  +P +G  IA++IVE+++
Sbjct: 518 GIPMVGQKTAKILAEHFKSLEAIA----------DASYETLKDIPGIGPEIAKSIVEYFR 567

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           NP+    +E L K     +   EK V  +I        TGTL+   R +  E++ +LGA 
Sbjct: 568 NPKTREIIEKLKK---AGVKLEEKVVKLDILRGLTFAVTGTLKNFTREEIIEFLEKLGAK 624

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V   +SR TD +IVG+NPGSK E+A+ L VK+M+EE+FL  +++
Sbjct: 625 VVNSVSRNTDYLIVGENPGSKYERAKMLKVKMMSEEEFLEFVRK 668


>gi|258404928|ref|YP_003197670.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692]
 gi|257797155|gb|ACV68092.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692]
          Length = 678

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 252/720 (35%), Positives = 400/720 (55%), Gaps = 57/720 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  +  ++SL + I +HD  YY    P I D+EYDAL +   A+ H +P+L   +DP
Sbjct: 1   MAEQSVQSRVASLRETIRHHDYLYYVLDAPQISDNEYDALFKELQALEHRYPEL---DDP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G +   +     HS+P  SL+ ++++E+ + ++ R+ R    ++   I F ++
Sbjct: 58  ASPTKRVGQKPLAAFAHREHSLPMASLDNVFSLEEFQTYVQRLERLLPGEE---ITFWVD 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVR 188
           PK+DG  + + +E G++V A  RGDG  GEDV+A +R + T+P   R   + +P+ IEVR
Sbjct: 115 PKMDGLAVEVIFEAGRYVAACTRGDGRVGEDVTAQMRTVRTVPLQLREEGVEVPDYIEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEV + ++DF  LN      G +P+ANPRNAA+G +R+L+P     R L FF +G+G   
Sbjct: 175 GEVVMHEDDFALLNKRQTENGARPFANPRNAAAGSVRQLDPEVTAKRPLRFFAYGVGVVR 234

Query: 248 EIFAKG----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              AK     Q E++Q +R LG PV    R A +   + +YY ++ + R +L ++IDG+V
Sbjct: 235 WSGAKTVWSRQSEVMQGLRELGLPVAPKARWAESAAAVQTYYQDLGANRHSLGFEIDGVV 294

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD    Q +LG  +R+PRW ++ KF   QA T L DI +Q+GRTG+LTPVA L PV +
Sbjct: 295 AKVDRLEQQHRLGSTSRAPRWALALKFPAHQAETVLEDIQVQVGRTGVLTPVAVLRPVEV 354

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++ ATLHNED I+            + +RVGD VLV+RAG+VIP+VV  + ++R  
Sbjct: 355 GGVTVSRATLHNEDEIR-----------AKGLRVGDPVLVQRAGDVIPEVVRPLTDKRTG 403

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           + + F FP  CP C S V R      G  V A RC    AC AQ +++L HFVS+   +I
Sbjct: 404 EEKTFVFPQTCPACGSPVSR-----LGDEV-ARRCVNA-ACPAQVVQQLIHFVSKAGLDI 456

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI- 542
           EGLG++ +  F    D    +R PAD+F L+ R      ++      GD S  N+  +I 
Sbjct: 457 EGLGERWVQIFV---DQGL-VRSPADLFRLKERDLVPLERM------GDKSARNMIQAIA 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           + + +  L++ I +LGIR VG   A  LA  +   +  A+  +  + H          +P
Sbjct: 507 SAKSSARLDQLISALGIRLVGRRTAEILATSFEDLEALAEADSETLQH----------IP 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK-EVSP---SIGRHEKNVSSEIENKKLVFTGTL 658
            +G  +A ++  F+  P N   +  L +  V P   +    + + S+ +E  + V TG L
Sbjct: 557 DIGPEVAASLRRFFTTPANQALIRDLHQLGVWPRRETGNGSDADQSAPLEGLRFVLTGAL 616

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R  A++ +   G  V + +S K D ++ G+NPGSKL+KA++L + +++E     LL
Sbjct: 617 SDMSRSAAKDAIESRGGKVVSAVSSKVDYVVAGENPGSKLDKARELDIAVLDETGLHDLL 676


>gi|209522379|ref|ZP_03270993.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
 gi|209497185|gb|EDZ97426.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
          Length = 688

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/709 (36%), Positives = 399/709 (56%), Gaps = 51/709 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+   +  YY   +P + D+EYD L +  + I    PDL     P+ P  ++GGE  
Sbjct: 21  LRAELERANYAYYVLDQPDLPDAEYDKLFKELERIEAEHPDLIV---PDSPTQRVGGEAA 77

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTLEPKIDGTMIT 140
                V H  P LSL   +  ED+  F  RI              + +  E K DG  I+
Sbjct: 78  SGFEPVVHDQPMLSLNNGFADEDIVAFDKRIGDALGNNASEPAVPVDYAAELKFDGLAIS 137

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           +RY  G FV A+ RGDG +GE+V+  +R I +IP ++    +P +++VRGEV + K DF 
Sbjct: 138 LRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPRVLDVRGEVLMFKRDFE 197

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY-E 256
            LN+   A  ++ +ANPRNAA+G LR+L+ + IT  R L+FF +G+G    I     + E
Sbjct: 198 RLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLEGIEMPATHSE 256

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L   + +G PVN+         G++ +++ +   R  LPYDIDG+VYKV+    Q+ LG
Sbjct: 257 LLDWYKEMGLPVNSERAVVQGAEGLLGFFHAVGEKRDRLPYDIDGVVYKVNRRDEQETLG 316

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLHNE
Sbjct: 317 FVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNE 376

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA+ F  P+ CP+
Sbjct: 377 DEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAREFVMPTQCPV 425

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S + R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D   +
Sbjct: 426 CGSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVE 479

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RFI++
Sbjct: 480 QN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYA 529

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG   A+ LAK++ S       ++ I+  + ++   L+ V  VG ++A++I +F+
Sbjct: 530 LGIRHVGESTAKDLAKHFGS-------LDPIMDASLEE---LLEVNDVGPVVAESIHQFF 579

Query: 617 QNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
               N   +E L    K   P      K     +  + +V TGTL  + R  A+E +   
Sbjct: 580 AEDHNRTVIEQLRAPGKVAWPEGPPAPKAPQGVLVGQTVVLTGTLPNLSREDAKEMLEAA 639

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           GA V+  +S+KT  ++ G + GSKL KA++LG+ +++E+    LL+ ++
Sbjct: 640 GAKVAGSVSKKTSYVVAGADAGSKLAKAEELGIPVLDEDGMRKLLEGHS 688


>gi|218710253|ref|YP_002417874.1| NAD-dependent DNA ligase LigA [Vibrio splendidus LGP32]
 gi|254782307|sp|B7VIK3|DNLJ_VIBSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218323272|emb|CAV19449.1| DNA ligase [Vibrio splendidus LGP32]
          Length = 670

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 256/705 (36%), Positives = 395/705 (56%), Gaps = 51/705 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           L  L + + YH   YY    P I D EYD L ++   I    P+L   + P+    ++GG
Sbjct: 9   LEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEDENPELVTVDSPS---QRVGG 65

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +      +VTH IP LSL+  ++ +DL  F  R+    +    N   F  EPK+DG  ++
Sbjct: 66  QPLDGFTQVTHEIPMLSLDNAFSDDDLDAFNKRMSD--RAPTANLETFCCEPKLDGLAVS 123

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           + Y  G  V AA RGDG +GE+++  +R I +IP ++     PE IEVRGEV++ K  F 
Sbjct: 124 LLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKAGFD 183

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYE 256
            LN+  +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G       +   Y+
Sbjct: 184 KLNEMALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVVQGAELSNSHYQ 242

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
              +++  G P+    +Q ++   + +YY ++ + R TL Y+IDG+V KVD+ + Q+ LG
Sbjct: 243 RFLQLKAWGLPMCPETKQLSSLEDVKAYYQDIMTRRDTLAYEIDGVVIKVDDIAAQETLG 302

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  ++NATLHN 
Sbjct: 303 FVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNA 362

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L            ++VGD V+++RAG+VIP++V ++ + R   A+   FP  CP+
Sbjct: 363 DEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVFPDACPV 411

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++GLG + ++    
Sbjct: 412 CNSAVER----VEGEAVA--RCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVIEQLVD 465

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     +  PAD+F L      S   I  +   G  S  N+  ++NK ++ +L RF++S
Sbjct: 466 RE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYS 515

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +LA+++ +      E+     H       L+ V  +GDI+A  +  F+
Sbjct: 516 LGIREVGEATAMNLAQHFKTL-----ELVQAATHEQ-----LVEVSDIGDIVASHLTSFF 565

Query: 617 QNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
              +N   V+ L+ E+    P+I     +    +E K +V TG+L K+ R +A+  +  L
Sbjct: 566 SQEKNRAVVDQLI-ELGVNWPAIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKAALQAL 624

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           GA V+  +S+KTDI+  G+  GSKL KAQ LG++I  EE  + L+
Sbjct: 625 GAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669


>gi|296046569|gb|ADG86426.1| NAD-dependent DNA ligase [Francisella novicida]
          Length = 689

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 252/715 (35%), Positives = 403/715 (56%), Gaps = 71/715 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY   +P + D+EYD L      +    P+L   + P+    K+GG+   S  +VTH +P
Sbjct: 22  YYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTIDSPS---QKVGGQALKSFTQVTHQLP 78

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ +++++D   F+ R+    +  D+ +I F  EPK+DG  +++RYE G+ + AA R
Sbjct: 79  MLSLDNVFSLDDFHAFVKRVKD--RLNDNQAIVFCAEPKLDGLAVSLRYEHGQLIQAATR 136

Query: 155 GDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
           GDG  GE+++  IR I +IP  L      + P+I+EVRGEV++ K  F ALN      G 
Sbjct: 137 GDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTXAKKRGE 196

Query: 211 KPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--------------KTSEIFAKGQ 254
           K +ANPRNAA+G LR+L+ + IT  R L F+ + LG               T++ FA   
Sbjct: 197 KGFANPRNAAAGSLRQLD-SKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANSH 255

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L +++ LG P+   VR   +     ++Y ++ + RS L Y+IDG V KVDE SLQK+
Sbjct: 256 HERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQKR 315

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NATLH
Sbjct: 316 LGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATLH 375

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D I  L            ++V D V+++RAG+VIP++V +++++R  +A    FP+ C
Sbjct: 376 NQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTSC 424

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V +          A  RCT GL C+AQ+ E +KHF SR A +++GLG + ++  
Sbjct: 425 PVCDSAVAKPEGE------AVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQL 478

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     I   AD+F L   Q ++  ++      G  S TNL + + + ++ +L +FI
Sbjct: 479 VDEK----LINTXADLFKLTEIQVSTIDRM------GKKSATNLINGLEQAKSTTLAKFI 528

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIR VG   A +LA ++ +          + A  +     L  V  VG+++A+ I+ 
Sbjct: 529 YGLGIREVGEATAANLANHFYT----------LAAIESASLEDLQNVSDVGEVVAKNIIN 578

Query: 615 FYQNPRNICAVEALLKEVS-PSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F++   N+  V  L + +  P+I      E  ++ +I     V TGTL ++ R +A+  +
Sbjct: 579 FFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQI----FVLTGTLTQMGRTEAKTAL 634

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             LGA VS  +S+ T  ++ GD  GSKL KAQ LG+ ++ E+  + LL ++  T+
Sbjct: 635 QSLGAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689


>gi|269836970|ref|YP_003319198.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745]
 gi|269786233|gb|ACZ38376.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745]
          Length = 680

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 259/714 (36%), Positives = 404/714 (56%), Gaps = 62/714 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L + I  ++  YY   +P + D+EYDAL      +  A P+L     P+ P  +
Sbjct: 7   QERIAELRKLIERYNYEYYVLDQPSVSDAEYDALMNELRELEAAHPELI---TPDSPTQR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   + +   V H IP LSL   ++ ++LR++  R+YR   ++D   I F  EPKIDG+
Sbjct: 64  VGAPPSSAFGTVRHEIPMLSLANAFSEQELRQWAERVYRLAGRRD---IEFVTEPKIDGS 120

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYI 193
            ++I Y  G +   A RGDG  GEDV+A IR +  +P  L     +++PE++EVRGE+Y+
Sbjct: 121 AVSILYRNGVYERGATRGDGIQGEDVTANIRTVRNVPLRLHDVDGVHVPEVLEVRGEIYM 180

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
            K+DF ALN      G   +ANPRNAA+G LR+L+P    +R L F+   +G    I   
Sbjct: 181 RKSDFEALNRRRGEAGEILFANPRNAAAGSLRQLDPNVTASRPLRFYAWDVG----IIEG 236

Query: 253 GQYEM-----LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           GQ+       L  +R LG P         T   + +      S+R  L ++IDG+V KV+
Sbjct: 237 GQHNGTHTANLDLLRTLGIPTAPDYHVWQTIDEVWAECERWLSLRDELDFEIDGVVVKVN 296

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  +R PRW I++KF   Q +T L DI++ +GRTG L PVA L+PV IGG +
Sbjct: 297 DEDLQAELGTVSREPRWAIAYKFPAIQKTTILRDIEVNVGRTGSLNPVAILDPVEIGGVV 356

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHNED I+ L           D+ +GDRV+V+R+G+VIPK+V ++V+ R  D +P
Sbjct: 357 VRRATLHNEDEIRRL-----------DLLIGDRVVVQRSGDVIPKIVAVVVSARDGDERP 405

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F+ P  CP+C +  VR      G+++   R     +C A+  E ++HFVSR A +IEG G
Sbjct: 406 FTMPDHCPVCGAAAVR----LEGEVM---RYCVNASCPARLREAVRHFVSRGAMDIEGFG 458

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +  + F    D    I   ADI+ L         +I  + GFGD  + NL  SI   + 
Sbjct: 459 SRLAEQFV---DLGL-IHSVADIYEL------DWERIRQLEGFGDKRIANLQASIEASKE 508

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R + +LGIRHVG   AR LA+++ S       ++ I A + ++   L  +P  G +
Sbjct: 509 RPLSRLLHALGIRHVGERNARLLAQHFNS-------MDRIAAASIEE---LQGIPGFGRV 558

Query: 608 IAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +A+A+ +F++ P+N+  ++ L      ++ + G     V   +  K +V TG L+ + R 
Sbjct: 559 VAEAVYDFFREPQNLALIQRLRAHGLRMTEADG-DTAPVDGRLAGKTVVLTGRLESMTRE 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +AQE + ++GA V++ +SRKTD +IVG +PGSK ++A++LGV+I++E+ FL LL
Sbjct: 618 QAQEALRRMGATVTSSVSRKTDFVIVGQDPGSKADRARELGVQILDEQAFLALL 671


>gi|262369277|ref|ZP_06062605.1| DNA ligase [Acinetobacter johnsonii SH046]
 gi|262315345|gb|EEY96384.1| DNA ligase [Acinetobacter johnsonii SH046]
          Length = 679

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 259/715 (36%), Positives = 397/715 (55%), Gaps = 61/715 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L Q ++ H+  YY   +P I DSEYD L  +  A+   +P+  +   P+ P+NK+G
Sbjct: 10  QMRQLIQILAQHNHAYYVMDQPTIADSEYDQLFHQLKALEEQYPEYIQ---PDSPINKVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+       VTH +P LSL  ++N E+L  F  R     ++  + +I + +E K DG  I
Sbjct: 67  GKPLAKFTSVTHVVPMLSLGNVFNQEELFAFARRAE---ERLPNQTIQYDVELKFDGLAI 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVYISKN 196
           ++ YE+G  V    RGDG +GED++  ++ I  +P+VLS +   +P ++EVRGEV + K 
Sbjct: 124 SLWYEQGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSTDQGEVPTLLEVRGEVLMPKA 183

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A G K +ANPRNAA+G LR+L+P    +R L F+ +G+ +      +   
Sbjct: 184 GFEKLNAENEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPNHGQSTM 243

Query: 256 -EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ ++  GF V       ++   + + Y ++ + R  L  +IDG+V KV+    Q+Q
Sbjct: 244 SESLEWLQQFGFAVGERHFVCDSIQEVQAVYEQINAERPQLSVEIDGMVIKVNSLKQQQQ 303

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R PRW  ++KF    A T + +ID Q+GRTG LTPVARL PV +GG  ++N TLH
Sbjct: 304 LGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNVTLH 363

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I  L           D+R+GD V V R+G+VIPKV  +    R  DA     PS C
Sbjct: 364 NIGEIHRL-----------DVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDATEVELPSQC 412

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++  
Sbjct: 413 PVCESPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESL 466

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     ++  ADI+ L   ++    K+  I   G+ SV NL DSI   +  +L  FI
Sbjct: 467 LHLD----LLKDVADIYHLHEHRE----KLLTIEKMGEKSVQNLIDSIENSKKTTLAAFI 518

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   AR LA  +       Q ++ +   + D   +L + P VGDI A+ IV+
Sbjct: 519 YALGIRGVGETTARMLANTF-------QTLDALRVADID---ALKKTPDVGDITAEWIVD 568

Query: 615 FYQNPRNICAVEALLKE-------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           F+Q P N+  ++ LL         V+PS           +  +  V TGTL  + R +A 
Sbjct: 569 FFQAPHNLEVLDRLLAAGIHWDAPVAPS--------RQPLNGESWVVTGTLSTMGRDEAT 620

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + +  LGA VS  +S KT  ++ G+  GSKL+KA++LG+ ++NE +F+ L++ Y 
Sbjct: 621 QLLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIAVINEAEFIQLMKDYG 675


>gi|328473436|gb|EGF44284.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus 10329]
          Length = 670

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/710 (35%), Positives = 394/710 (55%), Gaps = 49/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL   + P+  
Sbjct: 3   ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133
             ++GG+      +VTH +P LSL+  ++  +L  F  R      +    SI  +  EPK
Sbjct: 61  -QRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---DRIGGESIKQYCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++  +R I  IP ++   + P  +EVRGEV+
Sbjct: 117 LDGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-F 250
           + K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G       
Sbjct: 177 MPKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   YE   +++  G P+    ++ ++   + +YY ++   R  LPY+IDG+V K+D+ +
Sbjct: 237 AASHYERFLQIKSWGLPMCQETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 297 VQDRLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV +I   R   A+   F
Sbjct: 357 ATLHNADEIERL-----------QVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ + LKHFVSR A +++GLG + 
Sbjct: 406 PTQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKV 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L      S   +  +   G  S  N+ +++ K +  +L
Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGIR VG   A +LA+++ S +                   LI V  +G ++A+
Sbjct: 510 PRFLYSLGIREVGEATAANLAQHFKSLEAIQAATEE----------QLIAVQDIGVVVAK 559

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            I  F++  +N   V+ LL +    P +   E+     +E K +V TGTL ++ R +A+E
Sbjct: 560 HITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKE 619

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+
Sbjct: 620 ALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELI 669


>gi|153838362|ref|ZP_01991029.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
 gi|149748221|gb|EDM59080.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
          Length = 670

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/710 (35%), Positives = 395/710 (55%), Gaps = 49/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL   + P+  
Sbjct: 3   ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133
             ++GG+      +VTH +P LSL+  ++  +L  F  R      +    SI  +  EPK
Sbjct: 61  -QRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---DRIGGESIKQYCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++  +R I  IP ++   + P  +EVRGEV+
Sbjct: 117 LDGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-F 250
           + K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G       
Sbjct: 177 MPKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   YE   +++  G P+    ++ ++   + +YY ++   R  LPY+IDG+V K+D+ +
Sbjct: 237 AASHYERFLQIKSWGLPMCPETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 297 VQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV +I   R   A+   F
Sbjct: 357 ATLHNADEIERL-----------QVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ + LKHFVSR A +++GLG + 
Sbjct: 406 PTQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKV 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L      S   +  +   G  S  N+ +++ K +  +L
Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGIR VG   A +LA+++ S +                   LI V  +G ++A+
Sbjct: 510 PRFLYSLGIREVGEATAANLAQHFKSLEAIQAATEE----------QLIAVQDIGVVVAK 559

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            I  F++  +N   V+ LL +    P +   E+     +E K +V TGTL ++ R +A+E
Sbjct: 560 HITTFFEEEKNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKE 619

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+
Sbjct: 620 ALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELI 669


>gi|319897423|ref|YP_004135620.1| DNA ligase, nad(+)-dependent [Haemophilus influenzae F3031]
 gi|317432929|emb|CBY81295.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3031]
          Length = 679

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 260/715 (36%), Positives = 412/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 14  QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 70

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 71  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVNRI-------EDRLILLPKPLTFCCE 123

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G+   AA RG+G +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 124 PKLDGLAVSILYVNGELTQAATRGNGTAGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 183

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 184 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 242

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 243 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 303 DIGLQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 363 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 410

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 411 PIIFPTNCPVCDSQIIR----IEGETVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 464

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+   +
Sbjct: 465 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 514

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+
Sbjct: 515 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 564

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 565 VVANRIFIFWREAHNVAVVEDLITQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 619

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  G+KL KAQ+L + ++ EE+FL
Sbjct: 620 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGAKLAKAQELNITVLTEEEFL 674


>gi|91225892|ref|ZP_01260861.1| DNA ligase [Vibrio alginolyticus 12G01]
 gi|91189542|gb|EAS75818.1| DNA ligase [Vibrio alginolyticus 12G01]
          Length = 670

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/711 (35%), Positives = 395/711 (55%), Gaps = 51/711 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL   + P+  
Sbjct: 3   ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133
             ++GG+   +  +VTH +P LSL+  ++  +L  F  R     ++    S+  +  EPK
Sbjct: 61  -QRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---ERVGSLSVKEYCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  N  P  +EVRGEV+
Sbjct: 117 LDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-F 250
           + K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G       
Sbjct: 177 MPKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGAEL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   YE   +++  G P+    ++  +   + +YY ++   R  LPY+IDG+V K+D+ +
Sbjct: 237 AASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 297 VQERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD V+++RAG+VIP+VV +I   R   A+   F
Sbjct: 357 ATLHNADEIERL-----------QVKIGDHVVIRRAGDVIPQVVSVIKERRPETARDIVF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RC GGL C AQ+ + LKHFVSR A +++GLG + 
Sbjct: 406 PTQCPVCGSHVERIEGE------AVTRCMGGLVCQAQRKQALKHFVSRKALDVDGLGDKV 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG-FGDVSVTNLYDSINKRRNIS 549
           ++     E     ++ PAD+F L       +  I  +L   G  S  N+ +++ K +  +
Sbjct: 460 IEQLVDRE----MVKTPADLFKL-------SAGILTVLDRMGPKSAQNIVNALEKSKETT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF++SLGIR VG   A +LA ++            + A  N     LI V  +G ++A
Sbjct: 509 LPRFLYSLGIREVGEATAANLAMHF----------KTLGAIQNATEEQLIEVQDIGAVVA 558

Query: 610 QAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           Q I  F+   +N   V+ LL++    P I   E+     +E K +V TGTL ++ R +A+
Sbjct: 559 QHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTEAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+
Sbjct: 619 EALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELM 669


>gi|222055066|ref|YP_002537428.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32]
 gi|254781339|sp|B9M861|DNLJ_GEOSF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221564355|gb|ACM20327.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32]
          Length = 669

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/706 (35%), Positives = 388/706 (54%), Gaps = 46/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A+  +  L +EI+ H+  YY   +P I D+EYD L R    +   FPDL  ++ P     
Sbjct: 6   AQLRIQELHREINRHNYLYYVEDRPEITDAEYDLLLRELQQLEKEFPDLVTADSPT---Q 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G        +V+H +P LSLE  +N  ++R F  RI R+        I +  EPK+DG
Sbjct: 63  RVGAAPLDKFNQVSHRLPMLSLENAFNEGEMRDFDERIKRYLGLPMAKEIEYVCEPKMDG 122

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             + + YE+G   + + RGDG+ GEDV+  ++ + +IP R+     P ++EVRGEVY+  
Sbjct: 123 LAVELIYEEGSLTFGSTRGDGYVGEDVTQNLKTVKSIPLRLHCSPPPSLVEVRGEVYLGL 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN +    G  P+ANPRNAA+G LR+L+P     R L+ F +  G         Q
Sbjct: 183 APFQKLNMDREEAGLPPFANPRNAAAGSLRQLDPRITARRPLSIFCYAPGLVEGYEFTSQ 242

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +ML  +   G PVN  +++      +++YY E+   R +LPY+IDG+V KVD F LQ+ 
Sbjct: 243 SQMLATLPQWGLPVNPLIKKVAGIDAVLAYYREIGETRESLPYEIDGVVIKVDSFDLQRD 302

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LGE+ RSPRW I+ KF  +QA T + DI  Q+GRTG++TPVA L+PV + G +++ ATLH
Sbjct: 303 LGEKTRSPRWAIAWKFPPRQAVTVVEDIVPQVGRTGVITPVAHLKPVEVSGVMVSRATLH 362

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N + ++            +DIR GD V+V+RAG+VIP VV ++  +R   A+  + P+ C
Sbjct: 363 NWEEME-----------KKDIRKGDTVVVERAGDVIPAVVKVMTEKRLEGAELLAVPAAC 411

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S +V+      G++  A RC  GL C AQ  E + HF SR A +IEG+G + ++  
Sbjct: 412 PECGSEIVK----IPGEV--AIRCL-GLTCPAQIRETIIHFASRHAMDIEGMGDKYVEQL 464

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     ++  AD++ L ++      ++      GD    NL ++I   ++  L RFI
Sbjct: 465 LRLE----LVKTVADLYYLTKKDFMRFERM------GDKLAENLLNAIEASKHRELSRFI 514

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIRHVG   A+ LA  + S ++  +               L+ +  VG  +AQ++  
Sbjct: 515 FALGIRHVGEHTAKLLASAFGSVEHLEKATEE----------ELLSIREVGPQVAQSVRT 564

Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F++NP N   +E +    V P++   EK +      K  VFTG L +  R  A+  V   
Sbjct: 565 FFRNPANREVIERMFAAGVRPAV--EEKRLGGRFTGKTFVFTGALTRFTRDDAKNMVENE 622

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   +  +S+KTD ++ G   GSKL+KA+QLGV ++ E++FL +L+
Sbjct: 623 GGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVNVLTEDEFLKMLE 668


>gi|327438552|dbj|BAK14917.1| NAD-dependent DNA ligase [Solibacillus silvestris StLB046]
          Length = 665

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 260/706 (36%), Positives = 398/706 (56%), Gaps = 60/706 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ   EL+ L  E  Y    YY   KP++ DS YD L     A+  A P+      P+ 
Sbjct: 4   IEQRIAELNKLLHEYGY---AYYVLDKPVVEDSVYDQLLHELIALEEANPEFIY---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KVTH    LSL   +N EDLR F  +I +   K    +  +  E K
Sbjct: 58  PTQRVGGMVLEGFKKVTHETAMLSLSNAFNEEDLRDFDRKIEQAIGK----NYSYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++RYE G FV  A RGDG  GED++A ++ I  IP  L LN P  +EVRGE Y+
Sbjct: 114 IDGLAISLRYENGVFVQGATRGDGTVGEDITANLKTIRAIP--LRLNEPVTLEVRGEAYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA- 251
            K  F  LN+     G + +ANPRNAA+G LR+L+P    +R L+ F++ +G   E +  
Sbjct: 172 PKKSFEKLNERRAENGEELFANPRNAAAGSLRQLDPKIAASRNLSTFIYAVGGDGESYGI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G +EML+ +  LGFP N       T   ++++  +    R  L Y+IDG+V KV+ ++ 
Sbjct: 232 DGHWEMLKYLEELGFPSNKEREYCETIEDVLAFIEKWTEARPNLSYEIDGIVIKVNRYAH 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A L PV + G  ++ A
Sbjct: 292 QDELGFTAKSPRWAIAYKFPAEEVITKLLDIELTVGRTGVITPTAILTPVLVAGTTVSRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +DIR+ D V+V++AG++IP++V +++ +R  DA P+  P
Sbjct: 352 SLHNEDLIR-----------EKDIRIDDTVIVRKAGDIIPQIVGVVLEQRPDDAVPYKMP 400

Query: 432 SFCPICQSRVVR-DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           + CP C   VVR D +        A RC     C AQ  E +KHFVSR+A NI+GLG++ 
Sbjct: 401 THCPACDEEVVRIDTD-------VALRCVNP-QCPAQIAEGVKHFVSRNAMNIDGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   +       I+  A ++ L   Q      + N+   G  S TNL +++ + ++ SL
Sbjct: 453 VEQLLRE----GYIQDVAGLYELTVEQ------LINLERMGQKSATNLVEALIQSKDNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVG + A+ LA ++       + I+ ++    +D   L  +  +GD +A+
Sbjct: 503 ERLLFGLGIRHVGEKAAKILAAHF-------ETIDALMVATEED---LKDIHEIGDKMAE 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           +IV ++ N +    +E  LK    ++    K +  E        K +V TG LQ++ R++
Sbjct: 553 SIVAYFANEQVQQLIER-LKGFGLNMSYKGKKIVVEAGANPFAGKTIVLTGKLQQLTRNE 611

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           A+  + QLG  V+  +S+KTD++IVG++ GSKLEKAQ LG++I +E
Sbjct: 612 AKAKIEQLGGTVAGSVSKKTDLVIVGEDAGSKLEKAQSLGIEIWDE 657


>gi|84393803|ref|ZP_00992550.1| DNA ligase [Vibrio splendidus 12B01]
 gi|84375600|gb|EAP92500.1| DNA ligase [Vibrio splendidus 12B01]
          Length = 670

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/705 (36%), Positives = 394/705 (55%), Gaps = 51/705 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           L  L + + YH   YY    P I D EYD L ++   I    P+L   + P+    ++GG
Sbjct: 9   LEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPS---QRVGG 65

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +      +VTH IP LSL+  ++ EDL  F  R+    +    N   F  EPK+DG  ++
Sbjct: 66  QPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSD--RAPMANLKTFCCEPKLDGLAVS 123

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           + Y  G  V AA RGDG +GE+++  +R I +IP ++     PE IEVRGEV++ K  F 
Sbjct: 124 LLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKAGFD 183

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYE 256
            LN+  +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G       +   Y+
Sbjct: 184 KLNEMALKKGDKVFVNPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVVQGAELSNSHYQ 242

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
              +++  G P+    +Q ++   + +YY ++ + R  L Y+IDG+V KVD+ + Q  LG
Sbjct: 243 RFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDALAYEIDGVVIKVDDIAAQVTLG 302

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  ++NATLHN 
Sbjct: 303 FVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNA 362

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L            ++VGD V+++RAG+VIP++V ++++ R   A+   FP  CP+
Sbjct: 363 DEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVLDRRPETARDIVFPDACPV 411

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++GLG + ++    
Sbjct: 412 CNSAVER----VEGEAVA--RCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVIEQLVD 465

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     +  PAD+F L      S   I  +   G  S  N+  ++NK ++ +L RF++S
Sbjct: 466 RE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYS 515

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +LA+++ +      E+     H       L+ V  +GDI+A  +  F+
Sbjct: 516 LGIREVGEATAMNLAQHFKTL-----ELVQAATHEQ-----LVEVSDIGDIVASHLTSFF 565

Query: 617 QNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
              +N   VE LL E+    P+I     +    +E K +V TG+L K+ R +A+  +  L
Sbjct: 566 SQEKNRAVVEQLL-ELGVNWPTIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKAALQAL 624

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           GA V+  +S+KTDI+  G+  GSKL KAQ LG++I  EE  + L+
Sbjct: 625 GAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669


>gi|319793880|ref|YP_004155520.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
 gi|315596343|gb|ADU37409.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
          Length = 694

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 256/719 (35%), Positives = 386/719 (53%), Gaps = 66/719 (9%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +++  H   YY    P + D+EYD L +R  A+   FP+L     P+ P  ++GG++ 
Sbjct: 14  LSEQLHKHAHLYYVLDAPELPDAEYDKLFQRLQALETEFPEL---RTPDSPTQRVGGKVL 70

Query: 84  LSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMIT 140
               KV H +P LS+    +I       F  R+ +     +D   + +  E K DG  + 
Sbjct: 71  DGFTKVRHKVPMLSIRTETDITPGGASAFDARVRKELGLAEDGPQVSYVCELKFDGLAMN 130

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           +RYE G  V AA RGDG  GEDV+  IR +  IP  LS   P ++EVRGEVY+ + DF A
Sbjct: 131 LRYEDGVLVQAATRGDGEVGEDVTQNIRTVREIPLRLSGKAPPVVEVRGEVYMKRADFDA 190

Query: 201 LND---EMIAVGRKP---YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           LN+   E IA G+K    + NPRNAA+G +R+L+P     R L+FF +GLG+ +     G
Sbjct: 191 LNERQREKIAAGQKNEKIFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGLGEVTPAAEGG 250

Query: 254 -----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ LQ+    GFPV     +A     +++++  +   R  LPYDIDG+VYKVD 
Sbjct: 251 PDCPTQFDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYDIDGVVYKVDS 310

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ+QLG  +R PRW ++HK+  ++  T +L I+IQ+GRTG LTPVA+L PV +GG  +
Sbjct: 311 IELQRQLGFVSREPRWAVAHKYPAQEQLTDVLGIEIQVGRTGKLTPVAKLAPVFVGGVTV 370

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV-------NER 421
           TNATLHNED  +            +D+RVGD V+V+RAG+VIP+VV ++         ER
Sbjct: 371 TNATLHNEDEAR-----------RKDVRVGDTVIVRRAGDVIPEVVGVVPESLAKPEGER 419

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P    F+ P  CP+C S  VR+           +RCTGGL C+AQ+ E + HF +R A 
Sbjct: 420 GP---VFTMPHKCPVCGSEAVREEEE------VDYRCTGGLFCAAQRKEAILHFAARRAV 470

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +++GLG + ++        A  IR   D++ L        T +  +    + S  NL D+
Sbjct: 471 DVDGLGDRLVEQLVD----ANLIRTLPDLYKL------GFTTLAGLDRMAEKSAKNLVDA 520

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   +  +L RF+F LGIRHVG   A+ LAK++             +   ND        
Sbjct: 521 LEASKKTTLPRFLFGLGIRHVGESTAKDLAKHFGKLDAIMDATEQQLLEVND-------- 572

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
             VG ++AQ++  F+  P N   VE L    ++   G         +     V TGTL  
Sbjct: 573 --VGPVVAQSLRTFFDQPHNREVVEQLRACGLTWEEGEPAARAPKPLAGLTFVITGTLPT 630

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A++ +   GA V+  +S+KT  ++ G+  GSKL+KA+++GV +++E + L +L+
Sbjct: 631 LGRDEAKDKLEAAGAKVAGSVSKKTHYLVAGEEAGSKLDKAREIGVAVIDEARMLEILE 689


>gi|33597876|ref|NP_885519.1| DNA ligase [Bordetella parapertussis 12822]
 gi|81425567|sp|Q7W0T4|DNLJ_BORPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33574305|emb|CAE38638.1| DNA ligase [Bordetella parapertussis]
          Length = 696

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/729 (36%), Positives = 397/729 (54%), Gaps = 71/729 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L  EI  H+  YY +  P + D+EYDAL R   A+    P+L     P+ P  +
Sbjct: 9   QQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPDSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEPK 133
           +G         V H++P LSL   ++ ED+R F  R+    +       D  + +  E K
Sbjct: 66  VGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I++ YE+G+   AA RGDG +GEDV+A IR I  +P  L    P ++EVRGEV +
Sbjct: 126 LDGLAISLCYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLH-GAPRVLEVRGEVLM 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF------VHGLGK- 245
           ++ +F  LN    A G K + NPRNAA+G LR+L+P     R L FF      VHGL + 
Sbjct: 185 NRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEG 244

Query: 246 --------------TSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKS 290
                          S +       ML  +  LG PVN     +     G++++Y  +  
Sbjct: 245 MPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGK 304

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
           +R+ LPYDIDG+VYKVD    Q+ LG  AR+PR+ ++HKF  ++A T+LL I++Q+GRTG
Sbjct: 305 LRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTG 364

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVARL PV +GG  +TNATLHNED I+            +D+R+GD V+V+RAG+VI
Sbjct: 365 AITPVARLAPVFVGGVTVTNATLHNEDEIR-----------RKDVRIGDTVIVRRAGDVI 413

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+VV  ++ +R  DA+ F   + CPIC S + R      G+ +A  RCTGGL C+AQ+ +
Sbjct: 414 PEVVGPVLEKRPADAREFVMLTACPICGSAIER----PEGEAIA--RCTGGLFCAAQRKQ 467

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            L H   R A +IEGLG++ +D    ++     ++  ADI++L      +  ++  +   
Sbjct: 468 TLLHAAGRKALDIEGLGEKLIDQLVDAD----RVKSLADIYSL------TAFELAALERM 517

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           G  S  NL  +I++ R  +L R +F+LGIRHVG   AR +A+++ S +            
Sbjct: 518 GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASEE---- 573

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIEN 649
                 +L+ VP VG ++A +I  F+  P N   VE L ++ V P      +  S  +  
Sbjct: 574 ------ALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS--LAG 625

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K  V TGT+    R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LGV ++
Sbjct: 626 KTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVL 685

Query: 710 NEEQFLFLL 718
           +E+    LL
Sbjct: 686 DEDGLKALL 694


>gi|299535244|ref|ZP_07048568.1| DNA ligase [Lysinibacillus fusiformis ZC1]
 gi|298729365|gb|EFI69916.1| DNA ligase [Lysinibacillus fusiformis ZC1]
          Length = 667

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 256/721 (35%), Positives = 403/721 (55%), Gaps = 71/721 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ   EL+ L  E  Y    YY   KP++ DS YD L +   A+  A P L     P+ 
Sbjct: 4   IEQRIAELNKLLHEYGY---AYYVLDKPVVADSVYDQLLQELIALEEANPSLIY---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KVTH  P LSL   +N  DLR+F  ++    ++   +   +  E K
Sbjct: 58  PTQRVGGAVVEGFKKVTHDYPMLSLSNAFNEADLREFDRKV----RQAIGDQFSYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+++YE G FV  A RGDG  GED++A ++ I  IP  L L  P  IEVRGE Y+
Sbjct: 114 IDGLAISLKYENGMFVQGATRGDGVVGEDITANLKTIRAIP--LRLKEPITIEVRGEAYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA- 251
            K  F  LN +    G + +ANPRNAA+G LR+L+P    +R L+ F++ +G   E++  
Sbjct: 172 PKKSFENLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G  EML  +  LGFP N   ++ +T   ++++       R  L Y+IDG+V KVD ++ 
Sbjct: 232 DGHAEMLDYLEGLGFPSNKERQRCSTIEEVMAFIEHWTENRPKLAYEIDGIVIKVDRYAQ 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  A+SPRW I++KF  ++  T LLDID+ +GRTG++TP A L PV + G  +  A
Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +DIR+GD V++++AG++IP+VV +++ +R  D+ PF  P
Sbjct: 352 SLHNEDLIR-----------DKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPEDSVPFVMP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S ++R      G++  A RC    AC AQ  E +K+FVSR+A NI+GLG + +
Sbjct: 401 KNCPVCDSELIR----IEGEV--ALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +++     I   +D++ L   Q     ++      G+ S TNL ++I   +  S+E
Sbjct: 454 EQLLRAD----LIHDVSDLYHLTVEQLVELERM------GEKSATNLVNAIQASKENSME 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  LGIRHVG + A+ +++ + S +        ++A   +    L+ +  +GD +A +
Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEEFGSME-------AVMAATEE---QLVAIYEIGDKMASS 553

Query: 612 IVEFYQNPRNICAVEALL----------KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           +VE++ N      +E L           K+V  +IG       S    K +V TG L+++
Sbjct: 554 LVEYFSNEDARAVIERLADAGVNMTYKGKKVEVAIG------DSPFAGKTIVLTGKLEQL 607

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R++A+  + +LG  V+  +S+KTD++I G + GSKL KA+QLG+++  E+    L++Q 
Sbjct: 608 TRNEAKAKIEELGGTVTGSVSKKTDLVIAGADAGSKLTKAEQLGIEVWTEDN---LIEQL 664

Query: 722 N 722
           N
Sbjct: 665 N 665


>gi|312173113|emb|CBX81368.1| DNA ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 670

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 250/715 (34%), Positives = 410/715 (57%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +   +P+L  S+ P  
Sbjct: 1   MESLQDKITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTSDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+  ++ E    F  R+    +  DD  I F  E K
Sbjct: 60  --QRVGAAPLSAFGQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YEKG+ V AA RGDG +GED++A +R I  IP  LS + IPE +EVRGEV+
Sbjct: 116 LDGLAVSLLYEKGQLVRAATRGDGTTGEDITANVRTIRAIPLRLSGDSIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           +    F  +N +  + G+K +ANPRNAA+G LR+L+P     R L FF +GLG  +  E+
Sbjct: 176 MPLAGFEQMNQQARSCGQKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGLGLLEGGEM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +     LQ+ +  G PV++ VR +++   ++ +Y+++++ R TL +DIDG+V KVD  
Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRVRLSHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG  AR+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 ELQEQLGFVARAPRWAIAFKFPAQEQITTVRDVEFQVGRTGAMTPVARLEPVLVAGVMVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +++GDRV+++RAG+VIP+V+ ++  E   DA+  +
Sbjct: 355 NATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVV--ETGDDAREIA 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CPIC S    D+    G++VA  RCTGGL C AQ+   LKHFVSR A +I+G+G++
Sbjct: 402 FPTHCPICGS----DIERVEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGEK 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     E     ++ PA++F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 456 IIDQLVDKE----YVKNPAELFEL------TAGKLTGLDRMGPKSAQNVVNALAKAKQTT 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGI  VG   A +LA ++ + +          A    D  +L+ V  VG ++A
Sbjct: 506 FARFLYALGISEVGEATAANLAAHFGTLE----------ALMTADLDALMAVQDVGKVVA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F     N   +  L+ +   +    +      + S    K +V TG+L  + R +
Sbjct: 556 SHVRNFLDEESNREIIRLLVDKAGVNWPQVVVVKAGEIDSPFAGKTVVLTGSLSILSRDE 615

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E++ + LL +
Sbjct: 616 AKDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMIRLLGE 670


>gi|165923886|ref|ZP_02219718.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334]
 gi|165916671|gb|EDR35275.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334]
          Length = 670

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 260/711 (36%), Positives = 411/711 (57%), Gaps = 58/711 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L QEI+ H+  YY  S+P I DS YD L      +   +P+   +  P+ P  +
Sbjct: 8   QKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSSPTQR 64

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G E  L +F+ V H IP LSL+ +++ + LR F  RI +  + K D    +  EPK+DG
Sbjct: 65  VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 121

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV + +
Sbjct: 122 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252
             F   N E    G K +ANPRNAASG LR+L+P     R L F+ +  GL K  + F K
Sbjct: 182 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   +Q
Sbjct: 241 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++NAT
Sbjct: 301 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D         ++ R  +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    PS
Sbjct: 361 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C + V++      G+ VA  RC GGL C AQ  E +KHF SR A +IEGLG + ++
Sbjct: 410 RCPVCHAEVIKP----EGEAVA--RCMGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F +        ++  DI  + + ++++ T +  +   G+ S  NL  +I K +  +L R
Sbjct: 464 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG   AR+LA+++        E++ ++  + +   +L  +  +G ++A+ I
Sbjct: 514 FLYALGIRGVGDTTARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVVAENI 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668
             F+    N   +  L+      +G H   EK  V SEI  K  V TG L+ + R +A+E
Sbjct: 564 HAFFHQKHNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 619 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669


>gi|222099565|ref|YP_002534133.1| DNA ligase [Thermotoga neapolitana DSM 4359]
 gi|254781438|sp|B9K734|DNLJ_THENN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221571955|gb|ACM22767.1| DNA ligase [Thermotoga neapolitana DSM 4359]
          Length = 693

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 261/704 (37%), Positives = 396/704 (56%), Gaps = 51/704 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E+  L +EI YH+  YY  + P+I D EYD L RR   +   +P+L     P+ P  ++
Sbjct: 17  EEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELV---TPDSPTQRV 73

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++      V HS+P LSL+  +N E++ +F  R+ +  Q   ++ + +  E KIDG  
Sbjct: 74  GGKVLEGFKTVKHSVPMLSLDNTYNEEEIIEFDKRVKKTLQ---ESEVEYVAELKIDGVS 130

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I +RYE G+FV  A RGDG  GEDVS  ++ I ++P  L L  P  IEVRGE+Y+  ++F
Sbjct: 131 IALRYENGRFVLGATRGDGVEGEDVSENVKTIRSVP--LRLRKPLTIEVRGEIYMPVDEF 188

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN+E    G  P+ANPRNAA+G LR+LN   + +R L+ F++ +        K Q+E 
Sbjct: 189 KRLNEEREEEGLPPFANPRNAAAGTLRQLNTALVASRRLDSFIYYVVHPENYGLKTQWEA 248

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ ++ +GF VN   R       ++ Y+ E K  +  L Y +DG+V KV+ F  QK LGE
Sbjct: 249 LQFLKEIGFKVNPHSRLCKNIQEVIEYWREWKERKRELDYWVDGVVVKVNRFDFQKVLGE 308

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +++PRW I+ KF  +QA TR+LD+ IQ+GRTG+LTPVA LEPV + G ++  A+LHN +
Sbjct: 309 TSKAPRWAIAFKFPAEQARTRILDVTIQVGRTGVLTPVAELEPVQLAGTIVKRASLHNFE 368

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI+            +DIR+GD V V++AG +IP++V  I   R    +    P  CP+C
Sbjct: 369 YIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGSEKEIKPPQSCPVC 417

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
             +V + L+P       A RC     C A+    L+ FVSR+A +IEGLG++ +D    S
Sbjct: 418 GGKVGK-LSPDE----VAIRCLNP-HCPAKLKRALRTFVSREALDIEGLGEKIIDRLVDS 471

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADIF L     T     +   G G  ++  +   I + +   L + I  L
Sbjct: 472 ----GLVKDIADIFYL-----TPFDLAQLGPGIGQRTIAKILQEIEEAKKRPLHKLITGL 522

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI  VG + A+ LA+++ S +  A+            + +L  +P +G  IA++IVE+++
Sbjct: 523 GIPMVGQKTAKILAEHFKSLEAIAEA----------SYETLKDIPGIGPEIARSIVEYFR 572

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQRHKAQEYVTQLGA 675
           NP+    +E L K     +   EK V  ++  K L F  TGTL+   R +  E++ +LGA
Sbjct: 573 NPKTREIIEKLKK---AGVKLEEKTVKYDV-LKGLTFAVTGTLKNFTREEIIEFLERLGA 628

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V   +S+ TD +IVG+NPGSK EKA+ L VK M+EE+FL  ++
Sbjct: 629 RVVNSVSKNTDYLIVGENPGSKYEKAKALKVKTMSEEEFLRFVE 672


>gi|120598462|ref|YP_963036.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1]
 gi|166216244|sp|A1RII7|DNLJ_SHESW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120558555|gb|ABM24482.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1]
          Length = 685

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/718 (35%), Positives = 391/718 (54%), Gaps = 61/718 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A++ + +L Q ++ H+  YY    P I DSEYD L +    +   FP    ++ P
Sbjct: 14  MSPENAQQVMQALSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVADSP 73

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++GG       ++TH  P LSL+  +   D   F  R+           + F  E
Sbjct: 74  T---QRVGGLALAKFDQITHLKPMLSLDNAFGEADFSAFHKRV-----TDKVGEVSFCCE 125

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVRGE
Sbjct: 126 PKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRGE 185

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KT 246
            ++ K  F ALN+   A   K + NPRNAA+G LR+L+     +R L F+ + LG     
Sbjct: 186 AFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPD 245

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S    K  YE LQ+++  G PV+N ++       +  YY ++ + RS LP++IDG+V KV
Sbjct: 246 SYSLGKTHYEQLQQLKSWGLPVSNEIKVCEELDQVFDYYKDILTRRSDLPFEIDGVVMKV 305

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG 
Sbjct: 306 NDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGV 365

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I+ L            I++GD V+++RAG+VIP++V I+   R   A 
Sbjct: 366 TVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPETAT 414

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP  CP+C S V R      G+ VA  RC+GGL C AQ+ E +KHF SR A +I+G+
Sbjct: 415 DIVFPHNCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDIDGM 468

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I   +
Sbjct: 469 GDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIEAAK 518

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF+++LGIR VG   A +LA ++ S    A  +  +          L  V  VG 
Sbjct: 519 TTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTAVEDVGV 568

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGTLQK 660
           ++AQ +  F+  P N+  ++AL+     + G H   + +       ++ +  V TGTL +
Sbjct: 569 VVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQ 623

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++EE  L L 
Sbjct: 624 LNRNDAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLALF 681


>gi|319426762|gb|ADV54836.1| DNA ligase, NAD-dependent [Shewanella putrefaciens 200]
          Length = 685

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/718 (35%), Positives = 392/718 (54%), Gaps = 61/718 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A++ + +L Q ++ H+  YY    P I DSEYD L +    +   FP    ++ P
Sbjct: 14  MSPENAQQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQCLIKLEAQFPQFIVADSP 73

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++GG   +   ++TH  P LSL+  +   D   F  R+           + F  E
Sbjct: 74  T---QRVGGLALVKFDQITHLKPMLSLDNAFGEADFSAFHKRV-----TDKVGEVSFCCE 125

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVRGE
Sbjct: 126 PKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRGE 185

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--- 246
            ++ K  F ALN+   A   K + NPRNAA+G LR+L+     +R L F+ + LG     
Sbjct: 186 AFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPD 245

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S    K  YE LQ+++  G PV+N ++       +  YY ++ + RS LP++IDG+V KV
Sbjct: 246 SYSLGKTHYEQLQQLKSWGLPVSNEIKVCEELDQVFDYYKDILTRRSDLPFEIDGVVMKV 305

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG 
Sbjct: 306 NDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGV 365

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I+ L            I++GD V+++RAG+VIP++V I+   R   A 
Sbjct: 366 TVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPETAT 414

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP  CP+C S V R      G+ VA  RC+GGL C AQ+ E +KHF SR A +I+G+
Sbjct: 415 DIVFPHNCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDIDGM 468

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I   +
Sbjct: 469 GDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIEAAK 518

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF+++LGIR VG   A +LA ++ S    A  +  +          L  V  VG 
Sbjct: 519 TTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTAVEDVGV 568

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGTLQK 660
           ++AQ +  F+  P N+  ++AL+     + G H   + +       ++ +  V TGTL +
Sbjct: 569 VVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQ 623

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++EE  L L 
Sbjct: 624 LNRNDAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLALF 681


>gi|215918993|ref|NP_819574.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
 gi|218512010|sp|Q83DZ6|DNLJ_COXBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206583878|gb|AAO90088.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
          Length = 673

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 260/711 (36%), Positives = 411/711 (57%), Gaps = 58/711 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L QEI+ H+  YY  S+P I DS YD L    + +   +P+   +  P+ P  +
Sbjct: 11  QKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPE---TITPSSPTQR 67

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G E  L +F+ V H IP LSL+ +++ + LR F  RI +  + K D    +  EPK+DG
Sbjct: 68  VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 124

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV + +
Sbjct: 125 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 184

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252
             F   N E    G K +ANPRNAASG LR+L+P     R L F+ +  GL K  + F K
Sbjct: 185 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 243

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   +Q
Sbjct: 244 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 303

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++NAT
Sbjct: 304 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNAT 363

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D         ++ R  +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    PS
Sbjct: 364 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 412

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C + V++      G+ VA  RC GGL C AQ  E +KHF SR A +IEGLG + ++
Sbjct: 413 RCPVCHAEVIKP----EGEAVA--RCVGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 466

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F +        ++  DI  + + ++++ T +  +   G+ S  NL  +I K +  +L R
Sbjct: 467 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 516

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG   AR+LA+++        E++ ++  + +   +L  +  +G + A+ I
Sbjct: 517 FLYALGIRGVGDTTARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVAAENI 566

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668
             F+    N   +  L+      +G H   EK  V SEI  K  V TG L+ + R +A+E
Sbjct: 567 HAFFHQKNNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 622 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672


>gi|315127017|ref|YP_004069020.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
 gi|315015531|gb|ADT68869.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
          Length = 673

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 398/712 (55%), Gaps = 54/712 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++++ L   +  H+  YY    P I D+EYD L R    +    P+   ++ P     K+
Sbjct: 7   EQINHLRTTLEQHNYSYYVLDTPSIPDAEYDRLLRTLSELETQHPEFLTADSPT---QKV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG       +V H +P LSL+  +  ++   F  RI       ++  + F  EPK+DG  
Sbjct: 64  GGAALAKFEQVAHQVPMLSLDNAFGEDEFSGFNRRIKERLMSTEE--LTFCCEPKLDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           ++I Y  G  V AA RGDG +GE+++  ++ I  +P ++   + P  +EVRGEV++    
Sbjct: 122 VSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDDYPRELEVRGEVFMDSAG 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE-IFAKGQ 254
           F  LN E    G K + NPRNAA+G LR+L+ + IT  R L F+ +  G  ++    +  
Sbjct: 182 FEKLNAEAEKRGDKVFVNPRNAAAGSLRQLD-SKITAKRPLMFYAYSTGLVADGTLPEDH 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y+ L K+   G P+    +        ++YYN++ + RS L Y+IDG+V KV++ +LQ++
Sbjct: 241 YQQLAKLTDWGLPLCPETKLVEGPKAALAYYNDILTRRSELKYEIDGVVIKVNKKALQER 300

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++NATLH
Sbjct: 301 LGFVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLH 360

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            ++VGD V+++RAG+VIP++  +++ +R  DA+   FP+ C
Sbjct: 361 NADEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLEQRPSDAKEIVFPTMC 409

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC S + R      G+ VA  RCTGGL C AQ+ + +KHF SR A +I+GLG + +D  
Sbjct: 410 PICDSHIER----VEGEAVA--RCTGGLVCQAQRKQAIKHFASRKALDIDGLGDKIVDQL 463

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     I+ PAD+F L++         E++   G  S  NL  +++  +  +L +F+
Sbjct: 464 VDRE----LIKTPADLFILKQGH------FESLERMGPKSAKNLVAALDDAKTTTLAKFL 513

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +SLGIR VG   A++LA ++L+ +N    I+  I         LI V  VG+I+A+ +  
Sbjct: 514 YSLGIREVGEATAQNLANHFLTLENV---IDASIEQ-------LIEVSDVGEIVAKHVRG 563

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK----KLVFTGTLQKIQRHKAQEYV 670
           F+    N+  V  L   ++  I   +    SE E        V TGTL  + R+ A+  +
Sbjct: 564 FFTEEHNLTVVNEL---IAQGINWPQLTAPSEQEQPLAGLTYVLTGTLNTLNRNDAKARL 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            QLGA VS  +S KTD ++ G+  GSKL KAQ+LG++I+ E+  + LL+ +N
Sbjct: 621 QQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQELGIEILTEDDLITLLETHN 672


>gi|28897574|ref|NP_797179.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260878266|ref|ZP_05890621.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
 gi|260895418|ref|ZP_05903914.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
 gi|260903353|ref|ZP_05911748.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
 gi|81728289|sp|Q87RJ4|DNLJ_VIBPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28805786|dbj|BAC59063.1| DNA ligase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088617|gb|EFO38312.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
 gi|308090169|gb|EFO39864.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
 gi|308107994|gb|EFO45534.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
          Length = 670

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 252/710 (35%), Positives = 396/710 (55%), Gaps = 49/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL   + P+  
Sbjct: 3   ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPS-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133
             ++GG+      +VTH +P LSL+  ++  +L  F  R      +    SI  +  EPK
Sbjct: 61  -QRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---DRIGGESIKQYCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++  +R I  IP ++   + P  +EVRGEV+
Sbjct: 117 LDGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-F 250
           + K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G       
Sbjct: 177 MPKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   YE   +++  G P+    ++ ++   + +YY  +   R  LPY+IDG+V K+D+ +
Sbjct: 237 AASHYERFLQIKSWGLPMCPETKRVDSLADVKTYYQHILQRRDALPYEIDGVVIKIDDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 297 VQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV +I   R   A+   F
Sbjct: 357 ATLHNADEIERL-----------QVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R      G+ V   RCTGGL C AQ+ + LKHFVSR A +++GLG + 
Sbjct: 406 PTQCPVCGSHVER----IEGEAVT--RCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKV 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L      S   +  +   G  S  N+ +++ K +  +L
Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGIR VG   A +LA+++ S +                   LI V  +G ++A+
Sbjct: 510 PRFLYSLGIREVGEATAANLAQHFKSLEAIQAATEE----------QLIAVQDIGVVVAK 559

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            I  F++  +N   V+ LL +    P +   E+     +E K +V TGTL ++ R +A+E
Sbjct: 560 HITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKE 619

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+
Sbjct: 620 ALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELI 669


>gi|146293460|ref|YP_001183884.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32]
 gi|166216243|sp|A4Y802|DNLJ_SHEPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145565150|gb|ABP76085.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32]
          Length = 685

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/718 (35%), Positives = 392/718 (54%), Gaps = 61/718 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A++ + +L Q ++ H+  YY    P I DSEYD L +    +   FP    ++ P
Sbjct: 14  MSPENAQQVMQALSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVADSP 73

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++GG       ++TH  P LSL+  +   D   F  R+           + F  E
Sbjct: 74  T---QRVGGLALAKFDQITHLKPMLSLDNAFGEADFSAFHKRV-----TDKVGEVSFCCE 125

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVRGE
Sbjct: 126 PKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRGE 185

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KT 246
            ++ K  F ALN+   A   K + NPRNAA+G LR+L+     +R L F+ + LG     
Sbjct: 186 AFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPD 245

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S    K  YE LQ+++  G PV+N ++  +    +  YY ++ + RS LP++IDG+V KV
Sbjct: 246 SYSLGKTHYEQLQQLKSWGLPVSNEIKVCDELDQVFDYYKDILTRRSDLPFEIDGVVMKV 305

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG 
Sbjct: 306 NDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGV 365

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I+ L            I++GD V+++RAG+VIP++V I+   R   A 
Sbjct: 366 TVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPETAT 414

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP  CP+C S V R      G+ VA  RC+GGL C AQ+ E +KHF SR A +I+G+
Sbjct: 415 NIVFPHNCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDIDGM 468

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I   +
Sbjct: 469 GDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIEAAK 518

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF+++LGIR VG   A +LA ++ S    A  +  +          L  V  VG 
Sbjct: 519 TTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTAVEDVGV 568

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGTLQK 660
           ++AQ +  F+  P N+  ++AL+     + G H   + +       ++ +  V TGTL +
Sbjct: 569 VVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQ 623

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++EE  L L 
Sbjct: 624 LNRNDAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLALF 681


>gi|227498670|ref|ZP_03928814.1| DNA ligase [Acidaminococcus sp. D21]
 gi|226904126|gb|EEH90044.1| DNA ligase [Acidaminococcus sp. D21]
          Length = 674

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 263/720 (36%), Positives = 397/720 (55%), Gaps = 63/720 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++A  +  +L +E+  +   YY    P I D+EYD+L R+  AI   +P+L     P
Sbjct: 1   MTKQEALLKAQALRKELERNSYLYYVEDMPTITDAEYDSLMRQLRAIEAEYPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG       +V H  P LSL   ++ E++++F  R++    K  D  + + +E
Sbjct: 58  DSPTQHVGGYAKPGFTEVHHITPLLSLANAFSPEEMKEFDRRVHEGLPK--DAKVEYVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEV 187
           PKIDG   +I YE G+FV AA RGDG  GE+V+  +R I  IP+VLS    + IPE+++V
Sbjct: 116 PKIDGLACSIIYENGRFVRAATRGDGMVGENVTENVRTIKNIPKVLSSLPGVPIPELLDV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGEVY+ ++ FL LN+E +  G   +ANPRNAA+G LR+L+P     R L FF +G+G  
Sbjct: 176 RGEVYMPRHAFLKLNEERVERGETEFANPRNAAAGSLRQLDPRVTARRSLAFFAYGIGTG 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           +        + + ++   GF    G  +  T     +        R +L YD DG+V KV
Sbjct: 236 A---LDTHNDSMDRLEAYGFTTTEGRTKVATIEEANALIARHGERRKSLGYDTDGVVVKV 292

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +    Q  LG   + PRW +++KF  +QA T L DI IQ+GRTG+LTP A L+PV + G+
Sbjct: 293 NAVWQQNILGATGKDPRWAMAYKFPPEQAETTLRDIVIQVGRTGVLTPTAVLDPVKLSGS 352

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+ ATLHNED+I             +DIR+GDRV++ +A E+IP+V+ + V +R  + +
Sbjct: 353 TISRATLHNEDFI-----------AEKDIRIGDRVIINKAAEIIPEVLRVAVEKRTGEEK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P+ CP C   VVR    K G+  AA RCT    C A   E L HF SRDA NI+G 
Sbjct: 402 VFHMPAECPECGWPVVR----KNGE--AAVRCTNP-HCPALGREGLIHFTSRDAMNIDGC 454

Query: 487 GKQ---QLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G     QL      +DP+    + A D+  L R               G  S  NL  +I
Sbjct: 455 GPAVLLQLQERNLVKDPSDLYLVTADDLMELDR--------------MGAKSANNLVRAI 500

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +  SL++ +F+LGIRHVGA++AR+LA  Y       Q ++ ++    ++   L ++P
Sbjct: 501 AASKENSLDKLLFALGIRHVGAKVARTLAMKY-------QTMDALMEATQEE---LAQIP 550

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQ 659
            +G +IA+++V ++ +P N   +E  LKE+  +   +G    N +     K +VFTGTL 
Sbjct: 551 DIGPVIAESVVTYFGDPGNQDYIER-LKELGLNMKMLGTAASNENHPFYGKTMVFTGTLP 609

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + R  AQ    ++GA V++ +S+KTD ++ G +PGSK  KAQ LGV I++E  F  LL+
Sbjct: 610 TLDRATAQTMAQEVGAKVTSSVSKKTDYVVAGADPGSKYTKAQSLGVTILDEAAFRRLLE 669


>gi|148826285|ref|YP_001291038.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittEE]
 gi|166215778|sp|A5UD04|DNLJ_HAEIE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148716445|gb|ABQ98655.1| DNA ligase [Haemophilus influenzae PittEE]
          Length = 670

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 261/715 (36%), Positives = 410/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKQLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G    AA RGDG  GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYVNGVLTQAATRGDGTIGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYQDIQNKRSSLGYDIDGTVLKIN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW  ++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 294 DIALQNELGFISKAPRWATAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+   +
Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GTKSAENALNSLENAK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+
Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665


>gi|121611375|ref|YP_999182.1| DNA ligase [Verminephrobacter eiseniae EF01-2]
 gi|166216275|sp|A1WRA7|DNLJ_VEREI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121556015|gb|ABM60164.1| DNA ligase, NAD-dependent [Verminephrobacter eiseniae EF01-2]
          Length = 693

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/714 (36%), Positives = 386/714 (54%), Gaps = 52/714 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QA   + +L +++ +    Y+    P + D+EYD   +   A+  A P L     P+ P 
Sbjct: 18  QADARIRALREQLVHWAHQYHVLDAPSVPDAEYDRAFQALQALEAAHPALI---TPDSPT 74

Query: 76  NKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEP 132
            ++ G +   L  V H++P LS+  E        + F  R+ R     D D +I + +EP
Sbjct: 75  RRVQGAVLQGLTPVRHALPMLSIQTETDTGAGGAQAFDARVRRELGLTDADPAIEYVVEP 134

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K DG  + +RYE  + V AA RGDG  GEDV+  IR I  IP  L  + P ++EVRGEVY
Sbjct: 135 KFDGLAMGLRYENRRLVQAATRGDGEIGEDVTHNIRTIRQIPLGLPDDAPALLEVRGEVY 194

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + + DF ALN    A   K + NPRNAA+G +R+L+  +IT  R L FF +GLG  +   
Sbjct: 195 MRRADFDALNQRQRAQSGKTFVNPRNAAAGAVRQLD-ANITAQRPLRFFAYGLGAVTAPG 253

Query: 251 AKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             G      Y +LQ ++  GFPV   V  A+    + + + ++ + R  LPYDIDG+VYK
Sbjct: 254 EGGPAWRTHYALLQTLKSWGFPVAEQVGIAHGASQLAALHEQIGARRDALPYDIDGVVYK 313

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+   LQ+ LG + R PRW ++HK+  ++  TR+  I++Q+GRTG LTPVARL PV +GG
Sbjct: 314 VNALQLQRDLGFKTREPRWAVAHKYPAQEMPTRVEGIELQVGRTGKLTPVARLAPVFVGG 373

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +TNATLHN   I+            + +RVGD V V+RAG+VIP+VV ++  +R    
Sbjct: 374 VTVTNATLHNLFEIR-----------KKQVRVGDTVTVRRAGDVIPEVVGVLPGQRSAYV 422

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F  P+ CP+C S VVR+      K  A HRCTGGL C+AQ+ E L HF +R A +IEG
Sbjct: 423 ANFRMPAHCPVCGSAVVRE------KGEANHRCTGGLFCAAQRKEALLHFAARRALDIEG 476

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + +D    +E     +R   D++ L          +  +    + S  NL D++ K 
Sbjct: 477 LGDKLVDQLVDAE----LVRGLPDLYRL------DLVALSALDRMAEKSAQNLLDALEKS 526

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R  +L RF+F LG+RHVG   A+ LA+++            + A  N     L++V  +G
Sbjct: 527 RQTTLPRFLFGLGLRHVGEATAKDLARHF----------GTLDAIMNASVEQLLQVSDIG 576

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++AQ++  F+Q P N   V  L    +    G   +  +  +  K +V TGTL  + R 
Sbjct: 577 PVVAQSLHCFFQQPHNREVVAQLRACGLRWPEGAPPERPAQRLAGKSVVLTGTLPTLGRD 636

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            A++ +   GA V+  +S+KT  +I G   GSKL KA++LG+ +++E   L LL
Sbjct: 637 AARDLLEAAGAKVTGSVSKKTSYLIAGAEAGSKLAKARELGIPVLDEAGMLALL 690


>gi|120611505|ref|YP_971183.1| DNA ligase [Acidovorax citrulli AAC00-1]
 gi|166215380|sp|A1TR21|DNLJ_ACIAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120589969|gb|ABM33409.1| DNA ligase, NAD-dependent [Acidovorax citrulli AAC00-1]
          Length = 732

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 264/747 (35%), Positives = 389/747 (52%), Gaps = 89/747 (11%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           ++L  ++      YY    P + D+EYD + +   A+  A P+L     P+ P  ++ G 
Sbjct: 24  AALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQALETAHPELV---TPDSPTQRVIGA 80

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQ-KKDDNSIFFTLEPKIDGTM 138
           +   L  V H++P LS+    + E      F  R+ R  +   D   + +  EPK DG  
Sbjct: 81  VMEGLTPVRHTVPMLSIRTETDTEASGAETFDARVRRELKLAPDAPPVEYVAEPKFDGLA 140

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYIS 194
           +++RYE G+ V AA RGDG  GEDV+  IR I  IP  L       +P ++EVRGEVY+ 
Sbjct: 141 MSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLPTGGRYGVPPVLEVRGEVYMR 200

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           + DF  LN+     G K + NPRNAA+G +R+L+      R L+FF +GLG  +     G
Sbjct: 201 RADFDRLNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLGDITPAAEGG 260

Query: 254 -----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 ++ML++++  GFPV   VR A     +V+++ E+ + R  LPYDIDG+VYKV+ 
Sbjct: 261 PDFATHFDMLRQLKAWGFPVAAQVRTARGASELVAFHQEVGASRDQLPYDIDGVVYKVNS 320

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+GRTG LTPVARL PV +GG  +
Sbjct: 321 LALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGVTV 380

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP- 427
           TNATLHN   I+            + +RVGD+V+V+RAG+VIP+VV  +     P A   
Sbjct: 381 TNATLHNLFEIR-----------KKGVRVGDQVIVRRAGDVIPEVVGTVPAALLPVAGAL 429

Query: 428 ----------------------------------FSFPSFCPICQSRVVRDLNPKTGKLV 453
                                             F  P  CPIC S VVR+      K  
Sbjct: 430 QGSDALADAASGADGTAPGADAARAAPRSPYVPNFRMPRQCPICGSTVVRE------KGE 483

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
           A HRCTGGL C AQ+ E L HF  R A +IEGLG++ +D   + +     IR   D++ L
Sbjct: 484 ANHRCTGGLFCPAQRKEALLHFAQRRAMDIEGLGEKLVDQLVEGQ----VIRTLPDLYRL 539

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                   T + ++    + S  N+  ++ K ++ +L RF+F LGIRHVG   A+ LA++
Sbjct: 540 ------GLTALSSLDRMAEKSAQNVLAALEKSKHTTLPRFLFGLGIRHVGEATAKDLARH 593

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EV 632
           +            + A  +     L+ V  VG ++A+AI  F+  P N   VE L    V
Sbjct: 594 F----------GGLDAIMDASVEQLLEVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGV 643

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +   G   +  +  +  K  V TGTL  + R  A++ +   GA V+  +SRKT  ++ G+
Sbjct: 644 TWKEGPPAERATLPLAGKTFVLTGTLPTLSREDAKDRLEAAGAKVAGSVSRKTHYVVAGE 703

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GSKL KAQ+LGV +++E   L LLQ
Sbjct: 704 EAGSKLAKAQELGVPVLDEAGMLALLQ 730


>gi|291613759|ref|YP_003523916.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
 gi|291583871|gb|ADE11529.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
          Length = 701

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/725 (35%), Positives = 407/725 (56%), Gaps = 66/725 (9%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L ++I+ +D  YY    P I D+EYD L R   A+    P+L  S+ P     ++GG+  
Sbjct: 13  LRKQIAEYDYWYYVKDMPRIPDAEYDKLFRELQALEAQHPELLASDSPT---QRVGGK-P 68

Query: 84  LSLFK-VTHSIPTLSLEKIWNIEDLRK--FITRIYR-FWQKKDDNSIFFTLEPKIDGTMI 139
           L +F+ V H++P LS+    +I D     F  R+ R     ++D  I +  E K DG  +
Sbjct: 69  LDMFQPVRHAVPMLSIRTETDISDQGAIAFDARVRRELGLNENDPPIEYVCELKFDGLAL 128

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            +RYE+G+ V AA RGDG +GEDV+  +R I  IP  L    P ++EVRGEVY+++ DF 
Sbjct: 129 NLRYEQGRLVQAATRGDGETGEDVTQNVRTIHQIPLSLEGMCPGVLEVRGEVYMARPDFE 188

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE--IFAKGQYE 256
             N+     G     NPRN A+G +R+L+P    R  L FF +GLG+  E   + +    
Sbjct: 189 RYNERQRQQGLPTLVNPRNGAAGSIRQLDPALAARRPLKFFAYGLGEKVEGWDWRETHKG 248

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++   GFPV++  R  +   G+V ++  ++++R +LP+DIDG+VYKV+  +LQ++LG
Sbjct: 249 VLDQLEAWGFPVSHECRVVHGAQGLVEFHRRIEAMRDSLPFDIDGVVYKVNSIALQEKLG 308

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R PRW ++HKF  ++  TRL  I+IQ+GRTG LTPVA+LEPV +GG  ++NATLHNE
Sbjct: 309 FVSREPRWAVAHKFPAEEQVTRLNGIEIQVGRTGKLTPVAKLEPVFVGGTTVSNATLHNE 368

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII------------------V 418
                    G++ R G  I +GD V+V+RAG+VIP+VV ++                  +
Sbjct: 369 ---------GEIRRKG--IHIGDMVIVRRAGDVIPEVVGVVPTMKVEPTIPPSNTINLEL 417

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               P    F  P+ CP+C S VVR+         A  RCTGGL C+AQ+ + + HF  R
Sbjct: 418 TAPSPTLSAFMMPTSCPVCGSHVVREEGE------ADARCTGGLFCAAQRKQAILHFAGR 471

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG + +D     E+   S+   +D++  +     +   ++ +    + S  N+
Sbjct: 472 RAMDIEGLGDKLVDQLV-DENIIHSL---SDLYDEKVLNSQTLAALDRM---AEKSAQNI 524

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            D++ K ++ +L RF+F+LGIRHVG   A+ LA+++        ++  I+  N +    L
Sbjct: 525 VDALEKSKSTALNRFLFALGIRHVGESTAKDLARHF-------GKLEAIMQANVE---QL 574

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTG 656
           + VP VG ++AQ+IV+F+    N   V+  L+ +      HE +   E  +  K  V TG
Sbjct: 575 LAVPDVGPVVAQSIVDFFGEAHNREVVQQ-LRILGVHWAEHEGSSVRELPLSGKTFVLTG 633

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R +A+  +  LGA V+  +S+KTD ++ G   GSKL+KA++L V + +E+Q   
Sbjct: 634 TLANLSRDEAKSRLEALGAKVAGSVSKKTDCVVAGVEAGSKLDKARELNVPVWDEQQLFD 693

Query: 717 LLQQY 721
            L++Y
Sbjct: 694 QLKEY 698


>gi|307546309|ref|YP_003898788.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581]
 gi|307218333|emb|CBV43603.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581]
          Length = 700

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/712 (34%), Positives = 393/712 (55%), Gaps = 56/712 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E + L  E+   +  YY   +P + D++YD   RR   I   +P+L R   P+ P  ++G
Sbjct: 29  EAARLRAELDDANHRYYVLDEPRMTDADYDRKLRRLQEIETEYPELVR---PDSPTQRVG 85

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                   ++ H++P LSL+  ++ ++L  F+ R+    +  D  SI F  EPK+DG  +
Sbjct: 86  AAPADGFPEIEHAVPMLSLDNAFDEDELAAFVKRVADRLEI-DGESIAFCCEPKLDGAAV 144

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           ++ YE+G+      RGDG +GE +++ +R + +IP ++   + P+++EVRGEV +   DF
Sbjct: 145 SLVYERGELTAGVTRGDGRTGEGITSNLRTLKSIPLKLRGRHWPDVLEVRGEVTMRHADF 204

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYLNFFVHGLGKTSEIFAKGQYE 256
            A+ND+    G K +ANPRNAA+G LR+L+P  TD  R L F  +   +         + 
Sbjct: 205 EAMNDKAREEGGKVFANPRNAAAGSLRQLDPRITD-QRPLEFSAYQAARIEPDAGDASHS 263

Query: 257 -MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            ++ ++   GF  +  +R      G++ Y   +   R  L YDIDG+V KVD+  LQ++L
Sbjct: 264 ALMARLSEFGFRTSAELRVVRGTEGVIEYCRALGEKRDALGYDIDGVVIKVDDLRLQREL 323

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW I+ KF  ++  TRL D++ Q+GRTG +TPVARLEPV++ G  ++NATLHN
Sbjct: 324 GFVARAPRWAIAFKFPAQEQVTRLNDVEFQVGRTGAITPVARLEPVSVAGVTVSNATLHN 383

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L            + +GD V ++RAG+VIP+VV +   +R  DA+   FP  CP
Sbjct: 384 ADEIARL-----------GVMIGDTVAIRRAGDVIPQVVRVQEEDRPDDAREIVFPERCP 432

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S++ R  +       A  RC+GGL C+AQ+ E LKHF SR A +IEGLG++ +D   
Sbjct: 433 VCDSQIERLEDE------AVARCSGGLYCAAQRKEALKHFASRRALDIEGLGEKLIDQLV 486

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + +     ++ PAD+F L+        ++  +   G+ S  NL  ++ K +  +L RFIF
Sbjct: 487 ELD----WVQTPADLFALE------AERLATLPRMGEKSSQNLVTALEKAKATTLPRFIF 536

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A +LA+++ + +       + +   +D          VG I+A  +  F
Sbjct: 537 ALGIREVGEATAANLARHFGTLEALMDAERDALEQVDD----------VGPIVAAHVHTF 586

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-----ENKKLVFTGTLQKIQRHKAQEYV 670
           ++ P N   + AL +      G H +    EI     E +  V TGT++ + R + +  +
Sbjct: 587 FRQPHNRDTIAALRQ-----AGVHWEEAEVEIGPTLLEGQSWVLTGTMESMTRDEGKARL 641

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S+KT  ++ G+  GSKL KA+QLGV++++E  FL  L+ + 
Sbjct: 642 QALGAKVAGSVSKKTACLVAGEAAGSKLTKAEQLGVEVIDEATFLERLEAWE 693


>gi|329897281|ref|ZP_08272019.1| DNA ligase [gamma proteobacterium IMCC3088]
 gi|328921277|gb|EGG28673.1| DNA ligase [gamma proteobacterium IMCC3088]
          Length = 674

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/713 (36%), Positives = 394/713 (55%), Gaps = 68/713 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   I  +   YY++  P I D+EYD L R    +    P  AR + P     ++
Sbjct: 7   KRIAELIALIERYSQEYYEHDAPSISDAEYDQLFRELQTLEVQNPQYARRDSPT---QRV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG+       V H IP LSL+  ++ ++L  F  R        +  +I +  EPK+DG  
Sbjct: 64  GGKPVEGFAPVMHVIPMLSLDNAFSNDELLDFDRRARERLGLLETATIDYVCEPKLDGIA 123

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII---EVRGEVYISK 195
           + IRYE+G  V AA RGDG +GED++  ++ +  IP  L L+  E I   EVRGE+++ K
Sbjct: 124 VAIRYERGMLVQAATRGDGQTGEDITHNVKTVKNIP--LQLHGAESIDALEVRGEIFMPK 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKG 253
             F  LN    A G K +ANPRNAA+G LR+L+P     R L F+ +G+G T  +     
Sbjct: 182 RGFTRLNQRAEAQGEKTFANPRNAAAGSLRQLDPAITAKRPLAFYCYGVGVTQGVDIPDS 241

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           QY +L+    LG PVN+ V+  +     + YY ++   RS L YDIDG+VYKV+  + Q 
Sbjct: 242 QYGLLRWYESLGLPVNDEVQAVSGIQACIDYYEQLSRRRSGLDYDIDGIVYKVNSLAEQA 301

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +R+PRW I+ KF  ++A T LLD++ Q+GRTG +TPVARLEPV++GG +++NATL
Sbjct: 302 DLGFVSRAPRWAIARKFPAEEALTHLLDVEFQVGRTGAITPVARLEPVSVGGVVVSNATL 361

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L            +++GD V+V+RAG+VIP+V   +  ER  + +   FPS 
Sbjct: 362 HNADEIDRL-----------QVKIGDLVVVRRAGDVIPQVARALPEERRGELRKIVFPSH 410

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S +VR+         A  RC+G L CSAQ+   + HFVSR A +IEG G++ ++ 
Sbjct: 411 CPVCGSAIVREEGE------AVQRCSGALTCSAQRKGAIIHFVSRKAMDIEGFGEKLVEQ 464

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     ++ P+DI+ L   +  +  ++      G  S  NL D+I++ +  +  RF
Sbjct: 465 LVDIE----RLKDPSDIYGLTFNELAALPRM------GAKSAQNLIDAIDRSKRTTFARF 514

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A  LA Y+        +I ++IA + DD   L+ VP VG I+A  I 
Sbjct: 515 LYALGIREVGVTTAERLADYF-------GDIESLIAASVDD---LLAVPDVGPIVANHIR 564

Query: 614 EFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQ 662
            F  +  ++  +  L++      EV+P           +++N  L     V TG L+   
Sbjct: 565 SFLNSSTHLEVISTLVQAGLSWPEVAP----------IDVDNAPLVGQTWVVTGKLETFS 614

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A E +  LGA V+  +S KT +++ G   GSKL KAQ LGV+++NE++FL
Sbjct: 615 REEATELLKSLGASVAGSVSNKTTVLLAGPGAGSKLAKAQALGVEVINEDEFL 667


>gi|145633173|ref|ZP_01788905.1| DNA ligase [Haemophilus influenzae 3655]
 gi|144986399|gb|EDJ92978.1| DNA ligase [Haemophilus influenzae 3655]
          Length = 670

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/715 (36%), Positives = 410/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTQLDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G    AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTS 247
           V++    F  LN   +    K +ANPRNAA+G LR+L+P   ++    LN +  G+ +  
Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYSIGIAEGV 234

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +     Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 235 NL-PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+   +
Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIF+LGIR VG   A +LA ++ +            A  + +   L +V  VG+
Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVSDVGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL
Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665


>gi|153207803|ref|ZP_01946403.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
 gi|120576355|gb|EAX32979.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
          Length = 670

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/711 (36%), Positives = 411/711 (57%), Gaps = 58/711 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L +EI+ H+  YY  S+P I DS YD L      +   +P+   +  P+ P  +
Sbjct: 8   QKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSSPTQR 64

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G E  L +F+ V H IP LSL+ +++ + LR F  RI +  + K D    +  EPK+DG
Sbjct: 65  VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 121

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV + +
Sbjct: 122 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252
             F   N E    G K +ANPRNAASG LR+L+P     R L F+ +  GL K  + F K
Sbjct: 182 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   +Q
Sbjct: 241 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++NAT
Sbjct: 301 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D         ++ R  +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    PS
Sbjct: 361 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C + V++      G+ VA  RC GGL C AQ  E +KHF SR A +IEGLG + ++
Sbjct: 410 RCPVCHAEVIKP----EGEAVA--RCMGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F +        ++  DI  + + ++++ T +  +   G+ S  NL  +I K +  +L R
Sbjct: 464 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG   AR+LA+++        E++ ++  + +   +L  +  +G ++A+ I
Sbjct: 514 FLYALGIRGVGDTTARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVVAENI 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668
             F+    N   +  L+      +G H   EK  V SEI  K  V TG L+ + R +A+E
Sbjct: 564 HAFFHQKHNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 619 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669


>gi|37525354|ref|NP_928698.1| NAD-dependent DNA ligase LigA [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81416713|sp|Q7MBH2|DNLJ_PHOLL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|36784781|emb|CAE13691.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 672

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/708 (34%), Positives = 404/708 (57%), Gaps = 51/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L   + +H+  Y+    P I D+EYD L +    +   +P+L  S+ P     +I
Sbjct: 6   QQIEKLRTTLRHHEYLYHVMDAPEIPDAEYDRLMQELQDLEEQYPELITSDSPT---QRI 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G     +  +V H IP LSL+ +++ E    F  R+    ++  D  +    E K+DG  
Sbjct: 63  GAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKETQD--LVVCCELKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G+ V AA RGDG +GE++++ IR I  IP R+   NIP  IE+RGEV++ +  
Sbjct: 121 VSLLYENGELVRAATRGDGTTGENITSNIRTIGAIPLRLFGENIPARIEIRGEVFMPQKG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQ 254
           F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+ A   
Sbjct: 181 FEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFFCYGVGILEGGELPAS-H 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE L + +  G PV++ V+       ++ +Y+++ + RS L +DIDG+V K++   LQ+ 
Sbjct: 240 YERLIQFKKWGLPVSDKVKVCTDSQQVIDFYHDIVNQRSALGFDIDGVVVKINSLELQEI 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW  + KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++NATLH
Sbjct: 300 LGFVARAPRWATAFKFPAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVSGVIVSNATLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            +R+GD V+++RAG+VIP+VV ++   R  D+    FP  C
Sbjct: 360 NADEIERL-----------GLRIGDTVIIRRAGDVIPQVVGVLEERRPQDSNVVVFPEHC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C +    D+    G+ VA  RCTGGL C AQ+ E L+HFVSR A +++G+G++ +D  
Sbjct: 409 PVCGA----DIERIEGEAVA--RCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKIIDQL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     ++ PAD+F L      +  K+  +   G  S  N+ D++ K +  +  RF+
Sbjct: 463 VDKE----YVKTPADLFRL------TAGKLTGLDRMGPKSAQNVVDALEKAKKTTFARFL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA ++        E++ +    + D  +L  V  VG+++A+ +V 
Sbjct: 513 YALGIREVGEATAANLAAHF-------GELDKL---RSADEEALKEVQDVGEVVAKHVVN 562

Query: 615 FYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F+  P N   ++ L+ ++     P +    + + S    K +V TG+L ++ R +A+  +
Sbjct: 563 FFIEPHNQTVIDDLIDDIGINWEPVVVTRAEKIDSPFSGKTVVLTGSLHQLSRDEAKAKL 622

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             LGA V+  +S+KTD++I G+  GSKL KA +L + +++EE+ + LL
Sbjct: 623 VALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIPVIDEEEMIRLL 670


>gi|212218835|ref|YP_002305622.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
 gi|254781301|sp|B6J878|DNLJ_COXB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212013097|gb|ACJ20477.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
          Length = 673

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/711 (36%), Positives = 411/711 (57%), Gaps = 58/711 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L +EI+ H+  YY  S+P I DS YD L      +   +P+   +  P+ P  +
Sbjct: 11  QKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSSPTQR 67

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G E  L +F+ V H IP LSL+ +++ + LR F  RI +  + K D    +  EPK+DG
Sbjct: 68  VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 124

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV + +
Sbjct: 125 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 184

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252
             F   N E    G K +ANPRNAASG LR+L+P     R L F+ +  GL K  + F K
Sbjct: 185 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 243

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   +Q
Sbjct: 244 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 303

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++NAT
Sbjct: 304 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNAT 363

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D         ++ R  +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    PS
Sbjct: 364 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 412

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C + V++      G+ VA  RC GGL C AQ  E +KHF SR A +IEGLG + ++
Sbjct: 413 RCPVCHAEVIKP----EGEAVA--RCMGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 466

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F +        ++  DI  + + ++++ T +  +   G+ S  NL  +I K +  +L R
Sbjct: 467 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 516

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG   AR+LA+++        E++ ++  + +   +L  +  +G ++A+ I
Sbjct: 517 FLYALGIRGVGDTTARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVVAENI 566

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668
             F+    N   +  L+      +G H   EK  V SEI  K  V TG L+ + R +A+E
Sbjct: 567 HAFFHQKHNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 622 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672


>gi|212212963|ref|YP_002303899.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
 gi|254781302|sp|B6J1C6|DNLJ_COXB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212011373|gb|ACJ18754.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
          Length = 677

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 260/711 (36%), Positives = 410/711 (57%), Gaps = 58/711 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L QEI+ H+  YY  S+P I DS YD L      +   +P+   +  P+ P  +
Sbjct: 11  QKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSSPTQR 67

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G E  L +F+ V H IP LSL+ +++ + LR F  RI +  + K D    +  EPK+DG
Sbjct: 68  VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 124

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV + +
Sbjct: 125 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 184

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252
             F   N E    G K +ANPRNAASG LR+L+P     R L F+ +  GL K  + F K
Sbjct: 185 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 243

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   +Q
Sbjct: 244 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 303

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++NAT
Sbjct: 304 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNAT 363

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D         ++ R  +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    PS
Sbjct: 364 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 412

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C + V++      G+ VA  RC GGL C AQ  E +KHF SR A +IEGLG + ++
Sbjct: 413 RCPVCHAEVIKP----EGEAVA--RCVGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 466

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F +        ++  DI  + + ++++ T +  +   G+ S  NL  +I K +  +L R
Sbjct: 467 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 516

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG   AR+LA+++        E++ ++  + +   +L  +  +G + A+ I
Sbjct: 517 FLYALGIRGVGDTTARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVAAENI 566

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668
             F+    N   +  L+      +G H   EK  V SEI  K  V TG L+ + R +A+E
Sbjct: 567 HAFFHQKHNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 622 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672


>gi|121587330|ref|ZP_01677101.1| DNA ligase [Vibrio cholerae 2740-80]
 gi|121730035|ref|ZP_01682446.1| DNA ligase [Vibrio cholerae V52]
 gi|147675693|ref|YP_001216443.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O395]
 gi|153818602|ref|ZP_01971269.1| DNA ligase [Vibrio cholerae NCTC 8457]
 gi|227081145|ref|YP_002809696.1| DNA ligase [Vibrio cholerae M66-2]
 gi|229505430|ref|ZP_04394940.1| DNA ligase [Vibrio cholerae BX 330286]
 gi|262167192|ref|ZP_06034905.1| DNA ligase [Vibrio cholerae RC27]
 gi|298498912|ref|ZP_07008719.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757]
 gi|190359299|sp|A5F2W3|DNLJ_VIBC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781449|sp|C3LTL9|DNLJ_VIBCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121548413|gb|EAX58473.1| DNA ligase [Vibrio cholerae 2740-80]
 gi|121628224|gb|EAX60744.1| DNA ligase [Vibrio cholerae V52]
 gi|126510828|gb|EAZ73422.1| DNA ligase [Vibrio cholerae NCTC 8457]
 gi|146317576|gb|ABQ22115.1| DNA ligase [Vibrio cholerae O395]
 gi|227009033|gb|ACP05245.1| DNA ligase [Vibrio cholerae M66-2]
 gi|227012788|gb|ACP08998.1| DNA ligase [Vibrio cholerae O395]
 gi|229357653|gb|EEO22570.1| DNA ligase [Vibrio cholerae BX 330286]
 gi|262024413|gb|EEY43101.1| DNA ligase [Vibrio cholerae RC27]
 gi|297543245|gb|EFH79295.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757]
          Length = 669

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L + +  H   YY    P I D+EYD L R    +  A P+L  S+ P+    ++
Sbjct: 6   QRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +   V H IP LSL+  ++  +L  F  R+    Q    ++  F  EPK+DG  
Sbjct: 63  GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHSA--FCCEPKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G    AA RGDG +GE+++  +R I  IP R+   + P  +EVRGEV++ K  
Sbjct: 121 VSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253
           F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G  +  E+ A  
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+   +++  G P+    +   +   + ++Y ++   R  L Y+IDG+V KVD+  LQ+
Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQLQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATL
Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   FP+ 
Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQS V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ 
Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L +F
Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A +LA+++LS +   Q                I VP VG ++A  ++
Sbjct: 512 LYALGIREVGDATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLL 561

Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+  + 
Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|198283038|ref|YP_002219359.1| NAD-dependent DNA ligase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666742|ref|YP_002425245.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|254781244|sp|B7J653|DNLJ_ACIF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781245|sp|B5EP61|DNLJ_ACIF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|198247559|gb|ACH83152.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518955|gb|ACK79541.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 671

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 247/705 (35%), Positives = 390/705 (55%), Gaps = 48/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L  E+   ++ YY+   P + D+EYDA  R    +    P    ++ P     ++
Sbjct: 10  ERIQQLRAELVAANNAYYREDSPTLSDAEYDARLRELRTLEDRNPQWQSADSPT---QRV 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G        +V ++IP  SL+ +++ +    ++ R+ +   ++D   +  + EPK DG  
Sbjct: 67  GAAPVEVFGEVHYAIPLTSLDNVFDQDGFSDWLARVQKGLGRED---VPLSAEPKFDGLS 123

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           + IRY +GK V A  RGDG +GEDV+A +R I  +P  L+  + PE++EVRGEV I    
Sbjct: 124 VNIRYIEGKLVQAGTRGDGQTGEDVTANVRTIRNVPLQLTGKDWPELLEVRGEVVIPVAA 183

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E +  G  P+ANPRNAA+G LR+L+ +    R L +F  G G++S    K    
Sbjct: 184 FRRLNGERLRAGDNPFANPRNAAAGSLRQLDSSVTAKRPLAYFPWGWGESSVPLGKSHIA 243

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +++++   GF V + +R  +       Y++EM+ IR  +P++IDGLV+KVD+   ++QLG
Sbjct: 244 VMERLSAWGFEVTSYLRGVHELTECQRYFSEMQKIREGMPFEIDGLVFKVDDLLAREQLG 303

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW I++KF   +  T + DI   +GRTG++TPVA L+PV +GG  ++ A+LHN+
Sbjct: 304 FTARAPRWAIAYKFPAHEERTVVEDILASVGRTGVITPVAVLKPVQVGGVTVSRASLHNQ 363

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D +             +DIRVGD VLV+RAG+VIP+VV +I  ER P  QP+  P  CP+
Sbjct: 364 DEVD-----------RKDIRVGDTVLVRRAGDVIPEVVMVIKEERPPATQPWHMPQRCPV 412

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V+R  N       +AHRC GGL C AQ++  ++HF SR A +I GLG++ ++    
Sbjct: 413 CGSEVLRLANE------SAHRCMGGLYCPAQRMGAIRHFASRRAMDIRGLGEKLVEQLVG 466

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +   ADI+ L    + +   +E +      S   L   I++ R+ SL RF+++
Sbjct: 467 HG----LVHTVADIYHL---DEAALCGLERM---ASRSAQKLLAEIDRSRHTSLPRFLYA 516

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A+SLA Y+        +++ ++A   +    L  +P VG I+A+++  F+
Sbjct: 517 LGIRQVGEGTAKSLAIYF-------GDLDPLMAATPE---LLQNIPDVGPIVAESVAHFF 566

Query: 617 QNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             P N   + AL    V  ++ + +K      +   LV TG L  + R +A+  +   G 
Sbjct: 567 AQPHNRDVIAALRAAGVQWAVVQPQKG--GRFQGMTLVLTGALDNMTREEAKTAIENAGG 624

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            VS  +S KT  ++VG +PGSK EKA +LGVK + E QFL +  +
Sbjct: 625 KVSGSVSAKTSYVVVGKDPGSKAEKAAKLGVKQLTEAQFLAMFSE 669


>gi|292488952|ref|YP_003531839.1| DNA ligase [Erwinia amylovora CFBP1430]
 gi|292900089|ref|YP_003539458.1| DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291199937|emb|CBJ47061.1| DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291554386|emb|CBA21816.1| DNA ligase [Erwinia amylovora CFBP1430]
          Length = 670

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/715 (34%), Positives = 409/715 (57%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +   +P+L  S+ P  
Sbjct: 1   MESLQDKITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTSDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+  ++ E    F  R+    +  DD  I F  E K
Sbjct: 60  --QRVGAAPLSAFGQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YEKG+ V AA RGDG +GED++A +R I  IP  LS + IPE +EVRGEV+
Sbjct: 116 LDGLAVSLLYEKGQLVRAATRGDGTTGEDITANVRTIRAIPLRLSGDSIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           +    F  +N +  + G+K +ANPRNAA+G LR+L+P     R L FF +GLG  +  E+
Sbjct: 176 MPLAGFEQMNQQARSCGQKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGLGLLEGGEM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +     LQ+ +  G PV++ VR +++   ++ +Y+++++ R TL +DIDG+V KVD  
Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRVRLSHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG  AR+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 ELQEQLGFVARAPRWAIAFKFPAQEQITTVRDVEFQVGRTGAMTPVARLEPVLVAGVMVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +++GDRV+++RAG+VIP+V+ ++  E   DA   +
Sbjct: 355 NATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVV--ETGDDALEIA 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CPIC S    D+    G++VA  RCTGGL C AQ+   LKHFVSR A +I+G+G++
Sbjct: 402 FPTHCPICGS----DIERVEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGEK 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     E     ++ PA++F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 456 IIDQLVDKE----YVKNPAELFEL------TAGKLTGLDRMGPKSAQNVVNALAKAKQTT 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGI  VG   A +LA ++ + +          A    D  +L+ V  VG ++A
Sbjct: 506 FARFLYALGISEVGEATAANLAAHFGTLE----------ALMTADLDALMAVQDVGKVVA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F     N   +  L+ +   +    +      + S    K +V TG+L  + R +
Sbjct: 556 SHVRNFLDEESNREIIRLLVDKAGVNWPQVVVVKAGEIDSPFAGKTVVLTGSLSILSRDE 615

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E++ + LL +
Sbjct: 616 AKDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMIRLLGE 670


>gi|255318624|ref|ZP_05359855.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
 gi|255304306|gb|EET83492.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
          Length = 678

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/715 (36%), Positives = 393/715 (54%), Gaps = 55/715 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L Q I+ H+  YY   +P I D+EYD+L  +  A+   +PDL +++ P     ++G
Sbjct: 10  QMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDTPT---RRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+       V H++P LSL  ++N EDL  F  R+    ++     + + +E K+DG  I
Sbjct: 67  GQALSKFMSVRHAVPMLSLGNVFNKEDLFAFARRVE---ERLPGQQVKYEVELKLDGLAI 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISKN 196
           ++ YE G+ V    RGDG +GED++  ++ I  +P+ L      IP+++EVRGEV I K 
Sbjct: 124 SLWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSDQAAIPKLLEVRGEVLIPKT 183

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS-EIFAKGQ 254
            FL LN E  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +   E      
Sbjct: 184 GFLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGIAQCEPEHHLNSM 243

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +R LGF +       ++   +   Y ++   R+ L  +IDG+V KVD    QKQ
Sbjct: 244 TESLHWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVDSLKQQKQ 303

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R PRW  ++KF    A T + +ID Q+GRTGILTPVARL PV +GG  ++N TLH
Sbjct: 304 LGFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVTVSNVTLH 363

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I  L           D+R+GD V V R G+VIPKV  +    R   A+  + P  C
Sbjct: 364 NIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEVINLPETC 412

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S VV       G+ +A  RC+G L C+AQ++E ++HFVSR A +IEGLG + ++  
Sbjct: 413 PVCASPVVM----PEGEALA--RCSGELYCAAQRIESIRHFVSRKAMDIEGLGDRWVESL 466

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     ++  +DI+ L + + T    +  I   G+ SV NL ++I + +  +L RFI
Sbjct: 467 LHLE----LLKDVSDIYHLHQHRNT----LLGIEKMGEKSVQNLINAIEQSKKTTLARFI 518

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   AR LA  + + +   Q           D  SL +VP VGDI A+ I +
Sbjct: 519 YALGIRGVGETTARMLANSFQTLEALQQA----------DVDSLKKVPDVGDITAEWIYD 568

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F++   N+  ++ LL     + G H      +    +  +  V TGTL+ + R +A + +
Sbjct: 569 FFRAEHNLEVIDRLL-----AAGIHWDAPIASTRQPLNGESWVLTGTLEHLTREQATQML 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             LGA VS  +S KT  ++ G+  GSKLEKAQ+L ++ +NE+QF+ L++ Y   +
Sbjct: 624 QALGARVSGSVSAKTKCVVAGEKAGSKLEKAQKLNIQTLNEKQFIELMETYGQVI 678


>gi|157961514|ref|YP_001501548.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345]
 gi|190359287|sp|A8H376|DNLJ_SHEPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157846514|gb|ABV87013.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345]
          Length = 668

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 252/710 (35%), Positives = 401/710 (56%), Gaps = 56/710 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + E++ L  E++ H+  YY    P I D+EYD L  R  A+    P+  R   P+ P  +
Sbjct: 5   QNEIAQLTAELNQHNYRYYVDDSPSIPDAEYDRLLNRLKALETEHPEFCR---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE      ++ H  P LSL+ +++ ++   F  RI      K    + +  EPK+DG 
Sbjct: 62  VGGEALAKFEQIKHLKPMLSLDNVFDEQEFTAFNQRIV----DKTGKDLSYCCEPKLDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            ++I Y  G F  AA RGDG +GED++  +R I +IP  L   N P ++EVRGEV +   
Sbjct: 118 AVSIVYRDGVFERAATRGDGQTGEDITENVRTIKSIPLTLRGDNFPPLVEVRGEVIMPHK 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG----KTSEIFA 251
            F ALN+     G K + NPRNAA+G LR+L+     +R L F+ + LG    +T E+ A
Sbjct: 178 AFDALNERARVKGDKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETWEL-A 236

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y  L+++R  G PV+  VR   T   +++YY +++  RS+L ++IDG+V KV++ + 
Sbjct: 237 DSHYGQLEQLRSWGVPVSQEVRGCETVAEVMAYYYDIQQRRSSLEFEIDGVVVKVNQIAH 296

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q  LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  ++NA
Sbjct: 297 QLSLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNA 356

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L            ++VGD ++++RAG+VIP++V ++  +R  DA+   FP
Sbjct: 357 TLHNADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAVVAEKRPDDAKDIVFP 405

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R      G+ V   RCTGGL C AQ+ E +KHF SR A +I+G+G + +
Sbjct: 406 AHCPVCDSEVER----VEGEAVT--RCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKVV 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F   R   ++ T +E +   G  S T L  +I   +  +  
Sbjct: 460 EQLIDKE----LVESPADLF---RLTASAMTMLERM---GMKSATKLVAAIEVAKQTTFA 509

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+++LGIR VG   A +LA Y+       + +  + A + +++   I+V  VG I+A  
Sbjct: 510 RFLYALGIREVGEATAANLAAYF-------KTLEALKAASAEEF---IKVDDVGTIVAAH 559

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +  F   P N+  ++ L++     P++    E+++S  ++ +  V TGTL ++ R+ A+ 
Sbjct: 560 LAHFLAQPHNLEVIDKLVEAGIHWPAVEEVAEEDLS--LKGQTWVLTGTLTQLNRNDAKA 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA V+  +S+ TD ++ G   GSKL KAQ+LGVK+++EE  + +L
Sbjct: 618 KLQALGAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDEEALIAIL 667


>gi|157374877|ref|YP_001473477.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
 gi|190359288|sp|A8FU26|DNLJ_SHESH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157317251|gb|ABV36349.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
          Length = 670

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/713 (36%), Positives = 392/713 (54%), Gaps = 55/713 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I++  K+L+S+  E +Y    YY    P + D+EYD L  R   +    P+L     P+
Sbjct: 3   AIQEEIKQLTSVLNEHNYR---YYVDDAPSVPDAEYDRLINRLKQLEAENPELCL---PD 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       ++TH  P LSL+ +++ ++   F  RI      K   +  F  EP
Sbjct: 57  SPTQRVGGVALAKFNQITHLKPMLSLDNVFSEDEFDAFYKRI----SDKTSETPTFCCEP 112

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  ++I Y  G +  AA RGDG  GED++  +R I +IP ++   + P ++EVRGEV
Sbjct: 113 KLDGLAVSILYRDGVYERAATRGDGSVGEDITENVRTIRSIPLKLRGSDFPPLLEVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247
            + K  F +LND   A G K + NPRNAA+G LR+L+     +R L F+ + LG     S
Sbjct: 173 IMPKKAFDSLNDRARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPES 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               KG +E L +++  GFPV++ V+       ++ YY ++   R  L Y+IDG+V KVD
Sbjct: 233 WPLGKGHHEQLMQLKSWGFPVSSEVKLCGDVKTVLDYYADILERREALDYEIDGVVIKVD 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q QLG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  
Sbjct: 293 SIEHQLQLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I  L            ++VGD V+V+RAG+VIP+VV I+  +R   A  
Sbjct: 353 VSNATLHNADEIARL-----------GVKVGDTVIVRRAGDVIPQVVAIVAEKRPVSAND 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FP  CP+C S V R      G+ VA  RCTGGL C AQ+ E +KHF SR A N++G+G
Sbjct: 402 ILFPQTCPVCDSMVER----TEGEAVA--RCTGGLFCEAQRKEAIKHFASRKALNVDGMG 455

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     +  PAD+F L     T   ++      G  S T L  +I   + 
Sbjct: 456 DKVVEQLIDKE----LVASPADLFRLTASAMTMLDRM------GMKSATKLVAAIEDAKQ 505

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +  RF++ LGIR VG   A +LA Y+       + ++ + + + D++   I+V  VG I
Sbjct: 506 TTFARFLYGLGIREVGEATAANLANYF-------KNLDKLKSADADEF---IKVDDVGAI 555

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +AQ +  F+  P N+  V+ L++     P I    +   S ++ +  V TGTL K+ R+ 
Sbjct: 556 VAQHLTYFFAQPHNLEVVDNLVQAGVHWPEIEEVAEEALS-LKGQTWVLTGTLTKLNRND 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ LGVK+++E+  L +L
Sbjct: 615 AKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQDLGVKVLDEDGLLAVL 667


>gi|148982028|ref|ZP_01816589.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
 gi|145960667|gb|EDK26012.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
          Length = 670

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/705 (36%), Positives = 393/705 (55%), Gaps = 51/705 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           L  L + + YH   YY    P I D EYD L ++   I    P+L   + P+    ++GG
Sbjct: 9   LEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPS---QRVGG 65

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +      +VTH IP LSL+  ++ EDL  F  R+    +    N   F  EPK+DG  ++
Sbjct: 66  QPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSD--RAPTANLKTFCCEPKLDGLAVS 123

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           + Y  G  V AA RGDG +GE+++  +R I +IP ++     PE IEVRGEV++ K  F 
Sbjct: 124 LLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKAGFD 183

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYE 256
            LN+  +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G       +   Y+
Sbjct: 184 KLNEMALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVVEGAELSTSHYQ 242

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
              +++  G P+    +Q ++   + +YY ++ + R  L Y+IDG+V KVD+ + Q+ LG
Sbjct: 243 RFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDALAYEIDGVVIKVDDIAAQEVLG 302

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  ++NATLHN 
Sbjct: 303 FVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNA 362

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L            ++VGD V+++RAG+VIP++V ++ + R   A+   FP  CP+
Sbjct: 363 DEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVFPDACPV 411

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++GLG + ++    
Sbjct: 412 CNSSVER----VEGEAVA--RCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVIEQLVD 465

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     +  PAD+F L      S   I  +   G  S  N+  ++NK ++ +L RF++S
Sbjct: 466 RE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYS 515

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +LA+++ +      E+     H       L+ V  +GDI+A  I  F+
Sbjct: 516 LGIREVGEATAMNLAQHFKTL-----ELVQAATHEQ-----LVEVSDIGDIVASHITAFF 565

Query: 617 QNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
              +N   VE L+ E+    P I     +    +E K +V TG+L ++ R +A+  +  L
Sbjct: 566 SQEKNRAVVEQLI-ELGVNWPVIEDVPDDQELPLEGKVVVLTGSLSQLGRSEAKAALQAL 624

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           GA V+  +S+KTDI+  G+  GSKL KAQ LG++I  EE  + LL
Sbjct: 625 GAKVTGSVSKKTDILFAGEAAGSKLIKAQDLGIEIRTEEDLIALL 669


>gi|317153517|ref|YP_004121565.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2]
 gi|316943768|gb|ADU62819.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2]
          Length = 678

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 251/709 (35%), Positives = 395/709 (55%), Gaps = 59/709 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + I +H+  YY    P I D+EYDAL R   A+  A P+L   +D N P  ++GGE  
Sbjct: 13  LRERIEHHNHRYYVLDDPEISDAEYDALFRELAALEAAHPEL---DDANSPTRRVGGEPA 69

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
           +      H++   SL+    +++   F  R+ +   + +   + +  +PK+DG  + + Y
Sbjct: 70  VGFTPYEHALRMYSLDNAMALDEWFAFAERVSKGLGRSE---VAYWTDPKMDGLAVEVIY 126

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALN 202
           E G+ V AA RGDGH GEDV+  +R +  +P VL   ++P+++EVRGEV +S  DF A+N
Sbjct: 127 EAGRLVRAATRGDGHIGEDVTHSMRTVMNLPLVLRGPDVPDLLEVRGEVVMSNADFAAMN 186

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT---SEIFA-KGQYEM 257
                 G K +ANPRN A+G +R+L+P    +R L F  +G+G+    S +FA   Q+E+
Sbjct: 187 QRRREAGEKVFANPRNGAAGAVRQLDPKVAASRPLRFLAYGVGRVQWGSPLFAWTSQHEI 246

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +  +  LGF V    +   +   +  Y+  +  +R+ LPY+IDG+V KVD   +Q+ LG 
Sbjct: 247 MAGLARLGFAVPPEAKLCGSASEVADYFTRLMELRAGLPYEIDGVVAKVDNLEMQRALGF 306

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW ++ KF   QA T L DI IQ+GRTG+LTPVA LEPV + G +++NATLHN+ 
Sbjct: 307 TSRAPRWALALKFPAHQARTMLRDIRIQVGRTGVLTPVAELEPVPLAGVIVSNATLHNKG 366

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             RD R+GD VL++RAG+VIP+V+ + V +R   A P+ FP+ CP+C
Sbjct: 367 YI-----------AERDFRIGDTVLIQRAGDVIPQVLSVDVGQRPESATPYEFPAICPVC 415

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
                 D     G+ V   RCT    C A+ ++R+ HFVS+   ++EG+G+  +     +
Sbjct: 416 GGEARED-----GEAV---RCTNP-TCPAKTVQRIIHFVSKAGLDMEGVGRTWVRRL--A 464

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK-RRNISLERFIFS 556
           ED    +  PAD+FTL +   T+  + E   G GD S     ++I++ RR   L R I  
Sbjct: 465 EDGV--LETPADLFTLDK---TALLRYE---GMGDKSADKFIEAIDRARRTAPLWRLIAG 516

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG + AR+LA  Y      AQ        + D+ L+L     VG ++A+++  F+
Sbjct: 517 LGIRHVGEQTARTLAARYRDLDALAQA-------DRDELLALDD---VGPVVAESVHFFF 566

Query: 617 QNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYV 670
           ++      ++   + +  P  G+   NV+    N  L     +FTG+L  + R +A+  V
Sbjct: 567 RSEETRSLLQRFREADFWPLGGQTAANVADAAGNAPLAGKVFIFTGSLPGMTRDQAKLLV 626

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G      +S+K D ++ GD  GSK+ KA++LG+ +++ + F+ LLQ
Sbjct: 627 EERGGAAVPSISKKVDYVVAGDKAGSKIAKAEKLGLTVIDFDGFMELLQ 675


>gi|317491275|ref|ZP_07949711.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920822|gb|EFV42145.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 678

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 254/703 (36%), Positives = 395/703 (56%), Gaps = 58/703 (8%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + +H+  Y+    P I D+EYD L R   A+    P+L     P+ P  ++G     +  
Sbjct: 20  LRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEQHPELI---TPDSPTQRVGAAPLSAFS 76

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           +V H +P LSL+ +++ E    F  R++   + K    + F  E K+DG  +++ YE G 
Sbjct: 77  QVRHEVPMLSLDNVFDDESYLAFDKRVHD--RLKTAEPLTFCCELKLDGLAVSLLYEDGV 134

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
            V  A RGDG +GED++A ++ I  IP R+   NIP  +EVRGEV++    F A+N+E  
Sbjct: 135 LVRGATRGDGTTGEDITANVKTIRAIPLRLQGDNIPRRVEVRGEVFMPLAGFEAMNEEAR 194

Query: 207 AVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYEMLQKMRC 263
               K +ANPRNAA+G LR+L+P     R L FF +G+G     E+ A   Y  LQ+ + 
Sbjct: 195 RKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLMDGGELPAS-HYARLQQFKA 253

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
            G PV++ V++      ++ +Y +++  R TL +DIDG+V KVD   +Q+QLG  AR+PR
Sbjct: 254 WGLPVSDRVKRCTGSDEVLKFYRQVEQERPTLGFDIDGVVIKVDSIEIQEQLGFVARAPR 313

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W  + KF  ++  T +  ++ Q+GRTG +TPVARLEPV + G +++NATLHN D I  L 
Sbjct: 314 WATAFKFPAQEQMTVVNGVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHNADEIDRL- 372

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                      +R+GD V+V+RAG+VIP+VV ++  +R  +AQ   FP  CP+C S V R
Sbjct: 373 ----------GLRIGDTVIVRRAGDVIPQVVGVVEAQRPENAQEIVFPQHCPVCGSDVER 422

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
                 G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G + ++   + E     
Sbjct: 423 ----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIEQLVEKE----Y 472

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           ++ PAD++ L     T   ++      G  S TNL +++ K +  +L RF+++LGIR VG
Sbjct: 473 VKTPADLYRLTAGILTGLDRM------GPKSATNLVNALAKSKETTLARFLYALGIREVG 526

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A +LA ++ S +          A    D  +L  V  VG+++A+ +  F     N  
Sbjct: 527 EATAANLAAHFGSLE----------ALREADVEALKSVQDVGEVVAKHVRHFLGEEHNQK 576

Query: 624 AVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            ++ L   +S  IG H         + + S    K +V TG+L  + R +A++ +  LGA
Sbjct: 577 VIDEL---ISDEIGIHWPAPQVIVAEEIDSPFAGKTVVLTGSLSLMPRDEAKDRLAALGA 633

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 634 KVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLL 676


>gi|229846132|ref|ZP_04466244.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
 gi|229811136|gb|EEP46853.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
          Length = 670

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 260/715 (36%), Positives = 410/715 (57%), Gaps = 71/715 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKQLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G    AA RGDG  GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYVNGVLTQAATRGDGTIGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYQDIQNKRSSLGYDIDGTVLKIN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG  +++PRW  ++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  
Sbjct: 294 DIALQNELGFISKAPRWATAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           ++NATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++ +ER PD A+
Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+
Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     I  PAD+F L     T+ T++E +   G  S  N  +S+   +
Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GTKSAENALNSLENAK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+
Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660
           ++A  I  F++   N+  VE L+ +     G H + V    +SE   ++K +V TGTL +
Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A+  + QLGA VS  +S KTD +I G+  GSKL KAQ+L + ++ EE+FL
Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGNAAGSKLAKAQELNITVLTEEEFL 665


>gi|262379150|ref|ZP_06072306.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
 gi|262298607|gb|EEY86520.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
          Length = 682

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/715 (36%), Positives = 393/715 (54%), Gaps = 55/715 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L Q I+ H+  YY   +P I D+EYD+L  +  A+   +PDL +++ P     ++G
Sbjct: 14  QMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDTPT---RRVG 70

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+       V H++P LSL  ++N EDL  F  R+    ++     + + +E K+DG  I
Sbjct: 71  GQALSKFMSVRHAVPMLSLGNVFNKEDLFAFARRVE---ERLPGQQVKYEVELKLDGLAI 127

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISKN 196
           ++ YE G+ V    RGDG +GED++  ++ I  +P+ L      IP+++EVRGEV I K 
Sbjct: 128 SLWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSDQAAIPKLLEVRGEVLIPKT 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS-EIFAKGQ 254
            FL LN E  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +   E      
Sbjct: 188 GFLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGIAQCEPEHHLNSM 247

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +R LGF +       ++   +   Y ++   R+ L  +IDG+V KVD    QKQ
Sbjct: 248 TESLHWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVDSLKQQKQ 307

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R PRW  ++KF    A T + +ID Q+GRTGILTPVARL PV +GG  ++N TLH
Sbjct: 308 LGFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVTVSNVTLH 367

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I  L           D+R+GD V V R G+VIPKV  +    R   A+  + P  C
Sbjct: 368 NIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEVINLPETC 416

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S VV       G+ +A  RC+G L C+AQ++E ++HFVSR A +IEGLG + ++  
Sbjct: 417 PVCASPVVM----PEGEALA--RCSGELYCAAQRIESIRHFVSRKAMDIEGLGDRWVESL 470

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     ++  +DI+ L + + T    +  I   G+ SV NL ++I + +  +L RFI
Sbjct: 471 LHLE----LLKDVSDIYHLHQHRNT----LLGIEKMGEKSVQNLINAIEQSKKTTLARFI 522

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   AR LA  + + +   Q           D  SL +VP VGDI A+ I +
Sbjct: 523 YALGIRGVGETTARMLANSFQTLEALQQA----------DVDSLKKVPDVGDITAEWIYD 572

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F++   N+  ++ LL     + G H      +    +  +  V TGTL+ + R +A + +
Sbjct: 573 FFRAEHNLEVIDRLL-----AAGIHWDAPIASTRQPLNGESWVLTGTLEHLTREQATQML 627

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             LGA VS  +S KT  ++ G+  GSKLEKAQ+L ++ +NE+QF+ L++ Y   +
Sbjct: 628 QALGARVSGSVSAKTKCVVAGEKAGSKLEKAQKLNIQTLNEKQFIELMETYGQVI 682


>gi|126649600|ref|ZP_01721841.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
 gi|126593925|gb|EAZ87848.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
          Length = 667

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/716 (35%), Positives = 407/716 (56%), Gaps = 61/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ   EL+ L  E  Y    YY   KP++ DS YD L     A+  A P L     P+ 
Sbjct: 4   IEQRIAELNKLLHEYGY---AYYVLDKPVVADSVYDQLLHELIALEEANPSLIF---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KVTH  P LSL   +N  DL++F  ++    ++   +   +  E K
Sbjct: 58  PTQRVGGTVVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKV----RQAIGDHFSYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+++YE G FV  A RGDG  GE+++A ++ I  IP  L L  P  IEVRGE Y+
Sbjct: 114 IDGLAISLKYENGVFVQGATRGDGVVGEEITANLKTIHAIP--LRLKEPITIEVRGEAYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA- 251
            K  F  LN +    G + +ANPRNAA+G LR+L+P    +R L+ F++ +G   E++  
Sbjct: 172 PKKSFEKLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G  EML  +  LGFP N   ++ +T   ++++       R  L Y+IDG+V KVD ++ 
Sbjct: 232 DGHAEMLDYLEDLGFPSNKERQRCSTIEEVMAFIEHWTEHRPHLAYEIDGIVIKVDRYAQ 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  A+SPRW I++KF  ++  T LLDID+ +GRTG++TP A L PV + G  +  A
Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +DIR+GD V++++AG++IP+VV +++ +R  ++ PF  P
Sbjct: 352 SLHNEDLIR-----------EKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPENSVPFEMP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S ++R      G++  A RC    AC AQ  E +K+FVSR+A NI+GLG + +
Sbjct: 401 QNCPVCDSELIR----IEGEV--ALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +++     I   +D++ L   Q     ++      G+ S TNL ++I   +  S+E
Sbjct: 454 EQLLRAD----LIHDVSDLYHLTIEQLVELERM------GEKSATNLVNAIQASKENSME 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  LGIRHVG + A+ +++ + S +        ++A  ++    L+ +  +GD +A +
Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEQFGSME-------AVMAATDE---QLVAIYEIGDKMASS 553

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQRHKA 666
           +VE++ N  +  AV   L EV  ++    K V   + +     K +V TG L+++ R++A
Sbjct: 554 LVEYFSND-DAGAVIERLAEVGVNMTFKGKKVEVVVGDNPFAGKTIVLTGKLEQLTRNEA 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  + +LG  V+  +S+KTD++I G++ GSKL KA+QLG+++ NEE    L++Q N
Sbjct: 613 KAKIEELGGTVTGSVSKKTDLVIAGEDAGSKLAKAEQLGIEVWNEEN---LIEQLN 665


>gi|284047985|ref|YP_003398324.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731]
 gi|283952206|gb|ADB47009.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731]
          Length = 675

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/717 (36%), Positives = 391/717 (54%), Gaps = 57/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E A   +  L   +  +   YY    P+I D+EYDA+ R   A+   +P+L     P
Sbjct: 4   MTKEAAAARIDQLRAVMKKNSYLYYVQDNPLITDAEYDAMMRELKALEAEYPELV---TP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG       +V H  P LSL   ++ E++ +F  R++    +  D  + + +E
Sbjct: 61  DSPSQHVGGYAKPGFTEVRHMTPLLSLANAFSPEEMEEFDRRVHEGLPQ--DVKVQYVVE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEV 187
           PKIDG   +I YE G+FV AA RGDG  GE+V+  +R I  IP+VL     + IPE+++V
Sbjct: 119 PKIDGLACSIIYENGRFVRAATRGDGVVGENVTENVRTIANIPKVLKPIPGIEIPELLDV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGEVY+ +  F+ LN+E    G + +AN RNAA+G LR+L+P     R L FF +G+G  
Sbjct: 179 RGEVYMPRQAFVKLNEERQEAGEQEFANCRNAAAGSLRQLDPRVTARRSLAFFAYGVGVG 238

Query: 247 SEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +          +MLQ+    GF    G    +T         +    R+ L YD DG+V 
Sbjct: 239 AGNLPTHNASMDMLQQ---YGFTTTEGRTLVDTIQEANELIKKHGERRAVLGYDTDGVVV 295

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++   Q  LG   + PRW +++KF  +QA T L DI IQ+GRTG+LTP A L PV + 
Sbjct: 296 KVNDVWQQNILGATGKDPRWAMAYKFPPEQAETLLEDIVIQVGRTGVLTPTAVLRPVRLS 355

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ I+ ATLHNED+I+            RDIR+GD V++ +A E+IP+V+ ++  +R  +
Sbjct: 356 GSTISRATLHNEDFIR-----------ERDIRIGDHVIINKAAEIIPEVLRVVPEKRTGE 404

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            + F  P  CP C  +V R    K G+  AA RCT    C A   E L HF SRDA NI+
Sbjct: 405 EKEFHMPETCPECGWKVER----KAGE--AAWRCTNP-HCPALGREGLIHFTSRDAMNID 457

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G G   L         A  ++ P D++ L R Q      +E +   G  S  NL  +I  
Sbjct: 458 GCGPSVLAQLTA----AGLVKDPGDLYLLTREQ------VETLDRMGPKSADNLVSAIAA 507

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +N SL++ +F+LGIRHVGA++A +LA+ Y +       ++ ++A + +D   L + P +
Sbjct: 508 SKNQSLDKLLFALGIRHVGAKVAHTLARKYGT-------MDKLMAADQED---LAQTPDI 557

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKI 661
           G +IA+++V ++ +P N   VE  LKE+  ++         E      K LVFTGTL  +
Sbjct: 558 GPVIAESVVTWFADPMNQAYVER-LKELGLNMEMTSGPAQDENHPFYGKTLVFTGTLPTL 616

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R  A+    ++GA V+  +S+KTD ++ G +PGSK  KAQ LGV I++E +FL ++
Sbjct: 617 DRATAKTMAQEVGAKVTGSVSKKTDYVVAGADPGSKYTKAQSLGVTILDEAEFLRMM 673


>gi|119774653|ref|YP_927393.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
 gi|166216239|sp|A1S5R7|DNLJ_SHEAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119767153|gb|ABL99723.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
          Length = 681

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 257/718 (35%), Positives = 399/718 (55%), Gaps = 60/718 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I Q + E+  L  EI+ H+  YY    P I D+EYD L  +  A+   +P  A   +P+
Sbjct: 10  TIMQVKAEIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEYPQFA---EPD 66

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       +V+H  P LSL+  +N ED   F  R+          S  +  EP
Sbjct: 67  SPTQRVGGAALNKFEQVSHLKPMLSLDNAFNEEDFVAFDKRL-----TDKVGSQVYCAEP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  +++ Y  G    AA RGDG  GED+S  +R I ++P R+   +IP ++EVRGEV
Sbjct: 122 KLDGLAVSLIYRNGVLERAATRGDGAVGEDISVNMRTIKSVPLRLQGDDIPALVEVRGEV 181

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE- 248
           ++ +  F ALND   A G K + NPRNAA+G LR+L+ + IT  R L F+ + LG   + 
Sbjct: 182 FMPRAAFEALNDRARAKGDKLFVNPRNAAAGSLRQLD-SKITAERSLAFYAYALGVVQDD 240

Query: 249 -----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                + A      L+++   G PV+  V+       +++YY ++   R  L ++IDG+V
Sbjct: 241 NGADLVLAPTHKGQLERLTAFGLPVSKEVKLCEGLAEVMAYYADILKRRDELAFEIDGVV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++   Q+QLG  AR+PRW I+ KF  ++  T L  +D Q+GRTG +TPVARL+PV +
Sbjct: 301 IKVNDIEAQQQLGFVARAPRWAIAFKFPAQEEMTVLEGVDFQVGRTGAVTPVARLKPVFV 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN D I  L            +++GD V+++RAG+VIP++V  +V ER P
Sbjct: 361 GGVTVSNATLHNGDEIARL-----------GVKIGDTVIIRRAGDVIPQIV-AVVPERRP 408

Query: 424 D-AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           D AQ   FP  CP+C S V R      G+ VA  RC+GGL C AQ+ E +KHF SR A  
Sbjct: 409 DEAQDILFPDNCPVCGSLVER----IEGEAVA--RCSGGLFCEAQRREAIKHFASRKAMY 462

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+G+G + ++     E     +  PAD+F L      + +K+  +   G  S TNL  +I
Sbjct: 463 IDGMGDKVVEQLIDKE----LVESPADLFKL------NVSKLTMLERMGTKSATNLVAAI 512

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + +  +L +F+++LGIR VG   A +LAK++ S +          A  + D  +LI+V 
Sbjct: 513 EEAKTTTLPKFLYALGIREVGEATAANLAKHFRSLE----------AIRDADVDALIQVE 562

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQK 660
            VG ++AQ +  F+  P N+  ++AL+      P+I +   + +  +  +  V TGTL  
Sbjct: 563 DVGTVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIEKPSAD-AQPLLGQTWVLTGTLTS 621

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R +A+  +  LGA V+  +S+ T  ++ G+  GSKL KAQ+LG+ +++E   + L+
Sbjct: 622 LGRTEAKAKLEALGAKVAGSVSKNTHCVVAGEAAGSKLAKAQELGIPVLDEAGLIELI 679


>gi|320540519|ref|ZP_08040169.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
 gi|320029450|gb|EFW11479.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
          Length = 685

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 248/711 (34%), Positives = 402/711 (56%), Gaps = 54/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++++ L   + +H+  Y+    P + D+EYD L      +  A P+L  ++ P     ++
Sbjct: 6   EQINQLRASLRHHEYQYHVLDAPEVPDAEYDRLMCELRELESAHPELITADSPT---QRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G  +  +  +V H +  LSL+ +++ E    F  R+    +  D   + F  E K+DG  
Sbjct: 63  GAALLAAFDQVRHELLMLSLDNVFDEESFLAFYKRVQERLKISD--PLTFCCELKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G+ V AA RGDG +GE++++ +R I  IP R+   NIP  +EVRGEV++ +  
Sbjct: 121 VSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGANIPRRLEVRGEVFMPQAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQ 254
           F  +N E      K +ANPRNAA+G +R+L+P     R L FF +G+G  +  E+  +  
Sbjct: 181 FEQMNTEARRKNGKIFANPRNAAAGSIRQLDPRITANRPLTFFCYGVGLLEGGEL-PRSH 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L + R  G PVN+G R       ++++Y++++  R+ L +DIDG+V K+D+  LQ++
Sbjct: 240 FERLMQFRAWGLPVNDGARCCTGSDEVLAFYHQVEQDRAQLGFDIDGVVVKIDDIDLQEK 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW  + KF  ++  T + +I+ Q+GRTG +TPVARLEPV + G  ++NATLH
Sbjct: 300 LGFVARAPRWATAFKFPAQEQITLVREIEFQVGRTGAITPVARLEPVLVAGVTVSNATLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            +R+GD V+V+RAG+VIPKVV ++ + R  D +   FP  C
Sbjct: 360 NADEIERL-----------GLRIGDTVIVRRAGDVIPKVVGVLEDRRPQDTRAVVFPQHC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G + ++  
Sbjct: 409 PVCGSDVER----LEGEAVA--RCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKIIEQL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     ++ PAD+F L      S   +  +   G  S  NL +++ K R  +  RF+
Sbjct: 463 VEKE----YVKNPADLFRL------SANMLSGLDRMGPKSAQNLVNALEKSRQTTFARFL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA ++ S +               D  +L  VP VG+++AQ    
Sbjct: 513 YALGIREVGEATAANLAAHFGSLEKLYAA----------DIAALKEVPDVGEVVAQHTRH 562

Query: 615 FYQNPRN------ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           F     N      + +VE  +    P +   E+ + S    K +V TG+L ++ R  A++
Sbjct: 563 FLDEALNQKVIAELVSVEIGINWPVPVVVATEE-IDSPFAGKTVVLTGSLSQLSRDDAKD 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA +S  +S+KTD++I G+  GSKL KAQ+LG+++++E + L L++
Sbjct: 622 RLKVLGAKISGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEAELLRLIE 672


>gi|153826197|ref|ZP_01978864.1| DNA ligase [Vibrio cholerae MZO-2]
 gi|149740057|gb|EDM54226.1| DNA ligase [Vibrio cholerae MZO-2]
          Length = 669

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/708 (35%), Positives = 399/708 (56%), Gaps = 51/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L + +  H   YY    P I D+EYD L R    +  A P+L  S+ P+    ++
Sbjct: 6   QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK+DG  
Sbjct: 63  GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G    AA RGDG +GE+++  +R I +IP R+   + P  +EVRGEV++ K  
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253
           F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G  +  E+ A  
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  LQ+
Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATL
Sbjct: 299 RLGFVARAPRWAIAYKFPSQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   FP+ 
Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQS V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ 
Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L +F
Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A +LA+++LS +   Q                I VP VG ++A  ++
Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLL 561

Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+  + 
Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|297578580|ref|ZP_06940508.1| DNA ligase [Vibrio cholerae RC385]
 gi|297536174|gb|EFH75007.1| DNA ligase [Vibrio cholerae RC385]
          Length = 669

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++L+ L Q +  H   YY    P I D+EYD L R    +  A P+L  S+ P+    ++
Sbjct: 6   QKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK+DG  
Sbjct: 63  GGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G    AA RGDG +GE+++  +R I  IP R+   + P  +EVRGEV++ K  
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253
           F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G  +  E+ A  
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  LQ+
Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATL
Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   FP+ 
Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQS V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ 
Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L +F
Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A +LA+++LS +   Q                I VP VG ++A  + 
Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLQ 561

Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+  + 
Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|229525582|ref|ZP_04414987.1| DNA ligase [Vibrio cholerae bv. albensis VL426]
 gi|229339163|gb|EEO04180.1| DNA ligase [Vibrio cholerae bv. albensis VL426]
          Length = 669

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 251/708 (35%), Positives = 399/708 (56%), Gaps = 51/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++L+ L Q +  H   YY    P I D+EYD L R    +  A P+L  S+ P+    ++
Sbjct: 6   QKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK+DG  
Sbjct: 63  GGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G    AA RGDG +GE+++  +R I +IP R+   + P  +EVRGEV++ K  
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253
           F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G  +  E+ A  
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  LQ+
Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATL
Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   FP+ 
Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQS V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ 
Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L +F
Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A +LA+++LS +   Q                I VP VG I+A  + 
Sbjct: 512 LYALGIREVGEATAFNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVIVASHLQ 561

Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+  + 
Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|126668324|ref|ZP_01739283.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
 gi|126627241|gb|EAZ97879.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
          Length = 703

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/732 (34%), Positives = 398/732 (54%), Gaps = 67/732 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R  +  L   I+ H+  YY    P + D+EYD L R   A+   +P+LA +     P  +
Sbjct: 9   RDRVHQLRTTITDHNHHYYVLDDPQVPDAEYDRLFRGLQALEAEYPELATA---TSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK----------------- 120
           +G  +  S  +V H IP LSL+  ++ +DLR F  R+     +                 
Sbjct: 66  VGSAVETSFAEVIHRIPMLSLDNAFSADDLRDFDRRVRERLNRGNTAGEDSIREDSTAEE 125

Query: 121 -------KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI 173
                  K++ +I +  EPK+DG  +++ Y+ G+ V AA RGDG++GED++A IR I ++
Sbjct: 126 GSKEEDSKEERTIEYVCEPKLDGLAVSLHYQNGELVRAATRGDGYTGEDITANIRTIASV 185

Query: 174 PRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI 232
           P  L   + P+ +EVRGEVY+ +  F  LN  +   G K + NPRNAA+G LR+   +  
Sbjct: 186 PLTLRGGDFPQTVEVRGEVYMPRAGFDRLNQRLAGRGEKTFVNPRNAAAGSLRQKKSSVT 245

Query: 233 TRY-LNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
            R  L    + +  T E       +E LQ++   GF +N  +  A      +  Y  + +
Sbjct: 246 ARRPLEMCAYSVAVTDESALPPTHWEGLQQVSEWGFRINPEMSLAIGADQCLEAYEALMA 305

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R +LPY+IDG+V+KV+   LQ+QLG  +R+PRW I+ KF  ++  T +  ++ Q+GRTG
Sbjct: 306 KRDSLPYEIDGIVFKVNRLDLQQQLGFVSRAPRWAIAQKFPAQEELTVVESVEFQVGRTG 365

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVARL+PV +GG  ++NATLHN D ++ L           D+ +GD V ++RAG+VI
Sbjct: 366 AITPVARLKPVFVGGVTVSNATLHNMDEVRRL-----------DLHIGDTVFIRRAGDVI 414

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           PKVV ++ N+R  DA     P+ CP C S VV+      G+++A  RC+GGL C AQ+ E
Sbjct: 415 PKVVKVVQNKRPADAWVIELPAQCPACGSDVVQ----IEGEVIA--RCSGGLFCPAQRKE 468

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            ++H+ SR A +IEGLG + +D    S+     +   AD++ L +   T   ++      
Sbjct: 469 AIRHYASRKALDIEGLGDKWVDILVDSK----KVETIADLYRLCKADLTVLERM------ 518

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           GD S +NL  +I+  R   L RF+++LGIR VG   A+ LA Y+ S +  A+        
Sbjct: 519 GDKSASNLIAAIDASRQPLLWRFLYALGIREVGEATAKGLAGYFGSLEAIAEA------- 571

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
              D  +L  V  VG I+A  +  F++ P N   ++ L +       +     S  +  +
Sbjct: 572 ---DESALQAVSDVGPIVAGHLRSFFEQPHNQEILQNLTQAGVIWQTQEITAASMPLHGQ 628

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGT++++ R +A++ +  LGA V+  +S+KT  ++ G+  GSKL KAQQLGV++++
Sbjct: 629 TWVLTGTMEQMTRDQAKQKLEGLGAKVAGSVSKKTACVVAGEAAGSKLAKAQQLGVEVLS 688

Query: 711 EEQFLFLLQQYN 722
           E+  L LL+ ++
Sbjct: 689 EQGLLDLLRGHD 700


>gi|295697355|ref|YP_003590593.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912]
 gi|295412957|gb|ADG07449.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912]
          Length = 677

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 265/714 (37%), Positives = 402/714 (56%), Gaps = 63/714 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL +L +   YH   YY    P++ D+EYD   R    +    P+L     P+ P  ++
Sbjct: 12  EELRALIRRYDYH---YYVLDDPLVDDAEYDRCMRELVELEARHPELV---TPDSPTQRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
            G  + +  KV H  P LSL   ++  D+R+F  R+      +D   + +  E KIDG  
Sbjct: 66  SGAPSEAFAKVIHREPMLSLANAFSEGDVREFDRRVRAALPGED---VEYVCELKIDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKN 196
           I++RYE G+FV  A RGDG  GED++  +R I    RVL L +PE   +EVRGE Y+ K 
Sbjct: 123 ISLRYENGEFVQGATRGDGELGEDITRNLRTI----RVLPLRLPERVSVEVRGEAYMPKK 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG--LGKTSEIFA-- 251
            FL +N E    G + +ANPRNAA+G LR+L+P     R L+ +++   LG    +    
Sbjct: 179 VFLRVNRERDEAGEQAFANPRNAAAGSLRQLDPRVTARRGLSLWMYAAVLGPDGTVPGGP 238

Query: 252 ---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              +   E+L+ +  LGFPVN   R       +  + NE   +R+TLPYDIDG+V KV+ 
Sbjct: 239 GPFRTHEEILKWLDTLGFPVNPHRRVCRNLEEVFQFLNEGDRLRNTLPYDIDGMVIKVNN 298

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q +LG  A+SPRW +++KFA +QA TRLL I++ +GRTG++TP A  EPV + G  +
Sbjct: 299 LDQQNRLGATAKSPRWAMAYKFAPEQAETRLLTIEVSVGRTGVVTPTAVFEPVFLAGTTV 358

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHNED I+            RDIR+GD V+V++AGE+IP+VV +  + R  +   F
Sbjct: 359 SRASLHNEDLIR-----------ERDIRIGDIVVVEKAGEIIPEVVRVRADLRTGEEHIF 407

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           S P  CP C S +VR L  +      A RC     C AQ  E + HF SRDA NIEGLG+
Sbjct: 408 SMPKDCPACGSPLVR-LEEEV-----ALRCVNP-DCPAQIQEGIIHFASRDAMNIEGLGE 460

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +   ++ E    S+   AD++ L+R Q     ++      G  S  NL  +I + +  
Sbjct: 461 ALVAQLYR-EGLIHSV---ADLYELKREQLVPLERM------GAKSADNLLQAIERSKQN 510

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SLER +F LGIR++G + +R LA ++       +E++ ++  ++++   L++VP +G  +
Sbjct: 511 SLERLLFGLGIRYIGEKASRVLAAHF-------KEMDALMEASSEE---LLKVPDIGAKM 560

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           AQ+I  ++        +E L       +  G     V S +  K +V TGTL  + R +A
Sbjct: 561 AQSIRVYFGQESARRLIERLRAHGVNMVYRGAEAAPVPSRLAGKTVVLTGTLHAMGRREA 620

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           Q++V +LG   +  +SRKTDI+I G++PGSKL KA+QLGV+++NE+QFL +L++
Sbjct: 621 QDWVRRLGGKPTESVSRKTDIVIAGEDPGSKLVKARQLGVEVINEDQFLSILRE 674


>gi|309792382|ref|ZP_07686850.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6]
 gi|308225603|gb|EFO79363.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6]
          Length = 674

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 253/688 (36%), Positives = 373/688 (54%), Gaps = 49/688 (7%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           H+  YY    P + D+EYDAL R    +    P+L     P+ P  ++G  +     KV 
Sbjct: 20  HNYRYYVLDDPNVSDAEYDALMRELRHLEATHPELC---SPDSPTQRVGAPVTSQFGKVR 76

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H    LSL   ++  DL  +  R+ +      D  + + +EPKIDG  I++ Y  G+F  
Sbjct: 77  HPQAMLSLGNAFDEADLHAWRERVLKLLGA--DTPLAYVVEPKIDGLAISLTYRAGRFEL 134

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEVYISKNDFLALNDEM 205
            A RGDG  GEDVSA +R +  IP +L        IP  IEVRGEVY+   DF ALN  +
Sbjct: 135 GATRGDGEVGEDVSANLRTVRGIPLLLRTETPDTPIPTSIEVRGEVYMRSADFEALNKRL 194

Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
            + G K +AN RN+A+G LR+ +P     R L FF + +G    +    Q++ L  +R L
Sbjct: 195 ASSGEKIFANARNSAAGSLRQKDPAITANRPLRFFAYQVGPVEGVELTSQWQTLAYLRDL 254

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GFPVN   R+ + F  ++ Y     + R +L ++ DG+V K+D+F+ Q++LG   R PRW
Sbjct: 255 GFPVNRDARRFDDFAAVLDYCRAWMARRDSLEFEADGIVIKIDDFAQQRELGVVGRDPRW 314

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I+ KF  ++A+TRL  I + +GRTG+LTP A LEPV IGG  + NA+LHN DYI     
Sbjct: 315 AIAFKFPAREATTRLQAITVNVGRTGVLTPGAELEPVVIGGVTVRNASLHNADYI----- 369

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   RDIRVGD V VKRAG+VIP V+  I++ R    QP+SFP+ CP C + + R 
Sbjct: 370 ------AERDIRVGDYVTVKRAGDVIPYVIGPILSRRDGSEQPWSFPTTCPACGTALER- 422

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                G+  AA RC     C AQ + R++H+VSR A +I G+G++Q + F      A  I
Sbjct: 423 ---VEGE--AAWRCPNFGICPAQLVRRVEHYVSRGALDIVGIGEKQAELFVT----AGLI 473

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
              AD++ L           + + GFG   + NL  +I + +   L+R +  LGIR VG+
Sbjct: 474 ADVADLYALHMHH------FQGMEGFGPKKIANLITAIEESKTRPLDRLLVGLGIRFVGS 527

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A++LA  Y S       ++ I+A    D   L ++  +G ++A ++V+F+Q+P N   
Sbjct: 528 VAAQTLANQYGS-------LDAIMAATQAD---LEQIEGIGPVLAASVVDFFQHPENRAL 577

Query: 625 VEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           VE L        G   + + S+ +  K  V TGTL  + R +A E +   G  +S  +S+
Sbjct: 578 VEKLRAAGLTLTGGVPRQLQSQNLSGKTFVLTGTLPTLTREQAAEMILAHGGKLSESVSK 637

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           KT  ++ G + GSKL KA QLGV +++E
Sbjct: 638 KTSYVVAGASAGSKLAKATQLGVPVLDE 665


>gi|161831535|ref|YP_001596473.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331]
 gi|190359249|sp|A9NC33|DNLJ_COXBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161763402|gb|ABX79044.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331]
          Length = 670

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/711 (36%), Positives = 410/711 (57%), Gaps = 58/711 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  EI+ H+  YY  S+P I DS YD L    + +   +P+   +  P+ P  +
Sbjct: 8   QKRIERLRHEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPE---TITPSSPTQR 64

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G E  L +F+ V H IP LSL+ +++ + LR F  RI +  + K D    +  EPK+DG
Sbjct: 65  VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 121

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV + +
Sbjct: 122 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252
             F   N E    G K +ANPRNAASG LR+L+P     R L F+ +  GL K  + F K
Sbjct: 182 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   +Q
Sbjct: 241 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++NAT
Sbjct: 301 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D         ++ R  +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    PS
Sbjct: 361 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C + V++      G+ VA  RC GGL C AQ  E +KHF SR A +IEGLG + ++
Sbjct: 410 RCPVCHAEVIKP----EGEAVA--RCVGGLYCRAQLRESIKHFSSRRALDIEGLGDKLVE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F +        ++  DI  + + ++++ T +  +   G+ S  NL  +I K +  +L R
Sbjct: 464 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG   AR+LA+++        E++ ++  + +   +L  +  +G + A+ I
Sbjct: 514 FLYALGIRGVGDTTARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVAAENI 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668
             F+    N   +  L+      +G H   EK  V SEI  K  V TG L+ + R +A+E
Sbjct: 564 HAFFHQKNNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 619 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669


>gi|303258051|ref|ZP_07344059.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47]
 gi|331000674|ref|ZP_08324326.1| DNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859070|gb|EFL82153.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47]
 gi|329570827|gb|EGG52542.1| DNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 684

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 247/711 (34%), Positives = 387/711 (54%), Gaps = 45/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +  +  L +E+  H+  YY  + P + D  YD+L +    +   +P     + P  
Sbjct: 9   LEAVKLRMEKLAEELEKHNKAYYIDNAPTVSDEIYDSLFQELARLEKEYPQF---KSPVS 65

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           P  ++G  +   L KVTH++P LS+  E  +  +    F  R+ R  +   D +I +  E
Sbjct: 66  PTERVGATVQSELKKVTHAVPMLSIHTETDYTAQGAYDFDARVRRELELTPDQTIDYDCE 125

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I +RYE G  V AA RGDG++GEDV+A ++ I T+P  +    P+I EVRGEV
Sbjct: 126 LKFDGLAINLRYEDGVLVQAATRGDGYTGEDVTANVKTIKTLPLKVD-GFPKIFEVRGEV 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            + K  F  LN+E  AVG K +ANPRNAA+G LR+L+      R LNF+ +G G+ SE+ 
Sbjct: 185 IMHKEVFRKLNEEQEAVGAKLFANPRNAAAGSLRQLDSALTAKRNLNFYAYGYGEVSEMP 244

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A  Q  +L  ++  GFPV +      T   + +++ E+  IR  LP+DIDG+VYKV+ F+
Sbjct: 245 ADTQSGLLDYLKSKGFPVISNRIVVQTPEQLEAFHLEVARIRHDLPFDIDGVVYKVNSFA 304

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            QKQLG  +R PRW ++HK+  ++  T++LDI +Q+GRTG LTPVARL+PV +GG  I+N
Sbjct: 305 RQKQLGFVSREPRWAVAHKYPPEEVQTQVLDITVQVGRTGKLTPVARLKPVFVGGTTISN 364

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +LHNE++++ +            I++GD V+V RAG+VIP++V +I   R  DA+ F  
Sbjct: 365 VSLHNEEFLQNM-----------GIKIGDTVVVHRAGDVIPEIVRVIPELRPKDARDFVM 413

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P FCP+C S   ++   K         C+GGL C AQ+ + + HFVSR A  I+G+G++ 
Sbjct: 414 PEFCPVCGSHAYKEDGEKD------RHCSGGLFCRAQRAQSILHFVSRKAMGIDGIGEKL 467

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +   + +     +   ADI+ L      +  K+  +   G  S   L  SI   +  +L
Sbjct: 468 AEQLIEHD----LVTTVADIYRL------TVDKLVGLDRMGQKSAEKLVASIEASKKTTL 517

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ERF++++ I  VG   AR+LA ++ + +   +               L  V  +G   A+
Sbjct: 518 ERFLYAISIPEVGEATARNLASHFGALKPLEEA----------SLEQLQEVEDIGPSGAE 567

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I+ F+  P NI  +  L+ + V    G         +     V TGTL  + R +A + 
Sbjct: 568 NILHFFAEPANIAVINDLMDRGVVWEEGTGTSGQELPLNGLTFVLTGTLPTLSRDEASDI 627

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + + G  VS  +S+KT  ++ G++ GSKL KA+ LGV I++E +   ++ Q
Sbjct: 628 IRKAGGKVSGSVSKKTSYVLAGESAGSKLAKAEALGVNIIDEPELFKMINQ 678


>gi|254226208|ref|ZP_04919802.1| DNA ligase [Vibrio cholerae V51]
 gi|125621244|gb|EAZ49584.1| DNA ligase [Vibrio cholerae V51]
          Length = 669

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L + +  H   YY    P I D+EYD L R    +  A P+L  S+ P+    ++
Sbjct: 6   QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK+DG  
Sbjct: 63  GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G    AA RGDG +GE+++  +R I +IP R+   + P  +EVRGEV++ K  
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253
           F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G  +  E+ A  
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  LQ+
Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATL
Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   FP+ 
Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTH 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQS V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ 
Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L +F
Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A +LA+++LS +   Q                I VP VG ++A  + 
Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLQ 561

Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+  + 
Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|238897965|ref|YP_002923645.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|257096312|sp|C4K4K4|DNLJ_HAMD5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|229465723|gb|ACQ67497.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 702

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 251/731 (34%), Positives = 406/731 (55%), Gaps = 73/731 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++++ L   + +H+  Y+    P I D+EYDAL  +       +P+L    +P+ P  K+
Sbjct: 6   EKINQLRDVLKHHEYLYHVNDAPEITDAEYDALLEKLREWESQYPELM---NPDSPTQKV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ------------------- 119
           G   + +   VTH +P LSL+ +++ +    F  R+    +                   
Sbjct: 63  GASPSTAFKPVTHQVPMLSLDNVFDEKGFLAFNKRVSERLEAESSAQKASLNPLVRDSDQ 122

Query: 120 -----KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
                K    ++ F  E K+DG  +++ YEKG+   AA RG+G  GE+++  IR I +IP
Sbjct: 123 KNRSEKNVQEALTFCCELKLDGLAVSLIYEKGELTQAATRGNGFQGENITHNIRTIQSIP 182

Query: 175 -RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDI 232
            R+    +P+ IE+RGEVY+ +  F  LN +  A   K ++NPRNAA+G LR+L+P    
Sbjct: 183 LRLKGKALPQRIEIRGEVYMPQAGFEKLNKQARANHEKIFSNPRNAAAGSLRQLDPHITA 242

Query: 233 TRYLNFFVHGLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R LNFF +G+G     +  +   + L +++  G PV++ +        ++++Y E+   
Sbjct: 243 QRPLNFFCYGVGLLEGGVLPQSHIQRLMQLKAWGLPVHDRITLCTGAEQVMAFYQEIAQA 302

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R+TL +DIDG+V KVD+  LQ++LG  A++PRW  + KF  ++ +T++L ++ Q+GRTG 
Sbjct: 303 RATLGFDIDGIVIKVDDVLLQEKLGFLAKAPRWATAFKFPAQEKTTQVLGVEFQVGRTGA 362

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           LTPVARLEPV +GGAL++NA LHN D I  L            +R+GD V+V+RAG+VIP
Sbjct: 363 LTPVARLEPVELGGALVSNANLHNADEIARL-----------GLRIGDTVVVRRAGDVIP 411

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           ++V++I+  R  +     FP  CPIC+S   R      G+ V   RCTGGL C AQ+ E 
Sbjct: 412 QIVNVIIESRPQNTVEIIFPHHCPICKSVAKR----IEGEAVI--RCTGGLFCPAQRKEA 465

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           LKHFV+R A +IEGLG + +      +     ++ PAD+F L      ++ K+ ++    
Sbjct: 466 LKHFVARRALDIEGLGDKIIHQLVDKK----YVQNPADLFHL------TSEKLLSLKRMR 515

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL +S+ K +  +  RF+++LGIR VG   A +LA Y+            +    
Sbjct: 516 EKSAQNLLNSLKKSQKTTFARFLYALGIREVGETTAANLALYF----------GQLDLLR 565

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKNVSSEIE 648
             D  +L +VP VG+++A+ +V+F+ N  +   I A+E++L    P      +  +    
Sbjct: 566 KADIETLKKVPDVGEVVAKNLVDFFGNEHHQQVISALESVLDWPDPE---PIEKPNHPFR 622

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           +K +V TG+L    R   + ++  LGA VS  +S+KTD +I G+NPGSK +KA++ G+KI
Sbjct: 623 DKTVVLTGSLNAFTRDDLKAHLISLGAKVSGSVSKKTDFLIAGENPGSKAQKAEKSGIKI 682

Query: 709 MNEEQFLFLLQ 719
           MNE + +  L+
Sbjct: 683 MNEPELIEFLK 693


>gi|229529935|ref|ZP_04419325.1| DNA ligase [Vibrio cholerae 12129(1)]
 gi|229333709|gb|EEN99195.1| DNA ligase [Vibrio cholerae 12129(1)]
 gi|327483693|gb|AEA78100.1| DNA ligase [Vibrio cholerae LMA3894-4]
          Length = 669

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/708 (35%), Positives = 397/708 (56%), Gaps = 51/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L + +  H   YY    P I D+EYD L R    +  A P+L  S+ P+    ++
Sbjct: 6   QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +   V H IP LSL+  ++  +L  F  R+    Q    ++  F  EPK+DG  
Sbjct: 63  GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHSA--FCCEPKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G    AA RGDG +GE+++  +R I  IP R+   + P  +EVRGEV++ K  
Sbjct: 121 VSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253
           F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G  +  E+ A  
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+   +++  G P+    +   +   + ++Y ++   R  L Y+IDG+V KVD+  LQ+
Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQLQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATL
Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   FP+ 
Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQS V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ 
Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L +F
Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A +LA+++LS +   Q                I VP VG ++A  + 
Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLQ 561

Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+  + 
Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|317495223|ref|ZP_07953593.1| DNA ligase [Gemella moribillum M424]
 gi|316914645|gb|EFV36121.1| DNA ligase [Gemella moribillum M424]
          Length = 663

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/711 (35%), Positives = 406/711 (57%), Gaps = 54/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  ++E+  L   ++ +   YY    P I D+EYD L ++ + +   +P+       N 
Sbjct: 1   MEHIKEEIFKLVALLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEQEYPEFILD---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +     KV H +P LSL   ++IEDLR F +RI +      D+SI +  E K
Sbjct: 58  PTQRVGDRVLDEFEKVIHKVPMLSLSNTFSIEDLRDFDSRISKL---SSDDSIEYICELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+I YE GK V AA RGDG  GE+V+  I+ I +IP+  +L   +  EVRGEVY+
Sbjct: 115 IDGLAISINYENGKLVSAATRGDGMVGENVTENIKTIFSIPK--TLKTKKSFEVRGEVYL 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251
            K  F  LN E        +ANPRNAA+G LR+L+ + IT  R L+ F++ +     I  
Sbjct: 173 PKKSFELLNKEREENNEVLFANPRNAAAGSLRQLD-SKITAKRRLSAFIYSVVGDENI-- 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   L     +G PVN   +   T   +V Y    +  +  LPY+IDG+V KV+ +SL
Sbjct: 230 NSQKMALTVAADVGLPVNPNFKLCKTIDEVVDYIMYWEEHKQDLPYEIDGIVIKVNSYSL 289

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+++G   +SPRW  ++KF E++ +T+LLDI++ +GRTGI+TPVA L P+NI G+ ++ A
Sbjct: 290 QEEIGSTQKSPRWATAYKFPEEELATKLLDIELSVGRTGIITPVAVLNPINISGSTVSKA 349

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN+D I  L           DI +GD V+VK+AGE+IPKVV ++   R  +++ +  P
Sbjct: 350 SLHNKDIIDEL-----------DIHIGDMVVVKKAGEIIPKVVRVVEELRLANSEKYVMP 398

Query: 432 SFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           + CP C+S+   ++ +P T       RC     C  Q + ++ HF SR+A NIEGLG + 
Sbjct: 399 NICPSCESKTFTKEGDPFT-------RCLNP-DCPEQNIRKIIHFASREALNIEGLGDKV 450

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   ++       I+   D+F+L R +     ++      GD SV NL ++I   +  SL
Sbjct: 451 VATLYEKG----IIKHTIDLFSLDRNKLVELERM------GDKSVDNLLNAIENSKQSSL 500

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ IF+LGI +VG +  + LA+YY +  NF++   +           L+ +P +G I A+
Sbjct: 501 DKVIFALGILNVGKKAGKILAEYYKNLTNFSKATVD----------ELLELPDIGLITAE 550

Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +IV++  N  N+  +  L++  ++P      KN+ +    K +V TG L ++ R++A+EY
Sbjct: 551 SIVDYLSNDNNLRFINELIEIGMNPQYEIQNKNIDNIFSGKTIVLTGKLVELTRNEAKEY 610

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + + GA V+  ++ KTD +I G+  GSKL KA+QLG+++++E++F+ ++++
Sbjct: 611 LERFGAKVTGSVTSKTDYVIAGEKAGSKLAKAEQLGIQVLSEDEFIDIMKE 661


>gi|264678823|ref|YP_003278730.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
 gi|262209336|gb|ACY33434.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
          Length = 708

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/717 (35%), Positives = 396/717 (55%), Gaps = 52/717 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E    ++++L  ++      YY    P + D EYD + ++ +A+  A+P L     P+ P
Sbjct: 27  ESVTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAYPALV---TPDSP 83

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK--FITRIYR-FWQKKDDNSIFFTLE 131
             ++ G +   L  V H++P LS++   + E      F  R+ +     +   +I +  E
Sbjct: 84  TQRVIGAVLDGLTPVRHAVPMLSIQTETDNEATGAIAFDQRVRKELGLDESAAAIEYVAE 143

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRG 189
           PK DG  + +RYE G+ V A  RGDG  GEDV+  IR I  IP  LS   ++P ++EVRG
Sbjct: 144 PKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLTLSAGRDVPPVVEVRG 203

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV+++K D   LN    A G K +ANPRNAA+G +R+L+      R L+FF +GLG+ + 
Sbjct: 204 EVHMAKADLDKLNARQQAAGAKTFANPRNAAAGSVRQLDSNIAAQRPLSFFAYGLGEITP 263

Query: 249 IFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               G      Y MLQ ++  GFPV   V  A     +V+++  + + R+ LPY+IDG+V
Sbjct: 264 PQQGGPDFGTHYAMLQTLKSWGFPVAPQVSIALGASELVAFHERIGAERANLPYEIDGVV 323

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV+  +LQ+QLG ++R PRW ++HK+  ++  T +  ID+Q+GRTG LTPVARL PV +
Sbjct: 324 YKVNSLALQRQLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGKLTPVARLAPVQV 383

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++TNATL N   I+            + +RVGD+V+V+RAG+VIP+VV  +  ER  
Sbjct: 384 GGVVVTNATLSNLFDIR-----------KKGVRVGDQVIVRRAGDVIPEVVGRVPGERPA 432

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               F  P  CPIC S VVR+      K  A HRCTGGL C AQ+ E + HF  R A +I
Sbjct: 433 YVPNFRMPKTCPICGSEVVRE------KGEANHRCTGGLFCGAQRKEAILHFAHRRAMDI 486

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG + +D    ++     +R+  D++ L        + +  +    + S  N+  ++ 
Sbjct: 487 EGLGDKLVDQLVDAQ----VVRVLPDLYRL------GLSSLAALDRMAEKSAQNVLAALE 536

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K ++ +L+RF+F LGIR+VG   AR LAK++        +++ I+  + ++   L++V  
Sbjct: 537 KSKSTTLQRFLFGLGIRNVGESTARDLAKHF-------GKLDAIMDASVEE---LLQVKD 586

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           VG ++A +I  F+  P N   VE L    V    G   +     +    +V TGTL  + 
Sbjct: 587 VGPVVADSIHTFFAQPHNREVVEQLRACGVHWEEGEPAEKAPQILAGLTVVLTGTLPTLG 646

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R  A++ +   GA VS  +S+KT  ++ G   GSKL KA++LGV +++E   L LL+
Sbjct: 647 RDAAKDMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLALLR 703


>gi|114776845|ref|ZP_01451888.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1]
 gi|114552931|gb|EAU55362.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1]
          Length = 670

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 248/707 (35%), Positives = 391/707 (55%), Gaps = 59/707 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++  H+  YY    P+I D+EYD L R  +++     +L      + P   +G   +
Sbjct: 14  LRSQLREHNYRYYILDAPVISDAEYDRLLRELESLE---AELGEPVPADSPTRTVGAPPS 70

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                 TH    LSL   ++  ++  F+ RI    +     ++ F +EPK+DG  + +RY
Sbjct: 71  QVFTTRTHGEALLSLANAFSAGEVEAFVRRI---GETLPATTLSFIVEPKVDGLAVNLRY 127

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEVRGEVYISKNDFL 199
           E+G    AA RGDG +GEDV+  +R I  IP    +V  + +P ++EVRGE+Y+S+  F 
Sbjct: 128 EQGSLTIAATRGDGTTGEDVTDNVRTIGDIPWQLKQVDGIELPTVLEVRGEIYMSREAFA 187

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258
           ALN    A G +P+ANPRNAA+G LR+L+     +R L FF +G G      A  Q ++L
Sbjct: 188 ALNARQDAEGAQPFANPRNAAAGSLRQLDARVTASRRLGFFAYGAGLGGRAIASSQSQLL 247

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +++   GF V      A+   G+++ Y +++  R  +PY+IDG+VYK+DEF+LQ ++G  
Sbjct: 248 ERLAGFGFAVQK-TACADDLEGLLATYQQLQQQRPDMPYEIDGVVYKLDEFALQDRMGAV 306

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           ARSPRW I+HKF  ++ +T + DI  Q+GRTG++TPVA +EPV +GG +++ ATLHN D 
Sbjct: 307 ARSPRWAIAHKFPAEEVTTTVKDIIWQVGRTGVITPVADMEPVAVGGVVVSRATLHNIDE 366

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV---VDIIVNERHPDAQPFSFPSFCP 435
           +K            + +  G RV+V+RAG+VIP+V   VD+      P A     P+ CP
Sbjct: 367 LK-----------RKQVYAGARVIVRRAGDVIPEVVRAVDVDAQAMMPKA-----PAQCP 410

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C + + R      G++  A RC+GGL+CSAQ  ERL+HFVSR A +IEG+G + +    
Sbjct: 411 VCGASLFR----LEGEV--AIRCSGGLSCSAQLTERLRHFVSRGAMDIEGMGDKLIARLV 464

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   +   AD++            +    G G+  +TNL  SI + +   L RF+ 
Sbjct: 465 DEG----CLNDIADLYEF------DYASLHEWQGMGEKKITNLQLSIERSKQRPLARFLH 514

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIRHVG+  A +LA ++   +   Q           D  +L+ VP VG  +A +I+ F
Sbjct: 515 ALGIRHVGSATAAALATHFADLELLMQA----------DEEALLAVPDVGPEVAGSILSF 564

Query: 616 YQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++   N   ++ LL   V+P   + +++    +  K +V TG+   I+R  AQE +  LG
Sbjct: 565 FREQHNRDVIDRLLAAGVTPEAPQQQQH-DHPLAGKTVVLTGSFVAIKRRTAQEQLRALG 623

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
              S  +S++TD++I G+  GSKL KA++LG+++ +E Q L  L  +
Sbjct: 624 VRPSGSVSKQTDLVIAGEKAGSKLTKARELGIEVADEAQLLSWLNWH 670


>gi|160875869|ref|YP_001555185.1| DNA ligase, NAD-dependent [Shewanella baltica OS195]
 gi|190359285|sp|A9L5Z1|DNLJ_SHEB9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160861391|gb|ABX49925.1| DNA ligase, NAD-dependent [Shewanella baltica OS195]
 gi|315268060|gb|ADT94913.1| DNA ligase, NAD-dependent [Shewanella baltica OS678]
          Length = 685

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 255/716 (35%), Positives = 394/716 (55%), Gaps = 63/716 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  ++
Sbjct: 12  EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P     ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 72  SPT---QRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRV-----TDKVGEVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG-- 244
           GE ++ K  F ALND   A   K + NPRNAA+G LR+L+ + IT  R L F+ + LG  
Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLD-SKITAARSLAFYAYALGVV 242

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              S   AK  +E LQ+++  G P+++ ++       +  YY ++ + RS L ++IDG+V
Sbjct: 243 EPDSHPLAKTHFEQLQQLKSWGLPISSEIKVCAELSQVYDYYKDILTRRSDLAFEIDGVV 302

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +
Sbjct: 303 MKVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 362

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN D I  L            I+VGD V+++RAG+VIP++V I+   R  
Sbjct: 363 GGVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPE 411

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            A    FP  CP+C S V R      G+ VA  RC+GGL C AQ+ E +KHF SR A +I
Sbjct: 412 TATDIVFPHNCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDI 465

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I 
Sbjct: 466 DGMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIE 515

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIR VG   A +LA ++ S    A  +  +          L  V  
Sbjct: 516 AAKTTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTEVED 565

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGT 657
           VG ++AQ +  F+  P N+  ++AL+     + G H   + +       ++ +  V TGT
Sbjct: 566 VGAVVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSADAQPLKGQTWVLTGT 620

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           L ++ R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+M+E++
Sbjct: 621 LNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676


>gi|299529801|ref|ZP_07043234.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
 gi|298722215|gb|EFI63139.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
          Length = 708

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/717 (35%), Positives = 396/717 (55%), Gaps = 52/717 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E    ++++L  ++      YY    P + D EYD + ++ +A+  A+P L     P+ P
Sbjct: 27  ESVTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAYPALV---TPDSP 83

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK--FITRIYR-FWQKKDDNSIFFTLE 131
             ++ G +   L  V H++P LS++   + E      F  R+ +     +   +I +  E
Sbjct: 84  TQRVIGAVLDGLTPVRHAVPMLSIQTETDNEATGAIAFDQRVRKELGLDESAAAIEYVAE 143

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRG 189
           PK DG  + +RYE G+ V A  RGDG  GEDV+  IR I  IP  LS   ++P ++EVRG
Sbjct: 144 PKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLTLSAGRDVPPVVEVRG 203

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV+++K D   LN    A G K +ANPRNAA+G +R+L+      R L+FF +GLG+ + 
Sbjct: 204 EVHMAKADLDKLNARQQAAGAKTFANPRNAAAGSVRQLDSNIAAQRPLSFFAYGLGEITP 263

Query: 249 IFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               G      Y MLQ ++  GFPV   V  A     +V+++  + + R+ LPY+IDG+V
Sbjct: 264 PEQGGPDFGTHYAMLQTLKSWGFPVAPQVSIALGASELVAFHERIGAERANLPYEIDGVV 323

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV+  +LQ+QLG ++R PRW ++HK+  ++  T +  ID+Q+GRTG LTPVARL PV +
Sbjct: 324 YKVNSLALQRQLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGKLTPVARLAPVQV 383

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++TNATL N   I+            + +RVGD+V+V+RAG+VIP+VV  +  ER  
Sbjct: 384 GGVVVTNATLSNLFDIR-----------KKGVRVGDQVIVRRAGDVIPEVVGRVPGERPA 432

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               F  P  CPIC S VVR+      K  A HRCTGGL C AQ+ E + HF  R A +I
Sbjct: 433 YVPNFRMPKTCPICGSEVVRE------KGEANHRCTGGLFCGAQRKEAILHFAHRRAMDI 486

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG + +D    ++     +R+  D++ L        + +  +    + S  N+  ++ 
Sbjct: 487 EGLGDKLVDQLVDAQ----VVRVLPDLYRL------GLSSLAALDRMAEKSAQNVLAALE 536

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K ++ +L+RF+F LGIR+VG   AR LAK++        +++ I+  + ++   L++V  
Sbjct: 537 KSKSTTLQRFLFGLGIRNVGESTARDLAKHF-------GKLDAIMDASVEE---LLQVKD 586

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           VG ++A +I  F+  P N   VE L    V    G   +     +    +V TGTL  + 
Sbjct: 587 VGPVVADSIHTFFAQPHNREVVEQLRACGVHWEEGEPAEKAPQILAGLTVVLTGTLPTLG 646

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R  A++ +   GA VS  +S+KT  ++ G   GSKL KA++LGV +++E   L LL+
Sbjct: 647 RDAAKDMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLALLR 703


>gi|304411949|ref|ZP_07393560.1| DNA ligase, NAD-dependent [Shewanella baltica OS183]
 gi|307303283|ref|ZP_07583038.1| DNA ligase, NAD-dependent [Shewanella baltica BA175]
 gi|304349809|gb|EFM14216.1| DNA ligase, NAD-dependent [Shewanella baltica OS183]
 gi|306913643|gb|EFN44065.1| DNA ligase, NAD-dependent [Shewanella baltica BA175]
          Length = 685

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 255/716 (35%), Positives = 393/716 (54%), Gaps = 63/716 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  ++
Sbjct: 12  EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P     ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 72  SPT---QRVGGLALAKFDQITHPKPMLSLDNAFDEADFSAFHKRV-----TDKVGEVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG-- 244
           GE ++ K  F ALND   A   K + NPRNAA+G LR+L+ + IT  R L F+ + LG  
Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLD-SKITAARSLAFYAYALGVV 242

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              S   AK  +E LQ+++  G PV++ ++       +  YY ++ + R  L ++IDG+V
Sbjct: 243 EPDSHPLAKTHFEQLQQLKSWGLPVSSEIKVCAELSQVYDYYKDILTRRGDLAFEIDGVV 302

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++   Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +
Sbjct: 303 MKVNDIDQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 362

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN D I  L            I+VGD V+++RAG+VIP++V I+   R  
Sbjct: 363 GGVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPE 411

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            A    FP  CP+C S V R      G++VA  RC+GGL C AQ+ E +KHF SR A +I
Sbjct: 412 TATDIVFPHNCPVCGSLVER----LEGEVVA--RCSGGLFCEAQRKEAIKHFASRKALDI 465

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I 
Sbjct: 466 DGMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIE 515

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIR VG   A +LA ++ S    A  +  +          L  V  
Sbjct: 516 AAKTTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTEVED 565

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGT 657
           VG ++AQ +  F+  P N+  ++AL+     + G H   + +       ++ +  V TGT
Sbjct: 566 VGTVVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSAEAQPLKGQTWVLTGT 620

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           L ++ R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+M+E++
Sbjct: 621 LNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676


>gi|332529208|ref|ZP_08405172.1| DNA ligase [Hylemonella gracilis ATCC 19624]
 gi|332041431|gb|EGI77793.1| DNA ligase [Hylemonella gracilis ATCC 19624]
          Length = 738

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/744 (35%), Positives = 401/744 (53%), Gaps = 91/744 (12%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           ++ +H   YY    P I D+EYD L +   AI  A P+L     P+ P  ++ G++   L
Sbjct: 31  QLHHHAHRYYVLDAPEIPDAEYDRLFQELQAIEAAHPEL---RTPDSPTQRVIGQVLDGL 87

Query: 87  FKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKDDNS-IFFTLEPKIDGTMITIRY 143
             V H++P LS+  E     E  R F TR+ +     +  S + +  E K DG  I +RY
Sbjct: 88  LPVRHAVPMLSIDTETDTTPEGARAFDTRVRKALGLGEGASPVEYAAELKFDGLAINLRY 147

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIP-------------------- 182
           E+G  V AA RGDG +GEDV+  IR I  IP R+L+  +P                    
Sbjct: 148 ERGVLVQAATRGDGETGEDVTQNIRTINQIPLRLLAPTLPAARGSLPPSPSNAQDALEPG 207

Query: 183 ------------------EIIEVRGEVYISKNDFLALND---EMIAVG---RKPYANPRN 218
                             E++EVRGEVY+ ++DF ALN+   E IA G    K + NPRN
Sbjct: 208 VRFALGLPGGETMTSWPPEVLEVRGEVYMRRDDFEALNERQREKIAAGAKGEKTFINPRN 267

Query: 219 AASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276
            A+G +R+L+P     R L+F+ +GLG+           +++     +G PV        
Sbjct: 268 TAAGAVRQLDPAMAAQRPLSFYAYGLGEARGWTLPATHGQVMDAFVAMGLPVCEHRALGA 327

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
               +V ++  M ++R +LP+DIDG+VYKV+  +LQ+QLG ++R PRW ++HK+  ++  
Sbjct: 328 GAEALVDFHARMGALRDSLPFDIDGVVYKVNSLALQQQLGFKSREPRWAVAHKYPAQEML 387

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           T +  I++Q+GRTG LTPVA+L PV +GG  +TNATLHNE     L+A  K      D+R
Sbjct: 388 TTVQAIEVQVGRTGKLTPVAKLAPVFVGGVTVTNATLHNE-----LEARRK------DVR 436

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           VGD V+V+RAG+VIP+VV ++ ++R P A  F+ P+ CP+C S  VR+         A H
Sbjct: 437 VGDTVIVRRAGDVIPEVVGVLPDKRPPGAPEFTMPTSCPVCGSAAVREEGE------ADH 490

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RCTGGL CSAQ+ + L HF  R A +IEGLG + +D     E     ++   D++   R 
Sbjct: 491 RCTGGLFCSAQRKQALLHFAQRRAMDIEGLGDKLVDQLVDGE----VVKTLPDLY---RL 543

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
             TS   +E +    + S  N+ D++ K +  +L RF++ LGIRHVG   A+ LA+++  
Sbjct: 544 GLTSLAALERM---AEKSAQNIVDALQKSKQTTLPRFLYGLGIRHVGESTAKDLARHF-- 598

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPS 635
                 +++ I+    +   +L+  P VG ++AQ+I  F++   N   VE L    V  +
Sbjct: 599 -----GQLDAIMDAGVE---ALMEAPDVGPVVAQSIRTFFEQAHNREVVEQLRACGVQWA 650

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
            G         +  +  V TGTL  + R +A+E +   GA V+  +S+KT  ++ G+  G
Sbjct: 651 EGEPAPRALLPLAGQTFVLTGTLPTLSREEAKEMLEAAGAKVAGSVSKKTSYVVAGEEAG 710

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKL+KA++LGV +++E +   LL+
Sbjct: 711 SKLDKARELGVPVIDEAKMQALLK 734


>gi|169825829|ref|YP_001695987.1| DNA ligase [Lysinibacillus sphaericus C3-41]
 gi|254781361|sp|B1HTW6|DNLJ_LYSSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168990317|gb|ACA37857.1| DNA ligase [Lysinibacillus sphaericus C3-41]
          Length = 667

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/716 (35%), Positives = 405/716 (56%), Gaps = 61/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ   EL+ L  E  Y    YY   KP++ DS YD L     A+  A P L     P+ 
Sbjct: 4   IEQRIAELNKLLHEYGY---AYYVLDKPVVADSVYDQLLHELIALEEANPSLIF---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KVTH  P LSL   +N  DL++F  ++    ++   +   +  E K
Sbjct: 58  PTQRVGGTVVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKV----RQAIGDHFSYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+++YE G FV  A RGDG  GE+++A ++ I  IP  L L  P  IEVRGE Y+
Sbjct: 114 IDGLAISLKYENGVFVQGATRGDGVVGEEITANLKTIHAIP--LRLKEPITIEVRGEAYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA- 251
            K  F  LN +    G + +ANPRNAA+G LR+L+P    +R L+ F++ +G   EI+  
Sbjct: 172 PKKSFEKLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEIYGI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G  EML  +  LGFP N   ++ +T   ++++       R  L Y+IDG+V KVD ++ 
Sbjct: 232 DGHAEMLDYLEDLGFPSNKERQRCSTIEEVMAFIEHWTENRPHLAYEIDGIVIKVDRYAQ 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  A+SPRW I++KF  ++  T LLDID+ +GRTG++TP A L PV + G  +  A
Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +DIR+GD V++++AG++IP+VV +++ +R  ++ PF  P
Sbjct: 352 SLHNEDLIR-----------DKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPENSVPFEMP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S ++R      G++  A RC    AC AQ  E +K+FVSR+A NI+GLG + +
Sbjct: 401 KNCPVCDSELIR----IEGEV--ALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +++     I   +D++ L   Q     ++      G+ S TNL ++I   +  S+E
Sbjct: 454 EQLLRAD----LIHDVSDLYHLTIEQLVELERM------GEKSATNLVNAIQASKENSME 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  LGIRHVG + A+ +++ + S +        ++A   +    L+ +  +GD +A +
Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEQFGSME-------AVMAATEE---QLVAIYEIGDKMASS 553

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQRHKA 666
           +VE++ N      +E  L EV  ++    K V   + +     K +V TG L+++ R++A
Sbjct: 554 LVEYFSNDDARAVIER-LAEVGVNMTFKGKKVEVVVGDNPFAGKTIVLTGKLEQLTRNEA 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  + +LG  V+  +S+KTD++I G++ GSKL KA+QLG+++ NE+    L++Q N
Sbjct: 613 KAKIEELGGTVTGSVSKKTDLVIAGEDAGSKLAKAEQLGIEVWNEDN---LIEQLN 665


>gi|148269959|ref|YP_001244419.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1]
 gi|170288644|ref|YP_001738882.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2]
 gi|190359298|sp|A5IKX0|DNLJ_THEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781442|sp|B1LA51|DNLJ_THESQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147735503|gb|ABQ46843.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1]
 gi|170176147|gb|ACB09199.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2]
          Length = 688

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/705 (36%), Positives = 395/705 (56%), Gaps = 51/705 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E+  L +EI YH+  YY  + P+I D EYD L RR   +   +P+L     P+ P  ++
Sbjct: 12  EEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELERMYPELV---TPDSPTQRV 68

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++      V HS+P LSL+  +N E++ +F  R+ +  Q+ +   + +  E KIDG  
Sbjct: 69  GGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKTLQEAE---VEYVAELKIDGVS 125

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I +RYE GKFV  A RGDG  GEDVS  ++ + +IP  L L  P  +EVRGE+Y+  ++F
Sbjct: 126 IALRYENGKFVLGATRGDGIEGEDVSENVKTVRSIP--LRLRKPVTVEVRGEIYMPVDEF 183

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             LNDE    G  P+ANPRNAA+G LR+LN   +  R L+ F++ +        K Q+E 
Sbjct: 184 KRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSFIYYVVHPENYGLKTQWEA 243

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ ++ LGF VN   +       ++ Y+ E +  +  L Y +DG+V KV+ F  Q+ LGE
Sbjct: 244 LQFLKELGFKVNPHSKLCKNIQEVIDYWREWEERKKELDYWVDGVVVKVNRFDFQRILGE 303

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +++PRW I+ KF  +QA TR+LD+ IQ+GRTG+LTPVA LEPV + G ++  A+LHN +
Sbjct: 304 TSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELEPVQLAGTIVKRASLHNFE 363

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI+            +DIR+GD V V++AG +IP++V  I   R    +    P  CP+C
Sbjct: 364 YIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGSEKEIKPPDKCPVC 412

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
             +V + L+P+      A RC     C A+    L+  VSR+A +IEGLG++ +D     
Sbjct: 413 GGKVGK-LDPEE----VALRCLNP-HCPAKLKRALRTLVSREALDIEGLGEKLIDRLVD- 465

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  ++  ADIF L     T     +   G G  ++  +   I + +   L + I  L
Sbjct: 466 ---AGLVKDIADIFYL-----TPFDLAQLGPGIGQRTIAKILQEIEEAKKRPLHKLITGL 517

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI  VG + A+ LA+++ S +  A          +  + +L  +P +G  IA++IVE+++
Sbjct: 518 GIPMVGQKTAKILAEHFKSLEAIA----------DASYETLKDIPGIGPEIAKSIVEYFR 567

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQRHKAQEYVTQLGA 675
           NP+    +E L K     +   E+ +  +I  K L F  TGTL+   R +  E+  +LGA
Sbjct: 568 NPKTREIIEKLKK---AGVKLEERVMKLDI-LKGLTFAVTGTLKNFTREEIVEFFEKLGA 623

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V   +SR TD +IVG+NPGSK EKA+ L VK M+EE+FL  +++
Sbjct: 624 KVVNSVSRNTDYLIVGENPGSKYEKAKMLKVKTMSEEEFLEFVRK 668


>gi|183179445|ref|ZP_02957656.1| DNA ligase [Vibrio cholerae MZO-3]
 gi|183012856|gb|EDT88156.1| DNA ligase [Vibrio cholerae MZO-3]
          Length = 669

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L + +  H   YY    P I D+EYD L R    +  A P+L  S+ P+    ++
Sbjct: 6   QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK+DG  
Sbjct: 63  GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G    AA RGDG +GE+++  +R I +IP R+   + P  +EVRGEV++ K  
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253
           F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G  +  E+ A  
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  LQ+
Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATL
Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   FP+ 
Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQS V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ 
Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L +F
Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A +LA+++LS +   Q                I VP VG ++A  + 
Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLQ 561

Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+  + 
Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|188533249|ref|YP_001907046.1| NAD-dependent DNA ligase LigA [Erwinia tasmaniensis Et1/99]
 gi|254781330|sp|B2VE40|DNLJ_ERWT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188028291|emb|CAO96149.1| DNA ligase [Erwinia tasmaniensis Et1/99]
          Length = 670

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/715 (34%), Positives = 411/715 (57%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +  A P+L  ++ P  
Sbjct: 1   MESLQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAAHPELLTTDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+  ++ E  R F  R+    +  DD  + F  E K
Sbjct: 60  --QRVGAAPLSAFEQVRHEVPMLSLDNAFDEESYRAFNKRVQDRLKSSDD--LTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A +R I  IP R+   NIPE +EVRGEV+
Sbjct: 116 LDGLAVSLLYEQGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           +    F  +N++    G+K +ANPRNAA+G LR+L+P     R L FF +GLG  +  E+
Sbjct: 176 MPLAGFEKMNEQARRGGQKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +     LQ+ +  G PV++ VR  ++   ++ +Y+++++ R  L +DIDG+V KVD  
Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRVRLCHSPSDVLDFYHQVEADRPALGFDIDGVVIKVDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQITTVRDVEFQVGRTGAITPVARLEPVLVAGVMVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GDRV+++RAG+VIP+V+ ++  E    A+   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVMSVV--ESAEGARDVI 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G++VA  RCTGGL C AQ+   LKHFVSR A +I+G+G++
Sbjct: 402 FPTHCPVCGSDVER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGEK 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     E     ++ PA++F L      +  K+  +   G  S  N+ D++ K +  +
Sbjct: 456 IIDQLVDKE----YVKNPAELFEL------TAGKLTGLDRMGPKSAQNVVDALAKAKQTT 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGI  VG   A +LA ++ +       +  ++A + D   +LI VP VG ++A
Sbjct: 506 FARFLYALGISEVGEATAANLAAHFGT-------LEALMAADID---TLITVPDVGKVVA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F     N   +  L+++   +    +    + + S    K +V TG+L  + R  
Sbjct: 556 SHVRNFLDEESNREIIRLLVEKAGVNWPDVVVVKAEEIDSPFAGKTVVLTGSLSILSRDD 615

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E++ + LL +
Sbjct: 616 AKERLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMMRLLGE 670


>gi|153001196|ref|YP_001366877.1| DNA ligase, NAD-dependent [Shewanella baltica OS185]
 gi|166216241|sp|A6WPS5|DNLJ_SHEB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151365814|gb|ABS08814.1| DNA ligase, NAD-dependent [Shewanella baltica OS185]
          Length = 685

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 255/716 (35%), Positives = 393/716 (54%), Gaps = 63/716 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  ++
Sbjct: 12  EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P     ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 72  SPT---QRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRV-----TDKVGEVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG-- 244
           GE ++ K  F ALND   A   K + NPRNAA+G LR+L+ + IT  R L F+ + LG  
Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLD-SKITAARSLAFYAYALGVV 242

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              S   AK  +E LQ+++  G P+++ ++       +  YY  + + RS L ++IDG+V
Sbjct: 243 EPDSHPLAKTHFEQLQQLKSWGLPISSEIKVCAELSQVYDYYKNILTRRSDLAFEIDGVV 302

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +
Sbjct: 303 MKVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 362

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN D I  L            I+VGD V+++RAG+VIP++V I+   R  
Sbjct: 363 GGVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPE 411

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            A    FP  CP+C S V R      G+ VA  RC+GGL C AQ+ E +KHF SR A +I
Sbjct: 412 TATDIVFPHNCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDI 465

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I 
Sbjct: 466 DGMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIE 515

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIR VG   A +LA ++ S    A  +  +          L  V  
Sbjct: 516 AAKTTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTEVED 565

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGT 657
           VG ++AQ +  F+  P N+  ++AL+     + G H   + +       ++ +  V TGT
Sbjct: 566 VGAVVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSADAQPLKGQTWVLTGT 620

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           L ++ R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+M+E++
Sbjct: 621 LNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676


>gi|50084060|ref|YP_045570.1| DNA ligase [Acinetobacter sp. ADP1]
 gi|81393600|sp|Q6FDW0|DNLJ_ACIAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49530036|emb|CAG67748.1| DNA ligase [Acinetobacter sp. ADP1]
          Length = 676

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 260/713 (36%), Positives = 391/713 (54%), Gaps = 55/713 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L Q I+ H+  YY   +P I D+EYD L  +  A+   +P+L +++ P    N++G
Sbjct: 10  QMRQLIQLIAKHNHAYYVMDQPSITDNEYDQLFHQLKALEAEYPELTQADTPT---NRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+       VTH++P LSL  ++N EDL  F  RI    ++  +  I + +E K+DG  I
Sbjct: 67  GQALSKFETVTHAVPMLSLGNVFNQEDLFAFARRIE---ERLPNQQIQYDVELKLDGLAI 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISKN 196
           ++ YE G  V    RGDG +GED++  ++ I  +P+ L   S+  P  +EVRGEV + K 
Sbjct: 124 SLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKHLQHHSVETPRFLEVRGEVLMPKQ 183

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ- 254
            F  LN    A G K +ANPRNAA+G LR+L+P    +R L F+ +G+ +       G  
Sbjct: 184 GFERLNAANEAKGEKTFANPRNAAAGSLRQLDPAIAASRPLAFYAYGIAQCEPHHGLGSM 243

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ +  LGF +       ++   +   Y +++  R  L  +IDG+V KVD+   Q+Q
Sbjct: 244 HESLQWLTQLGFEIAERQFLCSSIQEVQQCYEQIQQERPDLAVEIDGMVIKVDDLKQQQQ 303

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R PRW  ++KF  + A T + +ID Q+GRTG LTPVARL+PV +GG  ++N TLH
Sbjct: 304 LGFLSREPRWATAYKFPAEVAMTTVENIDWQVGRTGTLTPVARLQPVFVGGVTVSNVTLH 363

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I  L           D+RVGDRV V R+G+VIPKV  +    R   A+    P  C
Sbjct: 364 NIGEIHRL-----------DVRVGDRVSVYRSGDVIPKVEKVWPEFRPELAEIVQLPEQC 412

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++  
Sbjct: 413 PVCSSPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESL 466

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     ++  ADI+ L   ++   T    I   G+ SV NL D+I   +  +L RFI
Sbjct: 467 LHLD----LLKDVADIYHLHEHREQLLT----IEKMGEKSVQNLMDAIEASKKTTLARFI 518

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   AR LA  + +     Q           D  +L + P VGDI A+ I +
Sbjct: 519 YALGIRGVGETTARMLANTFQTLDALKQA----------DIEALKKTPDVGDITAEWIYD 568

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F+    NI  ++ LL     + G H           +  +  V TGTL+ + R +A + +
Sbjct: 569 FFLAEHNIEVLDRLL-----AAGIHWDAPLAPTRQPLNGESWVVTGTLETMGRDEATQRL 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             LGA VS  +S KT  ++ G+  GSKL+KA++L +++MNE++FL  L QY+ 
Sbjct: 624 QALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLQIRVMNEQEFLAFLAQYSA 676


>gi|212634787|ref|YP_002311312.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3]
 gi|254781417|sp|B8CN91|DNLJ_SHEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212556271|gb|ACJ28725.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3]
          Length = 668

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/707 (35%), Positives = 398/707 (56%), Gaps = 54/707 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+  L Q+++ H+  YY    P I D EYD L +R   +    P+ A+++ P     ++G
Sbjct: 7   EILELTQQLNLHNYHYYVDDNPTIPDVEYDRLLKRLIELETQSPEFAKADSPT---QRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE      ++TH  P LSL+ +++  +   F +RI      K   ++ +  EPK+DG  +
Sbjct: 64  GEALAKFEQITHLKPMLSLDNVFDETEFNGFHSRI----TDKVGTALSYCCEPKLDGLAV 119

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           +I Y  G F  AA RGDG +GE+++  +R I +IP ++   N P ++EVRGEV +    F
Sbjct: 120 SIVYRDGVFERAATRGDGQTGENITENVRTIKSIPLKLRGDNFPPLVEVRGEVIMPHKAF 179

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTSEIFAKGQ 254
            ALN+   A G K + NPRNAA+G LR+L+     +R L F+ + LG     S   A   
Sbjct: 180 NALNERARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESWELADSH 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y  L+++R  G PV+  V+  ++   ++ YYN+++  RS+L ++IDG+V KV++ + Q  
Sbjct: 240 YGQLEQLRSWGVPVSQEVKVCDSVTEVMDYYNDIQQRRSSLDFEIDGVVLKVNQIAHQLS 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  ++NATLH
Sbjct: 300 LGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            ++VGD ++++RAG+VIP++V I+ ++R  DAQ   FP  C
Sbjct: 360 NADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAIVADKRPDDAQDIVFPERC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V R      G+ VA  RC+GGL C AQ+ E +KHF SR A +I+G+G + ++  
Sbjct: 409 PVCDSEVER----IEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     +  PAD+F L     ++ T +E +   G  S T L  +I   +  +  RF+
Sbjct: 463 IDKE----LVESPADLFKL---TASAMTMLERM---GMKSATKLVAAIEVAKETTFARFL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA Y+            + A         I+V  VG I+A  +  
Sbjct: 513 YALGIREVGEATAANLAAYF----------KTLDALKGASAEEFIKVDDVGAIVAAHLAH 562

Query: 615 FYQNPRNICAVEALLK-EVS-PSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           F   P N+  ++ L+   VS P+I    E+++S  ++ +  V TGTL ++ R+ A+  + 
Sbjct: 563 FLAQPHNLEVIDKLIAVGVSWPAIEEVAEEDLS--LKGQTWVLTGTLTQLNRNDAKAQLQ 620

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            LGA V+  +S+ TD ++ G   GSKL KAQ+LGVK+++EE  + +L
Sbjct: 621 ALGAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDEEALIAIL 667


>gi|223936891|ref|ZP_03628800.1| DNA ligase, NAD-dependent [bacterium Ellin514]
 gi|223894460|gb|EEF60912.1| DNA ligase, NAD-dependent [bacterium Ellin514]
          Length = 680

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 247/714 (34%), Positives = 398/714 (55%), Gaps = 55/714 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A+   + L +EI  HD+ YY  +KP I D  YD L      +   FPDL  S+ P+   
Sbjct: 5   EAKTRHTQLVEEIRGHDNAYYVEAKPTISDQAYDRLYHELLDLEKKFPDLITSDSPS--- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++ GE       V H  P +SL+  ++ +D+R F+ R+ R      + ++ + LEPK+D
Sbjct: 62  QRVSGEPLKEFKPVHHLSPMMSLDNTYSQQDVRDFVGRVQRLLP---NETLEWILEPKVD 118

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVY 192
           G  I ++YEKG FV  A RGDG +G+DV++ ++ I +I   L  +   +P+++E+RGEVY
Sbjct: 119 GVAINLKYEKGVFVCGATRGDGTTGDDVTSNLKTIRSIAGKLKASGRKLPDVVEIRGEVY 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF- 250
           + K  F  +N E +A G +P+ANPRN+A+G L++L+P  +  R L+  V+GLG    +F 
Sbjct: 179 LPKAAFTKINAERVAAGEEPFANPRNSAAGSLKQLDPRIVAKRPLDVIVYGLG----VFE 234

Query: 251 ----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   E+L  ++  G        +  +   ++   NE+  +R    Y+ DG V K+
Sbjct: 235 GAERPKEHDEVLAWLKSAGCKTPEKTWKCCSADELIDAINELDQLRRKFTYETDGAVIKL 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           + F+L++++G  +++PRW I++K+A +QA T+L  I IQ+GRTG LTPVA LEPV + G+
Sbjct: 295 NSFALRERIGFTSKAPRWAIAYKYAAEQAETKLKAITIQVGRTGALTPVAELEPVFLAGS 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+ ATLHNED ++            +DIRVGD V +++AGEVIP VV +++ +R     
Sbjct: 355 TISRATLHNEDELR-----------RKDIRVGDTVTIEKAGEVIPAVVGVVLTKRTGKEV 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F FP+ CP C S+V R    + G      RC    AC AQ   R++H+ +R A +IEG 
Sbjct: 404 QFQFPTHCPECGSKVARTEGTENGAAGVVWRCLNA-ACPAQIRGRIEHWCARGAMDIEGG 462

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+  +            +R  +D+++L   Q      +  +   G+ S  N  D +   +
Sbjct: 463 GEALVSQLVTK----GLVREVSDLYSLTLDQ------VAGLERMGEKSAQNFLDGVQASK 512

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              + R +F LGI HVGA +A+ L + + +       +++I A + +    L  V  +G+
Sbjct: 513 TRDMWRLLFGLGILHVGAGVAKRLGRRFTT-------LDDIFAASQE---QLTEVEDIGE 562

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI---ENKKLVFTGTLQKIQR 663
           +IA +IV+++Q P+N   +E LL++   +        ++ +     K  V TGTL  ++R
Sbjct: 563 VIAHSIVQWHQEPKNRELIE-LLRKAGLNFNSELYKPAAALGHFAGKTFVLTGTLPTLKR 621

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +A   +  LG  VS  +S+KTD I+ G++ GSKLEKAQ+LGVKI++E  FL L
Sbjct: 622 EEAAAKIEALGGKVSGSVSKKTDYIVAGEDAGSKLEKAQKLGVKIIDEAAFLKL 675


>gi|92112835|ref|YP_572763.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043]
 gi|122990589|sp|Q1QZP4|DNLJ_CHRSD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91795925|gb|ABE58064.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043]
          Length = 691

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/724 (35%), Positives = 402/724 (55%), Gaps = 63/724 (8%)

Query: 14  IEQA-RKELSSLEQEISYHDDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           I QA R+   +L Q++   DD  YQY     P I D+EYDAL R   ++    P+L   +
Sbjct: 4   IPQAVRERADTLHQQL---DDANYQYYVEDDPRITDAEYDALLRELQSLEAEHPEL---K 57

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++G        +VTH++P LSL+  ++  +L  F+ R+    +  D +++ F 
Sbjct: 58  TPDSPTQRVGAAPAERFEEVTHAVPMLSLDNAFDDAELAAFVKRVADKLEC-DGDTLAFC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188
            EPK+DG  + + YE G+ V  A RGDG +GEDV+  +R I +IP ++   +IP +IEVR
Sbjct: 117 CEPKLDGLAVALVYENGRLVQGATRGDGRTGEDVTLNLRTIRSIPLKLRGDSIPPLIEVR 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-T 246
           GEVY+  + F ALND     G K +ANPRNAA+G LR+L+ +    R L F  + + +  
Sbjct: 177 GEVYMRHSGFEALNDRARENGDKVFANPRNAAAGSLRQLDSSIAAARPLEFCAYQVARLE 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E  A    + L+++R LGF  +  +       G++ + + +   R+ L YDIDG V KV
Sbjct: 237 GEDDAHSHSDYLKRLRTLGFRTSPLLDVVKGERGVIDFCHRLGEQRNGLDYDIDGAVIKV 296

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q++LG  +R+PRW I++K+  ++ +T L D+  Q+GR G LTPVA+LEPV + G 
Sbjct: 297 DSLRDQRELGFVSRAPRWAIAYKYPAQEQTTTLNDVVFQVGRVGTLTPVAKLEPVQVAGV 356

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            + NATLHN D I+ L            +R+GD V+V+RAG+VIP++V ++ ++R    +
Sbjct: 357 TVANATLHNMDEIERL-----------GVRIGDTVIVRRAGDVIPQIVGVVESQRPATTR 405

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S+  R      G++ A  RC+GGL C AQ+ E LKHF SR A +I+GL
Sbjct: 406 AIEMPEHCPVCGSQTER----LEGEVAA--RCSGGLFCPAQRKEALKHFASRRALDIDGL 459

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +D   + E     ++ PAD+F L+        ++  +    + S  NL +++   +
Sbjct: 460 GEKLIDLLVERE----WVKTPADLFRLE------AERLAELPRLAEKSANNLVNALEAAK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI+++GIR VG   A SLA+++ S Q  ++     +    D          VG 
Sbjct: 510 RTTLARFIYAIGIREVGEATAASLARHFGSLQALSEASLEALEAVED----------VGP 559

Query: 607 IIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           ++A+ I  F++ P N   +E L       +EV  + GR +      +  +  V TGTL+ 
Sbjct: 560 VVARHIHTFFRQPHNQETLEDLQGVGVTWEEVEIA-GRPQP-----LAGQTWVLTGTLES 613

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R   +  +  LGA VS  +S+KT  ++ G+  GSKLEKAQ LGV++++E +FL  L  
Sbjct: 614 MTRDDGKARLQALGAKVSGSVSKKTAGVVAGEAAGSKLEKAQNLGVEVIDEREFLQRLAH 673

Query: 721 YNTT 724
           + + 
Sbjct: 674 WESA 677


>gi|317127163|ref|YP_004093445.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522]
 gi|315472111|gb|ADU28714.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522]
          Length = 670

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 252/709 (35%), Positives = 404/709 (56%), Gaps = 57/709 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I+Q    L+++  + +YH   YY   +P + D+EYD L      +  A+P+  R + P+ 
Sbjct: 6   IKQEIDRLTNILNDYAYH---YYVLDQPKVSDAEYDQLLHELTKLEEAYPEWKRDDSPS- 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GG+      KV H +P LSL   +N E+LR F  R+ +       +   ++ E K
Sbjct: 62  --ERVGGQPLEHFSKVQHDVPMLSLSNAFNEEELRDFDRRVRQGL----GHEPTYSCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  +T++YE+G+FV  A RGDG  GED+++ ++ +P+IP  L L     IEVRGE ++
Sbjct: 116 IDGLAVTLKYEQGRFVQGATRGDGTVGEDITSNLKTVPSIP--LRLKEAVTIEVRGEAFM 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K  F+ LN+     G + +ANPRNAA+G LR+L+P     R L+ F++ +GK       
Sbjct: 174 PKRSFIRLNEAKEKNGEQLFANPRNAAAGSLRQLDPKIAAKRSLDIFIYSVGKVEGEDIP 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +  L  ++ LGF  N   +   T   ++ Y     S R+ LPY+IDG+V KVD  + Q
Sbjct: 234 SHHGALNYVKELGFKTNEHQKHCKTIDEVIDYCESWLSKRADLPYEIDGIVIKVDALADQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  A+SPRW  ++KF  ++  T LLDI++ +GRTG++TP A LEPV++ G  +  A+
Sbjct: 294 EQLGFTAKSPRWATAYKFPAEEVVTTLLDIELSVGRTGVITPTAILEPVSVAGTTVQRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I+ L           D+++GD+V +K+AG++IP+VV+++V +R  + + FS P+
Sbjct: 354 LHNEDLIREL-----------DLKLGDKVTIKKAGDIIPEVVNVLVEQRTGEERDFSMPT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S ++R      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ + 
Sbjct: 403 QCPECHSELIR----IEGEV--ALRCVNP-KCPAQIREGLIHFVSRNAMNIDGLGERVIT 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F  +     I   AD++ L+R+       + N+   G+ SV NL  +I   +  SLE+
Sbjct: 456 QLFNHK----LIEDVADLYKLERQL------LLNLERMGEKSVDNLLRAIEASKENSLEK 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRHVGA+ A++LA+++    N   +I N    +      L  +  VG+ +A A+
Sbjct: 506 LLFGLGIRHVGAKAAKTLAQHF----NTIDQIQNATRED------LEAINEVGEKMADAV 555

Query: 613 VEFYQNPRN---ICAVEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           V +++ P     I  +EAL   L+   P+I   +   ++    K +V TGT++++ R  A
Sbjct: 556 VTYFETPEVKELISELEALDINLEYKGPNINVSDDANNAYFSGKTVVLTGTMEQMARGDA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           ++ +   G  V+  +S KTD++I G+  GSKL+KAQ L ++I +E +FL
Sbjct: 616 KKEIEARGGNVTGSVSSKTDLLIAGEKSGSKLKKAQDLNIEIWDEARFL 664


>gi|290967938|ref|ZP_06559488.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L]
 gi|290782077|gb|EFD94655.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L]
          Length = 668

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 247/708 (34%), Positives = 390/708 (55%), Gaps = 60/708 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQ +  L+ ++++++     YY    P + D EYD L R  + +   +P       P+ P
Sbjct: 6   EQEKVRLAEIKKQLAELSYQYYTLDAPTVSDYEYDMLYRELETLEKKYPQWV---TPDSP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +IG +++ +  K TH  P LSL  +++ E++R+F  R+    Q+     + + +E KI
Sbjct: 63  TQRIGSKISGTFAKYTHDRPMLSLGDVFSDEEVREFDARVR---QELPGERVAYVVELKI 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + + YEKG+FV    RGDGH GED++  +R I T+P  +S ++ + +E+RGEVY+ 
Sbjct: 120 DGLAVNLIYEKGRFVRGVTRGDGHVGEDITHNVRTIRTVPLHIS-DLSDHVEIRGEVYMP 178

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
              F ALN++  A   +P+ANPRNAA+G LR+ +P     R L+FF + LG TS+   + 
Sbjct: 179 IPAFRALNEQRSADELEPFANPRNAAAGSLRQQDPQVAAERKLSFFAYALGGTSDWRPES 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q  +LQ +R L FPVN   R       +++Y +   + R TL Y  DG+V KV+ F+ Q+
Sbjct: 239 QEALLQTLRNLHFPVNREYRTFTDIQDVIAYIHTWDTRRDTLSYATDGMVIKVNSFAQQQ 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   + PRW I++KF  +QA T++L I + +GRTG+LTP A L+PV + G  + +ATL
Sbjct: 299 MLGNTVKIPRWAIAYKFPPEQARTKVLQIRVGVGRTGVLTPTAELQPVRLAGTTVKSATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNE+YI+            +DIR+GD VL+++AGE+IP+VV  ++  R      F  P+ 
Sbjct: 359 HNEEYIR-----------SKDIRIGDTVLIQKAGEIIPEVVRPVMEARTGREVVFVMPTQ 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG----KQ 489
           CP C  +V R+         AA RC    AC A   E++ HFVSR A NIEGLG    KQ
Sbjct: 408 CPSCGGQVQREAGE------AAVRCVNP-ACPAMVAEQIAHFVSRPAMNIEGLGTAIVKQ 460

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D           I   AD+F L + +      I  + GFG+ S  NL  SI   +   
Sbjct: 461 LIDHGL--------IHDVADLFLLHKEE------ILPLEGFGEKSADNLLQSIAAAKEAG 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R +F+LGIR VGA+  R LA+ + S Q  A            D  +L+ V  +G  IA
Sbjct: 507 LGRLLFALGIRFVGAKAGRILAETFGSMQALAAA----------DIATLMAVETIGPRIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKA 666
           +++  ++ + + +  ++ L    +  +G  EK    +++  + + +V TG LQ   R +A
Sbjct: 557 ESVAAYFADSQKVRVIQKL---AAAGVGMTEKKRQLINTSFDGEIVVLTGKLQHFSRKEA 613

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           +  ++  G   +A +++KT +++ G +PGSK +KA+ LG   + EE+F
Sbjct: 614 EAAISARGGSCTATVTKKTTLVVCGADPGSKYDKAKALGTPTIGEEEF 661


>gi|239815926|ref|YP_002944836.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
 gi|239802503|gb|ACS19570.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
          Length = 694

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 250/715 (34%), Positives = 396/715 (55%), Gaps = 60/715 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +++  H   YY    P + D+EYD L +R  A+   +P+L     P+ P  ++GG++ 
Sbjct: 14  LSEQLHKHAHLYYVLDAPELPDAEYDRLFQRLQALEAEYPEL---RTPDSPTQRVGGKVL 70

Query: 84  LSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMIT 140
               KV H +P LS+    +I       F  R+ +     +D   + +  E K DG  + 
Sbjct: 71  EGFVKVRHKVPMLSIRTETDISPGGASAFDARVRKELGLAEDGPQVEYVCELKFDGLAMN 130

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           +RYE G  V AA RGDG  GE+V+  IR +  IP  L+   P ++EVRGE+Y+ + DF A
Sbjct: 131 LRYENGVLVQAATRGDGEVGEEVTQNIRTVREIPLRLNGKAPPVVEVRGEIYMKRADFEA 190

Query: 201 LND---EMIAVGRKP---YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           LN+   E IA G+K    + NPRNAA+G +R+L+P     R L+FF +GLG+ +     G
Sbjct: 191 LNERQREKIAAGQKNEKVFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGLGEVTPASEGG 250

Query: 254 -----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ LQ+    GFPV     +A     +++++  +   R  LPYDIDG+VYKVD 
Sbjct: 251 PEFPTQFDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYDIDGVVYKVDS 310

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++LG  +R PRW ++HK+  ++  T +L I++Q+GRTG LTPVA+L PV +GG  +
Sbjct: 311 IELQRRLGFVSREPRWAVAHKYPAQEQITEVLGIEVQVGRTGKLTPVAKLAPVFVGGVTV 370

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE-RHPDAQP 427
           TNATLHNED  +            +D+RVGD+V+V+RAG+VIP+VV ++      P+ + 
Sbjct: 371 TNATLHNEDEAR-----------RKDVRVGDKVIVRRAGDVIPEVVGVVPESLARPEGER 419

Query: 428 ---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              F+ P  CP+C S  +R+     G++   +RCTGGL C+AQ+ E + HF +R A +I+
Sbjct: 420 GLLFTMPHQCPVCGSEALRE----EGEV--DYRCTGGLFCAAQRKEAILHFAARRAVDID 473

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + ++        A  IR   D++ L          +  +    D S  NL D++  
Sbjct: 474 GLGDKLVEQLVD----ANLIRTLPDLYKL------GFATLAGLDRMADKSAKNLVDALEA 523

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+F LGIRHVG   A+ L+K++        +++ I+  + +    L+ V  V
Sbjct: 524 SKKTTLPRFLFGLGIRHVGESTAKDLSKHF-------GKLDAIMDASEE---QLLEVNDV 573

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G ++AQ++  F+  P N   VE L    ++   G         +     V TGTL  + R
Sbjct: 574 GPVVAQSLRTFFDQPHNREVVEQLRACGLTWEEGEPAARAPKPLAGLTFVITGTLPTLSR 633

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A++ +   GA V+  +S+KT  ++ G+  GSKL+KA+++GV++++E + L LL
Sbjct: 634 DEAKDKLEAAGAKVAGSVSKKTSYLVAGEEAGSKLDKAREIGVEVIDEARMLELL 688


>gi|254514186|ref|ZP_05126247.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
 gi|219676429|gb|EED32794.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
          Length = 675

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 252/705 (35%), Positives = 391/705 (55%), Gaps = 52/705 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L +++   +  YY   +P + D +YDA  R    +    P+L   +DP+ P  ++G   
Sbjct: 13  ALREQLERWNHQYYVLDEPTVPDQDYDAALRELQKLETEHPEL---QDPSSPTQRVGAAP 69

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI-FFTLEPKIDGTMITI 141
             +   V H +P LSL+  ++ E+L  F+ R+     + D  S+     EPK+DG  +++
Sbjct: 70  LSAFESVAHPMPMLSLDNAFSDEELGAFLQRVM---DRLDVESLPELVAEPKLDGIAVSL 126

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLA 200
            Y  G    AA RGDG  GED++  +R I ++P R+     P+++E+RGE+++ +  F A
Sbjct: 127 IYRDGVLARAATRGDGTHGEDITLNVRTIGSVPLRLGGDACPDVVEIRGEIFMPRAGFEA 186

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEM 257
            N+     G KP+ NPRNAA+G LR+L+ + IT  R L F  +  G+  E  + K  +E+
Sbjct: 187 FNEYARRNGEKPFVNPRNAAAGSLRQLD-SQITARRPLEFCAYASGQHPESQWPKSHWEV 245

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ     G P++    + ++    V YY  +   R +L +DIDG+VYKV++F  Q +LG 
Sbjct: 246 LQLFASWGVPISRYAERLSSLEECVDYYQRLGDQRDSLSFDIDGIVYKVNDFEAQSKLGF 305

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            AR+PRW I+ KF  ++A T++  ++ Q+GRTG +TPVARLEPV +GG  ++NATLHN D
Sbjct: 306 VARAPRWSIARKFPAQEAVTKVTGVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNMD 365

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            +           G  ++  GD V+V+RAG+VIP+VV +I   R PDA   + PS CP+C
Sbjct: 366 EV-----------GRLELHDGDTVVVRRAGDVIPQVVSVIEERRLPDAALIAAPSACPVC 414

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S V R     T       RC+GGL C AQ    ++HF SR A +I+GLG++ ++    +
Sbjct: 415 ASAVQRVAGEAT------LRCSGGLVCPAQLKAAVRHFASRRAMDIDGLGEKLVEQMVDT 468

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +R  AD+F L++R   +  ++      G+ S T L  +I   R  +L RFIF+L
Sbjct: 469 G----LVRDVADLFRLEQRSLLTLERM------GEKSATKLLAAIESSRRTTLARFIFAL 518

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG   A +LA Y+ S       I  I A + D   SL+ VP VG ++AQ +  F+ 
Sbjct: 519 GIREVGEATALALATYFGS-------IEAIRAADLD---SLLEVPDVGPVVAQHLRAFFS 568

Query: 618 NPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
              N   +E LL    V P++    +N    +E +  V +G L+   R +A+E +  LGA
Sbjct: 569 AQANQQVLERLLAAGVVWPAVS-PAQNAQGPLEGQTWVVSGKLESQSRDEAEEALRALGA 627

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             S  +S KT +++ G   GSKL KA+ LGV+I++E++FL  L +
Sbjct: 628 RTSKSVSGKTSVLLAGPGAGSKLAKAESLGVEIVDEQEFLARLAK 672


>gi|15640987|ref|NP_230618.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|153822692|ref|ZP_01975359.1| DNA ligase [Vibrio cholerae B33]
 gi|229510900|ref|ZP_04400379.1| DNA ligase [Vibrio cholerae B33]
 gi|229518021|ref|ZP_04407465.1| DNA ligase [Vibrio cholerae RC9]
 gi|229608449|ref|YP_002879097.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MJ-1236]
 gi|254291846|ref|ZP_04962629.1| DNA ligase [Vibrio cholerae AM-19226]
 gi|254848101|ref|ZP_05237451.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10]
 gi|255744753|ref|ZP_05418704.1| DNA ligase [Vibrio cholera CIRS 101]
 gi|262151242|ref|ZP_06028378.1| DNA ligase [Vibrio cholerae INDRE 91/1]
 gi|81545212|sp|Q9KTD1|DNLJ_VIBCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|9655431|gb|AAF94133.1| DNA ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126519773|gb|EAZ76996.1| DNA ligase [Vibrio cholerae B33]
 gi|150422206|gb|EDN14170.1| DNA ligase [Vibrio cholerae AM-19226]
 gi|229344736|gb|EEO09710.1| DNA ligase [Vibrio cholerae RC9]
 gi|229350865|gb|EEO15806.1| DNA ligase [Vibrio cholerae B33]
 gi|229371104|gb|ACQ61527.1| DNA ligase [Vibrio cholerae MJ-1236]
 gi|254843806|gb|EET22220.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10]
 gi|255737784|gb|EET93178.1| DNA ligase [Vibrio cholera CIRS 101]
 gi|262030933|gb|EEY49561.1| DNA ligase [Vibrio cholerae INDRE 91/1]
          Length = 669

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L + +  H   YY    P I D+EYD L R    +  A P+L  S+ P+    ++
Sbjct: 6   QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK+DG  
Sbjct: 63  GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G    AA RGDG +GE+++  +R I +IP R+   + P  +EVRGEV++ K  
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253
           F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G  +  E+ A  
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  LQ+
Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATL
Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   FP+ 
Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQS V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ 
Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L +F
Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A +LA+++LS +   Q                I VP VG ++A  + 
Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLQ 561

Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+  + 
Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+ TD++  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 622 ALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|71064896|ref|YP_263623.1| NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
 gi|123734475|sp|Q4FUW9|DNLJ_PSYA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71037881|gb|AAZ18189.1| probable NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
          Length = 691

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 265/710 (37%), Positives = 391/710 (55%), Gaps = 51/710 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + Q R  + +L+Q    H+  YY    PI+ DSEYD L+R    +   +PDL +   P+ 
Sbjct: 26  VTQMRTFIDTLKQ----HNYAYYVLDNPILEDSEYDQLRRSLLELEEEYPDLVQ---PDS 78

Query: 74  PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P+N++G +M L  F +VTH IP LSL  ++   DLR F+ R+          S  + +E 
Sbjct: 79  PINQVG-DMPLPAFTQVTHDIPMLSLGNVFEYNDLRDFMRRVNDRLSVAQ-QSPEYEMEL 136

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEV 191
           K+DG  ++++Y  GKF  A  RGDG +GED++   + I  +P  L+     E++EVRGEV
Sbjct: 137 KLDGLAVSLKYVHGKFTQAVTRGDGQTGEDITQNAKTIRNMPLWLADAADIELLEVRGEV 196

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            + K  F  LN        K +ANPRNAA+G LR+L+P+   +R L F+ + + +     
Sbjct: 197 LMPKAGFERLNRLAAEKEEKTFANPRNAAAGSLRQLDPSVAASRPLAFYAYSVNQGLLDT 256

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q   L  ++ +GF V+  V   +      +YY  + + R+ LP++IDG+V KV+  +
Sbjct: 257 IDTQSAALAWIKDIGFSVS-AVEVVSNPREAQTYYESIIATRADLPFEIDGMVIKVNSLA 315

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  +R PRW  ++KF  +   TRL  ID Q+GRTG +TPV +LEPV +GG  ++N
Sbjct: 316 LQQQLGFLSREPRWATAYKFPAETVMTRLHAIDWQVGRTGQITPVGKLEPVKVGGVTVSN 375

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN   I+ L           D+R GD V V RAG+VIPKV  +   +R  +++P   
Sbjct: 376 VTLHNFGEIQRL-----------DVRAGDMVSVHRAGDVIPKVTRVWHEQRPENSEPVQL 424

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S VV    PK   L    RCTGGL C AQQ E L HFVSR A +I+GLG   
Sbjct: 425 PSTCPVCDSPVVL---PKDEALA---RCTGGLFCPAQQQEALIHFVSRRAMDIDGLGASW 478

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L  FF+       ++  ADI+ L   Q+   T    +   G+ SV N+  +I   ++ +L
Sbjct: 479 LISFFEHG----LVKTVADIYQLHNHQEELVT----LEKLGEKSVQNIISAIEASKHTTL 530

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI++LGIR VG   A          QN AQ+  ++ A  +     L+  P VG I A+
Sbjct: 531 SRFIYALGIRGVGETTA----------QNLAQQFGDLDALMSASIEKLLLTPDVGAITAE 580

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQE 668
              +F++ P NI  + A L+E      + E+ VS    ++ +  V TG L  + R +A+ 
Sbjct: 581 LAYKFFRAPHNIEVITA-LREAGVHWDKVEQVVSEGLPLDGQTWVITGALDSMARDEAKA 639

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA VS  +S KT  ++ GD  GSK+ KA++LGVK++ EE+FL L+
Sbjct: 640 KLQALGAKVSGSISAKTTALLAGDKAGSKMAKAEKLGVKVVGEEEFLALV 689


>gi|300114089|ref|YP_003760664.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113]
 gi|299540026|gb|ADJ28343.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113]
          Length = 675

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 252/709 (35%), Positives = 394/709 (55%), Gaps = 53/709 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A+  + +L++ I+ +D  YY    P+I DSEYD L R    +   +P+L   + P     
Sbjct: 7   AKDRIQALKELINNYDYAYYVMDNPLIPDSEYDRLIRELRVLEENYPELITLDSPT---Q 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFTLEPKID 135
           ++G +    L +V H +P LSL   ++  +L  F  R+  R   ++ D    +  EPK+D
Sbjct: 64  RVGAKPIKFLGEVKHEVPMLSLNNAFHEGELVDFHRRVKARLGIERVD----YAAEPKLD 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  +++ Y+ G  V  A RGDG +GEDV+  IR IPT+   L     P ++EVRGEVY+ 
Sbjct: 120 GLAVSLLYQDGVLVQGATRGDGVTGEDVTHNIRTIPTVSLCLRDEKAPSLLEVRGEVYMP 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAK 252
           +  F  LN E I  G KP+ NPRNAA+G LR+L+     +R L  F +G+G+  + I   
Sbjct: 180 RKGFERLNREQIVKGEKPFVNPRNAAAGSLRQLDSRIAASRPLAIFCYGIGQVEQGILPD 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E+L +++  G  +   ++      G   YY  M  +R  LPY+IDG+V+KVD  + Q
Sbjct: 240 RHSEVLCQLKQWGLRILPHLQVVEGLAGCKKYYQHMLDMRDKLPYEIDGVVFKVDYLNQQ 299

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  AR+PRW +++KF  ++  T++LDI++Q+GRTG LTPVA L+P+ +GG  ++ AT
Sbjct: 300 QTLGSLARAPRWALAYKFPAQEELTQILDIEVQVGRTGALTPVAWLQPIFVGGVTVSKAT 359

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNE         G++ R  +DIR+GD V V+RAG+VIP++V +++ ER P ++ F  P 
Sbjct: 360 LHNE---------GEIRR--KDIRIGDTVYVRRAGDVIPEIVKVVLEERLPGSRLFQMPR 408

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S +V++     G+ +A  RC+GGL C AQ+ E +KHF +R A +I GLG + ++
Sbjct: 409 QCPVCDSEIVKE----EGRAIA--RCSGGLYCPAQRKEAVKHFAARRAMDINGLGDKLVE 462

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              K       I+  AD++ L + Q     ++      G  S  NL ++I + ++ +L R
Sbjct: 463 QLVKRG----LIKDVADLYDLTKEQLVGLERM------GQKSAANLINAIQQSKHTTLPR 512

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG   A+ L K + S    A      +    D          +G ++A  I
Sbjct: 513 FLYALGIREVGEATAQVLTKEFGSLAALASASEERLQQVVD----------IGPVVAAHI 562

Query: 613 VEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
             F++   N C V   L+E     P +  H+  +   +  +  V TGTL+ + R +A+E 
Sbjct: 563 AAFFRQLHN-CQVIQSLQEAGVCWPEL-EHKAPIVRPLSGRTFVLTGTLESMTREQAKER 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LG  VS  +S  TD +I+G  PGSKL KA+ L + I++E  FL LL
Sbjct: 621 LQALGGKVSGSVSPHTDYLIIGAKPGSKLIKARNLEITILDETNFLNLL 669


>gi|157371681|ref|YP_001479670.1| NAD-dependent DNA ligase LigA [Serratia proteamaculans 568]
 gi|190359284|sp|A8GHF2|DNLJ_SERP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157323445|gb|ABV42542.1| DNA ligase, NAD-dependent [Serratia proteamaculans 568]
          Length = 673

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/717 (34%), Positives = 412/717 (57%), Gaps = 58/717 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P + D+EYD L     A+  A P+L  ++ P  
Sbjct: 1   MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMGELRALESAHPELITADSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ E    F  R+    + K  + + F  E K
Sbjct: 60  --QRVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQD--RLKSSDPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE++++ +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N+E      K +ANPRNAA+G +R+L+P     R L FF +G+G  +  E+
Sbjct: 176 MPQAGFEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +  ++ L + +  G PV++  ++      ++++Y +++  R+ L +DIDG+V K+D+ 
Sbjct: 236 -PRSHWQRLMQFKDWGLPVSDRAKRCTGSDEVLAFYRQVEQDRTQLGFDIDGVVVKIDDI 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+ LG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 DLQETLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVLVAGVIVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +I   R  DA+   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVIAERRPADAREIL 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S V R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPQHCPVCGSDVER----VEGEAVA--RCTGGLICAAQRKEALKHFVSRRALDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   + E     ++ PAD+F L      S   +  +   G  S  NL +++ K +  +
Sbjct: 458 IIEQLVEKE----YVKNPADLFRL------SAGILTGLDRMGPKSAQNLVNALEKSKQTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA ++ +       ++ ++A    D  +L  VP VG+I+A
Sbjct: 508 FARFLYALGIREVGEATAANLAAHFGT-------LDKLLAA---DIEALKEVPEVGEIVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKI 661
           +    F     N   ++ L   VS  IG +         + + S    K +V TG+L ++
Sbjct: 558 KHTRHFLDEELNQQVIQEL---VSDEIGINWPAPVVIVAEEIDSPFAGKTVVLTGSLSQL 614

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 615 SRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEAEMIRLL 671


>gi|260363295|ref|ZP_05776162.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
 gi|308113593|gb|EFO51133.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
          Length = 655

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/697 (35%), Positives = 388/697 (55%), Gaps = 49/697 (7%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + YH   YY    P I D+EYD L R    I    PDL   + P+    ++GG+      
Sbjct: 1   MHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPS---QRVGGKPLSEFS 57

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITIRYEKG 146
           +VTH +P LSL+  ++  +L  F  R      +    SI  +  EPK+DG  +++ YE G
Sbjct: 58  QVTHEVPMLSLDNAFDDSELDSFHKRAQ---DRIGGESIKQYCCEPKLDGLAVSLLYENG 114

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
             V AA RGDG +GE+++  +R I  IP ++   + P  +EVRGEV++ K  F  LN+  
Sbjct: 115 ILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFMPKAGFEKLNELA 174

Query: 206 IAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRC 263
              G K + NPRNAA+G LR+L+     +R L+F+ + +G       A   YE   +++ 
Sbjct: 175 RQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLAASHYERFLQIKS 234

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
            G P+    ++ ++   + +YY  +   R  LPY+IDG+V K+D+ ++Q++LG  AR+PR
Sbjct: 235 WGLPMCPETKRVDSLADVKTYYQHILQRRDALPYEIDGVVIKIDDIAVQERLGFVARAPR 294

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NATLHN D I+ L 
Sbjct: 295 WAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERL- 353

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                      +++GD+V+++RAG+VIP+VV +I   R   A+   FP+ CP+C S V R
Sbjct: 354 ----------QVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVER 403

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
                     A  RCTGGL C AQ+ + LKHFVSR A +++GLG + ++     E     
Sbjct: 404 IEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDRE----M 453

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           +  PAD+F L      S   +  +   G  S  N+ +++ K +  +L RF++SLGIR VG
Sbjct: 454 VETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLTTLPRFLYSLGIREVG 507

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A +LA+++ S +                   LI V  +G ++A+ I  F++  +N  
Sbjct: 508 EATAANLAQHFKSLEAIQAATEE----------QLIAVQDIGVVVAKHITTFFEEEQNQA 557

Query: 624 AVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
            V+ LL +    P +   E+     +E K +V TGTL ++ R +A+E +  LGA V+  +
Sbjct: 558 VVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKEALQSLGAKVTGSV 617

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+
Sbjct: 618 SKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELI 654


>gi|229512467|ref|ZP_04401940.1| DNA ligase [Vibrio cholerae TMA 21]
 gi|229350548|gb|EEO15495.1| DNA ligase [Vibrio cholerae TMA 21]
          Length = 669

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++L+ L Q +  H   YY    P I D+EYD L R    +  A P+L  S+ P+    ++
Sbjct: 6   QKLTELRQILHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK+DG  
Sbjct: 63  GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G    AA RGDG +GE+++  +R I +IP R+   + P  +EVRGEV++ K  
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253
           F  LN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G  +  E+ A  
Sbjct: 181 FEVLNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  LQ+
Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATL
Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   FP+ 
Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQS V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ 
Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L +F
Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A +LA+++LS +   Q                I VP VG I+A  + 
Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVIVASHLQ 561

Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+  + 
Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+ TD++  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 622 ALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|229542656|ref|ZP_04431716.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1]
 gi|229327076|gb|EEN92751.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1]
          Length = 668

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/707 (36%), Positives = 385/707 (54%), Gaps = 66/707 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY   +P + D+EYD L R    I +A P+L     P+ P  ++G
Sbjct: 12  ELRKLLNQYSYE---YYVLDRPSVPDAEYDRLLRELQEIENAHPELI---TPDSPTQRVG 65

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-----YRFWQKKDDNSIFFTLEPKI 134
           GE      KV H  P LSL   +N  DLR F  R+     YR+          +  E KI
Sbjct: 66  GEPLSGFAKVVHDTPMLSLANAFNEADLRDFDRRVRETAGYRYE---------YVCELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I+++YE G FV  + RGDG  GED++A +R + +IP  L LN P  IE RGE ++ 
Sbjct: 117 DGLAISLKYENGLFVQGSTRGDGTIGEDITANLRTVRSIP--LRLNEPVTIEARGECFMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F ALN      G +P+ANPRNAA+G LR+L+P    +R L+ F++ +G T+ +    
Sbjct: 175 KKSFEALNRIKEENGEEPFANPRNAAAGSLRQLDPKIAASRNLDTFMYAIGDTTGLDISA 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  ++ LG  VN   R       ++ +  E    R  LPY+IDG+V KV++++ + 
Sbjct: 235 HSEGLAYLKRLGLKVNKETRICRDIGEVLKFIAEWTEKRPALPYEIDGIVIKVNDYAQEA 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   +SPRW I++KF  ++  T+L  I++++GRTG++TP A L PV + G  +  ATL
Sbjct: 295 ALGTTVKSPRWAIAYKFPAEEVVTKLTGIEVKVGRTGVVTPTAILNPVRVAGTTVQRATL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED I+            +DIR+GD V+VK+AG++IP+VV  I   R  + Q FS PS 
Sbjct: 355 HNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVRPIPERRTGEEQAFSMPSH 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +VR  +        A RC     C AQ  E L HFVSR+A NIEGLG++ +  
Sbjct: 404 CPDCGSELVRLEDE------VALRCINP-NCPAQIREGLIHFVSRNAMNIEGLGEKVISQ 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F  E     I   ADI+ L++ +     ++      G+ SV+NL  +I   +  SLE+ 
Sbjct: 457 LFAHE----LIHNVADIYRLKKEELLQLERM------GEKSVSNLLAAIEASKKNSLEKL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIRHVGA+ A+ LA ++ + +  ++               L  +P +G+ +A +I 
Sbjct: 507 LFGLGIRHVGAKAAKILAAHFETMERLSKATRE----------ELEAIPDIGEKMADSIA 556

Query: 614 EFYQNPRNICAVEAL----LKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +++N   +  V  L    +  V     R EK N  S    K +V TG L  + R++A+E
Sbjct: 557 AYFENEEALGLVRELAALGVNMVYKGPKRAEKRNADSPFAGKTVVLTGKLVNMTRNEAKE 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +  LGA V+  +S+ TD++I G++ G+KL KA+QLG+++ +E  FL
Sbjct: 617 KLEALGANVTGSVSKNTDLVIAGEDAGTKLTKAEQLGIEVWDEAAFL 663


>gi|262165212|ref|ZP_06032949.1| DNA ligase [Vibrio mimicus VM223]
 gi|262024928|gb|EEY43596.1| DNA ligase [Vibrio mimicus VM223]
          Length = 682

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/727 (35%), Positives = 400/727 (55%), Gaps = 70/727 (9%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E  ++    + L  L Q +  H   YY    P I D+EYD L R    +  A P+L    
Sbjct: 9   ERFTMSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI--- 65

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDL----RKFITRIYRFWQKKDDNS 125
            P+ P  ++GG        V H IP LSL+  ++  +L    R+   RI    Q      
Sbjct: 66  TPDSPSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSH---- 121

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184
             F  EPK+DG  +++ YE G    AA RGDG +GE+++  +R I +IP R+   + P  
Sbjct: 122 --FCCEPKLDGLAVSLLYENGVLTRAATRGDGATGENITENVRTINSIPLRLQGSDFPVR 179

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG 242
           +EVRGEV++ K  F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + 
Sbjct: 180 LEVRGEVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLD-SRITAQRPLAFYAYS 238

Query: 243 LG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           +G     E+ A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+ID
Sbjct: 239 VGIIDGGEL-ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEID 297

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVD+  LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP
Sbjct: 298 GVVIKVDDIQLQERLGFVARAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEP 357

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V +++  
Sbjct: 358 VFVGGVTVSNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLER 406

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+P  FP+ CP+CQS + R      G+ VA  RCTGGL C AQ+ E LKHFVSR A
Sbjct: 407 RPIDAKPIVFPACCPVCQSEIER----IEGEAVA--RCTGGLICQAQRKEALKHFVSRKA 460

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +++GLG + ++     E     +  PAD+F L+  + T   ++      G  S  N+ D
Sbjct: 461 MDVDGLGDKVIEQLVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVID 510

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++NK +  +L RF+++LGIR VG   A +LA+++L+    AQ   +           LI 
Sbjct: 511 ALNKAKQTTLPRFLYALGIREVGEATALNLAQHFLTLDAIAQASMD----------QLIE 560

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKL 652
           VP VG ++A  +  F+   RN   +  L++         V+ SI        S +  K +
Sbjct: 561 VPDVGGVVASHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIA-----ADSALAGKVV 615

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+  ++ R+ A+  +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E+
Sbjct: 616 VLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQ 675

Query: 713 QFLFLLQ 719
             +  L+
Sbjct: 676 ALIDFLK 682


>gi|217972882|ref|YP_002357633.1| DNA ligase, NAD-dependent [Shewanella baltica OS223]
 gi|254781416|sp|B8EEK5|DNLJ_SHEB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217498017|gb|ACK46210.1| DNA ligase, NAD-dependent [Shewanella baltica OS223]
          Length = 685

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 257/716 (35%), Positives = 395/716 (55%), Gaps = 63/716 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  ++
Sbjct: 12  EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P     ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 72  SPT---QRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRV-----TDKVGEVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG-- 244
           GE ++ K  F ALND   A   K + NPRNAA+G LR+L+ + IT  R L F+ + LG  
Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLD-SKITAARSLAFYAYALGVV 242

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              S   AK  +E LQ+++  G PV++ ++       +  YY ++ + RS L ++IDG+V
Sbjct: 243 EPDSHPLAKTHFEQLQQLKSWGLPVSSEIKVCAELSQVYDYYKDILTRRSDLAFEIDGVV 302

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++   Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +
Sbjct: 303 MKVNDIDQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 362

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN + I  L            I+VGD V+++RAG+VIP++V I+   R  
Sbjct: 363 GGVTVSNATLHNANEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPE 411

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            A    FP  CP+C S V R      G+ VA  RC+GGL C AQ+ E +KHF SR A +I
Sbjct: 412 TATDIVFPHNCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDI 465

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I 
Sbjct: 466 DGMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIE 515

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIR VG   A +LA ++ S    A  +  +          L  V  
Sbjct: 516 AAKTTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTEVED 565

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSE---IENKKLVFTGT 657
           VG ++AQ +  F+  P N+  ++AL+     + G H   +   S+E   ++ +  V TGT
Sbjct: 566 VGAVVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSAEAQPLKGQTWVLTGT 620

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           L ++ R+ A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+M+E++
Sbjct: 621 LNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676


>gi|332977611|gb|EGK14379.1| NAD-dependent DNA ligase LigA [Psychrobacter sp. 1501(2011)]
          Length = 695

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/724 (36%), Positives = 399/724 (55%), Gaps = 57/724 (7%)

Query: 9   IEALSIEQAR--KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I++L+ EQ     ++ +L  E+  H++ YY   +P I D+EYD L+     +   +PDL 
Sbjct: 17  IKSLNQEQQDIVAKMRTLITEVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEERYPDLT 76

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           +S+ P      +G     S  +V H IP LSL  ++N E+L +F+ R+       + N  
Sbjct: 77  QSDSPTA---SVGDNPLPSFSQVQHDIPMLSLGNVFNKEELAEFMRRVNDRLSSNNKNPA 133

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EII 185
           +  +E K+DG  ++++Y+ G+FV    RGDG +GED++  ++ I  IP VL      E++
Sbjct: 134 Y-EMELKLDGLAVSLKYQNGRFVRGVTRGDGQTGEDITQNVKTINNIPLVLEAAFDIEVL 192

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV + K  F  LN E   V  K +ANPRNAA+G LR+L+P     R L F+ + + 
Sbjct: 193 EVRGEVLMPKAGFERLNREAKQVDGKIFANPRNAAAGSLRQLDPAVAANRPLAFYAYSVN 252

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +        Q E L  ++ +GF V+  V+  N      +YY  +   RS LP++IDG V 
Sbjct: 253 QGLPEHIVNQSEALDWLKEIGFTVS-AVKVVNDLEEAQAYYESVIEERSGLPFEIDGTVI 311

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG  +R PRW  ++KF  +   T+L  I+ Q+GRTG +TPV +LEPV +G
Sbjct: 312 KVDNLQLQSELGYLSREPRWATAYKFPAETVMTKLNAIEWQVGRTGQITPVGKLEPVQVG 371

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++N TLHN   I+ L           D+R GD V V RAG+VIPKV  +    R  D
Sbjct: 372 GVTVSNVTLHNIGEIQRL-----------DVRAGDTVSVHRAGDVIPKVTRVWHELRPED 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           +QP + P+ CP+C S VV       G+ +A  RCTG L C AQQ E L HFVSR A +I+
Sbjct: 421 SQPVTLPTHCPVCDSPVVL----PEGEALA--RCTGELFCPAQQQEALIHFVSRKAMDID 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ L  FF+       ++  ADI+ L++ ++     + N    G+ SV NL  +I  
Sbjct: 475 GLGERWLISFFEQ----GIVKTVADIYHLEQHREA----LINFEKLGEKSVNNLLAAIEN 526

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RFI+++GI+ VG   A++LAK++           ++ A  +    SL  VP +
Sbjct: 527 SKKTTLSRFIYAIGIKGVGETTAQNLAKHF----------GDLPALMDASIESLEAVPDI 576

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGTL 658
           G I A+ I +F++   N+  +EAL++      G H + V         ++ +  V TGTL
Sbjct: 577 GTITAEQIYDFFRAKHNVEVIEALIE-----AGVHWEKVEQVVAEGLPLDGETWVITGTL 631

Query: 659 --QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
               + R  A+  +  LGA VS  +S KT  ++ G+  GSKL KAQQLGV+++ E +FL 
Sbjct: 632 VESGMSRDDAKSKLQALGAKVSGSVSAKTSALLAGEKAGSKLTKAQQLGVRVVEEAEFLQ 691

Query: 717 LLQQ 720
           ++Q+
Sbjct: 692 MIQE 695


>gi|332766219|gb|EGJ96429.1| DNA ligase, NAD-dependent [Shigella flexneri 2930-71]
          Length = 647

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 247/686 (36%), Positives = 397/686 (57%), Gaps = 52/686 (7%)

Query: 41  PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100
           P I D+EYD L R    +    P+L     P+ P  ++G     +  ++ H +P LSL+ 
Sbjct: 4   PEIPDAEYDRLMRELRELETKHPELI---TPDSPTQRVGAAPLAAFSQIRHEVPMLSLDN 60

Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160
           +++ E    F  R+    + K++  + +  E K+DG  ++I YE G  V AA RGDG +G
Sbjct: 61  VFDEESFLAFNKRVQD--RLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTG 118

Query: 161 EDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNA 219
           ED+++ +R I  IP ++   NIP  +EVRGEV++ +  F  +N++    G K +ANPRNA
Sbjct: 119 EDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNA 178

Query: 220 ASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276
           A+G LR+L+P     R L FF +G+G  +  E+       +LQ  +  G PV++ V    
Sbjct: 179 AAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQ-FKKWGVPVSDRVTLCE 237

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
           +   ++++Y++++  R TL +DIDG+V KV+    Q+QLG  AR+PRW ++ KF  ++  
Sbjct: 238 SAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQEQM 297

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           T + D++ Q+GRTG +TPVARLEPV++ G L++NATLHN D I+ L            +R
Sbjct: 298 TFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERL-----------GLR 346

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           +GD+V+++RAG+VIP+VV+++++ER  D +   FP+ CP+C S V R      G+ VA  
Sbjct: 347 IGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVER----VEGEAVA-- 400

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RCTGGL C AQ+ E LKHFVSR A +++G+G + +D   + E     +  PAD+F L   
Sbjct: 401 RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKE----YVHTPADLFKL--- 453

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
              +  K+  +   G     N+ +++ K +  +  RF+++LGIR VG   A  LA Y+ +
Sbjct: 454 ---TAGKLTGLERMGPKLAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGT 510

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE----V 632
            +  A E  +I          L +VP VG ++A  +  F+    N   +  LL E     
Sbjct: 511 LE--ALEAASI--------EELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWP 560

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P +   E+ + S    K +V TG+L ++ R  A+  + +LGA V+  +S+KTD++I G+
Sbjct: 561 APIVINAEE-IDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGE 619

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLL 718
             GSKL KAQ+LG+++++E + L LL
Sbjct: 620 AAGSKLAKAQELGIEVIDEAEMLRLL 645


>gi|229523238|ref|ZP_04412645.1| DNA ligase [Vibrio cholerae TM 11079-80]
 gi|229339601|gb|EEO04616.1| DNA ligase [Vibrio cholerae TM 11079-80]
          Length = 669

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L + +  H   YY    P I D+EYD L R    +  A P+L  S+ P+    ++
Sbjct: 6   QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK+DG  
Sbjct: 63  GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ Y+ G    AA RGDG +GE+++  +R I +IP R+   + P  +EVRGEV++ K  
Sbjct: 121 VSLLYQNGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253
           F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G  +  E+ A  
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  LQ+
Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLVYEIDGVVIKVDDIQLQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATL
Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   FP+ 
Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQS V R      G+ VA  RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ 
Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L +F
Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A +LA+++LS +   Q                I VP VG ++A  + 
Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLQ 561

Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+  + 
Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|262172020|ref|ZP_06039698.1| DNA ligase [Vibrio mimicus MB-451]
 gi|261893096|gb|EEY39082.1| DNA ligase [Vibrio mimicus MB-451]
          Length = 670

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 255/718 (35%), Positives = 397/718 (55%), Gaps = 70/718 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L  L Q +  H   YY    P I D+EYD L R    +  A P+L     P+ P  ++
Sbjct: 6   QRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDSPSLRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDL----RKFITRIYRFWQKKDDNSIFFTLEPKI 134
           GG        V H IP LSL+  ++  +L    R+   RI    Q        F  EPK+
Sbjct: 63  GGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSH------FCCEPKL 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  +++ YE G    AA RGDG +GE+++  +R I +IP R+   + P  +EVRGEV++
Sbjct: 117 DGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVFM 176

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEI 249
            K  F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G     E+
Sbjct: 177 PKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLD-SRITAQRPLAFYAYSVGIIDGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+ 
Sbjct: 236 -ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDI 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++
Sbjct: 295 QLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+P  
Sbjct: 355 NATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+CQS + R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++GLG +
Sbjct: 404 FPACCPVCQSEIER----IEGEAVA--RCTGGLICQAQRKEALKHFVSRKAMDVDGLGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +
Sbjct: 458 VIEQLVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+++LGIR VG   A +LA+++L+    AQ   +           LI VP VG ++A
Sbjct: 508 LPRFLYALGIREVGEATALNLAQHFLTLDAIAQASMD----------QLIEVPDVGGVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +  F+   RN   +  L++         V+ SI        S +  K +V TG+  ++
Sbjct: 558 SHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIA-----ADSALAGKVVVLTGSFTQL 612

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R+ A+  +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E+  +  L+
Sbjct: 613 SRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQALIDFLK 670


>gi|154685157|ref|YP_001420318.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens FZB42]
 gi|166215394|sp|A7Z261|DNLJ_BACA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154351008|gb|ABS73087.1| LigA [Bacillus amyloliquefaciens FZB42]
          Length = 669

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 407/712 (57%), Gaps = 53/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A+     L + I  +   YY   +P + DSEYD L +   AI    P+L     P+ P
Sbjct: 5   ETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +  S  KV H  P LSL   +N +DLR F  R+ +       + + + +E KI
Sbjct: 62  TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAV----GDGVAYNVELKI 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  N+   IEVRGE Y+ 
Sbjct: 118 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLS--IEVRGEAYMP 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+  + 
Sbjct: 176 KQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 235

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + L  +  LGF  N   ++  T   ++    E+++ R+ LPY+IDG+V KVD    Q+
Sbjct: 236 QSQGLDFLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQE 295

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+L
Sbjct: 296 ELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASL 355

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED IK            +DIR+ D+V+VK+AG++IP+VV++++ +R  + + F+ P+ 
Sbjct: 356 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTG 404

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ +  
Sbjct: 405 CPECESELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+       +R  AD++ L + Q     ++E +   G+ S  NL  SI K +  SLER 
Sbjct: 458 LFRE----HLVRNVADLYKLTKEQ---VIRLERM---GEKSTDNLISSIQKSKENSLERL 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR +G++ A++LA ++ S +N  Q               L+ V  +G+ +A A++
Sbjct: 508 LFGLGIRFIGSKAAKTLAMHFESLENLKQVTEE----------ELLAVDEIGEKMADAVI 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668
            +++    +  +  L +    ++ +  K V +E        K +V TG L+++ R++A+ 
Sbjct: 558 TYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKA 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  ++  +S+KTD++I G+  GSKL KAQ+L +++ NE Q L  L++
Sbjct: 618 QIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEAQLLGELKK 669


>gi|94676849|ref|YP_588544.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|123260587|sp|Q1LU20|DNLJ_BAUCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94219999|gb|ABF14158.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 671

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/714 (36%), Positives = 396/714 (55%), Gaps = 55/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++Q  + +  L Q++ Y +  YY    P + D EYD L  +   +   +PDL  ++ P  
Sbjct: 1   MKQIEQYIEQLRQQLRYWNFLYYAKDAPEVSDVEYDWLMMKLRELERQWPDLKTADSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
               IG +      KV H +P LSL+ I+N      F  RI R   +  +N + +  E K
Sbjct: 60  --QHIGYKAQSKFRKVIHEVPMLSLDHIFNDTSFLAFDRRI-RNRLQYGNNYLTYCCELK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEV 191
            DG  +++ Y+ GK + AA RGDGH GEDV+  IR I +IP  L  +  IP +IE+RGEV
Sbjct: 117 FDGIAVSLLYKHGKLIRAATRGDGHIGEDVTDNIRTICSIPLQLKDDGHIPRLIEIRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEI 249
            +S++ F  LN+       K +ANPRNAA+G LR+++P+   TR L+FF +G+G+  S+ 
Sbjct: 177 IMSEDAFRHLNETAKKNKSKRFANPRNAAAGSLRQVDPSITATRLLSFFCYGVGRIDSKK 236

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E+LQ+ +  G PV+N  R       ++ +Y+ +  +RS L ++IDG+V KV+  
Sbjct: 237 IPAAHLELLQQFKIWGLPVSNYRRYCVGHQEVLDFYSYVSKVRSKLGFNIDGIVIKVNAL 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW I++K    +  T + +ID Q+GRTGI+TPVARL+PV I GA I+
Sbjct: 297 VQQQQLGFVARAPRWAIAYKLPANEQLTEIQNIDFQVGRTGIITPVARLKPVYISGAYIS 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NA+LH+   IK L            +R+GD V+++ AG +IP++V+++V++R     P  
Sbjct: 357 NASLHSFAEIKRL-----------GLRIGDTVVIRLAGNIIPQIVNVVVSKRSIKTSPVL 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           +P +CP+C S+V ++   KT        CT G+ CSAQ  E LKHFVSR A NI G+G +
Sbjct: 406 YPLYCPVCGSKVKQNNKEKT------IICTAGMICSAQLKEALKHFVSRRAMNIYGMGGK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     +     I+ P D+F L + Q T    +      G      L D+I   +  +
Sbjct: 460 IIDQLVDLK----IIQNPVDLFRLNQDQLTCLKNM------GQKKTKKLLDAIEYAKKTT 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF++++GIR +G   A  LA YY       + I+ ++A    D  SL ++  +G I+A
Sbjct: 510 FARFLYAIGIREIGETKAAYLADYY-------KHIDALMAA---DIESLTKIQDIGIIVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRH 664
             ++ F+ N  NI  +E L    SP IG       EKN  +    K +VFTGTL  + R 
Sbjct: 560 TNVLNFFHNKHNIAIIEEL---CSPKIGIKFLSTLEKN--NYFSGKNIVFTGTLAFLSRE 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A + +  LGA + + +S K D++I G N G KL KA+QL +KI+ E +F  +L
Sbjct: 615 EAIDMLIALGARIRSSVSSKIDLLIAGKNTGFKLTKAKQLQIKIIEEAEFYQIL 668


>gi|308172548|ref|YP_003919253.1| DNA ligase [Bacillus amyloliquefaciens DSM 7]
 gi|307605412|emb|CBI41783.1| DNA ligase [Bacillus amyloliquefaciens DSM 7]
 gi|328910657|gb|AEB62253.1| DNA ligase [Bacillus amyloliquefaciens LL3]
          Length = 669

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 407/712 (57%), Gaps = 53/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A+     L + I  +   YY   +P + DSEYD L +   AI    P+L     P+ P
Sbjct: 5   ETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +  S  KV H  P LSL   +N +DLR F  R+ +       + + + +E KI
Sbjct: 62  TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAV----GDGVAYNVELKI 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  N+   IEVRGE ++ 
Sbjct: 118 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLS--IEVRGEAFMP 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+  + 
Sbjct: 176 KQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 235

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + L  +  LGF  N   +Q  T   ++    E+++ R+ LPY+IDG+V KVD    Q+
Sbjct: 236 QSQGLDFLDELGFKTNQERKQCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQE 295

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+L
Sbjct: 296 ELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASL 355

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED IK            +DIR+ D+V+VK+AG++IP+VV++++ +R  + + F+ P+ 
Sbjct: 356 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTV 404

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ +  
Sbjct: 405 CPECESELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+       +R  AD++ L + Q     ++E +   G+ S  NL  SI K +  SLER 
Sbjct: 458 LFRE----HLVRNVADLYKLTKEQ---VIRLERM---GEKSTDNLISSIQKSKENSLERL 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR +G++ A++LA ++ S +N  Q               L+ V  +G+ +A A++
Sbjct: 508 LFGLGIRFIGSKAAKTLAMHFESLENLKQATEE----------ELLAVDEIGEKMADAVI 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668
            +++    +  +  L +    ++ +  K V +E        K +V TG L+++ R++A+ 
Sbjct: 558 TYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKT 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  ++  +S+KTD++I G+  GSKL KAQ+L +++ +E Q L  L++
Sbjct: 618 QIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWDEAQLLGELKK 669


>gi|167647059|ref|YP_001684722.1| NAD-dependent DNA ligase [Caulobacter sp. K31]
 gi|190359242|sp|B0T1N5|DNLJ_CAUSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167349489|gb|ABZ72224.1| DNA ligase, NAD-dependent [Caulobacter sp. K31]
          Length = 792

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/582 (41%), Positives = 340/582 (58%), Gaps = 36/582 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +  L+  QA +EL  L  +++ HD  Y+Q   P I D+EYDALKRR   I   FP L 
Sbjct: 4   IAVADLTEAQAAEELERLADDLAAHDLRYHQQDAPTISDAEYDALKRRNLDIEDRFPHLV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    N P  ++G         V H +P LSL+  ++ ++  +F  RI RF +  ++  +
Sbjct: 64  RD---NSPSMRVGAARAEQFSPVEHGVPMLSLDNAFSNDEATEFDARIRRFLRLTNE-PV 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------SLN 180
           F+T EPKIDG   ++RYEKG  V  A RGDG  GEDV+A +R I  IP  L         
Sbjct: 120 FYTAEPKIDGLSASLRYEKGVLVQGATRGDGRMGEDVTANLRTIADIPHRLRGGDPQGGG 179

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P++IE+RGEVY+    F A N   +  G++ YANPRN A+G LR+++P     R L FF
Sbjct: 180 WPDVIEIRGEVYVELEAFAAFNAAALEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFF 239

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGF----PVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
            +  G TSE FA  Q+E L K+R  GF    P    V+ A    G++  Y + +  R  L
Sbjct: 240 AYAWGLTSEGFAATQWEALGKLRDWGFVTTAPPAERVQDA---QGLLDIYAKFEVERPKL 296

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            +DIDG+VYKVD+   Q++LG  +RSPRW I+ KF  +QA T L  ID+Q+GRTG +TPV
Sbjct: 297 AFDIDGVVYKVDDLEQQRRLGFVSRSPRWAIARKFPAQQARTILEAIDLQVGRTGAITPV 356

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           ARL+PV +GG  +TNATLHN D I             +D+R+GD V+++RAG+VIP++V 
Sbjct: 357 ARLKPVTVGGVSVTNATLHNADEI-----------ARKDVRIGDTVILQRAGDVIPQIVG 405

Query: 416 IIVNERHPDAQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            ++ ER   A PF FP+ CP   ++ +VR+ +   G      RC+G  AC  Q++E L+H
Sbjct: 406 PVLEERPAGAVPFEFPTHCPCHLETPLVRE-STAAGAETVVRRCSGEFACPFQRIEHLRH 464

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR AF+IEGLG++QL  FF+       I+ PADIF L  R +    ++    G+G+ S
Sbjct: 465 FVSRRAFDIEGLGEKQLAAFFEEG----WIKEPADIFKLA-RDEAKLAELRERDGYGETS 519

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
           V NL   I  RR I L+R I+ LG+R +G   +  LA+ + S
Sbjct: 520 VANLVKGIEARRTIGLDRVIYGLGMRDIGETTSTVLARNFAS 561



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 85/153 (55%), Gaps = 6/153 (3%)

Query: 569 SLAKYYLSYQNFAQEINNI-IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           +LA+ Y  +  FAQ +         +D+L L  +  +G + AQ+I  F+    N   V  
Sbjct: 641 ALAERYGDWDTFAQALAQAGQGAPGEDYLQLAAIDGIGPVAAQSIARFFAEAHNREKVAN 700

Query: 628 LLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L+ E  + P     +    + +  K +VFTG L+K+ R +A+     LGA V++ +S+KT
Sbjct: 701 LIAELDIQPVA---KPKTDTAVAGKTIVFTGALEKMTRDEAKAQAEGLGAKVASSVSKKT 757

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           D+++ G   GSKL+ A +LG+++M E+++L ++
Sbjct: 758 DLVVAGPGAGSKLKTATELGIQVMTEDEWLAMV 790


>gi|108803178|ref|YP_643115.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941]
 gi|122976160|sp|Q1AZ75|DNLJ_RUBXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|108764421|gb|ABG03303.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941]
          Length = 685

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 258/722 (35%), Positives = 394/722 (54%), Gaps = 59/722 (8%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           ++IP  A  + +AR+ +  L ++I YH+  YY    P I D+EYDAL R  + +   FP+
Sbjct: 8   RIIPPVAEKLAEARQRVEELREQIRYHNRKYYVEDAPEISDAEYDALYRELEELESRFPE 67

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L     P+ P  ++GGE      +V H++P LSL+    +E+LR++  R+ R    +++ 
Sbjct: 68  LV---TPDSPTQRVGGEPLEEFEEVRHAVPMLSLQNARRVEELREWDARVRRLLGPEEEG 124

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + +  E KIDG  +++RYE G+ V  A RG+G  GEDV+  +R I ++P  L  + P +
Sbjct: 125 RLRYVTELKIDGLAVSLRYENGRLVRGATRGNGFVGEDVTRQLRTIRSVPDRLDDDPPGV 184

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +E RGEVYI   DF   N      G +P+ANPRN A+G +R+L+P     R L  +++G+
Sbjct: 185 LEPRGEVYIKLKDFEEFNRRRQERGERPFANPRNLAAGSVRQLDPRVTARRPLTIYLYGV 244

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHG----IVSYYNEMKSIRSTLPYDI 299
           G+  E F +   E L  +R  G  VN      +T HG    ++         R  L + +
Sbjct: 245 GEGYENF-ESHSEALAALRRYGLRVN-----PHTVHGDIDSVIEECGRWAKKREALDFQV 298

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KVD    Q++LG   ++PRW I++KF      TRL DI + +GRTG LTP A LE
Sbjct: 299 DGVVVKVDSREQQERLGAVQKAPRWAIAYKFEPLAGRTRLRDIVVTVGRTGALTPQAVLE 358

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PVN+GG  I+ ATLHNEDYIK            + I +GD V+V+RAG+VIP+VV  +  
Sbjct: 359 PVNVGGVTISRATLHNEDYIK-----------EKGILIGDTVIVERAGDVIPQVVRPVPE 407

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           ER  D + F  P  CP+C  RV R      G+ +   RC   + C AQ LE + H+ SR 
Sbjct: 408 ERDGDEEEFRMPERCPVCGERVSR----PEGEAIT--RCA-NVRCPAQALEHIIHWASRG 460

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG++     F   D    IR  AD++ L+  Q      +  + G G+ S  NL 
Sbjct: 461 AMDIEGLGEKLARKLF---DLGL-IRDVADLYELRAEQ------LAPLEGLGEKSAQNLI 510

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I + +    +R +F LGIRHVG+  A  +A+ +       +E+   +         L 
Sbjct: 511 RAIERSKERPFDRVLFGLGIRHVGSATAELIAERF-----SGEELLRGVGVEE-----LT 560

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTG 656
           ++  VG+I+A+A+VE++    N   V  L++      P  G+ E+   S    ++LV TG
Sbjct: 561 QIEGVGEIVARAVVEYFSLEENRKLVRRLMEHGLNFGPVRGKPEEGPLS---GRRLVITG 617

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL +  R +  + +   G  V++ +SR TD ++ G+NPGSKLE+A++LGV +++EE    
Sbjct: 618 TLSR-PRSEISDLIEGAGGTVTSSVSRNTDYLVAGENPGSKLERARELGVPVLDEEGLRR 676

Query: 717 LL 718
           LL
Sbjct: 677 LL 678


>gi|328552313|gb|AEB22805.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens TA208]
          Length = 668

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 407/712 (57%), Gaps = 53/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A+     L + I  +   YY   +P + DSEYD L +   AI    P+L     P+ P
Sbjct: 4   ETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTPDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +  S  KV H  P LSL   +N +DLR F  R+ +       + + + +E KI
Sbjct: 61  TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAV----GDGVAYNVELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  N+   IEVRGE ++ 
Sbjct: 117 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLS--IEVRGEAFMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+  + 
Sbjct: 175 KQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + L  +  LGF  N   +Q  T   ++    E+++ R+ LPY+IDG+V KVD    Q+
Sbjct: 235 QSQGLDFLDELGFKTNQERKQCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQE 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+L
Sbjct: 295 ELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED IK            +DIR+ D+V+VK+AG++IP+VV++++ +R  + + F+ P+ 
Sbjct: 355 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTV 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ +  
Sbjct: 404 CPECESELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+       +R  AD++ L + Q     ++E +   G+ S  NL  SI K +  SLER 
Sbjct: 457 LFRE----HLVRNVADLYKLTKEQ---VIRLERM---GEKSTDNLISSIQKSKENSLERL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR +G++ A++LA ++ S +N  Q               L+ V  +G+ +A A++
Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFESLENLKQATEE----------ELLAVDEIGEKMADAVI 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668
            +++    +  +  L +    ++ +  K V +E        K +V TG L+++ R++A+ 
Sbjct: 557 TYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKT 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  ++  +S+KTD++I G+  GSKL KAQ+L +++ +E Q L  L++
Sbjct: 617 QIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWDEAQLLGELKK 668


>gi|52313150|emb|CAH55605.1| DNA ligase (NAD dependent) [Bacillus amyloliquefaciens FZB42]
          Length = 668

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 407/712 (57%), Gaps = 53/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A+     L + I  +   YY   +P + DSEYD L +   AI    P+L     P+ P
Sbjct: 4   ETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTPDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +  S  KV H  P LSL   +N +DLR F  R+ +       + + + +E KI
Sbjct: 61  TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAV----GDGVAYNVELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  N+   IEVRGE Y+ 
Sbjct: 117 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLS--IEVRGEAYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+  + 
Sbjct: 175 KQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + L  +  LGF  N   ++  T   ++    E+++ R+ LPY+IDG+V KVD    Q+
Sbjct: 235 QSQGLDFLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQE 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+L
Sbjct: 295 ELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED IK            +DIR+ D+V+VK+AG++IP+VV++++ +R  + + F+ P+ 
Sbjct: 355 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTG 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ +  
Sbjct: 404 CPECESELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+       +R  AD++ L + Q     ++E +   G+ S  NL  SI K +  SLER 
Sbjct: 457 LFRE----HLVRNVADLYKLTKEQ---VIRLERM---GEKSTDNLISSIQKSKENSLERL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR +G++ A++LA ++ S +N  Q               L+ V  +G+ +A A++
Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFESLENLKQVTEE----------ELLAVDEIGEKMADAVI 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668
            +++    +  +  L +    ++ +  K V +E        K +V TG L+++ R++A+ 
Sbjct: 557 TYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKA 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  ++  +S+KTD++I G+  GSKL KAQ+L +++ NE Q L  L++
Sbjct: 617 QIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEAQLLGELKK 668


>gi|288554984|ref|YP_003426919.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4]
 gi|288546144|gb|ADC50027.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4]
          Length = 668

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/712 (36%), Positives = 401/712 (56%), Gaps = 62/712 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++A K + +L +++  +   YY   +P++ D+EYD L +   A+    P+L  SED   P
Sbjct: 4   QEAEKRVQTLREKLEEYGYHYYVLDQPLVTDAEYDQLMQELIALEGEHPELV-SED--SP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE      KV H IP LSL   +N +DLR F  R+    +++  +++ ++ E KI
Sbjct: 61  SVRVGGEPLPFFEKVEHQIPMLSLGNAFNDQDLRDFDRRV----RERVGDNVTYSCELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ YE GKFV  A RGDG  GED++  ++ IP IP  L L     +EVRGE Y+ 
Sbjct: 117 DGLAVSLTYENGKFVRGATRGDGTIGEDITNNLKTIPAIP--LKLKQEASLEVRGEAYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F ALN+     G + +ANPRNAA+G LR+L+P     R L+ F++ +G         
Sbjct: 175 KKSFEALNEAKSEAGEEKFANPRNAAAGSLRQLDPKIAAKRNLSIFIYAIGNAEGQDLAS 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E L  ++ LGF VNN  +   T   ++ Y NE    R+ LPY+IDG+V KVD    QK
Sbjct: 235 HHEGLAYLKELGFKVNNESKHCATIEEVIEYTNEWLDKRADLPYEIDGIVIKVDSIEQQK 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW  + KF  ++  T L DI++ +GRTG++TP A L+PV + G  +  A+L
Sbjct: 295 ELGFTAKSPRWATAFKFPAEEVVTVLRDIELSVGRTGVVTPTAILDPVVVAGTTVKRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED I+            +D+++GD V+VK+AG++IP+VV+++ + R    + FS P+ 
Sbjct: 355 HNEDLIR-----------EKDVKLGDTVIVKKAGDIIPEVVNVLTDRRDGRERDFSMPTH 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +VR      G++  A RC     C AQ  E L HFVSR A NI+GLG++ +  
Sbjct: 404 CPECESELVR----LEGEV--ALRCINP-ECPAQIREGLIHFVSRQAMNIDGLGEKVIAQ 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+ +     I   AD++ L R   +   K+E +   G+ SV NL  +I   +  SLE+ 
Sbjct: 457 LFEHK----LIHTVADLYQLDR---SELLKLERM---GEKSVDNLMKAIEASKENSLEKL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR VG++ A++LA  + S       I+ II     D  +L+ V  +G+ +A +IV
Sbjct: 507 LFGLGIRFVGSKAAKTLAMEFES-------IDAII---EADEAALVAVNEIGEKMAASIV 556

Query: 614 EFYQNPRNICAVEALLKEV----------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            F++       V+ L+K +           P      +   S   NK +V TG L ++ R
Sbjct: 557 RFFETDE----VKELIKRLQSYGVNTTYKGPKPVNGTEAAESPFANKTVVLTGKLYEMTR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A+E +  LG  V+  +S+KTDI+I G++ GSK +KA++LG++I +E   L
Sbjct: 613 DEAKEKIETLGGKVTGSVSKKTDIVIAGEDAGSKKKKAEELGIEIWDEAALL 664


>gi|311029281|ref|ZP_07707371.1| NAD-dependent DNA ligase LigA [Bacillus sp. m3-13]
          Length = 668

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 398/712 (55%), Gaps = 55/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQA K +  L   ++ ++  Y+   KP + D+EYD+L +    +    P+L ++ED   P
Sbjct: 4   EQAEKRVRELHDVLNQYNYEYHVLDKPSVSDAEYDSLLQELLTLEKEHPEL-QTED--SP 60

Query: 75  LNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++GG + L +F KV H  P LSL   +N +DLR F  R+    ++   + + +  E K
Sbjct: 61  TQRVGGNI-LEMFNKVEHRTPMLSLGNAFNEDDLRDFDRRV----KQAVGDDVTYVCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  +++RYE G FV  A RGDG +GED++  ++ I +IP  L L  P  +EVRGE Y+
Sbjct: 116 IDGLAVSLRYEDGLFVLGATRGDGTTGEDITMNLKTIKSIP--LRLKEPVTMEVRGEAYM 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            KN F  LN   +    +P+ANPRNAA+G LR+L+P    +R L+ +V+ L    E    
Sbjct: 174 PKNSFEKLNAAKMEREEEPFANPRNAAAGSLRQLDPKIAASRNLSVYVYSLADAGEAGVD 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E L  +  LGF  N   +   +   ++ Y     + R  L YDIDG+V KVD    Q
Sbjct: 234 SHSEALDYLDKLGFKTNTERKVCTSIEEVLEYVTAWHTKRPDLSYDIDGIVIKVDNTEHQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  A+SPRW I++KF  ++ +T+LLDI++ IGRTG++TP A LEPV + G  +  A+
Sbjct: 294 EQLGFTAKSPRWAIAYKFPAEEVTTKLLDIELNIGRTGVVTPTAILEPVRVAGTTVQRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I+            +DI++GD V+VK+AG++IP+VV+++V++R  + + F+ P+
Sbjct: 354 LHNEDLIR-----------EKDIKLGDTVIVKKAGDIIPEVVNVLVDQRTGEERDFTMPT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C+S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ + 
Sbjct: 403 HCPECESELVR----IEGEV--ALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEKVIA 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F+       I   AD++ L + Q     ++      G+ S  NL  +I K ++ SLER
Sbjct: 456 QLFREN----LIEDVADLYKLTKEQLLELERM------GEKSADNLISAIEKTKDNSLER 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIR VGA+ A++LA+ +      A+               L  +  +GD +A +I
Sbjct: 506 LLFGLGIRLVGAKAAKTLAQEFDHMDQLARLTKE----------ELTAIHEIGDKMADSI 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQ 667
           V +++ P     +  L +       +  K VS+E        K +V TG L+++ R+ A+
Sbjct: 556 VTYFEQPEVEELLAELKELGVNMAYKGPKPVSAEDVDSYFAGKTIVLTGKLEEMSRNDAK 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + QLG  V+  +S+ T ++I G+  GSKL KAQ+LG+++ NE Q L  +Q
Sbjct: 616 AAIEQLGGKVTGSVSKNTHLVIAGEEAGSKLTKAQELGIEVWNEAQMLKEIQ 667


>gi|221066629|ref|ZP_03542734.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
 gi|220711652|gb|EED67020.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
          Length = 708

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/697 (36%), Positives = 386/697 (55%), Gaps = 52/697 (7%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D EYD + ++ +A+  A+P L     P+ P  ++ G +   L  V H++P
Sbjct: 47  YYVLDAPTVPDGEYDRVYQQLEALEGAYPALV---TPDSPTQRVIGAVLDGLTPVRHAVP 103

Query: 95  TLSLEKIWNIE--DLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
            LS++   + E      F  R+ +         +I +  EPK DG  + +RYE G+ V A
Sbjct: 104 MLSIQTETDNEATGAMAFDQRVRKELGLDASAAAIEYVAEPKFDGLAMNLRYENGRLVQA 163

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
             RGDG  GEDV+  IR I  IP  L    N+P ++EVRGEV+++K D   LN    A G
Sbjct: 164 TTRGDGEVGEDVTHNIRTIRQIPLSLPADRNVPPVVEVRGEVHMAKADLEKLNARQQAAG 223

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG-----QYEMLQKMRC 263
            K +ANPRNAA+G +R+L+ +    R L+FF +GLG+ +     G      Y MLQ +R 
Sbjct: 224 AKTFANPRNAAAGSVRQLDSSIAAQRPLSFFAYGLGEITPPEQGGPDFGTHYAMLQTLRS 283

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
            GFPV   V  A     +V+++  + + R+ LPY+IDG+VYKV+  +LQ++LG ++R PR
Sbjct: 284 WGFPVAPQVALARGASELVAFHQRIGAERANLPYEIDGVVYKVNSLALQRRLGFKSREPR 343

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W ++HK+  ++  T +  ID+Q+GRTG LTPVARL PV +GG ++TNATL N   I+   
Sbjct: 344 WAVAHKYPAQEMPTLMEAIDVQVGRTGKLTPVARLAPVQVGGVVVTNATLSNLFDIR--- 400

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                    + +RVGD+V+V+RAG+VIP+VV  +  ER      F  P  CPIC S VVR
Sbjct: 401 --------KKGVRVGDQVIVRRAGDVIPEVVGRVPGERPVYVPNFRMPRTCPICASAVVR 452

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           +      K  A HRCTGGL C AQ+ E + HF  R A +IEGLG + +D     +     
Sbjct: 453 E------KGEANHRCTGGLFCGAQRKEAILHFAHRRAMDIEGLGDKLVDQLVDGQ----V 502

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           +R+  D++ L        + +  +    + S  N+  ++ K ++ +L+RF+F LGIR+VG
Sbjct: 503 VRVLPDLYRL------GLSSLAALDRMAEKSAQNVLAALEKSKSTTLQRFLFGLGIRNVG 556

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              AR LAK++        +++ I+  + ++   L++V  VG ++A +I  F+  P N  
Sbjct: 557 ESTARDLAKHF-------GKLDAIMDASVEE---LLQVKDVGPVVADSIHTFFAQPHNRE 606

Query: 624 AVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            VE L    V    G   +     +    +V TGTL  + R  A++ +   GA VS  +S
Sbjct: 607 VVEQLRACGVHWEEGEPVEKAPQILAGLTVVLTGTLPTLGRDVAKDMLEAAGAKVSGSVS 666

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +KT  ++ G   GSKL KA++LGV +++E   L LL+
Sbjct: 667 KKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLALLR 703


>gi|228995667|ref|ZP_04155330.1| DNA ligase [Bacillus mycoides Rock3-17]
 gi|228764044|gb|EEM12928.1| DNA ligase [Bacillus mycoides Rock3-17]
          Length = 669

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E+A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+    + P
Sbjct: 1   MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIEDSP 60

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
                ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD+++ +  
Sbjct: 61  T---VRVGGAV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+FV  A RGDG +GED++  ++ I  IP  L L     +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIP--LRLKEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LNDE    G   +ANPRNAA+G LR+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNDEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ  LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +VR L  +      A RC    AC AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACDSELVR-LEEEV-----ALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F+++     IR  AD++ L + Q     +      FG+ S + L  +I   +  S
Sbjct: 454 VITQLFEAD----YIRTFADLYPLTQEQLLQLER------FGEKSASKLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+LA+++ +  +  +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATEEELKEINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVS-----PSIGRHE-KNVSSEIENKKLVFTGTLQKIQR 663
           Q+IV ++ N  ++  +    KE         I R + +N++S    K +V TG L+ + R
Sbjct: 554 QSIVTYFDN-EDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ + +LG  V+  +S+ TD+++ G+  GSKL +A++  +++ NEE+FL
Sbjct: 613 SEAKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFL 664


>gi|229003296|ref|ZP_04161126.1| DNA ligase [Bacillus mycoides Rock1-4]
 gi|228757914|gb|EEM07129.1| DNA ligase [Bacillus mycoides Rock1-4]
          Length = 669

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E+A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+    + P
Sbjct: 1   MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIEDSP 60

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
                ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD+++ +  
Sbjct: 61  T---VRVGGAV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+FV  A RGDG +GED++  ++ I  IP  L L     +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIP--LRLKEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LNDE    G   +ANPRNAA+G LR+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNDEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ  LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +VR L  +      A RC    AC AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACDSELVR-LEEEV-----ALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F+++     IR  AD++ L + Q     +      FG+ S + L  +I   +  S
Sbjct: 454 VITQLFEAD----YIRTFADLYPLTQEQLLQLER------FGEKSASKLVQAIETSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+LA+++ +  +  +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATEEELKEINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVS-----PSIGRHE-KNVSSEIENKKLVFTGTLQKIQR 663
           Q+IV ++ N  ++  +    KE         I R + +N++S    K +V TG L+ + R
Sbjct: 554 QSIVTYFDN-EDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ + +LG  V+  +S+ TD+++ G+  GSKL +A++  +++ NEE+FL
Sbjct: 613 SEAKKKIEELGGKVAGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFL 664


>gi|258621988|ref|ZP_05717017.1| DNA ligase [Vibrio mimicus VM573]
 gi|258585741|gb|EEW10461.1| DNA ligase [Vibrio mimicus VM573]
          Length = 670

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/718 (35%), Positives = 397/718 (55%), Gaps = 70/718 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L  L Q +  H   YY    P I D+EYD L R    +  A P+L     P+ P  ++
Sbjct: 6   QRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDSPSLRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDL----RKFITRIYRFWQKKDDNSIFFTLEPKI 134
           GG        V H IP LSL+  ++  +L    R+   RI    Q        F  EPK+
Sbjct: 63  GGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSH------FCCEPKL 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  +++ YE G    AA RGDG +GE+++  +R I +IP R+   + P  +EVRGEV++
Sbjct: 117 DGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVFM 176

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEI 249
            K  F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G     E+
Sbjct: 177 PKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLD-SRITAQRPLAFYAYSVGIIDGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+ 
Sbjct: 236 -ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDI 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++
Sbjct: 295 RLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+P  
Sbjct: 355 NATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+CQS + R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++GLG +
Sbjct: 404 FPACCPVCQSEIER----IEGEAVA--RCTGGLICQAQRKEALKHFVSRKAMDVDGLGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +
Sbjct: 458 VIEQLVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+++LGIR VG   A +LA+++L+    AQ   +           LI VP VG ++A
Sbjct: 508 LPRFLYALGIREVGEATALNLAQHFLTLDAIAQASMD----------QLIEVPDVGGVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +  F+   RN   +  L++         V+ SI        S +  K +V TG+  ++
Sbjct: 558 SHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIA-----ADSALAGKVVVLTGSFTQL 612

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R+ A+  +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E+  +  L+
Sbjct: 613 SRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQALIDFLK 670


>gi|229015686|ref|ZP_04172669.1| DNA ligase [Bacillus cereus AH1273]
 gi|229021878|ref|ZP_04178448.1| DNA ligase [Bacillus cereus AH1272]
 gi|228739424|gb|EEL89850.1| DNA ligase [Bacillus cereus AH1272]
 gi|228745603|gb|EEL95622.1| DNA ligase [Bacillus cereus AH1273]
          Length = 669

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+    + P
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMGEDSP 60

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           +    ++GG + L +F KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  
Sbjct: 61  S---IRVGGTI-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTVVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC    AC AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIESSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKTINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|229131294|ref|ZP_04260196.1| DNA ligase [Bacillus cereus BDRD-ST196]
 gi|228652180|gb|EEL08115.1| DNA ligase [Bacillus cereus BDRD-ST196]
          Length = 669

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++Q+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 AIQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  D + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGDEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLELER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKTINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|262375659|ref|ZP_06068891.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
 gi|262309262|gb|EEY90393.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
          Length = 679

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 262/714 (36%), Positives = 392/714 (54%), Gaps = 59/714 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L Q ++ H+  YY   +P I DSEYD L  +  A+   +PDL +S+ P    +K+G
Sbjct: 10  QMRQLIQLLAKHNHAYYVMDQPSIEDSEYDQLFHQLKALEQQYPDLIQSDSPT---DKVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+       VTH++P LSL  ++N EDL  F  RI    ++  +  I + +E K DG  I
Sbjct: 67  GQALSKFVTVTHAVPMLSLGNVFNQEDLLAFARRIE---ERLPNQKIEYDVELKFDGLAI 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LN--IPEIIEVRGEVYISKN 196
           ++ YE G       RGDG +GED++  +R I  +P++LS +N  IP+++EVRGEV + K+
Sbjct: 124 SLWYEHGVLTRGVTRGDGETGEDITQNVRTIRNLPKLLSPVNGIIPDLLEVRGEVLMPKS 183

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN    A G K +ANPRNAA+G LR+L+P    +R L F+ +G+ +   +   GQ 
Sbjct: 184 GFEKLNAANAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQC--VPHHGQT 241

Query: 256 EM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            M   L+ +   GF V       ++   +   Y ++   R++L  +IDG+V KV++   Q
Sbjct: 242 TMSASLEWLHQFGFAVGERHFICDSIQDVQKVYEQIIDERASLSVEIDGMVIKVNDLKQQ 301

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +R PRW  ++KF    A T + +I+ Q+GRTG LTPVARL PV +GG  ++N T
Sbjct: 302 QQLGFLSREPRWATAYKFPAVAALTTVENINWQVGRTGTLTPVARLNPVAVGGVTVSNVT 361

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I  L           D+R+GD V V R+G+VIPKV  +    R  DA     P 
Sbjct: 362 LHNIGEIHRL-----------DVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDAVEVHLPE 410

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S VV       G+ +A  RC+GGL C+AQ++E ++HFVSR A +IEGLG    D
Sbjct: 411 QCPVCDSPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGLG----D 460

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            + +S      +   +DI+ L   ++T    +  I   G  SV NL D+I   +  +L  
Sbjct: 461 RWAESLLHLNLLNDVSDIYHLHEHRET----LLGIEKMGAKSVQNLLDAIENSKKTTLAA 516

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGIR VG   AR LA  + +     Q           D  +L + P VGDI A+ I
Sbjct: 517 FIYALGIRGVGETTARMLANTFQTLDALRQA----------DLEALKKTPDVGDITAEWI 566

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++F+Q P N+  ++ LL     + G H           +  +  V TGTL  + R  A +
Sbjct: 567 LDFFQAPHNLEVLDRLL-----AAGIHWDAPIAPTRQPLNGESWVVTGTLSSMGRDDATQ 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +  LGA VS  +S KT  ++ G+  GSKL+KA++LG+ ++NE+QF+ L+Q Y 
Sbjct: 622 LLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIPVINEQQFIGLMQDYG 675


>gi|323342976|ref|ZP_08083207.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463040|gb|EFY08235.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 659

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/700 (36%), Positives = 395/700 (56%), Gaps = 48/700 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           +++ + +L +++  ++  Y+   +P I D EYD L R  + +    P+     D N P  
Sbjct: 2   SKERILALRKKLHQYNYEYHVMDQPTIADVEYDQLLRELNELEVKHPEFF---DINSPTQ 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+GG ++    KVTH  P  SL   ++  DL  F  R+     +    ++ + +E KIDG
Sbjct: 59  KVGGVVSERFSKVTHRFPMFSLGNAFSRSDLEVFDERL-----RAQFPNVSYVVELKIDG 113

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             ++I YE G F+ A  RGDG  GEDV+  IR I +IP  L LNI E + VRGEV++   
Sbjct: 114 LAMSIDYEDGLFIQAVTRGDGTVGEDVTQNIRVIDSIP--LKLNIDEDVTVRGEVFMPVK 171

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  +N+         +AN RNAA+G +R+L+   + TR L+ F + L    E+    QY
Sbjct: 172 SFTRVNESRKENNEALFANCRNAAAGTIRQLDSKVVATRGLDGFWYTLVNAKELGITSQY 231

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L  ++ +GF VN  ++  NT   +     E++ +R++LPYDIDG+V KV++F++Q++L
Sbjct: 232 DSLTYLKQIGFKVNPEIKLCNTIDAVWQRIEEIEHMRASLPYDIDGVVIKVNDFAMQEEL 291

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++  TR+ DI + +GRTG +TP A+L PV I G+L++ ATLHN
Sbjct: 292 GFTVKTPRWAIAYKFKAEEVKTRVEDIFVTVGRTGKITPNAKLTPVQISGSLVSYATLHN 351

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI             +DIRVGD V+V++AGE+IP++V + V+ R    +P+ FP  CP
Sbjct: 352 EDYIT-----------NKDIRVGDEVVVRKAGEIIPEIVSVDVSNRTDVIKPYHFPKVCP 400

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C   +VR          A H C   + CSA+  E L HF SRDA NI+ LG++++   +
Sbjct: 401 VCMGHLVRFEGE------ADHYCV-NVDCSAKISEALVHFASRDAMNIDTLGERRV---Y 450

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +  D    +    DI+TLQ  +      +E +   G  S   L D+I   +N S+E+ IF
Sbjct: 451 QLHDAKL-LNTITDIYTLQEHKDA----LEKLEKMGPKSAEKLLDAIENSKNNSVEKLIF 505

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRHVGA+ +  LA YY       + I +++    D+   LI +  +G +IAQ++V F
Sbjct: 506 GLGIRHVGAKTSNVLAAYY-------KTIASLMDATYDE---LIEIDEIGGVIAQSVVSF 555

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++   N   +E LL E   +   +    SS+ E  K V TGTLQ + R  A++ +   G 
Sbjct: 556 FEIDHNRELIEDLL-ERGVNGNYNHVVTSSKFEGMKFVLTGTLQTMGRTDAKKMIESFGG 614

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            VS  +S KTD+++ G++ GSKL KAQ LGVK   EE+FL
Sbjct: 615 SVSGSVSSKTDVVVYGESAGSKLTKAQSLGVKTWTEEEFL 654


>gi|258627076|ref|ZP_05721872.1| DNA ligase [Vibrio mimicus VM603]
 gi|258580594|gb|EEW05547.1| DNA ligase [Vibrio mimicus VM603]
          Length = 670

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/718 (35%), Positives = 396/718 (55%), Gaps = 70/718 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L  L Q +  H   YY    P I D+EYD L R    +  A P+L     P+ P  ++
Sbjct: 6   QRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDSPSLRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDL----RKFITRIYRFWQKKDDNSIFFTLEPKI 134
           GG        V H IP LSL+  ++  +L    R+   RI    Q        F  EPK+
Sbjct: 63  GGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSH------FCCEPKL 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  +++ YE G    AA RGDG +GE+++  +R I +IP R+   + P  +EVRGEV++
Sbjct: 117 DGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVFM 176

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEI 249
            K  F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G     E+
Sbjct: 177 PKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLD-SRITAQRPLAFYAYSVGIIDGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+ 
Sbjct: 236 -ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDI 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++
Sbjct: 295 QLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+P  
Sbjct: 355 NATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+CQS + R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++GLG +
Sbjct: 404 FPACCPVCQSEIER----IEGEAVA--RCTGGLICQAQRKEALKHFVSRKAMDVDGLGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +
Sbjct: 458 VIEQLVDRE----MVSTPADLFRLRTGELTILERM------GPKSAQNVIDALNKAKQTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+++LGIR VG   A +LA+++L+    AQ   +           LI VP VG ++A
Sbjct: 508 LPRFLYALGIREVGEATALNLAQHFLTLDAIAQASMD----------QLIEVPDVGGVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +  F+   RN   +  L++         V+ SI        S +  K +V TG+  ++
Sbjct: 558 SHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIA-----ADSALAGKVVVLTGSFTQL 612

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R+ A+  +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E   +  L+
Sbjct: 613 SRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEHALIDFLK 670


>gi|281412160|ref|YP_003346239.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10]
 gi|281373263|gb|ADA66825.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10]
          Length = 688

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/705 (36%), Positives = 394/705 (55%), Gaps = 51/705 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E+  L +EI YH+  YY  + P+I D EYD L RR   +   +P+L     P+ P  ++
Sbjct: 12  EEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELERMYPELV---TPDSPTQRV 68

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++      V HS+P LSL+  +N E++ +F  R+ +  Q+ +   + +  E KIDG  
Sbjct: 69  GGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKTLQEAE---VEYVAELKIDGVS 125

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I +RYE GKFV  A RGDG  GEDVS  ++ + +IP  L L     +EVRGE+Y+  ++F
Sbjct: 126 IALRYENGKFVLGATRGDGIEGEDVSENVKTVRSIP--LRLRKLVTVEVRGEIYMPVDEF 183

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             LNDE    G  P+ANPRNAA+G LR+LN   +  R L+ F++ +        K Q+E 
Sbjct: 184 KRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSFIYYVVHPENYGLKTQWEA 243

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ ++ LGF VN   +       ++ Y+ E K  +  L Y +DG+V KV+ F  Q+ LGE
Sbjct: 244 LQFLKELGFKVNPHSKLCKNIQEVIDYWREWKERKKELDYWVDGVVVKVNRFDFQRILGE 303

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +++PRW I+ KF  +QA TR+LD+ IQ+GRTG+LTPVA LEPV + G ++  A+LHN +
Sbjct: 304 TSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELEPVQLAGTIVKRASLHNFE 363

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI+            +DIR+GD V V++AG +IP++V  I   R    +    P  CP+C
Sbjct: 364 YIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGSEKEIKPPDKCPVC 412

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
             +V + L+P+      A RC     C A+    L+  VSR+A +IEGLG++ +D     
Sbjct: 413 GGKVGK-LDPEE----VALRCLNP-HCPAKLKRALRTLVSREALDIEGLGEKLIDRLVD- 465

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  ++  ADIF L     T     +   G G  ++  +   I + +   L + I  L
Sbjct: 466 ---AGLVKDIADIFYL-----TPFDLAQLGPGIGQRTIAKILQEIEEAKKRPLHKLITGL 517

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI  VG + A+ LA+++ S +  A          +  + +L  +P +G  IA++IVE+++
Sbjct: 518 GIPMVGQKTAKILAEHFKSLEAIA----------DASYETLKDIPGIGPEIAKSIVEYFR 567

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQRHKAQEYVTQLGA 675
           NP+    +E L K     +   E+ +  +I  K L F  TGTL+   R +  E+  +LGA
Sbjct: 568 NPKTREIIEKLKK---AGVKLEERVMKLDI-LKGLTFAVTGTLKNFTREEIVEFFEKLGA 623

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V   +SR TD +IVG+NPGSK EKA+ L VK M+EE+FL  +++
Sbjct: 624 KVVNSVSRNTDYLIVGENPGSKYEKAKMLKVKTMSEEEFLEFVRK 668


>gi|259907817|ref|YP_002648173.1| NAD-dependent DNA ligase LigA [Erwinia pyrifoliae Ep1/96]
 gi|224963439|emb|CAX54927.1| DNA ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477688|emb|CAY73604.1| DNA ligase [Erwinia pyrifoliae DSM 12163]
          Length = 678

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 248/716 (34%), Positives = 418/716 (58%), Gaps = 55/716 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +    P+L  S+ P  
Sbjct: 1   MESVQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRDLEAQHPELLTSDSPTQ 60

Query: 74  PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            +    G   LS+F +V H +P LSL+  ++ E    F  R+    +  DD  I F  E 
Sbjct: 61  RV----GAAPLSVFEQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCEL 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  +++ YEKG+ V AA RGDG +GE+++A +R I  IP R+   NIPE +EVRGEV
Sbjct: 115 KLDGLAVSLLYEKGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSE 248
           ++    F  +N++  + G+K +ANPRNAA+G LR+L+P     R L FF +GLG  +  E
Sbjct: 175 FMPLVGFEQMNEQARSSGQKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  +     LQ+ +  G PV++ VR  ++   ++ +Y+++++ R TL +DIDG+V KVD 
Sbjct: 235 M-PRSHRARLQRFKAWGLPVSDRVRLCHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDS 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G ++
Sbjct: 294 LALQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVLVAGVMV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            +++GDRV+++RAG+VIP+V+ ++  E   +A+  
Sbjct: 354 SNATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVV--ETGDNAREI 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           +FP+ CP+C S V R      G++VA  RCTGGL C AQ+   LKHFVSR A +I+G+G+
Sbjct: 401 AFPTRCPVCGSDVER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D     E     ++ PA++F L      +  K+  +   G  S  N+ +++ K +  
Sbjct: 455 KIIDQLVDKE----YVKNPAELFEL------TAGKLTGLDRMGPKSAQNVVNALVKAKQT 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGI  VG   A +LA ++ +       ++ ++A + D   +L+ V  VG ++
Sbjct: 505 TFARFLYALGISEVGEATAANLAAHFGT-------LDALMAADLD---ALMAVQDVGKVV 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRH 664
           A  +  F     N+  +  L+ +   +  +      + + S    K +V TG+L  + R 
Sbjct: 555 ASHVRNFLDEESNLEIIRLLVDKAGVNWPQVMVVKAEEIDSPFAGKTVVLTGSLSILSRD 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A++ +  LGA VS  +S+KTD+++ G+  GSKL KA++LG+ +++E++ + LL +
Sbjct: 615 EAKDRLQALGAKVSGSVSKKTDLVVAGEAAGSKLAKARELGIDVIDEQEMIRLLGE 670


>gi|192361192|ref|YP_001982383.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107]
 gi|254781281|sp|B3PGQ8|DNLJ_CELJU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190687357|gb|ACE85035.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107]
          Length = 680

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/713 (35%), Positives = 401/713 (56%), Gaps = 58/713 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E++ L ++I YH+  YY   +P I D+EYD L +R   +   +P    S  P+ P  ++G
Sbjct: 13  EIAQLREQIRYHNYRYYALDEPQIPDAEYDRLMQRLRELEAQYP---ASVTPDSPTQRVG 69

Query: 80  GEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
               LS F+ V H IP LSL+  +   D+  F  RI    + K   +I +  E K+DG  
Sbjct: 70  A-APLSAFQTVEHQIPMLSLDNAFEEADVIAFNQRI--LDRLKSTENIEYACELKLDGLA 126

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ Y  G  V  A RGDG  GED++  +R I ++P ++L    P ++EVRGEVY+ K  
Sbjct: 127 VSLLYRDGVLVRGATRGDGSKGEDITQNLRTIASVPLKLLGEGYPAVLEVRGEVYMPKAG 186

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN++  + G K + NPRNAA+G LR+L+     +R L    + +G        G + 
Sbjct: 187 FNALNEKARSTGEKLFVNPRNAAAGALRQLDSRITASRPLEMCAYSVGLVEGGELPGTHT 246

Query: 257 -MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            +L  ++  GF  N     A+T    +++Y  +++ R +L YDIDG+V+KV+   LQ+ L
Sbjct: 247 GILAALKSWGFLTNKETATASTIADCIAFYQSIQARRDSLAYDIDGIVFKVNARELQESL 306

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I++KF  ++  T L D++ Q+GRTG +TPVARL+PV +GG  ++NATLHN
Sbjct: 307 GFISRAPRWAIAYKFPAQEEMTVLQDVEFQVGRTGAVTPVARLQPVFVGGVTVSNATLHN 366

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L            I +GD V+V+RAG+VIP++V ++ + R  DA+P  FP  CP
Sbjct: 367 RDEIQRL-----------GIMIGDTVIVRRAGDVIPQIVQVVESRRPTDARPVLFPDHCP 415

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S V      +T +  A  RC+GGL C+AQ+ E +KHF SR A ++EGLG + ++   
Sbjct: 416 VCGSPV------ETLEDEAIARCSGGLVCAAQRKEAIKHFASRKALDVEGLGDKLVEQLV 469

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
              D     ++ ADI+ L   Q  +  ++      G+ S  NL  ++   ++ +L +FI+
Sbjct: 470 ---DTGLVSKL-ADIYQLTGEQLAAMERM------GEKSADNLLQALEASKHTTLAKFIY 519

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR +G   AR+LA ++ S +  A+           D  +L++V  VG + A  + EF
Sbjct: 520 ALGIREIGEATARNLANHFGSLEKLAEA----------DEETLVQVNDVGPVGAHFVAEF 569

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKL-----VFTGTLQKIQRHKAQEY 669
           +    N  AV  L      + G H +++  S IE+  L     V TGTL+ + R  A+ +
Sbjct: 570 FAQESNRQAVADL-----RAAGIHWQDLDVSTIEDLPLKGLTYVLTGTLEVMSRDDAKAH 624

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  LGA V+  +S KTD ++ G   GSKL+KA++L + +M+EE  L LL+++ 
Sbjct: 625 LLALGAKVAGSVSAKTDYVVAGPGAGSKLQKARELNLNVMDEEALLDLLRKHG 677


>gi|296135970|ref|YP_003643212.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
 gi|295796092|gb|ADG30882.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
          Length = 688

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 247/712 (34%), Positives = 378/712 (53%), Gaps = 62/712 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q  +  + L  EI+  D  YY    P+  D++YDAL R    I    P+L     P+ P 
Sbjct: 9   QPAERAAQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPEL---RTPDSPT 65

Query: 76  NKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEP 132
            ++GG        V H++P LS+  E     E    F  R+  R     DD  + +  E 
Sbjct: 66  QRVGGAPLPEFAPVRHAVPMLSIQTETDTTPEGAVAFDQRVRNRLGLSADDPPVNYCAEL 125

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K DG  I++RYE G+ V AA RGDG +GEDV+  +R I ++P  L  N P ++EVRGE  
Sbjct: 126 KFDGLAISLRYEHGQLVQAATRGDGETGEDVTQNVRTIRSVPLQLRGNPPAVLEVRGEAL 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + + DF   N      G     NPRN A+G +R+L+P     R L F+ +G G+ ++   
Sbjct: 186 MKRADFERYNARQRDKGLPTLVNPRNGAAGSIRQLDPAIAAQRPLAFYAYGWGEIADWAQ 245

Query: 252 K--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           +    + ML      G PV            ++ ++  + + R +LP+DIDG+VYKVD  
Sbjct: 246 QPDTHHAMLDAFETFGLPVAPQRVHGPGAQTLIDFHARIAAARDSLPFDIDGVVYKVDSL 305

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG R R P W ++HK+  ++ ST+++ IDIQ+GRTG LTPVA+LEPV +GG  +T
Sbjct: 306 ALQRELGFRNREPVWAVAHKYPAQERSTKVIGIDIQVGRTGKLTPVAKLEPVFVGGVTVT 365

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPF 428
           NATLHNED ++            +D+RVGD V+V+RAG+VIP+VV ++++ R  D  +PF
Sbjct: 366 NATLHNEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVSVVMSARPADVGEPF 414

Query: 429 S----FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                    CP+C S +VR+         A  RCTGGL C+AQ+ + + H+ SR A +IE
Sbjct: 415 DLYQRLGGQCPVCGSAIVREAGE------ADWRCTGGLFCAAQRKQAILHYASRRAMDIE 468

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +D        A  +R+  D++ L         K+  +    + S  NL  ++  
Sbjct: 469 GLGEKLVDQLVD----AGIVRVLPDLYRL------GLLKLAALDRMAEKSAANLLQALQA 518

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIRHVG   A+ LA+++            + A  +     L+ VP V
Sbjct: 519 SKTTTLARFLYALGIRHVGEATAKDLARHF----------GGLDAILDASLEQLLEVPDV 568

Query: 605 GDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           G ++AQ+I  F+  P N   VE L        E +P     +++    +  K LV TG L
Sbjct: 569 GPVVAQSIRTFFDQPHNREVVEQLRACGVHWSEAAP-----DRDAPKPLAGKTLVLTGIL 623

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             + R +A+  +   G  V+  +S+KTD ++ G   GSKL KAQ+LGV +++
Sbjct: 624 PTLSREEAKARIEAAGGKVAGSVSKKTDYVVAGAEAGSKLAKAQELGVTVLD 675


>gi|229194680|ref|ZP_04321473.1| DNA ligase [Bacillus cereus m1293]
 gi|228588783|gb|EEK46808.1| DNA ligase [Bacillus cereus m1293]
          Length = 669

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/712 (36%), Positives = 401/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +EVRGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEVRGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F+++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFEAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|311067136|ref|YP_003972059.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942]
 gi|310867653|gb|ADP31128.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942]
          Length = 668

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/712 (34%), Positives = 404/712 (56%), Gaps = 53/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A++    L   I+ +   YY   +P + DSEYD L +    +    PDL     P+ P
Sbjct: 4   EAAKRRAEDLRSTINQYSYEYYTLDEPSVPDSEYDKLMQELLDLEEEHPDL---RTPDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +  +  KV H  P LSL   +N EDLR F  R+    ++   + + + +E KI
Sbjct: 61  TQRVGGAVIDAFQKVRHGTPMLSLGNAFNAEDLRDFDRRV----RQAVGDDVAYNVELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  N+   IEVRGE Y+ 
Sbjct: 117 DGLAVSLRYENGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLS--IEVRGEAYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+    
Sbjct: 175 KRSFEALNEERLKKEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVDT 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + L  +  +GF  N   ++  T   ++    E+++ R+ LPY+IDG+V KVD    Q+
Sbjct: 235 QSQGLDFLDEIGFKTNQERKKCGTIDEVIDMIEELQAKRADLPYEIDGIVVKVDSLDQQE 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T LLDI++ +GRTG++TP A LEPV + G  +  A+L
Sbjct: 295 ELGFTAKSPRWAIAYKFPAEEVVTTLLDIELNVGRTGVITPTAVLEPVKVAGTTVQRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED I+            +DIR+ D+V++K+AG++IP+VV+++  +R    + F+ P+ 
Sbjct: 355 HNEDLIR-----------EKDIRILDKVVIKKAGDIIPEVVNVLTEQRTGQEKEFNMPTT 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ +  
Sbjct: 404 CPECGSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+ +     +R  AD++ L + +     ++      G+ S  NL  SI K +  SLER 
Sbjct: 457 LFQEK----LVRNVADLYKLTKERVIQLERM------GEKSTDNLISSIQKSKENSLERL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR +G++ A++LA ++ S       ++++   N ++ L+   +  +G+ +A A++
Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFES-------LDHLKKANKEELLA---IDEIGEKMADAVI 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668
            ++Q    +  ++ L +    ++ +  K V  E        K +V TG L+++ R+ A+ 
Sbjct: 557 TYFQKEEMLELLDELEQLGVNTLYKGPKKVKVEDSDSYFAGKTIVLTGKLEELSRNDAKA 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  ++  +S+ TD++I G+  GSKL KA++L +++ NEEQ L  L++
Sbjct: 617 QIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAEELNIEVWNEEQLLGELKK 668


>gi|297570387|ref|YP_003691731.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2]
 gi|296926302|gb|ADH87112.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2]
          Length = 680

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/720 (35%), Positives = 404/720 (56%), Gaps = 51/720 (7%)

Query: 6   LIP--IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           +IP  ++A + EQAR+ ++ L ++I YH+  YY    P I D+EYDAL R    +   +P
Sbjct: 1   MIPPLLQAAAKEQARQRVAELREQIRYHNHRYYVLDDPEIPDAEYDALFRELQELEERYP 60

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
            LA ++ P+    ++G E       V H +P LSLE  +N  ++  F+ R+ RF     D
Sbjct: 61  GLAGADSPS---RQVGAEPLAQFAPVAHRLPMLSLENAFNEGEISDFLLRLGRFLHT--D 115

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--- 180
                  EPK+DG  + + YE G F   + RGDG +GE+++A +  I TIPR L      
Sbjct: 116 QVPALHAEPKLDGLAVELVYEDGLFTLGSTRGDGFTGENITANLATIATIPRRLKTGGNP 175

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  +E+RGEV +S   F  LN      G   +ANPRNAA+G LR+L+P     R L FF
Sbjct: 176 PPARLEIRGEVCLSITGFKELNRRRGEAGESLFANPRNAAAGSLRQLDPAITADRPLEFF 235

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +G   ++ +    Q ++L+++   G  +    R        ++++  +   R  +PY+I
Sbjct: 236 AYGAADSAALAVTTQAQLLEQLHAFGLQLIPHGRVCPDLETALAHFRFLDEQRRQMPYEI 295

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++ +LQK+LG +ARSPRW ++ KFA  QA+T+L+ ++ Q+GRTG +TPVA LE
Sbjct: 296 DGMVLKVNDLALQKRLGAKARSPRWAVAAKFAAVQAATKLIGVEFQVGRTGAVTPVAVLE 355

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG L++ ATLHNED IK            +D+R+ D VLV+RAGEVIP+VV  + +
Sbjct: 356 PVKVGGVLVSRATLHNEDEIK-----------RKDLRLHDTVLVQRAGEVIPEVVKPVAD 404

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D +P   P+ CP C   ++R    K G+  A  RC     C AQ+L  L HF S+ 
Sbjct: 405 KRRGDEKPIQLPANCPECDHALIR----KEGE--AVRRCPNP-QCPAQRLRSLIHFCSKA 457

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
             +I+GLGK+ ++   ++        IP DI+ L+  Q      +  + G+G+ S   + 
Sbjct: 458 GLDIDGLGKKAVELLVQT---GLVGDIP-DIYRLRPEQ------LAPLPGWGEKSAAKVC 507

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           D+I   ++  L R + +LGIRHVG   A+ LA+++ S +   Q +        +D+L   
Sbjct: 508 DAIAAAKSPKLARLLAALGIRHVGEVNAQVLARHFPSLEALQQAM-------EEDFLE-- 558

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL 658
            V  +G  +A ++V F+++P    A+ A LKE+  +I   E+      ++N+  +FTG+L
Sbjct: 559 -VEGIGSQVAASLVTFFKDP-TTTAMLAQLKELGLTISPEEQPAQQLPLQNRVFLFTGSL 616

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R++A+  V +LG  V+  L+RK   ++ GD PGSKL KA++L ++I+ E  F  LL
Sbjct: 617 AGMSRNEAKARVKELGGQVATGLNRKVTHLVCGDKPGSKLTKARELELEILTEADFARLL 676


>gi|261211985|ref|ZP_05926271.1| DNA ligase [Vibrio sp. RC341]
 gi|260838593|gb|EEX65244.1| DNA ligase [Vibrio sp. RC341]
          Length = 670

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 251/709 (35%), Positives = 392/709 (55%), Gaps = 52/709 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L Q +  H   YY    P I D+EYD L R    I    P+      P+ P  ++
Sbjct: 6   QRLTELRQTLHEHGIRYYVEDAPTIPDAEYDRLMRELLDIEAQHPEWI---TPDSPSLRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKIDGT 137
           GG        V H IP LSL+  ++  +L  F  R+  R    +  +   F  EPK+DG 
Sbjct: 63  GGRPLDGFDSVIHEIPMLSLDNAFDDAELESFYRRMTDRIPAVQQSH---FCCEPKLDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ YE G    AA RGDG +GE+++  +R I +IP R+   + P  +EVRGEV++ K 
Sbjct: 120 AVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPRRLEVRGEVFMPKA 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEIFAKG 253
            F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G     + A  
Sbjct: 180 GFDALNARALKKGEKQFVNPRNAAAGSLRQLD-SRITAQRPLAFYAYSVGIIEGGMLASS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+   +++  G P+    +   +   +  +Y ++   R  L Y+IDG+V KVD+ +LQ+
Sbjct: 239 HYQRFLQLKSWGLPICPETKLVASLSEVKDFYQDILQRRGALAYEIDGVVIKVDDITLQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATL
Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+   FP+ 
Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPVDAKTILFPTH 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQS    D+    G+ VA  RCTGGL C AQ+ E LKHFVSR A ++EGLG + ++ 
Sbjct: 408 CPVCQS----DIERIEGEAVA--RCTGGLVCQAQRKEALKHFVSRKALDVEGLGDKVIEQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L+  + T   ++      G  S  N+ D+++K +  +L +F
Sbjct: 462 LVDRE----MVATPADLFRLRAGELTILERM------GPKSAQNVIDALHKAKQTTLPKF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A +LA+++L+ +  AQ               LI V  VG+++A  + 
Sbjct: 512 LYALGIREVGEATALNLAQHFLTLEAIAQATME----------QLIEVSDVGNVVAGHLH 561

Query: 614 EFYQNPRNICAVEAL--LKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            F+   RN   +  L  L    P++         S +  K +V TG+  ++ R+ A+  +
Sbjct: 562 AFFAQSRNQKVIAELIELGVTWPAMAAISSTEADSVLAGKVVVLTGSFNQLSRNDAKAAL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             LGA V+  +S+ TDI+  G+  GSKL KA +LGV +M+E+  + LL+
Sbjct: 622 QALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGVAVMDEQALIELLK 670


>gi|289432483|ref|YP_003462356.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT]
 gi|288946203|gb|ADC73900.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT]
          Length = 680

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/717 (35%), Positives = 390/717 (54%), Gaps = 63/717 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L +EI+ H+  YY    P I D++YD L  R   +  A P+L     P+ P  K+G
Sbjct: 10  EVENLRREINRHNQLYYVQDNPEISDAQYDTLISRLKELEEAHPELV---TPDSPTQKVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPKIDGT 137
            E   +   V H  P LSL   ++  +L  +  R+     KK   +I F +  EPK+DG 
Sbjct: 67  AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRV-----KKLLGNIPFQIDCEPKMDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y  GKF   A RGDG  GE+++  +R I +IP     N P + EVRGEVY+SKN 
Sbjct: 122 AVALTYRDGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNG 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQY 255
           F  LN E    G  P+ANPRNAA+G LR+L+P+    R L+ F++ LG + + +     +
Sbjct: 182 FAKLNRERADKGLPPFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHW 241

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L     +GF +N   R  NT      YY +M + R++LPYD DG+V+KVD  SLQ +L
Sbjct: 242 QILDYFSKIGFRINPLNRLVNTLEEAKEYYRQMAANRASLPYDADGVVFKVDSVSLQHRL 301

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G+  R PRW I++KF  +Q  TRL  I I +GRTG L P A LEPVN+GG ++  A LHN
Sbjct: 302 GDVGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHN 361

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF----- 430
           ED          ++R  +DIR GD V+++RAGEVIP+VV  ++++R+P+++PF       
Sbjct: 362 ED---------DILR--KDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLF 410

Query: 431 -PSF----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+     CP+C   + R      G+  A H C   ++C AQ   +L+HFVSR A +I G
Sbjct: 411 NPNLNRPACPVCGGEIYR----PAGE--AMHYC-ANVSCPAQFERQLEHFVSRGAMDIRG 463

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G + L      +    ++   +D++ L      +T  +  +   G+ S  N+ D+I   
Sbjct: 464 IG-ESLSVILAQQGLVKNV---SDLYYL------TTADLLQLPRMGEKSADNIIDAIADS 513

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L+R IF LG+RHVG E A  L+++Y           NI A        L  +P +G
Sbjct: 514 KTRPLDRVIFGLGVRHVGNETATLLSRHY----------GNIWALAKTGLGELQTIPDIG 563

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQR 663
           D IA +IV ++   +N+  +   L+E    +   +K V+  +     + V TG L+   R
Sbjct: 564 DKIASSIVAYFSEEKNVAVIRR-LEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSR 622

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +AQE +  LG      +++ T  ++VG + GSKL KA+ +GVK ++E +F+ +L+Q
Sbjct: 623 EEAQEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKARSMGVKELSEREFINMLEQ 679


>gi|206890248|ref|YP_002249789.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|254781443|sp|B5YIF8|DNLJ_THEYD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206742186|gb|ACI21243.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 670

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 250/712 (35%), Positives = 403/712 (56%), Gaps = 54/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  +KE+  L +E++YH+  YY    P+I D EYD + RR   +   +  +     P+ P
Sbjct: 6   EDIKKEIEKLVKELNYHNYRYYVLDSPVISDEEYDMMLRRLKELEEKWGYIL----PDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G   +    K  H  P LSL+  ++IE+LR F  R+ R     ++  + +T+EPK 
Sbjct: 62  TQRVGAAPSEKFEKAEHREPMLSLDNAFSIEELRDFDARVKRLLGSSEE--VEYTVEPKY 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN-IPEIIEVRGEVY 192
           DG  + + Y+ G    A+ RGDG+ GED++  I+ I  IP R+  ++ IPE I++RGEVY
Sbjct: 120 DGLAVELSYKDGLLYKASTRGDGYVGEDITQNIKTIKAIPLRIEGVDKIPEEIDIRGEVY 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           ++ ++F  +N E I  G   +ANPRNAASG +R+L+P+   +R L    +G+G    I  
Sbjct: 180 LNIDEFERINKERIEKGEPVFANPRNAASGSVRQLDPSITASRRLYMSCYGIGYVKGIEF 239

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K Q E ++ ++   FPV   V+ A     ++    E++ +R   P++ DG V KV+ F L
Sbjct: 240 KSQIEFIEWLKKGRFPVPAYVKLAKGIEEVIEAIKEIEKLRQGYPFETDGAVVKVNSFEL 299

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG + R PRW I++K+   Q  T+L DI   +GRTG++TPVA LEPV IGG  ++ +
Sbjct: 300 QRKLGTKTREPRWAIAYKYPAHQGITKLKDILASVGRTGVITPVAVLEPVKIGGVTVSRS 359

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D ++            +DIRVGD V+V+RAGEVIP ++ ++ + R  + +    P
Sbjct: 360 TLHNWDEVE-----------RKDIRVGDYVIVERAGEVIPHIIGVVKDRRTGEEKEVKIP 408

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S+ VR+     G++  A +C     C AQ  ER+KHF SR A NIEGLG + +
Sbjct: 409 EHCPVCGSKTVRE----PGEV--AVKCI-NFNCPAQVEERIKHFASRRAMNIEGLGDKTV 461

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           I+   D++ L  RQ+     I+ + GF ++S   L ++I K +  +L 
Sbjct: 462 ELLHNK----GIIKHFVDLYKL--RQED----IKGLPGFAELSSKKLIEAIAKSKKTTLS 511

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +++LGI  VG   ++ LA+++   ++    + +I A        L+++P +G+  A+ 
Sbjct: 512 RLLYALGISQVGEYASKLLAQHFRKLED----LYHIKAEK------LVQIPQIGEKTAKT 561

Query: 612 IVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I +F+ N  N+ A+E L    LK  +P     E+   S ++    V TGTL K  R + +
Sbjct: 562 IEQFFNNEENLKAIEELKRMGLKVENPEF--EEEKKPSPLKGLTFVITGTLPK-PREEVK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E + + G  VS+ +S+ TD ++VG++PGSKL KAQ L VK ++ E+FL +L+
Sbjct: 619 EMIEKAGGKVSSSVSKNTDYLLVGEDPGSKLAKAQALRVKTLSYEEFLKMLE 670


>gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase [Herbaspirillum seropedicae SmR1]
 gi|300074267|gb|ADJ63666.1| NAD-dependent DNA ligase (contains BRCT domain type II) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 688

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 251/701 (35%), Positives = 393/701 (56%), Gaps = 59/701 (8%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L  +++ H+  YY   +P I D+EYD L +   A+  A P+L     P+ P  ++G   
Sbjct: 24  ALRADLNRHNYSYYVLDQPSIPDAEYDRLFQELQALETAHPELL---TPDSPTQRVGAGP 80

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                 V H IP LSL   ++ +D+  F  R+    +   +  + +  E K DG  I++R
Sbjct: 81  LPQFEPVRHDIPMLSLGNGFSDDDIEAFDKRVRDGLETLQE--VRYATELKFDGLAISLR 138

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLAL 201
           YE G  V AA RGDG +GE+V+A IR +  IP R+    IP++++VRGEV + K+DF  L
Sbjct: 139 YENGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGEAIPQLLDVRGEVLMYKDDFARL 198

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEML 258
           N      G+K +ANPRNAA+G LR+L+ + IT  R L FF +G+G             +L
Sbjct: 199 NQRQRDAGQKEFANPRNAAAGSLRQLD-SRITAQRTLRFFAYGIGVLEGADMPSSHSALL 257

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
              + LG PV           G++ ++  + + R +LPY+IDG+VYKVD    QKQLG  
Sbjct: 258 DWYQQLGLPVCKERAVVTGATGLLEFFRGIGAKRESLPYEIDGVVYKVDRLDQQKQLGFV 317

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           +R+PR+ ++HKF  ++A T + DI++Q+GRTG +TPVARL PV +GG  +TNATLHNED 
Sbjct: 318 SRAPRFALAHKFPAQEALTVVQDIEVQVGRTGAITPVARLNPVFVGGVTVTNATLHNEDE 377

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++            +DI++GD V+V+RAG+VIP+VV  +  +R  DA+ F  P+ CP+C 
Sbjct: 378 VR-----------RKDIQIGDTVIVRRAGDVIPEVVAYVPEKRPADARAFVMPAACPVCG 426

Query: 439 SRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           S +VR  +       A  RC+GG L CSAQ+   L+HF SR A +IEGLG+Q ++     
Sbjct: 427 SPIVRAEDE------AVARCSGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLVDR 480

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           +     +  PAD++ L        + +  +    + S  N+ D++ K ++ +L RFI++L
Sbjct: 481 K----VVNTPADLYRL------GLSALAELDRMAEKSAQNVLDALQKSKSTTLARFIYAL 530

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG   A+ LA+++         ++ I+A +      L+ V  VG ++A +I  F+ 
Sbjct: 531 GIRHVGEATAKELARHFGG-------LDKILAASE---AQLLEVADVGPVVATSIRSFFD 580

Query: 618 NPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +  N+  VE L      ++G H       +  +  +  K  V TGTL  + R +A + + 
Sbjct: 581 DALNVELVEQLR-----AVGVHWPESAGVEAAAKHLAGKTFVLTGTLPNLSRDEASQLIE 635

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
             G  V+  +S+KT  ++ G   GSKL KA++LG+ I++E+
Sbjct: 636 AAGGKVTGSVSKKTTYVVAGAEAGSKLAKAEELGIAILDED 676


>gi|301052018|ref|YP_003790229.1| DNA ligase [Bacillus anthracis CI]
 gi|300374187|gb|ADK03091.1| DNA ligase [Bacillus cereus biovar anthracis str. CI]
          Length = 669

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 400/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPVCESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|229009789|ref|ZP_04167009.1| DNA ligase [Bacillus mycoides DSM 2048]
 gi|228751407|gb|EEM01213.1| DNA ligase [Bacillus mycoides DSM 2048]
          Length = 669

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++Q+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 AIQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLELER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKTINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGMKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKNIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|310768269|gb|ADP13219.1| NAD-dependent DNA ligase LigA [Erwinia sp. Ejp617]
          Length = 670

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 249/716 (34%), Positives = 417/716 (58%), Gaps = 55/716 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +    P+L  S+ P  
Sbjct: 1   MESVQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAQHPELLTSDSPTQ 60

Query: 74  PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            +    G   LS+F +V H +P LSL+  ++ E    F  R+    +  DD  I F  E 
Sbjct: 61  RV----GAAPLSVFEQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCEL 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  +++ YEKG+ V AA RGDG +GE+++A +R I  IP R+   NIPE +EVRGEV
Sbjct: 115 KLDGLAVSLLYEKGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSE 248
           ++    F  +N++  + G+K +ANPRNAA+G LR+L+P     R L FF +GLG  +  E
Sbjct: 175 FMPLVGFEQMNEQARSSGQKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  +     LQ+ +  G PV++ VR  ++   ++ +Y+++++ R TL +DIDG+V KVD 
Sbjct: 235 M-PRSHRARLQRFKAWGLPVSDRVRLCHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDS 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G ++
Sbjct: 294 LALQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVLVAGVMV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            +++GDRV+++RAG+VIP+V+ ++  E   +A+  
Sbjct: 354 SNATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVV--ETGDNAREI 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           +FP+ CP+C S V R      G++VA  RCTGGL C AQ+   LKHFVSR A +I+G+G+
Sbjct: 401 AFPTRCPVCGSDVER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D     E     ++ PA++F L      +  K+  +   G  S  N+ +++ K +  
Sbjct: 455 KIIDQLVDKE----YVKNPAELFEL------TAGKLTGLDRMGPKSAQNVVNALVKAKQT 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGI  VG   A +LA ++ +       ++ ++A + D   +L+ V  VG ++
Sbjct: 505 TFARFLYALGISEVGEATAANLAAHFGT-------LDALMAADLD---ALMAVQDVGKVV 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRH 664
           A  +  F     N   +  L+ +   +  +      + + S    K +V TG+L  + R 
Sbjct: 555 ASHVRNFLDEESNREIIRLLVDKAGVNWPQVMVVKAEEIDSPFAGKTVVLTGSLSILSRD 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A++ +  LGA VS  +S+KTD++I G+  GSKL KA++LG+ +++E++ + LL +
Sbjct: 615 EAKDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKARELGIDVIDEQEMIRLLGE 670


>gi|77360026|ref|YP_339601.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
 gi|123730523|sp|Q3IKB8|DNLJ_PSEHT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76874937|emb|CAI86158.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
          Length = 673

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/718 (35%), Positives = 398/718 (55%), Gaps = 62/718 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQ     S+LEQ    H   YY    P I D+EYD L ++  A+    P+L  ++ P   
Sbjct: 7   EQINHLRSTLEQ----HSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITADSPT-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+GG       +V H +P LSL+  ++ ++   F  RI       ++  + F  EPK+
Sbjct: 61  -QKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTEE--LTFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  ++I Y  G  V AA RGDG +GE+V+  ++ I  +P ++   + P  +EVRGEV++
Sbjct: 118 DGLAVSIIYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE-IF 250
               F   N E    G K + NPRNAA+G LR+L+ + IT  R L F+ +  G  ++   
Sbjct: 178 DNAGFEKFNIEAEKRGEKVFVNPRNAAAGSLRQLD-SKITAKRPLMFYAYSTGLVADGSI 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+  Y+ L+K+   G P+    +        ++YY ++ + R  L Y+IDG+V K+++ +
Sbjct: 237 AEDHYQQLEKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQKA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++N
Sbjct: 297 LQERLGFVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            ++VGD V+++RAG+VIP++  +++  R  DA+   F
Sbjct: 357 ATLHNGDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CPIC S V +      G+ VA  RCTGGL C AQ+ + +KHF SR A +I+GLG + 
Sbjct: 406 PVTCPICDSHVEK----VEGEAVA--RCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKI 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     I+ PAD+F L++         E++   G  S  NL  ++   +  +L
Sbjct: 460 VDQLVDRE----LIKTPADLFILKQGH------FESLERMGPKSAKNLVTALQDAKATTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F++SLGIR  G    ++LA ++L+ +N    IN  I        SL +V  VG+I+A 
Sbjct: 510 AKFLYSLGIREAGEATTQNLANHFLTLENV---INASID-------SLTQVSDVGEIVAT 559

Query: 611 AIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            +  F+    N+  V AL++      E++P   + +      +     V TGTL  + R+
Sbjct: 560 HVRSFFAEQHNLDVVNALVEQGINWPELTPPSAQEQP-----LAGLVYVLTGTLNTLNRN 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            A+  + QLGA VS  +S KTD ++ G+  GSKL KAQ LG+ ++ EE  + LL+Q+N
Sbjct: 615 DAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEEDLINLLEQHN 672


>gi|323140467|ref|ZP_08075395.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067]
 gi|322415035|gb|EFY05826.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067]
          Length = 679

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/709 (36%), Positives = 387/709 (54%), Gaps = 57/709 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E   L +EI +++  YY    P I D+EYD +  R   +   +PD   S   + P  ++G
Sbjct: 17  EADKLRREIRHNEYLYYVLDAPEITDAEYDRMMVRLRELEARYPD---SIPADSPTQRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G  +    +V H  P LSL  +++ E+LR F  R+         + + + +EPKIDG   
Sbjct: 74  GRASSQFTEVRHLEPLLSLGNVFSAEELRAFDERVRSGLPAG--SKVEYVMEPKIDGLAC 131

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVYISK 195
           ++ YE GK V AA RGDG  GE+V+A +R I +IP  L +     +PE+++VRGEVY+ +
Sbjct: 132 SLIYENGKLVRAATRGDGVVGENVTANVRTIRSIPLTLKVPDGETVPELLDVRGEVYMPR 191

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
             F+ LN++    G   +ANPRNAA+G LR+L+P    +R L+FF + L    E      
Sbjct: 192 QAFMRLNEQRAERGESEFANPRNAAAGSLRQLDPQVTASRSLSFFAYYL--VGEGAQPKH 249

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +   GF V+   +        + Y  +   +R  L YD DG V KV++   Q+ 
Sbjct: 250 SESLALLAHYGFKVSENYKVVENIDEAIKYIGDFNELRQGLSYDTDGAVIKVNDVYQQRI 309

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   + PRW  ++K+  +QA T L DID ++GRTG+LTP A L PV + G++I+ ATLH
Sbjct: 310 LGATGKDPRWATAYKYPPEQAETTLEDIDWRVGRTGVLTPTAVLTPVKLSGSVISRATLH 369

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED+I+            +DIR+GDRV++ +AGE+IP+V+ ++V +R  D +  + PS C
Sbjct: 370 NEDFIR-----------AKDIRIGDRVVINKAGEIIPEVLRVVVEKRTGDEKEVAIPSVC 418

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C  RV R          AA RCT    C A   E L HFVSRDA NI+G G   ++  
Sbjct: 419 PECGWRVERQGEE------AAIRCTNP-HCPALGREGLIHFVSRDAMNIDGCGPSVINAL 471

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                 A  +R  AD+++L++       K+E +   G+ S  NL  ++ + +   L++ +
Sbjct: 472 LD----AGLVRDAADLYSLRK---DDLLKLERM---GEKSADNLLAALAESKKNELDKLL 521

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIRHVGA++AR LA  + S +   Q     +A   D          +GD IA+++V 
Sbjct: 522 FALGIRHVGAKVARILATEFGSMEKLQQAQPEELAQIRD----------IGDKIAESVVT 571

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQKIQRHKAQEYV 670
           +   P NI  VE L    +  +       +S+ +N    K LVFTGT+  + R +A+   
Sbjct: 572 WLNVPANIDLVERL---AAAGLTMTFTPTASQEDNPFFGKTLVFTGTMPTLGRAEAKTMA 628

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +GA VS  +S+KTD +I G   GSKLEKAQQLGV +++E +FL LL+
Sbjct: 629 QDVGAKVSGSVSKKTDYVIAGAEAGSKLEKAQQLGVTVIDEAEFLRLLK 677


>gi|296046583|gb|ADG86433.1| NAD-dependent DNA ligase [Francisella novicida]
          Length = 673

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/718 (35%), Positives = 398/718 (55%), Gaps = 62/718 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQ     S+LEQ    H   YY    P I D+EYD L ++  A+    P+L  ++ P   
Sbjct: 7   EQINHLRSTLEQ----HSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITADSPT-- 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+GG       +V H +P LSL+  ++ ++   F  RI       ++  + F  EPK+
Sbjct: 61  -QKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTEE--LTFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  ++I Y  G  V AA RGDG +GE+V+  ++ I  +P ++   + P  +EVRGEV++
Sbjct: 118 DGLAVSIIYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE-IF 250
               F   N E    G K + NPRNAA+G LR+L+ + IT  R L F+ +  G  ++   
Sbjct: 178 DNAGFEKFNIEAEKRGEKVFVNPRNAAAGSLRQLD-SKITAKRPLMFYAYSTGLVADGSI 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+  Y+ L+K+   G P+    +        ++YY ++ + R  L Y+IDG+V K+++ +
Sbjct: 237 AEDHYQQLEKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQKA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++N
Sbjct: 297 LQERLGFVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            ++VGD V+++RAG+VIP++  +++  R  DA+   F
Sbjct: 357 ATLHNGDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CPIC S V +      G+ VA  RCTGGL C AQ+ + +KHF SR A +I+GLG + 
Sbjct: 406 PVTCPICDSHVEK----VEGEAVA--RCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKI 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     I+ PAD+F L++         E++   G  S  NL  ++   +  +L
Sbjct: 460 VDQLVDRE----LIKTPADLFILKQGH------FESLERMGPKSAKNLVTALQDAKATTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F++SLGIR  G    ++LA ++L+ +N    IN  I        SL +V  VG+I+A 
Sbjct: 510 AKFLYSLGIREAGEATTQNLANHFLTLENV---INASID-------SLTQVSDVGEIVAT 559

Query: 611 AIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            +  F+    N+  V AL++      E++P   + +      +     V TGTL  + R+
Sbjct: 560 HVRSFFAEQHNLDVVNALVEQGINWPELTPPSAQEQP-----LAGLVYVLTGTLNTLNRN 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            A+  + QLGA VS  +S KTD ++ G+  GSKL KAQ LG+ ++ EE  + LL+Q+N
Sbjct: 615 DAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEEDLINLLEQHN 672


>gi|254448715|ref|ZP_05062173.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
 gi|198261723|gb|EDY86010.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
          Length = 673

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/707 (35%), Positives = 386/707 (54%), Gaps = 48/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + SL +++  H   YY   +P I D+EYD L R   ++   +P+   S   + P  +
Sbjct: 8   QQHIDSLREQLHQHAHAYYVLDEPSIPDAEYDRLFRELQSLEAQYPE---SHSDDSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +   V H +P LSL  +++ ++L  F  R+         + + +  EPK+DG 
Sbjct: 65  VGAAPLDAFVSVEHEVPMLSLGNVFSDDELVAFDQRLRERLDYP--SELEYAAEPKLDGL 122

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVYISK 195
            I++ YE G  V  A RGDG  GEDV+  I+ I +IP  L    + P+ +EVRGEVY+ K
Sbjct: 123 AISLLYEDGVLVRGATRGDGSVGEDVTQNIKTIHSIPLRLPKRGDWPKRLEVRGEVYMPK 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
             F A+N +    G K +ANPRNAA+G LR+L+     +R L+ + + +G          
Sbjct: 183 AGFEAMNAKAREQGDKVFANPRNAAAGSLRQLDSRIAASRPLDMYCYSVGVFEGELPATH 242

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +   GF +           G   YY ++   R TLPY+IDG+VYKV+   LQ  
Sbjct: 243 SETLAMLGRWGFRICPESAVVTGASGCAEYYQQIGRARDTLPYEIDGVVYKVNSLKLQGD 302

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW  +HKF   +  T L D++ Q+GRTG LTPVARLEPVN+ G +++NATLH
Sbjct: 303 LGFVARAPRWATAHKFPPSEELTVLQDVEFQVGRTGALTPVARLEPVNVAGVVVSNATLH 362

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +K            +D+R+GD V+V+RAG+VIP+VV  ++  R  +A     PS C
Sbjct: 363 NMDEVK-----------RKDVRIGDTVIVRRAGDVIPEVVKSVLERRPKEAPAIVMPSHC 411

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V+R      G+ VA  RC+GGL CSAQ+ E +KHF SR A +I+G+G + +D  
Sbjct: 412 PVCGSDVIR----PEGEAVA--RCSGGLYCSAQRREAIKHFASRKALDIDGVGDKLIDQL 465

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     I    D+F L   Q  S  ++      G+ S T   +++   +  +L +F+
Sbjct: 466 VDGE----LIDHVDDLFHLTVEQLASLERM------GEKSATKAIEALENAKRTTLPKFL 515

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   AR+LA ++        ++  I+  + DD   L+ V  VG I+A  +  
Sbjct: 516 FALGIREVGEVTARNLAMHF-------GDLEPIMQASEDD---LLAVADVGPIVAAHVKS 565

Query: 615 FYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F++ P NI  ++ LL+   V   I   E+   + ++    V TGT   ++R +A++ +  
Sbjct: 566 FFEQPHNIEVIDKLLEAGFVWEPIEVAEQK-EAVLDGHTYVLTGTFTAMKRDEAKQQLLA 624

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LGA VS  +S+KT  +  GD+PGSK++KA +L V +  EE  L LL+
Sbjct: 625 LGAKVSGSVSKKTTAVFAGDSPGSKVDKAAELEVPVKTEEDLLELLK 671


>gi|227892258|ref|ZP_04010063.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741]
 gi|227865899|gb|EEJ73320.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741]
          Length = 672

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 253/714 (35%), Positives = 402/714 (56%), Gaps = 65/714 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  +++   + YY    P + DS YD   +R   +  A PDL  ++ P+    ++G
Sbjct: 9   ELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSPS---QRVG 65

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G++     KV H IP LSL  +++ E+L +F+ R+    ++K D    ++ E KIDG  I
Sbjct: 66  GKVLSGFTKVNHDIPMLSLGDVFSKEELIEFLERLENSVEQKLD----YSCELKIDGLAI 121

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ YE GKF+  + RG+G  GED++  ++ I  IP  + LN P  IEVRGE Y+ K  F+
Sbjct: 122 SLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIP--MELNEPVSIEVRGECYMPKKSFV 179

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM 257
            LN +  A G+  +ANPRNAA+G LR+L+ T IT  R L+ F++ L +  ++  K Q E 
Sbjct: 180 ELNTKREAEGQAVFANPRNAAAGSLRQLD-TKITASRNLSTFIYYLMEPEKLGIKTQTEA 238

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+   GF VNN  +Q  T   I +Y +E    R+ LPYDIDG+V KV+ F++Q Q+G 
Sbjct: 239 LNKLESWGFKVNNESKQVKTKEEIFAYIDEATDQRANLPYDIDGIVLKVESFAVQSQVGN 298

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRW I++KF   +  T++LDI+  +GRTG++TP A +EPV + G  +  A+LHN D
Sbjct: 299 TVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVARASLHNPD 358

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           Y++            +DIR+GD V + +AG++IP++ ++++ +R  D+  +  P+ CP C
Sbjct: 359 YLR-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRTEDSVEYQIPTECPEC 407

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            + +V  L+ +      A RC     C A   E L HF SR+A +I GLG + ++  +  
Sbjct: 408 GANLVH-LDDE-----VALRCINP-QCPALVKESLTHFASRNAMDIRGLGPRIIEQLYNR 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     I+  A I++L   Q  +  K      F + S  NL  +IN  RN S+ER IF L
Sbjct: 461 E----MIKDVAGIYSLTFEQLITLDK------FKEKSANNLLTAINNSRNNSIERLIFGL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA++AR LA+ Y S  N A+  ++ I+           +  +G II  ++  ++ 
Sbjct: 511 GIRHVGAKVARILAENYKSMDNLAKAKSDEIS----------TIDSLGKIIGDSVEMYFA 560

Query: 618 NPRNICAVEALLKEVSPS------IGRH-----EKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +      V  LL E+  +      +G+      E +  S     ++V TGTL  ++R +A
Sbjct: 561 DEH----VMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKRSEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + ++   GA V+  +S+KTD++I G + GSKL KAQ+L V++MNE +F+  +++
Sbjct: 617 KSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEE 670


>gi|300118925|ref|ZP_07056636.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1]
 gi|298723541|gb|EFI64272.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1]
          Length = 669

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|228983547|ref|ZP_04143752.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228776143|gb|EEM24504.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 669

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 397/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKEINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|326796428|ref|YP_004314248.1| DNA ligase [Marinomonas mediterranea MMB-1]
 gi|326547192|gb|ADZ92412.1| DNA ligase [Marinomonas mediterranea MMB-1]
          Length = 680

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/702 (36%), Positives = 387/702 (55%), Gaps = 50/702 (7%)

Query: 28  ISYHDDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
           +S  +D  Y Y     P + DSEYD L +    I    P   +   P+ P  ++G + + 
Sbjct: 16  VSQLNDYSYSYHVKDDPKVPDSEYDRLYKALQLIELKNPQWIQ---PDSPTQRVGEKPDT 72

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
               V H++  LSL+  ++ + + +F  R+ +   +  D  I F  EPK+DG  I++RYE
Sbjct: 73  GFANVEHTVAMLSLDNAFDDDSMLEFNERVKKLLNESAD--IEFCCEPKLDGLAISLRYE 130

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVYISKNDFLALND 203
            G  V    RGDG SGED+++ IR I T+P  L  + P  ++EVRGE+Y+ K  F  LN 
Sbjct: 131 DGVLVRGVTRGDGLSGEDITSNIRTIHTVPLKLRTDTPPPVVEVRGEIYMPKEGFEVLNA 190

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ--YEMLQK 260
                  K + NPRNAA+G LR+L+P    +R L    + +G  SE + + Q  Y+ L +
Sbjct: 191 LAKQKDEKLFVNPRNAAAGSLRQLDPKITASRPLVLCAYSIG-FSEGWTQPQSHYDGLIQ 249

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +   GF +N+ + +     G +SYY ++   R  L YDIDG+VYKVD  + Q++LG  AR
Sbjct: 250 LGDWGFKINDRMERVTGIQGCLSYYEKLNQDRPALTYDIDGIVYKVDSIAKQQELGFIAR 309

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I+ KF  ++  T++  ID Q+GRTG +TPVARLEPV +GG  ++NATLHN+D I 
Sbjct: 310 APRWAIARKFPAQEEITQIKGIDFQVGRTGAITPVARLEPVFVGGVTVSNATLHNKDEIA 369

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            L            +RV D V+++RAG+VIP+VV +++ +R        +P  CP+C S 
Sbjct: 370 RL-----------GVRVNDWVIIRRAGDVIPQVVQVVLEKRPEGTVSVEYPDSCPVCGSH 418

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
             +      G+ V   RC GGL C+AQ  E LKHFVSR A +I+GLG + ++    ++  
Sbjct: 419 TEQ----VEGEAVI--RCAGGLVCNAQLKESLKHFVSRKAMDIDGLGDKLIEQLVDNK-- 470

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              ++ PADI+ L  ++     ++ ++   GD SV  L  SI+  +N    RFI++LGIR
Sbjct: 471 --LVQTPADIYKLHEKE----ARLLDLERMGDKSVDKLLTSIDASKNTLFNRFIYALGIR 524

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
            VG   A++L K+Y +     Q           D  SLI+V  VG I+AQ +  F++  +
Sbjct: 525 EVGEATAKALTKHYKALDALIQA----------DQESLIQVSDVGPIVAQHVQRFFEQEQ 574

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           NI  +  L++         E    SE  +  K  V TGTL +  R + +E + QLGA VS
Sbjct: 575 NIVVINELIELGIQWDAPAEAAGESEQPLLGKTYVVTGTLNEFTREEIKEKLQQLGAKVS 634

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +S KTD ++ G+  GSKL KAQ L V +++E+  +  L++
Sbjct: 635 GSVSGKTDCLVAGEKAGSKLAKAQSLNVPVLDEQGIIAFLKE 676


>gi|228989472|ref|ZP_04149457.1| DNA ligase [Bacillus pseudomycoides DSM 12442]
 gi|228770197|gb|EEM18776.1| DNA ligase [Bacillus pseudomycoides DSM 12442]
          Length = 669

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E+A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+    + P
Sbjct: 1   MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIEDSP 60

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
                ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD+++ +  
Sbjct: 61  T---VRVGGAV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+FV  A RGDG +GED++  ++ I  IP  L L     +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIP--LRLKEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G LR+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ  LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +VR L  +      A RC    AC AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACDSELVR-LEEEV-----ALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F+++     IR  AD++ L + Q     +      FG+ S + L  +I   +  S
Sbjct: 454 VITQLFEAD----YIRTFADLYPLTQEQLLQLER------FGEKSASKLVQAIETSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+LA+++ +  +  +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATEEELKEINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVS-----PSIGRHE-KNVSSEIENKKLVFTGTLQKIQR 663
           Q+IV ++ N  ++  +    KE         I R + +N++S    K +V TG L+ + R
Sbjct: 554 QSIVTYFDN-EDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ + +LG  V+  +S+ TD+++ G+  GSKL +A++  +++ NEE+FL
Sbjct: 613 SEAKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFL 664


>gi|163938297|ref|YP_001643181.1| NAD-dependent DNA ligase LigA [Bacillus weihenstephanensis KBAB4]
 gi|229165272|ref|ZP_04293059.1| DNA ligase [Bacillus cereus AH621]
 gi|254781256|sp|A9VRG3|DNLJ_BACWK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163860494|gb|ABY41553.1| DNA ligase, NAD-dependent [Bacillus weihenstephanensis KBAB4]
 gi|228618097|gb|EEK75135.1| DNA ligase [Bacillus cereus AH621]
          Length = 669

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++Q+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 AIQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLELER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKTINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|295702476|ref|YP_003595551.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319]
 gi|294800135|gb|ADF37201.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319]
          Length = 668

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 250/720 (34%), Positives = 401/720 (55%), Gaps = 63/720 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+  +  L   ++ +   YY   +P + D+EYD L      I  +FP+L  +   
Sbjct: 1   MEFETAKSRVQELRDLLNQYGYEYYVLDQPSVPDAEYDKLMNELIEIEDSFPELKTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG++  +  KV H    LSL   +N EDLR F  R+    ++  ++   +  E
Sbjct: 58  DSPTQRIGGQVLDAFEKVQHQTSMLSLGNAFNEEDLRDFDRRV----RQAVEDEFSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G  V  A RGDG +GE+++  ++ I +IP  L +  P  +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYLVLGATRGDGTTGENITENLKTIRSIP--LRIKEPLSMEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ +  F ALN+  +     P+ANPRNAA+G LR+L+P     R L+ FV+ +  T E+ 
Sbjct: 172 FMPRKSFKALNEAKMERDEVPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYAMTDTGELE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   +   T   +++Y    ++ R  L YDIDG+V KVD F 
Sbjct: 232 IDSHSESLNLLDELGFKTNKERQTCETIDDVIAYIESWQTQRPELSYDIDGIVVKVDSFD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I++KF  ++  T+L++I++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQAELGTTAKSPRWAIAYKFPAEEVVTKLVNIELTVGRTGVITPTAILEPVQVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I  +R  + Q F+ 
Sbjct: 352 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIEEKRTGEEQEFTM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR L  +      A RC    +C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECESELVR-LEEEV-----ALRCINP-SCPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     I+  ADI+TL ++Q     ++      G+ S  NL  +I   +  SL
Sbjct: 454 ISQLFREQ----LIKDVADIYTLTKQQLIELERM------GEKSADNLIAAIEASKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A++LA+++       + I+ +     D+   L+ +  +G  +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKTLAQHF-------ETIDKLTKATYDE---LVAINEIGAKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEV----------SPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           AIV ++        V+ L+ E+           P +   E NV S    K +V TG L++
Sbjct: 554 AIVAYFTQEE----VQELIHELKEYGVNLTYKGPKLVSVE-NVDSVFAGKTVVLTGKLEQ 608

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R++A+  +  LG  V+  +S+KTD+++ G+  GSKL KA +L +++ +E + L  L +
Sbjct: 609 LSRNEAKAQIEALGGKVTGSVSKKTDLVVAGEEAGSKLTKANELEIEVWDEARLLTELNK 668


>gi|229154059|ref|ZP_04282184.1| DNA ligase [Bacillus cereus ATCC 4342]
 gi|228629339|gb|EEK86041.1| DNA ligase [Bacillus cereus ATCC 4342]
          Length = 669

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 397/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQQSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKEINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKNIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|73748436|ref|YP_307675.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1]
 gi|123759761|sp|Q3ZX08|DNLJ_DEHSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|73660152|emb|CAI82759.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1]
          Length = 677

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/717 (35%), Positives = 391/717 (54%), Gaps = 63/717 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L +EI+ H+  YY    P I D++YD L RR   +  A P+L     P+ P  K+G
Sbjct: 7   EVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELV---TPDSPTQKVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPKIDGT 137
            E   +   V H  P LSL   ++  +L  +  R+     KK   +I F +  EPK+DG 
Sbjct: 64  AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRV-----KKLLGNISFQIDCEPKMDGL 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y  GKF   A RGDG  GE+++  +R I +IP     N P + EVRGEVY+SKN 
Sbjct: 119 AVALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNG 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQY 255
           F  LN E    G   +ANPRNAA+G LR+L+P+    R L+ F++ LG + + +     +
Sbjct: 179 FAKLNRERADKGLPLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHW 238

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L     +GF +N   R  NT      YY +M + R++LPY+ DG+V+KVD  SLQ +L
Sbjct: 239 QILDYFSKIGFRINPLNRLVNTMEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHRL 298

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G+  R PRW I++KF  +Q  TRL  I I +GRTG L P A LEPVN+GG ++  A LHN
Sbjct: 299 GDVGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHN 358

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF----- 430
           ED          ++R  +DIR GD V+++RAGEVIP+VV  ++++R+P+++PF       
Sbjct: 359 ED---------DILR--KDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLF 407

Query: 431 -PSF----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+     CP+C   + R      G+  A H CT  ++C AQ   +L+HFVSR A +I G
Sbjct: 408 NPNLNRPACPVCGGEIYR----PAGE--AMHYCT-NVSCPAQFERQLEHFVSRGAMDIRG 460

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G + L      +    ++   +D++ L      +T  +  +   G+ S  N+ D+I   
Sbjct: 461 IG-ESLSVILAQQGLVKNV---SDLYYL------TTADLLQLPRMGEKSADNIIDAIADS 510

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L+R IF LG+RHVG E A  L+++Y           NI A        L  +P +G
Sbjct: 511 KTRPLDRVIFGLGVRHVGNETATLLSRHY----------GNIWALAKTGLGELQTIPDIG 560

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQR 663
           D IA +IV ++   +N+  +   L+E    +   +K V+  +     + V TG L+   R
Sbjct: 561 DKIASSIVAYFSEEKNVAVIRR-LEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSR 619

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +AQE +  LG      +++ T  ++VG + GSKL KA+ +GVK ++E +F+ +L+Q
Sbjct: 620 EEAQEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKARSMGVKELSEREFINMLEQ 676


>gi|299783520|gb|ADJ41518.1| DNA ligase, NAD-dependent [Lactobacillus fermentum CECT 5716]
          Length = 679

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/727 (34%), Positives = 407/727 (55%), Gaps = 67/727 (9%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+ +QA+ EL+ L +++      YY+   P + D  YD   +R   I   FPDL   
Sbjct: 7   VSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQRFPDLVV- 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--- 125
             P+ P  ++GG     L KVTH IP LS+  ++++ +L  F  R       + DNS   
Sbjct: 66  --PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSLAELADFNRR-------QQDNSDVK 116

Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  +++ YE G+ V  + RG+G  GEDV+  ++ I +IP+VL    P 
Sbjct: 117 VDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPE--PL 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242
            +E RGE Y+ K  F+ LN+   A G+  +ANPRNAA+G LR+L+P     R L+ F++ 
Sbjct: 175 SLEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTFMYY 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +     +    Q + L+KMR LGF VN   R  ++   + +Y  E    R  LPY IDG+
Sbjct: 235 VPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGIDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV++ + Q  LG   + PRW I++KF  ++ +T + DI+  +GRTG +TP A ++PV 
Sbjct: 295 VEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A+LHN DY+             +DIR+GD VL+ +AG++IP++  +I+ +R 
Sbjct: 355 LAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIEKRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D++P+  P+ CP C + +V  L+ +      A RC   + C AQ  E L HF SR+A N
Sbjct: 404 ADSKPYEVPTTCPECGADLVH-LDDEV-----ALRCVNPM-CPAQIKEGLAHFASRNAMN 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG + ++  +        ++  AD++ L+  Q  +  K      FG+ S++NL  +I
Sbjct: 457 IDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLTLPK------FGEKSISNLLTAI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              R+ S ER +F LGIRHVGA++A+ LA  + S       ++ ++A    D  ++  V 
Sbjct: 507 ANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKS-------VDALMAA---DAATISAVD 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFT 655
            +G II  A+  ++QN   +  + A LKEV       +P+    E   S+E   K++V T
Sbjct: 557 SIGPIIGDAVATYFQN-EQVHQLIAELKEVGVNMDYLAPTTSATE---SAEWAGKRVVLT 612

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G L K+ R +AQE+++  GA V+  +S+KTD++I G+  GSKLEKAQ LG+++ +E++F 
Sbjct: 613 GKLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFD 672

Query: 716 FLLQQYN 722
             +++ N
Sbjct: 673 QAMKEEN 679


>gi|228931797|ref|ZP_04094693.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228827777|gb|EEM73515.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 669

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|301299742|ref|ZP_07205992.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852673|gb|EFK80307.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 672

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 251/711 (35%), Positives = 403/711 (56%), Gaps = 59/711 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  +++   + YY    P + DS YD   +R   +  A PDL  ++ P+    ++G
Sbjct: 9   ELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSPS---QRVG 65

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G++     KV+H IP LSL  +++ E+L +F+ R+    ++K D    ++ E KIDG  I
Sbjct: 66  GKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLERLENSVEQKLD----YSCELKIDGLAI 121

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ YE GKF+  + RG+G  GED++  ++ I  IP  + LN P  IEVRGE Y+ K  F+
Sbjct: 122 SLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIP--MELNEPVSIEVRGECYMPKKSFV 179

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM 257
            LN +  A G+  +ANPRNAA+G LR+L+ T IT  R L+ F++ L +  ++  K Q E 
Sbjct: 180 ELNTKREAEGQAVFANPRNAAAGSLRQLD-TKITASRNLSTFIYYLMEPEKLGIKTQTEA 238

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+   GF VNN  +Q  T   I +Y +E    R+ LPYDIDG+V K + F++Q Q+G 
Sbjct: 239 LDKLESWGFKVNNESKQVKTKEEIFAYIDEATDQRANLPYDIDGIVLKAESFAVQSQVGN 298

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRW I++KF   +  T++LDI+  +GRTG++TP A +EPV + G  +  A+LHN D
Sbjct: 299 TVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVARASLHNPD 358

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           Y+K            +DIR+GD V + +AG++IP++ ++++ +R  D+  +  P+ CP C
Sbjct: 359 YLK-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRPEDSVEYQIPTECPEC 407

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            +++V  L+ +      A RC     C A   E L HF SR+A +I GLG + ++  +  
Sbjct: 408 GAKLVH-LDDE-----VALRCINP-QCPALVKESLTHFTSRNAMDIRGLGPRIIEQLYNR 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     I+  A I++L   Q  +  K      F + S  NL  +I+  RN S+ER IF L
Sbjct: 461 E----MIKDVAGIYSLTFEQLITLDK------FKEKSANNLLTAIDNSRNNSIERLIFGL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA++AR LA+ Y S  N A+  ++ I+           +  +G+II  + VE Y 
Sbjct: 511 GIRHVGAKVARILAENYKSMDNLAKAKSDEIS----------TIDSLGEIIGDS-VEMYF 559

Query: 618 NPRNICAVEALLKEVSPSI--------GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
              ++  +   L++   ++         + E +  S     ++V TGTL  ++R +A+ +
Sbjct: 560 ADEHVMELLDELRQAGVNMEFLGQTREEQLESSTDSSFNGLRVVLTGTLDTLKRSEAKSW 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   GA V+  +S+KTD++I G + GSKL KAQ+L V++MNE +F+  +++
Sbjct: 620 LEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEE 670


>gi|319762938|ref|YP_004126875.1| DNA ligase, nad-dependent [Alicycliphilus denitrificans BC]
 gi|330825018|ref|YP_004388321.1| DNA ligase [Alicycliphilus denitrificans K601]
 gi|317117499|gb|ADU99987.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans BC]
 gi|329310390|gb|AEB84805.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans K601]
          Length = 717

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 261/743 (35%), Positives = 396/743 (53%), Gaps = 82/743 (11%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A  +E  R +L+    E       YY   +P + D+EYD + ++  A+  A+P L     
Sbjct: 20  ASKVEALRAQLNQWAHE-------YYVLDEPSVPDAEYDRVFQQLQALEGAYPALV---T 69

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQ-KKDDNSIF 127
           P+ P  ++ G +   L  V H +  LS+    + E      F  RI R  +   +D  + 
Sbjct: 70  PDSPTQRVIGAVMNGLAPVRHRVAMLSIRTETDTEASGAEAFDARIRRELKLAPEDPPVE 129

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN------- 180
           +  EPK DG  +++RYE G+ V AA RGDG  GEDV+  IR I  IP  L L+       
Sbjct: 130 YVAEPKFDGLAMSLRYEHGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLQLSAPTLGAD 189

Query: 181 --------------------IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
                                P ++EVRGEVY+ + DF  LN+     G K + NPRNAA
Sbjct: 190 ASSLPPEGARFALGRPGGETAPPVLEVRGEVYMRRADFEQLNERQREKGDKTFVNPRNAA 249

Query: 221 SGILRRLNP-TDITRYLNFFVHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANT 277
           +G +R+L+      R L+FF +GLG+      FA   Y +LQ+++  GFPV   VR A  
Sbjct: 250 AGAVRQLDSGIAAQRPLSFFAYGLGEVEGGPEFAT-HYALLQRLKAWGFPVAAQVRIALG 308

Query: 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337
             G+++++ ++ + R  LPYDIDG+VYKV+  +LQ+QLG   R PRW ++HK+  ++  T
Sbjct: 309 APGLIAFHQQIGAERDQLPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMMT 368

Query: 338 RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397
           R+  ID+Q+GRTG LTPVARL PV +GG  +TNATLHN   ++            + +RV
Sbjct: 369 RVEGIDVQVGRTGKLTPVARLAPVFVGGVTVTNATLHNLFELR-----------RKRVRV 417

Query: 398 GDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457
           GD+V+V+RAG+VIP+VV ++   R      F  P  CPIC S VVR+     G++   HR
Sbjct: 418 GDQVIVRRAGDVIPEVVGVVPAPRASYVPNFRMPRQCPICASTVVRE----PGEV--NHR 471

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517
           C+GGL C AQ+ + + HF  R A +IEGLG++ +D           IR   D+F L    
Sbjct: 472 CSGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVDGH----VIRTLPDLFRL---- 523

Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
                 +  +    + S  N+ D++ K +  +L RF+F LGIRHVG   A+ LA+++ + 
Sbjct: 524 --DLPTLAGLDRMAEKSAQNVLDALQKSKQTTLPRFLFGLGIRHVGEATAKDLARHFGA- 580

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSI 636
                 ++ I+    D    L++V  VG ++A++I  F+  P N   V  L +  V+   
Sbjct: 581 ------LDAIMDAGVD---QLLQVNDVGPVVAESIHTFFAQPHNREVVGQLRECGVAWEE 631

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
           G      +  +  K +V TGTL  + R +A++ +   GA V+  +S+KT  ++ G   GS
Sbjct: 632 GEPTAGATLPLAGKTIVLTGTLPTLSRDEAKDMLEAAGAKVAGSVSKKTHYVVAGAEAGS 691

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719
           KLEKAQ LG+ +++E+    LL+
Sbjct: 692 KLEKAQALGIPVLDEDGLRALLR 714


>gi|75759916|ref|ZP_00739987.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228899023|ref|ZP_04063296.1| DNA ligase [Bacillus thuringiensis IBL 4222]
 gi|74492583|gb|EAO55728.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228860598|gb|EEN04985.1| DNA ligase [Bacillus thuringiensis IBL 4222]
          Length = 669

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 397/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIELEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSVRVGGTI-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G++ GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGESAGSKLAQAEKHNVEVWNEERFL 664


>gi|52144941|ref|YP_081888.1| NAD-dependent DNA ligase LigA [Bacillus cereus E33L]
 gi|81689708|sp|Q63GS3|DNLJ_BACCZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51978410|gb|AAU19960.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus cereus E33L]
          Length = 669

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKTINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|254724765|ref|ZP_05186548.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. A1055]
          Length = 669

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q+ DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QEIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R    + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|218895413|ref|YP_002443824.1| DNA ligase, NAD-dependent [Bacillus cereus G9842]
 gi|228963387|ref|ZP_04124548.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|254781550|sp|B7IUW5|DNLJ_BACC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218545091|gb|ACK97485.1| DNA ligase, NAD-dependent [Bacillus cereus G9842]
 gi|228796281|gb|EEM43728.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 669

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 397/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSVRVGGTI-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G++ GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGESAGSKLAQAEKHNVEVWNEERFL 664


>gi|49479078|ref|YP_034626.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476055|ref|YP_893206.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis str. Al
           Hakam]
 gi|225862344|ref|YP_002747722.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB102]
 gi|229182688|ref|ZP_04309929.1| DNA ligase [Bacillus cereus BGSC 6E1]
 gi|81397398|sp|Q6HP94|DNLJ_BACHK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215395|sp|A0R906|DNLJ_BACAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781551|sp|C1EV74|DNLJ_BACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49330634|gb|AAT61280.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|118415280|gb|ABK83699.1| NAD-dependent DNA ligase [Bacillus thuringiensis str. Al Hakam]
 gi|225789655|gb|ACO29872.1| DNA ligase (NAD(+)) [Bacillus cereus 03BB102]
 gi|228600773|gb|EEK58352.1| DNA ligase [Bacillus cereus BGSC 6E1]
          Length = 669

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|229089420|ref|ZP_04220691.1| DNA ligase [Bacillus cereus Rock3-42]
 gi|228693897|gb|EEL47589.1| DNA ligase [Bacillus cereus Rock3-42]
          Length = 669

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|294497111|ref|YP_003560811.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551]
 gi|294347048|gb|ADE67377.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551]
          Length = 668

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 250/720 (34%), Positives = 401/720 (55%), Gaps = 63/720 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+  +  L   ++ +   YY   +P + D+EYD L      I  +FP+L  ++ P
Sbjct: 1   MEFETAKSRVQELRDLLNQYGYEYYVLDQPSVPDAEYDKLMNELIEIEESFPELKTADSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                +IGG++  +  KV H    LSL   +N EDLR F  R+    ++   +   +  E
Sbjct: 61  T---QRIGGQVLDAFEKVQHQTSMLSLGNAFNEEDLRDFDRRV----RQAVGDEFSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G  V  A RGDG +GE+++  ++ I +IP  L +  P  +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYLVLGATRGDGTTGENITENLKTIRSIP--LRIKEPLSMEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ +  F ALN+  +     P+ANPRNAA+G LR+L+P     R L+ FV+ +  T E+ 
Sbjct: 172 FMPRKSFEALNEAKMERDEVPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYAMTDTGELE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   +   T   +++Y    ++ R  L YDIDG+V KVD F 
Sbjct: 232 IDSHSESLNLLDELGFKTNRERQTCETIDDVIAYIESWQTQRPELSYDIDGIVVKVDSFD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I++KF  ++  T+L++I++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQAELGTTAKSPRWAIAYKFPAEEVVTKLVNIELTVGRTGVITPTAILEPVQVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I  +R  + Q F+ 
Sbjct: 352 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIEEKRTGEEQEFTM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR      G++  A RC    +C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECESELVR----LEGEV--ALRCINP-SCPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     I+  ADI+TL ++Q     ++      G+ S  NL  +I   +  SL
Sbjct: 454 ISQLFREQ----LIKDVADIYTLTKQQLIELERM------GEKSADNLIAAIGASKKNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A++LA+++       + I+ +     D+   L+ +  +G  +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKTLAQHF-------ETIDKLTKATYDE---LVAINEIGAKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEV----------SPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           AIV ++        V+ L+ E+           P +   E NV S    K +V TG L++
Sbjct: 554 AIVAYFTQEE----VQELIHELKEYGVNLTYKGPKLVSVE-NVDSVFAGKTVVLTGKLEQ 608

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R++A+  +  LG  V+  +S+KTD+++ G+  GSKL KA +L +++ +E + L  L +
Sbjct: 609 LSRNEAKAQIEALGGKVTGSVSKKTDLVVAGEEAGSKLTKANELEIEVWDEARLLTELNK 668


>gi|46447394|ref|YP_008759.1| NAD-dependent DNA ligase LigA [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81626502|sp|Q6MAB5|DNLJ_PARUW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46401035|emb|CAF24484.1| probable DNA ligase [Candidatus Protochlamydia amoebophila UWE25]
          Length = 665

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 248/705 (35%), Positives = 400/705 (56%), Gaps = 48/705 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K+   L  EI +H+  YY   +PII D E+DAL ++ + I  + P+      P+  +N
Sbjct: 3   TQKDYEKLCHEIWHHNKLYYIEHQPIISDEEFDALLKKLEEIERSHPEWITEFSPSQRVN 62

Query: 77  KIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
               E   S FK V H  P LSL   ++ E++  FI R+ +   K+    + F++E K+D
Sbjct: 63  ----ESLTSGFKTVAHRTPMLSLANTYSKEEIEDFIKRLQKLVGKRQ---VEFSVELKMD 115

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYIS 194
           G  IT  YE+G F     RG+G  G+D++  +R I  +P  LS  N+P+ +E+RGEV++ 
Sbjct: 116 GIAITAIYEQGIFKRGITRGNGKRGDDITTNMRMIENLPLQLSGENLPDFLEIRGEVFMP 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           +  FL LN++ +  G   +ANPRNAA+G L+ L+P  +  R L    +GL + S    K 
Sbjct: 176 RQVFLQLNEQKLQDGEVLWANPRNAAAGSLKLLDPKMVAERRLAVVFYGLAEDSSASIKK 235

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q E+    R +G P             I  +  E++S+R+ LPYDIDG+V K+++F  QK
Sbjct: 236 QAEVPSFFRSIGLPALEHHAYCQNIEQIWKFAEEIRSLRTILPYDIDGIVIKLNDFKDQK 295

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG   +SPRW I++KFA +QA TR++DI +QIGRTG+LTPVA LEP+ + G+ I  A+L
Sbjct: 296 RLGVTGKSPRWAIAYKFAAEQAKTRIIDITVQIGRTGVLTPVAELEPIFLSGSTIARASL 355

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           +N++ ++            +DIR+GD V +++ G+VIPKV+++ +++R   +QP+  P +
Sbjct: 356 YNQEEVQ-----------RKDIRIGDLVTIEKGGDVIPKVLNVELSQRPLHSQPWQMPLY 404

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C ++V+  +         A RC    +C+ QQ+ +L +FV + A +I+ +G++ +  
Sbjct: 405 CPSCGTQVINIIGE------VAVRCPNEDSCTEQQIRKLIYFVGKQAMDIKHMGEKIVIQ 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+     F I +P+DIF L   Q      I  +  F   ++ NL  SI + +++SLERF
Sbjct: 459 LFQK---GF-IHLPSDIFALTEGQ------ISQLTNFKTKAIQNLMRSIEESKHVSLERF 508

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I +L I+++G   A  LA         A  I  ++  N +D   LI++  VG  +AQA+V
Sbjct: 509 IMALEIKYIGIGTAELLAAR-------AGTIETLMQLNEED---LIKIEGVGGKVAQAVV 558

Query: 614 EFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           E +QNP++   V  LL+  V P     +   +   + K  V TG+L+   R  A   + +
Sbjct: 559 EHFQNPKHRQEVYRLLELGVCPQSKTVQIFTNHAFQGKIFVLTGSLEHYTRQSAASLIKE 618

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            G  VS  +SRKT+ ++ G  PGSKL+KA+ LG+ ++NE++F+ L
Sbjct: 619 RGGKVSDSVSRKTNYVVAGAEPGSKLDKARTLGIPVLNEKEFISL 663


>gi|134300185|ref|YP_001113681.1| NAD-dependent DNA ligase [Desulfotomaculum reducens MI-1]
 gi|190359251|sp|A4J703|DNLJ_DESRM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|134052885|gb|ABO50856.1| DNA ligase, NAD-dependent [Desulfotomaculum reducens MI-1]
          Length = 670

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 249/709 (35%), Positives = 390/709 (55%), Gaps = 48/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q++  + +L +EI++H+  YY   +P I D++YD L +    +    P+L     P+ P
Sbjct: 6   QQSKARVEALRREINHHNYQYYVLDQPTITDAQYDQLMQELLRLEERHPELV---TPDSP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG++      V H IP LSL   +   DLR+F  R+  +   ++   + + +E KI
Sbjct: 63  TQRVGGQVQRGFSSVPHKIPMLSLGNAFGEGDLREFDRRVRSYLPGEE---VKYVVELKI 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++ YEKG  V  A RGDG  GED++  ++ I  IP  L+  +P  +EVRGE Y+ 
Sbjct: 120 DGLAISLWYEKGLLVRGATRGDGELGEDITINLKTIRAIPLRLTQEVP-FLEVRGEAYMP 178

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K+ F+ LN+     G   +ANPRNAA+G LR+L+P     R L+ F++ +G         
Sbjct: 179 KDSFVRLNEAREEAGEPLFANPRNAAAGSLRQLDPKITAARNLSVFMYAIGYIEGAKPPS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  ++ LG  +N   +   +   ++ + ++ ++ R  LPY IDG+V KV+    Q+
Sbjct: 239 HAESLAWLKELGIRINPDHQVCGSIDEVIDFISQWQAKRYQLPYAIDGMVIKVNSLEQQQ 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG   +SPRW I++KF  +QA + + DI I++GRTG+LTP A LEPV + G  ++ ATL
Sbjct: 299 RLGTTMKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTTVSKATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED I+            +DIR+GD+ LV++AG++IP++V +   +R  +  PF  P  
Sbjct: 359 HNEDIIR-----------QKDIRIGDKALVQKAGDIIPEIVQVYPEKRTGNEVPFILPVT 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + VVR          AAHRCT    CSA+  E + HFVSR A +I GLG+  ++ 
Sbjct: 408 CPECGAEVVRVAGE------AAHRCTNE-NCSAKSREGIIHFVSRSAMDIMGLGEGIVNQ 460

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             K       ++ PAD++ L+        ++      G  S   L  +I   +N SL + 
Sbjct: 461 LIK----GGLVKDPADLYDLKYEDLIRQERM------GARSSQKLLAAIEASKNNSLGQL 510

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIRHVG   A+ LA+ + S Q   Q      A   D    L  +  +G  IA++I+
Sbjct: 511 LFGLGIRHVGERAAKILARQFGSMQALMQ------ATAED----LTGISEIGPRIAESIM 560

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVT 671
           E++    N   +E L K     +   E+  S++  +  K  V TGTL+   R +AQ  + 
Sbjct: 561 EYFSRQENQGLIERLSKAGVNMLEEVEQTESTDQTLSGKTFVVTGTLEGFSRQEAQRAIE 620

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + G  VS  +S+KT+ ++VG+NPGSK +KA+QLG+ I+ E+ F+ LLQQ
Sbjct: 621 ERGGKVSGSVSKKTNYVVVGENPGSKHDKARQLGITILTEQDFVKLLQQ 669


>gi|91793866|ref|YP_563517.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
 gi|123165936|sp|Q12L82|DNLJ_SHEDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91715868|gb|ABE55794.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
          Length = 670

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 251/708 (35%), Positives = 391/708 (55%), Gaps = 57/708 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++++L  E++ H+  YY    P + D+ YD L ++  A+    P+L +S+ P+    ++G
Sbjct: 7   QIANLVNELNQHNIKYYVDDAPSVTDAYYDKLMQQLLALEAEHPELIQSDSPS---RRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G       +VTH  P LSL+  +   D   F  RI          ++ +  EPK+DG  +
Sbjct: 64  GHALDKFSQVTHLKPMLSLDNAFEQADFEAFNKRI-----TDKVGTVDYVCEPKLDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDF 198
           +I Y  G+F  AA RGDG  GED++  +R I +IP  L  +  PE++EVRGEV++ K  F
Sbjct: 119 SITYRNGQFERAATRGDGTVGEDITENVRTIKSIPMGLRGDGYPELVEVRGEVFMPKAAF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---EIFAKGQ 254
            ALN    A G K + NPRNAA+G LR+L+     +R L F+ + LG      +      
Sbjct: 179 DALNARQQAKGDKTFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGEVQPMEPSH 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +  L +++  G PV+  V+  ++   + +YY+++ + R  L Y+IDG+V KV+    Q  
Sbjct: 239 FGQLAQLKRWGLPVSQEVKLCDSLEKVYAYYDDILNRRGQLSYEIDGVVIKVNAIPKQLS 298

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A++PRW I++KF  ++  T L  +D Q+GRTG +TPVARL+ V +GG  ++NATLH
Sbjct: 299 LGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLQAVFVGGVTVSNATLH 358

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +++GD V+++RAG+VIP++V I+  +R  DAQ   FP+ C
Sbjct: 359 NADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPQDAQNIVFPTHC 407

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+CQS V R      G+ VA  RC+GGL C AQ+ E +KHF SR A NI+G+G + ++  
Sbjct: 408 PVCQSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALNIDGMGDKIVEQL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     ++ PAD+F L     T   ++         S T L  +I+  +  +L RFI
Sbjct: 462 IDKE----LVQSPADLFGLTASMMTMLERMAM------KSATKLVAAIDAAKTTTLARFI 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +SLGIR VG   A +LA ++ S          + A        L+ V  VG+I+A+ I  
Sbjct: 512 YSLGIREVGEATAANLANHFKS----------LAAVREAGVEQLLEVADVGEIVAKHIRH 561

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKAQEYV 670
           F+    N+  V+ LL   +  I   E    +E    ++ +  V TGTL ++ R++A+  +
Sbjct: 562 FFDQAHNLEVVDKLL---AAGINWPEITAVAEDELRLKGQTWVLTGTLTQLNRNEAKAQL 618

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++E + L  L
Sbjct: 619 QALGAKVAGSISKNTDCLVAGEAAGSKLAKAQELGVKVIDETELLVFL 666


>gi|42779416|ref|NP_976663.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 10987]
 gi|81411242|sp|Q73EM3|DNLJ_BACC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|42735332|gb|AAS39271.1| DNA ligase, NAD-dependent [Bacillus cereus ATCC 10987]
          Length = 669

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 400/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDVNVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F+++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFEAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVKAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|229159446|ref|ZP_04287464.1| DNA ligase [Bacillus cereus R309803]
 gi|228624017|gb|EEK80825.1| DNA ligase [Bacillus cereus R309803]
          Length = 669

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 396/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQENLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDGLVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEIMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|229028145|ref|ZP_04184287.1| DNA ligase [Bacillus cereus AH1271]
 gi|228733163|gb|EEL84003.1| DNA ligase [Bacillus cereus AH1271]
          Length = 669

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|206974389|ref|ZP_03235306.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97]
 gi|217957864|ref|YP_002336408.1| NAD-dependent DNA ligase LigA [Bacillus cereus AH187]
 gi|254781553|sp|B7HSW5|DNLJ_BACC7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781554|sp|B9J1L6|DNLJ_BACCQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206747629|gb|EDZ59019.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97]
 gi|217064176|gb|ACJ78426.1| DNA ligase, NAD-dependent [Bacillus cereus AH187]
          Length = 669

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/712 (35%), Positives = 400/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++ ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F+++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFEAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|229101110|ref|ZP_04231876.1| DNA ligase [Bacillus cereus Rock3-28]
 gi|228682238|gb|EEL36349.1| DNA ligase [Bacillus cereus Rock3-28]
          Length = 669

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 398/713 (55%), Gaps = 58/713 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +EVRGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEVRGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+ T I   R L+ FV+GL    E
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLD-TKIAAKRNLSMFVYGLANVEE 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+
Sbjct: 231 KTISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDD 290

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++
Sbjct: 291 VALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIV 350

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +
Sbjct: 351 RRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEY 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG+
Sbjct: 400 RMPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGE 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  
Sbjct: 453 RVITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKEN 502

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SLER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +
Sbjct: 503 SLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKSINE----------IGEKM 552

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKKLVFTGTLQKIQ 662
           AQ++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + 
Sbjct: 553 AQSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEVMG 611

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 612 RSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|30260478|ref|NP_842855.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Ames]
 gi|49183320|ref|YP_026572.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Sterne]
 gi|50196911|ref|YP_052606.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65317730|ref|ZP_00390689.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Bacillus anthracis str. A2012]
 gi|165871348|ref|ZP_02215996.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488]
 gi|167634237|ref|ZP_02392559.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442]
 gi|167640082|ref|ZP_02398349.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193]
 gi|170688355|ref|ZP_02879564.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465]
 gi|170708762|ref|ZP_02899199.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389]
 gi|177653653|ref|ZP_02935792.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174]
 gi|190567340|ref|ZP_03020254.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|190567489|ref|ZP_03020402.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|196034623|ref|ZP_03102031.1| DNA ligase, NAD-dependent [Bacillus cereus W]
 gi|227812970|ref|YP_002812979.1| DNA ligase, NAD-dependent [Bacillus anthracis str. CDC 684]
 gi|228913034|ref|ZP_04076673.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228925550|ref|ZP_04088639.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228944102|ref|ZP_04106481.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229119952|ref|ZP_04249207.1| DNA ligase [Bacillus cereus 95/8201]
 gi|229604913|ref|YP_002864923.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248]
 gi|254686689|ref|ZP_05150547.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. CNEVA-9066]
 gi|254739086|ref|ZP_05196788.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742292|ref|ZP_05199978.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Kruger B]
 gi|254756068|ref|ZP_05208097.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Vollum]
 gi|254761885|ref|ZP_05213734.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Australia
           94]
 gi|81584374|sp|Q81ZG1|DNLJ_BACAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781547|sp|C3PBP1|DNLJ_BACAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781548|sp|C3L543|DNLJ_BACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|30253846|gb|AAP24341.1| DNA ligase (NAD(+)) [Bacillus anthracis str. Ames]
 gi|49177247|gb|AAT52623.1| DNA ligase, NAD-dependent [Bacillus anthracis str. Sterne]
 gi|50082973|gb|AAT70114.1| DNA ligase, NAD-dependent [Bacillus anthracis str. 'Ames Ancestor']
 gi|164712832|gb|EDR18361.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488]
 gi|167511893|gb|EDR87272.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193]
 gi|167530551|gb|EDR93266.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442]
 gi|170126341|gb|EDS95231.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389]
 gi|170667687|gb|EDT18441.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465]
 gi|172081233|gb|EDT66308.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174]
 gi|190561276|gb|EDV15248.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|190561467|gb|EDV15438.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|195992666|gb|EDX56626.1| DNA ligase, NAD-dependent [Bacillus cereus W]
 gi|227002604|gb|ACP12347.1| DNA ligase (NAD(+)) [Bacillus anthracis str. CDC 684]
 gi|228663418|gb|EEL19003.1| DNA ligase [Bacillus cereus 95/8201]
 gi|228815491|gb|EEM61733.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228834028|gb|EEM79576.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228846439|gb|EEM91452.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229269321|gb|ACQ50958.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248]
          Length = 669

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R    + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|184155951|ref|YP_001844291.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956]
 gi|254781353|sp|B2GDS9|DNLJ_LACF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183227295|dbj|BAG27811.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956]
          Length = 679

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/727 (34%), Positives = 407/727 (55%), Gaps = 67/727 (9%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+ +QA+ EL+ L +++      YY+   P + D  YD   +R   I   FPDL   
Sbjct: 7   VSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQRFPDLVV- 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--- 125
             P+ P  ++GG     L KVTH IP LS+  ++++ +L  F  R       + DNS   
Sbjct: 66  --PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSLAELADFNRR-------QQDNSDVK 116

Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  +++ YE G+ V  + RG+G  GEDV+  ++ I +IP+VL    P 
Sbjct: 117 VDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPE--PL 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242
            +E RGE Y+ K  F+ LN+   A G+  +ANPRNAA+G LR+L+P     R L+ F++ 
Sbjct: 175 SLEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTFMYY 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +     +    Q + L+KMR LGF VN   R  ++   + +Y  E    R  LPY IDG+
Sbjct: 235 VPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTKKRDQLPYGIDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV++ + Q  LG   + PRW I++KF  ++ +T + DI+  +GRTG +TP A ++PV 
Sbjct: 295 VEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A+LHN DY+             +DIR+GD VL+ +AG++IP++  +I+ +R 
Sbjct: 355 LAGTTVSRASLHNPDYLV-----------EKDIRLGDTVLLHKAGDIIPEISRVIIEKRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D++P+  P+ CP C + +V  L+ +      A RC   + C AQ  E L HF SR+A N
Sbjct: 404 ADSKPYEVPTTCPECGADLVH-LDDEV-----ALRCVNPM-CPAQIKEGLAHFASRNAMN 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG + ++  +        ++  AD++ L+  Q  +  K      FG+ S++NL  +I
Sbjct: 457 IDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLTLPK------FGEKSISNLLTAI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              R+ S ER +F LGIRHVGA++A+ LA  + S       ++ ++A    D  ++  V 
Sbjct: 507 ANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKS-------VDALMAA---DAATISAVD 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFT 655
            +G II  A+  ++QN   +  + A LKEV       +P+    E   S+E   K++V T
Sbjct: 557 SIGPIIGDAVATYFQN-EQVHQLIAELKEVGVNMDYLAPTTSATE---SAEWAGKRVVLT 612

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G L K+ R +AQE+++  GA V+  +S+KTD++I G+  GSKLEKAQ LG+++ +E++F 
Sbjct: 613 GKLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFD 672

Query: 716 FLLQQYN 722
             +++ N
Sbjct: 673 QAMKEEN 679


>gi|121998657|ref|YP_001003444.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1]
 gi|166215780|sp|A1WY80|DNLJ_HALHL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121590062|gb|ABM62642.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1]
          Length = 711

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/737 (34%), Positives = 393/737 (53%), Gaps = 72/737 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQA++ ++ L  EIS HD  YY   +P I D+EYDAL R    +  A+PDL  S+ P   
Sbjct: 9   EQAQQRMAQLRGEISEHDYHYYVLDRPTISDAEYDALFRELQRLEAAYPDLVSSDSPT-- 66

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++ G        V H  P LSL+  +  +DL  F  RI     +    S+ +T EPK+
Sbjct: 67  -QRVAGTAQEGFEAVVHDTPMLSLDNAFEADDLVDFDRRIR---DRLGVASVVYTGEPKL 122

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  +++ Y+ G+ V A  RGDGH+GEDV+A +R + ++P R+     P  +EVRGEV I
Sbjct: 123 DGISLSLTYQDGELVRAGTRGDGHTGEDVTANVRTLRSVPLRLRGDGYPGRLEVRGEVVI 182

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAK 252
            K DF  LN   +  G +P+ANPRNAA+G LR+L+P    R  L  F  G+G    +  +
Sbjct: 183 RKEDFERLNQARLDAGERPFANPRNAAAGSLRQLDPRITARRPLTLFTFGVGDPLALGVE 242

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +++L+ +   GF     +          +Y + +   R  LP++IDG V+KVD+ +++
Sbjct: 243 SHWQVLECLAGWGFRTTAPLEHLEGVSACQAYRDRLIEERDALPFEIDGAVFKVDDLAVR 302

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  AR+PRW ++ K   ++A+T +  I   +GRTG +TP+ARL+PV + G  +  A+
Sbjct: 303 EQLGFTARAPRWALAFKLPAREATTVVEAIVPSVGRTGKITPLARLQPVEVSGVTVARAS 362

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +  +D           +R GD V+V+RAG+VIP++ D+++ +R   AQP+ F  
Sbjct: 363 LHNADELARMD-----------VREGDTVMVRRAGDVIPQITDVVLAKRPEGAQPWRFEE 411

Query: 433 ---FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
               CP C S V R      G+  AAHRC GGL C AQ+   + HF SR A +I+GLG++
Sbjct: 412 RVQACPECGSAVQR----IEGE--AAHRCVGGLYCPAQREGAILHFASRRALDIDGLGEK 465

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++           + + AD+F L   Q     ++      GD S  NL  ++++ R+ +
Sbjct: 466 IVEQLVAK---GLVVDL-ADLFRLGHAQLAGLERM------GDKSADNLLAALDRARSTT 515

Query: 550 LERFIFSLGIRHVGAEIARSLAK--YYL--------------------SYQNFAQEINNI 587
           L RF+++LGI HVG   AR LA+  Y L                         ++ +  +
Sbjct: 516 LARFLYALGIPHVGEVTARRLAEAAYGLMVAVPRGDRAALRAAAGLDAQTAITSEALLRV 575

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN------ICAVEALLKEVSPSIGRHEK 641
           +A   DD   L  +  VG ++A+AI  F+  P N      +CA      E  P      +
Sbjct: 576 MAAPADD---LEAIEDVGPVVARAIAGFFAEPHNRQVVDHLCAAGVHWPEPDPP--EQAE 630

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           +VSS +  +  V TGTL+ + R +A+  +   G  V+  +SRKTD ++ G + GSKL KA
Sbjct: 631 SVSS-LAGRAFVVTGTLETMTRDEAKAAIEACGGRVTGSVSRKTDYLVAGADAGSKLNKA 689

Query: 702 QQLGVKIMNEEQFLFLL 718
           ++LGV+++NE     LL
Sbjct: 690 RELGVEVVNESGLRELL 706


>gi|324324305|gb|ADY19565.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 669

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F+++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFEAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|260662792|ref|ZP_05863686.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN]
 gi|260552873|gb|EEX25872.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN]
          Length = 679

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/727 (34%), Positives = 406/727 (55%), Gaps = 67/727 (9%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+ +QA+ EL+ L +++      YY+   P + D  YD   +R   I   FPDL   
Sbjct: 7   VSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQRFPDLVV- 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--- 125
             P+ P  ++GG     L KVTH IP LS+  +++  +L  F  R       + DNS   
Sbjct: 66  --PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSPAELADFNRR-------QQDNSDVK 116

Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  +++ YE G+ V  + RG+G  GEDV+  ++ I +IP+VL    P 
Sbjct: 117 VDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPE--PL 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242
            +E RGE Y+ K  F+ LN+   A G+  +ANPRNAA+G LR+L+P     R L+ F++ 
Sbjct: 175 SLEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTFMYY 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +     +    Q + L+KMR LGF VN   R  ++   + +Y  E    R  LPY IDG+
Sbjct: 235 VPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGIDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV++ + Q  LG   + PRW I++KF  ++ +T + DI+  +GRTG +TP A ++PV 
Sbjct: 295 VEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A+LHN DY+             +DIR+GD VL+ +AG++IP++  +I+ +R 
Sbjct: 355 LAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIEKRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D++P+  P+ CP C + +V  L+ +      A RC   + C AQ  E L HF SR+A N
Sbjct: 404 ADSKPYEVPTTCPECGADLVH-LDDEV-----ALRCVNPM-CPAQIKEGLAHFASRNAMN 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG + ++  +        ++  AD++ L+  Q  +  K      FG+ S++NL  +I
Sbjct: 457 IDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLTLPK------FGEKSISNLLTAI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              R+ S ER +F LGIRHVGA++A+ LA  + S       ++ ++A    D  ++  V 
Sbjct: 507 ANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKS-------VDALMAA---DAATISAVD 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFT 655
            +G II  A+  ++QN   +  + A LKEV       +P+    E   S+E   K++V T
Sbjct: 557 SIGPIIGDAVATYFQN-EQVHQLIAELKEVGVNMDYLAPTTSATE---SAEWAGKRVVLT 612

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G L K+ R +AQE+++  GA V+  +S+KTD++I G+  GSKLEKAQ LG+++ +E++F 
Sbjct: 613 GKLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFD 672

Query: 716 FLLQQYN 722
             +++ N
Sbjct: 673 QAMKEEN 679


>gi|229055132|ref|ZP_04195560.1| DNA ligase [Bacillus cereus AH603]
 gi|228721208|gb|EEL72737.1| DNA ligase [Bacillus cereus AH603]
          Length = 669

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 397/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEITKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPYRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++Q+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 AIQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLELER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKTINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|74316642|ref|YP_314382.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
 gi|123745545|sp|Q3SL40|DNLJ_THIDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|74056137|gb|AAZ96577.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
          Length = 686

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/715 (36%), Positives = 392/715 (54%), Gaps = 74/715 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QAR   ++L +EI  H+  YY    P I D+EYD L    +A+  A P+L  ++ P    
Sbjct: 7   QARA--AALRREIERHNYAYYVLDAPTIPDAEYDRLYHELEALEAAHPELVAADSPT--- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEP 132
            ++GG+       V H++P LS+  E        R F  R+ +       D  + +  E 
Sbjct: 62  RRVGGQPLAGFKPVRHAVPMLSIRTETDTTAAGARAFDVRVRKELGLAPADPPVEYAAEL 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K DG  I +RYE G  V AA RGDG +GEDV+  +R + TIP R+     P ++EVRGEV
Sbjct: 122 KFDGLAINLRYEAGVLVAAATRGDGETGEDVTQNVRTVRTIPLRLHGDAPPAVLEVRGEV 181

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI- 249
           ++ ++DF   N +  A G+    NPRN A+G +R+L+P     R L+F+ +GLG+     
Sbjct: 182 FMRRDDFERYNAQQRAAGKPTLVNPRNGAAGSIRQLDPAIAGQRPLSFYAYGLGEVVGWP 241

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                    L  ++ LG PV+      N    ++++++++ + R  LP+DIDG+VYKV+ 
Sbjct: 242 DAPATHGATLDALQGLGVPVSAERCVCNGVDDLIAFHDDIAARRDQLPFDIDGVVYKVNA 301

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ++LG   R PRW ++HK+  ++  T +L I + +GRTG LTPVARL PV +GG  +
Sbjct: 302 FALQRELGFLTREPRWAVAHKYPAQEQLTTVLGIGVHVGRTGALTPVARLAPVFVGGVTV 361

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHN+D I             +D RVGD V+V+RAG+VIP++V  ++ ER P  +P 
Sbjct: 362 TNATLHNQDEID-----------RKDTRVGDTVIVRRAGDVIPEIVATVL-ERRPQPEPP 409

Query: 429 ------SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                 S+P  CP C S VVR      G+ VA  RCTGGL C AQ+ + L HF SR A +
Sbjct: 410 RFNILQSYP-VCPECGSHVVR----LEGEAVA--RCTGGLYCPAQRKQALLHFASRRAMD 462

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLY 539
           I+G+G++ +D     E     +R PAD++ L          +E + G     + S  NL 
Sbjct: 463 IDGVGEKLVDQLVSRE----LVRTPADLYRL---------PLETLAGLERMAEKSARNLI 509

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   ++ +L RFI++LGIR+VG   AR LA+++ +       ++ ++  N     +L+
Sbjct: 510 QAIETSKSTTLARFIYALGIRNVGETTARDLARHFGA-------LDALLGANE---TALL 559

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLV 653
            V  VG I+AQ+I +F+  P N+  V  L      ++G H    +        +  K LV
Sbjct: 560 GVRDVGPIVAQSIAQFFAEPHNLEVVGKLR-----ALGVHWPETTGMQQSGGILSGKTLV 614

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            TGTL  + R +A+E +   G  V+  +S+KTD ++ G+  GSKL KA++LGV I
Sbjct: 615 LTGTLPALTRDQAKERIESAGGKVAGSVSKKTDYVVAGEEAGSKLAKARELGVTI 669


>gi|196040110|ref|ZP_03107412.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99]
 gi|196028965|gb|EDX67570.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99]
          Length = 669

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R    + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|90962320|ref|YP_536236.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118]
 gi|123391334|sp|Q1WSH6|DNLJ_LACS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|90821514|gb|ABE00153.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118]
          Length = 672

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/714 (35%), Positives = 403/714 (56%), Gaps = 65/714 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  +++   + YY    P + DS YD   +R   +  A PDL  ++ P+    ++G
Sbjct: 9   ELKELRNKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSPS---QRVG 65

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G++     KV+H IP LSL  +++ E+L +F+ R+    ++K D    ++ E KIDG  I
Sbjct: 66  GKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLERLENSVEQKLD----YSCELKIDGLAI 121

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ YE GKF+  + RG+G  GED++  ++ I  IP  + LN P  IEVRGE Y+ K  F+
Sbjct: 122 SLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIP--MELNEPVSIEVRGECYMPKKSFV 179

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM 257
            LN +  A G+  +ANPRNAA+G LR+L+ T IT  R L+ F++ L +  ++  K Q E 
Sbjct: 180 ELNTKREAEGQAVFANPRNAAAGSLRQLD-TKITASRNLSTFIYYLMEPEKLGIKTQTEA 238

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+   GF VNN  +Q  T   I +Y ++    R+ LPYDIDG+V K + F++Q Q+G 
Sbjct: 239 LNKLESWGFKVNNESKQVKTKEEIFAYIDKATDQRANLPYDIDGIVLKAESFAVQSQVGN 298

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRW I++KF   +  T++LDI+  +GRTG++TP A +EPV + G  +  A+LHN D
Sbjct: 299 TVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVARASLHNPD 358

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           Y+K            +DIR+GD V + +AG++IP++ ++++ +R  D+  +  P+ CP C
Sbjct: 359 YLK-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRTEDSVEYQIPTECPEC 407

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            +++V  L+ +      A RC     C A   E L HF SR+A +I GLG + ++  +  
Sbjct: 408 GAKLVH-LDDE-----VALRCINP-QCPALVKESLTHFASRNAMDIRGLGPRIIEQLYNR 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     I+  A I++L   Q  +  K      F + S  NL  +I+  RN S+ER IF L
Sbjct: 461 E----MIKDVAGIYSLTFEQLITLDK------FKEKSANNLLTAIDNSRNNSIERLIFGL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA++AR LA+ Y S  N A+  ++ I+           +  +G II  ++  ++ 
Sbjct: 511 GIRHVGAKVARILAENYKSMDNLAKAKSDEIS----------TIDSLGKIIGDSVEMYFA 560

Query: 618 NPRNICAVEALLKEVSPS------IGRH-----EKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +      V  LL E+  +      +G+      E +  S     ++V TGTL  ++R +A
Sbjct: 561 DEH----VMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKRSEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + ++   GA V+  +S+KTD++I G + GSKL KAQ+L V++MNE +F+  +++
Sbjct: 617 KSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEE 670


>gi|222110866|ref|YP_002553130.1| NAD-dependent DNA ligase [Acidovorax ebreus TPSY]
 gi|254781316|sp|B9MIW4|DNLJ_DIAST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221730310|gb|ACM33130.1| DNA ligase, NAD-dependent [Acidovorax ebreus TPSY]
          Length = 740

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/742 (34%), Positives = 395/742 (53%), Gaps = 83/742 (11%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +L ++++     YY    P + D+EYD   +   A+  A+PDL     P+ P  ++ 
Sbjct: 31  KIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQELQALEGAYPDLV---TPDSPTQRVL 87

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQ-KKDDNSIFFTLEPKIDG 136
           G +   L  V H +P LS+    + E    + F  R+ R  +   D   + +  EPK DG
Sbjct: 88  GAVLDGLTPVRHRVPMLSIRTETDTEASGAQAFDARVRRELKLPPDAPPVEYVAEPKFDG 147

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++RYE G+ V AA RGDG  GEDV+  +R I  IP  L   +P ++EVRGEVY+ + 
Sbjct: 148 LAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLPAGVPRVLEVRGEVYMRRA 207

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG- 253
           DF ALN+     G K + NPRNAA+G +R+L+ + IT  R L+FF +GLG+ +     G 
Sbjct: 208 DFDALNERQREKGDKTFVNPRNAAAGAVRQLD-SGITAQRPLSFFAYGLGEVTPAAEGGP 266

Query: 254 ----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                + MLQ+++  GFPV   V+ A     +++++  + + R  LPYDIDG+VYKV+  
Sbjct: 267 DFGTHFGMLQQLKEWGFPVAAQVQIAQGASELIAFHQRVGAERDALPYDIDGVVYKVNSL 326

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+GRTG LTPVARL PV +GG  +T
Sbjct: 327 ALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGVTVT 386

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII------------ 417
           NATLHN   ++            + +RVGD+V+V+RAG+VIP+VV ++            
Sbjct: 387 NATLHNLFELRR-----------KKVRVGDQVIVRRAGDVIPEVVGVVPAGAGLAVLAGS 435

Query: 418 -------------------VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
                                 R P    F  P  CPIC S VVR+     G++   HRC
Sbjct: 436 DALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVRE----PGEV--NHRC 489

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           +GGL C AQ+ + + HF  R A +IEGLG++ +D   +       IR   D++ L     
Sbjct: 490 SGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVEGH----VIRTLPDLYRL----- 540

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
              + +  +    + S  N+ D+++K +  +L RF+F LGIRHVG   A+ LA+++    
Sbjct: 541 -GLSSLAQLDRMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHF---- 595

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIG 637
                   + A  +     L++V  VG ++A+AI  F+  P N   VE L    V+    
Sbjct: 596 ------GRLDAIMDAGVEQLLQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWDES 649

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
                 +  +    +V TGTL  + R  A++ +   GA V+  +S+KT  ++ G + GSK
Sbjct: 650 EPAAAATLPLAGMTVVLTGTLPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAGSK 709

Query: 698 LEKAQQLGVKIMNEEQFLFLLQ 719
           L KAQ+LG+ +++E+    LL+
Sbjct: 710 LAKAQELGIPVLDEDGLRALLR 731


>gi|147669216|ref|YP_001214034.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1]
 gi|190359250|sp|A5FRL4|DNLJ_DEHSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146270164|gb|ABQ17156.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1]
          Length = 680

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/717 (35%), Positives = 391/717 (54%), Gaps = 63/717 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L +EI+ H+  YY    P I D++YD L RR   +  A P+L     P+ P  ++G
Sbjct: 10  EVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELV---TPDSPTQRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPKIDGT 137
            E   +   V H  P LSL   ++  +L  +  R+     KK   +I F +  EPK+DG 
Sbjct: 67  AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRV-----KKLLGNIPFQIDCEPKMDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y  GKF   A RGDG  GE+++  +R I +IP     N P + EVRGEVY+SKN 
Sbjct: 122 AVALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNG 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQY 255
           F  LN E    G   +ANPRNAA+G LR+L+P+    R L+ F++ LG + + +     +
Sbjct: 182 FAKLNRERADKGLPLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHW 241

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L     +GF +N   R  NT      YY +M + R++LPY+ DG+V+KVD  SLQ +L
Sbjct: 242 QILDYFSKIGFRINPLNRLVNTLEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHRL 301

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G+  R PRW I++KF  +Q  TRL  I I +GRTG L P A LEPVN+GG ++  A LHN
Sbjct: 302 GDVGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHN 361

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF----- 430
           ED          ++R  +DIR GD V+++RAGEVIP+VV  ++++R+P+++PF       
Sbjct: 362 ED---------DILR--KDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLF 410

Query: 431 -PSF----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+     CP+C   + R      G+  A H C   ++C AQ   +L+HFVSR A +I G
Sbjct: 411 NPNLNRTACPVCGGEIYR----PAGE--AMHYC-ANVSCPAQFERQLEHFVSRGAMDIRG 463

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G + L      +    ++   +D++ L      +T  +  +   G+ S  N+ D+I   
Sbjct: 464 IG-ESLSVILAQQGLVKNV---SDLYYL------TTADLLQLPRMGEKSADNIIDAIADS 513

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L+R IF LG+RHVG E A  L+++Y           NI A        L  +P +G
Sbjct: 514 KTRPLDRVIFGLGVRHVGNETATLLSRHY----------GNIWALAKTGLGELQTIPDIG 563

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQR 663
           D IA +IV ++   +N+  +   L+E    +   +K V+  +     + V TG L+   R
Sbjct: 564 DKIASSIVAYFSEEKNVAVIRR-LEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSR 622

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +AQE +  LG      +++ T+ ++VG + GSKL KA+ +GVK ++E +F+ +L+Q
Sbjct: 623 EEAQEKIRSLGGTAKDNVTKATNYLVVGADAGSKLTKARSMGVKELSEREFINMLEQ 679


>gi|218901495|ref|YP_002449329.1| DNA ligase, NAD-dependent [Bacillus cereus AH820]
 gi|254781549|sp|B7JM96|DNLJ_BACC0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218535434|gb|ACK87832.1| DNA ligase, NAD-dependent [Bacillus cereus AH820]
          Length = 669

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+V+++I ++R    + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVINVIFDKRTGGEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|15613212|ref|NP_241515.1| NAD-dependent DNA ligase LigA [Bacillus halodurans C-125]
 gi|15213980|sp|Q9KF37|DNLJ_BACHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|10173263|dbj|BAB04368.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+)) [Bacillus
           halodurans C-125]
          Length = 669

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 391/713 (54%), Gaps = 69/713 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE+ R +L    +E  YH   YY   KP++ D+EYD L      +  AFP+L     P+ 
Sbjct: 10  IEKLRNQL----EEYGYH---YYVLDKPLVSDAEYDGLMNELIELEEAFPELKSDTSPS- 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GG       KV H  P LSL   ++ +DLR F  R+ +       + + ++ E K
Sbjct: 62  --VRVGGPPLPHFEKVEHRTPMLSLGNAFSDQDLRDFDRRVRQVV----GDEVTYSCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++ YE G+FV  A RGDG +GED++  +R IP+IP  L L     +EVRGE ++
Sbjct: 116 IDGLAISLIYESGRFVRGATRGDGTTGEDITQNLRTIPSIP--LRLKEAVSLEVRGEAFM 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K  F ALN+   A G + +ANPRNAA+G LR+L+P     R+L+ F++ +G        
Sbjct: 174 PKRSFEALNEAKEAAGEERFANPRNAAAGSLRQLDPKLAAKRHLDAFIYAIGSVEGKELH 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +E L  ++ +GF +N       +   ++ Y N     R+ LPY+IDG+V KVD  + Q
Sbjct: 234 SHHEGLNYLKTIGFKINPESAYCESIDEVIDYVNSWLERRADLPYEIDGIVIKVDNVNFQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  A+SPRW I++KF  ++  T LLDI + +GRTG++TP A L+PV + G  +  A+
Sbjct: 294 EQLGYTAKSPRWAIAYKFPAEEVITTLLDITLNVGRTGVVTPTAELKPVTVAGTTVKRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I+            +DIR+GD V+VK+AG++IP+VV+++   R  + +PFS P+
Sbjct: 354 LHNEDLIR-----------EKDIRLGDSVVVKKAGDIIPEVVNVLTELRTGEERPFSMPT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +VR      G++  A RC     C AQ  E L HFVSR A NI+GLG++ + 
Sbjct: 403 HCPECGSELVR----LEGEV--ALRCINP-QCPAQIREGLIHFVSRQAMNIDGLGEKVIT 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F+       I   AD++ L + +     ++      G+ SV NL  SI   +  SLER
Sbjct: 456 QLFEH----GLIHNVADLYKLNKDELLQLERM------GEKSVNNLLASIETSKKSSLER 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIR VG++ A++LA ++ +     +            +  LI V  +G+ +A +I
Sbjct: 506 LLFGLGIRFVGSKAAKTLAMHFPTMTELRRA----------SYDELIAVNEIGEKMAASI 555

Query: 613 VEFYQNPRNICAVEALLKEVS----------PSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           V +++ P     V  L+ E++          P     E+   S    K +V TG LQ + 
Sbjct: 556 VSYFEKPE----VNELIDELASLGVNMTYNGPKPIGEEEIADSPFAGKTVVLTGKLQALT 611

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+ TD+++ G++ GSKL KA++L ++I +EE  +
Sbjct: 612 RGEAKEKIEALGGKVTGSVSKNTDLLVAGEDAGSKLTKAKELNIEIWDEEALV 664


>gi|121594439|ref|YP_986335.1| DNA ligase [Acidovorax sp. JS42]
 gi|166215384|sp|A1W7N4|DNLJ_ACISJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120606519|gb|ABM42259.1| DNA ligase, NAD-dependent [Acidovorax sp. JS42]
          Length = 731

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/742 (34%), Positives = 398/742 (53%), Gaps = 83/742 (11%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +L ++++     YY    P + D+EYD   ++  A+  A+PDL     P+ P  ++ 
Sbjct: 22  KIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQQLQALEGAYPDLV---TPDSPTQRVL 78

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQ-KKDDNSIFFTLEPKIDG 136
           G +   L  V H +P LS+    + E    + F  R+ R  +   D   + +  EPK DG
Sbjct: 79  GAVLDGLTPVRHRVPMLSIRTETDTEASGAQAFDARVRRELKLPPDAPPVEYVAEPKFDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++RYE G+ V AA RGDG  GEDV+  +R I  IP  L   +P ++EVRGEVY+ + 
Sbjct: 139 LAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLPAGVPPVLEVRGEVYMRRA 198

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG- 253
           DF ALN+     G K + NPRNAA+G +R+L+ + IT  R L+FF +GLG+ +     G 
Sbjct: 199 DFDALNERQREKGDKTFVNPRNAAAGAVRQLD-SGITAQRPLSFFAYGLGEVTPAAEGGP 257

Query: 254 ----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                + MLQ+++  GFPV   V+ A     +++++  + + R  LPYDIDG+VYKV+  
Sbjct: 258 DFGTHFGMLQQLKEWGFPVAAQVQIAQGASELIAFHQRVGAERDALPYDIDGVVYKVNSL 317

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+GRTG LTPVARL PV +GG  +T
Sbjct: 318 ALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGVTVT 377

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII------------ 417
           NATLHN   ++            + +RVGD+V+V+RAG+VIP+VV ++            
Sbjct: 378 NATLHNLFELRR-----------KKVRVGDQVIVRRAGDVIPEVVGVVPAGAGLAVLAGS 426

Query: 418 -------------------VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
                                 R P    F  P  CPIC S VVR+     G++   HRC
Sbjct: 427 DALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVRE----PGEV--NHRC 480

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           +GGL C AQ+ + + HF  R A +IEGLG++ +D           IR   D++ L     
Sbjct: 481 SGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVDGH----VIRTLPDLYRL----- 531

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
              + +  +    + S  N+ D+++K +  +L RF+F LGIRHVG   A+ LA+++    
Sbjct: 532 -GLSSLAQLDRMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHF---- 586

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIG 637
               +++ I+    +    L++V  VG ++A+AI  F+  P N   VE L    V+    
Sbjct: 587 ---GQLDAIMDAGVE---QLLQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWDES 640

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
                 +  +    +V TGTL  + R  A++ +   GA V+  +S+KT  ++ G + GSK
Sbjct: 641 EPAAAATLPLAGMTVVLTGTLPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAGSK 700

Query: 698 LEKAQQLGVKIMNEEQFLFLLQ 719
           L KAQ+LG+ +++E+    LL+
Sbjct: 701 LAKAQELGIPVLDEDGLHALLR 722


>gi|293376177|ref|ZP_06622422.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909]
 gi|292645164|gb|EFF63229.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909]
          Length = 669

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 260/718 (36%), Positives = 386/718 (53%), Gaps = 62/718 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L IE+  K L+    E       YY   KP + D EYD L +    +    P+L  +
Sbjct: 8   MEKLRIEELTKLLTQYNHE-------YYVLDKPSVSDREYDRLMQELMELEEKHPELKSN 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                P  ++GG++     K+ H  P LSL   +N  DLR F TR+ +   K       +
Sbjct: 61  ---TSPTVRVGGKVLEGFNKIEHEKPMLSLSNAFNEGDLRDFDTRVKKVSPKAT-----Y 112

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E KIDG  +T+ Y  G FV  A RGDG  GED+S  ++ I TIP  ++ N P  +EVR
Sbjct: 113 VCELKIDGLAVTLHYNNGAFVKGATRGDGVIGEDISENLKTIKTIPLHINNNQP--LEVR 170

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+SK     LN+E  A G + +ANPRNAA+G LR+L+      R L  F + +   +
Sbjct: 171 GEVYMSKATLEKLNEERAAKGEELFANPRNAAAGSLRQLDSRIAAKRNLAMFCYAVPSAA 230

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           ++      E LQK+  LGF VN   +       ++ Y N   + R  LPY+IDG+V KV+
Sbjct: 231 DLGCTTHEESLQKISELGFNVNPNRQVCENIDEVLEYINRWTNARFDLPYEIDGIVIKVN 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q +LG   +SPRW I++KF  ++  T L DI   +GRTG++TP A LEPV + G  
Sbjct: 291 QLQEQDKLGNTVKSPRWAIAYKFPAEEVETILTDIIFTVGRTGMVTPNAVLEPVRVAGTR 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNEDY+             RDIR+ DRV++++AGE+IP+VV  +++ R+ D  P
Sbjct: 351 VSRATLHNEDYVT-----------SRDIRINDRVIIRKAGEIIPEVVKPVIDARNGDEIP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F   S CP C S +VR+         A + C   + C A+ +E L HFVSRDA NI+GLG
Sbjct: 400 FEMISTCPRCSSELVREAGE------ADYYCL-NIDCPARIVESLSHFVSRDAMNIDGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++  F+ +     I   ADI+ L + Q     ++      GD   TNL ++I   + 
Sbjct: 453 IKVVEQLFEHK----LIENVADIYRLTKEQLLPLERM------GDKKATNLLNAIEASKE 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLE+ +F LGIRHVG++ A+ LA  +       + +++++    DD+     V  VGD+
Sbjct: 503 NSLEKLLFGLGIRHVGSKTAKVLATQF-------ENMDSLMDAKFDDFKV---VAEVGDV 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENKKLVFTGTLQKIQ 662
           IA +IV ++    N+  ++  LKE+  ++        + N       K +V TGTL+ + 
Sbjct: 553 IANSIVHYFSQTANVELIDQ-LKELGLNMSYKGARLADANTEHVFFGKTVVLTGTLETLS 611

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R +A   +  LGA VS  +S  TD +I G   GSKL KAQQLGV +++E  FL ++ +
Sbjct: 612 RKEAGIKLESLGAKVSGSISSNTDYLIAGAKSGSKLTKAQQLGVTVLDEATFLSMMNE 669


>gi|229107967|ref|ZP_04237594.1| DNA ligase [Bacillus cereus Rock1-15]
 gi|228675470|gb|EEL30687.1| DNA ligase [Bacillus cereus Rock1-15]
          Length = 669

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+LNP     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLNPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|296330120|ref|ZP_06872602.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673365|ref|YP_003865037.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296152709|gb|EFG93576.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411609|gb|ADM36728.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 668

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 248/712 (34%), Positives = 404/712 (56%), Gaps = 53/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A++    L + I+ +   YY   +P + D+EYD L +   AI    PDL     P+ P
Sbjct: 4   ETAKQRADELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTPDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +  +  KVTH  P LSL   +N +DLR F  R+ +       + + + +E KI
Sbjct: 61  TQRVGGAVLEAFQKVTHGTPMLSLGNAFNDDDLRDFDRRVRQAV----GDDVAYNVELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  ++   IEVRGE Y+ 
Sbjct: 117 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRDLS--IEVRGEAYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN+E I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+  + 
Sbjct: 175 KRSFETLNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + L  +  +GF  N   ++  +   +++  +E ++ R+ LPY+IDG+V KVD    Q+
Sbjct: 235 QSQGLDFLDEIGFKTNQERKKCGSIEEVIALIDEFQAKRADLPYEIDGIVIKVDSLDQQE 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+L
Sbjct: 295 ELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED IK            +DIR+ D+V+VK+AG++IP+VV+++V +R  + + FS P+ 
Sbjct: 355 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSMPTE 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ +  
Sbjct: 404 CPECGSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+       +R  AD++ L + Q     ++      G+ S  NL  SI K +  SLER 
Sbjct: 457 LFEEN----LVRNVADLYKLTKEQVIQLERM------GEKSTENLISSIQKSKENSLERL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR +G++ A++LA ++ S +N  +               L+ +  +G+ +A A++
Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFESLENLKKASKE----------ELLAIDEIGEKMADAVI 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668
            ++     +  +  L +    +  +  K V +E        K +V TG L+++ R+ A+ 
Sbjct: 557 TYFHKEEMLDLLNELQELGVNTHYKGPKKVKAEESDSYFAGKTIVLTGKLEELSRNDAKA 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  ++  +S+ TD++I G+  GSKL KAQ+L +++ NEEQ +  L++
Sbjct: 617 QIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668


>gi|270262950|ref|ZP_06191221.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
 gi|270043634|gb|EFA16727.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
          Length = 673

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 245/717 (34%), Positives = 408/717 (56%), Gaps = 58/717 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P + D+EYD L      + +A P+L  ++ P  
Sbjct: 1   MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMNELRELENAHPELITADSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G     +  +V H +P LSL+ +++ E    F  R+    + K    + F  E K
Sbjct: 60  --QRVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQD--RLKSSEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE++++ +R I  IP R+   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLSGDNIPRRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N+E      K +ANPRNAA+G +R+L+P     R L FF +G+G  +  E+
Sbjct: 176 MPQAGFEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +  ++ L + +  G PV++  +       ++++Y +++  R+ L +DIDG+V K+D+ 
Sbjct: 236 -PRSHWQRLMQFKNWGLPVSDRAKCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDI 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+ LG  AR+PRW  + KF  ++  T + +++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 295 DLQETLGFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVQVAGVIVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD V+V+RAG+VIPKVV +I + R  DA+   
Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPKVVGVIEDRRPQDAREIV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S V R      G+ V   RCTGGL C+AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPLHCPVCGSDVER----VEGEAVT--RCTGGLICAAQRKEALKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   + E     ++ PAD+F L      S   +  +   G  S  NL +++ K +  +
Sbjct: 458 IIEQLVEKE----YVKNPADLFRL------SAGILTGLDRMGPKSAQNLVNALEKSKRTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA ++        E+  + A + D   +L +VP VG+++A
Sbjct: 508 FARFLYALGIREVGEATAANLAAHF-------GELPKLYAADID---ALKQVPDVGEVVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKI 661
           + +  F     N   ++ L   +   IG +         + + S    K +V TG+L ++
Sbjct: 558 KHVRHFLDEELNQKVIDEL---IGAEIGINWPEVVVVAAEEIDSPFAGKTVVLTGSLSQL 614

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 615 SRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEAEMIRLL 671


>gi|134094553|ref|YP_001099628.1| DNA ligase [Herminiimonas arsenicoxydans]
 gi|166215813|sp|A4G4R4|DNLJ_HERAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|133738456|emb|CAL61501.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Herminiimonas
           arsenicoxydans]
          Length = 696

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/702 (36%), Positives = 384/702 (54%), Gaps = 52/702 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E++ H+  YY    PI+ D+EYD L R   A+  + P+L   + P     ++G    
Sbjct: 34  LRSELNRHNYAYYVLDNPIVPDAEYDQLFRELQALEASHPELLVFDSPT---QRVGALAL 90

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
            +   VTHS+P LSL   +  ED+  F  R+      +++  + +  E K DG  I +RY
Sbjct: 91  TAFPPVTHSVPMLSLGNGFEDEDVLAFDKRVSEGLNSREE--VEYATELKFDGLAINLRY 148

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALN 202
           E G  V AA RGDG +GE+V+A IR +  IP R+ + N P++++VRGEV + K D   LN
Sbjct: 149 EDGVLVQAATRGDGATGENVTANIRTVRAIPLRLHTNNPPKVLDVRGEVMMYKADLAKLN 208

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKGQYEML 258
                 G K +ANPRNAA+G LR+L+ + IT  R L FF +G+G  + +++ A     +L
Sbjct: 209 ARQRDAGAKEFANPRNAAAGSLRQLD-SRITAQRSLRFFSYGIGLLEGADMPAS-HSALL 266

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
                LG PV +         G++ +Y      R  LPY+IDG+VYKV+    Q QLG  
Sbjct: 267 DWYAELGIPVCSERAVVRGVQGLLEFYKATSEKRPQLPYEIDGVVYKVNRVDQQLQLGFV 326

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           +R+PR+ I+HKF  ++A T + DI++Q+GRTG +TPVARL PV +GG  +TNATLHNED 
Sbjct: 327 SRAPRFAIAHKFPAEEALTTVQDIEVQVGRTGAITPVARLAPVLVGGVTVTNATLHNEDE 386

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++            +DI++GD V+V+RAG+VIP+VV  +   R   A+PF  PS CP+C 
Sbjct: 387 VR-----------RKDIQIGDTVIVRRAGDVIPEVVAFVPERRPASARPFIMPSSCPVCG 435

Query: 439 SRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           S +VR  +       A  RC+GG + C+AQ+   L HFVSR A ++EGLG Q ++     
Sbjct: 436 SPIVRLEDE------AIARCSGGWVKCAAQRKGGLLHFVSRRAMDVEGLGDQLVEQLVDK 489

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   AD++ L  R      ++       D S  N+ D++ K +  +L RFI++L
Sbjct: 490 H----IITTAADLYKLGFRALAELDRM------ADKSAQNVLDALEKSKRTTLARFIYAL 539

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG   A+ LA+++           N+ A        L+ V  +G ++A +I  F+ 
Sbjct: 540 GIRHVGEATAKELARHF----------GNLDALLQASPEQLLEVADIGPVVAASITAFFT 589

Query: 618 NPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  NI  +E  L+    +   H  +N    +  K  V TGTL  + R  A E +   G  
Sbjct: 590 DAMNIELIEQ-LRAAGVTWPEHVVENRPRPLAGKTFVLTGTLPTLSRDAAAEKIEAAGGK 648

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V+  +S+KT  ++ G   GSKL KA++LGV I++E   L LL
Sbjct: 649 VAGSVSKKTSYVVAGAEAGSKLAKAEELGVTILDETGLLQLL 690


>gi|229095009|ref|ZP_04226005.1| DNA ligase [Bacillus cereus Rock3-29]
 gi|229113962|ref|ZP_04243388.1| DNA ligase [Bacillus cereus Rock1-3]
 gi|228669421|gb|EEL24837.1| DNA ligase [Bacillus cereus Rock1-3]
 gi|228688339|gb|EEL42221.1| DNA ligase [Bacillus cereus Rock3-29]
          Length = 669

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/713 (35%), Positives = 397/713 (55%), Gaps = 58/713 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+ T I   R L+ FV+GL    E
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLD-TKIAAKRNLSMFVYGLANVEE 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+
Sbjct: 231 KTISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDD 290

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++
Sbjct: 291 VALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIV 350

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +
Sbjct: 351 RRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEY 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG+
Sbjct: 400 RMPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGE 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  
Sbjct: 453 RVITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKEN 502

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SLER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +
Sbjct: 503 SLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKSINE----------IGEKM 552

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKKLVFTGTLQKIQ 662
           AQ++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + 
Sbjct: 553 AQSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEVMG 611

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 612 RSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|149183793|ref|ZP_01862194.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1]
 gi|148848496|gb|EDL62745.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1]
          Length = 668

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/715 (35%), Positives = 394/715 (55%), Gaps = 68/715 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S EQ   EL +L  + +Y    Y+   KP + D+EYD +     AI   FP+L     P+
Sbjct: 5   SAEQKVAELHNLLNQYNYE---YHVLDKPSVPDAEYDRVMNELIAIETEFPEL---RTPD 58

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG    +  KV H  P LSL   +N +DLR F  ++    ++    +  +  E 
Sbjct: 59  SPTQRVGGNTLEAFEKVEHRTPMLSLGNAFNEDDLRDFDRKV----RQAAGEAYSYVCEL 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGE 190
           KIDG  +++RYE G F   A RGDG  GED++A ++ I +IP    L IPE   +EVRGE
Sbjct: 115 KIDGLAVSLRYEDGLFSQGATRGDGTIGEDITANLKTIKSIP----LRIPEPLTMEVRGE 170

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
            ++ K  F ALN        +P+ANPRNAA+G LR+L+P    +R L+ +++ +    E 
Sbjct: 171 AFMPKRSFEALNKAKEEKEEEPFANPRNAAAGSLRQLDPRIAASRNLDIYLYSIADVGET 230

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   ++ +    ++ Y       R  LPYDIDG+V KVD  
Sbjct: 231 GVVSHSEGLDLLDKLGFKTNKERKRCSNIEEVIQYVEGWVEKRPDLPYDIDGIVIKVDSL 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG  A+SPRW I++KF  ++  T L DI++ +GRTG++TP A LEPV + G  + 
Sbjct: 291 PLQQELGTTAKSPRWAIAYKFPAEEVVTLLKDIELSVGRTGVVTPTAILEPVKVAGTTVQ 350

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DI++GD V+VK+AG++IP+VV+++   R  D Q F 
Sbjct: 351 RASLHNEDLIR-----------EKDIKIGDYVVVKKAGDIIPEVVNVLEERRTGDEQDFH 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 400 MPEECPECGSGLVR-LEKEV-----ALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEK 452

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   FK       + + ADI+ LQR Q     ++      G+ SV NL ++I   ++ S
Sbjct: 453 VISQLFKE---GLIVDV-ADIYRLQREQLLQLERM------GEKSVDNLLNAIEASKSNS 502

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ A++LA+ +       + I+N+   + D    L  +  +GD +A
Sbjct: 503 LERLLFGLGIRHVGAKAAKTLAQEF-------ENIDNLKVASKD---QLTAINEIGDKMA 552

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660
            A+V +++       V  L+ E+  +    E           + S    K +V TG L++
Sbjct: 553 DAVVAYFEKEE----VMELIGELKTAGVNTEYKGPKPVKVDEIDSYFAGKTIVLTGKLEQ 608

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R++A++ + +LG  V+  +S+KTD+++ G++ GSKL KAQ+L ++I +EE+ +
Sbjct: 609 LGRNEAKQKIEELGGKVTGSVSKKTDLLVAGEDAGSKLSKAQELQIEIWDEEKLI 663


>gi|312135376|ref|YP_004002714.1| DNA ligase, nad-dependent [Caldicellulosiruptor owensensis OL]
 gi|311775427|gb|ADQ04914.1| DNA ligase, NAD-dependent [Caldicellulosiruptor owensensis OL]
          Length = 673

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 252/703 (35%), Positives = 396/703 (56%), Gaps = 49/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  +
Sbjct: 6   KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVL---PDSPTQR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     +V H +P LSL  ++N  +L  F  R+       D +   + +E KIDG 
Sbjct: 63  VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSDFD---YVVEYKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K++
Sbjct: 120 SVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKDE 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  + +  E   +   E
Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNV-QWCEKEIETHAE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ MR LGF V+           +     +++  R +LP++IDG V K+++  L+   G
Sbjct: 237 ALEYMRKLGFKVSPDYVVCKDIKEVYEVIRKIEEKRDSLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCT G+ C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+         + N+  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 RG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S       I+++     +  L+L   P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEEQLLAL---PDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E  LK    +    +K  S+ +++   V TG L K  R++A+E +  LGA 
Sbjct: 559 RQEQTRHLIER-LKAAGVNTVSEKKAKSNILKDYTFVLTGALSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVIVGQDPGSKYTKAQQLGVKILNEEDFEKLVK 660


>gi|229042193|ref|ZP_04189947.1| DNA ligase [Bacillus cereus AH676]
 gi|228727128|gb|EEL78331.1| DNA ligase [Bacillus cereus AH676]
          Length = 669

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   ++SY  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVISYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKEIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|147678862|ref|YP_001213077.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
 gi|190359268|sp|A5CZ68|DNLJ_PELTS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146274959|dbj|BAF60708.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
          Length = 679

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 250/699 (35%), Positives = 382/699 (54%), Gaps = 57/699 (8%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           I +H+  YY   +P I D++YD L R  + +   FP L     P  P  ++GG       
Sbjct: 19  IEHHNYLYYVLDRPAITDAQYDRLMRELERLEKQFPALV---TPYSPTQRVGGRPREGFA 75

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            V H  P LSL   ++  +LR F  R+    Q      + + +E KIDG  +++ YE G 
Sbjct: 76  AVRHLSPMLSLANAFDERELRDFDRRVR---QALPGEQVRYVVELKIDGLAVSLYYENGI 132

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V  A RGDG +GED++  ++ + ++P  L   +P  +EVRGE ++ K  F  LN+    
Sbjct: 133 LVRGATRGDGDTGEDITENLKTVRSVPLRLRRPVP-ALEVRGEAFMPKEAFSRLNEGREE 191

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---EIFAKGQ-------YE 256
            G   +ANPRNAA+G LR+L+P    +R L+ FV+G G       +F  G+        E
Sbjct: 192 AGETLFANPRNAAAGSLRQLDPKITASRQLDLFVYGTGYGEWGRAVFPDGERTAPQEHAE 251

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ ++ LGF VN   R  +    +V Y    ++ R  LPY +DGLV KV+  + Q++LG
Sbjct: 252 VLELLKELGFKVNPEYRLFDRLDELVEYCLGWQARRFELPYAVDGLVIKVNSLAQQERLG 311

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW +++KF  +QA T++ DI +++GRTG+LTP A LEPV + G  ++ ATLHNE
Sbjct: 312 ATMKSPRWAVAYKFPPEQAVTKVKDIFVRVGRTGVLTPTAELEPVRLAGTTVSRATLHNE 371

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD+VLV++AG++IP+VV ++  ER    + ++ P  CP 
Sbjct: 372 DIIR-----------EKDIRIGDKVLVQKAGDIIPEVVAVLKEERTGAEKAWAMPGRCPS 420

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + VVR       +  AA RCT  +AC A+  E L HF SRDA +I GLG   +     
Sbjct: 421 CGAGVVR------AEGEAAVRCT-NMACPARLQEGLIHFASRDAMDIAGLGPAVIAQLVS 473

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +  PAD++ L+        ++      G  S  NL ++I   +  SL R IF+
Sbjct: 474 ----AGLVGDPADLYALRYEDLVPLERL------GPKSARNLLEAIEASKGRSLARLIFA 523

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG   A+ LA +Y       Q ++ +++   ++   L+ +P +G  IA +IVEF+
Sbjct: 524 LGIRHVGERAAKILANHY-------QSLSGLMSATQEE---LVNIPEIGPKIAASIVEFF 573

Query: 617 QNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            N +N   ++ L+K  V+    +  +     +  K  V TG L+   R +AQE +  LG 
Sbjct: 574 SNEQNRKVIDKLVKAGVNTLTEKVIREGGGPLNGKVFVLTGVLKDFSRQQAQELIESLGG 633

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            +S+ +SR TD ++ G+NPGSK EKA  LGVKI++E +F
Sbjct: 634 RISSSVSRNTDFVVAGENPGSKYEKALTLGVKILDENEF 672


>gi|196045221|ref|ZP_03112453.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108]
 gi|196023805|gb|EDX62480.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108]
          Length = 669

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F+++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFEAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L  + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLAVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|293569137|ref|ZP_06680444.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071]
 gi|291588184|gb|EFF20025.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071]
          Length = 679

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 248/714 (34%), Positives = 399/714 (55%), Gaps = 63/714 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S   
Sbjct: 6   MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+    QK     + +  E
Sbjct: 63  DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  + L  P  IEVRGE 
Sbjct: 119 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+ + IT  R L+ F++ +     +
Sbjct: 177 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EF
Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V  L+ +      A RC     C AQ  E LKHFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLKHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +   D      + AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 458 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSK----------SDYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660
            ++V ++ N      V  L+ E+  +    E         + V S  + K +V TG L +
Sbjct: 558 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTR 613

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q 
Sbjct: 614 FTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 667


>gi|229148695|ref|ZP_04276945.1| DNA ligase [Bacillus cereus m1550]
 gi|228634703|gb|EEK91282.1| DNA ligase [Bacillus cereus m1550]
          Length = 669

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 396/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I K +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIEKSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMKYKGIKIADLQNVESYFVGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|325838923|ref|ZP_08166729.1| DNA ligase (NAD+) [Turicibacter sp. HGF1]
 gi|325490664|gb|EGC92975.1| DNA ligase (NAD+) [Turicibacter sp. HGF1]
          Length = 662

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 260/718 (36%), Positives = 385/718 (53%), Gaps = 62/718 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L IE+  K L+    E       YY   KP + D EYD L +    +    P+L  +
Sbjct: 1   MEKLRIEELTKLLTQYNHE-------YYVLDKPSVSDREYDRLMQELMELEEKHPELKSN 53

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                P  ++GG++     K+ H  P LSL   +N  DLR F TR+ +   K       +
Sbjct: 54  ---TSPTVRVGGKVLEGFNKIEHEKPMLSLSNAFNEGDLRDFDTRVKKVSPKAT-----Y 105

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E KIDG  +T+ Y  G FV  A RGDG  GED+S  ++ I TIP  ++ N P  +EVR
Sbjct: 106 VCELKIDGLAVTLHYNNGAFVKGATRGDGVIGEDISENLKTIKTIPLHINNNQP--LEVR 163

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+SK     LN+E  A G + +ANPRNAA+G LR+L+      R L  F + +   +
Sbjct: 164 GEVYMSKATLEKLNEERAAKGEELFANPRNAAAGSLRQLDSRIAAKRNLAMFCYAVPSAA 223

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           ++      E LQK+  LGF VN   +       ++ Y N   + R  LPY+IDG+V KV+
Sbjct: 224 DLGCTTHEESLQKISELGFNVNPNRQVCENIDEVLEYINRWTNARFDLPYEIDGIVIKVN 283

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q +LG   +SPRW I++KF  ++  T L DI   +GRTG++TP A LEPV + G  
Sbjct: 284 QLQEQDKLGNTVKSPRWAIAYKFPAEEVETILTDIIFTVGRTGMVTPNAVLEPVRVAGTR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNEDY+             RDIR+ DRV++++AGE+IP+VV  +++ R+ D  P
Sbjct: 344 VSRATLHNEDYVT-----------SRDIRINDRVIIRKAGEIIPEVVKPVIDARNGDEIP 392

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F   S CP C S +VR+         A + C   + C A+ +E L HFVSRDA NI+GLG
Sbjct: 393 FEMISTCPRCSSELVREAGE------ADYYCL-NIDCPARIVESLSHFVSRDAMNIDGLG 445

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++  F+ +     I   ADI+ L + Q     ++      GD   TNL ++I   + 
Sbjct: 446 IKVVEQLFEHK----LIENVADIYRLTKEQLLPLERM------GDKKATNLLNAIEASKE 495

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLE+ +F LGIRHVG++ A+ LA  +       + +++++    DD+     V  VGD+
Sbjct: 496 NSLEKLLFGLGIRHVGSKTAKVLATQF-------ENMDSLMDAKFDDFKV---VAEVGDV 545

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENKKLVFTGTLQKIQ 662
           IA +IV ++    N+  +   LKE+  ++        + N       K +V TGTL+ + 
Sbjct: 546 IANSIVHYFSQTANVELINQ-LKELGLNMSYKGARLADANTEHVFFGKTVVLTGTLETLS 604

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R +A   +  LGA VS  +S  TD +I G   GSKL KAQQLGV +++E  FL ++ +
Sbjct: 605 RKEAGIKLESLGAKVSGSISSNTDYLIAGAKSGSKLTKAQQLGVTVLDEATFLSMMNE 662


>gi|323490410|ref|ZP_08095622.1| DNA ligase [Planococcus donghaensis MPA1U2]
 gi|323395909|gb|EGA88743.1| DNA ligase [Planococcus donghaensis MPA1U2]
          Length = 668

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 249/707 (35%), Positives = 401/707 (56%), Gaps = 55/707 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A + +  L + +  +   YY   KP + D+ YD L      +   +PDL     P+ P 
Sbjct: 5   KAEQRVDELNEMLRNYGHAYYVLDKPAVPDAIYDQLLNELIDLETLYPDLVF---PDSPT 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG    ++ KVTH  P LSL  ++  EDLR+F  R+      K D    +  E KID
Sbjct: 62  QRVGGAPLSTVDKVTHERPMLSLSNVFGEEDLREFDKRVRSGAGDKVD----YVCELKID 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YE GKFV  A RGDG  GED++  +R I  IP  L L     +EVRGEV++ K
Sbjct: 118 GLAVSLLYEDGKFVKGATRGDGRVGEDITVNLRTIRAIP--LKLKDAVTLEVRGEVFMPK 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F ALN++    G + +ANPRNAA+G LR+L+P    +R L+ F++G+G   E +   +
Sbjct: 176 KSFHALNEQRSEQGEELFANPRNAAAGSLRQLDPKIAASRNLDVFIYGIGGDGETYRLAE 235

Query: 255 Y-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           + E L  +  LGF  N   +   +   +++Y  +    R+ LPY+IDG+V KV++F  Q+
Sbjct: 236 HDESLDYLAKLGFKTNQERQVCTSVEEVLAYIEKWTEKRNDLPYEIDGIVIKVNQFLYQQ 295

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SP+W  ++KF  ++  T + DI++ +GRTG++TP A L+PV++ G  +  A+L
Sbjct: 296 ELGFTAKSPKWATAYKFPAEEVMTTVRDIELSVGRTGVVTPTAILDPVSVAGTTVQRASL 355

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED IK            +DIR+GD+V++++AG++IP+VV +I+++R  +  PF  P+ 
Sbjct: 356 HNEDLIK-----------EKDIRIGDKVIIRKAGDIIPEVVSVILDQRTGEELPFEMPTH 404

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ ++ 
Sbjct: 405 CPACDSELVR----IEGEV--ALRCVNP-QCPAQITEGLIHFVSRNAMNIDGLGEKVIEQ 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            ++ E     I   +DI+ L + Q     ++       D S +NL  +I+  R+ S+E+ 
Sbjct: 458 LYR-EGLVHDI---SDIYKLTKEQLVELDRM------ADKSASNLVAAIDASRSNSMEKL 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIRHVG   AR L++++ +       +  +IA   ++   LI V  +GD +A +IV
Sbjct: 508 LFGLGIRHVGERGARILSEHFGT-------LEQLIAATKEE---LIEVHEIGDKMADSIV 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668
            ++ N      VE  L+E + ++      V  E        KK+V TG L+++ R +A  
Sbjct: 558 MYFDNEEVRALVER-LREANVNLSYTGTRVRVEEGANAFAGKKIVLTGKLEQMTRQEASA 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +  LG  ++  +S+KTD++I G+  GSKL+KA++L V+I +EE+ +
Sbjct: 617 QIEALGGKLTGSVSKKTDLLIAGEEAGSKLDKARELKVEIWDEERLV 663


>gi|228906068|ref|ZP_04069957.1| DNA ligase [Bacillus thuringiensis IBL 200]
 gi|228853477|gb|EEM98245.1| DNA ligase [Bacillus thuringiensis IBL 200]
          Length = 669

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  
Sbjct: 59  -SPSVRVGGTI-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 SLQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|300214970|gb|ADJ79386.1| DNA ligase(Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
           salivarius CECT 5713]
          Length = 672

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 250/714 (35%), Positives = 403/714 (56%), Gaps = 65/714 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  +++   + YY    P + DS YD   +R   +  A PDL  ++ P+    ++G
Sbjct: 9   ELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSPS---QRVG 65

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G++     KV+H IP LSL  +++ E+L +F+ R+    ++K D    ++ E KIDG  I
Sbjct: 66  GKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLERLENSVEQKLD----YSCELKIDGLAI 121

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ YE GKF+  + RG+G  GED++  ++ I  IP  + LN P  IEVRGE Y+ K  F+
Sbjct: 122 SLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIP--MELNEPVSIEVRGECYMPKKSFV 179

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM 257
            LN +  A G+  +ANPRNAA+G LR+L+ T IT  R L+ F++ L +  ++  K Q E 
Sbjct: 180 ELNTKREAEGQAVFANPRNAAAGSLRQLD-TKITASRNLSTFIYYLMEPEKLGIKTQTEA 238

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+   GF VNN  +Q  T   I +Y ++    R+ LPYDIDG+V K + F++Q Q+G 
Sbjct: 239 LNKLESWGFKVNNESKQVKTKEEIFAYIDKATDQRANLPYDIDGIVLKAESFAVQSQVGN 298

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRW I++KF   +  T++LDI+  +GRTG++TP A +EPV + G  +  A+LHN D
Sbjct: 299 TVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVARASLHNPD 358

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           Y++            +DIR+GD V + +AG++IP++ ++++ +R  D+  +  P+ CP C
Sbjct: 359 YLR-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRSEDSVEYQIPTECPEC 407

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            +++V  L+ +      A RC     C A   E L HF SR+A +I GLG + ++  +  
Sbjct: 408 GAKLVH-LDDE-----VALRCINP-QCPALVKESLTHFASRNAMDIRGLGPRIIEQLYNR 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     I+  A I++L   Q  +  K      F + S  NL  +I+  RN S+ER IF L
Sbjct: 461 E----MIKDVAGIYSLTFEQLITLDK------FKEKSANNLLTAIDNSRNNSIERLIFGL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA++AR LA+ Y S  N A+  ++ I+           +  +G II  ++  ++ 
Sbjct: 511 GIRHVGAKVARILAENYKSMDNLAKAKSDEIS----------TIDSLGKIIGDSVEMYFA 560

Query: 618 NPRNICAVEALLKEVSPS------IGRH-----EKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +      V  LL E+  +      +G+      E +  S     ++V TGTL  ++R +A
Sbjct: 561 DEH----VMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKRSEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + ++   GA V+  +S+KTD++I G + GSKL KAQ+L V++MNE +F+  +++
Sbjct: 617 KSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEE 670


>gi|323697702|ref|ZP_08109614.1| DNA ligase, NAD-dependent [Desulfovibrio sp. ND132]
 gi|323457634|gb|EGB13499.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans ND132]
          Length = 684

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 252/718 (35%), Positives = 404/718 (56%), Gaps = 63/718 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + ++ L Q+I +H+  YY    P I D E+D L R   A+    P+L   +DPN P
Sbjct: 4   ESVAERVAELRQKIDHHNYRYYVLDDPEISDQEFDVLFRELAALEAEHPEL---DDPNSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE         H++   SL+   +++    F  R+ +   + D   + +  +PK+
Sbjct: 61  TRRVGGEPASGFTPYEHALRLYSLDNAMDLDAWYAFHERVAKGVGRAD---VAYWADPKM 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEV 191
           DG  + + YE G++V AA RGDG  GEDV+A +R +  +P  LSL   ++PE++EVRGEV
Sbjct: 118 DGLALEVIYENGRYVRAATRGDGLVGEDVTANMRTVMNLP--LSLHGDDVPELLEVRGEV 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT---- 246
            ++  DF ALN      G K +ANPRNAA+G +R+L+P    +R L F  +G+G+     
Sbjct: 176 VMANRDFAALNARQEEKGEKVFANPRNAAAGTIRQLDPKVAASRPLRFMAYGVGRVEWPG 235

Query: 247 -SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +  +A  Q  +++ +R LGF +   V+   +   +  Y+ ++ +IR+TLP++IDG+V K
Sbjct: 236 RASDWAT-QQALMEGLRDLGFAIPPDVKLCASAKAVADYFQQLGAIRATLPFEIDGMVAK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++  +Q+ LG  AR+PRW ++ KF   Q  TRL  I +Q+GRTG+LTPVA LEPV + G
Sbjct: 295 VNDREMQEALGYTARAPRWALALKFPAHQTRTRLNAIRVQVGRTGVLTPVAELEPVELAG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHN+ YI             RD+RVGD VL++RAG+VIP+V+   + +R  +A
Sbjct: 355 VVVSNATLHNKGYI-----------AERDLRVGDTVLIQRAGDVIPQVLSADLEQRPENA 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF FP  CP+C+S  V D     G+ V    CT   AC A+ ++RL HFVS+   ++EG
Sbjct: 404 EPFVFPMVCPVCESPAVED-----GERVV---CTNP-ACPAKTVQRLIHFVSKAGMDMEG 454

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK- 544
           +GKQ +     +ED   +    AD+FTL++      T +    G GD S  N   +I K 
Sbjct: 455 VGKQWVRKL--AEDGVLN--SAADLFTLKK------TDLLKYGGMGDKSAENFLKAIEKA 504

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +    L R +  LGIRH+G + AR+LA  +       + ++ +     DD   L  +  +
Sbjct: 505 KAEAPLWRLVAGLGIRHIGEQAARTLAARF-------KNLDELFGATLDD---LTGLDGI 554

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661
           GD++A+++++F  +  N   ++   +  V P  G   +  S E  +  K  +FTGTL  I
Sbjct: 555 GDVMAESVLDFRVDAANREMIDRFRELGVWPEGGAPAEEPSDELPLAGKVFIFTGTL-PI 613

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R +A   V   G +    +S+K D ++ G+  GSK+ KA++LG+++++ + F  LL+
Sbjct: 614 SRDEAWAMVEARGGIPVKSISKKVDYVVAGEKAGSKIAKAEKLGLEVIDFDAFKALLE 671


>gi|229171138|ref|ZP_04298732.1| DNA ligase [Bacillus cereus MM3]
 gi|228612316|gb|EEK69544.1| DNA ligase [Bacillus cereus MM3]
          Length = 669

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG M L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  
Sbjct: 59  -SPSIRVGG-MVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LE V + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEAVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++        E  + +    ++ L  I    +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|239618216|ref|YP_002941538.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
 gi|239507047|gb|ACR80534.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
          Length = 672

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/708 (36%), Positives = 389/708 (54%), Gaps = 51/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE+A+K    L +E++YH   YY  + PII D EYD + +    +   +P+L     P+ 
Sbjct: 8   IERAKK----LREELNYHAYRYYVLNDPIITDEEYDRMLKELQELEKKYPELI---TPDS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  +IG +      +V HS    SL+  ++ E+L+ F  RI +     +   + +  E K
Sbjct: 61  PTQRIGAKPLNGFEQVIHSSRLYSLDNTYSEEELKGFDRRIKKLL---NVEQLDYVCELK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  +T+RYE+G  V  A RGDG  GE+V+  IR I +IP  L L  P  IE+RGEVY+
Sbjct: 118 IDGLSVTLRYEEGILVLGATRGDGTVGENVTKNIRTIKSIP--LRLRKPLTIEIRGEVYL 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K++F  +NDE        +ANPRNAA+G LR+L+P ++  R L+ F + +        +
Sbjct: 176 PKSEFKKINDERAEQELPLFANPRNAAAGTLRQLDPKEVAKRNLDAFFYQIVSPENYELE 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q+E+LQ ++ +G       R  +    ++ ++ E    R+ L Y IDGLV KV+    Q
Sbjct: 236 TQWEVLQFLKEIGMKTEPHARLVSDISEVIEFWKEWSESRNNLDYAIDGLVVKVNRIEFQ 295

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  A+SPRW I+ KF  +QA T+LLD+  Q+GRTG++TPVA LEPV + G ++  AT
Sbjct: 296 NKLGYTAKSPRWAIAFKFPAEQARTKLLDVTFQVGRTGVITPVAELEPVKLAGTIVKRAT 355

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYI+            RDIR+GD V+V++AGE+IP++V  I   R    +    PS
Sbjct: 356 LHNFDYIR-----------DRDIRIGDTVIVEKAGEIIPQIVKPIAETRSGKEKVIEPPS 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +V      K  +   A RC    AC A+   R+  FVSR+A +I GLG++ + 
Sbjct: 405 SCPVCGGKV-----GKAKEDEVALRCLNP-ACPAKTERRILLFVSRNAMDINGLGEKMIK 458

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               S      ++ PAD++ L         ++ N  G G+ ++ N Y  + K R   L +
Sbjct: 459 RLVHS----GLVKSPADLYKL---TPFDLAQLGN--GIGEKTIRNFYKELEKSRKRPLHK 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +  LGI  VG ++AR LA+++            + A  N     L+ VP +G  +A+ I
Sbjct: 510 LLAGLGIPGVGVKLARDLAEHF----------KTLDALQNATIDQLLEVPGIGLELAKNI 559

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           VEF+  P     +E L KEV+ S           ++ KK V TGTL+   R +A+E +  
Sbjct: 560 VEFFNLPEIKEEIEHLKKEVNTS--ERSSKKEELLKGKKFVLTGTLKNFTRKEAEELIVS 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           LG  VS+ +S+ TD ++VG+NPGSK +KA+ L VK +NEE+F+ L+++
Sbjct: 618 LGGKVSSSVSKNTDFVVVGENPGSKFQKAKALNVKTINEEEFIKLIRE 665


>gi|307289585|ref|ZP_07569529.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109]
 gi|306499399|gb|EFM68772.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109]
 gi|315164584|gb|EFU08601.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1302]
          Length = 676

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 245/713 (34%), Positives = 399/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+++   K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVHKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668


>gi|218230787|ref|YP_002365135.1| NAD-dependent DNA ligase LigA [Bacillus cereus B4264]
 gi|254781552|sp|B7H4U8|DNLJ_BACC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218158744|gb|ACK58736.1| DNA ligase (NAD(+)) [Bacillus cereus B4264]
          Length = 669

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMKYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|228956728|ref|ZP_04118514.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229143090|ref|ZP_04271523.1| DNA ligase [Bacillus cereus BDRD-ST24]
 gi|296501121|ref|YP_003662821.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171]
 gi|228640363|gb|EEK96760.1| DNA ligase [Bacillus cereus BDRD-ST24]
 gi|228802916|gb|EEM49748.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296322173|gb|ADH05101.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171]
          Length = 669

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDSANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|257887196|ref|ZP_05666849.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733]
 gi|257823250|gb|EEV50182.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733]
          Length = 678

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 248/723 (34%), Positives = 403/723 (55%), Gaps = 63/723 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S   
Sbjct: 5   MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 61

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+    QK     + +  E
Sbjct: 62  DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  + L  P  IEVRGE 
Sbjct: 118 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+ + IT  R L+ F++ +     +
Sbjct: 176 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 404 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +   D      + AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 457 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSR----------SDYESIIALDTIGDIIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660
            ++V ++ N      V  L+ E+  +    E         + V S  + K +V TG L +
Sbjct: 557 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTR 612

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L Q
Sbjct: 613 LTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAQ 672

Query: 721 YNT 723
            ++
Sbjct: 673 SHS 675


>gi|296126514|ref|YP_003633766.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563]
 gi|296018330|gb|ADG71567.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563]
          Length = 663

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 249/707 (35%), Positives = 395/707 (55%), Gaps = 48/707 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+A++++  L + I+YH+  YY    P I D EYD L R  + +   FP+L +    
Sbjct: 1   MNKEEAKQKIKQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P NK+GG +     K  H I   SL  + N E+   F  R+ R   + D ++I +T+E
Sbjct: 58  DSPTNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLDFDNRMQR---ELDASNIKYTVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + YEKGK   A+ RGDG  GE+V+  ++ +  +P+  S+     + VRGE 
Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMSNVPK--SIKEKNKLIVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            I+K DF ALN E   +   P+AN RNAASG LR+L+  +   R L FF + +    +  
Sbjct: 173 LITKKDFEALNKEREELEEIPFANARNAASGGLRQLDSAESKKRRLKFFAYQIANYKDFD 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              +Y+ ++ +  LGF V  GV        ++  Y +++  RS + Y+IDGLV KVD+  
Sbjct: 233 LTNEYKSMEFLSDLGFTVE-GVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVK 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +R+PR+ ++ KF  ++  T L +I++Q+GRTG LTPVA+LEPV +GG  ++N
Sbjct: 292 YQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN + IK            +DIR+GD V+V R+G+VIPK+  +++ +R  D++PF F
Sbjct: 352 VTLHNPNEIK-----------SKDIRIGDTVVVIRSGDVIPKITRVVLEKRPEDSKPFEF 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C      D     G ++   RC     C ++    +++FVS+ A N+E +GK+ 
Sbjct: 401 PKKCPVCGG----DTAVTDGDVIV--RCINE-ECPSKITRYIEYFVSKPAMNMERIGKEW 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F KS      ++ PAD++ + R       K E +   GD   + + +SI   +N +L
Sbjct: 454 IAVFTKSG----LVKTPADLYKITR---DDLFKFERM---GDKLASYMLESIENSKNTTL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFI++LGIR VG   A  LAKY+ S +NF +      A   D    L  +  +G+I A+
Sbjct: 504 KRFIYALGIRQVGETTADLLAKYFTSIENFKK------AAIED----LQNIEGIGEISAK 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F  N R +  ++ LL      +      V S +  K +V TG+++   R  A+E  
Sbjct: 554 SIYDFLHNERTLKLIDDLLAAGVNPVFEKVVTVESPLTGKNVVITGSIEGFTRTSAKEAA 613

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +LGA V + +S+ TDI+IVG+  GSKL+KAQ LG+ IM  ++F+ L
Sbjct: 614 ERLGAAVQSAVSKNTDILIVGEKAGSKLKKAQDLGIAIMEADEFIKL 660


>gi|227515527|ref|ZP_03945576.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931]
 gi|227086140|gb|EEI21452.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931]
          Length = 679

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/727 (34%), Positives = 405/727 (55%), Gaps = 67/727 (9%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+ +QA+ EL+ L +++      YY+   P + D  YD   +R   I   FPDL   
Sbjct: 7   VSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQRFPDLVV- 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--- 125
             P+ P  ++GG     L KV H IP LS+  +++  +L  F  R       + DNS   
Sbjct: 66  --PDSPTQRVGGAAESQLNKVIHEIPMLSMGDVFSPAELADFNRR-------QQDNSDVK 116

Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  +++ YE G+ V  + RG+G  GEDV+  ++ I +IP+VL    P 
Sbjct: 117 VDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPE--PL 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242
            +E RGE Y+ K  F+ LN+   A G+  +ANPRNAA+G LR+L+P     R L+ F++ 
Sbjct: 175 SLEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTFMYY 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +     +    Q + L+KMR LGF VN   R  ++   + +Y  E    R  LPY IDG+
Sbjct: 235 VPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGIDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV++ + Q  LG   + PRW I++KF  ++ +T + DI+  +GRTG +TP A ++PV 
Sbjct: 295 VEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A+LHN DY+             +DIR+GD VL+ +AG++IP++  +I+ +R 
Sbjct: 355 LAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIEKRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D++P+  P+ CP C + +V  L+ +      A RC   + C AQ  E L HF SR+A N
Sbjct: 404 ADSKPYEVPTTCPECGADLVH-LDDEV-----ALRCVNPM-CPAQIKEGLAHFASRNAMN 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG + ++  +        ++  AD++ L+  Q  +  K      FG+ S++NL  +I
Sbjct: 457 IDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLTLPK------FGEKSISNLLTAI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              R+ S ER +F LGIRHVGA++A+ LA  + S       ++ ++A    D  ++  V 
Sbjct: 507 ANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKS-------VDALMAA---DAATISAVD 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFT 655
            +G II  A+  ++QN   +  + A LKEV       +P+    E   S+E   K++V T
Sbjct: 557 SIGPIIGDAVATYFQN-EQVHQLIAELKEVGVNMDYLAPTTSATE---SAEWAGKRVVLT 612

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G L K+ R +AQE+++  GA V+  +S+KTD++I G+  GSKLEKAQ LG+++ +E++F 
Sbjct: 613 GKLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFD 672

Query: 716 FLLQQYN 722
             +++ N
Sbjct: 673 QAMKEEN 679


>gi|30018549|ref|NP_830180.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 14579]
 gi|229125792|ref|ZP_04254818.1| DNA ligase [Bacillus cereus BDRD-Cer4]
 gi|81436035|sp|Q81IP2|DNLJ_BACCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29894090|gb|AAP07381.1| NAD-dependent DNA ligase [Bacillus cereus ATCC 14579]
 gi|228657649|gb|EEL13461.1| DNA ligase [Bacillus cereus BDRD-Cer4]
          Length = 669

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|256959858|ref|ZP_05564029.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96]
 gi|293385046|ref|ZP_06630880.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712]
 gi|293389317|ref|ZP_06633778.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613]
 gi|312906035|ref|ZP_07765048.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512]
 gi|312909381|ref|ZP_07768237.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516]
 gi|256950354|gb|EEU66986.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96]
 gi|291077724|gb|EFE15088.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712]
 gi|291081339|gb|EFE18302.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613]
 gi|310628030|gb|EFQ11313.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512]
 gi|311290405|gb|EFQ68961.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516]
          Length = 676

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 246/713 (34%), Positives = 399/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+II
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRATAE----------EIVALDSIGEII 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668


>gi|228937587|ref|ZP_04100225.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228970474|ref|ZP_04131125.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228977043|ref|ZP_04137446.1| DNA ligase [Bacillus thuringiensis Bt407]
 gi|228782660|gb|EEM30835.1| DNA ligase [Bacillus thuringiensis Bt407]
 gi|228789206|gb|EEM37134.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228822068|gb|EEM68058.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326938080|gb|AEA13976.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 669

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  
Sbjct: 59  -SPSVRVGGTI-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|83590843|ref|YP_430852.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073]
 gi|123739230|sp|Q2RGY0|DNLJ_MOOTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83573757|gb|ABC20309.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073]
          Length = 666

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 263/714 (36%), Positives = 393/714 (55%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +  AR+ +  L + I  H+  YY   +P I D EYDAL +   A+  A+P+L     P
Sbjct: 1   MDLAAARQRVEELRRLIEEHNYRYYVLDQPSISDREYDALMQELIALEEAYPEL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +V H    LSL   +N  DL +F  R+     +     + + +E
Sbjct: 58  DSPSQRVGGAPREEFNQVRHPQVLLSLNDAFNEGDLLEFDRRVRDLAGR----PVEYVIE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + Y  G F   A RGDG  GE+V+A ++ IP +P  L   +P ++ VRGEV
Sbjct: 114 AKIDGLAVALTYRDGLFTLGATRGDGQVGEEVTANLKTIPALPLRLRRPLPFLV-VRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN      G   +ANPRNAA+G LR+L+P    +R L+ FV+ +   +   
Sbjct: 173 YMPKVAFTALNAAREEAGEPLFANPRNAAAGSLRQLDPKITASRSLSLFVYQVISLTGAE 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI----RSTLPYDIDGLVYKV 306
              Q   L  +  LGFPVN     A     ++    E+K+     R++LPY+IDGLV KV
Sbjct: 233 VATQAGALDFLAELGFPVNPYRVVAPDIQAVL---EEVKAWTPERRASLPYEIDGLVIKV 289

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +L   LG  A++PRW +++KF  +QA+ R+  I +++GRTG+LTP A L PV + G 
Sbjct: 290 NDLALHSVLGATAKAPRWAMAYKFPAEQATARVEGIILRVGRTGVLTPTAVLTPVRLAGT 349

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATLHNEDYI+            +DIR+GD V+V++AG++IP+VV +I   R    +
Sbjct: 350 TVSRATLHNEDYIR-----------EKDIRIGDTVIVQKAGDIIPEVVAVIPERRTGSEE 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F+ P  CP C + VVR      G+  AAHRCTGGLAC AQ LE + HF SR A +I+GL
Sbjct: 399 VFTMPERCPACGAAVVR----PPGE--AAHRCTGGLACPAQVLEGIIHFASRGAMDIQGL 452

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G   +    +    A  I   AD++ L   ++    K+E    FG  S +NL  +I   +
Sbjct: 453 GPAIVAQLLE----AGLIHDAADLYYL---KEEDLLKLER---FGQQSASNLLAAIAASK 502

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              LER IF+LGIR+VG   AR LA ++ S       ++ + A   ++  +L   P +G 
Sbjct: 503 KQPLERLIFALGIRNVGQRAARVLADHFGS-------LDKLAAATVEELTAL---PDIGP 552

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            IA+ I EF+  PRN   +E L K        +    +  +  K  V TGTL  + R +A
Sbjct: 553 RIAENIREFFGEPRNRAVLEKLKKAGVRLEALNAAAPAGPLTGKVFVLTGTLPGMTRQEA 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +E +T+ G  VS+ +SRKTD ++ G+ PGSKL++A++LGV ++N +    LL+Q
Sbjct: 613 EELITRAGGKVSSSVSRKTDYVVAGEKPGSKLDRARELGVPVINADGLRQLLRQ 666


>gi|228476354|ref|ZP_04061055.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119]
 gi|228269637|gb|EEK11143.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119]
          Length = 667

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 250/708 (35%), Positives = 387/708 (54%), Gaps = 56/708 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I+    EL  L  + SY    YY    P + DSEYD L R    I +A P+L +++D  
Sbjct: 3   NIQNRVNELHDLLNQYSYE---YYVKDNPSVPDSEYDKLLRELIDIENAHPEL-KTDD-- 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GGE   S  KV H  P LSL   +N E+LR+F  RI     ++   ++ +  E 
Sbjct: 57  SPTVRVGGEAQSSFEKVNHETPMLSLGNAFNEEELRRFDERI-----REHIGNVEYMCEL 111

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P  +EVRGE Y
Sbjct: 112 KIDGLAVSLKYEDGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNVEVRGEAY 169

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + +  F+ LNDE      +P+ANPRNAA+G LR+L+P     R L+ F++ +   ++  A
Sbjct: 170 MPRRSFMRLNDEREKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFSA 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q + L ++  LGF  N+   +     G++ Y  +    R  L YDIDG+V KV++   
Sbjct: 230 TTQSDALDELDRLGFKTNHERARVEDIEGVLEYIKKWTKQREQLSYDIDGIVIKVNDLDQ 289

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q ++G   +SPRW I++KF  ++  T L DI++ IGRTG++TP A LEP+ + G  ++ A
Sbjct: 290 QDEMGFTQKSPRWAIAYKFPAEEVVTELKDIELSIGRTGVVTPTAILEPIRVAGTTVSRA 349

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED IK            RDIR+GD V+VK+AG++IP+VV  I++ R  DA+P+  P
Sbjct: 350 SLHNEDLIK-----------ERDIRIGDSVIVKKAGDIIPEVVRSIIDRRPNDAKPYHMP 398

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C   +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +
Sbjct: 399 THCPSCGHELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGNKII 451

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              +  +     I+   DIF L +       ++      G   V NL  +I   +  SLE
Sbjct: 452 QQLYHHQ----LIKDVGDIFYLTKEDLLPLERM------GTKKVENLLSAIEHAKQNSLE 501

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             +F LGIRH+GA+ ++ LA+ + +     +               L+ +  +GD +AQ+
Sbjct: 502 HLLFGLGIRHLGAKASQILAEKFETMDRLLKVTEE----------ELVAIHDIGDKLAQS 551

Query: 612 IVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +V +  N      +E L    +  +   +   E     E +NK +V TG LQ++ R +A 
Sbjct: 552 VVTYLDNEDIKALIEKLKDKNVNMIYKGVKSSEIEGHPEFQNKTIVLTGKLQQMTRKEAT 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            ++   GA V++ +++ TD++I G++ GSKL KA+Q G +I +E QF+
Sbjct: 612 TWLEMQGAKVTSSVTKSTDLVIAGEDAGSKLSKAEQFGTEIWSESQFI 659


>gi|314936043|ref|ZP_07843392.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655860|gb|EFS19603.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis
           C80]
          Length = 667

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/711 (36%), Positives = 394/711 (55%), Gaps = 62/711 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I+    EL  L  + SY    YY    P + DSEYD L R    I +A P+L +++D  
Sbjct: 3   NIQNRVNELHDLLNQYSYE---YYVKDNPSVPDSEYDKLLRELIDIENAHPEL-KTDD-- 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GGE   S  KV H  P LSL   +N E+LR+F  RI     ++   ++ +  E 
Sbjct: 57  SPTVRVGGEAQSSFEKVNHETPMLSLGNAFNEEELRRFDERI-----REHIGNVEYMCEL 111

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P  +EVRGE Y
Sbjct: 112 KIDGLAVSLKYEDGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNVEVRGEAY 169

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + +  F+ LNDE      +P+ANPRNAA+G LR+L+P     R L+ F++ +   ++  A
Sbjct: 170 MPRRSFMRLNDEREKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFSA 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q + L ++  LGF  N+   +     G++ Y  +    R  L YDIDG+V KV++   
Sbjct: 230 TTQSDALDELDRLGFKTNHERARVEDIEGVLEYIKKWTKQREQLSYDIDGIVIKVNDLDQ 289

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q ++G   +SPRW I++KF  ++  T L DI++ IGRTG++TP A LEP+ + G  ++ A
Sbjct: 290 QDEMGFTQKSPRWAIAYKFPAEEVVTELKDIELSIGRTGVVTPTAILEPIRVAGTTVSRA 349

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED IK            RDIR+GD V+VK+AG++IP+VV  I++ R  DA+P+  P
Sbjct: 350 SLHNEDLIK-----------ERDIRIGDSVIVKKAGDIIPEVVRSIIDRRPNDAKPYHMP 398

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C   +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +
Sbjct: 399 THCPSCGHELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGNKII 451

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              +  +     I+   DIF L +       ++      G   V NL  +I   +  SLE
Sbjct: 452 QQLYHHQ----LIKDVGDIFYLTKEDLLPLERM------GTKKVENLLSAIEHAKQNSLE 501

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             +F LGIRH+GA+ ++ LA+ + +     +               L+ +  +GD +AQ+
Sbjct: 502 HLLFGLGIRHLGAKASQILAEKFETMDRLLKVTEE----------ELVAIHDIGDKLAQS 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRH 664
           +V +  N  +I A+   LK+   ++    K V SSEIE      NK +V TG LQ++ R 
Sbjct: 552 VVTYLDN-EDIKALIEKLKD--KNVNMTYKGVKSSEIEGHPEFQNKTIVLTGKLQQMTRK 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +A  ++   GA V++ +++ TD++I G++ GSKL KA+Q G +I +E QF+
Sbjct: 609 EATTWLEMQGAKVTSSVTKSTDLVIAGEDAGSKLSKAEQFGTEIWSESQFI 659


>gi|188585101|ref|YP_001916646.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|254781378|sp|B2A5W5|DNLJ_NATTJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|179349788|gb|ACB84058.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 663

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 249/704 (35%), Positives = 394/704 (55%), Gaps = 52/704 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K++ +L ++I YH+  YY    P I D E+DAL      +   +P+    + P+ P  +
Sbjct: 6   QKKVEALREKIEYHNHRYYVLDAPEISDQEFDALMNELIELEQTYPEY---QSPDSPSQR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE      +V+H IP LSLE   + + L  F  R+ +  QK D     +  E KIDG 
Sbjct: 63  VGGEPLDKFPRVSHEIPMLSLENAESQKGLLDFHQRVSKNTQKTDP---VYVAELKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++RYE+G  V  A RGDG +GED++  ++ + +IP  L L+ P  IE+RGE ++SK  
Sbjct: 120 ALSLRYEQGILVRGATRGDGTTGEDITPNVKTVRSIP--LKLSKPLDIEIRGEAFMSKAS 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E    G  P+ANPRNAA+G LR+L+P     R L+FF + +           Y 
Sbjct: 178 FERLNQEKAERGEDPFANPRNAAAGSLRQLDPKIPAKRDLDFFPYSVPYIRGENLDSHYS 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +++++ LGF +N  +R+  T   ++SY  E +  R+ LPY+IDG+V K+++++LQ+QLG
Sbjct: 238 AVKELKDLGFKINPYIRKFETMEEVISYCEEWQEKRTKLPYEIDGVVIKLNDYNLQQQLG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF  +QA +++ +I I +GRTG LTPV  LEPV I G+ +  A+LHNE
Sbjct: 298 ATSKNPRWAIAYKFPAEQAESQVNNIFINVGRTGALTPVVELEPVRIAGSTVKRASLHNE 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++            +D+R+GDRV++++AG++IP+VV +    R    QPF +P  CP+
Sbjct: 358 DILR-----------QKDVRIGDRVIIQKAGDIIPEVVKVKEEARTGHEQPFVYPESCPV 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S   R +N +     A  RC     C AQ  ER+ HF SRDA +IEGLG++ ++  + 
Sbjct: 407 CKSEAKR-INDE-----AILRCINP-GCPAQAKERIIHFSSRDAMDIEGLGEKVVEKLYS 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  ADI+ L + +      + N+ GFGD S  NL  +I + +     + ++ 
Sbjct: 460 H----GLIKDVADIYYLAKNE------LSNLEGFGDKSAENLLQAIEESKKNPFNKLLYG 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A+ LA  +       + ++N++    +D   L ++  +G  +A +IV F+
Sbjct: 510 LGIRLVGKRAAQLLAFEF-------EHLDNLMKAQIED---LTKINDIGPRMATSIVSFF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           Q       +  L K         E+N SS+  +  K +V TGT     R +  + +   G
Sbjct: 560 QLEHTHNLIRKLKKAGVNMKEPTEQNKSSDPSLTGKLVVITGTFDNYTRRELTDLIEAKG 619

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE---EQFL 715
           A V++ +S  TD ++VG NPGSK +KAQ LG+ I+ E   E FL
Sbjct: 620 AKVTSNVSSNTDFVLVGANPGSKRDKAQDLGLTIIEESDLEDFL 663


>gi|94263030|ref|ZP_01286849.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1]
 gi|93456573|gb|EAT06681.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1]
          Length = 678

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 242/697 (34%), Positives = 385/697 (55%), Gaps = 50/697 (7%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           I+YH+  YY    P + D EYD L R  + +   +P+L  ++ P+    ++GG       
Sbjct: 24  IAYHNHRYYVLDDPELSDGEYDRLFRELEELESRWPELVTADSPS---RRVGGAAAEQFA 80

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            V H++P LSLE  +   +L  F  R+ RF    DD  I +  EPK+DG  + + YE+G 
Sbjct: 81  PVRHAVPMLSLENAFAEAELYDFENRLRRFL-NLDDQPIAYYAEPKLDGLAVELVYEQGF 139

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
           F   + RGDG  GE++SA ++ I  IP R+     P  +++RGEV ++   F ALN++  
Sbjct: 140 FTLGSTRGDGLVGENISANLKTIDDIPIRLRGEQAPARLDIRGEVCLTVAGFTALNEQRA 199

Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
             G   +ANPRNAA+G LR+L+P     R L FF +G+     +    Q ++++ +  LG
Sbjct: 200 QNGESLFANPRNAAAGSLRQLDPAISAARPLEFFAYGVADADPLAVGSQQQVIELLAALG 259

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F              +++++ ++   RS LPY+IDG+V KV+E +LQK+LG + R+PRW 
Sbjct: 260 FKTIPHGHLCPDLAAVIAHFQQLAQRRSQLPYEIDGMVAKVNELALQKRLGSKTRTPRWA 319

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I+ KF   QA+TRLL ++ Q+GRTG +TPVARLEPV +GG  ++ ATLHNE  I+     
Sbjct: 320 IAAKFPAVQATTRLLAVEYQVGRTGAVTPVARLEPVTVGGVTVSRATLHNEAEIR----- 374

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  +D+R+ D VLV+RAGEVIP+VV  +  +R+   +  + P+ CP C S+++R  
Sbjct: 375 ------RKDLRLEDTVLVQRAGEVIPEVVKPLAEKRNGRQREITLPTHCPECGSQLIR-- 426

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
            P    ++   RC     C AQ+L  L HF  +   +IEGLG++ L+    +        
Sbjct: 427 -PAAEVVL---RCPNHRHCPAQRLRALIHFCGKAGLDIEGLGQKVLEQLTAA---GLVGD 479

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
           IP DIF L+        ++  + G+G+    N+  ++N+RR + L R + +LGIRH+G  
Sbjct: 480 IP-DIFRLR------AAQLAPLPGWGEKKAANVIAAVNRRRRVELGRLLAALGIRHIGEV 532

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A+ LA+ + +       +  ++A   +D+L    +  +G   A A+V ++  P N   +
Sbjct: 533 TAQLLARRFGT-------LEGLLAAGEEDFLD---IEGIGPQAAAALVTYFAAPGNREIL 582

Query: 626 ----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
               E L  E+ P  G  +   S  + ++  +FTGTL    R +A+  V +LG  V+  L
Sbjct: 583 RQLQEELGLEIQPEGGPEQ---SQPLGDRVFLFTGTLSNWSRSEAKARVKELGGEVATSL 639

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +R+   ++ G  PGSKL KA+++G+ I++EEQF  LL
Sbjct: 640 NRRVTHLVCGSKPGSKLPKAREMGLTILDEEQFRRLL 676


>gi|307609752|emb|CBW99264.1| DNA ligase [Legionella pneumophila 130b]
          Length = 650

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 242/685 (35%), Positives = 371/685 (54%), Gaps = 48/685 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P+ P  +
Sbjct: 7   KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           + G  + +   V H  P LSL  ++  ++L+ FI R      + +   + F  EPK+DG 
Sbjct: 64  VSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDEPN-QQLVFACEPKLDGL 122

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            + + YE G   +AA RGDG  GE+++A I+ I ++P R+   N P++IEVRGEVYI K 
Sbjct: 123 AVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIPKA 182

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAKGQ 254
           DF A N     +G K +ANPRNAA+G LR+LNP     R L  + +G+G   +       
Sbjct: 183 DFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISANRPLAIYCYGIGAFEDYKLPNSH 242

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D  SLQ+Q
Sbjct: 243 LEQLNLLKEFGFRVSPETRRAVGIEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQ 302

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  ++NATLH
Sbjct: 303 LGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLH 362

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+    P  C
Sbjct: 363 NFDEIT-----------RKDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPKNC 411

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG   +D  
Sbjct: 412 PVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQL 465

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
               D      + AD++ L  +   S  ++      G+ S  NL  ++ K +  +  RF+
Sbjct: 466 V---DEGIVHHL-ADLYELDLQTLASLPRM------GEKSAKNLLSALEKSKKTTFNRFL 515

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++LGIR +G   AR LA++Y   +   A  I  ++  N+           +G + A  +V
Sbjct: 516 YALGIREIGEVGARVLAEHYCDVEGLKAATIEELMTLND-----------IGPVAASHVV 564

Query: 614 EFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+    N+  ++ LLK     P   + + N  +    K +V TGTL  + R +A+  + 
Sbjct: 565 HFFAQAHNLEVIDRLLKLGIHWPKSEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKAKLL 624

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGS 696
            LGA VS  +S KTD ++ G   GS
Sbjct: 625 ALGAKVSGSVSSKTDYVVAGSEAGS 649


>gi|228919228|ref|ZP_04082598.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840335|gb|EEM85606.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 669

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 394/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R    + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGKEEEYR 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|225851368|ref|YP_002731602.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
 gi|254781385|sp|C0QSF6|DNLJ_PERMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225645574|gb|ACO03760.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
          Length = 714

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 269/725 (37%), Positives = 391/725 (53%), Gaps = 68/725 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A   +  L   I YHD  YY  + P+I D EYD L      I   FP+L     P+ P
Sbjct: 29  EDAEAIIEDLRDVIRYHDWRYYVLANPVISDYEYDQLFHLLKDIESRFPELI---TPDSP 85

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++  E+     +V H  P LSL+  +N EDLR+F  R+    +    + I + +EPK 
Sbjct: 86  TQRVPSELTKEFPQVKHLAPMLSLDNSYNEEDLREFDRRVR---EAVGIDIIEYAVEPKF 142

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192
           DG  I++ YEK  FV  A RGDG  GED++  IR I T+P     ++  I  IE+RGEV 
Sbjct: 143 DGAGISLVYEKDMFVRGATRGDGVVGEDITPNIRVIKTVPLSAEFSVYGIDRIEIRGEVL 202

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           I+K  F  +N + +  G  P ANPRNAA+G LR  +P ++  R L  FV+ +  T  +  
Sbjct: 203 INKEKFKEINHQRLEEGLPPLANPRNAAAGSLRLQDPKEVAKRGLEAFVYQI--TYAVDK 260

Query: 252 KG----------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYD 298
            G           Y+ ++ +  LGF   +  ++     GI   + Y  E +  R   PY+
Sbjct: 261 DGNNLLGNKLRYHYDSIKILYELGF--KSPYKEIKVCRGIDEVIDYCREWERKRDDYPYE 318

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV++ SL  +LG  +  PRW I+ KF  +QA+T+++ +  Q+GRTG +TPVA+L
Sbjct: 319 IDGMVIKVNDISLYDRLGVTSHHPRWAIAFKFRARQATTKIIKVVFQVGRTGAVTPVAKL 378

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV IGG  +++ +L NED+IK            +DIRVGD VL++RAG+VIP VV ++ 
Sbjct: 379 EPVEIGGVTVSSVSLINEDFIK-----------EKDIRVGDLVLIERAGDVIPYVVKVVT 427

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R    +P  FP  CP C S +V+          A  RC   + C AQ +ER+ +F S+
Sbjct: 428 EARTGKEKPIQFPKECPSCGSPLVKPAGE------AVWRCI-NINCPAQVVERIIYFASK 480

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           DA +I GLG+  +  F++     F   IP DI+ L         KI  + GFG  SV NL
Sbjct: 481 DAMDIRGLGEANIRKFYQL---GFLRSIP-DIYRL------PYDKIIQLEGFGQKSVENL 530

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL-- 596
             +I + +N  + R I  LGIR VG   AR+L          A+ IN +   +  DW   
Sbjct: 531 KKAIEESKNRPINRLITGLGIRFVGKVTARTL----------AENINCV--EDLKDWSVE 578

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            L R+P VG ++A +I +F+ NP NI  ++ L +    +    E+ V +  E K  VFTG
Sbjct: 579 DLERLPDVGYVVAHSIYDFFHNPDNIKMIQELKRLGVQTCKEKEEVVENIFEGKTFVFTG 638

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL    R  AQE V +LG   S+ +SRKT  ++VG+NPGSK  KA  LGV+I++E+QF+ 
Sbjct: 639 TLSCCSREIAQEIVERLGGHASSSVSRKTSYVVVGENPGSKYRKALSLGVQILDEKQFIE 698

Query: 717 LLQQY 721
           +++ +
Sbjct: 699 MIKDH 703


>gi|257387145|ref|YP_003176918.1| NAD-dependent DNA ligase LigA [Halomicrobium mukohataei DSM 12286]
 gi|257169452|gb|ACV47211.1| DNA ligase, NAD-dependent [Halomicrobium mukohataei DSM 12286]
          Length = 700

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/719 (35%), Positives = 385/719 (53%), Gaps = 52/719 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P+E  S ++AR++   L + I YHD  YY  + P+I D  YDAL  R +A+  AF D
Sbjct: 22  EFEPVEDFSDDEAREQAQRLREAIRYHDHRYYVLADPVIGDRAYDALFARLEALEDAF-D 80

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDD 123
           L R      P  ++GGE    L  V H  P  S+++     ++R+F  R+  R      D
Sbjct: 81  LDRE---ASPTQRVGGEPLDELASVEHVAPMGSIDQGGEASEVREFDRRVRDRLSDAGYD 137

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
             I +  EPK DG  + I YE G+F  AA RGDG  GEDV+  +R I ++P+ L  + P+
Sbjct: 138 GEIEYFCEPKFDGLSVEIVYEDGQFQRAATRGDGAVGEDVTENVRTIASVPQRLRGDYPD 197

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            + VRGEVY+ ++ F A N E I  G  P+ANPRNAA+G LR+L+P+    R L+ F+ G
Sbjct: 198 YLAVRGEVYMPRDAFTAYNSERIERGEDPFANPRNAAAGTLRQLDPSVTAERPLSIFLFG 257

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +   S  F      + ++    G  V +     +     + Y +     R  L Y+IDG+
Sbjct: 258 VLDASVDF-DSHGALHERFPEWGLRVCDRTTVVDDIDAAIDYRDRQLDARDDLDYEIDGV 316

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD+    + LG  +R+PRW  ++KF  ++  T L DI +Q+GRTG LTPVA L+PV 
Sbjct: 317 VIKVDDRRACELLGATSRAPRWAFAYKFPARKERTTLRDIAVQVGRTGRLTPVALLDPVE 376

Query: 363 IGGALITNATLHNEDYIK--GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           +GG  ++ A+LHN   I+  G+DA             GD V +KRAG+VIP VV+++ + 
Sbjct: 377 VGGVTVSRASLHNPAQIEELGVDA-------------GDTVRIKRAGDVIPDVVEVVESS 423

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
                  FSFP  CP+C+S V RD     G +     CTGGLAC AQ+   ++H+ SRDA
Sbjct: 424 GE---ATFSFPDRCPVCESAVERD-----GPMAF---CTGGLACPAQRERAIEHYASRDA 472

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IEG+G++ +     +E     +  PAD++ L      +  ++  + G+G  S  NL  
Sbjct: 473 LDIEGVGEKAVAKLLDAE----LVESPADLYDL------TVDELAALSGWGQRSAENLVA 522

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            ++  R   L  F+ +LGI  VG   AR+LA+ + S++   +      A    D  +   
Sbjct: 523 EVDASREPPLANFLVALGIHDVGTVTARNLAREFGSFEAIRE------AGAAGDTDAFEA 576

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           V  VG ++A++I EF++  RN   ++ LL  V P     E      ++ +  VFTG+L  
Sbjct: 577 VDDVGPVVAESICEFFRGERNEAVLDDLLDHVDPQPADTE--TGDALDGQTFVFTGSLAG 634

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             R +AQ+ V   G   ++ +S  TD ++VGDNPG SK + A+  GV+ +++E F  LL
Sbjct: 635 YTRSEAQDLVEAHGGSATSSVSGNTDYLVVGDNPGQSKRDDAEAEGVETIDQESFEELL 693


>gi|254796855|ref|YP_003081692.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois]
 gi|254590064|gb|ACT69426.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois]
          Length = 670

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/710 (36%), Positives = 400/710 (56%), Gaps = 53/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A+KE+  L +++  H+  YYQ   P I D+EYD++K R   +  A P L       G  
Sbjct: 2   KAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKGRYLKLLEANPSL-------GFP 54

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             IG   +    KV H  P LSL  I++ E+L ++I R  RF   K  N + F  EPKID
Sbjct: 55  VVIGYPASEKFQKVKHLSPMLSLRNIFSEEELVEYIERTKRFLNLK--NELEFLCEPKID 112

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G   + RY  GK +  A RGDG  GE++   ++ I   P +  +++P+++EVRGEV++  
Sbjct: 113 GVSFSARYINGKLLSCATRGDGKIGENIIDNMKVINGFP-IEIVDVPDLLEVRGEVFLDH 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG 253
           + F  L         + ++NPRNAA+G LR+LNP +IT  R L +F + + K   I  + 
Sbjct: 172 DTFQTL---------EGFSNPRNAAAGSLRQLNP-EITKERNLQYFAYSISKIDGI--EH 219

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q ++L  +   GF  N     ++    I+S+Y+ +   RS + YDIDGLVYKV+   L  
Sbjct: 220 QEDVLHFLSERGFMTNPLRLASSKVPEIMSFYDSVYRGRSQIKYDIDGLVYKVNNLKLHA 279

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  + +PRW I+HKF   +  T L  I + +GRTGI+TPVA L+P+ IGG +I+ A+L
Sbjct: 280 RLGTLSDAPRWAIAHKFPSHRGKTILEKIKLSVGRTGIITPVAHLKPITIGGVVISRASL 339

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           +NED +             +DIR GD V V+RAG+VIPKV+++ ++ R  + + F FP  
Sbjct: 340 YNEDEL-----------ARKDIREGDLVTVERAGDVIPKVLEVDISYR-TNQERFIFPDK 387

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S ++R  N       AA RC     C+ Q ++++KH VS  AF+I+G+G   + F
Sbjct: 388 CPSCSSTLIRKNNE------AAIRCNNRKKCTEQVIQQIKHLVSAQAFDIDGIGTSHISF 441

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F + E     I  PADIF L + +     +I+   G+G+ SV N+  SI K R ISLE+F
Sbjct: 442 FIEKE----FISEPADIFCLDKHRD----EIKKYDGWGEKSVDNILTSIEKSRKISLEKF 493

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IFSLGI++VG + A  LA+ + S+ N+  ++ +I+  +      +  +  +G  + ++++
Sbjct: 494 IFSLGIKNVGEKTAYMLAQQFKSFANWFDKM-SILKDDTQTENEIRNLDGMGSCVCESLL 552

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +F+ +P N   V++L   V   I  H  ++   +  KK VFTGTL  I R +A+E V + 
Sbjct: 553 DFFSDPDNCNMVKSLSNHV--MITDHAISIGGPLSGKKFVFTGTLLSITREEAKEIVKKA 610

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           G +V   +S++ D ++ G+  GSKL KA +LG+ I+ E+  +      NT
Sbjct: 611 GGIVLNSVSKQVDYVVAGEKAGSKLVKANELGIAIIEEKTLIEFTTGNNT 660


>gi|227551668|ref|ZP_03981717.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330]
 gi|293377659|ref|ZP_06623848.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1]
 gi|227179231|gb|EEI60203.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330]
 gi|292643659|gb|EFF61780.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1]
          Length = 679

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/714 (34%), Positives = 399/714 (55%), Gaps = 63/714 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S   
Sbjct: 6   MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+    QK     + +  E
Sbjct: 63  DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  + L  P  IEVRGE 
Sbjct: 119 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+ + IT  R L+ F++ +     +
Sbjct: 177 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGSM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +   D      + AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 458 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSR----------SDYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660
            ++V ++ N      V  L+ E+  +    E         + V S  + K +V TG L +
Sbjct: 558 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTR 613

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           + R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q 
Sbjct: 614 LTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 667


>gi|261207462|ref|ZP_05922148.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6]
 gi|289565873|ref|ZP_06446314.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF]
 gi|294618097|ref|ZP_06697694.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679]
 gi|260078353|gb|EEW66058.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6]
 gi|289162333|gb|EFD10192.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF]
 gi|291595669|gb|EFF26965.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679]
          Length = 679

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 247/714 (34%), Positives = 398/714 (55%), Gaps = 63/714 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S   
Sbjct: 6   MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+    QK     + +  E
Sbjct: 63  DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  + L  P  IEVRGE 
Sbjct: 119 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+ + IT  R L+ F++ +     +
Sbjct: 177 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EF
Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +   D      + AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 458 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSK----------SDYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660
            ++V ++ N      V  L+ E+  +    E         + V S  + K +V TG L +
Sbjct: 558 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTR 613

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q 
Sbjct: 614 FTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 667


>gi|257895732|ref|ZP_05675385.1| NAD-dependent DNA ligase [Enterococcus faecium Com12]
 gi|257832297|gb|EEV58718.1| NAD-dependent DNA ligase [Enterococcus faecium Com12]
          Length = 678

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/714 (34%), Positives = 399/714 (55%), Gaps = 63/714 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S   
Sbjct: 5   MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 61

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+    QK     + +  E
Sbjct: 62  DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  + L  P  IEVRGE 
Sbjct: 118 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+ + IT  R L+ F++ +     +
Sbjct: 176 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGSM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 404 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +   D      + AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 457 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSR----------SDYESIIALDTIGDIIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660
            ++V ++ N      V  L+ E+  +    E         + V S  + K +V TG L +
Sbjct: 557 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTR 612

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           + R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q 
Sbjct: 613 LTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 666


>gi|51893963|ref|YP_076654.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863]
 gi|81388077|sp|Q67KI8|DNLJ_SYMTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51857652|dbj|BAD41810.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863]
          Length = 673

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 248/703 (35%), Positives = 383/703 (54%), Gaps = 47/703 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L + I +H+  YY  ++P I D+ +D L +    +  AFPDL R   P+ P  
Sbjct: 6   AERRIPELIETIRHHEYLYYVKNEPEISDAAFDELMQELKQLEEAFPDLRR---PDSPTQ 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG       KV H  P  SL+  ++  DLR F  R+    +      + +  E KIDG
Sbjct: 63  RVGGATAPDFAKVPHQPPMYSLDNAFSEADLRDFDRRVR---EGLGGEPVSYVCELKIDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYI 193
             I++RYE G FV  A RGDG +GEDV+  +R I +IP  L      +P  + VRGEVY+
Sbjct: 120 LSISLRYEDGLFVQGATRGDGETGEDVTENLRTIGSIPLRLDGTEAPVPPRLIVRGEVYM 179

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
           +K     LN  + A G+    NPRNAA+G LR+ +P     R L+ F++ +     +   
Sbjct: 180 TKQVLEELNAALAAEGKPLLQNPRNAAAGGLRQKDPRKTRERRLDAFLYQVVDAEALGIA 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +  LQ+++   F VN     A+T   ++ +    ++ R  LPY+IDGLV KV++ + Q
Sbjct: 240 DHWSALQRLQAWRFKVNPHRHLAHTIDEVLDWVAGWQARRHELPYEIDGLVIKVNDLAQQ 299

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  ++ PRW I++KF  ++  T ++ I +++GRTG++TP A L PV I G  +  AT
Sbjct: 300 RRLGFTSKFPRWAIAYKFPAEERETTVVGISLEVGRTGVVTPSADLAPVRIAGTTVKRAT 359

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNEDYI+            +DIRVGD V+V++AGE+IP+VV ++  +R PDAQP++FP 
Sbjct: 360 LHNEDYIR-----------EKDIRVGDTVIVRKAGEIIPEVVRVVPEKRPPDAQPWTFPK 408

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +VR      G+  AA RCT  L C AQQ   + HF SRDA NIEGLG+  + 
Sbjct: 409 TCPACGAELVR----IEGE--AATRCTNNL-CPAQQYRAILHFASRDAMNIEGLGEALVQ 461

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      I   AD++ L  ++  +  ++E +   G+ SV NL  +I+  R   L R
Sbjct: 462 SLLDH----GLIEDAADLYRLHEKRD-ALIRLERM---GEKSVDNLLAAIDATRQNPLHR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIRHVG   AR LA ++ S +   Q   +           L  +P +G  IA+++
Sbjct: 514 LIFALGIRHVGERAARLLADHFGSMEAIEQAGLD----------ELTAIPGLGPKIAESV 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             ++ +PR+   +  L       +G  +       +    +V TGTL +  R + +E + 
Sbjct: 564 KNYFASPRSHQLLAKLRAAGVNMVGEKKAGPAEGPLAGMTVVVTGTLVRWSRKEIEELIQ 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           QLG   +  +SRKT  ++ G+  GSKL+KAQ+LG+ ++ E++F
Sbjct: 624 QLGGKAAGSVSRKTSFVVAGEAAGSKLQKAQELGIPVLTEDEF 666


>gi|206967609|ref|ZP_03228565.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134]
 gi|228950848|ref|ZP_04112971.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|229068048|ref|ZP_04201356.1| DNA ligase [Bacillus cereus F65185]
 gi|229077651|ref|ZP_04210281.1| DNA ligase [Bacillus cereus Rock4-2]
 gi|229176884|ref|ZP_04304280.1| DNA ligase [Bacillus cereus 172560W]
 gi|206736529|gb|EDZ53676.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134]
 gi|228606557|gb|EEK63982.1| DNA ligase [Bacillus cereus 172560W]
 gi|228705592|gb|EEL57948.1| DNA ligase [Bacillus cereus Rock4-2]
 gi|228715056|gb|EEL66923.1| DNA ligase [Bacillus cereus F65185]
 gi|228808777|gb|EEM55273.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 669

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 394/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|256617609|ref|ZP_05474455.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200]
 gi|257089149|ref|ZP_05583510.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188]
 gi|312904259|ref|ZP_07763421.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635]
 gi|256597136|gb|EEU16312.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200]
 gi|256997961|gb|EEU84481.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188]
 gi|310632355|gb|EFQ15638.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635]
 gi|315578805|gb|EFU90996.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0630]
          Length = 676

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMV 668


>gi|329767007|ref|ZP_08258535.1| DNA ligase [Gemella haemolysans M341]
 gi|328837732|gb|EGF87357.1| DNA ligase [Gemella haemolysans M341]
          Length = 663

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 249/711 (35%), Positives = 399/711 (56%), Gaps = 54/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++Q ++++S L   ++ +   YY    P I D+EYD L ++ + +    P+       N 
Sbjct: 1   MKQVQEKISKLVSLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEENHPEYILE---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +     K+TH +P LSL   ++ EDLR F  RI +      D+S+ +  E K
Sbjct: 58  PTQRVGDRVLDEFEKITHKVPMLSLSNTFSTEDLRDFDARISKLVP---DHSVEYICELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+I+YE G+ V AA RGDG  GEDV+  I+ I +IP+VL  N     EVRGEVY+
Sbjct: 115 IDGLAISIKYEDGRLVSAATRGDGSIGEDVTENIKTIFSIPKVLKDN--RTFEVRGEVYL 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251
            +  F  LN E  +     +ANPRNAA+G LR+L+ + IT  R L+ F++ +     I +
Sbjct: 173 PRKSFELLNSERESNNEVLFANPRNAAAGSLRQLD-SKITAKRRLSAFIYSIVGDDSIVS 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   L   +    PVN   +       ++ Y N     +  LPYDIDG+V KV+ +S 
Sbjct: 232 --QENALNTAKEYDLPVNPNFKLCKNIDEVIDYINYWTEHKKDLPYDIDGIVIKVNSYST 289

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+++G   +SPRW  ++KF E++ +T+LLD+++ +GRTGI+TPVA L+P+ I G+ ++ A
Sbjct: 290 QEKVGYTQKSPRWATAYKFPEEELATKLLDVELSVGRTGIITPVAILDPIVISGSTVSKA 349

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN+D I+ L           DI + D V+VK+AGE+IPKVV ++   R   +  +  P
Sbjct: 350 SLHNKDIIEEL-----------DIHIDDMVVVKKAGEIIPKVVRVVRELRTESSTKYVMP 398

Query: 432 SFCPIC-QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           + CP C Q    ++ +P T       RC     C  Q + R+ HF SRDA NIEGLG + 
Sbjct: 399 NTCPSCGQQTYTKENDPFT-------RCKNP-DCPDQNIRRIIHFASRDALNIEGLGDKV 450

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   ++    A +I    D+F+L+R +  S  ++      G+ S  NL ++I   +  SL
Sbjct: 451 VATLYEKGIIAHTI----DLFSLEREKLISLDRM------GEKSADNLLNAIENSKKSSL 500

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ IF+LGI +VG +  + LA+ YL+  N            N     L+ +  VG I A+
Sbjct: 501 DKVIFALGILNVGKKAGKILAEKYLNLSNLM----------NATLDELVNLDDVGQITAE 550

Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I+++  +  NI  +  L+K  ++P     E N  +    K +V TG L ++ R++A+EY
Sbjct: 551 SILDYLSDENNIKFINDLIKVGMNPQYEIQEVNTDNIFAGKTVVLTGKLVELTRNEAKEY 610

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + + GA V+  ++ KTD++I G+  GSKL KA+QLG+K++NEE+F  ++++
Sbjct: 611 LEKYGAKVTGSVTSKTDLVIAGEKAGSKLAKAEQLGIKVINEEEFANMVRE 661


>gi|329770498|ref|ZP_08261876.1| DNA ligase [Gemella sanguinis M325]
 gi|328836247|gb|EGF85916.1| DNA ligase [Gemella sanguinis M325]
          Length = 666

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 251/715 (35%), Positives = 414/715 (57%), Gaps = 62/715 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ ++E+  L + ++ +   YY    P I D+EYD L ++ + +   +P+L +    N 
Sbjct: 1   MKEIKEEIYKLVKLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEKEYPELIQE---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +     KVTH +P LSL   ++ EDLR F  RI +    +    I +  E K
Sbjct: 58  PTQRVGDVVLSEFEKVTHKVPMLSLSNTFSTEDLRDFDNRIKKVVANR---KIEYICELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+I Y  GK + AA RGDG  GE+V+  I+ I +IP+VL  N  +  EVRGEVY+
Sbjct: 115 IDGLAISINYVNGKLISAATRGDGTVGEEVTDNIKTIFSIPKVLKDN--KTFEVRGEVYL 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251
            K  F  LN+E        +ANPRNAA+G LR+L+ + IT  R L+ F++ +   + I  
Sbjct: 173 PKKSFNILNEERKENNEVLFANPRNAAAGSLRQLD-SKITAQRRLSAFIYSVVGDNTI-- 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q + L+       PVNN  +       +++Y       R  LPY+IDG+V KV+ +SL
Sbjct: 230 ESQLQALKTAEEYELPVNNNYKLCKNIDEVINYIEYWDINRKNLPYEIDGIVIKVNSYSL 289

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+++G   +SPRW  + KF E++ +T+LLD+++ +GRTGI+TPVA+L+P+ I G+ ++ A
Sbjct: 290 QEEIGYTQKSPRWATAFKFPEEELATKLLDVELSVGRTGIVTPVAQLDPIVISGSTVSKA 349

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN+D I  L           DI +GD V+VK+AGE+IPKVV ++   R  +++ +  P
Sbjct: 350 SLHNKDVIDEL-----------DIHIGDMVIVKKAGEIIPKVVRVLKELRLENSEKYIMP 398

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S +V   + K    +   RC     C  Q + ++ HF SRDA NIEGLG + +
Sbjct: 399 NRCPSCNSELV---SKKDDPFI---RCVNP-ECPEQNIRKIIHFASRDALNIEGLGDKVV 451

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              ++    + +I    D+F+L+R       K+ ++   G+ SV NL  +I   +N SL+
Sbjct: 452 ATLYEQGIISHTI----DLFSLERE------KLIDLDRMGEKSVDNLLKAIENSKNSSLD 501

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + I++LGI +VG + A+ LA+ YL+       +  ++    D+   LI +P +G I A++
Sbjct: 502 KVIYALGILNVGKKAAKILAEKYLN-------LTTLMTATVDE---LINLPDIGLITAES 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHK 665
           +++F  N  NI  +  L+     SIG + +    +IE+      K +V TG L ++ R++
Sbjct: 552 VIDFLSNEINIKFINDLI-----SIGMNPQYKVQKIEDDNIFSGKTIVLTGKLVELTRNE 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+EY+ +LGA V+  ++ KTD+++ G+  GSKL KA+QLG+++++EE+F+ +L +
Sbjct: 607 AKEYLEKLGAKVTGSVTTKTDLVLAGEKAGSKLAKAEQLGIQVISEEEFISMLGE 661


>gi|227517688|ref|ZP_03947737.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104]
 gi|257083650|ref|ZP_05578011.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1]
 gi|227074843|gb|EEI12806.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104]
 gi|256991680|gb|EEU78982.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1]
 gi|315146961|gb|EFT90977.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4244]
          Length = 676

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668


>gi|257884412|ref|ZP_05664065.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501]
 gi|257898303|ref|ZP_05677956.1| NAD-dependent DNA ligase [Enterococcus faecium Com15]
 gi|257820250|gb|EEV47398.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501]
 gi|257836215|gb|EEV61289.1| NAD-dependent DNA ligase [Enterococcus faecium Com15]
          Length = 678

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/714 (34%), Positives = 399/714 (55%), Gaps = 63/714 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S   
Sbjct: 5   MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 61

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+    QK     + +  E
Sbjct: 62  DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  + L  P  IEVRGE 
Sbjct: 118 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+ + IT  R L+ F++ +     +
Sbjct: 176 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 404 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +   D      + AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 457 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSR----------SDYESIIALDTIGDIIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660
            ++V ++ N      V  L+ E+  +    E         + V S  + K +V TG L +
Sbjct: 557 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTR 612

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           + R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q 
Sbjct: 613 LTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 666


>gi|328954073|ref|YP_004371407.1| DNA ligase [Desulfobacca acetoxidans DSM 11109]
 gi|328454397|gb|AEB10226.1| DNA ligase [Desulfobacca acetoxidans DSM 11109]
          Length = 676

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 399/712 (56%), Gaps = 51/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE A +  + L  +I YHD  YY    P I D+EYD L R  + +   +P+L     P
Sbjct: 7   ITIEIAARA-ARLRDQIHYHDYRYYVLDDPEISDAEYDLLFRELERLEEEYPELV---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG        VTH  P LSLE  ++  ++++F  R+ RF  ++ +    + LE
Sbjct: 63  DSPTQRVGGGPAEKFESVTHRQPMLSLENAFSEGEVQEFEPRLKRFLHQQAE--FDYVLE 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
           PK+DG  + + YE G     A RGDGH GE+V+  +R I TIP VL   +   P  +EVR
Sbjct: 121 PKMDGVAVNLTYEDGLLAIGATRGDGHRGENVTQNLRTIKTIPLVLRRETTPAPAFLEVR 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVYI   +F  LN    A G+  +ANPRNAA+G LR+L+P     R L  + +G+G+ +
Sbjct: 181 GEVYIELAEFKKLNAAREAQGQPAFANPRNAAAGSLRQLDPAVTAGRPLKIYCYGIGEVA 240

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  +E++Q ++  G  VN  V +       V+Y++ ++ +R  LPY+IDG+V KVD
Sbjct: 241 GREFSSHWEVMQTLKTWGLRVNPYVDRCQGIEAAVAYHHRLEGLRHGLPYEIDGVVIKVD 300

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ +LG ++RSPRW +++KFA  QA+T++  I +Q+GRTG +TP A + PV +GG  
Sbjct: 301 SLELQTRLGIKSRSPRWALAYKFAATQATTQVRKIIVQVGRTGAVTPTAIMAPVEVGGVT 360

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED         +V R  +D+R GD VL++RAG+VIP+VV +I + R    +P
Sbjct: 361 VSRATLHNED---------EVAR--KDVREGDWVLIQRAGDVIPEVVKVITSRRTGREKP 409

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP+C + +VR          A  RC     CSAQ    ++HF S+ A +I+GLG
Sbjct: 410 FKMPERCPVCDTPLVRPQGE------AVTRCPNP-DCSAQLKRAIRHFASKGAMDIDGLG 462

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++             +  D+  L R Q +    +E    F + S  N+  +I   + 
Sbjct: 463 EKIIEQLIDQG-------LVQDVADLYRLQASDLLPLER---FAEKSAQNIVQAIAGSKK 512

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFI++LGIR+VG   A  LA+++       Q +N + A   +D   L+ +  +G  
Sbjct: 513 PSLGRFIYALGIRYVGEATANLLARHF-------QTLNALKAAAVED---LLLIEGIGPQ 562

Query: 608 IAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +A +I +++QNP+N   +  LL+  + P      + +++ +  +  VFTG LQ++ R +A
Sbjct: 563 VAASIRDYFQNPKNQALLAKLLQANLQPQAA--TQVLTTPLAGQTFVFTGRLQQLSRDEA 620

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  VT  G  VS+ +S KTD ++VG +PG+K  +A +LG+ I++E  F  L+
Sbjct: 621 KALVTAQGGKVSSSVSAKTDYLVVGKDPGTKYAQALELGLTILDEAGFAQLI 672


>gi|293571852|ref|ZP_06682868.1| DNA ligase, NAD-dependent [Enterococcus faecium E980]
 gi|291608106|gb|EFF37412.1| DNA ligase, NAD-dependent [Enterococcus faecium E980]
          Length = 679

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/714 (34%), Positives = 399/714 (55%), Gaps = 63/714 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S   
Sbjct: 6   MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+    QK     + +  E
Sbjct: 63  DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  + L  P  IEVRGE 
Sbjct: 119 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+ + IT  R L+ F++ +     +
Sbjct: 177 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVMDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +   D      + AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 458 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSR----------SDYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660
            ++V ++ N      V  L+ E+  +    E         + V S  + K +V TG L +
Sbjct: 558 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTR 613

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           + R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q 
Sbjct: 614 LTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 667


>gi|229188563|ref|ZP_04315602.1| DNA ligase [Bacillus cereus ATCC 10876]
 gi|228594752|gb|EEK52532.1| DNA ligase [Bacillus cereus ATCC 10876]
          Length = 669

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 394/712 (55%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+   SED 
Sbjct: 1   MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  
Sbjct: 59  -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE
Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E 
Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ 
Sbjct: 232 TISSHGESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++ 
Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + + 
Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F ++     IR  AD++ L + Q     +      FG+ S TNL  +I   +  S
Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G+ +A
Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663
           Q++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+ + R
Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664


>gi|116873191|ref|YP_849972.1| NAD-dependent DNA ligase LigA [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466434|sp|A0AJL1|DNLJ_LISW6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116742069|emb|CAK21193.1| DNA ligase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 670

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 258/711 (36%), Positives = 384/711 (54%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P+ P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PDSPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N +DL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFTKVAHDTPMLSLANAFNRDDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIPMKLQKDFS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+      E
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVTTHSE 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N    + +Y +E    R+ L YDIDG+V K+++   Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNNLEEVYAYIDEWTEKRAELAYDIDGIVLKLNDLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CGSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 E----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKMADKETLTSIND----------IGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL+E+  +       G   +++S E      K +V TG L+K+ R+ A+
Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|225620892|ref|YP_002722150.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
 gi|254781267|sp|C0QVE5|DNLJ_BRAHW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225215712|gb|ACN84446.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
          Length = 663

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/708 (34%), Positives = 397/708 (56%), Gaps = 50/708 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE+A++ +  L + I+YH+  YY    P I D EYD L R  + +   FP+L +    
Sbjct: 1   MNIEEAKQRIEQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P NK+GG +     K  H I   SL  + N E+  +F  R+ +   +   + I +T+E
Sbjct: 58  DSPTNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLEFDNRMQKELNQ---SKIKYTVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + YEKGK   A+ RGDG  GE+V+  ++ +  +P+  S+   + + VRGE 
Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMSNVPK--SIKEKKKLIVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            I+K DF ALN E   +   P+AN RNAASG LR+L+  +   R L FF + +    +  
Sbjct: 173 LITKKDFEALNKEREELEEIPFANARNAASGGLRQLDSAESKKRRLKFFAYQIANYKDFD 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              +Y+ ++ +  LGF V  GV        ++  Y +++  RS + Y+IDGLV KVD+  
Sbjct: 233 LTNEYKSMEFLSELGFTVE-GVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVK 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +R+PR+ ++ KF  ++  T L +I++Q+GRTG LTPVA+LEPV +GG  ++N
Sbjct: 292 HQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN + IK            +DIR+GD V+V R+G+VIPK+  +++ +R  D++PF F
Sbjct: 352 VTLHNPNEIK-----------SKDIRIGDTVVVIRSGDVIPKITRVVLEKRTADSKPFEF 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C      D     G ++   RC     C ++    +++FVS+ A N+E +GK+ 
Sbjct: 401 PKKCPVCGG----DTAVTDGDVIV--RCINE-ECPSKITRYIEYFVSKPAMNMERIGKEW 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI-ENILGFGDVSVTNLYDSINKRRNIS 549
           +  F KS      ++ PAD++ + R       ++ E + G+       + +SI   +N +
Sbjct: 454 IAVFTKSG----LVKTPADLYKITRDDLFKFERMGEKLAGY-------MLESIENSKNTT 502

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L+RFI++LGIR VG   A  LAKY+ S +NF +          DD   L  +  +G+I A
Sbjct: 503 LKRFIYALGIRQVGETTADLLAKYFTSIENFKK-------ATIDD---LQNIEGIGEISA 552

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++I +F  N + +  ++ LL      +      V S +  K +V TG+++   R+ A+E 
Sbjct: 553 KSIYDFLHNEKTLKLIDDLLASGVNPVFEKVVTVESPLTGKNVVITGSIEGFTRNSAKEA 612

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             +LGA V + +S+ T+I+IVG+  GSKL+KAQ LGV+IM  ++F+ L
Sbjct: 613 AERLGATVQSAVSKNTNILIVGEKAGSKLKKAQDLGVEIMEADEFIKL 660


>gi|330813743|ref|YP_004357982.1| DNA ligase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486838|gb|AEA81243.1| DNA ligase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 672

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 249/722 (34%), Positives = 405/722 (56%), Gaps = 67/722 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SI+  +K+L  L Q    +D  YY+   P I D EYD +K++                  
Sbjct: 4   SIDDYKKKLKLLNQ----YDHNYYETDSPKITDGEYDEIKKKLLEFEKKNSQYKFVS--- 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
              NK+G   +    KV H+   LSL   ++IED+  F  +I  +   +    I    EP
Sbjct: 57  ---NKVGFAPSKKFSKVKHTEKMLSLGNAFSIEDMNGFYKKIKNYLNYEAGQDIILVAEP 113

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR-VLSLNIPEIIEVRGEV 191
           KIDG   ++ Y+ G  V    RGDG  GE+++  +  IP IP+ ++  N P+++E+RGEV
Sbjct: 114 KIDGISASLLYQNGILVQGLSRGDGEYGEEITENLMTIPDIPKKIIYKNFPKLMEIRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
           YI K DF  + +         +ANPRNAA G LR+ +        L FF +   +++   
Sbjct: 174 YIGKKDFKNIENN--------FANPRNAAGGSLRQKDFKKTAAIPLKFFAYSTIQSNYSH 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + QYE L+ ++   F  N   R       +   YN+++ +RS L YDIDG+VYK+++ +
Sbjct: 226 FQSQYEFLEFLKYSNFKTNPLSRIIKNIKELEKNYNDLEQLRSGLDYDIDGIVYKINDLN 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQK+LG  + SPRW I+HKF+ ++A T++ DI+IQ+GRTG LTPVA+++P+N+GG +++N
Sbjct: 286 LQKRLGNLSNSPRWAIAHKFSAEKAFTKINDIEIQVGRTGALTPVAKVDPINVGGVMVSN 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED         +++R  +DIR+GD V ++RAG+VIP+VV + +++R    + ++F
Sbjct: 346 ATLHNED---------EIIR--KDIRIGDTVCIQRAGDVIPQVVYVDLSKRGRKTEAYNF 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           P+ CP C +  +++ N  + K+ A  RC   G  CS    E+LKH +S+DA NI+G GK+
Sbjct: 395 PAKCP-CGNDTIKEYNEISKKIDAVRRCPDVGYECSYMAKEKLKHLISKDALNIDGFGKK 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F+  +     I++P+DIF L  +       I+ + G+G++S  NL  SI K + +S
Sbjct: 454 VVDNFWNLK----LIKVPSDIFKLDYKA------IKELEGWGELSCNNLIKSIEKSKTLS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ---------EINNIIAHNNDDWLSLIR 600
           L +FI+++GIRH+G E A+ LA Y+ S   F +         E+NN           LI 
Sbjct: 504 LTKFIYAIGIRHIGQENAKILASYFKSITKFKKLFAPSLIKAELNN-----------LIE 552

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G+   +A+  F+ N +NI  +  L++ +   I   E   S    NK L+FTG   K
Sbjct: 553 IDGIGETQIKALEIFFSNKKNIKVINDLVECL--QISNFENITSGIFTNKTLMFTGGFSK 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R +A+      G  V   +S+K + ++VGD+    +K++KA+ L V+I++E+++  LL
Sbjct: 611 MSRSEAKTLAESQGGKVLGSISKKLNYLVVGDSKPTNNKVQKAKDLQVEIISEKKWHELL 670

Query: 719 QQ 720
           ++
Sbjct: 671 KR 672


>gi|303327018|ref|ZP_07357460.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3]
 gi|302863006|gb|EFL85938.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3]
          Length = 711

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 262/730 (35%), Positives = 386/730 (52%), Gaps = 65/730 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q R+    L  E+  H+  Y+    P I D +YDAL R    +   +P L     P+ P 
Sbjct: 22  QERERARRLSAELERHNYLYHTLDAPEISDEQYDALFRELTELEERWPGL---RSPHSPT 78

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI--FFTLEPK 133
            ++GG +   L K  H      L+ +++ ED R F+ R+ R W  + +  +   F  +PK
Sbjct: 79  LRVGGRLLDGLAKKAHRRRMYGLDNVFSDEDWRDFVERMQRAWDAELNGPLPLGFWCDPK 138

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEV 191
           +DG  + I YE G  + A  RGDG  GE V+  +R I T+P  L      P  +EVRGEV
Sbjct: 139 LDGLALEIIYENGLLIEALTRGDGEIGEVVTEAVRTIRTVPLRLRGEGPFPARLEVRGEV 198

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF 250
            + K DF ALN +  A+GRK +ANPRNAA+G LR+L+     +R L F  + LG+     
Sbjct: 199 VMFKKDFEALNAQQEALGRKTFANPRNAAAGTLRQLDISVTESRPLRFLAYSLGEADWAP 258

Query: 251 AKG---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           AK    Q+E++ ++   GF      R       + +Y   ++  R   P +IDG V K D
Sbjct: 259 AKPCLFQHELMARLTAYGFLTPPDGRLCAGADEVEAYAAWVREHRQDFPMEIDGAVAKED 318

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q+ LG  AR+PR+ ++ KF   QA TRL  IDIQ+GRTG+LTPVA LEPV +GG +
Sbjct: 319 NLEAQEALGFTARAPRFAVAFKFPAMQAETRLTGIDIQVGRTGVLTPVAVLEPVPVGGVM 378

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED I+            RD+RVGD V+V+RAG+VIP+VV  +++ R PDA  
Sbjct: 379 VSRATLHNEDEIR-----------ARDVRVGDTVIVQRAGDVIPEVVGPVLSRRPPDAVE 427

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C   V R+         AA RC   L+C A +L  + HFVS+   +I+G+G
Sbjct: 428 FVFPHTCPACGEAVHREPGE------AAWRCD-NLSCPAVRLRAISHFVSKAGLDIQGVG 480

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINK 544
           ++ +     S      ++ PAD+FTL         K E +L F   G+V      D++++
Sbjct: 481 QKWIAQLVTSG----RVQSPADLFTL---------KAEELLDFERMGEVLARKFVDALDE 527

Query: 545 RRNI-SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            R+  +L R I +LGIRHVG + AR LA ++    +  +           D  +L  +P 
Sbjct: 528 ARHTATLPRLISALGIRHVGEQTARLLAGHFRDLDDLGRA----------DAETLQALPD 577

Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVS----SEIENKKLVFT 655
           VG  +A +I  FY++P N   +E      L  +SP    +    +      ++ K ++FT
Sbjct: 578 VGPEVAASIRNFYESPANRAQLERFREMGLWPLSPLADANSAETAQTQVGPLQGKNILFT 637

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  +QR KAQ      GA+ +  +++K D ++VGD PGSKL+KA+ LG+ +++E  F 
Sbjct: 638 GTL-SLQRGKAQHLAEAAGAIPAGSVNKKLDFLVVGDKPGSKLDKARTLGIAVLDEAGFR 696

Query: 716 FLLQQYNTTL 725
            LL      L
Sbjct: 697 ELLAASGIPL 706


>gi|254283004|ref|ZP_04957972.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
 gi|219679207|gb|EED35556.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
          Length = 675

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/714 (34%), Positives = 383/714 (53%), Gaps = 61/714 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E++ L + I      YYQ   P + D++YDA  RR   +  A P+LA    P+ P  ++G
Sbjct: 8   EVAELRERIKRWALEYYQQDAPSVPDADYDAAFRRLHELESAHPELA---SPDSPTRRVG 64

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH +P LSL+  ++ +D   F  R+    ++   N+I +  EPK+DG  +
Sbjct: 65  AQPIAGFEQVTHRLPMLSLDNAFSSDDFDAFDQRVS---ERLGKNAIDYCCEPKLDGIAV 121

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE+GK   AA RGDG  GED++  +R I  IP  L     P+++EVRGEV++ +  F
Sbjct: 122 SLIYERGKLTQAATRGDGVVGEDITHNVRTIEAIPLALEGGGFPDVLEVRGEVFMPRVGF 181

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE- 256
             LND   A G K + NPRNAA+G LR+L+P     R L+F  + +G     F  GQ   
Sbjct: 182 ERLNDRARASGDKLFVNPRNAAAGSLRQLDPRVTARRPLDFCCYSVG-----FCSGQIRD 236

Query: 257 -------MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  ++ ++   G PV+  ++ A       +YY  +   R  LP+DIDG+V+KVD+ 
Sbjct: 237 LGDRHSAVIARLGEWGLPVSQWMKVATAAEACEAYYQWLAGERDGLPFDIDGIVFKVDDL 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+ LG  +R+PRW I+ KF  ++  TR+LD++ Q+GRTG +TPVARL+PV +GG  ++
Sbjct: 297 ESQRILGFVSRAPRWAIARKFPAQEQRTRVLDVEFQVGRTGAITPVARLDPVFVGGVTVS 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            + +GD V+++RAG+VIP+VV +I+ ER    +   
Sbjct: 357 NATLHNADEIERL-----------GLCIGDSVIIRRAGDVIPQVVAVILEERDESVRAVV 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP C S V R      G+  AA RC GGL C AQ+   L+HF SR A +I+GLG++
Sbjct: 406 FPDHCPACGSEVER----VEGE--AAFRCVGGLICPAQRRASLQHFASRKAMDIDGLGEK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E       +  DI  L      +   ++ +   G+ S  NL  +++K +  +
Sbjct: 460 VIEQLVARE-------LITDIAGLYGLDLETLVSLDRM---GEKSAENLVAALDKSKATT 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI++LGIR VG   AR+LA ++ S          ++   +D          VG ++A
Sbjct: 510 LARFIYALGIREVGESTARALAMHFGSLDAIEGAGQEVLEEVDD----------VGPVVA 559

Query: 610 QAIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             I  F+    N   +EAL++        +          +  +  V +G L+ + R +A
Sbjct: 560 THIRNFFSEAANRRTIEALIEAGVHWPDPVDSMAAGEEGALAGESWVVSGKLESMSRDQA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +  LGA V+  +S KT  ++ G   GSKL+KA+ LG+ +++E  FL LL++
Sbjct: 620 SDRLRSLGARVTGGVSNKTTRLLAGPGAGSKLKKAESLGLPVLDESDFLALLEE 673


>gi|69246831|ref|ZP_00604140.1| NAD-dependent DNA ligase [Enterococcus faecium DO]
 gi|260560049|ref|ZP_05832227.1| NAD-dependent DNA ligase [Enterococcus faecium C68]
 gi|293559999|ref|ZP_06676507.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162]
 gi|294621040|ref|ZP_06700232.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317]
 gi|314937827|ref|ZP_07845144.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04]
 gi|314941627|ref|ZP_07848507.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C]
 gi|314948874|ref|ZP_07852243.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082]
 gi|314951008|ref|ZP_07854075.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A]
 gi|314993009|ref|ZP_07858405.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B]
 gi|314996456|ref|ZP_07861499.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01]
 gi|68195064|gb|EAN09526.1| NAD-dependent DNA ligase [Enterococcus faecium DO]
 gi|260073884|gb|EEW62208.1| NAD-dependent DNA ligase [Enterococcus faecium C68]
 gi|291599354|gb|EFF30379.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317]
 gi|291606087|gb|EFF35513.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162]
 gi|313589438|gb|EFR68283.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01]
 gi|313592532|gb|EFR71377.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B]
 gi|313596863|gb|EFR75708.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A]
 gi|313599518|gb|EFR78361.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C]
 gi|313642858|gb|EFS07438.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04]
 gi|313644664|gb|EFS09244.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082]
          Length = 679

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 247/714 (34%), Positives = 398/714 (55%), Gaps = 63/714 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S   
Sbjct: 6   MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+    QK     + +  E
Sbjct: 63  DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  + L  P  IEVRGE 
Sbjct: 119 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+ + IT  R L+ F++ +     +
Sbjct: 177 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EF
Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +   D      + AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 458 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSK----------SDYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660
            ++V ++ N      V  L+ E+  +    E         + V S  + K +V TG L +
Sbjct: 558 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTR 613

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q 
Sbjct: 614 FTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 667


>gi|300861866|ref|ZP_07107946.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11]
 gi|300848391|gb|EFK76148.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11]
          Length = 676

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + SY  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668


>gi|315161924|gb|EFU05941.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0645]
          Length = 676

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + SY  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTLKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668


>gi|257878462|ref|ZP_05658115.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933]
 gi|257889341|ref|ZP_05668994.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410]
 gi|257894353|ref|ZP_05674006.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408]
 gi|258616016|ref|ZP_05713786.1| DNA ligase, NAD-dependent [Enterococcus faecium DO]
 gi|257812690|gb|EEV41448.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933]
 gi|257825701|gb|EEV52327.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410]
 gi|257830732|gb|EEV57339.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408]
          Length = 678

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 247/714 (34%), Positives = 398/714 (55%), Gaps = 63/714 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S   
Sbjct: 5   MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 61

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+    QK     + +  E
Sbjct: 62  DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  + L  P  IEVRGE 
Sbjct: 118 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+ + IT  R L+ F++ +     +
Sbjct: 176 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EF
Sbjct: 235 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 295 SLQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 404 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +   D      + AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 457 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSK----------SDYESIIALDTIGDIIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660
            ++V ++ N      V  L+ E+  +    E         + V S  + K +V TG L +
Sbjct: 557 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTR 612

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q 
Sbjct: 613 FTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 666


>gi|257882881|ref|ZP_05662534.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502]
 gi|257818539|gb|EEV45867.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502]
          Length = 674

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 247/714 (34%), Positives = 398/714 (55%), Gaps = 63/714 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S   
Sbjct: 1   MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+    QK     + +  E
Sbjct: 58  DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  + L  P  IEVRGE 
Sbjct: 114 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+ + IT  R L+ F++ +     +
Sbjct: 172 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 230

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EF
Sbjct: 231 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 291 SLQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 350

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 351 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 400 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 452

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +   D      + AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 453 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 502

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 503 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSK----------SDYESIIALDTIGDIIA 552

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660
            ++V ++ N      V  L+ E+  +    E         + V S  + K +V TG L +
Sbjct: 553 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTR 608

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q 
Sbjct: 609 FTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 662


>gi|229083590|ref|ZP_04215919.1| DNA ligase [Bacillus cereus Rock3-44]
 gi|228699722|gb|EEL52378.1| DNA ligase [Bacillus cereus Rock3-44]
          Length = 669

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/715 (35%), Positives = 402/715 (56%), Gaps = 62/715 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +S E+A++ +  L   ++    C YQY     P + D+EYD   +    +    P+   +
Sbjct: 1   MSKEKAKQRIEELRDMLNA---CNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFL-T 56

Query: 69  EDPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           ED   P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  D  ++ 
Sbjct: 57  ED--SPTVRVGGAV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDSANVR 110

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  E KIDG  +++ YEKG+FV  A RGDG +GED++  ++ I  IP  L L     +E 
Sbjct: 111 YICELKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIP--LRLKEEVTLEA 168

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL   
Sbjct: 169 RGEAYMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLADV 228

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E       + L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KV
Sbjct: 229 EEKTIVSHSDSLNFLGELGFKTNPNRRTCETIEDVITYVEEWQEKRPDLDYEIDGIVIKV 288

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G 
Sbjct: 289 DDVALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGT 348

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++  A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++ ++R  + +
Sbjct: 349 IVRRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEE 397

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            +  P+ CP C S +VR L  +      A RC    AC AQ  E L HFVSR+A NI+GL
Sbjct: 398 EYHMPTHCPTCDSELVR-LEEEV-----ALRCINP-ACPAQIREGLIHFVSRNAMNIDGL 450

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +   F+++     IR  AD++ L + Q     +      FG+ S + L  +I   +
Sbjct: 451 GERVITQLFEAD----YIRTFADLYPLTQEQLLQLER------FGEKSASKLVQAIEASK 500

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SLER +F LGIRHVGA+ AR+LA+++        E  +++    ++ L  I    +G+
Sbjct: 501 ENSLERLLFGLGIRHVGAKAARTLAEHF--------ETMDLLVKATEEELKEINE--IGE 550

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS-----PSIGRHE-KNVSSEIENKKLVFTGTLQK 660
            +AQ+IV ++ N  ++  +    KE         I R + +NV S    K +V TG L+ 
Sbjct: 551 KMAQSIVTYFDN-EDVLELLQQFKEYGVNMTYKGIKRADLQNVESYFAGKTIVLTGKLEV 609

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R +A++ + +LG  V+  +S+ TD+++ G+  GSKL +A++  +++ NEE+FL
Sbjct: 610 MGRSEAKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFL 664


>gi|195953269|ref|YP_002121559.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1]
 gi|254781349|sp|B4U8X0|DNLJ_HYDS0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|195932881|gb|ACG57581.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1]
          Length = 700

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/723 (35%), Positives = 410/723 (56%), Gaps = 68/723 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS E+A K +++L + I+YHD  YY  ++P+I D+EYDA+ +   +I   +PDL     P
Sbjct: 28  LSKEEAIKIINTLRELINYHDYRYYVLNQPVISDAEYDAIYKFLKSIEDNYPDLIT---P 84

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++  +++ +  +V H  P LSL+  +N +DLR F  R+     K+    I + +E
Sbjct: 85  DSLTQRVSSDISSTFPQVKHLAPMLSLDNTYNEDDLRDFDRRVKELSGKE---HIEYCVE 141

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE----IIEV 187
           PK DG  I++ YE   FV  A RGDG  GEDV+  ++ I TIP  L  N  +    ++E+
Sbjct: 142 PKYDGAGISLLYENDLFVRGATRGDGEVGEDVTKNLKTIKTIP--LRANFSKQGIRLLEI 199

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-- 244
           RGEV I+K+DF  +N+E +A    PYANPRN A+G +R  +P ++  R L   V+ +   
Sbjct: 200 RGEVIINKDDFKKINEERMAENLPPYANPRNLAAGSIRLQDPQEVVKRPLTALVYQITYV 259

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           + +    K  Y  ++ +  LGF      ++       ++ Y    +S R +LPY+IDG+V
Sbjct: 260 EPTNNMPKTHYGAIKMLHDLGFKTPFLDMKLCKNIQEVIDYCRYFESKRESLPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++ SL  +LG  + +PRW  + KF  KQA+T +LD+   +GR G +TPVA+LEPV++
Sbjct: 320 IKVNDISLYDELGFTSHAPRWATAFKFKAKQATTIILDVIFSVGRVGNITPVAKLEPVSL 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  I++ +L NED+I+            +DI + D V+++RAGEVIP VV ++   R  
Sbjct: 380 GGVTISSVSLFNEDFIR-----------EKDIHIKDTVIIERAGEVIPYVVSVVKEARPK 428

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+P  FP +CP C S++V+      G++  A RC   ++C AQ + R++HF S+DA +I
Sbjct: 429 DAKPIVFPKYCPSCGSKLVK----APGEV--AWRCI-NISCPAQVVLRIRHFASKDAMDI 481

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG+      + ++     ++  ADI+ L+       + +  +  F   S  NL D+I 
Sbjct: 482 KGLGEAVAQLLYDAK----LVKNIADIYYLK------FSDLVRLPRFAKKSAQNLIDAIE 531

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +   L R ++ LGIR+VG   A+ LA YY       ++I NI+  + +D   L  +  
Sbjct: 532 ASKRRGLARVLYGLGIRYVGLTTAKKLASYY-------KDIWNIVKASEED---LRNIED 581

Query: 604 VGDIIAQAIVEFYQNPRNICAVE------ALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           +GDI+A++I EF+   +NI  ++       LLKEVS +       VS+++   + VFTGT
Sbjct: 582 IGDIVARSIKEFFGLEQNINTIKRLEEAGVLLKEVSEA-------VSNKLAGLQFVFTGT 634

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           L    R  A++ V  LGA  S  ++  T  ++VG +PG +KL KA  LG+K ++EE+FL 
Sbjct: 635 LSCCTREVARQMVESLGATTSDSVTHHTSYLVVGQDPGATKLRKANMLGIKTISEEEFLR 694

Query: 717 LLQ 719
           LL+
Sbjct: 695 LLE 697


>gi|255973805|ref|ZP_05424391.1| NAD-dependent DNA ligase [Enterococcus faecalis T2]
 gi|256964440|ref|ZP_05568611.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704]
 gi|257080988|ref|ZP_05575349.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol]
 gi|307272536|ref|ZP_07553789.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855]
 gi|307284516|ref|ZP_07564678.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860]
 gi|255966677|gb|EET97299.1| NAD-dependent DNA ligase [Enterococcus faecalis T2]
 gi|256954936|gb|EEU71568.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704]
 gi|256989018|gb|EEU76320.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol]
 gi|306503193|gb|EFM72447.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860]
 gi|306510821|gb|EFM79838.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855]
 gi|315151576|gb|EFT95592.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0012]
 gi|315170712|gb|EFU14729.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1342]
 gi|327534312|gb|AEA93146.1| NAD-dependent DNA ligase LigA [Enterococcus faecalis OG1RF]
          Length = 676

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668


>gi|29375318|ref|NP_814472.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583]
 gi|227554838|ref|ZP_03984885.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22]
 gi|256761492|ref|ZP_05502072.1| NAD-dependent DNA ligase [Enterococcus faecalis T3]
 gi|257415292|ref|ZP_05592286.1| NAD-dependent DNA ligase [Enterococcus faecalis AR01/DG]
 gi|257418334|ref|ZP_05595328.1| NAD-dependent DNA ligase [Enterococcus faecalis T11]
 gi|81437298|sp|Q837V6|DNLJ_ENTFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29342778|gb|AAO80542.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583]
 gi|227176007|gb|EEI56979.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22]
 gi|256682743|gb|EEU22438.1| NAD-dependent DNA ligase [Enterococcus faecalis T3]
 gi|257157120|gb|EEU87080.1| NAD-dependent DNA ligase [Enterococcus faecalis ARO1/DG]
 gi|257160162|gb|EEU90122.1| NAD-dependent DNA ligase [Enterococcus faecalis T11]
 gi|315031451|gb|EFT43383.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0017]
 gi|315166929|gb|EFU10946.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1341]
 gi|315575350|gb|EFU87541.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309B]
 gi|315581380|gb|EFU93571.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309A]
          Length = 676

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLAQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668


>gi|256957407|ref|ZP_05561578.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5]
 gi|257077597|ref|ZP_05571958.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1]
 gi|294779927|ref|ZP_06745308.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1]
 gi|256947903|gb|EEU64535.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5]
 gi|256985627|gb|EEU72929.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1]
 gi|294452976|gb|EFG21397.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1]
 gi|295114065|emb|CBL32702.1| DNA ligase, NAD-dependent [Enterococcus sp. 7L76]
 gi|315036101|gb|EFT48033.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0027]
 gi|315172192|gb|EFU16209.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1346]
          Length = 676

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMV 668


>gi|258422981|ref|ZP_05685880.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9635]
 gi|257846768|gb|EEV70783.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9635]
          Length = 667

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 253/702 (36%), Positives = 386/702 (54%), Gaps = 58/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C 
Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558

Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +I A+   LK+     +   I   +     E   K +V TG L K+ R++A +++T  
Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHKMTRNEASKWLTSQ 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+
Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659


>gi|77919807|ref|YP_357622.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380]
 gi|123756590|sp|Q3A2F5|DNLJ_PELCD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77545890|gb|ABA89452.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380]
          Length = 671

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 248/697 (35%), Positives = 381/697 (54%), Gaps = 52/697 (7%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           E+  H   YY Y +P I D+EYD L R    +  A+P+L  +  P+    ++G       
Sbjct: 16  ELHRHSRLYYTYDRPEITDAEYDRLFRELLELEKAYPELVTAASPS---LRVGASPLSQF 72

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
             V HS P LSLE     ++L  F  RI +      D  + +  E K+DG  + + Y  G
Sbjct: 73  TPVPHSRPMLSLENALTEDELYDFDARIRKLL--ASDAPVRYVCELKMDGVAVELVYRDG 130

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
                + RGDG +GE ++  +R IP+IP VLS   P ++EVRGEVYI  +DF  LN E  
Sbjct: 131 ILSVGSTRGDGTTGEGITENLRTIPSIPLVLSGEAPALLEVRGEVYIDLDDFQKLNHERE 190

Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
             G + +ANPRNAA+G LR+L+      R L  F +G+G+ S       + +L+ M   G
Sbjct: 191 EEGLQVFANPRNAAAGSLRQLDSAVTAKRPLKIFCYGIGQLSGEHPASHHSLLKCMHRWG 250

Query: 266 FPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
             VN  +  + T  GI     Y+ +++  R  LPY+IDG+V KVD+ +LQ++LGE+ R+P
Sbjct: 251 LRVN--LEHSRTLEGIEQVTDYFRQLQQRRDELPYEIDGMVVKVDDLALQRELGEKTRTP 308

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW I+ KF  +QA T + DI +Q+GRTG +TPVA+L+PV + G  ++ A+LHN D I  L
Sbjct: 309 RWAIACKFPPRQAVTVVEDIVLQVGRTGAITPVAQLKPVEVSGVTVSRASLHNWDEIARL 368

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                      D+ +GD V+V+RAG+VIP VV ++   R+   +    P  CP C   VV
Sbjct: 369 -----------DVLIGDTVVVERAGDVIPDVVKVLTEHRNGQERSVPLPQSCPACGGPVV 417

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           +      G++V   RC   ++C A+  E +KHFV+R A +I+GLG++ ++   K E    
Sbjct: 418 K----LEGEVVP--RCQ-EMSCPARLRESIKHFVARRAMDIDGLGERTIEQLLKRE---- 466

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            I+  AD++ L +       ++       D S   L  +I   +   L RF+F+LGIRHV
Sbjct: 467 LIKSVADLYHLTKEDLLLCERL------ADKSAEKLLTAIAASKTRPLGRFLFALGIRHV 520

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G  +A  LA+ + S         + ++H   +   L+ +  +G  +A ++ +F+   RN 
Sbjct: 521 GEHLASLLARQFGSL--------DALSHATRE--ELLAIHEIGPQVADSVTDFFAKSRNR 570

Query: 623 CAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
             + AL +  V+P     EK     +  K  VFTG+L +  R +AQE V +LG   S  +
Sbjct: 571 EILAALQRAGVAPQA--EEKRSGGPLTGKSFVFTGSLTRFSRKQAQEMVERLGGRASGSV 628

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+KTD ++ G+  GSKLEKA+QL ++I++EE+FL ++
Sbjct: 629 SKKTDCVVAGEAAGSKLEKARQLNIQILSEEEFLQMI 665


>gi|78043193|ref|YP_359946.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123743192|sp|Q3AD38|DNLJ_CARHZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77995308|gb|ABB14207.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 664

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/705 (36%), Positives = 393/705 (55%), Gaps = 55/705 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  +K +  L   + YH+  YY   +P I D+EYD + R   ++   +P+      P+ P
Sbjct: 4   EAVKKRIEELRALLHYHNYRYYVLDQPEISDAEYDRMLRELISLEQQYPEFI---TPDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE+     +V H  P  SL+  +  EDL++F  R+      ++   + + +E KI
Sbjct: 61  SQRVGGEVAKEFREVAHLKPMYSLDNAFGPEDLKEFDRRVRSLLPGQE---VEYEVELKI 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++ YE G  V  A RG+G +GED++A ++ I  IP  L   IP ++EVRGE Y+ 
Sbjct: 118 DGLAISLVYENGVLVRGATRGNGTTGEDITANVKTIKAIPLKLRNPIP-LLEVRGEAYMP 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN++    G   +ANPRNAA+G LR+L+P     R L+ F++ +G+      K 
Sbjct: 177 KESFARLNEQREERGEPLFANPRNAAAGSLRQLDPKVTAERDLSAFMYAIGEVQGYEPKT 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q E+++ +  LGF VN      N    +++Y       R +LPY IDGLV KV+  + Q+
Sbjct: 237 QAELMEWLSELGFKVNPYREVFNNIDDVINYCQSWHEKRFSLPYVIDGLVIKVNSLAQQE 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  + A TRL DI +++GRTG+LTP A  EPV++ G  +T A+L
Sbjct: 297 ALGFTAKSPRWAIAYKFPAEIAETRLKDIIVRVGRTGVLTPTAIFEPVSLAGTTVTRASL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNEDYI+            +DIR+GD + V++AGE+IP+VV+++  +R    + F  P  
Sbjct: 357 HNEDYIR-----------EKDIRIGDIIRVQKAGEIIPEVVEVVKEKRTGAEKEFVMPDT 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQ + VR      G+  AA RCT   +C AQ  E + HF SR A NIEGLG    + 
Sbjct: 406 CPVCQGKAVR----LPGE--AAWRCTNA-SCPAQLKEGIVHFASRGAMNIEGLGPAVAEL 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +    A  I   AD++ L      S  ++  +   G  S  NL ++I K +  SLER 
Sbjct: 459 LLE----AGLIHNYADLYYL------SAEEVARLPRMGKKSAENLINAIEKSKQNSLERL 508

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIR VG + AR LA ++       +E++ +IA   ++ ++   +P VG  +A +I 
Sbjct: 509 IYGLGIRLVGEKAARDLAVHF-------KELDKLIAAGEEEIMA---IPSVGPKMAASIK 558

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQEY 669
            F+    N+  +E L      + G + K ++    + +E    V TGTL    R +A++ 
Sbjct: 559 AFFAQKENLELIEKL-----KAAGVNTKYLAEVRDNRLEGLTFVLTGTLSSFTRKEAEQL 613

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           +  LG  VS+ +S+KT  ++VG++PGSKL KA++LG+ I+ EE+F
Sbjct: 614 ILSLGGKVSSSVSKKTSYVVVGEDPGSKLTKAKELGIPILTEEEF 658


>gi|327475237|gb|AEA77213.1| DNA ligase [Bacillus aquimaris]
          Length = 668

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 399/713 (55%), Gaps = 64/713 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S E+  KEL  +  + +Y    Y+   KP + DSEYD L R    +   FPDL  S+ P+
Sbjct: 5   SAEKRVKELHDVLNQYNYE---YHVLDKPSVPDSEYDQLLRELIELEDQFPDLKTSDSPS 61

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GG +  S  KV H  P LSL   +N EDLR F  R+ +     DD S  +  E 
Sbjct: 62  ---ERVGGSILESFEKVEHRTPMLSLGNAFNEEDLRDFDRRVRQ--SVGDDFS--YVCEL 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +++RYE G FV  A RGDG  GED+++ ++ I +IP  L ++ P   EVRGE +
Sbjct: 115 KIDGLAVSLRYEDGVFVQGATRGDGTIGEDITSNLKTIRSIP--LKISEPISFEVRGEAF 172

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + K  F ALN        +P+ANPRNAA+G LR+L+P    +R L+ F++ L    +   
Sbjct: 173 MPKGSFEALNKVKEEKEEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYALADVGDTGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +   E L ++  LGF  N   R+  T   ++ +       R  LPYDIDG+V KVD    
Sbjct: 233 ESHSEGLDRLERLGFKTNQERRRCATIEEVIEFVEGWTDKRPNLPYDIDGIVIKVDALQQ 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  A+SPRW I+ KF  ++  T L DI++ IGRTG+LTP A L+PV + G  +  A
Sbjct: 293 QQQLGTTAKSPRWAIAFKFPAEEVVTVLKDIELSIGRTGVLTPTAILDPVRVAGTTVQRA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +DI++GD V++K+AG++IP+VV+++ ++R  + Q F  P
Sbjct: 353 SLHNEDLIR-----------EKDIKIGDHVVIKKAGDIIPEVVNVLEDKRTGEEQEFKMP 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ +
Sbjct: 402 THCPECDSELVR----LEGEV--ALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEKVI 454

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              F+ +     I   AD++ L+R Q     ++      G+ SV NL ++I   +  SLE
Sbjct: 455 SQLFREK----LIEDVADLYRLEREQLLQLERM------GEKSVDNLLEAIEASKENSLE 504

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LG+RHVGA+ A++LA+ + S +        ++  + D+   L  +  +G+ +A A
Sbjct: 505 KLLFGLGVRHVGAKAAKTLAQQFHSME-------KLMTVSKDE---LTDINEIGEKMAAA 554

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQKIQ 662
           IV ++ N      V+ L++E+  +    E           V S    K +V TG ++ + 
Sbjct: 555 IVAYFDNEE----VKELIEELKEAGVNLEYKGPKPVKVSEVDSYFAGKTVVLTGKIEVLS 610

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R++A++ +  LG  V+  +S+KTD++I G++ GSKL KA +L +++ +E++ +
Sbjct: 611 RNEAKDKIEMLGGKVTGSVSKKTDLVIAGEDAGSKLAKANELNIEVWDEDKLM 663


>gi|257086082|ref|ZP_05580443.1| NAD-dependent DNA ligase [Enterococcus faecalis D6]
 gi|256994112|gb|EEU81414.1| NAD-dependent DNA ligase [Enterococcus faecalis D6]
 gi|315025779|gb|EFT37711.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2137]
          Length = 676

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D +++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHIIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668


>gi|125973550|ref|YP_001037460.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405]
 gi|256003369|ref|ZP_05428360.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360]
 gi|281417755|ref|ZP_06248775.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20]
 gi|166215580|sp|A3DE88|DNLJ_CLOTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|125713775|gb|ABN52267.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405]
 gi|255992659|gb|EEU02750.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360]
 gi|281409157|gb|EFB39415.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20]
 gi|316940208|gb|ADU74242.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 1313]
          Length = 663

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/703 (33%), Positives = 398/703 (56%), Gaps = 46/703 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L + ++YH   YY    P I D EYD L R  + +    PDL     P+ P  +I
Sbjct: 5   KRILELREILNYHSHKYYVEDAPEISDFEYDELYRELEKLEQERPDLI---TPDSPTQRI 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG+      KV H++   SL  +++ E+L  F  R+    ++   + + + +E KIDG  
Sbjct: 62  GGKPLEGFKKVVHAVQMQSLSDVFSREELLAFDRRV----REAVGDDVEYVVEKKIDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ YE G F   A RGDG  GEDV+  ++ I TIP  L  ++P ++EVRGEV+ISK DF
Sbjct: 118 VSLVYENGVFTRGATRGDGLVGEDVTQNLKTIRTIPLRLKRDLP-LLEVRGEVFISKKDF 176

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
           + +N+E  A G++ +ANPRNAA+G LR+L+P   + R L+ FV  + +      K   E 
Sbjct: 177 IKINEEQEAAGQQLFANPRNAAAGSLRQLDPKVTSQRKLDIFVFNIQRIEGQSFKTHSET 236

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ ++ LGF  + G +     + +    N +   R  + ++IDG V KV+    ++ LG 
Sbjct: 237 LEFLKELGFKTSPGYKVCKDINAVWEEINRIGEERGEIDFEIDGAVVKVNSLEQREILGS 296

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW +++K+  +   T +  I + +GRTG+LTP+A  +PV + G+ ++ ATLHN D
Sbjct: 297 TIKAPRWAVAYKYPAEVKETVVKKITVNVGRTGVLTPIAIFDPVRLAGSTVSRATLHNMD 356

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YIK            +DIR+GD V +++AG++IP+VVD++  +R  +   F+ P  CP+C
Sbjct: 357 YIK-----------EKDIRIGDTVRIRKAGDIIPEVVDVVFEKRSGNEAEFNMPEQCPVC 405

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            + VVR+         AA+RCT G+ CSAQ   ++ HF SRDA NIEGLG   ++   + 
Sbjct: 406 GADVVREEGE------AAYRCT-GIECSAQLYRKIVHFASRDAMNIEGLGPAIIEVLLEK 458

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I+  AD++ L + ++T    + NI   G  SV NL  SI K +  +++R IF  
Sbjct: 459 ----GLIKEIADLYYLHKEKET----LVNIERMGKKSVENLLASIEKSKQNNIDRLIFGF 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G   A+ L+      +NF + ++ ++  + +D ++   +P  G+ +A+++ +F++
Sbjct: 511 GIRHIGLRAAQLLS------ENF-ESLDALMNASAEDIMA---IPEFGEKMAKSVEQFFR 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             +N   VE L      ++   +K +  +  E K  V TGTL    R +A+E +   G  
Sbjct: 561 QKQNRDTVEKLKAAGVNTVSFGKKKIKDNRFEGKTFVLTGTLPSFTRKEAEEIIKSFGGK 620

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            S  +S+KTD ++ G++ GSKL+KA++LG++I++E++F  +++
Sbjct: 621 TSGSVSKKTDYVLAGEDAGSKLQKAKELGIEIIDEDKFRKMIE 663


>gi|152981161|ref|YP_001353755.1| DNA ligase (polydeoxyribonucleotide synthase) [Janthinobacterium
           sp. Marseille]
 gi|166215814|sp|A6SZQ8|DNLJ_JANMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151281238|gb|ABR89648.1| DNA ligase (Polydeoxyribonucleotide synthase) [Janthinobacterium
           sp. Marseille]
          Length = 692

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/704 (36%), Positives = 381/704 (54%), Gaps = 51/704 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E++ H+  Y+    P I D+EYD L R   A+  + P+L   + P     ++G  + 
Sbjct: 33  LRDELNRHNYSYHVLDNPSIPDAEYDKLFRELQALETSHPELLVFDSPT---QRVGA-LA 88

Query: 84  LSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           LS F +VTHS+P LSL   +  ED+  F  R+       +   I +  E K DG  I +R
Sbjct: 89  LSAFPQVTHSVPMLSLGNGFEDEDIIAFDKRVS---DGLNSTEIEYATELKFDGLAINLR 145

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLAL 201
           YE G  V AA RGDG +GE+V+  IR +  IP R+ +   P++++VRGEV + K D   L
Sbjct: 146 YEDGILVEAATRGDGATGENVTTNIRTVRAIPLRLHTATPPKVLDVRGEVMMYKADLAKL 205

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEML 258
           N      G K +ANPRNAA+G LR+L+ + IT  R L FF +G+G             +L
Sbjct: 206 NARQRDAGGKEFANPRNAAAGSLRQLD-SRITAQRTLRFFAYGIGMLEGAEMPPSHSALL 264

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
                LG PV           G++ +Y  +   R TLPY+IDG+VYKV+    Q+QLG  
Sbjct: 265 DWYAELGLPVCAERAVVKGAAGLLEFYKAVGQKRPTLPYEIDGVVYKVNRVEQQQQLGFV 324

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           +R+PR+ I+HKF  ++A T +  I++Q+GRTG +TPVARL PV +GG  +TNATLHNED 
Sbjct: 325 SRAPRYAIAHKFPAEEALTTVQGIEVQVGRTGAITPVARLAPVLVGGVTVTNATLHNEDE 384

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++            +DI++GD V+V+RAG+VIP+VV  +  +R  DAQPF  P+ CP+C 
Sbjct: 385 VR-----------RKDIQIGDTVIVRRAGDVIPEVVAYVPEKRPVDAQPFVMPTNCPVCN 433

Query: 439 SRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           S +V+  +       A  RC+GG + C+AQ+   L HFVSR A ++EGLG Q ++     
Sbjct: 434 SPIVKLEDE------AIARCSGGWVKCAAQRKGGLLHFVSRRAMDVEGLGDQLVEQLVDK 487

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   AD++ L  R      ++       D S  N+  ++ K ++ +L RFI++L
Sbjct: 488 H----IITTAADLYKLGFRALAELDRM------ADKSAQNVMAALEKSKSTTLARFIYAL 537

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG   A+ LA+++ + +   Q               L+ V  +G ++AQ+I  F  
Sbjct: 538 GIRHVGEATAKELARHFGNLEALLQASEE----------QLLEVADIGPVVAQSIRSFLS 587

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           +P N+  +E L            +N       K  V TGTL  + R +A E +   G  V
Sbjct: 588 DPLNMELIEQLQAAGVRWPEHVVENKPKPFAGKTFVLTGTLPTLSRDQAAEKIEAAGGKV 647

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +  +S+KT  ++ G + GSKL KA++LG+ I++E   L LL  +
Sbjct: 648 AGSVSKKTSYVVAGADAGSKLAKAEELGITILDESALLQLLDTH 691


>gi|225849186|ref|YP_002729350.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1]
 gi|254781434|sp|C1DW63|DNLJ_SULAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225644062|gb|ACN99112.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 701

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 259/734 (35%), Positives = 409/734 (55%), Gaps = 61/734 (8%)

Query: 2   KKRQLIPIEALSIEQARKE--LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           K R+ + ++  SI++ + E  +  L + I +HD  YY  ++P+I D EYD L +    I 
Sbjct: 13  KTREFLNLDIKSIDRKKAESIIEDLREVIRFHDWRYYVLAQPVISDYEYDKLFKLLKDIE 72

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             +PDL     P+ P  ++  E+     +V H  P LSL+  +N  DLR F  R+     
Sbjct: 73  SKYPDLI---TPDSPTQRVPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVRELTG 129

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RV 176
            +    I + +EPK DG  I++ YEK  F   A RGDG  GED++  ++ I +IP   + 
Sbjct: 130 LE---KIEYAVEPKFDGAGISLIYEKDLFKRGATRGDGEVGEDITNNLKVIKSIPLSAKF 186

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
            S  I ++ E+RGEV I K+ F  +N++ +  G   +ANPRNAA+G +R  +P ++  R 
Sbjct: 187 SSYGIDKV-EIRGEVLIRKDIFKRINEQRLEEGLPLFANPRNAAAGSIRLQDPKEVAKRG 245

Query: 236 LNFFVHGLGKTSE-------IFAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNE 287
           L  FV+ +    +          K   + ++ +  LGF     V +  N    ++ Y  E
Sbjct: 246 LEAFVYQITYAEKDGKNLLGTVLKKHSDNIKMLHLLGFKTPYEVLKVCNGIDEVIDYCRE 305

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
            +  R   PY+IDG+V KV++ SL ++LG  +  PRW I++KF  +QA+T+++D+  Q+G
Sbjct: 306 WERKRDNYPYEIDGMVIKVNDISLYEKLGFTSHHPRWAIAYKFKARQATTKIIDVVFQVG 365

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG +TPVA+L+PV IGG ++++ +L NED+I+            +DIR+GD VLV+RAG
Sbjct: 366 RTGAITPVAKLQPVEIGGVIVSSVSLFNEDFIR-----------EKDIRIGDTVLVERAG 414

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           +VIP VV +I   R  + +P  FP  CP C S +V+ L        A +RC   + C AQ
Sbjct: 415 DVIPYVVMVIKEARTGNEKPIEFPKNCPSCGSPLVKPLGE------AVYRCI-NINCPAQ 467

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
            +ER+ HF S+DA +I+GL +  +  F+K         IP DI+ L  R       I+NI
Sbjct: 468 VIERIIHFASKDAMDIKGLSEATVKKFYKL---GLLKSIP-DIYRLDFRI------IKNI 517

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            GFG+ SV NL  +I + +N  L R I+ LGIR+VG   A++LA    S  N  +++ N 
Sbjct: 518 QGFGEKSVNNLKQAIEESKNRPLYRLIYGLGIRYVGEVTAKTLA----SAVNCLEDLKNF 573

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
              +      L+++P +GD +A  I  F+ N +N+  ++  LKE+  ++   ++    ++
Sbjct: 574 TITD------LMKLPDIGDKVATEIYNFFHNEQNLKMIQQ-LKELGVNVCNPKEEKRGKL 626

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GV 706
                VFTG L+   R KA+E V  LG  V   +S+K   ++VG+ PGSKL+KAQ++  +
Sbjct: 627 AGLNFVFTGALKCCSREKAKEIVESLGGNVLDTVSKKVHYLVVGEEPGSKLQKAQKIPTI 686

Query: 707 KIMNEEQFLFLLQQ 720
           KI+NEE+FL ++ Q
Sbjct: 687 KIINEEEFLKMIGQ 700


>gi|315145225|gb|EFT89241.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2141]
          Length = 676

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/713 (34%), Positives = 397/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + SY  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G   
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTG 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668


>gi|255971181|ref|ZP_05421767.1| NAD-dependent DNA ligase [Enterococcus faecalis T1]
 gi|255962199|gb|EET94675.1| NAD-dependent DNA ligase [Enterococcus faecalis T1]
          Length = 676

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 RAEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668


>gi|229546559|ref|ZP_04435284.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322]
 gi|256854411|ref|ZP_05559775.1| DNA ligase [Enterococcus faecalis T8]
 gi|307274689|ref|ZP_07555861.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134]
 gi|307296388|ref|ZP_07576212.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411]
 gi|229308304|gb|EEN74291.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322]
 gi|256709971|gb|EEU25015.1| DNA ligase [Enterococcus faecalis T8]
 gi|306496043|gb|EFM65628.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411]
 gi|306508618|gb|EFM77716.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134]
 gi|315029103|gb|EFT41035.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4000]
 gi|315157732|gb|EFU01749.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0312]
 gi|323479918|gb|ADX79357.1| DNA ligase, NAD-dependent [Enterococcus faecalis 62]
          Length = 676

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/713 (34%), Positives = 397/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FVLQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMV 668


>gi|88608555|ref|YP_506384.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama]
 gi|123736355|sp|Q2GDR2|DNLJ_NEOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|88600724|gb|ABD46192.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama]
          Length = 670

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/710 (35%), Positives = 401/710 (56%), Gaps = 53/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A+KE+  L +++  H+  YYQ   P I D+EYD++K R   +  A P L       G  
Sbjct: 2   EAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKDRYLKLLEANPSL-------GFP 54

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G   +    KV H  P LSL  I++ E+L ++I +  RF   K  +++ F  EPKID
Sbjct: 55  VVVGYPASEKFQKVKHLSPMLSLRNIFSEEELVEYIEKTKRFLNLK--SALEFLCEPKID 112

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G   + RY  GK V  A RGDG  GE++   ++ I   P +  +++P+++EVRGEV++  
Sbjct: 113 GVSFSARYVNGKLVSCATRGDGKIGENIIDNMKVINGFP-IEIMDVPDLLEVRGEVFLDH 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG 253
           + F  L         + ++NPRNAA+G LR+LNP +IT  R L +F +   K   I  + 
Sbjct: 172 DTFQTL---------EGFSNPRNAAAGSLRQLNP-EITNERNLQYFAYSASKIDGI--EH 219

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q ++L  +   GF  N     ++    I+S+Y+ +   RS + YDIDGLVYKV++  L  
Sbjct: 220 QEDVLHFLSGRGFMTNPLRLASSKVPEIMSFYDSVYRRRSQIKYDIDGLVYKVNDLKLHA 279

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  + +PRW I+HKF   +A T L  I + +GRTGI+TPVA L+P+ IGG +I+ A+L
Sbjct: 280 RLGTLSDAPRWAIAHKFPSHRAKTILEKIKLSVGRTGIITPVAHLKPITIGGVVISRASL 339

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           +NED ++            +DIR GD V+V+RAG+VIPKV+++ ++ R  + + F FP  
Sbjct: 340 YNEDELE-----------RKDIREGDLVIVERAGDVIPKVLEVDISYR-TNQERFIFPDK 387

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S ++R  N       AA RC     C  Q ++++KH VS  AF+I+G+G   + F
Sbjct: 388 CPSCSSTLIRKNNE------AATRCNNSKKCPEQVIQQIKHLVSAQAFDIDGIGTSHISF 441

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F    +  F I  PADIF L + +     +I+   G+G+ SV N+  +I   R ISLE+F
Sbjct: 442 FI---EKGF-ISEPADIFRLDKHRD----EIKKYDGWGEKSVENILKNIKNSRKISLEKF 493

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IFSLGI+++G + A  LA+ + S+ N+  ++ +++  +      +  +  +G  I ++++
Sbjct: 494 IFSLGIKNIGEKTAYMLAQQFKSFANWFDKM-SMLKDDTQTEDEIRNLDGMGSCICESLL 552

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +F+ +  N   V++L   V   I  H  N+   +  KK VFTGTL  I R +A+E + + 
Sbjct: 553 DFFSDSDNCNMVKSLSNHV--MITDHTVNIGGSLSGKKFVFTGTLLSITREEAKEIIKKA 610

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           G +V   +S++ D ++ G+  GSKL KA +LG+ I+ E+  +      NT
Sbjct: 611 GGIVVNSISKQIDYVVAGEKAGSKLAKANELGIAIIEEKTLIEFTNGNNT 660


>gi|27468507|ref|NP_765144.1| DNA ligase [Staphylococcus epidermidis ATCC 12228]
 gi|81843559|sp|Q8CRU0|DNLJ_STAES RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|27316054|gb|AAO05188.1|AE016749_134 DNA ligase [Staphylococcus epidermidis ATCC 12228]
          Length = 665

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 247/711 (34%), Positives = 396/711 (55%), Gaps = 61/711 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+   ++ P  
Sbjct: 1   MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GGE   S  KV H  P LSL   +N EDLRKF  RI     +     + +  E K
Sbjct: 60  --VRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDSIGKVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++      G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   +           LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRH 664
           V + +N      + +L++++S  ++    K + ++EIE       K +V TG L+++ R+
Sbjct: 553 VTYLEN----SDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRN 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +A E++   GA V++ +++ TDI+I G + GSKL KA++ G +I  E  F+
Sbjct: 609 EASEWLKMQGAKVTSSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFI 659


>gi|268323600|emb|CBH37188.1| DNA ligase [uncultured archaeon]
          Length = 667

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 249/699 (35%), Positives = 404/699 (57%), Gaps = 57/699 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L ++I YH+  YY   +P I D+EYD L    + +   +P+L     P+ P  +IG 
Sbjct: 14  IAQLREKIHYHNYRYYVLDEPEISDAEYDRLFVELEELERKYPELI---TPDSPTQRIGA 70

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +         H IP LSL  +     +R F  R+ R    ++   I + +EPKIDG  + 
Sbjct: 71  KPVAEFGTYKHRIPMLSLNSVNTEVAVRDFDERVRRMLGVEE---IEYVVEPKIDGLAME 127

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           + YE G F+  + RGDG +GE+++  ++ + T+P R+LS   P ++EVRGEV++  + F 
Sbjct: 128 LVYENGVFIVGSTRGDGKTGENITQNLKTVKTLPLRILSETAP-LLEVRGEVFMPVSKFK 186

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LND + A G + +ANPRNAA+G +R+L+     +R L+FF +G+G+T       Q+E+L
Sbjct: 187 ELNDLLGAKGDRMFANPRNAAAGSVRQLDSRVTASRPLDFFAYGIGRTEGKTFSTQWEVL 246

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             +  +GF V+  +R+   F  ++ Y++E+K  R  L Y+IDG+V KV+    Q++LG  
Sbjct: 247 MYLHKIGFKVSPLIRRFKVFEDVIKYHDEVKEKRDELDYEIDGIVVKVNGIEQQERLGLI 306

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           +RSPRW I++KF  ++  T + DI +Q+GRTG LTPVA L PV I G  ++ ATLHNE+ 
Sbjct: 307 SRSPRWAIAYKFPAREEFTTVNDIVVQVGRTGALTPVAILAPVQISGVTVSRATLHNENE 366

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++            +D+R+GD V+V+RAG+VIP+VV +I ++R    + F  P  CPIC 
Sbjct: 367 LR-----------RKDVRIGDTVVVERAGDVIPEVVSVIKSKRTGAEKEFRMPGRCPICG 415

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + V+     K G +V   RC  G++CSAQ  E +KHF S  A NI+GLG++ +      +
Sbjct: 416 ADVL-----KEGPIV---RCI-GVSCSAQLKEWIKHFASLRAMNIDGLGEKVIAQLCDRK 466

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                +   AD+F L +R+     ++      GD S  N+ +++ K ++ +L R I++LG
Sbjct: 467 ----MVSDAADLFFLTKRELLKLDRM------GDKSARNILNALEKSKHTTLSRLIYALG 516

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVGA  A  LA       NF+ E+ ++   + DD   L+ +P +G  +A++I+ F++ 
Sbjct: 517 IRHVGAHTASLLA------DNFS-ELESLRNASYDD---LVHIPEIGPEVAKSIILFFKQ 566

Query: 619 PRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                  + LL ++  +   +EK      + +E K  VFTG +  + R +A+  V +LG 
Sbjct: 567 ----GGTKDLLGKLERAGVWYEKKKAAAEARLEGKTFVFTGRIS-MPREEAKSLVERLGG 621

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            V++ +S+KTD ++ G+  GSK EKA++LGVKI+ E +F
Sbjct: 622 KVASSVSKKTDYVVAGEEAGSKREKAEKLGVKIIGESEF 660


>gi|293557127|ref|ZP_06675681.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039]
 gi|294614139|ref|ZP_06694060.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636]
 gi|291592989|gb|EFF24577.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636]
 gi|291600696|gb|EFF30994.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039]
          Length = 679

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/714 (34%), Positives = 398/714 (55%), Gaps = 63/714 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S   
Sbjct: 6   MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KV H IP  SL  +++ E+L  F  R+    QK     + +  E
Sbjct: 63  DSPTQRVGGKVLEGFEKVIHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  + L  P  IEVRGE 
Sbjct: 119 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+ + IT  R L+ F++ +     +
Sbjct: 177 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +   D      + AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 458 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSR----------SDYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660
            ++V ++ N      V  L+ E+  +    E         + V S  + K +V TG L +
Sbjct: 558 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTR 613

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           + R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q 
Sbjct: 614 LTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 667


>gi|325928155|ref|ZP_08189364.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118]
 gi|325541451|gb|EGD12984.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118]
          Length = 833

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 262/836 (31%), Positives = 424/836 (50%), Gaps = 169/836 (20%)

Query: 32  DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           +D  Y+Y    +P + D++YD L R  +A+  A P+LA ++ P     ++G        +
Sbjct: 19  EDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPT---QRVGHLAASRFAE 75

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H++P LSL   ++ E++ +F+ RI    ++ +     F+ EPK+DG  I++RYE G+F
Sbjct: 76  VRHALPMLSLGNAFSDEEVTEFVRRIS---ERLEVKQPLFSAEPKLDGLAISLRYENGEF 132

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V  A RGDG +GEDVSA +R +  IP R+     P+++EVRGEVY+ +  F A N +M A
Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRAAFEAYNAQMRA 192

Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265
            G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE    +    +L ++R  G
Sbjct: 193 QGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTHSAILAQLRAWG 252

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           FPV+  V       G+++YY  + + R  L +DIDG+VYK+D+ + Q+++G  +R+PRW 
Sbjct: 253 FPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN D I  LD  
Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ CP+C S++VR+ 
Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSQIVRE- 420

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------D 492
               G+ V   RC+G L C AQ+ E  +HFVSR A +++GLG++ +             D
Sbjct: 421 ---EGQAV--WRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVAD 475

Query: 493 FFFKSEDPAFSIRI-----PADIFTLQRRQQTST---TKIE-NILGFG-------DVSVT 536
            +  S D    +R+         F  + R+  ++    ++E +++G G       DV  T
Sbjct: 476 LYLLSVDQLLQLRLISTAESPHAFLREAREHLASGAYAQLETSVVGIGVDLAGERDVPQT 535

Query: 537 --------------------------NLYDSINKRRNISLERFIFSLGIRHV-------- 562
                                     NL ++I   R+ +LERF+F+LGI HV        
Sbjct: 536 WQADLLRAGLPRFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKAL 595

Query: 563 ------------------------GAEIARSLAKYY------------------------ 574
                                   G E+ARSL  ++                        
Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDTHP 655

Query: 575 --------LSY-----------------QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
                   LS+                 Q  A  +++  A       +L +  +   ++A
Sbjct: 656 PSPKLREALSFASVLEDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVVA 715

Query: 610 QAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            A++++   P N     A +  ++ V   + + +   +  ++ + +V TGTL  + R  A
Sbjct: 716 -ALLQWLDRPENTALANAAQQAMETVLARLPQADALQTGPLDGQTVVITGTLAALTRDAA 774

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L  + 
Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGDHG 830


>gi|229548668|ref|ZP_04437393.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200]
 gi|257420983|ref|ZP_05597973.1| DNA ligase [Enterococcus faecalis X98]
 gi|312953107|ref|ZP_07771956.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102]
 gi|229306184|gb|EEN72180.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200]
 gi|257162807|gb|EEU92767.1| DNA ligase [Enterococcus faecalis X98]
 gi|310628941|gb|EFQ12224.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102]
 gi|315153982|gb|EFT97998.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0031]
 gi|315156746|gb|EFU00763.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0043]
          Length = 676

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/713 (34%), Positives = 397/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ANSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE+  +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQAMV 668


>gi|78047224|ref|YP_363399.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123744002|sp|Q3BV14|DNLJ_XANC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78035654|emb|CAJ23345.1| DNA ligase [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 833

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 262/836 (31%), Positives = 423/836 (50%), Gaps = 169/836 (20%)

Query: 32  DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           +D  Y+Y    +P + D++YD L R  +A+  A P+LA ++ P     ++G        +
Sbjct: 19  EDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPT---QRVGHLAASRFAE 75

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H++P LSL   ++ E++ +F+ RI    ++ +     F+ EPK+DG  I++RYE G+F
Sbjct: 76  VRHALPMLSLGNAFSEEEVTEFVRRIS---ERLEVKQPLFSAEPKLDGLAISLRYENGEF 132

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V  A RGDG +GEDVSA +R +  IP R+     P+++EVRGEVY+ +  F A N +M A
Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRAAFEAYNAQMRA 192

Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265
            G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE    +    +L ++R  G
Sbjct: 193 QGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTHSAILAQLRAWG 252

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           FPV+  V       G+++YY  + + R  L +DIDG+VYK+D+ + Q+++G  +R+PRW 
Sbjct: 253 FPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN D I  LD  
Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ CP+C S++VR+ 
Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSQIVRE- 420

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------D 492
               G+ V   RC+G L C AQ+ E  +HFVSR A +++GLG++ +             D
Sbjct: 421 ---EGQAV--WRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVAD 475

Query: 493 FFFKSEDPAFSIRI-----PADIFTLQRRQQTST---TKIE-NILGFG-------DVSVT 536
            +  S D    +R+         F  + R+  ++    ++E +++G G       DV  T
Sbjct: 476 LYLLSVDQLLQLRLISTAESPHAFLREAREHLASGAYAQLETSVVGIGVDLAGERDVPQT 535

Query: 537 --------------------------NLYDSINKRRNISLERFIFSLGIRHV-------- 562
                                     NL ++I   R+ +LERF+F+LGI HV        
Sbjct: 536 WQADLLRAGLPRFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKAL 595

Query: 563 ------------------------GAEIARSLAKYY------------------------ 574
                                   G E+ARSL  ++                        
Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDTHP 655

Query: 575 --------LSY-----------------QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
                   LS+                 Q  A  +++  A       +L +  +   ++A
Sbjct: 656 PSPKLREALSFASVLEDMDIPKVTPVRAQQLAASVDSFAALRTAGADALQQAGVPAPVVA 715

Query: 610 QAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            A++++   P N     A +  ++ V   + + +   +  ++ + +V TGTL  + R  A
Sbjct: 716 -ALLQWLDRPENTALANAAQQAMETVLARLPQADALQTGPLDGQTVVITGTLAALTRDAA 774

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I  E + L  L  + 
Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWGEARLLAFLGDHG 830


>gi|169831769|ref|YP_001717751.1| NAD-dependent DNA ligase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|254781311|sp|B1I551|DNLJ_DESAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169638613|gb|ACA60119.1| DNA ligase, NAD-dependent [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 672

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 256/707 (36%), Positives = 376/707 (53%), Gaps = 47/707 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+AR     L +EI YHD  YY    P+I D+EYD L R   A+  A+P+L     P+ P
Sbjct: 4   EEARARAEELRREIEYHDHRYYVLDDPVIEDAEYDRLVRELVALETAYPELV---TPDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG        V H  P LSL   +N  DL  F  R+      +D   + + +E K 
Sbjct: 61  TQRVGGRPREGFVTVQHRAPMLSLANAFNAADLADFDRRVRTGLADED---VDYVVELKF 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  +++ YE G+ V  A RGDG +GE+++  +R I +IP R+     P +IEVRGEVY+
Sbjct: 118 DGVAVSLTYEHGRLVRGATRGDGVTGEEITPNLRTIRSIPLRLRQPGAPNVIEVRGEVYM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
            K  F  LN+     G   +ANPRNAA+G LR+L+P     R L+ +++G+G T  I   
Sbjct: 178 PKEAFARLNERREDAGLPLFANPRNAAAGSLRQLDPGITAERKLDIWLYGIGYTDGIVFG 237

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E L  +   GF VN   R  +T   +  +    +  R  LPY IDGLV KVD    Q
Sbjct: 238 RHSEALAWLGEQGFRVNPHTRIFSTLEEVERHLEHWREARFELPYVIDGLVLKVDRLDQQ 297

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   +SPRW +++K+  +QA T + DI I++GRTG+LTP A L PV + G  ++ A+
Sbjct: 298 ERLGTTLKSPRWAVAYKYPPEQAETTVEDIIIRVGRTGVLTPTAVLSPVRLAGTTVSRAS 357

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I+            +DIR+GD VL+ +AG++IP+++     +R     PF+ P 
Sbjct: 358 LHNEDLIR-----------EKDIRIGDVVLIHKAGDIIPEILGSRPEKRTGRETPFAMPV 406

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +VR      G++     C+  +AC A+    L HFVSR+AF I GLG   + 
Sbjct: 407 QCPECASLLVR----PEGEV--GVYCS-NVACPARLERSLLHFVSRNAFAINGLGPAVIQ 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +       +  PAD+FTL R +     +I      G  S  NL  +I   +  SL R
Sbjct: 460 QLLERR----LVADPADLFTLTREELVGLERI------GPKSADNLLKAIQNSKRNSLAR 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IFSLGIRHVG   AR LA+ + S       +  ++A   ++   L  VP +G  IA ++
Sbjct: 510 LIFSLGIRHVGERAARLLAERFGS-------LAGLMAAGREE---LEAVPEIGPKIADSV 559

Query: 613 VEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + F+   +N   V  L++  V+    R     +  +  K  V TGTL++  R +A   + 
Sbjct: 560 LNFFAREQNRRVVAKLVRAGVNTVADRPAAAGTGPLAGKTFVLTGTLEEFSRAEAAARIE 619

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +LG  V + +SR+TD +++G NPG K +KA +LGV I+ E +F  LL
Sbjct: 620 ELGGRVVSNVSRRTDYVVLGKNPGGKYDKAVKLGVNIIEEPEFKRLL 666


>gi|330685564|gb|EGG97210.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU121]
          Length = 668

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/703 (36%), Positives = 394/703 (56%), Gaps = 62/703 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P+ P  ++G
Sbjct: 10  ELHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIHIEEEHPEF---KTPDSPTVRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N EDLRKF  RI     +++   + +  E KIDG  +
Sbjct: 64  GEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RENIGKVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+ +  F+
Sbjct: 119 SLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYMPRKSFM 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A  Q   L
Sbjct: 177 NLNEEKEKNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSINDFTDFEATTQSGAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N+   + +   G++ Y  +  + R TLPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDQLGFKTNHERERVSDIDGVLKYIEKWTAERETLPYDIDGIVIKVNDLEQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+ CP C 
Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIDRRPEDAETYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++++
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQQLYEND 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L+        ++      G   V NL ++I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLEEEDLLPLERM------GSKKVENLLEAIKQAKSQSLEHLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + +R LA+ Y       + ++ ++    ++   LI +  +G  +AQ++V + +N
Sbjct: 509 IRHLGVKASRVLAEKY-------ETMDRLLTVTEEE---LIAIHDIGGKLAQSVVTYLEN 558

Query: 619 PRNICAVEALLKEVSPSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRHKAQEYVT 671
             +I A+   LK+    +    K V ++EIE       K +V TG L+++ R++A +++ 
Sbjct: 559 D-DIRALIQKLKD--KDVNMTYKGVKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASQWLQ 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             GA V+  +++ TDI+I G + GSKL KA++ G +I  EE+F
Sbjct: 616 MQGAKVTNSVTKSTDILIAGADAGSKLTKAEKFGTEIWTEEEF 658


>gi|307269776|ref|ZP_07551106.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248]
 gi|306513886|gb|EFM82488.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248]
          Length = 676

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/713 (34%), Positives = 397/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G   
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTG 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMV 668


>gi|297583057|ref|YP_003698837.1| DNA ligase [Bacillus selenitireducens MLS10]
 gi|297141514|gb|ADH98271.1| DNA ligase, NAD-dependent [Bacillus selenitireducens MLS10]
          Length = 668

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/710 (34%), Positives = 395/710 (55%), Gaps = 59/710 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  +K + +L + ++ +   YY   +P + D+EYD L +  + +  A P+L RS+ P+  
Sbjct: 5   QDVQKRIDTLTETVNDYAHHYYVLDQPKVPDAEYDRLLQELEELEAAHPELKRSDSPS-- 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI--FFTLEP 132
             ++GGE      KV H IP LSL   +N E+LR F  R+      +D   +   +++E 
Sbjct: 63  -ERVGGEPLDHFRKVQHDIPMLSLSNAFNEEELRDFDRRV------RDGLGVNPTYSVEL 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  IT++YE G+FV  A RGDG +GED++  ++ IP+IP  L L     +EVRGE +
Sbjct: 116 KIDGLAITLKYEAGEFVLGATRGDGTTGEDITRNLKTIPSIP--LKLKESVTLEVRGEAF 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + K  F  LN+     G   +ANPRNAA+G LR+L+P     R L+ FV+ +G+      
Sbjct: 174 MPKASFNRLNEAREEKGEALFANPRNAAAGSLRQLDPKIAAKRNLDMFVYSVGQIEGKTI 233

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E L  +  LGF +N   +  N    +V Y N     R  L Y+IDG+V KVD    
Sbjct: 234 DSHTETLDYVSKLGFKINPEAKHCNGIEEVVDYVNSWLDRRGDLDYEIDGIVIKVDSLDH 293

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  A+SPRW  + KF  ++  T+L+DI++ IGRTG++TP A LEPV++ G  +  A
Sbjct: 294 QEELGFTAKSPRWATAFKFPAEEVVTKLIDIELSIGRTGVVTPTAILEPVSVAGTTVQRA 353

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +D+++GDRV +K+AG++IPKVV+++  +R    + FS P
Sbjct: 354 SLHNEDLIR-----------QQDVKIGDRVTIKKAGDIIPKVVNVLTEQRDGSEEDFSMP 402

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C+S +VR      G++  A RC     C AQ  E L HF SRDA NI+GLG++ +
Sbjct: 403 EHCPACESELVR----IDGEV--ALRCVNP-ECPAQIREGLIHFASRDAMNIDGLGERVI 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                 E     +R  AD++ L++    +  ++      G+ S TNL ++I   ++ SLE
Sbjct: 456 TQLHSRE----LVRNVADLYRLEKEAIMALERM------GEKSATNLVEAIEATKSNSLE 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIR VG++ A++LA ++ +     +           D  +LI V  +GD +A +
Sbjct: 506 KLLFGLGIRFVGSKAAKTLAMHFETMDALMEA----------DKEALIAVDEIGDKMADS 555

Query: 612 IVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           IV  ++ P     + AL      +    P     E++  S +  K +V TG++++  R +
Sbjct: 556 IVMAFEQPGMKHLIGALKDLGVNMTYTGPKRITAEES-DSPLAGKTVVITGSMEQYSRKE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           A+  V   G  V+  +S+KTD++I G+  GSKL+KA +LG+++ +E +F+
Sbjct: 615 AKTEVEARGGKVTGTVSKKTDLVIAGEKAGSKLDKANELGIEVWDEARFI 664


>gi|15606063|ref|NP_213440.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5]
 gi|7673992|sp|O66880|DNLJ_AQUAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2983242|gb|AAC06838.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5]
          Length = 720

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 250/725 (34%), Positives = 402/725 (55%), Gaps = 51/725 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R++  ++ LS E+A+K    L + I YHD  YY  + P+I D +YD L R    I   +P
Sbjct: 19  RKIKDVKVLSFEEAKKLAEDLREVIRYHDYKYYVEANPVIPDYDYDRLFRALKEIEKKYP 78

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +L     P+ P  ++  E++     V H  P LSL+  ++ ++LR+F  R+    Q    
Sbjct: 79  ELI---TPDSPTQRVASEISGEFPTVKHYTPMLSLDNAYSEDELREFDRRVR---QITGL 132

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-- 181
             + + +EPK+DG  I + YE   FV  A RGDG  GED++  ++ I TIP     +   
Sbjct: 133 EVVEYAVEPKLDGAGIALVYENDLFVRGATRGDGEYGEDITNNLKTIKTIPLKAEFSRFG 192

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240
            ++ E+RGEV I K++F  LN E +  G  P+ANPRNAA+G +R+ +P ++  R L   V
Sbjct: 193 IKLAEIRGEVVIRKDEFQKLNKERMEEGLPPFANPRNAAAGSIRQKDPKEVAKRNLEAIV 252

Query: 241 HGLG--KTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           + L   +  E      YE L+ +  LGF  +    +       ++ Y  E +  R + PY
Sbjct: 253 YHLSYVEPPETEPPTHYESLKMLHTLGFKTLFKDTKVCKGIDEVIEYCKEWEKKRDSYPY 312

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KV++  L K LG  +  PRW I++KF  ++A T+L+D+  Q+GRTG +TPV +
Sbjct: 313 EIDGMVVKVNDRRLWKVLGYTSHHPRWAIAYKFKPRRAVTKLVDVVFQVGRTGTITPVGK 372

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV +GG  +++ +L NED+I+            +DIR+GD V+V+RAG+VIP VV+++
Sbjct: 373 LEPVELGGVTVSSVSLFNEDFIR-----------EKDIRIGDWVVVERAGDVIPYVVEVL 421

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
             +R  + +P  FP +CP C S +V+   P+      A RC   ++C AQ + R+KH+ S
Sbjct: 422 KEKRTGEEKPVEFPKYCPSCGSELVK--LPEE----VAIRCI-NISCPAQSVLRIKHWAS 474

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           RDA +I GLG   +   F +   A  +    D++ L+       T I  + GFG+ S  N
Sbjct: 475 RDAMDIRGLGDATIKLLF-NRGLAKDV---GDLYYLK------LTDILKLPGFGEKSAMN 524

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +I + +N  L+R ++ LGIR+VG   A+ +A+           IN++    +     
Sbjct: 525 LLKAIEESKNRPLDRVLYGLGIRYVGQTTAKKIAEI----------INSVWDLKDIPLEK 574

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           L+R+  +G  +A++I EF+  P+N+  ++ L K       + ++ V+  ++ K  VFTGT
Sbjct: 575 LMRLEGIGYKVARSIKEFFNIPQNLEVLKKLEKAGVNLAKKVKEKVADVLKGKTFVFTGT 634

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           L    R KA E V  LG   S  ++ KTD ++VG +PG +KL KA++ GVK + EE+F+ 
Sbjct: 635 LDCCSREKAGEIVEMLGGKFSNSVTSKTDYLVVGKDPGATKLSKAKKYGVKTITEEEFVN 694

Query: 717 LLQQY 721
           +++ Y
Sbjct: 695 MIKDY 699


>gi|172056504|ref|YP_001812964.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15]
 gi|254781332|sp|B1YJ17|DNLJ_EXIS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171989025|gb|ACB59947.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15]
          Length = 664

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 256/716 (35%), Positives = 406/716 (56%), Gaps = 63/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQAR E   L Q+++ +   YY   +P + DS YD L R    +  A P+L     P+ 
Sbjct: 2   IEQARIE--ELRQKLNQYSYEYYVQDQPTVPDSTYDQLLRELTELETAHPELI---TPDS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  KVTH +P LSL  +++  ++R+++ RI R   +    S  +  E K
Sbjct: 57  PTQRVGAAALDAFEKVTHDLPMLSLGNVFDETEIREWVARIERSLGR----STTYVAELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I+++YE G+ V  A RGDG  GE+++  +R I  +P  L  N  E +EVRGE Y+
Sbjct: 113 FDGLAISLKYEDGQLVRGATRGDGTVGENITQNLRTIKALPLRLRRN--ETVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K  F  LN +  A     +ANPRNAA+G LR+L+ +   +R L+ FV+G+G  + + A+
Sbjct: 171 PKQSFERLNADRAAREEALFANPRNAAAGSLRQLDSSITASRNLSLFVYGVGVNT-LSAR 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E + ++  LG P N  ++   T   I++Y       RS LPY+IDG+V KVD +  Q
Sbjct: 230 SHSEAMLQLAELGLPTNKEMQTCETVEEILAYIAHWTMERSNLPYEIDGIVLKVDRYDDQ 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  A+SPR+  ++KFA ++  T + ++D  +GRTG +TP AR  PV + G+ ++ AT
Sbjct: 290 EELGFTAKSPRFATAYKFAAEEVMTTVEEVDFSVGRTGKVTPRARFAPVVVAGSTVSYAT 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D+I             +DIR+ D+V++K+AG+VIP VV ++V+ER  + QP  FP+
Sbjct: 350 LHNADFIT-----------EKDIRLHDQVIIKKAGDVIPAVVSVVVSERTGNEQPIEFPA 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C+S +VR      G+  A  RC     C AQ +E + HFVSR A NI+GLG++ + 
Sbjct: 399 HCPACESELVR----LEGE--ADIRCVSP-ECPAQLVEGIIHFVSRQAMNIDGLGEKVVR 451

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++ E    +IR  AD++ L R +  +  ++      G+ SV NL  +I   +  SLER
Sbjct: 452 QLYEHE----AIRTLADLYRLDRDELLTYERM------GETSVDNLLTAIEASKQNSLER 501

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            +F LGIR VG + A  LA+ + S    AQ E  +I+A +            +G  IA +
Sbjct: 502 LMFGLGIRLVGQKAAYLLAERFDSLDGIAQAEYEDILAIDG-----------IGSKIADS 550

Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           + +++++P      +AL+K+++        +G+     ++ +  K +V TGTL+ ++R +
Sbjct: 551 VTKYFEHPE----AQALIKDLAELGLNQQFLGQRVDQSNAPLAGKTIVLTGTLESLKRSE 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           A + +  LGA V+  +S+KTDI++ G+  GSKL KA+ LG++I NE Q L  L +Y
Sbjct: 607 AGKRLELLGADVTGSVSKKTDILVAGEKAGSKLTKAESLGIEIWNETQLLEELAKY 662


>gi|319399869|gb|EFV88116.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis FRI909]
          Length = 665

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/707 (35%), Positives = 389/707 (55%), Gaps = 53/707 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+   ++ P  
Sbjct: 1   MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTV 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GGE   S  KV H  P LSL   +N EDLRKF  RI     +     + +  E K
Sbjct: 61  ---RVGGEAQSSFKKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDSIGQVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRESLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++      G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   +           LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALL-KEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E L  K V+ S   I   E +   +   K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIDGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+
Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFI 659


>gi|52079149|ref|YP_077940.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580]
 gi|52784516|ref|YP_090345.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580]
 gi|319647076|ref|ZP_08001302.1| DNA ligase [Bacillus sp. BT1B_CT2]
 gi|81386291|sp|Q65MR2|DNLJ_BACLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52002360|gb|AAU22302.1| DNA ligase [Bacillus licheniformis ATCC 14580]
 gi|52347018|gb|AAU39652.1| LigA [Bacillus licheniformis ATCC 14580]
 gi|317390900|gb|EFV71701.1| DNA ligase [Bacillus sp. BT1B_CT2]
          Length = 667

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 249/712 (34%), Positives = 401/712 (56%), Gaps = 54/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A++ +  L   I+ ++  Y+    P + DSEYD L +   A+    PDL   + P+ P
Sbjct: 4   EAAKRRVEQLHALINKYNYEYHTLDDPSVPDSEYDKLMKELIALEEEHPDL---KTPDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +  +  KV H  P LSL   +N EDLR F  R+ +         + + +E KI
Sbjct: 61  SQRVGGAVLDAFQKVQHKTPMLSLGNAFNEEDLRDFDRRVRQAV-----GDVEYNVEFKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  ++   IEVRGE ++ 
Sbjct: 116 DGLAVSLRYENGVFVRGATRGDGTTGEDITENLKTIRNIPLRMKRDLS--IEVRGEAFMP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN   I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+  + 
Sbjct: 174 KRSFELLNKARIERDEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + L  +  LGF  N+  ++ +T   ++    E+K+ R+ LPY+IDG+V KVD    Q+
Sbjct: 234 QSQGLDFLDELGFKTNHERKKCSTIEEVIEIVEELKTKRADLPYEIDGIVIKVDSLDQQE 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T LLDI++ +GRTG +TP A LEPV + G  +  A+L
Sbjct: 294 ELGFTAKSPRWAIAYKFPAEEVVTTLLDIELSVGRTGAVTPTAILEPVKVAGTTVQRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED IK            +DIR+ D+V+VK+AG++IP+VV+++V +R    + F+ P  
Sbjct: 354 HNEDLIK-----------EKDIRLLDKVVVKKAGDIIPEVVNVLVEQRTGKEKEFNMPKE 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ +  
Sbjct: 403 CPECGSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+ ED   ++   AD++ L R Q      + N+   G+ S  NL +SI K +  SLER 
Sbjct: 456 LFR-EDLVHNV---ADLYKLTREQ------LINLERMGEKSTDNLLNSIEKSKKNSLERL 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR +GA+ A++LA ++ +     +               LI V  +GD +A A+V
Sbjct: 506 LFGLGIRFIGAKAAKTLAMHFETLDKLKKATKE----------ELIEVDEIGDKMADALV 555

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQRHKAQE 668
            +++    +  ++ L +    ++ +  K  ++E  +     K +V TG L ++ R+ A+ 
Sbjct: 556 TYFEKEEILKLLDELEELGVNTVYKGPKKAAAEASDSYFAGKTIVLTGKLSEMSRNDAKA 615

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  ++  +S+KTD++I G+  GSKL KA+ L +++ +E + +  L++
Sbjct: 616 EIEALGGKITGSVSKKTDLVIAGEAAGSKLAKAEDLNIEVWDEARLISELKK 667


>gi|254832503|ref|ZP_05237158.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 10403S]
          Length = 671

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 257/711 (36%), Positives = 384/711 (54%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N EDL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+  +    
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  ++   + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKAIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        + + ND          +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKVADKETLTNIND----------IGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL+E+  +       G   +++S E      K +V TG L+K+ R+ A+
Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|320160951|ref|YP_004174175.1| DNA ligase [Anaerolinea thermophila UNI-1]
 gi|319994804|dbj|BAJ63575.1| DNA ligase [Anaerolinea thermophila UNI-1]
          Length = 674

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 260/710 (36%), Positives = 386/710 (54%), Gaps = 63/710 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E  +L+++I YHD  YY    P+I D+EYD L  R   I  A P+      P+ P  ++
Sbjct: 8   QEYENLKKQIHYHDYRYYVLDDPVISDAEYDRLILRLKQIEFAHPEWI---TPDSPSQRV 64

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF---FTLEPKID 135
           GG       KV H  P LSL   +   D+  +I RI     +K D  +    F LEPKID
Sbjct: 65  GGMPQDKFNKVRHPSPILSLANGFEKSDVLAWIERI-----RKLDARVATADFVLEPKID 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGE 190
           G  + + Y+ G FV  A RGDG  GED++A +R I ++P V+ +      +PE + VRGE
Sbjct: 120 GLTVVLTYQNGVFVQGATRGDGEVGEDITANLRTIRSLPLVIPVEQNNVPVPEWVVVRGE 179

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++   DF  LN  +   G K Y NPRN A+G LR+L+P+   +R +N FV+ +  +S  
Sbjct: 180 AFMFIKDFEELNKRLEQSGEKTYLNPRNTAAGSLRQLDPSLTASRPINIFVYAIVASSAP 239

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q+E LQ ++  GFPV + V+   +   ++   ++ +  R TLPY+ DG+V K+++ 
Sbjct: 240 LPQTQWEQLQTLKAWGFPVASDVQYCASVEEVLKGLDQWREKRDTLPYEADGVVIKINDL 299

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            L   LG   + PR  ++ KF  ++ STRLLDI + +GRTG+LTP A LEPV IGG ++ 
Sbjct: 300 ELASSLGYVGKDPRGALAFKFPAREISTRLLDIGVNVGRTGVLTPYAILEPVEIGGVIVK 359

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN D+I+            +DIR+GDRV+VKRAG+VIP V+  IV  R  D + F 
Sbjct: 360 QATLHNFDFIR-----------EKDIRIGDRVMVKRAGDVIPYVIGPIVELRTGDERVFI 408

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   V    +   G++  A  C   + C AQ +  ++HFVSR A +I GLG +
Sbjct: 409 PPEMCPACGQPV----SHVEGEV--AWYCL-NVTCPAQIIRNVEHFVSRGAMDIVGLGIK 461

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   +     F ++ PAD++ L      S   +  + GF D    N+  +I   R+  
Sbjct: 462 IVEQLVEK---GF-VQSPADLYFL------SKEDLLTLEGFADKKAENILQAIQNSRSRP 511

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R I +LGIR VG  +A  LAK++           N+ A +      L+ +  VG  IA
Sbjct: 512 LSRLITALGIRGVGEVMAGELAKHF----------KNLDALSKATVQQLMEIEGVGPNIA 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRH 664
           Q+IVE++ +  N    E L K     +   E+     +E+  L     V TGTL++  R 
Sbjct: 562 QSIVEWFTHSGN---QEFLRKLREAGVWPTEQTPVESVESLPLAGLTFVVTGTLKEFSRE 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             + Y+ +LGA V+  +SR T  ++VG+NPGSKLEKA+QLGV+I+ EE+ 
Sbjct: 619 GIKGYLERLGAKVTDSVSRNTSYLLVGENPGSKLEKARQLGVRIITEEEL 668


>gi|152974127|ref|YP_001373644.1| NAD-dependent DNA ligase LigA [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|190359228|sp|A7GKJ1|DNLJ_BACCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152022879|gb|ABS20649.1| DNA ligase, NAD-dependent [Bacillus cytotoxicus NVH 391-98]
          Length = 669

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/710 (35%), Positives = 399/710 (56%), Gaps = 57/710 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +++Q  +EL  L    +Y    Y+    P + D+EYD   +    +    P+    + P+
Sbjct: 5   AVQQRIEELRDLLNTFNYQ---YHVLDNPSVSDAEYDRNMQELIKLETENPEFITEDSPS 61

Query: 73  GPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
               ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 62  ---VRVGGAV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGVNVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  + RGDG +GED++  ++ I  IP  L L     +EVRGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGSTRGDGITGEDITQNLKTIKAIP--LRLQEEVTLEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G LR+L+P     R L+ FV+GL       
Sbjct: 173 YMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADIEGKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ITSHSEALDFLGELGFKTNPNRRICETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDDVT 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQERLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++ ++R    + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVVFDKRTGKEEAYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR L  +      A RC    AC AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPTCDSGLVR-LEEEV-----ALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD++ L + Q     +      FG+ S +NL  +I   +  SL
Sbjct: 455 ITQLFE----ANYIRTFADLYGLTKDQLLQLDR------FGEKSASNLVQAIEASKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+LA+++       + ++N++    ++   L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHF-------ETMDNLVKAGEEE---LKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEAL----LKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++ N   +  ++      +      I R + +N++S    K +V TG L+ + R +
Sbjct: 555 SIVTYFDNEDVLHLIQQFKDYGVNMTYKGIKRADLQNIASYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           A++ +  LG  V+  +S+ TD++I G+  GSKL +A++  ++I NEE+FL
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVIAGEAAGSKLAQAEKHNIEIWNEERFL 664


>gi|242241743|ref|ZP_04796188.1| DNA ligase [Staphylococcus epidermidis W23144]
 gi|242234833|gb|EES37144.1| DNA ligase [Staphylococcus epidermidis W23144]
          Length = 665

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/707 (35%), Positives = 389/707 (55%), Gaps = 53/707 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+   ++ P  
Sbjct: 1   MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTV 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GGE   S  KV H  P LSL   +N EDLRKF  RI     +     + +  E K
Sbjct: 61  ---RVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDSIGQVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRESLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++      G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKERSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   +           LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALL-KEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E L  K V+ S   I   E +   +   K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIDGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+
Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFI 659


>gi|223044011|ref|ZP_03614051.1| DNA ligase, NAD-dependent [Staphylococcus capitis SK14]
 gi|222442554|gb|EEE48659.1| DNA ligase, NAD-dependent [Staphylococcus capitis SK14]
          Length = 667

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 250/701 (35%), Positives = 386/701 (55%), Gaps = 58/701 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+   +   + P  ++G
Sbjct: 10  ELHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIDIEEKHPEYKTA---DSPTVRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N EDLRKF  RI     +++  ++ +  E KIDG  +
Sbjct: 64  GEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RENIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y+ G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+ +  F+
Sbjct: 119 SLKYQNGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYMPRQSFM 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A  Q   L
Sbjct: 177 NLNAEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFDATTQSGAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           Q++  LGF  N    +     G++ Y  +    R +L YDIDG+V KV++   Q+++G  
Sbjct: 237 QELDDLGFKTNQERERVADIDGVLDYIEKWTEKRESLSYDIDGIVIKVNDLDQQEEMGYT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  ++LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVSKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+ CP C 
Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPKDAKTYHMPTLCPSCD 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   +++E
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQQLYENE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L+        ++      G+  V NL  +I K ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLKEEDLLPLERM------GNKKVENLLAAIEKAKDNSLEHLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ LA+ Y +         N+          L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKASQVLAEKYETMDRLL----NVTEE------ELVAIHDIGDKLAQSVVTYLEN 558

Query: 619 PRNICAVEALLKEVS-----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            ++I A+   LK+ +       I   E     E   K +V TG L+++ R +A +++   
Sbjct: 559 -QDIRALIQKLKDKNVNMNYKGIKTTEIEGHPEFNGKTIVLTGKLEQMTRSEATQWLEMQ 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           GA V++ +++ TDI+I G + GSKL KA++ G +I  E++F
Sbjct: 618 GAKVTSSVTKSTDIVIAGADAGSKLAKAEKFGTEIWTEDEF 658


>gi|255026038|ref|ZP_05298024.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-003]
          Length = 671

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 258/711 (36%), Positives = 382/711 (53%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N EDL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+  +    
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKKCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL+E+  +       G   +++S E      K +V TG L+K+ R+ A+
Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|253729682|ref|ZP_04863847.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253726568|gb|EES95297.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 667

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/702 (35%), Positives = 386/702 (54%), Gaps = 58/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C 
Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G ++++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKVSQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558

Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +I A+   LK+     +   I   +     E   K +V TG L ++ R++A +++   
Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+
Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659


>gi|251809892|ref|ZP_04824365.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874546|ref|ZP_06283431.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135]
 gi|293367782|ref|ZP_06614431.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|251806557|gb|EES59214.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296685|gb|EFA89194.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135]
 gi|291318121|gb|EFE58518.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329734727|gb|EGG71033.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU045]
 gi|329734798|gb|EGG71103.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU028]
          Length = 665

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 247/711 (34%), Positives = 395/711 (55%), Gaps = 61/711 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+   ++ P  
Sbjct: 1   MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GGE   S  KV H  P LSL   +N EDLRKF  RI     +     + +  E K
Sbjct: 60  --VRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDSIGKVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++      G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   +           LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRH 664
           V + +N      + +L++++S  ++    K + ++EIE       K +V TG L+++ R+
Sbjct: 553 VTYLEN----SDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRN 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +A E++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+
Sbjct: 609 EASEWLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFI 659


>gi|300087757|ref|YP_003758279.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527490|gb|ADJ25958.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 687

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/720 (35%), Positives = 401/720 (55%), Gaps = 59/720 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++A+K + +L ++I++H+  YY   +P I D EYD L R    + + FP+LA  E P  
Sbjct: 1   MDEAKKRIDTLRKQITHHNYLYYVKDEPEISDQEYDILFRELQILENEFPELASDESPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
               +G + + +  ++ H  P LSL   ++ E+L+ +  RI +    +   ++ F  E K
Sbjct: 60  --KIVGAKPSKTFSRIKHVKPLLSLANAFSHEELKVWYERIIKSLSPE---TVEFVCEHK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + + Y +GK V  A RGDG +GEDV+  ++ I ++P  ++ N+P+  EVRGEV++
Sbjct: 115 IDGLAVAVAYHEGKLVTGATRGDGETGEDVTNNLKTIYSLPHTVADNVPDKFEVRGEVFL 174

Query: 194 SKNDFLALNDEMIAVGRKP-YANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-F 250
             ++FL LN +M    R P +ANPRNAA+G +R+L+P     R L+ F++GLG      F
Sbjct: 175 PTDNFLRLN-QMRLKQRLPLFANPRNAAAGSVRQLDPNVTAQRPLDIFIYGLGWAEPADF 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   ++ LQK+  +GF +N   R  +T   I SYY E    R  LPY+ DG+V KV+++S
Sbjct: 234 ADNHWDTLQKLGEIGFKINPNNRLCHTLEDIQSYYQEWLGKRDQLPYEADGIVIKVNDYS 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG+ AR PRW I+ KF   QA TRL DI I +GRTG L P A LEPV +GG  I  
Sbjct: 294 QQESLGQIAREPRWAIAFKFPAPQAITRLKDIGISVGRTGTLNPFAILEPVKLGGVTIQR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNE+ I+            +DIR+GD+V+V+RAG+VIP++V  I+ +    A+ FS 
Sbjct: 354 ATLHNEEDIR-----------RKDIRIGDKVIVQRAGDVIPQIVRPIIEDSSNRAEVFSI 402

Query: 431 PS---------FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                       CP+C + V R      G+++  + C    AC AQ  E+L+HFVS+   
Sbjct: 403 TEKLKGPDSKPHCPVCNAVVTR----TAGEVM--YYCP-NTACPAQLAEKLEHFVSKSGM 455

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I G+G ++L   F +E     I+  AD++ L+      T  +    G  + S   L  S
Sbjct: 456 DIRGMG-EKLSTAFLNEG---LIKDVADLYNLK------TEHLVGREGMKEKSAEKLITS 505

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I+  +N  L   I++LGIRH+GAE A+SLA+ + S    A+               LI +
Sbjct: 506 ISNSKNRPLHNVIYALGIRHIGAENAQSLAREFGSLSELAKA----------SLERLISI 555

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           P +G  IA +++ ++  P N   V  L  + E    +  +    SS I  K++V TG+L+
Sbjct: 556 PGIGVKIADSMLNYFSEPHNQKIVSRLNEILETPTMLPANNAQFSSLISGKEVVITGSLK 615

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + RH A E + + G +  A ++ KT  ++ G+  G+K++KA++  + I++E+  L +++
Sbjct: 616 SMTRHDAWEMIRRAGGIPKADITTKTSYLVAGEKGGTKIKKAKEGKIPIISEDDLLAMVE 675


>gi|302871618|ref|YP_003840254.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47]
 gi|302574477|gb|ADL42268.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47]
          Length = 673

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/703 (35%), Positives = 392/703 (55%), Gaps = 49/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  +
Sbjct: 6   KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVL---PDSPTQR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     +V H +P LSL  ++N  +L  F  R+       D +   + +E KIDG 
Sbjct: 63  VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTLDFD---YVVEYKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  ++   I VRGEV++ K++
Sbjct: 120 SVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLRLKEDVS--IVVRGEVFMPKDE 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  + +  E   +   E
Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNV-QWCEKELETHAE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +R LGF V+                 +++  R  LP++IDG V K+++  L+   G
Sbjct: 237 ALEFLRHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQEKIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCT G+ C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMIVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+         + N+  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 RG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S       I+++     +  LSL   P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEEQLLSL---PDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E  LK    +    +K  S  ++    V TG L K  R++A+E +  LGA 
Sbjct: 559 KQEQTRHLIER-LKAAGVNTVSEKKAKSDILKGYTFVLTGALSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVIVGQDPGSKYTKAQQLGVKILNEEDFERLVK 660


>gi|315303635|ref|ZP_07874170.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596]
 gi|313627998|gb|EFR96596.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596]
          Length = 678

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 259/720 (35%), Positives = 390/720 (54%), Gaps = 66/720 (9%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ ++  +EL ++  + SY    YY    P + D+EYD   +    I  A P+     
Sbjct: 6   EEMADKKRYEELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLQIEAAHPEWVT-- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P  P N++GGE+     KV H  P LSL   +N +DL  F  RI    + K    + + 
Sbjct: 61  -PESPSNRVGGEVLEGFQKVAHDTPMLSLANAFNKDDLADFDRRI----RDKVGEDVAYM 115

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  ++++YE GK+   A RGDG +GED++A +R I +IP  + L     IEVRG
Sbjct: 116 CELKIDGLAVSLQYENGKYKQGATRGDGTTGEDITANLRTIRSIP--MKLQKSYSIEVRG 173

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTS 247
           E ++ K  F  LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    
Sbjct: 174 EAFMPKRSFQKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFG 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+        L  +  LG  VN   R  +T   + +Y +E    R+ L YDIDG+V K++
Sbjct: 233 EMGVTTHSAGLAMLETLGLKVNKERRLCSTLEEVYAYIDEWTEKRAGLAYDIDGIVLKLN 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q+Q+G  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  
Sbjct: 293 DLEQQRQMGTTAKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVVTPTAVLEPVRVAGTT 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHNED I             +DIR+GD VL+K+AG++IP+V+  I  ER  D +P
Sbjct: 353 VGRASLHNEDLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSIAEERTGDEEP 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG
Sbjct: 402 FHMPANCPTCGSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLG 454

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +   F        I+  AD+F L      S  K+  +   G+ SVTNL  SI + + 
Sbjct: 455 EKVIIQLFTH----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEQSKQ 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLE+ +F LGIRHVGA+ A+SLA Y+ +                 D  +L R+  +G+ 
Sbjct: 505 NSLEKLLFGLGIRHVGAKAAKSLAIYFETMDKLKLA----------DKETLTRINDIGEK 554

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTL 658
           +A +IV ++ N      V  LL E+  +       G    ++S E      K +V TG L
Sbjct: 555 MADSIVTYFANEE----VHNLLDELKRAGVNMTYTGPKLDDMSEEELVFAGKTVVLTGKL 610

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R+ A+  +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +E   +  L
Sbjct: 611 EQLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYL 670


>gi|117927902|ref|YP_872453.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B]
 gi|166215382|sp|A0LSQ7|DNLJ_ACIC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117648365|gb|ABK52467.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B]
          Length = 695

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/720 (35%), Positives = 382/720 (53%), Gaps = 53/720 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I A + + AR+  + L +EI  H   YY    P I D+EYDAL R  + I +A+P+L   
Sbjct: 9   IPASAADAARRH-AELVKEIEEHAYRYYVLDAPTISDAEYDALMRELEEIENAYPEL--- 64

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  K+ G        V H    LSL+ ++   +LR +I R+    +K+      +
Sbjct: 65  RTPDSPTQKVQGAPAAHFAPVEHLERMLSLDNVFTEGELRAWIARV----EKEVGTDAAY 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIE 186
             EPK+DG  + + YE G  V  A RGDG  GEDV+A I+AI  +P  L    N+P ++E
Sbjct: 121 LCEPKVDGLAVDLVYEDGVLVRGATRGDGRVGEDVTANIKAIRNVPHRLHRDGNLPALLE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           VRGEVY    DF  LN  ++A G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G 
Sbjct: 181 VRGEVYFPVADFAELNAGLVAAGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGIGA 240

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              + A  Q E    +   G PV+   + A T   I+ Y       R  L ++IDG+V K
Sbjct: 241 HQGLAAARQSEAYVALAAWGLPVSERAKVATTTKEILDYIAYYAEHRHDLEHEIDGVVVK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+F+LQ++LG  A++PRW +++K+  ++ +T+LLDI + +GRTG +TP A +EPV + G
Sbjct: 301 VDQFALQRRLGATAKAPRWAVAYKYPPEEVTTKLLDIQVNVGRTGRVTPFAVMEPVRVAG 360

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +TNATLHN D IK         R G  + +GD V+V++AG+VIP+VV  +V  R    
Sbjct: 361 STVTNATLHNADEIK---------RKG--VLIGDTVVVRKAGDVIPEVVGPVVALRDGSE 409

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F FPS CP C + +VR+     G  +   RC    +C AQ  ERL H  SR A +IE 
Sbjct: 410 REFVFPSHCPACGTPLVRE---NGGVDI---RCPNARSCPAQLRERLFHIASRGALDIES 463

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +  +   +S+  A       D+F L   +  +        G    +   L +++   
Sbjct: 464 LGYEAANALLESKLLADE----GDLFLLTPEKLRTVPFFTKKDGELSANAVKLLENLESA 519

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L R + +L IRHVG   AR+LA+          E  +I A  N     L  V  VG
Sbjct: 520 KTRPLWRVLVALSIRHVGPTAARALAR----------EFGSIDAIRNASVDELAAVEGVG 569

Query: 606 DIIAQAI-----VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
            +IA++I     V+++Q       + A        +   +++ +  +    +V TGTL +
Sbjct: 570 RVIAESIRDWFAVDWHQE------IVAKWSAAGVRMAEEQRSAAKPLAGITVVVTGTLSR 623

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R  A E +   G   +  +S+KTD ++VG+NPGSK +KA+QLG+ I++EE F  LL +
Sbjct: 624 WSRDSAIEAIQDAGGRAAGSVSKKTDFVVVGENPGSKYDKARQLGIPILDEEGFATLLTK 683


>gi|268316781|ref|YP_003290500.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252]
 gi|262334315|gb|ACY48112.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252]
          Length = 712

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/722 (35%), Positives = 383/722 (53%), Gaps = 54/722 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +EA+  ++A    + L + ++ H   YY    P+I D++YD L +    +   FP+L   
Sbjct: 30  LEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV-- 87

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI-- 126
             P+ P  ++GG       KV H  P LSL   +  ED+R +  R  R   ++    +  
Sbjct: 88  -TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAERLGQPVQP 146

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----- 181
             T E KIDG  + + YE G     A RGDG  GE+V+  +R IP IP  + ++      
Sbjct: 147 AVTAELKIDGLAMALTYENGVLTVGATRGDGIEGENVTQNVRTIPAIPLRIPVDPAVGPP 206

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFV 240
           P  +EVRGEVY+ K DF  LN+++ A G +P+ANPRNAA+G +R+LNP     R L+FF 
Sbjct: 207 PTRLEVRGEVYMRKRDFERLNEQLQARGERPFANPRNAAAGSVRQLNPQVTALRPLSFFA 266

Query: 241 HGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           +G+G          QYE+LQ +  LGFPVN   R+      ++ Y       R  L Y+I
Sbjct: 267 YGIGPVEGAEVPDSQYEVLQWLGRLGFPVNEHARRFEHLDDVLEYCRYWTEHRDELDYEI 326

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V K+D    Q  LG  + +PRW +++KF  ++A TRLLDI + +GRTG++ PVA LE
Sbjct: 327 DGVVLKIDHRPWQALLGAISNAPRWAVAYKFPAREAITRLLDIMVSVGRTGVVKPVAVLE 386

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  ++ ATLHNEDY++            RDIR+GD V+V RAG+VIP+VV  +V 
Sbjct: 387 PVEVGGVTVSQATLHNEDYVR-----------SRDIRIGDLVVVIRAGDVIPQVVRPVVE 435

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R  + +P+  P  CP C S++VR         VA+        C AQ +  L+HF  RD
Sbjct: 436 ARTGNERPWRMPERCPSCGSQLVRLPGEADYYCVASD-------CPAQFVRLLEHFAGRD 488

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEG+G Q      +S      +R  +D++      +     +  + GF +    NL 
Sbjct: 489 AMDIEGMGSQVARQLAES----GLVRRLSDLY------RLKLEDLLKLEGFAETRARNLL 538

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +   L R +F LGIRHVG   A  L + + S       I+ + A   D+  +L 
Sbjct: 539 RAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFAS-------IDELAAATIDELAAL- 590

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTG 656
               VG I A++I  +++   N   +E  LKE+  +  R         S +  K  V TG
Sbjct: 591 --EGVGPITAESIANWFRVEDNRRLIEE-LKELGVNTQRLPEEAPAAESPVRGKTFVLTG 647

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L  + R +A+E + + G  V++ +SR TD ++VG+NPGSK ++A+QLG+ +++E+  L 
Sbjct: 648 ALPHLTRKEAEELIKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLGIPMLDEDGLLR 707

Query: 717 LL 718
           LL
Sbjct: 708 LL 709


>gi|315660157|ref|ZP_07913014.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590]
 gi|315494838|gb|EFU83176.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590]
          Length = 667

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/701 (35%), Positives = 388/701 (55%), Gaps = 56/701 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+   ++ P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTTDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N EDL++F  RI     +     + +  E KIDG  +
Sbjct: 64  GEAQSSFEKVRHDTPMLSLGNAFNEEDLKRFDQRI-----RDHIGEVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++YE GKFV    RGDG +GED++  +R I  IP  L L  P   EVRGE Y+ +  F+
Sbjct: 119 SLKYENGKFVQGLTRGDGTTGEDITENLRTIHAIP--LKLKEPLNFEVRGEAYMPRASFM 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
           +LN +      +P+ANPRNAA+G LR+L+      R L+ F++ +   S+  A  Q + L
Sbjct: 177 SLNKQKEKNNEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFSDFNATTQSDAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  NN     +   G+++Y  +  + R +L YDIDG+V KV++ + Q+++G  
Sbjct: 237 DELDRLGFKTNNERECVSDIDGVLAYIEKWTAKRESLAYDIDGIVIKVNDLAQQEEMGYT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  TRLLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTRLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I+  R  DA+ +  P+ CP C 
Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIERRPNDAETYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            ++VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++ E
Sbjct: 406 HKLVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQHE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I+K ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLERM------GKKKVENLLQAIDKAKSNSLEHLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+GA+ +  LA+ Y       + I  ++    D+   LI +  +GD +AQ++V + +N
Sbjct: 509 IRHLGAKASYVLAEKY-------ETIERLLTVTEDE---LISIHDIGDKLAQSVVTYLEN 558

Query: 619 PRNICAVEALL-KEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
                 +  L  K+V+ +   +   E     E ++K +V TG L+++ R +A +++   G
Sbjct: 559 EDIQSLISKLANKDVNMTFKGVKISELAGHPEFQDKTIVLTGKLEQMTRKEAADWLQLQG 618

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           A V+  +++ TD++I G++ GSKL KAQ+ G +I +E  F+
Sbjct: 619 AKVTNSVTKNTDLVIAGEDAGSKLTKAQKFGTEIWSESDFI 659


>gi|1352292|sp|P49421|DNLJ_RHOMR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|607820|gb|AAA93198.1| DNA ligase [Rhodothermus marinus]
          Length = 712

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/722 (35%), Positives = 383/722 (53%), Gaps = 54/722 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +EA+  ++A    + L + ++ H   YY    P+I D++YD L +    +   FP+L   
Sbjct: 30  LEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV-- 87

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI-- 126
             P+ P  ++GG       KV H  P LSL   +  ED+R +  R  R   ++    +  
Sbjct: 88  -TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAERLGQPVQP 146

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----- 181
             T E KIDG  + + YE G     A RGDG  GE+V+  +R IP IP  + ++      
Sbjct: 147 AVTAELKIDGLAMALTYENGVLSVGATRGDGIEGENVTQNVRTIPAIPLRIPVDPAVGPP 206

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFV 240
           P  +EVRGEVY+ K DF  LN+++ A G +P+ANPRNAA+G +R+LNP     R L+FF 
Sbjct: 207 PTRLEVRGEVYMRKRDFERLNEQLQARGERPFANPRNAAAGSVRQLNPQVTALRPLSFFA 266

Query: 241 HGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           +G+G          QYE+LQ +  LGFPVN   R+      ++ Y       R  L Y+I
Sbjct: 267 YGIGPVEGAEVPDSQYEVLQWLGRLGFPVNEHARRFEHLDDVLEYCRYWTEHRDELDYEI 326

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V K+D    Q  LG  + +PRW +++KF  ++A TRLLDI + +GRTG++ PVA LE
Sbjct: 327 DGVVLKIDHRPWQALLGAISNAPRWAVAYKFPAREAITRLLDIMVSVGRTGVVKPVAVLE 386

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  ++ ATLHNEDY++            RDIR+GD V+V RAG+VIP+VV  +V 
Sbjct: 387 PVEVGGVTVSQATLHNEDYVR-----------SRDIRIGDLVVVIRAGDVIPQVVRPVVE 435

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R  + +P+  P  CP C S++VR         VA+        C AQ +  L+HF  RD
Sbjct: 436 ARTGNERPWRMPERCPSCGSQLVRLPGEADYYCVASD-------CPAQFVRLLEHFAGRD 488

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEG+G Q      +S      +R  +D++      +     +  + GF +    NL 
Sbjct: 489 AMDIEGMGSQVARQLAES----GLVRPLSDLY------RLKLEDLLKLEGFAETRARNLL 538

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +   L R +F LGIRHVG   A  L + + S       I+ + A   D+  +L 
Sbjct: 539 RAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFAS-------IDELAAATIDELAAL- 590

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTG 656
               VG I A++I  +++   N   +E  LKE+  +  R         S +  K  V TG
Sbjct: 591 --EGVGPITAESIANWFRVEDNRRLIEE-LKELGVNTQRLPEEAPAAESPVRGKTFVLTG 647

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L  + R +A+E + + G  V++ +SR TD ++VG+NPGSK ++A+QLG+ +++E+  L 
Sbjct: 648 ALPHLTRKEAEELIKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLGIPMLDEDGLLR 707

Query: 717 LL 718
           LL
Sbjct: 708 LL 709


>gi|47569950|ref|ZP_00240615.1| DNA ligase, NAD-dependent [Bacillus cereus G9241]
 gi|47553396|gb|EAL11782.1| DNA ligase, NAD-dependent [Bacillus cereus G9241]
          Length = 615

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/656 (37%), Positives = 374/656 (57%), Gaps = 55/656 (8%)

Query: 68  SEDPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           SED   P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++
Sbjct: 2   SEDS--PSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANV 55

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +  E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E
Sbjct: 56  RYICELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLE 113

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
            RGE Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL  
Sbjct: 114 ARGEAYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLAN 173

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             E       E L  +  LGF  N   R   T   +++Y  E +  RS L Y+IDG+V K
Sbjct: 174 VEEKTIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRSHLDYEIDGIVIK 233

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G
Sbjct: 234 VDDVALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAG 293

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++  A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + 
Sbjct: 294 TIVRRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEE 342

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + +  P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+G
Sbjct: 343 EEYHMPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDG 395

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ +   F ++     IR  AD+++L + Q     +      FG+ S TNL  +I   
Sbjct: 396 LGERVITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENS 445

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SLER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G
Sbjct: 446 KENSLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKAINE----------IG 495

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQ 659
           + +AQ++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+
Sbjct: 496 EKMAQSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLE 554

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            + R +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 555 VMGRSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 610


>gi|57867376|ref|YP_189011.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A]
 gi|81674000|sp|Q5HN30|DNLJ_STAEQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57638034|gb|AAW54822.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A]
          Length = 665

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 247/711 (34%), Positives = 395/711 (55%), Gaps = 61/711 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+   ++ P  
Sbjct: 1   MQGVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GGE   S  KV H  P LSL   +N EDLRKF  RI     +     + +  E K
Sbjct: 60  --VRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDSIGKVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++      G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   +           LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRH 664
           V + +N      + +L++++S  ++    K + ++EIE       K +V TG L+++ R+
Sbjct: 553 VTYLEN----SDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRN 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +A E++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+
Sbjct: 609 EASEWLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFI 659


>gi|217964094|ref|YP_002349772.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23]
 gi|254781360|sp|B8DFG5|DNLJ_LISMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217333364|gb|ACK39158.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23]
 gi|307571338|emb|CAR84517.1| DNA ligase, NAD-dependent [Listeria monocytogenes L99]
          Length = 671

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 258/711 (36%), Positives = 382/711 (53%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N EDL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+  +    
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL+E+  +       G   +++S E      K +V TG L+K+ R+ A+
Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|290893414|ref|ZP_06556399.1| DNA ligase [Listeria monocytogenes FSL J2-071]
 gi|290557065|gb|EFD90594.1| DNA ligase [Listeria monocytogenes FSL J2-071]
          Length = 671

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 258/711 (36%), Positives = 383/711 (53%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N EDL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+  +    
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER  + +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGNEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL+E+  +       G   +++S E      K +V TG L+K+ R+ A+
Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|296132371|ref|YP_003639618.1| DNA ligase, NAD-dependent [Thermincola sp. JR]
 gi|296030949|gb|ADG81717.1| DNA ligase, NAD-dependent [Thermincola potens JR]
          Length = 665

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/700 (34%), Positives = 379/700 (54%), Gaps = 47/700 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A K ++ L ++I  H+  YY   +P I D+EYD L R    +   +PDL     P+ P  
Sbjct: 6   AAKRINELRKQIEEHNYYYYVLDRPRITDAEYDRLMRELTELEQQYPDLV---TPDSPTQ 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG        V H  P LSL   ++  DL  F  R+           + + +E KIDG
Sbjct: 63  RVGGAPAQGFQSVRHLAPMLSLSNAFSAADLLDFDKRVRNGLAGA---RVEYVVELKIDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++ YE G+FV  A RGDG  GED++  ++ I +IP  L  ++ E++EVRGE Y+ K 
Sbjct: 120 LAVSLLYENGRFVRGATRGDGEVGEDITQNLKTIKSIPLRLRQDL-ELLEVRGEAYMPKK 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQ 254
           +F  +N+     G   +ANPRNAA+G LR+L+P     R L+ F++ LG    +   K  
Sbjct: 179 EFARVNEAREEAGEPLFANPRNAAAGSLRQLDPAVTAERSLDIFLYALGAVQGQAPVKTH 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  ++ LGF +N  +      + ++ Y       R  LPY+IDG+V KV+  + Q  
Sbjct: 239 LEGLHLLKDLGFRINPNIVLLPNINEVIDYCQNWTEKRHDLPYEIDGMVIKVNSLAQQAA 298

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW I++KF  +QA T++  I +++GRTG+LTP A LEPV + G+ I++ATLH
Sbjct: 299 LGFTSKSPRWAIAYKFPAEQAVTKVKRIYVRVGRTGVLTPTAELEPVRVAGSTISSATLH 358

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I+            +DIR+GD V++ +AG+VIP++++++  +R    Q F  P+ C
Sbjct: 359 NEDIIR-----------EKDIRIGDTVIIHKAGDVIPEIIEVVKEKRTGQEQEFFMPAEC 407

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C   V +      G++  A RC     C  +  E L HFVSRDA +IEGLG   +D  
Sbjct: 408 PVCHGPVRK----PAGEV--AVRCVNK-DCPGRGREGLIHFVSRDAMDIEGLGPAVIDQL 460

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                 A  ++  AD++ L         K+E +   G  SV NL ++I + +   L   I
Sbjct: 461 LT----AGLVKDAADLYYL---NAEDLIKLERM---GKKSVENLLNAIERSKQKDLASLI 510

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIRHVGA   + LA ++ S     +               L  +P +G  +A++IV 
Sbjct: 511 FALGIRHVGARAGKILAAHFGSMDRLKEARQE----------ELTAIPEIGPKMAESIVA 560

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++++P ++  +E L            +     +E K  V TG L+K  R +AQE + +LG
Sbjct: 561 YFRDPAHLRLIERLRGAGVKMTQDIPERGERPLEGKTFVLTGALEKYSRKEAQELIEKLG 620

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             VS+ +S+KTD ++ G +PGSKLEKA+QLG+ +++E+ F
Sbjct: 621 GKVSSSVSKKTDYVLAGADPGSKLEKARQLGITVISEDDF 660


>gi|282889962|ref|ZP_06298497.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500155|gb|EFB42439.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 668

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/709 (33%), Positives = 400/709 (56%), Gaps = 49/709 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  Q+ +EL +   +I  H+  YY   +P+I D E+D L  + + +    P+   S  P 
Sbjct: 5   SSHQSYQELCN---QIWSHNKAYYVDHRPVISDEEFDHLMHQLEQMEKEHPEWISSASPT 61

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++G  +      V H  P LSL   ++ ++++ FI R+ +  + +D   + F+ E 
Sbjct: 62  ---QRVGEMLTEGFQTVAHRTPMLSLANSYSKDEVQDFIHRVKKLTRSQD---VAFSCEL 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  I+ ++EKG FV    RGDG  G+D++  +R +   P +++  + P+ +EVRGE+
Sbjct: 116 KMDGIAISAQFEKGIFVRGITRGDGKKGDDITQNLRTVAAFPLQLIGPSAPDFLEVRGEI 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIF 250
           ++ K  F  LN E    G   +ANPRNAA+G L+ L+P +  R  L+   +G+G+ S+  
Sbjct: 176 FMPKQVFQKLNAEKELEGEDLWANPRNAAAGSLKLLDPNETRRRKLDVVFYGIGQDSQDA 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q+     ++  G P+ + V + +T   I  +  +++++R++LP++IDG+V K+D  +
Sbjct: 236 LTSQFACHALLKSYGLPILHQVEKCHTLEEIWEFVEKVRTLRASLPFEIDGVVVKLDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            QK+LG   ++PRW +++KFA +QA T +  I +Q+GRTG+LTPVA L+PV + G+ I  
Sbjct: 296 EQKRLGSTGKNPRWAVAYKFAAEQAETDIYSITVQVGRTGVLTPVAELKPVFLAGSTIAR 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNE+         +V+R  +DIR GD V++++ G+VIPKVV +  ++R  D+ P+  
Sbjct: 356 ATLHNEE---------EVLR--KDIREGDSVIIEKGGDVIPKVVSVNFDKRKSDSHPWKM 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + V R ++        A +C   L C  QQL RL +F  + A +IE +G++ 
Sbjct: 405 PTHCPSCGALVARSVDE------VAVKCPNTLHCPEQQLRRLIYFAGKFAMDIEHMGEKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   +     F ++ P+DI+ L   Q      +  + GF   SV NL  SI K +++S 
Sbjct: 459 VEQLVRL---GF-VKRPSDIYALTSEQ------LFQLEGFKTKSVENLITSIEKSKDVSF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI +LGI+HVG   A  LAK        A  ++ ++    ++   L+++  +G+ +A 
Sbjct: 509 SRFIMALGIKHVGEGTAELLAKR-------AGNVHILMQMTTEE---LLQIEGIGEKVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           AIVE++ + RN   ++ LL+  V P   +   +     + K  V TGTL++  R  A   
Sbjct: 559 AIVEYFADARNQEEIQLLLQRGVLPQEVKSISHKGHPFDAKTFVLTGTLKQYTRPAAATL 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + G  V+  +S KTD ++ G++PGSKL+KA+ L V+I+ EE+F  +L
Sbjct: 619 IKERGGKVTNSVSSKTDYLLAGEDPGSKLDKAKSLQVRILTEEEFQAML 667


>gi|319655032|ref|ZP_08009103.1| DNA ligase [Bacillus sp. 2_A_57_CT2]
 gi|317393299|gb|EFV74066.1| DNA ligase [Bacillus sp. 2_A_57_CT2]
          Length = 668

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 396/712 (55%), Gaps = 57/712 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + ++ A K +  L   ++ ++  Y+   +P + D+EYD L R    +   FP+L ++ED 
Sbjct: 1   MDLQLAEKRVKDLHNLLNQYNYEYHVLDQPSVPDAEYDRLMRDLIELEGQFPEL-KTED- 58

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P  ++GGE+ L +F KV H    LSL   ++ +DLR F  R+    ++    ++ +  
Sbjct: 59  -SPTQRVGGEI-LDMFEKVEHQSQMLSLGNAFSEQDLRDFDRRV----RQGAGENVSYVC 112

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G F   A RGDG  GE+++A ++ I +IP  L L     +EVRGE
Sbjct: 113 ELKIDGLAVSLRYEDGLFTLGATRGDGSIGENITANLKTIRSIP--LRLKESVTMEVRGE 170

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
            ++ +  F  LN      G +P+ANPRNAA+G LR+L+P     R L+ FV+G+    + 
Sbjct: 171 AFMPRRSFEKLNKAKEENGEEPFANPRNAAAGSLRQLDPRLAAKRNLDIFVYGIANVGDT 230

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   ++  +   ++ Y       R  L YDIDG+V KVD  
Sbjct: 231 GVVSHSEGLDYLDSLGFKTNKERKRCESIEKVIEYVQGWTDKRPNLSYDIDGIVIKVDSL 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  A+SPRW I++KF  ++  T L DI++ +GRTG++TP A LEPV + G  + 
Sbjct: 291 ESQEQLGTTAKSPRWAIAYKFPAEEVVTTLRDIELSVGRTGVVTPTALLEPVRVAGTTVQ 350

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DI++GD+V+VK+AG++IP+VV+++ + R  + Q F+
Sbjct: 351 RASLHNEDLIR-----------EKDIKIGDQVVVKKAGDIIPEVVNVLADRRTGEEQDFN 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +VR L+ +      A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 400 MPTHCPECESELVR-LDGEV-----ALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEK 452

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F        I+  ADI+ L   Q     ++      G+ SV NL  +I   +  S
Sbjct: 453 VISQLFAEN----LIKDVADIYKLTYEQLIQLERM------GEKSVNNLIQAIENSKGNS 502

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LE+ +F LGIRHVGA+ A++L          AQE  ++ A       +L  +  +G+ +A
Sbjct: 503 LEKLLFGLGIRHVGAKAAKTL----------AQEFGHMEALEKASRDNLTAINEIGEKMA 552

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSE-----IENKKLVFTGTLQKIQR 663
            +IV F+ +      + A LK    ++  +  K VS+E        K +V TG L+ + R
Sbjct: 553 DSIVSFF-DQEEAHELIAELKAAGVNMAYNGPKPVSAENSDSFFAGKTVVLTGKLEIMSR 611

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           ++A+E +  LG  VS  +S+KTD++I G+  GSKL KAQ+LGV++ NEE+ +
Sbjct: 612 NEAKEKIEALGGKVSGSVSKKTDVVIAGEEAGSKLTKAQELGVEVWNEERLV 663


>gi|300870442|ref|YP_003785313.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
 gi|300688141|gb|ADK30812.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
          Length = 663

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/711 (34%), Positives = 399/711 (56%), Gaps = 56/711 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK++  L   I+YH+  YY    P I D EYD L R  + +   FP+L + + P
Sbjct: 1   MNLEEARKKIEQLTATINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKDDSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
               NK+GG +     K  H I   SL  + N E+  +F  R+    ++ + + I +T+E
Sbjct: 61  T---NKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLEFDNRM---QKELNASKIKYTVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + YEKGK   A+ RGDG  GE+V+  ++ +  +P+  S+   + + VRGE 
Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMNNVPK--SIKETKKLIVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            I+K DF  LN E   +   P+AN RNAASG LR+L+ ++   R L FF + +    +  
Sbjct: 173 LITKKDFEILNKEREELEEIPFANARNAASGGLRQLDSSESKKRRLKFFAYQIANYKDFD 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              +Y+ ++ +  LGF V       +    + +YYN ++  RS + Y+IDGLV KVD+  
Sbjct: 233 LTNEYKSMEFLSELGFTVEGVHPNIDAKKVLETYYN-IQEKRSKMDYEIDGLVIKVDDVK 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +R+PR+ ++ KF  ++  T L +I++Q+GRTG LTPVA+LEPV +GG  ++N
Sbjct: 292 YQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN + IK            +DIR+GD V+V R+G+VIPK+V +++ +R  D++ F F
Sbjct: 352 VTLHNPNEIK-----------SKDIRIGDTVVVIRSGDVIPKIVRVVLEKRPSDSKVFEF 400

Query: 431 PSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           P  CP+C     V D     G ++   RC     C ++    +++FVS+ A N+E +GK+
Sbjct: 401 PKKCPVCGGETAVTD-----GDVIV--RCINE-ECPSKITRYIEYFVSKPAMNMERIGKE 452

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRR 546
            +  F KS      ++ PAD++ + R         +++  F   G+   + + +SI   +
Sbjct: 453 WIAVFTKSG----LVKTPADLYKITR---------DDLFKFERMGEKLASYMLESIENSK 499

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           N +L+RFI++LGIR VG   A  LAKY+ S +NF +          DD   L  +  +G+
Sbjct: 500 NTTLKRFIYALGIRQVGETTADLLAKYFTSVENFKK-------ATIDD---LQNIEGIGE 549

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A++I +F  N + +  ++ LL      +      V S +  K +V TG+++   R  A
Sbjct: 550 ISAKSIYDFLHNKKTLKLIDDLLDAGVNPVFEKLTTVESPLTGKNVVITGSIEGFTRTSA 609

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +E   +LGA V + +S+ TDI+IVG+  GSKL+KAQ+LG++IM  + F+ L
Sbjct: 610 KETAERLGATVQSAVSKNTDILIVGEKAGSKLKKAQELGIQIMEADDFIKL 660


>gi|312900318|ref|ZP_07759629.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470]
 gi|311292506|gb|EFQ71062.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470]
          Length = 676

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 244/713 (34%), Positives = 397/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTL Y+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLTYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668


>gi|295397184|ref|ZP_06807287.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563]
 gi|294974573|gb|EFG50297.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563]
          Length = 670

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/712 (34%), Positives = 397/712 (55%), Gaps = 61/712 (8%)

Query: 13  SIEQARKE-LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           S + AR E L+ L  + +Y    YY    P I D+EYD L R    +   +P   ++E P
Sbjct: 8   STDVARIEALTRLLNDYAYQ---YYALDNPTISDTEYDKLYRELQDLEAKYPTFIQAESP 64

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++G  ++ +  KVTHS P +SL   +N +++ KF+  +    +K  +  + F  E
Sbjct: 65  T---QRVGDVVSEAFTKVTHSQPMMSLGNAFNFDEVAKFVEDV----KKNVNGQVRFVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + I+YE G++V AA RGDG  GED++  +R I ++P  L  +I   IEVRGE+
Sbjct: 118 LKIDGLSVAIQYENGRYVRAATRGDGVVGEDITNNVRTIKSVPMKLRQDID--IEVRGEI 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+ K+ FLALN++    G   +ANPRN+A+G +R+L+     +R LN F++    + E+ 
Sbjct: 176 YMPKDAFLALNEKREEAGLPTFANPRNSAAGSIRQLDSKVTASRNLNIFLYSGVFSDELP 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q ++ Q     GF VN   R   TF  I +Y  EM + R  L Y IDG+V KVD+FS
Sbjct: 236 IKSQQDLFQHFPDYGFRVNPLTRVCETFEEIQAYIEEMTAKRHELSYGIDGIVIKVDDFS 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG   ++P+W I++KF  ++  T + DI+  +GRTG++TP A +EPV + G+ +  
Sbjct: 296 DQETLGYTVKAPKWAIAYKFQAEEVETTIHDIEWTVGRTGVVTPTAIMEPVLLDGSTVQR 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D I+            +DIR+ D V++ +AG++IP+VV +++++R  D+ P+  
Sbjct: 356 ASLHNMDLIE-----------AKDIRLNDTVVIHKAGDIIPEVVTVVLDKRPEDSTPYPK 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S +V   +        A RC    AC AQ  E+L HFVSR+A NI G+G   
Sbjct: 405 PTTCPVCHSDLVHLEDE------VALRCVNP-ACPAQAKEKLYHFVSRNAMNITGVGPSV 457

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+  +   +    +  PAD++ +++ Q  +  KI      GD +   +  +I   +  SL
Sbjct: 458 LEQMYDKAN----VHSPADLYQVKKDQLMALDKI------GDKASDKIIQAIEDSKENSL 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR +A+ Y S Q        I+     D   L  +  +G+ IA 
Sbjct: 508 ERLLFGLGIRHVGAKAARQIAEVYPSMQ-------EIMTKERTD---LTNIEGIGETIAD 557

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-------NKKLVFTGTLQKIQR 663
           +IV F+        ++AL++  +    +++  V +E+E        K +V TG L +  R
Sbjct: 558 SIVAFFATDGVRETIDALVE--NGVNMQYKGPVKAEVEAIDSFWSGKTVVLTGKLSQYTR 615

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A++ +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + +E+  +
Sbjct: 616 PEAKKAIEALGGNVTGSVSKKTDILVAGEDAGSKLAKAENLGVTVFSEQDMV 667


>gi|16803798|ref|NP_465283.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes EGD-e]
 gi|224499523|ref|ZP_03667872.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes Finland 1988]
 gi|224503316|ref|ZP_03671623.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL R2-561]
 gi|81508669|sp|Q8Y6D0|DNLJ_LISMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|16411212|emb|CAC99836.1| lmo1758 [Listeria monocytogenes EGD-e]
          Length = 671

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 257/711 (36%), Positives = 383/711 (53%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N EDL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+  +    
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  ++   + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKKCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL+E+  +       G   +++S E      K +V TG L+K+ R+ A+
Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|258421012|ref|ZP_05683943.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9719]
 gi|257842960|gb|EEV67378.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9719]
          Length = 667

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/702 (35%), Positives = 385/702 (54%), Gaps = 58/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVGYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C 
Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558

Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +I A+   LK+     +   I   +     E   K +V TG L ++ R++A +++   
Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+
Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659


>gi|226310273|ref|YP_002770167.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
 gi|254781268|sp|C0Z4D6|DNLJ_BREBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226093221|dbj|BAH41663.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
          Length = 671

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 249/710 (35%), Positives = 395/710 (55%), Gaps = 54/710 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A  ++  L + I  H+  Y++  +P I D EYD L R    +  +FPDL   + P+ P  
Sbjct: 6   AETKIKELAKRIERHNRLYHEEDRPEISDQEYDQLMRELRELETSFPDL---QSPDSPSL 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE      KV H  P LSL   +N ED+R F  R+    Q     ++ +  E KIDG
Sbjct: 63  RVGGEPLPFFEKVVHKTPMLSLGNAFNEEDIRDFDRRVR---QAVGSQAVRYVAELKIDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++ YE G FV  A RGDG +GED++  ++ I +IP  L L  P  +EVRGE Y+SK 
Sbjct: 120 LAVSLHYENGLFVRGATRGDGTTGEDITQNLKTIRSIP--LRLTKPLTLEVRGEAYMSKG 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E    G   +ANPRN+A+G LR+L+P    +R L+ F++G+G       +   
Sbjct: 178 AFEKLNKEREERGEALFANPRNSAAGSLRQLDPKIAASRQLDTFIYGIGDLQGETVESHS 237

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L  +  LGF VN   R  +    ++++       R  LPY+IDG+V KVD ++ Q++L
Sbjct: 238 EGLDLLETLGFMVNQERRVFDDVDELLAFIAGWTEKRPHLPYEIDGMVIKVDSYAQQEEL 297

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A T L  I++ +GRTG +TP A L+PV++ G  +  A+LHN
Sbjct: 298 GFTAKSPRWAIAYKFPAEEAVTILEGIEVSVGRTGNVTPTALLKPVSLAGTTVKRASLHN 357

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED I+            + + +GD V+VK+AG++IP+++ ++   R  +  PF+ P+ CP
Sbjct: 358 EDIIR-----------EKGLLIGDHVVVKKAGDIIPEIIAVLPERRTGNEVPFAMPTHCP 406

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S +VR L  +      A RC   + C A   E + HFVSR A NI+GLG++ +   +
Sbjct: 407 ECGSELVR-LEEEV-----ALRCINPM-CPALIREGMIHFVSRTAMNIDGLGEKVVAQLY 459

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++ L  +Q+ +   +E +   G+ SV NL  +I   +  SLER +F
Sbjct: 460 RD----GIIHSVADLYYLH-QQRDALLGLERM---GEKSVDNLLAAIEASKENSLERVLF 511

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR VGA+ AR LA+++         I+ I+  + ++   + ++  +G  +A ++V +
Sbjct: 512 GLGIRLVGAKAARVLAEHF-------GNIDTIMQASEEE---ITQIDEIGPKMAASLVNY 561

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKAQEY 669
           +  P+    +E L    +  +    K +  E         K +V TGTL ++ R +A+E 
Sbjct: 562 FAQPQAQAVIERLR---AAGVNMEYKGIRIESGADLPFSGKTIVLTGTLTQMSRQEAEEA 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +LG  V+  +S+KTD++I G+  GSKLEKA++LGV +M+E  FL +L+
Sbjct: 619 IARLGGKVTGSVSKKTDLVIAGEKAGSKLEKAEKLGVAVMDEAGFLQVLE 668


>gi|313632855|gb|EFR99806.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL N1-067]
          Length = 678

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 259/720 (35%), Positives = 389/720 (54%), Gaps = 66/720 (9%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ ++  +EL ++  + SY    YY    P + D+EYD   +    I  A P+     
Sbjct: 6   EEMADKKRYEELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLQIEAAHPEWIT-- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P  P  ++GGE+     KV H  P LSL   +N +DL  F  RI    + K    I + 
Sbjct: 61  -PESPSKRVGGEVLEGFQKVAHDTPMLSLANAFNKDDLADFDRRI----RDKVGEDIAYM 115

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  ++++YEKGK+   A RGDG +GED++A +R I +IP  L  +    IEVRG
Sbjct: 116 CELKIDGLAVSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYS--IEVRG 173

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTS 247
           E ++ K  F  LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    
Sbjct: 174 EAFMPKRSFQKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFG 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+      + L  +  LG  VN   R       + +Y +E    R+ L YDIDG+V K++
Sbjct: 233 EMGVTTHSDGLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLN 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q+Q+G  A+SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  
Sbjct: 293 DLEQQRQMGTTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTT 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LHNED I             +DIR+GD VL+K+AG++IP+V+  I  ER  + +P
Sbjct: 353 VSRASLHNEDLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGEEEP 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG
Sbjct: 402 FHMPKNCPTCGSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLG 454

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +   F        I+  AD+F L      S  K+  +   G+ SVTNL  SI + + 
Sbjct: 455 EKVIIQLFTH----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEQSKQ 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLE+ +F LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ 
Sbjct: 505 NSLEKLLFGLGIRHVGAKAAKSLAIHFETMDNLKLADKETLTSIND----------IGEK 554

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTL 658
           +A +IV ++ N      V  LL E+  +       G   +N+S E      K +V TG L
Sbjct: 555 MADSIVTYFANEE----VHDLLDELKRANVNMTYTGPKLENMSEEELIFAGKTVVLTGKL 610

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R+ A+  +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +E   +  L
Sbjct: 611 EQLTRNDAKSLIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYL 670


>gi|57650655|ref|YP_186789.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus COL]
 gi|81694155|sp|Q5HEL8|DNLJ_STAAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57284841|gb|AAW36935.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus COL]
          Length = 667

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/702 (35%), Positives = 385/702 (54%), Gaps = 58/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELNKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C 
Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558

Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +I A+   LK+     +   I   +     E   K +V TG L ++ R++A +++   
Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+
Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659


>gi|302333569|gb|ADL23762.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 667

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/702 (35%), Positives = 385/702 (54%), Gaps = 58/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C 
Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558

Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +I A+   LK+     +   I   +     E   K +V TG L ++ R++A +++   
Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+
Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659


>gi|329726878|gb|EGG63336.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU144]
          Length = 665

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/711 (34%), Positives = 395/711 (55%), Gaps = 61/711 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + D+EYD L      I   +P+   ++ P  
Sbjct: 1   MQDVKKRVGKLHDLLNQYSYEYYVQDNPSVPDNEYDKLLHELIEIEEKYPEFKSTDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GGE   S  KV H  P LSL   +N EDLRKF  RI     +     + +  E K
Sbjct: 60  --VRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDSIGKVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++      G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   +           LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRH 664
           V + +N      + +L++++S  ++    K + ++EIE       K +V TG L+++ R+
Sbjct: 553 VTYLEN----SDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRN 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +A E++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+
Sbjct: 609 EASEWLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFI 659


>gi|313637419|gb|EFS02883.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL S4-171]
          Length = 671

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 259/711 (36%), Positives = 383/711 (53%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLQIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N  DL  F  RI    + K    I +  E KIDG  
Sbjct: 62  GGEVLEGFQKVAHDTPMLSLANAFNKGDLADFDRRI----RDKVGEDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YEKGK+   A RGDG +GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+      +
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVTTHSD 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R       + +Y +E    R+ L YDIDG+V K+++   Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER  D +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGDEKPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CGSDLVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI + +  SLE+ +F 
Sbjct: 457 H----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEQSKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFETMDNLKLADKETLTSIND----------IGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL E+  +       G   +N+S E      K +V TG L+++ R+ A+
Sbjct: 557 ANEE----VHDLLDELKRANVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEQLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +E   +  L
Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYL 663


>gi|15924894|ref|NP_372428.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927478|ref|NP_375011.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus
           subsp. aureus N315]
 gi|148268377|ref|YP_001247320.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH9]
 gi|150394439|ref|YP_001317114.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH1]
 gi|156980220|ref|YP_001442479.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316913|ref|ZP_04840126.1| DNA ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|255006691|ref|ZP_05145292.2| DNA ligase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258408884|ref|ZP_05681166.1| DNA ligase [Staphylococcus aureus A9763]
 gi|258430016|ref|ZP_05688386.1| DNA ligase [Staphylococcus aureus A9299]
 gi|258443466|ref|ZP_05691808.1| DNA ligase [Staphylococcus aureus A8115]
 gi|258445324|ref|ZP_05693515.1| DNA ligase [Staphylococcus aureus A6300]
 gi|258447888|ref|ZP_05696022.1| DNA ligase [Staphylococcus aureus A6224]
 gi|258453321|ref|ZP_05701306.1| DNA ligase [Staphylococcus aureus A5937]
 gi|269203557|ref|YP_003282826.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894571|ref|ZP_06302799.1| DNA ligase, NAD-dependent [Staphylococcus aureus A8117]
 gi|282928077|ref|ZP_06335684.1| DNA ligase, NAD-dependent [Staphylococcus aureus A10102]
 gi|295407285|ref|ZP_06817084.1| DNA ligase [Staphylococcus aureus A8819]
 gi|296275664|ref|ZP_06858171.1| DNA ligase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246190|ref|ZP_06930041.1| DNA ligase [Staphylococcus aureus A8796]
 gi|81705420|sp|Q7A4Q5|DNLJ_STAAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81781309|sp|Q99SY3|DNLJ_STAAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216246|sp|A7X432|DNLJ_STAA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359291|sp|A6U309|DNLJ_STAA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359292|sp|A5IU71|DNLJ_STAA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13701697|dbj|BAB42990.1| DNA ligase [Staphylococcus aureus subsp. aureus N315]
 gi|14247676|dbj|BAB58066.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741446|gb|ABQ49744.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH9]
 gi|149946891|gb|ABR52827.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH1]
 gi|156722355|dbj|BAF78772.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257840331|gb|EEV64793.1| DNA ligase [Staphylococcus aureus A9763]
 gi|257849610|gb|EEV73578.1| DNA ligase [Staphylococcus aureus A9299]
 gi|257851351|gb|EEV75291.1| DNA ligase [Staphylococcus aureus A8115]
 gi|257855842|gb|EEV78766.1| DNA ligase [Staphylococcus aureus A6300]
 gi|257858820|gb|EEV81689.1| DNA ligase [Staphylococcus aureus A6224]
 gi|257864529|gb|EEV87272.1| DNA ligase [Staphylococcus aureus A5937]
 gi|262075847|gb|ACY11820.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282590141|gb|EFB95222.1| DNA ligase, NAD-dependent [Staphylococcus aureus A10102]
 gi|282763058|gb|EFC03190.1| DNA ligase, NAD-dependent [Staphylococcus aureus A8117]
 gi|285817585|gb|ADC38072.1| DNA ligase [Staphylococcus aureus 04-02981]
 gi|294967860|gb|EFG43890.1| DNA ligase [Staphylococcus aureus A8819]
 gi|297176897|gb|EFH36154.1| DNA ligase [Staphylococcus aureus A8796]
 gi|312830277|emb|CBX35119.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129286|gb|EFT85280.1| DNA ligase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329724802|gb|EGG61306.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21172]
          Length = 667

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/702 (35%), Positives = 385/702 (54%), Gaps = 58/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C 
Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558

Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +I A+   LK+     +   I   +     E   K +V TG L ++ R++A +++   
Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+
Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659


>gi|258510685|ref|YP_003184119.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477411|gb|ACV57730.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 684

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 249/723 (34%), Positives = 389/723 (53%), Gaps = 64/723 (8%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ALS+E+AR     L ++I YH+  YY    P I D+E+DAL R    +   +P+L    D
Sbjct: 9   ALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELV---D 65

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P  P  ++G        KV H +P LSL   ++ EDL  +  R+    ++   + + +  
Sbjct: 66  PASPTQRVGAPALEGFAKVVHEVPMLSLANAYSTEDLLDWDRRV----RQAVGDDVRYVC 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + +RY+ G+ V  A RGDG  GED++A IR I  +P  L L+ P  +EVRGE
Sbjct: 122 ELKVDGLAVALRYQDGRLVLGATRGDGSVGEDITANIRTIRNVP--LELSEPVSLEVRGE 179

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K +F+ LN+     G   +ANPRNAA+G LR+L+P    +R L   V+ L +    
Sbjct: 180 AYMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEAH 239

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +   + L  +  LG P +           +++Y       R  LPY  DG+V KVD  
Sbjct: 240 GCETHSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVDSL 299

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG  A+SPRW I++K+A +QA T L  I++ +GRTG++TP A  +PV + G  ++
Sbjct: 300 ALQARLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTTVS 359

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED ++            +DIRVGD ++V++AG++IP+V+  +   R      F 
Sbjct: 360 RASLHNEDLVR-----------EKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEFR 408

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C SR+VR L+ +      A RC     C A   E L HF SRDA NIEGLG+Q
Sbjct: 409 MPETCPQCGSRLVR-LDGEV-----AWRCINP-DCPALLREGLIHFCSRDAMNIEGLGEQ 461

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +       D    +R  AD++ L++       ++      GD     L  +I + +  S
Sbjct: 462 WITVLL---DRGL-VRTHADLYRLRKADLVQLDRM------GDKLADKLLHNIQESKRNS 511

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVG + A++LA+++++       I+ +++ + +D   L+ VP +G  +A
Sbjct: 512 LERLLFGLGIRHVGEKAAKTLAEHFVT-------IDALMSASEED---LMAVPDIGPKVA 561

Query: 610 QAIVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           Q+I +++  PR    V  L++E     V+ +    +K     +  K +V TG LQ   R 
Sbjct: 562 QSIRQYFDTPR----VRQLIQELKDLGVNMTYLGPQKVSDGPLAGKTVVLTGVLQAADRK 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFL 717
           +A  ++ Q+G  V++ +S KTD++I GD  GSKL KAQ++        ++I +E  FL L
Sbjct: 618 QATAWIEQMGGKVASSVSAKTDVLIAGDKAGSKLAKAQEILRNHPDAKLEIWDEAAFLRL 677

Query: 718 LQQ 720
           + +
Sbjct: 678 VDE 680


>gi|21283574|ref|NP_646662.1| DNA ligase [Staphylococcus aureus subsp. aureus MW2]
 gi|49486723|ref|YP_043944.1| DNA ligase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87161485|ref|YP_494537.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195803|ref|YP_500613.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151222054|ref|YP_001332876.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161510127|ref|YP_001575786.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140357|ref|ZP_03564850.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253734986|ref|ZP_04869151.1| DNA ligase [Staphylococcus aureus subsp. aureus TCH130]
 gi|258451030|ref|ZP_05699066.1| DNA ligase, NAD-dependent [Staphylococcus aureus A5948]
 gi|282923243|ref|ZP_06330924.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9765]
 gi|284024951|ref|ZP_06379349.1| DNA ligase [Staphylococcus aureus subsp. aureus 132]
 gi|294849453|ref|ZP_06790195.1| DNA ligase [Staphylococcus aureus A9754]
 gi|297208934|ref|ZP_06925338.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300913009|ref|ZP_07130447.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304379092|ref|ZP_07361839.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|75410712|sp|Q9AIU7|DNLJ_STAAU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81649030|sp|Q6G829|DNLJ_STAAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81704301|sp|Q7A0H1|DNLJ_STAAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123098079|sp|Q2G1Y0|DNLJ_STAA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123749595|sp|Q2FFJ1|DNLJ_STAA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359293|sp|A6QID2|DNLJ_STAAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359294|sp|A8Z2R8|DNLJ_STAAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13182984|gb|AAK15020.1| DNA ligase [Staphylococcus aureus]
 gi|21205015|dbj|BAB95710.1| DNA ligase [Staphylococcus aureus subsp. aureus MW2]
 gi|49245166|emb|CAG43632.1| DNA ligase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87127459|gb|ABD21973.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87203361|gb|ABD31171.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150374854|dbj|BAF68114.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368936|gb|ABX29907.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253727168|gb|EES95897.1| DNA ligase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257861272|gb|EEV84084.1| DNA ligase, NAD-dependent [Staphylococcus aureus A5948]
 gi|269941376|emb|CBI49773.1| DNA ligase [Staphylococcus aureus subsp. aureus TW20]
 gi|282593154|gb|EFB98153.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9765]
 gi|294823590|gb|EFG40017.1| DNA ligase [Staphylococcus aureus A9754]
 gi|296886424|gb|EFH25353.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|298695246|gb|ADI98468.1| DNA ligase [Staphylococcus aureus subsp. aureus ED133]
 gi|300885787|gb|EFK80994.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751777|gb|ADL65954.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304342327|gb|EFM08219.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|320139715|gb|EFW31584.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142368|gb|EFW34182.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323439848|gb|EGA97564.1| DNA ligase [Staphylococcus aureus O11]
 gi|323443011|gb|EGB00632.1| DNA ligase [Staphylococcus aureus O46]
 gi|329314581|gb|AEB88994.1| DNA ligase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728576|gb|EGG65006.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21189]
 gi|329731482|gb|EGG67845.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21193]
          Length = 667

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/702 (35%), Positives = 385/702 (54%), Gaps = 58/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C 
Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558

Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +I A+   LK+     +   I   +     E   K +V TG L ++ R++A +++   
Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+
Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659


>gi|47095684|ref|ZP_00233291.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854]
 gi|254900737|ref|ZP_05260661.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes J0161]
 gi|254913778|ref|ZP_05263790.1| DNA ligase [Listeria monocytogenes J2818]
 gi|254938165|ref|ZP_05269862.1| DNA ligase [Listeria monocytogenes F6900]
 gi|284802202|ref|YP_003414067.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578]
 gi|284995344|ref|YP_003417112.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923]
 gi|47015969|gb|EAL06895.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854]
 gi|258610778|gb|EEW23386.1| DNA ligase [Listeria monocytogenes F6900]
 gi|284057764|gb|ADB68705.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578]
 gi|284060811|gb|ADB71750.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923]
 gi|293591794|gb|EFG00129.1| DNA ligase [Listeria monocytogenes J2818]
          Length = 671

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 257/711 (36%), Positives = 383/711 (53%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N EDL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+  +    
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  ++   + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL+E+  +       G   +++S E      K +V TG L+K+ R+ A+
Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|282919739|ref|ZP_06327471.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C427]
 gi|282316377|gb|EFB46754.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C427]
          Length = 667

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/702 (35%), Positives = 386/702 (54%), Gaps = 58/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKDPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + +   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C 
Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558

Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +I A+   LK+     +   I   +     E   K +V TG L ++ R++A +++   
Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GA V++ +++ TD++IVG++ GSKL KAQ LG++I  E+QF+
Sbjct: 618 GAKVTSSVTKNTDVVIVGEDAGSKLTKAQSLGIEIWTEQQFV 659


>gi|78357136|ref|YP_388585.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123768784|sp|Q30ZK6|DNLJ_DESDG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78219541|gb|ABB38890.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 705

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/724 (34%), Positives = 402/724 (55%), Gaps = 72/724 (9%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++  +EQ  +EL +L   + YH   YY   +P I D+EYDAL R    +    P+     
Sbjct: 11  DSAKVEQRMEELRTL---LEYHGHRYYVMDEPEISDAEYDALFRELVRLEEEHPEHIH-- 65

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P  P +K+GG++   L    HS+   SL+  + IE+ R+F+ R+ R    + D  + F 
Sbjct: 66  -PGSPTHKVGGQILDGLKPREHSLRMYSLDNAFGIEEFREFVERVVRL---EPDAPLEFW 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI--PEIIEV 187
           ++PK+DG  + + YE G F+ A  RGDG  GEDV+  +R +  +   L+  I  P  +EV
Sbjct: 122 VDPKMDGLAMELVYENGVFLLAVTRGDGSMGEDVTHTMRTVRNVRMRLNPEIEAPVRLEV 181

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEV I++ DF ALN      G K +ANPRNAA+G +R+L+ +    R L F  +G+G+ 
Sbjct: 182 RGEVIITRADFEALNARQQQKGGKLFANPRNAAAGSVRQLDSSVAAARPLRFMAYGVGQV 241

Query: 247 SEIFAKG------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
             ++A G      QY++++ ++ LGF V +  R       + + + E+ + R  LP++ID
Sbjct: 242 --VWADGRQRWRTQYDIMRGLQELGFAVPSQGRLCAAPADVEAAFTELSAARHELPFEID 299

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+++  LQ+ LG  AR+PRW I+ KF   QA TRL DI IQ+GRTG++TPVA LEP
Sbjct: 300 GVVAKLNDLDLQEALGFTARAPRWAIALKFPAHQARTRLKDIRIQVGRTGVMTPVAELEP 359

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG  +++ATLHNED I+            + + +GD V+V+RAG+VIP+VV  +  E
Sbjct: 360 VTVGGVTVSSATLHNEDEIR-----------AKGLMLGDVVIVQRAGDVIPEVVRAVPEE 408

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    + + FP+ CP+C S  VR      G+  AA RCT  + C A + + + HFVS+  
Sbjct: 409 RTGAEREYVFPAVCPVCGSAAVR------GEGEAAWRCT-NMQCPAVRKQAIIHFVSKAG 461

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG---FGDVSVTN 537
            +I+G+G++ ++    S      +  PAD+F + R         E++LG    G+   +N
Sbjct: 462 LDIDGVGRKWIEQLVDS----GRVVSPADLFRITR---------EDLLGMERMGEKLASN 508

Query: 538 LYDSINKRRNIS-LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
             ++ +  R+ S L+RFI +LGIRHVG + AR+LA  + +     +     +    D   
Sbjct: 509 FIEAFDSARHESTLQRFICALGIRHVGEQTARTLAARFGNMDELMRADQETLQSLRD--- 565

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKK 651
                  +G  +A +I  F+ N +N   ++      L  E     G  +    + +  KK
Sbjct: 566 -------IGGEVAGSIRAFFANGQNRELLQQFKNLGLWPEEQQPAG--DSTPVTPLAGKK 616

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           ++FTG+L ++ R +A+    + GA V + +S + DI++ GD PGSKLEKA+ LG+ ++ E
Sbjct: 617 ILFTGSLVRMTRSEAKAMAEKAGAAVMSGVSARLDILVAGDKPGSKLEKARSLGITVLTE 676

Query: 712 EQFL 715
           ++F+
Sbjct: 677 DEFI 680


>gi|20807100|ref|NP_622271.1| NAD-dependent DNA ligase [Thermoanaerobacter tengcongensis MB4]
 gi|81482513|sp|Q8RC42|DNLJ_THETN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|20515592|gb|AAM23875.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 666

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 257/707 (36%), Positives = 397/707 (56%), Gaps = 51/707 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+ARK +  L ++I+YH+  YY   +P I D EYD L R    +   +P+    + P+ P
Sbjct: 4   EEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---KTPDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE        TH +P LSL   +  E++++F  R+     K+    + + +EPKI
Sbjct: 61  SQRVGGEPLDEFEPFTHIVPMLSLANAFTAEEIKEFDRRV-----KEAVGEVEYVVEPKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + + YE G F   + RGDG  GE+V+  ++ I +IP  L  ++  +  VRGEV++ 
Sbjct: 116 DGLSVELVYENGMFTVGSTRGDGIVGENVTPNLKTIKSIPLRLKDSVNLV--VRGEVFMP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN+E    G   +ANPRNAA+G +R+L+P     R L+ F+  L +      K 
Sbjct: 174 KASFAKLNEERAERGESLFANPRNAAAGSVRQLDPKVTAKRDLDIFIFNLQRIEGRDFKT 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L+ ++  GF V   +++  T   ++    E+  ++ +LPYDIDG V KV+E   ++
Sbjct: 234 HVEALEFLKEQGFKVIPLIKKCTTIEEVIKAIEELGEMKDSLPYDIDGAVIKVNELDKRE 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG+ A+  RW I+ K+  +   T+++DI +Q+GRTG LTP A LEPV I G++++ ATL
Sbjct: 294 ILGQTAKDYRWAIAFKYPAEMKKTKIVDIVVQVGRTGALTPTAVLEPVVISGSVVSRATL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNEDYIK            +DIR+GD VLV +AG +IP+VV+++  ER  D + F  P  
Sbjct: 354 HNEDYIK-----------EKDIRIGDTVLVHKAGGIIPEVVEVVKEERTGDEKAFVMPDK 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C +  VR      G+  A  RCT GL C AQ   R+ HF S+DA +IEGLG   +  
Sbjct: 403 CPECGALAVR----LPGE--AVRRCT-GLNCPAQIARRIIHFASKDAMDIEGLGPAIISQ 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     I+  AD++ L+ R   +  ++      GD S  NL ++I K +   L+R 
Sbjct: 456 LLSKG----LIQNVADLYYLKYRDLITLERM------GDKSARNLLEAIEKSKKRDLDRL 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGI  +G++ A+ +A+++ S       ++NI+    +D+L L   P +G  +A++IV
Sbjct: 506 LFGLGINLIGSKAAQVIAEHFKS-------MDNIMKAKYEDFLEL---PDIGPKMARSIV 555

Query: 614 EFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F+   +N   VE  LKE   ++ +     VS+  E K  V TG L+   R +A   + +
Sbjct: 556 TFFSEEQNRRVVER-LKEAGVNMEKLSTGKVSNIFEGKIFVLTGALKNYTRDEAARLIVE 614

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  V+  +S+KTD +IVG +PGSKL+KAQ+LGVKI+NEEQF  +L+
Sbjct: 615 RGGKVTNSVSKKTDYLIVGADPGSKLKKAQELGVKIINEEQFEAMLK 661


>gi|312622179|ref|YP_004023792.1| DNA ligase, nad-dependent [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202646|gb|ADQ45973.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 673

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 249/703 (35%), Positives = 392/703 (55%), Gaps = 49/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  +
Sbjct: 6   KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     +V H +P LSL  ++N  +L  F  R+       + +   + +E KIDG 
Sbjct: 63  VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G F+  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K++
Sbjct: 120 SVALEYENGLFIRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKDE 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  + +  E   +   E
Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNV-QWCEKELETHAE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   G
Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCT G+ C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+         + N+  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 KG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S       I+++     +  LSL   P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEEQLLSL---PDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E  LK    +    +K  S  ++    V TG L K  R++A+E +  LGA 
Sbjct: 559 RQDQTKHLIER-LKAAGVNTVSEKKAKSDILKGYTFVLTGALSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660


>gi|297616809|ref|YP_003701968.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
 gi|297144646|gb|ADI01403.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
          Length = 668

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/710 (34%), Positives = 385/710 (54%), Gaps = 53/710 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  R+    L +EI  HD  YY   +P+I D+EYD L R    +  A+PDL     P+ 
Sbjct: 1   METPRERAEKLREEIRKHDYHYYVLDQPLISDAEYDRLFRELVELEQAYPDLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE+      V H +P LSL+  +N  +LR F  R+    ++  D ++ +  E K
Sbjct: 58  PTQRVGGEVLKGFTPVQHRVPLLSLDNAFNERELRDFNRRLK---ERLGDEAVAYVCELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I + Y+ G  +  A RGDG  GEDV+A IR I ++P  L+  +P + EVRGEVY+
Sbjct: 115 IDGVSIALVYQDGVLMSGATRGDGIVGEDVTANIRTIKSLPLRLTYPLPRV-EVRGEVYM 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
            K  F  LN E    G K +ANPRNAA+G +R+L+P     R L   V+ +         
Sbjct: 174 PKEAFARLNREREDRGEKTFANPRNAAAGSIRQLDPKVTAGRTLGLLVYDILHLEGKEID 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+ +  LGFPV+   R   +   ++ Y  E +  R  LPY+IDG+V K++    +
Sbjct: 234 SQRETLEFLSELGFPVDRNFRWCASLDEVLEYCEEWQGRRHELPYEIDGVVVKLNSLPAR 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A+SPRW I++KF  ++  T+++ I++ +GRTG++TP A +EPV++ G  ++ A+
Sbjct: 294 QLLGATAKSPRWAIAYKFPAEEKETKIVAIELNVGRTGVITPTAVMEPVSLAGTTVSRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+            +DIRVGD V+V +AG++IP+VV  +  +R      F  P 
Sbjct: 354 LHNYDLIR-----------EKDIRVGDMVVVHKAGDIIPEVVRSLPEKRTGKEIEFKMPD 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C SRVVR     +G++  A+RC   + C A+  E L  F SR+A +IEGLG   ++
Sbjct: 403 KCPACGSRVVR----FSGEV--AYRCD-NINCPARLKESLIFFASREAMDIEGLGPALVE 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                 D      + AD++ L+  +     ++      G  S  NL  ++ + +   L R
Sbjct: 456 QLV---DRGMVSNV-ADLYYLRAEELAGLERM------GQKSAANLIRALEQSKGRPLHR 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +LGIR+VG + AR LA++Y   + F+          + D   L+ +P +G+ IA+++
Sbjct: 506 LLNALGIRYVGLKTARILAEHYRDIERFS----------DIDREELMSIPEIGEKIAESV 555

Query: 613 VEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             F+  PRN  ++  L K     V P     +    S+   K  V TG L+ + R++A +
Sbjct: 556 TAFFAEPRNWDSIHKLKKAGVNTVEPEFSMAQ---DSQFAGKTFVLTGALESMTRNEATK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +   G  V+  +SRKTD ++ G +PGSK +KA  LGV +++E QFL LL
Sbjct: 613 AIEDRGGKVTNSVSRKTDFVVAGRDPGSKYDKAVALGVTVLDENQFLQLL 662


>gi|261854791|ref|YP_003262074.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
 gi|261835260|gb|ACX95027.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
          Length = 685

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 263/714 (36%), Positives = 384/714 (53%), Gaps = 60/714 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R  L +L  EI  H+  YY    P I D+ +D L R    I  A P+      P+ P  +
Sbjct: 18  RARLLALRDEIERHNFRYYVLDDPEISDAAFDRLMRELQQIESAHPEWI---TPDSPTQR 74

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G     + F  VTH    LSL+ ++++E+   F  RI    + K D  + F  EPK DG
Sbjct: 75  VGSPTFTTRFAPVTHHQAMLSLDNVFSVEEWDAFTQRIQD--RLKRDAPLVFAAEPKFDG 132

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEVYIS 194
             I + Y +G+ V AA RGDG +GEDV+  +R I  IP+ L  SL   +++EVRGE+ +S
Sbjct: 133 LAINLIYRQGQLVQAATRGDGQTGEDVTLNVRTIAAIPQQLPDSLLSCDLLEVRGEIVMS 192

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252
              F ALN    A G K + NPRNAA+G LR+ +P     R L FF +G+G         
Sbjct: 193 HKAFAALNAAADARGDKRFVNPRNAAAGSLRQKDPRITAKRQLQFFAYGVGAVDGADLPD 252

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q  +L  +  LGF V+   R+      +++Y  EM + RS L YDIDG+V+K++  S Q
Sbjct: 253 SQLGLLDWLADLGFTVSEWRRRCEGRDEVLAYQQEMSARRSQLDYDIDGVVFKINAQSEQ 312

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG  A++PRW I+ KF  ++A++R+  +D Q+GRTG LTPVAR++PV +GG  ++N T
Sbjct: 313 DALGFVAKAPRWAIAFKFPAEEATSRVHAVDFQVGRTGALTPVARIDPVFVGGVTVSNIT 372

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I             +DIR+GD V+V+RAG+VIP+VV ++   R  DA+  + P+
Sbjct: 373 LHNIDEIT-----------RKDIRIGDTVVVRRAGDVIPEVVRVLPELRPADARLVALPA 421

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S VVR      G+ +A  RC+GGL C AQ+ E +KHF SR A NI+GLG++ ++
Sbjct: 422 TCPVCGSEVVR----AEGEAIA--RCSGGLFCPAQRREAIKHFASRKAMNIDGLGEKWIE 475

Query: 493 FFFKSE-----DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              + +     D  F + +P  + TL R               G+ S  NL D+++  + 
Sbjct: 476 LLLEHKLVEHVDDLFHLTVP-QVLTLPR--------------MGEKSAQNLVDALSAAKQ 520

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF+++LGIR VG   A  LA ++           N+ A N      L  VP VG +
Sbjct: 521 TTLPRFLYALGIREVGEVTAAGLAAHF----------RNLDALNAATLEDLQAVPDVGPV 570

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +AQ +  F + P N   +  L+      P+I   + N +  +  +  V TGTL  + R +
Sbjct: 571 VAQHVFTFLRQPHNQEVIRNLIDAGVHWPAIVATDAN-ALPLAGRTYVLTGTLVGMSREE 629

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A E +  LGA VS  +S KT  +I G   GSKL KA  LGV +++E     LL+
Sbjct: 630 AGERLKALGAKVSGSVSSKTTAVIAGSEAGSKLTKANDLGVPVLDETDLQKLLR 683


>gi|332525978|ref|ZP_08402119.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
 gi|332109529|gb|EGJ10452.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
          Length = 686

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/718 (35%), Positives = 385/718 (53%), Gaps = 51/718 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S   A +  + L + +S+H   YY    P I D+EYD L +   AI    PDL     P
Sbjct: 1   MSPTSAAERAAELRRILSHHAHRYYVLDAPEIPDAEYDRLFQELQAIESEHPDLL---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKDDNS-IFF 128
           + P  +I G++   L  V H++  LS+  E          F  R+ R  +  DD   + +
Sbjct: 58  DSPTQRIIGQVLPGLVPVRHAVAMLSIRTETDTTAAGAEAFDARVRRELELGDDAPPVEY 117

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E K DG  I +RY  G  V AA RGDG +GEDV+  IR I  IP  L    P ++EVR
Sbjct: 118 AAELKFDGLAINLRYVAGLLVQAATRGDGETGEDVTHNIRTIGQIPLRLFGTAPPVLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEVY+ ++DF  LN+     G K + NPRN A+G +R+L+   +  + L+F+ +GLG+  
Sbjct: 178 GEVYMRRDDFERLNERQREKGAKTFINPRNTAAGAVRQLDSRSLADKRLSFYAYGLGEVQ 237

Query: 248 EIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  +   L  +   G PVN          G+V+++  + + R  LP+DIDG+VYKV
Sbjct: 238 GWEQPPTHSGTLDALAAFGLPVNGERAVVQGADGLVAFHRRIAAARDALPFDIDGVVYKV 297

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQK+LG   R PRW ++HK+  ++  TRL  I+IQ+GRTG LTPVA+LEPV +GG 
Sbjct: 298 NDIALQKRLGFVTREPRWAVAHKYPAQEQMTRLNAIEIQVGRTGKLTPVAKLEPVFVGGT 357

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN   ++         R G  +RVGD V+V+RAG+VIP+VV  +  ER     
Sbjct: 358 TVSNATLHNLFELR---------RKG--VRVGDDVIVRRAGDVIPEVVGRVPGERAGYVP 406

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P  CP+C S V R+           HRC+GGL C+AQ+ + L HF  R A +IEGL
Sbjct: 407 NFRMPRQCPVCGSAVARERGGID------HRCSGGLFCAAQRKQALLHFAGRRAMDIEGL 460

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D           IR   +++TL         K+  +    + S  NL  ++++ +
Sbjct: 461 GDKLVDQLVDG----GLIRTLPELYTL------GVAKLSALERMAEKSAANLVAALDRSK 510

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF+++LGIR VG   A+ LA+++         ++ ++  + +    L+ V  VG 
Sbjct: 511 QTTLARFLYALGIRQVGEATAKDLARHFGG-------LDRVMDASVE---QLLEVRDVGP 560

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIENKKLVFTGTLQKI 661
           I+AQ+I  F++ P N   VE  L+        HE        +  +  K LV TGTL  +
Sbjct: 561 IVAQSIRTFFEQPHNREVVEQ-LRAAGIRWDEHEGAAVANAAALPLAGKTLVLTGTLPTL 619

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R +A+E +   G  V+  +S+KT  ++ G+  GSKL+KA++LG+++++E+    LLQ
Sbjct: 620 SREQAKEMIEAAGGKVAGSVSKKTHYVVAGEEAGSKLDKARELGIEVLDEDGLRRLLQ 677


>gi|254829489|ref|ZP_05234176.1| DNA ligase [Listeria monocytogenes FSL N3-165]
 gi|258601904|gb|EEW15229.1| DNA ligase [Listeria monocytogenes FSL N3-165]
          Length = 671

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/710 (35%), Positives = 381/710 (53%), Gaps = 64/710 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N EDL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +     
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAG 235

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  +  LG  VN   R  ++   + +Y  E    R+ L YDIDG+V K++    Q+Q+G 
Sbjct: 236 LDMLETLGLKVNKERRLCSSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGT 295

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNED
Sbjct: 296 TVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNED 355

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP C
Sbjct: 356 LIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPTC 404

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F  
Sbjct: 405 DSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQ 457

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F L
Sbjct: 458 ----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFGL 507

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA+ A+SLA ++ +  N        + + ND          +G+ +A +IV ++ 
Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKVADKETLTNIND----------IGEKMADSIVTYFA 557

Query: 618 NPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQE 668
           N      V  LL+E+  +       G   +++S E      K +V TG L+K+ R+ A+ 
Sbjct: 558 NEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKA 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 614 LIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|312793814|ref|YP_004026737.1| DNA ligase, nad-dependent [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180954|gb|ADQ41124.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 673

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 250/703 (35%), Positives = 391/703 (55%), Gaps = 49/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  +
Sbjct: 6   KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     +V H +P LSL  ++N  +L  F  R+       + +   + +E KIDG 
Sbjct: 63  VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K++
Sbjct: 120 SVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKDE 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  + +  E   +   E
Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNV-QWCEKEIETHAE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   G
Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ATAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCT G+ C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+         + N+  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 RG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S       I+++     D  LSL   P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEDQLLSL---PDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E  LK    +    +K  S  ++    V TG L K  R++A+E +  LGA 
Sbjct: 559 RQEQTRHLIER-LKAAGVNTVSEKKAKSDILKGYTFVLTGALSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660


>gi|254993539|ref|ZP_05275729.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-064]
          Length = 665

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 257/711 (36%), Positives = 382/711 (53%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N EDL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+  +    
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL+E+  +       G   +++S E      K +V TG L+K+ R+ A+
Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|312877316|ref|ZP_07737282.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795879|gb|EFR12242.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A]
          Length = 673

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 250/703 (35%), Positives = 391/703 (55%), Gaps = 49/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  +
Sbjct: 6   KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     +V H +P LSL  ++N  +L  F  R+       + +   + +E KIDG 
Sbjct: 63  VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K++
Sbjct: 120 SVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKDE 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  + +  E   +   E
Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNV-QWCEKEIETHAE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   G
Sbjct: 237 ALEFLKRLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ATAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCT G+ C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+         + N+  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 RG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S       I+++     D  LSL   P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEDQLLSL---PDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E  LK    +    +K  S  ++    V TG L K  R++A+E +  LGA 
Sbjct: 559 RQEQTRHLIER-LKAAGVNTVSEKKAKSDILKGYTFVLTGALSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660


>gi|312127350|ref|YP_003992224.1| DNA ligase, nad-dependent [Caldicellulosiruptor hydrothermalis 108]
 gi|311777369|gb|ADQ06855.1| DNA ligase, NAD-dependent [Caldicellulosiruptor hydrothermalis 108]
          Length = 673

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/703 (35%), Positives = 393/703 (55%), Gaps = 49/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  +
Sbjct: 6   KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     +V H +P LSL  ++N  +L  F  R+       + +   + +E KIDG 
Sbjct: 63  VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K++
Sbjct: 120 SVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLKLKEDIS--IVVRGEVFMPKDE 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  + +  E   +   +
Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNV-QWCEKELETHAQ 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   G
Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCT G+ C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+         + N+  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 RG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S       I+++     +  LSL   P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEEQLLSL---PDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E  LK    +    +K  S  ++    V TGTL K  R++A+E +  LGA 
Sbjct: 559 RQDQTRHLIER-LKAAGVNTVSEKKAKSDILKGYTFVLTGTLSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  ++VG +PGSK  KAQQLG+KI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVVVGQDPGSKFTKAQQLGIKILNEEDFEKLVK 660


>gi|314934069|ref|ZP_07841432.1| DNA ligase, NAD-dependent [Staphylococcus caprae C87]
 gi|313653180|gb|EFS16939.1| DNA ligase, NAD-dependent [Staphylococcus caprae C87]
          Length = 667

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 251/703 (35%), Positives = 392/703 (55%), Gaps = 62/703 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+   +   + P  ++G
Sbjct: 10  ELHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIDIEEKHPEYKTA---DSPTVRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N EDLRKF  RI     + +   + +  E KIDG  +
Sbjct: 64  GEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDNIGKVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y+ G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+ +  F+
Sbjct: 119 SLKYQNGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYMPRRSFM 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A  Q E L
Sbjct: 177 NLNAEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTDFDATTQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           Q +  LGF  N    +     G++ Y ++    R +L YDIDG+V KV++   Q+++G  
Sbjct: 237 QGLDDLGFKTNQERERVADIDGVLDYIDKWTEKRESLSYDIDGIVIKVNDLDQQEEMGYT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  ++LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVSKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+ CP C 
Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPKDAETYHMPTHCPSCD 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   +++E
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQQLYENE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L+        ++      G   V NL  +I K ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLKEEDLLPLERM------GSKKVENLLAAIEKAKDNSLEHLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ LA+ Y       + ++ ++    ++   L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKASQVLAEKY-------ETMDRLLDVTEEE---LVAIHDIGDKLAQSVVTYLEN 558

Query: 619 PRNICAVEALLKEVSPSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRHKAQEYVT 671
             +I A+   LK+   ++  + K + +SEIE       K +V TG L+++ R +A +++ 
Sbjct: 559 -EDIRALIQKLKD--KNVNMNYKGIKTSEIEGHPEFNGKTIVLTGKLEQMTRSEATQWLE 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             GA V+  +++ TDI+I G + GSKL KA++ G +I  E++F
Sbjct: 616 MQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKFGKEIWTEDEF 658


>gi|289550377|ref|YP_003471281.1| DNA ligase [Staphylococcus lugdunensis HKU09-01]
 gi|289179909|gb|ADC87154.1| DNA ligase [Staphylococcus lugdunensis HKU09-01]
          Length = 667

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 251/701 (35%), Positives = 387/701 (55%), Gaps = 56/701 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+   ++ P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTTDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N EDL++F  RI     +     + +  E KIDG  +
Sbjct: 64  GEAQSSFEKVRHDTPMLSLGNAFNEEDLKRFDQRI-----RDHIGEVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++YE GKFV    RGDG +GED++  +R I  IP  L L  P   EVRGE Y+ +  F+
Sbjct: 119 SLKYENGKFVQGLTRGDGTTGEDITENLRTIHAIP--LKLKEPLNFEVRGEAYMPRASFM 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
           +LN +      +P+ANPRNAA+G LR+L+      R L+ F++ +   S+  A  Q + L
Sbjct: 177 SLNKQKEKNNEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFSDFNATTQSDAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N      +   G+++Y  +  + R +L YDIDG+V KV++ + Q+++G  
Sbjct: 237 DELDRLGFKTNKERECVSDIDGVLAYIEKWTAKRESLAYDIDGIVIKVNDLAQQEEMGYT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  TRLLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTRLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I+  R  DA+ +  P+ CP C 
Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIERRPNDAETYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            ++VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++ E
Sbjct: 406 HKLVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQHE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I+K ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLERM------GKKKVENLLQAIDKAKSNSLEHLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+GA+ +  LA+ Y       + I  ++    D+   LI +  +GD +AQ++V + +N
Sbjct: 509 IRHLGAKASYVLAEKY-------ETIERLLTVTEDE---LISIHDIGDKLAQSVVTYLEN 558

Query: 619 PRNICAVEALL-KEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
                 +  L  K+V+ +   +   E     E ++K +V TG L+++ R +A +++   G
Sbjct: 559 EDIQSLISKLANKDVNMTFKGVKISELAGHPEFQDKTIVLTGKLEQMTRKEAADWLQLQG 618

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           A V+  +++ TD++I G++ GSKL KAQ+ G +I +E  F+
Sbjct: 619 AKVTNSVTKNTDLVIAGEDAGSKLTKAQKFGTEIWSESDFI 659


>gi|283779823|ref|YP_003370578.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068]
 gi|283438276|gb|ADB16718.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068]
          Length = 676

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/707 (34%), Positives = 388/707 (54%), Gaps = 58/707 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           L +L + I  HD  YY  ++P I D EYD L +    I  +FP+L     P+ P  ++G 
Sbjct: 12  LQALREAIRRHDYLYYVRAQPEISDLEYDRLMQDLTTIEASFPELV---TPDSPTQRVGE 68

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E    L +V H  P LS+E  + +EDL+KF  R  +     D  ++ + +E K+DG  I+
Sbjct: 69  EPMEGLVQVAHRAPMLSIENSYTVEDLQKFAERTSKSL---DGEAVEWVVELKVDGVAIS 125

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           +RYE G  V A  RG+G  G+DV+  +R I  +P R+    IP ++EVRGEVY++ +D +
Sbjct: 126 VRYENGLLVQALTRGNGEVGDDVTHNVRTIADVPLRLYGDKIPAVLEVRGEVYMTNSDLV 185

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
            LN     +G++ YAN RN ASG +R L+P     R L   VHG+G    + A+   + L
Sbjct: 186 LLNKRQQELGKELYANTRNVASGTIRLLDPKLCAERKLRMLVHGVGVCEGMTAENHMQFL 245

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +++  LG P     +   TF   V Y  E+      L +++DGLV KV+ F  + +LG+R
Sbjct: 246 EQVSSLGLPPTPHCKCFATFSEAVKYCEEIPERLHELDFEVDGLVLKVNRFDQRAKLGQR 305

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           ++SPRW+I++KF + +A+T+LL I +Q+G+TG +TPVA LEPV + G  ++ A+LHN D 
Sbjct: 306 SKSPRWVIAYKFEKYEATTKLLGISVQVGKTGAITPVAELEPVQLAGTTVSRASLHNAD- 364

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
                   +++R  +DIR+GD V+V++AG++IP +V +   ER  D   F FP+ CP+C 
Sbjct: 365 --------EIVR--KDIRIGDIVVVEKAGKIIPHIVRVEAAERTTDLPVFQFPTHCPVCG 414

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S V +D   + G  +   RCT   +C AQ  E+L+ F +R A +IEGLG + +D    S+
Sbjct: 415 SDVAKD---EGGVYI---RCTNP-SCPAQLREKLRFFATRGAMDIEGLGDKLVDQLVASK 467

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                +    D++ L   + TS  ++      G+ S T L + I   ++  L R +  L 
Sbjct: 468 ----LVTCYGDLYRLTLDKLTSLERM------GEKSATKLLEGIVASKSRPLSRLLNGLS 517

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G+  ++ LA+++ +     Q      A   D    L RV  VG+I A ++ EF  +
Sbjct: 518 IRHIGSNGSQVLARHFGTLDAIRQ------ATLED----LSRVSEVGEITAASVYEFLHS 567

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEI-------ENKKLVFTGTLQKIQRHKAQEYVT 671
                 ++ L+     ++G + +   S I         K  V TGTL K  R + ++ + 
Sbjct: 568 DYGKTTIDDLV-----ALGLNTQEPKSAIPTGEGIFAGKTFVVTGTLSKFSRDEVEDLIE 622

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + G   S+ +S+KTD ++ G   GSKL KA+ LGVKI++E  F+ LL
Sbjct: 623 KHGGKASSSVSKKTDYLLAGAEAGSKLAKAESLGVKILSEADFIALL 669


>gi|188997338|ref|YP_001931589.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1]
 gi|254781435|sp|B2V5U1|DNLJ_SULSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188932405|gb|ACD67035.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 704

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 257/724 (35%), Positives = 394/724 (54%), Gaps = 57/724 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+ E+A+K +  L + I +HD  YY  ++P+I D EYD L +    I   +P+L     P
Sbjct: 25  LTKEEAKKIVEDLREVIRFHDWRYYVLAQPVISDYEYDKLFKLLKDIEGKYPELI---TP 81

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++  E+     +V H  P LSL+  +N  DLR F  R+         + + +++E
Sbjct: 82  DSPTQRVPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVRELTGL---DKVEYSVE 138

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRG 189
           PK DG  I++ YEK  FV  A RGDG  GE+++  ++ I TIP     +   I  +E+RG
Sbjct: 139 PKFDGAGISLIYEKDLFVRGATRGDGEVGEEITNNLKVIKTIPLSAKFSQYGIDKVEIRG 198

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EV I K+ F  +N+E +  G   +ANPRNAA+G +R  +P+++  R L  FV+ +    +
Sbjct: 199 EVLIRKDLFKKMNEERLEEGLPLFANPRNAAAGSIRLQDPSEVAKRNLEAFVYQITYAEK 258

Query: 249 -------IFAKGQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPYDID 300
                     K   + ++ +  LGF     V +       ++ Y  E +  R   PY+ID
Sbjct: 259 DGKNLLGTVLKKHSDNIKMLHELGFKTPYPVMKVCIGIEEVIQYCEEWQRKRDAYPYEID 318

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KV++ SL  +LG  +  PRW I+ KF  +QA+T+++++  Q+GRTG +TPVA+LEP
Sbjct: 319 GMVIKVNDISLYDKLGFTSHHPRWAIAFKFKARQATTKIINVVFQVGRTGAITPVAKLEP 378

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V IGG ++++ +L NED+I+            +DIR+GD VLV+RAG+VIP VV +I   
Sbjct: 379 VEIGGVIVSSVSLINEDFIR-----------EKDIRIGDTVLVERAGDVIPYVVMVIKEA 427

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  + +P  FP  CP C S +V+          A +RC   + C AQ +ERL HF S+DA
Sbjct: 428 RTGNEKPIEFPKTCPSCGSPIVKPPGE------AVYRCV-NINCPAQVIERLIHFASKDA 480

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GL +  +  F+  +     +R   DI+ L          I+NI GFG  SV NL +
Sbjct: 481 MDIKGLSEATIRKFYNLK----LVRTIPDIYRL------DYNLIKNIPGFGPKSVENLKN 530

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I + +   L R I+ LGIR+VG   A++L          A  +  I    N     L++
Sbjct: 531 AIEESKKRPLYRLIYGLGIRYVGEVTAKTL----------ASAVRCIDDLKNFTITDLMK 580

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +P +G  +A  I  F+ N  N+  +E  L+E+       E+    ++     VFTGTL+ 
Sbjct: 581 LPDIGYKVASEIYNFFHNQENLKMIEE-LRELRVKTCHEEEEKKGKLAGLNFVFTGTLKC 639

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
             R KA+E V  LG  V   +S+K   ++VG+ PGSKL+KAQ+LG VKI+NEE+FL L+ 
Sbjct: 640 CSREKAKEIVESLGGNVLDTVSKKVHYLVVGEEPGSKLQKAQKLGTVKIINEEEFLKLIG 699

Query: 720 QYNT 723
             NT
Sbjct: 700 GENT 703


>gi|289435095|ref|YP_003464967.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171339|emb|CBH27881.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 671

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 258/711 (36%), Positives = 383/711 (53%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLQIEAAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N  DL  F  RI    + K    I +  E KIDG  
Sbjct: 62  GGEVLEGFQKVAHDTPMLSLANAFNKGDLADFDRRI----RDKVGEDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YEKGK+   A RGDG +GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+      +
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVTTHSD 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R       + +Y +E    R+ L YDIDG+V K+++   Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER  + +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGEEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CGSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI + +  SLE+ +F 
Sbjct: 457 H----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEQSKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFETMDNLKLADKETLTSIND----------IGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL E+  +       G   +N+S E      K +V TG L+++ R+ A+
Sbjct: 557 ANEE----VHDLLDELKRANVNMTYTGPKLENMSEEELIFAGKTVVLTGKLEQLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +E   +  L
Sbjct: 613 SLIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYL 663


>gi|242371787|ref|ZP_04817361.1| DNA ligase [Staphylococcus epidermidis M23864:W1]
 gi|242350488|gb|EES42089.1| DNA ligase [Staphylococcus epidermidis M23864:W1]
          Length = 667

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/706 (35%), Positives = 384/706 (54%), Gaps = 68/706 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+   +   + P  ++G
Sbjct: 10  ELHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIEIETEHPEYKTA---DSPTVRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N EDLRKF  RI     +++  ++ +  E KIDG  +
Sbjct: 64  GEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RENIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y+ GKFV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+ +  F+
Sbjct: 119 SLKYQDGKFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYMPRRSFM 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN +    G +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A  Q   L
Sbjct: 177 NLNKQKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFTDFNATTQSGAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + +   G++ Y  +    R +L YDIDG+V KV++   Q+++G  
Sbjct: 237 NELDQLGFKTNQERERVSDIEGVLKYIEKWTDKRESLSYDIDGIVIKVNDLDQQEEMGYT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+ CP C 
Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPDDAETYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   +++E
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQQLYENE 458

Query: 499 DPAFSIRIPADIFTLQRR-----QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                I+  ADIF LQ       ++  T K+EN+L            +I K ++ S E  
Sbjct: 459 ----LIKDVADIFYLQEEDLLPLERMGTKKVENLLA-----------AIEKAKDNSFEHL 503

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIRH+G + ++ LA+ Y +     +               L+ +  +GD +AQ++V
Sbjct: 504 LFGLGIRHLGVKASQVLAEKYETMDRLLEVTE----------AELVEIHDIGDKLAQSVV 553

Query: 614 EFYQNPRNICAVEALLKEVS-----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            + +N  +I A+   LK+ +       I   E     E   K +V TG L+++ R +A +
Sbjct: 554 TYLEN-EDIRALIQKLKDKNVNMSYKGIKTTEIEGHPEFSGKTIVLTGKLEQMTRSEASQ 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  EE+F
Sbjct: 613 WLEMQGAKVTNSVTKSTDIVIAGADAGSKLTKAEKFGTEIWTEEEF 658


>gi|71275191|ref|ZP_00651478.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon]
 gi|170731182|ref|YP_001776615.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M12]
 gi|71164000|gb|EAO13715.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon]
 gi|167965975|gb|ACA12985.1| DNA ligase (NAD(+)) [Xylella fastidiosa M12]
          Length = 837

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/688 (36%), Positives = 372/688 (54%), Gaps = 107/688 (15%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP++     Q   EL    QE +YH   Y+   +P I D++YD + R  DA+   +PDL
Sbjct: 7   MIPLDP---AQRAAELRRRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEATYPDL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +  + +
Sbjct: 61  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRIT---ARLGETA 114

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP R+ S   P +
Sbjct: 115 PSFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 174

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+P     R L+F+ +G+
Sbjct: 175 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 234

Query: 244 GKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ ++ +      E+L  +R  GFPV+  V       G+++YY  M++IR TLP+DIDG+
Sbjct: 235 GEVADDVSFHSHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q ++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 295 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 355 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P    +S P  CP+C S +VR+    TG   A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 404 PGVTAWSMPMACPVCGSEIVRE----TG--AAVWRCSGELACPAQRKEAIRHFVSRRAMD 457

Query: 483 IEGLGKQQLDFFF--------------------------KSEDPAFSIRIPADIFTLQRR 516
           +EGLG + ++                              ++ P   +R   D  T  R 
Sbjct: 458 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 517

Query: 517 QQTSTTKIENIL--------GFGDVS--------------------------VTNLYDSI 542
           QQ     +E IL        G GDV                             NL  +I
Sbjct: 518 QQ-----LEEILRTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAI 572

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           ++ R  +LERF+F+LG+ HVG   A++LA    S+ + A     II      W     VP
Sbjct: 573 DRSRQTTLERFLFALGMTHVGETTAKALAH---SFGDLA-----II--RQLPWPLFKCVP 622

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK 630
            +G  +A+AI  F   P N  A++ L++
Sbjct: 623 DIGGEVARAIGHFMDQPANQQAIDDLVE 650



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 11/121 (9%)

Query: 609 AQAIVEFYQNPRNIC-------AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           AQ++ E++Q+P NI          + LL ++ PS  R     ++ +  + +V TG L  +
Sbjct: 719 AQSLTEWFQSPDNISLARRLQHCCDVLLAQL-PSPDRAH---TAPLNGQSVVLTGKLASL 774

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A   +  LGA +   +S+KT  ++ G++PGSKL+KA  L V I +E + L  L+QY
Sbjct: 775 TREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHALHVDIWDEARLLDFLEQY 834

Query: 722 N 722
           +
Sbjct: 835 S 835


>gi|283471175|emb|CAQ50386.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 667

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/701 (35%), Positives = 383/701 (54%), Gaps = 56/701 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + +   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C 
Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558

Query: 619 PRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
                 ++ L    +  +   I   +     E   K +V TG L ++ R++A +++T  G
Sbjct: 559 EDIRALIQKLKYKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLTSQG 618

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           A V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+
Sbjct: 619 AKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659


>gi|327475239|gb|AEA77214.1| DNA ligase [Bacillus sp. 15.4]
          Length = 668

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 257/711 (36%), Positives = 394/711 (55%), Gaps = 60/711 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S EQ   EL +L  + +Y    Y+   KP + D+EYD +     AI + FP+L R+ D  
Sbjct: 5   SAEQKVAELHNLLNQYNYE---YHVLDKPSVPDAEYDRVMNELIAIENKFPEL-RTAD-- 58

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG    +  KV H  P LSL   +N EDLR F  ++ +     DD S  +  E 
Sbjct: 59  SPTQRVGGSTLQAFEKVQHRTPMLSLGNAFNKEDLRDFDRKVRQ--AAGDDYS--YVCEL 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGE 190
           KIDG  +++RYE G F   A RGDG  GED++A ++ I +IP    L IPE   +EVRGE
Sbjct: 115 KIDGLAVSLRYEDGLFRQGATRGDGTVGEDITANLKTIKSIP----LRIPEPMTMEVRGE 170

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
            ++ K  F ALN        +P+ANPRNAA+G LR+L+P    +R L+ +++ +    E 
Sbjct: 171 AFMPKRSFEALNKAKEEREEEPFANPRNAAAGSLRQLDPRIAASRNLDIYLYSIADVGET 230

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                   L  +   GF  N   ++  T   ++ Y       R  L YDIDG+V KVD  
Sbjct: 231 GVVSHSSGLDLLDKFGFKTNKERKKCQTIDEVIEYVEGWVERRPDLQYDIDGIVIKVDSL 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG  A+SPRW I++KF  ++  T+L +I++ +GRTG++TP A LEPV + G  + 
Sbjct: 291 ELQEQLGTTAKSPRWAIAYKFPAEEVVTQLKEIELSVGRTGVVTPTAILEPVRVAGTTVQ 350

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DI++GD V+VK+AG++IP+VV+++   R    + F 
Sbjct: 351 RASLHNEDLIR-----------EKDIKIGDYVVVKKAGDIIPEVVNVLEERRTGGEKDFL 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C+S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 400 MPEGCPECESGLVR----LEGEV--ALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEK 452

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   FK       I   ADI+ L+R Q     ++      G+ SV NL ++I   +  S
Sbjct: 453 VISQLFKE----GLIEDVADIYRLERDQLLQLERM------GEKSVDNLLNAIEASKANS 502

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LE+ +F LGIRHVGA+ A++LA      Q F  +I+ ++  + DD   L  +  +GD +A
Sbjct: 503 LEKLLFGLGIRHVGAKAAKTLA------QEFG-DIDTLMNASKDD---LTAINEIGDKMA 552

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRH 664
            A+V +++    +  +  L      +  +  K V +E        + +V TG ++++ R+
Sbjct: 553 DAVVAYFEKEEAVELIGELRTAGVNTEYKGPKPVKAEEIDSYFAGRTVVLTGKMEQLGRN 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +A++ + +LG  V+  +S+KTD++I G+  GSKL KAQ+L ++I +EE+ L
Sbjct: 613 EAKQKIEELGGKVTGSVSKKTDLLIAGEEAGSKLAKAQELDIEIWDEEKLL 663


>gi|291278945|ref|YP_003495780.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1]
 gi|290753647|dbj|BAI80024.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1]
          Length = 663

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 254/708 (35%), Positives = 395/708 (55%), Gaps = 58/708 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   KE   L  EI+YHD  YY  + P+I D EYD L +R   I   +P++     P  P
Sbjct: 3   ESILKEYQKLVDEINYHDYRYYVLNDPVISDYEYDQLYKRLKEIESKYPEII---SPYSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G     +L  V H +  LSL+  +N  +L+ F  R+ +  +        F +EPKI
Sbjct: 60  TQRVGYAPVSNLKTVKHEVKMLSLDNTYNEGELKDFYNRVLKNLESVPS----FVVEPKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ YE G     A RGDG +GEDV+  ++ I +IP  L + +   + VRGEV++ 
Sbjct: 116 DGAAVSLTYEDGILQIGATRGDGVTGEDVTHNVKTIKSIP--LKIAVKGKLVVRGEVFLP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG--LGKTSEIFA 251
           K++F  +NDE +  G +P+ANPRNAA+G L+ L+P     R L+ F++   +G+  +   
Sbjct: 174 KSEFERINDERVKNGLEPFANPRNAAAGTLKLLDPRIAAQRNLDIFIYSVDIGRKHDT-- 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++ L  ++ LGF VN  +++  +F  I+S+   +  +R  L Y+IDG V KV+E+S 
Sbjct: 232 --HFDDLNYLKGLGFKVNPLIKKVESFEDIISHIENLGKMRDELDYEIDGAVIKVNEYSY 289

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLGE  + PRW ++ K+  +  +T L D+  Q+GRTGI+TPVA LEPV+I G+++  A
Sbjct: 290 QEQLGETIKYPRWAVAFKYPPELKTTVLKDVIFQVGRTGIITPVAVLEPVHISGSVVKRA 349

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED I+ L           D+++GD V V+++GE+IPK++ ++  +R    +   FP
Sbjct: 350 TLHNEDEIRRL-----------DVKIGDTVFVEKSGEIIPKIIKVVKEKRTGKEKEIVFP 398

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C   +VR  N       A + C     CSA+    + HF SRDA +I+GLG+  +
Sbjct: 399 EKCPVCNG-LVRKEN-------AYYVCLNP-DCSAKLKASIIHFASRDAMDIKGLGEAIV 449

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F    D  F ++  ADI+TL         KI  + GFG  S  NL  SI   +N S +
Sbjct: 450 ERFV---DLGF-LKSIADIYTLD------FEKIALLDGFGKKSAENLKKSIEDSKNRSFD 499

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +++LGIRHVG + AR L  ++           NI          L+ +  VG+IIA++
Sbjct: 500 RVLYALGIRHVGIKTARILTNHF----------KNIEKLQKATIEELVSIDEVGEIIAKS 549

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +    ++   +  +E L    +  S+   ++N S +++  K V TGTL K  R+   E +
Sbjct: 550 VYYTLRDENFLKLIERLKSYGLKFSMEDDKENKSEKLKGLKFVITGTLSK-PRNYYVELI 608

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +LG  VS+ +S+KTD +IVG++PGSK  KA  LGVK +NEE+F  L+
Sbjct: 609 EKLGGEVSSSVSKKTDYVIVGEDPGSKYNKAISLGVKTINEEEFYKLI 656


>gi|226224361|ref|YP_002758468.1| DNA ligase [Listeria monocytogenes Clip81459]
 gi|254781359|sp|C1KW57|DNLJ_LISMC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225876823|emb|CAS05532.1| Putative DNA ligase [Listeria monocytogenes serotype 4b str. CLIP
           80459]
          Length = 671

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 257/711 (36%), Positives = 382/711 (53%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N EDL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+  +    
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL+E+  +       G   +++S E      K +V TG L+K+ R+ A+
Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|171914081|ref|ZP_02929551.1| DNA ligase, NAD-dependent [Verrucomicrobium spinosum DSM 4136]
          Length = 669

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/714 (34%), Positives = 387/714 (54%), Gaps = 56/714 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A ++E A   ++ L +EI +H+  YYQ + P I D  +DAL R    +  A P L     
Sbjct: 4   AAALETASLRVAHLREEIEHHNRLYYQNAAPEISDQAFDALLRELQDLEKAHPSLI---T 60

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  ++GG       ++ H +P +SL+  ++ E++R F  R+ +   ++    +  T+
Sbjct: 61  PDSPTQRVGGTPLDGFKQIAHPVPMMSLDNTYSEEEMRDFFQRLVKGLGRE---KVRCTI 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPK+DG  + +RYE G   YAA RGDG  G+D++  +R I  +P  L   +P+  EVRGE
Sbjct: 118 EPKVDGVAVAVRYEAGALKYAATRGDGRMGDDITQNLRTIRALPLRLPAKVPQTFEVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           VY+++  F  +N E    G   +ANPRNA +G L++L+P  +  R L    +G+G   E 
Sbjct: 178 VYMTRAGFDKMNQEREEAGEPRFANPRNATAGSLKQLDPRLVAKRPLQVIFYGVGDVGEA 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q ++ + +   G P+   +  A +   +++  +++   R  LPYD DG V KVD F
Sbjct: 238 RLTSQDDIHKLLHDAGLPMAAHIWHAESADEVIAAIHQLDEKRKALPYDTDGAVVKVDAF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ LG  +++PRW I++K+  +QA TRLL +DIQ+GRTG LTPVARL PV + G+ ++
Sbjct: 298 AEQRDLGATSKAPRWAIAYKYQPEQAETRLLSVDIQVGRTGALTPVARLVPVFLSGSTVS 357

Query: 370 NATLHN-EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           NATLHN E+ ++            +DIRVGD V++++AGE+IP VV +   +R  + +  
Sbjct: 358 NATLHNFEEIVR------------KDIRVGDFVIIEKAGEIIPAVVAVNKEKRTGEEKEV 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+CQS VV+D      +   A RCT    C  Q   RL+HF  R A +I GLG+
Sbjct: 406 PVPVHCPVCQSPVVKD------EAQVAIRCTNP-NCPEQVKRRLEHFTHRGAMDIRGLGE 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           Q +       D   +I  PAD++ L      +T  +  +   G  S+ NL   + + +  
Sbjct: 459 QMVAQLV---DAHLAI-TPADLYDL------NTHALSKLERQGAKSIENLLKGLEESKKQ 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  R IF LGI HVGA  ARSL  ++ +    A+      A   D    L++V  +G I+
Sbjct: 509 APWRLIFGLGILHVGASSARSLMDHFGAVDALAR------ASVED----LLKVQDIGGIV 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRH 664
           AQ+I  ++Q P N    +ALL  +  S  + +    +  S        V TGTL + +  
Sbjct: 559 AQSIHGWFQVPAN----QALLDRLRSSGLQFDNPKTEQASDTFAGTSWVITGTLSESREV 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            A+   T  G +VS++ S KT  ++ G+  GSKLEKA +LGVK+++E  F  +L
Sbjct: 615 IAELIRTHGGKMVSSV-SSKTTYLLAGEEAGSKLEKAAKLGVKVLSEADFRAML 667


>gi|28199807|ref|NP_780121.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa Temecula1]
 gi|182682559|ref|YP_001830719.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M23]
 gi|81438262|sp|Q87A88|DNLJ_XYLFT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254782314|sp|B2I9S4|DNLJ_XYLF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28057928|gb|AAO29770.1| DNA ligase [Xylella fastidiosa Temecula1]
 gi|182632669|gb|ACB93445.1| DNA ligase, NAD-dependent [Xylella fastidiosa M23]
 gi|307578838|gb|ADN62807.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 831

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 251/688 (36%), Positives = 374/688 (54%), Gaps = 107/688 (15%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP++     Q   EL    QE +YH   Y+   +P I D++YD + R  DA+   +PDL
Sbjct: 1   MIPLDP---AQRAAELRRRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEATYPDL 54

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +  + +
Sbjct: 55  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRIT---ARLGETA 108

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP R+ S   P +
Sbjct: 109 PGFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 168

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+P     R L+F+ +G+
Sbjct: 169 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 228

Query: 244 GKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ ++  A  ++ E+L  +R  GFPV+  V       G+++YY  M++IR TLP+DIDG+
Sbjct: 229 GEVTDDVAFHRHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 288

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q ++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 289 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 348

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ TLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 349 VAGVTVTSVTLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 397

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P A  +S P  CP+C S +VR+    TG   A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 398 PGATAWSMPMACPVCGSEIVRE----TG--AAVWRCSGELACPAQRKEAIRHFVSRRAMD 451

Query: 483 IEGLGKQQLDFFF--------------------------KSEDPAFSIRIPADIFTLQRR 516
           +EGLG + ++                              ++ P   +R   D  T  R 
Sbjct: 452 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 511

Query: 517 QQTSTTKIENIL--------GFGDVS--------------------------VTNLYDSI 542
           QQ     +E IL        G GDV                             NL  +I
Sbjct: 512 QQ-----LEEILRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAI 566

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           ++ R  +LERF+F+LG+ HVG   A++LA    S+ + A     II      W     VP
Sbjct: 567 DRSRQTTLERFLFALGMTHVGETTAKALAH---SFGDLA-----II--RQLPWPLFKCVP 616

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK 630
            +G  +A+AI  F   P N  A++ L++
Sbjct: 617 DIGGEVARAIGHFMDQPANQQAIDDLVE 644



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 13/122 (10%)

Query: 609 AQAIVEFYQNPRNI--------CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           AQ++ E++Q+P NI        C    L + +SP     ++  ++ +  + +V TG L  
Sbjct: 713 AQSLTEWFQSPDNISLARRLQHCCDVLLAQLLSP-----DRAHTAPLNGQSVVLTGKLAS 767

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R  A   +  LGA +   +S+KT  ++ G++PGSKL+KA  L V I +E + L  L+Q
Sbjct: 768 LTREAAATRLESLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHALHVDIWDEARLLAFLEQ 827

Query: 721 YN 722
           Y+
Sbjct: 828 YS 829


>gi|71899829|ref|ZP_00681979.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
 gi|254782317|sp|B0U5G7|DNLJ_XYLFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71730420|gb|EAO32501.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
          Length = 831

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/688 (36%), Positives = 372/688 (54%), Gaps = 107/688 (15%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP++     Q   EL    QE +YH   Y+   +P I D++YD + R  DA+   +PDL
Sbjct: 1   MIPLDP---AQRAAELRRRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEATYPDL 54

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +  + +
Sbjct: 55  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRIT---ARLGETA 108

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP R+ S   P +
Sbjct: 109 PSFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 168

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+P     R L+F+ +G+
Sbjct: 169 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 228

Query: 244 GKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ ++ +      E+L  +R  GFPV+  V       G+++YY  M++IR TLP+DIDG+
Sbjct: 229 GEVADDVSFHSHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 288

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q ++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 289 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 348

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 349 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 397

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P    +S P  CP+C S +VR+    TG   A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 398 PGVTAWSMPMACPVCGSEIVRE----TG--AAVWRCSGELACPAQRKEAIRHFVSRRAMD 451

Query: 483 IEGLGKQQLDFFF--------------------------KSEDPAFSIRIPADIFTLQRR 516
           +EGLG + ++                              ++ P   +R   D  T  R 
Sbjct: 452 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 511

Query: 517 QQTSTTKIENIL--------GFGDVS--------------------------VTNLYDSI 542
           QQ     +E IL        G GDV                             NL  +I
Sbjct: 512 QQ-----LEEILRTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAI 566

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           ++ R  +LERF+F+LG+ HVG   A++LA    S+ + A     II      W     VP
Sbjct: 567 DRSRQTTLERFLFALGMTHVGETTAKALAH---SFGDLA-----II--RQLPWPLFKCVP 616

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK 630
            +G  +A+AI  F   P N  A++ L++
Sbjct: 617 DIGGEVARAIGHFMDQPANQQAIDDLVE 644



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 11/121 (9%)

Query: 609 AQAIVEFYQNPRNIC-------AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           AQ++ E++Q+P NI          + LL ++ PS  R     ++ +  + +V TG L  +
Sbjct: 713 AQSLTEWFQSPDNISLARRLQHCCDVLLAQL-PSPDRAH---TAPLNGQSVVLTGKLASL 768

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A   +  LGA +   +S+KT  ++ G++PGSKL+KA  L V I +E + L  L+QY
Sbjct: 769 TREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHALHVDIWDEARLLDFLEQY 828

Query: 722 N 722
           +
Sbjct: 829 S 829


>gi|47092911|ref|ZP_00230693.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858]
 gi|254825997|ref|ZP_05230998.1| DNA ligase [Listeria monocytogenes FSL J1-194]
 gi|254853668|ref|ZP_05243016.1| DNA ligase [Listeria monocytogenes FSL R2-503]
 gi|254932796|ref|ZP_05266155.1| DNA ligase [Listeria monocytogenes HPB2262]
 gi|300765954|ref|ZP_07075926.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017]
 gi|47018737|gb|EAL09488.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858]
 gi|258607047|gb|EEW19655.1| DNA ligase [Listeria monocytogenes FSL R2-503]
 gi|293584349|gb|EFF96381.1| DNA ligase [Listeria monocytogenes HPB2262]
 gi|293595236|gb|EFG02997.1| DNA ligase [Listeria monocytogenes FSL J1-194]
 gi|300513340|gb|EFK40415.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017]
 gi|328466510|gb|EGF37653.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 1816]
 gi|328473899|gb|EGF44721.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 220]
 gi|332312198|gb|EGJ25293.1| DNA ligase [Listeria monocytogenes str. Scott A]
          Length = 671

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 257/711 (36%), Positives = 382/711 (53%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N EDL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+  +    
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIQASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL+E+  +       G   +++S E      K +V TG L+K+ R+ A+
Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|62185205|ref|YP_219990.1| NAD-dependent DNA ligase LigA [Chlamydophila abortus S26/3]
 gi|81312632|sp|Q5L5Q2|DNLJ_CHLAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|62148272|emb|CAH64037.1| putative DNA ligase [Chlamydophila abortus S26/3]
          Length = 660

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/705 (35%), Positives = 395/705 (56%), Gaps = 54/705 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           +R++  SL ++I   D  YY    P I D +YD   R+  +I    P+      P+    
Sbjct: 6   SREQYISLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLWSPS---M 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G   + S   V H+ P LS+   + +E+L +F +RI    +K    +  +TLE KIDG
Sbjct: 63  RLGDRTSGSFPIVAHAHPMLSIANAYTLEELYEFFSRI----EKTLGYTPKYTLEIKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + IRYE+   V A  RG+G  GED++A IR I ++P  LS   PE +EVRGEV+ S+ 
Sbjct: 119 IAVAIRYEQRVLVQALSRGNGRKGEDITANIRTIRSLPLRLSKEAPEFLEVRGEVFFSRA 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  +N       +  +ANPRNAA G L+ L+  +  +  N  +   G  +E   +  YE
Sbjct: 179 TFCQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQR-NLEISIYGSLAEENKRSHYE 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L   +  GFPV    RQ  T   +V+  +E++  R+ LP +IDG+V KVD+   QK LG
Sbjct: 238 NLLLCKEWGFPVFGQPRQCQTIEKVVASLHEIEVARAQLPMEIDGVVIKVDDIEDQKVLG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+  RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+ ++ A+L+NE
Sbjct: 298 MTAKHYRWALAYKYAPERAETILEDIIVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNE 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V V++ GE+IP+VV + + +R    QP+  P +CP+
Sbjct: 358 DEIE-----------RKDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGTQPWVMPEYCPV 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  +V R+ +        + RCT  L CSA  +E+++ F  RDA +I+ LG++ +   F 
Sbjct: 407 CHQKVTRESDK------VSVRCTNSL-CSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFD 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I    DIF      Q +   +  + GF D S+ N+  SI K +++ L+RFI +
Sbjct: 460 ----LGCIHRRCDIF------QITEEDLRQVPGFKDKSIRNVLKSIEKAKSVPLDRFITA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A +LA+++LS       + +++A + DD   L  +  +GD +A++IV ++
Sbjct: 510 LGIPYVGIGGANALAQHFLS-------LESVMAASLDD---LKAIEGIGDKVAESIVAYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             P ++  ++ +L     S+G H       SS    K  V TGTL+K+ R +A+ Y+   
Sbjct: 560 HQPEHLEEIQKML-----SLGVHILPCHRASSSCLGKAFVITGTLEKLTRSEAETYIRNC 614

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  V + +S+ TD ++VG +PGSKL++AQ+LGV I++E++ L LL
Sbjct: 615 GGKVGSSVSKNTDYLVVGQDPGSKLKRAQELGVPILSEDELLKLL 659


>gi|238020272|ref|ZP_04600698.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147]
 gi|237868666|gb|EEP69670.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147]
          Length = 797

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 271/808 (33%), Positives = 415/808 (51%), Gaps = 136/808 (16%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA++++ +L  +++ +   YY    P + DSEYD L R  +A+   +P       P  P
Sbjct: 21  QQAQQKIQTLTAQLNQYAHEYYTLDAPTVPDSEYDRLYRELEALETEYPQF---RLPESP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED----------LRKFITRIYRFWQKKDDN 124
            N++GG +      V H++P LSL   ++  D          +R F  R+ +        
Sbjct: 78  TNRVGGAVLDGFETVIHAVPMLSLANAFSPRDDEAGTFDHAEMRAFDERVCKDLGAAHTE 137

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPE 183
              + +EPK DG  I++ Y+ G  + AA RGDG +GEDV+  I+ +  IP R+    +P+
Sbjct: 138 ---YIIEPKFDGLAISLLYQNGILIQAATRGDGTTGEDVTENIKTVRNIPLRLHGDEVPD 194

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVH 241
           +IEVRGEV + K DF ALN   +  G+KP+ANPRNAA+G LR+LN + IT  R L+FF +
Sbjct: 195 LIEVRGEVLMLKADFAALNARQLDAGQKPFANPRNAAAGSLRQLN-SAITAQRKLHFFGY 253

Query: 242 GLGKTSEIF--AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYD 298
           G+ + S  F   +   + ++ +  LGF      +R       ++ +Y  M   R  LPY+
Sbjct: 254 GIARLSTAFRQPENHAQEIELLARLGFSEPQAQIRVCANIQEVLDFYETMAQQRPQLPYE 313

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV++   Q+QLG  +R+PRW I+HKF  ++A T +  ID+Q+GRTG +TPVARL
Sbjct: 314 IDGMVVKVNDLRQQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGSITPVARL 373

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +++
Sbjct: 374 KPVFVGGVTVTNATLHNQDEV-----------ARKDVRVGDTVVVRRAGDVIPEVVRVVL 422

Query: 419 NER------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466
             R             P    F  P  CP+C S V R++    G+ VA  RCTGG+ C A
Sbjct: 423 ERRPMRNVDLLGERQEPQHPAFRLPETCPVCGSAVEREI----GEAVA--RCTGGIVCKA 476

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ-RRQQTSTTKIE 525
           Q+ + L HF SR A +I GLG +Q++   + +D   S    ADI+ L   + QT    I+
Sbjct: 477 QRAQGLIHFASRKAMDIVGLGDKQIEALVE-QDVLHSF---ADIYQLDIAKLQT----IK 528

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--- 582
           +     +    N+ D++   R   L RF+F+LGIRHVG   A+ LA  +  +    +   
Sbjct: 529 DSKSGANKWTHNILDAVAASRQPPLARFLFALGIRHVGESTAKQLAAAFGDWDTVRRAPE 588

Query: 583 -------EINNIIAHN-------------NDDWLSLI----------------------R 600
                  +I +++AH+              DD L  +                      R
Sbjct: 589 PVLACLPDIGSVVAHSIAHFFRLPEQQKLLDDLLHFVSPQEAAIATLVLEYATPARWLAR 648

Query: 601 VP--------------LVGDIIAQAIVE---------FYQNP------RNICAVEALLKE 631
           +P              L G  IAQ + +         + + P      R+I A  A L E
Sbjct: 649 LPDYKISEKRAQELWDLAGGSIAQLLADDALPSDWQAWRRQPENARLLRDIDAFFAQLPE 708

Query: 632 VS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            + P+      ++ +EI  K  V TGTL  ++R +A   +   G  VS  +S+KTD ++ 
Sbjct: 709 HALPADNAVSGSLKNEITGKIFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFVVA 768

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G   GSKLEKAQ LG+ +++EE+ L +L
Sbjct: 769 GAEAGSKLEKAQSLGITVLSEEELLGML 796


>gi|222094064|ref|YP_002528121.1| nad-dependent DNA ligase liga [Bacillus cereus Q1]
 gi|221238119|gb|ACM10829.1| DNA ligase, NAD-dependent [Bacillus cereus Q1]
          Length = 615

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/656 (36%), Positives = 374/656 (57%), Gaps = 55/656 (8%)

Query: 68  SEDPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           SED   P  ++GG + L +F KVTH  P LSL   +N  DLR F  R+    Q  DD ++
Sbjct: 2   SEDS--PSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANV 55

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +  E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E
Sbjct: 56  RYICELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLE 113

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
            RGE Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL  
Sbjct: 114 ARGEAYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLAN 173

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             E       E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V K
Sbjct: 174 VEEKTILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIK 233

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G
Sbjct: 234 VDDVALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAG 293

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++  A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++ ++R  + 
Sbjct: 294 TIVRRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEE 342

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + +  P+ CP C+S +VR L  +      A RC     C AQ  E L HFVSR+A NI+G
Sbjct: 343 EEYHMPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDG 395

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ +   F+++     IR  AD+++L + Q     +      FG+ S TNL  +I   
Sbjct: 396 LGERVITQLFEAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENS 445

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SLER +F LGIRHVGA+ AR+ A+++ +     +     +   N+          +G
Sbjct: 446 KENSLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKAINE----------IG 495

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQ 659
           + +AQ++V ++ N  ++  +    KE   ++          +NV S    K +V TG L+
Sbjct: 496 EKMAQSVVAYFDN-EDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLE 554

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            + R +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL
Sbjct: 555 VMGRSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 610


>gi|46907988|ref|YP_014377.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|81565576|sp|Q71YR0|DNLJ_LISMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46881258|gb|AAT04554.1| DNA ligase, NAD-dependent [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 671

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 255/710 (35%), Positives = 380/710 (53%), Gaps = 64/710 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N EDL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +     
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAG 235

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G 
Sbjct: 236 LDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGN 295

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNED
Sbjct: 296 TVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNED 355

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I             +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP C
Sbjct: 356 LIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPAC 404

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F  
Sbjct: 405 DSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQ 457

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F L
Sbjct: 458 ----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIQASKQNSLEKLLFGL 507

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +IV ++ 
Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYFA 557

Query: 618 NPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQE 668
           N      V  LL+E+  +       G   +++S E      K +V TG L+K+ R+ A+ 
Sbjct: 558 NEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFTGKTVVLTGKLEKLTRNDAKA 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 614 LIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|328957928|ref|YP_004375314.1| NAD-dependent DNA ligase LigA [Carnobacterium sp. 17-4]
 gi|328674252|gb|AEB30298.1| NAD-dependent DNA ligase LigA [Carnobacterium sp. 17-4]
          Length = 645

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/697 (36%), Positives = 386/697 (55%), Gaps = 77/697 (11%)

Query: 41  PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100
           P I D++YD L     A+  AFPDL  ++ P     +IGG +     KV H +P LSL  
Sbjct: 5   PSIPDTDYDKLYNELVALEEAFPDLISNDSPT---QRIGGTILPGFEKVVHEVPMLSLGN 61

Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160
            +N  DL  F  RI    +K  D    +  E KIDG  +++ YEKGK V AA RGDG  G
Sbjct: 62  AFNEGDLLDFDRRI----KKITDQPFSYICELKIDGLAVSLTYEKGKLVRAATRGDGTVG 117

Query: 161 EDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
           E+V+  IR + ++P  L L  P  IEVRGE Y+ K+ F+ LN E    G   +ANPRNAA
Sbjct: 118 ENVTQNIRTVKSVP--LRLKNPYSIEVRGECYMPKDSFIKLNQEREENGEAIFANPRNAA 175

Query: 221 SGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFH 279
           +G LR L+P +   R LN F++ +G   E+ A  Q + L ++  LG   N+  R   T  
Sbjct: 176 AGGLRNLDPKETAKRNLNTFLYTIGDFGELTAVSQEDALHQLDELGLRTNHDRRVFQTIE 235

Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL 339
            + +Y  E +  R+ LPY+IDG+V KV+EF++Q+++G   ++PRW I++KF  ++A T +
Sbjct: 236 EVWAYTQEFQEKRTALPYEIDGIVIKVNEFAVQEEVGFTVKAPRWAIAYKFPAEEAHTVI 295

Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGD 399
            DI+  +GRTG++TP A ++PV + G  +  A+LHNED I             RDIR+ D
Sbjct: 296 RDIEWSVGRTGVVTPTAIMDPVQLAGTTVQRASLHNEDLIH-----------ERDIRLLD 344

Query: 400 RVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV--------RDLNPKTGK 451
            V+V +AG++IP+V  +I++ER  D+QP++ P+ CP C S ++        R +NPK   
Sbjct: 345 TVVVHKAGDIIPEVTRVILDERPEDSQPYAIPTHCPACDSDLIHLEEEVALRCMNPK--- 401

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
                       C AQ  E L HFVSR+A NI+GLG + L   F+ +     +   AD++
Sbjct: 402 ------------CPAQITEGLSHFVSRNAMNIDGLGIRVLMQMFEKD----MVHDVADLY 445

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL   Q  +  KI+      + S  NL ++I+  R+ SLER +F LGIRHVGA+ A+ +A
Sbjct: 446 TLTFDQLVTLDKIK------EKSANNLLNAIDASRSNSLERLLFGLGIRHVGAKAAKLIA 499

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + + + +   Q   ++I               +G+IIA+++V ++  P     V  L++E
Sbjct: 500 ERFETMEAVQQAEKDMIISIE----------GIGEIIAESVVAYFSLPE----VNELIQE 545

Query: 632 VSPS------IGRHE---KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
           +  S      +G+ +     V S    K +V TG L    R +A+E +  LG  V+  +S
Sbjct: 546 LKNSQVNMNYLGKKKVEVATVDSYFNGKTVVLTGKLTHFTREEAKERIENLGGNVTGSVS 605

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +KTD+++ G+  GSKL KA+ L + + +E+Q L  L+
Sbjct: 606 KKTDLVVAGEEAGSKLAKAESLNILVWDEDQLLETLE 642


>gi|239638039|ref|ZP_04678998.1| DNA ligase, NAD-dependent [Staphylococcus warneri L37603]
 gi|239596322|gb|EEQ78860.1| DNA ligase, NAD-dependent [Staphylococcus warneri L37603]
          Length = 668

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 252/703 (35%), Positives = 394/703 (56%), Gaps = 62/703 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L  L  + SY    YY    P + DSEYD L      I    P+    + P+ P  ++G
Sbjct: 10  DLHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIHIESEHPEF---KTPDSPTVRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N EDLRKF  RI     +++  ++ +  E KIDG  +
Sbjct: 64  GEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RENIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+ +  F+
Sbjct: 119 SLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYMPRKSFM 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A  Q   L
Sbjct: 177 NLNEEKEKNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSIFLYSINDFTDFEATTQSGAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N+   + +   G++ Y  +  + R  LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDELGFKTNHERERVSDIDGVLKYIEKWTAEREMLPYDIDGIVIKVNDLEQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+ CP C 
Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVRSIIDRRPEDAETYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++++
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQQLYEND 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L+        ++      G   V NL ++I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLEEEDLLPLERM------GSKKVENLLEAIKQAKSQSLEHLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + +R LA+ Y       + ++ ++    ++   LI +  +G  +AQ++V + +N
Sbjct: 509 IRHLGVKASRVLAEKY-------ETMDRLLTVTEEE---LIAIHDIGGKLAQSVVTYLEN 558

Query: 619 PRNICAVEALLKEVSPSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRHKAQEYVT 671
             +I A+   LK+    +    K V ++EIE       K +V TG L+++ R++A +++ 
Sbjct: 559 D-DIRALIQKLKD--KDVNMTYKGVKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASQWLQ 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             GA V+  +++ TDI+I G + GSKL KA++ G +I  EE+F
Sbjct: 616 MQGAKVTNSVNKSTDILIAGADAGSKLTKAEKFGTEIWTEEEF 658


>gi|298528094|ref|ZP_07015498.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511746|gb|EFI35648.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 679

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 262/713 (36%), Positives = 385/713 (53%), Gaps = 61/713 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +EI+ H+  YY    P+I D EYD +      +    P L  S     P  K+G    
Sbjct: 15  LRREINLHNYYYYVLDDPLISDVEYDRMLAELKDLEEKHPGLKHS---GSPTMKVGAPPA 71

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                  HS+P  SL+  +++E++R+F+ RI +   +  D   +F  EPK+DG  + I Y
Sbjct: 72  GQFEHREHSLPMYSLDNSFSLEEVREFVQRIKK---QIPDADPYFWAEPKLDGLAVEIIY 128

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEVYISKNDFLAL 201
           E G FV A+ RGDG+ GEDV+  IR I  +P  L      PE +EVRGEV I + +F  L
Sbjct: 129 ENGLFVAASTRGDGYVGEDVTDNIRTIRNLPLTLFYTEFFPEYLEVRGEVVIPRQEFTRL 188

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT---SEIFAKGQYEM 257
           N++    G K +ANPRNAA+G +R+L+     +R + FF +G G +   S    + Q E+
Sbjct: 189 NEDKARKGEKVFANPRNAAAGSVRQLDSRITASRPVYFFSYGTGISRFKSGAGWQSQEEI 248

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            + +  LG PV  G R       +   Y E    R    ++IDGLV KV++  LQ++LG 
Sbjct: 249 ARGLNALGLPVVPGGRICRDPAEVEECYREQLDRREQSDFEIDGLVIKVNDIGLQQRLGF 308

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW ++ KF   Q  T+L DI +Q+GRTG+LTPVA LEP+N+GG +++ A+LHNE+
Sbjct: 309 TSRAPRWAMAVKFPALQGRTKLKDIQVQVGRTGVLTPVAILEPLNLGGVVVSRASLHNEN 368

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +D++VGD VLV+RAG+VIP+VV     ER    + F FP  CP C
Sbjct: 369 EIR-----------AKDLKVGDTVLVQRAGDVIPEVVRPETRERDGTQKEFVFPEKCPAC 417

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS V R  +       AA RC   ++C A+  ++L +F  +   +IEGLG+Q +    K 
Sbjct: 418 QSPVARIDDE------AAIRCL-NMSCPARLEQQLIYFAGKQGLDIEGLGRQWIKVLVKK 470

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN-KRRNISLERFIFS 556
                 +  PADIF L         K+      G     N+ DSI    +  +L R I +
Sbjct: 471 G----LLCSPADIFRLSLDDLLPLDKM------GRKLAQNMLDSIRLAAQKATLPRLIAA 520

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG E A+ LA  Y      A    N          SL  +  +G  +A +I  F+
Sbjct: 521 LGIRHVGVETAKRLAANYKDLDELAAAEKN----------SLQMIEDIGPEVASSIAGFF 570

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQRHKAQEYVT 671
            NP+N      LL+E    IG   ++ ++  E+     KKLVFTG +  + R +A+E V 
Sbjct: 571 ANPQN----RKLLEEFK-EIGLWPEHAAAAGEDLPLKGKKLVFTGGMHNLSRDRAREIVE 625

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +LG  VS  +S  TD++I GDNPGSKL KA++LG+ I++E++FL L++ ++ +
Sbjct: 626 KLGGKVSGSVSGNTDMVIAGDNPGSKLSKARELGLDILSEQEFLDLIENWSAS 678


>gi|49484145|ref|YP_041369.1| DNA ligase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257426036|ref|ZP_05602458.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428709|ref|ZP_05605104.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431319|ref|ZP_05607695.1| DNA ligase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257434037|ref|ZP_05610388.1| DNA ligase [Staphylococcus aureus subsp. aureus E1410]
 gi|282904535|ref|ZP_06312420.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906308|ref|ZP_06314160.1| DNA ligase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909224|ref|ZP_06317040.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911529|ref|ZP_06319329.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282925143|ref|ZP_06332803.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C101]
 gi|283958665|ref|ZP_06376111.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293507779|ref|ZP_06667621.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510281|ref|ZP_06668987.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M809]
 gi|293539336|ref|ZP_06672015.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428486|ref|ZP_06821113.1| DNA ligase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590042|ref|ZP_06948682.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           MN8]
 gi|81650789|sp|Q6GFF3|DNLJ_STAAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49242274|emb|CAG40981.1| DNA ligase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271179|gb|EEV03336.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274353|gb|EEV05865.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277968|gb|EEV08624.1| DNA ligase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257280963|gb|EEV11107.1| DNA ligase [Staphylococcus aureus subsp. aureus E1410]
 gi|282313101|gb|EFB43499.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C101]
 gi|282324538|gb|EFB54850.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326792|gb|EFB57089.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330505|gb|EFB60022.1| DNA ligase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595091|gb|EFC00058.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C160]
 gi|283789705|gb|EFC28527.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919871|gb|EFD96940.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291094842|gb|EFE25110.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466645|gb|EFF09165.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M809]
 gi|295127468|gb|EFG57107.1| DNA ligase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577170|gb|EFH95884.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312437629|gb|ADQ76700.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315193434|gb|EFU23831.1| DNA ligase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 667

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/702 (35%), Positives = 385/702 (54%), Gaps = 58/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + +   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C 
Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558

Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +I A+   LK+     +   I   +     E   K +V TG L ++ R++A +++   
Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+
Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659


>gi|259047691|ref|ZP_05738092.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
 gi|259035882|gb|EEW37137.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
          Length = 668

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/720 (33%), Positives = 392/720 (54%), Gaps = 84/720 (11%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ +++L+    E       YY   KP   D+EYD       A+    P+   ++ P  
Sbjct: 11  IEQLKEQLNRWSHE-------YYVEDKPTATDAEYDKAYHELLALEKEHPEFVTADSPT- 62

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GGE+     KVTH+ P LSL   ++ EDL +F  R+    +K  + +I +  E K
Sbjct: 63  --QRVGGEVLEQFQKVTHTNPMLSLSNAFSKEDLEEFDARL----RKLTNRAIEYVCELK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I + Y+ G+    A RGDG +GEDV+  +R I ++P  LSL  P  IEVRGE Y+
Sbjct: 117 IDGLSIALTYQNGQLQLGATRGDGTTGEDVTGNVRTIKSVP--LSLKEPWNIEVRGECYM 174

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K  F+ALN      G + +ANPRNAA+G LR+L+P     R L+ F++      E+   
Sbjct: 175 PKKSFVALNKSREEEGLEVFANPRNAAAGSLRQLDPKIAAKRNLSVFLYSSPSVEELNVS 234

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L+KM  +GF  N    +  T   + +Y   + + R  LPY+IDG+V KV++F+ Q
Sbjct: 235 TQEELLRKMAEIGFVTNPERLKCQTIDEVWNYIETIGAKRQELPYEIDGMVIKVNDFATQ 294

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   ++PRW I++KF  ++A T + D++  +GRTG++TP A ++PV + G  +  A+
Sbjct: 295 EEIGYTVKAPRWAIAYKFPAEEAQTVVRDVEWTVGRTGVVTPTAVMDPVQLAGTTVRRAS 354

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +K            RDIR+ D V++ +AG++IP+V  +I+ +R   +QP+ FP+
Sbjct: 355 LHNIDLMK-----------ERDIRLEDTVVIHKAGDIIPEVTRVILEKRPATSQPYEFPT 403

Query: 433 FCPICQSRV--------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            CP+C  ++        +R LNPK               C AQ  E + HFVSR+A N+ 
Sbjct: 404 TCPVCHEKLEHLEDEVAIRCLNPK---------------CPAQLTEGMSHFVSRNAMNMS 448

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G   +  FF+ E     +   AD++ L   Q     KI+        S  N+ ++I  
Sbjct: 449 GIGPSIIKQFFE-EGLVLDV---ADLYKLTLDQLLELDKIQQ------KSAENILEAIEN 498

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  SLER +  LGIRHVG + A+ LA+++           N+ A        L+ +  +
Sbjct: 499 SKANSLERLLTGLGIRHVGTKAAKELAQHF----------ENMKALQEASIEQLLEIDGL 548

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFT 655
           GDIIA ++  +++ P    +V+ L++E+         +G+ + +  +    +  K +V T
Sbjct: 549 GDIIAYSVKTYFEQP----SVQELIQELQDRGVNMSYLGKTKADSEASGHILSGKTVVLT 604

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL+++ R  A+E +  LGA V+  +S+KTD++I G + GSKL+KA  LG+++ +E+QFL
Sbjct: 605 GTLEQLTRQDAKEKLESLGAKVTGSVSKKTDVVIAGYSAGSKLDKANSLGIEVWSEQQFL 664


>gi|16800936|ref|NP_471204.1| NAD-dependent DNA ligase LigA [Listeria innocua Clip11262]
 gi|81526387|sp|Q92AQ0|DNLJ_LISIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|16414371|emb|CAC97100.1| lin1870 [Listeria innocua Clip11262]
          Length = 671

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 257/711 (36%), Positives = 382/711 (53%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N +DL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFKKVEHDTPMLSLANAFNRDDLADFDRRI----RDKVGDDISYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  + L     IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIP--MKLKKAYSIEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+  +    
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  +    + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSNLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGSEKPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 ----MHLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKIADKETLTSIND----------IGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL+E+  +       G   +N+S E      K +V TG L+K+ R+ A+
Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEKLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|222529603|ref|YP_002573485.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725]
 gi|254781543|sp|B9MK54|DNLJ_ANATD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222456450|gb|ACM60712.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725]
          Length = 673

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/703 (35%), Positives = 391/703 (55%), Gaps = 49/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           RK +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  +
Sbjct: 6   RKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     +V H +P LSL  ++N  +L  F  R+       + +   + +E KIDG 
Sbjct: 63  VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELIGTSNFD---YVVEYKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G F+  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K++
Sbjct: 120 SVALEYENGLFIRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKDE 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  + +  E   +   +
Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNI-QWCEKELETHAQ 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   G
Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCT G+ C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+         + N+  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 KG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S       I+++     +  L L   P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEEQLLCL---PDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E  LK    +    +K  S  ++    V TG L K  R++A+E +  LGA 
Sbjct: 559 RQEQTRHLIER-LKAAGVNTVSEKKAKSDILKGYTFVLTGALSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660


>gi|329576880|gb|EGG58365.1| DNA ligase [Enterococcus faecalis TX1467]
          Length = 676

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/713 (34%), Positives = 396/713 (55%), Gaps = 55/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 62  -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  I  TG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIDCTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +   D    ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662
           A ++V +++N   +  + A L++   ++     R E+   V S  ++K +V TG L +  
Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +
Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMV 668


>gi|218289368|ref|ZP_03493602.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
 gi|218240474|gb|EED07655.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
          Length = 684

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/723 (34%), Positives = 389/723 (53%), Gaps = 64/723 (8%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ALS+E+AR     L ++I YH+  YY    P I D+E+DAL R    +   +P+L    D
Sbjct: 9   ALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELV---D 65

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P  P  ++G        KV H +P LSL   ++ EDL  +  R+    ++   + + +  
Sbjct: 66  PASPTQRVGAPALEGFAKVVHEVPMLSLSNAYSTEDLLDWDRRV----RQAVGDDVRYVC 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + +RY+ G+ V  A RGDG  GED++A IR I  +P  L L+ P  +EVRGE
Sbjct: 122 ELKVDGLAVALRYQDGRLVLGATRGDGSVGEDITANIRTIRNVP--LELSEPVSLEVRGE 179

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K +F+ LN+     G   +ANPRNAA+G LR+L+P    +R L   V+ L +    
Sbjct: 180 AYMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEAH 239

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +   + L  +  LG P +           +++Y       R  LPY  DG+V KVD  
Sbjct: 240 GCETHSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVDSL 299

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG  A+SPRW I++K+A +QA T L  I++ +GRTG++TP A  +PV + G  ++
Sbjct: 300 ALQSRLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTTVS 359

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED ++            +DIRVGD ++V++AG++IP+V+  +   R      F 
Sbjct: 360 RASLHNEDLVR-----------EKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEFR 408

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C SR+VR L+ +      A RC     C A   E L HF SRDA NIEGLG+Q
Sbjct: 409 MPETCPQCGSRLVR-LDGEV-----AWRCINP-DCPALLREGLIHFCSRDAMNIEGLGEQ 461

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +       D    +R  AD++ L++       ++      GD     L  +I + +  S
Sbjct: 462 WITVLL---DRGL-VRTHADLYRLRKSDLIQLDRM------GDKLADKLLHNIQESKRNS 511

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVG + A++LA+++ +       I+ +++ + ++   L+ VP +G  +A
Sbjct: 512 LERLLFGLGIRHVGEKAAKTLAEHFGT-------IDALMSASEEE---LMAVPDIGPKVA 561

Query: 610 QAIVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           Q+I +++  PR    V  L++E     V+ +    +K     +  K +V TG LQ   R 
Sbjct: 562 QSIRQYFDTPR----VRQLIQELKDLGVNMTYLGPQKVSDGPLAGKTVVLTGVLQAADRK 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFL 717
           +A E++ ++G  V++ +S KTD++I GD  GSKL KAQ++        ++I +E  FL L
Sbjct: 618 QATEWIERMGGKVASSVSAKTDVLIAGDKAGSKLAKAQEILRNHPDAKLEIWDEAAFLRL 677

Query: 718 LQQ 720
           + +
Sbjct: 678 VDE 680


>gi|194016164|ref|ZP_03054779.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061]
 gi|194012519|gb|EDW22086.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061]
          Length = 668

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/714 (34%), Positives = 405/714 (56%), Gaps = 57/714 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A++ +  L Q ++ ++  Y+   +P + D+EYDA  R   ++    PDL  ++ P+  
Sbjct: 4   EAAKRRIEELHQILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAADSPS-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +  +  KV H  P LSL   +N +DL  F  R+    ++   + I + +E KI
Sbjct: 62  -QRVGGAVLDAFQKVRHGTPMLSLGNAFNEQDLLDFDRRV----RQAVGDDIAYNVELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I +IP  L +  P  IEVRGE ++ 
Sbjct: 117 DGLAVSLRYENGLFVRGATRGDGTTGEDITENLKTIRSIP--LKIKRPLSIEVRGEAFMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252
           K  F ALN++ +    +P+ANPRNAA+G LR+L+ T I   R L+ FV+ + +  EI  +
Sbjct: 175 KPSFEALNEKRLQNEEEPFANPRNAAAGSLRQLD-TKIAAKRNLDIFVYSIAELDEIGVE 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L  +  LGF  N   R   T   ++     +K+ R+   Y+IDG+V KVD  + Q
Sbjct: 234 SQSEGLDLLDELGFKTNKERRMCQTIEEVIELIETLKTKRADFSYEIDGIVIKVDSLAQQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  A+SPRW +++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  +  A+
Sbjct: 294 EELGFTAKSPRWAVAYKFPAEEVVTKLLDIELSVGRTGVITPTAILEPVKVAGTTVQRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED IK            +DIR+ D+V+VK+AG++IP+VV +++++R  + +PF  P+
Sbjct: 354 LHNEDLIK-----------EKDIRLFDQVIVKKAGDIIPEVVGVLIDQRTGEEKPFHMPT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ + 
Sbjct: 403 ECPECHSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVIT 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F+ +      R+ +D++ L + +     ++      G+ SV NL  SI + +  SLER
Sbjct: 456 QLFQEQ---LVSRV-SDLYRLTKEELIQLERM------GEKSVDNLLRSIEQSKENSLER 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIR +G++ A++LA ++       Q   +           L+ V  +G+ +A A+
Sbjct: 506 LLFGLGIRFIGSKAAKTLAMHFGDIDQLKQATKD----------QLLEVDEIGEKMADAV 555

Query: 613 VEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           V +++    +  +  L      +    P   + E++  S    K +V TG L+++ R+ A
Sbjct: 556 VTYFEKEEILNLLNELKELGVNMTYTGPKPVKVEES-DSYFAGKTIVLTGKLEEMARNDA 614

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +  LG  ++  +S+KTD++I G+  GSKL KA++L ++I +E + L  L++
Sbjct: 615 KTAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDEAKMLEELKK 668


>gi|82751560|ref|YP_417301.1| DNA ligase [Staphylococcus aureus RF122]
 gi|123754599|sp|Q2YU70|DNLJ_STAAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|82657091|emb|CAI81528.1| DNA ligase [Staphylococcus aureus RF122]
          Length = 667

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/702 (35%), Positives = 384/702 (54%), Gaps = 58/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I   R   A  +  P+ CP C 
Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEGAVTYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558

Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +I A+   LK+     +   I   +     E   K +V TG L ++ R++A +++   
Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+
Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659


>gi|27262356|gb|AAN87459.1| NAD-dependent DNA ligase [Heliobacillus mobilis]
          Length = 677

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/711 (33%), Positives = 391/711 (54%), Gaps = 54/711 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A   +  L + I +H+  YY    P I D++YDAL R   AI   +P+L  ++ P    
Sbjct: 16  EAEVRVKELREIIRHHEYRYYVLDAPEITDADYDALMRELQAIEDTYPELVEADSPT--- 72

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG+   +   V H +P LSL   ++  DLR+F  R     +++    + + +EPKID
Sbjct: 73  RRVGGQPLAAFNSVRHRVPLLSLANAFDEHDLREFDRRA----RERAGRDLTYVVEPKID 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE+G+FV  A RGDG +GED++  ++ I TIP  L  ++P +++VRGE Y+ K
Sbjct: 129 GLTVVLTYEQGRFVRGATRGDGETGEDITENLKTIRTIPLRLKTDLP-VLDVRGEAYLPK 187

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN+E    G   +ANPRNAA+G LR+L+P    +R L  F + +       A+ Q
Sbjct: 188 GAFATLNEEREERGEPVFANPRNAAAGSLRQLDPKVTASRPLRAFFYNILLLEGAEAQEQ 247

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            + L+ +   G PVN   +   +   +++Y       R  LP++IDG+V KV+E    ++
Sbjct: 248 RQALELIEQWGLPVNKERKFCLSIEEVIAYCRYWTEHRHDLPFEIDGMVVKVNELDEYER 307

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPR+ I+ KF  +QA T++  I +++GRTG++TP A LEPV + G  ++ ATLH
Sbjct: 308 LGVTSKSPRYAIAFKFPAEQAVTQVRSITVKVGRTGVITPTAELEPVRVAGTTVSRATLH 367

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I+            +DI VGD V++++AG++IP+VV ++   R  + QPFS P  C
Sbjct: 368 NEDIIR-----------EKDIHVGDYVIIQKAGDIIPEVVSVLKERRTGEEQPFSMPQAC 416

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S   R      G++  A RCT    C AQ  E L H+ SRDA NIEGLG   ++  
Sbjct: 417 PECGSPASR----LEGEV--ALRCTSS-TCPAQAKEGLIHYASRDAMNIEGLGPAIVNLL 469

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           + +      +  PAD++ L      +  ++  +   G  S  NL  +I + ++  L  F 
Sbjct: 470 WDT----GLVHNPADLYDL------TVDQVAPLERMGKKSAANLIAAIEQSKSRGLAAFT 519

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LG+R VG   A++LA ++ S       +  ++A   ++   L  +P +G  +A ++  
Sbjct: 520 FALGLRLVGQTAAKTLASHFGS-------MEKLMAATQEE---LQAIPEIGPKMADSLKN 569

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKAQEYV 670
           ++  P N   VE +L+ V   +  + +  + +    +  K +V TGTLQ + R +AQ  +
Sbjct: 570 YFSIPAN---VEMILRLVEKGVQMNAQQSTVDSPQTLAGKMIVLTGTLQSMDRREAQRLL 626

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
              GA +S+ +S+KT ++I G+  GSKLEKA +L V ++ EE FL L+  +
Sbjct: 627 EARGAKISSSVSKKTSMVIAGEEAGSKLEKALELKVPVLREEDFLKLIDHH 677


>gi|254556107|ref|YP_003062524.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1]
 gi|300766626|ref|ZP_07076543.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180104|ref|YP_003924232.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|254045034|gb|ACT61827.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1]
 gi|300495726|gb|EFK30877.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045595|gb|ADN98138.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 679

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/718 (33%), Positives = 390/718 (54%), Gaps = 71/718 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++EQA  E ++L Q ++     YY    P + DS YD    R   +   FP L     P
Sbjct: 8   MTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQLVT---P 64

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG +     KVTH IP LSL  +++  +L++F+ R+    ++   + + +  E
Sbjct: 65  DSPTQLVGGTVKAGFDKVTHEIPMLSLGDVFSQAELQEFVDRL----EQNVGHPVDYNCE 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G  V  + RG+G  GED++A I+ I +IP+ L+   P  I+VRGE 
Sbjct: 121 LKIDGLALSLRYEDGVLVQGSTRGNGTVGEDITANIKTIKSIPQRLTR--PLTIDVRGEC 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+   A G   +ANPRNAA+G LR+L+   +  R L+ F++ +     + 
Sbjct: 179 YMPKAAFAALNERREAAGEPVFANPRNAAAGTLRQLDSRVVAERQLSTFMYNIADYEPLT 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+ Q +ML +   LGF +N   + A++   + SY +  ++ R  L Y IDG+V K +   
Sbjct: 239 ARTQSDMLTEFADLGFAINPDFKVAHSMADVFSYIDHYQNERPELAYGIDGIVIKANPLP 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG   + PRW I+ KF   +  T L D++  +GRTG++TP A +EPV + G  +  
Sbjct: 299 LQRSLGATVKVPRWAIAFKFPPDEQPTLLKDVEWTVGRTGVVTPTAVMEPVQLAGTTVAR 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             +D+R+GD VL+ +AG++IP++  + + +R  DAQP   
Sbjct: 359 ASLHNPDYV-----------AAKDVRIGDTVLLHKAGDIIPEISSVDLAKRPKDAQPLVI 407

Query: 431 PSFCPICQSRVV--------RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P+ CP C + +V        R +NPK               C AQ  E L HF SR+A N
Sbjct: 408 PTTCPSCGAPLVHLEDEVALRCINPK---------------CPAQVQEGLVHFASRNAMN 452

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG + +   + +       R+ +D+  L R  +     ++ I    D S   L  +I
Sbjct: 453 IDGLGPRIIAQLYAN-------RLVSDVAGLYRLTKAQLLTLDKI---KDKSAEKLLTAI 502

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           ++ R+ SLER +F LGIRHVGA++AR +A+++ +       I  ++A + ++   +  + 
Sbjct: 503 DRSRDNSLERLLFGLGIRHVGAKVARLIAQHFGT-------IEALMAASQEE---IAAID 552

Query: 603 LVGDIIAQAIVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            +GD+IA A+V+++++       R + AV        PS    E + +S    K++V TG
Sbjct: 553 SMGDVIANAVVQYFESDEVHTLIRELQAVNVNTTYQGPSATVAEDS-NSWFAGKRVVLTG 611

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            L+   R  A +++   GA V+  +S+KTD++I G + GSKL+KAQQL + + +E +F
Sbjct: 612 KLESFTRPDATQWLQAHGATVTGSVSKKTDLVIAGSDAGSKLQKAQQLDITVWDEARF 669


>gi|71898271|ref|ZP_00680445.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
 gi|71732010|gb|EAO34067.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
          Length = 831

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/683 (36%), Positives = 369/683 (54%), Gaps = 97/683 (14%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP++     Q   EL    QE +YH   Y+   +P I D++YD + R  DA+   +PDL
Sbjct: 1   MIPLDP---AQRAAELRRRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEATYPDL 54

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI        + +
Sbjct: 55  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRIT---AHLGETA 108

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP R+ S   P +
Sbjct: 109 PGFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 168

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+P     R L+F+ +G+
Sbjct: 169 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 228

Query: 244 GK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ T ++      E+L  +R  GFPV+  V       G+++YY  M++IR TLP+DIDG+
Sbjct: 229 GEVTDDVSFHRHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 288

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q ++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 289 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 348

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 349 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 397

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P    +S P  CP+C S +VR+    TG   A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 398 PGVTAWSMPMACPVCGSEIVRE----TG--AAVWRCSGELACPAQRKEAIRHFVSRRAMD 451

Query: 483 IEGLGKQQLDFFF--------------------------KSEDPAFSIRIPADIFTLQRR 516
           +EGLG + ++                              ++ P   +R   D  T  R 
Sbjct: 452 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 511

Query: 517 QQTSTTKIE---NILGFGDVS--------------------------VTNLYDSINKRRN 547
           QQ     +    ++ G GDV                             NL  +I+  R 
Sbjct: 512 QQLEEILLTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDHSRQ 571

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LERF+F+LG+ HVG   A++LA    S+ + A     II      W     VP +G  
Sbjct: 572 TTLERFLFALGMTHVGETTAKALAH---SFGDLA-----II--RQLPWPLFKCVPDIGGE 621

Query: 608 IAQAIVEFYQNPRNICAVEALLK 630
           +A+AI  F   P N  A++ L++
Sbjct: 622 VARAIGHFMDQPANQQAIDDLVE 644



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 11/121 (9%)

Query: 609 AQAIVEFYQNPRNIC-------AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           AQ++ E++Q+P NI          + LL ++ PS  R     ++ +  + +V TG L  +
Sbjct: 713 AQSLTEWFQSPDNISLARRLQHCCDVLLAQL-PSPDRAH---TAPLNGQSVVLTGKLASL 768

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A   +  LGA +   +S+KT  ++ G++PGSKL+KA  L V I +E + L  L+QY
Sbjct: 769 TREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHALHVDIWDEARLLAFLEQY 828

Query: 722 N 722
           +
Sbjct: 829 S 829


>gi|257436941|ref|ZP_05612983.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M876]
 gi|282914702|ref|ZP_06322487.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M899]
 gi|257283730|gb|EEV13855.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M876]
 gi|282321416|gb|EFB51742.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M899]
          Length = 667

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/702 (35%), Positives = 384/702 (54%), Gaps = 58/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +D RKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFNKVNHDTPMLSLGNAFNEDDFRKFDQRI-----REQIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + +   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C 
Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L         ++      G   V NL  +I + ++ SLE  +F LG
Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + +N
Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558

Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +I A+   LK+     +   I   +     E   K +V TG L ++ R++A +++   
Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+
Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659


>gi|116490507|ref|YP_810051.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1]
 gi|122277306|sp|Q04GN6|DNLJ_OENOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116091232|gb|ABJ56386.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1]
          Length = 684

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 255/728 (35%), Positives = 402/728 (55%), Gaps = 69/728 (9%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q  PIE L+  QA+ E+  L  E++     YY+   P + D  YDA   R  A+  A+P 
Sbjct: 6   QFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALEKAYPS 65

Query: 65  LARSEDPNGPLNKIGGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKF--ITRIYRFWQK 120
           LA  + P   +       N S  L KV H +P LSL  +++I++L  +  +T      Q+
Sbjct: 66  LAMPDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWDLVTTKNAGSQQ 125

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K      + LE KIDG  I++RYE G+ + A+ RGDG  GE+V+  ++ I  IP+VL  N
Sbjct: 126 K------YNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVL--N 177

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  IEVRGE+Y+ K  F  LN +    G+  +ANPRNAA+G LR+L+P     R+L+ F
Sbjct: 178 EPLTIEVRGEIYMRKEAFADLNQQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRHLSSF 237

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++   +   +    Q ++L++ R LGFPVN+  +  +    +  Y +E    R  LPY I
Sbjct: 238 IYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPYGI 297

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++  ++ +LG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++
Sbjct: 298 DGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAIMD 357

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  +  A+LHN DY++            +D+R+GD V + +AG++IP+V  +I+ 
Sbjct: 358 PVFLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVILK 406

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DAQ +  P +CP C+S++V       G++  A RC     C AQ  E L HF SR+
Sbjct: 407 KRPADAQAYPIPVYCPSCKSKLVH----VQGEV--ALRCINP-ECPAQIKEGLIHFASRN 459

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++           IR  +D++ L   Q T+  K      F D+S  NL 
Sbjct: 460 AMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTTLDK------FADLSSKNLI 509

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDW 595
            +I++ R  S+ER I +LGIR VGA+ A+ LA ++ + +N     A+EI  I        
Sbjct: 510 QAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIAEIDG------ 563

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------N 649
                   VG ++A AI +++    N  +V +L+ E+       +   +S ++      N
Sbjct: 564 --------VGQVMADAIRQYF----NSESVASLINELENFQVNFDYLTTSTVDEKNYFFN 611

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K++V TG L    R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++
Sbjct: 612 KRIVLTGKLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVI 671

Query: 710 NEEQFLFL 717
           NE+ F+ L
Sbjct: 672 NEQDFINL 679


>gi|328950509|ref|YP_004367844.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
 gi|328450833|gb|AEB11734.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
          Length = 676

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/712 (34%), Positives = 388/712 (54%), Gaps = 51/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+A+K +  L Q I YH+  YY    P I D+EYDAL R   A+   +PDL     P
Sbjct: 1   MTREEAKKRVLELRQAIRYHNYRYYVLDDPEISDAEYDALMRELKALEARYPDLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P   +G  M  S F+ + H  P  SL+  +N+E++R+F  R+ R   +       +T+
Sbjct: 58  DSPTQVVGAGMIESSFREIQHPTPLYSLDNAFNLEEVREFEARLERALGRP--GPFEYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  + + YE+G  V+ A RG+G +GE+V+  +  IP +PR L    P  +EVRGE
Sbjct: 116 EYKIDGLSVNLYYEEGFLVWGATRGNGRTGEEVTQNLLTIPDVPRRLE-GAPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG-KTSE 248
           VY+ ++ FL LN      G  P+ NPRNAA+G LR+ +P    TR L  + +G+G    E
Sbjct: 175 VYMPRDTFLKLNQAREEAGLPPFKNPRNAAAGSLRQQDPRVTATRGLRAYFYGIGLGLQE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q E+L  ++  GFPV    R      GI + Y    + R T+P++ DG+V K++ 
Sbjct: 235 TGVETQAELLDYLKRAGFPVEPHARVVRGVEGIETAYQAFLAQRHTVPFEADGVVVKLNN 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q +LG  A+SPRW +++KF  ++  TR+L++  Q+GRTG +TPVA LEPV + G  +
Sbjct: 295 LAWQDELGYTAKSPRWAVAYKFPAEEKKTRVLEVIFQVGRTGRVTPVAVLEPVLLDGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  +LHNE Y++ L            + +GD VLV +AG +IP+V+ ++  ER    +P 
Sbjct: 355 SRVSLHNEAYLEEL-----------GLMLGDWVLVHKAGGIIPEVLRVLKEERTGTERPL 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C   +V +     GK+   HRC   L C AQ  ER++H+ SR A +I+GLG+
Sbjct: 404 VFPDACPACGHALVLE-----GKI---HRCPNPL-CPAQAFERIRHYASRRAMDIQGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       IR PAD++ L +    S  +      FG+ S  NL   I   +  
Sbjct: 455 RHIEQMLEK----GLIRTPADLYRLTKADLVSLER------FGEKSAENLLAQIEASKTR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +F+LGI  VG  +AR+LA+ + +       ++ ++    ++   L+ V  VG++ 
Sbjct: 505 GLERLLFALGIPQVGEALARTLARRFGT-------LDRLLEATPEE---LLEVEDVGELT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ I E   +P  +  +E  L+    S    E+  S  +     V TG L +  R + + 
Sbjct: 555 ARRIHETLHDPAMLELIEQ-LRAAGVSFEAKERPRSDALAGLTFVLTGELSR-PRAEVKR 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LGA V++ +S+KT  ++ G   GSKL+KA++LG+ +++E     L+QQ
Sbjct: 613 RLEALGAKVASAVSKKTSYVVAGAGAGSKLQKARELGIPVLDEAGLEALIQQ 664


>gi|118587526|ref|ZP_01544950.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163]
 gi|118431977|gb|EAV38719.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163]
          Length = 684

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 255/728 (35%), Positives = 402/728 (55%), Gaps = 69/728 (9%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q  PIE L+  QA+ E+  L  E++     YY+   P + D  YDA   R  A+  A+P 
Sbjct: 6   QFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALERAYPS 65

Query: 65  LARSEDPNGPLNKIGGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKF--ITRIYRFWQK 120
           LA  + P   +       N S  L KV H +P LSL  +++I++L  +  +T      Q+
Sbjct: 66  LAMPDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWDLVTTKNAGSQQ 125

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K      + LE KIDG  I++RYE G+ + A+ RGDG  GE+V+  ++ I  IP+VL  N
Sbjct: 126 K------YNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVL--N 177

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  IEVRGE+Y+ K  F  LN +    G+  +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 178 EPLTIEVRGEIYMRKESFADLNRQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRRLSSF 237

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++   +   +    Q ++L++ R LGFPVN+  +  +    +  Y +E    R  LPY I
Sbjct: 238 IYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPYGI 297

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++  ++ +LG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++
Sbjct: 298 DGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAIMD 357

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV++ G  +  A+LHN DY++            +D+R+GD V + +AG++IP+V  +I+ 
Sbjct: 358 PVSLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVILK 406

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DAQ +  P +CP C+S++V       G++  A RC     C AQ  E L HF SR+
Sbjct: 407 KRPADAQAYPIPVYCPSCKSKLVH----VQGEV--ALRCINP-ECPAQIKEGLIHFASRN 459

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++           IR  +D++ L   Q T+  K      F D+S  NL 
Sbjct: 460 AMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTTLDK------FADLSSKNLI 509

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDW 595
            +I++ R  S+ER I +LGIR VGA+ A+ LA ++ + +N     A+EI  I        
Sbjct: 510 QAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIAEIDG------ 563

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------N 649
                   VG ++A AI +++    N  +V +L+ E+       +   +S ++      N
Sbjct: 564 --------VGQVMADAIRQYF----NSESVASLINELENFQVNFDYLTTSTVDEKNYFFN 611

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K++V TG L    R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++
Sbjct: 612 KRIVLTGKLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVI 671

Query: 710 NEEQFLFL 717
           NE+ F+ L
Sbjct: 672 NEQDFINL 679


>gi|282917251|ref|ZP_06325006.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           D139]
 gi|283771054|ref|ZP_06343945.1| DNA ligase [Staphylococcus aureus subsp. aureus H19]
 gi|282318878|gb|EFB49233.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           D139]
 gi|283459648|gb|EFC06739.1| DNA ligase [Staphylococcus aureus subsp. aureus H19]
          Length = 667

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 251/704 (35%), Positives = 386/704 (54%), Gaps = 62/704 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELINIEEEHPEYKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEVYISKND 197
           +++Y  G FV    RGDG +GED++  ++ I  IP  +  SLN+    EVRGE Y+ +  
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKESLNV----EVRGEAYMPRRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E
Sbjct: 175 FLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSE 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G
Sbjct: 235 ALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 FTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP 
Sbjct: 355 DLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPS 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++
Sbjct: 404 CGHELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQ 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +E     I+  ADIF L         ++      G   V NL  +I + ++ SLE  +F 
Sbjct: 457 NE----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + ++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + 
Sbjct: 507 LGIRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYL 556

Query: 617 QNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +N  +I A+   LK+     +   I   +     E   K +V TG L ++ R++A +++ 
Sbjct: 557 EN-EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLA 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
             GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+
Sbjct: 616 SQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659


>gi|16125769|ref|NP_420333.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15]
 gi|221234527|ref|YP_002516963.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000]
 gi|81535469|sp|Q9A842|DNLJ_CAUCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781280|sp|B8H5Y7|DNLJ_CAUCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13422903|gb|AAK23501.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15]
 gi|220963699|gb|ACL95055.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000]
          Length = 783

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/579 (40%), Positives = 334/579 (57%), Gaps = 25/579 (4%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP+  L+  QA ++L  L   ++ HD  Y+Q   P + D+EYDALKRR   I   FP L 
Sbjct: 4   IPVADLTEAQAVEDLERLADLLATHDIAYHQEDNPTVSDAEYDALKRRNLDIETRFPHLV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    N P  ++G         V H +P LSL+  ++ ++  +F  R+ RF +     ++
Sbjct: 64  RD---NSPSMRVGATRAEQFAPVEHGVPMLSLDNAFSNDEAIEFDARVRRFLRISPSETV 120

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            +T EPKIDG   ++RYEKG  V  A RGDG  GEDV+A +R I  IP R+     P++I
Sbjct: 121 AYTAEPKIDGLSASLRYEKGVLVQGATRGDGRVGEDVTANLRTIADIPHRLKGSGWPDVI 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY+    F A N      G++ YANPRN A+G LR+++P     R L FF +  G
Sbjct: 181 EVRGEVYVELAAFAAFNKAAEEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFFGYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             SE FA  Q+  L+++   GF       Q      G++  Y + + +R TL +DIDG+V
Sbjct: 241 LVSEGFADSQWGALERLAEWGFVTTAPPAQRVLNAQGLLDIYAQFEVLRPTLGFDIDGVV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+  LQ++LG  +RSPRW I+ KF  ++A T L  ID+Q+GRTG +TPVARL+PV +
Sbjct: 301 YKVDDLELQRRLGFVSRSPRWAIARKFPAQRARTVLEAIDLQVGRTGAITPVARLKPVTV 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERH 422
           GG  +TNATLHN D I  L           D+RVGD V+++RAG+VIP++V++ +     
Sbjct: 361 GGVSVTNATLHNGDEIARL-----------DVRVGDTVVIQRAGDVIPQIVEVALDARPD 409

Query: 423 PDAQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
           P   P+ FP  CP   Q+ + R++   +G+     RCTG  AC  Q++E L+HFVSR AF
Sbjct: 410 PAPPPYEFPHVCPCPLQTPLAREVT-ASGQESVVRRCTGEFACPFQRVEHLRHFVSRRAF 468

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG++QL  FF+       I  PADIF L R  +      E   G+G+ SV NL   
Sbjct: 469 DIEGLGEKQLQAFFEEG----WITEPADIFKLARDAEKLAVLRER-EGYGETSVANLVKG 523

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
           I  RR I ++R I+ LG R +G   +  LA+ +  +++ 
Sbjct: 524 IEARRTIGMDRMIYGLGARDIGETTSTVLARNFDRFEDL 562



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 2/151 (1%)

Query: 569 SLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           +LA+ Y ++  FA   +        DD+L L  +  VG + AQ++  F+    N   V  
Sbjct: 632 ALAQRYGTWDAFADGLVAAASGAPGDDYLHLAAIDGVGPVAAQSLARFFAEDHNRQKVAN 691

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L+ E+        K   + +  K +VFTG+L+K+ R +A+     LGA V++ +S+KTD+
Sbjct: 692 LVAELDIQPVAKPKT-DTAVAGKTIVFTGSLEKMTRDEAKAQAEGLGAKVASSVSKKTDL 750

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++ G   GSKL+ A  LG+++M E+++L L+
Sbjct: 751 VVAGPGAGSKLKTATDLGIQVMTEDEWLELV 781


>gi|290889907|ref|ZP_06552994.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429]
 gi|290480517|gb|EFD89154.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429]
          Length = 684

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 255/728 (35%), Positives = 402/728 (55%), Gaps = 69/728 (9%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q  PIE L+  QA+ E+  L  E++     YY+   P + D  YDA   R  A+  A+P 
Sbjct: 6   QFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALEKAYPS 65

Query: 65  LARSEDPNGPLNKIGGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKF--ITRIYRFWQK 120
           LA  + P   +       N S  L KV H +P LSL  +++I++L  +  +T      Q+
Sbjct: 66  LAMPDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWDLVTTKNAGSQQ 125

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K      + LE KIDG  I++RYE G+ + A+ RGDG  GE+V+  ++ I  IP+VL  N
Sbjct: 126 K------YNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVL--N 177

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  IEVRGE+Y+ K  F  LN +    G+  +ANPRNAA+G LR+L+P     R+L+ F
Sbjct: 178 EPLTIEVRGEIYMRKEAFADLNRQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRHLSSF 237

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++   +   +    Q ++L++ R LGFPVN+  +  +    +  Y +E    R  LPY I
Sbjct: 238 IYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPYGI 297

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++  ++ +LG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++
Sbjct: 298 DGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAIMD 357

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  +  A+LHN DY++            +D+R+GD V + +AG++IP+V  +I+ 
Sbjct: 358 PVFLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVILK 406

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DAQ +  P +CP C+S++V       G++  A RC     C AQ  E L HF SR+
Sbjct: 407 KRPADAQAYPIPVYCPSCKSKLVH----VQGEV--ALRCINP-ECPAQIKEGLIHFASRN 459

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++           IR  +D++ L   Q T+  K      F D+S  NL 
Sbjct: 460 AMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTTLDK------FADLSSKNLI 509

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDW 595
            +I++ R  S+ER I +LGIR VGA+ A+ LA ++ + +N     A+EI  I        
Sbjct: 510 QAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIAEIDG------ 563

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------N 649
                   VG ++A AI +++    N  +V +L+ E+       +   +S ++      N
Sbjct: 564 --------VGQVMADAIRQYF----NSESVASLINELENFQVNFDYLTTSTVDEKNYFFN 611

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K++V TG L    R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++
Sbjct: 612 KRIVLTGKLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVI 671

Query: 710 NEEQFLFL 717
           NE+ F+ L
Sbjct: 672 NEQDFINL 679


>gi|122879187|ref|YP_201049.6| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|166216280|sp|Q5H057|DNLJ_XANOR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 841

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 270/863 (31%), Positives = 429/863 (49%), Gaps = 184/863 (21%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE+AR+    L + I   D  YY  + P I D++YD L R    +   +P+L  ++ P+ 
Sbjct: 6   IERARE----LRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTADSPS- 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GG +  S  KV HSIP LSL   ++  +++ F+ RI+R  +    N + F++EPK
Sbjct: 61  --MRVGGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFR--RMGSSNPLEFSVEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++RYE GKFV    RGDG  GEDVS  IR I ++P ++   N+P I+EVRGEVY
Sbjct: 117 FDGLAISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGEVY 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG------- 244
           + ++ F   N   +A G K  ANPRN A+G LR+L+      R L+FF +G+G       
Sbjct: 177 MPRDGFSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVEQD 236

Query: 245 ---KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
              +  +  A     ML ++R  GFPV++ V       G+++YY  +   R  LP+DIDG
Sbjct: 237 LFEEIPQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYK+D+ + Q+++G  +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV
Sbjct: 297 VVYKLDDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           ++ G ++TNATLHN D I  LD           +RVGD V+V+RAG+VIP+V  ++ ++R
Sbjct: 357 HVAGVIVTNATLHNADQIARLD-----------VRVGDTVIVRRAGDVIPEVAAVVADQR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P  Q +  P+ CP+C S +VR+     G+  A  RC+G L C AQ+ E  +HFVSR A 
Sbjct: 406 PPATQSWQMPTQCPVCGSEIVRE----EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAM 459

Query: 482 NIE-------------GLGKQQLDFFFKSEDPAFSIRI-----PADIFTLQRRQQTST-- 521
           +++             G+ +   D +  + D    +R+         F  + R+  ++  
Sbjct: 460 DVDGLGEKFIEVLVDSGVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGA 519

Query: 522 -TKIE-NILGFG-DVS--------------------------------VTNLYDSINKRR 546
             ++E  ++G G D++                                  NL ++I   R
Sbjct: 520 YAQLEATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSR 579

Query: 547 NISLERFIFSLGI---------------------RH-----------VGAEIARSLAKYY 574
           + +LERF+F+LGI                     RH           +G E+ARSL  ++
Sbjct: 580 DTTLERFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFF 639

Query: 575 LSYQNFAQEINNIIAHNN------------------DDWLSLIRVPLVGDI--------- 607
               N  + I++++A                      + L  + +P V  I         
Sbjct: 640 DQPGN-QKAIDHLLARKVRIGDTHPPSPKLRGELRLANLLEDLEIPKVTPIRAAQIATAF 698

Query: 608 ----------------------IAQAIVEFYQNPRN-ICAVEA-----LLKEVSPSIGRH 639
                                 +A+++  +   P N   AV+A      L  + P  G  
Sbjct: 699 GSIDALRNGGPEPLVEAGVPQSVAESLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEE 758

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           +   +  ++ + +V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+
Sbjct: 759 K---TGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLD 815

Query: 700 KAQQLGVKIMNEEQFLFLLQQYN 722
           KAQ LGV+I +E + L  L ++ 
Sbjct: 816 KAQSLGVEIWDEARLLAFLGEHG 838


>gi|86605509|ref|YP_474272.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab]
 gi|123765626|sp|Q2JW63|DNLJ_SYNJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86554051|gb|ABC99009.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab]
          Length = 673

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 241/701 (34%), Positives = 385/701 (54%), Gaps = 54/701 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ  +EL +L Q+ S     YY +  PI+ DS YD L R    +  A+P+L     P+ 
Sbjct: 5   LEQRARELRALLQKASI---AYYVHDAPILEDSVYDRLYRELQELERAYPELI---TPDS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEP 132
           P  ++G +       V+H IP  SLE  +N+E+L+++  R++R   +  ++  + +  E 
Sbjct: 59  PTQRVGEKPAEQFPTVSHRIPLYSLENAFNLEELKEWQERLWRVLGRTPEEGELEYVCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           KIDG  + + Y  G     A RGDG SGED++  IRAIP+IP R+ +   P ++EVRGE 
Sbjct: 119 KIDGAALALTYVDGLLQRGATRGDGQSGEDITPNIRAIPSIPLRLATAAPPPVLEVRGEA 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL----GKT 246
           Y+   +F  +N E  + G  P+ANPRN A+G LR+L+   +  R L+FF + L    G  
Sbjct: 179 YLPIAEFERINRERCSAGDPPFANPRNCAAGTLRQLDSRVVAARKLSFFAYALHWPEGWP 238

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S    + Q+E LQ+++ LG PVN   +       +V +Y   +  ++ LPY  DG+V K+
Sbjct: 239 SGDPPQTQWECLQRLKDLGLPVNPLSQVCRGLEEVVQFYERWR--QAQLPYACDGVVVKL 296

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +   LQ++ G   + PRW I+ K+  ++  TR+  I   +GRTG +TPVA LEPV + G 
Sbjct: 297 NSLRLQEEAGFTQKFPRWAIALKYPAQEVPTRIRAIVASVGRTGAVTPVAELEPVLLAGT 356

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ A+LHN D ++ L           D+ +GD  +V++AGE+IP+VV I+   R PDA 
Sbjct: 357 TVSRASLHNADRLEEL-----------DVHIGDTAIVRKAGEIIPEVVGILKELRPPDAV 405

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+  PS CP C + +VR      G+ +   RC    AC A+   +L+H+ SRDA +IEGL
Sbjct: 406 PYRLPSHCPECGTLLVR----PAGEAIT--RCPNP-ACPAKIRGQLQHWASRDAMDIEGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++++    +       +R  AD++ L      +   +E++ G G  S   L  +I + R
Sbjct: 459 GEKRVAQLVEK----LGVRTVADLYRL------TPEHLESLEGMGSRSSQKLVQAIQRSR 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
               ER ++ LGI HVG   A+ LA+++ + +  AQ     IA              +G 
Sbjct: 509 QQPWERVLYGLGIPHVGVVTAQILAQHFPAPELLAQARAEDIAQIYG----------IGA 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHK 665
            IA+A+V ++ +P +   ++ L +   P++ R     VS  +  KK V TGTL  + R +
Sbjct: 559 EIAEAVVAWFADPAHQKLLQELRELGIPALPRQAAPAVSQVLAGKKFVITGTLPTLSRQQ 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           A+ ++   G  V+A +SR+TD ++VG +PGSKL++AQ LG+
Sbjct: 619 AKAWIESRGGKVTASVSRQTDYVVVGSDPGSKLKQAQALGI 659


>gi|302037359|ref|YP_003797681.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii]
 gi|300605423|emb|CBK41756.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii]
          Length = 675

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/711 (34%), Positives = 387/711 (54%), Gaps = 52/711 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L ++I +HD  YY   +P I D+EYD L R    +  A PDL   + P   
Sbjct: 9   QTAEQRIADLRRQIRHHDHLYYTKDRPEISDAEYDRLFRELVDLETAHPDLVTGDSPT-- 66

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G      L KV+H  P LSL+ I + +D+R F  R+ R   + + + I +T EPK 
Sbjct: 67  -QRVGAPPLDELTKVSHEKPMLSLDSITDQDDVRAFDARMKR---ELETDQIVYTAEPKF 122

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVY 192
           DG  + + Y++G FV  A RGDG  GEDV+  +R I  +P  L    ++P  + VRGEVY
Sbjct: 123 DGLSVELVYDRGAFVRGATRGDGMVGEDVTINLRTIRALPLQLDPQPSLPAHLVVRGEVY 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           +  ++F  LN  M   G + +ANPRNAA+G LR+L+     +R L    + +   S    
Sbjct: 183 MRLDEFQVLNRRMTERGEEAFANPRNAAAGSLRQLDSRITASRPLTLTCYDIMAISGTAP 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++ L  +   G PV    ++  +   ++S+     ++R +LP++IDG+V K+D  + 
Sbjct: 243 PTHWDELDALAAWGLPVPEHRQRCRSIDEVLSFQQATDAMRDSLPFEIDGVVVKLDRRTW 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q QLG ++RSPRW I++KFA ++  T + DI + +GRTG LTP+A L+PV +GG  I+ A
Sbjct: 303 QDQLGSKSRSPRWAIAYKFAPRKEITVIQDIAVSVGRTGTLTPLALLKPVEVGGVTISRA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D +             +D+RVGD V V+RAG+VIP + + +        +PF  P
Sbjct: 363 TLHNADEV-----------ARKDVRVGDTVKVERAGDVIPAIAERVPVPGETRQEPFVMP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S V R+         A   CTG   C AQ    ++HF S+ A +I+G+GK+ +
Sbjct: 412 DHCPVCGSAVARE--------GAYFYCTGQTVCVAQLKGAIEHFASKSALDIDGMGKKTI 463

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       +R  AD+++L + Q      I  + GF D S   L +SI + +++SL+
Sbjct: 464 AQLVD----VGLVRDLADLYSLTKDQ------ILTLEGFADRSANLLLESIERSKSVSLD 513

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  LGIR VG  IAR LAK + +       ++ +++   +D   L++V  +G  I+ +
Sbjct: 514 RLLMGLGIRQVGQHIARVLAKQFGT-------LSKLMSATQED---LLQVREIGPEISAS 563

Query: 612 IVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +  F+   RN   +  L++    ++P    +    S  +  K  VFTG L+   R +A+E
Sbjct: 564 LTSFFSEERNRAVIARLIERGLTIAPPTTENTTG-SQHLAGKTFVFTGGLEGYSRDQAKE 622

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V Q G  VS+ +S+K   ++ G +PGSKL++AQ+LGV+I+ E +F  L++
Sbjct: 623 LVEQQGGQVSSSVSKKASFVVAGTDPGSKLDQAQKLGVRILTEAEFTALVR 673


>gi|28377923|ref|NP_784815.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1]
 gi|81631729|sp|Q88XQ0|DNLJ_LACPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28270757|emb|CAD63662.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1]
          Length = 679

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/718 (33%), Positives = 389/718 (54%), Gaps = 71/718 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++EQA  E ++L Q ++     YY    P + DS YD    R   +   FP L     P
Sbjct: 8   MTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQLVT---P 64

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG +     KVTH IP LSL  +++  +L++F+ R+    ++   + + +  E
Sbjct: 65  DSPTQLVGGTVKAGFDKVTHEIPMLSLGDVFSQAELQEFVDRL----EQNVGHPVDYNCE 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G  V  + RG+G  GED++A I+ I +IP+ L+   P  I+VRGE 
Sbjct: 121 LKIDGLALSLRYEDGVLVQGSTRGNGTVGEDITANIKTIKSIPQRLTR--PLTIDVRGEC 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+   A G   +ANPRNAA+G LR+L+   +  R L+ F++ +     + 
Sbjct: 179 YMPKAAFAALNERREAAGEPVFANPRNAAAGTLRQLDSRVVAERQLSTFMYNIADYEPLT 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+ Q +ML +   LGF +N   + A++   + SY +  ++ R  L Y IDG+V K +   
Sbjct: 239 ARTQSDMLTEFADLGFAINPDFKVAHSMADVFSYIDHYQNERPELAYGIDGIVIKANPLP 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG   + PRW I+ KF   +  T L D++  +GRTG++TP A +EPV + G  +  
Sbjct: 299 LQRSLGATVKVPRWAIAFKFPPDEQPTLLKDVEWTVGRTGVVTPTAVMEPVQLAGTTVAR 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             +D+R+GD VL+ +AG++IP++  + + +R  DAQP   
Sbjct: 359 ASLHNPDYV-----------AAKDVRIGDTVLLHKAGDIIPEISSVDLAKRPKDAQPLVI 407

Query: 431 PSFCPICQSRVV--------RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P+ CP C + +V        R +NPK               C AQ  E L HF SR+A N
Sbjct: 408 PTTCPSCGAPLVHLEDEVALRCINPK---------------CPAQVQEGLVHFASRNAMN 452

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG + +   + +       R+ +D+  L R  +     ++ I    D S   L  +I
Sbjct: 453 IDGLGPRIIAQLYAN-------RLVSDVAGLYRLTKAQLLTLDKI---KDKSAEKLLTAI 502

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           ++ R+ SLER +F LGIRHVGA++AR +A+++ +       I  ++A + ++   +  + 
Sbjct: 503 DRSRDNSLERLLFGLGIRHVGAKVARLIAQHFGT-------IEALMAASQEE---IAAID 552

Query: 603 LVGDIIAQAIVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            +GD+IA A+V+++++       R + AV        PS    E + +S    K++V TG
Sbjct: 553 SMGDVIANAVVQYFESDEVHTLIRELQAVNVNTTYQGPSATVAEDS-NSWFAGKRVVLTG 611

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            L+   R  A +++   GA V   +S+KTD++I G + GSKL+KAQQL + + +E +F
Sbjct: 612 KLESFTRPDATQWLQAHGATVMGSVSKKTDLVIAGSDAGSKLQKAQQLDITVWDEARF 669


>gi|58426627|gb|AAW75664.1| DNA ligase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 961

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 269/863 (31%), Positives = 427/863 (49%), Gaps = 184/863 (21%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE+AR+    L + I   D  YY  + P I D++YD L R    +   +P+L  ++ P+ 
Sbjct: 126 IERARE----LRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTADSPS- 180

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GG +  S  KV HSIP LSL   ++  +++ F+ RI+R  +    N + F++EPK
Sbjct: 181 --MRVGGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFR--RMGSSNPLEFSVEPK 236

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++RYE GKFV    RGDG  GEDVS  IR I ++P ++   N+P I+EVRGEVY
Sbjct: 237 FDGLAISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGEVY 296

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG------- 244
           + ++ F   N   +A G K  ANPRN A+G LR+L+      R L+FF +G+G       
Sbjct: 297 MPRDGFSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVEQD 356

Query: 245 ---KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
              +  +  A     ML ++R  GFPV++ V       G+++YY  +   R  LP+DIDG
Sbjct: 357 LFEEIPQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDG 416

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYK+D+ + Q+++G  +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV
Sbjct: 417 VVYKLDDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPV 476

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           ++ G ++TNATLHN D I  LD           +RVGD V+V+RAG+VIP+V  ++ ++R
Sbjct: 477 HVAGVIVTNATLHNADQIARLD-----------VRVGDTVIVRRAGDVIPEVAAVVADQR 525

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P  Q +  P+ CP+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A 
Sbjct: 526 PPATQSWQMPTQCPVCGSEIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAM 579

Query: 482 NIE-------------GLGKQQLDFFFKSEDPAFSIRI-----PADIFTLQRRQQTST-- 521
           +++             G+ +   D +  + D    +R+         F  + R+  ++  
Sbjct: 580 DVDGLGEKFIEVLVDSGVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGA 639

Query: 522 -TKIE-NILGFG-DVS--------------------------------VTNLYDSINKRR 546
             ++E  ++G G D++                                  NL ++I   R
Sbjct: 640 YAQLEATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSR 699

Query: 547 NISLERFIFSLGI---------------------RH-----------VGAEIARSLAKYY 574
           + +LERF+F+LGI                     RH           +G E+ARSL  ++
Sbjct: 700 DTTLERFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFF 759

Query: 575 LSYQNFAQEINNIIAHNN------------------DDWLSLIRVPLVGDI--------- 607
               N  + I++++A                      + L  + +P V  I         
Sbjct: 760 DQPGN-QKAIDHLLARKVRIGDTHPPSPKLRGELRLANLLEDLEIPKVTPIRAAQIATAF 818

Query: 608 ----------------------IAQAIVEFYQNPRN-ICAVEA-----LLKEVSPSIGRH 639
                                 +A+++  +   P N   AV+A      L  + P  G  
Sbjct: 819 GSIDALRNGGPEPLVEAGVPQSVAESLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEE 878

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           +   +  ++ + +V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+
Sbjct: 879 K---TGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLD 935

Query: 700 KAQQLGVKIMNEEQFLFLLQQYN 722
           KAQ LGV+I +E + L  L ++ 
Sbjct: 936 KAQSLGVEIWDEARLLAFLGEHG 958


>gi|84623945|ref|YP_451317.1| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|123752764|sp|Q2P334|DNLJ_XANOM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84367885|dbj|BAE69043.1| DNA ligase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 841

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 270/863 (31%), Positives = 428/863 (49%), Gaps = 184/863 (21%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE+AR+    L + I   D  YY  + P I D++YD L R    +   +P+L  ++ P+ 
Sbjct: 6   IERARE----LRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTADSPS- 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GG +  S  KV HSIP LSL   ++  +++ F+ RI+R  +    N + F++EPK
Sbjct: 61  --MRVGGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFR--RMGSSNPLEFSVEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++RYE GKFV    RGDG  GEDVS  IR I ++P ++   N+P I+EVRGEVY
Sbjct: 117 FDGLAISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGEVY 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG------- 244
           + ++ F   N   +A G K  ANPRN A+G LR+L+      R L+FF +G+G       
Sbjct: 177 MPRDGFSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVEQD 236

Query: 245 ---KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
              +  +  A     ML ++R  GFPV++ V       G+++YY  +   R  LP+DIDG
Sbjct: 237 LFEEIPQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYK+D+ + Q+++G  +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV
Sbjct: 297 VVYKLDDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           ++ G ++TNATLHN D I  LD           +RVGD V+V+RAG+VIP+V  ++ ++R
Sbjct: 357 HVAGVIVTNATLHNADQIARLD-----------VRVGDTVIVRRAGDVIPEVAAVVADQR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P  Q +  P+ CP+C S +VR+     G+  A  RC+G L C AQ+ E  +HFVSR A 
Sbjct: 406 PPATQSWQMPTQCPVCGSEIVRE----EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAM 459

Query: 482 NIE-------------GLGKQQLDFFFKSEDPAFSIRI-----PADIFTLQRRQQTST-- 521
           +++             G+ +   D +  + D    +R+         F  + R+  ++  
Sbjct: 460 DVDGLGEKFIEVLVDSGVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGA 519

Query: 522 -TKIE-NILGFG-DVS--------------------------------VTNLYDSINKRR 546
             ++E  ++G G D++                                  NL ++I   R
Sbjct: 520 YAQLEATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSR 579

Query: 547 NISLERFIFSLGI---------------------RH-----------VGAEIARSLAKYY 574
           + +LERF+F+LGI                     RH           +G E+ARSL  ++
Sbjct: 580 DTTLERFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFF 639

Query: 575 LSYQNFAQEINNIIAHNN------------------DDWLSLIRVPLVGDI--------- 607
               N  + I++++A                      + L  + +P V  I         
Sbjct: 640 DQPGN-QKAIDHLLARKVRIGDTHPPSPKLRGELRLANLLEDLEIPKVTPIRAAQIATAF 698

Query: 608 ----------------------IAQAIVEFYQNPRN-ICAVEA-----LLKEVSPSIGRH 639
                                 +A+++  +   P N   AV A      L  + P  G  
Sbjct: 699 GSIDALRNGGPEPLVEAGVPQSVAESLATWLLVPANDTLAVNAQKKLSALLAMMPEAGEE 758

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           +   +  ++ + +V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+
Sbjct: 759 K---TGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLD 815

Query: 700 KAQQLGVKIMNEEQFLFLLQQYN 722
           KAQ LGV+I +E + L  L ++ 
Sbjct: 816 KAQSLGVEIWDEARLLAFLGEHG 838


>gi|21242377|ref|NP_641959.1| NAD-dependent DNA ligase LigA [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|81803317|sp|Q8PM07|DNLJ_XANAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21107814|gb|AAM36495.1| DNA ligase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 833

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 266/836 (31%), Positives = 424/836 (50%), Gaps = 169/836 (20%)

Query: 32  DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           +D  Y+Y    +P + D++YD L R  +A+  A P+LA ++ P     ++G        +
Sbjct: 19  EDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPT---QRVGHLAASRFAE 75

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H++P LSL   ++ E++ +F+ RI    ++ +     F+ EPK+DG  I++RYE G+F
Sbjct: 76  VRHAMPMLSLGNAFSDEEVTEFVRRIS---ERLEVRQPLFSAEPKLDGLAISLRYENGEF 132

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V  A RGDG +GEDVSA +R +  IP R+     P ++EVRGEVY+ +  F A N +M A
Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPRVLEVRGEVYMPRAAFEAYNAQMRA 192

Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265
            G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE    +    +L ++R  G
Sbjct: 193 QGGKILANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQAHSAILAQLRAWG 252

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           FPV+  V       G+++YY  +   R  L +DIDG+VYK+D+ + Q+++G  +R+PRW 
Sbjct: 253 FPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN D I  LD  
Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ CP+C S +VR+ 
Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVRE- 420

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------D 492
               G+  A  RC+G L C AQ+ E  +HFVSR A +++GLG++ +             D
Sbjct: 421 ---EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVAD 475

Query: 493 FFFKSEDPAFSIRI--PAD---IFTLQRRQQTST---TKIE-NILGFG-------DVSVT 536
            +  S D    +R+   AD    F  + R+  ++    ++E +++G G       DV  T
Sbjct: 476 LYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYAQLEASVVGIGVDLAGERDVPQT 535

Query: 537 --------------------------NLYDSINKRRNISLERFIFSLGIRH--------- 561
                                     NL ++I   R+ +LERF+F+LGI H         
Sbjct: 536 WQADLLRAGLPSFDWNRKKIATKWAENLIEAIEISRDTTLERFLFALGIEHVGESTAKAL 595

Query: 562 -----------------------VGAEIARSLAKYYLSYQNFAQEINNIIAH-------- 590
                                  +G E+ARSL  ++    N  + I++++A         
Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGN-QKAIDHLLARKVRIGDTH 654

Query: 591 ----------NNDDWLSLIRVPLVGDI-------------------------------IA 609
                     +  + L  + +P V  I                               +A
Sbjct: 655 PPSPKLRGELSLANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEAGVPQSVA 714

Query: 610 QAIVEFYQNPRN-ICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +++  +   P N   AV A   L E+   +    +  +  ++ + +V TGTL  + R  A
Sbjct: 715 ESLAAWLLVPANDTLAVNAQRKLSELLAMLPEAGEEKTGPLDGQTVVITGTLAALTRDAA 774

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L  + 
Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGDHG 830


>gi|227530245|ref|ZP_03960294.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540]
 gi|227349834|gb|EEJ40125.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540]
          Length = 680

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 246/719 (34%), Positives = 404/719 (56%), Gaps = 59/719 (8%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q IP+  L+++QA++E+  L ++I+     YY+   P + D  YD   +R   I   FP+
Sbjct: 4   QSIPVAQLTLDQAKEEIGPLRKQIAQWGKEYYEQDSPTVEDYVYDRQYQRLVQIEQRFPE 63

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-D 123
           L   + P+ P  ++GGE    L KV H IP LS+  +++IE+L  F    +R  + +D D
Sbjct: 64  L---QTPDSPTQQVGGEAESQLTKVRHEIPMLSMGDVFSIEELMDFN---HRQQENRDVD 117

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  +++ YE GK +  + RG+G+ GEDV+  +R I ++P+   L  P 
Sbjct: 118 VEAEYNLELKIDGLSLSLVYENGKLIQGSTRGNGNIGEDVTENVRTIKSVPQ--ELPEPL 175

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242
            +E RGE Y+ K  F  LN +    G+  +ANPRNAA+G LR+L+P     R L+ F++ 
Sbjct: 176 SVEFRGECYMPKESFAKLNAQREDDGQPIFANPRNAAAGSLRQLDPKVTAKRDLDTFMYY 235

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           + +  ++    Q E L +MR LGF VN   R  +    I  Y NE  + R  L Y IDG+
Sbjct: 236 VPEYQKLGVTTQAEALDRMRELGFKVNPHNRVVHNRQEIEDYINEYTAKRDQLAYGIDGI 295

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV++   ++ LG   + PRW I++KF  ++  T + DI+  +GRTG +TP A ++PV 
Sbjct: 296 VEKVNDLETEEALGNTVKVPRWEIAYKFPPEEQPTIIRDIEWTVGRTGNVTPTAVMDPVQ 355

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A+LHN DY+K            +D+R+GD V + +AG++IP++  + +++R 
Sbjct: 356 LAGTTVSRASLHNPDYLK-----------EKDVRLGDTVYLHKAGDIIPEISKVNLSKRP 404

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D++P+  P+ CP C S +V  L+ +      A RC   + C AQ  E L HF SR+A +
Sbjct: 405 ADSEPYQIPTKCPACDSELVH-LDDE-----VALRCINPM-CPAQIKEGLAHFASRNAMD 457

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I GLG + ++  +  +     I   A ++ L   Q  +  K      FG+ S TNL  SI
Sbjct: 458 IAGLGPKIIEQLWNKK----LIHDVAGLYALTEDQLLTLDK------FGEKSATNLLTSI 507

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N  RN S+ER +F LGIRHVGA+ AR +  ++        +++ ++  + D+   +  V 
Sbjct: 508 NNSRNNSVERLLFGLGIRHVGAKAARLIMAHF-------NDLDQLMGASADE---ISAVD 557

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEK-NVSSEIENKKLVFT 655
            +G  I +++  ++ N +    V++L++E+  S      +G     + SS+   K++V T
Sbjct: 558 GIGPTIGESVETYFANEQ----VQSLIEELRQSGLNFTYLGSTTTVDESSDWNGKRVVLT 613

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           G L ++ R +A++++   GA V+  +S+KTDI+I G+  GSKL KAQ+LGV + +E++F
Sbjct: 614 GKLVEMTRTEAKDWLEVHGAKVTGSVSKKTDIVIAGEKAGSKLTKAQELGVDVWDEQRF 672


>gi|292657108|ref|YP_003537005.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2]
 gi|291370943|gb|ADE03170.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2]
          Length = 699

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 250/716 (34%), Positives = 386/716 (53%), Gaps = 50/716 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P E+LS E A  + + L + +  HD  YY  + P++ D+ YDAL  R  A+  AF DL  
Sbjct: 23  PAESLSREAAEGQAALLREAVREHDHRYYVAADPLVSDAAYDALFSRLVALEDAF-DLDT 81

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +   N P N++GGE   +L  V H  P LS+++  + +DLR+F  R+     +++  ++ 
Sbjct: 82  T---NSPTNRVGGEPIDALETVEHVAPMLSIDQSTDADDLREFDERV-----RREVGAVD 133

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  EPK DG  + + YE G+FV AA RGDG  G+DVSA ++ IPT+P  L  + P+ + V
Sbjct: 134 YVCEPKFDGLSVEVVYEDGEFVRAATRGDGRRGDDVSAQVKTIPTVPLSLRGDHPDRLAV 193

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGE+Y+ K+DF  LN   +  G   +ANPRNAA+G LR L+P+ +  R L  F + +   
Sbjct: 194 RGEIYMPKSDFSDLNARRVEAGEDAFANPRNAAAGTLRNLDPSVVADRPLAVFFYDILDA 253

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S      Q+  L ++R  G  V + + +A      + Y + M++ R  L Y+IDG V KV
Sbjct: 254 S-ARPDSQWAALDRLREWGLRVTDRIERAEDVAEAIDYRDRMQAARDDLDYEIDGTVIKV 312

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    +++LGE++RS RW  ++KF  +   T + DI +Q+GRTG LTPVA L+PV++GG 
Sbjct: 313 DSRDARERLGEKSRSVRWAFAYKFPARHEVTTVRDIVVQVGRTGRLTPVAILDPVDVGGV 372

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATLHN D            R    + VGDRV VKRAG+VIP+VV++  +       
Sbjct: 373 TVSRATLHNPDE-----------RAALGVAVGDRVRVKRAGDVIPQVVEVTED----GGG 417

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP+C S V RD     G L     C+GGL+C AQ+   + HF  + A +I+GL
Sbjct: 418 CYEFPDECPVCGSAVDRD-----GPLAF---CSGGLSCPAQREASIGHFAVKGAMDIDGL 469

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++++         A  +   AD++ L      +   +  + G+G+ S  NL  ++   +
Sbjct: 470 GEERVAQLVD----AGLVETVADLYDL------TADDLAELEGWGETSAENLVAAVENAK 519

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + SL+ F+  L I  VG   AR LA+ + S + F  E +      +     L  VP VG+
Sbjct: 520 HPSLDSFLVGLSIPEVGEATARGLAREFGSIEAFPIEADAEEDEFDAFEERLTTVPDVGE 579

Query: 607 IIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            +A+ + +F++N  N   + ALL + V P      ++   E++    V TGTL    R  
Sbjct: 580 TVARRVRDFFENADNRAVIRALLDRGVDPE---PVESGGDELDGLTFVVTGTLAA-SRSD 635

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
             E V   G  V+  +S  TD ++VG+NPG SK + A+   V  + E +F  LL +
Sbjct: 636 VTELVESHGGNVTGSVSGNTDYLVVGENPGRSKRDDAEANDVPTLAETEFEALLAE 691


>gi|332653279|ref|ZP_08419024.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16]
 gi|332518425|gb|EGJ48028.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16]
          Length = 657

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 247/704 (35%), Positives = 387/704 (54%), Gaps = 54/704 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E+  L +E++  +  YY    P + D +YD   RR + +  A P+L     P+ P  ++
Sbjct: 5   QEILELRKELNQANFEYYVKDDPTMSDYDYDHKLRRLEELEGAHPELIT---PDSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG+   S  +VTH +P  SL+ +++ ++LR F  R+     K     + +++EPK+DG  
Sbjct: 62  GGKALESFQQVTHRVPLESLQDVFDFDELRAFDQRVRGVEPK-----VSYSVEPKVDGLS 116

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197
           + + Y+ G+FV  A RGDG  GEDV+  ++ + +IP  LS+ ++P  + VRGEVY+ K  
Sbjct: 117 VALEYQDGQFVRGATRGDGLVGEDVTENLKTVKSIP--LSIPDVPGTLIVRGEVYMPKKV 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN+E    G   +ANPRNAA+G LR+L+P     R L+  V  +            E
Sbjct: 175 FHALNEEREKRGEALFANPRNAAAGSLRQLDPKIAAQRRLDIAVFNIQWAENEDFHSHTE 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +  +   GF V   V   +T    V     +   R   P+DIDG V KVD+ + ++ LG
Sbjct: 235 GINYLADKGFKVIPHV-ICSTIEEAVEQVKAIGEGRENYPFDIDGAVIKVDDLAQRQTLG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PRW  ++K+  +   +RL DI IQ+GRTG+LTP A LEPV + G  +TNATLHN+
Sbjct: 294 STAKFPRWAAAYKYPPEVKPSRLTDIVIQVGRTGVLTPKAVLEPVRLAGTTVTNATLHNQ 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD VLV++AGE+IP+V+ +++ +R  DA P+ FP  CP 
Sbjct: 354 DFIT-----------EKDIRIGDTVLVRKAGEIIPEVLSVVMEKRPVDAVPYRFPDVCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           C + V RD +        AH RCTG   C AQ L  L HF SRDA +IEGLG   ++   
Sbjct: 403 CGAPVARDED-------GAHIRCTGA-ECPAQLLRNLAHFASRDAMDIEGLGIAVVENLV 454

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K    A  ++ P D++ L    +    ++E +   G  S  NL  +I K ++  L R +F
Sbjct: 455 K----AGLVKTPGDLYFL---HEEDVAELERM---GKKSAQNLLSAIEKSKSQDLSRLLF 504

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           + GIR VG +  + LA+ + S       ++N+ A   ++   L +V  +G I AQ+IV++
Sbjct: 505 AFGIRQVGQKAGKILAQRFGS-------LDNLQAATVEE---LTQVDDIGAITAQSIVDW 554

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + +P++   + A LKE   ++   +K        K  V TGTL +  R +A + +   G 
Sbjct: 555 FASPQSQHLI-ARLKEAGVNMQAEQKGEDQRFAGKTFVLTGTLDRFTRAEATKMIEDRGG 613

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  +S+KT  ++ G+  GSKL KAQ+LGV ++ +E+FL L++
Sbjct: 614 KAAGSVSKKTTYVVAGEAAGSKLRKAQELGVPVLTQEEFLALME 657


>gi|9107768|gb|AAF85353.1|AE004063_2 DNA ligase [Xylella fastidiosa 9a5c]
          Length = 837

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 247/688 (35%), Positives = 369/688 (53%), Gaps = 107/688 (15%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP++     Q   EL    QE +YH   Y+   +P I D++YD + R  DA+  A+PDL
Sbjct: 7   MIPLDP---AQRAAELRCRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEAAYPDL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI        + +
Sbjct: 61  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITAC---LGETA 114

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP R+ S   P +
Sbjct: 115 PGFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 174

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+P     R L+F+ +G+
Sbjct: 175 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 234

Query: 244 GK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ T ++      E+L  +R  GFPV+  V        +++YY  M++IR TLP+DIDG+
Sbjct: 235 GEVTDDVSFHRHSEILASLRAWGFPVSPLVELVYGSEELLNYYRRMETIRDTLPFDIDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q+++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 295 VYKLDDLSGQREMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 355 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVTVITDSRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             A  +S P  CP+C S +VR+    TG   A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 404 LGATAWSMPMACPVCGSEIVRE----TG--AAVWRCSGELACPAQRKEAIRHFVSRRAMD 457

Query: 483 IEGLGKQQLDFFF--------------------------KSEDPAFSIRIPADIFTLQRR 516
           +EGLG + ++                              ++ P   +R   D  T  R 
Sbjct: 458 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 517

Query: 517 QQTSTTKIENIL--------GFGDVS--------------------------VTNLYDSI 542
           QQ     +E IL        G GDV                             NL  +I
Sbjct: 518 QQ-----LEEILRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAI 572

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           ++ R  +LERF+F+LG+ HVG   A++LA  +           ++       W     VP
Sbjct: 573 DRSRQTTLERFLFALGMTHVGETTAKALAHSF----------GDLAIIRQLPWPLFKCVP 622

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK 630
            +G  +A+AI  F   P N  A++ L++
Sbjct: 623 DIGGEVARAIGHFMDQPANQQAIDDLVE 650



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 11/121 (9%)

Query: 609 AQAIVEFYQNPRNIC-------AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           AQ++ E++Q+P NI          + LL ++ PS  R     ++ +  + +V TG L  +
Sbjct: 719 AQSLTEWFQSPDNISLARRLQHCCDVLLAQL-PSADRAH---TAPLNGQSVVLTGKLASL 774

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A   +  LGA +   +S+KT  ++ G++PGSKL+KA  L V I +E + L  L QY
Sbjct: 775 TREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHALHVDIWDEARLLAFLGQY 834

Query: 722 N 722
           +
Sbjct: 835 S 835


>gi|146296740|ref|YP_001180511.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166215569|sp|A4XK85|DNLJ_CALS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145410316|gb|ABP67320.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 673

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 247/699 (35%), Positives = 393/699 (56%), Gaps = 51/699 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  +
Sbjct: 6   KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYIF---PDSPTQR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     +V H +P LSL  +++  +L  F  R+       D N   + +E KIDG 
Sbjct: 63  VGGKVKEGFKEVVHRVPLLSLSNVFSEGELYDFDRRLRELLGTDDFN---YVVEYKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K++
Sbjct: 120 SVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLKLKDDIN--IVVRGEVFMPKDE 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  + +  E   K   E
Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNV-QWCEKELKTHDE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ LGF V+      +          +++  R  LP++IDG V K+++ +L+   G
Sbjct: 237 ALRYLKYLGFKVSPDYVVCSNIKEAYEAIKKVEEKRGLLPFEIDGAVVKLNQLALRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW +++KF  ++  T+L+DI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 STAKSPRWAVAYKFPPEKKETKLIDIEVNVGRTGILTPTAVLEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R  + + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVVVQKAAEIIPEVVEVVFSKRTGNERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCT G+ C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMIVKNLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+         + N+  FG  S  NL  +I   +   L+R IF+
Sbjct: 459 RG----LIKTPADIYDLK------FDDLVNLERFGVKSTNNLLKAIEASKKRPLDRLIFA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S       I+++     ++   L+++P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEEE---LLKLPDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +  +    +E L K    ++   EK   S+I +    V TG L K  R +A+E +  LGA
Sbjct: 559 RQDQTKHLIERLKKAGVNTVA--EKKAKSDILKGYTFVLTGALSKYSRSQAKEILESLGA 616

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            VS  +S+KT  +IVG++PGSKL KAQ+L VKI+ E+ F
Sbjct: 617 RVSESVSKKTTAVIVGEDPGSKLTKAQELNVKILYEQDF 655


>gi|77747612|ref|NP_299833.2| NAD-dependent DNA ligase LigA [Xylella fastidiosa 9a5c]
 gi|166216281|sp|Q9PAG2|DNLJ_XYLFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 831

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 247/688 (35%), Positives = 369/688 (53%), Gaps = 107/688 (15%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP++     Q   EL    QE +YH   Y+   +P I D++YD + R  DA+  A+PDL
Sbjct: 1   MIPLDP---AQRAAELRCRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEAAYPDL 54

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI        + +
Sbjct: 55  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITAC---LGETA 108

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP R+ S   P +
Sbjct: 109 PGFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 168

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+P     R L+F+ +G+
Sbjct: 169 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 228

Query: 244 GK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ T ++      E+L  +R  GFPV+  V        +++YY  M++IR TLP+DIDG+
Sbjct: 229 GEVTDDVSFHRHSEILASLRAWGFPVSPLVELVYGSEELLNYYRRMETIRDTLPFDIDGI 288

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q+++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 289 VYKLDDLSGQREMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 348

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 349 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVTVITDSRP 397

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             A  +S P  CP+C S +VR+    TG   A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 398 LGATAWSMPMACPVCGSEIVRE----TG--AAVWRCSGELACPAQRKEAIRHFVSRRAMD 451

Query: 483 IEGLGKQQLDFFF--------------------------KSEDPAFSIRIPADIFTLQRR 516
           +EGLG + ++                              ++ P   +R   D  T  R 
Sbjct: 452 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 511

Query: 517 QQTSTTKIENIL--------GFGDVS--------------------------VTNLYDSI 542
           QQ     +E IL        G GDV                             NL  +I
Sbjct: 512 QQ-----LEEILRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAI 566

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           ++ R  +LERF+F+LG+ HVG   A++LA  +           ++       W     VP
Sbjct: 567 DRSRQTTLERFLFALGMTHVGETTAKALAHSF----------GDLAIIRQLPWPLFKCVP 616

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK 630
            +G  +A+AI  F   P N  A++ L++
Sbjct: 617 DIGGEVARAIGHFMDQPANQQAIDDLVE 644



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 11/121 (9%)

Query: 609 AQAIVEFYQNPRNIC-------AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           AQ++ E++Q+P NI          + LL ++ PS  R     ++ +  + +V TG L  +
Sbjct: 713 AQSLTEWFQSPDNISLARRLQHCCDVLLAQL-PSADRAH---TAPLNGQSVVLTGKLASL 768

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A   +  LGA +   +S+KT  ++ G++PGSKL+KA  L V I +E + L  L QY
Sbjct: 769 TREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHALHVDIWDEARLLAFLGQY 828

Query: 722 N 722
           +
Sbjct: 829 S 829


>gi|157691416|ref|YP_001485878.1| NAD-dependent DNA ligase LigA [Bacillus pumilus SAFR-032]
 gi|190359234|sp|A8FAQ1|DNLJ_BACP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157680174|gb|ABV61318.1| DNA ligase (NAD(+)) [Bacillus pumilus SAFR-032]
          Length = 668

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 243/714 (34%), Positives = 403/714 (56%), Gaps = 57/714 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A++ +  L + ++ ++  Y+   +P + D+EYDA  R   ++    PDL  ++ P+  
Sbjct: 4   EAAKRRIEELHEILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAADSPS-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +  +  KV H  P LSL   +N +DL  F  R+    ++   + I + +E KI
Sbjct: 62  -QRVGGAVLDAFQKVRHGTPMLSLGNAFNEQDLLDFDRRV----RQAVGDDIAYNVELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I +IP  L +  P  IEVRGE ++ 
Sbjct: 117 DGLAVSLRYENGVFVRGATRGDGTTGEDITENLKTIRSIP--LKIKRPLSIEVRGEAFMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252
           K  F ALN++ +    +P+ANPRNAA+G LR+L+ T I   R L+ FV+ + +  EI  +
Sbjct: 175 KPSFEALNEKRLQNEEEPFANPRNAAAGSLRQLD-TKIAAKRNLDIFVYSIAELDEIGVE 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L  +  LGF  N   R   T   ++     +K+ R+   Y+IDG+V KVD  + Q
Sbjct: 234 SQSEGLDLLDELGFKTNKERRTCQTIEEVIELIETLKTKRADFSYEIDGIVIKVDSLAQQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  A+SPRW +++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  +  A+
Sbjct: 294 EELGFTAKSPRWAVAYKFPAEEVVTKLLDIELSVGRTGVITPTAILEPVKVAGTTVQRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED IK            +DIR+ D+V+VK+AG++IP+V  +++++R  + +PF  P+
Sbjct: 354 LHNEDLIK-----------EKDIRLLDQVIVKKAGDIIPEVAGVLIDQRTGEEKPFHMPT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +VR      G++  A RC     C AQ  E L HFVSR+A NI+GLG++ + 
Sbjct: 403 ECPECHSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVIT 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             FK +      R+ +D++ L + +     ++      G+ SV NL  SI + +  SLER
Sbjct: 456 QLFKEQ---LVSRV-SDLYRLTKEELIQLERM------GEKSVENLLRSIEQSKENSLER 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIR +G++ A++LA ++       Q               L+ V  +G+ +A A+
Sbjct: 506 LLFGLGIRFIGSKAAKTLALHFGDIDQLKQATKE----------QLLEVDEIGEKMADAV 555

Query: 613 VEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           V +++    +  +  L      +    P   + E++  S    K +V TG L+++ R+ A
Sbjct: 556 VTYFEKEEILNLLNELKELGVNMTYTGPKPVKVEES-DSYFAGKTIVLTGKLEEMARNDA 614

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +  LG  ++  +S+KTD++I G+  GSKL KA++L ++I +E + L  L++
Sbjct: 615 KAAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDEVKMLEELKK 668


>gi|313623350|gb|EFR93577.1| DNA ligase, NAD-dependent [Listeria innocua FSL J1-023]
          Length = 671

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 255/711 (35%), Positives = 380/711 (53%), Gaps = 66/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL ++  + SY    YY    P + D+EYD   +    I  A P+      P  P  ++
Sbjct: 8   EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KV H  P LSL   +N +DL  F  RI    + K  + I +  E KIDG  
Sbjct: 62  GGEVLEGFKKVEHDTPMLSLANAFNRDDLADFDRRI----RDKVGDDISYMCELKIDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++++YE GK+   A RGDG  GED++A +R I +IP  + L     IEVRGE ++ K  F
Sbjct: 118 VSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIP--MKLKKAYSIEVRGEAFMPKRSF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256
             LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+  +    
Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  +    + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSNLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGSEKPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 ----MHLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N        +   ND          +G+ +A +   ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKIADKETLTSIND----------IGEKMADSXXTYF 556

Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667
            N      V  LL+E+  +       G   +N+S E      K +V TG L+K+ R+ A+
Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEKLTRNDAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|327475235|gb|AEA77212.1| DNA ligase [Exiguobacterium sp. EPVM]
          Length = 664

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 252/705 (35%), Positives = 399/705 (56%), Gaps = 53/705 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           + ++ Q+++ +   YY   +P + D+EYD L      I   +P+L RS  P+ P  ++GG
Sbjct: 7   VEAIRQKLNQYGYEYYVLDRPSVPDAEYDRLMNELIEIETDYPEL-RS--PDSPTQRVGG 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
               +  KVTH  P LSL  +++ E+L +++ RI    +K    S  F  E K DG  ++
Sbjct: 64  APLDAFVKVTHDTPMLSLGNVFSKEELVEWVDRI----EKDLGYSPLFVAELKFDGLAVS 119

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           ++YE G+FV  A RGDG +GED++  +R I +IP  L LN     EVRGE Y+ K  F  
Sbjct: 120 LKYEDGRFVRGATRGDGTTGEDITQNLRTIRSIP--LRLNEDVTFEVRGEAYMPKRSFEH 177

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           LNDE   +G   +ANPRNAA+G LR+L+     +R L FF +GL  T ++ A    E L+
Sbjct: 178 LNDERERLGEPLFANPRNAAAGSLRQLDSKIAASRNLAFFAYGLVSTDDLVAS-HDESLE 236

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +R LG  V+     A+T   +  Y     + RS LPY+IDG+V KV  +  Q+QLG  A
Sbjct: 237 YLRHLGIAVSQEYTTAHTAEELWGYIETYVTKRSELPYEIDGIVIKVAGYEEQEQLGFTA 296

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           +SPRW +++KF  ++  T + D+D  +GRTG +TP AR  PV++ G+ +T ATLHNED+I
Sbjct: 297 KSPRWAVAYKFPAEEVVTTIEDVDFSVGRTGKVTPRARFAPVSVAGSTVTYATLHNEDFI 356

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
                        +D+ +GDRV++K+AG+VIP VV  +V+ER  +     FP+ CP C+S
Sbjct: 357 L-----------EKDLHIGDRVVIKKAGDVIPAVVSALVSERTGEETEIVFPTHCPACES 405

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +VR      G+  A HRC     C AQ LE L HFVSR A NI+GLG++ +     S+ 
Sbjct: 406 ELVR----LEGE--ADHRCVNP-ECPAQLLEGLIHFVSRPAMNIDGLGEKVITQLHASD- 457

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +   AD++ L R    +  ++      G+ SVTNL  +I++ +  SLER +F+LGI
Sbjct: 458 ---LVHNVADLYRLDRDALLALDRM------GETSVTNLLAAIDQSKQNSLERVLFALGI 508

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           R VG + A  +A+ +       + +  ++  + D+   L  +  +G  +A++I  +++ P
Sbjct: 509 RLVGQKAAVLIAERF-------ETMEAVMEASIDE---LTSIDGIGTKMAESISLYFEKP 558

Query: 620 RNICAVEALLKE-VSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                V  L +  V+ +    +++V ++  +  K +V TG L ++ R +A + +  LGA 
Sbjct: 559 EARDLVRELGEAGVNLTFKGAKRSVDTDAPLAGKTVVLTGKLHEMTRGEAGKKLELLGAS 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL-FLLQQ 720
           V+  +S+ TD+++ G+  GSKL KA+ LG+++ +E   L FL +Q
Sbjct: 619 VTGSVSKNTDLLVAGEKAGSKLTKAESLGIEVWDEAALLAFLAEQ 663


>gi|227512904|ref|ZP_03942953.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577]
 gi|227083904|gb|EEI19216.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577]
          Length = 675

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 249/717 (34%), Positives = 386/717 (53%), Gaps = 59/717 (8%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +  E ++ +QA      L ++++   D YY Y  P + DS YD   ++   +   FP + 
Sbjct: 1   MAFEDMTEQQAESAARELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV 60

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  K+G        KV H IP LSL  +++IE+L+ F  R+       D  S+
Sbjct: 61  T---PDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADRL------SDSESV 111

Query: 127 FF--TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            F    E KIDG  I++RYE G  V  A RG+G  GED++  ++ I +IP+ LS   P  
Sbjct: 112 PFEYNCELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIPQRLSR--PIN 169

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           IEVRGE Y+ K  F+ LN +    G  P+ANPRNAA+G LR+L+      R L+ F++ +
Sbjct: 170 IEVRGECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNV 229

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               ++ +  Q  ML++++ LGF +N+  + A+    I  Y       R TL Y IDG+V
Sbjct: 230 ANYDDLESDTQSGMLEELKKLGFTINSDYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIV 289

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+   LQ+ LG   + PRW I++KF  ++A T + DI+  +GRTG++TP A ++ V +
Sbjct: 290 IKVNSLPLQRSLGATVKVPRWAIAYKFPPEEAETTVRDIEWTVGRTGVVTPTAVMDEVTL 349

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A+LHN DY++            +DIR+GD V + +AG++IP++   + ++R  
Sbjct: 350 AGTTVSRASLHNPDYLQ-----------EKDIRIGDTVRLHKAGDIIPEISTYVKDKRQV 398

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+QP+  P+ CP C S +V  L+ +      A RC     C AQ  E L HF SRDA NI
Sbjct: 399 DSQPYEIPTECPSCGSELVH-LDEE-----VALRCINP-QCPAQLKEGLTHFASRDAMNI 451

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG + +   FK       +   A ++ L   Q  +  K      FG+ S  NL  +I+
Sbjct: 452 DGLGPKIIGQLFKKH----MLTDVAGLYGLTFDQLMTLDK------FGEKSAGNLLTAID 501

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             RN S ER +F LGIRHVGA+ AR +A+ + +           IA           +  
Sbjct: 502 NSRNNSCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDATAQEIAE----------IDT 551

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHE---KNVSSEIENKKLVFTGT 657
           +G IIA ++V ++  P++   + + LK+V  +   +G  +   K   S    K+LV TG 
Sbjct: 552 MGMIIADSVVTYFSMPQSKELI-SQLKQVGVNMDYLGATDEALKESDSVFNGKRLVLTGK 610

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           LQ I R +A  ++   GA VS  +S+KTDI++VG++PGSK +KA+ LG+ + +E +F
Sbjct: 611 LQHITRPEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIDVWDENRF 667


>gi|294626370|ref|ZP_06704972.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599371|gb|EFF43506.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 833

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 263/836 (31%), Positives = 422/836 (50%), Gaps = 169/836 (20%)

Query: 32  DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           +D  Y+Y    +P + D++YD L R  +A+  A P+LA ++ P     ++G        +
Sbjct: 19  EDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPT---QRVGHLAASRFAE 75

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H++P LSL   ++ E++ +F+ RI    ++ +     F+ EPK+DG  I++RYE G+F
Sbjct: 76  VRHALPMLSLGNAFSDEEVAEFVRRIG---ERLEVKQPLFSAEPKLDGLAISLRYENGEF 132

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V  A RGDG +GEDVSA +R +  IP R+     P+++EVRGEVY+ +  F A N +M A
Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRAAFEAYNAQMRA 192

Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265
            G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE    +    +L ++R  G
Sbjct: 193 QGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTHSAILAQLRAWG 252

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           FPV+  V       G+++YY  +   R  L +DIDG+VYK+D+ + Q+++G  +R+PRW 
Sbjct: 253 FPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN D I  LD  
Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ CP+C S +VR+ 
Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVRE- 420

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------D 492
               G+  A  RC+G L C AQ+ E  +HFVSR A +++GLG++ +             D
Sbjct: 421 ---EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVAD 475

Query: 493 FFFKSEDPAFSIRI--PAD---IFTLQRRQQTST---TKIE-NILGFG-------DVSVT 536
            +  S D    +R+   AD    F  + R+  ++    ++E +++G G       DV  T
Sbjct: 476 LYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYAQLEASVVGIGVDLAGERDVPQT 535

Query: 537 --------------------------NLYDSINKRRNISLERFIFSLGI----------- 559
                                     NL ++I   R+ +LERF+F+LGI           
Sbjct: 536 WQADLLRAGLPSFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKAL 595

Query: 560 ----------RH-----------VGAEIARSLAKYY------------------------ 574
                     RH           +G E+ARSL  ++                        
Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDTHP 655

Query: 575 --------LSY-----------------QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
                   LS+                 Q  A  +++  A       +L +  +   ++A
Sbjct: 656 PSPKLREALSFASVLDDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVVA 715

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             ++++   P N     A  + +   + R    +   +  ++ + +V TGTL  + R  A
Sbjct: 716 -TLLQWLDRPENAALASAAQQAMETVLARLPEADALQTGPLDGQTVVITGTLAALTRDAA 774

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L  + 
Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLVFLGDHG 830


>gi|294665962|ref|ZP_06731226.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604265|gb|EFF47652.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 833

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 263/836 (31%), Positives = 422/836 (50%), Gaps = 169/836 (20%)

Query: 32  DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           +D  Y+Y    +P + D++YD L R  +A+  A P+LA ++ P     ++G        +
Sbjct: 19  EDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPT---QRVGHLAASRFAE 75

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H++P LSL   ++ E++ +F+ RI    ++ +     F+ EPK+DG  I++RYE G+F
Sbjct: 76  VRHALPMLSLGNAFSDEEVAEFVRRIG---ERLEVKQPLFSAEPKLDGLAISLRYENGEF 132

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V  A RGDG +GEDVSA +R +  IP R+     P+++EVRGEVY+ +  F A N +M A
Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRAAFEAYNAQMRA 192

Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265
            G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE    +    +L ++R  G
Sbjct: 193 QGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTHSAILAQLRAWG 252

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           FPV+  V       G+++YY  +   R  L +DIDG+VYK+D+ + Q+++G  +R+PRW 
Sbjct: 253 FPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN D I  LD  
Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ CP+C S +VR+ 
Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVRE- 420

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------D 492
               G+  A  RC+G L C AQ+ E  +HFVSR A +++GLG++ +             D
Sbjct: 421 ---EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVAD 475

Query: 493 FFFKSEDPAFSIRI--PAD---IFTLQRRQQTST---TKIE-NILGFG-------DVSVT 536
            +  S D    +R+   AD    F  + R+  ++    ++E +++G G       DV  T
Sbjct: 476 LYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYAQLEASVVGIGVDLAGERDVPQT 535

Query: 537 --------------------------NLYDSINKRRNISLERFIFSLGI----------- 559
                                     NL ++I   R+ +LERF+F+LGI           
Sbjct: 536 WQADLLRAGLPSFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKAL 595

Query: 560 ----------RH-----------VGAEIARSLAKYY------------------------ 574
                     RH           +G E+ARSL  ++                        
Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDTHP 655

Query: 575 --------LSY-----------------QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
                   LS+                 Q  A  +++  A       +L +  +   ++A
Sbjct: 656 PSPKLREALSFASVLDDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVVA 715

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             ++++   P N     A  + +   + R    +   +  ++ + +V TGTL  + R  A
Sbjct: 716 -TLLQWLDRPENAALASAAQQAMETVLARLPEADALQTGPLDGQTVVITGTLAALTRDAA 774

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L  + 
Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLVFLGDHG 830


>gi|294789790|ref|ZP_06755020.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453]
 gi|294482296|gb|EFG29993.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453]
          Length = 798

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 277/813 (34%), Positives = 416/813 (51%), Gaps = 147/813 (18%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L ++++ +   YY    P + DSEYD L R  +A+  A+P       P  P  ++GG + 
Sbjct: 14  LTEKLNRYAHEYYTLDAPSVPDSEYDRLYRELEALEMAYPTFRL---PESPTQRVGGAIL 70

Query: 84  LSLFKVTHSIPTLSLEKIWN-IEDLRKFI-TRIYRFWQK-KDD---NSIFFTLEPKIDGT 137
                V H IP LSL   ++ ++D  KFI T    F ++ + D   + + +T+EPK DG 
Sbjct: 71  REFASVRHKIPMLSLNNAFSPLDDNGKFIHTETLAFDERVRKDLELSKVEYTIEPKFDGL 130

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++ Y+ G F+ AA RGDG +GEDV+  I+ +  IP ++    IP++IEVRGEV + K 
Sbjct: 131 AISLLYQDGIFIQAATRGDGITGEDVTENIKTVRNIPLKLQGQYIPDLIEVRGEVLMLKK 190

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI----FA 251
           DF  LN   IA  +K +ANPRNAA+G LR+LN      R L+FF +G+ + S I      
Sbjct: 191 DFEQLNQRQIAQNQKTFANPRNAAAGSLRQLNSRIAAERKLHFFGYGIAQFSGIQPENAP 250

Query: 252 KGQYEMLQKMRCLGF--PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           K   E L  ++ LGF  P  N    AN    ++  Y  + + RSTLPY+IDG+V KV+  
Sbjct: 251 KTHAEELLWLQDLGFSLPTGNWHICANIAE-VLQQYENLNAKRSTLPYEIDGMVIKVNSL 309

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q++LG  +R+PRW I+HKF  ++A T++  ID+Q+GRTG +TPVARL+PV++GG ++ 
Sbjct: 310 AEQEKLGFVSRAPRWAIAHKFPAEEAMTQVETIDVQVGRTGAITPVARLKPVSVGGVIVI 369

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------- 422
           NATLHN+D +             +DIR+GD V+V+RAG+VIP+VV +++  R        
Sbjct: 370 NATLHNQDEV-----------SRKDIRIGDTVVVRRAGDVIPEVVRVVLEHRPMKIVEIQ 418

Query: 423 -----------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACS 465
                            P+  PF  P  CP+C S + R+     G+ +A  RCTGG+ C 
Sbjct: 419 SNNIQDDLFPTTKTQSVPEFPPFRLPENCPVCGSAIERE----AGEAIA--RCTGGMICK 472

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL--QRRQQTSTTK 523
           AQ+ + L HF SR A +I GLG +Q++    ++D   S    ADI+ L  ++ QQ   +K
Sbjct: 473 AQRSQGLIHFASRKAMDIVGLGDKQIEALV-TQDILHSF---ADIYQLDIEKLQQIKDSK 528

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY--LSYQNFA 581
                        N+   I   R   L RF++SLGIRHVG   A+ LA  +  L+    A
Sbjct: 529 -----SSATKWAENILIGIENSRKPLLSRFLYSLGIRHVGESTAKQLANAFGDLATVRHA 583

Query: 582 QE--------INNIIAHN-------------NDD------------------------WL 596
            E        I +++AH+              DD                        WL
Sbjct: 584 PEPVLACLPDIGSVVAHSIAHYFRQPEQQKLLDDLLRFVEPQHTVLTINICDFAKPARWL 643

Query: 597 SLIRVPLVGDIIAQAIVEF-----------------YQNPRNICAVEALLKEVSPSIGRH 639
           S +    + +  AQ + +                  +Q+ R I    ALL+E+  S+ + 
Sbjct: 644 SRLPSYKLSEKRAQELWDLAGNSVDGLLTDRVLPREWQDWRKIAENAALLREIDESLTKF 703

Query: 640 EK-------------NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           +              ++ SEI  K  V TGTL  ++R  A   +   G  VS  +S+KTD
Sbjct: 704 DSKQNEAYYLPLGTGSLKSEITGKTFVLTGTLPTLKREDAAAMIEAAGGKVSGSVSKKTD 763

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ G+  GSKLEKA  LG+ ++NE++FL + Q
Sbjct: 764 FVVAGEAAGSKLEKALSLGITVLNEDEFLAMFQ 796


>gi|306819948|ref|ZP_07453599.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551984|gb|EFM39924.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 675

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 237/717 (33%), Positives = 405/717 (56%), Gaps = 60/717 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SI++AR ++  L+ EI  ++  YY+   P+I D +YD + R+  ++   +P+L   + P+
Sbjct: 3   SIDEARVKIEELKAEIEKNNKLYYEDDNPVISDYDYDMMMRQLISLEEKYPEL---KTPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P N++GG+      ++ H    +SL   +   +LR F ++I  + +        + +E 
Sbjct: 60  SPSNRVGGKALSKFEQIRHDRVMMSLSNAFTAGELRDFDSKIKEYTKNPK-----YVVEF 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  + ++YEKG  + A  RGDG +GE+V+   + I +IP  L   +   +EVRGE +
Sbjct: 115 KIDGLTLVLKYEKGILISAGTRGDGVTGENVTQNAKTIKSIPLKLKEEVD--VEVRGEAF 172

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL-----GKT 246
           I K  F A+N+  I    K +ANPRN A+G LR+L+P    +R L+ F+  +     GK 
Sbjct: 173 IPKEVFYAINEMQIENDEKTFANPRNMAAGSLRQLDPKITASRKLDIFIFSVENDIEGKN 232

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S       +E+L  ++ LG  ++   +  N    +++   +    R  LP++IDG+V K+
Sbjct: 233 S------HFELLDYVKDLGMKISPEKKLCNDIEEVIAEIEKWTDKRFDLPFEIDGMVVKL 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +L+ ++G  +++P+W I++KF  ++  T++ DI +Q+GRTG+LTP A L+ V I G+
Sbjct: 287 DDIALRDEIGSTSKAPKWAIAYKFPPEKVRTKVEDIIVQVGRTGVLTPTAILDTVRISGS 346

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++ ATLHNEDYIK            +DI++GD V +++AGE+IP+V ++  N R  + +
Sbjct: 347 MVSRATLHNEDYIK-----------EKDIKIGDYVYIQKAGEIIPEVYEVDKNARTGEER 395

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P  CP+C  + VR  N       A+ +CT  ++C AQ   ++ HFVS+ A +I+G 
Sbjct: 396 EFEMPHNCPVCGEKTVRFENE------ASWKCT-NISCKAQLQRKIIHFVSKGAMDIDGF 448

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +   F+       I+  +DI+TL+         ++N+   G+ S  NL ++I   +
Sbjct: 449 GEKIVIQLFEEG----LIKDISDIYTLK------ADVLKNLERMGEKSANNLINAIENSK 498

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           N+SL++FIF+LGIR +GA   + LAK   ++ N  Q + + +         L  +  +G+
Sbjct: 499 NVSLDKFIFALGIRFIGANAGKVLAK---NFDNIGQLMESSVDR-------LTAIDEIGE 548

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +A +IVEF++   N   VE LL      I +   +  S   N K+V TGTL+K +R   
Sbjct: 549 KMAMSIVEFFEIQSNRDLVEKLLALGVNPISKSNSSQKSIFLNLKVVATGTLEKFKRDDI 608

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           Q+ V + G  +S+ +S+KT+ ++ G+  GSKL+KA QLGVK+++E  F  LL   +T
Sbjct: 609 QKIVEENGGKLSSSVSKKTNFVVAGEAAGSKLDKANQLGVKVISENDFEKLLTLDDT 665


>gi|331702040|ref|YP_004398999.1| DNA ligase [Lactobacillus buchneri NRRL B-30929]
 gi|329129383|gb|AEB73936.1| DNA ligase [Lactobacillus buchneri NRRL B-30929]
          Length = 675

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 241/715 (33%), Positives = 398/715 (55%), Gaps = 55/715 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +  E +S +QA  +   L ++++   D YY Y  P + D+ YD   ++  A+ + FP + 
Sbjct: 1   MAFENMSEQQAAAKAGDLRKQLNQWADEYYTYDAPSVEDAVYDQTYQQLVALENQFPQIV 60

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  K+G        KV H IP LSL  +++ E+L +F+ R+     + D  + 
Sbjct: 61  T---PDSPTQKVGDHTLPGFTKVNHEIPMLSLGDVFSKEELAEFVDRL----SENDSVAF 113

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +  E KIDG  I +RYE G FV  + RG+G  GED++  ++ I +IP+ L+   P  IE
Sbjct: 114 DYNCELKIDGLAINLRYENGVFVQGSTRGNGQIGEDITRNLKTIKSIPQKLTR--PINIE 171

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           VRGE Y+ K  F  LN++    G +P+ANPRNAA+G LR+L+P    +R L+ F++ +  
Sbjct: 172 VRGECYMPKESFAKLNEQRQLDGEEPFANPRNAAAGSLRQLDPRVTRSRKLSTFMYNVAD 231

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             ++ +  Q  ML +++ LGF +N   + A+    I +Y ++ K +R  LPY IDG+V K
Sbjct: 232 IDDLQSDTQSGMLAELKELGFTINPDFKVAHNMADIDNYVDKYKDLRDGLPYGIDGIVIK 291

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+   LQ+ LG   + PRW I++KF  ++  T + DI+  +GRTG++TP A ++PV + G
Sbjct: 292 VNSLPLQRSLGATVKVPRWAIAYKFPPEEVQTIVRDIEWTVGRTGVVTPTAVMDPVTLAG 351

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + ++ A+LHN DY+             +DIRVGD V + +AG++IP++   + ++R  ++
Sbjct: 352 STVSRASLHNPDYL-----------AEKDIRVGDTVKLHKAGDIIPEISQYLPDKRPANS 400

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           Q +  P+ CP C S +V  L+ +      A RC     C AQ  E L HF SRDA NI+G
Sbjct: 401 QAYEIPTQCPSCGSTLVH-LDQEV-----ALRCINP-QCPAQLKEGLTHFASRDAMNIDG 453

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + +   F+       +   A ++ L   Q  +  K      FG+ S T L  +I+  
Sbjct: 454 LGPKIIAQLFEKH----MVSDVAGLYDLSFDQLLTLDK------FGEKSATKLLAAIDNS 503

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R+ S ER ++ LGIRHVG + AR +A+ +       + I+ ++  +  D   +  +  +G
Sbjct: 504 RSNSCERLLYGLGIRHVGIKAARLIAQRF-------KNIDKVMQASAQD---IAEIATMG 553

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVS---SEIENKKLVFTGTLQ 659
            IIA ++V ++  P +   ++  LK+V  +   +G  ++ ++   S    KK V TG LQ
Sbjct: 554 MIIADSVVTYFSMPESKQLIDQ-LKQVGVNMDYLGVTDEQLAESDSFFTGKKFVLTGKLQ 612

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            I R  A +++   GA VS+ +S+ TDI++VG++PGSK +KA+ LG++  +E +F
Sbjct: 613 NITRPDATQWLEDHGAKVSSSVSKNTDIVVVGEDPGSKYDKAKSLGIQTWDEARF 667


>gi|227523032|ref|ZP_03953081.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290]
 gi|227089850|gb|EEI25162.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290]
          Length = 675

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 249/717 (34%), Positives = 386/717 (53%), Gaps = 59/717 (8%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +  E ++ +QA      L ++++   D YY Y  P + DS YD   ++   +   FP + 
Sbjct: 1   MAFEDMTEQQAESAARELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV 60

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  K+G        KV H IP LSL  +++IE+L+ F  R+       D  S+
Sbjct: 61  T---PDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADRL------SDSESV 111

Query: 127 FF--TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            F    E KIDG  I++RYE G  V  A RG+G  GED++  ++ I +IP+ LS   P  
Sbjct: 112 PFEYNCELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIPQRLSR--PIN 169

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           IEVRGE Y+ K  F+ LN +    G  P+ANPRNAA+G LR+L+      R L+ F++ +
Sbjct: 170 IEVRGECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNV 229

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               ++ +  Q  ML++++ LGF +N+  + A+    I  Y       R TL Y IDG+V
Sbjct: 230 ANYDDLESDTQSGMLEELKKLGFTINSDYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIV 289

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+   LQ+ LG   + PRW I++KF  ++A T + DI+  +GRTG++TP A ++ V +
Sbjct: 290 IKVNSLPLQRSLGATVKVPRWAIAYKFPPEEAETTVRDIEWTVGRTGVVTPTAVMDEVTL 349

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A+LHN DY++            +DIR+GD V + +AG++IP++   + ++R  
Sbjct: 350 AGTTVSRASLHNPDYLQ-----------EKDIRIGDTVRLHKAGDIIPEISTYVKDKRQV 398

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+QP+  P+ CP C S +V  L+ +      A RC     C AQ  E L HF SRDA NI
Sbjct: 399 DSQPYEIPTECPSCGSELVH-LDEE-----VALRCINP-QCPAQLKEGLTHFASRDAMNI 451

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG + +   FK       +   A ++ L   Q  +  K      FG+ S  NL  +I+
Sbjct: 452 DGLGPKIIGQLFKKH----MLTDVAGLYGLTFDQLMTLDK------FGEKSAGNLLAAID 501

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             RN S ER +F LGIRHVGA+ AR +A+ + +           IA           +  
Sbjct: 502 NSRNNSCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDATAQEIAE----------IDT 551

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHE---KNVSSEIENKKLVFTGT 657
           +G IIA ++V ++  P++   + + LK+V  +   +G  +   K   S    K+LV TG 
Sbjct: 552 MGMIIADSVVTYFSMPQSKELI-SQLKQVGVNMDYLGATDEALKESDSVFNGKRLVLTGK 610

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           LQ I R +A  ++   GA VS  +S+KTDI++VG++PGSK +KA+ LG+ + +E +F
Sbjct: 611 LQHITRPEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIDVWDENRF 667


>gi|313903518|ref|ZP_07836909.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965]
 gi|313466339|gb|EFR61862.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965]
          Length = 817

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/614 (38%), Positives = 347/614 (56%), Gaps = 51/614 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E AR  + +L ++I +HD  YY   +P I D+ YDAL R+   +   FP+L     P+ 
Sbjct: 54  LEAARARVEALREQIRHHDYLYYVLDRPEIDDAAYDALMRQLRELEQRFPELV---TPDS 110

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG       +V H+ P LSL+  ++ E+L  F  R+ R     DD  + +  E K
Sbjct: 111 PTQRVGGRPAAPFARVEHAEPMLSLDNAFSREELEAFDQRVRR--AVGDD--VAYVAELK 166

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGE 190
           IDG  I + YE G+FV  A RGDG +GEDV+A +R I ++P   R     +P  +E+RGE
Sbjct: 167 IDGLSIALTYEGGRFVRGATRGDGEAGEDVTANLRTIRSLPLRLRDRERPVPRRVEIRGE 226

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTS 247
           VY++ + F  LN E  A G  P+ANPRNAA+G +R+L+P    +R LN +V+ L   +  
Sbjct: 227 VYMTFDAFRRLNQEQEARGLAPFANPRNAAAGSVRQLDPAVTASRSLNLWVYALAGWEGD 286

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E   + Q+E+LQ +R  G PVN   R+      + +Y +E    R  LPY  DG+V KVD
Sbjct: 287 EPAPRSQWEVLQTLRAWGLPVNPHARRCTGLDELFAYIDEWAERRHQLPYLTDGIVIKVD 346

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q+QLG  ARSPRW I++KF  ++A TR+ DI + +GRTG LTPVA L+PV + G  
Sbjct: 347 DLEQQRQLGATARSPRWAIAYKFPAEKARTRVRDILVSVGRTGALTPVAVLDPVLLAGTT 406

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LHN DYI+            +D+R+GD V+V +AGE+IP+VV+++   R    +P
Sbjct: 407 VSRASLHNADYIR-----------EKDVRIGDLVVVHKAGEIIPEVVEVVKEARTGAERP 455

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           FS P  CP C S VVR      G+  AA RC    AC AQQLER++HF SRDA +IEGLG
Sbjct: 456 FSMPERCPACGSPVVR----VEGE--AATRCPNA-ACPAQQLERIRHFASRDAMDIEGLG 508

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              ++           +R  AD++ L+         +  +   G  S  NL  +I+  R 
Sbjct: 509 PAIIEQLVGR----GLVRDVADLYHLE------PEPLAQLERMGPKSAANLVAAIDASRG 558

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R ++ LGIR VG  +A  LA+++ +       I  ++A   D+   L+ VP +G  
Sbjct: 559 RPLRRLLYGLGIRFVGERVAGLLARHFGT-------IQRLMAAGPDE---LMAVPEIGPR 608

Query: 608 IAQAIVEFYQNPRN 621
           IA+++V F+++  N
Sbjct: 609 IAESVVIFFRDEHN 622



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
            V   +  K  VFTG L  + R +AQE V  LG   +  +SRKTD ++ G+  GSKL +A
Sbjct: 734 EVRERVAGKTFVFTGGLASMTRDEAQELVEALGGRATGSVSRKTDYVVAGEGAGSKLARA 793

Query: 702 QQLGVKIMNEEQFLFLL 718
           ++LG+ +++E  FL L+
Sbjct: 794 RELGIPVLDEAAFLRLV 810


>gi|270307958|ref|YP_003330016.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS]
 gi|270153850|gb|ACZ61688.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS]
          Length = 680

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/718 (34%), Positives = 377/718 (52%), Gaps = 65/718 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L +EI+ H+  YY    P I DSEYDAL RR   +  A P+L     PN P  ++G
Sbjct: 10  EIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELV---TPNSPTQRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTM 138
            E   +   V H  P LSL   ++  +L  +  R+ +       N+ F    EPK+DG  
Sbjct: 67  AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYLRVKKLL----GNAAFQIDCEPKMDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y  GKF   A RGDG  GE+++  +R I +IP     + P + E+RGEVY+ K  F
Sbjct: 123 VALTYRNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVYLPKEGF 182

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYE 256
             LN E    G   +ANPRNAA+G LR+L+P     R L+ F++ LG   + +     ++
Sbjct: 183 AKLNCERADKGLSLFANPRNAAAGSLRQLDPLVTAERPLDIFIYALGYAEDSLLPDSHWQ 242

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+    LGF +N   R  NT      YY EM   R +LPY+ DG+V+KVD  SLQK+LG
Sbjct: 243 ILEYFSRLGFRINPRNRLVNTLAEAKEYYREMTENRDSLPYEADGVVFKVDSVSLQKKLG 302

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           +  R PRW I++KF  +Q +T L  I I +GRTG L P A LEPVN+GG ++  A+LHNE
Sbjct: 303 DAGREPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLHNE 362

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF------ 430
           D          ++R  +DIR GD V+++RAGEVIP+VV  ++ +R P+++PFS       
Sbjct: 363 D---------DILR--KDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETLFN 411

Query: 431 PSF----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P      CP+C   + R          A H C   ++C AQ   +L+HFVSR A +I G+
Sbjct: 412 PKLSRPACPVCGGEIYRPAGE------AMHYC-ANVSCPAQFERQLEHFVSRGAMDIRGI 464

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + L      E    ++   +D++ L      +   +  +   G+ S  N+  +I+  +
Sbjct: 465 G-ESLSVILAQEGLVKNV---SDLYYL------TAADLLKLPRMGEKSADNIIKAISDSK 514

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  L+R IF LGIRHVG E A  L+  Y           +I A        L  +P +G 
Sbjct: 515 SRPLDRVIFGLGIRHVGNETAALLSSRY----------GDIWALAGAGLDKLQTIPDIGA 564

Query: 607 IIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            IA +I  ++   +NI  +  L    +K  S     H+    S +E    V TG L+ + 
Sbjct: 565 KIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSHKSLPLSGVE---FVVTGKLESLS 621

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R + Q+ +  LG      +++ T  ++VG + GSKL KA+ +GVK ++E++ + +L+Q
Sbjct: 622 REETQQKIRSLGGTAKDNVTKATRYLVVGADAGSKLAKARSMGVKELSEQELINMLEQ 679


>gi|91204173|emb|CAJ71826.1| strongly similar to DNA ligase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 674

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/713 (35%), Positives = 391/713 (54%), Gaps = 57/713 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L   I YHD  YY  + P I D EYD L R    +  A P+L     P+ P  +
Sbjct: 6   KEKIEQLRCIIRYHDYKYYVENNPEISDYEYDQLLRELQNLESAHPELI---TPDSPTQR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +  +       V H  P LS++  ++ E+L++F  RI R      + +I + +E KIDG 
Sbjct: 63  VADQPISQFPTVEHKKPMLSIDNTYSNEELKEFDQRIKRMAGIDANTNIEYVVELKIDGI 122

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEVY 192
            IT+ YE G FV  A RGDG  G+DV+A ++ I  IP  LS++     IP ++E+RGE+Y
Sbjct: 123 AITLWYENGLFVRGATRGDGFRGDDVTANLKTIRQIPLKLSVSGAHYKIPPVVEIRGEIY 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           +   +F  +N+E    G   +ANPRNAA+G L+ L+P     R L  F + +G    +  
Sbjct: 183 LPNKEFQRINEEREEKGEIQFANPRNAAAGSLKLLDPRITAKRRLKMFAYVIGYVEGMEL 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +   + L  ++ +G PVN+  +       +V Y NE    R  L Y +DG+V KV+  +L
Sbjct: 243 ESHVQCLDFIKAIGLPVNSYAQLCKNIDEVVRYCNEWDKRRGILDYMVDGMVIKVNSLAL 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  +++PRWMIS KF  +QA TR+ +I +Q+G+TG LTPVA L PV + G  ++ A
Sbjct: 303 QEQLGATSKAPRWMISFKFQPEQAITRIEEIVVQVGKTGTLTPVANLAPVLLAGTTVSRA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN D +K            +D+RVGD V+V++AGE+IP+VV ++  +R    + F  P
Sbjct: 363 SLHNFDEVK-----------RKDVRVGDYVVVQKAGEIIPQVVKVLEEKRSGREKVFVEP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C+  V RD +          RC   L C AQ   R+++F  RDA +IEGLG   +
Sbjct: 412 ACCPVCKGPVHRDNSE------VYLRCHNPL-CKAQTKRRIQYFAGRDAMDIEGLGPAII 464

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +      D    +   +DIF+LQ         + N+   G  S +NL  +I   R   L+
Sbjct: 465 EQLV---DKGL-VDDYSDIFSLQ------YDDLVNLERMGKKSSSNLISAIENSRGRDLD 514

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I +LGI +VG   A  L++++ S       +  ++    D+   L ++  +G ++AQ+
Sbjct: 515 RLICALGIHNVGLHTAEVLSEHFDS-------LGKLLNATADE---LKKIHEIGPVVAQS 564

Query: 612 IVEFYQNPRNICAVEALL------KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           IVEF+QN      ++ L+      ++++  I R     SS++  K  V TG LQK  R  
Sbjct: 565 IVEFFQNKHTREIIKKLVAKGVNTEKLTSDIPRK----SSKVAGKSFVITGKLQKYSRSD 620

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A++ + +LG  VS+ +S KT+ +I G++PGSKL KA++LGV I++EE F  L+
Sbjct: 621 AEKLIKRLGGRVSSAVSGKTNYLIAGEDPGSKLGKAKELGVVILDEEAFDLLV 673


>gi|225025741|ref|ZP_03714933.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
           23834]
 gi|224941522|gb|EEG22731.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
           23834]
          Length = 778

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 274/806 (33%), Positives = 409/806 (50%), Gaps = 139/806 (17%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L Q ++ +   YY    P + D+EYD L R  +A+    P       P  P  +
Sbjct: 5   QQRIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELEALEAEHPQF---RLPESPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIED-------LRKFITRIYRFWQKKDDNSIFFTL 130
           +GG +      V H++P LSL   ++  D         +F+    R  ++     + +  
Sbjct: 62  VGGAVLDGFETVVHAVPMLSLNNAFSPRDDETGAFDHAEFLAFDERVCKELGVAQVEYAA 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           EPK DG  +++ Y+ G  V AA RGDG +GE+V+  I+ +  IP R+     P ++EVRG
Sbjct: 122 EPKFDGLAVSLLYQNGILVQAATRGDGTTGENVTENIKTVRNIPLRLHGEKQPALLEVRG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247
           EV + K DF ALN   +  G+KP+ANPRNAA+G LR+L+ + IT  R L+FF +G+ + S
Sbjct: 182 EVLMLKADFAALNQRQLEAGQKPFANPRNAAAGSLRQLD-SKITAQRKLHFFAYGIAQLS 240

Query: 248 --EIFAKGQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             E   +   E L  +  +GF +  G   A T    ++  Y  +   R  LPY+IDG+V 
Sbjct: 241 GVERLPESHMEELALLHEIGFSLPKGYFGAYTGAAAVLREYERLAEHRPRLPYEIDGMVV 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q+QLG  +R+PRW I+HKF  ++A T +  ID+Q+GRTG +TPVARL PV +G
Sbjct: 301 KVNSLAEQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGAVTPVARLAPVFVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER--- 421
           G  +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +++  R   
Sbjct: 361 GVTVTNATLHNQD---------EVAR--KDVRVGDTVVVRRAGDVIPEVVRVLLERRPMQ 409

Query: 422 ---------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
                     P  +PF  P  CP+C S V R+     G+ VA  RCTGG+ C AQ+ + L
Sbjct: 410 PVDLLGEQMEPLHEPFRLPETCPVCGSAVERE----AGEAVA--RCTGGMLCQAQRAQGL 463

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532
            HF SR A +I GLG +Q++    ++     +   ADI+ L         K++ I   G 
Sbjct: 464 IHFASRKAMDIAGLGDKQIEALVAAD----VLHSFADIYRL------DIAKLQTIKD-GK 512

Query: 533 VSVT----NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ------ 582
            + T    N+ DSI + R   L RF+F+LGIRHVG   A+ LA  + +     +      
Sbjct: 513 SAATKWAQNILDSIAQSRTPPLARFLFALGIRHVGESTAKQLAAAFGNLDTVRRAPEPIL 572

Query: 583 ----EINNIIAHN-------------NDDWLS----------------------LIRVP- 602
               +I +++AH               DD L                       L R+P 
Sbjct: 573 ACLPDIGSVVAHAIAHYFRQPAQQKMLDDLLQHVAPQAAAPSPQTRANAAPEQWLQRLPN 632

Query: 603 -------------LVGDIIA----QAIVEFYQNPRNICAVEALLKEVSP----------- 634
                        L G + A    QA+ + +QN R   A  ALL+E++            
Sbjct: 633 IKLSEKRAAELWQLAGSLHALQTDQALPQEWQNWRRQPAHAALLQEITAFTEALPESSTD 692

Query: 635 --SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
             S   H +N    I  K  V TGTL  ++R +A   +   G  VS  +S+KTD ++ G+
Sbjct: 693 NVSGSLHPEN--HPIAGKTFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFVVAGE 750

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLL 718
             GSKLEKAQ LGV +++EE+ L +L
Sbjct: 751 AAGSKLEKAQALGVAVLSEEELLGML 776


>gi|126659779|ref|ZP_01730906.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110]
 gi|126618931|gb|EAZ89673.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110]
          Length = 677

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 245/718 (34%), Positives = 389/718 (54%), Gaps = 52/718 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L +EQ    ++ L Q++   +  YY    PI+ D+ YD L R  D +    P L   
Sbjct: 3   VENLGVEQ---RVTQLRQQLQKANYAYYVLDDPIMEDAVYDQLYRELDNLEKEHPQLIT- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  ++G +       VTH+IP  SLE  +N+++L+ +  R  R+ +K+D ++I +
Sbjct: 59  --PDSPTQRVGDKPASQFVSVTHNIPLYSLENAFNLDELKAWKNRWQRYSEKEDLDTIEY 116

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEV 187
             E KIDG+ + + YE G  +    RGDG +GED++  IR I +IP  L+L N P +IEV
Sbjct: 117 VCELKIDGSALALTYENGLLIRGVTRGDGTTGEDITQNIRTIRSIPLKLNLDNPPPMIEV 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246
           RGE ++  ++F  +N E    G   +ANPRNAA+G LR+L+P  +  R L FF + L   
Sbjct: 177 RGEAFLPLDEFDRINQEREEKGEALFANPRNAAAGTLRQLDPKIVDQRRLQFFAYTL-HL 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E     Q++ L  ++  GF VN   +   +   +  Y+ + ++ R  LPY  DG+V K+
Sbjct: 236 EETEISSQWQSLNYLQNSGFLVNPHRKLCQSLDEVADYFKQWETARKDLPYMTDGVVVKI 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +++SLQK LG   + PRW I+ K+  ++A T + DI + +GRTG +TP+A ++PV++ G 
Sbjct: 296 NDYSLQKALGFTQKFPRWAIALKYPAEEAPTIVKDIIVNVGRTGAVTPMAVMKPVHLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I  L           DIRVGD V++++AGE+IP+VV ++   R PD Q
Sbjct: 356 TVQKATLHNSDRISQL-----------DIRVGDTVIIRKAGEIIPEVVRVLKELRPPDTQ 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+  P  CP C S ++R   P+   L    RC   L+C+A     L H+ SRDA +I GL
Sbjct: 405 PYEMPDRCPECNSLLIRP--PEEAVL----RCM-NLSCNAILKGSLVHWSSRDALDIRGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +     +E     +   AD++ L      +  KI N+   G  S  NL  +I   +
Sbjct: 458 GERIVVLLIDNE----LVNSIADLYYL------TPEKIANLERMGSKSADNLIKAIEGSK 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                R ++ LGIR+VG+  A  L + +LS    +Q            + SL  V  VG 
Sbjct: 508 QQPFSRVLYGLGIRYVGSVTANLLTENFLSIDQLSQA----------SFTSLCSVYGVGG 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            IAQ+I++++   +N   ++ L K     E++ S     ++  + +  K  V TGTL  +
Sbjct: 558 EIAQSIIDWFSIQKNYDLIQQLKKVGLQLEITSSEKNTVESSLTPLSGKTFVITGTLPTL 617

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R +A+  + + G  V+  +S+KTD +++G+N GSKL KAQ+LG+  ++E   L  LQ
Sbjct: 618 NRTEAKTLIEKAGGKVTGSISKKTDYLLLGENAGSKLIKAQELGITQLSEADLLAFLQ 675


>gi|289663144|ref|ZP_06484725.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 833

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 261/836 (31%), Positives = 416/836 (49%), Gaps = 169/836 (20%)

Query: 32  DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           +D  Y+Y    +P + D +YD L R  +A+   +P LA ++ P     ++G        +
Sbjct: 19  EDANYRYHVLDEPQMADVDYDRLMRELEALEAEYPQLASADSPT---QRVGHLAASRFAE 75

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H++P LSL   +N E++ +F+ RI    ++ +     F+ EPK+DG  I++RYE G+F
Sbjct: 76  VRHALPMLSLGNAFNDEEVTEFVRRIS---ERLEVKQPLFSAEPKLDGLAISLRYENGEF 132

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V  A RGDG +GEDVSA +R +  IP R+     P+++EVRGEVY+ +  F + N +M A
Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRAAFESYNAQMRA 192

Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265
            G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE +  +    +L ++R  G
Sbjct: 193 QGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGVLPQTHSAILAQLRAWG 252

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           FPV++ V       G+++YY  + + R  L +DIDG+VYK+D+ + Q+++G  +R+PRW 
Sbjct: 253 FPVSSLVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN D I  LD  
Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ CP+C S +VR+ 
Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVRE- 420

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ---------------- 489
               G+  A  RC+G L C AQ+ E  +HFVSR A +++GLG++                
Sbjct: 421 ---EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVQGVAD 475

Query: 490 ----------QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE---NILGFGDVSVT 536
                     QL     +E P   +R   +        Q  TT +    ++ G  +V  T
Sbjct: 476 IYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQLETTVVGIGVDMAGEREVPPT 535

Query: 537 --------------------------NLYDSINKRRNISLERFIFSLGI----------- 559
                                     NL ++I   R+ +LERF+F+LGI           
Sbjct: 536 WQADLLRAGLPKFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKAL 595

Query: 560 ----------RH-----------VGAEIARSLAKYYLSYQNFAQEINNII---------- 588
                     RH           +G E+AR+L  ++L      Q I++++          
Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARALG-HFLDQPGNQQAIDDLLQRGVRIGDTH 654

Query: 589 --------AHNNDDWLSLIRVPLVGDIIAQ------------------------------ 610
                   A +    L  + +P V  + AQ                              
Sbjct: 655 PPSPKLREALSFASVLEDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVV 714

Query: 611 -AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            A++++   P N     A  + +   + R    +   +  ++ + +V TGTL  + R  A
Sbjct: 715 AALLQWLDRPENAALASAAQQAMETVLARLPEADALQTGPLDGQSVVITGTLAALTRDAA 774

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV I +E + L  L ++ 
Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVDIWDEARLLAFLSEHG 830


>gi|284166901|ref|YP_003405180.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511]
 gi|284016556|gb|ADB62507.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511]
          Length = 692

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/722 (34%), Positives = 381/722 (52%), Gaps = 52/722 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+  LS ++AR+++  L + I  HD  YY  S P+I D  YDAL  R   +  AF   
Sbjct: 20  FAPVGELSEDEAREQVELLREAIREHDRRYYVESDPVIADRTYDALFARLRDLEDAF--- 76

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              E P+ P   +GGE       V H  P LS+++     D+R+F  R+ R     D   
Sbjct: 77  -GLEHPDSPTRSVGGEPLEEFETVEHVAPMLSIDQSGEEADVREFADRVQREVGDVD--- 132

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
             +  EPK DG  +   YE G+   AA RGDG  G+DV+   R I ++P+ L  + PE +
Sbjct: 133 --YVCEPKFDGVSMEFVYEDGRLERAATRGDGREGDDVTRNARTIGSVPQKLHGDYPEFL 190

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
            VRGEVY+ K+ F A N E I  G +P+ANPRNA +G +R+L+P+ +  R L  F   + 
Sbjct: 191 AVRGEVYMPKDAFQAHNRERIERGEEPFANPRNATAGTIRQLDPSIVADRPLEVFFFDVL 250

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++      E L++    G  V + V  A+     ++Y + M   R  L Y+IDG V 
Sbjct: 251 EASDLEDSHSAE-LERFPDWGLRVTDHVELADDIDEAIAYRDRMLEARDDLNYEIDGTVI 309

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+   +++LG  AR  R+  ++KF  +   T ++D+ +Q+GRTG LTPVA LEPV++G
Sbjct: 310 KVDDRESREELGRTARHDRYAFAYKFPARAEVTPIVDVAVQVGRTGRLTPVALLEPVDVG 369

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+LHN D I+            +++ VGD V V+RAG+VIP V +++  E+  +
Sbjct: 370 GVTVSRASLHNPDEIE-----------EKNVNVGDTVRVQRAGDVIPYVEEVV--EKDSE 416

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              +  P  CP+C S V RD     G +     CTGGLAC AQ    ++++   D  ++E
Sbjct: 417 GH-YDLPDRCPVCDSAVERD-----GPMAF---CTGGLACDAQLRRSIEYYAGDDGLDLE 467

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +         A  +   AD++ L R   T      ++ G+G+ S  N+   I  
Sbjct: 468 GLGEKSVRQLVD----AGLLESVADLYELDREDLT------DLEGWGETSAENVLAEIEA 517

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R   L  F+ +LGI HVG   AR LA+ + +++ F +          D+   L  VP V
Sbjct: 518 SREPPLAEFLSALGIPHVGPTTARELAREFGTFEAFREAA-------EDEPERLEDVPDV 570

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+ +A+ + EF+ +  N  AV+ LL+ VSP     E     E+E    VFTG+L+ + R 
Sbjct: 571 GETVAEQLHEFFTSEANAAAVDDLLEHVSPQESDLETG-GDELEGLTFVFTGSLEGMTRG 629

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +AQE V   GA  +  +S  TD ++VG+NPG +K + A    V I++E++F  LL  Y  
Sbjct: 630 EAQEAVEAHGANATGSVSGNTDYLVVGENPGQTKRDDAAANDVPIIDEDEFRELLAGYGI 689

Query: 724 TL 725
            L
Sbjct: 690 DL 691


>gi|163789388|ref|ZP_02183827.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7]
 gi|159875242|gb|EDP69307.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7]
          Length = 673

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 254/723 (35%), Positives = 386/723 (53%), Gaps = 76/723 (10%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S +Q   +L +L  + SY    YY    P I D++YD L     A+   FPDL  ++ P 
Sbjct: 8   SAKQRVFDLRTLLDKYSYE---YYVKDTPSIPDADYDKLYHELVALEEEFPDLISNDSPT 64

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GG +     KV H +P LSL   +N  DL  F  RI    +K  D    +  E 
Sbjct: 65  ---QRVGGTILPGFEKVVHEVPMLSLGNAFNEGDLLDFDRRI----KKLTDKPFSYICEL 117

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  ++++YEKGK V AA RGDG  GE+V+  IR + ++P  L L     IEVRGE Y
Sbjct: 118 KIDGLAVSLKYEKGKLVRAATRGDGTVGENVTQNIRTVKSVP--LRLKNAYSIEVRGECY 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K+ F+ LN +    G   +ANPRNAA+G LR L+  +   R LN F++ +G   E+ A
Sbjct: 176 MPKDSFIKLNQDREENGEAIFANPRNAAAGGLRNLDTKETAKRNLNTFLYTVGDFGELTA 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q + L ++  LG   N   R   T   + +Y  E +  R+ LPY+IDG+V KV+EF +
Sbjct: 236 ISQEDALHQLDELGLRTNQDRRVFQTIEEVWAYTQEFQEKRTALPYEIDGIVIKVNEFDV 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK++G   ++PRW I++KF  ++A T + DI+  +GRTG++TP A ++PV + G  +  A
Sbjct: 296 QKEVGFTVKAPRWAIAYKFPAEEAHTVIRDIEWSVGRTGVVTPTAIMDPVQLAGTTVQRA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I             RDIR+ D V+V +AG++IP+V  ++++ER  ++QP+  P
Sbjct: 356 SLHNEDLIH-----------ERDIRLLDTVVVHKAGDIIPEVTRVVLDERPEESQPYLIP 404

Query: 432 SFCPICQSRVV--------RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           + CP C S ++        R +NPK               C AQ  E L HFVSR+A NI
Sbjct: 405 THCPACDSELIHLEEEVALRCMNPK---------------CPAQITEGLSHFVSRNAMNI 449

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG + L   F+ E     +   AD++TL   Q  +  KI+      + S  NL  +I+
Sbjct: 450 DGLGIKVLLQMFEKE----MVHDVADLYTLTFNQLVTLDKIK------EKSANNLLTAID 499

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-------EINNIIAHNNDDWL 596
             R+ SLER +F LGIRHVGA+ A+ +A+ + + +   Q        I  I     D  +
Sbjct: 500 ASRSNSLERLLFGLGIRHVGAKAAKLIAERFETIEAVQQAEKEAIIAIEGIGEIIADSVV 559

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
           +   +P V ++I     E   +  N+  +    +EV+         V S    K +V TG
Sbjct: 560 AYFSLPEVTELIQ----ELKNSQVNMTYLGKKKEEVA--------TVDSYFNGKTIVLTG 607

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L    R +A+E +  LG  V+  +S+KTD+++ G+  GSKL+KA+ L + + +E+Q L 
Sbjct: 608 KLTHFTREEAKERIENLGGNVTGSVSKKTDLVVAGEEAGSKLDKAESLNILVWDEDQLLK 667

Query: 717 LLQ 719
            L+
Sbjct: 668 ALE 670


>gi|325915467|ref|ZP_08177781.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937]
 gi|325538349|gb|EGD10031.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937]
          Length = 833

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 266/836 (31%), Positives = 415/836 (49%), Gaps = 169/836 (20%)

Query: 32  DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           +D  Y+Y    +P + D +YD L R  +A+    P LA ++ P     ++G        +
Sbjct: 19  EDANYRYHVLDEPQMADVDYDRLMRELEALEAEHPALATADSPT---QRVGHLAASRFAE 75

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H++P LSL   ++ E++ +F+ RI    ++ +     F+ EPK+DG  I++RYE G+F
Sbjct: 76  VRHALPMLSLGNAFSDEEVSEFVRRIS---ERLEVKQPVFSAEPKLDGLAISLRYEDGEF 132

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V  A RGDG +GEDVSA +R +  IP R+     P+++EVRGEVY+ +  F A N  M A
Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGQGWPKVLEVRGEVYMPRAAFEAYNAHMRA 192

Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265
            G K  ANPRN A+G LR+L+      R L+FF +G+G+       +    +L ++R  G
Sbjct: 193 QGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVGNGALPQTHSAILAQLRDWG 252

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           FPV+  V       G+++YY  + + R  L +DIDG+VYK+D+ + Q+++G  +R+PRW 
Sbjct: 253 FPVSQLVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN D I  LD  
Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ CP+C S +VR+ 
Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAGVVADQRQPGTQEWRMPTHCPVCGSEIVRE- 420

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------D 492
               G+  A  RC+G L C AQ+ E  +HFVSR A +++GLG++ +             D
Sbjct: 421 ---EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVQGVAD 475

Query: 493 FFFKSEDPAFSIRI--PAD---IFTLQRRQQTST-------------------------T 522
            +  + D    +R+   AD    F  + R+  +T                         T
Sbjct: 476 LYLLTVDQLLQLRLISTADSPHAFLREAREHLATGAYAQLEATMMRIGVDLAGEHEAPQT 535

Query: 523 KIENILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHV-------- 562
              ++L  G  S              NL ++I   RN +LERF+F+LGI HV        
Sbjct: 536 WQADLLRAGLPSFDWNRRKIATKWAENLIEAIETSRNTTLERFLFALGIEHVGESTAKAL 595

Query: 563 ------------------------GAEIARSLAKYYLSYQNFAQEINNII--------AH 590
                                   G E+ARSL  ++    N  Q I++++        AH
Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQPGN-QQAIDDLLQRGVRIGDAH 654

Query: 591 NND----DWLSLIRV------PLVGDIIAQ------------------------------ 610
                  D LS   V      P V  + AQ                              
Sbjct: 655 PPSPKLRDALSFASVLEDMDIPKVTPVRAQQLAAAVPSFDALRDAGSDALLQAGVPAPVV 714

Query: 611 -AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            A++++   P N     +  + +   + R    E   +  ++ + +V TGTL  + R  A
Sbjct: 715 AALLQWLDRPENAALATSAQRAMETVLARLPEAEAVQAGPLDGQTVVITGTLTALTRDAA 774

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L ++ 
Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLAEHG 830


>gi|297544111|ref|YP_003676413.1| NAD-dependent DNA ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841886|gb|ADH60402.1| DNA ligase, NAD-dependent [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 662

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 243/706 (34%), Positives = 395/706 (55%), Gaps = 49/706 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+L   + P+ P  +
Sbjct: 4   KERIKELREKINYHNYKYYVLDQPEISDYEYDMLMRELIELEEKYPEL---KTPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +L+ F  R+     ++    + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHIVPMLSLANAFSEGELKDFDRRV-----REAVGDVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G F   + RGDG +GE+V+  ++ I +IP  L  N+  +  VRGEV++ +  
Sbjct: 116 SVELIYENGIFTVGSTRGDGITGENVTPNLKTIKSIPLRLKDNVSLV--VRGEVFMPRAS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L +      K   E
Sbjct: 174 FERLNTEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQRVEGRKFKTHVE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++  GF V    ++ +    ++    E+++++  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLEFLKEQGFKVIPIHKKCSNIDEVIREIEEIRNLKDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKEPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V++++AGE+IP+VV++I  ER    + F  P  CP+
Sbjct: 354 DYIK-----------EKDIRIGDTVIIQKAGEIIPEVVEVIKEERTGQEREFVMPDRCPV 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR      G+  A  RCT  + C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVR----LPGE--AVRRCT-SVNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      I   AD++ L+        ++      GD SV NL ++I + +   L+R +F 
Sbjct: 456 N----GLIHNIADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++       + I++I+    +D+  L   P VG  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHF-------KTIDDIMKAKFEDFTKL---PDVGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +N+  +E L K         ++ VSS  E K  V TG L    R +A   + + G  
Sbjct: 556 AEKQNVETIEKLKKAGVNMKKLSKEKVSSIFEGKTFVLTGALGNYTREEATRIIEERGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           V+  +S+KTD ++VG +PGSKL+KAQ+LG++I++E+QF  +L+  N
Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIEIIDEKQFEEMLKGEN 661


>gi|256847801|ref|ZP_05553246.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN]
 gi|256715490|gb|EEU30466.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN]
          Length = 674

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 242/717 (33%), Positives = 406/717 (56%), Gaps = 50/717 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E +++ +A+KE+  L Q++      YY+   P + D  YD   +R   +   FP+L    
Sbjct: 4   EQITLAEAKKEIGPLRQQLIQWGKEYYEQDNPSVEDYVYDRQYQRLVELEARFPELVT-- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG+ +  L KVTH IP LS+  ++++E+L  F  R  +     D   I + 
Sbjct: 62  -PDSPTQRVGGQTDTQLAKVTHDIPMLSMGDVFSVEELHAFNER--QQSNLLDTAPIEYD 118

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           LE KIDG  +++ YE G+ + A+ RG+G  GED++A    I  IP    L  P  +E RG
Sbjct: 119 LELKIDGLSLSLVYENGRLIQASTRGNGVIGEDITANAMTIKDIPH--QLPEPLSLEFRG 176

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248
           E Y+ K  F+ LN E  A G+  +ANPRNAA+G LR+L+P     R L  F++ + +  +
Sbjct: 177 ECYMPKESFVKLNAEREANGQPVFANPRNAAAGSLRQLDPQVTARRNLATFMYYVPEYEK 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +    Q E LQ+MR LGF VN   +  ++   +  Y  E  + R  L Y IDG+V KV++
Sbjct: 237 LGVTTQEEALQRMRDLGFNVNPHNQTVHSEKELAEYIGEYTAQRDQLAYGIDGIVEKVND 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ +LG   + PRW I++KF  ++ +T + +I   +GRTG +TP A ++PV + G  +
Sbjct: 297 LHLQTKLGNTVKVPRWEIAYKFPPEEQATVVREIVWTVGRTGNVTPTAVMDPVQLAGTTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            +DIR+GD VL+ +AG++IP++  +I+ +R  +++ +
Sbjct: 357 SRASLHNPDYLR-----------EKDIRLGDTVLLHKAGDIIPEISRVIIEKRPVNSEEY 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C+S++V       G++  A RC   + C AQ  E L HF SR+A NI+GLG 
Sbjct: 406 QIPTQCPVCESKLVH----LDGEV--ALRCVNPM-CPAQIKEGLAHFASRNAMNIDGLGP 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++  +  +     +R  AD++ L   Q  +  K      FG+ S TNL  SI+  R+ 
Sbjct: 459 KIIEQLWDKK----LVRDFADLYRLNEEQLLTLDK------FGEKSATNLLTSIDNSRHN 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER +F LGIRHVGA++AR +A+ + S       ++ ++  + +D   +  V  +G  I
Sbjct: 509 SVERLLFGLGIRHVGAKVARLIAEKFGS-------LDAVMKASAED---IAAVDTIGPTI 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             ++  ++ N +    ++  LK+V  ++        ++SSE   +++V TG L    R +
Sbjct: 559 GDSVATYFANTQVHQLIQE-LKDVQVNMEYTAASHVDLSSEWNGQRVVLTGKLAMFTRGE 617

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E++ + GA V+  +S+KT+++I G+  GSKL+KAQ LG+ I +E++F   +++ N
Sbjct: 618 AKEWLEEHGAQVTGSVSKKTNLLIAGEKAGSKLQKAQGLGIPIWDEQRFSQAMKEDN 674


>gi|70726048|ref|YP_252962.1| DNA ligase [Staphylococcus haemolyticus JCSC1435]
 gi|84028902|sp|Q4L7L9|DNLJ_STAHJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|68446772|dbj|BAE04356.1| DNA ligase [Staphylococcus haemolyticus JCSC1435]
          Length = 667

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 251/714 (35%), Positives = 378/714 (52%), Gaps = 82/714 (11%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  +  Y    YY    P + DSEYD L R    I  A P+    + P+ P  ++G
Sbjct: 10  ELHDLLNQYGYE---YYVQDNPSVPDSEYDKLLRELIDIEEAHPEF---KSPDSPTVRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE+  S  KV H  P LSL   +N ++LR+F  RI     ++   S+ +  E KIDG  +
Sbjct: 64  GEVQSSFEKVNHDTPMLSLGNAFNEQELRRFDQRI-----REQVGSVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y +G+FV    RGDG +GED++  +R I  IP  L +N P   EVRGE Y+ ++ F+
Sbjct: 119 SLKYVEGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKINEPLSFEVRGEAYMPRSSFI 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      +P+ANPRNAA+G LR+L+P     R L+ F++ +   ++  A  Q   L
Sbjct: 177 RLNEEKEKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFDATTQSGAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N+   +     G++ Y  +    R  L YDIDG+V KV++   Q ++G  
Sbjct: 237 DELDRLGFKTNHERMRVGDIEGVLEYIEKWTKQREQLSYDIDGIVIKVNDIEQQDEMGYT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T L DI++ IGRTG++TP A L+PV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTTLQDIELSIGRTGVVTPTAILDPVRVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RDIR+GD V+VK+AG++IP+VV  I   R     P+S P+ CP C 
Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSITERRPEGTLPYSMPTHCPSCD 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---QQL---- 491
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG    QQL    
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYHHN 458

Query: 492 ------DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
                 D F+ +ED         D+  L+R               G   V NL  +I   
Sbjct: 459 VINDVADIFYLTED---------DLLPLER--------------MGSKKVENLLKAIEDA 495

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SLE  +F LGIRH+G + ++ LA+ Y +     +               LI +  +G
Sbjct: 496 KANSLEHLLFGLGIRHLGVKASQVLAEKYETMDRLLEVTEE----------ELISIHDIG 545

Query: 606 DIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           D +AQ++V + +N      +E L    +  V   I   +     + +NK +V TG LQ++
Sbjct: 546 DKLAQSVVTYLENEDIKALIEKLKYKNVNMVYNGIKTSDIEGHPDFKNKTIVLTGKLQQL 605

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            R +A  ++   GA V++ +++KTD++I G++ GSKL KA++ G +I  EEQF+
Sbjct: 606 TRKEASAWLELQGAKVTSSVTKKTDLVIAGEDAGSKLTKAEKFGTEIWTEEQFV 659


>gi|88703478|ref|ZP_01101194.1| DNA ligase [Congregibacter litoralis KT71]
 gi|88702192|gb|EAQ99295.1| DNA ligase [Congregibacter litoralis KT71]
          Length = 674

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/715 (33%), Positives = 386/715 (53%), Gaps = 64/715 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R  + SL +++   +  YY    P + D EYD   R    +  A P+L    D + P  +
Sbjct: 7   RNRVHSLREQLERWNHEYYILDSPTVPDQEYDGALRELQTLEEAHPEL---RDASSPTQR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI-FFTLEPKIDG 136
           +G     +   V H +P LSL+  ++ E+L  F+ R+     + D +S+     EPK+DG
Sbjct: 64  VGAAPLSAFSSVEHPMPMLSLDNAFSDEELAAFLKRVV---DRLDVDSVPELVAEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             +++ Y +G    AA RGDG  GED++  +R I ++P ++   + P ++E+RGE+++ +
Sbjct: 121 IAVSLIYREGLLERAATRGDGTYGEDITLNVRTIRSVPLKLRGASCPALVEIRGEIFMPR 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK-TSEIFAK 252
             F A N+     G KP+ NPRNAA+G LR+L+ + IT  R L F  +  G+   E +  
Sbjct: 181 AGFEAFNEHARRHGEKPFVNPRNAAAGSLRQLD-SKITARRPLEFCAYASGQHPEEGWPG 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +++LQ     G P++    + +     + Y++ +   R  L +DIDG+VYKV++F+ Q
Sbjct: 240 SHWDVLQLFASWGVPISRYAERLSGLDDCIDYFHRLGDERDALSFDIDGIVYKVNDFAAQ 299

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  AR+PRW I+ KF  ++A T++  ++ Q+GRTG +TPVARLEPV +GG  ++NAT
Sbjct: 300 RELGFVARAPRWSIARKFPAQEAVTKVTGVEFQVGRTGAITPVARLEPVFVGGVTVSNAT 359

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I  L           ++  GD V+V+RAG+VIP+VV +I   R   + P   P 
Sbjct: 360 LHNMDEIARL-----------NLHHGDSVVVRRAGDVIPQVVSVIAERREESSAPIDAPP 408

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS V R     T       RCTGGL C+AQ    ++HF SR A +I+GLG++ ++
Sbjct: 409 SCPVCQSPVERVAGEAT------LRCTGGLVCAAQLKAAVRHFASRRAMDIDGLGEKIVE 462

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      +R  AD+F L   +Q +   +E +   G+ S   L  +I+  R  +L R
Sbjct: 463 QLVDRG----LVRDVADLFKL---EQGALLSLERM---GEKSAAKLLAAIDASRQTTLPR 512

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LG+R VG   A +LA ++            + A +  D   L+ VP VG ++A+ +
Sbjct: 513 FIFALGVREVGEATALALANHF----------GTLEALSGADLDDLLEVPDVGPVVAEHV 562

Query: 613 VEFYQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
             F++   N+  +  LL+         V+P +G         ++ +  V +G L+   R 
Sbjct: 563 HGFFRADANLGVLRRLLEAGIAWPAVAVAPEVG-------GALDGQVWVVSGKLESQSRD 615

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+  +  LGA  +  +S KT +++ G   GSKL KA+ LGV++++E +FL  L+
Sbjct: 616 EAEAALRALGARTAKSVSGKTTVLLAGPGAGSKLSKAESLGVEVISEAEFLTRLE 670


>gi|73662196|ref|YP_300977.1| NAD-dependent DNA ligase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|84028903|sp|Q49YU8|DNLJ_STAS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|72494711|dbj|BAE18032.1| NAD-dependent DNA ligase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 667

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 242/701 (34%), Positives = 388/701 (55%), Gaps = 56/701 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+  R+ D   P  ++G
Sbjct: 10  ELHRLLNQYSYE---YYVKDNPSVPDSEYDKLLHELIDIETQHPEY-RTAD--SPTVRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G    +  KV H  P LSL   +N EDLRKF  RI     + +  ++ +  E KIDG  +
Sbjct: 64  GSAQSTFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDNIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++YE G+FV    RGDG +GED++  ++ I  IP  L +N     EVRGE Y+ +  F+
Sbjct: 119 SLKYENGRFVQGLTRGDGTTGEDITENLKTIHAIP--LKINESRTFEVRGEAYMPRKSFV 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+   A   +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A  Q E L
Sbjct: 177 NLNEAKAANEEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFTQFNADTQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N   ++  T   +++Y ++    R  LPYDIDG+V KV+    Q+ LG  
Sbjct: 237 DELDQLGFKTNQERQRVQTIEEVMTYIDKWTKQRENLPYDIDGIVIKVNALEQQETLGFT 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED 
Sbjct: 297 QKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAVLEPVRVAGTTVSRASLHNEDL 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR+GD V++K+AG++IP+V+  +++ R  DA+ +  PS CP C+
Sbjct: 357 IH-----------DKDIRIGDSVVIKKAGDIIPEVIKSVLDRRPDDAEIYHMPSHCPSCE 405

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + +   +++E
Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYENE 458

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L +       ++      G+  V NL ++I K ++ SLE+ +F LG
Sbjct: 459 ----KIKDVADIFYLTKEDLLPLDRM------GEKKVDNLLNAIEKAKSNSLEQLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRH+G + ++ +A+ Y +           + H  ++  +L+ +  VG  +AQ++V + +N
Sbjct: 509 IRHLGVKASQVIAEKYGTIDE--------LFHVTEE--ALMDIHDVGHKLAQSVVTYLEN 558

Query: 619 PRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
                 ++ L    +  +   +   E     + ++K +V TG L ++ R++A  ++   G
Sbjct: 559 EDIRALIDKLKAKNVNMIYKGVKTTELEGHPDFKDKTIVLTGKLYQMTRNEASNWLALQG 618

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           A V+  +++ TD++I G++ GSKL KA++ G +I +EE F+
Sbjct: 619 AKVTNSVTKNTDLVIAGEDAGSKLAKAEKFGTEIWSEEAFV 659


>gi|159897339|ref|YP_001543586.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779]
 gi|254781348|sp|A9AXP4|DNLJ_HERA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|159890378|gb|ABX03458.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779]
          Length = 673

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 374/712 (52%), Gaps = 54/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQ     +SL  E++ ++  YY    P++ D++YD+L     AI   +P+L     P+ P
Sbjct: 5   EQTVARAASLRDELNLYNHHYYTLDAPLVSDAQYDSLLNELRAIEAEYPEL---RTPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G        KV H +P LSL   +N +DL  +  R  +    +    + +T+EPKI
Sbjct: 62  TQRVGSAPLSKFPKVQHPVPMLSLGNAFNADDLAAWRRRAEQIIGTQ---PMSYTVEPKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGE 190
           DG  + + Y  G F   A RG+G  GED++A +R I  +P  L       +PE IEVRGE
Sbjct: 119 DGLAVALTYINGVFSVGATRGNGEIGEDITANLRTIRDVPLRLQPIDGQALPERIEVRGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    F  LN+     G K +ANPRNAA+G LR+L+ T   +R L FF + +G  S +
Sbjct: 179 VYLPIESFNQLNERQAHAGEKVFANPRNAAAGSLRQLDSTITASRPLRFFAYAVGPFSGV 238

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K Q + L  +R  GF VN   R    F  ++ Y +E  S R +L Y++DG+V K+++F
Sbjct: 239 ELKSQAQTLDTLRTYGFSVNPDTRLFADFEAVIEYCHEWMSRRESLSYEVDGVVVKINDF 298

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++Q++LG   R PRW I++KF  ++ +T LL+I I +GRTG L P A LEPV++GG  + 
Sbjct: 299 AMQRELGVVGRDPRWAIAYKFPAREETTTLLNIVINVGRTGKLIPNAVLEPVSLGGTTVQ 358

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           +A+LHN DYI             RDIR+GDRV+VKRAG+VIP V+  IV  R  D + + 
Sbjct: 359 HASLHNADYII-----------SRDIRIGDRVVVKRAGDVIPYVIGPIVEARTGDERVWP 407

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C   V      + G  V  + C     C A+ +  ++H+VSR A +I G+G++
Sbjct: 408 APTHCPTCGQPV-----EQIGDEVDIY-CVNN-TCPARLIRSIEHWVSRGAMDIVGMGER 460

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           Q   F +         IP DI+ L      +        G+G+  V NL ++I + +   
Sbjct: 461 QASQFVEM---GLIKSIP-DIYRL------TVDSFGGREGYGERRVANLLNAIEESKRRP 510

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L+R I +LGI  VG   A  LA+Y+ S    AQ               L  +  +G   A
Sbjct: 511 LDRVITALGINGVGTVAAADLARYFRSLPALAQATIE----------QLTAIEGIGGSTA 560

Query: 610 QAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           Q++V+F+  P N   I  + AL  +  PS     +  S  +  K  V TGTL  I R  A
Sbjct: 561 QSVVDFFNTPANQQLIAELLALGLKAEPS--EVAELQSDRLAGKSFVITGTLPGISREAA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           Q  +   G  V   +S+KTD ++ G+  GSKL KAQ LGVK+++ ++   LL
Sbjct: 619 QALIEAHGGKVGGSVSKKTDYLLAGEAAGSKLTKAQSLGVKVLSMDELHALL 670


>gi|241662937|ref|YP_002981297.1| DNA ligase [Ralstonia pickettii 12D]
 gi|240864964|gb|ACS62625.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12D]
          Length = 813

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 240/680 (35%), Positives = 367/680 (53%), Gaps = 67/680 (9%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E++ +   YY   +P + D+EYD L R  +A+    P+L   + P+ P  ++GG + 
Sbjct: 20  LRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPEL---KTPDSPTLRVGGAVL 76

Query: 84  LSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMIT 140
                V H IP LS+  E        R F   + R     D D  + +  E K DG  I+
Sbjct: 77  PEFAAVRHVIPMLSIRTETDTTPNGARAFDASVRRELGLDDTDPPVEYAAELKFDGLAIS 136

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKND 197
           +RYE+G  V AA RGDG +GEDV+  IR I  IP  LS    ++P+++EVRGEVY+ ++D
Sbjct: 137 LRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEVYMRRDD 196

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKGQ 254
           F  LN      G K + NPRN A+G +R+L+P     R L+FF +GLG+ +  +      
Sbjct: 197 FEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEVAGWKGMPGTH 256

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             ML  ++  GFPV+N         G+V ++  +++ R +LP+DIDG+VYKV+  +LQ++
Sbjct: 257 SSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAKRDSLPFDIDGVVYKVNSLALQRE 316

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG R+R PRW ++HK+  ++A T +  ID+Q+GRTG +TPVARL PV +GG  +TNATLH
Sbjct: 317 LGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARLVPVFVGGVTVTNATLH 376

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER------------- 421
           NED ++            +D+RVGD V+V+RAG+VIP+VV ++++ R             
Sbjct: 377 NEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVSVVLDRRPMDDVPGSDLFNP 425

Query: 422 --HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
              P   PF  P  CP+C S VVR+     G+ VA  RC+GGL CSAQ+ E ++HF  R 
Sbjct: 426 QQQPKYPPFELPKTCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAGRR 479

Query: 480 AFNIEGLGKQ------QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
             +IEGLG++      +LD+     D  + + +  D   ++RR           +  G +
Sbjct: 480 MMDIEGLGERYIDNLVELDYVHGIAD-LYKLTL-EDFLEMKRRADERDGVTPETVSAGKI 537

Query: 534 SVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           +     NL + I   +   L RF+F+LGIRHVG   A++LA +  S     +    ++  
Sbjct: 538 ATKWAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAMIRRAPAPLLLA 597

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIE 648
             D          VG  +A+AI +F+  P+N  A++ALL+      G H  N     ++E
Sbjct: 598 LPD----------VGATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHAPNAKLREKLE 647

Query: 649 NKKLVFTGTLQKIQRHKAQE 668
             +L  T  + K+   +A++
Sbjct: 648 PAELYATLGVPKLTATRAKQ 667



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +V TGTL  + R +A+  +   GA VS  +S+KTD ++ G++ GSKL KA++L V
Sbjct: 734 LAGKTVVLTGTLPNLTRDEAKAMLEAAGAKVSGSVSKKTDYVVAGEDAGSKLAKAEELNV 793

Query: 707 KIMNEEQFLFLLQQ 720
           K+++E   L LL++
Sbjct: 794 KVLDEAGMLALLKK 807


>gi|294102358|ref|YP_003554216.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261]
 gi|293617338|gb|ADE57492.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261]
          Length = 684

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 251/719 (34%), Positives = 401/719 (55%), Gaps = 49/719 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A + + +L +EI+ H   YY    P I D EYDAL R   ++  AFP+    +DP+ P 
Sbjct: 5   EALQRIEALREEINRHAHLYYVLDTPEIADHEYDALFRELASLEEAFPEF---DDPDSPT 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +++GG       KV H  P LSL+   + E++  F  R++         ++ +  E KID
Sbjct: 62  HRVGGAPLDRFEKVIHESPLLSLDNALSKEEVWSFCDRVFSGLGL---GNLEYLCELKID 118

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YE G F+  A RGDG  GEDV+A +R I ++P  L   +   +EVRGEV +++
Sbjct: 119 GLAVSLIYEDGVFIRGATRGDGLVGEDVTANLRTIRSLPLRLREKVSGRMEVRGEVLMTR 178

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F ALN E    G   +ANPRNAA+G LR+L+ +   +R L+ F++ +    E   + Q
Sbjct: 179 EQFAALNQEREEGGELLFANPRNAAAGSLRQLDSSITASRKLSIFLYYVAHPQEHGLRTQ 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E+L  ++ LGFPV +     +T   I ++  E +  R +LPY  DG+V K+++    + 
Sbjct: 239 QEVLHWLQHLGFPVQSAWGVCSTRQDIDAFIEEWREKRLSLPYSTDGVVLKINQVDFWED 298

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A++PRW I+ K+  ++ ++R+LDI++ +GRTG LTPVA LEPV++ G ++  A+LH
Sbjct: 299 LGTTAKAPRWAIAFKYPPEEKTSRILDIEVSVGRTGTLTPVAHLEPVHLAGTVVRRASLH 358

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I+            +DIR+ D+V+V++AGE+IP+VV ++   R  +   F  P  C
Sbjct: 359 NEDEIR-----------RKDIRIKDKVVVRKAGEIIPEVVRVLTEGRDGNEVEFQMPDTC 407

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S V+R      G++  A RC    +C AQ  E + HF SR A +I GLG + +   
Sbjct: 408 PACGSHVMR----IPGEV--ALRCPNRASCPAQLREGIAHFASRAAMDIRGLGDKLITQL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     IR  AD++TL+R    S  ++      G+ S +NL ++++  +N  L   I
Sbjct: 462 VDRQ----LIRNMADLYTLKREDLLSLDRM------GEKSASNLLEALSVSKNRFLSNLI 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGIR VG ++A  LA  + S         + ++   ++ LS I    VG  IA +I  
Sbjct: 512 TALGIRLVGKKVAEILADRFHSL--------DALSSAQEEGLSSIDG--VGPKIAASIKA 561

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671
           F+ +  N   + + LK+    +   EK++SS    +E+++ VFTG LQ + R +A+  V 
Sbjct: 562 FFDDEANKEMI-SRLKDAGVRV-VEEKSMSSVEGPLEDQRFVFTGELQSMSRGEAEALVK 619

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
            LG   S+ +S+KT I++ G   GSKL+KA++LG+ I+NEE+FL +++ Y      H D
Sbjct: 620 NLGGASSSSVSKKTSIVVAGPGAGSKLQKARELGITIINEEEFLQMIRPYERVFSKHTD 678


>gi|170016835|ref|YP_001727754.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20]
 gi|254781358|sp|B1MXQ8|DNLJ_LEUCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169803692|gb|ACA82310.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20]
          Length = 681

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 248/721 (34%), Positives = 396/721 (54%), Gaps = 63/721 (8%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P+  L+ + A++E+++L++ ++ +   YY+   P++ D  YDA   R   +   FP 
Sbjct: 4   EFTPVNNLTTQMAQQEIATLQKRLTDYGVAYYEEDAPLVEDYIYDAFYARLVLLEAQFPQ 63

Query: 65  LARSEDPNGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                 P+ P   +GG ++   L KV H  P LSL  ++++E+L+++  R  +    + +
Sbjct: 64  FVT---PDSPTQNVGGAKVKSGLAKVVHPAPMLSLGDVFSLEELQEWDERTTKTLGFQSE 120

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  + + Y  GK V A+ RG+G  GEDV+A ++ I +IP+ L+   P 
Sbjct: 121 ----YNLELKIDGLAVALTYVDGKLVQASTRGNGSIGEDVTANVKTIRSIPQTLTE--PI 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVH 241
            IEVRGE+Y+ K+ F  LN +  A G +P+ANPRNAA+G LR+LN   IT  R L+ FV+
Sbjct: 175 TIEVRGEIYMPKSSFATLNKQREADGLEPFANPRNAAAGSLRQLN-VAITKKRELSAFVY 233

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                  I    Q   L++   LG P ++  R   T   I +Y  E  S R  L Y IDG
Sbjct: 234 YTADPDAIGVTTQSGALERFAALGLPTDDHNRVIATMADIDAYIAEYTSQRERLAYGIDG 293

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV++   Q  LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV
Sbjct: 294 VVVKVNQLDNQLDLGHTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAVMDPV 353

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  A+LHN DY+             +DIR+GD V + +AG++IP++  +++ ER
Sbjct: 354 QLAGTTVQRASLHNPDYLN-----------AKDIRIGDTVTLHKAGDIIPEIGQVLLAER 402

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             + Q +  P+FCP C S +V  L+ +      A RC     C AQ  E+L HF SR+A 
Sbjct: 403 PANNQVYDIPTFCPACHSELVH-LDGEV-----ALRCINPF-CVAQIQEKLTHFASRNAM 455

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+G+G + +    K    A  I+  A I+ LQ  Q  S  K      F + SVTNL  +
Sbjct: 456 NIDGMGPRVVSQLLK----ANYIQDVASIYRLQETQLLSLDK------FKEKSVTNLLSA 505

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   ++ SLER +F LGIR VGA+ AR +A+ + + Q  A          +   + +  +
Sbjct: 506 ITTSKSNSLERLLFGLGIRMVGAKAARLIAEKFKTLQAIA----------DASVIDIASI 555

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-------KKLVF 654
             +G+ IA ++V++++ P      + LL E+  + G ++  +S  I +       KK+V 
Sbjct: 556 AGIGETIALSVVQYFKTPE----AKQLLIELQEA-GVNQTYLSDVIVDETSFFYGKKIVL 610

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG L+K  R +A +++   GA V+  +S KTD++I G++ GSKL+KA  LGV + +E+ F
Sbjct: 611 TGKLEKGSRTEATKWLQDHGAQVTGSVSAKTDLLIAGEDAGSKLDKANALGVTVWDEQAF 670

Query: 715 L 715
           +
Sbjct: 671 I 671


>gi|55379625|ref|YP_137475.1| NAD-dependent DNA ligase LigA [Haloarcula marismortui ATCC 43049]
 gi|74516349|sp|Q5UY84|DNLJ_HALMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|55232350|gb|AAV47769.1| DNA ligase [Haloarcula marismortui ATCC 43049]
          Length = 691

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 243/713 (34%), Positives = 374/713 (52%), Gaps = 53/713 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E +  E AR++   L + + YHD  YY  + P+I D  YDAL  R   +  AF     +
Sbjct: 23  VEDVDAETAREQADQLREALRYHDYRYYVENDPVIGDRAYDALFSRLQRLESAF-----N 77

Query: 69  EDPNG-PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            D +G P  ++GGE    L  V H     S+++     D+R+F +R+        D  + 
Sbjct: 78  LDTDGSPTQRVGGEPLDELPDVEHVARMGSIDQGGEEADVREFDSRVRNGL----DGDVQ 133

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  EPK DG  + I YE G +  AA RGDG  GEDV+  +R I ++P+ L  + P+ + V
Sbjct: 134 YFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRTISSVPQRLRGDYPDFLAV 193

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVYI ++ F   N E +  G  P+ANPRNAA+G LR+L+P+    R L+ F  G+   
Sbjct: 194 RGEVYIPRDAFTTFNRERVERGEDPFANPRNAAAGTLRQLDPSVTAERPLSIFFFGVLDA 253

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S  F +   E+ ++    G  V +     +     + Y NE +  R  L Y+IDG+V KV
Sbjct: 254 SVDF-ESHSELHERFPEWGLRVCDRTAVVDDIDAAIDYRNEQQQARDDLDYEIDGVVIKV 312

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+      LG  AR+PRW  ++KF  ++  T + DI +Q+GRTG LTPVA ++PV +GG 
Sbjct: 313 DDMDACDDLGSTARAPRWAFAYKFPARKEETTVRDIVVQVGRTGRLTPVALMDPVEVGGV 372

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ A+LHN   I  L            + VGDRV +KRAG+VIP VV+++ ++      
Sbjct: 373 TVSRASLHNPSLIADL-----------GVDVGDRVRIKRAGDVIPDVVEVLDDDGD---G 418

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F FP  CP C S V  D     G +     CTGGL C AQ+   ++H+ SRDA +IEG+
Sbjct: 419 HFEFPETCPACDSPVEHD-----GPMAF---CTGGLTCPAQRERSVEHYASRDALDIEGV 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +         A  +  PAD++ L      +   +  + G+G+ S  NL D ++  R
Sbjct: 471 GEKAVQQLLD----AGLVSDPADLYDL------TVEDLTGLEGWGETSARNLVDGMDSAR 520

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L  F+ +LGI  VG   AR+LA+ + +++        + A +  D  +   VP VG 
Sbjct: 521 EPPLADFLVALGIPEVGTVTARNLAQEFGTFEAI------LDAADEGDTDAFEAVPDVGQ 574

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +A++IVEF++   N   ++ LL  V P     E+     ++ +  VFTG+L    R +A
Sbjct: 575 TVARSIVEFFEGEGNRAVIDRLLDHVEPQAA--EETDGDALDGQTFVFTGSLDGYTRGEA 632

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLL 718
           QE V +     ++ +S  TD +++GDNPG  K + A    V+ + E++F  LL
Sbjct: 633 QELVERNDGSATSSVSGNTDYLVLGDNPGQRKQDDAAAHDVETLTEDEFEELL 685


>gi|94986686|ref|YP_594619.1| NAD-dependent DNA ligase [Lawsonia intracellularis PHE/MN1-00]
 gi|123385090|sp|Q1MRS8|DNLJ_LAWIP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94730935|emb|CAJ54298.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 682

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/722 (34%), Positives = 397/722 (54%), Gaps = 66/722 (9%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P  +L  ++ ++ +  L + I++H+  YY    P I DSEYD   +    + + FP L  
Sbjct: 6   PQYSLPSKKEKQRVRELRKFINHHNYLYYTLDDPEISDSEYDKAFQELLTLENTFPSLKT 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI--------YRFWQ 119
           +   N P  K+G  +   L +  H     SL+ +++ ++   F+ R+        + FW 
Sbjct: 66  N---NSPTQKVGNNILKKLEEQPHRQRMYSLDNVFSNDEWEGFLKRLANALPEVPFSFW- 121

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-- 177
                      +PK+DG  + + YEKG+   A  RGDG  GE V+  +R I  IP+ L  
Sbjct: 122 ----------CDPKMDGLALELIYEKGQLTSALTRGDGDIGEVVTEAVRTISNIPKRLKH 171

Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYL 236
           S+N PE++E+RGEV IS+ DF  LN E     +K +ANPRNAASG +R+L+PT   +R L
Sbjct: 172 SINAPELLEIRGEVVISRADFKKLNKEQEKKKKKLFANPRNAASGSVRQLDPTITASRPL 231

Query: 237 NFFVHGLG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            F  +G+G  + S +     +E++  ++  GF      +   +   + SYY  +++ R +
Sbjct: 232 RFLAYGIGEIQPSSLKWNTYHELMSYLKEYGFETPPKGKLCISSTEVQSYYTRLQAQRYS 291

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L Y+IDG+V K+D+   Q++LG  +R+PR+ I+ KF   Q  TRLL I IQ+GRTG+LTP
Sbjct: 292 LRYEIDGIVMKLDDIQSQEKLGYTSRAPRFAIAWKFPATQVQTRLLQIHIQVGRTGVLTP 351

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA LEP+N+GGA I+ ATLHNED IK            +DIR GD V+V+RAG+VIP++V
Sbjct: 352 VAELEPINVGGATISRATLHNEDEIK-----------NKDIRPGDMVIVQRAGDVIPEIV 400

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             I+++R   ++PF FP  CP+C  +V R  N        A RC   L+C A +L+ + +
Sbjct: 401 SPILSDRSAKSKPFVFPKICPVCHEKVYRINNE------VAWRCI-NLSCPAIRLQSIIY 453

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVS+   NI+G+G++ ++    S      I+ PAD+FTL      +  ++   L    + 
Sbjct: 454 FVSKSGLNIQGIGQRLIELLVTSG----CIKTPADLFTLTTADLLTYKRMGAKLAAKTIQ 509

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             +L      ++ +SL R I +LGIRHVG + AR LA  ++       +++ + + + +D
Sbjct: 510 ALSL-----AKQTMSLHRLICALGIRHVGEQTARILASSFI-------DLDALSSASLED 557

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLV 653
              L ++  +G  +A +I  F++N  NI  +    +  + P    ++         KKL+
Sbjct: 558 ---LQQLSEIGPEVASSIQAFFKNKANIQMINQFREMNIWPIQQVNDTTTKGFFTGKKLL 614

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTGTL++  R + +    + GA+V   +S K D +I G NPGSKL KAQ+L + I++E  
Sbjct: 615 FTGTLER-PRAEMKRLAEEAGAIVMTGISHKLDYVIAGKNPGSKLNKAQELHISILDEPT 673

Query: 714 FL 715
           FL
Sbjct: 674 FL 675


>gi|329942957|ref|ZP_08291736.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10]
 gi|332287548|ref|YP_004422449.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC]
 gi|313848123|emb|CBY17124.1| putative DNA ligase [Chlamydophila psittaci RD1]
 gi|325506604|gb|ADZ18242.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC]
 gi|328815217|gb|EGF85206.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10]
 gi|328914798|gb|AEB55631.1| DNA ligase, NAD-dependent [Chlamydophila psittaci 6BC]
          Length = 660

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 243/705 (34%), Positives = 397/705 (56%), Gaps = 54/705 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           +R++  SL ++I   D  YY    P I D +YD   R+  +I    P+      P+    
Sbjct: 6   SREQYLSLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLWSPS---M 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G   + S   V H+ P LS+   + +E+L +F +R+    +K    +  +TLE KIDG
Sbjct: 63  RLGDRASGSFPIVAHAHPMLSIANAYTLEELYEFFSRM----EKALGYTPKYTLEIKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + +RYE+   + A  RG+G  GED++A IR I T+P  LS   PE +EVRGEV+ S+ 
Sbjct: 119 IAVALRYEQRVLLQALSRGNGRKGEDITANIRTIRTLPLRLSKEAPEFLEVRGEVFFSRA 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  +N       +  +ANPRNAA G L+ L+  +  +  N  +   G  +E   +  YE
Sbjct: 179 TFRQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQR-NLEISIYGSLAEENKRSHYE 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L   R  GFPV    RQ  T   +V+  +E++++R  LP +IDG+V KVD+   QK LG
Sbjct: 238 NLLLCREWGFPVLGQPRQCQTIDEVVASLHEIEALRDQLPMEIDGVVIKVDDIEDQKVLG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+  RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+ ++ A+L+NE
Sbjct: 298 MTAKHYRWALAYKYAPERAETILEDILVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNE 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V V++ GE+IP+VV + + +R   +QP+  P +CP+
Sbjct: 358 DEIE-----------RKDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGSQPWVMPEYCPV 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  +V R+ +        + RCT  L CSA  +E+++ F  RDA +I+ LG++ +   F 
Sbjct: 407 CHGKVTRESDK------VSVRCTNPL-CSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFD 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I    DIF      Q +   + ++ GF D S+ N+  SI K +++ L+RF+ +
Sbjct: 460 ----LGCIHRRCDIF------QITEEDLRHVPGFKDKSIRNVLKSIEKAKSVPLDRFLTA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A +LA+++LS       + ++++ + DD   L  V  +GD +A++IV ++
Sbjct: 510 LGIPYVGIGGANALAQHFLS-------LESVMSASLDD---LKSVEGIGDKVAESIVAYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             P +   ++ +L     S+G H    +  SS    K  V TG+L+K+ R +A+ Y+   
Sbjct: 560 NQPEHREEIQIML-----SLGVHVLPYRRESSSCLGKTFVITGSLEKLTRSEAETYIRNC 614

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  V + +S+ TD ++VG +PGSKL+KAQ+L + I++E++ L +L
Sbjct: 615 GGKVGSSVSKNTDYLVVGKDPGSKLQKAQELEIPILSEDELLKIL 659


>gi|229917963|ref|YP_002886609.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
 gi|229469392|gb|ACQ71164.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
          Length = 664

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/712 (35%), Positives = 394/712 (55%), Gaps = 66/712 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L Q ++ +   YY   +P + DSEYD L      I   +P+L     P+ P  ++GG
Sbjct: 7   VEELRQTLNQYGYEYYVLDRPSVPDSEYDRLMNELIQIETDYPEL---RTPDSPTQRVGG 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
               +  KVTH  P LSL  +++ E+L +++ RI    +K    +  F  E K DG  ++
Sbjct: 64  APLDAFVKVTHDTPMLSLGNVFSKEELVEWVERI----EKDLGYTPTFVAELKFDGLAVS 119

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           ++YE G+ V  A RGDG +GED++  ++ I +IP  L LN     EVRGE Y+ K  F  
Sbjct: 120 LKYENGRLVRGATRGDGTTGEDITQNLKTIRSIP--LRLNEDVTFEVRGEAYMPKRSFEQ 177

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           LNDE   +G   +ANPRNAA+G LR+L+     +R L FF +GL    ++ A    E L 
Sbjct: 178 LNDERERIGEPLFANPRNAAAGSLRQLDSKIAASRNLAFFAYGLVSQDDLVAS-HDESLD 236

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            ++ LG  V+       T   +  Y     + RS LPY+IDG+V KV  +  Q+QLG  A
Sbjct: 237 YLKRLGVAVSGDYTTCQTADELWDYIETYVTKRSDLPYEIDGIVIKVAGYEEQEQLGFTA 296

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           +SPRW +++KF  ++  T + D+D  +GRTG +TP AR  PV++ G+ +T ATLHNED+I
Sbjct: 297 KSPRWAVAYKFPAEEVVTTIEDVDFSVGRTGKVTPRARFAPVSVAGSTVTYATLHNEDFI 356

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           K            +D+ +GDRV++K+AG+VIP VV  + +ER  + +   FP+ CP C S
Sbjct: 357 K-----------EKDLHIGDRVVIKKAGDVIPAVVSALASERSGEERVIEFPTHCPACGS 405

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            ++R      G+  A HRC     C AQ LE L HFVSR A NI+GLG++ +    +   
Sbjct: 406 ELIR----LEGE--ADHRCVNP-ECPAQLLEGLIHFVSRQAMNIDGLGEKVITQLHE--- 455

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIFS 556
            A  +   AD++ L R         +++LG    G+ SVTNL  +I + +  SLER +F+
Sbjct: 456 -AGLVHNVADLYRLDR---------DDLLGLERMGETSVTNLLSAIEQSKQNSLERVLFA 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG + A  +A+ +       + ++ IIA   ++   L  +  +G  +A++IV ++
Sbjct: 506 LGIRLVGQKAASLIAERF-------ETMDAIIAATVEE---LTSIDGIGTKMAESIVLYF 555

Query: 617 QNPRNICAVEALLKEVSPS----IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEY 669
           + P        L+KE++ S      +  K  ++E   +  K +V TG L ++ R +A + 
Sbjct: 556 EKPE----ARELVKELAESGVNLSFKGMKRPTTEGAPLSGKTVVLTGKLHEMTRGEAGKQ 611

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +  LGA V+  +S+ TD+++ G+  GSKL KA+ LG+++ +E + L  L+++
Sbjct: 612 LELLGASVTGSVSKNTDLLVAGEKAGSKLAKAESLGIEVWDEAKLLDFLKEH 663


>gi|262276888|ref|ZP_06054681.1| DNA ligase, NAD-dependent [alpha proteobacterium HIMB114]
 gi|262223991|gb|EEY74450.1| DNA ligase, NAD-dependent [alpha proteobacterium HIMB114]
          Length = 672

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 250/705 (35%), Positives = 397/705 (56%), Gaps = 45/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE    + ++  ++  YY  + P I D+ YD LK++   I +   +   SE      + I
Sbjct: 6   KEYQEKKNKLFEYNKFYYDKNSPKIDDATYDRLKKQL--IFYEKTNQI-SEKEKKVSDTI 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G   +    KV H+   LSLE  ++ ED+ +F  +I  +   K  +      EPKIDG  
Sbjct: 63  GFSPSKKFSKVKHAESMLSLENAFDQEDIFEFYKKINNYLNFKSSHREELFAEPKIDGIS 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
            +++Y  G  +    RGDG  GED++  +R I  +P R+   N  E+I VRGEVYI K++
Sbjct: 123 ASLKYVNGYLIQGLSRGDGQFGEDITENLRTIDDVPKRLKKFNSGELI-VRGEVYIPKSE 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256
           F  ++D+        +ANPRNAASG LR+ N T+  +  L FF +G    +      Q +
Sbjct: 182 FKNISDK--------FANPRNAASGSLRQKNATNTAKIPLRFFAYGTIFMNHNLQSKQSK 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  ++  GF +N           + + Y ++++ RS L YDIDG+VYKVD F LQ++LG
Sbjct: 234 FLDFLKLEGFKINPLGIIIKDEKDLFANYTKIENKRSELDYDIDGIVYKVDNFKLQQRLG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
               SPRW I+HKF+ ++  +++ +I+IQ+GRTG LTPVA++ P+NIGG +++NATLHNE
Sbjct: 294 NLTNSPRWAIAHKFSAERGISKIKNIEIQVGRTGALTPVAKINPINIGGVIVSNATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD ++V+RAG+VIP+VV++  ++R   ++ F FP  CP 
Sbjct: 354 DEIE-----------RKDIRIGDTIVVQRAGDVIPQVVEVDKSKRDKSSKKFIFPKKCP- 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           C    +++ N  T K  A  RC   G  C+    E++KH+VS+DA NIEGLGK+ ++ F+
Sbjct: 402 CGFETIKEFNKLTKKYDAVRRCPDKGYECNLITKEKIKHYVSKDAMNIEGLGKKVVENFW 461

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   +++P DI+ L      +  KI  + G+G +S  NL  SINK + ISLE+FI+
Sbjct: 462 DLN----LVKLPHDIYKL------NFEKISQLEGWGKISANNLKKSINKTKKISLEKFIY 511

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGIRH+G E A+ LAK++ S + F +    ++   N+ +  L+ +  +G+    ++  F
Sbjct: 512 SLGIRHIGQENAKILAKFFQSIKIFKK----LVFEKNNLFKDLLELDGIGETQINSLRNF 567

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + N  N    E L+K +  SI         +  NK  +FTG ++K+ R +A++ V   G 
Sbjct: 568 FSNNTNKKVFEELIKNL--SILDFIIQSKGKFINKTFMFTGGMEKMSRSEAKQIVENEGG 625

Query: 676 VVSAILSRKTDIIIVGDNPGS--KLEKAQQLGVKIMNEEQFLFLL 718
            V   LS+K D ++ GD+  +  K+ +A+ LG KI+ E+ +  L+
Sbjct: 626 KVLGSLSKKLDYLVAGDSKPTLKKINQAKDLGTKILKEKDWYKLI 670


>gi|227509971|ref|ZP_03940020.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190577|gb|EEI70644.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 675

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 247/717 (34%), Positives = 386/717 (53%), Gaps = 59/717 (8%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +  E ++ +QA      L ++++   D YY Y  P + DS YD   ++   +   FP + 
Sbjct: 1   MAFEDMTEQQAESAAQELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV 60

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  K+G        KV H IP LSL  +++IE+L+ F  R+       D  S+
Sbjct: 61  T---PDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADRL------SDSESV 111

Query: 127 FF--TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            F    E KIDG  I++RYE G  V  A RG+G  GED++  ++ I +IP+ LS   P  
Sbjct: 112 PFEYNCELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIPQRLSR--PIN 169

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           IEVRGE Y+ K  F+ LN +    G  P+ANPRNAA+G LR+L+      R L+ F++ +
Sbjct: 170 IEVRGECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNV 229

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               ++ +  Q  ML++++ LGF +N   + A+    I  Y       R TL Y IDG+V
Sbjct: 230 ANYDDLESDTQSGMLEELKKLGFTINADYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIV 289

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+   LQ+ LG   + PRW I++KF  ++A T + DI+  +GRTG++TP A ++ V +
Sbjct: 290 IKVNSLPLQRSLGATVKVPRWAIAYKFPPEEAETIVRDIEWTVGRTGVVTPTAVMDEVTL 349

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A+LHN DY++            +DIR+ D V + +AG++IP++   + ++R  
Sbjct: 350 AGTTVSRASLHNPDYLR-----------EKDIRISDTVKLHKAGDIIPEISTYVKDKRQV 398

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+QP+  P+ CP C S +V  L+ +      A RC     C AQ  E L HF SRDA NI
Sbjct: 399 DSQPYEIPTKCPSCDSELVH-LDEE-----VALRCINP-QCPAQLKEGLTHFASRDAMNI 451

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG + +   FK       +   A ++ L   Q  +  K      FG+ S  NL  +I 
Sbjct: 452 DGLGPKIIAQLFKKH----MLTDVAGLYELTFDQLMTLDK------FGEKSAGNLLTAIA 501

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             RN S ER +F LGIRHVGA+ AR +A+ + +           IA           +  
Sbjct: 502 NSRNNSCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDATAQEIAE----------IDT 551

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNV---SSEIENKKLVFTGT 657
           +G IIA ++V ++  P++   + + LK+V  +   +G  ++++    S    K+LV TG 
Sbjct: 552 MGMIIADSVVTYFSMPQSKELI-SQLKQVGVNMDYLGATDEDLKESDSVFNGKRLVLTGK 610

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           LQ I R +A  ++   GA VS  +S+KTDI++VG++PGSK +KA+ LG+++ +E +F
Sbjct: 611 LQHITRPEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIEVWDENRF 667


>gi|224476961|ref|YP_002634567.1| DNA ligase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254781419|sp|B9DMU3|DNLJ_STACT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222421568|emb|CAL28382.1| DNA ligase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 668

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/705 (33%), Positives = 384/705 (54%), Gaps = 57/705 (8%)

Query: 20  ELSSLEQEISY----HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           EL++  QE+ +    +   YY    P + DSEYD L R    I +A P+  ++ED   P 
Sbjct: 3   ELATRVQELHHLLNKYSHEYYVQDNPSVPDSEYDKLLRELIDIENAHPEY-KTED--SPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE   +  KV H  P LSL   +N E+LR+F  R+     ++    + +  E KID
Sbjct: 60  VRVGGEAQATFNKVRHDTPMLSLGNAFNEEELRRFDARV-----REKAGKVEYMCELKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  ++++YE G+FV    RGDG  GED++A +R I  IP  L +N P   EVRGE Y+ K
Sbjct: 115 GLAVSLKYENGRFVQGLTRGDGTIGEDITANLRTIRAIP--LRINKPLTFEVRGEAYMPK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN +    G + +ANPRNAA+G LR+L+      R L+ F++ +   +   A+ Q
Sbjct: 173 KSFEHLNQQKEEAGEQAFANPRNAAAGSLRQLDSKLAAKRRLSIFLYSVNDFTNFHAESQ 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L ++  LGF  N   ++ +   G++ Y     + R  LPYDIDG+V KV++   Q++
Sbjct: 233 SEALDELDELGFKTNQNRKRVSDIDGVLEYIKYWTAHREELPYDIDGIVIKVNDLEEQEE 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LH
Sbjct: 293 LGYTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAVLEPVRVAGTTVSRASLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I             +DIR+GD V++K+AG++IP+V+  + + R    +P+  P+ C
Sbjct: 353 NEDLIH-----------EKDIRIGDSVVIKKAGDIIPEVIRSLPDRRPEGTEPYHMPTHC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C   +VR L+ +      A RC     C AQ +E + HFVSR A NI+GLG + +   
Sbjct: 402 PSCGHELVR-LDGE-----VALRCINP-KCPAQLVEGMIHFVSRQAMNIDGLGTKIIMQL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           +++E     I+   D++ L +       ++      G+    NL ++I   +  SLE  +
Sbjct: 455 YENE----IIKDVGDLYYLTKDDLLPLERM------GEKKADNLLNAIEASKKNSLEHLL 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRH+G + ++ +A+ + +     +               L+ +  +GD +A +++ 
Sbjct: 505 FGLGIRHLGVKASQVIAERFETMDRLFKVTEE----------ELLEIHDIGDKLATSLIT 554

Query: 615 FYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +  N   I  +E L ++        I   E    SE   K +V TG L  + R +A +++
Sbjct: 555 YLNNKDIIALIEKLRRKNVNMTYEGIKTSEIQTDSEFNGKTVVLTGKLHNMTRTEASKWL 614

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
              GA  ++ +++ TD++I G++ GSKL KA++LG ++ +E++F+
Sbjct: 615 EAQGAKTTSSVTKNTDLVIAGEDAGSKLTKAEKLGTEVWSEDEFI 659


>gi|303247047|ref|ZP_07333322.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
 gi|302491473|gb|EFL51358.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
          Length = 693

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 249/724 (34%), Positives = 381/724 (52%), Gaps = 59/724 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   L  L  +I  HD  YY    P+I D+ YDAL R    +  A P+L   +DPN P  
Sbjct: 7   AAARLRELRAQIHEHDYRYYVLDDPVIEDAAYDALYRELRKLETAHPEL---DDPNSPTK 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFTLEPKID 135
           ++GG +  +     H +   SL+   + E+ R F+TR     +++    +  F ++PK D
Sbjct: 64  RVGGTVLPAFVSKPHRLAMYSLDNAMSEEEWRDFVTRAANKLEREGQPFTRTFWVDPKFD 123

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-------SLNIPEIIEVR 188
           G  + I YE G +  A  RGDG  GEDV+  +R +  +P  L       +L +P ++EVR
Sbjct: 124 GLALEIIYENGVYAGALTRGDGEVGEDVTENVRTVKNVPLDLRPHAVRANLPVPALLEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV +++ DF  LN+     G K +ANPRNAA+G +R+L+     +R L FF + +G   
Sbjct: 184 GEVVMTRQDFYELNERQREQGGKIFANPRNAAAGSVRQLDSKISASRPLTFFAYAIGAQD 243

Query: 248 EIFAKGQYE----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              A   +     ++  +  LG PV    + A     +  Y+  M   R  LP++IDG+V
Sbjct: 244 WAGADPGWTTHSGIMAGLGKLGLPVAREGKVAGE-DAVYPYFKTMGVRRPDLPFEIDGVV 302

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD  + Q+ LG   R+PR+ I+ KF   +A T L  I++Q+GRTG+LTPVA LEPV++
Sbjct: 303 VKVDSLADQEALGFTGRAPRFAIALKFPAHEAETVLKRIEVQVGRTGVLTPVAILEPVSL 362

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ ATLHNED IK            +D+R GD V+V+RAG+VIP+VV ++  +R  
Sbjct: 363 AGVTVSRATLHNEDEIK-----------AKDLRAGDTVVVRRAGDVIPEVVRVVPEKRPA 411

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+PF FP  CP C S  VR      G+  AA RC   LAC A     + +FVS+   +I
Sbjct: 412 DAEPFPFPHICPSCHSPAVR----APGE--AAWRCV-NLACPAMLRRGIAYFVSKSGLDI 464

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EG+G + +            ++ PAD+F L         ++       + S  N   ++ 
Sbjct: 465 EGIGNKWVKTLIDKG----MVKTPADLFNLTEMDLIPMERM------AEKSAANFVAAVE 514

Query: 544 K-RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           K ++N +L + I +LG+R VG   AR+LA+++       ++++ + A  ++D   L  +P
Sbjct: 515 KAQQNATLAKLIAALGMRQVGTRTARTLAEHF-------RDLDGLAAATSED---LTALP 564

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQ 659
            +G  +A +I EF+ N  N   +E   +     +   +  V  E   +  KK +FTGTL 
Sbjct: 565 DIGPEVAGSIREFFDNAANRELIERFRQIGLWPVSEPKTAVPPEATPLGGKKFLFTGTLP 624

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + R KA+  V   G  V   +S+K D ++VG +PGSKL KAQ LG+ I++ E F  LL 
Sbjct: 625 GMSREKAEALVEAAGGRVMKSISKKLDYLVVGADPGSKLAKAQSLGITILDAEAFQELLG 684

Query: 720 QYNT 723
           + N 
Sbjct: 685 EENA 688


>gi|57234606|ref|YP_181338.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195]
 gi|123759715|sp|Q3Z8W1|DNLJ_DEHE1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57225054|gb|AAW40111.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195]
          Length = 677

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 248/720 (34%), Positives = 378/720 (52%), Gaps = 65/720 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E+ +L +EI+ H+  YY    P I DSEYDAL RR   +  A P+L  ++ P     +
Sbjct: 5   RTEIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTADSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136
           +G E   +   V H  P LSL   ++  +L  +  R+ +       N+ F    EPK+DG
Sbjct: 62  VGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYLRVKKLL----GNAAFQIDCEPKMDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  GKF   A RGDG  GE+++  +R I +IP     + P + E+RGEVY+ K 
Sbjct: 118 LAVALTYRNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVYLPKE 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQ 254
            F  LN E    G   +ANPRNAA+G LR+L+P+    R L+ F++ LG   + +     
Sbjct: 178 GFAKLNRERADKGLSLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYAEDSLLPDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +++L+    LGF +N   R  NT      YY EM   R +LPY+ DG+V+KVD  SLQ++
Sbjct: 238 WQILEYFSRLGFKINPRNRLVNTLEEAKEYYREMAENRDSLPYEADGVVFKVDSVSLQQK 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG+  R PRW I++KF  +Q +T L  I I +GRTG L P A LEPVN+GG ++  A+LH
Sbjct: 298 LGDAGREPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF---- 430
           NED          ++R  +DIR GD V+++RAGEVIP+VV  ++ +R P+++PFS     
Sbjct: 358 NED---------DILR--KDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETL 406

Query: 431 --PSF----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             P      CP+C   + R          A H C   ++C AQ   +L+HFVSR   +I 
Sbjct: 407 FNPKLSRPACPVCGGEIYRPAGE------AMHYC-ANVSCPAQFERQLEHFVSRGTMDIR 459

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + L      E    ++   +D++ L      +   +  +   G+ S  N+  +I  
Sbjct: 460 GIG-ESLSVILAQEGLVKNV---SDLYYL------TAADLLKLPRMGEKSADNIIKAIAD 509

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++  L+R IF LGIRHVG E A  L+  Y           +I A        L  +P +
Sbjct: 510 SKSRPLDRVIFGLGIRHVGNETAALLSSRY----------GDIWALAGAGLDELQTIPDI 559

Query: 605 GDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           G  IA +I  ++   +NI  +  L    +K  S     ++    S +E    V TG L  
Sbjct: 560 GAKIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSYKPLPLSGVE---FVVTGKLDS 616

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R +AQ+ +  LG      +++ T  ++VG + GSKL KA+ +GVK ++E++F+ +L+Q
Sbjct: 617 LSREEAQQKIRSLGGTAKDNVTKATRYLVVGADAGSKLAKARSMGVKELSEQEFINMLEQ 676


>gi|304415222|ref|ZP_07395930.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
           LSR1]
 gi|304282928|gb|EFL91383.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
           LSR1]
          Length = 674

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 240/707 (33%), Positives = 396/707 (56%), Gaps = 65/707 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + +H+  Y+    P I D+EYD L      +   +P+L  ++ P   +    G + L++F
Sbjct: 15  LQHHEYQYHVLDNPEIPDAEYDRLMNELRELETQYPELICADSPTQRV----GAVPLNIF 70

Query: 88  -KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
            +V H  P LSL+ +++ +    F  R++      ++  + F  EPK+DG  +++ YEKG
Sbjct: 71  EQVKHESPMLSLDNVFDEKSYLAFHQRLHNRLNLTEE--LAFCCEPKLDGVAVSLLYEKG 128

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           + V AA RGDG  GE+++A +R I TIP R+   +IP+ IE+RGEV++    F   N+  
Sbjct: 129 ELVRAATRGDGSIGENITANVRTIRTIPLRLRGDDIPQQIEIRGEVFMPLIGFAQFNEAA 188

Query: 206 -IAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIFAKGQYEMLQKMR 262
                +K ++NPRNAA+G LR+L+P     R L+FF +G+G        +   + L + +
Sbjct: 189 RHKAEKKFFSNPRNAAAGSLRQLDPRITAKRPLDFFCYGMGLLKGGALPQHHLQRLLQFK 248

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
             G PV+N +++      I+++Y  ++  R  L +DIDG+V KVD+ SLQ++LG  AR+P
Sbjct: 249 AWGLPVSNQIKRCIGSDQIIAFYRHLEQQRDRLDFDIDGVVIKVDDLSLQERLGFSARAP 308

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW  + KF  ++  T++  ++ Q+GRTG +TPVARLEP+ + G +++NATLHN D IK L
Sbjct: 309 RWATAFKFPAQEKMTQVRQVEFQVGRTGAITPVARLEPIQLAGVMVSNATLHNADEIKRL 368

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                      D+ +GD V+++RAG+VIPK+V +++N R  +AQ  SFP  CP+C S   
Sbjct: 369 -----------DLHIGDTVIIRRAGDVIPKIVSVVMNARPLEAQEVSFPLHCPVCGS--- 414

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
            D+    G+ +A  RC+G L C+AQ+ + LKHFVSR A +++G+G + ++     E    
Sbjct: 415 -DIERLEGETIA--RCSGALLCTAQRKKMLKHFVSRRALDVDGMGDKIIEQLVTKE---- 467

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKR-RNISLERFIFSLG 558
            ++ PAD+F L          +E ++G    G  S  NL  ++ KR + +          
Sbjct: 468 YVKHPADLFHL---------TVEKLMGLNRMGAKSAHNLIAALEKRNKRLXXXXXXXXXX 518

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
            R VG   A +LA ++ +  +            + D  +L +V  VG ++A  ++ F   
Sbjct: 519 XREVGETTAANLAAHFRTLSHL----------RSADVETLQQVADVGVVVATHVINFLAQ 568

Query: 619 PRN---ICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             N   I A+EA++    P    ++     N+ +   +K +V TG+L  + R  A++ + 
Sbjct: 569 EHNQHVINALEAVIHWPEPEQIIAVAEESNNIFT---SKTIVLTGSLNSLSRENAKDRLV 625

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            LGA VS  +S+KTD++I G+  GSKL KAQ+LG+K++ E++ L LL
Sbjct: 626 ALGAKVSNSVSKKTDLVIAGEGAGSKLIKAQELGIKVITEDEMLRLL 672


>gi|146307768|ref|YP_001188233.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina ymp]
 gi|190359273|sp|A4XVY5|DNLJ_PSEMY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145575969|gb|ABP85501.1| DNA ligase, NAD-dependent [Pseudomonas mendocina ymp]
          Length = 786

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/659 (35%), Positives = 354/659 (53%), Gaps = 50/659 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +S L  E+  H+  YY   +P + D+EYD L R   A+    P+L     P  P  
Sbjct: 4   AAQRISELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELV---TPESPTQ 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130
           ++GGE   +  +V H +P LSL   +  +DLR F   +         +       + ++ 
Sbjct: 61  RVGGEALSAFGEVRHEVPMLSLGNAFEEDDLRAFDRSVQSGLGLAGGDLFGGGAEVEYSC 120

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           EPK+DG  +++RYE G+ V  A RGDG +GED+SA +R I  +P ++     P+++EVRG
Sbjct: 121 EPKLDGLAVSLRYENGQLVRGATRGDGSTGEDISANVRTIRNVPLKLQGEGWPQVLEVRG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV++ K  F  LN      G K +ANPRNAA+G LR+L+P    +R L F  +G+G+ S 
Sbjct: 181 EVFMPKAGFEELNARQAEAGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQVSG 240

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q  MLQ+++  G P++  ++ A      + YY ++   R +L YDIDG+V+KV+ 
Sbjct: 241 ELPGTQVAMLQQLKAWGIPISRELKLAKGVEACLDYYRDIGQRRMSLAYDIDGVVFKVNN 300

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+QLG RAR+P W I+HKF  ++  T LLD++ Q+GRTG +TPVARL+PV + G ++
Sbjct: 301 IEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
            NATLHN D +  L            + +GD V+++RAG+VIP+V+ ++   R  DA+P 
Sbjct: 361 ANATLHNMDEVARL-----------GVMIGDTVIIRRAGDVIPQVMAVVPERRPADARPV 409

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAA------HRCTGGLACSAQQLERLKHFVSRDAFN 482
             P  CP+C S V R    K  K  A+      +RC G L+C AQ  + + HFVSR A +
Sbjct: 410 HIPEQCPVCGSAVERTQLIKRSKGKASVSEGSVYRCVGRLSCQAQLKQAIIHFVSRRAMD 469

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG + ++     +     I  PAD++ L   Q      I  + GF +VS   L  +I
Sbjct: 470 IEGLGDKTIEQLVDEK----LIGSPADLYKLTYEQ------IIGLEGFAEVSSNKLLAAI 519

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +  SL RFI++LGI  VG E A+ LA+   S +   Q +  ++ +          +P
Sbjct: 520 ENSKRPSLARFIYALGIPDVGEETAKVLARSLASLERVRQALPEVLTY----------LP 569

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            +G  +A  I  F+++  N   + ALL E    + + E  +S+E  +      G L K+
Sbjct: 570 DIGLEVAHEIHSFFEDAHNQQVISALLGECGLEL-QDEGELSAEF-SAVATLGGMLDKL 626



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 14/155 (9%)

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRNICAVEALLKEV 632
           + Q  A+   ++    N DWL + +   + +  A+A+ EF+    N +   A+E  L+E 
Sbjct: 635 AAQKLAERFGSLEGVLNGDWLDMRQA--LPERQAKAVREFFDETANAQRARAIEQQLRE- 691

Query: 633 SPSIGRH---EKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
               G H   EK V+    +  +  V TGTL+ + R  A+E +  LGA V+  +S KT  
Sbjct: 692 ---FGMHWESEKKVAEGLPLAGQTWVLTGTLEVMSRDVAKEKLESLGAKVAGSVSAKTHC 748

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++ G   GSKL KA +LGVK+++E QFL  L+ Y 
Sbjct: 749 VVAGPGAGSKLAKASELGVKVLDEAQFLEQLKSYG 783


>gi|197121145|ref|YP_002133096.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K]
 gi|254781542|sp|B4UDH6|DNLJ_ANASK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|196170994|gb|ACG71967.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K]
          Length = 687

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 242/715 (33%), Positives = 373/715 (52%), Gaps = 58/715 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L   I   D  YY   +P++ D+EYD L     A+    P+L  ++ P     ++ G  +
Sbjct: 13  LRDRIRAADHAYYVLDQPLLADAEYDRLMHELQALEADHPELVTADSPT---QRVSGAPS 69

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               +V H  P LSL  + + ++L++F  R+ R     D   + + +EPK+DG  + + Y
Sbjct: 70  ERFERVVHREPMLSLGNVQSDDELQEFDARVRRLLGLPDGEPVGYVVEPKLDGLAVELVY 129

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPT------IPRVLSLNIPEIIEVRGEVYISKND 197
             G F   + RGDG +GEDV+A +R +        +P  L    P  +EVRGEV + K  
Sbjct: 130 RDGAFTSGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGRPPPRVEVRGEVLLFKEH 189

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N +++  G  P+ANPRNAA+G LR+L+      R L+F  +      +   +  +E
Sbjct: 190 FEAMNRQLVRAGEAPFANPRNAAAGTLRQLDWRVTARRPLSFIAYEALLPGDDPWRTHWE 249

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+++   GF  N   R+      +++Y + M   R  LPYD DG+V KVD+   +++LG
Sbjct: 250 KLEELAAWGFETNAENRRCRGLAEVLAYRDRMAERRFELPYDTDGIVVKVDDLDWRRRLG 309

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++ PRW ++ K+  ++ +TR+  I   +GRTG+LTPV   +PV + GA++  ATLHNE
Sbjct: 310 AASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLSGAMVARATLHNE 369

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++            +DI  GD VLV+RAGEVIP+VV  +   R    QPF FP+ CP+
Sbjct: 370 DEMR-----------RKDILEGDWVLVRRAGEVIPEVVKPLPERRTGAEQPFRFPAECPV 418

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-------- 488
           C +RVVR+   K       +RCTG  AC AQ + RL HF  R A +IEGLG+        
Sbjct: 419 CGARVVREEGEKV------YRCTGA-ACPAQLVGRLCHFAQRRALDIEGLGEKLAAGLVE 471

Query: 489 --QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
             Q  DF   ++  A    +   +F+  R++Q +    E      + S  N+  ++ + R
Sbjct: 472 RGQVKDF---ADLYAVPFEVWQQLFSRPRKEQDAGAARE----LPEKSAQNMVAALERSR 524

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF+F+LGI  VG   A +LA+++            +    + D  +L  V  VG 
Sbjct: 525 KTTLRRFLFALGIPQVGEATAATLARHF----------GGLARVMDADEEALKGVRDVGP 574

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             A  I  + Q P+N   VE LL   V+P     E         K +V TG L  + R  
Sbjct: 575 ETAAEIRAWTQEPQNRRVVERLLAAGVTPEAEVVE--ARGPFAGKTVVLTGGLSTMSRDD 632

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  + + G  VS  +SRKTD+++ G++ GSKLEKA+ LGV+I  EE+F+ LL++
Sbjct: 633 AKAEIERRGGRVSGSVSRKTDLVVAGEDAGSKLEKARSLGVRIAGEEEFVRLLKE 687


>gi|300173629|ref|YP_003772795.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811]
 gi|299888008|emb|CBL91976.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811]
          Length = 681

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 255/720 (35%), Positives = 396/720 (55%), Gaps = 61/720 (8%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +L PIE LS E A+ E++ L+ ++  +   YY+   PI+ D  YDAL  R  A+   FP 
Sbjct: 4   ELKPIEKLSREAAQHEIAKLQDDLRQYGIAYYEQDAPIVEDYIYDALYARLVALETVFPQ 63

Query: 65  LARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                +P+ P   +GG M  S L KV H  P LSL  ++++E+L ++ +R  +    + D
Sbjct: 64  FI---NPDSPTQNVGGAMTKSGLEKVVHPAPMLSLGDVFSLEELDEWDSRTTKSLGFQSD 120

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  + + Y  GK V A+ RG+G  GEDV+A ++ I  IP+VL  N P 
Sbjct: 121 ----YNLELKIDGLAVALTYVSGKLVQASTRGNGTIGEDVTANVKMIKAIPQVL--NEPI 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
            IEVRGE+Y+ K+ F  LN +    G  P+ANPRNAA+G LR+LN   +  R L+ FV+ 
Sbjct: 175 TIEVRGEIYMPKSSFSTLNKQRELDGLAPFANPRNAAAGSLRQLNAKIMKQRNLSAFVYY 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
             +   + +  Q + L++   LG P +   R       I +Y  E    R  L Y IDG+
Sbjct: 235 TAEPDILGSTTQSDALKRFSSLGLPTDTHNRVMTKMADINNYIAEYTVTRDNLAYGIDGV 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV++   Q  LG   + PRW I++KF  ++A T +  I+  +GRTG +TP A ++PV 
Sbjct: 295 VVKVNQLDDQLDLGNTVKIPRWAIAYKFPPEEALTVVRAIEWTVGRTGAVTPTAVMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+LHN DY+             + +R+ D V + +AG++IP++  +I+++R 
Sbjct: 355 LAGTTVQRASLHNPDYLN-----------EKGVRLEDTVTLHKAGDIIPEIGQVILSKRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             ++ +  P FCP CQS +V       G++  A RC     CSAQ  E L HF SR+A N
Sbjct: 404 TGSEAYEIPVFCPACQSELVH----IEGEV--ALRCINPF-CSAQIQEGLTHFASRNAMN 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG+G + ++   K++     I+  A I+ L   Q  S  K      F + +V NL  SI
Sbjct: 457 IEGMGPKVIEQLLKAD----YIKDVAAIYRLTSEQLFSLDK------FKEKAVNNLLMSI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + ++ SLE+ +F LGIR VGA+ AR LA  + + Q+ A      IA+          + 
Sbjct: 507 ARSKDNSLEKLLFGLGIRMVGAKAARVLAGKFKNLQSIATATTEDIAN----------ID 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIE------NKKLVFT 655
            +GD IA++IV+++  P +    + LL+E++ + G ++K +S  EI+      +K++V T
Sbjct: 557 GIGDRIARSIVQYFDMPES----KQLLQELTDA-GVNQKYLSDVEIDENNFFYHKRIVLT 611

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G L+K  R    +++   GA VS  +S KTD++I G+  GSKL KA +LGV    E++F+
Sbjct: 612 GKLEKNSRSMVTKWLQDHGASVSGAVSAKTDLLIAGEAAGSKLRKANELGVPTWTEQEFI 671


>gi|239994967|ref|ZP_04715491.1| DNA ligase, NAD-dependent [Alteromonas macleodii ATCC 27126]
          Length = 593

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/609 (37%), Positives = 349/609 (57%), Gaps = 47/609 (7%)

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
           KD  ++ F+ EPK+DG  ++I YE G+ V AA RGDG  GE+++A +R I  +P  L   
Sbjct: 22  KDSATLDFSCEPKLDGLAVSILYENGELVRAATRGDGQVGENITANVRTISNVPLTLRGE 81

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLN 237
           + PE +EVRGEV++ +  F  LN+     G K +ANPRNAA+G LR+L+ + IT  R L 
Sbjct: 82  HYPERVEVRGEVFMPREGFAKLNEHQKETGGKVFANPRNAAAGSLRQLD-SKITAKRPLM 140

Query: 238 FFVHGLG---KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           F+ + LG     S        E L+++   G P+   +  A    G ++YYN +   R +
Sbjct: 141 FYAYSLGVVQPESFELPTTHSERLKQLGNWGLPLCPDIDTAEGGKGCLAYYNHILEKRDS 200

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPYDIDG+V+KV+   LQ  LG  AR+PRW I+ KF  ++  T+LLD++ Q+GRTG +TP
Sbjct: 201 LPYDIDGVVFKVNRIDLQDALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITP 260

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARLEPV +GG  ++NATLHN+D I  L            ++VGD V+++RAG+VIP+VV
Sbjct: 261 VARLEPVFVGGVTVSNATLHNQDEISRL-----------GVKVGDTVVIRRAGDVIPQVV 309

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            ++   R       +FPS CP+C S+V +  +       A  RCTGGL C+AQ+ + LKH
Sbjct: 310 SVVEANRTGSETDITFPSQCPVCDSQVEKLEDE------AVARCTGGLICAAQRKQALKH 363

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F SR AF+I+GLG + +D    ++     +  PAD FTL      S   +  +    + S
Sbjct: 364 FASRKAFDIDGLGDKLVDQLVDAD----LVHSPADFFTL------SLGDVVGLERMAEKS 413

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
            + L  S+   +  +L +F+++LGIR VG   A +LA ++ + +          A     
Sbjct: 414 ASKLLASLEASKQTTLAKFLYALGIREVGEATAANLAAHFETLE----------AIREAS 463

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKL 652
             +L+ V  VG+++A  I  F+    N   ++ALLKE    P+I + + + +  +E K  
Sbjct: 464 LEALVEVQDVGEVVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDSD-NLPLEGKTC 522

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL ++ R  A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+L V++ +E 
Sbjct: 523 VITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELDVEVWDEA 582

Query: 713 QFLFLLQQY 721
             +  L ++
Sbjct: 583 ALIAFLSEH 591


>gi|254480787|ref|ZP_05094034.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
 gi|214039370|gb|EEB80030.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
          Length = 677

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 250/699 (35%), Positives = 388/699 (55%), Gaps = 59/699 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD   R+       FP+L  +ED   P  ++G +      +VTH +P
Sbjct: 24  YYVLDDPSVPDAEYDRYLRQLQGFEEQFPELV-TED--SPTQRVGSKPLSQFSQVTHEVP 80

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+  ++  +L  F  R+ R    + D +I ++ EPK+DG  +++ Y  G     A R
Sbjct: 81  MLSLDNAFDATELVDFERRL-RDRLGEPDLAIEYSCEPKLDGIAVSLLYRDGILERGATR 139

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GED++  +R IP+IP  L  +  P+I+EVRGE+Y+    F  LN   +  G K +
Sbjct: 140 GDGTTGEDITQNVRTIPSIPLQLRGDGYPQILEVRGEIYMPLAGFDQLNRRALEKGEKVF 199

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY--EMLQKMRCL---GF 266
            NPRNAA+G LR+L+ + IT  R L    + +G    +   GQ   E    + CL   G 
Sbjct: 200 VNPRNAAAGSLRQLD-SRITAQRPLEMCCYSVG----LVQGGQLPPEHAAVLDCLHRWGL 254

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
            +N   +          YY  +   R +LPYDIDG+VYKV+    Q +LG  +R+PRW I
Sbjct: 255 RINAESQVVTGVQACEQYYESLAKRRDSLPYDIDGIVYKVNRLDQQSRLGFVSRAPRWAI 314

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           + KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++NATLHN D I+ L    
Sbjct: 315 ARKFPAQEEMTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNADEIERL---- 370

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                   +RVGD V+V+RAG+VIPKVV +++++R  D++   FPS CP+C S   R+ +
Sbjct: 371 -------GLRVGDFVVVRRAGDVIPKVVSVVLDKRPGDSRAVEFPSHCPVCNSATEREPD 423

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                  A  RC GGL C+AQQ   +KHF SR A +I+GLG + ++      D      +
Sbjct: 424 E------AVIRCMGGLVCAAQQKAAIKHFASRRAMDIDGLGDKLVEQMV---DEGLLENV 474

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            A +++L + Q  +  ++      G+ S  NL  ++   ++ SL RFIF+LGIR VG   
Sbjct: 475 -ASLYSLHKDQLMALERM------GEKSADNLLAALAASKDTSLPRFIFALGIREVGEAT 527

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A +LA+++ S+         ++A + +   SL+ V  VG ++A  + +F+ +   +   E
Sbjct: 528 ALNLARHFGSWP-------ELVAASEE---SLLDVDDVGPVVADHLRQFFDSTSGMAVAE 577

Query: 627 ALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           A L+E     P I    ++V   +  +  V TG L+ + R++A+  +  LGA V+  +S 
Sbjct: 578 A-LREAGVRWPDIEIAAESVLP-LAGQTWVVTGKLELMGRNEAKAALQTLGAKVAGSVSA 635

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           KT  ++ G   GSKL KAQ LGV++++E  F+ LL+Q+ 
Sbjct: 636 KTHCVVAGPGAGSKLAKAQDLGVEVIDEITFVALLEQHG 674


>gi|153003607|ref|YP_001377932.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5]
 gi|166215389|sp|A7H8A2|DNLJ_ANADF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152027180|gb|ABS24948.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5]
          Length = 699

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/730 (33%), Positives = 384/730 (52%), Gaps = 62/730 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A    + L   I   D  YY   +P++ D+EYD L R    I  A P+LA S+ P   
Sbjct: 8   DSAETRAAELRARILDADHAYYVLDRPVLADAEYDRLVRELAEIEAAHPELATSDSPT-- 65

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++ G  +    +V H  P LSL  I +  +L +F  R++R      D  + +  EPK+
Sbjct: 66  -QRVSGAPSERFERVVHREPMLSLGNIQSDGELDEFDARVHRLLGLAGDVQVGYVAEPKL 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP------TIPRVLSLNIPEIIEVR 188
           DG  + + YE G+ V  + RGDG +GEDV+A +R +        +P  L+  +P  +EVR
Sbjct: 125 DGLAVELVYEGGRLVQGSTRGDGVNGEDVTANLRTVGRTRANRGVPERLAGEVPPRVEVR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH------ 241
           GEV + K  F A+N +++  G +P+ANPRNAA+G LR+L+      R L+F  +      
Sbjct: 185 GEVLLFKEHFEAMNRQILRAGDEPFANPRNAAAGSLRQLDWRVTARRPLSFIAYEALVPG 244

Query: 242 ---GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
              G  +      +   E L+ +   GF  N    +      + +Y + M   R  LPYD
Sbjct: 245 AEPGGARAGPWAWRTHAEKLEALARWGFETNAENERCEGIAAVKAYRDRMAERRFALPYD 304

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DG+V KVD+   +++LG  ++ PRW ++ K+  ++ +TR+  I   +GRTGILTPV   
Sbjct: 305 TDGVVVKVDDLDWRRRLGAASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGILTPVVDF 364

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + GA+++ ATLHNED ++            +D+  GD +LV+RAGEVIP+VV  + 
Sbjct: 365 EPVRLSGAMVSRATLHNEDEMR-----------RKDVLEGDWILVRRAGEVIPEVVMPLK 413

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R  + +PF+FP+ CPIC ++VVR+   K       +RCTG  AC AQ + RL HF  R
Sbjct: 414 ERRTGEERPFAFPAECPICGAKVVREEGEKV------YRCTGA-ACPAQLVGRLTHFAQR 466

Query: 479 DAFNIEGLG-KQQLDF----FFKSEDPAFSIRIPA--DIFTLQRRQQTSTTKIENILGFG 531
            A +I+GLG K  L        K     +++  PA  ++F+  R+++    K E      
Sbjct: 467 RAMDIDGLGDKLALGLVERGLVKDFADLYAVPFPAWQELFSRPRKEERD-AKAE----LP 521

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
             S  N+ D++ + +  +L R +F+LGI  VG   A +LA+++        E+   +  +
Sbjct: 522 QKSAQNMVDALERSKATTLRRLLFALGIPQVGEATAATLARHF-------GELARFMDAS 574

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENK 650
            D   +L+ V  VG   A+ I  + + P+N   VE LL   V P+      +       K
Sbjct: 575 ED---ALLAVRDVGPETAREIRAWTEEPQNRRVVERLLAAGVRPAP--ETVDAGGPFAGK 629

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG L  + R  A+  + + G  VS  +SRKTD+++ G   GSKLEKAQ LGV+++ 
Sbjct: 630 TVVLTGGLAALSRDDAKAEIERRGGKVSGSVSRKTDLVVAGAEAGSKLEKAQALGVRVVG 689

Query: 711 EEQFLFLLQQ 720
           EE+FL +L++
Sbjct: 690 EEEFLRMLEE 699


>gi|312144161|ref|YP_003995607.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus']
 gi|311904812|gb|ADQ15253.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus']
          Length = 670

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 239/687 (34%), Positives = 396/687 (57%), Gaps = 50/687 (7%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+    P I D+E+D L +    +   FP+L  +   + P  ++GGE+     KV HS  
Sbjct: 27  YFVLDDPQISDAEFDKLMQDLLKLESQFPELVTA---DSPTQRVGGEVLDEFEKVEHSTE 83

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+  +N E+LR F  R+ +   ++D     + +E KIDG    IRY+ G F   A R
Sbjct: 84  MLSLDNSFNAEELRGFDQRVKKNTTERDYQ---YIVEHKIDGLSAVIRYQGGSFQLGATR 140

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           G+G  GE+++  ++ I ++P  L +     +E+RGE+Y+SK++F  +N++ +   +KP+A
Sbjct: 141 GNGEVGENITENMKTIRSLP--LKIEDKAELELRGEIYLSKSEFERINEKRLENEKKPFA 198

Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G +R+L+     +R L+  ++ L   S    +   E+   +   GF VN   +
Sbjct: 199 NPRNAAAGSVRQLDSKIAASRRLSILIYDLISHSNREFETHLEVFAYLEEQGFNVN-WHK 257

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
           +A+    ++    E +  R +L ++IDGLV K++  +L+++LG  ARSPRW I++KF  +
Sbjct: 258 KADDIGKVIEICQEWEEKRESLDFEIDGLVVKINNLNLREELGSTARSPRWAIAYKFPAQ 317

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           Q +TR+  I+I +GRTG LTP A LEPV I G+ ++ ATLHNED IK            +
Sbjct: 318 QKTTRVKSIEISLGRTGALTPTAVLEPVEIAGSTVSRATLHNEDEIK-----------RK 366

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR+GD VLV++AG+VIP+VV +I  +R    + F  P  CP+C ++V R   P+     
Sbjct: 367 DIRIGDIVLVQKAGDVIPEVVKVIKEKRDGCEKEFEMPDHCPVCGTKVKR---PEGE--- 420

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
           A  RCT  ++C AQ+ E++ HFVSRDA NIEG+G   +D   +++     I    D++ L
Sbjct: 421 AVTRCT-NISCPAQRKEKILHFVSRDAMNIEGVGPALVDQLLEND----LIDDYGDLYFL 475

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           ++        ++N+   G+ S  N+ D+I + ++    R I++LGIRHVG   AR+L+  
Sbjct: 476 KKHH------LQNLERMGEKSSQNVIDAIKQSKDREFFRVIYALGIRHVGLGAARTLSDN 529

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           Y S       I+ ++  +N++   L  +  +G +IA +I++F+   +N   + + L++  
Sbjct: 530 YSS-------ISQLMEASNEE---LEEIDEIGPVIADSIIDFFAEKQNRDLI-SRLRQAG 578

Query: 634 PSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
            ++ R       + +E  K VFTG+L    R + ++ V + G    + +S KTD +++GD
Sbjct: 579 INLSRENTEEKEKFLEGLKFVFTGSLNDFTRSEVKDLVEKAGGRSVSSVSSKTDYLVIGD 638

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           NPGSK +KAQ+LG+KI++E +F  LL+
Sbjct: 639 NPGSKYQKAQELGIKILSESEFKELLE 665


>gi|187928361|ref|YP_001898848.1| DNA ligase [Ralstonia pickettii 12J]
 gi|254781397|sp|B2UB00|DNLJ_RALPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187725251|gb|ACD26416.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12J]
          Length = 817

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 240/680 (35%), Positives = 365/680 (53%), Gaps = 67/680 (9%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E++ +   YY   +P + D EYD L R  +A+    P+L   + P+ P  ++GG + 
Sbjct: 24  LRAELNRYAHEYYVLDQPSVPDVEYDRLYRELEALETEHPEL---KTPDSPTLRVGGAVL 80

Query: 84  LSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMIT 140
                V H IP LS+  E        R F   + R     D D  + +  E K DG  I 
Sbjct: 81  PEFAAVRHVIPMLSIRTETDTTANGARAFDASVRRELGLDDTDPPVEYAAELKFDGLAIN 140

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKND 197
           +RYE+G  V AA RGDG +GEDV+  IR I  IP  LS    ++P+++EVRGEVY+ ++D
Sbjct: 141 LRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEVYMRRDD 200

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKGQ 254
           F  LN      G K + NPRN A+G +R+L+P     R L+FF +GLG+ +  +      
Sbjct: 201 FEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEVAGWKGMPGTH 260

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             ML  ++  GFPV+N         G+V ++  +++ R +LP+DIDG+VYKV+  +LQ++
Sbjct: 261 SSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAKRDSLPFDIDGVVYKVNSLALQRE 320

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG R+R PRW ++HK+  ++A T +  ID+Q+GRTG +TPVARL PV +GG  +TNATLH
Sbjct: 321 LGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARLVPVFVGGVTVTNATLH 380

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER------------- 421
           NED ++            +D+RVGD V+V+RAG+VIP+VV ++++ R             
Sbjct: 381 NEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVSVVLDRRPLDDVPGSDLFNP 429

Query: 422 --HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
              P   PF  P  CP+C S VVR+     G+ VA  RC+GGL CSAQ+ E ++HF  R 
Sbjct: 430 QQQPKYPPFELPKTCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAGRR 483

Query: 480 AFNIEGLGKQ------QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
             +IEGLG++      +LD+     D  + + +  D   ++RR           +  G +
Sbjct: 484 MMDIEGLGERYIDNLVELDYVHGIAD-LYKLTL-EDFLEMKRRADERDGVTPETVSAGKI 541

Query: 534 SVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           +     NL + I   +   L RF+F+LGIRHVG   A++LA +  S     +    ++  
Sbjct: 542 ATKWAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAMIRRAPAPLLLA 601

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIE 648
             D          VG  +A+AI +F+  P+N  A++ALL+      G H  N     ++E
Sbjct: 602 LPD----------VGATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHAPNAKLREKLE 651

Query: 649 NKKLVFTGTLQKIQRHKAQE 668
             +L  T  + K+   +A++
Sbjct: 652 PAELYATLGVPKLTATRAKQ 671



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 50/74 (67%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           ++ K +V TGTL  + R +A+  +   GA VS  +S+KTD ++ G++ GSKL KA++L V
Sbjct: 738 LDGKTVVLTGTLPNLTRDEAKAMLEAAGAKVSGSVSKKTDYVVAGEDAGSKLAKAEELNV 797

Query: 707 KIMNEEQFLFLLQQ 720
           K+++E   L LL++
Sbjct: 798 KVLDEAGMLALLKK 811


>gi|294661389|ref|YP_003573265.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|254781251|sp|C3L496|DNLJ_AMOA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|227336540|gb|ACP21137.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 671

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/711 (31%), Positives = 381/711 (53%), Gaps = 50/711 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQARKE+  L   ++YH+  YY+ ++P I D E+D L  +  A+ + FPDL     PN P
Sbjct: 4   EQARKEIKRLTALVAYHNKLYYEEAQPEISDYEFDQLLEKLIALENQFPDLRL---PNSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE +     V H  P LSL   ++ E++ +F+ R ++   +    +I F  E K 
Sbjct: 61  TQRVGGEPSKKFATVYHQYPMLSLSNTYSAEEVMQFVKRAHK---QLPGATIEFFCELKF 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYI 193
           DG  I++ Y++GK      RGDG  G+D++   + IP IP+++   ++P   EVRGE ++
Sbjct: 118 DGVAISLLYKEGKLDKVVTRGDGFKGDDITENAKQIPNIPQIIEHKDLPPAFEVRGEAFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
           S  DF  LN + +A G +P ANPRNA +G L+ L  T   R+L+ +++ L  T       
Sbjct: 178 SLADFEKLNRDRLAHGLEPLANPRNATAGTLKTLKSTGPKRWLDCYMYSLLSTDMDLPTH 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           +   +Q +    F V+   ++  T   +++Y    +S +++LP  IDG+V KV++   Q 
Sbjct: 238 EV-CIQWLEKWCFHVSPTYKKCRTLEEVMAYIEYWESAKNSLPVAIDGVVIKVNDTLQQN 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++K+  +  +T L  +D Q+GRTG++TPVA L+P+ + G ++  ATL
Sbjct: 297 KLGLTAKSPRWAIAYKYKPENLATILESVDYQVGRTGVITPVAHLKPILLAGTIVKRATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN         +G++ R   D+ +GD V +++ GE+IPK+    V++R  D++P  F + 
Sbjct: 357 HN---------AGEIQR--LDLHLGDTVFIEKGGEIIPKITGTDVSKRSLDSEPVKFVTH 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +V+          A + C     C  Q    LKHFV R A +I  +GKQ ++ 
Sbjct: 406 CPACGTELVKRYEK------ALYYCPNTKGCPYQLQGLLKHFVHRKAMDIRSIGKQTIEM 459

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     +  PAD+++L+ +       I ++ GF D++  N+   I   +    ER 
Sbjct: 460 LINRG----LVHTPADLYSLKYQD------IRSLEGFKDLATRNVLSGIESSKQRPFERV 509

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIRHVG  IA  + +YY           +I   +N     LI +P +G  IA ++ 
Sbjct: 510 LFALGIRHVGEVIADKITQYY----------TDIDTLSNATVEDLIAIPFIGTEIAHSVT 559

Query: 614 EFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +++NP N+  ++ L    L+   P +       S  +  K  V +GT Q  +R + +E 
Sbjct: 560 NYFENPENLALIDVLKQAGLQLSRPQLATVFATQSLPLSGKTFVISGTFQNFEREELKEL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + + G  +   +S K + +I+G+NPG  K+ +AQ LG+  +NE + L +L+
Sbjct: 620 IKKKGGGILTNISAKLNYLIIGENPGPGKVAQAQALGISTINETEILQMLE 670


>gi|332982281|ref|YP_004463722.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON]
 gi|332699959|gb|AEE96900.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON]
          Length = 665

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/707 (34%), Positives = 383/707 (54%), Gaps = 48/707 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + ++ L Q I +H+  YY    P I D+EYDAL R  + +   +P++     P+ P
Sbjct: 5   EDVIQRVNELRQIIEHHNYMYYVLDSPEISDAEYDALMRELEQLESKYPEII---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+++     V HS+P LSL  +++  ++R F  R+    +   +  + + LE KI
Sbjct: 62  TQRVGGQVSGQFQPVVHSVPLLSLNDVFSESEIRDFDRRV----RAALNEDVQYVLEVKI 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + + Y+ G F+  A RGDG  GEDV+A +R I +IP  L L +P  +EVRGEV++ 
Sbjct: 118 DGLSVALTYQDGLFIRGATRGDGFVGEDVTANLRTIRSIP--LRLKMPINVEVRGEVFMP 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN++    G   +ANPRNAA+G +R+L+P     R+L+ FV  L +      + 
Sbjct: 176 KKYFYKLNEQREKDGLPLFANPRNAAAGSVRQLDPAITAQRHLDIFVFNLQRIEGYAFET 235

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  ++  GF +   +   +T    +      +  R  LPY+IDGLV KV+    ++
Sbjct: 236 HVESLMFLKEQGFKIMPYLIPCDTIDEAIEQCRLWEGKRYELPYEIDGLVIKVNSLRQRE 295

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +++PRW +++KF  ++  + +  I +Q+GRTG+LTP A LEPV + G  ++ ATL
Sbjct: 296 ILGNTSKTPRWAVAYKFPAERKESIIKHIVVQVGRTGVLTPTAVLEPVRLAGTTVSRATL 355

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNEDYIK            +DIR+GD VLV++AG++IP+VV +I  +R  D + F  P  
Sbjct: 356 HNEDYIK-----------EKDIRIGDHVLVQKAGDIIPEVVSVIKEKRTGDERIFEMPDK 404

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C +  VR      G+  AA RCT G++C AQ    L HF SRDA +IEGLG   +  
Sbjct: 405 CPVCGADAVR----IDGE--AARRCT-GVSCPAQVERGLIHFASRDAMDIEGLGPAVVRQ 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               +     IR  ADI+ L+        K+E +   G  S  NL ++I   ++  L R 
Sbjct: 458 LLNKK----LIRDEADIYYLKYE---DLVKLERM---GPKSAQNLINAIQASKDRGLARL 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGI  VG   A  LA+ +           +I      D   L  +P +G  IA+++V
Sbjct: 508 LYALGIPLVGTRAASILAERF----------GDIYELMKADQAQLTAIPEIGPKIAESVV 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F++  +    ++ L           ++  ++ +     V TGTL K  R +A E +  L
Sbjct: 558 TFFKQEQTKDLIKRLETAGVRLTADKKQKGNAPLAGLTFVLTGTLSKYTREQATEIIEGL 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  V+  +S+KTD +I GD PGSKL+KA QLGVK+++E +F +L+ Q
Sbjct: 618 GGKVTGSVSKKTDYVIAGDGPGSKLDKALQLGVKVIDENEFEWLIGQ 664


>gi|238026897|ref|YP_002911128.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
 gi|237876091|gb|ACR28424.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
          Length = 747

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 257/769 (33%), Positives = 390/769 (50%), Gaps = 104/769 (13%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q  +  + L QE+   +  YY   +P +LD+EYD L R    I    PD      P+ P 
Sbjct: 13  QPSERAAWLRQELERANHAYYVLDQPELLDAEYDRLFRELQQIEAEHPDFI---TPDSPT 69

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTL 130
            ++GGE       V H  P LSL   +  ED+  F  R+     K  D       + +  
Sbjct: 70  QRVGGEAADGFTPVLHDAPMLSLNNGFTDEDIAAFDKRVADALGKAVDLAGTAEPVEYAC 129

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRG 189
           E K DG  I++RY  GKF  AA RGDG +GEDV+  +R I +IP  L   + P +++VRG
Sbjct: 130 ELKFDGLAISLRYVHGKFTQAATRGDGTTGEDVTENVRTIKSIPLTLKGKHPPALLDVRG 189

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247
           EV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+ + +T  R L+FF +G+G   
Sbjct: 190 EVLMYKRDFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKVTAQRPLSFFAYGIGVLD 248

Query: 248 EIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  +  +L     LG PVN          G++ ++ ++   R  LPYDIDG+VYKV
Sbjct: 249 GAPMPDTHSGLLDWYESLGLPVNRERAVVQGAEGLLDFFRKVGEKREALPYDIDGVVYKV 308

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +    Q +LG  +R+PR+ ++HKF  ++A TRL+ I++Q+GRTG +TPVARLEPV +GGA
Sbjct: 309 NRRDEQDRLGFVSRAPRFALAHKFPAQEARTRLVAIEVQVGRTGAITPVARLEPVFVGGA 368

Query: 367 LITNATLHNEDYIKGLD------------------------------------------- 383
            +TNATLHNED ++  D                                           
Sbjct: 369 TVTNATLHNEDEVRRKDIRVGDTVIVRRAGDVIPEVVGRDGPHAMQVRVRFRGVRTVARR 428

Query: 384 -------ASGKVMR-GGRDIRVGDRVLVK-RAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
                  +SG+ M    R ++  DR  ++ R G + P + + +  E      PF  P+ C
Sbjct: 429 NRLRAAASSGRPMTWKPRLLKPTDRRGIRVRRGCLRPSLFEFVEQE------PFRMPTEC 482

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C SR+ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D  
Sbjct: 483 PVCGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 536

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +R PAD+F L          +  +  F + S  NL DS+ K R+ +L RFI
Sbjct: 537 VEQN----LVRTPADLFHL------GFATLAALDRFAEKSAQNLLDSLEKARHTTLARFI 586

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIRHVG   A+ LAK++ + Q       + +   ND          VG ++A+++ +
Sbjct: 587 YALGIRHVGESTAKDLAKHFGALQPIMDASIDALLEVND----------VGPVVAESLHQ 636

Query: 615 FYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F+    N   +  L ++V     P   R  + V   +  K +V TGTL  + R +A+  +
Sbjct: 637 FFAEEHNRTVIAQLREKVDWPEGPPAPREPQGV---LAGKTVVLTGTLPTLSRDEAKALL 693

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 694 EAAGAKVTGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMHQLLK 742


>gi|119503165|ref|ZP_01625249.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
 gi|119460811|gb|EAW41902.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
          Length = 673

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/697 (33%), Positives = 374/697 (53%), Gaps = 57/697 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY+   P + DSEYD        +   FP L  ++ P     ++G         V H +P
Sbjct: 24  YYRNDAPTVSDSEYDRTLLALRELEQKFPHLVSADSPT---QRVGAAPLEGFETVVHRLP 80

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+  +N +DL  F  R+    ++ D   + +  EPK+DG  ++I +++G+   AA R
Sbjct: 81  MLSLDNAFNADDLLDFDRRVR---ERLDGAQVRYACEPKLDGIAVSIVWQEGELTLAATR 137

Query: 155 GDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GE+++  +R I ++P R+   NIP  +E RGE+++ +  F A N      G KP+
Sbjct: 138 GDGRTGENITQNVRTIDSVPLRLSGENIPRYLEARGEIFMPRAGFEAFNARARRDGGKPF 197

Query: 214 ANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAK--GQYEMLQKMRCLGFPVN 269
            NPRNAA+G LR+L+ + ITR   L+F  +GLG    +        E + ++   G P++
Sbjct: 198 VNPRNAAAGSLRQLD-SSITRRRPLSFCAYGLGYVEGMSGALLSHTEAMAQLNQWGLPIS 256

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
              R      G   YY ++  +R  L +DIDG+V+KVD F+ Q++LG  +R+PRW I+ K
Sbjct: 257 EHSRSVPGIDGCERYYEDLSQVREGLGFDIDGIVFKVDTFAEQERLGFVSRAPRWAIARK 316

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           F  ++  T +L ++ Q+GRTG +TPVARL+PV +GG  ++NATLHN D I  L       
Sbjct: 317 FPAQEEMTVVLGVEFQVGRTGAVTPVARLDPVFVGGVTVSNATLHNADEIARL------- 369

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
                I+VGD V+V+RAG+VIP+V  ++V+ R P A+  +FP  CP C S +VR+     
Sbjct: 370 ----GIKVGDTVIVRRAGDVIPQVAGVVVDRRLPQAEDVAFPDSCPACDSVLVREPGE-- 423

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
               A  RC  G AC AQ+   ++HFVSR A +I+G G++ +D     +     I+  +D
Sbjct: 424 ----AVWRCDAGSACPAQRRAAIEHFVSRRAMDIDGCGEKIIDQLVDLD----LIKTASD 475

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
           ++ L    Q +   +E +   G  S  NL  +I   +N +L RFI++LGIR VG   AR 
Sbjct: 476 LYEL---SQDTLAGLERM---GTKSAKNLQAAIEDSKNTTLSRFIYALGIREVGETTARQ 529

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           LA+Y+ +        +  +    D          VG I+A  +  F+ +P     + +L+
Sbjct: 530 LAEYFGALAPLFTATDEQLQEVED----------VGPIVAGHLQRFFADPGRQEMINSLI 579

Query: 630 KE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
                  +P +   +  +S     +  V TG L+++ R +A+E +   GA VS+ +S KT
Sbjct: 580 SHGVYWPAPEVQIGDLPLS----GQTWVVTGKLEQMSRDQAEERLRVFGAKVSSSVSGKT 635

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             ++ G   GSKL+KA  L V +++E +F+  ++ + 
Sbjct: 636 SCVVAGPGAGSKLKKAHSLEVSVIDEAEFIIQMEGWQ 672


>gi|319787332|ref|YP_004146807.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1]
 gi|317465844|gb|ADV27576.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1]
          Length = 788

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 260/802 (32%), Positives = 422/802 (52%), Gaps = 128/802 (15%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L + I   +  Y++   P I D++YDAL R  +A+    P+LA +ED   P  ++G  
Sbjct: 12  AELRRRIEDANRRYHELDAPDITDAQYDALVRELEALEREHPELA-AED--SPTRRVGAT 68

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
            +     VTH++P LSL   +  E++  F+ RI R   +++D  + F+ EPK+DG  I++
Sbjct: 69  PSGRFAAVTHAVPMLSLGNAFTDEEVADFVRRI-RQRLEREDGDLAFSAEPKLDGLAISL 127

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLA 200
           RYE G FV  A RGDG +GEDV+A +R I  IP  L+    P ++EVRGEVY+ + DF  
Sbjct: 128 RYEDGVFVQGATRGDGATGEDVTANLRTIGDIPHQLAGKGWPRVLEVRGEVYMGRADFER 187

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTSEIFAKGQYEM 257
            N+     G K  ANPRN A+G LR+ +P     R L+FF +G+G  +  E+        
Sbjct: 188 WNEHARLHGGKVLANPRNGAAGSLRQQDPKITAQRPLSFFAYGVGLVEGGEL-PPSHSAT 246

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+++R  GFPV++ V+      G++ YY  +   R  LP+DIDG+VYK+D+   Q+++G 
Sbjct: 247 LRQLRDWGFPVSDLVQVVRGLDGLLGYYRHIGEARDGLPFDIDGVVYKLDDQEGQREMGF 306

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW I+HKF  ++ +T +  +++ +GRTG +TP A ++PV +GG  +T ATLHN D
Sbjct: 307 VSRAPRWAIAHKFPAQEQTTVVESVEVSVGRTGAVTPWALMQPVLVGGVTVTRATLHNAD 366

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           ++  LD           +R GD V+V+RAG+VIP+VV +++++R PDA+P+S P+ CP C
Sbjct: 367 HVARLD-----------VRNGDTVIVRRAGDVIPEVVQVVIDQRPPDARPWSMPATCPAC 415

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---QQLDFF 494
            S VVR+      +  A  RC+G L+C AQ ++ + HF SR A +I+GLG+   + L  F
Sbjct: 416 GSEVVRE------EGAAVWRCSGELSCPAQLVQSVFHFASRRAMDIDGLGERYIESLAEF 469

Query: 495 FKSEDPAFSIRIPAD-IFTLQRR--QQTSTTKI---ENILGFGDVS---VTNLYDSINKR 545
               D +   R+  D +  ++RR  ++  TT +   ++ +  G V+     NL  +I+  
Sbjct: 470 GYLRDVSDLYRLTLDDLLEMKRRADEREGTTPVAPAKSGVKSGKVATRWADNLLAAIDTS 529

Query: 546 RNISLERFIFSLGI---------------------RH-----------VGAEIARSLAKY 573
           RN +L RF+++LGI                     RH           +G E+AR+L  +
Sbjct: 530 RNTTLARFLYALGIQHVGESTAKALAQWLGDLELIRHLPWPLFRRLPDIGGEVARALGHF 589

Query: 574 YLSYQNFAQEINNII--------AHNND-------------------------------- 593
           +    N A  I+ ++        +H  D                                
Sbjct: 590 FDQPGNQAV-IDRLLERGVRIGDSHAPDPRLGATLDLASLLADLEIPKITPVRAAQLASA 648

Query: 594 -DWLSLIRVPLVGDIIA-------QAIVEFYQNPRNI------CAVEALLKEVSPSIGRH 639
            D  +L+  PL   + A        A+V + + P N          +A ++ + P+    
Sbjct: 649 FDAQALVDAPLHNLVTAGLPPETASALVAWLEAPGNAELLLRSAQAQARVRALLPAA--- 705

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           +   S  +E   +V TGTL  + R +A+E +  LGA  +  +S+KT  ++ G+  GSKL 
Sbjct: 706 DAVASGPLEGMTVVLTGTLSSMSRDEAKEKLEALGAKAAGSVSKKTSFVVAGEAAGSKLA 765

Query: 700 KAQQLGVKIMNEEQFLFLLQQY 721
           KA +LG+++ +E + L  L+Q+
Sbjct: 766 KAGELGIEVWDEARLLAFLEQH 787


>gi|199597353|ref|ZP_03210784.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001]
 gi|199591869|gb|EDY99944.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001]
          Length = 674

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 254/723 (35%), Positives = 391/723 (54%), Gaps = 65/723 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A  E++ L ++++     YY    P + D+ YD   R   A+  AFP L  
Sbjct: 5   PAAQFTLEEAEAEVAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLVT 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    +++ 
Sbjct: 65  ---PDSPTQQVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QANVGHAVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE G+ V  + RGDG+ GEDV+  +  I ++P+  +L  P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNIGEDVTKNVLTIASVPK--TLKRPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245
           RGE Y+ K  F  LN    A G  P+ANPRNAA+G LR+LNP  IT  R L+ F++ L  
Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPK-ITAGRELDTFIYTLID 234

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K Q+E +  M+ LGF  N     A+    I +Y  +  S R  LPY IDG+V K
Sbjct: 235 ADRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G
Sbjct: 295 VNDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V ER  + 
Sbjct: 355 TTVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVKERPANT 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P   P  CP C  ++V  L+ +      A RC   + C AQ  E+L HF SR+A NI+G
Sbjct: 404 PPAPIPEKCPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDG 456

Query: 486 LGKQ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           LG +   QL           + ++  D+  L R    + T +E +  F + S+ NL ++I
Sbjct: 457 LGPKIIAQLQ----------AKKLVTDVADLYR---LTATDLEKLDKFKEKSINNLLNAI 503

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N  R  S+ER IF LGIRHVG + AR LA+++ S       ++ ++A + D    +  +P
Sbjct: 504 NNSRQNSVERLIFGLGIRHVGGKAARILAEHFGS-------LDELMAADQD---QVAAIP 553

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            +G  IA+A+V +++       VE L      L+   P+         S +  K +V TG
Sbjct: 554 NIGPTIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPT---RPAVSDSFVSGKTVVITG 610

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
              +  R +  + + QLGA V+  +S+KTD++I GD  GSKL KAQ L V IM+E   L 
Sbjct: 611 KFAEFSRPELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLT 670

Query: 717 LLQ 719
            L+
Sbjct: 671 NLK 673


>gi|322368190|ref|ZP_08042759.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253]
 gi|320552206|gb|EFW93851.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253]
          Length = 685

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 250/717 (34%), Positives = 383/717 (53%), Gaps = 61/717 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+  +    A ++   L + I +HD  YY  + P I D  YDAL  R   +  AF     
Sbjct: 21  PVAEMDEAGASEQAELLREAIRHHDYRYYVENDPRIGDRTYDALFTRLQELEEAF----D 76

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            + P+ P  ++GGE    L  V H  P LS++     ED+R F  RI+R     +   + 
Sbjct: 77  VQTPDSPTRRVGGEPLDELESVEHVAPMLSIDSSGEAEDVRGFDDRIHR-----EVGDVE 131

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  +PK DG  + + YE G+FV AA RGDG +GEDV+  +R I +IP  L  + P+ + V
Sbjct: 132 YVCDPKFDGLSLEVVYEDGEFVRAATRGDGETGEDVTENVRTIASIPHHLRGDYPDYLAV 191

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+  + F   N E +  G  P+ANPRNAA+G LR+L+P+    R L+ F + +   
Sbjct: 192 RGEVYLPLDAFTEFNRERVEQGEDPFANPRNAAAGSLRQLDPSVTAERPLDCFFYDVLAA 251

Query: 247 SEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           SE F     +YE L +    G  VN+   + +     + Y +E+ + R+ L Y+IDG V 
Sbjct: 252 SEEFPTHWSEYEALPE---FGLKVNDRTERVDDIEDCIEYRDELMADRADLNYEIDGTVI 308

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++     +LG  ARS RW  ++KF  +   T ++D+ +Q+GRTG LTPVA LEPV++G
Sbjct: 309 KVNDREKCAELGTTARSYRWAYAYKFPARSERTSIMDVTVQVGRTGRLTPVALLEPVDVG 368

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+LHN D I             +DI VGD V VKRAG+VIP V +++  E+H +
Sbjct: 369 GVTVSRASLHNPDEI-----------AEKDINVGDEVQVKRAGDVIPYVSEVV--EKHSE 415

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              +  P  CP+C S V RD     G +     CTGGLAC+AQ  + + ++ S D  +I+
Sbjct: 416 GH-YELPDRCPVCGSPVERD-----GPIA---YCTGGLACTAQLRQAVAYYGSDDGLDID 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG+++++    +            + +L    +    ++  + G+G+ S  NL   I K
Sbjct: 467 GLGEERVNQLIDA----------GLLESLPDLYELDEKELLELEGWGEKSAENLLAEIEK 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  SL  F+ ++GI  VG E AR LA+ + S       +++++  ++D+   L  VP +
Sbjct: 517 SKRPSLADFLSAIGIPRVGTETARELARTFES-------MDDVMNADSDE---LEAVPDI 566

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G  +A  I EF+ + RN   VE LLK V P   R E     E+ +   VFTG+L +  R 
Sbjct: 567 GPKVAAGIREFFDSERNRSVVEQLLKHVEPE--REEVAGGDELADLTFVFTGSLSE-PRS 623

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
              E V   GA  +  +S  TD ++VG+NPG SK   A +  V I++E++F  LL++
Sbjct: 624 DISELVENHGANATGSVSGNTDYLVVGENPGESKPNDADENDVPILSEDEFWNLLEE 680


>gi|313497885|gb|ADR59251.1| LigA [Pseudomonas putida BIRD-1]
          Length = 776

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/621 (35%), Positives = 344/621 (55%), Gaps = 44/621 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAAMAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP ++     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE      
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSESIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  ++ A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQDARPVEVPSEC 406

Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+      V R    +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++      D    I  PAD++ LQ  Q      +  + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLV---DEGL-IGSPADLYKLQFEQ------VVGLEGFAEVSTQKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALL 629
           A  I  F+++  N   ++ LL
Sbjct: 567 AYEIHNFFEDEHNQKVIQQLL 587



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 13/121 (10%)

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRH---EKNVSS--EIENKKLVFTGTLQK 660
           A A+ EF+++  N    + L +++   +   G H   EK V+    +  +  V TGTL++
Sbjct: 656 ADAVREFFKDEAN----QKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLER 711

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL-FLLQ 719
           + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+ F+ FL +
Sbjct: 712 MSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAE 771

Query: 720 Q 720
           Q
Sbjct: 772 Q 772


>gi|116617684|ref|YP_818055.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272115|sp|Q03YP0|DNLJ_LEUMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116096531|gb|ABJ61682.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 680

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 252/718 (35%), Positives = 390/718 (54%), Gaps = 63/718 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE L+ + A++E + L++++  +   YY+   P++ D  YDAL  R  A+   FP    
Sbjct: 7   PIEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKFPQYVI 66

Query: 68  SEDPNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +G  +    L KV H  P LSL  ++++++L  +  R      K   N  
Sbjct: 67  ---PDSPTQNVGSADTKSELQKVVHPAPMLSLGDVFSLDELNDWDART----TKSLGNQA 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            + LE KIDG  + + Y  G+ V A+ RG+G  GEDV+A ++ I  IP+   L  P  IE
Sbjct: 120 PYNLELKIDGLAVALTYVDGQLVQASTRGNGIVGEDVTANVKTIKAIPK--KLTEPLTIE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGLG 244
           VRGE+Y+ K  F ALN +  A G +P+ANPRNAA+G LR+LN   IT+  N   FV+   
Sbjct: 178 VRGEIYMPKASFAALNKQREADGLEPFANPRNAAAGSLRQLN-VKITKSRNLAAFVYYTA 236

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +   +    Q   L++   LG P +   R  N    I  Y +E  S R +L Y IDG+V 
Sbjct: 237 EPEMLGVTTQSGALERFAELGLPTDTHNRVINKMADIADYIDEYTSERESLSYGIDGVVV 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++  LQ  LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV + 
Sbjct: 297 KVNQLDLQFDLGNTVKIPRWAIAYKFPPEEALTIVCDIEWTVGRTGAVTPTAVMDPVLLA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  A+LHN DY++            +DI++GD V + +AG++IP++  +I+ +R  D
Sbjct: 357 GTTVQRASLHNPDYLR-----------EKDIQIGDTVTLHKAGDIIPEIGQVILEKRPTD 405

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           ++ +  P+ CP C+S +V       G++  A RC     CSAQ  E L HF SR+A NI+
Sbjct: 406 SETYQVPTICPACESNLVH----IEGEV--ALRCINPF-CSAQIQEGLTHFASRNAMNID 458

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + +    K    A  I+  A I+ +   Q  +  K      F + S   L D+IN 
Sbjct: 459 GMGPRVVGQLLK----AGYIKDVASIYRITVEQLLTLDK------FQEKSAVKLIDAINS 508

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  SLER +F LGIR VGA+ AR +A+ + +    ++     IA+ N           +
Sbjct: 509 SKENSLERLLFGLGIRMVGAKAARLIAEKFRTLSAVSEASVEDIANING----------I 558

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--EN-----KKLVFTGT 657
           G  IAQ+IV+++  P +    + LL E++ S G ++  +S  +  EN     KK+V TG 
Sbjct: 559 GHTIAQSIVQYFSTPES----KQLLVELASS-GVNQSYLSDTVIDENSFFYGKKVVLTGK 613

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           L++  R  A +++   GA V+  +S KTD++I G+  GSKL+KA QLGV +  E+QF+
Sbjct: 614 LEQSSRPAATKWLQDHGANVAGSVSVKTDLVIAGEAAGSKLDKASQLGVTVWTEQQFV 671


>gi|167034833|ref|YP_001670064.1| NAD-dependent DNA ligase LigA [Pseudomonas putida GB-1]
 gi|190359275|sp|B0KPX3|DNLJ_PSEPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166861321|gb|ABY99728.1| DNA ligase, NAD-dependent [Pseudomonas putida GB-1]
          Length = 776

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/621 (35%), Positives = 344/621 (55%), Gaps = 44/621 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE   +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ +PK+DG
Sbjct: 60  RVGGEALSAFSQVRHEVPMLSLGNAFEETDLREFGRRVVEGLDQP--GAVDYSCKPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP ++     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE      
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  +R A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGVLEQLKAWGMPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNNLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPDDARPVEVPSAC 406

Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+      V R    +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++      D    I  PAD++ L   Q      I  + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLV---DEGL-IGSPADLYKLAFEQ------IVGLEGFAEVSSKKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALL 629
           A  I  F+++  N   +E LL
Sbjct: 567 AYEIHNFFEDEHNQKVIEQLL 587



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 13/121 (10%)

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRH---EKNVSS--EIENKKLVFTGTLQK 660
           A A+ EF+++  N    + L +++   +   G H   EK V+    +  +  V TGTL++
Sbjct: 656 ADAVREFFKDEAN----QKLARDIEAQLLAFGMHWSCEKKVAEGLPLAGQTWVLTGTLER 711

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL-FLLQ 719
           + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+ F+ FL +
Sbjct: 712 MSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFVTFLAE 771

Query: 720 Q 720
           Q
Sbjct: 772 Q 772


>gi|217077826|ref|YP_002335544.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B]
 gi|254781437|sp|B7IDX6|DNLJ_THEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217037681|gb|ACJ76203.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B]
          Length = 665

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 240/693 (34%), Positives = 378/693 (54%), Gaps = 48/693 (6%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +EI YH+  YY  + P+I D EYD L ++   +   +P+      P  P  K+GG++ 
Sbjct: 13  LREEIEYHNYRYYVLADPVISDEEYDKLLKKLIELEKKYPEFY---SPTSPTQKVGGKVL 69

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               KV HSIP LSL+  +N E++++F  RI +       N + +  E KIDG  + +RY
Sbjct: 70  DGFKKVMHSIPMLSLDNTYNEEEIKEFDERIKKLL---GVNEVEYVCELKIDGISVALRY 126

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E G+FV A  RGDG  GED+S  ++ I +IP  L  N+   IEVRGE+++   +F   N 
Sbjct: 127 ENGQFVTALSRGDGIEGEDISENVKKIKSIPLRLFKNL--TIEVRGEIFMPVKEFEKYNK 184

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA-KGQYEMLQKM 261
                G +P+ANPRNA +G +R+L+ + +  R L+ F++ +    EI+  K Q+E L+ +
Sbjct: 185 IAEEEGLQPFANPRNATAGTIRQLDSSIVAKRNLDSFIYYV-VNPEIYGLKTQWEALKFL 243

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           + +GF  N   R  +  + ++ ++ EM   R+ L Y IDGLV KV+ F  Q++LGE A++
Sbjct: 244 KEIGFKTNPYSRLCHDVNCVIDFWKEMTKKRTQLDYWIDGLVIKVNNFEYQRKLGETAKA 303

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I+ KF   +A +++L+I++ +GRTG++TPVA LEP+N+ G+++  A+LHN DYIK 
Sbjct: 304 PRWAIAFKFPSIKAESKILNIELNVGRTGVITPVAVLEPINLEGSIVKRASLHNFDYIK- 362

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD V V++AG +IP++V +I  +R         P  CPIC  +V
Sbjct: 363 ----------EKDIRIGDHVYVEKAGGIIPQIVSVIKEKRTGKELEIEIPKSCPICGGKV 412

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
                 K  +   A RC     C  +    ++ FVS+ AFNI GLG++ ++        A
Sbjct: 413 -----GKISEEEVAIRCLNP-HCPQKLKRHMEIFVSKSAFNISGLGEKIVEKIVD----A 462

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I   ADIF L      +   +  I G G  S+ N+ + I K +N  L R I  LGI  
Sbjct: 463 RLINDVADIFYL------TPFDLAQISGLGQKSIANILEQIEKAKNTPLYRVIIGLGIPL 516

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG + A+ LA  + S +  +Q            +  L  +  +G  +A+ I+E+++N + 
Sbjct: 517 VGEKTAKILADKFKSIKALSQA----------SYDELTSIEGIGPEVAKNIIEYFKNEKT 566

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              +  L           +   SS++     V TG      R + +E + +LG  V+  +
Sbjct: 567 KEIIRKLENAGVKLEQEEDTKKSSKLAGLTFVITGKFNSFTREEVKEIIEKLGGKVTNTV 626

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           S KTD ++VG+ PGSK +KA +LGVKI+NE++F
Sbjct: 627 SSKTDYLLVGEKPGSKYQKALELGVKIINEDEF 659


>gi|227432449|ref|ZP_03914436.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351770|gb|EEJ42009.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 680

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 252/718 (35%), Positives = 390/718 (54%), Gaps = 63/718 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE L+ + A++E + L++++  +   YY+   P++ D  YDAL  R  A+   FP    
Sbjct: 7   PIEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKFPQYVI 66

Query: 68  SEDPNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +G  +    L KV H  P LSL  ++++++L  +  R      K   N  
Sbjct: 67  ---PDSPTQNVGSADTKSELQKVVHPAPMLSLGDVFSLDELNDWDART----TKSLGNQA 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            + LE KIDG  + + Y  G+ V A+ RG+G  GEDV+A ++ I  IP+   L  P  IE
Sbjct: 120 PYNLELKIDGLAVALTYVNGQLVQASTRGNGIVGEDVTANVKTIKAIPK--KLTEPLTIE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGLG 244
           VRGE+Y+ K  F ALN +  A G +P+ANPRNAA+G LR+LN   IT+  N   FV+   
Sbjct: 178 VRGEIYMPKASFAALNKQREADGLEPFANPRNAAAGSLRQLN-VKITKSRNLAAFVYYTA 236

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +   +    Q   L++   LG P +   R  N    I  Y +E  S R +L Y IDG+V 
Sbjct: 237 EPEMLGVTTQSGALERFAELGLPTDTHNRVINKMTDIAGYIDEYTSERESLSYGIDGVVV 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++  LQ  LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV + 
Sbjct: 297 KVNQLDLQFDLGNTVKIPRWAIAYKFPPEEALTTVRDIEWTVGRTGAVTPTAVMDPVLLA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  A+LHN DY++            +DI++GD V + +AG++IP++  +I+ +R  D
Sbjct: 357 GTTVQRASLHNPDYLR-----------EKDIQIGDTVTLHKAGDIIPEIGQVILEKRPTD 405

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           ++ +  P+ CP C+S +V       G++  A RC     CSAQ  E L HF SR+A NI+
Sbjct: 406 SETYQVPTICPACESNLVH----IEGEV--ALRCINPF-CSAQIQEGLTHFASRNAMNID 458

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + +    K    A  I+  A I+ +   Q  +  K      F + S   L D+IN 
Sbjct: 459 GMGPRVVGQLLK----AGYIKDVASIYRITVEQLLTLDK------FQEKSAVKLIDAINS 508

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  SLER +F LGIR VGA+ AR +A+ + +    ++     IA+ N           +
Sbjct: 509 SKENSLERLLFGLGIRMVGAKAARLIAEKFRTLSAVSEASVEDIANING----------I 558

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--EN-----KKLVFTGT 657
           G  IAQ+IV+++  P +    + LL E++ S G ++  +S  +  EN     KK+V TG 
Sbjct: 559 GHTIAQSIVQYFSTPES----KQLLVELASS-GVNQSYLSDTVIDENSFFYGKKVVLTGK 613

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           L++  R  A +++   GA V+  +S KTD++I G+  GSKL+KA QLGV +  E+QF+
Sbjct: 614 LEQSSRPAATKWLQDHGANVAGSVSVKTDLVIAGEAAGSKLDKASQLGVTVWTEQQFV 671


>gi|148652285|ref|YP_001279378.1| DNA ligase [Psychrobacter sp. PRwf-1]
 gi|190359276|sp|A5WCN7|DNLJ_PSYWF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148571369|gb|ABQ93428.1| DNA ligase, NAD-dependent [Psychrobacter sp. PRwf-1]
          Length = 686

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 252/709 (35%), Positives = 386/709 (54%), Gaps = 55/709 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +L  ++  H++ YY   +P I D+EYD L+     +   +P+L +   P+ P   +G
Sbjct: 20  KMRTLIAQVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEERYPELTQ---PDSPTASVG 76

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                S  +V H I  LSL  I+N +DL++F+ R+       D N   + +E K+DG  +
Sbjct: 77  DNPLPSFSQVQHDIAMLSLGNIFNYQDLQEFMRRVNDRLSDADRNP-EYEIEMKLDGLAV 135

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           +++Y  G+FV    RGDG  GED++  ++ I  IP V+ +    +++EVRGEV + K  F
Sbjct: 136 SLKYHNGQFVRGVTRGDGQMGEDITQNVKTINNIPLVIEAAQDIDVLEVRGEVLMPKAGF 195

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN      G K +ANPRNAA+G LR+L+P    +R L F+ + + +        Q   
Sbjct: 196 KRLNRLAQENGDKTFANPRNAAAGSLRQLDPAVAASRPLAFYAYSVNQGLPEAITLQSAA 255

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  ++ LGF V++  R   T   +  YY  M   R+ L ++IDG+V KVD+ +LQ QLG 
Sbjct: 256 LTWLKQLGFTVSDFER-VKTAQQVQDYYESMIQKRADLAFEIDGMVIKVDDLTLQSQLGA 314

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R PRW  ++KF  +   T L  I+ Q+GRTG LTPV +LEPV +GG  ++N TLHN  
Sbjct: 315 LSREPRWATAYKFPAETVMTTLNSIEWQVGRTGQLTPVGKLEPVQVGGVTVSNVTLHNFG 374

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+ L           D+R GD V V RAG+VIPKV  +  + R       + P+ CP+C
Sbjct: 375 EIQRL-----------DVRAGDTVSVHRAGDVIPKVTRVWHDLRPEGTSAVTLPTHCPVC 423

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S VV    P+ G+ +A  RCTG L C AQQ E L HFVSR A +I+GLG++ L  FF+ 
Sbjct: 424 DSPVVL---PE-GEALA--RCTGELFCPAQQQEALIHFVSRKAMDIDGLGERWLISFFEH 477

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L        T    +   G+ SV+N+  +I + +  +L RFI++L
Sbjct: 478 G----IVKTVADIYHLNEHADELVT----LEKLGEKSVSNMLRAIEESKKTTLARFIYAL 529

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG   A++LA+Y+        ++  ++  + D   +L  VP VG I A+ I  F++
Sbjct: 530 GIRGVGETTAQNLAQYF-------GDLPELMGASID---ALEAVPDVGHITAELIYNFFR 579

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTL--QKIQRHKAQEY 669
              NI  + AL +      G +   V  +      +E +  V TGTL    + R  A+ +
Sbjct: 580 AEHNIEVINALQQ-----AGVYWDKVEQQALDNLPLEGQTWVITGTLVASGMSRDDAKAH 634

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA VS  +S KT  ++ G+  GSKL KAQ LGV+++ E++FL ++
Sbjct: 635 LQALGAKVSGSVSAKTSALLAGEKAGSKLTKAQSLGVRVVLEDEFLKMI 683


>gi|170722763|ref|YP_001750451.1| NAD-dependent DNA ligase LigA [Pseudomonas putida W619]
 gi|254781396|sp|B1JC06|DNLJ_PSEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169760766|gb|ACA74082.1| DNA ligase, NAD-dependent [Pseudomonas putida W619]
          Length = 776

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/621 (35%), Positives = 345/621 (55%), Gaps = 44/621 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   + +L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AESRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP ++     P ++EVRGEV++SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVFMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ S    +  
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSASIGESH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  +R A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLASQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPVQVPSAC 406

Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+      V R    +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++      D    I  PAD++ LQ  Q      I  + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLV---DEGL-IGSPADLYKLQFDQ------IVGLEGFAEVSSKKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALL 629
           A  I  F+++  N   +E LL
Sbjct: 567 AYEIHNFFEDEHNCKVIEQLL 587



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 12/125 (9%)

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRH---EKNVSS--EIENKKLVFTGTLQK 660
           A+A+ EF+++  N    + L +++   +   G H   EK V+    +  +  V TGTL++
Sbjct: 656 AEAVREFFKDEAN----QKLARDIEAQLLAFGMHWNSEKKVAEGLPLAGQTWVLTGTLER 711

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R  A+E +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+ F+  L +
Sbjct: 712 MSRDIAKEKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFVVFLDE 771

Query: 721 YNTTL 725
               +
Sbjct: 772 QGIAI 776


>gi|148546832|ref|YP_001266934.1| NAD-dependent DNA ligase LigA [Pseudomonas putida F1]
 gi|190359274|sp|A5W0U0|DNLJ_PSEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148510890|gb|ABQ77750.1| DNA ligase, NAD-dependent [Pseudomonas putida F1]
          Length = 776

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/621 (35%), Positives = 344/621 (55%), Gaps = 44/621 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP ++     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE      
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSESIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  ++ A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQDARPVEVPSEC 406

Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+      V R    +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++      D    I  PAD++ LQ  Q      +  + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLV---DEGL-IGSPADLYKLQFEQ------VVGLEGFAEVSTQKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALL 629
           A  I  F+++  N   ++ LL
Sbjct: 567 AYEIHNFFEDEHNQKVIQQLL 587



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 13/121 (10%)

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRH---EKNVSS--EIENKKLVFTGTLQK 660
           A A+ EF+++  N    + L +++   +   G H   EK V+    +  +  V TGTL++
Sbjct: 656 ADAVREFFKDEAN----QKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLER 711

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL-FLLQ 719
           + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+ F+ FL +
Sbjct: 712 MSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAE 771

Query: 720 Q 720
           Q
Sbjct: 772 Q 772


>gi|212703192|ref|ZP_03311320.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098]
 gi|212673458|gb|EEB33941.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098]
          Length = 729

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 257/730 (35%), Positives = 397/730 (54%), Gaps = 68/730 (9%)

Query: 8   PIEALSI-----EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           P + LS+     ++ ++ ++ L   + +H+  Y+   KP+I D +YDAL R   A+   +
Sbjct: 43  PADPLSLPEPPRDRPQERMAWLTTILEHHNYLYHTLDKPVISDDQYDALFRELKALEEDY 102

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P       P+ P  ++GG +   L K  H      L+ +++ E+ ++F+ R+ R      
Sbjct: 103 PQW---RSPHSPTLRVGGGLLGGLPKQRHRQRMYGLDNVFSAEEWQEFVARMQR---ALP 156

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLN 180
           +  + F  +PK+DG  + I YE G    A  RGDG  GE V+  +R I T+P  L  +  
Sbjct: 157 EAPLAFWCDPKLDGLALEIIYEDGVLQQALTRGDGEEGEVVTEAVRTIRTVPLRLRGTGP 216

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFF 239
            PE +EVRGEV I K DF A+N+   ++G+K  ANPRNAA+G LR+L+  +  +  L F 
Sbjct: 217 FPERLEVRGEVVIYKKDFAAINERRESLGQKLLANPRNAAAGALRQLDVANTQQMPLRFL 276

Query: 240 VHGLGKTSEIFAKG---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
            + LG+     A+    Q+E+  ++R  GF      +       + +Y   ++  R+  P
Sbjct: 277 AYSLGEARWGQAEPCHFQHELAARLRDYGFLTPPDGKLCADPAAVEAYVESVRQGRADFP 336

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
            +IDG V K D+   Q+ LG  AR+PR+ I+ KF   Q  TRL  I+IQ+GRTG+LTPVA
Sbjct: 337 MEIDGAVAKQDDLEAQEALGFTARAPRFAIAFKFPAMQVHTRLTGIEIQVGRTGVLTPVA 396

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           +LEPV +GG ++T ATLHNED I             +D+RVGD V+V+RAG+VIP+VV  
Sbjct: 397 QLEPVAVGGVMVTRATLHNEDEIL-----------AKDVRVGDTVIVQRAGDVIPEVVGP 445

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           ++ ER   A+PF FP  CP+C     R+     G+  AA RC G ++C A +L  + HFV
Sbjct: 446 VLEERPSGARPFEFPHICPVCGEPAHRE----PGE--AAWRC-GNISCPAVRLRSICHFV 498

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDV 533
           S+   +++G+G++ ++    S      +  P  +F L          ++++L F   GDV
Sbjct: 499 SKAGLDVQGVGQKWIEQLVSSG----HVTSPKQLFRL---------TVQDLLPFDRMGDV 545

Query: 534 SVTNLYDSI-NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
               + D+  + R N +L R I +LGIRHVG + AR LA ++      A           
Sbjct: 546 LARKIVDAFDDARHNATLARLISALGIRHVGEQTARMLAAHFYDMDALAAA--------- 596

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIE 648
            D   L+ +P VG  +A +I  F+++P N   +    EA L  V+ +    E      ++
Sbjct: 597 -DTQRLLELPDVGPEVASSIRSFFESPANQHMLAGLREAGLWPVA-AAEPAEAAGEGPLQ 654

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K ++FTGTL  + R KA++     GAVV   +S+K DI++VG+NPGSKLEKAQ LG+ +
Sbjct: 655 GKNILFTGTL-SMARGKAKQLAEAAGAVVLGSVSKKLDILVVGENPGSKLEKAQSLGITV 713

Query: 709 MNEEQFLFLL 718
           ++E  FL LL
Sbjct: 714 LDEAAFLDLL 723


>gi|254994698|ref|ZP_05276888.1| DNA ligase [Anaplasma marginale str. Mississippi]
          Length = 624

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/573 (39%), Positives = 332/573 (57%), Gaps = 38/573 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQAR+ L+ L  ++ +HD  Y+    P + D +YD L +    +   FPD+++ +D   
Sbjct: 2   LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDISQYDDY-- 59

Query: 74  PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             + +G     S F KV H  P LSLE  + ++D+ KFITR+ RF + + D+ +  + E 
Sbjct: 60  -ADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG   +  Y  GK    A RG+GH GED++     +  +P  L  + PE++EVRGE+Y
Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQLD-SAPEVLEVRGEIY 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +   DF  L       G   +ANPRNAA+G +R+LN   +  R L++  +     +  FA
Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLNQKIVEERNLSYVAYS--AVNSTFA 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E+L+++   GF  N  V   +     +++YN + + RS L YDIDG+VYKV+  + 
Sbjct: 230 T-QQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSTNF 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK LG   +SPRW I+HKF   +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A
Sbjct: 289 QKLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN + I+            +D+R+GD V+VKRAGEVIP+VVD+    R    Q F FP
Sbjct: 349 SLHNLNEIE-----------RKDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C S++ R+          A RC   L+C AQ LER+KHFVSRD  NI GLG +Q+
Sbjct: 398 SHCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQI 451

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +FF         I   ADIF+L+ +        E+  G+G+ SV NL  +I     + L 
Sbjct: 452 EFFCNHG----LIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLS 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
            FIF+LGIR +G   A+ +A++Y SY+N+ Q +
Sbjct: 506 NFIFALGIRFIGVGAAKLIAEHYRSYKNWHQAM 538


>gi|319892947|ref|YP_004149822.1| DNA ligase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162643|gb|ADV06186.1| DNA ligase [Staphylococcus pseudintermedius HKU10-03]
          Length = 667

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 243/708 (34%), Positives = 382/708 (53%), Gaps = 62/708 (8%)

Query: 21  LSSLEQEISYHDDCYYQYS-------KPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +SS+ Q +       +QY+        P + DSEYD L      I    P+L  S+ P  
Sbjct: 1   MSSIAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIETKHPELKTSDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GGE   S  KV H  P LSL   +N  DLRKF  R+     +     + +  E K
Sbjct: 60  --VRVGGEAQSSFEKVNHDTPMLSLSNAFNEADLRKFDQRV-----RDAVGEVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  GK V    RGDG +GED++  ++ I  IP  L   I    EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGKLVQGLTRGDGTTGEDITENLKTIYAIPLTLDKKIS--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+   A   +P+ANPRNAA+G LR+L+      R L+ F++ +   +E+ A 
Sbjct: 171 PRQSFLKLNEAKAARDEQPFANPRNAAAGSLRQLDSKLAAARKLDIFLYSINDFTELDAS 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N+   +  T   ++ Y  +  + R  LPYDIDG+V KV+    Q
Sbjct: 231 SQSEALDELDELGFKTNHEREKVKTIDEVLEYIKKWTNQREQLPYDIDGIVIKVNHLEHQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGFTQKSPRWAIAYKFPAEEVITELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +DIR+GD V++K+AG++IP+VV +I++ R   A+ +  P+
Sbjct: 351 LHNEDLIH-----------EKDIRIGDSVVIKKAGDIIPEVVRVILDRRPEGAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + ++
Sbjct: 400 HCPSCDHELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIE 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +        I+  ADIF L +       ++      G+     L D+I   +  SLE 
Sbjct: 453 QLYTHA----LIKDVADIFYLTKEDLLPLERM------GEKKAQKLIDAIETSKARSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y       + ++ ++    D+   L+ +  VG+ +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKY-------ETMDRLLTVTEDE---LVEIYDVGEKLAQSL 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQKIQRHKAQ 667
           V + +N  +I A+   L+    ++    + +S      E   K +V TG LQ++ R++A 
Sbjct: 553 VTYLEN-EDIRALIEKLQSKGVNMTFKGQKLSQIEGHPEFAGKTIVLTGKLQQMTRNEAT 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            ++   GA V++ +++ TD++I G++ GSKL KAQ LG  I  E+ F+
Sbjct: 612 NWLKLQGAKVTSSVTKSTDLVIAGEDAGSKLTKAQSLGTMIWTEQDFI 659


>gi|323464000|gb|ADX76153.1| DNA ligase, NAD-dependent [Staphylococcus pseudintermedius ED99]
          Length = 667

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 243/708 (34%), Positives = 382/708 (53%), Gaps = 62/708 (8%)

Query: 21  LSSLEQEISYHDDCYYQYS-------KPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +SS+ Q +       +QY+        P + DSEYD L      I    P+L  S+ P  
Sbjct: 1   MSSIAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIETKHPELKTSDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GGE   S  KV H  P LSL   +N  DLRKF  R+     +     + +  E K
Sbjct: 60  --VRVGGEAQSSFEKVNHDTPMLSLSNAFNEADLRKFDQRV-----RDAVGEVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  GK V    RGDG +GED++  ++ I  IP  L   I    EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGKLVQGLTRGDGTTGEDITENLKTIYAIPLTLDKKIS--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+   A   +P+ANPRNAA+G LR+L+      R L+ F++ +   +E+ A 
Sbjct: 171 PRQSFLKLNEAKAARDEQPFANPRNAAAGSLRQLDSKLAAARKLDIFLYSINDFTELDAS 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N+   +  T   ++ Y  +  + R  LPYDIDG+V KV+    Q
Sbjct: 231 SQSEALDELDELGFKTNHEREKVKTIDEVLEYIKKWTNQREQLPYDIDGIVIKVNHLEHQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGFTQKSPRWAIAYKFPAEEVITELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +DIR+GD V++K+AG++IP+VV +I++ R   A+ +  P+
Sbjct: 351 LHNEDLIH-----------DKDIRIGDSVVIKKAGDIIPEVVRVILDRRPEGAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR      G++  A RC     C AQ +E L HFVSR A NI+GLG + ++
Sbjct: 400 HCPSCDHELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIE 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +        I+  ADIF L +       ++      G+     L D+I   +  SLE 
Sbjct: 453 QLYTHA----LIKDVADIFYLTKEDLLPLERM------GEKKAQKLIDAIETSKARSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y       + ++ ++    D+   L+ +  VG+ +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKY-------ETMDRLLTVTEDE---LVEIYDVGEKLAQSL 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQKIQRHKAQ 667
           V + +N  +I A+   L+    ++    + +S      E   K +V TG LQ++ R++A 
Sbjct: 553 VTYLEN-EDIRALIEKLQSKGVNMTFKGQKLSQIEGHPEFAGKTIVLTGKLQQMTRNEAT 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            ++   GA V++ +++ TD++I G++ GSKL KAQ LG  I  E+ F+
Sbjct: 612 NWLKLQGAKVTSSVTKSTDLVIAGEDAGSKLTKAQSLGTMIWTEQDFI 659


>gi|124267002|ref|YP_001021006.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1]
 gi|166215820|sp|A2SGT2|DNLJ_METPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|124259777|gb|ABM94771.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1]
          Length = 677

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/709 (34%), Positives = 371/709 (52%), Gaps = 57/709 (8%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L +++ YH   YY    P I D+EYD L     A+  A P L     P+ P  ++ G 
Sbjct: 13  AQLREQLEYHAHRYYVLDAPEIPDAEYDRLFTELQALEAAHPGL---RTPDSPTQRVIGA 69

Query: 82  MNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQ-KKDDNSIFFTLEPKIDGTM 138
           +   L  V H++P LS+  E         KF   +    +   D   + +  E K DG  
Sbjct: 70  VLEGLSAVRHAVPMLSIKTETDTTPTGALKFDAAVRNALKLPPDAPPLRYAAELKFDGLA 129

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I +RY+ G+ V AA RGDG +GEDV+  +  I ++P+ L      ++EVRGEV++ ++DF
Sbjct: 130 INLRYQAGRLVQAATRGDGETGEDVTHTVGTIESVPKQLRGITAPVLEVRGEVFMRRDDF 189

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI-FAKGQYE 256
            ALN+     G K + NPRNAA+GI+R+L+ +    R L+FF +GLG             
Sbjct: 190 EALNERQREAGLKTFVNPRNAAAGIVRQLDASIARQRPLSFFAYGLGDVQGWDVPPTHAG 249

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L  +  LG PV+           + +++  + + R  LP+DIDG+VYKVDE +LQ+QLG
Sbjct: 250 LLDALAALGLPVDAHRTVVEGGEALAAFHAGIAAERDALPFDIDGVVYKVDERALQQQLG 309

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
            ++R PRW ++HK+  ++ ST+L  I+IQ+GRTG LTPVA+L+PV +GG  ++NATLHN 
Sbjct: 310 FKSREPRWAVAHKYPAQEQSTQLAGIEIQVGRTGKLTPVAKLQPVFVGGTTVSNATLHNR 369

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             ++         R G  IR+GD V+V+RAG+VIP+VV  +   R      F  P  CP+
Sbjct: 370 FELR---------RKG--IRIGDTVIVRRAGDVIPEVVGRVPVPRTAYIPNFRMPRACPV 418

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S+ +R+      +    +RC+GGL C+AQ+ + L HF  R   +IEGLG + ++    
Sbjct: 419 CGSQALRE------RGSVDYRCSGGLFCAAQRKQALLHFAGRRMMDIEGLGDKLVEQLVD 472

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                        I TL    +    K+  +   GD S  NL  ++   +  +L RF+FS
Sbjct: 473 G----------GIIRTLPELYRLGVAKLVALERMGDKSAANLVAALEASKATTLARFLFS 522

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G   A+ LA+++ +           +   ND          VG ++AQ++  F+
Sbjct: 523 LGIRHIGEATAKDLARHFGALDRVMDASVEQLLEVND----------VGPVVAQSLRTFF 572

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSE-------IENKKLVFTGTLQKIQRHKAQEY 669
             P N   VE L      + G H    S E       +  K  V TGTL  + R  A+E 
Sbjct: 573 DQPHNREVVEQLR-----AAGVHWDEHSGEADLTPRPLAGKTFVLTGTLPSLGREAAKEL 627

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +   G  V+  +S+KTD ++ G+  GSKLEKAQ LGV +++E     LL
Sbjct: 628 IEAAGGKVAGSVSKKTDYVVAGEEAGSKLEKAQALGVAVIDEAALRALL 676


>gi|258508011|ref|YP_003170762.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG]
 gi|257147938|emb|CAR86911.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG]
 gi|259649339|dbj|BAI41501.1| DNA ligase [Lactobacillus rhamnosus GG]
          Length = 674

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 253/723 (34%), Positives = 391/723 (54%), Gaps = 65/723 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A  E++ L ++++     YY    P + D+ YD   R   A+  AFP L  
Sbjct: 5   PAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLVT 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    +++ 
Sbjct: 65  ---PDSPTQQVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QANVGHAVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE G+ V  + RGDG+ GEDV+  +  I ++P+  +L  P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNVGEDVTKNVLTIASVPK--TLKRPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245
           RGE Y+ K  F  LN    A G  P+ANPRNAA+G LR+LNP  IT  R L+ F++ L  
Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPK-ITAGRELDTFIYTLID 234

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K Q+E +  M+ LGF  N     A+    I +Y  +  S R  LPY IDG+V K
Sbjct: 235 ADRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G
Sbjct: 295 VNDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  + 
Sbjct: 355 TTVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVKKRPANT 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P   P  CP C  ++V  L+ +      A RC   + C AQ  E+L HF SR+A NI+G
Sbjct: 404 PPAPIPEKCPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDG 456

Query: 486 LGKQ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           LG +   QL           + ++  D+  L R    + T +E +  F + S+ NL ++I
Sbjct: 457 LGPKIIAQLQ----------AKKLVTDVADLYR---LTATDLEKLDKFKEKSINNLLNAI 503

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N  R  S+ER IF LGIRHVG + AR LA+++ S       ++ ++A + D    +  +P
Sbjct: 504 NNSRQNSVERLIFGLGIRHVGGKAARILAEHFGS-------LDELMAADQD---QVAAIP 553

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            +G  IA+A+V +++       VE L      L+   P+         S +  K +V TG
Sbjct: 554 NIGPTIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPT---RPAVSDSFVSGKTVVITG 610

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
              +  R +  + + QLGA V+  +S+KTD++I GD  GSKL KAQ L V IM+E   L 
Sbjct: 611 KFAEFSRPELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLT 670

Query: 717 LLQ 719
            L+
Sbjct: 671 NLK 673


>gi|167039197|ref|YP_001662182.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X514]
 gi|256752857|ref|ZP_05493696.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913208|ref|ZP_07130525.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561]
 gi|307723778|ref|YP_003903529.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X513]
 gi|254781440|sp|B0K3S1|DNLJ_THEPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166853437|gb|ABY91846.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X514]
 gi|256748259|gb|EEU61324.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889893|gb|EFK85038.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561]
 gi|307580839|gb|ADN54238.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X513]
          Length = 662

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 248/707 (35%), Positives = 399/707 (56%), Gaps = 51/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+L   + P+ P  +
Sbjct: 4   KERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEL---KTPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +LR F  R+     ++    + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRV-----REAVGDVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YEKG F   + RGDG  GE+V+  ++ I +IP  L  ++  +  VRGEV++ +  
Sbjct: 116 SVELIYEKGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVSLV--VRGEVFMPRAS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L K      K   E
Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +   GF +    ++ +    ++    E++++R  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLEFLNEQGFKIIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V+V++AGE+IP+VV+++  ER    + F  P  CP 
Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR L        A  RCT GL C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVRLLGE------AIRRCT-GLNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLL- 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           S+    +I   AD++ L+        ++      GD SV NL ++I + +   L+R +F 
Sbjct: 455 SKGLIHNI---ADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++       + ++NI+    +D+  L   P +G  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHF-------KTMDNIMKAKFEDFTQL---PDIGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
              +N+  +E  LK    ++ +  K  VS+  E K  V TG L+   R +A   + + G 
Sbjct: 556 AEKQNVEIIEK-LKNAGVNMKKLSKGKVSNIFEGKTFVLTGALESYTREEATRMIEERGG 614

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            V+  +S+KTD ++VG +PGSKL+KAQ+LG+KI++E+QF  +L+  N
Sbjct: 615 KVTNSVSKKTDYVLVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGEN 661


>gi|309389839|gb|ADO77719.1| DNA ligase, NAD-dependent [Halanaerobium praevalens DSM 2228]
          Length = 670

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 245/718 (34%), Positives = 402/718 (55%), Gaps = 56/718 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+ E+A K++++L+++I  H+  Y+    P I D+E+D L +    +   FPDL  +ED 
Sbjct: 4   LNKEKASKKITALKEKIRKHEYKYFVLDDPSISDAEFDQLMQELIKLESEFPDLI-TED- 61

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++GG +     KV HS   LSL+  +N EDL +F  R+ +  + +D     + +E
Sbjct: 62  -SPTQRVGGAVLDEFKKVKHSTKMLSLDNAFNKEDLIEFDQRVQKNLKGEDYQ---YVVE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG    +RY  G F   A RG+G  GED+S  ++ I ++P  L +     +++RGE+
Sbjct: 118 HKIDGLSAVMRYNNGTFELGATRGNGEVGEDISNNMKTIRSLP--LKIEEKAEMQLRGEI 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y++K++F  LN + +     P+ANPRNAA+G +R+L+      R L+  ++ L   S+  
Sbjct: 176 YLAKSEFKRLNKQRLENDESPFANPRNAAAGSVRQLDSKIAAERSLSILIYDLISHSKRE 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E+   ++  GF +N   + A+    ++    +    R  L ++IDGLV K+++ +
Sbjct: 236 FKTHLEVFAYLKKQGFKIN-WYQAASNIESVIEICQDWHQKREKLDFEIDGLVIKINDLA 294

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L+K+LG  ARSPRW I++KF  +Q +T++ DI+I +GRTG LTP A L+PV + G+ ++ 
Sbjct: 295 LRKKLGNTARSPRWAIAYKFPAQQKTTKIKDIEISLGRTGALTPTAILDPVELAGSTVSR 354

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED IK            +DI++GD VLV++AG+VIP+VV +I  +R    + F  
Sbjct: 355 ATLHNEDEIK-----------RKDIKIGDIVLVQKAGDVIPEVVKVITEKRDGSEKEFEM 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C   V+R   P+     A  RCT  ++C AQ+ E + HFVSR+A NI+G+G   
Sbjct: 404 PKNCPVCGGEVIR---PEGE---AVSRCT-NISCPAQRKESILHFVSRNAMNIDGVGPAL 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++    +      I   AD++ L++      + ++++   G+ S  N+  +I   +    
Sbjct: 457 IEQLLANN----LIEDYADLYFLKQ------SHLKDLERMGEKSSENVIKAIEASKKREF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +++LGIRHVG   AR LA+ + S       I+ + +   DD   L  +  +G +IA 
Sbjct: 507 FRVLYALGIRHVGIGAARILAENFNS-------IDELKSAKIDD---LKNISEIGPVIAD 556

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQKIQRHKA 666
           +IV F+Q   NI     LL  +  +  R +   S E EN     K VFTG+L    R + 
Sbjct: 557 SIVNFFQERHNI----DLLSRLKQAGIRLKNKASQENENFLDQLKFVFTGSLNDFTRSEI 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           ++ V   G    + +S KTD +++GDNPGSK +KAQ LG++I+NE +F  ++++  ++
Sbjct: 613 KDLVENAGGRAVSSVSSKTDYLVIGDNPGSKYDKAQSLGIEILNESEFKEMIKKKRSS 670


>gi|86608809|ref|YP_477571.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123724461|sp|Q2JLU3|DNLJ_SYNJB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86557351|gb|ABD02308.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 686

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 239/706 (33%), Positives = 382/706 (54%), Gaps = 59/706 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E+  +EL +L Q+ S     YY +  PI+ DS YD L R    +  A+P+L     P+ 
Sbjct: 5   LEERARELRTLLQKASI---AYYVHDAPILEDSVYDRLYRELQELERAYPELV---TPDS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIF 127
           P  ++G +       V H IP  SLE  +N E+L ++  R+ R   +      + +  + 
Sbjct: 59  PTQRVGEKPAEHFPTVFHRIPLYSLENAFNPEELEEWQERLLRVLGRAPVPDSRTEGELE 118

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186
           +  E KIDG  + + Y +G     A RGDG +GED++  +RAI +IP R+ + + P ++E
Sbjct: 119 YVCELKIDGAALALTYIEGLLERGATRGDGQAGEDITPNVRAIRSIPLRLATADPPPVLE 178

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-- 243
           VRGEVY++  +F  +N E  + G  P+ANPRN A+G LR+L+   +  R L+FF + L  
Sbjct: 179 VRGEVYLALAEFERINQERRSAGDPPFANPRNCAAGTLRQLDSRVVAARKLSFFAYALHW 238

Query: 244 --GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G  +    + Q++ LQ+++ LGFPVN   +       ++ +Y   +   + LPY  DG
Sbjct: 239 PEGWPAGDPPQTQWQCLQQLKELGFPVNPLSQVCRGLGEVIQFYERWRG--AQLPYASDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K++   LQ++ G   + PRW I+ K+  ++  TR+  I   +GRTG +TPVA LEPV
Sbjct: 297 VVVKLNSLRLQEEAGFTQKFPRWAIALKYPAQEVPTRIRAIVASVGRTGAVTPVAELEPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G L++ A+LHN D ++ L           D+ +GD  +V++AGE+IP+VV I+   R
Sbjct: 357 PLAGTLVSRASLHNADRLREL-----------DVHIGDTAIVRKAGEIIPEVVGILKELR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             DA P+S PS CP C + +VR      G+ V   RC     C A+   +L+H+ SRDA 
Sbjct: 406 PADAVPYSLPSQCPECHTPLVR----PPGEAVT--RCPNP-ECPAKLRGQLQHWASRDAL 458

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG+++     +S      +R  AD++ L   Q      ++ + G G  S   L  +
Sbjct: 459 DIEGLGEKRAAQLVES----LGVRTVADLYRLTPEQ------LQGLEGMGSRSSQKLVQA 508

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I + R    ER ++ LGI HVG   A+ LA ++ + +  AQ     IA            
Sbjct: 509 IQRSRQQPWERVLYGLGIPHVGVVTAQILAGHFPTPELLAQASAETIAQIYG-------- 560

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQK 660
             +G  +A+A+V ++  P +   ++ L     P++ + E    S+I   KK V TGTL  
Sbjct: 561 --IGAEVAEAVVAWFAEPAHRRLLQELQALGIPALPQQENPAVSQILAGKKFVITGTLPT 618

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           + R +A+ ++   G  V+A +SR+TD ++VG +PGSKLE+AQQLG+
Sbjct: 619 LSRQQAKAWIESRGGKVTASVSRQTDYVVVGSDPGSKLEQAQQLGI 664


>gi|148544657|ref|YP_001272027.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016]
 gi|184154010|ref|YP_001842351.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112]
 gi|227363780|ref|ZP_03847887.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3]
 gi|325682991|ref|ZP_08162507.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A]
 gi|209572830|sp|A5VLG6|DNLJ_LACRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781354|sp|B2G8T9|DNLJ_LACRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148531691|gb|ABQ83690.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016]
 gi|183225354|dbj|BAG25871.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112]
 gi|227071137|gb|EEI09453.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3]
 gi|324977341|gb|EGC14292.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A]
          Length = 680

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 247/721 (34%), Positives = 396/721 (54%), Gaps = 56/721 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M ++Q  P++ L++++A+ E+  L  +++     YY+   P + D  YD   +R   +  
Sbjct: 1   MSEKQ-TPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L  ++ P     ++GG     L KV H IP LS+  +++IE+L  F  R     Q+
Sbjct: 60  QFPQLVSADSPT---QRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQR----QQE 112

Query: 121 KDDNSIF--FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
             D  +   + LE KIDG  +++ YE GK V  + RG+G  GEDV+A +R I ++P    
Sbjct: 113 NRDVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTANVRTIKSVP--AE 170

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLN 237
           L  P  IEVRGE Y+ K  F  LN +  A G   +ANPRNAA+G LR+L+P     R L+
Sbjct: 171 LPEPLSIEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELD 230

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F++ + +  +I  K Q E L +MR LGF VN   R  +    I  Y  E  + R  L Y
Sbjct: 231 TFMYYVPEYQKIGVKTQAEALDRMRELGFNVNPNNRVVHNRDEIEKYIEEYTAQRDKLTY 290

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            IDG+V KV++   +  LG   + PRW I++KF  ++ +T + DI   +GRTG +TP A 
Sbjct: 291 GIDGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAV 350

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           ++PV + G  ++ A+LHN DY++            +DIR+GD V + +AG++IP++  + 
Sbjct: 351 MDPVQLAGTTVSRASLHNPDYLR-----------EKDIRIGDTVYLHKAGDIIPEISKVD 399

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R  D+  +  P+ CP+C S +V       G++  A RC   + C AQ  E L HF S
Sbjct: 400 LTKRPADSVEYEIPTKCPVCGSELVH----LDGEV--ALRCINPM-CPAQIKEGLAHFAS 452

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R+A NI+GLG + ++  +  E     I   A ++ L   Q  +  K      FG+ S  N
Sbjct: 453 RNAMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLTLDK------FGEKSTAN 502

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  SI+  RN S+ER +F LGIRHVGA+ AR + +++        ++++++  + D+   
Sbjct: 503 LLTSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHF-------GDLDSLMKADADE--- 552

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLV 653
           +  +  +G  I ++IV ++ N + +  ++  L+EV  +      R   N  SE   +++V
Sbjct: 553 ISAISGIGPTIGESIVTYFANQQVVKLIDE-LREVGVNFAYLGSRSNANPDSEWNGRRVV 611

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG L ++ R +A+ ++   GA V+  +S+KTDI+I G + GSKL KAQ LG+ + NE+Q
Sbjct: 612 LTGKLTEMTRGEAKSWLENHGAKVTESVSKKTDIVIAGADAGSKLTKAQNLGIDVWNEQQ 671

Query: 714 F 714
           F
Sbjct: 672 F 672


>gi|171059186|ref|YP_001791535.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6]
 gi|254781357|sp|B1Y6D4|DNLJ_LEPCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|170776631|gb|ACB34770.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6]
          Length = 768

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 262/756 (34%), Positives = 388/756 (51%), Gaps = 91/756 (12%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A    + L   + +H   YY    P + D+EYD L +   AI   +P L  ++ P  
Sbjct: 31  LQTAAARAAWLRSTLQHHAHLYYVLDAPELPDAEYDRLFQELQAIEAMYPALRTADSPT- 89

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQKKDDNS-IFFTL 130
              ++ G++      V H++P LS+    + E      F  R+ R  +  DD   I +  
Sbjct: 90  --QRVLGQVRDGFVVVRHAVPMLSIRTETDTEASGAVAFDARVRRELELPDDAPPISYAT 147

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---------- 180
           E K DG  I +RYE G  V AA RGDG SGEDV+  IR I  IP  L             
Sbjct: 148 ELKFDGLAINLRYEHGVLVQAATRGDGESGEDVTQNIRTIGQIPLRLRWAPTLGADAHSL 207

Query: 181 ---------------------IPEIIEVRGEVYISKNDFLALND---EMIA---VGRKPY 213
                                 P ++EVRGEVY+ ++DF ALN+   E IA    G K +
Sbjct: 208 PPEGARFALGRPGGETGAPDLAPAVLEVRGEVYMRRDDFEALNERQRERIARGDKGEKTF 267

Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQKMRCLGFPVNNG 271
            NPRNAA+G +R+L+P     R L+FF +GLG+            +L  +   G PV   
Sbjct: 268 VNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGEVQGWALPHTHAGLLDALAAAGLPVCAE 327

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
                   G+V+++  + ++R +L +DIDG+VYKVD  +LQ++LG   R PRW ++HK+ 
Sbjct: 328 RAVVQGADGLVAFHQRIGALRDSLAFDIDGVVYKVDSLALQQRLGFVTREPRWAVAHKYP 387

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++  TRLL I+IQ+GRTG LTPVARLEPV +GG  ++NATLHNED  +           
Sbjct: 388 AQEQMTRLLGIEIQVGRTGKLTPVARLEPVFVGGTTVSNATLHNEDEAR----------- 436

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFS----FPSFCPICQSRVVRDLN 446
            +D+RVGD V+V+RAG+VIP+VV +++ +R  D  +PF         CP+C S + R   
Sbjct: 437 RKDVRVGDTVIVRRAGDVIPQVVGVVLEQRPDDVGEPFDLYQRLGGRCPVCGSAIAR--- 493

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
              G+  A  RCTGGL C+AQ+ + + HF SR   +IEGLG + +D        A  IR 
Sbjct: 494 -PEGE--ADWRCTGGLFCAAQRKQAILHFASRRMMDIEGLGDKLVDQLVD----AGVIRT 546

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
             +++ L         K+  +   G+ S  NL  ++ K +  +L RF+FSLGIR VG   
Sbjct: 547 LPELYKL------GVAKLTALERMGEKSAVNLVAALEKSKQTTLARFLFSLGIRQVGEAT 600

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A++LA+++ +       ++ ++  + D    L  VP VG I+A +I  F+  P N   VE
Sbjct: 601 AKALARHFGA-------LDRVMDASVD---QLQAVPDVGPIVALSIRTFFDQPHNREVVE 650

Query: 627 AL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            L    +                 +  K LV TGTL  + R  A++ +   G  VS  +S
Sbjct: 651 QLRAAGIHWAEHEASAAADAAELPLAGKTLVLTGTLPTLGRDAAKDLIEAAGGKVSGSVS 710

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +KT  ++ G   GSKL+KA++LG+ I++E   L LL
Sbjct: 711 KKTHFVVAGAEAGSKLDKARELGLVILDEAGLLALL 746


>gi|320450863|ref|YP_004202959.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01]
 gi|320151032|gb|ADW22410.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01]
          Length = 674

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 251/715 (35%), Positives = 390/715 (54%), Gaps = 58/715 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK ++ L   I YH+  YY    P I D+EYD L R    +   FP+L   + P
Sbjct: 1   MTLEEARKRINELRDLIRYHNYRYYVLDAPEISDAEYDRLLRELKELEERFPEL---KSP 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G +   + F+ + H     SL+  + +E++R F  RI R   +K      +T+
Sbjct: 58  DSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFTLEEVRTFEERIERALGRK--GPFVYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  IPTIPR L   +PE +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGILVWGATRGDGETGEEVTQNLLTIPTIPRRLK-GVPERLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P    R      F+  GLG   
Sbjct: 175 VYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSLRQKDPRITARRGLRATFYALGLG-LE 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E   K Q ++L  +R  GFPV +G  +A    G+   Y      R +LP++ DG+V K+D
Sbjct: 234 ESGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKLD 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E SL ++LG  AR+PR+ I++KF  ++  TRLL +  Q+GRTG +TPV  LEPV I G+ 
Sbjct: 294 ELSLWRELGYTARAPRFAIAYKFPAEEKETRLLQVVFQVGRTGRVTPVGILEPVFIEGSE 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  TLHNE YI+ L           D+R+GD VLV +AG VIP+V+ ++  +R  + +P
Sbjct: 354 VSRVTLHNESYIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKEKRTGEERP 402

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             +P  CP C  R+V     K GK+   HRC   L C A++ E ++H+ SR A +I GLG
Sbjct: 403 IRWPETCPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIGGLG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++   +         +  D+  L R ++     +E +   G  S  NL   I + R+
Sbjct: 454 EKLIEKLLEKG-------LVKDVADLYRLKEEDLVGLERM---GKKSAGNLLRQIEESRS 503

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             LER +++LG+  VG  +AR+LA ++ +     +     +    +          VG++
Sbjct: 504 RGLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEASLEELLQVEE----------VGEL 553

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQRHK 665
            A+ I E  Q+P    A   L++ +  +    E     E   K L F  TG L +  R +
Sbjct: 554 TARGIYETLQDP----AFRDLIRRLKEAGVEMEAKERGEEALKGLTFVITGELSR-PREE 608

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  + +LGA V+  +SRKT  ++VG+ PGSKLEKA+ LGV  + EE+   L+++
Sbjct: 609 VKALLRRLGAKVTDSVSRKTSYLVVGEAPGSKLEKARALGVPTLTEEELYRLIEE 663


>gi|163782033|ref|ZP_02177032.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882565|gb|EDP76070.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 715

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 242/715 (33%), Positives = 390/715 (54%), Gaps = 54/715 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A++ +  L + I+YHD  YY  + P+I D EYD L R    +   +P+L     P+ P
Sbjct: 30  EEAQEYVQELREVINYHDYKYYVQASPVISDYEYDQLFRALRDLEKKYPELI---TPDSP 86

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++  E+  +   V H  P LSL+  +  E+LR F  R+         + + +++EPK 
Sbjct: 87  TQRVASEITGAFPTVRHYTPMLSLDNAYTEEELRDFDRRVREL---TGLDVVEYSVEPKY 143

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192
           DG  I + Y    FV  A RGDG +GED++  +R + TIP     +   I  IE+RGEV 
Sbjct: 144 DGAGIALLYRDDLFVRGATRGDGETGEDITNNLRTVRTIPLKAEFSRFGIRLIELRGEVL 203

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG--KTSEI 249
           I++ +F  +N+E +  G  P+ANPRNAA+G +R  NP ++  R L+  V+ +   +    
Sbjct: 204 INREEFRKMNEERLEEGLPPFANPRNAAAGSIRLQNPAEVAKRKLDAVVYQVSYVEPESR 263

Query: 250 FAKGQYEMLQKMRCLGF--PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                YE ++ +  LGF  P  + ++       ++ Y  E +  R   PY+IDG+V KV+
Sbjct: 264 HPNTHYEAIEMLHLLGFKTPFPD-MKLCKGIDEVIEYCREWEEKREEYPYEIDGMVVKVN 322

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                + LG  +  PRW I+ KF  KQA+T+L+D+  Q+GR G +TPV +LEPV IGG +
Sbjct: 323 RKEYYEVLGFTSHHPRWAIAFKFKPKQATTKLIDVVFQVGRVGTITPVGKLEPVEIGGVV 382

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +++ +L NED+I+            +DIR+GD VLV+RAG+VIP VV++I   R  D  P
Sbjct: 383 VSSVSLFNEDFIR-----------EKDIRIGDLVLVERAGDVIPYVVEVIKEARDGDEVP 431

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FP  CP C S++V+      G++  A RC   ++C AQ + RLKH+ SR+A +I GLG
Sbjct: 432 IEFPDRCPSCGSKLVK----LPGEV--AWRCI-NISCPAQVVLRLKHWGSREAMDIRGLG 484

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +      ++       ++   D++ L+         +  + GF + S  NLY++I + +N
Sbjct: 485 EATSKALYEKG----LVKDVGDLYYLK------VVDLMKLPGFAEKSAMNLYNAIQESKN 534

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L+R ++ LGIR+VG   A+ L          +Q I++I    +     L  +  +GD+
Sbjct: 535 RGLDRVLYGLGIRYVGLTTAKKL----------SQVIDSIWDLRDMPVEKLEAIEGIGDV 584

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I EF+    N+  +E L +     + R +      ++    VFTGTL+   R +A 
Sbjct: 585 VARSIKEFFSREENVKVIEKLDR-AGVKLRRTKLEKEGPLKGMVFVFTGTLRCCSRERAG 643

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721
           E V  LG   S  ++ KT  ++VG+ PG +KL +A+QLG+K++NEE FL +++ Y
Sbjct: 644 ELVESLGGTFSNSVTSKTTYLVVGEEPGRTKLRRAEQLGIKLLNEEDFLNMVKDY 698


>gi|320102706|ref|YP_004178297.1| NAD-dependent DNA ligase [Isosphaera pallida ATCC 43644]
 gi|319749988|gb|ADV61748.1| DNA ligase, NAD-dependent [Isosphaera pallida ATCC 43644]
          Length = 896

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/712 (32%), Positives = 387/712 (54%), Gaps = 59/712 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R  +  L +EI +H+  YY  + P+I D+EYD L +  +A+    PDL     P+ P  +
Sbjct: 15  RDRIERLRREIEHHNRLYYVEAAPVISDAEYDRLVKDLEALEAERPDLV---TPDSPTQR 71

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG        V H++P LS++  ++  +LR++ TR+ +     +   I + +E KIDG 
Sbjct: 72  VGGAPLGEFITVEHTVPMLSIDNAYSEAELREWATRVRKGLTSTE--PIHYVVELKIDGV 129

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYIS 194
            I +RYE G+ V A  RGDG  G+D++A  R I  IP VL       PE++EVRGEV+++
Sbjct: 130 AIGLRYENGRLVRAVTRGDGERGDDITANARTIHDIPLVLDERRTPAPEVLEVRGEVFMT 189

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           +++   LN      G  PYAN RN  +G L++L+P  +  R L F  HGLG+T  +  + 
Sbjct: 190 ESELARLNQLRREAGEPPYANSRNLTTGTLKQLDPRQVAKRRLRFTTHGLGETRGLELRS 249

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            + +L+++R  G P+     + +    +  +    K  R++L +  DG+V KVD+   ++
Sbjct: 250 YWAILERLRDWGLPIGPHHARYDDIEAVWRHIQTWKIQRASLDFRTDGVVVKVDDLGQRE 309

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG R++SPRW ++ K+  +QA T++  + IQ+G+TG LTPVA LEPV + G ++  A+L
Sbjct: 310 RLGTRSKSPRWALAFKYDAEQAITKVRGVTIQVGKTGKLTPVAELEPVLLAGTIVKRASL 369

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN + I             +D+R+GD V+V++AGE+IP+VV +   +R    QPF FP+ 
Sbjct: 370 HNPEEI-----------ARKDVRIGDTVVVEKAGEIIPQVVRVRTEDRDGTEQPFVFPTR 418

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCT-GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           CP  ++ VV+      G++    RC    L C  Q  E L  F  RDA +I+GLG++ +D
Sbjct: 419 CPCDRADVVK----PPGEVDV--RCPIPALQCHRQFKEWLAWFAHRDAMDIDGLGEKLID 472

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +       ++ PAD++ L          +  +   G  S  NL  +I   ++ SL+R
Sbjct: 473 QLVER----GLVKTPADLYRLD------VPTLAALDRMGKKSAENLVKAIAASKSRSLDR 522

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            +  L IRHVG   A +LA+ + + +   A  I+ + A           VP +G+I+A++
Sbjct: 523 LLVGLTIRHVGVGSAETLARKFGTLEALRAATIDELKA-----------VPDIGEIVAES 571

Query: 612 IVEFYQNPRNICAVEALLK-EVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           + ++ ++P NI  ++ LL   VSP+     + R        +  K +V TGTL  ++R  
Sbjct: 572 VFQYLRDPANIAMIDDLLSVGVSPTAPPVIVAR----AGLPLAGKTVVLTGTLPTLKRSA 627

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A++ +  LG  VS  +S+ T +++ G + GSKL  A +LGV +++E   L L
Sbjct: 628 AEDLIKSLGGKVSGSVSKTTSLVVAGADAGSKLVNALKLGVTVIDEATLLAL 679


>gi|189485424|ref|YP_001956365.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|254781446|sp|B1H072|DNLJ_UNCTG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|170287383|dbj|BAG13904.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 674

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 251/700 (35%), Positives = 381/700 (54%), Gaps = 56/700 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +E+  H+  YY+ + P I DSEYD L +  + I    P  A    P+ P  KI G ++
Sbjct: 13  LRKELIRHNGLYYESNNPEISDSEYDNLAKELEQIEKENPLFAL---PDSPTKKISGFVS 69

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
            S  ++ HS P LSL+  ++ ++  K+  RI +    K+     FT+EPKIDG   ++ Y
Sbjct: 70  SSFEQIKHSSPMLSLDNTYSQKETAKWYERIEKNLNNKNTE---FTIEPKIDGVSASLTY 126

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALN 202
             G     A RGDG +GED++  I+ +  IP  L   N P   E+RGEVYI K+DF  LN
Sbjct: 127 INGSLTAGATRGDGETGEDITENIKKVKNIPYKLKADNPPYFFELRGEVYIDKSDFRKLN 186

Query: 203 DE-MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           +E +++VG+K +AN RNAASG LR+ NP     R L FFVH LGK      + Q + LQ 
Sbjct: 187 EEILMSVGQK-FANSRNAASGSLRQKNPQITAERKLRFFVHSLGKIDGKQFESQSDFLQY 245

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
            R  GF + +  +  ++   I+ +   M + R  L Y+IDGLV KV+   LQK+LG   +
Sbjct: 246 CRKCGFQLQDNFKICHSLKEIMDFMEIMINNRDLLHYEIDGLVIKVNSLQLQKELGYTNK 305

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           SPRW I+ KF  KQA+T+L  I +Q+GRTGI+TP A LE V + G  I++ATLHN + I+
Sbjct: 306 SPRWAIAFKFPAKQATTKLSRIRVQVGRTGIITPSAILESVTLAGVTISHATLHNFEEIE 365

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            L           ++  GD VL++RAG+VIPK+V ++  E     +P   P  CP C S 
Sbjct: 366 RL-----------NVNEGDTVLIERAGDVIPKIVKVVKKENRGFFKP---PHNCPSCNSG 411

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +V++   +      A+RC     C AQ    L HFVSR+A +I+G GK  +D F   +  
Sbjct: 412 IVKENEEEV-----AYRCINP-ECPAQFRRHLIHFVSRNAMDIDGFGKAVIDQFLDRK-- 463

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYDSINKRRNISLERFIFSL 557
              I++ ADI+ L         K ++ +    F +   +NL  ++   +   L + +F+L
Sbjct: 464 --KIQVLADIYYL---------KYDDFIKLDLFKEKKTSNLMKAVAASKKHPLSKLLFAL 512

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR +G +++  +AK + S +          A  N       RVP +G I+A ++ EF++
Sbjct: 513 GIRRIGEKVSEIIAKKFKSME----------ALFNASIEDFTRVPEIGSILALSLKEFFE 562

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           N      ++ L+      I    +   ++ + K  V TG L+   R +A + +  LG  V
Sbjct: 563 NKTVRNVIDNLIAAGVNMIEPEAEQSGTQFDGKMFVLTGELKNHTREQAGKIIRSLGGKV 622

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           ++ +S+KTD I+ G N GSKL+KA++L VKI++E +F  L
Sbjct: 623 ASSVSKKTDYIVAGVNAGSKLKKAKELNVKIVDEAEFDIL 662


>gi|1352293|sp|P49422|DNLJ_THESC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|609276|emb|CAA82645.1| DNA ligase [Thermus scotoductus]
 gi|1093606|prf||2104272A DNA ligase
          Length = 674

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 250/718 (34%), Positives = 397/718 (55%), Gaps = 64/718 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK ++ L   I YH+  YY  + P I D+EYD L R    +   FP+L   + P
Sbjct: 1   MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEL---KSP 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G +   + F+ + H     SL+  +N ++L+ F  RI R   +  +    +T+
Sbjct: 58  DSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFNFDELKAFEERIGRALGR--EGPFAYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE G  V+ A RGDG  GE+V+  +  IPTIPR +   +PE +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEDGVLVWGATRGDGEVGEEVTQNLLTIPTIPRRVK-GVPERLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P    R      F+  GLG   
Sbjct: 175 VYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSLRQKDPRITARRGLRATFYALGLG-LE 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E   K Q ++L  +R  GFPV +G  +A    G+   Y      R +LP++ DG+V K+D
Sbjct: 234 ESGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKLD 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E SL ++LG  AR+PR+ I++KF  ++  TRLL +  Q+GRTG +TPV  LEPV I G++
Sbjct: 294 ELSLWRELGYTARAPRFAIAYKFPAEEKETRLLQVVFQVGRTGRVTPVGILEPVFIEGSV 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  TLHNE YI+ L           D+R+GD VLV +AG VIP+V+ ++  +R  + +P
Sbjct: 354 VSRVTLHNESYIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKEKRTGEERP 402

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             +P  CP C  R+V     K GK+   HRC   L C A++ E ++H+ SR A +I GLG
Sbjct: 403 IRWPETCPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIGGLG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINK 544
           ++ ++   +       ++  AD++ L++         E++LG    G+ S  NL   I +
Sbjct: 454 EKLIEKLLEK----GLVKDVADLYRLKK---------EDLLGLERMGEKSAQNLLRQIEE 500

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +   LER +++LG+  VG  +AR+LA ++ +     +     +    +          V
Sbjct: 501 SKGRGLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEASLEELLQVEE----------V 550

Query: 605 GDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           G++ A+ I E  Q+P  R++      LKE    +   E+   + ++    V TG L +  
Sbjct: 551 GELTARGIYETLQDPAFRDLV---RRLKEAGVVMEAKERGEEA-LKGLTFVITGELSR-P 605

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R + +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  + EE+   L+++
Sbjct: 606 REEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLIEE 663


>gi|283850424|ref|ZP_06367713.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B]
 gi|283574450|gb|EFC22421.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B]
          Length = 697

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 249/719 (34%), Positives = 374/719 (52%), Gaps = 59/719 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R  L++L   I +H+  YY    P I D+ YDAL R    +  A P+LA   DPN P  +
Sbjct: 9   RARLAALRDLIHFHNHRYYVLDDPQIEDAAYDALYRELVTLEAAHPELA---DPNSPTRR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFTLEPKIDG 136
           +GG +  S     H +   SL+   +  + + F+TR      ++D      F ++PK DG
Sbjct: 66  VGGAVLPSFDSKAHGLRMYSLDNAMSETEWQDFLTRAANKLDREDVAFERTFWVDPKFDG 125

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-------RVLSLNIPEIIEVRG 189
             + I YEKG +  A  RGDG  GEDV+  +R +  +P       R   L +PE++EVRG
Sbjct: 126 LALEILYEKGVYAGALTRGDGVRGEDVTENVRTVRNVPLDLRPHARQAGLPVPELLEVRG 185

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248
           EV +++  F  LN+     G K +ANPRNAA+G +R+L+     +R L FF +GLG+   
Sbjct: 186 EVVMTRQAFFELNERQREQGGKIFANPRNAAAGSVRQLDSRISASRPLTFFAYGLGRQDW 245

Query: 249 IFAKGQYE----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             A   +     ++  +R LG PV +  R      G+  Y+  +   R  LP++IDG+V 
Sbjct: 246 GEAASPWTTHSGVMAGLRSLGLPVASEGRMVEA-EGVYPYFQALGLRRQELPFEIDGVVA 304

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ+ LG   R+PR+ ++ KF   +A T L  ID+Q+GRTG+LTPVA LEPV++ 
Sbjct: 305 KVDSLPLQEALGFTDRAPRFALALKFPAHEAETVLRQIDVQVGRTGVLTPVALLEPVSLA 364

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  ATLHNED IK            +D+R GD V+V+RAG+VIP+VV +++ +R  D
Sbjct: 365 GVTVARATLHNEDEIK-----------AKDLREGDTVVVRRAGDVIPEVVKVVLEKRPAD 413

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A  F FP  CP C S  VRD      +  AA RC   LAC A     + +FVS+   +IE
Sbjct: 414 AAAFEFPHTCPACGSPAVRD------EGAAAWRCV-NLACPAMLRRGIAYFVSKAGLDIE 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN- 543
           GLG++ ++           ++ PAD+F+L   +     ++         S +N   ++  
Sbjct: 467 GLGQKWVETLIAKG----MVKTPADLFSLTEAELLFLDRM------AAKSASNFVAAVEA 516

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            R+  +L++ I +LGIR VG   AR+LA ++      A      +    D          
Sbjct: 517 ARQKATLQKLIAALGIRQVGTRTARTLADHFRDLDALAAATAEELTALPD---------- 566

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661
           +G  +A +I EF+ N  N   V A  K++        K ++S   +  K+ +FTG L  +
Sbjct: 567 IGPEVAASIREFFDNEANRQLV-ARFKDLGLWPVSEPKPIASAAPLAGKRFLFTGALPDM 625

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R  AQ  V   G  + + +S+K D ++ G +PGSKL KAQ LGV ++  E+F  LL +
Sbjct: 626 TREAAQALVEAAGGRIVSSVSKKLDYLVAGTDPGSKLAKAQALGVTVLTPEEFSSLLAE 684


>gi|154248881|ref|YP_001409706.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1]
 gi|190359256|sp|A7HJG6|DNLJ_FERNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154152817|gb|ABS60049.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1]
          Length = 681

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/713 (33%), Positives = 388/713 (54%), Gaps = 49/713 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+ ++E+  L +EI YH+  YY  ++P+I D EYD L +R   +   +P+L   + P+ P
Sbjct: 4   EKIKQEVEKLRKEIEYHNYRYYVLAQPVISDEEYDKLMKRLMELEEKYPEL---KTPDSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG++      V HS P LSL+  +N  ++R F  RI     +K    + +  E KI
Sbjct: 61  TQRVGGQLIEGFETVEHSEPMLSLDNTYNENEIRNFHERI-----RKVVRDVQYVAELKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I +RYE G  V A  RGDG  G+DV+A ++ + +IP  L L  P  IEVRGE+++ 
Sbjct: 116 DGVSIALRYENGLLVRAITRGDGLRGDDVTANVKTVKSIP--LRLPEPLTIEVRGEIFMP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F   N +    G  P+ANPRNA +G L  L+P+ +  R L+ F++ + K  +   K 
Sbjct: 174 VQYFEEFNRQREEEGLLPFANPRNATAGTLHLLDPSQVAQRKLDSFMYYIVKPQQYDLKT 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q++ L+ +  L F VN   +  ++   ++ Y+ E    R  L Y IDG+V KV++F  Q 
Sbjct: 234 QWDALKFLEKLHFKVNPHSKLLSSIEEVIDYWKEWTEKRKKLEYWIDGVVVKVNDFEQQN 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I+ KF  +Q  T++L+I  Q+GRTG +TPVA  EPV + G+++  A+L
Sbjct: 294 ELGWTAKSPRWAIAFKFPAQQVRTKVLNITFQVGRTGTITPVAEFEPVELEGSIVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN DYIK             DIRVGD V +++AG +IP++  ++   R  D      P  
Sbjct: 354 HNFDYIK-----------ENDIRVGDYVFIEKAGGIIPQISYVLKELRDGDEIETVPPEK 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   V ++    +G+ V A++C     C A+    ++ FVSR A +I+GLG + +  
Sbjct: 403 CPECGGPVGKE----SGEYV-AYKCLNP-HCPAKLKRHIEVFVSRQAMDIQGLGPKIISK 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                  A  ++  AD++ L      +   +  I G G   ++N+   I K +   +E+ 
Sbjct: 457 IVD----AGLVKDIADLYYL------NIFDLAQISGLGPKMISNILSEIEKSKQNPIEKL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +  LGI  VG +IA+ LAK Y S +  ++           D   L  +  +G+ IA+ IV
Sbjct: 507 LVGLGIPGVGEKIAKVLAKKYKSMEELSKA----------DIKELSEIEGIGEDIAKNIV 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           E++ +P+    +E L K    ++   E   S+ ++      TGTL+   R + + ++  L
Sbjct: 557 EYFNSPKTKEILEKLRK-AGVNLESAETTTSNILDGLTFCVTGTLENFSREEIKRFIESL 615

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           G   +  L++KTD ++VG NPGSKLEKA++ GVK++NE++FL +L++    L+
Sbjct: 616 GGHFTDNLTKKTDYLLVGTNPGSKLEKAKKFGVKVLNEQEFLEMLEKKGVELK 668


>gi|229551868|ref|ZP_04440593.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1]
 gi|258539286|ref|YP_003173785.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705]
 gi|229314812|gb|EEN80785.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1]
 gi|257150962|emb|CAR89934.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705]
          Length = 674

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 253/723 (34%), Positives = 391/723 (54%), Gaps = 65/723 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A  E++ L ++++     YY    P + D+ YD   R   A+  AFP L  
Sbjct: 5   PAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLVT 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    +++ 
Sbjct: 65  ---PDSPTQQVGDVINSDFAKVRHPIPMLSMGDVFSFEELSEWDARM----QANVGHAVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE G+ V  + RGDG+ GEDV+  +  I ++P+  +L  P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNIGEDVTKNVLTIASVPK--TLKRPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245
           RGE Y+ K  F  LN    A G  P+ANPRNAA+G LR+LNP  IT  R L+ F++ L  
Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPK-ITAGRELDTFIYTLID 234

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K Q+E +  M+ LGF  N     A+    I +Y  +  S R  LPY IDG+V K
Sbjct: 235 ADRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G
Sbjct: 295 VNDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  + 
Sbjct: 355 TTVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVKKRPANT 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P   P  CP C  ++V  L+ +      A RC   + C AQ  E+L HF SR+A NI+G
Sbjct: 404 PPAPIPEECPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDG 456

Query: 486 LGKQ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           LG +   QL           + ++  D+  L R    + T +E +  F + S+ NL ++I
Sbjct: 457 LGPKIIAQLQ----------AKKLVTDVADLYR---LTATDLEKLDKFKEKSINNLLNAI 503

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N  R  S+ER IF LGIRHVG + AR LA+++ S       ++ ++A + D    +  +P
Sbjct: 504 NNSRQNSVERLIFGLGIRHVGGKAARILAEHFGS-------LDELMAADQD---QVAAIP 553

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            +G  IA+A+V +++       VE L      L+   P+         S +  K +V TG
Sbjct: 554 NIGPTIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPT---RPAVSDSFVSGKTVVITG 610

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
              +  R +  + + QLGA V+  +S+KTD++I GD  GSKL KAQ L V IM+E   L 
Sbjct: 611 KFAEFSRPELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLT 670

Query: 717 LLQ 719
            L+
Sbjct: 671 NLK 673


>gi|213962174|ref|ZP_03390438.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno]
 gi|213955180|gb|EEB66498.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno]
          Length = 663

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/710 (33%), Positives = 374/710 (52%), Gaps = 59/710 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E++ H+  YY    P I D E+D   +   A+  A P+     D N P  +
Sbjct: 2   KEKIQQLREELNQHNYNYYILDNPTISDYEFDQKLKELQALEQAHPEFY---DENSPTVR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  S   V H     SL+  ++ EDL ++  RI +       + I FT E K DG 
Sbjct: 59  VGGTITKSFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTL---GSDQINFTCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + YE GK   A  RGDG  G+D++A +R I ++P  L  + PE   +RGE+ + K  
Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-----YLNFFVHGLGKTSEIFAK 252
           F  LN E IA G  P+ NPRN ASG L+  +  ++ +      L F V   G       K
Sbjct: 176 FENLNKERIAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGNTG------VK 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q+E L+K R  GF V N  +  ++   ++ + NE  + R TLPY+ DG+V KVD  + Q
Sbjct: 230 SQFESLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVIKVDSIAQQ 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  ++SPRW +++KF  +Q  T L  I  Q+GRTG +TPVA L+PV + G ++  A+
Sbjct: 290 EELGYTSKSPRWAMAYKFKAEQVDTILESISYQVGRTGAITPVANLKPVLLAGTVVKRAS 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L           DIR+GD V V++ GE+IPK+V + +++R  DAQP  + +
Sbjct: 350 LHNADQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVQYIT 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + ++R+         A H C    +C  Q   +++HF+SR A +IEGLG++ ++
Sbjct: 399 HCPECSTELIRNEGE------AQHYCPNTYSCPPQITGKIQHFISRKAMDIEGLGEETVE 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F+    A  I   AD++      + +  K+  +      S  N+   I K + I  ER
Sbjct: 453 QLFR----AGIIHTYADLY------EVTVEKLLPLERMAQKSAENIVKGIQKSKEIPFER 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGIR+VG  +A+ LA++Y           NI A  N     L+ V  +G+ IA ++
Sbjct: 503 VLFALGIRYVGETVAKKLARHY----------KNIEALENATIEQLVEVDEIGNQIATSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEY 669
           V F+ +  N   ++  LK         E++     +  K    V +G      R + +  
Sbjct: 553 VNFFADDYNRKLIDR-LKSYGLQFALSEESTEGHTDTLKGLTFVVSGVFHLYSRDELKAL 611

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + Q G  V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F  L+
Sbjct: 612 IEQHGGKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEFQSLI 661


>gi|86157121|ref|YP_463906.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123723230|sp|Q2INT9|DNLJ_ANADE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|85773632|gb|ABC80469.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 687

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/715 (33%), Positives = 377/715 (52%), Gaps = 58/715 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + I   D  YY   +P++ D+EYD L     AI    P+L  ++ P     ++ G  +
Sbjct: 13  LRERIRAADHAYYVLDQPVLADAEYDRLMHELQAIEAEHPELVTADSPT---QRVSGAPS 69

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               +V H  P LSL  + + ++L +F  R+ R     +  ++ + +EPK+DG  + + Y
Sbjct: 70  ERFERVVHREPMLSLGNVQSDDELHEFDARVRRLLGLPEGEAVGYVVEPKLDGLAVELVY 129

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPT------IPRVLSLNIPEIIEVRGEVYISKND 197
             G F   + RGDG +GEDV+A +R +        +P  L    P  +EVRGEV + K  
Sbjct: 130 RDGAFTGGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGTPPPRVEVRGEVLLFKEH 189

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N +++  G +P+ANPRNAA+G LR+L+      R L+F  +          +  +E
Sbjct: 190 FEAMNRQLVRAGDEPFANPRNAAAGTLRQLDWRVTARRPLSFVAYEALVPGGDPWRTHWE 249

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +   GF  N   R+      +++Y + M   R  LPYD DG+V KVD+   +++LG
Sbjct: 250 KLEALAAWGFETNPENRRCRGLGEVLAYRDRMAERRFELPYDTDGIVVKVDDLDWRRRLG 309

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++ PRW ++ K+  ++ +TR+  I   +GRTG+LTPV   +PV + GA++  ATLHNE
Sbjct: 310 AASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLSGAMVARATLHNE 369

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++            +DI  GD VLV+RAGEVIP+VV  +   R  + +PF FP+ CP+
Sbjct: 370 DEMR-----------RKDILEGDWVLVRRAGEVIPEVVKPLPERRTGEERPFRFPAECPV 418

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-------- 488
           C +RVVR+   K       +RCTG  AC AQ + R+ HF  R A +IEGLG+        
Sbjct: 419 CGARVVREEGEKV------YRCTGA-ACPAQLVGRICHFAQRRALDIEGLGEKLAAGLVE 471

Query: 489 --QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
             Q  DF   ++  A    +   +F+  R++Q +    E      + S  N+  ++ + R
Sbjct: 472 RGQVKDF---ADLYAVPFEVWQQLFSRPRKEQDAGAARE----LPEKSAQNMVAALERSR 524

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L RF+F+LGI  VG   A +LA+++        ++  I+  + +   +L  V  VG 
Sbjct: 525 STTLRRFLFALGIPQVGEATAATLARHF-------GDLARILDADEE---ALKGVRDVGP 574

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             A  I  + Q P+N   VE LL   V P     E         K +V TG L  + R  
Sbjct: 575 ETASEIRAWTQEPQNRRVVERLLAAGVRPEPEVVEAR--GPFAGKTVVLTGGLSAMSRDD 632

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  V + G  VS  +SRKTD+++ G+  GSKLEKA+ LGV+++ EE+F+ LL++
Sbjct: 633 AKAEVERRGGKVSGSVSRKTDLVVAGEEAGSKLEKARSLGVRVVGEEEFVRLLKE 687


>gi|11967289|gb|AAG42042.1| NAD-dependent DNA ligase [Aquifex pyrophilus]
          Length = 719

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/731 (32%), Positives = 392/731 (53%), Gaps = 55/731 (7%)

Query: 2   KKRQLI----PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA 57
           K R+L+     ++ LS+E+A++    L++ I +HD  YY  + P+I D +YD L R    
Sbjct: 13  KTRELLERIKSLKDLSLEEAKRLAEELKEVIRFHDYKYYVQASPVISDYDYDRLFRALKE 72

Query: 58  IAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF 117
           I   FP       P+ P  ++  E+      V H  P LSL+  +  E+L+++  R+   
Sbjct: 73  IERKFPQFI---TPDSPTQRVASEITGEFPTVKHYAPMLSLDNAYTEEELKEWDRRVREL 129

Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
                   + +T+EPK+DG  I + Y+   FV  A RGDG  GED++  ++ I TIP   
Sbjct: 130 ---TGFEVVEYTVEPKLDGAGIALVYKDDIFVRGATRGDGEYGEDITNNLKTIKTIPLKA 186

Query: 178 SLNI--PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-R 234
             +    ++ E+RGEV I+K +F  LN E I  G  P+ANPRNAA+G +R+ +P ++  R
Sbjct: 187 EFSRFGIKLAEIRGEVVINKEEFKKLNQERIEEGLPPFANPRNAAAGSIRQKDPKEVAKR 246

Query: 235 YLNFFVHGLG--KTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSI 291
            L   V+ L   +  E   K  YE L+ +  LGF  +    +       ++ Y  E +  
Sbjct: 247 RLEAVVYQLSYVEPPERDPKTHYESLKMLDTLGFKTLFKDTKLCRGIDEVIEYCKEWEEK 306

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R T PY+IDG+V KV++  L ++LG  +  PRW I++KF  ++A T+L+D+  Q+GRTG 
Sbjct: 307 RDTYPYEIDGMVVKVNDRRLYEKLGYTSHHPRWAIAYKFKPRRAVTQLVDVVFQVGRTGA 366

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPV +LEPV +GG  +++ +L NED+I+            +DIR+GD VLV+RAG+VIP
Sbjct: 367 ITPVGKLEPVQVGGVTVSSVSLFNEDFIR-----------EKDIRIGDYVLVERAGDVIP 415

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
            + D++  +R  + +   FP  CP C S +V+  +        A RC   + C AQ + R
Sbjct: 416 YIADVLKEKRSGEEREIVFPERCPSCGSELVKLPDE------VARRCI-NIGCPAQSVLR 468

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           +KH+ SR+A +I GLG   +   F              +  +          +  + GFG
Sbjct: 469 VKHWASREAMDIRGLGDATVKLLFNR----------GLVRDVGDLYYLKLLDLLRLPGFG 518

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL  +I + +N  ++R ++ LGIR+VG+  A+ +++           IN+I    
Sbjct: 519 ERSALNLLRAIEESKNRPIDRVLYGLGIRYVGSTTAKKISEI----------INSIWELK 568

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
           +     ++R+  VG  +A++I EF+  P N+  +E L K       +  + ++  ++ K 
Sbjct: 569 DIPIERIMRLEGVGYKVAKSIKEFFSVPENLKVLEKLEKAGVNLEKKKTEKIADVLKGKT 628

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTGTL+   R KA E V  LG   S  ++ +TD ++VG  PG +KLEKA++ GVK + 
Sbjct: 629 FVFTGTLECCSREKAGEIVESLGGKFSNSVTSRTDYLVVGKEPGRTKLEKAKKYGVKTIT 688

Query: 711 EEQFLFLLQQY 721
           EE+F+ +++ Y
Sbjct: 689 EEEFINMIKDY 699


>gi|46580019|ref|YP_010827.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81404693|sp|Q72BM7|DNLJ_DESVH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46449435|gb|AAS96086.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 799

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 245/718 (34%), Positives = 385/718 (53%), Gaps = 58/718 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+AR+  + L  ++  H+  YY+   P I D+EYDAL R    +   +P L    D   P
Sbjct: 37  EEARQRAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPAL---RDEASP 93

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE+   L K  H++   SL+  ++ ++   FI R+Y       D    F  +PK+
Sbjct: 94  TQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFIQRMY---NALPDAPSAFWCDPKM 150

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  + + YE G F  A  RG+G  GE V+A +R +  +P  L   ++P  IEVRGEV I
Sbjct: 151 DGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVVI 210

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           +K DF  LN    A G K +ANPRNAA+G +R+L+ T    R L F  +G+G+       
Sbjct: 211 AKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGGT 270

Query: 253 GQYE----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +     ++ ++R  GF      R   +   + +YY  + + R +L  +IDG+V K+D+
Sbjct: 271 APWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLDD 330

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+ LG  AR+PRW ++ KF   QA TRL DI +Q+GRTG+LTPVA LEPV +GG  +
Sbjct: 331 TEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVEV 390

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHNED I+            + + +GD VLV+RAG+VIP+VV  +V ER  D +PF
Sbjct: 391 SRATLHNEDEIR-----------AKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERPF 439

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C S VVR      G++  AHRC   + C A + + + HFVS+   ++ G+G+
Sbjct: 440 VFPENCPECDSPVVR----PQGEV--AHRCV-NVMCPAVRRQSIIHFVSKAGLDVRGVGE 492

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN-KRRN 547
           + +            +  P  +F L +       + E +   G  S  N   +++  R  
Sbjct: 493 RWVQQLVDG----GHVTSPVGLFLLTK---LDLMRFERM---GPTSAANFVTALDAARTG 542

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L R I +LGIRHVG + AR+LA       NF     ++ A    D  +L ++P +G  
Sbjct: 543 ATLVRLICALGIRHVGEQTARTLAA------NF----TDLDALREADAETLQQLPDIGPE 592

Query: 608 IAQAIVEFYQNPRNICAVEALL-------KEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +A +I  F+ N  N+  +E L        ++ +P        +   ++  K++FTG+L +
Sbjct: 593 VAGSIRSFFANEGNLELLERLRAIGLWPKRQDAPPASEGADAIVLPLQGLKVLFTGSLTR 652

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R +A++     GA +++ +++  D+++VG  PGSKLEKA++LG+++M E  F  +L
Sbjct: 653 VGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAML 710


>gi|332970057|gb|EGK09055.1| NAD-dependent DNA ligase LigA [Desmospora sp. 8437]
          Length = 670

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 244/717 (34%), Positives = 393/717 (54%), Gaps = 65/717 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A + + +L +EI  HD  Y+  ++P+I D EYDA+ R    +    P+L     P+ P 
Sbjct: 5   EAEQRIEALRREIHEHDHRYHVLNQPVISDQEYDAMMRELLGLEQEHPELV---TPDSPS 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE      KV H+ P LSL   +N E+L++F  RI R  +    + + +  E KID
Sbjct: 62  QRVGGEPLPYFEKVRHTQPMLSLANAFNFEELQEFDRRIRRLAEV---DGVDYVCELKID 118

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  ++IRYE+G  V  A RGDG +GE+++  ++ I ++P  L L     +EVRGE ++ +
Sbjct: 119 GLAVSIRYEEGVMVRGATRGDGTTGENITQNLKTIRSLP--LRLRDAVTLEVRGEAFLPR 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            +F  +N +  + G   +ANPRNAA+G LR+L+P     R L+ F++G+G+       G 
Sbjct: 177 KEFERINRQKESRGETLFANPRNAAAGALRQLDPKLTAERALDIFLYGIGEIHGTETPGT 236

Query: 255 Y-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           + E L  +  LG  VN           ++ + +  +  R  L YDIDG+V KVD+  L++
Sbjct: 237 HTESLDLLSRLGLKVNPDWVTVKGIDDVMQFIDHWREHREELGYDIDGIVIKVDDLELRE 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++  T L  ++I++GRTG +TP A L+PV + G  +  ATL
Sbjct: 297 RLGTTAKSPRWAIAYKFPAEEGVTVLRGVEIKVGRTGAVTPTALLDPVILAGTTVQRATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED+I+            ++I +GD V+VK+AG++IP+VV ++   R  + +P+  P+ 
Sbjct: 357 HNEDFIR-----------EKEILLGDHVIVKKAGDIIPEVVGVVQERRTGEEKPYQMPTE 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +VR      G++  A RC     C AQ  E + HFVSR A NIEGLG++ +  
Sbjct: 406 CPECGSELVR----LEGEV--ALRCINP-QCPAQTREGIIHFVSRGAMNIEGLGEKVVTQ 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISL 550
            F ++     +R PAD++ L         K E++L     G  SV NL  +I + +  S+
Sbjct: 459 LFNAD----LVRGPADLYDL---------KAEDLLPLERMGKKSVENLLAAIEESKQNSV 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ IF LGIR VGA+ A  LA+++         +  I+A + ++   L  V  +G  +A+
Sbjct: 506 EKLIFGLGIRFVGAKGALILAQHFGG-------LEAIMAADREE---LEAVDEIGPKMAE 555

Query: 611 AIVEFYQNPR--------NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           +I  ++  P             V  + K  +P       +  S    K +V TGTL+ + 
Sbjct: 556 SIETYFDKPEVKETLRRLEAAGVNMMYKGPAPV---QRGDSDSPFAGKTVVLTGTLESMS 612

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A + +   G  V+  +S+ TD +I G+  GSKL+KA+ LGV +++E+ FL +L+
Sbjct: 613 RKEAADRIEAQGGKVTGSVSKNTDYVIAGEKAGSKLKKARDLGVDVVDEQAFLAMLE 669


>gi|229137131|ref|ZP_04265750.1| DNA ligase [Bacillus cereus BDRD-ST26]
 gi|228646303|gb|EEL02518.1| DNA ligase [Bacillus cereus BDRD-ST26]
          Length = 589

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 230/627 (36%), Positives = 359/627 (57%), Gaps = 51/627 (8%)

Query: 96  LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155
           LSL   +N  DLR F  R+    Q  DD ++ +  E KIDG  +++ YEKG+F+  A RG
Sbjct: 2   LSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICELKIDGLAVSLHYEKGRFIQGATRG 58

Query: 156 DGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYAN 215
           DG +GED++  ++ I  IP  L LN    +E RGE Y+ K  F+ LN+E    G   +AN
Sbjct: 59  DGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEAYMPKRSFVKLNEEKEQNGEDVFAN 116

Query: 216 PRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274
           PRNAA+G +R+L+P     R L+ FV+GL    E       E L  +  LGF  N   R 
Sbjct: 117 PRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKTILSHSESLDFLGELGFKTNPNRRT 176

Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334
             T   +++Y  E +  R  L Y+IDG+V KVD+ +LQ+ LG  A+SPRW I++KF  ++
Sbjct: 177 CETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVALQESLGTTAKSPRWAIAYKFPAEE 236

Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394
             TRL  I++ +GRTG++TP A LEPV + G ++  A+LHNED I+            +D
Sbjct: 237 VVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDLIR-----------EKD 285

Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
           IR+GD V+VK+AG++IP+VV+++ ++R  + + +  P+ CP C+S +VR L  +      
Sbjct: 286 IRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEYHMPTHCPACESELVR-LEEEV----- 339

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514
           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F+++     IR  AD+++L 
Sbjct: 340 ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERVITQLFEAD----YIRTFADLYSLT 394

Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
           + Q     +      FG+ S TNL  +I   +  SLER +F LGIRHVGA+ AR+ A+++
Sbjct: 395 KEQLLQLER------FGEKSATNLVQAIENSKENSLERLLFGLGIRHVGAKAARTFAEHF 448

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
                   E  + +    ++ L  I    +G+ +AQ++V ++ N  ++  +    KE   
Sbjct: 449 --------ETMDALVKATEEELKAINE--IGEKMAQSVVAYFDN-EDVLELLQQFKEYGV 497

Query: 635 SIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           ++          +NV S    K +V TG L+ + R +A++ +  LG  V+  +S+ TD++
Sbjct: 498 NMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLV 557

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + G+  GSKL +A++  V++ NEE+FL
Sbjct: 558 VAGEAAGSKLAQAEKHNVEVWNEERFL 584


>gi|315223456|ref|ZP_07865313.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287]
 gi|314946629|gb|EFS98620.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287]
          Length = 662

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/702 (34%), Positives = 375/702 (53%), Gaps = 51/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E++ H+  YY    P I D E+D   +   A+  A+P+     D N P  +
Sbjct: 2   KEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEFY---DENSPTVR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  S   V H     SL+  ++ EDL ++  RI +       + I FT E K DG 
Sbjct: 59  VGGSVTKSFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTL---GSDQINFTCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + YE GK   A  RGDG  G+D++A +R I ++P  L  + PE   +RGE+ + K  
Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E IA G  P+ NPRN ASG L+  +  ++  R L+  ++ L   + I  K Q+E
Sbjct: 176 FENLNKERIAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGNTGI--KSQFE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V N  +  ++   ++ + NE  + R TLPY+ DG+V KVD  + Q++LG
Sbjct: 234 SLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  +Q  T L  I  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNA 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+GD V V++ GE+IPK+V + +++R  DAQP  + + CP 
Sbjct: 354 DQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREVDAQPVKYITHCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR+         A H C     C  Q   +++HF+SR A +IEGLG++ ++  F+
Sbjct: 403 CGTELVRNEGE------AQHYCPNAYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFR 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I   AD++      + +  K+  +      S  N+   I K + I  ER +F+
Sbjct: 457 ----AGIIHTYADLY------EVTVEKLLPLERMAQKSAENIVKGIQKSKEIPFERVLFA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LA++Y            I A  N     L+ V  +G+ IA +IV F+
Sbjct: 507 LGIRYVGETVAKKLARHY----------KTIEALENATVEQLVEVDEIGNQIASSIVNFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEYVTQL 673
            +  N   ++  LK        +E+    + +  K    V +G      R + +  + Q 
Sbjct: 557 ADDYNRQLIDR-LKGYGLQFSINEQATEGQTDTLKGLTFVVSGVFHLYSREELKALIEQH 615

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
           G  V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F
Sbjct: 616 GGKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEF 657


>gi|220915846|ref|YP_002491150.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254781252|sp|B8JD56|DNLJ_ANAD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219953700|gb|ACL64084.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 687

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/715 (33%), Positives = 372/715 (52%), Gaps = 58/715 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L   I   D  YY   +P++ D+EYD L     A+    P+L  ++ P     ++ G  +
Sbjct: 13  LRDRIRAADHAYYVLDQPLLADAEYDRLMHELQALEAEHPELVTADSPT---QRVSGAPS 69

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               +V H  P LSL  + + ++L +F  R+ R     D   + + +EPK+DG  + + Y
Sbjct: 70  ERFERVVHREPMLSLGNVQSDDELHEFDARVRRLLGLPDGEPVGYVVEPKLDGLAVELVY 129

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPT------IPRVLSLNIPEIIEVRGEVYISKND 197
             G F   + RGDG +GEDV+A +R +        +P  L    P  +EVRGEV + K  
Sbjct: 130 RDGAFTSGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGRPPPRVEVRGEVLLFKEH 189

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N +++  G +P+ANPRNAA+G LR+L+      R L+F  +          +  +E
Sbjct: 190 FEAMNRQLVRAGEEPFANPRNAAAGTLRQLDWRVTARRPLSFIAYEALLPGGDPWRTHWE 249

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+++   GF  N   R+      +++Y + M   R  LPYD DG+V KVD+   +++LG
Sbjct: 250 KLEELAAWGFETNAENRRCRGLAEVLAYRDRMAERRFELPYDTDGIVVKVDDLDWRRRLG 309

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++ PRW ++ K+  ++ +TR+  I   +GRTG+LTPV   +PV + GA++  ATLHNE
Sbjct: 310 AASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLSGAMVARATLHNE 369

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++            +DI  GD VLV+RAGEVIP+VV  +   R    QPF FP+ CP+
Sbjct: 370 DEMR-----------RKDILEGDWVLVRRAGEVIPEVVKPLPERRTGAEQPFRFPAECPV 418

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-------- 488
           C +RVVR+   K       +RCTG  AC AQ + RL HF  R A +IEGLG+        
Sbjct: 419 CGARVVREEGEKV------YRCTGA-ACPAQLVGRLCHFAQRRALDIEGLGEKLAAGLVE 471

Query: 489 --QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
             Q  DF   ++  A    +   +F+  R++Q +    E      + S  N+  ++ + R
Sbjct: 472 RGQVKDF---ADLYAVPFEVWQQLFSRPRKEQDAGAARE----LPEKSAQNMVAALERSR 524

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF+F+LGI  VG   A +LA+++           ++    + D  +L  V  VG 
Sbjct: 525 KTTLRRFLFALGIPQVGEATAATLARHF----------GDLARVMDADEEALKGVRDVGP 574

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             A  I  + Q P+N   VE LL   V+P     E         K +V TG L  + R  
Sbjct: 575 ETAAEIRAWTQEPQNRRVVERLLAAGVTPEAEVVE--ARGPFAGKTVVLTGGLSTMSRDD 632

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  + + G  VS  +SRKT +++ G++ GSKLEKA+ LGV+I  EE+F+ LL++
Sbjct: 633 AKAEIERRGGKVSGSVSRKTYLVVAGEDAGSKLEKARSLGVRIAGEEEFVRLLKE 687


>gi|307266289|ref|ZP_07547829.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918667|gb|EFN48901.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 662

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 250/709 (35%), Positives = 400/709 (56%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+    + P+ P 
Sbjct: 2   EPKERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---KTPDSPS 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE        TH +P LSL   ++  +LR F  R+     ++    + + +E KID
Sbjct: 59  QRVGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRV-----REAVGDVEYVVELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE G F   + RGDG  GE+V+  ++ I +IP  L L     + VRGEV++ +
Sbjct: 114 GLSVELIYENGIFTVGSTRGDGIVGENVTQNLKTIKSIP--LRLKDDASLVVRGEVFMPR 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN+E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L K      K  
Sbjct: 172 TSFEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTH 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ ++  GF V    ++ +    ++    E++++R  LPYDIDG V KV++   ++ 
Sbjct: 232 IETLEFLKEQGFKVIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREI 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG+ A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLH
Sbjct: 292 LGQTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NEDYIK            +DIR+GD V+V++AGE+IP+VV+++  ER    + F  P  C
Sbjct: 352 NEDYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C +  VR      G+  A  RCT GL C AQ L  + HF S+DA +IEGLG   ++  
Sbjct: 401 PECGALAVR----LPGE--AIRRCT-GLNCPAQLLRGIIHFASKDAMDIEGLGPAIINQL 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             S+    +I   AD++ L+        ++      GD SV NL ++I + +   L+R +
Sbjct: 454 L-SKGLIHNI---ADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLL 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGI  +G++ A+ +A+++       + ++NI+    +D+  L   P +G  +A++IV 
Sbjct: 504 FGLGINLIGSKAAQVIAEHF-------KTMDNIMKAKFEDFTQL---PDIGPKMARSIVS 553

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+   +N+  +E  LK    ++ +  K  VS+  E K  V TGTL+   R +A   + + 
Sbjct: 554 FFAEKQNVEIIEK-LKNAGVNMKKLSKGKVSNIFEGKTFVLTGTLENYTREEATRMIEER 612

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           G  V+  +S+KTD I+VG +PGSKL+KAQ+LG+KI++E+QF  +L+  N
Sbjct: 613 GGKVTNSVSKKTDYILVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGEN 661


>gi|311233982|gb|ADP86836.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris RCH1]
          Length = 818

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 247/721 (34%), Positives = 388/721 (53%), Gaps = 64/721 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+AR+  + L  ++  H+  YY+   P I D+EYDAL R    +   +P L    D   P
Sbjct: 56  EEARQRAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPAL---RDEASP 112

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE+   L K  H++   SL+  ++ ++   FI R+Y       D    F  +PK+
Sbjct: 113 TQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFIQRMY---NALPDAPSAFWCDPKM 169

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  + + YE G F  A  RG+G  GE V+A +R +  +P  L   ++P  IEVRGEV I
Sbjct: 170 DGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVVI 229

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           +K DF  LN    A G K +ANPRNAA+G +R+L+ T    R L F  +G+G+       
Sbjct: 230 AKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGGT 289

Query: 253 GQYE----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +     ++ ++R  GF      R   +   + +YY  + + R +L  +IDG+V K+D+
Sbjct: 290 APWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLDD 349

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+ LG  AR+PRW ++ KF   QA TRL DI +Q+GRTG+LTPVA LEPV +GG  +
Sbjct: 350 TEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVEV 409

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHNED I+            + + +GD VLV+RAG+VIP+VV  +V ER  D +PF
Sbjct: 410 SRATLHNEDEIR-----------AKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERPF 458

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C S VVR      G++  AHRC   + C A + + + HFVS+   ++ G+G+
Sbjct: 459 VFPENCPECDSPVVR----PQGEV--AHRCV-NVMCPAVRRQSIIHFVSKAGLDVRGVGE 511

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSIN-K 544
           + +            +  P  +F L        TK+ +++ F   G  S  N   +++  
Sbjct: 512 RWVQQLVDG----GHVTSPVGLFLL--------TKL-DLMRFERMGPTSAANFVTALDAA 558

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           R   +L R I +LGIRHVG + AR+LA       NF     ++ A    D  +L ++P +
Sbjct: 559 RTGATLVRLICALGIRHVGEQTARTLAA------NF----TDLDALREADAETLQQLPDI 608

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-------KEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           G  +A +I  F+ N  N+  +E L        ++ +P        +   ++  K++FTG+
Sbjct: 609 GPEVAGSIRSFFANEGNLELLERLRAIGLWPKRQDAPPASEGADAIVLPLQGLKVLFTGS 668

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L ++ R +A++     GA +++ +++  D+++VG  PGSKLEKA++LG+++M E  F  +
Sbjct: 669 LTRVGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAM 728

Query: 718 L 718
           L
Sbjct: 729 L 729


>gi|307152955|ref|YP_003888339.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 7822]
 gi|306983183|gb|ADN15064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7822]
          Length = 682

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 242/721 (33%), Positives = 391/721 (54%), Gaps = 64/721 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ R EL    Q+ SY    YY    PI+ D+ YD L R  + +   +P+L     P+ 
Sbjct: 12  VEQLRSEL----QKASY---AYYVLDNPIMEDAVYDQLYRELENLETQYPELI---TPDS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK--KDDNSIFFTLE 131
           P  ++G +++     V H IP  SLE  +N+E+  ++  R    WQ+   +     +  E
Sbjct: 62  PTQRVGDKLSEQFTSVKHHIPLYSLENAFNLEEFTRWQER----WQRIAPETKQFEYVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
            KIDG+ I + YE G  V    RGDG  GE+++  I+ I +IP R+ S + P  +EVRGE
Sbjct: 118 LKIDGSAIALTYENGLLVRGVTRGDGVVGEEITQNIKTIRSIPLRLQSDHPPARVEVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL---GKT 246
            ++   +F  +N E  A G   +ANPRNAA+G LR+L+P  + R  L FF + L      
Sbjct: 178 AFLPVEEFERINQEKAATGESLFANPRNAAAGTLRQLDPKIVDRRRLQFFAYTLYIVDTE 237

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           ++ + + Q+E L+ ++ +GF VN   +   +   +  YY    + R  LPY  DG+V K+
Sbjct: 238 NQSYPQTQWESLEFLQKIGFLVNPNRKLCQSLEDVEQYYQHWDTRRRNLPYMTDGVVVKI 297

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +++ LQKQLG   + PRW I+ K+A ++A TR+ +I + +GRTG +TP+A +EPV + G 
Sbjct: 298 NDYDLQKQLGFTQKFPRWAIALKYAAEEAPTRVKNITVNVGRTGAVTPMAIMEPVQLAGT 357

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D +  L           DIRVGD V++++AGE+IP+VV +I   R  + Q
Sbjct: 358 TVQKATLHNSDRVAQL-----------DIRVGDTVIIRKAGEIIPEVVRVISELRPANTQ 406

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+  P+ CP C S +VR   PK G+  A  RC    +C A     L H+ SRDA +I GL
Sbjct: 407 PYQMPTHCPECNSTLVR---PK-GE--AVTRCVNS-SCPAILRGSLVHWCSRDALDIRGL 459

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +    ++E     ++   D++ L+  Q      I ++   G  S  NL ++INK +
Sbjct: 460 GEKVVILLIENE----LVKSIVDLYGLKAEQ------IASLERMGTKSANNLVNAINKSK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                R ++ LGIR+VG   A+ L   + + +  ++            + SL  V  +G 
Sbjct: 510 QQPWSRVLYGLGIRYVGNVTAKILTDNFPTVEQLSRA----------SFASLESVYGIGS 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            IAQ++ ++++   N+  V+ L +     E +       ++  + ++ K  V TGTL  +
Sbjct: 560 EIAQSVSDWFKIEANLTLVKQLQQAGLQFETATVTKNTSESTPTPLKGKTFVITGTLPSL 619

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +R++AQ+ + + G  V+  +S KTD ++VG++ GSKL KAQQLG+  ++EE  L ++Q  
Sbjct: 620 KRNEAQQLIEEAGGKVTGSVSAKTDYLVVGEDAGSKLAKAQQLGIIQLSEEALLAMIQGK 679

Query: 722 N 722
           N
Sbjct: 680 N 680


>gi|26990965|ref|NP_746390.1| NAD-dependent DNA ligase LigA [Pseudomonas putida KT2440]
 gi|81439923|sp|Q88F25|DNLJ_PSEPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24985989|gb|AAN69854.1|AE016624_5 DNA ligase, NAD-dependent [Pseudomonas putida KT2440]
          Length = 776

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/621 (35%), Positives = 343/621 (55%), Gaps = 44/621 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP ++     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE      
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  ++ A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R   A+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPVEVPSAC 406

Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+      V R    +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTRLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++      D    I  PAD++ LQ  Q      +  + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLV---DEGL-IGSPADLYKLQFEQ------VVGLEGFAEVSTQKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALL 629
           A  I  F+++  N   ++ LL
Sbjct: 567 AYEIHNFFEDEHNQKVIQQLL 587



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 13/121 (10%)

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRH---EKNVSS--EIENKKLVFTGTLQK 660
           A A+ EF+++  N    + L +++   +   G H   EK V+    +  +  V TGTL++
Sbjct: 656 ADAVREFFKDEAN----QKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLER 711

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL-FLLQ 719
           + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+ F+ FL +
Sbjct: 712 MSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAE 771

Query: 720 Q 720
           Q
Sbjct: 772 Q 772


>gi|309782142|ref|ZP_07676872.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA]
 gi|308919208|gb|EFP64875.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA]
          Length = 813

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/682 (35%), Positives = 367/682 (53%), Gaps = 71/682 (10%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E++ +   YY   +P + D+EYD L R  +A+    P+L   + P+ P  ++GG + 
Sbjct: 20  LRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPEL---KTPDSPTLRVGGAVL 76

Query: 84  LSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMIT 140
                V H IP LS+  E        R F   + R     D D  + +  E K DG  I 
Sbjct: 77  PEFAAVRHVIPMLSIRTETDTTPNGARAFDASVRRELGLDDTDPPVEYAAELKFDGLAIG 136

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKND 197
           +RYE+G  V AA RGDG +GEDV+  IR I  IP  LS    ++P+++EVRGEVY+ ++D
Sbjct: 137 LRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEVYMRRDD 196

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG--- 253
           F  LN      G K + NPRN A+G +R+L+P     R L+FF +GLG+   +  KG   
Sbjct: 197 FEKLNVRQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEV--VGWKGMPG 254

Query: 254 -QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
               ML  ++  GFPV+          G+V +++ + + R +LP+DIDG+VYKV+  +LQ
Sbjct: 255 THSGMLDALQAFGFPVSAERAAVKGGDGLVEFHDAIGAKRDSLPFDIDGVVYKVNSLALQ 314

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG R+R PRW ++HK+  ++A T +  ID+Q+GRTG +TPVARL PV +GG  +TNAT
Sbjct: 315 RELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARLVPVFVGGVTVTNAT 374

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER----------- 421
           LHNED ++            +D+RVGD V+V+RAG+VIP+VV ++++ R           
Sbjct: 375 LHNEDEVR-----------RKDVRVGDTVVVRRAGDVIPEVVSVVLDRRPLDDVPGSDLF 423

Query: 422 ----HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
                P   PF  P  CP+C S VVR+     G+ VA  RC+GGL CSAQ+ E ++HF  
Sbjct: 424 NPRQQPKYPPFELPKTCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAG 477

Query: 478 RDAFNIEGLGKQ------QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           R   +IEGLG++      +LD+     D  + + +  D   ++RR           +  G
Sbjct: 478 RRMMDIEGLGERYIDNLVELDYVHGIAD-LYKLTL-EDFLEMKRRADERDGVKPETVSAG 535

Query: 532 DVSVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
            ++     NL + I   +   L RF+F+LGIRHVG   A++LA +  S     +    ++
Sbjct: 536 KIATKWAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAMIRRAPAPLL 595

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSE 646
               D          VG  +A+AI +F+  P+N  A++ALL+      G H  N  +  +
Sbjct: 596 LALPD----------VGATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHAPNAKLREK 645

Query: 647 IENKKLVFTGTLQKIQRHKAQE 668
           +E  +L  T  + K+   +A++
Sbjct: 646 LEPAELYATLGVPKLTATRAKQ 667



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +V TGTL  + R +A+  +   GA VS  +S+KTD ++ G++ GSKL KA++L V
Sbjct: 734 LAGKTVVLTGTLPNLTRDEAKAMLEAAGAKVSGSVSKKTDYVVAGEDAGSKLAKAEELNV 793

Query: 707 KIMNEEQFLFLLQQ 720
           K+++E   L LL++
Sbjct: 794 KVLDEAGMLALLKK 807


>gi|313893283|ref|ZP_07826858.1| DNA ligase (NAD+) [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442179|gb|EFR60596.1| DNA ligase (NAD+) [Veillonella sp. oral taxon 158 str. F0412]
          Length = 667

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/703 (33%), Positives = 375/703 (53%), Gaps = 46/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  ++N +++R F +R+ +    K      + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFASRVEKELGHKPS---AYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYLE-NAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEEGASIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +    F VN   R   T   ++   N  +  R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLKSLENFKFSVNPHYRVCQTIDDVIETINYWEEKRHDLPYDTDGMVIKVNSFDDQEALG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R     PF+ P+ CP+
Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR    + G+  AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPTVR----REGE--AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++  A  +    D++ L   Q  +  ++      G  S  NL  +I   ++  L+R ++ 
Sbjct: 459 NKLIANVV----DLYHLTVDQLVTMDRM------GKKSAENLVKAIGDSKSRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F                 L+ V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAAATIANVVQSMERFMTITKE----------ELVAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P +   +E L +          +   ++++ + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPAHAAIIEGLTQAGLKMTVDVVEAAGNQMDGEIVVLTGKLEIMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT +++ G++ GSKL KA +LG+++MNEE+F+ LL+
Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVMNEEEFVELLR 661


>gi|269798060|ref|YP_003311960.1| DNA ligase, NAD-dependent [Veillonella parvula DSM 2008]
 gi|269094689|gb|ACZ24680.1| DNA ligase, NAD-dependent [Veillonella parvula DSM 2008]
          Length = 667

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/704 (32%), Positives = 378/704 (53%), Gaps = 46/704 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  ++N +++R F  R+ +    K  +   + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFGNRVEKELGHKPSS---YVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLFLD-NAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P     R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITANRNLAFFAYAIGSEVGANIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +    F VN   R   T   ++   +     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLKSLENFKFSVNPHYRVCKTIDEVIEAIDYWGDKRHELPYDTDGMVIKVNNFDDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP+  LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPIGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R+    PF+ P+ CP+
Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR    + G+  AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVR----REGE--AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +  ++      G  S  NL  +IN  ++  L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAINDSKSRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F     +           L+ V  +G  +A +I+E+ 
Sbjct: 509 LGIRLIGSKAATTIANVVKSMERFMTITKD----------ELVAVEEIGPTMADSIIEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P ++  +E L +          +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPSHVAIIEGLTQAGLKMTVDVVEAAGNQLEGEIVVLTGKLEVMGRTEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL++
Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVLNEEEFVELLKE 662


>gi|256820386|ref|YP_003141665.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271]
 gi|256581969|gb|ACU93104.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271]
          Length = 662

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 239/702 (34%), Positives = 375/702 (53%), Gaps = 51/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E++ H+  YY    P I D E+D   +   A+  A+P+     D N P  +
Sbjct: 2   KEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEFY---DENSPTVR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  S   V H     SL+  ++ EDL ++  RI +       + I FT E K DG 
Sbjct: 59  VGGSVTKSFPTVIHEYRMYSLDNSYSKEDLEEWEQRIIKTL---GSDQINFTCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + YE GK   A  RGDG  G+D++A +R I ++P  L  + PE   +RGE+ + K  
Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F +LN E  A G  P+ NPRN ASG L+  +  ++  R L+  ++ L   + I  K Q+E
Sbjct: 176 FESLNKERTAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGNTGI--KSQFE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V N  +  ++   ++ + NE  + R TLPY+ DG+V KVD  + Q++LG
Sbjct: 234 SLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  +Q  T L  I  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNA 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+GD V V++ GE+IPK+V + +++R  DAQP  + + CP 
Sbjct: 354 DQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVKYITHCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR+         A H C     C  Q   +++HF+SR A +IEGLG++ ++  F+
Sbjct: 403 CGTELVRNEGE------AQHYCPNAYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFR 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I   AD++      + +  K+  +      S  N+   I K + I  ER +F+
Sbjct: 457 ----AGIIHTYADLY------EVTVEKLLPLERMAQKSAENIVKGIQKSKEIPFERVLFA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LA++Y            I A  N     L+ V  +G+ IA +IV F+
Sbjct: 507 LGIRYVGETVAKKLARHY----------KTIEALENATIEQLVEVDEIGNQIASSIVNFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEYVTQL 673
            +  N   ++  LK        +E+    + +  K    V +G      R + +  + Q 
Sbjct: 557 ADDYNRQLIDR-LKGYGLQFSINEQATEGQTDTLKGLTFVVSGVFHLYSREELKALIEQH 615

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
           G  V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F
Sbjct: 616 GGKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEF 657


>gi|301066103|ref|YP_003788126.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang]
 gi|300438510|gb|ADK18276.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang]
          Length = 674

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 243/720 (33%), Positives = 376/720 (52%), Gaps = 59/720 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLVT 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    + + 
Sbjct: 65  ---PDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+   L  P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPK--QLKQPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +     Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPVDTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V  L+ +      A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEVCPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +              ++  AD++ L      +   +  +  F + S+ NL  +IN  R
Sbjct: 458 GPK----IVAQLQAKHLVKDVADLYHL------TAADLAKLDKFKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +        IA           VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIAD----------VPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQ 659
            IA+AIV +++       V+ L+ ++  +       G  +  V  S +  K +V TG   
Sbjct: 558 TIAEAIVTYFK----AATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFA 613

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  R    + +  LGA V+  +S+KTD++I GD  GSKL KAQ L V IMNE + L  L+
Sbjct: 614 EFSRPALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLK 673


>gi|154498024|ref|ZP_02036402.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC
           29799]
 gi|150273014|gb|EDN00171.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC
           29799]
          Length = 664

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 235/720 (32%), Positives = 384/720 (53%), Gaps = 73/720 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E++ L  E++     YY    P + D ++D   RR + +  A PD    + P     ++
Sbjct: 5   QEIALLRAELNKASYEYYVLDNPTMSDYDFDHKLRRLEELEQAHPDQITEDSPT---RRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     +VTH +P  SL+ ++++E+L  F+ R+    Q+  D    F +EPK+DG  
Sbjct: 62  GGQVADGFQEVTHEVPLESLQDVFDLEELGDFVRRV----QESLDGKAEFDVEPKVDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y  G FV  A RGDG  GEDV+  ++ I ++P  L   IP++I VRGEVY+SK  F
Sbjct: 118 VALEYRDGLFVRGATRGDGRVGEDVTENLKTIRSLPLRLPEPIPQLI-VRGEVYMSKKVF 176

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-----------T 246
             LN+E    G   +ANPRNAA+G LR+L+P    +R L+  V  + K           T
Sbjct: 177 EQLNEEREIRGEALFANPRNAAAGSLRQLDPKVAASRKLDIVVFNIQKAEGAEFSTHTET 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +   + Q+ ++ +  C       G R A    G           R   PYDIDG V K+
Sbjct: 237 LDYLERQQFRVIPRTLCTSME-EIGTRIAAIGDG-----------REEFPYDIDGAVVKL 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + +K LG  A+ PRW  ++K+  +Q  + + DI +Q+GRTG+LTP A ++PV + G 
Sbjct: 285 NSLADRKILGSTAKFPRWAAAYKYPPEQKESVVEDIVVQVGRTGVLTPKAVVKPVRLAGT 344

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +TNATLHN+D+I             +DIR+GD VLV++AGE+IP++V ++  +R     
Sbjct: 345 TVTNATLHNQDFIT-----------EKDIRIGDTVLVQKAGEIIPEIVSVVKEKRPEGTV 393

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           P+  P  CP+C + V RD +        AH RCTG   C AQ L  L HF SRDA +I+G
Sbjct: 394 PYHLPDHCPVCGAPVARDED-------GAHIRCTGA-ECPAQLLRHLAHFASRDAMDIDG 445

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG   ++        A  ++ PAD+++L      +   +  +   G  S  NL  +I++ 
Sbjct: 446 LGPAVMEALIS----AGMVKTPADLYSL------APEAVAQLDRMGKKSAENLAAAIDRS 495

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L R +F+ GIR VG +  + LA ++ +       ++ ++A   +D+ +   VP VG
Sbjct: 496 KGAGLARLLFAFGIRQVGQKAGKILASHFST-------MDALLAATEEDFTA---VPDVG 545

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            I A+++ ++  + ++   ++A L+E    +   +      +  K  V TG+L++  R +
Sbjct: 546 AITAKSLWDWLHSHQSQHLIQA-LREAGVVMENTDAPTGDALTGKTFVLTGSLERFTRAE 604

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           A   +  LG  VS  +S+KT  ++ G+  GSKL+KAQ LG+ ++ EE+FL +L++   T+
Sbjct: 605 AGAQIEALGGKVSGSVSKKTSYVVAGEAAGSKLKKAQDLGIPVLTEEEFLIMLRELGATI 664


>gi|227535466|ref|ZP_03965515.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227186876|gb|EEI66943.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 674

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 243/720 (33%), Positives = 376/720 (52%), Gaps = 59/720 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAYPKLVT 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    + + 
Sbjct: 65  ---PDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+   L  P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPK--QLKQPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +     Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V  L+ +      A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEACPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +              ++  AD++ L      +   +  +  F + S+ NL  +IN  R
Sbjct: 458 GPK----IVAQLQAKHLVKDVADLYHL------TAADLAKLDKFKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +        IA           VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIAD----------VPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQ 659
            IA+AIV +++       V+ L+ ++  +       G  +  V  S +  K +V TG   
Sbjct: 558 TIAEAIVTYFK----AATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFA 613

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  R    + +  LGA V+  +S+KTD++I GD  GSKL KAQ L V IMNE + L  L+
Sbjct: 614 EFSRPALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLK 673


>gi|116494557|ref|YP_806291.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334]
 gi|122264017|sp|Q03AC3|DNLJ_LACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116104707|gb|ABJ69849.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334]
          Length = 674

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 243/720 (33%), Positives = 375/720 (52%), Gaps = 59/720 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLVT 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    + + 
Sbjct: 65  ---PDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+   L  P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPK--QLKQPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +     Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V  L+ +      A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEVCPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +              ++  AD++ L      +   +  +  F + S+ NL  +IN  R
Sbjct: 458 GPK----IVAQLQAKHLVKDVADLYHL------TAADLAKLDKFKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +        IA           VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIAD----------VPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQ 659
            I +AIV +++       V+ L+ ++  +       G  +  V  S +  K +V TG   
Sbjct: 558 TIGEAIVTYFK----AATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFA 613

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  R    + +  LGA V+  +S+KTDI+I GD  GSKL KAQ L V IMNE + L  L+
Sbjct: 614 EFSRPALTKQLEGLGAKVTGSVSKKTDILIAGDAAGSKLAKAQSLNVPIMNETELLANLK 673


>gi|239631844|ref|ZP_04674875.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526309|gb|EEQ65310.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 674

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 243/720 (33%), Positives = 375/720 (52%), Gaps = 59/720 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLVT 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    + + 
Sbjct: 65  ---PDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+   L  P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPK--QLKQPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 ERFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V  L+ +      A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEVCPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +              ++  AD++ L      +   +  +  F + S+ NL  +IN  R
Sbjct: 458 GPK----IVAQLQAKHLVKDVADLYHL------TAADLAKLDKFKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +        IA           VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIAD----------VPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQ 659
            IA+AIV +++       V+ L+ ++  +       G  +  V  S +  K +V TG   
Sbjct: 558 TIAEAIVTYFK----AATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFA 613

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  R    + +  LGA V+  +S+KTD++I GD  GSKL KAQ L V IMNE + L  L+
Sbjct: 614 EFSRPALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLK 673


>gi|317121135|ref|YP_004101138.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885]
 gi|315591115|gb|ADU50411.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885]
          Length = 764

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/602 (37%), Positives = 344/602 (57%), Gaps = 52/602 (8%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           +I +HD  YY   +P I D+ YDAL R    +   FP++     P+ P  ++GG+     
Sbjct: 34  QIRHHDYLYYVLDRPEIDDAAYDALMRELRELEARFPEIV---TPDSPTQRVGGKPAAPF 90

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
            +V H+ P LSL+  ++ E+L  F  R+ R         + +  E KIDG  I + YE+G
Sbjct: 91  ARVEHAEPMLSLDNAFSREELEAFDQRVRR----AVGGDVAYVAELKIDGLSIALTYEEG 146

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALND 203
           +FV  A RGDG +GEDV+A +R I ++P   R     +P+ +EVRGEVY++ + F  LN 
Sbjct: 147 RFVRGATRGDGEAGEDVTANLRTIRSLPLRLRDRERQVPQRVEVRGEVYMTFDAFRRLNQ 206

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL-GKTSEIFA--KGQYEMLQ 259
           E  A G+ P+ANPRNAA+G +R+L+P     R LN +V+ L G   +  A  + Q+E+LQ
Sbjct: 207 EQEARGQAPFANPRNAAAGSVRQLDPAVTAARSLNLWVYALAGWEGDPAAAPRSQWEVLQ 266

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +R  G PVN   R+  +   +++Y +E  + R  LPY IDG+V KVD+ + Q++LG  A
Sbjct: 267 TLRQWGLPVNPHARRCTSLDELLAYIDEWAARRHQLPYLIDGIVIKVDDLAQQRELGTTA 326

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           RSPRW I++KF  ++A TR+ DI + +GRTG LTPVA L+PV + G  ++ A+LHN DYI
Sbjct: 327 RSPRWAIAYKFPAEKARTRVRDILVSVGRTGALTPVAVLDPVLLAGTTVSRASLHNADYI 386

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           +            +D+R+GD V+V +AGE+IP+VV+++   R  D +PF+ P  CP C S
Sbjct: 387 R-----------EKDVRIGDLVVVHKAGEIIPEVVEVVKEARTGDERPFTMPERCPACGS 435

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            VVR      G+  AA RC    AC AQQLER++HF SRDA +IEGLG   ++       
Sbjct: 436 PVVR----VEGE--AATRCPNA-ACPAQQLERIRHFASRDAMDIEGLGPAVIEQLVAR-- 486

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +R  AD++ L+         +  +   G  S  NL  +I+  R   L R ++ LGI
Sbjct: 487 --GLVRDVADLYRLE------AEPVAQLERMGPKSAANLIAAIDASRARPLRRLLYGLGI 538

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           R VG  +A  LA+++ +       I+ ++     +   L+ VP +G  IA+++  F+++ 
Sbjct: 539 RFVGERVAGVLARHFGT-------IHRVMEAEPAE---LMAVPEIGPRIAESVAAFFRDE 588

Query: 620 RN 621
            N
Sbjct: 589 HN 590



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 47/77 (61%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
            V   +  K  VFTG L  + R +A+  V  LG   +  +SRKTD ++ G+  GSKL KA
Sbjct: 683 EVRERVAGKTFVFTGGLASMTRDEAEALVEALGGRATGSVSRKTDYVVAGEGAGSKLAKA 742

Query: 702 QQLGVKIMNEEQFLFLL 718
           ++LG+ +++E+ FL L+
Sbjct: 743 RELGIPVLDEQAFLRLV 759


>gi|191637997|ref|YP_001987163.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
           casei BL23]
 gi|254781352|sp|B3WD54|DNLJ_LACCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190712299|emb|CAQ66305.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
           casei BL23]
 gi|327382073|gb|AEA53549.1| DNA ligase [Lactobacillus casei LC2W]
 gi|327385217|gb|AEA56691.1| DNA ligase [Lactobacillus casei BD-II]
          Length = 674

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 243/720 (33%), Positives = 376/720 (52%), Gaps = 59/720 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLVT 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    + + 
Sbjct: 65  ---PDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+   L  P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPK--QLKQPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +     Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPVDTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V  L+ +      A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEACPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +              ++  AD++ L      +   +  +  F + S+ NL  +IN  R
Sbjct: 458 GPK----IVAQLQAKHLVKDVADLYHL------TAADLAKLDKFKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +        IA           VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIAD----------VPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQ 659
            IA+AIV +++       V+ L+ ++  +       G  +  V  S +  K +V TG   
Sbjct: 558 TIAEAIVTYFK----AATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFA 613

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  R    + +  LGA V+  +S+KTD++I GD  GSKL KAQ L V IMNE + L  L+
Sbjct: 614 EFSRPALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLK 673


>gi|319937197|ref|ZP_08011604.1| DNA ligase [Coprobacillus sp. 29_1]
 gi|319807563|gb|EFW04156.1| DNA ligase [Coprobacillus sp. 29_1]
          Length = 662

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 245/701 (34%), Positives = 386/701 (55%), Gaps = 58/701 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+  L  E +Y    YY    P + D EYD L +   AI +  P+   ++ P+    ++G
Sbjct: 8   EIKKLLNEYNYQ---YYVLDNPSVSDQEYDRLMQELQAIENQHPEWLTADSPS---QRVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G++  S  K+TH    LSL  I+N ++L  F  R+   +      ++ +  E KIDG  +
Sbjct: 62  GQVLDSFTKITHERMMLSLGNIFNEDELMAFDERVRETYP-----NVEYVCELKIDGLAV 116

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y  G+  YAA RGDG  GED++  ++ I +IP  L+++     EVRGE+++ K  F 
Sbjct: 117 SLVYADGRLDYAATRGDGTVGEDITHNVKTIKSIP--LTIDYDGDFEVRGEIFMPKKSFN 174

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E    G   +ANPRNAA+G +R+L+ T    R L+ F++ +   +E+      E L
Sbjct: 175 ELNEERAKAGEALFANPRNAAAGSVRQLDSTIAAKRKLDAFLYMVPTATEVGCTTHKEAL 234

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             ++ LGF  N     ++    + ++  EM   R TLPY+IDG+V KV+    Q +LG  
Sbjct: 235 DYIKELGFKTNPMTHVSSDIQDVWAFIQEMTEKRDTLPYEIDGIVIKVNNLEEQVRLGYT 294

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+ P+W I++KF  ++  T+L DI   IGRTG +TP A LEPV + G+ +  ATLHNED 
Sbjct: 295 AKVPKWAIAYKFPAEEVVTKLKDIIFTIGRTGQITPNAILEPVRVAGSTVQRATLHNEDN 354

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           +K            +DIR+GD V+V++AG+VIP+VV  +   R    + F    +CP C 
Sbjct: 355 VK-----------NKDIRIGDYVVVRKAGDVIPEVVRSLKERRDGSEEKFKMIEYCPHCG 403

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           SR+VR  N       AA+ C     C  +++ER+ HF SRDA NIEGLG++ ++ F+   
Sbjct: 404 SRLVRKDNE------AAYYCLND-QCDFKKIERIIHFASRDAMNIEGLGEKIIEQFY--- 453

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
           +  F   I  DI+ L + +Q    +I +I GFG  S+ NL  +I K +  S+E+ +F LG
Sbjct: 454 NLGFVKNIE-DIYDLYKHEQ----EIMDIEGFGKKSMDNLVAAIEKSKENSMEKLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I+ +GA++A +L+K          E  +I A        L+ +  VG+ I Q+I  F  +
Sbjct: 509 IKGIGAKMADNLSK----------EFKSIDAMLEASTAKLLSIKDVGETIVQSINHFRND 558

Query: 619 PRNICAVEAL--LKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           P    ++E L  LK +  ++   ++      S    + +  TGTL+ + R + ++Y+ +L
Sbjct: 559 P---ASLELLMNLKALGLNMNYLKETTLLQESIFNGQTVCITGTLELMTRKEMKDYLARL 615

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           GA V+  +S+ TD +I G + GSKLEKA QLGV ++ EE+F
Sbjct: 616 GANVTGSVSKNTDFLICGRDAGSKLEKANQLGVTVLTEEEF 656


>gi|330502846|ref|YP_004379715.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01]
 gi|328917132|gb|AEB57963.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01]
          Length = 786

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/644 (34%), Positives = 350/644 (54%), Gaps = 49/644 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +S L  E+  H+  YY   +P + D+EYD L R   A+    P+L     P  P  
Sbjct: 4   AAQRISELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELV---TPESPTQ 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTL 130
           ++GGE   +  +V H +P LSL   +  +DLR F   +             D   I ++ 
Sbjct: 61  RVGGEALSAFGEVRHEVPMLSLGNAFEEDDLRAFDRSVQNGLGVSGGDLFGDGAEIEYSC 120

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           EPK+DG  +++RYE G+ V  A RGDG +GED+++ +R I  +P ++     P+++EVRG
Sbjct: 121 EPKLDGLAVSLRYEHGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLQGEGWPQVLEVRG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV++ K+ F  LN     +G K +ANPRNAA+G LR+L+P    +R L F  +G+G+ S 
Sbjct: 181 EVFMPKSGFEELNARQAEIGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQVSG 240

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q  MLQ+++  G P++  ++ A      + YY ++   R +L YDIDG+V+KV+ 
Sbjct: 241 ELPGTQVAMLQQLKAWGVPISRELKLAKGVEACLDYYRDIGQRRMSLAYDIDGVVFKVNN 300

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+QLG RAR+P W I+HKF  ++  T LLD++ Q+GRTG +TPVARL PV + G ++
Sbjct: 301 IEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLHPVKVAGVMV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
            NATLHN D +  L            + +GD V+++RAG+VIP+V+ ++   R  +A+P 
Sbjct: 361 ANATLHNMDEVARL-----------GVMIGDTVIIRRAGDVIPQVMAVVPERRPENARPV 409

Query: 429 SFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             P  CP+C S V R   +    GK      + +RC G L+C AQ  + + HFVSR A +
Sbjct: 410 QIPEQCPVCGSAVERTQLVRRSKGKESLSEGSVYRCVGRLSCQAQLKQAIIHFVSRRAMD 469

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG + ++     +     I  PAD++ L   Q      I  + GF +VS   L  +I
Sbjct: 470 IEGLGDKTIEQLVDEK----LIGSPADLYKLTFEQ------IIGLEGFAEVSSNKLLKAI 519

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +  +L RFI++LGI  VG E A+ LA+   S +   + +  ++ +          +P
Sbjct: 520 EDSKRPALARFIYALGIPDVGEETAKVLARSLASLERVREALPQVLTY----------LP 569

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
            +G  +A  I  F+++  N   + ALL E    + + E  +S+E
Sbjct: 570 DIGLEVAHEIHSFFEDEHNQQVISALLGECGLEL-QEEGELSAE 612



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 14/155 (9%)

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNICAVEALLKEV 632
           + Q  A+   ++      DWL + +   + +  A+A+ EF+   +N +  CA+E  L++ 
Sbjct: 635 AAQKLAERFGSLEGVLGGDWLDMRQA--LPEKQAKAVREFFDSVENAQLACAIEQQLRD- 691

Query: 633 SPSIGRH---EKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
               G H   EK V+    +  +  V TGTL+ + R  A+  +  LGA V+  +S KT  
Sbjct: 692 ---FGMHWESEKKVAEGLPLAGQTWVLTGTLEVMSRDVAKGKLESLGAKVAGSVSAKTHC 748

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++ G   GSKL KA +LGVK+++E QFL  L+ Y 
Sbjct: 749 VVAGPGAGSKLAKASELGVKVLDEAQFLDQLKAYG 783


>gi|289422752|ref|ZP_06424592.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L]
 gi|289156931|gb|EFD05556.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L]
          Length = 700

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 248/720 (34%), Positives = 382/720 (53%), Gaps = 60/720 (8%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I I +L I+ AR  +  L   ++YH D YY    P I D +YD + R    +   +PDL 
Sbjct: 18  IDIGSLDIDGARDLVGDLTYTLNYHSDSYYNKDNPEISDYQYDRMMRCLIGLEDKYPDLK 77

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  ++GG       +  H  P LSL  +++ E++R F  R+    +      +
Sbjct: 78  A---PDSPSVRVGGRALEKFDQYRHQRPMLSLGNVFSEEEIRDFDRRV----RSSVSGDV 130

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            + +E KIDG  + + Y++G     A RGDG  GE+V+  I+ I TIP  + ++    + 
Sbjct: 131 NYVVEFKIDGLSVGLTYDQGVLQIGATRGDGFIGENVTDNIKTIKTIP--IKIDEDRKLI 188

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
            RGEVYISK DF A+N   I      YANPRN A+G LR+L+      R L+ F+  L  
Sbjct: 189 ARGEVYISKADFEAVNAYQIDHDLPVYANPRNLAAGSLRQLDSRLAAKRPLDIFIFNLEN 248

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             E+  K   E  + M  LG  +N G +       ++ +       R  L YDIDG+V K
Sbjct: 249 MDELGIKKHSESFEYMESLGLKINKGYKLCTNIDEVIDHIEYWTDKRGQLDYDIDGMVIK 308

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    ++ LG  A+SPRW  ++KF  ++  T+LLDI+I++GRTG LTP A LEP+ + G
Sbjct: 309 VDSLDQREVLGFTAKSPRWATAYKFPAEKKKTKLLDIEIEVGRTGTLTPTAVLEPIRLAG 368

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A+LHNEDYIK            RDIR+GD VLV++AGE+IP+V+++  +ER    
Sbjct: 369 TSVSRASLHNEDYIK-----------ERDIRIGDTVLVQKAGEIIPQVLEVDFDERDGSE 417

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F  P  CP+C    VR      G+  AA +C   ++C AQ    + HFVSRDA +IEG
Sbjct: 418 IVFEMPKHCPVCGEETVR----LEGE--AAVKCI-NISCPAQIRRGIIHFVSRDAMDIEG 470

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G+  +      E     I+  AD++ L          +E +   G  SV NL  SI K 
Sbjct: 471 MGESIVKLLLDKE----LIKDIADLYYLD------PNDLEQLERMGKKSVANLMASIEKS 520

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L R I  LGI+ VG + A+ LAK Y         ++ I+A +++D   LI++   G
Sbjct: 521 KTNELWRLINGLGIKFVGLKGAKLLAKAY-------NNLDEIMAASSED---LIKIDEFG 570

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-------IENKKLVFTGTL 658
            I++ ++ +F++  +N   +E L +      G + +N+  E        E  K+V TGTL
Sbjct: 571 TIMSDSVEKFFEEDKNKETIEKLRR-----AGLNFENIKEEKTDRPMLFEGMKIVLTGTL 625

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             ++R+ A++ +  LG   ++ +S+ TD ++ G+  GSKL+KA  LGVK+++E +F+ +L
Sbjct: 626 PTMKRNDAKKIIEDLGGRATSSVSKSTDFVLAGEEAGSKLDKAISLGVKVIDEARFVSIL 685


>gi|21231024|ref|NP_636941.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768971|ref|YP_243733.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992085|ref|YP_001904095.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|81305065|sp|Q4UTB0|DNLJ_XANC8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81794799|sp|Q8PAB5|DNLJ_XANCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254782312|sp|B0RUY2|DNLJ_XANCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21112648|gb|AAM40865.1| DNA ligase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66574303|gb|AAY49713.1| DNA ligase [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733845|emb|CAP52051.1| DNA ligase (NAD(+)) [Xanthomonas campestris pv. campestris]
          Length = 833

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 266/849 (31%), Positives = 419/849 (49%), Gaps = 166/849 (19%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + + +L Q I   +  Y+   +P I D EYD L R  +A+  A P+LA ++ P     ++
Sbjct: 9   QRIDALRQRIEDANYRYHVLDEPQIADVEYDRLLRELEALEAAHPELATADSPT---QRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G        +V H +P LSL   ++ E++ +F+ RI    ++K      F  EPK+DG  
Sbjct: 66  GYLAASRFAEVRHVLPMLSLGNAFSDEEVAEFVRRISERLERKQP---VFCAEPKLDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           I++RYE+G+FV  A RGDG +GEDVSA +R +  IP R+     PE++EVRGEVY+ +  
Sbjct: 123 ISLRYEQGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGTGWPEVLEVRGEVYMPRAA 182

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQY 255
           F A N +M   G K  ANPRN A+G LR+L+      R L+FF +G+G+ ++        
Sbjct: 183 FEAYNAQMRLQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVADGALPPTHS 242

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            ML ++R  GFPV+  V       G+++YY  +   R  LP+DIDG+VYK+D+ + Q+++
Sbjct: 243 TMLAQLREWGFPVSQLVEVVQGSEGLLTYYRRIGEARDGLPFDIDGVVYKLDDLAGQREM 302

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN
Sbjct: 303 GFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVVVTNATLHN 362

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  LD           +RVGD V+V+RAG+VIP+V  ++  +R      +  P+ CP
Sbjct: 363 ADQIARLD-----------VRVGDTVIVRRAGDVIPEVAGVVAEQRPAGTHAWQMPTQCP 411

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE----------- 484
           +C S +VR+     G+  A  RC+G L C AQ+ E  +HFVSR A +++           
Sbjct: 412 VCGSEIVRE----EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLV 465

Query: 485 --GLGKQQLDFFFKSEDPAFSIRI--PAD---IFTLQRRQQTST---TKIE-NILGFG-D 532
             G+ +   D +  + D    +R+   AD    F  + R+  +     ++E  ++G G D
Sbjct: 466 DSGVVQGVADLYLLNVDQLLQLRLISTADSPHAFLREAREHLAAGAYAQVEQTMVGIGVD 525

Query: 533 VS--------------------------------VTNLYDSINKRRNISLERFIFSLGIR 560
           ++                                  NL ++I   R+ +LERF+F+LGI 
Sbjct: 526 LAGVQPAPQTWQADLLRAGLPAFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIE 585

Query: 561 HV--------------------------------GAEIARSLAKYYLSYQNFAQEINNII 588
           HV                                G E+ARSL  ++    N  Q I++++
Sbjct: 586 HVGESTAKALSAWFGELDVIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGN-QQAIDDLL 644

Query: 589 --------AHNNDD----------WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA--L 628
                   AH               L  + +P V  + AQ +     +   + A EA  L
Sbjct: 645 QRGVRIGDAHPPSPKLRGALSFAVLLEDLDIPKVTPVRAQQLAAATASFDALIASEADPL 704

Query: 629 LKEVSPS---------IGRHEKNV-----------------------SSEIENKKLVFTG 656
           L+   P+         + R E                          +  ++ + +V TG
Sbjct: 705 LQAGVPAPVIASLQQWLARPENAALATAAQRAMDALLAQLPQADAVQAGPLDGQTVVITG 764

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L 
Sbjct: 765 TLAALTRDAAKQRLESLGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLA 824

Query: 717 LLQQYNTTL 725
            L ++   +
Sbjct: 825 FLSEHGQAV 833


>gi|294793797|ref|ZP_06758934.1| DNA ligase, NAD-dependent [Veillonella sp. 3_1_44]
 gi|294455367|gb|EFG23739.1| DNA ligase, NAD-dependent [Veillonella sp. 3_1_44]
          Length = 667

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 235/704 (33%), Positives = 375/704 (53%), Gaps = 46/704 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+   S   + P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVS---SSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  +++ +++R F +R+ +    K      + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFASRVEKELGHKPSA---YVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRIGEDVTANVRTIKSIPLYLE-NAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEVGANIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +LQ +    F VN   R   T   ++   N     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLQSLETFKFSVNPHYRVCKTIDEVIDAINYWGEKRHELPYDTDGMVIKVNSFDDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETVLKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R+    PF+ P+ CP+
Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR    + G+  AA RCT    C A + E++ HFVSRDA NI+GLG   ++    
Sbjct: 406 CESPAVR----REGE--AAVRCTNK-HCPAIEKEQIIHFVSRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +  ++      G  S  NL  +I   +   L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAIADSKTRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F                 L+ V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAAGTIANVVKSMERFMTITKE----------ELVAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P ++  +E L            +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPAHVEIIEGLTAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL++
Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLRE 662


>gi|258592875|emb|CBE69184.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [NC10
           bacterium 'Dutch sediment']
          Length = 684

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 244/720 (33%), Positives = 387/720 (53%), Gaps = 66/720 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R ++  L Q I  H+  YY   +P I D+E+D L +R   +    P+L     P+ P  +
Sbjct: 8   RAQVDDLRQLIRRHEYLYYVLDRPEITDAEFDTLYQRLQTLETQHPELI---TPDSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG        V H    LSL+  +N E+LR+F  RI R    +      + +EPK+DG 
Sbjct: 65  VGGRPVEGFASVQHKAAMLSLDNAYNAEELREFEARIKRALPGE---RFTYVVEPKVDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEVYISK 195
            + + YE G+ V  A RGDG  GEDV+  +  +  IPR L   L     +EVRGE++I +
Sbjct: 122 SVALLYEGGRLVRGATRGDGRYGEDVTQNLMTVRGIPRYLHGPLAACAALEVRGEIFIWR 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYLNFFVHGLGKTSEIFAKG 253
             F  LN E+ A G +P+ANPRNAA+G +R+ +P  T++ R L+ F++G+          
Sbjct: 182 QAFEKLNRELEAEGEEPFANPRNAAAGSVRQKDPRITEVRR-LDIFIYGVSYAEPDPFTE 240

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFH----------GIVSYYNEMKSIRSTLPYDIDGLV 303
            ++ + ++   GF ++   R+ NT            G++  Y E+++ R  +  D DG+V
Sbjct: 241 HWQTMGQLLEAGFLLDPQDRK-NTLERYRRRCADIDGVIQAYLEIEAARDEIGCDCDGVV 299

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD    Q++LG     PRW +++KF  +QA++ +  ID+ +GRTG LTP A L+PV I
Sbjct: 300 VKVDAIEQQRRLGSTTHHPRWAVAYKFPARQATSIIRKIDVNVGRTGALTPTALLDPVEI 359

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            GA I+ ATLHN D I+ L           DIR GD VL++RAG+VIP ++ +I  +R P
Sbjct: 360 AGATISRATLHNADEIERL-----------DIREGDTVLIERAGDVIPHILRVIQEKRPP 408

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+ PF FP  CP+C ++  R      G++V+  RCT   AC A+  E L HF +R A +I
Sbjct: 409 DSTPFCFPGQCPVCNAQAFR----PEGEVVS--RCTNS-ACLARLKESLLHFGARRAMDI 461

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           E LG+  ++     +     +R  AD++ L          +  +      S TNL+++I 
Sbjct: 462 EHLGEAVVEQLVDRK----LVRELADLYRL------DVATLAELERLAQKSATNLHNAIQ 511

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +   L R +F+LGIR+VG  +A  LA++Y S     Q     +A           +  
Sbjct: 512 GSKGRGLSRLLFALGIRYVGEHVATILARHYGSMDRLEQAPEEELAE----------IFG 561

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQK 660
           +G  IAQ++  +++ P N   +E  L+EV  S+   E  V++E   +  K  V TG L+ 
Sbjct: 562 IGPRIAQSVALYFRQPENRRQIEQ-LREVGVSM--KEAGVTAEPRPLAGKTFVLTGGLEG 618

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R +A+E + ++G  V++ +S+KTD ++VG +PGSK + A++LGV  ++E  F  L+ +
Sbjct: 619 LTRDEAKELIVRVGGRVTSTVSKKTDFVVVGKDPGSKFDDAKRLGVPTLDEVAFKELVSR 678


>gi|293401241|ref|ZP_06645385.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305367|gb|EFE46612.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 662

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 242/697 (34%), Positives = 388/697 (55%), Gaps = 53/697 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L +++  +   YY   +P + D+EYD   +    +   +P   +  DPN    ++GG +
Sbjct: 9   ALRKQLDTYAYEYYVLDQPSVPDAEYDQAYQELLKLEDTYP---QYRDPNSITQRVGGVV 65

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
             +  KVTH    LSL   +N+EDL+ F  R+     K     + + +E K+DG  I++ 
Sbjct: 66  LDAFTKVTHKQQMLSLSNAFNLEDLQAFDERVRSIVPK-----VSYVVELKMDGLAISLH 120

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVYISKNDFLA 200
           Y  G+FV A  RGDG  GEDV+  +R I +IP    ++I  +  +EVRGEV++ K  F  
Sbjct: 121 YHDGRFVQAVTRGDGFVGEDVTNNVRTIASIP----MHIERMGDVEVRGEVFMPKKSFAE 176

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           LN +    G   +ANPRNAA+G +R+L+     +R L+ F++          +   E L+
Sbjct: 177 LNAQREKNGEDVFANPRNAAAGSIRQLDSKIAASRKLDAFLYYYEDALGAGIQTHEEALE 236

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            M  L   VN   R  N+   + S+  EM   R+ LPY+IDG+V KV+E +  +QLG   
Sbjct: 237 TMEQLHIKVNPLRRVCNSMDEVWSFIQEMSEQRNDLPYEIDGMVIKVNELTAWEQLGTTV 296

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++PR+ I++KF  ++  T+LLDI + +GRTG +TP A L PV + G  ++ A LHNED I
Sbjct: 297 KAPRYAIAYKFPAEEVVTKLLDIVLTVGRTGRITPNAVLAPVRVAGTSVSAAQLHNEDMI 356

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           K            +DIR+ D V+V++AG++IP+VV  +++ R+     + FP  CP+C S
Sbjct: 357 K-----------EKDIRIQDDVVVRKAGDIIPEVVGPLLDRRNGTQARYVFPKECPVCGS 405

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +VR  +       AAH C     C A+ +E + HF SRDA +I+ LG ++++FF K   
Sbjct: 406 ALVRLSDE------AAHYCINQ-DCPARVVESIIHFASRDAMDIDTLGDKKVEFFHKEG- 457

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +    DI+ L+  ++T    I  + GF + S   L D+I   +   LE  ++ LGI
Sbjct: 458 ---LLNTIEDIYHLKDHKET----ILQMEGFKERSYQKLIDAIEASKQNPLEDLVYGLGI 510

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           R VG + A+ LAK++L+       +  ++A + ++   L+ +  +GDI AQ+IV F++ P
Sbjct: 511 RQVGKKAAKVLAKHFLT-------MEKLMAASEEE---LVAIKDIGDITAQSIVAFFREP 560

Query: 620 RNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           +N+  ++  L+     +   E+ +  S    K +V TG+LQ++ R++A+E +  LGA VS
Sbjct: 561 KNVELIDH-LRGFGLRMDSEEEIIQESMFTGKTVVLTGSLQQMTRNEAKELLESLGANVS 619

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
             +S+KTD++I G+  GSKL KAQ LGV  M+E  FL
Sbjct: 620 GSVSKKTDLVIYGEAAGSKLTKAQSLGVATMDEATFL 656


>gi|205372454|ref|ZP_03225267.1| NAD-dependent DNA ligase LigA [Bacillus coahuilensis m4-4]
          Length = 635

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 244/674 (36%), Positives = 363/674 (53%), Gaps = 53/674 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L Q ++  +  YY   KP + D EYD+  +   AI   FP+L   + P+ P  
Sbjct: 6   AEERVKELHQTLNEWNYAYYVLDKPQVSDQEYDSKLQELIAIEQEFPEL---KTPDSPSE 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +IG ++     KV H IP LSL   +N EDL+ F  +I    +++  ++  +  E KIDG
Sbjct: 63  RIGAQVLEGFTKVQHDIPMLSLGNAFNEEDLKDFDRKI----RERVGDNFAYVCELKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I+++YE G FV  A RGDG  GED++A +R I +IP  L L     IEVRGE ++ K 
Sbjct: 119 LAISLKYEDGLFVQGATRGDGTIGEDITANLRTIRSIP--LRLKDAVTIEVRGEAFMPKR 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
            F++LN+     G +P+ANPRNAA+G LR+L+P    +R L+ F++ +    E+      
Sbjct: 177 SFVSLNEAKDEAGEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYSIANGEEVGMTEHA 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L  +  LGF  N   RQ  T   ++ Y  E    R  L Y+IDG+V KV+ FS Q +L
Sbjct: 237 KALAYLDSLGFKTNPLRRQCETIEEVMMYVEEWTEKRQDLAYEIDGIVIKVNSFSQQDEL 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  T L DI++ +GRTG +TP A LEPV + G  +  A+LHN
Sbjct: 297 GFTAKSPRWAIAYKFPAEEVITVLKDIELSVGRTGAVTPTAILEPVRVAGTTVQRASLHN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED I+            +DIR+GD V+VK+AG++IP+VV  +   R  + + F  PS CP
Sbjct: 357 EDLIR-----------EKDIRIGDHVIVKKAGDIIPEVVSSLKERRTGEEKEFFMPSHCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S ++R  +        A RC     C A   E L HFVSR A NI+GLG++ +   F
Sbjct: 406 ECDSELIRIEDE------VALRCMNP-KCPALIRESLIHFVSRTAMNIDGLGEKVISQLF 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K E     I+  ADI+ L + Q  +  +I      G+ S  NL  +I+  R  SLE+ +F
Sbjct: 459 KEE----LIQDVADIYFLTQEQLIALERI------GEKSALNLIQAIDASRENSLEKLLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRHVGA+ A++L          AQE + +    N     LIR+  +GD +A +IV++
Sbjct: 509 GLGIRHVGAKAAKTL----------AQEFDTLTNLQNASKEELIRIDEIGDKMADSIVQY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQEYV 670
           +  P     +  L K       +  K ++ E        K +V TG L  + R++A+E +
Sbjct: 559 FSMPEVHELIAELQKAEVNMQYKGPKKIAVEAGETSFAGKVVVLTGKLSILTRNEAKEKI 618

Query: 671 TQLGAVVSAILSRK 684
             LG  V+  +S+K
Sbjct: 619 ELLGGKVTGSVSKK 632


>gi|7674018|sp|Q9ZFY8|DNLJ_THESK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4235370|gb|AAD13188.1| NAD-dependent DNA ligase [Thermus sp. AK16D]
          Length = 674

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 244/713 (34%), Positives = 398/713 (55%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+AR+ ++ L   I YH+  YY    P I D+EYD L R    +   FP+L   + P
Sbjct: 1   MTLEEARRRVNELRDLIRYHNYLYYVLDAPEISDAEYDRLLRELKELEERFPEL---KSP 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G     + F+ V H     SL+  ++++++R F  RI R   +K      +T+
Sbjct: 58  DSPTEQVGARPLEATFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK--GPFLYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  IPTIPR L+  +P+ +EVRGE
Sbjct: 116 ERKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIPTIPRRLT-GVPDRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247
           VY+    FL LN E+   G + + NPRNAA+G LR+ +P    R      F+  GLG   
Sbjct: 175 VYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATFYALGLG-LE 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E   K Q+++L  +R  GFPV +G  +A    G+   Y      R  LP++ DG+V K+D
Sbjct: 234 ETGLKSQHDLLLWLRERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEADGVVVKLD 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +L ++LG  AR+PR+ +++KF  ++  TRLL +  Q+GRTG +TPV  LEPV I G+ 
Sbjct: 294 DLALWRELGYTARTPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLEPVFIEGSE 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  TLHNE +I+ L           D+R+GD VLV +AG VIP+V+ ++   R  + +P
Sbjct: 354 VSRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKERRTGEEKP 402

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             +P  CP C   ++     K GK+   HRC   L C A++ E ++H+ SR A +I+GLG
Sbjct: 403 IIWPENCPECGHALI-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIQGLG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++   +       +R  AD++ L++        + N+   G+ S  NL   I + + 
Sbjct: 454 EKLIEKLLEK----GLVRDVADLYRLKKED------LVNLERMGEKSAENLLRQIEESKG 503

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             LER +++LG+  VG  +AR+LA  +         ++ ++    +D   L+ V  VG++
Sbjct: 504 RGLERLLYALGLPGVGEVLARNLALRF-------GHMDRLLEAGLED---LLEVEGVGEL 553

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            A+AI+   ++P     V   LKE    +   E+   + ++    V TG L +  R + +
Sbjct: 554 TARAILNTLKDPEFRDLVRR-LKEAGVEMEAKEREGEA-LKGLTFVITGELSR-PREEVK 610

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  ++EE+   L+++
Sbjct: 611 ALLRRLGAKVTDSVSRKTSFLVVGENPGSKLEKARALGVPTLSEEELYRLIEE 663


>gi|319943831|ref|ZP_08018112.1| DNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319743064|gb|EFV95470.1| DNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 779

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/585 (38%), Positives = 328/585 (56%), Gaps = 45/585 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R  + +L  E+  H+  YY+   P + DS YD L      +   +P L     P+ P  +
Sbjct: 24  RARVQTLRAELLAHNRAYYEEDAPTVEDSVYDGLFLELQQLEARWPALL---TPDSPTQR 80

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +     VTH +P  SL   ++  D+  F  R+       +D    F+  PK+DG 
Sbjct: 81  VGSAPSAGFGTVTHRVPMRSLSNAFSEADVLAFDRRLKSLLGVTED--FAFSATPKLDGL 138

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
             T+RYE G+ V  A RGDG +GE+++A +R +  +P  LS   PE++EVRGEV + K D
Sbjct: 139 AATLRYEHGRLVQGATRGDGVTGENITANLRTVRGVPAQLSGPAPEVLEVRGEVLMLKED 198

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI--FAKGQ 254
           FLALN    A G K +ANPRNAA+G LR+L+     +R L F+ +G+G+ S+       Q
Sbjct: 199 FLALNRAQEARGDKLFANPRNAAAGSLRQLDARVTASRPLTFYAYGIGEVSDPDQVPASQ 258

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           + ML  +  LGF    G  +      ++ YY    S+R+TLPY IDG+VY++D+  LQ+Q
Sbjct: 259 HGMLVWLGTLGFLPPPGAERVQGVSALLDYYRHTGSVRATLPYAIDGVVYQLDDRHLQEQ 318

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
            G  AR+PR+ ++HK+A ++A T L DI +Q+GRTG+LTPVARLEPV +GG  ++NATLH
Sbjct: 319 AGFVARAPRFALAHKYAAEEAVTTLQDIFVQVGRTGVLTPVARLEPVFVGGVNVSNATLH 378

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            + + +GDRV+V+RAG+VIP+VV +++++R  DA+ F  PS C
Sbjct: 379 NEDEVR-----------RKHLLIGDRVIVRRAGDVIPEVVGVVLDQRPADAREFRMPSQC 427

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V R   P      A  RC GGL CSAQ+   L HF  R A +I+GLG    D  
Sbjct: 428 PVCGSAVQR--LPSE----ANWRCVGGLFCSAQRKRALWHFAHRRAMDIDGLG----DVL 477

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +  PAD++ L          ++ +   G+ S  NL  +I+  R+ SLERF+
Sbjct: 478 VEQLVDGNLVHEPADLYRLD------AATLQALPRMGEKSAANLLAAIDGSRHPSLERFL 531

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           F+LGIR VG E AR LA+ +   + F             DW +L+
Sbjct: 532 FALGIRAVGEEAARVLARAFGDLEGFLAA----------DWATLL 566



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 40/67 (59%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            + +V TGTL+ + R +A+  +  LG   +  +S +T  ++ G+N GSKL KA+ LG+ +
Sbjct: 708 GQSIVVTGTLEHLSRDQAEAMIRALGGKPAGSVSGRTAFVVAGENAGSKLTKARSLGISV 767

Query: 709 MNEEQFL 715
           + E  F 
Sbjct: 768 LAEADFF 774


>gi|120602570|ref|YP_966970.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
 gi|166215379|sp|A1VDM7|DNLJ2_DESVV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|120562799|gb|ABM28543.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
          Length = 797

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/719 (33%), Positives = 386/719 (53%), Gaps = 58/719 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+AR+  + L  ++  H+  YY+   P I D+EYD L R    +   +P L    D   P
Sbjct: 37  EEARQRAAQLRADLERHNRLYYELDTPEISDAEYDVLYRELVGLERRWPAL---RDEASP 93

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE+   L K  H++   SL+  ++ ++   F+ R+Y       D    F  +PK+
Sbjct: 94  TQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFMQRMY---NALPDAPSAFWCDPKM 150

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  + + YE G F  A  RG+G  GE V+A +R +  +P  L   ++P  IEVRGEV I
Sbjct: 151 DGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVVI 210

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           +K DF  LN    A G K +ANPRNAA+G +R+L+ T    R L F  +G+G+       
Sbjct: 211 AKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGGT 270

Query: 253 GQYE----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +     ++ ++R  GF      R   +   + +YY  + + R +L  +IDG+V K+D+
Sbjct: 271 APWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLDD 330

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+ LG  AR+PRW ++ KF   QA TRL DI +Q+GRTG+LTPVA LEPV +GG  +
Sbjct: 331 TEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVEV 390

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHNED I+            + + +GD VLV+RAG+VIP+VV  +V ER  D +PF
Sbjct: 391 SRATLHNEDEIR-----------AKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERPF 439

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C S VVR      G++  AHRC   + C A + + + HFVS+   ++ G+G+
Sbjct: 440 VFPENCPECDSPVVR----PQGEV--AHRCV-NVMCPAVRRQSIIHFVSKAGLDVRGVGE 492

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN-KRRN 547
           + +            +  P  +F+L +       + E +   G  S  N   +++  R  
Sbjct: 493 RWVQQLVDG----GHVTSPVGLFSLTK---LDLMRFERM---GPTSAANFVTALDAARTG 542

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L R I +LGIRHVG + AR+LA       NF     ++ A    D  +L ++P +G  
Sbjct: 543 ATLVRLICALGIRHVGEQTARTLAA------NF----TDLDALREADAETLQQLPDIGPE 592

Query: 608 IAQAIVEFYQNPRNICAVEALL-------KEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +A +I  F+ N  N+  +E L        ++ +P        +   ++  K++FTG+L +
Sbjct: 593 VAGSIRTFFANEGNLELLERLRAIGLWPKRQDAPPAPEGADAIVRPLQGLKVLFTGSLTR 652

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A++     GA +++ +++  D+++VG  PGSKLEKA++LG+++M E  F  +L+
Sbjct: 653 VGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAMLE 711


>gi|332686164|ref|YP_004455938.1| DNA ligase [Melissococcus plutonius ATCC 35311]
 gi|332370173|dbj|BAK21129.1| DNA ligase [Melissococcus plutonius ATCC 35311]
          Length = 678

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 248/724 (34%), Positives = 397/724 (54%), Gaps = 62/724 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++ +A      L+++++ +   YY   KP + D  YD L +    I  A+PDL  S+ P
Sbjct: 7   LTLTEATDRADELKEQLNQYSYEYYVQDKPSVEDYVYDRLYKELSEIETAYPDLITSDSP 66

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++GG++     KV H     SL   ++ ED+  F  RI+R      D    +  E
Sbjct: 67  T---QRVGGKILPGFEKVHHDSTMYSLNDGFSKEDIYNFDERIHRL----TDQPFTYCCE 119

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RY+ G+ V  A RGDG  GE+++  ++ + +IP  L LN    IEVRGE 
Sbjct: 120 LKIDGLAISLRYKNGELVLGATRGDGTIGENITENLKTVRSIP--LRLNKSISIEVRGEC 177

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F+ LN E    G   +ANPRNAA+G LR+L+ + IT  R LN F++ +     +
Sbjct: 178 YMPKTSFVRLNQEREEEGCDIFANPRNAAAGSLRQLD-SRITAKRNLNTFLYTVADFGSM 236

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK Q++ L ++  +G   N   R   T   + S+  E    R+ LPY+IDG+V KV+EF
Sbjct: 237 TAKNQFDALNELTTIGIRTNPEKRLCQTIDEVWSFIEEYHEKRNELPYEIDGIVIKVNEF 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S Q +LG   ++PRW I++KF  ++A T + +I+  +GRTG++TP A ++PV I G  ++
Sbjct: 297 SEQNKLGFTVKAPRWAIAYKFPPEEARTTVNEIEWTVGRTGVVTPTAIMDPVRIAGTTVS 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D+I+            +DIR+ D V++ +AG++IP+V   +V  R  ++ P+ 
Sbjct: 357 RASLHNFDFIQ-----------MKDIRLKDEVIIYKAGDIIPEVAKALVETRTNESVPYQ 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            PS CP+CQS +V  L+ +      A RC     C AQ  E L HFVSR+A NI GLG +
Sbjct: 406 APSHCPVCQSELVH-LDEE-----VALRCINP-KCPAQIKEGLNHFVSRNAMNIAGLGPR 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L   ++ +     ++  AD++ +   Q  +  KI+      + S  N+Y +I   +N S
Sbjct: 459 ILAQLYEKK----LVKDVADLYFVTEEQLMTLEKIK------EKSANNIYQAIAASKNNS 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E  IF LGIRHVGA+ A+ LA+++   +  +Q           +  S++ +  +G+IIA
Sbjct: 509 VEHLIFGLGIRHVGAKAAKILAEHFGDLKTLSQA----------NQESIMVLDSIGEIIA 558

Query: 610 QAIVEFYQNPRNICAVEALLKEVSP-------SIGRHEK-NVSSEIENKKLVFTGTLQKI 661
           +++V +++       V+ LL E+         +  R E+ N  S  +NK +V TG L   
Sbjct: 559 ESVVAYFEK----IEVQELLVELEKAGINFKYTGTRPEQLNGDSFFKNKTVVLTGKLTNY 614

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+E +  LG  V+  +S+KTDI+I G+  GSKL  A++L V + +E Q    L+ +
Sbjct: 615 TREEAKEQIESLGGNVTNSVSKKTDIVIAGEASGSKLAAAKELEVTVWDENQLTEALENH 674

Query: 722 NTTL 725
           + T+
Sbjct: 675 HPTV 678


>gi|195938757|ref|ZP_03084139.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 556

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/593 (37%), Positives = 355/593 (59%), Gaps = 47/593 (7%)

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 1   MDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 60

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 61  LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 120

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  
Sbjct: 121 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 179

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++
Sbjct: 180 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 239

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   
Sbjct: 240 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 288

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP++CP+C S V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 289 FPTYCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 342

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 343 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 392

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +  A E  +I          L +VP VG ++A
Sbjct: 393 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 442

Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +  F+    N   +  LL E     +P +   E+ + S    K +V TG+L ++ R  
Sbjct: 443 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 501

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 502 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 554


>gi|167038089|ref|YP_001665667.1| NAD-dependent DNA ligase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116496|ref|YP_004186655.1| NAD-dependent DNA ligase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|254781439|sp|B0KBN6|DNLJ_THEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166856923|gb|ABY95331.1| DNA ligase, NAD-dependent [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929587|gb|ADV80272.1| DNA ligase, NAD-dependent [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 662

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 247/707 (34%), Positives = 398/707 (56%), Gaps = 51/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+L   + P+ P  +
Sbjct: 4   KERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEL---KTPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +LR F  R+     ++    + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRV-----REAVGDVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YEKG F   + RGDG  GE+V+  ++ I +IP  L  ++  +  VRGEV++ +  
Sbjct: 116 SVELIYEKGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVSLV--VRGEVFMPRAS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L K      K   E
Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +   GF +    ++ +    ++    E++++R  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLEFLNEQGFKIIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V+V++AGE+IP+VV+++  ER    + F  P  CP 
Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR L        A  RCT GL C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVRLLGE------AIRRCT-GLNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLL- 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           S+    +I   AD++ L+        ++      GD SV NL ++I + +   L+R +F 
Sbjct: 455 SKGLIHNI---ADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++       + ++NI+    +D+  L   P +G  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHF-------KTMDNIMKAKFEDFTQL---PDIGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
              +N+  +E  LK    ++ +  K  V++  E K  V TG L    R +A   + + G 
Sbjct: 556 AEKQNVEIIEK-LKNAGVNMKKIPKEKVNNIFEGKTFVLTGALGNYTREEATRIIEERGG 614

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            V+  +S+KTD ++VG +PGSKL+KAQ+LG+KI++E+QF  +L+  N
Sbjct: 615 KVTNSVSKKTDYVLVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGEN 661


>gi|326390897|ref|ZP_08212448.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200]
 gi|325993045|gb|EGD51486.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200]
          Length = 662

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 248/707 (35%), Positives = 399/707 (56%), Gaps = 51/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+    + P+ P  +
Sbjct: 4   KERVKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---KTPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +LR F  R+     ++    + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRV-----REAVGDVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G F   + RGDG  GE+V+  ++ I +IP  L  ++  +  VRGEV++ +  
Sbjct: 116 SVELIYENGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVSLV--VRGEVFMPRTS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L K      K   E
Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++  GF V    ++ +    ++    E++++R  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLEFLKEQGFKVIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V+V++AGE+IP+VV+++  ER    + F  P  CP 
Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR      G+  A  RCT GL C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVR----LPGE--AIRRCT-GLNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLL- 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           S+    +I   AD++ L+        ++      GD SV NL ++I + +   L+R +F 
Sbjct: 455 SKGLIHNI---ADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++       + ++NI+    +D+  L   P +G  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHF-------KTMDNIMKAKFEDFTHL---PDIGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
              +N+  +E  LK    ++ +  K  VS+  E K  V TG L+   R +A   + + G 
Sbjct: 556 AEKQNVEIIEK-LKNAGVNMKKLSKGKVSNIFEGKTFVLTGALENYTREEATRMIEERGG 614

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            V+  +S+KTD I+VG +PGSKL+KAQ+LG+KI++E+QF  +L+  N
Sbjct: 615 KVTNSVSKKTDYILVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGEN 661


>gi|326334401|ref|ZP_08200613.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325693368|gb|EGD35295.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 670

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/703 (32%), Positives = 378/703 (53%), Gaps = 54/703 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++ +L  E++ H+  YY    P I D E+D   +    + H +P   + +DPN P  ++
Sbjct: 7   QQIETLRTELNEHNYNYYVLDSPTISDYEFDQKLKHLQELEHQYP---QYKDPNSPTVRV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+  +   + H     SL+  ++ E+L+++  R+ +   K   + I F  E K DG  
Sbjct: 64  GGEITKNFPTIVHEFRMYSLDNSYSKEELKEWEKRVLKLLGK---DKISFVCELKYDGAS 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + Y+ GK V A  RGDG  G++++A +R I ++P  L  + PE   +RGE+ I K  F
Sbjct: 121 IDLTYDAGKLVQAVTRGDGIQGDEITANVRTIRSVPLTLKGDYPEYFHIRGEIIILKEGF 180

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254
             +N++ IA G  PY NPRN ASG L+  + T++ +     L ++V G    + +  + Q
Sbjct: 181 KRMNEQRIAEGEDPYMNPRNTASGSLKLQDTTEVAKRPLDCLLYYVVG----NNLPIQTQ 236

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L+K R  GF V    +  ++   ++ + N   + R  LPY+ DG+V KV++F  Q++
Sbjct: 237 FEGLRKAREWGFKVPTQSKLCHSTQEVMDFINYWDTHRHDLPYETDGVVIKVNDFQAQQE 296

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW I++KF  ++ +T L  I  Q+GRTG +TPVA L PV + G ++  A+LH
Sbjct: 297 LGYTSKSPRWAIAYKFKAEEVTTTLESISYQVGRTGAITPVANLTPVLLAGTIVKRASLH 356

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L           D+ +GD+V V++ GE+IPK+  +  +ER  +A   +F + C
Sbjct: 357 NADQIAKL-----------DLHLGDQVFVEKGGEIIPKITGVKTDERKANATTVTFITHC 405

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +VR+         A H C     C  Q   R++H++SR A +IEGLG + ++  
Sbjct: 406 PECGTALVRNEGE------AQHYCPNAYGCPPQITGRIQHYISRKAMDIEGLGSETVELM 459

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+    A  I   AD++ L+  Q      I+N+   G+ S  N+ + I K + I  +R +
Sbjct: 460 FR----AGLIHNYADLYELKVEQ------IQNLERMGERSAKNIIEGIEKSKEIPFDRVL 509

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+  A+ Y + + F           +  +  L ++  +GD IAQ+++E
Sbjct: 510 FALGIRMVGETVAKKFARIYKTLEAF----------RSATYEQLTQIDEIGDRIAQSVIE 559

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F+ + RN   +E L         +   N  +S  ++ K LV +G   +  R + +  +  
Sbjct: 560 FFADDRNKVILERLQSYGVQFALKETANFPLSDILKGKTLVVSGVFARYSRDELKALIEN 619

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
            G  V + +S KT  ++ G+N G SKLEKA QLG+ I++E++F
Sbjct: 620 HGGKVGSSISSKTSYVVAGENMGPSKLEKATQLGIPILSEKEF 662


>gi|303231514|ref|ZP_07318244.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6]
 gi|302513857|gb|EFL55869.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6]
          Length = 666

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/703 (32%), Positives = 385/703 (54%), Gaps = 46/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L++E+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G + +    KV H  P LSL  +++ +++R F  R+ +    +   +  + +E KIDG 
Sbjct: 61  VGIKADGPFEKVVHGRPMLSLSNVFSADEVRAFDQRVTKELGHQ---TKAYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IE+RGE Y+  ++
Sbjct: 118 AVNLHYENGIFVRAVTRGDGKVGEDVTANVRTIKSIPLYLE-NAPEFIEIRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G  S      Q E
Sbjct: 177 FKRINEERDEEGVPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSESGANIHTQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L  +    F VN   R  NT   ++   N     R  LPYD DG+V KV++F+ Q+ LG
Sbjct: 237 LLHTLENFHFSVNPHYRVCNTIDEVIEAINYWGEKRHELPYDTDGMVIKVNDFNDQEMLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T + DI I +GRTG+LTP   LEPV + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETVVKDITINVGRTGVLTPTGELEPVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD VL+ +A E+IP+V+ ++  +R     PF+ P+ CP+
Sbjct: 357 DFIT-----------EKDIRIGDHVLIHKAAEIIPEVIRVLPEKRTGSEVPFTIPNRCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR    + G+  AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVR----REGE--AAIRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I    D++ L      +T  I  +   G  S  NL  +I   ++  L+R +F 
Sbjct: 459 EK----LITNVVDLYHL------TTESIMGMDRMGKKSADNLVKAIADSKSRGLDRVLFG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A       N  + ++  +  + D+   L+ V  +G  +A +I+E+ 
Sbjct: 509 LGIRLIGSKAAGTIA-------NVVKSMDRFLTISKDE---LVAVEEIGPTMADSIIEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           ++P++I  + +L++         ++   +E+E + +V TG L+ + R +A + + + GA 
Sbjct: 559 EDPQHIKIINSLIEAGLKMDVDVQEAAGNEMEGEIVVLTGKLEVMGRSEAGKLLEKHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL+
Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVINEEEFIELLK 661


>gi|56962859|ref|YP_174586.1| NAD-dependent DNA ligase LigA [Bacillus clausii KSM-K16]
 gi|81366743|sp|Q5WJ30|DNLJ_BACSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56909098|dbj|BAD63625.1| DNA ligase [Bacillus clausii KSM-K16]
          Length = 671

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/709 (33%), Positives = 379/709 (53%), Gaps = 80/709 (11%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
           YH   YY    P + DSEYD L      +   +PDL   + P+    +IGG    S  KV
Sbjct: 22  YH---YYVLDTPKVPDSEYDRLMNELLQLEADYPDLVTEDSPS---VRIGGPPAPSFKKV 75

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H +P +SL   +N EDLR F  R+    ++     + +  E K DG  +++ YE GK V
Sbjct: 76  AHRVPMMSLSNAFNEEDLRAFDRRV----RQAVGEHVSYVCELKFDGLAVSLTYENGKLV 131

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
             A RGDG  GED++  +R +P IP  L L  P  IEVRGE Y+ K  F  LN+     G
Sbjct: 132 RGATRGDGTIGEDITNNLRTVPAIP--LRLKQPYSIEVRGEAYMPKASFERLNEAKEQAG 189

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
            + +ANPRNAA+G LR+L+P     R L+ F + +G+      +  ++ L  ++ LGF V
Sbjct: 190 EEKFANPRNAAAGSLRQLDPKIAAKRNLSLFAYSIGEVEGKNVQTHFDSLMFLKELGFKV 249

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
           N    +  T   +++Y  +    R  LPY+IDG+V KV+  +  ++LG  A+SPRW  + 
Sbjct: 250 NEEAAECETIEDVIAYTEKWSERRHELPYEIDGVVVKVNSLADHEKLGFTAKSPRWATAF 309

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           KF  ++  T L DI++ +GRTG++TP A L+PV + G  +  A+LHNED I+        
Sbjct: 310 KFPAEEVLTVLRDIELNVGRTGVVTPTALLDPVLVAGTTVRRASLHNEDLIR-------- 361

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV------- 441
               +D+++GD V+VK+AG++IP+VV ++ ++R  +   F  P+ CP C S +       
Sbjct: 362 ---EKDVKLGDTVIVKKAGDIIPEVVGVLTDKRTGEEVDFHMPTECPECHSVLERLEGEV 418

Query: 442 -VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
            +R LNPK               C AQ  E L HFVSR+A NI+GLG++ +   F  +  
Sbjct: 419 ALRCLNPK---------------CPAQIREGLIHFVSRNAMNIDGLGEKVISQLFLHQ-- 461

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
                + AD+  L   ++    ++E +   G+ SV NL  +I   +  SLER +F LGIR
Sbjct: 462 -----LIADVADLYLLEREELLQLERM---GEKSVDNLLAAIEASKENSLERLLFGLGIR 513

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
            VGA+ A++LA  + + +   +            +  L+ V  +G+ +A +IV ++Q P 
Sbjct: 514 FVGAKAAKTLAYEFETMERLQEAT----------FEQLLAVNEIGEKMADSIVSYFQKPE 563

Query: 621 NICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVT 671
               V  LL++++ +       G  +  ++ E      K +V TG L +  R +AQE + 
Sbjct: 564 ----VATLLEKLANAGVNMTYTGPKKAAIAEEAGVFAGKTVVLTGKLSQWTRKEAQEKIE 619

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LG  V+  +S+KTD+++ G++ GSK +KA+ +G++I  EEQF   ++Q
Sbjct: 620 ALGGTVTGSVSKKTDLVVAGEDAGSKQKKAESIGIEIWTEEQFTQAVEQ 668


>gi|227543584|ref|ZP_03973633.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A]
 gi|300909387|ref|ZP_07126848.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112]
 gi|227186424|gb|EEI66495.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A]
 gi|300893252|gb|EFK86611.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112]
          Length = 680

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 250/721 (34%), Positives = 393/721 (54%), Gaps = 56/721 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M ++Q  P++ L++++A+ E+  L  +++     YY+   P + D  YD   +R   +  
Sbjct: 1   MSQKQ-TPVKELTLQEAQDEIKPLRAKLTEWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L  ++ P     ++GG     L KV H IP LS+  +++IE+L  F  R     Q+
Sbjct: 60  QFPQLLSADSPT---QRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQR----QQE 112

Query: 121 KDDNSIF--FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
             D  +   + LE KIDG  +++ YE GK V  + RG+G  GEDV+A +R I ++P    
Sbjct: 113 NRDVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTANVRTIKSVP--AE 170

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLN 237
           L  P  IEVRGE Y+ K  F  LN +  A G   +ANPRNAA+G LR+L+P     R L+
Sbjct: 171 LPEPLSIEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELD 230

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F++ + +  ++  K Q E L +MR LGF VN   R  +    I  Y  E  + R  L Y
Sbjct: 231 TFIYYVPEYQKLGVKTQAEALDRMRELGFNVNLNNRVVHNREEIEKYIEEYTAQRDKLTY 290

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            IDG+V KV++   +  LG   + PRW I++KF  ++ +T + DI   +GRTG +TP A 
Sbjct: 291 GIDGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAV 350

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           ++PV + G  ++ A+LHN DY++            +DIR+GD V + +AG++IP++  + 
Sbjct: 351 MDPVQLAGTTVSRASLHNPDYLR-----------EKDIRIGDTVYLHKAGDIIPEISKVD 399

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R  D+  +  P+ CP+C S +V       G++  A RC   + C AQ  E L HF S
Sbjct: 400 LTKRPADSVEYEIPTKCPVCSSELVH----LDGEV--ALRCINPM-CPAQIKEGLAHFAS 452

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R+A NI+GLG + ++  +  E     I   A ++ L   Q  +  K      FG+ S  N
Sbjct: 453 RNAMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLTLDK------FGEKSTAN 502

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  SI+  RN S+ER +F LGIRHVGA+ AR + +++    +  +         NDD +S
Sbjct: 503 LLTSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFGDLDSLMKA--------NDDEIS 554

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLV 653
            I    +G  I ++IV ++ N + +  ++  L+EV  +      R   N  SE   +++V
Sbjct: 555 AISG--IGPTIGESIVTYFANQQVVKLIDE-LREVGVNFAYLGSRSNANPDSEWNGRRVV 611

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG L ++ R +A+ ++   GA V+  +S+KTDI+I G + GSKL KAQ LG+ + NE+Q
Sbjct: 612 LTGKLTEMTRGEAKLWLENHGAKVTGSVSKKTDIVIAGADAGSKLTKAQDLGIDVWNEQQ 671

Query: 714 F 714
           F
Sbjct: 672 F 672


>gi|325274411|ref|ZP_08140498.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51]
 gi|324100446|gb|EGB98205.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51]
          Length = 776

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/621 (35%), Positives = 342/621 (55%), Gaps = 44/621 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAALSAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             +++ Y  G  V  A RGDG +GED+SA +R +  IP ++     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGLLVQGATRGDGTTGEDISANVRTVRNIPLKLHGEGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ S       
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSASIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  ++ A      + YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLDYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P + PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPDDARPVAVPSEC 406

Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+      V R    +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++      D    I  PAD++ LQ  Q      +  + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLV---DEGL-IGSPADLYKLQFEQ------VVGLEGFAEVSTRKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALL 629
           A  I  F+++  N   ++ LL
Sbjct: 567 AYEIHNFFEDEHNQKVIQQLL 587



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + SL   I  L I  VG   A  L     S       ++ IIA +  D    +R  L   
Sbjct: 606 STSLAGMIAKLDIASVGPTGAEKLVAKLDS-------LDKIIAADGID----LRQALAAK 654

Query: 607 IIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRH---EKNVSS--EIENKKLVFTGTL 658
             A A+ EF+++  N     A+EA L     + G H   EK V+    +  +  V TGTL
Sbjct: 655 Q-ADAVREFFKDEANQQLARAIEAQLL----AFGMHWTSEKKVAEGLPLAGQTWVLTGTL 709

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A++ +  LGA V+  +S +T  ++ G   GSKL KA +LGVK+++EE F+  L
Sbjct: 710 ERMSRDVAKDKLESLGAKVAGSVSGRTQCVVAGPGAGSKLAKASELGVKVLDEEAFVAFL 769

Query: 719 QQYNTTL 725
                T+
Sbjct: 770 AGQGITI 776


>gi|126661836|ref|ZP_01732835.1| DNA ligase [Flavobacteria bacterium BAL38]
 gi|126625215|gb|EAZ95904.1| DNA ligase [Flavobacteria bacterium BAL38]
          Length = 663

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 240/701 (34%), Positives = 374/701 (53%), Gaps = 57/701 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           + +L +E++ H+  YY    PII D E+D   ++   +    PD     D N P  ++GG
Sbjct: 7   IKNLREELNQHNYNYYVLDNPIISDFEFDQKLKQLQDLEIQNPDFF---DENSPTQRVGG 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +  +   + H     SL+  ++IEDL+ + TRI +      D  + +T E K DG  I+
Sbjct: 64  MVTKNFETIKHEYRMYSLDNSYSIEDLQDWETRIQKVL---GDVPLEYTCELKYDGASIS 120

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           I YE G+ V A  RGDG  G+DV+  I+ I  +P  L  + PE  ++RGE+ +    F  
Sbjct: 121 ISYENGRLVRAVTRGDGVQGDDVTNNIKTIKAVPIHLKGDFPEKFDIRGEIILPFAGFEK 180

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQYE 256
           +N E+I +G  PY+NPRN ASG L+  +  ++ +     L +FV G    + +  K Q+E
Sbjct: 181 MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYFVIG----NNLPFKTQFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQK R  GF V N  + A   + +  + N     R  LPY+ DG+V KV+    Q++LG
Sbjct: 237 GLQKARDWGFKVPNQSKLAKNLNEVFEFINYWDKHRHDLPYETDGVVIKVNNIQHQEELG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW +++KF  +Q +T+L  I  Q+GRTG +TPVA LEPV + G ++  A+LHN 
Sbjct: 297 YTAKSPRWAMAYKFKAEQVTTQLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+GD V V++ GE+IPK+  I V +R   A+P  + + CP 
Sbjct: 357 DQIEKL-----------DIRIGDDVFVEKGGEIIPKI--IAVAKRGNQAEPTKYITHCPE 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQ+ +VR          A H C     C  Q + R++HF++R A +I+GLG + +   F 
Sbjct: 404 CQTELVRSEGE------ANHFCPNFYGCPPQIIGRIQHFITRKAMDIDGLGGETVALLFN 457

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   AD++ L++ Q     ++       + S  NL + I K + I  ER +++
Sbjct: 458 ----AGLVTNYADLYELKKEQIVPLERM------AEKSAENLINGIEKSKTIPFERVLYA 507

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LAK+Y S    A          N   + LI V  +GD IAQ++++F+
Sbjct: 508 LGIRYVGETVAKKLAKHYKSIDAIA----------NASVMDLILVDEIGDKIAQSVMQFF 557

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            N  NI  ++  LK     +    ++  VS +++ K  V +G  +   R + ++ +   G
Sbjct: 558 DNQENIRIIDK-LKSFGVQLESDVEDVLVSEKLKGKTFVVSGVFEIYSRDELKKSIEDNG 616

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
             V + +S KTD +I GDN G SKLEKA QL + I++E  F
Sbjct: 617 GKVGSSISSKTDFVIAGDNMGPSKLEKANQLKIAIISEIDF 657


>gi|259502571|ref|ZP_05745473.1| DNA ligase [Lactobacillus antri DSM 16041]
 gi|259169461|gb|EEW53956.1| DNA ligase [Lactobacillus antri DSM 16041]
          Length = 678

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 238/713 (33%), Positives = 386/713 (54%), Gaps = 54/713 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L++  A++E++ L Q+++     YY+   P + D  YD   +R   +   FP+L  
Sbjct: 6   PVDQLTLAAAKQEIAPLRQQLTKWGREYYEQDNPSVEDYVYDRAYQRLVELEQRFPELKT 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S+ P      +GG     L KVTH IP LS+  +++I++L  F  R     Q  DD ++ 
Sbjct: 66  SDSPT---QHVGGGPTGELTKVTHEIPMLSMGDVFSIDELMDFNQR----QQDNDDVNVT 118

Query: 128 --FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
             + LE KIDG  +++ YE G+ V  + RG+G+ GEDV+A +  I ++P    L  P  +
Sbjct: 119 PEYNLELKIDGLSLSLVYENGRLVQGSTRGNGNIGEDVTANVMTIKSVPH--QLPEPLSL 176

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLG 244
           E RGE Y+ K  F+ LN E  A G   +ANPRNAA+G LR+L+P    R  L  F++ + 
Sbjct: 177 EFRGECYMPKESFVKLNQEREAAGLPIFANPRNAAAGSLRQLDPQVTARRDLATFMYYVP 236

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +  ++  + Q   L +MR LGF VN   R   +   I  Y  E  + R  L Y IDG+V 
Sbjct: 237 EYQKLGVRTQAAALNRMRELGFSVNPHNRVVRSRQEITDYIEEYTAQRDQLSYGIDGIVE 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++   +  LG   + PRW I++KF  ++ +T + +I   +GRTG +TP A ++P+ + 
Sbjct: 297 KVNDLDTENALGNTVKVPRWEIAYKFPPEEQATVVREIVWTVGRTGNVTPTAVMDPIQLA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+LHN DY++            +DIR+GD V + +AG++IP++  + + +R  D
Sbjct: 357 GTTVSRASLHNPDYLR-----------EKDIRLGDTVYLHKAGDIIPEISRVDLKKRPAD 405

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           +QP+  P+ CP+C S    DL    G++  A RC   + C AQ  E L HF SR+A NI+
Sbjct: 406 SQPYQVPTTCPVCGS----DLVHLDGEV--ALRCVNPM-CPAQIKEGLAHFASRNAMNID 458

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + +   +  +     +   AD+++L   Q  +  K      FGD S TNL  SI  
Sbjct: 459 GLGPKIIQQLWDKQ----LVHDVADLYSLTHDQLLTLDK------FGDKSATNLLTSIAN 508

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            RN S+ER +F LGIRHVGA+ AR + +++ + +         +A  +           +
Sbjct: 509 SRNNSVERLLFGLGIRHVGAKAARLIMEHFQTLERLMAANAEEVAAVDG----------I 558

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKI 661
           G  I +++  ++ N + +  V+  L+    +   H  +    +SE   +++V TG L+++
Sbjct: 559 GPTIGESVQTYFANEQVVTLVDE-LRAAGVNFDYHGASAPVAASEWNGRRVVLTGKLEEL 617

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            R  A+ ++   GA V+  +S+KTDI+I G   GSKL KAQ LG+ + +E +F
Sbjct: 618 TRTDAKNWLEAHGAKVTGSVSKKTDIVIAGTAAGSKLTKAQDLGITVWDEARF 670


>gi|7674019|sp|Q9ZHI0|DNLJ_THEFI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]; AltName: Full=Tfi DNA ligase
          Length = 670

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 253/718 (35%), Positives = 398/718 (55%), Gaps = 64/718 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+AR+ ++ L   I YH+  YY  + P I D+EYD L R    +   FP+    + P
Sbjct: 1   MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEF---KSP 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G       F+ V H     SL+  +  E++  F  R+ R   +K      +T+
Sbjct: 58  DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALGRK--RPFLYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG  GE+V+  +  IPTIPR L   +P+ +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLK-GVPDRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P    +      F+  GLG   
Sbjct: 175 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLG-LE 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E   K QYE+L  ++  GFPV +G  +A    G+   Y    + R  LP++ DG+V K+D
Sbjct: 234 ESGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPFEADGVVVKLD 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +L ++LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV I G+ 
Sbjct: 294 DLALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSE 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  + +P
Sbjct: 354 VSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERP 402

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             +P  CP C  R+V     K GK+   HRC   L C A++ E ++H+ SR A +IEGLG
Sbjct: 403 IRWPETCPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIEGLG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINK 544
           ++ ++   +       +R  AD++ L++         E++LG    G+ S  NL   I +
Sbjct: 454 EKLIERLLEK----GLVRDVADLYHLRK---------EDLLGLERMGEKSAQNLLRQIEE 500

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++  LER +++LG+  VG  +AR+LA+ + +     +     +    +          V
Sbjct: 501 SKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELLEVEE----------V 550

Query: 605 GDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           G++ A+AI+E  ++P  R++      LKE   S+   E+ VS  +     V TG L +  
Sbjct: 551 GELTARAILETLKDPAFRDLV---RRLKEAGVSMESKEE-VSDLLSGLTFVLTGELSR-P 605

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R + +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV ++ EE+F   L++
Sbjct: 606 REEVKALLQRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKE 663


>gi|294791934|ref|ZP_06757082.1| DNA ligase, NAD-dependent [Veillonella sp. 6_1_27]
 gi|294457164|gb|EFG25526.1| DNA ligase, NAD-dependent [Veillonella sp. 6_1_27]
          Length = 667

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 373/704 (52%), Gaps = 46/704 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  +++ +++R F +R+ +    K      + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFASRVEKELGHKPSA---YVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  + PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYLE-DAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEVGANIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +LQ +    F VN   R   T   ++   N     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLQSLETFKFSVNPHYRVCKTIDEVIDAINYWGEKRHELPYDTDGMVIKVNSFEDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R     PF+ P+ CP+
Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR    + G+  AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPTVR----REGE--AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +  ++      G  S  NL  +I   +   L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAIADSKTRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F                 L+ V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAAGTIANVVKSMERFLTITKE----------ELVAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P ++  +E L            +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPAHVEIIEGLTAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL++
Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLRE 662


>gi|312870519|ref|ZP_07730638.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3]
 gi|311093981|gb|EFQ52306.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3]
          Length = 679

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/714 (34%), Positives = 385/714 (53%), Gaps = 55/714 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L++  A++E++ L +++      YY+   P + D  YD   +R   +   FP+L  
Sbjct: 6   PVDQLTLAAAKQEIAPLREQLIKWGQEYYEQDNPSVEDYVYDRAYQRLVELEQRFPELKT 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S+ P      +GG     L KVTH IP LS+  +++I++L  F  R     Q   D S+ 
Sbjct: 66  SDSPT---QHVGGGPTSELTKVTHEIPMLSMGDVFSIDELMDFNQR----QQDNGDVSVT 118

Query: 128 --FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
             + LE KIDG  +++ YE G+ V  + RG+G+ GEDV+A +  I +IP    L  P  +
Sbjct: 119 PEYNLELKIDGLSLSLVYENGRLVQGSTRGNGNIGEDVTANVMTIKSIPH--QLPEPLSL 176

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLG 244
           E RGE Y+ K  F+ LN E  A G   +ANPRNAA+G LR+L+P    R  L  F++ + 
Sbjct: 177 EFRGECYMPKESFVKLNQEREAAGLSVFANPRNAAAGSLRQLDPQVTARRDLATFMYYVP 236

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +  ++  + Q   L +MR LGF VN   R  +    I  Y  E  + R  L Y IDG+V 
Sbjct: 237 EYQKLGVRTQAAALDRMRELGFSVNPHNRVVHNRQEITDYVEEYTAQRDQLSYGIDGIVE 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++   +  LG   + PRW I++KF  ++ +T + DI   +GRTG +TP A ++PV + 
Sbjct: 297 KVNDLDTENALGNTVKVPRWEIAYKFPPEEQATVVRDIVWTVGRTGNVTPTAVMDPVQLA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+LHN DY+             +DIR+GD V + +AG++IP++  + + +R  D
Sbjct: 357 GTTVSRASLHNPDYLS-----------EKDIRLGDTVYLHKAGDIIPEISRVDLKKRPAD 405

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           +QP+  P+ CP+C S +V  L+ +      A RC   + C AQ  E L HF SR+A NI+
Sbjct: 406 SQPYQVPTTCPVCGSDLVH-LDDEV-----ALRCVNPM-CPAQIKEGLAHFASRNAMNID 458

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + +   +  E     +   AD+++L   Q  +  K      FGD S  NL  SI  
Sbjct: 459 GLGPKIIQQLWDKE----LVHDVADLYSLTHDQLLTLDK------FGDKSAANLLTSIAN 508

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            RN S+ER +F LGIRHVGA+ AR + +++       Q ++ ++  + D+   +  V  +
Sbjct: 509 SRNNSVERLLFGLGIRHVGAKAARLIMEHF-------QSLDRLLTASADE---VAAVDGI 558

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQK 660
           G  I  ++  ++ N +    V+  L+ V  +   H   V     SE   +++V TG L++
Sbjct: 559 GPTIGDSVQTYFANEQVKKLVDE-LRAVGVNFDYHGSVVPAATDSEWNGRRVVLTGKLEE 617

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           + R  A+ ++   GA V+  +S+KTDI+I G   GSKL KAQ LG+ + +E +F
Sbjct: 618 LTRADAKHWLEAHGAKVTGSVSKKTDIVIAGTAAGSKLTKAQDLGITVWDEARF 671


>gi|325267489|ref|ZP_08134142.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
 gi|324981014|gb|EGC16673.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
          Length = 804

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 268/800 (33%), Positives = 403/800 (50%), Gaps = 133/800 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A ++   +  + +L Q ++ +   YY    P + D+EYD L R  + +   +P       
Sbjct: 22  ACTMSTPQHRIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELETLEAEYPQF---RL 78

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED-------LRKFITRIYRFWQKKDD 123
           P  P  ++GG +      V H++P LSL   ++  D         +F+    R  ++   
Sbjct: 79  PESPTQRVGGAVLDGFETVVHAVPMLSLNNAFSPRDDETGAFGHAEFLAFDERVCKELGV 138

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIP 182
             + +  EPK DG  +++ Y+ G  V AA RGDG +GE+V+  I+ +  IP ++     P
Sbjct: 139 AQVEYAAEPKFDGLAVSLLYQNGILVQAATRGDGTTGENVTENIKTVRNIPLKLHGEKQP 198

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFV 240
            ++EVRGEV + K DF ALN   +  G+KP+ANPRNAA+G LR+L+ + IT  R L+FF 
Sbjct: 199 ALLEVRGEVLMLKADFAALNQRQLEAGQKPFANPRNAAAGSLRQLD-SKITAQRKLHFFA 257

Query: 241 HGLGKTS--EIFAKGQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPY 297
           +G+ + S  E   +   E L  +  LGF +  G    +T    ++  Y  +   R  LPY
Sbjct: 258 YGIAQLSGVERLPESHMEELALLHELGFSLPEGYFGTHTGAAAVLREYERLAEHRPRLPY 317

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KV+  + Q+QLG  +R+PRW I+HKF  ++A T +  ID+Q+GRTG +TPVAR
Sbjct: 318 EIDGMVVKVNSLAEQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGAITPVAR 377

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L PV +GG  +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV ++
Sbjct: 378 LAPVFVGGVTVTNATLHNQD---------EVAR--KDVRVGDTVVVRRAGDVIPEVVRVL 426

Query: 418 VNERHP-------------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464
           + ER P               +PF  P  CP+C S V R+     G+ VA  RCTGG+ C
Sbjct: 427 L-ERRPMQPVDLLGEQMEAKYEPFRLPETCPVCGSAVERE----AGEAVA--RCTGGMLC 479

Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524
            AQ+ + L HF SR A +I GLG +Q++    ++     +   ADI+ L   Q  +   I
Sbjct: 480 QAQRAQGLIHFASRKAMDIAGLGDKQIEALVAAD----VLHSFADIYRLDIAQLQT---I 532

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-- 582
           ++          N+ DSI + R   L RF+F+LGIRHVG   A+ LA  + +     +  
Sbjct: 533 KDSKSAATKWAQNILDSIAQSRTPPLARFLFALGIRHVGESTAKQLAAAFGNLDTVRRAP 592

Query: 583 --------EINNIIAHN-------------NDDWLS----------------------LI 599
                   +I +I+AH               DD L                       L 
Sbjct: 593 EPILACLPDIGSIVAHAIAHYFKQPAQQKMLDDLLQHVAPQAAAPSPQTRAHAAPEQWLQ 652

Query: 600 RVP--------------LVGDIIA----QAIVEFYQNPRNICAVEALLKEVSP------- 634
           R+P              L G + A    QA+ + +Q+ R   A  ALL+E++        
Sbjct: 653 RLPNIKLSEKRAAELWQLAGSLHALQTDQALPQEWQDWRKQPAHAALLQEITAFTEALPE 712

Query: 635 ------SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
                 S   H ++  S I  K  V TGTL  ++R +A   +   G  VS  +S+KTD +
Sbjct: 713 SSTDGVSGSLHPEH--SPIAGKTFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFV 770

Query: 689 IVGDNPGSKLEKAQQLGVKI 708
           + G+  GSKLEKAQ LGV +
Sbjct: 771 VAGEAAGSKLEKAQALGVAV 790


>gi|317051097|ref|YP_004112213.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5]
 gi|316946181|gb|ADU65657.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5]
          Length = 660

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 248/705 (35%), Positives = 376/705 (53%), Gaps = 59/705 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+ +  L   +   D+ YY  + PI+ D EYD L R   A+   FP    ++ P     +
Sbjct: 6   RERIDQLTALLQKADEAYYTLADPIMGDGEYDGLYRELRALEARFPQYVHADSPT---RR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IG  +        HS+P LSL   +   +L  F+ ++ R       + + FT+EPKIDG 
Sbjct: 63  IGERLEGGSRAFVHSVPMLSLGNTYEQAELEDFLRKVRR----DSGDHVRFTVEPKIDGV 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVYISK 195
            +++ Y  G F  AA RGDG  GE++S  IR I ++P    L IP    +E+RGEVYI +
Sbjct: 119 AVSLHYRDGVFSVAATRGDGLQGEEISHNIRTIRSLP----LEIPAAGAMEIRGEVYIPR 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
             F  +N + +  G   YANPRN A+G L+ L+P   +R  L  F + L           
Sbjct: 175 QAFERINQQRLEQGESLYANPRNLAAGSLKLLDPAQSSRRGLQIFCYSLQGFPH---DSH 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++ LQ +R  GFPV++ VRQ  +   +      ++  R  LP+DIDG V KVD+  L ++
Sbjct: 232 FQCLQTLRDWGFPVSDLVRQCASDAEVWDAVQHIRQQRELLPFDIDGAVIKVDQLHLHEE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+ PR+ I++K+  +Q STRL DI  Q+GRTG++TPVA L+PV + G+ I+ ATLH
Sbjct: 292 LGTTAKIPRYAIAYKYEAQQVSTRLRDITFQVGRTGVITPVAELDPVLLAGSTISRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N + ++            +DIR+GD+VL+++ G+VIPKVV  I+  R  DA     P  C
Sbjct: 352 NFEELR-----------RKDIRIGDQVLIEKGGDVIPKVVKPIMALRSADASEVVPPENC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S +    N         H       C AQ+L  L HFVSRDA +I G+G++ +  F
Sbjct: 401 PECGSPLHWSDN-------GVHLYCQNPLCPAQRLGALLHFVSRDAMDIAGMGEKVVQRF 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
               D      IP DI+ L         ++ ++ GFG  S  NL  S+   +   LER +
Sbjct: 454 L---DEGILTDIP-DIYHL------VYERVASLDGFGVKSALNLQASVEASKAHPLERVL 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           F+LGIRHVG + A+ LA+++ S +   Q  I  + A           V  VG+I+A++I 
Sbjct: 504 FALGIRHVGKKTAQLLARHFGSMERLMQASIEELTA-----------VEEVGEIVARSIY 552

Query: 614 EFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F + P ++  VEAL +  ++         V+S +  + +VFTG L +  R + +E    
Sbjct: 553 SFLREPASVALVEALKRSGLNMESSAPRAQVASGLSGRSVVFTGKLSR-PRKEYEEMAQL 611

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            GA V + +S   D ++ G++ GSKL+KA++LGV I++EE+F+ L
Sbjct: 612 GGARVLSGVSGSLDYLVCGEDAGSKLDKARKLGVAIIDEEEFVRL 656


>gi|160902460|ref|YP_001568041.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95]
 gi|190359269|sp|A9BJX5|DNLJ_PETMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160360104|gb|ABX31718.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95]
          Length = 668

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 237/703 (33%), Positives = 389/703 (55%), Gaps = 53/703 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++    L+ EI  H+  YY  + PII D EYD L +    +   +P+L   + P+ P  +
Sbjct: 8   KERYEKLKAEIEEHNYRYYVLADPIISDQEYDKLFKELVELEKKYPEL---KTPDSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IGG +     KV H IP LSL+  +N E++  F  R+ +       N + +  E KIDG 
Sbjct: 65  IGGIVVEGFNKVNHLIPMLSLDNTYNEEEILDFHKRVLKNLSL---NHVEYFCELKIDGV 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + +RY  G    A  RGDG +GED++  ++ IP+IP  L  N+   IEVRGE+Y+ K +
Sbjct: 122 SVALRYTDGVLTQAITRGDGTTGEDITQNVKTIPSIPLRLRENL--TIEVRGEIYMPKKE 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F+ +N E    G   +ANPRNA +G L+ L+ T++  R L+ F++ +        + Q E
Sbjct: 180 FVRINSEREEKGLPVFANPRNATAGTLKLLDSTEVAKRKLSSFMYYVIFPQNYNLETQEE 239

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +  ++ +GF +N   + A     ++ ++ E    R  L Y++DG+V KV+ F LQ+ LG
Sbjct: 240 AINFLKEVGFRINPNYKNAQDIGQVIEFWKEWNRRRKELEYEVDGIVVKVNSFELQRLLG 299

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E ARSPRW I+ KF  +Q  T+L  I +Q+G TGI+TPVA  +P+ + G ++  A+LHN 
Sbjct: 300 ETARSPRWAIAFKFEAEQKETKLKAIKLQVGSTGIITPVAEFDPIQLEGTIVKRASLHNF 359

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DY+K            RDIR GD VL+++AG +IP+V+  +  +R  + +    P  CP+
Sbjct: 360 DYLK-----------ERDIREGDYVLIEKAGGIIPQVIGPVKEKRTGEEKIIRPPEKCPV 408

Query: 437 CQSRVVRDLNPKTGKLVAAH---RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           C  +V        GK+ ++    RC    +C  + L  L++FVSR+A NI+GLG + L  
Sbjct: 409 CGGKV--------GKIKSSEVAIRCLNP-SCPEKLLRTLENFVSRNAMNIQGLGPKIL-- 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             K    A  ++  AD++ L  ++  S  +     G GD +V N+   I + +N  L+R 
Sbjct: 458 --KRMVDAGLLKDIADLYYLNEQKIRSLGE-----GIGDKTVENILTQIEQSKNRELDRL 510

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I +LGI +VG++ A+ LA ++       + ++++I    D+   L+ +  +G+ IA AI+
Sbjct: 511 INALGIPNVGSKTAKDLANHF-------KNLDSLIDAKFDE---LVEIEGIGEDIANAII 560

Query: 614 EFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +F+     +  +   LK+   ++G + E+ +   ++   +  TG L K+ R +  EYV  
Sbjct: 561 KFFSQ-EEVKKIVKKLKDAGVNMGKKEEEKLEGPLKGLVICQTGALSKMTRQEFAEYVES 619

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            G   S  +++KT+I++VG+NPGSKL+KAQ  G+ IM+EE+F 
Sbjct: 620 KGGTFSENVTKKTNILVVGENPGSKLDKAQSYGITIMSEEEFF 662


>gi|282850287|ref|ZP_06259666.1| DNA ligase (NAD(+)) [Veillonella parvula ATCC 17745]
 gi|282579780|gb|EFB85184.1| DNA ligase (NAD(+)) [Veillonella parvula ATCC 17745]
          Length = 667

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 379/704 (53%), Gaps = 46/704 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  ++N +++R F  R+ +    K  +   + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFGNRVEKELGHKPSS---YVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRIGEDVTANVRTIKSIPLFLD-NAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P     R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITANRNLAFFAYAIGSEVGANIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +    F VN   R   T   ++   +     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLKSLENFKFSVNPHYRVCKTIDEVIEAIDYWGDKRHELPYDTDGMVIKVNSFDDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R+    PF+ P+ CP+
Sbjct: 357 DFID-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR    + G+  AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVR----REGE--AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +  ++      G  S  NL  +I+  ++  L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAIDDSKSRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A       N  Q I+  +    D+   L+ V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAATTIA-------NVVQSIDRFMTITKDE---LVAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P +   +E L +          +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPAHKEIIEGLTQAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL++
Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVINEEEFVELLKE 662


>gi|283458551|ref|YP_003363181.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18]
 gi|283134596|dbj|BAI65361.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18]
          Length = 747

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 251/735 (34%), Positives = 381/735 (51%), Gaps = 61/735 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R E + L  +I      YY    P + D+EYDAL RR + I    P L  ++ P   
Sbjct: 33  EALRAEYAELTDKIRAARRAYYNEDAPFLSDAEYDALYRRLEIIEAEHPHLIANDSPT-- 90

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE   +   VTH     SLE +++ E+LR ++T+     +    ++  +  E KI
Sbjct: 91  -QEVGGEAIEAFAPVTHLQRMYSLEDVFSFEELRAWLTKTEESARNLTGSAPQWLTELKI 149

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYI 193
           DG  + + Y  G  V AA RGDG +GEDV+  +R I +IP+ L+  N PE IE+RGEV+I
Sbjct: 150 DGLAVNLLYRNGTLVRAATRGDGTTGEDVTHNVRTIASIPQQLTGENHPEEIEIRGEVFI 209

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           S  DF  LN+ MIA G+ P+ANPRNAA+G LR+ +     +R L+ +VHG+G  + +   
Sbjct: 210 SSADFEKLNESMIAAGKNPFANPRNAAAGSLRQKDAAVTASRPLSMYVHGIGSRTGLDIA 269

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            QYE    +   G PV+     A+    +  + N+    R +L ++IDG+V KV++F+ Q
Sbjct: 270 TQYETYDLLASWGLPVSPYSEIADNTEAVFDFINKYGEQRHSLVHEIDGIVIKVNDFATQ 329

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            QLG  +R PRW +++K+  ++  T+LLDI + +GRTG +TP   +EPV + G+ +  AT
Sbjct: 330 AQLGYTSRVPRWAVAYKYPPEEVHTKLLDIRVDVGRTGRVTPYGVMEPVFVSGSTVERAT 389

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D +K            + + +GD V++++AG+VIP++V  +V  R    + F  PS
Sbjct: 390 LHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVAPVVALRDGTEREFVMPS 438

Query: 433 FCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            CP C S     L P K G +    RCT   +C AQ  ER+ +  SR AF+IE LG +  
Sbjct: 439 ECPSCGS----PLAPGKEGDV--DLRCTNPRSCPAQLTERVYYAASRGAFDIEALGFEAA 492

Query: 492 DFFFKSEDP----------AFSIRIPADI--FTLQRRQQ---TSTTKIENILGF------ 530
                   P           FS+ I  D+   T++R ++     T K+E +  F      
Sbjct: 493 KALTSPATPDTPPLTTEAHLFSLNI-EDLREVTIEREKKVKGVGTGKMERVPYFYTKPTK 551

Query: 531 ------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
                    +  NL+  + K +   L R + +L IRHVG   AR+LA  + S Q      
Sbjct: 552 ARPEPKPTKNTLNLFAELEKAKQQPLWRVLVALSIRHVGPTAARALAAEFGSMQ------ 605

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
               A    D   L  V  VG  IA +I+E++    +   V++            +++V 
Sbjct: 606 ----AIREADRERLAAVDGVGTTIADSIIEWFAEDWHAEVVDSWAAAGVRMEDSRDESVE 661

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL    R  A+E +   G   S  +S+KT  ++ G N GSKL+KAQQL
Sbjct: 662 RTLEGLTVVVTGTLNGYTRDGAKEAIISRGGKASGSVSKKTHFVVAGANAGSKLDKAQQL 721

Query: 705 GVKIMNEEQFLFLLQ 719
           G+KI++EE F  LL+
Sbjct: 722 GLKILDEEGFTALLE 736


>gi|285018504|ref|YP_003376215.1| NAD-dependent_DNA_ligase [Xanthomonas albilineans GPE PC73]
 gi|283473722|emb|CBA16225.1| putative nad-dependent_dna_ligase protein [Xanthomonas albilineans]
          Length = 838

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/657 (35%), Positives = 353/657 (53%), Gaps = 94/657 (14%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY  + P I D+EYDAL R  +A+  A P LAR + P      +G   +    +V H+IP
Sbjct: 25  YYVLADPAIPDAEYDALMRELEALESAHPALAREDSPT---RSVGARPDSGFPEVRHAIP 81

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDN----------SIFFTLEPKIDGTMITIRYE 144
            LSL   +    + +      RF +  D            +  F++EPK+DG  I++RYE
Sbjct: 82  MLSLANAFETPSVAEDADDRIRFAEVADFERRIERELELAAPVFSVEPKLDGLAISLRYE 141

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLAL 201
            G FV  A RGDG +GEDV+A +R + ++P   R L + +P ++EVRGE+Y+ +  F A 
Sbjct: 142 DGVFVQGATRGDGSTGEDVTANLRQVRSVPLRLRELGMPMPAVLEVRGEIYMPRAAFAAW 201

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEI-FAKGQYEML 258
           N   +    K  ANPRN A+G LR+L+P  +TR   L FF + +G+   +   +   + L
Sbjct: 202 NARALERNEKLLANPRNGAAGSLRQLDPA-VTRRRPLAFFAYSVGEVRGLELPETHSQTL 260

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           Q +R  GFPV      A  F G+++Y+  + + R  LPYDIDG+VYK+D++  Q  +G  
Sbjct: 261 QLLRRYGFPVAPEADTATGFDGLIAYFRRIGARRDALPYDIDGVVYKLDDYDQQTAMGFV 320

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           AR+PRW ++HKF  ++ ST L  I++QIGRTG  TPVARLEPV + G ++TNATLHN D 
Sbjct: 321 ARAPRWALAHKFPAQEQSTVLRAIEVQIGRTGAATPVARLEPVQVAGVIVTNATLHNADQ 380

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I  L           D+RVGD V+V+RAG+VIP+VV +I   R P   P++ P+ CP+C 
Sbjct: 381 IARL-----------DVRVGDTVIVRRAGDVIPEVVRVIEARRPPGTLPWTMPAVCPVCG 429

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF----- 493
           S +V++ +  T       RC+GGLAC+AQ+ E ++HF SR A +IEGLG++Q D      
Sbjct: 430 SELVKEDDAVT------WRCSGGLACAAQRKEAVRHFASRRALDIEGLGERQADALVEFG 483

Query: 494 FFKSEDPAFSIRIPADIFTL-------------QRRQQTSTTKIENILGFGDVS------ 534
           F +S    +++R+  D+  +             Q  +++    + +  G+  ++      
Sbjct: 484 FVQSLADLYALRV-EDLVRMKAALDAASSADLLQAVEESKGALVLDAAGYAALAQQVPGW 542

Query: 535 ----------------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
                                   NL   I+  R  +L RF+F+LGI H+G   A++LA 
Sbjct: 543 RHADFLRRHLAVDLGGKLATKWAENLLAGIDASRATTLSRFLFALGIPHLGETTAKALA- 601

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           ++L    F +    ++         L  +P +G  +A+AI  F++ P N   V+AL+
Sbjct: 602 HWLGSLAFVRSTPAVL---------LQALPDIGGEVARAIATFFEQPGNAAVVDALI 649



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 18/198 (9%)

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
           +GF D S          R  + L   + +L +  +G + A+ LA  Y +       ++ +
Sbjct: 653 IGFADESCP----PAALRERLDLAHLLSTLPVDKLGGKSAQRLAATYGT-------LDAL 701

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP---RNICAVEALLKEVSPSIGRHEKNVS 644
           +  N   W             A  +V +  +P   + +   EA ++ +  +  +      
Sbjct: 702 LRANESGWTGAGLS----AAGAANLVAYLADPAQRQGLLDAEAAMQRLLDAAPQQPTRHG 757

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             ++ +  V TG+L ++ R  A+  +  LGA V+  +S+KT  ++ G   GSKL+KAQ+L
Sbjct: 758 GPLDGQTAVLTGSLTQLTRDAAKARLEALGAKVAGSVSKKTSFVVAGSEAGSKLDKAQEL 817

Query: 705 GVKIMNEEQFLFLLQQYN 722
           GV + +E Q L  L ++ 
Sbjct: 818 GVVVWDERQLLTFLAEHE 835


>gi|228472685|ref|ZP_04057445.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624]
 gi|228276098|gb|EEK14854.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624]
          Length = 666

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/714 (32%), Positives = 379/714 (53%), Gaps = 66/714 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++ +L +E++ H+  YY    P I D E+D   +    +   +P   + +DPN P  ++
Sbjct: 6   QQIEALRKELNEHNYNYYVLDTPSISDYEFDQKLKALQDLEAQYP---QYKDPNSPTVRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+  +   VTH     SL+  ++ E++ ++  R+ +       + + F  E K DG  
Sbjct: 63  GGEITKNFPTVTHEFRMYSLDNSYSKEEVEEWEKRVLKGL---GTDKVSFVCELKYDGAS 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + Y+ G+ V A  RGDG  G++++A +R I ++P  L  + P+   +RGE+ I K  F
Sbjct: 120 IDLTYDHGQLVQATTRGDGVQGDEITANVRTIRSVPLTLKGDYPDHFHIRGEIIILKEGF 179

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254
             +N++ IA G  PY NPRN ASG L+  +  ++ +     L ++V G      +    Q
Sbjct: 180 KKMNEQRIAEGEDPYMNPRNTASGSLKLQDTAEVAKRPLDCLLYYVVG----DNLPVDNQ 235

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++ LQK R  GF V +  +  ++   ++ + N   + R  LPY+ DG+V KV+++  Q++
Sbjct: 236 FDSLQKARDWGFKVPSQSKLCHSTDEVMEFINYWDTRRHDLPYETDGVVIKVNDYQAQQE 295

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW I++KF  ++ +T L  I  Q+GRTG +TPVA L PV + G ++  A+LH
Sbjct: 296 LGYTSKSPRWAIAYKFKAEEVTTSLESISYQVGRTGAITPVANLSPVLLAGTIVKRASLH 355

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            + +GD+V V++ GE+IPK+  + +  RH  A P +F + C
Sbjct: 356 NADQIAKL-----------GLHIGDQVFVEKGGEIIPKITGVRLEARHEQATPVTFITHC 404

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S +VR+         A H C     C  Q   R++HF+SR A NIEGLG + ++  
Sbjct: 405 PECGSELVRNEGE------AQHYCPNAYGCPPQITGRIQHFISRKAMNIEGLGSETVELM 458

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+    A  I   AD++ L+  Q      I+N+   G  S  N+   I K + +  ER +
Sbjct: 459 FR----AGLIHNYADLYELKAEQ------IQNLERMGTRSAQNIITGIEKSKEVPFERVL 508

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+  A+ Y +   F              +  LI+V  +GD IAQ+++E
Sbjct: 509 FALGIRMVGESVAKKFARIYKTLDAF----------RTAPYEQLIQVDEIGDRIAQSVIE 558

Query: 615 FYQNPRNICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           F+ + RN   +E L        LKE +      + ++S  ++ K LV +G   +  R + 
Sbjct: 559 FFADDRNKEILERLQGYGLQFALKETA------QTSLSEALKGKTLVVSGVFARHSRDEI 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +   G  V + +S KT+ ++ G+N G SKLEKA QLG+ I++EE+F  ++Q
Sbjct: 613 KALIESHGGKVGSSISSKTNYVVAGENMGPSKLEKATQLGIPILSEEEFEKMIQ 666


>gi|157363572|ref|YP_001470339.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO]
 gi|190359296|sp|A8F541|DNLJ_THELT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157314176|gb|ABV33275.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO]
          Length = 678

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/706 (34%), Positives = 386/706 (54%), Gaps = 53/706 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  +K +  L +EI YH+  YY  + PII D EYD L +    +   +P+L     P+ P
Sbjct: 5   EDIKKRIEKLREEIEYHNYRYYVLADPIISDEEYDRLMQELIELEKKYPELV---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G ++      V HS P LSL+  ++   +R+F  R+ +  +K   ++I +  E KI
Sbjct: 62  SQRVGEKVLDEFRSVEHSEPMLSLDNTYDEAQIREFDKRVRKLLEK---DTIEYVTELKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + +RYE G+FV    RGDG  G+D++  ++ + +IP  L L  P  +EVRGE+Y+ 
Sbjct: 119 DGVSVALRYENGRFVLGLSRGDGTRGDDITENLKKVRSIP--LILREPVTVEVRGEIYMP 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
             +F  LN+E   V    +ANPRNA +G LR+L+ + I  R L+ F++ +        + 
Sbjct: 177 TEEFERLNEERKKVDGPLFANPRNATAGTLRQLDTSVIRNRRLDSFIYYVLSPERYGLQT 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q++ L+ ++ +GF VN   +       ++ Y+ +    +S L Y +DG+V KV+ F+ Q 
Sbjct: 237 QWDALKWLKKIGFKVNPYSQLCQNIDQVIDYWKQWIEKKSELSYWVDGVVVKVNHFNFQS 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +RSPRW I+ KF  ++A TR+L+I +Q+GRTGILTPVA LEP+ + G ++   +L
Sbjct: 297 ILGSTSRSPRWAIAFKFPAQRAKTRVLNIIVQVGRTGILTPVAELEPIQLAGTVVKRVSL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN DYI+            +DIR+GD+V V+++G +IP+VV +I +ER+   +    PS 
Sbjct: 357 HNFDYIE-----------EKDIRIGDQVYVEKSGGIIPQVVSVIADERNGSEKKIEIPSK 405

Query: 434 CPICQSRVVRDLNPKTGKLVA---AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           CP+C  +V        GK+ +   A RC     C A+    L+ FVSR A NI+GLG++ 
Sbjct: 406 CPVCSGKV--------GKIDSEDVALRCLNP-HCPAKLKRALETFVSRGALNIKGLGEKL 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D    S      ++  ADIF L   + +         G G   + NL   I + +   L
Sbjct: 457 IDRLVDSG----LVKDIADIFYLTPFELSQLGS-----GIGQKMIANLLAQIEQAKKTPL 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + +  LGI  VG + AR L + + S       I  +++ + D+   L ++  +G  IA+
Sbjct: 508 HKILTGLGIPLVGEKTARILTQKFRS-------IKRLLSSSVDE---LTQIEGIGIEIAK 557

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEY 669
            I E++ N +    +   L++   ++   E  V S+I  N     TGTL+   R + ++ 
Sbjct: 558 NIREYFDNEKTRQII-GKLEKAGLNLEEKEAVVQSKILSNLTFAVTGTLKNFTRDQIKQL 616

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           V  LG  V+  +S+ TD +IVGDNPGSKL KA+ LGVK++ E++FL
Sbjct: 617 VQSLGGQVTDSVSKSTDYVIVGDNPGSKLTKARNLGVKLLTEDEFL 662


>gi|29840375|ref|NP_829481.1| NAD-dependent DNA ligase LigA [Chlamydophila caviae GPIC]
 gi|75539575|sp|Q822R2|DNLJ_CHLCV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29834724|gb|AAP05359.1| DNA ligase [Chlamydophila caviae GPIC]
          Length = 662

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 239/703 (33%), Positives = 381/703 (54%), Gaps = 50/703 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           +R++  SL +E+   D CYY     +I D +YD   ++  AI    P+      P+    
Sbjct: 6   SREQYLSLCKELEKDDYCYYVLHNAVISDYDYDMKMQKLLAIEAQHPEWKVLWSPS---M 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G  ++ +   V HS P LS+   + +E+L  F +R+    +K    +  +TLE KIDG
Sbjct: 63  RLGDRVSGNFPVVAHSHPMLSIANAYTLEELNDFFSRV----EKTLGYAPIYTLELKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + IRYE+G  V A  RG+G  GED++A IR I ++P  L  + PE +EVRGEV+  + 
Sbjct: 119 IAVAIRYEQGILVQALSRGNGQKGEDITANIRTIRSLPLRLPKDAPEFLEVRGEVFFKRE 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  +N       +  +ANPRNAA G L+ L+  +   R L   V+G    S+   +  Y
Sbjct: 179 TFEQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQRNLELSVYG--SLSDENTESHY 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L   +  GFP+    RQ  T   +V   +E++ +R  LP +IDG+V KVD+   QK L
Sbjct: 237 DNLMLCKRWGFPIFGQPRQCQTIAEVVKSLDEIEGLRDQLPMEIDGVVIKVDDVEAQKAL 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+  RW +++K+A ++A T L +I IQ+GRTG+LTPVA+L PV + G+ ++ A+L+N
Sbjct: 297 GMTAKHYRWALAYKYAPERAETILENILIQVGRTGVLTPVAKLSPVFLSGSRVSRASLYN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           E+ I+            +DIR+GD V V++ GE+IPKVV + + +R    QP+  P FCP
Sbjct: 357 EEEIE-----------RKDIRIGDTVYVEKGGEIIPKVVGVCLEKRPEGTQPWVMPEFCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C  +V R+ +        + RCT  L CSA  +E+++ FV R A +I+ LG++ +   F
Sbjct: 406 VCHGKVTRESDK------VSVRCTNPL-CSAGAIEKIRFFVGRGALDIDHLGEKVITKLF 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   I    DIF +      +   +  + GF D SV N+  SI K +   L+RFI 
Sbjct: 459 D----LGVIHRCCDIFKI------TEEDLLQVPGFKDKSVKNVLKSIEKAKQAPLDRFIA 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGI +VG  +A +LA+++L          N+ A        L  +  +GD +A++I  +
Sbjct: 509 ALGIPYVGVRVASALAQHFL----------NLEAVMGASLEELKSIEGIGDKVAESIEAY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +     I  ++ +L      +  H +  SS    K  V TGTL+K+ R +A+  +   G 
Sbjct: 559 FNQQDTIEEIQKMLSLGVNVLPYHRE--SSSCLGKTFVITGTLKKMTRSEAEASIRNCGG 616

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            V + +S+ TD ++VG++PGSK +KAQ+L + I+NE   L +L
Sbjct: 617 KVGSSVSKSTDYLVVGEDPGSKFKKAQELEIPILNENDLLKIL 659


>gi|238019226|ref|ZP_04599652.1| hypothetical protein VEIDISOL_01090 [Veillonella dispar ATCC 17748]
 gi|237863925|gb|EEP65215.1| hypothetical protein VEIDISOL_01090 [Veillonella dispar ATCC 17748]
          Length = 667

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/703 (33%), Positives = 371/703 (52%), Gaps = 46/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  +++ +++R F  R+ +    K      + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFANRVEKELGHKPSA---YVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYLE-NAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEEGASIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +    F VN   R   T   ++   N     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLKSLESFKFSVNPHYRVCQTIDEVIETINYWDEKRHDLPYDTDGMVIKVNSFDDQEALG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R     PF+ P+ CP+
Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR    + G+  AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVR----REGE--AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +  ++      G  S  NL  +I   +   L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAIADSKTRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F                 L+ V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAAATIANVVKSMERFMTITKE----------ELVAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+  ++  +E L+           +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDSAHVEIIEGLIAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL+
Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLK 661


>gi|303228999|ref|ZP_07315809.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a]
 gi|302516413|gb|EFL58345.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a]
          Length = 666

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/703 (33%), Positives = 378/703 (53%), Gaps = 46/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L++E+++    YY    P + D EYD   R    +  + P+      P+ P  +
Sbjct: 4   KDRIEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETSHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G + +    KV H  P LSL  +++ +D+R F  R+ +    +   +  + LE KIDG 
Sbjct: 61  VGIKADGPFEKVVHGRPMLSLSNVFSADDVRAFDQRVTKELGHQ---TKAYVLELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IE+RGE Y+  ++
Sbjct: 118 AVNLHYENGIFVRAVTRGDGKVGEDVTANVRTIKSIPLYLE-NAPEFIEIRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G  S      Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSESGANIHTQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L  +    F VN   R   T   ++   N     R  LPYD DG+V KV++F  Q+ LG
Sbjct: 237 LLHTLENFHFSVNPHYRVCKTVDEVIEAINYWGEKRHELPYDTDGMVIKVNDFDDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T + DI I +GRTG+LTP   LEPV + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETIVKDITINVGRTGVLTPTGELEPVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD VL+ +A E+IP+V+ ++  +R     PF+ P  CP+
Sbjct: 357 DFIT-----------EKDIRIGDHVLIHKAAEIIPEVIRVLPEKRTGSEVPFTIPDHCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR    + G+  AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVR----RDGE--AAIRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I    D++ L      +T  I  +   G  S  NL  +I   ++  L+R +F 
Sbjct: 459 EK----LITNVVDLYHL------TTESIMGMDRMGKKSADNLVKAIADSKSRGLDRVLFG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A       N  + ++  +    D+   L+ V  +G  +A +I+E+ 
Sbjct: 509 LGIRLIGSKAAGTIA-------NVVKSMDRFLTITKDE---LVAVEEIGPTMADSIIEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           ++P++I  +  L+          ++   +E+E + +V TG L+ + R +A + + + GA 
Sbjct: 559 EDPQHIEIINGLIDAGLKMDVDVQETAGNEMEGETVVLTGKLEVMGRSEAGKLLEKHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT ++I G++ GSKL KA +LG++++NEE+F  LL+
Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVINEEEFTELLR 661


>gi|313125027|ref|YP_004035291.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551]
 gi|312291392|gb|ADQ65852.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551]
          Length = 694

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 247/715 (34%), Positives = 380/715 (53%), Gaps = 56/715 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E+LS E A +E   L + +  HD  YY  + P++ D  YDAL  R   +  AF DL  
Sbjct: 26  PVESLSAEAAEREARLLREAVREHDHRYYVAADPLVADRTYDALFNRLQELEDAF-DL-- 82

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            +D + P  ++GGE    L  V H  P LS+++     D+R F  R+     ++    + 
Sbjct: 83  -DDESSPTRRVGGEPLDELDTVEHVAPMLSIDQSVEAADVRDFDRRV-----REAVGEVR 136

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  EPK DG  + + YE G++V AA RGDG  G+DV+A +R I +IP  L  + P+ + V
Sbjct: 137 YVCEPKFDGLSVEVVYEDGEYVRAATRGDGERGDDVTAQVRTIRSIPLRLRGDYPDFLTV 196

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+ ++ F  LN E I    +P+ANPRNAA G LR+L+P+    R L+ F + +   
Sbjct: 197 RGEVYMPRDAFQELNRERIEADEEPFANPRNAAVGTLRQLDPSVTADRPLDCFFYDVLDA 256

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S++  + Q   L ++   G   N+ V       G ++Y +E+ + R  L Y+IDG V KV
Sbjct: 257 SDV-PETQTATLSRLDSWGLRTNDRVESVADIDGAIAYRDELMAAREDLNYEIDGTVIKV 315

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    ++QLGE +RS RW  ++KF  +   T + D+ +Q+GRTG LTPVA L+PV++GG 
Sbjct: 316 DRRDQREQLGETSRSVRWAFAYKFPARSEVTTMTDVVVQVGRTGRLTPVALLDPVDVGGV 375

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ A+LHN + I+ L            + +GD V +KRAG+VIP V +++  E+H +  
Sbjct: 376 TVSRASLHNPEEIERL-----------GVNIGDEVRIKRAGDVIPDVEEVV--EKHSEGT 422

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F FP  CP+C S V R+     G L     CTGGL C AQ +  + H+  R A +IEGL
Sbjct: 423 -FDFPEECPVCGSPVNRE-----GPLA---YCTGGLTCEAQLVRAVDHYAMRGALDIEGL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G ++++      D      +P D++ L+R +      +  + G+G  S  NL   I   +
Sbjct: 474 GGERVEQLV---DEGLIEGLP-DLYRLERDE------LSELEGWGKTSADNLVTEIEATK 523

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  L  F+  LGI  VG   AR+LA+ + S          + A  +     L  V  VG 
Sbjct: 524 SPELSSFLVGLGIPEVGGSTARNLARAFGS----------LDAVMDASVEELEEVEDVGP 573

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +A+ I EF+    N  A+ A ++ +       E     E++    VFTG+L  + R  A
Sbjct: 574 TVAEKIREFFDTESNRKAI-AEMRSLGVEPETAETAGGDELDGLTFVFTGSL-AVTRGDA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           QE V   GA  ++ +S  TD +++GDNPG SK + A    V +++E++F  LL +
Sbjct: 632 QELVQAHGANATSSVSGNTDYLVIGDNPGQSKRDDAAANDVPVLDEDEFAELLAE 686


>gi|260773253|ref|ZP_05882169.1| DNA ligase [Vibrio metschnikovii CIP 69.14]
 gi|260612392|gb|EEX37595.1| DNA ligase [Vibrio metschnikovii CIP 69.14]
          Length = 591

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 227/629 (36%), Positives = 358/629 (56%), Gaps = 46/629 (7%)

Query: 96  LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155
           LSL+  +   +L  F  RI    +        F  EPK+DG  +++ Y  G+   AA RG
Sbjct: 2   LSLDNAFADSELDSFFRRIGE--RVAATQHARFCCEPKLDGLAVSLLYIDGRLTQAATRG 59

Query: 156 DGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           DG +GE+++  +R I +IP  LS    P  IEVRGEV++ K  F  +N + +  G+K + 
Sbjct: 60  DGTTGENITENVRTIKSIPLKLSGTGWPSRIEVRGEVFMPKEGFERMNAQALKKGQKVFV 119

Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNG 271
           NPRNAA+G LR+L+ + IT  R L F+ + +G       +   Y+   +++  G PV+  
Sbjct: 120 NPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVVEGAELSTSHYDRFLQLKSWGLPVSPE 178

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            ++      +  YY  + + R+ LPY+IDG+V KVD+ +LQ++LG  AR+PRW I++KF 
Sbjct: 179 TQRVENAQQVKDYYQTIMAKRADLPYEIDGVVIKVDDIALQEKLGFVARAPRWAIAYKFP 238

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++  TRL +++ Q+GRTG +TPVA+LEP+ +GG  ++NATLHN D I+ L         
Sbjct: 239 AQEEMTRLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNADEIERL--------- 289

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
              + VGD V+++RAG+VIP++V +++  R  +AQP  FPS CP+CQS    D+    G+
Sbjct: 290 --GVMVGDTVIIRRAGDVIPQIVSVVLERRPQEAQPIIFPSHCPVCQS----DVERVEGE 343

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
            VA  RCTGGL C AQ+ E LKHFVSR A +++GLG + ++   + E     +  PAD+F
Sbjct: 344 AVA--RCTGGLVCQAQRKEALKHFVSRKAMDVDGLGDKVIEQLVERE----MVETPADLF 397

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+  + T   ++      G  S  N+  ++   +  +L RF+++LGIR VG   A +LA
Sbjct: 398 KLRAGELTVLDRM------GPKSAQNITQALINAKRTTLARFLYALGIREVGEATAMNLA 451

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL--L 629
           +++ + +  +Q               LI V  VG I+A  +  F+   +N   V+ L  L
Sbjct: 452 QHFCTLEAISQA----------SIEQLIGVQDVGMIVASHVHAFFSQEKNQRVVQELRDL 501

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
               P I   +      +  K +V TG+L ++ R +A+  +  LGA V+  +S+ TD++ 
Sbjct: 502 GVTWPDIEPQDVAKPQPLAGKTVVLTGSLVQLSRTEAKAALQSLGAKVTGSVSKNTDMLF 561

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G+  GSKL KAQ+LG++I +E+  L LL
Sbjct: 562 AGEAAGSKLVKAQELGIEIFSEQDLLDLL 590


>gi|304385588|ref|ZP_07367932.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284]
 gi|304328092|gb|EFL95314.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284]
          Length = 675

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 245/721 (33%), Positives = 399/721 (55%), Gaps = 59/721 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE +++ +A +    L +++    + YY    P + D  YD       A+  AFP++A 
Sbjct: 6   PIEKMNLTEANELAEQLREKLDRWSELYYTKDAPEVEDYVYDENYADLQALEQAFPEIAS 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+    ++GGE+     KVTH+ P LS+  +++ E+L +F  RI    QK   + + 
Sbjct: 66  ---PDSITQRVGGEVLAGFTKVTHTEPMLSMGDVFSKEELAEFDQRI----QKNVGHPVD 118

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  I++ YE GK V  + RGDG+ GED++  ++ I ++P+ LS   P  +EV
Sbjct: 119 YNVELKIDGLAISLVYEDGKLVQGSTRGDGNIGEDITKNLKTIKSVPQTLSR--PLSLEV 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245
           RGE Y+ K  F  LN++  A G+  +ANPRNAA+G LR+LN T IT  R L+ F++ L +
Sbjct: 177 RGECYMPKAAFAKLNEQQSAAGKSVFANPRNAAAGSLRQLN-TQITKARELDTFIYTLVE 235

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              +  + Q+E +Q M  LGF  N      ++   +  Y    +  R  LPY IDG+V K
Sbjct: 236 PEVLGVQTQHEAIQAMAELGFNTNPTQTVCHSLEEVWDYIERYEGQRDDLPYGIDGIVLK 295

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++  LQ +LG   + PRW I++KF  ++ +T + DI+  +GRTG++TP A ++PV + G
Sbjct: 296 VNDLGLQAELGHTVKVPRWEIAYKFPPEEEATVVRDIEWSVGRTGVVTPTAVMDPVQLAG 355

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ ATL+N D +             +D+R+GD VL+ +AG++IP++  +++++R  D 
Sbjct: 356 TTVSRATLNNVDQLT-----------AKDVRIGDTVLLHKAGDIIPEITRVVLDKRPADV 404

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
              + P+ CP C   +V  LN +      A RC     C AQ + RL+HF SR+A NI G
Sbjct: 405 ADLTIPNQCPSCGKELVH-LNGEV-----ALRCINP-DCPAQIVARLEHFGSRNAMNIMG 457

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q+   +      F I    D++ L   Q      +  + GF +  V NL ++I+  
Sbjct: 458 LGPKQIQQLYAK---GF-IHHFDDLYKLTADQ------LSQLDGFKEKRVNNLLEAIDSS 507

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R  SLER +  LGI+ VG ++AR+LA+ + S       ++ ++  + +++ +   V  VG
Sbjct: 508 RQNSLERLVNGLGIQGVGTKMARTLAEAFGS-------MDRLMEASVEEFDA---VDTVG 557

Query: 606 DIIAQAIVEFYQN--PRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQ 659
           + +A  +  F+Q+   RN+      LK V  ++       S   EN    KK+V TG L+
Sbjct: 558 ETLANNLATFFQSEAARNMIDE---LKAVDVNMEYLGAQPSEAPENYFNGKKVVLTGKLE 614

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R++ +E +  LGA V+  +S+KTD++I G + GSKL KAQ LGV++++E   L  L+
Sbjct: 615 HFTRNELKEKLLNLGADVAGSVSKKTDVLIAGADAGSKLTKAQDLGVEVIDEATALEKLE 674

Query: 720 Q 720
           Q
Sbjct: 675 Q 675


>gi|270290149|ref|ZP_06196375.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4]
 gi|270281686|gb|EFA27518.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4]
          Length = 675

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 245/721 (33%), Positives = 400/721 (55%), Gaps = 59/721 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE +++ +A +    L +++    + YY    P + D  YD       A+  AFP++A 
Sbjct: 6   PIEKMNLTEANELAEQLREKLDRWSELYYTKDAPEVEDYVYDENYADLQALEQAFPEIAS 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+    ++GGE+     KVTH+ P LS+  +++ E+L +F  RI    QK   + + 
Sbjct: 66  ---PDSITQRVGGEVLAGFTKVTHTEPMLSMGDVFSKEELAEFDQRI----QKNVGHPVD 118

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  I++ YE GK V  + RGDG+ GED++  ++ I ++P+ LS   P  +EV
Sbjct: 119 YNVELKIDGLAISLVYEDGKLVQGSTRGDGNIGEDITKNLKTIKSVPQTLSR--PLSLEV 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245
           RGE Y+ K  F  LN++  A G+  +ANPRNAA+G LR+LN T IT  R L+ F++ L +
Sbjct: 177 RGECYMPKAAFAKLNEQQSAAGKSVFANPRNAAAGSLRQLN-TQITKARELDTFIYTLVE 235

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              +  + Q+E +Q M  LGF  N      ++   +  Y    +  R  LPY IDG+V K
Sbjct: 236 PEVLGVQTQHEAIQAMAELGFNTNPTQTVCHSLDEVWDYIERYEGQRDDLPYGIDGIVLK 295

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++  LQ +LG   + PRW I++KF  ++ +T + DI+  +GRTG++TP A ++PV + G
Sbjct: 296 VNDLGLQAELGHTVKVPRWEIAYKFPPEEEATVVRDIEWSVGRTGVVTPTAVMDPVQLAG 355

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ ATL+N D +             +D+R+GD VL+ +AG++IP++  +++++R  D 
Sbjct: 356 TTVSRATLNNVDQLT-----------AKDVRIGDTVLLHKAGDIIPEITRVVLDKRPADV 404

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
              + P+ CP C   +V  LN +      A RC     C AQ + RL+HF SR+A NI G
Sbjct: 405 ADLTIPNQCPSCGKELVH-LNGEV-----ALRCINP-DCPAQIVARLEHFGSRNAMNIMG 457

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q+   +      F I    D++ L   Q      +  + GF +  V NL ++I++ 
Sbjct: 458 LGPKQIQQLYAK---GF-IHHFDDLYKLTADQ------LSQLDGFKEKRVNNLLEAIDRS 507

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R  SLER +  LGI+ VG ++AR+LA+ + S       ++ ++  + +++ +   V  VG
Sbjct: 508 RQNSLERLVNGLGIQGVGTKMARTLAEAFGS-------MDRLMEASVEEFDA---VDTVG 557

Query: 606 DIIAQAIVEFYQN--PRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQ 659
           + +A  +  F+Q+   RN+      LK V  ++       S   EN    KK+V TG L+
Sbjct: 558 ETLANNLATFFQSEAARNMIDE---LKAVDVNMEYLGAQPSEAPENYFNGKKVVLTGKLE 614

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R++ +E +  LGA V+  +S+KTD++I G + GSKL KAQ LGV++++E   L  L+
Sbjct: 615 HFTRNELKEKLLNLGADVAGSVSKKTDVLIAGADAGSKLTKAQDLGVEVIDEATALEKLE 674

Query: 720 Q 720
           Q
Sbjct: 675 Q 675


>gi|289577826|ref|YP_003476453.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9]
 gi|289527539|gb|ADD01891.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9]
          Length = 662

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 242/706 (34%), Positives = 397/706 (56%), Gaps = 49/706 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L ++I+YH+  YY   +P I D EYD L R    +   +P+L   + P+ P  +
Sbjct: 4   KERINELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEL---KTPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +L+ F  R+     ++    + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHIVPMLSLANAFSEGELKDFDRRV-----REAVGDVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G F   + RGDG  GE+V+  ++ I +IP  L  N+  +  VRGEV++ +  
Sbjct: 116 SVELIYENGIFTVGSTRGDGIIGENVTPNLKTIKSIPLRLKDNVSLV--VRGEVFMPRAS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L +      K   E
Sbjct: 174 FERLNTEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQRVEGRKFKTHVE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ ++  GF V    ++ +    ++    E+++++  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLQFLKEQGFKVIPIHKKCSNIDEVIREIEEIRNLKDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKEPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V++++AGE+IP+VV+++  ER    + F  P+ CP+
Sbjct: 354 DYIK-----------EKDIRIGDTVIIQKAGEIIPEVVEVVKEERTGHEREFIMPNKCPV 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR      G+  A  RCT  + C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVR----LPGE--AVRRCT-SVNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      I   AD++ L+        ++      GD SV NL ++I + +   L+R +F 
Sbjct: 456 NG----LIHNIADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++       + +++I+    +D+  L   P VG  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHF-------KTMDDIMKAKFEDFTKL---PDVGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +N+  +E L K         ++ VSS  E K  V TG L+   R +A   + + G  
Sbjct: 556 AEKQNVETIEKLKKAGVNMKKLSKEKVSSIFEGKTFVLTGALENYTREEATRIIEERGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           V+  +S+KTD ++VG +PGSKL+KAQ+LG++I++E+QF  +L+  N
Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIEIIDEKQFEEMLKGEN 661


>gi|300691610|ref|YP_003752605.1| DNA ligase [Ralstonia solanacearum PSI07]
 gi|299078670|emb|CBJ51328.1| DNA ligase [Ralstonia solanacearum PSI07]
          Length = 813

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 239/681 (35%), Positives = 362/681 (53%), Gaps = 73/681 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY   +P + D+EYD L R  +A+    P+L   + P+ P  ++GG +      V H +P
Sbjct: 31  YYVLDQPSVPDAEYDRLYRELEALEADHPEL---KTPDSPTLRVGGAVLPEFAPVRHVVP 87

Query: 95  TLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
            LS+  E     +    F   + R     + D S+ +  E K DG  I +RYEKG  V A
Sbjct: 88  MLSIRTETDTTADGALAFDASVRRELGLAESDPSVEYAAELKFDGLAINLRYEKGFLVQA 147

Query: 152 ALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
           A RGDG +GEDV+  IR I  IP   R ++  +P+++EVRGEVY+ ++DF  LN      
Sbjct: 148 ATRGDGTTGEDVTQNIRTIRQIPLGLRPVNGAVPDVLEVRGEVYMRRDDFERLNARQRER 207

Query: 209 GRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEM-------LQK 260
           G K + NPRN A+G +R+L+P     R L+FF +GLG+     A G  EM       L  
Sbjct: 208 GEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGE-----AAGWAEMPGTHAGVLDA 262

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +   GFPV++         G+V ++ ++++ R +LP+DIDG+VYKV+  +LQ++LG R R
Sbjct: 263 LVAFGFPVSHERAAVTGGEGLVRFHADIRAKRDSLPFDIDGVVYKVNSLALQRELGFRTR 322

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
            PRW ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNATLHNED ++
Sbjct: 323 EPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNATLHNEDEVR 382

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPDA 425
                       +D+RVGD V+V+RAG+VIP+VV +++  R                P  
Sbjct: 383 -----------RKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPKY 431

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF  P  CP+C S VVR+     G+ VA  RC+GGL CSAQ+ E ++HF  R   +IEG
Sbjct: 432 PPFELPKSCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAGRRMMDIEG 485

Query: 486 LGKQQLDFFFKSE---DPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDVSVT---NL 538
           LG++ +D   + E     A   R+  D F  ++RR           +  G ++     NL
Sbjct: 486 LGERYIDNLVELEYVHGIADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATKWAENL 545

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
              I   +   L RF+F+LGIRHVG   A++LA +  S     +    +          L
Sbjct: 546 LAGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL----------L 595

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTG 656
           + +P VG  +A+AI +F+  P+N  A++ALL       G H        ++E  +L    
Sbjct: 596 LTLPDVGATVAEAIADFFAEPKNQQALDALLAAGVTPQGEHPPGAKLRDQLEPAELYAAL 655

Query: 657 TLQKIQRHKAQEYVTQLGAVV 677
            + K+   ++++  T + A+ 
Sbjct: 656 GVPKLTATRSKQLATLVPALA 676



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +V TGTL  + R  A+  +   GA VS  +S+KTD ++ G   GSKL +AQ+LGV
Sbjct: 734 LSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSKKTDYLVAGVEAGSKLARAQELGV 793

Query: 707 KIMNEEQFLFLLQ 719
           ++++E   L LLQ
Sbjct: 794 RVLDEAGMLALLQ 806


>gi|299820617|ref|ZP_07052507.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601]
 gi|299818112|gb|EFI85346.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601]
          Length = 674

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 249/713 (34%), Positives = 386/713 (54%), Gaps = 63/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K   +L +E++ +   YY    P + D  YD   +    I  A PD    + P+    +
Sbjct: 5   KKRYEALIEELNQYSYDYYVQDNPSVEDVVYDKAMQELLKIEEAHPDWITVDSPS---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KVTH  P LSL   +  +DLR F  RI    +  D     +  E KIDG 
Sbjct: 62  VGGEILEGFQKVTHKTPMLSLGNAFGEDDLRDFDRRIQD--RIGDGTEYEYMCELKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ YE G++   A RGDG +GED++A +R + +IP  L   +   IEVRGE Y+ K  
Sbjct: 120 AVSLIYENGEYRQGATRGDGTTGEDITANLRTVRSIPIKLKETLS--IEVRGETYMPKKS 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY 255
           F  LN      G   +ANPRNAA+G LR+L+ T I   R L+ F++ +    ++      
Sbjct: 178 FQKLNGAREEEGLPLFANPRNAAAGSLRQLD-TKIAAKRNLDIFLYSVADFGDMGVTKHS 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L  +  LG  VN   R       +++Y  E  + RS L Y+IDG+V K+++   Q+++
Sbjct: 237 EGLDYLEKLGLKVNKERRVCKNIEEVLAYVEEWTAKRSDLAYEIDGIVVKLNDLRQQEEV 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   +SPRW I++KF  ++  T L DI++++GRTG++TP A L+PV++ G  ++ A+LHN
Sbjct: 297 GYTVKSPRWAIAYKFPAEEVPTVLRDIELRVGRTGVITPTAILDPVHVAGTTVSRASLHN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED IK            +DIR+ D V++K+AG++IP+V+  +  +R    + F  P  CP
Sbjct: 357 EDLIK-----------QKDIRIKDTVMIKKAGDIIPEVIRSLPEKRTGSEEEFHMPVHCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S +VR      G++  A RC     C AQ  E L HFVSR A NI+GLG++ +   F
Sbjct: 406 ECGSELVR----LEGEV--ALRCINP-KCPAQLKEGLIHFVSRSAMNIDGLGEKVVRQLF 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             E     I   AD++ L + +     ++      G+ SVTNL  +I K +  SLER +F
Sbjct: 459 THE----LIHDVADLYFLSKEELLQLERM------GEKSVTNLLAAIEKSKQNSLERLLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            LGIRHVGA+ ARSLA ++ +  N  +  + ++IA N+           +G+I+A +IV 
Sbjct: 509 GLGIRHVGAKAARSLAIHFETMDNVKEASLEDLIAIND-----------IGEIMADSIVT 557

Query: 615 FYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHK 665
           +++N      V +LL+E+  +       G   + V  E      KK+V TG L++++R +
Sbjct: 558 YFENEE----VHSLLQELERAGVNMTYTGPRLEEVPEEDLVFAGKKVVLTGKLEQLKRDE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  +  LG  VS  +S+ TDI++ G + GSKLEKA++L + I +E   L  L
Sbjct: 614 AKALIESLGGSVSGSVSKNTDIVVAGSDAGSKLEKAEELSIPIWSENDLLEYL 666


>gi|83748812|ref|ZP_00945825.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551]
 gi|207743250|ref|YP_002259642.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein
           [Ralstonia solanacearum IPO1609]
 gi|83724504|gb|EAP71669.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551]
 gi|206594647|emb|CAQ61574.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein
           [Ralstonia solanacearum IPO1609]
          Length = 813

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/670 (35%), Positives = 355/670 (52%), Gaps = 63/670 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY   +P + D+EYD L R  +A+    P+L     P+ P  ++GG +      V H +P
Sbjct: 31  YYVLDQPSVPDAEYDRLYRALEALEAEHPEL---RTPDSPTLRVGGAVLPEFAPVRHVVP 87

Query: 95  TLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
            LS+  E     +    F   + R     + D  I +  E K DG  I +RYE+G  V A
Sbjct: 88  MLSIRTETDTTADGALAFDASVRRELGLAESDPPIEYAAELKFDGLAINLRYEQGFLVQA 147

Query: 152 ALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
           A RGDG +GEDV+  IR I  IP   R +   +P+++EVRGEVY+ ++DF  LN      
Sbjct: 148 ATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLNARQRER 207

Query: 209 GRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKGQYEMLQKMRCLG 265
           G K + NPRN A+G +R+L+P     R L+FF +GLG+ +      +    ML  +  LG
Sbjct: 208 GEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPETHSGMLDALVALG 267

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           FPV+          G+V ++  + + R +LP+DIDG+VYKV+  +LQ++LG R R PRW 
Sbjct: 268 FPVSKERAAVMGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNALALQRELGFRTREPRWA 327

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNATLHNED ++     
Sbjct: 328 VAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEVR----- 382

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPDAQPFSF 430
                  +D+RVGD V+V+RAG+VIP+VV +++  R                P   PF  
Sbjct: 383 ------RKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPKYPPFEL 436

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S VVR+     G+ VA  RC+GGL CSAQ+ E ++HF  R   +IEGLG++ 
Sbjct: 437 PKSCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERY 490

Query: 491 LDFFFKSE---DPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDVSVT---NLYDSIN 543
           +D   + E     A   R+  D F  ++RR           +  G ++     NL   I 
Sbjct: 491 IDNLVELEYVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAENLLAGIQ 550

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +   L RF+F+LGIRHVG   A++LA +  S     +    +          L+ +P 
Sbjct: 551 ASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL----------LLTLPD 600

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKI 661
           VG  +A+AI +F+  P+N  A++ALL       G H  +    S++E  +L     + K+
Sbjct: 601 VGATVAEAIADFFDEPKNQQALDALLAAGVAPQGEHPPSAKLRSQLEPAELYAVLGVPKL 660

Query: 662 QRHKAQEYVT 671
              ++++  T
Sbjct: 661 TATRSKQLAT 670



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 47/73 (64%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +V TGTL  + R  A+  +   GA VS  +S+KTD ++ G+  GSKL KA++LGV
Sbjct: 734 LSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSKKTDYVVAGEEAGSKLAKAEELGV 793

Query: 707 KIMNEEQFLFLLQ 719
           K+++E   L LLQ
Sbjct: 794 KVLDEAGMLALLQ 806


>gi|218295128|ref|ZP_03495964.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23]
 gi|218244331|gb|EED10856.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23]
          Length = 674

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 244/713 (34%), Positives = 396/713 (55%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E AR+ ++ L   I YH+  YY    P I D+EYD L R    +   FP+L   + P
Sbjct: 1   MTLEAARRRVNELRDLIRYHNYLYYVLDAPEISDAEYDRLLRELKELEERFPEL---QSP 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G     S F+ V H     SL+  ++++++R F  RI R   +K      +T+
Sbjct: 58  DSPTEQVGARPLESTFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK--GPFLYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  I TIPR L+  +P+ +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIRTIPRRLT-GVPDRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247
           VY+    FL LN E+   G + + NPRNAA+G LR+ +P    R      F+  GLG   
Sbjct: 175 VYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATFYALGLG-LE 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E   K Q+++L  +R  GFPV +G  +A    G+   Y      R  LP++ DG+V K+D
Sbjct: 234 ETGLKSQHDLLLWLRERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEADGVVVKLD 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +L ++LG  AR+PR+ +++KF  ++  TRLL +  Q+GRTG +TPV  LEPV I G+ 
Sbjct: 294 DLALWRELGYTARAPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLEPVFIEGSE 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  TLHNE +I+ L           D+R+GD VLV +AG VIP+V+ ++   R  + +P
Sbjct: 354 VSRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKERRTGEEKP 402

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             +P  CP C   ++     K GK+   HRC   L C A++ E ++H+ SR A +I+GLG
Sbjct: 403 ILWPENCPECGHALI-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIQGLG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++   +       +R  AD++ L++        + N+   G+ S  NL   I + + 
Sbjct: 454 EKLIEKLLEK----GLVRDVADLYRLKKED------LVNLERMGEKSAENLLRQIEESKG 503

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             LER +++LG+  VG  +AR+LA  +         ++ ++    +D   L+ V  VG++
Sbjct: 504 RGLERLLYALGLPGVGEVLARNLALRF-------GHMDRLLEAGLED---LLEVEGVGEL 553

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            A+AI+   ++P     V   LKE    +   E+   + ++    V TG L +  R + +
Sbjct: 554 TARAILNTLKDPEFRDLVRR-LKEAGVEMEAKEREGEA-LKGLTFVITGELSR-PREEVK 610

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  ++EE+   L+++
Sbjct: 611 ALLRRLGAKVTDSVSRKTGFLVVGENPGSKLEKARALGVPTLSEEELYRLIEE 663


>gi|55981066|ref|YP_144363.1| DNA ligase [NAD+] [Thermus thermophilus HB8]
 gi|118780|sp|P26996|DNLJ_THET8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]; AltName: Full=Tth DNA ligase
 gi|94721|pir||A40363 DNA ligase (NAD) (EC 6.5.1.2) - Thermus aquaticus
 gi|155088|gb|AAA27486.1| DNA ligase [Thermus thermophilus]
 gi|155090|gb|AAA27487.1| DNA ligase [Thermus thermophilus]
 gi|55772479|dbj|BAD70920.1| DNA ligase [NAD+] [Thermus thermophilus HB8]
          Length = 676

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 255/720 (35%), Positives = 400/720 (55%), Gaps = 67/720 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK ++ L   I YH+  YY  + P I D+EYD L R    +   FP+L   + P
Sbjct: 1   MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEL---KSP 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G     + F+ V H     SL+  +N+++L+ F  RI R   +K      +T+
Sbjct: 58  DSPTLQVGARPLEATFRPVRHPTRMYSLDNAFNLDELKAFEERIERALGRK--GPFAYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  VY A RGDG  GE+V+  +  IPTIPR L   +PE +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLK-GVPERLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247
           VY+    FL LN+E+   G + + NPRNAA+G LR+ +P    +      F+  GLG   
Sbjct: 175 VYMPIEAFLRLNEELEERGERIFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLG-LE 233

Query: 248 EIFAKG---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           E+  +G   Q+ +L  ++  GFPV +G  +A    G+ + Y +    R  LP++ DG+V 
Sbjct: 234 EVEREGVATQFALLHWLKEKGFPVEHGYARAVGAEGVEAVYQDWLKKRRALPFEADGVVV 293

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+DE +L ++LG  AR+PR+ I++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV + 
Sbjct: 294 KLDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFLE 353

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  +
Sbjct: 354 GSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGE 402

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P  +P  CP C  R++     K GK+   HRC   L C A++ E ++HF SR A +I+
Sbjct: 403 ERPIRWPETCPECGHRLL-----KEGKV---HRCPNPL-CPAKRFEAIRHFASRKAMDIQ 453

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDS 541
           GLG++ ++   +       ++  AD++ L++         E+++G    G+ S  NL   
Sbjct: 454 GLGEKLIERLLEK----GLVKDVADLYRLRK---------EDLVGLERMGEKSAQNLLRQ 500

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I + +   LER +++LG+  VG  +AR          N A    N+          L+ V
Sbjct: 501 IEESKKRGLERLLYALGLPGVGEVLAR----------NLAARFGNMDRLLEASLEELLEV 550

Query: 602 PLVGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
             VG++ A+AI+E  ++P  R++      LKE    +   EK   + ++    V TG L 
Sbjct: 551 EEVGELTARAILETLKDPAFRDLV---RRLKEAGVEMEAKEKGGEA-LKGLTFVITGELS 606

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  R + +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  + EE+   LL+
Sbjct: 607 R-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLE 665


>gi|169335238|ref|ZP_02862431.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257976|gb|EDS71942.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM
           17244]
          Length = 659

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 239/706 (33%), Positives = 388/706 (54%), Gaps = 56/706 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +KE+  L +E+  H+  YY+   P I D +YD L R+   +   +P   +      
Sbjct: 1   MEDIKKEIEKLTEELLEHNRKYYEEDNPSISDYDYDMLIRKLTKLEEEYPQYKKE---YS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P +++GG+   +  KV H    LSL   ++ ++L +F  R+     KK+  +  +TLE K
Sbjct: 58  PTDRVGGKALDAFDKVKHEYKQLSLSNAFSYDELLEFDQRV-----KKEIENPVYTLENK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + Y+KG     A RGDG  GEDV+  ++ I +IP  L LN    + VRGEV I
Sbjct: 113 FDGLTIVLTYKKGLLSVGATRGDGEVGEDVTLNVKTIKSIP--LKLNEEVDLTVRGEVLI 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K++F  +N E    G   +ANPRN A+G +R+L+      R L+ F+  L         
Sbjct: 171 YKDNFEKINKEREKEGLSLFANPRNMAAGSIRQLDSKIAAKRNLDCFIFNLEHIEGKTLS 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM---KSIRSTLPYDIDGLVYKVDEF 309
              E L  ++ LGF V+    +   F  +   ++E+   +  R ++PY+IDG V K+++ 
Sbjct: 231 SHSESLDYLKSLGFKVS----EYKIFDNMKDIFDELIKKEDSRKSMPYEIDGAVIKLNDL 286

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             ++ LG   ++PRW I++KF+E +  T+L DI + +GRTG LTPVA LE V I G+ ++
Sbjct: 287 EERELLGSTNKNPRWAIAYKFSETKVKTKLTDIIVNVGRTGTLTPVAILEGVRIDGSFVS 346

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNEDYI              DIR+GD V+VK+AGE+IP+V+  +  +R  D + F 
Sbjct: 347 RATLHNEDYI-----------NDNDIRIGDNVIVKKAGEIIPQVISSVKEDRKGDEKLFE 395

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C   VVR    + G   +A +C   + C A+    + HF SR+A NI+ LG++
Sbjct: 396 MPKNCPVCGKEVVR----QEGN--SAVKCI-NVDCPAKISREIIHFASREAMNIDTLGER 448

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+   + +     I+  +DI+ L+ +++     IE++   G+ SV+N+ ++I K +  S
Sbjct: 449 VLETLIEKD----LIQDVSDIYKLEDKKKD----IESLEKMGEKSVSNMLNAIEKSKENS 500

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LE  +F+L I  VG + A+ LAK + +  N            N  +  ++ +  +GD +A
Sbjct: 501 LEDLLFALSINLVGKQGAKLLAKRFKTMDNLI----------NASYEDIVDINEIGDKMA 550

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             I+ F++NP  +  +E  LK V  ++   +E+N   + E    V TGTL K +R +A++
Sbjct: 551 TEIINFFKNPSKLALIER-LKSVGVNMEYINEENEELKFEGMTFVLTGTLSKYKRSEAKK 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            +   G  VS+ +S+KT  ++ G+N GSK EKA++LGVKI++E++F
Sbjct: 610 IIENYGGKVSSSVSKKTTYVLAGENAGSKEEKAKELGVKIISEDEF 655


>gi|22298400|ref|NP_681647.1| NAD-dependent DNA ligase LigA [Thermosynechococcus elongatus BP-1]
 gi|81743454|sp|Q8DKK2|DNLJ_THEEB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|22294579|dbj|BAC08409.1| DNA ligase [Thermosynechococcus elongatus BP-1]
          Length = 689

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 249/719 (34%), Positives = 384/719 (53%), Gaps = 67/719 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++L  L Q  SY    YY   +PI+ D  YD L R    +  A+P+      P+ P  +I
Sbjct: 12  QQLRRLLQRASY---AYYALDQPIMEDEVYDQLYRELQELEAAYPEYI---TPDSPTQRI 65

Query: 79  GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFW----QKKDDNSIFFTLEPK 133
           G E  +S F+ V+H IP  SLE  +   D+  +  R  R+W    Q++      +  E K
Sbjct: 66  G-EAPVSQFESVSHRIPLYSLENAFTFADMVAWQERWQRYWRTLRQEEPLPPAEYVCELK 124

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  + + YE G  V  A RGDG  GEDV++ +R I  IP  L+L N P ++EVRGE +
Sbjct: 125 MDGVALALTYENGLLVRGATRGDGQRGEDVTSNVRTIRPIPLRLALDNPPPVVEVRGEAF 184

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-------- 243
           +    F  LN E  A G  P+ANPRNAA+G LR+L+P  +  R L+FF + L        
Sbjct: 185 LPLERFHQLNQERQAQGEPPFANPRNAAAGTLRQLDPRIVAQRQLDFFAYALHLPEGGSV 244

Query: 244 --GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+      + Q ++L  ++ LGF VN           + +YY+  ++ R  LPY  DG
Sbjct: 245 PLGENQAGEPQSQRQVLYALQHLGFRVNPHHADCPDLEAVKAYYDRWQTARHQLPYLTDG 304

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K+++  LQ+ LG   + PR  I+ K+  +QA T +L I +Q+GRTG LTPVA L PV
Sbjct: 305 IVVKLNDLKLQQTLGFTQKFPRGSIAWKYEPEQAITDVLAITVQVGRTGALTPVAELAPV 364

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  ++ ATLHN DYI  L           D+ +GD+V++ +AGE+IP++V +    R
Sbjct: 365 QLAGTTVSRATLHNADYIAEL-----------DLHIGDKVVIHKAGEIIPEIVRVFPELR 413

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P A+PF+ P+ CP C   VVR  N       A  RC G   C A    +++H+ SRDA 
Sbjct: 414 PPTARPFTMPTACPECHQPVVRPAN------EAVSRC-GNPRCPAIVRGQIRHWASRDAL 466

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+GLG++ +      E     +R PAD++ L   Q  S  ++      G  S   L  +
Sbjct: 467 DIQGLGEKLVQQLVTKE----LVRTPADLYRLTAAQLLSLERM------GQKSADKLLVA 516

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   +     R ++ LGIRHVG+  A+ LA  + S +  A      +A        L  V
Sbjct: 517 IANSKQQPWPRVLYGLGIRHVGSVNAQLLADRFKSVEELA---TATVA-------DLCGV 566

Query: 602 PLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTG 656
             +G+ IAQA+ E++Q+P +   I  ++AL  +++ ++   +K +++E  +  K+ V TG
Sbjct: 567 DGIGEEIAQAVQEWFQDPDHQSLIADLQALGLQLAAALHPAQKALTTEKSLNGKRFVITG 626

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           TL  + R +A+  + + G  VS  +SR+TD ++VG+  GSKL +AQ+LG+  +NE + +
Sbjct: 627 TLPTLTREQAKALIQKHGGHVSESVSRQTDYLVVGEKAGSKLRRAQELGIPCINETELI 685


>gi|289804564|ref|ZP_06535193.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 551

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/593 (37%), Positives = 348/593 (58%), Gaps = 55/593 (9%)

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           E K+DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRG
Sbjct: 2   ELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRG 61

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248
           EV++ +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    
Sbjct: 62  EVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG---- 117

Query: 249 IFAKGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           I   G+        L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V
Sbjct: 118 ILEGGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVV 177

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV +
Sbjct: 178 IKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQV 237

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  
Sbjct: 238 AGVLVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPE 286

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           + +P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A ++
Sbjct: 287 ETRPIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDV 340

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ 
Sbjct: 341 DGMGDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALE 390

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVP 602
           K +  +  RF+++LGIR VG   A  LA Y+ + +   A  I+            L +VP
Sbjct: 391 KAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE-----------LQKVP 439

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTL 658
            VG ++A  +  F+    N   +  LL E     +P +  + + + S    K +V TG+L
Sbjct: 440 DVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INAQEIDSPFAGKTVVLTGSL 498

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            ++ R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E
Sbjct: 499 SQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDE 551


>gi|42521704|ref|NP_967084.1| DNA ligase [Bdellovibrio bacteriovorus HD100]
 gi|81618744|sp|Q6MRL9|DNLJ_BDEBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|39574234|emb|CAE77738.1| DNA ligase [Bdellovibrio bacteriovorus HD100]
          Length = 684

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 251/706 (35%), Positives = 382/706 (54%), Gaps = 53/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           ++K    L++ IS HD  Y+   KP I D EYD L      I      L  S+ P+    
Sbjct: 20  SKKRHEELKKIISEHDHNYHVLDKPTITDYEYDQLFAELLDIEKNPKGLDLSDSPS---Q 76

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG +     K  H +P LSL   ++ ED+ +F  R+ +F   +D   + +  E K DG
Sbjct: 77  RVGGTVLEGFTKAQHRLPMLSLANSYSPEDIFEFDERVRKFLNTED--PVEYLCELKFDG 134

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISK 195
             + + YE G+ V A  RGDG  GEDV+  I+ I +IP  LS  N P ++EVRGEV + K
Sbjct: 135 LSMELIYENGQLVRAITRGDGTVGEDVTHNIKTIKSIPLKLSHKNPPPLLEVRGEVLMFK 194

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN+     G++ +ANPRNAA+G +R+L+     +R L FF + LG         Q
Sbjct: 195 EDFARLNETQQENGQQTFANPRNAAAGTVRQLDSRIAASRPLRFFGYALGAVEGETFNTQ 254

Query: 255 YEMLQKMRCLGFPVNNGVRQ-----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + +     G P     ++     A     +V YY+ ++ +R  LP+DIDG+V KV+  
Sbjct: 255 KNIQEYFNDHGIPTVLPYKEDLLVVAKGPEEVVKYYHHIEKVRPKLPFDIDGVVIKVNSL 314

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+ LG  ARSPRW  + KF  +QA T + DI +Q+GRTG LTPVA ++PV +GG  +T
Sbjct: 315 RLQEDLGLVARSPRWATAAKFKPEQAQTTVEDIVVQVGRTGALTPVAIMKPVKVGGVTVT 374

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPF 428
           NATLHN+D I             +DIR+GD V+++RAG+VIP+VV+++  ++ P D  P+
Sbjct: 375 NATLHNQDEIT-----------RKDIRIGDTVIIQRAGDVIPEVVEVVNPDKRPADRLPY 423

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           S P  CP C S  V+      G++V   RC   L C A   E LKHFV+R A NI+ +G 
Sbjct: 424 SIPERCPACDSVAVK----AEGEVVT--RCVNPL-CIAVVKESLKHFVARRAMNIDKVGD 476

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++      D     R  +D + L + Q  S  +       GD S  N+  SI   +N 
Sbjct: 477 RLIETLV---DNKLLTRF-SDFYRLTKEQILSLERQ------GDKSADNIIKSIENSKNP 526

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFIF+LGIR VG +  + LA ++L+   F +               L++VP +G  +
Sbjct: 527 TLARFIFALGIRFVGEQTGKHLADHFLTIDKFLEASEE----------ELLQVPEIGAKV 576

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A++I ++  NP+ +  V+A++ E+   I    +     +     + TGTL  ++R  A++
Sbjct: 577 AKSIRDWTGNPKLVDEVKAMI-ELGVKIAGPVRAQEGSLSGMSFLITGTL-PVKRDDAKD 634

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            + + G  +   +S K + ++VGD+PGSK+EKAQ LGVKI++ E+ 
Sbjct: 635 LIERNGGKILGSVSSKLNYLVVGDDPGSKVEKAQGLGVKIISWEEL 680


>gi|313898151|ref|ZP_07831690.1| DNA ligase (NAD+) [Clostridium sp. HGF2]
 gi|312957179|gb|EFR38808.1| DNA ligase (NAD+) [Clostridium sp. HGF2]
          Length = 665

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 247/698 (35%), Positives = 378/698 (54%), Gaps = 52/698 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL S+   ++Y    YY   +P   D EYD   +   A+   FP   +  DPN    ++G
Sbjct: 8   ELRSILDRLAYE---YYVLDQPSKSDQEYDRYYQELVALEDEFP---QYRDPNSITQRVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G +  +  KV H    LSL   +N+EDL  F  R+          +  + +E KIDG  +
Sbjct: 62  GVVLDAFTKVEHKRTMLSLGNAFNLEDLHAFDERVREVVP-----NARYVVELKIDGLAM 116

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y  G+FV A  RGDG  GEDV+  ++ IP+IP  + L     +EVRGEVY+    F 
Sbjct: 117 SLIYRDGRFVQALTRGDGVVGEDVTHNVKTIPSIPMHIPLQGE--VEVRGEVYMPNASFQ 174

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E    G + +ANPRNAA+G +R+L+ +    R L+ F +      E       E L
Sbjct: 175 MLNEEREKNGEELFANPRNAAAGSIRQLDSSVAAKRKLDAFWYYFVNAQEYDIHSHEEAL 234

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           QKM  +   VN   +       +  +  E+   R+ LPY IDG+V KVD+   Q +LG  
Sbjct: 235 QKMSEMHLRVNPLRKVCERIDEVWQFIEEITEQRNDLPYAIDGMVIKVDDLDAQNRLGST 294

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            + PRW I++KF  ++  T+LLDI + +GRTG +TP A LEPV + G  ++ A LHNED 
Sbjct: 295 VKVPRWAIAYKFPAEEVITKLLDIVVTVGRTGRITPNAVLEPVRVAGTTVSAAQLHNEDM 354

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           IK            +DIR+ D V+V++AG++IP+VV  ++  R+     + FP+ CPIC 
Sbjct: 355 IK-----------EKDIRIHDDVVVRKAGDIIPEVVRPLLERRNDTQAVYHFPTHCPICG 403

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S +VR   P+     AAH C     C A+ +E + HF SRDA +I+ LG ++++FF K  
Sbjct: 404 SELVR--FPEE----AAHYCINQ-DCPARVVESMIHFASRDAMDIDTLGDKKVEFFHKQ- 455

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
              F +    DI+ L+  +Q    ++ ++ GF + SV  L D+I   +   LE  I+ LG
Sbjct: 456 --GF-LNTIEDIYCLKEHRQ----ELIDLEGFKEKSVDKLLDAIEDSKQNPLEDLIYGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IR VG + A+ LAK++LS       ++ ++A N ++   L+ +  +G I A++I  F+  
Sbjct: 509 IRQVGKKAAKVLAKHFLS-------MDALMAANEEE---LVAIKDIGQITAESITAFFHE 558

Query: 619 PRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           P+N+  + A LK     +    + +  S    K +V TGTL ++ R+ A+  +  LGA V
Sbjct: 559 PKNMELI-AHLKGYGLRMDTEAEQIQESSFSGKTIVLTGTLTQMTRNDAKALLESLGANV 617

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           S  +S+KTD++I G+  GSKL KA  LGV  M+E+ F+
Sbjct: 618 SGSVSKKTDLVIYGEAAGSKLTKANSLGVMTMDEDTFM 655


>gi|224543223|ref|ZP_03683762.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523856|gb|EEF92961.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM
           15897]
          Length = 664

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 248/700 (35%), Positives = 387/700 (55%), Gaps = 57/700 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL +L  + +Y    YY    P + D EYD L      I    P    ++ P+    ++G
Sbjct: 11  ELKALLNKYNYE---YYVQDNPTVSDQEYDRLMEELIRIEQVNPAWITTDSPS---QRVG 64

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE+     KVTH    +SL  I+N +++  F  R+       +     +  E K+DG  +
Sbjct: 65  GEVLEGFKKVTHQRMMMSLGDIFNEDEVYTFNDRVTDVIPNPE-----YICELKLDGLSV 119

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y+ G   Y A RG+G  GED++  ++ I +IP  +    P  +EVRGE+ + K    
Sbjct: 120 SLVYQDGVLQYGATRGNGTVGEDITHNVKTIRSIPLHIDFKGP--LEVRGEIIMPKKALE 177

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E    G   +AN RNAA+G +R+L+      R L+ F++ + + S++ A   YE L
Sbjct: 178 RLNEERTDAGLPLFANCRNAAAGSIRQLDSRVAAKRGLDAFLYHVPEASQLNASTHYECL 237

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +K++ LGF  N   R+  T   + +Y  E+  +R TLPYDIDG+V KV++   Q++LG  
Sbjct: 238 EKIKDLGFKTNPYTRKCKTIQEVWNYIEEVAKLRPTLPYDIDGVVIKVNDLDSQRKLGYT 297

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+ P+W I++KF  ++  T+L DI   IGRTG +TP A LEPV + G+L+  ATLHNED 
Sbjct: 298 AKVPKWAIAYKFPAEEVITKLKDIIFTIGRTGQITPNAVLEPVRVAGSLVQRATLHNED- 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
                     +R  +DIR+GD V+V++AG+VIP+VV  I   R     PF   + CP C 
Sbjct: 357 --------NCIR--KDIRIGDDVIVRKAGDVIPEVVSAIKERRTGHEIPFKMITVCPKCG 406

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S +VR  N       AA+ C     C ++++E+L HF SR+A NI+GLG + ++ F+   
Sbjct: 407 SLLVRKPNE------AAYYCVNE-ECDSKKIEKLIHFASREAMNIDGLGDKIIEQFY--- 456

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
           +  F   I  DI+ L   ++    +I +I GFG  S+  L ++I   +  SLE+ +F LG
Sbjct: 457 NLGFVTCI-EDIYHLGVHEK----EIMDIEGFGKKSMDKLLEAIENSKVNSLEKLLFGLG 511

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I+ +GA++A +LA ++ S            A  N +++ L  +  VGD IA ++  F +N
Sbjct: 512 IKGIGAKMADTLAYHFGSMD----------ALLNANYVQLTSIKDVGDTIASSLAAFKRN 561

Query: 619 PRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            RN+  + A LKE+  ++     R E +  +   +K +V TGTL  + R + ++Y+T  G
Sbjct: 562 ERNLELI-AHLKELGLNMDYLKVRQEGD--NPFRDKTVVITGTLTLMTRKQIKDYLTSQG 618

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           A V+  +S+KTD++IVG+NPGSK  KA  LG+ IMNE  F
Sbjct: 619 ANVTGSVSKKTDLVIVGENPGSKYTKAVDLGISIMNESAF 658


>gi|241889713|ref|ZP_04777011.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379]
 gi|241863335|gb|EER67719.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379]
          Length = 663

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 247/711 (34%), Positives = 393/711 (55%), Gaps = 57/711 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I++   +L SL  + SY    YY    P I D+EYD L ++ + +   +P+L      N 
Sbjct: 4   IQEEILKLVSLLNKYSYE---YYVEDNPQITDTEYDTLYKQLEKLEEKYPELILE---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +     K+TH IP LSL   ++ EDL  F  R+ +    ++   + +  E K
Sbjct: 58  PTQRVGDRVLDEFEKITHKIPMLSLSNTFSTEDLIDFDARVSKLVPSEN---VEYICELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+I Y+ GK V AA RGDG  GEDV+  I+ I +IP+VL        EVRGEVY+
Sbjct: 115 IDGLAISINYDNGKLVSAATRGDGTVGEDVTENIKTIFSIPKVLK--DKRSFEVRGEVYL 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251
            K  F  LN E        +ANPRNAA+G LR+L+ + IT  R L+ F++ +     I +
Sbjct: 173 PKKSFNILNKEREENNEVLFANPRNAAAGSLRQLD-SKITAKRRLSAFIYSIVGDDSIVS 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   L   +    PVN   +   +   ++ Y N     +  LPYDIDG+V KV+ + +
Sbjct: 232 --QENALNTAKEYELPVNPNFKLCKSIDEVIDYINYWTEHKQDLPYDIDGIVIKVNSYKV 289

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+Q+G   +SPRW  ++KF E++ +T+LLD+++ +GRTGI+TPVA L+P+ I G+ ++ A
Sbjct: 290 QEQIGFTQKSPRWATAYKFPEEELATKLLDVELSVGRTGIITPVAILDPIVISGSTVSKA 349

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN+D I  LD     M           V+VK+AGE+IPKVV ++   R   +  +  P
Sbjct: 350 SLHNKDIIDDLDIHIGDM-----------VVVKKAGEIIPKVVRVVKELRTEGSTKYQMP 398

Query: 432 SFCPIC-QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           S CP C Q   V+D +P T       RC     C  Q + ++ HF SRDA NIEGLG + 
Sbjct: 399 SNCPSCHQETYVKDNDPFT-------RCKNP-DCPDQNIRKIIHFASRDALNIEGLGDKV 450

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   +       +I    D+++L R +  +  ++      G+ SV NL ++I K +  SL
Sbjct: 451 VATLYDKGIICHTI----DLYSLDRDKLIALERM------GEKSVDNLLNAIEKSKESSL 500

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ I++LGI +VG +  + LA+ Y++  NF           N     LI +  VG I A+
Sbjct: 501 DKVIYALGILNVGKKAGKILAEKYVNLSNFM----------NATLEELINLDDVGQITAE 550

Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I+++  +  NI  +  L+   ++P    +E   ++    K +V TG L ++ R++A+E+
Sbjct: 551 SILDYLSDDNNIKFINDLINIGMNPQYEINEIKSNNIFSGKTVVLTGKLVELTRNEAKEF 610

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + + GA V+  ++ KTD++I G+  GSKL KA+QLG++++NEEQF  ++++
Sbjct: 611 LEKNGAKVTGSVTSKTDLVIAGEKAGSKLTKAEQLGIEVINEEQFANMVRE 661


>gi|167631047|ref|YP_001681546.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1]
 gi|254781344|sp|B0TDL0|DNLJ_HELMI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167593787|gb|ABZ85535.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1]
          Length = 675

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 253/710 (35%), Positives = 387/710 (54%), Gaps = 54/710 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + ++ L ++I  HD CYY    P I D+EYD L R    +  + P+L  ++ P+    
Sbjct: 13  AAQRIAELREQIRRHDYCYYVLDAPEISDAEYDRLMRELLDLEQSHPELVTADSPS---Q 69

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+   +   V+H +P LSL    + +DLR+F  R     +++ D  + + +EPKIDG
Sbjct: 70  RVGGQPLAAFRAVSHRVPLLSLANAVDDQDLREFDRRA----RERADRPLTYVVEPKIDG 125

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE+G+F+ AA RGDG  GED++  I+ +  +P  L  +I + +EVRGE Y+ K 
Sbjct: 126 LTVVLSYEEGRFIRAATRGDGLIGEDITENIKTVRAVPLRLKRDI-KSLEVRGEAYLPKA 184

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG-Q 254
            F  LN+E    G   +ANPRNAA+G LR+L+P    +R L  + + +         G Q
Sbjct: 185 AFARLNEEREEAGEAAFANPRNAAAGSLRQLDPKVTASRPLRAYFYNILHLEGADGVGEQ 244

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E LQ +  LG PVN   R   T   ++ Y       R  LPY+IDG+V KV+E      
Sbjct: 245 VEALQMLEDLGLPVNPERRYCRTIDDVIDYCRYWTEHRHDLPYEIDGMVVKVNELDQYPL 304

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LGE A+SPR+ I+ KF  +QA TR+ DI +++GRTG++TP A LEPV + G  ++ ATLH
Sbjct: 305 LGETAKSPRYAIAFKFPPEQAITRVRDITVKVGRTGVITPTAELEPVRLAGTTVSRATLH 364

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I+            RDI +GD V++++AG++IP+V+ ++  +R  + +PF  P  C
Sbjct: 365 NEDIIR-----------ERDIHIGDYVVIQKAGDIIPEVLSVLKEKRTGEERPFFMPQTC 413

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S V R       K  AA RCT  LAC AQ  E L HF SRDA NIEGLG   ++  
Sbjct: 414 PECHSPVSR------LKGEAAIRCT-SLACPAQAKEGLIHFASRDAMNIEGLGPAVVNLL 466

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++    A  +R PAD++ L   Q     ++      G  S  NL  +I   ++  L   I
Sbjct: 467 WE----AGLVRDPADLYDLTAEQVAPLERM------GKKSAANLIAAIENSKSRGLAALI 516

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA+++ S     +               L  V  +G  +A+++  
Sbjct: 517 FALGIRLVGQTAAKTLARHFGSMDQLMKATTE----------ELQAVSEIGPKMAESLQR 566

Query: 615 FYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  P N   ++ L    L+  +   G  +  V      K +V TGTL  + R +AQ  +
Sbjct: 567 WFAVPANRQMIDRLAEKGLQMETEKAG--DAGVPQTFAGKTVVLTGTLTTLDRREAQRLL 624

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + GA V++ +S+KT ++I G+  GSKLEKA++L + I++E  FL L+ +
Sbjct: 625 EERGAKVASSVSKKTSLVIAGEAAGSKLEKAKELNIPILSEADFLQLIDR 674


>gi|326693831|ref|ZP_08230836.1| DNA ligase, NAD-dependent [Leuconostoc argentinum KCTC 3773]
          Length = 681

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 249/724 (34%), Positives = 385/724 (53%), Gaps = 69/724 (9%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  PIE LS   A++E++ L+ +++ +   YY+   P++ D  YDAL  R  A+  AFP 
Sbjct: 4   EFTPIEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAFPQ 63

Query: 65  LARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
               + P      +GG +  S L KV H  P LSL  ++++E+L          W ++  
Sbjct: 64  FVTQDSPT---QNVGGALTKSGLAKVEHPAPMLSLGDVFSLEELAA--------WDERTT 112

Query: 124 NSIFF----TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
            S+ F     LE KIDG  + + Y  G+ V A+ RG+G  GEDV+  ++ I  IP+   L
Sbjct: 113 KSLGFQSPYNLELKIDGLAVALTYVDGRLVQASTRGNGTIGEDVTRNVKTIKAIPQ--QL 170

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLN 237
             P  IEVRGE+Y+ K  F ALN +  A G +P+ANPRNAA+G LR+L+   +T  R L+
Sbjct: 171 TEPLTIEVRGEIYMPKKSFAALNVQREADGLEPFANPRNAAAGSLRQLD-AQVTKQRELS 229

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            FV+   +   +    Q   L +   LG P +   +       I  +     + R TL Y
Sbjct: 230 AFVYYTAEPEVLGVTTQSGALARFAELGLPTDTHNQVIEKMADIADFIATYTAKRDTLAY 289

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            IDG+V KV+    Q +LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A 
Sbjct: 290 GIDGVVVKVNALDNQVELGNTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAV 349

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           ++PV + G  +  A+LHN DY++            +DIR+GD V + +AG++IP+V  +I
Sbjct: 350 MDPVQLAGTTVQRASLHNPDYLQ-----------QKDIRIGDTVTLHKAGDIIPEVGQVI 398

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           +++R  D+  +  P  CP C S +V      +G++  A RC     C+AQ  E L HF S
Sbjct: 399 LSQRPADSTAYPIPVVCPACGSELVH----ISGEV--ALRCINPF-CAAQIQEGLTHFAS 451

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R+A NI G+G + +D   K    A  I+  A I+ L   Q  S  K      F + S  N
Sbjct: 452 RNAMNIAGMGPRVIDQLLK----ANYIKDVASIYRLDMTQLLSLDK------FQEKSAAN 501

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +I + +  SLER +F LGIR VGA+ AR +A+ + +    A+     IA  +     
Sbjct: 502 LLAAITQSKENSLERLLFGLGIRLVGAKAARLVAEKFKTLSAIAEATVPEIASIDG---- 557

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKK 651
                 +G+ IAQ+IV+++ +P +    + LL E++ +      +   E + +S    KK
Sbjct: 558 ------IGEAIAQSIVQYFSHPES----QQLLIELTAAGVNQTYLSDVEVDENSFFYGKK 607

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +V TG L++  R  A +++   GA V+  +S KTD++I G + GSKLEKA  LGV +  E
Sbjct: 608 IVLTGKLEQSSRPAATKWLQDHGAQVAGSVSAKTDLLIAGADAGSKLEKATALGVLVWTE 667

Query: 712 EQFL 715
           ++FL
Sbjct: 668 QEFL 671


>gi|312898543|ref|ZP_07757933.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359]
 gi|310620462|gb|EFQ04032.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359]
          Length = 672

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 241/710 (33%), Positives = 373/710 (52%), Gaps = 46/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++A   L  L +++ ++   YY   KP I D +YD L R  + I  A P+   ++ P   
Sbjct: 4   DKAYARLLELREKLDFYSYQYYTLDKPTITDYDYDMLYRELETIEGAHPEWVTADSPT-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G +++    K TH  P LSL  ++N  +LR+F  R+     ++      + +E KI
Sbjct: 62  -QRVGHKISGGFNKYTHDRPMLSLGDVFNDNELREFDRRVRSDLGEQVPQ---YVVELKI 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + YE G FV    RGDG  GEDV+  +R I TIP  +  + P I E+RGEVY+ 
Sbjct: 118 DGLAINLIYENGMFVRGVTRGDGVVGEDVTNNVRTIKTIPLKIDSHSPHI-EIRGEVYMP 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
              F ALN +      +P+ANPRNAA+G LR+L+P     R L+FF + +G T  +    
Sbjct: 177 VRAFDALNIQRSEDELEPFANPRNAAAGSLRQLDPQITAQRNLSFFAYAIGGTVGMTIHS 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q E+L+ ++ L F VN   R  ++   ++++ +     R  LPY  DG+V KV+ F+ Q+
Sbjct: 237 QEELLEDLKKLRFHVNKEYRVFDSIEDVITFIHSWDERRDELPYATDGMVIKVNSFAQQE 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   + PRW I++KF  ++A T++  I + +GRTG+LTP A L PV + G  +  ATL
Sbjct: 297 LLGNTVKIPRWAIAYKFPPERAKTKVEGISVTVGRTGVLTPAADLTPVRLAGTTVKRATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNEDYIK            +DIR+GD V++++AGE+IP+VV  +V ER      F  P+ 
Sbjct: 357 HNEDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVGPVVKERTGQENVFVMPTH 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   VVR      G+  AA RC     C A   +++ HFVSR+A NI+GLG      
Sbjct: 406 CPGCGHEVVR----PDGE--AATRCVNP-ECPAILSQKVAHFVSRNAMNIDGLGDAITAQ 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       I   +DI+ L++    S      + GF D S  NL  ++   + + L R 
Sbjct: 459 LLQQG----LIHRVSDIYDLKKEDLIS------LEGFADKSADNLLKAVEDSKKVGLARV 508

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VGA+ AR LA+++ S +  A                L  +  +G  IA+++ 
Sbjct: 509 LFALGIRFVGAKAARILAEHFGSVEALAAASTE----------ELTDIDEIGPRIAESVH 558

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            + +       V AL         +  +   S    + +V TG L+ + R +A+E V   
Sbjct: 559 TWIRTDEARKLVAALEAAGVDMTAQKRQTKGSAFRGEIVVLTGKLETMTRKEAEEAVVAG 618

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           G   +  ++ KT +++ G +PGSK EKA+ LG  I++EE+F+  +Q+  T
Sbjct: 619 GGKCTGSVTGKTTLVVAGADPGSKYEKARSLGTPIISEEEFIAWIQRDKT 668


>gi|194466912|ref|ZP_03072899.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23]
 gi|194453948|gb|EDX42845.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23]
          Length = 680

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 246/721 (34%), Positives = 396/721 (54%), Gaps = 56/721 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M ++Q  P++ L++++A+ E+  L  +++     YY+   P + D  YD   +R   +  
Sbjct: 1   MSEKQ-TPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L  ++ P     ++GG     L KV H IP LS+  +++IE+L  F  R     Q+
Sbjct: 60  QFPQLVSADSPT---QRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQR----QQE 112

Query: 121 KDDNSIF--FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
             D  +   + LE KIDG  +++ YE GK V  + RG+G  GEDV+A +R I ++P    
Sbjct: 113 NRDVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGAIGEDVTANVRTIKSVP--AE 170

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLN 237
           L  P  IEVRGE Y+ K  F  LN +  A G   +ANPRNAA+G LR+L+P     R L+
Sbjct: 171 LPEPLSIEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELD 230

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F++ + +  ++  K Q E L +MR LGF VN   +  +T   I  Y  E  + R  L Y
Sbjct: 231 TFMYYVPEYQKLGVKTQAEALDRMRELGFNVNPNNQVVHTREEIEKYIEEYTAQRDKLTY 290

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            IDG+V KV++   +  LG   + PRW I++KF  ++ +T + DI   +GRTG +TP A 
Sbjct: 291 GIDGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAV 350

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           ++PV + G  ++ A+LHN DY+             +DIR+GD V + +AG++IP++  + 
Sbjct: 351 MDPVQLAGTTVSRASLHNPDYLH-----------EKDIRIGDTVYLHKAGDIIPEISKVD 399

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R  D+  +  P+ CP+C S +V       G++  A RC   + C AQ  E L HF S
Sbjct: 400 LTKRPADSVEYEIPTKCPVCGSELVH----LDGEV--ALRCINPM-CPAQIKEGLAHFAS 452

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R+A NI+GLG + ++  +  E     I   A ++ L   Q  +  K      FG+ S  N
Sbjct: 453 RNAMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLTLDK------FGEKSTAN 502

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  SI+  RN S+ER +F LGIRHVGA+ AR + +++        ++++++  + D+   
Sbjct: 503 LLTSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHF-------GDLDSLMKADADE--- 552

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLV 653
           +  +  +G  I ++IV ++ N + +  ++  L+EV  +      R   N  SE   +++V
Sbjct: 553 ISAISGIGPTIGESIVTYFANQQVVKLIDE-LREVGVNFAYLGSRSNANPDSEWNGRRVV 611

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG L ++ R +A+ ++   GA V+  +S+KTDI+I G + GSKL KAQ LG+ + NE+Q
Sbjct: 612 LTGKLTEMTRGEAKSWLENHGAKVTGSVSKKTDIVIAGADAGSKLTKAQDLGIDVWNEQQ 671

Query: 714 F 714
           F
Sbjct: 672 F 672


>gi|21673293|ref|NP_661358.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS]
 gi|81791793|sp|Q8KF74|DNLJ_CHLTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21646383|gb|AAM71700.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS]
          Length = 674

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 235/722 (32%), Positives = 385/722 (53%), Gaps = 71/722 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A++E+  L  EI  H+  YY  +KP I D E+D L +R   +   FP+L     P+ P 
Sbjct: 5   KAQQEIGKLRAEIERHNRLYYLEAKPEISDFEFDKLLKRLIMLEKEFPELV---TPDSPS 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +      V H  P LSL   ++I ++  F  R+ +    +   +  +  E K D
Sbjct: 62  QRVGGGITKEFPTVVHRDPMLSLSNTYSIAEVADFCNRVEKLVAAEGGGTPEYVAELKYD 121

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----------I 185
           G  I++ Y  G  V  + RGDG  G++++A +R IP+IP  L L +P++          I
Sbjct: 122 GVAISLLYRDGLLVCGSTRGDGRQGDEITANLRTIPSIP--LRLEMPDLPLFGTALSGEI 179

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
           EVRGEVY+ K+DF  LN+E     R  +ANPRNA +G L+  +  ++ R    FV    K
Sbjct: 180 EVRGEVYMRKDDFERLNEERPEEER--FANPRNATAGTLKLQDSAEVARRRMSFVAYYLK 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             +  A    + L++++ +GF      +       I  +  E    R TLPY+ DG+V K
Sbjct: 238 GYDGEAPTHLKRLEQLKSMGFMTGAAAKLCKGMDEIADFIAEWSEKRWTLPYETDGVVLK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           ++E SL ++LG  A+SPRW I++K+  +QA T L  +  Q+GR G +TPVA L+P  + G
Sbjct: 298 LNEVSLWERLGATAKSPRWAIAYKYPAQQAKTVLQGVVFQVGRLGTITPVAELKPTRLAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           ++++ +TLHN D IK L            +R+GD V+++++GEVIPKVV ++++ER  + 
Sbjct: 358 SIVSRSTLHNFDEIKRL-----------GVRIGDHVMIEKSGEVIPKVVSVVLDERPAET 406

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                PS CP+C +R+ R      G++     C     C AQ+  R+ HF SR+A +I+ 
Sbjct: 407 AEIEVPSECPVCGTRLER----PEGEV--NWYCPNEEGCPAQKRGRILHFASRNALDIQN 460

Query: 486 LGK----QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           LG+    Q +D    S+          D+++L + Q     ++         S  N+ D+
Sbjct: 461 LGESLVTQLVDRGLVSD--------AGDLYSLTQEQLAGLDRM------AAKSAQNVLDA 506

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + K +  S  R +F+LGIRHVGA  AR LA    S     +           D  +L  V
Sbjct: 507 LEKSKKQSYARLLFALGIRHVGAATARELAHACPSIDRLREM----------DEEALAAV 556

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTG 656
           P +G +IA +I +F+  P     V+A+L++++ +      G  +  V++  E + ++FTG
Sbjct: 557 PDIGPVIAASIRDFFAKP----WVQAMLQKLAEAGLPMQAGEEKALVNNNFEGQSVIFTG 612

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L++  R +A+E V + G  + + +S+KT +++ G   GSKLEKA +LGVK+++E++F  
Sbjct: 613 ALERHVRQEAEEMVRERGGRIVSSVSKKTTLVVAGKEAGSKLEKAIKLGVKVIDEDEFER 672

Query: 717 LL 718
           +L
Sbjct: 673 ML 674


>gi|300704237|ref|YP_003745840.1| DNA ligase [Ralstonia solanacearum CFBP2957]
 gi|299071901|emb|CBJ43230.1| DNA ligase [Ralstonia solanacearum CFBP2957]
          Length = 813

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 231/636 (36%), Positives = 340/636 (53%), Gaps = 61/636 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY   +P + D+EYD L R  +A+    P L     P+ P  ++GG +      V H +P
Sbjct: 31  YYVLDQPSVPDAEYDRLYRELEALEAEHPAL---RTPDSPTLRVGGAVLPEFAPVRHVVP 87

Query: 95  TLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
            LS+  E     +    F   + R     + D  + +  E K DG  I +RYE+G  V A
Sbjct: 88  MLSIRTETDTTADGALAFDASVRRELGLAESDPPVEYAAELKFDGLAINLRYEQGFLVQA 147

Query: 152 ALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
           A RGDG +GEDV+  IR I  IP   R +   +P+++EVRGEVY+ ++DF  LN      
Sbjct: 148 ATRGDGTTGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLNARQRER 207

Query: 209 GRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE--MLQKMRCLG 265
           G K + NPRN A+G +R+L+P     R L+FF +GLG+ +   A  +    ML  +  LG
Sbjct: 208 GEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSAMPETHSGMLDALVALG 267

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           FPV+          G+V ++  + + R +LP+DIDG+VYKV+  +LQ++LG R R PRW 
Sbjct: 268 FPVSRERAAVKGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNSLALQRELGFRTREPRWA 327

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNATLHNED ++     
Sbjct: 328 VAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEVR----- 382

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPDAQPFSF 430
                  +D+RVGD V+V+RAG+VIP+VV +++  R                P   PF  
Sbjct: 383 ------RKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNAAQQPKHPPFEL 436

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S VVR+     G+ VA  RC+GGL CSAQ+ E ++HF  R   +IEGLG++ 
Sbjct: 437 PKSCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERY 490

Query: 491 LDFFFKSE---DPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDVSVT---NLYDSIN 543
           +D   + E     A   R+  D F  ++RR           +  G ++     NL   I 
Sbjct: 491 IDNLVELEYVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAENLLAGIQ 550

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +   L RF+F+LGIRHVG   A++LA +  S     +    +          L+ +P 
Sbjct: 551 ASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL----------LLTLPD 600

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
           VG  +A+AI +F+  P+N  A++ALL       G H
Sbjct: 601 VGATVAEAIADFFDEPKNQQALDALLAAGVAPQGEH 636



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 46/73 (63%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +V TGTL  + R  A+  +   GA VS  +S+KTD ++ G+  GSKL KA +LGV
Sbjct: 734 LSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSKKTDYVVAGEEAGSKLAKAAELGV 793

Query: 707 KIMNEEQFLFLLQ 719
           K+++E   L LLQ
Sbjct: 794 KVLDEAGMLALLQ 806


>gi|46199040|ref|YP_004707.1| NAD-dependent DNA ligase [Thermus thermophilus HB27]
 gi|81405933|sp|Q72JN8|DNLJ_THET2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46196664|gb|AAS81080.1| NAD-dependent DNA ligase [Thermus thermophilus HB27]
          Length = 676

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/720 (35%), Positives = 398/720 (55%), Gaps = 67/720 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK ++ L   I YH+  YY  + P I D+EYD L R    +   FP+L   + P
Sbjct: 1   MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEL---KSP 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G     + F+ V H     SL+  +N ++L+ F  RI R   +  +    +T+
Sbjct: 58  DSPTEQVGARPLEATFRPVRHPTRMYSLDNAFNFDELKAFEERIERALGR--EGPFAYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE G  VY A RGDG  GE+V+  +  IPTIPR L   +PE +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEDGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLK-GVPERLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247
           VY+    FL LN+E+   G + + NPRNAA+G LR+ +P    +      F+  GLG   
Sbjct: 175 VYMPVEAFLRLNEELEERGERIFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLG-LE 233

Query: 248 EIFAKG---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           E+  +G   Q+ +L  ++  GFPV +G  +A    G+ + Y +    R  LP++ DG+V 
Sbjct: 234 EVEREGVATQFALLHWLKEKGFPVEHGYARAVGAEGVEAVYQDWLKKRRALPFEADGVVV 293

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+DE +L ++LG  AR+PR+ I++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV + 
Sbjct: 294 KLDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFLE 353

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  +
Sbjct: 354 GSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGE 402

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P  +P  CP C  R++     K GK+   HRC   L C A++ E ++HF SR A +I+
Sbjct: 403 ERPIRWPETCPECGHRLL-----KEGKV---HRCPNPL-CPAKRFEAIRHFASRKAMDIQ 453

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDS 541
           GLG++ ++   +       ++  AD++ L++         E+++G    G+ S  NL   
Sbjct: 454 GLGEKLIERLLEK----GLVKDVADLYRLRK---------EDLVGLERMGEKSAQNLLRQ 500

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I + +   LER +++LG+  VG  +AR          N A    N+          L+ V
Sbjct: 501 IEESKRRGLERLLYALGLPGVGEVLAR----------NLAARFGNMDRLLEASLEELLEV 550

Query: 602 PLVGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
             VG++ A+AI+E  ++P  R++      LKE    +   EK   + ++    V TG L 
Sbjct: 551 EEVGELTARAILETLKDPAFRDLV---RRLKEAGVEMEAKEKGGEA-LKGLTFVITGELS 606

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  R + +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  + EE+   LL+
Sbjct: 607 R-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLE 665


>gi|193212122|ref|YP_001998075.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327]
 gi|254781284|sp|B3QLI5|DNLJ_CHLP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193085599|gb|ACF10875.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327]
          Length = 674

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 232/716 (32%), Positives = 379/716 (52%), Gaps = 59/716 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A++E+  L  EI  H+  YY  +KP I D E+D L  R  A+   FP+L     P+ P 
Sbjct: 5   KAQQEIGKLRAEIERHNRLYYLEAKPEISDFEFDKLLERLIALETEFPELV---TPDSPS 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +      V H  P LSL   ++I ++  F TR+ +    +   +  +  E K D
Sbjct: 62  QRVGGGITKEFPTVIHREPMLSLSNTYSIGEVSDFCTRVEKLVAAEGGGTPEYVAELKYD 121

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--------RVLSLNIPEIIEV 187
           G  I++ Y  G  V  + RGDG  G++++A ++ IP+IP         +    +   +EV
Sbjct: 122 GVAISLFYRDGLLVRGSTRGDGRQGDEITANLKTIPSIPLRLQSAGGSLFDAAVNGEVEV 181

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           RGEVY+ K+DF  LN+E     R  +ANPRNA +G L+  +  ++ R    FV    K  
Sbjct: 182 RGEVYMRKDDFERLNEERPEEER--FANPRNATAGTLKLQDSAEVARRRMSFVAYYLKGH 239

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A      L++++C+GF      R       I ++  E    R TLPY+ DG+V K++
Sbjct: 240 DGEAPTHLRRLEQLKCMGFMTGAAARLCKGMDEIANFIGEWSEKRWTLPYETDGVVLKLN 299

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E  L  +LG  A+SPRW I++K+  +QA T L  +  Q+GR G +TPVA L+P  + G+ 
Sbjct: 300 EVGLWDRLGATAKSPRWAIAYKYPAQQAKTVLQGVVFQVGRLGTITPVAELKPTKLAGST 359

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ +TLHN D I+ L            +R+GD V+++++GEVIPKVV ++++ER  +   
Sbjct: 360 VSRSTLHNFDEIERL-----------GVRIGDHVMIEKSGEVIPKVVSVVLDERPAETAE 408

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              PS CP+C +++ R      G++  +  C     C AQ+  R+ HF SR+A +I+ LG
Sbjct: 409 IEAPSECPVCGTKLER----HEGEV--SWYCPNEEGCPAQKRGRILHFASRNALDIQNLG 462

Query: 488 K----QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +    Q ++  F S+          D+++L + Q  S  ++         S  N+ D++ 
Sbjct: 463 ESLVSQLVERGFVSD--------AGDLYSLTQEQLASLDRM------AAKSAQNVLDALE 508

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +  S  R +F+LGIRHVGA  AR LA    S       I+ +     ++   L  VP 
Sbjct: 509 KSKKQSYARLLFALGIRHVGAATARELAHACPS-------IDRLREMGEEE---LAAVPD 558

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662
           +G +IA +I +F+  P     +E L     P     EK  V++  E + ++FTG L++  
Sbjct: 559 IGPVIAASIRDFFAKPWVAAMLEKLAAAGLPMQAGEEKALVNTNFEGQSVIFTGGLERHV 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+E V + G  + + +S+KT +++ G   GSKLEKA +LGV++++E++F  +L
Sbjct: 619 RQQAEEMVRERGGKIVSSVSKKTTLVVAGKEAGSKLEKAMKLGVRVIDEDEFERML 674


>gi|161598439|ref|YP_120478.2| NAD-dependent DNA ligase LigA [Nocardia farcinica IFM 10152]
          Length = 710

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/706 (33%), Positives = 368/706 (52%), Gaps = 50/706 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +E+  H   YY    PII D E+DAL R    +    PDL     P+ P   +GG   
Sbjct: 33  LAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDL---RTPDSPTQLVGGGFA 89

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                V H    LSL+ ++++++LR +  R+    + +    + +  E KIDG  + + Y
Sbjct: 90  TDFTPVDHLERMLSLDNVFDVDELRAWAARV----EAETGPDLHYLCEVKIDGVALNLVY 145

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKNDFL 199
           E+GK V AA RGDG +GEDV+   R I  +P  LS      +PE++EVRGEVY+   DF 
Sbjct: 146 ERGKLVRAATRGDGRTGEDVTLNARTIEDVPGELSAGGEFPVPELLEVRGEVYLRLADFE 205

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
           ALN  ++A G+ PYANPRN A+G LR+ +P     R L    HGLG+        Q+E  
Sbjct: 206 ALNAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICHGLGRIEGYTPASQFEAY 265

Query: 259 QKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + +   G PV+   R+      +   V+Y+ E    R  + ++IDG V KVDE SLQ++L
Sbjct: 266 RALSAWGLPVSEHTRRVRGIDAVIERVAYWGEH---RHDIEHEIDGQVIKVDETSLQRRL 322

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I++K+  ++A+T+L  I++ +GRTG +TP A +EPV I G+ +  ATLHN
Sbjct: 323 GATSRAPRWAIAYKYPPEEATTKLRAIEVNVGRTGRVTPFAVMEPVVIAGSTVAMATLHN 382

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              +K         R G  + +GD V +++AG+VIP+V+  +V+ R    + F  P+ CP
Sbjct: 383 ASEVK---------RKG--VLIGDTVTIRKAGDVIPEVLGPVVDARTGAEREFVMPTHCP 431

Query: 436 ICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
            C +    +L P K G   A  RC    +C AQ  ER+ H   R AF+IE LG +     
Sbjct: 432 ECGT----ELAPEKEGD--ADIRCPNQRSCPAQLRERVYHVAGRSAFDIEALGYEAAIDL 485

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +S     +I    D+F L   +  +T+   N  G    +   L ++++  ++  L R +
Sbjct: 486 LQS----GAIGDEGDLFDLDEARLLTTSLFTNKNGSLSANGKRLLENLDAAKDRPLWRVL 541

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             L IRHVG   AR+LA  + S +   Q   + +A  +           VG  IA A+ E
Sbjct: 542 VGLSIRHVGPTAARALAAEFGSMERIEQASVDELAATDG----------VGPTIAAAVAE 591

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++    +   V          +   ++++   +E   +V TG+LQ   R  A+E +   G
Sbjct: 592 WFTVDWHRAIVAKWRAAGVRMVDERDESIERTLEGLSIVVTGSLQGFSRDGAKEAILARG 651

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              +  +S+KT  ++VGD PG+K  KA++LGV I++EE F+ LL +
Sbjct: 652 GKAAGSVSKKTAFVVVGDAPGAKAAKAEELGVPILDEEGFVRLLAE 697


>gi|116626792|ref|YP_828948.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122251346|sp|Q01NV7|DNLJ_SOLUE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116229954|gb|ABJ88663.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 662

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/704 (33%), Positives = 370/704 (52%), Gaps = 54/704 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+  L +++ +H+  YY   KP I D+EYDAL  R   +    PDL     P+ P  ++G
Sbjct: 7   EIEKLREQLHHHEHLYYVLDKPEITDAEYDALMHRLQELETKHPDLL---TPDSPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+      KV HS P LSL+   N  +LR F  R+          +  +  E K+DG  +
Sbjct: 64  GKPREGFIKVRHSSPMLSLDNALNEAELRDFDRRVRDLLGGA---AFRYVTELKMDGLSM 120

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
              Y  GKF  A  RGDG +GEDV+   R I ++P  +   +P   EVRGE  +S+  F 
Sbjct: 121 AAHYNNGKFTEAVTRGDGTTGEDVTENARTIRSLPLRVKTKLP-AFEVRGETVMSRRAFE 179

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN +    G   +ANPRNAA+G LR+L P    +R L ++ + L        +  +E L
Sbjct: 180 RLNTDRDEKGLSRFANPRNAAAGSLRQLEPQVTASRRLEYYTYFLLTEGRPAYESHWEAL 239

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             ++ +GF VN+  R  ++   ++++    +  R  LPY+IDG+V KVD    Q++LG  
Sbjct: 240 TALKQMGFKVNDKSRPCDSIDEVLAFCAHWEGERENLPYEIDGVVVKVDSVEQQRRLGFT 299

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A++PRW I++K+  +QA+T +  ID+Q+GRTG LTPVA L+PV +GG  ++ ATLHNED 
Sbjct: 300 AKAPRWAIAYKYPARQATTMIEGIDVQVGRTGALTPVANLKPVVVGGVTVSRATLHNEDE 359

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+ L            +++GD V+V+R+G+VIPKVV   V+ +    +PF  PS CP+C 
Sbjct: 360 IERL-----------GLQIGDEVVVERSGDVIPKVVR--VSSQGSYRKPFKMPSHCPVCN 406

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           +++VR+         AA RC     C A+  E + HF SR   NI+G+G   +D     E
Sbjct: 407 TKIVREEGE------AASRCINA-NCPARLKESILHFASRGVMNIDGMGDALVDQLVDRE 459

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIF 555
                +   AD++ L         KIE+++     G  S  N+  +I+K R  SL R + 
Sbjct: 460 ----IVHNIADLYDL---------KIEDLMDLDRMGVKSAGNVIRNIDKSRRNSLPRVLT 506

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A  LA+ + S     +   + +    +          VG  +A+A+V+F
Sbjct: 507 ALGIRFVGERTAVFLAQAFGSMDAIERATVDELQQAEE----------VGPKVAEAVVQF 556

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +  P N   V+ L K        + +     +     V TGTL  + R +A++ + Q G 
Sbjct: 557 FSIPDNRELVDRLRKADLQFTYAYSRPKGGPLTGSTFVLTGTLPNLSREEAKQLIEQAGG 616

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V++ +S+KT  ++ G++ GSKL+KA QL ++++ E +   +L+
Sbjct: 617 KVASAVSKKTSYVVAGEDAGSKLDKAHQLNIRVITEAELHAMLR 660


>gi|81429164|ref|YP_396165.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K]
 gi|123755813|sp|Q38VC5|DNLJ_LACSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78610807|emb|CAI55858.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K]
          Length = 677

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/713 (33%), Positives = 385/713 (53%), Gaps = 61/713 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E  +  +A      L  +++ +   YY    P++ D  YD L R  + +  AFP +  +
Sbjct: 7   VEDYTQSEAASLAQQLRDQLADYSQAYYTQDAPLVEDHVYDELYRDLEQLEAAFPVIVTN 66

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P     K+GG++     KVTH IP LS+  +++  +L  F  R+    +K     I +
Sbjct: 67  DSPT---QKVGGQVLPGFTKVTHEIPMLSMGDVFSEAELAAFDQRL----RKNTATEIEY 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  I + YEKG+FV  A RG+G  GED++  ++ I  IP+ L+   P  IEVR
Sbjct: 120 NVELKIDGLAIDLIYEKGRFVRGATRGNGTIGEDITQNLKTIKAIPQKLTR--PVSIEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GE Y+ K  F  LN +  A G+ P+ANPRNAA+G LR+L+      R L+ F++ +    
Sbjct: 178 GECYMPKAAFADLNQKREAEGQAPFANPRNAAAGSLRQLDAKVAAARQLSAFIYTIVTFD 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           ++ A  Q E L  +  LGF VN           + ++  + +  R+ L Y IDG+V KV+
Sbjct: 238 DVQATTQSEALHVLAELGFNVNPTSVVCQNMAEVQAFIEQYQGTRNDLAYGIDGVVLKVN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ+QLG   + PRW I++KF  ++A T + +I+  +GRTG++TP A ++PV + G  
Sbjct: 298 DLALQRQLGNTVKVPRWEIAYKFPPEEAETVIREIEWTVGRTGVVTPTAVMDPVQLAGTT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN D ++            +D+R+ D VL+ +AG++IP++  +++ +R  D+Q 
Sbjct: 358 VARASLHNADMLR-----------DKDVRLLDTVLLHKAGDIIPEISQVVLAKRPSDSQA 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C   +V  L+ +      A RC   + C AQ  E+L HF SR+A NI+GLG
Sbjct: 407 YGIPTTCPSCGHDLVH-LDEEV-----ALRCINPM-CPAQMKEQLTHFASRNAMNIDGLG 459

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +    + E     I   AD++ L      +   +  +  F + S+ NL ++I+  R 
Sbjct: 460 PRIITQLLEKE----LIHDVADLYRL------TADDLAQLDKFKEKSINNLLNAIDASRQ 509

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLER +F LGIRHVGA+ AR LA+++           N+ A    D  ++I V  +G I
Sbjct: 510 NSLERLLFGLGIRHVGAKAARLLAEHF----------QNLAALMASDQETIITVDTIGTI 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--------SIGRHEKNVS-SEIENKKLVFTGTL 658
           IA ++V ++ + +    V+ L+ E+           + + +   S S    K +V TG L
Sbjct: 560 IADSLVTYFADSQ----VQTLMAELEAVGVNLTYTGVTKAQAATSDSYFNGKTVVLTGKL 615

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           ++  R + ++ +   GA V+  +S+KTD +I G + GSKLEKAQ L + I+NE
Sbjct: 616 EQYTRGELKQLLEDNGAKVTGSVSKKTDALIAGQDAGSKLEKAQSLAIPIINE 668


>gi|104780921|ref|YP_607419.1| NAD-dependent DNA ligase LigA [Pseudomonas entomophila L48]
 gi|122985912|sp|Q1ICK0|DNLJ_PSEE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|95109908|emb|CAK14613.1| NAD-dependent DNA ligase [Pseudomonas entomophila L48]
          Length = 784

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/627 (34%), Positives = 348/627 (55%), Gaps = 48/627 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   + +L  E+  H+  YY   +P + D+EYD L     A+    P L  ++ P     
Sbjct: 3   AESRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPQLVTADSPT---Q 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130
           ++GG    +  +V H +P LSL   +  +DLR F  R+         +      ++ ++ 
Sbjct: 60  RVGGAALAAFSQVRHEVPMLSLGNAFEEDDLRDFDRRVVEGLDLPGGDLFAAQAAVDYSC 119

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           EPK+DG  +++ Y  G+ V  A RGDG +GED+S  +R +  IP ++     P ++EVRG
Sbjct: 120 EPKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISTNVRTVRNIPLKLQGEGWPAVLEVRG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+SK  F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE
Sbjct: 180 EVYMSKAGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSE 239

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            F      +L+K++  G P++  +R A      ++YY ++ + R+ LPY+IDG+V+KV+ 
Sbjct: 240 PFGDSHIGILEKLKTWGLPISRELRHAAGIEECLAYYRDIGARRNDLPYEIDGVVFKVNS 299

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q++LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G ++
Sbjct: 300 LASQRELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVMV 359

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            +R+GD V+++RAG+VIP+V+ ++++ R  +A+P 
Sbjct: 360 SNATLHNMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLDRRPENARPV 408

Query: 429 SFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             P+ CP+C S+V R   +    GK      A +RC G L+C+AQ  + + H+VSR A +
Sbjct: 409 EVPTECPVCGSQVERTQLVKRSKGKETISEGAVYRCVGRLSCAAQLKQAIIHYVSRRAMD 468

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG++ ++      D    IR PAD++ L+  Q      +  + GF +VS   L ++I
Sbjct: 469 IDGLGEKSVEQLV---DEGL-IRSPADLYKLEFEQ------VVVLEGFAEVSSRKLLEAI 518

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +  SL RFI++LGI  VG E A+ LA+   S       +  ++ +          +P
Sbjct: 519 EASKRPSLARFIYALGIPDVGEETAKVLARSLGSLARVQVALPQVLTY----------LP 568

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALL 629
            +G  +A  I  F+++  N   +  LL
Sbjct: 569 DIGLEVAHEIHNFFEDTHNREVIAQLL 595



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 4/121 (3%)

Query: 609 AQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
           A+ + EF+++  N     A+EA L +        +++     +  +  V TGTL+++ R 
Sbjct: 664 AEGVREFFRDEANQLLARAIEAQLLDFGMHWSCEKRSAEGLPLAGQTWVLTGTLERMSRD 723

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            A+E + +LGA V+  +S KT  ++ G   GSKL KA +LGVK+++EEQF+  + +   T
Sbjct: 724 VAKEQLERLGAKVAGSVSGKTHCVVAGPGAGSKLAKANELGVKVLDEEQFVAFMAEQGIT 783

Query: 725 L 725
           L
Sbjct: 784 L 784


>gi|81373659|sp|Q5YRS7|DNLJ2_NOCFA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|54017744|dbj|BAD59114.1| putative DNA ligase [Nocardia farcinica IFM 10152]
          Length = 683

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/706 (33%), Positives = 368/706 (52%), Gaps = 50/706 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +E+  H   YY    PII D E+DAL R    +    PDL     P+ P   +GG   
Sbjct: 6   LAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDL---RTPDSPTQLVGGGFA 62

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                V H    LSL+ ++++++LR +  R+    + +    + +  E KIDG  + + Y
Sbjct: 63  TDFTPVDHLERMLSLDNVFDVDELRAWAARV----EAETGPDLHYLCEVKIDGVALNLVY 118

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKNDFL 199
           E+GK V AA RGDG +GEDV+   R I  +P  LS      +PE++EVRGEVY+   DF 
Sbjct: 119 ERGKLVRAATRGDGRTGEDVTLNARTIEDVPGELSAGGEFPVPELLEVRGEVYLRLADFE 178

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
           ALN  ++A G+ PYANPRN A+G LR+ +P     R L    HGLG+        Q+E  
Sbjct: 179 ALNAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICHGLGRIEGYTPASQFEAY 238

Query: 259 QKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + +   G PV+   R+      +   V+Y+ E    R  + ++IDG V KVDE SLQ++L
Sbjct: 239 RALSAWGLPVSEHTRRVRGIDAVIERVAYWGEH---RHDIEHEIDGQVIKVDETSLQRRL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I++K+  ++A+T+L  I++ +GRTG +TP A +EPV I G+ +  ATLHN
Sbjct: 296 GATSRAPRWAIAYKYPPEEATTKLRAIEVNVGRTGRVTPFAVMEPVVIAGSTVAMATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              +K         R G  + +GD V +++AG+VIP+V+  +V+ R    + F  P+ CP
Sbjct: 356 ASEVK---------RKG--VLIGDTVTIRKAGDVIPEVLGPVVDARTGAEREFVMPTHCP 404

Query: 436 ICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
            C +    +L P K G   A  RC    +C AQ  ER+ H   R AF+IE LG +     
Sbjct: 405 ECGT----ELAPEKEGD--ADIRCPNQRSCPAQLRERVYHVAGRSAFDIEALGYEAAIDL 458

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +S     +I    D+F L   +  +T+   N  G    +   L ++++  ++  L R +
Sbjct: 459 LQS----GAIGDEGDLFDLDEARLLTTSLFTNKNGSLSANGKRLLENLDAAKDRPLWRVL 514

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             L IRHVG   AR+LA  + S +   Q   + +A  +           VG  IA A+ E
Sbjct: 515 VGLSIRHVGPTAARALAAEFGSMERIEQASVDELAATDG----------VGPTIAAAVAE 564

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++    +   V          +   ++++   +E   +V TG+LQ   R  A+E +   G
Sbjct: 565 WFTVDWHRAIVAKWRAAGVRMVDERDESIERTLEGLSIVVTGSLQGFSRDGAKEAILARG 624

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              +  +S+KT  ++VGD PG+K  KA++LGV I++EE F+ LL +
Sbjct: 625 GKAAGSVSKKTAFVVVGDAPGAKAAKAEELGVPILDEEGFVRLLAE 670


>gi|218885555|ref|YP_002434876.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|254781315|sp|B8DJT6|DNLJ_DESVM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218756509|gb|ACL07408.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 808

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 247/733 (33%), Positives = 386/733 (52%), Gaps = 86/733 (11%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L  +++YH   YY      I D+EYDAL R    I   +P L     P+ P +++G  +
Sbjct: 39  ALRDQLNYHSHRYYVLDDAEISDAEYDALFRELQDIEAEWPSL---RTPDSPTHRVGDTV 95

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
             +L    H++   SL+  ++ E+   FI R+ R    + D    F  +PK+DG  + + 
Sbjct: 96  VAALETQAHTLRMYSLDNAFSAEEWDGFIQRMLR---AEPDAPTAFWCDPKMDGLALEVI 152

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVYISKNDFLA 200
           YE G F  A  RGDG  GE V+  +R +  +P  L    P    +EVRGEV I++ +F A
Sbjct: 153 YENGVFTTALTRGDGEKGEIVTTAMRTVRNLPLRLHGEGPHPARLEVRGEVVITRAEFDA 212

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK------TSEIFAKG 253
           LN      G K +ANPRNAA+G +R+L+ +    R L F  +G+G+      TS+  A  
Sbjct: 213 LNAARRGAGEKLFANPRNAAAGSVRQLDASVTAGRPLRFLAYGVGQVVWPAETSDGAASA 272

Query: 254 ----------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                       +++  +   GF      R+  T   +++YY ++   RS LP+DIDG+V
Sbjct: 273 AQGPEARWATHGQVMAALADYGFGTPPDARRCETPAQVMAYYEDLGRRRSELPFDIDGVV 332

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+D+ S Q  LG  AR+PRW I+ KF   QA+TRL  I IQ+GRTG+LTPVA L PV +
Sbjct: 333 AKLDDLSAQAALGYTARAPRWAIALKFPAHQATTRLEHIAIQVGRTGVLTPVAELAPVAV 392

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++ ATLHNED I+            +D+RVGD V+V+RAG+VIP+VV  +V++R  
Sbjct: 393 GGVTVSRATLHNEDEIR-----------AKDLRVGDMVVVQRAGDVIPEVVRPLVDQRPA 441

Query: 424 DAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              P F FP+ CP+C + V R+         AA RC   + C A   + + HFVS+   +
Sbjct: 442 SGLPEFEFPAECPVCHTPVRREPG------EAAWRCV-NVGCPAVVRQSIIHFVSKAGLD 494

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-----QQTSTTKIENILGFGDVSVTN 537
           I+G+G++ ++           +  PAD+F L ++     ++      EN +   D +   
Sbjct: 495 IQGVGRRWVELLVDR----GKVTSPADLFGLDKQTLLAFERMGPKLAENFIAAFDTA--- 547

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
                  R   +L R I +LGIRHVG + AR+LA ++        +++ + A   +   +
Sbjct: 548 -------RTGATLNRLICALGIRHVGEQTARTLAAHF-------ADLDALGAAQAE---T 590

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNV-------SSE 646
           L ++P +G  +A +I  F+ N  N   +E L    L  V P   R E +        S  
Sbjct: 591 LQQLPDIGPEVAASIRAFFANEGNRALLERLRGVGLWPVRPV--RPEADAAGAPGEGSGP 648

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +   +++FTG+L  + R  A+      GA +   +S+K D+++VGD PGSKL+KA +LG+
Sbjct: 649 LAGLRVLFTGSLTTLTRSDAERRAVAAGANILGSVSKKLDLLVVGDKPGSKLDKATKLGI 708

Query: 707 KIMNEEQFLFLLQ 719
           +++ E++FL LL+
Sbjct: 709 RVLREQEFLDLLE 721


>gi|257125939|ref|YP_003164053.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b]
 gi|257049878|gb|ACV39062.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b]
          Length = 706

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/724 (32%), Positives = 391/724 (54%), Gaps = 51/724 (7%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           KK+ +   + ++  + +++   L  EI YH++ YY    PII D EYDAL R    +   
Sbjct: 11  KKQNINNEKNINFSKIQEKYKKLRNEIEYHNNLYYNEDNPIISDMEYDALMRELKQLEQE 70

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---- 117
           +P+L  + + N P  KIGG  +    KV H  P LSL   +NI ++  F  R+ +     
Sbjct: 71  YPELLENSE-NSPTKKIGGTASEKFSKVRHRTPMLSLSNTYNISEIEDFDKRVKKIILSQ 129

Query: 118 --WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
               K +D ++ + LE K+DG  I++ YE G+ V A  RGDG  GEDV+  IR I +IP+
Sbjct: 130 IDENKNNDENLEYILELKLDGLSISLIYENGELVQAVTRGDGQIGEDVTENIREISSIPK 189

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-R 234
              L  P  +EVRGE+ +  ++F  +N E    G   +ANPRNAASG +R+L+ T +  R
Sbjct: 190 --KLKDPVSLEVRGEIILPISNFNRINQEREDDGEDVFANPRNAASGTIRQLDKTIVADR 247

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L+ +++ L            E ++ ++ LGF       +   F  +    ++    R T
Sbjct: 248 GLDCYLYYLVNAENYGINTHLESIEYIKNLGFQTTGVFEKYTDFTELEKSIDKWHDKRKT 307

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L Y+ DGLV KV+ F+L + LG   +SPRW I++KF  +Q  T+L D+  Q+GRTG++TP
Sbjct: 308 LDYETDGLVIKVNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLTDVTFQVGRTGVITP 367

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA LE VN+ G+++  A+LHN D I+            +DI++GD V+V++A E+IP+VV
Sbjct: 368 VAELEAVNLSGSVVKRASLHNFDEIR-----------RKDIKIGDNVIVEKAAEIIPQVV 416

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
           +++ ++R         P+ CP+C S    +L+ + G  + A +C   L C  +   ++ +
Sbjct: 417 NVVFDDRTGKEIEIQEPTNCPVCNS----ELSHEEG--LVALKCHNPL-CPEKVKRQIAY 469

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSRDA NI GLG + ++ F +       I+   DI++L++ ++    ++EN+   G  S
Sbjct: 470 FVSRDAMNISGLGDKIVEKFIE----LGKIKTIVDIYSLEKYRE----ELENLEKMGQKS 521

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-QEINNIIAHNND 593
           V NL +SI   +     + +++LGI  VG   A  L K + + +N   Q I N++A    
Sbjct: 522 VDNLINSIESSKTRDFSKVLYALGIPFVGKFNANLLTKTFKNIENLKNQSIENLLA---- 577

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKNVSSEIENK 650
                  V  +GD +A A+  F  +  N   I  ++ +  + +      EK   + I++K
Sbjct: 578 -------VKGIGDKVAVAVNTFLNDENNWKIITDLQNIGLQFAIDETNLEKIADNPIKDK 630

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             + TG LQK +R+  ++ +   G    +++S+  D +I G+  GSKLEKA++LG++++ 
Sbjct: 631 NFLATGKLQKYKRNDIKDIILSKGGNYLSVVSKNLDFLIAGEKAGSKLEKAEKLGIRVLT 690

Query: 711 EEQF 714
           EE F
Sbjct: 691 EEDF 694


>gi|222151884|ref|YP_002561044.1| DNA ligase [Macrococcus caseolyticus JCSC5402]
 gi|254781362|sp|B9E830|DNLJ_MACCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222121013|dbj|BAH18348.1| DNA ligase [Macrococcus caseolyticus JCSC5402]
          Length = 663

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 245/715 (34%), Positives = 386/715 (53%), Gaps = 60/715 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IEQ   EL  L  + +Y    Y+    P + DSEYD L      I    P+L +++D 
Sbjct: 1   MNIEQRVTELHQLLHQYNYE---YHVQDNPSVPDSEYDKLLHELIDIEREHPEL-KTDD- 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++GG    +  KV H  P LSL   ++ EDL  F  R+     K +   + + +E
Sbjct: 56  -SPTVRVGGTPVSAFEKVDHDTPMLSLGNAFSEEDLLAFDKRV-----KDEVGEVEYMVE 109

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  ++++Y  G FV    RGDG +GE+++  ++ I  IP  L+L++P   EVRGE 
Sbjct: 110 LKIDGLAVSLKYVDGVFVQGLTRGDGTTGENITQNLKTIHAIP--LTLSVPLTFEVRGEA 167

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ +  FLALN     VG    ANPRNAA+G LR+L+      R L+ F++ +    E+ 
Sbjct: 168 YMPRKSFLALNAYREKVGEPLAANPRNAAAGSLRQLDSKLTAKRKLDIFLYSVNDLRELN 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+ Q E L K+  +GF  N+  +       +  Y       R+ L YDIDG+V KV++ S
Sbjct: 228 AQSQSEALDKLDEIGFKTNHERKLCRNMEEVFEYIKYWTEKRNDLAYDIDGIVIKVNDLS 287

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SP+W I++KF  ++  T L DI++ IGRTG++TP A LEPV + G  +  
Sbjct: 288 KQDELGFTAKSPKWAIAYKFPAEEVITTLNDIELSIGRTGVVTPTAILEPVKVAGTTVGR 347

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V++++AGE+IP+VV ++++ R    +P++ 
Sbjct: 348 ASLHNEDLIR-----------EKDIRIGDSVVIRKAGEIIPEVVRVVLDRRPEGTKPYNM 396

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C   +VR      G++  A RC     C A+ +E + HFVSR A NI+GLG++ 
Sbjct: 397 PEICPSCGHELVR----IEGEV--ALRCINP-KCDAKLVEGVIHFVSRTAMNIDGLGERI 449

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  +  +     I   AD++TL+R +  +  ++      G+  V  L  +I   +  SL
Sbjct: 450 VEVLYNED----IINDVADLYTLERERLLTLERM------GEKKVDKLLAAIEASKTNSL 499

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRH+GA+ +  LA+ + +  N            N    +L ++  +G+ +AQ
Sbjct: 500 ERLLFGLGIRHLGAKASMVLAREFGTMDNL----------KNATVETLTQIDDIGEKMAQ 549

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------NKKLVFTGTLQKIQRH 664
           ++V + QN   I  +E L  E      R+      +IE       K +V TG L  + R 
Sbjct: 550 SLVTYLQNEDIINLLEKL--EQYGVNMRYTGVTKDDIELHPVFGEKTIVLTGKLTIMSRS 607

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A + +T LGA V+  +++KTDI+I G + GSK EKA  LG+ +  E+  +  L+
Sbjct: 608 EATKALTNLGAKVTNSVTKKTDIVIAGSDAGSKREKADSLGIPVWTEQMMVDALR 662


>gi|220904693|ref|YP_002480005.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254781312|sp|B8J0Q0|DNLJ_DESDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219868992|gb|ACL49327.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 712

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 246/728 (33%), Positives = 386/728 (53%), Gaps = 68/728 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+ +  L  E+  H+  Y+   +P I D ++DAL R    +   +P+L      + P 
Sbjct: 24  EERRRVQWLTAELERHNHLYHTLDRPEISDDQFDALFRELQDLETRWPEL---RSLHSPT 80

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI--FFTLEPK 133
            ++GG +   L K  HS+    L+ +++    ++F  R+ R W    +  +   F  +PK
Sbjct: 81  LRVGGGLLEGLAKKAHSLQMYGLDNVFSAGQWQEFAERMARAWGGDVNGPLPESFWCDPK 140

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEV 191
           +DG  + I Y  G    A  RGDG  GE V+  +R I T+P  L+     P  +EVRGEV
Sbjct: 141 LDGLALEIIYADGVLQEALTRGDGEVGEVVTDAVRTIRTVPLRLAGPGPFPARLEVRGEV 200

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK---TS 247
            + KNDF  LN++  A+G K +ANPRNAA+G LR+L+   I +R L F  + LG+   T 
Sbjct: 201 VMYKNDFAVLNEKQEALGLKTFANPRNAAAGTLRQLDTAIIGSRPLRFLAYSLGQALWTP 260

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q E++ ++R  GF      R  ++   +  Y   ++  R+  P +IDG V K+D
Sbjct: 261 APVCLLQSEVMSRLREYGFLTPPDGRLCSSVAEVEEYAQWVREHRAAFPMEIDGAVAKLD 320

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q+ LG  AR+PR+ ++ KF  + A T L DI+IQ+GRTG+LTPVA LEPV++GG +
Sbjct: 321 NLEAQQALGFTARAPRFAVAFKFPAELAQTLLKDIEIQVGRTGVLTPVAMLEPVSVGGVM 380

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED I+            RD+RVGD V+V+RAG+VIP+VV  ++ +R  +A+ 
Sbjct: 381 VSRATLHNEDEIR-----------NRDVRVGDTVMVRRAGDVIPEVVGPVLEKRPENARE 429

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP  CP C     R+         AA RC   +ACSA +L  + HFVS+   +I G+G
Sbjct: 430 YVFPHTCPACGQPAYREEGE------AAWRCE-NMACSAIRLRAITHFVSKAGLDIAGVG 482

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINK 544
           ++ ++    S      ++ PAD+FTL          ++ +LGF   G+V      D++ +
Sbjct: 483 QKWIEQLVTSG----RVQSPADLFTL---------TVQELLGFERMGEVLAHKFVDALAR 529

Query: 545 R-RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
              + +L R I +LGIRHVG + AR+LA ++ +      E+ N  A       +L+ +P 
Sbjct: 530 AVHSATLPRLISALGIRHVGEQTARTLALHFETL----DELENAGAE------TLLSLPD 579

Query: 604 VGDIIAQAIVEFYQNPRNICAVE-----------ALLKEVSPSIGRHEKNVSSEIENKKL 652
           VG  +A +I  F+ +P N   +E                 S          S  +  K +
Sbjct: 580 VGPEVASSIHNFFNSPANREQLERFRALGLWPRGGRSGGGSSGSTGEGGLASGPLAGKNI 639

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           +FTGTL  + R +A++     GA     +S+K D ++ G+  GSKLEKAQ LGV ++ EE
Sbjct: 640 LFTGTL-SMPRSEAEKLAETAGATPLGGVSKKLDYLVAGEKAGSKLEKAQALGVTVLTEE 698

Query: 713 QFLFLLQQ 720
           +F+ +L++
Sbjct: 699 EFMTMLRE 706


>gi|332519658|ref|ZP_08396122.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4]
 gi|332044217|gb|EGI80411.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4]
          Length = 665

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 232/706 (32%), Positives = 381/706 (53%), Gaps = 51/706 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E+  L QE+  H+  YY    P I D ++D   +   A+  A P+     D N P  +
Sbjct: 4   KQEIEQLRQELREHNYNYYVLDNPTISDYDFDIKLKELQALEEAHPEFF---DANSPTLR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+  +   V H     SL+  +++EDL+ + TRI +      D  I +T E K DG 
Sbjct: 61  VGGEVTKNFNTVVHEHRMYSLDNSYSLEDLKDWETRIKKLV----DGDISYTCELKYDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  + A  RGDG  G++V+A I+ I ++P  L  + P   ++RGE+ +    
Sbjct: 117 SISLTYENGNLLKAVTRGDGFQGDEVTANIKTIKSVPLQLKGDYPAKFDIRGEIVLPFKG 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           FL +N+E +A G +PY NPRN ASG L+  +  ++  R L   ++ L  T+ +  + Q+E
Sbjct: 177 FLKMNEERVANGEEPYKNPRNTASGSLKLQDSGEVAKRPLECLLYNLTGTN-LGVENQFE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R +GF V N  R   T   +  + N   + R  LPY+ DG+V KV+    Q++LG
Sbjct: 236 SLEKARKMGFKVPNEARLCKTIDEVFKFINHWDTERHNLPYETDGVVVKVNSLYQQEELG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW +++KF  +Q ST L +I  Q+GRTG +TPVA LEPV++ G ++  A+LHN 
Sbjct: 296 YTSKAPRWAMAYKFKAEQVSTILKEITYQVGRTGAITPVANLEPVDLAGTVVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+ D V V++ GE+IPK++ + + +R  D++P  + + CP 
Sbjct: 356 DQIEKL-----------DIRINDTVFVEKGGEIIPKIIAVDLTQRLQDSKPTKYATHCPE 404

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQ+ + R      G+  A H C     C  Q + R++HF+SR A +IEGLG + +    K
Sbjct: 405 CQTPLER----LEGE--AKHFCPNYNGCEPQVIGRIQHFISRKAMDIEGLGGETVGLLVK 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++TL + Q     ++       + S  NL + I   + IS ER +F+
Sbjct: 459 E----GLITNYADLYTLTKAQILPLERM------AEKSAENLINGIEASKQISFERVLFA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           +GIR VG  +A+ LAK+Y S +   Q      A   D    L +V  +G  IA+++V F+
Sbjct: 509 IGIRFVGETVAKKLAKHYKSIEALEQ------ASIED----LEKVDEIGIKIAESVVSFF 558

Query: 617 QNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            +  N   ++  LK V   +        N +++++ K  V +G   K+ R++ ++ +   
Sbjct: 559 ASEENRNIIKR-LKNVGVQLEISAEKLANQTNKLKGKSFVVSGVFTKVSRNELKKLIEDN 617

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G    + +S KTD ++ GD  G SK EKA++L + ++ E++FL ++
Sbjct: 618 GGKNVSSISSKTDFVVAGDKMGPSKKEKAEKLNISLITEDEFLQMV 663


>gi|297621454|ref|YP_003709591.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044]
 gi|297376755|gb|ADI38585.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044]
          Length = 665

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/704 (32%), Positives = 381/704 (54%), Gaps = 46/704 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++   +L +E+  H+  YY    P+I D E+D L +  + I    P+     DPN P  +
Sbjct: 3   KENYEALCKEVWEHNKRYYIDHAPLINDEEFDLLLKELEEIEKMHPEWI---DPNSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +        H  P LSL   ++ E++ +FI R+ +    K+   + F+ E K+DG 
Sbjct: 60  VGEMLTEGFPTALHQTPMLSLANTYSKEEVDEFIKRMEKLAGHKE---MAFSCELKMDGI 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            + + YE+G FV A  RGDG  G+D+SA ++ IP++P +++       IEVRGEVY+  N
Sbjct: 117 AVAVTYEQGGFVRAVTRGDGKKGDDISANLKTIPSLPLKLIDGKTLNRIEVRGEVYMPVN 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN          +ANPRNAA G L+ L+P     R L    +G+     +    QY
Sbjct: 177 AFETLNKTRKESNEALFANPRNAAGGSLKLLDPKATAQRSLAVVFYGISDPESLGLHSQY 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++   +  LG P     RQ  +   I ++  E++  R TL Y IDG+V K+D+ + QK+L
Sbjct: 237 DVHGFLGSLGLPTLEYRRQCFSREEIWNFVEEVRKKRETLSYQIDGIVIKLDDLAQQKRL 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   + PRW +++KFA +Q  TR+ DI +Q+GRTG++TPVA LEPV + G+ I+ ATLHN
Sbjct: 297 GSTGKQPRWAVAYKFAAEQTETRIRDIIVQVGRTGVITPVAELEPVLLAGSTISRATLHN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           E+ ++            +D+R+GD  L+++ G+VIPKV+ I   +R   + P+  P  CP
Sbjct: 357 EEEVE-----------RKDVRIGDSALIEKGGDVIPKVISINPEKRREGSMPWKMPDVCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C   +VR      G++  A RC     C  Q L R+ +FVS++A  I+ LG++ +    
Sbjct: 406 SCGHPLVR----VEGEV--AVRCPNREGCPEQLLRRIAYFVSKEAMEIDHLGEKVVKQLI 459

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       ++ P+DI+TL + Q      + N+ GF + +   L   I   +++S  RFI 
Sbjct: 460 R----IGYVKRPSDIYTLTKEQ------LLNLEGFKEKAAERLKQGIENSKHVSFSRFIM 509

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGI++VGA  A  LA       N + +I+ +       +  L+++  +G+  A++++E+
Sbjct: 510 ALGIKYVGAGTAELLA-------NRSGDIDGL---KQLSYEELLKINGIGEKAAESVIEY 559

Query: 616 YQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           + +  N+  +E L K  V P     +  +     NK  V TGTL+   R  A   + + G
Sbjct: 560 FSDAENLKEIERLKKFGVCPQKVERKTFIGHPFNNKTFVLTGTLENYTRTAAASLIKERG 619

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             V+  +S+KTD ++ G++PGSKLEKA+ LG++++ E +F+ ++
Sbjct: 620 GKVTGSVSKKTDYLLAGESPGSKLEKAESLGIQVLTESEFVKMI 663


>gi|325570045|ref|ZP_08145970.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC
           12755]
 gi|325156873|gb|EGC69044.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC
           12755]
          Length = 687

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 250/731 (34%), Positives = 395/731 (54%), Gaps = 66/731 (9%)

Query: 1   MKKRQLIPIEALSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           +K ++ I ++  S E Q+R E   L  +++ +   YY   +P + D  YD L      I 
Sbjct: 4   LKNKEDIRMDVPSKEIQSRAE--ELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIE 61

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             +P L  +ED   P  ++GG +     KVTH IP  SL  +++ E +  F  R+    Q
Sbjct: 62  TNYPQLV-TED--SPTQRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARV----Q 114

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
           K    ++ +  E KIDG  I+++YE+G+FV  A RGDG  GE+++  ++ + +IP  L L
Sbjct: 115 KALGKAVDYVCELKIDGLSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIP--LKL 172

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLN 237
             P  +EVRGE Y+ K  FL LN +    G + +ANPRNAA+G LR+L+ T I   R L+
Sbjct: 173 KEPISLEVRGECYMPKASFLKLNQQREEEGVEVFANPRNAAAGSLRQLD-TRIAAQRNLS 231

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F++ L     I A  Q+  L ++  LGF  N+  R  +T   + +Y  E    RS LPY
Sbjct: 232 TFLYTLADFGPIEANDQFSALNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPY 291

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KV+ F  Q  LG   ++PRW  ++KF  ++A T +  I+  +GRTG++TP A 
Sbjct: 292 EIDGVVIKVNNFKDQDALGFTVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAV 351

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           + PV + G  ++ A+LHN D+IK            +DIR+GD V++ +AG++IP+V  ++
Sbjct: 352 MTPVRVAGTTVSRASLHNVDFIK-----------MKDIRIGDSVIIYKAGDIIPEVAKVL 400

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
             +R   ++PF  P+ CP C S ++  L+ +      A RC     C AQ  E L HFVS
Sbjct: 401 EEKRTETSEPFEAPTHCPECGSELIH-LDEEV-----ALRCINP-KCPAQIKEGLSHFVS 453

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R+A NI+GLG + L+  F      + ++  AD++ L   Q  +  KI+      + S  N
Sbjct: 454 RNAMNIDGLGPRVLEQMFDK----YLVKDVADLYFLTEEQLLTLDKIK------EKSANN 503

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +I++ +  S+ER IF LGIRHVGA+ AR LA+++   +  ++               
Sbjct: 504 LLRAIHQSKENSVERLIFGLGIRHVGAKAARILAEHFGDLRTLSKAKEE----------E 553

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHE---KNVSSEIE 648
           +I +  +G  IA+++V ++ N      V  LL E+  +      +G      + V S  +
Sbjct: 554 IISLETIGATIAESVVTYFDNQE----VHDLLDELEKAGVNFAYLGLRTDQLEEVESPFK 609

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TG L    R +A+E +  LG  V+  +S+KTDI++ G+  GSKL KAQ LGV +
Sbjct: 610 EKTVVLTGKLSHFTREEAKERIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTV 669

Query: 709 MNEEQFLFLLQ 719
            +E Q +  ++
Sbjct: 670 WDEAQMVAAIE 680


>gi|172036733|ref|YP_001803234.1| DNA ligase [Cyanothece sp. ATCC 51142]
 gi|254781304|sp|B1WZL6|DNLJ_CYAA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171698187|gb|ACB51168.1| DNA ligase [Cyanothece sp. ATCC 51142]
          Length = 676

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 238/715 (33%), Positives = 382/715 (53%), Gaps = 59/715 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++ ++ L Q++   +  YY    PI+ D+ YD L R  D++    P L     P+ P 
Sbjct: 6   EIKQRVTQLRQQLQKANYAYYVLDDPIMEDAVYDQLYRELDSLEKEHPQLI---TPDSPT 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +       VTH+IP  SLE  +N+E+L+ +  R  R ++K++  S+ +  E KID
Sbjct: 63  QRVGDQPASQFVSVTHNIPLYSLENAFNLEELKAWEKRWQRSYEKEEFTSVEYVCELKID 122

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           G+ + + YE G FV    RGDG +GE+++  +R I +IP  L++ N P I+EVRGE ++ 
Sbjct: 123 GSALALTYENGLFVRGVTRGDGTTGEEITQNVRTIRSIPLKLNIDNPPPIVEVRGEAFLP 182

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
            ++F  +N E    G   +ANPRNAA+G LR+L+P  +  R L FF + L    E     
Sbjct: 183 LDEFDRINQEREEKGDALFANPRNAAAGTLRQLDPKIVDQRRLQFFAYTL-HLEEAEISS 241

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+E L  +   GF VN   +       + +Y+ + ++ R  LPY  DG+V K++ +SLQK
Sbjct: 242 QWESLNYLENSGFLVNPHRKLCQFLDEVEAYFKQWETARKDLPYMTDGVVVKINNYSLQK 301

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   + PRW I+ K+  ++A T + +I + +GRTG +TP+A +EPV++ G  +  ATL
Sbjct: 302 ALGFTQKFPRWAIALKYPAEEAPTLVKNIVVNVGRTGAVTPMAVMEPVHLAGTTVQKATL 361

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L           DIRVGD V++++AGE+IP+VV ++   R P+ QP+  P  
Sbjct: 362 HNSDRIAQL-----------DIRVGDTVIIRKAGEIIPEVVRVLKELRPPNTQPYEMPDR 410

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S ++R     +G+  A  RC   L+C A     L H+ SRDA +I GLG++ +  
Sbjct: 411 CPECDSPLIR----PSGE--AVIRCM-NLSCEAILRGSLVHWASRDALDIRGLGEKIVVL 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++      +   AD++ L      +   I N+   G  S  NL  +I   +     R 
Sbjct: 464 LIENG----LVNSIADLYYL------TPETIANLERMGSKSADNLIKAIEGSKQQPFSRV 513

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LGIR+VG+  A  L + + S    +Q            + SL  V  VG+ IAQ+I+
Sbjct: 514 LYGLGIRYVGSVTANLLVENFPSIDQLSQA----------SFASLSSVYGVGEEIAQSII 563

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----------IENKKLVFTGTLQKIQR 663
           +++   +N   ++ L K     +G   +  SSE             K  V TGTL  + R
Sbjct: 564 DWFSIEKNCDLIKQLKK-----VGLQLETTSSEQITVEPSLTPFSGKTFVITGTLPTLTR 618

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++A+  + Q G  V+  +S+KTD ++VG+  GSKL +A++LG+  ++E   L LL
Sbjct: 619 NEAKALIEQAGGKVTGSVSKKTDYLLVGEKAGSKLTQAEKLGINQLSEADLLRLL 673


>gi|260889570|ref|ZP_05900833.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254]
 gi|260860981|gb|EEX75481.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254]
          Length = 702

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/714 (33%), Positives = 382/714 (53%), Gaps = 52/714 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-- 70
           S    +++ + L  EI YH++ YY   KP+I D EYDAL R    +   +P+L ++E+  
Sbjct: 22  SFSDVQEKYAKLRNEIEYHNNLYYNEDKPLISDMEYDALMRELKQLEQKYPELLKNEENG 81

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSI 126
            + P  KIGG  +    KV H +P LSL   +NI ++  F  RI +       K+    +
Sbjct: 82  ESSPTEKIGGTASEKFSKVRHRVPMLSLSNTYNISEIEDFDKRIKKIILSENVKEHSKEL 141

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            + LE K+DG  I++ YE G  V A  RGDG  GEDV+  I  I TIP+ L  NI   +E
Sbjct: 142 EYILELKLDGLSISLIYENGVLVQAVTRGDGQVGEDVTENIMEITTIPKKLKENIS--LE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGE+ +  + F  +N E    G   +ANPRNAASG +R+L+ T +  R L+ +++ L  
Sbjct: 200 VRGEIILPISSFNRINQEREDDGEDVFANPRNAASGTIRQLDKTIVAERGLDCYLYYLVN 259

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                     E ++ +  LGF       +   F  +    ++  + R  L Y+ DGLV K
Sbjct: 260 AENYGINTHLESIEYIEKLGFKTTKIFEKYTDFKELEKSIDKWHNYRKKLDYETDGLVIK 319

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+ F+L + LG   +SPRW I++KF  +Q  T+L+D+  Q+GRTG++TPVA LE VN+ G
Sbjct: 320 VNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLMDVTFQVGRTGVITPVAELEAVNLSG 379

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           +++  A+LHN D I+            +DI++GD V+V++A E+IP+VV+++ ++R    
Sbjct: 380 SVVKRASLHNFDEIR-----------RKDIKIGDNVIVEKAAEIIPQVVNVVFDDRTGQE 428

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P+ CP+C S +  +      + + A +C   L C  +   ++ +FVSRDA NI G
Sbjct: 429 IEIQEPANCPVCNSELAHE------EGLVALKCHNPL-CPEKVKRQIAYFVSRDAMNISG 481

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++ F +       I+   DI++L++ ++    ++EN+   G  SV NL +SI   
Sbjct: 482 LGDKIVEKFIE----LGKIKTIVDIYSLEKYRE----ELENLEKMGQKSVDNLINSIESS 533

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-QEINNIIAHNNDDWLSLIRVPLV 604
           +N    + +++LGI  VG   A  L K + + +N   Q I N++A           V  +
Sbjct: 534 KNRDFSKVLYALGIPFVGKFNANLLTKTFKNIENLKNQSIENLLA-----------VKGI 582

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQK 660
           GD +A A+  F  +  N   +   LK +       E N      + I++K  + TG LQK
Sbjct: 583 GDKVAVAVNTFLNDEDNWKIITD-LKNIGLQFAVDENNSEEIADNPIKDKNFLATGKLQK 641

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            +R+  ++ +   G    + +S+  D +I G+  GSKLEKA++LGV+I+ E++F
Sbjct: 642 YKRNDIKDIILSKGGNYLSAVSKNLDFLIAGEKAGSKLEKAEKLGVRILTEDEF 695


>gi|182411830|ref|YP_001816896.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
 gi|254778148|sp|B1ZWH2|DNLJ1_OPITP RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|177839044|gb|ACB73296.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
          Length = 675

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/732 (32%), Positives = 386/732 (52%), Gaps = 79/732 (10%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           + P+EA S       ++ L  +++ HD+ Y++ ++P I D EYDALKR    +  A+P  
Sbjct: 1   MTPVEAQS------RIAELRAQVARHDELYHRRAQPQIGDFEYDALKRELAELEAAWPQF 54

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           AR   P     ++G +         H    +SL+  ++  +LR+F  R+ R  ++   + 
Sbjct: 55  ARGASPT---EQVGDDRTEGFQVYRHRERMMSLDNTYSETELREFHDRLVRELER---DG 108

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNI 181
           + F +EPKIDG  ++I YEKGK V A  RG+G  G+D++     I ++PR L     + +
Sbjct: 109 LKFVIEPKIDGLAVSITYEKGKLVRAVTRGNGIEGDDITTNALTIKSLPRELKRADGVPL 168

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240
           P +IE+RGEV+++  +FL +N +    G   YANPRN A+G +++L+P ++  R L   +
Sbjct: 169 PAVIEIRGEVFLTTEEFLRINRQREEAGEPLYANPRNLAAGTIKQLDPREVAQRKLEVVL 228

Query: 241 HGLG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           +G G  + +    + Q +    ++  G P       A     I +   E+ ++R T  Y 
Sbjct: 229 YGRGYVEPASALPETQAQFHGWVKAWGLPTVERFWTATGADEIWAAVQELDALRDTFAYA 288

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DG V K+D   LQ++ G  ++SPRW +++KFA  +A T+L  I +Q+GRTG+LTPVA L
Sbjct: 289 TDGAVVKLDAVPLQRRAGSTSKSPRWAMAYKFAPDRAETQLRAITVQVGRTGVLTPVAEL 348

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV + G  ++ ATLHN D I             +DIRVGD V V++AGE+IP V+ +  
Sbjct: 349 DPVQLAGTTVSRATLHNRDEI-----------ARKDIRVGDFVYVEKAGEIIPAVIGVNP 397

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R P+  P+ FP  CP C + VV+      G++  A RC    +C  Q   R++HF S+
Sbjct: 398 ARRAPECVPYVFPEKCPECGTAVVQ----LEGEV--AVRCP-NFSCPVQVRRRVQHFASK 450

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG---DVSV 535
              +IEG+G+  +D   +     +   +P DI+ L+R         EN+L  G   + S 
Sbjct: 451 ACVDIEGMGEAMVDVLVEK---GWVHSVP-DIYQLKR---------ENLLTLGKSVEKST 497

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY--------LSYQNFAQEINNI 587
             L ++I   +   L RFI  LGI H GA  A+ LA+ +          Y++F +E  ++
Sbjct: 498 DKLLEAIEASKRAELWRFIHGLGIPHAGAAAAKDLARTFGGLERLASARYEDFIREKASV 557

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE 646
           I               +G+ +A AI+ ++  PRN   V+ L++  V P +     N  S 
Sbjct: 558 IGG-------------IGETMALAILAYFAEPRNRAVVDELVRVGVQPVV----PNSGSA 600

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K  V TGTL  + R +A   +   G  VS+ +S+KT  ++ G+  GSKLEKA+ L V
Sbjct: 601 LAGKTFVLTGTLPTLTRDEATAQIEAAGGKVSSGVSKKTSYVLAGEEAGSKLEKARALAV 660

Query: 707 KIMNEEQFLFLL 718
            +++E +FL LL
Sbjct: 661 PVIDEAEFLRLL 672


>gi|256826919|ref|YP_003150878.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641]
 gi|256583062|gb|ACU94196.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641]
          Length = 725

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 247/719 (34%), Positives = 389/719 (54%), Gaps = 63/719 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           + +L +EI ++   YY    P I D+ +D+L R    +    P+     DP  P  ++GG
Sbjct: 19  IEALRREIEHNSWLYYAQDAPAISDAAFDSLMRELRQLEAEHPEFY---DPTSPTQRVGG 75

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +      VTH+    SL+   ++++L  ++ R +          +    E KIDG+ I 
Sbjct: 76  YVGEQFAAVTHAERMYSLDNAMDLDELDAWMDRTFEALG----TDVPLCCELKIDGSGIA 131

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLN----IPEIIEVRGEVYI 193
           + YE G+ + AA RGDG  GEDV+A IR +  +P   R  +L+    + E +E+RGEVY+
Sbjct: 132 VTYEDGRLMRAATRGDGVVGEDVTANIRTVRDVPLRLRAEALDALTDVEEALELRGEVYM 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K  F ALN      GR+ +ANPRNAA+G LR+ +PT    R L+ F +     + +   
Sbjct: 192 PKKSFNALNAAADREGRQEFANPRNAAAGSLRQKDPTITAQRDLSTFTYATASNAALTLP 251

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           GQ+E+L+ MR  GF VN  VR  ++   + ++  E    R +LPY+IDG+V KV++FSLQ
Sbjct: 252 GQWELLEWMRNAGFHVNPDVRLCHSRDEVRAFCKEALDKRQSLPYEIDGVVVKVNDFSLQ 311

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  AR+PRW I+ KF  ++ +T L DI +Q+GRTG LTPVA LEPV++ G++++ AT
Sbjct: 312 DRLGFTARAPRWAIAFKFPPEEKTTLLRDITVQVGRTGALTPVAELEPVSVSGSVVSRAT 371

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED ++            +D+RVGD V+V++AG+VIP+V+  +++ R  DAQP+  P+
Sbjct: 372 LHNEDEVR-----------RKDVRVGDTVIVRKAGDVIPEVLGPVLSLRPADAQPWHAPT 420

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S VVR+   + G ++   RC   L C AQ  ERL H+ SR A +IEG+G++ + 
Sbjct: 421 SCPSCGSPVVRE---EGGAIL---RCV-SLDCPAQAHERLIHWASRGALDIEGMGEEVIG 473

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTS-----TTKIENILGFGDVSVTNLYDSINKRRN 547
              +S      +   AD + L      +       K    +  G      +   I++ ++
Sbjct: 474 RLLES----GRVVDVADYYHLTEYDLATLDMGRVNKDGEAIHLGSTVAAKIVGQIDQSKH 529

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R +F LGIRHVG   A ++A+ Y S +   +      A  +D    L  +  +G I
Sbjct: 530 RGFARVLFGLGIRHVGKTTAEAIAQAYPSIEALRE------AKMDD----LAAIEGIGPI 579

Query: 608 IAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTL--QK 660
           IA+++  F + P+N+  ++ LL      E +    R  + +S        V TG+L    
Sbjct: 580 IAESLFVFLRTPQNVQVIDRLLAAGVVMEEAALTPRAPQTLS----GLTFVLTGSLVQSG 635

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A + +  +GA VS  +S KT  +I G+  GSK +KA  LGV +++E  FL +L+
Sbjct: 636 MTRTEAGDALKAMGAKVSGSVSGKTSFVIAGEAAGSKRDKAVSLGVPVIDEAAFLHILE 694


>gi|296110658|ref|YP_003621039.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154]
 gi|295832189|gb|ADG40070.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154]
          Length = 681

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 243/720 (33%), Positives = 400/720 (55%), Gaps = 61/720 (8%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  PIE L+   A++E+++ ++ +  +   YY+   P++ D  YDAL  R   +  AFP 
Sbjct: 4   EFTPIEQLTTPMAQQEIANHQETLLQYGVAYYEQDAPLVEDYVYDALYARLVELEAAFPQ 63

Query: 65  LARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                +P+ P  K+GG +  S L KV H  P LSL  ++++E+L ++  R  +    +  
Sbjct: 64  FI---NPDSPTQKVGGAITKSGLEKVVHPAPMLSLGDVFSLEELEEWDARTTKTLGFQS- 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  + + Y  GK + A+ RG+G  GEDV+A ++ I  IP++L  N P 
Sbjct: 120 ---AYNLELKIDGLAVALTYVDGKLIQASTRGNGMIGEDVTANVKMIKVIPQIL--NEPL 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
            IEVRGE+Y+SK+ F  LN++    G  P+ANPRNAA+G LR+LN + +  R L+ FV+ 
Sbjct: 175 TIEVRGEIYMSKSSFATLNNQRETEGLAPFANPRNAAAGSLRQLNTSIMKQRQLSAFVYY 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
             +   +    Q + L++   LG P ++          I  Y ++  + R  L Y IDG+
Sbjct: 235 TAEPDILGVTTQSQALERFHELGLPTDHHNHVILKMPDIADYISKYSADRDKLSYGIDGV 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+E   Q  LG   + PRW I++KF  ++A T L DI+  +GRTG +TP A ++PV 
Sbjct: 295 VVKVNELDDQTDLGNTVKIPRWAIAYKFPPEEALTILRDIEWTVGRTGAVTPTAVMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+LHN DY+             + +R+GD V + +AG++IP++  +I+++R 
Sbjct: 355 LAGTTVQRASLHNPDYLN-----------DKGVRLGDTVTLHKAGDIIPEIGQVILSKRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            ++QP++ P  CP C+S++V       G++  A RC    ACSAQ  E L HF SR+A N
Sbjct: 404 VNSQPYNIPLLCPACESKLVH----LEGEV--ALRCINP-ACSAQIQEGLAHFASRNAMN 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG+G + +    +    A  I   A I+ L      + T++  +  F + SV+NL ++I
Sbjct: 457 IEGMGPRVIAQLLQ----AGFIEDVASIYRL------NATQLHALDKFKEKSVSNLLNAI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + ++ SLE+ +F LGIR VGA+ AR +A+ + +    A+   + IA+          + 
Sbjct: 507 ERSKDNSLEKLLFGLGIRMVGAKAARLIAEKFKTLSVIARATVSEIAN----------ID 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-------SSEIENKKLVFT 655
            +G+ IA+++V+++  P +    + LLKE++ + G ++  +       SS    KK+V T
Sbjct: 557 GIGETIARSLVQYFNMPES----QQLLKELTAA-GVNQSYLSEVVIDESSFFYGKKIVLT 611

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G L +  R    +++   GA VS+ +S KTD++I G + GSKL KA +LG+ +  E Q +
Sbjct: 612 GKLSESNRSAVSKWLQNHGASVSSAVSSKTDLLIAGTDAGSKLAKANELGIAVWTESQLI 671


>gi|254804544|ref|YP_003082765.1| DNA ligase [Neisseria meningitidis alpha14]
 gi|254668086|emb|CBA04596.1| DNA ligase [Neisseria meningitidis alpha14]
          Length = 841

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 269/825 (32%), Positives = 406/825 (49%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D     + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF ALN     
Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y +M+  R  LPY+IDG+V KV+  + Q++LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D +  
Sbjct: 338 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                      +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++ +  T 
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKEAADKTV 556

Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562
              + +   D SV               N+   I   +   L RF+F+LGIRHV      
Sbjct: 557 AESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616

Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                     G  +ARS+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675

Query: 597 SLIRVPL-----------------VGDIIAQAI-------VEFYQN-------------- 618
             + +P                  + +  AQA+       +E  QN              
Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSE 735

Query: 619 PRNICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           P+N   +E L    +  PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840


>gi|299067453|emb|CBJ38652.1| DNA ligase [Ralstonia solanacearum CMR15]
          Length = 813

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/649 (35%), Positives = 345/649 (53%), Gaps = 61/649 (9%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           ++L   ++ +   YY   +P + D+EYD L R  +A+    P+L     P+ P  ++GG 
Sbjct: 18  AALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEADHPEL---RTPDSPTLRVGGA 74

Query: 82  MNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTM 138
           +      V H +P LS+  E          F   + R     + D  + +  E K DG  
Sbjct: 75  VLPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRRELGLAESDPPVEYAAELKFDGLA 134

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISK 195
           I +RYE+G  V AA RGDG +GEDV+  IR I  IP   R +   +P+++EVRGEVY+ +
Sbjct: 135 INLRYERGFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRR 194

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAK 252
           +DF  LN      G K + NPRN A+G +R+L+P     R L+FF +GLG+ +      +
Sbjct: 195 DDFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPE 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
               ML  +   GFPV+          G+V ++  + + R +LP+DIDG+VYKV+  +LQ
Sbjct: 255 THSGMLDALVAYGFPVSKERAAVTGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNSLALQ 314

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG R R PRW ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNAT
Sbjct: 315 RELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNAT 374

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER----------- 421
           LHNED ++            +D+RVGD V+V+RAG+VIP+VV +++  R           
Sbjct: 375 LHNEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDMPGSDLF 423

Query: 422 ----HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
                P   PF  P  CP+C S VVR+     G+ VA  RC+GGL CSAQ+ E ++HF  
Sbjct: 424 NPAQQPKHPPFELPKSCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAG 477

Query: 478 RDAFNIEGLGKQQLDFFFKSE---DPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDV 533
           R   +IEGLG++ +D   + E     A   R+  D F  ++RR           +  G +
Sbjct: 478 RRMMDIEGLGERYIDNLVELEYVHGIADLFRLTLDDFLEMKRRADERDGVTPETVAAGKI 537

Query: 534 SVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           +     NL D I   +   L RF+F+LGIRHVG   A++LA +  S     +    +   
Sbjct: 538 ATKWAENLLDGIRASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL--- 594

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
                  L+ +P VG  +A+AI +F+  P+N  A++ALL       G H
Sbjct: 595 -------LLTLPDVGATVAEAIADFFAEPKNQQALDALLAAGVAPQGEH 636



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 19/214 (8%)

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
           AD F   + QQ     ++ +L  G         S   R  +       +LG+  + A  +
Sbjct: 610 ADFFAEPKNQQA----LDALLAAGVAPQGEHAPSAKLREQLEPAALYAALGVPKLTAIRS 665

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + LA    S    AQ     +AH +   L  +   +   +++   +E   +   +  +EA
Sbjct: 666 KQLATLVPS---LAQ-----LAHVDTAQLEGLPADVSASLLSW--LEADDHRAGLAQLEA 715

Query: 628 LLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L  E+  ++  G  E+     +  K +V TGTL  + R +A+  +   GA VS  +S+KT
Sbjct: 716 LRAELLAAMPAGAAEEGA---LSGKTVVLTGTLPTLSRDEAKAMLEAAGAKVSGSVSKKT 772

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           D ++ G+  GSKL +AQ+LGV++++E   L LLQ
Sbjct: 773 DYVVAGEEAGSKLARAQELGVRVLDEAGMLALLQ 806


>gi|310826558|ref|YP_003958915.1| DNA ligase [Eubacterium limosum KIST612]
 gi|308738292|gb|ADO35952.1| DNA ligase [Eubacterium limosum KIST612]
          Length = 666

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 243/703 (34%), Positives = 380/703 (54%), Gaps = 50/703 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++QA  ++S L+++I  ++  YY    P+I D  YD + +   ++  A+P    S+ P+ 
Sbjct: 5   LKQAEAKISQLKKQIEENNVRYYDKDAPVIPDYAYDRMMQELISLETAYPQFLTSDSPS- 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GG  + +  KV ++ P LSL   +N  DLR F TRI +         + + +E K
Sbjct: 64  --QRVGGAPSEAFEKVHYTTPKLSLSNAFNAGDLRDFDTRIRKVCP-----DVAYCVEHK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  + + YE G  V  + RGDG +GE+V+  ++ + TIP  L L  P  +EVRGEV I
Sbjct: 117 FDGLTVVLDYENGLLVRGSTRGDGVTGENVTQNLKTVKTIP--LRLTEPMTLEVRGEVLI 174

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K DF  LN      G   +ANPRNAA+G +R+L+P     R L+ FV  L        +
Sbjct: 175 YKEDFEELNAAREEQGEPLFANPRNAAAGSIRQLDPKLAAERPLDIFVFNLEYCENRSFE 234

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK-SIRSTLPYDIDGLVYKVDEFSL 311
              E    +   GF  +  V+       I++Y  EM+   R  LPY+IDG+V KV+  + 
Sbjct: 235 THKESFDFLTHCGFKTSE-VKLYKDMEDIITYIEEMEHGGREALPYEIDGMVIKVNNLAE 293

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG+ ++SPRW I++KF+ +Q  T + DI +Q+GRTG LTPVA LEPV + G++I+ A
Sbjct: 294 RERLGDTSKSPRWAIAYKFSPEQTVTTVRDITVQVGRTGALTPVAELEPVLLAGSVISRA 353

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNEDYI  +D         +DIR+GDRV++++AG+VIP+V   I  +R      F+ P
Sbjct: 354 TLHNEDYI--ID---------KDIRIGDRVVIQKAGDVIPEVDHSIPEDRTGAEVVFTMP 402

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S   R      G+ V   +C   + C AQ   ++ HF SRDA NI+G+G   +
Sbjct: 403 AHCPVCGSETYR----VPGEAVT--KCL-NMDCPAQVFRKIVHFASRDAMNIDGMGPAVV 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                +E     I    DI+ +  R++  T     +   G+ SV NL ++I   ++  L 
Sbjct: 456 RQLLDNE----LIHTIVDIYHVSDRREDLT----GLEKMGEKSVDNLINAIEDSKSRPLS 507

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F+LGI  VGA  A+ LA ++ S     +               L  +  +G  +A  
Sbjct: 508 KVVFALGIPLVGANGAKILASHFGSMDALMEASEE----------ELTEIYDIGGKMAVE 557

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IV+F++   N   V+  L+E   ++  +    ++E+  K  V TGTL  + R +A+E + 
Sbjct: 558 IVDFFKTDANRRIVDG-LREAGVNMTENTARATAELAGKTFVLTGTLPTMGRREAKEILE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             GA VS  +S+KTD ++ G+NPGSK EKA  L V +++EE F
Sbjct: 617 SHGAKVSGSVSKKTDYVLAGENPGSKAEKAMSLDVPVIDEETF 659


>gi|326804258|ref|YP_004322076.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651204|gb|AEA01387.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a]
          Length = 677

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/715 (33%), Positives = 388/715 (54%), Gaps = 60/715 (8%)

Query: 15  EQARKE-LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +QA +E +++L  +++ +   YY   +P + D  YD   R+ + +  + PDL +S+ P  
Sbjct: 11  QQAVQERMAALVDQLNQYAHEYYVLDQPSVSDDHYDKTYRQLEELEASHPDLIQSDSPT- 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G  +N    KV    P LSL  +++ E+L  ++  +    QK+      F  E K
Sbjct: 70  --QRVGDVLNEKFDKVHFDQPMLSLGDVFSQEELMAWVGGV----QKEFGQDTEFVCEMK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  +++ Y+ G+ V  A RGDG++GE+++  I+ I +IP  L L  P  +EVRGE+Y+
Sbjct: 124 IDGLSVSLLYQDGRLVRGATRGDGNTGENITNNIKTISSIP--LRLQEPLSVEVRGEIYM 181

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
            K  F  LN++  A G   +ANPRN+A+G +R+L+P     R LN F++     ++    
Sbjct: 182 PKASFAQLNEDREAAGLATFANPRNSAAGSVRQLDPKVTAKRNLNVFLYTGVLPADAGIN 241

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L      G  VN   +  ++   I  Y  ++  IR  L YDIDG+V KV++F  Q
Sbjct: 242 SQAELLTSYPQWGLRVNPEFKLTHSKEEIWDYVEKVSQIRHDLAYDIDGIVIKVNDFDQQ 301

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   ++PRW I++KF  +QA T + DI+  +GRTG++TP A ++PV + G+ +  A+
Sbjct: 302 EELGYTVKAPRWAIAYKFPAEQAKTTIRDIEWTVGRTGVVTPTAVMDPVLVAGSTVQRAS 361

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+            +DIR+ D+V++ +AG++IP+VV +I  ER  D+Q +  P 
Sbjct: 362 LHNMDLIR-----------AKDIRLNDKVIIHKAGDIIPEVVSVITEERDADSQAYPEPQ 410

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CPICQS +V   +        A RC    AC AQ  E+L HFVSR+A +I G+G   + 
Sbjct: 411 TCPICQSDLVHLEDE------VALRCVNP-ACPAQAKEKLFHFVSRNAMDITGVGPAVIT 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +   D A+ ++ P+D++ L      +  K++      + S  N+  +I++ R  SLER
Sbjct: 464 QLY---DKAY-VKDPSDLYQLDEATLLTLDKVK------EKSAQNILQAIDQSRENSLER 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRHVG + AR +A  + S +          A    D  ++  +  +G+IIA ++
Sbjct: 514 LLFGLGIRHVGVKAARDIAMTFGSME----------AIQTADREAISAIDGIGEIIADSV 563

Query: 613 VEFYQNPRNICAVEALLKE--------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           VE++ N   I  V  L +          SP   +   +V S  + K +V TG L    R 
Sbjct: 564 VEYFANDEVIALVNRLSERGVNMTYLGSSP---QAIASVDSFWQGKTVVLTGKLNHYSRQ 620

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+  +   G  V+  +S+ TD+++ G++ GSKL KAQ L + I +EE+ L  L+
Sbjct: 621 EAKSLIEGQGGKVTGSVSKNTDVVVAGEDAGSKLTKAQDLDILIFDEEEMLSHLE 675


>gi|257875591|ref|ZP_05655244.1| DNA ligase [Enterococcus casseliflavus EC20]
 gi|257809757|gb|EEV38577.1| DNA ligase [Enterococcus casseliflavus EC20]
          Length = 676

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 246/696 (35%), Positives = 383/696 (55%), Gaps = 63/696 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY   +P + D  YD L      I   +P L  +ED   P  ++GG +     KVTH IP
Sbjct: 26  YYVKDQPSVEDYLYDQLYAELVEIETNYPQLV-TED--SPTQRVGGIILPGFEKVTHDIP 82

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL  +++ E +  F  R+    QK    ++ +  E KIDG  I+++YE+G+FV  A R
Sbjct: 83  LYSLNDVFDKEGIVAFDARV----QKALGKAVDYVCELKIDGLSISLKYEEGRFVRGATR 138

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+++  ++ + +IP  L L  P  +EVRGE Y+ K+ FL LN +    G + +A
Sbjct: 139 GDGTVGENITENLKTVKSIP--LKLKEPISLEVRGECYMPKSSFLKLNQQREEEGAEVFA 196

Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           NPRNAA+G LR+L+ T I   R L+ F++ L     I A  Q+  L ++  LGF  N+  
Sbjct: 197 NPRNAAAGSLRQLD-TRIAAQRNLSTFLYTLADFGPIEANDQFSALNELDQLGFRTNHER 255

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R  +T   + +Y  E    RS LPY+IDG+V KV+ F  Q  LG   ++PRW  ++KF  
Sbjct: 256 RVCHTIDEVWAYIEEFHDKRSELPYEIDGVVIKVNNFKDQDALGFTVKAPRWAAAYKFPP 315

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           ++A T +  I+  +GRTG++TP A + PV + G  ++ A+LHN D+IK            
Sbjct: 316 EEAETVIETIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASLHNVDFIK-----------M 364

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           +DIR+GD V++ +AG++IP+V  ++  +R   +QPF  P+ CP C S ++  L+ +    
Sbjct: 365 KDIRIGDSVIIYKAGDIIPEVAKVLEEKRTEASQPFESPTHCPECGSELIH-LDEEV--- 420

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
             A RC     C AQ  E L HFVSR+A NI+ LG + L+  F   D +  ++  AD++ 
Sbjct: 421 --ALRCINP-KCPAQIKEGLSHFVSRNAMNIDSLGPRVLEQMF---DKSL-VKDVADLYF 473

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   Q  +  KI+      + S  NL  +I++ +  S+ER IF LGIRHVGA+ AR LA+
Sbjct: 474 LTEEQLLTLDKIK------EKSANNLLRAIHQSKGNSVERLIFGLGIRHVGAKAARILAE 527

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
           ++           ++ A +      +I +  +G  IA+++V ++ N      V  LL E+
Sbjct: 528 HF----------GDLRALSKAKEEEIISLEAIGATIAESVVTYFDNQE----VHDLLDEL 573

Query: 633 SPS------IG-RHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
             +      +G R+E+  +V S  + K +V TG L    R +A+E +  LG  V+  +S+
Sbjct: 574 ERAGVNFAYLGLRNEQLEDVESPFKEKTVVLTGKLSHFTREEAKERIENLGGKVTGSVSK 633

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KTDI++ G+  GSKL KAQ LGV + +E Q +  ++
Sbjct: 634 KTDIVVAGEEAGSKLTKAQSLGVTVWDEAQMVAAIE 669


>gi|160889578|ref|ZP_02070581.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492]
 gi|317480069|ref|ZP_07939180.1| DNA ligase [Bacteroides sp. 4_1_36]
 gi|156861095|gb|EDO54526.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492]
 gi|316903746|gb|EFV25589.1| DNA ligase [Bacteroides sp. 4_1_36]
          Length = 665

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 243/708 (34%), Positives = 374/708 (52%), Gaps = 54/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E+  H+  YY  + P I D E+D L R    +    P+    +D N P  +
Sbjct: 4   KEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEY---QDDNSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136
           +G ++N +  +V H  P LSL   ++  ++  F  R+     KK  N  F    E K DG
Sbjct: 61  VGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYERV-----KKALNEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL  N P+  E+RGE+ +   
Sbjct: 116 TSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNYPKSFEIRGEILMPWV 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L    E+   G Y
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ     GF  +   R+A++   +  Y N   + R  LP   DG+V KV+    QK L
Sbjct: 235 ENLQAAASWGFKTSEHTRKAHSLEEVFEYINYWDTERKNLPVATDGIVLKVNSLRQQKNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIRFEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++ L+      T  I+N+   G+ S  N+ + I   + +  ER +
Sbjct: 458 YR----LGLIKDTADLYQLK------TDDIKNLERMGEKSAENIVNGIAASKEVPFERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D   L  +  +G+ IAQ+I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSFTDIEEL----------ENADLEKLKNIDEIGEKIAQSIIT 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ NP N   VE  LK     + R E+++S    ++  + +V +G      R + +E + 
Sbjct: 558 YFSNPANRELVER-LKSNGLQLHRTEEDLSGYTDKLAGQSIVISGVFTHHSRDEYKEMIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ G+N G +KLEKAQ+LGVKIM+E++FL LL
Sbjct: 617 KNGGKNVGSISSKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLALL 664


>gi|307244055|ref|ZP_07526174.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678]
 gi|306492579|gb|EFM64613.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678]
          Length = 702

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/697 (34%), Positives = 378/697 (54%), Gaps = 53/697 (7%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           ++YH D YY    P I D +YD L +    +  AFP+  + + P     ++GG       
Sbjct: 38  LNYHSDRYYNSDSPEISDMDYDRLMKSLILLEEAFPEYKKKDSPT---VRVGGRALDKFD 94

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           +  H  P LSL  ++N E++R F  R+ R   +  +  + + +E KIDG  + + YE G 
Sbjct: 95  QYQHERPMLSLSNVFNNEEIRDFDRRV-RGGLEPANGQVNYVVETKIDGLSVGLTYEDGY 153

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
               A RGDG+ GE+V+  I+ I +IP  + ++    +  RGEVYISK+DF A+N     
Sbjct: 154 LRVGATRGDGYIGENVTENIKTIASIP--IKIDEKRKLVARGEVYISKSDFEAVNAYQED 211

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
              + YANPRN A+G LR+L+P     R L+ F+  L    ++  +   +    M+ LG 
Sbjct: 212 HDLQTYANPRNLAAGSLRQLDPKLAAKRPLDIFIFNLENIDDLGIEKHSQSFDYMKSLGL 271

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
            VN   +       ++ Y       RS+LPY+IDG+V KVD  + ++ LG  A+SPRW  
Sbjct: 272 KVNEEYKLCKDIEEVIDYIEYWTENRSSLPYEIDGMVIKVDSIAQREALGFTAKSPRWAT 331

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           + KF  ++  T+LLDI++++GRTG +TP A LEPV + G +++ ATLHNEDYIK      
Sbjct: 332 AFKFPAERKKTKLLDIEVEVGRTGTITPTAILEPVRLAGTMVSRATLHNEDYIK------ 385

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 RDIR+GDRVLV++AG++IP+VV++ +++R      F  P  CP C    VR L+
Sbjct: 386 -----ERDIRIGDRVLVQKAGDIIPQVVEVSLDDRTGQEVMFDMPHECPACGQETVR-LD 439

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
            +     AA +C   ++C AQ    + HFVSRDA +IEG+G+  +            I+ 
Sbjct: 440 GE-----AAVKCI-NISCPAQIRRGIIHFVSRDAMDIEGMGESIITSLLDK----GVIKD 489

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            AD++ +      S  ++      G  SV NL  SI K ++  L R I  LGIR VG + 
Sbjct: 490 IADLYYMDPDILVSLDRM------GQKSVANLMASIEKSKSNDLWRLINGLGIRFVGVKG 543

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A+ LA       +    ++ I+A + +D   LI++   G I++ ++V+F+   +N   VE
Sbjct: 544 AKLLA-------DACGSMDKIMAASEED---LIQIEEFGQIMSDSVVKFFHEDKNKLTVE 593

Query: 627 ALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
            L +     EV   I + ++ ++   E  K+V TGTL  ++R+ A+  + +     ++ +
Sbjct: 594 KLRQAGLNMEV---IEKEDQGIAKVFEGMKIVLTGTLPSMKRNDAKALIEERAGKATSSV 650

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+ T  ++ G+  GSKL+KA  LGVK+++E +F+ L+
Sbjct: 651 SKSTSFVLAGEEAGSKLDKALSLGVKVIDEAKFMELV 687


>gi|330466191|ref|YP_004403934.1| DNA ligase [Verrucosispora maris AB-18-032]
 gi|328809162|gb|AEB43334.1| DNA ligase, NAD-dependent [Verrucosispora maris AB-18-032]
          Length = 717

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/713 (33%), Positives = 372/713 (52%), Gaps = 51/713 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QAR+  ++L QE++ H   YY    P + D+E+D   R   A+   FP L     P+ P 
Sbjct: 31  QARERHATLSQELTEHQYRYYVLDAPTVSDAEFDRQLRELTALEEEFPAL---RTPDSPT 87

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG  +     V H+   +SL+  +  E+L  +  R+    ++     + +  E K+D
Sbjct: 88  QRVGGTFSTDFTPVAHAERMMSLDNAFADEELAAWAERV----ERDAGGPVPYLCELKVD 143

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGE 190
           G  I + Y+ G+ + AA RGDG +GEDV+A +R+I  +P  L+ +     +PE IEVRGE
Sbjct: 144 GLAINLTYQGGRLIRAATRGDGRTGEDVTANVRSIRDVPSRLTDSAEYGPVPEFIEVRGE 203

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
           +Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G     
Sbjct: 204 IYFPVEAFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARKGF 263

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E    ++  G P ++  R      G+  Y     + R  + ++IDG+V KVD  
Sbjct: 264 QPSTQSESYSALKAWGLPTSDRWRVLPDLTGVRDYIAHYAAHRHDVEHEIDGVVVKVDPV 323

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            +Q +LG  +R+PRW I+ K+  ++ +T+LLDI++++GRTG +TP A LEPV + G+ + 
Sbjct: 324 PIQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRALLEPVKVAGSTVA 383

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+V+  +V+ R PDA+PF 
Sbjct: 384 YATLHN---------AREVERKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRPPDARPFV 432

Query: 430 FPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            P+ CP C +     L P K G +    RC    +C AQ  ER+ H   R AF+IE LG 
Sbjct: 433 MPTTCPACGT----PLAPAKEGDVDI--RCPNSRSCPAQLRERVFHLAGRGAFDIEALGY 486

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +       ++     I    D+F+L   Q   +    N  G    + T L D++   R  
Sbjct: 487 KSGAALLDAQ----IITDEGDLFSLDAEQLARSPFFVNKDGSLGSNATKLLDNLAVARER 542

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R + +L IRHVG   A++LA+++ S          I A +N     L  V  VG  I
Sbjct: 543 DLWRVLVALSIRHVGPTAAQALARHFRS----------IEAIDNASEEELSSVDGVGPTI 592

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHK 665
           A +I E++    +    E + K     +   E+ V+     +E   +V TGTL    R +
Sbjct: 593 AASIREWFAVDWH---REVVRKWAEAGVRMAEEAVAEGPRPLEGLTVVVTGTLSGYSRDQ 649

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A E +   G  VS  +S+KT  ++VGDNPGSK +KA  L V I++EE F  LL
Sbjct: 650 AAEAIQSRGGKVSGSVSKKTGFVVVGDNPGSKADKAATLKVPILDEEGFQVLL 702


>gi|219667570|ref|YP_002458005.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2]
 gi|254781313|sp|B8FP44|DNLJ_DESHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219537830|gb|ACL19569.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2]
          Length = 659

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/700 (33%), Positives = 369/700 (52%), Gaps = 51/700 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           + +L ++I   +  YY   +P + D+EYDAL +    +    P+      P+ P  ++GG
Sbjct: 8   IEALREQIEEANYQYYGLDQPTLSDAEYDALLQELIRLEKEHPEFL---TPDSPSQRVGG 64

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +     KV H+   LSL+  ++  DL +F  R+     +     + + +E KIDG  + 
Sbjct: 65  YIAKEFPKVRHAEALLSLDNAFDAGDLLEFDRRVRSMVAE-----VEYVVELKIDGLTVA 119

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YE G  V  A RGDG  GE+++A ++ IP IP  L     + ++VRGE Y+ K  FL 
Sbjct: 120 LTYEDGALVRGATRGDGEVGEEITANLKTIPAIPLRLRKQA-DRLDVRGEGYMPKGSFLR 178

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEML 258
           LN E    G+  +ANPRNAA+G LR+L+ + IT  R L +F + +    E     Q  +L
Sbjct: 179 LNQEREEAGQPLFANPRNAAAGSLRQLD-SRITAQRKLGYFAYQVLTPEEGELASQTAVL 237

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             ++  GF VN   R  +    +++Y  EM   R   PYDIDGLV KV++ + Q++LG  
Sbjct: 238 DYLKEQGFSVNPEYRVFSAIEEVIAYCGEMVEKRHNYPYDIDGLVIKVNDIAQQRELGFT 297

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+SPRW I++KF  +Q  T + DI I++GRTG+LTP A L PV + G+ +  ATLHN D 
Sbjct: 298 AKSPRWAIAYKFPAEQVETVVEDIVIRVGRTGVLTPTAYLTPVFVAGSTVGRATLHNLDN 357

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+            +D+R+GD VL+++AG+VIP+VV I+  +R    + F  P  CP CQ
Sbjct: 358 IR-----------AKDVRIGDHVLIQKAGDVIPEVVKILPEKRTGGERIFEMPELCPECQ 406

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S V+R+         AAHRCT  + C A+Q E + HFVSR+A NI+GLG   +    +  
Sbjct: 407 SPVIREEGE------AAHRCT-SITCPARQREAIIHFVSRNAMNIDGLGPAVIYQLLE-- 457

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  I+  AD++ L+        ++      G  S  NL  +I   +   L   IF LG
Sbjct: 458 --AGLIKDAADLYALEYDALVPLERL------GKKSAENLLKAIEDSKERGLAPLIFGLG 509

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG +  + LA+ Y + ++                  L  +P VG  +AQ++ +F+Q 
Sbjct: 510 IRHVGEKAGKILAQKYGTMEDL----------EKAQVEELQEIPDVGPAMAQSVAQFFQQ 559

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                 +   L++    +             K +V TG+LQ+  RH  +  + + G   +
Sbjct: 560 ESTHHFLNK-LRQAGVVMSAQHSAKPQIFAGKSIVVTGSLQRWDRHYVETMIEEFGGKAA 618

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +S+KT  ++ G+  GSKL KA++LG+ +++EE+F  LL
Sbjct: 619 SSVSKKTAFVVAGEKAGSKLAKAKELGIPVLSEEEFAELL 658


>gi|295107089|emb|CBL04632.1| DNA ligase, NAD-dependent [Gordonibacter pamelaeae 7-10-1-b]
          Length = 731

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 246/728 (33%), Positives = 383/728 (52%), Gaps = 59/728 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           EA S   AR E  +L +EI +H   YY    P I D  +D+L R    +  A P+L    
Sbjct: 39  EATSDPAARIE--ALRREIEHHTYLYYAQDAPEISDGAFDSLMRELRELEAAHPELV--- 93

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           DP+ P  ++GG +      V H+    SL+   ++E+L  +I R+   + +     +   
Sbjct: 94  DPSSPTQRVGGYVGEQFAPVRHARRMYSLDNAMDLEELDAWIERVTEAFGRM----VPVV 149

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSL----NIP 182
            E KIDG+ I + YE G+ V AA RGDG +GEDV+A +R +  +P   R  +L    +  
Sbjct: 150 CELKIDGSSIALTYEDGRLVRAATRGDGTTGEDVTANMRTVKDVPLRLREAALGGLRDAA 209

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
             +E+RGEVY+ K+ F ALN   +A G++ +ANPRNAA+G LR+ +P     R L+ F++
Sbjct: 210 APVELRGEVYMPKSSFDALNAAAVANGKQAFANPRNAAAGSLRQKDPAITANRDLSTFIY 269

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +     +  +GQ+E+L  +R  GF VN  V    T   + ++       R  LPY+IDG
Sbjct: 270 AVADERALAVEGQWELLAWLREAGFHVNPDVELCETREAVHAFCERAIERREALPYEIDG 329

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV+ F+ Q+ +G  AR+PRW ++ KF  ++ +T L DI +Q+GRTG LTPVA +EPV
Sbjct: 330 VVVKVNAFAQQESMGYTARAPRWAVAFKFPPEEKTTLLHDITVQVGRTGKLTPVAEMEPV 389

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHNED ++            +D+RVGD V+V++AG+VIP+V+  ++  R
Sbjct: 390 VVAGSTVARATLHNEDEVQ-----------RKDVRVGDTVIVRKAGDVIPEVLGPVLALR 438

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             DA  +  P+ CP C S V+R+     G++    RC   + C AQ LERL H+ SR A 
Sbjct: 439 PADAAVWRMPATCPSCGSPVIRE----EGEV--DFRCI-SIDCPAQALERLLHWASRGAM 491

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ-----QTSTTKIENILGFGDVSVT 536
           +I+G+G++ +    +S      +   AD +TL   +          K    +  G     
Sbjct: 492 DIDGMGEEIVSRLVES----GRLTDVADYYTLDEVELALLDMGRVNKDGEPIRLGSTVAK 547

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            L  +I+  R     R +F LGIRHVG  IA  LA  Y S       I  ++  + +D  
Sbjct: 548 KLVAAIDGSRARPFSRALFGLGIRHVGKTIAELLAAAYPS-------IEALMEASEEDLA 600

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLV 653
           +L     VG  IA+++  F + P N   +E L K    ++      ++ +   +E    V
Sbjct: 601 ALDG---VGPKIARSVYLFLRTPDNAAVIERLRKRGVAMADEAADPDEQLPQTLEGLTFV 657

Query: 654 FTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            TG+L    + R +A   +   GA VS  +S+KT  ++ G+  GSK +KA  LGV +++E
Sbjct: 658 LTGSLVESGMTRDEAGAALKARGAKVSGSVSKKTSYVVAGEAAGSKYDKAVTLGVPVLDE 717

Query: 712 EQFLFLLQ 719
              L +L+
Sbjct: 718 AALLRILE 725


>gi|164686703|ref|ZP_02210731.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM
           16795]
 gi|164604093|gb|EDQ97558.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM
           16795]
          Length = 674

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/713 (33%), Positives = 391/713 (54%), Gaps = 56/713 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A+K +  L   I+YH++ YY    P I D EYD L +    +    P+L R++ P+   N
Sbjct: 3   AQKRIEELINLINYHNEKYYNQDSPEIEDFEYDNLMKELIKLEEENPELKRNDSPS---N 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+      +V H IP LSL   ++ EDL+ F +R+    ++   + + + +E KIDG
Sbjct: 60  RVGGKPLDKFEQVVHKIPMLSLSNAYSWEDLKDFDSRV----REAVGSDVEYVVEFKIDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYIS 194
             + + Y  G F   A RG+G  GE+++  +  I  IP    LNI E  E  VRGEVYIS
Sbjct: 116 LSVGLNYNNGIFESGATRGNGIVGENITKNLMTIKNIP----LNIDEKGELTVRGEVYIS 171

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K DF  +N       +  YANPRN A+G LR+L+      R L+ F+  L   +    K 
Sbjct: 172 KKDFEEINKIQEEQDQPLYANPRNLAAGSLRQLDSKLTAKRPLDIFIFNLEDINSKQFKT 231

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L+ ++ LGF V+   +   T   I+ Y       R  L + IDG+V KV+  + ++
Sbjct: 232 HSESLEYLKQLGFHVSPEFKVFKTMDEIIEYIKYWTEHREDLGFGIDGMVIKVNNLAQRE 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           Q+G  A+SPRW I++KF  ++  T+LLDI +++GRTG +TP A LEP+ + G  ++ ATL
Sbjct: 292 QMGYTAKSPRWAIAYKFPAERKETKLLDIVVEVGRTGTITPTAVLEPIRLAGTTVSRATL 351

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNEDYI             +DI++ D VLV++AG++IP+VV++I  +R  +   F  P  
Sbjct: 352 HNEDYI-----------NEKDIKINDTVLVQKAGDIIPQVVEVIKEKRTGEEIEFKMPEE 400

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C    VR      G+  AA +C   ++C AQ    + HF SR+A +I+GLG+  +  
Sbjct: 401 CPVCGEPTVR----LEGE--AAVKCI-NISCPAQIRRGIIHFASREAMDIDGLGESIITL 453

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             K +     I+  +D++ L++ Q +   ++      GD S TNL ++INK +   L RF
Sbjct: 454 LLKQD----LIKDISDLYYLKKEQISVLERM------GDKSATNLINAINKSKENDLWRF 503

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I  LGI+ +G + A+ LA  +       ++++ +++    +   LI +   G  +A ++V
Sbjct: 504 INGLGIKLIGTKAAKILASEF-------KDLDKLMSATEQE---LINLEEFGQTMADSVV 553

Query: 614 EFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           EF++  +NI  +E  LKE   +   I   ++++    E  K+V TGTL  ++R+ A+E +
Sbjct: 554 EFFKEEKNISVIEK-LKEAGVNTKLIESDDEDIPKIFEKMKIVLTGTLPTLKRNDAKEMI 612

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            + G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL L+    T
Sbjct: 613 EKRGGKATSSVSKSTSFVLAGEEAGSKLTKANDLGIKVIDEEKFLQLIDLKTT 665


>gi|315641089|ref|ZP_07896168.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952]
 gi|315483097|gb|EFU73614.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952]
          Length = 671

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/719 (32%), Positives = 385/719 (53%), Gaps = 77/719 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L+++++ +   YY   +P++ D+ YD L ++  A+  A P+   S+ P     ++
Sbjct: 7   EQIHDLQKKLTEYAYAYYVKDQPVVDDAYYDQLYQQLVALETAHPEYQTSDSPT---QRV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     KV H IP  SL  +++  ++  F  R+    QK   +++ +  E KIDG  
Sbjct: 64  GGVVRKGFEKVVHEIPLYSLNDVFSKAEIIAFDQRV----QKTLGHAVSYICELKIDGLS 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I+++YE G+ V  A RGDG  GE+++   + + +IP  L+L  P  IEVRGE Y+ K  F
Sbjct: 120 ISLKYENGRLVRGATRGDGTIGENITDNSKTVKSIP--LTLTEPIDIEVRGECYMPKASF 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           + LN +    G   +ANPRNAA+G +R+L+     +R L+ F++ L     +    Q E 
Sbjct: 178 IQLNQKREEEGLDIFANPRNAAAGSIRQLDSKVTASRNLSTFLYTLADFGPLHVTNQAEA 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  +  LGF  N      +T   + +Y       RS LPY+IDG+V KV++FS Q QLG 
Sbjct: 238 LTHLDDLGFRTNQERAVCSTIDDVWAYIESFHDKRSQLPYEIDGVVIKVNDFSDQNQLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW +++KF  ++A T + +I+  +GRTG++TP A + PV + G  +  A+LHN D
Sbjct: 298 TVKAPRWAVAYKFPPEEAQTTIEEIEWTVGRTGVVTPTAVMTPVRVAGTTVARASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YIK            +DIR+ D+V++ +AG++IP+V  +I   R   +QP++ P+ CP+C
Sbjct: 358 YIK-----------MKDIRLHDQVVIYKAGDIIPEVAHVIEEARDSASQPYTIPTNCPVC 406

Query: 438 QSRVV--------RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            S +V        R +NPK               C A   E + HFVSRDA NIEG+G +
Sbjct: 407 GSELVHLDEEVALRCINPK---------------CPALLKEGISHFVSRDAMNIEGIGPR 451

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++ FF   +  F +   AD++ L   Q  +  K++      + S TN+  +I   +  S
Sbjct: 452 MIEQFF---NHGF-VEDVADLYRLTLDQLLTIDKVK------EKSATNMLQAIEASKQNS 501

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LE+ +F LGIRHVG + A+ LA+ + +    +Q               ++ V  +G  IA
Sbjct: 502 LEKLLFGLGIRHVGVKAAKLLAERFETLTQLSQATVE----------EILTVATIGPTIA 551

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVS---SEIENKKLVFTGTLQK 660
            ++V ++ N      V  L+ E+  +      +G   ++V+   S  + K +V TG LQ 
Sbjct: 552 DSLVTYFANEE----VHELMTELKAAGVNETYLGLKSQDVAEIESAFQGKTVVLTGKLQT 607

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             R +A++ + +LG  ++  +S+KTD++I G + GSKL KAQ L + +  EE+ +  L+
Sbjct: 608 YTRDQAKKRIEELGGTITGSVSKKTDLVIAGADAGSKLTKAQALDIPVWTEEEMIAALE 666


>gi|126700928|ref|YP_001089825.1| DNA ligase [Clostridium difficile 630]
 gi|123362868|sp|Q180F3|DNLJ_CLOD6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 677

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/707 (32%), Positives = 387/707 (54%), Gaps = 52/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N
Sbjct: 6   VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTN 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E KIDG
Sbjct: 63  RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK+
Sbjct: 119 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           +F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E   +   
Sbjct: 177 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHS 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++
Sbjct: 237 ESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEM 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHN
Sbjct: 297 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP
Sbjct: 357 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    +R      G+  AA +C   ++C AQ    + HFVSRDA NI+GLG+  +    
Sbjct: 406 VCSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                    +I  D+  L   ++     +E +   G+ S  NL +SI K +   L R I 
Sbjct: 459 NE-------KIIQDVSDLYYIKKEDVVDLERM---GEKSADNLINSIEKSKENDLWRLIN 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI+ +G + A+ LA       NF ++++ +I+  ++    L  +   G I+A ++VEF
Sbjct: 509 GLGIKFIGVKAAKILA------YNF-KDLDEVISATSE---QLEELEEFGSIMANSVVEF 558

Query: 616 YQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++  +N+  +   LK V   + S+    + V    E  K+V TGTL  ++R+ A+E + +
Sbjct: 559 FKEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKEMIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 618 RGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 664


>gi|17546117|ref|NP_519519.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) protein
           [Ralstonia solanacearum GMI1000]
 gi|81505313|sp|Q8XZJ7|DNLJ_RALSO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|17428413|emb|CAD15100.1| putative dna ligase (polydeoxyribonucleotide synthase [nad+])
           protein [Ralstonia solanacearum GMI1000]
          Length = 813

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 235/683 (34%), Positives = 359/683 (52%), Gaps = 63/683 (9%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           ++L   ++ +   YY   +P + D+EYD L R  +A+    P+L     P+ P  ++GG 
Sbjct: 18  AALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPEL---RTPDSPTLRVGGA 74

Query: 82  MNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTM 138
           +      V H +P LS+  E          F   + R     + D  + +  E K DG  
Sbjct: 75  VLPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRRELGLAESDPPVEYAAELKFDGLA 134

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISK 195
           I +RYEKG  V AA RGDG +GEDV+  IR I  IP   R +   +P+++EVRGEVY+ +
Sbjct: 135 INLRYEKGFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVGGAVPDVLEVRGEVYMRR 194

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAK 252
           +DF  LN      G K + NPRN A+G +R+L+P     R L+FF +GLG+ +       
Sbjct: 195 DDFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPD 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
               ML  +   GFPV+          G+V ++  + + R +LP+DIDG+VYKV+  +LQ
Sbjct: 255 THSGMLDALVAYGFPVSKERAAVKGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNSLALQ 314

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG R R PRW ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNAT
Sbjct: 315 RELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNAT 374

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER----------- 421
           LHNED ++            +D+RVGD V+V+RAG+VIP+VV +++  R           
Sbjct: 375 LHNEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLF 423

Query: 422 ----HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
                P   PF  P  CP+C S VVR+     G+ VA  RC+GGL CSAQ+ E ++HF  
Sbjct: 424 NPTQQPKHPPFELPRSCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAG 477

Query: 478 RDAFNIEGLGKQQLDFFFKSE---DPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDV 533
           R   +IEGLG++ +D   + E     A   R+  D F  ++RR           +  G +
Sbjct: 478 RRMMDIEGLGERYIDNLVELEYVHGIADLYRLTLDDFLEMKRRADERDGVTPETVAAGKI 537

Query: 534 SVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           +     NL D I   +   L RF+F++GIRHVG   A++LA +  S     +    +   
Sbjct: 538 ATKWAENLLDGIRASKTPPLARFLFAMGIRHVGESTAKTLADWLGSLAIVRRAPAPL--- 594

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIE 648
                  L+ +P VG  +A+AI +F+  P+N  A++ALL       G H  +  +  ++E
Sbjct: 595 -------LLTLPDVGATVAEAIADFFAEPKNQQALDALLTAGVAPQGEHPPSAKLRDQLE 647

Query: 649 NKKLVFTGTLQKIQRHKAQEYVT 671
             +L     + K+   ++++  T
Sbjct: 648 PAELYAALGVPKLTAIRSKQLAT 670



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 47/73 (64%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +V TGTL  + R +A+  +   GA VS  +S+KTD ++ G   GSKL +AQ+LGV
Sbjct: 734 LSGKTVVLTGTLPTLSRDEAKAMLEAAGAKVSGSVSKKTDYVVAGVEAGSKLARAQELGV 793

Query: 707 KIMNEEQFLFLLQ 719
           ++++E   L LLQ
Sbjct: 794 RVLDEAGMLALLQ 806


>gi|255327262|ref|ZP_05368336.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296]
 gi|255295542|gb|EET74885.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296]
          Length = 735

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 251/748 (33%), Positives = 384/748 (51%), Gaps = 63/748 (8%)

Query: 4   RQLIPIE--ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           +Q  P E  A   E  R E + L  +I      YY    P + D+EYD L RR + I   
Sbjct: 8   QQTAPAENTAEITEALRAEYAELTDKIRAARRAYYNEDAPFLSDAEYDKLYRRLEIIEAE 67

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
            P +  ++ P     ++GGE   +   VTH     SLE +++ E+LR ++T+     +  
Sbjct: 68  HPLIIANDSPT---QEVGGEAIEAFAPVTHLQRMYSLEDVFSFEELRAWLTKTEESTRNL 124

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LN 180
             ++  +  E KIDG  + + Y  G  V AA RGDG +GEDV+  +R I +IP+ L+  N
Sbjct: 125 TGSAPQWLTELKIDGLAVNLLYRNGTLVRAATRGDGTTGEDVTHNVRTIASIPQQLTGEN 184

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            PE IE+RGEV+IS  DF  LN+ MIA G+ P+ANPRNAA+G LR+ +     +R L+ +
Sbjct: 185 HPEEIEIRGEVFISSADFEKLNESMIAAGKNPFANPRNAAAGSLRQKDAAITASRPLSMY 244

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           VHG+G  + +    QYE    +   G PV+     A     +  + N+    R +L ++I
Sbjct: 245 VHGIGSRTGLDIATQYETYDLLASWGLPVSPYSEIAANTEAVFDFINKYGEQRHSLVHEI 304

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++F+ Q QLG  +R PRW +++K+  ++  T+LLDI + +GRTG +TP   +E
Sbjct: 305 DGIVIKVNDFATQAQLGYTSRVPRWAVAYKYPPEEVHTKLLDIRVDVGRTGRVTPYGVME 364

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+ +  ATLHN+D +K            + + +GD V++++AG+VIP++V  +V 
Sbjct: 365 PVFVSGSTVERATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVAPVVA 413

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            R    + F  PS CP C S     L P K G +    RCT   +C AQ  ER+ +  SR
Sbjct: 414 LRDGTEREFVMPSECPSCGS----PLAPGKEGDV--DLRCTNPRSCPAQLTERVYYAASR 467

Query: 479 DAFNIEGLGKQQLDFFFKSEDP----------AFSIRIPADI--FTLQRRQQ---TSTTK 523
            AF+IE LG +          P           FS+ I  D+   T++R ++     T K
Sbjct: 468 GAFDIEALGFEAAKALTSPATPHTPPLTTEAHLFSLNI-EDLREVTIEREKKVKGVGTGK 526

Query: 524 IENILGF------------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           +E +  F               +  NL+  + K +   L R + +L IRHVG   AR+LA
Sbjct: 527 MERVPYFYTKPTKARPEPKPTKNTLNLFAELEKAKQQPLWRVLVALSIRHVGPTAARALA 586

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             + S Q          A    D   L  V  VG  IA +I+E++    +   V++    
Sbjct: 587 AEFGSMQ----------AIREADRERLAAVDGVGTTIADSIIEWFAEDWHAEVVDSWAAA 636

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   +++V   +E   +V TGTL    R  A+E +   G   S  +S++T  ++ G
Sbjct: 637 GVRMEDTRDESVERTLEGLTVVVTGTLNGYTRDGAKEAIISRGGKASGSVSKRTHFVVAG 696

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            N GSKL+KAQQLG+K+++EE F  LL+
Sbjct: 697 ANAGSKLDKAQQLGLKVLDEEGFTALLE 724


>gi|238063192|ref|ZP_04607901.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149]
 gi|237885003|gb|EEP73831.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149]
          Length = 702

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/715 (33%), Positives = 374/715 (52%), Gaps = 51/715 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR+  ++L QE++ H   YY    P + D+E+D   R  +A+   FP L     P+ P 
Sbjct: 16  EARERHATLSQELTEHQYRYYVLDAPTVSDAEFDRQLRELEALEAEFPAL---RTPDSPT 72

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            +IGG  +     VTH+   LSL+  +  E+L  +  R+    ++     + +  E K+D
Sbjct: 73  QRIGGTFSTDFTPVTHAERMLSLDNAFADEELAAWAERV----ERDAGGPVPYLCELKVD 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIEVRGE 190
           G  I + YEKG+ V AA RGDG +GEDV+A +R+I  +P  L+      ++PE +EVRGE
Sbjct: 129 GLAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIRDVPARLTPSDEFPDVPEFVEVRGE 188

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
           +Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G     
Sbjct: 189 IYFPIAGFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARRGY 248

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E    +R  G P ++  R      G+  +       R  + ++IDG+V KVD  
Sbjct: 249 TPTAQSESYAALRAWGLPTSDRWRVVPDLAGVAEFIAYYAEHRHDVEHEIDGVVVKVDPV 308

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S+Q +LG  +R+PRW I+ K+  ++ +T+LLDID+ +GRTG +TP A LEPV + G+ + 
Sbjct: 309 SIQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIDVNVGRTGRVTPFAILEPVLVAGSTVA 368

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+V+  +V+ R  DA+PF 
Sbjct: 369 LATLHN---------AHEVERKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRPADARPFV 417

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C +     L P+    V   RC    +C AQ  ER+ H   R AF+IE LG +
Sbjct: 418 MPTTCPACGT----PLRPEKEADVDI-RCPNSRSCPAQLRERVFHLAGRGAFDIEVLGYK 472

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                  ++     I    D+F+L   +   +    N  G    +   L D++   R   
Sbjct: 473 GAAALLDAQ----VITDEGDLFSLDAERLAQSPFFVNKDGSLGSNAAKLLDNLAVARERD 528

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R +  L IRHVG   A++LA+++ S           I   +++ LS   V  VG  IA
Sbjct: 529 LWRVLVGLSIRHVGPTAAQALARHFRSMA--------AIQEASEEELS--SVDGVGPTIA 578

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHK 665
            +IV+++     +     ++++ + +  R  +    E    +E   +V TGTL    R +
Sbjct: 579 ASIVDWF----TVDWHREVVRKWAEAGVRMAEEAGDEGPRPLEGLTVVVTGTLSGFSRDQ 634

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A E +   G  V+  +S+KT  ++VGDNPGSK +KA  L V +++EE F  LL Q
Sbjct: 635 AAEAIQTRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKVPVLDEEGFRVLLDQ 689


>gi|223986795|ref|ZP_03636777.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM
           12042]
 gi|223961228|gb|EEF65758.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM
           12042]
          Length = 663

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/694 (33%), Positives = 372/694 (53%), Gaps = 47/694 (6%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L ++++ ++  Y+    P + D+EYD L R    +    P+L    DPN P  ++GG++
Sbjct: 8   ALRRQLNQYNYEYHVLDHPTVSDAEYDQLMRELITLEQQHPELF---DPNSPTQRVGGQV 64

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                K+TH  P LSL  ++N E+L +F  +      + +   + +  E KIDG  +++ 
Sbjct: 65  LEEFNKITHKRPMLSLGDVFNKEELFEFARK-----AEAEVGPVDYCCECKIDGLAMSLN 119

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           Y+ G+F YA  RGDG  GEDV+  +R I +IP  + +     +EVRGEVY+ K  F  LN
Sbjct: 120 YQGGRFQYAVTRGDGVVGEDVTHNVRTIKSIP--MEIEYEGELEVRGEVYMPKASFERLN 177

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
            +    G + +ANPRNAA+G +R+L+     +R L+   + + +  ++      E L  +
Sbjct: 178 QKRRENGEEEFANPRNAAAGSIRQLDSKVAASRGLDALWYHVPQGPQLGHHQHSESLDFI 237

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LGF +N   R       +  +  ++  +RS LPY+IDG+V KV+++  Q+QLG  A++
Sbjct: 238 HSLGFRINPLNRLCRNIEEVWQFVEDLTLMRSDLPYEIDGIVIKVNDYEKQQQLGFTAKT 297

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           P+W I++KF  ++A TRL +I + +GRTG +TP A+L PV + G  +  A LH+ED I+ 
Sbjct: 298 PKWAIAYKFPAEEAVTRLENIFVTVGRTGKITPNAQLTPVRLAGTSVGFAQLHDEDMIR- 356

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD V+V +AG++IP++V  +  +R     P+ FP  CP+C   +
Sbjct: 357 ----------DKDIRIGDYVIVHKAGDIIPEIVASVPEKRDGLQVPYVFPKVCPVCGMPL 406

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           VR  +       A H C     C A+ +E + HF SRDA NI+GLG ++++ F       
Sbjct: 407 VRYPDE------AHHFCINN-DCPARVVESIAHFCSRDAMNIDGLGVKRVELFHSQG--- 456

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +    DI+ L+        +I      G  S  NL ++I   +  SLE+ ++ LGIR 
Sbjct: 457 -WLNTVEDIYNLKDHYD----EILETPKMGKKSADNLLEAIENSKQNSLEKLLYGLGIRQ 511

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G + A+ LA  + + Q   Q            +  L  +  +G I AQ +++F+ +  N
Sbjct: 512 IGEKAAKILAYRFETMQALMQAT----------YEELEEIKDIGAITAQTVLDFFHDEAN 561

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              +EAL+      I   E+ V +    K +V TGTL  + R +AQ  +  LGA VS  +
Sbjct: 562 QHLIEALIGHGLNMICLKEEQVETIFTGKTVVLTGTLATMTRPEAQALLEHLGATVSGSV 621

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           S++TD +I G+N GSKL KAQ LGV  M E +F+
Sbjct: 622 SKRTDFVIYGENAGSKLTKAQSLGVATMTESEFM 655


>gi|150021387|ref|YP_001306741.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
 gi|190359297|sp|A6LN55|DNLJ_THEM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149793908|gb|ABR31356.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
          Length = 662

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/711 (33%), Positives = 383/711 (53%), Gaps = 57/711 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++E+  L +EI YH+  YY  + PII D EYD L ++   +   +P  +    PN 
Sbjct: 1   MKNIKEEIERLRKEIEYHNYRYYVLADPIISDEEYDRLLKKLIELEKKYPKFS---SPNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GG +     KV H+ P LSL+  +N  ++++F  RI R   +   NS+ +  E K
Sbjct: 58  PTQKVGGGVISGFEKVEHTTPMLSLDNTYNETEIKEFDNRIKRLLNR---NSVEYVCELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++IRYE G+F  A  RG+G  G+D++  ++ I +IP  L L     IEVRGE+++
Sbjct: 115 IDGISVSIRYENGEFRQAISRGNGIIGDDITENVKKIKSIP--LRLFKKYTIEVRGEIFM 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
              +F   N      G +P+ANPRNAA+G +R+L+ + +  R L+ F++ +        K
Sbjct: 173 PIKEFEKYNKIAEEEGLQPFANPRNAAAGTIRQLDSSIVAKRNLDSFIYYIVNPENYSLK 232

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q+E L  ++ LGF VN           I+ ++ +M   R  L Y IDGLV KV+ F  Q
Sbjct: 233 TQWEALDFLKKLGFKVNRQSILCKNVECIIDFWKKMTKERKNLDYWIDGLVIKVNNFEFQ 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LGE ++SPRW I+ KF   +  T+++D+++ +GR+GI+TPVA  EP+++ G ++  A+
Sbjct: 293 KILGETSKSPRWAIAFKFPAIKKKTKIIDVELNVGRSGIITPVAIFEPIDLDGTIVKRAS 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN +YI+            +DIR+GD V +++AG +IP+VV ++  +R    +    P 
Sbjct: 353 LHNFEYIQ-----------DKDIRIGDYVYIEKAGGIIPQVVSVVKEKRTGLEKEIKIPK 401

Query: 433 FCPICQSRVVRDLNPKTGKLVA---AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            CP+C        N   GKL     A RC     C  +    L+ FVS+ AF+I G+G++
Sbjct: 402 SCPVC--------NGPVGKLTEDEIAIRCLNP-HCPQKLKRHLEIFVSKSAFDISGIGEK 452

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D        A  I+  ADIF L      +   +  I G G  S+  + + I K +   
Sbjct: 453 IIDKIV----DAKLIKDIADIFYL------TPFDLAQISGLGQKSIAKILEQIEKSKKTP 502

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R I  LGI  VG + ++ L          A++  NI   ++  +  LI++  +G  IA
Sbjct: 503 LNRVIVGLGIPMVGEKTSKIL----------AEKFKNIEKLSSATYDELIKIENIGPEIA 552

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQRHKAQ 667
           ++IV ++QN +    +  L K     +   EK+V    + K L F  TG L+   R + +
Sbjct: 553 KSIVTYFQNEKTKEIINKLKK---AGVNLEEKDVKKSDKLKGLTFAITGKLKSYTREEIK 609

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + + G  VS  +S KT+ +I G+ PGSKLEKA++L +KI++EE FL L+
Sbjct: 610 KIIEENGGKVSNSVSSKTNFLIAGEEPGSKLEKAKRLNIKIISEEDFLKLI 660


>gi|89896634|ref|YP_520121.1| hypothetical protein DSY3888 [Desulfitobacterium hafniense Y51]
 gi|122997178|sp|Q24QL5|DNLJ_DESHY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89336082|dbj|BAE85677.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 659

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/702 (33%), Positives = 370/702 (52%), Gaps = 51/702 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + + +L ++I   +  YY   +P + D+EYDAL +    +    P+      P+ P  ++
Sbjct: 6   QRIEALREQIEEANYQYYGLDQPTLSDAEYDALLQELIRLEKEHPEFL---TPDSPSQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     KV H+   LSL+  ++  DL +F  R+     +     + + +E KIDG  
Sbjct: 63  GGYIAKEFPKVRHAEALLSLDNAFDAGDLLEFDRRVRALVAE-----VEYVVELKIDGLT 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G  V  A RGDG  GE+++A ++ IP IP  L     + ++VRGE Y+ K  F
Sbjct: 118 VALTYEDGALVRGATRGDGEVGEEITANLKTIPAIPLRLRKQA-DRLDVRGEGYMPKGSF 176

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYE 256
           L LN E    G+  +ANPRNAA+G LR+L+ + IT  R L +F + +    E     Q  
Sbjct: 177 LRLNQEREEAGQPLFANPRNAAAGSLRQLD-SRITAQRKLGYFAYQVLTPEEGELASQTA 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L  ++  GF VN   R  +    +++Y  EM   R   PYDIDGLV KV++ + Q++LG
Sbjct: 236 VLDYLKEQGFSVNPEYRVFSAIEEVIAYCGEMVEKRHNYPYDIDGLVIKVNDIAQQRELG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  +Q  T + DI I++GRTG+LTP A L PV + G+ +  ATLHN 
Sbjct: 296 FTAKSPRWAIAYKFPAEQVETVVEDIVIRVGRTGVLTPTAYLTPVFVAGSTVGRATLHNL 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +D+R+GD VL+++AG+VIP+VV I+  +R    + F  P  CP 
Sbjct: 356 DNIR-----------AKDVRIGDHVLIQKAGDVIPEVVKILPEKRTGGERIFEMPELCPE 404

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS V+R+         AAHRCT  + C A+Q E + HFVSR+A NI+GLG   +    +
Sbjct: 405 CQSPVIREEGE------AAHRCT-SITCPARQREAIIHFVSRNAMNIDGLGPAVIYQLLE 457

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I+  AD++ L+        ++      G  S  NL  +I   +   L   IF 
Sbjct: 458 ----AGLIKDAADLYALEYDALVPLERL------GKKSAENLLKAIEDSKERGLAPLIFG 507

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG +  + LA+ Y + ++                  L  +P VG  +AQ++ +F+
Sbjct: 508 LGIRHVGEKAGKILAQKYGTMEDL----------EKAQVEELQEIPDVGPAMAQSVAQFF 557

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q       +   L++    +             K +V TG+LQ+  RH  +  + + G  
Sbjct: 558 QQESTHHFLNK-LRQAGVVMSAQHSAKPQIFAGKSIVVTGSLQRWDRHYVETMIEEFGGK 616

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            ++ +S+KT  ++ G+  GSKL KA++LG+ +++EE+F  LL
Sbjct: 617 AASSVSKKTAFVVAGEKAGSKLAKAKELGIPVLSEEEFAELL 658


>gi|330718928|ref|ZP_08313528.1| DNA ligase, NAD-dependent [Leuconostoc fallax KCTC 3537]
          Length = 681

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 250/716 (34%), Positives = 383/716 (53%), Gaps = 61/716 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  QA++E++ L+ +++ +   YY+   P + D  YDA   R   +  AFP     
Sbjct: 8   VSELTTAQAQQEIAKLQDDLTRYGVEYYEDDNPSVEDHVYDAFYARLVDLEAAFPQFMT- 66

Query: 69  EDPNGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
             P  P  ++GG  +   L K+TH +P LSL  ++++E+L+ +  R  +    + D    
Sbjct: 67  --PESPTQRVGGTNVKSELTKITHPVPMLSLGDVFSLEELQDWDARTTKALGFQSD---- 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + LE KIDG  + + YE G+ V A+ RG+G  GEDV+A ++ I  IP+ LS   P  IEV
Sbjct: 121 YNLELKIDGLAVALDYENGELVQASTRGNGTIGEDVTANVKTIQAIPQRLSE--PLTIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGE+Y+ K  F  LN +    G  P+ANPRNAA+G LR+L+      R L+ FV+     
Sbjct: 179 RGEIYMPKKSFAKLNQQRELEGLAPFANPRNAAAGSLRQLDAKVTKKRELSAFVYYTADF 238

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             + A+ Q   LQ+   LG P N   +  +    I SY       R TL Y IDG+V KV
Sbjct: 239 ETLGAETQSGALQRFAALGLPTNTTNQVISVMSYISSYITHYTQQRDTLDYGIDGVVVKV 298

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +   LQ  LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV + G 
Sbjct: 299 NALDLQLDLGNTVKIPRWAIAYKFPPEEALTTVRDIEWTVGRTGAVTPTAVMDPVQLAGT 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++  A+LHN DY   L+A G        IR+GD V + +AG++IP+V  +I  +R  D+ 
Sbjct: 359 VVKRASLHNPDY---LNAKG--------IRIGDTVTLHKAGDIIPEVGQVIEEKRSIDSV 407

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+  P  CP CQS +V       G++  A RC     CSAQ  ERL HF SR+A NI+G+
Sbjct: 408 PYVIPVMCPACQSELVH----IEGEV--ALRCINPF-CSAQIQERLTHFASRNAMNIDGM 460

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +    K+      I+  A I+ L+  Q  S  K      F + S  NL+++I + +
Sbjct: 461 GPRVIAQLLKNN----LIQDVASIYALKEEQLLSLDK------FKEKSANNLFNAIQQSK 510

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SLER +F LGIR VGA+ A+ +AK +          +  IA           +  +G 
Sbjct: 511 QNSLERLLFGLGIRMVGAKAAKLIAKKFKDLTQLMHTTSADIAS----------IDGIGS 560

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIE------NKKLVFTGTLQ 659
            IA ++V+F+  P+    V+ L+     + G + K +S  EI+       KK+V TG L+
Sbjct: 561 TIADSMVQFFSTPQAQQLVQDLM-----AAGVNGKYLSDVEIDENSFFFGKKIVLTGKLE 615

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           ++ R    +++   GA V   +S KTD++I G + GSKL+KA  LG+ +  E+QF+
Sbjct: 616 QMSRPVIAKWLENHGASVVGSVSAKTDLVIAGHSAGSKLDKATGLGIPVWQEQQFI 671


>gi|218439827|ref|YP_002378156.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424]
 gi|254781306|sp|B7K8U0|DNLJ_CYAP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218172555|gb|ACK71288.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424]
          Length = 678

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 246/722 (34%), Positives = 387/722 (53%), Gaps = 58/722 (8%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +P     I+Q   +L S  Q+ SY    YY    PI+ D  YD L R    I   +P+L 
Sbjct: 1   MPSATPEIKQRVDQLRSQLQKASY---AYYVLDNPIMEDVVYDQLYRELQNIETQYPELI 57

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK--KDDN 124
               P+ P  ++G +++     V H+IP  SLE  +N+++  ++  R    WQ+   D  
Sbjct: 58  ---TPDSPTQRVGDKLSEQFISVNHNIPLYSLENAFNLQEFARWQER----WQRLTPDVT 110

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
              +  E KIDG+ I + YE G  V    RGDG  GE+++  I+ I +IP  L+L+ P +
Sbjct: 111 QFEYVCELKIDGSAIALTYENGLLVRGVTRGDGIVGEEITPNIKTIRSIPLKLALDNPPV 170

Query: 185 -IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHG 242
            IEVRGE ++   +F  +N E    G   +ANPRNAA+G LR+L+P  + R  L FF + 
Sbjct: 171 RIEVRGEAFLPIEEFERINQEKQTAGESLFANPRNAAAGTLRQLDPRIVDRRRLQFFAYT 230

Query: 243 LGKT-SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           L    S      Q+E L+ ++ +GF VN   +   +   +  YY    + R  LPY  DG
Sbjct: 231 LYVIDSPSTPTTQWESLEDLQQMGFLVNPNRKLCQSEAEVDQYYQLWDTERHNLPYMTDG 290

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K++++ LQ+QLG   + PRW I+ K+  ++A T++ +I + +GRTG +TP+A +EPV
Sbjct: 291 VVVKLNDYQLQQQLGFTQKFPRWAIALKYPAEEAPTQVKNITVNVGRTGAVTPMAIMEPV 350

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  ATLHN D +  L           DIRVGD V++++AGE+IP+VV +I   R
Sbjct: 351 QLAGTTVQKATLHNSDRVAQL-----------DIRVGDTVIIRKAGEIIPEVVRVIEELR 399

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P+ QP+  P+ CP C S +VR   PK G+  A  RC    +C A     L H+ SRDA 
Sbjct: 400 PPNTQPYQMPTQCPECHSTLVR---PK-GE--AVTRCVNS-SCPAILRGSLVHWCSRDAL 452

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I GLG++ +       D      I AD++ L+  Q      I ++   G  S  NL ++
Sbjct: 453 DIRGLGEKVVILLI---DNGLVHSI-ADLYHLKVEQ------IASLERMGTKSANNLINA 502

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           INK +     R ++ LGIR+VG+  A+ L+  + S +  +Q            + SL  V
Sbjct: 503 INKSKQQPWSRVLYGLGIRYVGSVTAKLLSDNFKSVEQLSQA----------SFTSLESV 552

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTG 656
             +G  IAQ++ ++++   N   ++ L +     E      ++    S+ +  K +V TG
Sbjct: 553 YGIGAEIAQSVYDWFKIEANQTLIKNLQQAELQFETLSETPKYPPISSTPLAGKTVVITG 612

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R++AQE + + G  V+  +S KTD ++VG++ GSKL KAQQLG+  ++EEQ L 
Sbjct: 613 TLPSLKRNEAQELIEKAGGKVTNSVSSKTDYLLVGEDAGSKLTKAQQLGISQLSEEQLLK 672

Query: 717 LL 718
           ++
Sbjct: 673 MI 674


>gi|257865964|ref|ZP_05645617.1| DNA ligase [Enterococcus casseliflavus EC30]
 gi|257872297|ref|ZP_05651950.1| DNA ligase [Enterococcus casseliflavus EC10]
 gi|257799898|gb|EEV28950.1| DNA ligase [Enterococcus casseliflavus EC30]
 gi|257806461|gb|EEV35283.1| DNA ligase [Enterococcus casseliflavus EC10]
          Length = 676

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 250/715 (34%), Positives = 391/715 (54%), Gaps = 65/715 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q+R E   L  +++ +   YY   +P + D  YD L      I   +P L  +ED   P 
Sbjct: 9   QSRAE--ELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIETNYPQLV-TED--SPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +     KVTH IP  SL  +++ E +  F  R+    QK    ++ +  E KID
Sbjct: 64  QRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARV----QKALGKAVDYVCELKID 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I+++YE+G+FV  A RGDG  GE+++  ++ + +IP  L L  P  +EVRGE Y+ K
Sbjct: 120 GLSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIP--LKLKEPISLEVRGECYMPK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG 253
             FL LN +    G + +ANPRNAA+G LR+L+ T I   R L+ F++ L     I A  
Sbjct: 178 ASFLKLNQQREEEGAEVFANPRNAAAGSLRQLD-TRIAAQRNLSTFLYTLADFGPIEAND 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+  L ++  LGF  N+  R  +T   + +Y  E    RS LPY+IDG+V KV+ F  Q 
Sbjct: 237 QFSALNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPYEIDGVVIKVNNFKDQD 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   ++PRW  ++KF  ++A T +  I+  +GRTG++TP A + PV + G  ++ A+L
Sbjct: 297 ALGFTVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D+IK            +DIR+GD V++ +AG++IP+V  ++  +R   +Q F  P+ 
Sbjct: 357 HNVDFIK-----------MKDIRIGDSVIIYKAGDIIPEVAKVLEEKRTEASQSFESPTH 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S ++  L+ +      A RC     C AQ  E L HFVSR+A NI+GLG + L+ 
Sbjct: 406 CPECGSELIH-LDEEV-----ALRCINP-KCPAQIKEGLSHFVSRNAMNIDGLGPRVLEQ 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F   D +  ++  AD++ L   Q  +  KI+      + S  NL  +I++ +  S+ER 
Sbjct: 459 MF---DKSL-VKDVADLYFLTEEQLLTLDKIK------EKSANNLLRAIHQSKGNSVERL 508

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF LGIRHVGA+ AR LA+++           ++ A +      +I +  +G  IA+++V
Sbjct: 509 IFGLGIRHVGAKAARILAEHF----------GDLRALSKAKEEEIISLEAIGATIAESVV 558

Query: 614 EFYQNPRNICAVEALLKEVSPS------IG-RHEK--NVSSEIENKKLVFTGTLQKIQRH 664
            ++ N      V  LL E+  +      +G R+E+  +V S  + K +V TG L    R 
Sbjct: 559 TYFDNQE----VHDLLDELERAGVNFAYLGLRNEQLEDVESPFKEKTVVLTGKLSHFTRE 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+E +  LG  V+  +S+KTDI++ G+  GSKL KAQ LGV + +E Q +  ++
Sbjct: 615 EAKERIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTVWDEAQMVAAIE 669


>gi|257869253|ref|ZP_05648906.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2]
 gi|257803417|gb|EEV32239.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2]
          Length = 676

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/723 (33%), Positives = 391/723 (54%), Gaps = 64/723 (8%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + +  ++Q  +EL +   + +Y    YY   +P + D  YD L +    +   +P L 
Sbjct: 1   MAVPSTEVQQRAEELRTTLNQYAYE---YYVKDQPSVEDYVYDRLYKELVQLETDYPQLV 57

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
            +ED   P  ++GG +     KV H IP  SL  +++ E++  F  R+    QK    ++
Sbjct: 58  -TED--SPTQRVGGIVLPGFEKVIHDIPLYSLNDVFDKEEIIAFDARV----QKALGRAV 110

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +  E KIDG  I+++YE G+FV  A RGDG  GE+++  ++ + +IP  L L  P  +E
Sbjct: 111 DYVCELKIDGLSISLKYENGRFVRGATRGDGTVGENITENLKTVKSIP--LKLKEPVSLE 168

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           VRGE Y+ K  F+ LN      G + +ANPRNAA+G LR+L+     +R L+ F++ L  
Sbjct: 169 VRGECYMPKASFIRLNQVREEEGLEVFANPRNAAAGSLRQLDTRIAASRNLSTFLYTLAD 228

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              I A  Q+  L ++  LGF  N+  R   T   + +Y  E    RS LPY+IDG+V K
Sbjct: 229 FGPIEAHDQFSALDELDSLGFRTNHERRLCRTIDEVWAYIEEFHEKRSELPYEIDGVVIK 288

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++FS Q  LG   ++PRW  ++KF  ++A T + +I+  +GRTG++TP A + PV + G
Sbjct: 289 VNDFSDQDTLGFTVKAPRWAAAYKFPPEEAETTIEEIEWTVGRTGVVTPTAVMTPVRVAG 348

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A+LHN DYI+            +DIR+ D V++ +AG++IP+V +++ ++R   +
Sbjct: 349 TTVSRASLHNVDYIR-----------AKDIRLNDSVIIYKAGDIIPEVANVLTDKRSKAS 397

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P+  P+ CPIC S +V  L+ +      A RC     C AQ  E L HFVSR+A NIEG
Sbjct: 398 EPYPIPTHCPICDSELVH-LDEEV-----ALRCINP-KCPAQMKEGLSHFVSRNAMNIEG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + L+  ++       +   AD++ L   Q  +  KI+      + S  N+  +I   
Sbjct: 451 LGPRVLEQMYEKH----LVADVADLYYLTEEQLLTLDKIK------EKSANNILSAIEAS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  S+ER IF LGIRHVG++ AR LA++Y + +N ++           D   ++ +  +G
Sbjct: 501 KENSVERLIFGLGIRHVGSKAARILAEHYRNLRNLSKA----------DESEIVSLETIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVS---SEIENKKLVFTG 656
             IA ++V ++ N      V  LL E+  +      +G   + +S   S  + K +V TG
Sbjct: 551 QTIADSVVTYFNNEE----VHDLLDELEKAGVNFDYLGLKNEELSAIDSPFKGKTVVLTG 606

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L    R +A+E +  LG  V+  +S+KTDI++ G+  GSKL KAQ LG+ +  E Q + 
Sbjct: 607 KLTHFTREEAKERIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGITVWEENQMVA 666

Query: 717 LLQ 719
            ++
Sbjct: 667 AIE 669


>gi|110597868|ref|ZP_01386151.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031]
 gi|110340593|gb|EAT59076.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031]
          Length = 674

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/715 (33%), Positives = 380/715 (53%), Gaps = 60/715 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A +E+  L +EI  H+  YYQ +KP I D ++D L  +  A+   FPDL     P+ P  
Sbjct: 7   ASEEILRLRREIERHNRLYYQEAKPEISDYDFDLLLEQLVALEQQFPDLV---TPDSPSQ 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG +      V H  P LSL   ++ E++ +F  R+ +    +         E K DG
Sbjct: 64  RVGGTITKEFTAVRHREPMLSLSNTYSPEEVEEFCNRLRKLLLLEGVQEQEMVAELKFDG 123

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-------EIIEVRG 189
             +T+ Y     V  A RGDG  G++++  ++ I TIP  L  ++          IEVRG
Sbjct: 124 VAVTLLYRDALLVQGATRGDGVQGDNITVNLKTIATIPLRLEGSLAGELQGEGREIEVRG 183

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLG- 244
           EVY+ K DF  LN+      R  +ANPRNA +G L+  +  ++ R    ++ +++ GLG 
Sbjct: 184 EVYMPKLDFEHLNETRPEEDR--FANPRNATAGTLKLQDSAEVARRRLSFVAYYLKGLGD 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +T+  F++     L+ +  LGF      R     + I  +  E    R  LPY+ DG+V 
Sbjct: 242 ETASHFSR-----LKMLERLGFHTGGHYRLCREQNEINRFIEEWTERRWKLPYETDGVVL 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+++  L  ++G  A+SPRW I++K+  +QA+T LLD+  Q+GR G +TPVA L+PV + 
Sbjct: 297 KLNDVRLWDKIGATAKSPRWAIAYKYPAQQAATELLDVLFQVGRLGTITPVAELKPVLLA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ ++ +TLHN D I+ L            + V DRV++++AGEVIPKV+ +++ ER  D
Sbjct: 357 GSTVSRSTLHNFDEIERL-----------GLMVHDRVVIEKAGEVIPKVISVVLAERPVD 405

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P + P  CP C + + +  N        +  C     C AQ   RL HF SR+A +I+
Sbjct: 406 AEPIAVPVVCPECNTPLEKPENE------VSWYCPNEAECPAQIRGRLLHFASRNAMDIK 459

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
            LGK  +D     +     +R   D++ LQ  Q      +EN+   G  S  NL  ++ +
Sbjct: 460 TLGKALVDQLVGMK----LVRDVGDLYLLQEPQ------LENLERMGRKSAQNLVRALAE 509

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R  S ER +++LGIRHVG   AR L+  Y S         +++   +++ LS   VP V
Sbjct: 510 SREKSYERLLYALGIRHVGRATARELSAAYPSL--------DLLRQASEEELST--VPDV 559

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G I+A++IV+F+  P +    E L +  V  S     + V+   E   ++FTG L++  R
Sbjct: 560 GPIVARSIVDFFAKPSSAALFETLREAGVQVSAAGKPEQVNRNFEGISVIFTGGLERYDR 619

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            KA E V + G  V   +S+KT +++ G +PGSKLEKA +LGV+++ E++F  +L
Sbjct: 620 QKATELVIERGGRVVGSVSKKTGLVVAGHDPGSKLEKALKLGVRVVTEDEFDAML 674


>gi|323341293|ref|ZP_08081538.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644]
 gi|323091287|gb|EFZ33914.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644]
          Length = 671

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/720 (32%), Positives = 400/720 (55%), Gaps = 67/720 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A+KEL SL ++++     YY    P + D  YD   +R   +   FP+L   + P+  
Sbjct: 4   EEAKKELESLREKLTKWSREYYVLDAPTVEDHVYDENYKRLLELEAKFPELVTKDSPS-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG++  +  KV H IP LSL  +++ E+L  F+ R+     +       +  E KI
Sbjct: 62  -QRVGGKILTNFTKVEHEIPMLSLGDVFSKEELADFVKRL----NENAGADFGYNCELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++ YE G FV  + RG+G  GED++  ++ I  +P  L LN    +EVRGE Y+ 
Sbjct: 117 DGLAISLTYEDGIFVKGSTRGNGTIGEDITENLKTINAVP--LKLNEKISVEVRGECYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252
           K  F+ LN +  A G+  +ANPRNAA+G LR+L+ + IT  R L+ F++ L +  +   K
Sbjct: 175 KKSFVDLNKKREAEGQPVFANPRNAAAGSLRQLD-SKITAERNLSIFIYYLMEPEKFGVK 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+KM   GF VN   R  +T   I +Y +E ++ R+ L YDIDG+V K + F++ 
Sbjct: 234 TQSEALKKMASWGFRVNGESRVCSTMDEIDAYLDEYQAKRAGLEYDIDGIVLKAEPFTVH 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + +G   + PRW I++KF   +  T + DI+  +GRTG++TP A ++PV + G  ++ A+
Sbjct: 294 ELVGNTVKVPRWAIAYKFPPDEQETIVRDIEWTVGRTGVVTPTAVMDPVLLAGTTVSRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DY+             + IR+ D V + +AG++IP++ ++++ +R  D++P+  P+
Sbjct: 354 LHNPDYL-----------NEKGIRLLDTVKLHKAGDIIPEISEVVLEKRPEDSKPYEIPT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C +++V  L+ +     AA RC     C A   E L HF S++A NI+GLG + ++
Sbjct: 403 NCPECDAKLVH-LDDE-----AALRCINP-KCKALMKESLTHFASKNAMNIDGLGPKIIE 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F+       I   +D++ L         K +      + S +NL ++I+  R  SLER
Sbjct: 456 QLFER----GMINDVSDLYKLTFDDLLLLDKFK------EKSASNLLNAIDASRKNSLER 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRHVGA+ A+ LA+ +++    A+     I          + +  +G+ IA ++
Sbjct: 506 LLFGLGIRHVGAKAAKLLAERFMTMDALAKASKEEI----------VAIETMGETIADSL 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENK---------KLVFTGTLQK 660
             ++    N      LL+E+  S+G    +    ++E+E            +V TGTL++
Sbjct: 556 STYF----NSEGANELLEELK-SVGVNMSYLGKTAAELEEAASGSAFNGLTVVLTGTLER 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++R  A++++ + GA V+  +++KT+++I G + GSKL KA++LG KIMNEE+FL  +++
Sbjct: 611 LKRSDAKKWLEEHGAKVTGSVTKKTNLLICGHDAGSKLTKAKELGTKIMNEEEFLQKMEE 670


>gi|59800688|ref|YP_207400.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090]
 gi|75356380|sp|Q5F9Z9|DNLJ_NEIG1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|59717583|gb|AAW88988.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090]
          Length = 823

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 275/844 (32%), Positives = 413/844 (48%), Gaps = 176/844 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P I D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 10  ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EPK
Sbjct: 64  GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N+PE+IEVRGEV 
Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEVRGEVL 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEI 249
           + K DF ALN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    +
Sbjct: 184 MLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGL 242

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + NG      F  I   +++Y  M+  R  LPY+IDG V KV
Sbjct: 243 IAEEHIQELAYFQALGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 301 NSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I   R     
Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 465

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519

Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549
             TLQ+ ++T+     EN  G      GD+S                N+   I   +   
Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579

Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577
           L RF+F+LGIRHVG                                  +ARS+A ++   
Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615
           +  A  I+ ++A         + +P                  + +  AQA+ E      
Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698

Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654
                       +Q  R+     ALL+ +       PS     +    ++  +  K  V 
Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + 
Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGETAGSKLEKANALGVSVLSEAEL 818

Query: 715 LFLL 718
           L LL
Sbjct: 819 LTLL 822


>gi|332880018|ref|ZP_08447702.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682014|gb|EGJ54927.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 663

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/706 (33%), Positives = 374/706 (52%), Gaps = 51/706 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E++ H+  YY    P I D E+D   +   A+  A P+     D N P  +
Sbjct: 2   KEKIQQLREELNQHNYNYYVLDTPTISDFEFDQKLKELQALEQAHPEYY---DENSPTVR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +   V H     SL+  ++ EDL ++  RI +       + I FT E K DG 
Sbjct: 59  VGGTITKNFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTL---GSDQINFTCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + YE GK   A  RGDG  G+D++A +R I ++P  L  + PE   +RGE+ + K  
Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIGSVPLQLKGDYPERFYIRGEIVMPKKA 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN E +A G  P+ NPRN ASG L+  +  ++  R L+  ++ L   + I  K Q+E
Sbjct: 176 FEALNKERVAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGDTGI--KSQFE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V N  +  ++   ++ + NE  S R TLPY+ DG+V KVD  + Q++LG
Sbjct: 234 GLEKARAWGFKVPNISKLCHSTAEVMDFINEWDSKRHTLPYETDGVVVKVDSIAQQEELG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  +Q  T L  I  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTLLESISYQVGRTGAITPVANLQPVLLAGTIVKRASLHNA 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DI +GD V V++ GE+IPK+V + + +R  +A+   + + CP 
Sbjct: 354 DQIEKL-----------DIHIGDSVYVEKGGEIIPKIVGVNLEKREANAEKVQYITHCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR+         A H C    +C  Q   +++HF+SR A +IEGLG++ ++  F+
Sbjct: 403 CGTALVRNEGE------AQHYCPNSNSCPPQITGKIQHFISRKAMDIEGLGEETVELLFR 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I   AD++      + +  K+  +      S  N+   I K + I  ER +F+
Sbjct: 457 ----AGIIHTYADLY------EVTVAKLLPLERMAQKSAENIVKGIEKSKEIPFERVLFA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LA++Y + +  A E   I          LI V  +G+ IA ++V F+
Sbjct: 507 LGIRYVGETVAKKLARHYKTIE--ALEAATI--------EQLIEVDEIGNQIASSVVSFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEYVTQL 673
            +  N   +E  LK         E+    + +  K    V +G      R + +  + Q 
Sbjct: 557 ADAYNRALIER-LKGYGLQFALSEQATEGQTDKLKGLTFVVSGVFHLHSRDELKTLIEQH 615

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G  V + +S KT  +IVGDN G SK EKA+ LGVK+++EE+F  L+
Sbjct: 616 GGKVGSSISSKTSYVIVGDNMGPSKKEKAESLGVKMISEEEFEALI 661


>gi|328887795|emb|CAJ70206.2| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Clostridium
           difficile]
          Length = 674

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/707 (32%), Positives = 387/707 (54%), Gaps = 52/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N
Sbjct: 3   VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTN 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E KIDG
Sbjct: 60  RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK+
Sbjct: 116 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 173

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           +F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E   +   
Sbjct: 174 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHS 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++
Sbjct: 234 ESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEM 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHN
Sbjct: 294 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 353

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP
Sbjct: 354 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    +R      G+  AA +C   ++C AQ    + HFVSRDA NI+GLG+  +    
Sbjct: 403 VCSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 455

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                    +I  D+  L   ++     +E +   G+ S  NL +SI K +   L R I 
Sbjct: 456 NE-------KIIQDVSDLYYIKKEDVVDLERM---GEKSADNLINSIEKSKENDLWRLIN 505

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI+ +G + A+ LA       NF ++++ +I+  ++    L  +   G I+A ++VEF
Sbjct: 506 GLGIKFIGVKAAKILA------YNF-KDLDEVISATSE---QLEELEEFGSIMANSVVEF 555

Query: 616 YQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++  +N+  +   LK V   + S+    + V    E  K+V TGTL  ++R+ A+E + +
Sbjct: 556 FKEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKEMIEK 614

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 615 RGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 661


>gi|325137931|gb|EGC60506.1| DNA ligase, NAD-dependent [Neisseria meningitidis ES14902]
          Length = 841

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 268/825 (32%), Positives = 405/825 (49%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D     + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF ALN     
Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y +M+  R  LPY+IDG+V KV+  + Q++LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D +  
Sbjct: 338 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                      +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++T+  T 
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556

Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562
              + +     SV               N+   I   +   L RF+F+LGIRHV      
Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPELARFLFALGIRHVGERTAK 616

Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                     G  +ARS+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675

Query: 597 SLIRVP-----------------LVGDIIAQAIVEF-----------------YQNPRNI 622
             + +P                  + +  AQA+ E                  +Q  R+ 
Sbjct: 676 QAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEGLQTDKALPTDWQAWRSE 735

Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
               ALL+ +       PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840


>gi|269216606|ref|ZP_06160460.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122]
 gi|269130135|gb|EEZ61217.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122]
          Length = 709

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 246/728 (33%), Positives = 388/728 (53%), Gaps = 58/728 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +AL  +  R  + +L +EI +H   YY    P I D+ +D+L R    +  A P+L    
Sbjct: 12  QALDADGTRARVRALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELRELEQAHPELI--- 68

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           DP  P  ++GG +      V H++   SL+    +E+L +++ R      +   + + F 
Sbjct: 69  DPTSPTQRVGGYVGEQFSPVRHAVRMYSLDNAMGLEELDEWLARTV----EAIGHPVPFC 124

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------SLNIPE 183
            E KIDG+ I + YE G    AA RGDG +GEDV+  +R +  IP  L       L  P+
Sbjct: 125 CELKIDGSSIALTYEAGVLTKAATRGDGTTGEDVTVNMRTVRDIPLRLRDAGIEGLVDPD 184

Query: 184 I-IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFV 240
             IEVRGEVY+ K  F +LN    A GR+ +ANPRNAA+G LR+ +PT +T  R L+ F+
Sbjct: 185 ASIEVRGEVYMPKRSFESLNAAAAAQGRQGFANPRNAAAGSLRQKDPT-VTQGRDLSTFL 243

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           + +   + + A+ Q+++L+ +   GF VN  V++ +T   +  +  E+   R +LPY ID
Sbjct: 244 YAIADDAPVRAESQWDLLKWLGDCGFHVNPDVKRCDTPEEVHRFCEEVADRRDSLPYGID 303

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVD F++Q+++G  AR+PRW I++KF  ++ +T L DI +Q+GRTG +TPVA L+P
Sbjct: 304 GVVVKVDSFAIQREMGFTARAPRWAIAYKFPPEEKTTVLRDISVQVGRTGAITPVAELDP 363

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+++  ATLHN D         +V R  +D+RVGD ++V++AG+VIP+V+  +++ 
Sbjct: 364 VRVDGSVVARATLHNLD---------EVHR--KDVRVGDTIIVRKAGDVIPEVLGPVLSL 412

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R   A P+  P+ CP C S +VR+         AA RC   + C AQ  ERL H+ SR A
Sbjct: 413 RPEGAIPWEMPAMCPSCGSPLVREDGE------AAFRCV-SIDCPAQATERLIHWASRGA 465

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-----TTKIENILGFGDVSV 535
            +I+G+G++ +    +S      +   AD ++L      +     T K    +  G    
Sbjct: 466 MDIDGMGEEIVARLVES----GRLTDVADYYSLSEYDLATLETGRTNKEGEPVHLGSTIA 521

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
             L  SI   +     R +F LGIRHVG      +A  Y S       ++ ++  + +D 
Sbjct: 522 AKLIASIEASKARPFGRVLFGLGIRHVGKTTGAQIAAAYPS-------MDALMRASEED- 573

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLV 653
             L  +  VG IIA++I  F + P N   +  L  L      +    ++V   +     V
Sbjct: 574 --LAAIDGVGGIIAKSIRAFLETPDNREVIHRLGVLGVRMEDVRTEGEDVPQTLAGITFV 631

Query: 654 FTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            TG+L    + R +A   +  +GA VS  +S+KT  +I G+  GSK +KA  LGV +++E
Sbjct: 632 LTGSLVESGMTRDEAGSRLKAMGAKVSGSVSKKTGYVIAGEAAGSKYDKAVALGVPVLSE 691

Query: 712 EQFLFLLQ 719
              L LL+
Sbjct: 692 ADLLRLLE 699


>gi|149928191|ref|ZP_01916436.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
 gi|149823082|gb|EDM82322.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
          Length = 597

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/545 (39%), Positives = 320/545 (58%), Gaps = 34/545 (6%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P + DSEYD + R    I +  P+L +++ P     ++GG+      +V H +
Sbjct: 40  AYYVLDAPEVPDSEYDKVYRSLQQIENNHPELIQNDSPT---QRVGGKPADGFEQVRHRV 96

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL   +   D+  F  R+        D +I + ++PK DG  I+I Y  G F  A  
Sbjct: 97  PMLSLGNAFEDSDVLAFDRRVKELADLPIDTTIAYAVDPKFDGLAISIHYTNGMFDQAIT 156

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDG  GEDVSA ++ I ++P  L  ++ P  +E+RGE++++K DFL +N     +G K 
Sbjct: 157 RGDGTVGEDVSANVKTIRSLPLKLKGSVVPAHLEIRGEIFMTKKDFLQMNQRQAELGLKV 216

Query: 213 YANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF--AKGQYEMLQKMRCLGFPVN 269
           +ANPRNAA+G +R+L+P    +R L F+ +G     E     K Q  M++ +  LG PV+
Sbjct: 217 FANPRNAAAGTIRQLDPKVAASRPLRFYCYGAALEREQLRELKSQSAMMKWLAALGLPVS 276

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
              + A    G++S+Y  +   RSTLP++IDG+VYKVD F LQ QLG  A++PR+ ++HK
Sbjct: 277 ELSQTATGAEGLLSFYRSVGGRRSTLPFEIDGVVYKVDSFDLQDQLGYVAKAPRFAVAHK 336

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           F   +  +RLL+I++Q+GRTG +TPVA+LEPV +GG ++++ATLHN D I+         
Sbjct: 337 FPPDEVLSRLLNIEVQVGRTGSITPVAKLEPVKVGGVVVSSATLHNLDEIQ--------- 387

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
              +D+RVGD+VLV+RAG+VIP+V+    N+R P +  F  P+ CPIC S V ++     
Sbjct: 388 --RKDLRVGDQVLVRRAGDVIPEVLPFPGNQRSPVSSAFVMPTHCPICNSLVRKEEGE-- 443

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
               AA RCTGGL C AQ  + + HF  R A +IEGLG + ++     E     ++ PAD
Sbjct: 444 ----AAFRCTGGLVCKAQLTQSIIHFAHRRAIDIEGLGSKLVEVLVDKE----WVKTPAD 495

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
           +F L+     +  ++E +   GD S  NL DSI+K +  +  RF+F LGIRHVG   AR 
Sbjct: 496 LFRLEF---DALVQLERM---GDKSARNLLDSIDKAKQTTFGRFLFGLGIRHVGEATARD 549

Query: 570 LAKYY 574
           LA Y+
Sbjct: 550 LAAYF 554


>gi|240115079|ref|ZP_04729141.1| putative DNA ligase [Neisseria gonorrhoeae PID18]
 gi|240125172|ref|ZP_04738058.1| putative DNA ligase [Neisseria gonorrhoeae SK-92-679]
 gi|240127627|ref|ZP_04740288.1| putative DNA ligase [Neisseria gonorrhoeae SK-93-1035]
          Length = 823

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 275/844 (32%), Positives = 413/844 (48%), Gaps = 176/844 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P I D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 10  ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EPK
Sbjct: 64  GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N+PE+IEVRGEV 
Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEVRGEVL 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEI 249
           + K DF ALN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    +
Sbjct: 184 MLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGL 242

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + NG      F  I   +++Y  M+  R  LPY+IDG V KV
Sbjct: 243 IAEEHIQELAYFQALGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 301 NSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I   R     
Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 465

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519

Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549
             TLQ+ ++T+     EN  G      GD+S                N+   I   +   
Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579

Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577
           L RF+F+LGIRHVG                                  +ARS+A ++   
Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615
           +  A  I+ ++A         + +P                  + +  AQA+ E      
Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698

Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654
                       +Q  R+     ALL+ +       PS     +    ++  +  K  V 
Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + 
Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 818

Query: 715 LFLL 718
           L LL
Sbjct: 819 LTLL 822


>gi|268594283|ref|ZP_06128450.1| DNA ligase [Neisseria gonorrhoeae 35/02]
 gi|268547672|gb|EEZ43090.1| DNA ligase [Neisseria gonorrhoeae 35/02]
          Length = 827

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 275/844 (32%), Positives = 414/844 (49%), Gaps = 176/844 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P I D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 14  ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 67

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EPK
Sbjct: 68  GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 127

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N+PE+IEVRGEV 
Sbjct: 128 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEVRGEVL 187

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K DF  LN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F
Sbjct: 188 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 246

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV
Sbjct: 247 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVVKV 304

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 305 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 364

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I   R     
Sbjct: 365 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 413

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 414 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 469

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 470 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 523

Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549
             TLQ+ ++T+     EN  G      GD+S                N+   I   +   
Sbjct: 524 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 583

Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577
           L RF+F+LGIRHVG                                  +ARS+A ++   
Sbjct: 584 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 643

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615
           +  A  I+ ++A         + +P                  + +  AQA+ E      
Sbjct: 644 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 702

Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654
                       +Q  R+     ALL+ +       PS     +    ++  +  K  V 
Sbjct: 703 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 762

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + 
Sbjct: 763 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 822

Query: 715 LFLL 718
           L LL
Sbjct: 823 LTLL 826


>gi|325288902|ref|YP_004265083.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964303|gb|ADY55082.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271]
          Length = 671

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 250/700 (35%), Positives = 368/700 (52%), Gaps = 59/700 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q  + L+ L+ +I   D  YY    P I D EYD L R    I  A P+      P+ P 
Sbjct: 10  QGPERLNQLKTQIEEADYRYYVLDDPQITDKEYDLLMRELVEIEGAHPEWV---SPDSPS 66

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG  +    KV H  P LSL+  +  E+L +F  R+       +     + +E KID
Sbjct: 67  QRVGGGPSAQFAKVRHREPLLSLDNAFGREELAEFDRRVRGVVPDAE-----YVVELKID 121

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  + + YE+G    AA RGDG +GE+++A +R I ++P  L S      +++RGE Y+ 
Sbjct: 122 GLTVALTYEEGILTRAATRGDGETGEEITANVRTIKSVPLSLRSRPAAGRLDIRGEGYLP 181

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252
           K  F+ LN E    G+  +ANPRNA +G LR+L+ + IT  R L +F + L +  +I  K
Sbjct: 182 KESFVRLNREREEEGQPLFANPRNAGAGSLRQLD-SRITAGRKLGYFAYQLIQAEQIGLK 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+LQ ++  GF VN+  +  +    ++ Y  EM   R  LPY+IDGLV KV+ F  Q
Sbjct: 241 TQAEVLQTLKEWGFQVNDSYKIFSKMEKVMEYCQEMTEERHQLPYEIDGLVIKVNRFDQQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  A+SPRW I++KF  +Q  T +  IDI +GRTG+LTP A ++ V + G+ +  AT
Sbjct: 301 RELGFTAKSPRWAIAYKFPAEQVETVVKSIDINVGRTGVLTPTAIMQEVFVAGSTVARAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+            +DIR+GD VL+ +AG+VIP+++  I  +R      F+ P 
Sbjct: 361 LHNLDNIR-----------EKDIRIGDHVLLHKAGDVIPEIIKSIPEKRTGREMIFAMPE 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---- 488
            CP C S VVR      G+  AA+RC   ++C A+Q E L HFVSRDA NIEGLG     
Sbjct: 410 SCPACDSPVVR----LEGE--AAYRCQ-NISCPARQREALFHFVSRDAMNIEGLGPAIIV 462

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           Q LD           I   A ++ L+  Q      +EN+   G  S  NL  +I   +  
Sbjct: 463 QLLDKGL--------IDDAAGLYDLRHEQ------LENLERMGKKSADNLIKAIEASKTR 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L   IF+LGIR+VG +  R LA+ Y S +   +   +           L  VP +G I+
Sbjct: 509 GLAPLIFALGIRNVGIKAGRVLAQKYGSMEKLQEAGED----------ELCEVPDIGGIM 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A +I  F+++  N   +  L K     +    +  S     + +V TGTL+   R + +E
Sbjct: 559 AASITSFFRDRANRDFIRRLQK-AGVRMTDSRQASSRLFAGQSIVVTGTLRSWDRREIEE 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            +   G   SA +S+KT  ++ G+NPGSK +KAQ LGV +
Sbjct: 618 LIETNGGKASASVSKKTSFVLCGENPGSKADKAQALGVPV 657


>gi|289450450|ref|YP_003474988.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184997|gb|ADC91422.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 758

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/702 (33%), Positives = 382/702 (54%), Gaps = 52/702 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E++ L  E+++H++ YY    PII D  YDA+ RR + +  A P+   ++ P     K+
Sbjct: 94  REITELRAELNFHNNLYYVEDSPIISDYSYDAMLRRLEELETAHPEYMTTDSPT---VKV 150

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG  +    K+TH +P  SL  +++ E+L++ + R+    Q++        +E KIDG  
Sbjct: 151 GGRASEKFRKLTHIVPMQSLRDVFSREELQEAVERM----QEQLPVGAELVVEEKIDGLS 206

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ YE G FV  + RGDG  GE+++  ++ I ++P  L   +P  +EVR E+Y++K +F
Sbjct: 207 VSLEYENGVFVRGSTRGDGLVGEEITENLKQIKSLPLKLQKPLP-YLEVRAEIYLNKENF 265

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQYE 256
            ALN   +A G KP+ANPRNAA+G LR+L+P  ITR   L+FF   + +   I      E
Sbjct: 266 AALNKAQLAAGLKPFANPRNAAAGSLRQLDPR-ITRDRNLSFFAFNIQRVEGITFTTHDE 324

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +   GFPV       + F  I     ++ + R++LPY IDG V K++    +++LG
Sbjct: 325 SLFYICNEGFPVVYSSFAHSDFAKIWECVEKIATRRASLPYMIDGAVIKINNLQYREKLG 384

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++PRW +++K+  ++  T + DI +Q+GRTG +TP+A LEPV + G+ +++ATLHN 
Sbjct: 385 VTAKTPRWAVAYKYPPEEQETVVKDIKLQVGRTGKITPLAVLEPVMVDGSCVSSATLHNA 444

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIRVGD VL+ +AG+VIP +  ++++ R   A+PF  P  CP+
Sbjct: 445 DYIK-----------AKDIRVGDTVLIAKAGDVIPAIQKVVLDRRPLKAKPFVMPDKCPV 493

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  +++R    +        RC G L+C AQ   RL H V++DA +I  LG   L     
Sbjct: 494 CGEKLIRRKENEVD-----LRC-GNLSCPAQVFRRLLHMVAKDALDIADLGPAVLARL-- 545

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I   +DIF L   +     ++ N+ GF   SV NL + I K +   L+RFI +
Sbjct: 546 --QEAGLINELSDIFRLAAYR----PEMLNLPGFQQKSVDNLLNEIEKAKVKPLDRFIVA 599

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A+ LA  +            + A    D  +L+ V  +G   AQ+I++F+
Sbjct: 600 LGIDYVGVVAAKKLAVAFRK--------GGLSALAAADIETLLSVETIGQTAAQSIIDFF 651

Query: 617 QNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + P  +  ++A     +K  SP +   E+N     + K    TGTL+  +R + ++ +  
Sbjct: 652 KRPTTVALLQAWQELGVKPASPPL--IEEN--GVWQGKIFAVTGTLENYKRSEVKQLIEA 707

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            G  V+  +S K   +I G+  G KL KA++LG+ + +E  F
Sbjct: 708 RGGTVANTVSSKIFAVIAGEKAGGKLAKAKELGIPVWSETDF 749


>gi|218767787|ref|YP_002342299.1| putative DNA ligase [Neisseria meningitidis Z2491]
 gi|166216217|sp|A1IQR7|DNLJ_NEIMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121051795|emb|CAM08101.1| putative DNA ligase [Neisseria meningitidis Z2491]
 gi|319410038|emb|CBY90372.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria
           meningitidis WUE 2594]
          Length = 841

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 269/822 (32%), Positives = 406/822 (49%), Gaps = 163/822 (19%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D     + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV + K DF ALN     
Sbjct: 161 VQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRGEVLMLKADFAALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y +M+  R  LPY+IDG+V KV+  + Q++LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLTFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D +  
Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                      +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA--FSIRIPADIFTLQRRQQTS--TTKIE 525
           + L HF SR A +I+GLG++Q++    ++D    F+     DI TLQ+ ++T+  T    
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLV-AQDLVLHFADLYRLDIPTLQKMKETADKTVAES 559

Query: 526 NILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV--------- 562
           + +     SV               N+   I   +   L RF+F+LGIRHV         
Sbjct: 560 DQMPSEGSSVGASGKHKKQPVKWAENILAGIESGKTPELARFLFALGIRHVGERTAKTLA 619

Query: 563 -----------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
                                  G  +ARS+A ++   +  A  I+ ++A         +
Sbjct: 620 QAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQTQAV 678

Query: 600 RVP-----------------LVGDIIAQAI-------VEFYQN--------------PRN 621
            +P                  + +  AQA+       +E  QN              P+N
Sbjct: 679 TIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSEPQN 738

Query: 622 ICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +E L    +  PS     +    ++  +  K  V TGTL  ++R +AQ  +   G  
Sbjct: 739 AALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGK 798

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           VS  +S+KTD ++ G+  GSKLEKA  LGV I++E + L LL
Sbjct: 799 VSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840


>gi|67920947|ref|ZP_00514466.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501]
 gi|67857064|gb|EAM52304.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501]
          Length = 670

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 234/695 (33%), Positives = 381/695 (54%), Gaps = 51/695 (7%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    PI+ D+ YD L R  D +      L  S+ P     ++G +       + H+I
Sbjct: 19  AYYVLDNPIMEDAVYDQLYRELDTLEKENTHLITSDSPT---QRVGDKPASQFVSLAHNI 75

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P  SLE  +N+E+L+ +  R  R+ +K++  S  +  E KIDG+ + + YE G  +    
Sbjct: 76  PLYSLENAFNLENLQAWQKRWQRYSEKENIESAEYVCELKIDGSALALTYENGLLIRGVT 135

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDG +GED++  +R I +IP  L+L N P IIEVRGE ++  ++F  +N +    G   
Sbjct: 136 RGDGTTGEDITQNVRTIRSIPLKLNLENPPPIIEVRGEAFLPLDEFDRINQQREENGEAL 195

Query: 213 YANPRNAASGILRRLNPTDI-TRYLNFFVHGLG-KTSEIFAKGQYEMLQKMRCLGFPVNN 270
           +ANPRNAA+G LR+L+P  +  R L FF + L  +T++I    Q+E L  ++  GF VN 
Sbjct: 196 FANPRNAAAGTLRQLDPKIVDQRRLQFFAYTLHLETTDI--NSQWESLNYLQNSGFLVNT 253

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
             +   +   +  Y+ + ++ R  LPY  DG+V K++++SLQK LG   + PRW I+ K+
Sbjct: 254 HRKLCPSLEEVADYFQQWETERKDLPYMTDGVVVKINDYSLQKVLGFTQKFPRWAIALKY 313

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
             ++A T + DI + +GRTG +TP+A +EPV++ G  +  ATLHN D IK L        
Sbjct: 314 PAEEAPTIVKDIIVNVGRTGAVTPMAVMEPVHLAGTTVQKATLHNSDRIKQL-------- 365

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
              DIRVGD V++++AGE+IP+VV ++ + R P+ Q +  PS CP C S + R  N    
Sbjct: 366 ---DIRVGDTVIIRKAGEIIPEVVRVLDDLRPPNTQLYQMPSHCPECDSTLKRPPNE--- 419

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
              A  RC   L+C A     L H+ SRDA +I GLG++ +     +      +   AD+
Sbjct: 420 ---AVTRCM-NLSCGAILRGSLVHWASRDALDIRGLGEKIVILLINNG----LVNSLADL 471

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           + L      +  KI N+   G  S  NL ++I   +     R ++ LGIR+VG+  A  L
Sbjct: 472 YDL------TPEKIANLERMGSKSANNLIEAIEGSKKQPFSRVLYGLGIRYVGSVTAGLL 525

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A+ + S +  +Q            +  L  V  VG+ IAQ+I++++   +N   ++ L K
Sbjct: 526 AENFPSMEQLSQA----------SFSDLSSVYGVGEEIAQSIIDWFSIEKNCDLIQQLEK 575

Query: 631 -----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
                E + S      +  +    K  V TGTL  ++R++A+  + + G  V++ +S++T
Sbjct: 576 VGLQLEATKSKTPTVDSPLTPFAGKTFVITGTLPSLKRNEAKALIMEAGGKVTSSVSKRT 635

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           D +++G+NPGSKL +A++LG+  ++E +FL L+++
Sbjct: 636 DYLLLGENPGSKLTQAEKLGITQLSEAEFLTLVKK 670


>gi|270296700|ref|ZP_06202899.1| DNA ligase, NAD-dependent [Bacteroides sp. D20]
 gi|270272687|gb|EFA18550.1| DNA ligase, NAD-dependent [Bacteroides sp. D20]
          Length = 665

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/708 (34%), Positives = 375/708 (52%), Gaps = 54/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E+  H+  YY  + P I D E+D L R    +    P+    +D N P  +
Sbjct: 4   KEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEY---QDDNSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136
           +G ++N +  +V H  P LSL   ++  ++  F  R+     KK  N  F    E K DG
Sbjct: 61  VGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYERV-----KKALNEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL  + P+  E+RGE+ +   
Sbjct: 116 TSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPKSFEIRGEILMPWV 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N T + +R L+ +++ L    E+   G Y
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSTIVASRKLDAYLYYL-LGEELPCDGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ     GF  +   R+A++   +  Y N   + R  LP   DG+V K++    QK L
Sbjct: 235 ENLQAAASWGFKTSEHTRKAHSLEEVFEYINYWDTERKNLPVATDGIVLKINSLRQQKNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIRFEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++ L+      T  I+N+   G+ S  N+ + I   + +  ER +
Sbjct: 458 YR----LGLIKDTADLYQLK------TDDIKNLERMGEKSAENIVNGIAASKEVPFERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D   L  +  +G+ IAQ+I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSFTDIEEL----------ENADLEKLKNIDEIGEKIAQSIIT 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ NP N   VE  LK     + R E+++S    ++  + +V +G      R + +E + 
Sbjct: 558 YFSNPVNRELVER-LKSNGLQLHRTEEDLSGYTDKLAGQSIVISGVFTHHSRDEYKEMIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ G+N G +KLEKAQ+LGVKIM+E++FL L+
Sbjct: 617 KNGGKNVGSISSKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLALI 664


>gi|327480472|gb|AEA83782.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri DSM 4166]
          Length = 791

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/633 (34%), Positives = 342/633 (54%), Gaps = 49/633 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S + A + ++ L  EI  H+  YY   +P + D+EYD L     A+    P+L     P 
Sbjct: 3   SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELV---TPE 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSI 126
            P  ++GG    +  +V H +P LSL   +  +DL  F  R+             D  ++
Sbjct: 60  SPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAAV 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            ++ EPK+DG  +++ YE G  V  A RGDG +GED+SA +R +  IP ++     P ++
Sbjct: 120 EYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVL 179

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGE+Y+ K  F ALN   +  G KP+ANPRNAA+G LR+L+     +R L    +G+G
Sbjct: 180 EVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVG 239

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           ++          +L+ ++  G P++  ++ A       +YY+ + + R  LPY+IDG+V+
Sbjct: 240 RSDGELPNTHIGILEALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVF 299

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+    Q++LG RAR PRW I+HKF  ++  T LLD++ Q+GRTG +TPVARL+PV + 
Sbjct: 300 KVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVA 359

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            + +GD V+V+RAG+VIP+++ +I   R  D
Sbjct: 360 GVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQILGVIAERRPTD 408

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAA------HRCTGGLACSAQQLERLKHFVSR 478
           A+    P  CP+C S V R    K  K   +      +RC G LAC AQ  + + HFVSR
Sbjct: 409 ARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSR 468

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++      D    +R PAD++ L   Q      +  + GF ++S  NL
Sbjct: 469 RAMDIDGLGDKIVEQLV---DKGL-VRSPADLYCLTHEQ------VIELEGFAEISTRNL 518

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I+  R  SL RF+++LGI  VG E A+ LA+   S     + + ++          L
Sbjct: 519 LHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDV----------L 568

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + +P VG  +A  I  F+++  N   + ALL+E
Sbjct: 569 VYLPDVGLEVAHEIHSFFEDEHNRTVI-ALLRE 600



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 12/151 (7%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNICAVEALLKEVSP 634
           Q  A+   ++ A    DWL L +V  + +  A+++ +++   +N     A+EA L+E   
Sbjct: 639 QRLAERFGSLEAIIAADWLDLRQVERLTEKAARSLRDYFDKSENAERARAIEAQLRE--- 695

Query: 635 SIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
             G H ++     E   L     V TGTL+ + R + +  +  LGA V+  +S KT  ++
Sbjct: 696 -FGMHWESERKAAEGLPLAGQTWVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVV 754

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            G   GSKL KA + GV +++E QFL  L Q
Sbjct: 755 AGPGAGSKLTKANEFGVVVLDEAQFLERLAQ 785


>gi|268600753|ref|ZP_06134920.1| DNA ligase [Neisseria gonorrhoeae PID18]
 gi|268683767|ref|ZP_06150629.1| DNA ligase [Neisseria gonorrhoeae SK-92-679]
 gi|268686007|ref|ZP_06152869.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035]
 gi|293399617|ref|ZP_06643770.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62]
 gi|268584884|gb|EEZ49560.1| DNA ligase [Neisseria gonorrhoeae PID18]
 gi|268624051|gb|EEZ56451.1| DNA ligase [Neisseria gonorrhoeae SK-92-679]
 gi|268626291|gb|EEZ58691.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035]
 gi|291610186|gb|EFF39308.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62]
          Length = 829

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 275/844 (32%), Positives = 413/844 (48%), Gaps = 176/844 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P I D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 16  ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 69

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EPK
Sbjct: 70  GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 129

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N+PE+IEVRGEV 
Sbjct: 130 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEVRGEVL 189

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEI 249
           + K DF ALN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    +
Sbjct: 190 MLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGL 248

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + NG      F  I   +++Y  M+  R  LPY+IDG V KV
Sbjct: 249 IAEEHIQELAYFQALGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 307 NSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I   R     
Sbjct: 367 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 415

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 416 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 471

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 472 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 525

Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549
             TLQ+ ++T+     EN  G      GD+S                N+   I   +   
Sbjct: 526 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 585

Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577
           L RF+F+LGIRHVG                                  +ARS+A ++   
Sbjct: 586 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 645

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615
           +  A  I+ ++A         + +P                  + +  AQA+ E      
Sbjct: 646 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 704

Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654
                       +Q  R+     ALL+ +       PS     +    ++  +  K  V 
Sbjct: 705 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 764

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + 
Sbjct: 765 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 824

Query: 715 LFLL 718
           L LL
Sbjct: 825 LTLL 828


>gi|325133819|gb|EGC56475.1| DNA ligase, NAD-dependent [Neisseria meningitidis M13399]
          Length = 841

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 267/825 (32%), Positives = 404/825 (48%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+      P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALELNHPEFKL---PDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D  +  + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF+ALN     
Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIEVRGEVLMQKADFVALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +  + F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQDGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV+  + Q +LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D +  
Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                      +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++ +  T 
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKEAADKTV 556

Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562
              + +   D SV               N+   I   +   L RF+F+LGIRHV      
Sbjct: 557 AESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616

Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                     G  +ARS+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675

Query: 597 SLIRVPL-----------------VGDIIAQAIVEF-----------------YQNPRNI 622
             + +P                  + +  AQA+ E                  +Q  R+ 
Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKSIEGLQTDKALPTDWQAWRSE 735

Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
               ALL+ +       PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQALIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV I++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840


>gi|194097948|ref|YP_002000994.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945]
 gi|239998421|ref|ZP_04718345.1| putative DNA ligase [Neisseria gonorrhoeae 35/02]
 gi|254781380|sp|B4RJQ9|DNLJ_NEIG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193933238|gb|ACF29062.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945]
 gi|317163707|gb|ADV07248.1| putative DNA ligase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 823

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 275/844 (32%), Positives = 414/844 (49%), Gaps = 176/844 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P I D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 10  ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EPK
Sbjct: 64  GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N+PE+IEVRGEV 
Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEVRGEVL 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K DF  LN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F
Sbjct: 184 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 242

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV
Sbjct: 243 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVVKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 301 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I   R     
Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 465

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519

Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549
             TLQ+ ++T+     EN  G      GD+S                N+   I   +   
Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579

Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577
           L RF+F+LGIRHVG                                  +ARS+A ++   
Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615
           +  A  I+ ++A         + +P                  + +  AQA+ E      
Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698

Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654
                       +Q  R+     ALL+ +       PS     +    ++  +  K  V 
Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + 
Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 818

Query: 715 LFLL 718
           L LL
Sbjct: 819 LTLL 822


>gi|325110927|ref|YP_004271995.1| DNA ligase [Planctomyces brasiliensis DSM 5305]
 gi|324971195|gb|ADY61973.1| DNA ligase [Planctomyces brasiliensis DSM 5305]
          Length = 675

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/713 (32%), Positives = 372/713 (52%), Gaps = 57/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E++SL  EI  H+  YY  ++P I D E+D L  R   +    P+    + P+ P  K+
Sbjct: 7   QEIASLRDEIERHNRLYYVEAQPEITDREFDRLLNRLIDLEQQHPEF---QSPDSPTQKV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG+       V H++P LS+E ++  E + +F  RI +     D  ++ +T+E KIDG  
Sbjct: 64  GGQPIEGFQTVPHAVPMLSIENVFEPEGIDEFDRRICKLL---DRETLDYTIEYKIDGVA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           + + YE G+ + A  RGDG  G+D+++  R    +P ++   N PE++EVRGE YI+ +D
Sbjct: 121 LALVYEHGRLIRAVTRGDGQQGDDITSNARTARGVPLKLAGDNPPELLEVRGEAYIANSD 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  L  E  A G   +ANPRN+ +G L+ L+P     R + F  HG+G  S       ++
Sbjct: 181 FAVLRAEQEARGETVFANPRNSTAGALKLLDPKLSAQRKVRFVSHGIGAHSNFGVDTHFD 240

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++K+R  G P   G+R  +    +      M     TL  ++DGLV KV+  +L+++LG
Sbjct: 241 YIEKLREFGLPTTPGIRVCHGIQEVREQIEMMMDDLHTLDLEVDGLVIKVNSLALREELG 300

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW+I++K+   +A+TR+ DI IQ+G+TG LTPVA L PV I G  +T ++LHN 
Sbjct: 301 NTSKSPRWVIAYKWERYEATTRVEDIQIQVGKTGTLTPVAYLAPVEIAGTTVTRSSLHNR 360

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++ L           DIR+GD  +V++AG++IP V+ +    R    Q F FP+ CP 
Sbjct: 361 DELQRL-----------DIRIGDYAVVEKAGKIIPHVLRVERERRDGSEQEFHFPTQCPE 409

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQ+ VV+D   + G  +   RC     C A+  E L+ F SR A +I+GLG + ++    
Sbjct: 410 CQTEVVQD---EGGVYI---RCPNP-DCPARLRESLRFFASRQAMDIDGLGIKLIEQLVD 462

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L  R+     ++  +   G+ SV  +   I + +   L R +  
Sbjct: 463 ----AGLLTSLADIYRLPERRD----EMLALDRMGEKSVDKVLKGIERSKEQPLWRLLTG 514

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L IRHVG   AR LA+ + S     ++    +A  N+          +G +IA+++ EF 
Sbjct: 515 LNIRHVGTSNARILAERFGSLGQLQEQSAENLAAVNE----------IGPVIAESVYEFL 564

Query: 617 QNPRNICAVEAL---------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +      V  L          K+VSP     E+        K  V TGTL+   R +A+
Sbjct: 565 HSDFGATLVNQLADLGLNLGTAKQVSP----EEEGAELPWAGKTFVLTGTLETFTRQQAE 620

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           E +   G   S  +S+KT  ++ G   GSKLEKA++LG+ I+ E  F  +L++
Sbjct: 621 EEIRVRGGKASGSVSKKTSFVVAGAEAGSKLEKAEKLGISILTEADFTQMLEE 673


>gi|146282220|ref|YP_001172373.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri A1501]
 gi|145570425|gb|ABP79531.1| DNA ligase, NAD-dependent [Pseudomonas stutzeri A1501]
          Length = 802

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/633 (34%), Positives = 341/633 (53%), Gaps = 49/633 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S + A + ++ L  EI  H+  YY   +P + D+EYD L     A+    P+L     P 
Sbjct: 17  SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELV---TPE 73

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSI 126
            P  ++GG    +  +V H +P LSL   +  +DL  F  R+             D   +
Sbjct: 74  SPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAVV 133

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            ++ EPK+DG  +++ YE G  V  A RGDG +GED+SA +R +  IP ++     P ++
Sbjct: 134 EYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVL 193

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGE+Y+ K  F ALN   +  G KP+ANPRNAA+G LR+L+     +R L    +G+G
Sbjct: 194 EVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVG 253

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           ++          +LQ ++  G P++  ++ A       +YY+ + + R  LPY+IDG+V+
Sbjct: 254 RSDGELPDTHIGILQALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVF 313

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+    Q++LG RAR PRW I+HKF  ++  T LLD++ Q+GRTG +TPVARL+PV + 
Sbjct: 314 KVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVA 373

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            + +GD V+V+RAG+VIP+++ +I   R  D
Sbjct: 374 GVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQILGVIAERRPTD 422

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAA------HRCTGGLACSAQQLERLKHFVSR 478
           A+    P  CP+C S V R    K  K   +      +RC G LAC AQ  + + HFVSR
Sbjct: 423 ARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSR 482

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++      D    +R PAD++ L   Q      +  + GF ++S  NL
Sbjct: 483 RAMDIDGLGDKIVEQLV---DKGL-VRSPADLYCLTHEQ------VIELEGFAEISTRNL 532

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I+  R  SL RF+++LGI  VG E A+ LA+   S     + + ++          L
Sbjct: 533 LHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDV----------L 582

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + +P VG  +A  I  F+++  N   + ALL+E
Sbjct: 583 VYLPDVGLEVAHEIHSFFEDEHNRTVI-ALLRE 614



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 12/154 (7%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI---CAVEALLKEVSP 634
           Q  A+   ++ A    DWL L +V  + +  A+++ +++  P N      +EA L+E   
Sbjct: 653 QRLAERFGSLEAIIAADWLDLRQVERLTEKAARSLRDYFDKPENAERARLIEAQLRE--- 709

Query: 635 SIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
             G H ++     E   L     V TGTL+ + R + +  +  LGA V+  +S KT  ++
Sbjct: 710 -FGMHWESERKAAEGLPLAGQTWVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVV 768

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            G   GSKL KA +LGV +++E QF+  L Q  +
Sbjct: 769 AGPGAGSKLTKANELGVTVLDESQFIERLAQLGS 802


>gi|261392961|emb|CAX50546.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria
           meningitidis 8013]
          Length = 841

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 268/825 (32%), Positives = 405/825 (49%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+    + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDRLFRELEALELNHPEF---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D     + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF ALN     
Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y +M+  R  LPY+IDG+V KV+  + Q++LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D +  
Sbjct: 338 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                      +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++ +  T 
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKEAADKTV 556

Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562
              + +   D SV               N+   I   +   L RF+F+LGIRHV      
Sbjct: 557 AESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616

Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                     G  +ARS+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675

Query: 597 SLIRVPL-----------------VGDIIAQAI-------VEFYQN-------------- 618
             + +P                  + +  AQA+       +E  QN              
Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSE 735

Query: 619 PRNICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           P+N   +E L    +  PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840


>gi|255102476|ref|ZP_05331453.1| DNA ligase [Clostridium difficile QCD-63q42]
          Length = 674

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 232/706 (32%), Positives = 387/706 (54%), Gaps = 52/706 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N+
Sbjct: 4   KDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTNR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E KIDG 
Sbjct: 61  VGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK++
Sbjct: 117 SVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKDN 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E   +   E
Sbjct: 175 FRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHSE 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++G
Sbjct: 235 SLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHNE
Sbjct: 295 YTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP+
Sbjct: 355 DYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCPV 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C    +R      G+  AA +C   ++C AQ    + HFVSRDA NI+GLG+  +     
Sbjct: 404 CSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLLN 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                   +I  D+  L   ++     +E +   G+ S  NL +SI K +   L R I  
Sbjct: 457 E-------KIIQDVSDLYYIKKEDVVDLERM---GEKSADNLINSIEKSKENDLWRLING 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI+ +G + A+ LA       NF ++++ +I+  ++    L  +   G I+A ++VEF+
Sbjct: 507 LGIKFIGVKAAKILA------YNF-KDLDEVISATSE---QLEELEEFGSIMANSVVEFF 556

Query: 617 QNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +  +N+  +   LK V   + S+    + V    E  K+V TGTL  ++R+ A++ + + 
Sbjct: 557 KEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEKR 615

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 616 GGKATSSVSKSTTFVLAGEEAGSKLTKASDLGIKVIDEERFLELLK 661


>gi|166216289|sp|A4VKN0|DNLJ_PSEU5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 788

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/633 (34%), Positives = 341/633 (53%), Gaps = 49/633 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S + A + ++ L  EI  H+  YY   +P + D+EYD L     A+    P+L     P 
Sbjct: 3   SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELV---TPE 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSI 126
            P  ++GG    +  +V H +P LSL   +  +DL  F  R+             D   +
Sbjct: 60  SPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAVV 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            ++ EPK+DG  +++ YE G  V  A RGDG +GED+SA +R +  IP ++     P ++
Sbjct: 120 EYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVL 179

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGE+Y+ K  F ALN   +  G KP+ANPRNAA+G LR+L+     +R L    +G+G
Sbjct: 180 EVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVG 239

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           ++          +LQ ++  G P++  ++ A       +YY+ + + R  LPY+IDG+V+
Sbjct: 240 RSDGELPDTHIGILQALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVF 299

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+    Q++LG RAR PRW I+HKF  ++  T LLD++ Q+GRTG +TPVARL+PV + 
Sbjct: 300 KVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVA 359

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            + +GD V+V+RAG+VIP+++ +I   R  D
Sbjct: 360 GVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQILGVIAERRPTD 408

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAA------HRCTGGLACSAQQLERLKHFVSR 478
           A+    P  CP+C S V R    K  K   +      +RC G LAC AQ  + + HFVSR
Sbjct: 409 ARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSR 468

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++      D    +R PAD++ L   Q      +  + GF ++S  NL
Sbjct: 469 RAMDIDGLGDKIVEQLV---DKGL-VRSPADLYCLTHEQ------VIELEGFAEISTRNL 518

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I+  R  SL RF+++LGI  VG E A+ LA+   S     + + ++          L
Sbjct: 519 LHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDV----------L 568

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + +P VG  +A  I  F+++  N   + ALL+E
Sbjct: 569 VYLPDVGLEVAHEIHSFFEDEHNRTVI-ALLRE 600



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 12/154 (7%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           Q  A+   ++ A    DWL L +V  + +  A+++ +++  P N      +EA L+E   
Sbjct: 639 QRLAERFGSLEAIIAADWLDLRQVERLTEKAARSLRDYFDKPENAERARLIEAQLRE--- 695

Query: 635 SIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
             G H ++     E   L     V TGTL+ + R + +  +  LGA V+  +S KT  ++
Sbjct: 696 -FGMHWESERKAAEGLPLAGQTWVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVV 754

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            G   GSKL KA +LGV +++E QF+  L Q  +
Sbjct: 755 AGPGAGSKLTKANELGVTVLDESQFIERLAQLGS 788


>gi|297623824|ref|YP_003705258.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093]
 gi|297165004|gb|ADI14715.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093]
          Length = 681

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/683 (34%), Positives = 355/683 (51%), Gaps = 59/683 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+E+D L      +    P+L     P+ P  ++G     S   V H  P
Sbjct: 25  YYVLQDPELSDAEWDRLFHELKRLEETHPEL---RTPDSPTQRVGAPPQASFAAVRHPHP 81

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+  +++  L +F  R+ R      D  I +  E KIDG  I + YE G  V+AA R
Sbjct: 82  MLSLDNAFDLAGLEEFEARLKRVLAT--DEEIAYLAELKIDGLSINLLYEGGVLVWAATR 139

Query: 155 GDGHSGEDVSACIRAIPTIPRVL------SLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
           GDG +GEDV+  +  +P +P+ L         +PE++EVRGE+Y+S+ +F  +N+E  A 
Sbjct: 140 GDGVTGEDVTFNVLGVPGLPQRLPEALPGGGRVPEVLEVRGELYLSRAEFRRINEERAAA 199

Query: 209 GRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
           G  P+ NPRNAASG +R+L+P     R L  F +G+ +   +  + Q E+L  +   GF 
Sbjct: 200 GEPPFKNPRNAASGTIRQLDPRVSAGRKLQVFFYGVAEPRALGVRTQSELLDWLAAAGFR 259

Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
            N    +A     +        ++RSTL Y+ DG+V KVDE +L  +LG  AR+PRW ++
Sbjct: 260 TNPLRARARGIAALEPLIARWTALRSTLDYEADGVVVKVDELALHDELGSTARAPRWAVA 319

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           +KF  ++  T LL + + +GRTG +TPVA LEP  I G  ++ ATLHN  +I  L     
Sbjct: 320 YKFPAEEVETTLLGVSLGVGRTGKITPVAELEPRLIEGTEVSRATLHNPGFIAAL----- 374

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                 D+RVGDRV+V ++G +IP+V+ ++   R  +  P+ FP  CP C   ++ D   
Sbjct: 375 ------DLRVGDRVMVHKSGGIIPEVIRVLTEARTAELPPYVFPETCPACGEALIED--- 425

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC   LAC AQ L RL H+ SR A +I GL  + L       D      IP
Sbjct: 426 -----GANVRCV-NLACPAQVLARLSHYASRGAMDIAGLSTKTLQKLL---DKGLIRTIP 476

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
            D++ L   Q T       + GFG+ S  NL  +I + +   LER + +LG+ HVGA  A
Sbjct: 477 -DLYDLTPEQLTP------LEGFGERSAQNLVAAIARSKTQPLERLLVALGLPHVGARTA 529

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + LA+ + S +          A    D   L  +P VG+  A+A+ +  Q P    A+ A
Sbjct: 530 QLLARAFGSLE----------ALQAADTADLAALPEVGETTARAVHDALQQP----ALRA 575

Query: 628 LLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L+ E+             S  ++    V TGTL +  R + +E +  LGA V++ +S+KT
Sbjct: 576 LIGELRARGVGGGAAAPRSDRLKGLTFVLTGTLSE-PRDRLKERLEALGARVASSVSKKT 634

Query: 686 DIIIVGDNPGSKLEKAQQLGVKI 708
             ++ G++PGSKL+KA+ LGV +
Sbjct: 635 SFVVAGEDPGSKLDKARALGVPV 657


>gi|325197886|gb|ADY93342.1| DNA ligase, NAD-dependent [Neisseria meningitidis G2136]
          Length = 841

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 270/825 (32%), Positives = 407/825 (49%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D  +  + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF ALN     
Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARRQGGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV+  + Q++LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D    
Sbjct: 338 PRWAIAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                +V R  +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAEAPAANQTQSVPLYKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++T+  T 
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556

Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562
              + +     SV               N+   I   +   L RF+F+LGIRHV      
Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616

Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                     G  +ARS+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQA 675

Query: 597 SLIRVPL-----------------VGDIIAQAIVEF-----------------YQNPRNI 622
             + +P                  + +  AQA+ E                  +Q  R+ 
Sbjct: 676 QAVSLPAAQYAEPQRWIARLPGFKISENKAQALWELAGKSIEGLQTDKSLPADWQAWRSE 735

Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
               ALL+ +       PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840


>gi|254976908|ref|ZP_05273380.1| DNA ligase [Clostridium difficile QCD-66c26]
 gi|255308381|ref|ZP_05352552.1| DNA ligase [Clostridium difficile ATCC 43255]
 gi|255316048|ref|ZP_05357631.1| DNA ligase [Clostridium difficile QCD-76w55]
 gi|255518705|ref|ZP_05386381.1| DNA ligase [Clostridium difficile QCD-97b34]
 gi|255651827|ref|ZP_05398729.1| DNA ligase [Clostridium difficile QCD-37x79]
 gi|306521614|ref|ZP_07407961.1| DNA ligase [Clostridium difficile QCD-32g58]
          Length = 674

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 232/707 (32%), Positives = 387/707 (54%), Gaps = 52/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N
Sbjct: 3   VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTN 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E KIDG
Sbjct: 60  RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK+
Sbjct: 116 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 173

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           +F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E   +   
Sbjct: 174 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHS 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++
Sbjct: 234 ESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEM 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHN
Sbjct: 294 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 353

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP
Sbjct: 354 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    +R      G+  AA +C   ++C AQ    + HFVSRDA NI+GLG+  +    
Sbjct: 403 VCSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 455

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                    +I  D+  L   ++     +E +   G+ S  NL +SI K +   L R I 
Sbjct: 456 NE-------KIIQDVSDLYYIKKEDVVDLERM---GEKSADNLINSIEKSKENDLWRLIN 505

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI+ +G + A+ LA       NF ++++ +I+  ++    L  +   G I+A ++VEF
Sbjct: 506 GLGIKFIGVKAAKILA------YNF-KDLDEVISATSE---QLEELEEFGSIMANSVVEF 555

Query: 616 YQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++  +N+  +   LK V   + S+    + V    E  K+V TGTL  ++R+ A++ + +
Sbjct: 556 FKEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEK 614

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 615 RGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 661


>gi|260684853|ref|YP_003216138.1| DNA ligase [Clostridium difficile CD196]
 gi|260688511|ref|YP_003219645.1| DNA ligase [Clostridium difficile R20291]
 gi|260211016|emb|CBA66332.1| DNA ligase [Clostridium difficile CD196]
 gi|260214528|emb|CBE07046.1| DNA ligase [Clostridium difficile R20291]
          Length = 677

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 232/707 (32%), Positives = 387/707 (54%), Gaps = 52/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N
Sbjct: 6   VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTN 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E KIDG
Sbjct: 63  RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK+
Sbjct: 119 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           +F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E   +   
Sbjct: 177 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHS 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++
Sbjct: 237 ESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEM 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHN
Sbjct: 297 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP
Sbjct: 357 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    +R      G+  AA +C   ++C AQ    + HFVSRDA NI+GLG+  +    
Sbjct: 406 VCSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                    +I  D+  L   ++     +E +   G+ S  NL +SI K +   L R I 
Sbjct: 459 NE-------KIIQDVSDLYYIKKEDVVDLERM---GEKSADNLINSIEKSKENDLWRLIN 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI+ +G + A+ LA       NF ++++ +I+  ++    L  +   G I+A ++VEF
Sbjct: 509 GLGIKFIGVKAAKILA------YNF-KDLDEVISATSE---QLEELEEFGSIMANSVVEF 558

Query: 616 YQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++  +N+  +   LK V   + S+    + V    E  K+V TGTL  ++R+ A++ + +
Sbjct: 559 FKEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 618 RGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 664


>gi|260911472|ref|ZP_05918061.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634401|gb|EEX52502.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 666

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 237/715 (33%), Positives = 383/715 (53%), Gaps = 66/715 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L  ++ +H+  YY  + P + D E+D L R    +    P++    DPN P  ++
Sbjct: 5   KRIEELRNQLHHHNYLYYVQNSPTLSDQEFDHLMRELQDLEAKHPEVY---DPNSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGT 137
           G +++    +V H  P LSL   +N +++  +    Y   +K  D   F    E K DG 
Sbjct: 62  GSDLSTGFTQVRHRYPMLSLANTYNEQEVASW----YENVRKDLDGQPFEVCCELKYDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE+G+ V A  RGDG  G+DV+A +R I  IP VL     P+  E+RGE+ +   
Sbjct: 118 SISLTYEQGRLVRAVTRGDGEQGDDVTANVRTIRAIPLVLPGTGYPDEFEIRGEILMPWK 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E        +ANPRNAASG L+ L+P  +  R L+ +++ L     + + G Y
Sbjct: 178 VFEQLNAEREKAEEPLFANPRNAASGTLKSLDPKLVAKRKLDAYLYYL-LGDNVPSDGHY 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+     GF V+ G+R+AN+   I  + N   + R  LP   DG+V KV+    Q+QL
Sbjct: 237 ENLKTAEAWGFKVSEGIRKANSLEQIYEFINHWDTARHNLPVATDGIVLKVNSLRQQQQL 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  TRL ++  Q+GRTG +TPVA +EPV + G  +  ATL+N
Sbjct: 297 GFTAKSPRWAIAYKFKAERVCTRLNEVTFQVGRTGAVTPVANMEPVLLAGTTVKRATLNN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED+I+ L           D+ +GD V V++ GE+IPK+V + V+ R PD QP  F S CP
Sbjct: 357 EDFIRSL-----------DLHIGDNVFVEKGGEIIPKIVGVDVSHRSPDLQPVHFISNCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S +VR      G+  AA+ C     C  Q   R++HF++R A NI+ +G + +D +F
Sbjct: 406 ECGSPLVR----YAGE--AAYYCPNDTGCPPQIKGRIEHFIARKAMNIDSIGPETIDDYF 459

Query: 496 KSEDPAFSIRIPADIFTLQRRQ-------QTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +       +R  AD++ ++  Q       Q S  KI          V  + DS+    + 
Sbjct: 460 RKG----IVRNVADLYEIRTEQINGDGTRQKSAQKI----------VKGIQDSV----ST 501

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             ER +F+LGIR VG   A+ LAK++ S       I+ ++    +    L+ V  VG +I
Sbjct: 502 PFERVLFALGIRFVGETTAKLLAKHFKS-------IDALMTATPE---QLVEVEGVGTVI 551

Query: 609 AQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKA 666
           A+++V F+ +  N+  +E L +  +  ++   ++ ++S+ +  K +V +G  ++  R + 
Sbjct: 552 AESVVRFFHDEVNLNIIERLRQHGLQMALSADQQQIASDKLAGKNIVISGVFERHSRDEY 611

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +   G    + +S KT  I+ G N G SK++KAQQLG+++++E+ FL +L+Q
Sbjct: 612 KAMIESNGGKNVSSISNKTSFILAGANMGPSKMQKAQQLGIEMIDEDTFLNMLEQ 666


>gi|162448184|ref|YP_001621316.1| DNA ligase [Acholeplasma laidlawii PG-8A]
 gi|190359222|sp|A9NHW0|DNLJ_ACHLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161986291|gb|ABX81940.1| DNA ligase, NAD-dependent [Acholeplasma laidlawii PG-8A]
          Length = 659

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/695 (34%), Positives = 377/695 (54%), Gaps = 49/695 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L ++I+  +  Y+   +PII D  YD L R    +   +P+    +D   P  KIGG
Sbjct: 7   IKELRKQINEANYLYHTKDQPIISDFVYDGLMRELIELETKYPEY---DDETSPTKKIGG 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +  +  K TH++P +SL  I+N E+L+ F  RI    QK   N+  FT E KIDG  +T
Sbjct: 64  VVLDAFKKHTHTVPMMSLSNIFNKEELKVFYDRI----QKVIPNT-SFTTELKIDGLAVT 118

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YEKG F  AA RG+G  GED++  ++ I T+P  L L+ P  IEVRGE+Y+S   F  
Sbjct: 119 LIYEKGIFKKAATRGNGVVGEDITENVKTIKTLP--LQLSKPLDIEVRGEIYMSHKTFKE 176

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N E        + NPRNAA+G +R+L+   +  R L+ F + +   S  F   Q E L+
Sbjct: 177 VNLERANSNLDLFVNPRNAAAGTVRQLDSKVVAKRRLDLFTYTVVGASN-FNSTQKETLE 235

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGFPVN   +  +    +    +    +R TLPYD DG+V KV++F   + +G  A
Sbjct: 236 FLSELGFPVNPHYKLVDNLDALSDAIDNYDILRKTLPYDTDGVVIKVNQFEHYETIGYTA 295

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           + P++  ++KF  ++  T++ DI  Q+GRTG++TPVA L PV I G+L++ ATLHNEDYI
Sbjct: 296 KYPKYAGAYKFEAEKQITKVEDIIFQVGRTGVITPVAVLTPVFISGSLVSRATLHNEDYI 355

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
                        +DIR+ D+VLV +AGE+IP+V+++++  R   A PF     CP C+S
Sbjct: 356 L-----------NKDIRIDDQVLVHKAGEIIPEVIEVVLGSRTNQA-PFEMVKHCPACES 403

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +VR    K G+  A + C     C  + +  L HF SR A +I+ LG++ ++      D
Sbjct: 404 NLVR----KQGE--ADYYCAND-NCPGKNVFGLIHFASRAAMDIDTLGEKVVELL---HD 453

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
             +   IP DI+ L     T   ++E + GFG   V  L ++I   +  +L+R IF LGI
Sbjct: 454 QTYLQTIP-DIYKL----HTFKDQLEELPGFGKKKVEKLLNAIEASKMQTLDRLIFGLGI 508

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           ++VGA++A++L  +Y S    A          +  +  LI++P +G  IA ++  ++ N 
Sbjct: 509 KNVGAKVAKTLLNHYPSITLLA----------DAKYEDLIQIPDIGPEIADSVTTYFSNE 558

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
            N   +E L         + +   +     K  V TGTL    R +A + + +LG  VS 
Sbjct: 559 SNQHMLEELKNLGLQMTYKIDVVTTHPFNGKTFVVTGTLDDFSRTEASDIIEKLGGKVSG 618

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            +S+KTD ++ G   GSKL KA +LG+++M+E  F
Sbjct: 619 SVSKKTDYVLAGKEAGSKLTKALELGIEVMDEATF 653


>gi|15676564|ref|NP_273708.1| DNA ligase [Neisseria meningitidis MC58]
 gi|161869603|ref|YP_001598770.1| DNA ligase [Neisseria meningitidis 053442]
 gi|304388085|ref|ZP_07370214.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091]
 gi|81784869|sp|Q9K0E3|DNLJ_NEIMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359266|sp|A9M2U7|DNLJ_NEIM0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|7225892|gb|AAF41084.1| DNA ligase [Neisseria meningitidis MC58]
 gi|161595156|gb|ABX72816.1| DNA ligase [Neisseria meningitidis 053442]
 gi|304337942|gb|EFM04082.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091]
 gi|316983632|gb|EFV62613.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76]
 gi|325139885|gb|EGC62416.1| DNA ligase, NAD-dependent [Neisseria meningitidis CU385]
 gi|325200648|gb|ADY96103.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76]
          Length = 841

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 267/825 (32%), Positives = 406/825 (49%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D  +  + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF+ALN     
Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMLKADFVALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +  + F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQDGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV+  + Q +LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D +  
Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                      +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++T+  T 
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556

Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562
              + +     SV               N+   I   +   L RF+F+LGIRHV      
Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPELARFLFALGIRHVGERTAK 616

Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                     G  +ARS+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675

Query: 597 SLIRVPL-----------------VGDIIAQAIVEF-----------------YQNPRNI 622
             + +P                  + +  AQA+ E                  +Q  R+ 
Sbjct: 676 QAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEGLQTDKALPTDWQAWRSE 735

Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
               ALL+ +       PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840


>gi|121634462|ref|YP_974707.1| DNA ligase [Neisseria meningitidis FAM18]
 gi|166216218|sp|A1KSS7|DNLJ_NEIMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120866168|emb|CAM09908.1| putative DNA ligase [Neisseria meningitidis FAM18]
          Length = 841

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 267/825 (32%), Positives = 405/825 (49%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D     + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF+ALN     
Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMLKADFVALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +  + F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQDGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV+  + Q +LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D +  
Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                      +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++T+  T 
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556

Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562
              + +     SV               N+   I   +   L RF+F+LGIRHV      
Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPELARFLFALGIRHVGERTAK 616

Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                     G  +ARS+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675

Query: 597 SLIRVPL-----------------VGDIIAQAIVEF-----------------YQNPRNI 622
             + +P                  + +  AQA+ E                  +Q  R+ 
Sbjct: 676 QAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEGLQTDKALPTDWQAWRSE 735

Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
               ALL+ +       PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840


>gi|240013546|ref|ZP_04720459.1| putative DNA ligase [Neisseria gonorrhoeae DGI18]
 gi|240120618|ref|ZP_04733580.1| putative DNA ligase [Neisseria gonorrhoeae PID24-1]
          Length = 823

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 275/844 (32%), Positives = 412/844 (48%), Gaps = 176/844 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P I D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 10  ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EPK
Sbjct: 64  GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV 
Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEI 249
           + K DF ALN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    +
Sbjct: 184 MLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGL 242

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + NG      F  I   +++Y  M+  R  LPY+IDG V KV
Sbjct: 243 IAEEHIQELAYFQALGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 301 NSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I   R     
Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 465

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519

Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549
             TLQ+ ++T+     EN  G      GD+S                N+   I   +   
Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579

Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577
           L RF+F+LGIRHVG                                  +ARS+A ++   
Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615
           +  A  I+ ++A         + +P                  + +  AQA+ E      
Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698

Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654
                       +Q  R+     ALL+ +       PS     +    ++  +  K  V 
Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + 
Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 818

Query: 715 LFLL 718
           L LL
Sbjct: 819 LTLL 822


>gi|240015985|ref|ZP_04722525.1| putative DNA ligase [Neisseria gonorrhoeae FA6140]
 gi|240112339|ref|ZP_04726829.1| putative DNA ligase [Neisseria gonorrhoeae MS11]
          Length = 823

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 275/844 (32%), Positives = 413/844 (48%), Gaps = 176/844 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P I D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 10  ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EPK
Sbjct: 64  GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV 
Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K DF  LN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F
Sbjct: 184 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 242

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV
Sbjct: 243 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVVKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 301 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I   R     
Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 465

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519

Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549
             TLQ+ ++T+     EN  G      GD+S                N+   I   +   
Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579

Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577
           L RF+F+LGIRHVG                                  +ARS+A ++   
Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615
           +  A  I+ ++A         + +P                  + +  AQA+ E      
Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698

Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654
                       +Q  R+     ALL+ +       PS     +    ++  +  K  V 
Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + 
Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 818

Query: 715 LFLL 718
           L LL
Sbjct: 819 LTLL 822


>gi|254493140|ref|ZP_05106311.1| DNA ligase [Neisseria gonorrhoeae 1291]
 gi|268598398|ref|ZP_06132565.1| DNA ligase [Neisseria gonorrhoeae MS11]
 gi|226512180|gb|EEH61525.1| DNA ligase [Neisseria gonorrhoeae 1291]
 gi|268582529|gb|EEZ47205.1| DNA ligase [Neisseria gonorrhoeae MS11]
          Length = 829

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 275/844 (32%), Positives = 413/844 (48%), Gaps = 176/844 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P I D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 16  ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 69

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EPK
Sbjct: 70  GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 129

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV 
Sbjct: 130 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 189

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K DF  LN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F
Sbjct: 190 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 248

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV
Sbjct: 249 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVVKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 307 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I   R     
Sbjct: 367 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 415

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 416 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 471

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 472 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 525

Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549
             TLQ+ ++T+     EN  G      GD+S                N+   I   +   
Sbjct: 526 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 585

Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577
           L RF+F+LGIRHVG                                  +ARS+A ++   
Sbjct: 586 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 645

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615
           +  A  I+ ++A         + +P                  + +  AQA+ E      
Sbjct: 646 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 704

Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654
                       +Q  R+     ALL+ +       PS     +    ++  +  K  V 
Sbjct: 705 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 764

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + 
Sbjct: 765 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 824

Query: 715 LFLL 718
           L LL
Sbjct: 825 LTLL 828


>gi|313106533|ref|ZP_07792762.1| DNA ligase [Pseudomonas aeruginosa 39016]
 gi|310879264|gb|EFQ37858.1| DNA ligase [Pseudomonas aeruginosa 39016]
          Length = 794

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 336/623 (53%), Gaps = 50/623 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P ++     PEI+
Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S   +  Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 QVSGTLSDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQ    P  CP+C S V R    K  K        A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++      D    +  PAD++TL   Q      +  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYEQ------VFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621
             +P VG  +A  I  F+ +  N
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S       ++ II     DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660
           A+++ +F+  P N+    A+EA L+E     G H ++    +E   L     V TGTL+ 
Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQIWVLTGTLEA 729

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+  L L  +
Sbjct: 730 MSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDE 789

Query: 721 YNTT 724
           +   
Sbjct: 790 HGVA 793


>gi|224539983|ref|ZP_03680522.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518409|gb|EEF87514.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 694

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/708 (33%), Positives = 378/708 (53%), Gaps = 52/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++  L  E+  H+  YY  + P I D E+D + R    +    P+    +D   P  
Sbjct: 32  AKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQDMEREHPEY---QDETSPTM 88

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +VTH  P LSL   ++  ++  F  R     QK  +       E K DG
Sbjct: 89  RVGSDLNKNFTQVTHKYPMLSLGNTYSEGEVSDFYDRT----QKALNEDFEICAELKYDG 144

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK + A  RGDG  G+DV+  ++ I TIP VL  + P++ E+RGE+ +   
Sbjct: 145 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPQLFEIRGEILMPWE 204

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L    E+   G Y
Sbjct: 205 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 263

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQK    GF +++ +++ ++   +  Y +   + R  LP   DG+V KV+    QK L
Sbjct: 264 ENLQKAAQWGFKISDHMKKCHSLQEVFDYIHYWDTERKNLPVATDGIVLKVNSLKQQKNL 323

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 324 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 383

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434
            D I+GL           D+ VGD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 384 ADIIEGL-----------DLHVGDMVYVEKGGEIIPKITGVDKDARSMMVGEKVKFITHC 432

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R      G+  AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 433 PECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 486

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++ L      +   I+N+   GD S  N+   I + + +  ER +
Sbjct: 487 YR----LGLIKDTADLYKL------TVDDIKNLDRMGDKSAENIVKGIAQSKEVPFERAL 536

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D   LI +  +G+ IAQ+I+ 
Sbjct: 537 FALGIRFVGETVAKKIAKSFTDIEEL----------ENADLERLINIDEIGEKIAQSIIS 586

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ NP N   +E  LK       R E+++S    ++  + +V +G      R + ++ + 
Sbjct: 587 YFANPLNRELIER-LKIAGLQFSRKEEDLSGYTDKLAGQSIVISGVFTHHSRDEYKDLIE 645

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ G+N G +KLEKAQ+LGV+IM+E++FL L+
Sbjct: 646 KNGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVQIMSEDEFLALI 693


>gi|325141882|gb|EGC64324.1| DNA ligase, NAD-dependent [Neisseria meningitidis 961-5945]
          Length = 841

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 271/822 (32%), Positives = 407/822 (49%), Gaps = 163/822 (19%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D  +  + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           + AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF ALN     
Sbjct: 161 IQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV+  + Q +LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D    
Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                +V R  +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAEAPAANQTQSVPLYKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA--FSIRIPADIFTLQRRQQTS--TTKIE 525
           + L HF SR A +I+GLG++Q++    ++D    F+     DI TLQ+ ++T+  T    
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLV-AQDLVLHFADLYRLDIPTLQKMKETADKTVAES 559

Query: 526 NILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV--------- 562
           + +     SV               N+   I   +   L RF+F+LGIRHV         
Sbjct: 560 DQMPSEGSSVGASGKHKKQPVKWAENILAGIESGKTPELARFLFALGIRHVGERTAKTLA 619

Query: 563 -----------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
                                  G  +ARS+A ++   +  A  I+ ++A         +
Sbjct: 620 QAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQTQAV 678

Query: 600 RVP-----------------LVGDIIAQAI-------VEFYQN--------------PRN 621
            +P                  + +  AQA+       +E  QN              P+N
Sbjct: 679 TIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSEPQN 738

Query: 622 ICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +E L    +  PS     +    ++  +  K  V TGTL  ++R +AQ  +   G  
Sbjct: 739 AALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGK 798

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           VS  +S+KTD ++ G+  GSKLEKA  LGV I++E + L LL
Sbjct: 799 VSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840


>gi|304317508|ref|YP_003852653.1| DNA ligase, NAD-dependent [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779010|gb|ADL69569.1| DNA ligase, NAD-dependent [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 659

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 235/710 (33%), Positives = 383/710 (53%), Gaps = 52/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE+  KEL   + ++++H+  YY   +P I D EYD + R    +    P+    + P
Sbjct: 1   MTIEERIKEL---KDKLNHHNYMYYVLDRPEISDYEYDMMMRELIKLEEEHPEF---KTP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE        TH +   SL   ++  +LR F  R+     +     + + +E
Sbjct: 55  DSPTQRVGGEPVKEFEPFTHVVVMQSLANAFSEGELRDFDRRV-----RSSVGDVEYVVE 109

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + YE G F   + RGDG  GE+V+  ++ I +IP  L  N+  I  VRGEV
Sbjct: 110 LKIDGLSVELIYENGIFTIGSTRGDGFVGENVTNNLKTIKSIPLRLKDNLNLI--VRGEV 167

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ +  F  LN+E    G   +ANPRNAA+G LR+LNP     R L+ FV  L +   + 
Sbjct: 168 FMPRASFEKLNEERELNGESLFANPRNAAAGSLRQLNPKITAKRDLDIFVFNLQRIEGVE 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E L+ ++  GF V+  +++      ++   N +++IR +LPYD DG V KV++  
Sbjct: 228 LKTHVEALEFLKEQGFKVSPHLKKCKNIDEVIEDINYIRTIRDSLPYDTDGAVVKVNDLE 287

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + PRW I+ K+  ++  T++ DI +Q+GRTG LTP A LEPV I G++++ 
Sbjct: 288 KREILGSTVKDPRWAIAFKYPAERQKTKVKDIIVQVGRTGALTPTAILEPVKIAGSIVSR 347

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYIK            +DIR+GD V++++AGE+IP+VV ++V +R    + F  
Sbjct: 348 ATLHNEDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVSVVVEDRKGHEKNFFM 396

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C +  VR      G+  A  RCT GL C A+    + HF S+DA +I+GLG   
Sbjct: 397 PDTCPECGATTVR----LPGE--AVTRCT-GLNCPAKLKRGIIHFASKDAMDIDGLGPAV 449

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     +      I   AD++ L+        ++      GD SV NL ++I + +   L
Sbjct: 450 IGQLLDNH----LIHNIADLYYLKYDDLIKLDRM------GDKSVKNLLNAIEESKGRDL 499

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R IF LGI  +G++ A  LA ++ +  +  +            +  L  +  VG  +A 
Sbjct: 500 DRVIFGLGIDLIGSKAASILANHFKTMDSLEEA----------SFDELTNIEEVGPKMAD 549

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I+ F++  +N   ++ L +     + +  +N S+  +    V TGTL    R +A++ +
Sbjct: 550 SIIAFFKEKQNKEILDKLKEAGVNMVKKKSENTSNIFDGLTFVLTGTLSNYTRDEAKKLI 609

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + G  V+  +S+KT+ ++ G +PGSKL KAQQLGVK+++EE+F  +L+Q
Sbjct: 610 EERGGKVTGSVSKKTNYVVAGTDPGSKLSKAQQLGVKVIDEEEFENMLKQ 659


>gi|189465636|ref|ZP_03014421.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM
           17393]
 gi|189437910|gb|EDV06895.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM
           17393]
          Length = 665

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/708 (33%), Positives = 377/708 (53%), Gaps = 52/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++  L  E+  H+  YY  + P I D E+D + R    +    P+    +D   P  
Sbjct: 3   AKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQEMEREHPEY---QDETSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +VTH  P LSL   ++  ++  F  R     QK  +       E K DG
Sbjct: 60  RVGSDLNKNFTQVTHKYPMLSLGNTYSEGEVSDFYDRT----QKALNEDFEICAELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK + A  RGDG  G+DV+  ++ I TIP VL  + P++ E+RGE+ +   
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPQLFEIRGEILMPWK 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L    E+   G Y
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQK    GF +++ +++ ++   +  Y +   + R  LP   DG+V KV+    QK L
Sbjct: 235 ENLQKAAQWGFKISDHMKKCHSLQEVFDYIHYWDTERKNLPVATDGIVLKVNSLKQQKNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434
            D I+GL           D+ VGD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 355 ADIIEGL-----------DLHVGDMVYVEKGGEIIPKITGVDKDARSMMVGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R      G+  AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+   D++ L      +   I+N+   GD S  N+   I + R +  ER +
Sbjct: 458 YR----LGLIKDTTDLYKL------TVDDIKNLDRMGDKSAENIVKGIAQSREVPFERAL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D   LI +  +G+ IAQ+I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSFTDIEEL----------ENADLERLINIDEIGEKIAQSIIS 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ NP N   +E  LK       R E+++S    ++  + +V +G      R + ++ + 
Sbjct: 558 YFANPLNRELIER-LKIAGLQFSRKEEDLSGYTDKLVGQSIVISGVFTHHSRDEYKDLIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ G+N G +KLEKAQ+LGV+IM+E++FL L+
Sbjct: 617 KNGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVQIMSEDEFLALI 664


>gi|120434999|ref|YP_860685.1| DNA ligase [Gramella forsetii KT0803]
 gi|166215777|sp|A0LZ23|DNLJ_GRAFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117577149|emb|CAL65618.1| DNA ligase [Gramella forsetii KT0803]
          Length = 664

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/712 (32%), Positives = 381/712 (53%), Gaps = 57/712 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  K++  L +E+  H+  YY   KP I D E+D   +    +   +P+    ED N P 
Sbjct: 2   EVEKKIRGLREELQQHNYNYYVLDKPQISDYEFDIKLKELQELEEKYPEF---EDDNSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +   V H     SL   ++ E+L ++  R+ +  + K    I +  E K D
Sbjct: 59  RRVGGAVTKNFETVVHENRMYSLSNSYSKEELEEWEARLKKIVEGK----IQYVCELKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ YE G    A  RGDG  G+DV+  I+ I ++P  L    P   ++RGE+ +  
Sbjct: 115 GASISLTYENGILKRAVTRGDGFQGDDVTNNIKTIRSVPLKLKDEFPHKFDIRGEIVLPY 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL-GKTSEIFAKG 253
             F  +N E + +G +PYANPRN ASG L+  +  ++ R  L   ++ + G+ + + +  
Sbjct: 175 EGFAKMNAERVEMGEEPYANPRNTASGSLKLQDSAEVARRPLECLLYSITGENTGVAS-- 232

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+E L+K R  GF V       ++   ++ Y N     R  LPY+ DG+V KV+ F  Q+
Sbjct: 233 QFEGLEKARKWGFKVPAESELKDSIEEVLHYINYWDEHRHDLPYETDGVVVKVNNFHQQE 292

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  +Q ST+L  I  Q+GRTG +TPVA L+ V + G ++  A+L
Sbjct: 293 ELGHTAKSPRWAIAYKFKAEQESTKLNKITYQVGRTGAITPVANLDAVQLAGTVVRRASL 352

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L           D+R GD V V++ GE+IPK+V +   +R PD+ P  + + 
Sbjct: 353 HNADQIEKL-----------DVREGDTVFVEKGGEIIPKIVGVDFTKRDPDSNPTQYATN 401

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S ++R    K G+  A H C     C  Q + R++H++SR A +IEGLG + +  
Sbjct: 402 CPECDSELIR----KDGE--AQHYCPNVNGCPPQIIGRIQHYISRKAMDIEGLGGETVAL 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              ++     I   AD++ LQ+ +     ++       + S  NL + I + + I  ER 
Sbjct: 456 LVNAD----LIESYADLYKLQKEEVLPLERM------AEKSAENLINGIERSKEIPFERV 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR+VG  +A+ LAK++ S       I  ++A + ++   L+ +  +G+ IA ++V
Sbjct: 506 LFALGIRYVGETVAKKLAKHFKS-------IEALMAASEEE---LVNIDEIGERIAWSVV 555

Query: 614 EFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           EF+    N   VE L +     E+S     ++ N+   +E    V +G  +K+ R+  ++
Sbjct: 556 EFFNIEANRENVERLKEYGIQLEISAEKLANQTNI---LEGNTFVISGVFEKVSRNDLKK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   G  +S+ +S KT+ ++ GDN G SKL KA++LG  I++EE FL +L+
Sbjct: 613 MIEDNGGKLSSSISSKTNYLVAGDNMGPSKLAKAEKLGTSIISEEDFLKMLE 664


>gi|254411541|ref|ZP_05025318.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420]
 gi|196182042|gb|EDX77029.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420]
          Length = 676

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 245/721 (33%), Positives = 387/721 (53%), Gaps = 60/721 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +++Q  +EL +L Q+ SY    YY    P++ D+ YD L R    +   +P+L     P+
Sbjct: 3   NVKQRVQELRNLLQQASY---AYYVRDNPMMEDAVYDQLYRELQDLESQYPELV---TPD 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G +       V H+IP  SLE  +N+E+L K+  R  R+    D  ++ +  E 
Sbjct: 57  SPTQRVGEKPASEFSSVRHNIPLYSLENAFNLEELAKWQERWQRY--APDVKNVEYVCEL 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEV 191
           KIDG+ I + Y+ G  V    RGDG +GED++  IR I +IP  LS   P  I+EVRGE 
Sbjct: 115 KIDGSAIALTYKDGVLVRGVTRGDGVTGEDITQNIRTIRSIPLRLSTETPPPIVEVRGEA 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGL----GKT 246
           ++  + F  +N E  A G   +ANPRNAA+G LR+L+P  + R  L+FF + L     + 
Sbjct: 175 FLPLDVFEGINREREAAGEALFANPRNAAAGTLRQLDPKIVDRRQLDFFAYTLHLPGSEE 234

Query: 247 SEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            E     K Q+E L+ +R LGF VN   ++  +   +  YY    S R  LPY  DG+V 
Sbjct: 235 QETVPTLKSQWEALEFLRDLGFRVNPNRKRCASLAEVEEYYQYWDSQRRDLPYMTDGVVV 294

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K++ FSLQ+QLG   + PRW I+ K+  +++ T + ++ +Q+GRTG LTPVA L+PV + 
Sbjct: 295 KLNSFSLQEQLGFTQKFPRWAIALKYPAEESPTLVQNVTVQVGRTGALTPVAELKPVQLA 354

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ ATLHN D I+ L           ++ +GD V+V++AGE+IP+VV ++   R P+
Sbjct: 355 GTTVSRATLHNRDRIEEL-----------NLHLGDTVIVRKAGEIIPEVVRVLPELRPPE 403

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P   P+ CP+C   VVR      G+  A  RC    +C A     L H+ SR A +I 
Sbjct: 404 AKPVQMPTDCPVCHQPVVR----PPGE--AVTRCINA-SCPAIVKGSLNHWASRGALDIN 456

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ ++    S      +   AD++ L   Q T      N+   G+ S   L + I +
Sbjct: 457 GLGEKLVNQLVDS----GLVHSVADLYQLTLDQLT------NLERMGEKSAQKLINQIEQ 506

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
                  R ++ LGIR+VG   A+ LA+ + S       ++ + A    D  S+     +
Sbjct: 507 SNTQPWSRVLYGLGIRYVGTVNAQILAQQFPS-------VDQLAAARVTDIESVYG---I 556

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQ 659
           G  IAQ++ ++++ P N   +   L+E +  +    K  S+E     ++ K  V TGTL 
Sbjct: 557 GSEIAQSVNDWFRVPSNQTLINR-LREANLQLAGEPKVASAEAKSQPLQGKTFVITGTLP 615

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++R  A++ +   G  V++ +S KTD ++VG++ GSKLEKAQ+LG+  ++E   L  L 
Sbjct: 616 TLKRDDAKKLIQNAGGKVTSSVSSKTDYVLVGEDAGSKLEKAQELGINQISESDLLQWLN 675

Query: 720 Q 720
           +
Sbjct: 676 E 676


>gi|325131881|gb|EGC54581.1| DNA ligase, NAD-dependent [Neisseria meningitidis M6190]
          Length = 841

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 266/825 (32%), Positives = 405/825 (49%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D     + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF+ALN     
Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMLKADFVALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +  + F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQDGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV+  + Q +LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D +  
Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                      +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522
           + L HF SR A +++GLG++Q++     +     +R  AD++     TLQ+ ++T+  T 
Sbjct: 501 QGLIHFASRKAMDLDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556

Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562
              + +     SV               N+   I   +   L RF+F+LGIRHV      
Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPELARFLFALGIRHVGERTAK 616

Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                     G  +ARS+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675

Query: 597 SLIRVP-----------------LVGDIIAQAIVEF-----------------YQNPRNI 622
             + +P                  + +  AQA+ E                  +Q  R+ 
Sbjct: 676 QAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEGLQTDKALPTDWQAWRSE 735

Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
               ALL+ +       PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840


>gi|291544905|emb|CBL18014.1| DNA ligase, NAD-dependent [Ruminococcus sp. 18P13]
          Length = 660

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/710 (33%), Positives = 379/710 (53%), Gaps = 61/710 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQA+  L+ L +EI  H+  YY    P I D +YDAL R   AI   +P L     P
Sbjct: 1   MDFEQAKLRLAQLTKEIEQHNYAYYVLDAPTIEDCDYDALMRELKAIETEYPQLL---SP 57

Query: 72  NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++GG M LS F KVTH++   SL  +++ E++  F+       Q+K D +  FT+
Sbjct: 58  HSPSQRVGG-MALSDFQKVTHTVQMGSLRDVFSFEEVAAFVAE----CQQKLD-APRFTV 111

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPKIDG  +++ YE G     + RGDG  GEDV+  IR I +IP  L  + P ++EVRGE
Sbjct: 112 EPKIDGLSVSLLYENGVLTCGSTRGDGFVGEDVTGNIRTIRSIPLRLE-DAPALLEVRGE 170

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++ ++ FL L ++      +P+ NPRNAA+G LR+ +  ++T  R L+ FV  + + + 
Sbjct: 171 VFMPRDSFLKLVEQQELADEQPFKNPRNAAAGSLRQKH-AEVTAKRRLDIFVFNVQQMTG 229

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  MR LGF      R   T+  I    + +   R+ LPYDIDG+V KV++
Sbjct: 230 GLHGTHAESLTWMRKLGFKTVE-FRLCETYQEIREQISRIGEERAKLPYDIDGVVIKVND 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + ++ +G   + P+W +++KF  ++  TRL  I++ +GRTG +TPVA  +P+ + G  +
Sbjct: 289 LAQRQVMGATTKVPKWAVAYKFPPEEKETRLQKIEVNVGRTGAITPVAVFDPITLAGTSV 348

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A LHN+ +I             +DIRVGD + V++AGE+IP+V+  + ++  PD+ P+
Sbjct: 349 SRAVLHNQQFI-----------ADKDIRVGDMIRVRKAGEIIPEVLASVSHQ--PDSVPY 395

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P+ CP+C +  VRD  P+   L    RC     C AQ L+ + HF S+ A NI+G+G 
Sbjct: 396 TLPTHCPVCGTEAVRD--PEESVL----RCP-NTDCPAQLLKNVIHFASKGAMNIDGMGP 448

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYDSINKR 545
                   +      IR  AD++TL          +E++L    F + S  NL D+I K 
Sbjct: 449 AIAQALLDNG----KIRSVADLYTL---------TMEDLLSLDRFAEKSARNLLDAIEKS 495

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++  L+R IF LGIR +G   A  L   + S +             N     L  +   G
Sbjct: 496 KSAPLDRVIFGLGIRGIGQRAAVLLCDRFPSVEQIM----------NASVEQLAEIDGFG 545

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            I+A+++V+ ++ P  +  V+ L         +  +           V TGTL  ++R +
Sbjct: 546 SIMAESVVQAFREPHRVALVQRLQACGVTMQYQAAQAQDQRFVGMTFVLTGTLPTMKRDE 605

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           A++ +   G  VS  +S+KT +++ G++ GSKL KA+ LGV++++E + L
Sbjct: 606 AKKLIESFGGKVSGSVSKKTSVVVAGEDAGSKLMKAESLGVEVIDEAELL 655


>gi|15596726|ref|NP_250220.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAO1]
 gi|107100960|ref|ZP_01364878.1| hypothetical protein PaerPA_01001990 [Pseudomonas aeruginosa PACS2]
 gi|218892513|ref|YP_002441382.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa LESB58]
 gi|81541359|sp|Q9I3I4|DNLJ_PSEAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781394|sp|B7UVJ3|DNLJ_PSEA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|9947487|gb|AAG04918.1|AE004581_5 DNA ligase [Pseudomonas aeruginosa PAO1]
 gi|218772741|emb|CAW28526.1| DNA ligase [Pseudomonas aeruginosa LESB58]
          Length = 794

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 335/623 (53%), Gaps = 50/623 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P ++     PEI+
Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQ    P  CP+C S V R    K  K        A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++      D    +  PAD++TL   Q      +  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYEQ------VFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LTAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621
             +P VG  +A  I  F+ +  N
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S       ++ II     DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660
           A+++ +F+  P N+    A+EA L+E     G H ++    +E   L     V TGTL+ 
Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQTWVLTGTLEA 729

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+  L L  +
Sbjct: 730 MSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDE 789

Query: 721 YNTT 724
           +   
Sbjct: 790 HGVA 793


>gi|332970926|gb|EGK09901.1| NAD-dependent DNA ligase LigA [Kingella kingae ATCC 23330]
          Length = 785

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 268/816 (32%), Positives = 407/816 (49%), Gaps = 141/816 (17%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  Q + ++  L + ++ +   YY    P + DSEYD L R  + +   FP       P
Sbjct: 1   MSNTQIQNQIKHLTEILNRYAHEYYTLDAPSVPDSEYDKLYRELEQLERDFPYF---RLP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLR------KFITRIYRFWQKKDDNS 125
             P N++GG +      V H++P LSL   ++  D        + +    R  +  +   
Sbjct: 58  ESPTNRVGGAILSEFASVRHAVPMLSLNNAFSPRDESGAYDHAETLAFNERVCKDLNQAQ 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184
             +T+EPK DG  +++ Y+ G F+ AA RGDG  GEDV+  I+ +  IP ++   NIP +
Sbjct: 118 TEYTIEPKFDGLAVSLLYQNGIFIQAATRGDGTIGEDVTENIKTVRNIPLKLHGKNIPNL 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           IEVRGEV + K DF  LN    A G+KP+ANPRNAA+G LR+LN      R L+FF +G+
Sbjct: 178 IEVRGEVLMLKADFATLNARQEAAGQKPFANPRNAAAGSLRQLNSRVAAERKLHFFGYGI 237

Query: 244 GKTSEIFAKGQY--EMLQKMRCLGF--PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +   +    Q   E L  ++ LGF  P  N    AN    ++  Y ++   R  LPY+I
Sbjct: 238 ARLDGVENPPQTHAEELLWLQELGFSLPTGNWHICANIAE-VLQQYEQLAEKRPNLPYEI 296

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+    Q++LG  +R+PRW I+HKF  ++A T +  ID+Q+GRTG +TPVARL+
Sbjct: 297 DGMVIKVNSLIEQEKLGFVSRAPRWAIAHKFPAEEAITIVEAIDVQVGRTGAITPVARLQ 356

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +++ 
Sbjct: 357 PVAVGGVVVTNATLHNQD---------EVAR--KDVRVGDSVIVRRAGDVIPEVVRVVLE 405

Query: 420 ER----------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
            R                 P    F  P  CP+C S + R+     G+ VA  RC+GG+ 
Sbjct: 406 RRPMVQELGADLFSETVEKPKFSAFRLPELCPVCNSPIERE----DGEAVA--RCSGGML 459

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED-PAFSIRIPADIFTLQR---RQQT 519
           C AQ+ + L HF +R A +I GLG +Q++   + +   +F+     DI  LQ+    + +
Sbjct: 460 CQAQRAQGLIHFSARKAMDIVGLGDRQIEALVEQDVLHSFADIYQLDIAKLQKIKDSKSS 519

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH------------------ 561
           +T   ENIL             I   R   L RF+F+LGIRH                  
Sbjct: 520 ATKWAENIL-----------TGIENSRKPLLSRFLFALGIRHVGESTAKQLANAFGDLAT 568

Query: 562 --------------VGAEIARSLAKYYL--SYQNFAQEI--------NNIIAHNNDD--- 594
                         +G  +A+S+A Y+   + Q    ++        + +++ N  +   
Sbjct: 569 VRHAPEPILACLPDIGGVVAQSIAHYFRQPAQQKLLDDLLAVGVEPQHAVLSTNVREFAT 628

Query: 595 ---WLSLIRVPLVGDIIAQAIVEF-----------------YQNPRNICAVEALLKEVS- 633
              W+S +    + +  AQ + +                  +QN  NI    ALL+EV  
Sbjct: 629 PARWISRLPNYKISEKRAQELWDLAGGSVEGLLSDKVLPIEWQNWCNIAENAALLREVGE 688

Query: 634 -----PSIG--RHEKNVSSEIEN----KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
                P  G    E  V   + N    K  V TGTL  ++R +A   +   G  VS  +S
Sbjct: 689 FLAMLPEFGATNAENAVLGSLNNLIAGKTFVLTGTLPTLKRDEAAAMIEAAGGKVSGSVS 748

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +KTD ++ GD  GSKLEKA  LGV +++E++FL +L
Sbjct: 749 KKTDFVVAGDAAGSKLEKALSLGVAVLSEDEFLAML 784


>gi|329959979|ref|ZP_08298475.1| DNA ligase [Bacteroides fluxus YIT 12057]
 gi|328533113|gb|EGF59882.1| DNA ligase [Bacteroides fluxus YIT 12057]
          Length = 665

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 242/709 (34%), Positives = 377/709 (53%), Gaps = 54/709 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++  L  E+  H+  YY  + P I D E+D        +    P+    +D N P  
Sbjct: 3   AKEKIDRLRAELHQHNYNYYVLNAPEISDKEFDDKMHELQNLEKEHPEY---QDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKID 135
           ++G ++N +  +V H  P LSL   ++  ++  F  R+     KK  N  F    E K D
Sbjct: 60  RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYDRV-----KKTLNEDFEICCELKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           GT I++ YE GK + A  RGDG  G+DV+  ++ I TIP VL  N P   E+RGE+ +  
Sbjct: 115 GTSISLTYEDGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNYPRSFEIRGEILMPW 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L    E+   G 
Sbjct: 175 ESFEMLNREREAREEPLFANPRNAASGTLKSQNSAVVASRKLDAYLYYL-LGEELPCDGH 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ     GF ++   ++A++   +  Y N   + R  LP   DG+V KV+    QK 
Sbjct: 234 YENLQMAGSWGFKISEHTKKASSLEEVFEYINYWDTERKNLPVATDGIVLKVNSLRQQKN 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 294 LGFTAKSPRWAIAYKFQAERALTRLNKVSYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  N R     +   F + 
Sbjct: 354 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKNARGMLLGEKVRFITH 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C +R++R      G+  AAH C    AC  Q   R++HF+SR A NI+GLG + +D 
Sbjct: 403 CPECGNRLIR----YEGE--AAHYCPNETACPPQIKGRIEHFISRKAMNIDGLGPETVDM 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I+  AD++ L+         I+N+   G+ S  N+ + I   + +  ER 
Sbjct: 457 FYR----LGLIKDTADLYDLK------ADDIKNLDRMGEKSAENIINGIAASKEVPFERV 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG  +A+ +AK +        +I  +I   N D  +L  +  +G+ IAQ+I+
Sbjct: 507 LFALGIRFVGETVAKKIAKSF-------TDIEELI---NTDLENLKNIDEIGEKIAQSII 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ NP N   V   LK     + R E+++S    ++  + +V +G      R + +E +
Sbjct: 557 TYFSNPFNRELV-GRLKAAGLQLFRKEEDLSGYTDKLTGQSIVISGVFTHHSRDEYKELI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ G+N G +KLEKAQ+LGVKIM+E++FL L+
Sbjct: 616 EKNGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLTLI 664


>gi|323705997|ref|ZP_08117567.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534611|gb|EGB24392.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 659

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 238/710 (33%), Positives = 378/710 (53%), Gaps = 52/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE   KEL     ++++H   YY   KP I D EYD + R    +   +P     + P
Sbjct: 1   MAIEDRIKELRD---KLNHHSYMYYVLDKPEISDYEYDMMMRELIELEEKYPQF---KTP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE        TH +P  SL   ++  +LR F  R+     +     + + +E
Sbjct: 55  DSPTQRVGGEPLKEFEPFTHVVPMQSLANAFSEGELRDFDRRV-----RASVGDVEYVVE 109

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + YE G F   + RGDG  GE+V+  ++ I +IP  L  ++  I  VRGEV
Sbjct: 110 FKIDGLSVELIYENGFFTVGSTRGDGIIGENVTNNLKTIKSIPLRLKDDLNLI--VRGEV 167

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ K  F  LN+E    G   +ANPRNAA+G LR+LNP     R L+ FV  L +   I 
Sbjct: 168 FMPKASFEKLNEERELNGESLFANPRNAAAGSLRQLNPKITAKRDLDIFVFNLQRIDGIE 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E L+ ++  GF V+  ++       ++   N ++ IR +L Y+ DG V KV++  
Sbjct: 228 LKTHAEALEFLKYQGFKVSPHIKVCGNIDEVIEDINYIRDIRDSLSYETDGAVVKVNDLE 287

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG  A+ PRW I+ K+  ++  T++ DI +Q+GRTG LTP A LEPV I G++++ 
Sbjct: 288 KREILGSTAKDPRWAIAFKYPTERQKTKVKDIVVQVGRTGALTPTAILEPVKIAGSIVSR 347

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYIK            +DIR+GD V++++AGE+IP+VV ++  ER    + F  
Sbjct: 348 ATLHNEDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVSVVAEERDGSEKFFIM 396

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C +  VR      G+ V   +CT GL C A+    + HF S+DA +I+GLG   
Sbjct: 397 PEVCPECGAATVR----LPGESVT--KCT-GLNCPAKLKRGIIHFASKDAMDIDGLGPAV 449

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     +      I   +D++ L+        ++      GD S  NL ++I + +   L
Sbjct: 450 IGQLLDNH----LIHNISDLYYLKYDDLVKLDRM------GDKSAKNLINAIEESKGRDL 499

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R IF LGI  +G++ A  LA ++ + ++  +            +  L  +  +G  +A 
Sbjct: 500 DRLIFGLGIDLIGSKAAGILASHFKTMESLEKAT----------FEELTEIEEIGPKMAD 549

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++V F++  +N+  ++ L         +   NV+   +    V TGTL+K  R +A+  +
Sbjct: 550 SVVAFFKEKQNLDIIDRLKAAGVNMRKKDAINVNDNFKGLTFVLTGTLEKYTRDEAKRLI 609

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + G  V+  +S+KTD ++VG +PGSKL KAQ+LGVKI+NEEQF  +L+Q
Sbjct: 610 EERGGKVTGSVSKKTDYVVVGADPGSKLSKAQELGVKILNEEQFENMLKQ 659


>gi|16329180|ref|NP_439908.1| NAD-dependent DNA ligase LigA [Synechocystis sp. PCC 6803]
 gi|7674015|sp|P72588|DNLJ_SYNY3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|1651660|dbj|BAA16588.1| DNA ligase [Synechocystis sp. PCC 6803]
          Length = 669

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 241/699 (34%), Positives = 380/699 (54%), Gaps = 63/699 (9%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P++ DS YD L R    +    P+L     P+ P  ++G +       V H+I
Sbjct: 20  AYYVLDAPVMEDSVYDQLYRELQRLEAENPELI---TPDSPTQRVGEQPASQFRSVAHNI 76

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQK--KDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
           P  SLE  +N+++L+++  R    WQ+         +  E KIDG+ I + YE G  V  
Sbjct: 77  PLYSLENAFNVQELQQWQER----WQRIAPTIEKAEYVCELKIDGSAIALTYENGLLVRG 132

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
             RGDG +GE++S  I+ I +IP  L+L N P  +EVRGE ++   +F  +N E  A G 
Sbjct: 133 VTRGDGTTGEEISQNIKTIRSIPVKLNLDNPPPTVEVRGEAFLPLEEFNRINHEREAQGE 192

Query: 211 KPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL---GKTSEIFAKGQYEMLQKMRCLGF 266
             +ANPRNAA+G LR+L+P  +  R L FF + L   G+  +I  + Q++ L+ ++  GF
Sbjct: 193 SLFANPRNAAAGTLRQLDPKIVHQRRLQFFAYTLHLPGQEDKI--QSQWQALEYLKKAGF 250

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
            VN   +       +V+Y+ + +  R  LPY  DG+V K++++ LQ++LG   + PRW I
Sbjct: 251 MVNPHCQLCKGLDEVVAYFEDWEGARQRLPYMTDGVVVKINQYPLQRELGFTQKFPRWAI 310

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           + K+  ++  T +  I++ +GRTG +TP+A +EPV + G  +  ATLHN+D I+ L    
Sbjct: 311 ALKYPAEETPTVVKAIEVNVGRTGAVTPLAVMEPVQLAGTTVQRATLHNQDRIQEL---- 366

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                  DIRVGD V++++AGE+IP+VV ++   R  +  P+ FPS CP C S +VR L 
Sbjct: 367 -------DIRVGDTVIIRKAGEIIPEVVRVMTELRPENTTPYIFPSHCPACGSPLVRPLE 419

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                  A  RC    +CSA     L H+ SR+A +I+GLG++ +    ++      +  
Sbjct: 420 E------AVIRCVNS-SCSAILQGSLIHWASRNALDIQGLGEKVVITLLENR----LVNS 468

Query: 507 PADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
            AD++ LQ         +E +LG   F   S   L  +I   ++    R +F LGIRHVG
Sbjct: 469 VADLYGLQ---------VEQLLGLERFAQKSAEKLIAAIEVSKSQPWSRILFGLGIRHVG 519

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A+ L++ + + +  +Q      A   D    L  V  +G  IA+A+V +++NP N  
Sbjct: 520 QVNAKLLSQQFPTVEKLSQ------ASIPD----LEGVYGIGPEIAEAVVNWFRNPGNQQ 569

Query: 624 AVEAL--LKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
            ++ L  L  V  + G    K  S +++ K  V TGTL  + R +AQE + Q G  V++ 
Sbjct: 570 LIQDLEELGLVLANQGIDQTKTDSGKLKGKTFVLTGTLPNLSRLEAQELIEQSGGKVTSS 629

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +S KTD +++GD PGSK  KA+ LG+K+++E +FL LL+
Sbjct: 630 VSTKTDYVLLGDKPGSKAAKAESLGIKLLSEAEFLQLLE 668


>gi|116049473|ref|YP_791724.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122258581|sp|Q02K12|DNLJ_PSEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115584694|gb|ABJ10709.1| DNA ligase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 794

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 335/623 (53%), Gaps = 50/623 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P ++     PEI+
Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQ    P  CP+C S V R    K  K        A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++      D    +  PAD++TL   Q      +  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYEQ------VFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621
             +P VG  +A  I  F+ +  N
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S       ++ II     DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660
           A+++ +F+  P N+    A+EA L+E     G H ++    +E   L     V TGTL+ 
Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQTWVLTGTLEA 729

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+  L L  +
Sbjct: 730 MSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDE 789

Query: 721 YNTT 724
           +   
Sbjct: 790 HGVA 793


>gi|308388851|gb|ADO31171.1| DNA ligase [Neisseria meningitidis alpha710]
 gi|325202538|gb|ADY97992.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240149]
 gi|325207712|gb|ADZ03164.1| DNA ligase, NAD-dependent [Neisseria meningitidis NZ-05/33]
          Length = 841

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 265/825 (32%), Positives = 404/825 (48%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D     + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF ALN     
Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y +M+  R  LPY+IDG+V KV+  + Q++LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D +  
Sbjct: 338 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                      +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTSTTKI 524
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++T+   +
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETTDKTV 556

Query: 525 ----------ENILGFGDVS------VTNLYDSINKRRNISLERFIFSLGIRH------- 561
                      ++   G           N+   I   +   L RF+F+LGIRH       
Sbjct: 557 AESDQTPSEGSSVGASGKHKKQPVKWAENILGGIESGKTPELARFLFALGIRHVGERTAK 616

Query: 562 -------------------------VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                    +G  +A S+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQAM-IDELLAAGVAPQT 675

Query: 597 SLIRVP-----------------LVGDIIAQAI-------VEFYQN-------------- 618
             + +P                  + +  AQA+       +E  QN              
Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSE 735

Query: 619 PRNICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           P+N   +E L    +  PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840


>gi|110669547|ref|YP_659358.1| NAD-dependent DNA ligase LigA [Haloquadratum walsbyi DSM 16790]
 gi|109627294|emb|CAJ53784.1| DNA ligase (NAD) [Haloquadratum walsbyi DSM 16790]
          Length = 770

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 242/721 (33%), Positives = 383/721 (53%), Gaps = 56/721 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE LS E A ++ + L + I  HD  YY  + PII D  YD L  R      A  D+  
Sbjct: 99  PIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILFDRL----QALEDIFN 154

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            +    P  ++GGE    L  V H    LS+++   ++ +R F  R+           + 
Sbjct: 155 LDTEASPTRRVGGEPLDELETVEHVTSMLSIDQSTAVDSVRDFDERVRDVV-----GDLE 209

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  EPK DG  + + YE G+++ AA RGDG+ G+DV+A +  +  +P  L  + P  + V
Sbjct: 210 YICEPKFDGLSVEVIYEDGEYIRAATRGDGNRGDDVTAQVETVGAVPLKLHGDYPSYLAV 269

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEVY+ K  F   N E I    KP+ANPRNAA+G LR+L+P  +  R L+ F + +   
Sbjct: 270 RGEVYMPKAGFREYNRERIECDEKPFANPRNAAAGTLRQLDPGVVAERPLSCFFYDILDA 329

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           +E+    Q+  L  ++  G   N+ + + ++    ++Y +++K+ R+ L Y+IDG V KV
Sbjct: 330 TEL-PPDQWTTLNDLQSWGLRTNDRISRVDSIDDAIAYRDQLKAARAELNYEIDGTVIKV 388

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++   ++ LG  +RS RW  ++KF  +   T + DI +Q+GRTG LTPVA L+PV++GG 
Sbjct: 389 NDRGNREILGATSRSVRWAFAYKFPPRAEITHITDIVVQVGRTGRLTPVALLDPVDVGGV 448

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ A+LHN + IK L            +  GD V V+RAG+VIP+V ++          
Sbjct: 449 TVSRASLHNPEEIKRL-----------SVNSGDEVRVRRAGDVIPEVAEVTQKRA---TG 494

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F+FP+ CPIC S V +D     G L     CTGGL C AQ +  + H+ SR A +I+GL
Sbjct: 495 TFNFPNQCPICHSSVEQD-----GPLAF---CTGGLTCDAQLVRTIVHYGSRSALDIDGL 546

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+Q+++   +S      I   AD++TL      S   +  + G+G  S  NL  +I++ +
Sbjct: 547 GEQRVEQLVES----GVIGELADLYTL------SVADLSKLDGWGTTSAENLIQAISETQ 596

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SL  F+  LGI  VG  IAR+LA    ++ NF   I+        D  +L  +  +G 
Sbjct: 597 TPSLTDFLVGLGIPEVGPTIARNLAG---TFDNFDAIIDA-------DEAALREIEDIGP 646

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++  I EF+ N +N  A++ LL   V+P   +     ++ + +   VFTG+L  + R  
Sbjct: 647 TVSTHISEFFTNEQNRAAIDNLLSAGVTPQTQQSTATTNAPLSDLTFVFTGSL-SVPRTT 705

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           A  Y+ + G   +  +S  TD +++GDNPGS K   A++  V  ++E +F  LL +++ T
Sbjct: 706 ATTYIERHGGNATGSVSSNTDYLVIGDNPGSTKRIDAERNDVPEIDETEFTELLAEHDDT 765

Query: 725 L 725
           L
Sbjct: 766 L 766


>gi|325127826|gb|EGC50734.1| DNA ligase, NAD-dependent [Neisseria meningitidis N1568]
          Length = 841

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 264/825 (32%), Positives = 404/825 (48%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      ++ H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEIRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D     + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           + AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV + K DF ALN     
Sbjct: 161 IQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +  + F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQDGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV+  + Q +LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D +  
Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                      +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++T+  T 
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556

Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562
              + +     SV               N+   I   +   L RF+F+LGIRHV      
Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPELARFLFALGIRHVGERTAK 616

Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                     G  +ARS+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675

Query: 597 SLIRVP-----------------LVGDIIAQAIVEF-----------------YQNPRNI 622
             + +P                  + +  AQA+ E                  +Q  R+ 
Sbjct: 676 QAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEGLQTDKALPTDWQAWRSE 735

Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
               ALL+ +       PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840


>gi|254234624|ref|ZP_04927947.1| DNA ligase [Pseudomonas aeruginosa C3719]
 gi|126166555|gb|EAZ52066.1| DNA ligase [Pseudomonas aeruginosa C3719]
          Length = 794

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 335/623 (53%), Gaps = 50/623 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P ++     PEI+
Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQ    P  CP+C S V R    K  K        A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++      D    +  PAD++TL   Q      +  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYEQ------VFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621
             +P VG  +A  I  F+ +  N
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S       ++ II     DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660
           A+++ +F+  P N+    A+EA L+E     G H ++    +E   L     V TGTL+ 
Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQTWVLTGTLEA 729

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+  L L  +
Sbjct: 730 MSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDE 789

Query: 721 YNTT 724
           +   
Sbjct: 790 HGVA 793


>gi|240122918|ref|ZP_04735874.1| putative DNA ligase [Neisseria gonorrhoeae PID332]
          Length = 823

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 275/844 (32%), Positives = 412/844 (48%), Gaps = 176/844 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P I D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 10  ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EPK
Sbjct: 64  GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV 
Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K DF  LN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F
Sbjct: 184 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 242

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + NG      F  I   +++Y  M+  R  LPY+IDG V KV
Sbjct: 243 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 301 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I   R     
Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPTRCPICRSEIERE----EGEAVA 465

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519

Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549
             TLQ+ ++T+     EN  G      GD+S                N+   I   +   
Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579

Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577
           L RF+F+LGIRHVG                                  +ARS+A ++   
Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615
           +  A  I+ ++A         + +P                  + +  AQA+ E      
Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698

Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654
                       +Q  R+     ALL+ +       PS     +    ++  +  K  V 
Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + 
Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 818

Query: 715 LFLL 718
           L LL
Sbjct: 819 LTLL 822


>gi|268681538|ref|ZP_06148400.1| DNA ligase [Neisseria gonorrhoeae PID332]
 gi|268621822|gb|EEZ54222.1| DNA ligase [Neisseria gonorrhoeae PID332]
          Length = 829

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 275/844 (32%), Positives = 412/844 (48%), Gaps = 176/844 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P I D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 16  ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 69

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EPK
Sbjct: 70  GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 129

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV 
Sbjct: 130 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 189

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K DF  LN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F
Sbjct: 190 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 248

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + NG      F  I   +++Y  M+  R  LPY+IDG V KV
Sbjct: 249 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 307 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I   R     
Sbjct: 367 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 415

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 416 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPTRCPICRSEIERE----EGEAVA 471

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 472 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 525

Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549
             TLQ+ ++T+     EN  G      GD+S                N+   I   +   
Sbjct: 526 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 585

Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577
           L RF+F+LGIRHVG                                  +ARS+A ++   
Sbjct: 586 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 645

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615
           +  A  I+ ++A         + +P                  + +  AQA+ E      
Sbjct: 646 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 704

Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654
                       +Q  R+     ALL+ +       PS     +    ++  +  K  V 
Sbjct: 705 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 764

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + 
Sbjct: 765 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 824

Query: 715 LFLL 718
           L LL
Sbjct: 825 LTLL 828


>gi|268596277|ref|ZP_06130444.1| DNA ligase [Neisseria gonorrhoeae FA19]
 gi|268603059|ref|ZP_06137226.1| DNA ligase [Neisseria gonorrhoeae PID1]
 gi|291044437|ref|ZP_06570146.1| DNA ligase [Neisseria gonorrhoeae DGI2]
 gi|268550065|gb|EEZ45084.1| DNA ligase [Neisseria gonorrhoeae FA19]
 gi|268587190|gb|EEZ51866.1| DNA ligase [Neisseria gonorrhoeae PID1]
 gi|291011331|gb|EFE03327.1| DNA ligase [Neisseria gonorrhoeae DGI2]
          Length = 829

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 275/844 (32%), Positives = 412/844 (48%), Gaps = 176/844 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P I D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 16  ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 69

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EPK
Sbjct: 70  GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 129

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV 
Sbjct: 130 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 189

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K DF  LN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F
Sbjct: 190 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 248

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + NG      F  I   +++Y  M+  R  LPY+IDG V KV
Sbjct: 249 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 307 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I   R     
Sbjct: 367 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 415

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 416 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 471

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 472 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 525

Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549
             TLQ+ ++T+     EN  G      GD+S                N+   I   +   
Sbjct: 526 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 585

Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577
           L RF+F+LGIRHVG                                  +ARS+A ++   
Sbjct: 586 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 645

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615
           +  A  I+ ++A         + +P                  + +  AQA+ E      
Sbjct: 646 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 704

Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654
                       +Q  R+     ALL+ +       PS     +    ++  +  K  V 
Sbjct: 705 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 764

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + 
Sbjct: 765 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 824

Query: 715 LFLL 718
           L LL
Sbjct: 825 LTLL 828


>gi|78188256|ref|YP_378594.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3]
 gi|123743484|sp|Q3ATX4|DNLJ_CHLCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78170455|gb|ABB27551.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3]
          Length = 667

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/712 (32%), Positives = 378/712 (53%), Gaps = 50/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I  A + ++ L QEI  H+  Y+  +KP + D E+D L     A+   FPDL     P
Sbjct: 1   MTIIDASERIAQLRQEIERHNYLYFNEAKPELSDYEFDKLLEELMALEREFPDLL---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      VTH  P LSL   ++  ++ +F  R+ +    ++ +      E
Sbjct: 58  DSPSQRVGGTITKEFPVVTHREPMLSLANTYSAGEVAEFYNRVAKLLAAENVHKQEMVAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++ Y  G  V  A RGDG  G+D++  IR I +IP  L   +   +EVRGE+
Sbjct: 118 LKFDGVAISLLYRDGVLVRGATRGDGVQGDDITPNIRTIASIPLRLHQPLAGEVEVRGEI 177

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL-GKTSEI 249
           ++ K DF  LND      R  +ANPRNA +G L+  +  ++ R  +NF  + L G   E 
Sbjct: 178 FMRKEDFEQLNDNRPEEER--FANPRNATAGTLKLQDSAEVARRRMNFVAYYLKGLKDET 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                   L K+  LGF      R+  T   I ++ NE +  R  LPY+ DG+V K++  
Sbjct: 236 L--DHVSRLHKLEALGFTTGGHYRRCKTIEEINTFINEWEEKRWKLPYETDGVVLKLNNV 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            L +QLG  A+SPRW I++K+  +QA T+L ++  Q+GR G +TPVA L PV + G+ ++
Sbjct: 294 QLWEQLGATAKSPRWAIAYKYPAQQARTQLCNVVFQVGRIGTITPVAELTPVLLAGSTVS 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            +TLHN D I+ L            + + D V+++++GEVIPKVV  + +ER  DA   +
Sbjct: 354 RSTLHNFDEIERL-----------SVMILDYVMIEKSGEVIPKVVRTLPDERPADAHAIA 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +++  N        +  C     C AQ   RL HF SR+A +I+GLG  
Sbjct: 403 IPTHCPECDTPLIKPENE------VSWYCPNEEHCPAQIRGRLLHFASRNAMDIKGLG-- 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
             D   +       +    D++ LQ  Q      +E +   G  S  NL  ++++ R  S
Sbjct: 455 --DALVEQLVAWGLVHDVGDLYLLQEPQ------LERMERMGKKSAQNLIRALDESRTRS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +++LGIRHVG   AR LA  + +     Q         N++ L+   VP +G  +A
Sbjct: 507 YDRLLYALGIRHVGRATARELAHAFPTLDALMQ--------ANEERLA--EVPDIGTTVA 556

Query: 610 QAIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           Q+IV+F+  P +   V+ L +   +++ S  + E+ V+   E   L+FTGTL++  R +A
Sbjct: 557 QSIVDFFAKPSSRQLVDKLREARLQLAASASKIEQ-VNRNFEGMSLLFTGTLERYTRQQA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            E V + G  V   +S+KT +++ G + GSKL+KA +LGV++++E++F+ ++
Sbjct: 616 AELVVERGGRVVESISKKTSLLVAGRDGGSKLDKAHKLGVRVISEDEFMGMM 667


>gi|120602092|ref|YP_966492.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
 gi|166215378|sp|A1VC99|DNLJ1_DESVV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|120562321|gb|ABM28065.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
          Length = 680

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 246/719 (34%), Positives = 384/719 (53%), Gaps = 57/719 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I Q +   + L  E++ H+  YY+   P I D+EYD L R    +   +P L    D  
Sbjct: 3   NIPQHQSRAAWLRAELARHNRLYYELDTPEISDAEYDTLYRELVNLETLWPALM---DEA 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GGE+   L K  H++   SL+  ++ ++   FI R+Y    +   +   F  +P
Sbjct: 60  SPTQRVGGEVLDRLEKQAHTMRMYSLDNAFSRDEWGAFIQRMYNTLPETPSS---FWCDP 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  + + YE G F  A  RG+G  GE V+A +R +  +P R+   N+P  +EVRGEV
Sbjct: 117 KMDGLALEVIYENGVFTSALTRGNGAEGEVVTAAMRTVRNLPLRLRGNNVPHRLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
            I+K DF  LN    AVG K +ANPRNAA+G +R+L+ T IT  R L F  +G+G+    
Sbjct: 177 VIAKADFEQLNARQSAVGGKVFANPRNAAAGSVRQLD-TSITAGRPLQFLAYGVGQVVLD 235

Query: 250 FAKGQY----EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                +    +++ ++R  GF      R   +   + +YY  + + R +L  +IDG+V K
Sbjct: 236 GGTAPWTTHSDLMARLREWGFDSPPEGRLCTSPDEVWAYYEMLGARRESLAIEIDGVVAK 295

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   Q+ LG  AR+PRW ++ KF   Q  TRL DI +Q+GRTG+LTPVA LEPV +GG
Sbjct: 296 VDDTEAQEALGFTARAPRWALALKFPAMQVRTRLQDIRVQVGRTGVLTPVAILEPVRVGG 355

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ ATLHN   I+            + + +GD VLV+RAG+VIP+VV  +V +R    
Sbjct: 356 VEVSRATLHNAYEIE-----------DKGLMLGDMVLVQRAGDVIPEVVRPLVEDRTGGE 404

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF FP+ CP C S VV   N +      AHRC   ++C A + + + HFVS+   ++ G
Sbjct: 405 RPFVFPTTCPECGS-VVHKPNDEV-----AHRCI-NVSCPAVRRQSIIHFVSKAGLDVRG 457

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN-K 544
            G+  +         A  +   AD+F+L      +T  +      G  S  N   S++  
Sbjct: 458 FGEHIVQQLVD----AGRVTTAADLFSL------TTVDLMGFERMGPTSAANAIASLDAA 507

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           R   +L R I +LGIRHVG + AR+LA +++          ++ A    D   L+ +P +
Sbjct: 508 RTGATLARLICALGIRHVGEQTARTLATHFV----------DLDAMRKADGEKLLHLPDI 557

Query: 605 GDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           G  +A +I  F+ N  NI  +E L    L    P          S+++  KL+FTG+LQ+
Sbjct: 558 GPEVAASIRCFFDNQSNIELLEQLRDKGLWPRKPDANGPFVREGSQLQGLKLLFTGSLQR 617

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A+      GA V + +S+  D+I+ G + GSKL++A+ LG+ +++E+ F  LL+
Sbjct: 618 MSRSEAKRMAEAAGAHVVSNVSKSLDMIVAGADAGSKLDQAKSLGLHVIDEDAFANLLK 676


>gi|288572809|ref|ZP_06391166.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568550|gb|EFC90107.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 674

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/704 (33%), Positives = 371/704 (52%), Gaps = 55/704 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           SL++EI+ HD  YY    P I DS YD + R    +    P L   + P+    ++GG  
Sbjct: 12  SLKKEIARHDRLYYVLDSPEIDDSSYDRMMRELLELEREHPTLVSDDSPS---RRVGGRP 68

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                KV HS P LSL+ ++++ +LR F++R          +S  +  E KIDG  +++ 
Sbjct: 69  LDGFLKVVHSHPMLSLDDVFDVSELRSFLSR-----ATGPVSSFPWVCELKIDGLAVSLI 123

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE G FV  A RGDG  GEDV++ +  + ++P  L++++P  +EVRGEVY++KN F  LN
Sbjct: 124 YEDGVFVGGATRGDGSVGEDVTSNLLTVRSLPLRLNIDVPGRLEVRGEVYMAKNSFARLN 183

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           +     G   +ANPRNAA+G LR+L+P     R L+ FV+ +    E     Q ++L  +
Sbjct: 184 ERREEKGDPLFANPRNAAAGSLRQLDPRVAAERRLDLFVYAVVSPEERGINSQSDLLSWL 243

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           +  G PV +     +    +  +    +  R +L Y  DG+V K D      +LG  AR+
Sbjct: 244 KKAGLPVQDAWELCSDLDEVEEFVARWQEERFSLSYVTDGVVVKADPVEQWGRLGRTARA 303

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW +++K+  ++ +T L +I+I +GRTG +TPVA LEPV + G+++  A+LHNED I+ 
Sbjct: 304 PRWAVAYKYPPEEKTTVLKEIEISVGRTGAMTPVAILEPVQLAGSVVRRASLHNEDEIR- 362

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +D+R+GDRV V++AGE+IP++V +    R+    PF  P  CPIC S  
Sbjct: 363 ----------RKDVRIGDRVKVRKAGEIIPEIVSVDSEARNGTEIPFEMPRNCPICGSEA 412

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           VR  +       +A RC    +C AQ  E L+HF SR   +I GLG++       S    
Sbjct: 413 VRLPDE------SAWRCPNK-SCPAQMNEELRHFASRGCMDIRGLGERVASQLVGS---G 462

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
           F +R  AD++ L+  Q  S  ++      G  S +NL  +I   ++  L   +  LGIRH
Sbjct: 463 F-VRDLADLYELKEEQIISLDRM------GPKSASNLISAIRGSKDRPLAALLAGLGIRH 515

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG  +A  L + Y S +          A    D   L  +  VG  IA ++  F+ +  N
Sbjct: 516 VGKGVAELLVERYGSME----------ALRRADPEELGSIEGVGPAIAASLEAFFSDDGN 565

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAV 676
           I  ++ L+      +   E+   +  + K L     VFTG L++  R +AQ+ V  +G  
Sbjct: 566 IRTLDRLMDH---GVRMEERRPETSSDGKLLSGMTFVFTGELKRASRSEAQKLVKSMGGK 622

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            ++ +S KT  ++ G++PGSKL+KA  LG+ +++E+ F  +++ 
Sbjct: 623 ATSSVSGKTSYVVAGESPGSKLDKAVSLGIPVLDEDGFYEMVES 666


>gi|240080125|ref|ZP_04724668.1| putative DNA ligase [Neisseria gonorrhoeae FA19]
 gi|240117363|ref|ZP_04731425.1| putative DNA ligase [Neisseria gonorrhoeae PID1]
 gi|260441105|ref|ZP_05794921.1| putative DNA ligase [Neisseria gonorrhoeae DGI2]
          Length = 823

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 275/844 (32%), Positives = 412/844 (48%), Gaps = 176/844 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P I D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 10  ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EPK
Sbjct: 64  GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV 
Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K DF  LN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F
Sbjct: 184 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 242

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + NG      F  I   +++Y  M+  R  LPY+IDG V KV
Sbjct: 243 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 301 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I   R     
Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 465

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519

Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549
             TLQ+ ++T+     EN  G      GD+S                N+   I   +   
Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579

Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577
           L RF+F+LGIRHVG                                  +ARS+A ++   
Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615
           +  A  I+ ++A         + +P                  + +  AQA+ E      
Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698

Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654
                       +Q  R+     ALL+ +       PS     +    ++  +  K  V 
Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + 
Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 818

Query: 715 LFLL 718
           L LL
Sbjct: 819 LTLL 822


>gi|330960233|gb|EGH60493.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 787

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/623 (35%), Positives = 339/623 (54%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137
            +  +V H +P LSL   +   DLR+F  R+         +      ++ ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGAGSTVEYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     PE++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPEVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + VG K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L  ++  G PV+  ++ AN     ++YY ++   R +L Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLNALKKWGMPVSRELKLANGVEECLAYYKDIGERRLSLSYEIDGVVFKVNSLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++   R   A+P   P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPQTAKPVEVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSQVERTQLVKRSKGKETISEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  +I   +  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSKQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P +G  +
Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDIGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AHEIHSFFEDEHNRNVIDALLGE 598



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A          Q  A++   + A  + DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAA----------QKLAEKFGTLEAVISADWLDMRQA--LPE 663

Query: 607 IIAQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+    N      +EA LK+     G H ++    +E   L     V TGTL
Sbjct: 664 KQAKSVRDFFDANANAERARAIEAQLKD----FGMHWRSEKKAVEGLPLAGQTWVLTGTL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++EE  L  L
Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEEALLKRL 779

Query: 719 QQYNTTL 725
            +    +
Sbjct: 780 TELGVAV 786


>gi|229823252|ref|ZP_04449321.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271]
 gi|229787418|gb|EEP23532.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271]
          Length = 671

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 242/714 (33%), Positives = 383/714 (53%), Gaps = 68/714 (9%)

Query: 16  QAR-KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           QAR +E+  L  + +YH   YY   + ++ D+ YDAL R  + I  A P+      P+ P
Sbjct: 9   QARLEEVKHLLNDYAYH---YYVLDQSLVSDASYDALYRELEEIEAAHPEWI---TPDSP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G ++     KV H+    SL   ++ E++ +FI R+     ++ +  + F  E KI
Sbjct: 63  TQRVGDQLLEGFSKVAHAESMYSLGNAFSPEEVTQFIERV----TQQVEGPVSFMCECKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y+ G FV  A RGDG  GED++  +R I ++P  L  N+   +EVRGE Y+ 
Sbjct: 119 DGLAIALTYQDGVFVRGATRGDGTIGEDITQNLRTIRSLPLRLRQNLS--VEVRGECYMP 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           K  FLALN+E  A G++ + NPRNAA+G LR+L+P  +  R LN F++    T E   + 
Sbjct: 177 KAVFLALNEEREAQGQEIFKNPRNAAAGGLRQLDPRAVADRQLNIFLYSAVYTDEFHPES 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q  +      LG   N   R+  T   ++ Y   +   R  LPY+IDG+V KV+    Q+
Sbjct: 237 QAGLFAAFEQLGLRTNPLRRECQTAEEVIDYIQMIGQQRHDLPYEIDGVVIKVNHIDQQQ 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   ++PRW I++KF  ++A T L +++  +GRTG++TP A ++PV + G  +  A+L
Sbjct: 297 ALGFTVKAPRWAIAYKFPAEEAVTTLREVEWTVGRTGVVTPTAIMDPVPLAGTTVQRASL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L           D+R+GD+V + +AG++IP++  +++ +R  D+QP + P+ 
Sbjct: 357 HNVDLIESL-----------DVRIGDQVTIHKAGDIIPEITSVLLAKRPQDSQPLAIPTH 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP CQ+ +VR      G+ VA  RC   L C AQ+L  L HFVSR A NI+GLG + L+ 
Sbjct: 406 CPECQTALVRQ-----GEEVAL-RCP-NLVCPAQRLALLSHFVSRGAMNIQGLGPRILNQ 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              S+    ++    D++ L      S  KI+      + S   L  +I   ++ S ER 
Sbjct: 459 LVASQ----AVTELDDLYRLSLEDLLSLDKIQ------EKSAQKLLAAIEASKSNSAERL 508

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIRHVGA+ AR + + +      +Q     I            +  VG II+Q++V
Sbjct: 509 LFGLGIRHVGAKAARLVLQVFGDLNRLSQATAEEIGA----------IEGVGPIISQSLV 558

Query: 614 EFYQNPRNICAVEALLKEVSPS------IGRHEKNVS-SEIEN-----KKLVFTGTLQKI 661
           ++      + + +A+LK ++ +       G     V+  E  N     K +V TGT++  
Sbjct: 559 QYL----TLESSQAMLKRLAEAGVNLTYQGPQPLEVAQGETANDFWLGKTVVLTGTMESY 614

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            R +A+E +   GA V+  +S+KTD ++ G   GSKL KA+ LGV I++E  FL
Sbjct: 615 SRSEAKELLEARGAKVTGSVSKKTDYLVAGQEAGSKLSKAESLGVTILDEASFL 668


>gi|325143946|gb|EGC66256.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240013]
 gi|325206489|gb|ADZ01942.1| DNA ligase, NAD-dependent [Neisseria meningitidis M04-240196]
          Length = 841

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 267/825 (32%), Positives = 406/825 (49%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+    + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALELNHPEF---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D  +  + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF ALN     
Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y +M+  R  LPY+IDG+V KV+  + Q++LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D    
Sbjct: 338 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                +V R  +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTSTTKI 524
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++T+   +
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETTDKTV 556

Query: 525 ----------ENILGFGDVS------VTNLYDSINKRRNISLERFIFSLGIRH------- 561
                      ++   G           N+   I   +   L RF+F+LGIRH       
Sbjct: 557 AESDQTPSEGSSVGASGKHKKQPVKWAENILGGIESGKTPELARFLFALGIRHVGERTAK 616

Query: 562 -------------------------VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                    +G  +A S+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQAM-IDELLAAGVAPQT 675

Query: 597 SLIRVP-----------------LVGDIIAQAI-------VEFYQN-------------- 618
             + +P                  + +  AQA+       +E  QN              
Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSE 735

Query: 619 PRNICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           P+N   +E L    +  PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV I++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840


>gi|296451892|ref|ZP_06893609.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08]
 gi|296879713|ref|ZP_06903688.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07]
 gi|296259274|gb|EFH06152.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08]
 gi|296429302|gb|EFH15174.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07]
          Length = 677

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 229/706 (32%), Positives = 389/706 (55%), Gaps = 52/706 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N+
Sbjct: 7   KDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTNR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E KIDG 
Sbjct: 64  VGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK++
Sbjct: 120 SVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKDN 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    +   +   +
Sbjct: 178 FRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEDYDLESHSD 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++G
Sbjct: 238 SLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLEYEIDGMVIKVNNIKQRDEMG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHNE
Sbjct: 298 YTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHNE 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP+
Sbjct: 358 DYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCPV 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C    +R      G+  AA +C   ++C AQ    + HFVSRDA NI+GLG+  +     
Sbjct: 407 CSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLLN 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                   +I  D+  L   ++    ++E +   G+ S  NL +SI K +   L R I  
Sbjct: 460 E-------KIIQDVSDLYYIKKEDVVELERM---GEKSADNLINSIEKSKENDLWRLING 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI+ +G + A+ LA       NF ++++++++  ++    L  +   G I+A ++VEF+
Sbjct: 510 LGIKFIGVKAAKILA------YNF-KDLDDVMSATSE---QLEELEEFGSIMANSVVEFF 559

Query: 617 QNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +  +N+  +   LK V   + S+    + V    E  K+V TGTL  ++R+ A++ + + 
Sbjct: 560 KEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEKR 618

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 619 GGKATSSVSKSTTFVLAGEEAGSKLAKANDLGIKVIDEERFLELLK 664


>gi|166215834|sp|Q18E49|DNLJ_HALWD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 736

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 242/721 (33%), Positives = 383/721 (53%), Gaps = 56/721 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE LS E A ++ + L + I  HD  YY  + PII D  YD L  R      A  D+  
Sbjct: 65  PIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILFDRL----QALEDIFN 120

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            +    P  ++GGE    L  V H    LS+++   ++ +R F  R+           + 
Sbjct: 121 LDTEASPTRRVGGEPLDELETVEHVTSMLSIDQSTAVDSVRDFDERVRDVV-----GDLE 175

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  EPK DG  + + YE G+++ AA RGDG+ G+DV+A +  +  +P  L  + P  + V
Sbjct: 176 YICEPKFDGLSVEVIYEDGEYIRAATRGDGNRGDDVTAQVETVGAVPLKLHGDYPSYLAV 235

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEVY+ K  F   N E I    KP+ANPRNAA+G LR+L+P  +  R L+ F + +   
Sbjct: 236 RGEVYMPKAGFREYNRERIECDEKPFANPRNAAAGTLRQLDPGVVAERPLSCFFYDILDA 295

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           +E+    Q+  L  ++  G   N+ + + ++    ++Y +++K+ R+ L Y+IDG V KV
Sbjct: 296 TEL-PPDQWTTLNDLQSWGLRTNDRISRVDSIDDAIAYRDQLKAARAELNYEIDGTVIKV 354

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++   ++ LG  +RS RW  ++KF  +   T + DI +Q+GRTG LTPVA L+PV++GG 
Sbjct: 355 NDRGNREILGATSRSVRWAFAYKFPPRAEITHITDIVVQVGRTGRLTPVALLDPVDVGGV 414

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ A+LHN + IK L            +  GD V V+RAG+VIP+V ++          
Sbjct: 415 TVSRASLHNPEEIKRL-----------SVNSGDEVRVRRAGDVIPEVAEVTQKRA---TG 460

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F+FP+ CPIC S V +D     G L     CTGGL C AQ +  + H+ SR A +I+GL
Sbjct: 461 TFNFPNQCPICHSSVEQD-----GPLAF---CTGGLTCDAQLVRTIVHYGSRSALDIDGL 512

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+Q+++   +S      I   AD++TL      S   +  + G+G  S  NL  +I++ +
Sbjct: 513 GEQRVEQLVES----GVIGELADLYTL------SVADLSKLDGWGTTSAENLIQAISETQ 562

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SL  F+  LGI  VG  IAR+LA    ++ NF   I+        D  +L  +  +G 
Sbjct: 563 TPSLTDFLVGLGIPEVGPTIARNLAG---TFDNFDAIIDA-------DEAALREIEDIGP 612

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++  I EF+ N +N  A++ LL   V+P   +     ++ + +   VFTG+L  + R  
Sbjct: 613 TVSTHISEFFTNEQNRAAIDNLLSAGVTPQTQQSTATTNAPLSDLTFVFTGSL-SVPRTT 671

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           A  Y+ + G   +  +S  TD +++GDNPGS K   A++  V  ++E +F  LL +++ T
Sbjct: 672 ATTYIERHGGNATGSVSSNTDYLVIGDNPGSTKRIDAERNDVPEIDETEFTELLAEHDDT 731

Query: 725 L 725
           L
Sbjct: 732 L 732


>gi|307297347|ref|ZP_07577153.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916607|gb|EFN46989.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 665

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 237/704 (33%), Positives = 386/704 (54%), Gaps = 47/704 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+ARK +  L +EI YH   YY    P I DSEYD L R    +   +P+L   + P
Sbjct: 2   ITFEEARKRIDELRKEIDYHAYRYYVLDDPEIPDSEYDNLLRTLIDLEEQYPEL---KTP 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +   S  +V H     SL+  ++ E++ +F  R+    Q +    + +  E
Sbjct: 59  DSPSIRVGLKPVASFKEVVHEYRLFSLDNTYSEEEVLQFDRRVREELQIE---IVRYMCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I+++Y+ G  V  A RG+G  GEDV+  IRAI +IP  L  ++   +EVRGEV
Sbjct: 116 LKIDGLSISVKYDNGLLVRGATRGNGFVGEDVTENIRAIKSIPLRLRQDLS--VEVRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K+ F  +N        + +ANPRNAA+G LR+L+P ++  R LN F + + + S++ 
Sbjct: 174 YLPKDVFYEINRARSKGELQVFANPRNAAAGTLRQLDPREVAKRRLNAFFYHVVEPSKLQ 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E LQ ++ +G  V      A    G+++++ +    +S+L Y +DG V KVD+  
Sbjct: 234 LKSQNEQLQFLKSIGMRVEPNSELAEGTDGVIAFWKKWSESKSSLNYAVDGTVVKVDDLY 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG   ++PRW I+ KF  +QA T+L+ +   +GRTG +TPVA LEPV + G  +  
Sbjct: 294 AQEELGYTTKAPRWAIAFKFPAEQAMTKLIKVTFGVGRTGTITPVAELEPVQLAGTTVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN D+I             +DIR+ D V+V++AGE+IP++V  I  +R    +  + 
Sbjct: 354 ASMHNFDFI-----------SEKDIRLFDIVIVQKAGEIIPQIVRSIPEKRTGKEKRITP 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C   V R+          A +C     C A+   R++ F SRDA +IEGLG++ 
Sbjct: 403 PSRCPVCGGEVGREKEEDV-----ALKCLNP-TCPAKLSRRIQFFCSRDAMDIEGLGEKL 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   +    A  ++ P+D++ L +    S  +     G G+ + +NL ++I K R+  L
Sbjct: 457 VERIVE----AGLVKNPSDLYKLNKDDLLSLGE-----GIGEKTASNLIEAIQKSRSNPL 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + I  LGI  VG++ ++ LA Y+ S +             + D   L  V  +G+ +A+
Sbjct: 508 FKLITGLGIPGVGSKTSKDLANYFGSLRGLV----------SADEKELRNVSGIGEQLAK 557

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  ++ +P     VE LLK V  +I   +   S  ++  K V TGTL    R + QE +
Sbjct: 558 DIKRYFSSPEVKKEVEELLKYV--NIKDEDSPGSKPLKGMKFVVTGTLPGYSRKEIQEKI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            +LG  V++ +S+ TD +++G+NPGSK +KA+ LG+KI++E  F
Sbjct: 616 IKLGGEVASSVSKNTDFLLLGENPGSKEQKARDLGIKIIDERDF 659


>gi|255657267|ref|ZP_05402676.1| DNA ligase [Clostridium difficile QCD-23m63]
          Length = 674

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 229/706 (32%), Positives = 389/706 (55%), Gaps = 52/706 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N+
Sbjct: 4   KDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTNR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E KIDG 
Sbjct: 61  VGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK++
Sbjct: 117 SVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKDN 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    +   +   +
Sbjct: 175 FRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEDYDLESHSD 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++G
Sbjct: 235 SLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLEYEIDGMVIKVNNIKQRDEMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHNE
Sbjct: 295 YTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP+
Sbjct: 355 DYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCPV 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C    +R      G+  AA +C   ++C AQ    + HFVSRDA NI+GLG+  +     
Sbjct: 404 CSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLLN 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                   +I  D+  L   ++    ++E +   G+ S  NL +SI K +   L R I  
Sbjct: 457 E-------KIIQDVSDLYYIKKEDVVELERM---GEKSADNLINSIEKSKENDLWRLING 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI+ +G + A+ LA       NF ++++++++  ++    L  +   G I+A ++VEF+
Sbjct: 507 LGIKFIGVKAAKILA------YNF-KDLDDVMSATSE---QLEELEEFGSIMANSVVEFF 556

Query: 617 QNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +  +N+  +   LK V   + S+    + V    E  K+V TGTL  ++R+ A++ + + 
Sbjct: 557 KEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEKR 615

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 616 GGKATSSVSKSTTFVLAGEEAGSKLAKANDLGIKVIDEERFLELLK 661


>gi|15618073|ref|NP_224357.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae CWL029]
 gi|15835684|ref|NP_300208.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae J138]
 gi|16752895|ref|NP_445166.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae AR39]
 gi|33241485|ref|NP_876426.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae TW-183]
 gi|7674003|sp|Q9Z934|DNLJ_CHLPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4376415|gb|AAD18302.1| DNA Ligase [Chlamydophila pneumoniae CWL029]
 gi|7189537|gb|AAF38439.1| DNA ligase [Chlamydophila pneumoniae AR39]
 gi|8978522|dbj|BAA98359.1| DNA ligase [Chlamydophila pneumoniae J138]
 gi|33235993|gb|AAP98083.1| DNA ligase (NAD+) [Chlamydophila pneumoniae TW-183]
          Length = 662

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 233/706 (33%), Positives = 393/706 (55%), Gaps = 50/706 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E ++    +L +E+  HD  YY   +P I D EYD   R+   I  + P+      P+  
Sbjct: 4   ENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLWSPS-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G   + +   V+H  P LS+   ++ E+L +F +R+    +K    S  +T+E KI
Sbjct: 62  -TRLGDRPSGTFSVVSHKEPMLSIANSYSKEELSEFFSRV----EKSLGTSPRYTVELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + IRYE    V A  RG+G  GED+++ IR I ++P  L  + PE IEVRGEV+ S
Sbjct: 117 DGIAVAIRYEDRVLVQALSRGNGKQGEDITSNIRTIRSLPLRLPEDAPEFIEVRGEVFFS 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
            + F  +N++   + +  +ANPRNAA G L+ L+P ++  R L   ++ L    +     
Sbjct: 177 YSTFQIINEKQQQLEKTIFANPRNAAGGTLKLLSPQEVAKRKLEISIYNLIAPGD--NDS 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ+    GFPV+   R  +T   ++S    +++ R++LP +IDG V KVD  + Q+
Sbjct: 235 HYENLQRCLEWGFPVSGKPRLCSTPEEVISVLKTIETERASLPMEIDGAVIKVDSLASQR 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   +  RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+L++ A+L
Sbjct: 295 VLGATGKHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVAKLTPVLLSGSLVSRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           +NED I             +DIR+GD V V + GEVIPKVV +   +R   ++ ++ P F
Sbjct: 355 YNEDEIH-----------RKDIRIGDTVCVAKGGEVIPKVVRVCREKRPEGSEVWNMPEF 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S VVR+ +  + + V          C A  +E+++ FV R A NI+ LG + +  
Sbjct: 404 CPVCHSHVVREEDRVSVRCVNPE-------CVAGAIEKIRFFVGRGALNIDHLGVKVITK 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+       +   AD+F      Q +T  +  I G  + S  N+ +SI + +++ L+RF
Sbjct: 457 LFE----LGLVHTCADLF------QLTTEDLMQIPGIRERSARNILESIEQAKHVDLDRF 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +LGI  +G  +A  LA ++       + ++ +I+   ++ LSL     +G+ +A AI 
Sbjct: 507 LVALGIPLIGIGVATVLAGHF-------ETLDRVISATFEELLSL---EGIGEKVAHAIA 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           E++ +  ++  ++  ++++   I  + K+ S+    K  V TGTL+ + R  A+  +   
Sbjct: 557 EYFSDSTHLNEIKK-MQDLGVCISPYHKSGSTCF-GKAFVITGTLEGMSRLDAETAIRNC 614

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  V + +S++TD +++G+NPGSKLEKA++LGV I+++E F  L+ 
Sbjct: 615 GGKVGSSVSKQTDYVVMGNNPGSKLEKARKLGVSILDQEAFTNLIH 660


>gi|330984116|gb|EGH82219.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 675

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 244/715 (34%), Positives = 377/715 (52%), Gaps = 49/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SI     EL  L    +Y    Y+   +P I D+EY+AL +   AI  A P     + P
Sbjct: 1   MSINPRAAELRHLIDHANYR---YHVLDEPTITDNEYNALFQELLAIEAADP---TQQTP 54

Query: 72  NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  KIGG + +  L  V H++  LSL+  +   D +KF+  I     +   + + +  
Sbjct: 55  DSPTQKIGGYVAVGGLQPVKHAVRMLSLDNAFEDADFQKFVKAIE---AEMGIDQLEYVC 111

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPK DG  +++ Y  G     A RGDG +GEDV+  +R +  IP  L  + P  +EVRGE
Sbjct: 112 EPKYDGLAVSLIYIDGVLTRGATRGDGETGEDVTHTVRTVKNIPLKLRGDFPAYVEVRGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+ ++ F ALN   I  G K YANPRNAA+G LR+L+ T   +R L F  + L     I
Sbjct: 172 VYMPRDGFEALNQRQIEQGLKTYANPRNAAAGSLRQLDSTVSASRPLEFCAYSLVGAEGI 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K   E +Q ++  G P+  G+     F  +   + E+   R TL YDIDG+V+K+++ 
Sbjct: 232 RPKTHIEAMQIIQGWGVPITPGLEVIKGFEAVKLAWEELLKRRPTLNYDIDGIVFKLNDI 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG   R PRW I+ KF  ++  T L+ +D+QIGRTG  TPVAR++PV +GG +++
Sbjct: 292 ELQEELGFVGRVPRWAIAWKFPAEEVDTVLIQVDVQIGRTGAATPVARVKPVQVGGVVVS 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           N TLHN D +K L           D+  GD V+++RAG+VIP+++  + ++R P A+P +
Sbjct: 352 NVTLHNWDEVKRL-----------DLHEGDTVIIRRAGDVIPQMMMSVADKRIPGAKPIA 400

Query: 430 FPSFCPICQSRVVR--DLNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            P+ CP C S ++   DL  K G  V    A  RC GG+AC AQ+ E + + VSR+  +I
Sbjct: 401 APTHCPRCNSEILNDTDLVKKKGVYVEVTLAYRRCQGGIACDAQREEMIINAVSREVLDI 460

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLGK  +    K+      ++  +D+F L         K+E   G  + SV  L  SI 
Sbjct: 461 DGLGKTTV----KTLCDLGILKDLSDVFAL---TYDDLIKVE---GMAEASVNKLLASIE 510

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +   L RF+ SLGIR  G    + LAK +LS+       + I+  + DD   L+ +  
Sbjct: 511 KSKQTELPRFLRSLGIREAGETTGKVLAKTFLSF-------DQIVNKSFDD---LVALED 560

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            G   A  +V+ +     +  +   +  +  +I   E+  +S +  +  V TGTL  + R
Sbjct: 561 FGPKKAGYLVKAFAPGSPVLEMAQRMLALGVTIAPVEQQDTS-LAGRTYVLTGTLSHMSR 619

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+  +   GA  S  + +KT  +I G + G KL +A  LG+ ++ EE  + L+
Sbjct: 620 GEAKARLEAKGAKTSGSVGKKTTALIAGADGGGKLTEAANLGIPVLYEEDLMKLI 674


>gi|85057601|ref|YP_456517.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123725342|sp|Q2NJF5|DNLJ_AYWBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84789706|gb|ABC65438.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 671

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 240/708 (33%), Positives = 381/708 (53%), Gaps = 66/708 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++ SL ++++  +  YY  S P + D +YDAL +    + + +P       P  P  K
Sbjct: 8   KQKIKSLVKQLNKANYQYYNLSDPDLSDQQYDALIKELINLENHYPQFKL---PYSPTLK 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IGG +      + H  P +SL  ++NIE+L+ F  RI      K   +     E KIDG 
Sbjct: 65  IGGFVEKKFSTIKHKTPMMSLANVFNIEELKAFYDRIV-----KKIPTFSLLTELKIDGV 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I+++Y+KG  V A  RG+G  GEDV+   + I TIP  L LN    +EVRGE+Y+S  D
Sbjct: 120 AISLKYQKGILVRALTRGNGIWGEDVTKNAQTIKTIP--LRLNEDLDLEVRGEIYLSHPD 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN +     +  ++NPRNAASG LR+LN   +  R L+ FV+G+     +    Q E
Sbjct: 178 FEKLNAQRKQENKPLFSNPRNAASGTLRQLNSAVVAKRNLSIFVYGIAD-PYLTKPTQKE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LGF  N      + F  ++S   + KSI+  L YD DG+V K++E      +G
Sbjct: 237 TLVFLTALGFATNPHHYFVSNFENLLSVIEKYKSIKEQLTYDTDGIVIKINELVFHSLIG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++PRW  ++KFA   + + + +I  Q+GRTG++TPV  + PV + G+L++   LHN 
Sbjct: 297 ATAKAPRWATAYKFATITSQSIIQNIIFQVGRTGVITPVCEIMPVMVDGSLVSKVFLHNY 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+ D V+V +AG VIP+++++I ++R    +P      CP 
Sbjct: 357 DYI-----------CKKDIRIKDHVIVHKAGSVIPEILEVIKSKRTDLQKPTLMIEKCPS 405

Query: 437 CQSRVVRD--------LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           C++ + +         LNP                C  Q++++L HFVS++A +I  LG+
Sbjct: 406 CKTILEKQPGGIDYFCLNPN---------------CREQKIQKLIHFVSKNAMDINVLGE 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           Q +  FF        I  P+D++ L+  Q      ++ I GFG   +TN+ D+I   +  
Sbjct: 451 QTIITFFDKN----LITKPSDLYLLKNHQHI----LQEISGFGAKKITNILDAIEASKQK 502

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             E  +F+LGI+H+G ++++ LAKY+ + +N  Q        +  D ++ IR   +G  I
Sbjct: 503 GFEDVLFALGIKHIGKKVSQVLAKYFQTIENLQQ--------STSDTITQIRE--IGIKI 552

Query: 609 AQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKA 666
           AQ+I +++ N  N+  V  L K  VS      +K  +  I  NKK+V TGTLQK  R + 
Sbjct: 553 AQSIQQYFSNSCNLEEVTKLKKLGVSFQSTNSQKPTTQNIFTNKKIVLTGTLQKYSRLQI 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           Q+ + Q+GA+++  LS KT+ +IVG N GSKL KAQ+L + I+ E++ 
Sbjct: 613 QQILEQMGAIITNSLSLKTNYLIVGINAGSKLTKAQKLQIPIIEEKEL 660


>gi|254239878|ref|ZP_04933200.1| DNA ligase [Pseudomonas aeruginosa 2192]
 gi|126193256|gb|EAZ57319.1| DNA ligase [Pseudomonas aeruginosa 2192]
          Length = 794

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 334/623 (53%), Gaps = 50/623 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P ++     PEI+
Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  + NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVFNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQ    P  CP+C S V R    K  K        A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++      D    +  PAD++TL   Q      +  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYEQ------VFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LTAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621
             +P VG  +A  I  F+ +  N
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S       ++ II     DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660
           A+++ +F+  P N+    A+EA L+E     G H ++    +E   L     V TGTL+ 
Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQTWVLTGTLEA 729

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+  L L  +
Sbjct: 730 MSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDE 789

Query: 721 YNTT 724
           +   
Sbjct: 790 HGVA 793


>gi|189219712|ref|YP_001940353.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4]
 gi|254781365|sp|B3DWU2|DNLJ_METI4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189186570|gb|ACD83755.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4]
          Length = 689

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 239/722 (33%), Positives = 391/722 (54%), Gaps = 51/722 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           + K++   +++L  E+ +K    L + I  +D  YY  + P++ D EYD L    + +  
Sbjct: 14  VNKKKAPSLDSLGYEEIKKRHDELVKLIRKYDYAYYVEAHPLVSDQEYDNLYHELETLEK 73

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             P+L     P+ P  +IG E  LS F +VTH IP LSLE  ++ E+L  F+ RI R   
Sbjct: 74  LHPELI---TPDSPTQRIG-ETPLSGFSQVTHEIPMLSLENTYSKEELFAFLERIKRALP 129

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLS 178
            K    I FT+EPKIDG  I+  Y+ G F   A RG+G  G+D++  ++ I ++P R+ +
Sbjct: 130 GK---KISFTVEPKIDGVSISAVYKNGLFSLGATRGNGTVGDDITQNLKTIRSLPLRLET 186

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237
            + PE +EVRGE Y+S  DF  LN +    G+  +ANPRNA +G L++L+P  +  R L 
Sbjct: 187 PDPPEYLEVRGEAYMSPKDFERLNAQREKEGKVLFANPRNATAGSLKQLDPRVVAERPLA 246

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
              +G GK   +  K Q E L  ++ +G P+       +  + +     ++   R+ LPY
Sbjct: 247 VVFYGAGKLVGMKCKTQEEWLNFLKKIGLPIPIVFWVCSNENEVYEAIGKLNECRNQLPY 306

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
             DG   KV+E+     LG  A++PRW  ++K+  ++A TRL ++  Q+GR+G +TPVA 
Sbjct: 307 PTDGAAVKVNEWEYYSLLGYTAKAPRWAFAYKYGAERAKTRLNNVIFQVGRSGTITPVAE 366

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           ++PV + G  ++ ATLHN D +K L           D+++GD V +++AGEVIP+VV + 
Sbjct: 367 MDPVFLSGTTVSRATLHNFDQVKRL-----------DVKIGDVVYLEKAGEVIPEVVGVD 415

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           +N+R    +    P FCP C  ++  +     G  +   RC     C AQ  ER+ HF  
Sbjct: 416 LNQRRGTEKEIVPPEFCPSCGEKLSWE-----GIFL---RCENE-NCPAQLKERILHFAQ 466

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R+A +I+GLG+  +D      D    ++  ADI+ L          + N+   G  S  N
Sbjct: 467 RNAMDIQGLGESLVDQLV---DKGI-VKDVADIYDLDEET------LVNLDRMGKKSAQN 516

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +I + +   L R IF LGI H+G + +  LA+Y+ +           ++H  ++   
Sbjct: 517 LLKAIEESKKKDLSRLIFGLGIPHIGQKASEDLARYFGTMDK--------LSHATEE--E 566

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           L+ +P +G+I+A++IV +++   N   +E L K+    +    +  S  +  K  V TGT
Sbjct: 567 LLNLPFIGEIMARSIVNYFRKEANRRRLEKLRKKGLNFVSTLSQASSGTLSGKTFVITGT 626

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L + +   AQ+ +++ G  VS  LSRKT  ++VG +PGSKL++A++LG+ ++NE++ L +
Sbjct: 627 LSEPRESIAQKIISK-GGRVSNSLSRKTSYLVVGSDPGSKLQEAKKLGIPLINEQELLEM 685

Query: 718 LQ 719
           L 
Sbjct: 686 LH 687


>gi|296390104|ref|ZP_06879579.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAb1]
          Length = 794

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/623 (34%), Positives = 335/623 (53%), Gaps = 50/623 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P ++     P+I+
Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPDIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQ    P  CP+C S V R    K  K        A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++      D    +  PAD++TL   Q      +  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYEQ------VFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621
             +P VG  +A  I  F+ +  N
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S       ++ II     DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660
           A+++ +F+  P N+    A+EA L+E     G H ++    +E   L     V TGTL+ 
Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQTWVLTGTLEA 729

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+  L L  +
Sbjct: 730 MSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVLDEDGLLKLFDE 789

Query: 721 YNTT 724
           +   
Sbjct: 790 HGVA 793


>gi|269303032|gb|ACZ33132.1| DNA ligase, NAD-dependent [Chlamydophila pneumoniae LPCoLN]
          Length = 662

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/706 (33%), Positives = 392/706 (55%), Gaps = 50/706 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E ++    +L +E+  HD  YY   +P I D EYD   R+   I  + P+      P+  
Sbjct: 4   ENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLWSPS-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G   + +   V+H  P LS+   ++ E+L +F +R+    +K    S  +T+E KI
Sbjct: 62  -TRLGDRPSGTFSVVSHKEPMLSIANSYSKEELSEFFSRV----EKSLGTSPRYTVELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + IRYE    V A  RG+G  GED++  IR I ++P  L  + PE IEVRGEV+ S
Sbjct: 117 DGIAVAIRYEDRVLVQALSRGNGKQGEDITLNIRTIRSLPLRLPEDAPEFIEVRGEVFFS 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
            + F  +N++   + +  +ANPRNAA G L+ L+P ++  R L   ++ L    +     
Sbjct: 177 YSTFQTINEKQQQLEKTIFANPRNAAGGTLKLLSPQEVAKRKLEISIYNLIAPGD--NDS 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ+    GFPV+   R  +T   ++S    +++ R++LP +IDG V KVD  + Q+
Sbjct: 235 HYENLQRCLEWGFPVSGKPRLCSTPEEVISVLKTIETERASLPMEIDGAVIKVDSLASQR 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   +  RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+L++ A+L
Sbjct: 295 VLGATGKHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVAKLTPVLLSGSLVSRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           +NED I             +DIR+GD V V + GEVIPKVV +   +R   ++ ++ P F
Sbjct: 355 YNEDEIH-----------RKDIRIGDTVCVAKGGEVIPKVVRVCREKRPEGSEVWNMPEF 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S VVR+ +  + + V          C A  +E+++ FV R A NI+ LG + +  
Sbjct: 404 CPVCHSHVVREEDRVSVRCVNPE-------CVAGAIEKIRFFVGRGALNIDHLGVKVITK 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+       +   AD+F      Q +T  +  I G  + S  N+ +SI + +++ L+RF
Sbjct: 457 LFE----LGLVHTCADLF------QLTTEDLMQIPGIRERSARNILESIEQAKHVDLDRF 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +LGI  +G  +A  LA ++       + ++ +I+   ++ LSL     VG+ +A AI 
Sbjct: 507 LVALGIPLIGIGVATVLAGHF-------ETLDRVISATFEELLSL---EGVGEKVAHAIA 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           E++ +  ++  ++  ++++   I  + K+ S+    K  V TGTL+ + R  A+  +   
Sbjct: 557 EYFSDSTHLNEIKK-MQDLGVCISPYHKSGSTCF-GKAFVITGTLEGMSRLDAETAIRNC 614

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  V + +S++TD +++G+NPGSKLEKA++LGV I+++E F  L+ 
Sbjct: 615 GGKVGSSVSKQTDYLVMGNNPGSKLEKARKLGVSILDQEAFTNLIH 660


>gi|322652148|gb|EFY48510.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
          Length = 571

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/606 (35%), Positives = 346/606 (57%), Gaps = 47/606 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H IP LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +LQ  +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  
Sbjct: 236 PDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++
Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  
Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+G +
Sbjct: 404 FPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +  +
Sbjct: 458 IIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKATT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG ++A
Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGIVVA 557

Query: 610 QAIVEF 615
             +  F
Sbjct: 558 THVFNF 563


>gi|329121050|ref|ZP_08249681.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965]
 gi|327471212|gb|EGF16666.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965]
          Length = 666

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/703 (32%), Positives = 382/703 (54%), Gaps = 48/703 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L +E+ YH   YY   KP I D E+D + R        +P+L   + P     ++G
Sbjct: 9   KVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELITQDSPT---QRVG 65

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+      KV    P LSL   +N ++L +F   +    +  + ++I +  E KIDG  +
Sbjct: 66  GKATGDFKKVEFKKPMLSLSNAFNGKELIEFDRSV---KETLNTDNIEYITELKIDGLSM 122

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + YE+GK +    RGDG  GEDV+A ++ I +IP  +  N P  IE+RGEV++ ++ F+
Sbjct: 123 NLIYEEGKLIRGLTRGDGKVGEDVTANVKTIKSIPLYIE-NAPPYIEIRGEVFMPRSSFV 181

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
           +LN++  A G  P+AN RNAASG +R+L+P    +R L+FF + +G+T  I  K Q  +L
Sbjct: 182 SLNEKRDAAGIMPFANCRNAASGSIRQLDPNVTASRNLDFFAYSVGETEGIEIKNQESLL 241

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             ++   F VN   ++ N+   ++   NE +  R  L YD DG+V KV++F  Q  LG  
Sbjct: 242 NLLKKFHFKVNPNYKKINSIEKVIEIINEWQEKRHHLGYDTDGMVVKVNDFEQQNVLGAT 301

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           ++ P+W I++K+  ++A T + +I + +GRTG+LTP A L+ V I G ++  ATLHN ++
Sbjct: 302 SKDPKWAIAYKYPPEEAETVVENIIVTMGRTGVLTPSADLKSVQIAGTVVKRATLHNMNF 361

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+            +DIR+GD V + ++GE+IP++  ++ N+R    + F  PS CP+C+
Sbjct: 362 IE-----------EKDIRIGDIVKIYKSGEIIPEISVVLKNKRTGKEKKFIMPSECPLCK 410

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            ++ R           A+RC     C     E L HF SRDA NIEGLG   +D      
Sbjct: 411 HKIYRTEGE------VAYRCINP-DCGGVIRENLIHFASRDAMNIEGLGPAVIDGLL--- 460

Query: 499 DPAFS-IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
             A++ I   AD + L++        I  I   G+ S  NL  SI   +N  L +F+F+L
Sbjct: 461 --AYNLIENIADFYELRKDD------IIQIERMGEKSAKNLLTSIENSKNRGLSKFLFAL 512

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G + +  +++ +       ++I+ ++  + D   S+  V  +G+I A+ I ++++
Sbjct: 513 GIRHLGEKGSELISEKF-------KDIDVLMNASVD---SIKSVSGIGNITAEHIYKYFK 562

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           N +N   +E L            K+  +  +   +V TG L  I R +A E +  LG  +
Sbjct: 563 NEKNKKIIERLKNHGILMKLNERKSEGNAFKGHNVVLTGKLSNIGRREAGEIIKALGGNL 622

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +++ T ++IVG+N GSKLEKA++ G+KI+NE  FL ++  
Sbjct: 623 QSTVTKTTTLVIVGENAGSKLEKAREKGIKIINENDFLKIINN 665


>gi|329120426|ref|ZP_08249092.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462110|gb|EGF08438.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 887

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 268/846 (31%), Positives = 408/846 (48%), Gaps = 179/846 (21%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL+ L     Y    YY    P + D+EYD L R  +A+  A P+L   + P+ P  ++
Sbjct: 72  RELTDLLNRYGYE---YYTLDAPSVPDAEYDRLFRELEALEAAHPEL---KLPDSPTQRV 125

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIED---------LRKFITRIYRFWQKKDDNSIFFT 129
           GG       +V H +P LSL   ++ +D         +  F  R+       +     + 
Sbjct: 126 GGAPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMTAFDERVRGGLGGANPQ---YV 182

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188
           +EPK DG  +++ Y  G    AA RGDG SGEDV+  I+ +  IP R+   + P +IE+R
Sbjct: 183 IEPKFDGLAVSLLYRDGVLQQAATRGDGASGEDVTQNIKTVSNIPLRLHGADTPALIEIR 242

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246
           GEV + K DF ALN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + + 
Sbjct: 243 GEVLMLKADFAALNRRQEEAGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQ 301

Query: 247 SEIFA-KGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              FA +   + L+    LGF +  G          ++++Y +M+  R  LPY+IDG+V 
Sbjct: 302 EGGFAAESHIQELEYCGTLGFSLPEGNYGCFGNIAEVLAFYEQMQQKRPALPYEIDGMVV 361

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 362 KVNSLAQQRELGFISRAPRWAIAHKFPAEEALTTVEAIDVQIGRTGAVTPVARLQPVFVG 421

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER--- 421
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +++  R   
Sbjct: 422 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVVLERRPMK 470

Query: 422 -----------------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
                                   P   P+  P  CPIC+S + R+     G+ VA  RC
Sbjct: 471 AATVSNDTNAQNDLFEQRPSEKTQPAYPPYRLPENCPICRSPIERE----EGEAVA--RC 524

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TL 513
           +GG+ CSAQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++      L
Sbjct: 525 SGGMLCSAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLDVPVL 580

Query: 514 QRRQQTSTTKIENIL-GFGDVSVT-----------NLYDSINKRRNISLERFIFSLGIRH 561
           Q+ ++T+  + EN+  G  + S             N+   I   +   L RF+F+LGIRH
Sbjct: 581 QKMKETAE-QSENVSDGLSNTSAAKPKKQPTKWAENIIAGIENSKTPELARFLFALGIRH 639

Query: 562 V--------------------------------GAEIARSLAKYYLSYQNFAQEINNIIA 589
           V                                G  +ARS+A ++      A  I+ ++A
Sbjct: 640 VGERTAKTLAQAFGTLDTVRRAPEPVLACLPDIGEVVARSVAHFFAQDAQQAM-IDELLA 698

Query: 590 HN-----------------NDDWLSLIRVPLVGDIIAQAIVEF----------------- 615
                                 WL+ +    + +  AQA+ E                  
Sbjct: 699 AGVAPKTQPATLPVLRHAEPQRWLARLPDFKISETKAQALWELAGKKTDALLTDQALPAD 758

Query: 616 YQNPRNICAVEALLKEV---------SPSIGRHEKNVSSEIEN--------------KKL 652
           +Q  R++   E LL+             S GR   +  S I +              K  
Sbjct: 759 WQAWRSVPQNETLLRHTIAFLNELDQRSSRGREAAHSESSIADTANLSDGLNEAVAGKTF 818

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  ++R +AQ  +   G  VS  +S+KTD +I G+  GSKLEKA  LGV ++ EE
Sbjct: 819 VLTGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVIAGEAAGSKLEKALALGVAVLGEE 878

Query: 713 QFLFLL 718
           + L +L
Sbjct: 879 ELLAML 884


>gi|325129804|gb|EGC52612.1| DNA ligase, NAD-dependent [Neisseria meningitidis OX99.30304]
          Length = 841

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 267/825 (32%), Positives = 406/825 (49%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D  +  + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           + AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF ALN     
Sbjct: 161 IQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV+  + Q +LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D    
Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                +V R  +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAEAPAANQTQSVPLYKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++T+  T 
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556

Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRH------- 561
              + +     SV               N+   I   +   L RF+F+LGIRH       
Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616

Query: 562 -------------------------VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                    +G  +A S+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQAM-IDELLAAGVAPQT 675

Query: 597 SLIRVPL-----------------VGDIIAQAI-------VEFYQN-------------- 618
             + +P                  + +  AQA+       +E  QN              
Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSE 735

Query: 619 PRNICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           P+N   +E L    +  PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840


>gi|325135742|gb|EGC58354.1| DNA ligase, NAD-dependent [Neisseria meningitidis M0579]
          Length = 841

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 267/825 (32%), Positives = 406/825 (49%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D  +  + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           + AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF ALN     
Sbjct: 161 IQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV+  + Q +LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D    
Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                +V R  +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAEAPAANQTQSVPLYKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++T+  T 
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556

Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRH------- 561
              + +     SV               N+   I   +   L RF+F+LGIRH       
Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616

Query: 562 -------------------------VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                    +G  +A S+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQAM-IDELLAAGVAPQT 675

Query: 597 SLIRVPL-----------------VGDIIAQAI-------VEFYQN-------------- 618
             + +P                  + +  AQA+       +E  QN              
Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSE 735

Query: 619 PRNICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           P+N   +E L    +  PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQALIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840


>gi|260584784|ref|ZP_05852529.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633]
 gi|260157441|gb|EEW92512.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633]
          Length = 668

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 234/724 (32%), Positives = 388/724 (53%), Gaps = 79/724 (10%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SIEQ   ++  L ++++     YY   +P + D EYD        +   +P L  S+ P 
Sbjct: 4   SIEQ---KVQQLREQLNRWSHEYYVQDRPTVTDHEYDETYHELVRLETEYPQLVTSDSPT 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GG +     KVTH  P LSL   ++ EDL+ F  RI    +K  + +I +  E 
Sbjct: 61  ---QRVGGVVLEGFEKVTHQNPMLSLSNAFSKEDLQAFDDRI----KKLTNRTIDYVCEL 113

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  + + Y+ G+ V  A RGDG  GED++  IR + ++P  LSL  P  IEVRGE Y
Sbjct: 114 KIDGLSVALTYQDGQLVLGATRGDGVIGEDITHNIRTVKSVP--LSLEHPWSIEVRGECY 171

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + K  F  LN      G + +ANPRNAA+G LR+L+     +R L  F++       +  
Sbjct: 172 MPKKSFQQLNQLREEEGLEVFANPRNAAAGSLRQLDSKVAASRNLAVFLYQSPSVETLEV 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E+L+KM+ LGF  N      ++   + ++  +M   R+ LPY+IDG+V KV++F  
Sbjct: 232 ASQMELLEKMQALGFVTNQESVLCHSIDEVWAFIEKMTVERNNLPYEIDGIVIKVNDFKA 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+++G   ++P+W I++KF  ++A T + DI+  +GRTG++TP A ++ V + G  +  A
Sbjct: 292 QEEIGFTVKAPKWAIAYKFPAEEAQTIVRDIEWTVGRTGVVTPTAVMDAVFLAGTTVKRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN D I+            RDIR+GD V++ +AG++IP+V  +I+++R    +P+ FP
Sbjct: 352 SLHNVDLIR-----------ERDIRIGDTVVIHKAGDIIPEVTRVILDKRPEGLEPYEFP 400

Query: 432 SFCPICQSRVV--------RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             CP C + +V        R +NPK               C A   E L HFVSRDA N+
Sbjct: 401 KECPSCSNPLVHLEEEVALRCMNPK---------------CPALLKEGLTHFVSRDAMNM 445

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G+G + +   F+S      ++  AD++ L   Q  +  KI+      + S   +  +I 
Sbjct: 446 SGVGTRIIHQLFES----GLVQDVADLYHLTMEQLLTLDKIK------EKSAQKILQAIE 495

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  SLER +  LGIR+VG++ A+ LA ++ + +N  +               L+ +  
Sbjct: 496 TSKQNSLERLLTGLGIRNVGSKAAKDLAMHFETMENLQKATVE----------ELVAIEG 545

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFT 655
           +G +IA +++ ++    N   V+ +L+E+  +      +G+ +  +S +  +  K +V T
Sbjct: 546 LGLVIAHSVLAYF----NQETVQDMLEELKEAGVNMRYLGKAKVAISEDSLLAGKTVVLT 601

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL+++ R +A+E +  LG  V+  +S+KTDI+I G   GSKL KA+ LG+ + +EEQF 
Sbjct: 602 GTLEQMTRQEAKEAIESLGGKVTGSVSKKTDIVIAGAQAGSKLTKAESLGILVWDEEQFR 661

Query: 716 FLLQ 719
            +++
Sbjct: 662 TMIE 665


>gi|75906538|ref|YP_320834.1| NAD-dependent DNA ligase LigA [Anabaena variabilis ATCC 29413]
 gi|123745307|sp|Q3MGE7|DNLJ_ANAVT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|75700263|gb|ABA19939.1| NAD-dependent DNA ligase [Anabaena variabilis ATCC 29413]
          Length = 676

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 239/713 (33%), Positives = 383/713 (53%), Gaps = 62/713 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL  L Q+ SY    YY    P++ D+ YD L R    +    P+L     P+ P  +I
Sbjct: 12  EELRRLLQQASY---AYYVLDAPVMEDAVYDQLYRELQQLEIQHPELV---TPDSPTQRI 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIFFTLEPKIDGT 137
           G         V H+IP  SLE  +N+E+L+ +  R    W+++       +  E KIDG+
Sbjct: 66  GERPATQFLSVRHNIPLYSLENAFNVEELQAWDQR----WRRQVAPTEAEYVAELKIDGS 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII---EVRGEVYIS 194
            I + YE G  V  A RGDG +GED++  +R I +IP  LS +  E I   EVRGE ++ 
Sbjct: 122 AIALTYENGILVRGATRGDGVTGEDITQNVRTIRSIPLRLSFDGIENIGKVEVRGEAFLP 181

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTSEIF 250
              F  +N+E    G + +ANPRNAA+G LR+L+   +  R L+FF + L   G      
Sbjct: 182 LEVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSKIVARRRLDFFAYTLHISGMDDASI 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A  Q+E L+ ++ +GF VN+  +   +   +  YY    + R  LPY  DG+V K++ F 
Sbjct: 242 ANTQWEALELLQKMGFRVNSQHQLCQSLAEVADYYRYWDTERLNLPYMTDGVVLKLNSFK 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG   R PRW ++ K+  ++A TR+ +I + +GRTG LTP+A++ PV + G  ++ 
Sbjct: 302 LQEQLGFTQRFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAQMRPVQLAGTTVSR 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L           DIR+GD V+V++AGE+IP+VV ++   R  D QPF  
Sbjct: 362 ATLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVLKELRPVDTQPFIM 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C   VVR+    TG+ V   RC    +C+A     ++H+VSRDA +I+G+G++ 
Sbjct: 411 PTHCPVCGQPVVRE----TGEAVT--RCVNA-SCAAILKGSIEHWVSRDALDIKGVGEKL 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +      E     +   AD+++L   Q     ++      G+ S   L ++I + +N   
Sbjct: 464 VHQLVDKE----LVHSVADLYSLTNEQLFVLERM------GEKSAQKLIEAIAQSKNQPW 513

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++ LGIRHVG+  A+ L++ Y +    +    + IA           +  +G  IAQ
Sbjct: 514 SRVLYGLGIRHVGSVNAQLLSEKYRAVAELSSAKQSDIAG----------IYGIGAEIAQ 563

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++++   N   +E  L+         E+     N + ++  K  V TGTL  ++R +
Sbjct: 564 SVYQWFRISANQRLIER-LQAAGLQFANTEEISAVDNANLKLVGKTFVITGTLPTLKRDE 622

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + + G  ++  +S+KTD ++VG++ GSKLEKAQ LG+K ++E + L +L
Sbjct: 623 AKALIQKAGGKITESVSKKTDYLVVGEDAGSKLEKAQTLGIKQLSEAELLKIL 675


>gi|291166519|gb|EFE28565.1| DNA ligase, NAD-dependent [Filifactor alocis ATCC 35896]
          Length = 668

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 237/715 (33%), Positives = 390/715 (54%), Gaps = 60/715 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A K++  L + + Y+   YYQ   P I D+EYD++ +   ++    P L  +E P+    
Sbjct: 3   AEKKIKLLRERLEYYSAKYYQEDAPEISDAEYDSMMKELMSLEKEHPSLRSAESPS---E 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+GG  +    +  H +P LSL   ++ E+L +F  +I     ++    I + +E KIDG
Sbjct: 60  KVGGSYSKKFAEYVHRVPLLSLSNAFSYEELLEFDQKI-----RERCGDISYCVELKIDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y+KGKF++ A RG+G  GE+V+  +  I TIP+ L+  +  +  VRGEV++ K+
Sbjct: 115 LSVALEYKKGKFIHGATRGNGQQGENVTDNLNEIVTIPKELNQKVDLV--VRGEVFLPKD 172

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL-------GKTS 247
            FL LN++   +G   +ANPRNAASG LR+L+ ++IT  R L+ F+  +        K  
Sbjct: 173 RFLKLNEQQEDLGLPLFANPRNAASGSLRQLD-SNITKDRNLDIFIFNVQEWMDNSDKEK 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E       + L  +  LGF   +      +   ++ +       R  L +DIDG+V KVD
Sbjct: 232 EQELNSHSKQLNYLDDLGFKTISPREHCESMEKVIEFIKYWTEHREELLFDIDGIVIKVD 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E + ++ LG+ A++PRW I++KF  +Q  T +  I +Q+GRTG+LTP+A L PV I G+ 
Sbjct: 292 ELNKREILGQTAKAPRWAIAYKFPAEQKETTIEAITVQVGRTGVLTPIAELTPVLISGST 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNEDYI             +DIRVGDRV+V++AGE+IP+V  ++ ++R      
Sbjct: 352 VSRATLHNEDYI-----------AMKDIRVGDRVIVQKAGEIIPEVHAVMKDKRDGTEVV 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C +        K    VA  +CT   AC AQ   R+ HFVS+ A +I+  G
Sbjct: 401 FHMPHTCPSCGAAT-----QKIDGEVAV-KCT-NFACPAQLKRRMIHFVSKSAMDIDNFG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +   +++      I+  ADI+ L+ +       +  + GF   S +NL  SIN  ++
Sbjct: 454 PSIVSSLYEN----GLIKNIADIYLLKEKD------LLQLNGFAKKSASNLISSINHSKS 503

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L + + +LGI  VG + A+ L+K + S +   +        N DD   L+R+  +G  
Sbjct: 504 RNLNQLLVALGIDFVGEKAAKVLSKNFSSLEELEK-------ANLDD---LMRIEEIGLK 553

Query: 608 IAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            AQ+I+ ++Q   N   +E L++    + SI   ++N S     KK V TGTL+ ++R +
Sbjct: 554 TAQSILNYFQLEENRAVLERLVEYGVNTKSISGTDQNSSKVFSGKKFVLTGTLEGMKRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +   G  V + +S   D ++ GD+PGSKL+KAQ+L + I+ +++FL ++ +
Sbjct: 614 AKKIIETCGGEVMSAVSTSVDYLLAGDSPGSKLKKAQELNIPILTKDEFLVMVNE 668


>gi|317056400|ref|YP_004104867.1| DNA ligase, NAD-dependent [Ruminococcus albus 7]
 gi|315448669|gb|ADU22233.1| DNA ligase, NAD-dependent [Ruminococcus albus 7]
          Length = 659

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/710 (32%), Positives = 382/710 (53%), Gaps = 60/710 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A+K +  L + ++YH   YY   +  I D EYD L+     +  A PDL R + P   
Sbjct: 5   ESAKKRIDELVEILNYHSRLYYVEDRNEISDYEYDMLQNELKKLEAANPDLIRKDSPT-- 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE      KVTH +   SL+ +++ +++R+F+ R+     ++  +   F +EPKI
Sbjct: 63  -QRVGGEAVSGFEKVTHKVQMGSLQDVFSFDEVREFVDRV-----RESVSDPVFVVEPKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ Y  G+    + RGDG  GE+V+  ++ + +IP  +  ++P +IEVRGEVY+ 
Sbjct: 117 DGLSVSLEYHDGQLTVGSTRGDGFVGENVTENLKTVRSIPVTIDSSLP-MIEVRGEVYMP 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           +N FL+L  E      +P+ NPRNAA+G LR+ +P     R L+ FV  + +        
Sbjct: 176 RNVFLSLIKEQEDNDEQPFKNPRNAAAGSLRQKDPKIAAKRKLDIFVFNVQQVDGKELTA 235

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             + L  ++ LGF      +Q +T   I++  NE+   R  LPYDIDG+V KVD+F  + 
Sbjct: 236 HKQSLDYLKELGFKTVPDYKQVSTSDEIIARINEIGESRFDLPYDIDGVVIKVDDFKHRD 295

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+ P+W +++KF  ++ +T+L+DI++ +GRTG +TPVA  EPV + G  ++ ATL
Sbjct: 296 ILGATAKVPKWAVAYKFPPEEKNTKLIDIELNVGRTGAVTPVAVFEPVFLAGTQVSRATL 355

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D I             ++I +GD + V++AG++IP+V+  +  E++ +   F  P  
Sbjct: 356 HNQDLII-----------EKNINIGDTIRVRKAGDIIPEVLGSV--EKNSEG-AFMLPDE 401

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C +++V+  +       AA RC   + C AQ    + HF S+ A NI+GLG Q +  
Sbjct: 402 CPVCHTKLVKSEDE------AAVRCP-NVECPAQIFRSIVHFASKGAMNIDGLGPQIVRL 454

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              ++     I   AD++ ++     +      +  F + S  NL  +I K R++SL+R 
Sbjct: 455 LLDNK----LITSVADLYNIKEDDLLA------LDSFKEKSAHNLVTAIEKSRSVSLDRL 504

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           IF LGIR++G   A+ L   +    +     A+EI+ I                 G ++A
Sbjct: 505 IFGLGIRNIGQASAKLLCAKFGGLDSIMSATAEEISGIDGF--------------GVVMA 550

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q++   +     I  ++  LKE   +    +         K  V TGTL  ++R+ A+E 
Sbjct: 551 QSVYNAFHEEHMIALIQR-LKECGVNTEYEKVQQDDRFAGKTFVLTGTLPTLKRNDAKEL 609

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + + G   S  +S+KTD ++ G+  GSKL KAQ+LGVKI++EE+F+ +++
Sbjct: 610 IEKFGGKASGSVSKKTDFVLAGEEAGSKLTKAQELGVKIISEEEFMEMIK 659


>gi|257784913|ref|YP_003180130.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
 gi|257473420|gb|ACV51539.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
          Length = 705

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/731 (32%), Positives = 377/731 (51%), Gaps = 65/731 (8%)

Query: 15  EQARK-ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           E AR  EL+ +    +Y    YY    P + D+E+D L      +  A+P+L  +ED   
Sbjct: 8   ETARAAELNRILNHAAY---AYYALDNPELTDAEFDRLLIELQQLEAAYPELI-TEDSY- 62

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GG ++     V H+    S++   N+E+L  +++R          N + +T E K
Sbjct: 63  -TQRVGGYVSEQFEPVQHAARMYSMDDAMNLEELDAWLSRTDEALGASPTNPVAYTCELK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---------NIPEI 184
           IDG  + + Y  G+FV AA RGDG +GE+V+A +  I  +PR L+L          + + 
Sbjct: 122 IDGLGVALTYRDGQFVRAATRGDGSTGENVTANVLTISDVPRELALAGLERVENRGLNQS 181

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG 242
           IEVRGEVY+ K+ F+ LN++  A G++P+ANPRNAA+G LR+ +P  IT  R L  F++ 
Sbjct: 182 IEVRGEVYMPKHSFIRLNEDADAAGKQPFANPRNAAAGSLRQKDPK-ITAHRDLETFIYA 240

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +     +    Q+E L  +R  GF VN   R+      +  +  +    R  L YDIDG+
Sbjct: 241 VADEGPLDVHSQWEFLNWLRSCGFNVNPHARRCLNAQEVHDFCAQALEQRGDLNYDIDGV 300

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD F+ Q+ LG  +R+PRW I+ KF  ++  T L +I IQ+GRTG+LTPVA  +PV 
Sbjct: 301 VVKVDSFASQEALGFTSRAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEFDPVT 360

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ I  ATLHN D I+            +++R GD ++V +AG+VIP+VV  ++N R 
Sbjct: 361 VAGSTIARATLHNLDEIR-----------RKNVREGDTIIVHKAGDVIPEVVGPVLNLRP 409

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            DA  F  P+ CP C S V+++     G++  A RC   + C AQ +ERL H+ SR A +
Sbjct: 410 ADAVEFQMPATCPSCGSPVIQE----EGEV--AFRCV-SIDCPAQAVERLIHWGSRKAMD 462

Query: 483 IEGLGKQQL-------------DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
           I+GLG + +             DF+ K  +   +      ++        S   I     
Sbjct: 463 IDGLGDELINRMVEEGVLSDVADFYDKLTEEMLACMPTGRVYDTDTADHLSGDSIP---- 518

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
            G      +   + + +   L R +F +G+RHVGA +A  LA+ + S Q  A      IA
Sbjct: 519 VGHTIAKKVMAKVEESKTRGLGRVLFGIGMRHVGANVAELLAQEFGSIQALATAPVEKIA 578

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIE 648
                      +P +G  IA+++ EF+  P N+  +E L +  V     + E  +   + 
Sbjct: 579 E----------IPGIGPKIAESVHEFFSIPENVAVIERLRQAGVVLEEEKTENELPQTLA 628

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
               V TGTL+   R +A   +  +GA VS  +S+KT  ++ G+  GSKL KA+ LGV +
Sbjct: 629 GLTFVLTGTLEHFTRDEAGAQLKAMGAKVSGSVSKKTSFVVAGEAAGSKLTKAESLGVPV 688

Query: 709 MNEEQFLFLLQ 719
           ++E     +L+
Sbjct: 689 LDETALQQILE 699


>gi|152984776|ref|YP_001349158.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PA7]
 gi|190359272|sp|A6V7X3|DNLJ_PSEA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150959934|gb|ABR81959.1| DNA ligase, NAD-dependent [Pseudomonas aeruginosa PA7]
          Length = 794

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/623 (34%), Positives = 334/623 (53%), Gaps = 50/623 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+    P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEHPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            ++ EPK+DG  +++ YE G+ V  A RGDG +GED+++ +R I  +P ++     P+I+
Sbjct: 122 EYSCEPKLDGLAVSLLYENGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPDIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++S+  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSRAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 RVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQP   P  CP+C S V R    +  K        A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQPIEVPEHCPVCGSAVERTQLVRRSKGRESLSEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++      D    +  PAD++TL   Q      +  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYDQ------VFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LAAIADSRTPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621
             +P VG  +A  I  F+ +  N
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S       ++ II     DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660
           A+++ +F   P N+    A+EA L+E     G H ++    +E   L     V TGTL+ 
Sbjct: 674 AKSLRDFLDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQTWVLTGTLEA 729

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R  A+E +  LGA V+  +S +T  ++ G   GSKL KA +LG+K+++E+  L LL +
Sbjct: 730 MSRDVAKEKLEGLGAKVAGSVSARTHCVVAGPGAGSKLAKANELGLKVLDEDGLLKLLDE 789

Query: 721 YNTT 724
           Y   
Sbjct: 790 YGVA 793


>gi|239906999|ref|YP_002953740.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1]
 gi|239796865|dbj|BAH75854.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1]
          Length = 704

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/727 (34%), Positives = 372/727 (51%), Gaps = 79/727 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL  L  E  Y    YY    P + D+ YDAL R   A+  A P+LA   DPN P  ++
Sbjct: 14  RELRDLIHEYDYR---YYVLDDPTVEDAAYDALYRELKALEEAHPELA---DPNSPTRRV 67

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF----FTLEPKI 134
           GG +        H     SL+     ++ R F+TR     ++  D   F    F ++PK 
Sbjct: 68  GGAVLEGFASKPHRRRMYSLDNAMAEDEWRDFVTRAANKLER--DGVAFDAPAFWVDPKF 125

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-------SLNIPEIIEV 187
           DG  + I YE G +  A  RGDG  GEDV+  +R +  +P  L        L +P ++EV
Sbjct: 126 DGLALEIIYENGVYAGALTRGDGEVGEDVTENVRTVRNVPLDLRPHAARAGLPVPRLLEV 185

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGEV +++ DF  LN+     G K +ANPRNAA+G +R+L+     TR L FF + +G  
Sbjct: 186 RGEVVMTRQDFYELNERQREQGGKVFANPRNAAAGSVRQLDSRISATRPLTFFTYAVG-- 243

Query: 247 SEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           S+ +  G           ++  ++ LG PV  G  +  T   +  Y+  M   R  LP++
Sbjct: 244 SQDWGDGLAGPGWATHSAVMAGLKALGLPVA-GQGKVVTADEVYPYFEAMGRQRQELPFE 302

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KVD  +LQ+ LG   R+PR+ ++ KF   +A T L  ID+Q+GRTG+LTPVA L
Sbjct: 303 IDGVVVKVDSLALQEALGFTDRAPRFAVALKFPAHEAETVLKHIDVQVGRTGVLTPVAIL 362

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV++ G  +  ATLHNED IK            +D+R GD V+V+RAG+VIP+VV ++ 
Sbjct: 363 EPVSLAGVTVARATLHNEDEIK-----------AKDLRPGDTVVVRRAGDVIPEVVRVVE 411

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R  +A+P+ FP  CP C S  VR      G+  AA RC   LAC A     + +FVS+
Sbjct: 412 DKRPAEAEPYDFPHVCPSCGSDAVR------GEGEAAWRCV-NLACPAMLRRGISYFVSK 464

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
              +IEGLG + +            ++ PAD+F L         ++         +   +
Sbjct: 465 SGLDIEGLGAKWVAALIDKG----MVKSPADLFDLTEADLLPLERMAE-----KSAANFV 515

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
                 +++ SL + I +LGIR VG   AR+LA ++        +++ + A + ++   L
Sbjct: 516 AAVAAAKQSASLVKLIAALGIRQVGTRTARTLAGHF-------HDLDALGAASLEE---L 565

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEAL-------LKEVSPSIGRHEKNVSSEIENKK 651
             +P +G  +A +I EF+ N  N   +E         + E  P        V + +  K+
Sbjct: 566 TALPDIGPEVAGSIREFFANEANRELLERFKGIGLWPVGEAKPET----PAVQTALTGKR 621

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            +FTG L  + R  AQ+ V   G VV   +S+K D ++ G +PGSKL KAQ LG+ I++ 
Sbjct: 622 FLFTGALPDLTREAAQKLVEAAGGVVVGSVSKKLDYLVAGADPGSKLAKAQALGITILSP 681

Query: 712 EQFLFLL 718
           E F  LL
Sbjct: 682 EAFAALL 688


>gi|198274661|ref|ZP_03207193.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135]
 gi|198272108|gb|EDY96377.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135]
          Length = 666

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/704 (33%), Positives = 376/704 (53%), Gaps = 52/704 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++G 
Sbjct: 7   IDQLREELHTHNHNYYILNAPTISDQEFDRLMRELQDLEAKHPE---HYDENSPSVRVGS 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++N    +V H  P LSL   ++  ++R+F  R+    +K  +       E K DGT I+
Sbjct: 64  DLNKEFRQVEHKYPMLSLGNTYSETEVREFYERV----RKALNEDFEICCELKFDGTSIS 119

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           + YE G+ V A  RGDG  G+DV+  ++ I +IP R+     P   E+RGE+ +    F 
Sbjct: 120 LTYEDGRLVQAVTRGDGVRGDDVTDNVKTIRSIPLRLSGEGYPRRFEIRGEILMPWTVFE 179

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN E        +ANPRNAASG L+  N   + +R L+ +++ L    E+   G YE L
Sbjct: 180 ELNREREQREEPLFANPRNAASGTLKSQNSAVVASRKLDAYLYYL-LGEELPHDGHYENL 238

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           Q+    GF V++ +R+A T   +  + N     R  LP   DG+V KV+    Q+ LG  
Sbjct: 239 QEAARWGFKVSSHMRKARTLEEVFDFINYWDLERKNLPVATDGIVLKVNSQRQQRNLGFT 298

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+SPRW I++KF  +QA T+LL +  Q+GRTG +TPVA LEPV + G ++  A+LHN D 
Sbjct: 299 AKSPRWAIAYKFQAEQACTKLLKVTYQVGRTGAVTPVANLEPVQLSGTVVKRASLHNADI 358

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+ L           D+ +GD V V++ GE+IPK+  +  + R   ++  +F + CP C 
Sbjct: 359 IESL-----------DLHLGDMVYVEKGGEIIPKITGVDKDARPEGSEKVTFITHCPECG 407

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           SR+VR  +       AAH CT    C  Q   R++HF+SR A NIEGLG + +D F++  
Sbjct: 408 SRLVRYEDE------AAHYCTNEDGCPTQIKGRIEHFISRRAMNIEGLGPETVDQFYQE- 460

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I   AD++TLQ         I  +   G+ S  N+   + K + +  ER IF+LG
Sbjct: 461 ---GLIHDVADLYTLQ------AADICRLNRMGEKSAENIIQGVEKSKTVPYERVIFALG 511

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IR VG  +A+ +A+ + S       I+++ +   DD   LI V  +G+ IAQ+I+ ++ +
Sbjct: 512 IRFVGETVAKKVARAFRS-------IDDLKSATLDD---LIHVDEIGEKIAQSILRYFHS 561

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            +N+  +E  L+E    +   E+  + +   ++ + +V +G      R + +  + + G 
Sbjct: 562 EKNLQLIER-LREAGVQMAISEEETAGQTDKLQGQSIVISGVFAHHSRDEYKALIEKHGG 620

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
                +S+KT  I+ G+N G SKLEKA++LG++I+NEE+FL ++
Sbjct: 621 KNVGSISKKTSFILAGENMGPSKLEKAEKLGIRIVNEEEFLGMI 664


>gi|218281363|ref|ZP_03487841.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989]
 gi|218217455|gb|EEC90993.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989]
          Length = 667

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 247/708 (34%), Positives = 376/708 (53%), Gaps = 53/708 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S+   +  +  L +E+  +   YY Y  P I D EYD L +   A+   +P++    D 
Sbjct: 1   MSMMDEKARILELRKELEKYSIEYYVYDNPSITDQEYDRLMQELMALEEKYPEMY---DA 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  +I G +     KVTH    LSL  ++N E++ +F+ RI       +     F +E
Sbjct: 58  TSPSQRIIGSVLDGFEKVTHDTQMLSLSNVFNKEEIEEFVQRISESVSNPE-----FVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRG 189
            K DG  + + Y+ G F  A  RGDG  GEDVS  ++ I +IP    ++IPE+  +EVRG
Sbjct: 113 CKYDGLAMALLYDDGNFTRAVTRGDGIVGEDVSNNVKTILSIP----MHIPEMRHVEVRG 168

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           EVY+ K  F  LN      G  P+ANPRNAA+G +R+L+ +   +R L+ + +     S+
Sbjct: 169 EVYMPKASFEQLNKRQEEKGLAPFANPRNAAAGSIRQLDSSICASRKLDAYWYYFQNASD 228

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q E LQ M  + F  N   +   T   I  +  E++  R  LPY+IDG+V K++ 
Sbjct: 229 FAVQTQEEALQAMSKMHFRTNPLRKVCTTVEQIWQFIQEIQEKREDLPYEIDGMVIKLNN 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q++LG  A+ PR+  ++KF  ++  TRL DI I +GRTG +TP A LEPV + G  +
Sbjct: 289 LADQRRLGSTAKVPRYATAYKFPAQEVLTRLKDIVITVGRTGKITPNAVLEPVRVAGTTV 348

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A LHNED I             +D+R+GD V+V++AGE+IP+VV  +   R     P+
Sbjct: 349 SAAQLHNEDMIV-----------NKDLRIGDIVVVRKAGEIIPEVVTSVPERRDGTQVPY 397

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CPIC S +VR  +       AAH C     C A+ +E + HF SRDA NI+ LG 
Sbjct: 398 KFPTTCPICGSHLVRLPDE------AAHYCINQ-DCPARVVESMIHFASRDAMNIDTLGD 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           ++++   +       +    DI+ L R       K     G+   SV  L +SI K +  
Sbjct: 451 KKIEQLHE----WGYLNSIEDIYFLDRYYDELIEK----PGYQKKSVDKLLESIEKSKKQ 502

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L   ++ LGIR VG + A  LA+ +        +I+ ++ H   D L LI    +G I 
Sbjct: 503 PLGVILYGLGIRQVGKKAAMILAEQF-------GDIDTLM-HACVDELVLIHD--IGLIT 552

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQ 667
           A ++V F++  +N+  ++ +LK+   +  + +K  V S   NK  V TGTL+   R++A+
Sbjct: 553 ASSVVAFFKEEKNLHLID-VLKQAGCNFKQEKKQVVESRFTNKTCVLTGTLEHYTRNEAK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
             +  LGA VS  +S+KTD +I G   GSKL KAQ LGV  M+EE+F+
Sbjct: 612 AILESLGANVSGSVSKKTDYVIYGTAAGSKLTKAQSLGVMTMSEEEFV 659


>gi|288801242|ref|ZP_06406697.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331853|gb|EFC70336.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 666

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 237/717 (33%), Positives = 383/717 (53%), Gaps = 60/717 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQ R  +  L +E+  H+  YY  + P I D  +DAL     ++ +A P++    D 
Sbjct: 1   MTTEQER--IIELRKELHQHNYNYYVLNAPQIDDFTFDALLHELQSLENAHPEMY---DA 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++G ++  S  +V H  P LSL   +N +++  F   + +F   ++        E
Sbjct: 56  NSPTQRVGSDLQESFEQVVHVYPMLSLSNTYNKQEVADFYNTVSKFLNGEE---FEICCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            K DG  I++RYE GK V A  RGDG  G+DV+A ++ I TIP VL  N  P + E+RGE
Sbjct: 113 LKYDGLSISLRYEDGKLVRAVTRGDGTRGDDVTANVKTIKTIPLVLQGNDYPAVFEMRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           V +    F  LN+E        +ANPRNAASG L+ LNP  +  R L+ +++ L    +I
Sbjct: 173 VLMPWKVFDKLNEERRQQEEPLFANPRNAASGTLKSLNPVLVAKRSLDAYLYYL-LGEDI 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
              G +E L+  +  G  +  G+R+ ++   I ++ +     R  LP   DG+V KV+  
Sbjct: 232 NIDGHFERLEAAKRWGVKIGEGMRKVSSLEDIYAFIDYWDVERKNLPVATDGIVLKVNSL 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+ +G  A++PRW I++KF  ++  T+L  +  Q+GRTG +TPVA +EPV + G ++ 
Sbjct: 292 KQQQSMGFTAKNPRWAIAYKFKAERELTKLESVSYQVGRTGTITPVANMEPVLLAGTVVK 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATL+NED+IK             D+ +GD V V++ GE+IPK+V + +++R    QP  
Sbjct: 352 RATLNNEDFIKSF-----------DLHIGDYVYVEKGGEIIPKIVGVELSKRTEGMQPIE 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP C +++VR      G+  AA+ C   + C  Q   +++HF++R A NI+ LG +
Sbjct: 401 FIKTCPECGTQLVR----YEGQ--AAYYCPNDMGCPPQIKGKIEHFIARKAMNIDSLGPE 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI--LGFGDVSVTNLYDSINKRRN 547
            +D ++        I+  AD++ L          I++I   G    S   + D+I K + 
Sbjct: 455 TIDSYYNKG----LIKDVADLYCL---------AIDDINEGGAHQKSAKKVIDAIEKSKQ 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +  +R +F+LGIR VG   AR LA+ +          N+I +  N     L+ V  VGDI
Sbjct: 502 VPFDRVLFALGIRFVGETSARLLARKF----------NDINSLRNATAAQLLEVEGVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA ++V F+ + +NI  +E L    L+   P +    K   + +E K +V +G      R
Sbjct: 552 IATSVVTFFSDEKNIALIERLESYGLQMAMPVMDEGPK--GNVLEGKTIVISGIFTHHSR 609

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            + +  + QLG   +  +S KT  ++ GDN G SKL+KA+ LGVKI++E++FL +++
Sbjct: 610 DEYKAMIEQLGGKNTGSISAKTSFVLAGDNMGPSKLQKAESLGVKILSEDEFLEMIK 666


>gi|309777086|ref|ZP_07672052.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915156|gb|EFP60930.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53]
          Length = 665

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 243/700 (34%), Positives = 379/700 (54%), Gaps = 56/700 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  +   ++Y    YY   +P + D EYD   +   A+   +P   +  DPN    ++G
Sbjct: 8   ELRKILDRLAYE---YYVLDQPSMSDQEYDRYYQELVALEEKYP---QYRDPNSITQRVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G +  +  KV H    LSL   +N++DL  F  R+     +            KIDG  +
Sbjct: 62  GVVLDAFTKVEHKRTMLSLGNAFNLDDLHAFDERVREVVPRVRYVVEL-----KIDGLAM 116

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGEVYISKND 197
           ++ Y  G+FV A  RGDG  GEDVS  ++ I +IP    +NIP    +EVRGEVY+    
Sbjct: 117 SLIYRDGRFVQALTRGDGVVGEDVSHNVKTIASIP----MNIPLQGEVEVRGEVYMPNAS 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E    G + +ANPRNAA+G +R+L+ +    R L+ F +      E       E
Sbjct: 173 FDMLNAEREKNGEELFANPRNAAAGSIRQLDSSIAAKRKLDAFWYYFVNAQEYDIHSHEE 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+KM  +   VN   +  ++   + ++  E+   R+TLPY IDG+V KVD+   Q +LG
Sbjct: 233 ALEKMSEMHLRVNPLRKVCDSIAEVWAFIEEITKQRNTLPYAIDGMVIKVDDLDAQNRLG 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + PRW I++KF  ++  T+LLDI + +GRTG +TP A LEPV + G  ++ A LHNE
Sbjct: 293 STVKVPRWAIAYKFPAEEVVTKLLDIVVTVGRTGRITPNAVLEPVRVAGTTVSAAQLHNE 352

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK            +DIR+ D V+V++AG++IP+VV  +V  R+     + FP+ CPI
Sbjct: 353 DMIK-----------EKDIRIQDDVVVRKAGDIIPEVVRPLVERRNDTQAVYHFPTHCPI 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR   P+     AAH C     C A+ +E + HF SRDA +I+ LG ++++FF K
Sbjct: 402 CGSELVR--FPEE----AAHYCINQ-DCPARVVESMIHFASRDAMDIDTLGDKKIEFFHK 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                F +    DI+ L+  +Q    ++ ++ GF + SV  L D+I   +   LE  ++ 
Sbjct: 455 Q---GF-LNTIEDIYCLKEHKQ----ELIDLEGFKEKSVAKLLDAIEDSKKNPLEDLVYG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG + A+ LAK +L+       ++ ++A + ++   L+ +  +G I A++I  F+
Sbjct: 507 LGIRQVGKKAAKVLAKQFLT-------MDALMAASVEE---LVAIKDIGQITAESITAFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             P+N+  + A LK     +    + +  S+   K +V TGTL ++ R+ A+  +  LGA
Sbjct: 557 HEPKNMELI-AHLKGYGLRMDTEAEQIQESQFSGKTVVLTGTLTQMTRNDAKALLESLGA 615

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            VS  +S+KTD++I G+  GSKL KA  LGV  M+E+ F+
Sbjct: 616 NVSGSVSKKTDLVIYGEAAGSKLTKANSLGVMTMDEDTFM 655


>gi|313891779|ref|ZP_07825384.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E]
 gi|313119773|gb|EFR42960.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E]
          Length = 666

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/703 (33%), Positives = 387/703 (55%), Gaps = 48/703 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L +E+ YH   YY   KP I D E+D + R        +P+L     P+ P  ++G
Sbjct: 9   KVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELIT---PDSPTQRVG 65

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+      KV    P LSL   +N ++L +F   +    +  + ++I +  E KIDG  +
Sbjct: 66  GKATGDFKKVEFKKPMLSLSNAFNGKELIEFDKGVK---ETLNTDNIEYITELKIDGLSM 122

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + YE+GK +    RGDG  GEDV+A ++ I +IP  +  N P  IE+RGEV++ ++ F+
Sbjct: 123 NLIYEEGKLIRGLTRGDGKVGEDVTANVKTIKSIPLYIE-NAPPYIEIRGEVFMPRSSFV 181

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
           +LN++  A G  P+AN RNAASG +R+L+P    +R L+FF + +G+T  I  K Q  +L
Sbjct: 182 SLNEKRDAAGIMPFANCRNAASGSIRQLDPNVTASRNLDFFAYSVGETEGIEIKNQESLL 241

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             ++   F VN   ++ N+   ++   NE +  R  L YD DG+V KV++F+ Q  LG  
Sbjct: 242 NLLKKFHFKVNPNYKKINSIEKVIEIINEWQEKRHNLGYDTDGMVVKVNDFAQQNILGAT 301

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           ++ P+W I++K+  ++  T + +I + +GRTG+LTP A L+PV I G ++  ATLHN ++
Sbjct: 302 SKDPKWAIAYKYPPEEEETVVENIIVTMGRTGVLTPSADLKPVQIAGTVVKRATLHNMNF 361

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+            +DIR+GD V + ++GE+IP++  ++ N+R    + F  PS CP+C+
Sbjct: 362 IE-----------EKDIRIGDIVKIYKSGEIIPEISVVLKNKRTGKEKKFIMPSECPLCK 410

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            ++ R      G++  A+RC     C     E L HF SR+A NIEGLG   +D      
Sbjct: 411 HKIYRT----EGEV--AYRCINP-DCGGVIRENLIHFASRNAMNIEGLGPAVIDGLL--- 460

Query: 499 DPAFS-IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
             A++ I   AD + L++        I  I   G+ S  NL  SI   +N  L +F+F+L
Sbjct: 461 --AYNLIENIADFYELRKDD------IIQIERMGEKSAKNLLISIENSKNRGLSKFLFAL 512

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G + +  +++ +       ++I+ ++  + D   S+  V  +G+I A+ I ++++
Sbjct: 513 GIRHLGEKGSELISEKF-------KDIDVLMNASVD---SIKSVSGIGNITAEHIYKYFK 562

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           N +N   +E L            K+  +  +   +V TG L  I R +A E +  LG  +
Sbjct: 563 NEKNKKIIERLKDHGILMKLNERKSEGNAFKGHNVVLTGKLSNIGRREAGEIIKALGGNL 622

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +++ T ++IVG+N GSKLEKA++ G+KI+NE  FL ++  
Sbjct: 623 QSTVTKTTTLVIVGENAGSKLEKAREKGIKIINENDFLKIINN 665


>gi|265753576|ref|ZP_06088931.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA]
 gi|263235290|gb|EEZ20814.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA]
          Length = 665

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 243/706 (34%), Positives = 376/706 (53%), Gaps = 54/706 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++G 
Sbjct: 7   IDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRVGS 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139
           ++N +  +V H  P LSL   ++  ++ +F  R+     KK  N  F    E K DGT I
Sbjct: 64  DINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRV-----KKSLNEDFEICCEMKYDGTSI 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    F
Sbjct: 119 SLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVVF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L     +   G YE 
Sbjct: 179 EELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+GL           D+ +GD V V++ GE+IPK+V +  N R        F ++CP C
Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR      G+  AA+ CT   AC  Q   +++HF+SR A +I+GLG + +D F++ 
Sbjct: 407 GSKLVR----YEGE--AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD++TL+      T+ I N+   G+ S  N+   I + + +  ER +F+L
Sbjct: 461 G----LIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +AK + S    A         + DD   LI V  +G+ IAQ+I+ ++ 
Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA-------SLDD---LIHVDEIGEKIAQSILLYFA 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           NP+N   +E  L+     +   E++ S    ++  K +V +G      R + +E + + G
Sbjct: 561 NPKNRDIIER-LRVAGVRLEADEEDTSGHTDKLAGKSVVISGVFAHHSRDEYKELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                 +S KT  ++ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 620 GKNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|114565926|ref|YP_753080.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318951|sp|Q0AZZ5|DNLJ_SYNWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114336861|gb|ABI67709.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 661

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 243/711 (34%), Positives = 390/711 (54%), Gaps = 72/711 (10%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +E+  HD  YY    P+I DS YD L +    +   +P    ++ P     ++ G
Sbjct: 7   IKELREEMQKHDYHYYILDAPLISDSGYDRLMQELKKLEEEYPQYITADSPT---QRVAG 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           + +     V H  P LSL+  ++ +DL +F  RI R  +     ++ +  E KIDG  I 
Sbjct: 64  KASEKFSPVRHRFPLLSLDNAFSYQDLLEFDRRIGRVAR-----TLSYMAELKIDGVSIA 118

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YE G  + AA RGDG  GEDV+A IR I TIP  L  ++P + EVRGEV++ K +F+ 
Sbjct: 119 LVYENGVLLNAATRGDGLVGEDVTANIRTIKTIPLRLRHSLPRL-EVRGEVFMPKQEFIR 177

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY---- 255
           LN+E    G + +ANPRNAA+G LR+L+P     R L+ FV+ +     I+ +GQ     
Sbjct: 178 LNEEKEEKGERVFANPRNAAAGSLRQLDPRVTAGRALSAFVYDI-----IYMEGQTLAEQ 232

Query: 256 -EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E    M+ LG PVN  VR     + ++++  E    R  LPY+IDG+V K++  + +++
Sbjct: 233 QEAWHFMQELGLPVNPEVRFCADINAVLAFTEEYAEKRHELPYEIDGVVVKLNTLAEREE 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ARSPRW +++KF  ++  TRLL ++I +GRTGI+ P A LEPV + G  ++ A++H
Sbjct: 293 LGATARSPRWAMAYKFPAEEKETRLLGVEINVGRTGIIAPTALLEPVFLAGTTVSRASMH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D IK            +D+R+GD VL+ +AG++IP+++  +  +R  + +  + P  C
Sbjct: 353 NFDLIK-----------EKDLRIGDMVLLHKAGDIIPEIIASLPEKRSGEERVITPPENC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+V R      G++  A+RC   + C A+  E L  F SR A +I+GLG   ++  
Sbjct: 402 PACDSKVAR----FAGEV--AYRCE-NINCPARLKESLIFFASRGAMDIDGLGSAVIEQL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     ++   D++ L+  + T+  ++      G  S  NL  +IN+ ++  L R +
Sbjct: 455 VNKD----MVKRIDDLYRLREEEITALERM------GPKSAANLIKAINESKSRPLSRLL 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL-----SLIRVPLVGDIIA 609
            +LGIRH+GA  A+ L+++                H+ DD+      +L  +P +G  +A
Sbjct: 505 TALGIRHIGARSAKILSRHI---------------HDIDDFYKLGVENLTSIPEIGPKMA 549

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQ 667
           +++V F+  PRN   +E  LK++  +  R E   + E  ++ K  V TGTL  + R +A 
Sbjct: 550 ESMVNFFAEPRNRETIED-LKDLGVNT-REEAIEAGEQLLQGKTFVLTGTLPSLTRQQAS 607

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +   G  VS+ +S+KT  ++ GD+PGSKL+KA QL + I++E  FL LL
Sbjct: 608 EMIESRGGKVSSSVSKKTSYVVAGDDPGSKLDKALQLELTILDEAGFLNLL 658


>gi|255009394|ref|ZP_05281520.1| putative DNA ligase [Bacteroides fragilis 3_1_12]
 gi|313147153|ref|ZP_07809346.1| DNA ligase [Bacteroides fragilis 3_1_12]
 gi|313135920|gb|EFR53280.1| DNA ligase [Bacteroides fragilis 3_1_12]
          Length = 665

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/707 (33%), Positives = 376/707 (53%), Gaps = 52/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  ++  H+  YY  + P I D E+D L R    +    P+    +D N P  +
Sbjct: 4   KEKIDQLRIQLHQHNYNYYVLNAPEISDKEFDDLMRELQTLEQEHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL   N P++ E+RGE+ +   
Sbjct: 117 SISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGNNYPDVFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L     +   G Y
Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    QK L
Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWNVERKNLNVATDGIVLKVNSLKQQKNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNTVSYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+GL           D+ +GD V V++ GE+IPK+  + V  R    +   F + CP
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDVAARFMIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R      G+  AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + +     I   AD++      Q +T  I+N+   GD S  N+   I + + I  ER IF
Sbjct: 459 RLD----LIHNTADLY------QLTTDDIKNLDRMGDKSAENIIRGIMQSKEIPFERVIF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +           +I+   N D  +L+ +  +G+ IAQ+I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSF----------KDIVELENADLETLVSIDEIGEKIAQSILNY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + N  N   ++  LK     + R E+++S    ++  + +V +G      R + ++ + +
Sbjct: 559 FANDSNRKLIDR-LKIAGLQLYRPEEDLSEHTDKLAGQSIVISGVFTHHSRDEYKDLIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 618 HGGKNVGSISAKTSFILAGDNMGPAKLEKANKLGIKIMNEEEFLKLI 664


>gi|119512036|ref|ZP_01631131.1| DNA ligase [Nodularia spumigena CCY9414]
 gi|119463326|gb|EAW44268.1| DNA ligase [Nodularia spumigena CCY9414]
          Length = 678

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 239/713 (33%), Positives = 377/713 (52%), Gaps = 61/713 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL  L Q+ SY    YY    P++ D+ YD L R    +   +P+      P+ P  ++
Sbjct: 12  EELRQLLQQASY---AYYVLDAPMMEDAVYDQLYRELQELEIKYPEFI---TPDSPTQRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +       V H+IP  SLE  +NI++L+ +  R  R  Q     ++ +  E KIDG+ 
Sbjct: 66  GEKPATHFTSVRHNIPLYSLENAFNIDELQIWDQRWRR--QTPKIEAVEYVSELKIDGSA 123

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-----EIIEVRGEVYI 193
           + + YE G  V    RGDG  GED++  +R I +IP  L LN       E IEVRGEV++
Sbjct: 124 LALTYENGILVRGVTRGDGVVGEDITQNVRTIRSIP--LRLNFAGAKSLEKIEVRGEVFL 181

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTSEI 249
               F  +N E    G   +ANPRNAA+G LR+L+P  +  R L+FF + L   G     
Sbjct: 182 PLEVFKQINAERQKAGEHIFANPRNAAAGTLRQLDPRIVAQRRLDFFAYTLHISGMDDAS 241

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A  Q+E L+ +  +GFPVN   +   +   +  YY    + R  LPY  DG+V K++ F
Sbjct: 242 IANTQWEALELLEKMGFPVNPNHKLCRSLTEVAQYYQSWDTKRLNLPYMTDGVVVKLNPF 301

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG   + PRW ++ K+A ++A TR+ +I + +GRTG LTP+A++ PV + G  ++
Sbjct: 302 KLQEQLGFTQKFPRWAVALKYAAEEAPTRVENISVNVGRTGALTPLAQMRPVQLAGTTVS 361

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN D I  L           DIR+GD V+V++AGE+IP+VV ++   R  D  PF 
Sbjct: 362 RATLHNSDRILQL-----------DIRIGDTVIVRKAGEIIPEVVRVLTELRPDDTVPFI 410

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C   VVR+    +G+  A  RC    +C+A     ++H+VSRDA +I+G+G++
Sbjct: 411 MPTHCPVCGQPVVRE----SGE--AVTRCVNA-SCAAILRGEIEHWVSRDALDIKGMGEK 463

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +            +   AD++ L      +T ++  +   G  S   L D+I + +N  
Sbjct: 464 LVHQLVDRH----LVNSVADLYDL------TTERLCALERMGQKSAQKLIDAIAQSKNQP 513

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ LGIRHVG+  A+ L + Y + +  A    + IA           +  +G  IA
Sbjct: 514 WSRVLYGLGIRHVGSVNAQLLTQKYPTVEELATAKQSDIAG----------IYGIGAEIA 563

Query: 610 QAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           Q++ ++++   N   +E L    L+  +        +V+  +  K  V TGTL  + R +
Sbjct: 564 QSVYQWFRIDANHVLIERLKAEGLQLAATEETTTAADVNQNLAGKTFVITGTLPSLSRDE 623

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  + + G  V+  +S+KTD ++VG++ GSKLEKAQ LG+  ++E   L +L
Sbjct: 624 AKALIQKAGGKVTNSVSKKTDYLLVGEDAGSKLEKAQALGITQLSEALLLEML 676


>gi|289581750|ref|YP_003480216.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099]
 gi|289531303|gb|ADD05654.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099]
          Length = 699

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/723 (33%), Positives = 374/723 (51%), Gaps = 54/723 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P E LS ++A +++  L   I  HD  YY  + P+I D  YD L  R   +   F DL+ 
Sbjct: 23  PPEQLSDDEAEQQVEQLRDAIREHDRRYYVENDPLIADRTYDTLFERLQVLESTF-DLSH 81

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P   +GGE   +   V H  P LS+++     D+R+F  R+     +++  ++ 
Sbjct: 82  ---PDSPTRSVGGEPIEAFETVEHEAPMLSIDQSGEEADVREFDERV-----RREVGAVD 133

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  EPK DG  +   YE G    A  RGDG  G+DV+   R I ++P+ L  + P+ + V
Sbjct: 134 YVCEPKFDGVSMEFVYEDGSLQRAVTRGDGREGDDVTRNARTIGSVPQKLHGDYPDFLAV 193

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV++ K+ F   N E I  G +P+ANPRNA +G +R+L+P  +  R L+ F   +   
Sbjct: 194 RGEVFMPKDAFQEHNRERIERGEEPFANPRNATAGTIRQLDPEIVAERPLDVFYFDVLAA 253

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE+      E L++    G  V + V   +     ++Y + M   R  L Y+IDG V KV
Sbjct: 254 SEL-EDSHREELERFPEFGLRVTDHVEIVDDIDDAIAYRDRMLEARDDLNYEIDGTVIKV 312

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   +++LG  AR  R+  ++KF  +   T + D+ +QIGRTG +TPVA LEPV++GG 
Sbjct: 313 DDRDAREELGRTARHDRYAFAYKFPARAEVTPIADVAVQIGRTGRVTPVALLEPVDVGGV 372

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ A+LHN + I             + + +GD V V+RAG+VIP V ++I  E+  D  
Sbjct: 373 TVSRASLHNPEEI-----------AEKTVAIGDTVRVQRAGDVIPYVEEVI--EKGADND 419

Query: 427 P---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           P   +  P  CP+C S + RD     G +     CTGGLAC AQ    ++++ S    ++
Sbjct: 420 PESHYELPDHCPVCDSAIERD-----GPMAF---CTGGLACDAQLRRSIEYYASDGGLDL 471

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++ +         A  +   AD++ L+  + T+      + G+GD S  NL   I 
Sbjct: 472 EGLGEKSVRQLVD----AGLVESIADLYELECEELTA------LEGWGDTSAENLLSEIE 521

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R   L  F+ +LGI HVG   AR LA+ + +++   +          DD  +L  V  
Sbjct: 522 ASREPPLADFLSALGIPHVGPTTARELAREFGTFEAVREAA-------EDDPAALEGVDD 574

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG+ +A+ I EF+ +  N  AV  +L  VSP     E     E++    VFTG+L  + R
Sbjct: 575 VGETVAETIHEFFASEANAAAVADILAHVSPQESDLESG-GDELDGLTFVFTGSLADVTR 633

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +AQE V   GA  +  +S  TD ++VG+NPG +K E A++  V I++E +F  LL +  
Sbjct: 634 SEAQETVEAHGANATGSVSGNTDYLVVGENPGATKREDAEENDVPIIDESEFRELLAERG 693

Query: 723 TTL 725
             L
Sbjct: 694 IGL 696


>gi|150025890|ref|YP_001296716.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86]
 gi|166215404|sp|A6H0N9|DNLJ_FLAPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149772431|emb|CAL43913.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86]
          Length = 666

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/705 (33%), Positives = 373/705 (52%), Gaps = 50/705 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++ SL +E++ H+  YY    P I D ++D       ++    P+     D N P  ++
Sbjct: 5   QKIQSLREELNLHNYNYYVLDNPTISDYDFDVKLTDLQSLEKNNPEYF---DENSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +  +   + H     SL+  ++ EDL  +  RI +      D  + +  E K DG  
Sbjct: 62  GGTITKNFETLKHDYRMYSLDNSYSKEDLLDWENRIQKAL---GDVPLEYICELKYDGAS 118

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I+I YE G+ V A  RGDG  G+DV+  I+ I  +P  L  + PE  ++RGE+ +    F
Sbjct: 119 ISITYENGRLVRAVTRGDGFQGDDVTNNIKTIKAVPIKLKGDFPEKFDIRGEIILPFAGF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N ++I +G  PY+NPRN ASG L+  +  ++  R L+  ++ L   +  F +  +E 
Sbjct: 179 EKMNQDLIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYSLIGNNLPF-QSHFEG 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K R  GF V      A   + +  + N     R TLPY+ DG+V KV++  LQ +LG 
Sbjct: 238 LEKARLWGFKVPKQSHLAKNMNEVFDFINIWDKNRHTLPYETDGVVIKVNDLHLQDELGY 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +Q  T+L  I  Q+GRTG +TPVA LEPV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFKSEQVFTQLNSISYQVGRTGSITPVANLEPVQLAGTIVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+ L           DIR+ D V V++ GE+IPK++ + + +R  ++Q  ++ + CP C
Sbjct: 358 QIEKL-----------DIRINDTVFVEKGGEIIPKIIGVDLQKRPSNSQKTAYITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           Q+++ R    K G+  A H C     C  Q + R++H++SR A +IEGLG + +   + +
Sbjct: 407 QTKLER----KEGE--ANHYCPNFYGCRPQIIGRIQHYISRKAMDIEGLGGETVALLYDN 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  AD++ L      S  +I  +      S  NL   +   +NI  E  +F+L
Sbjct: 461 G----LVKNYADLYDL------SVEQILPLERMAQKSAENLVQGVQNSKNIPFENVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR+VG  +A+ LAK+Y           NI A  N + L L+ V  +GD IAQ++VEF+ 
Sbjct: 511 GIRYVGETVAKKLAKHY----------KNIDAIANANLLELVMVDEIGDKIAQSVVEFFD 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           N  NI  +E  LK     +   E+N   VS+++  K  V +G  +   R + ++ +   G
Sbjct: 561 NQENISVLER-LKNNGIQLAISEENNTVVSNKLLGKIFVVSGVFEIYSRDELKKAIEDNG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             V + +S KT+ +I G N G +KLEKA QL V I++E  F  LL
Sbjct: 620 GKVGSSISAKTNYVIAGQNMGPAKLEKANQLKVSIISESDFSALL 664


>gi|70729275|ref|YP_259012.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf-5]
 gi|123734866|sp|Q4KFH1|DNLJ_PSEF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|68343574|gb|AAY91180.1| DNA ligase, NAD-dependent [Pseudomonas fluorescens Pf-5]
          Length = 788

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/627 (35%), Positives = 336/627 (53%), Gaps = 48/627 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  Y+   +P I D+EYD L R   A+    P+L  S+ P     
Sbjct: 4   AETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALEAEHPELVTSDSPT---Q 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130
           ++G     +  +V H IP LSL   +   D+R+F  R+         +      ++ ++ 
Sbjct: 61  RVGSAALSAFTQVRHEIPMLSLGNAFEEVDMREFDRRVNEGLDLPAGDLFGGGAAVEYSC 120

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           EPK+DG  +++ Y+ G  V  A RGDG +GED+S  +R +  IP ++     P  +EVRG
Sbjct: 121 EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPATLEVRG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV++SK  F  LN   +  G K +ANPRNAA+G LR+L+     +R L F  +GLG+ S 
Sbjct: 181 EVFMSKAGFERLNAAQLEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVSA 240

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A      L++++  G P++  +R A      + YY E+   R+ LPY+IDG+V+KV+ 
Sbjct: 241 DIADTHIGNLERLKQWGMPISRELRLAKGIDECLDYYREIGERRNALPYEIDGVVFKVNS 300

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G  +
Sbjct: 301 IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLQPVKVAGVTV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+P 
Sbjct: 361 SNATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVTERRPENARPV 409

Query: 429 SFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             P  CP+C S V R    K  K        A +RC G LAC AQ  + + HFVSR A +
Sbjct: 410 QIPESCPVCGSHVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMD 469

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG + ++           I  PAD++ L+  Q      I ++ GF +VS   L  +I
Sbjct: 470 IEGLGDKTIEQLVDEN----LIASPADLYRLKYEQ------IIDLEGFAEVSSNKLLKAI 519

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +  +L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +          +P
Sbjct: 520 EDSKRPALARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQVLTY----------LP 569

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALL 629
            VG  +A  I  F+++  N   + +LL
Sbjct: 570 DVGLEVAHEIHSFFEDSHNQEVIGSLL 596



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 18/181 (9%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L   +  L I  VG   A+ LA  + S Q   +           DWL + +   + +
Sbjct: 618 STTLGGMLDKLNIPSVGPGAAQKLADKFGSLQGVIEA----------DWLDMRQA--LPE 665

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSS--EIENKKLVFTGTLQKI 661
             A+A+ EF+ NP N    +A+ +++  + G H   EK V +   +  +  V TG+L+ +
Sbjct: 666 KQAKAVREFFDNPANAQLAQAIEQQLQ-AFGMHWQSEKKVVAGLPLAGQTWVLTGSLELM 724

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG+K+++EE F+  L ++
Sbjct: 725 SRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVAFLTEH 784

Query: 722 N 722
            
Sbjct: 785 G 785


>gi|194333271|ref|YP_002015131.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271]
 gi|254781391|sp|B4S4Y6|DNLJ_PROA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194311089|gb|ACF45484.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271]
          Length = 675

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/719 (32%), Positives = 374/719 (52%), Gaps = 67/719 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A KE++ L  E++ H+  YY  ++P I D  +D    R  A+  AFPDL     P+ P  
Sbjct: 6   ALKEIARLRDELNRHNYRYYVLAQPEISDYAFDQELERLIALEKAFPDLV---TPDSPSQ 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE+      VTH  P  SL   +++E++ +F  R+ +   ++   +  F  E K DG
Sbjct: 63  RVGGEITKEFPTVTHRQPMRSLSNTYSLEEVEEFYARVLKLLPEEAGENPEFVAELKFDG 122

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--------IEVR 188
             +++ Y  G  V  A RG+G  G+D++  IR I ++P  L               IEVR
Sbjct: 123 VAVSLLYRDGFLVQGATRGNGVEGDDITPNIRTIGSVPLQLRGGAAMAAEQYGGREIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGR---KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
           GEV++ K+DF ALN+     GR   + +ANPRNA +G L+  +  ++ R    FV     
Sbjct: 183 GEVFMRKDDFAALNE-----GRPEEEQFANPRNATAGTLKLQDSAEVARRKMMFVAYYLT 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             +  +    + LQ++  +GF          +F  I  +    +  R TL YDIDG+V K
Sbjct: 238 DPQCRSMQHVQRLQRLEEMGFYTGGHYSTCRSFDEIRDFIGRWEVDRLTLQYDIDGIVLK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           ++  +   +LG  ++SPRW I++K+  +QA T L D+  Q+GR G +TPVA LE V + G
Sbjct: 298 LNNPAFWDELGATSKSPRWAIAYKYPAEQAETVLNDVVFQVGRLGTITPVAELEAVRLAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  +TLHN D I+ L           D+R+GDRV+++++GE+IPKV+ ++   R  D+
Sbjct: 358 TTVKRSTLHNFDEIRRL-----------DVRIGDRVVIEKSGEIIPKVIRVVPGTRREDS 406

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
              + PS CP+C + ++   N        +  C    +C AQ   R+ HF SR+A +I+ 
Sbjct: 407 SEIAIPSHCPVCGTALLHPENE------VSWYCPNSQSCPAQVKARILHFASRNAMDIKS 460

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG+  ++    +   A S     D++ L      +  ++ ++    D S  NL  +I K 
Sbjct: 461 LGESLVEQLVHNGLVADS----GDLYRL------TADEVSHLDRMADKSAMNLLKAIEKS 510

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R    ER +++LGIRHVG   AR LA  Y S         +++A    + LS   V  +G
Sbjct: 511 RTREYERVLYALGIRHVGLATARELAAAYHSI--------DLLASAALEELSC--VADIG 560

Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +IAQ++ +F++NP  +  VE L      L   +P     +  V+   E  K++FTGTL+
Sbjct: 561 PVIAQSVHDFFRNPDALALVEKLRTAGLRLAASAP-----KALVNRNFEGMKVIFTGTLE 615

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  R  A   V Q G      LSRKTD+++ G +PGSKL+KA +LGV+++ EE+F  +L
Sbjct: 616 RHSRDDAAALVAQRGGKEVKSLSRKTDLVVAGKDPGSKLQKALKLGVRVIGEEEFEAML 674


>gi|256420112|ref|YP_003120765.1| DNA ligase, NAD-dependent [Chitinophaga pinensis DSM 2588]
 gi|256035020|gb|ACU58564.1| DNA ligase, NAD-dependent [Chitinophaga pinensis DSM 2588]
          Length = 709

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 244/730 (33%), Positives = 391/730 (53%), Gaps = 77/730 (10%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I+     L +L + I Y+D  YY  S P++ D EYD L      +  A PD   ++ P 
Sbjct: 26  TIQDLDSTLENLRRVIIYNDWRYYVQSDPVLSDYEYDQLFAWLKELETANPDKVSADSPT 85

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++   ++ +   V H +P LSLE  +N +DL  +  +        D   I + +EP
Sbjct: 86  ---QRVALGISKNFPTVQHLVPMLSLENSYNADDLNDWDRKAREISGLTD---IEYCIEP 139

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGE 190
           K DG  I++ YE  K    A RGDG SGED++A IR I +IP         I  IE+RGE
Sbjct: 140 KFDGASISLIYENDKLTRGATRGDGVSGEDITANIRQIRSIPLSAHFAAHGIQSIEIRGE 199

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--------YLNFFVHG 242
           V I+KN F A ND+  A    P ANPRNAASG LR ++P ++ +        ++++ V  
Sbjct: 200 VLINKNTFKAYNDQRAADNLPPLANPRNAASGSLRMVDPREVAKRGLEAFLYHMSYHVMD 259

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGF--PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
            GKT     K     LQ +  LGF  P    ++       ++ Y  E +  R  LPY+ID
Sbjct: 260 DGKTEPQEIKTHSNTLQLLASLGFRSPAKE-MKVVKGIQAVIDYVLEFEKERDNLPYEID 318

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KV++++LQ +LG     PRW +++KF  +QA+++L  ++ Q+GRTG +TPVA+++P
Sbjct: 319 GMVIKVNDYALQDKLGMTTHHPRWAMAYKFKARQATSKLRRVEFQVGRTGSVTPVAKIDP 378

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V IGG  + + +L NED +K            +D+++GD VLV+RAG+VIP +V  + + 
Sbjct: 379 VPIGGVTVGSISLFNEDVVK-----------EKDLKIGDTVLVERAGDVIPYIVKSLADL 427

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    +   FP+ CP+C   + +      G+ V   RC   L C AQ +ER+ HFVS+DA
Sbjct: 428 RDGTEEEIKFPTECPVCNEPLFK----PEGESV--WRCI-NLMCEAQVVERMIHFVSKDA 480

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I  LG+  +  F       + + +  DI  + +       ++E + GFG  S+TNL  
Sbjct: 481 MDIRSLGESNVRKF-------YGLGLMKDIPGIYK---IDFAQLEKLEGFGKKSLTNLQS 530

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND--DWLS- 597
           +I + +   L R IF LGIR+VG   A++LA              N + H  D  DW   
Sbjct: 531 AIEQSKTQPLHRLIFGLGIRYVGETTAKTLA--------------NAVNHLLDLKDWTEE 576

Query: 598 -LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENK 650
            L+ +  +G  +A +I +F+    +I  ++ L      ++G + K+  ++      ++ +
Sbjct: 577 QLLALEDIGPKVAGSINQFFHLDDSIHMLQEL-----EALGLNLKSTKADHPGGGNLDGQ 631

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIM 709
             +FTGTL K++R+ A+  V Q G  + + +S K + +IVGD+ GSKLEKA+++  ++I+
Sbjct: 632 TFLFTGTLNKLKRNDAEAMVEQQGGKILSGVSSKLNFLIVGDDAGSKLEKAKKINTIRIL 691

Query: 710 NEEQFLFLLQ 719
           +E++FL L+Q
Sbjct: 692 SEDEFLNLIQ 701


>gi|32476578|ref|NP_869572.1| DNA ligase [Rhodopirellula baltica SH 1]
 gi|81659473|sp|Q7UKD1|DNLJ_RHOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|32447124|emb|CAD76950.1| DNA ligase [Rhodopirellula baltica SH 1]
          Length = 706

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 240/731 (32%), Positives = 386/731 (52%), Gaps = 86/731 (11%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L  EI+ H+  YY  + P I D +YD L      + +  PDL R   P+ P   +GG
Sbjct: 16  VQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENDHPDLRR---PDSPTQLVGG 72

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++   L +V H +P LS++  ++ E+L   + RI +  + +   S+ +T+E KIDG   +
Sbjct: 73  DVVDQLVQVPHRVPMLSIDNTYSREELAAAMERIEKSLEGE---SVAWTMEYKIDGVAGS 129

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR-----------VLSLNIPEIIEVRG 189
           IRYE G+   A  RG+G  G+D++  +R I  +PR           V   N+PE++EVRG
Sbjct: 130 IRYENGELTLALTRGNGQVGDDITHNVRTIRELPRSIADAALAHPEVAGGNVPEVLEVRG 189

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E+Y++  D   LN      G +P+ N RN  +G +R L+P    +R + FF HG G+   
Sbjct: 190 ELYMTDADLADLNVRQTDAGHEPFKNTRNVTAGTIRLLDPKIAASRNIRFFCHGSGELVG 249

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + A      LQ ++ LG P+   V     + +    I     EM      LP++IDG+V+
Sbjct: 250 VRASDHMTFLQHVQALGIPIAPDVVRFENKEDALQAIAKLELEMPD----LPFEIDGIVF 305

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD F  +++LG R++SPRW+I++KF   +A T L  ID+Q+G+TG +TPVA L PV+I 
Sbjct: 306 KVDSFEQREKLGVRSKSPRWVIAYKFERYEAITTLEAIDVQVGKTGTITPVAYLTPVDIA 365

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              ++ A+LHN D I+ L           D+RVGD V+V++AG++IPKVV +   E+H  
Sbjct: 366 DTTVSRASLHNADEIERL-----------DVRVGDTVVVEKAGKIIPKVVRV---EKHAR 411

Query: 425 AQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            +P   F FP+ CP C   + RD   + G  +   RCT   AC AQ  +RL +F SR   
Sbjct: 412 TKPLPKFEFPTHCPQCDEVLTRD---EGGVYI---RCTNP-ACPAQLRQRLVYFGSRTGM 464

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL-----------QRRQQTSTTKIENILGF 530
           +I+GLG++ +D   + E     +   AD++ L           + R+      IE  + F
Sbjct: 465 DIDGLGEEVVDLLLQKE----LVENYADLYRLNVDELAELTWPRLRKGKGDEMIE--VQF 518

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL-AKYYLSYQNFAQEINNIIA 589
           G  +  +L   IN+ R   L R + S+ IRH+G  +A+ + AK++           N+  
Sbjct: 519 GRKNAESLVAGINESRTRGLARVLSSISIRHIGPRVAKLITAKFW-----------NLDL 567

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFY------QNPRNICAVEALLKEVSPSIGRHEKNV 643
             +     L  +  +GD IA+++V+F       Q   ++ AV   + E  P +   ++  
Sbjct: 568 LRSAKAEDLAAIHEIGDRIAESLVKFIHSESGSQTLSDLDAVGVTMSETEP-VATPDEEA 626

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +  +  K +V TGTLQ   R + +  + +LG   ++ +S+KTD +I G+  GSKL KA+ 
Sbjct: 627 NLPLAGKNIVATGTLQHYTRDEIKARIEELGGRAASSVSKKTDFLIAGEKAGSKLTKAES 686

Query: 704 LGVKIMNEEQF 714
           LGV++++E+ F
Sbjct: 687 LGVEVLSEDDF 697


>gi|317489959|ref|ZP_07948451.1| DNA ligase [Eggerthella sp. 1_3_56FAA]
 gi|316910957|gb|EFV32574.1| DNA ligase [Eggerthella sp. 1_3_56FAA]
          Length = 708

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/730 (33%), Positives = 383/730 (52%), Gaps = 63/730 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           EA S   AR  + +L +EI +H   YY    P I D+ +D+L R    +  A P+L    
Sbjct: 16  EATSDPAAR--IDALRREIEHHSYLYYANDAPEISDAAFDSLMRELRELEAAHPELI--- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           DP+ P  ++GG +      V H+    SL+   ++++L  +I R+   + +     +   
Sbjct: 71  DPSSPTQRVGGYVGEQFAPVRHARRMYSLDNAMDLDELDAWIERVTEAFGRM----VPVV 126

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---------SLN 180
            E KIDG+ I + YE G+ + AA RGDG +GEDV+A +R +  +P  L           +
Sbjct: 127 CELKIDGSSIALTYEGGRLMRAATRGDGTTGEDVTANMRTVKDVPLRLREGALGGLRDAD 186

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  +E+RGEVY+ K+ F ALN   +  G++ +ANPRNAA+G LR+ +P+    R L+ F
Sbjct: 187 AP--VELRGEVYMPKSSFDALNAAAVENGKQAFANPRNAAAGSLRQKDPSITANRDLSTF 244

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +     + A+GQ+E+L  +R  GF VN  V    T   + ++     + R  LPY+I
Sbjct: 245 IYAVADERALNAEGQWELLAWLREAGFHVNPDVELCQTREEVHAFCERAVARREDLPYEI 304

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+ F+ Q+ +G  AR+PRW ++ KF  ++ +T L DI +Q+GRTG LTPVA L+
Sbjct: 305 DGVVVKVNSFAQQESMGYTARAPRWAVAFKFPPEEKTTLLRDITVQVGRTGKLTPVAELD 364

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+ +  ATLHNED ++            +D+RVGD V+V++AG+VIP+V+  ++ 
Sbjct: 365 PVVVAGSTVARATLHNEDEVQ-----------RKDVRVGDTVIVRKAGDVIPEVLGPVLA 413

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R  DA+ +  P  CP C S V+R+     G++    RC   + C AQ LERL H+ SR 
Sbjct: 414 LRPADAEAWQMPRTCPSCGSPVIRE----EGEV--DFRCI-SIDCPAQALERLLHWASRG 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT-----STTKIENILGFGDVS 534
           A +I+G+G++ +    +S      +   AD +TL   + +        K    +  G   
Sbjct: 467 AMDIDGMGEEIVSRLVES----GRLSDVADYYTLDEVELSLLDMGRVNKDGEPIRLGSTV 522

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L  +I++ R     R +F LGIRHVG  IA  LA  Y S       I  ++  + +D
Sbjct: 523 AKKLVAAIDESRTRPFARALFGLGIRHVGKTIAELLAAAYPS-------IEALMEASEED 575

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKK 651
              L  +  VG  IA++   F + P N   +E L      ++       + +   +    
Sbjct: 576 ---LAAIDGVGPKIARSAYLFLRTPDNAAVIERLRSHGVALADKAADEGEQLPQTLAGLT 632

Query: 652 LVFTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
            V TG+L    + R +A   +   GA VS  +S+KT  ++ G+  GSK +KA  LGV ++
Sbjct: 633 FVLTGSLVESGMTRDEAGAALKARGAKVSGSVSKKTSFVVAGEAAGSKYDKAVALGVPVL 692

Query: 710 NEEQFLFLLQ 719
           +E   L +L+
Sbjct: 693 DEAALLRILE 702


>gi|256380031|ref|YP_003103691.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
 gi|255924334|gb|ACU39845.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
          Length = 816

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/709 (33%), Positives = 358/709 (50%), Gaps = 42/709 (5%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR    +L +E+  H   YY    P I D E+DAL R   ++  A P LA    P+ P  
Sbjct: 46  ARDRHRALAEEVRGHQFRYYVLDAPTISDGEFDALLRELQSLEDAHPGLAT---PDSPTQ 102

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     V H    LSL+  ++ + LR +  R+     K+  ++  +  E K+DG
Sbjct: 103 QVGGTFSTEFTAVDHLERMLSLDNAFDEDGLRAWFERV----GKEVGDAARYLCELKVDG 158

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVY 192
             I +RYE+G+ V A  RGDG +GEDV+  +R +  +P VL+      +PE++EVRGEVY
Sbjct: 159 LAINLRYERGRLVRALTRGDGRTGEDVTLNLRTLRDVPEVLTGTDEWPVPELVEVRGEVY 218

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
            +  DFL LN +++  G  P+ANPRN A+G LR+ +P    +R L    HG+GK +    
Sbjct: 219 FAVEDFLELNAKLVEAGLPPFANPRNTAAGSLRQKDPKVTASRRLRMVCHGIGKRAGFEL 278

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q +    +R  G P +       TF  + +        R    ++IDGLV KVDE  L
Sbjct: 279 ERQSDAYAALRAWGLPTSEHTAVVATFDEVWARVAHWGEHRHDAAHEIDGLVVKVDEVPL 338

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I+ K+  ++A+T LLDI +Q+GRTG +TP A +EPV + G+ +  A
Sbjct: 339 QRRLGSTSRAPRWAIAFKYPPEEATTTLLDIGVQVGRTGRVTPFAIMEPVKVAGSTVARA 398

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K         R G  + +GDR+++++AG+VIP+V+  +V+ R  DA+ F  P
Sbjct: 399 TLHNASEVK---------RKG--VLIGDRIVIRKAGDVIPEVLGPVVDVRPADAREFVMP 447

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C    +R +  K G +    RC     C AQ  ERL +  SR A ++E LG +  
Sbjct: 448 ASCPEC-GHALRPM--KEGDVDI--RCPNAEGCPAQLRERLAYLASRSALDVEVLGYEGA 502

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                SE         AD+F L            N  G    +   L +++   ++  L 
Sbjct: 503 AALASSE----VYGNEADLFDLTAEDLLRVDLFRNQDGALVTNGAKLLENLEAAKSQPLW 558

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   AR+LA  +   Q         +A              VG  IA A
Sbjct: 559 RVLVALSIRHVGPTAARALAVEFGGVQAILDAEEADLAAAGG----------VGPTIAAA 608

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + E+   P     V          +   +  +  ++E   +V TGTL    R +A++ + 
Sbjct: 609 VREWALTPWRQEVVRRWAAAGVRMVDERDTTIRRDLEGLSIVVTGTLADFSRDEAKDSIL 668

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             G      +S+KT  +IVGDNPGSK +KA QL V +++E  F  LL++
Sbjct: 669 VRGGKAVGSVSKKTAFVIVGDNPGSKADKAAQLKVPVLDEAGFRVLLER 717


>gi|87308785|ref|ZP_01090924.1| DNA ligase [Blastopirellula marina DSM 3645]
 gi|87288496|gb|EAQ80391.1| DNA ligase [Blastopirellula marina DSM 3645]
          Length = 679

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/709 (32%), Positives = 377/709 (53%), Gaps = 51/709 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E+  L  EI  HD  YY  +K  I D EYD L  R   +    P L     P+ P  +
Sbjct: 5   QEEIDHLRAEIRRHDRMYYVEAKTEISDLEYDQLLNRLKHLEAENPQLV---TPDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IG +    L +V H +P LS++  +++E+L+ +  RI +   ++    I + +E KIDG 
Sbjct: 62  IGDQPVEHLNQVAHRVPMLSIDNTYSLEELKAYGERIQKLLPEE---KIEWVVELKIDGV 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196
             ++ YE G+ V    RG+G  G+D++  IR I  IP  L+ + +P ++EVRGE+Y++ +
Sbjct: 119 AASLLYEAGRLVRGVTRGNGQVGDDITHNIRTIKDIPLQLAGDDVPPVLEVRGEIYMTND 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +   +N  + A G   Y N RN  +G +R L+P     R L  F HG+G    + ++   
Sbjct: 179 ELSRINKRLAAAGEALYKNTRNVTAGSIRLLDPRICAERNLRMFTHGVGYAEGLNSESHI 238

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L +++  G      V     F   V++   +      LP+++DGLV KV+ F  +++L
Sbjct: 239 DFLNELKQYGLSPTPKVEAFADFDAAVAHCETLIETLQDLPFEVDGLVLKVNRFEQRERL 298

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   +SPRW+I++KF + +A T+L DI +Q+G+TG +TP+A LEPV + G  ++ ++LHN
Sbjct: 299 GSTTKSPRWIIAYKFEKYEAITKLNDIRVQVGKTGTITPIAELEPVELAGTTVSRSSLHN 358

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            + I+ L           DIR+GD V+V++AG++IP +V + ++ER  +   F FP+ CP
Sbjct: 359 AEQIERL-----------DIRIGDVVVVEKAGKIIPHIVRVEMHERKTELPKFEFPTQCP 407

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           IC + +V+D   + G  +   RC     C AQ  ER+ +F SR+A ++EGLG + +D   
Sbjct: 408 ICHTTLVKD---EGGVYI---RCPNRETCPAQLKERIGYFASRNAMDVEGLGDKLVDQLV 461

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             E     ++   DI+ L      +  ++  +   G  S  NL  SI   ++  L R + 
Sbjct: 462 VDE----LVKSYGDIYRL------TVEELAQLERMGKKSSENLIASIAASKDRGLARLLN 511

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            L IRHVG  +A+ LA+++++           IA  N+          +G IIA ++  F
Sbjct: 512 GLSIRHVGNRVAQLLARHFVTVDALLSASEEEIAAVNE----------IGPIIAASVHHF 561

Query: 616 YQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           + +      +E L      L E  P +   ++     +  K LV TGTL K  R + QE 
Sbjct: 562 FASEFGQQTIEDLRQLGLKLTEDVPDVVASDETGGGPLTGKTLVVTGTLVKYGRDEIQEL 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + G   ++ +S+KTD ++ G+  GSKL KA+QLGVK+++E +F  LL
Sbjct: 622 IEKHGGKATSSVSKKTDYVVAGEKAGSKLAKARQLGVKVLSEAEFEVLL 670


>gi|66045063|ref|YP_234904.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           B728a]
 gi|75502608|sp|Q4ZVF6|DNLJ_PSEU2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|63255770|gb|AAY36866.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. syringae B728a]
          Length = 787

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 338/623 (54%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+             +   + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGGKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P+++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV+  ++ AN     ++YY ++   R TL Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLTLTYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+    P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  +I   R  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +          +P VG  +
Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AYEIRSFFEDEHNRSVIDALLGE 598



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 24/177 (13%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  + +       +  II+    DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQA--LPE 663

Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+ +  N     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDSANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L
Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALL 776


>gi|312888786|ref|ZP_07748349.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603]
 gi|311298661|gb|EFQ75767.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603]
          Length = 675

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/712 (30%), Positives = 389/712 (54%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  +A+ ++ +L  E+  H+  YY  + P I D ++D       A+   FP+ A   +P
Sbjct: 1   MSPTEAKNKIHTLSAELKQHNYNYYVLAMPTISDFDFDKKLEELAALEKQFPEFA---EP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE+      V H  P +SL   ++ ++L+ F  R+    +K   +   +  E
Sbjct: 58  DSPTQQVGGEITKEFETVRHKWPMMSLGNTYSEQELQDFDQRV----RKAIGDDFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
            K DG  +++ YE+GK + A  RGDG  G+DV+A ++ I TIP+ L   N P+  E+RGE
Sbjct: 114 LKFDGLSMSLTYEQGKLIRAVTRGDGIQGDDVTANVKTIHTIPKKLDEGNYPDHFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249
           V++ +  F  LN+E I     PYANPRN ASG ++  +  ++ R  L+ F++ L     +
Sbjct: 174 VFMHRKAFDRLNNERIEQNEMPYANPRNFASGTIKLQDSREVARRPLDCFLYFLYTDKPV 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           F K  ++ +  ++  GF V    +       +  +       R  L YDIDG+V KV+ +
Sbjct: 234 F-KTHWDSIMAVKSWGFHVCEHTKLCKNIDEVFEFIASWNEKRFDLSYDIDGIVLKVNSY 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q++LG  A+SPRW I++K+  +QA T L  +  Q+GRTG +TPVA L+PV + G  + 
Sbjct: 293 AQQQELGFTAKSPRWAIAYKYKAQQAETVLESVSYQVGRTGSVTPVANLKPVVLAGTTVK 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN + I  L           D+  GD V V++ GE+IPK++ +   +R PDA P +
Sbjct: 353 RASLHNANEILRL-----------DLHEGDSVFVEKGGEIIPKIISVNPLKRKPDAAPIA 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           + + CP C + +VR    + G+  A H C     C  Q + +++HF+ R A NI+GLG +
Sbjct: 402 YITHCPECGTELVR----QEGE--ANHYCPNDEGCPPQIVGKMQHFIGRKAMNIDGLGDE 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++  ++     F +R  +DI+ L  R    + +++ +  FG+ S+ N+ + I K + + 
Sbjct: 456 TIETLYQK---GF-LRHISDIYDLHLR----SDELKQLGRFGEKSINNMMEGIEKSKQMP 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            E+ +F +GIR+VG  +AR L  Y+       + I+N++  N ++   L  V  +G  IA
Sbjct: 508 FEKVLFGMGIRYVGETVARKLVAYF-------KNIDNLMKANIEE---LTTVDEIGTRIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQ 667
           +++V+++ +P ++  VE L  +    +   ++ V  S ++  K  + +G  +K  R + +
Sbjct: 558 ESLVDYWSSPEHVQQVEKLKAQGLQFVSNEKELVLASDKLSGKTFIISGVFEKYSRDELK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + + Q G  + + +S K + ++ GDN G +KLEKA +L + I+++++ L +L
Sbjct: 618 DIIEQNGGKILSSISAKLNYLVAGDNMGPAKLEKANKLNIPIISDDELLTML 669


>gi|322437173|ref|YP_004219385.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9]
 gi|321164900|gb|ADW70605.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9]
          Length = 704

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 243/740 (32%), Positives = 377/740 (50%), Gaps = 77/740 (10%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+E+  KEL    +++ +H+  YY    P + D +YD+L  R  A+    P++  S+ P 
Sbjct: 5   SVEEQVKEL---REQLEHHEHLYYVMDTPELTDGQYDSLMNRLKALEAEHPEMVTSDSPT 61

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GG+      KV HS P LSL+  +N EDLR +  R+       +  ++ +T E 
Sbjct: 62  ---QRVGGKPADGFQKVKHSRPMLSLDNAYNEEDLRAWDVRVRGGLPGTE--AVAYTCEL 116

Query: 133 KIDGTMITIRYEKGKFVYAAL-----RGDGHSGEDVSACIRAIPTIPRVLSL------NI 181
           K+DG  + + Y       + L     RGDG +GEDV++ +R I +IP  +S        +
Sbjct: 117 KLDGLSLALHYRGASHDGSQLERGLTRGDGTTGEDVTSNVRTIRSIPLTISAAKLKAAGL 176

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240
           P   EVRGE  +    FL +N+E  A G    ANPRNAA+G +R L P  +  R L+F+ 
Sbjct: 177 PMEFEVRGECVMPHAAFLKMNEEFEAAGLAAKANPRNAAAGTIRTLEPNIVAQRRLDFYA 236

Query: 241 HGL--GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           + L   +  E+    Q E L  +   G  VN  V   ++  G+  +    + +R +L Y+
Sbjct: 237 YFLLQAEGGEMLLGSQSEALTALGKAGMRVNPQVATVDSIDGVWEFIQRCEPLRDSLGYE 296

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KVD+ + Q++LG   ++PRW I++KFA +   T+L  +  Q+GRTG +TPVA+L
Sbjct: 297 IDGIVIKVDKAAQQRRLGFTGKAPRWAIAYKFAARAGVTKLEGVAFQVGRTGKVTPVAQL 356

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV IGG  +  ATLHN D I  L            +R+GD V V+R G+VIPK+  +++
Sbjct: 357 SPVFIGGTTVKRATLHNPDEIVRL-----------GVRIGDFVSVERGGDVIPKITGVVL 405

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            E+    Q   FP  CP C S +V++      + V A       +C A+  E L HF +R
Sbjct: 406 -EKPRGTQEIVFPECCPACGSALVKEEGEVDWRCVNA-------SCPARLREELIHFGAR 457

Query: 479 DAFNIEGLGKQQLDFFF-------------KSEDPA-FSIRIP-----ADIFTLQRRQQT 519
              NIEGLG   +                 K E  A  ++R P     AD++ L + Q  
Sbjct: 458 GVMNIEGLGDAMVGQLLGQVEDAVDETDIEKEEAAAPVTVREPLVRSIADLYRLTKEQLV 517

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
              ++      GD S   L D I K +   L R +  LGIRHVG   A  LA ++ +   
Sbjct: 518 GLERV------GDKSAQALLDEIAKSKKAPLSRVLLGLGIRHVGQRTAELLASHFGA--- 568

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
               I  ++    D+   L++V  +G I+A  + +F+   +N   V+ LL E+   +   
Sbjct: 569 ----IEPLMGATQDE---LVQVNEIGPIVAATVHDFFAQEQNQALVKELL-EIGLEMKAE 620

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           ++  ++ +E    V TGTL  + R  A+E +   G  VS  +S+KTD ++ G++ GSKLE
Sbjct: 621 KRVTTTVLEGLTFVLTGTLPTLTREIAKEKIEAAGGRVSGSVSKKTDYVVAGEDAGSKLE 680

Query: 700 KAQQLGVKIMNEEQFLFLLQ 719
           KA+ LGVK+++E   L LL+
Sbjct: 681 KAESLGVKVVDEAGLLELLE 700


>gi|225075650|ref|ZP_03718849.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
           NRL30031/H210]
 gi|224953072|gb|EEG34281.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
           NRL30031/H210]
          Length = 822

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 261/817 (31%), Positives = 406/817 (49%), Gaps = 170/817 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L     P+ P  ++GGE      +V H IP
Sbjct: 22  YYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQRVGGEPLAGFNEVRHEIP 78

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D       T +Y F ++     +     + +EPK DG  I++ Y  G  
Sbjct: 79  MLSLTNAFSPQDENGVFDHTEMYAFDERVRGGLNGEKPEYVIEPKFDGLAISLLYRDGVL 138

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
             AA RGDG +GEDV+  ++ +  IP R+   NIPE+IE+RGEV + K DF ALN +   
Sbjct: 139 TQAATRGDGTTGEDVTHNVKTVSNIPLRLHGENIPELIEIRGEVLMLKADFAALNKKQAE 198

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 199 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGFIAEEHLQELNYCKEL 257

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + +G      F  I   +++Y +M+  R TLPY+IDG+V KV+  + Q++LG  +R+
Sbjct: 258 GFSLPDG--NFGCFKNIDEVLAFYEQMQQKRPTLPYEIDGMVVKVNSLAQQEKLGFISRA 315

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D +  
Sbjct: 316 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 375

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-------------------- 421
                      +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 376 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETNISVSDGLQDDLFAE 424

Query: 422 -------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
                   P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+++ L H
Sbjct: 425 TPSETRSEPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRVQGLIH 478

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQT---------- 519
           F SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++T          
Sbjct: 479 FASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKASINEEE 534

Query: 520 -STTKIENILG-FGDVSVT------------NLYDSINKRRNISLERFIFSLGIRH---- 561
            S ++IE+  G  G+  +             N+   I   +   L RF+F+LGIRH    
Sbjct: 535 PSNSEIEDFEGETGNTLLAKNNKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGER 594

Query: 562 ----------------------------VGAEIARSLAKYY----------------LSY 577
                                       +G  +ARS+A ++                ++ 
Sbjct: 595 TAKTLAQAFGTLEHVRHAPEPILACLPDIGTVVARSIAHFFAQEAQQAMIDELLAVGIAP 654

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE---------------------FY 616
           Q+ A  I  +       W++ +    + +  A A+ E                     + 
Sbjct: 655 QSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSIEGLQTDKALPADWQTWR 714

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQEYVT 671
             P+N   +E +    + ++ + +    S+     I  K  V TGTL  ++R +AQ  + 
Sbjct: 715 SKPQNAALLENMKTFFAQTLSKLQDETISDGINEAIAGKTFVLTGTLPTLKRDQAQAMIE 774

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
             G  VS  +S+KTD ++ G+  GSKLEKAQ LGV +
Sbjct: 775 AAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQALGVAV 811


>gi|237709923|ref|ZP_04540404.1| DNA ligase [Bacteroides sp. 9_1_42FAA]
 gi|229456016|gb|EEO61737.1| DNA ligase [Bacteroides sp. 9_1_42FAA]
          Length = 665

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 242/706 (34%), Positives = 376/706 (53%), Gaps = 54/706 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++G 
Sbjct: 7   IDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRVGS 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139
           ++N +  +V H  P LSL   ++  ++ +F  R+     KK  N  F    E K DGT I
Sbjct: 64  DINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRV-----KKSLNEDFEICCEMKYDGTSI 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE GK + A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    F
Sbjct: 119 SLTYENGKLLRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVVF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L     +   G YE 
Sbjct: 179 EELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+GL           D+ +GD V V++ GE+IPK+V +  N R        F ++CP C
Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR      G+  AA+ CT   AC  Q   +++HF+SR A +I+GLG + +D F++ 
Sbjct: 407 GSKLVR----YEGE--AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD++TL+      T+ I N+   G+ S  N+   I + + +  ER +F+L
Sbjct: 461 G----LIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +AK + S    A         + DD   LI V  +G+ IAQ+I+ ++ 
Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA-------SLDD---LIHVDEIGEKIAQSILLYFA 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           NP+N   +E  L+     +   E++ S    ++  K +V +G      R + +E + + G
Sbjct: 561 NPKNRDIIER-LRVAGVRLEADEEDTSGHTDKLAGKSIVISGVFAHHSRDEYKELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                 +S KT  ++ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 620 GKNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|312880304|ref|ZP_07740104.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260]
 gi|310783595|gb|EFQ23993.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260]
          Length = 696

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/716 (33%), Positives = 374/716 (52%), Gaps = 53/716 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A   +  L ++I  HD  YY    P++ D  YDAL R   ++  A PDLA   DP+ P
Sbjct: 11  DAAASRIRELTEQIRLHDHRYYVLDDPVLPDDAYDALLRELRSLERAHPDLA---DPDSP 67

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG       KVTH +P  SL+   + E+L  F+ R+ +   +++   +    EPKI
Sbjct: 68  TGRVGGSPKEEFRKVTHPVPLQSLDNALDREELAAFLQRLRQGLGREE---VPVVCEPKI 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+RY  G+FV  A RGDG  GEDV+  +R + ++P  L+L +P  +EVRGEV+++
Sbjct: 125 DGLAVTLRYRDGRFVQGATRGDGRVGEDVTENLRTLRSLPLRLALPVPGELEVRGEVFMA 184

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           + DF  LN      G  P+ANPRNAA+G LR+L+P     R L  F++      +  A+G
Sbjct: 185 RGDFGELNVRREEEGEPPFANPRNAAAGALRQLDPRITAQRRLRLFLY---HVVDPLARG 241

Query: 254 ---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q  +L+ +R +GFP      +  +   I ++ +     R       DG+V K+D+ +
Sbjct: 242 ITTQGALLEWLREVGFPTQGEWARCTSPGEIGTFLDRWDQKRHEHLAQTDGVVVKLDDLA 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   R+PRW I+ K+  ++  TR+ DI+I +GRTG+LTP A LEPV + G ++  
Sbjct: 302 ARETLGSTNRAPRWAIAFKYPPEERPTRVRDIEISVGRTGVLTPTAVLEPVRLSGTVVQR 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D +             +D+R+GDRV V++AGE+IP+VV +    R     PF  
Sbjct: 362 ASLHNPDEV-----------ARKDVRIGDRVFVRKAGEIIPEVVRVDREARDGSESPFVP 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP C S  VR      G++  A RC    +C AQ  E L+HF SR   +I GLG++ 
Sbjct: 411 PSACPACGSEAVR----LEGEV--ALRCP-NRSCPAQLKEGLRHFASRGGLDIRGLGEKL 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+   ++ D    +R  AD+F +      +  ++      G  S  NL +++   ++  L
Sbjct: 464 LE---QAVDVGL-VRDAADLFLVTEDAWAALDRM------GAASARNLKEALEVAKDRPL 513

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + +F+LGIR+VG  +A  LA  + S +         +A           V  VG ++A 
Sbjct: 514 RKLLFALGIRNVGDRLAADLAGRFGSLEALEACSEEALAA----------VEGVGPVVAA 563

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQRHKAQE 668
           A+  F+++  N   +  L +         E+     +     KLVFTG L+   R  AQE
Sbjct: 564 AVRAFFRDGHNRETLRRLREAGVRMEDPQEEKAPGGLPWAGWKLVFTGELESCPREAAQE 623

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
                GA     +SRKT  ++ G   GSKLEKA++LG+ + +E +FL LL++   T
Sbjct: 624 AARARGAQTGESVSRKTTAVVAGARAGSKLEKARKLGIPVWDEARFLELLREAEET 679


>gi|145593768|ref|YP_001158065.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440]
 gi|190359283|sp|A4X487|DNLJ_SALTO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145303105|gb|ABP53687.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440]
          Length = 711

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 237/712 (33%), Positives = 367/712 (51%), Gaps = 51/712 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+  ++L +E++ H   YY    P I D+ +D   R   A+   FP L     P+ P  
Sbjct: 26  ARERHATLSRELTEHQYRYYVLDAPTISDAAFDEQLRELAALEAEFPAL---RTPDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     V H+   +SL+  ++ E+L  +  R+    ++     + +  E K+DG
Sbjct: 83  RVGGAFSTDFTPVAHAERMMSLDNAFSDEELAAWAERV----ERDAGGPVPYLCELKVDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEV 191
             I + YE+G+ V AA RGDG +GEDV+A +R+I  +P  L+ +     IP+++EVRGE+
Sbjct: 139 LAINLTYERGRLVRAATRGDGRTGEDVTANVRSIQDVPGELTPSAEFPEIPDLLEVRGEI 198

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y     F  LN  ++  GR P+ANPRNAA+G LR+ +P    +R L   VHG G      
Sbjct: 199 YFPVAGFADLNAGLVEQGRAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGFGARRGWA 258

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    +R  G P ++  R      G+  Y     + R  + ++IDG+V KVD  +
Sbjct: 259 PSTQSESYAALRTWGLPTSDRWRVVPGLAGVAEYVAHYAAHRHDVEHEIDGVVVKVDPVA 318

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I+ K+  ++ +TRLLDID+ +GRTG +TP A LEPV + G+ +  
Sbjct: 319 IQGRLGSTSRAPRWAIAFKYPPEEVNTRLLDIDVNVGRTGRVTPFAVLEPVRVAGSTVAL 378

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN         + +V R G  + +GD V++++AG+VIP+V+  +V  R P+A+ F  
Sbjct: 379 ATLHN---------AREVERKG--VLIGDTVVIRKAGDVIPEVLGPVVELRPPEARSFVM 427

Query: 431 PSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           PS CP C +     L P K G +    RC    +C AQ  ER+ H   R AF+IE LG +
Sbjct: 428 PSRCPCCGT----PLAPAKEGDIDI--RCPNTRSCPAQLRERVFHLAGRGAFDIEVLGYK 481

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                  +E     I    D+FTL   Q   +    N  G    +   L +++   +   
Sbjct: 482 GAAALLDAE----IITDEGDLFTLDTAQLARSPFFVNKDGSLGSNAVKLLENLTVAKERE 537

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   A++LA+++ S +   Q               L  V  VG  IA
Sbjct: 538 LWRVLVALSIRHVGPTAAQALARHFRSVEAIDQAGEE----------ELSAVDGVGPTIA 587

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666
            ++ E++    +    E + K     +   E+ V+     +E   +V TGTL    R +A
Sbjct: 588 ASVREWFAVAWH---REVVRKWAEAGVRMAEEAVAQGPRPLEGVTVVVTGTLAGYSRDQA 644

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            E +   G  V+  +S+KT  ++VGDNPG+K EKA  L V +++EE F  LL
Sbjct: 645 AEAIQSRGGKVTGSVSKKTAFVVVGDNPGTKAEKAAGLKVPVLDEEGFQVLL 696


>gi|325203753|gb|ADY99206.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240355]
          Length = 841

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 266/825 (32%), Positives = 405/825 (49%), Gaps = 169/825 (20%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D  +  + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV + K DF  LN     
Sbjct: 161 VQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRGEVLMQKADFATLNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQEL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y +M+  R  LPY+IDG+V KV+  + Q +LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D    
Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                +V R  +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++ +  T 
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKEAADKTV 556

Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562
              + +     SV               N+   I   +   L RF+F+LGIRHV      
Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616

Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                     G  +ARS+A ++   +  A  I+ ++A       
Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQA 675

Query: 597 SLIRVPL-----------------VGDIIAQAIVEF-----------------YQNPRNI 622
             + +P                  + +  AQA+ E                  +Q  R+ 
Sbjct: 676 QAVSLPAAQYAEPQRWIARLPGFKISENKAQALWELAGKSIEGLQTDKSLPADWQAWRSE 735

Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
               ALL+ +       PS     +    ++  +  K  V TGTL  ++R +AQ  +   
Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840


>gi|294506892|ref|YP_003570950.1| NAD-dependent DNA ligase [Salinibacter ruber M8]
 gi|294343220|emb|CBH23998.1| NAD-dependent DNA ligase [Salinibacter ruber M8]
          Length = 691

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 225/704 (31%), Positives = 384/704 (54%), Gaps = 51/704 (7%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + +H+  YY    P++ D+EYD L ++   +   +P L   + P+ P +++GG +   L 
Sbjct: 32  LRHHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPGL---QTPDSPTHQVGGPVRDELG 88

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            VTH  P LSL+ ++  +++R F     +   ++   ++ +T EPK DG  + + YE G+
Sbjct: 89  TVTHPAPMLSLKAVYEEDEVRNFAETCRKELGRE---TVTYTAEPKFDGLAVELIYEDGR 145

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            V  A RGDG +GE+++A ++ I  +P   R  +  +P+ + VRGE Y+ K++F A N  
Sbjct: 146 LVQGATRGDGETGEEITANVKTIKGVPLRLRDDARPVPDRLVVRGEAYMRKDEFNAFNRR 205

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
               G+K +ANPRNAA+G LR+L+ ++IT  R L  + + +            E+L+ + 
Sbjct: 206 REEEGKKVFANPRNAAAGSLRQLD-SNITARRPLRIYFYEIAPVDGRDFATHAEVLEALP 264

Query: 263 CLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             G  V  + +R+ +     ++++  +   R  LPY+IDGLV KV++F   + LG R R 
Sbjct: 265 EWGLRVCEDHIRRCDGIDAALAHHAALVDRRDDLPYEIDGLVIKVNDFDGHETLGVRDRD 324

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW  ++KF  ++A+T + D+ +Q+GRTG +TPVA L PV +GG  +T A+LHN++ I  
Sbjct: 325 PRWAAAYKFPPRRATTSIEDLFVQVGRTGRITPVAVLAPVEVGGVEVTRASLHNQNEID- 383

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD VL++RAG+VIP+VV +I +ER     P+  P  CP+C S V
Sbjct: 384 ----------RKDIRIGDTVLIERAGDVIPQVVKVIEDERDGTEAPYHIPDACPVCGSEV 433

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           V   + K         CTGG+ C AQ  ERLKH+ SR+A +IEGLG ++ +        A
Sbjct: 434 VLSDDKKQAF------CTGGMTCPAQFRERLKHYASREATDIEGLGDKRAEQLID----A 483

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I+  +D++ L++        +  +  + D S  NL D I       L+RF+++LGI  
Sbjct: 484 GLIQTISDLYELEK------ADLLQLERYADKSAQNLIDEIEASLEQDLDRFLYALGIPL 537

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG+  AR LA+++          + + A  + D  +L  +  +G  +A +I  F+ +  N
Sbjct: 538 VGSATARLLAQHF----------DTLDALVDADEDALTTIDDIGPEVAHSIATFFADDAN 587

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              ++  +++   ++       ++ +     VFTG+L+   R   Q +V Q GA  ++ +
Sbjct: 588 RGVIDE-MRDAGLTLTNPYAEDAAPLAGLTFVFTGSLEDWTRSAVQRFVEQHGANATSSV 646

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           S  TD ++ G   GSK + A+ LGV +++E+ F  LL++ +  +
Sbjct: 647 SGNTDYVVAGPGAGSKRDDAEALGVPVLDEDDFHALLRERDIEM 690


>gi|212693183|ref|ZP_03301311.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855]
 gi|212664288|gb|EEB24860.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855]
          Length = 665

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 242/706 (34%), Positives = 376/706 (53%), Gaps = 54/706 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++G 
Sbjct: 7   IDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRVGS 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139
           ++N +  +V H  P LSL   ++  ++ +F  R+     KK  N  F    E K DGT I
Sbjct: 64  DINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRV-----KKSLNEDFEICCEMKYDGTSI 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE GK + A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    F
Sbjct: 119 SLTYENGKLLRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVVF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L     +   G YE 
Sbjct: 179 EELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+GL           D+ +GD V V++ GE+IPK+V +  N R        F ++CP C
Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR      G+  AA+ CT   AC  Q   +++HF+SR A +I+GLG + +D F++ 
Sbjct: 407 GSKLVR----YEGE--AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD++TL+      T+ I N+   G+ S  N+   I + + +  ER +F+L
Sbjct: 461 G----LIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +AK + S    A         + DD   LI V  +G+ IAQ+I+ ++ 
Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA-------SLDD---LIHVDEIGEKIAQSILLYFA 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           NP+N   +E  L+     +   E++ S    ++  K +V +G      R + +E + + G
Sbjct: 561 NPKNRDIIER-LRVAGVRLEADEEDTSGHTDKLAGKSVVISGVFAHHSRDEYKELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                 +S KT  ++ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 620 GKNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|67809897|gb|AAY81980.1| NAD-dependent DNA ligase [Wolbachia pipientis]
          Length = 552

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 238/584 (40%), Positives = 346/584 (59%), Gaps = 49/584 (8%)

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           KV H  P LSLE  ++ + + KF+++I RF     ++ I    EPKIDG   +  YE G+
Sbjct: 11  KVEHQEPMLSLENAYDEQGVEKFLSKIKRFLI---EDKIEILCEPKIDGLSFSAIYEDGR 67

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           FV AA RGDG  GEDV+  +  I   P+ L   +   +EVRGE+YIS +DFL LN+    
Sbjct: 68  FVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-GVQGRLEVRGEIYISNSDFLKLNE---- 122

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
                +ANPRNAA+G L++L+     +R L +F + L   +E   K Q E+L K+  LGF
Sbjct: 123 --NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAE---KSQSEVLNKLEALGF 177

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRST-LPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            VN      ++  G++ +Y   KSI S  L YDIDG+VYKV++  LQ +LG   ++PR  
Sbjct: 178 CVNEHQSLTSSLDGMLKFYT--KSILSLYLDYDIDGIVYKVNDLVLQNRLGNTHKAPRSA 235

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK     
Sbjct: 236 LAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIK----- 290

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  +DIR GD V +KRAG+VIP++V++  + R P+   F FP  CP C S+ VR +
Sbjct: 291 ------RKDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSK-VRQV 343

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
             +     AA RC    AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+   D     +
Sbjct: 344 EGE-----AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFY---DLGLIKQ 395

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
           IP DIFTL+ R       +E   G+G  S+ +L ++I  RR I+L+RFIFSLGIR +G  
Sbjct: 396 IP-DIFTLEER--LDEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFSLGIRFIGQV 452

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A  LA YY+SY N+    N++I  ++D+   L+ +  +G  +A+++  F+    NI  +
Sbjct: 453 AAELLADYYVSYDNW---YNSMIELSSDN-TELVGIDGIGKKVAESLESFFSKEHNIKML 508

Query: 626 EALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
             L    ++ P       + +S + NK +VFTG L  + R +A+
Sbjct: 509 NDLTACLQILPV---SSNSSNSVLNNKIIVFTGKLLAMSRGEAK 549


>gi|325955534|ref|YP_004239194.1| DNA ligase [Weeksella virosa DSM 16922]
 gi|323438152|gb|ADX68616.1| DNA ligase [Weeksella virosa DSM 16922]
          Length = 663

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/698 (31%), Positives = 373/698 (53%), Gaps = 48/698 (6%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L +E+  H+  YY   +P I D E+D   +    +    P+ +   DPN P  ++GG +
Sbjct: 9   ALREELHQHNYRYYVLDQPSISDFEFDLKLKELQKLEKEHPEFS---DPNSPTVRVGGSI 65

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
             +   ++H     SL+  ++IE+L+++I R+Y     K+  +  F  E K DG  I+I 
Sbjct: 66  TKNFPTISHEYQMYSLDNSYSIEELKQWIARVY-----KNIENPTFVCELKYDGASISIL 120

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE GK   A  RGDG  G+D++A ++ I ++P +L  + P    +RGE+ I    F  +N
Sbjct: 121 YENGKLTQAVTRGDGTQGDDITANVKTITSLPLILRGSYPTKFYMRGEITIPIKTFDKIN 180

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           ++    G   YANPRN ASG L+  +  ++  R L  F +     +  F + Q+ M++K 
Sbjct: 181 EQRKDEGLLLYANPRNTASGSLKLQDSAEVAKRGLQCFPYAFVGENLGFDE-QWTMIEKA 239

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           + LGF +       +    I++Y  + +S R  LP++IDG+V KV+ F+ Q++LG  ++S
Sbjct: 240 KELGFKIPETASLCSNLEEIIAYITKWESKRHQLPFEIDGIVIKVNSFAQQEELGYTSKS 299

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW +++KF  + A T L  I  Q+GRTG +TPVA L PV + G +I  A+LHNED IK 
Sbjct: 300 PRWAVAYKFKAEAAETTLESITYQVGRTGAITPVANLHPVQLAGTIIRRASLHNEDIIKK 359

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
           L           DIR+GD+V V++ GE+IPK+V +  + R    +   +   CP C +++
Sbjct: 360 L-----------DIRIGDQVYVEKGGEIIPKIVGVNTDVRPAGTEEIRYIENCPSCGTKL 408

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           VR      G+  A H C     C  Q + RL+HFVSR A +IE +G +      +    A
Sbjct: 409 VR------GEGEALHYCLNEDGCPPQIIGRLEHFVSRKAMDIESIGSETAILLHE----A 458

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +   AD +TL +        I  +    + S  N+ D+I   +  S ER ++ LGIRH
Sbjct: 459 GLVNNVADFYTLTKEM------ILPLERMAEKSAQNIIDAIENSKQQSFERLLYGLGIRH 512

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG  +A+ LA ++ + ++  +            +  LI V  +G+ IAQ+I+ ++    +
Sbjct: 513 VGNTVAKKLALHFGTMESLKKAT----------YDELILVEDIGEKIAQSIIAYFDKEEH 562

Query: 622 ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           +  ++ L    +S  +G+ +  +S ++  K  +FTG+L K  R +AQ+ V + G    + 
Sbjct: 563 LELIDRLKTYGLSLELGKEQTPISDKLTGKTFLFTGSLTKFTRAEAQKLVEEHGGKNLSA 622

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S+  D +I G+  GSKL+KA++L + ++ E +FL L+
Sbjct: 623 VSKNLDYLIAGEKAGSKLKKAEELKITVLTEGEFLELI 660


>gi|146301217|ref|YP_001195808.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101]
 gi|190359257|sp|A5FE87|DNLJ_FLAJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146155635|gb|ABQ06489.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101]
          Length = 668

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 226/710 (31%), Positives = 376/710 (52%), Gaps = 54/710 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L +E++ H+  YY      I D ++D   +    + +  P+     D + P  +
Sbjct: 4   QETIQTLREELNQHNYNYYVLDNATISDYDFDIKLKELQDLENKHPEFF---DEDSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +   + H     SL+  ++ EDL  +  RI R      + ++ +T E K DG 
Sbjct: 61  VGGTVTKNFKTIAHQYRMYSLDNSYSKEDLIDWENRIQRVL---GNVNLQYTCELKYDGA 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I+I Y+ GK V A  RGDG  G++V+  I+ I +IP  L  + PE  ++RGE+ +    
Sbjct: 118 SISISYQNGKLVQALTRGDGFQGDEVTNNIKTIKSIPLKLKGDYPERFDIRGEIILPFAG 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E+I +G  PY+NPRN ASG L+  +  ++  R L   ++ +   +  F K Q+E
Sbjct: 178 FEKMNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLECLLYTVAGNNLPF-KTQFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+  R  GF V N  +  N+   +  + +     R  LPY+ DG+V KV+    Q++LG
Sbjct: 237 GLESARKWGFKVPNEAKLVNSMQEVFDFIDYWDVHRHKLPYETDGVVIKVNSIHSQEELG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  +QAST+L  I  Q+GRTG +TPVA LEPV + G ++  A+LHN 
Sbjct: 297 YTAKSPRWAIAYKFKSEQASTKLKSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+ D V V++ GE+IPK++ + + +R  +++   + + CP 
Sbjct: 357 DQIEKL-----------DIRINDTVFVEKGGEIIPKIIAVDLEKRPENSEVTQYITHCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C++ +VR+         A H C     C  Q + R++H++SR A +IEGLG + +   FK
Sbjct: 406 CETELVRNAGE------ANHYCPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFK 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERF 553
           +      +   AD++ L         K+E+IL        S  NL + + K + I  E  
Sbjct: 460 NG----LVHNYADLYEL---------KVEDILHLERMAQKSAENLVNGVEKSKEIPFESV 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG  +A+ LAK+Y           NI A +    + LI V  +G+ IA++++
Sbjct: 507 LFALGIRFVGETVAKKLAKHY----------KNIDALSQASLMDLILVDEIGERIARSVI 556

Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           EF++N  N   +E L K      ++ R   N + +   K  V +G   +  R + ++ + 
Sbjct: 557 EFFENEENKIIIERLKKYGIQFETVERVNPNATEKFIGKTFVVSGVFSQFSRDELKKAIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
             G  V + +S KTD ++ GDN G +KLEKA +L + I++E++F+  L +
Sbjct: 617 DNGGKVGSSISAKTDFVVAGDNMGPAKLEKATKLNIPILSEDEFITKLNE 666


>gi|257053690|ref|YP_003131523.1| NAD-dependent DNA ligase LigA [Halorhabdus utahensis DSM 12940]
 gi|256692453|gb|ACV12790.1| DNA ligase, NAD-dependent [Halorhabdus utahensis DSM 12940]
          Length = 693

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 249/715 (34%), Positives = 377/715 (52%), Gaps = 55/715 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++AL  E A ++   L + I YHD  YY  + P+I D  YDAL  R   +   F  L R 
Sbjct: 22  VDALDAESAHEQAEQLREAIRYHDHQYYVENDPVIGDRTYDALFARLQDLEDGF-GLDRE 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSI 126
              N P  ++GGE    L  V H  P  S+++   + ++R+F  R+ R       D +  
Sbjct: 81  ---NSPTQRVGGEPLDKLASVEHVAPMQSIDQGGEVTEVREFDERVARGMGDAGFDPDER 137

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +  EPK DG  + I YE G +  AA RGDG  GEDV+  +R IP++P  L  + P+ + 
Sbjct: 138 TYFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRTIPSVPGRLRGDYPDTLA 197

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244
           VRGEVYI  + F A N E I  G  P+ANPRNAA+G LR+L+P+ IT  R L  F  G+ 
Sbjct: 198 VRGEVYIPTDAFQAYNRERIERGDDPFANPRNAAAGTLRQLDPS-ITAERPLAIFFFGVL 256

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             S  F +   E+ +++   G  V +   + ++    + Y + +   R  LP++IDG+V 
Sbjct: 257 DASVEFEQNS-EVYERLPEWGLRVTDLAEEVDSIEDAIDYRDRLLDERDDLPFEIDGVVI 315

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+++ +    LG  AR+PRW  ++KF  +   T + D+ +Q+GRTG LTPVA ++PV +G
Sbjct: 316 KLNDRAACDALGSTARAPRWAFAYKFPARTERTTIRDVVVQVGRTGRLTPVALMDPVEVG 375

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++ A+LHN   I+ L            + VGD V V+RAG+VIP+V +++  +   D
Sbjct: 376 GVMVSRASLHNPAEIERL-----------GVDVGDEVRVQRAGDVIPEVAEVL--DAASD 422

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              F FP  CP+C S V RD     G L     CTGGLAC AQ    + H+ SR   +IE
Sbjct: 423 GT-FDFPESCPVCDSPVERD-----GPLAF---CTGGLACPAQLERAIVHYASRAGLDIE 473

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++++         A  +   AD++ L +   TS      + G+G  SV NL + +  
Sbjct: 474 GLGEERVQQLLD----AGLVEELADLYELGQLDLTS------LEGWGMQSVANLQEELEA 523

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R   L+ F+ +L +  +GA  A +LA+ + +++          A  + D   L  V  +
Sbjct: 524 SREPPLDDFLAALNVPSLGAATATALAREFGTFE----------AVMDADREQLQAVDDI 573

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G  +A  I EF++  RN  A+E LL  V P    +E     E++    VFTGTL    R 
Sbjct: 574 GPKVAAEIREFFETERNREAIERLLDHVDPQP--YEVEGGDELDGLTFVFTGTLSNYTRS 631

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLL 718
           +AQE V   G   ++ +S  TD ++VG+NPG  K + A    V+I++E++F  LL
Sbjct: 632 EAQELVEVHGGSATSSVSGNTDYLVVGENPGQRKRDDADANDVQILDEDEFEELL 686


>gi|159036755|ref|YP_001536008.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205]
 gi|190359280|sp|A8M5E3|DNLJ_SALAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157915590|gb|ABV97017.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205]
          Length = 710

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 237/712 (33%), Positives = 365/712 (51%), Gaps = 51/712 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+  ++L  E++ H   YY    P I D+E+D   R   A+   FP L     P+ P  
Sbjct: 25  ARERHATLSLELTEHQYRYYVLDAPTISDAEFDERLRELAALEAEFPAL---RTPDSPTQ 81

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     V H+   +SL+  +  E+L  +  R+    ++     + +  E K+DG
Sbjct: 82  RVGGAFSTDFTPVAHAERMMSLDNAFTDEELDAWAERV----ERDAGGPVPYLCELKVDG 137

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEV 191
             I + YE+G+ V AA RGDG +GEDV+A +R+I  +P  L+ +     IP ++EVRGE+
Sbjct: 138 LAINLTYERGRLVRAATRGDGRTGEDVTANVRSIRDVPAELAPSAEFPEIPGLLEVRGEI 197

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G      
Sbjct: 198 YFPIAGFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARQGWQ 257

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    +R  G P ++  R      G+  Y     + R  + ++IDG+V KVD  S
Sbjct: 258 PSTQSESYAALRAWGLPTSDRWRVVPDLAGVAEYIAHYATHRHDVEHEIDGVVVKVDPVS 317

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I+ K+  ++ +TRLLDID+ +GRTG +TP A LEPV + G+ +  
Sbjct: 318 IQGRLGSTSRAPRWAIAFKYPPEEVNTRLLDIDVNVGRTGRVTPFAVLEPVRVAGSTVAL 377

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN         + +V R G  + +GD V++++AG+VIP+V+  +V  R PDA+ F  
Sbjct: 378 ATLHN---------AREVRRKG--VLIGDTVVIRKAGDVIPEVLGPVVELRPPDARSFVM 426

Query: 431 PSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           PS CP C +     L P K G +    RC    +C AQ  ER+ H   R AF+IE LG +
Sbjct: 427 PSTCPCCGT----PLAPAKEGDVDI--RCPNTRSCPAQLRERVFHLAGRGAFDIEVLGYK 480

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                  ++     I    D+F L   Q T +    N  G    +   L D++   +   
Sbjct: 481 GAAALLDAQ----IITDEGDLFALDAAQLTRSPFFVNKDGSLGSNAVKLLDNLTVAKERE 536

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   A++LA+++ S +   Q               L  V  VG  IA
Sbjct: 537 LWRVLVALSIRHVGPTAAQALARHFRSIEAIDQAGEE----------ELSAVDGVGPTIA 586

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666
            ++ E++    +    E + K     +   E+ V      +E   +V TGTL    R +A
Sbjct: 587 ASVREWFAVAWH---REVVRKWAEAGVRMTEEAVDEGPRPLEGMTVVVTGTLAGFSRDQA 643

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            E +   G  V+  +S+KT  ++VG+NPG+K +KA  L V +++EE F  LL
Sbjct: 644 AEAIQSRGGKVTGSVSKKTAFVVVGENPGTKADKAASLKVPVLDEEGFRVLL 695


>gi|329954852|ref|ZP_08295869.1| DNA ligase [Bacteroides clarus YIT 12056]
 gi|328526956|gb|EGF53967.1| DNA ligase [Bacteroides clarus YIT 12056]
          Length = 665

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 236/708 (33%), Positives = 376/708 (53%), Gaps = 54/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  ++  H+  YY  + P I D E+D   R    +    P+    +D N P  +
Sbjct: 4   KEKIDQLRADLHRHNYNYYVLNTPEISDKEFDDRMRELQELEKEHPEY---QDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136
           +G ++N +  +V H  P LSL   ++  ++  F  R+     KK  N  F    E K DG
Sbjct: 61  VGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYDRV-----KKALNEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP +L  N P + E+RGE+ +   
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLILHGNYPALFEIRGEILMPWE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L    E+   G Y
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ     GF ++   ++A++   +  Y     + R  LP   DG+V KV+    QK L
Sbjct: 235 ENLQAAAGWGFKISEHTKKAHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R      G+  AAH C    +C  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIR----YEGE--AAHYCPNETSCPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++      Q +T  I+N+   G+ S  N+   I   + +  ER +
Sbjct: 458 YR----LGLIKNTADLY------QLTTDDIKNLDRMGEKSAENIIKGIEASKEVPFERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +          N+I    N +   LI +  +G+ IAQ+I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSF----------NDIDELENANLEKLINIDEIGEKIAQSILA 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ NP N   VE  LK     + R E+++S    ++  + +V +G      R + +E + 
Sbjct: 558 YFANPLNRELVER-LKSTGLQLYRREEDLSGYTDKLAGQSIVISGVFAHHSRDEYKELIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ G+N G +KLEKA +LG++IM+E++FL L+
Sbjct: 617 KNGGKNVGSISAKTSFILAGENMGPAKLEKAHKLGIRIMSEDEFLALI 664


>gi|296140594|ref|YP_003647837.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
 gi|296028728|gb|ADG79498.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
          Length = 688

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 239/715 (33%), Positives = 367/715 (51%), Gaps = 49/715 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R+    L +E+  H   YY    P++ D E+DAL +R  A+  AFP+LA    P+ P
Sbjct: 7   EDDRRAWQELAEEVRGHQFRYYVQDAPVLSDGEFDALLKRLQAMEDAFPELAV---PDSP 63

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG  +     V H     SL+ +++  +LR++I R+    Q+    S+ F  E KI
Sbjct: 64  TKLVGGGFSTEFTAVDHLERMYSLDNVFDEGELREWIARV----QRDVGESVTFLTELKI 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGE 190
           DG  + + YE G  V  A RGDG +GEDV+   R +  +P  L+      IP ++EVRGE
Sbjct: 120 DGVALNLVYEDGALVRGATRGDGRTGEDVTLNARTLRDVPHRLTPSDEFPIPAVLEVRGE 179

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249
           V+    DF  LN  ++A G+ P+ANPRN+A+G LR+ NP   +R  L    HGLG+    
Sbjct: 180 VFFRLADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPQITSRRKLGMICHGLGRIEGG 239

Query: 250 FAKGQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVS---YYNEMKSIRSTLPYDIDGLVYK 305
           ++    +E  + +   G PV+   +Q      +V    Y+ E    R    ++IDGLV K
Sbjct: 240 WSPASLHEAYRALAAWGLPVSAHTKQVVGADAVVDRVFYWGEH---RHDPEHEIDGLVVK 296

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VDE +LQ++LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A + PV + G
Sbjct: 297 VDEIALQRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVNVGRTGRVTPYAYMAPVTVAG 356

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN         + +V R G  + +GD V +++AG+VIP+V+  +V+ R    
Sbjct: 357 STVEFATLHN---------ASEVQRKG--VLIGDTVTIRKAGDVIPEVLGPVVDLRDGTE 405

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P  CP C + +      K G   A  RC     C AQ  ERL +   R  F+IEG
Sbjct: 406 KAFVMPVTCPECGAALAPS---KEGD--ADIRCPNTETCPAQLRERLFYLAGRTCFDIEG 460

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +       S      +    D+F+L     T      N  G    +   L  +++  
Sbjct: 461 LGYEAATALTASP----VLHNEGDVFSLTEADLTQVPLFTNDGGALSANAQRLLTNLDVA 516

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L R + +L IRHVG   AR+L          AQE+ ++ A    D   L  V  VG
Sbjct: 517 KTKPLWRVLVALSIRHVGPSAARAL----------AQELGSLEAIAAADVDQLAEVDGVG 566

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            +IA+A+VE++    +   VE             + +V   +E   +V TG+LQ   R  
Sbjct: 567 RVIAEAVVEWFTVGWHREIVEKWRAAGVTMEDERDASVPRNLEGLSIVVTGSLQNFSRDG 626

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E +   G   ++ +S+KT  ++VGD PGSK +KA+QLGV +++E  F  LL +
Sbjct: 627 AKEAILVRGGKAASSVSKKTAFVVVGDAPGSKADKAEQLGVPVLDEAGFEKLLAE 681


>gi|260063119|ref|YP_003196199.1| DNA ligase [Robiginitalea biformata HTCC2501]
 gi|88784688|gb|EAR15858.1| DNA ligase [Robiginitalea biformata HTCC2501]
          Length = 673

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 232/705 (32%), Positives = 374/705 (53%), Gaps = 50/705 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++ +L  E+  H+  YY   +P+I D ++D   +    +    P+     DP  P  ++
Sbjct: 12  EKIQALRDELRDHNYRYYVLDEPVISDYDFDMKLKALQDLEKQHPEFY---DPASPTQRV 68

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +  +   V H  P  SL+  +++E+LR++  RI R      D  + FT E K DG  
Sbjct: 69  GGAITKNFETVVHDYPMYSLDNSYSVEELREWEKRIQRVL---GDVPVTFTCELKYDGAS 125

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ Y+ G  + A  RGDG  G+DV+  +R I +IP  L  + P   ++RGE+ +    F
Sbjct: 126 ISLTYQDGALLRAVTRGDGTQGDDVTTNVRTIRSIPLRLQGDYPNRFDIRGEIVLPLEGF 185

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N E +  G  PY NPRN ASG L+  + + +  R L+  ++G+    ++ A   +E+
Sbjct: 186 ARMNRERVENGEDPYMNPRNTASGSLKLQDSSIVAERPLDCLLYGMAG-RDLGADSHFEI 244

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L   R LGF V +  +       +V+Y     S R  LPY+ DG+V KV+    Q++LG 
Sbjct: 245 LGLARKLGFKVPDTAKLCKNIDEVVAYLEYWDSHRLELPYETDGVVVKVNSLQQQEELGY 304

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW +++KF  +QA+TRL  I  Q+GRTG +TPVA LEPV + G  +  A+LHN D
Sbjct: 305 TAKSPRWAMAYKFKSEQAATRLERITYQVGRTGAITPVANLEPVLLAGTTVKRASLHNAD 364

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I  L           D+R GD V V++ GE+IPK+  +  ++R  ++ P ++ S CP C
Sbjct: 365 QIAKL-----------DVREGDTVYVEKGGEIIPKITGVDFSKRPENSAPTTYISACPEC 413

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            + +VR  NP      A H C     C  Q   R++HF+SR A +IEGLG + ++  FK 
Sbjct: 414 GTELVR--NPGE----AQHFCPNDTGCPPQITGRIQHFISRKAMDIEGLGSETVELLFKE 467

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   AD++TL      +T  +  +    + S  NL + +   R +  ER +F+L
Sbjct: 468 G----LIGDYADLYTL------TTDDLLPLERMAEKSAANLVEGVAASRKVPFERVLFAL 517

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR+VG  +A+ LA+ Y       + I+ ++A + D+   L +V  +G  IA ++VEF+ 
Sbjct: 518 GIRYVGETVAKKLARAY-------KNIDALMAASADE---LQQVDEIGQRIAGSVVEFFS 567

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +P N   VE  LK         E+ +  + +    K  V +G  + I R++ ++ +   G
Sbjct: 568 DPVNRERVEK-LKGHGLQFSLSEEQLRGQTDLFRGKTFVVSGVFESIGRNELKKRIEDNG 626

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             V++ +S +T+ ++ G N G SK EKA + GV I++E QFL +L
Sbjct: 627 GKVTSSVSARTNFLVAGANMGPSKREKADKNGVPIISETQFLEML 671


>gi|221632243|ref|YP_002521464.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159]
 gi|254781441|sp|B9KXM2|DNLJ_THERP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221155911|gb|ACM05038.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159]
          Length = 695

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 239/715 (33%), Positives = 374/715 (52%), Gaps = 55/715 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R  +  L + I  ++  YY  + P + D+EYDAL          +P+L     P+ P 
Sbjct: 15  EVRARVEELRRLIQRYNYEYYVLNAPTVSDAEYDALMLELRRWEEQYPELV---TPDSPT 71

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G         V H IP LSL  +++  ++R +  R+YR   ++D   + F  EPK+D
Sbjct: 72  QRVGAPPAEGFATVQHEIPMLSLGNVFSDGEIRAWAERVYRLSGRQD---VEFVTEPKVD 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEV 191
           G  +++ Y  G  V  A RGDG++GEDV+  +R I  IP  L     + +P ++EVRGEV
Sbjct: 129 GLAVSLLYRDGVLVRGATRGDGYTGEDVTNNVRTIRMIPLRLYPPEGVIVPPVLEVRGEV 188

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH--GLGKTSE 248
           Y++  DF  LN E    G   +ANPRNAA+G LR+L+P+   +R L F     GL + +E
Sbjct: 189 YMNVRDFERLNRERGEQGLPLFANPRNAAAGSLRQLDPSVTASRPLRFAAWDIGLWEGTE 248

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A      L+ +R L  PV    R   +   +++  +  +  R  L ++ DG+V KV++
Sbjct: 249 PPAT-HLATLEFLRQLQIPVVPDYRLCRSVDEVIAECHRWQERRDALEFEADGVVIKVND 307

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +L + LG   R PR   ++KF   + +T + D+   +GRTG LTPVA LEPV IGG ++
Sbjct: 308 RALYQALGVVGREPRGATAYKFPAHEKTTIVRDVIWSVGRTGKLTPVAVLEPVEIGGVIV 367

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHNE+ I+ L            + +GD V+V+R G+VIPKVV  I   R  D +P 
Sbjct: 368 ERATLHNEEEIRRL-----------GLLIGDAVVVQRRGDVIPKVVATIPQRRDGDERPV 416

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C +  +R L  +  +      C   L  S      ++HF SR+A +IEGLG+
Sbjct: 417 DIPRQCPVCGAHTIR-LEGEVDRYCPNPNCPARLKAS------VRHFASRNAMDIEGLGE 469

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +  D F         IR   D++      +    ++  + GFG   V NL  +I   +N 
Sbjct: 470 KISDLFVD----LGIIRSLPDLY------EIDWARVLQLEGFGPKKVENLRKAIEASKNR 519

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              RF+F+LGIRHVG   A+ LA ++ S       I+ ++    D+   L+++P  G  +
Sbjct: 520 PFARFLFALGIRHVGERNAQLLADHFRS-------IDRLMEATIDE---LLQIPGFGPAV 569

Query: 609 AQAIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           AQ++ EF++ P+N   +E   +    ++         V   +  K +V TG L+ + R +
Sbjct: 570 AQSVFEFFREPKNREMIERFRRLGVRMAEEEAAAVATVQGPLAGKTVVLTGRLETLTRSQ 629

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E + + GA V+  +SRKTD +  G +PGSK  +AQQLGV I+ EE  L +L++
Sbjct: 630 AEELLRRAGAHVTDSVSRKTDYVFAGADPGSKYVRAQQLGVPILGEEDLLRMLRE 684


>gi|89898194|ref|YP_515304.1| NAD-dependent DNA ligase LigA [Chlamydophila felis Fe/C-56]
 gi|123735917|sp|Q254X9|DNLJ_CHLFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89331566|dbj|BAE81159.1| DNA ligase [Chlamydophila felis Fe/C-56]
          Length = 662

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 235/708 (33%), Positives = 386/708 (54%), Gaps = 60/708 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R++  +L ++I   D  YY    PII D +YD   ++  +I    P+      P+    
Sbjct: 6   TREQYLALCKDIEEDDYRYYVLHDPIISDYDYDMKMQKLLSIEAQHPEWRVLWSPS---M 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G  ++ S   VTHS P LS+   + +E+L  F +R+    +K    +  +TLE KIDG
Sbjct: 63  RLGDRISGSFPVVTHSHPMLSIANAYTLEELNDFFSRV----EKTLGYTPTYTLELKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + IRYE+   V A  RG+G  GED++  IR I ++P  L    PE +EVRGEV+ ++ 
Sbjct: 119 IAVAIRYEQRVLVQALSRGNGRQGEDITTNIRTIRSLPLRLPKEAPEFLEVRGEVFFTRA 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  +N       +  +ANPRNAA G L+ L+  +  +  N  +   G  +E   +  Y+
Sbjct: 179 TFEQINSIQRQSEKPEFANPRNAAGGTLKLLSAKEAAQR-NLELSIYGAWAEENTESHYD 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L   +  GFPV    RQ  +   +V   +E+  IR  LP +IDG+V KVD    QK LG
Sbjct: 238 NLMLCQKWGFPVFGRPRQYKSVEEVVKALHEIAKIRDQLPMEIDGVVIKVDNTEDQKVLG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+  RW +++K+A +Q  T L DI IQ+GRTG+LTPVA+L PV + G+ ++ A+L+NE
Sbjct: 298 MTAKHYRWALAYKYAPEQGETILEDILIQVGRTGVLTPVAKLRPVFLSGSKVSRASLYNE 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           + I+            +DIR+GD V V++ GE+IPKVV + + +R    +P+  P +CP+
Sbjct: 358 EEIE-----------RKDIRIGDTVYVEKGGEIIPKVVGVCLEKRPEGTKPWVMPEYCPV 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  RV R+ +        + RCT   +CSA  +E+++ FV R+A +IE LG++ +   F 
Sbjct: 407 CHERVSRESDK------VSVRCTNS-SCSAGTIEKIRFFVGREALDIEHLGEKVITKLF- 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERF 553
                       D+  + RR        E++L   GF D S+ N+  SI K ++  LERF
Sbjct: 459 ------------DLGLIHRRCDIFQITEEDLLQVPGFKDKSIKNVLKSIEKAKSAPLERF 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I +LGI +VG   A +LA+++LS       ++ +++ + ++   L  +  +G  +A++IV
Sbjct: 507 IAALGIPYVGIGGANALAQHFLS-------LDAVMSASLEE---LKVIDGIGSKVAESIV 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +++    N+  ++ +L     S+G +       S+  + K  V TG+L+K+ R +A+  +
Sbjct: 557 DYFHQSDNVEEIQKML-----SLGVNVLPYSRASASCQGKTFVITGSLEKMTRSEAEASI 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              G  V + +S+  + ++VG +PGSKL+KAQ+L + I+NE   L +L
Sbjct: 612 RNCGGKVGSSVSKSINYLVVGKDPGSKLKKAQELQIPILNESDLLKIL 659


>gi|225873424|ref|YP_002754883.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196]
 gi|254781243|sp|C1F7S7|DNLJ_ACIC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225792636|gb|ACO32726.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196]
          Length = 677

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 249/717 (34%), Positives = 370/717 (51%), Gaps = 53/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S   A +++ SL + I +H+  YY   +P I D  +D L R+   +    P+L     P
Sbjct: 1   MSHASAAQQIESLRESIRHHEYLYYVQDQPEIDDLAFDELMRKLQRLEAEHPELI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      KV HS P LSL+ + + E+LR +  R+    Q   +  I +  E
Sbjct: 58  DSPTQRVGGKPKEGFAKVAHSRPMLSLDNVNSEEELRDWERRVRE--QAGQNAEIEYVCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------RVLSLNIPEII 185
            K+DG  + + Y  G+      RGDG  GEDV+  +R I ++P      ++    +P   
Sbjct: 116 YKLDGLSMALHYRDGQLARGLTRGDGEIGEDVTTNVRTIRSVPLSIADGKLQQAKMPANF 175

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH-GL 243
           EVRGEV +    F  LN+E  A G  P ANPRNAA+G +R L P  +  R L+F+ +  L
Sbjct: 176 EVRGEVVMPFTAFEKLNEEREAQGLAPAANPRNAAAGTIRTLEPNIVAQRRLDFYAYFAL 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            +  E     Q E L  +  LGF VN     A +   +V + N  +  RS L Y+IDG+V
Sbjct: 236 TEKGEDAFGEQEEALDALATLGFRVNQHRHAAKSIETVVEFVNRAEEHRSRLGYEIDGVV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+   LQ++LG   R+PRW +++KFA +   T++ DI +Q+GRTG LTPVA L PV +
Sbjct: 296 VKVNSAVLQRRLGYTGRAPRWAVAYKFAARSGVTQVEDIQVQVGRTGKLTPVAWLAPVQV 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +T ATLHN D I+ L            +R+GD V ++R G+VIPKVV+++ +  HP
Sbjct: 356 GGTTVTRATLHNADEIERL-----------GLRIGDFVRIERGGDVIPKVVEVVDDAEHP 404

Query: 424 -DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + F FP  CP C S VVR          A +RC     C A+  E L HF SR   N
Sbjct: 405 RGTKHFHFPHACPACGSEVVRTPGE------ADYRCV-NTDCPARLRESLLHFASRGVMN 457

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG+G+  +            ++  +DI++L   Q  S  ++      G  S T L   I
Sbjct: 458 IEGMGEAIVMQLLGR----GLVKTVSDIYSLTEEQLVSLERM------GKKSATALLGEI 507

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           +K R   L+R +F LGIR VG   A++LA+ Y S     Q     +   ND         
Sbjct: 508 DKSRQAPLDRVLFGLGIRFVGERTAQALAEEYGSMDALMQASREELERVND--------- 558

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG  +++AI EF+  PRN   VE  L+E        ++  +S++     V TGTL  + 
Sbjct: 559 -VGPRVSEAIREFFDEPRNRDLVER-LREAGLRFTGEKRKKTSQLAGLTFVLTGTLPGLS 616

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+  +   G  VS  +S+KT+ ++ G + GSKLEKA  LGV +++E   + +L+
Sbjct: 617 RDEAKGKIENAGGHVSGSVSKKTNYVVAGADAGSKLEKANSLGVPVIDEAALIKMLE 673


>gi|330981936|gb|EGH80039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 787

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/623 (34%), Positives = 338/623 (54%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+             + + + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P+++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+    P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  +I   R  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +          +P VG  +
Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AYEIHSFFEDEHNRSVIDALLGE 598



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  + +       +  II+    DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQA--LPE 663

Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+ +  N     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDSANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779

Query: 719 QQYNTTL 725
            +    +
Sbjct: 780 AELGVAV 786


>gi|226945096|ref|YP_002800169.1| NAD-dependent DNA ligase LigA [Azotobacter vinelandii DJ]
 gi|254781546|sp|C1DN27|DNLJ_AZOVD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226720023|gb|ACO79194.1| DNA ligase, NAD-dependent [Azotobacter vinelandii DJ]
          Length = 784

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/625 (35%), Positives = 343/625 (54%), Gaps = 46/625 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  EI  H+  YY    P + D+EYD L     A+    P+L     P  P
Sbjct: 5   QTAAERIARLRSEIDEHNYRYYVLDAPSVPDAEYDRLFNELKALEAEHPELV---TPESP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE   +  +V H +P LSL   +  EDL  F   + +   +  +  + ++ EPK+
Sbjct: 62  TQRVGGEALAAFGQVRHELPMLSLGNAFAEEDLLDFDRNVCKGLDRGIE-VVEYSCEPKL 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  +++ YE G+ V  A RGDG +GED++A +R +  IP R+     P ++EVRGE+Y+
Sbjct: 121 DGLAVSLLYEDGQLVRGATRGDGSTGEDITANVRTVRNIPLRLHGQGWPAVLEVRGEIYM 180

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--TSEIF 250
            +  F ALN   I  G K +ANPRNAA+G LR+L+P     R L F  +G+G+   +E+ 
Sbjct: 181 PRAGFEALNARAIENGGKTFANPRNAAAGSLRQLDPKITAGRPLEFCGYGIGRFEGAEV- 239

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +    +L+ +R  G P++  ++ A +    ++YY  +   R  L YDIDG+V+KV+   
Sbjct: 240 PQTHTSLLETLRRWGLPISRELQLARSVQDCLAYYRAIGERRQGLAYDIDGVVFKVNRLD 299

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG RAR+P W I++KF  ++  T LL ++ Q+GRTG +TPVARL+PV + G  ++N
Sbjct: 300 WQRELGFRARTPHWAIAYKFPAQEELTELLGVEFQVGRTGAITPVARLKPVQVAGVTVSN 359

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D +  L            + +GD V+V+RAG+VIP+++ ++   R  DA+P   
Sbjct: 360 ASLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQIMQVVGERRPADARPVEV 408

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAA------HRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           P  CP+C S V R    K GK  A+      +RC G LAC AQ  + + HFVSR A +I+
Sbjct: 409 PRQCPVCGSAVERTQLVKRGKGRASLSEGAIYRCVGRLACQAQLKQAIVHFVSRRAMDID 468

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ ++    +      ++ PAD++ L   Q      +  + GF +VS  NL  +I  
Sbjct: 469 GLGERIVEQLVDT----GLVKSPADLYILTFEQ------LVVLDGFAEVSSNNLLAAIAA 518

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R  SL RFI++LGI  VG E A+ LA+   S     + +  +          LI +P V
Sbjct: 519 SRRPSLARFIYALGIPDVGEETAKRLARALGSLTRIEKALPEV----------LIWLPDV 568

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL 629
           G  +A  I  F+++  N+  +  LL
Sbjct: 569 GLEVAHEIHSFFRDEHNLTVIGQLL 593



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 20/183 (10%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL   +  L I  + A  A+ LA+        A  +  +I  + D WL+L     + +  
Sbjct: 614 SLGELLDKLDIPGIAATGAKKLAEA-------AGSLEAVIGLSQD-WLTLNTTKGLSEKA 665

Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRH---EKNVSS--EIENKKLVFTGTLQK 660
            QA+ EF+  P N+    A+E  L+E     G H   E+  +    +  +  V TGTL+ 
Sbjct: 666 RQALREFFAVPANVEHARAIEGQLRE----FGMHWESERRCAEGLPLAGQTWVLTGTLES 721

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R + +  +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++EE FL LL+Q
Sbjct: 722 MSREQGKARLESLGAKVAGSVSAKTACVVAGPGAGSKLAKAGELGVKVLDEEAFLALLRQ 781

Query: 721 YNT 723
             +
Sbjct: 782 LES 784


>gi|190575033|ref|YP_001972878.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia K279a]
 gi|254781423|sp|B2FKJ1|DNLJ_STRMK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190012955|emb|CAQ46587.1| putative DNA ligase [Stenotrophomonas maltophilia K279a]
          Length = 821

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/658 (34%), Positives = 349/658 (53%), Gaps = 85/658 (12%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L ++I+  +  Y++   P I D +YD + R  +A+    P+LAR++ P     ++G   +
Sbjct: 12  LRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPT---QQVGARPS 68

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               +V H++P LSL   ++ E++  F+ RI    ++    S+ F+ EPK+DG  I++RY
Sbjct: 69  GRFPEVRHAVPMLSLSNAFSDEEVADFVRRID---ERLGRRSLRFSAEPKMDGLAISLRY 125

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALN 202
           E G FV  A RGDG +GEDV+A +R I  IP R+   + P+++EVRGEVY+++ DF A N
Sbjct: 126 EDGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGEVYMARADFEAYN 185

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQK 260
           +     G K  ANPRNAA+G LR+L+P     R L+FF +G G+             L +
Sbjct: 186 ERARLQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHSGTLAQ 245

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +   GFPV+   +      G++ YY  +   R  LP+DIDG+VYK+D+ + Q+ +G  +R
Sbjct: 246 LGAWGFPVSELCKVVEGTDGLLGYYRTIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSR 305

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL PV + G +++NATLHN D I 
Sbjct: 306 APRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIA 365

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            LD           +RVGD V+V+RAG+VIP+VV +I++ R     P+  P+ CP+C S 
Sbjct: 366 RLD-----------VRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTRCPVCGSE 414

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE-------------GLG 487
           +VR+      +  AA RC+G L+C AQ+ E + HF SR A +I+             G+ 
Sbjct: 415 IVRE------EGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIV 468

Query: 488 KQQLDFFFKSEDPAFSIRIPADI-----------------------------------FT 512
           K   D +  S D    +++  D                                    + 
Sbjct: 469 KSVADLYRLSRDTLLHLKLVLDAEEPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPGWR 528

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
            Q   Q ++ +  N          NL  +I+  R  +LER +F+LGI HVG   A++LA+
Sbjct: 529 AQALAQPASFEW-NTKKIATKWADNLIAAIDASRAATLERVLFALGIEHVGESTAKALAQ 587

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           ++   +        +I H    W    RVP +G  +A+++  F++   N  A++ LL+
Sbjct: 588 WFGDLE--------LIRHLP--WPLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQ 635



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 59/101 (58%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           + A E  ++E+        + V+  ++ + +V TGTL ++ R  A+E +  LGA VS  +
Sbjct: 721 LLAAENAMREILAKAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSV 780

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S+KT  ++ G   GSKL+KAQ LGV + +E++ L  L ++ 
Sbjct: 781 SKKTSFVVAGTEAGSKLDKAQSLGVSVWDEDRLLAYLAEHE 821


>gi|150005810|ref|YP_001300554.1| DNA ligase [Bacteroides vulgatus ATCC 8482]
 gi|237725408|ref|ZP_04555889.1| DNA ligase [Bacteroides sp. D4]
 gi|319640984|ref|ZP_07995691.1| DNA ligase [Bacteroides sp. 3_1_40A]
 gi|166215396|sp|A6L5G8|DNLJ_BACV8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149934234|gb|ABR40932.1| DNA ligase [Bacteroides vulgatus ATCC 8482]
 gi|229436095|gb|EEO46172.1| DNA ligase [Bacteroides dorei 5_1_36/D4]
 gi|317387362|gb|EFV68234.1| DNA ligase [Bacteroides sp. 3_1_40A]
          Length = 665

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 242/707 (34%), Positives = 375/707 (53%), Gaps = 56/707 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++G 
Sbjct: 7   IDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRVGS 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139
           ++N +  +V H  P LSL   ++  ++ +F  R+     KK  N  F    E K DGT I
Sbjct: 64  DINKNFTQVVHKYPMLSLANTYSETEVTEFYDRV-----KKSLNEDFEICCEMKYDGTSI 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    F
Sbjct: 119 SLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPETFEIRGEILMPWVVF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L     +   G YE 
Sbjct: 179 EELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+P+ + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+GL           D+ +GD V V++ GE+IPK+V +  + R        F + CP C
Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR      G+  AA+ CT   AC  Q   +++HF+SR A NI+GLG + +D F++ 
Sbjct: 407 GSKLVR----YEGE--AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD++TL+      T+ I N+   G+ S  N+   I + + +  ER +F+L
Sbjct: 461 G----LIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           GIR VG  +A+ +AK + S    A   ++N           LI V  +G+ IAQ+I+ ++
Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADASLDN-----------LIHVDEIGEKIAQSILLYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            NP+N   +E  L+     +   E++ S    ++  K +V +G      R + +E + + 
Sbjct: 560 ANPKNRDIIER-LRVAGVRLEADEEDTSEHTDKLAGKSIVISGVFAHHSRDEYKELIEKH 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           G      +S KT  I+ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|76801093|ref|YP_326101.1| NAD-dependent DNA ligase LigA [Natronomonas pharaonis DSM 2160]
 gi|121729348|sp|Q3ITK1|DNLJ_NATPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76556958|emb|CAI48532.1| DNA ligase (NAD) [Natronomonas pharaonis DSM 2160]
          Length = 691

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 234/719 (32%), Positives = 362/719 (50%), Gaps = 53/719 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L    A +++ +L + I +HD  YYQ + P+I D  YD L  R + +   F    R
Sbjct: 19  PVDELDAASATRQVETLREAIRFHDYRYYQLADPVISDRAYDQLFERLERLESKF---DR 75

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSI 126
           S     P  ++GGE    L  V H  P  S+E    ++D+R F TRI  R      +  +
Sbjct: 76  SS-ATSPTQRVGGEPLDELETVEHVAPMRSIESSVEVDDIRDFDTRIQERLAAAGYEGPV 134

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +  EPK DG  + + YE+G+   AA RGDG  G+DV+A +R I ++P  L  + P  + 
Sbjct: 135 RYLCEPKFDGLSVELVYEEGELSRAATRGDGQEGDDVTANVRTIRSVPLTLDGDCPSFLA 194

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGE+++ K+ F   N E +  G +P++NPRNAA+G LR+L+P+    R L+ FV  +  
Sbjct: 195 VRGEIFMPKDAFQEYNRERLERGEEPFSNPRNAAAGTLRQLDPSVTAERPLDCFVFDILD 254

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 + +    + +   GF V++   + +     +++  EM   R++L Y+IDG+V K
Sbjct: 255 DGGRGFETRMAEHEAVESWGFQVDDHTARVDDIEAAIAFREEMLDGRASLDYEIDGIVIK 314

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +D       LG  AR+PRW  ++KF  +   T + DI +Q+GRTG LTPVA L+PV + G
Sbjct: 315 LDRKDACALLGATARAPRWAYAYKFPARTEETTVRDIVLQVGRTGRLTPVALLDPVEVSG 374

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ ATLHN   I  L            + +GDRV +KRAG+VIP +  ++ +ER    
Sbjct: 375 VEVSRATLHNPQQIAEL-----------GVGIGDRVTLKRAGDVIPYIEAVVDSEREAH- 422

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F FP  CP+C+S + RD     G L     CTGG+AC AQ    ++H+ SR   +IEG
Sbjct: 423 --FEFPDRCPVCESPLERD-----GPLA---YCTGGVACPAQLRRAVEHYASRSGLDIEG 472

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG+  +D      D     R+P D++ L      S   +  + G+G  S  NL + +   
Sbjct: 473 LGESAVDQLV---DAGLVERLP-DLYDL------SVADVAELDGWGRTSAENLLEELEAS 522

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
               L  F+ +LGI  VG   A  +A+          E   + A  +     L  V  +G
Sbjct: 523 TEPPLPAFLSALGIPGVGTTTAADIAR----------EFGTLDAVMDATAEELRAVDGIG 572

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
             +   I EF+ + RN   +E L K  V P      +     +  +  VFTG+L  + R 
Sbjct: 573 PTLGGEIAEFFDSDRNQQVIEQLRKRGVDPEPA---ETAGDALSGQTFVFTGSLDGLTRE 629

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +A E V   G   +  +S  TD ++VGD+PG  K E A + GV+ +++  F  LL+ + 
Sbjct: 630 EAHELVETSGGTATGSVSGNTDYLVVGDSPGQRKREAANEHGVETLSQSDFESLLESHG 688


>gi|330808456|ref|YP_004352918.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376564|gb|AEA67914.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 785

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/626 (35%), Positives = 342/626 (54%), Gaps = 52/626 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L  E+  H+  Y+   +P I D+EYD L     A+    P+L  S+ P   +    G
Sbjct: 8   IQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQRV----G 63

Query: 81  EMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPK 133
            + LS F +V H IP LSL   ++   +R+F  R+         +      ++ ++ EPK
Sbjct: 64  SVALSAFSQVRHEIPMLSLGNAFDETTMREFDRRVTEGLDLPMGDLLGGGAAVEYSCEPK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  +++ Y+ G  V  A RGDG +GED+S  +R +  IP ++     P ++EVRGEVY
Sbjct: 124 LDGLAVSLLYQDGMLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPLLEVRGEVY 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           +SK  F  LN   +  G K +ANPRNAA+G LR+L+ + IT  R L F  +G+G+ +   
Sbjct: 184 MSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGIGQVTADI 242

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A      L++++  G P++  ++ A+     + YY ++   R+ LPY+IDG+V+KV+  +
Sbjct: 243 ADTHIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFKVNSIA 302

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G  + N
Sbjct: 303 SQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVAN 362

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +  L            + +GD V+++RAG+VIP+VV +I   R  DA+P   
Sbjct: 363 ATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVITERRPDDARPVEI 411

Query: 431 PSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           P  CP+C S V R    K  K        A +RC G LAC AQ  + + HFVSR A +IE
Sbjct: 412 PRQCPVCGSHVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIE 471

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ ++      D    +  PAD++ L   Q      + ++ GF ++S  NL  +I  
Sbjct: 472 GLGEKSVEQLV---DEGL-VGSPADLYALTFEQ------VVDLEGFAELSSKNLLAAIVD 521

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  SL RFI++LGI  VG E A+ LA+   S +     +  ++ +          +P V
Sbjct: 522 SKKPSLARFIYALGIPDVGEETAKVLARSLGSLERVQAAVPQVLTY----------LPDV 571

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK 630
           G  +A  I  F+++P N   ++ LL+
Sbjct: 572 GLEVAHEIHSFFEDPHNRQVIKDLLR 597



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 8/153 (5%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
           Q  A +  ++ A  N DWL + +   + +  A A+ EF+    N    EA  +++    G
Sbjct: 636 QKLADKFGSLEAVMNADWLDMRQA--LPEKQANAVREFFAVAANRQQAEAAEQQLR-DFG 692

Query: 638 RHEKNVSSEIEN-----KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
            H ++    +E         V TG+L+ + R  A++ +  LGA V+  +S KT  ++ G 
Sbjct: 693 MHWQSEKKVVEGLPEAGHTWVLTGSLELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGP 752

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             GSKL KA +LG+K+++EE F+  L Q+  T+
Sbjct: 753 GAGSKLTKANELGLKVLDEEAFVVFLSQHGITV 785


>gi|327541957|gb|EGF28460.1| NAD-dependent DNA ligase LigA [Rhodopirellula baltica WH47]
          Length = 754

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 238/731 (32%), Positives = 387/731 (52%), Gaps = 86/731 (11%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L  EI+ H+  YY  + P I D +YD L      + + +P+L +   P+ P   +GG
Sbjct: 64  VQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENEYPELRQ---PDSPTQLVGG 120

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++   L +V H +P LS++  ++ E+L   + RI +  + +   S+ +T+E KIDG   +
Sbjct: 121 DVVDQLVQVPHRVPMLSIDNTYSREELAAAMERIEKSLEGE---SVAWTMEYKIDGVAGS 177

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR-----------VLSLNIPEIIEVRG 189
           IRYE G+   A  RG+G  G+D++  +R I  +PR           V   N+PE++EVRG
Sbjct: 178 IRYENGELTLALTRGNGQVGDDITHNVRTIRELPRSIADAALAHPEVADGNVPEVLEVRG 237

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E+Y++  D   LN      G +P+ N RN  +G +R L+P    +R + FF HG G+   
Sbjct: 238 ELYMTDADLADLNVRQTEAGHEPFKNTRNVTAGTIRLLDPKIAASRNIRFFCHGSGELVG 297

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + A      L+ ++ LG P+   V     + N    I     EM      LP++IDG+V+
Sbjct: 298 VQASDHMTFLEHVQALGIPIAPDVVRFENKENALQAIAKLELEMPD----LPFEIDGIVF 353

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD F  +++LG R++SPRW+I++KF   +A T L  ID+Q+G+TG +TPVA L PV+I 
Sbjct: 354 KVDSFEQREKLGVRSKSPRWVIAYKFERYEAITTLEAIDVQVGKTGTITPVAYLTPVDIA 413

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              ++ A+LHN D I+ L           D+RVGD V+V++AG++IPKVV +   E+H  
Sbjct: 414 DTTVSRASLHNADEIERL-----------DVRVGDTVVVEKAGKIIPKVVRV---EKHAR 459

Query: 425 AQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            +P   F FP+ CP C   + RD   + G  +   RCT   AC AQ  +RL +F SR   
Sbjct: 460 TKPLPKFEFPTHCPQCDEVLTRD---EGGVYI---RCTNP-ACPAQLRQRLVYFGSRTGM 512

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL-----------QRRQQTSTTKIENILGF 530
           +I+GLG++ +D   + E     +   AD++ L           + R+      IE  + F
Sbjct: 513 DIDGLGEEVVDLLLQKE----LVENYADLYRLNVDELAELTWPRLRKGKGDEMIE--VQF 566

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL-AKYYLSYQNFAQEINNIIA 589
           G  +  +L   IN+ R   L R + S+ IRH+G  +A+ + AK++           N+  
Sbjct: 567 GRKNAESLVAGINESRTRGLARVLSSISIRHIGPRVAKLITAKFW-----------NLDL 615

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFY------QNPRNICAVEALLKEVSPSIGRHEKNV 643
             +     L  +  +GD IA+++V+F       Q   ++ AV   + E  P +   ++  
Sbjct: 616 LRSAKAEDLAAIHEIGDRIAESLVKFIHSESGSQTLSDLDAVGVTMSEPEP-VATPDEEA 674

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +  +  K +V TGTLQ   R + +  + +LG   ++ +S+KTD +I G+  GSKL KA+ 
Sbjct: 675 NLPLAGKNIVATGTLQHYTRDEIKARIEELGGRAASSVSKKTDFLIAGEKAGSKLTKAES 734

Query: 704 LGVKIMNEEQF 714
           LGV++++E+ F
Sbjct: 735 LGVEVLSEDDF 745


>gi|241896133|ref|ZP_04783429.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313]
 gi|241870647|gb|EER74398.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313]
          Length = 675

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/707 (32%), Positives = 380/707 (53%), Gaps = 58/707 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A +++  L+ ++      YY+   P + D+EYD + +R   +  AFP+L    +P+   
Sbjct: 11  EAAQQMEKLQLQLQQWAKEYYENDSPTVEDAEYDKVYKRLQELEAAFPELV---NPDSIT 67

Query: 76  NKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            ++GG    S L KV H +P LSL  ++++++L  ++       QK     + +  E KI
Sbjct: 68  QQVGGHKTKSELPKVEHDVPMLSLGDVFSMDELTNWMVNT----QKSFTEELIYNAELKI 123

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++ Y++G  V A+ RGDG+ GEDV++ I+ +  IP+ LS   P  IEVRGE+Y+ 
Sbjct: 124 DGLAISLVYQEGLLVQASTRGDGNVGEDVTSNIKYVDDIPKKLSE--PLSIEVRGEIYMP 181

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYLNFFVHGLGKTSEIFAK 252
           K  F++LN+     G   +ANPRNAA+G LR+L+P  T   +   F    +     +  K
Sbjct: 182 KEAFVSLNESRERDGLPTFANPRNAAAGSLRQLDPLITKKRKLSAFMYQVVDAPRSLNIK 241

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L ++  LG P NN      +   + +Y     + R +L Y IDG+V KV+  S  
Sbjct: 242 TQSELLIRLSQLGLPANNTNAVVTSTTDVENYIVSQTNHRDSLSYGIDGIVIKVNNLSFH 301

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   + P+W I++KF  ++A T +  I+  +GRTG +TP A + PV + G  ++ A+
Sbjct: 302 EELGNTVKVPKWAIAYKFPPEEAETIIQGIEWTVGRTGAVTPTAVMNPVQLAGTTVSRAS 361

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DY++            +DIR+GD V + +AG++IP+V  +I+  R  D+  +  P 
Sbjct: 362 LHNADYLQ-----------AKDIRIGDTVTLHKAGDIIPEVGKVIIERRPEDSVLYELPK 410

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +V       G++  A RC    AC AQ  E L HF SR+A NI+GLG + + 
Sbjct: 411 ECPACHQSLVH----VDGEV--ALRCINP-ACPAQVQESLTHFASRNAMNIDGLGPKIIS 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      I    D++ LQ         + N+  FGD +  NL ++IN  +N S+ER
Sbjct: 464 QLLAH----GLITKVTDLYRLQYDD------LINLDKFGDTAANNLLNAINLSKNNSVER 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIR+VGA+ A+++A  + + +  A+   + IA          ++P +G  I  ++
Sbjct: 514 LLFGLGIRNVGAKAAKTIATKFGNLKAIAEATADDIA----------KLPGMGLTIGDSV 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQRHKAQ 667
            +++   +   A + L   +   +     + ++ I+N     KK+V TG+L    R  A 
Sbjct: 564 AQYFATEQ---AQQLLNDFIELKVNTEFTSQTAVIDNPMFSGKKIVLTGSLSLFSRRDAS 620

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            ++   GA+V++ +S+KTD++I G+N GSKL KAQ L ++I +E+Q 
Sbjct: 621 AWLESQGAIVASSVSKKTDLLIAGENAGSKLTKAQDLNIEIWSEKQL 667


>gi|294776463|ref|ZP_06741938.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510]
 gi|294449660|gb|EFG18185.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510]
          Length = 665

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 242/707 (34%), Positives = 375/707 (53%), Gaps = 56/707 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++G 
Sbjct: 7   IDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRVGS 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139
           ++N +  +V H  P LSL   ++  ++ +F  R+     KK  N  F    E K DGT I
Sbjct: 64  DINKNFTQVVHKYPMLSLANTYSETEVTEFYDRV-----KKSLNEDFEICCEMKYDGTSI 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    F
Sbjct: 119 SLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVVF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L     +   G YE 
Sbjct: 179 EELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+P+ + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+GL           D+ +GD V V++ GE+IPK+V +  + R        F + CP C
Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR      G+  AA+ CT   AC  Q   +++HF+SR A NI+GLG + +D F++ 
Sbjct: 407 GSKLVR----YEGE--AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD++TL+      T+ I N+   G+ S  N+   I + + +  ER +F+L
Sbjct: 461 G----LIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           GIR VG  +A+ +AK + S    A   ++N           LI V  +G+ IAQ+I+ ++
Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADASLDN-----------LIHVDEIGEKIAQSILLYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            NP+N   +E  L+     +   E++ S    ++  K +V +G      R + +E + + 
Sbjct: 560 ANPKNRDIIER-LRVAGVRLEADEEDTSEHTDKLAGKSIVISGVFAHHSRDEYKELIEKH 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           G      +S KT  I+ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|210621776|ref|ZP_03292805.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275]
 gi|210154540|gb|EEA85546.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275]
          Length = 678

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 237/708 (33%), Positives = 393/708 (55%), Gaps = 53/708 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  + ++ +L  +I+YH D YY    P I D EYD L +    +    P+  R + P+  
Sbjct: 4   EDIKLQIDNLIDKINYHSDKYYNQDTPEISDFEYDMLMKELIKLEAENPEFKRVDSPS-- 61

Query: 75  LNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
            N++GG M L  F +VTH  P LSL   ++ EDLR F  R+    ++  D  + + +E K
Sbjct: 62  -NRVGG-MALDKFDQVTHKNPMLSLSNAYSAEDLRDFDRRV----REMTDGDVEYVVEFK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + I YE G+F  AA RG+G  GED+S  +  I +IP  L ++    I VRGEVYI
Sbjct: 116 IDGLSVGITYENGEFKSAATRGNGIIGEDISKNVMTIKSIP--LKIDDKREIIVRGEVYI 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           SK +F  +N+       + +ANPRN A+G LR+L+      R L+ FV  L   +E+   
Sbjct: 174 SKENFEKVNEYQEEHDLQIFANPRNLAAGSLRQLDSKLTAKRPLDIFVFNLENINELDGI 233

Query: 253 GQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             + + L+ ++ LGF V+   +   +   ++ +       R +L +DIDG+V KV+    
Sbjct: 234 DTHSDSLEYLKKLGFSVSENYKICKSIDEVIEFIEYWTENRGSLKFDIDGMVVKVNNIEQ 293

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           + ++G  A+SPRW I++KF  ++  +++LDI++++GRTG +TP A LEPV + G  ++ A
Sbjct: 294 RNEMGFTAKSPRWAIAYKFPAERKKSKILDIEVEVGRTGTITPTAILEPVRLAGTSVSRA 353

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED+I+            +DI++ D V+V++AG++IP++V+++  +R  D + F  P
Sbjct: 354 TLHNEDFIR-----------EKDIKLFDHVIVQKAGDIIPQIVEVVKEDRTGDEKDFVMP 402

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C    VR      G+  AA +C   ++C AQ    + HFVSR+A +I+G+G+  +
Sbjct: 403 SVCPECGEPTVR----LEGE--AAVKCI-NISCPAQIRRGMIHFVSREAMDIDGMGESII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             F K       I+  +DI+ L++ Q     ++      G+ S  NL  +I K ++  L 
Sbjct: 456 TLFLKE----GLIKDVSDIYYLKKEQIVPLERM------GEKSADNLIKAIEKSKSNDLW 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I  LGIR VG + A+ LA  + S       ++ II   N D   L ++   G I++++
Sbjct: 506 RLINGLGIRFVGVKGAKILASNFSS-------LDEII---NADVERLQQLEEFGSIMSES 555

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +V+F++  +N+  ++ L    V+   G  + + +    E  K+V TGTL  ++R++A+E 
Sbjct: 556 VVKFFREEQNLAVIQKLKDAGVNTEAGEDKSEGIPQLFEGMKIVLTGTLPTLKRNQAKEI 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +   G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++E+ FL L
Sbjct: 616 IELRGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEDMFLKL 663


>gi|327402054|ref|YP_004342892.1| DNA ligase [Fluviicola taffensis DSM 16823]
 gi|327317562|gb|AEA42054.1| DNA ligase [Fluviicola taffensis DSM 16823]
          Length = 670

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 243/721 (33%), Positives = 380/721 (52%), Gaps = 67/721 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++ +A+ ++  L +E++ H+  YY  S P I D E+D L +    +   FP+LA    P
Sbjct: 1   MNLSEAQLKIEQLTKELTLHNHNYYVESNPTISDYEFDVLLKELQDLETQFPELASDLSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++GG++      V H  P LSL   ++ E++ ++  R+    +K     I +  E
Sbjct: 61  T---KRVGGDITKKFATVVHKFPMLSLSNSYSEEEIIEWEQRL----KKLATGPIEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I IRY  GKF  A  RGDG  GED+SA ++ I TIP  L  + P+  E+RGE+
Sbjct: 114 LKYDGVAIGIRYVNGKFARAVTRGDGTKGEDISANVKTIRTIPLTLKGDYPDDFEIRGEI 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           +  K +F A+N +   +G   +ANPRN+ASG L+  +   +  R L+ F++G+    ++ 
Sbjct: 174 FFPKANFEAMNRQREELGEPVFANPRNSASGTLKSQDSKVVAERGLDCFLYGV-YGDDLL 232

Query: 251 AKGQYEMLQKMRCLGF--PVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +   E +QK +  GF  P        NTF   GI+ + +     R  LP++IDG+V KV
Sbjct: 233 MESHLESIQKAQEWGFKTPQEKNKYILNTFSIEGIMEFIHYWDKERYNLPFEIDGIVIKV 292

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           + +  Q  LG  A+SPRW I++KF  ++ ST L ++  Q+GRTG +TPVA L PV +GG 
Sbjct: 293 NNYDQQADLGFTAKSPRWAIAYKFKAERVSTTLKEVTYQVGRTGAITPVANLIPVLLGGT 352

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++  A+LHN D I+ L           D+ + D V V++ GE+IPK+V +  + R  +A+
Sbjct: 353 VVKRASLHNADQIEKL-----------DLYLEDSVYVEKGGEIIPKIVGVQTDSRPVNAE 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              F   CP C S + R    + G++   H C   L C  Q   R++HF+SR A NI+GL
Sbjct: 402 KVIFIERCPECNSELQR----REGEV--QHYCLNDLVCPPQVKGRMEHFISRKAMNIDGL 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D  +K E  A SI   AD++ L   Q      + N+    D S  NL   I   +
Sbjct: 456 GAETIDLLYK-EGLADSI---ADLYDLTFDQ------VVNLERMADKSANNLIIGIRNSK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I  ER +F+LGIR VG  +A+ LA  +          NNI A +   +  LI V  +G+
Sbjct: 506 EIPFERVLFALGIRFVGETVAKKLAYAF----------NNIDAISKATYDELIAVDEIGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
            IA A+ +F+Q+ R I  +E L        ++EV+          S+ +E K  V +G  
Sbjct: 556 KIAIAVQKFFQDERAIQIIERLKIAGVQFEVEEVALD--------SNSLEGKSFVVSGVF 607

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
            K  R + ++ + + G      +S KT  ++ G+N G +KLEKA  LG+ I++EE F+ +
Sbjct: 608 SKFSRDEIKDLIEKNGGKNVGSISAKTTYVLAGENMGPAKLEKASSLGIPIISEEDFIQM 667

Query: 718 L 718
           L
Sbjct: 668 L 668


>gi|194366356|ref|YP_002028966.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia R551-3]
 gi|254781422|sp|B4SP88|DNLJ_STRM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194349160|gb|ACF52283.1| DNA ligase, NAD-dependent [Stenotrophomonas maltophilia R551-3]
          Length = 821

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/657 (34%), Positives = 353/657 (53%), Gaps = 83/657 (12%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L ++I+  +  Y++   P I D +YD + R  +A+    P+LAR++ P     ++G   +
Sbjct: 12  LRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPT---QQVGARPS 68

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               +V H++P LSL   ++ E++  F+ RI    ++    S+ F+ EPK+DG  I++RY
Sbjct: 69  GRFAEVRHAVPMLSLSNAFSDEEVADFVRRID---ERLGRRSLQFSAEPKMDGLAISLRY 125

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALN 202
           E+G FV  A RGDG +GEDV+A +R I  IP+ L+  + P+++EVRGEVY+++ DF A N
Sbjct: 126 EEGHFVLGATRGDGSTGEDVTANLREIGDIPKRLNGKDWPDVLEVRGEVYMARADFEAYN 185

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQK 260
           +     G K  ANPRNAA+G LR+L+P     R L+FF +G G+             L +
Sbjct: 186 ERARLQGGKVLANPRNAAAGSLRQLDPKISAQRKLSFFAYGTGEVQGGELPDTHSGTLAQ 245

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +   GFPV+   R  +   G++ YY ++   R  LP+DIDG+VYK+D+ + Q+ +G  +R
Sbjct: 246 LGSWGFPVSALCRVVDGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSR 305

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL PV + G +++NATLHN D I 
Sbjct: 306 APRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIA 365

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            LD           +RVGD V+V+RAG+VIP+VV +I++ R     P+  P+ CP+C S 
Sbjct: 366 RLD-----------VRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTQCPVCGSE 414

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR-----------------DAFNI 483
           +VR+      +  AA RC+G L+C AQ+ E + HF SR                 DA  +
Sbjct: 415 IVRE------EGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIV 468

Query: 484 EG------LGKQQL---DFFFKSEDPAFS--------------------IRIPADIFTLQ 514
           +G      L + QL        +EDP+                      +++  +    +
Sbjct: 469 KGVADLYRLSRDQLLHLKLVLDAEDPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPGWR 528

Query: 515 RRQQTSTTKIE-NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            +        E N          NL  +I+  R  +LER +F+LGI HVG   A++LA++
Sbjct: 529 AQALVQPASFEWNTKKIATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQW 588

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           +   +        +I H    W    RVP +G  +A+++  F++   N  A++ LL+
Sbjct: 589 FGDLE--------LIRHLP--WPLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQ 635



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 59/101 (58%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           + A E  ++++        + V+  ++ + +V TGTL ++ R  A+E +  LGA VS  +
Sbjct: 721 LLAAEKAMRQILAKAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSV 780

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S+KT  ++ G   GSKL+KAQ LGV + +E++ L  L ++ 
Sbjct: 781 SKKTSFVVAGTEAGSKLDKAQSLGVPVWDEDRLLAYLAEHE 821


>gi|167763098|ref|ZP_02435225.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC
           43183]
 gi|167699438|gb|EDS16017.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC
           43183]
          Length = 665

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 235/708 (33%), Positives = 375/708 (52%), Gaps = 54/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  ++  H+  YY  + P I D E+D   R    +    P+    +D N P  +
Sbjct: 4   KEKIDQLRADLHRHNYNYYVLNAPEISDKEFDDRMRELQELEKEHPEY---QDDNSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136
           +G ++N +  +V H  P LSL   ++  ++  F  R+     KK  N  F    E K DG
Sbjct: 61  VGSDLNKNFTQVAHKYPMLSLGNTYSESEVTDFYDRV-----KKALNEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL  + PE  E+RGE+ +   
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGSYPESFEIRGEILMPWE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L    E+   G Y
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ     GF  +  +++A++   +  Y     + R  LP   DG+V KV+    QK L
Sbjct: 235 ENLQAAAGWGFKTSEHMKKAHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R      G+  AAH C    +C  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIR----YEGE--AAHYCPNETSCPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++      Q +   I+N+   G+ S  N+   I   + +  ER +
Sbjct: 458 YR----LGLIKNTADLY------QLTADDIKNLDRMGEKSAENIIKGIEASKEVPFERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +          N+I    N +   LI +  +G+ IAQ+I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSF----------NDIDELENANLEKLINIDEIGEKIAQSILT 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ NP N C +   LK     + R E+++S    ++  + +V +G      R + +E + 
Sbjct: 558 YFANPLN-CELIERLKSTGLQLYRREEDLSGYTDKLAGQSIVISGVFTHHSRDEYKELIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ G+N G +KLEKA +LG+K+M+E++FL L+
Sbjct: 617 KNGGKNVGSISAKTSFILAGENMGPAKLEKAHKLGIKLMSEDEFLTLI 664


>gi|237799321|ref|ZP_04587782.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022177|gb|EGI02234.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 703

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/626 (35%), Positives = 338/626 (53%), Gaps = 52/626 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137
            +  +V H +P LSL   +   DLR+F  R+             +   + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P ++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPGVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + VG K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L  ++  G PV+  ++ A+     ++YY ++   R TL Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLNALKKWGMPVSRELKLADGVEECLAYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSF 433
           N D +  L            + +GD V+++RAG+VIP+VV  +V ER PD A+P   P  
Sbjct: 367 NMDEVARL-----------GVMIGDTVIIRRAGDVIPQVVQ-VVAERRPDTARPVEVPQT 414

Query: 434 CPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           CP+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +I GLG
Sbjct: 415 CPVCGSHVERTQLIKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIGGLG 474

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  +I   R 
Sbjct: 475 DKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAITDSRQ 524

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P VG  
Sbjct: 525 PTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLE 574

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS 633
           +A  I  F+++  N   ++ALL E  
Sbjct: 575 VAYEIHSFFEDEHNRNVIDALLGECG 600


>gi|313884866|ref|ZP_07818618.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619557|gb|EFR30994.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8]
          Length = 673

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 234/716 (32%), Positives = 382/716 (53%), Gaps = 71/716 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E    +   L+++++     YY   KP   D+ YD + R+ + +    PD      P+ P
Sbjct: 6   EMTLDDYQDLKEQLNQLAYAYYVLDKPQAEDAVYDQMYRQLENLEKIHPDWL---SPDSP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +IG ++     KVTH  P  SL   ++ E++  FI R+    Q +    + F  E KI
Sbjct: 63  TQRIGDQVLAGFEKVTHLEPLYSLANAFSEEEVVAFIDRV----QNQVSGPLTFMCECKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++RYE G FV  A RGDG  GE++++ +R I  +P  L L  P   E RGE Y+ 
Sbjct: 119 DGLSISLRYEDGLFVQGATRGDGRVGENITSNLRTIKALP--LRLQKPVSGEFRGEAYMP 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           K  F  LN+     G  P+ANPRNAA+G LR++NP +   R LN F++G     +     
Sbjct: 177 KAVFQKLNESRDLAGLAPFANPRNAAAGGLRQINPKEAAKRQLNIFMYGAVYNEDYQIDS 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q ++   ++ LG   N   R  +    I++Y  E+   R+ LPY+IDG+V KV++ + Q 
Sbjct: 237 QAQLFDFLQELGLRTNPLRRLCHNKEEIMAYIQEVGQKRADLPYEIDGVVIKVNQVAQQS 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   ++PRW I++KF  +  +TRL +++  +GRTG++TP A ++PV + G  +  A+L
Sbjct: 297 SLGYTVKAPRWAIAYKFKAQVEATRLKEVEWTVGRTGVVTPTAVMDPVFLAGTTVQRASL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D IK L           D+R+GD+V++ +AG++IP+++++ +++R  D+ P   P  
Sbjct: 357 HNIDLIKAL-----------DVRIGDQVVIHKAGDIIPEIIEVNLDQRPADSTPLVIPET 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C   + R+     G++  A RC   L C AQ+L ++ HF SR A NI GLG++ +  
Sbjct: 406 CPVCYHPLERE----AGEV--ALRCLNPL-CPAQRLAQISHFGSRGAMNISGLGEKVVAA 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               +     I+  AD++ L      +   +  +    + S   L  +I   +  SLER 
Sbjct: 459 LLDHD----MIQNVADLYHL------TLADLLKLPNTKEKSAQKLLQAIEASKTNSLERL 508

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQ----EINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +F  GIRHVGA+ AR +A+ + + +  +Q    EI NI                +G IIA
Sbjct: 509 LFGFGIRHVGAKAARLVAQKFDTIEALSQASEEEITNIDG--------------IGTIIA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE----------NKKLVFTGTLQ 659
           +++V+F Q+     A  AL+++++ ++G +      ++           +K +V TGT+ 
Sbjct: 555 KSLVDFLQDE----ASHALIQDLT-NMGVNMTYTGPKVNQTSLDNDFWLDKTVVLTGTMA 609

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
              R +A+E +  LGA V   +S+ TD ++ G + GSKL KA+QLGV I++E +FL
Sbjct: 610 SYSRSQAKEILQGLGAKVIGSVSKNTDYLVAGQDAGSKLSKAEQLGVTILDESEFL 665


>gi|117926963|ref|YP_867580.1| Fis family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|166215818|sp|A0LDY1|DNLJ_MAGSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117610719|gb|ABK46174.1| transcriptional regulator, Fis family [Magnetococcus sp. MC-1]
          Length = 768

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 226/613 (36%), Positives = 336/613 (54%), Gaps = 47/613 (7%)

Query: 111 ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170
           I R  R W  +    + +  EPK+DG   ++ Y +G  V AA RGDG  GEDV+A  R I
Sbjct: 170 ILRRLRLWAAEQPQRVEYVAEPKLDGLAFSLTYAEGVLVRAATRGDGQEGEDVTAHARTI 229

Query: 171 PTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229
             +P R+     P ++EVRGEVY+    F  LN E    G K +ANPRNAA+G LR+L+P
Sbjct: 230 QDVPLRLQGAGYPALLEVRGEVYMPLATFEKLNAEARERGEKTFANPRNAAAGSLRQLDP 289

Query: 230 T-DITRYLNFFVHGLGKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287
               +R L  F +G G         +Y E+L  ++  G  V+    +     G ++Y   
Sbjct: 290 KITASRGLRMFCYGTGYVEGGTLADRYAEILAALKGWGLRVSPEAERVEGAQGCLAYTER 349

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
           +   R TLPY+IDG V KVD   L+++LG  AR+PRW ++ KF   + ST +  ID+Q+G
Sbjct: 350 LGEKRETLPYEIDGAVLKVDSQRLRERLGFVARAPRWAMAFKFPATEESTTVQAIDLQVG 409

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG++TPVARLEPV +GG  +TNATLHN  ++       ++ R  +D+RVGDRV+V+RAG
Sbjct: 410 RTGVITPVARLEPVAVGGVTVTNATLHN--FL-------ELAR--KDVRVGDRVIVRRAG 458

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           +VIP+VV +I  E H     +  P  CP+C +   R+          A RC+GGL C AQ
Sbjct: 459 DVIPEVVRVIPRESHGALAVYKEPVACPVCGAPTEREGGET------ALRCSGGLTCRAQ 512

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
             E +KHF SR A NIEGLG + +    ++       RI +D++ L  ++Q     +  +
Sbjct: 513 VKEGVKHFASRKAMNIEGLGDKLVALLMQA---GLVERI-SDLYRLHEQRQV----LVGL 564

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
              G  SV NL ++I + +  S  RF+F LGIR VG  +A SLA ++ S       ++ +
Sbjct: 565 ERLGGKSVANLLEAIEQSKAQSAARFLFGLGIRDVGVTLAGSLAAHFTS-------LDAL 617

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKN-- 642
           +A   +D   L+ +  VG+++A+ +V F+    +   + A+ AL    +    R E +  
Sbjct: 618 MAATVED---LVGIEDVGEVVARRVVHFFAQAHHGAELAALRALGVAAAGEPWRVEPDGH 674

Query: 643 ----VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                   +    +V TGTL  + R  A   +  LGA V A +S KT  ++ G++ GSKL
Sbjct: 675 GVAAAEQPLSGLSVVLTGTLAGLTREAAAVRLEGLGAKVVASVSGKTGCLVCGESAGSKL 734

Query: 699 EKAQQLGVKIMNE 711
            KAQ+ GV +++E
Sbjct: 735 AKAQKAGVPVLDE 747



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L + ++++   Y+     ++ D+EYD L R   ++  A P L  ++ P    +++GG 
Sbjct: 7   AELRKRLNHYAHSYHTLDTSLVSDAEYDRLFRELQSLEAADPTLISADSPT---HRVGGA 63

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114
           +     KV H +  LSL+  ++ +DL +F  R+
Sbjct: 64  ILEGFEKVRHRVAMLSLDNAFSAQDLVEFHRRV 96


>gi|218248171|ref|YP_002373542.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 8801]
 gi|254781307|sp|B7K0A2|DNLJ_CYAP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218168649|gb|ACK67386.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8801]
          Length = 674

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/697 (32%), Positives = 371/697 (53%), Gaps = 61/697 (8%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    PI+ DS YD L R    +   +P L     P+ P  ++G +       + H+I
Sbjct: 25  AYYVLDNPIMEDSVYDQLYRELQDLESQYPILI---TPDSPTQRVGDQPAAQFNSIRHNI 81

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P  SLE  +N+++L+K+  R  R+ Q  + +   +  E KIDG+ + + YE G  +    
Sbjct: 82  PLYSLENAFNLQELQKWEERWQRYDQVSNSD---YVCELKIDGSALALTYEDGILIRGVT 138

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDG +GE+++  +R I +IP  L+L N P  +E+RGE ++  N+F  LN E    G   
Sbjct: 139 RGDGITGEEITQNVRTIRSIPLKLTLENPPSRVEIRGEAFLPLNEFDRLNGERKQAGEPL 198

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   ++ R L FF + L    +     Q+E L+ ++ +GF VN  
Sbjct: 199 FANPRNAAAGTLRQLDSKVVSERRLQFFAYTLHLPEDNSLSSQWESLEWLKKMGFLVNPN 258

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            +   T   +  Y+   ++ R  LPY  DG+V K+++++LQ QLG   + PRW I+ K+ 
Sbjct: 259 CQLCPTLEAVADYFRHWETARHDLPYMTDGVVVKINDYALQNQLGFTQKFPRWAIALKYP 318

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++A TR+ +I + +GRTG +TP+A +EPV++GG ++  ATLHN D +  L         
Sbjct: 319 AEEAPTRVKEIIVNVGRTGAVTPMAIMEPVHLGGTIVQRATLHNSDRVSEL--------- 369

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             DIRVGD V++++AGE+IP+V+ ++   R P+++P+  PS CP C S +VR +      
Sbjct: 370 --DIRVGDTVIIRKAGEIIPEVLRVLPELRLPNSRPYQMPSHCPECGSTLVRPVGE---- 423

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC    +C A     + H+ SRDA +I GLG++ +    ++E     I   AD++
Sbjct: 424 --AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKIVSLLVENE----LITSIADLY 476

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
                 Q +  K+  +   G  S   L ++I   +  S  R ++ LGIR+VG   A+ L 
Sbjct: 477 ------QLTPEKVAALDRMGTKSAQKLINAIEGSKRQSWPRVLYGLGIRYVGNVTAKLLT 530

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             + S +  +Q     +A           V  VG+ IAQ++ ++++   N   +E L   
Sbjct: 531 DNFPSVEVLSQASVPTLAS----------VYGVGEEIAQSVFDWFKIVENQTLIEQL--- 577

Query: 632 VSPSIGRHEKNVSSE----------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
                G   +N++S+          I  K  V TGTL  ++R++A+  + + G  V+  +
Sbjct: 578 --KIAGLQLENIASQAVSLTPSSGNIAGKTFVLTGTLPTLKRNEAKALIEKAGGKVTGSI 635

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S KTD ++VG+  GSKL KAQ+LG+  ++E   L  L
Sbjct: 636 SSKTDYLVVGEEAGSKLAKAQELGITQLSEADLLKFL 672


>gi|330973309|gb|EGH73375.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 670

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/623 (34%), Positives = 338/623 (54%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+             +   + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGGKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P+++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+    P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L ++I   R  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLNAIADSRQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +          +P VG  +
Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AYEIHSFFEDEHNRSVIDALLGE 598


>gi|325681379|ref|ZP_08160905.1| DNA ligase (NAD+) [Ruminococcus albus 8]
 gi|324106869|gb|EGC01159.1| DNA ligase (NAD+) [Ruminococcus albus 8]
          Length = 665

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/712 (31%), Positives = 379/712 (53%), Gaps = 52/712 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE    + A+K +  L   ++YH   YY   +  I D +YD ++     +   +P+  R 
Sbjct: 5   IEMADKDNAKKRIDELVATLNYHAHLYYVEDRNEISDYDYDMMQNELKKLEAQYPEFIR- 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  ++GG+      KV H +   SL+ +++ E +R+F+ R+    +  DD    F
Sbjct: 64  --PDSPTQRVGGKAVSRFEKVQHKVQMGSLQDVFSFEGVREFVDRV---RETVDDPK--F 116

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +EPKIDG  +++ Y  G+    + RGDG  GE+V+  +R + +IP  +   +P ++EVR
Sbjct: 117 VVEPKIDGLSVSLEYHDGQLTVGSTRGDGFVGENVTENLRTVRSIPVSIDSTLP-MLEVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ ++ FL L  E      +P+ NPRNAA+G LR+ NP     R L+ FV  + +  
Sbjct: 176 GEVYMPRSVFLKLVKEQEDNDEQPFKNPRNAAAGSLRQKNPKIAAKRKLDIFVFNVQQVE 235

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   + L  ++ LGF      R  +T   I++   E+   R  LPYDIDG+V KVD
Sbjct: 236 GKELTAHKQSLDYLKELGFKTVPDYRLVSTADEIIARIGEIGESRFELPYDIDGVVIKVD 295

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +FS ++++G  A+ P+W +++KF  ++ +T+LLDI++ +GRTG +TPVA  EPV + G  
Sbjct: 296 DFSQRERIGSTAKDPKWAVAYKFPPEEKNTKLLDIELNVGRTGAVTPVAIFEPVFLAGTQ 355

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN+D I             ++I +GD + V++AG++IP+V+ ++  E++ D   
Sbjct: 356 VSRATLHNQDLIN-----------EKNINIGDIIKVRKAGDIIPEVLGVV--EKNSDG-A 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F+ P  CP+C+++++R          AA RC   + C AQ    + HF S+ A NI+GLG
Sbjct: 402 FTLPDECPVCKTKLIRSEEE------AAVRCP-NVECPAQIFRSIVHFASKGAMNIDGLG 454

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            Q +       D      + AD++ +      +  K+  +  F + S  NL  +I K ++
Sbjct: 455 PQIVRVLL---DKGLITSV-ADLYHI------TEEKLLELDNFKEKSAHNLVTAIEKSKS 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL+R IF LGIR +G   A+ L   +    +  +     IA           +   GDI
Sbjct: 505 NSLDRLIFGLGIRGIGQASAKLLCAKFGGIDSIMRATAAEIAE----------IEGFGDI 554

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A ++   +     +  ++  LK+   +    +       E K  V TGTL  ++R++A+
Sbjct: 555 MADSVYSAFHEEHMLSLIQR-LKDCGVNTDYEKVQQDDRFEGKTFVLTGTLPTLKRNEAK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E + + G   S  +S+KTD ++ G+  GSKL KA+QLG+KI+ EE+F+ +++
Sbjct: 614 ELIEKFGGKASGSVSKKTDYVLAGEEAGSKLTKAEQLGIKIITEEEFMEMIK 665


>gi|302185110|ref|ZP_07261783.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           642]
          Length = 787

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/623 (34%), Positives = 338/623 (54%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAQLDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+             + + + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     PE++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPEVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSADIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLETLKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+    P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENAKAVHVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  +I   R  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +          +P VG  +
Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  + +       +  II+    DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQT--LPE 663

Query: 607 IIAQAIVEFYQN---PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+ +        A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDSVHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 720 ERMSRDIAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779

Query: 719 QQYNTTL 725
            +    +
Sbjct: 780 TELGVAV 786


>gi|257060505|ref|YP_003138393.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802]
 gi|256590671|gb|ACV01558.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802]
          Length = 674

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/693 (32%), Positives = 369/693 (53%), Gaps = 53/693 (7%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    PI+ DS YD L R    +   +P L     P+ P  ++G +       + H+I
Sbjct: 25  AYYVLDNPIMEDSVYDQLYRELQDLESQYPILI---TPDSPTQRVGDQPAAQFNSIRHNI 81

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P  SLE  +N+++L+K+  R  R+ Q  + +   +  E KIDG+ + + YE G  +    
Sbjct: 82  PLYSLENAFNLQELQKWEERWQRYDQVSNSD---YVCELKIDGSALALTYENGILIRGVT 138

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDG +GE+++  +R I +IP  L+L N P  +E+RGE ++  N+F  LN E    G   
Sbjct: 139 RGDGITGEEITQNVRTIRSIPLKLTLENPPSRVEIRGEAFLPLNEFDRLNGERKQAGEPL 198

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   ++ R L FF + L    +     Q+E L+ ++ +GF VN  
Sbjct: 199 FANPRNAAAGTLRQLDSKVVSERRLQFFAYTLHLPEDNSLSSQWESLEWLKKMGFLVNPN 258

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            +   T   +  Y+   ++ R  LPY  DG+V K+++++LQ QLG   + PRW I+ K+ 
Sbjct: 259 CQLCPTLEAVADYFCHWETTRHDLPYMTDGVVVKINDYALQNQLGFTQKFPRWAIALKYP 318

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++A TR+ +I + +GRTG +TP+A +EPV++GG ++  ATLHN D +  L         
Sbjct: 319 AEEAPTRVKEIIVNVGRTGAVTPMAIMEPVHLGGTIVQRATLHNRDRVSEL--------- 369

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             DIRVGD V++++AGE+IP+V+ ++   R P++QP+  PS CP C S +VR +      
Sbjct: 370 --DIRVGDTVIIRKAGEIIPEVLRVLPELRLPNSQPYQMPSHCPECGSTLVRPVGE---- 423

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC    +C A     + H+ SRDA +I GLG++ +    ++            I 
Sbjct: 424 --AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKIVSLLVEN----------GLIT 470

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           ++    Q +  K+  +   G  S   L ++I   ++ S  R ++ LGIR+VG   A+ L 
Sbjct: 471 SITDLYQLTPEKVAALDRMGTKSAQKLINAIEGSKHQSWSRVLYGLGIRYVGNVTAKLLT 530

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL--- 628
             + S +  +Q     +A           V  VG+ IAQ++ ++++   N   +E L   
Sbjct: 531 DNFPSVEVLSQASVPTLAS----------VYGVGEEIAQSVFDWFKIAENQTLIEQLKIA 580

Query: 629 ---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
              L+ ++ S        S ++  K  V TGTL  ++R++A+  + + G  V+  +S KT
Sbjct: 581 GLQLENIA-SQAVSLTAASEKVAGKTFVLTGTLPTLKRNEAKALIEKAGGKVTGSISSKT 639

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           D ++VG+  GSKL KAQ+LG+  ++E   L  L
Sbjct: 640 DYLVVGEEAGSKLAKAQELGITQLSEADLLKFL 672


>gi|305667253|ref|YP_003863540.1| DNA ligase [Maribacter sp. HTCC2170]
 gi|88708187|gb|EAR00425.1| DNA ligase [Maribacter sp. HTCC2170]
          Length = 664

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 235/707 (33%), Positives = 373/707 (52%), Gaps = 52/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+++ +L  E+  H+  YY    P I D ++D   +    +    P+     D   P  +
Sbjct: 4   RQKIEALRAELREHNHNYYVLDNPTISDYDFDMKLKELQELEAKHPEFY---DATSPTLR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++  +   + H     SL+  ++ EDL  +  RI R      D  + FT E K DG 
Sbjct: 61  VGGDITKNFNTIVHEHRMYSLDNSYSKEDLEDWEKRIQRIL---GDAEVEFTCELKYDGA 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE GK   A  RGDG  G++V+A I+ I ++P  L  + P   ++RGE+ +  + 
Sbjct: 118 SISLTYEDGKLSKAVTRGDGFQGDEVTANIKTIRSVPLQLKGDYPPKFDIRGEIILPLDG 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-GKTSEIFAKGQY 255
           F  +N E +A G  PY NPRN ASG L+  +   +  R L+  ++G+ G  + I +  QY
Sbjct: 178 FEKMNQERVAAGEDPYMNPRNTASGSLKLQDSAAVAQRPLDCLLYGIVGPNTGITS--QY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           EML+K R  GF V +  +   T   ++++       R  LPY+ DG+V KV+    Q +L
Sbjct: 236 EMLEKSRDWGFKVPSIAQLCKTIDEVMAFVEYWDVHRHDLPYETDGVVIKVNSLQHQDEL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  ++SPRW +++KF  +Q ST L +I  Q+GRTG +TPVA LEPV + G  +  A+LHN
Sbjct: 296 GYTSKSPRWAMAYKFKAEQVSTVLNEITYQVGRTGAITPVANLEPVLLAGTTVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           DIR  D V V++ GE+IPK++ + + +R  D++P  + + CP
Sbjct: 356 ADQIEKL-----------DIRERDTVFVEKGGEIIPKIIGVDIPKRPADSEPIKYITLCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C++ +VR          A H CT    C  Q   R++HF+SR A +IEGLG + ++  F
Sbjct: 405 ECETELVRTEGD------AKHYCTNFYGCPTQITGRIQHFISRKAMDIEGLGGETVELLF 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K       IR  AD++ L + Q      I  +    + S  NL   +     I  ER +F
Sbjct: 459 KEG----LIRNYADLYILTKEQ------IMPLERMAEKSAENLVKGVADSTTIPFERVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ LAK Y       + I+ ++A ++++   LI V  +G+ IAQ++VEF
Sbjct: 509 ALGIRFVGETVAKKLAKAY-------KNIDALMAASSEE---LIAVDEIGERIAQSVVEF 558

Query: 616 YQNPRNICAVEALLKE--VSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +QN RN+  + A LK   V   I   +    +EI + K  V +G  + I R+  ++ +  
Sbjct: 559 FQNERNLDNI-ARLKSYGVQFEISADKLLNQTEILKGKTFVVSGVFETISRNDLKKLIED 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G  V + +S KT  ++ GD  G SK  KA++L + I+ E+ FL ++
Sbjct: 618 NGGKVGSSISSKTSFLVAGDKMGPSKRTKAEKLDIPIITEQDFLNMV 664


>gi|186680717|ref|YP_001863913.1| NAD-dependent DNA ligase LigA [Nostoc punctiforme PCC 73102]
 gi|254781381|sp|B2J3P0|DNLJ_NOSP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|186463169|gb|ACC78970.1| DNA ligase, NAD-dependent [Nostoc punctiforme PCC 73102]
          Length = 678

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 239/713 (33%), Positives = 379/713 (53%), Gaps = 57/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL  L Q+ SY    YY    PI+ DS YD L R    +   +P+L     P+ P  ++
Sbjct: 12  EELRQLLQQASY---AYYVLDTPIMEDSVYDQLYRELQQLEIQYPELTA---PDSPTQRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G         V H+IP  SLE  +NI++L+ +  R  R   K D  S+ +  E KIDG+ 
Sbjct: 66  GERPATQFTSVRHNIPLYSLENAFNIDELQGWDQRWRRQVPKID--SVEYVTELKIDGSA 123

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISK 195
           + + Y+ G  V    RGDG  GED++  +R I +IP  L+   L I E +EVRGE ++  
Sbjct: 124 LALTYQDGILVRGTTRGDGVMGEDITQNVRTIRSIPLRLNFEGLEILERVEVRGEAFLPL 183

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF---VHGLGKTSEIFA 251
             F  +N+E    G + +ANPRNAA+G LR+L+   +  R L FF   +H  G+     A
Sbjct: 184 EVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVAKRRLAFFGYTLHIPGRDDTSIA 243

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q+E L+ +  +GF VN   +   +   +  YY    + R  LPY  DG+V K++ F L
Sbjct: 244 NTQWEALELLEKMGFQVNPNHKLCASIAEVAKYYEYWDTERLNLPYMTDGVVVKLNSFKL 303

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG   + PRW I+ K+  ++A TR+ +I + +GRTG LTP+A + PV + G  ++ A
Sbjct: 304 QEQLGFTQKFPRWAIALKYPAEEAPTRVENIAVNVGRTGALTPLAEMRPVQLAGTTVSRA 363

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           DIR+GD V+V++AGE+IP+VV ++   R  + +PF  P
Sbjct: 364 TLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVLKELRPAETEPFVMP 412

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C   VVR+    +G+  A  RC    +C+A     ++H+VSRDA +I+GLG++ +
Sbjct: 413 THCPVCDQAVVRE----SGE--AVTRCVNA-SCAAILKGSIEHWVSRDALDIKGLGEKLV 465

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       +   AD++ L      +  K+  +   G  S   L D+I + +N    
Sbjct: 466 HQLVDK----VLVHSVADLYEL------TAEKLCALERMGQKSAEKLVDAIAQSKNQPWS 515

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRHVG+  A+ L + Y + +  A       A  +D    +  +  +G  IAQ+
Sbjct: 516 RVLYGLGIRHVGSVNAQLLTQKYFTVEQLA------TAKQSD----IEGIYGIGAEIAQS 565

Query: 612 IVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           + ++++   N   +E L    L+  +P   +   + +     K  V TGTL  ++R +A+
Sbjct: 566 VYQWFRIDANQRLIERLQAEGLQLTAPEETKAFGDGNQIFAGKTFVVTGTLPTLKRDEAK 625

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + + G  V+  +S+KTD ++VG++ GSKLEKA  LG+  ++E Q L +L +
Sbjct: 626 ALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLEKALSLGITQLSEAQLLEMLNE 678


>gi|262203140|ref|YP_003274348.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247]
 gi|262086487|gb|ACY22455.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247]
          Length = 691

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 235/711 (33%), Positives = 368/711 (51%), Gaps = 50/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++ S+L  EI  H   YY    P+I D E+DAL RR   +  A P+LA    P+ P   
Sbjct: 15  REQWSTLADEIREHQFRYYVKDSPVITDGEFDALLRRLQDLEDAHPELAA---PDSPTKL 71

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG  + +   V H    +SL+ +++ +++R ++ R+          S+ F  E KIDG 
Sbjct: 72  VGGGFSTAFTPVDHLERMMSLDNVFDYDEMRTWVERV----NADAGTSVEFLCELKIDGV 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            + + YEKG  V    RGDG +GEDV+   R I  +P+ L+ +    IP+++EVRGEV+ 
Sbjct: 128 ALALVYEKGVLVRGVTRGDGRTGEDVTLNARTIDDVPQRLTASDEYPIPDVLEVRGEVFF 187

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251
              DF ALN  ++A G+ P+ANPRN+A+G LR+ NP  IT  R L    HG+G T     
Sbjct: 188 RVEDFEALNASLVADGKAPFANPRNSAAGSLRQKNPQ-ITARRRLRMICHGIGHTEGWRP 246

Query: 252 KGQYEMLQKMRCLGFPVNN---GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              ++    +   G PV+     V  A+     + Y+ E    R  + ++IDG+V K D+
Sbjct: 247 ASLHDAYLALGAWGLPVSTHTTKVPGADEILEKIGYWGEH---RHDVEHEIDGIVVKADD 303

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            S+Q++LG  +R+PRW I++K+  ++A+T LLDI + +GRTG +TP A L PV + G+ +
Sbjct: 304 VSVQRRLGATSRAPRWAIAYKYPPEEATTELLDIQVGVGRTGRVTPFAVLAPVLVAGSTV 363

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHNE  +K         R G  + +GD V +++AG+VIP+V+  +V+ R    + F
Sbjct: 364 SRATLHNESEVK---------RKG--VLIGDTVTIRKAGDVIPEVLGPVVDLRDGTERAF 412

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C +     L P+    V   RC     C AQ  ERL H   R +F+IE LG 
Sbjct: 413 VMPDRCPECGA----PLRPEKDSDVDI-RCPNQETCPAQLRERLFHLAGRGSFDIEALGY 467

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +       ++     I    D+F+L       T       G    +   L  ++   + +
Sbjct: 468 EAATALLNAK----VITNEGDLFSLTADDLARTDLFTTKAGALSANGKRLLANLENAKQV 523

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R +  L IRHVG   AR+L          A E  ++ A  + D   L  V  +G  +
Sbjct: 524 PLWRVLVGLSIRHVGPTAARAL----------ATEFGSLNAIEDADVEQLAGVEGLGMTL 573

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           AQ+I +++    +   VE             + ++   +E K +V TG+L+   R  A+E
Sbjct: 574 AQSIHDWFAVDWHREIVEKWRAAGVSMEDERDDSIVRTLEGKTIVVTGSLEDFSRDGAKE 633

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + Q G   S  +S+KTD +++G++PGSK  KA+QLGV +++E+ F  LL+
Sbjct: 634 AILQRGGKASGSVSKKTDYVVIGESPGSKAAKAEQLGVPVLDEDAFKRLLE 684


>gi|330986172|gb|EGH84275.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 787

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 337/623 (54%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+         +       + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEESDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P+++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV++ ++ AN     + YY ++   R TL Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLETLKKWGMPVSHELKLANGVEDCLDYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+    P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  +I   R  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P VG  +
Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  + +       +  II+    DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQT--LPE 663

Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+ +  +     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779

Query: 719 QQYNTTL 725
            +   T+
Sbjct: 780 TELGVTV 786


>gi|254882009|ref|ZP_05254719.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA]
 gi|254834802|gb|EET15111.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA]
          Length = 665

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 242/710 (34%), Positives = 372/710 (52%), Gaps = 62/710 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++G 
Sbjct: 7   IDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRVGS 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139
           ++N +  +V H  P LSL   ++  ++ +F  R+     KK  N  F    E K DGT I
Sbjct: 64  DINKNFTQVVHKYPMLSLANTYSETEVTEFYDRV-----KKSLNEDFEICCEMKYDGTSI 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    F
Sbjct: 119 SLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPETFEIRGEILMPWVVF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L     +   G YE 
Sbjct: 179 EELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+P+ + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+GL           D+ +GD V V++ GE+IPK+V +  + R        F + CP C
Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR      G+  AA+ CT   AC  Q   +++HF+SR A NI+GLG + +D F++ 
Sbjct: 407 GSKLVR----YEGE--AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD++TL+      T+ I N+   G+ S  N+   I + + +  ER +F+L
Sbjct: 461 G----LIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           GIR VG  +A+ +AK + S    A   ++N           LI V  +G+ IAQ+I+ ++
Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADASLDN-----------LIHVDEIGEKIAQSILLYF 559

Query: 617 QNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            NP+N   +E L      L+        H   ++ E     +V +G      R + +E +
Sbjct: 560 ANPKNRDIIERLRVAGVRLEADEEDTSEHTDKLAGE----SIVISGVFAHHSRDEYKELI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G      +S KT  I+ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 616 EKHGGKNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|309378943|emb|CBX22396.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 827

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 267/839 (31%), Positives = 414/839 (49%), Gaps = 170/839 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P + D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 18  ELTDLLNRYAYE---YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVG 71

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F ++     +     + +EPK
Sbjct: 72  GEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRNGLNGEQPEYVIEPK 131

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV 
Sbjct: 132 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 191

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K DF ALN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F
Sbjct: 192 MLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGF 250

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + +G      F  I   +++Y +M+  R  LPY+IDG+V KV
Sbjct: 251 VAEAHIQELAYFQELGFSLPDG--NFGCFKNIGEVLAFYGQMQQKRPELPYEIDGMVVKV 308

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 309 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 368

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+R+GD V+V+RAG+VIP+VV +I   R     
Sbjct: 369 TVTNATLHNQD---------EVSR--KDVRIGDTVVVRRAGDVIPEVVRVIFERRPMQET 417

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 418 AVAVSDGIGHRQDDLFAETPSAGQTRSVPLHKPYRLPTRCPICRSEIERE----EGEAVA 473

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 474 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLD 527

Query: 512 --TLQRRQQTS-TTKIENILGFGDVS---------------VTNLYDSINKRRNISLERF 553
             TLQ+ ++T+  T  E+     +VS                 N+   I   +   L RF
Sbjct: 528 IPTLQKMKETADKTVAESEQMPSEVSSVGASGKHKKQPVKWAENILGGIESGKTPELARF 587

Query: 554 IFSLGIRH--------------------------------VGAEIARSLAKYYLSYQNFA 581
           +F+LGIRH                                +G  +A S+A ++   +  A
Sbjct: 588 LFALGIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVAHSIAHFFAQAEQQA 647

Query: 582 --------------QEINNIIAHNNDDWLSLIRVP--LVGDIIAQAIVEF---------- 615
                         Q ++  +A   +    + R+P   + +  AQA+ E           
Sbjct: 648 MIDELLAAGVAPQAQAVSLPVAQYAEPQRWIARLPGFKISENKAQALWELAGQSIKGLQN 707

Query: 616 -------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQ 659
                  +Q  R+      LL+ +       PS     +    ++  +  K  V TGTL 
Sbjct: 708 DKALPADWQAWRSETQNAVLLENLKTFFAQMPSEDETAQGSDGINEAVAGKTFVLTGTLP 767

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 768 TLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 826


>gi|295426520|ref|ZP_06819170.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM
           11664]
 gi|295063888|gb|EFG54846.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM
           11664]
          Length = 669

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 232/715 (32%), Positives = 391/715 (54%), Gaps = 68/715 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++++QA+ E+++L +++    + YY    P + D+ YD    R   +   FP+L     P
Sbjct: 4   ITLDQAKTEVAALRKQLDEWAEAYYSKDAPEVEDNVYDQKYNRLLELEKDFPELVT---P 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG+++    KV H IP LS+  +++ E+LR+F  RI    QK+  + + + +E
Sbjct: 61  DSITQRVGGKIDTKFTKVAHPIPMLSMGDVFSKEELREFDQRI----QKQVGHPVAYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y+ G+ + A+ RG+G  GEDV+A  R I  IP+  +L  P  IEVRGE 
Sbjct: 117 LKIDGLSLSLEYQNGRLMRASTRGNGQVGEDVTANARFIRDIPQ--TLPKPLTIEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+SK  F  LN E    G++ +ANPRNAA+G LR+L+   +T  R L+ F++      E 
Sbjct: 175 YMSKEAFAKLNAERDENGKEVFANPRNAAAGSLRQLD-AKVTKKRDLSTFIYTWVNPPEG 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ +++M  LGF  N   R+  T   I  + +E  + R +LPY IDG+V KVD+ 
Sbjct: 234 IT-SQHQAIEEMHKLGFHTNQTGRKLETLDEIFDFIDEYTAKRDSLPYCIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            ++++LG   + PRW I++KF  ++  T + DI+  +GRTG++TP A ++PV + G  + 
Sbjct: 293 GIEQELGSTVKVPRWEIAYKFPPEEQETVVRDIEWTVGRTGVVTPTAVMDPVQLAGTTVA 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A LHN D +K            +D+R+GD V + +AG++IP++ ++++++R  D++P+ 
Sbjct: 353 RAVLHNPDLLK-----------EKDVRIGDTVKLHKAGDIIPEISEVVLSKRPADSKPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C  ++V        K   A RC    +C AQ  E + HF SR A NI GLG +
Sbjct: 402 IPTTCPSCGQKLVH------LKGEVALRCINP-SCPAQLEEGIIHFASRQAMNIAGLGPK 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I+K +  S
Sbjct: 455 IVKQLI-AKDLVHNV---ADLYHL------TPDDLMQLDHFKEKSINNLLTAIDKSKQNS 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E  +  LGI HVGA++AR +          +Q+  N+      D   +  +  +G  IA
Sbjct: 505 VELLLTGLGIDHVGAKVARLI----------SQKFKNLPKIMAADVQEVAAIDTIGPTIA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEI-----ENKKLVFTGTL 658
           +++  ++  P    AV+ L++E+  S      +G+ E    +EI     +NK +V TG L
Sbjct: 555 ESLTTYFAQP----AVQKLIEELEESGLNMDYLGQDE--TEAEIADNFFKNKTVVLTGKL 608

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
               R +  + +  LGA V+  +S KTD +I G + GSK  KAQ LGV  + EE+
Sbjct: 609 AHYTRSEFTKRLQSLGAKVTGSVSHKTDYVIYGKDAGSKFTKAQSLGVPTLTEEE 663


>gi|308176651|ref|YP_003916057.1| DNA ligase [Arthrobacter arilaitensis Re117]
 gi|307744114|emb|CBT75086.1| DNA ligase [Arthrobacter arilaitensis Re117]
          Length = 767

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 241/767 (31%), Positives = 391/767 (50%), Gaps = 72/767 (9%)

Query: 1   MKKRQLIPIEALSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + ++ + P+E  ++  E  +     L ++I  H D YYQ   P++ D EYDAL      +
Sbjct: 10  VSEKDVAPVETTNVPPEADKTRYDQLVEQIRAHRDAYYQNDAPLVSDVEYDALFHELQLL 69

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
              +P LA  + P     ++GGE++ +   VTH+    SLE ++++++L  ++ R     
Sbjct: 70  EATYPILAGQDSPT---QEVGGEVSAAFASVTHASRMYSLEDVFSLDELEAWLERAQANA 126

Query: 119 QK-KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
           ++      + +  E KIDG  + + Y  GK V AA RGDG +GEDV+     I  IP+ L
Sbjct: 127 ERLHPQTPVRWLCEVKIDGLALNLTYRDGKLVRAATRGDGTTGEDVTHNALTISDIPQQL 186

Query: 178 -SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
                P   EVRGEV+I+  DF   N+ +IA G+ P ANPRNAA+G LR+ +P     R 
Sbjct: 187 EGSGWPAEFEVRGEVFIATEDFNKFNEALIAQGKAPLANPRNAAAGSLRQKDPAQTAKRP 246

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L  FVHGLG++ +     Q +  + MR  G PV+   R  ++      Y  E    R  L
Sbjct: 247 LRMFVHGLGRSRDFKLTEQSQAYELMRGWGLPVSPYGRVVDSRQAAKDYIAEHGEKRHDL 306

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            +DIDG+V KVD+ + Q+QLG  +R PRW +++K+  ++  T+LLDI +Q+GRTG +TP 
Sbjct: 307 IHDIDGIVIKVDDLATQEQLGYTSRVPRWAVAYKYPPEEVHTKLLDIQVQVGRTGRVTPF 366

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
             +EPV + G+ +  ATLHN++ +K            +++++GD +++++AG+VIP++V 
Sbjct: 367 GVMEPVLVAGSTVARATLHNQEVVK-----------AKNVKIGDTIILRKAGDVIPEIVG 415

Query: 416 II--VNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERL 472
            +  + E + + + F  P+ CP C     + L P K G +    RC    +C AQ  ER+
Sbjct: 416 PVLPLREGNDELRDFIMPTECPSCG----QPLAPAKEGDVDI--RCLNAESCPAQLTERV 469

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFK--SEDPAF--SIRIP---------ADIFTL------ 513
            +   R A +IE LG +          EDPA    I +P         A++F L      
Sbjct: 470 AYLGGRSALDIEALGYEAAAALTSGPGEDPATLGGIILPAGPGPLKNEAELFNLKDKLEE 529

Query: 514 ---------QRRQQTSTTKIENILGF-----------GDVSVTNLYDSINKRRNISLERF 553
                    +R +   T K E +  F              S   L D + K ++  L R 
Sbjct: 530 LGEVKVWREKRVKGEGTGKFELVPYFYSKATAKKPSAPTKSTMKLLDELEKAKDNPLWRV 589

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +L IRHVG   +R++A  Y S     + +++  A        L  +  VG IIA+A+V
Sbjct: 590 LVALSIRHVGPNASRAIATRYGSMDALLEVLDSGNAEAE-----LSEIDSVGSIIAEALV 644

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++++   +   V +            ++N++  +E   +V TGTL+   R  A+E +   
Sbjct: 645 DWFKVDWHREIVASWQAAGVKMQDEQDENITKNLEGLAIVVTGTLENYSRDTAKEAIIVR 704

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G   +  +S+KTD ++ G+  GSKL+KAQ LGV +++E  F  LL+Q
Sbjct: 705 GGKATGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEAGFGVLLEQ 751


>gi|71737941|ref|YP_274013.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123775130|sp|Q48KR2|DNLJ_PSE14 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71558494|gb|AAZ37705.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320329466|gb|EFW85458.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 787

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 337/623 (54%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+         +       + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P+++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV++ ++ AN     + YY ++   R TL Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+    P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  +I   R  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P VG  +
Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  + +       +  II+    DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQT--LPE 663

Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+ +  +     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779

Query: 719 QQYNTTL 725
            +    +
Sbjct: 780 TELGVAV 786


>gi|330444629|ref|YP_004377615.1| DNA ligase [Chlamydophila pecorum E58]
 gi|328807739|gb|AEB41912.1| DNA ligase, NAD-dependent [Chlamydophila pecorum E58]
          Length = 666

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 238/702 (33%), Positives = 384/702 (54%), Gaps = 56/702 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L QE+  HD  YY    P+I D +YD   R    I    P+      P  P  ++G   +
Sbjct: 17  LCQELEKHDYQYYVLHAPLISDYDYDMKMRELQLIEKQHPEW---RVPWSPTLRLGDRPS 73

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
             L  V H  P LS+   ++ E+L +F +R+    +K   +  ++T+E KIDG  + IRY
Sbjct: 74  GELEIVDHKYPMLSIANGYSEEELEEFFSRV----EKSLGHVPYYTIELKIDGIAVAIRY 129

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E    V A  RG+G  GED++  IR I  +P  L    PE +EVRGEV+  +  F  +N 
Sbjct: 130 EDRILVQAMSRGNGKQGEDITTNIRTIRALPLRLPEESPEFLEVRGEVFFKRAVFDEINA 189

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
           +  A+ +  +ANPRNAA G L+ L+   +  R L   ++ +   +E  +    + L+  R
Sbjct: 190 KQRALKKPEFANPRNAAGGTLKLLSAEKVAERKLEISIYSV--LAEELSDSHCDSLECCR 247

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
             G  V    R   +   +  +  E+K +RS LP +IDG+V KVD    Q+ LG   +  
Sbjct: 248 QWGLSVQGMPRLCRSKEEVFVFLEEIKQLRSQLPMEIDGVVIKVDSIKDQQSLGSTGKHY 307

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW +++K+A +QA T L DI +Q+GRTG+LTPVA+L PV + G+LI+ A+L+NE+ I+  
Sbjct: 308 RWALAYKYAPEQAETVLEDILVQVGRTGVLTPVAKLRPVFLSGSLISRASLYNEEEIR-- 365

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     +DIR+GD V++++ GEVIPKVV +++ +R  D+Q +  P  CPIC   VV
Sbjct: 366 ---------RKDIRIGDTVVLEKGGEVIPKVVGVVLGKRPEDSQSWQMPEHCPICHGDVV 416

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           R+ N          RC     CS   +E+++ F  R A +IE LG++ ++  F   D   
Sbjct: 417 REGNK------VCVRCMNP-TCSGGTIEKIRFFAGRSALDIEYLGEKVINKLF---DMGL 466

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            +   +DIF+L +R       +  + GF + SVTN+  SI K +N+ L+RF+ +LGI +V
Sbjct: 467 -LHSCSDIFSLTKRD------LLQVPGFREKSVTNILKSIEKAKNVFLDRFLVALGIPYV 519

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G  +A SLA+++ S       +  +I+ +      L+ +  +GD +A +I E+++NP+++
Sbjct: 520 GIGVASSLAEHFGS-------LERVISASE---EELLEIEGIGDKVAVSIKEYFENPKHL 569

Query: 623 CAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
             +E +L    +V+PS        SS  + K  V TG    I R   +  +   G  VS+
Sbjct: 570 EEIEKMLDFGVKVAPS-----HKSSSICQGKTFVITGAFAGITRSDIERTIRNCGGKVSS 624

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            +S++TD ++VG++PGSKL+KAQ+LG+ +++++    +L  Y
Sbjct: 625 SVSKQTDYLVVGEDPGSKLKKAQELGIPLLDQDSLQKILYNY 666


>gi|313668860|ref|YP_004049144.1| DNA ligase [Neisseria lactamica ST-640]
 gi|313006322|emb|CBN87785.1| putative DNA ligase [Neisseria lactamica 020-06]
          Length = 827

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 267/839 (31%), Positives = 414/839 (49%), Gaps = 170/839 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P + D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 18  ELTDLLNRYAYE---YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVG 71

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F ++     +     + +EPK
Sbjct: 72  GEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRNGLNGEQPEYVIEPK 131

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV 
Sbjct: 132 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 191

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K DF ALN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F
Sbjct: 192 MLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGF 250

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
            A+   + L   + LGF + +G      F  I   +++Y +M+  R  LPY+IDG+V KV
Sbjct: 251 VAEAHIQELAYFQELGFSLPDG--NFGCFKNIGEVLAFYGQMQQKRPELPYEIDGMVVKV 308

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 309 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 368

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D         +V R  +D+R+GD V+V+RAG+VIP+VV +I   R     
Sbjct: 369 TVTNATLHNQD---------EVSR--KDVRIGDTVVVRRAGDVIPEVVRVIFERRPMQET 417

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 418 AVAVSDGIGHRQDDLFAETPSAGQTRSVPLHKPYRLPTRCPICRSEIERE----EGEAVA 473

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 474 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLD 527

Query: 512 --TLQRRQQTS-TTKIENILGFGDVS---------------VTNLYDSINKRRNISLERF 553
             TLQ+ ++T+  T  E+     +VS                 N+   I   +   L RF
Sbjct: 528 IPTLQKMKETADKTVAESDQMPSEVSSVGASGKHKKQPVKWAENILGGIESGKTPELARF 587

Query: 554 IFSLGIRH--------------------------------VGAEIARSLAKYYLSYQNFA 581
           +F+LGIRH                                +G  +A S+A ++   +  A
Sbjct: 588 LFALGIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVAHSIAHFFAQAEQQA 647

Query: 582 --------------QEINNIIAHNNDDWLSLIRVP--LVGDIIAQAIVEF---------- 615
                         Q ++  +A   +    + R+P   + +  AQA+ E           
Sbjct: 648 MIDELLAAGVAPQAQAVSLPVAQYAEPQRWIARLPGFKISENKAQALWELAGQSIKGLQN 707

Query: 616 -------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQ 659
                  +Q  R+      LL+ +       PS     +    ++  +  K  V TGTL 
Sbjct: 708 DKALPADWQAWRSETQNAVLLENLKTFFAQMPSEDETAQGSDGINEAVAGKTFVLTGTLP 767

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 768 TLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 826


>gi|319789848|ref|YP_004151481.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1]
 gi|317114350|gb|ADU96840.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1]
          Length = 723

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 238/721 (33%), Positives = 380/721 (52%), Gaps = 57/721 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS E+AR+    L + I YHD  YY  + P+I D +YD L    +A+  A P++     P
Sbjct: 32  LSTEEARELAEKLRRVIRYHDYKYYVQANPVISDYQYDKLFHALEALEKAHPEVV---TP 88

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +I         KV H     SLE  ++ EDL+++  ++         +++ + +E
Sbjct: 89  DSPTQRISPAFTGEFQKVKHYAEMTSLENTYSPEDLKEWDRKVKELL---GTDTVEYIVE 145

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--RVLSLNIPEIIEVRG 189
           PK DG  + + Y+    V  A RGDG  GED++  IR I +IP     S +  E+I +RG
Sbjct: 146 PKFDGASVELVYKNDILVRGATRGDGIYGEDITVNIRTIKSIPLKAPFSKHGIELISIRG 205

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL----G 244
           EV + K+ F  LN+E    G   +ANPRNAA+G LR  NP ++  R L+ +V+ +     
Sbjct: 206 EVIMPKSVFKKLNEEREKQGLTLFANPRNAAAGTLRLKNPAEVAKRGLDCYVYQILYSEP 265

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           K      + Q E L+ +   GF      +       ++      +  R T  ++ DG+V 
Sbjct: 266 KKLCTDIRTQKEALKLLAECGFKTPPIQKVCKNIEEVIETVLAAQEERETWDFEADGMVI 325

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++    ++LGE    PRW +++KF  KQA T+L+D+  Q+GRTG LTPVA LEPV +G
Sbjct: 326 KVNDICAWEKLGETLHHPRWAVAYKFPAKQAVTKLIDVVWQVGRTGALTPVAILEPVEVG 385

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++ ATL N D+IK            +DIR+GD V+V+RAGE IP +V  + + R  D
Sbjct: 386 GVIVSRATLFNPDFIK-----------SKDIRIGDYVIVERAGETIPYIVGPVKDRRKGD 434

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P   P  CP+C + +V++L+       A  RC   + C AQ  E L ++      +I+
Sbjct: 435 EKPVEVPKHCPVCGAPIVKELDE------AVPRCP-NINCPAQLKEHLVYW--GKVLDIK 485

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG+   +   K       ++  AD++ L+R        +  + G+G     NL + I K
Sbjct: 486 GLGESTANVLTKK----GLVKSIADLYYLKRED------LLKLSGWGLKKSENLLNQIEK 535

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++    + + +LGIRHVG + A+ LAK +           NI    N D+  L  +P +
Sbjct: 536 SKSAPFWKKLTALGIRHVGEKTAQLLAKRF----------KNIEELMNADFTELASIPGI 585

Query: 605 GDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           G I A +I  F++  +N+  +    EA  K         E+ +   +E +++VFTG L+ 
Sbjct: 586 GPITATSIQNFFKAEQNVEMIKKLQEAGFKFERTQEEEQEEKLPKPLEGQRIVFTGELEH 645

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R +AQ  V  LGA  +  +++KT  ++VG+NPGSK +KAQ+LG+K++NE++F+ LL++
Sbjct: 646 FTRKEAQHVVELLGANPTNSVTKKTSFVVVGENPGSKFQKAQKLGIKMLNEKEFIELLKR 705

Query: 721 Y 721
           Y
Sbjct: 706 Y 706


>gi|229815888|ref|ZP_04446212.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM
           13280]
 gi|229808583|gb|EEP44361.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM
           13280]
          Length = 752

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 245/733 (33%), Positives = 371/733 (50%), Gaps = 76/733 (10%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L   + YH   YY    P I D+ +D L      I  A P+L     P+    ++GG ++
Sbjct: 50  LRHLLDYHAYRYYALDAPEITDAAFDKLLVELQQIEAAHPELVT---PDSYTQRVGGYVS 106

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                VTH     S++   N+E+L +++ R            + +T E KIDG  + I Y
Sbjct: 107 EQFTPVTHMARMYSMDDAMNLEELDEWLARTEEALGA---GRVAYTCELKIDGLGVAITY 163

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--------LNIPEIIEVRGEVYISK 195
           + G FV AA RGDG +GEDVS  +R I  +P  LS         +    IEVRGEVY+ K
Sbjct: 164 QNGAFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEAALAHMGADRGTPIEVRGEVYMPK 223

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E  A GR+P+ANPRNAA+G LR+ +P    TR L  F++ +  T+ +    Q
Sbjct: 224 GSFARLNAEADAEGREPFANPRNAAAGSLRQKDPKVTATRSLATFIYSIADTAPLHVDSQ 283

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +  L  +R  GF VN  V +  +   + ++  +  + R  L YDIDG+V KVD F  Q  
Sbjct: 284 HAFLDWLREAGFSVNASVARCTSPAEVHAFCADALAHRGDLDYDIDGVVVKVDGFDQQAD 343

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I+ KF  ++ +T L +I IQ+GRTG+LTPVA  +PV + G+ I  ATLH
Sbjct: 344 LGFTARAPRWAIAFKFPPEEKTTVLREIRIQVGRTGVLTPVAEFDPVTVAGSTIARATLH 403

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+            +D+RVGD ++V +AG+VIP+VV  ++++R  DA  +  P  C
Sbjct: 404 NLDEIR-----------RKDVRVGDTIIVHKAGDVIPEVVGPMLDKRPADAVEWDMPEAC 452

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S VV + +        A+RC   L C AQ  ERL H+VSR   +++GLG + +D  
Sbjct: 453 PACGSPVVHEGDE------VAYRCV-SLDCPAQLKERLIHWVSRGCMDVDGLGDELIDKM 505

Query: 495 FKSEDPAFSIRIPADIFTLQ--------------RRQQTSTTKIENILGFGDVSVTNLYD 540
            +    A  +R  AD +TL               +  +       + +  G      + D
Sbjct: 506 IE----AGLLRDVADFYTLDASAIAALDTGRTYAKDDKKKGVAAGDPIKVGHTIAGKVMD 561

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            + + +   L R +F+LGIRHVG  +A  LA+ +L+       I+ + A + +D   +  
Sbjct: 562 ELVRSKAQPLSRVLFALGIRHVGKSVAEVLAQRFLT-------IDALAAASEED---IAA 611

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVE-------ALLKEVSPSIGR--HEKNVSSE----- 646
              +G  IA ++ EF     N+  ++       AL + +  ++ +   E  V ++     
Sbjct: 612 CEGIGPKIAASVREFLSVSENLEVLQRLREAGLALEENLGAAVAQAAQETGVDADLAAGQ 671

Query: 647 -IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            ++    V TGTL    R +A   +  LGA VS  +S+KT  ++ G   GSKL KA+ LG
Sbjct: 672 PLDGLAFVLTGTLVNRTRDEAGAALKLLGAKVSGSVSKKTSYLVAGPKAGSKLTKAESLG 731

Query: 706 VKIMNEEQFLFLL 718
           V +++EE    +L
Sbjct: 732 VPVLDEEALERIL 744


>gi|330939980|gb|EGH43181.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 731

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/623 (34%), Positives = 338/623 (54%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+             + + + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P+++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+    P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  +I   R  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +          +P VG  +
Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AYEIHSFFEDEHNRSVIDALLGE 598


>gi|224025865|ref|ZP_03644231.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM
           18228]
 gi|224019101|gb|EEF77099.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM
           18228]
          Length = 665

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 236/705 (33%), Positives = 373/705 (52%), Gaps = 54/705 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +E+  H+  YY  + P+I D E+D L R    +    P+     DP  P  ++G 
Sbjct: 7   IDQLREELHRHNHNYYILNAPVISDQEFDKLMRELQDLEARHPE---HFDPTSPSMRVGS 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139
           ++N    +V H  P LSL   ++ +++ +F  R+     +K  N  F    E K DGT I
Sbjct: 64  DINKDFVQVEHKYPMLSLGNTYSEDEVTEFYERV-----RKSLNEDFEICCEMKFDGTSI 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE G+ + A  RGDG  G+DV+  ++ I +IP VL     P+  E+RGE+ +    F
Sbjct: 119 SLTYEDGRLIRAVTRGDGVRGDDVTDNVKTIRSIPLVLHGTGYPKSFEIRGEILMPWTVF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             LN E        +ANPRNAASG L+  N   +  R L+ +++ L     +   G YE 
Sbjct: 179 EELNRERELREEPLFANPRNAASGTLKSQNSAVVAARRLDAYLYYL-LGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ+    GF ++   R+ ++   I  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LQEAEKWGFKISKITRKVHSLQEIFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGY 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRLL +  Q+GRTG +TPVA LEPV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLLKVTYQVGRTGAVTPVANLEPVQLSGTVVRRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I  L           D+ +GD V V++ GE+IPK+  + +  R   ++  +F + CP C
Sbjct: 358 IIASL-----------DLHLGDNVYVEKGGEIIPKITGVDLASRPAGSEKVTFITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR  +       AAH C     C  Q   +++HF+SR A NIEGLG + +D F++ 
Sbjct: 407 GSKLVRYEDE------AAHYCPNETGCPPQIKGKIEHFISRRAMNIEGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   AD++TL++       ++E +   GD S  N+   I K   +  ER +F+L
Sbjct: 461 G----LIHDVADLYTLRKE---DICRLERM---GDKSAENIIQGIRKSTEVPYERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +AK + S    AQ          DD   LI V  +G+ IAQ+I  ++ 
Sbjct: 511 GIRFVGETVAKKVAKAFTSIDALAQA-------TLDD---LIHVDEIGEKIAQSIRLYFS 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           + +N   +E  L++    +   EK++S    +++ + +V +G   +  R + +E + + G
Sbjct: 561 DEKNRSLIER-LQQAGLQLAAGEKDLSDHTDKLQGQSIVISGVFARHSRDEYKELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
                 +SRKT  I+ G+N G SKLEKA++LG++I+NEE+FL ++
Sbjct: 620 GKNVGSISRKTSFILAGENMGPSKLEKAEKLGIRIVNEEEFLKMI 664


>gi|331013366|gb|EGH93422.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 787

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 336/623 (53%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+         +       + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEESDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P+++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVCGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV+  ++ AN     + YY ++   R TL Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+    P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  +I   R  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P VG  +
Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  + +       +  II+    DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQT--LPE 663

Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+ +  +     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779

Query: 719 QQYNTTL 725
            +   T+
Sbjct: 780 TELGVTV 786


>gi|313665597|ref|YP_004047468.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50]
 gi|312949194|gb|ADR23790.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50]
          Length = 668

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 240/711 (33%), Positives = 402/711 (56%), Gaps = 50/711 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S EQ    ++ L+++++     YY    P + D+EYD   +   ++ + +P+   S+ P
Sbjct: 1   MSKEQVLLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITSDSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    K+GG +N    K+TH  P LSL  ++N ++  +F T++ +     ++    +  E
Sbjct: 61  S---QKVGGTVNEKFLKITHKTPMLSLGNVFNFDEFLEFNTQVSKVSNNLNNE---YVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+  ++ I +IP  L ++  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGVLVSAATRGNGIVGEDVTINVKTIKSIP--LKISKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+SK +F  +N + +      +ANPRNAA+G LR+L+   + +R L+ F++     S+  
Sbjct: 173 YLSKAEFEKINKKRLLNSEDLFANPRNAAAGTLRQLDSKIVASRNLDAFLYYY--ISDDS 230

Query: 251 AK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           AK  QYE + ++  LGF  N           I +Y  +  ++++ L Y IDG+V+K+++ 
Sbjct: 231 AKLNQYESILRLNQLGFKTNKETMLCKNLDQIKAYIQKYTNLKNDLDYQIDGIVFKINDK 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ  LG  ++ P+W I++KF  +   T+LLD+   +GRTG +T  A+LEPV + GA I+
Sbjct: 291 NLQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDVFATVGRTGKITYNAKLEPVFLMGAKIS 350

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E     + F 
Sbjct: 351 AATLNNAEYIK-----------TKDLRINSIVKIKKAGDVIPEVIEAIKDEDFYKLEKFK 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
              +CP C S     L    G++     C    +CS + L  L+HF SR+A NI  LG +
Sbjct: 400 PALYCPNCYSL----LEKNDGEV--DQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDR 452

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  F  +     I+  +DI+ L+  +     +I  I  FG  S  NL DSIN  +N S
Sbjct: 453 SLEILFNLK----IIQNISDIYKLEEYKD----QILAIDNFGLKSYLNLIDSINASKNNS 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LE+ +F LGIRH+G++ A+ LAK Y       Q I+N+++ + D+   LI++  +G+ +A
Sbjct: 505 LEKVLFGLGIRHIGSKTAKILAKKY-------QNIDNLMSASYDE---LIQINSIGESLA 554

Query: 610 QAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +IV++++   N+  +  L    ++ +    + N +S I NK  V TGTL +  R + + 
Sbjct: 555 LSIVDWFKIEDNLKLINDLKSFNINFNYLGAKINSNSIIANKSFVITGTLTR-PREEFKT 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +      +S  +S++TD ++VG+N GSKLEKA++LGVKI++E+ F  LL+
Sbjct: 614 LIENNAGKISGSISKQTDYLLVGNNVGSKLEKAKKLGVKIIDEQHFFDLLK 664


>gi|187251632|ref|YP_001876114.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191]
 gi|254781329|sp|B2KE31|DNLJ_ELUMP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|186971792|gb|ACC98777.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191]
          Length = 656

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 244/709 (34%), Positives = 377/709 (53%), Gaps = 56/709 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ +KE+  L  +I+YH++ YY      I D+EYD L  R   +    PD A   D   
Sbjct: 1   MDKIKKEIEDLRSKINYHNNLYYNLDNAEISDAEYDGLYARLKFLEAMNPDYA---DAAS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  KIGG  +     VTH+   +SL+  ++ E++ ++  R  +        +     E K
Sbjct: 58  PTQKIGGAASRVFTSVTHASQMMSLDNTYSSEEVLRWHERCVKSL---GHGNFEMVAEAK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG   ++ YE G    AA RGDG +GEDV+A I+ I TIP  +S      IE+RGE+YI
Sbjct: 115 IDGVSCSLTYEGGVLTVAATRGDGKTGEDVTANIKTIKTIPHNISFK--NKIEIRGEIYI 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
            K D   LN+     G   +AN RNAA+G +R+ N     +R L FF H  G   ++  K
Sbjct: 173 EKADLKRLNEIQENEGENIFANTRNAAAGSIRQKNAEISASRPLKFFAHSFG-YGDVDVK 231

Query: 253 GQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           G  E +   +  GF V  N +R A+  + I S+Y   + +R+ LPYD+DG+V K++ F+ 
Sbjct: 232 GFAEFMDLCKSWGFSVTPNRIRTAD-INEITSFYKRFEELRAGLPYDVDGIVVKINSFAE 290

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK LG  A+SPRW I+ K+   Q  T +  I   +GRTGI+TPVA LEPV + G +I+NA
Sbjct: 291 QKILGVTAKSPRWAIAFKYKPPQGKTVVNKIIFSVGRTGIITPVAELEPVAVAGVIISNA 350

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D IK L            ++ GD V+V+RAGEVIPK+++++   +         P
Sbjct: 351 TLHNFDEIKRL-----------GVKEGDTVIVERAGEVIPKILNVV---KDGGGNEVKAP 396

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S+V R  +        A RC    AC AQ    L HFVSR A +I+G G+  +
Sbjct: 397 KNCPSCGSKVYRYEDE------VAIRCINP-ACPAQIKGHLLHFVSRAAMDIDGFGEAVV 449

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   + +     ++  ADI+ L+  Q  +         F D  V NL  ++   +  SL 
Sbjct: 450 EQVVEKK----YVKDFADIYNLKAEQLLTLDL------FKDKKVNNLLLAVEASKKRSLS 499

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +++ GIRHVG +    LA ++       ++I N++A + +D+    ++  +G ++ Q+
Sbjct: 500 RVLYAFGIRHVGQKTGEILANHF-------EDIENMLAASLEDFQ---KINEIGPVVGQS 549

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYV 670
           + +F Q+ +    + A LK    +  + +  ++ +E+  K LVFTG L  + R +A+   
Sbjct: 550 VYDFMQSAKGKEEI-ARLKTAGVNFTQPKVQLAGNELLGKTLVFTGELN-MPRTQAEALA 607

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  VS  +S KT  ++ G + GSKL KAQ LGV +++EE+FL L++
Sbjct: 608 KAHGGKVSGSVSSKTSYVVAGADAGSKLTKAQSLGVSVISEEEFLNLIK 656


>gi|17229209|ref|NP_485757.1| NAD-dependent DNA ligase LigA [Nostoc sp. PCC 7120]
 gi|81772126|sp|Q8YW98|DNLJ_ANASP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|17135537|dbj|BAB78083.1| DNA ligase [Nostoc sp. PCC 7120]
          Length = 677

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 240/717 (33%), Positives = 383/717 (53%), Gaps = 66/717 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +EL  L Q+ SY    YY    PI+ D+ YD L R    +    P+L     P+ P  +I
Sbjct: 12  EELRRLLQQASY---AYYVSDAPIMEDAVYDQLYRELQQLEIQHPELV---TPDSPTQRI 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIFFTLEPKIDGT 137
           G         V H+IP  SLE  +N+E+L+ +  R    W+++       +  E KIDG+
Sbjct: 66  GERPATQFLSVRHNIPLYSLENAFNVEELQAWDQR----WRRQVAPTEAEYVAELKIDGS 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-----EIIEVRGEVY 192
            I + Y+ G  V  A RGDG +GED++  +R I +IP  L LN       E +EVRGE +
Sbjct: 122 AIALTYQNGILVRGATRGDGVTGEDITQNVRTIRSIP--LRLNFDGIEKVEKVEVRGEAF 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL---GKTSE 248
           +    F  +N+E    G + +ANPRNAA+G LR+L+   + R  L+FF + L   G    
Sbjct: 180 LPLEVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVARRRLDFFAYTLHISGMDDA 239

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A  Q+E L+ ++ +GF VN   +   +   +  YY    + R  LPY  DG+V K++ 
Sbjct: 240 SIANTQWEALELLQKMGFRVNPNHKLCQSLAEVADYYKYWDTERLNLPYMTDGVVLKLNS 299

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F LQ+QLG   R PRW ++ K+  ++A TR+ +I + +GRTG LTP+A++ PV + G  +
Sbjct: 300 FKLQEQLGFTQRFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAQMRPVQLAGTTV 359

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN D I  L           DIR+GD V+V++AGE+IP+VV +I   R  D QPF
Sbjct: 360 SRATLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPADTQPF 408

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C   VVR+    TG+  A  RC    +C A     ++H+VSRDA +I+G+G+
Sbjct: 409 IMPTHCPVCGQPVVRE----TGE--AVTRCVNA-SCPAILKGSIEHWVSRDALDIKGVGE 461

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +     ++  D    +   AD++ L      +T ++  +   G+ S   L ++I + +N 
Sbjct: 462 K---LVYQLVDKGL-VHSVADLYDL------TTERLFALERMGEKSAQKLIEAIAQSKNQ 511

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R ++ LGIRHVG+  A+ L++ Y +    +       A  +D    +  +  +G  I
Sbjct: 512 PWSRVLYGLGIRHVGSVNAQLLSEKYRAVAELSS------AKQSD----IEGIYGIGAEI 561

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQR 663
           AQ++ ++++   N   +E  L+     +   E+     N   ++  K  V TGTL  ++R
Sbjct: 562 AQSVYQWFRINANQSLIER-LQAAGLKLANTEEIPVMNNGILKLNGKTFVVTGTLPTLKR 620

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +  + + G  V+  +S+KTD ++VG++ GSKLEKAQ LG+  + E Q L +L++
Sbjct: 621 DEVKALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLEKAQALGIAQLTETQLLEILEE 677


>gi|261401085|ref|ZP_05987210.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970]
 gi|269208977|gb|EEZ75432.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970]
          Length = 827

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 264/840 (31%), Positives = 410/840 (48%), Gaps = 172/840 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L    +Y    YY    P + D+EYD L R  +A+    P+L   + P+ P  ++G
Sbjct: 18  ELTDLLNRYAYE---YYTLDAPSVPDAEYDRLFRELEALELNHPEL---KLPDSPTQRVG 71

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133
           GE      +V H +P LSL   ++ +D         +Y F ++     +     + +EPK
Sbjct: 72  GEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRNGLNGEQPEYVIEPK 131

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV 
Sbjct: 132 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRGEVL 191

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K DF ALN       +KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F
Sbjct: 192 MLKADFAALNKRQADNNQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 250

Query: 251 AKGQY-EMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
           A  ++ + L   + LGF + +G      F  I   +++Y +M+  R  LPY+IDG+V KV
Sbjct: 251 AAEEHIQELAYFQKLGFSLPDG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKV 308

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG 
Sbjct: 309 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 368

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422
            +TNATLHN+D +             +D+R+GD V+V+RAG+VIP+VV +I   R     
Sbjct: 369 TVTNATLHNQDEVSR-----------KDVRIGDTVVVRRAGDVIPEVVRVIFERRPMRET 417

Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
                                       P  +P+  P+ CPIC+S + R+     G+ VA
Sbjct: 418 AVAVSDSIGHRQDDLFAETPSANQTRSVPLHKPYRLPTHCPICRSEIERE----EGEAVA 473

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511
             RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++   
Sbjct: 474 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLD 527

Query: 512 --TLQRRQQTS--TTKIENILGFGDVSV--------------TNLYDSINKRRNISLERF 553
             TLQ+ ++ +  T    + +     SV               N+   I   +   L RF
Sbjct: 528 IPTLQKMKEAADKTVAESDQMPSEGSSVGASGKHKKPPVKWAENILAGIESGKTPELARF 587

Query: 554 IFSLGIRHVGAE--------------------------------IARSLAKYYLSYQNFA 581
           +F+LGIRHVG                                  +ARS+A ++   +  A
Sbjct: 588 LFALGIRHVGERTAKTLAQAFGSLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 647

Query: 582 QEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF--------- 615
             I+ ++A         + +P                  + +  AQA+ E          
Sbjct: 648 M-IDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGQSIEGLQ 706

Query: 616 --------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTL 658
                   +Q  R+     ALL+ +       PS     +    ++  +  K  V TGTL
Sbjct: 707 TDKALPTDWQAWRSEAQNAALLENLKTFFAQMPSEDEAAQRSDGINKAVAGKTFVLTGTL 766

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 767 PTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 826


>gi|332638905|ref|ZP_08417768.1| NAD-dependent DNA ligase [Weissella cibaria KACC 11862]
          Length = 678

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 236/712 (33%), Positives = 388/712 (54%), Gaps = 54/712 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I  +++ +A+ E+ +L+Q++      YY+   P + D+ YD    R +A+  A+P+L   
Sbjct: 7   IATMTVIEAKAEIDALQQDLKQWAQEYYENDAPSVEDAVYDREYNRLEALEAAYPELVT- 65

Query: 69  EDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
             P+    ++GG+   S L KV H IP LSL  ++++++L  ++       QK  +  + 
Sbjct: 66  --PDSITQQVGGKATKSDLPKVVHDIPMLSLGDVFSLDELYDWLATT----QKSFNTPLS 119

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  E KIDG  I++ YE G+ + A+ RGDG+ GEDV+A +R I  IP+   LN P  +EV
Sbjct: 120 YNAELKIDGLAISLVYENGELIQASTRGDGNIGEDVTANVRQIKRIPK--QLNEPISVEV 177

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG-LG 244
           RGEVY+ K  F+ LN++    G   +ANPRNAA+G LR+L+   +T  R L+ F++  + 
Sbjct: 178 RGEVYMPKAAFVTLNEQRERDGLSTFANPRNAAAGSLRQLD-VKVTKQRQLDAFLYAAVD 236

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             + +    Q ++LQ++  LG P N       +   I +Y N+  + R  L Y IDG+V 
Sbjct: 237 AENTLGVTTQADLLQRLAELGLPANPTNAVVASEADIAAYINDETATRDELAYGIDGIVI 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  +  ++LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV + 
Sbjct: 297 KVNSLAYHEELGNTVKVPRWAIAYKFPPEEAHTVVRDIEWTVGRTGAVTPTAVMDPVQLA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  A+LHN DY+             +DIR+GD V + +AG++IP++  +I+++R  D
Sbjct: 357 GTTVARASLHNPDYLN-----------SKDIRIGDTVTLHKAGDIIPEIGQVILSQRPTD 405

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           ++ +  P  CP C   +V       G++  A RC     C AQ  E L HF SRDA NI+
Sbjct: 406 SEVYQMPLGCPACGQELVH----IDGEV--ALRCINPF-CPAQVQESLTHFASRDAMNID 458

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + +            I   +D++ L   Q  +  K      FG+ S  NL  +I  
Sbjct: 459 GLGPKIVGQLLSRN----MISQVSDLYRLTFEQLLTLDK------FGETSANNLLRAIEN 508

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  S+ER +F LGIR+VGA+ A+++A  +++         + IAH + D   +  +P +
Sbjct: 509 SKQNSVERLLFGLGIRNVGAKAAKTIAAKFVTL--------DAIAHASAD--DIAELPGM 558

Query: 605 GDIIAQAIVEFY--QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           G II  +I +++  ++ + + A    L   +      E    +   +KK+V TG L    
Sbjct: 559 GLIIGHSIAQYFDTEHAQELVADFEQLGVNTRYTQAVEIATDTVFSDKKVVLTGKLALFS 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           R +A  ++   GA VS  +S+KTD++I G + GSKL KAQ+LG++I +E Q 
Sbjct: 619 RSEATAWLESQGATVSGSVSKKTDLLIAGADAGSKLTKAQELGIEIWSEAQL 670


>gi|218131107|ref|ZP_03459911.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697]
 gi|217986811|gb|EEC53144.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697]
          Length = 666

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 237/709 (33%), Positives = 375/709 (52%), Gaps = 55/709 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L  ++  H+  YY  + P I D E+D + R    +    P+    +D N P  +
Sbjct: 4   KERIDQLRTDLHRHNYNYYVLNTPEISDKEFDDMMRELQDLEKEHPEY---QDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136
           +G ++N +  +VTH  P LSL   ++  ++  F  R+     KK  N  F    E K DG
Sbjct: 61  VGSDLNKNFTQVTHKYPMLSLGNTYSENEVTDFYDRV-----KKALNEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL   N PE  E+RGE+ +  
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNNYPEHFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L    E+   G 
Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ     GF ++   ++ ++   +  Y     + R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQTAAGWGFKISEHTKKTHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKS 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAITPVANLDPVQLSGTIVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + 
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITH 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++VR      G+  AAH C    AC  Q   +++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDT 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I+  AD++      Q +   I+N+   G+ S  N+   I   + +  ER 
Sbjct: 458 FYR----LGLIKDTADLY------QLTAEDIKNLDRMGEKSAENIIKGIKASKEVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG  +A+ +AK +          NNI    N D   L  +  +G+ IAQ+I+
Sbjct: 508 LFALGIRFVGETVAKKIAKSF----------NNIEELENADLEKLTSIDEIGEKIAQSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ +P N+  +E  LK     + R E+++   + ++  + +V +G      R + ++ +
Sbjct: 558 IYFSSPLNVSLIER-LKSAGLQLYRKEEDLNEYTDKLAGQSIVISGVFTHHSRDEYKDLI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ G+N G SKLEKA +LG+KI++E++FL L+
Sbjct: 617 EKNGGKNVGSISTKTSFILAGENMGPSKLEKAHKLGIKIISEDEFLTLI 665


>gi|332704021|ref|ZP_08424109.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554170|gb|EGJ51214.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay]
          Length = 771

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/614 (35%), Positives = 351/614 (57%), Gaps = 52/614 (8%)

Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
           WQ        F ++PK+DG  +   YE G+ V AA RGDG  GEDV+  +R +  +P VL
Sbjct: 189 WQSLPALLGTFWIDPKLDGLALEAIYENGRLVRAATRGDGEIGEDVTQNVRTVKNLPLVL 248

Query: 178 SLN--IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITR 234
                +P ++EVRGEV + K DF ALN+     G K +ANPRNAA+G +R+L+P    TR
Sbjct: 249 HDGGVMPRLLEVRGEVVMRKADFHALNERQAERGEKIFANPRNAAAGSVRQLDPRITATR 308

Query: 235 YLNFFVHGLGKTSEIFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            L FF +G+G+     A   +GQ E++  +  LGF +    RQ      + + +  +++ 
Sbjct: 309 PLRFFAYGIGRVDWNGAPGWQGQDEIIAGLAQLGFAIPPEARQCRHPDEVAASFERLQAG 368

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R  LP++IDGLV K++   LQ+ LG  A++PRW ++ KF   QA T L DI IQ+GRTG+
Sbjct: 369 REALPFEIDGLVAKLNCLELQRFLGFTAKAPRWALALKFPAYQAETLLRDIRIQVGRTGV 428

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           LTPVA L+PV++GG  +++A+LHNE YI+            +D+R+GDRVL++RAG+VIP
Sbjct: 429 LTPVAELDPVSVGGVTVSSASLHNESYIR-----------EKDLRLGDRVLIQRAGDVIP 477

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +  +R    Q ++FP  CP+C + V+  L  +  ++    +C   ++C A   + 
Sbjct: 478 EVVRPLAEKRTGGEQEYTFPPECPVCHTEVI--LASEERRI---WKCV-NISCPAVIRQS 531

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           + HFVS+   +IEGLG++ ++           +R PAD+FTL++      T +  +   G
Sbjct: 532 IIHFVSKAGLDIEGLGRKWVEILIDKG----MVRSPADLFTLKK------TDLLTLERMG 581

Query: 532 DVSVTNLYDSINK-RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           D S +N  +SI + +    L R I +LGI HVG E AR LA  +       ++++ + A 
Sbjct: 582 DKSASNFVESIRQAKEEAKLPRLIAALGIPHVGEETARLLASRF-------RDLDALGAA 634

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV------SPSIGRHEKNVS 644
              +   L  +P + D I+++IV+F+ N  N   +    KE+      +P++   E    
Sbjct: 635 TRQE---LEELPGISDKISESIVDFFLNEANRSLL-GRFKEIGLWPSNAPAVA-PEGKTK 689

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +  K+++FTG L  + R +A+  + Q G   +  +S+  D ++VG+NPGSKL+KA +L
Sbjct: 690 LPLAGKRVLFTGGLPSMSRSEAETLLEQAGGTAAKSISKNVDYVVVGENPGSKLDKADKL 749

Query: 705 GVKIMNEEQFLFLL 718
           G+ ++  E+FL L+
Sbjct: 750 GLAVIGFEEFLRLV 763



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R+ +  L +E+ +H+  YY    P+I D+EYD + R    +    P+L    D + P
Sbjct: 6   EDIRQRVERLRKELHFHNYRYYVLDAPVISDAEYDRMMRELQDLEEHNPEL---RDTSSP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             ++G        +  H++   SL+   ++++ R+F+ R+ R ++
Sbjct: 63  TQRVGAAPAEGFAQYRHALRMYSLDNAMSVDEWREFVARVGRHFE 107


>gi|291557760|emb|CBL34877.1| DNA ligase, NAD-dependent [Eubacterium siraeum V10Sc8a]
          Length = 660

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 235/705 (33%), Positives = 367/705 (52%), Gaps = 51/705 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQ + E   L +E+  H+  YY    P I D EYD L RR   I    P++      + P
Sbjct: 4   EQIKSEYEQLCREVEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSE---SSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG    +  KVTH +   SL+ +++  +L +F  R+     KK      + +EPKI
Sbjct: 61  TQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERV-----KKAVGKAVYCVEPKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ Y+ G F   + RGDG  GED++  ++ I +IP  L+  IP  IEVRGEVY+ 
Sbjct: 116 DGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMELNEKIP-FIEVRGEVYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K DF  L  + +    +P  NPRNAA+G LR+ +     +R L+ FV  L +        
Sbjct: 175 KADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIEGRELTC 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  M+ LGF V +G +  +     VS   E+   R +  YDIDG V KVD F L+ 
Sbjct: 235 HSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDNFELRN 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+ P+W ++ K+  ++  T+LLDI+I +GRTG LTPVA  EPV + G  ++ A L
Sbjct: 295 ELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSRAVL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+DYI             +DIR+GD + V++AG++IP+VV  + +    +++PF  P  
Sbjct: 355 HNQDYID-----------SKDIRIGDIIAVRKAGDIIPEVVRSVSHAE--NSEPFIIPHI 401

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C  +  R  +       A  RC   + C AQ L+ ++HF SR A NI+GLG+  +  
Sbjct: 402 CPVCHGKAERAEDE------AVIRCV-NIDCPAQLLKNIEHFASRPAMNIDGLGEAVVKQ 454

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++      I   AD+++LQ++       +E + GF  VS + L  +I   +  S +R 
Sbjct: 455 LVENR----LISTVADLYSLQQQD------LEMLPGFAKVSASKLIANIENSKANSPDRL 504

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGI+ +G + A+ L K++ S +  ++ +   I+           V   GDI+A  I 
Sbjct: 505 LFALGIKGIGQKNAQLLMKHFGSIEKLSETLPEEIS----------AVENFGDILANNIF 554

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
                P     +E  LK    +        S ++     V TGTL  + R +A+  + Q 
Sbjct: 555 TALHEPHMTELIER-LKSYGVNTVYQSDVKSDKLAGLTFVITGTLPDMTRDEAKTLIEQN 613

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G   S  +SRKT  ++ G+  GSKL KAQQLGV +++++Q + ++
Sbjct: 614 GGKCSGSVSRKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMI 658


>gi|302865766|ref|YP_003834403.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029]
 gi|302568625|gb|ADL44827.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029]
          Length = 717

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 228/712 (32%), Positives = 373/712 (52%), Gaps = 51/712 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+  ++L QE++ H   YY    P + D+E+D   R  +A+   +P L     P+ P  
Sbjct: 32  ARERHATLSQELTEHQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPAL---RTPDSPTQ 88

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     VTH+   LSL+  +  E+L  +  R+    ++     + +  E K+DG
Sbjct: 89  RVGGTFSTDFTPVTHAERMLSLDNAFADEELAAWSERV----ERDAGGPVPYLCELKVDG 144

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIEVRGEV 191
             I + YEKG+ V AA RGDG +GEDV+A +R+I  +P  L+      ++P++IEVRGE+
Sbjct: 145 LAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIKGVPARLTPAGDFPDVPDLIEVRGEI 204

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G  +   
Sbjct: 205 YFPVAAFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGVGARTGFR 264

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    ++  G P ++  R  +   G+  Y       R  + ++IDG+V KVD  S
Sbjct: 265 PAAQSESYAALKAWGLPTSDRWRVVDDLAGVAEYIAYYGRHRHDVEHEIDGVVVKVDPVS 324

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I+ K+  ++ +T+LLDI++++GRTG +TP A L+PV + G+ +  
Sbjct: 325 IQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRAVLQPVRVAGSTVAY 384

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN         + +V R G  + +GD V++++AG+VIP+V+  +V  R  DA+PF  
Sbjct: 385 ATLHN---------AREVERKG--VLIGDTVVLRKAGDVIPEVLGPVVELRPADARPFVM 433

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C +     L P     V   RC  G AC  Q  ER+ +  SR   +IE LG++ 
Sbjct: 434 PTTCPACGT----PLAPAKESDVDI-RCPNGRACPGQIRERVFYLASRKVLDIEVLGEKG 488

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 ++     I    D+F L   Q + +    N  G    + T L D++ + +   L
Sbjct: 489 AAALLDAQ----IITNEGDLFQLDAEQLSRSPFFVNKDGSLGSNATKLLDNLAEAKERDL 544

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LA+++ S           ++           V  VG  IA 
Sbjct: 545 WRVLVALSIRHVGPTAAQALARHFRSVAAIEAAGEEELSS----------VDGVGPTIAA 594

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKA 666
           ++ E++     +     ++++ + +  R  +  + E    ++   +V TGTL    R +A
Sbjct: 595 SVKEWFA----VDWHRDVVRKWAEAGVRMAEEAADEGPRPLDGITVVVTGTLSGFSRDQA 650

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            E +   G  V+  +S+KT  ++VGDNPGSK +KA  L + I++E+ F  LL
Sbjct: 651 AEAIQVRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKLPILDEDGFRVLL 702


>gi|119476275|ref|ZP_01616626.1| DNA ligase [marine gamma proteobacterium HTCC2143]
 gi|119450139|gb|EAW31374.1| DNA ligase [marine gamma proteobacterium HTCC2143]
          Length = 781

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/626 (34%), Positives = 339/626 (54%), Gaps = 47/626 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I   ++++  L   ++ H+  Y+   +P + D+EYD L R+   +   FP    ++ P  
Sbjct: 4   ISDPKQQIEELRSTVNLHNYRYHALDEPTVPDAEYDRLIRQLQVLEAKFPQFITNDSPT- 62

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G +      +V H  P LSL+ ++N ++L  F  R+     K    S  +  EPK
Sbjct: 63  --QRVGAKPLAGFNQVQHEAPMLSLDNVFNAQELSDFDHRVKERLGKGVKFS--YCCEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ Y  GK V  A RGDG++GED++  +R IPTIP  L     P ++EVRGE+Y
Sbjct: 119 LDGAAVSLLYRDGKLVRGATRGDGNTGEDITHNVRTIPTIPLALIGEGYPRLLEVRGEIY 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG-KTSEI 249
           + +  F  LN    A   K + NPRNAA+G LR L+   IT  R L    + +G      
Sbjct: 179 MPRAGFDMLNKRARANDEKLFVNPRNAAAGSLRMLD-AKITAERPLEMCCYSVGVMEGGD 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A     +L +++  GF +NN +R  +   G + Y++ +   R  LPYDIDG+VYKVD  
Sbjct: 238 LAPNHSGILAQLQGWGFRINNEMRVVDDVEGCLKYHDYLLRRRPDLPYDIDGIVYKVDTI 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S Q+ LG  A+ PRW I+HKF  ++  T LLD+D Q+GRTG +TPVARL PV +GG  ++
Sbjct: 298 SQQQSLGFTAKGPRWAIAHKFPAEEEITTLLDVDFQVGRTGAVTPVARLAPVFVGGVTVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            I + D V+V+RAG+VIP++  +++  R  DA   +
Sbjct: 358 NATLHNRDEIERL-----------GIMINDAVVVRRAGDVIPQIAKVVLERRGSDAIKIA 406

Query: 430 FPSFCPICQSRVVR---DLNPKTGK---LVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           FP +CP+C S V R     + K+G+   +  A+RC G L C AQ  + + HF SR A +I
Sbjct: 407 FPDYCPVCGSHVERVKIVTHSKSGRREGVGVAYRCVGRLVCRAQLSQAIIHFASRKALDI 466

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG++ ++     E     ++ PAD++ LQ       + +  + GF ++S  NL  +I 
Sbjct: 467 DGLGEKIVEQLVIEE----RLKSPADLYRLQ------VSDLAALEGFAELSAKNLVSAIA 516

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            RR + L + +F+LGI  VG E A+ LA+ + S +        +          LI++P 
Sbjct: 517 ARRAVPLHKLVFALGIPDVGEETAKVLARVFGSLERIRVAKPEL----------LIQLPD 566

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALL 629
           +G  +A  I EF+ +  N   ++ L+
Sbjct: 567 IGREVAGEITEFFADNHNALVLDDLV 592



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 16/184 (8%)

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           R  +S  + I S  I ++G   A  +A ++ +       +  ++A + DD   + ++ + 
Sbjct: 609 RGGLSFPQLIASFNISNIGPTSAARVAAHFGT-------MAALMAASIDDLAMVEKLSVK 661

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQ 659
               A  + +++Q  +N    E L +++      H      + EN  L     V TGTL+
Sbjct: 662 A---ASGLFDYFQCTQNRQYAEQLEQQLL-DFKMHWNCEKGQTENLPLSGMTYVVTGTLE 717

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + R  A++ +  LGA V+  +S+ T  ++ G   GSKL KA+QLGV +M+E  FL LL 
Sbjct: 718 SMGRDLAKQKLESLGAKVAGSVSKNTHCVVAGSAAGSKLVKAEQLGVTVMDEAMFLALLA 777

Query: 720 QYNT 723
           +++ 
Sbjct: 778 EFDV 781


>gi|241759788|ref|ZP_04757888.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
 gi|241319796|gb|EER56192.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
          Length = 859

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 268/841 (31%), Positives = 410/841 (48%), Gaps = 177/841 (21%)

Query: 18  RKELSSLEQEISYHDDC-------YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           R  ++   Q I Y  D        YY    P + D+EYD L R  +A+    P+L     
Sbjct: 35  RLHMNPTAQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL--- 91

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDN 124
           P+ P  ++GGE      +V H +P LSL   ++ +D         +Y F ++     +  
Sbjct: 92  PDSPTQRVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVHGGLNGE 151

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPE 183
              + +EPK DG  I++ Y  G    AA RGDG +GEDV+  ++ +  IP R+   NIPE
Sbjct: 152 KPEYVIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPE 211

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVH 241
           +IE+RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF +
Sbjct: 212 LIEIRGEVLMLKADFAALNARQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPY 270

Query: 242 GLGKTSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            + +    F A+   + L   + LGF + ++          ++++Y +M+  R TLPY+I
Sbjct: 271 SIARQQGGFIAEEHLQELSYCKELGFSLPDSNFGCFPNIDEVLAFYEQMQQKRPTLPYEI 330

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+
Sbjct: 331 DGMVVKVNSLAQQEKLGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 390

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I  
Sbjct: 391 PVFVGGVTVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFE 439

Query: 420 ER---------------------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
            R                            P  +P+  P+ CPIC S + R+     G+ 
Sbjct: 440 RRPMQETKISVSDGLQDDLFAETPSETRSEPIHKPYRLPTHCPICHSEIERE----EGEA 495

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF- 511
           VA  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ 
Sbjct: 496 VA--RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYR 549

Query: 512 ----TLQRRQQT-----------STTKIENILG-FGDVSVT------------NLYDSIN 543
               TLQ+ ++T           S ++IE+  G  G+  +             N+   I 
Sbjct: 550 LDIPTLQKMKETADKASANEEEPSNSEIEDFEGETGNTLLAKNVKKQPTKWAENILAGIE 609

Query: 544 KRRNISLERFIFSLGIRHVGAE--------------------------------IARSLA 571
             +   L RF+F+LGIR+VG                                  +ARS+A
Sbjct: 610 ASKTPELARFLFALGIRYVGERTAKTLAQAFGTLENVRHAPEPILACLPDIGTVVARSIA 669

Query: 572 KYY----------------LSYQNFAQEINNIIAHNNDDWLSLIRVP------------- 602
            ++                ++ Q+ A  I  +       W++  R+P             
Sbjct: 670 HFFAQKAQQAMIDELLAVGVAPQSQAVTIPPLRHAEPQRWIA--RLPDFKISETKALALW 727

Query: 603 -LVGDIIA-----QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---------I 647
            L G  I      +A+   +Q  RN      LL+ +     +   N+  E         +
Sbjct: 728 ELAGQSIEGLQTDKALPADWQTWRNKPQNATLLENMKTFFAQTRSNLQDETISDGINEAV 787

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKAQ LGV 
Sbjct: 788 AGKTFVLTGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGVA 847

Query: 708 I 708
           +
Sbjct: 848 V 848


>gi|289626390|ref|ZP_06459344.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330866315|gb|EGH01024.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 787

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/623 (35%), Positives = 335/623 (53%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  YY   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDEHNYRYYVLDEPSIPDVEYDRLFHELKALEVENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+         +       + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P+++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV+  +  AN     + YY ++   R TL Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLETLKKWGMPVSRELNLANGVEECLDYYRDIGERRLTLNYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+    P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  +I   R  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P VG  +
Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  + +       +  II+    DWL +     + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRHT--LPE 663

Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+ +  +     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 720 ERMSRDVAKEKLETLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779

Query: 719 QQYNTTL 725
            +    +
Sbjct: 780 TELGVAV 786


>gi|313679715|ref|YP_004057454.1| DNA ligase, nad-dependent [Oceanithermus profundus DSM 14977]
 gi|313152430|gb|ADR36281.1| DNA ligase, NAD-dependent [Oceanithermus profundus DSM 14977]
          Length = 670

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/713 (32%), Positives = 375/713 (52%), Gaps = 52/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+A + ++ L   I  H+  YY   +P I D+EYDAL R    +  AFP+L     P
Sbjct: 1   MTREEAARRVAELTWAIRRHNHLYYVLDRPEISDAEYDALVRELAELEAAFPEL---RSP 57

Query: 72  NGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P N++G G +  S   VTH  P  SL+  +  +++  F  R+ R      +  + + L
Sbjct: 58  ASPTNQVGAGVLGASFEPVTHPTPLYSLDNAFGPDEIAAFEERVARAL--GTEPPLEYAL 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  I + YE G+ V+ A RG+G  GE+V+  +  +  +P  L    P  +EVRGE
Sbjct: 116 EYKIDGLSINLLYEGGRLVWGATRGNGRVGEEVTQNLLTVRDVPSRLE-GAPPRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSE 248
           VY+ +  FL LN      G  P+ NPRNAA+G +R+ +P     R L  + +G+G+  +E
Sbjct: 175 VYMPREVFLELNRAREEAGELPFKNPRNAAAGAVRQKDPRIAAERRLAAYFYGVGEGAAE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + A+ Q E+L ++  LG PV    R A    G+   Y +M + R  LP++ DG   KV++
Sbjct: 235 LRARTQLELLDRLEALGLPVEPHRRSAVGAAGVEEAYRQMLARRDALPFEADGATVKVND 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++LG  A+SPRW +++KF  ++  TR+ ++  Q+GRTG +TPVA L PV + G  +
Sbjct: 295 LEAQRRLGHTAKSPRWAVAYKFPAEEKETRIEEVVFQVGRTGRITPVAHLTPVQLDGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHN+ +I+ LDA           RVGD V + ++G +IP+++ +I  +R    +P 
Sbjct: 355 SRVTLHNKAFIEELDA-----------RVGDAVRLHKSGGIIPEILRVIKEKRTGKEEPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C + +V D     GK+   HRC   L C A+  ++L+H+ SR A +++GLG+
Sbjct: 404 VFPYHCPECGANLVED-----GKI---HRCPNPL-CPAKAFQQLRHWASRRAMDVQGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       ++  AD++ L +       ++      G+ S  NL   + + +  
Sbjct: 455 KLIEQLLEK----GLVKDAADLYRLGKEDLAGLERM------GEKSAENLLVQLEESKGR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER ++ LGI  VG  +AR+LA+ + +       I  ++    ++   L  VP VG + 
Sbjct: 505 GLERALYGLGIPQVGEALARTLARRFGT-------IEKLMEAGEEE---LEAVPDVGPVT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A  I     + R    +   LKE   S   +  +     +    +V TG L +  R + +
Sbjct: 555 AAEIRRALADERMRSLIRR-LKEAGVSFEAKQAQPAEQPLAGLTIVLTGELSR-PRSEVK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           E +  LGA V+  +SRKT  ++ G   GSKL+KA++LGV +++E     LL +
Sbjct: 613 EELEALGAKVAGSVSRKTSYVVAGPGAGSKLKKARELGVPVLDEAGLAALLAE 665


>gi|330897709|gb|EGH29128.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 657

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/623 (34%), Positives = 338/623 (54%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAQLDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+             + + + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P+++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+    P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  +I   R  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +          +P VG  +
Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AYEIHSFFEDEHNRSVIDALLGE 598


>gi|320323491|gb|EFW79576.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 787

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 336/623 (53%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+         +       + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P+++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV++ ++ AN     + YY ++   R TL Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+    P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  +I   R  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI +LGI  VG E A+ LA+   S     Q +  ++ +          +P VG  +
Sbjct: 526 TLARFIHALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  + +       +  II+    DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQT--LPE 663

Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+ +  +     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779

Query: 719 QQYNTTL 725
            +    +
Sbjct: 780 TELGVAV 786


>gi|189461356|ref|ZP_03010141.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136]
 gi|189431885|gb|EDV00870.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136]
          Length = 667

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 236/706 (33%), Positives = 374/706 (52%), Gaps = 52/706 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +E+  H+  YY  + P+I D E+D L R    +    P+     DPN P  ++G 
Sbjct: 7   IDQLREELHVHNYNYYVLNAPVISDLEFDKLMRELQDLEALHPEYY---DPNSPSVRVGS 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++N +  +V H  P LSL   ++  ++ +F  R+     K  +       E K DGT I+
Sbjct: 64  DLNKNFTQVEHKYPMLSLGNTYSQAEVTEFYERV----SKSLNEEFELCCEMKYDGTSIS 119

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFL 199
           + YE GK V A  RGDG  G+DV+  ++ I +IP VL     P+  E+RGE+ +  N F 
Sbjct: 120 LTYEDGKLVRAVTRGDGVRGDDVTDNVKTIRSIPLVLHGEGYPKNFEIRGEILMPWNVFE 179

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
            LN E        +ANPRNAASG L+  N   +  R L+ +++ L     +   G YE L
Sbjct: 180 ELNRERELREEPLFANPRNAASGTLKSQNSAVVANRKLDAYLYYL-LGDNLPHDGHYENL 238

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           Q+    GF +++  R+A T   +  + N     R  LP   DG+V KV+    Q+ LG  
Sbjct: 239 QEAAKWGFKISHISRKARTLQEVFDFINYWDVERKNLPVATDGIVLKVNSLRQQRNLGYT 298

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+SPRW I++KF  ++A T+L  +  Q+GRTG +TPVA L+PV + G ++  A+LHN D 
Sbjct: 299 AKSPRWAIAYKFQAERALTKLEKVTYQVGRTGAVTPVANLDPVQLSGTVVRRASLHNADI 358

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I  L           D+ +GD V V++ GE+IPK+  + V+ R   ++  +F + CP C 
Sbjct: 359 IASL-----------DLHIGDMVYVEKGGEIIPKITGVEVSARPAGSEKVTFITHCPECG 407

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S +VR  +       AA+ CT   AC  Q   +++HF+SR A NIEGLG + +D F++  
Sbjct: 408 SELVRYEDE------AAYYCTNETACPPQIKGKIEHFISRRAMNIEGLGPETVDLFYQEG 461

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I   AD++TLQ      T  I  +   G+ S  N+   I + + +  ER +F+LG
Sbjct: 462 ----LIHDIADLYTLQ------TADICRLERMGEKSAENIIQGIERSKEVPYERVLFALG 511

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IR VG  +A+ +AK + S +  A       + N DD   LI V  +G+ IA +I++++ N
Sbjct: 512 IRFVGETVAKKVAKAFRSIEALA-------SANLDD---LIHVDEIGEKIAGSIIQYFAN 561

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            +N   VE  L++    +   E+++S    +++   +V +G   +  R + +  + + G 
Sbjct: 562 EKNRILVER-LRQSGLKLEADEEDLSGYSDKLKGMSIVISGVFARHSRDEYKALIEKHGG 620

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
                +S+KT  I+ GDN G SKLEKAQQL + I +E +FL ++++
Sbjct: 621 KNVGSISKKTSFILAGDNMGPSKLEKAQQLNIPIKDENEFLAMIEE 666


>gi|315502322|ref|YP_004081209.1| DNA ligase, nad-dependent [Micromonospora sp. L5]
 gi|315408941|gb|ADU07058.1| DNA ligase, NAD-dependent [Micromonospora sp. L5]
          Length = 717

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 228/712 (32%), Positives = 373/712 (52%), Gaps = 51/712 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+  ++L QE++ H   YY    P + D+E+D   R  +A+   +P L     P+ P  
Sbjct: 32  ARERHATLSQELTEHQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPAL---RTPDSPTQ 88

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     VTH+   LSL+  +  E+L  +  R+    ++     + +  E K+DG
Sbjct: 89  RVGGTFSTDFTPVTHAERMLSLDNAFADEELAAWSERV----ERDAGGPVPYLCELKVDG 144

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIEVRGEV 191
             I + YEKG+ V AA RGDG +GEDV+A +R+I  +P  L+      ++P++IEVRGE+
Sbjct: 145 LAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIKGVPARLTPAGDFPDVPDLIEVRGEI 204

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G  +   
Sbjct: 205 YFPVAAFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGVGARTGFR 264

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    ++  G P ++  R  +   G+  Y       R  + ++IDG+V KVD  S
Sbjct: 265 PAAQSESYAALKAWGLPTSDRWRVVDDLAGVAEYIAYYGRHRHDVEHEIDGVVVKVDPVS 324

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I+ K+  ++ +T+LLDI++++GRTG +TP A L+PV + G+ +  
Sbjct: 325 IQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRAVLQPVRVAGSTVAY 384

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN         + +V R G  + +GD V++++AG+VIP+V+  +V  R  DA+PF  
Sbjct: 385 ATLHN---------AREVERKG--VLIGDTVVLRKAGDVIPEVLGPVVELRPADARPFVM 433

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C +     L P     V   RC  G AC  Q  ER+ +  SR   +IE LG++ 
Sbjct: 434 PTTCPACGT----PLAPAKESDVDI-RCPNGRACPGQIRERVFYLASRKVLDIEVLGEKG 488

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 ++     I    D+F L   Q + +    N  G    + T L D++ + +   L
Sbjct: 489 AAALLDAQ----IITNEGDLFQLDAEQLSRSPFFVNKDGSLGSNATKLLDNLAEAKERDL 544

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LA+++ S           ++           V  VG  IA 
Sbjct: 545 WRVLVALSIRHVGPTAAQALARHFRSVAAIEAAGEEELSS----------VDGVGPTIAA 594

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKA 666
           ++ E++     +     ++++ + +  R  +  + E    ++   +V TGTL    R +A
Sbjct: 595 SVKEWFA----VDWHRDVVRKWAEAGVRMAEEAADEGPRPLDGITVVVTGTLGGFSRDQA 650

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            E +   G  V+  +S+KT  ++VGDNPGSK +KA  L + I++E+ F  LL
Sbjct: 651 AEAIQVRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKLPILDEDGFRVLL 702


>gi|15835041|ref|NP_296800.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg]
 gi|270285206|ref|ZP_06194600.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg]
 gi|270289225|ref|ZP_06195527.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Weiss]
 gi|301336602|ref|ZP_07224804.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum MopnTet14]
 gi|13626415|sp|Q9PKP2|DNLJ_CHLMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|7190466|gb|AAF39279.1| DNA ligase [Chlamydia muridarum Nigg]
          Length = 660

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 234/702 (33%), Positives = 381/702 (54%), Gaps = 57/702 (8%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L  E+  HD  YY   +P I D  YD   R    I    P+    + P  P   +G   
Sbjct: 11  ALCTELIEHDRRYYVLDRPTISDYSYDMKMRELQKIEAQHPEW---KVPWSPTIYLGDRP 67

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           +     V HS P +S+  ++++E+L +F +R  +           ++LE KIDG  + IR
Sbjct: 68  SGQFPVVPHSHPMVSIANVYSLEELEEFFSRTEKLLGYFPT----YSLELKIDGIAVAIR 123

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE   F  A  RG+G  GED++A +  I ++P  L  + PE +EVRGEV++S   F  LN
Sbjct: 124 YENRTFAQALSRGNGVKGEDITANVSTIRSLPMTLPQDAPEEVEVRGEVFLSYQAFEKLN 183

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
                 G+  +ANPRNAA G L+ L+  +   R L+  ++GL    E      +E L   
Sbjct: 184 ICQREQGKLEFANPRNAAGGTLKLLSSREAAKRNLDLSIYGLITNRE--EHSHFENLGLC 241

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
              GFP+    +Q  T   ++    E++ +RS LP  IDG+V KVD  + Q +LG  ++ 
Sbjct: 242 AHWGFPIAGMPKQCRTKEEVIERIREVEGMRSRLPMAIDGVVVKVDSVAEQHRLGLTSKH 301

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
            RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+NED I+ 
Sbjct: 302 YRWAIAYKYAPERAETILQDITVQVGKTGILTPVAELTPVLLSGSRVSRASLYNEDEIE- 360

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD V V++ GE+IPK+V I + +R PD++P+  PS CP+C + V
Sbjct: 361 ----------KKDIRIGDSVYVEKGGEIIPKIVGINLAKRSPDSKPWKMPSLCPMCHNPV 410

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           +++          + RCT  L C    LE++  F S+ A NI+ LG++ +   F+     
Sbjct: 411 IKER--------VSVRCTNPL-CLGGMLEKICFFASKGALNIDHLGEKVIAKLFE----M 457

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             IR  +D+F L      +   ++ + GF D SV NL  SI   + ++L+RF+ +L I  
Sbjct: 458 GLIRSCSDVFAL------TENDLKQVPGFKDRSVHNLLASIAGAKEVTLDRFLTALSIPF 511

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QN 618
           VG+  A +LA ++ +       ++ ++  + D+ LS   +  +G  +A +I++F+   +N
Sbjct: 512 VGSSGAIALADHFGT-------LDKVMKASLDELLS---IEGIGQKVAASIIDFFSKTEN 561

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
              IC ++ L   + P     + +  + ++ K  V TGTLQ++ R +A+E +  LG  +S
Sbjct: 562 VEEICRMQELGVRILPK----QVDRWAPLQGKIFVLTGTLQEMTRLQAEERIRSLGGKIS 617

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +S+ T  ++VG   GSKL+KAQ+LGV+++ E   L +L Q
Sbjct: 618 SSVSKNTYAVVVGREAGSKLKKAQELGVQVLEESDLLKILNQ 659


>gi|319902123|ref|YP_004161851.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108]
 gi|319417154|gb|ADV44265.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108]
          Length = 665

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 231/709 (32%), Positives = 382/709 (53%), Gaps = 54/709 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++  L  ++  H+  YY  + P I D E+D++ R    +   +P+    +D + P  
Sbjct: 3   AKEKIDQLRADLHRHNYNYYVLNAPEISDKEFDSMMRDLQNLEKEYPEY---QDNSSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKID 135
           ++G ++N +  +V H  P LSL   ++  ++  F  R+     K+  N  F    E K D
Sbjct: 60  RVGSDLNKNFTQVMHKYPMLSLGNTYSENEVTDFYDRV-----KQSLNEDFEICCELKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           GT I++ YE GK V A  RGDG  G+DV+  ++ I TIP +L  N P++ E+RGE+ +  
Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLLLHGNYPKLFEIRGEILMPW 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
             F ALN+E  A     +ANPRNAASG L+  N   + +R L+ +++ L    E+   G 
Sbjct: 175 KSFEALNNEREAREETLFANPRNAASGTLKLQNSAVVASRKLDAYLYYL-LGEELPCNGH 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ     GF ++  +++ ++   I  Y +   + R  L    DG+V KV+    QK 
Sbjct: 234 YENLQMAASWGFKISEHMKKVHSLEEIFEYISFWDTERKNLSVATDGIVLKVNSLKQQKN 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 294 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGTITPVANLDPVQLSGTVVKRASLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +    R     +   F + 
Sbjct: 354 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVNKEARGMLLGEKVKFITH 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C SR++R      G+  AAH C    AC  Q   +++HF+ R A +I+GLG + +D 
Sbjct: 403 CPECGSRLIR----YEGE--AAHYCPNETACPPQIKGKIEHFICRKAMDIDGLGPETVDT 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I+  AD++ L+         I+ +   G+ S  N+ + I   + +  ER 
Sbjct: 457 FYR----LGLIKDAADLYNLK------ADDIKGLDRMGEKSAENIINGITASKEVPFERV 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG  +A+ +AK ++  +  A          N +   LI +  +G+ IA++IV
Sbjct: 507 LFALGIRFVGETVAKRIAKSFIDIEELA----------NANLEVLINIDEIGEKIAKSIV 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ NP N   VE  LK+    + + E+++   +  +  + +V +G      R + +  +
Sbjct: 557 TYFCNPSNRKLVER-LKDAGLQLFQKEEDLNEYTDRLAGQSIVISGVFTHHSRDEYKILI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G   +  +S KT+ I+ G+N G +KLEKA++LG+KIMNE++FL L+
Sbjct: 616 EKNGGKNTGSISAKTNFILAGENMGPAKLEKARKLGIKIMNEDEFLALI 664


>gi|257065343|ref|YP_003145015.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476]
 gi|256792996|gb|ACV23666.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476]
          Length = 708

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 233/726 (32%), Positives = 382/726 (52%), Gaps = 57/726 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A ++   +  + +L +EI +H   YY    P I D+ +D+L R    +  A P      D
Sbjct: 13  AATVSDVKARIDALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELRELELANPQYI---D 69

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P  P  ++GG +      V H++   SL+    +++L +++ R      +   + + F  
Sbjct: 70  PTSPTQRVGGYVGEQFSPVRHAVRMYSLDNAMGLDELDEWLARTL----EAIGHPVQFCC 125

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI----- 184
           E KIDG+ I + YE G    AA RGDG +GEDV+  +R +  IP R+    +  +     
Sbjct: 126 ELKIDGSSIALTYEAGVLTKAATRGDGTTGEDVTVNMRTVRDIPLRLRDDGMAGLRDSDA 185

Query: 185 -IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVH 241
            IEVRGEVY+ K+ F  LN    A G++ +ANPRNAA+G LR+ +P  IT  R L  F++
Sbjct: 186 SIEVRGEVYMPKSSFEKLNAAAEATGKQGFANPRNAAAGSLRQKDPK-ITQNRDLATFLY 244

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +   + I A+ Q ++L+ +R  GF VN  V+  +T   +  +  ++   R +LPY IDG
Sbjct: 245 AIADDAPIRAESQNDLLEWLRDCGFHVNPDVKLCDTPQEVHDFCEQVAEKRDSLPYGIDG 304

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV++F+ Q+ +G  AR+PRW I++KF  ++ +T + DI +Q+GRTG  TPVA L+PV
Sbjct: 305 VVVKVNDFATQRDMGFTARAPRWAIAYKFPPEEKTTVMHDITVQVGRTGACTPVAELDPV 364

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN D ++            +D+R+GD V+V++AG+VIP+++  +++ R
Sbjct: 365 LVDGSTVARATLHNLDEVR-----------RKDVRIGDTVIVRKAGDVIPEILGPVLSLR 413

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              A+P+  P+ CP C S +VR+         AA RC   + C AQ +ERL H+ SR A 
Sbjct: 414 PEGAKPWEMPATCPSCGSPLVREEGE------AAFRCV-SIDCPAQAMERLIHWASRGAM 466

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS--TTKIE---NILGFGDVSVT 536
           +I+G+G + +    +S      +   AD + L      +  T +I      +  G     
Sbjct: 467 DIDGMGDEIVARLVES----GRVLDVADYYNLTEYDLATLETGRINKEGEPIHLGGTIAA 522

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            L  S+   ++ +  R +F LGIRHVG     ++A  Y S +                  
Sbjct: 523 KLMASLEASKSRTFARVLFGLGIRHVGKTTGEAIAAAYPSMEKLMNATEE---------- 572

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFT 655
            L +V  +G +IA++IV F     N   +  L +  V+ +    E ++   +     V T
Sbjct: 573 GLAQVDGIGAVIAKSIVTFLATEDNREVIHRLERAGVTMADEVKESDIPQTLAGITFVLT 632

Query: 656 GTLQK--IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           G+L +  + R +A + +  +GA VS  +S+KT  ++ G+  GSK +KA QLGV ++ E +
Sbjct: 633 GSLTESGMTRTEAGDRLKAMGAKVSGSVSKKTGYVVAGEAAGSKYDKAVQLGVPVLTEAE 692

Query: 714 FLFLLQ 719
           FL LL+
Sbjct: 693 FLRLLE 698


>gi|317477010|ref|ZP_07936252.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906803|gb|EFV28515.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA]
          Length = 666

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 237/709 (33%), Positives = 375/709 (52%), Gaps = 55/709 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L  ++  H+  YY  + P I D E+D + R    +    P+    +D N P  +
Sbjct: 4   KERIDQLRTDLHRHNYNYYVLNTPEISDKEFDDMMRELQDLEKEHPEY---QDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136
           +G ++N +  +VTH  P LSL   ++  ++  F  R+     KK  N  F    E K DG
Sbjct: 61  VGSDLNKNFTQVTHKYPMLSLGNTYSENEVTDFYDRV-----KKALNEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL   N PE  E+RGE+ +  
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNNYPEHFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L    E+   G 
Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ     GF ++   ++ ++   +  Y     + R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQTAAGWGFKISEHTKKTHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKS 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAITPVANLDPVQLSGTIVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + 
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITH 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++VR      G+  AAH C    AC  Q   +++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDT 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I+  AD++      Q +   I+N+   G+ S  N+   I   + +  ER 
Sbjct: 458 FYR----LGLIKDTADLY------QLTAEDIKNLDRMGEKSAENIIKGIKASKEVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG  +A+ +AK +          NNI    N D   L  +  +G+ IAQ+I+
Sbjct: 508 LFALGIRFVGETVAKKIAKSF----------NNIEELENADLEKLTSIDEIGEKIAQSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ +P N+  +E  LK     + R E+++   + ++  + +V +G      R + ++ +
Sbjct: 558 IYFSSPLNVNLIER-LKSAGLQLYRKEEDLNEYTDKLAGQSIVISGVFTHHSRDEYKDLI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ G+N G SKLEKA +LG+KI++E++FL L+
Sbjct: 617 EKNGGKNVGSISTKTSFILAGENMGPSKLEKAHKLGIKIISEDEFLTLI 665


>gi|213968905|ref|ZP_03397045.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
 gi|301385372|ref|ZP_07233790.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063632|ref|ZP_07255173.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato K40]
 gi|302133897|ref|ZP_07259887.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926204|gb|EEB59759.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
          Length = 787

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 224/633 (35%), Positives = 343/633 (54%), Gaps = 50/633 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+ + IT  R L F  +GLG
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLG 236

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+
Sbjct: 237 QTSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVF 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + 
Sbjct: 297 KVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   
Sbjct: 357 GVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPET 405

Query: 425 AQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSR 478
           A+P   P  CP+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR
Sbjct: 406 AKPVEVPQSCPVCGSHVERTQLVKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSR 465

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L
Sbjct: 466 RAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKL 515

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +        
Sbjct: 516 LKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY-------- 567

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             +P VG  +A  I  F+++  N   +EALL E
Sbjct: 568 --LPDVGLEVAYEIHSFFEDEHNRNVIEALLGE 598



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  +            + A  + DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRF----------GTLEAVISADWLDMRQT--LPE 663

Query: 607 IIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+    N     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDNANAERARAIEAQLKD----FGMHWRSEKKAVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++EE  L  L
Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEEALLKRL 779

Query: 719 QQYNTTL 725
            +    +
Sbjct: 780 TELGVAV 786


>gi|313159317|gb|EFR58681.1| DNA ligase (NAD+) [Alistipes sp. HGB5]
          Length = 694

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 228/705 (32%), Positives = 378/705 (53%), Gaps = 51/705 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+ +  L +++ YH+  YY  + P I D E+DA+ R    +  A P++A   DPN P  +
Sbjct: 3   RERIEELRRQLEYHNFRYYVENAPEISDFEFDAMMRELQDLERAHPEMA---DPNSPSVR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++      V H  P LSL   ++ ++L +FI RI     +K+     F  E K DGT
Sbjct: 60  VGSDITAEFRSVKHRFPMLSLGNTYSPDELHEFIERI-----EKETGPTEFVCELKFDGT 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++ YE G+ + A  RGDG  G+DV+A +R + T+P R+   + P+  E+RGE+ +   
Sbjct: 115 AISLTYEHGRLLRAVTRGDGTQGDDVTANVRTVRTVPLRLRGDDWPDYFEIRGEILMPYA 174

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQY 255
            F  +N E  A G   +ANPRNAA+G L++     + R  L+  ++ L      F    +
Sbjct: 175 SFDKINAEREAAGETLFANPRNAAAGTLKQQASAVVARRGLDCTLYQLAGDDLPFTN-HW 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQK R  GF +++ +R   +   I +Y       R  LP+  DG+V KV++F +++QL
Sbjct: 234 ESLQKAREWGFKISDQMRICRSAEEIDAYIAHWDEARRELPFPTDGVVIKVNDFGVRRQL 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++P+W +++KF  +QA TRL  +  Q+GRTG +TPVA LEPV + G  +  ATLHN
Sbjct: 294 GFTAKAPKWAVAYKFKAEQALTRLDSVAFQVGRTGAITPVANLEPVLLAGTTVRRATLHN 353

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            + +  L           DIR GD V V++ GE+IPK+  + +++R  D++PF + + CP
Sbjct: 354 AEQMALL-----------DIRPGDMVYVEKGGEIIPKITGVELSQRPADSRPFEYITVCP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +V+      G+  A H C     C  Q + R+ HF+ R A +IEGLG++ ++  +
Sbjct: 403 ECGTPLVK----YEGE--AKHYCPNQGGCRPQIIGRIIHFIRRKAMDIEGLGEETVELLY 456

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           ++      +R  AD++ LQ  Q     ++      G+ S  N+  SI     +   R +F
Sbjct: 457 ENG----LVRDVADLYDLQAPQLACLPRL------GEKSADNIIRSIRGSVEVPFRRVLF 506

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR VG   A+ LA+++ S       ++ ++    ++   L     VG  IA AI+E+
Sbjct: 507 GLGIRFVGETTAKYLAEHFRS-------LDAVMKATREE---LTEADEVGGRIADAIIEY 556

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           + + +N+ A+   L++         + ++SE +  K  V +G      R + +E +   G
Sbjct: 557 FADEKNL-AIIRRLRDAGVKFEAEARELASESLAGKSFVISGKFSNHSRDELKELIEIHG 615

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
               A +S   D I+ G+N G +KL+KA++LGVKI++EE F+ ++
Sbjct: 616 GRNLAAVSANVDYIVAGENMGPAKLKKAEKLGVKIISEEDFIAMI 660


>gi|86742328|ref|YP_482728.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
 gi|123750794|sp|Q2J6U3|DNLJ_FRASC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86569190|gb|ABD12999.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
          Length = 706

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 236/707 (33%), Positives = 361/707 (51%), Gaps = 60/707 (8%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           SL +E+  H   YY    P I D+EYD L     A+    PDL     P+ P  K+ G  
Sbjct: 28  SLARELDEHAYRYYVLDSPTISDAEYDRLMAELAALEERHPDL---RTPDSPTQKVAGSY 84

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           +     V H    LSLE +++ ++  ++  R+ R     +     +  E KIDG  + + 
Sbjct: 85  STLFTPVEHLERMLSLENVFDDDEFHQWAARVAR-----ESEVDAWLCELKIDGLAVDLV 139

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLAL 201
           YE G  V AA RGDG +GED++  IR + ++P R+    +P ++EVRGEV+     F  L
Sbjct: 140 YEDGYLVRAATRGDGRTGEDITPNIRTLASVPVRLRGPRVPGLLEVRGEVFFPTAKFAEL 199

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           N  ++AVG KP+ANPRNAA+G LR+ +P    TR L   VHGLG         Q     +
Sbjct: 200 NAGLVAVGGKPFANPRNAAAGSLRQKDPRVTATRPLEMIVHGLGAQRGFEVTSQSAAYAR 259

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
              LG PV        T  G++ Y +     R  + ++IDG+V KVD F+LQ++LG  ++
Sbjct: 260 FAELGLPVATHFEVLATVPGVLDYVHRWGDARHDVVHEIDGVVVKVDSFALQRRLGSTSK 319

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           SPRW +++K+  ++ +T+L DI + +GRTG +TP   LEPV + G+ +  ATLHN D + 
Sbjct: 320 SPRWAVAYKYPPEEVTTKLRDIRVNVGRTGRVTPFGELEPVLVAGSTVGLATLHNIDEV- 378

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                     G + + +GD V++++AG+VIP++V  +V+ R    + F  P+ CP C + 
Sbjct: 379 ----------GRKGVLIGDTVVLRKAGDVIPEIVGPVVDLREGSERAFVMPTRCPECGTE 428

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +VR   P+    +   RC   ++C AQ  E + HF SR A +I+GLG +      +    
Sbjct: 429 LVR---PEGEVDI---RCPNTVSCPAQLRESIFHFASRGAMDIDGLGYETATALLE---- 478

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
           A  +R   DIF L      +    E + GF    +  +   +   R+  L R +  L IR
Sbjct: 479 AGRVRDIGDIFHL------TPESFEGLRGFAQKKIDQILRGVEAARHRPLWRLLVGLSIR 532

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG   AR+LA+   S +  A       A + +D   L  V  VG  IA A+++++ + R
Sbjct: 533 HVGPTAARALARELRSLEAIA-------ATSAED---LAAVEGVGPKIAGAVLDWFADER 582

Query: 621 N------ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +      I A  A L +V    G         ++   +V TGTL    R  A+E V   G
Sbjct: 583 HRDILARIAAGGARLADVGAEEG------PRPLDGVTVVITGTLTDWSRDSAKEAVEARG 636

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
             V+  +SRKT  ++VG +PG SK +KA+ L + +++E  F  LL Q
Sbjct: 637 GKVTGSVSRKTTAVVVGADPGASKYDKARSLRIPMLDEAGFAVLLAQ 683


>gi|77458028|ref|YP_347533.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf0-1]
 gi|123731132|sp|Q3KFB2|DNLJ_PSEPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77382031|gb|ABA73544.1| DNA ligase [Pseudomonas fluorescens Pf0-1]
          Length = 785

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/631 (34%), Positives = 341/631 (54%), Gaps = 56/631 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A+  +  L  E+  H+  Y+   +P I D+EYD L     A+  A P+L  S+ P     
Sbjct: 4   AKDRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITSDSPT---Q 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130
           ++G     +  +V H +P LSL   +   D+R+F  R+         +      ++ ++ 
Sbjct: 61  RVGSVALTAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPAGDLFGGGAAVEYSC 120

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           EPK+DG  +++ Y+ G  V  A RGDG +GED+S  +R +  IP ++     P  +EVRG
Sbjct: 121 EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLEVRG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247
           EV++SK  F  LN   + VG K +ANPRNAA+G LR+L+ + IT  R L F  +G+G+ S
Sbjct: 181 EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGIGQVS 239

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              +      LQ+++  G P+++ ++ A      + YY ++   R++L Y+IDG+V+KV+
Sbjct: 240 HDISDTHIGNLQQLKAWGMPISHELKLAKGIGECLDYYRDIGERRNSLAYEIDGVVFKVN 299

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G  
Sbjct: 300 SIADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVT 359

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           + NATLHN D +  L            + +GD V+++RAG+VIP+VV +++  R  DA+P
Sbjct: 360 VANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVMERRPEDARP 408

Query: 428 FSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAF 481
              P  CP+C S V R   +    GK      A +RC G LAC AQ  + + HFVSR A 
Sbjct: 409 VQIPESCPVCGSHVERTQLVKRSKGKETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAM 468

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNL 538
           +IEGLG + ++      D    +  PAD++ L         K E+I+   GF +VS   L
Sbjct: 469 DIEGLGDKSVEQLV---DEGL-VSSPADLYAL---------KFEDIVDLEGFAEVSSNKL 515

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   +   L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +        
Sbjct: 516 LAAIEDSKKPGLARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQVLTY-------- 567

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
             +P +G  +A  I  F+++  N   +  LL
Sbjct: 568 --LPDIGLEVAHEIHSFFEDAHNRQVITELL 596



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 18/183 (9%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L  F+  L I  VG   A+ LA  + S +             N DWL + +   + +
Sbjct: 615 STTLGGFLDKLHIPSVGPGGAQKLADKFESLEGVM----------NADWLDMRQA--LPE 662

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKI 661
             A ++ EF+  P +    E   K++    G H ++    +E   L     V TG ++ +
Sbjct: 663 KQANSVREFFALPEHRQLAEDAEKQLR-DFGMHWQSEKKVVEGLPLAGETWVLTGKVELM 721

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A+E++  LGA V+  +S KT  ++ G   GSKL KA +LGVK+M+EE F+  L+ +
Sbjct: 722 SRDVAKEHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVMDEEAFIAFLKGH 781

Query: 722 NTT 724
             +
Sbjct: 782 GIS 784


>gi|282856148|ref|ZP_06265431.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455]
 gi|282585907|gb|EFB91192.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455]
          Length = 681

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 239/703 (33%), Positives = 369/703 (52%), Gaps = 58/703 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E++ H   YY    P I D EYDAL R         PDL R + P+    ++GG + 
Sbjct: 15  LVDELNRHGRLYYVLDAPEIEDDEYDALMREMLQFEREHPDLIRDDSPS---KRVGGAVL 71

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITR----IYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +  KVTH+ P LSLE +++  +L  ++ R    + + W       I +  E KIDG  +
Sbjct: 72  DAFEKVTHAKPMLSLEDVFSKNELHDWLQRAAEGVGQPW-------IPWCCELKIDGLAV 124

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ +E GKFV A+ RGDG  GEDV+  ++ +  +P  L  ++P  +E+RGEVY+ K+ F 
Sbjct: 125 SLIFEDGKFVQASTRGDGVVGEDVTENLKTVKDLPLRLLGDVPGHLELRGEVYMGKDGFA 184

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN      G   +ANPRNAA+G LR+L+ +    R L  F + +          Q E+L
Sbjct: 185 QLNAAREEAGLPLFANPRNAAAGSLRQLDTSVAAKRNLRLFTYYVQDAESYGLHSQSEIL 244

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + ++  G PV    R+A T    + +       R +LPY  DG V+K D       LG  
Sbjct: 245 EWLKARGLPVQKAWRRAETETEALDFLERWSGERFSLPYATDGAVFKADATEYWTVLGNN 304

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++PRW +++K+  ++  T+L  I+I +GRTG+LTPVA LEPV + G ++  A+LHN++ 
Sbjct: 305 VKTPRWAVAYKYPPEERKTKLESIEISLGRTGVLTPVANLEPVLLSGTVVKRASLHNDEE 364

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+            +DIRVGDRV V++AGE+IP++V + V  R    +PF+ P+ CP+C 
Sbjct: 365 IQ-----------RKDIRVGDRVWVRKAGEIIPEIVRVDVASRTGTEEPFAMPATCPVCG 413

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + V +      G++  A RC    +C AQ  + L HF SR   NI+GLG +  +   +S 
Sbjct: 414 AAVAK----LPGEV--ALRCL-NRSCPAQLTQGLIHFASRQGMNIQGLGDRLAEQLVRSG 466

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++  +D++ L+        ++      G+ S   L  +I K +   L+  I +LG
Sbjct: 467 ----LVKNFSDLYALRVEPLVRLDRM------GEKSAGKLLQAIAKSKERPLKFLITALG 516

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IR VGA +A  LAK + S       ++ I A + +    L  V  VG +IA +I  F+  
Sbjct: 517 IREVGAGVAAELAKRFSS-------LDEIAAADEE---RLAAVEGVGPVIAGSIKTFFGE 566

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEI---ENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             N   ++  L+E   S+ R E    + I     K  VFTG L ++ R +AQE VTQ G 
Sbjct: 567 EHNRRLIDG-LREAGVSM-RSETAPEAPIGPLAGKTFVFTGELSRMSRAQAQELVTQRGG 624

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
                +S+KT  ++VG+ PG K EKA +L V  +NEE+F  ++
Sbjct: 625 KSVNSVSKKTSYVVVGEAPGGKAEKALRLNVPTLNEEEFFAMI 667


>gi|332705189|ref|ZP_08425270.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L]
 gi|332355932|gb|EGJ35391.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L]
          Length = 1092

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 241/742 (32%), Positives = 382/742 (51%), Gaps = 84/742 (11%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + Q  +EL  L Q  SY    YY    PI+ D+ YD L R    +   +P+L  S+ P  
Sbjct: 8   VNQRIQELRRLLQNASY---AYYVLDNPIMADAIYDQLYRELQELETEYPELVTSDSPT- 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------ 127
              ++G +       V H+IP  SL+  +N+E+  ++  R    WQ+     I       
Sbjct: 64  --QRVGEKPATGFVSVRHNIPLYSLDNAFNLEEFSQWQER----WQRHISGDISQDSGFN 117

Query: 128 --FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----- 180
             +  E KIDG+ + + YE G  V    RGDG +GED++  +R I +IP  L+L+     
Sbjct: 118 TEYVCELKIDGSALALTYENGILVRGVTRGDGSTGEDITQNVRTIRSIPLRLNLDQLNLD 177

Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNF 238
            +P ++EVRGE ++  + F  +N E    G   +ANPRNAA+G LR+L P  +  R L F
Sbjct: 178 QLPALVEVRGEAFLPLDVFERINQERAQAGEPLFANPRNAAAGTLRQLEPRIVAKRQLAF 237

Query: 239 FVHGL----GKTSEIFA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
           F + L      +SE +       Q++ L+ ++ LGFPVN   +   +   +  YYN   +
Sbjct: 238 FAYTLHIPNQDSSEEYTIPMPNCQWDALELLQKLGFPVNPHRQCCASLQDVQDYYNYWDA 297

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  LPY  DG+V K++ F +Q+QLG   + PRW I+ K+  ++A +R+  I + +GRTG
Sbjct: 298 RRQDLPYLTDGVVVKINAFGIQQQLGFTQKFPRWAIALKYPAEEAPSRVEAITVNVGRTG 357

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TP+A LEPV + G  +  A LHN DY+  L           D+RVGD V+V++AGE+I
Sbjct: 358 AVTPLAILEPVQLAGTTVQRAALHNGDYVAQL-----------DLRVGDTVIVRKAGEII 406

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+VV ++   R   A+PF  P+ CP+C   +VR   PK G+  A  RC    +C A    
Sbjct: 407 PEVVRVLPELRPDHAKPFEMPTHCPVCSQPLVR---PK-GE--AVTRCINS-SCPAIVKG 459

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            L H+ SR+A +I GLG++ ++      D      + AD++ L   Q  S  ++ + L  
Sbjct: 460 TLTHWASRNALDINGLGEKIVEQLV---DQGLVTSV-ADLYDLTLDQLVSLERMGHKLA- 514

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ----EINN 586
                  L ++I K +     R ++ LGIRHVG+  A++L + + + +  AQ    +I  
Sbjct: 515 -----QKLLNAIAKSKTQPWSRVLYGLGIRHVGSVNAQTLVQTFPTIEQLAQATVTDIEG 569

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
           I                +G  IAQ++  ++Q   N   + A L+E    +    K ++ +
Sbjct: 570 IYG--------------IGPEIAQSVWGWFQISSNQTLI-ARLREAGLQLEASTKTIALD 614

Query: 647 ----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
               +  K  V TGTL  ++R  A++ +   G  V++ +S KTD ++VG++ GSKLEKAQ
Sbjct: 615 QTQPLTGKTFVITGTLPTLKRSDAKDLIQNAGGKVTSAVSAKTDYLVVGEDAGSKLEKAQ 674

Query: 703 QLGVKIMNEEQFLFLLQQYNTT 724
           +LG+  + E Q L   Q++  T
Sbjct: 675 KLGITQLTESQLLVKSQKFPAT 696



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 123/255 (48%), Gaps = 33/255 (12%)

Query: 472  LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
            L H+ SR A +I GLGK+ ++      D      + AD++ L   Q  S        G G
Sbjct: 863  LTHWASRYALDINGLGKKIVEQLV---DQGLVTSV-ADLYNLTLEQLVSLN------GIG 912

Query: 532  DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ----EINNI 587
                  L ++I K +     R ++ LGIRHVG+  A++L + + + +  AQ    +I  I
Sbjct: 913  HKLAQKLLNAIAKSKTQPWSRVLYGLGIRHVGSVNAQTLVQTFPTIEQLAQATVTDIEGI 972

Query: 588  IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---- 643
                            +G  IAQ++  ++Q   N   + A L+E    +    K +    
Sbjct: 973  YG--------------IGPEIAQSVWGWFQISSNQTLI-ARLREAGLQLEASTKTIALDK 1017

Query: 644  SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
            S  +  K  V TGTL  ++R  A++ +   G  V++ +S KTD ++VG++ GSKLEKAQ+
Sbjct: 1018 SLPLTGKIFVITGTLPTLKRSDAKDLIQNAGGKVTSAVSAKTDYLVVGEDAGSKLEKAQK 1077

Query: 704  LGVKIMNEEQFLFLL 718
            LG+  + E Q L LL
Sbjct: 1078 LGITQLTESQLLDLL 1092



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 28/171 (16%)

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
           LA +  Q   L H+ SR+A +I GLGK+ ++      D      + AD++ L   Q  S 
Sbjct: 704 LAGTKVQQRALTHWASRNALDINGLGKKIIEQLV---DQGLVTSV-ADLYDLTLEQLVS- 758

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                + G G      L ++I K +     R ++ LGIRHVG++ A++LAK + + +  A
Sbjct: 759 -----LKGIGYKLAQKLLNAIAKSKTQPWSRVLYGLGIRHVGSDKAKTLAKKFRNIEQLA 813

Query: 582 Q----EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           Q    +I  I +              +G  IA+++ +++QN  N   ++ L
Sbjct: 814 QATIPDIEGIYS--------------IGPKIAKSVRDWFQNSSNQTLIDRL 850


>gi|218961271|ref|YP_001741046.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans]
 gi|167729928|emb|CAO80840.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans]
          Length = 667

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 238/713 (33%), Positives = 380/713 (53%), Gaps = 59/713 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +  +  L  EI +H+  YY  +KP I D EYD L +    +   + + A  E P    
Sbjct: 5   ELKARIDRLRAEIEHHNRLYYTLAKPEISDYEYDMLVKELQELEAQYAEGAVEESPT--- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G ++      + H +   SLE  +++E++  FI R         +    +  E KID
Sbjct: 62  QKVGSDLTPGAKTIPHKVRMASLENAYSLEEVLAFINRTNNDLGYASE----YCAELKID 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + YE G F+YA  RGDG  GEDV+   R +P +P   +++    IE+RGE+YI  
Sbjct: 118 GFSINLYYENGNFIYATTRGDGLEGEDVTENFRLLPDVP--FTIDYKGAIEIRGEIYIPV 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK-------TS 247
            DFLALN+       K +ANPRNAA+G ++  +  ++ +R+L    + LG         +
Sbjct: 176 QDFLALNEFRRENELKTFANPRNAAAGSIKLKSREEVKSRHLKALFYALGYYETPLQYKN 235

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           EI  K Q  +L  +  LGFP +        +     +  +M+  R T+PYDIDG+V KV+
Sbjct: 236 EIIDK-QTRLLDFLDELGFPTSKRTL-CKHYQEAEKFCLQMEQERYTIPYDIDGIVIKVN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               QK+LG  A+SP+W I++KF  ++  T L  +  Q+GRTG +TPVA L+PV I G+ 
Sbjct: 294 SLEDQKKLGWTAKSPKWAIAYKFKPEEKETVLESVSFQVGRTGAVTPVANLKPVFISGST 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +++ATLHN D IK L           D+  GD VLV ++GE+IPK++ + V++R  +A+P
Sbjct: 354 VSHATLHNADEIKRL-----------DLHYGDTVLVVKSGEIIPKILSVNVSKRPVNAKP 402

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FP+ CP+C + + RD +        A+       C AQ   +L+HF SR+A +I GLG
Sbjct: 403 VIFPATCPVCNAPLQRDEDGSINYCPNAN-------CPAQIQRKLEHFASREAMDIYGLG 455

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +    ++      I+   DI+ L         KI  +   G  S  NL  +I   + 
Sbjct: 456 SSLIARLIETG----QIKWIPDIYHL------DYNKIAEMERMGKKSADNLQKAIEASKT 505

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            + +R +F+LGIRH+G+  AR+LA+++       + I+ +I    ++ LS   VP +G I
Sbjct: 506 KNFDRVLFALGIRHIGSITARTLAQHF-------KNIDALIMAKEEELLS---VPDIGSI 555

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA++I+ F+    N   +++ L++V           S+ +  K  + TGTL    R   +
Sbjct: 556 IARSIIGFFSQKSNRELIDS-LRKVGLQFTYISPQSSAILAGKTFLITGTLPNYSRKDME 614

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
             +T+ G  + + +S++ + +IVG+NPGSKL+KA QLG VKI++E + L +LQ
Sbjct: 615 TLITEHGGKILSGVSKQLNYLIVGENPGSKLDKAHQLGTVKIISEAELLDMLQ 667


>gi|226357440|ref|YP_002787179.1| NAD-dependent DNA ligase [Deinococcus deserti VCD115]
 gi|254778147|sp|C1D1Y6|DNLJ1_DEIDV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|226319430|gb|ACO47425.1| putative NAD-dependent DNA ligase [Deinococcus deserti VCD115]
          Length = 686

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 238/707 (33%), Positives = 364/707 (51%), Gaps = 51/707 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L Q+++ H+  YY+   P I D EYDAL R    +    P+ A    P  P   +GG  +
Sbjct: 14  LTQKVAEHNRRYYEEDAPTIPDFEYDALVRELRELEARHPEFAA---PTSPAQTVGGRPS 70

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITIR 142
               KV H  P  SL+  ++  +L  F  ++ R       +  F +T E KIDG  I + 
Sbjct: 71  TLFEKVRHPTPMTSLDNAFSDAELAHFDDKVARALNLPPGSRTFTYTCELKIDGLSINLY 130

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           Y  G   +AA RGDG  GE V+A I  IP IP  L   +   +EVRGEVY+SK  FLA N
Sbjct: 131 YVDGILQWAATRGDGEVGEKVTANIEGIPGIPTQLP-GLQGELEVRGEVYMSKATFLAYN 189

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKM 261
            +    GR    NPRN A+G LR+ +P +  R  L   ++ LGK   +  + Q+++L+ +
Sbjct: 190 LKAEEEGRPLLKNPRNGAAGALRQKDPAETRRRGLEVILYALGKRDGVPVRTQWDILEWL 249

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           R  GF  +   R+        +Y+ EM + R  LP+D DG V K+D+  LQ+  G  +R+
Sbjct: 250 RAQGFATSEYARRVTGSEAAAAYHAEMTAQRPQLPFDADGSVVKLDDLRLQEDAGYTSRA 309

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           P+W +++KF    A T +  I IQ GRTG LTPVA L PV + G  +  ATLHNED+I+G
Sbjct: 310 PKWAVAYKFPADVAQTVIEAITIQTGRTGKLTPVAELRPVLLEGTTVARATLHNEDFIRG 369

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
           L           D+ VGD V V ++G +IP+V+ +++ +R   + P++FP+ CP+C    
Sbjct: 370 L-----------DLHVGDTVRVHKSGGIIPEVLGVVLEQRPEGSTPYAFPTHCPVCGHEA 418

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           VR          A   CT   AC A+   R+++F SRD  +I+GLG++ ++        A
Sbjct: 419 VRHEG------AAGTFCT-NPACPAKSTLRVRYFASRDVMDIKGLGERLVEQLVD----A 467

Query: 502 FSIRIPADIFTLQRRQ----QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
             +R PAD++ L   Q    +   T    +   G  +   L   I   +   L R   SL
Sbjct: 468 GLVRDPADLYALTAEQIEHLEMGETTTGGVRRVGRKNAEKLVAEIEASKTRELWRVFRSL 527

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+ +VG   A  +A+ Y S ++  Q        + DD   L R+P VG  +A+ IV+  +
Sbjct: 528 GLPYVGEGTATRIARVYRSLEDIRQA-------SVDD---LARIPDVGRQVAEGIVQGLR 577

Query: 618 NPRNICA----VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +  ++CA    + A   + +PS+   +  V  ++     V TGTL  + R   + ++ Q 
Sbjct: 578 D-ADMCAYLDRLTAAGVQPTPSV---DVRVGEQLAGLTFVVTGTL-SVPRDVIKLHLGQY 632

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           GA VS  +++KT  +I G++ GSKLEKA +L V +++E     LL +
Sbjct: 633 GARVSGSVTKKTSYLIAGEDAGSKLEKATELKVPVLDEAGLQKLLAE 679


>gi|149911742|ref|ZP_01900348.1| NAD-dependent DNA ligase [Moritella sp. PE36]
 gi|149805167|gb|EDM65187.1| NAD-dependent DNA ligase [Moritella sp. PE36]
          Length = 482

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/507 (41%), Positives = 297/507 (58%), Gaps = 36/507 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQA K++ +L  ++  ++  YY    P + D+EYD L R    +   FP+LA +     P
Sbjct: 3   EQA-KQIQTLTLQLEEYNHQYYVLDNPTVPDAEYDRLLRELKQLETEFPELALA---TSP 58

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPK 133
             K+GGE      ++ H IP LSL+ +++ E+L  F  R+  R   K +   I F+ EPK
Sbjct: 59  TQKVGGEALTGFSQIQHEIPMLSLDNVFSAEELLAFEKRLQDRLLTKAE---IKFSCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G FV AA RGDG  GED+S  ++ I +IP R+   + PE +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVFVRAATRGDGQIGEDISENVKTIKSIPLRLRGNDFPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIF 250
           + K  F  LN      G K + NPRNAA+G LR+L+P    +R L F  + LG    E+ 
Sbjct: 176 MPKAGFDLLNVNAKKKGEKTFVNPRNAAAGSLRQLDPKIAASRPLAFNAYSLGVVEGEVE 235

Query: 251 AKG----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            KG      E LQK++  G PV   V  A  + G + +Y ++   R +L YDIDG+VYKV
Sbjct: 236 GKGLSNSHAENLQKLKLWGIPVCADVTVAMGYQGCLDFYEQIGERRDSLSYDIDGVVYKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQK LG  AR+PRW  SHKF  ++  T LLD++ Q+GRTG +TPVARLEPV +GG 
Sbjct: 296 DDLALQKTLGFVARAPRWATSHKFPAQEEITTLLDVEFQVGRTGAITPVARLEPVFVGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I  L            I++ D+V+++RAG+VIP+V  +++  R  DAQ
Sbjct: 356 TVSNATLHNSDEIARL-----------GIKIKDQVIIRRAGDVIPQVARVMLERRPDDAQ 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP+ CP+C S V R     T       RCT GL C AQ+ E +KHF SR A N++GL
Sbjct: 405 DIVFPATCPVCDSEVERIEGEAT------VRCTAGLYCGAQRKEAIKHFASRKALNVDGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTL 513
           G + ++    ++     I+ PAD+FT+
Sbjct: 459 GDKLVEQLVDAD----LIKTPADLFTV 481


>gi|60681965|ref|YP_212109.1| putative DNA ligase [Bacteroides fragilis NCTC 9343]
 gi|81314971|sp|Q5LCI0|DNLJ_BACFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|60493399|emb|CAH08185.1| putative DNA ligase [Bacteroides fragilis NCTC 9343]
          Length = 665

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 235/707 (33%), Positives = 373/707 (52%), Gaps = 52/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  ++  H+  YY  + P I D E+D L R    +    P+    +D N P  +
Sbjct: 4   KEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL   N PE+ E+RGE+ +   
Sbjct: 117 SISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F ALN E  A     +ANPRNAASG L+  N   + +R L+ +++ L     +   G Y
Sbjct: 177 VFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    Q+ L
Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + CP
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R      G+  AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++      Q +T  I  +   GD S  N+   I + + +  ER IF
Sbjct: 459 R----LGLIHDTADLY------QLTTDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVIF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +           +I    N D  +LI +  +G+ IA++I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSF----------KDIEELENADLETLINIDEIGEKIARSILNY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + N  N   V+  LK     + R E+++S    ++  + +V +G      R + ++ + +
Sbjct: 559 FANESNRKLVDR-LKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 618 HGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|83816597|ref|YP_445022.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855]
 gi|123739757|sp|Q2S459|DNLJ_SALRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83757991|gb|ABC46104.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855]
          Length = 690

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/699 (31%), Positives = 379/699 (54%), Gaps = 51/699 (7%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + +H+  YY    P++ D+EYD L ++   +   +P L   + P+ P +++GG +   L 
Sbjct: 32  LRHHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPVL---QTPDSPTHQVGGPVRDELG 88

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            VTH  P LSL+ ++  +++R F         ++   ++ +  EPK DG  + + YE G+
Sbjct: 89  TVTHPAPMLSLKAVYEEDEVRNFAETCREELGRE---TVTYIAEPKFDGLAVELIYEDGR 145

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            V  A RGDG +GE+++A ++ I  +P   R  +  +P+ + VRGE Y+ K++F A N  
Sbjct: 146 LVQGATRGDGETGEEITANVKTIKGVPLRLRDDARPVPDRLVVRGEAYMRKDEFNAFNRR 205

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
               G+K +ANPRNAA+G LR+L+ ++IT  R L  + + +            E+L+ + 
Sbjct: 206 REEEGKKVFANPRNAAAGSLRQLD-SNITARRPLRIYFYEIAPVDGRDFATHAEVLEALP 264

Query: 263 CLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             G  V  + +R+ +     ++++  +   R  LPY+IDGLV KV++F   + LG R R 
Sbjct: 265 EWGLRVCEDHIRRCDGIDAALAHHAALVDRRDDLPYEIDGLVIKVNDFDGHETLGVRDRD 324

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW  ++KF  ++A+T + D+ +Q+GRTG +TPVA L PV +GG  +T A+LHN++ I  
Sbjct: 325 PRWAAAYKFPPRRATTSIEDLFVQVGRTGRITPVAVLAPVEVGGVEVTRASLHNQNEID- 383

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD VL++RAG+VIP+VV +I +ER     P+  P  CP+C S V
Sbjct: 384 ----------RKDIRIGDTVLIERAGDVIPQVVKVIEDERDGTEAPYHIPDACPVCGSEV 433

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           V   + K         CTGG+ C AQ  ERLKH+ SR+A +IEGLG ++ +        A
Sbjct: 434 VLSDDKKQAF------CTGGMTCPAQFRERLKHYASREATDIEGLGDKRAEQLID----A 483

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I+  +D++ L++        +  +  + D S  NL D I       L+RF+++LGI  
Sbjct: 484 GLIQTISDLYELEK------ADLLQLERYADKSAQNLIDEIEASLEQDLDRFLYALGIPL 537

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG+  AR LA+++          + + A  + D  +L  +  +G  +A +I  F+ +  N
Sbjct: 538 VGSATARLLAQHF----------DTLDALVDADEDALTTIDDIGPEVAHSIATFFADDAN 587

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              ++  +++   ++       ++ +E    VFTG+L+   R   Q +V Q GA  ++ +
Sbjct: 588 RGVIDE-MRDAGLTLTNPYAEDAARLEGLTFVFTGSLEGWTRSAVQRFVEQHGANATSSV 646

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S  TD ++ G   GSK + A   G+ +++E+ F  LL++
Sbjct: 647 SGNTDYVVAGPGAGSKRDDADDRGIPVLDEDAFHALLRE 685


>gi|289649545|ref|ZP_06480888.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 787

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 335/623 (53%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEVENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+         +       + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P+++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV+  +  AN     + YY ++   R TL Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLETLKKWGMPVSRELNLANGVEECLDYYRDIGERRLTLNYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+    P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  +I   R  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P VG  +
Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  + +       +  II+    DWL +     + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRHT--LPE 663

Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+ +  +     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 720 ERMSRDVAKEKLETLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779

Query: 719 QQYNTTL 725
            +    +
Sbjct: 780 TELGVAV 786


>gi|3800758|gb|AAC68862.1| thermostable DNA ligase [Thermus filiformis]
          Length = 667

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 249/719 (34%), Positives = 393/719 (54%), Gaps = 69/719 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+AR+ ++ L   I YH+  YY  + P I D+EYD L R    +   FP+    + P
Sbjct: 1   MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEF---KSP 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G       F+ V H     SL+  +  E++  F  R+ R  +        +T+
Sbjct: 58  DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERLAEAPS----LYTV 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V++   GDG  GE+V+  +  IPTIPR L   +P+ +EVRGE
Sbjct: 114 EHKVDGLSV-LYYEEG--VWSTGSGDGEVGEEVTQNLLTIPTIPRRLK-GVPDRLEVRGE 169

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLG-KT 246
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P    +      F+  GLG   
Sbjct: 170 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGL 229

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E   K QYE+L  ++  GFPV +   +A    G+   Y    + R  LP++ DG+V K+
Sbjct: 230 EESGLKSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKL 289

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +L  +LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV I G+
Sbjct: 290 DDLTLWGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGS 349

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R    +
Sbjct: 350 EVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGKER 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  +P  CP C  R+V     K GK+   HRC   L C A++ E ++H+ SR A +IEGL
Sbjct: 399 PIRWPEACPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIEGL 449

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSIN 543
           G++ ++   +       +R  AD++ L++         E++LG    G+ S  NL   I 
Sbjct: 450 GEKLIERLLEK----GLVRDVADLYHLRK---------EDLLGLERMGEKSAQNLLRQIE 496

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + ++  LER +++LG+  VG  +AR+LA+ + +     +     +    +          
Sbjct: 497 ESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEE---------- 546

Query: 604 VGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           VG++ A+AI+E  ++P  R++      LKE   S+   E+ VS  +     V TG L + 
Sbjct: 547 VGELTARAILETLKDPAFRDLV---RRLKEAGVSMESKEE-VSDLLSGLTFVLTGELSR- 601

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R + +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV ++ EE+F   L++
Sbjct: 602 PREEVKALLQRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKE 660


>gi|291530728|emb|CBK96313.1| DNA ligase, NAD-dependent [Eubacterium siraeum 70/3]
          Length = 660

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 234/705 (33%), Positives = 366/705 (51%), Gaps = 51/705 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQ + E   L ++   H+  YY    P I D EYD L RR   I    P++      + P
Sbjct: 4   EQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSE---SSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG    +  KVTH +   SL+ +++  +L +F  R+     KK      + +EPKI
Sbjct: 61  TQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERV-----KKAVGKAVYCVEPKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ Y+ G F   + RGDG  GED++  ++ I +IP VL   IP  IEVRGEVY+ 
Sbjct: 116 DGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMVLREKIP-FIEVRGEVYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K DF  L  + +    +P  NPRNAA+G LR+ +     +R L+ FV  L +        
Sbjct: 175 KADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIEGRELTC 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  M+ LGF V +G +  +     VS   E+   R +  YDIDG V KVD+F L+ 
Sbjct: 235 HSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDDFELRN 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+ P+W ++ K+  ++  T+LLDI+I +GRTG LTPVA  EPV + G  ++ A L
Sbjct: 295 ELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSRAVL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+DYI             +DIR+GD + V++AG++IP+VV  + +    +++PF  P  
Sbjct: 355 HNQDYID-----------SKDIRIGDIIAVRKAGDIIPEVVRSVSHAE--NSEPFVIPHI 401

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C  +  R  +       A  RC   + C AQ L+ ++HF SR A NI+GLG+  +  
Sbjct: 402 CPVCHGKAERAEDE------AVIRCV-NIDCPAQLLKNIEHFASRPAMNIDGLGEAVVKQ 454

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++      I   AD+++LQ++       +E + GF  VS + L  +I   +  S +R 
Sbjct: 455 LVENR----LISTVADLYSLQQQD------LEMLPGFAKVSASKLIANIENSKTNSPDRL 504

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGI+ +G + A+ L K + S +  ++  +  I+           V   GDI+A  I 
Sbjct: 505 LFALGIKGIGQKNAQLLMKNFGSIEKLSETSSEEISA----------VENFGDILANNIF 554

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
                P     +E  LK    +        S ++     V TGTL  + R +A+  + Q 
Sbjct: 555 TALHEPHMTELIER-LKSYGVNTVYQSDVKSDKLAGLTFVITGTLPDMTRDEAKTLIEQN 613

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G   S  +S+KT  ++ G+  GSKL KAQQLGV +++++Q + ++
Sbjct: 614 GGKCSGSVSKKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMI 658


>gi|254427631|ref|ZP_05041338.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
 gi|196193800|gb|EDX88759.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
          Length = 776

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/605 (36%), Positives = 329/605 (54%), Gaps = 48/605 (7%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF-KVTHSI 93
           YY    P + D+EYD   R    +   +PDL  ++ P   +    G++ L  F +V H +
Sbjct: 24  YYVQDDPAVPDAEYDRAFRELKDLEAQYPDLITADSPTQRV----GDVPLDAFEQVQHEV 79

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL+  ++ +DLR F  RI    +   D ++ +  EPK+DG  I++ Y  G+ V AA 
Sbjct: 80  PMLSLDNAFDDDDLRAFDKRIRE--RLGVDETVDYVAEPKLDGLAISLLYLDGQLVRAAT 137

Query: 154 RGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDG +GE+++   R I ++P  L    +P  +EVRGEV +    F ALN    A  +K 
Sbjct: 138 RGDGQTGENITVNARTIRSVPLTLRGSQVPSRLEVRGEVVMPHAGFAALNARQEAAEQKV 197

Query: 213 YANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY-EMLQKMRCLGFPVNN 270
           +ANPRNAA+G LR+L+     +R L F+ + + +   +     + +ML+ +R  G  VN 
Sbjct: 198 FANPRNAAAGSLRQLDSRITASRPLEFYAYSMAQLEGVPEPATHADMLEALRSWGLRVNP 257

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
            VR       ++++Y  +   R  L YDIDG+VYKVD F  Q+ LG  +R+PRW I+HKF
Sbjct: 258 EVRVCAGVDALLAFYQGILEKRDHLDYDIDGVVYKVDRFDWQQDLGFVSRAPRWAIAHKF 317

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
             ++  T L  +D Q+GRTG LTPVARLEPV++GG +++NATLHN D I+ L        
Sbjct: 318 PAQEELTVLNGVDWQVGRTGALTPVARLEPVHVGGVIVSNATLHNIDEIQRL-------- 369

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
              DIR+GD V+V RAG+VIPKVV  +   R  DA+  + P  CP+C S ++R      G
Sbjct: 370 ---DIRIGDTVVVYRAGDVIPKVVRALPERRPADARDIALPPSCPVCGSDILR------G 420

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
                 RCTGGL C AQQ E +KHF SR A +I+GLG + +D     E     I   AD+
Sbjct: 421 DDQVVARCTGGLICGAQQREAIKHFASRRAMDIDGLGDKLVDALVDQE----LIATVADL 476

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           + L+  Q     ++      G+ S  NL  ++   + + L RF+F+LGI  +G E A++L
Sbjct: 477 YRLKAEQVAGLERM------GEKSADNLIAALETSKTVGLGRFLFALGILQIGEETAKNL 530

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A  +   +   +    ++            VP VG  +A+AI  F+    N   ++ LL 
Sbjct: 531 ADCFGDLEGIRRAPLLLLLA----------VPDVGMEVAKAIGAFFAEADNEVVIDGLLA 580

Query: 631 E-VSP 634
           E V+P
Sbjct: 581 EGVNP 585



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 51/79 (64%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           S  +E +  V TGTL+++ R +A++ + QLGA V+  +S+ T  ++ G + GSKL KA+ 
Sbjct: 692 SRPLEGQTWVLTGTLEQLTRDQAKQALQQLGAKVAGSVSKNTSTVVAGASAGSKLAKAES 751

Query: 704 LGVKIMNEEQFLFLLQQYN 722
           LGV++ +E   L +L Q+ 
Sbjct: 752 LGVEVCDEAALLSMLTQHG 770


>gi|53713694|ref|YP_099686.1| DNA ligase [Bacteroides fragilis YCH46]
 gi|81382396|sp|Q64TM7|DNLJ_BACFR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52216559|dbj|BAD49152.1| DNA ligase [Bacteroides fragilis YCH46]
          Length = 665

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 235/707 (33%), Positives = 373/707 (52%), Gaps = 52/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  ++  H+  YY  + P I D E+D L R    +    P+    +D N P  +
Sbjct: 4   KEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL   N PE+ E+RGE+ +   
Sbjct: 117 SISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F ALN E  A     +ANPRNAASG L+  N   + +R L+ +++ L     +   G Y
Sbjct: 177 VFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    Q+ L
Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + CP
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R      G+  AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++ L      +T  I  +   GD S  N+   I + + +  ER IF
Sbjct: 459 R----LGLIHDTADLYRL------TTDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVIF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +           +I    N D  +LI +  +G+ IA++I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSF----------KDIEELENADLETLINIDEIGEKIARSILNY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + N  N   V+  LK     + R E+++S    ++  + +V +G      R + ++ + +
Sbjct: 559 FANESNRKLVDR-LKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 618 HGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|331015921|gb|EGH95977.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 787

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/633 (35%), Positives = 343/633 (54%), Gaps = 50/633 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+ + IT  R L F  +GLG
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLG 236

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+
Sbjct: 237 QTSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVF 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + 
Sbjct: 297 KVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   
Sbjct: 357 GVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPET 405

Query: 425 AQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSR 478
           A+P   P  CP+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR
Sbjct: 406 AKPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSR 465

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L
Sbjct: 466 RAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKL 515

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +        
Sbjct: 516 LKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY-------- 567

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             +P VG  +A  I  F+++  N   ++ALL E
Sbjct: 568 --LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 598



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  +            + A  + DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRF----------GTLEAVISADWLDMRQT--LPE 663

Query: 607 IIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+    N     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDNANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++EE  L  L
Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEEALLKRL 779

Query: 719 QQYNTTL 725
            +    +
Sbjct: 780 TELGVAI 786


>gi|28870811|ref|NP_793430.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|81730313|sp|Q87YY6|DNLJ_PSESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28854060|gb|AAO57125.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 787

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/633 (35%), Positives = 343/633 (54%), Gaps = 50/633 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+ + IT  R L F  +GLG
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLG 236

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+
Sbjct: 237 QTSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVF 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + 
Sbjct: 297 KVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   
Sbjct: 357 GVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPET 405

Query: 425 AQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSR 478
           A+P   P  CP+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR
Sbjct: 406 AKPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSR 465

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L
Sbjct: 466 RAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKL 515

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +        
Sbjct: 516 LKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY-------- 567

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             +P VG  +A  I  F+++  N   ++ALL E
Sbjct: 568 --LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 598



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  +            + A  + DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRF----------GTLEAVISADWLDMRQT--LPE 663

Query: 607 IIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+    N     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDNANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++EE  L  L
Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEEALLKRL 779

Query: 719 QQYNTTL 725
            +    +
Sbjct: 780 TELGVAV 786


>gi|330963250|gb|EGH63510.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 787

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/633 (35%), Positives = 344/633 (54%), Gaps = 50/633 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+ + IT  R L F  +GLG
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLG 236

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+
Sbjct: 237 QTSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVF 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + 
Sbjct: 297 KVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   
Sbjct: 357 GVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPET 405

Query: 425 AQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSR 478
           A+P   P  CP+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR
Sbjct: 406 AKPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSR 465

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L
Sbjct: 466 RAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKL 515

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +        
Sbjct: 516 LKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY-------- 567

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             +P VG  +A  I  F+++  N   ++ALL E
Sbjct: 568 --LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 598



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  +            + A    DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRF----------GTLEAVIGADWLDMRQA--LPE 663

Query: 607 IIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+    N     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDNANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779

Query: 719 QQYNTTL 725
            +    +
Sbjct: 780 TELGVAV 786


>gi|226365931|ref|YP_002783714.1| NAD-dependent DNA ligase LigA [Rhodococcus opacus B4]
 gi|254781403|sp|C1B1S4|DNLJ_RHOOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226244421|dbj|BAH54769.1| NAD(+)-dependent DNA ligase [Rhodococcus opacus B4]
          Length = 697

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/708 (32%), Positives = 364/708 (51%), Gaps = 44/708 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+  + L +++  H   YY    PII D E+DAL    + + + +PDL     P+ P   
Sbjct: 17  REHWNELAEDVRQHQFRYYVRDAPIISDGEFDALLGELNDLENQYPDL---RTPDSPTQL 73

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG          H    LSL+ ++  ++LR +I+R+    +++    + +  E KIDG 
Sbjct: 74  VGGGFATDFASADHLERMLSLDNVFATDELRTWISRV----EQETGPDLHYLCEVKIDGV 129

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            + + YE G+ V AA RGDG +GE+V+   R I  IP  L+      IP ++EVRGEV+ 
Sbjct: 130 ALNLVYENGRLVRAATRGDGRTGEEVTLNARTIDDIPEKLTGTDKYPIPALLEVRGEVFF 189

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HGLG++      
Sbjct: 190 RLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGLGRSEGFEPA 249

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            QY+    +   G PV+    +      +V         R  + ++IDGLV KVDE SLQ
Sbjct: 250 SQYDAYTALAAWGLPVSTHTVRVTGADAVVDRVQYWGEHRHDVEHEIDGLVVKVDETSLQ 309

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I++K+  ++A+T+LLDI + +GRTG +TP A +EPV + G+ ++ AT
Sbjct: 310 RRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVAGSTVSLAT 369

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   +K         R G  + +GD V++++AG+VIP+V+  +V+ R  D   F  P+
Sbjct: 370 LHNGSEVK---------RKG--VLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVMPA 418

Query: 433 FCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            CP C +     L P K G   A  RC     C AQ  ER+ H   R AF+IE LG +  
Sbjct: 419 NCPECDT----PLAPAKEGD--ADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEAA 472

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               +++    +I    D+F+L       TT      G    +   L D+++  ++  L 
Sbjct: 473 TSLLEAK----AIGDEGDLFSLTEDDLLKTTLFRTKAGGLSANGRRLLDNLDSAKDKPLW 528

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   AR+LA  + S     +               L  V  VG  IA A
Sbjct: 529 RVLVALSIRHVGPTAARALAGEFGSLDRIRESSVE----------ELAAVDGVGGTIAAA 578

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + E++    +   V+             ++++   +E   +V TG+L+   R +A+E + 
Sbjct: 579 VAEWFGVDWHRQIVDKWSAAGVRMEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAIL 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G   +  +S+KT  ++ G++PGSK +KA +LGV +++E+ F  LL+
Sbjct: 639 VRGGKAAGSVSKKTAFVVAGESPGSKHDKAVELGVPVLDEDGFRRLLE 686


>gi|269792727|ref|YP_003317631.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100362|gb|ACZ19349.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 673

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 233/712 (32%), Positives = 369/712 (51%), Gaps = 60/712 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR  +  L + I +HD  YYQ + P I D EYDAL R    +  +FPDL     P+ P  
Sbjct: 6   ARSRMEELAELIRHHDRLYYQENSPEITDQEYDALFRELVDLERSFPDLRL---PDSPTL 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++ G  + +  ++ HS P LSL+   + E++  F+ R+Y         S     EPK+DG
Sbjct: 63  RVSGSPSEAFKRLPHSEPMLSLDNAVSREEVSDFLRRLY----DALGGSAPVVCEPKLDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++ Y  G  +    RGDG  GEDV++ +  I  +P+   ++    +EVRGEVY+S+ 
Sbjct: 119 LAVSLLYRGGVLIRGLTRGDGSVGEDVTSNVMTIRDLPK--RIDYMGELEVRGEVYMSRR 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255
           DF ALN      G  P+ANPRNAA+G LR+L+P     R L+ F++ +    E+  K Q 
Sbjct: 177 DFAALNQRREEEGLPPFANPRNAAAGSLRQLDPRVTAQRNLSCFLYHVVNHREVGLKTQE 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L  ++   FPV    R       ++ Y ++    R + P D DG+V K+D    ++ L
Sbjct: 237 ELLLWLKGRSFPVQEDFRLCRDPEEVLEYLDDWDRRRHSYPADTDGVVIKLDSLEGREVL 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   RSPRW ++ KF  ++  TR+L I++ +GRTG++TP A LEPV + G  +  A+LHN
Sbjct: 297 GSTNRSPRWAVAFKFPPEERPTRVLSIEVSVGRTGVVTPTAVLEPVRLSGTEVRRASLHN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D +             +D+RVGD V V++AGE+IP+V+ + +  R     PF  P  CP
Sbjct: 357 FDEL-----------ARKDVRVGDTVWVRKAGEIIPEVIRVDLGLRPEGTAPFVPPEGCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C SR+VR      G++  A RC    +C AQ  ER+ HF SRD  ++ GLG++      
Sbjct: 406 SCGSRLVR----LPGEV--AIRCINP-SCPAQMKERIIHFASRDGMDVRGLGEKVASQLV 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   ++  AD+F L      S  ++      G+ S +NL  +++  R+  L + I+
Sbjct: 459 DR----GMVKDLADLFFLTMEDWLSLDRM------GERSASNLVRALDVARDRPLRKLIY 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGI  VG   A+ LA  +   +         +A           V  VG ++A+++ +F
Sbjct: 509 ALGIPGVGERTAQDLADRFGRLEALMDASEEELAS----------VEGVGPVVARSVRDF 558

Query: 616 YQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++N   +  V  L       E  P+ G         +E  + VFTG L  ++R +AQ+ V
Sbjct: 559 FRNDSTVRLVRRLRDAGVRMEERPTAG-------GPLEGMRFVFTGELGSMRRKEAQDLV 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +LG  VS  +S+    ++ G+  GSKL +A+ LGV I +E++FL L++++ 
Sbjct: 612 IRLGGKVSDSVSKGVTALVAGEGGGSKLSRARALGVPIWSEDRFLELVREHT 663


>gi|159028322|emb|CAO87220.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 669

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 233/716 (32%), Positives = 377/716 (52%), Gaps = 53/716 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP+E   I+Q  ++L +  Q  SY    YY    P I DS YD L R  + I   +P L 
Sbjct: 3   IPLE---IQQRCQQLKTELQRASY---AYYVLDDPFISDSVYDQLYRELEDIEKRYPQLI 56

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  ++G +++     V H+IP  SLE  +N+E+L K+ +R  R+  +  D   
Sbjct: 57  ---TPDSPTQRVGDKISSQFVSVRHNIPLYSLENAFNLEELNKWGSRWQRYVNETQDTE- 112

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185
            +  E KIDG+ + + YE G  V    RGDG +GED++  +R I +IP  L++ N P I+
Sbjct: 113 -YVCELKIDGSALALTYENGFLVRGVTRGDGVTGEDITPNVRTIRSIPLRLNIDNPPAIV 171

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG 244
           EVRGE ++  + F  +N E    G   +ANPRNAA+G LR+L+P  +  R L FF + L 
Sbjct: 172 EVRGEAFLPLDTFDKINQEREEKGESLFANPRNAAAGTLRQLDPKIVDKRRLQFFAYTL- 230

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              +     Q++ L ++  +GF VN   +   +   +  YY + +  R  L Y  DG+V 
Sbjct: 231 HLDDNHITTQWQSLDRLETMGFLVNPHRQLCPSLQEVAQYYQDWQEKRHQLAYMTDGVVV 290

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+++   Q +LG   + PRW I+ K+  ++  T + DI + +GRTG +TP+A +EPV + 
Sbjct: 291 KINDLQRQNRLGFTQKFPRWAIALKYPAEEVPTVVKDIIVNVGRTGAVTPMAVMEPVQVA 350

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  ATLHN D +  L           DIRVGD V++++AGE+IP+VV I+   R   
Sbjct: 351 GTTVQRATLHNSDRVAEL-----------DIRVGDTVIIRKAGEIIPEVVRILPELRPSQ 399

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             PF  P+ CP CQS +VR +        A  RC    +C A     + H+ SRDA +I 
Sbjct: 400 TLPFQMPTNCPECQSPLVRPVGE------AVTRCVNS-SCPAILRGSVVHWASRDALDIR 452

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +    +       +   +D+++L++      T+I  +   G+ S  NL  ++ +
Sbjct: 453 GLGEKVVILLIEQG----LVTAISDLYSLEK------TEIAKLDRMGEKSALNLITAMAQ 502

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +N S  R ++ LGIR+VG+  A+ LA+ + + +  A          N     L  V  +
Sbjct: 503 SKNQSWSRVLYGLGIRYVGSVNAKILAESFRTVEELA----------NASVTDLASVYGI 552

Query: 605 GDIIAQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G+ IAQ++ ++++   N   V  L    +  +         + +  K  V TGTL  ++R
Sbjct: 553 GEEIAQSVYDWFRIAANRDLVAKLQAAGLQFAAAAKTTTTKATLAGKTFVITGTLPTLKR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E + + G  V+  +S+KTD +++G+  GSKLEKA +LG+  + E Q L L++
Sbjct: 613 EEAKELIEKAGGKVTGSVSKKTDYLVLGEAAGSKLEKALELGITQLTEAQLLELIK 668


>gi|253565642|ref|ZP_04843097.1| DNA ligase [Bacteroides sp. 3_2_5]
 gi|251945921|gb|EES86328.1| DNA ligase [Bacteroides sp. 3_2_5]
          Length = 665

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 235/707 (33%), Positives = 372/707 (52%), Gaps = 52/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  ++  H+  YY  + P I D E+D L R    +    P+    +D N P  +
Sbjct: 4   KEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL   N PE+ E+RGE+ +   
Sbjct: 117 SISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F ALN E  A     +ANPRNAASG L+  N   + +R L+ +++ L     +   G Y
Sbjct: 177 VFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    Q+ L
Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + CP
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R      G+  AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++ L      +T  I  +   GD S  N+   I + + +  ER IF
Sbjct: 459 R----LGLIHDTADLYRL------TTDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVIF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +           +I    N D  +LI +  +G+ IA++I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSF----------KDIEELENADLETLINIDEIGEKIARSILNY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + N  N   V   LK     + R E+++S    ++  + +V +G      R + ++ + +
Sbjct: 559 FANESNRKLV-GRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 618 HGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|330879146|gb|EGH13295.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 787

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/633 (35%), Positives = 344/633 (54%), Gaps = 50/633 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGATGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+ + IT  R L F  +GLG
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLG 236

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+
Sbjct: 237 QTSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVF 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + 
Sbjct: 297 KVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   
Sbjct: 357 GVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPET 405

Query: 425 AQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSR 478
           A+P   P  CP+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR
Sbjct: 406 AKPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSR 465

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L
Sbjct: 466 RAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKL 515

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +        
Sbjct: 516 LKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY-------- 567

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             +P VG  +A  I  F+++  N   ++ALL E
Sbjct: 568 --LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 598



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  + +       ++ +I     DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LDAVIGA---DWLDMRQA--LPE 663

Query: 607 IIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+    N     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDNANAERARAIEAQLKD----FGMHWRSEKKAVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779

Query: 719 QQYNTTL 725
            +    +
Sbjct: 780 TELGVAV 786


>gi|116493340|ref|YP_805075.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745]
 gi|122265196|sp|Q03DT9|DNLJ_PEDPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116103490|gb|ABJ68633.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745]
          Length = 675

 Score =  369 bits (947), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 232/719 (32%), Positives = 394/719 (54%), Gaps = 57/719 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E + +E+A K   +L + +      YY    P + D EYD       A+  AFP++   
Sbjct: 7   LEEMQVEEASKLAQNLREILDRWSKLYYTKDAPEVEDYEYDEKYADLVALEEAFPEIITQ 66

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +       ++GGE+     KVTH+ P LS+  +++ ++L +F  RI    QK   + + +
Sbjct: 67  DSIT---QRVGGEILEGFTKVTHTEPMLSMGDVFSRDELVEFDNRI----QKNVGHPVDY 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  I++ Y+ G+ +  + RGDG+ GED++  ++ I ++P+ L+   P  IEVR
Sbjct: 120 NVELKIDGLAISLIYQDGELIQGSTRGDGNIGEDITKNLKTIKSVPQKLTR--PLSIEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246
           GE ++ K  F  LN + +  G+  +ANPRNAA+G LR+LN T++T  R L+ F++ +  +
Sbjct: 178 GECFMPKASFAKLNAQQLEDGKPVFANPRNAAAGSLRQLN-TNVTKKRDLDTFIYTVVDS 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           +++ AK Q++ +Q M  LGF  N           +  Y  + +  R  LPY IDG+V KV
Sbjct: 237 NQLGAKTQHQAIQMMAELGFNTNPTQEVCANLDEVWDYIAKYEGQREDLPYGIDGIVLKV 296

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ SLQ++LG   + PRW I++KF  ++A+T + DI+  +GRTG++TP A ++PV + G 
Sbjct: 297 NDLSLQQELGHTVKIPRWEIAYKFPPEEAATVVRDIEWTVGRTGVVTPTAVMDPVQLAGT 356

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATL+N D +             +D+ +GD VL+ +AG++IP++  +++ +R     
Sbjct: 357 TVSRATLNNVDQLT-----------AKDVHIGDTVLLHKAGDIIPEITRVVLEKRPVGIS 405

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP C   +V  LN +      A RC     C AQ + RL+HF SR+A NI GL
Sbjct: 406 ELDIPTHCPSCGKELVH-LNGE-----VALRCINP-DCPAQIVARLEHFGSRNAMNIMGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+   +        I    D++ L      ++ ++  + GF +  V NL ++I+  R
Sbjct: 459 GPKQIQQLYAKN----FIHHFDDLYKL------TSEELSQLDGFKEKRVNNLLEAIDNSR 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVG 605
             SLER I  LGI+ VG ++AR+LA+ + +  N  Q  I    A           V  +G
Sbjct: 509 KNSLERLINGLGIQGVGTKMARTLAEKFGTMDNLMQTTIEEFDA-----------VDTIG 557

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLVFTGTLQKI 661
           + +A  +  F+Q+      ++  LK V  ++     +  ++     + KK+V TG L++ 
Sbjct: 558 ETLANNLATFFQSDVAQNMIDE-LKAVGVNMEYLGVKPAESPDGYYKGKKVVLTGKLEQY 616

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R++ +E +  LGA V+  +S+KTDI+I G + GSKL KAQ LG++I++E + +   +Q
Sbjct: 617 TRNELKERLISLGADVAGSVSKKTDILIAGADAGSKLTKAQALGIEILDETEAIAKFEQ 675


>gi|111023430|ref|YP_706402.1| NAD-dependent DNA ligase LigA [Rhodococcus jostii RHA1]
 gi|123045472|sp|Q0S2J2|DNLJ_RHOSR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110822960|gb|ABG98244.1| DNA ligase (NAD+) [Rhodococcus jostii RHA1]
          Length = 696

 Score =  369 bits (947), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 229/708 (32%), Positives = 364/708 (51%), Gaps = 44/708 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+  + L +E+  H   YY    PII D E+D L    + + + +PDL     P+ P   
Sbjct: 16  REHWNELAEEVRQHQFRYYVRDAPIISDGEFDVLLGELNDLENQYPDL---RTPDSPTQL 72

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG  +       H    LSL+ ++  ++LR +I+R+    +++    + +  E KIDG 
Sbjct: 73  VGGGFSTDFASADHLERMLSLDNVFATDELRTWISRV----EQETGPDLHYLCEVKIDGV 128

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            + + YE G+   AA RGDG +GE+V+   R I  IP  L+      IP ++EVRGEV+ 
Sbjct: 129 ALNLVYENGRLDRAATRGDGRTGEEVTLNARTIDDIPEKLTGTDEYPIPALLEVRGEVFF 188

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HGLG++      
Sbjct: 189 RLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGLGRSEGFEPV 248

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            QY+    +   G PV+    +      +V         R  + ++IDGLV KVDE SLQ
Sbjct: 249 SQYDAYTALAAWGLPVSTHTARVTGADAVVDRVQYWGEHRHDVEHEIDGLVVKVDETSLQ 308

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I++K+  ++A+T+LLDI + +GRTG +TP A +EPV + G+ ++ AT
Sbjct: 309 RRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVAGSTVSLAT 368

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   +K         R G  + +GD V++++AG+VIP+V+  +V+ R  D   F  P+
Sbjct: 369 LHNGSEVK---------RKG--VLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVMPT 417

Query: 433 FCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            CP C +     L P K G   A  RC     C AQ  ER+ H   R AF+IE LG +  
Sbjct: 418 HCPECDT----PLAPAKEGD--ADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEAA 471

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               +++    +I    D+F+L       T+      G    +   L D+++  ++  L 
Sbjct: 472 TSLLEAK----AIGDEGDLFSLTEDDLLKTSLFRTKAGGLSANGRRLLDNLDSAKDKPLW 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   AR+LA  + S     +               L  V  VG  IA A
Sbjct: 528 RVLVALSIRHVGPTAARALAGEFGSLARIRESSVE----------ELAAVDGVGGTIAAA 577

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + E++    +   VE             ++++   +E   +V TG+L+   R +A+E + 
Sbjct: 578 VAEWFGVDWHQQIVEKWSAAGVRMEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAIL 637

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G   +  +S+KT  ++VG++PGSK +KA +LGV +++E+ F  LL+
Sbjct: 638 IRGGKAAGSVSKKTAFVVVGESPGSKHDKAVELGVPVLDEDGFRRLLE 685


>gi|282899989|ref|ZP_06307949.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505]
 gi|281195087|gb|EFA70024.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505]
          Length = 690

 Score =  369 bits (947), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 239/715 (33%), Positives = 379/715 (53%), Gaps = 56/715 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q  +EL  L Q+ SY    YY    PI+ D+ YD L R    +   +P+L  ++ P    
Sbjct: 12  QRVEELRKLLQQASY---AYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTTDSPT--- 65

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKI 134
            ++G         V H+IP  SLE  +N+E+L+ +  R  R          + +  E KI
Sbjct: 66  QRVGERPATHFSSVRHNIPLYSLENAFNVEELQSWNQRWIRHLPTPHSLTEVEYVAELKI 125

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE---VRGEV 191
           DG  + + Y+ G  V  A RGDG +GED++  +R I +IP  L+ +  E+IE   VRGEV
Sbjct: 126 DGAALALTYQNGVLVRGATRGDGITGEDITPNVRTIRSIPLRLNFDGIELIEKVEVRGEV 185

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTS 247
           ++    F  +N +    G + +ANPRNA +G LR+L+P  +  R L+FF + L   G   
Sbjct: 186 FLPLEVFKQINQKRQKAGEQLFANPRNAVAGTLRQLDPRVVAQRQLDFFAYTLHIPGLDD 245

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A  Q+E LQ ++ LGF V+   +  ++   +  YY    + R   PY  DG+V K++
Sbjct: 246 RSIANTQWESLQLLQKLGFRVDVNHKLCSSVDEVAQYYQYWNTERLNSPYMTDGVVVKLN 305

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F LQ+QLG   + PRW I+ K+A ++A TR+ +I + +GRTG LTP+A + PV + G  
Sbjct: 306 AFKLQEQLGFTQKFPRWAIALKYAAEEAPTRVENIMVNVGRTGALTPLAEMRPVQLAGTT 365

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN D ++ L           DIR+GD V+V++AGE+IP+VV +I   R  D +P
Sbjct: 366 VSRATLHNSDRLREL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPNDTEP 414

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP+C   VVR+L    G++V   RC    +C A     ++H+VSRDA +I+G+G
Sbjct: 415 FIMPTNCPVCGQPVVREL----GEVVT--RCVNA-SCPAILKGEIEHWVSRDALDIKGIG 467

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++      +  D    +   AD++ L   Q     ++      G  S   L   I + +N
Sbjct: 468 EK---LVHQLVDKGL-VHSVADLYNLTEEQLCGLERM------GKRSAEKLVQVIRESKN 517

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R ++ LGIRHVG+  A+ L++ + +    A       A  +D    +  V  +G  
Sbjct: 518 QPWSRVLYGLGIRHVGSVNAQLLSEKFTTVDKLAS------AKQSD----IEGVYGIGVE 567

Query: 608 IAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQR 663
           IAQ++ +++    N   I  +E +  +++     H +   + +I  K  V TGTL  ++R
Sbjct: 568 IAQSVYQWFHISANQNLIIRLETIGIQLATGKSVHARTEPNPQIAGKTFVITGTLPTLKR 627

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+  + + G  V+  +S+KTD I+VG + GSKLEKAQ LG+K ++E   L +L
Sbjct: 628 DEAKAMIQKAGGKVTDTVSKKTDFIVVGADAGSKLEKAQSLGIKQLDEANLLEML 682


>gi|225018630|ref|ZP_03707822.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
           DSM 5476]
 gi|224948624|gb|EEG29833.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
           DSM 5476]
          Length = 659

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 240/713 (33%), Positives = 383/713 (53%), Gaps = 69/713 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A+  ++ L +++ YH   YY    P I D +YDA+ R  + +   FP+L RS+  N P  
Sbjct: 6   AQLRVAELTKQLHYHSHRYYVLDDPEISDFDYDAMLRELETLEAEFPEL-RSD--NSPTV 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+ + S  KV H++   SL+  ++  ++  F  R+    ++K D+ ++  +EPKIDG
Sbjct: 63  RVGGQASNSFEKVAHAVQMGSLQDAFSDGEMLDFFRRV----EEKIDHPVY-VVEPKIDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++ Y  G+F   + RGDG  GEDV+  +R I +IP  L+  +P  +EVRGEV++ ++
Sbjct: 118 LSVSLEYRDGEFFRGSTRGDGFIGEDVTQNLRTIRSIPLKLTRPLP-YLEVRGEVFMPRD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            FL + +        P+ NPRNAA+G LR+ +P  +  R L+ +V  + +          
Sbjct: 177 SFLKVVERQEIEEETPFKNPRNAAAGSLRQKDPKVVAERGLDIYVFNVQQIEGEELTSHK 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI---RSTLPYDIDGLVYKVDEFSLQ 312
           + L  +R LGF V   + + NTF       +E+ SI   R   P+DIDG V KVD+FS +
Sbjct: 237 QSLDLLRGLGFKV---IPRYNTFEDPQQVLDEIASIGDRRGEYPFDIDGAVVKVDDFSER 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A+ P+W ++ K+  ++  T L  ID+ +GRTG LTPVA  +P+ + G  ++ A 
Sbjct: 294 EILGAGAKYPKWAMAFKYPPEEKETVLKQIDVNVGRTGALTPVALFDPIILAGTTVSRAV 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFP 431
           LHN+D+I             +DIR+GD ++V++AG++IP+VV +    +H + ++PF  P
Sbjct: 354 LHNQDFIT-----------EKDIRIGDTIVVRKAGDIIPEVVSVA---KHAEQSEPFLLP 399

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S VVR  +       AA RC     C A +L  + HF SR A NI+GLG   +
Sbjct: 400 EHCPVCGSEVVRVEDE------AAVRCENP-ECPATRLRNIIHFASRGAMNIDGLGTANI 452

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                +      I+  AD++ L+R       K+E    F D SV NL  SI K +   L 
Sbjct: 453 TALIDNG----LIKSSADLYYLKRE---DLLKLER---FADKSVDNLLSSIEKSKGNELW 502

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIRVPLVGDI 607
           R +F LGIR VG  +A+ L + Y +        A+EI+ I                VG +
Sbjct: 503 RLLFGLGIRGVGQSVAKLLCEKYGNIDELMTAPAEEIDEIYG--------------VGGV 548

Query: 608 IAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           IA  IV+++  P +   +E      V+P+    +K    ++     V TGTL  ++R +A
Sbjct: 549 IAHNIVQYFALPHSRQLIERFQAAGVNPTAVPVQKG--DKLAGLTFVITGTLPTMKREEA 606

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + Q G   +  +S+KT  ++ G+  GSKL KAQ LGV +++EEQFL ++Q
Sbjct: 607 KALIEQNGGKATGSVSKKTSYLLAGEEAGSKLTKAQSLGVPVLDEEQFLKMIQ 659


>gi|254445017|ref|ZP_05058493.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
 gi|198259325|gb|EDY83633.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
          Length = 668

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 224/700 (32%), Positives = 359/700 (51%), Gaps = 47/700 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L  EI  HD+ YY+ ++P I D +YD LKR    +  A P+L     P      +
Sbjct: 8   KRIEQLRAEIRRHDELYYRNAEPEISDFDYDGLKRELADLEAANPELPMEASPT---QAV 64

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +         H +P  SL+  ++ ++   F+ R+ +  + ++ +   FT+EPKIDG  
Sbjct: 65  GDDRVEGFESYRHRLPMQSLDNTYSKDEFVAFVARVEKGLEIENAH---FTVEPKIDGVA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKND 197
           +++ YE+G+ V A  RG+G  G+DV+A  R I ++P  L  +  P++IE+RGE+++   +
Sbjct: 122 VSLTYEQGELVRAVTRGNGIEGDDVTANARFIESLPGSLQGDFHPDLIEIRGEIFMHVEE 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E    G + + NPRN A+G ++ L+  ++  R L+  ++GLG         Q E
Sbjct: 182 FERLNAERREAGLEQFKNPRNLAAGTIKMLDREEVAKRKLDIVLYGLGDCRPAVVSSQIE 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
             +++   G PV     +     G  S   E+  +R    +  DG V K+D FS Q  LG
Sbjct: 242 YRKQLVLWGLPVVERFWEVEGAEGAWSAVEELDEVRGGFAFPTDGAVVKLDSFSQQDALG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I+ KFA +QA T L  I IQ+GRTG LTPVA L+PV + G  ++ ATLHN+
Sbjct: 302 ATSKAPRWAIAVKFAAEQAETVLERITIQVGRTGTLTPVAELQPVQLAGTTVSRATLHNQ 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           + +             +D+RVGD V+V++AGE+IP VV +++ +R  ++  F FP  CP 
Sbjct: 362 EEM-----------ARKDVRVGDTVVVEKAGEIIPAVVRVVLEKRPEESASFVFPERCPA 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V +      G++  A RC     C  Q   RL+HF SR   +IEGLG+  +D    
Sbjct: 411 CGTEVSK----IEGEV--AVRCLNS-ECPDQVRGRLEHFASRQCLDIEGLGEAVVDQLVA 463

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     +   +DI+ L+     +  K      F + S  NL  +I   + + L R +  
Sbjct: 464 RK----IVSNISDIYGLEYEDMLALDK------FAEKSARNLLAAIEASKGVELWRLLHG 513

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  VGA  A+ LAK     +  ++               L+ +  +G+  A  IV ++
Sbjct: 514 LGIPQVGASAAKDLAKALGGVRELSEASVE----------RLVEIDGIGEKTASGIVAYF 563

Query: 617 QNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            + RN   V+AL    ++P          +    K  V TGTL  ++R +A+  V   G 
Sbjct: 564 GDERNKTVVDALFAAGMNPKAPERPSEADAIFAGKTFVITGTLPTMKRDEAKALVESKGG 623

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            V+  +S+KTD ++ G+  GSKL KA+ LGV +++E + L
Sbjct: 624 KVAGSVSKKTDFLVAGEAAGSKLTKAESLGVTVVDEAELL 663


>gi|122971128|sp|Q14L37|DNLJ_SPICI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110005471|emb|CAK99793.1| dna ligase protein [Spiroplasma citri]
          Length = 667

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 245/715 (34%), Positives = 394/715 (55%), Gaps = 56/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQA+K    L++++   +  YY    P + D EYD   +   AI   + +L   + P
Sbjct: 1   MTFEQAKKRSLVLKEQLEKWNYEYYVNDNPSVSDQEYDRALQELIAIEQQYSELITIDSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++ G+++    K  H+ P LSL   +N +DL  F  +I  F    +   I +T E
Sbjct: 61  T---QRVSGQISEKFNKYVHTSPMLSLGNAFNYDDLIHFDEQIKEFTALPE---IEYTCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ Y+    V  A RGDG +GEDV+  I+ I +IP  L ++ P +I VRGEV
Sbjct: 115 LKIDGLSISLVYDNHVLVMGATRGDGLTGEDVTINIKQIKSIP--LRIDQPTLI-VRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+S  +F  +N+E +  G   +ANPRNAA+G LR+L+ T +  R LN F++      +  
Sbjct: 172 YLSVEEFNKINEERVKNGEFKFANPRNAAAGTLRQLDSTIVAKRKLNAFLYYYVNALQDG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + QYE LQ++  L F +N   R  +    + +Y  E +  R+ L Y+IDG+V KV+  +
Sbjct: 232 IQSQYEALQRLEQLKFKINPEYRYCSNIAAVWAYIQEYEPKRNQLGYEIDGIVIKVNNLN 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L  ++G  A++P+W I++KF  +   T+LL+I   +GRTG +T  A LEP+ I G ++  
Sbjct: 292 LYNRIGYTAKNPKWAIAYKFPAEVVVTKLLNIFPSVGRTGRITYNAVLEPIRIVGTIVRA 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D+I             RDIR+GD V VK+AG++IP+V++ +   R  +AQ +  
Sbjct: 352 ATLHNADFIT-----------ERDIRIGDNVQVKKAGDIIPEVINYVAARRQKNAQKWQE 400

Query: 431 PSFCPICQS---RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            + CP C S   RV  +++      V   + T G          L+H+ SR+A NIEG+ 
Sbjct: 401 ATHCPECNSLLERVEGEVDQYCINSVCPKKITRG----------LEHYCSRNAMNIEGIS 450

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++  FK E     ++  +D++ L++  +    ++EN   FG+ S  N+  SIN  +N
Sbjct: 451 EKIIERLFKLE----YLKSFSDLYQLEQY-RAEIIELEN---FGEKSFENMITSINNSKN 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLER +F+LGIRHVG + A+ LA+ + +  N        +A  N + LS+I    +G I
Sbjct: 503 NSLERLLFALGIRHVGQKTAKLLARQFKTIDN--------LAAMNIEQLSIIND--IGPI 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A ++V+++  P N   + ALL++  V        ++++ + EN + V TG L K  R  
Sbjct: 553 VAASVVDYFAIPANQQEL-ALLRQNGVKMEYFATNQHLAQKFENYRFVITGVLSK-SREY 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +E +   G  VS  +S KT  ++ G + G+KL KAQ+L VKI+NEE+F  LL +
Sbjct: 611 FKELIESYGGQVSESVSAKTTYLLAGTDAGNKLVKAQKLNVKIINEEEFQQLLSK 665


>gi|225631070|ref|ZP_03787806.1| DNA ligase [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591237|gb|EEH12383.1| DNA ligase [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 508

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 222/533 (41%), Positives = 328/533 (61%), Gaps = 42/533 (7%)

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGE+YIS +DFL LN+         +ANPRNAA+G L++L+     +R L +F + L
Sbjct: 5   LEVRGEIYISNSDFLKLNE------NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSL 58

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              +E   K Q E+L K+  LGF VN      ++  G++ +YNE+ + R  L YDIDG+V
Sbjct: 59  IGGAE---KSQSEVLNKLEALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIV 115

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV++  LQ +LG   ++PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVN+
Sbjct: 116 YKVNDLVLQNRLGNTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNV 175

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG L++ A+LHN+D IK            +DIR GD V +KRAG+VIP++V++  + R P
Sbjct: 176 GGVLVSRASLHNQDEIK-----------RKDIREGDIVTIKRAGDVIPQIVEVSRDSRLP 224

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +   F FP  CP C S+ VR +  +     AA RC    AC AQ +E+LKHFVS+DAF+I
Sbjct: 225 NTPEFVFPEVCPECGSK-VRQVEGE-----AAVRCPEEFACKAQIIEKLKHFVSKDAFDI 278

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GLG +Q++FF+   D     +IP DIFTL+ R       +E   G+G  S+ +L ++I 
Sbjct: 279 VGLGDKQIEFFY---DLGLIKQIP-DIFTLEER--LDEFNLEEQSGWGKKSIAHLLNAIQ 332

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            RR I+L+RFIFSLGIR +G   A  LA YY+SY N+    N++I  ++D+   L+ +  
Sbjct: 333 SRRVITLDRFIFSLGIRFIGQVAAELLADYYVSYDNW---YNSMIELSSDN-TELVGIDG 388

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           +G  +A+++  F+    NI  +  L    ++ P       + +S + NK +VFTG L  +
Sbjct: 389 IGKKVAESLESFFSKEHNIKMLNDLTACLQILPV---SSNSSNSVLNNKIIVFTGKLLAM 445

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            R +A+     LGA VS+ LS KTD +I G+ PGSK +KA +LGV+I++E+Q+
Sbjct: 446 SRGEAKVRAKTLGAKVSSHLSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQW 498


>gi|227548037|ref|ZP_03978086.1| DNA ligase (NAD(+)) [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079891|gb|EEI17854.1| DNA ligase (NAD(+)) [Corynebacterium lipophiloflavum DSM 44291]
          Length = 689

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 242/708 (34%), Positives = 372/708 (52%), Gaps = 57/708 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L  ++ +H D YY   + +I D+E+D L     A   A P+LA    P  P  ++
Sbjct: 27  RQWDDLASQVRHHRDLYYN-GQQVISDAEFDKLFNNLVAFEEAHPELAV---PESPTKEV 82

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G  ++ +   VTH    +SL+ +++ E+L  ++ +              +  E KIDG  
Sbjct: 83  GAPVSSAFADVTHLERMMSLDNVFSAEELADWLAK----------TPGPYLTELKIDGLS 132

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + YE G+ V AA RGDG  GED++A  + IP IP  L+ + PE++EVRGEV+I   DF
Sbjct: 133 IDLVYENGELVRAATRGDGRVGEDITANAKVIPDIPHRLTGDFPELLEVRGEVFIRPEDF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             LN++ I  G KP+ANPRN A+G LR+ NP D+  R L    HG+G         Q+E 
Sbjct: 193 PELNEQRIKEGGKPFANPRNTAAGGLRQKNPEDVKKRRLRMICHGIGAREGFSPASQFEA 252

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            +K+   G PV+   R+A T + +    +     R    +++DG+V KVD  + Q+ LG 
Sbjct: 253 YEKLAEWGLPVSEYTRRAETANEVQESVDYWAEHRHDAIHEMDGVVIKVDSVATQRSLGA 312

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW I++K+  ++ +T+LLDI++ +GRTG  TP A LEPV + G+ ++ ATLHN+ 
Sbjct: 313 TSRAPRWAIAYKYPPEEVTTKLLDIEVSVGRTGRATPFAVLEPVFVSGSTVSLATLHNQH 372

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            +K         R G  + +GD V++++AGE+IP+V+  + + R    + F +P  CP C
Sbjct: 373 EVK---------RKG--VLIGDTVVIRKAGEIIPEVLGPVADLRDGSEREFIYPKDCPAC 421

Query: 438 QSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-KQQLDFFF 495
            +    +L P K G   A  RC    +C AQ  +RLK+  SR AF+IE LG K  +D   
Sbjct: 422 GT----ELAPAKEGD--ADWRCPNTRSCPAQLSQRLKYLASRGAFDIEALGEKGAIDLI- 474

Query: 496 KSEDPAFSIRIPADIFTLQ----RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              D    +    D+F L     ++    TTK  N+   G   + NL    +  R   L 
Sbjct: 475 ---DSGVLVD-EGDLFDLTEEDLKKSSAYTTKAGNVNAAGKKLLANL----DTARERELW 526

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   AR+LA  Y S Q     I+  +A        L     VG +IAQ+
Sbjct: 527 RVLVALSIRHVGPTAARALAARYASMQAL---IDAPVA-------DLADTDGVGLVIAQS 576

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             +++    +   V+   K     +          +E   +V TGTL+   R +A+E + 
Sbjct: 577 FKDWFTVDWHRDIVDKWAKAGVRMVDDTTDAAPQTLEGLTVVVTGTLENFSRDEAKEAIL 636

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G   +  +S+KT  ++VG+N GSK +KA++LGV I+NEEQF  LLQ
Sbjct: 637 SRGGKAAGSVSKKTSYVVVGENAGSKEDKARELGVPILNEEQFEQLLQ 684


>gi|330889906|gb|EGH22567.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. mori str.
           301020]
          Length = 787

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 221/623 (35%), Positives = 338/623 (54%), Gaps = 50/623 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+         +       + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P+++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV+  ++ AN     + YY ++   R TL Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L            + +GD V+++RAG+VIP+VV ++V  R   A+P   P  C
Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPESARPVQVPQTC 415

Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A +IEGLG 
Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L+ +I   R  
Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLFKAIADSRQP 525

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P VG  +
Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  + +       +  II+    DWL + +   + +
Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQT--LPE 663

Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+ +  +     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779

Query: 719 QQYNTTL 725
            +   T+
Sbjct: 780 TELGVTV 786


>gi|255013963|ref|ZP_05286089.1| DNA ligase [Bacteroides sp. 2_1_7]
 gi|301310547|ref|ZP_07216486.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3]
 gi|300832121|gb|EFK62752.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3]
          Length = 664

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 238/708 (33%), Positives = 372/708 (52%), Gaps = 56/708 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +L  E+  H+  YY  S P I D E+D + +    +  A P+ A   DP+ P  ++G
Sbjct: 5   KIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTRRVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +++    +V H  P LSL   ++ +++R F  R  R      +       E K DGT I
Sbjct: 62  SDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDGTSI 117

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           ++ YEKG+   A  RGDG  G+DV+A I+ I ++P R+   + PE  E+RGEV +   +F
Sbjct: 118 SLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPWAEF 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEIFAKGQYE 256
             LN E        +ANPRNAASG L++ NP  + +R L+ +F + LG+   + A+G YE
Sbjct: 178 DRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGEN--LPAEGHYE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ  R  GF + + +R+  +   I  Y       R  LP   DG+V KV+    Q+ LG
Sbjct: 236 NLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNLG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G ++  A+LHN 
Sbjct: 296 FTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435
           D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   CP
Sbjct: 356 DIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR          AAH C     C  Q   R++HFV+R A NI  +G + ++  +
Sbjct: 405 ECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNI-NIGPETVEDLY 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  ++  AD++TL      +   +  +  + + S  NL  S+ + + +  ER +F
Sbjct: 458 N----AGYVKDSADLYTL------TVADLLRLERWAEKSARNLMSSLEESKQVPFERVLF 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR VG  +A+ L   + S +   Q      A   D    L+ V  +G+ IAQ+++ +
Sbjct: 508 GLGIRFVGETVAKRLVSAFHSIEALEQ------ASLED----LVAVDEIGERIAQSVLSY 557

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEYVTQ 672
           + + +N   V   LKE    +   E+ +++  E  K   +V +GT  K  R + +  + Q
Sbjct: 558 FSDEKNRTLVNR-LKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   S  +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+
Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664


>gi|150007448|ref|YP_001302191.1| DNA ligase [Parabacteroides distasonis ATCC 8503]
 gi|298375424|ref|ZP_06985381.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19]
 gi|166216223|sp|A6LA55|DNLJ_PARD8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149935872|gb|ABR42569.1| DNA ligase [Parabacteroides distasonis ATCC 8503]
 gi|298267924|gb|EFI09580.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19]
          Length = 664

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 238/708 (33%), Positives = 372/708 (52%), Gaps = 56/708 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +L  E+  H+  YY  S P I D E+D + +    +  A P+ A   DP+ P  ++G
Sbjct: 5   KIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTRRVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +++    +V H  P LSL   ++ +++R F  R  R      +       E K DGT I
Sbjct: 62  SDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDGTSI 117

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           ++ YEKG+   A  RGDG  G+DV+A I+ I ++P R+   + PE  E+RGEV +   +F
Sbjct: 118 SLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPWAEF 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEIFAKGQYE 256
             LN E        +ANPRNAASG L++ NP  + +R L+ +F + LG+   + A+G YE
Sbjct: 178 DRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGEN--LPAEGHYE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ  R  GF + + +R+  +   I  Y       R  LP   DG+V KV+    Q+ LG
Sbjct: 236 NLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNLG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G ++  A+LHN 
Sbjct: 296 FTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435
           D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   CP
Sbjct: 356 DIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR          AAH C     C  Q   R++HFV+R A NI  +G + ++  +
Sbjct: 405 ECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNI-NIGPETVEDLY 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  ++  AD++TL      +   +  +  + + S  NL  S+ + + +  ER +F
Sbjct: 458 N----AGYVKDSADLYTL------TVADLLRLERWAEKSAQNLMSSLEESKQVPFERVLF 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR VG  +A+ L   + S +   Q      A   D    L+ V  +G+ IAQ+++ +
Sbjct: 508 GLGIRFVGETVAKRLVSAFHSIEALEQ------ASLED----LVAVDEIGERIAQSVLSY 557

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEYVTQ 672
           + + +N   V   LKE    +   E+ +++  E  K   +V +GT  K  R + +  + Q
Sbjct: 558 FSDEKNRTLVNR-LKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   S  +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+
Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664


>gi|262382012|ref|ZP_06075150.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B]
 gi|262297189|gb|EEY85119.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B]
          Length = 664

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 239/708 (33%), Positives = 373/708 (52%), Gaps = 56/708 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +L  E+  H+  YY  S P I D E+D + +    +  A P+ A   DP+ P  ++G
Sbjct: 5   KIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTRRVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +++    +V H  P LSL   ++ +++R F  R  R      +       E K DGT I
Sbjct: 62  SDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDGTSI 117

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           ++ YEKG+   A  RGDG  G+DV+A I+ I ++P R+   + PE  E+RGEV +   +F
Sbjct: 118 SLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPWAEF 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEIFAKGQYE 256
             LN E        +ANPRNAASG L++ NP  + +R L+ +F + LG+   + A+G YE
Sbjct: 178 DRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGEN--LPAEGHYE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ  R  GF + + +R+  +   I  Y       R  LP   DG+V KV+    Q+ LG
Sbjct: 236 NLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNLG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G ++  A+LHN 
Sbjct: 296 FTSKSPRWAIAYKFQAERAETRLNLVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435
           D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   CP
Sbjct: 356 DIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR          AAH C     C  Q   R++HFV+R A NI  +G + ++  +
Sbjct: 405 ECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNI-NIGPETVEDLY 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  ++  AD++TL      +   +  +  + + S  NL  S+ + + +  ER +F
Sbjct: 458 N----AGYVKDSADLYTL------TVADLLRLERWAEKSAQNLMSSLEESKQVPFERVLF 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR VG  +A+ LA  + S +   Q      A   D    L+ V  +G+ IAQ+++ +
Sbjct: 508 GLGIRFVGETVAKRLASAFHSIEALEQ------ASLED----LVAVDEIGERIAQSVLSY 557

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + + +N   V   LKE    +   E+   N S +++   +V +GT  K  R + +  + Q
Sbjct: 558 FSDEKNRTLVNR-LKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   S  +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+
Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664


>gi|256839697|ref|ZP_05545206.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13]
 gi|256738627|gb|EEU51952.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13]
          Length = 664

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 238/708 (33%), Positives = 372/708 (52%), Gaps = 56/708 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +L  E+  H+  YY  S P I D E+D + +    +  A P+ A   DP+ P  ++G
Sbjct: 5   KIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTRRVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +++    +V H  P LSL   ++ +++R F  R  R      +       E K DGT I
Sbjct: 62  SDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDGTSI 117

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           ++ YEKG+   A  RGDG  G+DV+A I+ I ++P R+   + PE  E+RGEV +   +F
Sbjct: 118 SLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPWAEF 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEIFAKGQYE 256
             LN E        +ANPRNAASG L++ NP  + +R L+ +F + LG+   + A+G YE
Sbjct: 178 DRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGEN--LPAEGHYE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ  R  GF + + +R+  +   I  Y       R  LP   DG+V KV+    Q+ LG
Sbjct: 236 NLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNLG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G ++  A+LHN 
Sbjct: 296 FTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435
           D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   CP
Sbjct: 356 DIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR          AAH C     C  Q   R++HFV+R A NI  +G + ++  +
Sbjct: 405 ECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNI-NIGPETVEDLY 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  ++  AD++TL      +   +  +  + + S  NL  S+ + + +  ER +F
Sbjct: 458 N----AGYVKDSADLYTL------TVADLLRLERWAEKSAQNLMSSLEESKQVPFERVLF 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR VG  +A+ L   + S +   Q      A   D    L+ V  +G+ IAQ+++ +
Sbjct: 508 GLGIRFVGETVAKRLVSAFHSIEALEQ------ASLED----LVAVDEIGERIAQSVLSY 557

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEYVTQ 672
           + + +N   V   LKE    +   E+ +++  E  K   +V +GT  K  R + +  + Q
Sbjct: 558 FSDEKNRTLVNR-LKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   S  +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+
Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDTFLNMLE 664


>gi|83319601|ref|YP_424672.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|123740036|sp|Q2SRE1|DNLJ_MYCCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83283487|gb|ABC01419.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 668

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 235/711 (33%), Positives = 399/711 (56%), Gaps = 50/711 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S EQ    ++ L+++++     YY    P + D+EYD   +   ++ + +P+   S+ P
Sbjct: 1   MSKEQILLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITSDSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    K+GG ++    K+TH  P LSL  ++N ++  +F T++ +     ++    +  E
Sbjct: 61  S---QKVGGTVSEKFLKITHKTPMLSLGNVFNFDEFLEFNTQVSKVSNNLNNE---YVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+  +R I +IP  L ++  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGVLVSAATRGNGVIGEDVTTNVRTIKSIP--LKISKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+SK +F  +N + +      + NPRNAA+G LR+L+   + +R L+ F++    + +  
Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYY-ISDDSP 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QYE + K+  LGF  N           I +Y ++  ++++ L Y IDG+V+K+++ +
Sbjct: 232 NLNQYESILKLNQLGFKTNKETMLCKNLDQIKAYIDKYTNLKNDLDYQIDGIVFKINDKN 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  ++ P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV + GA I+ 
Sbjct: 292 LQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISA 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E   + + F  
Sbjct: 352 ATLNNAEYIK-----------SKDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEVFQP 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
             +CP C S + ++ N           C    +CS + L  L+HF SR+A NI  LG + 
Sbjct: 401 ILYCPNCHSLLEKNENE------VDQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDRS 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+  F  E     I+  +DI+ L+  +     +I  I  FG  S  NL DSIN  +N SL
Sbjct: 454 LEILFNLE----IIQNISDIYKLEEYKD----QILAIENFGLKSYLNLIDSINMSKNNSL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRH+G++ A+ LA+ Y       Q I+N++  + D+   LI++  +G+ +A 
Sbjct: 506 EKVLFGLGIRHIGSKTAKILARKY-------QNIDNLMKASYDE---LIQINSIGESLAL 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQE 668
           +I+++++   N+  +   LK  + +       ++S+  I NK  V TGTL +  R + + 
Sbjct: 556 SIIDWFKIEDNLKLINE-LKSFNINFNYLGAKINSDSIIANKTFVITGTLTR-PREEFKT 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +      +S  +S++TD ++ G+N GSKLEKA++LGV I++E+QF  LL+
Sbjct: 614 LIENNAGKISGSISKQTDYLLAGNNVGSKLEKAKKLGVIIIDEQQFFDLLK 664


>gi|227540068|ref|ZP_03970117.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240084|gb|EEI90099.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300]
          Length = 673

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 227/715 (31%), Positives = 381/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + +++++ L QE+++++  YY  ++ +I D ++D   +  +A+   +P  A   DP
Sbjct: 1   MSAVEIQEKIAQLTQELNHYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG++      V H  P LSL   ++ E+LR F  R+    +K   +   +  E
Sbjct: 58  NSPTRRVGGDITSRFNTVKHRWPMLSLGNTYSQEELRDFDQRV----RKIIGDDFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            K DG  I++ Y+ GK V    RGDG  G++V+A +R I +IP  L  N  PE  E+RGE
Sbjct: 114 LKFDGLSISLTYKDGKLVQGVTRGDGTQGDEVTANVRTIRSIPLTLKTNDYPEEFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL--GKTS 247
           +++ K+ FL LN E    G + YANPRN A+G ++  +  ++ R  L+ F++ L      
Sbjct: 174 IFMHKSAFLRLNKEREENGDQIYANPRNFAAGTIKLQDSAEVARRPLDCFLYFLYMDNRR 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           + F+   +E L+ +R  GF V +  R  +    + S+ N   + R  L Y+IDG+V KV+
Sbjct: 234 KHFST-HWESLEAVRKWGFHVCDHTRLCSNIDDVFSFINYWDTERHNLSYEIDGIVIKVN 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +++ Q++LG  A++PRW  S+KF  ++  T L  I  Q+GRTG +TPVA L+PV++ G  
Sbjct: 293 DYAQQEELGFTAKNPRWATSYKFKAERVETILKSISYQVGRTGAVTPVANLQPVSLAGTT 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN + I  L           D+   D V V++ GE+IPKV+   + +R PDA P
Sbjct: 353 VKRASLHNANEIVRL-----------DLHEQDTVYVEKGGEIIPKVIAANLEKRKPDALP 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F +P+ CP CQ+ +VR+         A H C     C  Q + +++HF+ R   +IEG+G
Sbjct: 402 FHYPTHCPECQTLLVREEGE------AVHYCPNEDGCPPQIIGKMQHFIGRKMMDIEGMG 455

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++ FFK       IR   DI++L+  ++    +++ +  FG  S+ N+   I K + 
Sbjct: 456 NETIETFFKKG----LIRNVVDIYSLKEHEE----ELQQMERFGQKSIDNMLKGIEKSKE 507

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              E+ +F+LGIRHVG  IA+ LA Y+ +    AQ     IA   D          +G  
Sbjct: 508 KPFEKVLFALGIRHVGETIAKKLALYFKNIDALAQASVEEIASVQD----------IGGR 557

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRH 664
           IA+++ ++   P +   ++  LK+        EK V    + +E K  + +G      R 
Sbjct: 558 IAESVHQYLNTPIHQNQIQK-LKDYGLQFEIEEKEVILAGNGLEGKTFLISGVFADFSRE 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +    +   G  + + +S K + ++ GD  G SKL KA++L V I+NE++ L L+
Sbjct: 617 ELTALIESHGGKMVSSISAKLNYLVAGDKMGPSKLAKAEKLQVPIINEQELLVLI 671


>gi|257791950|ref|YP_003182556.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243]
 gi|325829905|ref|ZP_08163363.1| DNA ligase (NAD+) [Eggerthella sp. HGA1]
 gi|257475847|gb|ACV56167.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243]
 gi|325488072|gb|EGC90509.1| DNA ligase (NAD+) [Eggerthella sp. HGA1]
          Length = 708

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 237/722 (32%), Positives = 378/722 (52%), Gaps = 67/722 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           + +L +EI +H   YY    P I D+ +D+L R    +  A P+L    DP+ P  ++GG
Sbjct: 25  IDALRREIEHHSYLYYANDAPEISDAAFDSLMRELRELEAAHPELI---DPSSPTQRVGG 81

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +      V H+    SL+   ++++L  +I R+   + +     +    E KIDG+ I 
Sbjct: 82  YVGEQFAPVRHARRMYSLDNAMDLDELDAWIERVTEAFGRM----VPVVCELKIDGSSIA 137

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---------SLNIPEIIEVRGEV 191
           + YE G+ + AA RGDG +GEDV+A +R +  +P  L           + P  +E+RGEV
Sbjct: 138 LTYEDGRLMRAATRGDGTTGEDVTANMRTVKDVPLRLRQGALGGLRDADAP--VELRGEV 195

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K+ F ALN   +  G++ +ANPRNAA+G LR+ +P+    R L+ F++ +     + 
Sbjct: 196 YMPKSSFDALNVAAVENGKQAFANPRNAAAGSLRQKDPSITANRDLSTFIYAVADERALN 255

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+GQ+E+L  +R  GF VN  V    T   + ++     + R  LPY+IDG+V KV+ F+
Sbjct: 256 AEGQWELLAWLREAGFHVNPDVELCQTREEVHAFCERAVARREDLPYEIDGVVVKVNSFA 315

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ +G  AR+PRW ++ KF  ++ +T L DI +Q+GRTG LTPVA L+PV + G+ +  
Sbjct: 316 QQESMGYTARAPRWAVAFKFPPEEKTTLLRDITVQVGRTGKLTPVAELDPVVVAGSTVAR 375

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED ++            +D+RVGD V+V++AG+VIP+V+  ++  R  DA  +  
Sbjct: 376 ATLHNEDEVQ-----------RKDVRVGDTVIVRKAGDVIPEVLGPVLALRPADAVQWEM 424

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S V+R+     G++    RC   + C AQ LERL H+ SR A +I+G+G++ 
Sbjct: 425 PRTCPSCGSPVIRE----EGEV--DFRCI-SIDCPAQALERLLHWASRGAMDIDGMGEEI 477

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQT-----STTKIENILGFGDVSVTNLYDSINKR 545
           +    +S      +   AD +TL   + +        K    +  G      L  +I++ 
Sbjct: 478 VSRLVES----GRLSDVADYYTLDEVELSLLDMGRVNKDGEPIRLGSTVAKKLVAAIDES 533

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     R +F LGIRHVG  IA  LA  Y S       I  ++  + +D   L  +  VG
Sbjct: 534 RTRPFARALFGLGIRHVGKTIAELLAAAYPS-------IEALMEASEED---LAVIDGVG 583

Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTL- 658
             IA++   F + P N   +E L      L + +   G   + +   +     V TG+L 
Sbjct: 584 PKIARSAYLFLRTPDNAAVIERLRSHGVALADEAADAG---EQLPQTLAGLTFVLTGSLV 640

Query: 659 -QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
              + R +A   +   GA VS  +S+KT  ++ G+  GSK +KA  L V +++E   L +
Sbjct: 641 ESGMTRDEAGAVLKARGAKVSGSVSKKTSFVVAGEAAGSKYDKAVALSVPVLDEAALLRI 700

Query: 718 LQ 719
           L+
Sbjct: 701 LE 702


>gi|160914436|ref|ZP_02076651.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991]
 gi|158433594|gb|EDP11883.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991]
          Length = 664

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 234/698 (33%), Positives = 377/698 (54%), Gaps = 52/698 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  +   ++Y    YY   KP + D EYD   +    +   FP   +  DPN    ++G
Sbjct: 8   ELRKILDRLAYE---YYVLDKPSVSDQEYDRYYQELLKLEDEFP---QYRDPNSITQRVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G +  +  KV+H    LSL+  +N+EDL  F  R+ +  +  +     + +E K+DG  I
Sbjct: 62  GVVLDAFEKVSHKRRMLSLDNAFNLEDLMAFDERVRQSVKNPE-----YVVELKMDGLAI 116

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y  G+FV A  RGDG  GEDV+  +R I +IP  + +++   +EVRGEV + K  F 
Sbjct: 117 SLHYHNGRFVQAVTRGDGLVGEDVTNNVRTIASIP--MHIDMEGDLEVRGEVIMPKKSFE 174

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258
           ALN++    G + +ANPRNAA+G +R+L+     +R L+ +++      +       E L
Sbjct: 175 ALNEQRRKQGEEEFANPRNAAAGSIRQLDSRIAASRKLDAYLYYFEGAQQHAMHTHEEAL 234

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  +   VN   +       +  +  EM   R+ LPY+IDG+V KV++      LG  
Sbjct: 235 EALEAMRIKVNPLRKVCKNMQEVWQFIQEMSERRNDLPYEIDGMVLKVNDLHAWDLLGTT 294

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A++PR+ I++KF  ++  T+LLDI + +GRTG +TP A LEPV + G  ++ ATLHNED 
Sbjct: 295 AKAPRYAIAYKFPAEEVVTKLLDIVLSVGRTGRITPNAVLEPVRVAGTTVSAATLHNEDM 354

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           IK            +D+R+ D V++++AG++IP+VV  +   R+     + FP  CP C 
Sbjct: 355 IK-----------EKDVRINDDVIIRKAGDIIPEVVRSLPERRNGTQGIYKFPQICPFCG 403

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S++VR  +       AAH C     C A+ +  + HF SRDA NI+ LG ++++FF K  
Sbjct: 404 SKLVRFADE------AAHYCMNQ-DCPARIVRGMIHFASRDAMNIDTLGDKKIEFFHKQ- 455

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
              F +    DI+ L   ++    +I  + GF + S   +  +I   +   LE  +F LG
Sbjct: 456 --GF-LNTIEDIYELSLHKE----EILALEGFQEKSFQKMILAIEASKERPLEDLLFGLG 508

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IR VG + AR LAK Y         I++++A    +   L  +  +G + AQ+I  ++  
Sbjct: 509 IREVGKKAARVLAKTY-------GNIDDLMAAEEAE---LTAIKDIGVVTAQSIRAYFAE 558

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           P+N   + A LK     +   ++ +   I   K +V TGTLQ ++R++A+  + +LGA V
Sbjct: 559 PKNKELI-AHLKGFGLRMDTDKEVIKESIFTGKTVVLTGTLQYLKRNEAKALLERLGANV 617

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           S  +S+KTD++I G+  GSKL KA++LGV  M+EE F+
Sbjct: 618 SGSVSKKTDLVIYGEASGSKLSKAKELGVATMDEEAFM 655


>gi|149173204|ref|ZP_01851835.1| DNA ligase [Planctomyces maris DSM 8797]
 gi|148848010|gb|EDL62342.1| DNA ligase [Planctomyces maris DSM 8797]
          Length = 671

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 224/713 (31%), Positives = 372/713 (52%), Gaps = 61/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E+  L +++ +H+  YY  +KP I D EYD L +R + +    P+    + P  P  K
Sbjct: 4   RTEIEELRKQLEHHNRLYYLDAKPEITDREYDRLMKRLEQLETDHPEY---DSPESPTKK 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG        V H +P LS++ I+ +E L +F  RI +   +   + +  T E KIDG 
Sbjct: 61  VGGAPIEGFQTVAHRLPMLSIDNIFELEGLTEFEARICKLLGQ---DQVELTAEYKIDGV 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ YE+G+ +    RGDG  G+D++  +R I  +P R+ + N PE++EVRGE YIS +
Sbjct: 118 AVSLIYEEGRLIQGLTRGDGQQGDDITHNVRTIIGVPLRLETENPPELLEVRGEAYISNS 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           DF  LN EM   G++P+AN RN  +G L+ L+P     R + FF HG+G  + +  +   
Sbjct: 178 DFQVLNVEMQEQGKEPFANSRNTTAGGLKLLDPKLCAKRKIRFFAHGIGAMAGVDYQTHI 237

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L  ++ +G P   GV+        + +   M      L +++DG+V KV+ F  +++L
Sbjct: 238 EYLAAIQEMGIPATPGVKAFPDLKTTMEHVQTMMDDLHALDFEVDGIVLKVNRFDQREEL 297

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  ++SPRW++++K+   +A TR   I  Q+G+TG +TPVA LEPV I G  ++ A+LHN
Sbjct: 298 GNTSKSPRWVVAYKWERYEAVTRAESIVFQVGKTGTVTPVANLEPVPIAGTTVSRASLHN 357

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D ++ L            I++GD V+V++AG++IP VV +  + R    Q   FP+ CP
Sbjct: 358 RDEMERL-----------GIQIGDWVVVEKAGKIIPHVVRVEEHRRDGSQQELEFPTHCP 406

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +++D   + G  +   RC     C A   E L+++ SR A +IEG+G + ++   
Sbjct: 407 ECDTLLIQD---EGGVYI---RCPNP-NCPAMLRETLRYYASRQAMDIEGMGIKMIEQLL 459

Query: 496 KSEDPAFSIRI------PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                     I        D+  L+R+              G+ S+ NL   I   +   
Sbjct: 460 GQGLLKGLADIYRLHNYYGDLVALERQ--------------GEKSIENLLAGIENSKTQP 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R +  L IRHVG+  AR L K + +    AQ+    +A  ++          +G +IA
Sbjct: 506 LWRLLTGLNIRHVGSSNARILEKQFGTIDEIAQQSVEELAAVDE----------IGPVIA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHK 665
           +++  F+ +      ++  LK    ++G   +  ++E    ++ K LV TGTL +  R +
Sbjct: 556 ESVYTFFHSDFGTKLIDD-LKSAGLNMGSPVEKTTTEAAGILDGKTLVVTGTLTQFTRDE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+E + + G   S  +S KTD ++ G+  GSKL KA++L V ++ E +FL LL
Sbjct: 615 AKELIRKHGGKASGSVSSKTDYLVAGEKAGSKLSKAEELNVPVLTEIEFLELL 667


>gi|226226196|ref|YP_002760302.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27]
 gi|254781336|sp|C1A6H2|DNLJ_GEMAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226089387|dbj|BAH37832.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27]
          Length = 689

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 242/712 (33%), Positives = 375/712 (52%), Gaps = 59/712 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++E+AR+    L +++      YY   +P + D EYD L R    I   +P L  +ED  
Sbjct: 12  TVERARE----LREQLGTAQHEYYVLDRPTLSDQEYDRLFRELQGIEAEYPTLC-TED-- 64

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G  +  +     H +  LSL+  +++ +L  F   + R        S  +T+E 
Sbjct: 65  SPTRRVGAPVQSAFSPHRHLVRMLSLDNAFDLSELEDFEQSLKRVVGDAIHTS-GYTVEL 123

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           KIDG  + + Y +G  V AA RGDG  GEDV+A +R I  +P R+   N P ++EVRGEV
Sbjct: 124 KIDGAAVALTYREGVLVTAATRGDGTDGEDVTANVRTIRGVPLRLHGDNHPPLMEVRGEV 183

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG-LGKTSEI 249
           Y+    F  +N+  +A G   Y NPRNAA+G +R+L+  +   R L FF +  +      
Sbjct: 184 YLPFAGFERMNEARVAAGEPVYVNPRNAAAGSMRQLDSANTAARPLRFFGYAAVLPDGSA 243

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK-SIRSTLPYDIDGLVYKVDE 308
            A+ Q+E+L+++   G PV    ++ +T     ++   ++   R+TL + IDG V KV++
Sbjct: 244 PARSQWELLEQLSAWGVPVAPHRQRCHTIQEAEAWATVVEHETRATLGFAIDGGVVKVND 303

Query: 309 FSLQKQLGERA-RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            +LQ +LG RA R+PRW ++ KFA   A T+L  ID+ +GRTG+LTP A LEPV++GGA 
Sbjct: 304 MALQDELGIRADRTPRWGVARKFAPDMALTKLRRIDVNVGRTGVLTPFAVLEPVDVGGAT 363

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +T A+LHN D I             +D+R GD V V RAG+VIP V+  +  +R    QP
Sbjct: 364 VTFASLHNADQI-----------AAKDLREGDTVQVVRAGDVIPYVLGPVPEQRDGSQQP 412

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +S P+ CP C + V R      G  VA + C   +AC  +QLE L HF S+DA +I+GL 
Sbjct: 413 WSMPTQCPRCNTPVER-----YGDDVAVY-CP-NVACPGRQLEGLVHFSSKDALDIDGLS 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
             ++         A  +   AD+F +   Q TS  +      F   S  NL  +I   + 
Sbjct: 466 YARIQQLLD----AGLVHDVADLFDITVDQLTSLER------FAKKSAENLVAAIAAAKQ 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R +F LGIRHVGA+ A+ L++ Y S         + + +   + L  +R   +G I
Sbjct: 516 QPLSRLMFGLGIRHVGAQAAQLLSRQYGSL--------DALMNATAEQLGAVRG--IGSI 565

Query: 608 IAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IAQ++  ++ +P     +E L    L+   P    +       +    +V TGTL  + R
Sbjct: 566 IAQSVASYFADPTTRALMERLRARGLRFDEP----NAVQADGVLTGATVVLTGTLPSLSR 621

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +A   V Q G  V++ +S+KT  ++ G+  GSKL+KA++LGV ++ E + L
Sbjct: 622 GEATALVEQAGGRVTSSVSKKTTFVVAGEEAGSKLDKAKELGVTVLTEAELL 673


>gi|119356312|ref|YP_910956.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266]
 gi|166215573|sp|A1BDQ5|DNLJ_CHLPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119353661|gb|ABL64532.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266]
          Length = 676

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 227/711 (31%), Positives = 371/711 (52%), Gaps = 52/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           RK +  L +EI+ H+  YY  ++P I D E+D L  R   +  AFPD      P+ P ++
Sbjct: 8   RKAIEELRREINRHNTLYYVDARPEISDYEFDRLMERLIELEKAFPDFV---TPDSPSHR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +      V H  P LSL   +++ ++  F +R+ +    +         E K DG 
Sbjct: 65  VGGAITREFPSVRHREPMLSLSNTYSLAEVEDFYSRVKKLLLVEGVREQDMAAELKFDGV 124

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI------IEVRGE 190
            I++ Y  G  V  A RGDG  G+D++  ++ + ++P R+   ++P I      IE+RGE
Sbjct: 125 AISLLYRDGLLVQGATRGDGTEGDDITTNLKTLSSVPLRIPLTSLPVIEGIERDIEIRGE 184

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE- 248
           V++ K+DF  LN+      R  +ANPRNA +G L+  +  ++ R  LNF  + L  +S+ 
Sbjct: 185 VFMQKDDFARLNEARPEEDR--FANPRNATAGTLKLQDSGEVARRRLNFVAYYLRLSSQD 242

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            F   QY+ L+ +  LGF      R       I  +       R  LPY+ DG+V K+++
Sbjct: 243 SFLLTQYDRLELLGQLGFFTGKHYRLCRDMKEIGDFIGYWAVERWNLPYETDGVVLKLND 302

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +L  ++G  A+SPRW I++K+  +QA T L  +  Q+GR G +TPVA LEPV + G+ +
Sbjct: 303 VALWPRIGATAKSPRWAIAYKYPAQQAKTVLQGVAFQVGRLGTVTPVAELEPVRLAGSTV 362

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + +TLHN D I+ L            + + DRV+++++GEVIPKV+ ++++ER  +A+P 
Sbjct: 363 SRSTLHNFDEIERL-----------GLMLHDRVIIEKSGEVIPKVIRVVLDERPENAEPV 411

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             PS CP C + + +  N        ++ C    +C AQ   RL HF SR+A +I+ LG+
Sbjct: 412 GVPSVCPECGASLEKPENE------VSYYCPDQDSCPAQIRGRLLHFASRNALDIQSLGE 465

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +    +       +R   D++ LQ+ Q      +E +   G  S  NL  ++ + R  
Sbjct: 466 SLVAQLVQKG----LVRDAGDLYLLQQPQ------LEALERMGRKSAHNLLRALQESREK 515

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S ER +++LGIRHVG   AR LA+ Y            + A  N     L  VP VG ++
Sbjct: 516 SYERLLYALGIRHVGQATARELARAY----------ETVEALQNASEEELATVPDVGPVV 565

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A ++ +++        +  L     P      +K ++   E   ++FTG L++  R +A 
Sbjct: 566 AHSVKDYFSKSSTQMLLRKLRDAGFPLRFTGPQKLINRNFEGVNVLFTGALERYGRQQAS 625

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E V Q G  V   +SR T +++ G  PGSKL+KA++LGVK+++E++F  +L
Sbjct: 626 ELVQQRGGRVVGSVSRSTGVVVAGSEPGSKLDKARKLGVKVISEDEFNAML 676


>gi|265764018|ref|ZP_06092586.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16]
 gi|263256626|gb|EEZ27972.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16]
          Length = 665

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 233/707 (32%), Positives = 371/707 (52%), Gaps = 52/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  ++  H+  YY  + P I D E+D L R    +    P+    +D N P  +
Sbjct: 4   KEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK + A  RGDG  G+DV+  ++ I +IP +L   N PE+ E+RGE+ +   
Sbjct: 117 SISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLILHGDNYPEVFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L     +   G Y
Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    Q+ L
Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + CP
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSARFMIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R      G+  AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++      Q +T  I  +   GD S  N+   I + + +  ER IF
Sbjct: 459 R----LGLIHDTADLY------QLTTDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVIF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +           +I    N D  +LI +  +G+ IA++I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSF----------KDIEELENADLETLINIDEIGEKIARSILNY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + N  N   V   LK     + R E+++S    ++  + +V +G      R + ++ + +
Sbjct: 559 FANESNRKLV-GRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTYHSRDEYKDLIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 618 HGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|152965283|ref|YP_001361067.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
 gi|190359261|sp|A6W7L4|DNLJ_KINRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151359800|gb|ABS02803.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
          Length = 696

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 226/710 (31%), Positives = 356/710 (50%), Gaps = 47/710 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR     L  +I      YY  +   + D +YDAL+R   A+    P L     P+ P 
Sbjct: 12  EARHRWEDLVAQIEAARFAYYVRNSSPLSDGQYDALERELRALEEQHPQL---RTPDSPT 68

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +GG  +     V H    LSL+  ++ ++L  +  R+    +++      +  EPKID
Sbjct: 69  QTVGGTFSTEFTTVDHPERMLSLDNAFSTDELSAWAARV----EREVGAGARYLCEPKID 124

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  I + YE G+ V    RGDG +GEDV+  +R +  +P R+   ++PE +EVRGEV+  
Sbjct: 125 GLAIDLVYEDGRLVRGVTRGDGRTGEDVTFNVRTVEDVPHRLTGADVPEFLEVRGEVFFH 184

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
            + F A+N  ++  G+ P+ANPRNAA+G LR+ +P    TR L   VHG+G    +    
Sbjct: 185 LDGFAAINAGLVEAGKPPFANPRNAAAGSLRQKDPRVTATRPLRMLVHGVGARRGMENDT 244

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q    +K+   G P +  V+  +T   +  Y       R  + ++IDG+V KVD+  LQ+
Sbjct: 245 QSGAYEKLAAWGLPTSPRVKVVDTLDEVAEYVRFYGEHRHDVEHEIDGVVVKVDQVPLQR 304

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP A LEPV + G+ +  ATL
Sbjct: 305 RLGSTSRAPRWAIAYKYPPEEVTTSLLDIQVNVGRTGRVTPFAVLEPVKVAGSTVAMATL 364

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN         + +V+R G  + +GD V+V++AG+VIP+V+  +V  R    + F  P+ 
Sbjct: 365 HN---------ASEVVRKG--VLIGDTVVVRKAGDVIPEVLGPVVESRTGAEREFVMPTV 413

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +               RC    +C AQ  ER+ H   R +F++E LG +    
Sbjct: 414 CPECGTPLAHQRADDVDI-----RCPNSRSCPAQLRERVFHLAGRGSFDVEALGDKAAAA 468

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTS----TTKIENILGFGDVSVTNLYDSINKRRNIS 549
             +    A  I    D+FTL           TTK   +   G   + NL+D    R++  
Sbjct: 469 LLQ----AGVIADEGDLFTLTEDDLVGVPLFTTKAGTVSANGRRLLANLHD----RKDQP 520

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R +  L IRHVG   AR+LA  + S +         IA              VG  IA
Sbjct: 521 LWRVLVGLSIRHVGPTAARALADRFGSMEAIEAATAEDIASAEG----------VGPTIA 570

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +A+VE+     +   V    +         +++    +E   +V TG+L    R +A+E 
Sbjct: 571 EAVVEWLAVDWHRDVVRKWREAGVRMADERDESTPRTLEGLTIVVTGSLSGFSRDEAKEA 630

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   G   S+ +S+KT  ++VG+  GSK +KA+QLGV +++EE F+ LL+
Sbjct: 631 VLSRGGKASSAVSKKTSFVVVGEAAGSKADKAEQLGVPVLDEEGFVALLE 680


>gi|301163404|emb|CBW22954.1| putative DNA ligase [Bacteroides fragilis 638R]
          Length = 665

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 233/707 (32%), Positives = 371/707 (52%), Gaps = 52/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  ++  H+  YY  + P I D E+D L R    +    P+    +D N P  +
Sbjct: 4   KEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL   N PE+ E+RGE+ +   
Sbjct: 117 SISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F ALN E  A     +ANPRNAASG L+  N   + +R L+ +++ L     +   G Y
Sbjct: 177 VFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF ++  + +  T   +  + N     R  L    DG+V KV+    Q+ L
Sbjct: 236 ENLQEAAKWGFKISPLMHKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + CP
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R      G+  AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++ L      +T  I  +   GD S  N+   I + + +  ER IF
Sbjct: 459 R----LGLIHDTADLYRL------TTDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVIF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +   +             N D  +LI +  +G+ IA++I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIEEL----------ENADLETLINIDEIGEKIARSILNY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + N  N   V+  LK     + R E+++S    ++  + +V +G      R + ++ + +
Sbjct: 559 FANESNRKLVDR-LKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 618 HGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|145356969|ref|XP_001422695.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582938|gb|ABP01012.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 755

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 255/773 (32%), Positives = 386/773 (49%), Gaps = 99/773 (12%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           HD  YY  ++P+I DSEYD ++ R DAIA A P  A++      +       +  L K+ 
Sbjct: 2   HDGKYYNDAEPVISDSEYDGMRARYDAIAAAHPTAAKAGGARARVGATPDGAS-GLEKIA 60

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRF-----WQKKDDNSIFFTLEPKIDGTMITIRYEK 145
           H++P  SL   +++  +  F+ R+ +       +     +I +  EPK+DG   ++RYE 
Sbjct: 61  HAVPMRSLGNAFDVGQVEAFMKRVEKLRGETEGEAATTTAIEYCAEPKVDGASASLRYEN 120

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G+ VYA  RGDG  GEDV+  +     +P  L+   P ++E+RGEV+++  DF  +N E 
Sbjct: 121 GELVYAVSRGDGEMGEDVTRHLIGARGVPMKLAEPYPAVLEIRGEVHVADEDFQRVNAER 180

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS----EIFA--KGQYEMLQ 259
            A G + + N RNAA+G +R L   D    L F  +G G       E  A  + Q E L 
Sbjct: 181 AATGLRVFKNARNAAAGAMRTLVVDDNQMPLRFLAYGWGAVGASNEETNAPWRTQSEFLS 240

Query: 260 K-MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             +   GF     +  A T   ++  Y+ ++  R T+PY+IDG+VYKV+   LQ  LG  
Sbjct: 241 AFLPAQGFDAVPFLGVAKTIGELIEAYDALEIARPTMPYEIDGVVYKVNSVELQTALGAD 300

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           AR PRW I+HKF    A T L  I+IQ+GRTG LTPVA L+PV+IGGA I+ ATLHN D 
Sbjct: 301 ARQPRWAIAHKFTAMSAVTTLRAIEIQVGRTGALTPVALLDPVDIGGASISRATLHNFDE 360

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII------VNERHPDAQPFS--- 429
           I             + ++VG +V V+RAG+VIP+VV +        +    D +P     
Sbjct: 361 IA-----------RKHLKVGAQVTVERAGDVIPRVVSLAGDDLAEASAYAEDIKPLPEWL 409

Query: 430 FPSFCPICQSRVVR-DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            PS CP C S VVR  L+     + +  RCTGGL C +Q +ERL HF +RDA +I GL +
Sbjct: 410 PPSKCPDCGSSVVRAPLSASKTAMGSIVRCTGGLKCPSQSMERLLHFCARDALDIRGLAR 469

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDV-------------- 533
             L+   +       ++ PADIFTL+RR    S   +     +  V              
Sbjct: 470 GTLETLHREG----VVKTPADIFTLERRFGPDSGDAVPTWWRYAGVKNSKGEIKHGSDGL 525

Query: 534 --SVTNLYDSINKRR-NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--- 587
             S   L+ +I  RR  + L RFI++LGI ++GA  A+ LA +Y S   F +        
Sbjct: 526 KQSAVKLFQAIEVRRQGVPLHRFIYALGIPNIGAHTAKVLATHYGSLAAFKKAALAAAKG 585

Query: 588 ----IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN------ICAVEALLKEVSPSIG 637
               +AH      +L  V  VG ++AQ++V+F+  P N      I A   ++ +   S  
Sbjct: 586 GPASLAHA-----ALTHVDGVGPVLAQSLVDFWGEPGNAFIVDEIIATGVVVLDADASSS 640

Query: 638 RHEKN------------------------VSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +++ +                         ++++   K++FTGT+    R    + +   
Sbjct: 641 KNQPSPRFAEPASSSSVSPTPSPTVPSPEPTADLRGMKILFTGTIDGFSRDDVHDLIRAA 700

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           G  V++ LSRKT +++ G   G SKL KA+ L V I++  +F+  L   + +L
Sbjct: 701 GGDVASTLSRKTALVVAGVGAGPSKLAKARDLAVPIVDASRFVSALTSGDGSL 753


>gi|256383839|gb|ACU78409.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384670|gb|ACU79239.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455996|gb|ADH22231.1| DNA ligase, NAD-dependent [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 668

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 238/712 (33%), Positives = 398/712 (55%), Gaps = 52/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++A   ++ L+++++     YY    P + D EYD   +   ++   +P+L  S+ P
Sbjct: 1   MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITSDSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    K+GG ++    K+TH  P LSL  +++ ++   F T+I +     D+    +  E
Sbjct: 61  S---QKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQISKVSNTLDNQ---YVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+  ++ I +IP  L +N  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINVKTIKSIP--LKINKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEI 249
           Y+SK +F  +N + +      + NPRNAA+G LR+L+   + +R L+ F  + +   S  
Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNN 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               QY+ + K+  LGF  N           I +Y ++  ++++ L Y IDG+V+K+++ 
Sbjct: 233 LT--QYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDK 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ  LG  ++ P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV + GA I+
Sbjct: 291 NLQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATIS 350

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E   + + F 
Sbjct: 351 AATLNNAEYIK-----------SKDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEVFQ 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
              +CP C S + ++ N           C    +CS + L  L+HF SR+A NI  LG +
Sbjct: 400 PILYCPNCHSLLEKNENE------VDQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDR 452

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  F  +     I+  +DI+ L+  +      IEN   FG  S  NL DSIN  +N S
Sbjct: 453 SLEILFNLK----IIQNISDIYRLEEYKD-EILAIEN---FGLKSYLNLIDSINMSKNNS 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LE+ +F LGIRH+G++ A+ LA+ Y       Q I+N++  + D+   LI++  +G+ +A
Sbjct: 505 LEKVLFGLGIRHIGSKTAKILARKY-------QNIDNLMKASYDE---LIQINSIGESLA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQ 667
            +I+++++   N+  ++  LK  + +       ++S+  I NK  V TGTL + +     
Sbjct: 555 LSIIDWFKIEDNLKLIDE-LKSFNINFNYLGAKINSDSIIANKSFVITGTLTRPREEFKT 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                 G V+ +I S++TD ++ G+N GSKLEKA++LGVKI++E+QF  LL+
Sbjct: 614 LIENNAGKVIGSI-SKQTDYLLAGNNVGSKLEKAKKLGVKIIDEQQFFDLLK 664


>gi|255535523|ref|YP_003095894.1| DNA ligase [Flavobacteriaceae bacterium 3519-10]
 gi|255341719|gb|ACU07832.1| DNA ligase [Flavobacteriaceae bacterium 3519-10]
          Length = 667

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 223/710 (31%), Positives = 375/710 (52%), Gaps = 51/710 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  ++++ +L +EI  H+  YY   +P I D E+D   +    +   FP+     D N P
Sbjct: 3   ENIQQKIDALRKEIHQHNYSYYSLDEPTISDFEFDLKLKELQDLELQFPEFY---DNNSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG++  +   V H     SL+  ++  DL ++  RI    +K  +  + F  E K 
Sbjct: 60  TLRVGGQITKNFPTVQHQFRMFSLDNSYDFNDLEEWEKRI----RKTLNEPVEFVAELKY 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I+I YE GK   A  RGDG  G+++++ ++ I  IP  L  + PE   +RGE+Y++
Sbjct: 116 DGASISILYENGKLNEAVTRGDGFQGDEITSNVKTISQIPMQLHGDFPERFFMRGEIYLT 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
             +F  +N      G  P+ NPRN ASG L+  +  ++  R L+  ++    +    A+ 
Sbjct: 176 HQNFEKINKRREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSAVLYQF-ISENTAAQT 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E+LQK +  GF +++  +       + ++ N     R TL +DIDG+V KV++ + Q+
Sbjct: 235 HWELLQKAKSWGFRISDQAKLCADLDEVKAFINFWDENRHTLAFDIDGIVVKVNDLAQQR 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW +++K+  ++A T L  +  Q+GRTG +TPVA L+PV + G ++  A+L
Sbjct: 295 VLGYTAKSPRWAMAYKYKAEKAETELQTVTYQVGRTGAITPVANLKPVLLAGTVVKRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED I+ L            +   D V V++ GE+IPK+V + + +R+P      +   
Sbjct: 355 HNEDIIRKL-----------GLYEHDFVYVEKGGEIIPKIVGVNLAKRNPANAEIQYIKN 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + ++R  +       A H C   L C  Q + R+ H+VSR A NIE LG + ++ 
Sbjct: 404 CPECSTALIRVEDQ------AIHFCPNELHCPPQVIGRMIHYVSRKALNIENLGSETIEQ 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            ++ +     +  PAD + L + Q     ++       + S  N+   I K + I+ E+ 
Sbjct: 458 LYREK----LVENPADFYALTKEQLLPLERM------AEKSAQNIITGIEKSKEIAFEKV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F +GI+HVG  +A+ L K      NF    N+I    N     L++V  +G  IA++I 
Sbjct: 508 LFGIGIKHVGETVAKKLVK------NF----NSIDDLKNATAAELVQVEDIGLKIAESIT 557

Query: 614 EFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           EF++NP N+  +E L     ++      HE  +S+ ++ K  +FTG L    R  A+E V
Sbjct: 558 EFFKNPENVLMIERLKSYGVKLEKGADTHEV-LSNALDGKTFLFTGKLSLFTRDDAEEMV 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
            + G    + +S+  D ++VG+  GSKL+KAQ++G + I++E+QFL LLQ
Sbjct: 617 EKHGGKNISAVSKNLDFLVVGEKAGSKLKKAQEIGTITILDEQQFLDLLQ 666


>gi|171779630|ref|ZP_02920586.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281732|gb|EDT47166.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 652

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 228/698 (32%), Positives = 369/698 (52%), Gaps = 57/698 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L  E++ +   YY   +P + DSEYD L R    +  A PDL     P+ P   
Sbjct: 2   KERIQKLVDELNQYRKEYYTQDQPTVSDSEYDKLYRELVELEKANPDLIL---PDSPTQA 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG 
Sbjct: 59  VGGLILDGFEKYQHETPLYSLQDAFSREELDDFDRRV-----KAEFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ Y  G     A RGDG  GE+++  ++ I  IP    L  P  I VRGE Y+ +  
Sbjct: 114 SVSLVYVDGVLQVGATRGDGSIGENITENVKRIKDIPH--KLEEPLTITVRGEAYLPRES 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255
           F  +N+E    G+  +ANPRNAA+G LR+LN   + +     FF   +  TS      Q 
Sbjct: 172 FDKINEERRESGQSEFANPRNAAAGTLRQLNTAVVAKRNLATFFYQEVASTS---MTTQN 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L+++   GF VN      ++   I ++  E+ + R +LPYDIDG+V KV+  ++Q++L
Sbjct: 229 DVLEELSRYGFSVNPRRITTSSMEDIWAFIQEVAAERDSLPYDIDGIVIKVNSLAMQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR+GD V+V +AG++IP V+ ++ ++R+    P   P  CP
Sbjct: 349 VDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVESKRNKQV-PMPIPETCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   F
Sbjct: 397 SCGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            ++     +   ADI+ L      S   +  + GF + S   LY++I   +  S E+ +F
Sbjct: 450 TAD----LVHDVADIYRL------SVEDLLTLDGFKEKSAEKLYNAIQASKANSAEKLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRHVGA+ +R L + +       + I N++A + +   ++  +  +G +IA+++  +
Sbjct: 500 GLGIRHVGAKASRQLLEVF-------ESIENLVAADEE---AIANIDGLGTVIAKSLRSY 549

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +   +    + A LK    +     K VS  +++    +V TG LQ++ R++A+E +  L
Sbjct: 550 FAK-KEAEELLAELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLQRLTRNEAKEKLQDL 608

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           GA V+  +S+KTDI++ G + GSKL KAQ LG+ + +E
Sbjct: 609 GAKVTGSVSKKTDIVVAGADAGSKLTKAQALGIDVRDE 646


>gi|255691906|ref|ZP_05415581.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565]
 gi|260622459|gb|EEX45330.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565]
          Length = 666

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 236/705 (33%), Positives = 370/705 (52%), Gaps = 53/705 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P  ++G 
Sbjct: 7   IEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEEAHPEY---KDENSPTMRVGS 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++N +  +V H  P LSL   ++ E++  F  R+    +K  +       E K DGT I+
Sbjct: 64  DLNKNFTQVAHKYPMLSLANTYSEEEVTDFYERV----RKALNEDFEICCEMKYDGTSIS 119

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFL 199
           + YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ +    F 
Sbjct: 120 LTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWEVFE 179

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEML 258
           ALN E        +ANPRNAASG L+  N + + +R L+ +++ L     +   G YE L
Sbjct: 180 ALNREKEVREEPLFANPRNAASGTLKLQNSSVVASRKLDAYLYYL-LGENLPCDGHYENL 238

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           Q+    GF +++ +R+  T   +  + N     R  LP   DG+V KV+    QK LG  
Sbjct: 239 QEAAKWGFKISDLMRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNLGFT 298

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN D 
Sbjct: 299 AKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNADI 358

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPSFCPIC 437
           I+GL           D+ +GD V V++ GE+IPK+  + V+ R     +   F + CP C
Sbjct: 359 IEGL-----------DLHIGDMVYVEKGGEIIPKITGVDVDARSFMVGEKVRFITTCPEC 407

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR      G+  AAH C    AC  Q   +++HF+SR A +I+GLG + +D F++ 
Sbjct: 408 GSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMDIDGLGPETVDMFYR- 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   AD++ L      +   I+ +   G+ S  N+   I + + +  ER IF+L
Sbjct: 461 ---LGLIHNTADLYKL------TIDDIKGLERMGEKSAENIVTGIAQSKTVPFERVIFAL 511

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +AK +           NI      D   L+ +  +G+ IAQ+I+ ++ 
Sbjct: 512 GIRFVGETVAKKIAKSF----------ENIDELKRADLERLVSIDEIGEKIAQSILTYFA 561

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           N  N C +   LKE      R E+++S    ++  + +V +G      R + +E + + G
Sbjct: 562 NEAN-CELVNRLKEAGLQFYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKELIEKNG 620

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
                 +S KT  I+ GDN G +KLEKAQ+LG+ I++E++FL L+
Sbjct: 621 GKNVGSISAKTSFILAGDNMGPAKLEKAQKLGITILSEDEFLKLI 665


>gi|42561289|ref|NP_975740.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|81400468|sp|Q6MSK8|DNLJ_MYCMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|42492787|emb|CAE77382.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301320499|gb|ADK69142.1| DNA ligase (NAD(+)) [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 668

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 237/712 (33%), Positives = 398/712 (55%), Gaps = 52/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++A   ++ L+++++     YY    P + D+EYD   +   ++   +P+L  S+ P
Sbjct: 1   MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLETLYPELITSDSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    K+GG ++    K+TH  P LSL  +++ ++   F T+I +     D+    +  E
Sbjct: 61  S---QKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQISKISNTLDNQ---YVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+   R I +IP  L ++  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINARTIKSIP--LKISKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEI 249
           Y+SK +F  +N + +      + NPRNAA+G LR+L+   + +R L+ F  + +   S  
Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNN 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               QY+ + K+  LGF  N           I +Y ++  ++++ L Y IDG+V+K+++ 
Sbjct: 233 LT--QYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDK 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ  LG  ++ P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV + GA I+
Sbjct: 291 NLQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGAKIS 350

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E     + F 
Sbjct: 351 AATLNNAEYIK-----------TKDLRINSIVKIKKAGDVIPEVIEAIKDEDFYKLEKFK 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
              +CP C S + ++ N           C    +CS + L  L+HF SR+A NI  LG +
Sbjct: 400 PALYCPNCHSLLEKNENE------VDQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDR 452

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  F  +     I+  +DI+ L+  +     +I  I  FG  S  NL DSIN  +N S
Sbjct: 453 SLEILFNLK----IIQNISDIYKLEEYKD----QILAIDNFGLKSYLNLIDSINMSKNNS 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LE+ +F LGIRH+G++ A+ LA+ Y       Q I+N+++ + D+   LI++  +G+ +A
Sbjct: 505 LEKVLFGLGIRHIGSKTAKILARKY-------QNIDNLMSASYDE---LIQINSIGESLA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQ 667
            +I+++++   N+  ++  LK  + +       ++S+  I NK  V TGTL + +     
Sbjct: 555 LSIIDWFKIEDNLKLIDE-LKSFNINFNYLGAKINSDSIIANKSFVITGTLTRPREEFKT 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                 G V+ +I S++TD ++ G+N GSKLEKA++LGVKI++E+QF  LL+
Sbjct: 614 LIENNAGKVIGSI-SKQTDYLLAGNNVGSKLEKAKKLGVKIIDEQQFFDLLK 664


>gi|210630510|ref|ZP_03296493.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279]
 gi|210160444|gb|EEA91415.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279]
          Length = 756

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 242/730 (33%), Positives = 365/730 (50%), Gaps = 73/730 (10%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L   + YH   YY    P I D+ +D L      I  A P+L     P+    ++GG ++
Sbjct: 54  LRHLLDYHAYRYYALDAPEISDAAFDKLLIELQQIEAAHPELVT---PDSYTQRVGGYVS 110

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                VTH     S++   N+E+L +++ R            + +T E KIDG  + I Y
Sbjct: 111 EQFTPVTHMARMYSMDDAMNLEELDEWLARTEDALGA---GRVAYTCELKIDGLGVAITY 167

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--------LNIPEIIEVRGEVYISK 195
           + G FV AA RGDG +GEDVS  +R I  +P  LS         +    IEVRGEVY+ K
Sbjct: 168 QNGAFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEAALAHMGADRSAPIEVRGEVYMPK 227

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E  A GR+P+ANPRNAA+G LR+ +P    +R+L  F++ +  T+ +    Q
Sbjct: 228 GSFARLNAEADAEGREPFANPRNAAAGSLRQKDPKVTASRHLATFIYAIADTAPLHVDSQ 287

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +  L  +R  GF VN  V +  +   + ++  +  + R  L YDIDG+V KVD F  Q  
Sbjct: 288 HAFLDWLRRAGFSVNGSVARCTSPAEVHAFCADALAHRGDLDYDIDGVVVKVDSFDQQGD 347

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I+ KF  ++ +T L DI IQ+GRTG+LTPVA  +PV + G+ I  ATLH
Sbjct: 348 LGFTARAPRWAIAFKFPPEEKTTVLRDIRIQVGRTGVLTPVAEFDPVTVAGSTIARATLH 407

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+            +D+R GD ++V +AG+VIP+VV  ++++R      +  P+ C
Sbjct: 408 NLDEIR-----------RKDVRPGDTIIVHKAGDVIPEVVGPVLDKRPEGTAEWDMPATC 456

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S VV +     G++  A+RC   L C AQ  ERL H+VSR   +++G+G + +D  
Sbjct: 457 PACGSPVVHE----DGEV--AYRCV-SLDCPAQLKERLLHWVSRGCMDVDGVGDELIDKM 509

Query: 495 FKS---EDPAFSIRIPADIF-------TLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
            ++    D A    +  D         T  +  +       + +  G      + D + +
Sbjct: 510 IEAGLLHDVADFYHLTVDAVAALDTGRTYLKDDKKKGVSAGDSIKVGATIAQKVVDELTR 569

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R   L R +F+LGIRHVG  +A  +A+ +L+    A      IA              +
Sbjct: 570 SREQPLSRVLFALGIRHVGKSVAEVIAQRFLTVDALAAASEEDIAGCEG----------I 619

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSI----------GRHEKNVSSEIENKK--- 651
           G  IA ++ +F   P N+  ++  L+E   S+             E  V++++   +   
Sbjct: 620 GPKIAASVRQFLAVPENLEVLQ-RLREAGLSLEEDLGAAHAQAAQETGVAADLAEAQPLA 678

Query: 652 ---LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
               V TGTL    R +A   +  LGA VS  +S+KT  ++ G   GSKL KA+ LGV +
Sbjct: 679 GLTFVLTGTLVNRTRDEAGAALKLLGAKVSGSVSKKTSYLVAGPKAGSKLTKAESLGVPV 738

Query: 709 MNE---EQFL 715
           ++E   EQ L
Sbjct: 739 LDEAALEQIL 748


>gi|189499438|ref|YP_001958908.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1]
 gi|254781285|sp|B3EM49|DNLJ_CHLPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189494879|gb|ACE03427.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1]
          Length = 684

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 232/726 (31%), Positives = 370/726 (50%), Gaps = 64/726 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA  E+  L +EI  H+  YY  ++P I D +YDA+  +  A+   FP+L  S+ P+  
Sbjct: 4   KQAVAEIIRLREEIDRHNYRYYVLARPEISDFQYDAMLEKLVALEGEFPELKTSDSPS-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +      V H  P LSL   ++IE++ +F  R+ +   ++  +S  F  E K 
Sbjct: 62  -QRVGGGITKEFPTVEHREPMLSLSNTYSIEEVGEFYHRVVKLLPEEHRDSPEFVAELKF 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE----------- 183
           DG  +++ Y  G  V  A RGDG  G+D++  IR I ++P  L L  P            
Sbjct: 121 DGVAVSLLYRDGLLVRGATRGDGSQGDDITGNIRTIRSVP--LRLGNPSGSGEGVERYEG 178

Query: 184 -IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG 242
             IEVRGEV+++K DF  LN+      R  +ANPRNA +G L+  +  +++R    FV  
Sbjct: 179 REIEVRGEVFMTKTDFAVLNEGRPEEER--FANPRNATAGTLKLQDSGEVSRRKMVFVAY 236

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST-LPYDIDG 301
             K S        E L+ +  LGF      R   T   I  Y +  +  R T LPY+IDG
Sbjct: 237 YLKESSAEIISHAERLELLERLGFYTGGEHRVCRTLKDIREYIDGWQKKRLTGLPYEIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K++  +L+ +LG  ++SPRW I++KF  ++A T +  I  Q+GR G +TPVA LEPV
Sbjct: 297 IVLKLNNTALRDELGATSKSPRWAIAYKFPAERARTVIRSIVFQVGRLGTITPVAELEPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  ++ +TLHN + ++ L           D+R+ D V+++++GE+IPKV+ ++  +R
Sbjct: 357 RLAGTTVSRSTLHNLEEVERL-----------DVRLHDTVVIEKSGEIIPKVISVVEEKR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P   P   P  CP C + +V+  N         + C     C AQ   R++HF SR+A 
Sbjct: 406 RPGTLPVVVPESCPSCGTPLVKPPNE------VHYYCPNSEGCPAQTKARIEHFASRNAM 459

Query: 482 NIEGLGKQQLDFFFKSE---DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +I GLGK  ++    S    D     R+  D+     RQ              + S  NL
Sbjct: 460 DINGLGKAIVEQLVSSGMVVDAGDLYRLTPDLIMRLDRQ-------------AEKSAGNL 506

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            ++I K RN    R +F+LGIRHVG   AR LA  Y +     +     ++   D     
Sbjct: 507 VNAIAKSRNREYFRVLFALGIRHVGIATARELAGAYPTLDMLCKASVEALSDVTD----- 561

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGT 657
                VG +IA+++  F++ P     +E L +  V     + +K V+   +  K++FTG 
Sbjct: 562 -----VGPVIAESVHAFFRKPSATAMIEKLREAGVRLEAEKTKKPVNLNFDGMKVIFTGA 616

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L++  R +A   V + G    A +S+ T++++ G  PGSKLEKA++LGV+++ E +F  +
Sbjct: 617 LERYTRDEAAGLVRERGGKTVASVSKNTNLVVYGKEPGSKLEKARKLGVRVITESEFEEM 676

Query: 718 LQQYNT 723
           L +  +
Sbjct: 677 LGEVGS 682


>gi|300779557|ref|ZP_07089415.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910]
 gi|300505067|gb|EFK36207.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910]
          Length = 667

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 220/711 (30%), Positives = 369/711 (51%), Gaps = 51/711 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  ++++  L +E+  H++ YYQ   P I D E+D L +    +   +P+     D N P
Sbjct: 3   ENIQQKIEQLRKELHQHNENYYQLDTPTITDFEFDMLLQELQDLEARYPEFY---DENSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +      + H     SL+  ++ +DL  +  RI     K  D+ + F  E K 
Sbjct: 60  TVRVGGGVTKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRII----KTIDDPVEFVAELKY 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I+I YE GK   A  RGDG  G++++  +R I  IP  L  + P    +RGE+Y++
Sbjct: 116 DGASISILYENGKLSQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPAQFFMRGEIYLT 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
           + +F  +N      G  P+ NPRN ASG L+  +  ++  R L+  ++    + E+ A+ 
Sbjct: 176 RKNFDKINKLREEEGLDPFMNPRNTASGSLKMQDSAEVRKRGLSSVLYQF-ISDEVPAES 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E+LQK +  GF  +   +   T   +  +     + R  LP++IDG+V KV+    Q+
Sbjct: 235 HWELLQKAQSWGFKTSQQAKLCKTMAEVQEFITFWDTERHNLPFEIDGIVLKVNSLQQQR 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  A+SPRW +++KF  ++  T L  +  Q+GRTG +TPVA L+PV + G ++  A+L
Sbjct: 295 QLGYTAKSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED IK L           D+   D V V++ GE+IPK+V +   +R  +++   +   
Sbjct: 355 HNEDIIKKL-----------DLHEHDFVYVEKGGEIIPKIVGVNTGKRTEESKEIEYIKH 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +V+  +       A H C   L C  Q + R+ H+VSR A NI+ LG + ++ 
Sbjct: 404 CPECGTELVKIEDQ------AIHFCPNELHCPPQVVGRMIHYVSRKALNIDNLGSETIEQ 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            ++       I  PAD + L + Q     ++       + S  N+   I K + +  E+ 
Sbjct: 458 LYRER----LIENPADFYVLTKEQLLPLERM------AEKSAQNIITGIEKSKEVPFEKV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ +GI+HVG  +A+ L K + +     +E+ N           L +V  +G  IA +IV
Sbjct: 508 LYGIGIKHVGETVAKKLVKNFPT----IEELKNATIE------ELCQVEDIGTKIAVSIV 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +F+QNP N+  +E  LK     + + E     +S+ +E K  +FTG L    R  A+E V
Sbjct: 558 DFFQNPENVLMIER-LKSYGVQLEKGESTNEVLSNVLEGKTFLFTGKLSLFTRESAEEMV 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
            + G    + +S+  + +IVG+  GSKL+KAQ +G + I++E+QFL L+++
Sbjct: 617 EKHGGKNISAVSKNLNYLIVGEKAGSKLKKAQDIGTITILDEQQFLDLIEK 667


>gi|89891625|ref|ZP_01203129.1| DNA ligase [Flavobacteria bacterium BBFL7]
 gi|89516172|gb|EAS18835.1| DNA  ligase [Flavobacteria bacterium BBFL7]
          Length = 684

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 233/718 (32%), Positives = 375/718 (52%), Gaps = 54/718 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++ SL  E+  H+  YY    P I D E+D    +   +  A P+     D   P  +
Sbjct: 4   KEQIQSLRDELREHNYNYYVNDNPTISDFEFDKKLEQLKTLEAAHPEFY---DATSPSVR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+  +   + H     SL+  ++IEDLR +  RI    +K  D  I +T E K DG 
Sbjct: 61  VGGEVTKNFNTIKHINRMYSLDNSYSIEDLRDWEKRI----KKIVDGEIQYTCELKYDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GKFV A  RGDG+ G++V+A +R I ++P  L   ++P   E+RGE+ +  +
Sbjct: 117 SISLHYENGKFVQAVTRGDGNQGDEVTANVRTIKSVPLQLKGDDVPAKFEIRGEIVLPWD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  +N+E    G   Y NPRN ASG L+  +  ++  R L+  ++ L   + +  K Q+
Sbjct: 177 GFHKMNEERADQGLDLYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQLAGEN-LPVKSQF 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L   R  GF      +  ++   +  + N     R  LPY+ DG+V KV+    Q +L
Sbjct: 236 DSLTLARKWGFKAPQESKLVHSIEEVFEFINHWDVARKELPYETDGVVIKVNSLDQQDEL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++P+W +++KFA +Q STRL +I  Q+GRTG +TPVA LEPV I G  +  A+LHN
Sbjct: 296 GFTAKAPKWAMAYKFAAEQVSTRLEEITYQVGRTGSITPVANLEPVEISGTTVRRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           DIRVGD V V++ GE+IPK+V + + +R  ++ P  + + CP
Sbjct: 356 ADQIEKL-----------DIRVGDEVYVEKGGEIIPKIVAVELTKRPDNSTPTVYATHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR          A H C   +AC  Q   R++HF+SR A +I+G+G + +    
Sbjct: 405 ECHTELVRTEGD------AKHYCPNDMACPPQVKGRIEHFISRKAMDIDGIGAETVGQLV 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
              D  F I   AD++ L   Q     ++         S  N+ + I   + +  ER +F
Sbjct: 459 ---DAGF-INNYADLYDLTVEQVLPLERM------AQKSAENMINGIEASKQVPFERVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQ---NFAQEIN--------NIIAHNNDDWLSLIRVPLV 604
            LGIR+VG  +A+ LAK+Y +     N   E +        ++ +  +     L  VP +
Sbjct: 509 GLGIRYVGETVAKKLAKHYKNVDALLNMPAEPDKSSIDLFADVSSAADKKMEELTAVPEI 568

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKI 661
           G+ IAQ++VEF QN   +  +E  LK         E+ +   + ++  K  V +G  + +
Sbjct: 569 GESIAQSLVEFIQNEDQMAIIER-LKNTGLQFALSEEQLEGQTDKLAGKSFVISGVFE-M 626

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            R+  ++ V   G   S+ +S KTD +I GD  G SKLEKA++LG+ +++E++FL ++
Sbjct: 627 SRNDLKKLVEDNGGKNSSSISSKTDYLIRGDKMGPSKLEKAEKLGITMISEQEFLAMI 684


>gi|258645494|ref|ZP_05732963.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470]
 gi|260402847|gb|EEW96394.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470]
          Length = 669

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 223/704 (31%), Positives = 371/704 (52%), Gaps = 58/704 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K+   L +++ YH   YY   KP I D E+D L R    +   +P++     P+ P  ++
Sbjct: 8   KKAEELRKKLRYHSYLYYVLDKPEITDFEFDRLYRSLVDLEKEYPEIVT---PDSPTQRV 64

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG+ +    K+    P LSL   ++ E+LR F  R++          + +  E KIDG  
Sbjct: 65  GGKASDDFRKIPFKKPMLSLANAFSAEELRDFDRRVHGGIGAM---PVEYITELKIDGLS 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G  +    RGDG  GEDV++ ++ I TIP  +  N P  +EVRGEVY+ +  F
Sbjct: 122 MNLIYENGSLMQGLTRGDGKVGEDVTSNVKTIKTIPLYIE-NAPAYMEVRGEVYMPRKSF 180

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           +ALN+E    G  P+AN RNAA+G LR+L+P     R L+FF + LG    +    Q ++
Sbjct: 181 IALNEERDEAGMMPFANCRNAAAGSLRQLDPKVTAARNLDFFAYALGAEEGLDISSQDDL 240

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L +++   F VN   R+ ++  G+++   E +  R  L YD DG+V KV++F  Q+ LG 
Sbjct: 241 LLQLKKFHFRVNPHYRKWDSIEGVITGVREWEKKRRELDYDTDGMVIKVNDFRQQELLGA 300

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + P+W I++K+  ++A T++  I + +GRTG+LTP A L PV + G  +  ATLHN D
Sbjct: 301 TGKDPKWAIAYKYPPEEAVTKIEKIVVSMGRTGVLTPSADLTPVRLAGTTVKRATLHNLD 360

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           +I+            +DIR GD V++ +AGE+IP++  ++  +R+   + F  P  CP+C
Sbjct: 361 FIR-----------EKDIREGDTVIIYKAGEIIPEIAAVLKEKRNGSEKEFEMPENCPVC 409

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            +  +R ++ +     AA RC    AC     E+L HF SRDA +IEGLG   +D     
Sbjct: 410 GNS-IRRIDTE-----AAFRCINP-ACGGVVREKLIHFASRDAMDIEGLGPAVVDSL--- 459

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                + R+ AD       ++    +IE +   G+ S  NL  +I   +   L + +F L
Sbjct: 460 ----LAYRLVADAADFYALKEDDLRQIERM---GEKSAANLITAIRASKERGLAKLLFGL 512

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR +G E    LA +Y         I+ I+A    D  ++     +G I A+++ +++ 
Sbjct: 513 GIRFLG-EKGSELAAHYF------HTIDAIMAA---DVETIEETEGIGKITAKSLYDYFH 562

Query: 618 NPRNICAVE------ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + +NI  +        L++E+       E++ S     + +V TG L  + R +A E + 
Sbjct: 563 DEKNIEMINKLKNAGVLMEEI------KEESESGMFSGESVVLTGKLAVMGRREASELIK 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +LG    + ++  T +++ G++ GSKLEKA+  G+ +++E++FL
Sbjct: 617 RLGGTTQSSVTNITTLVVAGEDAGSKLEKARAKGIPVIDEQEFL 660


>gi|300781381|ref|ZP_07091235.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC
           33030]
 gi|300533088|gb|EFK54149.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC
           33030]
          Length = 674

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 230/713 (32%), Positives = 371/713 (52%), Gaps = 49/713 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           EA   E   ++ + L +E+  H D YY    P+I D+E+D + RR   +    P+LA   
Sbjct: 3   EAQVSEDLLRQWNELAKEVRRHRDLYYN-GDPVITDAEFDEMFRRLQQLEEDHPELAV-- 59

Query: 70  DPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P  ++G     + F+ V H  P +SL+ +++ E+L  ++T+              +
Sbjct: 60  -PDSPTKEVGAAPTSTAFEDVEHLEPMMSLDNVFSAEELSDWLTK----------TPGPY 108

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E KIDG  I + YE G+   AA RGDG  GE+++A  R I  IP  L+ + P ++EVR
Sbjct: 109 LTELKIDGVSIDLVYENGQLTRAATRGDGRVGENITANARVIDDIPHELTGDFPALLEVR 168

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GEV+I   DF  LN+     G KP+ANPRN A+G LR+ +P  +  R L    HG+G   
Sbjct: 169 GEVFIRPEDFPELNELRQKEGGKPFANPRNTAAGGLRQKDPEKVRNRKLRMICHGIGARE 228

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +    Q++  +K+   G PV+   ++A T   +          R    +++DGLV KVD
Sbjct: 229 GVEFSSQHDAYEKLAAWGLPVSEYTKRAETAEEVQKTVEYWADHRHDAIHEMDGLVIKVD 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+QLG  +R+PRW I++K+  ++ +T+L DI + +GRTG  TP A LEPV + G+ 
Sbjct: 289 DLAAQRQLGFTSRAPRWAIAYKYPPEEVTTKLKDIAVSVGRTGRATPFAVLEPVFVSGST 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN+  +K         R G  + +GD V+V++AGE+IP+V+  + + R    + 
Sbjct: 349 VSMATLHNQHEVK---------RKG--VLIGDTVVVRKAGEIIPEVLGPVADLRDGTEKE 397

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C +++      K G   A  RC    +C AQ  +RL++  SR AF+IE LG
Sbjct: 398 FVFPENCPVCGTKLA---PAKEGD--ADWRCPNTRSCPAQLGQRLEYLASRGAFDIEALG 452

Query: 488 KQQLDFFFKSEDPAFSIRI-PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           ++       S      + I   D+FTL       ++      G  + S   L  ++ + +
Sbjct: 453 EKGAQDLIAS-----GVLIDEGDLFTLTESDLEKSSVYTTKAGTVNASGKKLLANLEQAK 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L R + +L IRHVG   AR+LA  Y S       +  ++  + DD   L     VG 
Sbjct: 508 EKELWRVLVALSIRHVGPTAARALASRYGS-------MGKLLDASVDD---LADTDGVGG 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           IIA++  E+++   +   V         ++     ++   +E   +V TG+L+   R  A
Sbjct: 558 IIAESFKEWFEVEWHRDIVRK-WGAAGVNMEDEASDLEQTLEGLTVVVTGSLENFSRDGA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   G   +  +S+KTD ++VG+N GSK  KA+ LG+ I++E+QF  LL+
Sbjct: 617 KEAILSRGGKAAGSVSKKTDYVVVGENAGSKETKARDLGITILDEDQFRTLLE 669


>gi|39938924|ref|NP_950690.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M]
 gi|81402396|sp|Q6YQD6|DNLJ_ONYPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|39722033|dbj|BAD04523.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M]
          Length = 671

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 224/700 (32%), Positives = 376/700 (53%), Gaps = 50/700 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++ SL ++++  +  YY  S P + D +YDAL +    +   +P       P  P  K
Sbjct: 8   KQKIKSLVKQLTKANYQYYNLSNPDLSDQQYDALLKELINLETRYPQFKL---PYSPTLK 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IGG +      + H  P +SL  ++N+E+++ F  RI      K   +     E KIDG 
Sbjct: 65  IGGFVEKKFSTIKHKTPMMSLGNVFNLEEIKAFYDRIV-----KKIPTFSLLTELKIDGV 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I+++Y+KG  V A  RG+G  GED++   + I TIP  L  ++   +EVRGE+Y+S   
Sbjct: 120 AISLKYQKGILVQALTRGNGIWGEDITKNAQTIKTIPLRLKEDLD--LEVRGEIYLSHPA 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN +     +  ++NPRNAASG LR+LN   +  R L+ FV+G+     +    Q E
Sbjct: 178 FEKLNAQRKQENKPLFSNPRNAASGTLRQLNSAIVAQRNLSIFVYGISD-PYLTKPTQKE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LGF  N      + F  ++S   + K+I+  L YD DG+V K++E +    +G
Sbjct: 237 TLVFLTALGFTTNPHYYCVSNFENLLSVIEKYKTIKEQLTYDTDGIVIKINELAFHSLIG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++PRW  ++KFA   + + + +I  Q+GRTG++TPV ++ PV + G+L++   LHN 
Sbjct: 297 ATAKAPRWATAYKFATITSQSIVQNIIFQVGRTGVITPVCKIMPVMVDGSLVSKVVLHNY 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+ D V+V +AG VIP+++++I ++R    +P      CP 
Sbjct: 357 DYI-----------CKKDIRIKDHVIVHKAGSVIPEILEVIKSKRTDLQKPTLMIEKCPA 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQ+     L  + G++   + C     C  Q++++L HFVS++A +I  LG+Q +  FF 
Sbjct: 406 CQTI----LEKQPGEV--DYFCLNP-NCREQKIQKLIHFVSKNAMDINVLGEQTIIAFFD 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I  P+D++ L++ +      ++ + GFG   +TN+ D+I   +    E  +F+
Sbjct: 459 KN----LIAKPSDLYLLKKHKHI----LQEMPGFGAKKITNILDAIEASKQKGFEDVLFA 510

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI+H+G ++++ LAK++ + +N  Q    +I    +          +G  IAQ+I +++
Sbjct: 511 LGIKHIGKKVSQVLAKHFQTIENLQQATPELITQIRE----------IGIKIAQSIQQYF 560

Query: 617 QNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            N  N+  V  L  L     S         +   NKK+V TGTLQK  R + Q+ + Q+G
Sbjct: 561 SNSCNLEEVSKLKTLGVSFQSTNPQNPTTQTIFTNKKIVLTGTLQKYSRLQIQQILEQMG 620

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           A+++  LS + + +IVG N GSKL KAQ+L + I+ E++ 
Sbjct: 621 AIITNSLSLQNNYLIVGINAGSKLTKAQKLQIPIIEEKEL 660


>gi|197294788|ref|YP_001799329.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense]
 gi|254781387|sp|B1VAY1|DNLJ_PHYAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171854115|emb|CAM12104.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense]
          Length = 670

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 229/700 (32%), Positives = 389/700 (55%), Gaps = 60/700 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE+  K+L++   E +Y    YY  S P + D +YDAL +    +   FP       P  
Sbjct: 7   IEKKIKDLTNQLNEANYE---YYVKSNPKLTDQQYDALLKELLVLEKKFPQFTL---PYS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  KIGG +      V H+   +SL   +N+++L+ F  RI + +     +S     E K
Sbjct: 61  PTLKIGGFVEKKFSTVKHTSAMMSLANAFNLKELKAFYDRIAKKF-----SSFSMVSELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y+KG    A  RG+G  GE+++  ++ I  +P  L L  P  +EVRGE+Y+
Sbjct: 116 IDGVAVSLKYKKGILFQALTRGNGVWGEEITKNVQTIKQVP--LKLTQPLDLEVRGEIYL 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
           S + F  LN +     +  ++NPRNAASG +R+LN + +  R L+ F++ + +   +   
Sbjct: 174 SNSSFQKLNQQRKIAQQPLFSNPRNAASGTIRQLNSSIVAQRNLSIFIYSI-QNPYLLKS 232

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L  +  LGF VN   + +++F  +     E++ ++  L Y+ DG+V K++E +L 
Sbjct: 233 TQEETLTFLASLGFSVNPYYKCSSSFEELEIKIQELEKLQQNLDYNTDGVVVKINELNLH 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             +G+  +SP+W I++KFA K + + + +I  Q+GR+G+LTPV ++ PV + G+L++   
Sbjct: 293 DSIGKTTKSPKWAIAYKFATKNSESVVQEIIFQVGRSGMLTPVCKIIPVMVDGSLVSKVV 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYI             +DIR+ D V V +AG VIP++ ++I ++R  D++PF+  +
Sbjct: 353 LHNYDYI-----------CKKDIRLKDYVQVHKAGSVIPEIKEVIKSKRPSDSKPFAMIT 401

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S     LN   G++   + C     C  Q++++L HFVS++A +I+ LG Q L 
Sbjct: 402 QCPSCHSL----LNKNKGEV--DYFCINK-NCLEQKIQKLIHFVSKNAMDIDTLGNQTLI 454

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF  +     I  P+DI+ L+         ++ I GFG   V N+  S+ K +N SLE 
Sbjct: 455 TFFNQK----LIENPSDIYLLKNNLDV----LQKINGFGAKKVQNILTSVEKSKNKSLEN 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR-VPLVGDIIAQA 611
            +F LGI+HVG ++++ L K++ S +        I+     + L  I+ +P +G+ IA +
Sbjct: 507 VLFGLGIKHVGLKVSQVLTKHFDSIE--------ILQKTTLENLESIKSIPEIGEKIALS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------NKKLVFTGTLQKIQRHK 665
           + +++QNP ++  +   LK++  S    +   +S+I+      NKK+V TG+LQ   R +
Sbjct: 559 LQKYFQNPLHLEEITK-LKQLGVSF---KSTTTSQIKAPNFFTNKKVVLTGSLQNYTRSQ 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            ++ + Q GA+++  LS +T ++I G NPGSKL+KA+ L 
Sbjct: 615 IKKLLIQKGAIINDALSSQTHLLITGANPGSKLQKAKTLN 654


>gi|261380488|ref|ZP_05985061.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
 gi|284796739|gb|EFC52086.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
          Length = 822

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 261/812 (32%), Positives = 403/812 (49%), Gaps = 160/812 (19%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L     P+ P  ++GGE      +V H +P
Sbjct: 22  YYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQRVGGEPLAGFDEVRHEVP 78

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F ++     +     + +EPK DG  I++ Y  G  
Sbjct: 79  MLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLNGEKPEYVIEPKFDGLAISLLYRDGVL 138

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
             AA RGDG +GEDV+  ++ +  IP R+   NIPE+IE+RGEV + K DF ALN     
Sbjct: 139 TQAATRGDGTTGEDVTQNVKTVSNIPLRLYGENIPELIEIRGEVLMLKADFAALNARQAE 198

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 199 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGFIAEEHLQELGYCKEL 257

Query: 265 GFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           GF + +G        + ++++Y +M+  R TLPY+IDG+V KV+  + Q++LG  +R+PR
Sbjct: 258 GFSLPDGNFGCFPNINEVLAFYEQMQQKRPTLPYEIDGMVVKVNSLAQQRELGFISRAPR 317

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D      
Sbjct: 318 WAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD------ 371

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------------- 421
              +V R  +D+RVGD V+V+RAG+VIP+VV +I   R                      
Sbjct: 372 ---EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQESNISVSDGLQDDLFAETP 426

Query: 422 -----HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
                 P  +P+  P+ CPIC S + R+     G+ VA  RC+GG+ C AQ+ + L HF 
Sbjct: 427 SETRAEPLHKPYRLPTHCPICHSEIERE----EGEAVA--RCSGGMLCQAQRAQGLIHFA 480

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPA--FSIRIPADIFTLQRRQQT-----------STTK 523
           SR A +I+GLG++Q++    ++D    F+     DI TLQ+ ++T           S ++
Sbjct: 481 SRKAMDIDGLGQKQIEQLV-TQDLVRHFADLYRLDIPTLQKMKETADKASVNEEEPSNSE 539

Query: 524 IE---NILGFGDVSVT----------NLYDSINKRRNISLERFIFSLGI----------- 559
           IE   N  G   +S T          N+   I   +   L RF+F+LGI           
Sbjct: 540 IEDFENESGNALLSKTSKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTL 599

Query: 560 ----------RH-----------VGAEIARSLAKYY----------------LSYQNFAQ 582
                     RH           +G  +A S+A ++                ++ Q+ A 
Sbjct: 600 AQAFGTLGNVRHAPEPILACLPDIGTVVAHSIAHFFAQEAQQAMIDELLAVGVALQSQAV 659

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE---------------------FYQNPRN 621
            I  +       W++ +    + +  A A+ E                     +   P+N
Sbjct: 660 TIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSIEGLQSDKALPADWQTWRSKPQN 719

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +E +    + ++ + +    S+     I  K  V TGTL  ++R +AQ  +   G  
Sbjct: 720 AALLENMKTFFAQTLSKLQDETISDGINETIAGKTFVLTGTLPTLKRDQAQAMIEAAGGK 779

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           VS  +S+KTD ++ G+  GSKLEKAQ LGV +
Sbjct: 780 VSGSVSKKTDYVVAGEAAGSKLEKAQTLGVAV 811


>gi|312140511|ref|YP_004007847.1| DNA ligase (nad+) liga [Rhodococcus equi 103S]
 gi|311889850|emb|CBH49167.1| DNA ligase (NAD+) LigA [Rhodococcus equi 103S]
          Length = 712

 Score =  366 bits (940), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 239/732 (32%), Positives = 369/732 (50%), Gaps = 57/732 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +++P  A    + R+    L + +  H   YY    PI+ D E+D L    +A+    PD
Sbjct: 17  EVVPASA----EDRERWQELAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALEERHPD 72

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L     P+ P   +GG        V H    LSL+ +++ ++LR +I RI    +  D  
Sbjct: 73  L---RTPDSPTQLVGGGFATEFKAVDHLERMLSLDNVFDYDELRTWIGRIEA--EVSDGR 127

Query: 125 S---------IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
           S         + +  E KIDG  + + YE G+ V AA RGDG +GEDV+   R I  IP 
Sbjct: 128 SAGSAAAHPDLHYLCEVKIDGVALNLVYENGRLVRAATRGDGRTGEDVTLNARTISDIPE 187

Query: 176 VLSLN----IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT- 230
            L+ +    IP ++EVRGEV+    DF ALN  ++A G+ P+ANPRN+A+G LR+ NP  
Sbjct: 188 TLTPSDEYPIPALLEVRGEVFFRLEDFAALNASLVADGKAPFANPRNSAAGSLRQKNPAV 247

Query: 231 DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
              R L    HGLG+T      GQY+    +   G PV+    +      +V        
Sbjct: 248 TARRRLGMICHGLGRTEGFDPAGQYDAYTALAAWGLPVSTHTSRVVGADAVVEKVKYWDE 307

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  + ++IDGLV KVDE SL ++LG  +R+PRW +++K+  ++A+T+L+DI + +GRTG
Sbjct: 308 HRHDVEHEIDGLVVKVDEMSLHRRLGATSRAPRWAVAYKYPPEEATTKLVDIRVSVGRTG 367

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TP A +EPV + G+ +  ATLHN   +K         R G  + +GD V++++AGEVI
Sbjct: 368 RVTPFAYMEPVLVAGSTVALATLHNASEVK---------RKG--VLIGDTVVIRKAGEVI 416

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+V+  +V+ R    + F  P+ CP C + +      K G   A  RC    +C AQ  E
Sbjct: 417 PEVLGPVVDVRDGSEREFVMPTECPECGTTLA---PAKEGD--ADIRCPNQRSCPAQLRE 471

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
           R+ H   R AF+IE LG +      +    A  I    D+F+L               G 
Sbjct: 472 RVFHVAGRGAFDIEVLGYEAATALLQ----AGVISDEGDLFSLTEDDLLEAPLFRTKAGK 527

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              +   L D++   +   L R + +L IRHVG   AR+LA  + S +            
Sbjct: 528 LSANGRRLLDNLGSAKQQPLWRVLVALSIRHVGPTAARALASEFGSLERI---------- 577

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIE 648
            N     L  V  VG  IA A+V +++    R+I A +     V+    R E +++  +E
Sbjct: 578 ENAGVEELAAVDGVGGTIAAAVVAWFEVDWHRDIVA-KWRAAGVTMEDERDE-SIARNLE 635

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
              +V TG+L+   R +A+E +   G   +  +S+KT  +++G+ PGSK  KA++LGV I
Sbjct: 636 GLSIVVTGSLEGFSRDEAKEAILVRGGKAAGSVSKKTAFVVIGEAPGSKAAKAEELGVPI 695

Query: 709 MNEEQFLFLLQQ 720
           ++E+ F  LL+ 
Sbjct: 696 LDEDGFRRLLEH 707


>gi|288927843|ref|ZP_06421690.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330677|gb|EFC69261.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 665

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 232/716 (32%), Positives = 379/716 (52%), Gaps = 70/716 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L +++ +H+  YY  + P + D E+D L R    +    P++    DPN P  ++
Sbjct: 5   KRIEELREQLHHHNYLYYVQNSPTLSDQEFDRLMRELQDLEAKHPEVY---DPNSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPKIDG 136
           G +++    +V H    LSL   +N +++  +   +      KD     F +  E K DG
Sbjct: 62  GSDLSTGFTQVKHKYAMLSLANTYNEQEVASWYATV-----SKDLGGQPFEVCCELKYDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             I++ YE+G+ V A  RGDG  G+DV+A +R I  IP VL     P   E+RGE+ +  
Sbjct: 117 LSISLTYEQGRLVRAVTRGDGEQGDDVTANVRTIRAIPLVLPGTGYPNEFEIRGEILMPW 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN ++   G    ANPRNAA G L+  +P  +  R L+ +++ L    ++ + G 
Sbjct: 177 KVFEQLNVKLEKAGETLLANPRNAAVGALKSHDPRLVAKRKLDAYLYYL-LGDDLPSDGH 235

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE L+     GF V+ G+ +A +   I  + N   + R  LP   DG+V KV+    Q+Q
Sbjct: 236 YENLKAAETWGFKVSQGMHKATSLEQIYEFINHWDTARHDLPVATDGIVLKVNSLRQQQQ 295

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++  TRL ++  Q+GRTG +TPVA +EPV + G  +  ATL+
Sbjct: 296 LGFTAKSPRWAIAYKFKAERVCTRLNEVTFQVGRTGAVTPVANMEPVLLAGTTVKRATLN 355

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED+I+ L           D+ +GD V V++ GE+IPK+V + V+ R P+ QP  F S C
Sbjct: 356 NEDFIRSL-----------DLHIGDNVFVEKGGEIIPKIVGVDVSHRSPNLQPVHFISNC 404

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S +VR      G+  AA+ C     C  Q   R++HF++R A NI+ +G + +D +
Sbjct: 405 PECGSPLVR----YAGE--AAYYCPNDTGCPPQIKGRIEHFIARKAMNIDSIGPETVDDY 458

Query: 495 FKSEDPAFSIRIPADIFTLQRRQ-------QTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           F+       +R  AD++ ++  Q       Q S  KI          V  + DS+    +
Sbjct: 459 FRRG----IVRNVADLYEIRTEQINGDGTRQKSAQKI----------VKGIQDSV----S 500

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              ER +F+LGIR VG   A+ LAK++ S       I+ ++    +    L+ V  VG +
Sbjct: 501 TPFERVLFALGIRFVGETTAKLLAKHFKS-------IDALMVATPE---QLVEVEGVGTV 550

Query: 608 IAQAIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           IA+++V F+ +  N+  +E L +   ++S S+ + +   S ++  K +V +G  ++  R 
Sbjct: 551 IAESVVRFFHDEVNLNIIERLRQYGLQMSQSVDQQQP-ASEKLAGKNIVISGVFEQHSRD 609

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +E + + G    + +S KT  I+ G N G SK++KAQQLG+ +++E  FL +L+
Sbjct: 610 EYKEMIERNGGKNVSSISSKTSFILAGANMGPSKMQKAQQLGIDMIDESAFLKMLE 665


>gi|320105506|ref|YP_004181096.1| NAD-dependent DNA ligase [Terriglobus saanensis SP1PR4]
 gi|319924027|gb|ADV81102.1| DNA ligase, NAD-dependent [Terriglobus saanensis SP1PR4]
          Length = 694

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 241/727 (33%), Positives = 377/727 (51%), Gaps = 70/727 (9%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           S L  EI +H+  YY   KP I D++YDAL     A+    P+L     P  P  ++GG+
Sbjct: 8   SELRAEIEHHEHAYYVLDKPEISDAQYDALVNLLKALETEHPELV---TPESPTQRVGGK 64

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
                 KV HS P LSL+  +N  +LR +  R+       D  ++ +T E K+DG  + +
Sbjct: 65  PREGFAKVAHSRPMLSLDNAYNEAELRAWAERVTTSLPASD--AVEYTCEYKLDGLSLAL 122

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------RVLSLNIPEIIEVRGEVYISK 195
            YE G+ V    RGDG  GEDV++ +R I ++P      ++ +  +P   EVRGEV + +
Sbjct: 123 HYENGQLVRGVTRGDGSVGEDVTSNVRTIRSVPLRIAAAKLKAAGLPGTFEVRGEVVMPQ 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
           + F  LN +  A G+   ANPRNAA+G +R + P+ +  R L+F+ + L +  +   K Q
Sbjct: 183 SAFEELNRQREAAGQAAAANPRNAAAGTIRTIEPSIVAQRRLDFYAYFLLRDGDTLLKSQ 242

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
              L  +R  GF VN   R   T   ++ +  + ++ R  L Y+IDG+V KV+  +LQK+
Sbjct: 243 QATLDALRATGFRVNAQARTVGTIDEVLGFIAQAEAERDGLGYEIDGVVIKVNATALQKR 302

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++PRW I++KF  +   T+L  +  Q+GRTG LTPVA L+P+ IGG  +T ATLH
Sbjct: 303 LGFTGKAPRWAIAYKFPARAGVTQLRGVIFQVGRTGKLTPVADLQPIFIGGTTVTRATLH 362

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433
           N D I+ L            +++GD V V+R G+VIPK+  ++ ++ H    +   FP+ 
Sbjct: 363 NADEIERL-----------GLKIGDHVSVERGGDVIPKITHVVEDKIHARGTEEIVFPTV 411

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   VVR+      + V A       +C A+  E L+HF SR   NIEGLG+  +  
Sbjct: 412 CPRCGEPVVREEGEVDWRCVNA-------SCPARLEEELRHFASRGVMNIEGLGESLVAQ 464

Query: 494 FFK--------------------SEDPAFS--IRIPADIFTLQRRQQTSTTKIENILGFG 531
                                  +E P     +   ADI+ L   Q     +I      G
Sbjct: 465 LLGHTVAEAVDATAGVGEGEESVAEAPTREALVHSVADIYGLTLEQLMGLERI------G 518

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
             S  +L   I K ++  L R +  LGIRHVG   A++LA+ + S       ++ +I+  
Sbjct: 519 QKSAESLLAEIEKSKSAPLSRVLLGLGIRHVGERTAQTLAEEFGS-------MDALISAT 571

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
            +D   L RV  VG  +A+AI E++ N +N+  V+  LK+   ++   ++   +++    
Sbjct: 572 EED---LTRVNDVGPKVAEAIREWFANEKNLLLVQR-LKDAGLTMTAEKRERGTQLAGMT 627

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            V TGTL  + R  A+E +   G  VS  +S+KT  ++ G++ GSKLEKA++LG+ +++E
Sbjct: 628 FVLTGTLPTLTRDTAKEKIEAAGGKVSGSVSKKTTYVVAGEDAGSKLEKARELGIAVLDE 687

Query: 712 EQFLFLL 718
              L +L
Sbjct: 688 AGLLEML 694


>gi|299139723|ref|ZP_07032896.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8]
 gi|298598347|gb|EFI54512.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8]
          Length = 723

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 252/760 (33%), Positives = 387/760 (50%), Gaps = 92/760 (12%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P  ALS +Q   ++ +L +++ +H+  YY    P + D++YDA       +    P+L  
Sbjct: 5   PSNALSPDQ---QIEALREDLRHHEHLYYVLDAPELTDAQYDARMNELRRLETEHPELV- 60

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++GG+      KV HS P LSL+  +N  +LR +  R+       +   + 
Sbjct: 61  --TPDSPTQRVGGKPKEGFAKVAHSRPMLSLDNAYNEAELRAWAERVVSGLPSGE--VVR 116

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAAL-----RGDGHSGEDVSACIRAIPTIP------RV 176
           F  E K+DG  + ++Y+ G    A L     RG+G  GEDV+  +R I ++P      ++
Sbjct: 117 FVCELKLDGLSLALQYDAGAKHEAVLKTGVTRGNGTIGEDVTTNVRTIRSVPLHIQAAKL 176

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
               +P+  EVRGEV + +  F  +N E  A G  P ANPRNAA+G +R L P  +  R 
Sbjct: 177 AKAGLPQQFEVRGEVVLPQKAFEKMNAEREAAGLAPAANPRNAAAGTIRTLEPNIVAQRR 236

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L FF + L +  E     Q   LQ +R  GF VN   R   +   ++++ NE + +R  L
Sbjct: 237 LEFFAYFLLREGEPLLAEQSSALQALREAGFLVNKHARTVGSIDEVLAFINEAEPLRDGL 296

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           PY+IDG+V KVD  + Q++LG   ++PRW I++KF  + A TRL D+  Q+GRTG +TPV
Sbjct: 297 PYEIDGVVIKVDAIAQQRRLGFTGKAPRWAIAYKFPARAAVTRLDDVLFQVGRTGKVTPV 356

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A L PV IGG  +T ATLHN D I  L            +RVGD V V+R G+VIPK+ +
Sbjct: 357 AALAPVFIGGTTVTRATLHNADEIARL-----------GVRVGDFVSVERGGDVIPKITE 405

Query: 416 IIVNERHP-DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
           ++ + +HP       FPS CP+C S +VR      G++    RC   + C A+  E L H
Sbjct: 406 VVEDAKHPRGTSEIIFPSHCPVCGSELVR----AEGEV--DWRCINAV-CPARVREELLH 458

Query: 475 FVSRDAFNIEGLGKQQL-DFFFKSED------------PAFS------------------ 503
           + +R   NIEGLG+  +     ++E+            P  S                  
Sbjct: 459 WAARGVMNIEGLGESMVAQLLGQAEEDSESAEGRSGLQPGLSESVSDEGLQTGLAEPIKT 518

Query: 504 -----IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                IR  AD+++L R Q  +  ++      G+ +   L   I + +   L R +F LG
Sbjct: 519 SHEPLIRSIADLYSLTREQLLTLERV------GEKTADALLAEIERSKQAPLARVLFGLG 572

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IR VG   A  LA+++ S       +++++  + +D   L  V  VG  +AQAIVEF+  
Sbjct: 573 IRFVGERTASLLAEHFGS-------LDDLMKASAED---LEAVNEVGPRVAQAIVEFFAE 622

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            +N   VE  L+ V  +    ++ V +       V TGTL  + R +A++ +   G  VS
Sbjct: 623 EKNRELVEK-LRTVGLTFTAEKRVVGTTFAGLTFVLTGTLPTLTRDEAKQRIEDAGGKVS 681

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +S+KT  ++ G++ GSKLEKAQQLGV +++E   L L+
Sbjct: 682 GSVSKKTSYVVAGEDAGSKLEKAQQLGVAVLDEAGLLALI 721


>gi|331703733|ref|YP_004400420.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802288|emb|CBW54442.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 668

 Score =  366 bits (939), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 236/712 (33%), Positives = 396/712 (55%), Gaps = 52/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++A   ++ L+++++     YY    P + D EYD   +   ++   +P+L  S+ P
Sbjct: 1   MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITSDSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    K+GG ++    K+TH  P LSL  +++ ++   F T++ +     D+    +  E
Sbjct: 61  S---QKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQVSKVSNTLDNQ---YVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+  ++ I +IP  L +N  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINVKTIKSIP--LKINKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEI 249
           Y+SK +F  +N + +      + NPRNAA+G LR+L+   + +R L+ F  + +   S  
Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNN 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               QY+ + K+  LGF  N           I +Y ++  ++++ L Y IDG+V+K+++ 
Sbjct: 233 LT--QYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDK 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ  LG  ++ P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV + GA I+
Sbjct: 291 NLQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATIS 350

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E   + + F 
Sbjct: 351 AATLNNAEYIK-----------SKDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEKFK 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
              +CP C S + ++ N           C    +CS + L  L+HF SR+A NI  LG +
Sbjct: 400 PILYCPNCHSLLEKNENE------VDQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDR 452

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  F        I+  +DI+ L+  +     +IEN   FG  S  NL DSIN  +N S
Sbjct: 453 SLEILFNLN----IIKTISDIYRLEEYKD-QILEIEN---FGLKSYLNLIDSINMSKNNS 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LE+ +F LGIRH+G++ A+ LA+ Y       Q I+N++  + D+   LI++  +G+ +A
Sbjct: 505 LEKVLFGLGIRHIGSKTAKILARKY-------QNIDNLMKASYDE---LIQINSIGESLA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQ 667
            +I+++++   N+  +   LK  + +       ++S+  I NK  V TGTL + +     
Sbjct: 555 LSIIDWFRIEDNLKLINE-LKSFNINFNYLGAKINSDSIIANKSFVITGTLTRPREEFKT 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                 G V+ +I S++TD ++ G+N GSKLEKA++LGV I++E+QF  LL+
Sbjct: 614 LIENNAGKVIGSI-SKQTDYLLAGNNVGSKLEKAKKLGVTIIDEQQFFDLLK 664


>gi|254523079|ref|ZP_05135134.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14]
 gi|219720670|gb|EED39195.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14]
          Length = 821

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 196/497 (39%), Positives = 299/497 (60%), Gaps = 30/497 (6%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L ++I+  +  Y++   P I D +YD + R  +A+    P+LAR++ P     ++G   +
Sbjct: 12  LRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPT---QQVGARPS 68

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               +V H++P LSL   ++ E++  F+ RI    ++    S+ F+ EPK+DG  I++RY
Sbjct: 69  GRFPEVRHAVPMLSLSNAFSDEEVADFVRRID---ERLGRRSLQFSAEPKMDGLAISLRY 125

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALN 202
           E+G FV  A RGDG +GEDV+A +R I  IP R+   + P+++EVRGEVY+++ DF A N
Sbjct: 126 EEGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGEVYMARADFEAYN 185

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQK 260
           +     G K  ANPRNAA+G LR+L+P     R L+FF +G G+             L +
Sbjct: 186 ERARQQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHSGTLAQ 245

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +   GFPV+   +      G++ YY ++   R  LP+DIDG+VYK+D+ + Q+ +G  +R
Sbjct: 246 LGAWGFPVSGLCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSR 305

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL PV + G +++NATLHN D I 
Sbjct: 306 APRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIA 365

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            L           D+RVGD V+V+RAG+VIP+VV +I++ R P   P+  P+ CP+C S 
Sbjct: 366 RL-----------DVRVGDSVIVRRAGDVIPEVVSVILDRRPPGTTPWQMPTRCPVCGSE 414

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +VR+      +  AA RC+G L+C AQ+ E + HF SR A +I+GLG    D + ++   
Sbjct: 415 IVRE------EGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLG----DKYIETLVD 464

Query: 501 AFSIRIPADIFTLQRRQ 517
           A  ++  AD++ L R Q
Sbjct: 465 AGIVKSVADLYRLNRDQ 481



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 51/80 (63%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
           V+  ++ + +V TGTL ++ R  A+E +  LGA VS  +S+KT  ++ G   GSKL+KAQ
Sbjct: 742 VAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSVSKKTSFVVAGAEAGSKLDKAQ 801

Query: 703 QLGVKIMNEEQFLFLLQQYN 722
            LGV + +E++ L  L ++ 
Sbjct: 802 SLGVPVWDEDRLLAYLAEHE 821



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL  +I+  R  +LER +F+LGI HVG   A++LA+++   +        +I H    W 
Sbjct: 552 NLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLE--------LIRHLP--WP 601

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
              RVP +G  +A+++  F++   N  A++ LLK
Sbjct: 602 LFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLK 635


>gi|313674932|ref|YP_004052928.1| DNA ligase, nad-dependent [Marivirga tractuosa DSM 4126]
 gi|312941630|gb|ADR20820.1| DNA ligase, NAD-dependent [Marivirga tractuosa DSM 4126]
          Length = 671

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 223/712 (31%), Positives = 374/712 (52%), Gaps = 55/712 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A +++  L +++ Y++  YYQ S   I D E+D + +    +   FPDL  S+ P+    
Sbjct: 6   AEQKIQELSEKLHYYNYKYYQESVSEISDYEFDMMLKELIELEEKFPDLKTSDSPS---Q 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++  +   V H IP LSL   ++ E+L  F  R+ R      + S  +  E K DG
Sbjct: 63  RVGGDITKNFETVEHKIPMLSLGNTYSKEELDDFDGRVKRGL---GEESYEYFCELKFDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             I++ YE GK +    RGDG  G+D++   + I TIP +V     PE  E RGEV++ +
Sbjct: 120 VAISLHYENGKLIRGVTRGDGSKGDDITNNAKTIRTIPLKVRGEQFPEYFEARGEVFLPR 179

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  +N E    G    ANPRNAASG L+  +   +  R L+ F++      ++     
Sbjct: 180 EAFNEINREREENGEALLANPRNAASGTLKMQDSGVVAKRKLDCFLYSYA-GEDLPIDSH 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E ++++   GF V+   ++    + + ++ NE +  R +LP D DG+V KV+    Q+Q
Sbjct: 239 EEGIKQLEKFGFNVSQTYKKCKNINEVFNFINEWEEKRHSLPVDTDGIVIKVNSLGQQEQ 298

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++K+  + ++T L +I  Q+GRTG +TPVA LEPV++ G  +  A+LH
Sbjct: 299 LGFTAKSPRWAIAYKYKAESSTTILKEITYQVGRTGAVTPVANLEPVSLAGTTVKRASLH 358

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N + I  L           D+RVGD V V++ GE+IPK+  + + +R   +    +   C
Sbjct: 359 NANEIARL-----------DLRVGDTVHVEKGGEIIPKITGVDLTKRDLGSNEVEYIQEC 407

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +VR       +  A H C     C  Q    ++H++ R A +I+ +G++ +   
Sbjct: 408 PECGTELVR------AEGEAVHYCPNKKGCPPQIKGSIEHYIQRKAADIDSMGERTIHLL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       ++  AD++ L+         +  + GF D+S  NL   I + + I  E  +
Sbjct: 462 YEK----GLVKNVADLYDLKYED------VFELEGFKDLSTQNLLKGIEESKQIPFENIL 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIR VG  +A  L  ++ +  N A+            +  LI VP +G+ IAQ++VE
Sbjct: 512 FGLGIRFVGKTVAEKLGAHFKNIDNLAKA----------SFDELIEVPEIGERIAQSVVE 561

Query: 615 FYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++ +  NI  +E L       E+  ++   + NV   +ENK LV +G  +   R + +E 
Sbjct: 562 YFHDEDNIKLIERLKSAGLQFEIQETVIEQKGNV---LENKSLVVSGVFEHYGRDEIKEV 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + Q G  V + +S K DI++ G+N G +KL+KA++LGVKI++E +F  L+++
Sbjct: 619 IKQYGGKVVSAISGKVDILVAGENMGPAKLQKAEKLGVKIIDEVEFRSLIKE 670


>gi|306831054|ref|ZP_07464215.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426620|gb|EFM29731.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 652

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 236/704 (33%), Positives = 372/704 (52%), Gaps = 69/704 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L +F  R+     K +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEEFDRRV-----KAEFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L+   P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLAQ--PLNITVRGEAYLPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255
           F  +N+E    G+  +ANPRNAA+G LR+LN   + +     F    +  TS      Q 
Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLYQEVASTS---MTTQN 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++L
Sbjct: 229 DVLEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSFC 434
            DYI             +DIR+GD V+V +AG++IP V+ ++ ++R  D Q P   P  C
Sbjct: 349 VDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKR--DKQVPMPIPESC 395

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   
Sbjct: 396 PSCGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKL 448

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLE 551
           FK+E     +   ADI+ L          +E++L   GF + S   LY++I   +  S +
Sbjct: 449 FKAE----LVHDVADIYQL---------TVEDLLSLDGFKEKSAEKLYNAIQVSKENSAD 495

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIRHVGA+ +R L + +       + I+ ++A + D   S+  +  +G +IA +
Sbjct: 496 KLLFGLGIRHVGAKASRQLLEVF-------ETIDQLVAADAD---SIASIDGLGTVIANS 545

Query: 612 IVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQ 667
           +  ++       A E L  LK    +     K VS  +++    +V TG L+++ R++A+
Sbjct: 546 LRSYFAKKE---ATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAK 602

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           E +  LGA V+  +S+KTDI++ G + GSKL KAQ LG+ + +E
Sbjct: 603 EKLQDLGAKVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDE 646


>gi|325675870|ref|ZP_08155554.1| DNA ligase [Rhodococcus equi ATCC 33707]
 gi|325553841|gb|EGD23519.1| DNA ligase [Rhodococcus equi ATCC 33707]
          Length = 711

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 239/729 (32%), Positives = 366/729 (50%), Gaps = 52/729 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +++P  A    + R+    L + +  H   YY    PI+ D E+D L    +A+    PD
Sbjct: 17  EVVPASA----EDRERWQELAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALEERHPD 72

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY------RFW 118
           L     P+ P   +GG        V H    LSL+ +++ ++LR +I RI       R  
Sbjct: 73  L---RTPDSPTQLVGGGFATEFKAVDHLERMLSLDNVFDYDELRTWIGRIEAEVSDGRSA 129

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
                  + +  E KIDG  + + YE G+ V AA RGDG +GEDV+   R I  IP  L+
Sbjct: 130 GSAAHPDLHYLCEVKIDGVALNLVYENGRLVRAATRGDGRTGEDVTLNARTISDIPETLT 189

Query: 179 LN----IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DIT 233
            +    IP ++EVRGEV+    DF ALN  ++A G+ P+ANPRN+A+G LR+ NP     
Sbjct: 190 PSDEYPIPALLEVRGEVFFRLEDFAALNASLVADGKAPFANPRNSAAGSLRQKNPAVTAR 249

Query: 234 RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           R L    HGLG+T      GQY+    +   G PV+    +      +V         R 
Sbjct: 250 RRLGMICHGLGRTEGFDPVGQYDAYTALAAWGLPVSTHTSRVVGADAVVEKVKYWDEHRH 309

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + ++IDGLV KVDE SL ++LG  +R+PRW +++K+  ++A+T+L+DI + +GRTG +T
Sbjct: 310 DVEHEIDGLVVKVDEMSLHRRLGATSRAPRWAVAYKYPPEEATTKLVDIRVSVGRTGRVT 369

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           P A +EPV + G+ +  ATLHN   +K         R G  + +GD V++++AGEVIP+V
Sbjct: 370 PFAYMEPVLVAGSTVALATLHNASEVK---------RKG--VLIGDTVVIRKAGEVIPEV 418

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           +  +V+ R    + F  P+ CP C + +      K G   A  RC    +C AQ  ER+ 
Sbjct: 419 LGPVVDVRDGSEREFVMPTECPECGTTLA---PAKEGD--ADIRCPNQRSCPAQLRERVF 473

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
           H   R AF+IE LG +      +    A  I    D+F+L               G    
Sbjct: 474 HVAGRGAFDIEVLGYEAATALLQ----AGVISDEGDLFSLTEDDLLEAPLFRTKAGKLSA 529

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +   L D++   +   L R + +L IRHVG   AR+LA  + S +             N 
Sbjct: 530 NGRRLLDNLGSAKQQPLWRVLVALSIRHVGPTAARALASEFGSLERI----------ENA 579

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
               L  V  VG  IA A+V +++    R+I A +     V+    R E  V + +E   
Sbjct: 580 GVEELAAVDGVGGTIAAAVVAWFEVDWHRDIVA-KWRAAGVTMEDERDESIVRN-LEGLS 637

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +V TG+L+   R +A+E +   G   +  +S+KT  +++G+ PGSK  KA++LGV I++E
Sbjct: 638 IVVTGSLEGFSRDEAKEAILVRGGKAAGSVSKKTAFVVIGEAPGSKAAKAEELGVPILDE 697

Query: 712 EQFLFLLQQ 720
           + F  LL+ 
Sbjct: 698 DGFRRLLEH 706


>gi|325977951|ref|YP_004287667.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177879|emb|CBZ47923.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 652

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 236/704 (33%), Positives = 371/704 (52%), Gaps = 69/704 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRV-----KAEFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L+   P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLAQ--PLNITVRGEAYLPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255
           F  +N+E    G+  +ANPRNAA+G LR+LN   + +     F    +  TS      Q 
Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLYQEVASTS---MTTQN 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++L
Sbjct: 229 DVLEELSRYGFSVNPRRITTSSMTDIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSFC 434
            DYI             +DIR+GD V+V +AG++IP V+ ++ ++R  D Q P   P  C
Sbjct: 349 VDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKR--DKQVPMPIPESC 395

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   
Sbjct: 396 PSCGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKL 448

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLE 551
           FK+E     +   ADI+ L          +E++L   GF + S   LY++I   +  S +
Sbjct: 449 FKAE----LVHDVADIYQLT---------VEDLLSLDGFKEKSAEKLYNAIQVSKENSAD 495

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIRHVGA+ +R L + +       + I+ ++A + D   S+  +  +G +IA +
Sbjct: 496 KLLFGLGIRHVGAKASRQLLEVF-------ETIDQLVAADAD---SIASIDGLGTVIANS 545

Query: 612 IVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQ 667
           +  ++       A E L  LK    +     K VS  +++    +V TG L+++ R++A+
Sbjct: 546 LRSYFAKKE---ATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAK 602

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           E +  LGA V+  +S+KTDI++ G + GSKL KAQ LG+ + +E
Sbjct: 603 EKLQDLGAKVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDE 646


>gi|163841673|ref|YP_001626078.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
 gi|190359277|sp|A9WTZ3|DNLJ_RENSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|162955149|gb|ABY24664.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
          Length = 758

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 222/733 (30%), Positives = 383/733 (52%), Gaps = 61/733 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E S L ++I ++   YY  ++ ++ D+E+D L RR + I    P+L  ++ P     +
Sbjct: 33  RAEYSKLVEDIRHYRFAYYNEAESLVSDAEFDVLFRRLEEIEALHPELISNDSPT---QE 89

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFFTLEP 132
           +GGE++ +   V H+    SLE +++IE+L+ +I +     +K       +  + +  E 
Sbjct: 90  VGGEVSAAFTPVQHTSQIYSLEDVFSIEELQSWIIKAQANAEKLAGSIVAERPLRWLTEL 149

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           KIDG  + + Y  G+ V AA RGDG +GED++  +  I  IPR L   N+PE +E+RGEV
Sbjct: 150 KIDGLAVNLLYRNGQLVRAATRGDGITGEDITHNVLTIQEIPRQLRGENLPEEVEIRGEV 209

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           +I+  DFLALN++++  GR P+ANPRNAA+G LR+ +P D   R L+  VHG+G    + 
Sbjct: 210 FIASKDFLALNEQIVGTGRAPFANPRNAAAGSLRQKDPADTAKRPLSMLVHGIGSRIGLD 269

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    ++  G P +   +    +  ++ Y N     R  L ++IDG+V K+D+F+
Sbjct: 270 VASQSESYALLKAWGLPTSPYFKVLTGYQEVLDYINHYGEHRHDLLHEIDGIVIKIDDFA 329

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG  +R PRW +++K+  ++  T+LLDI + +GRTG +TP   +EPV + G+ +  
Sbjct: 330 SQNALGFTSRVPRWAVAYKYPPEEVHTKLLDILVNVGRTGRVTPFGVMEPVKVAGSTVEM 389

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP++V  ++  R    + F  
Sbjct: 390 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVLALRDGREREFVM 438

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +      K G +    RC    +C  Q  ER+ H   R AF+IE LG + 
Sbjct: 439 PTECPSCGTALA---PAKEGDVDI--RCPNAKSCPDQLRERVFHLAGRGAFDIEALGWEA 493

Query: 491 LDFFFKSEDPAFS-IRIPADIFTL------------QRRQQTSTTKIENILGF------- 530
                +  +P  + +R  A IF L            +++ +   + +  ++ +       
Sbjct: 494 AIALTQPAEPELAPVRNEAQIFNLVAEDLALVKIKREKKVKGVLSGVHELVPYFYSKGTE 553

Query: 531 -----GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                   +   L+  + K +   L R + +L IRHVG   +R+LA  + S       + 
Sbjct: 554 EKPSEPTSNTVKLFIELEKAKAQPLWRVLVALSIRHVGPTASRALATAFGS-------MA 606

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
            I A +  +   L  V  VG  IA A++E++    +   ++A   +        +++V  
Sbjct: 607 AIRAASEPE---LAEVDGVGPTIAAALIEWFAEDWHREIIDAWAADGVRMADERDESVRR 663

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +    +V TG+L+K  R +A+E +   G   +  +S+ TD ++ G+N G+KL+KA++LG
Sbjct: 664 TLAGLTIVVTGSLEKFNRDQAKEAIINRGGKSAGSVSKNTDYVVAGENAGTKLDKAEKLG 723

Query: 706 VKIMNEEQFLFLL 718
           V +++E  F  LL
Sbjct: 724 VTVLDEAGFETLL 736


>gi|320546461|ref|ZP_08040776.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812]
 gi|320448846|gb|EFW89574.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812]
          Length = 652

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 236/704 (33%), Positives = 370/704 (52%), Gaps = 69/704 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRV-----KAEFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L+   P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLAQ--PLNITVRGEAYLPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255
           F  +N+E    G+  +ANPRNAA+G LR+LN   + +     F    +  TS      Q 
Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTAVVAKRNLATFLYQEVASTS---MTTQN 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            +L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++L
Sbjct: 229 NVLEELSRFGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSFC 434
            DYI             +DIR+GD V+V +AG++IP V+ ++ ++R  D Q P   P  C
Sbjct: 349 VDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKR--DKQVPMPIPESC 395

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   
Sbjct: 396 PSCGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKL 448

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLE 551
           FK+E     +   ADI+ L          +E++L   GF + S   LY++I   +  S +
Sbjct: 449 FKAE----LVHDVADIYQLT---------VEDLLSLDGFKEKSAEKLYNAIQVSKENSAD 495

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIRHVGA+ +R L + +       + I+ ++A + D   S+  +  +G +IA +
Sbjct: 496 KLLFGLGIRHVGAKASRQLLEVF-------ETIDQLVAADAD---SIASIDGLGTVIANS 545

Query: 612 IVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQ 667
           +  ++       A E L  LK V  +     K V   +++    +V TG L+++ R++A+
Sbjct: 546 LRSYFAKKE---ATELLHELKNVGVNFAYLGKKVPKDAQLAGLTVVLTGKLERLTRNEAK 602

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           E +  LGA V+  +S+KTDI++ G + GSKL KAQ LG+ + +E
Sbjct: 603 EKLQDLGAKVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDE 646


>gi|332291077|ref|YP_004429686.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169163|gb|AEE18418.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5]
          Length = 664

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 229/714 (32%), Positives = 377/714 (52%), Gaps = 59/714 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE+   ++ +L  E+  H+  YY    P I D ++D   ++ +A+  A P+    +DP
Sbjct: 1   MTIEE---QILALRNELQSHNHSYYVLDTPTISDFDFDQKLKQLEALEAAHPEF---DDP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P +++GG +  +   + H     SL+  ++ EDL  +  R+    +K  D  + +T E
Sbjct: 55  NSPTHRVGGAVTKNFETIVHENRMYSLDNSYSKEDLEDWEARV----KKMVDGEVNYTCE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++ YE G+ + A  RGDG  G+DV+  I+ I ++P  L  + PE  ++RGE+
Sbjct: 111 LKYDGASISLTYENGELLKAVTRGDGLQGDDVTTNIKTIKSVPLKLKGDYPEKFDIRGEI 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
            +    F A+N E   +G + Y NPRN ASG L+  +  ++ R  L   ++ +   +   
Sbjct: 171 VLPWEGFHAMNAEREELGFELYRNPRNTASGSLKLQDSAEVARRPLQCLLYNITGNNLGI 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A  Q + LQK R  GF V    + A     ++ + N     R  LPY+ DG+V KV+   
Sbjct: 231 AT-QMDSLQKARDWGFRVPEAAKLAKNIDEVLEFINHWDVARRDLPYETDGVVVKVNGLQ 289

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A++PRW +++KF  +Q STRL +I  Q+GRTG +TPVA LEPV + G  +  
Sbjct: 290 QQEELGYTAKAPRWAMAYKFKAEQVSTRLREITYQVGRTGAITPVANLEPVELAGTTVKR 349

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D I+ L           DIR GD V V++ GE+IPK++ + + +R  D++P ++
Sbjct: 350 ASLHNADQIERL-----------DIREGDEVFVEKGGEIIPKIIAVDLTKRPADSEPTTY 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C + +VR    K G+  A H C   + C  Q + R++H++SR A +I+GLG + 
Sbjct: 399 ITECPECSTPLVR----KEGE--AQHYCPNDMGCPTQIIGRIQHYISRKAMDIDGLGGET 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            I   AD++ L   Q     ++         S  NL   +     I  
Sbjct: 453 VALLVNE----GLIVNYADLYELTVAQLLPLERM------AQKSAENLVSGVQASVQIPF 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIR+VG  +A+ LAK+Y S       I+ II+   ++   L+ V  +G  IA+
Sbjct: 503 EKVLFGLGIRYVGETVAKKLAKHYKS-------IDAIISATEEE---LVAVDEIGSKIAE 552

Query: 611 AIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +++ F+    +I  +E L       E+S        N S ++     V +G  + + R++
Sbjct: 553 SVMAFFAKAEHITLIERLRSYGVQLEIS---AEKLANQSDKLAGYIFVVSGVFE-MPRNE 608

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            ++ +   G  VS+ +S KT  ++ GD  G SKLEKA+ LGV I++EE+FL L+
Sbjct: 609 LKKLIEDNGGKVSSSISSKTTYVVAGDKMGPSKLEKAESLGVTIISEEEFLNLV 662


>gi|300771799|ref|ZP_07081670.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761185|gb|EFK58010.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 673

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 226/715 (31%), Positives = 381/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + +++++ L QE+++++  YY  ++ +I D ++D   +  +A+   +P  A   DP
Sbjct: 1   MSAVEIQEKIAQLTQELNHYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG++      V H  P LSL   ++ ++LR F  RI    +K   +   +  E
Sbjct: 58  NSPTRRVGGDITSRFNTVKHRWPMLSLGNTYSQDELRDFDQRI----RKIIGDDFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
            K DG  I++ Y+ GK V    RGDG  G++V+A +R I +IP  L + + PE  E+RGE
Sbjct: 114 LKFDGLSISLTYKDGKLVQGVTRGDGTQGDEVTANVRTIRSIPLTLKTKDYPEEFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL--GKTS 247
           +++ K+ FL LN E    G + YANPRN A+G ++  +  ++ R  L+ F++ L      
Sbjct: 174 IFMHKSAFLRLNKEREENGDQIYANPRNFAAGTIKLQDSAEVARRPLDCFLYFLYMDNRR 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           + F+   +E L+ +R  GF V +  R  +    + S+ N   + R  L Y+IDG+V KV+
Sbjct: 234 KHFST-HWESLEAVRKWGFHVCDHTRLCSNIDDVFSFINYWDTERHNLSYEIDGIVIKVN 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +++ Q++LG  A++PRW  S+KF  ++  T L  I  Q+GRTG +TPVA L+PV++ G  
Sbjct: 293 DYAQQEELGFTAKNPRWATSYKFKAERVETILKSISYQVGRTGAVTPVANLQPVSLAGTT 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN + I  L           D+   D V V++ GE+IPKV+   + +R PDA P
Sbjct: 353 VKRASLHNANEIARL-----------DLHEQDTVYVEKGGEIIPKVIAANLEKRKPDAIP 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F +P+ CP CQ+ +VR+         A H C     C  Q + +++HF+ R   +IEG+G
Sbjct: 402 FHYPTHCPECQTLLVREEGE------AVHYCPNEDGCPPQIIGKMQHFIGRKMMDIEGMG 455

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++ FFK       IR   DI++L+  ++     ++ +  FG  S+ N+   I K + 
Sbjct: 456 NETIETFFKKG----LIRNVVDIYSLKEHEE----DLQKLERFGQKSIDNMLRGIEKSKE 507

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              E+ +F+LGIRHVG  IA+ LA Y+ +    AQ     IA   D          +G  
Sbjct: 508 KPFEKVLFALGIRHVGETIAKKLALYFKNIDALAQASVEEIASVQD----------IGGR 557

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRH 664
           IA+++ ++   P +   ++  LK+        EK V    + +E K  + +G      R 
Sbjct: 558 IAESVHQYLNTPIHQQQIQK-LKDYGLQFEIEEKEVVLAGNGLEGKTFLISGVFADFSRE 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +    +   G  + + +S K + ++ GD  G SKL KA++L V I+NE++ L L+
Sbjct: 617 ELTALIESHGGKMVSSISAKLNYLVAGDKMGPSKLAKAEKLQVPIINEQELLVLI 671


>gi|167750769|ref|ZP_02422896.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702]
 gi|167656204|gb|EDS00334.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702]
          Length = 660

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 232/705 (32%), Positives = 366/705 (51%), Gaps = 51/705 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQ + E   L ++   H+  YY    P I D EYD L RR   I    P++      + P
Sbjct: 4   EQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSE---SSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG    +  KVTH +   SL+ +++  +L +F  R+     KK      + +EPKI
Sbjct: 61  TQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERV-----KKAVGKAVYCVEPKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ Y+ G F   + RGDG  GED++  ++ I +IP  L+  IP  IEVRGEVY+ 
Sbjct: 116 DGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMELNEKIP-FIEVRGEVYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K DF  L  + +    +P  NPRNAA+G LR+ +     +R L+ FV  L + +      
Sbjct: 175 KADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIAGRELTC 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  M+ LGF V +G +  +     VS   E+   R +  YDIDG V KVD F L+ 
Sbjct: 235 HSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDNFELRN 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+ P+W ++ K+  ++  T+LLDI+I +GRTG LTPVA  EPV + G  ++ A L
Sbjct: 295 ELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSRAVL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+DYI             +DIR+GD + V++AG++IP+VV  + +    +++PF  P  
Sbjct: 355 HNQDYID-----------SKDIRIGDIIAVRKAGDIIPEVVRSVSHAE--NSEPFVIPHI 401

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C  +  R  +       A  RC   + C AQ L+ ++HF SR A NI+GLG+  +  
Sbjct: 402 CPVCHGKAERAEDE------AVIRCV-NIDCPAQLLKNIEHFASRPAMNIDGLGEAVVKQ 454

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++      I   AD++ LQ++       +E + GF  VS + L  +I   +  S +R 
Sbjct: 455 LVENR----LISTVADLYGLQQQD------LEMLPGFAKVSASKLIANIENSKANSPDRL 504

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGI+ +G + A+ L K++ S +  ++     I+           V   GDI+A  I 
Sbjct: 505 LFALGIKGIGQKNAQLLMKHFGSIEKLSETSPEEIS----------AVENFGDILANNIF 554

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
                P ++  +   LK    +        S ++     V TGTL  + R +A+  + Q 
Sbjct: 555 TALHEP-HMTELIKRLKSYGVNTVYQSDVKSDKLAGLTFVITGTLPDMTRDEAKTLIEQN 613

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G   S  +S+KT  ++ G+  GSKL KAQQLGV +++++Q + ++
Sbjct: 614 GGKCSGSVSKKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMI 658


>gi|206895761|ref|YP_002246502.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM
           5265]
 gi|254781298|sp|B5Y6V5|DNLJ_COPPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206738378|gb|ACI17456.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM
           5265]
          Length = 666

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 230/718 (32%), Positives = 385/718 (53%), Gaps = 65/718 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+A+K +  L + I YH+  YY    P I D EYD L R    +   FP+      P
Sbjct: 1   MTREEAKKRIERLRELIEYHNYRYYVLDSPEISDEEYDKLYRELVTLEKQFPEFI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G         VTH +P LSL+  +  ++++ F  R+     ++    + +  E
Sbjct: 58  DSPTQRVGAPPAKEFATVTHEVPMLSLDNAFTEDEIKAFDQRVRSALNQQ---HVEYFCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
            K+DG  +++ YE G FV  + RG+G+ GEDV+A ++ I TIP R+   NIP ++E+RGE
Sbjct: 115 HKLDGLAVSLLYENGLFVRGSTRGNGYVGEDVTANLKTIKTIPLRLKGENIPPVVEIRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
            ++   DF ALN++  A+G+  +ANPRNAA+G +R+L+ + IT  R L F  +G G    
Sbjct: 175 AFMMLRDFEALNEQRQALGQPLFANPRNAAAGSIRQLD-SSITAQRKLYFMPYGFGLVQG 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  + Q   L++ +  GF +N   R+A++    + +       R  LP+  DG+V KV+ 
Sbjct: 234 MDFETQERFLKQCQEWGFRINEHNRKASSIEEALEFIRYWTEHRVELPFPADGVVIKVNN 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
                 LG  A +PR+ I++KF  ++  T+L D+  Q+GRTGI+TPVA LEPV + GA +
Sbjct: 294 LRYWDILGTTAHAPRYAIAYKFPAEEKETKLKDVVFQVGRTGIITPVAMLEPVVLDGATV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN D ++ L           D+R GD V +KRAG VIP+++ +   +R    +  
Sbjct: 354 SRATLHNFDIVRQL-----------DVRKGDVVKLKRAGMVIPEIIGVAAEKRTGKEEQI 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C      D         A  +C   + C AQ    L H+ SRDA +I+GLG+
Sbjct: 403 EPPTTCPVCGGPTEWD--------GAYLKCV-NITCPAQLKGHLLHWASRDAMDIDGLGE 453

Query: 489 QQLD-----FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
             ++        K+    + + +  D+ TL R  Q S TK              LY++I 
Sbjct: 454 SIIENLVDMGLVKNIADLYKLSV-QDLLTLPRLAQRSATK--------------LYENIQ 498

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + ++    R ++ LGI  VG + A+ LA+++ S       IN ++    D+   L  +  
Sbjct: 499 RSKDRPFFRVLYGLGIPRVGLKTAQMLAEHFGS-------INALLNATMDE---LTSIEG 548

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           +G   A+ I++  Q+P+    V  L+ ++ +  +   ++++   ++    VFTGTL  + 
Sbjct: 549 IGTDTAETILKALQSPQ----VHELIDQLKTLGLKMEQESIEGPLKGLTFVFTGTLTSMS 604

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R  A + V  LG  V++ +S+  D ++VG++PGSKL+KAQ+LG+ I++EE FL ++++
Sbjct: 605 RGDAAKLVQSLGGKVASSVSKNVDYVVVGEDPGSKLDKAQKLGLTIIDEEAFLKMVKR 662


>gi|15827911|ref|NP_302174.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae TN]
 gi|221230388|ref|YP_002503804.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae Br4923]
 gi|7674013|sp|O33102|DNLJ_MYCLE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781376|sp|B8ZS27|DNLJ_MYCLB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2414536|emb|CAB16425.1| DNA ligase [Mycobacterium leprae]
 gi|13093464|emb|CAC30658.1| DNA ligase [Mycobacterium leprae]
 gi|219933495|emb|CAR71800.1| DNA ligase [Mycobacterium leprae Br4923]
          Length = 694

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 235/729 (32%), Positives = 374/729 (51%), Gaps = 53/729 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   +  PI    ++Q RK    L +E+  H   YY    PII D+E+DAL  R   +  
Sbjct: 1   MSSPEADPIGPEVLQQWRK----LTEEVREHQFRYYVRDAPIISDAEFDALLDRLTVLEE 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIYRFWQ 119
             P+L     P+ P   +GG   ++ F  T  +  + SL+  ++ ++L  ++TRI    +
Sbjct: 57  QHPELC---TPDSPTQLVGGAGFMTDFVATEHLERMFSLDNAFSGDELNAWVTRI----R 109

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
            +  N   +  E KIDG  +++ Y  G+   A  RGDG +GEDV+   R I  +P  L++
Sbjct: 110 AEIGNDAHYLCELKIDGVALSLVYRDGRLTRATTRGDGRTGEDVTLNARTIEDVPERLTV 169

Query: 180 N----IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-R 234
           +    +PE++EVRGEV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R
Sbjct: 170 SDIYPLPEVLEVRGEVFFRVVDFQALNTSLVEEGKNPFANPRNSAAGSLRQKDPAVTAHR 229

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSI 291
            L    HGLG         Q++    +R  G PV+      N   G+   ++Y+ E    
Sbjct: 230 KLRMICHGLGHIEGFRPATQHQAYLALRDWGLPVSEHTTLVNDIAGVQGCIAYWAEH--- 286

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R  + ++IDG+V K+DE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG 
Sbjct: 287 RHEVDHEIDGIVVKIDEVTLQRRLGSTSRAPRWAIAYKYLPEEAQTKLLDIRVNVGRTGR 346

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TP A + PV + G+ +  ATLHN   +K         R G  + +GD V++++AG+VIP
Sbjct: 347 VTPFAFMTPVKVAGSTVGQATLHNPSEVK---------RKG--VLIGDTVVIRKAGDVIP 395

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +V+  +V+ R    + F  P+ CP C + +  +   K G   A  RC    +C  Q  ER
Sbjct: 396 EVLGPVVDLRDGSEREFVMPTTCPECGTTLAPE---KEGD--ADIRCPNARSCPGQLRER 450

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           + H  SR A +I+GLG +       ++     I    D+FTL  +    T    N  G  
Sbjct: 451 VFHVASRSALDIQGLGYEAGVALLAAQ----VITSEGDLFTLTEKALLRTELFRNKAGEL 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
             +   L  +++K +   L R + +L IRHVG   AR+LA  + S       ++ I+A +
Sbjct: 507 SANGKRLLVNVDKAKTAPLWRVLVALSIRHVGPTAARALATEFGS-------VDAILAAS 559

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
            +    L  V  VG  IA A+ E++    +   V          +   + +V    E   
Sbjct: 560 PE---QLAAVEGVGTTIAAAVTEWFTVDWHRVIVNKWRAAGVRMVDERDTSVLPTCEGLT 616

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +V TG+L    R  A+E +   G  V+  +S+K   ++VGD PG K +KA +LGV I+NE
Sbjct: 617 IVVTGSLAGFSRDDAKEAIVARGGKVAGSVSKKIAYVVVGDLPGYKYDKAVELGVPILNE 676

Query: 712 EQFLFLLQQ 720
           + F  LL+Q
Sbjct: 677 DGFRLLLEQ 685


>gi|291513768|emb|CBK62978.1| DNA ligase, NAD-dependent [Alistipes shahii WAL 8301]
          Length = 674

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 220/705 (31%), Positives = 379/705 (53%), Gaps = 50/705 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+ +  L +++  H+  YY  + P I D E+DA+ R    +  A P+ A   DPN P  +
Sbjct: 3   RERIEELRRQLELHNFKYYVENAPEISDFEFDAMMRELQDLERAHPEYA---DPNSPSVR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++      V H    LSL   +++++L +FI RI R     D     +  E K DGT
Sbjct: 60  VGSDLTAEFRTVKHRYAMLSLGNTYSLDELHEFIGRIEREAGATD-----YVCELKFDGT 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++ YE G+ V A  RGDG  G+DV+A +R + T+P R+   + P++ E+RGE+ +   
Sbjct: 115 AISLTYEHGRLVRAVTRGDGVEGDDVTANVRTVRTVPLRLRGTDWPDLFEIRGEILMPYA 174

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A G + +ANPRNAA+G L++ +   + R  L+  ++ L    E+     +
Sbjct: 175 SFDRLNAEREANGEQLFANPRNAAAGTLKQQSSAVVARRGLDCTLYQLA-GDELPFTSHW 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+K R  GF V++  R   +   I ++     + R  LP+  DG+V KV++F++++QL
Sbjct: 234 ESLEKARQWGFKVSDAARICRSVAEIDAFIEHWDTARRRLPFPTDGVVIKVNDFAVRRQL 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++P+W +++KF  ++A+TRL  +  Q+GRTG +TPVA LEPV + G  +  ATLHN
Sbjct: 294 GFTAKAPKWAVAYKFKAERAATRLDSVSFQVGRTGAITPVANLEPVLLAGTTVRRATLHN 353

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            + +  L           DIR GD V V++ GE+IPK++ + + +R  D++PF + + CP
Sbjct: 354 AEQMAQL-----------DIRPGDTVYVEKGGEIIPKIIGVDLAQRPADSRPFEYITVCP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR      G+  A H C     C  Q + R+ HF+ R A +IEGLG++ ++  +
Sbjct: 403 ECGTPLVR----YEGE--AKHYCPNQSGCRPQIIGRIIHFIRRKALDIEGLGEETVELLY 456

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           ++      +R  AD++ L+  Q     ++      G+ S  N+  S+ + + +  +R +F
Sbjct: 457 ENG----LVRDVADLYDLRAEQLAPLPRL------GEKSADNIIRSVERSKAVPFQRVLF 506

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR VG   A+ LA+++ S       ++ ++    ++   L+    VG  IA AI+E+
Sbjct: 507 GLGIRFVGETTAKYLAEHFRS-------LDAVMRATREE---LVEADEVGGRIADAIIEY 556

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +    N+  +  L            +  S  +  +  V +G   +  R + +E +   G 
Sbjct: 557 FAEEDNLRIIRRLRAAGLQFEAEARRLASEALAGRSFVVSGKFTR-SRDEMKELIELHGG 615

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
              A +S   D ++ GD  G +KL+KA++LGV+I++EE+F+ +++
Sbjct: 616 RNLAAVSGSVDYLVAGDKMGPAKLKKAEKLGVRIISEEEFIAMIE 660


>gi|86142854|ref|ZP_01061293.1| DNA ligase [Leeuwenhoekiella blandensis MED217]
 gi|85830886|gb|EAQ49344.1| DNA ligase [Leeuwenhoekiella blandensis MED217]
          Length = 663

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 226/710 (31%), Positives = 372/710 (52%), Gaps = 57/710 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++ +L QE+  ++  YY   KP + D  +D   +    +    P+     D N P  
Sbjct: 3   AQEKIEALRQELRQYNYEYYVLDKPQVDDYTFDQKLKELQEMEAKHPEFY---DANSPTL 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE+  +   V H     SL+  ++ EDL  +  RI +      D ++ +  E K DG
Sbjct: 60  RVGGEVTKNFATVKHEHRMYSLDNSYSQEDLEDWEKRIKKLV----DGAVEYVCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YE+G  V A  RGDG  G+DV+  ++ I ++P  L  + P   ++RGE+ +   
Sbjct: 116 ASISLTYEEGVLVRAVTRGDGVQGDDVTNNVKTIRSVPLKLKGDFPAKFDIRGEIVLPLA 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-GKTSEIFAKGQ 254
            F A+N E +  G +PY+NPRN ASG L+  +  ++  R L   ++ + G+  +I +  Q
Sbjct: 176 GFAAMNAERVEAGDEPYSNPRNTASGSLKLQDSAEVAKRPLECLLYSIVGENLDIAS--Q 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L+K R  GF V    ++  +      + N     R  LPY+ DG+V KV+ F  Q++
Sbjct: 234 FESLEKARSWGFKVPEVAKKTASTAETFEFLNYWDEHRHDLPYETDGVVIKVNSFRQQEE 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A++PRW +++KF  +QA T L  I  Q+GRTG +TPVA L PV + G ++  A+LH
Sbjct: 294 LGFTAKAPRWAMAYKFKTEQAETVLEKITYQVGRTGAITPVANLVPVQLAGTIVKRASLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L           D+R GD V V++ GE+IPK+V +   +R PD+    + S C
Sbjct: 354 NADQIEKL-----------DVREGDHVYVEKGGEIIPKIVGVDFEQRDPDSTATEYISEC 402

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +VR    + G+  A H C   + C  Q + R++HF+SR A +IEGLG + +   
Sbjct: 403 PECGTTLVR----QEGE--AQHYCPNDMGCPPQIIGRIQHFISRKAMDIEGLGGETVALL 456

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    I+  AD++TL++ Q      I  +    + S  NL   I   + I  ER +
Sbjct: 457 VNE----GLIKNYADLYTLKKEQ------ILPLERMAEKSADNLIKGIEASKQIPFERVL 506

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIR+VG  +AR LAK + +    A+              +L+ V  +G  IAQ++V 
Sbjct: 507 FGLGIRYVGETVARKLAKQFKTIDALAEASEE----------TLVAVDEIGARIAQSVVS 556

Query: 615 FYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           F+    N   ++      L  E+  S+    +N + +++ +  V +G   K+ R + ++ 
Sbjct: 557 FFSEEANQDLIKRLKDYGLQLELDASV---LENQTDKLQGQTFVISGVFSKVSRTELKKL 613

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +   G   S  +S KT+ ++ G+N G SKL+KA++LGV I++E+ FL +L
Sbjct: 614 IEDNGGKASGSISSKTNYLVAGENMGPSKLQKAEKLGVPIISEDDFLAML 663


>gi|288904984|ref|YP_003430206.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34]
 gi|288731710|emb|CBI13271.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34]
          Length = 652

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 236/704 (33%), Positives = 370/704 (52%), Gaps = 69/704 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRV-----KAEFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L+   P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLAQ--PLNITVRGEAYLPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255
           F  +N E    G+  +ANPRNAA+G LR+LN   + +     F    +  TS      Q 
Sbjct: 172 FDKINKERRDSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLYQEVASTS---MTTQN 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++L
Sbjct: 229 DVLEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G +++ ATLHN
Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTMVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSFC 434
            DYI             +DIR+GD V+V +AG++IP V+ ++ ++R  D Q P   P  C
Sbjct: 349 VDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKR--DKQVPMPIPESC 395

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   
Sbjct: 396 PSCGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKL 448

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLE 551
           FK E     +   ADI+ L          +E++L   GF + S   LY++I   +  S +
Sbjct: 449 FKVE----LVHDVADIYQLT---------VEDLLSLDGFKEKSAEKLYNAIQVSKENSAD 495

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIRHVGA+ +R L + +       + I+ ++A + D   S+  +  +G +IA +
Sbjct: 496 KLLFGLGIRHVGAKASRQLLEVF-------ETIDQLVAADAD---SIASIDGLGTVIANS 545

Query: 612 IVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQ 667
           +  ++       A E L  LK    +     K VS  +++    +V TG L+++ R++A+
Sbjct: 546 LRSYFAKKE---ATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAK 602

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           E +  LGA V+  +S+KTDI++ G + GSKL KAQ LG+ + +E
Sbjct: 603 EKLQDLGAKVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDE 646


>gi|300709542|ref|YP_003735356.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3]
 gi|299123225|gb|ADJ13564.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3]
          Length = 703

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 238/724 (32%), Positives = 381/724 (52%), Gaps = 57/724 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L PI+ L  ++A +E   L + I +HD  YY  + P I D  YD L +R   I  +F   
Sbjct: 17  LTPIDEL--DEAEREARRLREAIRHHDRRYYVENDPEIADRTYDTLFQRLVDIEESFG-- 72

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              + P+ P  ++GGE    L  V H  P LS+++  +  D+R+F  R+ R     +   
Sbjct: 73  --LQIPDSPTRRVGGEPVEELETVEHVAPMLSIQQSGDAADVREFAERMDR-----EIGE 125

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +T EPK DG  I + Y++G F  A  RG+G  G+DVSA +R I +IP+ L    P+ +
Sbjct: 126 VTYTCEPKFDGVSIEVVYDEGVFERAVTRGNGREGDDVSANVRTIRSIPQRLRGEYPDFL 185

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
            VRGE+++ ++ F A N E +  G +P+ANPRNA +G +R+L+PT    R L+ F + + 
Sbjct: 186 AVRGEIFMPRDAFQAYNRERVERGDEPFANPRNATAGTIRQLDPTVTAERPLDCFFYDIL 245

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             SE  A   +E L  +   G   N+    A      ++Y + +   R  L Y+IDG+V 
Sbjct: 246 DASEGIAT-HWEELDALESYGLQTNDRAELAADIDEAIAYRDRLVEDREGLNYEIDGVVI 304

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVDE +  ++LG  +R  RW  ++KF  +   T + D+ +Q+GRTG LTPVA L+PV++G
Sbjct: 305 KVDEKAACEELGTTSRHYRWAFAYKFPARAGETAIQDVALQVGRTGRLTPVALLDPVDVG 364

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+LHN   I+            +++ VGD V V+RAG+VIP  VD +V +R   
Sbjct: 365 GVTVSRASLHNPAEIE-----------EKEVNVGDVVRVERAGDVIP-YVDEVVEKRS-- 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           +  F FP+ CP+C S + RD     G +     CTGGLAC AQ    ++++ S    +IE
Sbjct: 411 SGYFEFPATCPVCDSAIERD-----GPIAF---CTGGLACPAQLRRSVEYYASDSGLDIE 462

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +++D   ++     S+   AD++ L+R        +  + G+G  S  NL   +  
Sbjct: 463 GLGGERVDQLLEAGLVEESV---ADLYRLER------ADLVELEGWGQKSAENLLAELEA 513

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++  L  F+ ++GI HVG   AR LA  +        +++ ++  + D+   L  V  +
Sbjct: 514 SKSPPLFAFLAAIGIPHVGRATARELAGAF-------GDLDGLMDASEDE---LREVDEI 563

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQR 663
           G+++A+ I +F+ +  N   +   L+E      R E   S + +    +VFTG+L    R
Sbjct: 564 GEVVAREIRDFFDSEGNRRVLRE-LREAGVEPERAEDRESGDTLSGLTVVFTGSLPDRTR 622

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +AQ  +   G  V+  +S  TD ++VG+NPG SK E A   GV  +  E+F  L+ +  
Sbjct: 623 SEAQGLIEGAGGSVTGSVSGNTDYLVVGENPGSSKREDAADEGVPELTPEEFEALVDESE 682

Query: 723 TTLR 726
              R
Sbjct: 683 EADR 686


>gi|291542878|emb|CBL15988.1| DNA ligase, NAD-dependent [Ruminococcus bromii L2-63]
          Length = 661

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 244/714 (34%), Positives = 380/714 (53%), Gaps = 73/714 (10%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A+     L +++ YH++ YY   +P I D +YD L R  + I   FP L   + P  P N
Sbjct: 6   AQNRAQELTKQLEYHNNLYYNQDEPEISDYDYDMLMRELENIEKEFPSL---KSPMSPTN 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG        VTH +   SL   ++ E+LR+F  R+     ++   ++ + +EPK DG
Sbjct: 63  RVGGNAGEKFSPVTHEVVMESLHDSFSHEELREFDARV-----RETVPNVRYVVEPKFDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             ++  YE G FV  + RGDG  GEDV+  +  I ++P+ +  N PE +EVRGEVY+S N
Sbjct: 118 LSVSCEYENGVFVRGSTRGDGSVGEDVTENLMTIKSLPKRIP-NAPEYLEVRGEVYMSFN 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F AL         K + NPRNAA+G LR+ N   IT  R L+ FV  + +   +  +  
Sbjct: 177 SFDALTRRQEENEEKTFKNPRNAAAGSLRQKN-AKITAQRSLDIFVFNIQQIRGMTIESH 235

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE-------MKSIRSTLPYDIDGLVYKVD 307
            + L  +  LGFP          F+ +    +E       + ++R  L Y IDG V KVD
Sbjct: 236 IQGLDYLTELGFPT--------AFYSVYDNVDEVIEEIERIGNMRGELDYAIDGAVVKVD 287

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F+ ++ LG  A+ P+W  ++K+  ++  T+LL+I+I +GRTG+LTPV   EPV + G  
Sbjct: 288 SFASRRLLGSTAKYPKWAEAYKYPPEEKPTKLLNIEINVGRTGVLTPVGNFEPVLLAGTT 347

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN+D+I   D  G        I VGD V++++AGE+IP+V+   V E   +A P
Sbjct: 348 VSRATLHNKDFI---DEKG--------ICVGDTVIIRKAGEIIPEVLS--VKEHAENAVP 394

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FPS CP C + V  D         AA RCT    C AQ    L HFVSRDA +I+GLG
Sbjct: 395 FEFPSVCPSCGNPVTHDEGE------AAIRCT-NTDCPAQLTRHLIHFVSRDAMDIDGLG 447

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              L+   +  D    ++ PAD++ L+    +S  +        + S  NL  SI K + 
Sbjct: 448 PAILE---QLSDEGL-VKSPADLYRLKAEDISSLERK------AEKSAQNLISSIEKSKE 497

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R +F+LGIR++G + A+ +       +NFA  I++I++   +D+    ++   G +
Sbjct: 498 NELFRLVFALGIRNIGLKAAKIIC------ENFAT-IDDIMSAKAEDFE---KIDGFGAV 547

Query: 608 IAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +A+++  ++        I  +++L  ++ PS     KN     E K  V TGTL  + R 
Sbjct: 548 MAESLENYFSLDGTKELIADLKSLGLKMKPS---QPKNTGGLFEGKTFVLTGTLPTMTRS 604

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A + + Q G   S+ +S+KT  ++ G++ GSKL KAQ LGV I++EE+   +L
Sbjct: 605 EASKLIEQNGGKTSSSVSKKTSYVLAGEDAGSKLTKAQTLGVTIISEEELKEML 658


>gi|194335632|ref|YP_002017426.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1]
 gi|254781384|sp|B4SCX5|DNLJ_PELPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194308109|gb|ACF42809.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1]
          Length = 674

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 229/715 (32%), Positives = 376/715 (52%), Gaps = 58/715 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A + ++ L +EI  H   YY  +KP + D E+D L  +   +   FP L     P+ P 
Sbjct: 6   RAAEAIAQLRREIERHTHLYYVEAKPELSDFEFDQLLDQLITLERQFPQLL---TPDSPS 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +      V H  P LSL   ++I ++ +F  R+ +    +         E K D
Sbjct: 63  QRVGGAITREFPAVQHREPMLSLSNSYSITEVEEFYNRVRKLLALEGVVEQEMVAELKFD 122

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-------PEIIEVR 188
           G  I++ Y+ G  V  A RGDG  G+D++A ++ + TIP  L   +          IEVR
Sbjct: 123 GVAISLIYQDGILVRGATRGDGRQGDDITANLKTVATIPLRLEETLVAALQGEERAIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLG 244
           GEV++ K DF  LN+      R  +ANPRNA +G L+  +  ++ R    ++ +++ GL 
Sbjct: 183 GEVFMRKEDFERLNESRPDEDR--FANPRNATAGSLKLQDSGEVARRSMSFVAYYLKGLK 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             S          L+ +  LGF   +  R  NT   I +Y  E    R  LPY+ DG+V 
Sbjct: 241 DES----TPHIHRLELLARLGFFTGDHYRLCNTLEEINTYIAEWAEKRWQLPYETDGVVL 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+++   +++LG  A+SPRW I++K+  +QA + L ++  Q+GR G +TPVA LEPV + 
Sbjct: 297 KLNDVPFREKLGATAKSPRWAIAYKYPAQQARSVLQNVLFQVGRLGTITPVAELEPVLLA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ ++ +TLHN D I+ L   G ++R        DRV+++++GEVIPKVV  +  ER  D
Sbjct: 357 GSTVSRSTLHNFDEIERL---GLMLR--------DRVIIEKSGEVIPKVVRTLFEERPAD 405

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A P   P+ CP C + +VR  N        ++ C     C AQ   RL HF SR+A +I+
Sbjct: 406 AMPILPPTHCPSCGAPLVRPENE------VSYSCPNEEECPAQIKGRLLHFASRNAMDIQ 459

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
            LG    D   +       ++ P D++ LQ  Q      +E +   G  S  N+  ++ K
Sbjct: 460 TLG----DALVEQLVAKGLVKDPGDLYFLQEPQ------LEKLERMGPKSAQNILRALEK 509

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R  S ER +++LGIRHVG   AR L++   S         +++   +++ L+ I  P +
Sbjct: 510 SREKSYERLLYALGIRHVGRATARELSQACPSI--------DLLREASEEQLATI--PDI 559

Query: 605 GDIIAQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G ++A++I++++  P     +E L    +  S    ++ V+   E   ++FTG+L++  R
Sbjct: 560 GPVVARSIIDYFAKPSWPHLLEKLRTAALQLSASEPKEQVNRNFEGVTVLFTGSLERYDR 619

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            KA E V + G  V   +S+KT +++ G +PGSKL+KA +LGV++++E++F  +L
Sbjct: 620 QKASELVLERGGRVVGSVSKKTGMVVAGQDPGSKLQKANKLGVRVVSEDEFEAML 674


>gi|317132010|ref|YP_004091324.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3]
 gi|315469989|gb|ADU26593.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3]
          Length = 661

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 229/696 (32%), Positives = 359/696 (51%), Gaps = 52/696 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + +S H+  YY    P I D EYD + R  + +  A P++     P+ P  ++GGE  
Sbjct: 10  LRKALSRHNYLYYVLDAPEIEDFEYDRMLRELEELEAAHPEIV---TPDSPTQRVGGEAV 66

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                V H +P  SL+ ++++E++R F  R++        +++ + +EPKIDG  + + Y
Sbjct: 67  GQFEPVRHEVPMESLQDVFSVEEVRAFDERMHAAL-----STVRYAVEPKIDGLSVALEY 121

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G FV  + RGDG +GEDV+A +R + +IP  LS  +P  +EVRGEV++    F AL  
Sbjct: 122 RNGLFVRGSTRGDGVTGEDVTANLRTVRSIPLRLSRPLP-FLEVRGEVFMPVAKFEALVR 180

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
                  K + NPRNAA+G LR+ NP   + R L+ FV  + +      +        ++
Sbjct: 181 AQELREEKLFKNPRNAAAGSLRQKNPKITSARGLDIFVFNIQRIEGATVESHLAGHALLK 240

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
            LGF V       +T     +    +   R +LPY IDG V KVD+F+ ++ LG  A+ P
Sbjct: 241 ELGFKVVAHT-ACDTLEKTETEITRIGESRGSLPYGIDGAVVKVDDFTARRMLGSTAKFP 299

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW ++ KF  ++  T LL IDI +GRTG LTP A LEPV + G+ +  A+LHNED+I+  
Sbjct: 300 RWAVAFKFPPEEKRTGLLSIDINVGRTGALTPTAVLEPVLLAGSTVARASLHNEDFIR-- 357

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     +DIR+GD V+V++AG++IP++V +     H   +P+  P+ CP C + V 
Sbjct: 358 ---------EKDIRIGDTVVVRKAGDIIPEIVSVA---EHGGGKPYRMPTACPSCGAPVA 405

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           R+      K  A  RC     C AQ L  L HF SRDA +IEG+G   ++          
Sbjct: 406 RE------KDEAVLRCQNP-DCPAQLLRHLIHFASRDAMDIEGMGPALVESLVGE----G 454

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            +R  AD++ L      +  K+E +   G  S  NL  +I   +   L R +++LG+R V
Sbjct: 455 LVRSIADVYDL---NAEAVAKLERM---GKKSAENLIAAIETSKRAGLARLLYALGVRQV 508

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G + A  +A  + S +        + +   D+   L  +  +G IIA+ +V F+      
Sbjct: 509 GQKAAGLIAARFGSME-------RLFSATEDE---LCAIDEIGGIIAENVVRFFALEDTA 558

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             VE L         R ++   + +  +  V TGTL K  R +A++ +  LG  V+  +S
Sbjct: 559 RLVERLRAAGVDLTAREQEVADTRLSGQIFVLTGTLSKYSREEAKKRIEALGGKVTGSVS 618

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +KT  ++ G+  GSKL+KA  LGV +++E  F  LL
Sbjct: 619 KKTSYVVAGEEAGSKLDKALALGVPVLDEAAFEQLL 654


>gi|304384418|ref|ZP_07366824.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973]
 gi|304334516|gb|EFM00803.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973]
          Length = 680

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 235/712 (33%), Positives = 375/712 (52%), Gaps = 59/712 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ R++L +       H+  YY  + P I D E+D +      +    P+    +DPN 
Sbjct: 22  IEQLRRDLHA-------HNYKYYVLNAPTIGDQEFDEMMHELQRLETLHPEW---DDPNS 71

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +++    +V H  P LSL   +N +D+ ++   + +     +D       E K
Sbjct: 72  PTQRVGSDLSTGFAQVKHRYPMLSLSNTYNEQDVAEWYESVRK---GLNDEDFEVCCEMK 128

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
            DG  I++ Y  G+ V    RGDG  G+DV+A +R I  IP VL     P   E+RGE+ 
Sbjct: 129 YDGLSISLTYVDGRIVQGVTRGDGVQGDDVTANVRTIHAIPLVLPGTGYPHEFEIRGEIL 188

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL-GKTSEIF 250
           +    F  LN E  A     +ANPRNAASG L+ L+P  + TR L+ +++ L G+T  + 
Sbjct: 189 MPWAVFEQLNKEREAAEEPLFANPRNAASGTLKSLDPALVATRRLDAYLYYLLGET--LP 246

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A G YE L      GF ++ G+++  T   I ++     S R  LP   DG+V KV+   
Sbjct: 247 ADGHYENLMAAASWGFKISAGMKKVRTLEEIYAFIRYWDSERKNLPVATDGIVLKVNSLR 306

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  A+SPRW I++KF  ++A TRL ++  Q+GRTG +TPVA +EPV + G  +  
Sbjct: 307 QQRALGFTAKSPRWAIAYKFKAERACTRLNEVTYQVGRTGAVTPVANMEPVQLAGTTVKR 366

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+NED+I+             D+ +GD V V++ GE+IPK+V +    R  DA P  F
Sbjct: 367 ATLNNEDFIRSF-----------DLHLGDYVYVEKGGEIIPKIVGVDTTRRLADALPVHF 415

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C + +VR      G+  AAH C   ++C  Q   R++HF++R A NIE LG + 
Sbjct: 416 ITVCPECGTSLVR----YEGE--AAHYCPNDVSCPPQVKGRIEHFIARKAMNIESLGPET 469

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D +++       IR  AD++ ++  Q        N  G  + S   +   I + +N+  
Sbjct: 470 VDEYYRRG----LIRNIADLYEIRTEQI-------NGDGSREKSAQRVVAGIAQSKNVPF 518

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F+LGIR VG   AR LA+ +       + I+ ++  + D+   L+++  VG  IA 
Sbjct: 519 ERVVFALGIRFVGETSARLLARRF-------KNIDALMEASPDE---LMQIEGVGMSIAN 568

Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++V +++NP N   VE L    +  ++   E   ++  +  K +V +G      R + + 
Sbjct: 569 SVVGYFRNPVNREIVERLRGYGLQMALSADEMTGMTDRLAGKTVVISGVFSHHSREEYKR 628

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            + Q G   +  +S KT  I+ GD+ G SKLEKA++LGV +++EE FL +++
Sbjct: 629 MIEQNGGKNTGSISSKTSFILAGDHMGPSKLEKAEKLGVPVIDEETFLSMIE 680


>gi|298369197|ref|ZP_06980515.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283200|gb|EFI24687.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314]
          Length = 830

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 238/687 (34%), Positives = 362/687 (52%), Gaps = 111/687 (16%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K L++L    +Y    YY    P + D+EYD L R  +A+    P+L     P+ P  ++
Sbjct: 9   KHLTALLNRYAYE---YYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEP 132
           GGE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EP
Sbjct: 63  GGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEP 122

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV
Sbjct: 123 KFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRGEV 182

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
            + K DF ALN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    
Sbjct: 183 LMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGG 241

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYK 305
           F A+   + L   + LGF + NG      F  I   +++Y +M+  R  LPY+IDG+V K
Sbjct: 242 FVAEEHIQELAYFQELGFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVK 299

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG
Sbjct: 300 VNSLAQQRELGFISRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGTVTPVARLQPVFVGG 359

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH--- 422
             +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R    
Sbjct: 360 VTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQE 408

Query: 423 -----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
                                        P  +P+  P+ CPIC S + R+     G+ V
Sbjct: 409 TAVAVSDGLKHQQDDLFAETPSANQTQSVPLHKPYRLPTHCPICHSEIERE----EGEAV 464

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-- 511
           A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++  
Sbjct: 465 A--RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRL 518

Query: 512 ---TLQRRQQTSTT-KIENILGFGDVSVTNLYDS-------------------INKRRNI 548
              TLQ+ ++T+     EN  G  +    +L +S                   I   +  
Sbjct: 519 DIPTLQKMKETADKGSSENENGDAETVSDDLSESNTQNGKKQPTKWAENILAGIEASKTP 578

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L RF+F+LGIRHVG   A++LA+ + S ++  +    I+A           +P +G ++
Sbjct: 579 ELARFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILAC----------LPDIGTVV 628

Query: 609 AQAIVEFY-QNPRNICAVEALLKEVSP 634
           A++I  F+ Q+ +     E L   V+P
Sbjct: 629 ARSIAHFFAQDAQQAMIDELLAAGVAP 655



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           +++  +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA
Sbjct: 746 DLNEAVAGKTFVLTGTLPILKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKA 805

Query: 702 QQLGVKI 708
             LGV +
Sbjct: 806 NALGVAV 812


>gi|160884627|ref|ZP_02065630.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483]
 gi|156110366|gb|EDO12111.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483]
          Length = 666

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 237/713 (33%), Positives = 374/713 (52%), Gaps = 63/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P  +
Sbjct: 4   KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P+  E+RGE+ +   
Sbjct: 117 SISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPDSFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N + + +R L+ +++ L     +   G Y
Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK L
Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429
            D I+GL           D+ +GD V V++ GE+IPK+  +       DA+ F       
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP C S++VR      G+  AAH C    AC  Q   +++HF+SR A NI+GLG +
Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F++       I+  AD++ L      +   I+ +   G+ S  NL   I + + + 
Sbjct: 454 TVDMFYR----LGLIKNTADLYKL------TADDIKGLDRMGEKSAENLITGIAQSKTVP 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IA
Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666
           Q+I+ ++ N  N   V A LKE    + R E+++S    ++  + +V +G      R + 
Sbjct: 554 QSILAYFANESNRELV-AKLKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEY 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +E + + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|296123087|ref|YP_003630865.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776]
 gi|296015427|gb|ADG68666.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776]
          Length = 707

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 238/732 (32%), Positives = 381/732 (52%), Gaps = 71/732 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S +QAR  L  L QEI  HD  YY  ++  I D EYD L  R   +  AFP+L  ++ P+
Sbjct: 18  SADQARHLLDKLRQEIRRHDRLYYVLAQNEISDLEYDRLMARLLEVEAAFPELTTADSPS 77

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-----FWQKKDDNSIF 127
               K+GGE      +V HS+P LS++ +++   L +F  ++ R      W+      + 
Sbjct: 78  ---QKVGGEPIEGFVQVAHSVPMLSIDNVYDESGLLEFGQKVSRRASEVGWK----GPME 130

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-------SL- 179
           +  E K+DG  +++ YE+GK + A  RGDG  G+DV+   + I  +P  L       SL 
Sbjct: 131 WLAEFKVDGVALSLIYEEGKLIRAVTRGDGRVGDDVTHNAKTIKGVPLFLEDGSSKKSLF 190

Query: 180 ---NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
              NIP ++EVRGE YI   DF  +    +  G +P+ N RNA +G L+ L+P     R 
Sbjct: 191 AESNIPRLLEVRGEAYIGNQDFAKVRAHQLERGEEPFKNSRNATAGSLKLLDPKLCAQRQ 250

Query: 236 LNFFVHGLGKTSEIFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR 292
           L FF H LG   E  A   K   + L+    +G P         +F   V+    M    
Sbjct: 251 LRFFAHSLGAIDEQEATRFKTHADYLELFYQVGLPTVPMTACHPSFEAAVAASPTMMEAL 310

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
           STL +++DGLV+KV+  +L+ +LG  ++SPRW++++K+   +A+T++L+I +Q+G+TG+L
Sbjct: 311 STLDFEVDGLVFKVNNLALRAELGMTSKSPRWIVAYKWERYEAATKVLNITVQVGKTGVL 370

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPVA LEPV I G  ++ ++LHN D I+ L            + VGD V+V++AG++IP 
Sbjct: 371 TPVADLEPVEIAGTTVSRSSLHNRDEIERL-----------GLGVGDTVIVEKAGKIIPH 419

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
           +V +  + R  +  P+ FP  CP C + V +D   + G  +   RC   + C A+  E L
Sbjct: 420 IVRVEEHLRPTNTAPYRFPETCPECSTIVEQD---EGGVYI---RCP-NINCPARFRESL 472

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532
           ++F SR A +IEGLG + ++    S      ++  +D++ L  ++               
Sbjct: 473 RYFASRQAMDIEGLGTKLVEQLVSSR----LVQSISDLYRLVDKRAELLELERLGEK--- 525

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHN 591
            SV +L   +   R   L R + +L IRHVG   A+ LA+ + S     AQ I  + A  
Sbjct: 526 -SVDSLLAGLEASRQQPLWRLLTALNIRHVGQRTAQILAERFGSMDRLSAQTIEELSA-- 582

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSSE--- 646
                     P VG++IAQ++  F+        +E  LK +  ++G    +K +++    
Sbjct: 583 ---------TPEVGEVIAQSVHHFFHTEYGSKLIEE-LKNLGLNLGTESEQKQIAATEGV 632

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K  V TGTL  + R + +E +   G   ++ +S+KT  ++ G+N GSKL KAQ LGV
Sbjct: 633 LSGKTFVVTGTLPSMGREEIEELIRLHGGHAASSVSKKTSFVVAGENAGSKLTKAQSLGV 692

Query: 707 KIMNEEQFLFLL 718
            ++NE +F+ L+
Sbjct: 693 PVINEAEFMKLI 704


>gi|328956034|ref|YP_004373367.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2]
 gi|328456358|gb|AEB07552.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2]
          Length = 752

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 250/733 (34%), Positives = 375/733 (51%), Gaps = 76/733 (10%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + + YH   YY    P I D+++D L R    I    PDL     P+    ++GG ++
Sbjct: 51  LRRLLDYHAYRYYALDAPEISDAQFDRLLRELQQIEVEHPDLI---TPDSYTQRVGGFVS 107

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                +TH     S++   ++++L  ++ R+          S  +T E KIDG  + + Y
Sbjct: 108 GQFAPITHMARMYSIDDAMDLDELDAWLDRVESALGA---GSAVYTCELKIDGLGVALTY 164

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--------NIPEIIEVRGEVYISK 195
             GKFV AA RGDG+ GEDVS  IR I  +P  LS         +  E IEVRGEVY+ K
Sbjct: 165 RSGKFVRAATRGDGYVGEDVSRNIRTIADVPMRLSTEAVERMGDDASEAIEVRGEVYMPK 224

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
             F  LN    A GR P+ANPRNAA+G LR+ +P    R  L+ F++ L  T+ +    Q
Sbjct: 225 GSFARLNATADAEGRPPFANPRNAAAGSLRQKDPAVTARRDLSTFMYALADTAPVHVTSQ 284

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +R  GF VN  V +  +   +  +  +  + R  L YDIDG+V KVD F LQ++
Sbjct: 285 LEFLDWLREAGFHVNPNVARCASPAQVHDFCADALAHRGGLDYDIDGVVVKVDSFELQER 344

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I+ KF  ++  T L +I IQ+GRTG+LTPVA+ +PV++ G+ I  ATLH
Sbjct: 345 LGFTARAPRWAIAFKFPPEERRTVLREIRIQVGRTGVLTPVAQFDPVSVAGSTIARATLH 404

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+            +D+RVGD ++V +AG+VIP+VV  +++ R   A+P+  P  C
Sbjct: 405 NIDEIE-----------RKDVRVGDTIIVHKAGDVIPEVVGPVLDLRADGARPYQMPDRC 453

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + VVR+     G++  A RC   L C AQ  ERL H+VSR   +++G+G + +D  
Sbjct: 454 PACGNPVVRE----PGQV--AIRCV-SLDCPAQLHERLLHWVSRGCMDVDGVGAELVDKL 506

Query: 495 FKSEDPAFSIRIPADIFTLQRRQ----------QTSTTKIENILG----FGDVSVTNLYD 540
                 A  +R  AD +TL   Q          Q +  K     G     G      + D
Sbjct: 507 VD----AGLVRDVADFYTLTSEQIAALDTGRVYQKTVAKKGVRAGDPILVGKTVADKIAD 562

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            +++ ++  L R +F+LGIRHVG  +   LA+++ S       I  +I  N ++   +  
Sbjct: 563 ELDRSKSRPLGRVLFALGIRHVGKSVGELLARHFGS-------IEALIEANEEE---IAG 612

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSI---GRHEKNVSSE----- 646
           +  +G  IA +   F+  P N+  +  L       +E S  +      E  VS E     
Sbjct: 613 IDGIGPKIASSTKMFFSVPENLQVLSRLREAGVGTQEGSGEVEAREAEESGVSVELARQR 672

Query: 647 -IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +E    V TG+L+   R +A   +  LGA V+  +S++T  +I G   GSKL KA  LG
Sbjct: 673 PLEGLTFVLTGSLEHRTRDQAAAALVALGARVAGSVSKRTSFVIAGPGAGSKLTKAASLG 732

Query: 706 VKIMNEEQFLFLL 718
           + +++E +   +L
Sbjct: 733 IAVLDERELERIL 745


>gi|139438245|ref|ZP_01771798.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC
           25986]
 gi|133776442|gb|EBA40262.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC
           25986]
          Length = 742

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 242/725 (33%), Positives = 368/725 (50%), Gaps = 68/725 (9%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+ YH   YY    P I D+ +D +      I  A+PDL     P+    ++GG ++
Sbjct: 40  LRHELDYHAYRYYMLDAPEITDAAFDKMLVELQEIEAAYPDLVT---PDSYTQRVGGYVS 96

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                VTH     S++   ++++L  ++ R           ++ +T E KIDG  + + Y
Sbjct: 97  EQFTPVTHMARMYSMDDAMDLDELDAWLQRTEDALGA---GNVTYTCELKIDGLGVALTY 153

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--------LNIPEIIEVRGEVYISK 195
           + G FV AA RGDG +GEDVS  +R I  +P  LS         +    IEVRGEVY+ K
Sbjct: 154 QNGTFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEPALTHMGADRERTIEVRGEVYMPK 213

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
             F+ LN+E  A GR P+ANPRNAA+G LR+ +P    R  L  F++ +  T  +    Q
Sbjct: 214 GSFVRLNEEADAEGRDPFANPRNAAAGSLRQKDPKVTARRDLATFIYAIADTDPLHVHSQ 273

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +R  GF VN  V +  T   +  +  +    R  L YDIDG+V KVD F  Q  
Sbjct: 274 REFLDWLRSAGFSVNPNVARCATPAEVHEFCAQALEHRGDLDYDIDGVVVKVDSFQQQLD 333

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I+ KF  ++  T L +I IQ+GRTG+LTPVA  +PV + G+ I  ATLH
Sbjct: 334 LGFTARAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEFDPVTVAGSTIARATLH 393

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+            +++R GD ++V +AG+VIP+VV  ++++R  D+  +  P  C
Sbjct: 394 NIDEIR-----------RKNVREGDTIIVHKAGDVIPEVVGPVLDKRPADSVDWQMPEVC 442

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S VV +     G++  A+RC   + C AQ  ERL H+VSR   +++GLG + +D  
Sbjct: 443 PVCGSPVVHE----DGEV--AYRCV-SIDCPAQLKERLLHWVSRGCMDVDGLGDEIVDKM 495

Query: 495 FKS---EDPA-FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS------INK 544
             +    D A F      DI  L   +  +++  +  +  GD     L  +      +NK
Sbjct: 496 IAAGLIHDVADFYQLTVDDIAGLDTGRTYASSNSKKGVKKGDPIPVGLKTAEKIIVELNK 555

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++  L R +F+LGIRHVG  +   +A+ +LS       I+ +I  + +D   +     +
Sbjct: 556 SKSQPLGRVLFALGIRHVGKSVGEVIAERFLS-------IDKLILASEED---IAECEGI 605

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK---EVSPSIGRH------------EKNVSSEIEN 649
           G  IA ++ +F   P N+  +E L +    +   +G              E   +  +  
Sbjct: 606 GPKIAASVKQFLAVPENLAVLERLRQAGLSLEVDLGAAHAQAAADAGVAGELADAQPLAG 665

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
              V TGTL    R +A   +  LGA VS  +S+KT  ++ G   GSKL KA+QLGV ++
Sbjct: 666 LTFVLTGTLVNRTRDEAGAALKVLGAKVSGSVSKKTSYLVAGPKAGSKLTKAEQLGVPVL 725

Query: 710 NEEQF 714
           +E+  
Sbjct: 726 DEDAL 730


>gi|166364069|ref|YP_001656342.1| DNA ligase [Microcystis aeruginosa NIES-843]
 gi|254781371|sp|B0JTW2|DNLJ_MICAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166086442|dbj|BAG01150.1| DNA ligase [Microcystis aeruginosa NIES-843]
          Length = 669

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 232/716 (32%), Positives = 375/716 (52%), Gaps = 53/716 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP+E   I+Q  ++L +  Q  SY    YY    P I DS YD L R  + I   +P L 
Sbjct: 3   IPLE---IQQRCQQLKTELQRASY---AYYVLDDPFIPDSVYDQLYRELEDIEKRYPQLI 56

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  ++G +++     V H+IP  SLE  +N+E+L K+  R  R+  +  D   
Sbjct: 57  ---TPDSPTQRVGDKISSQFVSVRHNIPLYSLENAFNLEELNKWGNRWQRYVNETQDTE- 112

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185
            +  E KIDG+ + + YE G  V    RGDG +GED++  +R I +IP  L++ N P I+
Sbjct: 113 -YVCELKIDGSALALTYENGFLVRGVTRGDGVTGEDITPNVRTIRSIPLRLNIDNPPAIV 171

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG 244
           EVRGE ++  + F  +N E        +ANPRNAA+G LR+L+P  +  R L FF + L 
Sbjct: 172 EVRGEAFLPLDTFDKINQEREEKRESLFANPRNAAAGTLRQLDPKIVDKRRLQFFAYTL- 230

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              +     Q++ L ++  +GF VN   +   +   +  YY + +  R  L Y  DG+V 
Sbjct: 231 HLDDNNITNQWQSLDRLESMGFLVNPHRQLCPSLQQVAQYYQDWQEKRHQLAYMTDGVVV 290

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+++   Q +LG   + PRW I+ K+  ++  T + DI I +GRTG +TP+A +EPV + 
Sbjct: 291 KINDLQRQNRLGFTQKFPRWAIALKYPAEEVPTVVKDIIINVGRTGAVTPMAVMEPVQVA 350

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  ATLHN D +  L           DIRVGD V++++AGE+IP+VV I+   R   
Sbjct: 351 GTTVQRATLHNSDRVAEL-----------DIRVGDTVIIRKAGEIIPEVVRILPELRPNH 399

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             PF  P+ CP CQS +VR +        A  RC    +C A     + H+ SRDA +I 
Sbjct: 400 TSPFQMPTNCPECQSPLVRPVGE------AVTRCVNS-SCPAILRGSVVHWASRDALDIR 452

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +    +       +   +D+++L++      T+I  +   G+ S  NL  ++ +
Sbjct: 453 GLGEKVVILLIEQG----LVTAISDLYSLEK------TEIAKLDRMGEKSALNLITAMAQ 502

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +N S  R ++ LGIR+VG+  A+ LA+ + + +  A          N     L  +  +
Sbjct: 503 SKNQSWSRVLYGLGIRYVGSVNAKILAESFRTVEELA----------NASVTDLASIYGI 552

Query: 605 GDIIAQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G+ IAQ++ ++++   N   V  L    +  +         + +  K  V TGTL  ++R
Sbjct: 553 GEEIAQSVYDWFRIEANRDLVAKLQAAGLQFAAAAKTTTTKATLAGKTFVITGTLPTLKR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E + + G  V+  +S+KTD +++G+  GSKLEKA +LG+  + E Q L L++
Sbjct: 613 EEAKELIEKAGGKVTGSVSKKTDYLVLGEAAGSKLEKALELGITQLTEAQLLELIK 668


>gi|325696052|gb|EGD37943.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK160]
          Length = 652

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 232/698 (33%), Positives = 370/698 (53%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  RI     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRI-----RKEFPQVSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++     +++ +  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            +L K+  LGF VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++L
Sbjct: 229 AVLNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +P   PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSLGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LG
Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A VS  +S+KTD+++ G + GSKL KAQ+LG++I NE+
Sbjct: 610 ANVSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRNED 647


>gi|332362528|gb|EGJ40328.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1056]
          Length = 652

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 233/695 (33%), Positives = 367/695 (52%), Gaps = 55/695 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLNKIG 79
           +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +++G
Sbjct: 5   MSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTHRVG 60

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G++     K  H  P  SL+  ++ E+L  F  R+     +K+   + +  E KIDG  I
Sbjct: 61  GKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRV-----RKEFPQVSYLCELKIDGLSI 115

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K  F 
Sbjct: 116 SLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKASFD 173

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
           A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q E+L
Sbjct: 174 AVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQANSQEEVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            K+  LGF VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG  
Sbjct: 232 NKLADLGFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +P   PS CP C 
Sbjct: 352 I-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCPSCD 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ- 451

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                  +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F LG
Sbjct: 452 ------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VEFYQ 617
           IRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   F Q
Sbjct: 503 IRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSIGTVIAQSLHTYFEQ 552

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
               I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA V
Sbjct: 553 EGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGANV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           S  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 613 SGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647


>gi|325956253|ref|YP_004286863.1| DNA ligase [Lactobacillus acidophilus 30SC]
 gi|325332818|gb|ADZ06726.1| DNA ligase [Lactobacillus acidophilus 30SC]
          Length = 667

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 223/712 (31%), Positives = 388/712 (54%), Gaps = 60/712 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++++A+KE +SL  +++   D YY    P + D+ YD    R   +   FP++     P
Sbjct: 4   ITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG+++    KV H IP LS+  +++ E+L++F  R+    QK   + + + +E
Sbjct: 61  DSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRM----QKLVGHPVEYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GK V A+ RG+G+ GEDV+A    I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN+E    G   +ANPRNAA+G LR+L+P     R L+ F++      E  
Sbjct: 175 YMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEGI 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++ +++M  LGF  N   R+  T   I  + +E  + R++L Y IDG+V K+D+ +
Sbjct: 235 T-SQHQAIERMHELGFHTNETGRKLATLDEIFDFIDEYTAKRNSLTYGIDGIVLKIDDLN 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +  
Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D++P+  
Sbjct: 354 ASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEPYKI 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG + 
Sbjct: 403 PDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I+  ++ S+
Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAELDHFKEKSINNLLTAIDNSKSNSV 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  I  LGI HVGA+ AR +A+ +       + ++ I+A    D  S   +  +G  IA+
Sbjct: 506 ELLITGLGIDHVGAKAARLIAQKF-------KNLSKIMAQGVQDIAS---IDTIGMTIAE 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQKIQR 663
           ++  ++  P     V+ L++E+  S      +G  E+    +  ++K +V TG L+   R
Sbjct: 556 SMTTYFAQPE----VQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTR 611

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +  + +  LGA V+  +S+KT+ +I G + GSK  KA+QLG+ ++ EE+ +
Sbjct: 612 SEFTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAI 663


>gi|255533202|ref|YP_003093574.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366]
 gi|255346186|gb|ACU05512.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366]
          Length = 670

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 222/714 (31%), Positives = 381/714 (53%), Gaps = 50/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + +  + +L +E++ H   YY  + P I D  +D        +  A+P+ A   DP
Sbjct: 1   MSGSEVKTNMDALVKELNQHSYNYYVLAMPTIADYTFDKKLEELAQLELAYPEFA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  K+GG++      V H  P LSL   +N +DLR F  RI    +K    S  +  E
Sbjct: 58  NSPTRKVGGDITKIFTTVPHKWPMLSLGNTYNEQDLRDFDERI----KKAIGESFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
            K DG  I++ Y+  K V A  RGDG  G+DV+A ++ I TIP  L   ++P + E+RGE
Sbjct: 114 LKFDGLSISLTYDGSKLVRAVTRGDGAKGDDVTANVKTINTIPHQLKEGDVPPLFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           +++ +  F  LN E   +G   YANPRN A+G ++  +  ++  R L+ F++ L  T + 
Sbjct: 174 IFMHRAAFERLNKEREELGEVQYANPRNFAAGTVKMQDSKEVAKRPLDCFLYSLN-TDKN 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           + K  +E LQ ++  GF V    +  N+   + S+    ++ R  L YDIDG+V KV+ +
Sbjct: 233 YFKTHWESLQALKRWGFNVCEHTKLTNSIEDVRSFIKHWENERFKLSYDIDGIVIKVNSY 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q++LG  A+SPRW IS+K+  ++  T L  +  Q+GRTG +TPVA L+PV + G  + 
Sbjct: 293 AQQQELGFTAKSPRWAISYKYKAQEVETILDKVTYQVGRTGAVTPVANLKPVQLAGTTVK 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + I+ L           D+  GD V V++ GE+IPK++++ +++R   A    
Sbjct: 353 RATLHNANEIERL-----------DLHEGDSVFVEKGGEIIPKIMNVNLDKRKAGALKII 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           +P+ CP C + ++R    K G++  A  C    AC  Q + +++HF+SR A NI+GLG +
Sbjct: 402 YPTVCPECATPLIR----KEGEV--AFYCPNDEACPPQIIGKIQHFISRKAMNIDGLGDE 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++ F++       I   +D++TL  + +    +++ +  FG+ S+ N+   I   + + 
Sbjct: 456 TIETFYQRG----LIAHISDLYTLHEKAE----ELKTLERFGEKSIENMLHGIELSKQMP 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            E+ +F LGIR+VG  +A+ L          A  + N+    +     L  +  +G  IA
Sbjct: 508 FEKVLFGLGIRYVGETVAKKL----------AYGVKNVDKLASASLEELTAIDEIGQRIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKA 666
           ++I+E++    ++  +  LLK  +      E  +   S ++  K  V +G  +   R + 
Sbjct: 558 ESIIEYFGKAEHLHQIN-LLKSYNLKFEVAENEITLQSDKLTGKTFVISGVFENYSREEL 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ +   G  + + +S K + ++ GDN G SKLEKA++L V ++++E  L LL+
Sbjct: 617 KDMIESNGGKILSGISAKLNYLVAGDNMGPSKLEKAKKLNVPLISQEDLLELLK 670


>gi|298492390|ref|YP_003722567.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708]
 gi|298234308|gb|ADI65444.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708]
          Length = 684

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 239/724 (33%), Positives = 383/724 (52%), Gaps = 58/724 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++  S  Q  +EL  L Q+ SY    YY    P++ D  YD L R    +   +P L   
Sbjct: 2   MQMTSEAQLVRELRLLLQQASY---AYYVLDAPVMEDMVYDRLYRELQELETQYPYLV-- 56

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSIF 127
             P+ P  ++G         V H+IP  SLE  +N+E+L+ +  R  R    +     + 
Sbjct: 57  -TPDSPTQRVGERPATHFTSVRHNIPLYSLENAFNVEELQGWDQRWRRHLMAQYYPVEVD 115

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPE 183
           +  E KIDG  + + Y+ G  V  A RGDG  GED++  +R I +IP  L+     NI E
Sbjct: 116 YVAELKIDGAALALTYQNGILVRGATRGDGVMGEDITQNVRTIRSIPLRLNFDGLENI-E 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF--- 239
            +EVRGEV++    F  +N++    G + +ANPRNA +G LR+L+   +  R L+FF   
Sbjct: 175 KVEVRGEVFLPLEVFKQINEKRQKAGEQLFANPRNAVAGTLRQLDSRIVAQRQLDFFAYT 234

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           VH  G      A  Q+E L+ ++ LGF V+   R  ++   +  YY    + R   PY  
Sbjct: 235 VHIPGMDDASIANTQWEALELLQRLGFRVDTNHRLCHSIREVAEYYEYWDTERLNSPYMT 294

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V K++ F LQ+QLG   + PRW I+ K+A +QA TR+ +I I +GRTG LTP+A + 
Sbjct: 295 DGVVVKLNTFKLQEQLGFTQKFPRWAIALKYAAEQAPTRVNNITINVGRTGALTPLAEMR 354

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ ATLHN D I+ L           DIR+GD V+V++AG++IP+VV +I  
Sbjct: 355 PVQLAGTTVSRATLHNSDRIQQL-----------DIRIGDTVIVRKAGDIIPEVVRVIKE 403

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R  D  PF  PS CPIC   VVR+    +G+  A  RC    +C+A     ++H+VSRD
Sbjct: 404 LRPSDTAPFIMPSHCPICGQPVVRE----SGE--AVTRCVSA-SCAAILKGEIEHWVSRD 456

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I+G+G++ +      E    S+   +D++ L + +  +  ++      G  S   L 
Sbjct: 457 ALDIKGMGEKLVHQLVDKE-LVLSV---SDLYKLIKEELCALERM------GQKSAQKLV 506

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           ++I + +N    R ++ LGIRHVG+  A+ L + + + +  A       A  +D    + 
Sbjct: 507 NAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTEKFTTVEQLAA------AKQSD----IE 556

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFT 655
            V  +G  IAQ++ ++++ P N   +  L    L+  + +  +    ++  +  K  V T
Sbjct: 557 GVYGIGAEIAQSVYQWFRTPANQTLISRLQDIGLQLANTAETKPVGEINPNLAGKIFVVT 616

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  ++R +A+  + + G  V+  +SRKTD ++VG + G K++KAQ LG+  + E Q L
Sbjct: 617 GTLPTLKRDEAKVLIQKAGGKVTDSVSRKTDFLVVGADAGFKVKKAQSLGITQLTETQLL 676

Query: 716 FLLQ 719
            +L+
Sbjct: 677 KMLE 680


>gi|94971682|ref|YP_593730.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis
           Ellin345]
 gi|122986011|sp|Q1IHJ4|DNLJ_ACIBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94553732|gb|ABF43656.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis
           Ellin345]
          Length = 673

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 239/713 (33%), Positives = 364/713 (51%), Gaps = 63/713 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K+   L +++ YH+  YY    P I D++YD +     A+    P+L     P+ P  ++
Sbjct: 9   KQAEDLREKLRYHEHRYYVLDDPEISDADYDVMMNELKALEAKHPELL---TPDSPTQRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG+      KV HS P LSL+  +N E+LR +  R+     K +   I +  E K+DG  
Sbjct: 66  GGKPREGFVKVAHSAPMLSLDNAYNEEELRDWARRVEELSGKAE---IEYECELKLDGLS 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS------LNIPEIIEVRGEVY 192
           + +RY+  +FV A  RGDG  GEDV+  +R + ++P  +S       ++    EVRGEV 
Sbjct: 123 MALRYQDARFVLAVTRGDGSIGEDVTLNLRTVKSVPLGVSSATLKKTHMLGDFEVRGEVI 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
                F  +N++    G   +ANPRNAA+G +R L P +IT  R L+F+ + L     + 
Sbjct: 183 FPTKSFEKMNEDREKQGLAKFANPRNAAAGAVRVLEP-NITAQRRLDFYAYFLLVDGRVH 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E L  +  LGF VN+      +   ++ + ++ +  R  LPY+IDG+V KV+  +
Sbjct: 242 IDRQSEALDTLEKLGFKVNSNRAVFKSIDDVLKFIHKKEEDREKLPYEIDGVVIKVNSTA 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L ++LG   ++PRW I++K+A + A T++ DI +Q+GRTG LTPVA L+PV IGG  ++ 
Sbjct: 302 LWQRLGFTGKAPRWAIAYKYAARAAVTQVEDILVQVGRTGKLTPVAALKPVPIGGTTVSR 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFS 429
           ATLHN D I  L            + +GD V V+R G+VIPKVV +I ++ HP   + F 
Sbjct: 362 ATLHNMDEIDRL-----------GLLIGDWVQVERGGDVIPKVVKVIDDKDHPRGKKKFK 410

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   VVR          A HRC     C A+  E + HF SR   NIEG+G  
Sbjct: 411 MPERCPECGGHVVRTEGE------ADHRCVNA-NCPAKLRESILHFASRGVMNIEGMGDS 463

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++      D    ++  ADI+ L   +  S  ++      G  S  N+ D I   + + 
Sbjct: 464 LVNQLV---DRGL-VKNVADIYELDEEKLLSLERM------GKKSAQNILDEIKGTKKLP 513

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER I+ LGIR VG   A+ LA+++ S     +     +               VG  IA
Sbjct: 514 LERVIYGLGIRMVGERTAQFLAEHFGSLDGVMKATEEELLEVE----------EVGPRIA 563

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHK 665
           Q+I EF+  P N   V+ L      + G   K V  E    +  +  V TG+L    R +
Sbjct: 564 QSIHEFFAEPSNRELVKRL-----EAAGLQFKGVKKERGTALAGQTFVLTGSLPTYSRDE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A++ +   G  VS  +S+KT+ ++ G+  GSKL+KA+ LGV +++E+    LL
Sbjct: 619 AKKLIEDAGGKVSGSVSKKTNYVVAGEEAGSKLDKARDLGVAVIDEDALKKLL 671


>gi|327461089|gb|EGF07422.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1057]
          Length = 652

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 233/698 (33%), Positives = 370/698 (53%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  RI     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRI-----RKEFPQVSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQADSQE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++L
Sbjct: 229 EVLNKLAALGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +P   PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F Q    I   E   + V+      +    + +    +V TG LQK+ R++A+E +  LG
Sbjct: 550 FEQEGSQILLAELQEEGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 610 ANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647


>gi|317507336|ref|ZP_07965075.1| DNA ligase [Segniliparus rugosus ATCC BAA-974]
 gi|316254381|gb|EFV13712.1| DNA ligase [Segniliparus rugosus ATCC BAA-974]
          Length = 712

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 236/707 (33%), Positives = 358/707 (50%), Gaps = 52/707 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++  H   YY    P + D+E+DAL R   A+    P+LA +  P   +   G    
Sbjct: 18  LADQVKEHQFRYYVLDSPTVTDAEFDALLRELQALEDEHPELASASSPTKLVGGAG--FT 75

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               +V H  P LSL+ ++N ED   +  R+     +  +  I F  E KIDG  I++ Y
Sbjct: 76  TDFAEVGHVEPMLSLDNVFNEEDFLAWAERV----AQGAEQPINFDCELKIDGLGISLVY 131

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEVYISKNDFL 199
           E+G+   AA RGDG +GEDV+  +R I  +P  LSL      PE++EVRGEV+    DF 
Sbjct: 132 ERGRLARAATRGDGRTGEDVTLNVRTIADVPHELSLAAGEEPPELLEVRGEVFFKLKDFE 191

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
           ALN  ++A G+ P+ANPRN+A+G LR+ NP     R L    HGLG T       + E  
Sbjct: 192 ALNASLVAEGKAPFANPRNSAAGSLRQKNPAITAKRKLAMLCHGLGATGGWSPATRSEAY 251

Query: 259 QKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           QK++  G PV   N  +       G + ++ E    R  + YDIDGLV KV+E SL  +L
Sbjct: 252 QKLKDWGLPVSPYNTTLASPEAVLGHIRHWGER---RHEVEYDIDGLVVKVEEMSLYARL 308

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I++K+  ++  T+LLDI + +GRTG +TP A +EPV + G+ +  ATLHN
Sbjct: 309 GNTSRAPRWAIAYKYPPQEVQTKLLDIRVNVGRTGRVTPFAFMEPVLVAGSTVGLATLHN 368

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
                    + +V R G  + +GD V++++AG+VIP+V+  +V  R    + F  P+ CP
Sbjct: 369 ---------ASEVARKG--VLIGDTVVLRKAGDVIPEVLGPVVALRDGSEREFVMPAQCP 417

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C +    +L P     V   RC     C AQ  ER+ H   R AF+IE LG +      
Sbjct: 418 ECGA----ELAPAKEADVDI-RCPNARTCPAQLRERVFHVAGRGAFDIEALGYEAAVDLL 472

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGDVSVTN--LYDSINKRRNISLE 551
           K      +I    D+F L   +   T    N  G   G +S     L  ++ + ++  L 
Sbjct: 473 KHN----AIEDEGDLFDLDEERLLKTELFVNTSGKNAGQLSANGRKLLQNLEQAKSRDLW 528

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   AR+LA  + S       ++ +   + +   +L  V  VG  IA +
Sbjct: 529 RVLVALSIRHVGPTAARALATRFGS-------VDAVFGADQE---ALAEVDGVGPTIAAS 578

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + E+++   +   VE   +    ++    +     +    +V TG+L    R   QE + 
Sbjct: 579 VREWFEVDWHRSIVE-RWRAAGVTMAEDREQSPQTLAGLTIVVTGSLDGFTRESVQEAII 637

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             G   S  +S+KT  ++ G+  GSK +KA+QLGV I++E  F+ LL
Sbjct: 638 AHGGKASGSVSKKTSYVVAGEGGGSKRDKAEQLGVPIIDEAAFVQLL 684


>gi|306833158|ref|ZP_07466288.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338]
 gi|304424732|gb|EFM27868.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338]
          Length = 652

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 233/703 (33%), Positives = 370/703 (52%), Gaps = 67/703 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRV-----KAEFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L+   P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLAQ--PLNITVRGEAYLPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255
           F  +N+E    G+  +ANPRNAA+G LR+LN   + +     F    +  TS      Q 
Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLYQEVASTS---MTTQN 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++L
Sbjct: 229 DVLEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P  CP
Sbjct: 349 VDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRGKQV-PMPIPENCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   F
Sbjct: 397 SCGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLER 552
           K+E     +   ADI+ L          +E++L   GF + S   LY++I   +  S ++
Sbjct: 450 KAE----LVHDVADIYQL---------TVEDLLSLDGFKEKSAEKLYNAIQVSKENSADK 496

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRHVGA+ +R L + +       + I+ ++A + D   S+  +  +G +IA+++
Sbjct: 497 LLFGLGIRHVGAKASRQLLEVF-------ETIDQLVAADAD---SIASIDGLGTVIAKSL 546

Query: 613 VEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQE 668
             ++       A E L  L+    +     K VS  +++    +V TG L+++ R++A+E
Sbjct: 547 RSYFAKEE---ATELLHELENAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKE 603

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            +  LGA V+  +S+KTDI++ G + GSKL KAQ LG+ + +E
Sbjct: 604 KLQDLGAKVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDE 646


>gi|299145622|ref|ZP_07038690.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23]
 gi|298516113|gb|EFI39994.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23]
          Length = 666

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 237/713 (33%), Positives = 373/713 (52%), Gaps = 63/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P  +
Sbjct: 4   KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ +   
Sbjct: 117 SISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N + + +R L+ +++ L     +   G Y
Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK L
Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429
            D I+GL           D+ +GD V V++ GE+IPK+  +       DA+ F       
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP C S++VR      G+  AAH C    AC  Q   +++HF+SR A NI+GLG +
Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F++       IR  AD++ L      +   I+ +   G+ S  N+   I + + + 
Sbjct: 454 TVDMFYR----LGLIRNTADLYKL------TADDIKGLDRMGEKSAENIVTGIAQSKTVP 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IA
Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666
           Q+I+ ++ N  N   V A LKE    + R E+++S    ++  + +V +G      R + 
Sbjct: 554 QSILAYFANESNRELV-AKLKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEY 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +E + + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|260102794|ref|ZP_05753031.1| DNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260083398|gb|EEW67518.1| DNA ligase [Lactobacillus helveticus DSM 20075]
          Length = 689

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 229/721 (31%), Positives = 391/721 (54%), Gaps = 63/721 (8%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q + +  +++++A+KE +SL  ++    D YY    P + D+ YD    R   +  AFP+
Sbjct: 18  QEVKMAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPE 77

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           +     P+    ++GGE++    KV H IP LS+  +++ ++L++F  R+    QK   +
Sbjct: 78  IVT---PDSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRM----QKLVGH 130

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + + +E KIDG  +++ Y+ GK V A+ RG+G+ GEDV+A  R I  IP+VL    P  
Sbjct: 131 PVEYNVELKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPE--PLT 188

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG- 242
           IEVRGE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++  
Sbjct: 189 IEVRGECYMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTW 248

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +    EI +  Q++ +++M  LGF  N   R+      +  + +E  + R++L Y IDG+
Sbjct: 249 VNPPREITS--QHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGI 306

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD+ SL++QLG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV 
Sbjct: 307 VLKVDDLSLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQ 366

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+LHN DY+             + +R+GD V + +AG++IP++ ++++++R 
Sbjct: 367 LAGTTVARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLSKRP 415

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D+ P+  P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A N
Sbjct: 416 ADSVPYEIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMN 468

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I GLG + +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I
Sbjct: 469 IAGLGPKIVKQLI-AKDLVHNV---ADLYHL------TEDDLAQLDHFKEKSINNLLTAI 518

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           +  +  S+E  I  LGI HVGA+ AR +A+ +       + +  I++    D  S   + 
Sbjct: 519 DNSKKNSVELLITGLGIDHVGAKAARLIAQKF-------KNLEKIMSLGVQDIAS---ID 568

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVF 654
            +G   A+++  ++  P      + L++E+  S      +G  E   + +   ++K +V 
Sbjct: 569 TIGMTTAESMTTYFAQPE----AQKLIEELRESGLNMDYLGADEPEEAPDNPFKDKTVVL 624

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG L+   R +  + +  LGA V+  +S KTD +I G + GSK  KA+QLGV ++ EE+ 
Sbjct: 625 TGKLEHYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEA 684

Query: 715 L 715
           +
Sbjct: 685 I 685


>gi|327183069|gb|AEA31516.1| DNA ligase [Lactobacillus amylovorus GRL 1118]
          Length = 667

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 223/712 (31%), Positives = 388/712 (54%), Gaps = 60/712 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++++A+KE +SL  +++   D YY    P + D+ YD    R   +   FP++     P
Sbjct: 4   ITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG+++    KV H IP LS+  +++ E+L++F  R+    QK   + + + +E
Sbjct: 61  DSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRM----QKLVGHPVEYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GK V A+ RG+G+ GEDV+A    I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN+E    G   +ANPRNAA+G LR+L+P     R L+ F++      E  
Sbjct: 175 YMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEGI 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++ +++M  LGF  N   R+  T   I  + +E  + R++L Y IDG+V K+D+ +
Sbjct: 235 T-SQHQAIERMHELGFHTNETDRKLATLDEIFDFIDEYTAKRNSLTYGIDGIVLKIDDLN 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +  
Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D++P+  
Sbjct: 354 ASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEPYKI 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG + 
Sbjct: 403 PDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I+  ++ S+
Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAELDHFKEKSINNLLTAIDNSKSNSV 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  I  LGI HVGA+ AR +A+ +       + ++ I+A    D  S   +  +G  IA+
Sbjct: 506 ELLITGLGIDHVGAKAARLIAQKF-------KNLSKIMAQGVQDIAS---IDTIGMTIAE 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQKIQR 663
           ++  ++  P     V+ L++E+  S      +G  E+    +  ++K +V TG L+   R
Sbjct: 556 SMTTYFAQPE----VQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTR 611

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +  + +  LGA V+  +S+KT+ +I G + GSK  KA+QLG+ ++ EE+ +
Sbjct: 612 SEFTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAI 663


>gi|11513386|pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
           Filiformis
 gi|11513387|pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
           Filiformis
          Length = 667

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 248/719 (34%), Positives = 395/719 (54%), Gaps = 69/719 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+AR+ ++ L   I YH+  YY  + P I D+EYD L R    +   FP+    + P
Sbjct: 1   MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEF---KSP 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G       F+ V H     SL+  +  E++  F  R+    +++ +    +T+
Sbjct: 58  DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERL----EREAEAPSLYTV 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V++   GDG  GE+V+  +  IPTIPR L   +P+ +EVRGE
Sbjct: 114 EHKVDGLSV-LYYEEG--VWSTGSGDGEVGEEVTQNLLTIPTIPRRLK-GVPDRLEVRGE 169

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLG-KT 246
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P    +      F+  GLG   
Sbjct: 170 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGL 229

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E   K QYE+L  ++  GFPV +   +A    G+   Y    + R  LP++ DG+V K+
Sbjct: 230 EESGLKSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKL 289

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +L  +LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV I G+
Sbjct: 290 DDLTLWGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGS 349

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R    +
Sbjct: 350 EVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGKER 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  +P  CP C  R+V     K GK+   HRC   L C A++ E ++H+ SR A +IEGL
Sbjct: 399 PIRWPEACPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIEGL 449

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSIN 543
           G++ ++   +       +R  AD++ L++         E++LG    G+ S  NL   I 
Sbjct: 450 GEKLIERLLEK----GLVRDVADLYHLRK---------EDLLGLERMGEKSAQNLLRQIE 496

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + ++  LER +++LG+  VG  +AR+LA+ + +     +     +    +          
Sbjct: 497 ESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEE---------- 546

Query: 604 VGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           VG++ A+AI+E  ++P  R++      LKE   S+   E+ VS  +     V TG L + 
Sbjct: 547 VGELTARAILETLKDPAFRDLV---RRLKEAGVSMESKEE-VSDLLSGLTFVLTGELSR- 601

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R + +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV ++ EE+F   L++
Sbjct: 602 PREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKE 660


>gi|313890529|ref|ZP_07824157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121046|gb|EFR44157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026]
          Length = 652

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 223/685 (32%), Positives = 372/685 (54%), Gaps = 53/685 (7%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D EYD L     A+   +P+L + + P      +GG +     K  H  P
Sbjct: 19  YYTNDNPTVSDQEYDKLYHELLALETEYPELIQKDSPT---QGVGGLILSGFEKYQHPYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     K +  ++ +  E KIDG  I++ Y++GK V  A R
Sbjct: 76  LYSLQDAFSQEELFAFDRRV-----KLEFPTVTYVAELKIDGLSISLDYKEGKLVTGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           G+G  GE+++  I+ I  IP+  +L  P  I VRGE Y+SK+ F  +N E    G   +A
Sbjct: 131 GNGSVGENITENIKKIKDIPQ--TLKDPIDITVRGEAYMSKHSFQMINIERQESGEAEFA 188

Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+ + ++ R L  F++     S+     Q  +L K+  LGF VN    
Sbjct: 189 NPRNAAAGTLRQLDTSIVSKRNLASFLYQEASPSQEIT--QVAVLDKLSHLGFSVNKHRM 246

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
            +++   I  +  E++  R+ LPYDIDG+V KVD+ ++Q++LG   ++PRW I++KF  +
Sbjct: 247 VSSSMEDIWQFIQEIEPDRAQLPYDIDGIVIKVDDLAMQEELGFTVKAPRWAIAYKFPAE 306

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +    +L +D  IGRTG++TP A L PV + G  ++ ATLHN DYI             +
Sbjct: 307 EKEAEILSVDWTIGRTGVVTPTANLRPVQLAGTTVSRATLHNVDYI-----------AQK 355

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR+GD V+V +AG++IP V+ ++ ++R  + +P   P+ CP CQS +    +       
Sbjct: 356 DIRIGDTVIVYKAGDIIPAVLRVVTDKRK-NQEPILIPNLCPSCQSSLTHLEDE------ 408

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
            A RC   L C +     L+HF SR+A NI GLG   ++  F+++     I   ADI+ L
Sbjct: 409 VALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAVVEKLFRAQ----LIHDVADIYKL 463

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            R Q  S      + G  + S   L  +I   +  S E+ +F LGIRHVG + +R L + 
Sbjct: 464 SREQLLS------LEGIKEKSADKLLSAIADSKEKSAEKLLFGLGIRHVGEKASRLLLET 517

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL-LKEV 632
           +        +I  ++  N D   ++ ++  +G +IA ++ +++  P     +  L  + +
Sbjct: 518 F-------GDIETLMQSNED---AIAQIDGLGHVIANSLAQYFAKPEAQQLISELKCQGL 567

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           + +      + S+ +    +V TG L+++ R +A+  + +LGA V++ +S+KTD+++ G 
Sbjct: 568 NLTYLGQRVDQSAPLYGLTVVLTGKLEEMGRSEAKTKLEKLGAKVTSSVSKKTDVVLAGS 627

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFL 717
           + GSKL+KA+QLG+++ +E+  L L
Sbjct: 628 DSGSKLDKARQLGIRVEDEQWLLDL 652


>gi|222481049|ref|YP_002567286.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
 gi|254781342|sp|B9LU22|DNLJ_HALLT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222453951|gb|ACM58216.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
          Length = 710

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 238/727 (32%), Positives = 381/727 (52%), Gaps = 65/727 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+ ALS ++A ++ S L   I  HD  YY  + P+I D  YD L  R   + + F DL  
Sbjct: 26  PVGALSEDEATEQASLLRAAIREHDHRYYLEADPLIPDETYDRLFTRLQELENEF-DLPT 84

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNS 125
               N P  ++GGE    L  V H  P  S++     + +R+F  R+ +    +  D ++
Sbjct: 85  Q---NSPTRRVGGEPLDELATVEHVAPMRSIDNATEADAVREFDGRVRKGLDAEGFDSDA 141

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  EPK DG  + + YE G++V AA RGDG +G+DV+  +R I ++P  L  + P  +
Sbjct: 142 VEYVCEPKFDGLSVEVIYEDGEYVRAATRGDGTAGDDVTEQVRTIRSVPGKLRGDPPSRL 201

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN-FFVHGL 243
            VRGE Y+ ++ F A N+ ++  G +P+ANPRNAA+G LR+L+P+ +  R L+ FF   L
Sbjct: 202 AVRGEAYMPRDAFKAYNEALMERGEEPFANPRNAAAGTLRQLDPSVVAERPLDIFFFDVL 261

Query: 244 GKTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           G  ++  A+G         +E        G    N V + +   G + Y + + + R  L
Sbjct: 262 GWEND--AEGDSPNRPATHWEEFDTFDAFGLRRANRVERVDDIEGALDYRDRLMADREDL 319

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            + IDG+V  VD+ + ++ LG  AR+PRW  ++KF  + A+T +  I +Q+GRTG LTPV
Sbjct: 320 NFAIDGVVIAVDDRANREALGATARAPRWAFAYKFPPRTATTIVEGITVQVGRTGRLTPV 379

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A L+P+++GG  ++ ATLHN   I+ L            + VGD V + RAG+VIP V +
Sbjct: 380 AELDPIDVGGVTVSRATLHNPAEIEAL-----------GVNVGDCVRIYRAGDVIPYVPE 428

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           ++  E+  +   + FP  CPIC + V RD     G L     CTGGL C AQ    ++H+
Sbjct: 429 VV--EKRSEGT-YVFPETCPICDAPVERD-----GPLAF---CTGGLVCPAQLERAVEHW 477

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
             RDA +IEGLG +++            +R    + +L      +   +  + G+G+ S 
Sbjct: 478 ARRDALDIEGLGPERVQ----------QLREAGLVESLPDLYDLAVDDLAALEGWGETSA 527

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL   +   R+  L+ F+  LGI  VGA  AR+LA ++        +++ I+  + D  
Sbjct: 528 ENLIAELAATRDPPLDDFLAGLGIPDVGATTARALAAHF-------GDLDAILDADED-- 578

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVF 654
            +L  V  VG  +A++I  F  N  N  A++ L +  V P     +      ++    VF
Sbjct: 579 -ALRAVDDVGPEVAESIRTFLDNAENRVAIDGLRERGVDPE--SVDVETGDALDGLTFVF 635

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ 713
           TG+L    R +AQ +V   GA  ++ +S  TD ++ G++PG SK + A   GV +++EE+
Sbjct: 636 TGSLSTT-RGEAQAHVEAHGADATSSVSGNTDYLVAGESPGRSKRDDADAEGVPVVDEEE 694

Query: 714 FLFLLQQ 720
           F  LL +
Sbjct: 695 FAGLLAE 701


>gi|325283108|ref|YP_004255649.1| DNA ligase [Deinococcus proteolyticus MRP]
 gi|324314917|gb|ADY26032.1| DNA ligase [Deinococcus proteolyticus MRP]
          Length = 676

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 224/703 (31%), Positives = 368/703 (52%), Gaps = 54/703 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  YY+   P I D EYDAL R+  A     P+ A +     P  ++GG ++
Sbjct: 16  LRAELERHNRAYYEQDNPEIPDDEYDALARQVRAAEAEHPEWAAA---GSPTERVGGAVS 72

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITIR 142
            +   V H  P  SL+  ++  ++  +  R+ R      D+  F FT E KIDG  + + 
Sbjct: 73  AAFEPVDHPTPMTSLDNAFDDSEMAGWQERLARALNLPPDHGDFAFTGELKIDGLSVNLY 132

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           Y  G+  +AA RG+G +GE V+A +  IP IP+ L   +   +EVRGEVY+++ DF A N
Sbjct: 133 YRDGELQWAATRGNGRTGEKVTAQLLTIPGIPQQLP-GLSGELEVRGEVYLAREDFAAYN 191

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKGQYEMLQK 260
                +G     NPRN A+G LR+ +P ++TR   L    + LG+   + A+ Q+E+L+ 
Sbjct: 192 ARAEELGEPLLKNPRNGAAGALRQKDP-ELTRRRGLKAIFYSLGRRDGVPARTQWEVLEW 250

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +   GFP +   R   +    ++Y+ EM + R+ LP+D DG V K+D   +Q++ G  +R
Sbjct: 251 LAAQGFPTSPYSRPLGSLAEALAYHAEMTAARAALPFDADGTVIKLDSLRVQEEAGFTSR 310

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I++KF  ++  T L  I + +GRTG +TP+A L P  I G+ ++ ATLHNED+++
Sbjct: 311 APRWAIAYKFPVEEVETLLESISVGVGRTGKITPLAHLSPRLIEGSTVSRATLHNEDFVR 370

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            +           D+RVGD V+V+++G VIP+++ ++ + R  DAQPF+FP+ CP C   
Sbjct: 371 DM-----------DLRVGDTVVVRKSGGVIPQIMRVLPDRRPADAQPFAFPAECPECGHT 419

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +VR           A+      AC AQQ ERL +FVSR+A +I G+G++ +         
Sbjct: 420 LVRSEGD-------ANTYCPNPACPAQQFERLSYFVSREAMDIRGVGERLIRQLLAE--- 469

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              +R  AD + L      S  ++  +   GD    N+   +   +   L R I +LGI+
Sbjct: 470 -GLVRDAADFYFL------SAEQLSGLERSGDKKAANILAQLEASKTRPLWRVINALGIQ 522

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG  ++++LA  + + +         +A              +GD+IA+ +V    +  
Sbjct: 523 HVGTRVSQALAAEFGTLERLLAADAPAVAAVPG----------LGDVIAENLVAALHD-- 570

Query: 621 NICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              A++ LL+ +  +  R  + V    + +     V TGTL +  R   +  +   GA V
Sbjct: 571 --GAMQNLLRRLEEAGVRPPETVQERGTALSGLSFVITGTLSQ-PREYYKALLEAQGARV 627

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  ++ KT  ++ G++ GSKL+KAQQLG  +++E     LL +
Sbjct: 628 TGSVTGKTSFLLAGEDAGSKLDKAQQLGTAVLDEAGLEALLTE 670


>gi|327470726|gb|EGF16182.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK330]
          Length = 652

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 231/698 (33%), Positives = 370/698 (53%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  RI     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRI-----RKEFPQVSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKT 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++     +++ +  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++L
Sbjct: 229 EVLNKLAALDFSVNPTHILADSIEAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +P   PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEVPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESDLVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LG
Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 610 ANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647


>gi|332359434|gb|EGJ37254.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK355]
          Length = 652

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 231/698 (33%), Positives = 371/698 (53%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  RI     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELIVFDQRI-----RKEFPQVSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++     +++ +  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++L
Sbjct: 229 EVLNKLADLDFSVNPTRILADSIQAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +P   PS+CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSYCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LG
Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 610 ANVSGSVSKKTDLVVTGQDAGSKLAKAQELGIEIRDED 647


>gi|332523413|ref|ZP_08399665.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176]
 gi|332314677|gb|EGJ27662.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176]
          Length = 652

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 228/685 (33%), Positives = 363/685 (52%), Gaps = 53/685 (7%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D EYD L     A+   +P+  + + P      +GG +     K  H  P
Sbjct: 19  YYTNDNPTVSDQEYDKLYHELLALETEYPEFIQKDSPT---QGVGGLILSGFEKYQHPYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  RI     K +   + +  E KIDG  I++ Y+ GK V  A R
Sbjct: 76  LYSLQDAFSQEELVAFDRRI-----KLEFPIVTYVAELKIDGLSISLNYKGGKLVTGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+++  I+ I  IP++L   I   I VRGE Y+SK+ F  +N E    G   +A
Sbjct: 131 GDGSVGENITENIKKIKDIPQILKEPID--ITVRGEAYMSKHSFQMINVERQENGETEFA 188

Query: 215 NPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+ + +  R L  F++     S+     Q  +L K+  LGF VNN   
Sbjct: 189 NPRNAAAGTLRQLDTSIVGKRNLASFLYQEASPSQ--ESTQVAVLDKLSYLGFSVNNHRM 246

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
            +++   I  +  E+++ R+ LPYDIDG+V KV + ++Q++LG   ++PRW I++KF  +
Sbjct: 247 VSSSMEDIWQFIQEIEADRAQLPYDIDGIVIKVADLAMQEELGFTVKAPRWAIAYKFPAE 306

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +    +L +D  IGRTG++TP A L PV + G  ++ ATLHN DYI             +
Sbjct: 307 EKEAEILSVDWTIGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AQK 355

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR+GD V+V +AG++IP V+ ++ ++R  D +P   P+ CP CQS +    +       
Sbjct: 356 DIRIGDTVIVYKAGDIIPAVLRVVTDKRK-DQEPILIPNLCPSCQSSLTHLEDE------ 408

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
            A RC   L C +     L+HF SR+A NI GLG   ++  F ++     I   ADI+ L
Sbjct: 409 VALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAVVEKLFTAQ----LIHDVADIYRL 463

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            R Q  S      + G  + S   L  +I   +  S E+ +F LGIRHVG + +R L + 
Sbjct: 464 SREQLLS------LEGIKEKSADKLLSAIADSKEKSAEKLLFGLGIRHVGEKASRLLLET 517

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-V 632
           +   +   Q     IA          ++  +G +IA +I +++  P     +  L  + +
Sbjct: 518 FGDIETVMQSDEEAIA----------QIDGLGHVIANSIAQYFAKPEAQQLISELKSQGL 567

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           + S      + S+ +    +V TG L+++ R +A+  +  LGA V++ +S+KTD+++ G 
Sbjct: 568 NLSYLGQRVDQSAPLYGLTVVLTGKLEEMGRSEAKTKLENLGAKVTSSVSKKTDVVLAGS 627

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFL 717
           + GSKL+KA+QLG++I +E+  L L
Sbjct: 628 DSGSKLDKAKQLGIRIEDEQWLLDL 652


>gi|153806306|ref|ZP_01958974.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185]
 gi|149130983|gb|EDM22189.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185]
          Length = 666

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 236/711 (33%), Positives = 371/711 (52%), Gaps = 59/711 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P  +
Sbjct: 4   KEKIEGLRAELHRHNYNYYVLNAPEISDKEFDEKIRELQDLEQAHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDINKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ +   
Sbjct: 117 SISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   + +R L+ +++ L     +   G Y
Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK L
Sbjct: 236 ENLQEAAKWGFKISDLTRKCKTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSSMLGEKVRFITNC 404

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S++VR      G+  AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 405 PECNSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 458

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLE 551
           ++       I   AD++ L          +ENI G    G+ S  N+   I + + +  E
Sbjct: 459 YR----LGLIHNTADLYDLS---------VENIKGLDRMGEKSAENIITGIAQSKAVPFE 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R IF+LGIR VG  +A+ +AK +           NI      D  +LI +  +G+ IAQ+
Sbjct: 506 RVIFALGIRFVGETVAKKIAKSF----------ENIDELQQADLETLISIDEIGEKIAQS 555

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQE 668
           I+ ++ N  N C +   LK     + R E+++S    ++  + +V +G      R + +E
Sbjct: 556 ILSYFANESN-CELINRLKAAGLQLYRTEEDLSEYTDKLAGQSIVISGVFTHHSRDEYKE 614

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + + G      +S KT  I+ G+N G +KLEKA++LG+ I++E++FL L+
Sbjct: 615 LIEKNGGKNVGSISAKTSFILAGENMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|315037778|ref|YP_004031346.1| DNA ligase [Lactobacillus amylovorus GRL 1112]
 gi|312275911|gb|ADQ58551.1| DNA ligase [Lactobacillus amylovorus GRL 1112]
          Length = 667

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 223/712 (31%), Positives = 388/712 (54%), Gaps = 60/712 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++++A+KE +SL  +++   D YY    P + D+ YD    R   +   FP++     P
Sbjct: 4   ITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG+++    KV H IP LS+  +++ E+L++F  R+    QK   + + + +E
Sbjct: 61  DSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRM----QKLVGHPVEYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GK V A+ RG+G+ GEDV+A    I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN+E    G   +ANPRNAA+G LR+L+P     R L+ F++      E  
Sbjct: 175 YMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEGI 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++ +++M  LGF  N   R+  T   I  + +E  + R++L Y IDG+V K+D+ +
Sbjct: 235 T-SQHQAIERMHELGFHTNETGRKLATLDEIFDFIDEYTAKRNSLTYVIDGIVLKIDDLN 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +  
Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D++P+  
Sbjct: 354 ASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEPYKI 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG + 
Sbjct: 403 PDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I+  ++ S+
Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAELDHFKEKSINNLLTAIDNSKSNSV 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  I  LGI HVGA+ AR +A+ +       + ++ I+A    D  S   +  +G  IA+
Sbjct: 506 ELLITGLGIDHVGAKAARLIAQKF-------KNLSKIMAQGVQDIAS---IDTIGMTIAE 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQKIQR 663
           ++  ++  P     V+ L++E+  S      +G  E+    +  ++K +V TG L+   R
Sbjct: 556 SMTTYFAQPE----VQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTR 611

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +  + +  LGA V+  +S+KT+ +I G + GSK  KA+QLG+ ++ EE+ +
Sbjct: 612 SEFTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAI 663


>gi|149275978|ref|ZP_01882123.1| DNA ligase [Pedobacter sp. BAL39]
 gi|149233406|gb|EDM38780.1| DNA ligase [Pedobacter sp. BAL39]
          Length = 671

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 222/719 (30%), Positives = 381/719 (52%), Gaps = 62/719 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + + ++ +L +E++ H   YY  + P I D E+D      + +   +P+ A   DP
Sbjct: 1   MSKNEVKDKMDALVKELNQHTYDYYVLAMPTIADYEFDRKLAALNKLEQQYPEYA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG++  +   V H  P LSL   +N +DLR F  R+    +K   +   +  E
Sbjct: 58  NSPTQQVGGDITKNFTTVAHKWPMLSLGNTYNEQDLRDFDERV----RKAIGDQFQYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
            K DG  I++ YE  K + A  RGDG  G+DV+  ++ I  IP  LS   IP + E+RGE
Sbjct: 114 LKFDGVSISLTYEDQKLLRAVTRGDGTKGDDVTTNVKTIRNIPHKLSSGTIPSLFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + + +  F  LN E   +G   YANPRN A+G ++  +  ++  R L+ F++        
Sbjct: 174 ILMHRAAFERLNKEREELGEVTYANPRNFAAGTVKMQDSREVAKRPLDCFLYYFNTDKSP 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           F K  +E L+ ++  GF V+   R  NT   ++ + +  +  R  L YDIDG+V KV+ +
Sbjct: 234 F-KTHWESLETLKSWGFHVSEHSRLGNTIEEVLEFISYWEKERFNLSYDIDGIVIKVNSY 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q +LG  A+SPRW IS+K+  ++  T L  +  Q+GRTG +TPVA L+PV + G  + 
Sbjct: 293 AQQAELGFTAKSPRWAISYKYKAQEVETILERVTYQVGRTGAVTPVANLKPVLLAGTTVK 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + I+ L           D+  GD V V++ GE+IPK++++ +++R   A    
Sbjct: 353 RATLHNANEIERL-----------DLHEGDSVFVEKGGEIIPKIINVNLDKRENGAVKII 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           +P+ CP C + ++R    K G++  A+ C    AC  Q + +++HF+ R A +I+GLG +
Sbjct: 402 YPTQCPECGTTLIR----KEGEV--AYYCPNDEACPPQIVGKIQHFIGRKAMDIDGLGDE 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++  ++       ++  +D++ L +R    T +++ I  FG+ S+ N+   I   + + 
Sbjct: 456 TIETCYQHG----LLKHISDLYVLHQR----TEELKAIDRFGERSIENMLKGIESSKQMP 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL------SLIRVPL 603
             + +F LGIR+VG  +AR LA                +A  N D L      +L  +  
Sbjct: 508 FAKVLFGLGIRYVGETVARKLA----------------VATKNIDTLATASLETLTAIDE 551

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQK 660
           +G  IA++I+E++  P +I  +E LLK         EK +   S ++  K  V +G  + 
Sbjct: 552 IGQRIAESIIEYFAKPEHIQQIE-LLKSYGLQFESDEKEIELQSDKLTGKTFVISGVFEN 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             R + +E +   G  + + +S K + ++ GDN G SKLEKA++L + ++++++ L LL
Sbjct: 611 YSREELKEIIELNGGKILSSISAKLNFLVAGDNMGPSKLEKAKKLNIPLISQDELLALL 669


>gi|110637718|ref|YP_677925.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354667|sp|Q11VI1|DNLJ_CYTH3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110280399|gb|ABG58585.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406]
          Length = 670

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 374/709 (52%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QA   +  L + + YH++ YYQ     I D E+D L +    +   FP   +++ P+   
Sbjct: 5   QALARIEELNKVLHYHNNLYYQKDTTEISDFEFDTLLQELIELEKQFPLYLKADSPS--- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +      ++H  P LSL   ++ E++R+F  R+    QK   +++ +  E K D
Sbjct: 62  QRVGGTVTKEFASISHKYPMLSLSNTYSEEEIREFDERV----QKAVGHAVEYVCEMKFD 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  I+I Y+ G    A  RGDG  G+DV+  I+ I +IP ++ S   PE  EVRGEVY+ 
Sbjct: 118 GVAISITYKNGMIAQAVTRGDGVRGDDVTNNIKTIKSIPLKIQSATFPEEFEVRGEVYLP 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  +N E   +G    ANPRNAASG ++  +   +  R L+ F++ L + S      
Sbjct: 178 YEMFERINQEREDIGEAALANPRNAASGTVKMQDSGIVAKRALDCFIYSLLQDSNK-QPT 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
               L +++  GF V++  +       I+ Y N     R  LP   DG+V KV++  LQ 
Sbjct: 237 HAAALAQLKEWGFRVSDSYKVCKNVDEIIQYINHWSEERFKLPLATDGIVIKVNDLRLQS 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++KF  ++AST +L ++ Q+GRTG +TPVA L PV++ G  +  ATL
Sbjct: 297 ELGMTAKSPRWAIAYKFKAEEASTPILSVEYQVGRTGAVTPVANLAPVHLAGTTVKRATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN + ++ L           ++ +GD V V++ GE+IPK+  + V++R   +Q   F   
Sbjct: 357 HNANEMERL-----------NLHIGDTVFVEKGGEIIPKITRVDVSKRIAGSQMIPFIQN 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C ++++R          AA  C     C+ Q   +++HF+ R A NI+G+G + ++ 
Sbjct: 406 CPVCDTKLIRIEGE------AAWYCPNDKGCAPQITGKIEHFIQRKAMNIDGIGSETIEL 459

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            ++ +     IR  AD++TL   Q     +      FG+ SVTN+ + I   +    +  
Sbjct: 460 LYQKK----LIRNVADLYTLTYDQLIQLDR------FGEKSVTNVLNGIEASKQTPFKSV 509

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F++GIR+VG+ +A  LA ++ S          I A        L++ P +G  IAQ+I+
Sbjct: 510 LFAIGIRYVGSTVAEKLALHFKS----------INALEKASIEELLQAPEIGIKIAQSII 559

Query: 614 EFYQNPRNICAVEALLKE-VSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           E++    N+  +E L K  V   +  HE  K  S +   K  V +G  +  +R + ++ +
Sbjct: 560 EWFSVDTNVQLIEDLKKAGVKLELSEHEILKPESDKFAGKSFVISGVFENYERDELKDLI 619

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G  +S+ ++ K + ++ G+N G +KLEKAQ+L + I++E +F+ LL
Sbjct: 620 LKNGGKISSGITGKLNYLVAGENMGPAKLEKAQKLNITILSEAEFISLL 668


>gi|194307280|gb|ACF42137.1| DNA ligase [Mycobacterium lepromatosis]
          Length = 686

 Score =  362 bits (930), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 234/711 (32%), Positives = 363/711 (51%), Gaps = 49/711 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L +E+  H   YY    PII D+E+DAL  R   +    P+L     P+ P   I
Sbjct: 7   RQWRKLAEEVREHQFRYYVRDAPIISDAEFDALLGRLTVLEEQHPEL---RTPDSPTQLI 63

Query: 79  GGEMNLSLFKVT-HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG    + F  T H    LSL+   + ++L  +ITRI R    +  N   +  E K+DG 
Sbjct: 64  GGAGFTTDFVATEHLERMLSLDNASSEDELDAWITRIRR----EIGNDAHYLCELKVDGV 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            +++ Y  G    A  RGDGH+GEDV+   R I  +P  L+++    IPE++EVRGEV+ 
Sbjct: 120 ALSLVYRNGLLNRATTRGDGHTGEDVTLNARTIEDVPERLTVSDIYPIPEVLEVRGEVFF 179

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
              DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG        
Sbjct: 180 RVTDFQALNTSLVEEGKNPFANPRNSAAGSLRQKDPAVTAHRTLRMICHGLGHIEGFRPA 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q++    +R  G PV++     N   G+   ++Y+ E    R  + ++IDG+V K+DE 
Sbjct: 240 TQHQAYLALRAWGLPVSDHTTLVNDIAGVQRRIAYWAEH---RHEVDHEIDGIVVKIDEL 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ + 
Sbjct: 297 ALQRRLGSTSRAPRWAIAYKYLPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVG 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +K         R G  + +GD V++++AGEVIP++V  +V+ R      F 
Sbjct: 357 QATLHNASEVK---------RKG--VLIGDTVVIRKAGEVIPEIVGPVVDLRDGSESEFV 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +  +    T       RC    +C  Q  ER+ H  SR   +I+GLG +
Sbjct: 406 MPTTCPECGTTLAPEKEGDTDI-----RCPNARSCPGQLRERVFHVASRSVLDIQGLGYE 460

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                  ++     I    D+FTL       T    N  G    +   L  +++K +   
Sbjct: 461 AGVALLAAQ----VITSEGDLFTLTEDDLLRTELFRNKAGKLSANGKRLLVNVDKAKTAP 516

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA  + S       I+ I+A + +    L  V  VG  IA
Sbjct: 517 LWRVLVALSIRHVGPTAARALAAEFGS-------IDAILAASPE---QLAAVEGVGAAIA 566

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            A+ E++    +   V+         +   + +V    E   +V TG+L    R  A+E 
Sbjct: 567 AAVTEWFAVDWHRAIVDKWRAAGVRMVDERDTSVPPTCEGLTIVVTGSLAGFSRDDAKEA 626

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G  V+  +S+K   ++VGD PGSK +KA +LGV I++E+ F  LL+Q
Sbjct: 627 IVARGGKVAGAVSKKIAYVVVGDLPGSKYDKAIELGVPILDEDGFRLLLEQ 677


>gi|323467080|gb|ADX70767.1| DNA ligase [Lactobacillus helveticus H10]
          Length = 689

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 229/721 (31%), Positives = 391/721 (54%), Gaps = 63/721 (8%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q + +  +++++A+KE +SL  ++    D YY    P + D+ YD    R   +  AFP+
Sbjct: 18  QEVKMAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPE 77

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           +     P+    ++GGE++    KV H IP LS+  +++ ++L++F  R+    QK   +
Sbjct: 78  IVT---PDSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRM----QKLVGH 130

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + + +E KIDG  +++ Y+ GK V A+ RG+G+ GEDV+A  R I  IP+VL    P  
Sbjct: 131 PVEYNVELKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPE--PLT 188

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG- 242
           IEVRGE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++  
Sbjct: 189 IEVRGECYMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTW 248

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +    EI +  Q++ +++M  LGF  N   R+      +  + +E  + R++L Y IDG+
Sbjct: 249 VNPPREITS--QHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGI 306

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD+ SL++QLG   + PRW I++KF  ++  T + DI   +GRTG++TP A + PV 
Sbjct: 307 VLKVDDLSLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMYPVQ 366

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+LHN DY+             + +R+GD V + +AG++IP++ ++++++R 
Sbjct: 367 LAGTTVARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLSKRP 415

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D+ P+  P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A N
Sbjct: 416 ADSVPYEIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMN 468

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I GLG + +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I
Sbjct: 469 IAGLGPKIVKQLI-AKDLVHNV---ADLYHL------TEDDLAQLDHFKEKSINNLLTAI 518

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           +  +  S+E  I  LGI HVGA+ AR +A+ +       + +  I++    D  S   + 
Sbjct: 519 DNSKKNSVELLITGLGIDHVGAKAARLIAQKF-------KNLEKIMSLGVQDIAS---ID 568

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVF 654
            +G   A+++  ++  P      + L++E+  S      +G  E+  + +   ++K +V 
Sbjct: 569 TIGMATAESMTTYFAQPE----AQKLIEELRESGLNMDYLGADEQEEAPDNPFKDKTVVL 624

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG L+   R +  + +  LGA V+  +S KTD +I G + GSK  KA+QLGV ++ EE+ 
Sbjct: 625 TGKLEHYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEA 684

Query: 715 L 715
           +
Sbjct: 685 I 685


>gi|261377933|ref|ZP_05982506.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685]
 gi|269145793|gb|EEZ72211.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685]
          Length = 831

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 238/672 (35%), Positives = 359/672 (53%), Gaps = 109/672 (16%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 22  YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 78

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D  +  + +EPK DG  I++ Y  G  
Sbjct: 79  MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 138

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  ++ +  IP R+   N PE+IEVRGEV + K DF ALN     
Sbjct: 139 VQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 198

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 199 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFEAEEHIQELAYFQEL 257

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y +M+  R  LPY+IDG+V KV+  + Q++LG  +R+
Sbjct: 258 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 315

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D    
Sbjct: 316 PRWAIAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 371

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                +V R  +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 372 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVMGLSDGIKYQQDD 424

Query: 423 --------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
                         P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+
Sbjct: 425 LFAEAPAANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQR 478

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTSTT- 522
            + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++T+   
Sbjct: 479 AQGLIHFASRKAMDIDGLGQKQIEQLVGQD----LVRHFADLYRLDIPTLQKMKETADKG 534

Query: 523 KIENILG-----FGDVS--------------VTNLYDSINKRRNISLERFIFSLGIRHVG 563
             EN  G      GD+S                N+   I   +   L RF+F+LGIRHVG
Sbjct: 535 SSENEDGDAETVSGDLSERNTQNGKKQPTKWAENILAGIEASKTPELSRFLFALGIRHVG 594

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRNI 622
              A++LA+ + S ++  +    I+A           +P +G ++A +I  F+ Q+ +  
Sbjct: 595 ERTAKTLAQAFGSLEHVRRAPEPILAC----------LPDIGTVVAHSIAYFFAQDAQQA 644

Query: 623 CAVEALLKEVSP 634
              E L   V+P
Sbjct: 645 MIDELLAAGVAP 656



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 45/72 (62%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV
Sbjct: 759 VAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGV 818

Query: 707 KIMNEEQFLFLL 718
            +++E + L LL
Sbjct: 819 SVLSEAELLTLL 830


>gi|149372321|ref|ZP_01891509.1| putative DNA ligase [unidentified eubacterium SCB49]
 gi|149354711|gb|EDM43274.1| putative DNA ligase [unidentified eubacterium SCB49]
          Length = 677

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 235/726 (32%), Positives = 374/726 (51%), Gaps = 70/726 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IEQ  KEL    +E+  ++  YY      + D E+D   +    +  A P+     D 
Sbjct: 1   MNIEQQIKEL---REELRAYNYQYYVLDNATVSDFEFDQKLKELQQLEDAHPEYF---DA 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GGE+  +   V H+    SL+  ++ EDL  + TR+    +K  D  + +  E
Sbjct: 55  NSPTQRVGGEITKNFETVKHNFRMYSLDNSYSKEDLEDWETRV----KKMVDGDVNYACE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  +++ YEKG  V A  RGDG  G++V+A ++ I ++P  L  + PE+ E+RGE+
Sbjct: 111 LKYDGASMSLTYEKGVLVRAVTRGDGFQGDNVTANVKTIKSVPLQLKGDYPELFEIRGEI 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            +  + F A+N+E IA G +PY NPRN ASG L+  +  ++  R L+  ++ L   +++ 
Sbjct: 171 VLPFDGFNAMNEERIAAGEEPYRNPRNTASGSLKLQDSAEVAKRPLDCLLYSL-VANKLP 229

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E L+K    GF V    + A++   ++ + N     R  LPY+ DG+V KV+   
Sbjct: 230 VATQMEGLKKASDWGFKVPPVAKLASSIEEVLEFVNYWDKHRHELPYETDGVVVKVNSLQ 289

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  ++SPRW +++KF  +Q ST L +I  Q+GRTG +TPVA L+PV + G  +  
Sbjct: 290 QQEELGYTSKSPRWAMAYKFKAEQVSTVLEEITYQVGRTGAITPVANLQPVELAGTTVKR 349

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D I+ L           DIR  D V V++ GE+IPK++ + + ER  D+QP  +
Sbjct: 350 ASLHNADQIEKL-----------DIRERDTVYVEKGGEIIPKIIGVNLEERPEDSQPTKY 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            S CP C + +VR          A H C     CS Q + R++HF+SR A +IEGLG + 
Sbjct: 399 ISQCPDCHTALVRTEGD------AKHYCPNEEGCSTQIIGRIQHFISRKAMDIEGLGGET 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRN 547
           +            I+  AD++ L          +E+IL        S  NL + ++K + 
Sbjct: 453 VALLVNE----GVIKNYADLYAL---------TVEDILPLERMAQKSAENLVEGVSKSKE 499

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           I  ER +F+LGIR VG  +A+ LAK++ S          I A     +  LI V  +GD 
Sbjct: 500 IPFERVLFALGIRFVGETVAKKLAKHFKS----------IDALMEASFEQLIAVDEIGDR 549

Query: 608 IAQAIVEFY------------QNPRNICAVEALLK-EVSPSIGRHE-KNVSSEIENKKLV 653
           IA++++ F+            Q   +   VE L    V  +I   E    +  +     V
Sbjct: 550 IAESVLAFFKIETQDLFSEIKQGETHREVVERLRAYGVQLAISEEELAGQTDTLAGSTFV 609

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEE 712
            +G   K+ R + ++ +   G  VS  +S+KT  ++ GD  G SK  KA++LGV I+ E+
Sbjct: 610 VSGVFAKVSRTELKKLIEDNGGKVSGSISKKTSYVVAGDKMGPSKRTKAEELGVVIITED 669

Query: 713 QFLFLL 718
            FL ++
Sbjct: 670 DFLAMI 675


>gi|189347498|ref|YP_001944027.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245]
 gi|254781283|sp|B3EFT6|DNLJ_CHLL2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189341645|gb|ACD91048.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245]
          Length = 673

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 223/714 (31%), Positives = 370/714 (51%), Gaps = 58/714 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A  E++ L +EI  H+  YY  ++P+I D E+D L  +  A+    PDL     P+ P  
Sbjct: 6   AADEIARLRKEIERHNYLYYVEAEPVISDYEFDRLLEQLIALERLHPDLV---TPDSPSL 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++  S   V H  P LSL   +++E++  F  R+ R    +         E K DG
Sbjct: 63  RVGGQITRSFPSVRHREPMLSLSNTYSMEEVADFYRRVRRLLLDEGIGEQEMVAELKFDG 122

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-------IEVRG 189
             +++ Y  G  V  A RGDG  G+D++  +R I +IP  L  +  E        IEVRG
Sbjct: 123 VAVSLIYRNGLLVQGATRGDGVQGDDITVNLRTISSIPLRLETSASETLSGSDREIEVRG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGK 245
           EV++ K DF  LN+      R  +ANPRNA +G L+  +  ++ R    ++ +F+ G+G 
Sbjct: 183 EVFMPKEDFDRLNEGRPEEDR--FANPRNATAGTLKLQDSAEVARRRMTFVAYFLKGIGD 240

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                    ++ L+ +  LGF   +  R     H I  +  E    R  LPY+ DG+V K
Sbjct: 241 QH----MPHFDRLKLLGKLGFFTGDHYRLCPELHDIERFIGEWSEKRWKLPYETDGVVLK 296

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           ++   L ++LG  ++SPRW I++K+  +QA T LL +  Q+GR G +TPVA L PV + G
Sbjct: 297 LNAVWLWERLGATSKSPRWAIAYKYPAQQAITELLGVVFQVGRLGTITPVAELRPVKLAG 356

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + ++ +TLHN D I+ L            +RV DRV+V+++GEVIPK++ +  +     +
Sbjct: 357 STVSRSTLHNFDEIERL-----------GVRVHDRVVVEKSGEVIPKIIRVAEDSGSLFS 405

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P   P  CP C + + R  N        +  C     C AQ   R+ H+ SR+A +I+ 
Sbjct: 406 VPIVVPERCPSCDTPLTRPENE------VSWYCPNEEGCPAQIRGRMLHYASRNAMDIQS 459

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG   +D           ++ P D+++LQ  Q      +E +   G  S  NL  +I + 
Sbjct: 460 LGIALVDQLVGRG----LVKDPGDLYSLQLPQ------LEPLERMGTKSSINLVRAIEES 509

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R  S +R +++LGIRHVG   AR LA  Y  + +  +     +A           VP +G
Sbjct: 510 RTKSYDRLLYALGIRHVGQATARELAGAYPYFASLHEAGEQELAE----------VPDIG 559

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++A++I++F+  P     ++ L +   P   G+ ++ V++  E + ++FTG L++  R 
Sbjct: 560 PVVARSIIDFFSKPWVQAMLDKLEQAGLPMRAGKEKEQVNNNFEGQSVIFTGGLERHVRQ 619

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+E V + G  + + +S+KT +++ G   GSKLE+A +LGV+++ E++F  +L
Sbjct: 620 EAEEMVRERGGRIVSSVSKKTSLVVAGKEAGSKLERALKLGVRVIGEDEFEAML 673


>gi|254670337|emb|CBA05747.1| DNA ligase [Neisseria meningitidis alpha153]
          Length = 841

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 230/661 (34%), Positives = 349/661 (52%), Gaps = 103/661 (15%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 44  YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F Q+     D     + +EPK DG  I++ Y  G  
Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV + K DF ALN     
Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + NG      F  I   +++Y  M+  R  LPY+IDG+V KV+  + Q++LG  +R+
Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYERMQQKRPKLPYEIDGMVVKVNSLAQQRELGFISRA 337

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D    
Sbjct: 338 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422
                +V R  +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446

Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                        P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ 
Sbjct: 447 FAEAPAANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTSTTKI 524
           + L HF SR A +I+GLG++Q++     +     +R  AD++     TLQ+ ++T+   +
Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETTDKTV 556

Query: 525 ---ENILGFGDVS-------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
              E +   G                  N+   I   +   L RF+F+LGIRHVG   A+
Sbjct: 557 AESEQMPSEGSSVGASGKHKKPPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           +LA+ + + +   +    ++A           +P +G ++A +I  F+        ++ L
Sbjct: 617 TLAQAFGTLERVRRAPEPVLAC----------LPDIGTVVAHSIAHFFAQAEQQAMIDEL 666

Query: 629 L 629
           L
Sbjct: 667 L 667



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
            ++  +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA
Sbjct: 764 GINEAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKA 823

Query: 702 QQLGVKIMNEEQFLFLL 718
             LGV +++E + L LL
Sbjct: 824 NALGVSVLSEAELLTLL 840


>gi|163788595|ref|ZP_02183040.1| putative DNA ligase [Flavobacteriales bacterium ALC-1]
 gi|159875832|gb|EDP69891.1| putative DNA ligase [Flavobacteriales bacterium ALC-1]
          Length = 664

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 231/706 (32%), Positives = 373/706 (52%), Gaps = 55/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L +E+  H+  YY      I D E+D   +   A+  A P+     DPN P  
Sbjct: 3   TKQKIEILREELRQHNYNYYILDNATISDYEFDIKLKELQALEEANPEFF---DPNSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE+  +     H     SL+  ++ EDL  + TRI    +K  D  + +  E K DG
Sbjct: 60  RVGGEITKNFNTTVHDFRMYSLDNSYSKEDLLDWETRI----KKMVDGEVQYNCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE GK V A  RGDG  G++V+A ++ I T+P  L  + PE  ++RGE+ +   
Sbjct: 116 ASMNLTYENGKLVRAVTRGDGVQGDEVTANVKTIKTVPLQLKGDFPERFDIRGEIILPIE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            FL +N+E IA   +PY NPRN ASG L+  +  ++  R L   ++ + K + +  + Q+
Sbjct: 176 GFLKMNEERIANDEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYSI-KGNNLNIQSQF 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+K R  GF V    +  N+   ++ Y       R  LPY+IDG+V KV++   Q +L
Sbjct: 235 EGLKKAREWGFKVPKEAKLVNSIDAVLDYVEYWDEHRHNLPYEIDGVVVKVNDLYQQDEL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++PRW +++KF  +Q STRL +I  Q+GRTG +TPVA LEPV + G ++  A+LHN
Sbjct: 295 GFTAKAPRWAMAYKFKAEQVSTRLNEITYQVGRTGAITPVANLEPVQLAGTIVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           DIR GD V V++ GE+IPK++ + +++R  D++P  + S CP
Sbjct: 355 ADQIEKL-----------DIREGDEVFVEKGGEIIPKIIAVDLSKRPEDSKPTVYISCCP 403

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C++ + R          A H C     C  Q + R++HF+SR A +IEGLG + +    
Sbjct: 404 ECETTLERIEGE------AKHYCPNYNGCPPQVVGRIQHFISRKAMDIEGLGGETVALLV 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K       I+  +D++ L   Q     ++       + S  NL + +   + I  ER +F
Sbjct: 458 KE----GLIKDYSDLYELTVAQVIPLERM------AEKSAENLINGVEVSKQIPFERVLF 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR+VG  +A+ LAK+Y S       I+ ++       L LI V  +G+ IA+++VEF
Sbjct: 508 GLGIRYVGETVAKKLAKHYKS-------IDALMFATT---LDLIAVDEIGERIAESVVEF 557

Query: 616 YQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +    N   +E L       E+S        N + +++   +V +G  + I R++ ++ +
Sbjct: 558 FSLGENRKIIERLKSFGVQLEISAD---KLANQTDKLKGFSIVVSGVFETISRNELKKLI 614

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
              GA VS+ +S KT  ++ GD  G SK  KA+ L + I+ E++FL
Sbjct: 615 EDNGAKVSSSISSKTSYLVAGDKMGPSKRTKAESLNIPIITEQEFL 660


>gi|38233671|ref|NP_939438.1| NAD-dependent DNA ligase LigA [Corynebacterium diphtheriae NCTC
           13129]
 gi|81401524|sp|Q6NHQ4|DNLJ_CORDI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|38199932|emb|CAE49600.1| DNA ligase [Corynebacterium diphtheriae]
          Length = 677

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 233/716 (32%), Positives = 376/716 (52%), Gaps = 67/716 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++   L +++ +H D YY ++ P I D+E+D L R+   +    P+LA    P  P  +
Sbjct: 9   RRQWDDLAEQVRHHRDAYYNHT-PEISDAEFDQLFRQLQQLEQEHPELAV---PESPTLR 64

Query: 78  IGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G  +  S F  V H    LSL+ +++  +L  ++ R           S  +  E KIDG
Sbjct: 65  VGAPVEQSSFDNVEHLERMLSLDNVFDAAELDDWLQRT---------PSATYLTELKIDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVY 192
             I + Y  G+   AA RGDG  GEDV+A  + I  IP  L    +  +PE++E+RGEV+
Sbjct: 116 LSIDLVYRSGRLERAATRGDGRVGEDVTANAKVIEDIPHRLQHSDAYPVPELVEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251
           I+  DF  +N++    G KP+ANPRNAA+G LR+ +   +  R L    HG+G +    A
Sbjct: 176 IAVEDFALVNEQRQKEGGKPFANPRNAAAGSLRQKDTEAVRKRRLKMICHGIGASEGFEA 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q++  + +   G PV+   ++ ++   +          R    +++DGLV K+D F+ 
Sbjct: 236 DTQFDAYKALEAWGLPVSPYTKRVHSAQEVQERVTYWAQHRHDATHEMDGLVIKIDSFAE 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  AR+PRW I++K+  ++ +T+LLDI + +GRTG +TP A ++PV + G+ +  A
Sbjct: 296 QRALGSTARAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMDPVFVAGSTVEMA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+  +K         R G  + +GD V++++AGEVIP+V+  +V +R    + F FP
Sbjct: 356 TLHNQTEVK---------RKG--VLIGDTVVIRKAGEVIPEVLGPVVEKRDGSEREFIFP 404

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C +R    L P+  +  A  RC    +C AQ   RL +   R AF+IE LG++  
Sbjct: 405 TLCPACGTR----LAPQK-EDDADWRCPNSQSCPAQLSSRLTYLAGRGAFDIEALGEKGA 459

Query: 492 DFFFKSEDPAFSIRI-PADIFTLQ----RRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           +    S      + I  A +F L     +R +  TTK   +   G+  + NL  +    +
Sbjct: 460 EDLIAS-----GVLIDEAQLFNLTEDDLKRTKVYTTKAGALNATGEKLLANLESA----K 510

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVG 605
           +  L R + +L IRHVG   AR+LA  Y S +   A ++ +I                VG
Sbjct: 511 HTDLWRVLVALSIRHVGPTAARALAVRYRSLEALRAADVEDIANTEG-----------VG 559

Query: 606 DIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQ 662
            IIAQ+  +++  P  RNI  V A   +   ++   E ++  ++ E   +V TG+L    
Sbjct: 560 AIIAQSFAQWFDVPWHRNIVEVWA---DAGVTMADSEADIPDQVLEGLTIVVTGSLVDFS 616

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A+E +   G   S  +S+KT  ++VG+N GSK  KA+ LG++I+NE++F  LL
Sbjct: 617 RDSAKEAIVSRGGKASGSVSKKTSYVVVGENAGSKETKARDLGLRILNEDEFKQLL 672


>gi|56751245|ref|YP_171946.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 6301]
 gi|81299088|ref|YP_399296.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 7942]
 gi|81596046|sp|Q5N2P4|DNLJ_SYNP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123728245|sp|Q31RL0|DNLJ_SYNE7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56686204|dbj|BAD79426.1| DNA ligase [Synechococcus elongatus PCC 6301]
 gi|81167969|gb|ABB56309.1| DNA ligase, NAD-dependent [Synechococcus elongatus PCC 7942]
          Length = 679

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 237/713 (33%), Positives = 356/713 (49%), Gaps = 53/713 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I Q   EL  L Q+ SY    YY   +P++ D+ YD L R    +    P L     P+
Sbjct: 12  AIAQRASELRQLLQQASY---AYYVLDQPVMEDAVYDRLYRELQDLEQQHPSLI---TPD 65

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN---SIFFT 129
            P  ++G +       V H IP  SLE  ++ E+LR +  R    W+K   +      + 
Sbjct: 66  SPTQRVGEQPATGFESVQHRIPLYSLENAFDAEELRSWDQR----WRKLAPDVPADAGYV 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188
            E KIDG  I + YE G  V  A RGDG  GE+++A +R I +IP R+ +   PE +EVR
Sbjct: 122 CELKIDGAAIALSYENGLLVRGATRGDGTRGEEITANLRTIKSIPLRLQTDQPPEWLEVR 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE ++S   F  LN E    G   +ANPRNAA+G LR+L+P  +  R L+FF + +   +
Sbjct: 182 GEAFLSLTRFKQLNTEREKHGEALFANPRNAAAGTLRQLDPRIVAERQLDFFAYSIQGPN 241

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +     Q   L  ++ LGF V    +   T   +  Y+++  + R  LPY  DG+V K+ 
Sbjct: 242 DWANLDQAASLDCLQSLGFRVEPHRQTCPTLAEVEQYFSDWDARRRDLPYLTDGVVVKLQ 301

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ +LG   + PRW I+ K+   +A T+L  + +Q+GRTG LTPVA   PV + G  
Sbjct: 302 SRRLQDELGFTQKFPRWAIALKYPADEAPTQLQHVTVQVGRTGALTPVAEFSPVALAGTT 361

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN D ++ L           D+ +GD ++V++AGE+IP+VV ++ + R  DA+P
Sbjct: 362 VSRATLHNADRLREL-----------DLHIGDTIVVRKAGEIIPEVVRVLTDLRPADAKP 410

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C   V R       +  A  RC     C A     L H+ SRDA +IEGLG
Sbjct: 411 VVLPEKCPECGQPVQRP------EEEAVTRCVNS-TCPAIVRGALTHWASRDALDIEGLG 463

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +D           +   AD++ L          + ++  FG+ S  NL  +I K R 
Sbjct: 464 EKLVDQLVSK----GLVNAIADLYRL------DAPLLASLERFGEKSAQNLVQAIAKSRQ 513

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R ++ LGIRHVG+  A++LA  + S +  AQ   + +A           V  +G  
Sbjct: 514 QPWSRVLYGLGIRHVGSVNAKNLAATFTSAEALAQATPDELAA----------VYGIGSE 563

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA A+ +++    N   + AL +      G      S  +  +  V TGTL  + R++A+
Sbjct: 564 IADAVHQWFTVATNQNLIAALEQAGLQLHGEAASPRSQALAGQTFVLTGTLPTLSRNEAK 623

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +   G  VS  +S+KT  ++ G+  GSKLEKA  L +  +NE Q L LL Q
Sbjct: 624 ALIEAAGGKVSGSVSKKTSYVVAGEEAGSKLEKAIALNIPQLNETQLLDLLAQ 676


>gi|260175035|ref|ZP_05761447.1| DNA ligase [Bacteroides sp. D2]
 gi|315923266|ref|ZP_07919506.1| DNA ligase [Bacteroides sp. D2]
 gi|313697141|gb|EFS33976.1| DNA ligase [Bacteroides sp. D2]
          Length = 666

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 236/713 (33%), Positives = 373/713 (52%), Gaps = 63/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P  +
Sbjct: 4   KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ +   
Sbjct: 117 SISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N + + +R L+ +++ L     +   G Y
Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK L
Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429
            D I+GL           D+ +GD V V++ GE+IPK+  +       DA+ F       
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP C S++VR      G+  AAH C    AC  Q   +++HF+SR A NI+GLG +
Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F++       I+  AD++ L      +   I+ +   G+ S  N+   I + + + 
Sbjct: 454 TVDMFYRLR----LIKNTADLYKL------TADDIKGLDRMGEKSAENIITGIAQSKTVP 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IA
Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666
           Q+I+ ++ N  N   V A LKE    + R E+++S    ++  + +V +G      R + 
Sbjct: 554 QSILAYFANESNRELV-AKLKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEY 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +E + + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|302344112|ref|YP_003808641.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075]
 gi|301640725|gb|ADK86047.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075]
          Length = 691

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 234/717 (32%), Positives = 369/717 (51%), Gaps = 42/717 (5%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E  S+  A + ++ L +E+      YY   +  + D+ YD      + +   FP L  +
Sbjct: 1   MEKPSLSAAARRVAQLSEELRRWSRVYYNEGRQEVADALYDQRFAELEELERLFPMLRLA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P     ++G     S   V+H  P LSLE   +   +   + R+    Q +       
Sbjct: 61  DSPT---RRVGAPPQSSFAAVSHFRPMLSLESRGDFGLVGDLLRRLADAGQPE----AAI 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             +PKIDG  I + YE      A+ RGDG  G+DV+   R +  IP  L    P ++ VR
Sbjct: 114 LAQPKIDGLSIELVYENNLLRTASTRGDGVVGDDVTTNARVVGGIPHALEGLAPALVVVR 173

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+ +  FL LN +++A G+  +ANPRNAA+G LR+ +P     R L FFV  L    
Sbjct: 174 GEVYMDRAGFLDLNRQLVAQGQDGFANPRNAAAGSLRQQDPFVTAGRPLRFFVFELVNAD 233

Query: 248 EIFAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           ++      + L+ +   GFP+ ++ +R       +   + +  + R+ LP+DIDG+  KV
Sbjct: 234 DLGLASDSDALRLLGQWGFPLTDDHLRLGRGAEFVRQAHADYLARRAELPFDIDGVALKV 293

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +L+  LG+R+R+PRW ++ KF  +Q  T +LD+ +Q+GRTG LTPVA LEPV+IGG 
Sbjct: 294 DDLALRGVLGQRSRTPRWAVAWKFPPRQEVTPVLDVVVQVGRTGKLTPVALLEPVDIGGV 353

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN---ERHP 423
            +  ATLHN + +  L           D+RVGD   ++RAG+VIP+V  +      ER  
Sbjct: 354 TVARATLHNFEEVARL-----------DLRVGDLARMERAGDVIPRVAGVARQAPPERRG 402

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            A     P+ CP+C + +VRD           HRC   L C AQQ   L+HF SR A ++
Sbjct: 403 PA--IVAPTHCPVCGATIVRDEGGVN------HRCPNSLGCPAQQKAALRHFASRAAMDV 454

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG + ++  ++     F   +P+ ++ L  R+     ++  + G+G++S  NL  +I 
Sbjct: 455 EGLGGKNVEALWER---GFLSDLPS-LYALAARRD----ELAGLRGWGELSADNLLRAIA 506

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--IAHNNDDWLSLIRV 601
             +  +L+RFIF+LGI  VG E A+ LA+   S +      +     A +    L L  +
Sbjct: 507 ATKGAALDRFIFALGIPGVGQETAKLLAQRLGSLEALVAAADGWRKPAKDRPAGLYLDDI 566

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQK 660
             VG   A+ I  F+Q P+       L + V P+          + +  K +VFTG L+ 
Sbjct: 567 AGVGPKTAEDIQRFFQTPQTRQTALKLAELVGPTWAESPTPRAGAPLAGKTIVFTGRLEG 626

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + R +A+      GA V+  +SR TD +++G+NPG KL +A++LGV  M   +FL L
Sbjct: 627 LSRPQAKALAEAAGAKVAGQVSRSTDWLVLGENPGGKLGEARKLGVPTMTLAEFLTL 683


>gi|237717569|ref|ZP_04548050.1| DNA ligase [Bacteroides sp. 2_2_4]
 gi|293371586|ref|ZP_06618001.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f]
 gi|229453155|gb|EEO58946.1| DNA ligase [Bacteroides sp. 2_2_4]
 gi|292633449|gb|EFF52017.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f]
          Length = 666

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 236/713 (33%), Positives = 373/713 (52%), Gaps = 63/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P  +
Sbjct: 4   KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ +   
Sbjct: 117 SISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N + + +R L+ +++ L     +   G Y
Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK L
Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429
            D I+GL           D+ +GD V V++ GE+IPK+  +       DA+ F       
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP C S++VR      G+  AAH C    AC  Q   +++HF+SR A NI+GLG +
Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F++       I+  AD++ L      +   I+ +   G+ S  N+   I + + + 
Sbjct: 454 TVDMFYR----LGLIKNTADLYKL------TADDIKGLDRMGEKSAENIITGIAQSKTVP 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IA
Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666
           Q+I+ ++ N  N   V A LKE    + R E+++S    ++  + +V +G      R + 
Sbjct: 554 QSILAYFANESNRELV-AKLKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEY 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +E + + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|282896837|ref|ZP_06304843.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9]
 gi|281198246|gb|EFA73136.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9]
          Length = 692

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 241/722 (33%), Positives = 380/722 (52%), Gaps = 70/722 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q  +EL  L Q+  Y    YY    PI+ D+ YD L R    +   +P+L  S+ P    
Sbjct: 12  QRVEELRKLLQQAGY---AYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTSDSPT--- 65

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKI 134
            ++G         V H+IP  SLE  +N+E+L+ +  R  R          + +  E KI
Sbjct: 66  QRVGERPATHFSSVRHNIPLYSLENAFNVEELQTWNQRWIRHLPTPHSLTKVEYVAELKI 125

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-----EIIEVRG 189
           DG  + + Y+ G  V  A RGDG +GED++  +R I +IP  L LN       E +EVRG
Sbjct: 126 DGAALALTYQNGVLVKGATRGDGITGEDITPNVRTIRSIP--LRLNFDGIEPIEKVEVRG 183

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GK 245
           EV++    F  +N +    G + +ANPRNA +G LR+L+P  +  R L+FF + L   G 
Sbjct: 184 EVFLPLEVFKQINQKRQKAGEQLFANPRNAVAGTLRQLDPRVVAQRQLDFFAYTLHIPGL 243

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                A  Q+E L+ ++ LGF V+   +  ++   +  YY    + R   PY  DG+V K
Sbjct: 244 DDRSIANTQWESLELLQKLGFRVDVNHKLCSSVDEVAQYYQYWNTERLNSPYMTDGVVVK 303

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           ++ F LQ+QLG   + PRW I+ K+A ++A TR+ +I + +GRTG LTP+A + PV + G
Sbjct: 304 LNAFKLQEQLGFTQKFPRWAIALKYAAEEAPTRVENIMVNVGRTGALTPLAEMRPVQLAG 363

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ ATLHN D ++ L           DIR+GD V+V++AGE+IP+VV +I   R  + 
Sbjct: 364 TTVSRATLHNSDRLREL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPNET 412

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF  P+ CP+C   VVR+L    G++V   RC    +C A     ++H+VSRDA +I+G
Sbjct: 413 KPFIMPTNCPVCGQPVVREL----GEVVT--RCVNA-SCPAILKGEIEHWVSRDALDIKG 465

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G++      +  D    +   AD+++L   Q     ++      G  S   L   I + 
Sbjct: 466 IGEK---LVHQLVDKGL-VHSVADLYSLTEEQLCGLERM------GKRSAEKLVQVIRES 515

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N    R ++ LGIRHVG   A+ L++ + +    A       A  +D    +  V  +G
Sbjct: 516 KNQPWSRVLYGLGIRHVGNVNAQLLSEKFTTVDKLA------TAKQSD----IEGVYGIG 565

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---------RHEKNVSSEIENKKLVFTG 656
             IAQ++ +++    +I A + L+  +  SIG          +      ++ NK  V TG
Sbjct: 566 VEIAQSVYQWF----HISANQNLITRLQ-SIGLQFDQTQLIYNAAATKPDLVNKIFVITG 620

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +A+  + + GA V+  LS+KTD ++VGD  GSKLEKA+ LG+K ++E + L 
Sbjct: 621 TLPTLKRDEAKSLIQKAGAKVTDSLSKKTDFVVVGDKAGSKLEKARALGIKQLDEAELLE 680

Query: 717 LL 718
           +L
Sbjct: 681 ML 682


>gi|325694926|gb|EGD36831.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK150]
          Length = 652

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 230/698 (32%), Positives = 370/698 (53%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  R+ + + +     + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVCKEFPQ-----VSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++     +++ +  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            +L K+  LGF VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++L
Sbjct: 229 AVLNKLAALGFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEREAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +P   PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V        K   A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVH------FKDEVALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSLGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LG
Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQNLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 610 ANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647


>gi|308811310|ref|XP_003082963.1| COG0272: NAD-dependent DNA ligase (ISS) [Ostreococcus tauri]
 gi|116054841|emb|CAL56918.1| COG0272: NAD-dependent DNA ligase (ISS) [Ostreococcus tauri]
          Length = 808

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 255/787 (32%), Positives = 381/787 (48%), Gaps = 128/787 (16%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++L++++AR+EL  L +E+++HD  YY   + +I DSEYD+L+ R  AI    P  AR+ 
Sbjct: 63  DSLTVDEARRELERLNEELAHHDRSYYNDGEGVISDSEYDSLRARYLAIERLHPSAARAL 122

Query: 70  DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              G   ++G   +    L K+ H+ P  SL   ++I  +  F+ R+     +K    I 
Sbjct: 123 ---GASARVGATPDDQSGLEKIAHATPMRSLGNAFDIAQVEAFVNRV-----EKAHGEI- 173

Query: 128 FTLEPKIDGTMITIRYEKG------KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
                   G   ++RYE G       F  A +R                   P  L    
Sbjct: 174 --------GVDASLRYENGFSRCDETFSQARVR-------------------PTRLKAPY 206

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241
           P ++E+RGEV++++ DF  +N E  A G + + N RNAA+G +R LN  D    L F  +
Sbjct: 207 PAVLEIRGEVHVAEEDFRRVNAERAATGVRVFKNARNAAAGAMRLLNAEDNQMPLRFLAY 266

Query: 242 GLGKTSEIFAKG------QYEMLQK-MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G G   E  A        Q E L   +   GF     +   +T  G++  Y  ++  R +
Sbjct: 267 GWGAAGETDADANAPWVTQSEFLSSFLPSQGFDAVPVLGVTSTVEGLMETYEALEIARPS 326

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           +PY+IDG+VYKV+  +LQ+ LG  AR PRW I+HKF    A T L  I+IQ+GRTG LTP
Sbjct: 327 MPYEIDGVVYKVNSVALQQTLGADARQPRWAIAHKFTAMSAVTTLRAIEIQVGRTGALTP 386

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           V  L+PV+IGGA I  ATLHN D I           G + ++VG +V+V+RAG+VIP+VV
Sbjct: 387 VGLLDPVDIGGACIQRATLHNFDEI-----------GRKRLKVGAQVMVERAGDVIPRVV 435

Query: 415 -----DIIVNERHP-DAQPFS---FPSFCPICQSRVVR-DLNPKTGKLVAAHRCTGGLAC 464
                D+     +P DA P      PS CP C + VVR  L+     +    RCTGGL C
Sbjct: 436 SLAGEDLAEAAAYPEDALPLPEWLPPSKCPDCGASVVRAPLSASKNAMGTIVRCTGGLKC 495

Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST--- 521
            +Q +ERL HF SRDA +I GL +  L+   +       ++ PADIFTL+RR    +   
Sbjct: 496 PSQSMERLLHFCSRDALDIRGLARATLETLHREG----VVKTPADIFTLERRFGPDSGET 551

Query: 522 -------TKIENILG----FGD---VSVTNLYDSIN-KRRNISLERFIFSLGIRHVGAEI 566
                  T ++N  G      D    S   L+ +I  +RR + L RFI++LGI ++GA  
Sbjct: 552 VPTWWRYTGVKNSKGEVKEGSDGLKASAVKLFQAIELRRRGVPLHRFIYALGIPNIGAHT 611

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWL---SLIRVPLVGDIIAQAIVEFYQNPRNIC 623
           A+ LA +Y+S   F ++ +   A      L   +L  +  VG ++AQ++V+F+  P N  
Sbjct: 612 AKVLATHYVSLDAF-RKASMAAAKGGSTSLAYGALTHIDGVGPVLAQSLVDFWGEPANAS 670

Query: 624 AVEALL----------KEVSPSIGRHEKNV-------------------SSEIENKKLVF 654
            V  ++          +   PS  R                         + +   K++F
Sbjct: 671 IVSEIIANGVVVLDAAESSKPSSTRQPPAAPLSSATSAASTKPAEYSAPGANLTGAKILF 730

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ 713
           TGT+    R      +    A V + LS KT  ++ G   G +KL KA  LGV I++   
Sbjct: 731 TGTVDGYPRETVHRLIESASAEVVSSLSSKTTCVLAGSGAGPAKLAKASALGVPIIDAAD 790

Query: 714 FLFLLQQ 720
           F+  L +
Sbjct: 791 FILALDR 797


>gi|312962450|ref|ZP_07776941.1| DNA ligase [Pseudomonas fluorescens WH6]
 gi|311283377|gb|EFQ61967.1| DNA ligase [Pseudomonas fluorescens WH6]
          Length = 789

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 210/627 (33%), Positives = 338/627 (53%), Gaps = 48/627 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P+L   + P     
Sbjct: 4   AHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELVTRDSPT---Q 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130
           ++G     +  +V H IP LSL   ++   + +F  R+         +      ++ ++ 
Sbjct: 61  RVGSAALSAFTQVRHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC 120

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           EPK+DG  +++ Y+ G+ V  A RGDG +GED+S  +R +  IP ++     P  +EVRG
Sbjct: 121 EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLEVRG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV++SK  F  LN   + VG K +ANPRNAA+G LR+L+     +R L F  +G+G+ + 
Sbjct: 181 EVFMSKAGFERLNASQLDVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQVTA 240

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +      L++++  G P+++ ++ A      + YY ++ + R++LPY+IDG+V+KV+ 
Sbjct: 241 DISDTHIGNLKQLQQWGMPISHELKLAKGIQECLDYYRDIGARRNSLPYEIDGVVFKVNS 300

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G  +
Sbjct: 301 IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R   A+  
Sbjct: 361 SNATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVSVVTERRPEHARAV 409

Query: 429 SFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             P  CP+C S V R   +    GK      A +RC G LAC AQ  + + HFVSR A +
Sbjct: 410 QIPESCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMD 469

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG + ++     +     I  PAD++ L+  Q      I ++ GF D+S   L  +I
Sbjct: 470 IDGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFADISSKKLITAI 519

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +  +L RFI++LGI  VG E A+ LA+   S +   + +  ++ +          +P
Sbjct: 520 EHSKAPTLARFIYALGIPDVGEETAKVLARSLASLERVRKALPEVLTY----------LP 569

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALL 629
            VG  +A  I  F+++  N   + ALL
Sbjct: 570 DVGLEVAHEIHSFFEDSHNQQVIGALL 596



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L   +  L +  VG   A+ LA  + S +   +           DWL + +   + +
Sbjct: 618 STTLGGLLDKLHVPSVGPGAAQKLADKFTSLEGVIKA----------DWLDMRQA--LPE 665

Query: 607 IIAQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQ 662
             A+A+ +F+ N  N     A+E  LK+        +K V    E     V TG+L+ + 
Sbjct: 666 KQAKAVRDFFDNADNANRALAIEQQLKDFGMHWQSEKKVVEGLPEAGHTWVLTGSLELMS 725

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R  A+E +  LGA V+  +S KT  ++ G   GSKL KA +LG+K+++EE F+  L ++N
Sbjct: 726 RDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLAKHN 785


>gi|161507068|ref|YP_001577022.1| DNA ligase [Lactobacillus helveticus DPC 4571]
 gi|190359262|sp|A8YTZ3|DNLJ_LACH4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160348057|gb|ABX26731.1| DNA ligase [Lactobacillus helveticus DPC 4571]
          Length = 668

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 228/714 (31%), Positives = 388/714 (54%), Gaps = 63/714 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++++A+KE +SL  ++    D YY    P + D+ YD    R   +  AFP++     P
Sbjct: 4   ITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPEIVT---P 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GGE++    KV H IP LS+  +++ ++L++F  R+    QK   + + + +E
Sbjct: 61  DSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRM----QKLVGHPVEYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y+ GK V A+ RG+G+ GEDV+A  R I  IP+VL    P  IEVRGE 
Sbjct: 117 LKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPE--PLTIEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSEI 249
           Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++  +    EI
Sbjct: 175 YMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPREI 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            +  Q++ +++M  LGF  N   R+      +  + +E  + R++L Y IDG+V KVD+ 
Sbjct: 235 TS--QHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SL++QLG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  + 
Sbjct: 293 SLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVA 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DY+             + +R+GD V + +AG++IP++ ++++++R  D+ P+ 
Sbjct: 353 RASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLSKRPADSVPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG +
Sbjct: 402 IPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMNIAGLGPK 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I+  +  S
Sbjct: 455 IVKQLI-AKDLVHNV---ADLYHL------TEDDLAQLDHFKEKSINNLLTAIDNSKKNS 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E  I  LGI HVGA+ AR +A+ +       + +  I++    D  S   +  +G   A
Sbjct: 505 VELLITGLGIDHVGAKAARLIAQKF-------KNLEKIMSLGVQDIAS---IDTIGMTTA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTLQKI 661
           +++  ++  P      + L++E+  S      +G  E   + +   ++K +V TG L+  
Sbjct: 555 ESMTTYFAQPE----AQKLIEELRESGLNMDYLGADEPEEAPDNPFKDKTVVLTGKLEHY 610

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            R +  + +  LGA V+  +S KTD +I G + GSK  KA+QLGV ++ EE+ +
Sbjct: 611 TRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEAI 664


>gi|300856841|ref|YP_003781825.1| DNA ligase [Clostridium ljungdahlii DSM 13528]
 gi|300436956|gb|ADK16723.1| DNA ligase [Clostridium ljungdahlii DSM 13528]
          Length = 664

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 233/702 (33%), Positives = 371/702 (52%), Gaps = 49/702 (6%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L++ I+YH+D YY    P + D EYD L +    I    P++     P+ P   +GG 
Sbjct: 8   NELKKIINYHNDRYYNQDNPEVSDYEYDMLMQELKNIEREHPEVIT---PDSPTQHVGGN 64

Query: 82  MNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
               S   V H +P LSL  ++N ED+ +F+  +     K     + F +E KIDG  + 
Sbjct: 65  AKRESGVLVRHRVPMLSLRDVFNKEDVEQFVDDV-----KAQFPDVEFVVETKIDGLSMA 119

Query: 141 IRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +RYE GK + A  RGDG   GEDV+   + I  + + L   IP  +E+RGEVY++K  F 
Sbjct: 120 LRYEDGKLITAITRGDGIVYGEDVTVNAKVINDVVKSLKDKIP-YLEIRGEVYMTKQAFE 178

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM 257
            +N+    +G+K +ANPRN A+G LR+L+ + +T  R L+ F+  +     +  K   E 
Sbjct: 179 NVNEHQELLGKKVFANPRNCAAGTLRQLD-SKVTKERNLSLFIFNVQDVRGMEFKTHTEG 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            + ++  G  V        T   I      +   R  L YDIDG V K++  + + +LG 
Sbjct: 238 YEFLKKQGIKVIENYTVCKTTGEIWDAIERIGENRGDLDYDIDGAVIKINNLAYRTELGS 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++ P+W I++K+  ++  T+LLDI + +GRTG +TPVA  EP+ + G  ++ ATLHN+D
Sbjct: 298 TSKVPKWAIAYKYPPEEKETKLLDIQLTVGRTGRITPVAIFEPIRLCGTSVSRATLHNQD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           +I  L           D+ VGD ++V ++GE+IPK+  +I  +R      F FP  CP+C
Sbjct: 358 FIDEL-----------DVGVGDTIVVYKSGEIIPKIKKVIHEKRPEGTVKFQFPDKCPVC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S V R+      +  A  +CT  + C +  ++R+ +FVSRD  +I+G G   ++     
Sbjct: 407 GSPVARE------EGAADIKCT-NINCPSMLVKRIINFVSRDCMDIKGFGAAYVEQLV-- 457

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
            D  +   IP DI+ L   +       E I+G  + +   L D+I   +    +R + SL
Sbjct: 458 -DKGYIDDIP-DIYHLNEYRDKLVE--EGIIG-KEKNTDKLLDAIENSKKNEPQRLLASL 512

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG   A+ L KY+ S       I+N+I   N D   + +V  +GDI A AI E+++
Sbjct: 513 GISNVGKSTAKELMKYFKS-------IDNLI---NADIDEIKKVSDIGDISASAIFEYFK 562

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           N  N+  +  L K     +    K   + +E  K V TGTL  + R +A+E + + G  V
Sbjct: 563 NEDNLKIISELAKCGVNMVMNENKEEDNLLEGSKFVITGTLPSMGRTEAKELIEKHGGKV 622

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S  +S+KT  ++ GD PGSK+ KAQ+LGVK+++E + L +L+
Sbjct: 623 SGSVSKKTTYVLAGDAPGSKVTKAQELGVKVISEAELLQMLK 664


>gi|229591993|ref|YP_002874112.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens SBW25]
 gi|254781395|sp|C3JXX6|DNLJ_PSEFS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|229363859|emb|CAY51325.1| DNA ligase [Pseudomonas fluorescens SBW25]
          Length = 785

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 217/627 (34%), Positives = 342/627 (54%), Gaps = 51/627 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  Y+   +P I D+EYD L     A+    PDL   + P     
Sbjct: 4   AHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPT---Q 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130
           ++G     +  +V H IP LSL   ++   + +F  R+         +      ++ ++ 
Sbjct: 61  RVGSAALSAFTQVKHDIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC 120

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           EPK+DG  +++ Y+ G+ V  A RGDG +GED+S  IR +  IP ++     P  +EVRG
Sbjct: 121 EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNIRTVRNIPLKLHGSGWPATLEVRG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV++SK  F  LN   + VG K +ANPRNAA+G LR+L+     +R L F  +G+  T++
Sbjct: 181 EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGV--TTD 238

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           I +      LQ+++  G P+++ ++ A      + YY ++   R++LPY+IDG+V+KV+ 
Sbjct: 239 I-SDTHIGNLQQLKKWGMPISHELKLAKGIQDCLDYYRDIGERRNSLPYEIDGVVFKVNS 297

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G  +
Sbjct: 298 IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV 357

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D         +V R G  + +GD V+++RAG+VIP+VV ++   R  +A+  
Sbjct: 358 SNATLHNMD---------EVARLG--LMIGDTVIIRRAGDVIPQVVSVVPERRPENARAV 406

Query: 429 SFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             P  CP+C S V R   +    GK      A +RC G LAC AQ  + + HFVSR A +
Sbjct: 407 QIPESCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMD 466

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG + ++     +     I  PAD++TL+  Q      I ++ GF D+S   L  +I
Sbjct: 467 IDGLGDKTIEQLVDEK----LIGSPADLYTLKYEQ------IIDLEGFADISSKKLITAI 516

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +  +L RFI++LGI  VG E A+ LA+   S +   + +  ++ +          +P
Sbjct: 517 ENSKTPTLARFIYALGIPDVGEETAKVLARSLASLERVQKALPEVLTY----------LP 566

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALL 629
            VG  +A  I  F+++  N   + ALL
Sbjct: 567 DVGLEVAHEIHSFFEDSHNQDVIGALL 593



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 16/180 (8%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L   +  L +  VG   A+ LA  +++ +   +           DWL + +   + +
Sbjct: 615 STTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKA----------DWLDMRQA--LPE 662

Query: 607 IIAQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQ 662
             A+A+ EF+ N  N     A+E  LK+        +K V    E     V TG+L+ + 
Sbjct: 663 KQAKAVREFFDNADNANHALAIEQQLKDFGMHWDSEKKVVEGLPEAGHTWVLTGSLELMS 722

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG+K+++EE F+  L ++N
Sbjct: 723 RDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLAKHN 782


>gi|298372045|ref|ZP_06982035.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274949|gb|EFI16500.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058]
          Length = 670

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 225/708 (31%), Positives = 370/708 (52%), Gaps = 54/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +EI  H+  YY  + P I D E+D   ++ +++  A+P+     D N P  ++
Sbjct: 8   QQIIKLRKEIEAHNHAYYVDNNPTISDFEFDMRLKQLESMEKAYPEYF---DKNSPTQRV 64

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGT 137
           G ++  S  ++ H  P LSL   ++  ++ +F  R+     +K  N+ F    E K DG 
Sbjct: 65  GSDLTKSFKQIVHQYPMLSLANTYSEGEVTEFYNRV-----RKSLNTDFDVVCELKYDGA 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G+   A  RGDG  G+DV+A IR I +IP  L  + P   E+RGEV +    
Sbjct: 120 SISLIYENGELAAAVTRGDGVRGDDVTANIRTIQSIPIRLCGDFPSRFEIRGEVLMPFAV 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEIFAKGQY 255
           F  LN E    G   +ANPRNAASG L+  NP+++ R    ++  + LG+  E+ A+  Y
Sbjct: 180 FDELNREKAENGEPLFANPRNAASGTLKLQNPSEVARRRLDSYLYYLLGE--ELPAETHY 237

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + +   +  GF ++N +R   +   I  +     + R  LP   DG+V KV++   Q+ L
Sbjct: 238 DNMMAAKTWGFKISNAIRCCRSLDEIFDFIRYWDTERRNLPVATDGIVLKVNDLRQQRNL 297

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++K+  ++A TRL  +  Q+GRTG +TP+A LEPV + G  +  A+LHN
Sbjct: 298 GLTAKSPRWAIAYKYQAERALTRLNSVSYQVGRTGAVTPIANLEPVLLSGTTVKRASLHN 357

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I GL           D+ +GD V V++ GE+IPK+  +    R        FP  CP
Sbjct: 358 ADIIAGL-----------DLHIGDMVFVEKGGEIIPKITGVDTEAREAYMPKVVFPQCCP 406

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S +VR+ +       AAH C     C  Q   ++ HFVSR A +I GLG + +   F
Sbjct: 407 ECGSALVRNEDE------AAHYCPNEDHCPPQIKGKILHFVSRKAMDIIGLGDETIALLF 460

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       +   ADI+ L+       + I  +   G+ S  N+ D I   + I     IF
Sbjct: 461 EKS----LVGNVADIYELK------ISDIAPLERLGEKSAQNIVDGIEASKQIPYPNVIF 510

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR+VG  +A+ LAK + S +   +               LI+V  +G++IA+++V++
Sbjct: 511 ALGIRYVGETVAKRLAKAFPSIEQLEEAT----------LEQLIQVDEIGEVIARSVVDY 560

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +    +   + + LK     +   E+  ++S+ +E K +V +G   K  R + ++ + Q 
Sbjct: 561 FAKEEHRQLI-SRLKAAGIRLAADEQPGHISALLEGKTVVISGVFAKHSRDEYKDMIEQN 619

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G   S  +S KT  ++ GDN G +KL+KAQ+LG++++ E++FL ++ +
Sbjct: 620 GGKNSGSISAKTSFVLAGDNMGPAKLDKAQKLGIRLVTEDEFLEMIAK 667


>gi|160934306|ref|ZP_02081693.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753]
 gi|156866979|gb|EDO60351.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753]
          Length = 661

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 233/711 (32%), Positives = 369/711 (51%), Gaps = 53/711 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +E ARK    L ++++YH   YY+   P I D EYD + R  + I  A+P+L  +ED 
Sbjct: 1   MDLENARKSAEELRKKLNYHAKKYYEEDNPEITDYEYDMMLRELEGIELAYPELV-TED- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++GG        VTH +P  SL   ++ E+L  F  ++     K     + + +E
Sbjct: 59  -SPTQRVGGAALNKFTPVTHEVPMESLHDSFSEEELFDFDRKVREVVPK-----VSYVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  +++ Y  G FV  + RGDG  GEDV+  +R I TIP+ L+  +P  +EVRGEV
Sbjct: 113 PKFDGLSVSLEYRNGIFVRGSTRGDGSVGEDVTENLRTIKTIPKKLTRAVP-FLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+S   FL L +       KP+ NPRNAA+G LR+ + + IT  R L+ +V  + +   +
Sbjct: 172 YMSNESFLKLLERQELNEEKPFKNPRNAAAGSLRQKD-SRITAQRELDIYVFNIQQIEGV 230

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF         +    +V     +   R    + +DG V KV+ F
Sbjct: 231 VLNTHKESLDYLTELGFHTPPFYNCYDDMDDVVKEIQRIGEQRGGFSFPVDGAVIKVNAF 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             ++ +G  ++ P+W  + K+  ++  T LLDI+I +GRTG+LTP    EPV + G  ++
Sbjct: 291 HDRELIGSTSKFPKWAEAFKYPPEEKETALLDIEINVGRTGVLTPTGLFEPVLLAGTTVS 350

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNED+IK            +DIR+GD V++++AGE+IP+VV   V    PD++P+ 
Sbjct: 351 RATLHNEDFIK-----------EKDIRIGDTVVLRKAGEIIPEVVS--VKAHKPDSKPYQ 397

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S+V R+         AA RC     C AQ L  L HFVSRDA ++EGLG  
Sbjct: 398 MPEHCPSCGSKVQREPGE------AALRCD-NTQCPAQLLRHLIHFVSRDAMDMEGLGPA 450

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+     +     +  P D+++L +       ++      G+ S  NL +++ K +   
Sbjct: 451 VLEQLVAHQ----LVSSPVDLYSLNKEALVDLERM------GEKSAENLLNAVEKSKGND 500

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RFI++LGIRH+G   A+ L + + +       I+ I+    ++   +  +   G I+A
Sbjct: 501 FYRFIYALGIRHIGLRAAKLLTQRFPT-------IDQILKAPPEE---IAAIDGFGQIMA 550

Query: 610 QAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++   ++  P     +++   K V+      E++       K  V TG L    R +A +
Sbjct: 551 ESAAYYFSLPETRKLIDSFRTKGVNLESFEKEESKDLRFSGKTFVLTGALPTYTRAEAGK 610

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   G  VS+ +S+KT  ++ G+  GSKL KAQ+LGV I++EE+FL +LQ
Sbjct: 611 MIEDRGGKVSSSVSKKTSFVLAGEEAGSKLTKAQKLGVPIISEEEFLAMLQ 661


>gi|325690880|gb|EGD32881.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK115]
          Length = 652

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 234/701 (33%), Positives = 370/701 (52%), Gaps = 61/701 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  R+     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRV-----RKEFPQVSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQADSQE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++L
Sbjct: 229 EVLNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +P   PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV---SVTNLYDSINKRRNISLER 552
                   ++  A I+ L          +EN+L  G+    S   LY +I   +  S ER
Sbjct: 450 AQN----LVKDVAGIYRL---------TVENLLELGNFKEKSANKLYTAIQASKENSAER 496

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++
Sbjct: 497 LLFGLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSL 546

Query: 613 -VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
              F Q    I   E     V+      +    + +    +V TG LQK+ R++A+E + 
Sbjct: 547 HTYFEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQ 606

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            LGA VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 607 SLGANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647


>gi|91216495|ref|ZP_01253461.1| DNA ligase [Psychroflexus torquis ATCC 700755]
 gi|91185289|gb|EAS71666.1| DNA ligase [Psychroflexus torquis ATCC 700755]
          Length = 667

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 227/707 (32%), Positives = 374/707 (52%), Gaps = 55/707 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +L QE+  H+  YY    P I D ++D        +    P+    +DPN P  ++G
Sbjct: 6   QIENLRQELHEHNYKYYVLDAPEISDYDFDMKLNALQELEKTHPEY---KDPNSPTMRVG 62

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE+  +   V H  P  SL   ++ EDL  + TR+    QK  +  + FT E K DG  I
Sbjct: 63  GEVTKNFKTVVHDFPMYSLSNSYSKEDLEDWQTRV----QKIIEEPVEFTCELKYDGASI 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           ++ YE G+F+ A  RGDG  G++V+  ++ I ++P ++   N P   ++RGE+ +    F
Sbjct: 119 SLTYEDGEFLRAVTRGDGTQGDEVTHNVKTIRSVPLKLKGDNYPRRFDIRGEIVLPYKGF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQYE 256
             +N E + +G +PYANPRN  SG L+  +  ++  R L   ++ L  T E +    Q E
Sbjct: 179 AKMNAERVELGEEPYANPRNTTSGSLKLQDSAEVAKRPLLCLLYNL--TGENLGVSTQME 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L K R  GF V    +   +   + +Y N     R  LPY+ DG+V KV+    Q++LG
Sbjct: 237 SLNKSREWGFNVPKEAKLTKSIDEVFAYINYWDEHRHDLPYETDGVVIKVNSLQQQEELG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW +++KF  +Q ST L  I  Q+GRTG +TPVA L+P+ + G  +  A+LHN 
Sbjct: 297 YTAKSPRWAMAYKFKAEQVSTTLNQITYQVGRTGAITPVANLDPIQLAGTTVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCP 435
           D I+ L           DIR GD V V++ GE+IPK++ +   +R  + +QP  +   CP
Sbjct: 357 DQIEKL-----------DIREGDVVFVEKGGEIIPKIIGVDFKKRDSESSQPTVYLKECP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C++ + R    K G+  A H C     C  Q + R++HF+SR A +IEGLG + +    
Sbjct: 406 ECETPLER----KEGE--ALHFCPNTEGCPPQIIGRIQHFISRKAMDIEGLGGETVALLV 459

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + +     I   AD++TL++       ++       + S  NL   +   ++I  ER ++
Sbjct: 460 RED----LIEDYADLYTLRKEDVLPLERM------AEKSAVNLIKGVEASKDIPFERVLY 509

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            LGIR+VG  +A+ L K + S    A   + N++A           V  +G+ IAQ++V+
Sbjct: 510 GLGIRYVGETVAKKLVKAFKSIDVLASASLENLVA-----------VDEIGERIAQSVVD 558

Query: 615 FYQNPRNICAVEALLK-EVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F+++  N   ++ L    ++  I   E +  S+ + +  LV +G   K+ R + Q+ + +
Sbjct: 559 FFKDDANKLRIDRLRNYGLNLEISEEEMEGQSNTLIDLTLVISGVFLKVSRRELQDLIEK 618

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G   ++ +S+KTD ++ G+N G SKL KA+ LGVKI+ E++FL ++
Sbjct: 619 HGGKNTSSISKKTDYLVAGENMGPSKLAKAENLGVKIITEDEFLTMV 665


>gi|116669859|ref|YP_830792.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24]
 gi|166215392|sp|A0JUH2|DNLJ_ARTS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116609968|gb|ABK02692.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24]
          Length = 790

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 224/734 (30%), Positives = 378/734 (51%), Gaps = 63/734 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E  +L +E+  H   YYQ   PII D+E+D L RR + I    P+L  ++ P     +
Sbjct: 52  REEYENLVEEVRKHRFAYYQEDAPIISDAEFDELFRRLETIEAMHPELVANDSPT---QE 108

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI--FFTLEPKID 135
           +GGE++ +   V H     SLE ++++E+L  +I +      K  + +    +  E KID
Sbjct: 109 VGGEVSAAFAAVEHLQRMYSLEDVFSLEELESWIAKAEASVAKLGNGTAGPAWLTELKID 168

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           G  + + Y  GK V AA RGDG++GED++  +  I  IP+ L+  N P  +EVRGEV+I 
Sbjct: 169 GLAVNLLYRDGKLVRAATRGDGYTGEDITHNVLTIKEIPQQLTGGNYPAEMEVRGEVFIP 228

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F   N+ +I  G+ P ANPRNAA+G LR+ +P +   R L  +VHG+G    +    
Sbjct: 229 SKAFAEYNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPLRMYVHGIGAREGLRTVS 288

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q +  +++   G P +       +   I+ +       R +L ++IDG+V KVD+F+ Q+
Sbjct: 289 QSDTYRQLAEWGLPTSPYFEVLGSLKDILDFIKRYGDKRHSLTHEIDGIVVKVDDFATQR 348

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +R PRW +++K+  ++  T+LLDI + +GRTG +TP   +EPV + G+ +  ATL
Sbjct: 349 ALGYTSRVPRWAVAYKYPPEEVHTKLLDIAVNVGRTGRVTPFGIMEPVKVAGSTVGMATL 408

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV---NERHPDAQPFSF 430
           HN+D +K            + +++GD V++++AG+VIP++V  ++   +++ P  + F  
Sbjct: 409 HNQDVVKA-----------KGVKIGDIVVLRKAGDVIPEIVGPVLALRDQQDPPVRDFVM 457

Query: 431 PSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           P+ CP C +     L P K G +    RC    +C AQ  ER+ H  SR AF+IE LG +
Sbjct: 458 PTECPACGT----PLAPGKEGDVDI--RCPNSRSCPAQLRERVFHVASRGAFDIEALGWE 511

Query: 490 QLDFFFKSEDPAFS-IRIPADIFTL-------------QRRQQTSTTKIENILGF----- 530
                 +  +P    +   A++F L             +R +  +T + E +  F     
Sbjct: 512 AAIALTQPAEPVTPPLTSEANLFRLTREDLADVRIRREKRSKGVATGEFELVPYFYTKGT 571

Query: 531 ------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
                    +   L+  + K ++  L R + +L IRHVG   +R+LA  + S     +  
Sbjct: 572 AKSPSKPTATTEKLFTELEKAKSQPLWRVLVALSIRHVGPRASRALATAFGSMDAIREAS 631

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +AH          V  VG +IA A+ E++    +   V+   ++        +++  
Sbjct: 632 EEELAH----------VDGVGPVIAAALKEWFAEDWHREIVDTWAEDGVRMEDEQDESTP 681

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TG+L+   R +A+E +   G   S  +S+ T  ++ G+N G+KL+KA+QL
Sbjct: 682 RTLEGLTVVVTGSLEGFSRDEAKEAILIRGGKASGSVSKNTSYVVAGENAGTKLDKAEQL 741

Query: 705 GVKIMNEEQFLFLL 718
           GV +++E+ F  LL
Sbjct: 742 GVPVLDEDGFRALL 755


>gi|323344237|ref|ZP_08084463.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269]
 gi|323094966|gb|EFZ37541.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269]
          Length = 665

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 226/711 (31%), Positives = 373/711 (52%), Gaps = 58/711 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L Q++  H+  YY  + P I D  +D +      +   +P +   +DPN P  +
Sbjct: 4   KQRISELRQQLHEHNYKYYVLNAPTISDQAFDFMMHELQDLEAKYPKM---DDPNSPTKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N    +V H  P LSL   +N +D+ ++  ++ R    ++        E K DG 
Sbjct: 61  VGSDLNSEFKQVAHKYPMLSLANTYNEQDVEEWFEQVARGLMGEE---FEVCCELKYDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196
            I++ Y  G+ V    RGDG  G+DV+  ++ I  IP VLS N  P   E+RGE+ +   
Sbjct: 118 SISLTYVDGQLVQGVTRGDGIHGDDVTENVKTIRAIPLVLSGNDYPHEFEMRGEILMPWK 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEIFAKGQ 254
            F  LN E  A     +ANPRNAASG L+ LN   + +R+L+ +  + LG+  ++   G 
Sbjct: 178 VFEQLNAEREANEEPLFANPRNAASGTLKSLNSRLVASRHLDSYLYYMLGE--QLPTDGH 235

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE + K +  GF ++ G+R+  +   I  +     + R  LP   DG+V KV+    Q+ 
Sbjct: 236 YENMMKAKHWGFKISAGMRKVKSLQQIYDFIKHWDTERKNLPIATDGIVLKVNSLRQQRA 295

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A T+L+++  Q+GRTG +TPVA +EPV + G  +  ATL+
Sbjct: 296 LGYTAKSPRWAIAYKFKAERACTKLVEVTYQVGRTGAVTPVANMEPVKLAGTTVKRATLN 355

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D+IK             D+ VGD V V++ GE+IPK+V + +++R  DA+P SF + C
Sbjct: 356 NADFIKSF-----------DLHVGDYVYVEKGGEIIPKIVGVALDKRPADAKPISFITHC 404

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + + R      G+  AA+ C    AC  Q   R++HF++R A NI+ +G + +D +
Sbjct: 405 PECGTPLAR----YEGE--AAYYCPNDTACPPQIKGRIEHFIARKAMNIDSIGPETVDDY 458

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG--DVSVTNLYDSINKRRNISLER 552
           ++       I   AD++ +          +++I G G  + S   +   I   + +  ER
Sbjct: 459 YRRG----LIHNAADLYNI---------TVQDINGAGNREKSALKIVRGIASSKQVPFER 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGIR VG   AR +A+++           NI A        L  V  VG++IA+++
Sbjct: 506 VVFALGIRFVGETSARLIARHF----------KNIDALMEASLQDLTEVEGVGEVIAKSV 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           + ++ NP N   V A L+     +   E+     S ++  K +V +G      R + +  
Sbjct: 556 IAYFSNPINKEIV-ARLRNYGLQMALSEEQQAGSSDKLTGKSIVISGVFTHHSRDEYKAL 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + Q G      +S KT  ++ GDN G SKLEKA++LGV I++E+ FL +++
Sbjct: 615 IEQNGGKNVGSISGKTSFVLAGDNMGPSKLEKAERLGVPIISEDDFLKMIE 665


>gi|332366947|gb|EGJ44687.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1059]
          Length = 652

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 229/698 (32%), Positives = 370/698 (53%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  R+     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRV-----RKEFPQVSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++     +++ +  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            +L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++L
Sbjct: 229 AVLNKLAALGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +P   PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSLGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F Q   +I   E     V+      +    + +    +V TG LQK+ R++A+E +  LG
Sbjct: 550 FEQEGSHILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 610 ANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647


>gi|94984803|ref|YP_604167.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300]
 gi|122986680|sp|Q1J0I6|DNLJ_DEIGD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94555084|gb|ABF44998.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300]
          Length = 684

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 228/707 (32%), Positives = 365/707 (51%), Gaps = 60/707 (8%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L  EI  H+  YY+   P I D EYD L R   A+  A P+       N P   +GG  
Sbjct: 26  ALRAEIERHNRAYYELDAPEIPDDEYDRLVRELRALEAAHPEWVAE---NSPAQTVGGAP 82

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITI 141
           + +   V H  P  SL+ +++ E+L ++  ++ R      D+  F +T E KIDG  + +
Sbjct: 83  SSAFLPVEHPTPMTSLDNVFSDEELAEWQEKLARALNLPPDHDGFTYTGELKIDGLSVNL 142

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            Y  G   +AA RG+G  GE V+  +  IP IPR L   +   +EVRGEVY+S+ DF A 
Sbjct: 143 YYADGVLQWAATRGNGRVGEMVTEQVLTIPGIPRALP-GLTGELEVRGEVYLSRADFAAF 201

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           N     +G     NPRN A+G LR+ +P    TR+L    + LGK   +  + Q E+L  
Sbjct: 202 NARAEELGLPLLKNPRNGAAGALRQKDPEVTRTRHLKALFYSLGKHDGVPVRTQGEVLAW 261

Query: 261 MRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +   GFP +   R + TF G+     Y+  M + R+   +D DG V K+D  +LQ + G 
Sbjct: 262 LAEQGFPTS---RYSETFTGLQAAADYHRRMTAQRAQFEFDADGTVLKLDSLALQAEAGS 318

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW +++KF  ++  T L  I + +GRTG L P+A L P  I G+ ++ ATLHNED
Sbjct: 319 TSRAPRWAVAYKFPVEEVETVLESITVNVGRTGKLAPLAHLSPRLIEGSTVSKATLHNED 378

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI+ L           D+R+GD V+V+++G VIP+++ +++ +R PDA P+ FP+ CP C
Sbjct: 379 YIRDL-----------DLRIGDTVVVRKSGGVIPQIMRVVLEKRPPDAAPYRFPTHCPEC 427

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
              VVR           A+      AC AQQ ERL++FVSR A ++ G+G++ ++    +
Sbjct: 428 GHEVVRAEG-------DANTYCPNPACPAQQFERLRYFVSRGAMDVRGVGEKLIEQLLAT 480

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +   AD++ L   Q  S  +       G+    N+   +   +   L R I +L
Sbjct: 481 ----GLVHDAADLYQLTAEQLASLER------SGEKKAANILAQLEASKTRPLWRLINAL 530

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI HVG   A++LA+ + +       ++ ++A   +   S+  VP +G  IAQ++     
Sbjct: 531 GINHVGERNAQALARAFGT-------LDALLAATPE---SIEAVPGLGRTIAQSVSAALA 580

Query: 618 NPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +P     +  L    LK V  +  R +      +     V TGTL +  R + +  +   
Sbjct: 581 DPSMQDLIRRLRERGLKPVEETAPRGDA-----LAGLSFVLTGTLSR-PRDEIKARLESA 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           GA V+  +++KT  +I G+  GSKL++A++LG+ +++E     LL++
Sbjct: 635 GARVTGSVTKKTSYLIAGEEAGSKLDRARELGIPVLDEAGLGALLEE 681


>gi|325102906|ref|YP_004272560.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145]
 gi|324971754|gb|ADY50738.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145]
          Length = 670

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 225/713 (31%), Positives = 377/713 (52%), Gaps = 50/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S+ + ++++ +L  E++ H+  YYQ + P I D E+D   +  + +    P   R + P
Sbjct: 1   MSLFEIKEKIDALVTELNRHNYNYYQLAMPTISDYEFDQKLKELEKLEQENPAFIRIDSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+GGE+  +   VTH  P LSL   +N +DL  F  RI    +K   ++  +  E
Sbjct: 61  T---QKVGGEITKTFKTVTHKWPMLSLGNTYNEQDLVDFDQRI----RKIIGDNFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
            K DG  I++ YE G  + A  RGDG  G++V+  I+ I TIP R+    I    E+RGE
Sbjct: 114 LKFDGLSISLTYENGDLIRAVTRGDGTKGDEVTTNIKTIRTIPHRIKGEGILPSFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           V++ K  F  LN E I  G +P+ANPRN ASG ++  N  ++  R L+ F++ L    + 
Sbjct: 174 VFMHKAAFEKLNQERIENGEQPFANPRNFASGTVKMQNSAEVAKRPLDCFLYFLYADKKP 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           F    +E L  +   GF ++   +       +  +       R  L YDIDG+V KV+ +
Sbjct: 234 FPT-HWESLHAVEKWGFKISQESKLCKNLAEVFDFITYWDQERFKLSYDIDGIVIKVNSY 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q++LG  A+SPRW IS+KF   +  T L+++  Q+GRTG +TPVA L+PV + G  + 
Sbjct: 293 AQQEELGFTAKSPRWAISYKFKAAEVETELIEVTYQVGRTGAVTPVANLKPVLLAGTTVK 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + I+ L           D+  GD VLV++ GE+IPK++ + +++R  DAQ   
Sbjct: 353 RATLHNANEIERL-----------DLYEGDTVLVEKGGEIIPKIMGVNLDKRKSDAQKIH 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           + + CP C + +VR    K G+  A H C     C  Q + +++HF+SR   NI+G+G +
Sbjct: 402 YITHCPECGTELVR----KVGE--AVHYCPNDEGCRPQIIGKMQHFISRKVMNIDGIGDE 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++  +      F IR  +DI+ L++ + +    ++ +  FG+ SVTN+   I   + + 
Sbjct: 456 TIETLYSK---GF-IRHISDIYNLKQDEDS----LKQMDRFGEKSVTNMLLGIENSKQMP 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            E+ +F LGIR+VG  +A+ LA ++ + QN            +  +  LI    +G+ IA
Sbjct: 508 FEKVLFGLGIRYVGETVAKKLALHFKNIQNL----------QHASFEQLIEAEEIGERIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKA 666
           Q+I+E++ +  +I  +  L+          EK V   S  +  +  + +G  +   R + 
Sbjct: 558 QSILEYFSDETHINEINKLIT-YGLQFEIEEKEVILQSESLLGQTFLISGVFENHSREEL 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           ++ +   G  + + +S K + ++ GDN G SKLEKA +L + I++E+    LL
Sbjct: 617 KKIIEDNGGKMLSSISAKLNYLVAGDNMGPSKLEKANKLNIPIISEQDLFNLL 669


>gi|254495534|ref|ZP_05108458.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152]
 gi|85819890|gb|EAQ41047.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152]
          Length = 665

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 222/697 (31%), Positives = 372/697 (53%), Gaps = 50/697 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E++ H+  YY      I D E+D   +  D +    P      D N P  ++GG + 
Sbjct: 10  LRNELNRHNYNYYVLDNATISDFEFDIKLKELDKLEQENPLFF---DANSPTQRVGGTIT 66

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
            +   V H     SL+  ++ +DL  +  RI +     +   I +T E K DG  I + Y
Sbjct: 67  KNFNTVVHKNRMYSLDNSYSKDDLLDWEKRIQKILGTTE---ISYTCELKYDGASINLTY 123

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E G+F+ A  RGDG  G++V+  I+ I +IP  +  +     E+RGE+ +  + F  +N 
Sbjct: 124 ENGQFIKAVTRGDGFQGDEVTNNIKTILSIPLSIQDDFVSNFEMRGEIILPLDGFNKMNQ 183

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
           E +A G + Y NPRN ASG L+  +  ++  R L+  ++ +  T E   K  +E L++ R
Sbjct: 184 ERVANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQV-VTEERKYKTHFESLEQAR 242

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
            +GF V   ++  N+   +  + N   + R  LPY+ DG+V KV+    Q++LG  +++P
Sbjct: 243 KVGFKVPKTIKLVNSIDEVFEFVNLWDTKRQDLPYETDGIVIKVNNLQQQEELGYTSKAP 302

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW I++KF  +Q +T L +I  Q+GRTG +TPVA L+PV + G  +  A+LHN D I+ L
Sbjct: 303 RWAIAYKFKAEQEATLLNEITYQVGRTGAITPVANLDPVQLAGTTVKRASLHNADQIEKL 362

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                      D+R+ D V V++ GE+IPK+V +  ++R  +++P  + + CP C + +V
Sbjct: 363 -----------DVRINDTVFVEKGGEIIPKIVGVDFSKRPENSEPTVYATNCPECGTELV 411

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           R          A H C     C+ Q   R++HF+SR A +I+GLG + +D   K      
Sbjct: 412 RTAGD------AKHYCPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEG---- 461

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            I+  AD++ L      +  K+  +    + S  NL + I K + I  E+ +F+LGIR V
Sbjct: 462 LIQNYADLYEL------TVEKVLPLERIAEKSAKNLINGIEKSKEIPFEKVLFALGIRFV 515

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G  +A+ LAK++ S       I+N++A    D+ +L+ V  +GD IAQ+I++F  N  +I
Sbjct: 516 GETVAKKLAKHFKS-------IDNLMAA---DFETLVAVDEIGDRIAQSIIDFSSNLTSI 565

Query: 623 CAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
             V   LKE    +       +N + +++ +  V +G   ++ R + ++ +   G  VS+
Sbjct: 566 QLVNR-LKEAGLQLSVSAESLENQTDKLKGQIFVVSGVFHQMSRTELKKAIEDNGGKVSS 624

Query: 680 ILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
            +S+KT+ I+ GDN G SKL KA+ LG++I++E+ F+
Sbjct: 625 SISKKTNFIVAGDNMGPSKLAKAETLGIQIISEQDFI 661


>gi|71892277|ref|YP_278011.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|123747814|sp|Q492G5|DNLJ_BLOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71796383|gb|AAZ41134.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 595

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 214/630 (33%), Positives = 348/630 (55%), Gaps = 54/630 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L +++ + +  YY  ++  + D +YDA+  + + +   +P L     P     
Sbjct: 4   VKQKIQKLRKKLRHWEYLYYTKNESAVSDEKYDAMLEKLNQLEQIYPHLIAESSPT---Q 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +IGG    +  K+ H +P LSL  I     L  F  RI    +   ++ + +  E KIDG
Sbjct: 61  RIGGVSQYNFKKIHHKVPMLSLNSIVASFQLLSFDKRIK--IKLHANHVMSYCCELKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN------IPEIIEVRGE 190
             +++ Y++GK +YAA RGDG  GEDV+  I  I  +P  L ++      +P ++E+RGE
Sbjct: 119 VAVSLLYKEGKLIYAATRGDGKIGEDVTENISTIRAVPMCLKIDSNKYGKLPYLLEIRGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-- 247
           V+ISK  FL LN   I  G KP++N RNAASG LR+L+P+   TR L+F+ +G+      
Sbjct: 179 VFISKLCFLELNKITIQQGNKPFSNARNAASGSLRQLDPSVTATRPLSFYCYGISNYCGE 238

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      +E LQ     G P+NN +R  +  + ++ YY+ +K+IRS L ++IDG+V KV+
Sbjct: 239 KELPDSHWERLQLCENWGLPINNYIRLISGVNKVLEYYSYIKTIRSNLEFNIDGIVIKVN 298

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             + Q +LG  +R+P W +++KF  + +S ++ ++  Q+GRTGI+TP+A LEP+ I    
Sbjct: 299 SCAYQSKLGCGSRAPHWALAYKFPSEVSSAKVDNVIFQVGRTGIITPIAYLEPIVISDVT 358

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I    +HN + +K L            + +GD V ++R+G+VIPK+V++I++ER    + 
Sbjct: 359 IRKVNMHNINEVKRL-----------GLMIGDTVRIQRSGDVIPKIVEVILSERTDHVKT 407

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P FCP+C SR+      KT +  +  RCT GL+C AQ+   L+HFVS+ A NI G+G
Sbjct: 408 IELPRFCPVCGSRI------KTWRNQSILRCTAGLSCLAQRKATLEHFVSKKAMNIYGMG 461

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +D    ++   F+    +D+F L +       K+  + GFG  ++  L  SI   + 
Sbjct: 462 NKIIDQLV-NQGLIFT---SSDVFRLNK------NKLLCLEGFGLENIERLLRSIEDSKK 511

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           I+L RFI++LGI  VG  +A +LA  Y + +N A            D  SL  +  VG I
Sbjct: 512 ITLARFIYALGIYGVGETVASNLAIVYKTIENLAAA----------DLQSLSNLKYVGPI 561

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
           IA  I  F++NP N+  V+ L   + P+IG
Sbjct: 562 IANNIYHFFRNPDNLKNVQDL---IDPAIG 588


>gi|294815250|ref|ZP_06773893.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
 gi|326443605|ref|ZP_08218339.1| NAD-dependent DNA ligase LigA [Streptomyces clavuligerus ATCC
           27064]
 gi|294327849|gb|EFG09492.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 767

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 240/740 (32%), Positives = 370/740 (50%), Gaps = 73/740 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR+  + L ++I  H   YY   +P+I DSE+D L R  + +    P L     P+ P 
Sbjct: 49  RARERHAELAEQIEEHRFRYYVKDQPVISDSEFDRLLRSLEELEERHPALC---TPDSPT 105

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G+    L KV H    LSL+  ++ E+L  +  R+ R     D     F  E K+D
Sbjct: 106 QKVAGQYETDLAKVEHRERMLSLDNAFDEEELTAWAERVEREVGSPD---FHFLCELKVD 162

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YEKG+   AA RGDG  GED++  IR I  +P R+    IPE++E+RGEVY  
Sbjct: 163 GLAVNLTYEKGRLTRAATRGDGRIGEDITPNIRTIADVPDRLRGDRIPELVEIRGEVYFP 222

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
            + F  LN+  IA G +PYANPRN+ASG LR+ +P    T  L+  VHG+G         
Sbjct: 223 MDQFQQLNERRIAAGEQPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAREGFDIDC 282

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
                  +R  G P     R  ++  G+  +       R ++ ++IDG+V K+DE  LQ 
Sbjct: 283 LSHAYDLLREWGLPTARHNRVVDSLEGVREFIAHYGENRHSMEHEIDGVVVKLDEIPLQG 342

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I+ K+  ++ +TRL+DI + +GRTG +TP A++EPV + G+ +  ATL
Sbjct: 343 RLGSTARAPRWAIAWKYPPEEVNTRLVDILVGVGRTGRVTPYAQVEPVQVAGSEVEFATL 402

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D +K            + + +GD V++++AG+VIP+++  +V  R    + F  P+ 
Sbjct: 403 HNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVELRDGTEREFVMPAE 451

Query: 434 CPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           CP C +    +L P K G +    RC    +C AQ  ERL +   R + +IE  G     
Sbjct: 452 CPECGT----ELRPMKEGDV--DLRCPNARSCPAQLRERLFYLAGRRSLDIEHFGYVAAA 505

Query: 493 FFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTKIENILGFG 531
              +  +PA   ++   D+F+L                    +R  +T   KI  +  F 
Sbjct: 506 ALTRPLEPAEPPLKDEGDLFSLTVEQLLPIRAYVLDPDSKLPKRDPKTGEEKIATV--FA 563

Query: 532 DVSVTNLYDSINKRRNIS------LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           +       +++   RNI       L R +  L IRHVG   A +LA+ + S Q   +   
Sbjct: 564 NQEGEPRKNALAMLRNIEAAKTRPLARVLTGLSIRHVGPVAAEALAREFRSVQRIQEATE 623

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
             +A              VG IIA ++ +++    +    E L K  +  +   E+    
Sbjct: 624 EELAATEG----------VGAIIAASLKQWFAEEWH---QEILRKWEAAGVRMAEEGADE 670

Query: 646 E-----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
           E     +E   +V TGTLQ   R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +K
Sbjct: 671 EQGPRPLEGVTVVVTGTLQDYTRDGAKEALQSLGAKVTGSVSKKTAFVVVGDNPGSKFDK 730

Query: 701 AQQLGVKIMNEEQFLFLLQQ 720
           A QL V ++ E+ F  LL+Q
Sbjct: 731 AMQLKVPVLREDGFTLLLEQ 750


>gi|167752039|ref|ZP_02424166.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216]
 gi|167660280|gb|EDS04410.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216]
          Length = 712

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 229/709 (32%), Positives = 367/709 (51%), Gaps = 49/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+++  L + + YH+  YY  + P I D E+D L R    +  A P+ A   DPN P  +
Sbjct: 13  REKIEELRRTLDYHNHKYYVENSPEISDREFDVLMRELQELEAAHPEYA---DPNSPTAR 69

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++      V H  P LSL   +++++L +FI RI     +K+     F  E K DGT
Sbjct: 70  VGSDLTTEFQSVEHRFPMLSLGNTYSLDELHEFIGRI-----EKELGQTEFVCELKFDGT 124

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE G  + A  RGDG  G+DV+A IR I TIP  L   + P+  E+RGEV +   
Sbjct: 125 AISLTYEHGALLRAVTRGDGTRGDDVTANIRTIRTIPLHLQGGDYPDFFEIRGEVLMPYA 184

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E    G    ANPRNAA+G L++ +   +  R L+  ++ L    ++     +
Sbjct: 185 SFDRLNREREENGEPLLANPRNAAAGTLKQQSSAVVAQRGLDCTLYQLAG-DDLPCTTHW 243

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E ++K    GF V++ +R   +   I  Y       R  LP+  DG+V KV+ ++L+++L
Sbjct: 244 ECMRKASEWGFNVSDKMRICRSQAEIDDYIAFWDEERRKLPFATDGVVIKVNSYTLRREL 303

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++PRW ++ KF  +QA TRL  +D Q+GRTG +TPVA L+PV + G  +  ATLHN
Sbjct: 304 GFTAKAPRWAVAFKFKAEQALTRLESVDFQVGRTGAITPVANLDPVQLAGTTVKRATLHN 363

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            + I  L           DIRVGD V V++ GE+IPK+  + +  R  D++PF + + CP
Sbjct: 364 AEQIALL-----------DIRVGDMVYVEKGGEIIPKITGVDLAARPADSRPFQYITRCP 412

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +V+      G+  + H C     C  Q L R+ HF+ R A +IEGLG++ ++  F
Sbjct: 413 ECGTPLVK----YEGE--SKHYCPNQSHCRPQILGRIIHFIRRKAMDIEGLGEETVELLF 466

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           ++      +   AD++ L+  Q     ++      G+ S  N+  SI     +  +R +F
Sbjct: 467 ENG----LLHDIADLYDLRAEQLACLPRL------GEKSAENIIRSIRGSVEVPFQRVLF 516

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A+ LA ++ +         + + H   +   LI    VG  IA AI+++
Sbjct: 517 ALGIRFVGETTAKYLAAHFRTL--------DAVMHATRE--ELIEADEVGGKIADAIIDY 566

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + +  N+  +E L K    +   H+   S  +  K  V TG      R + +E +   G 
Sbjct: 567 FADAENLRIIERLRKAGLQTEAAHKALESESLAGKNFVITGRFSGHSRDELKELIEAHGG 626

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
              A +S   D ++ G+  G +KL+KA +LGV++++EE+ L ++    T
Sbjct: 627 KNLAAVSANVDFLVAGEKIGPAKLQKATKLGVRLISEEELLAMIASGGT 675


>gi|111225216|ref|YP_716010.1| DNA ligase [Frankia alni ACN14a]
 gi|122953782|sp|Q0RDH8|DNLJ_FRAAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|111152748|emb|CAJ64491.1| DNA ligase [Frankia alni ACN14a]
          Length = 771

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 231/728 (31%), Positives = 371/728 (50%), Gaps = 61/728 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P  A S+   R   + L +E+  H   YY    P + D+EYD L R   A+    P+L  
Sbjct: 51  PAVAASVAD-RARAAELARELDEHAYRYYVLDSPTVSDAEYDRLMRELTALEEHHPEL-- 107

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  K+ G  +     V H    LSL+ +++ ++   +  R  R  + + D    
Sbjct: 108 -RTPDSPTQKVAGSYSTLFTPVEHLERLLSLDNVFDDDEFHLWAARAAR--ETEVDG--- 161

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186
           +  E KIDG  + + YE+G+ V AA RGDG +GED++  IR + ++P R+   ++PE++E
Sbjct: 162 WLCELKIDGLAVDLVYEEGRLVRAATRGDGRTGEDITPNIRTLASVPTRLRGASVPELLE 221

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           VRGEV+     F  LN  ++A G KP+ANPRNAA+G LR+ +P    TR L+  VHGLG 
Sbjct: 222 VRGEVFFPTEKFAELNASLVAGGGKPFANPRNAAAGSLRQKDPRVTATRPLDMIVHGLGA 281

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                A  Q     +    G PV+       +   ++++ +     R  + ++IDG+V K
Sbjct: 282 QRGFDAASQSAAYARFAEFGLPVSTHFEVLASVGDVLAFIHRWGRARHDVEHEIDGVVVK 341

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD F+LQ++LG  +++PRW ++ K+  ++ +T+L DI + +GRTG +TP   LEPV + G
Sbjct: 342 VDAFALQRRLGSTSKAPRWAVAFKYPPEEVTTKLRDIRVNVGRTGRVTPFGELEPVLVAG 401

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN D +           G + + +GD V++++AG+VIP++V  +V+ R    
Sbjct: 402 STVGLATLHNVDEV-----------GRKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGTE 450

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P+ CP C + +VR   P+    +   RC    AC AQ  E + H  SR+A +I+G
Sbjct: 451 RAFVMPTHCPECGTELVR---PEGEVDI---RCPNTDACPAQLRELIFHLASRNALDIDG 504

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +      +++     +    DIF L      +    E + GFG   +  +   +   
Sbjct: 505 LGYETAIALLEAD----RVGDIGDIFHL------TPESFEGLRGFGQKKIDQILRGVEAA 554

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R+  L R +  L IRHVG   AR+LA+          E+ ++ A        L  V  VG
Sbjct: 555 RHRPLWRLLVGLSIRHVGPTAARALAR----------ELRSLDAIAAAPAEQLAAVEGVG 604

Query: 606 DIIAQAIVEFYQNPRN------ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
             IA A+V+++ + R+      I A  A L +   + G         ++   +V TGTL 
Sbjct: 605 PKIASAVVDWFADARHRDIVARIAAGGASLADAGAAEG------PRPLDGVAVVITGTLD 658

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
              R  A E V   G  V+  +S+KT  ++VG +PG +K +KA+ LGV +++E  F  LL
Sbjct: 659 GWSRDSATEAVQGRGGKVTGSVSKKTAFVVVGADPGAAKYDKARSLGVPVLDEAGFAVLL 718

Query: 719 QQYNTTLR 726
           ++     R
Sbjct: 719 ERGADAAR 726


>gi|213618983|ref|ZP_03372809.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 544

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 204/565 (36%), Positives = 326/565 (57%), Gaps = 44/565 (7%)

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  
Sbjct: 3   PDSPTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCC 60

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           E K+DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRG
Sbjct: 61  ELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRG 120

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KT 246
           EV++ +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  + 
Sbjct: 121 EVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEG 180

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E+       +LQ  +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 181 GELPDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 239

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 240 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 299

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 300 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 348

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 349 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 402

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 403 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 452

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +          A   D+   L +VP VG 
Sbjct: 453 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 502

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE 631
           ++A  +  F+    N   +  LL E
Sbjct: 503 VVATHVFNFFAEESNRDVIGQLLAE 527


>gi|154492286|ref|ZP_02031912.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC
           43184]
 gi|154087511|gb|EDN86556.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC
           43184]
          Length = 666

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 234/712 (32%), Positives = 375/712 (52%), Gaps = 58/712 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++ +L + +  H+  YY  S P I D E+D + +    +  + P+ A   DP+ P  +
Sbjct: 4   KDKIKALREALEQHNYNYYVLSAPTISDREFDEMMKELQVLEESHPEYA---DPHSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136
           +G +++    +V H  P LSL   ++ ++++ F  RI R     D N  F    E K DG
Sbjct: 61  VGSDLSKEFEQVVHKYPMLSLGNTYSEDEVKDFYERIAR-----DLNEPFEIVAELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
           T I++ YE G+ V A  RGDG  G+DV+A ++ I ++P +++    P   E+RGE+ +  
Sbjct: 116 TSISLTYEDGRLVRAVTRGDGTRGDDVTANVKTIRSVPLKLMGDRYPATFEIRGEILLPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN-FFVHGLGKTSEIFAKG 253
            +F  LN E        +ANPRNAASG L++ NP  +  R L+ +F + LG+  E+ A+ 
Sbjct: 176 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAVVAARKLDAYFYYLLGE--ELPAET 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ L+  R  GF + N +R  N+   I  Y       R  LP   DG+V KV+    Q+
Sbjct: 234 HFDNLEAARSWGFKIPNVIRVCNSLEDIYGYIAYWDVERKNLPVATDGIVLKVNSLRQQR 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G  +  A+L
Sbjct: 294 NLGFTAKSPRWAIAYKFQAERAVTRLNSVSFQVGRTGAVTPVANLEPVLLAGTTVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432
           HN D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F  
Sbjct: 354 HNADIIEGL-----------DLHLGDKVFVEKGGEIIPKIVGVDVEARGLLVGDKVRFIR 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + ++R      G+  AAH C     C  Q   +++HFV+R A NI  +G + ++
Sbjct: 403 SCPECGTPLMR----PEGE--AAHYCPNEAGCPPQIKGKIEHFVTRRAMNI-NMGPETVE 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++    A  I+  AD++TL+         +  +  + D S  NL  S+ + + +  ER
Sbjct: 456 DLYE----AGYIKDTADLYTLE------IADLLRLERWADKSARNLMASLEESKQVPFER 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            ++ LGIR VG  +A+ L   + S +   Q            +  L  V  +G+ IA++I
Sbjct: 506 VLYGLGIRFVGETVAKRLVSAFHSMEQLEQA----------SFEDLTAVDEIGERIARSI 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           + ++ + RN   V   LKE    +   E+   N S +++   +V +GT  K  R + +  
Sbjct: 556 IAYFADERNRTLVNR-LKEYGLQMSVPEEKLANRSEKLKGLSIVISGTFAKHSRDEYKAM 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + Q G   S  +S KTD I+ GDN G +KLEKA +LGVKI+NE++FL ++ +
Sbjct: 615 IEQHGGKNSGSVSGKTDYILAGDNMGPAKLEKAAKLGVKIINEDEFLNMIAE 666


>gi|319638552|ref|ZP_07993314.1| DNA ligase [Neisseria mucosa C102]
 gi|317400301|gb|EFV80960.1| DNA ligase [Neisseria mucosa C102]
          Length = 822

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 259/819 (31%), Positives = 400/819 (48%), Gaps = 174/819 (21%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R  +A+    P+L   + P+ P  ++GGE      +V H +P
Sbjct: 22  YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLSGFAEVRHEVP 78

Query: 95  TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148
            LSL   ++ +D         +Y F ++     +     + +EPK DG  I++ Y  G  
Sbjct: 79  MLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLNGEKPEYVIEPKFDGLAISLLYRDGVL 138

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
             AA RGDG +GEDV+  ++ +  IP R+   NIPE+IE+RGEV + K DF ALN     
Sbjct: 139 TQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPELIEIRGEVLMLKADFAALNARQAE 198

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264
            G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    F A+   + L   + L
Sbjct: 199 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGFIAEEHLQELSYCKEL 257

Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           GF + +G      F  I   +++Y +M+  R TLPY+IDG+V KV+  + Q++LG  +R+
Sbjct: 258 GFSLPDG--NFGCFPNIDKVLAFYEQMQQKRPTLPYEIDGMVIKVNSLTQQRELGFISRA 315

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG  +TNATLHN+D +  
Sbjct: 316 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 375

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-------------------- 421
                      +D+RVGD V+V+RAG+VIP+VV +I   R                    
Sbjct: 376 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQEANVTVSDGLQDDLFAK 424

Query: 422 -------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
                   P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ + L H
Sbjct: 425 TPSETQAKPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRAQGLIH 478

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQR-----------RQQ 518
           F SR A +I+GLG++Q++     +     +R  AD++     TLQ+            ++
Sbjct: 479 FASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKEMADKASANEEE 534

Query: 519 TSTTKIENILG-FGDVSVT------------NLYDSINKRRNISLERFIFSLG------- 558
            S ++I +  G  G+  +             N+   I   +   L RF+F+LG       
Sbjct: 535 PSNSEIGDFEGETGNTLLAKNNKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGER 594

Query: 559 --------------IRH-----------VGAEIARSLAKYYLSY---------------- 577
                         +RH           +G  +A S+A ++                   
Sbjct: 595 TAKTLAQAFGTLEHVRHAPEPILACLPDIGTVVAHSIAHFFAQEAQQAMIDELLAVGVVP 654

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVP--------------LVGDIIA-----QAIVEFYQN 618
           Q+ A  I  +       W++  R+P              L G  I      +A+   +Q 
Sbjct: 655 QSQAVTIPPLRHAEPQRWIA--RLPDFKISETKALALWELAGQSIEGLQTDKALPADWQA 712

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSE---------IENKKLVFTGTLQKIQRHKAQEY 669
            R+     ALL+ +     +   N+  E         +  K  V TGTL  ++R +AQ  
Sbjct: 713 WRSKPQNAALLENMKTFFAQTLSNLQDETISDGINEAVAGKTFVLTGTLPTLKRDQAQAM 772

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           +   G  VS  +S+KTD ++ G+  GSKLEKAQ LG+ +
Sbjct: 773 IEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGIAV 811


>gi|295111571|emb|CBL28321.1| DNA ligase, NAD-dependent [Synergistetes bacterium SGP1]
          Length = 683

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 238/700 (34%), Positives = 369/700 (52%), Gaps = 45/700 (6%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L +E+++H   YY    P I D+EYDAL R    +  A PD  R   P+ P  ++GG
Sbjct: 21  MAELYEELAHHARLYYDEDAPEIPDAEYDALVRELAELERAHPDRVR---PDSPTRRVGG 77

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +     KV H  P LSL+ +++  +L  F+ RI R    +DD +  FT E KIDG  ++
Sbjct: 78  TVLEGFEKVRHERPMLSLDNVFSAGELSSFLERI-RGDVPEDDWT--FTCEMKIDGLAVS 134

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YE G+FV  A RGDG  GEDV+  +R + T+P  L       +EVRGEV ++ + F A
Sbjct: 135 LLYEDGRFVRGATRGDGRVGEDVTENLRTLRTLPMRLKGAPAGRVEVRGEVLMTWDRFNA 194

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           LN+    +G  P+ANPRNAA+G +R+L+   +  R L+ F++ L     +    Q + L+
Sbjct: 195 LNERREELGEPPFANPRNAAAGTMRQLDSRIVAERGLDAFLYYLVDAPSLGVTRQGDALE 254

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +   G P+    R+  +     ++  E +  R +LPY  DG V K+D+ +L   LG  A
Sbjct: 255 WLAERGLPIQPAWRRCASLAEAEAFIVEWQERRFSLPYVTDGAVVKLDDLTLWDGLGATA 314

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
            +PRW +++K+  ++A TR+L ID+ +GRTG LTPVA LEPV + G ++  A LHNED I
Sbjct: 315 HAPRWAVAYKYPPEEARTRILSIDVSVGRTGALTPVANLEPVRLAGTVVQRAGLHNEDEI 374

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           +            +D+RVGD V V++A E+IP+VV +    R    +PF  P  CP C S
Sbjct: 375 R-----------RKDVRVGDVVRVRKAAEIIPEVVAVEKECRTGAERPFEMPERCPACGS 423

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
             VR  +       A  RC    +C AQ  E L++F SR   +I GLG++  +    S  
Sbjct: 424 EAVRLPDE------AVLRCPNRASCPAQLKEGLRYFASRAGLDIRGLGERLAEQLIDS-- 475

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               ++  +D++ L      S  ++      G+ S  NL  ++   ++  L   I +LGI
Sbjct: 476 --GRVKTLSDVYDLPEEDWASLDRM------GEKSARNLMGALEASKDRPLSALIAALGI 527

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           R VG  +A  LA+ + S    +      IA           V  VG +IA ++  F+++ 
Sbjct: 528 RFVGRRVAELLAERFGSMDALSAASEAEIAD----------VEGVGPVIASSVEAFFRDE 577

Query: 620 RNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            N+  VE L +  ++ S G    +  +E+E K  VFTG L  ++R +A+  V   G   S
Sbjct: 578 ANLALVERLRERGLNFSSGDAAGHEGTELEGKSFVFTGELSSMKRAEAEALVRAHGGSAS 637

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +S KT  ++ G   GSK  +A++LGV I++EE FL ++
Sbjct: 638 GSVSSKTSFLVAGAGGGSKRRRAEELGVPIVSEEDFLRMI 677


>gi|254390812|ref|ZP_05006024.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
 gi|197704511|gb|EDY50323.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 730

 Score =  360 bits (923), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 240/740 (32%), Positives = 370/740 (50%), Gaps = 73/740 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR+  + L ++I  H   YY   +P+I DSE+D L R  + +    P L     P+ P 
Sbjct: 12  RARERHAELAEQIEEHRFRYYVKDQPVISDSEFDRLLRSLEELEERHPALC---TPDSPT 68

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G+    L KV H    LSL+  ++ E+L  +  R+ R     D     F  E K+D
Sbjct: 69  QKVAGQYETDLAKVEHRERMLSLDNAFDEEELTAWAERVEREVGSPD---FHFLCELKVD 125

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YEKG+   AA RGDG  GED++  IR I  +P R+    IPE++E+RGEVY  
Sbjct: 126 GLAVNLTYEKGRLTRAATRGDGRIGEDITPNIRTIADVPDRLRGDRIPELVEIRGEVYFP 185

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
            + F  LN+  IA G +PYANPRN+ASG LR+ +P    T  L+  VHG+G         
Sbjct: 186 MDQFQQLNERRIAAGEQPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAREGFDIDC 245

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
                  +R  G P     R  ++  G+  +       R ++ ++IDG+V K+DE  LQ 
Sbjct: 246 LSHAYDLLREWGLPTARHNRVVDSLEGVREFIAHYGENRHSMEHEIDGVVVKLDEIPLQG 305

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I+ K+  ++ +TRL+DI + +GRTG +TP A++EPV + G+ +  ATL
Sbjct: 306 RLGSTARAPRWAIAWKYPPEEVNTRLVDILVGVGRTGRVTPYAQVEPVQVAGSEVEFATL 365

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D +K            + + +GD V++++AG+VIP+++  +V  R    + F  P+ 
Sbjct: 366 HNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVELRDGTEREFVMPAE 414

Query: 434 CPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           CP C +    +L P K G +    RC    +C AQ  ERL +   R + +IE  G     
Sbjct: 415 CPECGT----ELRPMKEGDV--DLRCPNARSCPAQLRERLFYLAGRRSLDIEHFGYVAAA 468

Query: 493 FFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTKIENILGFG 531
              +  +PA   ++   D+F+L                    +R  +T   KI  +  F 
Sbjct: 469 ALTRPLEPAEPPLKDEGDLFSLTVEQLLPIRAYVLDPDSKLPKRDPKTGEEKIATV--FA 526

Query: 532 DVSVTNLYDSINKRRNIS------LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           +       +++   RNI       L R +  L IRHVG   A +LA+ + S Q   +   
Sbjct: 527 NQEGEPRKNALAMLRNIEAAKTRPLARVLTGLSIRHVGPVAAEALAREFRSVQRIQEATE 586

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
             +A              VG IIA ++ +++    +    E L K  +  +   E+    
Sbjct: 587 EELAATEG----------VGAIIAASLKQWFAEEWH---QEILRKWEAAGVRMAEEGADE 633

Query: 646 E-----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
           E     +E   +V TGTLQ   R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +K
Sbjct: 634 EQGPRPLEGVTVVVTGTLQDYTRDGAKEALQSLGAKVTGSVSKKTAFVVVGDNPGSKFDK 693

Query: 701 AQQLGVKIMNEEQFLFLLQQ 720
           A QL V ++ E+ F  LL+Q
Sbjct: 694 AMQLKVPVLREDGFTLLLEQ 713


>gi|82523684|emb|CAI78466.1| NAD-dependent DNA ligase [uncultured candidate division WS3
           bacterium]
          Length = 667

 Score =  360 bits (923), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 234/704 (33%), Positives = 360/704 (51%), Gaps = 46/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR  ++ L + I +HD  YY  + P I D EYDAL     A+    P+L  ++ P     
Sbjct: 7   ARARVAELRELIRHHDRKYYVDAAPEIADGEYDALMSELAALEREHPELVTADSPT---R 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++ G  +     V H++P LSLE  ++ E+L  F  R+ +    +    + + +EPK+DG
Sbjct: 64  RVAGAPSDGFSTVEHAVPMLSLENTYSPEELVAFDARVRKGLPGE---PVEYVVEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISK 195
             I++RY +G    A  RGDG  G+DV+A +R I +IP  LS    P  +EVRGEV++ +
Sbjct: 121 VSISLRYVEGSLDVAVTRGDGERGDDVTANVRTIRSIPSALSGRRAPATVEVRGEVFMPR 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
           + F  LN   I     P+ NPRNAA+G L+  +P++   R L    + +   +      Q
Sbjct: 181 SGFEELNGRRIEAEEAPFVNPRNAAAGSLKLRDPSEAAKRPLTAIFYQVAGPAAARIATQ 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E ++ M   GFPV+  V  A      V         R  L YDIDG V KV+    Q +
Sbjct: 241 WEAIELMGDWGFPVSPDVALARDVDAAVEACLAWDERRGGLDYDIDGTVVKVNSLEQQAR 300

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF      T +L I++Q+GRTG LTPVA LEPV + G+ ++ ATLH
Sbjct: 301 LGSTAKSPRWGIAYKFPAVSVRTVVLGIEVQVGRTGKLTPVAVLEPVFVSGSTVSRATLH 360

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D I+ L           D+RVGD V +++ GEVIPKV  ++ + R    + F  P+ C
Sbjct: 361 NQDEIERL-----------DVRVGDTVEIEKGGEVIPKVARVVRSMRKGRPRRFRMPATC 409

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C   VVR      G++ A  RC G  +C  Q   R++HF SR A +I GLG   +   
Sbjct: 410 PACGEPVVR----PEGEVDA--RC-GNESCPGQAAGRIQHFASRGAMDIRGLGSALVATL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    +    D++ L      +  ++      G+ S  NL   + + ++    R +
Sbjct: 463 VAE----GLVSDYGDLYGLDAESLAALDRM------GERSAENLLAELEESKDRPFARVL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGIRHVGA  A+ LA  +   +  A      +A              +G +IA +I  
Sbjct: 513 HGLGIRHVGARAAQVLAARFTGMKELAAASEEELAETE----------EIGPVIAASIRS 562

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F ++PRN  A+  L        G      ++ +    +V TG+L+++ R +A E V + G
Sbjct: 563 FLESPRNKEALRKLETAGVNMRGGSTPGRATALAGLTVVLTGSLERMTREQAAEAVAEAG 622

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             VS+ +S KTD+++VG +PGSKL+KA +LG++ ++E +   +L
Sbjct: 623 GRVSSSVSSKTDLVVVGADPGSKLKKALELGIRTIDESELERML 666


>gi|295084199|emb|CBK65722.1| DNA ligase, NAD-dependent [Bacteroides xylanisolvens XB1A]
          Length = 666

 Score =  359 bits (922), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 235/713 (32%), Positives = 371/713 (52%), Gaps = 63/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P  +
Sbjct: 4   KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ +   
Sbjct: 117 SISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N + + +R L+ +++ L     +   G Y
Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK L
Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEDVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429
            D I+GL           D+ +GD V V++ GE+IPK+  +       DA+ F       
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP C S++VR      G+  AAH C    AC  Q   +++HF+SR A NI+GLG +
Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F++       I   AD++ L      +   I+ +   G+ S  N+   I + + + 
Sbjct: 454 TVDMFYR----LGLIENTADLYKL------TADDIKGLDRMGEKSAENIVTGIAQSKTVP 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IA
Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666
           Q+I+ ++ N  N   V   LKE    + R E+++S    ++  + +V +G      R + 
Sbjct: 554 QSILAYFANESNRELVNR-LKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEY 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +E + + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|303239321|ref|ZP_07325849.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2]
 gi|302593107|gb|EFL62827.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2]
          Length = 663

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 236/708 (33%), Positives = 368/708 (51%), Gaps = 56/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L + I YH+D YY      I D EYD L      +    P+LA +   N P  K
Sbjct: 4   KKRIEELRKTIEYHNDRYYNQDDAEISDYEYDQLSLELRKLEQEHPELALT---NSPTQK 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG     L KV H +P +SL+ +++ E++  F+ ++    Q+  D +  F +E KIDG 
Sbjct: 61  VGGTAKRELRKVQHDVPVISLQDVFSKEEVYSFVNKMI---QELGDPT--FVVERKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + +RY  G  V    RGDG  GE V   +  I +IPR +   +P  +EVRGEVY+S   
Sbjct: 116 SVVLRYNDGNLVEGITRGDGLVGESVYENLLEIQSIPRTIPTKLP-YLEVRGEVYMSAEA 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F   N +    G K Y   RN A+G LR+L+P  +  R L+ +V  L            E
Sbjct: 175 FEKANRKQEETGGKIYQTARNLAAGSLRQLDPGIVRERNLDIYVFNLEICQGKDFSSHSE 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +   GFP++       T   +    +++   R  L + IDG V KVD    +K+LG
Sbjct: 235 SLNWLSTQGFPISPEFMICKTADEVWECISKIGETRWQLSFGIDGAVVKVDSLDDRKRLG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++ PRW ++ K+  +Q  T + DI +Q+GRTG LTP+A L+PV I G  ++ ATLHN+
Sbjct: 295 ITSKVPRWAVAFKYPPEQKETVVEDIKVQVGRTGRLTPLAILKPVKIAGTTVSRATLHNQ 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DI++GD V++++AG++IP+V+  I  +R   A+ +  P  CP+
Sbjct: 355 DYID-----------SKDIQIGDTVIIQKAGDIIPEVLKSIPEKRPDTAKRYIIPDKCPM 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  +R+ +          RCTG  AC AQ +  + +F S+DA NIEG G   ++    
Sbjct: 404 CGAPALREEDG------VEIRCTGS-ACFAQAIRGVIYFASKDAMNIEGFGPSSVEALMS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  ADI+ L+  +    TK   I+G  + S+ NL  +I K ++  ++R I  
Sbjct: 457 E----GYIKDVADIYLLKDSRDELITK--GIVG-KEKSIDNLLKAIEKSKDNDIDRLITG 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
            GIR+VG + AR LA       NF Q+I ++    N  +  LI +P  GDI+ + I+EF+
Sbjct: 510 FGIRNVGKQTARVLA------ANF-QDIESL---ENATYDQLIVLPDFGDIMVKDILEFF 559

Query: 617 QNPRNICAVEALLKEVS------PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
               N+  + + LK+V        S+ + +   S     K  V TGTL  + R +A E +
Sbjct: 560 SKSENLLLI-SKLKQVGINMLSKASVNKKDDRFS----GKTFVLTGTLPSMTREEATELI 614

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              G  VS  +S++T  ++ G++ GSKL KAQ+LGV+++ EE+   +L
Sbjct: 615 QMHGGKVSGSVSKRTSYVLAGEDAGSKLAKAQELGVQVIGEEELKNML 662


>gi|330752433|emb|CBL87383.1| DNA ligase [uncultured Flavobacteria bacterium]
          Length = 663

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 225/704 (31%), Positives = 374/704 (53%), Gaps = 53/704 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+ +  L  E+  H+  YY    P I D E+D   ++   +   +P+L+   DPN P  +
Sbjct: 4   RELIFQLRNELRKHNHNYYVLDTPTISDFEFDIKLKKLQVLESQYPELS---DPNSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +   V H+    SL+  ++  DL  + +R+ R      D  + +T E K DG 
Sbjct: 61  VGGAVTKNFQTVFHAQRMYSLDNSYSKSDLLDWESRVKRAV----DGPVSYTCELKYDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I+I Y+ G    A  RGDG+ G+DV+A ++ I ++P VL  + PE  E+RGE+ +    
Sbjct: 117 SISITYKNGCLFRALTRGDGNKGDDVTANVKTIKSLPLVLQGDFPESFEIRGEIILPFKG 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL-GKTSEIFAKGQY 255
           F A+N + I+ G +P+ NPRN ASG L+  + +++ R  L   ++ + G+ + I  K QY
Sbjct: 177 FKAMNKQRISQGEEPFKNPRNTASGSLKLQDSSEVARRPLECLLYSIEGENTGI--KYQY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+K R  GF V    +  ++   ++ +       R  LPY+IDG+V KV++   Q +L
Sbjct: 235 ENLEKARMWGFKVPEEAQCVDSIEAVLKFIEHWDKARYDLPYEIDGIVVKVNDLQQQAEL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++PRW +++KF  +Q STRL  I  Q+GRTG +TPVA LE V + G ++  A+LHN
Sbjct: 295 GFTAKAPRWAMAYKFKAEQVSTRLNYISYQVGRTGAITPVANLEAVELAGTVVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L           D+RVGD V V++ GE+IPK++ + +++R   A    + S CP
Sbjct: 355 ADQILKL-----------DVRVGDAVFVEKGGEIIPKIIGVDLSKRILGASKTKYISECP 403

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C++ ++R    K G+  A H C   + C  Q + R++H++SR A +IEGLG + +    
Sbjct: 404 DCKTPLIR----KDGE--AQHYCPNTIGCPPQIIGRIQHYISRKALDIEGLGGETVAMLV 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  I+ PAD++TL+ +      ++         S  NL   +   + I  ER +F
Sbjct: 458 ----AAGLIKDPADLYTLEIKDLLPLERM------AQKSAENLIKGVQSSKQIPFERVLF 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR+VG  +A+ LAK+Y +    ++      A   D    L  V  +G  IA+++  F
Sbjct: 508 GLGIRYVGETVAKILAKHYKTVHALSE------ASVED----LEAVDEIGIKIAKSVYAF 557

Query: 616 YQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++N  +I  +  L     ++S S      N ++ +   ++V +G   ++ R++ +  +  
Sbjct: 558 FRNDVSIRLLSRLYSYGLQLSLS-DEVLANQTTLLTGHRIVVSGVFDQVSRNELKRLIEA 616

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
            G  V + +S KT  +I G N G SK +KA+ LG+ ++ E+ FL
Sbjct: 617 NGGKVVSSISSKTSYLIAGSNVGPSKRQKAENLGITVLTEQAFL 660


>gi|313114130|ref|ZP_07799682.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623539|gb|EFQ06942.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 666

 Score =  359 bits (922), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 232/719 (32%), Positives = 369/719 (51%), Gaps = 59/719 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L +EQA+K +  L   I  ++  YY    P + D EYDAL R    +   FP L  +
Sbjct: 1   MELLELEQAKKRVEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  K+GG  +  L KVTH++   SL   ++ ++LR F  R+     + +     +
Sbjct: 61  ---SSPTQKVGGTASSKLPKVTHAVKMESLLDAFSYDELRDFDRRVREAGIEPE-----Y 112

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG   ++ YE G+ V A+ RGDG  GEDV+A +RAI +IP+ L  + PE +EVR
Sbjct: 113 VVEIKIDGLSCSLEYENGELVRASTRGDGVVGEDVTANVRAIRSIPKKLK-DAPEFLEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+    F  L  E    G  P+ NPRNAA+G LR+ +     +R L+ FV  + +  
Sbjct: 172 GEVYMPHGAFQKLCAEQELQGAAPFKNPRNAAAGSLRQKDARITGSRGLSIFVFNVQQIR 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E L  ++ LG PV+      +     ++   ++   R+ L +D+DG V KV+
Sbjct: 232 GKTLTKHAESLDYLKSLGLPVSPRYHIVHDIEQAIAEIEQIGQNRAKLDFDMDGAVIKVN 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+ +  +G   + PRW I+ K+  +   T L  I++ +GRTG+LTP A  +PV + G  
Sbjct: 292 DFAQRDLMGSTNKFPRWAIAFKYPPEVKETTLRSIEVAVGRTGVLTPTACFDPVFLAGTT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHNED+I               + +GD + V++AG++IP+V+   V     DAQP
Sbjct: 352 VARATLHNEDFIHQF-----------GLCIGDTIQVRKAGDIIPEVIG--VTHHAEDAQP 398

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C + VV   +       AA RC     C AQ L  + HF SRDA +IEGLG
Sbjct: 399 YEMPTVCPSCGAPVVHLEDE------AALRCVNP-ECPAQALRNIIHFASRDAMDIEGLG 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                   + +     +   ADI+TL R Q  +  K      F + S  NL ++I   + 
Sbjct: 452 TAVATQLVEKD----MVHSAADIYTLTREQLLTLDK------FKEKSADNLLNAIEASKQ 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIRVPL 603
            +L++ +F  GIR++G + A  LA+++ + Q      A++I+ I     D +        
Sbjct: 502 NNLDKLLFGFGIRNIGDKAAALLAEHFGTLQAVREASAEQISEI-----DGF-------- 548

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            G ++AQ++VEF+        V   L +   ++    +    ++  K LV TGTL+ + R
Sbjct: 549 -GGVMAQSVVEFFAKEGTTDLVHR-LADAGLNMQWKGEPKGDKLAGKTLVVTGTLETLSR 606

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++A+  + + G   S  +S+KT  ++ G   GSKL KAQ LG+ ++ E +FL ++   N
Sbjct: 607 NEAEALIVKNGGKASGSVSKKTAYVVAGTAAGSKLTKAQVLGIPVLTEAEFLAMISDEN 665


>gi|161485980|ref|NP_737948.2| NAD-dependent DNA ligase LigA [Corynebacterium efficiens YS-314]
 gi|259506289|ref|ZP_05749191.1| DNA ligase [Corynebacterium efficiens YS-314]
 gi|259166069|gb|EEW50623.1| DNA ligase [Corynebacterium efficiens YS-314]
          Length = 678

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 230/711 (32%), Positives = 359/711 (50%), Gaps = 52/711 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q R+  + L +++ YH D YY   +P I D+++DAL R+   +    P+LA    P+ P 
Sbjct: 7   QLRRTWNELAEKVRYHRDLYYN-QQPEIPDADFDALFRQLQDLEEQHPELAV---PDSPT 62

Query: 76  NKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
            ++G  +    S   V H    LSL+ +++ E+LR ++ R           +  +  E K
Sbjct: 63  KEVGAPVTEQSSFDNVEHLERMLSLDNVFDEEELRDWLART---------PAKRYLTELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRG 189
           IDG  I + Y  G    AA RGDG  GED++A  R I  IP  L+      IP ++EVRG
Sbjct: 114 IDGLSIDLVYRNGMLERAATRGDGRVGEDITANARVIGDIPHELTATEEYPIPAVLEVRG 173

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EV+I   DF  +N + I  G KP+ANPRNAA+G LR+ NP D+  R L    HG+G +  
Sbjct: 174 EVFIPIEDFADVNAQRIEDGGKPFANPRNAAAGSLRQKNPEDVKKRRLRMITHGIGYSEG 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++    +   G P ++      T   +V         R    +++DGLV KVD+
Sbjct: 234 FQPASQHDAYLALAAWGLPTSSYTEAVETADAVVDKVLYWADHRHDALHEMDGLVIKVDD 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  +R+PRW I++K+  ++ +T+L+DI + +GRTG +TP A +EPV + G+ +
Sbjct: 294 IASQRALGSTSRAPRWAIAYKYPPEEVTTKLIDIKVSVGRTGRVTPFAMMEPVFVAGSTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+  +K         R G  + +GD V+V++AGEVIP+V+  +V  R    + F
Sbjct: 354 SMATLHNQSEVK---------RKG--VLIGDTVVVRKAGEVIPEVLGPVVELRDGTEREF 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C S     L P   +  A  RC    +C  Q  +RL +   R AF+IE LG+
Sbjct: 403 VFPEHCPECGST----LAPTRAE-DADWRCPNTRSCPGQLSQRLTYIAGRGAFDIEALGE 457

Query: 489 QQLDFFFKSEDPAFSIRI-PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +      ++      I +  A +F L       +       G  + S   L  ++ +R+N
Sbjct: 458 KGAQDLIRN-----GILVDEAGLFDLTEEDLLESDVYTTKAGAVNASGRKLLANLEQRKN 512

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R + +L IRHVG   AR+LA  Y S Q       + +A  +           VG I
Sbjct: 513 TDLWRVLVALSIRHVGPTAARALAGRYRSMQKLVDAPVDELAETDG----------VGMI 562

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IAQ+  ++++   +   V+              + +   +E   +V TG L+   R   +
Sbjct: 563 IAQSFKDWFEVDWHRAIVDTWAAAGVTMEDAETEQLEQTLEGLTIVVTGGLEGFTRDSVK 622

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +   G   S  +S+KTD ++VG+N GSK  KA++LG+ I++EE F+ LL
Sbjct: 623 EAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLTILDEEAFVRLL 673


>gi|260436246|ref|ZP_05790216.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109]
 gi|260414120|gb|EEX07416.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109]
          Length = 680

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 225/697 (32%), Positives = 355/697 (50%), Gaps = 49/697 (7%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P++ D+ YD L R    +    P L R   P+ P  ++GG+       V H +
Sbjct: 21  AYYVLDAPVMEDAVYDRLYRELLELEQNDPGLQR---PDSPTQRVGGDPAEGFTNVEHRV 77

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             LSL+  +N +DLR +  R+ +   + +D  +    E KIDG  + + Y  G    AA 
Sbjct: 78  GMLSLDNAFNRDDLRAWHERLLKVLDRPNDTRLPLVGELKIDGNALALSYRNGVLERAAT 137

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDG  GE+++A +R I +IP  L + N PE +EVRGE +I    F A+N E    G   
Sbjct: 138 RGDGSRGEEITANVRTISSIPLRLQIENPPEWVEVRGEAFIPDATFAAINAEREQRGEAL 197

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNA +G LR+L+P  +  R L+FF + L    +    GQ+  L+ +   GF VN  
Sbjct: 198 FANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPGDAQPPGQWAALEWLNTAGFRVNPN 257

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
                    I  + +  +  R  LPY  DG+V K+D   LQ + G   ++PRW I+ K+ 
Sbjct: 258 RELCGELAAIQRFCDHWEQGRHDLPYATDGVVVKLDNLQLQDEAGFTQKAPRWAIALKYP 317

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++A TRLL I  Q+GRTG +TPVA  E V + G  ++ ATLHN D I  L         
Sbjct: 318 AEEAPTRLLRIGAQVGRTGAITPVAEFEAVALAGTSVSRATLHNADRIAEL--------- 368

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+ +GD ++V++AGE+IP+VV ++   R  DA P   P  CP C S +VR+ +     
Sbjct: 369 --DLHLGDTIVVRKAGEIIPEVVRVLPELRPSDATPVQLPQQCPECGSNLVREGDE---- 422

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             AA RC    +C A     L+H+VS+ A +++GLG + ++   +       +   AD++
Sbjct: 423 --AATRCVNS-SCPAILRGGLRHWVSKSALDVDGLGSKLIEQLVER----GLVGSLADLY 475

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L      S  ++      GD S TNL +++   +     R ++ LGIRH+G   A++LA
Sbjct: 476 RLDAALLASLDRM------GDKSATNLVEALEASKQQPWHRQLYGLGIRHIGEVNAKALA 529

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK- 630
             + S       I+++ A   +    +  +  +G  I+ ++ ++ + P N   ++ L   
Sbjct: 530 AAFFS-------IDSLAAAALEAPEQIAELHGIGPEISASLGQWLRTPANQQLLQDLRSV 582

Query: 631 EVSPSIGRHEKNVSSE--------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
           E+S      E+  +S+        ++ K LV TGTL  + R +A+  +      VS  +S
Sbjct: 583 ELSLEASASEQEAASQAGADADGVLQGKTLVLTGTLPNLSRSEAKALIEAADGKVSGSVS 642

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +KTD ++ G+  GSKL KA+ LGV +++E     LLQ
Sbjct: 643 KKTDYLVAGEAAGSKLTKAESLGVTVLSEADLTALLQ 679


>gi|193213809|ref|YP_001995008.1| NAD-dependentDNA ligase [Chloroherpeton thalassium ATCC 35110]
 gi|254781288|sp|B3QSH0|DNLJ_CHLT3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193087286|gb|ACF12561.1| DNA ligase, NAD-dependent [Chloroherpeton thalassium ATCC 35110]
          Length = 684

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 231/724 (31%), Positives = 380/724 (52%), Gaps = 71/724 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A  ++ +L +EI+ H+  YY  +KP I D ++DAL R    +   +PDL     P+ P 
Sbjct: 5   EAEAKIRALRREINEHNYNYYNLAKPKISDYDFDALLRTLAELEAKYPDLV---TPDSPS 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE+  +   V H    LSL   +N+ +L  F+ R+ +  + +   +  FT E K D
Sbjct: 62  QRVGGEVTKNFPIVRHKTRMLSLSNTYNLGELGDFLARVAKSLESEGVQAYDFTAELKYD 121

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----------- 184
           G  +++ Y  G  V  A RGDG  G++++A ++ + TIP  L L  P             
Sbjct: 122 GVAVSLIYRDGLLVQGATRGDGSQGDEITANLKTVRTIP--LRLRAPASGSAFDTEKWNG 179

Query: 185 ---IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240
              IEVRGEV+++K DF  +N E      + +ANPRNA +G L++ +  ++  R L    
Sbjct: 180 SGDIEVRGEVFMTKADFEKINAERDE--SEQFANPRNATAGTLKQQDSREVAKRRLTMVA 237

Query: 241 HGL-GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           + L G+     + G  E L+K+  LGF      R   +   I ++ +E ++ R  L Y+I
Sbjct: 238 YYLDGRPFADLSHG--ERLEKLAELGFYTGEAHRTCRSLQDIQAFLDEWENKRDALAYEI 295

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG V K++    Q+ LG  ++SPRW I++K+A ++A T L ++  Q+GRTG +TPVA L+
Sbjct: 296 DGAVIKLNNVRYQELLGATSKSPRWAIAYKYAARRAETVLENVVFQVGRTGAITPVAELQ 355

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G++I+ +TLHN D I+ L           D+ +GDRV+++++G+VIPKVV ++  
Sbjct: 356 PVKLSGSVISRSTLHNLDEIRRL-----------DLHIGDRVIIEKSGDVIPKVVGVVAE 404

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R P+A+     S CP C + +    N         + C     C AQ+  RL HF SR 
Sbjct: 405 KRPPEARTIEPLSTCPSCGTPLEHPENE------VIYYCPNEFGCPAQRKARLVHFASRH 458

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG+  ++        A  I  P D++ +++   T+   +E    F + S  NL 
Sbjct: 459 AMDIEGLGEAVVEQLLG----AGLIGDPGDLYFIEK---TALLALER---FAEKSAQNLL 508

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           + I   ++ S ER IF+LGIR+VG   A  LA  + S       ++ I + +  +   L 
Sbjct: 509 NGIEASKSRSFERLIFALGIRYVGRRTASILADRFTS-------LDTIKSASQAE---LC 558

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVF 654
               +G+ IA+++  F+  P+    V+ LL ++  +  R   +  S           +VF
Sbjct: 559 ETEEIGETIAKSVALFFTKPQ----VQELLGKLERAGLRLASDKKSPDAPQTFAGMTVVF 614

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L+   R  A   V + G  V++ +S+KT +++ G   G KL KA++LGVKI+ E +F
Sbjct: 615 TGSLENFTRDDAAAKVGERGGKVTSTVSKKTSLVVAGKEAGGKLAKAEKLGVKIVTEAEF 674

Query: 715 LFLL 718
             +L
Sbjct: 675 QTML 678


>gi|324991571|gb|EGC23504.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK353]
          Length = 652

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 232/700 (33%), Positives = 374/700 (53%), Gaps = 59/700 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  R+     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRV-----RKEFPQVSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQADSQE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++L
Sbjct: 229 EVLNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EALEVPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F Q    I   E  L+E   ++    +  +++  +    +V TG LQK+ R++A+E +  
Sbjct: 550 FEQEGSQILLAE--LQEAGVNLDYLGQKAAADAVLSGMTVVLTGKLQKLTRNQAKEKLQS 607

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           LGA VS  +S+KTD+++ G + GSKL+KAQ+LG++I +E+
Sbjct: 608 LGANVSGSVSKKTDLVVAGQDAGSKLDKAQELGIEIRDED 647


>gi|224826983|ref|ZP_03700081.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002]
 gi|224600816|gb|EEG07001.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002]
          Length = 815

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 234/742 (31%), Positives = 389/742 (52%), Gaps = 90/742 (12%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQA + ++ L   ++ +   YY+  +P + D EYD L R  +A+  A P+L R++ P   
Sbjct: 12  EQAVQRIAELVPLLNRYSREYYERDEPTVPDVEYDRLYRELEALEAAHPELRRADSPT-- 69

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-------DNSIF 127
             ++GG        VTH++P LSL   ++  D   F  R     Q  +          + 
Sbjct: 70  -LRVGGAPLAEFSSVTHAVPMLSLNNAFSDLDAADFEQRHAELIQFDERVRKALGGAEVE 128

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186
           + ++PK DG  +++ Y  G  V  A RGDG SGE+V+  +R +  IP  L++ + P ++E
Sbjct: 129 YAVQPKFDGLAVSLLYRDGVLVQGATRGDGFSGENVTENLRTVRAIPLRLTIEHPPALLE 188

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL- 243
           VRGEV + K DF  LN E  A G K +ANPRNAA+G LR+L+ + IT  R L+FF + + 
Sbjct: 189 VRGEVLMLKRDFEQLNAEQAARGDKTFANPRNAAAGSLRQLD-SRITARRRLSFFAYAIA 247

Query: 244 ---GKTSEIFAKGQYEMLQKMRCLGFP-VNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYD 298
              G    +  + + + L +   LG P V   +R       G+ +YY  +   R++LPYD
Sbjct: 248 QVEGADWPVSHQAELDWLHR---LGIPLVPAELRPVVRGVAGLAAYYEAILRQRASLPYD 304

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV++ + Q+ LG  +R+PRW I+HKF  ++A T +  I+ Q+GRTG +TPVARL
Sbjct: 305 IDGVVYKVNDRAQQEALGFVSRAPRWAIAHKFPAEEALTLVEAIEEQVGRTGAITPVARL 364

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV +GG  +TNATLHNED ++            +D+RVGD V+V+RAG+VIP+VV +++
Sbjct: 365 KPVFVGGVTVTNATLHNEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVAVVL 413

Query: 419 NER---------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
             R                P    +  P+ CP+C S VVR+     G+ +A  RC+GGL 
Sbjct: 414 ERRPMRPVAGGDLFSSGDEPQHPAYRLPTACPVCGSHVVRE----EGEAIA--RCSGGLI 467

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLD-----FFFKSEDPAFSIRIPADIFTLQRRQQ 518
           C AQ+ + ++HF  R   +I+GLG++ +D      +  S    +++++ AD+  ++ R  
Sbjct: 468 CRAQRSQAIQHFAGRRMMDIDGLGERYIDNLVEFGYVNSVADLYTLQL-ADLLEMKHRAD 526

Query: 519 TSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
                +   +  G ++     NL  +I   R  +L R +F+LGIRHVG   A++LA +  
Sbjct: 527 ERDGVVPETVQKGQIATKWAENLLAAIAASRRPTLARLLFALGIRHVGESTAKTLADWLG 586

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
             +   +    ++A   D          +G ++A+AI +F+    N   +EALL+ V P 
Sbjct: 587 RLELIRRAPAPLLAALPD----------IGGVVAEAIADFFAEDNNETVLEALLRHVQPG 636

Query: 636 IGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-- 691
              H  +  ++  ++   L+    + ++   ++Q+   Q+  + +   S + +++ +   
Sbjct: 637 -DEHAPSPKLAERLQPAALLARLGIPRLTELRSQQLAGQIAGLAALAASERRELMQLDLP 695

Query: 692 -----------DNPGSKLEKAQ 702
                      D PG + E +Q
Sbjct: 696 ADVFNALADWLDEPGRRAELSQ 717



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP---RNICAVEALLKE 631
           L  Q  A +I  + A    +   L+++ L  D+   A+ ++   P     +  + +L+  
Sbjct: 666 LRSQQLAGQIAGLAALAASERRELMQLDLPADVF-NALADWLDEPGRRAELSQLASLVDS 724

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           +   +     + +  +E K LV TGTL  + R +A+E +   G  V+  +S+KT  ++ G
Sbjct: 725 ILADLPTQPSSANLLLEGKTLVLTGTLPTLSRDQAKELIEAAGGKVAGSVSKKTHYVVAG 784

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  GSKL KA++LGV +++E   L LL Q
Sbjct: 785 EAAGSKLAKAEELGVPVLDEAGLLALLDQ 813


>gi|229496499|ref|ZP_04390213.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406]
 gi|229316396|gb|EEN82315.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406]
          Length = 671

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 228/714 (31%), Positives = 376/714 (52%), Gaps = 58/714 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L  EI  H+  YY  S P+I D E+D L ++   +    P+L     P  P  ++
Sbjct: 6   ERIEQLRSEIEQHNYRYYVLSTPLISDVEFDRLMQQLIDLEAQHPELIT---PTSPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G + N S   V HS+P LSL   +N +++R+F  R++       + S+    E K DG  
Sbjct: 63  GSDRNPSFVSVRHSVPMLSLSNTYNYDEVREFWHRLH-----SGNGSLTLDCELKFDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           I + Y  G+   A  RGDG  G+DV+  IR I +IP R+L  NIP  +EVRGE+ +  ++
Sbjct: 118 IAVVYLNGELSQAITRGDGIEGDDVTNNIRTIRSIPLRLLGENIPPRVEVRGEILLPYDE 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY 255
           F  +N + +A G+ P+ANPRNAASG L++L+ + ++  R   FF + L    +I      
Sbjct: 178 FERINSQRLAEGKDPFANPRNAASGTLKQLDTSVVSERRLDAFFYYLLVNGLDI--DSHA 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L   +  G  V++   Q +T   I ++ +   + R +LP+  DG+V KVD  +LQ+ +
Sbjct: 236 ERLHLAKSWGIKVSDYSAQCSTLEDIYAFIDHWDTARRSLPFATDGIVLKVDSLALQQTI 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+ PRW I++K+  ++AST+L+D+  Q+GRTGI+TPVA L P+ I G ++  ATLHN
Sbjct: 296 GFTAKGPRWAIAYKYQPERASTQLIDVSYQVGRTGIITPVANLAPILISGTVVRRATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D+I  LD   K           D V V++ GE+IPK+  +  + R  DA P  FPS CP
Sbjct: 356 ADFILSLDLHQK-----------DYVYVEKGGEIIPKIAGVDKSLRQSDALPIVFPSTCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +++      G++   + C   L C  Q    ++H+  R A +I  +G + +D  +
Sbjct: 405 DCGTTLIK----AEGEV--GYFCPNKLGCPMQIKGSIEHYTQRKAADIT-IGPETIDALY 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                 F ++   D++ L      +   I ++ GF + +  NL  SI + ++      +F
Sbjct: 458 SR---GF-VKSICDLYRL------TADDILSLDGFKECATGNLLGSIEQSKSRPFPAILF 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR+VG  +A+ L + + S +   +               L  +  +G+ IA++IV F
Sbjct: 508 GLGIRYVGENVAKILTRTFNSIETLMEASQE----------ELQTIDGIGERIAESIVSF 557

Query: 616 YQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + + RN   + A LKE   ++         + +S  +E K +V +GT  +  R +  + +
Sbjct: 558 FADERNQKIIAA-LKEFGVTLSNPVEEGISEAISRPLEGKSIVISGTFSQHTRDEYTQII 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            QLG    + +S+KT  I+ G++ G SK EKA  LG+ +++E++FL L+   NT
Sbjct: 617 EQLGGKKVSSISQKTSFILAGEDMGPSKREKALSLGIPLLSEDEFLALVDLPNT 670


>gi|291288208|ref|YP_003505024.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809]
 gi|290885368|gb|ADD69068.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809]
          Length = 652

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 238/703 (33%), Positives = 381/703 (54%), Gaps = 65/703 (9%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  +++Y+   YY    P++ D+EYD L      I    P +   + P+    ++G +  
Sbjct: 6   LVDKLNYYSKKYYVEDDPVVADAEYDKLYNELLRIEAEDPSIISHDSPS---QRVGDKPV 62

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
             L  VTH I  LSL   ++ E+L KF+  I+  +   +       +EPKIDG  + + Y
Sbjct: 63  TGLENVTHEIKLLSLSNAYSREELEKFVENIWDEYPGAE-----IVVEPKIDGAAMVLTY 117

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E GK V  A RGDG +GEDV+  IR I ++P  L +     + +RGEV++    F  LN 
Sbjct: 118 EDGKLVRGATRGDGTTGEDVTHNIRTIRSLP--LEIEKSGRMIIRGEVFMPVASFERLNR 175

Query: 204 EMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL--GKTSEIFAKGQYEMLQK 260
                G K +ANPRNAA+G L+ L+  T   R L+ F++G+  G T         + ++ 
Sbjct: 176 LKGEKGEKLFANPRNAAAGTLKLLDSKTAYERGLDVFLYGMDMGGTEH-----HLKDMEL 230

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           M+ LGF +N   R+ N F  I ++   + S R++L YDIDG V KVD  + Q+ LG   +
Sbjct: 231 MKSLGFNINEMTRKFNNFEDIWAHVEYIGSRRNSLEYDIDGAVIKVDSKAYQRSLGSTIK 290

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           SP+W I++K+  ++A T L D+D Q+GRTG +TPVA+LEPV + G+ I+NATLHNED I 
Sbjct: 291 SPKWAIAYKYPAQEAVTILRDVDFQVGRTGSITPVAKLEPVFLAGSTISNATLHNEDEIA 350

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            L            I++GD+V +++ G++IPKVV  I++ER    +   F S CP+CQS+
Sbjct: 351 RL-----------GIKIGDKVTIRKGGDIIPKVVRPIIDERDGSERDIEFLSNCPVCQSK 399

Query: 441 VVR---DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           + +   D+N K         C   + C AQ+  +L HF SR A +I+G G+  ++     
Sbjct: 400 LQKEETDINRK---------CINPV-CPAQRKLKLLHFASRKAMDIQGFGEALVNKLVDD 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
            +    +   ADI+     ++    K E+  G+G+ SV  L+++I   +    ++ ++ L
Sbjct: 450 GE----LHDVADIY----EKRFDYLKEED--GYGEKSVQKLHEAIENSKKKPFDKVLYGL 499

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG   A+ LA+Y+        +I+ +++ + +   +L+ V  +G   A AIV  + 
Sbjct: 500 GIRHVGERTAQVLAEYF-------GDIDKLVSADEE---ALVNVRDIGSETAGAIVNSFA 549

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-KKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           N  ++  +   LK+        +K  +S++ N K  V TGTL  + R   ++ +   G  
Sbjct: 550 ND-DLSNIINRLKKSGLCFTAEKKEKASDVLNGKTFVVTGTLS-LPRDYFKKVIESNGGK 607

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V + +S K D ++VG+N GSKLEKAQ+LGV I++E     +L+
Sbjct: 608 VLSAVSGKLDYLLVGENAGSKLEKAQKLGVAIIDESGLTKMLK 650


>gi|291296053|ref|YP_003507451.1| DNA ligase NAD-dependent [Meiothermus ruber DSM 1279]
 gi|290471012|gb|ADD28431.1| DNA ligase, NAD-dependent [Meiothermus ruber DSM 1279]
          Length = 666

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 233/709 (32%), Positives = 372/709 (52%), Gaps = 52/709 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ +  L + I YH+  YY   KP I D+EYD L +   A+  A P+L     P+ 
Sbjct: 1   MQTPKQRIMELRELIRYHNYRYYVLDKPEISDAEYDRLLQELRALEEAHPELI---IPDS 57

Query: 74  PLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P   +G  +  + F  V H     SL   ++ +D+  F   I RF  +++     + LE 
Sbjct: 58  PTQTVGSAILETPFTPVPHPTRMYSLGNAFSQDDIADFEASINRFLGREESRE--YVLEY 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  + + YE+G F     RGDG +GEDV+  + AIP IPR   L  P  +EVRGE+Y
Sbjct: 116 KIDGLSVNLIYEEGVFRQGLTRGDGLTGEDVTPNLLAIPDIPR--QLPQPLDLEVRGEIY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           +    FL LN ++   G  P+ NPRNAA+G LR+ +P    +R L    +G+G+   +  
Sbjct: 174 LPIQTFLELNTQLEEAGEPPFKNPRNAAAGSLRQKDPRISASRGLRGLFYGVGRPESLGV 233

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E+L+K+  LGF V+   +      GI   Y  M + R +LP++ DG+  K++  SL
Sbjct: 234 GTQQELLEKLGQLGFSVDPHYQVVRGVEGIEQGYQAMLAARKSLPFEADGVTVKLNNLSL 293

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             +LG  A++PR+ I++KF  ++ +TR+L +  Q+GRTG +TPVA LEPV + G+ ++  
Sbjct: 294 WSELGYTAKTPRFAIAYKFPAEEKTTRVLRVIFQVGRTGRVTPVAELEPVFLDGSTVSRV 353

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNE Y++ L            +R+GD VLV ++G VIP+V+ ++       A P  +P
Sbjct: 354 TLHNESYVQEL-----------GLRIGDTVLVHKSGGVIPEVLRVVTEAPRGHA-PVEWP 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +       +GK+   H C   L C A+  E ++HF SR A +I+GLG++ +
Sbjct: 402 THCPECGTAL-----ELSGKI---HLCPNPL-CPAKAFEAIRHFASRRAMDIQGLGEKLI 452

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   ++      +R  AD++ L++    +  +        + S  NL + I   ++  LE
Sbjct: 453 EQLLET----GLVRDAADLYNLKKEDIAALERK------AEKSAQNLIEQIEASKSRGLE 502

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F+LGI  VG   AR+LAK +         +++I+    ++   L  VP + +  AQA
Sbjct: 503 RLLFALGIPQVGESTARALAKRF-------GHLDSILKATVEE---LDAVPDIAETTAQA 552

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           I +    P     +E  L+         EK  S  +E    V TG L + +   A++   
Sbjct: 553 IHQALARPEMQSFIER-LRAAGLVFEAREKQQSQALEGLTFVLTGELSRPREEVARQLEA 611

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             GA +S  +SRKT  +I G   GSKL KA++LG+ I++E     LL+Q
Sbjct: 612 H-GAKISGSVSRKTSYVIAGPGAGSKLSKAKELGIPILDEAGLRALLEQ 659


>gi|325297787|ref|YP_004257704.1| DNA ligase [Bacteroides salanitronis DSM 18170]
 gi|324317340|gb|ADY35231.1| DNA ligase [Bacteroides salanitronis DSM 18170]
          Length = 667

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 233/707 (32%), Positives = 369/707 (52%), Gaps = 54/707 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +E+  H+  YY  + P+I D E+D L R    +    P+     DPN P  ++G 
Sbjct: 7   IDQLREELHLHNYKYYVENAPVISDQEFDHLMRELQDLEARHPE---HYDPNSPSVRVGS 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++N +  +V H  P LSL   ++  ++ +F  RI     K  +       E K DGT I+
Sbjct: 64  DINKNFVQVEHRYPMLSLGNTYSQAEVTEFYERI----AKALNEDFEICCELKYDGTSIS 119

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFL 199
           + YE GK V A  RGDG  G+DV+  ++ I  IP VL  +  P   E+RGEV +    F 
Sbjct: 120 LTYENGKLVRAVTRGDGVRGDDVTDNVKTIRAIPLVLHGDGYPRQFEMRGEVLMPWKVFE 179

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN-FFVHGLGKTSEIFAKGQYEM 257
            LN E        +ANPRNAASG L+  N  ++  R L+ +  + LG+   +   G YE 
Sbjct: 180 ELNRERELREEPLFANPRNAASGTLKLQNSAEVAARKLDSYLYYMLGEN--LPHDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ+    GF V++  R+  T   I  + N     R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LQEAARWGFKVSHVTRKVKTLQEIFDFINYWDVERKNLPVATDGIVLKVNSLRQQRNLGY 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  ++A TRLL +  Q+GRTG +TPVA LEPV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAERALTRLLKVTYQVGRTGAVTPVANLEPVQLAGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I  L           D+ +GD V V++ GE+IPK+  + V  R   ++  +F + CP C
Sbjct: 358 IIASL-----------DLHIGDNVYVEKGGEIIPKITGVDVASRPEGSEKVTFITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +VR  +       AA+ CT   +C  Q   +++HF+SR A NIEGLG + +D F++ 
Sbjct: 407 GSPLVRYEDE------AAYYCTNESSCPPQIKGKIEHFISRRAMNIEGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   AD++TL+        ++      G+ S  N+   I + R +  ER +F+L
Sbjct: 461 ----GLIHDVADLYTLKAEDLVRLERM------GEKSAENIIQGIARSREVPYERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +A+ + S +  A           DD   LI V  +G+ IA +I+ ++ 
Sbjct: 511 GIRFVGETVAKKVARAFRSIEALA-------TATLDD---LIHVDEIGEKIAGSILRYFA 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           + +N   +E  L+     +   E++++    +++ K +V +G   +  R + +E + + G
Sbjct: 561 DEKNRNLIER-LRTAGLKLEADEEDLAGHTDKLQGKSIVISGVFARHSRDEYKEMIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
                 +S+KT  I+ G+N G SKLEKA+ L + +M E++FL ++ +
Sbjct: 620 GKNVGSISKKTSFILAGENMGPSKLEKARALNIPVMGEDEFLAMVGE 666


>gi|291569184|dbj|BAI91456.1| DNA ligase [Arthrospira platensis NIES-39]
          Length = 683

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 226/716 (31%), Positives = 366/716 (51%), Gaps = 52/716 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I Q   +L    Q  SY    YY    PI+ D  YD L R    + + +P+L     P+ 
Sbjct: 12  ISQKLAQLRLTVQRASY---AYYVLDDPIMEDGVYDRLYRELQELENQYPELI---SPDS 65

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +       VTH+IP  SLE  +N+ +L+ +  +  RF          +  E K
Sbjct: 66  PTQRVGEKPAAQFQSVTHNIPLYSLENAFNMAELQAWDEKWRRFLGDSLPQDPKYICELK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           IDG+ I + Y  G  V    RGDG +GED++  ++ I +IP  L L N P ++EVRGE +
Sbjct: 126 IDGSAIALTYHNGILVRGVTRGDGVTGEDITQNVKTIRSIPLKLHLDNPPPVVEVRGEAF 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +S + F+ +N E    G   +ANPRNAA+G LR+L+P  +  R L+FF + L   S    
Sbjct: 186 LSNHIFVQINQERQQTGEPLFANPRNAAAGTLRQLDPRIVADRRLDFFAYTLHLDSPNL- 244

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++ L+ ++ +GF VN   +   +   +  Y++   + R  LPY  DG+V K++  SL
Sbjct: 245 HDHWDCLELLQKMGFKVNPNRQLCQSLLEVQQYFDAWDTQRRELPYMTDGVVVKLNSLSL 304

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QKQLGE  + PRW I+ K+  ++  T+++ +  Q+GRTG LTPVA LEP+ + G  +  A
Sbjct: 305 QKQLGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTVKRA 364

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D +  L           D+ +GD V+V++AGE+IP+VV ++ + R   A+  + P
Sbjct: 365 TLHNQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMP 413

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C   V++   P      A  RC    +C A     + H+  R A +I G+G++ +
Sbjct: 414 THCPECGETVIK--TPAE----AVTRCINS-SCPAIVRGSIIHWCQRPALDINGIGEKLV 466

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                ++     +R  AD++ L   Q     ++      G+ S   +  +I   +     
Sbjct: 467 QQLVDAQ----LVRSVADLYDLNMDQLLELDRM------GEKSAQKILAAIATSKQQPWH 516

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRHVG   A+ LA+ + S Q+ A   +  I            V  +G  IA +
Sbjct: 517 RVLYGLGIRHVGKANAQLLAQNFPSCQSLAAASSAQIEG----------VYGIGAEIATS 566

Query: 612 IVEFYQNPRNICAVEAL----LKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           + +++QNP NI   + L    L+  S PS      + +     K  V TGTL  + R +A
Sbjct: 567 VYQWFQNPANISLCDRLQQAGLQLTSVPSTAPKSTHQAQPFAGKTFVLTGTLPTLSRDQA 626

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  +   G  V+  +++K D +++G+ PGSKL+KAQ L +  ++E  FL +++  N
Sbjct: 627 KSMIENAGGKVTNSVTKKVDYLLLGEKPGSKLKKAQDLAIANLSESDFLAMIKSAN 682


>gi|184201319|ref|YP_001855526.1| NAD-dependent DNA ligase [Kocuria rhizophila DC2201]
 gi|254781351|sp|B2GL64|DNLJ_KOCRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183581549|dbj|BAG30020.1| NAD(+)-dependent DNA ligase [Kocuria rhizophila DC2201]
          Length = 766

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 236/758 (31%), Positives = 372/758 (49%), Gaps = 80/758 (10%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P EAL     R+E + L   +      YY + +P+I D+EYD L R  +      P+L  
Sbjct: 25  PSEAL-----REEYAQLSDRVREARAAYYVHDQPVISDAEYDQLYRSLEEFEALHPELKA 79

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSI 126
           ++ P     ++GGE+  +   V H     SLE +++ ++L  ++ R  +   +      +
Sbjct: 80  NDSPT---QEVGGEVGAAFSPVKHLEKMYSLEDVFSTDELVAWLERAQKQVAELPGAPEV 136

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEII 185
            +  E KIDG  + + Y  G  V AA RGDG +GED++  +  I TIP+ LS  N+PE +
Sbjct: 137 AWLSEVKIDGLAVNLLYRDGVLVRAATRGDGTTGEDITHNVATIKTIPQRLSGENLPEEV 196

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EVRGEV+IS  DF  LN+ M+  GR P+ANPRNAA+G LR+ +P     R L+ FVHG+G
Sbjct: 197 EVRGEVFISSKDFRTLNEAMVEEGRAPFANPRNAAAGSLRQKDPQVTARRPLSMFVHGIG 256

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
               +  + Q E  + +R  G PV+   R  +T   ++ +  E    R  L ++IDG+V 
Sbjct: 257 YVRGVDLETQSEAYEILRGWGLPVSPYSRVLSTVAEVLEFIAEFGDKRHALLHEIDGIVV 316

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+   Q +LG  +R PRW +++K+  ++ +T L+DI + +GRTG +TP   ++PV + 
Sbjct: 317 KVDDRRTQFRLGYTSRVPRWAVAYKYPPEEVNTTLVDILVNVGRTGRVTPFGLMDPVRVA 376

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ +  ATLHN+D ++            + + +GD V++++AG+VIP++V  +V  R   
Sbjct: 377 GSTVEMATLHNQDMVR-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVALRDGS 425

Query: 425 AQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            + F  P+ CP C +     L P K G +    RC     C +Q  ER+ H   R AF+I
Sbjct: 426 EREFVMPAECPSCGT----PLRPAKEGDVDI--RCPNAETCPSQLKERVNHAAGRGAFDI 479

Query: 484 EGLGKQQ---------LDFFFKSEDPAFSIRIPADIFTLQ-------------RRQQTST 521
           E LG++          LD    +E     +R  A +F L              RR  T  
Sbjct: 480 EALGEEAARALTQPVPLDAPDGTELSVPPLRNEAGLFDLTPEDLRDVMVWRDARRTVTDE 539

Query: 522 TKIENIL-------------------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
              E +                         +   ++  + + ++  L R + +L IRHV
Sbjct: 540 ETGEKVQRVTPELVPYFWTKPTKARPSVPSKTTEQMFAQLEQAKDTELWRVLVALSIRHV 599

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   ARSLA    S     Q     +A  +           VG +IAQA+ EF+  P   
Sbjct: 600 GPTAARSLATSLRSMDAIRQADPETLAGTDG----------VGPVIAQAVQEFFAEPWRR 649

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             VE             +++    +E   +V TG+L+   R  A+E + + G   S  +S
Sbjct: 650 RVVEQWAAAGVRMEEEVDESTPRTLEGVTVVVTGSLEGYSRDSAKEAILKRGGKASGSVS 709

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +KT  ++ GDN G+KL+KA+ LGV +++E  F  LL Q
Sbjct: 710 KKTHFLVAGDNAGTKLDKAESLGVPVLDEAGFEQLLAQ 747


>gi|309812136|ref|ZP_07705894.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185]
 gi|308433823|gb|EFP57697.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185]
          Length = 770

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 231/724 (31%), Positives = 370/724 (51%), Gaps = 67/724 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L ++I  H   YY    P I D EYD L R    +  ++P+L RS  P  P  +
Sbjct: 26  RHRAAELTEQIDGHQFAYYVKDAPTISDGEYDELLRELQGVEESYPEL-RS--PESPTQR 82

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG  +     V H    LSL+  ++ E+L ++  R+ R    + + S  +  E KIDG 
Sbjct: 83  VGGTYSTEFTAVDHVERMLSLDNAFSPEELAEWGDRVVR----EANTSFHYLCELKIDGL 138

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I + YE GK V    RGDG +GEDV+  +R I  IP  L   ++P+++E+RGEV+    
Sbjct: 139 AINLLYENGKLVRGVTRGDGRTGEDVTLNVRTIQGIPLELHGDDLPQLVEIRGEVFFPVK 198

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +F ALN  ++  G+ P+ANPRNAA+G LR+ +P     R L   VHG+G  +      Q 
Sbjct: 199 EFEALNASLVEEGKSPFANPRNAAAGSLRQKDPAKTAKRPLRMLVHGIGARTGFDITRQS 258

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E  + +   G P +      +T   +  +       R ++ ++IDG+V KVDE ++Q+ L
Sbjct: 259 EAYELLADWGLPTSPYAEVLDTMDEVQKFVAHYGEHRHSVTHEIDGVVVKVDEIAVQRAL 318

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I++K+  ++ +T+LLDI++ +GRTG +TP   ++PV + G+ ++ ATLHN
Sbjct: 319 GATSRAPRWAIAYKYPPEEVNTKLLDIEVNVGRTGRVTPFGMMQPVKVAGSTVSMATLHN 378

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
                    + +V R G  + +GD V++++AG+VIP++V  +V  R  D + F  P+ CP
Sbjct: 379 ---------AFEVKRKG--VLIGDTVVLRKAGDVIPEIVGPVVEARTGDEREFVMPTHCP 427

Query: 436 ICQSRVV--RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
            C + +   R+ N          RC  G  C +Q  ERL    SR AF+IE LG +    
Sbjct: 428 ACGTELAYEREGNKDI-------RCPNGRTCPSQLRERLFSLASRGAFDIEALGWEGAIS 480

Query: 494 FFKS-----EDPAFSI------RIPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLY 539
             +S     E   F +      R+P  ++T   ++     K+ +   +   G+  + NL 
Sbjct: 481 LLESGVLTDESTLFDLTYDDLARVP--LYTRVAKKSDPEAKVRDGRIVSATGEKLLANL- 537

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
                 +   L R I +L IRHVG   AR+LA  +           +I A  + D  +L 
Sbjct: 538 ---EVAKTQPLWRVIVALSIRHVGPTAARALATQF----------GSIDAIRDADEATLA 584

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK----KLVFT 655
               VG +IA +I E++     +   E ++   + S  R E      IE       +V T
Sbjct: 585 ATDGVGAVIAHSIKEWFA----VDWHENIVAGWAASGVRMEDERDESIEQTLAGLTIVAT 640

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G+L+   R   +E +   G   S  +S+KTD +++G+N GSK  KA++LG++I++E QF 
Sbjct: 641 GSLENFTRDGVKEAIIARGGKASGSVSKKTDYVVLGENAGSKATKAEELGLRILDEAQFT 700

Query: 716 FLLQ 719
            LL+
Sbjct: 701 RLLE 704


>gi|269127766|ref|YP_003301136.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183]
 gi|268312724|gb|ACY99098.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183]
          Length = 722

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 239/741 (32%), Positives = 368/741 (49%), Gaps = 67/741 (9%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E    E AR+  + L +EI   +  YY   +P + D+EYD L R    +    P+L    
Sbjct: 5   EGTPTEAARRH-AELSREIDEANYRYYVLDRPTLSDAEYDRLMRELRELEERHPELV--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++G  +      V H    LSL+     E+L  +  R+     K+      + 
Sbjct: 61  TPDSPTQRVGAPIVTDFATVQHLERMLSLDNAMTGEELAAWGERVL----KEVGEQASYL 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188
            E KIDG  + + Y  G+ V  A RGDG +GEDV+  IR I  +P R+     P ++EVR
Sbjct: 117 CELKIDGLAVALVYRDGRLVRGATRGDGRTGEDVTNNIRTIDVVPDRLSGEGWPSLLEVR 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-T 246
           GEV+++   F  +N  M+  GR+P+ANPRNAA+G LR+ +P     R L+  VHG G   
Sbjct: 177 GEVFLTVASFEQINAAMVDAGREPFANPRNAAAGSLRQKDPRITARRPLSMLVHGFGAWE 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                + Q E  + MR  G PV++  +      G+  Y       R   PY+IDG+V KV
Sbjct: 237 GRELPRSQSEAYELMRSWGLPVSDLYKVVPDLEGVREYVAHYGEHRHDPPYEIDGVVVKV 296

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ+++G  +R+PRW I+ K+  ++ +T+LLDI + +GRTG +TP   +EPV + G+
Sbjct: 297 DQLALQRRMGSTSRAPRWAIAFKYPPEEVNTKLLDIKVGVGRTGRITPYGVMEPVKVAGS 356

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN         +G+V R G  + +GD V++++AG+VIP++V  +   R    +
Sbjct: 357 TVAYATLHN---------AGEVARKG--VLIGDTVVLRKAGDVIPEIVKPVTELRDGSER 405

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF  P  CP C +R+  +   K G   A  RC     C  Q  ERL    SR+A +IE L
Sbjct: 406 PFHMPETCPECGTRLAYE---KEGD--ADIRCPNARYCPGQLRERLFFAASRNALDIEAL 460

Query: 487 G---KQQLDFFFKSEDPAFSIRIPADIFTLQ-----------RRQQTSTTKIENILGFGD 532
           G      L    +  DP   +R   D+F L+           R  +T   KI+   G   
Sbjct: 461 GYVAATALTQPLEPSDP--PVRNEGDLFHLKVEQLLPIRTVVRDPRTGLPKIDPKTGEQK 518

Query: 533 V-------------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
           V             +V  L+  + K +   L R + +L IRHVG   AR+LA+ + S   
Sbjct: 519 VVSFFATKDGRPKKTVEVLFAELEKAKTRPLWRVLVALSIRHVGPTAARALAREFGS--- 575

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
               I+ I+  + ++   L  V  VG  IA +I  ++    +   +E   +     +   
Sbjct: 576 ----IDAIMKASEEE---LAAVDGVGPAIAASIKRWFAEDWHREIIEK-WRAAGVRMADE 627

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
             +    +    +V TGTL+   R  A E V   G  V+  +S+KT+ ++VGDNPGSK +
Sbjct: 628 GADGPRPLSGVAVVITGTLEHYSRDSATEAVLSRGGRVTGSVSKKTNFVVVGDNPGSKYD 687

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           KA +LGV +++E+ F  LL+Q
Sbjct: 688 KAVKLGVPVLDEDGFRVLLEQ 708


>gi|225155696|ref|ZP_03724184.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2]
 gi|224803490|gb|EEG21725.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2]
          Length = 761

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 240/786 (30%), Positives = 376/786 (47%), Gaps = 118/786 (15%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           + P E   +++    +++L  E++ HD+ YY+ ++P I D +YD LKR    +    P L
Sbjct: 1   MTPAEPTPVQR----IANLRAELARHDELYYRAARPEISDYDYDRLKRELANLESQHPQL 56

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--- 122
              + P     +IG +      +V H    L+L+  ++  +LR+F  R+ +   K++   
Sbjct: 57  DLGDSPT---LRIGDDRVEGFTRVRHRQAMLTLDNTYDEGELREFHVRVVKALSKENPPP 113

Query: 123 --------------------------------------DNSIFFTLEPKIDGTMITIRYE 144
                                                 D +I + +EPKIDG  I++ YE
Sbjct: 114 PPPPPPSPTTTATKPTEQLDLFAPVPSPPPPPLPPATFDANIAYIVEPKIDGVSISLTYE 173

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------SLNIPEIIEVRGEVYISKNDF 198
            GK   A  RGDG  G+DV+A ++ I  +P  L      +  +P +IE+RGE+++ + +F
Sbjct: 174 HGKLTQAITRGDGTEGDDVTANVKTIHGLPHTLCHAPGTTTPLPALIEIRGEIFLREEEF 233

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK------------ 245
             +N +    G  PYANPRN A+G L++L+PT + +R L   ++GLG             
Sbjct: 234 RRINQQQEEAGDAPYANPRNLAAGTLKQLDPTLVASRRLEIVLYGLGACEPAVPPPPPSA 293

Query: 246 -TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            T  +    Q    +++   G P    +        + +   E+  +R T  Y  DG V 
Sbjct: 294 PTDALGFDSQTTYQRQLIAWGLPTVEKIWSVRGIDAVWTAIQELDRLRRTFAYATDGAVV 353

Query: 305 KVDEFSLQKQLGERAR------------SPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
           K+D F+ QK LG R              SPRW  + KF   +A TRL  I IQ+GRTG+L
Sbjct: 354 KLDLFAQQKILGYRGADATGRAQEARKLSPRWACAFKFPPDRAKTRLRAITIQVGRTGVL 413

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPVA L+PV + G+ +  ATLHN D I             +D+R+ D VL+++AGE+IP 
Sbjct: 414 TPVAELDPVLLAGSTVRRATLHNADEI-----------ARKDVRINDTVLIEKAGEIIPA 462

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
           V+++IV +R PD+ P++FP  CP C +  VR       + +  H       C  +   R+
Sbjct: 463 VINVIVEKRPPDSIPYAFPQNCPACNTPAVRIEGEVAWRCLNPH-------CPGKMRRRI 515

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532
            HFVS+   +IEGLG++ ++           I+   D+F L R Q     K       G+
Sbjct: 516 AHFVSKACLDIEGLGREIVELLLDHN----LIKTIPDLFRLTREQLLPLKK------SGE 565

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
               NL ++I  RR   L R I  LGI  VGA  A++LA+ + S       ++ + A   
Sbjct: 566 TWSGNLINAIAARRTADLWRVIHGLGIPQVGAAAAKNLARAFRS-------LDALAAATL 618

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
            D   L R+P  G   AQA+ +++ +P N   +  L +             +  +  K +
Sbjct: 619 PD---LERLPDFGATTAQAVRDWFADPHNQELIADLQRAGLAPTPPAAAATNHPLAGKTI 675

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R +A E +   G  +S  +S+KT  ++ G   GSKLEKAQ+LGV I++E 
Sbjct: 676 VLTGTLPTLTREQATEKIEAAGGKISTSVSKKTHYVLAGAEAGSKLEKAQKLGVPILDEA 735

Query: 713 QFLFLL 718
            FL LL
Sbjct: 736 AFLQLL 741


>gi|330830678|ref|YP_004393630.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565]
 gi|328805814|gb|AEB51013.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565]
          Length = 787

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 210/567 (37%), Positives = 324/567 (57%), Gaps = 35/567 (6%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R   A+    P+L   + P  P  ++GG+   +  +V H IP
Sbjct: 22  YYVLDNPTVPDAEYDRLMRELIALEADHPEL---KTPASPSVRVGGQPLTAFSQVRHEIP 78

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ +++ E+L+ F  R+    + K D    F  EPK+DG  +++ Y  G+ V AA R
Sbjct: 79  MLSLDNVFSSEELQAFEQRMSD--RLKRDVRFTFCCEPKLDGLAVSLLYVNGQLVQAATR 136

Query: 155 GDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GE+++  +R I  IP  L     P+ +EVRGEV++ K  F A+N + +A G K +
Sbjct: 137 GDGATGEEITENVRTIKAIPLALRGSGWPDRLEVRGEVFMPKAGFEAMNAKALAAGEKVF 196

Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
            NPRNAA+G LR+L+     +R L+F+ +G+G   E+     +  L +++  G P++  V
Sbjct: 197 VNPRNAAAGSLRQLDSRITASRPLSFYAYGVGVGGELLGDSHFGRLNQLKAWGLPLSPEV 256

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           +      G  ++++++ + R  LPY+IDG+VYKVD   LQ++LG  AR+PRW  +HKF  
Sbjct: 257 KLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELGFVARAPRWATAHKFPA 316

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           ++  T L +++ Q+GRTG +TPVA+L+PV +GG  ++NATLHN D I+ L          
Sbjct: 317 QEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNADEIERL---------- 366

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD---LNPKT 449
             + VGD V+V+RAG+VIP++V ++  +R  DA+   FP+ CP+C S +V++   +  KT
Sbjct: 367 -GVMVGDTVIVRRAGDVIPQIVAVVEAQRPSDARAILFPTECPVCGSDIVQEKKIVQQKT 425

Query: 450 G---KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
               K++A  +CTGGL C AQ  E LKHFVSR+A +IEG+G + ++      D    ++ 
Sbjct: 426 KTLEKILATRKCTGGLNCLAQVKESLKHFVSRNAVDIEGVGDKVIEQLV---DGGL-VKH 481

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR-RNISLERFIFSLGIRHVGAE 565
           PAD+F L      S      + GF +VS  N +D+I  +    S   F+F LGI  VG  
Sbjct: 482 PADLFRL------SVDDFLKLDGFAEVSAKNAFDAIQAKIGTTSSIDFLFGLGIPSVGQV 535

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNN 592
           +A  L        N       II+  N
Sbjct: 536 VAERLIVELGCLDNIISAPRGIISQIN 562



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           S I  K  V TG+   + R K    + +LG      +S+ TD++I+GD  GSKL+KA +L
Sbjct: 708 SFIAGKSFVITGSFTFMSRDKLNSKLKELGGESKTSVSKNTDMLIMGDKAGSKLKKATEL 767

Query: 705 GVKIMNEEQFLFLLQQYN 722
           G+KI+NE++   LL+  N
Sbjct: 768 GIKIINEDELRSLLESEN 785


>gi|224418026|ref|ZP_03656032.1| NAD-dependent DNA ligase LigA [Helicobacter canadensis MIT 98-5491]
 gi|253827358|ref|ZP_04870243.1| DNA ligase, NAD-dependent [Helicobacter canadensis MIT 98-5491]
 gi|313141565|ref|ZP_07803758.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter
           canadensis MIT 98-5491]
 gi|253510764|gb|EES89423.1| DNA ligase, NAD-dependent [Helicobacter canadensis MIT 98-5491]
 gi|313130596|gb|EFR48213.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter
           canadensis MIT 98-5491]
          Length = 650

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 238/695 (34%), Positives = 372/695 (53%), Gaps = 76/695 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    PI  D EYDAL  +        P     + P     ++G  +  S  K  H   
Sbjct: 20  YYILDDPIASDEEYDALYHQIKEFEANNPTQISKDSPT---QRVGDRILESFNKSEHIER 76

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+ I+N ++L+ +I R+ +      D ++ FT++PK DG  + + YE G    A  R
Sbjct: 77  MWSLDDIFNTQELQDWINRVSK------DENLNFTIDPKFDGASLNLLYENGILQKATTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+V+   + IP+IP  LS+   + IE+RGE  I+K+DF A+N E +  G   +A
Sbjct: 131 GDGFIGEEVTQNAKTIPSIP--LSIPYTDKIEIRGECVIAKDDFEAINQERLENGEALFA 188

Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           NPRNAA+G LR+L+ + IT  R L F   G+G   +I  +  + +++K+R  GF  +   
Sbjct: 189 NPRNAAAGSLRQLD-SKITSKRKLQFIPWGVG-FCQINEESFFALMEKIRSFGFIASPFS 246

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           +  +    I   Y  + S R + P  +DG+V +VD   LQK LG   ++PR+  ++KF  
Sbjct: 247 KLCSNLQAIEDSYQNLISKRDSYPITLDGMVIRVDNIPLQKSLGFTIKAPRFACAYKFPA 306

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            +   ++LDI +Q+GRTG++TPVA LEPV I GA ++ ATLHN D IK            
Sbjct: 307 IEKKAKILDIVLQVGRTGVITPVAILEPVMIEGAKVSRATLHNFDEIK-----------K 355

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           +DI + D V++ R+G+VIPK++  +   R    +    P+ CPIC S ++ +      KL
Sbjct: 356 KDILINDSVILIRSGDVIPKIIKSLPTLRDGTQKQCKMPTHCPICNSELLIE-----EKL 410

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           +   +C   L C A+    L HF+S+ A NI+GLGK+ +D  F+       I    DIF+
Sbjct: 411 I---KCQ-NLNCKARVKNSLIHFISKKALNIDGLGKRIIDLLFE----LGKITKIEDIFS 462

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           LQ         +E + GF D  + NL ++I + + I L RFI +LGI H+G   ++ LA 
Sbjct: 463 LQYED------LEGLEGFKDKKIHNLLNAIKQAKGIDLWRFINALGIEHIGEGASKKLAN 516

Query: 573 ------YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF-YQNPRNICAV 625
                 Y+ S+++F                  + +   G+ +A ++VEF + N   I  +
Sbjct: 517 TFGNDFYHKSFEDF------------------VVLDGFGEEMANSLVEFCHVNQERINHL 558

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
            A+L+   P   +   N +  + N+  V TGTL + +R   QE +  LGA VS+ +S+KT
Sbjct: 559 LAILQ---PKCNQSTTNAN--LSNQTFVITGTLSQ-KREVYQEILESLGAKVSSSVSKKT 612

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + ++ G+  GSKL KAQ+LGVK+++EE F  L+Q+
Sbjct: 613 NFLLCGEEAGSKLTKAQELGVKVISEEDFWNLIQE 647


>gi|327474802|gb|EGF20207.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK408]
          Length = 652

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 229/698 (32%), Positives = 369/698 (52%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEKKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  R+     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRV-----RKEFPQVSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++     +++ +  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            +L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++L
Sbjct: 229 AVLNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +P   PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LG
Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 610 ANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647


>gi|322389291|ref|ZP_08062851.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           903]
 gi|321144035|gb|EFX39453.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           903]
          Length = 652

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 230/700 (32%), Positives = 367/700 (52%), Gaps = 66/700 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL  L    +Y    YY    P + DSEYD L R    +  A PD      P  P +++
Sbjct: 6   KELVELLNRYAYE---YYTKDAPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+     +K+  SI +  E KIDG  
Sbjct: 60  GGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRV-----RKEFPSISYVCELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G  V  A RGDG  GED++  ++ +  IP VL    P  I VRGE Y+ +  F
Sbjct: 115 ISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPE--PVNITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+ T +  R L  F++   + S      Q  +
Sbjct: 173 DRVNQIRQENGEPEFANPRNAAAGTLRQLDTTIVAKRNLATFLYQ--EVSPTDQSSQEGV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K+ CLGF VN     A     I  +  ++  +R  LPYDIDG+V KV++ ++Q++LG 
Sbjct: 231 LEKLACLGFVVNQERVLAEDMEQIWDFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   ++L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DI   D V+V +AG++IP V+ ++ ++R  D Q  + P+ CP C
Sbjct: 351 YI-----------AEKDIHQDDTVIVYKAGDIIPAVLRVVKDKRVSD-QALAIPTQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS ++   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F +
Sbjct: 399 QSELLHFEDE------VALRCINPL-CPAQIKEGLNHFASRDAMNITGLGPAVVEKLFAA 451

Query: 498 ---EDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              ED A   R+   D+ TL+              GF + S   LY++I   +  S E+ 
Sbjct: 452 QLVEDVAGIYRLTVEDLLTLE--------------GFKEKSAEKLYEAIQASKENSAEKL 497

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIRHVG++++          Q   QE +++      D   +  +  +G ++A+++ 
Sbjct: 498 LFGLGIRHVGSKVS----------QILLQEFHDLDQLATADPERIASIDSLGMVVAESLK 547

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVT 671
            ++    +   ++  LKE   ++    + V+++  +    +V TG L+++ R +A+  + 
Sbjct: 548 RYFAQEGSKRLLQE-LKEAGVNMAYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLE 606

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            LGA V+  +S+KTD+++ G + GSKL KAQ+LG+++ +E
Sbjct: 607 SLGAKVTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDE 646


>gi|325687188|gb|EGD29210.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK72]
          Length = 652

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 231/698 (33%), Positives = 368/698 (52%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  R+     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRV-----RKEFPQVSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQADSQE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++L
Sbjct: 229 EVLNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EALEVPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNIAGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LG
Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 610 ANVSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDED 647


>gi|269103205|ref|ZP_06155902.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163103|gb|EEZ41599.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 495

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 201/533 (37%), Positives = 315/533 (59%), Gaps = 43/533 (8%)

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           + K  F  LN   +  G K +ANPRNAA+G LR+L+     TR L+F+ + +G       
Sbjct: 1   MPKKGFEQLNQRALKKGEKTFANPRNAAAGSLRQLDSKVTATRPLSFYAYAVGIVEGREL 60

Query: 252 KG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           +G QY+ L +++  GFP++  +R+ ++   ++ Y+  +   R +L YDIDG+V KVD+  
Sbjct: 61  EGSQYDRLCQLKSWGFPMSPEIRRVDSIEEVIRYHQMIGEKRESLEYDIDGVVIKVDKVD 120

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q QLG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 121 TQLQLGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSN 180

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            + VGD V+++RAG+VIP++V ++ + R  DA P  F
Sbjct: 181 ATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVSVVESRRPADASPVIF 229

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS+V R      G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G G++ 
Sbjct: 230 PTECPVCQSKVER----IEGEAVA--RCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKV 283

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L     T+  ++      G  S   L D++   +  +L
Sbjct: 284 IEQLVDRE----MVTTPADLFRLSAGVVTALDRM------GPKSAQKLVDALGNAKETTL 333

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI+SLGIR VG   A +LA Y+       + +  ++  + D    LI VP VG+I+A 
Sbjct: 334 SRFIYSLGIREVGEATAANLAHYF-------ETLEALMTASKD---QLIEVPDVGEIVAA 383

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            I  F++   N+  V   L++V    P I +   +V    E K +V TG+L ++ R +A+
Sbjct: 384 HIFNFFREEHNLAVVND-LRDVGIHWPDIEKVADDVELPFEGKTVVLTGSLSQLSRTEAK 442

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           E + +LGA V+  +S+KTD+++ G+  GSKL KAQ+LG+++ +E+Q +  +Q+
Sbjct: 443 EALQKLGAKVTGSVSKKTDLVVAGEAAGSKLTKAQELGIEVWDEQQLIDFMQR 495


>gi|296270799|ref|YP_003653431.1| NAD-dependent DNA ligase [Thermobispora bispora DSM 43833]
 gi|296093586|gb|ADG89538.1| DNA ligase, NAD-dependent [Thermobispora bispora DSM 43833]
          Length = 732

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 242/741 (32%), Positives = 379/741 (51%), Gaps = 85/741 (11%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL+ L +E ++    YY    P + D+EYDA  R    +   +PDL     P+ P  K+G
Sbjct: 23  ELAELIEEANWR---YYVLDSPTVSDAEYDAWMREIRELEERYPDL---RTPDSPTQKVG 76

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G ++     VTH     SL+  ++ EDL  +  RI R +     +   F  E KIDG  +
Sbjct: 77  GAISTEFTPVTHLRRLESLDNAFSDEDLAAWHARIQRLYGA---DVGPFLCELKIDGLAV 133

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
            + YE G+ V AA RGDG +GED++  IR I  +P R+    +P ++EVRGEV++    F
Sbjct: 134 ALVYENGRLVRAATRGDGRTGEDITPNIRTIRNVPHRLTGDGVPSLLEVRGEVFLPVEGF 193

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG---- 253
             LN++++  G++P+ANPRNAA+G +R+ +P     R L   VHG+G    ++  G    
Sbjct: 194 RRLNEQLLDAGKQPFANPRNAAAGSVRQKDPRVTAQRPLKMIVHGVG----VWEGGDPPE 249

Query: 254 -QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q  + +++R LG PV+   R      GI  Y    +  R    Y+IDG+V KVD  ++Q
Sbjct: 250 SQSAVYERLRELGLPVSERYRVVEDLGGIREYIAYYREHRHDPEYEIDGVVAKVDRIAVQ 309

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  +R+PRW I+ K+  ++ +T+LLDI + +GRTG +TP A ++PV + G+ +  AT
Sbjct: 310 RALGSTSRAPRWAIAFKYPPEEVTTKLLDIQVGVGRTGRVTPYAVMKPVVVSGSTVERAT 369

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN         + +V R G  + +GD V++++AG+VIP++V  +V+ R    + F  P+
Sbjct: 370 LHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEIVGPVVDLRDGSEREFVMPT 418

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG---KQ 489
            CP C +R+  +   + G   A  RC    +C AQ  ER+     RDA +IEGLG     
Sbjct: 419 HCPECGTRLAYE---REGD--ADLRCPNTKSCPAQLRERIFFAAGRDALDIEGLGYVAAS 473

Query: 490 QLDFFFKSEDPAFSIRIPADIF-----------TLQRRQQTSTTKIENILG-------FG 531
            L      ++P   IR  AD+F           T+ R   T   K++   G       F 
Sbjct: 474 ALTQPLPPQEP--PIRTDADLFDLTMDRLLPIKTVVRDPDTGLPKLDPQTGEPKVVSFFA 531

Query: 532 DVS------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
            VS         L + + + +   L R + +L IRHVG   AR+LA+++ S    A    
Sbjct: 532 TVSGAPSKNAEKLLEQLEQAKQRPLWRILVALSIRHVGPPTARALAEHFRSIDAIAAASE 591

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP--RNIC----AVEALLKEVSPSIGRH 639
             +A              +G +IA AI E++     R I     A    + +  P++   
Sbjct: 592 EELAAVEG----------IGPVIAAAIKEWFSVDWHREIIERWRAAGVRMADEEPAVPEG 641

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
            +     +E    V TGTL    R +A E +T  G  V++ +S+KTD ++VG+NPGSK  
Sbjct: 642 PRP----LEGLTFVITGTLSGYTRDEAGEAITSRGGRVASSVSKKTDFVVVGENPGSKYA 697

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           KA +LG+  ++E+ F  LL++
Sbjct: 698 KAVKLGIPRLDEQGFQVLLEK 718


>gi|85713360|ref|ZP_01044373.1| NAD-dependent DNA ligase [Idiomarina baltica OS145]
 gi|85692818|gb|EAQ30803.1| NAD-dependent DNA ligase [Idiomarina baltica OS145]
          Length = 449

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 197/472 (41%), Positives = 286/472 (60%), Gaps = 36/472 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++EQ  +EL   EQ+++ ++  YY+  +P I DSEYD L R    +    P+L   +  +
Sbjct: 6   TVEQRMREL---EQQLTRYNKEYYELDEPTIPDSEYDKLFRELQTLEANNPEL---KSQH 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF--FTL 130
            P  K+G +   +   VTH +P LSL+  ++ E+   F  RI    Q++ D+S+   F  
Sbjct: 60  SPTEKVGSKPLDAFTSVTHELPMLSLDNAFSSEEFSAFAERI----QQRVDSSVAWAFCC 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPK+DG  ++I YE G+ V AA RGDG+SGED++A ++ I  +P  LS + PE +EVRGE
Sbjct: 116 EPKLDGLAVSILYENGQLVRAATRGDGYSGEDITANVKTIKNVPLQLSDDAPERLEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++  + F   ND       K +ANPRNAA+G LR+L+ + IT  R L+F+ + LG  SE
Sbjct: 176 VFMMTDAFERFNDNARKRDEKVFANPRNAAAGSLRQLD-SRITAKRPLHFYAYSLGVVSE 234

Query: 249 I----FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 A   YE LQ++   G P+N+ V++  +     +YY  M   R  L Y+IDG+VY
Sbjct: 235 QDQEQLADSHYERLQQLSAWGLPINDEVKRVESVEACETYYQAMLEKRDRLRYEIDGIVY 294

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   +Q +LG  AR+PRW I+ KF  ++  TR+  +D Q+GRTG +TPVARLEPV++G
Sbjct: 295 KVDSIRMQNELGFVARAPRWAIARKFPAQEQLTRITGVDFQVGRTGAITPVARLEPVSVG 354

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D         +V R G  + +GD V ++RAG+VIP+VV ++ +ER  D
Sbjct: 355 GVTVSNATLHNAD---------EVARLG--VMIGDTVSIRRAGDVIPQVVSVLESERPED 403

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           AQ   FPS CP+C S V R      G+ VA  RC+GGL C+AQ+ E +KHF 
Sbjct: 404 AQAIEFPSHCPVCDSEVER----IEGEAVA--RCSGGLICAAQRKEAIKHFA 449


>gi|295394422|ref|ZP_06804646.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972774|gb|EFG48625.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 740

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 240/748 (32%), Positives = 374/748 (50%), Gaps = 83/748 (11%)

Query: 18  RKELSS-LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           R++L++ L  +I  H + YY +  P I D E+D L    + +  A+P+LAR + P     
Sbjct: 22  RQKLAAELAAQIEEHREAYYVHDAPKISDKEFDELVHALEDLESAYPELARDDSPT---Q 78

Query: 77  KIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           K+GG  +   F  V H     SLE ++++E+L ++  R+     K       F  E KID
Sbjct: 79  KVGGYADTEAFAPVQHVARMYSLEDVFSVEELDQWFERV----AKSVPAGTPFLSEVKID 134

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G    + YE G+ V AA RGDG++GED++A +R I  IP  L + N P  +E+RGEV+  
Sbjct: 135 GLACNLLYENGQLVRAATRGDGYTGEDITANVRTIDDIPTTLNATNPPARVEIRGEVFFP 194

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
            + F  LN  ++  G+ P+ANPRNAA+G LR+ +P+    R L+  VHG+       A  
Sbjct: 195 SDKFADLNASLVEQGKPPFANPRNAAAGSLRQKDPSITAQRPLHMLVHGIAAWQSGDAGA 254

Query: 254 QYEMLQK-----MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           Q    Q      +R  G P++   R   T   + +Y  E    R  L ++IDG+V KVD 
Sbjct: 255 QEPTQQSQVYDLLRDWGMPISPYYRVCTTQDDVHAYITEFGERRHELLHEIDGIVVKVDN 314

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +R+PRW  ++K+  ++ +T+LLDI +Q+GRTG +TP A +EPV + G+ +
Sbjct: 315 IALQEELGYTSRAPRWACAYKYPPEEVTTKLLDIRVQVGRTGRVTPFAVMEPVLVAGSTV 374

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN   +K         R G  + +GD V++++AG+VIP+V+  +   R    + F
Sbjct: 375 SRATLHNAHEVK---------RKG--VLIGDDVVIRKAGDVIPEVLGPVTANRDGSERAF 423

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C + +      K G      RC     C AQ   RL +  SR A +IE LG+
Sbjct: 424 VMPTHCPDCGAELYEQ---KEGD--KDLRCPNSETCPAQVANRLAYLASRAALDIELLGE 478

Query: 489 QQL--------DFFFKSEDPAFSIRI----PADIFTLQRRQQTSTTKIENILGF------ 530
           +          +   KSE   F + +      +I    ++    T +IE +  F      
Sbjct: 479 EASLALTQPLGEPPLKSEAGLFDLTVDDLGEVEIEREVKKNGVPTGEIERVKYFFTKEEL 538

Query: 531 -------GDV--------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
                  G V        +   + D I K +   L R + +L IRHVG   AR +A ++ 
Sbjct: 539 YASGEKKGQVKKPSQPRANTLAMLDEIEKAKGQPLWRVLVALSIRHVGPTAARDIAAHFR 598

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--- 632
           S       + N    +      L+ V  VG+ IAQ++V+++    +   V++  K     
Sbjct: 599 SMDA----VRNATVED------LLEVEGVGETIAQSVVDWFAEEWHAHIVDSWAKAGVRM 648

Query: 633 --SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
              P+    E      +E   +V TG+L    R   +E +   G   S+ +S+KTD ++ 
Sbjct: 649 ADEPA---EESTQPQTLEGLTIVATGSLDNFTRDGIKESIVGAGGKASSSVSKKTDYVVA 705

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G+N GSKL KAQ LGV ++NEEQF  LL
Sbjct: 706 GENAGSKLTKAQDLGVPVLNEEQFQQLL 733


>gi|298484007|ref|ZP_07002176.1| DNA ligase, NAD-dependent [Bacteroides sp. D22]
 gi|298269788|gb|EFI11380.1| DNA ligase, NAD-dependent [Bacteroides sp. D22]
          Length = 666

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 234/713 (32%), Positives = 370/713 (51%), Gaps = 63/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P  +
Sbjct: 4   KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ +   
Sbjct: 117 SISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N + + +R L+ +++ L     +   G Y
Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK L
Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429
            D I+GL           D+ +GD V V++ GE+IPK+  +       DA+ F       
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP C S++VR      G+  AAH C    AC  Q   +++HF+SR A NI+GLG +
Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F++       I   AD++ L      +   I+ +   G+ S  N+   I + + + 
Sbjct: 454 TVDMFYR----LGLIENTADLYKL------TADDIKGLDRMGEKSAENIVTGIAQSKTVP 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IA
Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666
           Q+I+ ++ N  N   V   LKE    + R E+++S    ++  + +V +G      R + 
Sbjct: 554 QSILAYFANESNRELVNR-LKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEY 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +E + + G      +S KT  I+ GDN G +KLEK ++LG+ I++E++FL L+
Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKVKKLGITILSEDEFLKLI 665


>gi|302023934|ref|ZP_07249145.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05HAS68]
 gi|330832985|ref|YP_004401810.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3]
 gi|329307208|gb|AEB81624.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3]
          Length = 652

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 221/682 (32%), Positives = 368/682 (53%), Gaps = 59/682 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YYQ  +P + D+EYD L R    +  A P+L     P+ P +++GG+M     K +H  P
Sbjct: 19  YYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHRVGGKMLDGFEKYSHVYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YE G  V  A R
Sbjct: 76  LFSLQDAFSREELEAFDQRV-----RKEFPQATYICELKIDGLSISLTYEAGNLVVGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  +P    L +PE ++  VRGE Y+ K  F  +N +    G   
Sbjct: 131 GDGSVGENITENLKRVADVP----LTLPEAVDITVRGECYMPKASFDRVNKQRQEAGEAE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++     SE  A  Q ++L+K+  LGF  N+ 
Sbjct: 187 FANPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSE--ATSQSQVLEKLDALGFVTNHE 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A +      +  ++   R  LPY+IDG+V KV++ ++Q++LG   ++PRW +++KF 
Sbjct: 245 YCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR+GD V+V +AG++IP V+  +V++   + +    PS CP CQS    DL     +
Sbjct: 354 EKDIRIGDTVIVYKAGDIIPAVLK-VVDKYRKEQEIMPIPSHCPSCQS----DLQHYEDE 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           +  A RC   + C +Q + +L+HF SRDA NI GLG   ++  F     A  +   ADI+
Sbjct: 409 V--ALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLFG----AGLVHDVADIY 461

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L      +   +  + GF + S   LY +I   ++ S E  +F LGIRHVG++ ++ L 
Sbjct: 462 KL------TVDDLLTLEGFKEKSADKLYQAIQTSKSNSAECLLFGLGIRHVGSKASKILV 515

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + +   +  A      IA           +  +G +IA+++  F+ +      + A LKE
Sbjct: 516 EKFGDLETLAFADQEAIAS----------LEGLGQVIAKSLTTFFAS-EGAQQLLAELKE 564

Query: 632 VSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
              ++    + V  ++ +    +V TG L++++R++A+  +  LGA V+  +S+KT++++
Sbjct: 565 AKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGANVAGSVSKKTNLVV 624

Query: 690 VGDNPGSKLEKAQQLGVKIMNE 711
            G + GSKL KAQ+LG++I +E
Sbjct: 625 AGTDAGSKLTKAQELGIEIKDE 646


>gi|312194886|ref|YP_004014947.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c]
 gi|311226222|gb|ADP79077.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c]
          Length = 755

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 229/709 (32%), Positives = 356/709 (50%), Gaps = 63/709 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSI 93
           YY  + P + D+EYD L R   A+   +P L     P+ P  K+  E    LF+ VTH  
Sbjct: 51  YYVLAAPTVSDAEYDVLYRELVALEERYPAL---RTPDSPTQKVT-ETPSELFEPVTHLE 106

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             LSL+  ++ ++ + +  R       K+ +   +  E KIDG  + + YE G  V AA 
Sbjct: 107 RLLSLDNAFDEDEFQAWAAR-----ATKETSVAAWLCELKIDGLAVDLVYEDGVLVRAAT 161

Query: 154 RGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDG  GED++A IR + ++P R+   N+P ++EVRGEV+     F+ALN+ ++A G+KP
Sbjct: 162 RGDGRVGEDITANIRTLRSVPARLRGPNVPALLEVRGEVFFPVAAFVALNESLVADGKKP 221

Query: 213 YANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           YANPRN A+G LR+ +P    +R L  +VHGLG         Q    + +  LG P++  
Sbjct: 222 YANPRNTAAGSLRQKDPQVTASRGLAMYVHGLGARRGFDPPSQSAAYEALAELGLPISPR 281

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            R       +++Y  E    R  + ++IDG+V KVD+ + Q +LG  +++PRW I++K+ 
Sbjct: 282 YRVVGDVDAVLAYIREWGEHRHDVEHEIDGVVVKVDDLATQGRLGATSKAPRWAIAYKYP 341

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++ +TRL  I++ +GRTG +TP   LEPV + G+ +  ATLHN D +K           
Sbjct: 342 PEEVTTRLKSIEVNVGRTGRVTPFGVLEPVTVAGSTVGLATLHNADQVK----------- 390

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            + + +GD +++++AG+VIP++V  +V+ R    + F FP+ CP C + +VR      G+
Sbjct: 391 AKGVLIGDMIILRKAGDVIPEIVGPVVDLRDGTEREFVFPTHCPECGTELVR----PEGE 446

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC   + C AQ+ E + H  SR A +I+GLG +      +    A  ++  AD+F
Sbjct: 447 --ADTRCPNTVGCPAQRREAIIHLASRGALDIDGLGGESAIDLIE----AGRVKDIADVF 500

Query: 512 TLQRRQQTSTTKIENILGFGDVS--------------------VTNLYDSINKRRNISLE 551
            L  R  T     E I    D +                       +   I   R+  L 
Sbjct: 501 HLDERSFTGMPLFERIETVRDENGKLVKGPDGKALRRSVLGKKAEQVLKGIEAARHRPLW 560

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  L IRHVG   A++LA+          E+ +  A        L  V  VG  IA A
Sbjct: 561 RLLVGLSIRHVGPSAAQALAR----------ELRSTDAIRAASLEELAVVDGVGPTIAAA 610

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +VE++ +PR++  VE L                  +    +V TG+L+   R  A E V 
Sbjct: 611 VVEWFADPRHLDLVERLRAGGVTLADEGADEGPRPLAGVTVVITGSLEGYTRDSATEAVQ 670

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LG  VS  +S+KT  +I G+N G+K +KA  L V I++E     LL +
Sbjct: 671 NLGGKVSGSVSKKTSFVIAGENAGTKYDKAVSLKVPILDEAGLRVLLTE 719


>gi|158312936|ref|YP_001505444.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
 gi|254781334|sp|A8L538|DNLJ_FRASN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158108341|gb|ABW10538.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
          Length = 703

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 221/712 (31%), Positives = 351/712 (49%), Gaps = 48/712 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L +E+  H   YY   KP + D+EYDAL R  +AI    P+L     P+ P  K
Sbjct: 27  RGRAAELARELEEHAYRYYVLDKPTVADAEYDALMRELEAIEERHPEL---RTPDSPTQK 83

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           + G  +     V H    LSL+ ++  E+   +  R  R     +     +  E KIDG 
Sbjct: 84  VAGSYSTLFTPVEHLERLLSLDNVFTDEEFHAWAARAAR-----EQPVTAWLCELKIDGL 138

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            + + YE G+ V AA RGDG +GED++  +R + ++P R+    +PE++EVRGEV+    
Sbjct: 139 AVDLVYEGGRLVRAATRGDGRTGEDITPNVRTLASVPSRLRGPAVPELLEVRGEVFFPTE 198

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L+  VHGLG         Q 
Sbjct: 199 RFTELNAALVEAGKAPFANPRNAAAGSLRQKDPRVTASRPLDMIVHGLGAHQGFDVASQS 258

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
               ++  LG PV+       +   ++++       R  + ++IDG+V KVD+F  Q++L
Sbjct: 259 GAYARLAELGLPVSARHEVLASVEDVLAFVRRWGEHRHDVEHEIDGVVVKVDDFGQQRRL 318

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +++PRW ++ K+  ++ +TRL DI + +GRTG +TP   LEPV + G+ +  ATLHN
Sbjct: 319 GATSKAPRWAVAFKYPPEEVTTRLRDIQVNVGRTGRVTPFGVLEPVKVAGSTVAMATLHN 378

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D +           G + + +GD V++++AG+VIP++V  +V+ R    + F  P+ CP
Sbjct: 379 IDEV-----------GRKGVLIGDTVVLRKAGDVIPEIVSPVVDLRDGSERAFVMPTHCP 427

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C +++VR   P+    +   RC   ++C AQ  E + H  SR A +I+GLG +      
Sbjct: 428 ECGTQLVR---PEGEVDI---RCPNTVSCPAQLRESVFHLASRGALDIDGLGYETATVLL 481

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   I    D+F L      +    E + GF D  +  +   +   R+  L R + 
Sbjct: 482 AE----GRIHDIGDVFHL------APESFEGLRGFADKKIEQILRGLEAARDRPLWRLLV 531

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            L IRHVG   AR LA+   S    A      +A           V  VG  IA A+V++
Sbjct: 532 GLSIRHVGPTAARGLARELRSLDAIATAPAERLAA----------VDGVGPKIADAVVDW 581

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + +PR+   V  +                  ++   +V TGTL    R  A E V   G 
Sbjct: 582 FADPRHRDIVARIASGGVRLADEGAGEGPGPLDGVVVVITGTLDGWSRDTATEAVQSRGG 641

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            V+  +S+KT  ++ G +PG SK +KA+ L + +++E  F  LL+      R
Sbjct: 642 KVTGSVSKKTTFVVAGADPGASKYDKARTLKIPLLDEAGFAVLLRDGADAAR 693


>gi|256844676|ref|ZP_05550161.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN]
 gi|256613217|gb|EEU18421.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN]
          Length = 668

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 222/710 (31%), Positives = 379/710 (53%), Gaps = 55/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++     P
Sbjct: 4   ITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG+++    KV H IP LS+  +++  +L+ F  R+    QK   + + + +E
Sbjct: 61  DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRM----QKLVGHPVEYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++      E  
Sbjct: 175 YMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEI 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++ +QKM  LGF  N   R+  T   + ++ +E  + R++L Y IDG+V K+D+  
Sbjct: 235 T-SQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLG 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +  
Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             + IR+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 354 ASLHNPDYL-----------NEKGIRIGDTVKLHKAGDIIPEISEVVMAKRSADSVAYQI 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG + 
Sbjct: 403 PTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +++  +  S+
Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAQLDHFKEKSINNLLTALDNSKQNSV 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  I  LGI HVGA+ AR +          AQ+  N+    + D   +  +  +G  IA+
Sbjct: 506 ELLITGLGIDHVGAKAARLI----------AQKFKNLAKIMSLDVQEIASIDTIGMTIAE 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-----NKKLVFTGTLQKIQRHK 665
           ++  ++  P     ++  L+E   ++     +  +EIE     +K +V TG L+   R +
Sbjct: 556 SMTTYFAQPEAQKVIDE-LRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
             + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +
Sbjct: 615 FTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAI 664


>gi|88803633|ref|ZP_01119157.1| putative DNA ligase [Polaribacter irgensii 23-P]
 gi|88780366|gb|EAR11547.1| putative DNA ligase [Polaribacter irgensii 23-P]
          Length = 665

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 230/709 (32%), Positives = 369/709 (52%), Gaps = 60/709 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L  E++ H+  YY     +I D ++D   ++ + +    P L    D N P  
Sbjct: 3   AAQTIQLLRDELNTHNYNYYVLDNGMISDFDFDVKLKKLEQLEKENPLLF---DANSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG +  +   V H     SL+  ++ EDL  +  R+ +       +++ +T E K DG
Sbjct: 60  RVGGAVTKNFNTVVHKNRMYSLDNSYSKEDLLDWEKRVEKVL---GSSALEYTCELKFDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I + YE G+FV A  RGDG  G++V+  I+ I +IP  LS +     E+RGE+ +  +
Sbjct: 117 ASINLTYENGQFVKAVTRGDGFQGDEVTNNIKTIRSIPLSLSADFVHNFEMRGEIILPLD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F ++N E IA G + Y NPRN ASG L+  +  ++  R L+  ++ +  TSE   K  +
Sbjct: 177 GFNSMNAERIANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQI-VTSERKYKTHF 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           E L+  R +GF V   ++   +   +   VSY++E    R  LPY+ DG+V KV++   Q
Sbjct: 236 ESLENARRVGFKVPKAIKLVKSIDAVFDFVSYWDEK---RHDLPYETDGIVIKVNDLQQQ 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  A++PRW I++KF   Q +T L  I  Q+GRTG +TPVA L PV + G  +  A+
Sbjct: 293 EELGYTAKAPRWAIAYKFKATQVTTILNAISYQVGRTGAITPVANLNPVQLAGTTVKRAS 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L           DIR  D V V++ GE+IPK+  +    R  +++P  + +
Sbjct: 353 LHNADQIEKL-----------DIREKDTVFVEKGGEIIPKITAVDFTRRLENSEPTRYAT 401

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +VR          A H C     C+ Q   R++HF+SR A +IEGLG + +D
Sbjct: 402 NCPECNTLLVRSEGD------AKHYCPNEFGCAPQITGRIQHFISRKAMDIEGLGGETVD 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              K       I+  AD++ L   Q     ++       + S  N+   I K + I  E+
Sbjct: 456 LLRKEG----CIQNYADLYDLTVEQVIPLERM------AEKSAQNMIAGIEKSKEIPFEK 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGIR VG  +A+ LAKY+ S  N              ++  LI V  +GD IAQ+I
Sbjct: 506 VLFALGIRFVGETVAKKLAKYFKSIDNLMHA----------EFEVLISVDEIGDRIAQSI 555

Query: 613 VEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           ++F  +  NI  +  L       EVS  I    +N +  ++ +  V +G   ++ R++ +
Sbjct: 556 IDFSSDEGNIQLINRLKSYGVQLEVSAEI---LENQTELLKGQVFVVSGVFHQLSRNELK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
           + +   G  VSA +S+KT+ I+ GDN G SKL KAQ LG++I++E+  +
Sbjct: 613 KAIEDNGGKVSASISKKTNYIVAGDNMGPSKLTKAQDLGIEIISEQNLI 661


>gi|238855396|ref|ZP_04645707.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3]
 gi|260665363|ref|ZP_05866211.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US]
 gi|282932093|ref|ZP_06337550.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
 gi|238831994|gb|EEQ24320.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3]
 gi|260560867|gb|EEX26843.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US]
 gi|281303772|gb|EFA95917.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
          Length = 669

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 237/721 (32%), Positives = 392/721 (54%), Gaps = 68/721 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+ + A++E+ +L ++++   + YY    P + D+ YD   +R   +   FP+L  S+  
Sbjct: 4   LNKKAAQEEIENLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQRLVELEKQFPELVTSDSI 63

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++GGE+   L KV H IP LS+  +++ ++LR+F  RI    QK     + + +E
Sbjct: 64  T---QRVGGEIKSDLGKVEHQIPMLSMGDVFSKDELREFDQRI----QKLVGGPVAYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRG 189
            KIDG  +++ Y  GK V A+ RG+G  GEDV+  ++ I  IP+ L    PE   +EVRG
Sbjct: 117 LKIDGLSLSLEYSDGKLVRASTRGNGRIGEDVTKNVQYISDIPKTL----PEALTMEVRG 172

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTS 247
           E Y+ K  FL LN E    G   +ANPRNAA+G LR+L+P     R L+ F++  +    
Sbjct: 173 ECYMGKEAFLKLNTERDENGEAVFANPRNAAAGSLRQLDPQVTKKRNLSTFIYTWVNPPK 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           EI +  Q++ +Q+M  LGF  N   ++     G+ +Y +E  S R +L Y IDG+V KVD
Sbjct: 233 EITS--QHQAIQQMAKLGFHTNETGKRLANLDGVFAYIDEYTSKRDSLSYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQKQLG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PV + G  
Sbjct: 291 DLTLQKQLGNTVKVPRWEIAYKFPPEEQETIVHEIVWTVGRTGVVTPTAVMDPVELAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A LHN D +K            +D+R+GD V + +AG++IP++ ++++++R  D++ 
Sbjct: 351 VSRAVLHNPDLLK-----------QKDVRIGDTVRLHKAGDIIPEISEVVLSKRPVDSKV 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C   +V       G++  A RC    AC AQ  E + HF SR A +I GLG
Sbjct: 400 YEIPDKCPSCGQALVH----LEGEV--ALRCINP-ACPAQIEEGIIHFASRPAMDIMGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +    +       ++  AD++ L      +   +  +  FGD S+ NL  +I+  R 
Sbjct: 453 PKIVRQLIQHN----LVKDIADLYHL------TADDLAELDHFGDKSINNLLTAIDNSRQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +  LGI HVGA+ A       L  Q F + +N I+  +  +   L  +  +G+ 
Sbjct: 503 NSVELLLNGLGIDHVGAKAA------LLIVQRF-KNLNKIMQASVSE---LTAIDTIGET 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSE------IENKKLVFTGTL 658
           IA++I  ++       +V+ L++E+  S   I    ++VS+E       +NK +V TG L
Sbjct: 553 IAESITTYFAQ----ASVQKLVQELIDSGVNIDYLGEDVSNEEIADNFFKNKTVVLTGKL 608

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               R +  + +  LGA V+  +S+KTD +I G + GSKL KA+ L + ++ EE+ +  +
Sbjct: 609 AHFTRSEFTKKLESLGAKVTGSVSKKTDYVIYGTDAGSKLTKAESLQIALLTEEEAIEKI 668

Query: 719 Q 719
           Q
Sbjct: 669 Q 669


>gi|332361975|gb|EGJ39777.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK49]
          Length = 652

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 229/698 (32%), Positives = 369/698 (52%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  R+     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRV-----RKEFPQVSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++     +++ +  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++L
Sbjct: 229 EVLNKLADLDFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EALEVPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTIENLLELEN---FKEKSANKLYTAIQASKKNSAERLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDILRLSQASQEEIAA----------IDSLGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LG
Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 610 ANVSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDED 647


>gi|58336856|ref|YP_193441.1| DNA ligase [Lactobacillus acidophilus NCFM]
 gi|227903415|ref|ZP_04021220.1| DNA ligase [Lactobacillus acidophilus ATCC 4796]
 gi|75357942|sp|Q5FLL4|DNLJ_LACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|58254173|gb|AAV42410.1| DNA ligase [Lactobacillus acidophilus NCFM]
 gi|227868891|gb|EEJ76312.1| DNA ligase [Lactobacillus acidophilus ATCC 4796]
          Length = 668

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 222/713 (31%), Positives = 384/713 (53%), Gaps = 61/713 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++++A+KE S L  ++    D YY    P + D+ YD    R   +   FP++     P
Sbjct: 4   ITLDEAKKEASLLRNQLDKWADAYYSKDAPEVEDNVYDQKYSRLLELEKQFPEIVT---P 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GGE++    KV H+IP LS+  +++ ++L+ F  R+    QK   + + + +E
Sbjct: 61  DSITQRVGGEIDSDFTKVEHAIPMLSMGDVFSKDELKDFDQRM----QKLVGHPVEYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GK + A+ RG+G+ GEDV+A  R I  IP+ L    P  IEVRGE 
Sbjct: 117 LKIDGLSLSLEYENGKLMRASTRGNGYVGEDVTANARYIADIPQTLPE--PLTIEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN+E    G   +ANPRNAA+G LR+L+P     R L+ F++      E  
Sbjct: 175 YMGKEAFAKLNEERENEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEDI 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q+E +++M+ LGF  N   ++  +   I ++ +E  + R +L Y IDG+V K+D+ +
Sbjct: 235 T-SQHEAIKRMQELGFHTNETGQKLASLEEIFAFIDEYTARRDSLAYGIDGIVLKIDDLN 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +++ LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +  
Sbjct: 294 IERSLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             +D+R+GD V + +AG++IP++ ++++++R  D+ P+  
Sbjct: 354 ASLHNPDYL-----------NEKDVRLGDTVKLHKAGDIIPEISEVVLSKRPVDSVPYVI 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG + 
Sbjct: 403 PENCPSCGHKLVHLQDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     ++     +   AD++ L      S   +  +  F + S+ NL  +I+  +  S+
Sbjct: 456 VKQLIAND----LVHNVADLYHL------SAEDLAQLDHFKEKSINNLLTAIDNSKKNSV 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  I  LGI HVGA+ AR +A+    ++N A+    I++    D   L  +  +G  IA+
Sbjct: 506 ELLITGLGIDHVGAKAARLIAQ---KFKNLAK----IMSLGVQD---LASIDTIGMTIAE 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS------IGRHEKN--VSSEIENKKLVFTGTLQKIQ 662
           ++  ++  P      + ++ ++  S      +G  E      +  ++K +V TG L+   
Sbjct: 556 SMTTYFAQPE----AQEMIADLEKSGLNMEYLGEDEPEDIPDNPFKDKTVVLTGKLEHYT 611

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           R +  + +  LGA V+  +S+KT+ +I G + GSK  KA+QLG+ ++ EE+ +
Sbjct: 612 RSEFTKRLQALGAKVTGSVSKKTNYVIYGQDAGSKYNKAEQLGIPLLTEEEAI 664


>gi|223932796|ref|ZP_03624793.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591]
 gi|223898505|gb|EEF64869.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591]
          Length = 652

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 220/682 (32%), Positives = 372/682 (54%), Gaps = 59/682 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YYQ  +P + D+EYD L R    +  A P+L     P+ P +++GG+M     K +H  P
Sbjct: 19  YYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHRVGGKMLDGFEKYSHVYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YE G  V  A R
Sbjct: 76  LFSLQDAFSREELEAFDQRV-----RKEFPQATYICELKIDGLSISLTYEAGNLVVGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  +P    L +PE ++  VRGE Y+ K  F  +N +    G   
Sbjct: 131 GDGSVGENITENLKRVADVP----LTLPEAVDITVRGECYMPKASFDRVNKQRQEAGEAE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++     SE  A  Q ++L+K+  LGF  N+ 
Sbjct: 187 FANPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSE--ATSQSQVLEKLDALGFVTNHE 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A +      +  ++   R  LPY+IDG+V KV++ ++Q++LG   ++PRW +++KF 
Sbjct: 245 YCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR+GD V+V +AG++IP V+  +V++   + +    PS CP CQS    DL     +
Sbjct: 354 EKDIRIGDTVIVYKAGDIIPAVLK-VVDKYRKEQEIMPIPSHCPSCQS----DLQHYEDE 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           +  A RC   + C +Q + +L+HF SRDA NI GLG   ++  F     A  +   ADI+
Sbjct: 409 V--ALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLFG----AGLVHDVADIY 461

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L      +   +  + GF + S   LY +I   ++ S E  +F LGIRHVG++ ++ L 
Sbjct: 462 KL------TVDDLLTLEGFKEKSADKLYQAIQTSKSNSAECLLFGLGIRHVGSKASKILV 515

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + +   +         +A  + + ++L+    +G +IA+++  F+ +      + A LKE
Sbjct: 516 EKFGDLET--------LAFADQEAIALLEG--LGQVIAKSLTTFFAS-EGAQQLLAELKE 564

Query: 632 VSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
              ++    + V  ++ +    +V TG L++++R++A+  +  LGA V+  +S+KT++++
Sbjct: 565 AKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGANVAGSVSKKTNLVV 624

Query: 690 VGDNPGSKLEKAQQLGVKIMNE 711
            G + GSKL KAQ+LG++I +E
Sbjct: 625 AGTDAGSKLTKAQELGIEIKDE 646


>gi|119487266|ref|ZP_01621017.1| DNA ligase [Lyngbya sp. PCC 8106]
 gi|119455821|gb|EAW36956.1| DNA ligase [Lyngbya sp. PCC 8106]
          Length = 685

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 227/703 (32%), Positives = 369/703 (52%), Gaps = 56/703 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L Q++      YY    PII D+ YD L R    +   +P L     P+ P  +
Sbjct: 9   QQRVQKLSQQLHLASYAYYVLDAPIIEDAIYDQLYRELQQLETDYPQLI---TPDSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD----NSIFFTLEPK 133
           +G +       V H+IP  SLE  +N E+L+ +  R  +  + +D     +   +  E K
Sbjct: 66  VGEKPATQFTSVRHNIPLYSLENAFNTEELKAWDGRWKKVLKTEDKEINYSEPLYICELK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           IDG+ + + YE G  V    RGDG +GE+++  ++ I +IP  L L + P I+EVRGE +
Sbjct: 126 IDGSALALTYENGILVRGTTRGDGVTGEEITQNVKTIRSIPLRLKLESPPSIVEVRGEAF 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG-KTSEIF 250
           +S N F  +N E        +ANPRNAA+G LR+L+   + +R L+FF + +  +  EI 
Sbjct: 186 LSLNIFAKINQERQQKDESLFANPRNAAAGTLRQLDSRIVRSRQLDFFAYTVHLEGEEIN 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q++ L+ ++ +GF VN   +  ++   + +Y+ +  S R  L Y  DG+V K++  S
Sbjct: 246 LKTQWDCLELLQEMGFKVNPNRQLCHSLTEVQNYFEDWDSRRQNLSYMTDGVVVKINPLS 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG   + PRW I+ K+  ++A T+LL + +Q+GRTG LTPVA LEP+ + G  +  
Sbjct: 306 LQEQLGFTQKFPRWAIALKYPAEEAPTKLLAVTVQVGRTGALTPVAELEPLQLAGTTVQR 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L           D+ +GD V+V++AGE+IP+VV  +   R  +AQPF  
Sbjct: 366 ATLHNSDRIAEL-----------DLHIGDTVIVRKAGEIIPEVVRNLPELRPTNAQPFQM 414

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C   VV+   P+T    A  RC    +C A     L H+ SRDA +I G+G++ 
Sbjct: 415 PTHCPECGQAVVK---PQTE---AVTRCI-NTSCPAILRGSLIHWCSRDAVDINGVGEKL 467

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    + +     I   AD++ L      +  K+  +   G+ S T + +++ + +    
Sbjct: 468 VQQLVERK----LISSVADLYEL------TVEKLTQLERIGEKSATKIVNAVTESKTQPW 517

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++ LGIRHVG+  A  L + +L+ +  A      I            V  +G  IA 
Sbjct: 518 ARVLYGLGIRHVGSVNAELLTQKFLTVEQLADSTPADIEG----------VYGIGTEIAF 567

Query: 611 AIVEFYQNPRNICAVEALLK-------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++ E+++ P N   +E L +       + SP     +K     +  K  V TGTL  ++R
Sbjct: 568 SVEEWFKVPANQALIERLKQQGLNLASQPSPESSLSQKQ-DLNLSGKTFVLTGTLPNLKR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
            +A++ +   G  V+  +S KTD ++VG++ GSKL+KAQ+L +
Sbjct: 627 DEAKKLIQNAGGKVTGSVSSKTDYVVVGEDAGSKLKKAQELEI 669


>gi|154148661|ref|YP_001406577.1| NAD-dependent DNA ligase LigA [Campylobacter hominis ATCC BAA-381]
 gi|166215571|sp|A7I236|DNLJ_CAMHC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|153804670|gb|ABS51677.1| DNA ligase, NAD-dependent [Campylobacter hominis ATCC BAA-381]
          Length = 645

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 233/693 (33%), Positives = 377/693 (54%), Gaps = 74/693 (10%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P+  D EYD L ++ +   + FPDL  S  P    N++G  ++    K+ H  
Sbjct: 19  AYYTQDNPLATDIEYDVLYKKVETFENEFPDLKVSYSPT---NRVGDAVSEGFEKINHKA 75

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
              S+E I++  +L  ++ R        +   + F +EPK DG  + + YE G  + A  
Sbjct: 76  KMWSMEDIFDDNELLAWLER-------GEKAGLEFFVEPKFDGASLNLTYENGVLISAGT 128

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RG+G +GE+V+  ++ I +IP  L ++  E IE+RGEV I+K+DF ALNDE    G   +
Sbjct: 129 RGNGETGENVTQNVKVINSIP--LQIDYKEKIEIRGEVVIAKSDFDALNDERANSGENLF 186

Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+   + +R+L FF   +G+ S  F K   E+++ +R LGF  ++ V
Sbjct: 187 ANPRNAAAGSLRQLDSAVVKSRHLKFFPWDVGENSLNFKK-HSEIMEFVRNLGFLKDDFV 245

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R   +   +   Y ++  +R      +DG+V +++E +  + +G   + PR+M+++KF  
Sbjct: 246 RVCASLTDLRKAYVDLHEMRERKDILMDGMVIRINELTKCENMGYTIKFPRFMVAYKFPP 305

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            + +T+L+DI++Q+GRTG++TPV  LEPVNI GA + NATLHN D I  L     +M+  
Sbjct: 306 VEKATKLIDINLQVGRTGVITPVGVLEPVNIDGATVRNATLHNFDEIARLG----LMK-- 359

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR-VVRDLNPKTGK 451
                GD V + R+G+VIPK+  +    R+    P   P FCP+C SR +V D+      
Sbjct: 360 -----GDIVSIIRSGDVIPKITGVFGARRNGSETPIKRPEFCPVCGSRLLVEDI------ 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
                RC   L C A+ +  L +F S+   NI+GLG+  ++  F+       I   +DI+
Sbjct: 409 ---FIRCQ-NLTCKARIVNSLIYFCSKKCMNIDGLGEAIINTLFEKG----KIINISDIY 460

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+         +E + GF D  ++NL  SI   R   L RFI +LGI H+G   AR +A
Sbjct: 461 TLK------ADDLEGLEGFKDKKISNLLASIENSRISPLYRFITALGIEHIGEVAARKIA 514

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLS-----LIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           + +                  ++WL+     ++++   G+ +A++ V F +  R    +E
Sbjct: 515 EIF-----------------GENWLNASFDEILKIDGFGEAMAKSFVGFCEINRE--KIE 555

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKK-LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
            LL  +  S  + E  +S  +  KK +V TGTL  I R + +E + ++GA V+  +S+KT
Sbjct: 556 NLLSFLHLSAQKTE--ISQNVFTKKTVVITGTLS-ISRDEMKEKLIKMGANVTNSVSKKT 612

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           D ++ G + GSKLEKA+ LGVK ++E++F  +L
Sbjct: 613 DFVLFGKDAGSKLEKAKMLGVKAISEDEFKEML 645


>gi|34499358|ref|NP_903573.1| DNA ligase [Chromobacterium violaceum ATCC 12472]
 gi|81654398|sp|Q7NR81|DNLJ_CHRVO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|34105208|gb|AAQ61564.1| DNA ligase [Chromobacterium violaceum ATCC 12472]
          Length = 821

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 229/663 (34%), Positives = 354/663 (53%), Gaps = 94/663 (14%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L + ++ +   YY    P + D+EYD L R   A+  A P+LA S+ P     ++GG 
Sbjct: 27  AELRELLNRYGHEYYVLDAPTVPDAEYDRLFRELQALEEAHPELAVSDSPT---RRVGGA 83

Query: 82  MNLSLFKVTHSIPTLSLEKIWN-------IEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
                  V H++P LSL   ++        E   + I    R  +  D   + +  EPK 
Sbjct: 84  PLDEFVSVVHAVPMLSLSNAFSDMQLTDPAERHSELIQFDERVRKGLDAAEVEYATEPKF 143

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  I++ YE G    AA RGDG +GE V+  +R I  IP  L   N P ++EVRGEV +
Sbjct: 144 DGLAISLLYENGVLTRAATRGDGVAGEQVTENVRTIRAIPLKLDGANPPALLEVRGEVLM 203

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT--SEI 249
            K DF  LN + IA G K +ANPRNAA+G LR+L+ + IT  R L+FF + + +   ++ 
Sbjct: 204 LKRDFERLNADQIARGDKTFANPRNAAAGSLRQLD-SRITAQRRLSFFAYSIAQVGGADW 262

Query: 250 FAKGQYEMLQKMRCLGFPV-NNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            A    EM   ++ LGFPV  + +R   +   G+  YY  + + R+ LP++IDG+VYKV+
Sbjct: 263 PATHAGEMAW-LKTLGFPVVMDSLRPVVSGAAGLAGYYEAVLTARAGLPFEIDGVVYKVN 321

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q+ LG  +R+PRW I+HKF  ++A T +  I+ Q+GRTG +TPVARL+PV +GG  
Sbjct: 322 RRDQQEALGFVSRAPRWAIAHKFPAEEALTCVEAIEEQVGRTGAITPVARLKPVFVGGVT 381

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER------ 421
           +TNATLHNED ++            +D+RVGD V+V+RAG+VIP+VV +++ +R      
Sbjct: 382 VTNATLHNEDEVR-----------RKDVRVGDTVVVRRAGDVIPEVVSVVLAQRPMQPAE 430

Query: 422 ---------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
                     P    +  P+ CP+C S VVR+     G+ +A  RC+GGL+C AQ+ + +
Sbjct: 431 GGDLFSAGEEPRYPAYRLPTACPVCGSHVVRE----EGEAIA--RCSGGLSCRAQRSQAI 484

Query: 473 KHFVSRDAFNIEGLGKQQLD-----FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
           +HF  R   +I+GLG++ +D      + +     + +++  D+  ++RR           
Sbjct: 485 QHFAGRRMMDIDGLGERYIDKLVEYGYVQGVADLYRLKL-EDLLEMKRRADEDEGVTPET 543

Query: 528 LGFGDVS---VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           +  G V+     NL ++I+  R   L R +F+LGIRHVG   A++LA             
Sbjct: 544 VKAGKVASKWAENLIEAIDASRAPPLARLLFALGIRHVGESTAKTLA------------- 590

Query: 585 NNIIAHNNDDWL---SLIR---------VPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
                    DWL   +LIR         +P +G ++A ++ +F+    N  A++ALL EV
Sbjct: 591 ---------DWLGTMALIRRCPAALFAALPDIGGVVADSLADFFAEDNNEKALDALLAEV 641

Query: 633 SPS 635
            P+
Sbjct: 642 KPA 644



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K LV TGTL  + R +A+  +   G  VS  +S+KT  ++ G+  G KL KAQ+LGV I
Sbjct: 749 GKTLVLTGTLPTLSRDQAKALIEAAGGKVSGSVSKKTHYVVAGEEAGGKLAKAQELGVAI 808

Query: 709 MNEEQFLFLL 718
           ++E     LL
Sbjct: 809 LDEAGLQALL 818


>gi|118470314|ref|YP_886705.1| NAD-dependent DNA ligase LigA [Mycobacterium smegmatis str. MC2
           155]
 gi|166216211|sp|A0QUW7|DNLJ_MYCS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118171601|gb|ABK72497.1| DNA ligase, NAD-dependent [Mycobacterium smegmatis str. MC2 155]
          Length = 701

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 232/717 (32%), Positives = 364/717 (50%), Gaps = 59/717 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+    L  E+  H   YY    PII D+E+D L R   A+  A P+L     P+ P   
Sbjct: 22  RRRWQELADEVREHQFRYYVKDAPIISDAEFDKLLRELQALEDAHPEL---RTPDSPTQL 78

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +GG    + F    H    LSL+ +++ ++L  +  RI      +  ++  F  E KIDG
Sbjct: 79  VGGAGFATEFAPAEHLERMLSLDNVFDSDELTAWAARI----SSETGDAAHFLCELKIDG 134

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVY 192
             +++ Y  G+    A RGDG +GEDV+   R I  IP  L+      +P ++EVRGEV+
Sbjct: 135 VALSLVYRDGRLERGATRGDGRTGEDVTLNARTIDDIPERLTPSDEFPVPAVLEVRGEVF 194

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  ++A G+ P+ANPRN+A+G LR+ NP     R L    HG+G T     
Sbjct: 195 FRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGYTEGFTP 254

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              ++  + +   G PV+    + +T   +   ++Y+ E    R  + ++IDG+V KVDE
Sbjct: 255 ASLHDAYRALGAWGLPVSEHTTKVSTVAEVAERIAYWGEH---RHDVEHEIDGVVVKVDE 311

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +R+PRW +++K+  ++A+T+LLDI + +GRTG +TP A +EPV + G+ +
Sbjct: 312 VALQRRLGATSRAPRWAVAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVKVAGSTV 371

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN   +K         R G  + +GD V++++AG+VIP+V+  +V+ R    + F
Sbjct: 372 GLATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGTEREF 420

Query: 429 SFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            FP+ CP C +    +L P K G   A  RC    +C AQ  ERL H   R AF+IEGLG
Sbjct: 421 EFPTHCPECGT----ELAPAKEGD--ADIRCPNSRSCPAQLRERLFHLAGRGAFDIEGLG 474

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQR----RQQTSTTKIENILGFGDVSVTNLYDSIN 543
            +       ++     I    D+FTL      R +  TTK   +   G   + NL     
Sbjct: 475 YEAATALLAAQ----VIPDEGDLFTLTADDLLRTELFTTKKGELSANGKRLLANL----T 526

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +   L R + +L IRHVG   AR+LA  + S +         +A              
Sbjct: 527 KAKEQPLWRVLVALSIRHVGPTAARALATEFGSLEAIEAASEEELAAVEG---------- 576

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG  IA A+ +++    +   V+             + ++   +E   +V TG+L    R
Sbjct: 577 VGPTIAAAVKDWFTVDWHRAIVDKWRAAGVRMADERDASIERTLEGLSIVVTGSLAGFSR 636

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A+E +   G   +  +S+KT  ++ GD PGSK +KA +LGV +++E+ F  LL+Q
Sbjct: 637 DQAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAVELGVPVLDEDGFRRLLEQ 693


>gi|33866919|ref|NP_898478.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 8102]
 gi|81573701|sp|Q7U3P1|DNLJ_SYNPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33639520|emb|CAE08904.1| Putative DNA ligase [Synechococcus sp. WH 8102]
          Length = 679

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 232/720 (32%), Positives = 370/720 (51%), Gaps = 63/720 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   EL SL    ++    YY    P++ D+ YD L R    +  A P L  ++ P   
Sbjct: 5   QQRAAELRSLLNRAAH---AYYVLDAPVMEDTLYDRLYRELQQLEQADPSLLSADSPT-- 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G         V H IP  SL+  ++  +L+ +  R+ +   + DD+ +    E KI
Sbjct: 60  -QRVGKAPATGFHSVEHRIPLQSLDNAFDHGELKAWHERLLKVLDRADDSPLPLVGELKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + Y  G    AA RGDG SGE+++A +R I +IP  L ++  PE +EVRGE +I
Sbjct: 119 DGNALALSYRHGVLERAATRGDGSSGEEITANVRTISSIPLRLQIDDPPEWVEVRGEAFI 178

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF-- 250
             + F A+N+E  A G   +ANPRNA +G LR+L+P  +  R L+FF + L   S+    
Sbjct: 179 PDDTFAAINNERAAHGDALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPSDHSNS 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q+++L  +   GF VN      +  +GI  + +  +  R  L Y  DG+V K+++  
Sbjct: 239 PECQWDVLAWLEQAGFRVNPNRELCDGLNGIERFCDRWEQQRHQLTYATDGVVVKLNDLR 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ + G   ++PRW I+ K+  ++A ++LL + +Q+GRTG +TPVA  EPV + G  ++ 
Sbjct: 299 LQDEAGTTQKAPRWAIALKYPAEEAPSKLLKLAVQVGRTGAVTPVAEFEPVALAGTSVSR 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L           D+ +GD V+V++AGE+IP+VV ++   R   A P   
Sbjct: 359 ATLHNADRIAEL-----------DLHLGDTVVVRKAGEIIPEVVRVLPELRPTGAVPLEL 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +VRD +       AA RC    +C A     L+H+VS+ A +++GLG + 
Sbjct: 408 PDHCPECGSNLVRDDSE------AATRCINS-SCPAILRGGLRHWVSKGALDVDGLGNKL 460

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    +       +R  AD++ L      S  ++      G+ S  NL  ++ + +    
Sbjct: 461 IQQLVER----GLVRSIADLYRLDAALLASLERV------GEKSAANLVAALEQSKQQPW 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            R ++ LGIRH+G   A++LA  Y +  +  A E  +I A +            +G  I+
Sbjct: 511 HRQLYGLGIRHIGEVNAKALAAAYPNSASLAAAEPESIAALHG-----------IGPEIS 559

Query: 610 QAIVEFYQNPRNI----------CAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTL 658
            ++ +++ NP N            ++EA   E++  S G  E N S  +  K LV TGTL
Sbjct: 560 SSLQQWHANPPNQRLLEDLRAVGLSLEANTSELNANSTG--EGNSSGALLGKTLVLTGTL 617

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R  A+  +   G  VS  +S+KTD ++ G+  GSKL KA+ LGV+I+ E +   LL
Sbjct: 618 PNLSRSDAKTLIEGAGGKVSGSVSKKTDYLVAGEAAGSKLSKAESLGVEILTEAELQKLL 677


>gi|284053772|ref|ZP_06383982.1| NAD-dependent DNA ligase LigA [Arthrospira platensis str. Paraca]
          Length = 683

 Score =  357 bits (915), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 226/716 (31%), Positives = 364/716 (50%), Gaps = 52/716 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I Q   +L    Q  SY    YY    PI+ D  YD L R    + + +P+L     P+ 
Sbjct: 12  ISQKLAQLRLTVQRASY---AYYVLDAPIMEDGVYDRLYRELQELENQYPELI---SPDS 65

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +       VTH+IP  SLE  +N+ +L+ +  +  RF          +  E K
Sbjct: 66  PTQRVGEKPAAQFQSVTHNIPLYSLENAFNMAELQAWDEKWRRFLGDSLPQDPKYICELK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           IDG+ I + Y  G  V    RGDG +GED++  ++ I +IP  L L N P ++EVRGE +
Sbjct: 126 IDGSAIALTYHNGILVRGVTRGDGVTGEDITQNVKTIRSIPLKLHLDNPPPVVEVRGEAF 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +S + F+ +N E    G   +ANPRNAA+G LR+L+P  +  R L+FF + L   S    
Sbjct: 186 LSNHIFVQINQERQQTGEPLFANPRNAAAGTLRQLDPRIVADRRLDFFAYTLHLDSPNL- 244

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++ L+ ++ +GF VN   +   +   +  Y++   + R  LPY  DG+V K++  SL
Sbjct: 245 HDHWDCLEFLQKMGFKVNPNRQLCQSLLEVQQYFDAWDTQRQQLPYMTDGVVVKLNSLSL 304

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QKQLGE  + PRW I+ K+  ++  T+++ +  Q+GRTG LTPVA LEP+ + G  +  A
Sbjct: 305 QKQLGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTVKRA 364

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D +  L           D+ +GD V+V++AGE+IP+VV ++ + R   A+  + P
Sbjct: 365 TLHNQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMP 413

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C   V++   P      A  RC    +C A     + H+  R A +I G+G++ +
Sbjct: 414 THCPECGETVIK--TPAE----AVTRCINS-SCPAIVRGSIIHWCQRPALDINGIGEKLV 466

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                ++     +R  AD++ L   Q     ++      G+ S   +  +I   +     
Sbjct: 467 HQLVDAQ----LVRSVADLYDLNMDQLLELDRM------GEKSAQKILAAIATSKQQPWH 516

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRHVG   A  LA+ + S Q+ A   +  I            V  +G  IA +
Sbjct: 517 RVLYGLGIRHVGKANADLLAQNFPSCQSLAAASSAQIEG----------VYGIGAEIATS 566

Query: 612 IVEFYQNPRNICAVEAL----LKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           + +++QNP NI   + L    L+  S PS        +     K  V TGTL  + R +A
Sbjct: 567 VYQWFQNPANISLCDRLQQAGLQLTSVPSTAPKSTPQAQPFAGKTFVLTGTLPTLSRDQA 626

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  +   G  V+  +++K D +++G+ PGSKL+KAQ L +  ++E  FL +++  N
Sbjct: 627 KSMIENAGGKVTNSVTKKVDYLLLGEKPGSKLKKAQDLAIANLSESDFLAMIKSAN 682


>gi|13235502|emb|CAC33764.1| DNA ligase [Rickettsia typhi]
          Length = 492

 Score =  357 bits (915), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 195/513 (38%), Positives = 316/513 (61%), Gaps = 33/513 (6%)

Query: 213 YANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G +R+L+      R L +F++  G T +  A  Q ++L K++ L F VN  
Sbjct: 1   FANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTEKNLASTQEQLLAKLKALSFSVNEI 60

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            + A++   I ++Y  +K+ R  LPY+IDG+VYK++ F++Q ++G  ARSPR+ I+HKF 
Sbjct: 61  SKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLNNFAMQNRMGFIARSPRFAIAHKFP 120

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
                T+LL I +Q+GRTG+LTPVA L+P+ IGG +++ ATLHN   I            
Sbjct: 121 AIIGQTKLLSITVQVGRTGMLTPVAELDPLEIGGVVVSRATLHNFQDI-----------A 169

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR---VVRDLNPK 448
            +D+R+ D V ++RAG+VIP++  + +++R  D   F  P FCP C S+   V  D+   
Sbjct: 170 RKDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVKFDTPVFCPSCNSKLRYVSEDI--- 226

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
                   RC  GL C AQ  ER+ HFVS++A +I GLG++Q+ F          I  P 
Sbjct: 227 ------IIRCDNGLNCPAQNYERICHFVSKNAMDIAGLGRKQVAFLIDKR----LISNPL 276

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           DIF L+++ +T+  ++EN+ G+G  SV NL+ +I K + ISL+RFI++LGIRH+G + A+
Sbjct: 277 DIFFLKKKNETNLIRLENMDGWGKKSVANLWQNIEKSQKISLQRFIYALGIRHIGEQNAK 336

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ ++SY NF  ++  +  +++D +  L  +  +GD +   I++F+    NI  ++ L
Sbjct: 337 LLAREFVSYNNFIAQMELLSKNDSDVYQKLNDLEGIGDKMLVDIIDFFYVKENIQLIKKL 396

Query: 629 --LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
             +  +       E+N+   +  K LVFTG+L+ I R +A+E   +LGA V++ +S  TD
Sbjct: 397 GAVLNIEDYKETREQNI---LTGKILVFTGSLKTISRVEAKEIAEKLGAKVASSVSSNTD 453

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++IVG N GSKL+KA++L +KI++E ++L  ++
Sbjct: 454 LLIVGVNGGSKLKKAKELNIKIIDEAEWLAFIK 486


>gi|289644234|ref|ZP_06476323.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata]
 gi|289505957|gb|EFD26967.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata]
          Length = 713

 Score =  357 bits (915), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 224/689 (32%), Positives = 353/689 (51%), Gaps = 48/689 (6%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L      +   +P L     P+ P  K+ G ++     V H   
Sbjct: 46  YYVLDSPTVSDAEYDQLMAELTQLETRYPGL---RTPDSPTQKVAGTISTLFTPVEHLER 102

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ ++   +   +  R+ R  + + D    +  E KIDG  + + YE G    AA R
Sbjct: 103 LLSLDNVFTEVEFEAWAARVTR--EAEVDA---WLCELKIDGLAVDLVYEDGYLARAATR 157

Query: 155 GDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GEDV+  IR +  +P R+   ++PE++EVRGEV+     F  LN  ++A G KP+
Sbjct: 158 GDGRTGEDVTPNIRTLAAVPGRLRGGSVPELLEVRGEVFFPTAAFTELNATLVAAGDKPF 217

Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+ +P     R L+  +HGLG         Q +  Q+M  LG PV+   
Sbjct: 218 ANPRNAAAGSLRQKDPRVTAGRPLSMIMHGLGAHRGFDVTSQSDAYQRMAELGLPVSRHH 277

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
               +   + ++       R  + ++IDG+V KVD F LQ++LG  ++SPRW +++K+  
Sbjct: 278 EVLASVAEVEAFVRRWGEHRHDVEHEIDGVVVKVDAFGLQRRLGATSKSPRWAVAYKYPP 337

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           ++ +TRLL I++ +GRTG +TP  RLEPV + G+ +  ATLHN D         +V R G
Sbjct: 338 EEVTTRLLGIEVNVGRTGRVTPFGRLEPVRVAGSTVALATLHNAD---------QVERKG 388

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
             + +GD V++++AG+VIP++V  +V+ R    + F  P+ CP C + +VR   P+    
Sbjct: 389 --VLIGDTVVLRKAGDVIPEIVGPVVDLRDGSERAFVMPTHCPECGTELVR---PEGEVD 443

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           V   RC   ++C AQ  E L HF SR A +I+G G +      +    A  +R   D+F 
Sbjct: 444 V---RCPNTVSCPAQLRESLFHFASRGALDIDGFGYETATALLE----AGRVRDVGDVFH 496

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L      +      + GF    +  +   +   R   L R +  L IRHVG   AR+LA+
Sbjct: 497 L------TAESFAELRGFAKKKIDQILRGVEAARQQPLWRLLVGLSIRHVGPSAARALAR 550

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
              S       ++ I A + +   +L  V  VG  IA ++V+++ +PR+   +E +    
Sbjct: 551 EMRS-------VDAIAAASTE---TLAAVDGVGPTIAASVVDWFADPRHQDILERIRSGG 600

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +        +    +    +V TGTL    R  A E V   G  V+A +S+KT  ++VG 
Sbjct: 601 ARFADAGADDGPGPLTGVTVVITGTLAGWSRDSATEAVQARGGKVTASVSKKTAFVVVGA 660

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +PG SK +KA+   + I++E  F  LL+Q
Sbjct: 661 DPGASKYDKARAWKLSILDEAGFAVLLEQ 689


>gi|13235515|emb|CAC33719.1| DNA ligase [Rickettsia rickettsii]
          Length = 488

 Score =  356 bits (914), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 197/508 (38%), Positives = 312/508 (61%), Gaps = 23/508 (4%)

Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+ +    R L +FV+  G T +  A  Q ++L K++  GF +N  
Sbjct: 1   FANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNLASSQDQLLTKLKECGFNINEI 60

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            + A++   I ++Y  +K+ R  LPY+IDG+VYK+++F+LQ ++G  AR+PR+  +HKF 
Sbjct: 61  SKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARNPRFATAHKFP 120

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
                T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ ATLHN   I            
Sbjct: 121 AIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEI-----------A 169

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +D+R+ D V ++RAG+VIPK++ +  ++R  D + F  P FC  C S++     P+   
Sbjct: 170 RKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTETFDTPLFCLSCNSKL--HYTPEDII 227

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           +    RC  GL C AQ  ER++HFVS++A +IEGLG++Q++F     D    I  P DIF
Sbjct: 228 I----RCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLI---DKGL-ISNPLDIF 279

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+ +  +S  K+EN+ G+G  SV NL+ +I K +N+SL RFI++LGIRH+G + A+ LA
Sbjct: 280 FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLA 339

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + + SY NF  ++  +  +  D +  L  +  +GD I   I++F+    NI  ++  L E
Sbjct: 340 REFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKK-LGE 398

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           +       E    S + +K +VFTG+L  I R +A+    +LGA V+  +S  TD+++ G
Sbjct: 399 ILNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAKATAEKLGAKVAVGVSSNTDLVVAG 458

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + GSKL+KA++L +KI++EE++L L++
Sbjct: 459 VDAGSKLKKAKELNIKIIDEEEWLTLIK 486


>gi|327489925|gb|EGF21714.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1058]
          Length = 652

 Score =  356 bits (914), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 230/698 (32%), Positives = 367/698 (52%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  R+     +K+     +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRV-----RKEFPQASYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQADSQE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            +L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++L
Sbjct: 229 AVLNKLADLDFSVNPTHILADSIEAVWKFIEKIAQERDSLPYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +P   PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNINGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S E  +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAECLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSLGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LG
Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A VS  +S+KTD+++ G++ GSKL KAQ+LG++I +E+
Sbjct: 610 ANVSGSVSKKTDLVVAGEDAGSKLAKAQELGIEIRDED 647


>gi|313673736|ref|YP_004051847.1| DNA ligase, nad-dependent [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940492|gb|ADR19684.1| DNA ligase, NAD-dependent [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 655

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 230/700 (32%), Positives = 387/700 (55%), Gaps = 69/700 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + +   L +E+++H   YY  + P I D++YD L ++   I    P+      P+ P  
Sbjct: 4   TKTDYDRLVKELNHHCIRYYLLNDPAISDAKYDNLYKQLRKIEEEHPEWI---SPDSPTQ 60

Query: 77  KIGGEMNLSLFKVT------HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           ++G       FKVT      H     SL+ I++  +L  F +++Y+       + I + +
Sbjct: 61  RVG-------FKVTSGKTIKHLYKMFSLDNIYSEGELNDFFSKVYKVVG----SDIDYVV 109

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPKIDG  ++I YE G   YAA RGDG  GED++  I+ I  +P  +S++    I +RGE
Sbjct: 110 EPKIDGAAVSIVYEDGVLSYAASRGDGVEGEDITHNIKTIRELP--VSISEKNRIVLRGE 167

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249
           VY+SK  F  +N E    G   +ANPRNAA+G L+ L+P    R  L+ F++ + +    
Sbjct: 168 VYLSKEQFNKINRERKNAGESLFANPRNAAAGTLKILDPAITARRGLSIFIYSIEEGRRY 227

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                ++ L+ ++ +GFP+N  +     +  I  Y ++++S+R  LPYDIDG V KV+++
Sbjct: 228 --DNHFDDLKWLKSIGFPINEHIF-VGKYKDIKGYIDKIESLRKNLPYDIDGAVVKVNKY 284

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            ++  LGE  + P+W I++K+  +Q +T L D+  Q+GRTGI+TPVA L+ VNI G+ ++
Sbjct: 285 EVRSILGETIKYPKWAIAYKYEAEQVTTILKDVIFQVGRTGIVTPVAVLDTVNISGSNVS 344

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED IK L            +++GD V V+++GE+IPKV+ ++   R    +   
Sbjct: 345 RASLHNEDEIKRL-----------GVKIGDTVFVEKSGEIIPKVIKVVPEFRTGGEKEII 393

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FPS CP C  ++         K+ A  +C   L C  +    + H+ SRDA +I GLG++
Sbjct: 394 FPSNCPSCGDKLF--------KIDAYWKCL-NLDCPDRVKGSITHYASRDAMDIRGLGEK 444

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++ F+   D      IP DI+ L+         + N+ GFG++S  NL  SI + +   
Sbjct: 445 NVERFY---DLGLLRSIP-DIYRLE------YDDLVNLEGFGELSADNLLKSIEESKRRE 494

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R I++LGI  VG ++A++LA ++ S       I++I+A + DD   L+ +  +GD + 
Sbjct: 495 FYRLIYALGIDGVGIKMAQTLALHFKS-------IDSIMAASIDD---LMDIYGIGDEVG 544

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++I EF++  RNI  ++  L+ V  ++ + E  +  ++     + TGTL K ++      
Sbjct: 545 RSIFEFFRERRNIEMLQ-FLRRVGVNMVQKEV-MGDKLSGVTFLITGTLSKPRKFYEDII 602

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +   G ++S + S+  + +IVG+NPGSKLEKA+ LGV+++
Sbjct: 603 IKNGGKILSGV-SKNLNFLIVGENPGSKLEKAKSLGVEVI 641


>gi|239917127|ref|YP_002956685.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
 gi|239838334|gb|ACS30131.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
          Length = 797

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 245/789 (31%), Positives = 373/789 (47%), Gaps = 101/789 (12%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E   L + +      YYQ   P I D+EYDAL RR + +    P+L  ++ P     +
Sbjct: 22  REEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELVSNDSPT---QE 78

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDG 136
           +GGE++ +   V H     SLE ++++E+L  +  R  +   Q +   +  + +E KIDG
Sbjct: 79  VGGEVSEAFAPVRHGARMYSLEDVFSVEELEVWFRRAAQALTQVRPGVAPRWLVEVKIDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISK 195
             + +RY  G+ V AA RGDG +GEDV+A +R I  IP  LS    P   EVRGEV++S 
Sbjct: 139 LAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAEFEVRGEVFMSS 198

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G+ P+ANPRNAA+G LR+ +P     R L  FVHG+G       + Q
Sbjct: 199 AAFAELNARRAEEGQPPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGIGSVEAFGLESQ 258

Query: 255 YEMLQKMRCLGFPVNNGVRQAN-----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           +E    +   G PV+   R+           +V+   E    R  L ++IDG+V K D F
Sbjct: 259 HEAYDALASWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHEIDGIVLKADAF 318

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ LG  +R PRW  ++K+  ++  T L DI + +GRTG +TP A LEPV + G+ ++
Sbjct: 319 ADQRYLGHTSRVPRWAAAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVLEPVTVAGSTVS 378

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP------ 423
            ATLHN+D +K            + + +GD V+V++AG+VIP+VV  ++  R        
Sbjct: 379 LATLHNQDVVK-----------AKGVLIGDTVVVRKAGDVIPEVVGPVLPLREKAIEAGR 427

Query: 424 DAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           + + F  P+ CP C +     L P K G +    RC    +C AQ   R++H  SR AF+
Sbjct: 428 ELREFVMPAHCPSCGT----PLAPAKEGDV--DLRCPNARSCPAQLAGRVEHLASRGAFD 481

Query: 483 IEGLGKQQLDFFFK--SEDPA-----------FSIRIPADIFTLQR---------RQQTS 520
           +E LG++   +  +   EDPA             I   A IF L           R +  
Sbjct: 482 VEALGEEAARWLVQGPGEDPAEHEGHVRPEGPGPITAEAQIFDLASGTPEAITGPRGEDG 541

Query: 521 TTKIENILGFGDV--------------------------------------SVTNLYDSI 542
            T ++  LG   V                                      +   L+D +
Sbjct: 542 LTDLQRSLGAVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPTANTLRLFDEL 601

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K ++  L R + +L IRHVG   ARSLA  + S            A    D   L  + 
Sbjct: 602 EKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALR------AAAEAGDRDRLAEID 655

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG IIA A++E++    +   V+             +++    +E   +V TG+L+   
Sbjct: 656 GVGPIIADALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPRTLEGLTVVVTGSLEGFS 715

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R  A+E +   G   S  +S+KTD ++ G+  GSKL+KAQ LGV +++E +F  LL    
Sbjct: 716 RDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEAEFTALLAGGP 775

Query: 723 TTLRIHDDD 731
             +R  D D
Sbjct: 776 DAVRPADTD 784


>gi|322385709|ref|ZP_08059353.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100]
 gi|321270447|gb|EFX53363.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100]
          Length = 652

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 229/699 (32%), Positives = 377/699 (53%), Gaps = 57/699 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  RI     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELMAFDQRI-----RKEFPQVSYICELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQAGSQE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L K+  L F VN     A++  G+  +  ++   R +L Y+IDG+V KV++ ++Q++L
Sbjct: 229 EVLNKLASLDFSVNPIHFLADSIDGVWEFIEKIAQERDSLSYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EALEIPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKVF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   ++  A I+ L      S   +  + GF + S   LY++I   +  S E+ +F
Sbjct: 450 DKN----LVKDVAGIYRL------SVEDLLTLDGFKEKSANKLYNAIQASKENSAEKLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRHVG++ +R L + +      +Q     I+           +  +G +IAQ++  +
Sbjct: 500 GLGIRHVGSKASRILMEKFHDMIKLSQASQEEISS----------IDSLGTVIAQSLHSY 549

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++   +   +   L+E   ++    + V+++  +  K +V TG LQK+ R++A+E +  L
Sbjct: 550 FEQEGSQLLLRE-LQEAGVNLDYLGEKVAADAALAGKTVVLTGKLQKLTRNQAKEKLLSL 608

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           GA V+  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 609 GANVAGSVSKKTDLVVAGTDAGSKLTKAQELGIEIRDED 647


>gi|170079241|ref|YP_001735879.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002]
 gi|254781436|sp|B1XLV0|DNLJ_SYNP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169886910|gb|ACB00624.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002]
          Length = 678

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 230/698 (32%), Positives = 361/698 (51%), Gaps = 53/698 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           L+ L  ++      YY    P + D+ YD L R   A+  A P L     P+ P  +IG 
Sbjct: 9   LAQLRSQLQKAAYAYYVLDAPFMEDAVYDQLYRELVALETAHPQLI---TPDSPTQRIGD 65

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +       V H+IP  SLE  ++  +L ++  R  R    +  +   +  E KIDG+ I 
Sbjct: 66  QPATQFTSVKHNIPLYSLENAFDFGELTQWEQRWQRALAGEIPSDSGYVCELKIDGSAIA 125

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFL 199
           + YE G  V  A RGDG +GE+++  +R I TIP  L+L N P ++EVRGE ++    F 
Sbjct: 126 LTYENGILVRGATRGDGVTGEEITQNLRTIRTIPLRLNLDNPPPLVEVRGEAFLPLETFE 185

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG---KTSEIFAKGQY 255
            +N E    G   +ANPRNAA+G LR+L+   +  R L+FF + L      +      Q+
Sbjct: 186 KINQEREKAGENLFANPRNAAAGTLRQLDSRIVAARKLDFFAYTLHLPESHNSPQLNSQW 245

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ ++ +GF VN           + +Y+ +    R  LPY  DG+V K+++FSLQ +L
Sbjct: 246 EALEFLKKMGFRVNPNRELCPNLTAVKNYFEKWDEGRKKLPYLTDGVVVKLNDFSLQAEL 305

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   + PRW I+ K+A ++A T + DI + +GRTG +TP+A +EPV + G  +  ATLHN
Sbjct: 306 GFTQKFPRWAIALKYAAEEAPTTVKDIIVNVGRTGAVTPMAVMEPVQLAGTTVQRATLHN 365

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED IK L           D+R+GD V++++AGE+IP+V+ ++V+ R     P+ FPS CP
Sbjct: 366 EDRIKEL-----------DLRIGDTVVIRKAGEIIPEVLRVLVDLRPEATIPYEFPSHCP 414

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S +VR      G+ VA  RC    +C A     L H+  RDA +I+GLG++ +    
Sbjct: 415 ECNSALVR----PPGEAVA--RCVNS-SCPAILRGSLVHWAGRDALDIQGLGEKNVILLI 467

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       ++  ADI+ L   Q  S  ++      G  S  NL  +I   +N    R ++
Sbjct: 468 EHG----LVQSIADIYDLTSEQLQSLPRM------GQKSAANLIQAIAHSKNQDYARVLY 517

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR VG   A  LA+ + + +   +            +  L  V  +G+ IAQ++V++
Sbjct: 518 GLGIRFVGKVNAEILAQNFPTLEQLQKA----------SFAQLQGVYGIGEEIAQSVVDW 567

Query: 616 YQNPRNICAVEALLKE-------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++   N   +E L +         +      +   + +I  K  V TGTL  ++R +A E
Sbjct: 568 FRVDANQQLIEKLQQAGLTFAQTQTAQTQTAQTQANHQISGKTFVITGTLPTLKRTEAAE 627

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
            +   G  V++ +S+ TD ++ GDN GSKL+KA+QLG+
Sbjct: 628 KIKAAGGKVTSSVSKNTDYLVAGDNAGSKLDKARQLGI 665


>gi|302524940|ref|ZP_07277282.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
 gi|302433835|gb|EFL05651.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
          Length = 707

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 228/709 (32%), Positives = 352/709 (49%), Gaps = 45/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+   +L +EI  H   YY    PII D ++DAL      I   +P L     P+ P   
Sbjct: 15  RERHGALAEEIRGHQFRYYVLDSPIISDGQFDALLGDLQKIEDEYPALVT---PDSPTQN 71

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG  +       H    LSL+ ++  E+   ++ R+     +K+  S  +  E KIDG 
Sbjct: 72  VGGTFSTEFTAHDHLERMLSLDNVFTAEEFLAWVERV-----EKEIGSAEYLAELKIDGL 126

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193
            I + YE GK      RGDG +GEDV+  IR +  +P  L+      +P+++EVRGEVY 
Sbjct: 127 AINLLYENGKLTRGLTRGDGRTGEDVTLNIRTLDQVPDRLTGTDEFPVPKLVEVRGEVYF 186

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFA 251
              DFL LN +M+  G+ PYANPRN A+G LR+ +P  ITR   L    HGLGK      
Sbjct: 187 RVEDFLELNAKMVEAGKLPYANPRNTAAGSLRQKDPK-ITRERRLRLICHGLGKRDGFEP 245

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q      +   G PV+   R   T   +  +       R    ++IDG+V KVD+ +L
Sbjct: 246 VTQSHAYDALAAWGLPVSPYTRVLRTGKELTEHIAYWGEHRHDAEHEIDGVVIKVDQVAL 305

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++A T LLDI + +GRTG +TP A  EPV + G+ +  A
Sbjct: 306 QRRLGTTSRAPRWAIAYKYPPEEAITMLLDIQVGVGRTGRVTPFAVTEPVKVAGSTVARA 365

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN++ +K         R G  + +GDR+++++AGEVIP+V+  +V+ R  D + F  P
Sbjct: 366 TLHNQEEVK---------RKG--VLIGDRIVIRKAGEVIPEVLGPVVDARTGDEREFVMP 414

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C +++      +  K +   RC     C AQ  ERL H   R AF+IE LG +  
Sbjct: 415 TECPECGTKLA--YQKEGDKDI---RCPNSQFCPAQLRERLFHLAGRGAFDIEVLGYEAA 469

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                    A  +    D+F L               G    +   L  +++  ++  L 
Sbjct: 470 VALLD----ARVVADEGDVFDLNEESLAEVELFRTKAGDLSANARKLLVNLDSAKDRPLW 525

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + I +L IRHVG   A++LA+ + S Q         +A           V  VG  IA A
Sbjct: 526 KVIVALSIRHVGPTAAQALAREFGSLQRIEDTTEEELAD----------VDGVGPTIAHA 575

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + E+++   +   VE   +         ++++   +E   +V TG+L    R +A+E + 
Sbjct: 576 VQEWFEVDWHREIVEKWRRAGVRMEEERDESIPRNLEGLSIVVTGSLDGFSRDEAKEAIM 635

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             G   +  +S+KT  ++VGD PGSK +KA QL V +++E  F  LL++
Sbjct: 636 ARGGKAAGSVSKKTSFVVVGDAPGSKYDKAVQLKVPVLDENGFRALLER 684


>gi|215405001|ref|ZP_03417182.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
 gi|289746820|ref|ZP_06506198.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
 gi|289687348|gb|EFD54836.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
          Length = 691

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 227/709 (32%), Positives = 365/709 (51%), Gaps = 49/709 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L     P+ P   +
Sbjct: 15  RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 71

Query: 79  GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG    + F+ V H    LSL+  +  ++L  +  RI+     +  ++  +  E KIDG 
Sbjct: 72  GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +PE++EVRGEV+ 
Sbjct: 128 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 187

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG        
Sbjct: 188 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 247

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             ++    +R  G PV+     A    G+   + Y+ E    R  + ++IDG+V KVDE 
Sbjct: 248 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ + 
Sbjct: 305 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVG 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   IK         R G  + +GD V++++AG+VIP+V+  +V  R    + F 
Sbjct: 365 QATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFI 413

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C+S +  +   K G   A  RC     C  Q  ER+ H  SR+  +IE LG +
Sbjct: 414 MPTTCPECRSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYE 468

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                 +++     I    ++F L  R    T       G    +   L  +++K +   
Sbjct: 469 AGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAP 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA  + S       ++ I A + D    L  V  VG  IA
Sbjct: 525 LWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTIA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            A+ E++    +   V+         +   +++V   +    +V TG+L    R  A+E 
Sbjct: 575 AAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEA 634

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL
Sbjct: 635 IVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 683


>gi|332884007|gb|EGK04287.1| DNA ligase [Dysgonomonas mossii DSM 22836]
          Length = 665

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 234/717 (32%), Positives = 377/717 (52%), Gaps = 63/717 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++Q + ++ +L +E++ H+  YY  S P I D E+D   +    +   +P+     DPN 
Sbjct: 1   MDQIKHQIDTLREELNKHNYDYYVLSAPTISDFEFDKKLKELTDLETQYPEYF---DPNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEP 132
           P  ++G ++N S  +V H  P LSL   +   ++  F  R+     KK  N  F    E 
Sbjct: 58  PSQRVGSDINKSFKQVPHKYPMLSLGNTYTEAEITDFYNRV-----KKGLNDDFDIVCEL 112

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K DGT I++ Y  G+   A  RGDG  G+DV+A +R I +IP R+     P   E+RGE+
Sbjct: 113 KYDGTSISLTYINGQLTQAVTRGDGVQGDDVTANVRTIRSIPLRLHGAGYPAEFEIRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
            +  + F  +N E        +ANPRNA SG L++ +P  + +R L+ +++ L    ++ 
Sbjct: 173 LMPWSVFDDINKERAEQEEALFANPRNAGSGTLKQQDPKIVASRKLDSYLYYL-LGEDLP 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             G YE L K +  GF +++  ++  T   I +Y +     R  LP   DG+V KV+  +
Sbjct: 232 TDGHYENLIKAKEWGFKISDATKKCKTLDEIFAYIHYWDKERKNLPVATDGIVLKVNSLT 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            QK LG  ++ PRW I+ KF  +QA T L  +  Q+GRTG +TPVA L PV + G  +  
Sbjct: 292 QQKNLGFTSKFPRWAIAFKFQAEQAVTTLESVSYQVGRTGAITPVANLRPVKLSGTTVKR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+L+NEDYI  L           D+ + D+V V++ GE+IPK+  + V +R+       F
Sbjct: 352 ASLYNEDYINSL-----------DLHINDQVYVEKGGEIIPKITGVDVAQRNIFDAKVEF 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP C + +V+D         A + C   ++C  Q   R++HF++R A NI G G + 
Sbjct: 401 IKDCPECGTPLVKDEGE------AIYYCPNDVSCPPQIKGRIEHFLTRKAMNIAG-GTET 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  +     A  IR  AD++TL+ +       +  +  + + S  NL DSI+   ++  
Sbjct: 454 VEHLYN----AGYIRNIADLYTLKWQD------VSRLERWAEKSAKNLIDSIHASVSVPY 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F+LGIR+VG  +A+ LA  +        +I+ + A   +D   L +V  +GD IAQ
Sbjct: 504 ERVLFALGIRYVGETVAKKLALAF-------PDIDLLQAATIED---LTQVDEIGDRIAQ 553

Query: 611 AIVEFYQNPRNICAVEALLK-----EVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +IV+++ NP N+  +  L       E+S SI   R EK     ++   +V +GT +K  R
Sbjct: 554 SIVKYFSNPNNLEVINKLRTFGLRFELSESIIAQRTEK-----LKGLSIVISGTFEKYSR 608

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            + +  + Q G   S  +S KT  ++ GDN G +KLEKA+ LG+ I+NE+ FL +L+
Sbjct: 609 DEYKSMIEQNGGKNSGSISSKTSYVLAGDNMGPAKLEKAKSLGIPIINEDDFLKMLE 665


>gi|227877013|ref|ZP_03995105.1| DNA ligase [Lactobacillus crispatus JV-V01]
 gi|256850560|ref|ZP_05555986.1| DNA ligase [Lactobacillus crispatus MV-1A-US]
 gi|227863384|gb|EEJ70811.1| DNA ligase [Lactobacillus crispatus JV-V01]
 gi|256712583|gb|EEU27578.1| DNA ligase [Lactobacillus crispatus MV-1A-US]
          Length = 668

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 221/710 (31%), Positives = 379/710 (53%), Gaps = 55/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++     P
Sbjct: 4   ITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG+++    KV H IP LS+  +++  +L+ F  R+    QK   + + + +E
Sbjct: 61  DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRM----QKLVGHPVEYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++      E  
Sbjct: 175 YMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEI 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++ +QKM  LGF  N   R+  T   + ++ +E  + R++L Y IDG+V K+D+  
Sbjct: 235 T-SQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLG 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +  
Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 354 ASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAYQI 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG + 
Sbjct: 403 PTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +++  +  S+
Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAQLDHFKEKSINNLLTALDNSKQNSV 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  I  LGI HVGA+ AR +          AQ+  N+    + D   +  +  +G  IA+
Sbjct: 506 ELLITGLGIDHVGAKAARLI----------AQKFKNLAKIMSLDVQEIASIDTIGMTIAE 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-----NKKLVFTGTLQKIQRHK 665
           ++  ++  P     ++  L+E   ++     +  +EIE     +K +V TG L+   R +
Sbjct: 556 SMTTYFAQPEAQKVIDE-LRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
             + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +
Sbjct: 615 FTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAI 664


>gi|187734527|ref|YP_001876639.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835]
 gi|254781249|sp|B2UL69|DNLJ_AKKM8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187424579|gb|ACD03858.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835]
          Length = 794

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 228/779 (29%), Positives = 381/779 (48%), Gaps = 104/779 (13%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + +  L  E+  H+  YY+ ++P I D+EYDAL    + +  A P+L+   DP+ P
Sbjct: 43  DPAHRRIDYLRSELRRHNRLYYEQAEPEISDAEYDALFLELEKLEKAHPELS---DPDSP 99

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNI-------EDLRKFITRIYRFWQKKDDNSIF 127
             ++GG       ++ H++P LS++ I+         E+L +F  ++ R  Q ++   + 
Sbjct: 100 TRRVGGAPLQGFNQIRHAVPMLSIDDIFEQRDAPVPDEELAEFYHKLSRALQTEN---VP 156

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            ++EPKIDG  ++I Y  GK  YAA RGDG  G+DV+A +R I ++P  L    P ++EV
Sbjct: 157 VSVEPKIDGVALSIMYRNGKLAYAATRGDGDVGDDVTANVRTIRSVPLTLPPGAPPVLEV 216

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV++    F  LN+E  A G   +ANPRNA +G L++L+P  +  R L F  HGLG  
Sbjct: 217 RGEVFMPNEAFAKLNEERDADGLPAFANPRNATAGTLKQLDPRQVAARPLAFLAHGLGAY 276

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                +   +    +R  G P N  V   ++         ++  +R TLPY  DG V K+
Sbjct: 277 EGPELRDAKDFWNMLRHCGIPCNEPVYYTDSLESTRQAVRDIDRLRHTLPYGTDGAVIKI 336

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
              + ++ LG  AR+PRW  ++KF  +Q  T LL+I +Q+GRTG+LTPVA L+PV + G+
Sbjct: 337 SSTATREALGATARAPRWAAAYKFPPEQKETTLLNIVVQVGRTGVLTPVAELQPVLLSGS 396

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN+D I             +D+R+GD VLV++AGE+IP V+ + +++R  DA+
Sbjct: 397 TVARATLHNQDEID-----------RKDVRIGDTVLVEKAGEIIPAVLKVNLSKRPQDAR 445

Query: 427 PFSF----PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P+S        CP C + ++++     GK+  A RCT    C AQ +  + HF SR A +
Sbjct: 446 PYSILEATKGLCPACGNPIMKE----EGKV--AWRCT-NFTCPAQAVTGITHFCSRSALD 498

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT--KIENILGFGDVSVTNLYD 540
           +E +G    +    S   + ++    D+F+L   Q  +      E    +G+ +     D
Sbjct: 499 VESIGSSVAEALRSSGLASSAL----DLFSLMPDQLANLNLGTPEEPRRYGEKNARKALD 554

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-----------QEINNIIA 589
           ++   R + LER++ + GI  VG  +A++LA  +   ++ A            E+    A
Sbjct: 555 ALQNARGLPLERWLIAFGIPLVGEVVAKALADTHPDLKHVADSPYLRDIVRLDELVEQAA 614

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQ-----------------------------NPR 620
             N +     +    G + A+A+ E +Q                             +  
Sbjct: 615 KTNPNTRENKKAVKEGALSAEAVQERHQELMEEIDRLTAPYLATGYLRKNTAKFSYGSEI 674

Query: 621 NICAVEALLKEVSPSIGRHEKNV---------------------SSEIENKKLVFTGTLQ 659
            + A ++L    + + G H  +V                     +  +  K  V TGTL 
Sbjct: 675 GVAAAKSLRSFFASAAGNHTMDVLHRLGINPQSQSYRASLLEIPAGSLSGKTFVITGTLS 734

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              R   ++ +   G   +  +S+ T  ++ G+  GSK +KA +LGV +++EE F  ++
Sbjct: 735 H-PRDYFEQLIASHGGKATGAISKSTSCLLAGNGGGSKRDKALKLGVPVISEEDFYKMI 792


>gi|76787534|ref|YP_329595.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae A909]
 gi|123771969|sp|Q3K1K8|DNLJ_STRA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76562591|gb|ABA45175.1| DNA ligase, NAD-dependent [Streptococcus agalactiae A909]
          Length = 652

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 238/713 (33%), Positives = 380/713 (53%), Gaps = 70/713 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E    EL SL   ++ +   YY    P + DS+YD L R    +    P+      PN 
Sbjct: 1   MENRMNELVSL---LNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNS 54

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P +++GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E K
Sbjct: 55  PTHRVGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRV-----KAEFPTAAYMAELK 109

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  +++ Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+
Sbjct: 110 IDGLSVSLTYVNGVLQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYL 167

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F A+N E  A G + +ANPRNAA+G LR+LN   +  R L  F++   + S    +
Sbjct: 168 PKESFEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKE 225

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q ++L+++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q
Sbjct: 226 TQDDVLKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQ 285

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ AT
Sbjct: 286 EELGFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRAT 345

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYI             +DIR+GD V+V +AG++IP V+++++++R+   +    P 
Sbjct: 346 LHNVDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPK 393

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +V       G++  A RC   L C  Q  ERL HF SRDA NI G G   ++
Sbjct: 394 LCPSCGSELVH----FEGEV--ALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVE 446

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNIS 549
             F     A  I   ADI+ L          IEN+L   G  + S T +Y +I   +  S
Sbjct: 447 KLFD----AHLIADVADIYRL---------SIENLLTLDGIKEKSATKIYHAIQSSKENS 493

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            E+ +F LGIRHVG++ +R L + + + +  +Q     IA           +  +G +IA
Sbjct: 494 AEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIA 543

Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRH 664
           +++  F++       V+ LL+E++    +     K VS++ +   L  V TG L+K+ R+
Sbjct: 544 KSLHTFFEKEE----VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRN 599

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +A+E +  LGA V+  +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 600 EAKEKLQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652


>gi|76788861|ref|YP_327947.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis A/HAR-13]
 gi|123731251|sp|Q3KMM3|DNLJ_CHLTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76167391|gb|AAX50399.1| NAD-dependent DNA ligase [Chlamydia trachomatis A/HAR-13]
          Length = 663

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 235/704 (33%), Positives = 382/704 (54%), Gaps = 53/704 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75
           +R +  +L  E+  HD CYY  ++P I D  YD   R    I    P+   S  P   L 
Sbjct: 5   SRDDYIALCTELVEHDRCYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           ++  G+  +    V HS P LS+  ++++++L +F +R     +K    S  ++LE KID
Sbjct: 65  DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S 
Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   ++   +  
Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +
Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDR 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+
Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS C
Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   
Sbjct: 404 PVCHEPVVKE--------KVSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+       I   +DIF L      +   ++ + GF D S+ NL  SI   + ++L+R +
Sbjct: 455 FE----VGLISSCSDIFAL------TEEDLKQVPGFKDRSIQNLLASIAGAKKVALDRLL 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +L I  VG+  A +LA ++++       ++ +I  + D+   L+ +  +G  +A +IV 
Sbjct: 505 TALSIPFVGSSGAIALADHFVT-------LDKVIEASLDE---LMSIEGIGPKVAASIVA 554

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+    N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  LG
Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLG 613

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             VS+ +S+ T  +I G   G KL+KAQ LG+ I NE + L +L
Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRIL 657


>gi|81749525|sp|Q8FPZ7|DNLJ_COREF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23493177|dbj|BAC18148.1| putative DNA ligase [Corynebacterium efficiens YS-314]
          Length = 938

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 229/711 (32%), Positives = 358/711 (50%), Gaps = 52/711 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q R+  + L +++ YH D YY   +P I D+++DAL R+   +    P+LA    P+ P 
Sbjct: 267 QLRRTWNELAEKVRYHRDLYYN-QQPEIPDADFDALFRQLQDLEEQHPELAV---PDSPT 322

Query: 76  NKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
            ++G  +    S   V H    LSL+ +++ E+LR ++ R           +  +  E K
Sbjct: 323 KEVGAPVTEQSSFDNVEHLERMLSLDNVFDEEELRDWLART---------PAKRYLTELK 373

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRG 189
           IDG  I + Y  G    AA RGDG  GED++A  R I  IP  L+      IP ++EVRG
Sbjct: 374 IDGLSIDLVYRNGMLERAATRGDGRVGEDITANARVIGDIPHELTATEEYPIPAVLEVRG 433

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EV+I   DF  +N + I  G KP+ANPRNAA+G LR+ NP D+  R L    HG+G +  
Sbjct: 434 EVFIPIEDFADVNAQRIEDGGKPFANPRNAAAGSLRQKNPEDVKKRRLRMITHGIGYSEG 493

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++    +   G P ++      T   +V         R    +++DGLV KVD+
Sbjct: 494 FQPASQHDAYLALAAWGLPTSSYTEAVETADAVVDKVLYWADHRHDALHEMDGLVIKVDD 553

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  +R+PRW I++K+  ++ +T+L+DI + +GRTG +TP A +EPV + G+ +
Sbjct: 554 IASQRALGSTSRAPRWAIAYKYPPEEVTTKLIDIKVSVGRTGRVTPFAMMEPVFVAGSTV 613

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+  +K         R G  + +GD V+V++AGEVIP+V+  +V  R    + F
Sbjct: 614 SMATLHNQSEVK---------RKG--VLIGDTVVVRKAGEVIPEVLGPVVELRDGTEREF 662

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C S +       T    A  RC    +C  Q  +RL +   R AF+IE LG+
Sbjct: 663 VFPEHCPECGSTLA-----PTRAEDADWRCPNTRSCPGQLSQRLTYIAGRGAFDIEALGE 717

Query: 489 QQLDFFFKSEDPAFSIRI-PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +      ++      I +  A +F L       +       G  + S   L  ++ +R+N
Sbjct: 718 KGAQDLIRN-----GILVDEAGLFDLTEEDLLESDVYTTKAGAVNASGRKLLANLEQRKN 772

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R + +L IRHVG   AR+LA  Y S Q       + +A  +           VG I
Sbjct: 773 TDLWRVLVALSIRHVGPTAARALAGRYRSMQKLVDAPVDELAETDG----------VGMI 822

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IAQ+  ++++   +   V+              + +   +E   +V TG L+   R   +
Sbjct: 823 IAQSFKDWFEVDWHRAIVDTWAAAGVTMEDAETEQLEQTLEGLTIVVTGGLEGFTRDSVK 882

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +   G   S  +S+KTD ++VG+N GSK  KA++LG+ I++EE F+ LL
Sbjct: 883 EAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLTILDEEAFVRLL 933


>gi|146321044|ref|YP_001200755.1| NAD-dependent DNA ligase LigA [Streptococcus suis 98HAH33]
 gi|253751920|ref|YP_003025061.1| DNA ligase [Streptococcus suis SC84]
 gi|253753743|ref|YP_003026884.1| DNA ligase [Streptococcus suis P1/7]
 gi|253755379|ref|YP_003028519.1| DNA ligase [Streptococcus suis BM407]
 gi|166216248|sp|A4W1W6|DNLJ_STRS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145691850|gb|ABP92355.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus suis 98HAH33]
 gi|251816209|emb|CAZ51836.1| DNA ligase [Streptococcus suis SC84]
 gi|251817843|emb|CAZ55596.1| DNA ligase [Streptococcus suis BM407]
 gi|251819989|emb|CAR46142.1| DNA ligase [Streptococcus suis P1/7]
 gi|292558495|gb|ADE31496.1| NAD-dependent DNA ligase [Streptococcus suis GZ1]
 gi|319758281|gb|ADV70223.1| NAD-dependent DNA ligase LigA [Streptococcus suis JS14]
          Length = 652

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 220/682 (32%), Positives = 367/682 (53%), Gaps = 59/682 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YYQ  +P + D+EYD L R    +  A P+L     P+ P +++GG+M     K +H  P
Sbjct: 19  YYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHRVGGKMLDGFEKYSHVYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YE G  V  A R
Sbjct: 76  LFSLQDAFSREELEAFDQRV-----RKEFPQATYICELKIDGLSISLTYEAGNLVVGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  +P    L +PE ++  VRGE Y+ K  F  +N +    G   
Sbjct: 131 GDGSVGENITENLKRVADVP----LTLPEAVDITVRGECYMPKASFDRVNKQRQEAGEAE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           + NPRNAA+G LR+L+   +  R L  F++     SE  A  Q ++L+K+  LGF  N+ 
Sbjct: 187 FVNPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSE--ATSQSQVLEKLDALGFVTNHE 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A +      +  ++   R  LPY+IDG+V KV++ ++Q++LG   ++PRW +++KF 
Sbjct: 245 YCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR+GD V+V +AG++IP V+  +V++   + +    PS CP CQS    DL     +
Sbjct: 354 EKDIRIGDTVIVYKAGDIIPAVLK-VVDKYRKEQEIMPIPSHCPSCQS----DLQHYEDE 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           +  A RC   + C +Q + +L+HF SRDA NI GLG   ++  F     A  +   ADI+
Sbjct: 409 V--ALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLFG----AGLVHDVADIY 461

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L      +   +  + GF + S   LY +I   ++ S E  +F LGIRHVG++ ++ L 
Sbjct: 462 KL------TVDDLLTLEGFKEKSANKLYQAIQTSKSNSAECLLFGLGIRHVGSKASKILV 515

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + +   +  A      IA           +  +G +IA+++  F+ +      + A LKE
Sbjct: 516 EKFGDLETLAFADQEAIAS----------LEGLGQVIAKSLTTFFAS-EGAQQLLAELKE 564

Query: 632 VSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
              ++    + V  ++ +    +V TG L++++R++A+  +  LGA V+  +S+KT++++
Sbjct: 565 AKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGANVAGSVSKKTNLVV 624

Query: 690 VGDNPGSKLEKAQQLGVKIMNE 711
            G + GSKL KAQ+LG++I +E
Sbjct: 625 AGTDAGSKLTKAQELGIEIKDE 646


>gi|237713195|ref|ZP_04543676.1| DNA ligase [Bacteroides sp. D1]
 gi|262406666|ref|ZP_06083215.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22]
 gi|294643460|ref|ZP_06721274.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a]
 gi|294808131|ref|ZP_06766900.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b]
 gi|229446662|gb|EEO52453.1| DNA ligase [Bacteroides sp. D1]
 gi|262355369|gb|EEZ04460.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22]
 gi|292641208|gb|EFF59412.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a]
 gi|294444674|gb|EFG13372.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b]
          Length = 666

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 234/713 (32%), Positives = 370/713 (51%), Gaps = 63/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P  +
Sbjct: 4   KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ +   
Sbjct: 117 SISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N + + +R L+ +++ L     +   G Y
Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK L
Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A T L  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTCLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429
            D I+GL           D+ +GD V V++ GE+IPK+  +       DA+ F       
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP C S++VR      G+  AAH C    AC  Q   +++HF+SR A NI+GLG +
Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F++       I   AD++ L      +   I+ +   G+ S  N+   I + + + 
Sbjct: 454 TVDMFYR----LGLIENTADLYKL------TVDDIKGLDRMGEKSAENIVTGIAQSKTVP 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IA
Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666
           Q+I+ ++ N  N   V   LKE    + R E+++S    ++  + +V +G      R + 
Sbjct: 554 QSILAYFANESNRELVNR-LKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEY 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +E + + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|22537014|ref|NP_687865.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae 2603V/R]
 gi|81454504|sp|Q8E084|DNLJ_STRA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|22533870|gb|AAM99737.1|AE014230_17 DNA ligase, NAD-dependent [Streptococcus agalactiae 2603V/R]
          Length = 652

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 238/713 (33%), Positives = 380/713 (53%), Gaps = 70/713 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E    EL SL   ++ +   YY    P + DS+YD L R    +    P+      PN 
Sbjct: 1   MENRMNELVSL---LNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNS 54

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P +++GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E K
Sbjct: 55  PTHRVGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRV-----KAEFPTAAYMAELK 109

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  +++ Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+
Sbjct: 110 IDGLSVSLTYVNGVLQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYL 167

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F A+N E  A G + +ANPRNAA+G LR+LN   +  R L  F++   + S    +
Sbjct: 168 PKESFEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKE 225

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q ++L+++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q
Sbjct: 226 TQDDVLKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSIAMQ 285

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ AT
Sbjct: 286 EELGFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRAT 345

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYI             +DIR+GD V+V +AG++IP V+++++++R+   +    P 
Sbjct: 346 LHNVDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPK 393

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +V       G++  A RC   L C  Q  ERL HF SRDA NI G G   ++
Sbjct: 394 LCPSCGSELVH----FEGEV--ALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVE 446

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNIS 549
             F     A  I   ADI+ L          IEN+L   G  + S T +Y +I   +  S
Sbjct: 447 KLFD----AHLIADVADIYRL---------SIENLLTLDGIKEKSATKIYHAIQSSKENS 493

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            E+ +F LGIRHVG++ +R L + + + +  +Q     IA           +  +G +IA
Sbjct: 494 AEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIA 543

Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRH 664
           +++  F++       V+ LL+E++    +     K VS++ +   L  V TG L+K+ R+
Sbjct: 544 KSLHTFFEKEE----VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRN 599

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +A+E +  LGA V+  +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 600 EAKEKLQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652


>gi|13235527|emb|CAC33654.1| DNA ligase [Rickettsia montanensis]
          Length = 488

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 197/508 (38%), Positives = 313/508 (61%), Gaps = 23/508 (4%)

Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+ +    R L +FV+  G T +  A  Q ++L K++  GF +N  
Sbjct: 1   FANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNLASSQDQLLTKLKECGFNINEI 60

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            + A++   I ++Y  +K+ R  LPY+IDG+VYK+++F+LQ ++G  ARSPR+  +HKF 
Sbjct: 61  SKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRFATAHKFP 120

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
                T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ ATLHN   I            
Sbjct: 121 AIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEI-----------A 169

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +D+R+ D V ++RAG+VIPK++ +  ++R  D   F  P FC  C S+    L+     
Sbjct: 170 RKDVRIKDYVFLQRAGDVIPKIMGVDFDKRPSDTATFDTPLFCLSCNSK----LHYMPED 225

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           ++   RC  GL C AQ  ER++HFVS++A +IEGLG++Q++F   +      I  P DIF
Sbjct: 226 III--RCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQIEFLIDNG----LISNPLDIF 279

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+ +  +S  K+EN+ G+G  SV NL+ +I K +N+SL RFI++LGIR +G + A+ LA
Sbjct: 280 FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRRIGEQNAKLLA 339

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           K + SY NF  ++  +  +  D +  L  +  +GD I   I++F+    NI  ++ L   
Sbjct: 340 KEFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGAI 399

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++    +  +  SS + +K +VFTG+L  I R +A+    +LGA V+A +S  TD+++ G
Sbjct: 400 LNIEDYKETREQSS-LTDKIVVFTGSLPTISRAEAKATAEKLGAKVAAGVSSNTDLVVAG 458

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + GSKL+KA++L +KI++EE++L L++
Sbjct: 459 VDAGSKLKKAKELNIKIIDEEEWLTLIK 486


>gi|76798177|ref|ZP_00780429.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21]
 gi|77405561|ref|ZP_00782652.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
 gi|77410701|ref|ZP_00787060.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111]
 gi|76586485|gb|EAO62991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21]
 gi|77163237|gb|EAO74189.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111]
 gi|77175868|gb|EAO78646.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
          Length = 648

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 233/692 (33%), Positives = 371/692 (53%), Gaps = 67/692 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DS+YD L R    +    P+      PN P +++GG +     K  H  P
Sbjct: 15  YYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNSPTHRVGGLVLEGFEKYQHEYP 71

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     K +  +  +  E KIDG  +++ Y  G     A R
Sbjct: 72  LYSLQDAFSKEELIAFDKRV-----KAEFPTAAYMAELKIDGLSVSLTYVNGVLQVGATR 126

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  F A+N E  A G + +A
Sbjct: 127 GDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEAINIEKRANGEQEFA 184

Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+LN   +  R L  F++   + S    + Q ++L+++   GF VN+   
Sbjct: 185 NPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKETQDDVLKELESYGFSVNHHRL 242

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
            +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG   ++PRW I++KF  +
Sbjct: 243 ISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIAYKFPAE 302

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DYI             +
Sbjct: 303 EKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEK 351

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR+GD V+V +AG++IP V+++++++R+   +    P  CP C S +V       G++ 
Sbjct: 352 DIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPKLCPSCGSELVH----FEGEV- 405

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
            A RC   L C  Q  ERL HF SRDA NI G G   ++  F     A  I   ADI+ L
Sbjct: 406 -ALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD----AHLIADVADIYRL 459

Query: 514 QRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
                     IEN+L   G  + S T +Y +I   +  S E+ +F LGIRHVG++ +R L
Sbjct: 460 S---------IENLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGLGIRHVGSKASRLL 510

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
            + + + +  +Q     IA           +  +G +IA+++  F++       V+ LL+
Sbjct: 511 LEEFGNLRQLSQASQESIA----------SIDGLGGVIAKSLHTFFEKEE----VDKLLE 556

Query: 631 EVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           E++    +     K VS++ +   L  V TG L+K+ R++A+E +  LGA V+  +S+KT
Sbjct: 557 ELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVTGSVSKKT 616

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           D+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 617 DLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 648


>gi|296171259|ref|ZP_06852663.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894227|gb|EFG73984.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 693

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 225/712 (31%), Positives = 362/712 (50%), Gaps = 49/712 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+    L  E+  H   YY    PI+ D+E+D +     A+   +P+L     P+ P 
Sbjct: 12  EVRRRWQELADEVREHQFRYYIKDAPIVSDAEFDTMFNDLLALEDRYPEL---RVPDSPT 68

Query: 76  NKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +GG    + F +  H    LSL+ +++ ++L  +  R+    + +     ++  E KI
Sbjct: 69  QLVGGAGFATDFTEAAHLERMLSLDDVFDRDELVAWNNRV----ENEVGRDPYYLCELKI 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEVRGE 190
           DG  +++ Y  G+   AA RGDG  GEDV+   R I  +P    R   L IP ++EVRGE
Sbjct: 125 DGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLTRAADLPIPAVLEVRGE 184

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V+    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HG+G+T   
Sbjct: 185 VFFMLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTDGF 244

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
                ++    ++  G PV     +      +   + Y+ E    R  + ++IDG+V KV
Sbjct: 245 APASLHDAYTALKAWGLPVAEQTARVRGLAAVEDRIGYWGEH---RYEIDHEIDGVVVKV 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+F+LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP A + PV + G+
Sbjct: 302 DDFALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGS 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN         + +V R G  + +GD V++++AG+VIP+V+  +V+ R    +
Sbjct: 362 TVGLATLHN---------AAEVKRKG--VLIGDTVMIRKAGDVIPEVLGPVVDLRDGSER 410

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P+ CP C + +      K G   A  RC    +C AQ  ER+ H   R A +IEGL
Sbjct: 411 EFVMPTTCPECGTTLA---PAKEGD--ADIRCPNARSCPAQLRERVFHVAGRGALDIEGL 465

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +      K    A  I    D+FTL       T       G    +   L D+++K +
Sbjct: 466 GYEAATALLK----AGVIADEGDLFTLTEDDLLRTDLFRTKAGTLSANGRRLLDNLDKAK 521

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            ++L R + +L IRHVG   AR+LA  + S       ++ I+A + +    L  V  VG 
Sbjct: 522 TVALWRVLVALSIRHVGPTAARALATEFGS-------LDAIMAASTE---RLAAVEGVGP 571

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            IA A+ E++    +   V+             + +V   +E   +V TG+L    R  A
Sbjct: 572 TIAAALTEWFTVDWHRAIVDKWRAAGVRMADERDASVPRTLEGLTVVVTGSLAGFSRDDA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +E +   G   +  +S+KTD ++ GD PGSK +KA +LGV +++E+ F  LL
Sbjct: 632 KEAIIARGGKAAGSVSKKTDYVVAGDAPGSKYDKAVKLGVPVLDEDGFRELL 683


>gi|110833810|ref|YP_692669.1| NAD-dependent DNA ligase LigA [Alcanivorax borkumensis SK2]
 gi|123345666|sp|Q0VR01|DNLJ_ALCBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110646921|emb|CAL16397.1| DNA ligase (NAD+) [Alcanivorax borkumensis SK2]
          Length = 777

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 227/635 (35%), Positives = 337/635 (53%), Gaps = 54/635 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF-KVTHSI 93
           YY    P + D+EYD + R    +   +PDL  ++ P   +    G++ L  F +V H +
Sbjct: 25  YYVQDDPAVPDAEYDRVFRALKDLEAQYPDLVTADSPTQRV----GDVPLDAFEQVQHEV 80

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITIRYEKGKFVYAA 152
           P LSL+  ++ E+L  F  RI    ++ D + I  +  EPK+DG  +++ YE G+ V AA
Sbjct: 81  PMLSLDNAFDDEELWAFDKRIR---ERLDVSEIIDYVAEPKLDGLAVSLLYENGELVRAA 137

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211
            RGDG +GE+++   R I ++P  L  N +P+ +EVRGEV +    F  LN      G K
Sbjct: 138 TRGDGQTGENITVNARTIRSVPLKLRGNDVPKRLEVRGEVVMPHAGFEELNARQQEAGLK 197

Query: 212 PYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVN 269
            +ANPRNAA+G LR+L+     +R L F+ + + +            ML  +R  G  VN
Sbjct: 198 LFANPRNAAAGSLRQLDSRITASRPLEFYAYSMAQLEGWEHPPTHSAMLDALRDWGLRVN 257

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
             +R  +    ++ +Y  +   R  L YDIDG+VYKV+ F  Q  LG  +R+PRW I+HK
Sbjct: 258 PEIRVCHGVEALLRFYQGILEKREHLDYDIDGVVYKVNRFDWQDDLGFVSRAPRWAIAHK 317

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           F  ++  T L  +D Q+GRTG LTPVARLEPV++GG +++NATLHN D I+ L       
Sbjct: 318 FPAQEELTVLNGVDWQVGRTGALTPVARLEPVHVGGVIVSNATLHNIDEIQRL------- 370

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
               DIR+GD V+V RAG+VIPKVV  +   R  +AQ  + PS CP+C S ++R      
Sbjct: 371 ----DIRIGDTVVVYRAGDVIPKVVRALPERRPANAQGIALPSSCPVCGSEILR------ 420

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
           G      RCTGGL C  Q+ E +KHF SR A +I+GLG + +D     E     I   AD
Sbjct: 421 GHDQVVARCTGGLICGDQRREAIKHFASRRAMDIDGLGDKLVDALVDQE----LITTVAD 476

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
           ++ L+  Q     ++      G+ S  NL  ++   + + L RF+F+LGI  +G E A++
Sbjct: 477 LYRLKAEQVAGLERM------GEKSADNLIAALEASKTVGLGRFLFALGILQIGEETAKN 530

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           LA  +           ++ +  +   L L+ VP VG  +A+AI  F+    N   ++ LL
Sbjct: 531 LADCF----------GDLDSIRHAPLLLLLAVPDVGLEVAKAIGAFFAESDNEAVIDGLL 580

Query: 630 KE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            + VSP        V S    K L     L+  +R
Sbjct: 581 AQGVSP----QASGVPSAAFVKSLTLAQLLKSAKR 611



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 60/94 (63%), Gaps = 1/94 (1%)

Query: 630 KEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           K+V+    R  + + S+ +E +  V TGTL++  R++A++ + QLGA V+  +S+ T ++
Sbjct: 678 KKVADMAARAPQEMESQPLEGQTWVLTGTLEQFTRNQAKQALQQLGAKVAGSVSKNTRMV 737

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + G + GSKL KA+ LG+++ +E   L LL Q+ 
Sbjct: 738 VAGASAGSKLAKAESLGIEVCDEAALLSLLNQHG 771


>gi|332665881|ref|YP_004448669.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334695|gb|AEE51796.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100]
          Length = 711

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 241/733 (32%), Positives = 388/733 (52%), Gaps = 67/733 (9%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + A +  Q   EL  L   I YH+  YY  + P++ D EYD L +  + +    P+L  +
Sbjct: 24  VHAQTPAQQHAELCGL---IIYHEWRYYIQNDPVLSDYEYDQLFKLLERLEEVHPELVSA 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+    ++  ++     +V H IP LSL   +N EDL  +   I RF     D  + +
Sbjct: 81  DSPS---QRVSADLTEDFSQVEHLIPMLSLANSYNAEDLNDWDASIKRFLNIDPDTDLDY 137

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IE 186
            +EPK DG  I + YE    V AA RG+G  GE+++   + I +IP     +   I  +E
Sbjct: 138 GVEPKFDGGSIALVYENDVLVRAATRGNGIIGEEITNNAKVIRSIPLRAEFSKYGIHRVE 197

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           +RGEV I K+ F  +N +  A G   +AN RN A+G LR  +P ++  R L  F++ LG 
Sbjct: 198 LRGEVLIRKDIFEKMNAKRAAEGITLFANARNTATGGLRIKDPKEVAKRGLEAFIYTLGY 257

Query: 246 TSEIFAKGQYEMLQKMRC----------LGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRST 294
            ++   +    ML +             LGF V    R+       ++ + N  +  R  
Sbjct: 258 ATD---QAGNNMLNQFATHLESLELLEKLGFKVPVQERKLCKNIQEVIDFCNYWQQQRDG 314

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
             Y+IDG+V KV+   LQ++ G  +  PRW I+ KF  KQA+++LL+++ Q+G+ G +TP
Sbjct: 315 YAYEIDGMVAKVNSRELQERSGFTSHHPRWAIAFKFQAKQATSKLLNVEYQVGKIGSITP 374

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA+LEPV + G  +++ +LHNED+I             RD+R+GD VLV+RAG+VIP +V
Sbjct: 375 VAKLEPVQLAGVTVSSVSLHNEDFIT-----------SRDLRLGDTVLVERAGDVIPYIV 423

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R     P  FP FCPI  +    +L  +  +  AA RC   + C  Q L+R+  
Sbjct: 424 KAMDELRDGSEVPIVFPQFCPINDTDTPVELLREGEE--AAWRCPNCV-CGQQDLQRIIF 480

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            VS+DA +I+G+GKQ ++ FF+       +R  AD++ L        T++  + GFG+ S
Sbjct: 481 HVSKDAMDIDGMGKQIVERFFE----LGWVRNFADVYNL------DFTQVAQLEGFGEKS 530

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
            T L  +I K +   + R ++SL I H+G ++++ LA           EIN+++  +  D
Sbjct: 531 ATKLQAAIEKAKKNPISRVLYSLSIHHLGKKVSKLLAA----------EINHVL--DLKD 578

Query: 595 WL--SLIRVPLVGDIIAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSE--I 647
           W      ++  VG ++A   +EF+QN  NI  +   EAL   +  +     K  S++  +
Sbjct: 579 WQIEDYTKIKDVGPVVAANAIEFFQNELNIELIQQMEALGVNLHQTEEDKPKAASADAPL 638

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-V 706
             K ++FTG+L K+ R +AQE     GA   + +S+  DI++VG+  GSKL+KA++LG V
Sbjct: 639 AGKTILFTGSLAKMGRKEAQEKAEAAGAKNISAVSKNLDILVVGEEAGSKLKKARELGTV 698

Query: 707 KIMNEEQFLFLLQ 719
            I+ E++FL +L+
Sbjct: 699 MILTEDEFLAMLE 711


>gi|326797492|ref|YP_004315311.1| DNA ligase [Sphingobacterium sp. 21]
 gi|326548256|gb|ADZ76641.1| DNA ligase [Sphingobacterium sp. 21]
          Length = 672

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 216/709 (30%), Positives = 388/709 (54%), Gaps = 48/709 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   + +L +E++ H+  YY  ++P I D ++D       A+   +P+     DP+ P  
Sbjct: 6   ALSRIEALTKELNDHNYKYYVLAQPSISDFDFDQKLAELAALEKDYPEFL---DPDSPTQ 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+GG++      V H  P LSL   ++ ++L+ F  RI    +K   +   +  E K DG
Sbjct: 63  KVGGDITKQFKTVRHKWPMLSLSNTYSEKELKDFDERI----RKVLGDDFEYVCELKFDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             I++ YE+G       RGDG  G++V++ I+ I ++P ++ S + P++ E+RGEV++ +
Sbjct: 119 LSISLTYEQGVLTRGVTRGDGTQGDEVTSNIKTIKSVPNKIKSGHFPDLFEIRGEVFMHR 178

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-GKTSEIFAKG 253
             F  LN E +     PYANPRN A+G ++  + +++  R L+ F++ L     +   K 
Sbjct: 179 AAFERLNKERLENDEIPYANPRNFAAGTIKLQDSSEVAKRPLDCFLYFLYMDNRDRLFKT 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E L+ ++  GF V+   +   T   ++ + +     R  L YDIDG+V KV+ ++ Q 
Sbjct: 239 HWESLEAVKSWGFHVSEHTKLCRTIDEVLQFISYWDDARHKLSYDIDGIVIKVNSYAQQH 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++K+  ++  T L  +  Q+GRTG +TPVA LEPV + G  +  ATL
Sbjct: 299 ELGFTAKSPRWAIAYKYKAEEVETILKSVSYQVGRTGAVTPVANLEPVQLSGTTVKRATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN + I  L           D+   D V+V++ GE+IPK++ +  ++R PD +  ++P+ 
Sbjct: 359 HNANEITRL-----------DLHELDTVMVEKGGEIIPKIIGVNKDKRVPDTKQIAYPTH 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C + ++R    K G+  A H C   L C  Q + +++HF+SR A +IEG+G + ++ 
Sbjct: 408 CPVCNTVLIR----KEGE--AVHYCPNELGCPPQIVGKIQHFISRKAMDIEGMGNETVEV 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            +K       ++  +D++ L   ++    ++E I  FG+ S+ N+   I K +    ++ 
Sbjct: 462 LYKKG----LLKQISDLYQLHHHKE----ELEQIERFGEKSINNMLLGIQKSKERPFQKV 513

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR+VG  IA+ LA    S++N    I+N+I  + ++   +  V  +G+ IAQ++ 
Sbjct: 514 LFGLGIRYVGETIAKKLAN---SFKN----IDNLIQASVEE---IAAVDEIGERIAQSVK 563

Query: 614 EFYQNPRNICAVEALLKE-VSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           E++ N  ++  VE L  E +  +I   E  + S+++ +K  V +G  +   R    + + 
Sbjct: 564 EYFSNTLHLHQVEILKGENLQFAIIEEEFQLNSNKLADKSFVISGVFEHYSREDLGKIIV 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           Q G  + + +S K + ++ GDN G SKL KAQ+  + I++E + + ++Q
Sbjct: 624 QNGGKLLSGISAKLNYLVAGDNMGPSKLAKAQKFNIPIISEVELIKMIQ 672


>gi|296876694|ref|ZP_06900742.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           15912]
 gi|296432196|gb|EFH17995.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           15912]
          Length = 652

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 230/699 (32%), Positives = 364/699 (52%), Gaps = 64/699 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL  L    +Y    YY    P + DSEYD L R    +  A PD      P  P +++
Sbjct: 6   KELVELLNRYAYE---YYTKDTPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+     +K+ +SI +  E KIDG  
Sbjct: 60  GGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRV-----RKEFSSISYVCELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G  V  A RGDG  GED++  ++ +  IP VL    P  I VRGE Y+ +  F
Sbjct: 115 ISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPE--PVNITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+ T I    N       + S      Q  +L
Sbjct: 173 DRVNQIRQENGEPEFANPRNAAAGTLRQLD-TKIVAKRNLATFLYQEVSPTDQSSQEGVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +K+  LGF VN     A     I  +  ++  +R  LPYDIDG+V KV++ ++Q++LG  
Sbjct: 232 EKLARLGFVVNQERVLAEDMEQIWEFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   ++L +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DI   D V+V +AG++IP V+ ++ ++R  D Q  + P+ CP CQ
Sbjct: 352 I-----------AEKDIHQDDTVIVYKAGDIIPAVLRVVKDKRVSD-QALAIPTQCPSCQ 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS- 497
           S ++   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F + 
Sbjct: 400 SELLHFEDE------VALRCINPL-CPAQMKEGLNHFASRDAMNITGLGPAVVEKLFAAQ 452

Query: 498 --EDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             ED A   R+   D+ TL+              GF + S   LY++I   +  S E+ +
Sbjct: 453 LVEDVAGIYRLTVEDLLTLE--------------GFKEKSAEKLYEAIQASKENSAEKLL 498

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRHVG++++          Q   QE ++I      D   +  +  +G ++A+++  
Sbjct: 499 FGLGIRHVGSKVS----------QILLQEFHDIDQLATADPERIASIDSLGMVVAESLKS 548

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++    +   ++  LKE S ++    + V+++  +    +V TG L+++ R +A+  +  
Sbjct: 549 YFAQEGSKRLLQE-LKEASVNMVYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLES 607

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           LGA V+  +S+KTD+++ G + GSKL KAQ+LG+++ +E
Sbjct: 608 LGAKVTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDE 646


>gi|311113170|ref|YP_003984392.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931]
 gi|310944664|gb|ADP40958.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931]
          Length = 740

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 239/733 (32%), Positives = 383/733 (52%), Gaps = 65/733 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E + L   I      YYQ   P + D+EYD L RR + I   +P L  ++ P     +
Sbjct: 30  RAEYAELTDTIRTARHDYYQEDAPTLSDAEYDRLYRRLEQIEAQYPALIANDSPT---QE 86

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE++ +   VTH +   SLE ++++E+LR ++T+     +     +  +  E KIDG 
Sbjct: 87  VGGEVSEAFSPVTHLVRMYSLEDVFSLEELRAWLTKAEENTRLLTGTAPQWLTELKIDGL 146

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKN 196
            + + Y  G  V AA RGDG +GEDV+  +R I +IP+ L+  N P  +EVRGEV+IS  
Sbjct: 147 AVNLLYRNGVLVRAATRGDGTTGEDVTHNVRTIASIPQKLAGENHPAELEVRGEVFISSA 206

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           DF  LN++M++ G+ P+ANPRNAA+G LR+ +      R L+ +VHG+G  + +    QY
Sbjct: 207 DFKKLNEKMVSEGKNPFANPRNAAAGSLRQKDSAVTAERPLSMYVHGVGSRTGLDVNSQY 266

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           +  +++   G P +   +   +   I+ Y  E    R +L ++IDG+V KV++F  Q QL
Sbjct: 267 QTYEQLAAWGLPTSPYSKLFTSVDDILRYIAEYGEKRHSLVHEIDGIVIKVNDFVAQTQL 326

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R PRW +++K+  ++ +T+LLDI + +GRTG +TP   +EPV + G+ +  ATLHN
Sbjct: 327 GYTSRVPRWAVAYKYPPEEVNTKLLDIRVDVGRTGRVTPYGVMEPVLVSGSTVERATLHN 386

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           +D +K            + + +GD V++++AG+VIP++V  +V  R+   + F  P+ CP
Sbjct: 387 QDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVALRNGHEREFVMPTECP 435

Query: 436 ICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
            C +     L P K G +    RC    +C AQ  ER+ +  SR AF+IE LG +     
Sbjct: 436 SCGTT----LAPGKEGDV--DMRCPNYRSCPAQLTERIYYAASRGAFDIEALGFEAAKAL 489

Query: 495 FKSEDP--------AFSIRIPA-DIFTLQRRQQ-----TSTTKIENILGF---------- 530
               +P        AF   + A D+  ++ R++       T K E +  F          
Sbjct: 490 TAPAEPEQPPLTSEAFLFDLTAEDLRDVKIRREKKVKGVGTGKFELVPYFYTKPTKAKPD 549

Query: 531 --GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
                +  NL+  + K ++  L R + +L IRHVG   AR+LA  + S    AQ      
Sbjct: 550 PVPTKNTQNLFVELEKAKSQPLWRVLVALSIRHVGPTAARALATEFGSMDAIAQA----- 604

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSE- 646
                D   L  V  VG +IA +I+E++    +    E L +     +    E++ S E 
Sbjct: 605 -----DRDRLAAVDGVGGVIADSIIEWFATDWH---REVLARWADAGVRMEDERDASIER 656

Query: 647 -IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +E   +V TGTL    R  A+E +   G   S  +S+KT  ++ G + GSKL+KA+ LG
Sbjct: 657 TLEGVTVVVTGTLVNYSRDSAKEAIIVRGGRASGSVSKKTHFVVAGASAGSKLDKAEALG 716

Query: 706 VKIMNEEQFLFLL 718
           + +++E+ F  LL
Sbjct: 717 IPVLDEDGFTKLL 729


>gi|119961355|ref|YP_947208.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1]
 gi|166215391|sp|A1R4P6|DNLJ_ARTAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119948214|gb|ABM07125.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1]
          Length = 768

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 224/736 (30%), Positives = 369/736 (50%), Gaps = 61/736 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R E   L   +  +   YYQ   P + D+E+D L RR + +    P+L  ++ P   
Sbjct: 31  ESLRDEYEQLADLVRKYRYAYYQEDSPTVSDAEFDELYRRLEELEALHPELVSNDSPT-- 88

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEP 132
             ++GGE++ +   V H     SL+ ++++++L  ++ +      K  D+   I +  E 
Sbjct: 89  -QEVGGEVSSAFAAVEHLQRMYSLDDVFSLDELEAWVRKAEASVAKLGDSVPPIAWLTEL 147

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEV 191
           KIDG  + + Y  GK V AA RGDG +GED++  +  I  IPR LS    P  +E+RGEV
Sbjct: 148 KIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIKEIPRQLSGSGYPSEVEIRGEV 207

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           +I    FL  N+ ++A G+ P ANPRNAA+G LR+ +P +   R L+ FVHG+G    + 
Sbjct: 208 FIPSKAFLEFNESLVAAGKAPLANPRNAAAGSLRQKDPAETAKRPLSMFVHGIGAREGLD 267

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q E  + +   G PV+  ++   TF  ++ +  +    R  L ++IDG+V K+D+F+
Sbjct: 268 AKSQSESYKLLEEWGLPVSPYLKVLETFDDVLKFIADYGERRHKLVHEIDGIVVKIDDFA 327

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  +R PRW  ++K+  ++  T+LLDI + +GRTG +TP   +EPV + G+ +  
Sbjct: 328 TQRALGYTSRVPRWAAAYKYPPEEVHTKLLDIAVNVGRTGRVTPFGLMEPVKVAGSTVGM 387

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV---NERHPDAQP 427
           ATLHN+D +K            + + +GD V++++AG+VIP++V  ++   +++ P  + 
Sbjct: 388 ATLHNQDVVK-----------AKGVMIGDIVILRKAGDVIPEIVGPVLALRDKQEPPVRE 436

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP C +     L P     V   RC    +C +Q  ER+ H  SR AF+IE LG
Sbjct: 437 FVMPTECPSCGT----PLAPAKESDVDI-RCPNAKSCPSQLRERVFHVASRGAFDIEALG 491

Query: 488 KQQLDFFFKSEDPAF-SIRIPADIFTLQRRQQTST----TKIENILGFGD---------- 532
            +      +  +P    +   A +F+L R           K    +G G+          
Sbjct: 492 WEAAVALTQPAEPETPPLTSEARLFSLTREDLADVLIRREKRSKGVGTGEYELVPYFYTK 551

Query: 533 ----------VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
                      +   L+  + K +   L R + +L IRHVG   +R+LA  + S      
Sbjct: 552 GTAKSPSKPTATTEKLFAELEKAKQQPLWRVLVALSIRHVGPTASRALATAFGSMDAIRN 611

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
                +AH          V  VG  IA A+ E++    +   V++            + +
Sbjct: 612 ATEEQMAH----------VDGVGPTIAVALKEWFAVDWHNEIVDSWAAAGVRMEDERDAS 661

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
           V   +E   +V TGTL    R +A+E +   G   S  +S+ T  ++ G++ G+KL+KA+
Sbjct: 662 VPRTLEGLTVVVTGTLPNFSRDEAKEAIIIRGGKASGSVSKNTSYLVAGESAGTKLDKAE 721

Query: 703 QLGVKIMNEEQFLFLL 718
           QLGV +++E+ F  LL
Sbjct: 722 QLGVPVLDEDGFRELL 737


>gi|125718295|ref|YP_001035428.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK36]
 gi|166216249|sp|A3CNX3|DNLJ_STRSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|125498212|gb|ABN44878.1| DNA ligase, putative [Streptococcus sanguinis SK36]
          Length = 652

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 228/698 (32%), Positives = 368/698 (52%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  R+     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRV-----RKEFPQVSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YE G  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYENGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++     +++ +  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++L
Sbjct: 229 EVLNKLADLDFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EALEVPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTIENLLELEN---FKEKSANKLYTAIQASKKNSAERLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPRLSQASQEEIAA----------IDSLGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LG
Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 610 ANVSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDED 647


>gi|312984361|ref|ZP_07791702.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05]
 gi|310894255|gb|EFQ43336.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05]
          Length = 666

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 221/710 (31%), Positives = 378/710 (53%), Gaps = 55/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++     P
Sbjct: 2   LTLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG+++    KV H IP LS+  +++  +L+ F  R+    QK   + + + +E
Sbjct: 59  DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRM----QKLVGHPVEYNVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 115 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVRGEC 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++      E  
Sbjct: 173 YMGKEAFAKLNAEREEQGLVVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEI 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++ +QKM  LGF  N   R+  T   + ++ +E  + R++L Y IDG+V K+D+  
Sbjct: 233 T-SQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLG 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +  
Sbjct: 292 IEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 352 ASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAYQI 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG + 
Sbjct: 401 PTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +++  +  S+
Sbjct: 454 VKQLI-AKDLVHNV---ADLYHL------TADDLAQLDHFKEKSINNLLTALDNSKQNSV 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  I  LGI HVGA+ AR +          AQ+  N+    + D   +  +  +G  IA+
Sbjct: 504 ELLITGLGIDHVGAKAARLI----------AQKFKNLAKIMSLDVQEIASIDTIGMTIAE 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-----NKKLVFTGTLQKIQRHK 665
           ++  ++  P     ++  L+E   ++     +  +EIE     +K +V TG L+   R +
Sbjct: 554 SMTTYFAQPEAQKVIDE-LRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRSE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
             + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +
Sbjct: 613 FTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAI 662


>gi|295692390|ref|YP_003601000.1| DNA ligase [Lactobacillus crispatus ST1]
 gi|295030496|emb|CBL49975.1| DNA ligase [Lactobacillus crispatus ST1]
          Length = 668

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 221/710 (31%), Positives = 379/710 (53%), Gaps = 55/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++     P
Sbjct: 4   ITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG+++    KV H IP LS+  +++  +L+ F  R+    QK   + + + +E
Sbjct: 61  DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRM----QKLVGHPVEYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++      E  
Sbjct: 175 YMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEI 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++ +QKM  LGF  N   R+      + ++ +E  + R++L Y IDG+V K+D+  
Sbjct: 235 T-SQHQAIQKMHDLGFHTNETGRKLKILDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLG 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +  
Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             + IR+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 354 ASLHNPDYL-----------NEKGIRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAYQI 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG + 
Sbjct: 403 PTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +++  +  S+
Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAQLDHFKEKSINNLLTALDNSKQNSV 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  I  LGI HVGA+ AR +          AQ+  N+    + D   +  +  +G  IA+
Sbjct: 506 ELLITGLGIDHVGAKAARLI----------AQKFKNLAKIMSLDVQEIASIDTIGMTIAE 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-----NKKLVFTGTLQKIQRHK 665
           ++  ++  P     ++  L+E + ++     +  +EIE     +K +V TG L+   R +
Sbjct: 556 SMTTYFAQPEAQKVIDE-LRESALNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
             + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +
Sbjct: 615 FTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAI 664


>gi|15610151|ref|NP_217530.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Rv]
 gi|31794191|ref|NP_856684.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis AF2122/97]
 gi|121638896|ref|YP_979120.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662865|ref|YP_001284388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra]
 gi|148824204|ref|YP_001288958.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis F11]
 gi|161350059|ref|NP_337609.2| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CDC1551]
 gi|167967816|ref|ZP_02550093.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra]
 gi|215431968|ref|ZP_03429887.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
 gi|219559049|ref|ZP_03538125.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T17]
 gi|224991388|ref|YP_002646077.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254365649|ref|ZP_04981694.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|260188040|ref|ZP_05765514.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CPHL_A]
 gi|260206343|ref|ZP_05773834.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis K85]
 gi|289448688|ref|ZP_06438432.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A]
 gi|289553196|ref|ZP_06442406.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605]
 gi|289571216|ref|ZP_06451443.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17]
 gi|289575722|ref|ZP_06455949.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85]
 gi|289755132|ref|ZP_06514510.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
 gi|294993895|ref|ZP_06799586.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 210]
 gi|297635642|ref|ZP_06953422.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN 4207]
 gi|297732640|ref|ZP_06961758.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN R506]
 gi|306777310|ref|ZP_07415647.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001]
 gi|306785860|ref|ZP_07424182.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003]
 gi|306789901|ref|ZP_07428223.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004]
 gi|306794711|ref|ZP_07433013.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005]
 gi|306798954|ref|ZP_07437256.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006]
 gi|306969091|ref|ZP_07481752.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009]
 gi|306973427|ref|ZP_07486088.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010]
 gi|307081136|ref|ZP_07490306.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011]
 gi|307085740|ref|ZP_07494853.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012]
 gi|313659972|ref|ZP_07816852.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN
           V2475]
 gi|54036987|sp|P63973|DNLJ_MYCTU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|54036988|sp|P63974|DNLJ_MYCBO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215822|sp|A1KN09|DNLJ_MYCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216214|sp|A5U726|DNLJ_MYCTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781375|sp|C1AGD0|DNLJ_MYCBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2791611|emb|CAA16099.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE
           SYNTHASE [NAD+]) [Mycobacterium tuberculosis H37Rv]
 gi|31619786|emb|CAD96726.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE
           SYNTHASE [NAD+]) [Mycobacterium bovis AF2122/97]
 gi|121494544|emb|CAL73025.1| Probable dna ligase [nad dependent] ligA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|134151162|gb|EBA43207.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507017|gb|ABQ74826.1| DNA ligase (NAD dependent) LigA [Mycobacterium tuberculosis H37Ra]
 gi|148722731|gb|ABR07356.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis F11]
 gi|224774503|dbj|BAH27309.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289421646|gb|EFD18847.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A]
 gi|289437828|gb|EFD20321.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605]
 gi|289540153|gb|EFD44731.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85]
 gi|289544970|gb|EFD48618.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17]
 gi|289695719|gb|EFD63148.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
 gi|308214358|gb|EFO73757.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001]
 gi|308329532|gb|EFP18383.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003]
 gi|308333670|gb|EFP22521.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004]
 gi|308337029|gb|EFP25880.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005]
 gi|308340842|gb|EFP29693.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006]
 gi|308353381|gb|EFP42232.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009]
 gi|308357226|gb|EFP46077.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010]
 gi|308361179|gb|EFP50030.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011]
 gi|308364771|gb|EFP53622.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012]
 gi|323718395|gb|EGB27569.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CDC1551A]
 gi|326904628|gb|EGE51561.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis W-148]
 gi|328457668|gb|AEB03091.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 4207]
          Length = 691

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 227/709 (32%), Positives = 364/709 (51%), Gaps = 49/709 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L     P+ P   +
Sbjct: 15  RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 71

Query: 79  GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG    + F+ V H    LSL+  +  ++L  +  RI+     +  ++  +  E KIDG 
Sbjct: 72  GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +PE++EVRGEV+ 
Sbjct: 128 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 187

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG        
Sbjct: 188 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 247

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             ++    +R  G PV+     A    G+   + Y+ E    R  + ++IDG+V KVDE 
Sbjct: 248 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ + 
Sbjct: 305 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVG 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   IK         R G  + +GD V++++AG+VIP+V+  +V  R    + F 
Sbjct: 365 QATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFI 413

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +  +   K G   A  RC     C  Q  ER+ H  SR+  +IE LG +
Sbjct: 414 MPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYE 468

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                 +++     I    ++F L  R    T       G    +   L  +++K +   
Sbjct: 469 AGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAP 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA  + S       ++ I A + D    L  V  VG  IA
Sbjct: 525 LWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTIA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            A+ E++    +   V+         +   +++V   +    +V TG+L    R  A+E 
Sbjct: 575 AAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEA 634

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL
Sbjct: 635 IVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 683


>gi|238854176|ref|ZP_04644523.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4]
 gi|238833252|gb|EEQ25542.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4]
          Length = 668

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 226/722 (31%), Positives = 379/722 (52%), Gaps = 70/722 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  QA +++  L +++    + YY    P++ D+ YD   +    +   FPDL  S+  
Sbjct: 4   LTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTSDSI 63

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++GGE+   L KV H IP LS+  +++ ++L++F  RI +       + + + +E
Sbjct: 64  T---QRVGGEIKSDLSKVEHPIPMLSMGDVFSKDELKEFDERITKLV----GHPVAYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G + +ANPRNAA+G LR+L+   IT  R L+ F++      + 
Sbjct: 175 YMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPKN 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQTGRRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +++
Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTVVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DY++            + +R+GD V + +AG++IP++  +++N+R  D++P+ 
Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPYQ 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487
            P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG  
Sbjct: 402 IPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGPR 454

Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             KQ +D  F        +   AD++ L   Q      +  +  F D S+TNL  SI   
Sbjct: 455 IVKQLIDKNF--------VNDVADLYHLSNEQ------LSQLDHFKDKSITNLLTSIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  S E  +F LGI HVGA+ AR + + Y + +  +Q               L  +  +G
Sbjct: 501 KQNSAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658
           + IA+++  ++  P    + + LL+E+  S      +G  E+       + K +V TG L
Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               R +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +
Sbjct: 607 SDFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIVKI 666

Query: 719 QQ 720
           ++
Sbjct: 667 EK 668


>gi|256852262|ref|ZP_05557648.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN]
 gi|260661706|ref|ZP_05862617.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN]
 gi|282934844|ref|ZP_06340077.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
 gi|297205571|ref|ZP_06922967.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16]
 gi|256615308|gb|EEU20499.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN]
 gi|260547453|gb|EEX23432.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN]
 gi|281301075|gb|EFA93386.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
 gi|297150149|gb|EFH30446.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16]
          Length = 669

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 234/721 (32%), Positives = 393/721 (54%), Gaps = 68/721 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+ + A++E+ +L ++++   + YY    P + D+ YD   ++   +   FP+L     P
Sbjct: 4   LNKKNAQEEIETLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQKLVELEKQFPELVT---P 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GGE+   L KV H +P LS+  +++ ++L +F  RI    QK     + + +E
Sbjct: 61  DSITQRVGGEIKSDLGKVEHQVPMLSMGDVFSKDELFEFDQRI----QKLVGGPVAYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRG 189
            KIDG  +++ Y  GK + A+ RG+G  GEDV+  ++ I  IP++L    PE    EVRG
Sbjct: 117 LKIDGLSLSLEYVDGKLIQASTRGNGRIGEDVTKNVQYIDDIPKIL----PEKLTTEVRG 172

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTS 247
           E Y+ K  FL LN E    G   +ANPRNAA+G LR+L+P     R L+ F++  +    
Sbjct: 173 ECYMGKAAFLKLNTERDENGEAIFANPRNAAAGSLRQLDPKVTKKRNLSTFIYTWVNPPK 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           EI +  Q++ +Q+M  LGF  N   R+      + +Y +E  S R +L Y IDG+V KVD
Sbjct: 233 EITS--QHQAIQQMSKLGFHTNETGRKLANLDEVFAYIDEYTSKRDSLSYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQKQLG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PV + G  
Sbjct: 291 DLTLQKQLGNTVKVPRWEIAYKFPPEEQETIVHEIVWTVGRTGVVTPTAVMDPVELAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A LHN D +K            +D+R+GD V + +AG++IP++ ++++++R  ++Q 
Sbjct: 351 VSRAVLHNPDLLK-----------QKDVRIGDTVKLHKAGDIIPEISEVVLSKRPANSQV 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C   +V       G++  A RC    AC AQ  E + HF SR A +I GLG
Sbjct: 400 YEIPTECPSCGQSLVH----LEGEV--ALRCINP-ACPAQIEEGIIHFASRPAMDIMGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +    + +     ++  AD++ L      +   +  +  FGD S++NL  +I+  R 
Sbjct: 453 PKIVRQLIQHD----LVKDVADLYHL------TADDLAELDHFGDKSISNLLTAIDNSRQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +  LGI HVGA+ A       L  Q F + +N I+  +  D   L  +  +G+ 
Sbjct: 503 NSVELLLNGLGIDHVGAKAA------LLIVQRF-KNLNKIMQASVSD---LTAIDTIGET 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSE------IENKKLVFTGTL 658
           IA++I  ++       +V+ L++E+  S   I    ++VS E       +NK +V TG L
Sbjct: 553 IAESITTYFAQ----ASVQKLVQELIDSGVNIDYLGEDVSEEEIVDNFFKNKTVVLTGKL 608

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               R +  + +  LGA V++ +S+KTD +I G + GSKL KA+ L + ++ EE+ +  +
Sbjct: 609 AHFTRSEFTKKLESLGAKVTSSVSKKTDYVIYGTDAGSKLTKAESLKIALLTEEEAIEKI 668

Query: 719 Q 719
           Q
Sbjct: 669 Q 669


>gi|308377195|ref|ZP_07441467.2| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008]
 gi|13882885|gb|AAK47423.1| DNA ligase [Mycobacterium tuberculosis CDC1551]
 gi|308348655|gb|EFP37506.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008]
          Length = 679

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 227/709 (32%), Positives = 364/709 (51%), Gaps = 49/709 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L     P+ P   +
Sbjct: 3   RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 59

Query: 79  GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG    + F+ V H    LSL+  +  ++L  +  RI+     +  ++  +  E KIDG 
Sbjct: 60  GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +PE++EVRGEV+ 
Sbjct: 116 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG        
Sbjct: 176 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             ++    +R  G PV+     A    G+   + Y+ E    R  + ++IDG+V KVDE 
Sbjct: 236 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ + 
Sbjct: 293 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVG 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   IK         R G  + +GD V++++AG+VIP+V+  +V  R    + F 
Sbjct: 353 QATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFI 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +  +   K G   A  RC     C  Q  ER+ H  SR+  +IE LG +
Sbjct: 402 MPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYE 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                 +++     I    ++F L  R    T       G    +   L  +++K +   
Sbjct: 457 AGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAP 512

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA  + S       ++ I A + D    L  V  VG  IA
Sbjct: 513 LWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTIA 562

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            A+ E++    +   V+         +   +++V   +    +V TG+L    R  A+E 
Sbjct: 563 AAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEA 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL
Sbjct: 623 IVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 671


>gi|300361107|ref|ZP_07057284.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03]
 gi|300353726|gb|EFJ69597.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03]
          Length = 668

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 228/722 (31%), Positives = 378/722 (52%), Gaps = 70/722 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  QA +++  L +++    + YY    PI+ D+ YD   +    +   FPDL  S+  
Sbjct: 4   LTHNQASQKVDELRKKLDEWAEDYYAKDAPIVEDAVYDKAYQELVELEKRFPDLVTSDSI 63

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++GGE+   L KV H IP LS+  +++ ++L++F  RI +       + + + +E
Sbjct: 64  T---QRVGGEIKSDLSKVEHPIPMLSMGDVFSKDELKEFDDRITKLV----GHPVAYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G + +ANPRNAA+G LR+L+   IT  R L+ F++        
Sbjct: 175 YMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPRN 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQTGRRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A + PV + G +++
Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETIVKEIEWTVGRTGVVTPTAVMNPVQLAGTVVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DY++            + +R+GD V + +AG++IP++  +++N+R  D++P+ 
Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487
            P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG  
Sbjct: 402 IPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGPR 454

Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             KQ +D  F        +   AD++ L   Q      +  +  F D S+TNL  SI   
Sbjct: 455 IVKQLIDKKF--------VNDVADLYHLTNEQ------LSQLDHFKDKSITNLLTSIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  S E  +F LGI HVGA+ AR + + Y + +  +Q               LI +  +G
Sbjct: 501 KQNSAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELISIDTIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658
           + IA+++  ++  P    + + LL+E+  S      +G  E+       + K +V TG L
Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               R +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +
Sbjct: 607 SDFTRSEFTKKLQNLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666

Query: 719 QQ 720
           ++
Sbjct: 667 EK 668


>gi|288919113|ref|ZP_06413452.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f]
 gi|288349457|gb|EFC83695.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f]
          Length = 715

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 225/717 (31%), Positives = 358/717 (49%), Gaps = 56/717 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L +++  H   YY    P I D+EYDAL R  D I   +P+L  ++ P     K
Sbjct: 39  RARAAELARDLEEHAHRYYVLDAPTIADAEYDALLRELDQIEQQYPELRTADSPT---QK 95

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           + G  +     VTH    LSL+ +++ +    +  R  R     +     +  E KIDG 
Sbjct: 96  VAGSYSTLFTPVTHLERLLSLDNVFDEDGFHAWAARAAR-----EQPVEAWLCELKIDGL 150

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            + + YE G  V AA RGDG +GED++  +R + ++P R+    +PE++EVRGEVY    
Sbjct: 151 AVDLVYEAGALVSAATRGDGRTGEDITLNVRTLRSVPARLRGPGVPELLEVRGEVYFPTA 210

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN  ++  G+ P+ANPRNAA+G LR+ +P     R L   VHGLG       + Q 
Sbjct: 211 GFAELNASLVEAGKAPFANPRNAAAGSLRQKDPRVTAGRPLAMIVHGLGANRGFEVESQS 270

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
              +++  LG PV+   +       ++++       R  + ++IDG+V KVD F+ Q++L
Sbjct: 271 AAYERLAELGLPVSTRYQVCAGVDEVLAFVRAWGEQRHDVEHEIDGVVIKVDGFAQQRRL 330

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +++PRW ++ K+  ++ +TRL DI + +GRTG +TP   LEPV + G+ +  ATLHN
Sbjct: 331 GATSKAPRWAVAFKYPPEEVTTRLRDIQVNVGRTGRVTPFGVLEPVKVAGSTVGMATLHN 390

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D +           G + + +GD V++++AG+VIP++V  +V+ R    + F  P+ CP
Sbjct: 391 IDEV-----------GRKGVLIGDVVVLRKAGDVIPEIVSPVVDLRDGSERAFVMPTHCP 439

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR   P+    +   RC   ++C AQ  E + H  SR A +I+GLG +      
Sbjct: 440 ECGTELVR---PEGEVDI---RCPNTVSCPAQLRESVFHLASRGALDIDGLGYETATVLL 493

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   IR   DIF L      +    E + GF    V  +   I   R+  L R + 
Sbjct: 494 AE----GRIRDIGDIFHL------APESFEGLRGFASKKVDQILRGIEAARDRPLWRLLV 543

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            L IRHVG   AR+LA+          E+ ++ A        L  V  VG  IA+A+V++
Sbjct: 544 GLSIRHVGPTAARALAR----------ELRSLDAIAAAPAERLAAVDGVGPKIAEAVVDW 593

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKAQEYVT 671
           + +PR+      ++  ++    R     + E    ++   +V TGTLQ   R  A E V 
Sbjct: 594 FADPRH----RDVVARIAAGGARLADEGAGEGPGLLDGVVVVITGTLQGWSRDTATEAVQ 649

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
             G  V+  +S+KT  ++ G +PG SK +KA  L + +++E  F  LL       R+
Sbjct: 650 ARGGKVTGSVSKKTTFVVAGVDPGASKYQKALSLRIPLLDETGFAALLGDGADAARV 706


>gi|291277000|ref|YP_003516772.1| DNA ligase [Helicobacter mustelae 12198]
 gi|290964194|emb|CBG40040.1| DNA ligase [Helicobacter mustelae 12198]
          Length = 669

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 234/707 (33%), Positives = 372/707 (52%), Gaps = 65/707 (9%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++  EQ  K++  L++ ++YH   YY    PI  D EYD L         A P+  R + 
Sbjct: 19  SMEKEQYEKKVEQLKK-MAYH---YYVLDDPISSDEEYDILYHEVKGYEEAHPEAIREDS 74

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P     ++G    L   K TH     SL+ +++ E+L  +  +IY     K+     FT 
Sbjct: 75  PT---QRVGMPPLLEFQKNTHRKKMWSLDDVFSFEELESWCQKIY-----KNHPEAIFTC 126

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVR 188
            PK DG  + + YE G  + A  RGDG  GE V+   + IP+IP    L IP   +IE+R
Sbjct: 127 SPKFDGASLNLLYENGDLISATTRGDGMQGELVTQNAKTIPSIP----LKIPHKGLIEIR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV I+K+DF ALN + +  G   +ANPRNAA+G +R+L+ +    R L F   G G+ +
Sbjct: 183 GEVVIAKSDFEALNKKRMEEGEALFANPRNAAAGSMRQLDSSITAQRKLRFIPWGFGQHT 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +      E L+++ C GF     V+       I  YY E+   R  LP  +DG+V  +D
Sbjct: 243 -LGIDSFKEALEQVFCFGFSPIPFVQLCKNMQEIQRYYEEIMQRREDLPMMLDGMVVMLD 301

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F +Q+++G   +SPR+  ++KF   +  T++L I  Q+GRTG++TPVA LEP+ I GA 
Sbjct: 302 SFLMQEKMGFTIKSPRFACAYKFPAVEKFTKILSIINQVGRTGVITPVAELEPIEIEGAR 361

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +T ATLHN   I+            +DIR+ D V+V R+G+VIPK++   +  R  + + 
Sbjct: 362 VTRATLHNYKEIQ-----------KKDIRIFDEVVVIRSGDVIPKIIRPNIARRTGEEKA 410

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CPIC  R++ +            RC   L C+A+  E + HFVS+ A NI+GLG
Sbjct: 411 IEPPTHCPICGERLLIE--------EIFIRCQ-NLQCTARVRESIVHFVSKKALNIDGLG 461

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +   F     A  ++   D+++L   +      +  + GF +    NL ++I   +N
Sbjct: 462 EKIIYQLF----AAGLVKNITDLYSLDYEE------LLRLEGFKEKKAKNLLEAIANTKN 511

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           I L R I +LGI H+G   ++ LA  +   + F           + D+ +L R+   G  
Sbjct: 512 IDLWRLIHALGIEHIGEGASKKLALAF-GLECF-----------DKDYDALTRIDGFGKE 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++ +EF Q   N   +  LLK ++P + + +  V +    KK+V TG++Q+  R +  
Sbjct: 560 MAESFLEFSQ--VNARLIHVLLKILTPKVQQTQNPVQNYFSAKKIVLTGSMQR-SREEVA 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             +  +GA +S  +S K D +I G+NPGSKL+KA++LGV I++E +F
Sbjct: 617 ALLEGVGAKISTSVSGKVDFVIYGENPGSKLDKARELGVGILSEAEF 663


>gi|160945211|ref|ZP_02092437.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442942|gb|EDP19947.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii
           M21/2]
          Length = 671

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 234/715 (32%), Positives = 371/715 (51%), Gaps = 57/715 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L +EQA+K +  L   I  ++  YY    P + D EYDAL R    +   FP L  +
Sbjct: 1   MEYLELEQAKKRVKELRAIIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P     K+GG  +  L KVTH++   SL   ++ ++LR F  R+     + +     +
Sbjct: 61  ASPT---QKVGGTASSKLPKVTHAVKMESLLDAFSFDELRDFDRRVREAGVEPE-----Y 112

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG   ++ YE G+ V A+ RGDG  GEDV+A +RAI +IP+ L  + PE +EVR
Sbjct: 113 VVEIKIDGLSCSLEYENGQLVRASTRGDGVVGEDVTANVRAIRSIPKTLK-DAPEFLEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+    F  L  E    G  P+ NPRNAA+G LR+ +     +R L+ FV  + +  
Sbjct: 172 GEVYMPHGAFQHLCAEQELQGAAPFKNPRNAAAGSLRQKDARITGSRGLSIFVFNVQQIR 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI---RSTLPYDIDGLVY 304
                   E L  ++ LG PV+    + +  H I     E+++I   RS L +D+DG V 
Sbjct: 232 GKTLTKHSESLDYLKSLGLPVSP---RYHVVHDIEDAIAEIENIGQNRSKLDFDMDGAVI 288

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++F+ ++ +G   + PRW I+ K+  +   T L  I++ +GRTG+LTP A  +PV + 
Sbjct: 289 KVNDFAQRELMGSTNKFPRWAIAFKYPPEVKETTLRSIEVAVGRTGVLTPTACFDPVFLA 348

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  ATLHNED+I+              + +GD + V++AG++IP+V+   V      
Sbjct: 349 GTTVARATLHNEDFIRQF-----------GLCIGDTIQVRKAGDIIPEVIG--VTHHAEG 395

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P++ P+ CP C + VV   +       AA RC     C AQ L  + HF SRDA +IE
Sbjct: 396 AEPYTMPTVCPSCGAPVVHLEDE------AALRCVNP-ECPAQALRNIIHFASRDAMDIE 448

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG+       + E     +   ADI+TL R Q     K      F + S  NL  +I  
Sbjct: 449 GLGEAVATQLVEKE----LVHSAADIYTLTREQLLELDK------FKEKSADNLLQAITA 498

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L++ +F  GIR++G + A  LA+++ + Q   +     ++          ++   
Sbjct: 499 SKQNNLDKLLFGFGIRNIGDKAAALLAEHFGTLQAIREATAEQVS----------QIDGF 548

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++AQ++VEF+        V   L +   ++    +    ++  K LV TGTL+ + R+
Sbjct: 549 GGVMAQSVVEFFAKEGTTDLVHR-LADAGVNMQWKGEPKGDKLAGKTLVVTGTLETLSRN 607

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+  + + G   S  +S+KT  ++ G   GSKL KAQ LGV ++ E++FL +LQ
Sbjct: 608 EAEALIVKNGGKASGSVSKKTAYVVAGAAAGSKLTKAQALGVPVLTEQEFLAMLQ 662


>gi|124026855|ref|YP_001015970.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL1A]
 gi|166216227|sp|A2C5E6|DNLJ_PROM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123961923|gb|ABM76706.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL1A]
          Length = 690

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 238/724 (32%), Positives = 376/724 (51%), Gaps = 70/724 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL +L  + +Y    YY    P I D+ YD L R    I +  P L   + P+    ++
Sbjct: 13  KELRALLNKANY---SYYVLDSPEIDDAVYDQLYRELIEIENIHPSLITDDSPS---QRL 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEPK 133
           GG  +     V H+IP LSL+  +N+ +L  +  RI +    ++ N      +    E K
Sbjct: 67  GGVPSKGFKNVEHNIPLLSLDNAFNLNELESWYGRISKLISSENKNIKKVDDLELICELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           IDG  I++RYE G    AA RGDG +GED++  IR I TIP R+L  N P  +E+RGE +
Sbjct: 127 IDGNAISLRYENGILTRAATRGDGKTGEDITTNIRTISTIPLRLLLENPPSWVEIRGEAF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL------GK 245
           +  N F  LN E     +  +ANPRN+ +G LR+L+P  + +R L+FF + L        
Sbjct: 187 MPNNIFNKLNIERKNTDQPLFANPRNSCAGTLRQLDPKIVASRKLDFFAYSLYFPENWEP 246

Query: 246 TSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           T   F K   Q E L+ ++ +GF VN       T +    YY   +  +  L Y  DG+V
Sbjct: 247 TDNNFKKPISQSESLEFLKNIGFKVNTTYETTKTLNEANKYYKYWEVKKDFLAYATDGIV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+D+F +Q  LG   ++PRW I+ K+  ++ +T+L  I  Q+GR+G +TPVA  E + +
Sbjct: 307 VKIDKFDIQNLLGATNKAPRWAIAVKYPAEEKATKLRKIIFQVGRSGAVTPVAEFESIEL 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  ATLHN   +  L           D+   D ++V++AGE+IP+V+ +I   R  
Sbjct: 367 AGTSVNRATLHNAKRLASL-----------DLHYEDTIIVRKAGEIIPEVIRVIKEFRKV 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+    P  CP C S+++ + N    K +          C A+    L+H+VS+ + NI
Sbjct: 416 DAKLVQLPQNCPECNSKLILESNEAITKCI-------NYGCEAKLKGLLRHWVSKGSMNI 468

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYD 540
           +GLG++ ++    +E    SI   AD++ L+         I+++L    FG+ S  NL  
Sbjct: 469 DGLGEKIINQLV-NEGYVKSI---ADLYKLE---------IDSLLELERFGEKSANNLLI 515

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            IN+ +N +  + ++ LGI H+G   A+SL+  + S +       N IA  + + +S I 
Sbjct: 516 EINESKNKNWHKQLYGLGIPHIGEANAKSLSNNFNSIEEL-----NAIAKESPEKISNIY 570

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVF 654
               G+ +  +IV+++ +  N   ++ L      LKE   S   +  N S+  + K  V 
Sbjct: 571 G--FGNEMKDSIVKWFDDSNNQTLIKELKAIGFSLKESLDS--NYNSNQSNVFDGKSFVL 626

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL  + R +A+E +   G  VS+ +S+KTD ++ G+  GSKL KAQ+LGVKI+NE + 
Sbjct: 627 TGTLDSLTRDEAKELIESAGGKVSSSISKKTDFLVSGEKAGSKLNKAQELGVKIINENEL 686

Query: 715 LFLL 718
             LL
Sbjct: 687 KLLL 690


>gi|294631529|ref|ZP_06710089.1| DNA ligase, NAD-dependent [Streptomyces sp. e14]
 gi|292834862|gb|EFF93211.1| DNA ligase, NAD-dependent [Streptomyces sp. e14]
          Length = 732

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 239/749 (31%), Positives = 376/749 (50%), Gaps = 90/749 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR+E + L +++  H   YY    P+I D+++D L R  +A+   +P+L     P+ P 
Sbjct: 4   EAREEHARLAEQVEEHRFRYYVKDAPVISDADFDRLLRSLEALEERYPEL---RTPDSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G        V H    LSL+  +N EDL  ++ RI R   +  +    F  E K+D
Sbjct: 61  QKVAGSYETEFTAVEHRERMLSLDNTFNDEDLAAWVDRIAR---ELGEQEYHFLCELKVD 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G+   AA RGDG +GED++  +R I  IP R+    +P+++E+RGEVY  
Sbjct: 118 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLNGDKVPDLVEIRGEVYFP 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
              F  LN  ++A G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G      A  
Sbjct: 178 MAGFEELNARLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIG------ALE 231

Query: 254 QYEMLQKMR-------CLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLV 303
            YE L ++          G P +   R  +   GI   ++YY E    R ++ ++IDG+V
Sbjct: 232 GYEGLTRLSEAYDLLSTWGLPTSPHNRVVDGLDGIRDFIAYYGEH---RHSVEHEIDGVV 288

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+DE  LQ +LG  AR+PRW I++K+A ++ +T+LL+I + +GRTG +TP A++EPV +
Sbjct: 289 VKLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLLNIRVGVGRTGRVTPYAQVEPVTV 348

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R  
Sbjct: 349 AGSEVEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDG 397

Query: 424 DAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             + F  P  CP C +     L P K G +    RC     C AQ  ERL +   R A +
Sbjct: 398 SEREFVMPGECPECGT----PLRPMKEGDV--DLRCPNARTCPAQLRERLFYLAGRKALD 451

Query: 483 IEGLGKQQLDFFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTST 521
           IE  G        K  +PA   +R   D+F L                    +R  +T  
Sbjct: 452 IEHFGYVAAAALTKPLEPAEPPLRDEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGE 511

Query: 522 TKIENIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
            KI  +     G    +   + ++I   +   L R +  L IRHVG   A +LA+ + S 
Sbjct: 512 EKIATVFANQQGEPKKNALAMLENIAAAKQRPLARVLTGLSIRHVGPVAAEALAREFRSI 571

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
               Q     +A+             VG IIA ++ E++    +    + ++++   +  
Sbjct: 572 DRIEQASEEELANTEG----------VGQIIAASLKEWFAEEWH----QEIIRKWRAAGV 617

Query: 638 RHEKNVSSE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           R E+    E      +E   +V TGTL+   R  A+  +   GA V+  +S+KT  ++VG
Sbjct: 618 RMEEEGPGEDEGPRPLEGLTVVVTGTLEHFTRDGAKAALQSRGAKVTGSVSKKTSFVVVG 677

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           DNPGSK +KA QL V +++E  F  LL Q
Sbjct: 678 DNPGSKYDKAMQLKVPVLDETGFGVLLDQ 706


>gi|242309547|ref|ZP_04808702.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter pullorum
           MIT 98-5489]
 gi|239524118|gb|EEQ63984.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter pullorum
           MIT 98-5489]
          Length = 648

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 235/689 (34%), Positives = 374/689 (54%), Gaps = 63/689 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPD-LARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
           YY    PI  D EYD L  +        P+ +A+    + P  ++G  +  S  K  H  
Sbjct: 20  YYILDDPIASDEEYDTLYHQIKEFEAKNPNQIAK----DSPTQRVGDNILESFSKSEHIE 75

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
              SLE I++ ++L+++I R+ +        ++ FT++PK DG  + + YE GK   A  
Sbjct: 76  RMWSLEDIFDTQELQEWINRVSK------GENLLFTIDPKFDGASLNLLYENGKLQKATT 129

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GE+V+   + I +IP  LS+   + IE+RGE  I+KNDF  LN E +  G   +
Sbjct: 130 RGDGFIGENVTQNAKTIQSIP--LSIPYTDRIEIRGECVIAKNDFERLNQERLENGESLF 187

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAA+G LR+L+ + IT  R L F   G+G  + I     +E++QK+R  GF  +  
Sbjct: 188 ANPRNAAAGSLRQLD-SKITAKRKLQFIPWGVGFCT-IEENSFFELMQKIRSFGFLTSPF 245

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            +       I   Y  + S R + P  +DG+V ++D  +LQK LG   ++PR+  ++KF 
Sbjct: 246 SKLCKNLQEIEESYQNLISKRDSYPIMLDGMVIRIDSIALQKNLGFTIKAPRFACAYKFP 305

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             +   ++LDI +Q+GRTG++TPVA LEPV I GA +  ATLHN D I+           
Sbjct: 306 AIEKKAKILDITLQVGRTGVVTPVAILEPVMIEGAKVARATLHNFDEIR----------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DI + D V++ R+G+VIPK++  + + R    +    P+ CPIC S ++ +      K
Sbjct: 355 KKDILINDSVILIRSGDVIPKIIKSLPSLRDGTQKKCEIPTHCPICGSELLIE-----EK 409

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+        L+C A+    L HF+S+ A NI+GLGK+ +D  F+       I    DIF
Sbjct: 410 LIKCQ----NLSCKARLKNSLIHFISKKALNIDGLGKRIIDLLFERG----KITKIEDIF 461

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           +LQ         +E + GF D  + N+ ++I + + I L RFI +LGI H+G   ++ LA
Sbjct: 462 SLQYED------LEGLEGFKDKKIHNILNAIKESKGIDLWRFINALGIEHIGEGASKKLA 515

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             +     F Q+         +D+++L      G+ +A ++VEF     N   ++ LL  
Sbjct: 516 NTF--GLEFCQK-------GFEDFITL---DGFGEEMANSLVEFCH--INQERIKNLLNI 561

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++P   +  ++ ++ +  K  V TGTL + +R   QE +  LGA VS+ +S+KTD ++ G
Sbjct: 562 LTPKTTQTPQSTTN-LSGKTFVITGTLSQ-KRESYQEILESLGAKVSSSVSKKTDFLLCG 619

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  GSKL KAQ+LGVKI++E+ F  L+++
Sbjct: 620 EEAGSKLTKAQELGVKILDEKDFWELIKE 648


>gi|229493359|ref|ZP_04387148.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121]
 gi|229319675|gb|EEN85507.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121]
          Length = 700

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 221/709 (31%), Positives = 357/709 (50%), Gaps = 42/709 (5%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR++ + L +E+  H   YY    P+I D  +D L  + +A+   +PDL     P+ P 
Sbjct: 14  EAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQYPDL---RTPDSPT 70

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +GG        V H    LSL+ +++  +LR +I ++    +++    + +  E KID
Sbjct: 71  QLVGGGFATDFTSVDHLERMLSLDNVFDESELRAWIAKV----EQETGPELHYLCEVKID 126

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEV 191
           G  + + YE GK V AA RGDG +GE V+     I  IP  L+      IP ++EVRGEV
Sbjct: 127 GVALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEYPIPSLLEVRGEV 186

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           +    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HG G+     
Sbjct: 187 FFRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFGRMEGFE 246

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QY+    +   G PV+    +      +V         R  + ++IDGLV KVDE S
Sbjct: 247 PASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVVKVDEMS 306

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L ++LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV + G+ ++ 
Sbjct: 307 LHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVAGSTVSL 366

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   +K         R G  + +GD V++++AG+VIP+V+  + + R    + F  
Sbjct: 367 ATLHNGSEVK---------RKG--VLIGDTVVLRKAGDVIPEVLGPVADVRDGTEREFVM 415

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +      K G +    RC     C AQ  ER+ H   R AF+IE LG + 
Sbjct: 416 PTHCPECGTLLA---PAKEGDVDV--RCPNQQYCPAQLRERVFHVSGRGAFDIEVLGYEA 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                +++     I    D+F+L   +           G    +   L  +++  ++  L
Sbjct: 471 ATGLLEAK----VIGDEGDLFSLDAEKLIEVPIFRTNAGSLSANGKRLLANLDSAKDKPL 526

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   AR+LA  + S Q   +   +           L  V  VG  IA 
Sbjct: 527 WRVLVALSIRHVGPTAARALAGEFGSLQRIREASVD----------ELAAVDGVGSTIAA 576

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           A+VE++    +   V+             + ++   +E   +V TG+L+   R +A+E +
Sbjct: 577 AVVEWFSVDWHQQIVDKWASAGVRMEDERDDSIPRNLEGLSIVVTGSLETYSRDQAKEAI 636

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G   +  +S+KT  ++VG+ PGSK +KA +LGV +++E+ F  LL+
Sbjct: 637 LVRGGKAAGSVSKKTAFVVVGEAPGSKHDKAVELGVPVLDEDGFRRLLE 685


>gi|145224827|ref|YP_001135505.1| NAD-dependent DNA ligase LigA [Mycobacterium gilvum PYR-GCK]
 gi|190359265|sp|A4TDZ8|DNLJ_MYCGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145217313|gb|ABP46717.1| DNA ligase, NAD-dependent [Mycobacterium gilvum PYR-GCK]
          Length = 712

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 233/720 (32%), Positives = 362/720 (50%), Gaps = 62/720 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+    L  E+  H   YY    PII D+E+D L RR  A+   +P+L     P+ P   
Sbjct: 26  RRSWQELADEVREHQFRYYIRDAPIITDAEFDQLLRRLQALEDEYPEL---RTPDSPTQL 82

Query: 78  IGGEMNLSLFKVT-HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +GG    + F    H    LSL+ ++++E+L  +  RI    + +      +  E KIDG
Sbjct: 83  VGGAGFATDFTAAEHLERMLSLDNVFDLEELAAWAARI----RTEIGADAQYLCELKIDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVY 192
             + + Y  G+   AA RGDG +GEDV+   R I  IP  LS      +P ++EVRGEV+
Sbjct: 139 VALALVYRDGRLERAATRGDGRTGEDVTLNARTIEDIPERLSGTNEFPLPTVVEVRGEVF 198

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  ++A G+ P+ANPRN+A+G LR+ NP     R L    HGLG       
Sbjct: 199 FRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGLGHVESSGG 258

Query: 252 K---GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYK 305
                 ++  + ++  G PV++   Q      +   ++Y+ E    R  + ++IDG+V K
Sbjct: 259 SPFPTLHDAYRALKAWGLPVSDHTAQVTGLDAVTERIAYWGEH---RHDVEHEIDGVVVK 315

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD  +LQ++LG  +R+PRW +++K+  ++A TRLLDI + +GRTG +TP A +EPV + G
Sbjct: 316 VDAVALQRRLGATSRAPRWAVAYKYPPEEAQTRLLDIRVNVGRTGRVTPFAYMEPVKVAG 375

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN   +K         R G  + +GD V++++AG+VIP+V+  +V+ R    
Sbjct: 376 STVGLATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGSE 424

Query: 426 QPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           + F FP+ CP C S    +L P K G   A  RC    +C AQ  ER+ H   R AF+IE
Sbjct: 425 REFVFPTHCPECGS----ELAPAKEGD--ADIRCPNTRSCPAQLRERVFHVAGRGAFDIE 478

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQR----RQQTSTTKIENILGFGDVSVTNLYD 540
           GLG +      +    A  I    D+F L      R +  TTK   +   G   + NL  
Sbjct: 479 GLGYEAATALLQ----AGVIADEGDLFGLTADDLLRTELFTTKAGELSANGKRLLANL-- 532

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
              K +   L R + +L IRHVG   AR+LA  + S +         +A           
Sbjct: 533 --GKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLEAIETASEEQLAGTEG------- 583

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
              VG  IA A+++++    +   V+   +         + ++   +E   +V TG+L  
Sbjct: 584 ---VGPTIAAAVIDWFTVDWHRAIVDKWREAGVRMADERDASIERTLEGLSIVVTGSLAG 640

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R +A+E +   G   +  +S+KT  ++ GD PGSK +KA +LGV +++E+ F  LL +
Sbjct: 641 FSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAIELGVPVLDEDGFRRLLAE 700


>gi|300783591|ref|YP_003763882.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
 gi|299793105|gb|ADJ43480.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
          Length = 726

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 226/712 (31%), Positives = 357/712 (50%), Gaps = 51/712 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+  S+L +E+  H   YY    PII D ++D L      +  A P L     P  P  +
Sbjct: 31  RERHSALAEELRDHQFRYYVLDSPIISDGQFDELLGELQRLEDAHPALV---TPESPTQR 87

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG  +       H    LSL+ ++  ++   ++ R+     +K+     F  E KIDG 
Sbjct: 88  VGGTFSTEFTAHDHLERMLSLDNVFAEDEFLAWVERV-----EKEVGRTEFLAELKIDGL 142

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193
            I + YE G    A  RGDG +GEDV+  +R +  +P+ L+      +P ++EVRGEV+ 
Sbjct: 143 AINLLYENGHLTRALTRGDGRTGEDVTLNVRTLDQVPQTLTGTDQFPVPALVEVRGEVFF 202

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFA 251
              DFL LN +M+  G+ PYANPRN A+G LR+ +P  ITR   L    HGLGK +    
Sbjct: 203 RVEDFLELNAKMVEAGKPPYANPRNTAAGSLRQKDPK-ITRERRLRLICHGLGKRAGFEP 261

Query: 252 KGQYEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + Q E    +   G PV+   +    A+     ++Y+ E    R    ++IDG+V KVD+
Sbjct: 262 QRQSEAYDALAAWGLPVSPHSKVLTSADELTAHIAYWGEH---RHDAEHEIDGVVIKVDQ 318

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +R+PRW I++K+  ++A T LLDI + +GRTG +TP A  EPV + G+ +
Sbjct: 319 VALQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVGVGRTGRVTPFAVTEPVTVAGSTV 378

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN++ +K         R G  + +GDR+++++AG+VIP+V+  +V+ R  D + F
Sbjct: 379 SRATLHNQEEVK---------RKG--VLIGDRIVIRKAGDVIPEVLGPVVDARTGDEREF 427

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C + +      +  K +   RC     C AQ  ERL H   R AF+IE LG 
Sbjct: 428 VMPTHCPECGTELA--YQKEGDKDI---RCPNTRFCPAQLRERLFHLAGRGAFDIEVLGY 482

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +           A  +    D+F L               G    +   L  +++  ++ 
Sbjct: 483 EAAVALLD----ARVVADEGDVFDLNEDSLAEVELFRTKAGELSANARKLLSNLDAAKDR 538

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L + + +L IRHVG   A++LA+ + S +   Q               L  V  VG  I
Sbjct: 539 PLWKVLVALSIRHVGPTAAQALAREFGSIERIEQATEE----------ELSAVDGVGPTI 588

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A A  E++    +   VE   +         ++++   +E   +V TG+L    R +A+E
Sbjct: 589 AHATQEWFDVAWHREIVEKWRRAGVRMEEARDESIPRHLEGLSIVVTGSLDGFSRDEAKE 648

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V   G   +  +S+KT  ++VGD+PGSK +KA QL V +++E  F  LL+Q
Sbjct: 649 VVMARGGKAAGSVSKKTAFVVVGDSPGSKYDKAVQLKVPVLDEAGFRVLLEQ 700


>gi|315638276|ref|ZP_07893457.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21]
 gi|315481623|gb|EFU72246.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21]
          Length = 644

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 234/684 (34%), Positives = 364/684 (53%), Gaps = 66/684 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY+  +P+  D EYD L R   A     P L     P+ P  KI   +     K  H   
Sbjct: 18  YYEEDEPLASDEEYDRLIREIKAFEKENPSLI---SPDSPTQKIAPTIQSKFKKSRH--- 71

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
              L K+W++ED+  F     R W K+      F +EPK DG  + + Y+KG+ V AA R
Sbjct: 72  ---LSKMWSMEDV--FDEEELRAWAKRARCEDGFFIEPKFDGASLNLLYQKGRLVSAATR 126

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GEDV+  ++ I  IP+++  N    IE+RGEV I K DF  LN++        +A
Sbjct: 127 GDGEIGEDVTLNVKEIANIPQII--NYEGEIEIRGEVVILKEDFERLNEKRAKENLSLFA 184

Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           NPRNAASG LR+L+ T IT  R L F+  G+GK +  FAK   E++  +R LGF  +  V
Sbjct: 185 NPRNAASGSLRQLD-TQITKERNLKFYPWGVGKHTLSFAK-HSELMCFVRELGFLKDEFV 242

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R       ++++Y E+ S+R   P  +DG+V +VD+ +L K+LG   + P++M + KF  
Sbjct: 243 RVCKNLDEVLTHYKELLSLRDLKPMMMDGMVVRVDDIALCKELGYTIKYPKFMAAFKFPA 302

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            + STRL+ + +Q+GR+G++TPVA LEPVN+ G ++ +A+LHN D I+ L          
Sbjct: 303 LEKSTRLVGVSLQVGRSGVITPVAVLEPVNLDGVVVKSASLHNFDEIERL---------- 352

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
            ++R+ D V V R+G+VIPK+  +  + R  +A     P  CP+C+S ++ +     G L
Sbjct: 353 -NLRLNDFVSVIRSGDVIPKITKVFKDRRGENALKIERPKLCPVCESELLDE-----GAL 406

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           +        L C A+ +  + +FVS+   NI+GLG+  ++  ++ +     I     IF 
Sbjct: 407 IKCQ----NLDCKARLVNSIIYFVSKKCLNIDGLGESIVELLYEKQ----KITSIESIFR 458

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L+ +        E + GF +  +T L ++I   +   L RFI +LGI H+G   A+ LA 
Sbjct: 459 LKFQD------FEGLEGFKEKKITKLLNAIESAKICPLYRFITALGIEHIGEVAAKKLAL 512

Query: 573 YYLS--YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
            +    YQ   +E  N+                 G+ +A ++VEF +   N   +EA  K
Sbjct: 513 SFDKEWYQKSFEEYKNLEGF--------------GEQMALSLVEFTR--VNQARIEAFYK 556

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++    + E +  S    K  V TGTL +  R + +  + +LG  VS+ +S+KTD ++ 
Sbjct: 557 LLNLENEKQEISTQSPFYEKTFVITGTLSR-PRDEFKALIERLGGKVSSSVSKKTDFVLF 615

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQF 714
           G+  GSKLEKA++LGVK ++E QF
Sbjct: 616 GEEAGSKLEKARELGVKCIDEIQF 639


>gi|300743918|ref|ZP_07072938.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567]
 gi|300380279|gb|EFJ76842.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567]
          Length = 740

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 237/733 (32%), Positives = 384/733 (52%), Gaps = 65/733 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E + L   I      YYQ   P + D+EYD L RR + I   +P L  ++ P     +
Sbjct: 30  RAEYAELTDTIRAARHDYYQADAPTLSDAEYDRLYRRLEQIEAQYPALIANDSPT---QE 86

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE++ +   VTH +   SLE ++++E+LR ++T+     +     +  +  E KIDG 
Sbjct: 87  VGGEVSEAFSPVTHLVRMYSLEDVFSLEELRAWLTKAEENTRLLTGTAPQWLTELKIDGL 146

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKN 196
            + + Y  G  V AA RGDG +GEDV+  +R I +IP+ L+  N P  +EVRGEV+IS  
Sbjct: 147 AVNLLYRNGVLVRAATRGDGTTGEDVTHNVRTIASIPQKLAGENHPAELEVRGEVFISSA 206

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           DF  LN++M++ G+ P+ANPRNAA+G LR+ +      R L+ +VHG+G  + +    QY
Sbjct: 207 DFKKLNEKMVSEGKNPFANPRNAAAGSLRQKDSAVTAERPLSMYVHGVGSRTGLDVNSQY 266

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           +  +++   G P +   +   +   I+ Y  E    R +L ++IDG+V KV++F  Q QL
Sbjct: 267 QTYEQLAAWGLPTSPYSKLFTSVDDILRYIAEYGEKRHSLVHEIDGIVIKVNDFVAQTQL 326

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R PRW +++K+  ++ +T+LLDI + +GRTG +TP   +EPV + G+ +  ATLHN
Sbjct: 327 GYTSRVPRWAVAYKYPPEEVNTKLLDIRVDVGRTGRVTPYGVMEPVLVSGSTVERATLHN 386

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           +D +K            + + +GD V++++AG+VIP++V  +V  R+   + F  P+ CP
Sbjct: 387 QDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVALRNGHEREFVMPTECP 435

Query: 436 ICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
            C +     L P K G +    RC    +C AQ  ER+ +  SR AF+IE LG +     
Sbjct: 436 SCGT----TLAPGKEGDV--DMRCPNYRSCPAQLTERIYYAASRGAFDIEALGFEAAKAL 489

Query: 495 FKSEDP--------AFSIRIPA-DIFTLQRRQQ-----TSTTKIENILGF---------- 530
               +P        AF   + A D+  ++ R++       T K E +  F          
Sbjct: 490 TAPAEPEQPPLTSEAFLFDLTAEDLRDVKIRREKKVKGVGTGKFELVPYFYTKPTKAKPE 549

Query: 531 --GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
                +  NL+  + K ++  L R + +L +RHVG   AR+LA  + S    AQ   + +
Sbjct: 550 PVPTKNTQNLFVELEKAKSQPLWRVLVALSLRHVGPTAARALATEFGSMDAIAQADRDRL 609

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSE- 646
           A           V  VG +IA +I+E++    +    E L +     +    E++ S E 
Sbjct: 610 AA----------VDGVGGVIADSIIEWFATDWH---REVLARWADAGVRMEDERDASIER 656

Query: 647 -IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +E   +V TGTL    R  A+E +   G   S  +S+KT  ++ G + GSKL+KA+ LG
Sbjct: 657 TLEGVTVVVTGTLVNYSRDSAKEAIIVRGGRASGSVSKKTHFVVAGASAGSKLDKAEALG 716

Query: 706 VKIMNEEQFLFLL 718
           + +++E+ F  LL
Sbjct: 717 IPVLDEDGFTKLL 729


>gi|226305867|ref|YP_002765827.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4]
 gi|254781402|sp|C0ZXK3|DNLJ_RHOE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226184984|dbj|BAH33088.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4]
          Length = 700

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 221/709 (31%), Positives = 357/709 (50%), Gaps = 42/709 (5%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR++ + L +E+  H   YY    P+I D  +D L  + +A+   +PDL     P+ P 
Sbjct: 14  EAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQYPDL---RTPDSPT 70

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +GG        V H    LSL+ +++  +LR +I ++    +++    + +  E KID
Sbjct: 71  QLVGGGFATDFTSVDHLERMLSLDNVFDESELRGWIAKV----EQETGPELHYLCEVKID 126

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEV 191
           G  + + YE GK V AA RGDG +GE V+     I  IP  L+      IP ++EVRGEV
Sbjct: 127 GVALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEFPIPTLLEVRGEV 186

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           +    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HG G+     
Sbjct: 187 FFRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFGRMEGFE 246

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QY+    +   G PV+    +      +V         R  + ++IDGLV KVDE S
Sbjct: 247 PASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVVKVDEMS 306

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L ++LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV + G+ ++ 
Sbjct: 307 LHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVAGSTVSL 366

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   +K         R G  + +GD V++++AG+VIP+V+  + + R    + F  
Sbjct: 367 ATLHNGSEVK---------RKG--VLIGDTVVLRKAGDVIPEVLGPVADVRDGTEREFVM 415

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +      K G +    RC     C AQ  ER+ H   R AF+IE LG + 
Sbjct: 416 PTHCPECGTLLA---PAKEGDVDV--RCPNQQHCPAQLRERVFHVSGRGAFDIEVLGYEA 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                +++     I    D+F+L   +           G    +   L  +++  ++  L
Sbjct: 471 ATGLLEAK----VIGDEGDLFSLDAEKLIEVPIFRTNAGALSANGKRLLANLDSAKDKPL 526

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   AR+LA  + S Q   +   +           L  V  VG  IA 
Sbjct: 527 WRVLVALSIRHVGPTAARALAGEFGSLQRIREASVD----------ELAAVDGVGSTIAA 576

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           A+VE++    +   V+             + ++   +E   +V TG+L+   R +A+E +
Sbjct: 577 AVVEWFSVDWHQQIVDKWASAGVRMEDERDDSIPRNLEGLSIVVTGSLETYSRDQAKEAI 636

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G   +  +S+KT  ++VG+ PGSK +KA +LGV +++E+ F  LL+
Sbjct: 637 LVRGGKAAGSVSKKTAFVVVGEAPGSKHDKAVELGVPVLDEDGFRRLLE 685


>gi|302554316|ref|ZP_07306658.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM
           40736]
 gi|302471934|gb|EFL35027.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM
           40736]
          Length = 731

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 230/742 (30%), Positives = 374/742 (50%), Gaps = 76/742 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR++ + L ++I  H   YY    P++ D+E+D L R  +A+   +P+L     P+ P 
Sbjct: 15  EAREKHARLAEQIEEHRFRYYVKDAPVVSDAEFDQLLRSLEALEDEYPEL---RTPDSPT 71

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G        V H    LSL+  +N E+L  +  RI R   ++D     F  E K+D
Sbjct: 72  QKVAGAYATEFTAVEHRERMLSLDNTFNEEELAAWAERIARELGEQD---YHFLCELKVD 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G+   AA RGDG +GED++  +R I  IP R+    +P+++E+RGEVY  
Sbjct: 129 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPERLKGDRVPDLVEIRGEVYFP 188

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK----TSEI 249
              F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G     T   
Sbjct: 189 MEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGALEGFTGLT 248

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                Y++L      G P +   R  +   G++ +       R ++ ++IDG+V K+DE 
Sbjct: 249 RLSQAYDLLG---TWGLPTSRHNRVVDGLEGMLEFIAHYGENRHSVEHEIDGVVVKLDEI 305

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  +R+PRW I++K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + 
Sbjct: 306 PLQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVE 365

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F 
Sbjct: 366 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFV 414

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487
            P+ CP C +  +R +      L    RC     C AQ  ERL +   R A +IE  G  
Sbjct: 415 MPAECPECGT-ALRPMKEGDVDL----RCPNARTCPAQLRERLFYLAGRKALDIEHFGYV 469

Query: 488 -KQQLDFFFKSEDPA-------FSIRI----PADIFTL-------QRRQQTSTTKIENIL 528
               L    + +DP        F + I    P   + L       +R  +T   K+  I 
Sbjct: 470 AAAALTAPLEPKDPPLVDEGDLFDLTIDQLLPIKAYVLDPDSGLPKRDPKTGEEKVATIF 529

Query: 529 ----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
               G    +   + ++I   +   L R I SL IRHVG   A +LA+ + S +   Q  
Sbjct: 530 ANQEGNPRKNALAMLENIAAAKERPLARIITSLSIRHVGPVAAEALAREFRSIERIDQAT 589

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +A              VG  IA ++ +++    +      ++++   +  R E   +
Sbjct: 590 EEELAVTEG----------VGPTIAASLKQWFAEDWH----REIIRKWKAAGVRMEAEST 635

Query: 645 SE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E      +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGD+PGSK 
Sbjct: 636 GEDEGPRPLEGLTVVVTGTLEHFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDSPGSKY 695

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
           +KA QL V ++NE+ F  LL+Q
Sbjct: 696 DKAMQLKVPVLNEDGFGVLLEQ 717


>gi|220912112|ref|YP_002487421.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
 gi|254778146|sp|B8HFJ3|DNLJ1_ARTCA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|219858990|gb|ACL39332.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
          Length = 770

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 226/748 (30%), Positives = 377/748 (50%), Gaps = 68/748 (9%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R+ IP +A+     R+E  +L   I  +   YYQ   P++ D+E+D L RR + I    P
Sbjct: 21  RESIPSDAI-----REEYENLSDLIRKYRFAYYQDDAPLVSDAEFDTLFRRLEEIEALHP 75

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +L  ++ P     ++GGE + +   V H     SLE +++IE+L  ++ R      K  D
Sbjct: 76  ELVANDSPT---QEVGGEASAAFAAVEHLQRMYSLEDVFSIEELEAWLNRAEASIAKLGD 132

Query: 124 NSI--FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LN 180
            +    +  E KIDG  + + Y  GK V AA RGDG +GED++  +  I  IP+ LS   
Sbjct: 133 GTAQAAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIKEIPQQLSGEG 192

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            P  +EVRGEV+I    F   N+ +I  G+ P ANPRNAA+G LR+ +P +   R L  F
Sbjct: 193 YPSEVEVRGEVFIPSKAFAEFNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPLKMF 252

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           VHG+G    + A+ Q E    ++  G PV+           ++ + ++    R  L ++I
Sbjct: 253 VHGIGAREGLEARSQSETYALLKEWGLPVSPYFEVLEARADVLGFISKYGEQRHKLLHEI 312

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KVD+F+ Q+ LG   R PRW +++K+  ++  T+LLDI + +GRTG +TP   +E
Sbjct: 313 DGIVIKVDDFATQRALGYTTRVPRWAVAYKYPPEEVHTKLLDIQVNVGRTGRVTPFGMME 372

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV- 418
           PV + G+ +  ATLHN+D +K            + +++GD V++++AG+VIP++V  ++ 
Sbjct: 373 PVKVAGSTVEMATLHNQDVVK-----------AKGVKIGDIVVLRKAGDVIPEIVGPVLA 421

Query: 419 --NERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHF 475
             +++ P  + F  P+ CP C +     L P K G +    RC  G +C +Q  ER+ H 
Sbjct: 422 LRDQQDPPVRDFVMPTECPACGT----PLAPAKEGDVDI--RCPNGKSCPSQLRERVFHL 475

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTL-------------QRRQQTST 521
             R  F+IE LG +      +  +P    +   A +F L             +R +  +T
Sbjct: 476 AGRGGFDIEALGWEAAIALTQPAEPDVPPLTSEAALFDLTREDLADVKIRREKRSKGVAT 535

Query: 522 TKIENILGF-----------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
            + E +  F              S   L+  ++K ++  L R + +L IRHVG   +R+L
Sbjct: 536 GEYELVPYFYSKGTAKSPSKPTASTEKLFKELDKAKSQPLWRVLVALSIRHVGPRASRAL 595

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A+ + +           +AH          V  VG  IA A+ E++    +   V+    
Sbjct: 596 AQAFGTMDGIRAASEEELAH----------VDGVGPTIAAALKEWFAEDWHREIVDRWAA 645

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
                    +++    +E   +V TG+L    R +A+E +   G   S  +S+ T  ++ 
Sbjct: 646 AGVRMEDERDESTPRTLEGLTVVVTGSLPNFSRDEAKEAILVRGGKASGSVSKNTSYVVA 705

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G++ G+KL+KA+QLG+++++E+ F  LL
Sbjct: 706 GESAGTKLDKAEQLGIRVLDEDGFRLLL 733


>gi|315445158|ref|YP_004078037.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1]
 gi|315263461|gb|ADU00203.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1]
          Length = 701

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 233/720 (32%), Positives = 362/720 (50%), Gaps = 62/720 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+    L  E+  H   YY    PII D+E+D L RR  A+   +P+L     P+ P   
Sbjct: 15  RRSWQELADEVREHQFRYYIRDAPIITDAEFDQLLRRLQALEDEYPEL---RTPDSPTQL 71

Query: 78  IGGEMNLSLFKVT-HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +GG    + F    H    LSL+ ++++E+L  +  RI    + +      +  E KIDG
Sbjct: 72  VGGAGFATDFTAAEHLERMLSLDNVFDLEELAAWAARI----RTEIGADAQYLCELKIDG 127

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVY 192
             + + Y  G+   AA RGDG +GEDV+   R I  IP  LS      +P ++EVRGEV+
Sbjct: 128 VALALVYRDGRLERAATRGDGRTGEDVTLNARTIEDIPERLSGTNEFPLPTVLEVRGEVF 187

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  ++A G+ P+ANPRN+A+G LR+ NP     R L    HGLG       
Sbjct: 188 FRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGLGHVESSGG 247

Query: 252 K---GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYK 305
                 ++  + ++  G PV++   Q      +   ++Y+ E    R  + ++IDG+V K
Sbjct: 248 SPFPTLHDAYRALKAWGLPVSDHTAQVTGLDAVTERIAYWGEH---RHDVEHEIDGVVVK 304

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD  +LQ++LG  +R+PRW +++K+  ++A TRLLDI + +GRTG +TP A +EPV + G
Sbjct: 305 VDAVALQRRLGATSRAPRWAVAYKYPPEEAQTRLLDIRVNVGRTGRVTPFAYMEPVKVAG 364

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN   +K         R G  + +GD V++++AG+VIP+V+  +V+ R    
Sbjct: 365 STVGLATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGSE 413

Query: 426 QPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           + F FP+ CP C S    +L P K G   A  RC    +C AQ  ER+ H   R AF+IE
Sbjct: 414 REFVFPTHCPECGS----ELAPAKEGD--ADIRCPNTRSCPAQLRERVFHVAGRGAFDIE 467

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQR----RQQTSTTKIENILGFGDVSVTNLYD 540
           GLG +      +S      I    D+F L      R +  TTK   +   G   + NL  
Sbjct: 468 GLGYEAATALLQS----GVIADEGDLFGLTADDLLRTELFTTKAGELSANGKRLLANL-- 521

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
              K +   L R + +L IRHVG   AR+LA  + S +         +A           
Sbjct: 522 --GKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLEAIETASEEQLAGTEG------- 572

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
              VG  IA A+++++    +   V+   +         + ++   +E   +V TG+L  
Sbjct: 573 ---VGPTIAAAVIDWFTVDWHRAIVDKWREAGVRMADERDASIERTLEGLSIVVTGSLAG 629

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R +A+E +   G   +  +S+KT  ++ GD PGSK +KA +LGV +++E+ F  LL +
Sbjct: 630 FSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAIELGVPVLDEDGFRRLLAE 689


>gi|262047040|ref|ZP_06019999.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US]
 gi|293381897|ref|ZP_06627865.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1]
 gi|260572617|gb|EEX29178.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US]
 gi|290921544|gb|EFD98578.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1]
          Length = 668

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 220/710 (30%), Positives = 378/710 (53%), Gaps = 55/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++     P
Sbjct: 4   ITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG+++    KV H IP LS+  +++  +L+ F  R+    QK   + + + +E
Sbjct: 61  DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRM----QKLVGHPVEYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++      E  
Sbjct: 175 YMGKEAFAKLNAEREEQGLVVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEI 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++ +QKM  LGF  N   R+  T   + ++ +E  + R++L Y IDG+V K+D+  
Sbjct: 235 T-SQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLG 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +  
Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 354 ASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAYQI 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG + 
Sbjct: 403 PTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +++  +  S+
Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAQLDHFKEKSINNLLTALDNSKQNSV 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  I  LGI HVGA+ AR +          AQ+  N+    + D   +  +  +G  IA+
Sbjct: 506 ELLITGLGIDHVGAKAARLI----------AQKFKNLAKIMSLDVQEIASIDTIGMTIAE 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-----NKKLVFTGTLQKIQRHK 665
           ++  ++  P     ++  L+E   ++     +  +EIE     +K +V TG L+   R +
Sbjct: 556 SMTTYFAQPEAQKVIDE-LRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
             + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +
Sbjct: 615 FTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAI 664


>gi|134102614|ref|YP_001108275.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004701|ref|ZP_06562674.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL
           2338]
 gi|166216238|sp|A4FMS5|DNLJ_SACEN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|133915237|emb|CAM05350.1| DNA ligase, NAD-dependent [Saccharopolyspora erythraea NRRL 2338]
          Length = 727

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 225/715 (31%), Positives = 361/715 (50%), Gaps = 56/715 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+  + L +++  H   YY    P I D E+D L      +    P L    DP+ P   
Sbjct: 44  RERYADLVEQVRAHQFRYYVLDSPTISDGEFDELFTELQTLESDHPAL---RDPDSPTQV 100

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG  +     V H    LSL+  ++ ++LR ++ R+    +++  +S  +  E KIDG 
Sbjct: 101 VGGTFSTDFTAVDHLERMLSLDNAFDPDELRAWVERV----EREVGSSAHYLCELKIDGL 156

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            I + Y  GK   A  RGDG +GEDV+  +R +  +P  L+      +P ++E+RGEV+ 
Sbjct: 157 AINLLYRDGKLERALTRGDGRTGEDVTLNVRTMDDVPDQLTGTDEYPVPALVEIRGEVFF 216

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
             ++F  LN  ++  G+ P+ANPRN+A+G LR+ +P    +R L    HGLGK      K
Sbjct: 217 RVDEFAQLNASLVEAGKPPFANPRNSAAGSLRQKDPRVTKSRPLRMICHGLGKREGFEPK 276

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E    +R  G  V+   +  +T   ++ + +     R++  ++IDG+V KVDE SLQ
Sbjct: 277 QQSESYAALRAWGLRVSPHTKVLSTVDEVLEHIDYWGKHRNSAEHEIDGVVVKVDEVSLQ 336

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I++K+  +QA+TRLLDI + +GRTG +TP A +EPV + G+ +  AT
Sbjct: 337 RRLGATSRAPRWSIAYKYPPEQATTRLLDIQVAVGRTGRVTPYAVMEPVKVAGSTVARAT 396

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D ++            + + +GDRV++++AG+VIP+V+  +V+ R    + F  P+
Sbjct: 397 LHNADQVR-----------HKGVLIGDRVVIRKAGDVIPEVLGPVVDVRDGSEREFVMPT 445

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +    + K G +    RC     C  Q+ ERL     R AF+IE LG + + 
Sbjct: 446 ECPDCGTALA---HQKEGDV--DLRCPNSHNCIGQRRERLFQLAGRKAFDIEVLGYEGVS 500

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                   A  +    D+F L       TT      G   V+   L  ++   +   L R
Sbjct: 501 ALLS----AGVVFDEGDLFDLNEEALLKTTLFRTDDGSLSVNGGKLLANLESAKQQPLWR 556

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +L IRHVG   AR LA+ + S     +     +A              VG  IA A+
Sbjct: 557 VLVALSIRHVGPIAARVLAREFGSLDRIQEASEEELAAGEG----------VGPTIATAV 606

Query: 613 VEFYQNP--RNIC-----AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            E++     R I      A   +  E   SI RH   +S       +V TG+L+   R +
Sbjct: 607 REWFDVDWHREIVRKWSEAGVRMADERDESIERHLTGLS-------IVVTGSLEGFSRDE 659

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E +   G   +  +S+KT  ++VG++PGSK +KA Q+ V +++E+ F  LL+Q
Sbjct: 660 AKELIMARGGRAAGSVSKKTAFVVVGESPGSKYDKAVQMKVPVLDEDGFRVLLEQ 714


>gi|77414096|ref|ZP_00790264.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515]
 gi|77159848|gb|EAO70991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515]
          Length = 648

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 231/692 (33%), Positives = 369/692 (53%), Gaps = 67/692 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DS+YD L R    +    P+      PN P +++GG +     K  H  P
Sbjct: 15  YYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHRVGGLVLEGFEKYQHEYP 71

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     K +  +  +  E KIDG  +++ Y  G     A R
Sbjct: 72  LYSLQDAFSKEELIAFDKRV-----KAEFPTASYMAELKIDGLSVSLTYVNGILQVGATR 126

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  F A+N E  A G + +A
Sbjct: 127 GDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEAINIEKRANGEQEFA 184

Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+LN   +  R L  F++   + S    + Q ++L+++   GF VN+   
Sbjct: 185 NPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKETQDDVLKELESYGFSVNHHRL 242

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
            +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG   ++PRW I++KF  +
Sbjct: 243 ISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIAYKFPAE 302

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DYI             +
Sbjct: 303 EKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEK 351

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR+GD V+V +AG++IP V+++++++R+   +    P  CP C S +V   +       
Sbjct: 352 DIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPKLCPSCGSELVHFEDE------ 404

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
            A RC   L C  Q  ERL HF SRDA NI G G   ++  F     A  I   ADI+ L
Sbjct: 405 VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD----AHLIADVADIYRL 459

Query: 514 QRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
                     IE++L   G  + S T +Y +I   +  S E+ +F LGIRHVG++ +R L
Sbjct: 460 ---------SIEDLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGLGIRHVGSKASRLL 510

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
            + + + +  +Q     IA           +  +G +IA+++  F++       V+ LL+
Sbjct: 511 LEEFGNLRQLSQASQESIA----------SIDGLGGVIAKSLHTFFEKEE----VDKLLE 556

Query: 631 EVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           E++    +     K VS++ +   L  V TG L+K+ R++A+E +  LGA V+  +S+KT
Sbjct: 557 ELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVTGSVSKKT 616

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           D+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 617 DLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 648


>gi|120403104|ref|YP_952933.1| NAD-dependent DNA ligase LigA [Mycobacterium vanbaalenii PYR-1]
 gi|166216216|sp|A1T6X7|DNLJ_MYCVP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119955922|gb|ABM12927.1| DNA ligase, NAD-dependent [Mycobacterium vanbaalenii PYR-1]
          Length = 707

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 233/719 (32%), Positives = 370/719 (51%), Gaps = 62/719 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++   L  E+  H   YY    PII D+E+DA+ RR +A+  A P+L     P+ P   
Sbjct: 26  RRQWQELADEVRDHQFRYYVRDAPIITDAEFDAMLRRLEALEEAHPEL---RTPDSPTQL 82

Query: 78  IGGEMNLSLFKVT-HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +GG    + F    H    LSL+ ++  ++L  +  RI    + +      +  E KIDG
Sbjct: 83  VGGAGFATDFTAAEHLERMLSLDNVFTPDELAAWAARI----RTEIGADAQYLCELKIDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVY 192
             +++ Y  G+    A RGDG +GEDV+   R I  +P  L+      +P ++EVRGEV+
Sbjct: 139 VALSLVYRDGRLERGATRGDGRTGEDVTLNARTIEDVPEKLTGTEEFPLPSVLEVRGEVF 198

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  ++A G+ P+ANPRN+A+G LR+ NP     R L    HGLG   +   
Sbjct: 199 FRIADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGLGHIEDAAG 258

Query: 252 ---KGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYK 305
              +  ++  + ++  G PV+    Q      +   ++Y+ E    R  + ++IDG+V K
Sbjct: 259 FPFRTLHDAYRALQAWGLPVSPHTAQVTGLDAVTERIAYWGEH---RHDVEHEIDGVVVK 315

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VDE +LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP A +EPV I G
Sbjct: 316 VDEVALQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAYMEPVKIAG 375

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN   +K         R G  + +GD V++++AG+VIP+V+  +V+ R    
Sbjct: 376 STVGLATLHNGSEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGSE 424

Query: 426 QPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           + F  P+ CP C +    +L P K G   A  RC     C AQ  ER+ H   R AF+IE
Sbjct: 425 REFVMPTHCPECGT----ELAPAKEGD--ADIRCPNSRTCPAQLRERVFHVAGRGAFDIE 478

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQR----RQQTSTTKIENILGFGDVSVTNLYD 540
           GLG +      +    A  I    D+FTL      R    TTK   +   G   +TNL  
Sbjct: 479 GLGYEAAIALLQ----ARVITDEGDLFTLTADDLLRTDLFTTKAGELSANGKRLLTNL-- 532

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
              K +   L R + +L IRHVG   AR+LA  + S       ++ I+A + ++   L  
Sbjct: 533 --GKAKAQPLWRVLVALSIRHVGPTAARALATEFGS-------LDAIVAASEEE---LAA 580

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           V  VG  IA A+ +++    +   V+             + ++   ++   +V TG+L  
Sbjct: 581 VEGVGPTIAAAVTDWFTVDWHRTIVDKWRAAGVRMADERDASIERTLDGLSIVVTGSLTG 640

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             R +A+E +   G   +  +S+KT  ++ GD+PGSK +KA +LGV +++E+ F  LL+
Sbjct: 641 YSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDSPGSKYDKAIELGVPVLDEDGFRRLLE 699


>gi|158334366|ref|YP_001515538.1| NAD-dependent DNA ligase LigA [Acaryochloris marina MBIC11017]
 gi|190359221|sp|B0C308|DNLJ_ACAM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158304607|gb|ABW26224.1| DNA ligase, NAD-dependent [Acaryochloris marina MBIC11017]
          Length = 675

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 233/722 (32%), Positives = 371/722 (51%), Gaps = 67/722 (9%)

Query: 13  SIEQAR-KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           S +QAR +EL  L Q+ SY    YY    P++ D+ YD L      +   +P L     P
Sbjct: 6   SSDQARVQELRQLLQKASY---AYYGLDAPLMEDAVYDQLYHELVDLEAQYPQLIT---P 59

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G         V H IP  SLE  ++  D+  +  R ++          + T E
Sbjct: 60  DSPTQRVGERPATQFVSVQHRIPLYSLENAFDRGDMDTWDERWHKLVPNLSQEPGYVT-E 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVR 188
            KIDG+ + + YE G  V    RGDG  GE+++  +R I +IP  L LNI   PE +EVR
Sbjct: 119 LKIDGSALALTYENGLLVRGTTRGDGTKGEEITQNVRTIRSIP--LRLNIEHPPEWLEVR 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF---VHGLG 244
           GE ++    F  +N + I  G   +ANPRNAA+G LR+L+   +  R L+FF   +H  G
Sbjct: 177 GEAFLGLQVFDQINRDRIQAGEAEFANPRNAAAGTLRQLDSKVVAERKLDFFAYTIHISG 236

Query: 245 KTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            T ++   + Q++ L+ ++ LGF VN   RQ  +   + +YY++    R  LPY  DG+V
Sbjct: 237 PTDDLALPQTQWQALETLKQLGFRVNPNRRQCESLAEVQTYYDDWSLKRLDLPYLTDGVV 296

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+D   +Q +LG   + PRW I+ K+  ++A+TR+  I + +GRTG LTPVA  +PV +
Sbjct: 297 IKLDNLGVQDELGFTQKFPRWAIAWKYPPEEAATRIEQITVNVGRTGALTPVAEFKPVQL 356

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ ATLHN D I  L           DI +GD V+V++AGE+IP+V+ ++   R  
Sbjct: 357 AGTTVSRATLHNRDRISEL-----------DIHIGDTVVVRKAGEIIPEVLRVLPELRPA 405

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            AQP+  P+ CP C    V+       +  A  RC    +C A     L H+VSR A +I
Sbjct: 406 GAQPYQMPTACPSCGQPAVQ------LETEAVTRCVNA-SCPAILRGSLIHWVSRGALDI 458

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG++ +     S+     ++  AD++ L      +  K+ ++   G      +  +I 
Sbjct: 459 DGLGEKIVGQLTDSQ----MVQSVADLYEL------NEDKLMDLDRMGTKLARKIVSAIA 508

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +     R ++ LGIRHVG+  A+ L + Y +       ++ ++A + D    +  +  
Sbjct: 509 TSKQQPWHRVLYGLGIRHVGSVNAQLLTENYPT-------VDALMAVDGD---KIATIHG 558

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGT 657
           +G  IAQ++ E++Q P N   ++ L      S G   + + SE      +  K  V TGT
Sbjct: 559 IGPEIAQSVYEWFQTPTNQTLIQRL-----QSAGLQFEAIVSESTQPQTLSGKTFVITGT 613

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  ++R +A++ +   G  V+  +S+ T  ++VG + GSKL KAQ LG+  ++E   L L
Sbjct: 614 LPTLKRDQAKQMIQDAGGKVTGSVSKNTSYVVVGADAGSKLTKAQSLGINQLSEADLLAL 673

Query: 718 LQ 719
           LQ
Sbjct: 674 LQ 675


>gi|77409440|ref|ZP_00786135.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1]
 gi|77171952|gb|EAO75126.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1]
          Length = 643

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 231/692 (33%), Positives = 369/692 (53%), Gaps = 67/692 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DS+YD L R    +    P+      PN P +++GG +     K  H  P
Sbjct: 10  YYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHRVGGLVLEGFEKYQHEYP 66

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     K +  +  +  E KIDG  +++ Y  G     A R
Sbjct: 67  LYSLQDAFSKEELIAFDKRV-----KAEFPTASYMAELKIDGLSVSLTYVNGILQVGATR 121

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  F A+N E  A G + +A
Sbjct: 122 GDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEAINIEKRANGEQEFA 179

Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+LN   +  R L  F++   + S    + Q ++L+++   GF VN+   
Sbjct: 180 NPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKETQDDVLKELESYGFSVNHHRL 237

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
            +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG   ++PRW I++KF  +
Sbjct: 238 ISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIAYKFPAE 297

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DYI             +
Sbjct: 298 EKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEK 346

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR+GD V+V +AG++IP V+++++++R+   +    P  CP C S +V   +       
Sbjct: 347 DIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPKLCPSCGSELVHFEDE------ 399

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
            A RC   L C  Q  ERL HF SRDA NI G G   ++  F     A  I   ADI+ L
Sbjct: 400 VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD----AHLIADVADIYRL 454

Query: 514 QRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
                     IE++L   G  + S T +Y +I   +  S E+ +F LGIRHVG++ +R L
Sbjct: 455 S---------IEDLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGLGIRHVGSKASRLL 505

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
            + + + +  +Q     IA           +  +G +IA+++  F++       V+ LL+
Sbjct: 506 LEEFGNLRQLSQASQESIA----------SIDGLGGVIAKSLHTFFEKEE----VDKLLE 551

Query: 631 EVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           E++    +     K VS++ +   L  V TG L+K+ R++A+E +  LGA V+  +S+KT
Sbjct: 552 ELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVTGSVSKKT 611

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           D+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 612 DLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 643


>gi|319744895|gb|EFV97229.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae ATCC 13813]
          Length = 652

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 236/713 (33%), Positives = 378/713 (53%), Gaps = 70/713 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E    EL SL   ++ +   YY    P + DS+YD L R    +    P+      PN 
Sbjct: 1   MENRMNELVSL---LNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNS 54

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P +++GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E K
Sbjct: 55  PTHRVGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRV-----KAEFPTASYMAELK 109

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  +++ Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+
Sbjct: 110 IDGLSVSLTYVNGILQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYL 167

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F A+N E  A G + +ANPRNAA+G LR+LN   +  R L  F++   + S    +
Sbjct: 168 PKESFEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKE 225

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q ++L+++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q
Sbjct: 226 TQDDVLKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQ 285

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ AT
Sbjct: 286 EELGFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRAT 345

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYI             +DIR+GD V+V +AG++IP V+++++++R+   +    P 
Sbjct: 346 LHNVDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPK 393

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +V   +        A RC   L C  Q  ERL HF SRDA NI G G   ++
Sbjct: 394 LCPSCGSELVHFEDE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVE 446

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNIS 549
             F     A  I   ADI+ L          IE++L   G  + S T +Y +I   +  S
Sbjct: 447 KLFD----AHLIADVADIYRL---------SIEDLLTLDGIKEKSATKIYHAIQSSKENS 493

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            E+ +F LGIRHVG++ +R L + + + +  +Q     IA           +  +G +IA
Sbjct: 494 AEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIA 543

Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRH 664
           +++  F++       V+ LL+E++    +     K VS++ +   L  V TG L+K+ R+
Sbjct: 544 KSLHTFFEKEE----VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRN 599

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +A+E +  LGA V+  +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 600 EAKEKLQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652


>gi|255348508|ref|ZP_05380515.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70]
 gi|255503049|ref|ZP_05381439.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70s]
 gi|255506721|ref|ZP_05382360.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D(s)2923]
 gi|296434735|gb|ADH16913.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/150]
 gi|296438453|gb|ADH20606.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/11023]
          Length = 663

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 235/704 (33%), Positives = 381/704 (54%), Gaps = 53/704 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75
           +R +  +L  E+  HD CYY  ++P I D  YD   R    I    P+   S  P   L 
Sbjct: 5   SRDDYIALCTELVEHDRCYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           ++  G+  +    V HS P LS+  ++++++L +F +R     +K    S  ++LE KID
Sbjct: 65  DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S 
Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   ++   +  
Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +
Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDR 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+
Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS C
Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   
Sbjct: 404 PVCHEPVVKE--------KVSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+       I   +DIF L      +   ++ + GF D S+ NL  SI   + ++L+R +
Sbjct: 455 FE----VGLISSCSDIFAL------TEEDLKQVPGFKDRSIQNLLASIAGAKKVALDRLL 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +L I  VG+  A +LA ++ +       ++ +I  + D+   L+ +  +G  +A +IV 
Sbjct: 505 TALSIPFVGSSGAIALADHFGT-------LDKVIEASLDE---LMSIEGIGPKVAASIVA 554

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+    N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  LG
Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLG 613

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             VS+ +S+ T  +I G   G KL+KAQ LG+ I NE + L +L
Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRIL 657


>gi|310657889|ref|YP_003935610.1| DNA ligase [Clostridium sticklandii DSM 519]
 gi|308824667|emb|CBH20705.1| DNA ligase, NAD(+)-dependent [Clostridium sticklandii]
          Length = 683

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 236/709 (33%), Positives = 381/709 (53%), Gaps = 64/709 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +++ L + I +H   YY    P I D+++D L +   A+   +P+   +ED   P  +IG
Sbjct: 13  KINELRERIEHHSILYYVQDSPEISDADFDMLMKELIALEEKYPEYI-TED--SPTQRIG 69

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE      +V HS+  +SL   ++ +DL  F +R+ +   K +     + LE KIDG  +
Sbjct: 70  GEALSKFDQVRHSVQMMSLSNAFSKQDLLDFDSRVRQMIPKPE-----YVLEFKIDGLSV 124

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + YEKGKF   A RGDG  GEDV+  ++ I +IP  L   +  +  VRGEVYI K  F 
Sbjct: 125 ALTYEKGKFKVGATRGDGVVGEDVTKNLKTIKSIPMKLKEEVSLV--VRGEVYIPKEKFK 182

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY-- 255
            LN +    G   +ANPRNAA+G LR+L+ ++IT  R L+ F+  L    EI  K  Y  
Sbjct: 183 ELNLQQEENGLALFANPRNAAAGSLRQLD-SNITAKRPLDIFIFNL---QEIIDKDIYTH 238

Query: 256 -EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK---SIRSTLPYDIDGLVYKVDEFSL 311
            E L+ ++ LG  V+      N +  + + ++E+      R  L ++IDG+V KV++ + 
Sbjct: 239 SEALEYLKALGLKVSP---MRNVYSSMEAVWDEISVWHDKRHELDFEIDGIVIKVNDLAQ 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +  LGE A++PRW I++KF  ++  T++ DI +Q+GRTG +TP A L PV I G+ ++ A
Sbjct: 296 RAMLGETAKAPRWAIAYKFPAERQLTQIEDIIVQVGRTGTITPTAILTPVRIAGSTVSRA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED+IK            +DI++ D   +++AG++IP+V ++ +++R      F  P
Sbjct: 356 TLHNEDFIK-----------AKDIKIKDWAYIQKAGDIIPEVYEVDISKRTGVEYEFKMP 404

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C +  VR      G+  AA +C   + C AQ    + HFVS+ A +I+ LG+  +
Sbjct: 405 ETCPECHTPTVR----VEGE--AALKCP-NITCPAQIKRGIIHFVSKSAMDIDKLGEAIV 457

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              ++    A  I   ADI+ L   +  +  ++      G  SV+NL +SI + +   L+
Sbjct: 458 IQLYE----AGLINDMADIYYLNPDEILALPRM------GSKSVSNLMNSIEESKTAGLD 507

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  LGIR++G + A++LA  Y   +   Q               L+++  +G+ +AQ+
Sbjct: 508 RLLIGLGIRYIGTKAAKTLASVYSDIEQIKQA----------SIEELLQIDEIGEKMAQS 557

Query: 612 IVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I EF++   N+  +E L L  VS S+ +         E  K V TGTL+ ++R +A   +
Sbjct: 558 IFEFFKVEENLNLIERLKLAGVSMSVDKKNSQQKPIFEGMKFVLTGTLETLKRDEAAVLI 617

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +     S+ +S+ T  +I G+  GSKL+KA  LGV ++NEE F  LL+
Sbjct: 618 EERLGKTSSSVSKNTTAVIAGEEAGSKLDKAIALGVAVINEEVFKKLLK 666


>gi|146318834|ref|YP_001198546.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05ZYH33]
 gi|166216250|sp|A4VVK7|DNLJ_STRSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145689640|gb|ABP90146.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus suis 05ZYH33]
          Length = 652

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 219/682 (32%), Positives = 366/682 (53%), Gaps = 59/682 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YYQ  +P + D+EYD L R    +  A P+L     P+ P +++GG+M     K +H  P
Sbjct: 19  YYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHRVGGKMLDGFEKYSHVYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YE G  V  A R
Sbjct: 76  LFSLQDAFSREELEAFDQRV-----RKEFPQATYICELKIDGLSISLTYEAGNLVVGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  +P    L +PE ++  VRGE Y+ K  F  +N +    G   
Sbjct: 131 GDGSVGENITENLKRVADVP----LTLPEAVDITVRGECYMPKASFDRVNKQRQEAGEAE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           + NPRNAA+G LR+L+   +  R L  F++     SE  A  Q ++L+K+  LGF  N+ 
Sbjct: 187 FVNPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSE--ATSQSQVLEKLDALGFVTNHE 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A +      +  ++   R  LPY+IDG+V KV++ ++Q++LG   ++PRW +++KF 
Sbjct: 245 YCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR+GD V+V +AG++IP V+  +V++   + +    PS CP CQS    DL     +
Sbjct: 354 EKDIRIGDTVIVYKAGDIIPAVLK-VVDKYRKEQEIMPIPSHCPSCQS----DLQHYEDE 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           +  A RC   + C +Q + +L+HF SRDA NI GLG   ++  F     A  +   ADI+
Sbjct: 409 V--ALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLFG----AGLVHDVADIY 461

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L      +   +  + GF + S   LY +I   ++ S E  +F LGIRHVG++ ++ L 
Sbjct: 462 KL------TVDDLLTLEGFKEKSANKLYQAIQTSKSNSAECLLFGLGIRHVGSKASKILV 515

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + +   +  A      IA           +  +G +IA+++  F+ +      + A LKE
Sbjct: 516 EKFGDLETLAFADQEAIAS----------LEGLGQVIAKSLTTFFAS-EGAQQLLAELKE 564

Query: 632 VSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
              ++    + V  ++ +    +V TG L++++R++A+  +  LGA V+  +S+KT++++
Sbjct: 565 AKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGANVAGSVSKKTNLVV 624

Query: 690 VGDNPGSKLEKAQQLGVKIMNE 711
            G + GS L KAQ+LG++I +E
Sbjct: 625 AGTDAGSTLTKAQELGIEIKDE 646


>gi|226327977|ref|ZP_03803495.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198]
 gi|225203681|gb|EEG86035.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198]
          Length = 505

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 203/528 (38%), Positives = 310/528 (58%), Gaps = 42/528 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L   + +H+  Y+    P I D+EYD L     A+   +P+L  S+ P   +  
Sbjct: 6   QQKIDKLRVTLRHHEYLYHVMDAPEIPDAEYDRLMNELKALEAEYPELITSDSPTQRV-- 63

Query: 78  IGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
             G + L+ F +V H IP LSL+  ++      F  R+    + K+   I F  E K+DG
Sbjct: 64  --GALPLTAFEQVRHEIPMLSLDNAFDETSYLAFDKRLRD--RLKNSEEITFCCELKLDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             +++ YE G  V AA RGDG +GE+++  +R I  IP R+   NIP  IE+RGEV++++
Sbjct: 120 LAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLRLYGENIPTRIEIRGEVFMNE 179

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAK 252
             F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+   
Sbjct: 180 KGFEYLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL-PT 238

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             Y+ LQ+ +  G PV++ V+       ++ +Y+ ++ IR  L +DIDG+V KVD+ +LQ
Sbjct: 239 SHYKRLQQFKKWGLPVSDAVKLCTGSKAVLDFYHHVEEIRPNLGFDIDGVVIKVDDIALQ 298

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I++KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++NAT
Sbjct: 299 EELGFVSRAPRWAIAYKFQAQEQMTIIKDVEFQVGRTGAITPVARLEPVQVAGVVVSNAT 358

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L            IR+GD V+++RAG+VIP+VV +I  +R  DAQ   FP+
Sbjct: 359 LHNADEIERL-----------GIRIGDTVVIRRAGDVIPQVVSVIEEKRPADAQEIIFPT 407

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CPICQS    D+    G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G + +D
Sbjct: 408 QCPICQS----DIERIEGEAVA--RCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIID 461

Query: 493 FFFKSEDPAFSIRIPADIF---------TLQRRQQTSTTKIENILGFG 531
              + E     ++ PAD+F          L+R  + S  KI++    G
Sbjct: 462 QLVEKE----YVKTPADLFFRLDEKILSGLERMGEKSAKKIDHCFRQG 505


>gi|25010923|ref|NP_735318.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae NEM316]
 gi|81457056|sp|Q8E5W1|DNLJ_STRA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23095302|emb|CAD46512.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 652

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 236/713 (33%), Positives = 378/713 (53%), Gaps = 70/713 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E    EL SL   ++ +   YY    P + DS+YD L R    +    P+      PN 
Sbjct: 1   MENRMNELVSL---LNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNS 54

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P +++GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E K
Sbjct: 55  PTHRVGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRV-----KAEFPTASYMAELK 109

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  +++ Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+
Sbjct: 110 IDGLSVSLTYVNGILQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYL 167

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F A+N E  A G + +ANPRNAA+G LR+LN   +  R L  F++   + S    +
Sbjct: 168 PKESFEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKE 225

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q ++L+++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q
Sbjct: 226 TQDDVLKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQ 285

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ AT
Sbjct: 286 EELGFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRAT 345

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYI             +DIR+GD V+V +AG++IP V+++++++R+   +    P 
Sbjct: 346 LHNVDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPK 393

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +V   +        A RC   L C  Q  ERL HF SRDA NI G G   ++
Sbjct: 394 LCPSCGSELVHFEDE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVE 446

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNIS 549
             F     A  I   ADI+ L          IE++L   G  + S T +Y +I   +  S
Sbjct: 447 KLFD----AHLIADVADIYRL---------SIEDLLTLDGIKEKSATKIYHAIQSSKENS 493

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            E+ +F LGIRHVG++ +R L + + + +  +Q     IA           +  +G +IA
Sbjct: 494 AEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIA 543

Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRH 664
           +++  F++       V+ LL+E++    +     K VS++ +   L  V TG L+K+ R+
Sbjct: 544 KSLHTFFEKEE----VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRN 599

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +A+E +  LGA V+  +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 600 EAKEKLQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652


>gi|78214056|ref|YP_382835.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9605]
 gi|123729638|sp|Q3AGK2|DNLJ_SYNSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78198515|gb|ABB36280.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9605]
          Length = 680

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 227/705 (32%), Positives = 353/705 (50%), Gaps = 65/705 (9%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P + D+ YD L R    +    P L R   P+ P  ++GG        V H +
Sbjct: 21  AYYVLDAPEMEDTVYDRLYRELLELEQNDPGLQR---PDSPTQRVGGAPAEGFTSVEHRV 77

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             LSL+  +N +DLR +  R+ +   +  D+ +    E KIDG  + + Y  G    AA 
Sbjct: 78  GMLSLDNAFNRDDLRAWHERLLKVLDRPSDSRLPLVGELKIDGNALALSYRNGVLERAAT 137

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDG  GE+++A +R I +IP  L + N PE +EVRGE +I    F A+N E        
Sbjct: 138 RGDGSRGEEITANVRTISSIPLRLQIENPPEWVEVRGEAFIPDATFAAINAEREQRDEAL 197

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNA +G LR+L+P  +  R L+FF + L    +    GQ+  L+ +   GF VN  
Sbjct: 198 FANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPGDAQPPGQWAALEWLNSAGFRVNPN 257

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
                    I  + +  +  R  LPY  DG+V K+D+  LQ + G   ++PRW ++ K+ 
Sbjct: 258 RELCGDLAAIQRFCDHWEQGRHDLPYATDGVVVKLDDLQLQDEAGFTQKAPRWAVALKYP 317

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++A TRLL +  Q+GRTG +TPVA  E V + G  ++ ATLHN D I  L         
Sbjct: 318 AEEAPTRLLRVGAQVGRTGAITPVAEFEAVPLAGTSVSRATLHNADRIAEL--------- 368

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+ +GD ++V++AGE+IP+VV ++   R  DA P   P  CP C S +VR+ +     
Sbjct: 369 --DLHLGDTIVVRKAGEIIPEVVRVLPELRPSDATPVQLPQQCPECGSNLVREGDE---- 422

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             AA RC    +C A     L+H+VS+ A +++GLG + ++      D      + AD++
Sbjct: 423 --AATRCVNS-SCPAILRGGLRHWVSKGALDVDGLGSKLIEQLV---DRGLVGSL-ADLY 475

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L      S  ++      GD S TNL +++   +     R ++ LGIRH+G   A++LA
Sbjct: 476 RLDAALLASLDRM------GDKSATNLVEALKASKQQPWHRQLYGLGIRHIGEVNAKALA 529

Query: 572 KYYLSYQNFAQ---EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
             + S  + A    E    IA  +           +G  I+ ++ ++   P N    + L
Sbjct: 530 AAFFSIDSLATAALEAPEQIAELHG----------IGPEISASLGQWLHTPAN----QQL 575

Query: 629 LKEVSPSIGRHEKNVSSE--------------IENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           L+++  S+G   +  +SE              ++ K LV TGTL  + R +A+  +   G
Sbjct: 576 LQDLR-SVGFSLEASTSEQEAASQAGADADGVLQGKTLVLTGTLPNLSRSEAKALIETAG 634

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             VS  +S+KTD ++ G+  GSKL KA+ LGV +++E     LLQ
Sbjct: 635 GKVSGSVSKKTDYLVAGEAAGSKLTKAESLGVTVLSEADLTALLQ 679


>gi|145220287|ref|YP_001130996.1| DNA ligase, NAD-dependent [Prosthecochloris vibrioformis DSM 265]
 gi|190359271|sp|A4SG85|DNLJ_PROVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145206451|gb|ABP37494.1| DNA ligase, NAD-dependent [Chlorobium phaeovibrioides DSM 265]
          Length = 674

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 223/719 (31%), Positives = 362/719 (50%), Gaps = 58/719 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I+  R E   L  +I  H+  YY  +KP + D ++D L  R   +    P+L     P
Sbjct: 2   VGIDALRSEAERLRSDIERHNHLYYVEAKPELSDYDFDLLLDRLVQLEREHPELV---TP 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      V H  P LSL   ++I ++ +F+ R+ R  + +         E
Sbjct: 59  DSPTQRVGGTITKEFPSVEHREPMLSLANTYSIGEVEEFVGRLNRLLEAEGAQGRDTVAE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIP------EI 184
            K DG  +++ Y  G  +  A RGDG  G+D++  ++ +P+IP R+   + P        
Sbjct: 119 LKFDGVAVSLLYRDGLLIRGATRGDGRRGDDITVNLKTVPSIPLRLGEFDGPFSAGEGRE 178

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFV 240
           +EVRGEV + K DF ALND      R  +ANPRNA +G L+  +  ++ R    ++ ++V
Sbjct: 179 VEVRGEVLMRKEDFEALNDTRPEEDR--FANPRNATAGTLKLQDSREVARRSLWFVAYYV 236

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
            GL            + L+ +   GF   N  R  +    I ++       R  LPY+ D
Sbjct: 237 SGLHDED----TRHVDRLKLLETAGFSTGNQYRLCHGIEEIEAFMQFWDEGRRALPYETD 292

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+++    + LG  ++SPRW I++K+   +A+T L DI  Q+GR G +TPVA LEP
Sbjct: 293 GVVVKLNDVRQWRLLGATSKSPRWAIAYKYPASRATTLLRDIVFQVGRLGTITPVAELEP 352

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V+I G+ +  +TLHN D ++ L            +  GDRV+++++GEVIPKV+ +++ E
Sbjct: 353 VHIAGSTVARSTLHNFDEMRRL-----------GVMPGDRVVIEKSGEVIPKVISVLLEE 401

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R P       P+ CP C + +V+      G++  +  C     C AQ   R+ HF SR+A
Sbjct: 402 RPPGLSAKELPTHCPDCGTPLVQ----PEGEV--SWYCPNEEGCGAQIRGRVLHFASRNA 455

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IE LG+  ++           ++ P D++ L+  +     ++      G+ S  NL  
Sbjct: 456 MDIENLGESLVEQLVAK----GMVKDPGDLYFLREEELAGLERM------GEKSARNLLQ 505

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            + K R  S  R +F LGIRHVG   AR LAK   S +   +            +  L  
Sbjct: 506 GLLKSREQSFARLLFGLGIRHVGRATARELAKACSSIEVLKEA----------SFEELSE 555

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQ 659
           VP +G +IA++I +++  P     +E L +   P         V++  E   +VFTG LQ
Sbjct: 556 VPDIGPVIARSIRDWFLKPAIPSLIEKLRRAGLPLAAEEPGPLVNTNFEGLTVVFTGGLQ 615

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  R  A E V   G +V + +S+KT +++ G   GSKLEKA++LG++I+ E++F  LL
Sbjct: 616 RHDRSSAGELVVARGGIVVSTVSKKTGLVVAGKEAGSKLEKARKLGLRIITEDEFDALL 674


>gi|257463090|ref|ZP_05627491.1| NAD-dependent DNA ligase [Fusobacterium sp. D12]
 gi|317060689|ref|ZP_07925174.1| DNA ligase [Fusobacterium sp. D12]
 gi|313686365|gb|EFS23200.1| DNA ligase [Fusobacterium sp. D12]
          Length = 673

 Score =  353 bits (907), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 233/700 (33%), Positives = 370/700 (52%), Gaps = 56/700 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L++++  + D YY  ++ +I D EYD L +  + +        +  D       +G  + 
Sbjct: 14  LQKKLRSYSDAYYSQNESLISDYEYDMLLKELETLEAEL----QIADETSITQTVGSSLK 69

Query: 84  LSLFKVT-HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN---SIFFTLEPKIDGTMI 139
            + FK T H  P LSL   + I ++  FI R      KK+ N   ++   +E K+DG  I
Sbjct: 70  NTKFKKTAHRTPMLSLSNTYQIGEVEDFILR-----AKKNLNITENLEMEMEIKLDGLSI 124

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ YE+GK   A  RGDG  GEDV+  +  I TIP+ LS  +   IE+RGE+ +   +F 
Sbjct: 125 SVIYEQGKLQRAVTRGDGVIGEDVTENVLQIETIPQELSEKLD--IEIRGEIVLPFTEFE 182

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
            LN   IA G + +ANPRNAASG LR+L+P  +  R+L  + + +    +     Q E +
Sbjct: 183 TLNQMRIAKGEEVFANPRNAASGTLRQLDPQIVKERHLAAYFYFIVNAEQYGIHSQKESI 242

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             +  L  P             + +  +     R  LPY+ DGLV K++  +  ++LG  
Sbjct: 243 SFLEKLSLPTTKICEVFQNIRELEARISHWSVERENLPYETDGLVLKINHIAFWEKLGST 302

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW +++KF  KQ +T+LLDI  Q+GRTG +TPVA LE V + G+ +  A+LHN D 
Sbjct: 303 GKSPRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVKRASLHNYD- 361

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
                   +++R  +DIR+GD V +++A E+IP+V+  +  +R  + +    P  CPIC 
Sbjct: 362 --------EILR--KDIRIGDTVFIEKAAEIIPQVIKAVKQDRTGEEKEIKAPEHCPICH 411

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S     L  K   LV   +C G   C  +    +++FVSRD  NI GLG + L+ F +  
Sbjct: 412 S-----LLEKEEGLVDL-KC-GNKHCPGKIQGEMEYFVSRDGMNISGLGGKILEKFLE-- 462

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                +    DI+ L+ +++    ++E +   G  S+ NL  SI + +N S E+ +++LG
Sbjct: 463 --LHYLEDVGDIYYLKEKKE----ELEQVEKMGKKSIENLLTSIEESKNASYEKVLYALG 516

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  VG   A+ LAK        ++ IN + +   +D   L  +  +GD +A++IVEF+QN
Sbjct: 517 IPFVGKVAAKLLAKE-------SKNINQLQSMTEED---LKEIEGIGDKMARSIVEFFQN 566

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            R    +E L K V       +K+ ++   ++ K  + TGTL    R + QE + +LG  
Sbjct: 567 ERKKELIEKLRK-VGLRFEETDKDTTAAKFLQGKTFLVTGTLSHYTRAELQEEIEKLGGS 625

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFL 715
             + +S+K D +IVG+  GSKLEKA+ LG V I+ EE+FL
Sbjct: 626 NLSSVSKKLDYLIVGEKAGSKLEKAKALGTVTILKEEEFL 665


>gi|328946560|gb|EGG40699.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1087]
          Length = 652

 Score =  353 bits (907), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 229/699 (32%), Positives = 368/699 (52%), Gaps = 57/699 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED--PNGPL 75
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +     S D  P+ P 
Sbjct: 2   KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKY-----STDILPDSPT 56

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +++GG++     K  H  P  SL+  ++ E+L  F  RI     +K+   + +  E KID
Sbjct: 57  HRVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRI-----RKEFPQVSYLCELKID 111

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K
Sbjct: 112 GLSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPK 169

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++     +++ +  Q
Sbjct: 170 ASFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--Q 227

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L K+  L F VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++
Sbjct: 228 EAVLNKLADLDFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEE 287

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLH
Sbjct: 288 LGFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLH 347

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +P   PS C
Sbjct: 348 NVDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHC 395

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  
Sbjct: 396 PSCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKL 448

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F          +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +
Sbjct: 449 FAQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLL 498

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-V 613
           F LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  
Sbjct: 499 FGLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHT 548

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F Q    I   E   + V+      +    + +    +V TG LQK+ R++A+E +  L
Sbjct: 549 YFEQEGSQILLAELQEEGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQSL 608

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           GA VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 609 GANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647


>gi|215412865|ref|ZP_03421575.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis
           94_M4241A]
 gi|298526485|ref|ZP_07013894.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496279|gb|EFI31573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis
           94_M4241A]
          Length = 691

 Score =  353 bits (907), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 225/709 (31%), Positives = 361/709 (50%), Gaps = 49/709 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L     P+ P   +
Sbjct: 15  RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 71

Query: 79  GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG    + F+ V H    LSL+  +  ++L  +  RI+     +  ++  +  E KIDG 
Sbjct: 72  GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +PE++EVRGEV+ 
Sbjct: 128 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 187

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG        
Sbjct: 188 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 247

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             ++    +R  G PV+     A    G+   + Y+ E    R  + ++IDG+V KVDE 
Sbjct: 248 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ + 
Sbjct: 305 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVG 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   IK         R G  + +GD V++++AG+VIP+V+  +V  R    + F 
Sbjct: 365 QATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFI 413

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +  +   K G   A  RC     C  Q  ER+ H  SR+  +IE LG +
Sbjct: 414 MPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYE 468

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                 +++     I    ++F L  R    T       G    +   L  +++K +   
Sbjct: 469 AGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAP 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA  + S    A    + +A           V  VG  IA
Sbjct: 525 LWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQVAA----------VEGVGPTIA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            A+ E++    +   V+         +   +++V   +    +V TG+L    R  A+E 
Sbjct: 575 AAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEA 634

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL
Sbjct: 635 IVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 683


>gi|262037707|ref|ZP_06011149.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264]
 gi|261748179|gb|EEY35576.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264]
          Length = 697

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 224/717 (31%), Positives = 383/717 (53%), Gaps = 62/717 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR----------- 67
           +E   L ++I  ++  YY   +P+I D EYD L ++   I    P+L             
Sbjct: 16  EEYKKLREDIERYNRYYYDEDRPLISDKEYDDLIKKLQKIEEKNPELKNIYTVFSKDNSD 75

Query: 68  ----SEDPN-GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                E+P   P  KIGG  +    KV HS+P LSL   +NI ++  F  R  +      
Sbjct: 76  ISDIEENPEITPTEKIGGTASEKFSKVVHSVPMLSLSNTYNISEIEDFDQRARKITGL-- 133

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D  + + LE K+DG  I++ YEKG F  A  RGDG  GEDV+  +R I ++P+ L  +I 
Sbjct: 134 DKKLEYILELKLDGLSISLIYEKGMFKQAITRGDGQIGEDVTENVREISSVPKKLKDSID 193

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
             +EVRGE+ +  ++F  +N+     G   +ANPRNAA+G +R+L+ + +  R L+ +++
Sbjct: 194 --VEVRGEIVLPISNFNKVNEIREEAGEDVFANPRNAAAGTIRQLDSSIVKDRGLDCYLY 251

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            L        K   E ++ ++ LGF   +   +   F  +     +    R  L Y+ DG
Sbjct: 252 YLVNPERYEIKTHLESMEFIKKLGFKTTDIFEKYTDFKELEKSIEKWHDEREKLDYETDG 311

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           LV KV++FS   +LG   +SPRW I++KF  +Q  T+LLD+  Q+GRTG++TPVA LEPV
Sbjct: 312 LVIKVNDFSYYNELGYTTKSPRWAIAYKFPAEQVKTKLLDVTFQVGRTGVITPVAELEPV 371

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+++  A+LHN D I+            ++I++GD V++++A E+IP+VV+++  +R
Sbjct: 372 TLSGSVVKRASLHNFDEIE-----------RKEIKIGDNVIIEKAAEIIPQVVNVVFEDR 420

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               +    P+ CP+C S +V++     G++  A +C   + C  +    +++FVSRDA 
Sbjct: 421 TGKEREIEKPTNCPVCGSELVKE----EGQV--ALKCLNPV-CPEKVKREIEYFVSRDAM 473

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI GLG++ ++ F +       I+   DI++L+  ++    ++EN+   G  SV NL ++
Sbjct: 474 NISGLGEKIVEKFIE----LGKIKTVVDIYSLKDYRE----ELENLEKMGKKSVDNLINN 525

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I + +N    + ++SLGI  VG   A  L K + + +N            N +   L+++
Sbjct: 526 IEESKNRGFNKVLYSLGIPFVGKFTANLLVKNFKNIENLK----------NSEIEELLQI 575

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSE---IENKKLVFTGT 657
             VG+ +A ++  +  N  N   +  L  + ++ S+   E+ +  E   I+ K  + TG 
Sbjct: 576 KGVGEKVAISVHNYLNNEDNWGKINDLKGRGLNFSLENAEE-IEIEDNPIKGKNFLATGK 634

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           L+K +R + +E +   G    + +S+  D +I G+  GSKLEKA++L V+++ EE+F
Sbjct: 635 LEKYKREEIKEIILSKGGNYLSGVSKNLDFLIAGEKAGSKLEKAEKLNVRVLTEEEF 691


>gi|284032790|ref|YP_003382721.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
 gi|283812083|gb|ADB33922.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
          Length = 709

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 226/714 (31%), Positives = 361/714 (50%), Gaps = 49/714 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+  ++L +EI  H   YY  +   I D+++DAL      I   + +L     P+ P 
Sbjct: 19  EVRERHAALSREIEEHRFRYYMATS-TISDADFDALMHELQGIEQQYQEL---RTPDSPT 74

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G  ++     VTH     SL   ++ E +  +  R+ R    +  +   F  E K+D
Sbjct: 75  QKVGVPISTLFAPVTHPTRMESLGNAFSAEQMEAWAKRLEREVTAQQIHDSGFLCELKVD 134

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  + + YE G+ V  A RGDG +GEDV+  +R I +IP  L+ + +P  +EVRGEVY  
Sbjct: 135 GLALDLVYENGRLVTGATRGDGRTGEDVTLNVRTIDSIPNELAGDDLPSFLEVRGEVYFR 194

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
             DF  LN +++  G+ P++NPRN+A+G LR+ +P     R L F VHGLGK      + 
Sbjct: 195 VEDFEQLNAQLVEAGKDPFSNPRNSAAGSLRQKDPRVSAARPLRFVVHGLGKVEGYRVRR 254

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E  ++++  G PV++  R+  T   +  +       R ++ ++IDG+V KVDE  LQ+
Sbjct: 255 LSEAYEQLKAWGLPVSDRARRVETLAEVNEFIAHYGENRHSVDHEIDGVVVKVDEVDLQR 314

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  + +PRW I++K+  ++ +T+LLDI++ +GRTG +TP  ++EPV + G+ +  ATL
Sbjct: 315 ALGSTSSAPRWAIAYKYPPEEVTTKLLDIEVNVGRTGRVTPYGKMEPVRVAGSTVEFATL 374

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN         + +V R G  + +GD V++++AG+VIP+++  ++  R  +A PF  P+ 
Sbjct: 375 HN---------AREVERKG--VWIGDTVVLRKAGDVIPEILGPVIELRPQEAHPFRMPTQ 423

Query: 434 CPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           CP C +     L P K G +    RC    +C AQ  ERL H   R AF+IE LG +  D
Sbjct: 424 CPSCGT----TLRPMKEGDVDI--RCPNAQSCPAQLRERLFHLAGRSAFDIEVLGFKAAD 477

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     I    D+F L  +    +       G    +   L  ++   +   L R
Sbjct: 478 ALISGE----LITDEGDLFDLTEQDLGRSPFFTTKAGALSANAKRLLANLETAKTQPLAR 533

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +L IRHVG            +      +I+ I A   D+   L ++  VG  IA A+
Sbjct: 534 GLVALSIRHVG-------PTAAAALAAAYDDIDAIQAAGEDE---LAQIEGVGPTIAHAV 583

Query: 613 VEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +E++Q        R   A    L++      R    V   +    +V TGT++   R +A
Sbjct: 584 IEWFQVDWHQQIVRKWKAAGVQLRQE-----RTGPTVEQTLTGLSVVVTGTVEGFSRDEA 638

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            E +   G   +  +S+KT  ++VGD+PGSK +KA QLGV I++   F  LL Q
Sbjct: 639 TEAIVSRGGKAAGSVSKKTSFVVVGDSPGSKYDKAVQLGVPILDAAGFEVLLDQ 692


>gi|303232470|ref|ZP_07319159.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4]
 gi|302481435|gb|EFL44506.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4]
          Length = 836

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 254/754 (33%), Positives = 378/754 (50%), Gaps = 90/754 (11%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + ++YH   YY    P+I D+++DA  +   A+  A P+LA    P     ++GG ++
Sbjct: 103 LRRLLTYHAWRYYALDDPLISDAQFDAYLQELIALEQAHPELA---SPTSYTQRVGGFVS 159

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITR----IYRFWQKKDDNSI------------- 126
                 TH+    S++   N+++L  ++ R    + +  +  +D S              
Sbjct: 160 RQFAACTHAKRMYSIDDAMNLDELDLWLERTCDALAKLAESYEDASAPVPEGTSAAAQAA 219

Query: 127 --------------FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172
                          FT E KIDG  I + YE G+FV AA RGDG  GEDVSA +  I  
Sbjct: 220 ADARARMRKALLSPTFTCELKIDGLGIALTYESGQFVRAATRGDGAVGEDVSANVLTIAD 279

Query: 173 IPRVL---------SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGI 223
           +PR L         +  +   +EVRGEVY+ K  F+ LN+E  A G   +ANPRNAA+G 
Sbjct: 280 VPRALKPQGLAHVRNSGLNYALEVRGEVYMPKQSFVRLNEEADAQGTATFANPRNAAAGS 339

Query: 224 LRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281
           LR+ NP +IT  R L  F++ +     +    Q+E L  +   GF  N      ++   +
Sbjct: 340 LRQKNP-EITAHRDLKTFMYAVATRDGLDVHTQHEFLAWLASCGFSTNTKFATCHSAREV 398

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
             +       RS L YDIDG+V KVD+ + Q  +G  AR+PRW I++KF  +Q  T L D
Sbjct: 399 HDFCKRALEHRSELDYDIDGVVVKVDDMAAQDAMGFTARAPRWAIAYKFPPEQKQTLLRD 458

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           I IQ+GRTG+LTPVA  EPV + G+ I  ATLHN D         +V R  RD+RVGD +
Sbjct: 459 ICIQVGRTGVLTPVAEFEPVLVAGSTIARATLHNLD---------EVTR--RDVRVGDTI 507

Query: 402 LVKRAGEVIPKVVDIIVN----ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457
           +V +AG+VIP+VV  ++     E H     +  P  CP C S VV++     G++  A R
Sbjct: 508 IVHKAGDVIPEVVGPVLEGAMAEAHAARPRWQMPRVCPSCGSSVVQE----DGEV--AFR 561

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ-LDFFFKS--EDPA-FSIRIPADIFT- 512
           C   + C AQ  ERL H+VSR A +I+GLG++  +    +S   D A F  R+  D+   
Sbjct: 562 CV-SIDCPAQAKERLVHWVSRKAMDIDGLGEELIIKLIGRSLVRDVADFYDRLTCDMIAK 620

Query: 513 --LQRRQQTST---TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
               R  +TST    + + IL  G    T +Y  I   +   L R +F LGIRHVG  +A
Sbjct: 621 LDTGRYYKTSTGAHNEGDPIL-VGSTVATKIYAQIEASKQAGLARVLFGLGIRHVGQNVA 679

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
             +A Y       A  ++ ++A    +  S   +  VG  IA+++ +F    +N   +  
Sbjct: 680 GLIAAY-------AGSLSQLMAAQPTEIAS---IDGVGPKIAESVHKFLSIEQNRTVITR 729

Query: 628 LLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           L    V  S        +  +     V TGTL  + R  A + +  LGA VS  +S+KT 
Sbjct: 730 LAAAGVRLSEREDAAPTAQTLHGYTFVLTGTLDGMARTDAADALRALGAKVSGSVSKKTS 789

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +I G+N GSKL++A +LGV ++ + +   +L+Q
Sbjct: 790 FVIAGENAGSKLDRAHELGVCVIGKPELDEILRQ 823


>gi|221195651|ref|ZP_03568705.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626]
 gi|221184417|gb|EEE16810.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626]
          Length = 706

 Score =  353 bits (905), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 232/702 (33%), Positives = 368/702 (52%), Gaps = 57/702 (8%)

Query: 41  PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100
           P + D+E+D L      I  A P+L     P     ++GG ++     VTH+    S++ 
Sbjct: 32  PELTDAEFDRLLVELQGIEAAHPELIV---PESYTQRVGGYVSEQFEPVTHAARMYSIDD 88

Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160
             N+E+L  ++ R          + + +T E KIDG  I + Y +G+ V  A RGDG +G
Sbjct: 89  AMNLEELDAWLARTDEALGASKTHPVAYTCELKIDGLGIALTYTEGQLVRGATRGDGATG 148

Query: 161 EDVSACIRAIPTIPRVLS-LNIPEI--------IEVRGEVYISKNDFLALNDEMIAVGRK 211
           E+V+A    I  IPR L+   +  +        +EVRGEVY+ K+ F+ LN++  A G++
Sbjct: 149 ENVTANALTIKDIPRALAPAGLARLRDEGAHLSLEVRGEVYMPKHSFVRLNEDADAAGKQ 208

Query: 212 PYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
           P+ANPRNAA+G LR+ +P     R L  F++ +   + +    Q++ L  +R  GF VN 
Sbjct: 209 PFANPRNAAAGSLRQKDPKVTAHRDLETFMYAIADEAPLQVDSQWKFLSWLRDCGFSVNT 268

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
              +  +   +  +       RS L YDIDG+V KVD F+ Q++LG  +R+PRW I+ KF
Sbjct: 269 HAARCVSAQEVHDFCKRALEERSELDYDIDGVVVKVDSFAYQEELGFTSRAPRWAIAFKF 328

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
             ++  T L +I IQ+GRTG+LTPVA  +PV + G+ I  ATLHN D         +V R
Sbjct: 329 PPEEKQTVLREIRIQVGRTGVLTPVAEFDPVVVAGSTIARATLHNID---------EVHR 379

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
             +++R GD ++V +AG+VIP+VV  ++ +R  +++PF  P+ CP C S VV++     G
Sbjct: 380 --KNVREGDTIIVHKAGDVIPEVVRPVLEKRPLNSKPFMMPTVCPSCGSPVVKE----EG 433

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK----SEDPAFSIRI 506
           ++  A+RC   + C AQ  ERL H+ SR A +I+GLG++ ++        S+   F  ++
Sbjct: 434 EV--AYRCV-SIDCPAQATERLIHWGSRKAMDIDGLGEELVNKLVANGILSDVADFYDKL 490

Query: 507 P-ADIFTLQRRQQTSTTKIENILG----FGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +DI  L   +   T    ++ G     G      +   I + +   L R +F +GIRH
Sbjct: 491 TVSDIAELPTGRFYETDTDGHLSGDPIPTGLTIAEKIMTQIQESKTRGLARVLFGIGIRH 550

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VGA +A  LA+Y+ S Q         +A           +  VG  +A++I EF+  P N
Sbjct: 551 VGANMAALLAQYFHSIQELQLATEEQMA----------AISGVGPKMAKSIKEFFLIPEN 600

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           I  +E L       +   E + +S+    +     V TGTL+   R +A   + + GA V
Sbjct: 601 IAVLERLR---VAGVVMEEADATSDKPQTLSGLTFVLTGTLEHYTRDEAGALLKERGAKV 657

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S  +S+KT  ++ G+  GSKL KA  LGV +++E     +L+
Sbjct: 658 SGSVSKKTSFVVAGEAAGSKLTKAVSLGVPVLSEADLERILE 699


>gi|57241999|ref|ZP_00369939.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195]
 gi|57017191|gb|EAL53972.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195]
          Length = 644

 Score =  353 bits (905), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 233/684 (34%), Positives = 363/684 (53%), Gaps = 66/684 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY+  +P+  D EYD L R         P L     P+ P  KI   +     K  H   
Sbjct: 18  YYEEDEPLASDEEYDRLIREIKVFEKENPSLI---SPDSPTQKIAPTIQSKFKKSRH--- 71

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
              L K+W++ED+  F     R W K+      F +EPK DG  + + Y+KG+ V AA R
Sbjct: 72  ---LSKMWSMEDV--FDEEELRAWAKRARCEDGFFIEPKFDGASLNLLYQKGRLVSAATR 126

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GEDV+  ++ I  IP+++  N    IE+RGEV I K DF  LN++        +A
Sbjct: 127 GDGEIGEDVTLNVKEIANIPQII--NYEGEIEIRGEVVILKEDFERLNEKRAKENLSLFA 184

Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           NPRNAASG LR+L+ T IT  R L F+  G+GK +  FAK   E++  +R LGF  +  V
Sbjct: 185 NPRNAASGSLRQLD-TQITKERNLKFYPWGVGKHTLSFAK-HSELMCFVRELGFLKDEFV 242

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R       ++++Y E+ S+R   P  +DG+V +VD+ +L K+LG   + P++M + KF  
Sbjct: 243 RVCKNLDEVLTHYKELLSLRDLKPMMMDGMVVRVDDIALCKELGYTIKYPKFMAAFKFPA 302

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            + STRL+ + +Q+GR+G++TPVA LEPVN+ G ++ +A+LHN D I+ L          
Sbjct: 303 LEKSTRLVGVSLQVGRSGVITPVAVLEPVNLDGVVVKSASLHNFDEIERL---------- 352

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
            ++R+ D V V R+G+VIPK+  +  + R  +A     P  CP+C+S ++ +     G L
Sbjct: 353 -NLRLNDFVSVIRSGDVIPKITKVFKDRRGENALKIERPKLCPVCESELLDE-----GAL 406

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           +        L C A+ +  + +FVS+   NI+GLG+  ++  ++ +     I     IF 
Sbjct: 407 IKCQ----NLDCKARLVNSIIYFVSKKCLNIDGLGESIVELLYEKQ----KITSIESIFR 458

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L+ +        E + GF +  +T L ++I   +   L RFI +LGI H+G   A+ LA 
Sbjct: 459 LKFQD------FEGLEGFKEKKITKLLNAIESAKICPLYRFITALGIEHIGEVAAKKLAL 512

Query: 573 YYLS--YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
            +    YQ   +E  N+                 G+ +A ++VEF +   N   +EA  K
Sbjct: 513 SFDKEWYQKSFEEYKNLEGF--------------GEQMALSLVEFTR--VNQARIEAFYK 556

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++    + E +  S    K  V TGTL +  R + +  + +LG  VS+ +S+KTD ++ 
Sbjct: 557 LLNLENEKQEISTQSPFYEKTFVITGTLSR-PRDEFKALIERLGGKVSSSVSKKTDFVLF 615

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQF 714
           G+  GSKLEKA++LGVK ++E QF
Sbjct: 616 GEEAGSKLEKARELGVKCIDEIQF 639


>gi|227893041|ref|ZP_04010846.1| DNA ligase [Lactobacillus ultunensis DSM 16047]
 gi|227865154|gb|EEJ72575.1| DNA ligase [Lactobacillus ultunensis DSM 16047]
          Length = 667

 Score =  353 bits (905), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 222/710 (31%), Positives = 383/710 (53%), Gaps = 62/710 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++++A+KE +SL  +++   D YY    P + D+ YD    R   +   FP++     P
Sbjct: 4   ITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELERQFPEIVT---P 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG+++    KV H IP LS+  +++ ++L++F  R+    QK   + + + +E
Sbjct: 61  DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKDELKEFDQRM----QKLVGHPVEYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GK V A+ RG+G+ GEDV+A  R I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANARYIADIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN+E    G   + NPRNAA+G LR+L+P  +T  R L+ F++      E 
Sbjct: 175 YMGKKAFAKLNEEREEQGLTVFVNPRNAAAGSLRQLDPK-VTKRRQLSTFIYTWVNPPEG 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   R+  T   I ++ +E  + R++L Y IDG+V K+D+ 
Sbjct: 234 II-SQHQAIDRMHELGFHTNETGRKLATLDEIFAFIDEYTAKRNSLTYGIDGIVLKIDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  + 
Sbjct: 293 NIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVA 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D++ + 
Sbjct: 353 RASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSEVYH 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG +
Sbjct: 402 IPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPK 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I+  +  S
Sbjct: 455 IVKQLI-AKDLVHNV---ADLYHL------NADDLAQLDHFKEKSINNLLTAIDNSKKNS 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E  I  LGI HVGA+ AR +A+ +       + +  I++    D  S   +  +G  IA
Sbjct: 505 VELLITGLGIDHVGAKAARLIAQKF-------KNLEKIMSLGVQDIAS---IDTIGMTIA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQKIQ 662
           +++  ++  P      + L++E+  S      +G  E+    +  ++K +V TG L+   
Sbjct: 555 ESMTTYFAQPE----AQKLVEELRESGLNMDYLGEDEEVAPDNPFKDKTVVLTGKLEHYT 610

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           R +  + +  LGA V+  +S +TD +I G + GSK  KAQQLGV ++ EE
Sbjct: 611 RSEFTKKLQALGAKVTGSVSHRTDYVIYGKDAGSKYNKAQQLGVPLLTEE 660


>gi|261366975|ref|ZP_05979858.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176]
 gi|282571093|gb|EFB76628.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176]
          Length = 661

 Score =  352 bits (904), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 233/710 (32%), Positives = 364/710 (51%), Gaps = 59/710 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQA+K    L   I  ++  YY    P + D EYDAL R   AI   FPDL     P  P
Sbjct: 4   EQAQKRAEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKAIETEFPDLVT---PESP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG  +    KVTH++   SL+  +++E+LR F +R+     K +     + +E KI
Sbjct: 61  TQHVGGTASSKFTKVTHAVKMESLQDAFSLEELRDFDSRVREAGIKPE-----YVVEAKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ Y  G+ V  + RGDG  GEDV+  +  I  IP  L  N P  +EVRGEVY+ 
Sbjct: 116 DGLSVSLEYRNGRLVRGSTRGDGMVGEDVTENLATIRDIPLQLE-NAPAFLEVRGEVYMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252
              F  L ++     + P+ NPRNAA+G LR+ N   IT  R L+ FV  L +       
Sbjct: 175 HAAFFKLKEQQELEDKTPFKNPRNAAAGSLRQKN-AKITAERGLSIFVFNLQQCEGRSFA 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI---RSTLPYDIDGLVYKVDEF 309
             +E L  ++ LGFPV+    + + F  I     E+++I   R TL +DIDG V KV++ 
Sbjct: 234 THHETLDYIKSLGFPVSP---RYSVFSSIEDAIREIQTIGELRGTLEFDIDGAVIKVNDL 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + ++ LG   + PRW I+ K+  +   + + DI++ +GRTG+LTP A  +PV + G  ++
Sbjct: 291 AARRVLGSTNKFPRWAIAFKYPPEVKESVVRDIEVTVGRTGVLTPTAVFDPVFLAGTSVS 350

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D I  L            + +GD + V++AG++IP+V  I V+   PD++PF 
Sbjct: 351 RASLHNGDIISSL-----------GVGIGDTIQVRKAGDIIPEV--IAVSAHGPDSKPFM 397

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + VV  L  +T     A RC     C AQ L  L HF SRDA  I+GLG +
Sbjct: 398 MPTVCPSCGAPVVH-LQDET-----ALRCVNP-ECPAQSLRNLIHFASRDAMAIDGLG-E 449

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +      ++   ++   AD+++L   Q  +  K      F   S  NL  +I   +  +
Sbjct: 450 AVAIQLTEKNLVHTV---ADLYSLNEEQLLTLDK------FKKKSAQNLLTAIEHSKTNN 500

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L++ +F LGIR++G + A  LA+++ S +          A  +     +  V   G ++A
Sbjct: 501 LDKLLFGLGIRNIGDKAAALLAEHFGSME----------AIRSAGVEQMCEVDGFGAVMA 550

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q++ EF+ +      + A L++   ++        + +  K LV TGTL  + R +A+  
Sbjct: 551 QSVREFF-DKEGTSDLLARLEKAGVNMQWTGTPKGTALAGKTLVVTGTLPTLSRQEAEAL 609

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + Q G   S  +S+KT  ++ G   GSKL KAQ LG+ +++E     L+Q
Sbjct: 610 IVQNGGKASGSVSKKTSYVVAGTAAGSKLTKAQALGIPVIDEAGLYALIQ 659


>gi|207723346|ref|YP_002253745.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial
           sequence n terminus) protein [Ralstonia solanacearum
           MolK2]
 gi|206588545|emb|CAQ35508.1| probable dna ligase (polydeoxyribonucleotide synthase [nad+])
           (partial sequence n terminus) protein [Ralstonia
           solanacearum MolK2]
          Length = 568

 Score =  352 bits (904), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 207/557 (37%), Positives = 304/557 (54%), Gaps = 51/557 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY   +P + D+EYD L R  +A+    P+L     P+ P  ++GG +      V H +P
Sbjct: 31  YYVLDQPSVPDAEYDRLYRALEALEAEHPEL---RTPDSPTLRVGGAVLPEFAPVRHVVP 87

Query: 95  TLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
            LS+  E     +    F   + R     + D  + +  E K DG  I +RYE+G  V A
Sbjct: 88  MLSIRTETDTTADGALAFDASVRRELGLAESDPPVEYAAELKFDGLAINLRYEQGFLVQA 147

Query: 152 ALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
           A RGDG +GEDV+  IR I  IP   R +   +P+++EVRGEVY+ ++DF  LN      
Sbjct: 148 ATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLNARQRER 207

Query: 209 GRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKGQYEMLQKMRCLG 265
           G K + NPRN A+G +R+L+P     R L+FF +GLG+ +      +    ML  +  LG
Sbjct: 208 GEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPETHSGMLDALVALG 267

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           FPV+          G+V ++  + + R +LP+DIDG+VYKV+  +LQ++LG R R PRW 
Sbjct: 268 FPVSKERAAVMGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNALALQRELGFRTREPRWA 327

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNATLHNED ++     
Sbjct: 328 VAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEVR----- 382

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPDAQPFSF 430
                  +D+RVGD V+V+RAG+VIP+VV +++  R                P + PF  
Sbjct: 383 ------RKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPVQQPKSPPFEL 436

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S VVR+     G+ VA  RC+GGL CSAQ+ E ++HF  R   +IEGLG++ 
Sbjct: 437 PKSCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERY 490

Query: 491 LDFFFKSE---DPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDVSVT---NLYDSIN 543
           +D   + E     A   R+  D F  ++RR           +  G ++     NL   I 
Sbjct: 491 IDNLVELEYVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAENLLAGIQ 550

Query: 544 KRRNISLERFIFSLGIR 560
             +   L RF+F+LGIR
Sbjct: 551 ASKTPPLARFLFALGIR 567


>gi|323126984|gb|ADX24281.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 652

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 226/698 (32%), Positives = 367/698 (52%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L + ++ +   YY    P + DSEYD L R    + + +P+    + P      
Sbjct: 2   KKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQDSPT---QN 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+     K +     +  E KIDG 
Sbjct: 59  VGGTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRV-----KSEFPDATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G+    A RGDG  GE+++  ++ I  IP+VL    P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGQLQVGATRGDGSVGENITENLKQIKDIPQVLPQ--PLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+E    G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q  
Sbjct: 172 FKAINEERQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLYQ--EASPTTRSQQDH 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +  LGF VN     +++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLKALADLGFSVNQRHHLSSSMDEIWDFIQTVEAERDQLAYDIDGIVIKVNNLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L+PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLKPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   PS CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVSDKRQEQV-PMWIPSQCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS +V   +        A RC   L C +     L+HF SR+A NI GLG   ++  F 
Sbjct: 398 CQSDLVHFEDE------VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLFL 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +        + ++ G  + S   L  +I   ++ S E+ +F 
Sbjct: 451 ----AGLVHDVADIYKLTKED------LLHLDGIKEKSAEKLLAAIETSKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+GA+ +R + +          +I +++    +D   +  +  +G +IA+++V+++
Sbjct: 501 LGIRHIGAKASRLILET-------CGDIEHLLTVREED---IATIDGLGMVIAKSLVQYF 550

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIE--NKKLVFTGTLQKIQRHKAQEYVTQLG 674
           Q    I  VE  LK    ++    + + S  E     +V TG L+K+ R+ A+  +  LG
Sbjct: 551 QQDSAILLVEE-LKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A V+  +S+KTD++I G + GSKLEKAQ LG++I  EE
Sbjct: 610 AKVTGSVSKKTDLVIAGSDAGSKLEKAQALGIRIEGEE 647


>gi|326330727|ref|ZP_08197031.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1]
 gi|325951568|gb|EGD43604.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1]
          Length = 702

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 234/734 (31%), Positives = 374/734 (50%), Gaps = 64/734 (8%)

Query: 16  QARKELSSLEQEISYH-DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +A  E  S  QE++   +D  Y+Y     P + D+++D   RR + +   FP+L     P
Sbjct: 8   EAGPEQKSEHQELAEQIEDARYRYYVLDDPTLSDADFDQKWRRINELEEQFPEL---RTP 64

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG  +     V H     SL+ +++ E+L  +  RI     K          E
Sbjct: 65  DSPTQKVGGTFSTEFTAVDHLQRMESLDNVFSFEELAGWHARI----AKDGAGQAELLCE 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEV 187
            K+DG  I + YEKG+ V A  RGDG +GEDV+  +R I +IP  L+      +P+++EV
Sbjct: 121 LKVDGLAINLLYEKGRLVRALTRGDGRTGEDVTPNVRTIKSIPHRLTGTDEFPVPDLVEV 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGEV++S   F  LN  ++  G+  +ANPRN+A+G LR+ +P    TR L    HG+G  
Sbjct: 181 RGEVFLSIEVFDKLNASLVDAGKPMFANPRNSAAGSLRQKDPRVTATRELGMVCHGIGAR 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLV 303
                  Q      ++  G P +N V+   T   +   +SY+ E +       ++IDG+V
Sbjct: 241 EGFQPVAQSHAYDALKAWGLPTSNRVKVLKTLQEVEEFISYFGEHR--HDVTEHEIDGVV 298

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD+ SLQ++LG  +R+PRW I++K+  ++ + +LL ID+ +GRTG +TP   +EP  +
Sbjct: 299 IKVDDISLQRRLGSTSRAPRWAIAYKYPPEEVNAKLLAIDVGVGRTGRVTPFGVMEPTKV 358

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  ATLHN   +K            +D+R GD +++++AG+VIP+++  ++  R P
Sbjct: 359 AGSTVERATLHNAHEVK-----------RKDVRPGDTIILRKAGDVIPEILGPVLPLR-P 406

Query: 424 DAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           +  P +  P+ CP C + +      K G      RC     C AQ  ER+     R AF+
Sbjct: 407 EGLPEWVMPTECPACGTTLAEQ---KEGD--KDLRCPNHRGCPAQVRERVFFASGRGAFD 461

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-------KIENILGFGD--- 532
           IEG+G +  D    +      I    DIF L      +TT       K E   G GD   
Sbjct: 462 IEGMGYEAADALLAA----EVITNEGDIFDLDEAGLATTTFFTRAAKKAEKEAGAGDRVL 517

Query: 533 -VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
             +   L  ++ +R+++ L R + +L IRHVG   AR+LA  + S       ++ I A +
Sbjct: 518 NANALGLLRNLEERKHVPLWRVLVALSIRHVGPSAARALATEFGS-------LDAIWAAS 570

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
            ++   L     VG IIA+AIVE+ Q   +   V+             +++V+  +E   
Sbjct: 571 QEE---LAATEGVGGIIAEAIVEWRQVDWHQEIVDKWRAAGVSLADERDESVARTLEGLT 627

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +V TG+L+   R  A+E +   G   +  +S+KTD ++VGDN GSK  KA++LG+ I++E
Sbjct: 628 VVVTGSLEDFSRDGAKEAIISRGGKAAGSVSKKTDYVVVGDNAGSKAAKAEELGLPILDE 687

Query: 712 EQFLFLLQQYNTTL 725
             F  LL+   T L
Sbjct: 688 AAFKVLLEDGPTGL 701


>gi|260655066|ref|ZP_05860554.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1]
 gi|260630177|gb|EEX48371.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1]
          Length = 670

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 235/721 (32%), Positives = 368/721 (51%), Gaps = 67/721 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R     L + ++ +   YY    P++ D E+D L     +I    PD  R   P+ P  +
Sbjct: 4   RARYDELVETVNENSYLYYVKDAPVLSDFEWDQLMNELLSIEREHPDWIR---PDSPSRR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG    +  KVTH IP LSLE +++ E+L  ++       +K+  +   +  E KIDG 
Sbjct: 61  VGGTALDAFEKVTHQIPMLSLEDVFSPEELTGWLAHA----EKEIGSQSEWCCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y+ G FV  A RGDGH GEDV+A +R + ++P  L  ++P ++EVRGEVY+ K  
Sbjct: 117 AISLIYQDGVFVRGATRGDGHVGEDVTANLRTVRSLPLKLRGSVPGLLEVRGEVYMDKTS 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN      G   +ANPRN A+G LR+L+PT  + R L  F++ +    E   + Q +
Sbjct: 177 FEALNRRREEAGEALFANPRNVAAGSLRQLDPTVTSQRNLQVFLYYVMNPHERGFETQSD 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  M  +G PV    R +        +  E +  R  L Y  DG+V+K ++      L 
Sbjct: 237 CLNWMASVGLPVQPAWRVSRGTAEAAQFVEEWRDRRFDLSYGTDGVVFKANKLFDWDLLS 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW ++ K+  ++ +  L  ID+ +GRTG++TPVA  +PV + G  ++ A+LHN 
Sbjct: 297 ATSRTPRWAVAFKYPPEEKTVHLDAIDVSVGRTGVITPVAIFQPVVLSGTNVSRASLHN- 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                    G++ R  +DIRVGD + V++AGE+IP+VV    + R     PF  P  CP 
Sbjct: 356 --------GGEIAR--KDIRVGDWITVRKAGEIIPEVVKSDASRRDGTQTPFIMPERCPS 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---QQLDF 493
           C   VV+      G+  AA RC   ++C AQ L RL HF SR A ++ GLG+   QQL  
Sbjct: 406 CGHPVVQ----LQGE--AALRCQ-NVSCPAQMLARLVHFASRGAMDVRGLGEALAQQL-- 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                    S R+   + TL    + +  ++  +   G+ S ++L  ++   +   L+R 
Sbjct: 457 --------LSSRL---VVTLADLYRLTADQLAGLERMGEKSASSLVQALEGAKKRPLDRL 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +LGI  VG   AR+L   + S +   Q   +           L +V  +G  IA ++ 
Sbjct: 506 LVALGIPLVGPSAARALVGRFGSLEAIGQATED----------ELSKVEGIGPAIAGSVA 555

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---------IENKKLVFTGTLQKIQRH 664
            +  +  N     ALL++ S S+G  E   S E            + +VFTG +  + R 
Sbjct: 556 SWLADSAN----RALLQDFS-SLG-LEACTSREPTQPAQPGPWTGQVIVFTGEMASMPRS 609

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A E    LGA V+  +S KT +++ G+  GSKL+KA  LG+ +++EE+FL  LQ   +T
Sbjct: 610 QASELARGLGAKVTGSVSSKTTLLVAGEAAGSKLDKANSLGIPVISEEEFLSRLQAAKST 669

Query: 725 L 725
           L
Sbjct: 670 L 670


>gi|298385661|ref|ZP_06995219.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14]
 gi|298261802|gb|EFI04668.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14]
          Length = 666

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 233/713 (32%), Positives = 369/713 (51%), Gaps = 63/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P  +
Sbjct: 4   KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G +++ +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDISKNFTQVAHKYPMLSLANTYSESEVTDFYERV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ +   
Sbjct: 117 SISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N + + +R L+ +++ L     +   G Y
Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK L
Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINHWDVERKNLPVATDGIVLKVNSLRQQKNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+ V + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDAVQLSGTIVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429
            D I+GL           D+ +GD V V++ GE+IPK+  +       DA+ F       
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F + CP C S+++R      G+  AAH C    AC  Q   R++HF+SR A NI+GLG +
Sbjct: 400 FITNCPECGSKLIR----YEGE--AAHYCPNETACPPQIKGRIEHFISRKAMNIDGLGPE 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F++       I   AD++ L+         I+ +   G+ S  N+   I + + + 
Sbjct: 454 TVDMFYR----LGLIHNTADLYELK------ADDIKGLDRMGEKSAENIITGIEQSKTVP 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER IF+LGIR VG  +A+ +AK +       Q           D   LI +  +G+ IA
Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFGDIDELQQA----------DLEKLISIDEIGEKIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666
           ++I+ ++ N  N   V   LKE    + R E+++S    ++  + +V +G      R + 
Sbjct: 554 RSILLYFSNESNRELV-GRLKEAGLQLYRTEEDMSGYTDKLAGQSIVISGVFTHHSRDEY 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           ++ + + G      +S KT  I+ GDN G +KLEKA++LGV I++E++FL L+
Sbjct: 613 KDLIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGVTILSEDEFLKLI 665


>gi|222152820|ref|YP_002561997.1| NAD-dependent DNA ligase LigA [Streptococcus uberis 0140J]
 gi|254781430|sp|B9DRS2|DNLJ_STRU0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222113633|emb|CAR41520.1| DNA ligase [Streptococcus uberis 0140J]
          Length = 652

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 229/707 (32%), Positives = 375/707 (53%), Gaps = 58/707 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E+  +EL+SL   ++ +   YY    P + D EYD L      +   +P+  + + P+ 
Sbjct: 1   MEKRIRELTSL---LNQYRQEYYTNDNPSVSDQEYDKLYHELIDLEKEYPEYIQKDSPS- 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
               +GG +     K  H  P  SL+  ++ E+L  F  R+   + K +     +  E K
Sbjct: 57  --QAVGGLILSGFEKYQHPFPLYSLQDAFSKEELEAFDRRVKSEFPKAE-----YIAELK 109

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++ YE G+ V  A RGDG  GE+++  I+ I  IP  L  +I   I VRGE Y+
Sbjct: 110 IDGLSISLSYESGRLVTGATRGDGSVGENITENIKKIKDIPHQLKDDI--TITVRGEAYM 167

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAK 252
           S++ F  +N E    G   +ANPRNAA+G LR+L+ + + R  L  F++     S+  A+
Sbjct: 168 SRSSFQKINLERQENGETEFANPRNAAAGTLRQLDTSIVARRELASFLYQEASPSQ--AQ 225

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q ++L+ +  LGF VN     +++   I S+  +++  R  L YDIDG+V KV+  ++Q
Sbjct: 226 NQEDVLENLEALGFSVNKKRLISSSMEDIWSFITQVEDERDNLSYDIDGIVIKVNNLAMQ 285

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   ++PRW I++KF  ++    +L +D  IGRTG++TP A L P+ + G  ++ AT
Sbjct: 286 EELGFTIKAPRWAIAYKFPAEEKEAEILSVDWTIGRTGVVTPTANLTPIQLAGTTVSRAT 345

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFP 431
           LHN DYI             +DIR+GD V+V +AG++IP V+ ++  +R  D Q P   P
Sbjct: 346 LHNVDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVDTKR--DQQLPMPIP 392

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP CQS +V  L  +      A RC   L C +     L+HF SR+A NI GLG   +
Sbjct: 393 KVCPSCQSDLVH-LEAEV-----ALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAIV 445

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F ++     I   ADI+      Q S   +  + G  + S   L D+I   ++ S +
Sbjct: 446 EKLFSAQ----LIHDVADIY------QLSLDSLLTLEGIKEKSAQKLLDAIQSSKSNSAD 495

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIRHVGA+ +R L + + S +N  +  +  IA          ++  +G +IA +
Sbjct: 496 KLLFGLGIRHVGAKASRLLLETFGSVENLMKADDQSIA----------QIDGLGHVIANS 545

Query: 612 IVEFYQNPRNICAV-EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I  ++        + E   K V+      + + S+++    +V TG L+++ R +A+E +
Sbjct: 546 IKNYFAKEEAKQLIFELKDKGVNLDYLGKKVDTSAQLFGLTVVLTGKLEEMTRQEAKEKL 605

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             +GA V+  +S+KTD++I G + GSKL+KA+ LG+ + +E   L L
Sbjct: 606 ENMGAKVTGSVSKKTDLVIAGSDAGSKLDKARSLGIDVKDENWLLQL 652


>gi|333030674|ref|ZP_08458735.1| DNA ligase [Bacteroides coprosuis DSM 18011]
 gi|332741271|gb|EGJ71753.1| DNA ligase [Bacteroides coprosuis DSM 18011]
          Length = 667

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 231/714 (32%), Positives = 378/714 (52%), Gaps = 62/714 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A+  +  L + +   +  YY  ++P I D E+D L +    +    P   + +DPN P +
Sbjct: 3   AKDRIDELRKYLHQQNYKYYILNQPEISDKEFDDLLKELQDLEKKNP---QYDDPNSPTH 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPKI 134
           +IG +++    +  H  P LSL   ++  ++ +F  R+     KK   S  F L  E K 
Sbjct: 60  RIGSDIDKRFTQKEHKYPMLSLANTYSETEVAEFYERV-----KKALGSQPFELCCELKF 114

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DGT I++ Y+ GK V A  RGDG  G+ V+  ++ I TIP VL+  N P+  E+RGE+ +
Sbjct: 115 DGTSISLTYQHGKLVEAVTRGDGTRGDMVTDNVKTIRTIPLVLNGDNYPDEFEIRGEILM 174

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
               F  LN E  A     +ANPRNAASG L+  N + + +R L+ +++ L   +  +  
Sbjct: 175 PWVVFEELNAEKEAREEPLFANPRNAASGTLKLQNSSVVASRKLDAYLYYLLGENLPY-D 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           G YE L++    GF +++ +R+  T   +  +     + R  LP   DG+V KV+  + Q
Sbjct: 234 GHYENLEEASKWGFKISSEMRKCKTLQEVYDFIRYWDTARKDLPVATDGIVIKVNSIAQQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A+SPRW I++KF  ++A TRL ++  Q+GRTG +TPVA L+ V + G ++  A+
Sbjct: 294 EGLGYTAKSPRWAIAYKFQAEEARTRLNEVTYQVGRTGAITPVANLDAVQLSGTVVRRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP-FSFP 431
           LHNED I+GL           D+ +GD V V++ GE+IPK+  +  + R     P   F 
Sbjct: 354 LHNEDIIRGL-----------DLHIGDMVYVEKGGEIIPKITAVDTDARDEHLGPKVEFI 402

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +VR      G+  AAH C     C  Q   R+ HF+SR A NI+GLG + +
Sbjct: 403 KKCPECGTDLVR----YEGE--AAHYCPNETGCPTQIKGRIVHFISRRAMNIDGLGPETV 456

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNI 548
           D F++       +   AD++ L + Q         ILG    GD S  N+   I + + +
Sbjct: 457 DLFYRE----GLLHNAADLYQLTKEQ---------ILGLERMGDTSANNIIKGIEESKKV 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R +F+LGIR VG  +A+ LAK + +  + A+               LI +  +G+ I
Sbjct: 504 PFARALFALGIRFVGETVAKKLAKAFKNIGDLAKASQE----------ELISIDEIGEKI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHK 665
           A++I+ ++    N   V+ L+ E    + ++E+ V+++   +E   +V +G  +   R++
Sbjct: 554 AESIINYFSKEENRIMVQQLV-EYGVQLHQNEEEVANQTNKLEGAAIVISGVFKIHSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            +  + Q G      +S KTD ++ G+N G +KLEKA++LG+KI++EE+FL L+
Sbjct: 613 YKALIEQNGGRNVGSISSKTDYVLAGENMGPAKLEKAEKLGIKIISEEEFLLLI 666


>gi|298245037|ref|ZP_06968843.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963]
 gi|297552518|gb|EFH86383.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963]
          Length = 700

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 220/701 (31%), Positives = 372/701 (53%), Gaps = 52/701 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+  K ++ L  +I   +  Y+    P + D+EYD L      I    P+L     P  P
Sbjct: 30  ERLAKRVAELRHQIEEANYQYHVLDNPTLSDAEYDQLMIELQRIEGEHPELV---TPESP 86

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133
             ++G      + + +H +P LSL    + ++L  +    Y+  Q    N+ F +  E K
Sbjct: 87  TQRVGAGPLQDVAQYSHPVPMLSLANARSEKELYDW----YKRAQNILPNATFTYVCELK 142

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEV 191
           IDG  + + Y++G+    A RG+G  GED +  +R I +IP+ L  +  IPE +EVRGE+
Sbjct: 143 IDGLAMALTYDQGRLTMGASRGNGLVGEDWTPNVRTIRSIPQKLHDAAPIPEKVEVRGEI 202

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+S   F  LN++M     K +ANPRNAA+G LR+ +P    TR L+FF + +G    + 
Sbjct: 203 YMSTQSFEKLNEQMAE--NKLFANPRNAAAGSLRQKDPRITGTRNLDFFGYQIGYVQGMR 260

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  +E LQ ++  GFP+N  V+ A+T   ++++ N+ +  R  LPY+IDG+V K+++ +
Sbjct: 261 IQSHWETLQLIKEWGFPLNPHVQLAHTLEEVMAFCNKWEHERFNLPYEIDGVVIKINDLA 320

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  AR PRW I+ K+   Q +TRLLDI + IGRTG + P A LEP+NI G  ++ 
Sbjct: 321 HQEELGVVARDPRWAIAFKYPPIQVATRLLDIKVNIGRTGSVNPWAELEPINIRGVTVSR 380

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNE+ I+            +D+RVGD VLV+RAGEVIP+VV  ++ +R    + +  
Sbjct: 381 ASLHNEEDIQ-----------RKDLRVGDWVLVQRAGEVIPQVVKPVMEKRTGSEEVYHL 429

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C + ++R  +       A   C   L C A+  E   HFVS+ A +++ +G++ 
Sbjct: 430 PENCPRCGTAIIRIPDQ------AMAYCP-NLQCPARNFESFTHFVSKGAMDMDTIGEKT 482

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +   +    A  ++  +D + L R        +  + G  + S  N+ ++I   +   L
Sbjct: 483 CEQLME----AGYLQSVSDFYHLTR------DDLLELEGIKEKSANNMLNAIEASKQRPL 532

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F L IR+VG + A+ LA  +        +++ ++A +      +  VP +G  I Q
Sbjct: 533 SRLLFGLNIRYVGEKTAQLLADAF-------GDMDTLMAASE---AQINEVPGIGPKIGQ 582

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ +++Q   N   +E  L+    ++    K+V   +  +  + TG L  + R  A+E +
Sbjct: 583 SVAQWFQQEENQALIER-LRAAGLNMREERKHVEGPLTGQSFLLTGRLNTMTRTAAEEAI 641

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
             LG  +++ +S+    +I G++ GSKL KAQ+  V + +E
Sbjct: 642 KALGGTIASGVSKSLSHLIAGEDAGSKLAKAQKAKVPVHDE 682


>gi|319946751|ref|ZP_08020985.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641]
 gi|319746799|gb|EFV99058.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641]
          Length = 652

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 223/702 (31%), Positives = 378/702 (53%), Gaps = 60/702 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   KEL +L   ++++ + YY    P + D EYD L R   A+  A P+L +   PN 
Sbjct: 1   METRMKELVTL---LNHYAEEYYTKDAPSVSDYEYDKLYRELVALEEAHPELVQ---PNS 54

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P +++GG +     K  H+ P  SL+  ++ E+L  F  R+     +K+  ++ +  E K
Sbjct: 55  PTHRVGGTILKGFEKYQHTYPLYSLQDAFSYEELVAFDQRV-----RKEFPAVTYVCELK 109

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++ Y +G     A RGDG  GE+++  ++ +  IP VL    P  + VRGE Y+
Sbjct: 110 IDGLSISLSYVEGVLETGATRGDGSIGENITENLKRVRDIPLVLPE--PLTLTVRGECYM 167

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            +  F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S     
Sbjct: 168 PRASFDAVNLSRQENGEAEFANPRNAAAGTLRQLDTKIVAERKLATFLYQ--EASPTDQT 225

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q ++L K+  LGF VN   +   +   + +Y  E+ ++R  LPYDIDG+V KV++ ++Q
Sbjct: 226 SQEKVLAKLERLGFVVNPHHKTVTSIEQVWAYIQEVAAMRDQLPYDIDGVVIKVNDLAIQ 285

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ AT
Sbjct: 286 EELGFTVKAPKWAVAYKFPAEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRAT 345

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYI             +DIR  D V+V +AG++IP V+ +++++R  + +    PS
Sbjct: 346 LHNVDYI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVMDKRVSEER-LEIPS 393

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP CQS ++   +        A RC     C AQ  E L HF SRDA NI GLG   ++
Sbjct: 394 HCPSCQSELLHFEDE------VALRCINP-RCPAQIKEGLAHFASRDAMNITGLGPAVVE 446

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F  E     ++  A I+ L      +   +  + GF + S   L D+I   +  S E+
Sbjct: 447 KLFSKE----LVQDVAGIYRL------TVDDLLQLDGFKEKSAQKLIDAIQASKGNSAEK 496

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            +F LGIRHVG++ ++ L + + S    A+ E+  I A ++           +G ++A++
Sbjct: 497 LLFGLGIRHVGSKASQLLLQEFHSIPALAEAEVERIAAIDS-----------LGMVVAES 545

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEY 669
           +  ++    +   +E  LK+   ++    + V+++  +  K +V TG L+++ R +A+  
Sbjct: 546 LKRYFAQEGSQLLLEE-LKDAGVNLDYLGQKVAADAPLSGKTVVLTGKLERLTRSEAKAK 604

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +  LGA V+  +S+ TD+++ G + GSKL KAQ+L ++I +E
Sbjct: 605 LEALGAKVTGSVSKNTDLLVAGSDAGSKLSKAQELSIEIQDE 646


>gi|15672401|ref|NP_266575.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. lactis
           Il1403]
 gi|81538437|sp|Q9CIE4|DNLJ_LACLA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|12723294|gb|AAK04517.1|AE006278_8 DNA ligase [Lactococcus lactis subsp. lactis Il1403]
 gi|326405996|gb|ADZ63067.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis CV56]
          Length = 654

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 233/716 (32%), Positives = 372/716 (51%), Gaps = 72/716 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE   KEL+    + +Y    YY   +P + DSEYD L +    +    P L R++ P
Sbjct: 1   MNIESKIKELTEKLNQYAYE---YYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRADSP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
               ++ GG +     K  H     SL  +++ E+L  +  R+     +K+  +  +  E
Sbjct: 58  T---HRTGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERV-----RKEIANPEYICE 109

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRG 189
            KIDG  +++ YE G  + AA RGDG +GE+++  ++ I  +P    L + E I+  VRG
Sbjct: 110 LKIDGLSLSLYYENGLLMTAATRGDGTTGENITENVKRIKDVP----LKLKEAIDIVVRG 165

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ + +F  LN E    G  P+ANPRNAA+G LR+L+   +  R L  F++   + S 
Sbjct: 166 EAYLPRKNFAKLNKERELEGATPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQ--EASP 223

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q E+L+    LGF VN   + A     I  +  E   +R  LPYDIDG+V KV+ 
Sbjct: 224 ATNDTQEEVLEYFEELGFQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNN 283

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q++LG   ++PRW I++KF  +QA T +L +D  +GRTG++TP A + PV +    +
Sbjct: 284 LAEQEELGFTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN DYI+            +DIR+GD VL+ +AG++IPKV  +++++R    +  
Sbjct: 344 ARATLHNVDYIE-----------EKDIRIGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGL 392

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S ++   +        A RC   L C AQ  E+L HF SRDA NI GLG 
Sbjct: 393 EIPTKCPECGSELIHFEDE------VALRCVNPL-CPAQIREKLIHFASRDAMNIVGLGP 445

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKR 545
             +   F         ++ AD+  L +        IE++L    V  T    +  +I + 
Sbjct: 446 SVISQLFDK-------KLVADVADLYQ------LTIEDLLTLDKVKETLAQKIVSAIAQS 492

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R  S E+ +F LGIRHVG + A+ L + + + +  ++     I+           +P +G
Sbjct: 493 RENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSKATEEEISE----------IPSLG 542

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKI 661
            +IA A+V +++        + LL E+  +    +     N+   +  K +V TG L  +
Sbjct: 543 GVIATAVVSYFETD----GAKILLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTL 598

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +R +A+E +  LGA VS  +S+KTD+++ G+  GSKL KAQ LG++I +E+  L L
Sbjct: 599 KRSEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL 654


>gi|281490961|ref|YP_003352941.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147]
 gi|281374719|gb|ADA64239.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147]
          Length = 654

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 233/716 (32%), Positives = 372/716 (51%), Gaps = 72/716 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE   KEL+    + +Y    YY   +P + DSEYD L +    +    P L R++ P
Sbjct: 1   MNIESKIKELTEKLNQYAYE---YYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRADSP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
               ++ GG +     K  H     SL  +++ E+L  +  R+     +K+  +  +  E
Sbjct: 58  T---HRTGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERV-----RKEIANPEYICE 109

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRG 189
            KIDG  +++ YE G  + AA RGDG +GE+++  ++ I  +P    L + E I+  VRG
Sbjct: 110 LKIDGLSLSLYYENGLLMTAATRGDGTTGENITENVKRIKDVP----LKLKEAIDIVVRG 165

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ + +F  LN E    G  P+ANPRNAA+G LR+L+   +  R L  F++   + S 
Sbjct: 166 EAYLPRKNFAKLNKERELEGAAPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQ--EASP 223

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q E+L+    LGF VN   + A     I  +  E   +R  LPYDIDG+V KV+ 
Sbjct: 224 ATNDTQEEVLEYFEELGFQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNN 283

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q++LG   ++PRW I++KF  +QA T +L +D  +GRTG++TP A + PV +    +
Sbjct: 284 LAEQEELGFTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN DYI+            +DIR+GD VL+ +AG++IPKV  +++++R    +  
Sbjct: 344 ARATLHNVDYIE-----------EKDIRIGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGL 392

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S ++   +        A RC   L C AQ  E+L HF SRDA NI GLG 
Sbjct: 393 EIPTKCPECGSELIHFEDE------VALRCVNPL-CPAQIREKLIHFASRDAMNIVGLGP 445

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKR 545
             +   F         ++ AD+  L +        IE++L    V  T    +  +I + 
Sbjct: 446 SVISQLFDK-------KLVADVADLYQ------LTIEDLLTLDKVKETLAQKIVSAIAQS 492

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R  S E+ +F LGIRHVG + A+ L + + + +  ++     I+           +P +G
Sbjct: 493 RENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSKATEEEISE----------IPSLG 542

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKI 661
            +IA A+V +++        + LL E+  +    +     N+   +  K +V TG L  +
Sbjct: 543 GVIATAVVSYFETD----GAKILLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTL 598

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +R +A+E +  LGA VS  +S+KTD+++ G+  GSKL KAQ LG++I +E+  L L
Sbjct: 599 KRSEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL 654


>gi|325335472|gb|ADZ11746.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Riemerella
           anatipestifer RA-GD]
          Length = 669

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 224/712 (31%), Positives = 362/712 (50%), Gaps = 50/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S++  + ++  L +E+  H+  YY    P I D E+D +      +  A+P+ A   D 
Sbjct: 1   MSLDDIKHKIEELREELHQHNYNYYVLDTPSISDYEFDMMLEELKELELAYPEFA---DN 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG +  +   V H     SL+  +N EDL  +  R+ +     D   I +  E
Sbjct: 58  NSPTQRVGGNITKNFPTVEHRHRMYSLDNSYNFEDLSDWQNRLIKSL---DTTDIEYVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I+I YE G F  A  RGDG  G++++A ++ I  IP  +    P    +RGE+
Sbjct: 115 LKYDGASISILYENGAFKQAITRGDGFQGDEITANVKTISDIPLKIKGEYPNTFYIRGEI 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y++K  F  +N      G   + NPRN ASG L+  + T++  R L+  ++ +    E  
Sbjct: 175 YLTKKHFNLINKAREKEGLDLFMNPRNTASGSLKMQDSTEVRKRKLSAVLYQV-VAEETP 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K  +E+L++ +  GF  +   +       + ++ +     R  L ++IDG+V KV+   
Sbjct: 234 VKTHWELLEQTKDWGFKTSQQAKLCKNLDEVKAFIDYWDKERQHLDFEIDGIVIKVNSLK 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  A+SPRW +++KF  ++  T+L  I  Q+GRTG +TPVA L+PV + G ++  
Sbjct: 294 QQQLLGYTAKSPRWAMAYKFKAEKVETQLESISYQVGRTGAITPVANLKPVLLAGTVVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+ L+   +           D V V++ GE+IPK+V +   +R P+A    +
Sbjct: 354 ASLHNEDIIRKLNLHNQ-----------DFVYVEKGGEIIPKIVGVNEEKRQPNATLVEY 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            S CP C + +VR+         AAH C     C  Q + ++ H+VSR A NIE LG + 
Sbjct: 403 ISHCPECNTPLVRNEGE------AAHFCPNEAHCPPQVVGKMIHYVSRKALNIENLGSET 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F+       I   AD +TL + Q     ++       + S  N+ D I K + I  
Sbjct: 457 IEQLFREG----LISNIADFYTLTKEQLLPLERM------AEKSAQNILDGIEKSKQIPF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGI+HVG  +A+ L K      NF    + I          L  V  VG  IA+
Sbjct: 507 EKVLFGLGIKHVGETVAKKLVK------NF----HTIDGLKKATLEELTEVEDVGIKIAE 556

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQ 667
           ++V ++QN  NI  ++  LK     + + E     VS  +E K  +FTG L    R +A+
Sbjct: 557 SLVNYFQNEENIEILDR-LKSYGIQLEQEENTNTKVSDALEGKTFLFTGKLSLFTREQAE 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLL 718
           E V + G    + +S+  + ++VG+  GSKL+KAQ LG V I++E++FL L+
Sbjct: 616 EMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQTLGTVTILDEQEFLDLI 667


>gi|88809499|ref|ZP_01125007.1| DNA ligase [Synechococcus sp. WH 7805]
 gi|88786718|gb|EAR17877.1| DNA ligase [Synechococcus sp. WH 7805]
          Length = 692

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 221/717 (30%), Positives = 371/717 (51%), Gaps = 58/717 (8%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L Q ++     YY    P + D+ YD L R    +  A P+L  ++ P     ++GG 
Sbjct: 6   AELRQLLNRAAHAYYVLDAPDLEDAVYDRLYRELLDLESAHPELVEADSPT---QRVGGS 62

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEPKIDG 136
                  VTH +P  SL+  ++ ++LR + TR+ +   ++  +     ++    E KIDG
Sbjct: 63  PAEGFRSVTHRVPLFSLDNAFSADELRGWYTRLIKVLDREPPSDSPLPALAMVGELKIDG 122

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             + + YE G  V AA RGDG  GE+++A +R I +IP  L L+  P  +EVRGE  I  
Sbjct: 123 NALALSYENGVLVRAATRGDGDQGEEITANVRTIASIPLRLHLDHPPAWVEVRGEALIPD 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK-- 252
           + F A+N E  A     +ANPRNA +G LR+L+P  +  R L+FF + L    E   +  
Sbjct: 183 STFAAINGERAARDEPLFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPEEWSGQRP 242

Query: 253 -GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q+E L+ +   GF VN           +  ++++  S R  L Y  DG+V K+++  L
Sbjct: 243 ASQWESLRWLEDAGFRVNPNAALLPNLEAVEQFFSDWDSRRHDLNYATDGVVVKLNDLRL 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q   G   ++PRW I+ K+  ++A +RLL +  Q+GRTG++TPVA  EPV++ G  ++ A
Sbjct: 303 QDAAGFTQKAPRWAIALKYPAEEAPSRLLKLTCQVGRTGVVTPVAEFEPVSLAGTSVSRA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D ++ L           D+  GD ++V++AGE+IP+V+ ++   R   A P   P
Sbjct: 363 TLHNADRLQEL-----------DLHSGDTIIVRKAGEIIPEVLRVLPELRLEGALPLELP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S +VR+    +G+  AA RC    +C A     L+H+VS+ A +++GLG + +
Sbjct: 412 HHCPSCGSDLVRE----SGE--AATRCVNS-SCPAILSGALRHWVSKGALDVDGLGSKLI 464

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +       +R  AD++ L     TS  ++      G+ S +NL  ++ + R+    
Sbjct: 465 EQLVER----GLVRSIADLYRLDTALLTSLERM------GEKSASNLVAALEQSRSQPWS 514

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGI HVG   A++LA  +    + A   +  +        ++  +  +G  IAQ+
Sbjct: 515 RQLYGLGIHHVGEVNAKALASAFPDADSLA---DAAVLQPE----AITGLHGIGPEIAQS 567

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---------NVSSEIENKKLVFTGTLQKIQ 662
           + +++    N   ++  L++V  ++   ++         N S ++  +  V TGTL  + 
Sbjct: 568 LQQWFSTSANQDLLQQ-LRDVGLTLAASDQERQTLADRSNGSGQLSGQTFVLTGTLPSLS 626

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +AQ  +   G  VS  +S+KT  ++ GD  GSKLEKA+ LGV +++E   + L+Q
Sbjct: 627 RSQAQALIEAAGGKVSGSVSKKTSFVVAGDEAGSKLEKAKSLGVSVLDEAALMLLIQ 683


>gi|323351288|ref|ZP_08086944.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66]
 gi|322122512|gb|EFX94223.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66]
          Length = 652

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 228/698 (32%), Positives = 366/698 (52%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  R+     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRV-----RKEFPQVSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YE G  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYENGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQADSQE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            +L K+  L F VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++L
Sbjct: 229 AVLNKLADLDFSVNPTHILADSIDSVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +P   PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNINGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSLGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LG
Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A VS  +S+KT++++ G + GSKL KAQ+LG++I +E+
Sbjct: 610 ANVSGSVSKKTNLVVAGADAGSKLAKAQELGIEIRDED 647


>gi|116630136|ref|YP_815308.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323]
 gi|122272927|sp|Q041K2|DNLJ_LACGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116095718|gb|ABJ60870.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323]
          Length = 668

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 224/722 (31%), Positives = 379/722 (52%), Gaps = 70/722 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  QA +++  L +++    + YY    P++ D+ YD   +    +   FPDL  S+  
Sbjct: 4   LTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTSDSI 63

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       + + + +E
Sbjct: 64  T---QRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLV----GHPVAYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G + +ANPRNAA+G LR+L+   IT  R L+ F++      + 
Sbjct: 175 YMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPKN 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   ++  +   +  + +E  + R+ L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQTGQRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +++
Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTVVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DY++            + +R+GD V + +AG++IP++  +++N+R  D++P+ 
Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPYQ 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487
            P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG  
Sbjct: 402 IPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGPR 454

Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             KQ +D  F        +   AD++ L   Q      +  +  F D S+TNL  SI   
Sbjct: 455 IVKQLIDKNF--------VNDVADLYHLTNEQ------LSQLDHFKDKSITNLLTSIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  S E  +F LGI HVGA+ AR + + Y + +  +Q               L  +  +G
Sbjct: 501 KQNSAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658
           + IA+++  ++  P    + + LL+E+  S      +G  E+       + K +V TG L
Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               R +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +
Sbjct: 607 SDFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666

Query: 719 QQ 720
           ++
Sbjct: 667 EK 668


>gi|195941083|ref|ZP_03086465.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 504

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/544 (36%), Positives = 313/544 (57%), Gaps = 52/544 (9%)

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEV++ +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+
Sbjct: 1   MEVRGEVFLPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGV 60

Query: 244 GKTSEIFAKGQYEMLQKMRCL-----GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           G    I   G        R L     G PV+N V+  ++   ++++Y++++  R TL +D
Sbjct: 61  G----ILEGGDLPDTHLGRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFD 116

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV+  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARL
Sbjct: 117 IDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARL 176

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G L++NATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ 
Sbjct: 177 EPVQVAGVLVSNATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVE 225

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           +ER  D +   FP+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR
Sbjct: 226 SERPADTRAIEFPAHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSR 279

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +++G+G + +D   + E     +  PAD+FTL      +  K+  +   G  S  N+
Sbjct: 280 RAMDVDGMGDKIIDQLVEKE----YVHTPADLFTL------TAGKLTGLDRMGPKSAQNI 329

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            +++   +N +  RF+++LGIR VG   A  LA Y+ +     +   +           L
Sbjct: 330 VNALEAAKNTTFARFLYALGIREVGEATAAGLAAYFGTLDALEKATID----------EL 379

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVF 654
            +VP VG ++A  +  F+    N   +  LL++     +P +   E+ + S    K +V 
Sbjct: 380 QKVPDVGIVVATHVYNFFAEESNREVIGKLLEQGIHWPAPVVVNAEE-IDSPFAGKTVVL 438

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L ++ R  A+  +  LGA V   +S+KTD++I G+  GSKL KAQ+LG+++++E + 
Sbjct: 439 TGSLSQLSRDDAKARLVALGAKVVGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 498

Query: 715 LFLL 718
           + LL
Sbjct: 499 MRLL 502


>gi|319956399|ref|YP_004167662.1| DNA ligase, nad-dependent [Nitratifractor salsuginis DSM 16511]
 gi|319418803|gb|ADV45913.1| DNA ligase, NAD-dependent [Nitratifractor salsuginis DSM 16511]
          Length = 657

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 235/698 (33%), Positives = 365/698 (52%), Gaps = 77/698 (11%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P + D  YD L R  +A   A PD     DP  P  ++G  +     K  H  
Sbjct: 21  AYYVEDNPEVTDEVYDRLYREVEAYEKAHPD---EIDPTSPTQRVGAPLKEGFKKAKHLS 77

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
              S+E ++N  +  ++  RI     KK     ++ +EPK DG  + + YE G    A  
Sbjct: 78  RMWSMEDVFNAAEFEEWFNRI----DKKYPGERYY-IEPKFDGASLNLIYENGLLKQAIT 132

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GEDV+A  + I +IP  L +    +IE+RGEV ++  +F  +N E IA G +P+
Sbjct: 133 RGDGVEGEDVTANAKTIRSIP--LDIAHKSLIEIRGEVLMTIEEFERINKERIAAGEQPF 190

Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+P+    R L F   G+G          YE L  +  +G+  + G 
Sbjct: 191 ANPRNAAAGSLRQLDPSITAKRNLIFQPWGVGVND-----LDYEYLSDL--MGYVYDLGF 243

Query: 273 RQA------NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           R+        T   I + Y ++  +RS LP  +DG+V KVD  +LQ+ LG   + PRWM+
Sbjct: 244 RKPPLREVKRTPKEIEAVYEKLDKMRSQLPVMLDGMVVKVDRIALQEILGYTVKYPRWMV 303

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++KF   +  TRLLD+  Q+GRTG++TPVA LEPV I G ++  ATLHN DYI+ L    
Sbjct: 304 AYKFPAVEKQTRLLDVIPQVGRTGVITPVAVLEPVEIEGVVVERATLHNYDYIEKL---- 359

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                  DIR+GD V V R+G+VIPK++ ++   R    +P   P+ CP+C S V+ +  
Sbjct: 360 -------DIRIGDMVTVIRSGDVIPKIIKVLPQYRTGKEKPIQRPTRCPVCGSEVLDE-- 410

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---QQLDFFFKSEDPAFS 503
              G LV   +C   L+C A+ +  + +F S+   NI+GLG+   QQL          + 
Sbjct: 411 ---GPLV---KCQ-NLSCPARVVNSIIYFASKQCMNIDGLGEKIVQQL----------YD 453

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
             +  D+  L   ++    K+E   GFG+     L ++I   +     RF+ +LGI H+G
Sbjct: 454 AGLVKDVEDLYHLKKEDLLKLE---GFGEKKAEKLLEAIEASKGRECWRFVNALGIEHIG 510

Query: 564 AEIARSLA-KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
              ++ +  K+ L + +  +E             +L+ +   G+ +A + +EF +   N 
Sbjct: 511 EVASKKICEKFGLDFIHADKE-------------ALLSIEGFGEEMANSFLEFMRV--NG 555

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             V+ L++ V P   + E+ V S    K +V TG ++K  R + +E +  LGA V+  +S
Sbjct: 556 EKVKRLMEIVRPKPPQKEEVVESPFTGKTVVLTGAMKK-PRSEIKEMLEHLGAHVTNTVS 614

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            KTD +I G++PGSK +KA+QLGV ++ EE+   +L +
Sbjct: 615 HKTDYVIYGEDPGSKFDKAKQLGVTLLPEEKMWEMLGE 652


>gi|251782129|ref|YP_002996431.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390758|dbj|BAH81217.1| NAD-dependent DNA ligase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 652

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 225/698 (32%), Positives = 366/698 (52%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L + ++ +   YY    P + DSEYD L R    + + +P+    + P      
Sbjct: 2   KKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQDSPT---QN 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+     K +     +  E K+DG 
Sbjct: 59  VGGTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRV-----KSEFPDATYLAELKVDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G+    A RGDG  GE+++  ++ I  IP+VL    P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGQLQVGATRGDGSVGENITENLKQIKDIPQVLPQ--PLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+E    G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q  
Sbjct: 172 FKAINEERQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLYQ--EASPTTRSQQNH 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +  LGF VN     +++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLKALADLGFSVNQRHHLSSSMDEIWDFIQTVEAERDQLAYDIDGIVIKVNNLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   PS CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVSDKRQEQV-PMWIPSQCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS +V   +        A RC   L C +     L+HF SR+A NI GLG   ++  F 
Sbjct: 398 CQSDLVHFEDE------VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLFL 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +        + ++ G  + S   L  +I   ++ S E+ +F 
Sbjct: 451 ----AGLVHDVADIYKLTKED------LLHLDGIKEKSAEKLLAAIETSKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+GA+ +R + +          +I +++    +D   +  +  +G +IA+++V+++
Sbjct: 501 LGIRHIGAKASRLILET-------CGDIEHLLTVREED---IATIDGLGMVIAKSLVQYF 550

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIE--NKKLVFTGTLQKIQRHKAQEYVTQLG 674
           Q    I  VE  LK    ++    + + S  E     +V TG L+K+ R+ A+  +  LG
Sbjct: 551 QQDSAILLVEE-LKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A V+  +S+KTD++I G + GSKLEKAQ LG++I  EE
Sbjct: 610 AKVTGSVSKKTDLVIAGSDAGSKLEKAQALGIRIEGEE 647


>gi|284992468|ref|YP_003411022.1| DNA ligase, NAD-dependent [Geodermatophilus obscurus DSM 43160]
 gi|284065713|gb|ADB76651.1| DNA ligase, NAD-dependent [Geodermatophilus obscurus DSM 43160]
          Length = 716

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 218/708 (30%), Positives = 366/708 (51%), Gaps = 39/708 (5%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + AR     L +E+  +   YY    P++ D +YD L     +I  A P L     P+ P
Sbjct: 26  DDARTRHRDLSEELDRYAFAYYVQDAPLVSDGQYDELMGELKSIEAAHPALVT---PDSP 82

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+ G    +   V H     SL+  ++ ++L  +  R+    +++  ++  +  E K+
Sbjct: 83  SQKVNGGFAATFAPVKHLERMQSLDNAFSSDELSAWAARV----EREVGSAAVYLCELKV 138

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + YE+G+ + AA RGDG +GEDV+A +R +  +P+ LS + +P ++EVRGE+Y 
Sbjct: 139 DGVAVDLVYERGRLLRAATRGDGVTGEDVTANVRTMDDVPQQLSGDDVPPLLEVRGEIYF 198

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
               F  +N   +A G+ P+ANPRNAA+G LR+ +     +R L   VHGLG       +
Sbjct: 199 PVEAFAEVNAGQVADGKPPFANPRNAAAGSLRQKDARVTASRPLRLVVHGLGAREGFSPE 258

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E   ++R LG PV++ V   +   G+ +Y    +  R ++ ++IDG+V KVD+ +LQ
Sbjct: 259 RQSEAYARLRELGLPVSDRVEVLDDLEGVWAYIERYREQRHSVEHEIDGVVVKVDQVALQ 318

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I+ K+  ++A+T+LLDI + +GRTG +TP A +EPV + G+ +  AT
Sbjct: 319 RRLGSTSRAPRWAIAFKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVKVAGSTVQLAT 378

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   +K         R G  + +GD V++++AG+VIP+V+  +V  R  D + F  P+
Sbjct: 379 LHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVAARTGDEREFEMPT 427

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +  +   K G   A  RC    +C AQ  ER+ H   R AF+IE LG +   
Sbjct: 428 HCPECGTELRHE---KEGD--ADIRCPNARSCPAQLRERVFHVAGRGAFDIENLGYEAGI 482

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +       I    D+F+L   +   T       G    +   L  ++  R+++ L R
Sbjct: 483 ALLQE----HLIEDEGDVFSLDEEKLERTAFFTKKDGALSANGRKLLTNLQTRKDVPLWR 538

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +L IRHVG   A++LA+ + S    A+     +A  +           VG  IA+++
Sbjct: 539 VLVALSIRHVGPTAAQALARDFRSLDRIAEASEEELAAADG----------VGPTIARSV 588

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            E++    +   VE             E      +    +V TG+L+   R +A   + +
Sbjct: 589 KEWFAVDWHRGVVEKWRAAGVRMADEGEDAGPGPLTGVAVVVTGSLRDHSRDQAIAAIQE 648

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            G  V+  +S+KT  ++VG +PGSK +KA Q+   I++++ F  LL++
Sbjct: 649 RGGKVTGSVSKKTGFVVVGADPGSKYDKAVQVKAPILDDDGFRVLLEE 696


>gi|324993931|gb|EGC25850.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK405]
 gi|324994750|gb|EGC26663.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK678]
 gi|327463193|gb|EGF09514.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1]
          Length = 652

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 228/698 (32%), Positives = 368/698 (52%), Gaps = 55/698 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P D+     P+ P +
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     K  H  P  SL+  ++ E+L  F  RI     +K+   + +  E KIDG
Sbjct: 58  RVGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRI-----RKEFPQVSYLCELKIDG 112

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YEKG  V  A RGDG  GE+++  ++ +  I  +L+L  P  I VRGE Y+ K 
Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDI--LLTLKEPLDITVRGECYMPKA 170

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++     +++ +  Q 
Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            +L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++L
Sbjct: 229 AVLNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    PS CP
Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVDSKRVSE-EHLEIPSHCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F
Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                     +  D+  + R    +  ++EN   F + S   LY +I   +  S ER +F
Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYIAIQASKENSAERLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614
            LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++   
Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSIGTVIAQSLHTY 549

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LG
Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           A VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+
Sbjct: 610 ANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647


>gi|262282968|ref|ZP_06060735.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA]
 gi|262261220|gb|EEY79919.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA]
          Length = 652

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 229/685 (33%), Positives = 365/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R   ++   +P+      P  P +++GG++     K  H  P
Sbjct: 19  YYTKDAPSVSDSEYDQLYRELVSLEEQYPNEIL---PESPTHRVGGKVLDGFEKYQHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++  +L  F  R+     +K+   + +  E KIDG  I++ YE G  V  A R
Sbjct: 76  LYSLQDAFSRAELVAFDERV-----RKEFPEVSYLCELKIDGLSISLAYENGILVAGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K  F A+N      G   +A
Sbjct: 131 GDGSIGENITENLKRVKDIP--LTLPEPLTITVRGECYMPKASFDAVNQLRQENGEAEFA 188

Query: 215 NPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           NPRNAA+G LR+L+ + + +     F       TSE     Q ++L+K+  LGF VN   
Sbjct: 189 NPRNAAAGTLRQLDTSVVAKRNLATFLYQEASPTSE---ATQEDVLEKLSQLGFSVNEKR 245

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
             A+T   +  +  ++   R  LPY+IDG+V KV+  + Q++LG   ++P+W I++KF  
Sbjct: 246 VLASTIDQVWDFIEKVGQERDKLPYEIDGIVIKVNHLAAQEELGFTVKAPKWAIAYKFPA 305

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI+            
Sbjct: 306 EEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIR-----------E 354

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           +DIR  D V+V +AG++IP V+ ++ ++R  D +    PS CP CQS ++   +      
Sbjct: 355 KDIRKDDTVIVYKAGDIIPAVLRVVESKRVSD-EHLDVPSQCPSCQSDLLHFEDE----- 408

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
             A RC   L C AQ +E L HF SRDA NI GLG   ++  F  +     +R  A I+ 
Sbjct: 409 -VALRCINPL-CPAQIMEGLAHFASRDAMNISGLGPAVVEKLFAKD----LVRDVAGIYR 462

Query: 513 LQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
           L          IE++L    F + S   LY++I   ++ S E+ +F LGIRHVG++ +R 
Sbjct: 463 L---------SIEDLLQLENFKEKSANKLYNAIQASKSNSAEKLLFGLGIRHVGSKASRI 513

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRNICAVEAL 628
           L + +    + AQ     IA           +  +G +IA+++  ++ Q    I   E  
Sbjct: 514 LLEKFHDIPSLAQAEQEEIAS----------IDSLGMVIAKSLHSYFAQEGTQILLKE-- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           L+E   ++    + V+++  +  K +V TG L+ + R +A+E + +LGA V+  +S+KTD
Sbjct: 562 LEEAGVNLAYLGEKVAADAVLSGKTVVLTGKLETLTRTQAKEKLLRLGANVAGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           ++I G + GSKL KAQ+LG++I +E
Sbjct: 622 LVIAGVDAGSKLAKAQELGIEIQDE 646


>gi|319955749|ref|YP_004167016.1| DNA ligase [Cellulophaga algicola DSM 14237]
 gi|319424409|gb|ADV51518.1| DNA ligase [Cellulophaga algicola DSM 14237]
          Length = 666

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 227/709 (32%), Positives = 364/709 (51%), Gaps = 52/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           ++++++ +L   +  H+  YY    P I D ++D   +    +    P+     D   P 
Sbjct: 2   ESKQKIEALRIGLREHNYNYYVLDTPTISDYDFDMQLKELQDLEEKHPEFY---DATSPS 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +   + H     SL+  ++ EDL ++  RI R      D  + FT E K D
Sbjct: 59  LRVGGMVTKNFKTIVHDSRMYSLDNSYSKEDLEEWEKRIQR---NLGDVPVAFTCELKYD 115

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I+I YE G+ V A  RGDG  G+DV+  I+ I +IP  L  + P   ++RGE+ +  
Sbjct: 116 GASISITYENGQLVRALTRGDGFQGDDVTNNIKTIKSIPLQLKGDYPPKFDIRGEIVLPF 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-GKTSEIFAKG 253
             F  +N E I  G  PY NPRN ASG L+  +   +  R L   ++G+ G+ + I  + 
Sbjct: 176 EGFAKMNAERIENGEDPYMNPRNTASGSLKLQDSALVAQRPLECLLYGIVGEKTGI--ES 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q++ML+K R  GF V    +   +   ++++       R  LPY+ DG+V KV+    Q+
Sbjct: 234 QFQMLEKARVWGFKVPTVAQLCKSTDEVMAFVEYWDIHRHELPYETDGVVIKVNSLQYQE 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  ++SPRW +++KF  +Q +T L +I  Q+GRTG +TPVA L PV + G  +  A+L
Sbjct: 294 ELGYTSKSPRWAMAYKFKAEQVATLLNEITYQVGRTGAITPVANLVPVLLAGTTVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I              DIR GD V V++ GE+IPK+V +   +R  ++ P  +   
Sbjct: 354 HNADQIAKF-----------DIREGDTVFVEKGGEIIPKIVGVDFAQRPSNSVPTKYIDH 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + + R       +  A H C     C  Q   R++H++SR A +IEGLG + +  
Sbjct: 403 CPECNAELER------AEGDAKHFCPNFYGCPPQITGRIQHYISRKAMDIEGLGGETVAL 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            +K +     I+  AD++TL + Q      +E + G    S  NL + +    +I  ER 
Sbjct: 457 LYKEQ----LIKNYADLYTLTKEQ---VMPLERMAG---KSAENLVNGVKASVSIPFERV 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG  +A+ LAK Y           NI A        L++V  +G+ IA ++V
Sbjct: 507 LFALGIRFVGETVAKKLAKAY----------KNIDALKVASVEELVKVDEIGERIANSVV 556

Query: 614 EFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           EF+QN  N   +E L     +   S  + E N + E++ +  V +G  +K+ R + ++ +
Sbjct: 557 EFFQNETNQETIERLKSYGVQFELSADKLE-NQTEELKGQIFVVSGVFEKVSRDELKKLI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
              G  V + +S KT  ++ GD  G SK  KA+ LGV I++E++FL LL
Sbjct: 616 EDNGGKVGSSVSSKTTFLVAGDKMGPSKRTKAESLGVAIISEDEFLALL 664


>gi|15807063|ref|NP_295792.1| DNA ligase [Deinococcus radiodurans R1]
 gi|81550876|sp|Q9RSQ5|DNLJ_DEIRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|6459863|gb|AAF11619.1|AE002043_4 DNA ligase [Deinococcus radiodurans R1]
          Length = 700

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 219/703 (31%), Positives = 358/703 (50%), Gaps = 52/703 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L  E++ H+  YY+   P I D EYD L R    +  A P+ A   D + P+  +GG  
Sbjct: 20  ALRDEVALHNRAYYEQDAPTIPDDEYDRLARELRELEAAHPEFA---DDHSPVQTVGGAP 76

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMITI 141
           + +   VTH     SL+ +++ ++LR +  ++ R      D +   FT E KIDG  + +
Sbjct: 77  SSAFEPVTHPTQMTSLDNVFDDDELRDWQEKLARSLGLPLDTDDFTFTGELKIDGLSVNL 136

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            Y  G+  +AA RG+G  GE V+A +  IP IP+ L   +   +EVRGEVY+S+ DF A 
Sbjct: 137 YYLDGELQWAATRGNGRVGEIVTAQVLTIPDIPQKLE-GLKGELEVRGEVYLSRADFAAF 195

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           N +   +G     NPRN A+G LR+ +P    TR+L   ++ +GK   + A+ Q+E+L+ 
Sbjct: 196 NAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRHLKAILYAVGKRDGVPARTQWEVLEW 255

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +   GFP +              Y+  M    +   +D DG V K+D  S Q++ G  +R
Sbjct: 256 LSAQGFPTSRSSEHLRGIAAAADYHARMIRAHADFEFDADGTVLKLDSLSQQEEAGFTSR 315

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I++KF  ++  T L  I + +GRTG L P+A L P  I G+ ++ ATLHNEDYI+
Sbjct: 316 APRWAIAYKFPVEEVETVLESITVNVGRTGKLAPLAHLSPRLIEGSTVSKATLHNEDYIR 375

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            +           D+RVGD VLV+++G VIP+++ ++ ++R  DA PF FP+ CP+C   
Sbjct: 376 DM-----------DLRVGDTVLVRKSGGVIPQIMRVLPDKRPADAAPFEFPTHCPVCGHE 424

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
            VR           A+      AC AQ  ER+++FVSR A ++ G+G++ +         
Sbjct: 425 AVRAEGD-------ANTYCPNPACPAQSFERIRYFVSRGAMDVRGIGEKLVTQLLHE--- 474

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              I   A ++TL      S  ++  +   G+    N+   +   +   L R I +LG+ 
Sbjct: 475 -GLIHDAAGLYTL------SAEQLAGLERGGEKKAGNILGQLEASKTKPLWRLINALGMS 527

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP- 619
           HVG   A++LA+ + + +         I            VP +G IIAQ++     +P 
Sbjct: 528 HVGQRNAQALARAFGTLEGLLAATPEQIEA----------VPGLGGIIAQSVTASLADPA 577

Query: 620 -RNICA-VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            R++ A ++A    V+P     E   + ++     V TG L +  R   +  +   G  V
Sbjct: 578 MRDLIARLQA--SGVAPQA--EEVTRTDQLSGLNFVLTGALSR-PREVIKAELEAAGGRV 632

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +++KT  ++ G++ GSKL +A +LGV +++E     LL +
Sbjct: 633 TGSVTKKTSYLVAGEDAGSKLARAGELGVPVLDEAGLAALLAE 675


>gi|86131748|ref|ZP_01050345.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134]
 gi|85817570|gb|EAQ38744.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134]
          Length = 664

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 232/718 (32%), Positives = 375/718 (52%), Gaps = 69/718 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE+   ++  L QE+  H+  YY    P I D E+D    +  A+  A P     +DP
Sbjct: 1   MTIEE---QILQLRQELREHNYNYYTLDTPTISDFEFDKKLEQLKALELANP---AYDDP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P +++GG +  +   + H     SL+  ++ EDL  +  R+    +K  D  + +T E
Sbjct: 55  NSPTHRVGGAVTKNFETIVHEHRMYSLDNSYSKEDLEDWEARV----KKMVDGEVHYTCE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++ YE G+ + A  RGDG  G+DV+  I+ I ++P  L  + P   ++RGE+
Sbjct: 111 LKYDGASISLTYENGELLRAVTRGDGLQGDDVTTNIKTIKSVPLKLKGDYPPKFDIRGEI 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR------YLNFFVHGLGK 245
            +  + F A+N E   +G + Y NPRN ASG L+  +  ++ +        N   + LG 
Sbjct: 171 VLPWDGFHAMNAEREELGFELYRNPRNTASGSLKLQDSAEVAKRPLQCLLYNITGNNLGI 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           T++I      E LQK R  GF V +    A +   ++ + N     R  LPY+ DG+V K
Sbjct: 231 TTQI------ESLQKARDWGFMVPDAAVLAKSIDEVLDFINHWDKARHDLPYETDGVVVK 284

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+    Q++LG  A++PRW +++KF  +Q STRL +I  Q+GRTG +TPVA LEPV + G
Sbjct: 285 VNGLQQQEELGYTAKAPRWAMAYKFKAEQVSTRLREITYQVGRTGAITPVANLEPVELAG 344

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  A+LHN D I+ L           DIR GD V V++ GE+IPK++ + + +R  D+
Sbjct: 345 TTVKRASLHNADQIERL-----------DIREGDEVFVEKGGEIIPKIIAVDLTKRPADS 393

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P  + + CP C +++VR    K G+  A H C   + C  Q + R++H++SR A +I+G
Sbjct: 394 EPTDYIAECPECDTQLVR----KEGE--AQHYCPNDMGCPPQIIGRIQHYISRKAMDIDG 447

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + +            I   AD++ L   Q     ++         S  NL + +   
Sbjct: 448 LGGETVALLVNE----GLILNYADLYELTVAQLLPLERM------AQKSAENLVNGVQAS 497

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
             I  E+ +F LGIR+VG  +A+ LAK+Y S       I+ II+   ++   L+ V  +G
Sbjct: 498 VKIPFEKVLFGLGIRYVGETVAKKLAKHYKS-------IDAIISATEEE---LVAVDEIG 547

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
             IA+++V F+    +I  +E L       E+S        N S  +  K  V +G  + 
Sbjct: 548 IKIAESVVAFFAKAEHIALIERLRSYGVQLEIS---AEKLANQSDVLAGKTFVVSGVFE- 603

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
           + R+  ++ +   G  VS+ +S KT  ++ G+  G SKLEKAQ+LG+ I++E +FL L
Sbjct: 604 MPRNDLKKLIEDNGGKVSSSISSKTSYLVAGEKMGPSKLEKAQKLGITIISEIEFLAL 661


>gi|302558233|ref|ZP_07310575.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
 gi|302475851|gb|EFL38944.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
          Length = 731

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 236/749 (31%), Positives = 376/749 (50%), Gaps = 90/749 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR++ + L + I  H   YY    P+I D+++D   R    +     +      P+ P 
Sbjct: 15  EAREKHAKLAERIEEHRFRYYVNDAPVISDADFD---RLLRELEALEEEHPELRTPDSPT 71

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G        V H    LSL+  +N +DL  ++ RI+R   +       F  E K+D
Sbjct: 72  QKVAGAYETEFTSVEHRSRMLSLDNTFNDDDLAAWVERIHR---ELGTQKYHFLCELKVD 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE+G+ V AA RGDG +GED++  +R I  IP R+    +P+++E+RGEVY  
Sbjct: 129 GLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLTGDEVPDVVEIRGEVYFP 188

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG-----KTSE 248
              F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G     +   
Sbjct: 189 MEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGVLEGYRGMT 248

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYK 305
             ++G YE+L   R  G P +   R  +   G+   ++YY E    R ++ ++IDG+V K
Sbjct: 249 RLSQG-YELL---RTWGLPTSPHNRVVDDLEGVREFIAYYGEN---RHSVAHEIDGVVVK 301

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +DE  LQ +LG  +R+PRW I++K+A ++ +TRL++I + +GRTG +TP A++EPV + G
Sbjct: 302 LDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQVEPVTVAG 361

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    
Sbjct: 362 SEVEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSE 410

Query: 426 QPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           + F  P+ CP C +     L P K G +    RC     C AQ  ERL +   R A +IE
Sbjct: 411 REFVMPAECPECGT----PLRPMKEGDV--DLRCPNARTCPAQLRERLFYLAGRKALDIE 464

Query: 485 GLG---KQQLDFFFKSEDPAFSIRIPADIFTL--------------------QRRQQTST 521
             G      L    + E+P   +R   D+F L                    +R  +T  
Sbjct: 465 HFGYVAAAALTRPLEPEEP--PLRDEGDLFDLTVDQLLPIKAYVLDQDSGLPKRDPKTGE 522

Query: 522 TKIENIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
            KI  +     G    +   +  +I   +   L R + SL IRHVG   A +LA+ + S 
Sbjct: 523 EKIATVFANQEGEPRKNAVAMLANIAAAKERPLARVLTSLSIRHVGPVAAEALAREFRSI 582

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
               Q     +A              VG IIA ++ +++    +      ++++   +  
Sbjct: 583 DRIEQATEEELAATEG----------VGGIIAASLKQWFAEDWH----REIIRKWKTAGV 628

Query: 638 RHEKNVSSE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           R E   S E      +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VG
Sbjct: 629 RMEDERSGEDEGPRPLEGLTVVVTGTLENFTRDGAKEALQSQGAKVTGSVSKKTAFVVVG 688

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           DNPGSK +KA QL V ++NE+ F  LL+Q
Sbjct: 689 DNPGSKYDKAMQLKVPVLNEDGFNVLLEQ 717


>gi|148240764|ref|YP_001226151.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 7803]
 gi|166216252|sp|A5GPI9|DNLJ_SYNPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147849303|emb|CAK24854.1| NAD-dependent DNA ligase [Synechococcus sp. WH 7803]
          Length = 698

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 228/736 (30%), Positives = 371/736 (50%), Gaps = 59/736 (8%)

Query: 12  LSIEQARKELSS-LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +SI Q  +E ++ L Q ++     YY    P + DS YD L R    +  A P+L  ++ 
Sbjct: 1   MSIPQGLQERAAELRQLLNRAAHAYYVLDAPDLEDSVYDRLYRELLDLEAAHPELVEADS 60

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----S 125
           P     ++GG        VTH IP  SL+  ++ E+LR + TR+ +   ++  +     +
Sbjct: 61  PT---QRVGGSPAEGFRSVTHRIPLFSLDNAFSAEELRGWYTRLLKVLDREPPSGSPLPA 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI- 184
           +    E KIDG  + + Y+ G  V AA RGDG  GED++A +R I +IP  L L+ P   
Sbjct: 118 LAMVGELKIDGNALALSYDNGVLVRAATRGDGDQGEDITANVRTIASIPLRLHLDPPPAW 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +EVRGE  I  N F A+N E  A     +ANPRNA +G LR+L+P  +  R L+FF + L
Sbjct: 178 VEVRGEALIPDNTFAAINSERAARDEPLFANPRNACAGTLRQLDPKVVAARRLDFFAYTL 237

Query: 244 GKTSEIFAK---GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
               +   +    Q+E L+ +   GF VN           +  ++ +  S R  L Y  D
Sbjct: 238 HLPEDWSGERPTSQWESLRWLEDAGFRVNPNAALLPDVDSVEQFFGDWDSRRHDLNYATD 297

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+++  LQ   G   ++PRW I+ K+  ++A +RLL +  Q+GRTG++TPVA  EP
Sbjct: 298 GVVVKLNDLRLQDAAGFTQKAPRWAIALKYPAEEAPSRLLKLTCQVGRTGVVTPVAEFEP 357

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V++ G  ++ ATLHN D ++ L           D+  GD ++V++AGE+IP+V+ ++   
Sbjct: 358 VSLAGTSVSRATLHNADRLQEL-----------DLHSGDTIIVRKAGEIIPEVLRVLPEL 406

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R   A P   P  CP C S +VR+    +G+  AA RC    +C A     L+H+VS+ A
Sbjct: 407 RPEGALPLELPQQCPSCGSDLVRE----SGE--AATRCVNS-SCPAILSGALRHWVSKGA 459

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +++GLG + ++   +       +R  AD++ L     TS  ++      G+ S  NL  
Sbjct: 460 LDVDGLGSKLIEQLVERG----LVRSIADLYRLDTALLTSLERM------GEKSAGNLVA 509

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++ + R     R ++ LGI HVG   A++LA  +    + A           D       
Sbjct: 510 ALAQSRTQPWSRQLYGLGIHHVGEVNAKALASAFADAHSLADAAVQRPEAITD------- 562

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---------NVSSEIENKK 651
           +  +G  IAQ++ +++    N   ++  L+ V  ++   ++         N    +  + 
Sbjct: 563 LHGIGPEIAQSLQQWFNTSANQDLLQQ-LRAVGLTLAASDQERQALADRNNGKGHLNGQT 621

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            V TGTL  + R +AQ  +   G  VS  +S+KT  ++ GD  GSKL+KA  LGV +++E
Sbjct: 622 FVLTGTLPSLSRSQAQALIEGAGGKVSGSVSKKTSFVVAGDEAGSKLDKANTLGVSVLDE 681

Query: 712 EQFLFLLQQYNTTLRI 727
              + L+Q    T+ +
Sbjct: 682 AALMLLIQNSADTIHL 697


>gi|29829290|ref|NP_823924.1| NAD-dependent DNA ligase LigA [Streptomyces avermitilis MA-4680]
 gi|81719851|sp|Q82JK7|DNLJ_STRAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29606397|dbj|BAC70459.1| putative DNA ligase [Streptomyces avermitilis MA-4680]
          Length = 730

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 230/742 (30%), Positives = 370/742 (49%), Gaps = 77/742 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR++ + L ++I  H   YY    P++ D+E+D L R  +A+   +P+L     P+ P 
Sbjct: 15  EAREKHAQLAEQIEEHRFRYYVKDAPVVSDAEFDTLLRSLEALEEEYPEL---RTPDSPT 71

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G        V H    LSL+  ++   L  +  R+ +     D     F  E K+D
Sbjct: 72  QKVAGGYETEFTAVQHRERMLSLDNAFDDLGLAAWAERVAKDVGTSD---YHFLCELKVD 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G+   AA RGDG +GED++  +R I  IP R+    IP+++E+RGEVY  
Sbjct: 129 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPDLVEIRGEVYFP 188

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
              F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G         
Sbjct: 189 MEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGARQGFDIDR 248

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +  + +R  G P     R  +   G+   ++YY E    R ++ ++IDG+V K+DE  
Sbjct: 249 LSQAYELLREWGLPTTRYARVVDDLDGVREFIAYYGEN---RHSVEHEIDGVVVKLDEIP 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  
Sbjct: 306 LQGRLGSTSRAPRWAIAWKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    + F  
Sbjct: 366 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTERAFVM 414

Query: 431 PSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           P+ CP C +     L P K G +    RC     C AQ  ERL +   R + +IE  G  
Sbjct: 415 PAECPECGT----PLAPAKEGDV--DLRCPNARTCPAQLRERLFYLAGRKSLDIEQFGYV 468

Query: 490 QLDFFFKSEDPA----------FSIRI----PADIFTL-------QRRQQTSTTKIENIL 528
                 K  +PA          F + I    P   + L       +R  +T   K+  + 
Sbjct: 469 AAAALTKPLEPAEPPLLDEGDLFDLTIERLLPIKAYVLDQDSGLPKRDPKTGEEKVATVF 528

Query: 529 ----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
               G    +  ++ D+I   +   L R +  L IRHVG   A +LA+ + S     Q  
Sbjct: 529 ANQQGEPRKNAISMLDNIAAAKERPLARILTGLSIRHVGPVAAEALARAFRSIDRIDQAT 588

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +   +           VG I+A A+ +++    +      ++++   +  R E   S
Sbjct: 589 EEELKDTDG----------VGPIVAAAVKQWFAEDWH----REIIRKWKAAGVRMEDERS 634

Query: 645 SE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E      +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK 
Sbjct: 635 GEDEGPRPLEGLTVVVTGTLEHHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKY 694

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
           +KA QL V ++NE  F  LL+Q
Sbjct: 695 DKAMQLKVPVLNEAGFAVLLEQ 716


>gi|312867643|ref|ZP_07727849.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405]
 gi|311096706|gb|EFQ54944.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405]
          Length = 652

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 228/699 (32%), Positives = 362/699 (51%), Gaps = 64/699 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL  L    +Y    YY    P + DSEYD L R    +  A PD      P  P +++
Sbjct: 6   KELVELLNRYAYE---YYTKDTPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+     +K+  SI +  E KIDG  
Sbjct: 60  GGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRV-----RKEFPSISYVCELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G  V  A RGDG  GED++  ++ +  IP VL    P  I VRGE Y+ +  F
Sbjct: 115 ISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPE--PVNITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+ T I    N       + S      Q  +L
Sbjct: 173 DRVNQIRQENGEPEFANPRNAAAGTLRQLD-TKIVAKRNLATFLYQEVSPTDQSSQEGVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +K+  LGF VN     A     I  +  ++  +R  LPYDIDG+V KV++ ++Q++LG  
Sbjct: 232 EKLARLGFVVNQERVLAEDMEQIWDFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   ++L +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DI   D V+V +AG++IP V+ ++ ++R  D Q  + P+ CP CQ
Sbjct: 352 I-----------AEKDIHQNDTVIVYKAGDIIPAVLRVVKDKRVSD-QALAIPTHCPSCQ 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS- 497
           S ++   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F + 
Sbjct: 400 SELLHFEDE------VALRCINPL-CPAQIKEGLNHFASRDAMNITGLGPAVVEKLFAAQ 452

Query: 498 --EDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             ED A   R+   D+ TL+              GF + S   LY++I   +  S E+ +
Sbjct: 453 LVEDVAGIYRLTVEDLLTLE--------------GFKEKSAEKLYEAIQASKENSAEKLL 498

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRHVG++++          Q   QE +++      D   +  +  +G ++A+++  
Sbjct: 499 FGLGIRHVGSKVS----------QILLQEFHDLDQLATADPERIASIDSLGMVVAESLKR 548

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++    +   ++  LKE   ++    + V+++  +    +V TG L+++ R +A+  +  
Sbjct: 549 YFAQEGSKRLLQE-LKEAGVNMDYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLES 607

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           LGA V+  +S+KTD+++ G + GSKL KAQ+LG+++ +E
Sbjct: 608 LGAKVTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDE 646


>gi|169350953|ref|ZP_02867891.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552]
 gi|169292015|gb|EDS74148.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552]
          Length = 682

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 233/707 (32%), Positives = 378/707 (53%), Gaps = 59/707 (8%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L+Q+I YH+D YY    P I D EYD + +   A+    P+   +ED   P  K+GGE
Sbjct: 26  NELKQKIMYHNDRYYNQDDPEISDYEYDMMMQELKALEKKHPEYI-TED--SPTQKVGGE 82

Query: 82  MNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
                   V H++P LSL+ +++ E++ +F+  +    ++ DD +  F +E KIDG  + 
Sbjct: 83  AKREAGVLVRHNVPMLSLQDVFSKEEVEQFVKDM---QEQLDDPT--FVVEYKIDGLSLA 137

Query: 141 IRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +RY  GK   A  RGDG   GEDV+A  + I  + + L   I E +EVRGEVY++   F 
Sbjct: 138 LRYVNGKLDVAITRGDGILQGEDVTANAKVIKDVKKKLKEPI-EYLEVRGEVYMTNEAFN 196

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL----GKTSEIFAKG 253
            +N+     G+K +ANPRN A+G LR+L+ + IT  R L+ FV  +    GK     ++G
Sbjct: 197 QVNEMQEIKGKKTFANPRNCAAGTLRQLD-SKITKERNLSMFVFNIQDVRGKQFVSHSEG 255

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE L+K    G  V    +   T   +     E+   R  L YDIDG V K+D F  ++
Sbjct: 256 -YEYLKKQ---GIKVIENYKICKTADEVWQAIEEIGENRDKLKYDIDGAVVKIDNFEDRR 311

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+ PRW I++K+  ++  T+LL+I++ +GRTG +TP A  EP+ + G  ++ ATL
Sbjct: 312 KLGNTAKVPRWAIAYKYPPEEKETKLLEIELSVGRTGRITPTAIFEPIRLCGTTVSRATL 371

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D+I  L           DIR+GD ++V ++GE+IPKV  ++  +R  ++ P+     
Sbjct: 372 HNQDFIDDL-----------DIRIGDTIVVYKSGEIIPKVKRVVKEKRPTNSVPYVIGDR 420

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C +  +R+ N       A  +CT   +C ++ +  + +FV RDA +I+G G   ++ 
Sbjct: 421 CPVCNAPAIREGNN------ADIKCTNH-SCPSKLVRNIVNFVGRDAMDIKGFGLAYVET 473

Query: 494 FFKSEDPAFSIRIPADIFTL-QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                     I+  +DI++L  +RQ+    K+  ++     S  NL ++I K +N    +
Sbjct: 474 LV----SLGYIKDLSDIYSLIGKRQELLDKKVIGLVK----STDNLLNAIEKSKNNDASK 525

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + SLGI +VG   A++L K + S  N            N  +  LI V  +GDI A AI
Sbjct: 526 LLTSLGISNVGKSAAKNLMKKFKSIDNLM----------NASYAQLIEVNDIGDISAMAI 575

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + +++NP N   ++ L           +++     +    V TGTL  + R +A + + +
Sbjct: 576 INYFKNPDNRIVIDKLKNYGVNMKIIEDQDSDDRFDGMTFVVTGTLPTLSRKEASDIIEK 635

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  VS  +S+KT+ ++ G+N GSKL KAQ L VKI++EE    +++
Sbjct: 636 HGGKVSGSVSKKTNYLLAGENAGSKLIKAQSLNVKIIDEETLFEMVK 682


>gi|269123713|ref|YP_003306290.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112]
 gi|268315039|gb|ACZ01413.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112]
          Length = 675

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 221/694 (31%), Positives = 384/694 (55%), Gaps = 49/694 (7%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           +I  ++  YY   + +I D EYDAL ++ + +   FP+L      N P   IGG+ +   
Sbjct: 22  DIEIYNHHYYNLDESLITDREYDALLKKIELLEKEFPELKL---KNSPTEIIGGKSSDKF 78

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
            KV H    LSL   ++++DL+ F  R+    +K+  N++ + LE K+DG  I++ YEKG
Sbjct: 79  KKVKHKKAMLSLANTYSMDDLKAFDQRV----KKEVGNNVEYVLELKLDGLSISLIYEKG 134

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
           K + A  RGDG  GEDV+  +  I TIP++L   I   +EVRGE+ +   +F  +N E  
Sbjct: 135 KLIQAVTRGDGSVGEDVTENVIQISTIPKILKDEID--LEVRGEIVLPLKEFERINRERE 192

Query: 207 AVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
             G   +ANPRN A+G +R+L+ + +  R L+ +++ L  + +     Q E ++ ++ LG
Sbjct: 193 ENGETIFANPRNVAAGTIRQLDYSIVKDRNLDCYLYYLVDSEKYGLNTQLESIEYIQKLG 252

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F       + +    +        + R  L Y+ DGLV KV+E+ L   LG  A+SPRW 
Sbjct: 253 FKTTGIFTKCSKIEDLEKEIEYWDNNRKKLEYETDGLVIKVNEYYLHNLLGYTAKSPRWA 312

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           +++KF  +Q  T++LDI  Q+GRTG++TPVA LEPV+I G+++  A+LHN D IK L   
Sbjct: 313 MAYKFKAEQKETKMLDISFQVGRTGVITPVAELEPVHISGSVVRRASLHNIDEIKRL--- 369

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +++GD V+V++A E+IP+VV +++ +R  + +       CP C + + ++ 
Sbjct: 370 --------GLKIGDIVIVEKAAEIIPQVVKVLLEKRSGNEKEIEIIDKCPSCNNTIFKE- 420

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
               G++  A +C     C  +   ++++FVSRDA NI+G G + +D F    D  + IR
Sbjct: 421 ---EGQV--ALKCKNP-NCVEKLKRKIEYFVSRDALNIQGFGNKLVDKFV---DLGY-IR 470

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
              DIF L+  ++    ++ N+   G  S+  L D+I+K ++I  E+  +SLGI +VG  
Sbjct: 471 SIIDIFKLKNHKE----ELINLDKMGTKSIEKLLDNIDKAKDIGFEKLFYSLGIEYVGKT 526

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            ++ +  ++ S       I NII   N     L+ +  +G+ ++ +I  ++++  NI  +
Sbjct: 527 TSKLVVSHFGS-------IENII---NASLEELVLIEGIGEKVSLSIYNYFKDNENISLI 576

Query: 626 EALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
              +K +   +   ++ +  ++ I NKK + TG      R + ++ + + G +  + +++
Sbjct: 577 NE-IKNIGFDLSFEKEQILNNNFITNKKFLATGKFVNYSREEIKKVIEKNGGIYLSSVNK 635

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             D +I+G+  GSKLEKA++LGV+I+ EE+FL L
Sbjct: 636 NLDYLIIGEKAGSKLEKAEKLGVRIITEEEFLKL 669


>gi|78187553|ref|YP_375596.1| DNA ligase (NAD+) [Chlorobium luteolum DSM 273]
 gi|123743616|sp|Q3B278|DNLJ_PELLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78167455|gb|ABB24553.1| DNA ligase (NAD+) [Chlorobium luteolum DSM 273]
          Length = 677

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 228/704 (32%), Positives = 363/704 (51%), Gaps = 66/704 (9%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           H+  YY  +KP I D ++D L  R   +    P+L     P+ P  ++GG +      V 
Sbjct: 24  HNHLYYVEAKPEISDYDFDRLLLRLIELEREHPELV---TPDSPTGRVGGAVTREFPPVE 80

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H  P LSL   ++I ++ +F  R+ R  + +         E K DG  +++ Y  G  V 
Sbjct: 81  HREPMLSLSNTYSIGEVEEFSARVGRLLEAEGIRDRDMVAELKFDGVAVSLLYRDGVLVR 140

Query: 151 AALRGDGHSGEDVSACIRAIPTIP-RVLSLNIP------EIIEVRGEVYISKNDFLALND 203
            A RG+G  G+D++  +R +PT+P R+ +L+ P        +EVRGEV++ K DF ALND
Sbjct: 141 GATRGNGRRGDDITVNLRTVPTVPLRLQTLDTPFSLGEGREVEVRGEVFMRKEDFTALND 200

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
                 R  +ANPRNA +G L+  +  ++  R L F  + L    +      +  LQ + 
Sbjct: 201 TRPEEDR--FANPRNATAGTLKLQDSAEVAVRRLWFVAYYLDGIQDPDTP-HFHRLQLLE 257

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
             GF      R       I ++       R  LPY+ DG+V K+++    K LG  ++SP
Sbjct: 258 TAGFFTGGHYRLCKGMQEIAAFIARWNEERWHLPYETDGVVLKLNDVRQWKTLGATSKSP 317

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW I++K+  +QA+T L D+  Q+GR G +TPVA LEPV + G+ ++ +TLHN D ++ L
Sbjct: 318 RWAIAYKYPAQQATTVLRDVVFQVGRLGTITPVAELEPVRLAGSTVSRSTLHNFDEMRRL 377

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                       I +GDRV+++++GEVIPKV+ ++   R  DA+    PS CP C + +V
Sbjct: 378 -----------GIMIGDRVVIEKSGEVIPKVIRVVTEARPVDARLVELPSRCPACSTPIV 426

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---QQLDFFFKSED 499
           R+     G++     C     C AQ   R+ HF SR+A +I+ LG+   +QL  F    D
Sbjct: 427 RE----EGEV--GFYCPNEAGCPAQLKGRILHFASRNAMDIQNLGEALVEQLVAFGLVHD 480

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
                  P D++ LQ  Q      + N+   G  S  N+  ++++ R+ S  R +F+LGI
Sbjct: 481 -------PGDLYFLQEPQ------LRNLERMGPKSAQNVVRALDESRSQSYARLLFALGI 527

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVG   AR LA+ + S +         +A   D          +G +IA++I E+++ P
Sbjct: 528 RHVGQATARELARAFPSIEALEAASEEELADVAD----------IGPVIARSIREWFEAP 577

Query: 620 RNICAVEALLKEVS----PSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
               AV ALL+++     P      K  ++S  E   +VFTG L +  R  A E V + G
Sbjct: 578 ----AVSALLEKLRDARLPLAAEDPKPLINSNFEGLSVVFTGALLRHDRQSASELVLERG 633

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + + +S+KT +++ G   GSKLEKA +LG+++++EE+F  +L
Sbjct: 634 GKIVSTVSKKTGLVVAGREAGSKLEKALKLGLRVISEEEFEAML 677


>gi|29346304|ref|NP_809807.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568276|ref|ZP_04845687.1| DNA ligase [Bacteroides sp. 1_1_6]
 gi|81445157|sp|Q8A9C1|DNLJ_BACTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29338199|gb|AAO76001.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842349|gb|EES70429.1| DNA ligase [Bacteroides sp. 1_1_6]
          Length = 666

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 233/713 (32%), Positives = 369/713 (51%), Gaps = 63/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P  +
Sbjct: 4   KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEY---KDENSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N +  +V H  P LSL   ++  ++  F  R+    +K  +       E K DGT
Sbjct: 61  VGSDINKNFTQVAHKYPMLSLANTYSEGEVTDFYERV----RKALNEDFEICCEMKYDGT 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ +   
Sbjct: 117 SISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMPWE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N + + +R L+ +++ L     +   G Y
Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK L
Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+ V + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDAVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429
            D I+GL           D+ +GD V V++ GE+IPK+  +       DA+ F       
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F + CP C S+++R      G+  AAH C    AC  Q   +++HF+SR A NI+GLG +
Sbjct: 400 FITNCPECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F++       I   AD++ L+         I+ +   G+ S  N+   I + + + 
Sbjct: 454 TVDMFYR----LGLIHNTADLYELK------ADDIKGLDRMGEKSAENIITGIEQSKTVP 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER IF+LGIR VG  +A+ +AK +       Q           D   LI +  +G+ IA
Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFGDIDELRQA----------DLEKLISIDEIGEKIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666
           ++I+ ++ N  N   V   LKE    + R E+++S    ++  + +V +G      R + 
Sbjct: 554 RSILLYFSNESNRELV-GRLKEAGLQLYRTEEDMSGYTDKLAGQSIVISGVFTHHSRDEY 612

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           ++ + + G      +S KT  I+ GDN G +KLEKA++LGV I++E++FL L+
Sbjct: 613 KDLIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGVTILSEDEFLKLI 665


>gi|308233598|ref|ZP_07664335.1| DNA ligase, NAD-dependent [Atopobium vaginae DSM 15829]
 gi|328944216|ref|ZP_08241680.1| DNA ligase [Atopobium vaginae DSM 15829]
 gi|327491135|gb|EGF22910.1| DNA ligase [Atopobium vaginae DSM 15829]
          Length = 792

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 239/738 (32%), Positives = 371/738 (50%), Gaps = 68/738 (9%)

Query: 7   IPIEA-LSIEQAR-KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +P++   S+ +AR +EL  L   + YH   YY    P+I D+++D+  +    +   +P 
Sbjct: 74  VPVDTHASLPEARVRELRKL---LEYHAYRYYALDAPLITDNQFDSYLQELLHLEKTYPY 130

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L   +D +   ++IGG ++    +V H+    S++   N+E+L  ++ +          N
Sbjct: 131 L---DDEHSYTHRIGGYVSQQFRRVAHAQRMYSMDDAMNLEELDAWLEKTDEALGSSPSN 187

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------- 177
            + +T E KIDG  + + Y  G+ + AA RGDG  GEDV+A +  I  +P  L       
Sbjct: 188 PVAYTCELKIDGLGVALTYHNGQLLRAATRGDGSVGEDVTANVITIKDVPHTLLRDGLQK 247

Query: 178 --SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-- 233
             +      IEVRGEVY+ K+ F+ LN+     GR  +ANPRNAA+G LR+ N   IT  
Sbjct: 248 IANTGFGSDIEVRGEVYMPKHSFVRLNETADDEGRPTFANPRNAAAGSLRQKN-ARITAH 306

Query: 234 RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           R L  F++ L     +    Q + L  +   GF VN   ++      +  Y       RS
Sbjct: 307 RDLETFIYALASRESLDVHTQTDFLAWLSSCGFSVNPHAQRCVCAQEVHDYCARALKNRS 366

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
           +L YDIDG+V KVD F+ Q QLG  AR+PRW I+ KF  +Q  T L +I IQ+GRTG+LT
Sbjct: 367 SLDYDIDGVVVKVDSFAFQDQLGFTARAPRWAIAFKFPPEQKQTILREIRIQVGRTGVLT 426

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA  +PV + G+ I  ATLHN D ++            RD+RVGD ++V +AG+VIP+V
Sbjct: 427 PVAEFDPVLVAGSTIARATLHNIDEVR-----------RRDVRVGDTIVVHKAGDVIPEV 475

Query: 414 VDIIVN----ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           V  ++       H     +  P  CP C + VVR+ +        A+RC   L C AQ  
Sbjct: 476 VGPVLEGDLAALHFARPVWDMPQTCPACGASVVREDDE------VAYRCV-SLDCPAQAS 528

Query: 470 ERLKHFVSRDAFNIEGLGKQQL-----DFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-- 522
           +RL H+ SR A +I+GLG + +       + K     +      ++ +L   +   TT  
Sbjct: 529 QRLIHWCSRKAMDIDGLGSELITRLTEQGYVKDVADYYDKLSLENLSSLDTGRTYDTTNK 588

Query: 523 --KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
             K  + +  G    + +   +NK +   L R +F LGIRHVGA +A  +   Y   ++ 
Sbjct: 589 LHKQGDAIRVGKKIASKIIAQLNKSKQAGLARVLFGLGIRHVGASVAELIVATYPDLESL 648

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK----EVSPSI 636
            +   + IA           +  VG  IA ++V+F   P+N+   E L++     V  S 
Sbjct: 649 LRADKDEIA----------AIDGVGPKIAASLVDFLHMPQNM---EVLIRLQAAGVVLSA 695

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              +  +   +     V TGTL+ + R  A + +  LGA VS  +SRKT  +I G+  GS
Sbjct: 696 PEQKALLPQSLTGYTFVLTGTLEDLSRTAAGDALKALGAKVSGSVSRKTSFVIAGEQAGS 755

Query: 697 KLEKAQQLGVKIMNEEQF 714
           KL+KA++LGV ++  ++ 
Sbjct: 756 KLDKARELGVCVIGRKEL 773


>gi|237802575|ref|YP_002887769.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/Jali20/OT]
 gi|231273809|emb|CAX10593.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/Jali20/OT]
          Length = 663

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 234/704 (33%), Positives = 380/704 (53%), Gaps = 53/704 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75
           +R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S  P   L 
Sbjct: 5   SRDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           ++  G+  +    V HS P LS+  ++++++L +F +R     +K    S  ++LE KID
Sbjct: 65  DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S 
Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   ++   +  
Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +
Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDR 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+
Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS C
Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   
Sbjct: 404 PVCHEPVVKE--------KVSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+       I   +DIF L  +       ++ + GF D S+ NL  SI   + ++L+R +
Sbjct: 455 FE----VGLISSCSDIFALTEKD------LKQVPGFKDRSIQNLLASIAGAKKVTLDRLL 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +L I  VG+  A +LA ++ +       ++ +I  + D+   L+ +  +G  +A +IV 
Sbjct: 505 TALSIPFVGSSGAIALADHFGT-------LDKVIEASLDE---LMSIEGIGPKVAASIVA 554

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+    N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  LG
Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLG 613

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             VS+ +S+ T  +I G   G KL+KAQ LG+ I NE + L +L
Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLIIL 657


>gi|240168924|ref|ZP_04747583.1| NAD-dependent DNA ligase LigA [Mycobacterium kansasii ATCC 12478]
          Length = 683

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 228/706 (32%), Positives = 361/706 (51%), Gaps = 49/706 (6%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +++  H   YY    PII D+E+D L RR + +   +P+L     P+ P   +GG   
Sbjct: 8   LAEQVREHQFRYYVRDAPIITDAEFDELLRRLEVLEEQYPEL---RTPDSPTQLVGGAGF 64

Query: 84  LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
            + F+ V H    LSL+  ++  +L  +  R++    +  D + + T E KIDG  +++ 
Sbjct: 65  ATEFEPVEHLERMLSLDNAFSAAELAAWAARVH---AEVGDAASYLT-ELKIDGVALSLV 120

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKNDF 198
           Y++G+   A+ RGDG +GEDV+   R I  +P  LS +    +PE++EVRGEV+    DF
Sbjct: 121 YQQGRLTRASTRGDGRTGEDVTLNARTIDDVPERLSPSDDYPVPEVLEVRGEVFFRVADF 180

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
            ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG T        ++ 
Sbjct: 181 QALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTQGFRPASLHQA 240

Query: 258 LQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
              +R  G PV+      N   G+   + Y+ E    R  + ++IDG+V KVDE +LQ++
Sbjct: 241 YLALRAWGLPVSEHTTLVNDMAGVQERIDYWGEH---RHEVDHEIDGVVIKVDEVALQRR 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  ATLH
Sbjct: 298 LGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVAQATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K         R G  + +GD V++++AG+VIP+V+  +V+ R    + F  P+ C
Sbjct: 358 NASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTC 406

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +  +   K G   A  RC     C AQ  ER+ H  SR A +IE LG +     
Sbjct: 407 PECGTVLAPE---KEGD--ADIRCPNSQRCPAQLRERVFHVASRSALDIEVLGYEAAVAL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +    A  I    D+F L       T       G    +   L  +++K +   L R +
Sbjct: 462 LQ----AGVIASEGDLFALTEDDLLRTELFRTKAGGLSANGKRLLANLDKAKAAPLWRVL 517

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +L IRHVG   AR+LA  + + +  A          N     L  V  VG  IA A+ E
Sbjct: 518 VALSIRHVGPTAARALATEFGTLEAIA----------NASTEQLAAVEGVGPTIAAAVSE 567

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++    +   V+             +++V   +    +V TG+L    R +A+E +   G
Sbjct: 568 WFTVDWHREIVDKWRAAGVRMADERDESVPRTLAGLTVVVTGSLAGFSRDEAKEAIVARG 627

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              +  +S+KT  ++ GD+PGSK +KA +LGV I++E+ F  LL Q
Sbjct: 628 GKAAGSVSKKTSYVVAGDSPGSKYDKAVELGVPILDEDGFRELLAQ 673


>gi|159904348|ref|YP_001551692.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
           9211]
 gi|254781392|sp|A9BDC5|DNLJ_PROM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|159889524|gb|ABX09738.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Prochlorococcus marinus str. MIT 9211]
          Length = 697

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 231/735 (31%), Positives = 384/735 (52%), Gaps = 66/735 (8%)

Query: 14  IEQARKELS----SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +EQ    LS     L + ++  +  YY    P++ D+ YD L R    I    P L  ++
Sbjct: 1   MEQNSSNLSKRSFELRKLLNRANHAYYVLDTPLMEDTVYDRLYRELLNIEKNHPSLITAD 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----N 124
            P+    ++G        KV H IP +SL+  +N E+L+ +  RI +   +K++      
Sbjct: 61  SPS---QRLGSTPAKEFVKVEHKIPLMSLDNAFNFEELQDWDLRIRKLLNQKNNFGILKT 117

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPE 183
           SI F  E KIDG+ + + Y  G  V AA RGDG +GE+++A ++ I +IP  L + N P 
Sbjct: 118 SIDFACELKIDGSALALSYANGVLVQAATRGDGVAGEEITANVKTITSIPLSLDIENPPS 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242
            +EVRGE ++ K  F  +N          +ANPRNA +G LR+L+P  + +R L+FF + 
Sbjct: 178 WLEVRGEAFLPKQTFDGINLLRKQQREALFANPRNACAGTLRQLDPQIVASRQLDFFAYK 237

Query: 243 LGKTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           +    +   +G        Q   L+ ++  GF VN   +   + H + S+++  +  R  
Sbjct: 238 MYLPKDWDPQGENIHQPEAQDAALKWLKKAGFKVNPNTKIFKSLHEVQSFFDIWEKKRHK 297

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPY  DG+V KV+ F LQ+ LG   +SPRW I+ K+  ++A T+L+++  Q+GRTG +TP
Sbjct: 298 LPYTTDGVVVKVNNFKLQEMLGVTQKSPRWAIALKYPAEEAPTKLINLSYQVGRTGTVTP 357

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA  EP+ + G ++  ATLHN D ++ LD   +           D ++V++AGE+IP+VV
Sbjct: 358 VAEFEPIPLAGTIVRKATLHNADRLQSLDLHNE-----------DTIVVRKAGEIIPEVV 406

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            ++   R  ++     PS CP C  ++VR      G   AA +C   L C A     L+H
Sbjct: 407 CVLKELRPQNSTRLYLPSNCPECDEKLVR------GTDQAATKCVNNL-CPAIIQGALRH 459

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           +VS+ A NI+G+G + ++      +      IP D++ L  +      ++      G+ S
Sbjct: 460 WVSKKAMNIDGVGSKVIEQLV---NKGIVKSIP-DLYELNYQMLFGLERM------GEKS 509

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              + +SI K +     + ++ LGI H+G   A+ LA  + S    +       A N+ +
Sbjct: 510 AHKVIESIEKSKTQPWNKQLYGLGILHIGEGNAKLLANAFASEDELSH-----AAINSPE 564

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQ---NPRNICAVEAL---LKEVSPSIGRHEKNVSS--- 645
              + ++  +G+ + +++ E+++   N R I  ++ L   LK  +   G  +  ++S   
Sbjct: 565 --RIAKIHGIGNEMVESLQEWFEDESNQRIISRLKELGVQLKSTANDSGAIKSVINSSNK 622

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
           E+  K+ V TGT++ I R  AQE + + G  V++ +S KT  +I G NPGSKL KA++LG
Sbjct: 623 EVLGKRFVLTGTMESINRDVAQEMIEKAGGKVNSSISSKTTYLITGSNPGSKLSKAKELG 682

Query: 706 VKIMNEEQFLFLLQQ 720
           +KI+NEE F  LL +
Sbjct: 683 IKIINEEDFFNLLSK 697


>gi|329667842|gb|AEB93790.1| NAD-dependent DNA ligase [Lactobacillus johnsonii DPC 6026]
          Length = 668

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 224/722 (31%), Positives = 378/722 (52%), Gaps = 70/722 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  +A +++  L +++    D YY    P++ D+ YD   +    +   FPDL  +   
Sbjct: 4   LTHNEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTA--- 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N    ++GGE+   L KV H +P LS+  +++ E+L++F  RI +       + + + +E
Sbjct: 61  NSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKEELKEFDERITKLV----GHPVAYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYTNGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G + +ANPRNAA+G LR+L+   IT  R L+ F++        
Sbjct: 175 YMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPRN 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +++
Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DY++            + +R+GD V + +AG++IP++  +++++R  D++P+ 
Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487
            P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG  
Sbjct: 402 IPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGPR 454

Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             KQ +D  F        I   AD++ L   Q      +  +  F + S+TNL  SI   
Sbjct: 455 IVKQLIDKGF--------INDVADLYHLTPDQ------LGQLDHFKEKSITNLLSSIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  S E  ++ LGI HVGA+ AR + + Y + +  +Q               L  +  +G
Sbjct: 501 KQNSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658
           + IA+++  ++  P    + + LL+E+  S      +G  E+       + K +V TG L
Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               R +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +
Sbjct: 607 SAFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666

Query: 719 QQ 720
           ++
Sbjct: 667 EK 668


>gi|311086964|gb|ADP67044.1| DNA ligase (NAD+) [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 678

 Score =  350 bits (898), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 237/721 (32%), Positives = 387/721 (53%), Gaps = 67/721 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE+ RK L  L+ E  YH       ++ II D+EYD L R+   +     +L  S+ P  
Sbjct: 8   IEKLRKIL--LKYEYFYH-----TLNQSIISDAEYDYLFRQLYELELKNKELIPSDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              K+G  +     K+ H  P LSLE  +++     F  RI +     ++  + F  E K
Sbjct: 60  --QKVGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSIH--NNEPLSFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  I+I YE+G FV AA RGDG  GE++++  R I +IP ++  ++IP+ +E+RGEV+
Sbjct: 116 LDGVAISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K++F+ LN +      K ++NPRNAA+G LR ++P +IT  R L F  HG     + F
Sbjct: 176 MLKSNFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDP-NITAERKLIFSCHG----CDFF 230

Query: 251 AKGQYEMLQK----MRCL--GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            K   E+       M+CL  G PVN  +   ++   I+ +Y ++   R+ L +DIDG+V 
Sbjct: 231 VKTNKELTTHYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVI 290

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+   LQK++G   +SPRW I+ KF+ K+  T L D+  Q+GRTG++TPVA   PV I 
Sbjct: 291 KVNSLELQKKIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYIS 350

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +I+ A+LHN++ I+ L           ++   D + + R+G+VIP+++++I   R  +
Sbjct: 351 GVMISKASLHNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDN 399

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+   FPSFCP+C + ++ ++  K        RC  GL C AQ+ + L HF S+ +  + 
Sbjct: 400 AKKIIFPSFCPVCNTELLENIEEK------LIRCHSGLTCDAQKKQALYHFFSKKSLYVV 453

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + ++   +       ++ P D F L   +     +++N+   G      + +SI K
Sbjct: 454 GLGPKIINELVEKG----LVKNPIDFFYL---KDIDLIQLKNV---GKRKSIKIINSIKK 503

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L+ FI++LGI  VG  +A  +A Y++                N + L L  +  V
Sbjct: 504 CKKTTLKCFIYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGV 553

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSE---IENKKLVFTGTLQK 660
           G II+  I  ++    N   V  L+K+    +   E   ++SE     NKK+V TG  + 
Sbjct: 554 GKIISNNIFNYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKS 613

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R + +  +  LGA +S  +SRKTD +I G+N GSK  +A+ L VKI+N+E+   L+++
Sbjct: 614 FSRIELKTILLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLIRK 673

Query: 721 Y 721
           +
Sbjct: 674 F 674


>gi|317125504|ref|YP_004099616.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043]
 gi|315589592|gb|ADU48889.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043]
          Length = 715

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 235/744 (31%), Positives = 375/744 (50%), Gaps = 76/744 (10%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE    ++   E + L +  S     Y+    P I D+EYD L RR +A+   +P L   
Sbjct: 10  IEDAIPDEVHHEWADLAERASAAQFAYHVKDAPTISDAEYDGLIRRLNALEAQWPSL--- 66

Query: 69  EDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
             P+ P  K+G     + F+ V H    LSL+  ++ E+LR +  R+    +++      
Sbjct: 67  RTPDSPTQKVGASAFATGFETVDHLERMLSLDNAFSFEELRAWAERV----EREVGAGAH 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           F  E KIDG  + + YE+G+ V A  RGDG +GEDV+  +R I  +P  LS + +PE++E
Sbjct: 123 FLTELKIDGLAVNLLYEQGRLVRALTRGDGRTGEDVTNNVRTIEGVPERLSGDDVPELVE 182

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           +RGEV+     F  LN  ++A G+ P+ANPRNAA+G LR+ +P     R L   VHG+G 
Sbjct: 183 IRGEVFFPTAGFADLNAALVAAGKAPFANPRNAAAGSLRQKDPKVTAGRPLRLLVHGIGA 242

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q E    +R  G P ++ V+  +    +  +       R    ++IDG+V K
Sbjct: 243 RRGFDIARQSEGYAALRSWGLPTSDQVKVLDDIADVEEFVTFHGEHRHDGLHEIDGIVVK 302

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VDE +LQ+QLG  +R+PRW I+ K+  ++ +TRLLDI + +GRTG +TP   ++PV + G
Sbjct: 303 VDEVTLQRQLGATSRAPRWAIAFKYPPEEVNTRLLDIRVNVGRTGRVTPYGVMQPVVVAG 362

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN+          +V R G  + +GD V++++AG+VIP++V  +V+ R    
Sbjct: 363 STVEQATLHNQH---------EVERKG--VLIGDTVVLRKAGDVIPEIVGPVVDLRDGSE 411

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF  P+ CP C +++  +   K G      RC    +C +Q  ER+    SR A +IE 
Sbjct: 412 RPFVMPTQCPSCGTQLAPE---KEGD--KDIRCPNSRSCPSQLRERVFALASRSALDIEA 466

Query: 486 LGKQ-------------QLDFFFKSEDP----AFSI---RIPADIFTLQRRQQTSTTKIE 525
           LG +             + D F   ED     A+ +   R+ A    L  R    T    
Sbjct: 467 LGWEGSIALLESGILTDEGDLFAPPEDSPEAGAYGVTRERLAA--VGLYTRAAKRTDDPA 524

Query: 526 NILGFGDVSVTN---LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
           +++  G V   N   L   + K +   L R + +L IRHVG   AR+LA  + S     +
Sbjct: 525 HVVD-GRVLSANGEKLLAELEKAKTQPLWRVLVALSIRHVGPTAARALATTFGSMDAIRR 583

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY------QNPRNICAVEALLK-EVSPS 635
                +A              VG IIA+++  ++      +  R   A    ++ EV  S
Sbjct: 584 ASIEELAEAEG----------VGQIIAESVTAWFAVDWHAEIVRKWAAARVRMEDEVDAS 633

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
           + R        +E + +V TG+L+   R + +E +   G   +  +SRKTD ++VG N G
Sbjct: 634 VAR-------TLEGRTVVVTGSLEGFSRDETKEAILSRGGKAAGSVSRKTDWVVVGANAG 686

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK  KA++LG+++++E QF+ LL+
Sbjct: 687 SKAAKAEELGLRVLDEAQFVRLLE 710


>gi|108798849|ref|YP_639046.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. MCS]
 gi|119867964|ref|YP_937916.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. KMS]
 gi|126434449|ref|YP_001070140.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. JLS]
 gi|123369452|sp|Q1BAU4|DNLJ_MYCSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216212|sp|A3PXM2|DNLJ_MYCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216213|sp|A1UE68|DNLJ_MYCSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|108769268|gb|ABG07990.1| DNA ligase, NAD-dependent [Mycobacterium sp. MCS]
 gi|119694053|gb|ABL91126.1| DNA ligase, NAD-dependent [Mycobacterium sp. KMS]
 gi|126234249|gb|ABN97649.1| DNA ligase, NAD-dependent [Mycobacterium sp. JLS]
          Length = 701

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 231/716 (32%), Positives = 368/716 (51%), Gaps = 59/716 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R    +L  E+  H   YY    P+I D+++D L ++ +A+    P+L     P+ P   
Sbjct: 23  RHRWQALADEVRDHQFRYYVRDAPVISDADFDKLFQQLEALEAEHPEL---RAPDSPTQL 79

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +GG    + F    H    LSL+ ++N+++L  + +R+    +  DD +  +  E K+DG
Sbjct: 80  VGGAGFATDFTPAEHLERMLSLDDVFNVDELTAWSSRVRA--EVGDDAA--YLCELKVDG 135

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVY 192
             + + Y  G+   AA RGDG  GEDV+   R +  +P  L+       P ++EVRGEV+
Sbjct: 136 LALALVYRDGRLERAATRGDGRVGEDVTLNARTLDDVPERLTPSDEFPHPAVLEVRGEVF 195

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251
               DF ALN  ++A G+ P+ANPRN+A+G LR+ NP    R  L    HG+G T     
Sbjct: 196 FRVADFEALNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRPLRMVCHGIGYTEGFSP 255

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              +E    +R  G PV++   +      +   ++Y+ E    R  + ++IDG+V K+D+
Sbjct: 256 TSLHEAYGALRAWGLPVSDHTTRVQGMDAVRERIAYWGEH---RHDIEHEIDGVVVKLDQ 312

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP A +EPV + G+ +
Sbjct: 313 IALQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAYMEPVKVAGSTV 372

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN   +K         R G  + +GD V++++AG+VIP+V+  +V+ R    + F
Sbjct: 373 GLATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGTEREF 421

Query: 429 SFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             P+ CP C +    +L P K G   A  RC     C AQ  ER+ H   R AF+IEGLG
Sbjct: 422 VMPTHCPECGT----ELAPAKEGD--ADIRCPNSRTCPAQLRERVFHVAGRGAFDIEGLG 475

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQR----RQQTSTTKIENILGFGDVSVTNLYDSIN 543
            +      +    A  I    D+FTL      R +  TTK   +   G   + NL     
Sbjct: 476 YEAAIALLQ----AGVITDEGDLFTLTEDDLLRTELFTTKGGAVSANGRRLLANL----G 527

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +   L R + +L IRHVG   AR+LA  + S       ++ II  + D    L  V  
Sbjct: 528 KAKAQPLWRVLVALSIRHVGPTAARALATEFGS-------LDAIIEASED---QLAAVEG 577

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG  IA A+ E++    +   VE             + +++  +E   +V TG+L    R
Sbjct: 578 VGPTIAAAVKEWFTVDWHCAIVEKWRAAGVRMADERDASIARTLEGLSIVVTGSLAGFSR 637

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +   G   +  +S+KT  ++ GD+PGSK +KA  LGV +++E+ F  LL+
Sbjct: 638 DEAKEAIIARGGKAAGSVSKKTAYVVAGDSPGSKYDKAIDLGVPVLDEDGFRNLLE 693


>gi|297566494|ref|YP_003685466.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946]
 gi|296850943|gb|ADH63958.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946]
          Length = 670

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 229/712 (32%), Positives = 373/712 (52%), Gaps = 55/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +A++ +  L +EI YH+  YY    P+I D+EYD L R    +   +P+L     P+ 
Sbjct: 8   LTEAQRRIHQLREEIRYHNYRYYVLDDPVISDAEYDRLLRELKELEARYPELV---TPDS 64

Query: 74  PLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P   +G G++  S   + H  P  SL+  +  ED+R F  RI R           + LE 
Sbjct: 65  PTQTVGPGKIETSFAAIPHPTPLYSLDNAFGPEDIRLFEERIARSLGMP--APFPYVLEY 122

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  + + YE+G  ++ A RG+G  GEDV+  + A+  IP  + +  P  +EVRGEVY
Sbjct: 123 KIDGLSVNLYYEEGTLLWGATRGNGQVGEDVTPNLMAVEGIPHRV-VGAPPRLEVRGEVY 181

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG-KTSEIF 250
           +    FL +N E+   G  P+ NPRNAA+G LR+ +P     R L   ++ +G   +E  
Sbjct: 182 LPIETFLKVNAELEEQGLPPFKNPRNAAAGSLRQKDPRVTAKRGLKAVLYSIGLGLAESE 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q E+L+ ++ LGF +    ++A  +  +   Y  M + R  LPY+ DG+V K+D+  
Sbjct: 242 VRSQSELLEYLKHLGFAIEPHYQKAVGWRAVEETYQRMLAKRRQLPYEADGVVVKLDDIR 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  ++SPRW I++KF  ++  TR++ ++  +GRTG +TPVA LEPV+I G+ ++ 
Sbjct: 302 LQADLGFTSKSPRWAIAYKFPAEEKITRVVGVEFTVGRTGRITPVANLEPVDIEGSTVSR 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
             LHN+ Y++ L           D+  GD+VL+ +AG VIP+V+ +I   R   A   ++
Sbjct: 362 VVLHNQSYLEEL-----------DLHYGDQVLIHKAGGVIPEVLRVIPEARPKGAVKVTY 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +V +     GK+   H C   L C A+  E + H+ SR A +I+GLG++ 
Sbjct: 411 PTRCPECGTPLVLE-----GKI---HLCPNPL-CPAKAYEAILHYASRGAMDIQGLGEKL 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            +R P+D++ L + Q     ++      G+ S  NL D I   +   L
Sbjct: 462 VAKLLAE----GLVRDPSDLYKLTKEQLMGLERM------GEKSAQNLIDQIEASKGRGL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F+LGI  VGA +AR+LA+ +         ++ ++A +  D         V D+   
Sbjct: 512 ERLLFALGIPQVGAALARTLARRF-------GHLDRLLAASVQDLDE------VEDVALP 558

Query: 611 AIVEFYQ--NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
                YQ  + +++ A    L+    S    EK     ++    V TG L +  R +   
Sbjct: 559 TAERIYQTLHQKDMRAYIERLRAAGVSFEAKEKPQGDRLKGLTFVLTGELSR-PREEILR 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LGA VS+ +S+KT  ++ G+  GSKL+KA++LGV +++E     LL +
Sbjct: 618 RLEALGAKVSSSVSKKTSYVVAGEGAGSKLQKARELGVPVLDEAGLEALLSR 669


>gi|255521025|ref|ZP_05388262.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-175]
          Length = 550

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 212/580 (36%), Positives = 318/580 (54%), Gaps = 54/580 (9%)

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F  LN+  
Sbjct: 4   GKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSFQKLNEIR 61

Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
              G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +     L  +  L
Sbjct: 62  EEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLETL 121

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G   +SPRW
Sbjct: 122 GLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGNTVKSPRW 181

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNED I     
Sbjct: 182 SIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNEDLIT---- 237

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP C S +VR 
Sbjct: 238 -------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPACDSELVR- 289

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
           L  +      A RC     C AQ  E L HFVSR+A NI+GLG++ +   F        I
Sbjct: 290 LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQ----HLI 339

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           +  AD+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F LGIRHVGA
Sbjct: 340 KDVADLFFL------SKEKLLELERMGEKSVTNLLASIQASKQNSLEKLLFGLGIRHVGA 393

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
           + A+SLA ++ +  N        +   ND          +G+ +A +IV ++ N      
Sbjct: 394 KAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYFANEE---- 439

Query: 625 VEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           V  LL+E+  +       G   +++S E      K +V TG L+K+ R+ A+  +  LG 
Sbjct: 440 VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIESLGG 499

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            VS  +S+KTD+++ G + GSKL KA++L + I +EE  +
Sbjct: 500 NVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLI 539


>gi|313207091|ref|YP_004046268.1| DNA ligase, naD-dependent [Riemerella anatipestifer DSM 15868]
 gi|312446407|gb|ADQ82762.1| DNA ligase, NAD-dependent [Riemerella anatipestifer DSM 15868]
 gi|315022511|gb|EFT35538.1| DNA ligase [Riemerella anatipestifer RA-YM]
          Length = 669

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 220/712 (30%), Positives = 361/712 (50%), Gaps = 50/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S++  + ++  L +E+  H+  YY    P I D E+D +      +  A+P+ A   D 
Sbjct: 1   MSLDDIKHKIEELREELHQHNYNYYVLDTPSISDYEFDMMLEELKELELAYPEFA---DN 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG +  +   V H     SL+  +N EDL  +  R+ +     D   I +  E
Sbjct: 58  NSPTQRVGGNITKNFPTVEHRHRMYSLDNSYNFEDLSDWQNRLIKSL---DTTDIEYVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I+I YE G F  A  RGDG  G++++A ++ I  IP  +    P    +RGE+
Sbjct: 115 LKYDGASISILYENGAFKQAITRGDGFQGDEITANVKTISDIPLKIKGEYPNTFYIRGEI 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y++K  F  +N      G   + NPRN ASG L+  + T++  R L+  ++ +    +  
Sbjct: 175 YLTKKHFNLINKAREKEGLDLFMNPRNTASGSLKMQDSTEVRKRKLSAVLYQV-VAEDTP 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K  +E+L++ +  GF  +   +       +  + +     R  L ++IDG+V KV+  +
Sbjct: 234 VKTHWELLEQTKDWGFKTSQQAKLCKNLDEVKDFIDYWDKERQHLDFEIDGIVIKVNNLN 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  A+SPRW ++HKF  ++  T+L  I  Q+GRTG +TPVA L+PV + G ++  
Sbjct: 294 QQQLLGYTAKSPRWAMAHKFKAEKVETQLESISYQVGRTGTITPVANLKPVLLAGTIVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+ L           ++   D V V++ GE+IPK+V +   +R P+A   ++
Sbjct: 354 ASLHNEDIIRKL-----------NLHTQDFVYVEKGGEIIPKIVGVNKEKRLPNATLVAY 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            S CP C   +VR+         AAH C     C  Q + ++ H+VSR A NIE LG + 
Sbjct: 403 ISHCPECHMPLVRNEGE------AAHFCPNETHCPPQVIGKMIHYVSRKALNIENLGSET 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F+       I   AD +TL + Q     ++       + S  N+ D I K + I  
Sbjct: 457 IEQLFREG----LISNIADFYTLTKEQLLPLDRM------AEKSAQNILDGIEKSKQIPF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGI+HVG  +A+ L K + +     +               L  V  VG  IA+
Sbjct: 507 EKVLFGLGIKHVGETVAKKLVKNFHTIDGLKKAT----------LEELTEVEDVGIKIAE 556

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQ 667
           ++V ++QN  NI  ++  LK     + + E     VS+ +E K  +FTG L    R +A+
Sbjct: 557 SLVNYFQNEENIEILDR-LKSYGIQLEQEENTSAKVSNALEGKTFLFTGKLSLFTREQAE 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLL 718
           E V + G    + +S+  + ++VG+  GSKL+KAQ L  V I++E++FL L+
Sbjct: 616 EMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQTLSTVTILDEQEFLDLI 667


>gi|268319976|ref|YP_003293632.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785]
 gi|262398351|emb|CAX67365.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785]
          Length = 668

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 223/722 (30%), Positives = 379/722 (52%), Gaps = 70/722 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  +A +++  L +++    D YY    P++ D+ YD   +    +   FPDL  ++  
Sbjct: 4   LTHSEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTADSI 63

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       + + + +E
Sbjct: 64  T---QRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLV----GHPVAYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y KGK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYTKGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G + +ANPRNAA+G LR+L+   IT  R L+ F++        
Sbjct: 175 YMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPRN 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +++
Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DY++            + +R+GD V + +AG++IP++  +++++R  D++P+ 
Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487
            P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG  
Sbjct: 402 IPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGPR 454

Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             KQ +D  F        I   AD++ L   Q      +  +  F + S+TNL  SI   
Sbjct: 455 IVKQLIDKGF--------INDVADLYHLTPDQ------LGQLDHFKEKSITNLLSSIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  S E  ++ LGI HVGA+ AR + + Y + +  +Q               L  +  +G
Sbjct: 501 KQNSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658
           + IA+++  ++  P    + + LL+E+  S      +G  E+       + K +V TG L
Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               R +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +
Sbjct: 607 SAFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666

Query: 719 QQ 720
           ++
Sbjct: 667 EK 668


>gi|219681449|ref|YP_002467834.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471124|ref|ZP_05635123.1| DNA ligase (NAD+) [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|254781271|sp|B8D8M5|DNLJ_BUCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219624292|gb|ACL30447.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 675

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 240/729 (32%), Positives = 390/729 (53%), Gaps = 74/729 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE+ RK L  L+ E  YH       ++ II D+EYD L R+   +     +L  S+ P  
Sbjct: 8   IEKLRKIL--LKYEYFYH-----TLNQSIISDAEYDYLFRQLYELELKHKELIPSDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              K+G  +     K+ H  P LSLE  +++     F  RI +     ++  + F  E K
Sbjct: 60  --QKVGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSIH--NNEPLSFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  I+I YE+G FV AA RGDG  GE++++  R I +IP ++  ++IP+ +E+RGEV+
Sbjct: 116 LDGVAISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K++F+ LN +      K ++NPRNAA+G LR ++P +IT  R L F  HG     + F
Sbjct: 176 MLKSNFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDP-NITAERKLIFSCHG----CDFF 230

Query: 251 AKGQYEMLQK----MRCL--GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            K   E+       M+CL  G PVN  +   ++   I+ +Y ++   R+ L +DIDG+V 
Sbjct: 231 VKTNKELTTHYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVI 290

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+   LQK++G   +SPRW I+ KF+ K+  T L D+  Q+GRTG++TPVA   PV I 
Sbjct: 291 KVNSLELQKKIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYIS 350

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +I+ A+LHN++ I+ L           ++   D + + R+G+VIP+++++I   R  +
Sbjct: 351 GVMISKASLHNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDN 399

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+   FPSFCP+C + ++ ++     KL+   RC  GL C AQ+ + L HF S+ +  + 
Sbjct: 400 AKKIIFPSFCPVCNTELLENIEE---KLI---RCHSGLTCDAQKKQALYHFFSKKSLYVV 453

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + ++   +       ++ P D F L   +     +++N+   G      + +SI K
Sbjct: 454 GLGPKIINELVEKG----LVKNPIDFFYL---KDIDLIQLKNV---GKRKSIKIINSIKK 503

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L+ FI++LGI  VG  +A  +A Y++                N + L L  +  V
Sbjct: 504 CKKTTLKCFIYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGV 553

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSE---IENKKLVFTGTLQK 660
           G II+  I  ++    N   V  L+K+    +   E   ++SE     NKK+V TG  + 
Sbjct: 554 GKIISNNIFNYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKS 613

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R + +  +  LGA +S  +SRKTD +I G+N GSK  +A+ L VKI+N+E+       
Sbjct: 614 FSRIELKTILLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEEL------ 667

Query: 721 YNTTLRIHD 729
            N+ +RI +
Sbjct: 668 -NSLIRIKE 675


>gi|228476991|ref|ZP_04061629.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126]
 gi|228251010|gb|EEK10181.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126]
          Length = 652

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 225/705 (31%), Positives = 372/705 (52%), Gaps = 61/705 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L  +++ +   YY    P + D+EYD L R   A+   +P+  +++ P    +++
Sbjct: 3   KRMKELVVKLNQYAKEYYTEDNPSVSDAEYDKLYRELVALEAEYPEYVQADSPT---HRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+   +   D     +  E KIDG  
Sbjct: 60  GGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDQRVKAEFPNAD-----YMAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +F
Sbjct: 115 ISLTYVDGVLQVGATRGDGSIGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N +    G   +ANPRNAA+G LR+L+   +  R L  F++     +E     Q ++
Sbjct: 173 ERINIQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFLYQEASPTERLT--QNDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDDLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    LL +D Q+GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R    +P   P+ CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQ-EPMEVPTQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  FK+
Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFKA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     ++  ADI+ L      ++     + GF + S   LY +I   +  S E+ ++ L
Sbjct: 452 E----LVKDVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLYGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA++++ L + + S +  A          + D  ++  V  +G++IA++I  ++ 
Sbjct: 502 GIRHVGAKVSKQLLEAFGSIKELA----------SADVEAIAAVDGLGEVIAKSIQRYFA 551

Query: 618 NPRNICAVEALLKEVSP---SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQ 672
                   + LLKE+     ++    + V+ +  +  K +V TG L+ ++R +A+  +  
Sbjct: 552 KEE----AQVLLKELETYGVNLAYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEA 607

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           LGA V+  +S+KTD+++ G N GSKLEKAQ LG+++ +E   L L
Sbjct: 608 LGAKVTGSVSKKTDLVVAGSNAGSKLEKAQSLGIEVKDEAWLLDL 652


>gi|42519595|ref|NP_965525.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533]
 gi|81667534|sp|Q74I49|DNLJ_LACJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|41583884|gb|AAS09491.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533]
          Length = 668

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 223/722 (30%), Positives = 379/722 (52%), Gaps = 70/722 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  +A +++  L +++    D YY    P++ D+ YD   +    +   FPDL  ++  
Sbjct: 4   LTHNEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTADSI 63

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       +S+ + +E
Sbjct: 64  T---QRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLV----GHSVAYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYTDGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G + +ANPRNAA+G LR+L+   IT  R L+ F++        
Sbjct: 175 YMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPRN 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +++
Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DY++            + +R+GD V + +AG++IP++  +++++R  D++P+ 
Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487
            P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG  
Sbjct: 402 IPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGPR 454

Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             KQ +D  F        I   AD++ L   Q      +  +  F + S+TNL  SI   
Sbjct: 455 IVKQLIDKGF--------INDVADLYQLTPDQ------LGQLDHFKEKSITNLLSSIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  S E  ++ LGI HVGA+ AR + + Y + +  +Q               L  +  +G
Sbjct: 501 KQNSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658
           + IA+++  ++  P    + + LL+E+  S      +G  E+       + K +V TG L
Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               R +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +
Sbjct: 607 SAFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666

Query: 719 QQ 720
           ++
Sbjct: 667 EK 668


>gi|300858287|ref|YP_003783270.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685741|gb|ADK28663.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206007|gb|ADL10349.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
           C231]
 gi|302330560|gb|ADL20754.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
           1002]
 gi|308276242|gb|ADO26141.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
           I19]
          Length = 694

 Score =  349 bits (896), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 233/715 (32%), Positives = 362/715 (50%), Gaps = 62/715 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++   L +++ YH D YY    P I D ++DAL R    +    P+LA    P+ P  +
Sbjct: 25  RRQWDELAEQVRYHRDAYYN-DTPEISDQDFDALFRTLQKLEEEHPELAV---PDSPTLE 80

Query: 78  IGGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +G  + LS     V H    +SL+ +++  +L +        W ++     + T E KID
Sbjct: 81  VGAPVALSSSFNNVEHLERLMSLDNVFDAAELSE--------WLQRTPAQAYLT-ELKID 131

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEV 191
           G  + + Y  GK   AA RGDG  GEDV+   + I  +P  L  N    IPE++EVRGEV
Sbjct: 132 GLSLDLIYRDGKLWRAATRGDGRIGEDVTENAKVIADVPHRLKENAEFPIPELLEVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           +I+  DF A+N++    G KP+ANPRNAA+G LR+ +   +  R L    HGLG T    
Sbjct: 192 FIAVEDFAAVNEQRQLEGGKPFANPRNAAAGSLRQKDVEAVKKRRLRMICHGLGATQGFT 251

Query: 251 AKGQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              QY   + +   G PV+     V+ A      V Y+ E    R    +++DG+V KVD
Sbjct: 252 PASQYHAYEALAAWGLPVSPYTELVQSAAEVQEKVLYWAEH---RHDAAHEMDGVVVKVD 308

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             S Q+ LG  AR+PRW I++K+  ++ +T LLDI + +GRTG +TP A + PV + G+ 
Sbjct: 309 SISEQRALGATARAPRWAIAYKYPPEEVTTELLDIQVGVGRTGRVTPFAVMRPVFVAGST 368

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN+  +K         R G  + +GD V++++AGEVIP+V+  +V +R    + 
Sbjct: 369 VSMATLHNQTEVK---------RKG--VLIGDTVVIRKAGEVIPEVLGPVVEKRDGTERE 417

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP+ CP C +R    L P+  +  A  RC    +C AQ   RL +   R AF+IE LG
Sbjct: 418 FIFPTLCPSCGTR----LAPQK-EDDADWRCPNSQSCPAQLSTRLTYLAGRGAFDIEALG 472

Query: 488 KQQLDFFFKSE---DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           ++  +   ++    D A    +  +   L+ R  T+  K  N  G      + L  ++ +
Sbjct: 473 EKAAEDLIRTGVLIDEAGLFELTEEDL-LKTRVYTTKKKTLNATG------SKLLANLEQ 525

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +   L R + +L IRHVG   AR+LA  Y S     +     IA              V
Sbjct: 526 SKKADLWRVLVALSIRHVGPTAARALASRYHSMDALREASAEEIADTEG----------V 575

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G IIAQ+  ++++   +   VE   +          +     +    +V TG+L+   R 
Sbjct: 576 GAIIAQSFKDWFEVDWHAHIVEQWARAGVTMAEETSQLPEQTLAGMTVVVTGSLEGFSRD 635

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            A+E +   G   S  +S+KTD ++VG+N GSK  KA++LG+ I++E  F+ LL+
Sbjct: 636 SAKEAIISRGGKASTSVSKKTDYVVVGENAGSKETKARELGLTILDESGFIRLLE 690


>gi|269119219|ref|YP_003307396.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386]
 gi|268613097|gb|ACZ07465.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386]
          Length = 669

 Score =  349 bits (896), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 225/708 (31%), Positives = 375/708 (52%), Gaps = 49/708 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E   I++  +EL  L   I  +++ YY+ ++ ++ D EYD L +  ++I   +P+L   
Sbjct: 1   MEQTGIKKRYEELKDL---IRKYNEHYYEKNESLVTDYEYDMLLKEMESIEKEYPEL--- 54

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +D      K+GG  +    KV H +P LSL   +NI ++  F  RI +     +D  I +
Sbjct: 55  KDTVSVTEKVGGRASGKFSKVVHKVPMLSLSNTYNIGEIEDFDKRIKKVIG--EDQKIEY 112

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            LE K+DG  I+I+YE G+ V    RGDG  GEDV+  I  I +IP++L    P  +EVR
Sbjct: 113 VLELKLDGLSISIQYENGRLVRGITRGDGEIGEDVTENIMQIDSIPQILKE--PVTLEVR 170

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE+ +  ++F  +N      G   +ANPRNAASG +R+L  + +  R L+ +++ L    
Sbjct: 171 GEIVLPISNFNKVNKMREEAGEDVFANPRNAASGTIRQLESSIVKDRGLDCYLYFLVNAQ 230

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +   + ++ +  LGF           F  +     +    R  L ++ DGLV K+D
Sbjct: 231 NYNLQKHSDSIKYLEKLGFKTTKVFEIYKDFSLLEKAIEKWHVERERLDFETDGLVIKLD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           EF+    LG   +SPRW I++KF  ++A T+LLDI  Q+GRTG++TPVA LEPV + G++
Sbjct: 291 EFAYYSALGSTTKSPRWAIAYKFPAEKAKTKLLDITFQVGRTGVITPVAELEPVELSGSV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN D IK            +DI++GD V +++A E+IP+V++ +++ER    + 
Sbjct: 351 VRRASLHNFDEIK-----------RKDIKIGDFVYIEKAAEIIPQVIEPVISERTGSEKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C  ++++  +        A +C    AC      ++++FVSRDA NI GLG
Sbjct: 400 IEMPESCPSCGHKLIKIEDQ------VAIKCINP-ACPEIIKRKIEYFVSRDAMNITGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++ F +       I+   DI++L   ++    ++E +   G  SV NL +SI + + 
Sbjct: 453 EKIIEKFIE----LGKIKDIVDIYSLHEYRE----ELEKLEKMGKKSVDNLLNSIEESKK 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               + ++SLGI  VG   A  LAK +L+       I+N+ +   +D   L+ V  +GD 
Sbjct: 505 REYSKVLYSLGIPFVGKFTANLLAKEFLN-------IDNLKSKETED---LLEVKGIGDK 554

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKA 666
           +A+++  F  +  N   + + LKE        E  +    I+ K  + TG L+K  R + 
Sbjct: 555 VAKSVNMFLNDENNWNLI-SKLKETGLQFEEEEVFIEDNPIKGKTFLATGKLEKYTRDEI 613

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           ++ +   G    + +S+  + +I G+  GSKL+KA  LGV ++NEEQF
Sbjct: 614 KDIIEAKGGKYLSGVSKNLNYLIAGEKAGSKLKKANDLGVIVLNEEQF 661


>gi|166216285|sp|Q03JF6|DNLJ_STRTD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 652

 Score =  349 bits (896), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 228/708 (32%), Positives = 372/708 (52%), Gaps = 67/708 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L  +++ +   YY    P + D+EYD L R    +    P+L +++ P    +++
Sbjct: 3   KRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPT---HRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  RI   +   D     +  E KIDG  
Sbjct: 60  GGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRIKSEFPNAD-----YMAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +F
Sbjct: 115 ISLTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYE 256
             +N +    G   +ANPRNAA+G LR+L+   +   R   FF    G T  +    Q +
Sbjct: 173 ERINTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERLT---QND 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++   +LL +D Q+GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R   +A P   PS CP
Sbjct: 350 DYIT-----------EKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQEAMP--VPSQCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  F
Sbjct: 397 SCGSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K+E     ++  ADI+ L      ++     + GF + S   LY +I   +  S E+ ++
Sbjct: 450 KAE----LVKEVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLY 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRHVGA++++ L + + + +  A          + D  ++  V  +G++IA++I  +
Sbjct: 500 GLGIRHVGAKVSKQLLESFGTIKELA----------SADVQAIAAVDGLGEVIAKSIQRY 549

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEY 669
           +         + LLKE+  S G +   +  ++ +      K +V TG L+ ++R +A+  
Sbjct: 550 FAKEE----AQVLLKELE-SYGVNLSYLGQKVTDDAILSGKTVVLTGKLEHLKRSEAKAK 604

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  LGA V+  +S+KTD+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 605 LEALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652


>gi|87301433|ref|ZP_01084273.1| DNA ligase [Synechococcus sp. WH 5701]
 gi|87283650|gb|EAQ75604.1| DNA ligase [Synechococcus sp. WH 5701]
          Length = 698

 Score =  349 bits (896), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 225/723 (31%), Positives = 358/723 (49%), Gaps = 75/723 (10%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P + D+ YD L R  + +    P+L     P+ P  ++GG        V H I
Sbjct: 18  AYYVLDSPEMEDAVYDRLYRELEQLERLHPELI---SPDSPTRRVGGSPAEGFQAVRHRI 74

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEPKIDGTMITIRYEKGKF 148
             LSLE  ++IE+L  +  R+ +   +         ++    E KIDG  + + YE G  
Sbjct: 75  GLLSLENAFSIEELEAWYGRLLKVLDRSAPPGEALPALPMVGELKIDGNALALSYEHGLL 134

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG SGE+++A +R I ++P R+L  + PE +EVRGE  I    F  +N E   
Sbjct: 135 VRAATRGDGESGEEITANVRTIQSVPLRLLLEDPPEWVEVRGEALIPDGTFAEINAERAG 194

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL----------GKTSEIFAKGQYE 256
            G   +ANPRNA +G LR+L+P  +  R L+FF + L          G       + Q+E
Sbjct: 195 RGEPLFANPRNACAGTLRQLDPQVVAARRLDFFAYTLHLPDDWRPAPGSGDPGRPRSQWE 254

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +   GF VN           + +++   +  R  LPY  DG+V K+D+  LQ   G
Sbjct: 255 SLRWLAAAGFRVNPNAALCPDLAAVEAFFAAWEHKRRDLPYATDGVVVKLDDLRLQADAG 314

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I+ K+A ++A +RLL +  Q+GRTG++TPVA  EPV + G  ++ ATLHN 
Sbjct: 315 FTQKAPRWAIALKYAAEEAPSRLLRLVAQVGRTGVVTPVAEFEPVPLAGTSVSRATLHNA 374

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D +  L           D+  GD ++V++AGE+IP+VV ++   R P A P   PS CP 
Sbjct: 375 DRLAEL-----------DLHAGDTIVVRKAGEIIPEVVRVLAELRPPGAAPLQLPSSCPE 423

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR+     G+  AA RC    +C A     L+H+VS+ A +++GLG + ++    
Sbjct: 424 CGSALVRE----EGE--AATRCVNS-SCPAILRGALRHWVSKGAMDVDGLGAKLVEQLVD 476

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +R  AD++ L      S  ++      G+ S  NL +++   +     R ++ 
Sbjct: 477 R----GLVRSIADLYRLDAALLASLERM------GETSAANLVEALEASKQQPWHRQLYG 526

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI HVGA  A++LA+ + S +        + A    + ++ +    +G  IA+++ +++
Sbjct: 527 LGIHHVGAVNAKALARAFPSAETL-----GMAAAEQPEVITAVFG--IGGEIAESLRQWF 579

Query: 617 QNPRNICAVEALLKEVSPSIG---------------RHEKNVSSEIENKKLVFTGTLQKI 661
               N     ALL E+  ++G                     +  +  +  V TGTL  +
Sbjct: 580 ATAAN----GALLAELQ-ALGIPLAAAEREQGVEGEGGGPGGAGHLSGQTFVLTGTLPSL 634

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +AQ  +   G  VS  +S+KT  ++ G   GSKL KA+ LGV +++EE    LL++ 
Sbjct: 635 SRSQAQALIEAAGGKVSGSVSKKTSYVVAGAEAGSKLTKAEALGVAVLDEEGLRALLEEL 694

Query: 722 NTT 724
             T
Sbjct: 695 EGT 697


>gi|15604865|ref|NP_219649.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D/UW-3/CX]
 gi|7673995|sp|O84148|DNLJ_CHLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3328547|gb|AAC67737.1| DNA Ligase [Chlamydia trachomatis D/UW-3/CX]
 gi|289525187|emb|CBJ14662.1| NAD-dependent DNA ligase [Chlamydia trachomatis Sweden2]
 gi|297748276|gb|ADI50822.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-EC]
 gi|297749156|gb|ADI51834.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-LC]
          Length = 663

 Score =  349 bits (896), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 234/704 (33%), Positives = 380/704 (53%), Gaps = 53/704 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75
           +R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S  P   L 
Sbjct: 5   SRDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           ++  G+  +    V HS P LS+  ++++++L +F +R     +K    S  ++LE KID
Sbjct: 65  DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S 
Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   ++   +  
Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +
Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQDVVERIREIEEMRAALPMAIDGVVIKVDNIAYQDR 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+
Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS C
Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   
Sbjct: 404 PVCHEPVVKE--------KVSVRCVNPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+       I   +DIF L      +   ++ + GF D S+ NL  SI   + ++L+R +
Sbjct: 455 FE----VGLISSCSDIFAL------AEEDLKQVPGFKDRSIQNLLASIAGAKKVALDRLL 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +L I  VG+  A +LA ++ +       ++ +I  + D+ +S   +  +G  +A +IV 
Sbjct: 505 TALSIPFVGSSGAIALADHFGT-------LDKVIEASLDELMS---IEGIGPKVAASIVA 554

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+    N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  LG
Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRCLG 613

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             VS+ +S+ T  +I G   G KL+KAQ LG+ I NE + L +L
Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRIL 657


>gi|157150014|ref|YP_001450670.1| NAD-dependent DNA ligase LigA [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|190359295|sp|A8AY10|DNLJ_STRGC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157074808|gb|ABV09491.1| DNA ligase, NAD-dependent [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 652

 Score =  349 bits (896), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 226/688 (32%), Positives = 362/688 (52%), Gaps = 71/688 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R   ++   +P+      P  P +++GG++     K  H  P
Sbjct: 19  YYTKDAPSVSDSEYDQLYRELVSLEEQYPNEIL---PESPTHRVGGKVLDGFEKYQHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++  +L  F  R+     +K+     +  E KIDG  I++ YE G  V  A R
Sbjct: 76  LYSLQDAFSRAELVAFDERV-----RKEFPDASYLCELKIDGLSISLAYENGILVAGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K  F A+N      G   +A
Sbjct: 131 GDGSIGENITENLKRVKDIP--LTLPEPLTITVRGECYMPKASFDAVNQLRQENGEAEFA 188

Query: 215 NPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           NPRNAA+G LR+L+ + + +     F       TSE     Q ++L+K+  LGF VN   
Sbjct: 189 NPRNAAAGTLRQLDTSVVAKRNLATFLYQEASPTSE---ATQEDVLEKLSQLGFSVNEKR 245

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
             A+T   +  +  ++   R  LPY+IDG+V KV+  + Q++LG   ++P+W I++KF  
Sbjct: 246 VLASTIDQVWDFIEKVGQERDKLPYEIDGIVIKVNHLAAQEELGFTVKAPKWAIAYKFPA 305

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI+            
Sbjct: 306 EEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIR-----------E 354

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           +DIR  D V+V +AG++IP V+ ++  +R  D +    PS CP CQS ++   +      
Sbjct: 355 KDIRKDDTVIVYKAGDIIPAVLRVVEGKRVSD-EHLDVPSKCPSCQSDLLHFEDE----- 408

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
             A RC   L C AQ +E L HF SRDA NI GLG   ++  F  +     +R  A I+ 
Sbjct: 409 -VALRCINPL-CPAQIMEGLAHFASRDAMNISGLGPAVVEKLFAKD----LVRDVAGIYR 462

Query: 513 LQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
           L          IE++L    F + S   LY++I   ++ S E+ +F LGIRHVG++ +R 
Sbjct: 463 LN---------IEDLLQLENFKEKSANKLYNAIQASKSNSAEKLLFGLGIRHVGSKASRI 513

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           L + +    + AQ           +   ++ +  +G +IA+++  ++         + LL
Sbjct: 514 LLEKFHDIPSLAQA----------EQEEIVSIDSLGMVIAKSLHSYFAQE----GTQILL 559

Query: 630 KEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           KE+  +      +G  +    + +  K +V TG L+ + R +A+E + +LGA V+  +S+
Sbjct: 560 KELEEAGVNLAYLG-EKAAADAVLSGKTVVLTGKLETLTRTQAKEKLLRLGANVAGSVSK 618

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           KTD++I G + GSKL KAQ+LG++I +E
Sbjct: 619 KTDLVIAGADAGSKLAKAQELGIEIQDE 646


>gi|282851211|ref|ZP_06260576.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1]
 gi|282557179|gb|EFB62776.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1]
          Length = 668

 Score =  349 bits (896), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 223/722 (30%), Positives = 378/722 (52%), Gaps = 70/722 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  QA +++  L +++    + YY    P++ D+ YD   +    +   FPDL  S   
Sbjct: 4   LTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTS--- 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       + + + +E
Sbjct: 61  DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLV----GHPVAYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G + +ANPRNAA+G LR+L+   IT  R L+ F++      + 
Sbjct: 175 YMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPKN 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  L F  N   ++  +   +  + +E  + R+ L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAIDEMNRLDFHTNQTGQRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +++
Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTVVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DY++            + +R+GD V + +AG++IP++  +++N+R  D++P+ 
Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPYQ 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487
            P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG  
Sbjct: 402 IPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGPR 454

Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             KQ +D  F        +   AD++ L   Q      +  +  F D S+TNL  SI   
Sbjct: 455 IVKQLIDKNF--------VNDVADLYHLTNEQ------LSQLDHFKDKSITNLLTSIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  S E  +F LGI HVGA+ AR + + Y + +  +Q               L  +  +G
Sbjct: 501 KQNSAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658
           + IA+++  ++  P    + + LL+E+  S      +G  E+       + K +V TG L
Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               R +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +
Sbjct: 607 SDFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666

Query: 719 QQ 720
           ++
Sbjct: 667 EK 668


>gi|325962711|ref|YP_004240617.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468798|gb|ADX72483.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3]
          Length = 767

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 225/750 (30%), Positives = 378/750 (50%), Gaps = 65/750 (8%)

Query: 4   RQLIPIEALSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           R   P+E  S+  E  R+E  +L   +  +   YYQ   P++ D+E+D L RR + I   
Sbjct: 14  RTTEPVEPESVPSESVREEYENLVDLVRKYRFAYYQEDAPLVSDAEFDELFRRLEEIEAL 73

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
            P+L  ++ P     ++GGE++ +   V H     SLE ++++E+L  ++T+      K 
Sbjct: 74  HPELVSNDSPT---QEVGGEVSAAFAAVEHLQRMYSLEDVFSLEELEAWLTKASASIGKL 130

Query: 122 DDNS--IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-S 178
            + +    +  E KIDG  + + Y  GK V AA RGDG +GED++  +  I  IPR L  
Sbjct: 131 GNGTPAAAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIQEIPRELRG 190

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237
              P  +EVRGEV+I   +F   N+ +I  G+ P ANPRNAA+G LR+ +P +   R L 
Sbjct: 191 EGFPAEMEVRGEVFIPSKEFAEFNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPLK 250

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            FVHG+G    + A  Q E    ++  G PV+       +   ++ +       R  L +
Sbjct: 251 MFVHGIGARDGLPAGSQSESYALLKQWGLPVSPYSEVLGSLDEVLEFIKRYGDKRHKLLH 310

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KVD+F+ Q+ LG   R PRW +++K+  ++  T+LLDI + +GRTG +TP   
Sbjct: 311 EIDGIVIKVDDFATQRALGYTTRVPRWAVAYKYPPEEVHTKLLDIQVNVGRTGRVTPFGL 370

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +EPV + G+ +  ATLHN+D +K            + +++GD V++++AG+VIP++V  +
Sbjct: 371 MEPVKVAGSTVEMATLHNQDVVK-----------AKGVKIGDIVILRKAGDVIPEIVGPV 419

Query: 418 V---NERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLK 473
           +   +++ P  + F  P+ CP C +     L P K G +    RC    +C +Q  ER+ 
Sbjct: 420 LALRDQQDPPVRDFVMPTECPSCGT----PLAPAKEGDVDI--RCPNAKSCPSQLRERVF 473

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDP---------AFSIRIPADIFTLQ-RRQQTS--- 520
           H   R AF+IE LG +      +  +P         A     P D+  ++ RR++ S   
Sbjct: 474 HLAGRGAFDIEALGWEAAIALTQPAEPEVPPLTSEAALFDLTPEDLAGVRIRREKRSKGV 533

Query: 521 -TTKIENILGF-----------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            T + E +  F              +   L+  ++K +   L R + +L IRHVG   +R
Sbjct: 534 PTGEYELVPYFYSKGTAKSPSRPTATTEKLFKELDKAKTQPLWRVLVALSIRHVGPRASR 593

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           +LA  + S     Q     +AH +           VG  IA A+ E++    +   V+  
Sbjct: 594 ALATAFGSMDAIRQASEEELAHVDG----------VGPTIAAALKEWFAEDWHREIVDRW 643

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
                      ++++   +E   +V TG+L    R +A+E +   G   +  +S+ T  +
Sbjct: 644 AAAGVRMKDERDESMPRTLEGLTVVVTGSLPNFSRDEAKEAILVRGGKAAGSVSKNTSYL 703

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + G++ G+KL+KA+QLG+ +++E+ F  LL
Sbjct: 704 VAGESAGTKLDKAEQLGIPVLDEDGFRQLL 733


>gi|15616692|ref|NP_239904.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11132251|sp|P57172|DNLJ_BUCAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|25294009|pir||F84937 DNA ligase (NAD) (EC 6.5.1.2) [imported] - Buchnera sp.  (strain
           APS)
 gi|10038755|dbj|BAB12790.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 675

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 239/729 (32%), Positives = 388/729 (53%), Gaps = 74/729 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE+ RK L  L+ E  YH       ++ II D+EYD L R+   +     +L  S+ P  
Sbjct: 8   IEKLRKIL--LKYEYFYH-----TLNQSIISDAEYDYLFRQLYELELKNKELIPSDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              K+G  +     K+ H  P LSLE  +++     F  RI +     ++  + F  E K
Sbjct: 60  --QKVGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSIH--NNEPLSFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  I+I YE+G FV AA RGDG  GE++++  R I +IP ++  ++IP+ +E+RGEV+
Sbjct: 116 LDGVAISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K++F+ LN +      K ++NPRNAA+G LR ++P +IT  R L F  HG     + F
Sbjct: 176 MLKSNFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDP-NITAERKLIFSCHG----CDFF 230

Query: 251 AKGQYEMLQK----MRCL--GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            K   E+       M+CL  G PVN  +   ++   I+ +Y ++   R+ L +DIDG+V 
Sbjct: 231 VKTNKELTTHYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVI 290

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+   LQK++G   +SPRW I+ KF+ K+  T L D+  Q+GRTG++TPVA   PV I 
Sbjct: 291 KVNSLELQKKIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYIS 350

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +I+ A+LHN++ I+ L           ++   D + + R+G+VIP+++++I   R  +
Sbjct: 351 GVMISKASLHNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDN 399

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+   FPSFCP+C + ++ ++  K        RC  GL C AQ+ + L HF S+ +  + 
Sbjct: 400 AKKIIFPSFCPVCNTELLENIEEK------LIRCHSGLTCDAQKKQALYHFFSKKSLYVV 453

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + ++   +       ++ P D F L   +     +++N+   G      + +SI K
Sbjct: 454 GLGPKIINELVEKG----LVKNPIDFFYL---KDIDLIQLKNV---GKRKSIKIINSIKK 503

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L+ FI++LGI  VG  +A  +A Y++                N + L L  +  V
Sbjct: 504 CKKTTLKCFIYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGV 553

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSE---IENKKLVFTGTLQK 660
           G II+  I  ++    N   V  L+K+    +   E   ++SE     NKK+V TG  + 
Sbjct: 554 GKIISNNIFNYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKS 613

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R + +  +  LGA +S  +SRKTD +I G+N GSK  +A+ L VKI+N+E+       
Sbjct: 614 FSRIELKTILLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEEL------ 667

Query: 721 YNTTLRIHD 729
            N+ +RI +
Sbjct: 668 -NSLIRIKE 675


>gi|72383117|ref|YP_292472.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A]
 gi|123746237|sp|Q46IA9|DNLJ_PROMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|72002967|gb|AAZ58769.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A]
          Length = 690

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 239/724 (33%), Positives = 377/724 (52%), Gaps = 70/724 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL +L  + +Y    YY    P I DS YD L R    I +  P L   + P+    ++
Sbjct: 13  KELRALLNKANY---SYYVLDSPEIDDSVYDQLYRELIEIENIHPSLITDDSPS---QRL 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIF---FTLEPK 133
           GG  +     V H+IP LSL+  +N+ ++  +  RI +    ++ N   ++      E K
Sbjct: 67  GGVPSKGFKNVEHNIPLLSLDNAFNLNEVEAWYGRISKLISSENKNIKKVYDPELICELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           IDG  I++RYE G    A  RGDG +GED++  IR I TIP R+L  N P  +E+RGE +
Sbjct: 127 IDGNAISLRYENGILTRATTRGDGKTGEDITTNIRTISTIPLRLLLENPPLWVEIRGEAF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL------GK 245
           +  N F  LN E     +  +ANPRN+ +G LR+L+P  + +R L+FF + L        
Sbjct: 187 MPNNIFNKLNIERKNNDQPLFANPRNSCAGTLRQLDPKIVASRKLDFFAYSLYFPENWEP 246

Query: 246 TSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           T   F K   Q E L+ ++ +GF VN       T +    YY   +  +  L Y  DG+V
Sbjct: 247 TDNNFKKPISQSESLEFLKNIGFKVNTTYETTKTLNEANKYYKYWEVKKDFLAYATDGIV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+D+F +Q  LG   ++PRW I+ K+  ++ +T+L  I  Q+GR+G +TPVA  E + +
Sbjct: 307 VKIDKFEIQNLLGATNKAPRWAIAVKYPAEEKATKLRKIIFQVGRSGAVTPVAEFESIEL 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  ATLHN   +  L           D+   D ++V++AGE+IP+V+ +I   R  
Sbjct: 367 AGTSVNRATLHNAKRLASL-----------DLHYEDTIIVRKAGEIIPEVIRVIKEFRKV 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+    P  CP C S+++ + N    K +  +RC   L         L+H+VS+ + NI
Sbjct: 416 DAKLVQLPQNCPECNSKLILESNEAITKCI-NYRCAAKLKG------LLRHWVSKGSMNI 468

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYD 540
           +GLG++ ++    +E    SI   AD++ L+         I+++L    FG+ S  NL  
Sbjct: 469 DGLGEKIINQLV-NEGYVKSI---ADLYKLE---------IDSLLELERFGEKSANNLLI 515

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            IN+ +N +  + ++ LGI H+G   A+SL+  + S +       N IA  + + +S I 
Sbjct: 516 EINESKNKNWHKQLYGLGIPHIGEANAKSLSNNFNSIEEL-----NAIAKESPEKISNIY 570

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVF 654
               G+ +  AIV+++ +  N   ++ L      LKE   S   +  N S+  + K  V 
Sbjct: 571 G--FGNEMKDAIVKWFDDSNNQTLIKELKAIGFSLKESLDS--NYNSNQSNVFDGKSFVL 626

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL  + R +A+E +   G  VS+ +S+KTD ++ G+  GSKL KAQ+LGVKI+NE + 
Sbjct: 627 TGTLDSLTRDEAKELIESAGGKVSSSISKKTDFLVSGEKAGSKLNKAQELGVKIINENEL 686

Query: 715 LFLL 718
             LL
Sbjct: 687 KLLL 690


>gi|257054924|ref|YP_003132756.1| NAD-dependent DNA ligase LigA [Saccharomonospora viridis DSM 43017]
 gi|256584796|gb|ACU95929.1| DNA ligase, NAD-dependent [Saccharomonospora viridis DSM 43017]
          Length = 731

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 232/724 (32%), Positives = 377/724 (52%), Gaps = 52/724 (7%)

Query: 8   PIEALS--IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           P+E +     + R+  S+L +EI  H   YY    P I D+E+D L R  + +    P L
Sbjct: 35  PVEGIQDVPAEVRERHSALVEEIRGHQFRYYVLDAPTISDAEFDQLMRDLERLEAEHPAL 94

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                P+ P   +GG  +       H    LSL+ ++++++L+ +I R+    +++   S
Sbjct: 95  V---SPDSPTQTVGGTFSTEFRAHDHLERMLSLDNVFDLDELQAWIDRV----EREVGGS 147

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----I 181
             +  E K+DG  + + YE G+ V    RGDG +GEDV+  +R +  +P  L+      +
Sbjct: 148 TRYLCELKVDGLAVNLVYENGRLVRGLTRGDGRTGEDVTLNVRTVQDVPERLTATDRFPV 207

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFV 240
           P+++EVRGEVY    +F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L    
Sbjct: 208 PDVVEVRGEVYFRVEEFADLNAALVKAGKAPFANPRNAAAGSLRQKDPKVTRSRPLRLVC 267

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           HGLGK        Q E  + +   G PV+   +  ++   ++ Y       R    Y+ID
Sbjct: 268 HGLGKRVGFEPTRQSESYEALAAWGLPVSPYSKVIDSTEELIEYIRYWNEHRYDAAYEID 327

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVD+ SLQ++LG  +R+PRW +++K+  ++A+T LLDI + +GRTG +TP A +EP
Sbjct: 328 GVVVKVDDVSLQRRLGTTSRAPRWAVAYKYPPEEANTTLLDIRVNVGRTGRVTPYAVMEP 387

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ ++ ATLHN + +K         R G  + +GDRV++++AG+VIP+V+  IV+ 
Sbjct: 388 VKVAGSTVSMATLHNAEEVK---------RKG--VLIGDRVVIRKAGDVIPEVLGPIVDL 436

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    + F  P+ CP C +++  +   K G +    RC    +C AQ  ERL H   R A
Sbjct: 437 RTGTEREFVMPTHCPECGTQLAYE---KEGDVDI--RCPNARSCPAQLRERLFHLAGRGA 491

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ----RRQQTSTTKIENILGFGDVSVT 536
           F+IE LG +      +S      I    D+F L     +R     TK   +   G     
Sbjct: 492 FDIEVLGYEAAGALLRS----GVIADEGDVFDLTEEDLKRVDLFVTKSGQLSANG----R 543

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            L D++   ++  L + +  L IRHVG   A++LA+ + S       I+ I A + +   
Sbjct: 544 RLLDNLAAAKDRPLWKVLVGLSIRHVGPTAAQALAREFGS-------IDAIDAASEE--- 593

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            L  V  VG  IA+A+ E++    +   VE   +         + +V   +E   +V TG
Sbjct: 594 RLAEVDGVGPTIAKAVREWFAVDWHREVVEKWRRAGVRMEAERDTSVPRNLEGLSIVVTG 653

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL++  R +A+E +   G   +  +S+KT  ++VGD PGSK +KA QL + +++E+ F  
Sbjct: 654 TLREFSRDEAKEAIMARGGKAAGSVSKKTAFVVVGDAPGSKYDKAVQLKIPVLDEDGFRV 713

Query: 717 LLQQ 720
           LL Q
Sbjct: 714 LLDQ 717


>gi|294673321|ref|YP_003573937.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23]
 gi|294473291|gb|ADE82680.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23]
          Length = 674

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 229/725 (31%), Positives = 369/725 (50%), Gaps = 78/725 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ RKEL         H+  YY  ++P I D E+D +      +    P++A   DPN 
Sbjct: 7   IEQLRKELHE-------HNYKYYVLNQPTIGDQEFDFMMHELQDLEAKHPEMA---DPNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G ++N    +V H  P LSL   +N +D+  +   + +    +D        E K
Sbjct: 57  PTQRVGSDLNEEFRQVEHKYPMLSLANTYNEQDVADWYESVKKGLAGED---FEVCCEMK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----------NIPE 183
            DG  I++ Y  GK   A  RGDG  G+DV+  ++ I +IP VL+             P 
Sbjct: 114 YDGLSISLTYVDGKLTQAVTRGDGVHGDDVTTNVKTIRSIPLVLTPPAAGDLFAAPAYPR 173

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242
             E+RGE+ +  + F  LN E        +ANPRNAASG L+    + + +R L+ +++ 
Sbjct: 174 EFEIRGEILMPWSVFERLNKEREEAEEPLFANPRNAASGTLKSQKSSLVASRQLDAYLYY 233

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           L    E+ A+G YE L+  R  GF ++ G+++  T   I  + N   + R  LP   DG+
Sbjct: 234 L-LGEELPAEGHYENLEVARSWGFKISEGMKKVKTLQQIYDFINYWDTERKKLPVATDGI 292

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+    Q+ LG  A+SPRW I++KF  ++  TRL ++  Q+GRTG +TPVA ++PV 
Sbjct: 293 VLKVNSIRQQRALGFTAKSPRWAIAYKFKAERVCTRLNEVTYQVGRTGAITPVANMDPVQ 352

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  ATL+NED+IK             D+ +GD V V++ GE+IPK+V + +++R 
Sbjct: 353 LAGTTVKRATLNNEDFIKSF-----------DLHIGDYVYVEKGGEIIPKIVGVDIDQRP 401

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             AQP  F   CP C + +VR      G+  AA  C     C  Q   R++HF++R A N
Sbjct: 402 IIAQPVEFIKRCPECGTPLVR----YEGE--AAWYCPNDSGCPPQIKGRIEHFIARKAMN 455

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ---QTSTTKIENILGFGDVSVTNLY 539
           I+ LG + +D +++       I   AD++ +  +Q     S TK          S   + 
Sbjct: 456 IDSLGPETVDDYYRHG----LIHNIADLYDIDVQQINGDGSRTK----------SAQRIV 501

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           + I   + +  ER +F+LGIR VG   A+ LA+++           NI A  N     L 
Sbjct: 502 NGIAASKEVPFERVVFALGIRFVGETSAKLLARHF----------KNIDALMNAGIEELQ 551

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKKLVF 654
            +  +G+++A++I+ ++    N+  +E      L  E+S +      N+S ++  + +V 
Sbjct: 552 EIEGIGEVMAKSIITYFHTEENLKIIERLRNYGLQMELSEA---QTANISDKLAGQSIVI 608

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ 713
           +G      R + +  + Q G      +S KT  I+ G+N G SKL+KA++LG+KIM+EE+
Sbjct: 609 SGVFAHHSRDEYKAIIEQNGGKNVGSISSKTSFILAGENMGPSKLQKAEKLGIKIMSEEE 668

Query: 714 FLFLL 718
           FL ++
Sbjct: 669 FLEMI 673


>gi|322373465|ref|ZP_08048001.1| DNA ligase, NAD-dependent [Streptococcus sp. C150]
 gi|321278507|gb|EFX55576.1| DNA ligase, NAD-dependent [Streptococcus sp. C150]
          Length = 652

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 225/706 (31%), Positives = 374/706 (52%), Gaps = 63/706 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L  +++ +   YY    P + D+EYD L R   A+    P+L +++ P    +++
Sbjct: 3   KRMKELVAKLNQYAKEYYTEDNPSVSDAEYDKLYRELVALEAEHPELVQADSPT---HRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+   +   D     +  E KIDG  
Sbjct: 60  GGLVLDGFEKYQHEYPLYSLQDAFSREELDTFDKRVKDEFPNAD-----YMAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +F
Sbjct: 115 ISLTYVNGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N +    G   +ANPRNAA+G LR+L+   +  R L  F++     +E     Q ++
Sbjct: 173 ERINTQRQENGEAEFANPRNAAAGTLRQLDTKVVAKRRLATFLYQEASPTERLT--QNDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LNEVTELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDYLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    LL +D Q+GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R    +P   P+ CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQ-EPMEVPTQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  F++
Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFQA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     ++  ADI+ L      ++     + GF + S   LY +I   +  S E+ ++ L
Sbjct: 452 E----LVKDVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQTSKENSAEKLLYGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA++++ L + + + ++ A          + D  ++  V  +G++IA++I  ++ 
Sbjct: 502 GIRHVGAKVSKQLLEAFETIKDLA----------SADVEAIAAVDGLGEVIAKSIQRYFV 551

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEYVT 671
                  V+ LLKE+  S G +   +  ++ +      K +V TG L+ ++R +A+  + 
Sbjct: 552 KEE----VKVLLKELE-SYGINMAYLGQKVADNAILSGKTVVLTGKLEHLKRSEAKAKLE 606

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            LGA V+  +S+KTD+++ G + GSKLEKAQ LG+ +++E   L L
Sbjct: 607 ALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIDVVDEAWLLNL 652


>gi|255310946|ref|ZP_05353516.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276]
 gi|255317247|ref|ZP_05358493.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276s]
 gi|296435662|gb|ADH17836.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9768]
 gi|296436585|gb|ADH18755.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11222]
 gi|296437522|gb|ADH19683.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11074]
 gi|297140021|gb|ADH96779.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9301]
          Length = 663

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 235/704 (33%), Positives = 379/704 (53%), Gaps = 53/704 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75
           +R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S  P   L 
Sbjct: 5   SRDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           ++  G+  +    V HS P LS+  ++++++L +F +R     +K    S  ++LE KID
Sbjct: 65  DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S 
Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   +E   +  
Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITEQKKRSH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ     GF V    +Q  +   +V    E++ +R  LP  IDG+V KVD  + Q +
Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRVALPMAIDGVVIKVDNIAHQDR 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+
Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS C
Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   
Sbjct: 404 PVCHEPVVKE--------KVSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+       I   +DIF L      +   ++ + GF D S+ NL  SI   + ++L+R +
Sbjct: 455 FE----VGLISSCSDIFAL------TEEDLKQVPGFKDRSIQNLLASIAGAKKVTLDRLL 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +L I  VG+  A +LA ++ +       ++ +I  + D+   L+ +  +G  +A +IV 
Sbjct: 505 TALSIPFVGSSGAIALADHFGT-------LDKVIEASLDE---LMSIEGIGPKVAASIVA 554

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+    N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  LG
Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLG 613

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             VS+ +S+ T  +I G   G KL+KAQ LG+ I NE + L +L
Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRIL 657


>gi|319760626|ref|YP_004124564.1| DNA ligase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039340|gb|ADV33890.1| DNA ligase [Candidatus Blochmannia vafer str. BVAF]
          Length = 598

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 215/611 (35%), Positives = 333/611 (54%), Gaps = 49/611 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY  ++    D EYD   +    +   +P L     P   L KI   +  +  +V H  P
Sbjct: 22  YYLKNESETSDEEYDKTLQELRQLEFEYPCLITENSPTKFLGKI---LENNFRQVYHRAP 78

Query: 95  TLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
            LSL  + N   L  F  RI Y+      + SI +  E KIDG  I++ Y+ GK + AA 
Sbjct: 79  MLSLNSVMNKSQLLLFNDRIEYKLRDNNQNKSIIYCCELKIDGVAISLLYKSGKLLKAAT 138

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKNDFLALNDEMIAVG 209
           RGDG  GEDV+  +R + +IP  L  N    +P ++E+RGE++ISK  FL LN +++  G
Sbjct: 139 RGDGKIGEDVTKNVRVVSSIPECLRKNDGMQLPYLLEIRGEIFISKLCFLKLNQKILKSG 198

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--SEIFAKGQYEMLQKMRCLGF 266
            KP++N RNAASG LR+LNP    +R L F+ +G+     ++      ++ LQ    LG 
Sbjct: 199 NKPFSNARNAASGSLRQLNPNITASRSLMFYCYGISYYVGADELPNSHWDRLQLCLKLGI 258

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           P+N+ ++  N    ++ YY+ +  IRS L YDIDG+V KVD    QK+LG   R+P W I
Sbjct: 259 PINDHIQLVNGVDKVLKYYDHITYIRSNLKYDIDGIVVKVDNCVFQKKLGYGTRAPHWAI 318

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++KF  +   T+L DI  ++GRTG++TP+  ++P+ I   +I   ++HN + I+      
Sbjct: 319 AYKFPAESKLTQLNDIIFKVGRTGLITPIVYIKPIVINNVVIKKVSMHNVNEIRRF---- 374

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                  ++  GD VLV+R+G+VIPK+V +I+++R  D +  + P FCP+C + ++   N
Sbjct: 375 -------NLMFGDTVLVQRSGDVIPKIVKVILSKRTNDMKVITLPQFCPVCGTLLITS-N 426

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
            ++  L    RC   L C AQ+   LKHFVSR A NI G+G++ ++     ++  FS   
Sbjct: 427 CRSSVL----RCPAKLICLAQRKSMLKHFVSRKAMNIHGMGEKVINQLV-DKNLVFS--- 478

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           P D F L R        + N+ G+G  SV  L  SI+  ++ +L  FI++LGI +VG  +
Sbjct: 479 PVDFFYLNRENL-----LFNLDGYGVKSVEKLLRSIDLAKHTTLANFIYALGIPNVGESV 533

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A SLA  Y       + I  +I+    D+ SL  +  VGD IA  I  F+++P N+  ++
Sbjct: 534 ANSLAVKY-------KTIEKLISA---DFQSLSTLQYVGDSIAFTIYSFFKDPINLKNIK 583

Query: 627 ALLKEVSPSIG 637
            L   ++P IG
Sbjct: 584 DL---INPDIG 591


>gi|219682005|ref|YP_002468389.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|254781272|sp|B8D6X9|DNLJ_BUCAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219621738|gb|ACL29894.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|311085811|gb|ADP65893.1| DNA ligase (NAD+) [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086384|gb|ADP66465.1| DNA ligase (NAD+) [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 676

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 239/729 (32%), Positives = 388/729 (53%), Gaps = 74/729 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE+ RK L  L+ E  YH       ++ II D+EYD L R+   +     +L  S+ P  
Sbjct: 8   IEKLRKIL--LKYEYFYH-----TLNQSIISDAEYDYLFRQLYELELKNKELIPSDSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              K+G  +     K+ H  P LSLE  +++     F  RI +     ++  + F  E K
Sbjct: 60  --QKVGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSIH--NNEPLSFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  I+I YE+G FV AA RGDG  GE++++  R I +IP ++  ++IP+ +E+RGEV+
Sbjct: 116 LDGVAISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           + K++F+ LN +      K ++NPRNAA+G LR ++P +IT  R L F  HG     + F
Sbjct: 176 MLKSNFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDP-NITAERKLIFSCHG----CDFF 230

Query: 251 AKGQYEMLQK----MRCL--GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            K   E+       M+CL  G PVN  +   ++   I+ +Y ++   R+ L +DIDG+V 
Sbjct: 231 VKTNKELTTHYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVI 290

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+   LQK++G   +SPRW I+ KF+ K+  T L D+  Q+GRTG++TPVA   PV I 
Sbjct: 291 KVNSLELQKKIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYIS 350

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +I+ A+LHN++ I+ L           ++   D + + R+G+VIP+++++I   R  +
Sbjct: 351 GVMISKASLHNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDN 399

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+   FPSFCP+C + ++ ++  K        RC  GL C AQ+ + L HF S+ +  + 
Sbjct: 400 AKKIIFPSFCPVCNTELLENIEEK------LIRCHSGLTCDAQKKQALYHFFSKKSLYVV 453

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + ++   +       ++ P D F L   +     +++N+   G      + +SI K
Sbjct: 454 GLGPKIINELVEKG----LVKNPIDFFYL---KDIDLIQLKNV---GKRKSIKIINSIKK 503

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L+ FI++LGI  VG  +A  +A Y++                N + L L  +  V
Sbjct: 504 CKKTTLKCFIYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGV 553

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSE---IENKKLVFTGTLQK 660
           G II+  I  ++    N   V  L+K+    +   E   ++SE     NKK+V TG  + 
Sbjct: 554 GKIISNNIFNYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKS 613

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R + +  +  LGA +S  +SRKTD +I G+N GSK  +A+ L VKI+N+E+       
Sbjct: 614 FSRIELKTILLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEEL------ 667

Query: 721 YNTTLRIHD 729
            N+ +RI +
Sbjct: 668 -NSLIRIKE 675


>gi|328885211|emb|CCA58450.1| DNA ligase [Streptomyces venezuelae ATCC 10712]
          Length = 726

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 233/750 (31%), Positives = 373/750 (49%), Gaps = 81/750 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR++ + L ++I  H   YY   +P+I D E+D L R  +A+   +P+L     P+ P 
Sbjct: 11  EAREKHAELAEQIEEHRFRYYVKDQPVISDGEFDKLLRALEALEEEYPEL---RTPDSPT 67

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G+       V H    LSL+  ++ E+L  +  R+ R     D     +  E K+D
Sbjct: 68  QKVAGQYETDFTSVEHRERMLSLDNAFDDEELTTWADRVARDVGTPD---FHYLCELKVD 124

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G+   AA RGDG +GED++  +R I  IP R+    +P+++E+RGEVY  
Sbjct: 125 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIADIPERLRGDRVPDLVEIRGEVYFP 184

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF--- 250
              F  LN  ++  G KP+ANPRNAA+G LR+ +P    +R L+  VHG+G   E F   
Sbjct: 185 MEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIG-AREGFDIS 243

Query: 251 -AKGQYEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                YE+L +    G P    N  V         ++Y+ E    R ++ ++IDG+V K+
Sbjct: 244 RLSDTYELLHEW---GLPTAKHNKVVGSLGEVREFIAYFGEN---RHSVEHEIDGVVVKL 297

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           DE  LQ +LG  AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+
Sbjct: 298 DEIPLQGRLGSTARAPRWAIAWKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVAGS 357

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN++ +K            + + +GD V++++AG+VIP+++  + + R    +
Sbjct: 358 EVEFATLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSER 406

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P+ CP C + +      K G +    RC     C AQ  ERL     R   +IE  
Sbjct: 407 EFVMPAECPECGTPL---KAMKEGDI--DLRCPNARTCPAQLRERLFFLAGRQCLDIENF 461

Query: 487 GKQQLDFFFKSEDPA----------FSIRI----PADIFTL-------QRRQQTSTTKIE 525
           G        +  +PA          F + I    P   + L       +R  +T   KI 
Sbjct: 462 GAVAAAALTRPLEPAEPPLVDEGDLFDLTIEQLLPIKAYVLDPDSGLPRRDPKTGEEKIV 521

Query: 526 NIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            +     G    +   + ++I   +   L RFI  L IRHVG   A +LA+ + S +   
Sbjct: 522 TVFANQKGEPKKNALAMLENIAAAKTRPLARFINGLSIRHVGPVAAEALAREFRSLERIE 581

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           Q               L  V  VG IIA A+ +++    +    E + K  +  +   ++
Sbjct: 582 QASEE----------ELAAVDGVGGIIAAAVKQWFSEEWH---REIVRKWRAAGVSLEDE 628

Query: 642 NVSSEI-----ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
               ++     E   +V TGTL+   R  A+E +  LGA V+  +S+KT  ++VG+NPGS
Sbjct: 629 GAGEDVGPRPLEGLTVVVTGTLENFTRDGAKESLQSLGAKVTGSVSKKTSFVVVGENPGS 688

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           K +KA QL V +++E+ F  LL+Q     R
Sbjct: 689 KYDKAMQLKVPVLDEDGFKVLLEQGPEAAR 718


>gi|325684644|gb|EGD26799.1| NAD-dependent DNA ligase LigA [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 671

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 222/718 (30%), Positives = 380/718 (52%), Gaps = 55/718 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+P+L  ++ 
Sbjct: 2   AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELKSADS 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
                 ++GGE+N  L KV H +P LS+  +++ E+L +F  R+    QK   + + + +
Sbjct: 62  IT---QRVGGEVNSDLPKVEHQVPMLSMGDVFSKEELAEFDQRV----QKAIGHPVAYNV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YE+G+   A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE
Sbjct: 115 ELKIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSE 248
            Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++  +   + 
Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAG 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           I    Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+
Sbjct: 233 I--DSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDD 290

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ  LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G  +
Sbjct: 291 LALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGTTV 350

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+
Sbjct: 351 ARASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPY 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V  LN +      A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 400 EVPTKCPSCGEDLVH-LNEEV-----ALRCINP-SCPAQVEEGITHFASRQAMNIAGLGP 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I++ R  
Sbjct: 453 KIVKQLI-AKDLVHNV---ADLYYL------TADDLSQLDHFKEKSINNLLAAIDQSRKN 502

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI +VG + A          Q  AQ+  N+    +     L  +  +G  I
Sbjct: 503 SVELVLFGLGIDNVGGKAA----------QLIAQKFKNMSKIASASVQELTAIDTIGMTI 552

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++Q       + A L+E   +   +G   +   +  + K +V TG L    R +
Sbjct: 553 AESLTAYFQQ-EEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAE 611

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             + +  LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T
Sbjct: 612 FTKKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669


>gi|149195296|ref|ZP_01872384.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2]
 gi|149134560|gb|EDM23048.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2]
          Length = 682

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 234/734 (31%), Positives = 389/734 (52%), Gaps = 87/734 (11%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+ +K + +L++   Y    YY    P++ D EYD L +  +      PD     D   P
Sbjct: 6   EEYKKAVETLKKWAYY----YYVLDNPLVTDEEYDKLYKEVEEYEKNHPDEV---DKTSP 58

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDL---RKFITRIYRFWQKKDDNSIFFTLE 131
             +IG ++ L  FK    I      K+W++ED+    +FI  + R  +   +++  F +E
Sbjct: 59  TQRIG-DVVLDEFKKAKHIT-----KMWSMEDVFDKNEFIDWVNRVKRAIGNDNFSFYIE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  + + Y+ G+ + A  RGDG  GEDV+   + I TIP  L++    +IE+RGEV
Sbjct: 113 PKFDGASLNLVYKNGELIRAETRGDGEIGEDVTLNAKTIKTIP--LTIKYKGLIEIRGEV 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I K DF  LN+E I  G   +ANPRNAA+G LR+L+P     R L F+  G+G   E+ 
Sbjct: 171 VIKKQDFDKLNEERIKKGEPTFANPRNAAAGSLRQLDPKITANRPLLFYPWGVGYPIEVL 230

Query: 251 -----AKGQYE-----MLQKMRC----------LGF--PVNNGVRQANTFHGIVSYYNEM 288
                +K +YE      ++K +           LGF  P   G  +A+    ++  YNE 
Sbjct: 231 ISDEVSKEEYERDKKEFIEKFKTYKNIMDFVYSLGFKEPPKRGECKASDIECVLKKYNEF 290

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
             IR  +P  +DG+V KV+E +L + LG  A+ PRWM+++KF   +  T + D+ +Q+GR
Sbjct: 291 VEIRDEIPVMLDGMVVKVNELNLLENLGYTAKYPRWMVAYKFPAIEKETIIEDVIVQVGR 350

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG+LTPVA L+P+ IGG ++  ATLHN D I+ +           DIR+GDRV+V R+G+
Sbjct: 351 TGVLTPVAILKPIEIGGVIVERATLHNFDEIERM-----------DIRIGDRVIVIRSGD 399

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIPK+  ++ ++R  + +    P+ CP+C S V+ +     G ++   +C   L+C A+ 
Sbjct: 400 VIPKITKVLYHKRTGNEKKIPRPTHCPVCGSEVLDE-----GAII---KCQ-NLSCPARV 450

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           +  + +  S++  +IEGLG+      ++       ++   D+F L+         +E + 
Sbjct: 451 VNTIIYAASKNCLDIEGLGESVAKLLYEKG----LVKDIRDLFKLK------VEDLEKLP 500

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
            F      NL ++I+K + I   RF+ +LGI H+G   ++ +       + F  E     
Sbjct: 501 LFARKKAENLVNAISKVKGIECWRFVNALGIEHIGEVASKKIC------EKFGVE---FY 551

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
            H+ +++  L      G  + ++I E+ +  ++   +E L+K + P+  + E  V+S   
Sbjct: 552 KHSPEEFYEL---EGFGPEMVKSIAEYVKVNKD--KIEELIKLIEPTNPKKEV-VNSPFT 605

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TG++ K  R + +E +  LGA V+  +S+KTD +IVG++PGSK EKA++LG+ I
Sbjct: 606 GKTVVLTGSMSK-SRSEIKEMLENLGAHVTNSVSKKTDYVIVGEDPGSKFEKAKKLGITI 664

Query: 709 MNEEQFLFLLQQYN 722
           + EE    ++   N
Sbjct: 665 LKEEDMWNMIGDGN 678


>gi|34558095|ref|NP_907910.1| NAD-dependent DNA ligase LigA [Wolinella succinogenes DSM 1740]
 gi|81653397|sp|Q7M8A0|DNLJ_WOLSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|34483813|emb|CAE10810.1| DNA LIGASE POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+] [Wolinella
           succinogenes]
          Length = 650

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 240/688 (34%), Positives = 363/688 (52%), Gaps = 59/688 (8%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P+  D EYD L     A     P+      P  P  +IGG       K +H  
Sbjct: 19  AYYVLDAPLATDEEYDQLYHEALAFERQNPERIH---PASPTQRIGGAPLEGFQKASHLE 75

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
              SLE +++  +L+ +  R+Y+ +         F  +PK DG  + + YE+G+ V AA 
Sbjct: 76  RMWSLEDVFDFGELKSWAERLYKQFPHAT-----FVCDPKFDGASLNLLYEEGRLVRAAT 130

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GEDV+   R IP+IP  LS+ + E IE+RGEV I K DF  L +E +     P+
Sbjct: 131 RGDGLIGEDVTQNARTIPSIP--LSIPLLERIEIRGEVVIPKEDFEKLQEERLRENESPF 188

Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY-EMLQKMRCLGFPVNNG 271
           ANPRNAA+G LR+L+P     R L F   G+G  +  F  G + E+++ +   GF  +  
Sbjct: 189 ANPRNAAAGSLRQLDPAITAKRKLRFIPWGVG--AHPFKTGSFFEIMKSLESYGFIRSPE 246

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
             + +  H I   Y  + S RST P  +DG+V +VDE + Q++LG   ++PR+  ++KF 
Sbjct: 247 RTRCHNIHEIERVYALLVSERSTHPVMLDGMVVRVDEIAYQRELGYTIKAPRFACAYKFP 306

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             +   RLL I +Q+GR+G++TPVA LEPV I GA+I+ ATLHN D IK L         
Sbjct: 307 AIEKKARLLSITLQVGRSGVVTPVANLEPVEIEGAMISRATLHNFDEIKRL--------- 357

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+R GD V + R+G+VIPK++    + R  + +P S P+ CP C S ++ +       
Sbjct: 358 --DVREGDWVSLIRSGDVIPKIIQPFAHLRSGEEKPLSRPTHCPECGSELLVE------- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
                +C   L+C A+    L HF S+ A NI+GLG++ ++  F+    A  I+   D+F
Sbjct: 409 -EVLIKCQ-NLSCPARIKNSLIHFASKKALNIDGLGEKIIEQLFE----AGLIKEFEDLF 462

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           +L +    S      + GF +    NL D+I   R   L RFI +LGI H+G   A+ L+
Sbjct: 463 SLTKESLLS------LEGFKEKKAQNLLDAIQGVRGCDLWRFINALGIEHIGEGAAKKLS 516

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             +      A  + N   H      ++I +   G+ +AQ+++EF +   N   +E LL  
Sbjct: 517 HAF----GLAFHLQN---HE-----AIIGLEGFGEEMAQSLLEFCRV--NHERIEHLLGL 562

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           + P          S I  K  V TGTL   + H   E +T LGA V + +S+K+D ++ G
Sbjct: 563 IEPLAPIQLTPQDSPIAGKSFVITGTLSAPREHFV-ELLTSLGAKVVSSVSKKSDFLLYG 621

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ GSKLEKA++LGV+ +NEE+   +L+
Sbjct: 622 ESAGSKLEKARELGVRCVNEEELGEILE 649


>gi|254442845|ref|ZP_05056321.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
 gi|198257153|gb|EDY81461.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
          Length = 718

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 236/713 (33%), Positives = 367/713 (51%), Gaps = 54/713 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+ R  L  L  EI+ HDD YY+ + P I D++YDALKR    +   +PDL   +D    
Sbjct: 49  ERGRGRLVELRAEIARHDDLYYRKAAPEISDADYDALKRELHRLEELYPDL---QDGLLI 105

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +++IG + +    +  H  P LSLEK +  E L  F  R+      ++ + +   +EPK+
Sbjct: 106 VDEIGDDRSGVRGEFRHFAPMLSLEKAYTEEALLSFYDRVLSQLTFEELDCL---VEPKV 162

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  I++ YE+G+FV A  RG+G  GEDVS  +  I  +PR L   + PE +E+RGEVY+
Sbjct: 163 DGMAISVLYERGEFVRAVSRGNGRVGEDVSENVLRIEGLPRRLETESPPERVELRGEVYV 222

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN--FFVHGLGKTSEIF 250
           S   F  LN+  +A G +P+A+PR+ A+G L+  +P  ++ R L+  FF +G  +  E  
Sbjct: 223 SFEGFRRLNEARVAAGEEPFAHPRSLAAGSLKLDDPEVVSERSLSIVFFGYGAFEPVEEA 282

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q       +  G PV   +R+      +++   EM+  R   P+ +DG V K+D   
Sbjct: 283 PETQSGFYGLAQSWGIPVLEELRKTRGTEALLAAVREMEERRVLYPFPMDGAVVKIDRAD 342

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q++LG    +PRW +++KFAEK+  TRLL I IQ+GRTG+LTPVA LE + +GG+ I  
Sbjct: 343 VQRELGLGTSAPRWAMAYKFAEKRVETRLLGIRIQVGRTGLLTPVAELEEIRLGGSSIRR 402

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN   I+ +           D+R+GD V ++RAGEVIP VV + + +R   +  + F
Sbjct: 403 ASLHNGGVIERM-----------DLRIGDVVYLERAGEVIPNVVGVNLAKRKSSSTKYVF 451

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C      D     G++    R +    C AQ   +++HF S  A  IEG+G  +
Sbjct: 452 PDLCPSCGYAAELD----EGRVERYCRSS---TCPAQAQRKIEHFASSRAVGIEGIGPAK 504

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT-NLYDSINKRRNIS 549
           +         A  +   AD++ L+              G G  +V   L   I+  R  S
Sbjct: 505 IADLMD----AGLVETVADLYLLEVPDLVQA-------GVGSEAVARKLVSEISGSRAAS 553

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV--GDI 607
           L R +F LGI  VG   ++ LA  Y     FA+        +  D+    R   V  G +
Sbjct: 554 LWRVLFGLGIPEVGVSRSKKLAAAYGDLAAFAR-------ASALDFSPGGRAAEVGFGPV 606

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHK 665
             +A++ +     N    E + + V   +G   +  +  SE+     VFTG L+ + R +
Sbjct: 607 AREAVLAYLSLDEN---RELIGRLVELGLGARSEVMDTRSEVAGTIFVFTGALEGLSRKE 663

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A   V   GA   + +S   D ++VG  PG+KL+KA++LGV+++  E+F  LL
Sbjct: 664 AMALVEAAGAETRSAVSSACDFLVVGKEPGAKLQKARELGVEVIGLEKFRRLL 716


>gi|168705071|ref|ZP_02737348.1| NAD-dependent DNA ligase [Gemmata obscuriglobus UQM 2246]
          Length = 678

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 222/699 (31%), Positives = 365/699 (52%), Gaps = 47/699 (6%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L +++ +H+  YY  + P+I D E+D L +    I  A P L     P+ P  ++GG+
Sbjct: 14  AELRKQLDHHNYLYYVEAAPVISDREFDTLLKELADIERANPGLVT---PDSPTQRVGGQ 70

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
                 +VTH  P LS++  ++  DLRKF   + +        ++ +  E KIDG  +++
Sbjct: 71  PIPGFKQVTHKTPMLSIDNSYDEGDLRKFDADVRK--AVGPGAAVDYVTELKIDGVSMSL 128

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLA 200
            YE G   +AA RG G  G+DV+  I+ I  IP ++ + N P I EVRGEVY+++ +   
Sbjct: 129 TYENGVLAFAATRGSGTVGDDVTHNIKTIAAIPLKLKTSNPPAIFEVRGEVYMTRGELAR 188

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N E     ++PY N RN  +G L+  +P +  TR L FF +G G    +    Q  ML 
Sbjct: 189 INAEQAKGNQEPYKNARNLTAGTLKLKDPRECATRKLAFFAYGSGDIGGLAITTQAAMLA 248

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           K++  GFPVN   R   +   +++Y  E +  R  L YD DG+V KV++++ ++++G  A
Sbjct: 249 KLKEFGFPVNPHERVCGSIDEVIAYCQEWEPKRKELAYDTDGIVVKVNDWAQRERIGYTA 308

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE-PVNIGGALITNATLHNEDY 378
           + P+W  ++KF  +QA+T+L  +   +G+ G LTPVA  + PV + G  +T+A++HN  +
Sbjct: 309 KVPKWAKAYKFEAEQATTKLGKVVFYLGKFGELTPVATFDPPVQLAGTTVTHASMHNASW 368

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           +             RD+R+GD V+V++ GE+IP+VVD+I  +R    Q  ++P  CP C 
Sbjct: 369 V-----------AERDVRIGDTVVVEKKGEIIPQVVDVIKADRTGAEQVITWPDKCPKCG 417

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             V ++ +  +   + A+  TG   C AQ  +RL+ F  +    I+GLG++       +E
Sbjct: 418 GPVEKEESATSYNFICAN--TG--VCPAQLAKRLEGFAKKTRMEIDGLGREVAVQLVDTE 473

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++  AD++ L + Q  +      + GF D    NL D I   +   L R +  L 
Sbjct: 474 ----LVKSVADLYRLTKAQLLA------LEGFKDKKAQNLLDGIAASKGRGLARLLPGLT 523

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  VG  ++  L + +        +I+ IIA   +D   L RV   G   AQ +  F+ +
Sbjct: 524 IYMVGEAMSDLLVEEF-------PDIDLIIAAAPED---LARVKGFGPKRAQFVRAFFDS 573

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                 + A LK+    +   +K   +    +  K +V TGTL    R   ++ +   GA
Sbjct: 574 ESGRQLI-ADLKQFGIKMTHDKKAAPTGGLPLAGKTVVVTGTLVNYDRIGIEQAIKDAGA 632

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             S  +S+KTD ++VGD PGSK +KA++LGVKI+NE +F
Sbjct: 633 KASGSVSKKTDFVLVGDKPGSKADKAKELGVKIINEAEF 671


>gi|298208451|ref|YP_003716630.1| DNA ligase [Croceibacter atlanticus HTCC2559]
 gi|83848374|gb|EAP86243.1| DNA ligase [Croceibacter atlanticus HTCC2559]
          Length = 664

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 224/711 (31%), Positives = 372/711 (52%), Gaps = 59/711 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++  L +E+  H+  YY   KP I D ++D   ++   +    P+     D N P  +
Sbjct: 4   KDQIQQLREELRQHNYNYYVLDKPEISDYDFDQKLKQLQDLETENPEFY---DANSPTLR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++  +    TH     SL+  ++ EDL  +  RI +      D  + +T E K DG 
Sbjct: 61  VGGQVTKNFDTTTHDYRMYSLDNSYSKEDLEDWEKRIMKMV----DGDVHYTCELKYDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G+ + A  RGDG  G++V+  ++ I +IP  L+ + P+  ++RGE+ +    
Sbjct: 117 SISLTYEDGELIRAVTRGDGFKGDNVTNNVKTIRSIPLKLNGDYPKRFDIRGEIILPLEG 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-GKTSEIFAKGQY 255
           F  +N E +A G + YANPRN ASG L+  + T+++ R L+  ++ + GK   +  K Q+
Sbjct: 177 FTKMNAERVANGEEAYANPRNTASGSLKLQDSTEVSKRPLDCLLYSIIGKN--LNFKTQF 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+K R  GF V      A +   ++++ N   + R  LPY+ DG+V KV+    Q++L
Sbjct: 235 EGLEKAREWGFKVPEVATLAKSTKEVMAFVNYWDTHRHDLPYETDGVVIKVNNLQQQEEL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++PRW +++KF  +Q ST L  I  Q+GRTG +TPVA L PV + G  +  A+LHN
Sbjct: 295 GYTAKAPRWAMAYKFKAEQVSTVLEKITYQVGRTGAITPVANLIPVQLAGTTVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           DIR  D V V++ GE+IPK++ +   +R  +++P  +   CP
Sbjct: 355 ADQIEKL-----------DIREEDTVFVEKGGEIIPKIIGVDFTKRDKNSKPTQYIEHCP 403

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C++ +VR+         A H C     C  Q + R++H++SR A +IEGLG + +    
Sbjct: 404 ECETPLVRNEGE------AQHYCPNEERCPPQVVGRIQHYISRKALDIEGLGGETVALLA 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLER 552
                A  I+  AD++TL         KIE++L        S  NL + I   + I  ER
Sbjct: 458 N----AGLIKNYADLYTL---------KIEDVLPLERMAQKSAENLINGIEASKQIPFER 504

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRHVG  +A++L K + + +N A          N     L+ V  +G  IA+++
Sbjct: 505 VLFGLGIRHVGETVAKTLVKTFKTIENLA----------NAKEEELVEVEEIGGKIAESV 554

Query: 613 VEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           V F+ +      V+  LKE    +       +  ++++E + +V +G   K+ R + ++ 
Sbjct: 555 VVFFSDEYKKETVQR-LKEYGVQLEISAEQLQGQTNKLEGEIIVVSGVFNKLSRTELKKA 613

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           +   G  VS+ +S KT  ++ G+N G SK  KA+ L V I+ E++FL  +Q
Sbjct: 614 IEDNGGKVSSSISSKTTYLVAGENMGPSKRTKAEGLNVPIITEDEFLDKIQ 664


>gi|148243508|ref|YP_001228665.1| NAD-dependent DNA ligase LigA [Synechococcus sp. RCC307]
 gi|166216253|sp|A5GWQ3|DNLJ_SYNR3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147851818|emb|CAK29312.1| NAD-dependent DNA ligase [Synechococcus sp. RCC307]
          Length = 675

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 223/707 (31%), Positives = 363/707 (51%), Gaps = 54/707 (7%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L Q ++     YY    P   D+ YD L R    +    PDL  ++ P     ++GG 
Sbjct: 12  AELRQLLNRAAHAYYVLDAPEFEDAVYDRLYRELLDLEQQHPDLLSADSPT---QRVGGP 68

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
                  V H I  LSL+  +N E+L+ +  R+ R  +   +    +  E KIDG  + +
Sbjct: 69  PAEGFSSVEHRIGMLSLDNAFNAEELQAWDARLGRQLEDNPERQREYVCELKIDGNALAL 128

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLA 200
            Y  G  V AA RGDG  GE+++A +R I  +P  L L   P  +EVRGE +I  + F A
Sbjct: 129 SYADGVLVRAATRGDGSRGEEITANVRTIQAVPLRLQLKQPPAWVEVRGEAFIPDDTFEA 188

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-KTSEIFAKGQYEML 258
           +N E    G   +ANPRNA +G LR+L+P  +  R L+FF + +     E+  K Q++ L
Sbjct: 189 INAERQQRGEALFANPRNACAGTLRQLDPKAVAARRLDFFAYTVHLPADEMGPKSQWDAL 248

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           Q +   GF VN    + +   G+V++Y+  +  R  LPY  DG+V K+D    Q+  G  
Sbjct: 249 QWLETAGFRVNPHRERTSGADGVVAFYDRWEEQRHQLPYATDGVVVKLDALERQQLAGFT 308

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++PRW I+ K+A ++A +RLL +  Q+GRTG++TPVA  E V + G  ++ ATLHN D 
Sbjct: 309 QKAPRWAIALKYAAEEAPSRLLRLVAQVGRTGVVTPVAEFEAVPLAGTSVSRATLHNADR 368

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++ L           D+  GD ++V++AGE+IP+V+ ++   R   A+    PS CP C 
Sbjct: 369 LEEL-----------DLHSGDTIVVRKAGEIIPEVLRVLPELRPEGAEQLELPSHCPECG 417

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S +VR+    +G+  AA RC    +C A     L+H+VSR A +++GLG + ++      
Sbjct: 418 SLLVRE----SGE--AATRCVNS-SCPAILRGALRHWVSRQAMDVDGLGGKLIEQLV--- 467

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
           D    +R  AD++ L      S  ++      G+ S +NL +++   R     R +++LG
Sbjct: 468 DRGL-VRSIADLYRLDAALLASLERM------GEQSASNLIEALAASRQRPWHRLLYALG 520

Query: 559 IRHVGAEIARSLAKYYLSY---QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           I H+G+  A++LA  + S+   Q+ ++E  N +               +G  I+Q++ ++
Sbjct: 521 IHHIGSVNAKTLAAAFPSWEALQSASEEALNELYG-------------IGPEISQSMQQW 567

Query: 616 YQNPRN---ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
                N   +  + AL L   S             +  + LV TGTL  + R +AQ  + 
Sbjct: 568 CSTEANQSLMAELAALELPLASDDSSAESAGAIGALTGQTLVLTGTLPNLSRLEAQALIE 627

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             G  V+  +S+KT+ ++ G   GSKL+KA++LGV +++E +   LL
Sbjct: 628 AAGGKVTGSVSKKTNYVVAGSEAGSKLQKAEKLGVAVIDEAELKALL 674


>gi|237804493|ref|YP_002888647.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231272793|emb|CAX09699.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 663

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 235/704 (33%), Positives = 380/704 (53%), Gaps = 53/704 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75
           +R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S  P   L 
Sbjct: 5   SRDDYIALCAELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           ++  G+  +    V HS P LS+  ++++++L +F +R     +K    S  ++LE KID
Sbjct: 65  DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S 
Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   ++   +  
Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSFKEAAKRKLDLSVYGL--ITDQKKRSH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +
Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDR 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+
Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D I+            +DIR+GD V V++ GEVIPK+V I + +R  ++ P+  PS C
Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESGPWKMPSLC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   
Sbjct: 404 PVCHEPVVKE--------KVSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+       I   +DIF L      +   ++ + GF D S+ NL  SI   + ++L+R +
Sbjct: 455 FE----VGLISSCSDIFAL------TEEDLKQVPGFKDRSIQNLLASIAGAKKVALDRLL 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +L I  VG+  A +LA ++ +       ++ +I  + D+ +S   +  +G  +A +IV 
Sbjct: 505 TALSIPFVGSSGAIALADHFGT-------LDKVIEASLDELMS---IEGIGPKVAASIVA 554

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+    N   +   ++E+   +   + +  + ++ K  VFTGTLQ++ R +A+E +  LG
Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVFTGTLQQMTRTQAEERIRSLG 613

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             VS+ +S+ T  +I G   G KL+KAQ LG+ I NE + L +L
Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRIL 657


>gi|169630426|ref|YP_001704075.1| NAD-dependent DNA ligase LigA [Mycobacterium abscessus ATCC 19977]
 gi|254781373|sp|B1MDV2|DNLJ_MYCA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169242393|emb|CAM63421.1| DNA ligase (polydeoxyribonucleotide synthase NAD+) [Mycobacterium
           abscessus]
          Length = 681

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 224/708 (31%), Positives = 362/708 (51%), Gaps = 45/708 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +++   L +E+  H   YY    P+I D ++D L RR  A+   +P+L     P+ P   
Sbjct: 6   QRQWGELAEEVRGHQFRYYVKDAPVISDGQFDELLRRLTALEEQYPEL---RTPDSPTQL 62

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +GG   ++ F+ V H    LSL+  ++ ++L  +  R+     ++ +    +  E KIDG
Sbjct: 63  VGGAGFVTEFRSVDHLERMLSLDNAFSSDELTAWDARVRGDIGQEPE----YLCELKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVY 192
             +++ YE G  V  A RGDG SGEDV+   R I  +P  L+ +    IP ++EVRGEV+
Sbjct: 119 VALSLVYENGVLVRGATRGDGRSGEDVTLNARTIEDVPERLAKSEKYPIPALLEVRGEVF 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
               DF ALN  ++   + P+ANPRN+A+G LR+ NP  IT  R L    HGLG+     
Sbjct: 179 FRLEDFEALNASLVEESKPPFANPRNSAAGSLRQKNPA-ITARRRLRMICHGLGRAEGFS 237

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  ++    +   G PV+    +      +    N     R  + ++IDG+V KVD  +
Sbjct: 238 PESLHDAYLALGEWGLPVSTHTTKVRGIAKVQERVNYWAEHRHDVEHEIDGVVVKVDTVA 297

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  +R+PRW I++K+  ++A+T LLDI + +GRTG +TP A + PV + G+ ++ 
Sbjct: 298 LQRRLGSTSRAPRWAIAYKYPPEEATTELLDIRVSVGRTGRVTPFAYMTPVKVAGSTVSL 357

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   +K         R G  + +GD V++++AG+VIP+V+  + + R+ + + F  
Sbjct: 358 ATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVADLRNGNEREFVM 406

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +  +   K G   A  RC    +C AQ  ER+ H   R AF+IE LG + 
Sbjct: 407 PTACPECGTTLAHE---KEGD--ADIRCPNSRSCPAQLRERVFHVAGRGAFDIEALGYEA 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                     A  I    D+F L       T   +   G    +   L D+++K +   L
Sbjct: 462 AIALLA----AGVIEDEGDLFGLTADDLLRTDLFKTKSGALSANGARLLDNLDKAKQQPL 517

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   AR+L          A E  ++ A        L  V  VG  IA 
Sbjct: 518 WRVLVALSIRHVGPTAARAL----------ATEFGDLEAIEGASVEQLAAVEGVGATIAA 567

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           A+V+++    +   V+        +    + ++   +E   +V TG+L    R +A+E +
Sbjct: 568 AVVDWFSVDWHRAIVDKWRAAGVRTADERDDSIPRNLEGLSIVVTGSLPGFSRDEAKEAI 627

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              G   ++ +S+KT  ++VGD+PGSK +KA +LGV I++E+ F  LL
Sbjct: 628 IARGGKSASSVSKKTAFVVVGDSPGSKYDKAVELGVTILDEDGFRALL 675


>gi|313123177|ref|YP_004033436.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279740|gb|ADQ60459.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 671

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 222/718 (30%), Positives = 380/718 (52%), Gaps = 55/718 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+P+L  ++ 
Sbjct: 2   AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELKSADS 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
                 ++GGE+N  L KV H +P LS+  +++ E+L +F  R+    QK   + + + +
Sbjct: 62  IT---QRVGGEVNSDLPKVEHQVPMLSMGDVFSKEELAEFDQRV----QKAIGHPVAYNV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YE+G+   A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE
Sbjct: 115 ELKIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSE 248
            Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++  +   + 
Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAG 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           I    Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+
Sbjct: 233 I--DSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDD 290

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ  LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G  +
Sbjct: 291 LALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGTTV 350

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+
Sbjct: 351 ARASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPY 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V  LN +      A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 400 EVPTKCPSCGEDLVH-LNEEV-----ALRCINP-SCPAQIEEGITHFASRQAMNIAGLGP 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I++ R  
Sbjct: 453 KIVKQLI-AKDLVHNV---ADLYYL------TADDLSQLEHFKEKSINNLLAAIDQSRKN 502

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI +VG + A          Q  AQ+  N+    +     L  +  +G  I
Sbjct: 503 SVELVLFGLGIDNVGRKAA----------QLIAQKFKNMSKIASASVQELTAIDTIGMTI 552

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++Q       + A L+E   +   +G   +   +  + K +V TG L    R +
Sbjct: 553 AESLTAYFQQ-EEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAE 611

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             + +  LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T
Sbjct: 612 FTKKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669


>gi|116628243|ref|YP_820862.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMD-9]
 gi|116101520|gb|ABJ66666.1| NAD-dependent DNA ligase [Streptococcus thermophilus LMD-9]
          Length = 648

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 226/692 (32%), Positives = 365/692 (52%), Gaps = 67/692 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R    +    P+L +++ P    +++GG +     K  H  P
Sbjct: 15  YYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPT---HRVGGLVLDGFEKYQHEYP 71

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  RI   +   D     +  E KIDG  I++ Y  G     A R
Sbjct: 72  LYSLQDAFSREELDAFDKRIKSEFPNAD-----YMAELKIDGLSISLTYVDGILQVGATR 126

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +F  +N +    G   +A
Sbjct: 127 GDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEFERINTQRQENGEAEFA 184

Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           NPRNAA+G LR+L+   +   R   FF    G T  +    Q ++L ++  LGF VN   
Sbjct: 185 NPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERLT---QNDVLNEVAELGFSVNPRR 241

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
              ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG   ++PRW I++KF  
Sbjct: 242 IVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEELGFTVKAPRWAIAYKFPA 301

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           ++   +LL +D Q+GRTG++TP A L PV + G  ++ ATLHN DYI             
Sbjct: 302 EEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIT-----------E 350

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCPICQSRVVRDLNPKTGK 451
           +DIR+GD V+V +AG++IP V+ ++ ++R   +A P   PS CP C S ++   +     
Sbjct: 351 KDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQEAMP--VPSQCPSCGSGLLHFEDE---- 404

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC    +C AQ  E L HF SRDA NI G+G   ++  FK+E     ++  ADI+
Sbjct: 405 --VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFKAE----LVKEVADIY 457

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L      ++     + GF + S   LY +I   +  S E+ ++ LGIRHVGA++++ L 
Sbjct: 458 GL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLYGLGIRHVGAKVSKQLL 511

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + + + +  A          + D  ++  V  +G++IA++I  ++         + LLKE
Sbjct: 512 ESFGTIKELA----------SADVQAIAAVDGLGEVIAKSIQRYFAKEE----AQVLLKE 557

Query: 632 VSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +  S G +   +  ++ +      K +V TG L+ ++R +A+  +  LGA V+  +S+KT
Sbjct: 558 LE-SYGVNLSYLGQKVTDDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAKVTGSVSKKT 616

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           D+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 617 DLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 648


>gi|326381521|ref|ZP_08203215.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
 gi|326199768|gb|EGD56948.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
          Length = 692

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 223/705 (31%), Positives = 358/705 (50%), Gaps = 43/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E + L +E+  H   YY    P+I D E+D L RR  A+    P+LA ++ P      +
Sbjct: 13  REWALLAEEVRGHQFRYYVQDAPVISDGEFDTLLRRLQALEDEHPELAVADSPT---KLV 69

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG  +     V H    +SL+ +++ +++R +++R     + +      F  E KIDG  
Sbjct: 70  GGGFSTDFTSVDHLERMMSLDNVFDHDEMRTWVSRT----EAEIGAGTEFLCELKIDGVA 125

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISK 195
           + + YE GK V    RGDG +GEDV+   R I  +P VL      +P ++EVRGEV+   
Sbjct: 126 LALVYENGKLVRGVTRGDGRTGEDVTLNARTITDVPHVLDDAVRPVPALLEVRGEVFFRV 185

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN  ++  G+ P+ANPRN+A+G LR+ NP     R+L    HG+GK      +  
Sbjct: 186 EDFQNLNASLVEDGKAPFANPRNSAAGSLRQKNPQITAKRHLRMICHGIGKIEGWRPESL 245

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++    +   G PV+   R+      IV   +     R ++ ++IDGLV KVD+ S Q++
Sbjct: 246 HDAYLALGEWGLPVSKHTRKVTGAGEIVKTIDYWGENRHSVEHEIDGLVVKVDDVSQQRR 305

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV + G+ +  ATLH
Sbjct: 306 LGATSRAPRWAIAYKYPPEEVTTKLLDIMVGVGRTGRVTPWALMEPVLVAGSTVARATLH 365

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K         R G  + +GD + +++AG+VIP+V+  +V  R    + F  P+ C
Sbjct: 366 NAFEVK---------RKG--VLIGDTITIRKAGDVIPEVLGPVVELRDGTEREFVMPTNC 414

Query: 435 PICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           P C +    +L P K G      RC    +C  Q  ERL +   R AF+IE LG +    
Sbjct: 415 PECGT----ELAPAKEGD--KDIRCPNQRSCPGQLRERLFYLAGRGAFDIEALGYEGAQA 468

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              S      +    D+F+L       T       G    +     D+++K +++ L R 
Sbjct: 469 LLSS----GVLADEGDLFSLTADDLIKTDLYTTKAGALSANGKRFLDNLDKAKHVPLWRV 524

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I +L IRHVG   AR+LA  +        ++  I A + +D   L +V  +G   A ++ 
Sbjct: 525 IVALSIRHVGPTPARALATAF-------GDLEAIQAASVED---LAQVDGLGPTRAASVH 574

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +++    +   V              + ++   +E K +V TG+L    R  A+E +   
Sbjct: 575 DWFAVDWHREIVAKWRAAGVSMADERDDSIERTLEGKTIVVTGSLVDFSRDGAKEAIISR 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G   S  +S+KTD ++VG+  GSK +KA+QLGV I++E+ F  LL
Sbjct: 635 GGKASGSVSKKTDYVVVGEAAGSKADKAEQLGVPILDEDGFKELL 679


>gi|290957204|ref|YP_003488386.1| DNA ligase [Streptomyces scabiei 87.22]
 gi|260646730|emb|CBG69827.1| putative DNA ligase [Streptomyces scabiei 87.22]
          Length = 739

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 235/742 (31%), Positives = 373/742 (50%), Gaps = 78/742 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++ + L ++I  H   YY    P++ D+E+D L R  +A+   + +L     P+ P  K
Sbjct: 23  REKHARLAEQIEEHRFRYYVKDAPVVSDAEFDELLRTLEALEDEYGEL---RTPDSPTQK 79

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPKID 135
           +  E    L +V H    LSL+ +++ E L  +  R+      KD  +  + L  E KID
Sbjct: 80  VAVEYETDLAEVEHRERMLSLDNVFDDEGLAAWAERV-----AKDVGTTDYHLLCELKID 134

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G+   AA RG G +GED++  +R I  IP R+    +P ++E+RGEVY  
Sbjct: 135 GLAVNLTYEDGRLTRAATRGTGRTGEDITPNVRTIAEIPHRLKGDRVPRLVEIRGEVYFP 194

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
              F  LN+  +A G KPYANPRN+ASG LR+ +P    T  L+  VHG+G   E F  G
Sbjct: 195 MEAFQGLNERRVAAGEKPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAL-EGFDGG 253

Query: 254 ---QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307
                E    +R  G P     R  +   G+   ++YY E    R ++ ++IDG V K+D
Sbjct: 254 FTRLSEAYDLLRSWGLPTAEHNRVVDDLDGVREFIAYYGEN---RHSVAHEIDGAVVKLD 310

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E  LQ +LG  AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ 
Sbjct: 311 EIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVAGSE 370

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQ 426
           +  ATLHN++ +K            +++ +GD V++++AG+VIP+++  +V+ R   + +
Sbjct: 371 VEFATLHNQEVVK-----------AKNVLIGDTVVIRKAGDVIPEILGPVVDLRDENETR 419

Query: 427 PFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           PF  P+ CP C +     L P K G +    RC    +C AQ  ER+ +   R+  +IE 
Sbjct: 420 PFVMPTECPECGT----PLRPMKEGDI--DLRCPNARSCPAQLRERVSYLAGRECLDIEH 473

Query: 486 LGKQQLDFFFKSEDPAFSIRI-PADIFTL--------------------QRRQQTSTTKI 524
            G        +  +PA    +   D+F L                    +   +T   K+
Sbjct: 474 FGGVAAAALTRPLEPADPPLVDEGDLFDLTVEKLLPIKAYVLDADSGLPKHDPKTGEPKV 533

Query: 525 ENIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
             +     G    +   L   I + ++  L RF+  L IRHVG   A++LA+ + S    
Sbjct: 534 VTVFANQKGEPKKNTLALLQKIEEAKSRPLARFLNGLSIRHVGPVAAQALAREFRSIDRI 593

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP--SIGR 638
            Q               L  V  VG I+A+A+ E++    +   +        P    G 
Sbjct: 594 EQATQE----------ELTAVDGVGAIVAKALEEWFAEEWHREIIRKWKAAGVPLEDRGA 643

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E      +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VG+NPGSK 
Sbjct: 644 GEDEGPRPLEGLTVVVTGTLEHHTRDGAKEALQNRGAKVTGSVSKKTSFVVVGENPGSKH 703

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
           +KA QL V ++NE+ F  LL+Q
Sbjct: 704 DKAMQLKVPVLNEDGFAVLLEQ 725


>gi|312278868|gb|ADQ63525.1| DNA ligase [Streptococcus thermophilus ND03]
          Length = 648

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 226/692 (32%), Positives = 365/692 (52%), Gaps = 67/692 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D+EYD L R    +    P+L +++ P    +++GG +     K  H  P
Sbjct: 15  YYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPT---HRVGGLVLDGFEKYQHEYP 71

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  RI   +   D     +  E KIDG  I++ Y  G     A R
Sbjct: 72  LYSLQDAFSREELDAFDKRIKSEFPNAD-----YMAELKIDGLSISLTYVDGILQVGATR 126

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +F  +N +    G   +A
Sbjct: 127 GDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEFERINTQRQENGEAEFA 184

Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           NPRNAA+G LR+L+   +   R   FF    G T  +    Q ++L ++  LGF VN   
Sbjct: 185 NPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERLT---QNDVLNEVAELGFSVNPRR 241

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
              ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG   ++PRW I++KF  
Sbjct: 242 IVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEELGFTVKAPRWAIAYKFPA 301

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           ++   +LL +D Q+GRTG++TP A L PV + G  ++ ATLHN DYI             
Sbjct: 302 EEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIT-----------E 350

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCPICQSRVVRDLNPKTGK 451
           +DIR+GD V+V +AG++IP V+ ++ ++R   +A P   PS CP C S ++   +     
Sbjct: 351 KDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQEAMP--VPSQCPSCGSGLLHFEDE---- 404

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC    +C AQ  E L HF SRDA NI G+G   ++  FK+E     ++  ADI+
Sbjct: 405 --VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFKAE----LVKEVADIY 457

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L      ++     + GF + S   LY +I   +  S E+ ++ LGIRHVGA++++ L 
Sbjct: 458 GL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLYGLGIRHVGAKVSKQLL 511

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + + + +  A          + D  ++  V  +G++IA++I  ++         + LLKE
Sbjct: 512 ESFGTIKELA----------SADVQAIAAVDGLGEVIAKSIQRYFAKEE----AQVLLKE 557

Query: 632 VSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +  S G +   +  ++ +      K +V TG L+ ++R +A+  +  LGA V+  +S+KT
Sbjct: 558 LE-SYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAKVTGSVSKKT 616

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           D+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 617 DLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 648


>gi|148927169|ref|ZP_01810794.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1]
 gi|147887384|gb|EDK72833.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1]
          Length = 675

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 221/712 (31%), Positives = 372/712 (52%), Gaps = 52/712 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+    L + +S +   YY   +P + D+ YD+L      +    P+L  ++ P     +
Sbjct: 7   RERAIKLRELLSQYSYEYYVLDRPSVADAIYDSLFGELKKLEAEHPELITADSPT---QR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG       KV H    LSL  +++ E++  ++ R+ +   + D+   FF  E K+DG 
Sbjct: 64  VGGVPIAKFQKVEHRTRMLSLNDVFSREEVEAWLLRVRKLAPEMDEKVEFFA-EVKMDGL 122

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN------IPEIIEVRGEV 191
             ++ YE GK V A  RGDG  GEDV++ +R IP++P  L  N      +  I EVRGE+
Sbjct: 123 ACSLIYENGKLVRAVTRGDGLVGEDVTSNVRTIPSVPLALRTNKEDWRFLKGITEVRGEI 182

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            + K DF  LN ++   G+K YANPRN A+G +R+L+P  +  R L F  + L +     
Sbjct: 183 VMFKKDFELLNAQLEQEGKKTYANPRNLAAGTIRQLDPRLVAQRKLYFLAYDLLRDDPAE 242

Query: 251 AKGQYEMLQKM-RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               +EM  ++ R LGF  N   +   +   +V +    +  R  LPY+ DG+V K+++ 
Sbjct: 243 VP-TWEMAYRIVRELGFRSNRDAKVIQSVDELVEFAESWEKKRFDLPYNTDGMVIKLNDR 301

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +L + LG   ++PR  I++K+  +QA+TR+ DI + IGRTG  TPVA LEPV I G+ + 
Sbjct: 302 ALYRALGVVGKNPRGAIAYKYPAEQATTRIKDIFVSIGRTGAATPVAMLEPVVIAGSTVQ 361

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNED +K         R G  + +GD V+V++AG++IP+V+  I   R+   + F 
Sbjct: 362 MATLHNEDEVK---------RKG--VLIGDTVVVQKAGDIIPEVISPIEKLRNGSEKAFK 410

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C++ +VR          A  RC   + C A+    ++HF S+ A +I+G+G++
Sbjct: 411 MPKNCPECETDLVRPEGE------AVWRCPNPI-CPAKTWRSIQHFASKAALDIDGMGEK 463

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +         A  I+  AD++ L++ Q      I  +  F D+S   L D+I  +++  
Sbjct: 464 NVAALLD----AGLIKDAADLYVLKKEQ------ILELERFADISAGKLIDAIAAKKHPP 513

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L +F+F+LGIRHVGA+ A  +  ++ S     Q   +           L  V  VG+++A
Sbjct: 514 LAKFLFALGIRHVGAQTAIDVTAHFGSLTAIRQATID----------QLHEVEGVGEVVA 563

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++IV ++++P +   ++   K         +      +     V TG+L  + R +A + 
Sbjct: 564 ESIVAWFEDPEHQALLDKFEKYGVQPQDVKQAPTKGPLAGIHFVITGSLHSLDREEAADK 623

Query: 670 VTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  LG +    + + TD ++ GDN  GSKL KA++ G KI++E++   ++++
Sbjct: 624 IRALGGIFQTAVGKNTDYLVAGDNVGGSKLAKAEKFGTKIIDEQKLRDMIRE 675


>gi|227889453|ref|ZP_04007258.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200]
 gi|227849931|gb|EEJ60017.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200]
          Length = 668

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 222/722 (30%), Positives = 378/722 (52%), Gaps = 70/722 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  +A +++  L +++    D YY    P++ D+ YD   +    +   FPDL  ++  
Sbjct: 4   LTHSEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTADSI 63

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       + + + +E
Sbjct: 64  T---QRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLV----GHPVAYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 117 LKIDGLSLSLEYTNGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G + +ANPRNAA+G LR+L+   IT  R L+ F++        
Sbjct: 175 YMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPRN 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +++
Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DY++            + +R+GD V + +AG++IP++  +++++R  D++P+ 
Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487
            P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG  
Sbjct: 402 IPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGPR 454

Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             KQ +D  F        I   AD++ L   Q      +  +  F + S+TNL  SI   
Sbjct: 455 IVKQLIDKGF--------INDVADLYHLTPDQ------LGQLDHFKEKSITNLLSSIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  S E  ++ LGI HVGA+ AR + + Y + +  +Q               L  +  +G
Sbjct: 501 KQNSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658
           + IA+++  ++  P    + + LL+E+  S      +G  E+       + K +V TG L
Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               R +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +
Sbjct: 607 SAFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666

Query: 719 QQ 720
           ++
Sbjct: 667 EK 668


>gi|19705038|ref|NP_602533.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|81485410|sp|Q8RI94|DNLJ_FUSNN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|19712952|gb|AAL93832.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 696

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 230/710 (32%), Positives = 384/710 (54%), Gaps = 58/710 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L ++++ + D YY  +K +I D E+D L +  +++   +P   + ++ + P   +G  + 
Sbjct: 34  LREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYP---QYKEISSPTTSVGASLK 90

Query: 84  LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
            + FK V H  P LSL   +NI ++ +FI RI +   K+ +  + + LE K+DG  I++ 
Sbjct: 91  ENKFKKVEHLHPMLSLANSYNIGEIVEFIERIKKKIPKEQE--LKYCLEVKLDGLSISLT 148

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    F  LN
Sbjct: 149 YRQGKLVRAVTRGDGFIGEDVTENILEIASIVKTLPQAID--MEIRGEVVLPLASFEKLN 206

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           +E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E ++ +
Sbjct: 207 NERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGLKSHSESIKFL 266

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             +G           T   I    N  +  R +LPY+ DGLV KVDE +L  ++G  +++
Sbjct: 267 ESMGIKTTGIFELLETSKDIEKRINYWEKERESLPYETDGLVIKVDEINLWDEIGYTSKT 326

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF   Q ST L D+  Q+GRTG LTPVA L+ V + G+ +  A+LHN   I+ 
Sbjct: 327 PRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNISEIQ- 385

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GDRV +++A E+IP+VV  I  ER  + +    P+ CPIC  ++
Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPTCCPICNHKL 435

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+        +   +C     C A+    +++FVSRDA NI GLG + ++ F    D  
Sbjct: 436 EREEG------LVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
           + I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   ++ +++LGI  
Sbjct: 486 Y-IKTVVDIFDLKNHREA----LENIDKMGKKSIENLLNSIEESKNRDYDKILYALGIAE 540

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   ++ LAK        ++ I+ ++A   +D   L  +  +G+I A  I+ F+   +N
Sbjct: 541 IGKVTSKILAKA-------SKNIDKLMAMTFED---LTSIEGIGEIAANEIIAFFTKEKN 590

Query: 622 ICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
              ++ L        +KE   S+    +NV+     K  +FTGTL+   R + +E + +L
Sbjct: 591 QKIIQGLKEKGLKFEIKESEASV----QNVNPNFVGKNFLFTGTLKHFTREQIKEEIEKL 646

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           G    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 647 GGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|300813135|ref|ZP_07093512.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300495889|gb|EFK31034.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 671

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 223/718 (31%), Positives = 386/718 (53%), Gaps = 55/718 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+P+L  ++ 
Sbjct: 2   AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDKKYARLLELEAAYPELKSADS 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
                 ++GGE+N  L KV H +P LS+  +++ E+L +F  R+    QK   + + + +
Sbjct: 62  IT---QRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRV----QKAIGHPVAYNV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YE+G+   A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE
Sbjct: 115 ELKIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSE 248
            Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++  +   + 
Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAG 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           I    Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+
Sbjct: 233 I--DSQHQAIGEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDD 290

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ  LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G  +
Sbjct: 291 LALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVQLAGTTV 350

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN D +  L           DIR+GD V + +AG++IP++ ++++++R  D+ P+
Sbjct: 351 ARASLHNPDLLAKL-----------DIRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPY 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V  L+ +      A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 400 EVPTKCPSCGEDLVH-LDKEV-----ALRCINP-SCPAQVEEGITHFASRQAMNIAGLGP 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I++ R  
Sbjct: 453 KIVKQLI-AKDLVHNV---ADLYYL------TADDLSQLDHFKEKSINNLLAAIDQSRKN 502

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI +VG + A+ +A+    ++N ++     IA  +   L+ I    +G  I
Sbjct: 503 SVELVLFGLGIDNVGGKAAQLIAR---KFKNMSK-----IASASVQELTAIDT--IGMTI 552

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++Q       + A L+E   +   +G   +   +  + K +V TG L    R +
Sbjct: 553 AESLTAYFQQ-EEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAE 611

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             + +  LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T
Sbjct: 612 FTKKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669


>gi|313896259|ref|ZP_07829812.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975058|gb|EFR40520.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 672

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 224/711 (31%), Positives = 359/711 (50%), Gaps = 46/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I+  + EL+ L ++I  +   YY  +   I D E+D L  R  AI   +P+L      N 
Sbjct: 4   IQMVKAELAELRRQIRRYSKQYYDDNASDISDYEFDQLMLRLKAIEAEYPELITK---NS 60

Query: 74  PLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P  K+GG    +    V H +P LSL+ +++  ++R F+  I   +   +     F +E 
Sbjct: 61  PTQKVGGSAQRTAGVLVKHDVPMLSLQDVFSEAEIRDFVAGIRAHFPAAE-----FVVEE 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           KIDG  + +RYE G    A  RGDG   GEDV+   R I  +   LS + P   EVRGEV
Sbjct: 116 KIDGLSLALRYENGVLARAVTRGDGIVQGEDVTENARMIADVREQLS-DAPVYFEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+ +  F A+N+    +G KP+ANPRN A+G LR+L+      R L+ FV  L +T    
Sbjct: 175 YMERAAFAAVNERQELLGLKPFANPRNCAAGTLRQLDARVTRERRLSMFVFNLQRTEGRT 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                     MR  G  +  G R   T   + +   E+ + R +LPYDIDG V KV++FS
Sbjct: 235 FASHTASYDFMRAQGIKIIAGYRVCRTADEVWAAIEEIGARRGSLPYDIDGAVVKVNDFS 294

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            + +LG  A++PRW I++K+  ++  T L +I++ +GRTG +TP A  +PV + G  +  
Sbjct: 295 QRAELGATAKAPRWAIAYKYPPEEKETVLREIELSVGRTGRITPTAVFDPVQLCGTRVER 354

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+DYI GL           D+R+GD +LV ++GE+IP+V  +++ +R     P+  
Sbjct: 355 ATLHNQDYIAGL-----------DVRIGDTILVYKSGEIIPRVKAVVLEKRPASTVPYVI 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP+C    VR+ +       A  +C   + C AQ    + HFVSR A +I+G G   
Sbjct: 404 GDTCPVCGEPAVREAD------TADMKCQNPV-CPAQVENHILHFVSRTAMDIKGFGTSA 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTL-QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           +         A  +   ADI+TL Q R +  ++    I+G  + +V  L D++   +  +
Sbjct: 457 VIALTH----AGYLHDIADIYTLHQHRDELISS---GIIGR-EKTVDKLLDAVAHSKENT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +  LGI  +G   A SL + + S    A+           D   ++ VP +G++ A
Sbjct: 509 PDRLLTGLGIAGIGRAAAISLMQEFPSVDALAEAARG-------DAEKILAVPDMGEVSA 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +++ EF+ +      +E         +    +   + +E K  V TGTL  + R +    
Sbjct: 562 RSLAEFFDSEAGRGLLEKFRAAGVNFVSAPRERTGTALEGKSFVITGTLPTLSREECAAL 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +T  G  V   +S+KTD ++ G+  GSKL KA+ LGV +++E     ++++
Sbjct: 622 ITAHGGTVKGSVSKKTDYLVAGEAAGSKLAKAEFLGVPVLDEAALRRMIEE 672


>gi|296119554|ref|ZP_06838112.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306]
 gi|295967437|gb|EFG80704.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306]
          Length = 700

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 226/721 (31%), Positives = 371/721 (51%), Gaps = 64/721 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+ E+A+K  + L QE+  H + YY   +P I D+++DAL +   A+  A P L     P
Sbjct: 10  LNPEEAQKRWAELAQEVRRHRELYYN-EQPAIPDADFDALFQELVALESAHPQLVV---P 65

Query: 72  NGPLNKIGGE--MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           + P  ++G     + +   + H    +SL+ ++N ++L+ ++ R           +  + 
Sbjct: 66  DSPTQEVGSAPAADSAFADIEHLERLMSLDNVFNADELQDWLDRT---------PAEAYL 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEII 185
            E KIDG  I + Y  GK   AA RGDG  GED++A  R I +IP  L  +    +P ++
Sbjct: 117 AELKIDGASIDLVYRDGKLATAATRGDGRVGEDITANARVIESIPHELQGSEEYPVPALV 176

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           E+RGE+Y+   DF ALN+E  + G++ +ANPRN+A+G LR  NP D+  R L    HGLG
Sbjct: 177 EIRGEIYMRPEDFEALNEERASEGKQAFANPRNSAAGGLRMKNPDDVKKRRLRLVAHGLG 236

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                    Q++    +   G PV+    +  T   +          R    +++DG+V 
Sbjct: 237 AREGFTPTSQHDAYAAIAAWGLPVSPYTERVTTSKEVQDKVKYWADHRHDAEFEMDGVVI 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+   Q+ LG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A ++PV + 
Sbjct: 297 KVDDLGSQRSLGATSRAPRWAIAYKYPPEEVTTKLRNIEVGVGRTGRVTPYAVMDPVFVS 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ ++ ATLHN+  +K         R G  + +GD V++++AGE+IP+V+  +  +R   
Sbjct: 357 GSTVSMATLHNQSEVK---------RKG--VLIGDTVIIRKAGEIIPEVLGPVEEKRDGT 405

Query: 425 AQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
              + FP  CP C ++    L P K G   A  RC     C AQ   RL++   R AF+I
Sbjct: 406 ETEWVFPENCPSCGTK----LAPQKEGD--ADWRCPNTRTCPAQLSARLEYLAGRGAFDI 459

Query: 484 EGLG-KQQLDFFFKSEDPAFSIRIPADIFTLQ----RRQQTSTTKIENILGFGDVSVTNL 538
           E LG K  +D   +       +   +D+F L     ++ +  TTK  N+   G   ++NL
Sbjct: 460 EALGEKGAIDLIERG-----VLEDESDLFDLTEELLKKSEVYTTKAGNVNASGKKLLSNL 514

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +    R+  L R + +L IRHVG   AR++A  Y           ++ A  + D   +
Sbjct: 515 ETA----RHTDLWRVLVALSIRHVGPTAARAIASRY----------GSLDAARSADVEDI 560

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGT 657
                VG +IA++  ++++   +   V+      V+ +I   +K   + +E   +V TGT
Sbjct: 561 AETDGVGLVIAESFKDWFEIDWHRTIVDKWAAAGVTMAIDASDKPEQT-LEGLTIVVTGT 619

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+   R  A+E +   G   S  +S+KTD ++ G+N GSK  KA+ LGV I+NE  F  L
Sbjct: 620 LENFSRDSAKEAIISRGGKASGSVSKKTDFVVAGENAGSKETKARDLGVTILNENGFETL 679

Query: 718 L 718
           L
Sbjct: 680 L 680


>gi|188995252|ref|YP_001929504.1| DNA ligase [Porphyromonas gingivalis ATCC 33277]
 gi|254781390|sp|B2RKL2|DNLJ_PORG3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188594932|dbj|BAG33907.1| DNA ligase [Porphyromonas gingivalis ATCC 33277]
          Length = 669

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 228/714 (31%), Positives = 370/714 (51%), Gaps = 56/714 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A+ IE+ R+ L         H+  YY  S P I D EYDA+ ++ + +   +P+    + 
Sbjct: 8   AVRIEELRRILRE-------HEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEW---DS 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P +++G +       V H  P LSL   +N +++  F  R+    Q           
Sbjct: 58  PDSPTHRVGSDKTEGFASVRHDRPMLSLSNTYNYDEIGDFYRRVSEGLQGA---PFEIVA 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           E K DG  I++ YE G  V A  RGDG  G+DV+A +R I ++P R+   + P ++EVRG
Sbjct: 115 ELKFDGLSISLIYEDGMLVRAVTRGDGIMGDDVTANVRTIRSVPLRLRGDDYPRMLEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E+ +   +F  +N +  A G   +ANPRNAASG +++L+P  +  R L+ + + L  + E
Sbjct: 175 EILLPFKEFDRINAQREAEGEPLFANPRNAASGTIKQLDPHIVAGRNLDAYFYYL-YSDE 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A+  Y+ L + R  GF V++ V    +   + ++ +   + R TLP   DG+V KV+ 
Sbjct: 234 PLAENHYDRLMQARQWGFKVSDAVTLCCSKEDVYAFIDRFDTERLTLPVATDGIVLKVNA 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q  LG  A+SPRW I++K+  ++  TRL  +  Q+GRTG +TPVA L+PV I G ++
Sbjct: 294 PAQQDLLGFTAKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVANLDPVLISGTVV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN D+I             +D+  GD V V++ GE+IPK+V +  + R  D +P 
Sbjct: 354 RRASLHNADFI-----------AEKDLHEGDFVYVEKGGEIIPKIVGVDTDARSIDGRPI 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            F   CP C + +VR+         AA+ C     C  QQ  RL+H+  R A +I  +G 
Sbjct: 403 VFTVLCPDCATPLVREQGE------AAYYCPNAEGCPQQQKGRLEHYCGRKAADI-NIGP 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++  +        IR  AD + L   Q      +  + GF   +   L DSI   +  
Sbjct: 456 ETIELLYSRN----MIRNVADFYALTEEQ------LLTLPGFKKRAAAKLLDSIEASKAR 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             +  +F LGIR VG  +A+ LA  Y S       I+ + A  +++   L+++  +G+ I
Sbjct: 506 PYQAILFGLGIRFVGETVAKKLAAVYPS-------IDALAAATSEE---LVQIDEIGERI 555

Query: 609 AQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A A++ F+   +N   +E L L  VS         VS+ +  K +V +GT +K  R + +
Sbjct: 556 AAAVLHFFSLRQNRELIERLRLAGVSLEAETVSVPVSARLAGKTVVISGTFEKYSRDEYK 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
             V   G  ++  +S KT  I+ G + G SK EKA++LGV++M+EE+FL L+++
Sbjct: 616 AMVEDNGGRMAGSVSSKTSFILAGSDMGPSKREKAEKLGVRLMSEEEFLRLIEE 669


>gi|313203539|ref|YP_004042196.1| DNA ligase, nad-dependent [Paludibacter propionicigenes WB4]
 gi|312442855|gb|ADQ79211.1| DNA ligase, NAD-dependent [Paludibacter propionicigenes WB4]
          Length = 676

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 233/710 (32%), Positives = 366/710 (51%), Gaps = 59/710 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++ SL +E+  H+  YY  S P I D E+DA  R+   +  A P+     DPN P  +
Sbjct: 3   KDQIESLRRELEQHNYNYYVKSAPTISDFEFDAKLRQLQELEAAHPEFF---DPNSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136
           +G ++     +V H  P LSL   ++  +++ F  R+     +K  N  F    E K DG
Sbjct: 60  VGSDIASGFEQVAHVYPMLSLGNTYSEGEVQDFYERV-----RKGLNEDFELVCELKYDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE G  V A  RGDG  G+DV+A ++ I +IP  L  N P+  E+RGE+ +  +
Sbjct: 115 TSISLTYEDGVLVRAVTRGDGEKGDDVTANVKTIRSIPLRLQGNYPKSFEIRGEILMPWS 174

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN---FFVHGLGKTSEIFAK 252
            F  LN E      + +ANPRNAASG L+  N + + +R L+   +++ G    S++ + 
Sbjct: 175 VFDDLNREREEQEEQLFANPRNAASGTLKLQNSSVVASRKLDAYLYYLLGENLPSDLHS- 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E L+     GF +++  +   T   + ++ N     R  LP   DG+V KV+  S Q
Sbjct: 234 ---ENLEAAHSWGFKISDATKVCRTLDEVSAFINYWDVERKNLPVATDGIVLKVNSLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G  +  A+
Sbjct: 291 RALGFTAKSPRWAIAYKFQAEKAVTRLNSVSYQVGRTGAVTPVANLDPVQLSGTTVKRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L           D+ +GD V V++ GE+IPK+  +  + R        F  
Sbjct: 351 LHNADIIEAL-----------DLHIGDMVFVEKGGEIIPKITAVDKDARLLIGDKVQFIK 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +VR          AAH C    AC  Q   +++HFVSR A NI+GLG + ++
Sbjct: 400 SCPECGAALVRFEGE------AAHYCPNENACPPQIKGKMEHFVSRKAMNIDGLGSETIN 453

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++ D   +I   ADI+TL   +     ++E +   G  S  N+ +   K + I  ER
Sbjct: 454 LLYQN-DLLHNI---ADIYTL---KVPDLIRLERL---GTKSAYNIKEGAEKSKEIPFER 503

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGIR VG  IA+ LA  +           NI A     +  L+ V  +G  IAQ++
Sbjct: 504 VVFALGIRFVGETIAKKLAYAF----------KNIEALEQASYDELVAVDEIGGRIAQSV 553

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEY 669
           V ++ +  NI  +   LKE    +   E  + +    +    +V +GT  K  R + +  
Sbjct: 554 VAYFSDSLNIEMLNR-LKEYGLQMSLSEDKLQAHGTALAGLSIVISGTFSKHSRDEYKTM 612

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + + G      +S KT  I+ GDN G  KL+KA++LGVK++NE+ FL ++
Sbjct: 613 IERNGGKNVGSVSAKTSFILAGDNMGPEKLKKAEKLGVKLVNEDDFLSMI 662


>gi|312863154|ref|ZP_07723392.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396]
 gi|322516268|ref|ZP_08069198.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC
           49124]
 gi|311100690|gb|EFQ58895.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396]
 gi|322125241|gb|EFX96614.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC
           49124]
          Length = 652

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 225/706 (31%), Positives = 371/706 (52%), Gaps = 63/706 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L  +++ +   YY    P + D++YD L R    +    P+L +++ P    +++
Sbjct: 3   KRMKELVSKLNQYAKEYYTEDNPSVSDADYDKLYRELVDLEVEHPELVQADSPT---HRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+   +   D     +  E KIDG  
Sbjct: 60  GGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRVKDEFPNAD-----YMAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +F
Sbjct: 115 ISLTYVDGVLQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N +    G   +ANPRNAA+G LR+L+   +  R L  F++     +E     Q ++
Sbjct: 173 ERINIQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFLYQEASPTERLT--QNDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDDLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    LL +D Q+GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R    +P   P+ CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQ-EPMEVPTQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  FK+
Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFKA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     ++  ADI+ L      ++     + GF + S   LY +I   +  S E+ ++ L
Sbjct: 452 E----LVKDVADIYGL------NSQDFLQLEGFKEKSAEKLYSAIQVSKENSAEKLLYGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA++++ L + + S Q  A          + D  ++  V  +GD+IA++I  ++ 
Sbjct: 502 GIRHVGAKVSKQLLEAFGSIQELA----------SADVEAIAAVDGLGDVIAKSIQRYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEYVT 671
                   + L+KE+  S G +   +  ++ +      K +V TG L+ ++R +A+  + 
Sbjct: 552 KEE----AQVLMKELE-SYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLE 606

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            LGA V+  +S+KTD+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 607 ALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652


>gi|295836378|ref|ZP_06823311.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB74]
 gi|295825992|gb|EDY45591.2| DNA ligase, NAD-dependent [Streptomyces sp. SPB74]
          Length = 818

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 234/744 (31%), Positives = 375/744 (50%), Gaps = 76/744 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+E S + +E+  H   YY   +P++ D+++DAL RR  A+    P L     P+ P 
Sbjct: 51  EVREEHSRVAREVDEHRYRYYVNDQPVVSDADFDALLRRLTALEEEHPQL---RTPDSPT 107

Query: 76  NKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
            K+ G+         V H    LSL+ +++ E L  +  R+ +   +       +  E K
Sbjct: 108 QKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAK---EVGAPGYHYLCELK 164

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG  GED++  +R I  IP  L+   +PE++EVRGEVY
Sbjct: 165 VDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGERVPELVEVRGEVY 224

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
               DF ALN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G   E F 
Sbjct: 225 FPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG-AREGFT 283

Query: 252 ----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  YE+L +    G P     + A++  G+ S+       R ++ ++IDG+V K+D
Sbjct: 284 IDRLSHAYELLHEW---GLPTAKHNKVADSLDGVRSFIRYYGEHRHSVEHEIDGVVVKLD 340

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E  LQ +LG  +R+PRW  + KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G+ 
Sbjct: 341 EIPLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAGSE 400

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + 
Sbjct: 401 VEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSERA 449

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP C +  +R +  K G +    RC    +C AQ  ER+ +   R + +IE LG
Sbjct: 450 FVMPAECPECGT-PLRAM--KEGDI--DLRCPNARSCPAQLRERIFYLAGRKSLDIEHLG 504

Query: 488 KQQLDFFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTKI-- 524
                   +  +P+   +R   D+F L                    +R   T   KI  
Sbjct: 505 YVAATALTQPLEPSEPPLRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPVTGEEKIVT 564

Query: 525 --ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
              N  G    +  ++ ++I   +   L + +  L IRHVG   A +LA+ + S      
Sbjct: 565 FFANKEGVAKKNALSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRS------ 618

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
            I+ I A   ++   L     VG  IA ++ ++Y    N    E L K  +  + R E +
Sbjct: 619 -IDRIFAAEENE---LAETEGVGPTIAASLKQWYDAEENDWHREILRKWKAAGV-RMEAD 673

Query: 643 VSSE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
            S        +E   +V TGTL++  R  A+E +   GA V+  +S+KT  ++VGDNPGS
Sbjct: 674 ESETDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGS 733

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQ 720
           K +KA  L V ++ E+ F  LL Q
Sbjct: 734 KYDKALSLKVPVLEEDGFAILLDQ 757


>gi|325288193|ref|YP_004263983.1| DNA ligase [Cellulophaga lytica DSM 7489]
 gi|324323647|gb|ADY31112.1| DNA ligase [Cellulophaga lytica DSM 7489]
          Length = 664

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 221/702 (31%), Positives = 359/702 (51%), Gaps = 49/702 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++ +L +E+  H+  YY    P I D ++D   +   A+    P+     D N P  +
Sbjct: 4   KEQIEALREELRKHNHNYYVLDTPTISDYDFDIKLKELQALEAKHPEFY---DANSPTLR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+  +   V H     SL+  ++ EDL  +  R+ +      D++I FT E K DG 
Sbjct: 61  VGGEITKNFNTVVHEHRMYSLDNSYSKEDLLDWEKRVEKIL---GDSNIEFTCELKYDGA 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE+GK V A  RGDG  G+DV+  I+ I ++P  L  + P   ++RGE+ +    
Sbjct: 118 SISLTYEEGKLVRAVTRGDGFQGDDVTTNIKTIKSVPLQLKGDYPAKFDIRGEIVLPFEG 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E IA G  PY NPRN ASG L+  + + +  R L   ++ +   + +  + Q+E
Sbjct: 178 FYKMNEERIANGEDPYMNPRNTASGSLKLQDSSLVAQRPLECLLYSV-VGANLNLETQFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V    +   +   ++++       R  LPY+ DG+V KV+    Q++LG
Sbjct: 237 ALEKTRSWGFKVPTVAKLCKSVDEVMAFVEYWDVHRHELPYETDGVVVKVNTLRYQEELG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  +Q ST L +I  Q+GRTG +TPVA L PV + G  +  A+LHN 
Sbjct: 297 YTSKSPRWAMAYKFKAEQVSTVLNEISYQVGRTGAITPVANLAPVLLAGTTVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           D+RVGD V V++ GE+IPK+V + ++ R  +++P  +   CP 
Sbjct: 357 DQIEKL-----------DVRVGDAVFVEKGGEIIPKIVGVNLDLRPQNSEPTKYIDHCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + ++R          A H C     C  Q   +++HF+SR A +I+GLG + ++  FK
Sbjct: 406 CNTELIRTEGD------AKHYCPNEYGCPPQITGKIQHFISRKAMDIDGLGSETVELLFK 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD++ L   Q     ++         S  NL   +     I  ER +F+
Sbjct: 460 EG----LIQNYADLYALTVDQLLPLERM------AKKSAENLVKGVAASVEIPFERVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ LAK Y           NI A      L L  V  +G+ IA ++V F+
Sbjct: 510 LGIRFVGETVAKKLAKAY----------KNIDALMYASALELATVDEIGERIASSVVAFF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           QN  N+  +  L           EK  N + +++ +  V +G  + + R+  ++ +   G
Sbjct: 560 QNEINLDIINRLKGYGLQFQVSAEKLLNQTEKLKGETYVVSGVFE-MSRNDLKKLIEDNG 618

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
             V + +S KT  ++ GD  G SK  KA+ L V I++E++FL
Sbjct: 619 GKVGSSISSKTTFLVAGDKMGPSKRTKAESLNVPIISEQEFL 660


>gi|307706499|ref|ZP_07643306.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321]
 gi|307617954|gb|EFN97114.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321]
          Length = 652

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 222/685 (32%), Positives = 367/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V  A R
Sbjct: 76  LYSLQDAFSREELEAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGESE 186

Query: 213 YANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   + TR L  F++   + S      Q ++L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVATRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGEERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    PS CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRLSE-EKLDIPSHCPSCDSHLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRD  NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDTMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            L         K E+ L   G  + S + LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RL---------KEEDFLLLEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +++ S +N AQ  ++ +A           +  +G +IA+++  ++    +   ++  
Sbjct: 513 LLLQHFHSIENLAQADSDEVAS----------IESLGSVIAKSLQTYFATEGSEILLKE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKNKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++ G + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646


>gi|254303498|ref|ZP_04970856.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148323690|gb|EDK88940.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 696

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 230/706 (32%), Positives = 381/706 (53%), Gaps = 50/706 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +++  + D YY  +K +I D E+D L +  +++   +P   + ++ + P   +G  + 
Sbjct: 34  LREDLDKYRDSYYNDNKSLISDYEFDILLKELESLEEKYP---QYKETSSPTTSVGASLK 90

Query: 84  LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
            + FK V H+ P LSL   +NI ++  FI RI +   K+ +  + + LE K+DG  I++ 
Sbjct: 91  ENKFKKVEHAHPMLSLANSYNIGEIVDFIERIKKKISKEQE--LKYCLEVKLDGLSISLT 148

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    F  LN
Sbjct: 149 YRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAID--MEIRGEVVLPLASFEKLN 206

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           +E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E ++ +
Sbjct: 207 NERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADKLGLKSHSESIKFL 266

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G  +++
Sbjct: 267 EAMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIGYTSKT 326

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF   Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN   I+ 
Sbjct: 327 PRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNISEIQ- 385

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GDRV +++A E+IP+VV  I  ER  + +    P+ CP+C  ++
Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPTHCPVCNHKL 435

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+      + +   +C     C A+    +++FVSRDA NI GLG + ++ F    D  
Sbjct: 436 ERE------EGLVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
           + I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   ++ I+SLGI  
Sbjct: 486 Y-IKTVVDIFDLKEHKEA----LENIDKMGKRSIENLLNSIEESKNRDYDKVIYSLGIPF 540

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   ++ LAK        ++ I+ ++    +D   L  +  +G+I A  I+ F+   +N
Sbjct: 541 IGKVASKVLAKA-------SRNIDKLMTMTFED---LTSIEGIGEIAANEIIAFFNKEKN 590

Query: 622 ICAVEALL-KEVSPSIGRHE---KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              ++ L  K +   I   E   +NV+     K  +FTGTL+   R + +E + +LG   
Sbjct: 591 QKIIQGLKEKGLKFEIKESEINVQNVNPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKN 650

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
            + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 651 LSSISKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|325911416|ref|ZP_08173828.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D]
 gi|325476766|gb|EGC79920.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D]
          Length = 672

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 230/717 (32%), Positives = 381/717 (53%), Gaps = 69/717 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L    DP
Sbjct: 4   LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG     L KV H  P LS+  +++ ++L +F  RI    QK   + + + +E
Sbjct: 61  DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVRGE 
Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G   +ANPRNAA+G LR+L+  ++T  R L+ F++      E 
Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +++
Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+ 
Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   +V        K   A RC   + C AQ  E + HF SR A NI GLG +
Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454

Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
              QL       D        AD++ L      S T++  +  F + S+ NL ++I   +
Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SATQLAKLDHFKEKSIQNLLNAIENSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+E  +F LGI HVGA+ AR +AK +        ++N I   +  D   L+++  +G 
Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAKKF-------HDLNTIRECSIAD---LMQIDTIGQ 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658
            IA+++V++++      +V+AL+ ++  +      +G  +     +   + K +V TG L
Sbjct: 552 TIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
               R    + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +
Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVI 664


>gi|152990877|ref|YP_001356599.1| NAD-dependent DNA ligase LigA [Nitratiruptor sp. SB155-2]
 gi|166216219|sp|A6Q433|DNLJ_NITSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151422738|dbj|BAF70242.1| DNA ligase, NAD-dependent [Nitratiruptor sp. SB155-2]
          Length = 660

 Score =  347 bits (890), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 228/692 (32%), Positives = 358/692 (51%), Gaps = 62/692 (8%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P + D  YD L R  +    A PD     DP  P  +IG E      K+ H  
Sbjct: 21  AYYVLDNPEVPDEVYDKLYREVEEYEKAHPDQI---DPTSPTQRIGAEPAKEFKKIKHLS 77

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
              S+E ++N  ++ +++ R+Y+   +KD   + F +EPK DG  + + YE G    AA 
Sbjct: 78  KMWSMEDVFNQREMHEWLERVYKNAGRKD---LQFYIEPKFDGASLNLIYENGLLKSAAT 134

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GEDV+A  + IP+IP  L ++   +IE+RGEV I K+DF  LN E    G   +
Sbjct: 135 RGDGEVGEDVTANAKTIPSIP--LGIDYKGLIEIRGEVVIRKDDFEKLNHERALKGESTF 192

Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF--PVNN 270
           ANPRNAA+G LR+L+P     R L F+   +G  +  F K Q+E +  +   GF  P   
Sbjct: 193 ANPRNAAAGSLRQLDPKVTAQRKLYFYPWDIGYNTLNF-KYQHEKMDFVYQQGFIKPFKR 251

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
            +        I   Y E    R  LP  +DG+V KVDE +L + LG   + PRWM+++KF
Sbjct: 252 AI--CENEEEIQQLYEEFSKERDKLPVMLDGMVVKVDEIALHEILGYTVKYPRWMVAYKF 309

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
              +  TR++DI  Q+GRTG++TPVA LEPV I G ++  ATLHN   I+          
Sbjct: 310 PAVEKMTRIIDIVPQVGRTGVITPVAILEPVEIEGVVVERATLHNYAEIE---------- 359

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
             +DIR+GD V+V R+G+VIP+V  ++   R    +    P  CP+C   V+ +     G
Sbjct: 360 -RKDIRIGDMVIVIRSGDVIPEVTKVLTQYRTGKEKKVERPKVCPVCGQPVLDE-----G 413

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
            L+   +C   L+C A+ +  + +F S+   +I GLG+  +   ++       ++   D+
Sbjct: 414 ILI---KCQ-NLSCPARVVNSIIYFASKQCLDISGLGEATVKLLYEK----GLVKDVVDL 465

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           F L++        +  + GF +    NL D+    + +   RF+ +LGI H+G   ++ L
Sbjct: 466 FKLKKED------LLRLPGFAEKKAQNLIDATQSVKGVECWRFVNALGIEHIGEVASKKL 519

Query: 571 A-KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
             K+ L +    +E              L  +   G  + ++I EF +   N   +E L+
Sbjct: 520 CEKFGLDWYKAPKE-------------KLYEIEGFGPEMVRSIEEFVE--VNKEKIEKLI 564

Query: 630 KEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           + + P+  + E+ V +S + +K +V TG + K+ R K +E + + GA V+  +S  TD +
Sbjct: 565 ELLQPTEPKKEEEVENSPLAHKTVVLTGEM-KLPRSKIKELLERAGAHVTNSVSHHTDYV 623

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             G+NPGSK +KAQQLGV ++ EE+   LL++
Sbjct: 624 FYGENPGSKFQKAQQLGVPLLPEEKMWELLKE 655


>gi|239928777|ref|ZP_04685730.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
 gi|291437098|ref|ZP_06576488.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
 gi|291339993|gb|EFE66949.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
          Length = 731

 Score =  347 bits (890), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 228/740 (30%), Positives = 367/740 (49%), Gaps = 72/740 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR++   L ++I  H   YY    P+I D+E+D   R    +     +      P+ P 
Sbjct: 15  EAREQHVQLAEQIEEHRFRYYVNDAPVISDAEFD---RLLRELEALEEEYPELRTPDSPT 71

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G        V H    LSL+  +N +DL  +  R+ R   +  +    F  E K+D
Sbjct: 72  QKVAGSYETEFTAVRHRSRMLSLDNTFNDDDLAAWTERVRR---ELGEQEYHFLCELKVD 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE+G+   AA RGDG +GED++  +R I  +P R+    +P+++E+RGEVY  
Sbjct: 129 GLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTIAEVPDRLKGDRVPDLVEIRGEVYFP 188

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
              F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G         
Sbjct: 189 MEKFEELNRRLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHLVVHGIGALEGFEGMT 248

Query: 254 QY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           +  E    ++  G P +   R  +   G+  +       R ++ ++IDG+V K+DE  LQ
Sbjct: 249 RLSEAYDLLKSWGLPTSRHNRVVDDLGGVREFIAHYGENRHSVEHEIDGVVVKLDEIRLQ 308

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  AT
Sbjct: 309 GRLGSTARAPRWAIAYKYAPEEVNTKLVDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFAT 368

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F  P 
Sbjct: 369 LHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPG 417

Query: 433 FCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            CP C +     L P K G +    RC    AC AQ  ERL +   R A +IE  G    
Sbjct: 418 ECPECGT----PLRPMKEGDV--DLRCPNARACPAQLRERLFYLAGRKALDIEHFGYVAA 471

Query: 492 DFFFKSEDPA-FSIRIPADIFTL--------------------QRRQQTSTTKIENIL-- 528
               K  +PA   ++   D+F L                    +R  +T   KI  +   
Sbjct: 472 AALTKPLEPADPPLKDEGDLFDLTVDQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFAN 531

Query: 529 --GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + ++I   +   L R +  L IRHVG   A +LA+ + S       I+ 
Sbjct: 532 QEGKAKKNALAMLENIAAAKERPLARLLTGLSIRHVGPVAAEALARAFRS-------IDR 584

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
           I   + ++   L     VG+I+A A+ +++    +      ++++   +  R E   S E
Sbjct: 585 IEEASEEE---LKNTEGVGEIVAAAVKQWFAEEWH----REIIRKWKAAGVRMEDEGSGE 637

Query: 647 ------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
                 +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +K
Sbjct: 638 DEGPRPLEGLTVVVTGTLEHFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDK 697

Query: 701 AQQLGVKIMNEEQFLFLLQQ 720
           A QL V ++NEE    LL Q
Sbjct: 698 AMQLKVPVLNEEGLNVLLGQ 717


>gi|309808880|ref|ZP_07702761.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a]
 gi|308167878|gb|EFO70015.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a]
          Length = 672

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 230/717 (32%), Positives = 381/717 (53%), Gaps = 69/717 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L    DP
Sbjct: 4   LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG +   L KV H  P LS+  +++ ++L +F  RI    QK   + + + +E
Sbjct: 61  DSITQRVGGNIKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVRGE 
Sbjct: 117 LKIDGLSLSLEYKVGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G   +ANPRNAA+G LR+L+  ++T  R L+ F++      E 
Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +++
Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+ 
Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   +V        K   A RC   + C AQ  E + HF SR A NI GLG +
Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454

Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
              QL       D        AD++ L      S  ++  +  F D S+ NL ++I   +
Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+E  +F LGI HVGA+ AR +AK +        ++N I   +  D   L+++  +G 
Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAKKF-------HDLNTIRECSIAD---LMQIDTIGQ 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658
            IA+++V++++      +V+AL+ ++  +      +G  +     +   + K +V TG L
Sbjct: 552 TIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
               R    + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +
Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVI 664


>gi|322392021|ref|ZP_08065484.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780]
 gi|321145119|gb|EFX40517.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780]
          Length = 652

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 219/686 (31%), Positives = 365/686 (53%), Gaps = 67/686 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A P+      PN P +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELEQAHPEQVL---PNSPTHRVGGKILDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+  ++ +  E KIDG  I++ YE+G  V  A R
Sbjct: 76  LYSLQDAFSREELLAFDARV-----RKELPNVTYICELKIDGLSISLTYEQGVLVVGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE ++  VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEALDMTVRGECYMPRASFDQVNQSRQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRNSQEQVLKHLEQLGFVVNPR 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A++   +  +  E+   R  LPYDIDG+V KV++   Q+QLG   ++P+W +++KF 
Sbjct: 245 RVLAHSMDEVWQFIQEVGQERDQLPYDIDGVVIKVNDLVGQEQLGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------S 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C+S+++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRISE-EKLDIPTNCPSCESKLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNISGLGPSMVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L             + G  + +   LY +I   +  S E+ +F LGIRHVG++ ++ L 
Sbjct: 462 RLTEHD------FLQLEGVKEKTAQKLYQAIQASKENSAEKLLFGLGIRHVGSKASKLLV 515

Query: 572 KYYLSYQNFAQ----EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           +++ S +  AQ    E++NI                +G +IA+++  ++    +   +  
Sbjct: 516 QHFHSIETLAQADPEEVSNI--------------ETLGSVIAKSLQTYFATEGSKILLRE 561

Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
            LKE+  S+    + V+ +  +    +V TG L+++ R +A+  +  LGA V+  +S+KT
Sbjct: 562 -LKELGVSLDYKGQVVAGDAALSGLTVVLTGKLERLNRSEAKSKLESLGAKVTGSVSKKT 620

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNE 711
           D+++ G + GSKL+KAQ+LG++I +E
Sbjct: 621 DLVVAGADAGSKLQKAQELGIEIRDE 646


>gi|312875390|ref|ZP_07735394.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b]
 gi|311089053|gb|EFQ47493.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b]
          Length = 672

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 230/717 (32%), Positives = 381/717 (53%), Gaps = 69/717 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L    DP
Sbjct: 4   LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG +   L KV H  P LS+  +++ ++L +F  RI    QK   + + + +E
Sbjct: 61  DSITQRVGGNIKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVRGE 
Sbjct: 117 LKIDGLSLSLEYKVGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G   +ANPRNAA+G LR+L+  ++T  R L+ F++      E 
Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +++
Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+ 
Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   +V        K   A RC   + C AQ  E + HF SR A NI GLG +
Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454

Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
              QL       D        AD++ L      S  ++  +  F D S+ NL ++I   +
Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+E  +F LGI HVGA+ AR +AK +        ++N I   +  D   L+++  +G 
Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAKKF-------HDLNTIRECSIAD---LMQIDTIGQ 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658
            IA+++V++++      +V+AL+ ++  +      +G  +     +   + K +V TG L
Sbjct: 552 TIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
               R    + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +
Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVV 664


>gi|322375289|ref|ZP_08049802.1| DNA ligase, NAD-dependent [Streptococcus sp. C300]
 gi|321279552|gb|EFX56592.1| DNA ligase, NAD-dependent [Streptococcus sp. C300]
          Length = 652

 Score =  346 bits (888), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 224/685 (32%), Positives = 365/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V  A R
Sbjct: 76  LYSLQDAFSREELEAFDARV-----RKELPQPTYICELKIDGLSISLTYEKGVLVVGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLEHLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A +   I  +  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W I++KF 
Sbjct: 245 RILAKSIDEIWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAIAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR GD V+V +AG++IP V+ ++ ++R  + +    PS CP C S ++   +     
Sbjct: 354 EKDIRKGDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPSNCPSCDSHLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            L         K E+ L   G  + S + LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RL---------KEEDFLLLEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +++ S +N AQ           D   +  +  +G +IAQ++  ++    +   ++  
Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGGVIAQSLQTYFATEGSKILLDE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L+++ R +A+  +  LGA V+  +S+KT+
Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKVTGSVSKKTN 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++ G + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646


>gi|228904740|ref|ZP_04068794.1| DNA ligase [Bacillus thuringiensis IBL 4222]
 gi|228854754|gb|EEM99358.1| DNA ligase [Bacillus thuringiensis IBL 4222]
          Length = 656

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 227/699 (32%), Positives = 368/699 (52%), Gaps = 62/699 (8%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           E++  +  YY   KPI  D+EYD L      I    P+   +  P+   N++GGE+    
Sbjct: 14  ELTMLNHHYYTMDKPIASDAEYDRLYDELVKIEELHPEWTVAHSPS---NRVGGEVLDKF 70

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
            K  H++P  SLEK    + +RKF+  +     K++  +  FT+E K+DG    +RY  G
Sbjct: 71  EKKEHTMPLYSLEKSQTYDGVRKFVEDV-----KREFPNATFTIEQKMDGLANVLRYSGG 125

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
            F     RG G  GE VS  I+ I +IP  L++    +IE RGEV++  + F A N  + 
Sbjct: 126 SFSEGRTRGTGKIGEIVSEQIKTIRSIP--LNIRFQGVIEPRGEVFMPISGFEAYNASL- 182

Query: 207 AVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
             G  P  NPRN A+G LR L+P    +R L+ F + +  +  I  + Q EM+  ++  G
Sbjct: 183 PEGEAPLKNPRNGAAGALRNLDPRIAASRPLDAFWYDIAYSEGITFETQAEMMTFLQEQG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F +N      ++   I+    EMK +R TL +DIDG+V KV+E  ++++LG  ++ P+W 
Sbjct: 243 FKINPYFYVTDSIDVIIEKLEEMKEVRPTLNWDIDGMVIKVNELHIREELGYTSKFPKWA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I++KF   + +T L  +  ++GRTG LTP+A LEPV+IGG  +T ATL+N D        
Sbjct: 303 IAYKFEAVEETTTLNSVTWEVGRTGKLTPLAHLEPVDIGGTTVTKATLNNYD-------- 354

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
             ++R G  ++VG  V V+R+ +VIP+++ I+      +  P   P+ CP C++ +V+D 
Sbjct: 355 -DILRKG--VKVGAEVFVRRSNDVIPEIMGIVEGSEGTEIVP---PTHCPECETVLVQD- 407

Query: 446 NPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                    AH RC    +CSAQ + +  HF SR+A NI+   ++  +  F+    A  I
Sbjct: 408 --------GAHLRCMNIDSCSAQSVGKFTHFASREAMNIDSFSEKTAEQLFE----AGLI 455

Query: 505 RIP-ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           R    D++ L R +     +      FG+     L  +I + ++ +LE FI++LG+RH G
Sbjct: 456 RNSFVDLYRLDRNELLKLDR------FGERKADRLLAAIEESKSRTLEAFIYALGMRHSG 509

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A  L +YY          NNI    N     L+R+  +G  +AQ+I +++ N RN+ 
Sbjct: 510 KGTAERLLRYY----------NNIDDIANASVEDLMRIEDIGSAVAQSIFDYFHNERNLQ 559

Query: 624 AVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
            +E  LK +  ++  H   VSS  ++E    V TG + +  R + + ++ + G   S  +
Sbjct: 560 MIEE-LKALGLTL-THVAAVSSGNQLEGNTFVITGKVSR-PRKEIEAFIKEHGGKASGSI 616

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S+ T+ ++ G+  GSKL KAQ LGV ++ EEQ   ++ +
Sbjct: 617 SKNTNYLVAGEAAGSKLAKAQSLGVTVITEEQLYKMVNE 655


>gi|55821530|ref|YP_139972.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMG
           18311]
 gi|55823458|ref|YP_141899.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus CNRZ1066]
 gi|81559086|sp|Q5LYL9|DNLJ_STRT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81560280|sp|Q5M382|DNLJ_STRT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|55737515|gb|AAV61157.1| DNA ligase [Streptococcus thermophilus LMG 18311]
 gi|55739443|gb|AAV63084.1| DNA ligase [Streptococcus thermophilus CNRZ1066]
          Length = 652

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 226/708 (31%), Positives = 371/708 (52%), Gaps = 67/708 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L  +++ +   YY    P + D+EYD L R    +    P+L +++ P    +++
Sbjct: 3   KRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPT---HRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+   +   D     +  E KIDG  
Sbjct: 60  GGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRVKSEFPNAD-----YMAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +F
Sbjct: 115 ISLTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYE 256
             +N +    G   +ANPRNAA+G LR+L+   +   R   FF      T  +    Q +
Sbjct: 173 ERINTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEASPTERLT---QND 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAIQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++   +LL +D Q+GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R   +A P   PS CP
Sbjct: 350 DYIT-----------EKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQEAMP--VPSQCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  F
Sbjct: 397 SCGSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K+E     ++  ADI+ L      ++     + GF + S   LY +I   +  S E+ ++
Sbjct: 450 KAE----LVKEVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLY 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRHVGA++++ L + + + +  A          + D  ++  V  +G++IA++I  +
Sbjct: 500 GLGIRHVGAKVSKQLLESFGTIKELA----------SADVQAIAAVDGLGEVIAKSIQRY 549

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEY 669
           +         + LLKE+  S G +   +  ++ +      K +V TG L+ ++R +A+  
Sbjct: 550 FAKEE----AQVLLKELE-SYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAK 604

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  LGA V+  +S+KTD+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 605 LEALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652


>gi|94988258|ref|YP_596359.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS9429]
 gi|94992132|ref|YP_600231.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS2096]
 gi|122986939|sp|Q1JCM1|DNLJ_STRPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123080420|sp|Q1JMJ7|DNLJ_STRPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94541766|gb|ABF31815.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS9429]
 gi|94545640|gb|ABF35687.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS2096]
          Length = 652

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 222/699 (31%), Positives = 368/699 (52%), Gaps = 62/699 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL+ L     Y    YY    P + DS+YD L R    +  ++P+    + P     ++
Sbjct: 6   KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG  
Sbjct: 60  GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  F
Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
            A+N+     G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q E+
Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLYQ--EASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELAGLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+   +    P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFI 554
              A  +   ADI+ L +         EN +   G  + S   L  +I   ++ S E+ +
Sbjct: 450 --LAGFVHDVADIYQLTK---------ENFMQLDGIKEKSADKLLAAIEASKSNSAEKLL 498

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRH+G++++R + + Y        +I+ ++    ++   + R+  +G  IAQ++ +
Sbjct: 499 FGLGIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQ 548

Query: 615 FYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +++       V+ L    V+      + N  + +    +V TG L ++ R++A++ +  L
Sbjct: 549 YFEQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEAL 608

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           GA V+  +S+KTD++I G + GSKLEKA+ LG++I +E+
Sbjct: 609 GAKVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647


>gi|166154367|ref|YP_001654485.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 434/Bu]
 gi|166155242|ref|YP_001653497.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335620|ref|ZP_07223864.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis L2tet1]
 gi|254781287|sp|B0B9Q4|DNLJ_CHLT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781289|sp|B0BBD3|DNLJ_CHLTB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|165930355|emb|CAP03841.1| NAD-dependent DNA ligase [Chlamydia trachomatis 434/Bu]
 gi|165931230|emb|CAP06795.1| NAD-dependent DNA ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 663

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 379/704 (53%), Gaps = 53/704 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75
           +R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S  P   L 
Sbjct: 5   SRDDYIALCTELVEHDRRYYALNQPTISDYSYDMKMRELQEIEVQHPEWKVSWSPTMYLG 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           ++  G+  +    V HS P LS+  ++++++L +F +R     +K    S  ++LE KID
Sbjct: 65  DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S 
Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   ++   +  
Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +
Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDR 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+
Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS C
Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   
Sbjct: 404 PVCHEPVVKE--------KVSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+       I   +DIF L      +   ++ + GF D S+ NL  SI   + ++L+R +
Sbjct: 455 FE----VGLISSCSDIFAL------TEEDLKQVPGFKDRSIQNLLASIAGAKKVALDRLL 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +L I  VG+  A +LA ++ +       ++ +I  + D+   L+ +  +G  +A +IV 
Sbjct: 505 TALSIPFVGSSGAIALADHFGT-------LDKVIEASLDE---LMSIEGIGPKVAASIVA 554

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+    N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  LG
Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLG 613

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             VS+ +S+ T  +I G   G KL+KAQ LG+ I NE +   +L
Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESKLSRIL 657


>gi|322411466|gb|EFY02374.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 652

 Score =  346 bits (887), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 222/681 (32%), Positives = 357/681 (52%), Gaps = 55/681 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    + + +P+    + P      +GG +     K  H  P
Sbjct: 19  YYTNDSPSVSDSEYDKLYRELVELENQYPEHVLQDSPT---QNVGGTLLTGFDKYQHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     K +     +  E KIDG  I++ YE G+    A R
Sbjct: 76  LFSLQDAFSREELDAFDKRV-----KSEFPDATYLAELKIDGLSISLSYENGQLQVGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+++  ++ I  IP+VL    P  I VRGE Y+S+  F A+N+E    G   +A
Sbjct: 131 GDGSIGENITENLKQIKDIPQVLPQ--PLTITVRGEAYMSRQSFKAINEERQENGETEFA 188

Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+   +  R L  F++   + S      Q  +L+ +  LGF VN    
Sbjct: 189 NPRNAAAGTLRQLDTAVVAKRQLATFLYQ--EASPTTRSQQDHVLKALADLGFSVNQRYH 246

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
            +++   I ++   +++ R  L YDIDG+V KV+  ++Q++LG   ++PRW I++KF  +
Sbjct: 247 LSSSMDEIWNFIQTVEAEREQLAYDIDGIVIKVNNLAMQEELGFTVKAPRWAIAYKFPAE 306

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +    +L +D  +GRTG++TP A L  V + G  ++ ATLHN DYI             +
Sbjct: 307 EKEAEILSVDWTVGRTGVVTPTANLTSVQLAGTTVSRATLHNVDYI-----------AEK 355

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR+GD V++ +AG++IP V+ +I ++R     P   PS CP CQS +V   +       
Sbjct: 356 DIRIGDTVIIYKAGDIIPAVLRVISDKRQEQV-PMWIPSQCPSCQSDLVHFEDE------ 408

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
            A RC   L C +     L+HF SR+A NI GLG   ++  F     A  +   ADI+ L
Sbjct: 409 VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLF----LAGLVHDVADIYKL 463

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            +        + ++ G  + S   L  +I   ++ S E+ +F LGIRH+GA+ +R + + 
Sbjct: 464 TKED------LLHLDGIKEKSAEKLLAAIETSKSNSAEKLLFGLGIRHIGAKASRLILET 517

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
                     I +++    +D   +  +  +G +IA+++V+++Q    I  VE  LK   
Sbjct: 518 -------CGNIEHLLTVREED---IATIDGLGMVIAKSLVQYFQQDSAILLVEE-LKNAG 566

Query: 634 PSIGRHEKNVSSEIE--NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
            ++    + + S  E     +V TG L+K+ R+ A+  +  LGA V+  +S+KT+++I G
Sbjct: 567 VNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLGAKVTGSVSKKTNLVIAG 626

Query: 692 DNPGSKLEKAQQLGVKIMNEE 712
            + GSKLEKAQ LG++I  EE
Sbjct: 627 SDAGSKLEKAQALGIRIEGEE 647


>gi|322387936|ref|ZP_08061543.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779]
 gi|321141209|gb|EFX36707.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779]
          Length = 652

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 220/683 (32%), Positives = 367/683 (53%), Gaps = 61/683 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+      P+ P +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELEIAYPEQVL---PDSPTHRVGGKILDGFKKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+ + + +  E KIDG  I++ YE+G F   A R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKELDDVTYICELKIDGLSISLTYEQGIFAAGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+++  ++ +  IP  LS  I   I VRGE Y+ ++ F  +N      G   +A
Sbjct: 131 GDGSVGENITENLKRVKDIPLSLSEKID--ITVRGECYMPRDSFNQVNLARQENGEPEFA 188

Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+   +  R L  F++   + S      Q ++L  +  LGF VN    
Sbjct: 189 NPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLNHLEQLGFVVNPRRL 246

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
            A++   +  +  E+   R  LPYDIDG+V KV++ + Q+QLG   ++P+W +++KF  +
Sbjct: 247 LAHSMDEVWEFIQEVGQERDQLPYDIDGVVIKVNDLTGQEQLGFTVKAPKWAVAYKFPAE 306

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI             +
Sbjct: 307 EKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEK 355

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C+S+++   +       
Sbjct: 356 DIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLGIPTNCPSCESKLLHFEDE------ 408

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
            A RC     C AQ  E L HF SRDA NI GLG   ++  F     A  ++  ADI+ L
Sbjct: 409 VALRCINP-QCPAQIKEGLIHFASRDAMNISGLGPSIVEKLF----AANLVKDVADIYRL 463

Query: 514 QRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
                     +E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++ L
Sbjct: 464 ---------TVEDFLVLDGIKEKSAQKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLL 514

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
            +++ S ++ AQ     +A           +  +G++IAQ++  +++       + + LK
Sbjct: 515 LQHFHSIESLAQANPEEVAS----------IESLGNVIAQSLQSYFET-EGAKILLSELK 563

Query: 631 EVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           E+  ++    + V+  + +    +V TG L+++ R +A+  +  LGA V+  +S+KTD++
Sbjct: 564 ELGVNLDYKGQVVAVDAALSGLTVVLTGKLERLTRSEAKSKLENLGAKVTGSVSKKTDLV 623

Query: 689 IVGDNPGSKLEKAQQLGVKIMNE 711
           + G   GSKL+KAQ+LG++I +E
Sbjct: 624 VAGAEAGSKLQKAQELGIEIRDE 646


>gi|297191909|ref|ZP_06909307.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721112|gb|EDY65020.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 736

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 235/741 (31%), Positives = 367/741 (49%), Gaps = 75/741 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QAR+E + L ++I  H   YY    P+I D+E+D L R  + +   +P+L     P+ P 
Sbjct: 21  QAREEHALLAEQIEEHRFRYYVKDSPVISDAEFDKLLRELEGLEERYPEL---RTPDSPT 77

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G+    L KV H    LSL+  ++  +L  +  R+ R           F  E K+D
Sbjct: 78  QKVAGDYETELTKVEHRERMLSLDNAFDDAELAAWAERVAR---DVGAPGYHFLCELKVD 134

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YEKG+   AA RGDG  GED++   R I  IP R+    IP ++E+RGEVY  
Sbjct: 135 GLAVNLTYEKGRLTRAATRGDGRVGEDITPNARTIAGIPDRLGGDRIPRLVEIRGEVYFP 194

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
              F  LN   +A G +PYANPRN+ASG LR+ +P    T  L   VHG+G    +    
Sbjct: 195 MEQFQELNARRVAAGEQPYANPRNSASGSLRQKDPKVTATLPLRMVVHGIGAREGLTIDR 254

Query: 254 QYEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +    +R  G P    N  V         ++Y+ E    R ++ ++IDG+V K+DE  
Sbjct: 255 LSQAYDLLREWGLPTARHNKVVGSLEEVREFIAYFGEH---RHSVEHEIDGVVVKLDEIP 311

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  AR+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  
Sbjct: 312 LQGRLGSTARAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 371

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    + F  
Sbjct: 372 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVM 420

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C +  +R +      L    RC    +C AQ  ERL +   R A +IE  G   
Sbjct: 421 PAECPECGT-ALRPMKEGDVDL----RCPNARSCPAQLRERLFYLAGRKALDIEHFGYVA 475

Query: 491 LDFFFKSEDPAFSIRI-PADIFTL--------------------QRRQQTSTTKIENIL- 528
                +  +PA    +   D+F L                    +R  +T   KI  +  
Sbjct: 476 AAALTQPLEPAEPPLVDEGDLFDLTMEQLLPIKAYVLDQDSGLPKRDPKTGEDKIATVFA 535

Query: 529 ---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
              G    +   + ++I   +   L R I  L IRHVG   A +LA+ + S     Q   
Sbjct: 536 NQKGEPRRNAVAMLENIAAAKERPLARIITGLSIRHVGPVAAEALAREFRSIDRIEQATE 595

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
                       L  V  VG  IA A+ ++++   +      +L++   +  R E++ S 
Sbjct: 596 E----------ELAAVDGVGPTIAAALKQWFEEDWH----REILRKWRAAGVRTEEHGSG 641

Query: 646 E------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           E      +E   +V TGTL+   R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +
Sbjct: 642 EDAGPRPLEGLTVVVTGTLENHTRDGAKEALQSLGAKVAGSVSKKTSFVVVGDNPGSKYD 701

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           KA QL V +++E  F  LL++
Sbjct: 702 KAVQLKVPVLDESGFAVLLEE 722


>gi|225870290|ref|YP_002746237.1| DNA ligase [Streptococcus equi subsp. equi 4047]
 gi|254781420|sp|C0M6L2|DNLJ_STRE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225699694|emb|CAW93413.1| DNA ligase [Streptococcus equi subsp. equi 4047]
          Length = 652

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 219/704 (31%), Positives = 366/704 (51%), Gaps = 57/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DSEYD L R    +   +P     + P      
Sbjct: 2   KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILKDSPT---QL 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K  H  P  SL+  ++ E+L  F  RI   + + +     +  E KIDG 
Sbjct: 59  VGSTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRIKSAFPEAE-----YLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG  GE+++  I+ I  IP+ LS  +   + +RGE Y+S+  
Sbjct: 114 SISLVYEAGVLKVGATRGDGTIGENITENIKNIKDIPKRLSQALD--VTIRGEAYMSRQA 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255
           F  +N+E    G   +ANPRNAA+G LR+L+   + +     F    +G  +   A  Q 
Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLYQEVGLET---ADSQQ 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L+++  LGF VN+    +++ + I  +   +++ R  LPY+IDG+V KV++ ++Q++L
Sbjct: 229 KTLERLADLGFSVNSHYLLSSSMNDIWDFIQSIEASREELPYEIDGVVVKVNQLAIQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++    ++ +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR+GD V+V +AG++IP V+ ++  +R  D  P   P+ CP
Sbjct: 349 VDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKRR-DQAPMPIPTACP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            CQS++V   +        A RC   L C +     L+HF SR A NI GLG   ++  +
Sbjct: 397 SCQSQLVHFEDE------VALRCINPL-CPSLVQRSLEHFASRQAMNIAGLGPAVVEKLY 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  +   ADI+ L      S   +  + G  + S   L  +I + +  S E+ +F
Sbjct: 450 S----AGLVHDVADIYRL------SLEDLLTLDGIKEKSAEKLLAAIEQSKANSAEKLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRH+GA+ +R + + Y        ++  ++A   ++   L ++  +G +I Q++V++
Sbjct: 500 GLGIRHIGAKASRLILEAY-------GDLEALLAVTAEE---LAQIDGLGLVIGQSLVQY 549

Query: 616 YQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +Q       + A LK    ++       +  + +    +V TG L+K+ R +A E + QL
Sbjct: 550 FQQ-EQAAQLLAELKSAGVNLAYLGQRPDQQAALFGLTVVLTGKLEKLNRTQAMEKLEQL 608

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           GA V+  +S+KTD+++ G   GSKL KAQQLG++I +E+  L L
Sbjct: 609 GAKVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652


>gi|305431677|ref|ZP_07400846.1| NAD-dependent DNA ligase LigA [Campylobacter coli JV20]
 gi|304445272|gb|EFM37916.1| NAD-dependent DNA ligase LigA [Campylobacter coli JV20]
          Length = 647

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 231/692 (33%), Positives = 369/692 (53%), Gaps = 70/692 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYDAL R        F +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDALIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L+++W++ED+  F     R W K+      F +EPK DG  + + YE GK V  A 
Sbjct: 74  ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++N  E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVLEIDNIPK--TINYKEKIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  G+G+ +  F K   E++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           ++       ++  YNE+ S+R   P  +DG+V +VD+ +L K+LG   + P++M + KF 
Sbjct: 244 IKLCANLDEVLKAYNELLSLRDQKPMMMDGMVVRVDDLALCKELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +    R       S P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+   +C   + C  + +  + HFVS+   NI+GLG+  ++  FK +     I     IF
Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLFKEK----KINTLESIF 459

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+       +  E + GF +  + N+ ++I + R+  L RFI +LGI H+G   A+ LA
Sbjct: 460 HLK------FSDFEGLEGFKEKKINNILNAIEQARDCELFRFITALGIEHIGEVAAKKLA 513

Query: 572 KYYLSYQNFAQEIN--NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ-NPRNICAVEAL 628
                  +F +E +  ++ A+ N        +   G+ +A ++ EF + N   I     L
Sbjct: 514 ------LSFGKEWHKQSLEAYAN--------LEGFGEQMALSLCEFSRVNSARIDEFYKL 559

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           L      +   E +V   I  K  V TG L +  R + +  +  LG  VS  +S+KTD +
Sbjct: 560 LNLKEQKVQIQEDSV---IFGKTFVITGALSR-PRDEFKNLIESLGGKVSGSVSKKTDYV 615

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + G   GSKL+KAQ+LGVK ++E +F  L+++
Sbjct: 616 LFGQEAGSKLDKAQELGVKCIDENEFNELIEK 647


>gi|167770441|ref|ZP_02442494.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM
           17241]
 gi|167667036|gb|EDS11166.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM
           17241]
          Length = 664

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 210/708 (29%), Positives = 363/708 (51%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E A++ +  L   I  H+  YY   +P + D EYD L      +  AFP+LA    P  
Sbjct: 7   LESAKRRVQELRTVIEKHNHSYYVLDRPTVSDYEYDRLLHELIDLEEAFPELASDHSPT- 65

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++GG    +   V H +   SL+ +++  +L  F  R+    ++       + +EPK
Sbjct: 66  --RRVGGAALNTFAPVRHEVQMGSLQDVFDTAELEAFDARVREQIERP-----VYIVEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + + Y+ G F   + RGDG +GEDVS  ++ + +IP  L   +P +IEVRGEVY+
Sbjct: 119 IDGLSVALEYQDGVFFRGSTRGDGVTGEDVSENLKTVRSIPMTLPEALP-LIEVRGEVYM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
            ++ F  +    +    +P+ NPRNAA+G LR+ +      R L+ FV  + +       
Sbjct: 178 PRSSFERVVARQLENEEEPFKNPRNAAAGSLRQKDSRVTAQRGLDIFVFNIQRIEGKTLS 237

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           G  E L  M+ LGF V    +  +     ++    + + R   P+DIDG V KVD+F+ +
Sbjct: 238 GHKESLDYMKSLGFKVIPSYKAFDNISDAIAEVERIGAQRYEFPFDIDGAVIKVDDFAQR 297

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  ++ P+W ++ K+  ++  + L DI+I++GRTG LTP A  EP+ + G  ++ A 
Sbjct: 298 EALGATSKFPKWAVAFKYPPEEKQSVLRDIEIKVGRTGALTPTAVFEPITLAGTTVSRAV 357

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFP 431
           LHN+D+I             + I +GD ++V++AG++IP+VV +    RH PDA  +  P
Sbjct: 358 LHNQDFIN-----------EKGIAIGDTIVVRKAGDIIPEVVSVA---RHQPDAPVYQIP 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S   R+         A  RC   +AC AQ    L HF SRDA +I+G+G   +
Sbjct: 404 AVCPSCGSTAEREEGE------AVLRCV-NMACPAQVARNLTHFASRDAMDIDGMGPAIV 456

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                    A  ++  AD+++L + Q  +  ++      G+ S  NL  ++ + ++  L 
Sbjct: 457 HQLLA----AGLVKSAADLYSLTQAQLAALERM------GERSAQNLIAALEQSKSRDLA 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +++LGIR +G   A+ LA+ + +       ++ ++A + ++   + ++   G I+AQ 
Sbjct: 507 RLLYALGIRGIGQRSAQLLAQRFGT-------MDGVLAASVEE---IAQIDGFGGIMAQN 556

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             +F+    N   ++  L+    ++       +  +  K  V TGTL  + R +A+  + 
Sbjct: 557 TADFFALEPNRALIDR-LRAAGLNMACTSAPTADTLSGKIFVLTGTLPTLTRGEAKAMIE 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G  VS  +S+KTD ++ G+  GSKL KA +LGV +++E     +L+
Sbjct: 616 AAGGKVSGSVSKKTDYVVAGEEAGSKLRKAGELGVAVLDEAALRAMLE 663


>gi|195977913|ref|YP_002123157.1| NAD-dependent DNA ligase LigA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|254781421|sp|B4U2C7|DNLJ_STREM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|195974618|gb|ACG62144.1| DNA ligase LigA [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 652

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 219/707 (30%), Positives = 370/707 (52%), Gaps = 63/707 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DSEYD L R    +   +P     + P      
Sbjct: 2   KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILKDSPT---QL 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  RI   + + +     +  E KIDG 
Sbjct: 59  VGGTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRIKSAFPEAE-----YLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG  GE+++  I+ I  IP+ LS  +   + +RGE Y+S+  
Sbjct: 114 SISLVYEAGILKVGATRGDGTIGENITENIKNIKDIPKRLSQALD--VTIRGEAYMSRKA 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255
           F  +N+E    G   +ANPRNAA+G LR+L+   + +     F    +G  +   A  Q 
Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLYQEVGLEA---ADSQQ 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L+++  LGF VN+    +++ + I  +   +++ R  LPY+IDG+V KV++ ++Q++L
Sbjct: 229 RTLERLADLGFSVNSHYLLSSSMNDIWDFIQSIEATREELPYEIDGVVVKVNQLAIQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++    ++ +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR+GD V+V +AG++IP V+ ++  +R  +  P   P+ CP
Sbjct: 349 VDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKRS-NQTPMPIPTACP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            CQS++V   +        A RC   L C +     L+HF SR A NI GLG   ++  +
Sbjct: 397 SCQSQLVHFEDE------VALRCINPL-CPSLIQRSLEHFASRQAMNIAGLGPAVVEKLY 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLER 552
                A  +    DI+ L          +E++L   G  + S   L  +I + +  S E+
Sbjct: 450 S----AGLVHDVTDIYRL---------SLEDLLMLDGIKEKSAEKLLAAIEQSKANSAEK 496

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+GA+ +R + + Y        ++  +++   ++   L ++  +G +I Q++
Sbjct: 497 LLFGLGIRHIGAKASRLILETY-------GDLETLLSVTAEE---LAQIDGLGLVIGQSL 546

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           V+++Q  +    + A LK    ++       +  +E+    +V TG L+K+ R +A+E +
Sbjct: 547 VQYFQQDQ-ATQLLAELKSAGVNLAYLGQRPDRQAELFGLTVVLTGKLEKLNRTQAKEKL 605

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            QLGA V+  +S+KTD+++ G   GSKL KAQQLG++I +E+  L L
Sbjct: 606 EQLGAKVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652


>gi|307720805|ref|YP_003891945.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294]
 gi|306978898|gb|ADN08933.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294]
          Length = 650

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 226/697 (32%), Positives = 371/697 (53%), Gaps = 69/697 (9%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLNKIGGEMNLSLF 87
           +YH   YY    PI+ D  YD L +  +    A P D+ +    N P  ++G  ++    
Sbjct: 17  AYH---YYVLDDPIMTDEVYDKLYKEVEQYEEAHPEDILK----NSPTQRVGDVVSEGFA 69

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H     SLE I++ + L+K++ ++YR      D+ + F  EPK DG  + + YE G+
Sbjct: 70  KEPHLSRMWSLEDIFDADGLKKWLEKVYRL-----DSHVTFYCEPKYDGASLNLVYENGE 124

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
                 RGDG  GE ++  ++ I T+P  LS+   E+IE+RGEV I K++F  +N E + 
Sbjct: 125 LQKGITRGDGTVGERITQNVKTIHTVP--LSIEHKELIEIRGEVVIFKDEFDKINKERLK 182

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
            G  P+ANPRNAA+G LR+L+P+    R L F  +G+G  + +  K   + +  +  LGF
Sbjct: 183 KGEPPFANPRNAAAGSLRQLDPSITAARNLVFLPYGVG-VNTLPHKLLNDKMSYIYELGF 241

Query: 267 --PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
             P    + +   +  I + Y  MK  R +    +DG+V KV+E + Q  +G   + PRW
Sbjct: 242 RKPPLRAITKG--YDEIEAIYERMKEERESYSMMLDGMVVKVNEIAAQIDMGYTVKVPRW 299

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            +++KF   +  TRL +I +Q+GRTG++TPVA +EP  I GA++  ATLHN D I+ +  
Sbjct: 300 AVAYKFPAVEKITRLKNIILQVGRTGVVTPVAVVEPTEIEGAVVERATLHNFDEIERM-- 357

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                    DIR+GD+V++ R+G+VIPK+V ++  ER         P+ CP+C S ++++
Sbjct: 358 ---------DIRIGDQVIILRSGDVIPKIVKVLTQERDGSEVKIERPTHCPVCGSELLQE 408

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                       +C   L C A+ +  + +F S+   NI+GLG + ++  F     A  +
Sbjct: 409 --------EVLIKCQ-NLKCEARVVNSIIYFASKQCLNIDGLGNKIVEQLFN----AGLV 455

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           R   D+F+L      +  K+  + GF +    NL  SI   +   L RFI +LGI H+G 
Sbjct: 456 RSVLDLFSL------TQEKLLELEGFKEKKAQNLLRSIENAKGCELWRFINALGIEHIGE 509

Query: 565 EIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ-NPRNI 622
             ++ +A+ + L Y            H N +   L+ +  +GD +A++ +EF + N   +
Sbjct: 510 VASKRIAEAFGLEY-----------IHQNKE--QLLTIEGIGDEMAESYLEFMRVNEETV 556

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++ +L+ V P   + E+   +  + K++V TGT+ +  R   +E +  LGA VS  +S
Sbjct: 557 VKLQEILRPVEPK--KREEAQDNPFKGKRIVLTGTMSE-PRPVIKEKLEDLGAKVSGSVS 613

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +KTD +I G++ GSK +KA  LGVK + E++   LLQ
Sbjct: 614 KKTDYVIYGEDAGSKYDKAISLGVKTLTEDELKELLQ 650


>gi|94994051|ref|YP_602149.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10750]
 gi|123257616|sp|Q1J7G9|DNLJ_STRPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94547559|gb|ABF37605.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10750]
          Length = 652

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 222/699 (31%), Positives = 367/699 (52%), Gaps = 62/699 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL+ L     Y    YY    P + DS+YD L R    +  ++P+    + P     ++
Sbjct: 6   KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG  
Sbjct: 60  GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  F
Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
            A+N+     G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q E+
Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLYQ--EASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+   +    P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFI 554
              A  +   ADI+ L +         EN +   G  + S   L  +I   ++ S E+ +
Sbjct: 450 --LAGFVHDVADIYQLTK---------ENFMQLDGIKEKSADKLLAAIEASKSNSAEKLL 498

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRH+G++++R + + Y        +I+ ++    ++   + R+  +G  IAQ++ +
Sbjct: 499 FGLGIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQ 548

Query: 615 FYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +++       V+ L    V+      + N  + +    +V TG L ++ R++A++ +  L
Sbjct: 549 YFEQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEAL 608

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           GA V+  +S+KTD++I G + GSKLEKA+ LG++I +E+
Sbjct: 609 GAKVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647


>gi|302537077|ref|ZP_07289419.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
 gi|302445972|gb|EFL17788.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
          Length = 736

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 228/738 (30%), Positives = 370/738 (50%), Gaps = 71/738 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR++   L +++  H   YY   +P++ D+E+D L R  +A+   +P+L     P+ P  
Sbjct: 14  AREQHQLLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRSLEALEEQYPEL---RTPDSPTQ 70

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+ G        V H    LSL+  ++ E+L  +  R+ R     D     +  E K+DG
Sbjct: 71  KVAGAYETDFASVEHRERMLSLDNAFDDEELSAWADRVARDVNTPD---YHYLCELKVDG 127

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             + + YE G+   AA RGDG +GED++  +R I  IP R+    IP ++E+RGEVY   
Sbjct: 128 LAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPALVEIRGEVYFPM 187

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN  ++    KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       + Q
Sbjct: 188 EKFEELNARLVEASGKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGFEIERQ 247

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +  + +R  G P     +  ++   +  +       R ++ ++IDG+V K+DE +LQ +
Sbjct: 248 SQAYELLREWGLPTARHNKVVSSLAEVREFIALFGENRHSVEHEIDGVVVKLDEIALQGR 307

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  ATLH
Sbjct: 308 LGSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFATLH 367

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N++ +K            + + +GD V++++AG+VIP+++  +V+ R    + F  P+ C
Sbjct: 368 NQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPALC 416

Query: 435 PICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           P C +    +L P K G +    RC  G  C AQ  ER+ +   R + +IE  G      
Sbjct: 417 PECGT----ELRPMKEGDIDV--RCPNGQTCPAQLRERIYYLAGRQSLDIENFGIVAAAA 470

Query: 494 FFKSEDPAFSIRI-PADIFTL--------------------QRRQQTSTTKIENIL---- 528
                +PA    +   D+F L                    +R  +T   KI  +     
Sbjct: 471 LTGPLEPAQPPLLDEGDLFDLTIEQLLPIKAYVRDPDSGLPKRDPKTGEEKIVTVFANQK 530

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           G    +   + ++I   +   L R I  L IRHVG   A +LA+ + S     Q      
Sbjct: 531 GEPKKNALAMLENIAAAKQRPLARIINGLSIRHVGPVAAEALAREFRSIDRIEQATEE-- 588

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-- 646
                    L     VG IIA ++ E++     +   + +L++   +  R E+  S+E  
Sbjct: 589 --------ELTATEGVGAIIAASLKEWFA----VDWHQEILRKWRAAGVRMEEEGSAEEE 636

Query: 647 ----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
               +E   +V TGTLQ   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA 
Sbjct: 637 GPRPLEGLTVVVTGTLQNHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAV 696

Query: 703 QLGVKIMNEEQFLFLLQQ 720
           QLG+ I+++  F  LL+Q
Sbjct: 697 QLGLAILDDAGFEVLLEQ 714


>gi|297202535|ref|ZP_06919932.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
 gi|197709937|gb|EDY53971.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
          Length = 730

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 229/745 (30%), Positives = 380/745 (51%), Gaps = 82/745 (11%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR++ + L ++I  H   YY    P++ D+++D L R  +A+   +P+L     P+ P 
Sbjct: 14  EAREKHAQLAEQIEEHRFRYYVNDAPVVSDADFDKLLRSLEALEDEYPEL---RTPDSPT 70

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPK 133
            K+ G        V H    LSL+  ++ E+L  +  R+      KD  +  + L  E K
Sbjct: 71  QKVAGAYETEFTSVQHRSRMLSLDNAFSDEELAAWAERV-----AKDVGTTDYHLLCELK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP R+    +P+++E+RGEVY
Sbjct: 126 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGDKVPDLVEIRGEVY 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G   E F 
Sbjct: 186 FPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAL-EGF- 243

Query: 252 KGQYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            G   + Q    ++  G P     +  +   G+  +       R ++ ++IDG V K+DE
Sbjct: 244 DGMTRLSQGYDLLKSWGLPTAKHNKVVDGLDGVREFIAYFGENRHSVEHEIDGAVVKLDE 303

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ +LG  +R+PRW I++K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +
Sbjct: 304 IPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAGSEV 363

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN+D +K        ++G   + +GD V++++AG+VIP+++  +V+ R    + F
Sbjct: 364 EFATLHNQDVVK--------LKG---VLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREF 412

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG- 487
             P+ CP C +  +R +      L    RC     C AQ  ERL +   R + +IE  G 
Sbjct: 413 VMPAECPECGT-ALRPMKEGDVDL----RCPNARTCPAQLRERLFYLAGRKSLDIEHFGY 467

Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTL--------------------QRRQQTSTTKIE 525
                L    +  DP  +     D+F L                    +R  +T   K+ 
Sbjct: 468 VAAAALTQPLEPSDPPLTDE--GDLFDLTIEQLLPIKAYVLDQDSGLPKRDPKTGEEKVA 525

Query: 526 NIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            +     G    +   + ++I   ++  L R +  L IRHVG   A +LA+ + S     
Sbjct: 526 TVFANQQGEPKKNAVAMLENIAAAKDRPLARVLTGLSIRHVGPVAAEALARNFRSIDRIE 585

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           Q     +A+ +           VG IIA+++ E++    +    + +L++   +  R E+
Sbjct: 586 QASEEELANTDG----------VGSIIAKSLKEWFAEDWH----QEILRKWKAAGVRMEE 631

Query: 642 NVSSE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
             S E      +E   +V TGTL++  R  A+E +   GA V+  +S+KT  ++VGDNPG
Sbjct: 632 EGSGEDEGPRPLEGLTVVVTGTLERFTRDGAKEALQSKGAKVTGSVSKKTSFVVVGDNPG 691

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           SK +KA QL V ++NE+ F  LL+Q
Sbjct: 692 SKYDKAMQLKVPVLNEDGFDVLLEQ 716


>gi|19745839|ref|NP_606975.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS8232]
 gi|94990137|ref|YP_598237.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10270]
 gi|139474058|ref|YP_001128774.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes str.
           Manfredo]
 gi|81632934|sp|Q8P1L1|DNLJ_STRP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123258039|sp|Q1JHP3|DNLJ_STRPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216247|sp|A2RFD0|DNLJ_STRPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|19747987|gb|AAL97474.1| putative DNA ligase [Streptococcus pyogenes MGAS8232]
 gi|94543645|gb|ABF33693.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10270]
 gi|134272305|emb|CAM30559.1| DNA ligase [Streptococcus pyogenes str. Manfredo]
          Length = 652

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 220/696 (31%), Positives = 366/696 (52%), Gaps = 56/696 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL+ L     Y    YY    P + DS+YD L R    +  ++P+    + P     ++
Sbjct: 6   KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG  
Sbjct: 60  GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  F
Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
            A+N+     G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q E+
Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLYQ--EASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+   +    P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKED------FMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + + Y        +I+ ++    ++   + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L    V+      + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647


>gi|50913936|ref|YP_059908.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10394]
 gi|81372213|sp|Q5XCY8|DNLJ_STRP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50903010|gb|AAT86725.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10394]
          Length = 652

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 220/696 (31%), Positives = 366/696 (52%), Gaps = 56/696 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL+ L     Y    YY    P + DS+YD L R    +  ++P+    + P     ++
Sbjct: 6   KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG  
Sbjct: 60  GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  F
Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
            A+N+     G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q E+
Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLYQ--EASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+   +    P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKED------FMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + + Y        +I+ ++    ++   + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L    V+      + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647


>gi|258648381|ref|ZP_05735850.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259]
 gi|260851551|gb|EEX71420.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259]
          Length = 677

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 228/722 (31%), Positives = 376/722 (52%), Gaps = 57/722 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I   +  +  L +E+  H+  YY  + P ILD+++DAL +    +    P+ A   D 
Sbjct: 2   IAIMNEKDRIDFLRKELHRHNYNYYVKNNPEILDADFDALMQELADLEQKHPEWA---DN 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++G +++    +V H  P LSL   ++  ++++F  RI    +    ++     E
Sbjct: 59  NSPTVRVGSDLSNDFVQVRHQYPMLSLGNTYDKAEIKEFYDRITGDLKG---SAFEICCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRG 189
            K DG  I++ YE G+ + A  RGDG  G+DV+  I+ I +IP  L   L  P   EVRG
Sbjct: 116 LKFDGLSISLLYEDGRLIRAVTRGDGSVGDDVTENIKTIKSIPLQLQEGLGWPRRFEVRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTS 247
           EV +    F  LN E    G   +ANPRNAASG L+  N   + +R L+ +  + LG+  
Sbjct: 176 EVLMPWASFEKLNTERETNGEPLFANPRNAASGTLKSKNSAVVASRRLDAYLYYVLGE-- 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +I  K  YE L  ++  GF V+  +  + +   I +Y +   + R  LP   DG+V KVD
Sbjct: 234 DIPKKSHYENLLMIKKWGFKVSENIHLSKSLDNIYAYIDHWDTERRYLPVATDGIVLKVD 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             + Q+QLG  A+SPRW I++KF  ++A T LLD+  Q+GRTG +TPVA ++PV + G  
Sbjct: 294 NLNQQQQLGSTAKSPRWAIAYKFKAERARTHLLDVIYQVGRTGAVTPVAVMDPVLLAGTT 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426
           +  A+LHNED I+ L           D+   D V V++AGE+IP++V +  + R+     
Sbjct: 354 VKRASLHNEDIIQQL-----------DLHYNDFVFVEKAGEIIPQIVGVDKDARNESLGD 402

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              F + CP C + ++R  N       AA  C     C  Q   R++HF+SRDA +I  L
Sbjct: 403 KVHFITQCPECGTHLIRFPNE------AATYCPNDATCPPQIKGRIEHFISRDAMDINSL 456

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV---SVTNLYDSIN 543
           G + +D +++       I   AD++ L         +IE++ G       S   + + I 
Sbjct: 457 GPETIDNYYERG----LIHDIADLYKL---------RIEDLAGSDATRLKSARKIIEGIE 503

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K ++   +R +++LGIR VG  +A++LA Y+ S       ++ + A   ++   L++V  
Sbjct: 504 KSKSTPFDRVLYALGIRFVGKVVAKTLAAYFHS-------MDALQAATLEE---LLQVEG 553

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG  IA+ + +++ +P N+  ++ L            + VS+ +  K +V +GT  +  R
Sbjct: 554 VGQTIAENVRQWFMSPTNLQILDRLTVAGLQMTADVSRQVSNRLAGKSIVISGTFTRHSR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            + +  + + G      +S+KTD I+ GDN G SK  KA+ LG+ ++ EE FL +L + +
Sbjct: 614 EEYKAIIEENGGKNVGSISKKTDFILAGDNMGPSKRTKAEALGIPLLQEEAFLAMLDEES 673

Query: 723 TT 724
           TT
Sbjct: 674 TT 675


>gi|225868755|ref|YP_002744703.1| DNA ligase [Streptococcus equi subsp. zooepidemicus]
 gi|225702031|emb|CAW99626.1| DNA ligase [Streptococcus equi subsp. zooepidemicus]
          Length = 652

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 220/707 (31%), Positives = 370/707 (52%), Gaps = 63/707 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DSEYD L R    +   +P     + P      
Sbjct: 2   KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILKDSPT---QL 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  RI   + + +     +  E KIDG 
Sbjct: 59  VGGTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRIKSAFPEAE-----YLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG  GE+++  I+ I  IP+ LS  +   + +RGE Y+S+  
Sbjct: 114 SISLVYEAGVLKVGATRGDGTIGENITENIKNIKDIPKRLSQALD--VTIRGEAYMSRQA 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255
           F  +N+E    G   +ANPRNAA+G LR+L+   + +     F    +G  +   A+ Q 
Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLYQEVGLEA---AESQQ 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L+++  LGF VN+    +++   I  +   +++ R  LPY+IDG+V KV++ ++Q++L
Sbjct: 229 RTLERLADLGFSVNSHYLLSSSMTDIWDFIQSIEATREQLPYEIDGVVIKVNQLAIQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++    ++ +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR+GD V+V +AG++IP V+ ++  +R  +  P   P+ CP
Sbjct: 349 VDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKRS-NQTPMPIPTACP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            CQS++V   +        A RC   L C +     L+HF SR A  I GLG   ++  +
Sbjct: 397 SCQSQLVHFEDE------VALRCINPL-CPSLIQRSLEHFASRQAMAIAGLGPAVVEKLY 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLER 552
                A  +   ADI+ L          +E++L   G  + S   L  +I + +  S E+
Sbjct: 450 S----AGLVHDVADIYRL---------SLEDLLTLDGIKEKSAEKLLAAIEQSKANSAEK 496

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRHVGA+ +R + + Y        ++  +++   ++   L ++  +G +I Q++
Sbjct: 497 LLFGLGIRHVGAKASRLILETY-------GDLETLLSVTAEE---LAQIDGLGLVIGQSL 546

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           V+++Q  +    + A LK    ++       +  +E+    +V TG L+K+ R +A+E +
Sbjct: 547 VQYFQQDQ-AAQLLAELKSAGVNLAYLGQRPDRQAELFGFTVVLTGKLEKLNRTQAKEKL 605

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            QLGA V+  +S+KTD+++ G   GSKL KAQQLG++I +E+  L L
Sbjct: 606 EQLGAKVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652


>gi|209559128|ref|YP_002285600.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes NZ131]
 gi|254781429|sp|B5XKP3|DNLJ_STRPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|209540329|gb|ACI60905.1| DNA ligase [Streptococcus pyogenes NZ131]
          Length = 652

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 222/699 (31%), Positives = 367/699 (52%), Gaps = 62/699 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL+ L     Y    YY    P + DS+YD L R    +  ++P+    + P     ++
Sbjct: 6   KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG  
Sbjct: 60  GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  F
Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
            A+N+     G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q E+
Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTAVVAKRELATFLYQ--EASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+   +    P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFI 554
              A  +   ADI+ L +         EN +   G  + S   L  +I   ++ S E+ +
Sbjct: 450 --LAGFVHDVADIYQLTK---------ENFMQLDGIKEKSADKLLAAIEASKSNSAEKLL 498

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRH+G++++R + + Y        +I+ ++    ++   + R+  +G  IAQ++ +
Sbjct: 499 FGLGIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQ 548

Query: 615 FYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +++       V+ L    V+      + N  + +    +V TG L ++ R++A++ +  L
Sbjct: 549 YFEQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEAL 608

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           GA V+  +S+KTD++I G + GSKLEKA+ LG++I +E+
Sbjct: 609 GAKVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647


>gi|71903217|ref|YP_280020.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS6180]
 gi|123761437|sp|Q48UE1|DNLJ_STRPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71802312|gb|AAX71665.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS6180]
          Length = 652

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 220/696 (31%), Positives = 366/696 (52%), Gaps = 56/696 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL+ L     Y    YY    P + DS+YD L R    +  ++P+    + P     ++
Sbjct: 6   KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG  
Sbjct: 60  GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  F
Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
            A+N+     G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q E+
Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLYQ--EASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I ++   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWNFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+   +    P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKED------FMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + + Y        +I+ ++    ++   + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L    V+      + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647


>gi|34540958|ref|NP_905437.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83]
 gi|81417286|sp|Q7MV47|DNLJ_PORGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|34397273|gb|AAQ66336.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83]
          Length = 669

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 227/714 (31%), Positives = 369/714 (51%), Gaps = 56/714 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A+ IE+ R+ L         H+  YY  S P I D EYDA+ ++ + +   +P+    + 
Sbjct: 8   AVRIEELRRILRE-------HEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEW---DS 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P +++G +       V H  P LSL   +N +++  F  R+    Q           
Sbjct: 58  PDSPTHRVGSDKTEGFASVRHDRPMLSLSNTYNYDEIGDFYRRVSEGLQGA---PFEIVA 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           E K DG  I++ YE G  V A  RGDG  G+DV+A +R I ++P R+   + P ++EVRG
Sbjct: 115 ELKFDGLSISLIYEDGMLVRAVTRGDGIMGDDVTANVRTIRSVPLRLRGDDYPRMLEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E+ +   +F  +N +  A G   +ANPRNAASG +++L+P  +  R L+ + + L  + E
Sbjct: 175 EILLPFKEFDRINAQREAEGEPLFANPRNAASGTIKQLDPHIVAGRNLDAYFYYL-YSDE 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A+  Y+ L + R  GF V++ V    +   + ++ +   + R TLP   DG+V KV+ 
Sbjct: 234 PLAENHYDRLMQARQWGFKVSDAVTLCCSKEEVYAFIDRFDTERLTLPVATDGIVLKVNA 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q  LG  A+SPRW I++K+  ++  TRL  +  Q+GRTG +TPVA L+PV I G ++
Sbjct: 294 PAQQDLLGFTAKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVANLDPVLISGTVV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN D+I             +D+  GD V V++ GE+IPK+V +  + R  D +P 
Sbjct: 354 RRASLHNADFI-----------AEKDLHEGDFVYVEKGGEIIPKIVGVDTDARSIDGRPI 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            F   CP C + +VR+         AA+ C     C  QQ  RL+H+  R   +I  +G 
Sbjct: 403 VFTVLCPDCATPLVREQGE------AAYYCPNAEGCPQQQKGRLEHYCGRKTADI-NIGP 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++  +        IR  AD + L   Q      +  + GF   +   L DSI   +  
Sbjct: 456 ETIELLYSRN----MIRNVADFYALTEEQ------LLTLPGFKKRAAAKLLDSIEASKAR 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             +  +F LGIR VG  +A+ LA  Y S       I+ + A  +++   L+++  +G+ I
Sbjct: 506 PYQAILFGLGIRFVGETVAKKLAAVYPS-------IDALAAATSEE---LVQIDEIGERI 555

Query: 609 AQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A A++ F+   +N   +E L L  VS         VS+ +  K +V +GT +K  R + +
Sbjct: 556 AAAVLHFFSLRQNRELIERLRLAGVSLEAETVSVAVSNRLAGKTVVISGTFEKRSRDEYK 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
             V   G  ++  +S KT  I+ G + G SK EKA++LGV++M+EE+FL L+++
Sbjct: 616 AMVEDNGGRMAGSVSSKTSFILAGSDMGPSKREKAEKLGVRLMSEEEFLRLIEE 669


>gi|315653834|ref|ZP_07906750.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195]
 gi|315488530|gb|EFU78176.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195]
          Length = 672

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 229/717 (31%), Positives = 380/717 (52%), Gaps = 69/717 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L    DP
Sbjct: 4   LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG     L KV H  P LS+  +++ ++L +F  RI    QK   + + + +E
Sbjct: 61  DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVRGE 
Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G   +ANPRNAA+G LR+L+  ++T  R L+ F++      E 
Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +++
Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+ 
Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   +V        K   A RC   + C AQ  E + HF SR A NI GLG +
Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454

Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
              QL       D        AD++ L      S  ++  +  F D S+ NL ++I   +
Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+E  +F LGI HVGA+ AR +A+ +        ++N I   +  D   L+++  +G 
Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAQKF-------HDLNTIRECSIAD---LMQIDTIGQ 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658
            IA+++V++++      +V+AL+ ++  +      +G  +     +   + K +V TG L
Sbjct: 552 AIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
               R    + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +
Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVI 664


>gi|15674800|ref|NP_268974.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes M1 GAS]
 gi|71910386|ref|YP_281936.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS5005]
 gi|81533831|sp|Q9A0J5|DNLJ_STRP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13621930|gb|AAK33695.1| putative DNA ligase [Streptococcus pyogenes M1 GAS]
 gi|71853168|gb|AAZ51191.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS5005]
          Length = 652

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 220/696 (31%), Positives = 366/696 (52%), Gaps = 56/696 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL+ L     Y    YY    P + DS+YD L R    +  ++P+    + P     ++
Sbjct: 6   KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG  
Sbjct: 60  GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  F
Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPYQLSE--PLTITVRGEAYMSRQSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
            A+N+     G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q E+
Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLYQ--EASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+   +    P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKED------FMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + + Y        +I+ ++    ++   + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L    V+      + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647


>gi|329920507|ref|ZP_08277239.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G]
 gi|328936183|gb|EGG32636.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G]
          Length = 672

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 229/717 (31%), Positives = 380/717 (52%), Gaps = 69/717 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L    DP
Sbjct: 4   LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG     L KV H  P LS+  +++ ++L +F  RI    QK   + + + +E
Sbjct: 61  DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVRGE 
Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN +    G   +ANPRNAA+G LR+L+  ++T  R L+ F++      E 
Sbjct: 175 YMDKATFAKLNFKRDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +++
Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+ 
Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   +V        K   A RC   + C AQ  E + HF SR A NI GLG +
Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454

Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
              QL       D        AD++ L      S  ++  +  F D S+ NL ++I   +
Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+E  +F LGI HVGA+ AR +AK +        ++N I   +  D   L+++  +G 
Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAKKF-------HDLNTIRECSIAD---LMQIDTIGQ 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658
            IA+++V++++      +V+AL+ ++  +      +G  +     +   + K +V TG L
Sbjct: 552 TIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
               R    + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +
Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVV 664


>gi|320334549|ref|YP_004171260.1| DNA ligase [Deinococcus maricopensis DSM 21211]
 gi|319755838|gb|ADV67595.1| DNA ligase [Deinococcus maricopensis DSM 21211]
          Length = 671

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 223/702 (31%), Positives = 355/702 (50%), Gaps = 55/702 (7%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
           Q I +H+  YY+   P I D+EYDAL R   A   A P+      P  P  K+GG  + +
Sbjct: 11  QTIQHHNRLYYEQDTPEISDAEYDALMRELRAAEAAHPEWI---TPESPTQKVGGAPSSA 67

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITIRYE 144
              VTH  P  SL+ ++N E+L  +  ++ R      D + + +T E KIDG  + + Y 
Sbjct: 68  FQPVTHPTPMTSLDNVFNDEELTDWGAKLARALGAAPDTADYAYTCELKIDGLSVNLYYV 127

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            G   +AA RG+G  GE V+  +  IP IPR L   +   +EVRGEVY+S+ +F + N  
Sbjct: 128 DGVLQWAATRGNGVVGEIVTEQVLTIPEIPRTLP-GLKGELEVRGEVYLSREEFASYNAL 186

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
              +G     NPRN A+G LR+ +P +   R L   ++ LGK   + A+ Q+++L  +  
Sbjct: 187 AEELGLPLLKNPRNGAAGALRQKDPKETAKRRLRAILYALGKRDGVPARTQWDVLTWLAE 246

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
            GFP +    +        +Y+  M + R+ LP+D DG V K+D+   Q+  G  +R+PR
Sbjct: 247 QGFPTSAYSERVQGLPAAAAYHARMVADRANLPFDADGTVIKLDDLRAQEDAGFTSRAPR 306

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W I++KF  ++  T+LL I I +GRTG L P+A LEP  I G+ ++ ATLHNED+I+ L 
Sbjct: 307 WAIAYKFPVEEVQTKLLSITINVGRTGKLAPLAHLEPRLIEGSTVSKATLHNEDFIRNL- 365

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                     D+R+GD VLV++AG VIP++V  +   R   ++PF FP+ CP C    VR
Sbjct: 366 ----------DLRIGDTVLVRKAGGVIPEIVRNLTELRADHSEPFEFPTHCPECGHAAVR 415

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
                  +  A   C    AC AQ  ERL++FVSR A +I GLG++ ++   +       
Sbjct: 416 ------AEGDANTYCVNP-ACPAQAYERLRYFVSRGAMDIRGLGEKLIEQLLQ----GGL 464

Query: 504 IRIPADIFTLQRRQ-----QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
           +R  AD ++L   Q     ++ T K +N+L             + + +   L R + +LG
Sbjct: 465 VRDAADFYSLTEAQLAGLERSGTKKAQNVL-----------RELEESKKQPLWRLVNALG 513

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  VG   A+ L + + S           IA  +           VG+ +AQ++     +
Sbjct: 514 MPGVGERNAQVLTRAFPSLDALLAATPEQIASIHG----------VGETLAQSVHAALHD 563

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                 +  L      ++   +     ++     V TGTL +  R   + ++  LGA +S
Sbjct: 564 ATMTDLLGRLRAADLNTVEEVDAPQGEQLAGTTFVITGTLSR-PRDVFKAHLESLGARIS 622

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +++KT  ++ G++ GSKL+KA++ GV I++E     LL +
Sbjct: 623 GSVTKKTTYLLAGEDAGSKLDKARENGVTILDEAALGALLTE 664


>gi|309803834|ref|ZP_07697919.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d]
 gi|312870780|ref|ZP_07730886.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a]
 gi|312873110|ref|ZP_07733169.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1]
 gi|308164068|gb|EFO66330.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d]
 gi|311091343|gb|EFQ49728.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1]
 gi|311093656|gb|EFQ51994.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a]
          Length = 672

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 229/717 (31%), Positives = 380/717 (52%), Gaps = 69/717 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L    DP
Sbjct: 4   LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG     L KV H  P LS+  +++ ++L +F  RI    QK   + + + +E
Sbjct: 61  DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVRGE 
Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G   +ANPRNAA+G LR+L+  ++T  R L+ F++      E 
Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +++
Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+ 
Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   +V        K   A RC   + C AQ  E + HF SR A NI GLG +
Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454

Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
              QL       D        AD++ L      S  ++  +  F D S+ NL ++I   +
Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+E  +F LGI HVGA+ AR +A+ +        ++N I   +  D   L+++  +G 
Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAQKF-------HDLNTIRECSIAD---LMQIDTIGQ 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658
            IA+++V++++      +V+AL+ ++  +      +G  +     +   + K +V TG L
Sbjct: 552 AIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKEKNVVLTGKL 607

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
               R    + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +
Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVV 664


>gi|297156986|gb|ADI06698.1| NAD-dependent DNA ligase LigA [Streptomyces bingchenggensis BCW-1]
          Length = 728

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 235/748 (31%), Positives = 368/748 (49%), Gaps = 76/748 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR + + L +++  H   YY    PI+ D+E+D   R    +     +      P+ P 
Sbjct: 12  EARDKHAILAEQVEEHRFRYYVKDAPIVSDAEFD---RLLRELEALEEEYTELRTPDSPT 68

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G       +V H    LSL+  ++ E+L  +  RI R   +  D+   F  E K+D
Sbjct: 69  QKVAGAYETEFTEVEHRERMLSLDNAFDGEELAAWAERIVR---ELGDSGYHFLCELKVD 125

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE+G+   AA RGDG +GED++  +R I  IP R+    IPE++EVRGEVY  
Sbjct: 126 GLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTISVIPDRLKGDRIPELVEVRGEVYFP 185

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
              F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G         
Sbjct: 186 GARFEELNARLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLRMVVHGIGAREGFDIDR 245

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           Q +  + +   G P     +  ++   +   ++YY + K  R +L ++IDG+V K+DE  
Sbjct: 246 QSQAYELLHEWGLPTAAHFKVVDSLDAVSEYIAYYGDPKR-RHSLEHEIDGVVVKLDEIP 304

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +R+PRW I+ KF  ++ +T+L+DI + +GRTG +TP A +EPV + G+ +  
Sbjct: 305 LQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPFAVVEPVTVAGSEVEF 364

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP++V  +V+ R    + F  
Sbjct: 365 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSEREFVM 413

Query: 431 PSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           P+ CP C +     L P K G +    RC     C AQ  ER+ +   R   +IE  G  
Sbjct: 414 PAECPECGT----PLQPMKEGDV--DLRCPNARYCRAQIRERVYYLAGRKCLDIENFGYV 467

Query: 490 QLDFFFKSEDPA-FSIRIPADIFTL--------------------QRRQQTSTTKI---- 524
                 +  DPA   ++   D+F L                    +R  +T   K+    
Sbjct: 468 AAGALTQPLDPAEPPLKDEGDLFDLKVEQLLPITSYVLDPDSGLPKRDPKTGEEKVVTFF 527

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
            N  G    +   + D+I   +   L R I  L IRHVG   A +LA+ + S    A+  
Sbjct: 528 ANQKGEPKKNTLAMLDNIEAAKQRPLARIITGLSIRHVGPVAAAALAREFRSLDRIAEAS 587

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE------ALLKEVSPSIGR 638
              +A              VG  IA ++ +++    +   VE       LL+E +P    
Sbjct: 588 EEELAAVEG----------VGPTIAASVKQWFAEDWHREIVEKWRRAGVLLEEEAP---- 633

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E      +E   +V TGTLQ   R  A+E +   GA V+  +S+KTD ++VGDNPGSK 
Sbjct: 634 -EDEGPRPLEGLTVVVTGTLQTHTRDGAKEALQNRGAKVAGSVSKKTDFVVVGDNPGSKY 692

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +KA QL V +++E+ F  LL+Q     R
Sbjct: 693 DKAMQLKVPVLDEDGFTVLLEQGPEAAR 720


>gi|27904570|ref|NP_777696.1| DNA ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|32129495|sp|Q89B02|DNLJ_BUCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|27903967|gb|AAO26801.1| DNA ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 672

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 232/711 (32%), Positives = 375/711 (52%), Gaps = 63/711 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L+ EI YH   Y+  + P I D +YD L      +        R +D   P   +G E N
Sbjct: 11  LQDEIRYHAYLYHTLNSPKISDEKYDFLVIELQRLEKKCKYSVRFKD--SPTQSVGSE-N 67

Query: 84  LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           L  FK  +H  P LSL  ++   D  KF  +I           IFF  E K DG  I + 
Sbjct: 68  LPEFKKFSHITPMLSLNNVFIKNDFLKFYKKIV---NNITVEKIFFCSELKFDGVAINLI 124

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR-VLSLNIPEIIEVRGEVYISKNDFLAL 201
           Y  G    A  RG+G+ GEDV++ +  I ++P+ ++ ++IPE +EVRGE+++ K+DF  L
Sbjct: 125 YINGLLFRAVTRGNGYEGEDVTSNVNMISSVPKKLIGIDIPETLEVRGEIFMLKSDFKKL 184

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYLNFFVHGLGKTS-EIFAKGQYEML 258
           N  +    +K ++N RNAASG LR  N   T++ R L F+ +G G  S E F    +  L
Sbjct: 185 NVRLTKFKKKLFSNSRNAASGSLRHKNAKVTEL-RSLTFYCYGCGYCSYENFTDSHFLRL 243

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +K++  GFP+++     +++  I+ +YN +++ R  L ++IDG+V KVD   LQK L   
Sbjct: 244 KKLKSWGFPISDYNFLHSSYDEILRFYNFIQNERYFLNFNIDGIVIKVDSICLQKSLSTT 303

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           +++PRW +++KF++K   T +++I  Q+GRTG++TPVA++ P+ I G LI   +LHN + 
Sbjct: 304 SKAPRWAVAYKFSDKIKITTIMNILYQVGRTGVITPVAQVTPIYISGVLIKKVSLHNFNE 363

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+ L           ++ +GD V +KR+G+VIP ++++    +    +  S P FCP C 
Sbjct: 364 IRRL-----------NLNIGDSVFIKRSGDVIPHIIEVASKCKLQRNEDISIPKFCPECG 412

Query: 439 SRVVRD--LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           S++  D   N K        RC  GL C +Q  + L +F S+   NI GLG + +D   K
Sbjct: 413 SKLKVDSFSNIKI-------RCMAGLKCLSQFKKLLHYFCSKKGLNILGLGPKIID---K 462

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
             D  + +   +DIF L     +  TK+ENI   G +   N+  SIN  +N+S  +F+ S
Sbjct: 463 LVDLGY-VSDLSDIFDL---NVSLLTKVENI---GIIKSQNIIRSINNSKNVSFSKFLCS 515

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  VG+ +ARS++ Y+ +   F           N      + +  +G  IA  +  F 
Sbjct: 516 LGIFEVGSIVARSISNYFFTLDKFM----------NSSKEEFLLINGIGVNIADNLYNFI 565

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEYV 670
            +  N   +  L K+++ S      ++++ I+N      KK+VF+G+     R K  E  
Sbjct: 566 NDEFNKNIIFKLSKKLNIS-----SDINAIIDNNNTLFRKKIVFSGSFSNFSRSKIIELS 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            +LG +V + +S+  D II+G  PG KL KA++  +  + E++FL ++  Y
Sbjct: 621 KKLGIIVVSSVSKSVDYIIIGKKPGRKLIKAKKFSIPGIYEKEFLNIINVY 671


>gi|21910027|ref|NP_664295.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS315]
 gi|28896275|ref|NP_802625.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes SSI-1]
 gi|81759290|sp|Q8K831|DNLJ_STRP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21904217|gb|AAM79098.1| putative DNA ligase [Streptococcus pyogenes MGAS315]
 gi|28811526|dbj|BAC64458.1| putative DNA ligase [Streptococcus pyogenes SSI-1]
          Length = 652

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 220/696 (31%), Positives = 365/696 (52%), Gaps = 56/696 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL+ L     Y    YY    P + DS+YD L R    +  ++P+    + P     ++
Sbjct: 6   KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG  
Sbjct: 60  GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  F
Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
            A+N+     G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q E+
Sbjct: 173 KAINEGRQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLYQ--EVSPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+   +    P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKED------FMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + + Y        +I+ ++    ++   + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L    V+      + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647


>gi|226356158|ref|YP_002785898.1| DNA ligase (NAD(+)) [Deinococcus deserti VCD115]
 gi|254778151|sp|C1CVC7|DNLJ2_DEIDV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|226318148|gb|ACO46144.1| putative DNA ligase (NAD(+)) [Deinococcus deserti VCD115]
          Length = 686

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 225/708 (31%), Positives = 361/708 (50%), Gaps = 52/708 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L  E++ H+  YY+   P I D EYDAL R    +    P+    ED + P+  IGG  
Sbjct: 15  ALRAEVARHNRAYYEQDAPEISDDEYDALARALRDMEARHPEWV--ED-DSPVQTIGGAP 71

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITI 141
           + +   V H  P  SL+ +++ ++LR++  ++ R      ++  F FT E KIDG  + +
Sbjct: 72  SAAFEPVAHLTPMTSLDNVFDADELREWQEKLARSLNLPPESDDFTFTGEIKIDGLSVNL 131

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            Y  G   +AA RG+G  GE V+A +  IP IP+ L   +   +EVRGEVY+S+ DF A 
Sbjct: 132 YYLDGTLQWAATRGNGRVGEMVTAQVLTIPGIPQHLD-GLKGQLEVRGEVYLSRADFAAF 190

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           N +   +G     NPRN A+G LR+ +P    TR L    + LG+   + A+ Q E+LQ 
Sbjct: 191 NAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRNLKAIFYSLGRRDGVEARTQSEVLQW 250

Query: 261 MRCLGFPVNNGVRQANTFHGIVS---YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +   GFPV++    + TF G V+   Y+  M   RS   +D DG V K+D  +LQ++ G 
Sbjct: 251 LAGRGFPVSH---YSETFRGYVAAADYHRRMTEARSNFEFDADGTVIKLDPLALQEEAGF 307

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW I+ KF  +Q  T L  I + +GRTG L P+A L P  I G+ ++ ATLHNED
Sbjct: 308 TSRAPRWAIAFKFPVEQVETVLESITVNVGRTGKLAPLAHLAPRLIEGSTVSKATLHNED 367

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI+ +           D+RVGD V+V+++G VIP+++ ++  +R     PF FP++CP C
Sbjct: 368 YIRQM-----------DLRVGDTVVVRKSGGVIPQIMRVVTEKRPEKTTPFVFPTYCPEC 416

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
              V R           A+      AC AQ+ ER+++FVSR A ++ G+G++ +    ++
Sbjct: 417 GHEVTRAEGD-------ANTYCPNPACPAQRFERIRYFVSRGAMDVRGIGEKLVIQVIET 469

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +R  AD++ L   Q      +  +   G+    N+   +   +   L R I +L
Sbjct: 470 ----GLVRDAADLYLLTAEQ------LAGLERGGEKKAQNVLAQLEASKTRPLWRLINAL 519

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+ HVG   A++LA+ + S     +     I            VP +G + A ++     
Sbjct: 520 GMTHVGERNAQALARAFGSLDALLRATPEQIEA----------VPGMGKVTAVSVSAALA 569

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           +P     +E  L+    S    +     ++     V TG+L +  R + +  +   GA V
Sbjct: 570 DPTMRNLIER-LRAAGMSPEETQTVRGEQLAGLNFVITGSLSQ-PRDELKALLEAAGARV 627

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           +  ++RKT  +I G + GSKL++A++L V +++E     LL Q    L
Sbjct: 628 TGSVTRKTSYLIAGQDAGSKLDRARELAVPVLDEAALGTLLHQRGVQL 675


>gi|319951546|ref|ZP_08025350.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4]
 gi|319434794|gb|EFV90110.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4]
          Length = 726

 Score =  344 bits (882), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 227/731 (31%), Positives = 366/731 (50%), Gaps = 48/731 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E + L + +  H   YY    PI+ D+E+D L     A+   +P L R+ D   P   
Sbjct: 21  RQEWTELAETVRDHQFRYYVKDAPIVSDAEFDRLFGELQALEEKYPAL-RTAD--SPTQL 77

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG  +     V H     SL+ +++ E+LR ++          +D  + F  E KIDG 
Sbjct: 78  VGGGFSTDFAPVEHLERMTSLDNVFSEEELRDWVASAVEQAGVPEDR-LPFLCEVKIDGV 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            + + Y  GK V AA RGDG +GEDV+   R I  IP  L+      +P ++EVRGEV+ 
Sbjct: 137 ALDLVYRDGKLVSAATRGDGRTGEDVTLNARTIEDIPVTLTPTPDRPVPSLLEVRGEVFF 196

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF  LN  ++A G+ P+ANPRN+A+G LR+ NP     R L  + HGLG       +
Sbjct: 197 RLEDFAELNARLVAEGKAPFANPRNSAAGSLRQKNPAITAQRRLGMYCHGLGAVEGATFE 256

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +++   +   G PV+     A     +V         RS   ++IDGLV K+D+ ++Q
Sbjct: 257 SLHDVYLALADWGLPVSPHTAPATGVEEVVERMRYWGEHRSDPEHEIDGLVVKIDDRAVQ 316

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG+ +R+PRW I++K+  ++  T LLDI + +GRTG +TP A +EPV + G+ ++ AT
Sbjct: 317 RRLGQTSRAPRWAIAYKYPPEEVMTELLDIRVSVGRTGRVTPFAYMEPVLVAGSTVSLAT 376

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+          +V+R G  + +GD V++++AG+VIP+V+  +V  R    + F FP 
Sbjct: 377 LHNQT---------EVIRKG--VLIGDTVVIRKAGDVIPEVLGPVVERRDGTEREFVFPE 425

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +      + G   A  RC    +C AQ  ERL +  SR+A +IE LG +   
Sbjct: 426 RCPECDTVLA---PAREGD--ADWRCPNQRSCPAQLRERLFYLASRNALDIEALGYEGAS 480

Query: 493 FFFKS-----EDPAFSIRIPADIFTLQ---RRQQTSTTKIENILGFGDVSVTN----LYD 540
               S     E   F +   AD+       R ++ +  +IE       V +T     L  
Sbjct: 481 DLLASGVLENEAGLFDL-TEADLLRTHLYTRIEKATRKQIEEGAEPERVVLTENGRKLLA 539

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++   ++  L R + +L IRHVG   AR+LA  + + +      +  +A  +        
Sbjct: 540 NLATAKDRPLWRVLVALSIRHVGPTAARALATRFGTMEAIRAASDQELAETDG------- 592

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
              VG  IA ++VE++    +   V+             ++++   +E   +V TG+L+ 
Sbjct: 593 ---VGQTIAASVVEWFGVDWHREIVDRWAAAGVSMADERDESIPRTLEGLTIVATGSLEG 649

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R   +E +   G   S  +S+KTD ++VGDNPGSK  KA++LG+ I++E  F+ L++ 
Sbjct: 650 FTRDGIKEAIIARGGKASGSVSKKTDYVVVGDNPGSKAAKAEELGLTILDEAGFVELMEN 709

Query: 721 YNTTLRIHDDD 731
                   D D
Sbjct: 710 GPAPAGTADPD 720


>gi|225377122|ref|ZP_03754343.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM
           16841]
 gi|225211027|gb|EEG93381.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM
           16841]
          Length = 668

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 222/707 (31%), Positives = 375/707 (53%), Gaps = 51/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + ++ L++ + YH D YY    P I D EYD + +    +    P+L     P+ P  
Sbjct: 6   AEERIAELKKTLEYHIDRYYNQDSPEISDYEYDMMMQELKNLEKEHPELVT---PDSPTQ 62

Query: 77  KIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           ++GG         V H++P LSL+ +++ E++  F+  +    QK+ D+   F +E KID
Sbjct: 63  RVGGTAKREAGVLVRHNVPMLSLQDVFSKEEVFNFVEEM----QKQLDHP-EFVVEYKID 117

Query: 136 GTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           G  +++RYE G+ + A  RGDG + GEDV+A  + I  + + L  + PE +E+RGEVY+ 
Sbjct: 118 GLSMSLRYENGELILAETRGDGINFGEDVTANAKVIKDVKQKLK-DKPEYLEIRGEVYMK 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252
              F  +N+    +G+K +ANPRN A+G LR+L+ + +T  R L+ F+  + +   +   
Sbjct: 177 NAAFEKVNETQELLGKKVFANPRNCAAGTLRQLD-SKVTKERDLSMFIFNIQQVRGMEFA 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E  + ++  G  V +  +   T   +      +   R  L YDIDG V K++ FS +
Sbjct: 236 THTEGYEFLKKQGIHVIDDYKVCTTAEEVWDAITAIGENRGNLAYDIDGAVVKINRFSDR 295

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLGE ++ PRW I++K+  ++  +RLL+I++ +GRTG +TP A  EPV + G  ++ AT
Sbjct: 296 EQLGETSKVPRWAIAYKYPPEEKESRLLNIELSVGRTGRITPTAVFEPVRLCGTSVSRAT 355

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D+I  L           DI +GD ++V ++GE+IPK+ ++   +R  D + F  P 
Sbjct: 356 LHNQDFIDDL-----------DIGIGDTIVVYKSGEIIPKIKEVKKEKRPSDWKRFVIPD 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C ++  R+      K  A  RCT    C AQ    + +FV RDA +I+G G   ++
Sbjct: 405 VCPVCGAKTERE------KDTADIRCTSP-NCPAQLERHIINFVGRDAMDIKGFGTVYIE 457

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +       I   AD+F L+  +       + I+G  + +   L D+I K +     +
Sbjct: 458 ELVR----LGYINNVADVFVLKTHRDELID--QGIIG-KEKNTDKLLDAIEKSKENDAYK 510

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +  LGI +VG   A+++ KY+    +  +     +   ND          +G++ A  I
Sbjct: 511 LLTGLGIPNVGKAAAKAIMKYFKDMDHLKEASVEQLTEVND----------IGEVSALCI 560

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F+ + +NI  ++  LKE   ++   E + V S +  K +V TGTL  + R +A E + 
Sbjct: 561 RNFFTDEKNIEILDR-LKEYGVNMQAEETETVESVLTGKTVVVTGTLPTLGRKEASELIE 619

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + G   S  +S+KTD ++ G+N GSKL KAQ+LG+ +++EEQ   +L
Sbjct: 620 KYGGKASGSVSKKTDYVLAGENAGSKLTKAQELGIPVISEEQLKEML 666


>gi|257452731|ref|ZP_05618030.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
 gi|317059272|ref|ZP_07923757.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
 gi|313684948|gb|EFS21783.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
          Length = 676

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 230/705 (32%), Positives = 367/705 (52%), Gaps = 60/705 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM- 82
           L++++  + D YY  ++ +I D EYD L +  + +        + E+ +    K+G  + 
Sbjct: 14  LQKKLQRYSDAYYSQNESLISDYEYDMLLKELEQLEKEL----QIENKSSITQKVGSSLK 69

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           N    K TH  P LSL   + I ++  F+ R  +     D+  +   +E K+DG  I+I 
Sbjct: 70  NTKFQKTTHKTPMLSLSNTYEIGEIEDFLLRAKKNLNMTDNLEV--EMEIKLDGLSISII 127

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YEKGK V A  RGDG  GEDV+  +  I +IP  LS      IE+RGE+ +  ++F  LN
Sbjct: 128 YEKGKLVRAVTRGDGIVGEDVTENVLQIESIPHELSEAFD--IEIRGEIVLPFSEFENLN 185

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
              I  G + +ANPRNAASG LR+L+P  +  R+L  + + +    +     Q E +  +
Sbjct: 186 KIRIEKGEEVFANPRNAASGTLRQLDPKIVKERHLAAYFYFIVNAEQYGIHSQKESILFL 245

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             L  P             +    N   S R  LPY+ DGLV K+++ SL ++LG   +S
Sbjct: 246 EKLSLPTTKICEIFQDSSKLEDRINYWSSEREKLPYETDGLVLKINDISLWEKLGSTGKS 305

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW +++KF  KQ +T+LLDI  Q+GRTG +TPVA LE V + G+ +  A+LHN D    
Sbjct: 306 PRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVKRASLHNYD---- 361

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                +++R  +DIR+GD V +++A E+IP+VV  +  +R    +    P  CPIC+S +
Sbjct: 362 -----EIVR--KDIRIGDTVFIEKAAEIIPQVVKAVKEDRTGKEKKIEAPEHCPICESIL 414

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+      K +  H C G +         +++FVSRD  NI GLG + L+         
Sbjct: 415 EREEGLVDLKCINKH-CPGKIQG------EMEYFVSRDGMNISGLGGRILEKLL----SL 463

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +   +DI++L+ +++    ++E +   G  S+ NL  SI + +  S ++ +++LGI  
Sbjct: 464 HYLENVSDIYSLKEKRE----ELEQLDKMGKKSIENLLSSIEESKKTSYDKVLYALGIPF 519

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   A+ LAK          E  NI+         L ++  VG+ +A++IV+F+QN   
Sbjct: 520 VGKVAAKLLAK----------ESKNILKLQTMTEEELQQIEGVGEKMARSIVDFFQNETK 569

Query: 622 ICAVEALLKEVSPSIGRH-------EKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQL 673
              ++ L+      IG         E +  ++I + K  + TGTL K  R + QE + + 
Sbjct: 570 KQLIQNLI-----DIGLCFTLKDGVEASTEAKIWQGKNFLVTGTLSKYTRAELQEDIEKS 624

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFL 717
           G    + +++K D +IVG+  GSKLEKA+ LG V I+ EE+FL L
Sbjct: 625 GGTNLSSVTKKLDYLIVGEKAGSKLEKAKALGSVTILTEEEFLAL 669


>gi|167756540|ref|ZP_02428667.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402]
 gi|167702715|gb|EDS17294.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402]
          Length = 664

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 231/705 (32%), Positives = 369/705 (52%), Gaps = 59/705 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L+  I YH+D YY    P I D EYD + +    +    P+   S+ P     K+GG   
Sbjct: 10  LKATILYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITSDSPT---QKVGGSAK 66

Query: 84  LSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                 V H++P LSL+ +++ ED+  F+  +    Q  D     F +E KIDG  + +R
Sbjct: 67  REAGVLVRHNVPMLSLQDVFSKEDVDAFVADMQE--QLVDPT---FVVEYKIDGLSMALR 121

Query: 143 YEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
           Y  GK   A  RGDG   GEDV+   + I  +   L   I E +EVRGEVY++   F  +
Sbjct: 122 YVNGKLDVAVTRGDGVLQGEDVTVNAKVIKDVKNTLKEPI-EYLEVRGEVYMTNEAFDKV 180

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL--GKTSEIFAKGQ-YE 256
           N+     G+K +ANPRN A+G LR+L+ + IT  R L+ FV  +   K  E  +  + YE
Sbjct: 181 NEIQEIKGKKLFANPRNCAAGTLRQLDSS-ITKERNLSMFVFNIQDAKGREFISHSEGYE 239

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L++    G  +    +   T   +      +   R  L YDIDG V K+D F+ +++LG
Sbjct: 240 YLKRQ---GIKIIEDYKICKTAKEVWEAIEAIGENRDKLGYDIDGAVVKIDSFADRQKLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PRW +++K+  ++  T+LL I++ +GRTG +TP A  EP+ + G  ++ ATLHN+
Sbjct: 297 ATAKVPRWAVAYKYPPEEKETKLLAIELSVGRTGRITPTAIFEPIRLCGTTVSRATLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I  L           D+R+GD ++V ++GE+IPKV  ++  +R  D+ P+   + CP+
Sbjct: 357 DFIDDL-----------DVRIGDTIVVYKSGEIIPKVKGVVKEKRPADSAPYVIGNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR+ +       A  +CT   +C ++ +  + +FV RDA +I+G G   ++    
Sbjct: 406 CGAPAVREGDN------ADIKCTNH-SCPSKLVRNIVNFVGRDAMDIKGFGFAYVETLV- 457

Query: 497 SEDPAFSIRIPADIFTL-QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             D  + ++  +DI+ L  +RQ+    KI  ++     S  NL ++I   +N    + + 
Sbjct: 458 --DHGY-LKDLSDIYGLIDKRQELLDKKIIGLVK----STDNLLNAIEGSKNNDAIKLLT 510

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGI +VG   A+SL K + S  N  +            +  LI V  +GDI A AI+ +
Sbjct: 511 SLGISNVGKSAAKSLMKKFKSIDNLMKA----------SYAQLIEVNDIGDISAMAIINY 560

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++NP N   V+  LKE   ++   E     E  + K  V TGTL  + R  A E + + G
Sbjct: 561 FKNPDNQAVVQR-LKEYGVNMNIIEAQDGDERFDGKTFVVTGTLPTLSRKAASELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             VS  +S+KTD ++ G+N GSKL KAQ LG+ +++EE  L +++
Sbjct: 620 GKVSGSVSKKTDYLLAGENAGSKLTKAQNLGINVISEETLLEMVK 664


>gi|297559142|ref|YP_003678116.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843590|gb|ADH65610.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 775

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 234/748 (31%), Positives = 380/748 (50%), Gaps = 84/748 (11%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++ R   + L QE+  H   YY    P+I D+EYD L R    I  ++P LA  + P   
Sbjct: 12  DEVRARHTELCQELDDHSYRYY-LGTPVISDAEYDTLMRELVGIEDSYPALATQDSPT-- 68

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTLE 131
             K+G  +++    V H +   SL   +++++L          W  +    +    +  E
Sbjct: 69  -QKVGAPISVDFAAVEHLVRMESLGNAFDVDELNA--------WADRASAEVPVNGYLCE 119

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVR 188
            KIDG  + + YEKG+ V AA RGDG  GED++  +R I  +P  L  ++   PE++EVR
Sbjct: 120 LKIDGLAVDLVYEKGRLVRAATRGDGRVGEDITLNVRTIGVVPERLDESVRPAPELLEVR 179

Query: 189 GEVYISKNDFLALNDEMIAVGR-KPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           GEV++   DF  LN+ + A G   P+ANPRNAA+G LR+ +P    TR L+  VHG+G  
Sbjct: 180 GEVFLPVEDFGKLNERITASGEHTPFANPRNAAAGSLRQKDPRVTATRPLSMIVHGVGAY 239

Query: 247 S-------EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           S       E+    Q +  + +   G P+++  R   T   +  Y     + R    Y+I
Sbjct: 240 SPAKDGGGEVAFTSQSQAYRLLGEWGLPLSDRYRVVTTMDEVREYVAHYAAHRHEPAYEI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KVD+F+LQ++LG  +R PRW I++K+  ++ +TRLLDI + +GRTG +TP   +E
Sbjct: 300 DGIVIKVDDFALQRRLGSTSRVPRWAIAYKYPPEEVTTRLLDIKVGVGRTGRVTPYGVME 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+ +  ATLHN         + +V R G  + +GD V++++AG+VIP++V  +++
Sbjct: 360 PVVVAGSEVEFATLHN---------AREVERKG--VLIGDTVVLRKAGDVIPEIVAPVLD 408

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    + F+ P  CP C + + +    K G +    RC    +C  Q  ERL    SR 
Sbjct: 409 RRDGTERAFAMPESCPECGTTLGQQ---KEGDV--DLRCPNARSCPGQLRERLFFVASRK 463

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFS-IRIPADIFTL--------------------QRRQQ 518
           A +IE LG        +  +PA   +R   D+F L                    +   +
Sbjct: 464 ALDIEALGYVAATALTQPLEPARPPVRDEGDLFDLTVDMLLPIRTHVLDPDTTEPKTDPK 523

Query: 519 TSTTKI----ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
           T   K+     N  G    +V  L++ + + ++  L R + +L IRHVG   A  LA+++
Sbjct: 524 TGEPKVVSFFANKKGEPKKTVEKLFEQLEEAKSKPLWRVLVALSIRHVGPRAAEDLARHF 583

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
            S       ++ I A + ++   L  V  VG  IA +I E++    +    E + K    
Sbjct: 584 RS-------MDAIRAASEEE---LAAVDGVGPTIAASIREWFSVDWH---AEIVRKWADA 630

Query: 635 SIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
            +   +++  S    +E   +V TG+L+   R  A+E + + G   +A +S+KT  ++VG
Sbjct: 631 GVRMEDEDDGSRPRHLEGVTVVVTGSLEGFSRDGAKEAIAERGGRATASVSKKTGFVVVG 690

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           D+PGSK +KA +LGV +++EE F  LL+
Sbjct: 691 DSPGSKYDKAVKLGVPVLDEEGFRVLLE 718


>gi|256785054|ref|ZP_05523485.1| NAD-dependent DNA ligase LigA [Streptomyces lividans TK24]
 gi|289768947|ref|ZP_06528325.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
 gi|289699146|gb|EFD66575.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
          Length = 735

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 233/744 (31%), Positives = 372/744 (50%), Gaps = 80/744 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR+  + L ++I  H   YY    P++ D+E+D L R  + +    P+L     P  P 
Sbjct: 19  EARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEELEERHPEL---RTPESPT 75

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G        V H    LSL+  +N ++L  +  RI R   +  +    F  E K+D
Sbjct: 76  QKVAGAYATEFTAVQHPTRMLSLDNTFNDDELAAWFERIAR---ELGEQEYHFLCELKVD 132

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE+G+ V AA RGDG +GED++  +R I  IP R+    +P+++E+RGEVY  
Sbjct: 133 GLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVPDLVEIRGEVYFP 192

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
              F  LN  +   G KP+AN RNAA+G LR+ +P    +R L+  VHG+G T E ++ G
Sbjct: 193 MEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVHGIG-TLEGYS-G 250

Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307
              + Q    ++  G P +   R  +   G+   ++YY E    R ++ ++IDG+V KVD
Sbjct: 251 LTRLSQAYDLLKAWGLPTSPHNRVVDGLDGVREFIAYYGEN---RHSVAHEIDGVVVKVD 307

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E  LQ +LG  AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ 
Sbjct: 308 EIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSE 367

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN++ +K            + + +GD V++++AG+VIP+++  + + R    + 
Sbjct: 368 VEFATLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSERE 416

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP C + +      K G +    RC    AC AQ  ER+ +   R+  +IE  G
Sbjct: 417 FVMPAECPECGTPL---KAMKEGDI--DLRCPNARACPAQLRERVAYLAGRECLDIEHFG 471

Query: 488 KQQLDFFFKSEDPAFSIRI-PADIFTL--------------------QRRQQTSTTKIEN 526
                      +P+    +   D+F L                    +R  +T   KI  
Sbjct: 472 GVVAAALTGPLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKIAT 531

Query: 527 IL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
           +     G    +   L   I + +   L RFI  L IR+VG   A++LA+ + S     Q
Sbjct: 532 VFANKEGEPKKNTLALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQ 591

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY------QNPRNICAVEALLKEVSPSI 636
                +A  +           VG  IA A+ E++      +  R   A    L++ S   
Sbjct: 592 ATEEELASTDG----------VGGTIATAVKEWFAVDWHREIVRKWKAAGVPLEDRSTG- 640

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              E      +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGS
Sbjct: 641 ---EDEGPRPLEGLTVVVTGTLENFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGS 697

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQ 720
           K +KA QL V ++NE+ F  LL+Q
Sbjct: 698 KYDKAMQLKVPVLNEDGFAVLLEQ 721


>gi|325125239|gb|ADY84569.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 671

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 222/718 (30%), Positives = 386/718 (53%), Gaps = 55/718 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+ +L  ++ 
Sbjct: 2   AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYSELKSADS 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
                 ++GGE+N  L KV H +P LS+  +++ E+L +F  R+    QK   + + + +
Sbjct: 62  IT---QRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRV----QKAIGHPVAYNV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YE+G    A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE
Sbjct: 115 ELKIDGLSLSLEYEEGCLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSE 248
            Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++  +   + 
Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAG 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           I    Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+
Sbjct: 233 I--DSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDD 290

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ  LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G+ +
Sbjct: 291 LALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTV 350

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+
Sbjct: 351 ARASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPY 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V  L+ +      A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 400 EVPTKCPSCGEDLVH-LDEEV-----ALRCINP-SCPAQVEEGITHFASRQAMNIAGLGP 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I++ R  
Sbjct: 453 KIVKQLI-AKDLVHNV---ADLYYL------TADDLSQLDHFKEKSINNLLVAIDQSRKN 502

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI +VG + A+ +A+    ++N ++     IA  +   L+ I    +G  I
Sbjct: 503 SVELVLFGLGIDNVGGKAAQLIAR---KFKNMSK-----IASASVQELTAIDT--IGMTI 552

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++Q P     + A L+E   +   +G   +   +  + K +V TG L    R +
Sbjct: 553 AESLTAYFQ-PEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAE 611

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             + +  LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T
Sbjct: 612 FTKKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669


>gi|309804542|ref|ZP_07698607.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c]
 gi|309809394|ref|ZP_07703256.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D]
 gi|312873385|ref|ZP_07733436.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d]
 gi|308165934|gb|EFO68152.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c]
 gi|308170305|gb|EFO72336.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D]
 gi|311091069|gb|EFQ49462.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d]
          Length = 672

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 228/717 (31%), Positives = 379/717 (52%), Gaps = 69/717 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L    DP
Sbjct: 4   LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG     L KV H  P LS+  +++ ++L +F  RI    QK   + + + +E
Sbjct: 61  DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVRGE 
Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G   +ANPRNAA+G LR+L+  ++T  R L+ F++      E 
Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +++
Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+ 
Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   +V        K   A RC   + C AQ  E + HF SR A NI GLG +
Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454

Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
              QL       D        AD++ L      S  ++  +  F D S+ NL ++I   +
Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+E  +F LGI HVGA+ AR +A+ +        ++N I   +  D   L+++  +G 
Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAQKF-------HDLNTIRECSIAD---LMQIDTIGQ 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658
            IA+++V++++      +V+ L+ ++  +      +G  +     +   + K +V TG L
Sbjct: 552 TIAESMVKYFEQQ----SVKELMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
               R    + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +
Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVI 664


>gi|289704853|ref|ZP_06501270.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58]
 gi|289558349|gb|EFD51623.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58]
          Length = 797

 Score =  343 bits (880), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 245/795 (30%), Positives = 374/795 (47%), Gaps = 113/795 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E   L + +      YYQ   P I D+EYDAL RR + +    P+L  ++ P     +
Sbjct: 22  RAEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELVSNDSPT---QE 78

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDG 136
           +GGE++ +   V H     SLE +++IE+L  +  R  +   Q +   +  + +E KIDG
Sbjct: 79  VGGEVSEAFAPVRHGARMYSLEDVFSIEELEVWFRRAAQALTQVRPGVAPRWLVEVKIDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISK 195
             + +RY  G+ V AA RGDG +GEDV+A +R I  IP  LS    P   EVRGEV++S 
Sbjct: 139 LAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAEFEVRGEVFMSS 198

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G+ P+ANPRNAA+G LR+ +P     R L  FVHG+G       + Q
Sbjct: 199 AAFAELNARRAEEGQTPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGIGSVEAFGLESQ 258

Query: 255 YEMLQKMRCLGFPVNNGVRQAN-----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           +E+   +   G PV+   R+           +V+   E    R  L ++IDG+V K D F
Sbjct: 259 HEVYDALAGWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHEIDGIVLKADAF 318

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ LG  +R PRW +++K+  ++  T L DI + +GRTG +TP A +EPV + G+ ++
Sbjct: 319 ADQRYLGHTSRVPRWAVAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVMEPVTVAGSTVS 378

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP------ 423
            ATLHN+D +K            + + +GD V+V++AG+VIP+VV  ++  R        
Sbjct: 379 LATLHNQDVVK-----------AKGVLIGDTVVVRKAGDVIPEVVGPVLPLREKAIEAGR 427

Query: 424 DAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           + + F  P+ CP C +     L P K G +    RC    +C AQ   R++H  SR AF+
Sbjct: 428 ELREFVMPTHCPSCGT----PLAPAKEGDV--DLRCPNARSCPAQLAGRVEHLASRGAFD 481

Query: 483 IEGLGKQQLDFFFK--SEDPA-----------FSIRIPADIFTLQRRQQTSTTKIENILG 529
           +E LG++   +  +   EDPA             I   A IF L      ++   E I G
Sbjct: 482 VEALGEEAARWLVQGPGEDPAEHEGQVRPEGPGPITAEAQIFDL------ASGTPEEITG 535

Query: 530 -FGDVSVTNLYDSINKRR-----------------NISLERFIFSLG------------- 558
             G+  +T+L  S+ + R                   +L+ + F+ G             
Sbjct: 536 PRGEDGLTDLQRSLGEVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPTANTL 595

Query: 559 ----------------------IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
                                 IRHVG   ARSLA  + S            A    D  
Sbjct: 596 RLFDELEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMA------ALRAAAEAGDRD 649

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            L  +  VG IIA A++E++    +   V+             +++    +E   +V TG
Sbjct: 650 RLAEIDGVGPIIADALIEWFAEDWHREIVDRWAAAGVVMEDEQDESTPRTLEGLTVVVTG 709

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+   R  A+E +   G   S  +S+KTD ++ G+  GSKL+KAQ LGV +++E  F  
Sbjct: 710 SLEGFSRDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEAGFTA 769

Query: 717 LLQQYNTTLRIHDDD 731
           LL      +R  D D
Sbjct: 770 LLAGGADAVRPADTD 784


>gi|21223850|ref|NP_629629.1| NAD-dependent DNA ligase LigA [Streptomyces coelicolor A3(2)]
 gi|7674017|sp|Q9Z585|DNLJ1_STRCO RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|4467245|emb|CAB37570.1| putative DNA ligase [Streptomyces coelicolor A3(2)]
          Length = 735

 Score =  343 bits (880), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 233/744 (31%), Positives = 372/744 (50%), Gaps = 80/744 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR+  + L ++I  H   YY    P++ D+E+D L R  + +    P+L     P  P 
Sbjct: 19  EARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEELEERHPEL---RTPESPT 75

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G        V H    LSL+  +N ++L  +  RI R   +  +    F  E K+D
Sbjct: 76  QKVAGAYATEFTAVQHPTRMLSLDNTFNDDELAAWFERIAR---ELGEQEYHFLCELKVD 132

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE+G+ V AA RGDG +GED++  +R I  IP R+    +P+++E+RGEVY  
Sbjct: 133 GLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVPDLVEIRGEVYFP 192

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
              F  LN  +   G KP+AN RNAA+G LR+ +P    +R L+  VHG+G T E ++ G
Sbjct: 193 MEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVHGIG-TLEGYS-G 250

Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307
              + Q    ++  G P +   R  +   G+   ++YY E    R ++ ++IDG+V KVD
Sbjct: 251 LTRLSQAYDLLKAWGLPTSPHNRVVDGLDGVREFIAYYGEN---RHSVAHEIDGVVVKVD 307

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E  LQ +LG  AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ 
Sbjct: 308 EIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSE 367

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN++ +K            + + +GD V++++AG+VIP+++  + + R    + 
Sbjct: 368 VEFATLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSERE 416

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP C + +      K G +    RC    AC AQ  ER+ +   R+  +IE  G
Sbjct: 417 FVMPAECPECGTPL---KAMKEGDI--DLRCPNARACPAQLRERVAYLAGRECLDIEHFG 471

Query: 488 KQQLDFFFKSEDPAFSIRI-PADIFTL--------------------QRRQQTSTTKIEN 526
                      +P+    +   D+F L                    +R  +T   KI  
Sbjct: 472 GVVAAALTGPLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKIAT 531

Query: 527 IL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
           +     G    +   L   I + +   L RFI  L IR+VG   A++LA+ + S     Q
Sbjct: 532 VFANKEGEPKKNTLALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQ 591

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY------QNPRNICAVEALLKEVSPSI 636
                +A  +           VG  IA A+ E++      +  R   A    L++ S   
Sbjct: 592 ATEEELASTDG----------VGGAIATAVKEWFAVDWHREIVRKWKAAGVPLEDRSTG- 640

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              E      +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGS
Sbjct: 641 ---EDEGPRPLEGLTVVVTGTLENFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGS 697

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQ 720
           K +KA QL V ++NE+ F  LL+Q
Sbjct: 698 KYDKAMQLKVPVLNEDGFAVLLEQ 721


>gi|119717662|ref|YP_924627.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614]
 gi|166216220|sp|A1SMA5|DNLJ_NOCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119538323|gb|ABL82940.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614]
          Length = 752

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 218/722 (30%), Positives = 371/722 (51%), Gaps = 53/722 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   R+E   + +EI      YY    P I D+++D   RR +A+   FP+L     P+ 
Sbjct: 60  VTDPREEHRLIAEEIEEARWRYYVLDSPTIDDADFDRRMRRLEALEEEFPEL---RTPDS 116

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +GG ++       H     SL+  +++E++  +  R+ R     +D ++   L  K
Sbjct: 117 PTQTVGGAVSTDFTSHPHLRRMESLDNAFSVEEVEAWYARLRR--DGVEDPALLCEL--K 172

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRG 189
           +DG  I + YE+G+ V A  RGDG +GEDV++ ++ I ++P  L+      +P ++EVRG
Sbjct: 173 VDGLAINLLYEEGRLVRALTRGDGTTGEDVTSNVKTITSVPHRLTGTDEFPVPALVEVRG 232

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248
           EV++    F  LN+ ++  G+ P+ANPRN+A+G LR+ +P    +R L    HG+G+   
Sbjct: 233 EVFLPVEAFERLNESLLEAGKAPFANPRNSAAGSLRQKDPRITASRALGMVCHGIGERRG 292

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVYKVD 307
              + Q      +   G P ++ VR  +T  G+  Y     + R T+ PY+IDG+V KVD
Sbjct: 293 FEPQAQSHAYDALAAWGLPTSDQVRVVSTLKGVEGYIENAGARRHTIVPYEIDGVVVKVD 352

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ++LG  +R+PRW I+ K+  ++ + +LL+I + +GRTG +TP A +EP  + G+ 
Sbjct: 353 DVALQRRLGSTSRAPRWAIAFKYPPEEVNAKLLEIRVNVGRTGRVTPYAVMEPTKVAGST 412

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           + NATLHN   ++  D     +R G     GD V++++AG+VIP+++  ++  R    QP
Sbjct: 413 VENATLHNFYEVERKD-----VRPGGPGDPGDTVILRKAGDVIPEILGPVLALRPEGLQP 467

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C + +V     K G      RC     C  Q  ER+    SR+AF+IEGLG
Sbjct: 468 WVPPTTCPSCGTPLVEQ---KEGD--KDRRCPNHEKCPGQLRERVFFVASRNAFDIEGLG 522

Query: 488 KQQLDFFFKSE-----------DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
            +       +E           D A  +R P  +FT   ++     ++         +  
Sbjct: 523 YEAAVALLDAEVIANEGDVFDLDAAALLRAP--LFTRAPKKDEDGPQL-------SANGQ 573

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            L D+++K + + L R + +L IRHVG +  R+LA  + S           +A       
Sbjct: 574 RLLDNLDKAKQVPLWRVLVALSIRHVGPKAGRALATEFGSMAAIRAATEEQLAAAEG--- 630

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
                  VG  IA+A++E+++ P ++  V+   +         +++    +    +V TG
Sbjct: 631 -------VGPTIAEAVIEWFKEPWHVEIVDKWERAGVTMADERDESTPRTLAGLTVVVTG 683

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L    R  A+E +   G   +  +S+KTD ++VG+N GSK +KA+QLGV +++E  F  
Sbjct: 684 SLVDFSRDSAKEAILSRGGKAAGSVSKKTDYVVVGENAGSKADKAEQLGVPVLDEAGFKT 743

Query: 717 LL 718
           LL
Sbjct: 744 LL 745


>gi|320529157|ref|ZP_08030249.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399]
 gi|320138787|gb|EFW30677.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399]
          Length = 672

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 221/710 (31%), Positives = 355/710 (50%), Gaps = 44/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I+  + EL+ L ++I  +   YY  +   I D E+D L  R  AI   +P+L      N 
Sbjct: 4   IQAVKAELAELRRQIRRYSKQYYDDNASDISDYEFDQLMLRLKAIEAEYPELITK---NS 60

Query: 74  PLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P  K+GG    +    V H +P LSL+ +++  ++R F+  I   +   +     F +E 
Sbjct: 61  PTQKVGGSAQRTAGVLVKHDVPMLSLQDVFSEAEIRDFVAGICAHFPAAE-----FVVEE 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           KIDG  + +RYE G    A  RGDG   GEDV+   R I  +   LS + P   EVRGEV
Sbjct: 116 KIDGLSLALRYENGVLARAVTRGDGIVQGEDVTENARMIADVREQLS-DAPVYFEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+ +  F A+N+    +G KP+ANPRN A+G LR+L+      R L+ FV  L +T    
Sbjct: 175 YMERAAFAAVNERQELLGLKPFANPRNCAAGTLRQLDARVTRERRLSMFVFNLQRTEGRT 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                     MR  G  +  G R   T   + +   E+ + R +LPYDIDG V KV++FS
Sbjct: 235 FASHTASYDFMRAQGIKIIAGYRVCRTADEVWAAIEEIGARRGSLPYDIDGAVVKVNDFS 294

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            + +LG  A++PRW I++K+  ++  T L +I++ +GRTG +TP A  +PV + G  +  
Sbjct: 295 QRAELGATAKAPRWAIAYKYPPEEKETVLREIELSVGRTGRITPTAVFDPVQLCGTRVER 354

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+DYI GL           D+R+GD +LV ++GE+IP+V  +++ +R     P+  
Sbjct: 355 ATLHNQDYIAGL-----------DVRIGDTILVYKSGEIIPRVKGVVLEKRPASTVPYVI 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP+C +  VR+ +       A  +C   + C AQ    + HFVSR A +I+G G   
Sbjct: 404 GDTCPVCGAPAVREAD------TADMKCQNPV-CPAQVENHILHFVSRTAMDIKGFGTAA 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +         A  +   ADI+TL   +         I+G  + +V  L D+I   +    
Sbjct: 457 VIALTH----AGYLHDIADIYTLYEHRDELIAS--GIIGR-EKTVDKLLDAIAHSKENPP 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R +  LGI  +G   A SL + + S    A+           D   ++ VP +G++ A+
Sbjct: 510 DRLLTGLGIAGIGRAAAISLMQEFPSVDALAEAARG-------DAEKILAVPDMGEVSAR 562

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ EF+ +  +   +E         +    +   + +E K  V TGTL  + R +    +
Sbjct: 563 SLAEFFGSEASRGLLEKFRAAGVNFVSAPRERTGTALEGKSFVITGTLPTLSREECAALI 622

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           T  G  V   +S+KTD ++ G+  GSKL KA+ L + +++E     ++++
Sbjct: 623 TAHGGTVKGSVSKKTDYLVAGEAAGSKLAKAESLDIPVLDEAALRRMIEE 672


>gi|325913348|ref|ZP_08175716.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B]
 gi|325477451|gb|EGC80595.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B]
          Length = 672

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 229/717 (31%), Positives = 379/717 (52%), Gaps = 69/717 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L    DP
Sbjct: 4   LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLL---DP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG     L KV H  P LS+  +++ ++L +F  RI    QK   + + + +E
Sbjct: 61  DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y+ GK V A+ RG+G  GEDV+A    I  IP+ L   I   IEVRGE 
Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGRIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G   +ANPRNAA+G LR+L+  ++T  R L+ F++      E 
Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +++
Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+ 
Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   +V        K   A RC   + C AQ  E + HF SR A NI GLG +
Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454

Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
              QL       D        AD++ L      S  ++  +  F D S+ NL ++I   +
Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+E  +F LGI HVGA+ AR +AK +        ++N I   +  D   L+++  +G 
Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAKKF-------HDLNTIRECSIAD---LMQIDTIGQ 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658
            IA+++V++++      +V+AL+ ++  +      +G  +     +   + K +V TG L
Sbjct: 552 TIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
               R    + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +
Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVI 664


>gi|237733138|ref|ZP_04563619.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383820|gb|EEO33911.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 664

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 231/705 (32%), Positives = 369/705 (52%), Gaps = 59/705 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L+  I YH+D YY    P I D EYD + +    +    P+   S+ P     K+GG   
Sbjct: 10  LKATILYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITSDSPT---QKVGGSAK 66

Query: 84  LSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                 V H++P LSL+ +++ ED+  F+  +    Q  D     F +E KIDG  + +R
Sbjct: 67  REAGVLVRHNVPMLSLQDVFSKEDVDAFVADMQE--QLVDPT---FVVEYKIDGLSMALR 121

Query: 143 YEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
           Y  GK   A  RGDG   GEDV+   + I  +   L   I E +EVRGEVY++   F  +
Sbjct: 122 YVNGKLDVAVTRGDGVLQGEDVTVNAKVIKDVKNTLKEPI-EYLEVRGEVYMTNEAFDKV 180

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL--GKTSEIFAKGQ-YE 256
           N+     G+K +ANPRN A+G LR+L+ + IT  R L+ FV  +   K  E  +  + YE
Sbjct: 181 NEIQEIKGKKLFANPRNCAAGTLRQLDSS-ITKERNLSMFVFNIQDAKGREFISHSEGYE 239

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L++    G  +    +   T   +      +   R  L YDIDG V K+D F+ +++LG
Sbjct: 240 YLKRQ---GIKIIEDYKICKTAKEVWEAIEAIGENRDKLGYDIDGAVVKIDSFADRQKLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PRW +++K+  ++  T+LL I++ +GRTG +TP A  EP+ + G  ++ ATLHN+
Sbjct: 297 ATAKVPRWAVAYKYPPEEKETKLLAIELSVGRTGRITPTAIFEPIRLCGTTVSRATLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I  L           D+R+GD ++V ++GE+IPKV  ++  +R  D+ P+   + CP+
Sbjct: 357 DFIDDL-----------DVRIGDTIVVYKSGEIIPKVKGVVKEKRPADSVPYVIGNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR+ +       A  +CT   +C ++ +  + +FV RDA +I+G G   ++    
Sbjct: 406 CGAPAVREGDN------ADIKCTNH-SCPSKLVRNIVNFVGRDAMDIKGFGFAYVETLV- 457

Query: 497 SEDPAFSIRIPADIFTL-QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             D  + ++  +DI+ L  +RQ+    KI  ++     S  NL ++I   +N    + + 
Sbjct: 458 --DHGY-LKDLSDIYGLIDKRQELLDKKIIGLVK----STDNLLNAIEGSKNNDAIKLLT 510

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGI +VG   A+SL K + S  N  +            +  LI V  +GDI A AI+ +
Sbjct: 511 SLGISNVGKSAAKSLMKKFKSIDNLMKA----------SYAQLIEVNDIGDISAMAIINY 560

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++NP N   V+  LKE   ++   E     E  + K  V TGTL  + R  A E + + G
Sbjct: 561 FKNPDNQAVVQR-LKEYGVNMNIIEAQDGDERFDGKTFVVTGTLPTLSRKAASELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             VS  +S+KTD ++ G+N GSKL KAQ LG+ +++EE  L +++
Sbjct: 620 GKVSGSVSKKTDYLLAGENAGSKLTKAQNLGINVISEETLLEMVK 664


>gi|224437677|ref|ZP_03658624.1| NAD-dependent DNA ligase LigA [Helicobacter cinaedi CCUG 18818]
 gi|313144124|ref|ZP_07806317.1| DNA ligase [Helicobacter cinaedi CCUG 18818]
 gi|313129155|gb|EFR46772.1| DNA ligase [Helicobacter cinaedi CCUG 18818]
          Length = 651

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 237/697 (34%), Positives = 366/697 (52%), Gaps = 64/697 (9%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           +++YH   YY    PI  DS+YD L  +        P L     PN P  ++GG    S 
Sbjct: 15  KMAYH---YYVLDDPIATDSQYDELYHQVLNFERQNPILI---SPNSPTQRVGGTPLESF 68

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
            K +H     SLE ++N  +++++  RIY+ +         FT  PK DG  + + Y  G
Sbjct: 69  SKNSHIERMWSLEDVFNQAEMQEWCERIYKSYPHSH-----FTCSPKFDGASLNLLYRDG 123

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
             V A  RGDG  GE V++  R I +IP  LS++    IE+RGEV I+K+DF  +N+E +
Sbjct: 124 ILVSATTRGDGIVGELVTSNARTIQSIP--LSIDYKGEIEIRGEVVIAKDDFEKINNERL 181

Query: 207 AVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
                 +ANPRNAA+G LR+L+ + IT  R L F   G+G     F    YE LQK+   
Sbjct: 182 EQNLSLFANPRNAAAGSLRQLD-SKITAQRKLRFMPWGIGAGLSQFGSF-YEALQKITDF 239

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF     +        I+  Y  + S R   P  +DG+V  +DE  +Q++LG   ++PR+
Sbjct: 240 GFAPVPFLTHCEGSDDIMQMYKILISKRDDYPIMLDGMVIMLDEIEIQQRLGWTIKAPRF 299

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             + KF   + S+++LDI +Q+GRTGI+TPVA LEPV I GA+I  ATLHN   I+    
Sbjct: 300 ACAFKFPAVEKSSKILDITLQVGRTGIITPVAELEPVEIEGAMIARATLHNFSEIE---- 355

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC-QSRVVR 443
                   +DIR+ D V++ R+G+VIPK++  I   R     P + P+ CP+C Q  ++ 
Sbjct: 356 -------RKDIRINDEVIIIRSGDVIPKIIKPITALRDGTQIPITKPTHCPVCRQELLIE 408

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           ++  K         C   L+C A+ +E + HF S+ A NI+GLG++ +   F++      
Sbjct: 409 EIFIK---------CQ-NLSCEARVIESIIHFASKKALNIDGLGEKIVIQLFENG----L 454

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           I+   DI+ L+  Q  +      + G+ +    NL  +I     + L RFI +LGI H+G
Sbjct: 455 IQSILDIYALEESQLLA------LEGWKEKRAKNLIVAIQNTIGVELWRFINALGIEHIG 508

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              ++ LA+ +     F+ +   I+  +             G+ +A ++VEF  N  N  
Sbjct: 509 EGASKRLAQSF-GRDTFSADFQQILGLDG-----------FGEEMAYSLVEF--NHANKE 554

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            +  LL+ +SP I + + +       K +V TGTL K  R +  E +   GA +S+ +S+
Sbjct: 555 LIAKLLEIISPKIEQIKLDSGHIFYGKSIVLTGTLNK-PRDEIVEMLESKGAKISSSVSK 613

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           KTD +I G+  GSKLEKAQ LGVK ++EE+F+  +Q+
Sbjct: 614 KTDFVIYGEKAGSKLEKAQNLGVKTLSEEEFMACMQE 650


>gi|315613211|ref|ZP_07888121.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296]
 gi|315314773|gb|EFU62815.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296]
          Length = 652

 Score =  343 bits (880), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 222/686 (32%), Positives = 363/686 (52%), Gaps = 67/686 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V  A R
Sbjct: 76  LYSLQDAFSREELEAFDARV-----RKELPQPTYICELKIDGLSISLTYEKGILVVGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLEHLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A +   I  +  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAESMDEIWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S+++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDSQLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS---EDPAFSIRIPA 508
              A RC     C AQ +E L HF SRDA NI GLG   ++  F +   +D A   R+  
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAANLVKDVADIYRLKE 465

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D F L             + G  + S + LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 466 DDFLL-------------LEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP-RNICAVEA 627
            L +++ S +N AQ           D   +  +  +G +IAQ++  ++     NI   E 
Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFATEGSNILLDE- 561

Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
            LKE   ++    + V ++  +    +V TG L+++ R +A+  +  LGA V+  +S+KT
Sbjct: 562 -LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKVTGSVSKKT 620

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNE 711
           ++++ G + GSKL+KAQ+LG+++ +E
Sbjct: 621 NLVVAGADAGSKLQKAQELGIEVRDE 646


>gi|270292770|ref|ZP_06198981.1| DNA ligase, NAD-dependent [Streptococcus sp. M143]
 gi|270278749|gb|EFA24595.1| DNA ligase, NAD-dependent [Streptococcus sp. M143]
          Length = 652

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 221/685 (32%), Positives = 367/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V  A R
Sbjct: 76  LYSLQDAFSREELEAFDARV-----RKELPHPTYICELKIDGLSISLTYEKGILVAGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE ++  VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEKLDITVRGECYMPRASFDLVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S+++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDSQLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            L         K E+ L   G  + S + LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RL---------KEEDFLLLEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +++ S +N AQ           D   +  +  +G +IA+++  F+    +   ++  
Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGSVIAKSLQTFFATEGSKILLDE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++ G + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646


>gi|307708748|ref|ZP_07645210.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261]
 gi|307615114|gb|EFN94325.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261]
          Length = 652

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 221/685 (32%), Positives = 363/685 (52%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V  A R
Sbjct: 76  LYSLQDAFSREELEAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVVGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++     S      Q ++L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASLST--RDSQEKVLKHLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRISE-EKLDIPTNCPSCNSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSVVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S + LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RLQE---------EDFLLLEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +++ S +N AQ           D   +  +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++ G + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646


>gi|256390514|ref|YP_003112078.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928]
 gi|256356740|gb|ACU70237.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928]
          Length = 723

 Score =  343 bits (879), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 226/728 (31%), Positives = 355/728 (48%), Gaps = 65/728 (8%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           ++L +EI      YY    P I D+++D   R+ +AI  A P+L     P+ P  K+ G 
Sbjct: 14  AALAEEIENARYRYYVLDAPTISDADFDVKLRQLEAIEDANPEL---RTPDSPTQKVAGA 70

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL-EPKIDGTMIT 140
                  V H    LSL+  +  E+L+ +  RI     +KD  ++   L E K+DG  I 
Sbjct: 71  YETEFTSVPHLERMLSLDNAFTAEELQTWADRI-----EKDLGALPELLCELKVDGLAIN 125

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYISKN 196
           + YEKGK   A  RGDG +GED++   + I TIP+ L+      +PE++EVRGEVY +  
Sbjct: 126 LLYEKGKLTRALTRGDGRTGEDITPNAKTIQTIPQTLTGTDEFPVPELVEVRGEVYFAVQ 185

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255
            F   N++++A   + YAN RNAA+G LR+ +P     R L+  VHG+G         Q 
Sbjct: 186 AFDEWNEKILAETGRSYANARNAAAGSLRQKDPRVTAQRPLSMVVHGIGARKGFTPTSQS 245

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
              + +R  G P ++ V+   T   +  Y +     R  + ++IDG+V KVD   +Q +L
Sbjct: 246 HSYEALRAWGLPTSDRVKVVKTLKDVQKYIDYYNKHRHDVEHEIDGVVVKVDALPIQGRL 305

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I+ K+  ++ +T+LLDI +Q+GRTG +TP A +EPV + G+ + NATLHN
Sbjct: 306 GSTSRAPRWAIAFKYPPEEVTTKLLDIRVQVGRTGRVTPYAVMEPVTVAGSTVQNATLHN 365

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           +  +        V +G   + +GD V++++AG+VIP++V  + + R    + F  P  CP
Sbjct: 366 QAIV--------VKKG---LLIGDTVVLRKAGDVIPEIVGAVQDLRDGSEREFVMPENCP 414

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C +++      K G +    RC     C  Q  ER+    SR+A +IE LG +      
Sbjct: 415 DCGTKLAPQ---KEGDI--DLRCPNSQFCLGQIRERIDFMGSRNALDIEALGYESAVALT 469

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF----GDVSVTNLYDSINKRRNIS-- 549
           +       +    D+ +L+         +++  G     G+  +   + +    +  S  
Sbjct: 470 QPAAGTAPVHDEGDLLSLKLEDLADLKMLQSKRGADAKPGETELVPYFFTKGTPKKPSVP 529

Query: 550 -------------------LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
                              L RF+ SL IRHVG   AR LA+ + S+   A      +  
Sbjct: 530 TATTELLLQQLELVKTDRPLWRFLVSLSIRHVGPTAARVLAREFPSFDALANATEEDLKA 589

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
            N           +G  IA AIVE++    +   +          +   +      +E  
Sbjct: 590 ANG----------IGPTIATAIVEWFAVDWHRAIIGKWQAAGVVPVVESQPEGPRPLEGL 639

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TGTL    R  A E +T  GA VS  +S+KT  ++VGDNPG+K +KA  LGVK+++
Sbjct: 640 SVVVTGTLAGFTRDGAAEELTSRGAKVSGSVSKKTSFVVVGDNPGTKYDKALSLGVKVLD 699

Query: 711 EEQFLFLL 718
           EE F  LL
Sbjct: 700 EEGFKVLL 707


>gi|47169437|pdb|1V9P|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase
 gi|47169438|pdb|1V9P|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase
          Length = 584

 Score =  343 bits (879), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 207/570 (36%), Positives = 321/570 (56%), Gaps = 47/570 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+AR+ ++ L   I YH+  YY  + P I D+EYD L R    +   FP+    + P
Sbjct: 1   MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEF---KSP 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G       F+ V H     SL+  +  E++  F  R+ R   +K      +T+
Sbjct: 58  DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALGRK--RPFLYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG  GE+V+  +  IPTIPR L   +P+ +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLK-GVPDRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P    +      F+  GLG   
Sbjct: 175 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLG-LE 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E   K QYE+L  ++  GFPV +G  +A    G+   Y    + R  LP++ DG+V K+D
Sbjct: 234 ESGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPFEADGVVVKLD 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +L ++LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV I G+ 
Sbjct: 294 DLALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSE 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  + +P
Sbjct: 354 VSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERP 402

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             +P  CP C  R+V     K GK+   HRC   L C A++ E ++H+ SR A +IEGLG
Sbjct: 403 IRWPETCPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIEGLG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINK 544
           ++ ++   +       +R  AD++ L++         E++LG    G+ S  NL   I +
Sbjct: 454 EKLIERLLEK----GLVRDVADLYHLRK---------EDLLGLERMGEKSAQNLLRQIEE 500

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYY 574
            ++  LER +++LG+  VG  +AR+LA+ +
Sbjct: 501 SKHRGLERLLYALGLPGVGEVLARNLARRF 530


>gi|306827641|ref|ZP_07460921.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782]
 gi|304430204|gb|EFM33233.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782]
          Length = 652

 Score =  343 bits (879), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 219/696 (31%), Positives = 365/696 (52%), Gaps = 56/696 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KEL+ L     Y    YY    P + DS+YD L R    +  ++P+    + P     ++
Sbjct: 6   KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG  
Sbjct: 60  GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  F
Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
            A+N+     G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q E+
Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLYQ--EASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+   +    P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKED------FMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + +          +I+ ++    ++   + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILE-------VCGDISALLTAKEEE---IARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L    V+      + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647


>gi|15900984|ref|NP_345588.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae TIGR4]
 gi|81531953|sp|Q97QT2|DNLJ_STRPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|14972593|gb|AAK75228.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae TIGR4]
          Length = 652

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 76  LYSLQDAFSCEELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG+++++
Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N +Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646


>gi|306829554|ref|ZP_07462744.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249]
 gi|304428640|gb|EFM31730.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249]
          Length = 652

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 218/685 (31%), Positives = 364/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V  A R
Sbjct: 76  LYSLQDAFSREELEAFDARV-----RKELPHPTYICELKIDGLSISLTYEKGILVAGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE ++  VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEKLDITVRGECYMPRASFDLVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A +   I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAESMDEIWNFIQEVGQEREHLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S+++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDSQLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS---EDPAFSIRIPA 508
              A RC     C AQ +E L HF SRDA NI GLG   ++  F +   +D A   R+  
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAANLVKDVADIYRLKE 465

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D F L             + G  + S + LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 466 DDFLL-------------LEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +++ + +N AQ           D   +  +  +G +IAQ +  ++    +   ++  
Sbjct: 513 LLLQHFHTIENLAQA----------DPEEVASIESLGSVIAQGLQTYFATEGSKILLDE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L+++ R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKEAEVNLAYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++ G + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVAGTDAGSKLQKAQELGIEVRDE 646


>gi|332141274|ref|YP_004427012.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551296|gb|AEA98014.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 517

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 200/546 (36%), Positives = 307/546 (56%), Gaps = 46/546 (8%)

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFF 239
           P+ +EVRGEV++ +  F  LN+     G K +ANPRNAA+G LR+L+ + IT  R L F+
Sbjct: 8   PDRVEVRGEVFMPREGFAKLNEHQKNAGGKVFANPRNAAAGSLRQLD-SKITAKRPLMFY 66

Query: 240 VHGLGKTSE---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
            + LG              E L ++   G P+   +  A    G + YY+ +   R  LP
Sbjct: 67  AYSLGVVQPDNFTLPTTHSERLSQLGKWGLPLCPDIDTAEGGRGCLDYYHHILEKRDNLP 126

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           YDIDG+V+KV+   LQ  LG  AR+PRW I+ KF  ++  T+LLD++ Q+GRTG +TPVA
Sbjct: 127 YDIDGVVFKVNRIDLQAALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVA 186

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           RLEPV +GG  ++NATLHN+D I  L            ++VGD V+++RAG+VIP+VV +
Sbjct: 187 RLEPVFVGGVTVSNATLHNQDEITRL-----------GVKVGDTVVIRRAGDVIPQVVSV 235

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +  +R       +FPS CP+C S+V +  +       A  RCTGGL C+AQ+ + LKHF 
Sbjct: 236 VDTKRTGSETDIAFPSQCPVCGSQVEKLEDE------AVARCTGGLICAAQRKQALKHFA 289

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR AF+I+GLG + +D    ++     +  PAD FTL      S   +  +    + S +
Sbjct: 290 SRKAFDIDGLGDKLVDQLVDAD----LVHSPADFFTL------SLGDVVGLERMAEKSAS 339

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            L  S+   +  +L +F+++LGIR VG   A +LA ++            + A  +    
Sbjct: 340 KLLSSLEASKQTTLAKFLYALGIREVGEATAANLAAHF----------ETLDAIRDASIE 389

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVF 654
           +L+ V  VG+I+A  I  F+    N   ++ALLKE    P+I + + + +  +E K  V 
Sbjct: 390 ALVEVQDVGEIVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDAD-NLPLEGKTCVI 448

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL ++ R  A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+L V++ +E + 
Sbjct: 449 TGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELDVEVWDEAKL 508

Query: 715 LFLLQQ 720
           +  L +
Sbjct: 509 IAFLAE 514


>gi|111658008|ref|ZP_01408712.1| hypothetical protein SpneT_02000805 [Streptococcus pneumoniae
           TIGR4]
          Length = 648

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 15  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 71

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 72  LYSLQDAFSCEELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 126

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 127 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 182

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 183 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 240

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 241 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 300

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 301 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 349

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 350 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 404

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 405 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 457

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG+++++
Sbjct: 458 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 508

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N +Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 509 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 557

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 558 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 617

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 618 LVVVGADAGSKLQKAQELGIQVRDE 642


>gi|209527955|ref|ZP_03276440.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328]
 gi|209491614|gb|EDZ91984.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328]
          Length = 680

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 225/703 (32%), Positives = 358/703 (50%), Gaps = 58/703 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I Q  ++L    Q  SY    YY    P + D  YD L R    +   +P+L     P+ 
Sbjct: 13  ISQKLEQLRLTVQRASY---AYYVLDAPTMEDGVYDRLYRELQELETQYPELI---SPDS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDNSIFFTL 130
           P  ++G +       V H+I   SLE  +N+ +L+ +  +  RF   W  +D+N   +  
Sbjct: 67  PTQRVGEKPATQFESVRHNISLYSLENAFNMAELQAWDEKWRRFLGNWAAEDNN---YIC 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRG 189
           E KIDG+ I + Y  G  V  A RGDG +GED++  I+ I +IP  L L N P ++EVRG
Sbjct: 124 ELKIDGSAIALTYHDGILVRGATRGDGVTGEDITQNIKTIRSIPLKLHLDNPPPVVEVRG 183

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E ++    F  +N E    G   +ANPRNAA+G LR+L+   +  R+L+FF + L   S 
Sbjct: 184 EAFLYNRIFAEINQERQKNGEPLFANPRNAAAGTLRQLDSRIVAARHLDFFAYTLHLDSP 243

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 ++ L+ +  +GF VN   +   +   +  Y+N  ++ R  LPY  DG+V K++ 
Sbjct: 244 NL-HDHWDCLELLPKMGFKVNPNRQLCQSLLEVQQYFNTWETQRRELPYMTDGVVVKLNS 302

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQKQLGE  + PRW I+ K+  ++  T+++ +  Q+GRTG LTPVA LEP+ + G  +
Sbjct: 303 LSLQKQLGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTV 362

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN+D +  L           D+ +GD V+V++AGE+IP+VV ++ + R   A+  
Sbjct: 363 KRATLHNQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLV 411

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P+ CP C   VV+   P+     A  RC    +C A     + H+  R A +I G+G+
Sbjct: 412 TMPTHCPECGETVVKT-PPE-----AVTRCINS-SCPAIVRGSIIHWCGRRALDINGIGE 464

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +    +++     +R  AD++ L   Q  +  +       G  S   + ++I   +  
Sbjct: 465 KLVQQLVETQ----LVRSVADLYHLNMDQLVALER------QGQKSAQKILEAIAASKKQ 514

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R ++ LGIR+VG   A  LA+ + S Q+ A   +  I            V  +G  I
Sbjct: 515 PWHRVLYGLGIRYVGEVNAELLAQNFPSCQSLAAASSAQIEG----------VYGIGAEI 564

Query: 609 AQAIVEFYQNPRNICAVEAL----LKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           A ++ +++QNP NI   + L    L+  S PS        +     K  V TGTL  + R
Sbjct: 565 ATSVYQWFQNPANISLCDRLEQSGLQLASVPSTALKSTPQAQPFAGKTFVLTGTLPTLTR 624

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
            +A+  + + G  V+  +++K D +++GD PGSKL KAQ LG+
Sbjct: 625 EEAKSIIEKAGGKVTNSVTQKVDYLLLGDKPGSKLAKAQNLGI 667


>gi|332880187|ref|ZP_08447868.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681836|gb|EGJ54752.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 670

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 225/706 (31%), Positives = 364/706 (51%), Gaps = 50/706 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++++  L  E+  H+  YY  + P I D E+D + R    +  A P+    +DP+ P 
Sbjct: 4   EVKEQIERLRNELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEF---DDPDSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N    +V H  P LSL   +N +++  F  R+    + +         E K D
Sbjct: 61  RRVGSDLNQEFVQVPHRYPMLSLSNTYNKQEVADFYERVRSGLEGE---PFEICCEMKYD 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  I++ YE+G+ V A  RGDG  G+DV+  ++ I  IP  L+ N  PE  E+RGE+ + 
Sbjct: 118 GLSISLTYEQGRLVRAVTRGDGVQGDDVTENVKTIRCIPLRLNGNGYPEEFEIRGEILMP 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  LN E        +ANPRNAASG L+  N   +  R L+ +++ L     I   G
Sbjct: 178 WTSFETLNREREEREEPLFANPRNAASGTLKSKNSAVVAQRKLDAYLYYL-LGEHIPFDG 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ  R  GF ++ G+++  T   I  + +     R  LP   DG+V KV+    Q+
Sbjct: 237 HYENLQAARSWGFKISGGMKKVTTLQDIYDFIDYWDVERKNLPVATDGIVLKVNSQRQQR 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA ++PV + G ++  ATL
Sbjct: 297 ALGYTAKSPRWAIAYKFQAERARTRLNAVTFQVGRTGTVTPVANMDPVQLAGTVVRRATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS-FPS 432
           HN D ++ L           D+ +GD V V++ GE+IPK+V +  + R P+  P + F +
Sbjct: 357 HNADVMEQL-----------DLHIGDMVYVEKGGEIIPKIVGVDADARGPETGPRAEFIT 405

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +VR      G+  AA  C    AC  Q   R++H++SR A NI+ LG + +D
Sbjct: 406 RCPECGAELVR----YEGE--AAWYCPNDTACPPQIKGRIEHYISRRAMNIDSLGPETVD 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            +++       IR  AD++ +Q +Q      I    G  + S   +  SI     +  ER
Sbjct: 460 DYYRRG----LIRDVADLYDIQVQQ------INGEDGTREKSAQKIVRSIADSVEVPFER 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGIR VG   A++LA+++ S    A       A   D    ++++  +G +IA+++
Sbjct: 510 VVFALGIRFVGEIAAKALARHFKSMDALAS------ASLED----MLQINGIGVVIAESV 559

Query: 613 VEFYQNPRNICAVEALL-KEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + ++ N  N   V  L  K V   +   E  + S ++  + +V +G      R + +  +
Sbjct: 560 IRYFANEANRDLVRRLREKGVRMELSDEELSSHSDKLSGQSIVVSGVFSLHSRDEYKAMI 619

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
            Q G      +S KT  ++ G N G +KLEKA +LG+ I++EE+FL
Sbjct: 620 EQHGGKNVGSISSKTSFVLAGANMGPAKLEKAGKLGIPILSEEEFL 665


>gi|157737313|ref|YP_001489996.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri RM4018]
 gi|166215390|sp|A8ETQ3|DNLJ_ARCB4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157699167|gb|ABV67327.1| DNA ligase [Arcobacter butzleri RM4018]
          Length = 648

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 225/694 (32%), Positives = 375/694 (54%), Gaps = 60/694 (8%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           ++E+ IS+ +  YY +  PI  D EYD L R C A     P L+    PN P  ++GG +
Sbjct: 9   NIEKLISWAN-AYYVFDNPIATDEEYDKLARLCLAYEQENPKLSH---PNSPNKRVGGIV 64

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                K +H     S E ++N ++L  +I R       K + ++ F  +PK DG  + + 
Sbjct: 65  LDGFIKASHLSRMWSQEDVFNTQELEDWIKR-----ASKVNTNLEFFCQPKFDGASLNLI 119

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE G    A  RGDG  GEDV+   + I +IP  L +    +IE+RGEV I K DF  +N
Sbjct: 120 YENGILKQAITRGDGTVGEDVTNNAKTIFSIP--LEIEEKSLIEIRGEVVIKKADFEKIN 177

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQK 260
            E    G + +ANPRNAA+G LR+L+ ++IT  R L F V G+G+ S +  K   ++++ 
Sbjct: 178 IERAKNGEQLFANPRNAAAGSLRQLD-SNITAKRKLFFNVWGIGQNS-LEHKKYSQIMEY 235

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +  LGF        A+    I S Y++  SIR+     +DG+V K+D+   Q++LG   +
Sbjct: 236 IYSLGFERPQMQTLASNIEEIESLYHKFISIRNDFEMMLDGMVIKIDDIETQEELGYTVK 295

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
            PRW  ++KF   + +T+L  I +Q+GRTGI+TPVA +EP  I G+ ++ ATLHN D I+
Sbjct: 296 FPRWSCAYKFPAVEKTTKLKAITLQVGRTGIITPVAEVEPTLIDGSTVSRATLHNFDEIE 355

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            L           D+++ D V++ ++G++IPK+  +    R  D    S P+ CP C S 
Sbjct: 356 RL-----------DLKINDEVIIIKSGDIIPKITKVFFERRKGDEITISRPTSCPTCNSE 404

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           V+ +     G ++   +C   L C ++ +  + +F S++  NI+GLG + ++  F +E  
Sbjct: 405 VLDE-----GTMI---KCQ-NLDCPSRVVNSIIYFASKNCMNIDGLGNKIVEQLF-NEKK 454

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
            + I    DI++L+         ++++ GF +  + NL ++I   +   L R I +LGI 
Sbjct: 455 IYDI---LDIYSLKYED------LQDLEGFKEKKINNLLNAIENTKGSELHRVINALGIE 505

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           H+G   ++ +         F  ++       N D+ SLI +   G+ +A + +EF +  +
Sbjct: 506 HIGEVASKQIC------LEFGLDV------INKDYDSLIALDGFGEQMANSFIEFMRVNK 553

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           N+  VE L+  ++P +   ++   +  +NK +V TGT+ K  R + +  +  LGA VS+ 
Sbjct: 554 NL--VEKLISIINPKVEIKKEVSENPFKNKTVVITGTMSK-SRGEIKSMLEDLGAKVSSS 610

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           +S+KTD +I G++ GSK +KA +LGVK++ EE+ 
Sbjct: 611 VSKKTDYVIFGEDAGSKYDKAIELGVKLLTEEEM 644


>gi|116513594|ref|YP_812500.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275636|sp|Q04BW0|DNLJ_LACDB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116092909|gb|ABJ58062.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 671

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 221/718 (30%), Positives = 386/718 (53%), Gaps = 55/718 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+ +L  ++ 
Sbjct: 2   AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYSELKSADS 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
                 ++GGE+N  L KV H +P LS+  +++ E+L +F  R+    QK   + + + +
Sbjct: 62  IT---QRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRV----QKAIGHPVAYNV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YE+G+   A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE
Sbjct: 115 ELKIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSE 248
            Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++  +   + 
Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAG 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           I    Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+
Sbjct: 233 I--DSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDD 290

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ  LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G+ +
Sbjct: 291 LALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTV 350

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+
Sbjct: 351 ARASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPY 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V  L+ +      A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 400 EVPTKCPSCGEDLVH-LDEEV-----ALRCINP-SCPAQVEEGITHFASRQAMNIAGLGP 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I++ R  
Sbjct: 453 KIVKQLI-AKDLVHNV---ADLYYL------TADDLSQLDHFKEKSINNLLVAIDQSRKN 502

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI +VG + A+ +A+    ++N ++     IA  +   L+ I    +G  I
Sbjct: 503 SVELVLFGLGIDNVGGKAAQLIAR---KFKNMSK-----IASASVQELTAIDT--IGMTI 552

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++Q       + A L+E   +   +G   +   +  + K +V TG L    R +
Sbjct: 553 AESLTTYFQQ-EEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAE 611

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             + +  LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T
Sbjct: 612 FTKKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669


>gi|300867541|ref|ZP_07112191.1| DNA ligase [Oscillatoria sp. PCC 6506]
 gi|300334429|emb|CBN57361.1| DNA ligase [Oscillatoria sp. PCC 6506]
          Length = 690

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 244/744 (32%), Positives = 368/744 (49%), Gaps = 84/744 (11%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           ++P     ++Q RK+L    QE SY    YY    PI+ D  YD L R    +    P+L
Sbjct: 1   MMPEVQQRVQQLRKQL----QEASY---AYYVLDTPIMPDEVYDRLYRELQELETQHPEL 53

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK----- 120
              E P     ++G +       V H+IP  SLE  +NIE+  K+  R    WQ+     
Sbjct: 54  ISLESPT---QRVGEKPATHFSSVRHNIPLYSLENAFNIEEFIKWEER----WQRGIGTN 106

Query: 121 --------------KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSAC 166
                         K      +  E KIDG+ + + YE G  V  A RGDG +GE+++  
Sbjct: 107 EGELATGNTLESSQKTSPVSKYVCELKIDGSALALTYENGILVRGATRGDGVTGEEITQN 166

Query: 167 IRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR 225
           ++ I +IP  L L + P ++EVRGE ++S   F  +N E    G   +ANPRNAA+G LR
Sbjct: 167 VKTIRSIPLQLQLEDCPPLVEVRGEAFLSLAVFEEINQEREKSGDSLFANPRNAAAGTLR 226

Query: 226 RLNPTDIT-RYLNFFVHGL---GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281
           +L+   +  R L+FF + L   GK     A  Q + L+ ++ +GF VN   +       +
Sbjct: 227 QLDSKIVAKRRLDFFAYTLQIPGKEDIEVADTQCKSLELLQQMGFKVNPNRQLCLALDEV 286

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
             YY      R  LPY  DG+V K+++  LQKQLG   + PRW ++ K+  ++A T +  
Sbjct: 287 REYYQYWDIERRNLPYMTDGVVVKINDLRLQKQLGFTQKFPRWAVALKYPAEEAPTLVES 346

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           I + +GRTG LTPVA L+PV + G  ++ ATLHN D I  L           +I +GD V
Sbjct: 347 IAVSVGRTGALTPVAELKPVQLAGTTVSRATLHNSDRILSL-----------NIHIGDTV 395

Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
           +V++AGE+IP+VV ++   R   AQ F  PS CP C   VVR+      K  A  RC   
Sbjct: 396 IVRKAGEIIPEVVRVLPELRPEGAQSFQMPSCCPECGQPVVRE------KGEAVTRCI-N 448

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
            +C A     L HF SRDA +I G+G++ +     S      +   ADI+ L      + 
Sbjct: 449 TSCPAILRGALIHFCSRDAVDINGIGEKLVQQLVDSN----LVHSVADIYDL------TV 498

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            ++ N+   G      L  +I   +     R ++ LGIRHVG+  A  L + +   +  A
Sbjct: 499 ERLMNLERMGKKLADKLVGAIANSKTQPWSRILYGLGIRHVGSVNAVLLTERFPDVEQLA 558

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPS 635
                 I            V  +G  IAQ++ +++Q P N   +E L      LK  + S
Sbjct: 559 AASAATIEG----------VYGIGPEIAQSVYQWFQVPANQNLIERLKVAGLQLKSEATS 608

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
                KN+   +  K  V TGTL  ++R +A+E + + G  V+  +S KT+ ++VG++ G
Sbjct: 609 NKVEGKNLL--LAGKVFVITGTLPTLKRDEAKELIQKAGGKVTNSVSAKTNYLVVGEDAG 666

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKLEKAQ+LG+  ++E Q L +++
Sbjct: 667 SKLEKAQELGIVQLSEAQLLEMIK 690


>gi|145295383|ref|YP_001138204.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum R]
 gi|166215581|sp|A4QDK5|DNLJ_CORGB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|140845303|dbj|BAF54302.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 680

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 229/721 (31%), Positives = 365/721 (50%), Gaps = 72/721 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q R+  + L +++ YH D YY   +P I D+++DAL ++   +    P+LA    P+ P 
Sbjct: 7   QLRRTWNDLAEKVRYHRDRYYN-EQPEIPDADFDALFKQLQQLEEDHPELAV---PDSPT 62

Query: 76  NKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             +G  +    S   V H    LSL+ +++ ++LR ++ R           +  +  E K
Sbjct: 63  MVVGAPVAEQSSFDNVEHLERMLSLDNVFDEQELRDWLGRT---------PAKQYLTELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRG 189
           IDG  I + Y  G+   AA RGDG  GED++A  R I  IP  L       +P ++E+RG
Sbjct: 114 IDGLSIDLVYRNGQLERAATRGDGRVGEDITANARVIEDIPHQLQGTDEYPVPAVLEIRG 173

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EV+I+  DF  +N + IA G KP+ANPRNAA+G LR+ N  D+  R L    HG+G T  
Sbjct: 174 EVFITVEDFPEVNAQRIADGGKPFANPRNAAAGSLRQKNIEDVKKRRLRMISHGIGFTEG 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++    +   G P +           +V   +     R    +++DGLV KVD+
Sbjct: 234 FSPASQHDAYLALAAWGLPTSPYTEAVTDPEDVVKKVSYWADHRHDALHEMDGLVIKVDD 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV + G+ +
Sbjct: 294 IASQRALGSTSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVLVAGSTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+  +K         R G  + +GD V++++AGEVIP+V+  +V  R    + +
Sbjct: 354 SMATLHNQSEVK---------RKG--VLIGDTVVIRKAGEVIPEVLGPVVELRDGTEREY 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP C +R    L P     V   RC    +C  Q   RL +   R AF+IE LG+
Sbjct: 403 IFPTLCPECGTR----LAPAKADDV-DWRCPNMQSCPGQLSTRLTYLAGRGAFDIEALGE 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +  +   ++      +   + +F L      S+       G  + S   L D++ K +  
Sbjct: 458 KGAEDLIRT----GILLDESGLFDLTEDDLLSSNVYTTNAGKVNASGKKLLDNLQKSKQT 513

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL----- 603
            L R + +L IRHVG   AR+LA  Y S Q                  +LI  PL     
Sbjct: 514 DLWRVLVALSIRHVGPTAARALAGRYHSIQ------------------ALIDAPLEELSE 555

Query: 604 ---VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSE-IENKKLVFTGT 657
              VG IIAQ+  ++++   +   V+   K  +  +   E+   V+ + +E   +V TG 
Sbjct: 556 TDGVGTIIAQSFKDWFEVDWHKAIVD---KWAAAGVTMEEEVGEVAEQTLEGLTIVVTGG 612

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+   R   +E +   G   S  +S+KTD ++VG+N GSK  KA++LG++I++E  F+ L
Sbjct: 613 LEGFTRDSVKEAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLRILDEAGFVRL 672

Query: 718 L 718
           L
Sbjct: 673 L 673


>gi|104773603|ref|YP_618583.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|122984006|sp|Q1GBF7|DNLJ_LACDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|103422684|emb|CAI97297.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 671

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 221/718 (30%), Positives = 386/718 (53%), Gaps = 55/718 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+P+L  ++ 
Sbjct: 2   AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELKSADS 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
                 ++GGE+N  L KV H +P LS+  +++ E+L +F  R+    QK   + + + +
Sbjct: 62  IT---QRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRV----QKAIGHPVAYNV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YE+G    A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE
Sbjct: 115 ELKIDGLSLSLEYEEGCLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSE 248
            Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++  +   + 
Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAG 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           I    Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+
Sbjct: 233 I--DSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDD 290

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ  LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G+ +
Sbjct: 291 LALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTV 350

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+
Sbjct: 351 ARASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPY 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V  L+ +      A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 400 EVPTKCPSCGEDLVH-LDEEV-----ALRCINP-SCPAQVEEGITHFASRQAMNIAGLGP 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +     ++D   ++   AD++ L      +   +  +  F + S+ NL  +I++ R  
Sbjct: 453 KIVKQLI-AKDLVHNV---ADLYYL------TADDLSQLDHFKEKSINNLLVAIDQSRKN 502

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI +VG + A+ +A+    ++N ++     IA  +   L+ I    +G  I
Sbjct: 503 SVELVLFGLGIDNVGGKAAQLIAR---KFKNMSK-----IASASVQELTAIDT--IGMTI 552

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++Q       + A L+E   +   +G   +   +  + K +V TG L    R +
Sbjct: 553 AESLTAYFQQ-EEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAE 611

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             + +  LGA V+  +S+KT+ ++ G++ GSKL KA+ L +  + E + +  +++ +T
Sbjct: 612 FTKKLQALGAKVTGSVSKKTNCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669


>gi|315637028|ref|ZP_07892251.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22]
 gi|315478564|gb|EFU69274.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22]
          Length = 648

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 226/694 (32%), Positives = 374/694 (53%), Gaps = 60/694 (8%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           ++E+ IS+ +  YY +  PI  D EYD L R C A     P L+    PN P  ++GG +
Sbjct: 9   NIEKLISWAN-AYYVFDNPIATDEEYDKLARLCLAYEQENPKLSH---PNSPNKRVGGIV 64

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                K +H     S E ++N ++L  +I R       K + ++ F  +PK DG  + + 
Sbjct: 65  LDGFIKASHLSRMWSQEDVFNTQELEDWIKR-----ASKVNTNLQFFCQPKFDGASLNLI 119

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE G    A  RGDG  GEDV+   + I +IP  L +    +IE+RGEV I K DF  +N
Sbjct: 120 YENGILKQAITRGDGTVGEDVTNNAKTIFSIP--LEIEEKSLIEIRGEVVIKKADFEKIN 177

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQK 260
            E    G + +ANPRNAA+G LR+L+ ++IT  R L F V G+G+ S +  K   E+++ 
Sbjct: 178 IERAKNGEQLFANPRNAAAGSLRQLD-SNITAKRKLFFNVWGIGQNS-LEHKKYSEIMEY 235

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +  LGF        A+    I + Y++  SIR+     +DG+V K+D+   Q++LG   +
Sbjct: 236 IYSLGFERPQMQTLASNIEEIENLYHKFISIRNDFEMMLDGMVIKIDDIETQEELGYTVK 295

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
            PRW  ++KF   + +T+L  I +Q+GRTGI+TPVA +EP  I G+ ++ ATLHN D I+
Sbjct: 296 FPRWSCAYKFPAVEKTTKLKAITLQVGRTGIITPVAEVEPTLIDGSTVSRATLHNFDEIE 355

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            L           D+++ D V++ ++G++IPK+  +    R  D    S P+ CP C S 
Sbjct: 356 RL-----------DLKINDEVIIIKSGDIIPKITKVFFERRKGDEITISRPTSCPTCNSE 404

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           V+ +     G ++   +C   L C ++ +  + +F S++  NI+GLG + ++  F +E  
Sbjct: 405 VLDE-----GTMI---KCQ-NLDCPSRVVNSIIYFASKNCMNIDGLGNKIVEQLF-NEKK 454

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
            + I    DI++L+         ++++ GF +  + NL  +I   R   L R I +LGI 
Sbjct: 455 IYDI---LDIYSLKYED------LQDLEGFKEKKINNLLKAIENTRGSELHRVINALGIE 505

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           H+G   ++ +         F  ++       N D+ SLI +   G+ +A + +EF +  +
Sbjct: 506 HIGEVASKQIC------LEFGLDV------INKDYDSLIALDGFGEQMANSFIEFMRVNK 553

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           N+  VE L+  ++P +   ++   +  +NK +V TGT+ K  R + +  +  LGA VS+ 
Sbjct: 554 NL--VEKLISIINPKVEIKKEVSENPFKNKTVVITGTMSK-SRGEIKSMLEDLGAKVSSG 610

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           +S+KTD +I G++ GSK +KA +LGVK++ EE+ 
Sbjct: 611 VSKKTDYVIFGEDAGSKYDKAIELGVKLLTEEEM 644


>gi|303281478|ref|XP_003060031.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458686|gb|EEH55983.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 887

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 252/824 (30%), Positives = 391/824 (47%), Gaps = 137/824 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           AL   +    ++SL + IS  D+ Y+  + P+  D+ YDA + R +A+    P + R + 
Sbjct: 76  ALPASEVPAAMASLAEFISRADEAYHNDADPVASDAAYDATRLRLEALEALHPAMIREDS 135

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW---QKKDDNS-- 125
           P G +       + +L +V H++P  SL   ++ +D+R F+ R+ R     ++ DD++  
Sbjct: 136 PIGAVGAKPAAWS-ALPQVEHAVPMRSLGNCFDDDDVRAFVARVTRALGPPERFDDDARA 194

Query: 126 -IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NI 181
            + F  EPKIDG   ++RY  G  V AA RGDG  GEDV+  I  IP  P  L+    + 
Sbjct: 195 PLRFCAEPKIDGASASLRYVDGVLVVAASRGDGEVGEDVTRQIGGIPGAPTTLTGRAGDW 254

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-----TDITRYL 236
           P  +E+RGEV+I+ +DF ALN    A G   + + RNAA+G +RRL P      D  RYL
Sbjct: 255 PATLEIRGEVFIADDDFAALNARREARGMPTFKSARNAAAGAMRRLEPPSRDGADAGRYL 314

Query: 237 NFFVHGLG----KTSEIFAKGQYEMLQKMRCLGF-PVNN-GVRQANTFHGIVSYYNEMKS 290
            F  +G G    +T  +    Q   L  +  LG  PV   G    +    +   +  ++ 
Sbjct: 315 RFLAYGWGEVKPQTELLPWSSQRAFLASLPALGLSPVPTLGPITDDVAALVAGSHAALER 374

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R++L Y +DG+VYKVD+ + Q+ LG  +R+PRW  +HKFA + A T L  +D+Q+GRTG
Sbjct: 375 DRASLGYRVDGVVYKVDDVASQRILGADSRAPRWATAHKFAAETAVTTLRAVDVQVGRTG 434

Query: 351 ILTPVARLE-PVNIGGALITNATLHN-EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
            LTPVA L+ PV +GGA +T ATLHN ED          V R G  +R+G RV+V+RAG+
Sbjct: 435 ALTPVATLDPPVALGGATVTRATLHNFED----------VARKG--LRLGARVVVERAGD 482

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL---------------- 452
           VIP+VV  +V E   +    + P+ CP C S V +     + K                 
Sbjct: 483 VIPRVVR-VVAEGEEEGAVVATPTRCPACGSAVSKTPLAASVKCPKKRLSSPYESGDAAS 541

Query: 453 -----------------------VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
                                   A  RCTGG  C AQ LER+ HF SRDA ++ GL ++
Sbjct: 542 SSFAAVDDESEDATSSPSSSSSSAAVLRCTGGWRCPAQALERVAHFASRDALDVRGLARK 601

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRR-----------------------------QQTS 520
           Q+         A  I  PAD+FT++ R                                +
Sbjct: 602 QIADLLD----AGVIASPADLFTMRARFEHLGVDPDASGEDDDARGDGGGVAVPEFWTYA 657

Query: 521 TTKIENILGFGDVSVTNLYDSINKR-RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
           + K E  L     S   L+D++++    + L RFI+SLGI  VG   A+ L++ Y +   
Sbjct: 658 SGKDEGKL---KRSAKKLFDALDETAAGVPLHRFIYSLGIPQVGLTTAKLLSRKYRTLDA 714

Query: 580 F---------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           F         A+   +  A  + +  ++  +  +G ++A  I EF+    N+  V+ +L+
Sbjct: 715 FRDAAEEAAAAKAAASADAAASTEAPAMTDIDGIGPVVAATIGEFWSERANVNVVDDMLR 774

Query: 631 E---------------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                            S +      + +  +    +V TG +  + R +A + V   G 
Sbjct: 775 NGVVVSDDASPPDASDASDASNAAAASATGPLTGYAVVVTGAVPGMTREEAFDAVAAAGG 834

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
                +S KT +++VG+  G  K E A+  GV +++ E FL +L
Sbjct: 835 SPQKAVSGKTHVLVVGEGAGRRKAEAAEARGVAVIDAEAFLRVL 878


>gi|259501108|ref|ZP_05744010.1| DNA ligase [Lactobacillus iners DSM 13335]
 gi|302190444|ref|ZP_07266698.1| DNA ligase [Lactobacillus iners AB-1]
 gi|259167802|gb|EEW52297.1| DNA ligase [Lactobacillus iners DSM 13335]
          Length = 672

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 227/717 (31%), Positives = 379/717 (52%), Gaps = 69/717 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L    DP
Sbjct: 4   LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG     L KV H  P LS+  +++ ++L +F  RI    QK   + + + +E
Sbjct: 61  DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVRGE 
Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ K  F  LN E    G   +ANPRNAA+G LR+L+  ++T  R L+ +++      E 
Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTYIYTWVNPPET 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+ 
Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +++
Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+ 
Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRLQASLPYE 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   +V        K   A RC   + C AQ  E + HF SR A NI GLG +
Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454

Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
              QL       D        AD++ L      S  ++  +  F D S+ NL ++I   +
Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+E  +F LGI HVGA+ AR +A+ +        ++N I   +  D   L+++  +G 
Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAQKF-------HDLNTIRKCSIAD---LMQIDTIGQ 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658
            IA+++V++++      +V+ L+ ++  +      +G  +     +   + K +V TG L
Sbjct: 552 TIAESMVKYFEQQ----SVKELMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
               R    + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +
Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVI 664


>gi|306825169|ref|ZP_07458511.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432605|gb|EFM35579.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 652

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 218/685 (31%), Positives = 364/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V  A R
Sbjct: 76  LYSLQDAFSREELEAFDARV-----RKELPQPTYICELKIDGLSISLTYEKGILVVGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRTSFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+ +  LGF VN+ 
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EVSPSTRDSQEKVLKHLEQLGFVVNSK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A +   I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAESMDEIWNFIQEVGQERDNLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C  +++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDCQLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS---EDPAFSIRIPA 508
              A RC     C AQ +E L HF SRDA NI GLG   ++  F +   +D A   R+  
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAANLVKDVADIYRLNE 465

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D F L             + G  + S + LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 466 DDFLL-------------LEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +++ S +N AQ           D   +  +  +G +IAQ++  ++    +   ++  
Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFATEGSKILLDE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L+++ R +A+  +  LGA V+  +S+KT+
Sbjct: 562 LKEAGVNLDYKGQTVVADAVLSGLTVVLTGKLERLTRSEAKSKLESLGAKVTGSVSKKTN 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++ G + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646


>gi|256372325|ref|YP_003110149.1| DNA ligase, NAD-dependent [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008909|gb|ACU54476.1| DNA ligase, NAD-dependent [Acidimicrobium ferrooxidans DSM 10331]
          Length = 664

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 220/698 (31%), Positives = 351/698 (50%), Gaps = 54/698 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A   +++L   I    + YY    PI+ D E+D L     A+  A P+L     P+ P
Sbjct: 3   ESAAARVAALRSLIQRASEAYYVADDPIMSDDEFDGLVLELRALEAAHPEL---RSPDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G     S   V H  P LSL+ +++ ++L  ++ R  R      D ++FF L  KI
Sbjct: 60  TERVGAPPGSSFAPVRHRTPMLSLDNVFDADELDAWVERTRRGLGH--DPALFFEL--KI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ Y  G+   AA RGDG  GEDV+A    +  IPR L  +  P ++EVRGE+++
Sbjct: 116 DGLALSLTYVDGRLAQAATRGDGEVGEDVTANALVVDAIPRRLKGVTGPGLVEVRGELFL 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            ++ F ALN+ +     +P+ANPRNAA+G LR+ +P     R L+FF + L +       
Sbjct: 176 PRSAFRALNERV----ERPFANPRNAAAGSLRQKDPALTRDRGLSFFAYQLEEGPSF--D 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +E LQ +  +GF V            +      +   R  L YDIDG V KVD    +
Sbjct: 230 YHHEALQWLGEVGFQVEAHATPVG-LDELADKLAWLAEARDGLDYDIDGAVIKVDRLEDR 288

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG    +PRWMI++KF  ++  TRL+ I++ +G++G +TP A L+PV +GG+ ++ AT
Sbjct: 289 VRLGTTTHAPRWMIAYKFPAEERPTRLVGIEVSVGKSGKVTPFAVLDPVRVGGSTVSRAT 348

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I  L           D+RVGD V+V+RAGEVIP+VV  ++  R  DA P+ FP+
Sbjct: 349 LHNADQIARL-----------DVRVGDTVIVRRAGEVIPEVVRPVLELRPDDAVPWVFPT 397

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C + +VRD      +     RC     C  Q ++RL HF SRDA +I+GLG+Q+  
Sbjct: 398 TCPVCHTPLVRD------RGEVDWRCP-NRRCPEQLVQRLIHFASRDAMDIDGLGEQRAR 450

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  + +P D++ L      +   +  + G    S+  L   I   R+  L R
Sbjct: 451 QLVE----AGLVVVPPDLYRL------TDDDLARLPGVRHRSIERLRAGIEASRSRPLGR 500

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+L I +VG  +   +A    S         +           L RV  +G ++A ++
Sbjct: 501 VIFALAIDNVGQHVGMLVADVVGSLSGLRTVTED----------ELCRVEGIGPVVAASV 550

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           V F  +      ++ L +    +     +     +E    V TGT+  I R +    + +
Sbjct: 551 VAFRDSDLGREILDKLERAGVGASADRPRAAGGPLEGLSFVLTGTVPGIGRAELAALIEE 610

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            G  V   +S++T  ++ G +PGSKL++A+  G+ +++
Sbjct: 611 HGGQVRTSVSQRTSYVVAGASPGSKLDEARARGIPVID 648


>gi|332200505|gb|EGJ14577.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41317]
          Length = 648

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 15  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 71

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 72  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 126

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 127 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 182

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 183 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 240

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 241 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 300

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 301 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 349

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 350 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 404

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 405 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 457

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG+++++
Sbjct: 458 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 508

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N +Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 509 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 557

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 558 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 617

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 618 LVVVGADAGSKLQKAQELGIQVRDE 642


>gi|289168011|ref|YP_003446280.1| DNA ligase [Streptococcus mitis B6]
 gi|288907578|emb|CBJ22415.1| DNA ligase [Streptococcus mitis B6]
          Length = 652

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 215/680 (31%), Positives = 359/680 (52%), Gaps = 55/680 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V  A R
Sbjct: 76  LYSLQDAFSREELEAFDARV-----RKEVTHPTYICELKIDGLSISLTYEKGILVAGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+++  ++ +  IP +L   +   I VRGE Y+ +  F  +N      G   +A
Sbjct: 131 GDGSVGENITENLKRVKDIPLILPEELD--ITVRGECYMPRASFDQVNQARQENGEPEFA 188

Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+ +  LGF VN    
Sbjct: 189 NPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPKRI 246

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
                  I  +  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF  +
Sbjct: 247 LTENIDEIWDFIQEIGQKRENLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFPAE 306

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI             +
Sbjct: 307 EKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEK 355

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +       
Sbjct: 356 DIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDSDLLHFEDE------ 408

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
            A RC     C AQ +E L HF SRDA NI GLG   ++         FS  +  D+  +
Sbjct: 409 VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSVVEKL-------FSANLVKDVANI 460

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            R Q+     +E   G  + S + LY +I   +  S E+ +F LGIRHVG++ ++ L ++
Sbjct: 461 YRLQEEDFLLLE---GVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLLLQH 517

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +N AQ           D   +  +  +G +IA+++  ++    +   +   LKE  
Sbjct: 518 FHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFATEGSEILLRE-LKEAG 566

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
            ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD+++ G
Sbjct: 567 VNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTDLVVAG 626

Query: 692 DNPGSKLEKAQQLGVKIMNE 711
            + GSKL+KAQ+LG+++ +E
Sbjct: 627 ADAGSKLQKAQELGIEVRDE 646


>gi|227501728|ref|ZP_03931777.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725]
 gi|227077753|gb|EEI15716.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725]
          Length = 680

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 233/728 (32%), Positives = 375/728 (51%), Gaps = 81/728 (11%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E + L QE+  H + YY   +P I D+++DAL +R   +    P+LA    P+ P  +
Sbjct: 2   QREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLMDLEKQHPELAV---PDSPTQQ 57

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   N     + H    +SL+ +++  +++ ++ R           +  +  E KIDG 
Sbjct: 58  VGATPNAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKIDGL 107

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            I + Y  G+   AA RGDG  GE+++   R I  IP  L+      +PE+IE+RGEVY+
Sbjct: 108 SIDLVYRNGRLDTAATRGDGTVGEEITPNARVISDIPHELTGTDEYPVPELIEIRGEVYM 167

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
              DF  +N+E  A G+  +ANPRNAA+G LR  +P ++  R L    HGLG        
Sbjct: 168 RPEDFEEINEERAADGKARFANPRNAAAGGLRMKDPAEVKKRRLRMVCHGLGAREGFSPS 227

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q++  + +   G PV+   RQ ++   +   VSY+ E    R    +++DGLV KVD+ 
Sbjct: 228 SQHDAYKAIAAWGLPVSPYTRQVHSAAEVQEEVSYWAEH---RHDAIFEMDGLVVKVDDL 284

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A +EPV + G+ ++
Sbjct: 285 GSQRQLGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPFAIMEPVFVSGSTVS 344

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+  +K         R G  + +GD +++++AGE+IP+V+  +  +R      +S
Sbjct: 345 MATLHNQSEVK---------RKG--VLIGDTIIIRKAGEIIPEVLGPVREQRDGSEYEWS 393

Query: 430 FPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG- 487
           FP+ CP C +     L P K G   A  RC    +C AQ   RL++  SR   +IE LG 
Sbjct: 394 FPTQCPACGTT----LAPQKDGD--ADWRCPNTQSCPAQLSARLEYLASRKGLDIEALGE 447

Query: 488 KQQLDF----FFKSEDPAFSIR----IPADIFTLQRRQQTSTTKIENILGFGDVSVT--- 536
           K  +D         E   F +     + +D++T +R  +   +K E     G+V V    
Sbjct: 448 KGAMDLIENGILTDESELFELTEEKLLASDVYTAKRDTKDKRSKKE-----GNVKVNTAG 502

Query: 537 -NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL  ++ + ++    R + SL IRHVG   AR+LA  Y S       +  + A   +D 
Sbjct: 503 KNLLQNLEEVKDRDFWRVLVSLSIRHVGPIAARALAARYGS-------MEKLRAAKTED- 554

Query: 596 LSLIRVPLVGDIIAQAI-----VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
             L  V  VG +IA++      V++++      A   L  EV+      E      +E  
Sbjct: 555 --LAEVDGVGAVIAESFHAWFEVDWHRTIVEKWAEAGLAMEVAA-----EDRKEQTLEGL 607

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+L+   R  A+E +   G   +  +S+KT  ++ G N GSK +KA+ LGV I+N
Sbjct: 608 TIVVTGSLEDFTRDSAKEAIISRGGKATGSVSKKTSYLVAGANAGSKEDKARDLGVPILN 667

Query: 711 EEQFLFLL 718
           EEQF  LL
Sbjct: 668 EEQFHTLL 675


>gi|307709253|ref|ZP_07645711.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564]
 gi|307619836|gb|EFN98954.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564]
          Length = 648

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 223/688 (32%), Positives = 362/688 (52%), Gaps = 71/688 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 15  YYTSDNPSVSDSEYDRLYRELVELESAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 71

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V  A R
Sbjct: 72  LYSLQDAFSREELEAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGATR 126

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 127 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 182

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+ +  LGF VN  
Sbjct: 183 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 240

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I  +  E+   R +LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 241 RILAENIDEIWHFIQEVGEERDSLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 300

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 301 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 349

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 350 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDSGLLHFEDE---- 404

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 405 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 457

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG + ++
Sbjct: 458 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGNKASQ 508

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +++ S +N AQ           D   +  +  +G +IA+++  ++    +    E L
Sbjct: 509 LLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFATEGS----EIL 554

Query: 629 LKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           L+E+  +    +    + + N  L     V TG L++++R +A+  +  LGA V+  +S+
Sbjct: 555 LRELKEAGVNLDYKGQTVVANAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSK 614

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           KTD+++ G + GSKL+KAQ+LG+++ +E
Sbjct: 615 KTDLVVAGADAGSKLQKAQELGIEVRDE 642


>gi|19552465|ref|NP_600467.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC
           13032]
 gi|62390131|ref|YP_225533.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC
           13032]
 gi|81760918|sp|Q8NR20|DNLJ_CORGL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21324011|dbj|BAB98637.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325467|emb|CAF19947.1| DNA LIGASE [Corynebacterium glutamicum ATCC 13032]
          Length = 680

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 228/721 (31%), Positives = 365/721 (50%), Gaps = 72/721 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q R+  + L +++ YH D YY   +P I D+++DAL ++   +    P+LA    P+ P 
Sbjct: 7   QLRRTWNDLAEKVRYHRDRYYN-EQPEIPDADFDALFKQLQQLEEDHPELAV---PDSPT 62

Query: 76  NKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             +G  +    S   V H    LSL+ +++ ++LR ++ R           +  +  E K
Sbjct: 63  MVVGAPVAEQSSFDNVEHLERMLSLDNVFDEQELRDWLGRT---------PAKQYLTELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRG 189
           IDG  I + Y  G+   AA RGDG  GED++A  R I  IP  L       +P ++E+RG
Sbjct: 114 IDGLSIDLVYRNGQLERAATRGDGRVGEDITANARVIEDIPHQLQGTDEYPVPAVLEIRG 173

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EV+I+  DF  +N + IA G KP+ANPRNAA+G LR+ N  D+  R L    HG+G T  
Sbjct: 174 EVFITVEDFPEVNAQRIADGGKPFANPRNAAAGSLRQKNIEDVKKRRLRMISHGIGFTEG 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++    +   G P +           +V   +     R    +++DGLV KVD+
Sbjct: 234 FSPASQHDAYLALAAWGLPTSPYTEAVTDPEDVVKKVSYWADHRHDALHEMDGLVIKVDD 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV + G+ +
Sbjct: 294 IASQRALGSTSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVLVAGSTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+  +K         R G  + +GD V++++AGEVIP+V+  +V  R    + +
Sbjct: 354 SMATLHNQSEVK---------RKG--VLIGDTVVIRKAGEVIPEVLGPVVELRDGTEREY 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP C +R    L P     V   RC    +C  Q   RL +   R AF+IE LG+
Sbjct: 403 IFPTLCPECGTR----LAPAKADDV-DWRCPNMQSCPGQLSTRLTYLAGRGAFDIEALGE 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +  +   ++      +   + +F L      S+       G  + S   L D++ K +  
Sbjct: 458 KGAEDLIRT----GILLDESGLFDLTEDDLLSSNVYTTNAGKVNASGKKLLDNLQKSKQT 513

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL----- 603
            L R + +L IRHVG   AR+LA  Y S Q                  +LI  PL     
Sbjct: 514 DLWRVLVALSIRHVGPTAARALAGRYHSIQ------------------ALIDAPLEELSE 555

Query: 604 ---VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSE-IENKKLVFTGT 657
              VG IIAQ+  ++++   +   V+   K  +  +   E+   V+ + +E   +V TG 
Sbjct: 556 TDGVGTIIAQSFKDWFEVDWHKAIVD---KWAAAGVTMEEEVGEVAEQTLEGLTIVVTGG 612

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+   R   +E +   G   S  +S+KTD +++G+N GSK  KA++LG++I++E  F+ L
Sbjct: 613 LEGFTRDSVKEAIISRGGKASGSVSKKTDYVVIGENAGSKATKAEELGLRILDEAGFVRL 672

Query: 718 L 718
           L
Sbjct: 673 L 673


>gi|168486469|ref|ZP_02710977.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00]
 gi|183570508|gb|EDT91036.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00]
          Length = 652

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG+++++
Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N +Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646


>gi|284042834|ref|YP_003393174.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
 gi|283947055|gb|ADB49799.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
          Length = 684

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 228/707 (32%), Positives = 369/707 (52%), Gaps = 60/707 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +E++YH   YY    P I D  YDAL     A+  A P+L     P+ P  ++GG + 
Sbjct: 13  LRRELAYHGHRYYDLDDPEIGDDAYDALLDELRALEAAHPELL---TPDSPTQRVGGAVV 69

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFTLEPKIDGTMITI 141
             L KV H    LSL    + ++L  ++ R+     ++  +D    + +EPK+DG  +++
Sbjct: 70  SELRKVRHRRRMLSLANARSEQELLAWVERMRAHLAREGIEDPRFEYVVEPKVDGLAMSL 129

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            YE G  +    RGDG  GEDV+  IR I  IP+ +    P  +EVRGEVY+S  DF AL
Sbjct: 130 HYENGTLIRGVTRGDGEIGEDVTHNIRTIEQIPQQID-GAPAWLEVRGEVYMSLADFEAL 188

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           N      GR  + NPRN+A+G +R+L+      R L+ + +G+G+T  I     +E LQ 
Sbjct: 189 NLRRAEEGRSTFMNPRNSAAGTIRQLDSRLAAERPLSMWCYGIGETEGISFSTHWESLQW 248

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +R  GFPVN+ +R+  T   +V+     +  R +L ++IDG+V KVD+  LQ++LG   R
Sbjct: 249 LRAHGFPVNDEIRRIRTAEKVVARCERWQERRGSLDFEIDGVVVKVDDVELQRRLGVVGR 308

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
            PRW I+ KF    A T+L D+   +G+ G L P A LEPV++GG  +  ATLHNE+ + 
Sbjct: 309 DPRWAIAWKFPPTTAVTQLHDVMWNVGKFGTLHPFAVLEPVHVGGVTVKLATLHNEEDL- 367

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQPFSFPSFCPICQ 438
                       +D+R GD V+V RAG+VIP+V+     V ER   A     P+ CP+C 
Sbjct: 368 ----------ARKDVRPGDDVIVLRAGDVIPQVLSPAPHVAERSDRAPVPRPPARCPVCD 417

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           +  V+     T       +C     C  ++ + L+H+VSR A +++G+G++Q+    +  
Sbjct: 418 TPTVKGEGVFT-------KCP-NRDCPGRRWQLLQHYVSRGAMDVDGIGEKQVSVLMEH- 468

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                +R P D + L      S  ++  +  FG+VS  N  ++I   +     R +F LG
Sbjct: 469 ---GLLRTPGDYYRL------SAEQLMQLDRFGEVSARNAVEAIAASKERPFGRVLFGLG 519

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  VG+   RSLA+ +       + I+ + A + ++   +   P +G I+ + I +  ++
Sbjct: 520 IEGVGSVTGRSLAQRF-------RTIDALTAASAEE---IAATPGIGPIVGRLIHDQLRD 569

Query: 619 PRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
                 ++ L      ++E  P  G         + +K +V TGTL  + R +A E +  
Sbjct: 570 EHLRAVIDDLRAHGVRMEEDGPPPG------EGPLADKAIVLTGTLPTLTREEATERILA 623

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  V++ +SR+TD ++ G+  G+KLEKA++L V +++E+    LL+
Sbjct: 624 AGGRVTSSVSRRTDYVVAGERAGTKLEKAERLRVPVLDEDGLEALLR 670


>gi|168483195|ref|ZP_02708147.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00]
 gi|168492012|ref|ZP_02716155.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04]
 gi|221231854|ref|YP_002511006.1| DNA ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225854613|ref|YP_002736125.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae JJA]
 gi|254781427|sp|B8ZPV9|DNLJ_STRPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781431|sp|C1CEA4|DNLJ_STRZJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|172043461|gb|EDT51507.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00]
 gi|183573785|gb|EDT94313.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04]
 gi|220674314|emb|CAR68857.1| DNA ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225722247|gb|ACO18100.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae JJA]
 gi|332201605|gb|EGJ15675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47368]
          Length = 652

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVADSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG+++++
Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N +Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646


>gi|183603490|ref|ZP_02717204.2| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06]
 gi|183576581|gb|EDT97109.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06]
          Length = 648

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 15  YYTSDNPSVADSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 71

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 72  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 126

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 127 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 182

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 183 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 240

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 241 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 300

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 301 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 349

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 350 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 404

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 405 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 457

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG+++++
Sbjct: 458 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 508

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N +Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 509 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 557

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 558 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 617

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 618 LVVVGADAGSKLQKAQELGIQVRDE 642


>gi|302336117|ref|YP_003801324.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084]
 gi|301319957|gb|ADK68444.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084]
          Length = 747

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 236/712 (33%), Positives = 358/712 (50%), Gaps = 59/712 (8%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P + D+E+D L     A+  A P+L     P     +IGG ++     V H+ 
Sbjct: 61  AYYALDDPEMTDAEFDRLLVELQALESAHPELV---SPESYTQRIGGYVSDQFEPVRHAQ 117

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
              S++   ++++L +++ R         +  + +T E KIDG  I + Y  G  V AA 
Sbjct: 118 RMYSIDDAMSLDELDEWLARTDGALGATAERPVAYTCELKIDGLGIALTYRDGTLVRAAT 177

Query: 154 RGDGHSGEDVSACIRAIPTIPRVL-SLNIPEI--------IEVRGEVYISKNDFLALNDE 204
           RGDG +GE+V+A    I  IPR L S  +  I        IEVRGEVY+ K+ F+ LN++
Sbjct: 178 RGDGTTGENVTANALTIKDIPRALASAGMGRIAGGGFGVSIEVRGEVYMPKHSFVRLNEQ 237

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
             A GR+P+ANPRNAA+G LR+ + +    R L  F++ +   S +    Q++ L  ++ 
Sbjct: 238 NDAAGRQPFANPRNAAAGSLRQKDSSVTKARDLETFIYAVADESPLAIDTQHDFLSWLKD 297

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
            GF VN   R+  +   +  +  +  + R  L YDIDG+V KVD F+ Q  LG  AR+PR
Sbjct: 298 CGFSVNPHARRVESSREVRRFCVDALAYRGELDYDIDGVVVKVDSFAGQAALGFTARAPR 357

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W ++ KF  ++  T L  I +Q+GRTG+LTPVA  +PV + G+ I  ATLHN D ++   
Sbjct: 358 WSMAFKFPPEERRTVLRQIRVQVGRTGVLTPVAEFDPVVVAGSTIARATLHNIDEVR--- 414

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN---ERHPDAQP-FSFPSFCPICQS 439
                    +D+R GD ++V +AG+VIP+VV  +         +A+P +  P  CP C S
Sbjct: 415 --------RKDVREGDTIVVHKAGDVIPEVVGPVTEGPLAAEHEARPLWDMPETCPSCGS 466

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK--- 496
            VVR+     G++  A RC   + C AQ  ERL H+ SR+A +I+GLG + +    +   
Sbjct: 467 PVVRE----EGEV--AWRCV-SIDCPAQASERLIHWGSRNAMDIDGLGDEIVGRMVEQGI 519

Query: 497 -SEDPAFSIRIPADIFT---LQRRQQTSTTKIENILGF--GDVSVTNLYDSINKRRNISL 550
            ++   +  R+  D        R  +T+    E   G   G      +   +   +   L
Sbjct: 520 LTDVADYYDRLDVDTLAAVDTGRVYETAGKGHEEGDGIVVGPTIAGKIMGQVEASKRAGL 579

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F LGIRHVGA +A  LA  + S Q  A       A   +D   + +V  +G  IAQ
Sbjct: 580 GRVLFGLGIRHVGASVANLLADRFGSMQALA-------AATEED---MAQVDGIGPKIAQ 629

Query: 611 AIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++  F+    N+  VE L    +       G   K   + ++    V TGTL+K  R  A
Sbjct: 630 SVRGFFSVEGNVAVVERLRAAGVSLEQEGFGEGPKRPQT-LDGLTFVLTGTLEKYSRGDA 688

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              +  LGA VS  +S+KT  ++ G   GSKL KAQ LGV +++E     +L
Sbjct: 689 GSRLKALGAKVSGSVSKKTSFVVAGAAAGSKLAKAQALGVTVLDETALDHIL 740


>gi|322376748|ref|ZP_08051241.1| DNA ligase, NAD-dependent [Streptococcus sp. M334]
 gi|321282555|gb|EFX59562.1| DNA ligase, NAD-dependent [Streptococcus sp. M334]
          Length = 652

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 363/685 (52%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V  A R
Sbjct: 76  LYSLQDAFSREELEAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ ++ F  +N      G   
Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRSSFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I  +  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWDFIQEVGQERDNLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRISE-EKLDIPTNCPSCDSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F +      ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFATN----LVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            L         K E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RL---------KEEDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +++ S +N AQ           D   +  +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++ G + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646


>gi|50364975|ref|YP_053400.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma
           florum L1]
 gi|81391966|sp|Q6F1V7|DNLJ_MESFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50363531|gb|AAT75516.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma
           florum L1]
          Length = 666

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 229/717 (31%), Positives = 381/717 (53%), Gaps = 62/717 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQA K ++ L  +++     YY    P + D+EYD    +   + + FP+L  S+  
Sbjct: 1   MTKEQASKLINDLRLKLNEWAKEYYVLDNPSVDDAEYDKTIHQLLDLENQFPELITSDSI 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+GG ++    K TH  P LSL  I++ ++   F  ++ +    +++    +T E
Sbjct: 61  T---QKVGGIVSDKFEKHTHKYPMLSLGDIFSWDEFINFNKQVAKVTGTENNE---YTAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ Y+ G       RGDG  GE+V+  ++ I +IP  LS+   + IE+RGEV
Sbjct: 115 LKIDGLSISLIYKDGVLQKGVTRGDGKVGENVTTNVKTIKSIP--LSIPSKDEIEIRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-----DITRYLNFFVHGLGKT 246
           ++ K +F  +N+E +  G + +ANPRNAA+G LR+L+       ++  YL ++ +     
Sbjct: 173 FLGKKEFAKINEERLLNGDQLFANPRNAAAGTLRQLDSKIVAERNLDAYLYYYFNENNPI 232

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLV 303
           +      Q++ + +++ LG  +N   +   T   +   + YY E    R+ L Y+IDG+V
Sbjct: 233 N-----TQFDSINQIKNLGLKINKETKICKTLEEVKLYIEYYTEK---RNELDYEIDGIV 284

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           +K+++  LQ+++G  A++P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV I
Sbjct: 285 FKLNDKKLQEEVGYTAKTPKWAIAYKFPAEVKQTKLLDIFPTVGRTGKITYNAKLEPVQI 344

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A+L+N +YI             +D+R+   V VK+AG++IP+V+  I +E+  
Sbjct: 345 AGTTVSAASLNNAEYIM-----------AKDLRINSIVKVKKAGDIIPEVISAIKDEKFD 393

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               +     CP C      +L  KT   V    C     C AQ L  L+HF SR A NI
Sbjct: 394 LLPIWEKDVQCPAC-----NELLEKTSTEVDQF-CV-NFNCPAQILRSLEHFASRGAANI 446

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GLG Q +   F+ +     I   ADIF ++  ++     I N   FG+ S  NL  SI 
Sbjct: 447 VGLGGQTIKKLFEEK----LITNIADIFKVEEHKEN----IINFEKFGEKSFENLIASIK 498

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + +N S E+ +F LGIRHVG++ A +LA+ Y +  N            N  +  L  +  
Sbjct: 499 ESKNNSFEKTLFGLGIRHVGSKTALTLAQIYKNIDNLK----------NATYEELSSIDS 548

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           VG+++A +IV++++   N+  +  L   +V+       KN  S I  K  V TGTL + +
Sbjct: 549 VGEVLAMSIVDWFKIESNLQLINELKSFDVNFEYLGQAKNTESTISEKSFVITGTLSESR 608

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +         G V+ ++ S+KTD ++ G+N GSKL KA++L VK++NEE+F  +L+
Sbjct: 609 DYFKDIIELNNGKVIGSV-SKKTDYVLAGENAGSKLTKAEELNVKVINEEEFFAILK 664


>gi|331266328|ref|YP_004325958.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5]
 gi|326683000|emb|CBZ00617.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5]
          Length = 652

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V  A R
Sbjct: 76  LYSLQDAFSREELEAFDARV-----RKELPQPTYICELKIDGLSISLTYEKGILVVGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I  +  E++  R  LPYDIDG+V KV+  + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWDFIQEVEQERDNLPYDIDGVVIKVNNLAGQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S+++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRISE-EKLDIPTNCPSCDSQLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F +      ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFATN----LVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            L         K E+ L   G  + S + LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RL---------KEEDFLLLEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +++ S +N AQ           D   +  +  +G +IAQ++  ++    +   ++  
Sbjct: 513 LLLQHFHSIKNLAQA----------DPEEVASIESLGSVIAQSLQTYFATEGSKILLDE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L+++ R +A+  +  LGA V+  +S+KT+
Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKVTGSVSKKTN 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++ G + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646


>gi|149012887|ref|ZP_01833800.1| DNA ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182684133|ref|YP_001835880.1| DNA ligase [Streptococcus pneumoniae CGSP14]
 gi|254781428|sp|B2IPZ1|DNLJ_STRPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147763176|gb|EDK70116.1| DNA ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182629467|gb|ACB90415.1| DNA ligase [Streptococcus pneumoniae CGSP14]
 gi|301801994|emb|CBW34723.1| DNA ligase [Streptococcus pneumoniae INV200]
          Length = 652

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG+++++
Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N +Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646


>gi|222823679|ref|YP_002575253.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100]
 gi|254781279|sp|B9KG17|DNLJ_CAMLR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222538901|gb|ACM64002.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100]
          Length = 651

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 227/691 (32%), Positives = 355/691 (51%), Gaps = 70/691 (10%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY+  +P+  D EYD L R        + D    + P      I   +     K+THS 
Sbjct: 19  AYYEDDEPLASDEEYDKLIRELKEFEALYKDKISKDSPT---QNIAPTIQSEFHKITHSA 75

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
                 K+W++ED+  F     R W K+      F +EPK DG  + + YE GK +  A 
Sbjct: 76  ------KMWSMEDV--FDEAELRAWAKRAKCEFDFFIEPKFDGASLNLTYENGKLISGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  ++ I  IP+++     + IE+RGEV I K DF  +N++    G   +
Sbjct: 128 RGDGEIGEDITLNVKEISNIPKIIPYK--DKIEIRGEVVILKEDFEKINEKRAKDGLSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRN ASG LR+L+ T IT  R L F+  G+G+ S  F+K   E+++ +R LGF  ++ 
Sbjct: 186 ANPRNGASGSLRQLD-TSITKERNLKFYPWGVGENSLKFSK-HSEVMEFIRSLGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           V    T   ++  Y+E+   R   P  +DG+V +VD+    ++LG   + P++M + KF 
Sbjct: 244 VYCVKTLDEVLEKYHELLEKRDQKPMMMDGMVVRVDDLKKCQELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +T LL +++Q+GR+G++TPVA LEPV + G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTTLLGVNLQVGRSGVITPVAILEPVELDGVVVKSATLHNFDEITRL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
              + +GD V V R+G+VIPK+  +    R       + PS CP C S ++ +       
Sbjct: 355 --GVMIGDSVSVIRSGDVIPKITKVFTQRRDGLESKITKPSLCPECLSELLDE------- 405

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  +C   L C A+ +  + +FVS+   NI+GLG+  ++  FK       I     IF
Sbjct: 406 -GAFLKCQ-NLDCKARLVNSIIYFVSKKCLNIDGLGENIVELLFKEG----KITNIESIF 459

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+           N+ GF +  + NL ++I   +  SL RFI +LGI H+G   A+ LA
Sbjct: 460 FLKYDD------FLNLEGFKEKKINNLLNAIENAKKCSLSRFITALGIEHIGEVAAKKLA 513

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF----YQNPRNICAVEA 627
           + +  +  F Q            + + + +   G+ +A+++ EF    +Q  ++   +  
Sbjct: 514 QSF-GFDWFLQ-----------SYEAYVNLEGFGEQMAKSLQEFTKINHQRIKHFYEILH 561

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L  E      + E  ++  I NK  V TGTL K + H  +E +   GA VS+ +S+KTD 
Sbjct: 562 LEDE------KKELALNENISNKTFVITGTLSKSRDH-FKELIESFGAKVSSSVSKKTDF 614

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++ G   GSKLEKAQ LGVK +NE++F  LL
Sbjct: 615 VLYGSEAGSKLEKAQSLGVKCINEDEFNALL 645


>gi|262066346|ref|ZP_06025958.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693]
 gi|291379910|gb|EFE87428.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693]
          Length = 696

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 226/707 (31%), Positives = 381/707 (53%), Gaps = 52/707 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L++++  + D YY  ++ +I D E+D L +  +++   +P+   +  P      +G  + 
Sbjct: 34  LKEDLDKYRDSYYNDNESLISDYEFDILLKELESLEEKYPEYKEASSPTAS---VGASLK 90

Query: 84  LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
            + FK V H+ P LSL   +NI ++  FI RI +   K+++  + + LE K+DG  I++ 
Sbjct: 91  ENKFKKVEHAHPMLSLANSYNIGEVVDFIERIKKRISKEEE--LKYCLEVKLDGLSISLT 148

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           Y +GK V A  RGDG  GEDV+  I  I ++ + L   I   IE+RGE+ +    F  LN
Sbjct: 149 YVQGKLVRAVTRGDGFIGEDVTENILQIASVVKTLPQAID--IEIRGEIVLPLASFEKLN 206

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           +E +  G + +ANPRNAASG LR+L+P  +  R L+ + + L +  ++  K   E ++ +
Sbjct: 207 NERLEKGEELFANPRNAASGTLRQLDPKIVKERALDAYFYFLVEADKLGLKSHSESMKFL 266

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             +G               I    +  +  R  LPY+ DGLV KVDE +L  ++G  +++
Sbjct: 267 ESMGIKTTGIFELLENSKDIEQRIDYWEKERENLPYETDGLVIKVDEINLWDEIGYTSKT 326

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF   Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN   I+ 
Sbjct: 327 PRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNISEIQ- 385

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+C  ++
Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKIIEEPINCPVCDHKL 435

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+        +   +C     C A+    +++FVSRDA NI GLG + ++ F    D  
Sbjct: 436 EREEG------LVDIKCVNE-ECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
           + I+   DI+ L    +T    +ENI   G  S+ NL +SI + +N   ++ I++LGI  
Sbjct: 486 Y-IKTVVDIYDL----KTHREDLENIDKMGKRSIENLLNSIEESKNREYDKVIYALGIPF 540

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   ++ LAK        ++ I+ +++   ++   L  +  +G+I A  I+ F++  + 
Sbjct: 541 IGKVASKVLAKA-------SKNIDKLMSMTFEE---LTAIEGIGEIAANEIIAFFKKEKT 590

Query: 622 ICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              V AL +     E++ S  + E N++     K  +FTGTL+   R + +E + +LG  
Sbjct: 591 QKLVAALKEKGLKFEITESETKVE-NLNPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGK 649

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
             + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 650 NLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|306835907|ref|ZP_07468900.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726]
 gi|304568181|gb|EFM43753.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726]
          Length = 689

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 233/728 (32%), Positives = 373/728 (51%), Gaps = 81/728 (11%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E + L QE+  H + YY   +P I D+++DAL +R   +    P+LA    P+ P  +
Sbjct: 11  QREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLMDLEKQHPELAV---PDSPTQQ 66

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   N     + H    +SL+ +++  +++ ++ R           +  +  E KIDG 
Sbjct: 67  VGATPNAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            I + Y  G+   AA RGDG  GE+++A  R I  IP  L+      +PE+IE+RGEVY+
Sbjct: 117 SIDLVYRNGRLDTAATRGDGTVGEEITANARVISDIPHELTGTDEYPVPELIEIRGEVYM 176

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
              DF  +N+E  + G+  +ANPRNAA+G LR  +P ++  R L    HGLG        
Sbjct: 177 RPEDFEEINEERASDGKARFANPRNAAAGGLRMKDPAEVKKRRLRMVCHGLGAREGFSPS 236

Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q++  + +   G PV+     V  A      VSY+ E    R    +++DGLV KVD+ 
Sbjct: 237 SQHDAYKAIAAWGLPVSPYTTQVHSAAEVQKEVSYWAEH---RHDAIFEMDGLVVKVDDL 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A +EPV + G+ ++
Sbjct: 294 GSQRQLGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPFAIMEPVFVSGSTVS 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+  +K         R G  + +GD +++++AGE+IP+V+  +  +R      +S
Sbjct: 354 MATLHNQSEVK---------RKG--VLIGDTIIIRKAGEIIPEVLGPVREQRDGSEYEWS 402

Query: 430 FPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG- 487
           FP+ CP C +     L P K G   A  RC    +C AQ   RL++  SR   +IE LG 
Sbjct: 403 FPTQCPACGTT----LAPQKDGD--ADWRCPNTQSCPAQLSARLEYLASRKGLDIEALGE 456

Query: 488 KQQLDF----FFKSEDPAFSIR----IPADIFTLQRRQQTSTTKIENILGFGDVSVT--- 536
           K  +D         E   F +     + +D++T +R  +   +K E     G+V V    
Sbjct: 457 KGAMDLIENGILTDESELFELTEEKLLASDVYTAKRDTKDKRSKKE-----GNVKVNTAG 511

Query: 537 -NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL  ++ + ++    R + SL IRHVG   AR+LA  Y S       +  + A   +D 
Sbjct: 512 KNLLQNLEEVKDRDFWRVLVSLSIRHVGPIAARALAARYGS-------MEKLRAAKTED- 563

Query: 596 LSLIRVPLVGDIIAQAI-----VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
             L  V  VG +IA++      V++++      A   L  EV+      E      +E  
Sbjct: 564 --LAEVDGVGAVIAESFHAWFEVDWHRTIVEKWAEAGLAMEVAA-----EDRKEQTLEGL 616

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+L+   R  A+E +   G   +  +S+KT  ++ G N GSK +KA+ LGV I+N
Sbjct: 617 TIVVTGSLEDFTRDSAKEAIISRGGKATGSVSKKTSYLVAGANAGSKEDKARDLGVPILN 676

Query: 711 EEQFLFLL 718
           EEQF  LL
Sbjct: 677 EEQFHTLL 684


>gi|255038855|ref|YP_003089476.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053]
 gi|254951611|gb|ACT96311.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053]
          Length = 695

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 230/736 (31%), Positives = 377/736 (51%), Gaps = 72/736 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQ  +ELS   +++ Y++D YYQ S   I D E+D L +   A+   +P   R +D 
Sbjct: 1   MNPEQRIQELS---EKLHYYNDRYYQDSVSEISDYEFDQLLKELQALESEYPQF-RQDD- 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++GG +  S   V H  P LSL+  +N ++LR F  R+ R     D  +  +  E
Sbjct: 56  -SPTQRVGGTVTKSFNAVYHRYPMLSLDNTYNEDELRSFDDRVRRGL---DGEAYEYICE 111

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
            K DG  ++  YE G  V    RGDG  G++++  ++ I ++P RV +  IP + E+RGE
Sbjct: 112 LKFDGISLSFTYENGVLVRGVTRGDGTRGDEITNNVKTIRSLPLRVKADGIPPVFEIRGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249
            ++  + F  LN+EM  +G   YANPRNAASG  +  +  +  R  L+ +++    +   
Sbjct: 172 GFMPISSFQKLNEEMETLGENQYANPRNAASGSFKLQDSAEAARRGLDSYIYSF-LSDNA 230

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           F K   E L  ++  GF V+ G ++ +T   +++Y +E +  R+ LP   DG+V K++ F
Sbjct: 231 FFKSHEESLLALKSWGFNVSPGWKKVSTIDEVIAYIHEWEEKRAHLPLATDGIVIKINSF 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL----------- 358
             Q++LG  A+SPRW IS+K+  +     L  +  Q+GRTG +TPVA L           
Sbjct: 291 EQQRELGFTAKSPRWAISYKYKAENKPAVLRMVTYQVGRTGAVTPVANLCDLSERALPYN 350

Query: 359 --EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
             + V++ G  +  ATLHN + ++ L            +R+ D V V+++GE+IPK+  +
Sbjct: 351 QVKGVHLSGTRVKRATLHNANELERL-----------GVRLNDTVFVEKSGEIIPKITGV 399

Query: 417 IVNERHP-DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            V++R   + +P  FP+ CP C   + R+     G++  A  C     C  Q   R++HF
Sbjct: 400 DVSQRENYETEPVIFPTHCPECGHELQRN----EGEV--AFFCPNDSHCPPQLKGRIEHF 453

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ---------QTSTTKIEN 526
           + R A NIE LG+ +++  F  +     +R PAD++ L   +            T K++ 
Sbjct: 454 IHRKAMNIESLGEGKIELLFDLD----LVRTPADLYDLNHDKLLGLEKNLLNEETGKLKK 509

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           I  F + +V N+   I   R +  +  +F+LGIR VG  +A  LA Y+ S +        
Sbjct: 510 I-SFREKTVENILKGIEVSRTVPFKNVLFALGIRFVGQTVAEKLAAYFKSMR-------- 560

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
             A     +  L  VP +G  IA +I  F+  P N   VE  L+     +   EK V  E
Sbjct: 561 --ALRAATYEQLTAVPEIGGRIALSIESFFSVPENQMLVER-LERAGLQMESDEKPVEIE 617

Query: 647 ---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702
              ++ K  V +G  +  +R + +E +   G  V + +S K + ++ G N G SKLEKA+
Sbjct: 618 SDLLDGKTFVISGVFENFERDELKEKIEANGGKVLSGVSGKLNYLLAGANMGPSKLEKAR 677

Query: 703 QLGVKIMNEEQFLFLL 718
           +LGV I++EE+FL ++
Sbjct: 678 KLGVTIISEEEFLAMI 693


>gi|332299534|ref|YP_004441455.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176597|gb|AEE12287.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707]
          Length = 679

 Score =  340 bits (872), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 218/718 (30%), Positives = 366/718 (50%), Gaps = 68/718 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+  L   I  H+  YY  + P I D++YDAL +R   +    P+LA   DP  P  ++G
Sbjct: 9   EIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELA---DPTSPSLRVG 65

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            + N +  +V H  P LSL   +N +++ +   R        D   + +  E K DG+ I
Sbjct: 66  RDRNDAFVQVAHERPMLSLSNTYNYDEIAEICERTDTLLATDD---VPWVAEMKYDGSSI 122

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--LNIPEI----IEVRGEVYI 193
           ++ YE+G  V A  RGDG  G+DV+  +R I ++P  L      P+     IEVRGEV +
Sbjct: 123 SLIYEEGVLVRAVTRGDGTLGDDVTVNVRTIQSVPLRLRPVAGHPDYTMGRIEVRGEVLL 182

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEI 249
              +F  LN E  A G  P+ANPRNAA+G L+ LN   + +     + ++++ L   + +
Sbjct: 183 PFKEFERLNGERTAEGEAPFANPRNAAAGTLKTLNSRVVAQRRLLCICYYLYALDDETRL 242

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                YE ++ +  +GF       +++    +  Y +E    R  LPY  DG+V KVD  
Sbjct: 243 -PDSYYERMKLLEEMGFNTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGIVLKVDSL 301

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ LG  A+SPRW  ++K+  + A   LL +D Q+GR+G++TPVA +EPV I G ++ 
Sbjct: 302 TQQRTLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGVVTPVANVEPVLISGTVVR 361

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNE++IK L           D+   D V +++ GE+IPK+  +  + R P+++P  
Sbjct: 362 RATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVETSLRRPESEPVR 410

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C +  ++ ++   G     + C    AC  Q + R++H+ +R A +I  +G +
Sbjct: 411 LPELCPACGA-PLQQIDGSVG-----YYCVNSYACPPQIMGRIEHYCTRRAADI-NVGPE 463

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D  F        I    D++ L      + + +  +  F + S+ NL  SI + ++  
Sbjct: 464 TIDSLFDRH----LIENIDDLYKL------TASDLAQLPNFKEKSINNLLASIEQSKSRP 513

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ +GIR+VG   A++LA+++ S    AQ  +            L  +P VG  IA
Sbjct: 514 FARLLYGIGIRYVGEGTAKTLARHFQSIDRLAQATD----------YELQALPDVGPKIA 563

Query: 610 QAIVEFYQNPRNI--------CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           + +V F+   RN         C V  +L+E S       +  S+ +E +++V +G+  + 
Sbjct: 564 EQVVYFFSLERNQQLIAELQRCGV--ILEERSEETTDAPQ--SNLLEGERIVISGSFTQH 619

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            R + ++ + Q G V    +S +T  +++G + G SK  KA+QLG+ ++ EE+FL  L
Sbjct: 620 SRDEYKQLIEQHGGVNVGSISGRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLARL 677


>gi|260904918|ref|ZP_05913240.1| DNA ligase, NAD-dependent [Brevibacterium linens BL2]
          Length = 729

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 223/746 (29%), Positives = 374/746 (50%), Gaps = 75/746 (10%)

Query: 12  LSIEQARKEL-SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           LS   AR +  + L ++I      YY+   P++ D+EYD L  R + +   FP+L     
Sbjct: 16  LSDATARAQAHADLVEKIEEQRAAYYKDDSPLVADAEYDDLVHRLEDLEEKFPELVTD-- 73

Query: 71  PNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            + P   +GG ++ S F  V H     SL+ +++ E+LR +  R+    +     +  F 
Sbjct: 74  -SSPTQTVGGNVDTSTFDPVEHIGRMYSLDNVFDFEELRGWYDRV----RAATSATSKFL 128

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVR 188
            E KIDG  + + Y  G+ V AA RGDG  GED++A +R I  IP  L  + P   +E+R
Sbjct: 129 CELKIDGLAVNLLYRNGELVRAATRGDGRIGEDITANVRTISDIPDHLDTDYPPAEVEIR 188

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--- 244
           GEV+     F  LN  ++  G+ P+ANPRN+A+G LR+ +P     R L+  VHG+    
Sbjct: 189 GEVFFPLEKFTELNAALVEEGKAPFANPRNSAAGSLRQKDPAVTAVRPLHMLVHGIAVWT 248

Query: 245 --KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDI 299
               S      Q E+ ++ R  G P++   +   T   I   ++YY E    R  + +++
Sbjct: 249 PADDSHPEPAHQSEVYEQFRSWGLPISEYFKVLETVDEIEEFITYYGEH---RHDVTHEL 305

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V K+D+ ++Q+ LG  +R+PRW  + K+  ++ +T+LLDI +Q+GRTG +TP A +E
Sbjct: 306 DGIVIKIDDIAVQETLGYTSRAPRWATAFKYPPEEVTTKLLDIQVQVGRTGRVTPFAVME 365

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+ +  ATLHN           +V R G  + +GD V +++AG+VIP+V+  +V 
Sbjct: 366 PVTVAGSTVERATLHN---------GYEVKRKG--VLIGDTVTLRKAGDVIPEVLGPVVA 414

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R      F  P+ CP C + +         K     RC    +C AQ   R+ +  SR 
Sbjct: 415 QRDGSEYEFVMPTHCPSCGTELGEQKAGDKDK-----RCPNARSCPAQLANRIFYLASRA 469

Query: 480 AFNIEGLGKQQLDFFFKSEDP--------AFSIRIPAD------IFTLQRRQQTSTTKIE 525
           AF+IE LG++         +P        AF   + A+      I+  ++ +   T + E
Sbjct: 470 AFDIEALGEEAALALTAPAEPESPPLTSEAFLFDLTAEDLAEVKIWRNKKVKGVETGERE 529

Query: 526 NILGF-----------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
            +  F              +   L+D ++K ++  L R + +L IRHVG   AR+LA ++
Sbjct: 530 LVPYFYTRPTAKKPSAPSANTKKLFDELDKAKDQDLWRVLVALSIRHVGPTAARTLAAHF 589

Query: 575 LSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
            + +   A E+  + A +            +G  IA +I +++    ++  VEA  +   
Sbjct: 590 RTLEAIRAAELEELSAVDG-----------IGSTIAASIRDWFAVDWHVEIVEAWAEAGV 638

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L    R   +E +   G   ++ +S+KTD ++ G+N
Sbjct: 639 RMEDEEQETGEQTLEGLTIVATGSLSTFTRDGIKEAILGAGGKAASSVSKKTDYVVAGEN 698

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSKLEKA+ LGV++++E+ F  LL+
Sbjct: 699 AGSKLEKAESLGVRVLDEDTFRILLE 724


>gi|296393986|ref|YP_003658870.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985]
 gi|296181133|gb|ADG98039.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985]
          Length = 690

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 230/708 (32%), Positives = 356/708 (50%), Gaps = 50/708 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L  EI  H   YY    P + D+++D L R    +    P+LA ++ P   +   G   
Sbjct: 18  ALADEIREHQFRYYVLDSPTVTDAQFDVLLRELQELEEEHPELASADSPTKLVGGAG--F 75

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                +V H  P LSL+ +++ E L  +  R         + +I F  E KIDG  +++ 
Sbjct: 76  TTDFAEVGHIEPMLSLDNVFDEEGLLAWAQRT----SNAAERAIRFECELKIDGLGVSLV 131

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEVYISKNDF 198
           YE G+   AA RGDG +GEDV+  +R I  +P  L L      PE++EVRGEV+    DF
Sbjct: 132 YEHGRLARAATRGDGRTGEDVTLNVRTIGDVPHELRLAPGEAPPELLEVRGEVFFRLKDF 191

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
            ALN  ++A G+ P+ANPRN+A+G LR+ NP     R L    H  G TS      +   
Sbjct: 192 EALNASLVAEGKPPFANPRNSAAGSLRQKNPAVTAKRNLTMLCHSFGATSSWKPATRSAA 251

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            +K+R  G PV+      +T   ++ +     + R+ + Y+IDGLV KV+E  L  QLG 
Sbjct: 252 YEKLREWGLPVSEYNTTLDTPEAVLEHIRAWGNRRAEIAYEIDGLVVKVEEMDLYGQLGH 311

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW I++K+  ++  T+L DI + +GRTG +TP A ++PV + G+ ++ ATLHN  
Sbjct: 312 TSRAPRWAIAYKYPPQEVQTKLRDIRVNVGRTGRVTPFAFMDPVLVAGSTVSLATLHN-- 369

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
                  + +V R G  + +GD V++++AG+VIP+V+  +   R    + F  P  CP C
Sbjct: 370 -------ASEVERKG--VLIGDTVVLRKAGDVIPEVLGPVAALRDGTERQFVMPDVCPEC 420

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            ++    L P     V   RC     C AQ  ER+ H   R AF+IE LG +      K 
Sbjct: 421 GTK----LAPAKESDVDI-RCPNARTCPAQLRERVFHVAGRGAFDIEALGYEAATDLLKH 475

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGDVSVTN--LYDSINKRRNISLERF 553
           +     I    D+F L  ++   T    N  G   G +S     L  ++ + +N  L R 
Sbjct: 476 Q----VIEDEGDLFDLDEQRLLRTEIFVNTSGKNAGKLSANGQKLLHNLEQAKNRDLWRV 531

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +L IRHVG   AR+LA  + S       ++ I + +     +L  V  VG  IA +++
Sbjct: 532 LVALSIRHVGPTAARALATRFGS-------VDAIFSADEQ---TLAEVDGVGPTIAASVI 581

Query: 614 EFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           E++Q    R+I A  A        +    + +   +    +V TG+L+   R   QE + 
Sbjct: 582 EWFQVDWHRSILARWA---AAGVKMAEEREELPQTLAGLTIVVTGSLEGFTRESVQEAII 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G   S  +S+KT  ++ G+  GSK EKA+QLGV +++E  FL LL+
Sbjct: 639 ARGGKASGSVSKKTSYVVAGEGGGSKREKAEQLGVPVIDEAAFLKLLR 686


>gi|257460489|ref|ZP_05625590.1| DNA ligase, NAD-dependent [Campylobacter gracilis RM3268]
 gi|257441820|gb|EEV16962.1| DNA ligase, NAD-dependent [Campylobacter gracilis RM3268]
          Length = 668

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 229/690 (33%), Positives = 357/690 (51%), Gaps = 76/690 (11%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY   +PI  D EYD L  + +      P+LA S  P     +IGG ++    K+ H  
Sbjct: 19  AYYTDDRPIASDEEYDELYSQAEKFEEQNPELALSYSPT---RRIGGAISEGFSKLAHGA 75

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
              S+E I++  DL  ++ R        + +   F +EPK DG  + + YE G  + AA 
Sbjct: 76  QMWSMEDIFDDADLLAWLAR-------GEKSGAQFYVEPKFDGASLNLTYEGGVLISAAT 128

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVYISKNDFLALNDEMIAVGRK 211
           RGDG  GEDV+   RAI ++P    L IP    IE+RGE  I+K+DF ALNDE  A G  
Sbjct: 129 RGDGLIGEDVTQNARAIKSVP----LQIPYAGRIEIRGETLIAKSDFDALNDERAANGES 184

Query: 212 PYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
            ++NPRNAA+G LR+L+   +  R L F   G+G+ S  FA    ++++ +R LGF  + 
Sbjct: 185 LFSNPRNAAAGSLRQLDSAIVAKRKLKFIPWGVGEHSLSFAL-HSQIMEFVRSLGFLRDE 243

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
             R   +   I + Y  + S+R++    +DG+V +V+E S   Q+G   + PR+M+++KF
Sbjct: 244 FCRICKSASEIRAAYEALHSMRASKDLMLDGMVIRVNELSKCAQMGYTVKFPRFMVAYKF 303

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
              +  TRL +I++Q+GRTG +TPVA +  VNI GA ++NATLHN D I  L     +M+
Sbjct: 304 PAVEKVTRLREINLQVGRTGAVTPVAVVYSVNIDGANVSNATLHNFDEIARLG----LMK 359

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
                   D V + R+G+VIPK+  +    R       S P  CP+C  +++ +     G
Sbjct: 360 -------NDFVGIIRSGDVIPKITSVYKQRRDGTQSEISRPDRCPVCGEKLLDE-----G 407

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
            L+   +C   L C A+ +  L +F S+   NIEGL    +   F+S      I    DI
Sbjct: 408 ALI---KCQ-NLDCKARVIGSLIYFCSKKCMNIEGLSDATITQLFESG----KISKIGDI 459

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           + L          + ++ GF D  ++NL  +IN  +N  LERFI SLGI H+G   AR +
Sbjct: 460 YAL------GAQDLADLEGFADKKISNLLGAINASKNAPLERFIASLGIEHIGEVAARKI 513

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWL-----SLIRVPLVGDIIAQAIVEFYQ-NPRNICA 624
           A  +                   DWL      ++R+   G+ +A+++ EF + N   I  
Sbjct: 514 AAAF-----------------GQDWLDASEDEILRLEGFGEAMARSLAEFCKINREKILN 556

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           +  ++   +P +    + V S   ++ +V TGTL +  R + +  +  +GA V   +S K
Sbjct: 557 LSEIIAPRAPQM----QTVKSAFTDRSVVITGTLSR-PRDEFKAKLLAMGAKVQGSVSAK 611

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TD ++ G   GSKL+KA+ LGV++++E +F
Sbjct: 612 TDFVLAGAEAGSKLQKARSLGVRVIDESEF 641


>gi|329116783|ref|ZP_08245500.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020]
 gi|326907188|gb|EGE54102.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020]
          Length = 654

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 222/712 (31%), Positives = 369/712 (51%), Gaps = 67/712 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E+  KEL+ L  +       YY    P + D +YD L      +   +P+ A  + P  
Sbjct: 1   MEKRIKELTDLLNQYRLE---YYTNDSPSVSDQDYDRLYHELVQLEEEYPEYALKDSPT- 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
               +GG +     K  H+ P  SL+  ++ E+L  F  R+     K +  S  +  E K
Sbjct: 57  --QAVGGLVLTGFEKYQHAYPLYSLQDAFSPEELYSFDRRV-----KAEFPSAEYVAELK 109

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++ Y++GK V  A RGDG  GE+++  I+ I  IP  L   I   I VRGE Y+
Sbjct: 110 IDGLSISLNYQEGKLVTGATRGDGSIGENITENIKRIKDIPHQLDQAID--ITVRGEAYM 167

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFA 251
           S+  F  +N E    G   +ANPRNAA+G LR+L+ + + +    +F       T E+  
Sbjct: 168 SRKSFQQINLERQENGETEFANPRNAAAGTLRQLDTSIVAKRELASFLYQEASPTDEL-- 225

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q  +L+K+  LGF VN       +   I  +   ++  R  L YDIDG+V KV+  ++
Sbjct: 226 -SQELVLEKLDNLGFSVNPRRLITQSMDEIWDFIQAIEIERDQLSYDIDGIVIKVNSLAM 284

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG   ++PRW +++KF  ++    +  +D  +GRTG++TP A L PV + G  ++ A
Sbjct: 285 QEELGFTIKAPRWAVAYKFQAEEKEAEIRSVDWTVGRTGVVTPTANLTPVKLAGTTVSRA 344

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN DYI+            +DIR+GD V+V +AG++IP V+ ++ ++R  D++P   P
Sbjct: 345 TLHNVDYIE-----------HKDIRIGDTVIVYKAGDIIPAVLRVVTDKRRDDSEPMPIP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP CQS ++   +        A RC   L C       L+HF SR+A NI GLG   +
Sbjct: 394 SLCPSCQSELIHFEDE------VALRCINPL-CPNLIQRSLEHFASRNAMNISGLGPAIV 446

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  +     A  I   ADI+ L   Q  +      + G  + S   L  +I   +  S +
Sbjct: 447 EKLYS----ANLIHDVADIYKLNLEQLLA------LEGIKEKSAEKLLTAITNSKKNSAD 496

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIRHVGA+ +R L + +        +I +++  N ++   + ++  +G +IA++
Sbjct: 497 KLLFGLGIRHVGAKASRILLEEF-------GDIESLVEANQEE---ISQIDGLGTVIAKS 546

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK------KLVFTGTLQKIQRHK 665
           I  +++        + LL E+  S G +   +  +I+         +V TG L+++ R++
Sbjct: 547 IARYFEK----AEAQLLLSELK-SAGLNLSYLGKKIDKTAKLFGMTVVLTGKLEQLTRNE 601

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A+  +  LGA V++ +S+KTD+++ G + GSKL+KA  LG++I +E+  + L
Sbjct: 602 AKAKLESLGAKVTSSVSKKTDLLVAGSDAGSKLDKASTLGIRIEDEDWLVNL 653


>gi|296273134|ref|YP_003655765.1| DNA ligase, NAD-dependent [Arcobacter nitrofigilis DSM 7299]
 gi|296097308|gb|ADG93258.1| DNA ligase, NAD-dependent [Arcobacter nitrofigilis DSM 7299]
          Length = 648

 Score =  340 bits (871), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 219/682 (32%), Positives = 364/682 (53%), Gaps = 57/682 (8%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P   D EYD L R C A     P L+    PN P  ++GG +     K  H  
Sbjct: 19  AYYVEDNPQASDEEYDKLSRECLAYEQENPSLSH---PNSPNKRVGGFVLEGFEKAAHLS 75

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
              S E ++N  +L  +I R      +K + ++ F  EPK DG  + + YE G    A  
Sbjct: 76  RMWSQEDVFNTVELEDWIKR-----AQKVNTNLEFYCEPKFDGASLNLIYENGVLKQAIT 130

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GEDV+  ++ I +IP  L +    +IE+RGE+ I K DF  +N+E    G + +
Sbjct: 131 RGDGSIGEDVTNNVKTIHSIP--LQIKEQSLIEIRGEIVIKKADFEKINEERAKNGEQLF 188

Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+PT    R L F V G+G+ S  F K   EM++ +  LGF      
Sbjct: 189 ANPRNAAAGSLRQLDPTVTAKRKLFFNVWGIGQHSLDFTK-HSEMMEYVYSLGFVHPPMT 247

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
            +  T  GI   Y+++ + R+++   +DG+V K+++   Q++LG   + PRW  ++KF  
Sbjct: 248 TKTTTVEGIEELYHKIIASRNSITMMLDGMVIKINDIETQEELGYTVKFPRWSCAYKFPA 307

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            + +T + DI  Q+GRTG++TPVA +EP  I G+ +  A+LHN D I  L          
Sbjct: 308 VEKTTTIKDIIQQVGRTGVITPVAVVEPTLIDGSTVERASLHNYDEIARL---------- 357

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
            D+R+ D+V++ ++G++IPK+  + V  R    +  + P+ CP C+S ++ +     G L
Sbjct: 358 -DLRINDQVIIIKSGDIIPKITKVFVERRDGTQEKITRPTLCPKCRSELLDE-----GTL 411

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           +   +C   L C A  +  + +F S++  NI+GLG + ++   + E   + I    D+++
Sbjct: 412 I---KCQ-NLDCPAIIVNSIIYFASKNCMNIDGLGNKIVETLVR-EKKIYDI---LDLYS 463

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L+         +EN+ GF +  + NL ++I K +  SL R I +LGI H+G   ++ +  
Sbjct: 464 LKYED------LENLEGFKEKKINNLLNAIEKTKANSLHRVINALGIEHIGEVASKQIC- 516

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
                  F  ++ NI      D+ SL+ +  +G+ +A + VEF +    +  V  L+  +
Sbjct: 517 -----LEFGLDVVNI------DFDSLVALDGIGEQMANSFVEFMRVNEEL--VSKLIATI 563

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P++    +   +  + K +V TGT+  + R + ++ +  LGA VS+ +S+KTD +I G+
Sbjct: 564 NPTVEEKIEVSENAFKGKTVVITGTMS-VSRGEVKKQLEALGAKVSSSVSKKTDYVIYGE 622

Query: 693 NPGSKLEKAQQLGVKIMNEEQF 714
           + GSK +KA +L VK +NEE+ 
Sbjct: 623 DAGSKYDKAIELNVKTINEEEM 644


>gi|294054681|ref|YP_003548339.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221]
 gi|293614014|gb|ADE54169.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221]
          Length = 711

 Score =  340 bits (871), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 221/703 (31%), Positives = 365/703 (51%), Gaps = 49/703 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE++ L   I  HD  YY+ ++P I D  YD LK R  A+    P+L   +  + P   +
Sbjct: 54  KEIAQLRAAIEKHDRLYYKKAQPEIDDQAYDRLKARLTALESQNPEL---DFGSSPTQTV 110

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +   S     H  P LSL+  +N ++L  F  R+ +   +  + ++ F +EPKIDG  
Sbjct: 111 GDDRLESFESYVHRKPMLSLDNTYNRDELIDFGKRLEK---RFPNQALNFLVEPKIDGVA 167

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ YE+G+F+ A  RG+G  G+D++  +R I  +P  +    P+I+EVRGE+Y+  ++F
Sbjct: 168 VSLTYEEGQFIRAVSRGNGSEGDDITQNVRHIEGLPLQIE-EAPDILEVRGEIYMRHSEF 226

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQY 255
             +N    A G   YANPRN A+G ++ LNP +   R L+  ++G+G  +    F + Q 
Sbjct: 227 ERINAVREAAGEPLYANPRNLAAGTIKLLNPNEARARRLDIVLYGIGACEPQNYFVR-QT 285

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+ Q+++   FPV      ++      +   E+ S R    Y  DG V K+D+F+LQ+Q 
Sbjct: 286 EIQQRLKEWHFPVLEKYWLSSNIVEAWASIEELDSRRQRFTYPTDGAVVKLDDFALQQQA 345

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +++PRW I++KF  ++A T L +I +QIGRTG +TPVA LEPV + G  ++ ATLHN
Sbjct: 346 GFTSKAPRWAIAYKFEAERAETLLKEISLQIGRTGAVTPVAILEPVQLAGTTVSRATLHN 405

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED I+            +DIR GD VLV++AGE+IP+V+ + +++R  D+  F F     
Sbjct: 406 EDEIR-----------RKDIRPGDTVLVQKAGEIIPQVLGVNISKRPADSTTFDFAQHLS 454

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
                  RD      ++V+ H          +Q   L+HF SR   +IE LG   ++   
Sbjct: 455 SLGIDAERDPGEAVWRIVSKHDPI-------RQQRALQHFASRTCMDIENLGTAVVEQLV 507

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                    R  AD++ LQ        K      F + S  NL +++   +   + + I 
Sbjct: 508 SRG----LARTVADLYQLQLDDFLQLEK------FAEKSAQNLVEALEASKQRPVWQLIH 557

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI HVG + A+ L  ++ S         + +A  +++ L  I    +G I+AQ+I  +
Sbjct: 558 GLGIPHVGKQSAKDLEAHFESL--------DALARASEEQLEAIDG--IGSIMAQSIHAW 607

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +++  N   ++ L         +  +     +  K +V TGTL  + R++A   +   G 
Sbjct: 608 FEDSENAELLDRLRTYGLNFRSQRSEPTGGALAGKTVVLTGTLPTMTRNEATALIEAAGG 667

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             S+ +S+KTD ++ G+  GSK  KA++LGV I++E+ F  L+
Sbjct: 668 RTSSSVSKKTDYLLTGEAAGSKYTKAEKLGVPILDEDAFRALI 710


>gi|78185772|ref|YP_378206.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9902]
 gi|123743489|sp|Q3AUH7|DNLJ_SYNS9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78170066|gb|ABB27163.1| DNA ligase (NAD+) [Synechococcus sp. CC9902]
          Length = 680

 Score =  339 bits (870), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 221/697 (31%), Positives = 352/697 (50%), Gaps = 51/697 (7%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P + D+ YD L +    +    P L  ++ P     ++GG        V H I
Sbjct: 21  AYYVLDTPTMEDAVYDRLYQELLELEQNTPSLKTADSPT---QRVGGAPAEGFTSVEHRI 77

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             LSL+  +N +DL  +  R+ R   +   + +    E KIDG  + + Y  G    AA 
Sbjct: 78  GLLSLDNAFNRDDLSAWNERLLRAIDRPLGSPLDLVSELKIDGNALALSYRNGVLERAAT 137

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDG  GE+++A +R I  IP  L L N PE +E+RGE +I  N F  +N E  + G   
Sbjct: 138 RGDGQRGEEITANVRTISAIPLRLRLDNPPEWVEIRGEAFIPDNTFAEINAERESRGEAL 197

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNA +G LR+L+P  +  R L+FF + L   ++     Q++ L  +   GF VN  
Sbjct: 198 FANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPTQEQPASQWDALTWLENAGFRVNPN 257

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
                    I  + +  +  R  LPY  DG+V K++   LQ + G   +SPRW I+ KF 
Sbjct: 258 RALCADLADINRFSDHWEQARHDLPYATDGVVVKLNNLVLQDEAGFTQKSPRWAIALKFP 317

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++A +RLL + +QIGRTG++TPVA  EPV + G  ++ ATLHN D I  L         
Sbjct: 318 AEEAPSRLLRVVVQIGRTGVITPVAEFEPVALAGTSVSRATLHNADRIAEL--------- 368

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+ +GD ++V++AGE+IP+VV ++   R   A P   P  CP C S +VR+     G 
Sbjct: 369 --DLHLGDTIVVRKAGEIIPEVVRVLPELRPSSATPVQLPEHCPECGSNLVRE-----GD 421

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
            VA  RC    +C A     L+H+VS+ A +++GLG + ++      D    +R  AD++
Sbjct: 422 EVAT-RCVNS-SCPAILRGGLRHWVSKGALDVDGLGSKLIEQLV---DQGL-VRSIADLY 475

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L      S  ++      G+ S  NL +++   R  S  R ++ LGI H+G   A+++ 
Sbjct: 476 RLDAALLGSLDRM------GERSANNLIEALKLSRQRSWARQLYGLGIHHIGEVSAKAIT 529

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL--- 628
             +        + N+++         +  +  +G  +AQ++ +++ NP N   ++ L   
Sbjct: 530 AEF-------SDSNSLMEAACTAPERITAIYGIGTELAQSLQQWFSNPANQHLLDDLRSQ 582

Query: 629 -----LKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
                L +  P  GR     S + ++    V TGTL  + R +A+E +   G  VS  +S
Sbjct: 583 GFRFALDDNDP--GRLGAAASEQHLKGLTFVLTGTLPTLSRSEAKERIETCGGKVSGSVS 640

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +KTD ++ G+  GSKL KA  LG+KI++E++   +L+
Sbjct: 641 KKTDYLVAGEEAGSKLTKATTLGIKILDEDRLQAMLK 677


>gi|307704876|ref|ZP_07641768.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597]
 gi|307621589|gb|EFO00634.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597]
          Length = 652

 Score =  339 bits (870), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 219/685 (31%), Positives = 363/685 (52%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V  A R
Sbjct: 76  LYSLQDAFSREELEAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A +   I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAESMDEIWNFIQEVGEERENLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRFSE-EKLDIPTNCPSCDSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            L         K E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RL---------KEEDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +++ S +  AQ           D   +  +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQHFHSIETLAQA----------DPEEVASIESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           L+E   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LREAGVNLAYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++ G + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646


>gi|149003762|ref|ZP_01828594.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69]
 gi|237650785|ref|ZP_04525037.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI 1974]
 gi|237822373|ref|ZP_04598218.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147758208|gb|EDK65210.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69]
          Length = 652

 Score =  339 bits (870), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 363/685 (52%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N +Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646


>gi|315223028|ref|ZP_07864907.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211]
 gi|315187978|gb|EFU21714.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211]
          Length = 652

 Score =  339 bits (870), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 217/680 (31%), Positives = 355/680 (52%), Gaps = 55/680 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L      +   +P+L +++ P    +++GG++     K  H  P
Sbjct: 19  YYTTDNPTVSDSEYDRLYHELLDLEQQYPELVQADSPT---HRVGGKVLEGFEKYQHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  RI     +KD   + +  E KIDG  I++ YEKG  V  A R
Sbjct: 76  LYSLQDAFSREELEAFDVRI-----RKDFPKVSYLCELKIDGLSISLMYEKGILVAGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+++  ++ +  IP VL   +   + VRGE Y+ ++ F  +N      G   +A
Sbjct: 131 GDGSVGENITENLKRVKDIPLVLPTAVN--LTVRGECYMPRSSFDRVNRLRQENGEPEFA 188

Query: 215 NPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274
           NPRNAA+G LR+L+ T I    N       + S   A  Q  +L ++   GF VN     
Sbjct: 189 NPRNAAAGTLRQLD-TAIVAKRNLATFLYQEASPTSATSQEAVLNQLSKNGFSVNERHIL 247

Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334
           A++   +  +  ++   R  LPYDIDG+V KV++  +Q++LG   ++P+W I++KF  ++
Sbjct: 248 AHSMDEVWQFIGQIAQERDQLPYDIDGVVIKVNDLVMQEELGFTVKAPKWAIAYKFPAEE 307

Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394
              +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI             +D
Sbjct: 308 KEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEKD 356

Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
           IR GD V+V +AG++IP V+ ++ ++R  + +    P  CP C S ++   +        
Sbjct: 357 IRKGDTVIVYKAGDIIPAVLQVVESKRQSE-EKLEIPKNCPSCNSELIHFEDE------V 409

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514
           A RC     C AQ  E L HF SRDA NI GLG   ++  F  +       +  D+  + 
Sbjct: 410 ALRCINP-RCPAQIKEGLIHFASRDAMNITGLGPAVVEKLFDQQ-------LVNDVAGIY 461

Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
           R       ++EN   F + S   LY +I   +  S E+ +F LGIRHVG++ ++ L K++
Sbjct: 462 RLTVEDLLQLEN---FKEKSANKLYTAIQASKENSAEKLLFGLGIRHVGSKASQILLKHF 518

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRNICAVEALLKEVS 633
              +  A+     IA  +           +G +IA+++  ++ Q   +I   E  LKE  
Sbjct: 519 HDLEQLAKAEKEEIAALDS----------LGMVIAESLSSYFAQEGTHILLSE--LKEAG 566

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
            +     + V+++  +    +V TG L+++ R +A++ +  LGA V++ +S+KT +++ G
Sbjct: 567 LNFTYLGEKVAADAVLSGLTVVLTGKLERLNRSEAKKKLESLGAKVTSSVSKKTSLVVAG 626

Query: 692 DNPGSKLEKAQQLGVKIMNE 711
            + GSKL KAQ+LG+ I +E
Sbjct: 627 ADAGSKLTKAQELGIDIRDE 646


>gi|307747505|gb|ADN90775.1| DNA ligase [Campylobacter jejuni subsp. jejuni M1]
          Length = 647

 Score =  339 bits (870), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 222/689 (32%), Positives = 367/689 (53%), Gaps = 64/689 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYDAL R       AF +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDALIREL----RAFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L+++W++ED+  F    +R W K+      F +EPK DG  + + YE GK V  A 
Sbjct: 74  ----LKRMWSMEDV--FDESEFRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++   E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  GLG+ +  F K   E++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGLGENTLNFTK-HSEVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           VR       ++  Y+E+ ++R   P  +DG+V ++D+ +L ++LG   + P++M + KF 
Sbjct: 244 VRLCVNLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +  + R       S P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+   +C   + C  + +  + HFVS+   NI+GLG+  ++  +K +           I 
Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+       +  E + GF +  + NL ++I + R   L RFI +LGI H+G   A+ L+
Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
                  +F +E       +   + +   +   G+ +A ++ EF +  R    ++   K 
Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTRVNRT--RIDEFYKL 559

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++  I + E      I  K  V TGTL +  R + +  + +LG  VS  +S+KTD ++ G
Sbjct: 560 LNLKIEKLEIKSDGVIFGKTFVITGTLSR-SRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  GSKL KA++L +K ++E  F  L+++
Sbjct: 619 EEAGSKLIKAKELEIKCIDESAFNELVKE 647


>gi|148994566|ref|ZP_01823725.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68]
 gi|168488962|ref|ZP_02713161.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195]
 gi|147927160|gb|EDK78197.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68]
 gi|183572496|gb|EDT93024.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195]
 gi|332073479|gb|EGI83958.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17570]
          Length = 652

 Score =  339 bits (870), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 363/685 (52%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRSLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N +Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646


>gi|212550985|ref|YP_002309302.1| NAD-dependent DNA ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|254781545|sp|B6YRR9|DNLJ_AZOPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212549223|dbj|BAG83891.1| NAD-dependent DNA ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 663

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 219/709 (30%), Positives = 367/709 (51%), Gaps = 56/709 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++ +L QEI   +  YY   +PI+ D E+D   +  + +   +P+     D   P  +
Sbjct: 4   KQKIDNLRQEIDNWNYRYYVIYQPIVSDFEFDKKLKELEKLEAQYPEYY---DYYSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IG ++N +  ++ H  P LSL   ++ E +  F  RI    +K  + +     E K DG 
Sbjct: 61  IGNDINNNFAQINHIYPMLSLSNTYSWEGINDFYNRI----KKILNENFVIACELKYDGV 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            I++ YE G  + A  RGDG +G+DV+  IR + +IP ++   N P   E+RGE+     
Sbjct: 117 SISLIYESGLLLRAVTRGDGTTGDDVTTNIRTVKSIPLKLYGNNYPRFFEIRGEIVFPWA 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  +N E I     P+ANPRNAA+G L+ LNP  ++ R L+ +++ L     + +   Y
Sbjct: 177 AFNKINKERIENSEPPFANPRNAAAGTLKTLNPQVVSQRNLDAYLYQL-LGDNLSSDSHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ  +  GF V+N ++   T   I ++ N     + +LP+ +DG+V KVD    Q  L
Sbjct: 236 ENLQLAQGWGFKVSNIIKCCKTIDEIENFINYWGKWKKSLPFAVDGVVLKVDSIRQQSLL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  +   T L  +D Q+GRTGI+TP+A LEPV + G ++  A+LHN
Sbjct: 296 GRIAKSPRWAIAYKFQSETVKTTLHSVDFQVGRTGIITPIANLEPVLLSGTIVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
           ED I  L           D+ +GD+  V++ GE+IPK+  I    R     +  +FP  C
Sbjct: 356 EDIINAL-----------DLHIGDQCYVEKGGEIIPKITGINKEARLTFGNKAVNFPKNC 404

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + ++R  N        A+ C     C  Q    + HF SR A NI  +G++ ++ F
Sbjct: 405 PACNTPLIRFQNE------TAYYCPNYTQCKPQIKGMITHFASRKAMNI-NVGEETIETF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYDSINKRRNISLE 551
           ++    A  +R  AD++ +         KI++IL    + + S  N  +S+ + + +  E
Sbjct: 458 YR----AGLVRDIADLYEI---------KIDDILQLKRWAEKSAINFVESVQQSKQVPYE 504

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGI  VG  +A+ LAK + + +  +      IA+N      L  +  +G+ IAQ+
Sbjct: 505 RVLYGLGIHFVGEVVAKRLAKAFPTIEQLS------IANNE----QLTTIDGIGNQIAQS 554

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +++++ N  N+  +  L           +  + +++  K  + +G  +K  R K +E + 
Sbjct: 555 VIQYFSNENNLQLIRRLKLYGLQLFTIQKIFIDNKLAGKTFIISGIFRKYSRDKYKELIE 614

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQ 719
             G    + LS KTD I+ G N G  KL KAQ+ G+KI++E++FL +++
Sbjct: 615 NNGGKNVSSLSAKTDFILSGVNMGPVKLIKAQRFGIKIISEDEFLKMIE 663


>gi|183981708|ref|YP_001849999.1| NAD-dependent DNA ligase LigA [Mycobacterium marinum M]
 gi|254781377|sp|B2HIF0|DNLJ_MYCMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183175034|gb|ACC40144.1| DNA ligase [NAD dependent] LigA [Mycobacterium marinum M]
          Length = 687

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 229/714 (32%), Positives = 367/714 (51%), Gaps = 55/714 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L +++  H   YY    P+I D+E+D L RR +A+   +P+L     P+ P   +
Sbjct: 7   RQWQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPEL---RTPDSPTQLV 63

Query: 79  GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG    + F+ V H    LSL+  +N E+L  +  RI+        +S  +  E KIDG 
Sbjct: 64  GGAGFATEFEPVEHLERMLSLDNAFNTEELTAWAGRIH----ADVGDSAAYLCELKIDGV 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            +++ YE G+   A+ RGDG +GEDV+   R I  +P  LS +    +PE++EVRGEV+ 
Sbjct: 120 ALSLVYEGGRLTRASTRGDGRTGEDVTLNARTIEDVPERLSHSEDHRMPEVLEVRGEVFF 179

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG T      
Sbjct: 180 RVADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTEGFRPA 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             ++    ++  G PV+          G+   + Y+ E    R  + ++IDG+V KVD+ 
Sbjct: 240 TLHQAYLALQAWGLPVSQHTTLVADLAGVQERIDYWGEH---RHEVDHEIDGVVVKVDDV 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ + 
Sbjct: 297 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVA 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +K         R G  + +GD V++++AG+VIP+V+  +V+ R    + F 
Sbjct: 357 QATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFV 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +  +   K G   A  RC    +C  Q  ER+ H  SR+A +IE LG  
Sbjct: 406 MPTTCPECGTPLAPE---KEGD--ADIRCPNTRSCPGQLRERVFHVSSRNALDIEMLG-- 458

Query: 490 QLDFFFKSEDPAFSIRI---PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
                +++     S R+     D+F L   +   T       G    +   L  +++K +
Sbjct: 459 -----YEAGAALLSARVIGDEGDLFGLTEEELLRTDLFRTKAGDLSANGRRLLANLDKAK 513

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L R + +L IRHVG   AR+LA  + S       I+ I++   +    L  V  VG 
Sbjct: 514 AAPLWRVLVALSIRHVGPTAARALATEFGS-------IDAIVSATTE---QLAAVEGVGP 563

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            IA A+ E++    +   VE             + +V   +    +V TG+L    R +A
Sbjct: 564 TIASAVSEWFTVDWHREIVEKWRAAGVRMADERDDSVPRTLAGVTVVVTGSLPGFSRDEA 623

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +E +   G   +  +S+KT  ++ GD PGSK +KA +LGV I++E+ F  LL+Q
Sbjct: 624 KEAIVTRGGKAAGSVSKKTSYVVAGDAPGSKYDKAVELGVPILDEDGFRKLLEQ 677


>gi|330751993|emb|CBL80506.1| DNA ligase [uncultured Polaribacter sp.]
          Length = 665

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 216/705 (30%), Positives = 368/705 (52%), Gaps = 54/705 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L ++++ H+  YY      I D ++D   +  + +    P    S   N P  ++
Sbjct: 5   EKIKELREQLNNHNYNYYVLDNATISDFDFDRTLKELEKLEKENPIFFNS---NSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +  +   + H     SL+  ++ EDL  +  R+ +     +   + FT E K DG  
Sbjct: 62  GGTVTKNFNTIVHKNRMYSLDNSYSKEDLLDWEKRVEKVLGVSE---LEFTCELKFDGAS 118

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + YE G+FV A  RGDG  G++V+  I+ I +IP  +        E+RGE+ +  + F
Sbjct: 119 INLTYENGQFVKAVTRGDGFQGDEVTNNIKTIRSIPLSIKEEFISNFEMRGEIVLPIDGF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
           + +N+E I  G + Y NPRN ASG L+  +  ++  R L+  ++ +  T E   K  +E 
Sbjct: 179 IKMNEERILNGEEVYRNPRNTASGSLKLQDSGEVAKRPLDCLLYQM-VTEERKYKTHFES 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+  R +GF V   +  A +   +  + N   + R+ LPY+ DG+V KV+    Q++LG 
Sbjct: 238 LENARKVGFKVPKTITLAKSIDAVFDFVNYWDAKRNDLPYETDGIVIKVNNLQQQEELGY 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A++PRW I++KF   Q ST L +I  Q+GRTG +TPVA L PV + G  +  A+LHN D
Sbjct: 298 TAKAPRWAIAYKFKAAQVSTILNEITYQVGRTGAITPVANLNPVQLAGTTVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+ L           DIR  D V V++ GE+IPK++ +   +R  ++ P  + + CP C
Sbjct: 358 QIERL-----------DIREKDTVFVEKGGEIIPKIIAVDHTKRSENSAPTMYATNCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            + +VR          A H C     C+ Q   R++H++SR A +I+GLG + +D   K 
Sbjct: 407 DTALVRTEGD------AKHYCPNEFGCAPQITGRIQHYISRKAMDIDGLGGETVDLLRKE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I+  AD++ L   Q     ++       + S  N+   I K + I  E+ +F+L
Sbjct: 461 G----LIQNYADLYDLNVAQIIPLERM------AEKSAQNMISGIEKSKEIPFEKVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ LAK++ S       I++++    ++   LI+   +GD IAQ+I++F  
Sbjct: 511 GIRFVGETVAKKLAKHFKS-------IDHLMTATFEE---LIKADEIGDRIAQSILDFSS 560

Query: 618 NPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  NI  +       L  EVS ++  ++  +   ++ +  V +G   ++ R++ ++ +  
Sbjct: 561 DLGNIQLINRLKSYGLQLEVSAAVLENQTEI---LQGQIFVVSGVFYQMSRNELKKAIED 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
            G  VS+ +S+KT+ I+ GDN G SKL KAQ LG+ I++E+ F++
Sbjct: 618 NGGKVSSSISKKTNFIVAGDNMGPSKLTKAQDLGISIISEQDFIY 662


>gi|237785838|ref|YP_002906543.1| NAD-dependent DNA ligase LigA [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758750|gb|ACR18000.1| DNA ligase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 686

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 223/725 (30%), Positives = 365/725 (50%), Gaps = 59/725 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + + +SL  ++ +H D YY  S+P+I D+E+D L +    +    P+LA++     P  +
Sbjct: 6   QAQWNSLAADVRHHRDLYYN-SEPVISDAEFDHLFKTLQDLEADHPELAKN---GSPTEE 61

Query: 78  IGGEM----NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           +G  +      S  +VT + P   +E++++++++  F       W  +     + T E K
Sbjct: 62  VGAPVPTPTETSSAEVTFA-PVRHIERLYSLDNV--FSKSELLEWLHRTPAPTYLT-ELK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRG 189
           IDG  I + Y  G+ V AA RGDG +GED++   R I  IP+ +S      +PE++EVRG
Sbjct: 118 IDGLSIDLVYRDGELVSAATRGDGLTGEDITPNARTISDIPQTISPTDEYPVPELVEVRG 177

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EV+I   +F  +N + +  GRKP+ANPRNAA+G LR+ NP +   R L+   HG+G    
Sbjct: 178 EVFIGVEEFAVINADRVEQGRKPFANPRNAAAGSLRQKNPAETAKRNLSMICHGIGAREG 237

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++    +   GF V+   ++  +   +++        R    +++DGLV KVD+
Sbjct: 238 WEPSTQHDAYTALAAWGFRVSPYTKRVTSADEVIAQMEYWGEHRHDATHEMDGLVVKVDD 297

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LGE +R+PRW I++K+  ++  T L DI I IGRTG  T  A L+PV + G+ +
Sbjct: 298 LAEQEDLGETSRAPRWAIAYKYPPEEVVTTLRDIRIGIGRTGRATTYAVLDPVLVAGSTV 357

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN   +             + + +GDRV +++AGEVIP+V+  + + R    +PF
Sbjct: 358 ARATLHNPSEVH-----------DKGVLIGDRVTIRKAGEVIPEVLGPVADARDGSEKPF 406

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            F + CP C + +V+          A  RC     C  Q L R+ +   R AF+I+ LG 
Sbjct: 407 VFSTVCPECGTPLVQAKADD-----ADWRCPNTQGCPGQLLARMTYLAGRSAFDIDALGV 461

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQ----RRQQTSTTKIENILGFGDVSVTNLYDSINK 544
             +    +S     ++   +++F L     R     TTK   I   G   + NL ++   
Sbjct: 462 SGIQDLIRS----GALTNESELFDLDESHLRLTSVFTTKAGKINATGKALLKNLEEA--- 514

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++  L R I +L IRHVG   AR+LA  Y S +                   L R+  V
Sbjct: 515 -KSTELWRVIVALSIRHVGPTAARALATKYGSLEAIRSASEE----------ELARIDGV 563

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G IIA ++  ++    +I  V+A            ++     +E   +V TGTL+   R 
Sbjct: 564 GSIIAASLCSWFAVDWHIKIVDAWAAAGVRMEDDKQQAQPQTLEGTTVVVTGTLEDFTRD 623

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            A+E +   G   +  +S+KT+ ++VG N GSK  KA+ LG++I++E+ F  LL+    T
Sbjct: 624 SAKEAIISRGGRAAGSVSKKTNYVVVGANAGSKETKARDLGLRILDEDGFKELLE----T 679

Query: 725 LRIHD 729
            R+ D
Sbjct: 680 GRVSD 684


>gi|291299865|ref|YP_003511143.1| DNA ligase NAD-dependent [Stackebrandtia nassauensis DSM 44728]
 gi|290569085|gb|ADD42050.1| DNA ligase, NAD-dependent [Stackebrandtia nassauensis DSM 44728]
          Length = 749

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 236/769 (30%), Positives = 367/769 (47%), Gaps = 98/769 (12%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + AR+  + L  EI  H   Y++   P I D+EYDAL R   AI  A P LA  + P+  
Sbjct: 16  DAARERHTKLAAEIDRHRQLYHRDDAPQISDAEYDALMRELLAIEEAHPVLATQDSPS-- 73

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+++     V H+    SL+  ++ E+L  ++ R+       +     +  E KI
Sbjct: 74  -QQVGGDVSELFASVRHAERLYSLDNAFSPEELTAWVERV-----TAEVPGEAYLCELKI 127

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGE 190
           DG  + + YE G  V  A RGDG +GED++  +R I +IP  L       +PE +E+RGE
Sbjct: 128 DGLAVNLTYENGVLVRGATRGDGTTGEDITPNVRTIASIPEKLKGTKKYPVPEFVEIRGE 187

Query: 191 VYISKNDF--------------LALNDEMIAVGRK-----P-YANPRNAASGILRRLNPT 230
           V++S   F               A N+E  A G++     P YANPRNAA+G LR+ +PT
Sbjct: 188 VFMSTESFEKLNADRLAENERITAANEERKAEGKRLQKLLPLYANPRNAAAGSLRQKDPT 247

Query: 231 -DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
              +R L+  V+G G         Q +    ++  G P ++  +  +T  G+  Y     
Sbjct: 248 ITASRALSMTVYGFGARRGFEPTHQSQGYAALKAWGLPTSSYFKVLDTVEGVTEYIEHYG 307

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  + ++IDG+V K+D+ ++Q++LG   R+PRW I++K+  ++ +T L DI + +GRT
Sbjct: 308 EHRHDIEHEIDGVVIKIDDIAVQRRLGSTTRAPRWAIAYKYPPEEVTTTLRDIKVSVGRT 367

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G  TP A LEPV + G+ +  ATLHN+D +K            + + +GDRV++++AG+V
Sbjct: 368 GRATPYAVLEPVRVAGSEVEFATLHNQDIVKA-----------KGVLIGDRVIIRKAGDV 416

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IP+V+  +   R  D   F  PS CP C + + R ++     L    RC    +C AQ  
Sbjct: 417 IPEVLGPVEGARTGDEHEFVMPSNCPECGTEL-RQMSEGDIDL----RCPNARSCPAQLR 471

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQ----------- 517
           ERL +   R   +I+GLG        +  +P    +    D+F L   Q           
Sbjct: 472 ERLSYLTGRSCLDIDGLGYVACTALVQPLEPKQPPLADEGDLFNLTMEQLLPIKSLVLDP 531

Query: 518 -------QTSTTKIENILGFG------DVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
                     T K + +  F           T + + I   +   L R I  L IRHVG 
Sbjct: 532 DSGLPKKDPKTGKDKEVTYFATQDGAPKAGATKMLEGIEAAKQQELWRIINGLSIRHVGP 591

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             AR+LA           E  ++ A  + D   L  V  VG  IA A+ +++    ++  
Sbjct: 592 VAARALAT----------EFGDLDAIRDADEERLAAVDGVGPTIATAVKQWFAEDWHVEI 641

Query: 625 VEAL------LKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           +E          E  P  G RH   ++       +V TG+L+   R  A E V   G  V
Sbjct: 642 LEKWRAAGVRFVEERPEAGERHLAGLT-------VVITGSLEGWTRDGAAEAVRVRGGKV 694

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           S  +S+KT  ++VGD+PGSK +KA +LGV I++ E F  LL +    +R
Sbjct: 695 SGSVSKKTSFVVVGDSPGSKYDKAVKLGVPILDTEGFATLLSEGPDAVR 743


>gi|330995784|ref|ZP_08319681.1| DNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329574514|gb|EGG56079.1| DNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 669

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 223/708 (31%), Positives = 366/708 (51%), Gaps = 55/708 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++++  L  E+  H+  YY  + P I D E+D + R    +  A P+    +DP+ P 
Sbjct: 4   EVKEQIERLRSELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEF---DDPDSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N    +V H  P LSL   +N +++  F  R+    + +         E K D
Sbjct: 61  RRVGSDLNQEFVQVPHRYPMLSLSNTYNKQEVADFYERVRSGLEGE---PFEICCEMKYD 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  I++ YE+G+ V A  RGDG  G+DV+  ++ I  IP  L+ N  PE  E+RGE+ + 
Sbjct: 118 GLSISLTYEQGRLVRAVTRGDGVQGDDVTENVKTIRCIPLRLNGNGYPEEFEIRGEILMP 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F ALN E        +ANPRNAASG L+  N   +  R L+ +++ L      F  G
Sbjct: 178 WTSFEALNREREEREEPLFANPRNAASGTLKSKNSAVVAQRKLDAYLYYLLGEHVPF-DG 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ     GF ++ G+++  T  GI  + +     R  LP   DG+V KV+    Q+
Sbjct: 237 HYENLQAACSWGFKISGGMKKVTTLQGIYDFIDYWDVERKNLPVATDGIVLKVNSQRQQR 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA ++PV + G ++  ATL
Sbjct: 297 ALGYTAKSPRWAIAYKFQAERARTRLNAVTFQVGRTGTVTPVANMDPVQLAGTVVRRATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS-FPS 432
           HN D ++ L           D+ +GD V V++ GE+IPK+V + ++ R  +  P + F +
Sbjct: 357 HNADVMEQL-----------DLHIGDMVYVEKGGEIIPKIVGVDIDARGAETGPRAEFIT 405

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +VR      G+  AA  C    AC  Q   R++H++SR A NI+ LG + +D
Sbjct: 406 RCPECGAELVR----YEGE--AAWYCPNDTACPPQIKGRIEHYISRRAMNIDSLGPETVD 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG--DVSVTNLYDSINKRRNISL 550
            +++       IR  AD++ +         ++E I G G  + S   +  SI     +  
Sbjct: 460 DYYRRG----LIRDVADLYDI---------RVEQINGDGTREKSAQKIVRSIADSVEVPF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F+LGIR VG   A++LA+++ S            A ++     ++++  +G +IA+
Sbjct: 507 ERVVFALGIRFVGEIAAKALARHFKSMD----------ALSSASLEDMLQINGIGVVIAE 556

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +++ ++ N  N   V  L  K V   +   E  + S ++  + +V +G      R + + 
Sbjct: 557 SVIRYFANEANHDLVRRLREKGVRMELSDEELSSHSDKLSGQSIVVSGVFSLHSRDEYKA 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
            + Q G      +S KT  ++ G N G +KLEKA +LG+ I++EE+FL
Sbjct: 617 MIEQHGGKNVGSISSKTSFVLAGANMGPAKLEKAGKLGIPILSEEEFL 664


>gi|254820448|ref|ZP_05225449.1| NAD-dependent DNA ligase LigA [Mycobacterium intracellulare ATCC
           13950]
          Length = 693

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 225/712 (31%), Positives = 365/712 (51%), Gaps = 49/712 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R++   L + +  H   YY    PII D+E+D++     A+    P+L  ++ P   +
Sbjct: 12  EVRRQWQDLAEAVREHQFRYYIKDAPIISDAEFDSMFNELLALEERHPELRVADSPTQLV 71

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
              G   + +  +  H    LSL+ +++ ++L  +  R+    + +      +  E KID
Sbjct: 72  GGAGFATDFA--EAQHLERMLSLDDVFDRDELVAWSNRV----ENEVGKEPHYLCELKID 125

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEV 191
           G  +++ Y  G+   AA RGDG  GEDV+   R I  +P  LS       P ++EVRGEV
Sbjct: 126 GVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSAGKDFPAPSLLEVRGEV 185

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           +    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HG+G+T    
Sbjct: 186 FFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTEGFA 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307
            K Q+E    ++  G PV     +      +   + Y+ E    R  L ++IDG+V KVD
Sbjct: 246 PKTQHEAYAALKAWGLPVAEQTARVRGLAAVEERIGYWGEH---RYDLEHEIDGVVVKVD 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ 
Sbjct: 303 DVALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGST 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN         + +V R G  + +GD V++++AG+VIP+V+  +V+ R    + 
Sbjct: 363 VGLATLHN---------AAEVKRKG--VLIGDTVMIRKAGDVIPEVLGPVVDLRDGSERE 411

Query: 428 FSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           F  P+ CP C +     L P K G   A  RC    +C AQ  ER+ H   R AF+IEGL
Sbjct: 412 FVMPTTCPECDT----PLAPAKEGD--ADIRCPNARSCPAQLRERVFHVAGRGAFDIEGL 465

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +      K+E     I    D+FTL       T       G    +   L D+++K +
Sbjct: 466 GYEAAIALLKAE----VIADEGDLFTLTEDDLLRTELFRTKAGTLSANGRRLLDNLDKAK 521

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            ++L R + +L IRHVG   AR+LA  +        +++ I++ + +    L  V  VG 
Sbjct: 522 KVALWRVLVALSIRHVGPTAARALATEF-------GDLDAIVSASTE---RLAAVEGVGP 571

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            IA A+ E++    +   V+             + +V   +E   +V TG+L    R  A
Sbjct: 572 TIAAALTEWFTVDWHRAIVDKWRAAGVRMADERDTSVPRTLEGLTVVVTGSLAGFSRDDA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +E +   G   +  +S+KTD ++ GD+PGSK +KA +LGV +++E+ F  LL
Sbjct: 632 KEAILARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPVLDEDGFRRLL 683


>gi|149024919|ref|ZP_01836320.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72]
 gi|303259779|ref|ZP_07345754.1| DNA ligase [Streptococcus pneumoniae SP-BS293]
 gi|303262954|ref|ZP_07348889.1| DNA ligase [Streptococcus pneumoniae SP14-BS292]
 gi|303264916|ref|ZP_07350832.1| DNA ligase [Streptococcus pneumoniae BS397]
 gi|303266897|ref|ZP_07352775.1| DNA ligase [Streptococcus pneumoniae BS457]
 gi|303268933|ref|ZP_07354718.1| DNA ligase [Streptococcus pneumoniae BS458]
 gi|147929542|gb|EDK80536.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72]
 gi|301794230|emb|CBW36650.1| DNA ligase [Streptococcus pneumoniae INV104]
 gi|302635931|gb|EFL66431.1| DNA ligase [Streptococcus pneumoniae SP14-BS292]
 gi|302638984|gb|EFL69444.1| DNA ligase [Streptococcus pneumoniae SP-BS293]
 gi|302641551|gb|EFL71913.1| DNA ligase [Streptococcus pneumoniae BS458]
 gi|302643595|gb|EFL73864.1| DNA ligase [Streptococcus pneumoniae BS457]
 gi|302645604|gb|EFL75835.1| DNA ligase [Streptococcus pneumoniae BS397]
 gi|332202976|gb|EGJ17044.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47901]
          Length = 652

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 363/685 (52%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N +Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646


>gi|294783065|ref|ZP_06748389.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA]
 gi|294479943|gb|EFG27720.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA]
          Length = 696

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 225/706 (31%), Positives = 379/706 (53%), Gaps = 50/706 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L++++  + D YY  ++ +I D E+D L +  +++   +P+    ++ + P   +G  + 
Sbjct: 34  LKEDLDKYRDSYYNDNESLISDYEFDILLKELESLEEKYPEY---KEASSPTESVGASLK 90

Query: 84  LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
            + FK V H  P LSL   +NI ++  FI RI +   K  +  + + LE K+DG  I++ 
Sbjct: 91  ENKFKKVEHEHPMLSLANSYNIGEVVDFIERIKKRISK--EQELKYCLEVKLDGLSISLT 148

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           Y +GK V A  RGDG  GEDV+  I  I ++ + L   I   IE+RGE+ +    F  LN
Sbjct: 149 YIQGKLVRAVTRGDGFIGEDVTENILQIASVVKTLPQAID--IEIRGEIVLPLASFEKLN 206

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
            E +  G + +ANPRNAASG LR+L+P  +  R L+ + + L +  ++  K   E ++ +
Sbjct: 207 KERLEKGEELFANPRNAASGTLRQLDPEIVKERALDAYFYFLVEADKLGLKSHSESMKFL 266

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             +G               I    +  +  R  LPY+ DGLV KVDE +L  ++G  +++
Sbjct: 267 ESMGIKTTGIFELLENSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWDEIGYTSKT 326

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF   Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN   I+ 
Sbjct: 327 PRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNISEIQ- 385

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+C  ++
Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKTIEEPINCPVCNHKL 435

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+        +   +C     C A+    +++FVSRDA NI GLG + ++ F    D  
Sbjct: 436 EREEG------LVDIKCVNE-ECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
           + I+   DI+ L+  ++    ++ENI   G  S+ NL +SI + +N   ++ I++LGI  
Sbjct: 486 Y-IKTVVDIYDLKNHRE----ELENIDKMGKRSIENLLNSIEESKNREYDKVIYALGIPF 540

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   ++ LAK        ++ I+ +++   ++   L  +  +G+I A  I+ F++  + 
Sbjct: 541 IGKVASKVLAKA-------SKNIDKLMSMTFEE---LTSIEGIGEIAANEIIVFFKKEKT 590

Query: 622 ICAVEALL-KEVSPSIGRHE---KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              V AL  K +   I   E   +N++     K  +FTGTL+   R + +E + +LG   
Sbjct: 591 QKLVAALKEKGLKFEIAESEIKVENLNPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKN 650

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
            + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 651 LSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|305682056|ref|ZP_07404860.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266]
 gi|305658529|gb|EFM48032.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266]
          Length = 715

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 225/724 (31%), Positives = 364/724 (50%), Gaps = 64/724 (8%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P E    ++  +E   L  E++ H + YY  + P I D+E+DAL ++ +A+    P+LA 
Sbjct: 12  PAETTDTQEIHQEWQRLASEVTRHRELYYNQT-PEITDAEFDALFKKLEALEADHPELAT 70

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +  S   V H    LSL+ +++ E+L +++ R+         ++  
Sbjct: 71  ---PDSPTQQVGAPVESSFENVEHLERMLSLDNVFDEEELDEWLQRV---------DAPE 118

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPE 183
           +  E KIDG  + + Y  G    AA RGDG  GEDV+   + I  +P  L+      IP+
Sbjct: 119 YVTELKIDGLSLALVYRNGVLERAATRGDGRIGEDVTENAKVIQDVPHTLTATEEFPIPD 178

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHG 242
           ++EVRGEV+I+  DF  +N++    G KP+ANPRNAA+G LR+ +   + R  L    HG
Sbjct: 179 LLEVRGEVFIAVEDFAEVNEQRQKDGGKPFANPRNAAAGSLRQKDVEAVRRRKLRMLCHG 238

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF---HGIVSYYNEMKSIRSTLPYDI 299
           +G T       QY   + +   G PV++  +   T    H  V+Y+ +    R     ++
Sbjct: 239 IGATEGFTPASQYHAYEALAAWGLPVSDYTKLVKTIDEVHKQVAYWEKH---RGDAVCEM 295

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DGLV KVD  + Q+QLG  +R+PRW I++K+  ++  T+LLDI   +GRTG +TP A +E
Sbjct: 296 DGLVVKVDSIAEQRQLGATSRAPRWAIAYKYPPEEVQTKLLDIHEGVGRTGRVTPYAVME 355

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV++ G+++  ATLHN+  +K         R G  + +GD V++++AGE+IP+V+  +V 
Sbjct: 356 PVSVAGSIVELATLHNQTEVK---------RKG--VLIGDTVVIRKAGEIIPEVLGPVVE 404

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    + + FP  CP C ++    L P+    V   RC     C AQ   R+K+   R 
Sbjct: 405 RRDGTEREYVFPENCPSCGTK----LAPQREGDV-DWRCPNSQKCPAQVAARIKYLADRG 459

Query: 480 AFNIEGLGKQQLDFFFKS-----EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            F+IE LG++  +   +S     E   F++   AD+     R    TTK   +   G   
Sbjct: 460 RFDIEALGEKAAEDLVRSGVLVDEGGLFNL-TEADLL----RTSIYTTKKGTLNATGKKL 514

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
           + NL  +    ++  L R + SL IR VG   +R+LA  Y S           IA     
Sbjct: 515 LKNLETA----KHTDLWRVMASLSIRMVGNTASRALASRYRSLDALRAATVEDIAETEG- 569

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
                    VG ++AQ+  ++++   +   V+   K                +    +V 
Sbjct: 570 ---------VGLVMAQSFKDWFEVQWHCDIVDQWAKSGVTVEDDASDRPEQVLAGLTVVV 620

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L+   R  A+E +   G   S  +S+KTD ++VG+  GSK +KA+ LG+ I++E  F
Sbjct: 621 TGSLEGFTRDSAKEAIISRGGKASGSVSKKTDYVVVGEKAGSKEQKARDLGLTILDEAGF 680

Query: 715 LFLL 718
           + LL
Sbjct: 681 VQLL 684


>gi|225022751|ref|ZP_03711943.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944472|gb|EEG25681.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 699

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 229/728 (31%), Positives = 369/728 (50%), Gaps = 72/728 (9%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P E    ++  +E   L  E++ H + YY  + P I D+E+DAL ++ +A+    P+LA 
Sbjct: 5   PAETTDTQEIHQEWQRLASEVTRHRELYYNQT-PEITDAEFDALFKKLEALEADHPELAT 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +  S   V H    LSL+ +++ E+L +++ R+         ++  
Sbjct: 64  ---PDSPTQQVGAPVESSFENVEHLERMLSLDNVFDEEELDEWLQRV---------DAPE 111

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPE 183
           +  E KIDG  + + Y  G    AA RGDG  GEDV+   + I  +P +L+      IP 
Sbjct: 112 YVTELKIDGLSLALVYRNGVLERAATRGDGRIGEDVTENAKVIQDVPHMLTATEEFPIPN 171

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHG 242
           ++EVRGEV+I+  DF  +N++    G KP+ANPRNAA+G LR+ +   + R  L    HG
Sbjct: 172 LLEVRGEVFIAVEDFAEVNEQRQKDGGKPFANPRNAAAGSLRQKDVEAVRRRKLRMLCHG 231

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF---HGIVSYYNEMKSIRSTLPYDI 299
           +G T       QY   + +   G PV++  +   T    H  V+Y+ +    R     ++
Sbjct: 232 IGATEGFTPASQYHAYEALAAWGLPVSDYTKLVKTIDEVHKQVAYWEKH---RGDAVCEM 288

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DGLV KVD  + Q+QLG  +R+PRW I++K+  ++  T+LLDI   +GRTG +TP A +E
Sbjct: 289 DGLVVKVDSIAEQRQLGATSRAPRWAIAYKYPPEEVQTKLLDIHEGVGRTGRVTPYAVME 348

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV++ G+++  ATLHN+  +K         R G  + +GD V++++AGE+IP+V+  +V 
Sbjct: 349 PVSVAGSIVELATLHNQTEVK---------RKG--VLIGDTVVIRKAGEIIPEVLGPVVE 397

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    + + FP  CP C ++    L P+    V   RC     C AQ   R+K+   R 
Sbjct: 398 RRDGTEREYVFPENCPSCGTK----LAPQREGDV-DWRCPNSQKCPAQVAARIKYLADRG 452

Query: 480 AFNIEGLGKQQLDFFFKS-----EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            F+IE LG++  +   +S     E   F++   AD+     R    TTK   +   G   
Sbjct: 453 RFDIEALGEKAAEDLVRSGVLVDEGGLFNL-TEADLL----RTSIYTTKKGTLNATGKKL 507

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
           + NL  +    ++  L R + SL IR VG   +R+LA  Y S           IA     
Sbjct: 508 LKNLETA----KHTDLWRVMASLSIRMVGNTASRALASRYRSLDALRAATVEDIAETEG- 562

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK---- 650
                    VG ++AQ+  ++++   +   V+   K    S    E + S + E      
Sbjct: 563 ---------VGLVMAQSFKDWFEVQWHCDIVDQWAK----SGVTMEDDASDQPEQVLAGL 609

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+L+   R  A+E +   G   S  +S+KTD ++VG+  GSK +KA+ LG+ I++
Sbjct: 610 TVVVTGSLEGFTRDSAKEAIISRGGKASGSVSKKTDYVVVGEKAGSKEQKARDLGLTILD 669

Query: 711 EEQFLFLL 718
           E  F+ LL
Sbjct: 670 EAGFVQLL 677


>gi|227488027|ref|ZP_03918343.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091889|gb|EEI27201.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 679

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 220/703 (31%), Positives = 356/703 (50%), Gaps = 52/703 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM- 82
           L  ++ YH D YY    P I D+E+D L  +   +    P L     P+ P  ++G    
Sbjct: 12  LAAQVRYHRDKYYN-GTPEITDAEFDVLFSQLQQLEAEHPGL---RAPDSPTLEVGAPSP 67

Query: 83  -NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
              S   + H     SL+ +++ ++L +++ R           S  +++E KIDG  I +
Sbjct: 68  EGSSFENIAHLERMYSLDNVFSKDELEQWLIRT---------PSDTYSVELKIDGVSIDL 118

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKND 197
            Y  G+   AA RGDG  GE+++A  R I  IP  L  N    IP ++EVRGEVYI+ +D
Sbjct: 119 VYRDGELATAATRGDGTVGEEITANARMITGIPDHLQENDAFPIPSVLEVRGEVYIAIDD 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++     +KP+ANPRNAA+G +R+ +P  +  R L    HG+G    I  + Q E
Sbjct: 179 FPLVNEQRQLENKKPFANPRNAAAGSMRQKDPQAVKKRKLTLVCHGIGAAEGISVESQTE 238

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
             + +   G PV+      ++   +     +    R    +++DG+V KVD    Q+ LG
Sbjct: 239 AYKALAAFGLPVSEYTTVVHSHEEVHEMVEKWADHRHDAVFEMDGMVVKVDNREQQRALG 298

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I++K+  ++A T+L+D+ + +GRTG +TP A +EPV + G+ +  ATLHN+
Sbjct: 299 ATSRAPRWAIAYKYPPEEAVTKLIDVRVGVGRTGRVTPFAIMEPVEVAGSTVEMATLHNQ 358

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                     +V R G  + +GD+V++++AGEVIP+V+  + + R    +PF FP+ CP 
Sbjct: 359 S---------EVNRKG--VLIGDQVVIRKAGEVIPEVLGPVADLRDGTERPFVFPTLCPQ 407

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C ++    L P   +  A  RC    +C  Q   RL++   R  F+IE LG++      +
Sbjct: 408 CGTK----LAPAK-EEDADWRCPNTRSCPGQLAGRLEYIAGRGVFDIEALGEKAAADLVR 462

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      +   AD+FTL       +    N  G  + +   L   +  ++   L R I  
Sbjct: 463 T----GILTDEADLFTLTEDDLLDSRVYTNSKGAVNAAGKKLIAGLKTQKETDLWRVITG 518

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L IRHVG   AR+LA+ + S     +     +A              VG +IA +IV+++
Sbjct: 519 LSIRHVGPTAARALAREFGSMDAIRKATEEELAATEG----------VGGVIAASIVDWF 568

Query: 617 QNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
               +   V+A  +  V+    R E    + +E   +V TG+L+   R  A+E + + G 
Sbjct: 569 SVDWHRAIVDAWAEAGVTMEDERGEAKEQT-LEGLTIVVTGSLENYTRDGAKEAIIERGG 627

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             S  +S+KTD ++VG N GSK  KA++LG  I+NE+QF  LL
Sbjct: 628 KASGSVSKKTDYVVVGANAGSKAAKAEELGRPIINEQQFEELL 670


>gi|124006376|ref|ZP_01691210.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134]
 gi|123988033|gb|EAY27704.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134]
          Length = 691

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 214/720 (29%), Positives = 373/720 (51%), Gaps = 63/720 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++A++ +  L +++ +++  YYQ    ++ D ++D L      +   FP   + + P
Sbjct: 1   MTNQEAQERIRELSKDLHHYNYMYYQKHVSVVTDYKFDKLLEELIDLEEKFPQFKKDDSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG +      + H    LSL   ++ +DL  F  R+ +     DD  I +  E
Sbjct: 61  S---QRVGGTITKDFPTIKHRYRMLSLGNTYSKDDLLDFDKRLKKLL--GDDKEIEYICE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            K DG  I++ YE GK V AA RGDG  G+DV+A  R I T+P  +  N  P   EVRGE
Sbjct: 116 LKFDGVSISLTYENGKLVTAATRGDGVQGDDVTANARTIRTVPISIQGNSFPANFEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-----YLNFFVHGLGK 245
           V++    F A+N + +  G+  YANPRN ASG ++  +  ++ +     YL F    LG 
Sbjct: 176 VFMPNKVFEAINAQRVKEGKDLYANPRNTASGTMKLQDSAEVAKRKLDAYLYFL---LG- 231

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              +  K   E ++ +   GF V+   ++      ++ Y N  +  R  LP D DG+V K
Sbjct: 232 -DNLPYKTHEEAIKAVESWGFHVSPTYKRCTGIDAVMEYVNHWEKERKNLPVDTDGVVIK 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++  LQ+QLG  ++SPRW I++K+  +  ST L  I  Q+GRTG +TPVA L PV + G
Sbjct: 291 VNDIDLQEQLGFTSKSPRWAIAYKYKAESVSTVLNSITYQVGRTGSVTPVAELTPVQLAG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  A+LHN D I+              +   D V V++ GE+IPKV  + + +R  +A
Sbjct: 351 TTVKRASLHNADEIESR----------LQLHENDTVFVEKGGEIIPKVTGVDLTKRAANA 400

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           Q   F   CP C + +VR    K G+  A H C     C  Q   R++HF+ R+A +I+ 
Sbjct: 401 QAVKFIDHCPECGTALVR----KDGE--ANHYCPNEKGCPPQIKGRIEHFIQRNALDIDS 454

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G + ++  F+       ++  AD++ L  +Q  S  +      FG+ S  NL + + + 
Sbjct: 455 MGGETINQLFEKG----LVKNVADLYDLTLKQLLSLDR------FGEKSAHNLIEGLKQS 504

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++IS  R ++ LGIR VG  +A+ LA ++ + +   +      +H+      L+ V  +G
Sbjct: 505 KSISFARVLYGLGIRFVGKTVAQKLAVHFKTMEAIQK-----ASHD-----ELVAVEDIG 554

Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
             IA +++E +++  N+  +  L       ++ +P + +     S +++ K  V +GT Q
Sbjct: 555 GRIADSLIEHFKDTENLDVINRLKAAGLQFEDNTPVLQKD----SDKLDGKTFVVSGTFQ 610

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +  R + ++ +   G  V + +S+K D +I GD  G SKL+KA++L V +++E++F+ ++
Sbjct: 611 QFSRDEIKQKIEANGGKVVSSISKKLDYLIAGDKMGPSKLDKAKKLDVTMISEDEFVQMV 670


>gi|303254175|ref|ZP_07340287.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455]
 gi|302598846|gb|EFL65880.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455]
          Length = 652

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 218/685 (31%), Positives = 363/685 (52%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDCLYRELVELETAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  +    R
Sbjct: 76  LYSLQDAFSREELEAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILLAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I  +  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWDFIQEVGEERDNLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRISE-EKLDIPTNCPSCDSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F ++     ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAAD----LVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            L         K E+ L   G  + S + LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RL---------KEEDFLLLEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +++ S +N AQ           D   +  +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++ G + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646


>gi|313886637|ref|ZP_07820349.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923933|gb|EFR34730.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I]
          Length = 679

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 216/718 (30%), Positives = 365/718 (50%), Gaps = 68/718 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+  L   I  H+  YY  + P I D++YDAL +R   +    P+LA   DP  P  ++G
Sbjct: 9   EIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELA---DPTSPSLRVG 65

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            + N +  +V H  P LSL   +N +++ +   R        D   + +  E K DG+ I
Sbjct: 66  RDRNDAFVQVAHERPMLSLSNTYNYDEIAEICERTDTLLATDD---VPWVAEMKYDGSSI 122

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--LNIPEI----IEVRGEVYI 193
           ++ YE+G  V A  RGDG  G+DV+  +R I ++P  L      P+     IEVRGEV +
Sbjct: 123 SLIYEEGVLVRAVTRGDGTLGDDVTVNVRTIQSVPLRLRPVAGHPDYTMGRIEVRGEVLL 182

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEI 249
              +F  LN E  A G  P+ANPRNAA+G L+ LN   + +     + ++++ L   + +
Sbjct: 183 PFKEFERLNGERTAEGEAPFANPRNAAAGTLKTLNSRVVAQRRLLCICYYLYALDDEARL 242

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                YE ++ +  +GF       +++    +  Y +E    R  LPY  DG+V KVD  
Sbjct: 243 -PDSYYERMKLLEEMGFNTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGIVLKVDSL 301

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ LG  A+SPRW  ++K+  + A   LL +D Q+GR+G++TPVA +EPV I G ++ 
Sbjct: 302 TQQRTLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGVVTPVANVEPVLISGTVVR 361

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNE++IK L           D+   D V +++ GE+IPK+  +  + R P+++P  
Sbjct: 362 RATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVETSLRRPESEPVR 410

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C +  ++ ++   G     + C    AC  Q + R++H+ +R A +I  +G +
Sbjct: 411 LPERCPACGA-PLQQIDGSVG-----YYCVNSYACPPQIMGRIEHYCTRRAADI-NVGPE 463

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D  F        I    D++ L      + + +  +  F + S+ NL  SI + ++  
Sbjct: 464 TIDALFDRH----LIENIDDLYKL------TASDLAQLPNFKEKSINNLLASIEQSKSRP 513

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ +GIR+VG   A++LA+++ S    AQ  +            L  +P VG  IA
Sbjct: 514 FARLLYGIGIRYVGEGTAKTLARHFQSIDRLAQATD----------YELQALPDVGPKIA 563

Query: 610 QAIVEFYQNPRNI--------CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           + +V F+   RN         C V  L ++   +    + N+   +E +++V +G+  + 
Sbjct: 564 EQVVYFFSLERNQQLIAELQRCGV-ILEEQTEETTDAPQSNL---LEGERIVISGSFTQH 619

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            R + ++ + Q G V    +S +T  +++G + G SK  KA+QLG+ ++ EE+FL  L
Sbjct: 620 SRDEYKQLIEQHGGVNVGSISGRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLARL 677


>gi|225858927|ref|YP_002740437.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae 70585]
 gi|254781425|sp|C1C7B1|DNLJ_STRP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225720821|gb|ACO16675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 70585]
          Length = 652

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 218/683 (31%), Positives = 361/683 (52%), Gaps = 61/683 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+++  ++ +  IP  L+  +   I VRGE Y+ +  F  +N      G   +A
Sbjct: 131 GDGSIGENITENLKRVKDIPLTLTEELD--ITVRGECYMPRASFDQVNQARQENGEPEFA 188

Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN    
Sbjct: 189 NPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPKRI 246

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
            A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF  +
Sbjct: 247 LAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFPAE 306

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI             +
Sbjct: 307 EKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEK 355

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +       
Sbjct: 356 DIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE------ 408

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
            A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+ L
Sbjct: 409 VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIYRL 463

Query: 514 QRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           Q          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++ L
Sbjct: 464 QE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLL 514

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
            +Y+ S +N  Q  +  +A           +  +G +IA+++  ++    +   +   LK
Sbjct: 515 LQYFHSIENLYQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE-LK 563

Query: 631 EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           E   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD++
Sbjct: 564 ETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTDLV 623

Query: 689 IVGDNPGSKLEKAQQLGVKIMNE 711
           +VG + GSKL+KAQ+LG+++ +E
Sbjct: 624 VVGADAGSKLQKAQELGIQVRDE 646


>gi|149006206|ref|ZP_01829918.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74]
 gi|225856757|ref|YP_002738268.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae P1031]
 gi|307127352|ref|YP_003879383.1| NAD-dependent DNA ligase [Streptococcus pneumoniae 670-6B]
 gi|254781432|sp|C1CKI0|DNLJ_STRZP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147761983|gb|EDK68945.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74]
 gi|225725530|gb|ACO21382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae P1031]
 gi|306484414|gb|ADM91283.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 670-6B]
 gi|332075451|gb|EGI85920.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41301]
          Length = 652

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 362/685 (52%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N  Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQYFHSIENLYQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646


>gi|118617527|ref|YP_905859.1| NAD-dependent DNA ligase LigA [Mycobacterium ulcerans Agy99]
 gi|166216215|sp|A0PPW9|DNLJ_MYCUA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118569637|gb|ABL04388.1| DNA ligase [NAD dependent] LigA [Mycobacterium ulcerans Agy99]
          Length = 683

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 230/714 (32%), Positives = 366/714 (51%), Gaps = 55/714 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L +++  H   YY    P+I D+E+D L RR +A+   +P+L     P+ P   +
Sbjct: 3   RQWQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPEL---RTPDSPTQLV 59

Query: 79  GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG    + F+ V H    LSL+  +N E+L  +  RI+        +S  +  E KIDG 
Sbjct: 60  GGAGFATEFEPVEHLERMLSLDNAFNTEELTAWAGRIH----ADVGDSAAYLCELKIDGV 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            +++ YE G+   A+ RGDG +GEDV+   R I  +P  LS +    +PE++EVRGEV+ 
Sbjct: 116 ALSLVYEGGRLTRASTRGDGRTGEDVTLNARTIEDVPERLSHSEDHRMPEVLEVRGEVFF 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG T      
Sbjct: 176 RVADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTEGFRPA 235

Query: 253 GQYEMLQKMRCLGFPVNNG---VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             ++    ++  G PV+     V         + Y+ E    R  + ++IDG+V KVD+ 
Sbjct: 236 TLHQAYLALQAWGLPVSQHTTLVADLAEVQARIDYWGEH---RHEVDHEIDGVVVKVDDV 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ + 
Sbjct: 293 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVA 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +K         R G  + +GD V++++AG+VIP+V+  +V+ R    + F 
Sbjct: 353 QATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFV 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +  +   K G   A  RC    +C  Q  ER+ H  SR+A +IE LG  
Sbjct: 402 MPTTCPECGTPLAPE---KEGD--ADIRCPNTRSCPGQLRERVFHVSSRNALDIEMLG-- 454

Query: 490 QLDFFFKSEDPAFSIRI---PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
                +++     S R+     D+F L   +   T       G    +   L  +++K +
Sbjct: 455 -----YEAGAALLSARVIGDEGDLFGLTEEELLRTDLFRTKAGDLSANGRRLLANLDKAK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L R + +L IRHVG   AR+LA  + S       I+ I+A   +    L  V  VG 
Sbjct: 510 AAPLWRVLVALSIRHVGPTAARALATEFGS-------IDAIVAATTE---QLAAVEGVGP 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            IA A+ E++    +   VE             + +V   +    +V TG+L    R +A
Sbjct: 560 TIASAVSEWFTVDWHREIVERWRAAGVRMADERDDSVPRTLAGVTVVVTGSLPGFSRDEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +E +   G   +  +S+KT  ++ GD PGSK +KA +LGV I++E+ F  LL+Q
Sbjct: 620 KEAIVTRGGKAAGSVSKKTSYVVAGDAPGSKYDKAVELGVPILDEDGFRKLLEQ 673


>gi|254383201|ref|ZP_04998554.1| DNA ligase [Streptomyces sp. Mg1]
 gi|194342099|gb|EDX23065.1| DNA ligase [Streptomyces sp. Mg1]
          Length = 736

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 225/737 (30%), Positives = 365/737 (49%), Gaps = 71/737 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++ + L +++  H   YY   +P++ D+E+D L R  +A+   +P L     P+ P  K
Sbjct: 18  REQHALLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRSLEALEEQYPQL---RTPDSPTQK 74

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           + G        V H    LSL+  ++ E+L  +  R+ R     D     +  E K+DG 
Sbjct: 75  VAGAYETDFASVQHRERMLSLDNAFDDEELAAWAERVARDANTSD---YHYLCELKVDGL 131

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            + + YE G+   AA RGDG +GED++  +R I  IP R+    IP ++E+RGEV+    
Sbjct: 132 AVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGDRIPALVEIRGEVFFPME 191

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN  ++    KP+ANPRNAA+G LR+ +P    +R L+  VHG+G           
Sbjct: 192 KFEELNARLVETEGKPFANPRNAAAGSLRQKDPKITASRPLHMVVHGIGAREGFDIDKLS 251

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
              + +R  G P     R  ++   +  +       R ++ ++IDG+V K+DE  LQ +L
Sbjct: 252 HAYELLREWGLPTARHNRVVSSLAEVREFITHFGENRHSVEHEIDGVVVKLDEIPLQGRL 311

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  ATLHN
Sbjct: 312 GSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFATLHN 371

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ++ +K            + + +GD V++++AG+VIP+++  +V+ R    + F  P+ CP
Sbjct: 372 QEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAECP 420

Query: 436 ICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
            C +     L P K G +    RC  G  C AQ  ERL +   R   +IE  G       
Sbjct: 421 ECGT----PLRPMKEGDI--DLRCPNGQTCPAQLRERLFYLGGRQCLDIENFGAVAAAAL 474

Query: 495 FKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTKIENIL----G 529
               +PA   +R   D+F L                    +R  +T   KI  +     G
Sbjct: 475 TNPLEPAEPPLRDEGDLFGLTIEDLLPIKAYVLDGDSGLPKRDPKTGEEKIVTVFANQKG 534

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
               +   + ++I   +   L R I  L IRHVG   A +LA+ + S +   Q     +A
Sbjct: 535 EPKKNALAMLENIAAAKERPLARVINGLSIRHVGPVAAEALAREFRSIERIEQATEEELA 594

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--- 646
             +           VG IIA ++ E++     +   + +L++   +  R E+  S E   
Sbjct: 595 ATDG----------VGAIIAASLKEWFA----VDWHQEILRKWREAGVRMEEEGSGEEEG 640

Query: 647 ---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q
Sbjct: 641 PRPLEGLTVVVTGTLESHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAVQ 700

Query: 704 LGVKIMNEEQFLFLLQQ 720
           L + I+++  F  LL+Q
Sbjct: 701 LKLAILDDAGFAVLLEQ 717


>gi|291454298|ref|ZP_06593688.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
 gi|291357247|gb|EFE84149.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
          Length = 736

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 222/739 (30%), Positives = 358/739 (48%), Gaps = 73/739 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+    L +++  H   YY   +P++ D+E+D   R    +   +P L     P+ P  
Sbjct: 22  ARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPL---RTPDSPTQ 78

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+ G+       V H    LSL+  ++ E+L  +  R+ +   +       F  E K+DG
Sbjct: 79  KVAGQYETEFTSVQHRERMLSLDNAFDDEELAAWAERVAK---EVGAPGYHFLCELKVDG 135

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             + + YE G+   AA RGDG  GED++  +R I  IP R+   ++P ++E+RGEV+   
Sbjct: 136 LAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTISDIPERLHGDDLPALVEIRGEVFFPM 195

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
            +F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G          
Sbjct: 196 EEFEKLNARLVEAGEKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREGFTIDCL 255

Query: 255 YEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                 +R  G P    N  V   +     ++YY +    R ++ ++IDG+V K+DE  L
Sbjct: 256 SHAYDLLRSWGLPTARHNKVVEGLDGVRAFITYYGDH---RHSVEHEIDGVVVKLDEVPL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PRW I+ K+  ++ ++RL+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 313 QGRLGSTSRAPRWAIAWKYPPEEVNSRLIDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D ++            + + +GD V++++AG+VIP+++  + + R    +PF+ P
Sbjct: 373 TLHNQDVVR-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGTERPFTMP 421

Query: 432 SFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG--- 487
           + CP C +     L P K G +    RC    +C AQ  ER+ +   R   +IE  G   
Sbjct: 422 AECPECST----PLKPMKEGDIDL--RCPNARSCPAQLRERIYYLAGRKCLDIENFGYVA 475

Query: 488 ---------------KQQLDFFFKSEDPAFSIR---IPADIFTLQRRQQTSTTKI----E 525
                          + + D F  + D    IR   +  D    +R  +T   KI     
Sbjct: 476 ATALTQPLEPSEPPLRDEGDLFDLTVDQLLPIRSYVLDPDSGLPKRDPKTGEEKIVTFFA 535

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   + D I   +   L R +  L IRHVG   A++LA+ + S +       
Sbjct: 536 NKQGEAKKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATE 595

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEK 641
             +A              VG  IA ++  ++    +   V    EA ++    S G  E 
Sbjct: 596 EELAQTEG----------VGPTIAASLKSWFAEEWHREIVRKWREAGVRMEEESTGEDEG 645

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
                +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA
Sbjct: 646 --PRPLEGLTVVVTGTLEHHTRDNAKEALQNQGAKVTGSVSKKTSFVVVGDNPGSKYDKA 703

Query: 702 QQLGVKIMNEEQFLFLLQQ 720
            Q  V +++E  F  LL Q
Sbjct: 704 MQAKVPVLDEAGFAVLLDQ 722


>gi|260887264|ref|ZP_05898527.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
 gi|330838979|ref|YP_004413559.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
 gi|260863326|gb|EEX77826.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
 gi|329746743|gb|AEC00100.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
          Length = 669

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 222/714 (31%), Positives = 374/714 (52%), Gaps = 55/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I++ +KEL+ L + I +H+  YY    P I D EYD L  +  A+   +P+L      
Sbjct: 1   MDIQEVKKELAQLRRTIRHHNVRYYNDDNPEISDYEYDQLMLQLKALEREYPELITE--- 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           N P  K+GG    +    V H +P LSL+ +++ E++  F+    R  + + +N +F  +
Sbjct: 58  NSPTQKVGGTAKRTAGTLVRHDVPMLSLQDVFSREEIEAFV----RDIEARMENPVF-VV 112

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           E KIDG  + +RYE G    A  RGDG   GEDV+   + I  + + L   +P   EVRG
Sbjct: 113 EEKIDGLSLALRYENGTLSRAITRGDGIVQGEDVTENAKVIKDVVQKLKEPLP-YFEVRG 171

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247
           EVY++K  F A+N+    +G K +ANPRN A+G LR+L+ + IT  R L+ FV  L    
Sbjct: 172 EVYMTKAAFEAVNERRQLIGLKLFANPRNCAAGTLRQLD-SRITKERGLSLFVFNLQAVR 230

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +   E    M   G  V +      T   +     ++ + R  LPYDIDG V K++
Sbjct: 231 GKDFQTHVEAYDFMNRQGIKVIHAFHVCRTAEEVWDAIEQIGASRGDLPYDIDGAVVKLN 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +FS ++ LG  +++PRW I++K+  ++  + +  I + +GRTG +TP A  +P+ + G  
Sbjct: 291 DFSQRESLGATSKAPRWAIAYKYPPEEKESVVRSITLSVGRTGRITPTATFDPIRLCGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN+D+I  L           D+RVGD V+V ++GE+IPK+  ++  +R    +P
Sbjct: 351 VERATLHNQDFIDDL-----------DVRVGDTVVVYKSGEIIPKIKAVVKEKRPEGTEP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F     CP+C ++  R+ +    K +         AC AQ    + +FVSRDA +I+GLG
Sbjct: 400 FKIGDRCPVCGAKAEREADSADVKCI-------NQACPAQVESHILNFVSRDAMDIKGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +       +  F +    DIF L+  ++   +  + ++G  + +   L  +I + + 
Sbjct: 453 EKNIAALI---EKGF-LHTIVDIFRLKEHREELIS--QGVVG-KEKNTDKLLAAIEEAKK 505

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              +R +  LGI  +G   A +L +++ + +          A  N    +++ V  +G+ 
Sbjct: 506 NEPQRLLTGLGIPGIGKAAAAALMQHFKTLE----------ALENASDEAILAVRDMGET 555

Query: 608 IAQAIVEFYQNPRN--ICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
              AI  ++QN  N  IC     L+++  +    E+     E+ +   V TGTL+   R 
Sbjct: 556 SVAAIRSYFQNEGNAKICRE---LQQLGVATAVQERAAQGDELADMSFVVTGTLRHFGRR 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  E + Q G  V++ +S+KTD ++ G+N GSKL+KA+QLG++I+ EE+FL L+
Sbjct: 613 EITELIEQHGGRVTSSVSKKTDCLVAGENAGSKLQKAEQLGIRILTEEEFLQLI 666


>gi|302522063|ref|ZP_07274405.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78]
 gi|302430958|gb|EFL02774.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78]
          Length = 783

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 232/752 (30%), Positives = 373/752 (49%), Gaps = 83/752 (11%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           EA      R+E   + +E+  H   YY   +P++ D+++D L RR  A+    P L    
Sbjct: 29  EAAVPADVREEHDGIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---R 85

Query: 70  DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            P+ P  K+ G+         V H    LSL+ +++ E L  +  R+ +   +       
Sbjct: 86  TPDSPTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAK---EIGAPGYH 142

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           +  E K+DG  + + YE G+   AA RGDG  GED++  +R I  IP  L+ + +PE++E
Sbjct: 143 YLCELKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVE 202

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           VRGEVY    DF ALN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G 
Sbjct: 203 VRGEVYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG- 261

Query: 246 TSEIFA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             E F        YE+L +    G P     +  ++  G+ S+       R ++ ++IDG
Sbjct: 262 AREGFTIDRLSHAYELLHEW---GLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDG 318

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K+DE  LQ +LG  +R+PRW  + KF  ++ +T+L+DI + +GRTG +TP A +EP+
Sbjct: 319 VVVKLDEIPLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPI 378

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R
Sbjct: 379 VVAGSEVEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLR 427

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                 F  P+ CP C +  +R +  K G +    RC    +C AQ  ER+ +   R + 
Sbjct: 428 DGSEHAFVMPAECPECGT-PLRAM--KEGDI--DLRCPNARSCPAQLRERIFYLAGRKSL 482

Query: 482 NIEGLG---KQQLDFFFKSEDPAFSIRIPADIFTL--------------------QRRQQ 518
           +IE LG      L    +  DP   +R   D+F L                    +R   
Sbjct: 483 DIEHLGYVAATALTQPIEPSDP--PVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPA 540

Query: 519 TSTTKI----ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
           +   KI     N  G    +  ++ ++I   +   L + +  L IRHVG   A +LA+ +
Sbjct: 541 SGEEKIVTFFANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREF 600

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
            S       I+ I A    +   L     VG  IA ++ ++Y+   +      +L+    
Sbjct: 601 RS-------IDRIFAAEESE---LAETEGVGPTIAASLKQWYEEDWH----REILRRWKA 646

Query: 635 SIGRHEKNVSS------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           +  R E   S        +E   +V TGTL++  R  A+E +   GA V+  +S+KT  +
Sbjct: 647 AGVRMEAAESETDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFV 706

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +VGDNPGSK +KA  L V ++ E+ F  LLQ+
Sbjct: 707 VVGDNPGSKYDKALSLKVPVLEEDGFAILLQE 738


>gi|24379931|ref|NP_721886.1| NAD-dependent DNA ligase LigA [Streptococcus mutans UA159]
 gi|81451132|sp|Q8DT49|DNLJ_STRMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24377912|gb|AAN59192.1|AE014986_3 DNA ligase [Streptococcus mutans UA159]
          Length = 652

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 230/707 (32%), Positives = 365/707 (51%), Gaps = 75/707 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED--PNGPL 75
           ++ ++ L Q ++ +   YY    P + D+EYD L R    +   FP     ED  PN P 
Sbjct: 2   KERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFP-----EDILPNSPT 56

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +++G  +     K  H  P  SL+  ++ E+L  F  RI   + + D     +  E KID
Sbjct: 57  HRVGDLVLDGFEKYRHEYPLFSLQDAFSREELDAFDRRIKAEFPQAD-----YLAELKID 111

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYI 193
           G  I++ Y  G+    A RGDG  GE+++  ++ +  IP    L++PE I+  VRGE Y+
Sbjct: 112 GLSISLTYVNGRLRVGATRGDGTVGENITENLKRVRDIP----LHLPENIDLTVRGECYL 167

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFA 251
            K  F  +N E    G   +ANPRNAA+G LR+L+   + +     F     G T+   A
Sbjct: 168 PKASFKTINAERRENGETEFANPRNAAAGTLRQLDTKVVAKRKLATFIYQEAGPTA---A 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q  +L+    LGF VN     +++   I  +  ++   R+ L YDIDG+V KV+  +L
Sbjct: 225 SSQEAVLESFAKLGFTVNPRHIISSSMDAIWQFIEDVAKERAELAYDIDGVVIKVNSLAL 284

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG   ++PRW I++KF  ++ +  +L +D  +GRTG++TP A L PV + G  ++ A
Sbjct: 285 QEALGFTVKAPRWAIAYKFPAEEKTAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRA 344

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSF 430
           TLHN DYI             +DIR+GD V+V +AG++IP V+ ++ N+R  D Q P   
Sbjct: 345 TLHNVDYI-----------AEKDIRIGDIVVVYKAGDIIPAVLHVVENKR--DQQVPLPI 391

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP CQS ++   +        A RC     C AQ  E+L HF SRDA NI GLG   
Sbjct: 392 PTVCPSCQSELIHFEDE------VALRCVNP-RCPAQLKEKLIHFASRDAMNIIGLGPAI 444

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F +E     I   ADI+      Q +   +  + G  + S T LY +I   +  S 
Sbjct: 445 VEKLFTAE----LICDVADIY------QLTPENLMQLEGIKEKSATKLYKAIQASKANSA 494

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVG++ +R L + + S +  A    + IA  +           +G +IA+
Sbjct: 495 EKLLFGLGIRHVGSKASRLLMERFESLEQLAAADFDDIAAIDG----------LGIVIAE 544

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           ++  ++         + LL E+  +      +G+   +  + +    +V TG L  + R 
Sbjct: 545 SLKTYFAT----AGAQKLLIELKTAGLNLTYLGKKTAS-DAALTGMTIVLTGKLANLTRS 599

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +A+E +  LGA V+  +S+KT ++I G + GSKLEKA+ LG++I +E
Sbjct: 600 QAKEKLQSLGANVAGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDE 646


>gi|15903068|ref|NP_358618.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae R6]
 gi|116516470|ref|YP_816476.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae D39]
 gi|81449679|sp|Q8DPS9|DNLJ_STRR6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|122278638|sp|Q04KH2|DNLJ_STRP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15458641|gb|AAK99828.1| DNA ligase [Streptococcus pneumoniae R6]
 gi|116077046|gb|ABJ54766.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae D39]
          Length = 652

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 362/685 (52%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N  Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQYFHSIENLYQADSEEVAS----------IESLGGVIAKSLQTYFAAEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646


>gi|148925946|ref|ZP_01809633.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844932|gb|EDK22036.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 647

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 224/689 (32%), Positives = 364/689 (52%), Gaps = 64/689 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYDAL R        F +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDALIRELSV----FEEQNKDEISKDSPTQKIAPIIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L ++W++ED+  F     R W K+      F +EPK DG  + + YE GK V  A 
Sbjct: 74  ----LRRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++   E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  G+G+ +  F K   E++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           VR       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG   + P++M + KF 
Sbjct: 244 VRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +    R       S P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+   +C   + C  + +  + HFVS+   NI+GLG+  ++  +K +           I 
Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+       +  E + GF +  + NL ++I + R   L RFI +LGI H+G   A+ L+
Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
                  +F +E       +   + +   +   G+ +A ++ EF +   N   ++   K 
Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTR--VNHTRIDEFYKL 559

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++  I + E    S I  K  V TGTL +  R + +  + +LG  VS  +S+KTD ++ G
Sbjct: 560 LNLKIEKLEIKSDSMIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  GSKL KA++L VK +NE  F  L+++
Sbjct: 619 EEAGSKLSKAKELEVKCINESAFNELVKE 647


>gi|326776439|ref|ZP_08235704.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
 gi|326656772|gb|EGE41618.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
          Length = 743

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 217/734 (29%), Positives = 365/734 (49%), Gaps = 65/734 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++ + L ++I  H   YY   +P++ D+++D   R  +A+    P L     P+ P  K
Sbjct: 18  REKHALLAEQIEEHRFRYYVKDQPVVSDADFDRQLRSLEALEEEHPSL---RTPDSPTQK 74

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           + G        V H    LSL+  ++ E+L  +  R+ +     D +   F  E K+DG 
Sbjct: 75  VAGPYRTEFTSVEHRERMLSLDNAFDDEELAAWADRVAKDVGTPDHH---FLCELKVDGL 131

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            + + YE G+   AA RGDG +GED++  +R I  IP R+   +IP ++E+RGEV+    
Sbjct: 132 AVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALVEIRGEVFFPME 191

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255
           DF  LN  ++A   KP+ANPRNAA+G LR+ +P    TR L+  VHG+G    +      
Sbjct: 192 DFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAHEGLSIDRLS 251

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
                +   G P     +  ++  G+  +       R ++ ++IDG+V K+DE  LQ +L
Sbjct: 252 AAYDLLHAWGLPTARHNKVVDSLAGVREFIAHYGENRHSVEHEIDGVVVKLDEIPLQGRL 311

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  ATLHN
Sbjct: 312 GSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFATLHN 371

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ++ +K            + + +GD V++++AGEVIP+++  +V+ R    + F  P+ CP
Sbjct: 372 QNVVK-----------AKGVLIGDTVVIRKAGEVIPEILGPVVDLRDGTEKAFEMPTHCP 420

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C +  +R +      L    RC     C AQ  ER+ +   R + +I+  G        
Sbjct: 421 ECGTE-LRPMKEADIDL----RCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAAAALT 475

Query: 496 KSEDPAFSI-RIPADIFTL--------------------QRRQQTSTTKIENIL----GF 530
           +  +PA  + +  +D+F+L                    +R  +T   KI  +     G 
Sbjct: 476 RPLEPAEPVLKDESDLFSLTVEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQGE 535

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              +   + + I   ++  L R +  L IRHVG   A+ LA+ + S +   +     +A 
Sbjct: 536 PKKNAVAMLEGIAAAKDAPLARVLTGLSIRHVGPVAAQELARQFRSIERIDEATEEELAA 595

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSE 646
            +           VG  IA ++ +++    +   V    EA ++      G  E      
Sbjct: 596 ADG----------VGPTIAASVKQWFAEDWHREIVRKWREAGVRMADE--GSDEDEGPRP 643

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E   +V TGTL    R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +KA QL V
Sbjct: 644 LEGLTVVVTGTLAGHTRDGAKEALQALGAKVAGSVSKKTAFVVVGDNPGSKYDKAMQLKV 703

Query: 707 KIMNEEQFLFLLQQ 720
            +++E+ F  LL+Q
Sbjct: 704 PVLDEDGFAILLEQ 717


>gi|302542307|ref|ZP_07294649.1| DNA ligase, NAD-dependent [Streptomyces hygroscopicus ATCC 53653]
 gi|302459925|gb|EFL23018.1| DNA ligase, NAD-dependent [Streptomyces himastatinicus ATCC 53653]
          Length = 740

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 228/742 (30%), Positives = 375/742 (50%), Gaps = 76/742 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR E + L +++  H   YY    PI+ D+E+D L RR +A+    P+L     P+ P 
Sbjct: 12  EARDEHAKLAEQVEEHRFRYYVKDAPIVSDAEFDRLLRRLEALEEDHPEL---RTPDSPT 68

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G       +V H    LSL+  ++ ++L  +  RI +   +    +  F  E K+D
Sbjct: 69  QKVAGAYETEFTEVEHRERMLSLDNAFDDDELGTWADRIAK---ELGTGAYHFLCELKVD 125

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G+   AA RGDG +GED++  +R I  IP R+    +P ++EVRGEV++ 
Sbjct: 126 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLTGDRVPALVEVRGEVFLP 185

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFA 251
           +  F  LN  ++   + P+ANPRNAA+G LR+ +P    +R L+  VHG+G     +I  
Sbjct: 186 RKAFEELNARLVEAEKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGAREGFDIAR 245

Query: 252 KGQ-YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307
             Q YE+L +    G P     R  +T  G+   +++Y + +  R ++ ++IDG V K+D
Sbjct: 246 LSQAYELLHEW---GLPTAAHFRVVDTIEGVREYIAHYGDSEH-RHSVEHEIDGAVIKLD 301

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E  LQ +LG  +R+PRW I+ KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G+ 
Sbjct: 302 EIPLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGSE 361

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + 
Sbjct: 362 VEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSERE 410

Query: 428 FSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           F  P+ CP C +     L P K G +    RC    +C AQ  ER+ +   R + +IE L
Sbjct: 411 FVMPAECPECGT----PLQPAKEGDV--DLRCPNSRSCPAQLRERIFYLAGRKSLDIENL 464

Query: 487 GKQQLDFFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTKIE 525
           G        +  +PA   +R   D+F L                    +R  +T   K+ 
Sbjct: 465 GYVAAAALTQPLEPAEPPLRDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEEKVV 524

Query: 526 NIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G    +   +  +I   +   L R I  L IRHVG   A +LA+ + S    A
Sbjct: 525 TFFATQKGEAKKNALAMLANIEAAKQRPLARIITGLSIRHVGPVAAAALAREFRSLDRIA 584

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK---EVSPSIGR 638
           +     +A              VG IIA ++ +++    +   VE   +    +    G 
Sbjct: 585 EADEEELAATEG----------VGGIIAASVKQWFAVDWHREIVEKWRRAGVRLEEEAGA 634

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E  +   ++   +V TGTL+   R  A+E +   GA V+  +S+KTD ++VGDNPGSK 
Sbjct: 635 DEGPLP--LKGLTVVVTGTLESHTRDGAKEALQNRGAKVTGSVSKKTDFVVVGDNPGSKY 692

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
           +KA QL V +++++ F  LL+Q
Sbjct: 693 DKAMQLKVPVLDDDGFAVLLEQ 714


>gi|157414868|ref|YP_001482124.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           81116]
 gi|190359240|sp|A8FL10|DNLJ_CAMJ8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157385832|gb|ABV52147.1| DNA ligase [Campylobacter jejuni subsp. jejuni 81116]
 gi|315931784|gb|EFV10739.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 327]
          Length = 647

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 222/689 (32%), Positives = 365/689 (52%), Gaps = 64/689 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYDAL R       AF +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDALIREL----RAFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L+++W++ED+  F    +R W K+      F +EPK DG  + + YE GK V  A 
Sbjct: 74  ----LKRMWSMEDV--FDESEFRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++   E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  GLG+ +  F K   E++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGLGENTLNFTK-HSEVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           VR       ++  Y+E+ ++R   P  +DG+V ++D+ +L ++LG   + P++M + KF 
Sbjct: 244 VRLCVNLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +    R       S P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+   +C   + C  + +  + HFVS+   NI+GLG+  ++  +K +           I 
Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+          E + GF +  + NL ++I + R   L RFI +LGI H+G   A+ L+
Sbjct: 454 TLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
                  +F +E       +   + +   +   G+ +A ++ EF +  R    ++   K 
Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTRVNRT--RIDEFYKL 559

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++  I + E      I  K  V TGTL +  R + +  + +LG  VS  +S+KTD ++ G
Sbjct: 560 LNLKIEKLEIKSDGVIFGKTFVITGTLSR-SRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  GSKL KA++L +K ++E  F  L+++
Sbjct: 619 EEAGSKLIKAKELEIKCIDESAFNELVKE 647


>gi|148986045|ref|ZP_01819066.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71]
 gi|147921879|gb|EDK73005.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71]
 gi|301800082|emb|CBW32679.1| DNA ligase [Streptococcus pneumoniae OXC141]
          Length = 652

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 362/685 (52%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDKIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N  Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQYFHSIENLYQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646


>gi|148998387|ref|ZP_01825829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70]
 gi|168576158|ref|ZP_02722052.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016]
 gi|194398076|ref|YP_002037745.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae G54]
 gi|225861080|ref|YP_002742589.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230922|ref|ZP_06964603.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254162|ref|ZP_06977748.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502866|ref|YP_003724806.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A]
 gi|254781424|sp|B5E4M9|DNLJ_STRP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781433|sp|C1CRL7|DNLJ_STRZT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147755784|gb|EDK62829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70]
 gi|183577935|gb|EDT98463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016]
 gi|194357743|gb|ACF56191.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae G54]
 gi|225727034|gb|ACO22885.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238461|gb|ADI69592.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A]
 gi|327389325|gb|EGE87670.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA04375]
 gi|332075071|gb|EGI85542.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17545]
          Length = 652

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 362/685 (52%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N  Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQYFHSIENLYQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646


>gi|307067701|ref|YP_003876667.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus pneumoniae AP200]
 gi|306409238|gb|ADM84665.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus pneumoniae AP200]
          Length = 648

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 362/685 (52%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 15  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 71

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 72  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 126

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 127 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 182

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 183 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 240

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 241 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 300

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 301 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 349

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 350 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 404

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 405 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 457

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 458 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 508

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N  Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 509 LLLQYFHSIENLYQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 557

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 558 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 617

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 618 LVVVGADAGSKLQKAQELGIQVRDE 642


>gi|239982451|ref|ZP_04704975.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
          Length = 728

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 222/739 (30%), Positives = 358/739 (48%), Gaps = 73/739 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+    L +++  H   YY   +P++ D+E+D   R    +   +P L     P+ P  
Sbjct: 14  ARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPL---RTPDSPTQ 70

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+ G+       V H    LSL+  ++ E+L  +  R+ +   +       F  E K+DG
Sbjct: 71  KVAGQYETEFTSVQHRERMLSLDNAFDDEELAAWAERVAK---EVGAPGYHFLCELKVDG 127

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             + + YE G+   AA RGDG  GED++  +R I  IP R+   ++P ++E+RGEV+   
Sbjct: 128 LAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTISDIPERLHGDDLPALVEIRGEVFFPM 187

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
            +F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G          
Sbjct: 188 EEFEKLNARLVEAGEKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREGFTIDCL 247

Query: 255 YEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                 +R  G P    N  V   +     ++YY +    R ++ ++IDG+V K+DE  L
Sbjct: 248 SHAYDLLRSWGLPTARHNKVVEGLDGVRAFITYYGDH---RHSVEHEIDGVVVKLDEVPL 304

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PRW I+ K+  ++ ++RL+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 305 QGRLGSTSRAPRWAIAWKYPPEEVNSRLIDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 364

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D ++            + + +GD V++++AG+VIP+++  + + R    +PF+ P
Sbjct: 365 TLHNQDVVR-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGTERPFTMP 413

Query: 432 SFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG--- 487
           + CP C +     L P K G +    RC    +C AQ  ER+ +   R   +IE  G   
Sbjct: 414 AECPECST----PLKPMKEGDIDL--RCPNARSCPAQLRERIYYLAGRKCLDIENFGYVA 467

Query: 488 ---------------KQQLDFFFKSEDPAFSIR---IPADIFTLQRRQQTSTTKI----E 525
                          + + D F  + D    IR   +  D    +R  +T   KI     
Sbjct: 468 ATALTQPLEPSEPPLRDEGDLFDLTVDQLLPIRSYVLDPDSGLPKRDPKTGEEKIVTFFA 527

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   + D I   +   L R +  L IRHVG   A++LA+ + S +       
Sbjct: 528 NKQGEAKKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATE 587

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEK 641
             +A              VG  IA ++  ++    +   V    EA ++    S G  E 
Sbjct: 588 EELAQTEG----------VGPTIAASLKSWFAEEWHREIVRKWREAGVRMEEESTGEDEG 637

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
                +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA
Sbjct: 638 --PRPLEGLTVVVTGTLEHHTRDNAKEALQNQGAKVTGSVSKKTSFVVVGDNPGSKYDKA 695

Query: 702 QQLGVKIMNEEQFLFLLQQ 720
            Q  V +++E  F  LL Q
Sbjct: 696 MQAKVPVLDEAGFAVLLDQ 714


>gi|182435814|ref|YP_001823533.1| NAD-dependent DNA ligase LigA [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|254778153|sp|B1VZW1|DNLJ2_STRGG RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|178464330|dbj|BAG18850.1| putative DNA ligase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 743

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 217/734 (29%), Positives = 365/734 (49%), Gaps = 65/734 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++ + L ++I  H   YY   +P++ D+++D   R  +A+    P L     P+ P  K
Sbjct: 18  REKHALLAEQIEEHRFRYYVKDQPVVSDADFDRQLRSLEALEEEHPSL---RTPDSPTQK 74

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           + G        V H    LSL+  ++ E+L  +  R+ +     D +   F  E K+DG 
Sbjct: 75  VAGPYRTEFTSVEHRERMLSLDNAFDDEELAAWADRVAKDVGTPDHH---FLCELKVDGL 131

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            + + YE G+   AA RGDG +GED++  +R I  IP R+   +IP ++E+RGEV+    
Sbjct: 132 AVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALVEIRGEVFFPME 191

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255
           DF  LN  ++A   KP+ANPRNAA+G LR+ +P    TR L+  VHG+G    +      
Sbjct: 192 DFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAHEGLSIDRLS 251

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
                +   G P     +  ++  G+  +       R ++ ++IDG+V K+DE  LQ +L
Sbjct: 252 AAYDLLHTWGLPTARHNKVVDSLAGVREFIAHYGENRHSVEHEIDGVVVKLDEIPLQGRL 311

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  ATLHN
Sbjct: 312 GSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFATLHN 371

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ++ +K            + + +GD V++++AGEVIP+++  +V+ R    + F  P+ CP
Sbjct: 372 QNVVK-----------AKGVLIGDTVVIRKAGEVIPEILGPVVDLRDGTEKAFEMPTHCP 420

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C +  +R +      L    RC     C AQ  ER+ +   R + +I+  G        
Sbjct: 421 ECGTE-LRPMKEADIDL----RCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAAAALT 475

Query: 496 KSEDPAFSI-RIPADIFTL--------------------QRRQQTSTTKIENIL----GF 530
           +  +PA  + +  +D+F+L                    +R  +T   KI  +     G 
Sbjct: 476 RPLEPAEPVLKDESDLFSLTVEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQGE 535

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              +   + + I   ++  L R +  L IRHVG   A+ LA+ + S +   +     +A 
Sbjct: 536 PKKNAVAMLEGIAAAKDAPLARVLTGLSIRHVGPVAAQELARQFRSIERIDEATEEELAA 595

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSE 646
            +           VG  IA ++ +++    +   V    EA ++      G  E      
Sbjct: 596 ADG----------VGPTIAASVKQWFAEDWHREIVRKWREAGVRMADE--GSDEDEGPRP 643

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E   +V TGTL    R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +KA QL V
Sbjct: 644 LEGLTVVVTGTLAGHTRDGAKEALQALGAKVAGSVSKKTAFVVVGDNPGSKYDKAMQLKV 703

Query: 707 KIMNEEQFLFLLQQ 720
            +++E+ F  LL+Q
Sbjct: 704 PVLDEDGFAILLEQ 717


>gi|205355436|ref|ZP_03222207.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346670|gb|EDZ33302.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 647

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 224/689 (32%), Positives = 365/689 (52%), Gaps = 64/689 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYDAL R       AF +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDALIREL----RAFEEQNKDEISKDSPTQKIAPIIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L+++W++ED+  F     R W K+      F +EPK DG  + + YE GK V  A 
Sbjct: 74  ----LKRMWSMEDV--FNEGELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++   E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T +T  R L F+  G+G+ +  F K   E++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSMTKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           VR       ++  Y+E+  +R   P  +DG+V +VD+ +L ++LG   + P++M + KF 
Sbjct: 244 VRLCANLDEVLKAYDELLVLREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +    R       S P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+   +C   + C  + +  + HFVS+   NI+GLG+  ++  +K +           I 
Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+       +  E + GF +  + NL ++I + R   L RFI +LGI H+G   A+ L+
Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
                  +F +E       +   + +   +   G+ +A ++ EF +   N   ++   K 
Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTR--VNHTRIDEFYKL 559

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++  I + E    S I  K  V TGTL +  R + +  + +LG  VS  +S+KTD ++ G
Sbjct: 560 LNLKIEKLEIKSDSMIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  GSKL KA++L VK +NE  F  L+++
Sbjct: 619 EEAGSKLSKAKELEVKCINESAFNELVKE 647


>gi|163757008|ref|ZP_02164114.1| DNA ligase [Kordia algicida OT-1]
 gi|161323012|gb|EDP94355.1| DNA ligase [Kordia algicida OT-1]
          Length = 665

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 217/706 (30%), Positives = 375/706 (53%), Gaps = 50/706 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +++L++L  E+  H+  YY      I D E+D   +    +    P+     DPN P  +
Sbjct: 5   QEKLTALRDELREHNYNYYVLDNATISDYEFDMKLKELQELEAKHPEF---HDPNSPTLR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++  +   + H     SL+  ++ EDL  +  RI +       +++ +T E K DG 
Sbjct: 62  VGGQITKNFNTIAHEYRMYSLDNSYSKEDLLDWEKRIEKILGV---STVEYTCELKYDGA 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK + A  RGDG  G++V+  I+ I T+P  L  + P   ++RGE+ +  + 
Sbjct: 119 SMNLTYENGKLIKAVTRGDGFQGDEVTNNIKTIKTVPLQLKGDYPPKFDIRGEIILPLDG 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E +A G  PY NPRN ASG L+  + +++  R L   ++ + K   +    Q+E
Sbjct: 179 FKKMNEERVANGEDPYMNPRNTASGSLKLQDSSEVAKRPLECLLYNI-KGERLPIATQFE 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V    + A     I+ + N  ++ R  L Y+IDG+V KV+    Q++LG
Sbjct: 238 SLEKAREWGFKVPTVAKVAKNVDEILQFVNYWEANRHELKYEIDGVVIKVNNLQYQEELG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW +++KF  +Q +T L +I  Q+GRTG +TPVA L+PV + G  +  A+LHN 
Sbjct: 298 YTSKAPRWAMAYKFKAEQVATVLNEITYQVGRTGAITPVANLQPVLLAGTTVKRASLHNA 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           DIR  D V V++ GE+IPK+V +  + R  D+    + + CP 
Sbjct: 358 DQIAKL-----------DIRERDTVFVEKGGEIIPKIVGVNFDLRPEDSTETVYATECPE 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + + R    K G+  A H C     C+ Q + R++H++SR A +IEGLG + +    +
Sbjct: 407 CHTPLER----KEGE--AQHYCPNVAGCTPQIVGRIQHYISRKAMDIEGLGGETVALLVQ 460

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++ L      +T ++  +    + S  NL + I   + I  ER +++
Sbjct: 461 E----GLITNYADLYEL------TTAQVIPLERMAEKSAENLINGIEASKKIPFERVLYA 510

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LAK+Y S       I+ ++  +++D   L+ V  +G  IA+++ +F+
Sbjct: 511 LGIRYVGETVAKKLAKHYKS-------IDALMNASSND---LVNVDEIGVKIAESVAQFF 560

Query: 617 QNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
               N+  +E L K   ++  S  + E  ++  +  K  V +G  +K+ R++ ++ +   
Sbjct: 561 AEDVNLQMIERLKKFGVQLEFSAEQLE-GLTETLLGKSFVVSGVFEKVSRNELKKLIENN 619

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS+ +S KT  ++ GD  G SK EKA++L + I+ E++FL ++
Sbjct: 620 GGKVSSSISSKTSFVVAGDKMGPSKREKAEKLNIPIITEDEFLNMI 665


>gi|293365500|ref|ZP_06612209.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037]
 gi|307703456|ref|ZP_07640398.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037]
 gi|291315868|gb|EFE56312.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037]
 gi|307622863|gb|EFO01858.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037]
          Length = 652

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 217/682 (31%), Positives = 364/682 (53%), Gaps = 59/682 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+PD   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDCLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKFSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YE G  V  A R
Sbjct: 76  LYSLQDAFSREELEAFDARV-----RKEIPHPTYICELKIDGLSISLTYENGILVAGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLEHLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A +   +  +  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF 
Sbjct: 245 RILAQSIDEVWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S+++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDSQLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFA----ANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
              R ++     +E   G  + S + LY +I   +  S E+ +F LGIRHVG++ ++ L 
Sbjct: 462 ---RLKENDFLLLE---GVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLLL 515

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           +++ S +N AQ           D   +  +  +G +IAQ++  ++    +   ++  LKE
Sbjct: 516 QHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFATEGSKILLDE-LKE 564

Query: 632 VSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
              ++    + V ++  +    +V TG L+++ R +A+  +  LGA V+  +S+KT++++
Sbjct: 565 AGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKNKLEILGAKVTGSVSKKTNLVV 624

Query: 690 VGDNPGSKLEKAQQLGVKIMNE 711
            G + GSKL+KAQ+LG+++ +E
Sbjct: 625 AGADAGSKLQKAQELGIEVRDE 646


>gi|195867759|ref|ZP_03079760.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|195660614|gb|EDX53870.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
          Length = 673

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 223/714 (31%), Positives = 381/714 (53%), Gaps = 64/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD + R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQVMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130
           P  ++GG ++    KV H  P LSL   ++  DLRKF        Q   + S+    + +
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFD-------QDNQNASVDLKGYVV 110

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189
           EPKIDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRG
Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E
Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++ 
Sbjct: 230 LGIKTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINN 289

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +  ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++
Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIV 349

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+
Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
              + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+  
Sbjct: 399 ESITNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545
             ++ F+     A  I+  AD++ LQ+ ++    S  KI+      D S +NL +SIN  
Sbjct: 453 AIINKFY----DANLIKNVADLYYLQKHKEFILASDFKIK------DKSFSNLINSINNS 502

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SLE  + + GIRHVG  +A+ LAK + +           + H N D L+   V   G
Sbjct: 503 KTRSLEFLLTAFGIRHVGPNLAKKLAKQFKTMTT--------LMHANFDELT--NVDACG 552

Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           +  A +++ ++ +  NIC +  L      ++ +   I     N+  E +NK  V TG+  
Sbjct: 553 EKAALSLINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS 612

Query: 660 KIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            I R + +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+  E
Sbjct: 613 -ISRDEIKTILEKYYDAKVKNSVSKKTDYVLAGAEAGTKLEKAKSLGVKIIENE 665


>gi|227832930|ref|YP_002834637.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182581|ref|ZP_06042002.1| NAD-dependent DNA ligase LigA [Corynebacterium aurimucosum ATCC
           700975]
 gi|254781299|sp|C3PFU5|DNLJ_CORA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|227453946|gb|ACP32699.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975]
          Length = 674

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 216/713 (30%), Positives = 372/713 (52%), Gaps = 61/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E S L QE+  H + YY   +P I D+++D L +R  A+    P+L   + P+ P  +
Sbjct: 8   QREWSELAQEVRKHRELYYN-GEPSIPDADFDELFQRLLALEAEHPEL---QTPDSPTQQ 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     ++  + H     SL+ +++ E+L+ ++ R           +  +  E KIDG 
Sbjct: 64  VGAAPEGAV-DIEHLERLYSLDNVFSAEELQDWLDRT---------PAEAYLTELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193
            I + Y  GK V AA RGDG  GED++A  R IP IP  L+      +P ++EVRGEVY+
Sbjct: 114 SIDLVYRDGKLVTAATRGDGRVGEDITANARVIPDIPHELTGTDEYPVPSLVEVRGEVYM 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
             ++F  +N      G+  +ANPRNAA+G LR  +P D+  R L+   HG+G        
Sbjct: 174 RPDEFEEINAARREDGKPTFANPRNAAAGGLRMKDPEDVKKRRLHMVCHGIGARERFQPT 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q++  + +   GFPV+   ++  T   +   V+Y+ E    R    +++DGLV KVD+ 
Sbjct: 234 SQHDAYKALEAWGFPVSPYTQRVTTAKEVQERVTYWEEH---RHDAYFEMDGLVIKVDDL 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ LG  +R+PRW I++K+  ++ +T+LL+I++ +GRTG +TP A +EPV + G+ ++
Sbjct: 291 ASQRALGATSRAPRWAIAYKYPPEEVTTKLLNIEVGVGRTGRVTPFAIMEPVFVSGSTVS 350

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+  +K            +++ +GD +++++AGE+IP+V+  ++++R      + 
Sbjct: 351 MATLHNQFEVK-----------NKNVLIGDTIIIRKAGEIIPEVLGPVLDKRDGSETEWV 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP C +++      K G      RC    +C AQ   RL++  SR A +I  LG++
Sbjct: 400 FPENCPACGTKLAPQ---KEGD--QDWRCPNTRSCPAQLAARLEYLASRKALDIGELGEK 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                  S      +   AD+F L  +    ++      G  + S   L +++   R   
Sbjct: 455 AAADLISS----GVLEDEADLFDLDEQALLKSSVYTTQKGALNASGKKLLENLKTARQAE 510

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R + +L IRHVG   AR+LA  + S +         +A  +           VG IIA
Sbjct: 511 FWRVLVALSIRHVGPIAARALATRFGSMEVLRAASVEELADTDG----------VGTIIA 560

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKA 666
           ++  ++++   +   V+   K  +  +   E++    +  +E   +V TGTL+   R  A
Sbjct: 561 ESFKQWFEVDWHDNIVQ---KWTAAGVTMEEESSDKPAQTLEGITVVVTGTLENFTRDSA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   G   S+ +S+KT+ ++VG+N GSK +KA+ LG+ I++EE F  LL+
Sbjct: 618 KEAIITRGGKASSSVSKKTNYVVVGENAGSKEQKARDLGLTILDEEGFTRLLE 670


>gi|152992057|ref|YP_001357778.1| NAD-dependent DNA ligase LigA [Sulfurovum sp. NBC37-1]
 gi|166216278|sp|A6Q7G2|DNLJ_SULNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151423918|dbj|BAF71421.1| DNA ligase, NAD-dependent [Sulfurovum sp. NBC37-1]
          Length = 648

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 215/687 (31%), Positives = 365/687 (53%), Gaps = 59/687 (8%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P+  D EYD L           PD A  + P     ++GG +     K  H  
Sbjct: 19  AYYVEDNPVATDEEYDRLYHEVLDYEMKHPDKALEDSPT---KRVGGIVRDEFTKAKHIK 75

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
              S+E +++ E+++ ++ R+     +K+     +  EPK DG  + + Y+ GK + A  
Sbjct: 76  RMWSMEDVFSKEEVQDWLDRV-----EKNVGECDYFCEPKFDGASMNLLYDDGKLLRAIT 130

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GE+V+  +R I ++P  L ++   +IE+RGEV I K+DF  +N+E +  G  P+
Sbjct: 131 RGDGVVGEEVTDNVRTIRSVP--LVIDYKGLIEIRGEVVIRKDDFEQINEERLKAGEAPF 188

Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+ +    R L F+  G+G+ + +  K   E ++ +   GF      
Sbjct: 189 ANPRNAAAGSLRQLDSSVTAKRRLVFYPWGIGENT-LDQKKLSEKMEFIYGQGFLRPPYH 247

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
              +T   I  +Y  + S R  +P  +DG+V KVDE   Q++LG   + PRWM ++KF  
Sbjct: 248 EACHTIDNIEKFYQFLISKRDEIPMMMDGMVIKVDEIEKQEELGYTVKFPRWMCAYKFPA 307

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            +  T++  I +Q+GRTG++TPVA +EPVNI GA+++ ATLHN D I+            
Sbjct: 308 VEKVTQIRAITLQVGRTGVITPVAEIEPVNIEGAMVSRATLHNFDEIE-----------R 356

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           +DIR+GD V++ R+G+VIPK+  ++++ R  D  P   P+ CP C S ++ +     G L
Sbjct: 357 KDIRIGDHVIIIRSGDVIPKITKVLIDRRTGDEIPVERPTHCPTCGSELLDE-----GAL 411

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           +   +C   L C  + +  + HF  +   +I+GLG + ++   K       I    D+++
Sbjct: 412 I---KCQ-NLECPDRVINTIIHFAKKGCMDIDGLGSKIVEQLVKE----GKIHDILDLYS 463

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA- 571
           L      +   + ++ GF +  ++NL D+I   +   L R I ++GI H+G   +R+LA 
Sbjct: 464 L------TYEDLADLEGFKEKKISNLLDAIAASKGAPLHRLITAMGIEHIGEVASRALAL 517

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           ++ L   +   E  +I+A +            +G+ +A +++EF +  R    V  L   
Sbjct: 518 EFGLGIVDAKYE--DIVAIDG-----------IGEEMANSLLEFMRVNRE--KVLKLFNT 562

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           + P++ +  +   +  + K +V TGT+ +  R K +E + +LGA VS  +S+KTD +I G
Sbjct: 563 IKPTVEKKVEAKENPFKGKIVVLTGTMSE-SRGKIKEMLEELGAKVSGSVSKKTDFVIYG 621

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++ GSKL KA+ LGV  + E++   +L
Sbjct: 622 EDAGSKLTKAESLGVPTLTEDEMRAML 648


>gi|257467825|ref|ZP_05631921.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 688

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 238/731 (32%), Positives = 384/731 (52%), Gaps = 54/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK+ +L   E   +++ ++ +  L  ++  ++  YY  ++ +I D EYD L      +  
Sbjct: 1   MKEMKLNFFEENDMKKDKERIEKLRADLLKYNQYYYTNNESLISDVEYDMLMNELKELEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNL---SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF 117
            +P+      P      I G  NL      KVTH  P LSL   +N E++  FI RI R 
Sbjct: 61  KYPEYKSEASPT----VIVGASNLRENKFQKVTHKKPMLSLSNTYNEEEIGDFIDRIKRL 116

Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
             +++D  I + LE K+DG  I+I+YEKGK V    RGDG  GEDV+  I  I TIP   
Sbjct: 117 LPERED--IKYALELKLDGLSISIQYEKGKLVRGVTRGDGAIGEDVTENIMEIETIPH-- 172

Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
           +L  P  +E+RGE+ +  + F +LN+  +  G + +ANPRNAASG LR+++ + I  R L
Sbjct: 173 TLKEPLDMEIRGEIVLPISRFESLNERRMEAGEEVFANPRNAASGTLRQIDASIIKERGL 232

Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           + + + +        +   E ++ +  LG          +T   +    +  +  +  L 
Sbjct: 233 DCYFYFIVDAKNYGIQTHSESIKYLESLGIKTTGVCEVLDTASALKKRIDYWEQEKEKLD 292

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           Y+ DG+V KVD   L  +LG   +SPRW I++KF  KQ +T LL I  Q+GRTG +TPVA
Sbjct: 293 YETDGMVIKVDNLDLWDELGNTTKSPRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVA 352

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            LE V + G+ +  A+LHN   I+            +DIR+GD+V +++A E+IP+VV  
Sbjct: 353 ELEEVALSGSKVKRASLHNFHEIE-----------RKDIRIGDKVFIEKAAEIIPQVVKS 401

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           I   R    +  + P  CP+C S V R+     G++    +CT  + C  +   R+++FV
Sbjct: 402 IKEFRDGSEKMITEPDKCPVCGSPVARE----EGQVDI--KCTNPV-CPGKVKGRIEYFV 454

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SRDA NI G G + ++   K  + +F I+   DI+ L+  ++     +ENI   G  SV 
Sbjct: 455 SRDAMNIGGFGSKMVE---KMLELSF-IKNVGDIYDLKDHKED----LENIEKMGKRSVE 506

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL DSI   +     + I++LGI  +G    + LA+        ++ I+N++    ++  
Sbjct: 507 NLLDSIEASKKRDYSKVIYALGIPFIGKYSGKLLAEA-------SRNIDNLMKMEIEE-- 557

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE----NKKL 652
            LI +  +GD  A+A+ +F ++  NI  +  +LK         EK    + E     K  
Sbjct: 558 -LIEIDGIGDKGAKAVYDFLRDEENIELIN-ILKGHGLQFAMEEKEEEDQSEKIFSGKTF 615

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNE 711
           +FTGTL+  +R + +E + +LG    + +S+  D +I+G+  GSKL+KAQ+LG VKI+ E
Sbjct: 616 LFTGTLKNFKREEIKEEIEKLGGKNLSAVSKNLDYLIIGEKAGSKLKKAQELGTVKILTE 675

Query: 712 EQFLFLLQQYN 722
           E+F+ + +  N
Sbjct: 676 EEFVEICKNNN 686


>gi|116074145|ref|ZP_01471407.1| DNA ligase [Synechococcus sp. RS9916]
 gi|116069450|gb|EAU75202.1| DNA ligase [Synechococcus sp. RS9916]
          Length = 691

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 223/702 (31%), Positives = 347/702 (49%), Gaps = 55/702 (7%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P++ D  YD L R    +  A P L   + P     ++GG        V H I
Sbjct: 22  AYYVLDAPVMEDPVYDRLYRELLELESADPSLVTVDSPT---QRVGGTPAEGFSSVRHRI 78

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEPKIDGTMITIRYEKGKF 148
             LSL+  +N E+L  +  R+ R   ++        ++    E KIDG  + + YE G  
Sbjct: 79  GLLSLDNAFNAEELGAWYGRLLRVLDREPSEGQPRPALAMVGELKIDGNALALSYENGVL 138

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG  GED++A +R I ++P  L L+  P  +EVRGE +I    F  +N +   
Sbjct: 139 VRAATRGDGEQGEDITANVRTIGSVPLRLQLDQPPAWLEVRGEAFIPDGVFDGINADRQQ 198

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK---GQYEMLQKMRC 263
            G   +ANPRNA +G LR+L+P  +  R L+FF + L    +   +    Q++ LQ +R 
Sbjct: 199 RGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPDDWQGQRPTSQWDSLQWLRD 258

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
            GF VN           + +++N     R  L Y  DG+V K+D   LQ   G   ++PR
Sbjct: 259 AGFKVNPNAELLPDLDAVEAFFNSWDGGRRQLDYATDGVVVKLDNLRLQDAAGFTQKAPR 318

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W I+ K+  ++A ++LL +  Q+GRTG++TPVA  E V + G  ++ ATLHN D +  L 
Sbjct: 319 WAIALKYPAEEAPSKLLRLTCQVGRTGVITPVAEFEAVPLAGTSVSRATLHNADRLDEL- 377

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                     D+  GD ++V++AGE+IP+VV ++   R   A+    P  CP C S +VR
Sbjct: 378 ----------DLHAGDTIVVRKAGEIIPEVVRVLKELRPTSAERLQLPHTCPECGSTLVR 427

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           +         AA RC    +C A     L+H+VS+ A +++GLG + ++      D    
Sbjct: 428 EAGE------AATRCINS-SCPAILRGALRHWVSKGALDVDGLGSKLIEQLV---DRGLV 477

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
             I AD++ L     +S  ++      G  S  NL  ++   R     R ++ LGI HVG
Sbjct: 478 QSI-ADLYRLDAALLSSLERM------GQKSAENLVSALAASRQQGWARQLYGLGIHHVG 530

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A++LA  +        ++    A N  +  S+  V  +GD IAQ++ +++ NP N+ 
Sbjct: 531 EVNAKALAATFPD-----ADLLQTAACNAPE--SITAVFGIGDEIAQSLQQWFANPSNLQ 583

Query: 624 AVEALLKE-----VSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            +  L ++     +S    R  +  SSE  +     V TGTL  + R +A+E +   G  
Sbjct: 584 LLNGLREQGFSLALSADEQRRAEAASSERHLSGSTFVLTGTLPTLSRSQAKELIEAAGGK 643

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           VS  +S+KT  ++ GD  GSKL KA+ LG+ I++E     LL
Sbjct: 644 VSGSVSKKTSYVVAGDEAGSKLTKAESLGLTILDETGLQALL 685


>gi|307326508|ref|ZP_07605703.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113]
 gi|306887916|gb|EFN18907.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113]
          Length = 732

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 230/740 (31%), Positives = 372/740 (50%), Gaps = 72/740 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+  + L ++I  H   YY    P++ D+E+D L R  +A+    P L     P+ P 
Sbjct: 12  EVRERHARLAEQIEEHRFRYYVKDAPVVSDAEFDKLMRELEALEEETPAL---RTPDSPT 68

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G       +V H    LSL+  ++ E+L  +  RI +   +    +  F  E K+D
Sbjct: 69  QKVAGAYETDFTEVEHRERMLSLDNAFDDEELSTWADRIAK---ELGSGAYHFLCELKVD 125

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G+   AA RGDG +GED++  +R I  IP R+    +P ++EVRGEV+++
Sbjct: 126 GLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLTGDRVPALVEVRGEVFLA 185

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFA 251
           +  F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L+  VHG+G     +I  
Sbjct: 186 RERFEELNAGLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGARDGFDIDR 245

Query: 252 KGQ-YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307
             Q YE+L +    G P     +  +T   +   ++YY + +  R ++ ++IDG V K+D
Sbjct: 246 LSQAYELLHEW---GLPTAAHFKVVDTIEAVREYIAYYGDSEH-RHSVEHEIDGAVVKLD 301

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E  LQ +LG  +R+PRW I+ KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G+ 
Sbjct: 302 EIPLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGSE 361

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    + 
Sbjct: 362 VEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSERE 410

Query: 428 FSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           F  P+ CP C +     L P K G +    RC    +C AQ  ER+ +   R + +IE L
Sbjct: 411 FVMPATCPECDT----PLQPAKEGDV--DLRCPNSRSCPAQLRERIFYLAGRKSLDIENL 464

Query: 487 G------------------KQQLDFF-FKSED--PAFSIRIPADIFTLQRRQQTSTTKIE 525
           G                  K + D F  K E   P  S  +  D    +R  +T   K+ 
Sbjct: 465 GYVAAAALTQPLEPTEPPVKDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEAKVV 524

Query: 526 NIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G    +   +  +I   +   L R I  L IRHVG   A +LA+ + S    A
Sbjct: 525 TFFATQKGEAKKNALAMLANIEAAKERPLARIITGLSIRHVGPVAATALAREFRSLDRIA 584

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHE 640
           +     +A              VG  IA ++ E++    +   +E   +  V       E
Sbjct: 585 EADEEELAAVEG----------VGSTIAASVKEWFAVDWHREILEKWRRAGVRLEEEGGE 634

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
                 +E+  +V TGTLQ   R  A+E +   GA V+  +S+KTD ++VGDNPGSK +K
Sbjct: 635 DEGPRPLESLTVVVTGTLQSYTRDGAKEALQSRGAKVTGSVSKKTDFVVVGDNPGSKYDK 694

Query: 701 AQQLGVKIMNEEQFLFLLQQ 720
           A Q+ V +++E+ F  LL+Q
Sbjct: 695 AMQVKVPVLDEDGFGVLLEQ 714


>gi|169834268|ref|YP_001694538.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|254781426|sp|B1IBQ3|DNLJ_STRPI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168996770|gb|ACA37382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Hungary19A-6]
          Length = 652

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 362/685 (52%), Gaps = 65/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+ +  LGF VN  
Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A     I ++  E+   R  LPYDIDG+V KV++   Q++LG   ++P+W +++KF 
Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLVSQEELGFTVKAPKWAVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S ++   +     
Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+
Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
            LQ          E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++
Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L +Y+ S +N +Q  +  +A           +  +G +IA+++  ++    +   +   
Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFAAEGSEILLRE- 561

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LKE   ++    + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD
Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711
           +++VG + GSKL+KAQ+LG+++ +E
Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646


>gi|311898479|dbj|BAJ30887.1| putative DNA ligase [Kitasatospora setae KM-6054]
          Length = 788

 Score =  337 bits (863), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 237/767 (30%), Positives = 364/767 (47%), Gaps = 92/767 (11%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R   + L  EI  H   YY+   P++ D+E+DAL R  +A+  A P LA    P+ P 
Sbjct: 10  EVRTRHAELATEIEEHRSRYYEQDAPVVTDAEFDALMRELEALEAAHPALA---TPDSPT 66

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+GG        V H    LSL+   +  +L  +  R+       D     +  E K+D
Sbjct: 67  RKVGGAPTALFAPVEHRERLLSLDNAMDDAELAAWAERVAAELAGID---YHYLCELKVD 123

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE+G  V AA RGDG  GED++  +R I  +P R+   ++PE++EVRGEVY  
Sbjct: 124 GLAVNLTYERGVLVRAATRGDGRVGEDITPNVRTIEGVPHRLRGEDLPELVEVRGEVYFP 183

Query: 195 KNDFLALN--------------DEMIAVGRKPYA------NPRNAASGILRRLNP-TDIT 233
             +F ALN              +E    G++P A      NPRNAA+G LR+ +P     
Sbjct: 184 TAEFEALNASFEAENARRRQENEERAKEGKRPRALIRLFMNPRNAAAGSLRQKDPLITAA 243

Query: 234 RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           R L   VHG+G  +      Q      +R  G P         T   + ++       R 
Sbjct: 244 RPLRLVVHGIGARTGFDIDNQSHAYDLLRGWGLPTARHNAVVGTLDEVRAFIARFGERRH 303

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
           ++ ++IDG+V KVDE +LQ +LG  ++SPRW I+ K+  ++ + RL DI I IGRTG  T
Sbjct: 304 SVEHEIDGVVVKVDEIALQGRLGATSKSPRWAIAWKYPPEEVTGRLTDIRIGIGRTGRAT 363

Query: 354 PVARLE-PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           P A LE PV + G+++  ATLHN+  +K            + + +GD V++++AG+VIP+
Sbjct: 364 PYAVLEKPVKVAGSMVQYATLHNQQVVK-----------AKGVLLGDTVVLRKAGDVIPE 412

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
           +V  + + R    + F  P+ CP C S     L P +   +   RC     C AQ  ER+
Sbjct: 413 IVGPVHDLRDGGEREFVMPADCPECGS----GLRPMSEGDIDL-RCPNTRYCPAQIRERV 467

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTLQ-----------RRQQTS 520
                R+  ++EG G        +  +P    +R   DIF L            R  +TS
Sbjct: 468 AFLAGRNCLDVEGFGYVAATALTQPLEPTEPPVRDEGDIFGLTEERLLPIRVLVRDPRTS 527

Query: 521 TTKIE-------------NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
             K++             N  G      T L D++   R   L RF+  L IRHVG   A
Sbjct: 528 MPKLDDETGEQKEVFFFANNAGTARKDTTALLDNLRAARTSPLWRFLNGLSIRHVGPVAA 587

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP--RNIC-- 623
           ++LA+ +       ++++ + A +  +   L  V  +G  IA+A+ E+Y     R I   
Sbjct: 588 QALAREF-------RDLDRVFAADETE---LTAVEGIGPTIARAVKEWYAEDWHREILEK 637

Query: 624 --AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
             A   +  E +  +G         +E   +V TGTL    R  A+E +   GA V+  +
Sbjct: 638 WRAAGVVFTEEAEELGER------PLEGLTVVVTGTLAGHTRDGAKEALASRGAKVTGSV 691

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728
           S+KT  ++ GDNPGSK +KA QLG+ ++++  F  LL++     R H
Sbjct: 692 SKKTHFVVAGDNPGSKYDKAVQLGLPVLDDAGFAVLLERGADAARAH 738


>gi|332829049|gb|EGK01713.1| DNA ligase [Dysgonomonas gadei ATCC BAA-286]
          Length = 665

 Score =  337 bits (863), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 225/713 (31%), Positives = 375/713 (52%), Gaps = 55/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++++ +L +E++ H+  YY  S P I D E+D   +    +    P+     D N 
Sbjct: 1   MDHIKQQIEALREELNKHNHDYYVLSSPTISDFEFDKKLKELSELETLHPEYF---DANS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G ++N S  +V H  P LSL   +   ++  F  R+    QK  ++      E K
Sbjct: 58  PTQRVGSDINKSFRQVKHRYPMLSLGNTYTEAEVTDFYNRV----QKGLNDEFEIVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DGT I++ Y  G+   A  RGDG  G+DV+A +R I +IP R+   + P   E+RGE+ 
Sbjct: 114 YDGTSISLTYVNGELTQAITRGDGVQGDDVTANVRTIRSIPLRLHGNDYPAEFEIRGEIL 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEIF 250
           +  + F  LN E        +ANPRNA SG L++ +P  + +R L+ +  + LG+   + 
Sbjct: 174 MPWSVFEDLNKERAEQEEALFANPRNAGSGTLKQQDPKIVASRKLDSYLYYMLGEN--LP 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             G YE L K +  GF +++  ++  T   I +Y +     R  LP   DG+V KV+  +
Sbjct: 232 TDGHYENLMKAKEWGFKISDATKKCKTLDEIFAYVHYWDIERKNLPVATDGIVLKVNSLT 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  ++ PRW I+ KF  ++A T L  +  Q+GRTG +TPVA L+ V + G  +  
Sbjct: 292 QQRNLGYTSKFPRWAIAFKFQAEKAVTTLESVSYQVGRTGAVTPVANLKAVKLSGTTVKR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+L+NEDYI  L           D+ + D+V V++ GE+IPK+  +   +R    +   F
Sbjct: 352 ASLYNEDYINLL-----------DLHINDQVYVEKGGEIIPKITGVDTTKRGIFDEKVEF 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP C + +V+D         A + C   ++C  Q   R++HF++R A NI G G + 
Sbjct: 401 TKNCPECGTPLVKDDGE------AIYYCPNDISCPPQIKGRIEHFLTRKAMNIAG-GSET 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  +     A  I   AD++TL+ +     +++E    + + S  NL DSI+   ++  
Sbjct: 454 VEHLYN----ARLIHNIADLYTLKWQ---DVSRLER---WAEKSARNLVDSIHASVSVPY 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +++LGIR+VG  +A+ LA   L++ N    I+ ++A + ++   L++V  +GD IAQ
Sbjct: 504 ARVLYALGIRYVGETVAKKLA---LAFPN----IDALMAASAEE---LVQVDEIGDRIAQ 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQ 667
           +IV ++    N+  V   L+E        E  VS   E  K   +V +GT +K  R + +
Sbjct: 554 SIVRYFSEISNVEVVNK-LREFGIQFELSEDIVSQRTEKLKGLSIVISGTFEKHSRDEYK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             + Q G   S  +S KT+ I+ GDN G +KLEKA+ LGV +++EE FL +++
Sbjct: 613 AMIEQNGGKNSGSISSKTNYILGGDNMGPAKLEKAESLGVPVISEEVFLEMIK 665


>gi|318059490|ref|ZP_07978213.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actG]
 gi|318076490|ref|ZP_07983822.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actF]
          Length = 783

 Score =  337 bits (863), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 231/752 (30%), Positives = 375/752 (49%), Gaps = 83/752 (11%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           EA      R+E   + +E+  H   YY   +P++ D+++D L RR  A+    P L    
Sbjct: 29  EAAVPADVREEHDRIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---R 85

Query: 70  DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            P+ P  K+ G+         V H    LSL+ +++ E L  +  R+ +   +       
Sbjct: 86  TPDSPTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAK---EIGVPGYH 142

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           +  E K+DG  + + YE G+   AA RGDG  GED++  +R I  IP  L+ + +PE++E
Sbjct: 143 YLCELKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVE 202

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           VRGEVY    DF ALN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G 
Sbjct: 203 VRGEVYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG- 261

Query: 246 TSEIFA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             E F        YE+L +    G P     +  ++  G+ S+       R ++ ++IDG
Sbjct: 262 AREGFTIDRLSHAYELLHEW---GLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDG 318

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K+DE  LQ +LG  +R+PRW  + KF  ++ +T+L+DI + +GRTG +TP A +EP+
Sbjct: 319 VVVKLDEIPLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPI 378

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R
Sbjct: 379 VVAGSEVEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLR 427

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  P+ CP C +  +R +  K G +    RC    +C AQ  ER+ +   R + 
Sbjct: 428 DGSERAFVMPAECPECGT-PLRAM--KEGDI--DLRCPNARSCPAQLRERIFYLAGRKSL 482

Query: 482 NIEGLG---KQQLDFFFKSEDPAFSIRIPADIFTL--------------------QRRQQ 518
           +IE LG      L    +  DP   +R   D+F L                    +R   
Sbjct: 483 DIEHLGYVAATALTQPIEPSDP--PVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPA 540

Query: 519 TSTTKI----ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
           +   KI     N  G    +  ++ ++I   +   L + +  L IRHVG   A +LA+ +
Sbjct: 541 SGEEKIVTFFANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREF 600

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
            S       I+ I A    +   L     VG  IA ++ ++Y+   +      +L++   
Sbjct: 601 RS-------IDRIFAAEESE---LAETEGVGPTIAASLKQWYEEDWH----REILRKWKA 646

Query: 635 SIGRHEKNVSS------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           +  R E   S        +E   +V TGTL++  R  A+E +   GA V+  +S+KT  +
Sbjct: 647 AGVRMEAAESETDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFV 706

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +VGDNPGSK +KA  L V ++ E+ F  LL++
Sbjct: 707 VVGDNPGSKYDKALSLKVPVLEEDGFAILLEE 738


>gi|188524111|ref|ZP_03004188.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|198273308|ref|ZP_03205844.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|195659974|gb|EDX53354.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|198249828|gb|EDY74608.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
          Length = 673

 Score =  336 bits (861), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 223/714 (31%), Positives = 380/714 (53%), Gaps = 64/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD   R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130
           P  ++GG ++    KV H  P LSL   ++  DLRKF        Q   + S+    + +
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFD-------QDNQNASVDLKGYVV 110

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189
           EPKIDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRG
Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E
Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++ 
Sbjct: 230 LGIKTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINN 289

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +  ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++
Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIV 349

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+
Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
              + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+  
Sbjct: 399 ESITNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545
             ++ F+     A  I+  AD++ LQ+ ++    S  KI+      D S +NL +SIN  
Sbjct: 453 AIINKFY----DANLIKNVADLYYLQKHKEFILASDFKIK------DKSFSNLINSINNS 502

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SLE  + + GIRHVG  +A+ LAK + +           + H N D L+   V   G
Sbjct: 503 KTRSLEFLLTAFGIRHVGPNLAKKLAKQFKTMTT--------LMHANFDELT--NVDACG 552

Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           +  A +++ ++ +  NIC +  L      ++ +   I     N+  E +NK  V TG+  
Sbjct: 553 EKAALSLINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS 612

Query: 660 KIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            I R + +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+  E
Sbjct: 613 -ISRDEIKTILEKYYDAKVKNSVSKKTDYVLAGAEAGTKLEKAKSLGVKIIENE 665


>gi|333024269|ref|ZP_08452333.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071]
 gi|332744121|gb|EGJ74562.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071]
          Length = 771

 Score =  336 bits (861), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 230/752 (30%), Positives = 375/752 (49%), Gaps = 83/752 (11%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           EA      R+E   + +E+  H   YY   +P++ D+++D L RR  A+    P L    
Sbjct: 29  EAAVPADVREEHDRIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---R 85

Query: 70  DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            P+ P  K+ G+         V H    LSL+ +++ E L  +  R+ +   +       
Sbjct: 86  TPDSPTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAK---EIGAPGYH 142

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           +  E K+DG  + + YE G+   AA RGDG  GED++  +R I  IP  L+ + +PE++E
Sbjct: 143 YLCELKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVE 202

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           VRGEVY    DF ALN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G 
Sbjct: 203 VRGEVYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG- 261

Query: 246 TSEIFA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             E F        YE+L +    G P     +  ++  G+ S+       R ++ ++IDG
Sbjct: 262 AREGFTIDRLSHAYELLHEW---GLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDG 318

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K+DE  LQ +LG  +R+PRW  + KF  ++ +T+L+DI + +GRTG +TP A +EP+
Sbjct: 319 VVVKLDEIPLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPI 378

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R
Sbjct: 379 VVAGSEVEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLR 427

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  P+ CP C +  +R +  K G +    RC    +C AQ  ER+ +   R + 
Sbjct: 428 DGSERAFVMPAECPECGT-PLRAM--KEGDI--DLRCPNARSCPAQLRERIFYLAGRKSL 482

Query: 482 NIEGLG---KQQLDFFFKSEDPAFSIRIPADIFTL--------------------QRRQQ 518
           +IE LG      L    +  DP   +R   D+F L                    +R   
Sbjct: 483 DIEHLGYVAATALTQPIEPSDP--PVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPA 540

Query: 519 TSTTKI----ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
           +   KI     N  G    +  ++ ++I   +   L + +  L +RHVG   A +LA+ +
Sbjct: 541 SGEEKIVTFFANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSVRHVGPVAAAALAREF 600

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
            S       I+ I A    +   L     VG  IA ++ ++Y+   +      +L++   
Sbjct: 601 RS-------IDRIFAAEESE---LAETEGVGPTIAASLKQWYEEDWH----REILRKWKA 646

Query: 635 SIGRHEKNVSS------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           +  R E   S        +E   +V TGTL++  R  A+E +   GA V+  +S+KT  +
Sbjct: 647 AGVRMEAAESETDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFV 706

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +VGDNPGSK +KA  L V ++ E+ F  LL++
Sbjct: 707 VVGDNPGSKYDKALSLKVPVLEEDGFAILLEE 738


>gi|292670878|ref|ZP_06604304.1| DNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647499|gb|EFF65471.1| DNA ligase [Selenomonas noxia ATCC 43541]
          Length = 673

 Score =  336 bits (861), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 223/706 (31%), Positives = 358/706 (50%), Gaps = 54/706 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I++ + EL+ L ++I  +   YY  +   I D ++D L +R  AI   +P+L      N 
Sbjct: 4   IKEIKNELTELRKKIRKYSKQYYDENASDISDYDFDLLMQRLKAIEAEYPELITK---NS 60

Query: 74  PLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P  K+GG     +   V H +P LSL+ +++ +++R F+T +   +   +     F +E 
Sbjct: 61  PTQKVGGTAQREVGVLVPHDVPMLSLQDVFSEDEIRTFVTGVLSHFPSAE-----FVVEE 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           KIDG  + +RYE G  V A  RGDG   GEDV+   RAI  +   L  ++P   EVRGEV
Sbjct: 116 KIDGLSLALRYENGALVRAITRGDGVVQGEDVTLNARAISDVVETLHDSVP-YFEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           Y+ +  F  +N+    +G KP+ANPRN A+G LR+L+      R L+ FV  L +     
Sbjct: 175 YMERAAFAEVNERQELLGLKPFANPRNCAAGTLRQLDARVTKERKLSMFVFNLQRAEGHS 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI---RSTLPYDIDGLVYKVD 307
                +    MR  G  +   +   N  H     +N + +I   R  LPYDIDG V KV+
Sbjct: 235 FTSHTDAYDFMRAQGIKI---IANYNVCHTADEVWNAIMAIGARRGDLPYDIDGAVVKVN 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+ + +LG  A++PRW I++K+  ++  T L +I++ +GRTG +TP A  +PV + G  
Sbjct: 292 DFAQRAELGTTAKAPRWAIAYKYPPEEKETILRNIELSVGRTGRITPTAVFDPVQLCGTR 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN+DYI  L           D+R+GD +LV ++GE+IP+V  +I  +R  +  P
Sbjct: 352 VERATLHNQDYIDSL-----------DVRIGDTILVYKSGEIIPRVKAVIKEKRPKNTPP 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F     CP+C S  VR+ +       A  +C    AC AQ    + +FVSR+A +I+G G
Sbjct: 401 FVIGDQCPVCGSHAVRETD------TADMKCQNP-ACPAQVENHILNFVSRNAMDIKGFG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +  +         A  +   ADI++  L R +  S+  I       + SV N   +IN+ 
Sbjct: 454 ESAIIALTH----AGYLHDIADIYSLHLHRNELISSGLIGR-----EKSVDNRLAAINES 504

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  + +R +  LGI  +G   A SL + + S       I+ +      D   +  VP +G
Sbjct: 505 KANTPDRLLTGLGISGIGRAAAVSLMQAFPS-------IDALQETACTDPEKIRAVPDMG 557

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I  Q + EF+ +      ++              K   + ++ K  V TGTL  + R +
Sbjct: 558 EISVQKLTEFFTSETGRALLDKFRAAGVNFASTPMKPAGAALDGKSFVITGTLPTLSREE 617

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
               +T  G  V + +S+KTD ++ G+  GSKL+KA+ LG+ I++E
Sbjct: 618 CASLITSHGGTVKSSVSKKTDYLVAGEAAGSKLQKAEDLGIPILDE 663


>gi|257466592|ref|ZP_05630903.1| NAD-dependent DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917747|ref|ZP_07913987.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691622|gb|EFS28457.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 676

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 228/703 (32%), Positives = 369/703 (52%), Gaps = 56/703 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L++++  + D YY  ++ +I D EYD L +  + +        + ++ +     +G  + 
Sbjct: 14  LQKKLQRYSDAYYSQNESLISDYEYDMLLKELENLEAEL----QIQNKDSITQTVGSSLK 69

Query: 84  LSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
            S F K+ H  P LSL   + I ++  F+ R  +     D+  +   +E K+DG  I+I 
Sbjct: 70  NSKFQKIAHKTPMLSLSNTYQIGEIEDFLLRAKKNLNMTDNLEV--EMEIKLDGLSISII 127

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YEKGK V A  RGDG  GEDV+  +  I +IP  LS      IE+RGE+ +  ++F  LN
Sbjct: 128 YEKGKLVRAVTRGDGIVGEDVTENVLQIESIPHELSEAFD--IEIRGEIVLPFSEFENLN 185

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
              I  G + +ANPRNAASG LR+L+P  +  R+L  + + +    +     Q + +  +
Sbjct: 186 KIRIEKGEEVFANPRNAASGTLRQLDPKIVKERHLAAYFYFIVNAEQYGIHSQKDSIAFL 245

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSI---RSTLPYDIDGLVYKVDEFSLQKQLGER 318
             L  P   G+     FH +    N ++     R  L Y+ DGLV K++  SL ++LG  
Sbjct: 246 EKLSLPTT-GI--CEIFHNLSDLENRIEHWSKERENLAYETDGLVLKINNISLWEKLGST 302

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +SPRW +++KF  KQ +T+LLDI  Q+GRTG +TPVA LE V + G+ +  A+LHN D 
Sbjct: 303 GKSPRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVKRASLHNYD- 361

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
                   +++R  +DIR+GD V +++A E+IP+VV  +  +R  + +    P+ CPIC 
Sbjct: 362 --------EIVR--KDIRIGDTVFIEKAAEIIPQVVKSVKQDRTGEEKEIEAPAHCPICN 411

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S + R+      K +  H C G +         +++FVSRD  NI GLG + L+ F    
Sbjct: 412 SVLEREQGLVDLKCINKH-CPGKIQG------EMEYFVSRDGMNISGLGGKILEKFL--- 461

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
           D  + +   +DI+ L+ R++    ++E +   G  S+ NL +SI + +  S ++ +++LG
Sbjct: 462 DLHY-LEDVSDIYYLKERKE----ELEQLDKMGKKSIENLLNSIEESKKTSYDKVLYALG 516

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  VG   A+ LAK          E  NI          L ++  +G+ +A++IV+F+QN
Sbjct: 517 IPFVGKVAAKLLAK----------ESKNIFKLQTMTEEELQQIEGIGEKMARSIVDFFQN 566

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEI---ENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                 ++ L+        +     S+E    + K  + TGTL K  R + QE + + G 
Sbjct: 567 EVKKQLIQNLIDIGLCFTLKDGVEASTEAKIWQGKTFLVTGTLSKYTRAELQEDIEKSGG 626

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFL 717
              + +++K D +IVG+  GSKLEKA+ LG V I+ EE FL L
Sbjct: 627 TNLSSVTKKLDYLIVGEKAGSKLEKAKALGSVTILTEEDFLAL 669


>gi|153952455|ref|YP_001398174.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. doylei
           269.97]
 gi|190359241|sp|A7H3U4|DNLJ_CAMJD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152939901|gb|ABS44642.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 647

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 221/689 (32%), Positives = 365/689 (52%), Gaps = 64/689 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYDAL R        F +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDALIREL----RVFEEQNKDEVSKDSPTQKIAPTIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L+++W++ED+  F     R W K+      F +EPK DG  + + YE GK V  A 
Sbjct: 74  ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++   + IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKKRIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  G+G+ +  F K   E++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFVRDLGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           ++       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG   + P++M + KF 
Sbjct: 244 IKLCANLDEVLKAYDELLTLREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ I++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGINLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +    R       S P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISHPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+   +C   + C  + +  + HFVS+   NI+GLG+  ++  +K +           I 
Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+       +  E + GF +  + NL ++I + R   L RFI +LGI H+G   A+ L+
Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
                  +F +E       +   + + + +   G+ +A ++ EF +   N   ++   K 
Sbjct: 514 ------LSFGKE------WHKQSFEAYVNLEGFGEQMALSLCEFTR--VNHTRIDEFYKL 559

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++  I + E    S I  K  V TGTL +  R + +  +  LG  VS  +S+KTD ++ G
Sbjct: 560 LNLKIEKLEVKSDSVIFGKTFVITGTLSR-PRDEFKALIENLGGKVSGSVSKKTDYVLFG 618

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  GSKL KA++L VK ++E  F  L+++
Sbjct: 619 EEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|227542668|ref|ZP_03972717.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181551|gb|EEI62523.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 679

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 219/703 (31%), Positives = 355/703 (50%), Gaps = 52/703 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM- 82
           L  ++ YH D YY    P I D+E+D L  +   +    P L     P+ P  ++G    
Sbjct: 12  LAAQVRYHRDKYYN-GTPEITDAEFDVLFSQLQQLEAEHPGL---RAPDSPTLEVGAPSP 67

Query: 83  -NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
              S   + H     SL+ +++ ++L +++ R           S  +++E KIDG  I +
Sbjct: 68  EGSSFENIAHLERMYSLDNVFSKDELEQWLIRT---------PSDTYSVELKIDGVSIDL 118

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKND 197
            Y  G+   AA RGDG  GE+++A  R I  IP  L  N    IP ++EVRGEVYI+ +D
Sbjct: 119 VYRDGELATAATRGDGTVGEEITANARMITGIPDHLQENDAFPIPSVLEVRGEVYIAIDD 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++     +KP+ANPRNAA+G +R+ +P  +  R L    HG+G    I  + Q E
Sbjct: 179 FPLVNEQRQLENKKPFANPRNAAAGSMRQKDPQAVKKRKLTLVCHGIGAAEGISFESQTE 238

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
             + +   G PV+      ++   +     +    R    +++DG+V KVD    Q+ LG
Sbjct: 239 AYKALAAFGLPVSEYTTVVHSHEEVHEMVEKWADHRHDAVFEMDGMVVKVDNREQQRALG 298

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I++K+  ++A T+L+D+ + +GRTG +TP A +EPV + G+ +  ATLHN+
Sbjct: 299 ATSRAPRWAIAYKYPPEEAVTKLIDVRVGVGRTGRVTPFAIMEPVEVAGSTVEMATLHNQ 358

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                     +V R G  + +GD+V++++AGEVIP+V+  + + R    +PF FP+ CP 
Sbjct: 359 S---------EVNRKG--VLIGDQVVIRKAGEVIPEVLGPVADLRDGTERPFVFPTLCPQ 407

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C ++    L P   +  A  RC    +C  Q   RL++   R  F+IE LG++      +
Sbjct: 408 CGTK----LAPAK-EEDADWRCPNTRSCPGQLAGRLEYIAGRGVFDIEALGEKAAADLVR 462

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      +   AD+FTL       +    N  G  + +   L   +  ++   L R I  
Sbjct: 463 T----GILTDEADLFTLTEDDLLDSRVYTNSKGAVNAAGKKLIAGLKTQKETDLWRVITG 518

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L IRHVG   AR+LA+ + S     +     +A              VG +IA +IV+++
Sbjct: 519 LSIRHVGPTAARALAREFGSMDAIRKATEEELAATEG----------VGGVIAASIVDWF 568

Query: 617 QNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
               +   V+A  +  V+    R E    + +E   +V TG+L+   R   +E + + G 
Sbjct: 569 SVDWHRAIVDAWAEAGVTMEDERGEAKEQT-LEGLTIVVTGSLENYTRDGVKEAIIERGG 627

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             S  +S+KTD ++VG N GSK  KA++LG  I+NE+QF  LL
Sbjct: 628 KASGSVSKKTDYVVVGANAGSKAAKAEELGRPIINEQQFEELL 670


>gi|312865342|ref|ZP_07725570.1| DNA ligase (NAD+) [Streptococcus downei F0415]
 gi|311099453|gb|EFQ57669.1| DNA ligase (NAD+) [Streptococcus downei F0415]
          Length = 673

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 215/685 (31%), Positives = 355/685 (51%), Gaps = 63/685 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D++YD L R    +  A P+L +++ P    +++GG +     K TH  P
Sbjct: 40  YYTQDNPSVSDAQYDKLYRELVDLEKAHPELVQADSPT---HRVGGLVLDGFEKYTHEYP 96

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     K +  S  +  E KIDG  I++ Y  G+    A R
Sbjct: 97  LFSLQDAFSREELDDFDRRV-----KAEFPSASYLAELKIDGLSISLTYVNGQLQIGATR 151

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+++  ++ I  IP  LSL   + I VRGE Y+ +  F A+N +    G+  +A
Sbjct: 152 GDGTVGENITENLKRIQDIP--LSLAGGQTITVRGEAYLPRASFEAINAKRREEGQDEFA 209

Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+   +  R L  F++   +  E     Q  +L+    +GF VN    
Sbjct: 210 NPRNAAAGTLRQLDTAVVAQRKLATFIYQ--EAGETDFPTQEAVLEGFADMGFVVNPRRI 267

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
             ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG   ++PRW I++KF  +
Sbjct: 268 VTSSMDEIWDFIQAVQADRDNLAYDIDGIVIKVNSLAMQEELGFTVKAPRWAIAYKFPAE 327

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +   +++ +D  +GRTG++TP A L PV + G  ++ ATLHN DYI             +
Sbjct: 328 EKEAKIISVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYI-----------ADK 376

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR+ D V+V +AG++IP V+++++ +R     P   P  CP C SR+V   +       
Sbjct: 377 DIRLDDTVVVYKAGDIIPAVLNVVMAKRQKQL-PMEIPETCPSCYSRLVHYEDE------ 429

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
            A RC     C AQ  E+L HF SRDA NI GLG   ++  ++    A  I+  AD++  
Sbjct: 430 VALRCVNP-RCPAQLKEKLIHFASRDAMNITGLGPSLIEKVYQ----AGLIQDVADLY-- 482

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
               Q +   +  + G  + S   LY +I   +  S E+ +F LGIRHVGA+ ++ L + 
Sbjct: 483 ----QLTVADLLTLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGAKASKQLLEK 538

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S           IA           +  +G +IAQ++ +++         + L++E+ 
Sbjct: 539 FGSLGQLMSAKFEAIAD----------IDGLGAVIAQSLQDYFATD----GAKQLMRELQ 584

Query: 634 PS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
            +      +G+      + +    +V TG L  + R +A+E +  LGA V+  +S+ TD+
Sbjct: 585 EAGLNFDYLGKRVTE-DAALSGMTVVLTGKLVSLTRSQAKEKLETLGAKVTGSVSKNTDL 643

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEE 712
           ++ G + GSKL KAQ+LG+ I +E+
Sbjct: 644 VVAGTDAGSKLTKAQELGITIQDED 668


>gi|32267302|ref|NP_861334.1| NAD-dependent DNA ligase LigA [Helicobacter hepaticus ATCC 51449]
 gi|81665265|sp|Q7VF74|DNLJ_HELHP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|32263355|gb|AAP78400.1| DNA ligase [Helicobacter hepaticus ATCC 51449]
          Length = 650

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 231/692 (33%), Positives = 371/692 (53%), Gaps = 62/692 (8%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
           ++++YH   YY   +PI  D +YD+L  +        P L    D + P  ++G     S
Sbjct: 14  KKMAYH---YYVLDEPIATDEQYDSLYHQIVRFEEENPHLI---DASSPTQRVGDVPLES 67

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
             K TH     SLE ++N ++L +++ RIY+ + +       FT  PK DG  + + Y++
Sbjct: 68  FSKNTHLERMWSLEDVFNYDELVEWVQRIYKSYPQAT-----FTCSPKFDGASLNLLYQE 122

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           GK V A  RGDG  GE V+   + I +IP  L +N  E IE+RGEV I+K DF  +N + 
Sbjct: 123 GKLVSATTRGDGVIGELVTHNAKTIQSIP--LEINYKEEIEIRGEVVIAKEDFEYINQDR 180

Query: 206 IAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
           ++     +ANPRNAA+G LR+L+      R L F   G+G    I  +  YE    +  L
Sbjct: 181 LSENLSLFANPRNAAAGSLRQLDAKITAKRKLRFMPWGIG-AGLIRFESFYEAFNTITRL 239

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF     +    +   I + YN + S R+  P  +DG+V  +D+ + Q+QLG   +SPR+
Sbjct: 240 GFAPVPFLSYCESIESIQNAYNVLFSQRNNYPIMLDGMVIMLDKIASQQQLGWTIKSPRF 299

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             ++KF   + S+++L + +Q+GRTGI+TPVA L+PV I GA+I+ ATLHN   I+    
Sbjct: 300 ACAYKFPAVEKSSKILSVSLQVGRTGIITPVAELKPVEIEGAMISRATLHNFSEIE---- 355

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC-QSRVVR 443
                   +DIR+GD V++ R+G+VIPK++  +V  R    +  S P+ CP+C +  ++ 
Sbjct: 356 -------RKDIRLGDEVIIIRSGDVIPKIIKPLVALRDGTQKVISKPTHCPVCGEELLLE 408

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           D+  K         C   L+C A+ +E + HF S+ A NI+GLG++ +   +++   AF 
Sbjct: 409 DIFIK---------CQ-NLSCEARVIESIIHFASKKALNIDGLGEKIVIQLYEN---AF- 454

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           +R   DI+ L      S  ++  + G+ +    NL  +I     + L RFI +LGI H+G
Sbjct: 455 VRNIKDIYAL------SIQQLLTLEGWQEKRANNLIYAIQNTIGVELWRFINALGIEHIG 508

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              ++ LA+ +     F  E++ I++           V   G+ +A ++VEF  N  N  
Sbjct: 509 EGASKKLAQKF-GLNVFELELSEILS-----------VDGFGEEMAYSLVEF--NHANKT 554

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            +  LL  + P +   E + ++   NK +V TGTL +  R +  + +   GA +S+ +S+
Sbjct: 555 LIAELLCIIKPKVELLEIDNNNVFFNKTIVLTGTLSQ-PRDRIIKLLESKGAKISSSVSK 613

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           KTD +I G+  GSKLEKAQ L +  +NEE+FL
Sbjct: 614 KTDFVIYGEKAGSKLEKAQSLNITTLNEEEFL 645


>gi|253583310|ref|ZP_04860508.1| DNA ligase [Fusobacterium varium ATCC 27725]
 gi|251833882|gb|EES62445.1| DNA ligase [Fusobacterium varium ATCC 27725]
          Length = 688

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 233/724 (32%), Positives = 377/724 (52%), Gaps = 54/724 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK+ +L   E   ++  ++ +  L  ++  ++  YY  ++ +I D EYD L      +  
Sbjct: 1   MKEMKLNFFEENDMKTDKERIEKLRADLLKYNQYYYTNNESLISDVEYDMLMNELKDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNL---SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF 117
            +P+      P      I G  NL      KVTH  P LSL   +N E++  FI RI + 
Sbjct: 61  KYPEYKSEASPT----VIVGASNLRENKFQKVTHRKPMLSLSNTYNEEEIGDFIDRIKKL 116

Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
               ++N+I + LE K+DG  I+I+YEKGK V    RGDG  GEDV+  I  I TIP   
Sbjct: 117 LP--EENNIKYALELKLDGLSISIQYEKGKLVKGVTRGDGAIGEDVTENILEIETIPH-- 172

Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
           +L  P  IE+RGE+ +  + F  LN+  +  G + +ANPRNAASG LR+++ + I  R L
Sbjct: 173 TLKEPLDIEIRGEIVLPISKFETLNERRMEAGEEVFANPRNAASGTLRQIDASIIKERGL 232

Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           + + + +        +   E ++ +  LG           T   +    +  +  +  L 
Sbjct: 233 DCYFYFIVDAKNYGIQTHSESIKYLESLGIKTTGVCEVLGTASALKKRIDYWEQEKEKLD 292

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           Y+ DG+V KVD      +LG   +SPRW I++KF  KQ +T LL I  Q+GRTG +TPVA
Sbjct: 293 YETDGMVIKVDNLDFWDKLGNTTKSPRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVA 352

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            LE V++ G+ +  A+LHN   I+            +DIR+GD+V +++A E+IP+VV  
Sbjct: 353 ELEEVSLSGSKVKRASLHNFHEIE-----------RKDIRIGDKVFIEKAAEIIPQVVKS 401

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           I   R    +  + P  CP+C S V R+     G++    +CT  + C  +   R+++FV
Sbjct: 402 IKEFRDGSEKMITEPDKCPVCGSPVARE----EGQVDI--KCTNPV-CPGKVKGRIEYFV 454

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SRDA NI G G + ++   K  +  F I+   DI+ L+  ++     +ENI   G  SV 
Sbjct: 455 SRDAMNIGGFGSKMVE---KMLELGF-IKNVGDIYDLKDHKED----LENIEKMGKRSVE 506

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL DSI   +     + I++LGI  +G    + LA+        ++ I+N++    ++  
Sbjct: 507 NLLDSIEASKKRDYSKVIYALGIPFIGKYSGKILAEA-------SRNIDNLMKMEIEE-- 557

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKL 652
            L+ +  +GD  A+A+ +F+++  NI  +  +L+         EK    +       K  
Sbjct: 558 -LMEIDGIGDKGAKAVYDFFRDEENIELIN-ILRGHGLQFAMEEKEEEDQSDKIFSGKTF 615

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNE 711
           +FTGTL+  +R + +E + +LG    + +S+  D +I+G+  GSKL+KAQ+LG VKI+ E
Sbjct: 616 LFTGTLKNFKREEIKEEIEKLGGKNLSAVSKNLDYLIIGEKAGSKLKKAQELGTVKILTE 675

Query: 712 EQFL 715
           E+F+
Sbjct: 676 EEFI 679


>gi|118465270|ref|YP_883031.1| NAD-dependent DNA ligase LigA [Mycobacterium avium 104]
 gi|166215821|sp|A0QJE3|DNLJ_MYCA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118166557|gb|ABK67454.1| DNA ligase, NAD-dependent [Mycobacterium avium 104]
          Length = 693

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 226/714 (31%), Positives = 363/714 (50%), Gaps = 49/714 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R++   L + +  H   YY    PII D+E+DAL     A+    P+L  ++ P   +
Sbjct: 12  EVRRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPELRVADSPTQLV 71

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
              G   + +  +  H    LSL+ +++ ++L  +  R+    + +      +  E KID
Sbjct: 72  GGAGFATDFA--EAAHLERMLSLDDVFDTDELIAWSNRV----ENEIGKDPHYLCELKID 125

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEV 191
           G  +++ Y  G+   AA RGDG  GEDV+   R I  +P  LS      +P ++EVRGEV
Sbjct: 126 GVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSPSDDFPVPALLEVRGEV 185

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           +    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HG+G+T    
Sbjct: 186 FFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTEGFS 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307
            K Q+E    +   G PV     +      +   + Y+ E    R  L ++IDG+V KVD
Sbjct: 246 PKTQHEAYTALSVWGLPVAEQTARVRGLAAVQERIGYWGEH---RYELQHEIDGVVVKVD 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ 
Sbjct: 303 DVALQRRLGATSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGST 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN         + +V R G  + +GD V++++AG+VIP+V+  +V+ R    + 
Sbjct: 363 VGLATLHN---------AAEVKRKG--VLIGDTVMIRKAGDVIPEVLGPVVDLRDGTERE 411

Query: 428 FSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           F  P+ CP C +     L P K G   A  RC    +C AQ  ER+ H   R A +IEGL
Sbjct: 412 FVMPTTCPECGT----PLAPAKEGD--ADIRCPNARSCPAQLRERVFHVAGRGALDIEGL 465

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +      K    A  I    D+F L       T       G    + T L  ++ K +
Sbjct: 466 GYEAATALLK----AGVIADEGDLFALTEDDLLRTELFRTKAGTLSANGTRLLQNLQKAK 521

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            ++L R + +L IRHVG   AR+LA  +        ++++I++ + +    L  V  VG 
Sbjct: 522 KVALWRVLVALSIRHVGPTAARALATEF-------GDLDSIMSASTE---RLAAVEGVGP 571

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            IA A+ E++    +   V+             + +V   +E   +V TG+L    R  A
Sbjct: 572 TIAAALTEWFTVDWHRAIVDKWRGAGVRMADERDASVPRTLEGLTVVVTGSLAGFSRDDA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +E +   G   +  +S+KTD ++ GD+PGSK +KA +LGV I++E+ F  LL +
Sbjct: 632 KEAILARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPILDEDGFRKLLAE 685


>gi|291538763|emb|CBL11874.1| DNA ligase, NAD-dependent [Roseburia intestinalis XB6B4]
          Length = 671

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 223/708 (31%), Positives = 374/708 (52%), Gaps = 57/708 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L  +I+YH D YY    P I D E+D L ++   +    P+L   + P      +
Sbjct: 5   EQIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTKDSPT---QHV 61

Query: 79  GGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG    +    V H++P LSL+ +++ E++  F+ ++    ++ DD    F +E KIDG 
Sbjct: 62  GGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMK---EQLDDPE--FVVEYKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
            + +RYE G    A  RGDG + GEDV+A  + I  + + L  + PE +E+RGEVY+   
Sbjct: 117 SMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLK-DKPEYLEIRGEVYMKNE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKG 253
           DF  +N++   +G+K +ANPRN A+G LR+L+      R L+ FV  + +    +I    
Sbjct: 176 DFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRGMDIMTHT 235

Query: 254 Q-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           Q YE L++    G P+    +   T   + +    +   R  L YDIDG V K++ +S +
Sbjct: 236 QGYEFLKRQ---GIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINRYSDR 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  ++ P+W I++K+  ++  T+LLDI++ +GRTG +TP A  EPV + G  ++ AT
Sbjct: 293 ELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSVSRAT 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFP 431
           LHN+D+I  L           D+ +GD ++V ++GE+IPKV + +  E+ PD  + F  P
Sbjct: 353 LHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKE-VRKEKRPDGWKRFMIP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C ++  R+      K  A  +CT    C AQ    + +FV RDA +I+G G   +
Sbjct: 401 DVCPVCGAKTERE------KDTADIKCTSP-NCPAQLERHIINFVGRDAMDIKGFGTVYI 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +       I+  ADIF L+  ++      + I+G  + +   L ++I K +     
Sbjct: 454 EELVR----LGYIKDIADIFELKDHREELIE--QGIIG-KEKNTDKLLETIEKAKENDAY 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             +   GI +VG   A+++ K + S          I+   N D  +L+ V  VG++ A  
Sbjct: 507 MLLTGFGIPNVGKAAAKTIMKRFSS----------ILDLENADRDALMEVDDVGEVSADC 556

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I  F+ + +N   + A LK +  ++   E + + S +  K +V TGTL  + R +A E V
Sbjct: 557 IFRFFHDEKNKEMI-ARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAELV 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + G  VS  +S+KTD ++ G++ GSKL KAQ+LG+ ++ E +   LL
Sbjct: 616 EKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663


>gi|329936847|ref|ZP_08286526.1| NAD-dependent DNA ligase LigA [Streptomyces griseoaurantiacus M045]
 gi|329303772|gb|EGG47656.1| NAD-dependent DNA ligase LigA [Streptomyces griseoaurantiacus M045]
          Length = 731

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 229/741 (30%), Positives = 366/741 (49%), Gaps = 76/741 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QAR+    L ++I  H   YY    P++ D+E+D L R    +    P+L     P+ P 
Sbjct: 15  QARERHVRLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRELQELEERHPEL---RTPDSPT 71

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G        V H    LSL+  +N EDL  +  RI R   +    +  F  E K+D
Sbjct: 72  QKVAGAYETEFTSVRHRERMLSLDNTFNDEDLAAWTERIAR---ELGSQTYHFLCELKVD 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G+   AA RGDG +GED++  +R I  IP R+    +P+++E+RGEV+  
Sbjct: 129 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLHGEEVPDVVEIRGEVFFP 188

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
              F  LN  ++  G KP+ANPRNAA+G LR+ +P    +R L+  VHG+G   E F +G
Sbjct: 189 MEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTASRPLHMVVHGIGAL-EGF-EG 246

Query: 254 QYEMLQKMRCLG---FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              + Q    LG    P +   R      G+  +       R ++ ++IDG V K+DE  
Sbjct: 247 MSRLSQAYDLLGSWGLPTSPYNRVVEDLAGVREFIAHYGENRHSVAHEIDGAVVKLDEIP 306

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +R+PRW I++K+A ++ +TRL++I + +GRTG +TP A++EPV + G+ +  
Sbjct: 307 LQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 366

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 367 ATLHNQDVVK-----------AKGVLIGDMVVLRKAGDVIPEILGPVADLRDGSEREFVM 415

Query: 431 PSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           P+ CP C +     L P K G +    RC    AC AQ  ERL +   R + +IE  G  
Sbjct: 416 PADCPECGT----PLRPMKEGDVDL--RCPNSRACPAQLRERLFYLAGRKSLDIEHFGYV 469

Query: 490 QLDFFFKSEDPA-FSIRIPADIFTL--------------------QRRQQTSTTKIENIL 528
                 +  +PA   +    D+F L                    +R  +T   KI  + 
Sbjct: 470 AAAALTRPLEPAEPPLTDEGDLFDLTMEQLLPIKAYVLDQDSGLPKRDPRTGEEKIATVF 529

Query: 529 ----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
               G    +  ++ ++I   +   L R +  L IRHVG   A +LA+ + S        
Sbjct: 530 ANQQGEPRKNAVSMLENIAAAKERPLARVLTGLSIRHVGPVAAEALAREFRSVDRIEAAS 589

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +A              VG IIA ++ +++    +      +L++   +  R E+  +
Sbjct: 590 EEELAATEG----------VGPIIAASLKQWFAEDWH----REILRKWKAAGVRMEEEST 635

Query: 645 SE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E      +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGD+PGSK 
Sbjct: 636 GEDEGPRPLEGLTVVVTGTLEHHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDSPGSKY 695

Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719
           +KA QL V ++NE+ F  LL+
Sbjct: 696 DKAMQLKVPVLNEDGFAVLLE 716


>gi|297626017|ref|YP_003687780.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921782|emb|CBL56340.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 764

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 230/742 (30%), Positives = 381/742 (51%), Gaps = 63/742 (8%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + ++   ++Q R+  + L +EI    + YY   KP I D+ YD L      +   +P L 
Sbjct: 19  VTVKVAGVDQQRRH-AELVKEIDDAQEAYYGRDKPFITDALYDELMLELQKLEAEYPSL- 76

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
               P+ P  ++G     + F  +TH    LSL+ +++I++L++++TR     +    ++
Sbjct: 77  --RTPDSPTQRVGAPQEETDFSPLTHPSQMLSLDDVFSIDELKEWMTRT----EAALGHT 130

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-- 183
             +  E KIDG  I ++Y  G+   AA RGDG  GE+++   R I  IP+ L  +  +  
Sbjct: 131 PEWLCEVKIDGLAIDLQYVNGRLQTAATRGDGRVGENITPNARTIKAIPQRLRPDPAQDF 190

Query: 184 --IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFV 240
             + E RGEV++   +F A ND++   G+  +ANPRNAA+G LR+ +P     R L+   
Sbjct: 191 LALFEARGEVFVPLKEFAAYNDKLADQGKPQFANPRNAAAGSLRQKDPRVTAQRPLSSIC 250

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           HGLG    +    Q +    M+  G P+   N  V   +     ++YY +    R  L +
Sbjct: 251 HGLGVADGLAVTRQSDAYAVMKAWGLPISPYNKVVHSLDEVLDFITYYGQH---RHDLIH 307

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            IDG+V KVD F+ Q+QLG  +R+PRW I+ K+  ++ +TRLLDI +++GRTG +TP   
Sbjct: 308 QIDGIVVKVDSFAEQQQLGVTSRAPRWAIAFKYPPEEVNTRLLDIRVKVGRTGRVTPYGV 367

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +EPV + G+++++ATLHN         + +V R G  + +GD V++++AG+VIP++V  +
Sbjct: 368 MEPVQVAGSVVSSATLHN---------AYEVERKG--VLIGDMVVLRKAGDVIPEIVGPV 416

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           V  R    +PF  P+ CP C +++  +   ++ K +   RC    +C AQ  ERL    +
Sbjct: 417 VEMRTGAERPFVMPTHCPSCGTKLASEK--ESDKDI---RCPNSKSCPAQLRERLFSLAA 471

Query: 478 RDAFNIEGLGKQQLDFFFKS-----EDPAFSIRIPADIFTLQ--RRQQTSTTKIENIL-- 528
           R AF+IE LG Q  D   ++     E   F++  P  + T+    R  T     E  L  
Sbjct: 472 RSAFDIEALGYQGADAILRAGVLDNEAQLFNL-TPEQLVTVPFYTRGATPRELKEPALVP 530

Query: 529 --GFGDVSVTN-----LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
             G  D  V +     L +++   R+  L R + +L IRHVG   AR+LA  + S     
Sbjct: 531 PPGIRDGRVLSANGRRLLENLRTARHQPLWRVLVALSIRHVGPTAARALAARFGS----- 585

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
             ++ I A   ++   L     VG IIA+A+ +++    ++  + A   +          
Sbjct: 586 --MDAIRAAGVEE---LADTDGVGLIIAEAVRDWFTVDWHLEILNAWAADGVSMADEKSA 640

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
             +  +    +V TG+LQ   R  A+  +T  G   +  +SR TD ++VG+N GSK  +A
Sbjct: 641 RPAQTLRGLTVVVTGSLQDFTRDSAKAAITDRGGKAAGSVSRHTDYVVVGENAGSKQARA 700

Query: 702 QQLGVKIMNEEQFLFLLQQYNT 723
           +QLGV +++E QF  LL+   T
Sbjct: 701 EQLGVPMLDEAQFRELLEHGPT 722


>gi|86149767|ref|ZP_01067996.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597007|ref|ZP_01100243.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562237|ref|YP_002344016.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|122952953|sp|Q0PAT1|DNLJ_CAMJE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|85839585|gb|EAQ56845.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190696|gb|EAQ94669.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359943|emb|CAL34732.1| DNA ligase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925847|gb|ADC28199.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315927323|gb|EFV06667.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930607|gb|EFV09637.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 305]
          Length = 647

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 222/695 (31%), Positives = 360/695 (51%), Gaps = 76/695 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYDAL R        F +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDALIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L+++W++ED+  F     R W K+      F +EPK DG  + + YE GK V  A 
Sbjct: 74  ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++   E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  G+G+ +  F K   E++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           VR       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG   + P++M + KF 
Sbjct: 244 VRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +    R       S P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+        + C  + +  + HFVS+   NI+GLG+  ++  +K +           I 
Sbjct: 408 LIKCQ----NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+          E + GF +  + NL ++I + R   L RFI +LGI H+G   A+ L+
Sbjct: 454 TLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513

Query: 572 ------KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
                  Y  S++ +A                   +   G+ +A ++ EF +  R    +
Sbjct: 514 LSFGKEWYKQSFEAYAN------------------LEGFGEQMALSLCEFTRVNRT--RI 553

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +   K ++  I + E      I  K  V TGTL +  R + +  + +LG  VS  +S+KT
Sbjct: 554 DEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKT 612

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           D ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 613 DYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|296329302|ref|ZP_06871803.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153658|gb|EFG94475.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 696

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 226/710 (31%), Positives = 379/710 (53%), Gaps = 58/710 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L ++++ + D YY  +K +I D E+D L +  +++   +P   + ++ + P   +G  + 
Sbjct: 34  LREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYP---QYKEISSPTTSVGASLK 90

Query: 84  LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
            + FK V H    LSL   +NI ++ +FI RI +   K+ +  + + LE K+DG  I++ 
Sbjct: 91  ENKFKKVEHLHQMLSLANSYNIGEIVEFIERIKKKIPKEQE--LKYCLEVKLDGLSISLT 148

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    F  LN
Sbjct: 149 YRQGKLVRAVTRGDGFIGEDVTENILEIASIVKTLPQAID--MEIRGEVVLPLASFEKLN 206

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           +E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E ++ +
Sbjct: 207 NERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGLKSHSESIKFL 266

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G  +++
Sbjct: 267 ESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWDEIGYTSKT 326

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF   Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN   I+ 
Sbjct: 327 PRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNISEIQ- 385

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+C  ++
Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKIIEEPVCCPVCNHKL 435

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+        +   +C     C A+    +++FVSRDA NI GLG + ++ F    D  
Sbjct: 436 EREEG------LVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
           + I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   ++ I++LGI  
Sbjct: 486 Y-IKTVVDIFDLKNHREA----LENIDKMGKRSIENLLNSIEESKNRDYDKVIYALGIPF 540

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   ++ LAK        ++ I+ ++    ++   L  +  +G+I A  I+ F+   +N
Sbjct: 541 IGKVASKILAKA-------SKNIDKLMTMTFEE---LTSIEGIGEIAANEIIAFFTKEKN 590

Query: 622 ICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
              ++ L        +KE   S+    +NV+     K  +FTGTL+   R + +E + +L
Sbjct: 591 QKIIQGLKEKGLKFEIKESEASV----QNVNPNFVGKNFLFTGTLKHFTREQIKEEIEKL 646

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           G    + +S+  D +IVG+  GSKL+K Q++  +KI+ EE+F+ L  +++
Sbjct: 647 GGKNLSSVSKNLDYLIVGEKAGSKLKKVQEIPTIKILTEEEFIELKDKFD 696


>gi|116071920|ref|ZP_01469188.1| DNA ligase [Synechococcus sp. BL107]
 gi|116065543|gb|EAU71301.1| DNA ligase [Synechococcus sp. BL107]
          Length = 682

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 216/696 (31%), Positives = 348/696 (50%), Gaps = 47/696 (6%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P + D+ YD L R    +    P L  ++ P     ++GG        V H I
Sbjct: 21  AYYVLDTPTMEDAVYDRLYRELLELEQTTPSLKTADSPT---QRVGGAPAEGFTNVEHRI 77

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             LSL+  ++ +DL  +  R+ R   +   + +    E KIDG  + + Y  G    AA 
Sbjct: 78  GLLSLDNAFDRDDLNAWNERLLRAIDRPLGSPLELVSELKIDGNALALSYRNGVLERAAT 137

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDG  GE+++A +R I  IP  L L N PE +E+RGE +I  N F  +N E  + G   
Sbjct: 138 RGDGQRGEEITANVRTISAIPLRLQLDNPPEWVEIRGEAFIPDNTFAEINAERESRGEAL 197

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNA +G LR+L+P  +  R L+FF + L   ++     Q++ L  +   GF VN  
Sbjct: 198 FANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPAQAQPSSQWDALAWLENAGFRVNPN 257

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
                    I  + +  +  R  LPY  DG+V K++   LQ + G   +SPRW I+ KF 
Sbjct: 258 RSLCADLAEINRFSDHWEQGRHDLPYATDGVVVKLNSLVLQDEAGFTQKSPRWAIALKFP 317

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++A +RLL + +Q+GRTG++TPVA  EPV + G  ++ ATLHN D I  L         
Sbjct: 318 AEEAPSRLLRVVVQVGRTGVITPVAEFEPVALAGTSVSRATLHNADRIAEL--------- 368

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+ +GD ++V++AGE+IP+VV ++   R   A P   P  CP C S +VR+ +     
Sbjct: 369 --DLHLGDTIVVRKAGEIIPEVVRVLPELRPSSATPVQLPEHCPECGSNLVREGDE---- 422

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             AA RC    +C A     L+H+VS+ A +++GLG + ++      D      I AD++
Sbjct: 423 --AATRCVNS-SCPAILRGGLRHWVSKGALDVDGLGSKLIEQLV---DQGLVSSI-ADLY 475

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L     +S  ++      G+ S  NL +++   R  S  R ++ LGI H+G   A+++ 
Sbjct: 476 RLDAALLSSLDRM------GERSANNLIEALTLSRQRSWARQLYGLGIHHIGEVSAKAIT 529

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             +        + N+++        S+  +  +G  +AQ++ +++ NP N   +  L  +
Sbjct: 530 AEF-------PDANSLMEAACTTPDSITAIYGIGTELAQSLQQWFSNPANQQLLNDLRSQ 582

Query: 632 -----VSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
                V  +   H    +S+  +     V TGTL  + R +A+E +   G  V+  +S+ 
Sbjct: 583 GFRFAVDENDHGHVGVAASDQHLTGLTFVLTGTLSTLSRSEAKERIEASGGKVTGSVSKN 642

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           TD ++ G+  GSKL KA  LG+ I++E     LL++
Sbjct: 643 TDYLVAGEEAGSKLTKATTLGITILDEAALHDLLKK 678


>gi|116511279|ref|YP_808495.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
           SK11]
 gi|122940331|sp|Q031P9|DNLJ_LACLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116106933|gb|ABJ72073.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. cremoris SK11]
          Length = 686

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 235/747 (31%), Positives = 368/747 (49%), Gaps = 102/747 (13%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE   KE +    + +Y    YY   +P + DSEYD L      +    P L R++ P
Sbjct: 1   MNIESKIKEFTDQLNQFAYE---YYTLDEPSVEDSEYDRLYHELVKLEQENPQLVRADSP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
               +  GG +     K  H     SL  +++ E+L  +  R+     +K+  +  +  E
Sbjct: 58  T---HWTGGVILDGFVKFRHPYNLYSLGDVFSREELALWEERV-----RKEIVNPEYICE 109

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRG 189
            KIDG  +++ YE G  V AA RGDG +GE+++  ++ I  +P    L + E I+  VRG
Sbjct: 110 LKIDGLSLSLYYENGLLVTAATRGDGTTGENITENVKRIKDVP----LKLKEAIDIVVRG 165

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ + +F  LN E    G  P+ANPRNAA+G LR+L+   +  R L  F++   + S 
Sbjct: 166 EAYLPRQNFAKLNAERELAGAAPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQ--EASP 223

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q E+L+    LGF VN   + A     I  +  E   +R  LPYDIDG+V KV+ 
Sbjct: 224 ATNDTQEEVLEYFEELGFQVNPERKFARNLDEIWEFIEEATRLRDELPYDIDGVVIKVNN 283

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q++LG   ++PRW I++KF  +QA T +L +D  +GRTG++TP A + PV +    +
Sbjct: 284 LAEQEELGFTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP----- 423
             ATLHN DYI+            +DIR  D+V++ +AG++IPKV  +++ +R P     
Sbjct: 344 ARATLHNVDYIQE-----------KDIRNHDKVMIYKAGDIIPKVGKVLLEKRKPAKHLR 392

Query: 424 ---------------------------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
                                      +      P+ CP C S ++   +        A 
Sbjct: 393 KTHRANKYVWTRFGRRSVEKGLVFSKREDNRVKIPTQCPECDSDLIHFEDE------VAL 446

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RC   L C AQ  E+L HF SRDA NI GLG   +   F   D      + AD++ L   
Sbjct: 447 RCVNPL-CPAQIREKLIHFASRDAMNIVGLGPSVISQLF---DKKLVTDV-ADLYQLTVE 501

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
              +  K++  L    VS      +I + R  S E+ +F LGIRHVG + A+ L + + +
Sbjct: 502 DLLTLDKVKETLAQKIVS------AIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFAN 555

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS- 635
            +  +Q     I+           +P +G +IA A+V +++        + LL E+  + 
Sbjct: 556 LRALSQASEEEISE----------IPSLGGVIATAVVSYFET----AGAKTLLDELENAG 601

Query: 636 -----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
                +G    NV   +  K +V TG L  ++R +A+E +  LGA VS  +S+KTD+++ 
Sbjct: 602 LNFAYLG--AVNVEGILSGKTVVLTGKLTTLKRKEAKEKLEALGANVSGSVSKKTDLVVA 659

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           G+  GSKL KAQ LG++I +E+  L L
Sbjct: 660 GEEAGSKLTKAQDLGIEIWSEQDLLDL 686


>gi|312131728|ref|YP_003999068.1| DNA ligase, nad-dependent [Leadbetterella byssophila DSM 17132]
 gi|311908274|gb|ADQ18715.1| DNA ligase, NAD-dependent [Leadbetterella byssophila DSM 17132]
          Length = 680

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 219/713 (30%), Positives = 366/713 (51%), Gaps = 55/713 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  + +L  +I++++D YY  +   I D E+D L +  + +  A P+  +   P+ P  +
Sbjct: 4   KTRIQTLTDQINHYNDRYYLDAVSEISDFEFDTLLKELEELEKAHPEFRQ---PDSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +   V H  P LSL   ++ E++R +  R+ +  + +    I    E K DG 
Sbjct: 61  VGGSITRNFETVRHQFPMLSLSNTYSEEEIRDWDARVKKGLEGEPYEYI---CELKFDGI 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYIS 194
            ++IRYE G       RGDG  G+D++A ++ I ++P   R     + E  EVRGE ++ 
Sbjct: 118 SLSIRYENGILTKGITRGDGVQGDDITANVKTIRSLPLNVRKFEEVLGENFEVRGEGFMP 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
              F ALN E    G    ANPRNAA+G  +  + + + +R L+ FV+      E F   
Sbjct: 178 TKVFEALNKEKEIRGEALLANPRNAAAGTFKLQDSSVVASRKLDCFVYQFISGEERFTTH 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           +   L  ++  GF V+N  ++ +   G++S+ +E    R TL    DG+V KV+ ++ ++
Sbjct: 238 EESFLA-LQSAGFKVSNSWKKVSNIEGVMSFIHEWDEKRHTLECATDGIVIKVNSYAQRE 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW I++K+  +  ST LLD+  Q+GRTG +TPVA L PVN+    +  ATL
Sbjct: 297 KLGFTAKSPRWAIAYKYKAESKSTTLLDVTFQVGRTGTVTPVAELRPVNLSMTTVKRATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + +GD V V++AGE+IPKV  + V  +     P  FP+ 
Sbjct: 357 HNADEIERL-----------GLAIGDEVFVEKAGEIIPKVTGVAV--QSLARIPIVFPTA 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + ++R+         AA  C     C  Q    ++HF+ R A +IE LG+ ++D 
Sbjct: 404 CPSCGTSLLRNEGE------AAWYCPNSEGCLPQIKGSIEHFIQRKALDIESLGEGKIDI 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE--------NILGFGDVSVTNLYDSINKR 545
             ++      IR  AD++ L+        K+           + F + +V N+ + I K 
Sbjct: 458 LLENG----LIRDAADLYQLKYEDLIGLEKVHVDEETGKSKKISFKEKTVKNILEGIAKS 513

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L + +F +GIR VG   A+ LA ++ S Q             N ++  L+ VP VG
Sbjct: 514 KEEPLAKLLFGIGIRFVGETTAQKLAAHFKSMQGLM----------NANYEELLAVPDVG 563

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQR 663
           + +AQ+I +++Q+      +  L          HE+ V+  + +E   L++TGT +   R
Sbjct: 564 EKVAQSIRDYFQSESKQHFIAKLQVAGLQMEAVHEEVVTEGNALEGLSLLYTGTFENFSR 623

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
            + +  +   G  + + +S+K   +IVG+  G SKL+KA++LG+ I+NEEQFL
Sbjct: 624 EELERKIEANGGKLVSGVSKKLSYLIVGEGAGPSKLKKAEELGIPILNEEQFL 676


>gi|256028750|ref|ZP_05442584.1| preprotein translocase subunit SecA [Fusobacterium sp. D11]
 gi|289766653|ref|ZP_06526031.1| NAD-dependent DNA ligase [Fusobacterium sp. D11]
 gi|289718208|gb|EFD82220.1| NAD-dependent DNA ligase [Fusobacterium sp. D11]
          Length = 696

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 224/706 (31%), Positives = 379/706 (53%), Gaps = 50/706 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L ++++ + D YY  +K +I D E+D L +  +++   +P   + ++ + P   +G  + 
Sbjct: 34  LREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYP---QYKEISSPTTSVGASLK 90

Query: 84  LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
            + FK V H  P LSL   +NI ++  FI RI +   KK +  + + LE K+DG  I++ 
Sbjct: 91  ENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISKKQE--LKYCLEVKLDGLSISLT 148

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    F  LN
Sbjct: 149 YRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAID--MEIRGEVVLPLASFEKLN 206

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           +E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E ++ +
Sbjct: 207 NERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGFKSHSESIKFL 266

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G  +++
Sbjct: 267 ESMGIKTTGIFELLETSKEIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIGYTSKT 326

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  A+LHN   I+ 
Sbjct: 327 PRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNISEIQ- 385

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GDRV +++A E+IP+VV  I  +R  + +    P  CPIC  ++
Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQVVKSIKEDRTGNEKIIEEPVNCPICNHKL 435

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+      + +   +C     C A+    +++FVSRDA NI GLG + ++ F    D  
Sbjct: 436 ERE------EGLVDIKCVNE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
           + I+   DI+ L+  ++     +ENI   G  S+ NL +SI + +N   ++ I++LGI  
Sbjct: 486 Y-IKTVVDIYDLKNHREA----LENIDKMGKKSIENLLNSIEESKNRDYDKVIYALGIAE 540

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   ++ LAK        ++ I+ ++    ++   L  +  +G+I A  I+ F++  +N
Sbjct: 541 IGKVTSKILAKA-------SKNIDKLMTMTFEE---LTSIDGIGEIAANEIIAFFKKEKN 590

Query: 622 ICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              ++ L    LK        + +N++     K  +FTGTL+   R + +E + +LG   
Sbjct: 591 QKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKN 650

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
            + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 651 LSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|255324552|ref|ZP_05365669.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum
           SK141]
 gi|255298458|gb|EET77758.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum
           SK141]
          Length = 689

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 223/725 (30%), Positives = 374/725 (51%), Gaps = 75/725 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E + L QE+  H + YY   +P I D+++DAL +R  A+    P+LA    P+ P  ++
Sbjct: 12  REWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLLALEEEHPELAV---PDSPTQQV 67

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G   ++    + H    +SL+ +++  +++ ++ R           +  +  E KIDG  
Sbjct: 68  GAAPSVG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKIDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYIS 194
           I + Y  G+   AA RGDG  GE+++A  R I  IP  L+      +PE+IE+RGEVY+ 
Sbjct: 118 IDLVYRNGRLTTAATRGDGTVGEEITANARVIEDIPHELTGTAEYPVPELIEIRGEVYMR 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
             DF  +N+E  A G+  +ANPRNAA+G LR  +  ++  R L    HGLG         
Sbjct: 178 PEDFEEINEERAADGKDKFANPRNAAAGGLRMKDSAEVKKRRLKMVCHGLGAREGFSPTS 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q++  + +   G PV+   +Q ++   +          R    +++DGLV KVD+ + Q+
Sbjct: 238 QHDAYKAIAAWGLPVSPYTKQVHSAKEVQDEVAHWAEHRHDAIFEMDGLVVKVDDLASQR 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A +EPV + G+ +  ATL
Sbjct: 298 ALGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPYAVMEPVFVSGSTVEMATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+  +K         R G  + +GD V++++AGE+IP+V+  +  +R      ++FP  
Sbjct: 358 HNQSEVK---------RKG--VLIGDTVIIRKAGEIIPEVLGPVREQRDGSEHEWTFPEN 406

Query: 434 CPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-KQQL 491
           CP C ++    L P K G   A  RC    +C AQ   RL++  SR A +IE LG K  +
Sbjct: 407 CPACGTK----LAPQKDGD--ADWRCPNTQSCPAQLSARLEYLASRKALDIEALGEKGAM 460

Query: 492 DF----FFKSEDPAFSIR----IPADIFTLQRRQQTSTTKIENILGFGDVSVT----NLY 539
           D         E   F +     + +D++T ++  +   +K E     G+V V     NL 
Sbjct: 461 DLIDNGILVDESELFELTAKKLLASDVYTAKKDTKDKRSKKE-----GNVKVNTAGQNLL 515

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           +++ + +     R + SL IRHVG   AR+LA  Y S       ++ + A   ++   L 
Sbjct: 516 NNLEEVKGRDFWRVLVSLSIRHVGPIAARALASRYGS-------MDKLRAAKTEE---LA 565

Query: 600 RVPLVGDIIAQAI-----VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
            V  VG  IAQ+      V++++   +  A   +  EV+      E++    +E   +V 
Sbjct: 566 EVDGVGMTIAQSFHDWFEVDWHRTIVDKWAAAGVAMEVAA-----EEHKEQTLEGLTIVV 620

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L+   R  A+E +   G   +  +S+KT  ++ G N GSK +KA++L + I+NE QF
Sbjct: 621 TGSLENFTRDSAKEAIVSRGGKATGSVSKKTSYLVAGANAGSKEDKARELDIPILNESQF 680

Query: 715 LFLLQ 719
             LL+
Sbjct: 681 QQLLE 685


>gi|291536367|emb|CBL09479.1| DNA ligase, NAD-dependent [Roseburia intestinalis M50/1]
          Length = 671

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 220/707 (31%), Positives = 373/707 (52%), Gaps = 55/707 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L  +I+YH D YY    P I D E+D L ++   +    P+L      + P   +
Sbjct: 5   EQIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTK---DSPTQHV 61

Query: 79  GGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG    +    V H++P LSL+ +++ E++  F+ ++    ++ DD    F +E KIDG 
Sbjct: 62  GGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMK---EQLDDPE--FVVEYKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
            + +RYE G    A  RGDG + GEDV+A  + I  + + L  + PE +E+RGEVY+   
Sbjct: 117 SMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLK-DKPEYLEIRGEVYMKNE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKG 253
           DF  +N++   +G+K +ANPRN A+G LR+L+      R L+ FV  + +    +I    
Sbjct: 176 DFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRGMDIMTHT 235

Query: 254 Q-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           Q YE L++    G P+    +   T   + +    +   R  L YDIDG V K++ +S +
Sbjct: 236 QGYEFLKRQ---GIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINRYSDR 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  ++ P+W I++K+  ++  T+LLDI++ +GRTG +TP A  EPV + G  ++ AT
Sbjct: 293 ELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSVSRAT 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D+I  L           D+ +GD ++V ++GE+IPKV ++   +R    + F+ P 
Sbjct: 353 LHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKEVRKEKRTEGWKRFAIPD 401

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C ++  R+      K  A  +CT    C AQ    + +FV RDA +I+G G   ++
Sbjct: 402 VCPVCGAKTERE------KDTADIKCTSP-NCPAQLERHIINFVGRDAMDIKGFGTVYIE 454

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +       I+  ADIF L+  ++      + I+G  + +   L ++I K +      
Sbjct: 455 ELVR----LGYIKDIADIFELKDHREELIE--QGIIG-KEKNTDKLLETIEKAKENDAYM 507

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +   GI +VG   A+++ K + S          I+   + D  +L+ V  VG++ A  I
Sbjct: 508 LLTGFGIPNVGKAAAKTIMKRFSS----------ILDLEDADRDALMEVDDVGEVSADCI 557

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F+ + +N   + A LK +  ++   E + + S +  K +V TGTL  + R +A E V 
Sbjct: 558 FRFFHDEKNKEMI-ARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAELVE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + G  VS  +S+KTD ++ G++ GSKL KAQ+LG+ ++ E +   LL
Sbjct: 617 KYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663


>gi|283954134|ref|ZP_06371659.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414]
 gi|283794413|gb|EFC33157.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414]
          Length = 647

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 224/694 (32%), Positives = 366/694 (52%), Gaps = 74/694 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-PNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYDAL R       AF +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDALIREL----RAFEEQNKDEILKDSPTQKIAPTVQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L+++W++ED+  F     R W K+  +   F +EPK DG  + + YE GK V  A 
Sbjct: 74  ----LKRMWSMEDV--FGESELRAWAKRAKSEKNFFIEPKFDGASLNLLYENGKLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++   E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  G+G+ +  F+K   E++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFSK-HSEVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           V+       ++  Y E+ ++R   P  +DG+V +VDE +L K+LG   + P++M + KF 
Sbjct: 244 VKLCANLDEVLKAYEELLALREKKPMMMDGMVVRVDELALCKELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +    R       S P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+   +C   + C  + +  + HFVS+   NI+GLG+  ++  +K +     I     IF
Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----KITTLESIF 459

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+       +  E + GF +  + NL ++I + R   L  FI +LGI H+G   A+ L+
Sbjct: 460 YLK------FSDFEGLEGFKEKKINNLLNAIEQARECELFCFITALGIEHIGEVAAKKLS 513

Query: 572 KYYLSYQNFAQEINNIIAHNNDDW-----LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
              LS+                DW      +   +   G+ +A ++ EF +   N   ++
Sbjct: 514 ---LSF--------------GKDWHKQSFEAYANLEGFGEQMALSLCEFTR--VNHIRID 554

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
              K ++  + + E    S I  K  V TGTL +  R + +  + +LG  V+  +S+K+D
Sbjct: 555 EFYKLLNLKVEKLEVKSDSAIFGKTFVITGTLSR-PRDEFKALIEKLGGKVNGSVSKKSD 613

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            ++ G+  GSKL KA++LGV  ++E  F  L+++
Sbjct: 614 YVLFGEEAGSKLSKAKELGVNCIDESAFNELIKE 647


>gi|239944478|ref|ZP_04696415.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
 gi|239990936|ref|ZP_04711600.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 11379]
 gi|291447943|ref|ZP_06587333.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
 gi|291350890|gb|EFE77794.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
          Length = 743

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 219/735 (29%), Positives = 364/735 (49%), Gaps = 69/735 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+  + L ++I  H   YY   +P++ D+E+D L R  +A+   +P L     P+ P  +
Sbjct: 18  RETHALLAEQIEEHRFRYYVKDQPVVSDAEFDRLLRSLEALEDEYPPL---RTPDSPTQQ 74

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           + G        V H    LSL+  ++ E+L  +  R+ +     D +   F  E K+DG 
Sbjct: 75  VAGPYITEFTSVEHRERMLSLDNAFDDEELAAWADRVAKETGTPDHH---FLCELKVDGL 131

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            + + YE G+   AA RGDG +GED++  +R I  IP R+   +IP ++E+RGEV+    
Sbjct: 132 AVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALVEIRGEVFFPME 191

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN  ++A   KP+ANPRNAA+G LR+ +P    +R L+  VHG+G    +      
Sbjct: 192 GFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIGAHEGLRIDRLS 251

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           +    +   G P     R  ++  G+  +       R ++ ++IDG+V K+DE  LQ +L
Sbjct: 252 QAYDLLHSWGLPTARHNRVVDSLAGVREFIAYFGEHRHSVEHEIDGVVVKLDEIPLQGRL 311

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  ATLHN
Sbjct: 312 GSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFATLHN 371

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ++ +K            + + +GD V++++AG+VIP+++  +V+ R    + F  P+ CP
Sbjct: 372 QNVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEKAFEMPTHCP 420

Query: 436 ICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
            C +    +L P K G +    RC     C AQ  ER+ +   R + +I+  G       
Sbjct: 421 ECGT----ELRPMKEGDIDL--RCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAAAAL 474

Query: 495 FKSEDPAFSI-RIPADIFTL--------------------QRRQQTSTTKIENIL----G 529
            +  +PA  + +  +D+F+L                    +R  +T   KI  +     G
Sbjct: 475 TRPLEPAEPVLKDESDLFSLTIEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQG 534

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
               +   + + I   +   L R +  L IRHVG   A+ LA+ + S     +     +A
Sbjct: 535 EPKKNAVAMLEGIAAAKEAPLARILTGLSIRHVGPVAAQELARQFRSVDRIDEATEEELA 594

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVS 644
             +           VG  IA +I +++    +    E L K     +     G  E    
Sbjct: 595 AADG----------VGPTIAASIKQWFAEDWH---REILRKWREAGVRMADEGSDEDEGP 641

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL    R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 642 RPLEGLTVVVTGTLAGHTRDGAKEALQTLGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQL 701

Query: 705 GVKIMNEEQFLFLLQ 719
            V +++E+ F  LLQ
Sbjct: 702 KVPVLDEDGFAILLQ 716


>gi|220906114|ref|YP_002481425.1| NAD-dependent DNA ligase LigA [Cyanothece sp. PCC 7425]
 gi|254781305|sp|B8HV17|DNLJ_CYAP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219862725|gb|ACL43064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7425]
          Length = 738

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 230/748 (30%), Positives = 366/748 (48%), Gaps = 99/748 (13%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I Q   EL  L Q  SY    YY    PI+ D  YD L R    +   +P+L     P+ 
Sbjct: 20  IRQRVLELRQLVQRASY---AYYVLDAPILEDVVYDQLYRELQDLETQYPELL---TPDS 73

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-----F 128
           P  ++G +       V H IP  SLE  + + D++ +  R  R  Q   + S       +
Sbjct: 74  PTQRVGEQPATQFVSVQHRIPLYSLENAFAVADMQAWQDRWQRQGQAIGEQSATLRSPEY 133

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187
             E KIDG+ + + YE G  V  A RGDG  GED++A +R I +IP R+   + P I+EV
Sbjct: 134 VCELKIDGSALALTYENGVLVRGATRGDGVYGEDITANVRTIRSIPLRLDWPDPPPIVEV 193

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL--- 243
           RGE ++  + F  LN E    G   +ANPRNAA+G LR+L+   +  R L+FF + L   
Sbjct: 194 RGEAFLPLDVFHRLNQEREQAGESLFANPRNAAAGTLRQLDARIVAKRRLDFFAYTLHLP 253

Query: 244 ------------GKTSEIFA-----------------------------KGQYEMLQKMR 262
                        +  ++ A                             + Q++ L+ ++
Sbjct: 254 LASARSATQPAAAQQLDLLAVAQSDPAVAAQQLDLSSASQAESVTTHLPQTQWQSLELLQ 313

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
            +GF VN   +   T   +  YY+     R  LPY  DG+V K++   LQ+ LG   + P
Sbjct: 314 QIGFRVNPHRQLCPTLADVRQYYDHWNHGRLDLPYMTDGVVVKLNSLRLQEHLGFTQKFP 373

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW I+ K+  +QA T +L+I + +GRTG LTPVA L PV + G  ++ ATLHN D +  L
Sbjct: 374 RWAIAWKYEPEQAVTEVLNISVNVGRTGALTPVAELRPVQLAGTTVSRATLHNRDRLAEL 433

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                      D+ +GD+V++ +AGE+IP+++ +    R  DA+P+  P+ CP C   VV
Sbjct: 434 -----------DLHIGDKVVIHKAGEIIPEILQVFPELRPADARPYQLPTHCPECGQPVV 482

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           + ++       A  RC   ++C A     + H+V RDA +I+G+G++      +  D   
Sbjct: 483 QPVDE------AVTRCL-NVSCPAIVRGAIVHWVGRDAMDIDGVGEK---LVRQLVDRGL 532

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
              + AD++ L   Q  +  ++ N L    V+      +I K ++    R ++ LGIRHV
Sbjct: 533 VNSV-ADLYRLTVAQLLTLERMGNKLAEKVVA------AIAKSQSRPWSRVLYGLGIRHV 585

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G+  A+ L   + S       +  ++A + +D   +  V  +G  IAQ+IV+++Q P N 
Sbjct: 586 GSVNAQVLTTAFPS-------VERLMAASAED---IEAVHGIGPEIAQSIVQWFQTPANH 635

Query: 623 CAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
             +E L    ++    ++      +   +  K  V TGTL  + R +A+  + Q G  V+
Sbjct: 636 SLIEQLSAAGVQLAQDTVAVPPSQLPQPLAGKTFVLTGTLPTLSRDEARSMIGQAGGKVT 695

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGV 706
             +S+KTD ++VG + GSKL+KA QLG+
Sbjct: 696 DSVSKKTDFLVVGADAGSKLDKAGQLGI 723


>gi|123774771|sp|Q47SC6|DNLJ_THEFY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71914739|gb|AAZ54641.1| NAD-dependent DNA ligase [Thermobifida fusca YX]
          Length = 745

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 244/737 (33%), Positives = 367/737 (49%), Gaps = 74/737 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           R+  + L Q++   DD  Y+Y    PII D+EYD L      +   +P L     P+ P 
Sbjct: 31  RERHARLSQDL---DDYSYRYYLGSPIISDAEYDQLMAELRDLEAQYPSLV---TPDSPT 84

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G  ++     V H     SL+  ++   L  +  R+       +     F  E KID
Sbjct: 85  QKVGAPISNEFAPVEHLERMQSLDNAFSDAQLEAWAHRV-----SAEVPVDAFLCELKID 139

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVY 192
           G  + + YEKG+ V AA RGDG  GED++  IR I T+P  L  +    PE++EVRGEV+
Sbjct: 140 GLAVALVYEKGRLVRAATRGDGRIGEDITLNIRTIDTVPLRLDESRYPAPELLEVRGEVF 199

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           +    F  LN  +   G+ P+ANPRNAA+G LR+ +P    +R L+  VHG+G    +  
Sbjct: 200 LPVKAFEQLNSRLADEGKPPFANPRNAAAGSLRQKDPRVTASRPLSMLVHGIGAHRGVTI 259

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q +  + +   G PV++ +R  +T   +  Y       R    Y+IDG+V KVD+ SL
Sbjct: 260 THQSQSYELLAAWGLPVSDRIRVVSTLDEVREYIAYYAEHRHDPEYEIDGVVVKVDDVSL 319

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T+LLDI   +GRTG +TP A LEPV + G+ +  A
Sbjct: 320 QRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIKTSVGRTGRVTPYAVLEPVKVAGSEVEFA 379

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN         + +V R G  + +GD V+V++AG++IP+VV  +V +R    +PF  P
Sbjct: 380 TLHN---------AQEVARKG--VLIGDTVVVRKAGDIIPEVVGPVVEKRTGTERPFVMP 428

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S + +    K G +    RC     C  Q  ERL     R A +IE LG    
Sbjct: 429 TECPECGSPLGQQ---KEGDV--DLRCPNTRYCKGQLRERLAFIAGRKALDIEALGYVAA 483

Query: 492 DFFFKSEDPA-FSIRIPADIFTLQRRQ-----------QTSTTKIENILGFGDVS----- 534
               +  +PA   +R   D+F+L   Q            T+  KI+   G   V      
Sbjct: 484 TALTQPLEPAEPPLRDEGDLFSLTVEQLLPIRTLVLDPDTAEPKIDPKTGKPKVVSFFAN 543

Query: 535 --------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                   V  L+  + + +   L R + +L IRHVG   A  LA+++ S    AQ    
Sbjct: 544 QKGEPKKIVEKLFQQLEEAKKRPLWRVLVALSIRHVGPRAAEDLARHFRSLDAIAQASEE 603

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                      L  V  +G  IA++IV+++    +   VE   K  +  +   E+     
Sbjct: 604 ----------ELEAVEGIGPTIARSIVDWFSVDWHREIVE---KWRAAGVRMEEEGADDG 650

Query: 647 ---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              ++    V TGTL+K  R  A+E V +LG  V+  +SRKTD ++VG NPGSK +KA +
Sbjct: 651 PRLLDGITTVITGTLEKYSRDGAKEAVQKLGGRVTGSVSRKTDFVVVGANPGSKYDKAVK 710

Query: 704 LGVKIMNEEQFLFLLQQ 720
           LGV I++E  F  LL Q
Sbjct: 711 LGVPILDEAGFEVLLTQ 727


>gi|161723110|ref|YP_288664.2| NAD-dependent DNA ligase LigA [Thermobifida fusca YX]
          Length = 731

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 244/737 (33%), Positives = 367/737 (49%), Gaps = 74/737 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           R+  + L Q++   DD  Y+Y    PII D+EYD L      +   +P L     P+ P 
Sbjct: 17  RERHARLSQDL---DDYSYRYYLGSPIISDAEYDQLMAELRDLEAQYPSLV---TPDSPT 70

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G  ++     V H     SL+  ++   L  +  R+       +     F  E KID
Sbjct: 71  QKVGAPISNEFAPVEHLERMQSLDNAFSDAQLEAWAHRV-----SAEVPVDAFLCELKID 125

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVY 192
           G  + + YEKG+ V AA RGDG  GED++  IR I T+P  L  +    PE++EVRGEV+
Sbjct: 126 GLAVALVYEKGRLVRAATRGDGRIGEDITLNIRTIDTVPLRLDESRYPAPELLEVRGEVF 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           +    F  LN  +   G+ P+ANPRNAA+G LR+ +P    +R L+  VHG+G    +  
Sbjct: 186 LPVKAFEQLNSRLADEGKPPFANPRNAAAGSLRQKDPRVTASRPLSMLVHGIGAHRGVTI 245

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q +  + +   G PV++ +R  +T   +  Y       R    Y+IDG+V KVD+ SL
Sbjct: 246 THQSQSYELLAAWGLPVSDRIRVVSTLDEVREYIAYYAEHRHDPEYEIDGVVVKVDDVSL 305

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T+LLDI   +GRTG +TP A LEPV + G+ +  A
Sbjct: 306 QRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIKTSVGRTGRVTPYAVLEPVKVAGSEVEFA 365

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN         + +V R G  + +GD V+V++AG++IP+VV  +V +R    +PF  P
Sbjct: 366 TLHN---------AQEVARKG--VLIGDTVVVRKAGDIIPEVVGPVVEKRTGTERPFVMP 414

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S + +    K G +    RC     C  Q  ERL     R A +IE LG    
Sbjct: 415 TECPECGSPLGQQ---KEGDV--DLRCPNTRYCKGQLRERLAFIAGRKALDIEALGYVAA 469

Query: 492 DFFFKSEDPA-FSIRIPADIFTLQRRQ-----------QTSTTKIENILGFGDVS----- 534
               +  +PA   +R   D+F+L   Q            T+  KI+   G   V      
Sbjct: 470 TALTQPLEPAEPPLRDEGDLFSLTVEQLLPIRTLVLDPDTAEPKIDPKTGKPKVVSFFAN 529

Query: 535 --------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                   V  L+  + + +   L R + +L IRHVG   A  LA+++ S    AQ    
Sbjct: 530 QKGEPKKIVEKLFQQLEEAKKRPLWRVLVALSIRHVGPRAAEDLARHFRSLDAIAQASEE 589

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                      L  V  +G  IA++IV+++    +   VE   K  +  +   E+     
Sbjct: 590 ----------ELEAVEGIGPTIARSIVDWFSVDWHREIVE---KWRAAGVRMEEEGADDG 636

Query: 647 ---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              ++    V TGTL+K  R  A+E V +LG  V+  +SRKTD ++VG NPGSK +KA +
Sbjct: 637 PRLLDGITTVITGTLEKYSRDGAKEAVQKLGGRVTGSVSRKTDFVVVGANPGSKYDKAVK 696

Query: 704 LGVKIMNEEQFLFLLQQ 720
           LGV I++E  F  LL Q
Sbjct: 697 LGVPILDEAGFEVLLTQ 713


>gi|171920530|ref|ZP_02695360.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|171903225|gb|EDT49514.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
          Length = 673

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 223/714 (31%), Positives = 380/714 (53%), Gaps = 64/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD   R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130
           P  ++GG ++    KV H  P LSL   ++  DLRKF        Q   + S+    + +
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFD-------QDNQNASVDLKGYVV 110

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189
           EPKIDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRG
Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E
Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++ 
Sbjct: 230 LGIKTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINN 289

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +  ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++
Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIV 349

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+
Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVNLSKRLANSVPY 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
              + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+  
Sbjct: 399 ESITNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCINIEGMSD 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545
             ++ F+     A  I+  AD++ LQ+ ++    S  KI+      D S +NL +SIN  
Sbjct: 453 AIINKFY----DANLIKNVADLYYLQKHKEFILASDFKIK------DKSFSNLINSINNS 502

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SLE  + + GIRHVG  +A+ LAK + +           + H N D L+   V   G
Sbjct: 503 KTRSLEFLLTAFGIRHVGPNLAKKLAKQFKTMTT--------LMHANFDELT--NVDACG 552

Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           +  A +++ ++ +  NIC +  L      ++ +   I     N+  E +NK  V TG+  
Sbjct: 553 EKAALSLINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS 612

Query: 660 KIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            I R + +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+  E
Sbjct: 613 -ISRDEIKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKIIENE 665


>gi|254422498|ref|ZP_05036216.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335]
 gi|196189987|gb|EDX84951.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335]
          Length = 694

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 237/726 (32%), Positives = 359/726 (49%), Gaps = 73/726 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L IE    EL S  Q+ SY    YY    P + DS YD L R    +   +P L  S+ P
Sbjct: 20  LEIETRAAELRSQLQKASY---AYYVLDAPELPDSVYDRLYRELQTLEDQYPGLQTSDSP 76

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++G E       V H+IP  SLE  ++ E+   +  R  R   + D        E
Sbjct: 77  T---QRVGAEPAEQFTSVRHNIPLYSLENAFDTEEYLDWQARWQRL--EPDVGETTAVAE 131

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI------PEII 185
            KIDG  + + YE G  +    RGDG +GED++  +R I TIP  L L+I      P ++
Sbjct: 132 LKIDGNALALTYENGMLIRGVTRGDGIAGEDITQNVRTIRTIP--LRLHIENGQAPPPVV 189

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL- 243
           EVRGE ++  + F  +N +  A G   +ANPRNAA+G LR+L+   +  R L+FF + + 
Sbjct: 190 EVRGEAFLPLDVFDDINQKRQAEGTALFANPRNAAAGTLRQLDAKIVAERQLDFFAYTVL 249

Query: 244 ---GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
              G         Q+  L  ++ L F VN   +       + SYY+E +  R  LPY  D
Sbjct: 250 MPEGTGDLDAPTTQWTALDLLQTLRFRVNPHRKLCQRAAEVASYYDEWEEKRHDLPYLTD 309

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+D F LQ +LG   + PRW I+ K+  ++  T L  I +Q+GRTG +TPVA L P
Sbjct: 310 GVVVKLDSFELQDRLGFTNKFPRWAIALKYPAEEVPTTLNKITVQVGRTGAITPVAELSP 369

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G  ++ ATLHN D +  L           D+ +GD V+V++AGE+IP+VV ++ + 
Sbjct: 370 VQLAGTTVSRATLHNADRLIEL-----------DLHLGDTVVVRKAGEIIPEVVRVLSDL 418

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R   A+ +  P+ CP+C   VV+      G+  A  RC    +C A     L+H+ SRDA
Sbjct: 419 RPKGAKAYQLPTNCPVCDQPVVK----PEGE--AVTRCVNQ-SCPAILSGSLRHWASRDA 471

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTN 537
            +I GLG++ +  +    D +    I AD++ L          +E++L     G      
Sbjct: 472 LDISGLGERLVQSWI---DQSVVTSI-ADLYDL---------TLEDLLPLERMGKQLANK 518

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +I   +     + ++ LGIR VG+  A+ LA  + S    A    ++IA        
Sbjct: 519 LLQAIALSKQKPWAKVLYGLGIRLVGSTNAQILANRFPSVAMLAAADESVIAQ------- 571

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRN---ICAVEA--LLKEVSPSIGRHEKNVSSEIENKKL 652
              +  +G  IAQ++ +++Q P N   I  +EA  L  E +P   +        +  K  
Sbjct: 572 ---IYGIGPEIAQSVRQWFQLPANQQLIARLEAAGLQLEATP---QKIDQRPQPLMGKSF 625

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  ++R +A+  +   G  VS   S KTD ++VG+N GSK  KA +LG+K + E 
Sbjct: 626 VLTGTLPTLKRAEAKAQIQAAGGRVSGAPSAKTDYVVVGENAGSKQAKADELGLKQLTEA 685

Query: 713 QFLFLL 718
           + + LL
Sbjct: 686 ELIELL 691


>gi|268679995|ref|YP_003304426.1| DNA ligase, NAD-dependent [Sulfurospirillum deleyianum DSM 6946]
 gi|268618026|gb|ACZ12391.1| DNA ligase, NAD-dependent [Sulfurospirillum deleyianum DSM 6946]
          Length = 648

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 224/686 (32%), Positives = 357/686 (52%), Gaps = 68/686 (9%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    PI  D EYD L     A     P  A   D + P  ++GG +     K +H  
Sbjct: 19  AYYVDDAPIASDEEYDRLYHEILAFEKENPLFA---DESSPTKRVGGMVLEGFNKASHKA 75

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
              S+E +++  DL  +I R+     KK   +  F  EPK DG  + + Y+KG    A  
Sbjct: 76  RMWSMEDVFDEHDLDAWIERV-----KKVKENFTFYCEPKFDGASMNLIYDKGVLQQAIT 130

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GEDV+  ++ I +IP  L +    +IE+RGEV I K DF  LN+E +      +
Sbjct: 131 RGDGSIGEDVTQNVKTIGSIP--LQIAYEGLIEIRGEVVIKKADFECLNEERLHTNEPLF 188

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRC---LGFPV 268
           ANPRNAA+G LR+L+ T +T  R L F+  G+G+   +    Q  + +KMR    LGF  
Sbjct: 189 ANPRNAAAGSLRQLD-TSVTAKRKLMFYPWGIGENQLV----QTRLSEKMRFVYDLGFLQ 243

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
              +        +   Y+E+   R  +   +DG+V KVDE +LQ++LG   + P+WM++ 
Sbjct: 244 PPRIVVTQNVEDVHMLYHELIETRDAIEMMMDGMVVKVDEIALQEELGYTVKYPKWMVAF 303

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           KF   +  T+L  I +Q+GRTG++TPVA +E VNI G ++  ATLHN D I+        
Sbjct: 304 KFPAIEKVTKLRAITLQVGRTGVVTPVAEVEAVNIEGVVVERATLHNFDEIE-------- 355

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
               +DIR+GD V++ R+G+VIPK++ ++V  R         P  CP+C   ++ +    
Sbjct: 356 ---RKDIRIGDSVIIIRSGDVIPKIIKVLVERRDGTEVIPKRPLVCPVCGGELLDE---- 408

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
            G L+   +C   L+C A+ +  + HF S+ A NI+GLG + ++  + ++     ++   
Sbjct: 409 -GALI---KCQ-NLSCDARVVGAMIHFASKKALNIDGLGDKIIEQLY-AQKVVLHVK--- 459

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D++TL   Q  +      + GF      NL D+I + + ++LE+FI +LGI H+G   A+
Sbjct: 460 DLYTLSLEQLLA------LEGFKVKKAQNLLDAIAQSKGVALEKFINALGIEHIGEVAAK 513

Query: 569 SLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +A+ + L +     E              +I +   G+ +A+++VEF     N    + 
Sbjct: 514 KIARTFGLEWLEATHE-------------QIIGLEGFGEEMAKSLVEFIH--VNAVETKE 558

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L+  ++P   + E    S    K +V TG++ K  R + +  +  LGA VS  +S+KTD 
Sbjct: 559 LMGIIAPVASKLEIT-ESVFTGKTVVLTGSMSK-SRDEMKAMLESLGAKVSGSVSKKTDF 616

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           +I G+  GSKL+KA +LGVK ++E +
Sbjct: 617 VIFGEEAGSKLDKALELGVKTLSEAE 642


>gi|290580089|ref|YP_003484481.1| DNA ligase [Streptococcus mutans NN2025]
 gi|254996988|dbj|BAH87589.1| DNA ligase [Streptococcus mutans NN2025]
          Length = 652

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 228/705 (32%), Positives = 362/705 (51%), Gaps = 71/705 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L Q ++ +   YY    P + D+EYD L R    +   FP+   S   N P ++
Sbjct: 2   KERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDILS---NSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K  H  P  SL+  ++ E+L  F  RI   + + D     +  E KIDG 
Sbjct: 59  VGDLVLDGFEKYRHEYPLFSLQDAFSREELNAFDRRIKAEFPQAD-----YLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISK 195
            I++ Y  G+    A RGDG  GE+++  ++ +  IP    L++PE I+  VRGE Y+ K
Sbjct: 114 SISLTYVNGRLRVGATRGDGTVGENITENLKRVRDIP----LHLPENIDLTVRGECYLPK 169

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKG 253
             F  +N E    G   +ANPRNAA+G LR+L+   + +     F     G T+   A  
Sbjct: 170 ASFKTINAERRENGETEFANPRNAAAGTLRQLDTKVVAKRKLATFIYQEAGPTA---ASS 226

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q  +L+    LGF VN     +++   I  +  ++   R+ L YDIDG+V KV+  +LQ+
Sbjct: 227 QEAVLESFAKLGFTVNPRHIISSSMDAIWQFIEDVAKERAELAYDIDGVVIKVNSLALQE 286

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   ++PRW I++KF  ++ +  +L +D  +GRTG++TP A L PV + G  ++ ATL
Sbjct: 287 ALGFTVKAPRWAIAYKFPAEEKTAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATL 346

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPS 432
           HN DYI             +DIR+GD V+V +AG++IP V+ ++ N+R  D Q P   P+
Sbjct: 347 HNVDYI-----------AEKDIRIGDIVVVYKAGDIIPAVLHVVENKR--DQQVPLPIPT 393

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP CQS ++   +        A RC     C AQ  E L HF SRDA NI GLG   ++
Sbjct: 394 VCPSCQSELIHFEDE------VALRCVNP-RCPAQLKEELIHFASRDAMNIIGLGPAIVE 446

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F +E     I   ADI+      Q +   +  + G  + S T LY +I   +  S E+
Sbjct: 447 KLFTAE----LICDVADIY------QLTPENLMQLEGIKEKSATKLYKAIQASKANSAEK 496

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRHVG++ +R L + + S +  A    + IA  +           +G +IA+++
Sbjct: 497 LLFGLGIRHVGSKASRLLMERFESLEQLAAADFDDIAAIDG----------LGIVIAESL 546

Query: 613 VEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             ++         + LL E+  +      +G+   +  + +    +V TG L  + R +A
Sbjct: 547 KTYFAT----AGAQKLLIELKTAGLNLTYLGKKTAS-DAALTGMTIVLTGKLANLTRSQA 601

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +E +  LGA V   +S+KT ++I G + GSKLEKA+ LG++I +E
Sbjct: 602 KEKLQSLGANVVGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDE 646


>gi|294784746|ref|ZP_06750034.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27]
 gi|294486460|gb|EFG33822.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27]
          Length = 696

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 228/721 (31%), Positives = 385/721 (53%), Gaps = 64/721 (8%)

Query: 19  KELSSLEQEISYHDD------CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +EL+ LE+ +   +D       YY  +  +I D E+D L +  +++   +P   + ++ +
Sbjct: 23  QELNDLEKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYP---QYKEIS 79

Query: 73  GPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P   +G  +  + FK V H+ P LSL   +NI ++  FI RI +   K+ +  + + LE
Sbjct: 80  SPTTSVGASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPKEQE--LKYCLE 137

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV
Sbjct: 138 VKLDGLSISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAID--MEIRGEV 195

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            +    F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++ 
Sbjct: 196 VLPLASFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKGRGLDAYFYFLVEADKLG 255

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +
Sbjct: 256 LKSHSESIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEIN 315

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L  ++G  +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  
Sbjct: 316 LWNEIGYTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVELSGSKVKR 375

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN   I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    
Sbjct: 376 ASLHNISEIQ-----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEE 424

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C  ++ R+      + +   +C     C A+    +++FVSRDA NI GLG + 
Sbjct: 425 PVCCPVCNHKLERE------EGLVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKI 477

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F    D  + I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   
Sbjct: 478 VEKFI---DLGY-IKTVVDIFDLKEHREA----LENIDKMGKRSIENLLNSIEESKNRDY 529

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ I+SLGI  +G   ++ LAK        ++ I+ ++    ++   L  +  +G+I A 
Sbjct: 530 DKVIYSLGIPFIGKVASKILAKA-------SKNIDKLMTMTFEE---LTSIEGIGEIAAN 579

Query: 611 AIVEFYQNPRNICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            I+ F++  +N   +E+L        +KE   ++    +N++     K  +FTGTL+   
Sbjct: 580 EIIAFFKKEKNQKIIESLKEKGLKFEIKESETNV----QNINPNFAGKNFLFTGTLKHFT 635

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQY 721
           R + +E + +LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  ++
Sbjct: 636 REQIKEEIEKLGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKF 695

Query: 722 N 722
           +
Sbjct: 696 D 696


>gi|33241290|ref|NP_876232.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|81663882|sp|Q7V9J2|DNLJ_PROMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33238820|gb|AAQ00885.1| NAD-dependent DNA ligase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 685

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 218/730 (29%), Positives = 373/730 (51%), Gaps = 84/730 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +S L   ++  +  YY    P+I D+ +D L R    +   +P L     P+ P  ++
Sbjct: 8   KRISELRSLLNKANHAYYILDSPLIEDAVFDRLYRELIELEKQYPSLV---TPDSPSQRL 64

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +       + H IP  SL+  +N ++L  + +R+    QK   +      E KIDG  
Sbjct: 65  GNKPATKFESIKHRIPLQSLDNAFNFDELNYWHSRM----QKHLKSHSAMVCELKIDGNA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197
           + + Y  G     A RGDG  GE+++A ++ I +IP  L L N P  +E+RGE +I    
Sbjct: 121 LALSYVNGVLTRGATRGDGAEGEEITANVKTIVSIPLSLHLQNPPAWVEIRGEAFIPNKV 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL--------GKTSE 248
           F++LN E +   ++ +ANPRNA SG LR+L+   + +R+L+FF + +        G+T  
Sbjct: 181 FISLNKERLKEEKQLFANPRNACSGTLRQLDSRIVASRHLDFFAYTIHLPDDWIPGETDP 240

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              KGQ+E L  ++  GF VN   +  +    +  +  + +  R  LPY  DG+V K+D+
Sbjct: 241 KKPKGQWEALLWLKAAGFRVNPNAKLISQPDQVEKFCIDWEKRRHQLPYTTDGIVIKIDD 300

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F LQK LG   ++PRW I+ K+  ++A T+L  +  Q GRTG +TPVA   P+ +GG L+
Sbjct: 301 FKLQKTLGITQKAPRWAIALKYPAEEAPTQLNKLIFQTGRTGTVTPVAEFNPIPLGGTLV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN + +  L           DI  GD +++++AGE+IP+V+ +I   R  +A+  
Sbjct: 361 SKATLHNANRLSEL-----------DIHEGDTIVIRKAGEIIPEVIRVIKELRPNNAKKL 409

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C S+++++    TG+  AA +C     C A     L+H+VS+ A NI+G G 
Sbjct: 410 VLPEKCPECNSKLLKE----TGE--AATKCLNN-DCPAILRGVLRHWVSKGAMNIDGFGT 462

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   K +     I+  A I+ L+ +       +EN+   G  S   L   IN  +  
Sbjct: 463 KLVEQLVKRK----IIKSIAGIYELKEKN------LENLERMGTKSAEKLLIEINNSKKQ 512

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-------QEINNIIAHNNDDWLSLIRV 601
              + ++ LGI H+G   A+++A+ + S    A       + I+NI              
Sbjct: 513 PWHKQLYGLGILHIGEANAKAIAEVFPSISLLADAAIASPESISNIYG------------ 560

Query: 602 PLVGDIIAQAIVEFYQNPRNICAV-EALLKEVSP-SIGRHEKNVSSEIEN---------- 649
             +G  I +++ +++      C++ + L+KE+    I     N    I+N          
Sbjct: 561 --IGSEITESLHKWFN-----CSINQNLIKELKDLGIALERVNEEGAIDNILMQEKLQFS 613

Query: 650 -KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K  V TGT+  + R   +E + + G  V++ +S KT+ ++ G+ PG+KL+KA++LG+K+
Sbjct: 614 GKTFVITGTMPSLSRANLEELIEREGGKVNSSVSSKTNYLVAGEKPGNKLKKAKELGIKV 673

Query: 709 MNEEQFLFLL 718
           +NE++ + L+
Sbjct: 674 INEQELMTLI 683


>gi|256846124|ref|ZP_05551582.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2]
 gi|256719683|gb|EEU33238.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2]
          Length = 696

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 228/721 (31%), Positives = 385/721 (53%), Gaps = 64/721 (8%)

Query: 19  KELSSLEQEISYHDD------CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +EL+ LE+ +   +D       YY  +  +I D E+D L +  +++   +P   + ++ +
Sbjct: 23  QELNDLEKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYP---QYKEIS 79

Query: 73  GPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P   +G  +  + FK V H+ P LSL   +NI ++  FI RI +   K+ +  + + LE
Sbjct: 80  SPTTSVGASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPKEQE--LKYCLE 137

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV
Sbjct: 138 VKLDGLSISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAID--MEIRGEV 195

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            +    F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++ 
Sbjct: 196 VLPLASFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKGRGLDAYFYFLVEADKLD 255

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +
Sbjct: 256 LKSHSESIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEIN 315

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L  ++G  +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  
Sbjct: 316 LWNEIGYTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVELSGSKVKR 375

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN   I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    
Sbjct: 376 ASLHNISEIQ-----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEE 424

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C  ++ R+      + +   +C     C A+    +++FVSRDA NI GLG + 
Sbjct: 425 PVCCPVCNHKLERE------EGLVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKI 477

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F    D  + I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   
Sbjct: 478 VEKFI---DLGY-IKTVVDIFDLKEHREA----LENIDKMGKRSIENLLNSIEESKNRDY 529

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ I+SLGI  +G   ++ LAK        ++ I+ ++    ++   L  +  +G+I A 
Sbjct: 530 DKVIYSLGIPFIGKVASKILAKA-------SKNIDKLMTMTFEE---LTSIEGIGEIAAN 579

Query: 611 AIVEFYQNPRNICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            I+ F++  +N   +E+L        +KE   ++    +N++     K  +FTGTL+   
Sbjct: 580 EIIAFFKKEKNQKIIESLKEKGLKFEIKESETNV----QNINPNFAGKNFLFTGTLKHFT 635

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQY 721
           R + +E + +LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  ++
Sbjct: 636 REQIKEEIEKLGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKF 695

Query: 722 N 722
           +
Sbjct: 696 D 696


>gi|228469580|ref|ZP_04054573.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3]
 gi|228308930|gb|EEK17605.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3]
          Length = 679

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 216/718 (30%), Positives = 363/718 (50%), Gaps = 68/718 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+  L + I  H+  YY  + P I D++YDAL +R   +    P+ A   DP  P  ++G
Sbjct: 9   EIEQLRKTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPEFA---DPTSPSLRVG 65

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            + N +  +V H  P LSL   +N +++ +   R        D   + +  E K DG+ I
Sbjct: 66  RDRNDAFVQVAHEQPMLSLSNTYNYDEIAEICKRTDTLLATDD---VPWVAEMKYDGSSI 122

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSL-NIPEI----IEVRGEVYI 193
           ++ YE+G    A  RGDG  G+DV+  +R I ++P R+ S+   P+     IEVRGEV +
Sbjct: 123 SLIYEEGVLARAVTRGDGTLGDDVTVNVRTIQSVPLRLHSIAGHPDYTRGRIEVRGEVLL 182

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEI 249
              +F  LN E  A    P+ANPRNAA+G L+ LN   + +     + ++++ L   + +
Sbjct: 183 PFKEFERLNGERTAESEAPFANPRNAAAGTLKTLNSRIVAQRRLLCICYYLYALDDETRL 242

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                YE ++ +  +GF       +++    +  Y +E    R  LPY  DG+V KVD  
Sbjct: 243 -PDSYYERMKLLEEMGFDTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGIVLKVDSL 301

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ LG  A+SPRW  ++K+  + A   LL +D Q+GR+GI+TPVA +EPV I G ++ 
Sbjct: 302 TQQRVLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGIVTPVANVEPVLISGTVVR 361

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNE++IK L           D+   D V +++ GE+IPK+  +  + R P+A+P  
Sbjct: 362 RATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVEPSLRRPEAEPVR 410

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C +  ++ ++   G     + C    AC  Q + R++H+ +R A +I  +G +
Sbjct: 411 LPERCPACGA-PLQQIDGSVG-----YYCVNSYACPPQIMGRIEHYCTRRAADI-NVGPE 463

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D  F        I    D++ L      + + +  +  F + S+ NL  SI + +   
Sbjct: 464 TIDALFDRH----LIENIDDLYKL------TASDLAQLPNFKEKSINNLLASIEQSKGRP 513

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ +GIR VG   A++LA+++ S    AQ               L  +P VG  IA
Sbjct: 514 FARLLYGIGIRFVGEGTAKTLARHFQSIDRLAQATA----------YELQALPDVGPKIA 563

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--------SSEIENKKLVFTGTLQKI 661
           + +V F+   RN    + L+ E+     R E+          S+ +E +++V +G+  + 
Sbjct: 564 EQVVYFFSLERN----QQLIAELQRCGVRLEECAEEATDMPQSNRLEGERIVISGSFTQH 619

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            R + ++ + Q G      +S +T  +++G + G SK  KA+QLG+ ++ EE+FL  L
Sbjct: 620 SRDEYKQLIEQHGGTNVGSISSRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLARL 677


>gi|254776288|ref|ZP_05217804.1| NAD-dependent DNA ligase LigA [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 681

 Score =  333 bits (854), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 225/712 (31%), Positives = 361/712 (50%), Gaps = 49/712 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++   L + +  H   YY    PII D+E+DAL     A+    P+L  ++ P   +  
Sbjct: 2   RRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPELRVADSPTQLVGG 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G   + +  +  H    LSL+ +++ ++L  +  R+    + +      +  E KIDG 
Sbjct: 62  AGFATDFA--EAAHLERMLSLDDVFDTDELIAWSNRV----ENEIGKDPHYLCELKIDGV 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193
            +++ Y  G+   AA RGDG  GEDV+   R I  +P  LS      +P ++EVRGEV+ 
Sbjct: 116 ALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSPSDDFPVPALLEVRGEVFF 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HG+G+T     K
Sbjct: 176 LLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTEGFSPK 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q+E    +   G PV     +      +   + Y+ E    R  L ++IDG+V KVD+ 
Sbjct: 236 TQHEAYTALSVWGLPVAEQTARVRGLAAVQERIGYWGEH---RYELQHEIDGVVVKVDDV 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ + 
Sbjct: 293 ALQRRLGATSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVG 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+V+  +V+ R    + F 
Sbjct: 353 LATLHN---------AAEVKRKG--VLIGDTVMIRKAGDVIPEVLGPVVDLRDGTEREFV 401

Query: 430 FPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            P+ CP C +     L P K G   A  RC    +C AQ  ER+ H   R A +IEGLG 
Sbjct: 402 MPTTCPECGT----PLAPAKEGD--ADIRCPNARSCPAQLRERVFHVAGRGALDIEGLGY 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +           A  I    D+F L       T       G    + T L  ++ K + +
Sbjct: 456 EAATALLT----AGVIADEGDLFALTEDDLLRTELFRTKAGTLSANGTRLLQNLQKAKKV 511

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L R + +L IRHVG   AR+LA  +        ++++I++ + +    L  V  VG  I
Sbjct: 512 ALWRVLVALSIRHVGPTAARALATEF-------GDLDSIMSASTE---RLAAVEGVGPTI 561

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A A+ E++    +   V+             + +V   +E   +V TG+L    R  A+E
Sbjct: 562 AAALTEWFTVDWHRAIVDKWRAAGVRMADERDASVPRTLEGLTVVVTGSLAGFSRDDAKE 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +   G   +  +S+KTD ++ GD+PGSK +KA +LGV I++E+ F  LL +
Sbjct: 622 AILARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPILDEDGFRKLLAE 673


>gi|240145659|ref|ZP_04744260.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82]
 gi|257202247|gb|EEV00532.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82]
          Length = 671

 Score =  333 bits (854), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 222/708 (31%), Positives = 374/708 (52%), Gaps = 57/708 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L  +I+YH D YY    P I D E+D L ++   +    P+L      + P   +
Sbjct: 5   EQIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTK---DSPTQHV 61

Query: 79  GGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG    +    V H++P LSL+ +++ E++  F+ ++    ++ DD    F +E KIDG 
Sbjct: 62  GGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMK---EQLDDPE--FVVEYKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
            + +RYE G    A  RGDG + GEDV+A  + I  + + L  + PE +E+RGEVY+   
Sbjct: 117 SMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLK-DKPEYLEIRGEVYMKNE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKG 253
           DF  +N++   +G+K +ANPRN A+G LR+L+      R L+ FV  + +    +I    
Sbjct: 176 DFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRGMDIMTHT 235

Query: 254 Q-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           Q YE L++    G P+    +   T   + +    +   R  L YDIDG V K++ +S +
Sbjct: 236 QGYEFLKRQ---GIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINRYSDR 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  ++ P+W I++K+  ++  T+LLDI++ +GRTG +TP A  EPV + G  ++ AT
Sbjct: 293 ELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSVSRAT 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFP 431
           LHN+D+I  L           D+ +GD ++V ++GE+IPKV + +  E+ PD  + F  P
Sbjct: 353 LHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKE-VRKEKRPDGWKRFMIP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C ++  R+      K  A  +CT    C AQ    + +FV RDA +I+G G   +
Sbjct: 401 DVCPVCGAKTERE------KDTADIKCTSP-NCPAQLERHIINFVGRDAMDIKGFGTVYI 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +       I+  ADIF L+  ++      + I+G  + +   L ++I K +     
Sbjct: 454 EELVR----LGYIKDIADIFELKDHREELIE--QGIIG-KEKNTDKLLETIEKAKENDAY 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             +   GI +VG   A+++ K + S          I+   + D  +L+ V  VG++ A  
Sbjct: 507 MLLTGFGIPNVGKAAAKTIMKRFPS----------ILDLEDADRDALMEVDDVGEVSADC 556

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I  F+ + +N   + A LK +  ++   E + + S +  K +V TGTL  + R +A E V
Sbjct: 557 IFRFFHDEKNKEMI-ARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAELV 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + G  VS  +S+KTD ++ G++ GSKL KAQ+LG+ ++ E +   LL
Sbjct: 616 EKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663


>gi|311740579|ref|ZP_07714406.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304099|gb|EFQ80175.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 689

 Score =  333 bits (854), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 221/721 (30%), Positives = 369/721 (51%), Gaps = 67/721 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E + L QE+  H + YY   +P I D+++DAL +R  A+    P+LA    P+ P  ++
Sbjct: 12  REWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLLALEEEHPELAV---PDSPTQQV 67

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G   +     + H    +SL+ +++  +++ ++ R           +  +  E KIDG  
Sbjct: 68  GAAPSAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKIDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYIS 194
           I + Y  G+   AA RGDG  GE+++A  R I  IP  L+      +PE+IE+RGEVY+ 
Sbjct: 118 IDLVYRNGRLTTAATRGDGTVGEEITANARVIEDIPHELTGTDEYPVPELIEIRGEVYMR 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
             DF  +N+E  A G+  +ANPRNAA+G LR  +P ++  R L    HGLG         
Sbjct: 178 PEDFEEINEERAADGKDKFANPRNAAAGGLRMKDPAEVKKRRLKMVCHGLGAREGFSPSS 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q++  + +   G PV+   +Q  +   +          R    +++DGLV KVD+ + Q+
Sbjct: 238 QHDAYKAIAAWGLPVSPYTKQVYSAKEVQDEVAHWAEHRHDAIFEMDGLVVKVDDLASQR 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A +EPV + G+ +  ATL
Sbjct: 298 ALGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPYAVMEPVFVSGSTVEMATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+  +K         R G  + +GD V++++AGE+IP+V+  +  +R      ++FP  
Sbjct: 358 HNQSEVK---------RKG--VLIGDTVIIRKAGEIIPEVLGPVREQRDGSEHEWTFPEN 406

Query: 434 CPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-KQQL 491
           CP C ++    L P K G   A  RC    +C AQ   RL++  SR A +IE LG K  +
Sbjct: 407 CPACGTK----LAPQKDGD--ADWRCPNTQSCPAQLSARLEYLASRKALDIEALGEKGAM 460

Query: 492 DF----FFKSEDPAFSIR----IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           D         E   F +     + +D++T ++  +   +K E      + +  NL  ++ 
Sbjct: 461 DLIDNGILVDESELFELTAEKLLASDVYTAKKDTKDKRSKKEGNAKV-NTAGQNLLSNLE 519

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + +     R + SL IRHVG   AR+LA  Y S       ++ + A   ++   L  V  
Sbjct: 520 EVKGRDFWRVLVSLSIRHVGPIAARALASRYGS-------MDRLRAAKTEE---LAEVDG 569

Query: 604 VGDIIAQAI-----VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           VG  IAQ+      V++++   +  A   +  EV+      E +    +E   +V TG+L
Sbjct: 570 VGMTIAQSFHDWFEVDWHRTIVDKWAAAGVAMEVAA-----EDHKEQTLEGLTIVVTGSL 624

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +   R  A+E +   G   +  +S+KT  ++ G N GSK +KA++L + I+NE QF  LL
Sbjct: 625 ENFTRDSAKEAIVSRGGKATGSVSKKTSYLVAGANAGSKEDKARELDIPILNESQFQQLL 684

Query: 719 Q 719
           +
Sbjct: 685 E 685


>gi|125623311|ref|YP_001031794.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|166215816|sp|A2RIF3|DNLJ_LACLM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|124492119|emb|CAL97048.1| DNA ligase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070060|gb|ADJ59460.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 686

 Score =  333 bits (854), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 235/747 (31%), Positives = 369/747 (49%), Gaps = 102/747 (13%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE   KEL+    + +Y    YY   +P + DSEYD L      +    P L R++ P
Sbjct: 1   MNIESKIKELTDQLNQFAYE---YYTLDEPSVEDSEYDHLYHELVKLEQENPQLVRADSP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
               ++ GG +     K  H     SL  +++ E+L  +  R+     +K+  +  +  E
Sbjct: 58  T---HRTGGVILDGFVKFRHPYNLYSLGDVFSREELALWEERV-----RKEIVNPEYICE 109

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRG 189
            KIDG  +++ YE G  V AA RGDG +GE+++  ++ I  +P    L + E I+  VRG
Sbjct: 110 LKIDGLSLSLYYENGLLVTAATRGDGTTGENITENVKRIKDVP----LKLKEAIDIVVRG 165

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ + +F  LN E    G  P+ANPRNAA+G LR+L+   +  R L  F++   + S 
Sbjct: 166 EAYLPRQNFAKLNAERELEGAAPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQ--EASP 223

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q E+L+    LGF VN   + A     I  +  E   +R  LPYDIDG+V KV+ 
Sbjct: 224 ATNDTQEEVLEYFEELGFQVNPERKFARNLDEIWEFIEEATRLRDELPYDIDGVVIKVNN 283

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q++LG   ++PRW I++KF  +QA T +L +D  +GRTG++TP A +  V +    +
Sbjct: 284 LAEQEELGFTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTAVLLAQTTV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP----- 423
             ATLHN DYI+            +DIR  D+V++ +AG++IPKV  +++ +R P     
Sbjct: 344 ARATLHNVDYIQE-----------KDIRNHDKVMIYKAGDIIPKVGKVLLEKRKPARHLR 392

Query: 424 ---------------------------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
                                      +      P+ CP C S ++   +        A 
Sbjct: 393 KTHRANKYVWTRFGRRSVEKGLVFSKREDNRVKIPTQCPECDSDLIHFEDE------VAL 446

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RC   L C AQ  E+L HF SRDA NI GLG   +   F   D      + AD++ L   
Sbjct: 447 RCVNPL-CPAQIREKLIHFASRDAMNIVGLGPSVISQLF---DKKLVTDV-ADLYQLTVE 501

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
              +  K++  L    VS      +I + R  S E+ +F LGIRHVG + A+ L + + +
Sbjct: 502 DLLTLDKVKETLAQKIVS------AIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFAN 555

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS- 635
            +  +Q     I+           +P +G +IA A+V +++        + LL E+  + 
Sbjct: 556 LRALSQASEEEISE----------IPSLGGVIATAVVSYFET----AGAKTLLDELENAG 601

Query: 636 -----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
                +G    NV   +  K +V TG L  ++R +A+E +  LGA VS  +S+KTD+++ 
Sbjct: 602 LNFAYLG--AVNVEGILSGKTVVLTGKLTTLKRTEAKEKLEALGANVSGSVSKKTDLVVA 659

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           G+  GSKL KAQ LG++I +E+  L L
Sbjct: 660 GEEAGSKLTKAQDLGIEIWSEQDLLDL 686


>gi|318040766|ref|ZP_07972722.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0101]
          Length = 690

 Score =  333 bits (854), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 222/722 (30%), Positives = 356/722 (49%), Gaps = 51/722 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P E+L+   AR   + L Q ++     YY    P + D  YD L R    +  A P+L  
Sbjct: 6   PDESLAAPHARA--AELRQLLNRAAHAYYVLDAPEMEDPVYDRLYRELLDLETAHPELIA 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++GG        V H I  LSL+  +N  +L  +  R+ +   ++   ++ 
Sbjct: 64  ---PDSPTQRVGGAPAEGFQSVQHRIGLLSLDNAFNTGELEAWYARLLKVLDREPAAALP 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186
              E KIDG  + + YE G  V AA RGDG  GE+++A +R I ++P  L L + PE +E
Sbjct: 121 MVGELKIDGNALALSYEHGVLVRAATRGDGEQGEEITANVRTIGSVPLRLQLEHPPEWLE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG- 244
           VRGE +I    F A+N E  + G   +ANPRNA +G LR+L+P  +  R L+FF + L  
Sbjct: 181 VRGEAFIPDGTFTAINAERESRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHL 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                    Q+E LQ ++  GF VN           + +++    + R  L Y  DG+V 
Sbjct: 241 PPGTQGPASQWESLQWLKAAGFKVNPNAELLPDLAAVEAFFERWDTGRRQLDYATDGVVV 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+++ +LQ   G   ++PRW I+ K+  ++A ++LL +  Q+GRTG++TPVA  EPV + 
Sbjct: 301 KLNDLALQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLACQVGRTGVVTPVAEFEPVPLA 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ ATLHN D +  L           D+  GD ++V++AGE+IP+VV ++   R   
Sbjct: 361 GTSVSRATLHNADRLVEL-----------DLHAGDTIVVRKAGEIIPEVVRVLAELRPAG 409

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           AQ    P  CP C S +VR+         AA RC    +C A     L+H+VS+ A +++
Sbjct: 410 AQRLELPHTCPECGSELVREEGE------AATRCVNS-SCPAILRGALRHWVSKGALDVD 462

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + ++      D      I AD++ L      S  ++      G  S  NL  ++  
Sbjct: 463 GLGSKLIEQLV---DRGLVGSI-ADLYRLDGALLASLERM------GSKSADNLVAALAA 512

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +     R ++ LGI HVG   A++LA  + S    A       A +  + ++ +    +
Sbjct: 513 SKAQPWNRQLYGLGIHHVGEVNAKTLASAFPSAAELA-----TAATDTPELITAVYG--I 565

Query: 605 GDIIAQAIVEFYQNPRN---ICAVEAL-----LKEVSPSIGRHEKNVSSEIENKKLVFTG 656
           G  IAQ++ +++    N   +  +E L       +   +        S+++  +  V TG
Sbjct: 566 GGEIAQSLQQWFATAANQELLSQLERLGFSLATSDEELAAAAERSAASAQLNGQTFVLTG 625

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R +A+  +   G  VS  +S+KT  ++ GD  GSKL KA+ LGV +++E     
Sbjct: 626 TLPSMSRSEAKALIEAAGGKVSGSVSKKTSYVVAGDEAGSKLSKAESLGVAVLDEAGLQA 685

Query: 717 LL 718
           LL
Sbjct: 686 LL 687


>gi|317177554|dbj|BAJ55343.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F16]
          Length = 656

 Score =  333 bits (853), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 237/701 (33%), Positives = 365/701 (52%), Gaps = 68/701 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P+   S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGAITPNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNSHLMRMWSLDDVFNQNELQAWLQRILKAYP-----STSFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAITYNGE--IEIRGEVIISKKDFDALNQERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHALIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPIEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A ++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMAHSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  + + ++  SS   NK +V TGTL K ++  AQ  +  LGA VS+ +
Sbjct: 557 IRSLFDLLNPKNSDMAKEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKVSSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|86153540|ref|ZP_01071744.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843266|gb|EAQ60477.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 647

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 221/689 (32%), Positives = 362/689 (52%), Gaps = 64/689 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYDAL R        F +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDALIREL----SVFEEQNKDEISKDSPTQKIAPIIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L ++W++ED+  F     R W K+      F +EPK DG  + + YE GK    A 
Sbjct: 74  ----LRRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLASGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++   E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  G+G+ +  F K   E++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           VR       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG   + P++M + KF 
Sbjct: 244 VRLCTNLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +    R       S P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+   +C   + C  + +  + HFVS+   NI+GLG+  ++  +K +           I 
Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+       +  E + GF +  + NL ++I + R   L RFI +LGI H+G   A+ L+
Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
                  +F +E       +   + +   +   G+ +A ++ EF +   N   ++   K 
Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTR--VNHTRIDEFYKL 559

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++  I + E      I  K  V TGTL +  R + +  + +LG  VS  +S+KTD ++ G
Sbjct: 560 LNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  GSKL KA++L VK ++E  F  L+++
Sbjct: 619 EEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|283955998|ref|ZP_06373487.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792474|gb|EFC31254.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 1336]
          Length = 647

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 225/689 (32%), Positives = 364/689 (52%), Gaps = 64/689 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYDAL R        F +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDALIREL----RVFEEQNKDEISKDSPTQKIAPIIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L+++W++ED+  F     R W K+      F +EPK DG  + + YE GK V  A 
Sbjct: 74  ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++   E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  G+G+ +  F K   E++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           VR       ++  Y+E+ ++R   P  +DG+V +VD+  L ++LG   + P++M + KF 
Sbjct: 244 VRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLELCEELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +    R         P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEILRPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+   +C   + C  + +  + HFVS+   NI+GLG+  ++  +K +           I 
Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+       +  E + GF +  + NL ++I + R   L RFI +LGI H+G   A+ L+
Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIDHIGEVAAKKLS 513

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
              LS+ N      +  A+ N        +   G+ +A ++ EF +   N   ++   K 
Sbjct: 514 ---LSF-NKEWHKQSFEAYAN--------LEGFGEQMALSLCEFTR--VNHTRIDEFYKL 559

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++  I + E    S I  K  V TGTL +  R + +  + +LG  VS  +S+KTD ++ G
Sbjct: 560 LNLKIEKLEIKSDSVIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  GSKL KA++L VK ++E  F  L+++
Sbjct: 619 EEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|282861257|ref|ZP_06270322.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
 gi|282563915|gb|EFB69452.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
          Length = 732

 Score =  333 bits (853), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 222/753 (29%), Positives = 369/753 (49%), Gaps = 75/753 (9%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           + R+L  + A    +AR+  + L ++I  H   YY   +P++ D+E+D L R  +A+   
Sbjct: 6   QARELTGVSA----EARERHALLSEQIEEHRFRYYVKDQPVVSDAEFDRLMRELEAVEDE 61

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
            P L     P+ P  K+ G        V H    LSL+  ++ E+L  +  R+ +   + 
Sbjct: 62  NPQL---RTPDSPTQKVAGPYTTEFTSVEHRERMLSLDNAFDDEELAAWAERVAKDVGRP 118

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN 180
                 F  E K+DG  + + YE G+   AA RGDG +GED++  IR I  IP R+    
Sbjct: 119 ---GYHFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNIRTIAEIPHRLTGDR 175

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF 239
           +P ++E+RGEVY     F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  
Sbjct: 176 VPALVEIRGEVYFPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMV 235

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           VHG+G    +      +    +R  G P     +  ++  G+  +       R ++ ++I
Sbjct: 236 VHGIGAREGLDIDRLSQAYDLLRDWGLPTARHNKVVDSLDGVREFVRYFGENRHSVEHEI 295

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V K+DE  LQ +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++E
Sbjct: 296 DGVVVKLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVE 355

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
            V + G+ +  ATLHN++ +K            + + +GD V++++AG+VIP+++  +V+
Sbjct: 356 AVEVAGSEVEFATLHNQNVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVD 404

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            R    + F  P+ CP C +     L P K G +    RC    +C AQ  ER+ +   R
Sbjct: 405 LRDGSEREFVMPAECPECGT----PLRPMKEGDV--DLRCPNARSCPAQLRERVAYLAGR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTL--------------------QRRQ 517
              +I+  G        +  +P+   +R   D+F+L                    +R  
Sbjct: 459 KCLDIDHFGYVAAAALTQPLEPSEPPLRDEGDLFSLTIDQLLPIRAYVLDPDSGLPRRDP 518

Query: 518 QTSTTKIENIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           +T   KI  +     G    +   L D I   +   L R +  L IRHVG   A  LA+ 
Sbjct: 519 KTGEEKIATVFANQQGEPKKNALALLDGIAAAKQAPLARILTGLSIRHVGPVAAVELARQ 578

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S     +     +A  +           VG IIA ++ +++    +      +L++  
Sbjct: 579 FRSVDRIDEASEAELAAADG----------VGSIIAASVKQWFAEDWH----REILRKWR 624

Query: 634 PSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
            +  R E   + E      +E   +V TGTL    R  A++ +  LGA V+  +S+KT  
Sbjct: 625 EAGVRMEDEGAGEDEGPRPLEGLTVVVTGTLASHTRDGAKDALQSLGAKVTGSVSKKTSF 684

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++VG+NPGSK +KA QL V +++E  F  LL +
Sbjct: 685 VVVGENPGSKYDKAMQLKVPVLDEAGFAVLLDE 717


>gi|227503896|ref|ZP_03933945.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940]
 gi|227199519|gb|EEI79567.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940]
          Length = 680

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 217/713 (30%), Positives = 357/713 (50%), Gaps = 61/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +++ S L QE+  H + YY   +P I D+++D L +R   +    P+LA    P+ P  +
Sbjct: 14  QRKWSELAQEVRKHRELYYN-GEPSIPDADFDELFQRLLKLEAEHPELAV---PDSPTQQ 69

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G         + H     SL+ ++N  +++ ++ R           +  +  E KIDG 
Sbjct: 70  VGAAPE-GAADIEHLERLYSLDNVFNESEMQDWLDRT---------PAQTYLTELKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193
            I + Y  GK   AA RGDG  GED++A  + I  IP  LS      +P ++EVRGEVY+
Sbjct: 120 SIDLVYRDGKLTTAATRGDGRVGEDITANAKVITDIPHELSGTDEYPVPALVEVRGEVYM 179

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
             ++F  +N      G+  +ANPRNAA+G LR  +P ++  R L+   HG+G        
Sbjct: 180 RPDEFAEINAARREDGKPTFANPRNAAAGGLRMKDPNEVKKRRLHMVCHGIGARDGFQPS 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q++  Q +   GFPV+   +Q  +   +          R    +++DGLV KVD+ + Q
Sbjct: 240 SQHDAYQALEAWGFPVSPYTKQVKSAAAVQKEIKHWAEHRHDAYFEMDGLVVKVDDLASQ 299

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  +R+PRW I++K+  ++ +T+LLDI++ +GRTG +TP A +EPV + G+ ++ AT
Sbjct: 300 RALGATSRAPRWAIAYKYPPEEVTTKLLDIEVGVGRTGRITPFAVMEPVFVSGSTVSKAT 359

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+  +K            + + +GD +++++AGE+IP+V+  ++  R      + FP 
Sbjct: 360 LHNQFEVK-----------NKGVMIGDTIIIRKAGEIIPEVLGPVLELRDDSVYEWVFPE 408

Query: 433 FCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            CP C ++    L P K G      RC    +C AQ   RL++  SR   +IE LG++  
Sbjct: 409 NCPSCGTK----LAPQKDGD--QDWRCPNTRSCPAQLSARLEYLASRKGMDIEALGEKAA 462

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               +S      +   AD+F L   +   ++      G  +     L  ++   R     
Sbjct: 463 VDLIES----GVLVDEADLFDLDEEKLLKSSAYTTKAGKLNAQGKKLLKNLESARQTDFW 518

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + SL IRHVG   AR+LA  Y S +       + +A  +           VG IIA +
Sbjct: 519 RVLVSLSIRHVGPIAARALATRYRSMEALRAASESELADTDG----------VGGIIAAS 568

Query: 612 IVEFYQNP--RNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
              +++    RNI    A   +  E + +  +HE+     +E   +V TGTL+   R  A
Sbjct: 569 FKAWFEEDWHRNIVEKWAAAGVTMEDT-ATEQHEQT----LEGLTIVVTGTLENFSRDSA 623

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   G   S  +S+KTD ++VG+N GSK  KA++LG+ I++E  F  LL+
Sbjct: 624 KEAIITRGGKASGSVSKKTDYVVVGENAGSKETKARELGLTILDEAGFQRLLE 676


>gi|317062114|ref|ZP_07926599.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
 gi|313687790|gb|EFS24625.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 665

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 233/701 (33%), Positives = 369/701 (52%), Gaps = 54/701 (7%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL---SLF 87
           ++  YY  ++ +I D EYD L      +   +P+      P      I G  NL      
Sbjct: 8   YNQYYYTNNESLISDVEYDMLMNELKELEEKYPEYKSEASPT----VIVGASNLRENKFQ 63

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           KVTH  P LSL   +N E++  FI RI R   +++D  I + LE K+DG  I+I+YEKGK
Sbjct: 64  KVTHKKPMLSLSNTYNEEEIGDFIDRIKRLLPERED--IKYALELKLDGLSISIQYEKGK 121

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V    RGDG  GEDV+  I  I TIP   +L  P  +E+RGE+ +  + F +LN+  + 
Sbjct: 122 LVRGVTRGDGAIGEDVTENIMEIETIPH--TLKEPLDMEIRGEIVLPISRFESLNERRME 179

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
            G + +ANPRNAASG LR+++ + I  R L+ + + +        +   E ++ +  LG 
Sbjct: 180 AGEEVFANPRNAASGTLRQIDASIIKERGLDCYFYFIVDAKNYGIQTHSESIKYLESLGI 239

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
                    +T   +    +  +  +  L Y+ DG+V KVD   L  +LG   +SPRW I
Sbjct: 240 KTTGVCEVLDTASALKKRIDYWEQEKEKLDYETDGMVIKVDNLDLWDELGNTTKSPRWAI 299

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++KF  KQ +T LL I  Q+GRTG +TPVA LE V + G+ +  A+LHN   I+      
Sbjct: 300 AYKFPAKQVTTTLLGITWQVGRTGKVTPVAELEEVALSGSKVKRASLHNFHEIE------ 353

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 +DIR+GD+V +++A E+IP+VV  I   R    +  + P  CP+C S V R+  
Sbjct: 354 -----RKDIRIGDKVFIEKAAEIIPQVVKSIKEFRDGSEKMITEPDKCPVCGSPVARE-- 406

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
              G++    +CT  + C  +   R+++FVSRDA NI G G + ++   K  + +F I+ 
Sbjct: 407 --EGQVDI--KCTNPV-CPGKVKGRIEYFVSRDAMNIGGFGSKMVE---KMLELSF-IKN 457

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
             DI+ L+  ++     +ENI   G  SV NL DSI   +     + I++LGI  +G   
Sbjct: 458 VGDIYDLKDHKED----LENIEKMGKRSVENLLDSIEASKKRDYSKVIYALGIPFIGKYS 513

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
            + LA+        ++ I+N++    ++   LI +  +GD  A+A+ +F ++  NI  + 
Sbjct: 514 GKLLAEA-------SRNIDNLMKMEIEE---LIEIDGIGDKGAKAVYDFLRDEENIELIN 563

Query: 627 ALLKEVSPSIGRHEKNVSSEIE----NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            +LK         EK    + E     K  +FTGTL+  +R + +E + +LG    + +S
Sbjct: 564 -ILKGHGLQFAMEEKEEEDQSEKIFSGKTFLFTGTLKNFKREEIKEEIEKLGGKNLSAVS 622

Query: 683 RKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYN 722
           +  D +I+G+  GSKL+KAQ+LG VKI+ EE+F+ + +  N
Sbjct: 623 KNLDYLIIGEKAGSKLKKAQELGTVKILTEEEFVEICKNNN 663


>gi|320008426|gb|ADW03276.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331]
          Length = 731

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 222/747 (29%), Positives = 364/747 (48%), Gaps = 75/747 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+  + L ++I  H   YY   +P++ D+E+D   R  +AI H  P+L     P+ P 
Sbjct: 16  EVRERHALLAEQIEEHRFRYYVKDQPVVDDAEFDRQMRALEAIEHEHPEL---RTPDSPT 72

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G        V H    LSL+  ++  +L  +  R+ +           F  E K+D
Sbjct: 73  QKVAGPYTTEFTSVEHRERLLSLDNAFDDGELAAWAERVAK---DVGGGGYHFLCELKVD 129

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G+   AA RGDG +GED++  +R I  IP R+   +IP ++E+RGEV+  
Sbjct: 130 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPLRLKGDDIPALVEIRGEVFFP 189

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
              F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G         
Sbjct: 190 MEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGFGIDR 249

Query: 254 QYEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +    +R  G P    N  V   +     ++++ E    R ++ ++IDG+V K+DE  
Sbjct: 250 LSQAYDLLREWGLPTARHNKVVESLDEVREFIAWFGEN---RQSVEHEIDGVVVKLDEIP 306

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  
Sbjct: 307 LQGRLGSTSRAPRWAIAWKYAPQEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEF 366

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN++ +K            + + +GD V++++AG+VIP+++  +V+ R      F  
Sbjct: 367 ATLHNQNVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEHAFVM 415

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG--- 487
           PS CP C +  +R +      L    RC    +C AQ  ER+ +   R   +I+  G   
Sbjct: 416 PSECPECGT-PLRPMKEADIDL----RCPNARSCPAQLRERVAYLAGRKCLDIDHFGYVA 470

Query: 488 ---------------KQQLDFFFKSEDPAFSIR---IPADIFTLQRRQQTSTTKIENIL- 528
                            + D F  + +    IR   +  D    +R  +T   KI  +  
Sbjct: 471 AAALTRPLEPEEPPLLDEGDLFGLTVEQLLPIRAYFLDPDSGLPKRDPKTGEEKIATVFA 530

Query: 529 ---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
              G    +   + + I   R   L R +  L IRHVG   A  LA+ + S +   +   
Sbjct: 531 NQQGEPKKNALGMLEGIAAARQAPLARILTGLSIRHVGPVAAVELARQFRSIERIDEASE 590

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
             +A  +           VG IIA ++ +++    +      +L++   +  R E   + 
Sbjct: 591 EELAAADG----------VGPIIAASVKQWFAEDWH----REILRKWREAGVRMEDEGAG 636

Query: 646 E------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           E      +E   +V TGTL    R  A++ +  LGA V+  +S+KT  ++VGDNPGSK +
Sbjct: 637 EDEGPRPLEGLTVVVTGTLAAHTRDGAKDALQSLGAKVTGSVSKKTSFVVVGDNPGSKYD 696

Query: 700 KAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           KA QL V +++EE F  LL+Q     R
Sbjct: 697 KAMQLKVPVLDEEGFAVLLEQGPDAAR 723


>gi|213964541|ref|ZP_03392741.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46]
 gi|213952734|gb|EEB64116.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46]
          Length = 703

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 222/717 (30%), Positives = 372/717 (51%), Gaps = 65/717 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++   L   I  +   YY  ++P+I D+EYD + R+   +   +PDL     P+ P  +
Sbjct: 33  REKWQELATRIRDNAALYYT-AQPVISDAEYDEMFRQLQQLEEQWPDLVV---PDSPTQQ 88

Query: 78  IGGEMNL----SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           +G ++       +F+     P   LE++++++++  F  +  R W  +   S + T E K
Sbjct: 89  VGAQVEAPADGEVFE-----PVEHLERLYSLDNV--FDEQELRGWLARTPASTYLT-ELK 140

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192
           IDG  I + YEKG+ V AA RGDG  GE+V+A  R I  IP  +S  N+P+++EVRGEV+
Sbjct: 141 IDGLSIDLVYEKGRLVRAATRGDGRVGENVTANARTIEDIPHEISGENVPDVLEVRGEVF 200

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           IS  +F  +N + +  G+KP+ANPRNAA+G LR+ +  ++  R L+   HG+G       
Sbjct: 201 ISLEEFERINSDRVDAGQKPFANPRNAAAGSLRQKDVAEVAKRRLSMICHGIGHIEGWRP 260

Query: 252 KGQYEMLQKMRCLGF---PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + Q+E  + +   GF   P  N V  A+     + Y+ E    R    +++DGLV KVD 
Sbjct: 261 QSQHEAYRALGEWGFHVSPYTNQVHSADDVVKQMQYWGEH---RHDAIHEMDGLVVKVDS 317

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            S Q+ LG  +R+PRW I++K+  ++ +T LLDI + IGRTG  TP A ++PV + G+ +
Sbjct: 318 LSEQRALGATSRAPRWAIAYKYPPEEVTTDLLDIRVSIGRTGRATPYAVMKPVFVAGSTV 377

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN           +V R G  + +GDRV +++AG+VIP+V+  + + R    + +
Sbjct: 378 EMATLHN---------PSEVHRKG--VLIGDRVTIRKAGDVIPEVLGPVADLRDGSERKY 426

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P+ CP C +R+    +       A  RC     C  Q   R++   SR  F+IE LG+
Sbjct: 427 IYPTLCPECGTRLAPAKDSD-----ADWRCPNTRYCPGQLRRRIEFLASRSGFDIENLGE 481

Query: 489 Q-QLDFFFKS--EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +   D   +   +D +    +  +         T++ K  N  G        L  +I+  
Sbjct: 482 RGAADLIHRGVLDDESRLFDLTEEDLLGTEVYTTASRKSLNANG------KKLLANIDAA 535

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++  L R + SL IRHVG  +AR+LA+ + S +         I+           +  +G
Sbjct: 536 KDKELWRVLVSLSIRHVGPTVARTLAQKFGSMEALRAASREEISA----------IDGIG 585

Query: 606 DIIAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           +II  ++ ++++   +   V   EA    ++  +      V   +E   +V TG+L+   
Sbjct: 586 EIIGDSVADWFEVDWHREVVERWEAAGVRMADEVTDRPDQV---LEGLTVVVTGSLEDFT 642

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R  A+E +   G   +  +S+KTD ++VG+N GSK  KA++LG+ I++E+ F  LL+
Sbjct: 643 RDSAKEAIISRGGKAAGSVSKKTDYVVVGENAGSKATKAEELGLPILDEDGFKRLLE 699


>gi|237753058|ref|ZP_04583538.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375325|gb|EEO25416.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 666

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 230/703 (32%), Positives = 358/703 (50%), Gaps = 75/703 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    PI  D EYD L  +  A     P     + P     ++G ++     K TH   
Sbjct: 20  YYVLDDPIASDEEYDLLYHKVLAYEAQNPQFIAQDSPT---QRVGDKVLEGFNKHTHLKR 76

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SLE ++N  + +++I R  R      D  + F++ PK DG  + + YE G    AA R
Sbjct: 77  MWSLEDVFNETETQEWILRAKRGLGLLSDAPLIFSVSPKFDGASLNLLYEDGILKCAATR 136

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GD   GE+V+   R IP+IP  LS+     IE+RGE  I K+DF ALN E    G   +A
Sbjct: 137 GDAFIGENVTQNARTIPSIP--LSIAYKGRIEIRGECVIGKDDFEALNLERQNKGETLFA 194

Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI----FAKGQ--------YEMLQKM 261
           NPRN A+G LR+L+     +R L F   G+G+        FA  +        + +++ +
Sbjct: 195 NPRNCAAGSLRQLDSKITASRKLQFIPWGVGECDTKDFMDFASKEKTRNPNSFFALMEGI 254

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LGF           +  I + Y  +   R      +DG+V  VD F LQ++LG   ++
Sbjct: 255 YALGFQKPPFTELCTNYDSIHTAYQTLLKAREDYAIMLDGMVLCVDAFDLQEKLGFTIKA 314

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PR+  ++KF   +   ++L I +Q+GRTG++TPVA LEPV + GA I+ ATLHN D I  
Sbjct: 315 PRFACAYKFPALEKRAKILSITLQVGRTGVITPVAELEPVLLEGAKISRATLHNFDEIH- 373

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DI++ D V++ R+G+VIPK++  +   R     P + P+ CPIC S +
Sbjct: 374 ----------KKDIQINDFVVLIRSGDVIPKIIKSLPKLRDGTQYPCATPTQCPICNSTL 423

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           + +      KL+        L C A+    + HF S+ A NI+GLG++ ++  F+ +   
Sbjct: 424 LIE-----EKLIKCQN----LNCPARVKNSITHFASKKALNIDGLGEKIVELLFECK--- 471

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I+   DIFTL+         +E + GF +  + NL ++I K + + L RFI +LGI H
Sbjct: 472 -KIQSIEDIFTLK------ANDLEGLEGFKEKKINNLIEAILKVKGVELWRFINALGIEH 524

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   ++ LA  Y   + + +   + IA +             G  +A+++VEF      
Sbjct: 525 IGEGASKKLANAY-GLEFYKKSYADFIALDG-----------FGGEMAESLVEF------ 566

Query: 622 ICAVEA-----LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            C V       LL+ ++P+   + + + S+I  K  V TGTL K +R + QE +  LGA 
Sbjct: 567 -CTVNQTRLLRLLEYIAPTC--NTQVLESKISGKTFVITGTLPK-KREEYQELLESLGAK 622

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KTD ++ G++ GSKL KA++LGVKI+N E+   LL+
Sbjct: 623 VSGSVSKKTDFLLCGEDAGSKLTKAKELGVKIINVEELQALLE 665


>gi|256832938|ref|YP_003161665.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603]
 gi|256686469|gb|ACV09362.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603]
          Length = 798

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 230/770 (29%), Positives = 383/770 (49%), Gaps = 106/770 (13%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S+++  + L+ L Q   +    YY   +  + D++YDAL     A+            P
Sbjct: 51  VSLQEQWERLARLIQRYQFE---YYIQGESSVPDADYDALLAELVAVEEQL-----GGAP 102

Query: 72  NG-PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            G P  ++GG  +    +V H  P LSL+  +++E+L+ +  R++    +    ++ +  
Sbjct: 103 QGSPTQRVGGTFSTEFEEVDHRQPMLSLDNAFSLEELQAWADRVH---GELSGGAVSYLC 159

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEV 187
           E KIDG  +++ YE+G+ V A  RGDG +GEDV+  ++ I +IP+ L  +    P+++E+
Sbjct: 160 EVKIDGLAVSLTYERGELVRALTRGDGQTGEDVTLNVQTIRSIPQRLGGDPAFHPQVVEI 219

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK- 245
           RGEV++   DF  LND     G K +ANPRNAA+G LR+ +P     R L+ + HG+G  
Sbjct: 220 RGEVFMKVADFADLNDSQARQGGKTFANPRNAAAGSLRQKDPRVTAQRRLSMYAHGIGAL 279

Query: 246 ----TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYD 298
                S +    Q ++    +  G PV++     +    +   + YY E    R ++ ++
Sbjct: 280 EWDGQSPVDLARQSDVYALYQQWGIPVSSHNSVEHDLDAVTRKIEYYREN---RHSIEHE 336

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           +DG V KVDE + QKQLG  +R+PRW I+ K+  ++ +TRLLDI + +GRTG +TP   +
Sbjct: 337 LDGFVIKVDEVAAQKQLGSTSRAPRWAIAFKYPPEEVTTRLLDIQVNVGRTGRVTPFGMM 396

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ ++ ATLHN   ++            +D+R GD V+V++AG+VIP+++  + 
Sbjct: 397 EPVLVAGSTVSMATLHNFHEVR-----------RKDVRPGDTVIVRKAGDVIPEILGAVE 445

Query: 419 NERHPDAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + R PD  P +  P+ CP C +  +R+       L    RC    +C +Q  ER+    S
Sbjct: 446 SLR-PDGLPQWEPPTHCPSCGTE-IREAKEGDKDL----RCPNAQSCPSQLRERVFALAS 499

Query: 478 RDAFNIEGLGKQ-------------------QLD--------------FFFKSEDPAFSI 504
           R AF+IE LG +                   QLD              F    E+ + + 
Sbjct: 500 RGAFDIEALGWESAVALCDPESSRPVGPDAPQLDGPPLTPVLTSEAHIFDLADENSSLT- 558

Query: 505 RIPADIFTLQRRQQTSTTKIENILGF-----------GDVSVTNLYDSINKRRNISLERF 553
           R   D+   + R+  S T+ E +  F              +   L++ + K ++  L R 
Sbjct: 559 RSLKDVVVWRERKLKSGTRWELVPYFYTRATASKSSVPTATTVKLFEEVQKAKSQPLWRV 618

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           + +L IRHVG   AR+LA  + S     A  ++ + A +            VG  IA+++
Sbjct: 619 LVALSIRHVGPTAARALATEFGSMDRIRAASVSELAAVDG-----------VGSTIAESV 667

Query: 613 VEFYQ----NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           VE+++    N      V A  K         +++V   +E   +V TG L+   R   +E
Sbjct: 668 VEWFREVDGNQWRPAIVAAWAKAGVSMEDIPDESVQRTLEGITVVVTGGLENFTRDGVKE 727

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +   G   S  +S+KTD ++VG N GSK  KA++LG++I+NEE+F  LL
Sbjct: 728 AIVARGGKASGSVSKKTDFVVVGANAGSKETKARELGLRILNEEEFTRLL 777


>gi|57238218|ref|YP_178701.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni RM1221]
 gi|81353856|sp|Q5HVI4|DNLJ_CAMJR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57167022|gb|AAW35801.1| DNA ligase, NAD-dependent [Campylobacter jejuni RM1221]
 gi|315058000|gb|ADT72329.1| DNA ligase [Campylobacter jejuni subsp. jejuni S3]
          Length = 647

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 223/695 (32%), Positives = 360/695 (51%), Gaps = 76/695 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYDAL R        F +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDALIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L+++W++ED+  F     R W K+      F +EPK DG  + + YE GK V  A 
Sbjct: 74  ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++   E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  G+G+ +  F K   E++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           VR       ++  Y+E+  +R   P  +DG+V +VD+ +L ++LG   + P++M + KF 
Sbjct: 244 VRLCANLDEVLKAYDELLVLREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G +TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGAITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +    R       S P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+   +C   + C  + +  + HFVS+   NI+GLG+  ++  +K +           I 
Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+          E + GF +  + NL ++I + R   L RFI +LGI H+G   A+ L+
Sbjct: 454 TLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513

Query: 572 ------KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
                  Y  S++ +A                   +   G+ +A ++ EF +   N   +
Sbjct: 514 LSFGKEWYKQSFEAYAN------------------LEGFGEQMALSLCEFTR--VNHTRI 553

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +   K ++  I + E      I  K  V TGTL +  R + +  + +LG  VS  +S+KT
Sbjct: 554 DEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKT 612

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           D ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 613 DYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|86151833|ref|ZP_01070047.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841462|gb|EAQ58710.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 647

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 363/689 (52%), Gaps = 64/689 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYD L R        F +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDVLIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L+++W++ED+  F     R W K+      F +EPK DG  + + YE GK V  A 
Sbjct: 74  ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++   E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  G+G+ +  F K   +++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSDVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           ++       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG   + P++M + KF 
Sbjct: 244 IKLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +    R       S P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+   +C   + C  + +  + HFVS+   NI+GLG+  ++  +K +           I 
Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+       +  E + GF +  + NL ++I + R   L RFI +LGI H+G   A+ L+
Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
                  +F +E       +   + +   +   G+ +A ++ EF +  R    ++   K 
Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTRVNRT--RIDEFYKL 559

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++  I + E      I  K  V TGTL +  R + +  + +LG  VS  +S+KTD ++ G
Sbjct: 560 LNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  GSKL KA++L VK ++E  F  L+++
Sbjct: 619 EEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|153956079|ref|YP_001396844.1| LigA1 [Clostridium kluyveri DSM 555]
 gi|219856414|ref|YP_002473536.1| hypothetical protein CKR_3071 [Clostridium kluyveri NBRC 12016]
 gi|190359246|sp|A5N2X7|DNLJ_CLOK5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781297|sp|B9DWM9|DNLJ_CLOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146348937|gb|EDK35473.1| LigA1 [Clostridium kluyveri DSM 555]
 gi|219570138|dbj|BAH08122.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 663

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 212/699 (30%), Positives = 359/699 (51%), Gaps = 46/699 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L + I YH+D YY    P I D EYD L      + ++ P+       + P  K
Sbjct: 4   KKRIDELRKIIEYHNDKYYNQDDPEITDYEYDKLYVELRNLENSHPEYKIQ---SSPTQK 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +   L KV H IP +SL+ +++ E++  F+ +I       +     F +E KIDG 
Sbjct: 61  VGGTVKRELRKVKHDIPVVSLQDVFSKEEVYSFVEKI-----TSEVTYPKFVVEKKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + +RY  G+   A  RGDG  GE V   I  + +IP+ +   +   +E+RGE+Y++  +
Sbjct: 116 TVVLRYYNGELKEAITRGDGSIGESVFENILQVKSIPKHIPSKL-NYLEIRGEIYMTNEN 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F+ +N++   +G K + NPRN A+G +R+L+ + +  R L+ F+  L  +     +   E
Sbjct: 175 FIKVNEKQEEIGGKIFKNPRNLAAGTIRQLDTSIVKDRNLDIFIFNLEISEGKKFETHSE 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +   GF V+   +   T   + +   +++  R  L Y IDG V KVD  + +  LG
Sbjct: 235 TLEWLSNQGFDVSPNFKICETADEVWNAILDIEESRWDLGYSIDGAVVKVDNLNDRISLG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++ P+W ++ K+  +Q  T + DI +Q+ RTG L P+A L PV +    I+ ATLHN+
Sbjct: 295 MTSKVPKWTVAFKYPPEQKETVIEDIIVQVSRTGRLNPLALLRPVILANTTISKATLHNQ 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++++AG++IP+++  I  +R   A+ +  P  CP+
Sbjct: 355 DFI-----------DSKDIRIGDTVIIQKAGDIIPEIIRSIPEKRPDWAKKYIIPDVCPV 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S+ +R+ +          RC+    C AQ   ++ +FVS+DA NI G G+  ++   K
Sbjct: 404 CNSKTIREPDG------VDTRCSNP-DCEAQSFRKIGYFVSKDAMNIVGFGQNTVEALMK 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  +DI+ L+  +     K   I+G  + SV NL ++I   ++  ++R I  
Sbjct: 457 DG----YIKKISDIYILKNYKDALIEK--GIIG-KEKSVNNLLNAIELSKDNDIDRLITG 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG + A+ LA  + S    A             +  LI +   G      I+EF+
Sbjct: 510 LGIRNVGKQSAKILAGNFKSMDELAGAA----------YEQLIELEDFGPTTVPDILEFF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            +   I  ++ L +    +I +  +K + +    K  V TGTL  ++R +A E +   G 
Sbjct: 560 NSNAYIELIKKLKEAGVNTISKTLQKKIDNRFLGKTFVITGTLPTMKRDEAAEIIQSFGG 619

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            VS  +S++T  ++ G+  GSKL KAQQLG+ I+ EE  
Sbjct: 620 KVSGSVSKRTSFVLAGEEAGSKLTKAQQLGISIITEEDL 658


>gi|217033559|ref|ZP_03438988.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10]
 gi|216944084|gb|EEC23515.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10]
          Length = 656

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 235/701 (33%), Positives = 368/701 (52%), Gaps = 68/701 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P+  ++   N P  K+G   + S  
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNGIQA---NSPTQKVGAITSNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNSHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  + + ++  SS   +K +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDMAKEKQENSSAFSHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|15645240|ref|NP_207410.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 26695]
 gi|3182983|sp|O25336|DNLJ_HELPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2313737|gb|AAD07680.1| DNA ligase (lig) [Helicobacter pylori 26695]
          Length = 656

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 235/699 (33%), Positives = 363/699 (51%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY   +PI+ D+ YD L +   A     P+  ++   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDEPIVSDAIYDELYQELKAYEEKNPNGIQA---NSPTQKVGATTTNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNQERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+I  ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMINRATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLSDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  +   ++  SS   NK +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFELLNPKNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +I G+NPGSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 616 SAKTDFLIAGENPGSKLALAQKHGVSVLNEEELLKRLKE 654


>gi|121612203|ref|YP_001000287.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005239|ref|ZP_02270997.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166215572|sp|A1VYU6|DNLJ_CAMJJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|87250057|gb|EAQ73015.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 647

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 365/689 (52%), Gaps = 64/689 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYD L R        F +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDVLIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L+++W++ED+  F     R W K+      F +EPK DG  + + YE GK V  A 
Sbjct: 74  ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++   E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  G+G+ +  F K   E++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           ++       ++  Y+E+ ++R   P  +DG+V ++D+ +L ++LG   + P++M + KF 
Sbjct: 244 IKLCANLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +  + R       S P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+   +C   + C  + +  + HFVS+   NI+GLG+  ++  +K +           I 
Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+       +  E + GF +  + NL ++I + R   L RFI +LGI H+G   A+ L+
Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
                  +F +E       +   + +   +   G+ +A ++ EF +   N   ++   K 
Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTR--VNHVRIDEFYKL 559

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++  I + E      I  K  V TGTL +  R + +  + +LG  VS+ +S+KTD ++ G
Sbjct: 560 LNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSSSVSKKTDYVLFG 618

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  GSKL KA++L VK ++E  F  L+++
Sbjct: 619 EEAGSKLIKAKELEVKCIDESAFNELVKE 647


>gi|238926785|ref|ZP_04658545.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531]
 gi|238885317|gb|EEQ48955.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531]
          Length = 677

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 224/712 (31%), Positives = 363/712 (50%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I++ + ELS L ++I  +   YY  ++  I D ++D L  R   +  A+P+L      N 
Sbjct: 4   IDEVKTELSELRRKIRKYSKQYYDDNESEISDYDFDMLMMRLKKLEAAYPELITK---NS 60

Query: 74  PLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P   +GG     +   V H +P LSL+ +++ E++R F+  I   +   +     F +E 
Sbjct: 61  PTRTVGGSAQREVGVLVPHDVPMLSLQDVFSEEEIRAFVDNILAHFPAAE-----FIVEE 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           KIDG  + +RYE G    A  RGDG   GEDV+A  R I  + + L   +P   EVRGEV
Sbjct: 116 KIDGLSLALRYENGVLARAITRGDGIVQGEDVTANARMIDDVVQELHDALP-YFEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ +  F  +N+    +G KP+ANPRN A+G LR+L+ + IT  R L+ FV  L ++   
Sbjct: 175 YMKRAAFAEVNERQELLGLKPFANPRNCAAGTLRQLD-SRITKERRLSMFVFNLQRSDGR 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E    M+  G       R       +     E+   R +LPYDIDG V KV+ F
Sbjct: 234 MFSSHTEAYAFMQAQGIKTIANYRVCRMAEEVWDAIEEIGVRRGSLPYDIDGAVVKVNSF 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +++++LG  A++PRW I++K+  ++  T L DI++ +GRTG +TP A  +PV + G  + 
Sbjct: 294 AMREELGVTAKAPRWAIAYKYPPEEKETVLRDIELSVGRTGRITPTAVFDPVGLCGTRVE 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+DYI  L           DIR+GD +LV ++GE+IP+V  ++  +R  +++P+ 
Sbjct: 354 RATLHNQDYIDSL-----------DIRIGDTILVYKSGEIIPRVKAVLKEKRPQNSRPYV 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C +  VR+ +       A  RC   + C AQ    L +FVSR A +I+GLG  
Sbjct: 403 IPDVCPVCGAHAVREAD------TADMRCQNPV-CPAQIENHLLNFVSRSAMDIKGLGAA 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +     +E     I   ADIF+L   ++        ++G    SV     +I   +   
Sbjct: 456 AVIALVHAE----YIHDIADIFSLHMHREELIAS--GLIGRAK-SVDQRLAAIEASKQNP 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER +  LGI  +G   A +L + + S       I+ +     +    ++ VP +G+I A
Sbjct: 509 PERLLTGLGIAGIGRAAAAALMQEFSS-------IDALQEAARESPERILAVPDMGEITA 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSI-GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           Q + EF+ +  + CA+   L+    +  G   + V + +  K  V TGTL  + R +   
Sbjct: 562 QKLTEFFSSA-SACALLDRLRAAGVNFAGTRTERVGAALAGKSFVITGTLPTLSREECSA 620

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T  G +V   +S+KTD ++ G+  G KL+KA+ L + I++E     ++ +
Sbjct: 621 LITAHGGLVKGSVSKKTDYLVAGEAAGRKLKKAEDLSIPILDEAALRAMISE 672


>gi|304436815|ref|ZP_07396781.1| NAD-dependent DNA ligase LigA [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370187|gb|EFM23846.1| NAD-dependent DNA ligase LigA [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 677

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 222/712 (31%), Positives = 365/712 (51%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I++ + ELS L ++I  +   YY  ++  I D ++D L  R   +  A+P+L      N 
Sbjct: 4   IDEVKTELSELRRKIRKYSKQYYDDNESEISDYDFDMLMMRLKKLEAAYPELITK---NS 60

Query: 74  PLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P   +GG     +   V H +P LSL+ +++ E++  F+  +   +   +     F +E 
Sbjct: 61  PTRTVGGSAQREVGLLVPHDVPMLSLQDVFSEEEIHAFVDNVLAHFPAAE-----FVVEE 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           KIDG  + +RYE G    A  RGDG   GEDV+A  R I  + + L   +P   EVRGEV
Sbjct: 116 KIDGLSLALRYENGVLARAITRGDGIVQGEDVTANARVIDDVVQKLHDALP-YFEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y+ +  F  +N+    +G KP+ANPRN A+G LR+L+ + IT  R L+ FV  L ++   
Sbjct: 175 YMKRAAFAEVNERQELLGLKPFANPRNCAAGTLRQLD-SRITKERRLSMFVFNLQRSDGR 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E    M+  G       R   T   + +   E+   R +LPYDIDG V KV+ F
Sbjct: 234 VFSSHTEAYVFMQSQGIKTIANYRVCRTAEEVWAAIEEIGVRRGSLPYDIDGAVVKVNSF 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +++++LG  A++PRW I++K+  ++  T L DI++ +GRTG +TP A  +PV + G  + 
Sbjct: 294 AMREELGVTAKAPRWAIAYKYPPEEKETVLRDIELSVGRTGRITPTAVFDPVGLCGTRVE 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+DYI  L           DIR+GD +LV ++GE+IP+V  ++ ++R  +++P+ 
Sbjct: 354 RATLHNQDYIDSL-----------DIRIGDTILVYKSGEIIPRVKAVLKDKRPQNSRPYV 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C +  VR+ +       A  RC   + C AQ    L +FVSR A +I+GLG  
Sbjct: 403 IPDVCPVCGAHAVREAD------TADMRCQNPV-CPAQIENHLLNFVSRSAMDIKGLGAA 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +         A  I   A+IF+L   ++        ++G    SV     +I   +   
Sbjct: 456 AVIALVH----AGYIHDVAEIFSLHEHREELVAS--GLIGRAK-SVDQRLAAIEASKQNP 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER +  LGI  +G   A +L + + S       I+ +     +    ++ VP +G+I  
Sbjct: 509 PERLLTGLGIAGIGRAAAAALMQEFSS-------IDALQEAARESPERILAVPDMGEITV 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSI-GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           Q + EF+ +  + CA+   L+    +  G   + V + +  K  V TGTL  + R +   
Sbjct: 562 QKLTEFFSSA-SACALLDRLRAAGVNFAGTRTERVGTALAGKSFVITGTLPTLSREECSA 620

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T  G +V   +S+KTD ++ G+  GSKL+KA+ LG+ +++E     ++ +
Sbjct: 621 LITAHGGLVKGSVSKKTDYLVAGEAAGSKLKKAEDLGIPVLDEAALRAMISE 672


>gi|213865477|ref|ZP_03387596.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 423

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 179/448 (39%), Positives = 276/448 (61%), Gaps = 32/448 (7%)

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           E K+DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRG
Sbjct: 1   ELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRG 60

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KT 246
           EV++ +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  + 
Sbjct: 61  EVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEG 120

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E+       +LQ  +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 121 GELPDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 179

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 180 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 239

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 240 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 288

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R      G+  A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 289 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRWAMDVDGM 342

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L      +  K+  +   G  S  N+ +++ K +
Sbjct: 343 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 392

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYY 574
             +  RF+++LGIR VG   A  LA Y+
Sbjct: 393 ATTFARFLYALGIREVGEATAAGLAAYF 420


>gi|237743296|ref|ZP_04573777.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1]
 gi|229433075|gb|EEO43287.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1]
          Length = 696

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 221/706 (31%), Positives = 378/706 (53%), Gaps = 50/706 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L ++++ + D YY  +K +I D E+D L +  +++   +P   + ++ + P   +G  + 
Sbjct: 34  LREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYP---QYKEISSPTTSVGASLK 90

Query: 84  LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
            + FK V H  P LSL   +NI ++  FI RI +   K+ +  + + LE K+DG  I++ 
Sbjct: 91  ENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISKEQE--LKYCLEVKLDGLSISLT 148

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    F  LN
Sbjct: 149 YRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAID--MEIRGEVVLPLASFEKLN 206

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           +E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E ++ +
Sbjct: 207 NERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADKLGFKSHSESIKFL 266

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G  +++
Sbjct: 267 ESMGIKTTGIFELLETSKEIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIGFTSKT 326

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  A+LHN   I+ 
Sbjct: 327 PRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNISEIQ- 385

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GDRV +++A E+IP++V  I  +R  + +    P  CP+C  ++
Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQIVKSIKEDRTGNEKIIEEPVNCPVCNHKL 435

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+      + +   +C     C A+    +++FVSRDA NI GLG + ++ F    D  
Sbjct: 436 ERE------EGLVDIKCVNE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
           + I+   DI+ L+  ++     +ENI   G  S+ NL +SI + +N   ++ I++LGI  
Sbjct: 486 Y-IKTVVDIYDLKNHREA----LENIDKMGKRSIENLLNSIEESKNRDYDKVIYALGIAE 540

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   ++ LAK        ++ I+ ++    ++   L  +  +G+I A  I+ F+   +N
Sbjct: 541 IGKVTSKILAKA-------SKNIDKLMTMTFEE---LTSIDGIGEIAANEIIAFFAKEKN 590

Query: 622 ICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              ++ L    LK        + +N++     K  +FTGTL+   R + +E + +LG   
Sbjct: 591 QKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKN 650

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
            + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 651 LSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|315586702|gb|ADU41083.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 35A]
          Length = 656

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 236/701 (33%), Positives = 365/701 (52%), Gaps = 68/701 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P+   S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGAITTNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----STSFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP V++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHVIAYNGE--IEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                ++NPRNAASG LR+L+ + IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFSNPRNAASGSLRQLD-SKITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIQHLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  + + ++  SS   +K +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|258651684|ref|YP_003200840.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233]
 gi|258554909|gb|ACV77851.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233]
          Length = 736

 Score =  330 bits (847), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 220/699 (31%), Positives = 353/699 (50%), Gaps = 57/699 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D E+D + R  D +   +P L     P+ P  ++GG        V H+  
Sbjct: 41  YYVLDAPTMSDGEFDTVLRELDGLEEQYPSL---RTPDSPTQRVGGGFATEFGAVEHAER 97

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ +++ ++L  ++ R  R         + +  E KIDG  + + YE+G+ + AA R
Sbjct: 98  LLSLDNVFSADELAGWLARTAR----DAGTPVSWLTELKIDGLAVNLTYERGRLIRAATR 153

Query: 155 GDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
           GDG  GEDV+  +R I  +P  L    + ++PE +E+RGEV+     F  LN  ++A G+
Sbjct: 154 GDGRVGEDVTLNVRTIAAVPERLRDDGAHDVPEFVEIRGEVFFPLEAFEELNASLVAAGK 213

Query: 211 KPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV- 268
            P+ANPRN+A+G LR+ +P    +R L    HG+G         Q +   ++R  G P+ 
Sbjct: 214 APFANPRNSAAGSLRQKDPRVTASRRLTMLCHGIGARVGFDITRQSQAYDRLRSWGLPIS 273

Query: 269 --NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
             N  V+        ++Y+ E    R  L +DIDGLV KVDE ++Q++LG  +R+PRW I
Sbjct: 274 DHNQVVQTEQEVADRIAYWAEH---RHDLSHDIDGLVVKVDEVAVQRRLGSTSRAPRWAI 330

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K+  ++A+T L DI + +GRTG +TP A LEPV I G+ +  ATLHN+D ++      
Sbjct: 331 AYKYPPEEATTLLRDIQVNVGRTGRVTPFAVLEPVLIAGSTVGMATLHNQDEVR------ 384

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFPSFCPICQSRVVRDL 445
              R G  +++GD V+V++AG+VIP+++  +V+ R     + F  P+ CP C +     L
Sbjct: 385 ---RKG--VQIGDTVVVRKAGDVIPEILGPVVDLREGRTLREFVMPTHCPECGTA----L 435

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
            P     V   RC    +C AQ  ER+ H   R AF+IEG+G +       +     +I 
Sbjct: 436 APAKENDVDI-RCPNSRSCPAQLRERVFHLAGRGAFDIEGMGYEAAVALLAAG----AIT 490

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
              DIF L   +           G    +   L  ++   ++  L R + +L IRHVG  
Sbjct: 491 DEGDIFDLDEDRLLGVPLFTTKAGALSANGRKLLANLQICKDQPLWRVLVALSIRHVGPT 550

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            AR+L          AQ+  ++ A        L     VG  IA A++E++     +   
Sbjct: 551 AARAL----------AQQFGSLPAIRAAAQEELAAAEGVGPTIADAVIEWF----TVDWH 596

Query: 626 EALLKEVSPSIGRHEKNVSSEIENK----KLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
             ++ + + +  R +  ++   E       +V TG L    R +A+  +   GA  +A +
Sbjct: 597 RQIVDKWAAAGVRMQDEITDRPEQTLAGLSVVVTGGLDGFSRDEAKAALLSRGAKAAASV 656

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KT  ++VGD+PGSK +KA  LGV I++E  F  LL++
Sbjct: 657 SAKTAFVVVGDSPGSKYDKALGLGVPILDEAGFRVLLER 695


>gi|113954059|ref|YP_731994.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9311]
 gi|122945488|sp|Q0I6C8|DNLJ_SYNS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|113881410|gb|ABI46368.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9311]
          Length = 697

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 218/707 (30%), Positives = 357/707 (50%), Gaps = 63/707 (8%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P + D  YD L R    + H    L  ++ P     ++GG +      V+H I
Sbjct: 30  AYYVLDAPDMEDPVYDQLYRELQDLEHQDSTLVSADSPT---QRVGGRLADGFRSVSHRI 86

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFFTLEPKIDGTMITIRYEKGKF 148
              SL+  +N ++L  + +R+ +   +         ++    E KIDG  + + YE G  
Sbjct: 87  SLFSLDNAFNRDELHGWYSRLLKALDRTPAAGSPPPTLPMVGELKIDGNALALSYENGVL 146

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG  GE+++A +R I +IP  L L  +P  +EVRGE +I    F A+N+E ++
Sbjct: 147 VRAATRGDGEQGEEITANVRTISSIPLRLHLEPVPAWVEVRGEAFIPDATFHAINNERLS 206

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK---GQYEMLQKMRC 263
                +ANPRNA +G LR+L+P+ +  R L+FF + L    E   +    Q++ LQ +  
Sbjct: 207 RDESLFANPRNACAGTLRQLDPSVVAARRLDFFAYTLHLPDEWQERRPLTQWDALQWLGD 266

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
            GF VN           +  +++   + R  L Y  DG+V K+++  LQ   G   ++PR
Sbjct: 267 AGFKVNPNAGLLPDLQAVEQFFDTWDTERRQLDYATDGVVVKLNDLRLQDAAGFTQKAPR 326

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W I+ K+  ++A +++L I  Q+GRTG++TPVA  EPV + G  ++ A+LHN D +  L 
Sbjct: 327 WAIALKYPAEEAPSKILRISYQVGRTGVITPVAEFEPVGLAGTSVSRASLHNADRLVEL- 385

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                     D+  GD ++V++AGE+IP+VV ++   R   AQP      CP C S +VR
Sbjct: 386 ----------DLHDGDTIVVRKAGEIIPEVVRVLPELRPALAQPLEITKTCPACGSTLVR 435

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           + N       +A RC    +C A     L+H+VS+ A +I+GLG + ++      D    
Sbjct: 436 ESNE------SATRCINS-SCPAILRGALRHWVSKGAMDIDGLGSKLIEQLV---DRGLV 485

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
             I AD++ L      S  ++      G  S  NL  ++N  R+    + ++ LGI HVG
Sbjct: 486 QSI-ADLYRLDMALLGSLERM------GSKSAENLIQALNASRSQGWAKQLYGLGIHHVG 538

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A+++   + +    A  +N    H  +   S+  +  VG  IAQ++ +++ +P N  
Sbjct: 539 DVNAKAITTAFPN----ADSLNQAACHAPE---SITAIFGVGKEIAQSLQQWFSSPAN-- 589

Query: 624 AVEALLKEV-----SPSIGRHEKNVSS------EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             + LL E+     S S+   E++ ++       +     V TGTL  + R +A+E +  
Sbjct: 590 --QRLLDELRSLGFSLSLNEEEQSRATTAAANHHLTGSTFVLTGTLPTLTRSQAKEQIEA 647

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  VS  +S+KT  ++ G+  GSKL KAQ+LGV I++EE    +L+
Sbjct: 648 CGGKVSGSVSKKTSYLVAGEEAGSKLTKAQELGVSILDEEALQNMLR 694


>gi|325510083|gb|ADZ21719.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018]
          Length = 669

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 220/712 (30%), Positives = 362/712 (50%), Gaps = 70/712 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +E++ +   YY    PI+ D EYD   +R D +     +      P  P N++G 
Sbjct: 11  MQELIEELNKYSYSYYVLDNPIVADKEYD---KRYDELVE-LEEKTGITYPYSPTNRVGD 66

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKI 134
            +     K TH     SL+K  + E++  +  R  +   + + N       + + L  K 
Sbjct: 67  VILKQFQKYTHKSRLWSLDKAQSFEEIIDWHNRNKKAVAEYNSNHEDKLPELKYVLTKKF 126

Query: 135 DGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           DG  I   Y E G  + AA RG G  GED+++  + I +IP  L +    ++EV GE  +
Sbjct: 127 DGLTINCTYDESGVMIKAATRGTGVIGEDITSQAKTIKSIP--LKIKNGSVVEVHGEAIM 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAK 252
           +K  F   N +       P  N RN A+G LR LN  +  R  L+ F + +G       K
Sbjct: 185 TKTAFNEYNKK----AEVPLKNLRNGAAGALRNLNVRETARRNLSAFFYDVGYNEGKAFK 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              EM+  ++ +GFPV+  +++ NT   I      +  IRS+L YDIDG+V  +D++  +
Sbjct: 241 SYMEMMNFIKEMGFPVDEYLKECNTIEEINKEIQYVGDIRSSLDYDIDGVVIVIDDYRTR 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G ++  AT
Sbjct: 301 EYLGYTVKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVIVKRAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N D I           G + +++G RV V+R+ +VIP+++ +         +  + P+
Sbjct: 361 LNNMDDI-----------GRKKVKIGSRVFVRRSNDVIPEIMGVTEETEGETNEIEA-PT 408

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            CP C S +V++           H  C   L+C  Q ++ + HF SR+A NIEG  ++  
Sbjct: 409 ICPYCGSEIVKE---------GVHLFCENTLSCKPQMVKSIVHFASREAMNIEGFSEKTA 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+      +I+  +D++ + + +  S  K      F D   +NL ++I K +   L 
Sbjct: 460 EQLFEK----LNIKSISDLYRITKEELMSLDK------FKDKKASNLINAIEKSKKCDLA 509

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            F++SLGI +VG + A  L K + S++N  +            +  LI V  +G I+A++
Sbjct: 510 SFVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYDELILVQDIGSIVAES 559

Query: 612 IVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           IVEF++  +    +E  L E     V+P     E  V +    K +V TGTLQ   R   
Sbjct: 560 IVEFFKQEK----IEKSLNELFELGVTPFYEESEV-VENAFTGKTVVATGTLQNYSRTAI 614

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +E +  LGA V+  +S+KTD +I G+N GSK +KA QLGVKI+ EE+F  L+
Sbjct: 615 KEKLESLGANVAGSVSKKTDYVIAGENAGSKYDKAVQLGVKILTEEEFEELI 666


>gi|308063596|gb|ADO05483.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Sat464]
          Length = 656

 Score =  330 bits (846), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 234/701 (33%), Positives = 366/701 (52%), Gaps = 68/701 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +         P+  ++   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDELYQELKVYEEKNPNNIQA---NSPTQKVGAITTNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ N  E IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYN--EEIEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+++ ++IT  R L F   G+GK S  F+  + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQID-SEITKKRKLQFIPWGVGKHSLNFSSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  +   ++  SS   +K +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDMTEEKQENSSVFNHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|15895931|ref|NP_349280.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824]
 gi|81529669|sp|Q97FQ5|DNLJ2_CLOAB RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|15025704|gb|AAK80620.1|AE007765_2 NAD-dependent DNA ligase [Clostridium acetobutylicum ATCC 824]
          Length = 669

 Score =  330 bits (846), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 219/708 (30%), Positives = 360/708 (50%), Gaps = 70/708 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +E++ +   YY    PI+ D EYD   +R D +     +      P  P N++G 
Sbjct: 11  MQELIEELNKYSYSYYVLDNPIVADKEYD---KRYDELVE-LEEKTGITYPYSPTNRVGD 66

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKI 134
            +     K TH     SL+K  + E++  +  R  +   + + N       + + L  K 
Sbjct: 67  VILKQFQKYTHKSRLWSLDKAQSFEEIIDWHNRNKKAVAEYNSNHEDKLPELKYVLTKKF 126

Query: 135 DGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           DG  I   Y E G  + AA RG G  GED+++  + I +IP  L +    ++EV GE  +
Sbjct: 127 DGLTINCTYDESGVMIKAATRGTGVIGEDITSQAKTIKSIP--LKIKNGSVVEVHGEAIM 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAK 252
           +K  F   N +       P  N RN A+G LR LN  +  R  L+ F + +G       K
Sbjct: 185 TKTAFNEYNKK----AEVPLKNLRNGAAGALRNLNVRETARRNLSAFFYDVGYNEGKAFK 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              EM+  ++ +GFPV+  +++ NT   I      +  IRS+L YDIDG+V  +D++  +
Sbjct: 241 SYMEMMNFIKEMGFPVDEYLKECNTIEEINKEIQYVGDIRSSLDYDIDGVVIVIDDYRTR 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G ++  AT
Sbjct: 301 EYLGYTVKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVIVKRAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N D I           G + +++G RV V+R+ +VIP+++ +         +  + P+
Sbjct: 361 LNNMDDI-----------GRKKVKIGSRVFVRRSNDVIPEIMGVTEETEGETNEIEA-PT 408

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            CP C S +V++           H  C   L+C  Q ++ + HF SR+A NIEG  ++  
Sbjct: 409 ICPYCGSEIVKE---------GVHLFCENTLSCKPQMVKSIVHFASREAMNIEGFSEKTA 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+      +I+  +D++ + + +  S  K      F D   +NL ++I K +   L 
Sbjct: 460 EQLFEK----LNIKSISDLYRITKEELMSLDK------FKDKKASNLINAIEKSKKCDLA 509

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            F++SLGI +VG + A  L K + S++N  +            +  LI V  +G I+A++
Sbjct: 510 SFVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYDELILVQDIGSIVAES 559

Query: 612 IVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           IVEF++  +    +E  L E     V+P     E  V +    K +V TGTLQ   R   
Sbjct: 560 IVEFFKQEK----IEKSLNELFELGVTPFYEESEV-VENAFTGKTVVATGTLQNYSRTAI 614

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           +E +  LGA V+  +S+KTD +I G+N GSK +KA QLGVKI+ EE+F
Sbjct: 615 KEKLESLGANVAGSVSKKTDYVIAGENAGSKYDKAVQLGVKILTEEEF 662


>gi|33864448|ref|NP_896008.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
           9313]
 gi|81576658|sp|Q7V3Z9|DNLJ_PROMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33641228|emb|CAE22358.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9313]
          Length = 696

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 217/732 (29%), Positives = 361/732 (49%), Gaps = 79/732 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K  + L Q ++     YY    P + D+ YD L R    +      L     P+ P  +I
Sbjct: 10  KRAAELRQLLNQAAHSYYVLDTPTMEDAVYDRLYRELLNLEAKDSSLL---TPDSPTQRI 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-----QKKDDNSIFFTLEPK 133
           GG        V H IP LSL+  +N+++L  +  R+ +        K     +    E K
Sbjct: 67  GGAPAQGFASVQHRIPLLSLDNAFNVDELTGWYVRLAKLLGHQTNPKTPQPDLSMVGELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           IDG  + + YE G  + AA RGDG +GE+++A +R I +IP  L L + P  +EVRGE +
Sbjct: 127 IDGNALALSYEHGVLIRAATRGDGANGEEITANVRTIASIPLRLQLVHPPAWLEVRGEAF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251
           I  + F  +N      G   +ANPRNA +G LR+L+P  + +R L+FF + L       A
Sbjct: 187 IPNSTFADINTARGKRGDVAFANPRNACAGTLRQLDPKVVASRQLDFFAYTLHLPDNWQA 246

Query: 252 KG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           K         Q+  LQ ++ +GF VN           + +++      R  LPY  DG+V
Sbjct: 247 KAHDPARPMNQWAALQWLQAIGFKVNPNTALLADLTAVENFFKLWDEDRHQLPYATDGVV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+++  LQ+  G   ++PRW I+ K+A ++A ++LL +  Q+GRTG +TPVA  E + +
Sbjct: 307 VKLNDLQLQETAGFTQKAPRWAIALKYAAEEAPSKLLRLTCQVGRTGAVTPVAEFEAIPL 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ ATLHN + +  L           D+  GD ++V++AGE+IP+V+ ++   R  
Sbjct: 367 AGTSVSRATLHNANRVSEL-----------DLHSGDTIVVRKAGEIIPEVIGVLRELRPA 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            AQ    P  CP C+S +VR+ +       AA RC    +C A     L+H+VS+ A ++
Sbjct: 416 GAQTLKLPHICPECRSDLVREEDE------AATRCVNS-SCPAILRGTLRHWVSKGALDV 468

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG + ++           ++  AD++ L+     S  ++      G  S  NL  ++ 
Sbjct: 469 DGLGSKLIEQLVNRG----LVQSIADLYALEASLLASMDRM------GSKSTANLITALQ 518

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-------QEINNIIAHNNDDWL 596
             ++    + ++ LGI HVG   A++LAK + S    A       ++I ++         
Sbjct: 519 ASKSKPWHKQLYGLGIHHVGEVNAKALAKKFPSAATLATAACKAPEQITSVFG------- 571

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNI----------CAVEALLKEVSPSIGRHEKNVSSE 646
                  VG+ IAQ++ +++  P N            ++EA   E++    ++++ VS  
Sbjct: 572 -------VGNEIAQSLQQWFATPANQQLLAKLKQLGISLEANEDELAHDTDQNQRTVS-- 622

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E +  V TGTL  + R +AQ  +   G  V+  +S+ T  ++ G   GSKL KA++L V
Sbjct: 623 LEGQTFVLTGTLPTLSRSEAQALIEASGGKVNNSVSKNTSYVVAGVAAGSKLNKAEKLEV 682

Query: 707 KIMNEEQFLFLL 718
            ++N+E+ L LL
Sbjct: 683 TVLNQEELLKLL 694


>gi|271969279|ref|YP_003343475.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
 gi|270512454|gb|ACZ90732.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
          Length = 726

 Score =  330 bits (845), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 225/750 (30%), Positives = 372/750 (49%), Gaps = 81/750 (10%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +P+ AL       EL+ L ++ ++    Y+    P + D++YD   R    I    P L 
Sbjct: 8   VPVAALD---RHAELTELVEQANWR---YHVLDSPTVSDAQYDTWMRELRGIEEEHPSL- 60

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  K+G  ++     V H     SL+  +N +DL  +  R  R  ++   +  
Sbjct: 61  --RTPDSPTQKVGAPISSDFTPVAHLQRMESLDNAFNADDLASWQARAERLAER---DPA 115

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185
            +  E KIDG  I + YEKG+ V  A RGDG  G+DV+A +R +  +P R+   ++P+++
Sbjct: 116 PYLCELKIDGLAIALVYEKGRLVRGATRGDGRVGDDVTANVRTVAGVPHRLAGDDVPDLV 175

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEVY+  + F+ LN++++A G+ P+ANPRN+A+G LR  +P     R L+  VHG+G
Sbjct: 176 EIRGEVYMPVDGFVKLNEQLVAAGKAPFANPRNSAAGSLRMKDPRITAQRPLHLIVHGVG 235

Query: 245 K-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           +       + Q  + +++R  G PV++  +  +   GI ++    +  R    Y+IDG+V
Sbjct: 236 RWEGTALPRTQSGVYERLREFGLPVSDLYKVVDDLDGINAFIEFYREHRHDPAYEIDGVV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD   LQ  LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP   +EP+ +
Sbjct: 296 VKVDRIELQNNLGSTSRAPRWAIAYKYPPEEVNTKLLDIQVGVGRTGRVTPYGVMEPIVV 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  ATLHN           +V R G  +R+GD V++++AG+VIP++V  +V+ R  
Sbjct: 356 AGSTVERATLHN---------GSEVARKG--VRIGDTVVLRKAGDVIPEIVGPVVDLRDG 404

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + F+ P+ CP C + +  +   K G   A  RC    AC AQ  ER+     R A +I
Sbjct: 405 TEREFTMPTHCPECGTALAYE---KEGD--ADLRCPNTRACPAQLRERIFFAAGRRALDI 459

Query: 484 EGLG---KQQLDFFFKSEDPAFSIRIPADIFTLQ-----------RRQQTSTTKIE---- 525
           EGLG      L      ++P   +R  AD+F L            R   T   K +    
Sbjct: 460 EGLGYVAATALTQPLPPQEP--PVRTEADLFDLTIERLLPIRSVVRDPDTGLPKTDPETG 517

Query: 526 ---------NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                    N  G    +   + + + K ++  + R + +L IRHVG   A+++A  + S
Sbjct: 518 DPKVVAFFANQSGEPSKNAEKMLEELEKAKDQPVWRVLVALSIRHVGPPTAQAIAAEFRS 577

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP--RNIC----AVEALLK 630
               A      +A              VG  +A AI ++++    R I     A    ++
Sbjct: 578 IDAIAAASEEELAAVEG----------VGPRVAAAIRDWFEVDWHREIVDRWKAAGVRME 627

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           +  P+       +   +     V TGTL+   R +A   +   G  VS+ +S+KT  ++ 
Sbjct: 628 DEPPT-----DQLPQTLAGLTFVVTGTLEAFTRDEAGAALAARGGKVSSSVSKKTAFLVA 682

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G+N GSK +KA +LGV I++EE    LL +
Sbjct: 683 GENAGSKFDKAVKLGVPILDEEGLRVLLAE 712


>gi|194246669|ref|YP_002004308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali]
 gi|254781388|sp|B3QZS5|DNLJ_PHYMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193807026|emb|CAP18462.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali]
          Length = 659

 Score =  330 bits (845), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 228/708 (32%), Positives = 376/708 (53%), Gaps = 61/708 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E+ +K +  L  +I+  +  YY  ++  + D +YDAL R    +   +P+      P  
Sbjct: 1   MEEIKKRIIFLIDKINKTNYEYYTLNESSLNDQQYDALFRELLYLESKYPEYNYKFSPT- 59

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              KIGG ++    K  H    LSL  ++NI++L+ F  RI     KK  N    T E K
Sbjct: 60  --TKIGGPISSKFHKFLHEKSMLSLNNVFNIKELKLFYDRI----SKKISNFTLLT-ELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y+KG    A  RGDG+ GE ++  ++ I  +P  L L  P  +EVRGEVY+
Sbjct: 113 IDGLAVSLKYKKGILDKAITRGDGYQGELITDNVKTIKELP--LKLKEPLDLEVRGEVYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
           S   F  LN       +  +ANPRNAASG LR+L+      R L+ F++ +    + F  
Sbjct: 171 SYESFNYLNQIRKKENKSLFANPRNAASGTLRQLDSKVAAERNLSIFLYTIVNPPK-FII 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIV---SYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q  +L+ +  L FPVNN       +  ++   SYY E   I++ L Y+ DG+V K++E 
Sbjct: 230 TQKSILEFLTYLQFPVNNYYEYVLNWDQLIKKISYYEE---IKNHLGYNTDGIVIKINEL 286

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S    +G  +++P+W I++KF   +  T + +I  QIGRTGI+TP+A L P  + G++I+
Sbjct: 287 SFHSIIGYTSKAPKWAIAYKFKVFKTETLINNILFQIGRTGIVTPIAELLPTIVDGSVIS 346

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
              LHN DYIK            +DIRV D VLV ++G +IP+++++I  +R  +  PF 
Sbjct: 347 KVNLHNFDYIK-----------QKDIRVNDFVLVHKSGSIIPEIIEVIKTKR-KNQIPFE 394

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
             + C  C +++++          + H C   L C  ++++ L +FVS+ A +I  LG Q
Sbjct: 395 MITHCYSCNTKLIKK--------DSNHFCF-NLDCEEKKIQELFYFVSKSAMDINVLGLQ 445

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L   F      F I   +D+++L + ++    ++E + GFG     N+  S+ K +N  
Sbjct: 446 TLKILFYK---GF-INNISDLYSLNQYKK----EVEELHGFGKKKFNNIIISLEKSKNKC 497

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L  F+  LGI++VG  +A+ L          AQ+  NI         SL+++  +G   A
Sbjct: 498 LSNFLIGLGIKNVGIHLAKIL----------AQKFENIDNLQKASIESLLKIDEIGIKSA 547

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKA 666
           Q I  F+ N +N+  +E   K +  ++   +      ++  +NKK++FTG L+K  R++A
Sbjct: 548 QNIKNFFLNSKNLKLIEK-FKNLGLNLFYFKSKNNIKNNIFKNKKVIFTGILEKYSRNQA 606

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           Q  V +LG V+   ++ KT+ +I+G NPGSKL KA++  +K++ E +F
Sbjct: 607 QNIVIELGGVIINSITNKTNYLILGKNPGSKLLKAKKFNIKVLQEHEF 654


>gi|319939188|ref|ZP_08013551.1| DNA ligase [Streptococcus anginosus 1_2_62CV]
 gi|319811584|gb|EFW07860.1| DNA ligase [Streptococcus anginosus 1_2_62CV]
          Length = 652

 Score =  329 bits (844), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 216/682 (31%), Positives = 351/682 (51%), Gaps = 59/682 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L      +   +P+  +   P+ P +++GG++     K  H  P
Sbjct: 19  YYTTDNPSVSDSEYDKLYHELLDLEKQYPEFVQ---PDSPTHRVGGKVLEGFEKYQHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  RI     +KD   + +  E KIDG  I++ YE G  V  A R
Sbjct: 76  LYSLQDAFSREELDVFDARI-----RKDFPDVSYLCELKIDGLSISLMYENGILVAGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +P  ++  VRGE Y+ ++ F A+N      G   
Sbjct: 131 GDGSVGENITENLKRVKDIP----LKLPSEVDMTVRGECYMPRSSFDAVNQLRQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           +ANPRNAA+G LR+L+ T I    N       + S   A  Q  +L ++   GF VN   
Sbjct: 187 FANPRNAAAGTLRQLD-TAIVAKRNLATFLYQEASPTSATSQEAVLNQLSKNGFSVNERH 245

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
             A++      +  E+   R  LPYDIDG+V KV++  +Q++LG   ++P+W I++KF  
Sbjct: 246 ILAHSMDEAWQFIEEINQEREQLPYDIDGVVIKVNDLVVQEELGFTVKAPKWAIAYKFPA 305

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI             
Sbjct: 306 EEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AE 354

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           +DIR  D V+V +AG++IP V+ ++ ++R    +    P  CP C S ++   +      
Sbjct: 355 KDIRKDDTVIVYKAGDIIPAVLRVVESKRQ-SKEKLEIPKNCPSCNSELIHFEDE----- 408

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
             A RC     C AQ  E L HF SRDA NI GLG   ++  F  +       +  D+  
Sbjct: 409 -VALRCINP-RCPAQIKEGLIHFASRDAMNITGLGPAVVEKLFDQQ-------LVNDVAG 459

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           + R       ++EN   F + S   LY +I   +  S E+ +F LGIRHVG++ ++ L +
Sbjct: 460 IYRLTVKDLLQLEN---FKEKSANKLYTAIQASKENSAEKLLFGLGIRHVGSKASQILLE 516

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRNICAVEALLKE 631
           ++   +  A+     IA  +           +G +IA+++  ++ Q   +I   E  LKE
Sbjct: 517 HFHDLEQLAKAKREEIAALDS----------LGMVIAESLSSYFAQEGTHILLSE--LKE 564

Query: 632 VSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
              +     + V+++  +    +V TG L+++ R +A++ +  LGA V+  +S+KT +++
Sbjct: 565 AGLNFTYLGEKVAADAALSGLTVVLTGKLERLNRSEAKKKLESLGAKVTNSVSKKTSLVV 624

Query: 690 VGDNPGSKLEKAQQLGVKIMNE 711
            G + GSKL KAQ+LG+ I +E
Sbjct: 625 AGADAGSKLTKAQELGIIIRDE 646


>gi|171920195|ref|ZP_02931577.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|171902576|gb|EDT48865.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC
           27813]
          Length = 673

 Score =  329 bits (844), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 222/714 (31%), Positives = 380/714 (53%), Gaps = 64/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + ++  L+Q++   +  YY    P + D  YD   R    + + +P    +   N 
Sbjct: 1   MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130
           P  K+GG ++    KV H  P LSL   +N +DL+KF        Q   + S+    + +
Sbjct: 58  PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFD-------QDNQNASVDLKGYVV 110

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189
           EPKIDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRG
Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E
Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  K  YE +Q +R   F V++ + + +T + +++  +    +R  L Y IDG+V K++ 
Sbjct: 230 LGIKTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINN 289

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +  ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++
Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMV 349

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+
Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+  
Sbjct: 399 EPIINCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545
             ++ F+     A  I+  AD++ LQ+ ++   TS  KI+      + S +NL +SIN  
Sbjct: 453 AIINKFY----DANLIKNIADLYYLQKHKEFILTSDFKIK------EKSFSNLINSINNS 502

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SLE  + + GIRHVG  +A+ +AK +       + +  ++  N D+   L  V   G
Sbjct: 503 KKCSLEFLLTAFGIRHVGPNLAKKIAKQF-------KTMTALMRANFDE---LTNVDACG 552

Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           +  A +++ ++ +  N+  V  L      ++ +   I     N+  E +NK  V TG+  
Sbjct: 553 EKAASSLINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS 612

Query: 660 KIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            I R + +  + +   A V   +S+KTD ++VG   G+KLEKA+ LGVKI+  E
Sbjct: 613 -ISRDEIKTILEKYYHAKVKNSVSKKTDYVLVGTEAGTKLEKAKLLGVKIIENE 665


>gi|261839558|gb|ACX99323.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 52]
          Length = 657

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 236/699 (33%), Positives = 363/699 (51%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P+   S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGATTPNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKFDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVSATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +     +  I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FNSIQYLSLNKNYQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  + + ++  SS   +K +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKE 654


>gi|13357678|ref|NP_077952.1| DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762219|ref|YP_001752204.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|183508850|ref|ZP_02958298.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|81549679|sp|Q9PR23|DNLJ_UREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781447|sp|B1AIB0|DNLJ_UREP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|11272940|pir||F82930 DNA ligase UU121 [imported] - Ureaplasma urealyticum
 gi|6899079|gb|AAF30527.1|AE002113_1 DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827796|gb|ACA33058.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|182675825|gb|EDT87730.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC
           33697]
          Length = 673

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 223/714 (31%), Positives = 379/714 (53%), Gaps = 64/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + ++  L+Q++   +  YY    P + D  YD   R    + + +P    +   N 
Sbjct: 1   MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130
           P  K+GG ++    KV H  P LSL   +N +DL+KF        Q   + S+    + +
Sbjct: 58  PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFD-------QDNQNASVDLKGYVV 110

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189
           EPKIDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRG
Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E
Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  K  YE +Q +R   F V++ + + +T + +++  +    +R  L Y IDG+V K++ 
Sbjct: 230 LGIKTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINN 289

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +  ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++
Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMV 349

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+
Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+  
Sbjct: 399 EPIINCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545
             ++ F+     A  I+  AD++ LQ+ ++   TS  KI+      + S +NL +SIN  
Sbjct: 453 AIINKFY----DANLIKNIADLYYLQKHKEFILTSDFKIK------EKSFSNLINSINNS 502

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SLE  + + GIRHVG  +A+ +AK + +           + H N D L+   V   G
Sbjct: 503 KKCSLEFLLTAFGIRHVGPNLAKKIAKQFKTMT--------ALMHANFDELT--NVDACG 552

Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           +  A +++ ++ +  N+  V  L      ++ +   I     N+  E +NK  V TG+  
Sbjct: 553 EKAALSLINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS 612

Query: 660 KIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            I R + +  + +   A V   +S+KTD ++VG   G+KLEKA+ LGVKI+  E
Sbjct: 613 -ISRDEIKTILEKYYHAKVKNSVSKKTDYVLVGTEAGTKLEKAKLLGVKIIENE 665


>gi|225550545|ref|ZP_03771494.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225379699|gb|EEH02061.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 673

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 222/719 (30%), Positives = 378/719 (52%), Gaps = 74/719 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD   R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130
           P  ++GG ++    KV H  P LSL   ++  DLRKF        Q   + S+    + +
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFD-------QDNQNASVDLKGYVV 110

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189
           EPKIDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRG
Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E
Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++ 
Sbjct: 230 LGIKTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINN 289

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +  ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++
Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIV 349

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+
Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
              + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+  
Sbjct: 399 ESITNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545
             ++ F+     A  I+  AD++ LQ+ ++    S  KI+      D S +NL +SIN  
Sbjct: 453 AIINKFY----DANLIKNVADLYYLQKHKEFILASDFKIK------DKSFSNLINSINNS 502

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY-----LSYQNFAQEINNIIAHNNDDWLSLIR 600
           +  SLE  + + GIRHVG  +A+ LAK +     L + NF +               L  
Sbjct: 503 KTRSLEFLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHANFGE---------------LTN 547

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVF 654
           V   G+  A +++ ++ +  N+  V  L      ++ +   I     N+  E +NK  V 
Sbjct: 548 VDACGEKAALSLINWFNDDHNVSLVNQLQQVGLNMEYIDDFIYDDNINIIDEYKNKTFVI 607

Query: 655 TGTLQKIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           TG+   I R + +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+  E
Sbjct: 608 TGSFS-ISRDEIKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKIIENE 665


>gi|317180385|dbj|BAJ58171.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F32]
          Length = 656

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 237/701 (33%), Positives = 365/701 (52%), Gaps = 68/701 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P+   S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDKLYQELKAYEEKNPN---SIQANSPTQKVGAITPNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNSHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FNSIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  I + ++  SS   +K +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDIAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L+ ++
Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKGFD 656


>gi|315187042|gb|EFU20799.1| DNA ligase, NAD-dependent [Spirochaeta thermophila DSM 6578]
          Length = 697

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 235/723 (32%), Positives = 365/723 (50%), Gaps = 73/723 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++A++E+  L + +   D  YY   +P + D EYD+L  R   +   FP L R   P
Sbjct: 1   MTEQEAKREIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFERLKTLETRFPHLRR---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P+ ++G ++ +   +V H+IP LSL+K +   ++  +I +  R   K     + F +E
Sbjct: 58  DSPIQRVGSDLTVDFPEVAHTIPVLSLDKAYTETEVLSWIEKTERAAGK----PLGFVIE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RG 189
            KIDG  + + Y  G    A  RG+G  G D++   R I  IP    L IPE  EV  RG
Sbjct: 114 EKIDGVSLVLYYRGGILDRAVTRGNGRVGNDITPNARTIRQIP----LRIPENGEVVVRG 169

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           EVY+    F    DE+ A    PYANPRN A G+LRR N  ++ R    F+   G     
Sbjct: 170 EVYLPLQYF----DEINARMEVPYANPRNLAGGVLRRKNSAEVARVPLHFLAYDGYLP-- 223

Query: 250 FAKGQY-EMLQKMRCLGFPVNNGVRQANTFHG-------IVSYYNEMKSIRSTLPYDIDG 301
           F    Y E L  +   GFPVN   R      G       I ++    +S R+TL Y IDG
Sbjct: 224 FPVATYTESLDYLIDWGFPVNP--RHERLPAGTPDREARIRTFIERERSGRATLDYQIDG 281

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           LV+KV+E  ++++LG     PRW I++KF   QA T LL ID+Q+GRTG +TPVARL+PV
Sbjct: 282 LVFKVNELDVRERLGYTGHHPRWAIAYKFEAPQAVTELLRIDVQVGRTGRVTPVARLKPV 341

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ I+N TLHNEDY++ L           ++  GD V + + G+VIP +  ++  E+
Sbjct: 342 ELSGSTISNVTLHNEDYVQAL-----------ELAPGDLVAISKRGDVIPAIEKVV--EK 388

Query: 422 HPDAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           + +  P +  P  CP C S + R           AH       C A    RLK FVS   
Sbjct: 389 NEEGVPVWRMPEHCPECGSPLERR---------GAHHFCPNRNCPAVITGRLKFFVSPKQ 439

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I  LG + +DF  +     +  RIP D++T          K+ +  GFG+  ++ +  
Sbjct: 440 MDIRVLGNETIDFLVEK---GYIRRIP-DLYTF------DYWKLLDEPGFGEKKISQIVQ 489

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA-HNNDDWLSLI 599
            I + +       + +LGI  VG  +  +L +  ++       I+ +    +  D  +L 
Sbjct: 490 GIEESKKRPFSTVLVALGIPEVGPSVVETLIRGGIT------SIDRLFTIADRGDVEALT 543

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGT 657
           R+  +G+  A+ ++E  ++P     +E L K    S       V S    E +    TG+
Sbjct: 544 RLEGIGEKTARQLMETLRDPEWRKEIEELRK-AGLSFEEERPTVVSGGPFEGQAWCVTGS 602

Query: 658 LQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +    R KA+E +  LG  V + +S KT  ++VG+NPGSKLEKA+ LGV++++E+QF+ 
Sbjct: 603 FRHFTPRSKAEELIASLGGKVVSSVSSKTTHLLVGENPGSKLEKARSLGVRLVSEDQFIE 662

Query: 717 LLQ 719
           +L+
Sbjct: 663 MLK 665


>gi|185178794|ref|ZP_02554752.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188024241|ref|ZP_02569990.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188518556|ref|ZP_03004016.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|209554205|ref|YP_002284543.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225551582|ref|ZP_03772528.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|254781448|sp|B5ZAV3|DNLJ_UREU1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|184209414|gb|EDU06457.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188018900|gb|EDU56940.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188997873|gb|EDU66970.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|209541706|gb|ACI59935.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225379397|gb|EEH01762.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
          Length = 673

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 222/719 (30%), Positives = 378/719 (52%), Gaps = 74/719 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD   R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130
           P  ++GG ++    KV H  P LSL   ++  DLRKF        Q   + S+    + +
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFD-------QDNQNASVDLKGYVV 110

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189
           EPKIDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRG
Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E
Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++ 
Sbjct: 230 LGIKTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINN 289

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +  ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++
Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIV 349

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+
Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
              + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+  
Sbjct: 399 ESITNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545
             ++ F+     A  I+  AD++ LQ+ ++    S  KI+      D S +NL +SIN  
Sbjct: 453 AIINKFY----DANLIKNVADLYYLQKHKEFILASDFKIK------DKSFSNLINSINNS 502

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY-----LSYQNFAQEINNIIAHNNDDWLSLIR 600
           +  SLE  + + GIRHVG  +A+ LAK +     L + NF +               L  
Sbjct: 503 KTRSLEFLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHANFGE---------------LTN 547

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVF 654
           V   G+  A +++ ++ +  N+  V  L      ++ +   I     N+  E +NK  V 
Sbjct: 548 VDACGEKAALSLINWFNDDHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVI 607

Query: 655 TGTLQKIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           TG+   I R + +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+  E
Sbjct: 608 TGSFS-ISRDEIKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKIIENE 665


>gi|261838144|gb|ACX97910.1| DNA ligase [Helicobacter pylori 51]
          Length = 656

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 233/701 (33%), Positives = 367/701 (52%), Gaps = 68/701 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P+  ++   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDPIVSDALYDELYQELKAYEEKNPNGIQA---NSPTQKVGAITTNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNSHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++Q++LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHALIREREGFFALLDGMVIVVNELNIQRELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPIEIAGAMITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LA+Y L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  I + ++  SS   +K +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDIAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKHLKEFD 656


>gi|297379814|gb|ADI34701.1| DNA ligase, NAD-dependent [Helicobacter pylori v225d]
          Length = 656

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 234/701 (33%), Positives = 364/701 (51%), Gaps = 68/701 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P+   S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGATTPNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVSATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  + +++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMVRSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  + + ++  SS   +K +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDMAKEKQESSSVFNHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++++
Sbjct: 616 SAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656


>gi|218260659|ref|ZP_03475861.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224427|gb|EEC97077.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii
           DSM 18315]
          Length = 606

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 219/652 (33%), Positives = 344/652 (52%), Gaps = 55/652 (8%)

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136
           +G +++    +V H  P LSL   ++ ++++ F  RI R     D N  F    E K DG
Sbjct: 1   MGSDLSKEFEQVVHKYPMLSLGNTYSEDEVKDFYERIAR-----DLNEPFEIVAELKYDG 55

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
           T I++ YE G+ V A  RGDG  G+DV+A ++ I ++P +++    P   E+RGE+ +  
Sbjct: 56  TSISLTYEDGRLVRAVTRGDGTRGDDVTANVKTIRSVPLKLMGDGYPAAFEIRGEILLPW 115

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN-FFVHGLGKTSEIFAKG 253
            +F  LN E        +ANPRNAASG L++ NP  +  R L+ +F + LG+  E+ A+ 
Sbjct: 116 AEFDRLNKEREQQEEPLFANPRNAASGTLKQQNPAIVAARKLDAYFYYLLGE--ELPAET 173

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ L+  R  GF V N +R  N+   I  Y     + R  LP   DG+V KV+    Q 
Sbjct: 174 HFDNLEAARSWGFKVPNVIRVCNSLEDIYDYIAYWDAERKNLPVATDGIVLKVNSLRQQL 233

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G  +  A+L
Sbjct: 234 NLGFTAKSPRWAIAYKFQAERAVTRLNSVSFQVGRTGAVTPVANLEPVLLAGTTVKRASL 293

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432
           HN D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F  
Sbjct: 294 HNADIIEGL-----------DLHLGDKVFVEKGGEIIPKIVGVDVEARGLLVGDKVRFIR 342

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + ++R          AAH C     C  Q   +++HFV+R A NI  +G + ++
Sbjct: 343 SCPECGTPLMRPEGE------AAHYCPNEAGCPPQIKGKIEHFVTRRAMNI-NMGPETVE 395

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++    A  I+  AD++TL+       + +  +  + D S  NL  S+ + + +  ER
Sbjct: 396 DLYE----AGYIKDTADLYTLE------ISDLLRLERWADKSARNLMASLEESKQVPFER 445

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            ++ LGIR VG  +A+ L   + S     Q            +  LI V  +G+ IA++I
Sbjct: 446 VLYGLGIRFVGETVAKRLVAAFHSMDQLEQA----------SFEDLIAVDEIGERIARSI 495

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           + ++ + RN   V   LKE    +   E+   N S +++   +V +GT  +  R + +  
Sbjct: 496 IAYFADERNRNLVNR-LKEYGLRMSVAEEVLANRSEKLKGLSIVISGTFARHSRDEYKAM 554

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + Q G   S  +S KTD I+ GDN G +KLEKA +LGVKI+NE++FL ++ +
Sbjct: 555 IEQHGGKNSGSVSGKTDYILAGDNMGPAKLEKAAKLGVKIINEDEFLNMIAE 606


>gi|223039682|ref|ZP_03609968.1| DNA ligase, NAD-dependent [Campylobacter rectus RM3267]
 gi|222879065|gb|EEF14160.1| DNA ligase, NAD-dependent [Campylobacter rectus RM3267]
          Length = 647

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 227/692 (32%), Positives = 358/692 (51%), Gaps = 70/692 (10%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
            YY    PI  D EYD L  +      A P D++       P  ++GGE++    K  HS
Sbjct: 19  AYYTDDAPIATDEEYDELYHKVLEFERANPGDISMF----SPTKRVGGEVSDGFVKARHS 74

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
           +   S+E I++ E+L  ++ R        D   + F L+PK DG  + + YE G  V A 
Sbjct: 75  VRMWSMEDIFSFEELLAWLKR-------GDKEGLEFALQPKFDGASLNLLYENGALVRAI 127

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            RGDG +GEDV++  + I  IP  ++ N    IE+RGEV I+KNDF  +N      G   
Sbjct: 128 TRGDGITGEDVTSNAKVIKNIPLQIAYNGR--IEIRGEVVIAKNDFDEINFARAQRGEPQ 185

Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
            +NPRNAA+G LR+L+     +R L F   G G+ + +  +   +M+  +   GF     
Sbjct: 186 LSNPRNAAAGSLRQLDSAVTASRRLRFKPWGYGEQN-LGLETYSQMMDFIYSQGFEREEF 244

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            +   T   I   Y ++ + R + P+ +DGLV +V   +  ++LG   + P++M+++KF 
Sbjct: 245 FKICRTAEQIEEAYKQLVAQRDSKPFMMDGLVVRVQSIAASEELGYTEKFPKFMVAYKFP 304

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRLLD+  Q+GR+G++TPV  LEPVNI GA + +ATLHN D I+ L         
Sbjct: 305 AIEKTTRLLDVAFQVGRSGVVTPVGVLEPVNIDGATVKSATLHNFDEIERL--------- 355

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
              ++ GD + + R+G+VIPK+  +    R     P   P  CP+C S ++ +     G 
Sbjct: 356 --GVQKGDFISIIRSGDVIPKITGVFKQRRDGSQMPIERPRECPVCGSMLLDE-----GV 408

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
            V   +C   L C A+ +  L HF S+   NI+GLG+  ++  F++       +I ADI+
Sbjct: 409 FV---KCQ-NLECKARVINSLIHFASKKCLNIDGLGEAIVNQLFEA---GLVAKI-ADIY 460

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L      +   + ++ GF D  + NL  +I   R  +L  FI SLGI H+G   A+ +A
Sbjct: 461 EL------TAQDLASLEGFKDKKIANLLGAIEASRTPALHSFIASLGIEHIGEVAAKKIA 514

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV---GDIIAQAIVEFYQ-NPRNICAVEA 627
           + Y   QN+ +             LS   V  +   G+ +A++  EF Q N +N+   + 
Sbjct: 515 QIYP--QNWRE-------------LSFGEVAAIEGFGEAMAESYAEFMQVNRQNL---DE 556

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           +L+ VSP    +E   S+ I  K  V TGTL K  R + +  +   GA VS  +S+KTD 
Sbjct: 557 ILRFVSPQAQIYETKQSA-ISGKTFVITGTLSK-SRDEFKRVLEANGAKVSGSVSKKTDF 614

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ GD  GSKL+KA++LGVK + E++   +++
Sbjct: 615 VLYGDEAGSKLDKARELGVKAITEDELRRMIE 646


>gi|332673586|gb|AEE70403.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 83]
          Length = 656

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 236/701 (33%), Positives = 362/701 (51%), Gaps = 68/701 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P+   S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGAITPNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K +H +   SL+ ++N  +L+ ++ RI + +         F   PK+DG  + + Y+ GK
Sbjct: 72  KNSHLMRMWSLDDVFNQNELQAWLQRILKAYPNAS-----FVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ N  E IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYN--EEIEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRN ASG LR+L  + IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNTASGSLRQLG-SKITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSSIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  + + ++  SS   NK +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDMTKEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L+ ++
Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKGFD 656


>gi|168216777|ref|ZP_02642402.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239]
 gi|182381157|gb|EDT78636.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239]
          Length = 662

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 221/710 (31%), Positives = 362/710 (50%), Gaps = 68/710 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74
           +K +  L +E++ +   YY      + D +YD  K+  + +     DL +      P  P
Sbjct: 4   KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128
             ++G  +     K TH     SL+K   +E++R++  R  +F ++ +  S      + +
Sbjct: 57  TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFVEEHNRTSDEELPPLKY 116

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+
Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
            GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 175 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +
Sbjct: 231 EGAPFKTYMEMLNFIKVKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G 
Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D          + R G  +R+G  V V+R+ +VIP+++  +V E     +
Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               P  CP C + +V +           H  C   L C  Q ++ + HF  R+A NI G
Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K 
Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +LE F++SLGI +VG + A+ L K + S +N            N  +  L+ V  VG
Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENL----------ENATFEELVSVQDVG 549

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           DI+A++I+EF++  R +  +  LL   V+P   + E  + S    K +V TGTL+   R 
Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             +E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F
Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658


>gi|317181928|dbj|BAJ59712.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F57]
          Length = 656

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 235/701 (33%), Positives = 365/701 (52%), Gaps = 68/701 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P+  +S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQS---NSPTQKVGAITPNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQNELQTWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VS   + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVSATTRGNGLEGELVSTNAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FNSIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKICPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  + + ++  SS   +K +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKHLKEFD 656


>gi|186701986|ref|ZP_02554435.2| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|186700761|gb|EDU19043.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 673

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 221/714 (30%), Positives = 379/714 (53%), Gaps = 64/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + ++  L+Q++   +  YY    P + D  YD   R    + + +P    +   N 
Sbjct: 1   MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130
           P  K+GG ++    KV H  P LSL   +N +DL+KF        Q   + S+    + +
Sbjct: 58  PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFD-------QDNQNASVDLKGYVV 110

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189
           EPKIDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRG
Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E
Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  K  YE +Q +R   F V++ + + +T + +++  +    +R  L Y IDG+V K++ 
Sbjct: 230 LGIKTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINN 289

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +  ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++
Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMV 349

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+
Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+  
Sbjct: 399 EPIINCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545
             ++ F+     A  I+  AD++ LQ+ ++   TS  KI+      + S +NL +SIN  
Sbjct: 453 AIINKFY----DANLIKNIADLYYLQKHKEFILTSDFKIK------EKSFSNLINSINNS 502

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SLE  + + GIRHVG  +A+ +AK +       + +  ++  N D+   L  V   G
Sbjct: 503 KKCSLEFLLTAFGIRHVGPNLAKKIAKQF-------KTMTALMRANFDE---LTNVDACG 552

Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           +  A +++ ++ +  N+  V  L      ++ +   I     N+  E +NK  V TG+  
Sbjct: 553 EKAASSLINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS 612

Query: 660 KIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            I R + +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+  E
Sbjct: 613 -ISRDEIKTILEKYYHAKVKNSVSKKTDYVLAGTEAGTKLEKAKLLGVKIIENE 665


>gi|307718507|ref|YP_003874039.1| DNA ligase [Spirochaeta thermophila DSM 6192]
 gi|306532232|gb|ADN01766.1| DNA ligase [Spirochaeta thermophila DSM 6192]
          Length = 673

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 231/721 (32%), Positives = 366/721 (50%), Gaps = 69/721 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++A+KE+  L + +   D  YY   +P + D EYD+L  R   +   FP L R++ P
Sbjct: 1   MTEQEAKKEIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFDRLKTLEAQFPHLKRADSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                ++G ++ +   +V H+IP LSL+K +   ++  +I +     ++     +   +E
Sbjct: 61  T---QRVGSDLTVDFPEVAHTIPVLSLDKAYTETEVLSWIEKT----ERAAGRPLGCVIE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RG 189
            KIDG  + + Y  G    A  RG+G  G D++   R I  IP    L IPE  EV  RG
Sbjct: 114 EKIDGVSLVLYYRGGILDRAVTRGNGRVGNDITPNARTIRQIP----LRIPETGEVVVRG 169

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           EVY+    F    DE+ A    PYANPRN A G+LRR N  ++ R    F+   G     
Sbjct: 170 EVYLPLQYF----DEINARMEVPYANPRNLAGGVLRRKNSAEVARVPLHFLAYDGYLP-- 223

Query: 250 FAKGQY-EMLQKMRCLGFPVNNGVRQANTFHG-------IVSYYNEMKSIRSTLPYDIDG 301
           F    Y E L  +   GFPVN   R      G       I ++  + ++ R+TL Y IDG
Sbjct: 224 FPVATYTESLDLLIEWGFPVNP--RHERIPAGTPDRAERIRAFIEKERTERATLDYQIDG 281

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           LV+KV+E  ++ +LG     PRW I++KF   QA T L+ ID+Q+GRTG +TPVARL+PV
Sbjct: 282 LVFKVNELDVRDRLGYTGHHPRWAIAYKFEAPQAVTELVRIDVQVGRTGRVTPVARLKPV 341

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ I+N TLHNEDY++ L+ +            GD V + + G+VIP +  ++  E+
Sbjct: 342 ELSGSTISNVTLHNEDYVQALELAP-----------GDLVAISKRGDVIPAIEKVV--EK 388

Query: 422 HPDAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           + +  P +  P  CP C SR+ R           AH      +C A    RLK FVS   
Sbjct: 389 NEEGVPVWRMPEHCPECSSRLERR---------GAHHFCPNRSCPAVITGRLKFFVSPKQ 439

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I  LG + +DF  +     +  RIP D++T   R      ++ +  GFG+  +  +  
Sbjct: 440 MDIRVLGNETIDFLVEK---GYIRRIP-DLYTFDYR------RLLDEPGFGEKKINLIVQ 489

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            I + +       + +LGI  VG  +  +L +  ++  +   EI      +  D  +L R
Sbjct: 490 GIEESKRRPFSTVLVALGIPDVGPSVVETLIRGGITGIDRLLEIA-----DRGDVDALTR 544

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           +  +G+  A+ ++E  ++P     +E L K  +S    R E       E +    TG+ +
Sbjct: 545 LEGIGEKTARQLIETLRDPEWRKEIEELRKAGLSFEEERPEAVSGGPFEGQVWCVTGSFR 604

Query: 660 KIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               R +A+E ++ LG  V + +S KT  ++VG+NPGSKLEKA+ LGV+++ E+QF+ +L
Sbjct: 605 HFTPRSRAEELISSLGGRVVSSVSSKTTHLLVGENPGSKLEKARSLGVQLVTEDQFIEML 664

Query: 719 Q 719
           +
Sbjct: 665 K 665


>gi|170781460|ref|YP_001709792.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|190359244|sp|B0RGA7|DNLJ_CLAMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169156028|emb|CAQ01163.1| DNA ligase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 847

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 238/788 (30%), Positives = 375/788 (47%), Gaps = 105/788 (13%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E A   +  L  EI  H D YY  +   + D+EYDAL+R   AI  A P L RS+D   
Sbjct: 23  LEAASARVDELRAEIERHRDAYYGETGGTVSDAEYDALERELRAIEDAHPTL-RSQD--S 79

Query: 74  PLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P   +GG    +LF  VTH+   LSL+ +++ E+L ++  ++ R         + +  E 
Sbjct: 80  PTQTVGGRAETTLFAPVTHAERMLSLDNVFSEEELAEWAAKVER---DAGRGRVRYLSEL 136

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           KIDG  I +RYE G  V AA RGDG  GEDV+  +  + T+P R+     P ++EVRGE+
Sbjct: 137 KIDGLAINLRYEHGVLVTAATRGDGVVGEDVTQNVLTMGTVPERLAGSGHPPLVEVRGEI 196

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL----NPTDIT------RYLNFFVH 241
           +    +F  LN   + VG + +ANPRNAA+G LR+     +P  +       R L   VH
Sbjct: 197 FFPVAEFDELNARQLEVGERVFANPRNAAAGSLRQKEEGKSPARLELMHARIRRLRMLVH 256

Query: 242 GLGK------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           G+G         +     Q E+   +   G P++   R  +    +  +     + R+ +
Sbjct: 257 GIGAWPVRELERDAHVSAQSEVYGLLEAWGLPISTHFRVFDDIAEVAGFVRRQGADRAAV 316

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            + IDG+V KVD+  L ++LG  +R+PRW  ++K+  ++ +T LLDI + +GRTG  TP 
Sbjct: 317 EHQIDGIVVKVDDLGLHEELGATSRAPRWATAYKYPPEEVNTTLLDIVVSVGRTGRATPF 376

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A +E V + G+ +  ATLHN+  +K            + + +GD V++++AG+VIP+V+ 
Sbjct: 377 AVMEKVEVAGSEVRQATLHNQQVVK-----------AKGVLIGDTVVLRKAGDVIPEVLG 425

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKH 474
            +V  R      F  P+ CP CQ+     L P K G +    RC    +C AQ   R++H
Sbjct: 426 PVVELRTGKEHEFVMPTLCPECQT----PLKPAKEGDI--DLRCPNARSCPAQVRGRVEH 479

Query: 475 FVSRDAFNIEGLGK---QQLDFFFKSEDPAFSIRIPADIFTLQ-----------RRQQTS 520
             SR A +IEGLG+     L    + EDP       A +F L            R  +T 
Sbjct: 480 VASRGALDIEGLGEVAAAALTQPLEPEDPPLETE--AGLFELTMADLVPITVVVRDAETG 537

Query: 521 TTKIENILG-------------------------FGD------VSVTNLYDSINKRRNIS 549
             K++   G                         +GD       S   L +++ K +   
Sbjct: 538 MVKVDEKTGEAKRVTPFRRKRVLKRDGAFDPAEPWGDEASVPSKSAEVLLENLEKAKTQD 597

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA ++ S       ++ I A + ++   L  V  VG IIA
Sbjct: 598 LWRILVALSIRHVGPVAARALAGWFGS-------LDVIRAASREE---LAAVDGVGGIIA 647

Query: 610 QAIVEFYQNP--RNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQR 663
            A++++++    R I A       V+   G             +    +V TG+L+   R
Sbjct: 648 DALLDWFEVDWHREIVARWEKAGVVTAVPGHPGPGAAAAAGGVLAGLAVVATGSLEGYTR 707

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             A E +   G    + +S+KT  +  G   GSKL KA+ LGV+I++  +F  L++Q   
Sbjct: 708 EGALEAIMAAGGKAGSSVSKKTHYVAAGPGAGSKLGKAEALGVRIIDAAEFRLLVEQGPD 767

Query: 724 TLRIHDDD 731
            + + + D
Sbjct: 768 AIALPEAD 775


>gi|308182775|ref|YP_003926902.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4]
 gi|308064960|gb|ADO06852.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4]
          Length = 656

 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 233/701 (33%), Positives = 362/701 (51%), Gaps = 68/701 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY   + I+ D+ YD L +   A     P+   S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDESIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGATTTNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E  +QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELGIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA++T ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVTKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  +   R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEVEFLEM---EGFGAEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  +   ++  SS   +K +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDMTEEKQESSSVFNHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|188527537|ref|YP_001910224.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470]
 gi|254781347|sp|B2UTL2|DNLJ_HELPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188143777|gb|ACD48194.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470]
          Length = 656

 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 235/701 (33%), Positives = 363/701 (51%), Gaps = 68/701 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY     I+ D+ YD L +   A     P+   S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDSIVSDAVYDELYQELKAYEGKNPN---SIQANSPTQKVGATTPNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFISFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ I  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGIINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LA+Y L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  +   ++  SS   NK +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDMAEEKQESSSVFSNKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++++
Sbjct: 616 SAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656


>gi|237738042|ref|ZP_04568523.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817]
 gi|229419922|gb|EEO34969.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817]
          Length = 663

 Score =  327 bits (838), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 223/702 (31%), Positives = 373/702 (53%), Gaps = 56/702 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG-EM 82
           + ++I  + D YY  ++ +I D E+D L      +   +P+    ++ N P   +G   +
Sbjct: 1   MREKIKKYSDYYYTNNESLISDVEFDKLLVELKELEEKYPEY---KEKNSPTEIVGATSL 57

Query: 83  NLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
             + F KV H  P LSL   +N  D+  FI R+ +     ++ ++ + LE K+DG  ++I
Sbjct: 58  KETKFQKVAHKKPMLSLSNSYNEGDISDFIERVKKLLP--EEKNLAYALELKLDGLSLSI 115

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
           +YE+GK V A  RGDG  GEDV+  I  I +IP++L   +   IE+RGEV +  + F  L
Sbjct: 116 QYEEGKLVRAVTRGDGTVGEDVTENILEIESIPKILKEKVS--IEIRGEVVLPLSKFEEL 173

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           N + +  G + +ANPRNAA+G LR+L+ + I  R L+ + + L        K   E ++ 
Sbjct: 174 NKKRMENGEEVFANPRNAAAGTLRQLDSSIIKERGLDAYFYFLVDAQNYGVKTHSESIEY 233

Query: 261 MRCLGFP---VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +  LG     V   ++ ++     + Y+ E    R +L Y+ DG+V KVD   L  +LG 
Sbjct: 234 LAKLGIKTTGVCEVLKNSSELISRIEYWGEK---RESLDYETDGMVIKVDNIELWDKLGN 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             +SPRW I+ KF  KQ +T++L +  Q+GRTG +TPVA LE V + G+ +  A+LHN  
Sbjct: 291 TTKSPRWAIAFKFPAKQVTTKILGVTWQVGRTGKVTPVAELEEVELSGSRVKRASLHNYQ 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V +++A E+IP+VV  +   R  +      P+ CPIC
Sbjct: 351 EIE-----------RKDIRIGDSVFIEKAAEIIPQVVKAVKELRDGNEIIIKEPTHCPIC 399

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            ++V R+     G++    RC   ++C  +    L +FVSRDA NI G G + ++   + 
Sbjct: 400 NTKVERE----EGQV--DIRCP-NISCPGKIEGELIYFVSRDAMNIAGFGSKIVENMLR- 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
               F I+   DI+ L+  ++    ++E +   G  SV NL  +I   +     + + +L
Sbjct: 452 --LGF-IKNIVDIYELKNHRE----ELEKLEKMGKKSVDNLLTAIENSKTREYSKVLCAL 504

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI  VG   A+ LA       + +  I+ +++ + ++   L+ +  +GD +AQAI +F++
Sbjct: 505 GIPFVGKTSAKLLA-------DSSGNIDKLMSMSVEE---LMEIEGIGDKMAQAIFDFFR 554

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +      +E L       I   ++ + +E      K  +FTGTLQ   R++ +E + +LG
Sbjct: 555 DEEKKKLIEGLKAHGLTFIQERKEELPAEEKVFTGKTFLFTGTLQNFTRNEIKEEIEKLG 614

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFL 715
               + +S+  D +IVG+  GSKL+KAQ+LG VKI+ EE+F+
Sbjct: 615 GKNLSAVSKNLDYLIVGEKAGSKLKKAQELGTVKIITEEEFM 656


>gi|182625562|ref|ZP_02953333.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721]
 gi|177909250|gb|EDT71715.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721]
          Length = 662

 Score =  327 bits (838), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 220/710 (30%), Positives = 362/710 (50%), Gaps = 68/710 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74
           +K +  L +E++ +   YY      + D +YD  K+  + +     DL +      P  P
Sbjct: 4   KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128
             ++G  +     K TH     SL+K   +E++R++  R  +F ++ +  S      + +
Sbjct: 57  TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+
Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
            GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 175 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +
Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G 
Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D          + R G  +R+G  V V+R+ +VIP+++  +V E     +
Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               P  CP C + +V +           H  C   L C  Q ++ + HF  R+A NI G
Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K 
Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VG
Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           DI+A++I+EF++  R +  +  LL   V+P   + E  + S    K +V TGTL+   R 
Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             +E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F
Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658


>gi|224372650|ref|YP_002607022.1| NAD-dependent DNA ligase LigA [Nautilia profundicola AmH]
 gi|254781379|sp|B9L8R4|DNLJ_NAUPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|223589900|gb|ACM93636.1| DNA ligase, NAD-dependent [Nautilia profundicola AmH]
          Length = 656

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 215/707 (30%), Positives = 363/707 (51%), Gaps = 65/707 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K + +L++   Y    YY    P++ D EYD L    +      PD     DP  P  +
Sbjct: 9   KKAVDTLKKWAYY----YYVLDNPLVTDEEYDKLYHEVEEYEKKHPDKI---DPTSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K  H     S+E ++N +D   ++ R+ R    ++     F +EPK DG 
Sbjct: 62  VGDVVLEGFEKAKHLSRMWSMEDVFNEKDFLDWVGRVKRILGHEN---FSFYIEPKFDGA 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK + A  RGDG  GEDV+   + I +IP  L +    +IE+RGEV I K+D
Sbjct: 119 SLNLIYENGKLIRAETRGDGEIGEDVTLNAKTINSIP--LEIKEKSLIEIRGEVVIKKDD 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G   +ANPRNAA+G LR+L+P     R L F+  G+G  S  + +   E
Sbjct: 177 FDKLNEERLKNGEPTFANPRNAAAGSLRQLDPKITAKRPLIFYPWGVGVNSLNYERYS-E 235

Query: 257 MLQKMRCLGF--PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++  +  LGF  P   GV        +   Y+E   +R +    +DG+V K+DE      
Sbjct: 236 LMDYIYSLGFKEPPKRGV--CKDIPCVEKKYDEFVKLRDSFEVMLDGMVVKIDEIKYHDI 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   + PRWM+++KF   +  T + D+ +Q+GRTG+LTPVA L+PV IGG ++  ATLH
Sbjct: 294 LGYTQKYPRWMVAYKFPAIEKETIIEDVIVQVGRTGVLTPVAVLKPVEIGGVIVERATLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ +           DIR+GD V+V R+G+VIPK+  ++  +R  D +P   P+ C
Sbjct: 354 NFDEIERM-----------DIRIGDHVIVIRSGDVIPKITKVLTWKRKGDEKPIPRPTHC 402

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C + V+ +     G L+   +C   L+C A+ +  + +F S++  +IEGLG+      
Sbjct: 403 PVCGAEVLDE-----GALI---KCQ-NLSCPARVVNTIIYFASKNCLDIEGLGESVAKLL 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       ++   D+F L+         +E +  F      NL ++I  +  +   RF+
Sbjct: 454 YEHG----LVKDVTDLFELK------VEDLEKLPLFARKKAENLVNAIKSKVGVECWRFV 503

Query: 555 FSLGIRHVGAEIARSLA-KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
            +LGI H+G   ++ +  K+ + +   A E    I     +             + ++I 
Sbjct: 504 NALGIEHIGEVASKKICEKFGVEFYKHAPEEFEEIEGFGPE-------------MVKSIA 550

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           E+ +   N   +E L++ + P     ++   +    K +V TGT+ K  R + ++ +  +
Sbjct: 551 EYIR--VNKEKIEKLIEILKPKNPEKKEVQKTPFTGKTVVLTGTMSK-PRSEIKKMLEDM 607

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           GA VS+ +S+KTD +I G++ GSK +KA++LGV +++E+    +L++
Sbjct: 608 GAKVSSSVSKKTDFVIYGEDAGSKYDKAKKLGVNLLSEDDMWKMLKE 654


>gi|317012429|gb|ADU83037.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Lithuania75]
          Length = 656

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 230/699 (32%), Positives = 360/699 (51%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY   +PI+ D+ YD L +   A     P+  ++   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDEPIVSDAIYDELYQELKAYEEKNPNDIQA---NSPTQKVGATTTNSFS 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +         F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQNELQAWLQRILKAYPNAS-----FVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ +    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHFIAYDGE--IEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E  +QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELDIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+I  ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAIINRATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKVERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ +     I 
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LA+Y L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  +   ++  SS   NK +V TGTL K ++  AQ  +  LGA +++ +
Sbjct: 557 IRSLFELLNPKNSDMAEEKQESSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKIASSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +I G+NPGSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 616 STKTDFLIAGENPGSKLSLAQKHGVSVLNEEELLKHLKE 654


>gi|172040410|ref|YP_001800124.1| NAD-dependent DNA ligase LigA [Corynebacterium urealyticum DSM
           7109]
 gi|254781300|sp|B1VG01|DNLJ_CORU7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171851714|emb|CAQ04690.1| DNA ligase [Corynebacterium urealyticum DSM 7109]
          Length = 712

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 225/731 (30%), Positives = 355/731 (48%), Gaps = 73/731 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++ +  ++  SL  ++ +H + YY Y  P I D+E+DAL  R     ++ P+      P 
Sbjct: 22  ALAELAQQWQSLADQVRHHREVYY-YGNPEISDAEFDALLTRLQEFENSHPEAVTGPSPT 80

Query: 73  GPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             +     E   S F+ V H  P LSL+ +++ E L  ++ R           +  +  E
Sbjct: 81  TEVAPSPPES--SPFRNVDHQEPMLSLDNVFDTEQLSSWLDRT---------PAKTYLTE 129

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEV 187
            KIDG  I + Y  G    A  RGDG +GED++   R +  IP  L       +PEI+E+
Sbjct: 130 LKIDGASINLLYRNGVLELALTRGDGTTGEDITHNARTLSDIPARLQPSEDFPVPEIVEI 189

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKT 246
           RGEV+I   DF  +N +  A G+K +ANPRNAA+G +R+ +P +  R  L    HG+G  
Sbjct: 190 RGEVFIRVEDFAKMNAQRQAEGQKMFANPRNAAAGAMRQKDPAETARRPLRLICHGIGAR 249

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  Q+   + +   G PV+   +Q ++   ++         R    +++DGLV KV
Sbjct: 250 EGFTPASQHAAYEALAAWGLPVSPYTKQVHSAKEVLEQVAYWADHRHDADHEMDGLVIKV 309

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q++LG  +R+PRW I++K+  ++A TRL DI + IGRTG  TP A +EP  + G+
Sbjct: 310 DDTESQQRLGTTSRAPRWAIAYKYPPEEARTRLHDIRLGIGRTGRATPYAVMEPKYVAGS 369

Query: 367 LITNATLHN--EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
            +T ATLHN  E + KG             +R+GD +++++AGEVIP+V+  + + R+  
Sbjct: 370 TVTMATLHNPSEAHRKG-------------VRLGDEIMIRKAGEVIPEVLGPVEDARNGA 416

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            + F F S CP C +     L P  G   A  RC     C  Q   RL +   R AF+I+
Sbjct: 417 EREFLFSSLCPECGT----PLAPARGD-DADWRCPNTRYCPGQLHTRLTYIAGRGAFDID 471

Query: 485 GLG-KQQLDFFFKSEDPAFSIRIPADIFTLQ----RRQQTSTTKIENILGFGDVSVTNLY 539
            LG K   D       P  +      +F+L     RR    TTK   +   G+  +T L 
Sbjct: 472 ALGEKAAYDLIHSGVLPDET-----GLFSLTEEDLRRTDAYTTKSGALNKQGETLLTTLA 526

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE----------INNIIA 589
            +    + + L R I +L IRHVG   A++LA +Y S  + A            +  IIA
Sbjct: 527 AA----KEVDLWRVIVALSIRHVGPTAAKALANHYGSIPDVAAADVETMSTVDGVGPIIA 582

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
            +  DW ++     + D  A A V   Q+     + +A         G  + ++   +  
Sbjct: 583 ESVRDWFAVSWHQEIVDAWAAAGVRMEQDVTEQPSADA--------AGSIQADL---LAG 631

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
             +V TGTL+   R  A+E +   G   +  +S+KTD ++ G   GSKL KA++LG+ ++
Sbjct: 632 LSIVVTGTLEDFDRSSAKEAIESRGGKATGSVSKKTDYLVAGAKAGSKLTKAEELGIPVL 691

Query: 710 NEEQFLFLLQQ 720
           +E  F  LL +
Sbjct: 692 DEAGFHKLLSE 702


>gi|255658313|ref|ZP_05403722.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
 gi|260849632|gb|EEX69639.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
          Length = 675

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 222/711 (31%), Positives = 359/711 (50%), Gaps = 49/711 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SI+Q +KEL+ L + I YH++ YY    P I D EYD L  R  AI   +P+L      N
Sbjct: 9   SIQQVKKELTELRKTIRYHNNRYYNEDNPEISDYEYDQLMLRLKAIEAKYPELITK---N 65

Query: 73  GPLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P   +GG+   +    V H +P LSL+ +++ E++  F+  + +  +  +     F +E
Sbjct: 66  SPTQVVGGQARRTAGVLVKHDVPMLSLQDVFSKEEIFAFVEELQQELEAPE-----FVVE 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
            KIDG  + +RYE G+ V A  RGDG   GEDV+   + I  + + L   +P   E+RGE
Sbjct: 121 EKIDGLSMALRYEDGELVRAITRGDGIVQGEDVTENAKVIHDVKKKLKDKLP-YFEIRGE 179

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           VY+ K  F A+N     +G KP+ANPRN A+G LR+L+ + IT  R+L+ F+  L     
Sbjct: 180 VYMEKKAFDAVNARQELLGLKPFANPRNCAAGTLRQLD-SRITKERHLSLFIFNLQTARG 238

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E    M+  G  V +G +  +T   +      +   R  LPYDIDG V K++ 
Sbjct: 239 RTFTTHTEAYDFMKKQGIKVIHGYKVCHTADEVWQAITAIGENRGNLPYDIDGAVVKLNN 298

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + +++LG  A+ PRW I++K+  ++  T +  I++ +GRTG +TP A  +P+ + G  +
Sbjct: 299 LADREKLGATAKVPRWAIAYKYPPEEKETVIRKIELSVGRTGRITPTAVFDPIRLCGTTV 358

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN+D+I  L           D+R+GD V V ++GE+IPKV +++  +R    +PF
Sbjct: 359 ERATLHNQDFIDNL-----------DVRIGDTVRVYKSGEIIPKVKEVVKEKRPAGTEPF 407

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
              + CP+C +  VR+  P T  +    +C    +C AQ    + +FV R A +I+GLG+
Sbjct: 408 VIGTTCPVCGAPAVRE--PDTSDI----KCKNP-SCPAQLESHILNFVGRSAMDIKGLGE 460

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +    +     F   I AD++ L  +++    K   I+G  + +   +  +I   +  
Sbjct: 461 AAIHRLIED---GFIATI-ADLYRLGGKREELIEK--GIIG-KEKNTDKVLAAIEASKEN 513

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             +R +  LGI  +G   AR L  ++ S    A+     I    D          +G+I 
Sbjct: 514 EPQRLLTGLGIPGIGRTAARELMLHFGSIDALAKASEEEILEVRD----------MGEIS 563

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+AIV+++ +P +   + A               V  +   K  V TGTL  + R  A  
Sbjct: 564 AKAIVQYFNDPASQKILAAFRAAGVNFTLEDTGLVDEKFAGKTFVITGTLPSLSRKDAAA 623

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   G  V+  +S+KTD ++ G+  GSKL+KA  LG+ I++E     LL+
Sbjct: 624 LIESHGGRVAGSVSKKTDYLVAGEAAGSKLQKATDLGITILDEAGLQALLE 674


>gi|168205087|ref|ZP_02631092.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987]
 gi|170663244|gb|EDT15927.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987]
          Length = 662

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 220/710 (30%), Positives = 362/710 (50%), Gaps = 68/710 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74
           +K +  L +E++ +   YY      + D +YD  K+  + +     DL +      P  P
Sbjct: 4   KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128
             ++G  +     K TH     SL+K   +E++R++  R  +F ++ +  S      + +
Sbjct: 57  TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+
Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
            GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 175 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +
Sbjct: 231 EGAPFKTYMEMLNFIKVKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G 
Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D          + R G  +R+G  V V+R+ +VIP+++  +V E     +
Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               P  CP C + +V +           H  C   L C  Q ++ + HF  R+A NI G
Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K 
Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VG
Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           DI+A++I+EF++  R +  +  LL   V+P   + E  + S    K +V TGTL+   R 
Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             +E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F
Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658


>gi|256824829|ref|YP_003148789.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547]
 gi|256688222|gb|ACV06024.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547]
          Length = 770

 Score =  327 bits (837), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 224/760 (29%), Positives = 367/760 (48%), Gaps = 81/760 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R +   L + +  H   YY   +P I D+++DAL R  + +    P L     P  P
Sbjct: 37  EGVRHQWDDLARRVREHRFAYY-LGRPTISDADFDALFRELEQLESEHPGL---RTPESP 92

Query: 75  LNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G  +  + F  V H+   LSL+ +++ E+L  +  R        D   + +  E K
Sbjct: 93  TQEVGAPVFETGFDAVDHAERMLSLDNVFSSEELAAWFQRARDAAGTTD---LHYLCELK 149

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------------SLNI 181
           IDG  + + YE G  V AA RGDG +GED++  +R I  +P  L            ++++
Sbjct: 150 IDGLAVNLTYEDGVLVRAATRGDGRTGEDITLNVRTIQGVPHRLERPADLADDATATVDV 209

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFV 240
           P ++EVRGEV++    F  LN   +  G+  +ANPRNAA+G LR+ +P    +R L   V
Sbjct: 210 PPLVEVRGEVFLPLEKFAELNARQVEAGKAAFANPRNAAAGSLRQKDPRVTASRPLRMIV 269

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           HG+G         Q E  + +   G PV +  +  +T   I  Y       R    +++D
Sbjct: 270 HGIGAREGFDIARQSEAYEVLAGWGLPVTSHAKVLDTLEEIEQYVAYWGGHREGAEHELD 329

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+DE ++Q+QLG  +R+PRW I+ K+  ++ +T+LLDI + +GRTG +TP   +EP
Sbjct: 330 GIVIKIDEVTVQRQLGSTSRAPRWAIAWKYPPQEVTTKLLDIAVNVGRTGRVTPFGVMEP 389

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ ++ ATLHN         + +V R G  + +GD V++++AG+VIP+++  + + 
Sbjct: 390 VTVAGSTVSMATLHN---------AHEVQRKG--VLIGDTVVLRKAGDVIPEILGPVADL 438

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           R      F  P+ CP C +    +L P K G      RC    +C +Q  ERL     R 
Sbjct: 439 RDGSETAFVMPTHCPSCGT----ELAPAKEGD--KDIRCPNSRSCPSQLRERLFGLAGRG 492

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT----------------- 522
           AF+IE LG +           A  +   A +F L       T+                 
Sbjct: 493 AFDIESLGWEGAGALLD----AGVLTDEAGVFDLTAEDLLRTSLYTRAAKKAEAAAAEEG 548

Query: 523 KIENILGFGDV--------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
             E +L  G V            L D++ + +   L R + +L IRHVG   AR+LA ++
Sbjct: 549 DPEGVLPPGGVVDGRVLSAVGVRLLDNLQQVKEQPLWRVLVALSIRHVGPTAARALAGHF 608

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
            +       +  I A + ++   L  V  VG  IA+A+ E++    N    + +    + 
Sbjct: 609 AT-------MEAIRAASTEE---LAAVEGVGPTIAEAVTEWFGGEGNGWHRQIVDTWAAA 658

Query: 635 SI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
            +      ++++   +E   +V TG+L+   R +++E +   G   S  +S+KTD ++VG
Sbjct: 659 GVRMADERDESIERTLEGLTVVVTGSLEGWSRDESKEAILTRGGKASGSVSKKTDYVVVG 718

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
            N GSK  KA++LG+ I++EEQF  LL          +DD
Sbjct: 719 ANAGSKATKAEELGLPILSEEQFGELLATGRVEGVTPEDD 758


>gi|308061946|gb|ADO03834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Cuz20]
          Length = 656

 Score =  326 bits (836), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 232/701 (33%), Positives = 364/701 (51%), Gaps = 68/701 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY     I+ D+ YD L +   A     P+   S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDSIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGATTPNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFPSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++T ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAMVTKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LA+Y L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  + + ++  SS   +K +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDMAKEKQESSSVFNHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++++
Sbjct: 616 SAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656


>gi|237742800|ref|ZP_04573281.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13]
 gi|229430448|gb|EEO40660.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13]
          Length = 696

 Score =  326 bits (836), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 224/721 (31%), Positives = 380/721 (52%), Gaps = 64/721 (8%)

Query: 19  KELSSLEQEISYHDD------CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +EL+ LE+ +   +D       YY  +  +I D E+D L +  +++   +P   + ++ +
Sbjct: 23  QELNDLEKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYP---QYKEIS 79

Query: 73  GPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P   +G  +  + FK V H+ P LSL   +NI ++  FI RI +   K  +  + + LE
Sbjct: 80  SPTTSVGASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPK--EQELKYCLE 137

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV
Sbjct: 138 VKLDGLSISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAID--MEIRGEV 195

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            +    F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++ 
Sbjct: 196 VLPLASFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLG 255

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E ++ +  +G           T   I    N  +  R  LPY+ DGLV KVDE  
Sbjct: 256 LKSHSESIKFLESMGIKTTGIFELLETSKEIEMRINYWEKERENLPYETDGLVIKVDEIH 315

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L  ++G  +++PRW I++KF   Q ST L D+  Q+GRTG LTPVA  + V + G+ +  
Sbjct: 316 LWDEIGYTSKAPRWAIAYKFPALQISTVLNDVAWQVGRTGKLTPVALFKEVELAGSKVER 375

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN   I+            +DIR+GDRV +K+A E+IP+VV  I  +R  + +    
Sbjct: 376 ASLHNISEIQ-----------KKDIRIGDRVFIKKAAEIIPQVVKAIKEDRTGNEKIIKE 424

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C  ++ R+        +   +C     C  +    +++FVS+DA NI GLG + 
Sbjct: 425 PTHCPVCNHKLEREEG------LVDIKCVNE-ECPGKNQAEIEYFVSKDALNIMGLGSKI 477

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F    D  + I+   DIF L+  ++     +ENI   G+ S+ NL +SI + +N   
Sbjct: 478 VEKFI---DLGY-IKTVVDIFDLKNHKED----LENIDKMGERSIENLLNSIEESKNRDY 529

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ I SLG+  +G   +++LAK        ++ I+ ++  + ++   L  +  +G   A 
Sbjct: 530 DKVICSLGMPLIGKVASKALAKA-------SKNIDKLMTMSFEE---LTSIDGIGKKAAN 579

Query: 611 AIVEFYQNPRNICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            I+ F+   +N   ++ L        +KE   ++    +N++     K  +FTGTL+   
Sbjct: 580 EIIAFFTKEKNQKIIQGLKEKGLKFEIKESETNV----QNINPNFAGKNFLFTGTLKHFT 635

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQY 721
           R + +E + +LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  ++
Sbjct: 636 REQIKEEIEKLGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKF 695

Query: 722 N 722
           +
Sbjct: 696 D 696


>gi|166215590|sp|Q8XI62|DNLJ_CLOPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 662

 Score =  326 bits (836), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 220/710 (30%), Positives = 361/710 (50%), Gaps = 68/710 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74
           +K +  L +E++ +   YY      + D +YD  K+  + +     DL +      P  P
Sbjct: 4   KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128
             ++G  +     K TH     SL+K   +E++R++  R  +F ++ +  S      + +
Sbjct: 57  TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+
Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
            GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 175 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +
Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   +  LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G 
Sbjct: 291 DDIRTRDLLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D          + R G  +R+G  V V+R+ +VIP+++  +V E     +
Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               P  CP C + +V +           H  C   L C  Q ++ + HF  R+A NI G
Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K 
Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VG
Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           DI+A++I+EF++  R +  +  LL   V+P   + E  + S    K +V TGTL+   R 
Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             +E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F
Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658


>gi|110801053|ref|YP_696931.1| NAD-dependent DNA ligase LigA [Clostridium perfringens ATCC 13124]
 gi|123049624|sp|Q0TN59|DNLJ_CLOP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110675700|gb|ABG84687.1| DNA ligase, NAD-dependent [Clostridium perfringens ATCC 13124]
          Length = 662

 Score =  326 bits (836), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 220/710 (30%), Positives = 362/710 (50%), Gaps = 68/710 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74
           +K +  L +E++ +   YY      + D +YD  K+  + +     DL +      P  P
Sbjct: 4   KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128
             ++G  +     K TH     SL+K   +E++R++  R  +F ++ +  S      + +
Sbjct: 57  TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+
Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
            GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 175 HGEAIMTTEAFEKYNSE----ADTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +
Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G 
Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D          + R G  +R+G  V V+R+ +VIP+++  +V E     +
Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               P  CP C + +V +           H  C   L C  Q ++ + HF  R+A NI G
Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K 
Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VG
Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           DI+A++I+EF++  R +  +  LL   V+P   + E  + S    K +V TGTL+   R 
Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             +E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F
Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658


>gi|18311241|ref|NP_563175.1| NAD-dependent DNA ligase LigA [Clostridium perfringens str. 13]
 gi|18145924|dbj|BAB81965.1| DNA ligase [Clostridium perfringens str. 13]
          Length = 665

 Score =  326 bits (836), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 220/710 (30%), Positives = 361/710 (50%), Gaps = 68/710 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74
           +K +  L +E++ +   YY      + D +YD  K+  + +     DL +      P  P
Sbjct: 7   KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128
             ++G  +     K TH     SL+K   +E++R++  R  +F ++ +  S      + +
Sbjct: 60  TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 119

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+
Sbjct: 120 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 177

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
            GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 178 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 233

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +
Sbjct: 234 EGAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 293

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   +  LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G 
Sbjct: 294 DDIRTRDLLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 353

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D          + R G  +R+G  V V+R+ +VIP+++  +V E     +
Sbjct: 354 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               P  CP C + +V +           H  C   L C  Q ++ + HF  R+A NI G
Sbjct: 402 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 452

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K 
Sbjct: 453 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 502

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VG
Sbjct: 503 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 552

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           DI+A++I+EF++  R +  +  LL   V+P   + E  + S    K +V TGTL+   R 
Sbjct: 553 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 611

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             +E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F
Sbjct: 612 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 661


>gi|207092489|ref|ZP_03240276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_AG0C1]
          Length = 656

 Score =  326 bits (835), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 232/699 (33%), Positives = 361/699 (51%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P+   S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGAITTNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE V+   + I  IP  ++ N  E IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVSATTRGNGLEGELVTNNAKHIANIPHSIAYN--EEIEIRGEVIISKKDFDALNQERLD 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SNITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E  +QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELGIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA++T ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVTKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LA+Y L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  +   ++  SS   NK +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDMTEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQT-LENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +I G+NPGSKL  A++ GV ++NEE+ L  L++
Sbjct: 616 SAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKE 654


>gi|15611625|ref|NP_223276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori J99]
 gi|7674020|sp|Q9ZLM1|DNLJ_HELPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4155109|gb|AAD06141.1| DNA LIGASE [Helicobacter pylori J99]
          Length = 656

 Score =  326 bits (835), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 230/699 (32%), Positives = 358/699 (51%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY   +PI+ D+ YD L +   A     P+  ++   N P  K+G        
Sbjct: 18  LSHH---YYNLDEPIVSDAVYDELYQELKAYEEENPNRIQA---NSPTQKVGATATNEFS 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +LR ++ RI + +         F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQNELRAWLQRILKVYPNAS-----FVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            + A  RG+G  GE V+   + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LISATTRGNGLEGELVTNNAKHIANIPHSIAYNGE--IEIRGEVIISKEDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F + + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SNITKKRKLQFIPWGVGKHSLHFLRFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  VDE  +QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVDELDIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++  ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R    Q    P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMRPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A ++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMAHSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   S      ++  SS   +K +V TGTL K ++  AQ  +  LGA +++ +
Sbjct: 557 IRSLFELLNPKSSDTAEEKQKSSSVFSDKTIVLTGTLSKPRQEYAQ-MLENLGAKIASSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +I G+N GSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 616 SAKTDFLIAGENAGSKLALAQKHGVSVLNEEELLKRLKE 654


>gi|168213168|ref|ZP_02638793.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969]
 gi|170715278|gb|EDT27460.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969]
          Length = 662

 Score =  326 bits (835), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 220/710 (30%), Positives = 362/710 (50%), Gaps = 68/710 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74
           +K +  L +E++ +   YY      + D +YD  K+  + +     DL +      P  P
Sbjct: 4   KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128
             ++G  +     K TH     SL+K   +E++R++  R  +F ++ +  S      + +
Sbjct: 57  TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNIKFLEEYNRTSDEELPPLKY 116

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+
Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
            GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 175 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +
Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G 
Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D          + R G  +R+G  V V+R+ +VIP+++  +V E     +
Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               P  CP C + +V +           H  C   L C  Q ++ + HF  R+A NI G
Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K 
Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VG
Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           DI+A++I+EF++  R +  +  LL   V+P   + E  + S    K +V TGTL+   R 
Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             +E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F
Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658


>gi|169347054|ref|ZP_02865996.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495]
 gi|169296737|gb|EDS78866.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495]
          Length = 662

 Score =  326 bits (835), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 219/710 (30%), Positives = 359/710 (50%), Gaps = 68/710 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74
           +K +  L +E++ +   YY      + D +YD          +   DL +      P  P
Sbjct: 4   KKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKK-------YYELLDLEKETGYKLPYSP 56

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128
             ++G  +     K TH     SL+K   +E++R++  R  +F ++ +  S      + +
Sbjct: 57  TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+
Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
            GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 175 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +
Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G 
Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D          + R G  +R+G  V V+R+ +VIP+++  +V E     +
Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               P  CP C + +V +           H  C   L C  Q ++ + HF  R+A NI G
Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K 
Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VG
Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           DI+A++I+EF++  R +  +  LL   V+P   + E  + S    K +V TGTL+   R 
Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESLFMGKTVVVTGTLENYSRT 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             +E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F
Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658


>gi|168211265|ref|ZP_02636890.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC
           3626]
 gi|170710700|gb|EDT22882.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC
           3626]
          Length = 662

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 220/710 (30%), Positives = 362/710 (50%), Gaps = 68/710 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74
           +K +  L +E++ +   YY      + D +YD  K+  + +     DL +      P  P
Sbjct: 4   KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128
             ++G  +     K TH     SL+K   +E++R++  R  +F ++ +  S      + +
Sbjct: 57  TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+
Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
            GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 175 HGEAIMTTEAFEKYNSE----ADTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +
Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRKCTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G 
Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D          + R G  +R+G  V V+R+ +VIP+++  +V E     +
Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               P  CP C + +V +           H  C   L C  Q ++ + HF  R+A NI G
Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K 
Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VG
Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           DI+A++I+EF++  R +  +  LL   V+P   + E  + S    K +V TGTL+   R 
Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             +E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F
Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658


>gi|317179023|dbj|BAJ56811.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F30]
          Length = 657

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 234/699 (33%), Positives = 362/699 (51%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P+   S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDPIVSDAIYDELYQELKAYEEKNPN---SIQANSPTQKVGATTTNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVSANAKRIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHALIREREGFFVLLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LA+Y L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  + + ++  SS   +K +V TG L K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDMTKEKQKSSSVFSHKTIVLTGMLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 616 STKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKE 654


>gi|148272584|ref|YP_001222145.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166215575|sp|A5CQU5|DNLJ_CLAM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147830514|emb|CAN01449.1| NAD-dependant DNA ligase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 853

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 234/777 (30%), Positives = 377/777 (48%), Gaps = 105/777 (13%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E A   + +L  EI  H D YY      + D+EYDAL    +A+  A P L RS+D   
Sbjct: 23  LEAASARVDALRTEIERHRDEYYGADASTLSDAEYDALVHELEALEEAHPTL-RSQD--S 79

Query: 74  PLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P   +GG    +LF  VTH+   LSL+ +++ E+L ++  ++ R         + +  E 
Sbjct: 80  PTQTVGGRAETTLFAPVTHAERMLSLDNVFSEEELAEWAAKVER---DAGSGRVRYLSEL 136

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           KIDG  I +RYE G  V AA RGDG  GEDV+  +  + T+P R++    P ++EVRGE+
Sbjct: 137 KIDGLAINLRYEHGVLVTAATRGDGVVGEDVTQNVLTMGTVPERLMGSGHPPLVEVRGEI 196

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL----NPTDIT------RYLNFFVH 241
           +    +F  LN   + VG + +ANPRNAA+G LR+     +P  +       R L   VH
Sbjct: 197 FFPVAEFDELNARQLEVGERVFANPRNAAAGSLRQKEEGKSPARLELMRARIRRLRMLVH 256

Query: 242 GLGK------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           G+G        S+     Q E+   +   G P++   R  +    +  +     + R+ +
Sbjct: 257 GIGAWPVRELASDAHVSAQSEVYGLLAGWGLPISTHFRVFDDISEVTEFVRRHGAHRAEV 316

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            + IDG+V KVD+  L ++LG  +R+PRW  ++K+  ++ +T LLDI + +GRTG  TP 
Sbjct: 317 EHQIDGIVVKVDDLGLHEELGATSRAPRWATAYKYPPEEVNTTLLDIVVSVGRTGRATPF 376

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A +E V + G+ +  ATLHN+  +K            + + +GD V++++AG+VIP+V+ 
Sbjct: 377 AVMEKVEVAGSEVRQATLHNQQVVK-----------AKGVLIGDTVVLRKAGDVIPEVLG 425

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKH 474
            +V  R    + F  P+ CP CQ+     L P K G +    RC    +C AQ   R++H
Sbjct: 426 PVVELRDGTEREFVMPTLCPECQT----PLRPAKEGDI--DLRCPNARSCPAQVRGRVEH 479

Query: 475 FVSRDAFNIEGLGK---QQLDFFFKSEDPAFSIRIPADIFTLQ-----------RRQQTS 520
             SR A +IEGLG+     L    + EDP       A +F L            R  +T 
Sbjct: 480 VASRGALDIEGLGEVAAAALTQPLEPEDPPLETE--AGLFELTMADLVPITVVVRDAETG 537

Query: 521 TTKIENILG-------------------------FGD------VSVTNLYDSINKRRNIS 549
             K++   G                         +GD       S   L ++++K +   
Sbjct: 538 MVKVDEKTGEAKRVTPFRRRRAPKRDGVFDPAAPWGDEDSVPSKSAEVLLENLDKAKTQD 597

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA ++ S       ++ I + + ++   L  V  VG IIA
Sbjct: 598 LWRILVALSIRHVGPVAARALAGWFGS-------LDAIRSASREE---LAAVDGVGGIIA 647

Query: 610 QAIVEFYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENK-KLVFTGTLQKIQR 663
            A++++++   +   V+      ++ EV    G      +  +     +V TG+L+   R
Sbjct: 648 DALLDWFEVDWHREIVDRWRKAGVVMEVPGHPGPGAAAAAGGVLAGLTVVATGSLEGYTR 707

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             A E +   G    + +S+KT  +  G   GSKL KA+ LGV+I++  +F  L++Q
Sbjct: 708 EGALEAIMAAGGKAGSSVSKKTHYVAAGPGAGSKLGKAEALGVRIIDAAEFRLLVEQ 764


>gi|26553637|ref|NP_757571.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2]
 gi|81748016|sp|Q8EWL9|DNLJ_MYCPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|26453643|dbj|BAC43975.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2]
          Length = 701

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 220/720 (30%), Positives = 377/720 (52%), Gaps = 78/720 (10%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           + +L + ++ ++  YY    P + D EYD   +    +   +P+    + PN P  K+GG
Sbjct: 26  IQNLRKNLNQYNYEYYGLENPSVSDYEYDMCLKELIQLETQYPEF---DSPNSPSKKVGG 82

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            ++    KV H IP +SL   ++ EDL KF   I +     D     + +EPKIDG  I+
Sbjct: 83  YISEKFNKVKHEIPMMSLSNAFDEEDLLKFDNDIKKAIGSSD---FSYVVEPKIDGLSIS 139

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           ++Y+ G  + A  RGDG  GEDV+  I+ I ++P  L++   + +E+RGEV+++K DF  
Sbjct: 140 VKYKDGNLIQAVTRGDGEIGEDVTQNIKTIKSLP--LNIEYDKDLEIRGEVFLTKKDFEK 197

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEML 258
           +N +      K +AN RNAASG LR L+ ++IT  R L+   + + K +E+    QY++L
Sbjct: 198 INSDPNLT--KKFANARNAASGSLRNLD-SNITAKRNLSALFYYVPKATELKIAKQYDVL 254

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             +     P++  +R  N   G++   +E+   R    YDIDG+V KV++F+  +++G  
Sbjct: 255 SWLDKQLIPISREIRHCNNIQGVIERISELTDTRDQFKYDIDGIVIKVNDFNHYEEIGYT 314

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           ++ P+W I++KF      T+L  ID+ +GRTG +  +A L+ + + G+ +  ATLHN DY
Sbjct: 315 SKFPKWAIAYKFPAVVKQTKLNSIDVTVGRTGRINYIANLDEILLEGSQVKKATLHNYDY 374

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           IK             +I + D V + +AGE+IPK++  I  +R      F  P+ CP C 
Sbjct: 375 IK-----------DHEIMLNDIVEIYKAGEIIPKIIRSIKEKRDGSQVVFPEPTNCPSCD 423

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S++V+       K            C  +Q++++++F SRDA NIEGL    +   F+++
Sbjct: 424 SKLVK-------KEQEVDLYCLNENCVEKQIQQIEYFSSRDAMNIEGLSISIISQLFRNK 476

Query: 499 DPAFSIRIPADIFTLQRRQQT---------------STTKIENILGFGDVSVTNLYDSIN 543
                I    D++ L  +++                + T+ E  L F D S TN+ ++I 
Sbjct: 477 ----IINDAIDLYELAHKKEILIATKQKFYRKNDDGTKTEFERSL-FKDKSFTNIIEAIE 531

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K ++ S+E+F+  LGI++VG   A++L+K + S +  A      I           +VP 
Sbjct: 532 KSKSNSMEKFLTGLGIKYVGLRAAKALSKRFKSIEELAMATREEIE----------QVPD 581

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHE-------KNVSSEIENKKLV 653
            G+ +++++V ++ +P+N    + LL   K+V  +            KN   +  NK  V
Sbjct: 582 TGEKMSESLVNWFSDPKN----QDLLWRAKKVGINFNYINEFNDVVVKNEHQKYMNKTFV 637

Query: 654 FTGTLQKIQRHKAQEYVTQL-GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711
            TG+  K  R++ + Y+  +  A VS  +S+KTD ++VG+N G SKL+KA  L ++I+ E
Sbjct: 638 ITGSFNK-SRNEIKNYIESVFNAKVSDSVSKKTDYLVVGENAGDSKLKKANDLKIEIITE 696


>gi|84498237|ref|ZP_00997034.1| DNA ligase [Janibacter sp. HTCC2649]
 gi|84381737|gb|EAP97620.1| DNA ligase [Janibacter sp. HTCC2649]
          Length = 731

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 229/733 (31%), Positives = 373/733 (50%), Gaps = 72/733 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++ R E + L ++ + H   Y+    P + D EYD L +R + +   +P L     P  P
Sbjct: 31  DEIRHEWTDLAEQATTHQFAYHVKDSPTVSDGEYDKLMKRLNMLEDEYPSL---RTPESP 87

Query: 75  LNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL-EP 132
              +GG +  + F+ V H    LSL+  ++ E++ ++  R+ R     D  S F  L E 
Sbjct: 88  TQSVGGAVFSTDFESVDHLERMLSLDNAFSPEEMVEWNARVTR-----DAGSAFHYLCEL 142

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVR 188
           KIDG  I + YEKG+   A  RGDG +GEDV+  +R +  IP  L       +P+++EVR
Sbjct: 143 KIDGLAINLLYEKGRLTRALTRGDGRTGEDVTLNVRTVRGIPTELKGTKKHPVPDLVEVR 202

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY     F  LN +++  G+ PYANPRN A+G LR+ +P    +R L   VHG+GK  
Sbjct: 203 GEVYFPIEAFGELNAQLVEAGKPPYANPRNTAAGSLRQRDPRVTASRELRMLVHGIGKRE 262

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q E    ++  G PV+   R  +T   +  +       R  + ++IDG+V KVD
Sbjct: 263 GFALTRQSEAYAALQEWGMPVSTHFRVVDTIEEVNEFIVSTGEHRHDVEHEIDGVVVKVD 322

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E  +Q+QLG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   ++PV + G+ 
Sbjct: 323 EIVVQRQLGATSRAPRWAIAYKYPPEEVNTVLLDIQVNVGRTGRVTPFGVMKPVVVAGST 382

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN         + +V R G  + +GD +++++AG+VIP+++  +V+ R    + 
Sbjct: 383 VERATLHN---------ATEVTRKG--VLIGDTIVLRKAGDVIPEILGPVVDLRDGSERA 431

Query: 428 FSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           F  P  CP C +     L P K G      RC    +C +Q  ERL     R AF+IE L
Sbjct: 432 FVMPVDCPSCGT----PLAPAKEGD--KDIRCPNSRSCPSQLRERLSGLAGRGAFDIEAL 485

Query: 487 GKQQLDFFFKS-----EDPAFSI------RIPADIFTLQRRQQTST-----TKIENILGF 530
           G +      +S     E   F +      R+P  ++T   ++  S       ++ + +G 
Sbjct: 486 GWEGSVALLESGVLTDESTLFGLTDADIARVP--LYTRAAKKTDSEDAVIDGRVPSAIG- 542

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
                  L  ++   +   L R +  L IRHVG   AR+LA+++ S       ++ I A 
Sbjct: 543 -----AKLVANLESAKTQPLWRVLVGLSIRHVGPTAARALAQHFGS-------MDGIRAA 590

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
             ++   L  V  VG IIA+++ +++    N   V A++ + +    R E    + IE  
Sbjct: 591 TVEE---LSGVEGVGGIIAESVRDWFDREGNEWHV-AIVDQWAADGVRMEDERDTSIEQT 646

Query: 651 ----KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
                +V TG+++   R +A+E +   G   S  +S+KTD ++VG   GSK  KA++LG+
Sbjct: 647 LEGLTVVVTGSMEGFTRDEAKEAILSRGGKASGSVSKKTDYVVVGPGAGSKEAKARELGL 706

Query: 707 KIMNEEQFLFLLQ 719
            I++E  F+ LL+
Sbjct: 707 TILDEAGFVTLLE 719


>gi|311744048|ref|ZP_07717854.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272]
 gi|311313178|gb|EFQ83089.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272]
          Length = 782

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 241/803 (30%), Positives = 382/803 (47%), Gaps = 133/803 (16%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++AR E+++L + I+   + YY     ++ D+ YD   R+ +A+    P+L   + P  
Sbjct: 13  LDEARAEVTTLLERIAEAREAYYGQDASLVDDATYDGWLRQLEAVERRHPELQGQDSPT- 71

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
            LN +G      L  V H+   LSL+ ++  ++LR + T+      +     + +  E K
Sbjct: 72  -LN-VGAATTTDLAPVVHAERMLSLDNVFGADELRAWCTKT----TEAAGRPVRWLTEAK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  +++RYE G+ V AA RGDG  GEDV++    +  +PR L     P ++EVRGEV+
Sbjct: 126 IDGLAVSLRYEHGRLVSAATRGDGRVGEDVTSNAARLAGVPRELDGEGHPALVEVRGEVF 185

Query: 193 ISKNDFLALND-----------------------EMIAVGRKP-YANPRNAASGILRRLN 228
           I+   F  LN                        E  A  R P +ANPRNAA+G LR+L 
Sbjct: 186 IAVEAFRRLNALQADLRERVVADATARGQETGRAEASAARRFPAFANPRNAAAGGLRQLL 245

Query: 229 P--------TDITRY--LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278
                      + R   L+ +VHG+G   +     Q E+   +   G PV+   R  +  
Sbjct: 246 SKKDGLELEAGLARIESLSLYVHGIGAWDDPPVAAQSEVYDLLASWGLPVSPHGRVLDGV 305

Query: 279 HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTR 338
             +V    E+ + R+ + ++IDG+V KVDE +L  +LGE +R+PRW I++K+  ++  TR
Sbjct: 306 DEVVDRIAELGTGRAAIEHEIDGVVVKVDELALHPELGETSRAPRWAIAYKYPPEEVHTR 365

Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398
           LLDI + +GRTG  TP A +EPV++ G+++  ATLHN+D ++            + + +G
Sbjct: 366 LLDIVVSVGRTGRATPFAMMEPVHVAGSVVRQATLHNQDVVR-----------EKGVLIG 414

Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHR 457
           D V++++AG+VIP+V+  +   R      F  P+ CP C +     L P K G +    R
Sbjct: 415 DTVVLRKAGDVIPEVLGPVAELRDGSEVEFVMPTRCPECDTA----LRPMKEGDI--DLR 468

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQ-- 514
           C     C AQ   R++H  SR A +IE LG+       + E PA   +R  A +F L   
Sbjct: 469 CPNARTCPAQVRGRVEHVGSRGALDIEALGEVTAAALTQPEVPAEPPLRTEAALFELDLA 528

Query: 515 ---------RRQQTSTTKIENIL------------------GFGDVSVT----------- 536
                    R  +T   +I+                     GF D S             
Sbjct: 529 TLVPIEVVVRDAETGQPRIDPTTGEPVRRRPFQRVETTYPPGFEDASAAERRAAGVRKDH 588

Query: 537 ----------NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                      L + ++K R   L RF+ +L IRHVG   AR+LA+++ S       +  
Sbjct: 589 RTILPSAQALTLLEELDKARTKELWRFLVALSIRHVGPVAARALAQHFGS-------VRA 641

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK----EVSPSIGRHEKN 642
           I A   D+   L  V  VG  IA ++ ++     +   VE L +     V   I  H   
Sbjct: 642 IEAAGEDE---LAVVDGVGPTIAGSVKDWLTVDWH---VEILRRWEAAGVRLHIPDHPGP 695

Query: 643 VSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
            +++ E   L     V TG+L+   R   +E +   G   +  +S+KTD ++VG+N GSK
Sbjct: 696 GAADAEPGPLSGLTIVVTGSLEGFTRDSVKEAILVRGGKAAGSVSKKTDYVVVGENAGSK 755

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQ 720
            EKA+QLG+ I++E  F+ LL +
Sbjct: 756 AEKAEQLGIPILDEAGFVELLDR 778


>gi|298736308|ref|YP_003728834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8]
 gi|298355498|emb|CBI66370.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8]
          Length = 656

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 230/699 (32%), Positives = 359/699 (51%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P+   S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGAITTNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNSHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE V+   + I  IP  ++ +    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVTNNAKHIANIPHFIAYDGE--IEIRGEVIISKKDFDALNQERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  VDE  +QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVDELDIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA+I  ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMINRATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ +     I 
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LA+Y L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  +   ++  SS   NK +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +I G+NPGSKL  A++ GV ++NEE+ L  L++
Sbjct: 616 SAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKE 654


>gi|325295048|ref|YP_004281562.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065496|gb|ADY73503.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 723

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 228/731 (31%), Positives = 378/731 (51%), Gaps = 75/731 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED- 70
           LS E+A++    L + I YHD  YY  + P+I D +YD L        HA  DL +    
Sbjct: 32  LSTEEAKELAEKLRKVIRYHDYKYYVLASPVISDYQYDKL-------FHALEDLEKVHSE 84

Query: 71  ---PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  +I         KV H     SLE  ++ EDL+++  ++ +   +++   + 
Sbjct: 85  IITPDSPTQRIAPAFTGEFEKVKHLAEMTSLENTYSPEDLKEWDRKVKQLLGREE---VE 141

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP----- 182
           + +EPK DG  + + YE      A  RGDG  GED++  +R I +IP    L  P     
Sbjct: 142 YIVEPKFDGASVELVYEDDLLKRAVTRGDGVIGEDITMNVRTIKSIP----LKAPFSRYG 197

Query: 183 -EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-----YL 236
             +I +RGE+ + K+ F  LN E    G   +ANPRNAA+G LR  NP+++ +     Y 
Sbjct: 198 INLISIRGEIVMPKSVFEKLNKEREKQGLPLFANPRNAAAGTLRLKNPSEVAKRGLDCYA 257

Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
              ++  GK      K Q E L+ +   GF      +       ++    + +  R +  
Sbjct: 258 YQILYSEGKRLCDDIKTQSEALKLLAHCGFKSPRIQKVCKNIDEVIETVLQAQEERESWD 317

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           ++ DG+V KV++      LGE    P+W +++KF  KQA T+L+D+  Q+GRTG LTPVA
Sbjct: 318 FEADGMVVKVNDICAWNVLGETMHHPKWAVAYKFPAKQAVTKLVDVVWQVGRTGALTPVA 377

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            LEPV +GG +++ A+L N D+IK            +DIR+ D V+V+RAGE IP +V  
Sbjct: 378 VLEPVEVGGVVVSRASLFNPDFIK-----------QKDIRIFDYVIVERAGETIPYIVAP 426

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           I + R    +    P+ CP+C++ +V++L+       A  RC   + C AQ  E L ++ 
Sbjct: 427 IKDRRSGKEKLVEVPTHCPVCKAPIVKELDE------AVPRCP-NINCPAQLKEHLVYW- 478

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
                +I+GLG+   +   K+E     ++  AD++ L +        +  + G+G     
Sbjct: 479 -GKVLDIKGLGESTANILLKNE----LVKSIADLYYLNK------FDLIKLPGWGLKKAE 527

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL   I K ++ +  + + +LGIRHVG + A+ LA+ +       ++IN ++   N  + 
Sbjct: 528 NLLKQIEKSKSATFWKKLTALGIRHVGEKTAQFLAQKF-------KDINELM---NASFS 577

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKK 651
            L  +  +G I A +I  F++  +NI  ++  L+E      R      E+ +   +E + 
Sbjct: 578 ELASIQGIGAITATSIRNFFKAKQNIEMIKR-LEETGFYFRRTEEEEKEQKLPKPLEGQN 636

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +VFTG L+   R +AQ  V+ LG   +  +++KT  ++VG+NPGSK  KAQ+LG+K++NE
Sbjct: 637 IVFTGELEHFTRKEAQYLVSLLGGNPTNSVTKKTSFVVVGENPGSKFAKAQKLGIKLLNE 696

Query: 712 EQFLFLLQQYN 722
           E+FL L+++++
Sbjct: 697 EEFLKLIKKFS 707


>gi|260495084|ref|ZP_05815213.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33]
 gi|260197527|gb|EEW95045.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33]
          Length = 696

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 224/722 (31%), Positives = 385/722 (53%), Gaps = 62/722 (8%)

Query: 17  ARKELSSLEQEISYHDD------CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           + +EL+ LE+ +   +D       YY  +  +I D E+D L +  +++   +P   + ++
Sbjct: 21  SSQELNDLEKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYP---QYKE 77

Query: 71  PNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            + P   +G  +  + FK V H  P LSL   +NI ++  FI RI +   K+ +  + + 
Sbjct: 78  ISSPTTSVGASLKENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISKEQE--LKYC 135

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           LE K+DG  I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   +   +E+RG
Sbjct: 136 LEVKLDGLSISLTYRQGKLVRAVTRGDGLIGEDVTENILEITSIVKTLPQAMD--MEIRG 193

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EV +    F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  +
Sbjct: 194 EVVLPLASFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADK 253

Query: 249 IFAKGQYE---MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           +  K   E    L+ MR     +   +  +      + Y+ +    R  LPY+ DGLV K
Sbjct: 254 LGFKSHSESIKFLESMRIKTTGIFELLETSKEIEKRIDYWEKE---RENLPYETDGLVIK 310

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VDE +L  ++G  +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G
Sbjct: 311 VDEINLWNEIGYTSKTPRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSG 370

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  A+LHN   I+            +DIR+GDRV +++A E+IP+VV  I  +R  + 
Sbjct: 371 SKVKRASLHNISEIQ-----------RKDIRIGDRVFIEKAAEIIPQVVKSIKEDRTGNE 419

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP+C  ++ R+      + +   +C     C A+    +++FVSRDA NI G
Sbjct: 420 KIIEEPVNCPVCNHKLERE------EGLVDIKCVNE-ECPAKVQGEIEYFVSRDALNIMG 472

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++ F    D  + I+   DI+ L+  +++    +ENI   G  S+ NL +SI + 
Sbjct: 473 LGSKIVEKFI---DLGY-IKTVVDIYDLKNHRES----LENIDKMGKKSIENLLNSIEES 524

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N   ++ I++LGI  +G   ++ LAK        ++ I+ ++    ++   L  +  +G
Sbjct: 525 KNRDYDKVIYALGIAEIGKVTSKILAKA-------SKNIDKLMTMTFEE---LTSIDGIG 574

Query: 606 DIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           +I A  I+ F++  +N   ++ L    LK        + +N++     K  +FTGTL+  
Sbjct: 575 EIAANEIIAFFKKEKNQKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHF 634

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQ 720
            R + +E + +LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +
Sbjct: 635 TREQIKEEIEKLGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDK 694

Query: 721 YN 722
           ++
Sbjct: 695 FD 696


>gi|110803876|ref|YP_699521.1| NAD-dependent DNA ligase LigA [Clostridium perfringens SM101]
 gi|122956526|sp|Q0SQT6|DNLJ_CLOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110684377|gb|ABG87747.1| DNA ligase, NAD-dependent [Clostridium perfringens SM101]
          Length = 662

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 218/710 (30%), Positives = 362/710 (50%), Gaps = 68/710 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74
           +K +  L +E++ +   YY      + D +YD  K+  + +     DL +      P  P
Sbjct: 4   KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128
             ++G  +     K TH     SL+K   +E++R++  R  +F ++ +  S      + +
Sbjct: 57  TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            L  K DG  I + Y E G  +  A RG G  GEDV+A ++ I +IP  L ++  + +E+
Sbjct: 117 ILTKKFDGLTINLSYDENGVLITGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
            GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 175 HGEAIMTTEAFEKYNSE----ADTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +
Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G 
Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D          + R G  +R+G  V V+R+ +VIP+++  +V E     +
Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               P  CP C + +V +           H  C   L C  Q ++ + HF  R+A NI G
Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K 
Sbjct: 450 FSERTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VG
Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           DI+A++I+EF++  R +  +  LL   V+P   + E  + S    K +V TGTL+   R 
Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             +E +  LGA VS  +S+KTD +I G+  GSK +KA+ LG+ I++EE+F
Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGITILSEEEF 658


>gi|294669029|ref|ZP_06734115.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291309021|gb|EFE50264.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 730

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 207/578 (35%), Positives = 314/578 (54%), Gaps = 99/578 (17%)

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN 180
           D ++  + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP R+   N
Sbjct: 19  DGSNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGEN 78

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238
            PE+IEVRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+ + IT  R L+F
Sbjct: 79  PPELIEVRGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHF 137

Query: 239 FVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRST 294
           F + + +    F A+   + L   + LGF + NG      F  I   +++Y +M+  R  
Sbjct: 138 FPYSVARQQGGFEAEEHIQELAYFQELGFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPE 195

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPY+IDG+V KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TP
Sbjct: 196 LPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTP 255

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV
Sbjct: 256 VARLHPVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVV 304

Query: 415 DIIVNERH--------------------------------PDAQPFSFPSFCPICQSRVV 442
            +I   R                                 P  +P+  P+ CPIC+S + 
Sbjct: 305 RVIFERRPMQETAVAVSDDLKQQQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIE 364

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           R+     G+ VA  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +    
Sbjct: 365 RE----EGEAVA--RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD---- 414

Query: 503 SIRIPADIF-----TLQRRQQTSTT-KIENILGFGDVSVTNLYDS--------------- 541
            +R  AD++     TLQ+ ++T+     EN  G  +    +L +S               
Sbjct: 415 LVRHFADLYRLDIPTLQKMKETADKGSSENENGDAETVSDDLSESNTPNGKKQPTKWAEN 474

Query: 542 ----INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
               I   +   L RF+F+LGIRHVG   A++LA+ + S ++  +    I+A        
Sbjct: 475 ILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILAC------- 527

Query: 598 LIRVPLVGDIIAQAIVEFY-QNPRNICAVEALLKEVSP 634
              +P +G ++A++I  F+ Q+ +     E L   V+P
Sbjct: 528 ---LPDIGTVVARSIAHFFAQDAQQAMIDELLAAGVAP 562



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           +V+  +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA
Sbjct: 653 DVNEAVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKA 712

Query: 702 QQLGVKIMNEEQFLFLLQ 719
             LGV +++EE+ L +L+
Sbjct: 713 NALGVAVLSEEELLAMLK 730


>gi|329924834|ref|ZP_08279795.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5]
 gi|328940396|gb|EGG36721.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5]
          Length = 670

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 223/720 (30%), Positives = 366/720 (50%), Gaps = 70/720 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI-AHAFPDLARSEDPNGPLN 76
           ++++  L  E++ ++  YY   +P++ D EYDAL  +  A+ A     L     P+ P  
Sbjct: 4   KEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAETGVTL-----PDSPTQ 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDN----SIFFT 129
           ++GGE+        H  P  SL+K  NIE LR +  R+ R    +  K+      S  + 
Sbjct: 59  RVGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPSPCYA 118

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIE 186
           LE K DG  + + Y+ GK V A+ RG+G  GE + A ++ I ++P    + IP     IE
Sbjct: 119 LELKFDGLTLNLTYQDGKLVQASTRGNGTVGEGILAQVKTIKSVP----MTIPYTEGTIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           V+GE  ++    L++ ++      +P  N RNAA+G LR LNP     R LN + + +G 
Sbjct: 175 VQGEGIMN----LSVLEQYNQTAAEPLKNARNAAAGALRNLNPKVTAERKLNAYFYNVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           +  I      EM+  +R     VN  +     F  ++    +++  RS L Y IDG V K
Sbjct: 231 SDGITFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVK 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V +F +++ LG   + PRW +++KF  ++ +T L  +   +GRTG +TP+AR+EPV + G
Sbjct: 291 VTDFRIREALGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             + N TL+N          G + R      +G RV ++R+ +VIP+++  +  E+  D 
Sbjct: 351 VTVQNCTLNN---------IGDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEEQ--DG 399

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIE 484
           +   +P  CP C   + +           AH  C     C  Q + R+ HF SRDA +IE
Sbjct: 400 EEILYPEQCPSCGFPLEQR---------GAHLFCNNKTGCKPQIVARITHFASRDAMDIE 450

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
               +     +        +R PAD++TL      S  K+E    FG+    NL D+I K
Sbjct: 451 TFSDKTAIQLYDE----LGVREPADLYTLSF---DSLLKLER---FGEKKAQNLLDAIEK 500

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +   L  F+F+LGI + G    + LA +Y       +++N ++A   ++   L+ +P V
Sbjct: 501 SKERDLASFLFALGIPNTGKSTTKMLADHY-------RDLNRVMAATAEE---LVELPDV 550

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661
           G I+A++I  ++ +P    +++ +L   V        K VS++     K +V TGTL  +
Sbjct: 551 GGIVAESIAGYFADPFAQASIQKMLSLGVQAKAPEAPKPVSTDSYFSGKTVVLTGTLHLL 610

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720
            R +A E +  LGA V+  +S+KTD++I G+  GSKL KAQQLG+ I+ +EE+F+ LL +
Sbjct: 611 TREEATERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670


>gi|109947386|ref|YP_664614.1| NAD-dependent DNA ligase LigA [Helicobacter acinonychis str.
           Sheeba]
 gi|123362647|sp|Q17XL1|DNLJ_HELAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|109714607|emb|CAJ99615.1| DNA ligase [Helicobacter acinonychis str. Sheeba]
          Length = 654

 Score =  323 bits (829), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 234/699 (33%), Positives = 362/699 (51%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY   +PI+ D+ YD L +   A     P   ++   N P  K+G        
Sbjct: 18  LSHH---YYNLDEPIVSDAVYDELYQELKAYEEKNPSQIQA---NSPTQKVGATALNQFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H     SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+KGK
Sbjct: 72  KNPHLTRMWSLDDVFNHNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQKGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            + A  RG+G  GE V+   + +  I   +  N  E IE+RGEV ISK DF ALN+E + 
Sbjct: 127 LMKATTRGNGLEGELVTTNAKHVANISHTIPYN--EEIEIRGEVIISKEDFNALNEERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ + IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SKITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I + Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIKHLSLNKNHQEIEANYHTLIQERERFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQCKIIRPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L CSA+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCSARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L           ++  + D++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLAKYGLY----------VLEKSEDEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  I   ++  SS   +K +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IQSLFDLLNPKNSDIIEEKQESSSIFSHKTIVLTGTLSKPRQEYAQ-ILENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +IVG+N GSKL  AQ+ GV I+NEE+ L  L++
Sbjct: 616 SAKTDFLIVGENAGSKLSLAQKHGVNILNEEELLKYLKE 654


>gi|261409569|ref|YP_003245810.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. Y412MC10]
 gi|261286032|gb|ACX68003.1| DNA ligase, NAD-dependent [Paenibacillus sp. Y412MC10]
          Length = 670

 Score =  323 bits (829), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 223/720 (30%), Positives = 366/720 (50%), Gaps = 70/720 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI-AHAFPDLARSEDPNGPLN 76
           ++++  L  E++ ++  YY   +P++ D EYDAL  +  A+ A     L     P+ P  
Sbjct: 4   KEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAETGVTL-----PDSPTQ 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDN----SIFFT 129
           ++GGE+        H  P  SL+K  NIE LR +  R+ R    +  K+      S  + 
Sbjct: 59  RVGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPSPCYA 118

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIE 186
           LE K DG  + + Y+ GK V A+ RG+G  GE + A ++ I ++P    + IP     IE
Sbjct: 119 LELKFDGLTLNLTYQDGKLVQASTRGNGTVGEGILAQVKTIKSVP----MTIPYAEGTIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           V+GE  ++    L++ ++      +P  N RNAA+G LR LNP     R LN + + +G 
Sbjct: 175 VQGEGIMN----LSVLEQYNQTAAEPLKNARNAAAGALRNLNPKVTAERKLNAYFYNVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           +  I      EM+  +R     VN  +     F  ++    +++  RS L Y IDG V K
Sbjct: 231 SDGITFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVK 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V +F +++ LG   + PRW +++KF  ++ +T L  +   +GRTG +TP+AR+EPV + G
Sbjct: 291 VTDFRIREVLGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             + N TL+N          G + R      +G RV ++R+ +VIP+++  +  E+  D 
Sbjct: 351 VTVQNCTLNN---------IGDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEEQ--DG 399

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIE 484
           +   +P  CP C   + +           AH  C     C  Q + R+ HF SRDA +IE
Sbjct: 400 EEILYPEQCPSCGFPLEQR---------GAHLFCNNKTGCKPQIVARITHFASRDAMDIE 450

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
               +     +        +R PAD++TL      S  K+E    FG+    NL D+I K
Sbjct: 451 TFSDKTAIQLYDE----LGVREPADLYTLSF---DSLLKLER---FGEKKAQNLLDAIEK 500

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +   L  F+F+LGI + G    + LA +Y       +++N ++A   ++   L+ +P V
Sbjct: 501 SKERDLASFLFALGIPNTGKSTTKMLADHY-------RDLNRVMAATAEE---LVELPDV 550

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661
           G I+A++I  ++ +P    +++ +L   V        K VS++     K +V TGTL  +
Sbjct: 551 GGIVAESIAGYFADPFAQASIQKMLSLGVQAKAPEAPKPVSTDSYFSGKTVVLTGTLHLL 610

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720
            R +A E +  LGA V+  +S+KTD++I G+  GSKL KAQQLG+ I+ +EE+F+ LL +
Sbjct: 611 TREEATERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670


>gi|317009372|gb|ADU79952.1| NAD-dependent DNA ligase LigA [Helicobacter pylori India7]
          Length = 656

 Score =  323 bits (828), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 231/699 (33%), Positives = 358/699 (51%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P   ++   N P  K+G        
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQA---NSPTQKVGATTTNPFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE VSA  + I  IP  ++      IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVSATTRGNGLEGELVSANAKHIANIPHAIAYKGE--IEIRGEVIISKEDFEALNKERLD 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R +    +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIQYLNLNKNHQEIEENYHTLIRERESFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVAILEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  +   R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ +     I 
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N +  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NALEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  +   ++  SS   NK +V TGTL K ++  AQ  +  LGA +++ +
Sbjct: 557 IRSLFDLLNPKNSGVTEEKQKSSSVFSNKTIVLTGTLSKPRQEYAQ-MLENLGAKIASSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++
Sbjct: 616 SAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKE 654


>gi|218509071|ref|ZP_03506949.1| NAD-dependent DNA ligase LigA [Rhizobium etli Brasil 5]
          Length = 275

 Score =  323 bits (828), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 152/275 (55%), Positives = 205/275 (74%), Gaps = 1/275 (0%)

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD   LQ++LG R+RSPRW
Sbjct: 1   GFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVDSLELQQRLGFRSRSPRW 60

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+ +GG ++TNATLHNEDYIKG+  
Sbjct: 61  ATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVVVTNATLHNEDYIKGIGN 120

Query: 385 SGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
           SG+ +R    DIR  D V+V+RAG+VIP+++D+++ +R  DA+ + FP  CP+C S  VR
Sbjct: 121 SGERIRPEEHDIRERDTVIVQRAGDVIPQILDVVMEKRAADARSYEFPKTCPVCGSHAVR 180

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           ++N KTGK  +  RCTGG  C AQ  E LKHFVSR+AF+IEGLG +Q+DFFF++EDP+  
Sbjct: 181 EVNEKTGKTDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGLGSKQVDFFFENEDPSLQ 240

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           IR   +IFTL++RQQ S TK+ENI GFG VSV  L
Sbjct: 241 IRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKL 275


>gi|269114974|ref|YP_003302737.1| NAD(+)-dependent DNA ligase [Mycoplasma hominis]
 gi|268322599|emb|CAX37334.1| NAD(+)-dependent DNA ligase [Mycoplasma hominis ATCC 23114]
          Length = 668

 Score =  323 bits (827), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 229/709 (32%), Positives = 370/709 (52%), Gaps = 49/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-PN 72
           IE+ RKE+  L+ +IS  D+ YY    P + D  YD    +  A+   +      E+  N
Sbjct: 7   IEKIRKEIFDLQAKISAWDNAYYNLDSPEVPDEIYDVEFNKLKALEEKYASFFSDEELKN 66

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  KI    +    KV H  P LSL K +++++++KFI  I     KK  +   F +EP
Sbjct: 67  SPTRKINALASDLFKKVKHKRPMLSLNKAYSLDEIQKFIDNI-----KKITSDFSFFIEP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  I+I YE GK V A  RGDG +GEDV+A +  +  IP+  ++   E +EVRGEVY
Sbjct: 122 KIDGLSISIIYEDGKLVRAITRGDGITGEDVTANVVQMSCIPK--TIEYKESLEVRGEVY 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ++ +DF  LN ++    +   ANPRNAA+G LR+LN   I  R L+ F++ +    +   
Sbjct: 180 LAISDFEKLNLKLGQENKNKLANPRNAAAGTLRQLNSQIIKERNLSAFLYYVVDPLQHNI 239

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K   E  + ++  GFPV + V+ ANT   I  Y    K+ +  + Y+ DG+V K++E   
Sbjct: 240 KTMQEEHEFLKTYGFPVTHEVQHANTLQDIEEYIRNFKNQKLLIDYETDGVVIKLNEVQY 299

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             +LG  A+ P + I+ K+     +T +  I   +GRTG++T  A LEPV I G+L++ A
Sbjct: 300 FDKLGSTAKFPHYAIAFKYEPNVETTTIKRIYATVGRTGLVTYNAELEPVEISGSLVSFA 359

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N  YIK L           ++   D V +K+AGE+IP V+ +I  ++  D   F   
Sbjct: 360 TLNNFQYIKDL-----------NLNENDLVYIKKAGEIIPCVIGLISGKKEIDH--FQKV 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            FCP C +++V   + +TG       C+    C   Q  +L HF S+D  +I  +G++ +
Sbjct: 407 EFCPYCHNKLV---DSETG---LEQFCSND-QCPEIQRRKLIHFCSKDGLDINTMGERNI 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D F K+      I  P DIF L+ ++Q     +  +   G+ S+ N+  SI++ +N  L 
Sbjct: 460 DLFLKNS----LISNPIDIFNLKNKKQD----LLKLNRMGEKSIENILISIDECKNKPLY 511

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + I +L I  +G ++A+ +A    S  N            N D+  LI    +GD I  +
Sbjct: 512 KMISALSIPLIGVKLAKFVASKIKSLHNLL----------NYDFSQLIDYHEIGDKIINS 561

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           I+ +  N  N   VE ++  +   +    +++++ +ENK  V TGTL    R   +  + 
Sbjct: 562 IISWISNDFNKKLVEDIIN-LGYDLKDENESITNLLENKSFVITGTLGH-PRSYFERLIE 619

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + G ++ + +S KT+ ++ G+N GSKL+KA +L + I+ EE    ++ Q
Sbjct: 620 KNGGLIHSSISSKTNYLLAGENAGSKLQKANKLNITIITEEDLFKMIGQ 668


>gi|331695637|ref|YP_004331876.1| DNA ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326950326|gb|AEA24023.1| DNA ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 812

 Score =  323 bits (827), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 187/564 (33%), Positives = 293/564 (51%), Gaps = 32/564 (5%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+  ++L  E++ H   YY    P++ D ++D L R   A+   +PDL     P+ P  K
Sbjct: 27  RERHAALATEVADHQFRYYVLDAPVVSDGQFDELWRELVALEERYPDLV---SPDSPTQK 83

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G           H    LSL+  ++ ++LR +  R+ R    +    + +  E KIDG 
Sbjct: 84  VGSRFATEFAAHDHLERMLSLDNAFSADELRTWAERVGR----EIGTDVHYLCELKIDGL 139

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193
            + + YE GK V A  RGDG +GEDV+  +R +  +P  L+      +P ++EVRGEVY 
Sbjct: 140 AVNLLYENGKLVRALTRGDGRTGEDVTLNMRTLAEVPEQLTGTAEFPVPALLEVRGEVYF 199

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
              DF ALN  ++  G+ P+ANPRN A+G LR+ +P    +R L    HGLGK      +
Sbjct: 200 RLEDFQALNASLVEAGKPPFANPRNTAAGSLRQKDPRVTASRNLRLICHGLGKREGFNPE 259

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              +    +R  G PV+   +       +V++       R  + ++IDG+V KVDE +LQ
Sbjct: 260 RLSQAYDALRAWGLPVSGRTKIVQGIDQVVAHVEYWGEHRHDIEHEIDGIVVKVDEVALQ 319

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I+ K+  ++A+TRLLDI + +GRTG +TP A +EPV + G+ ++ AT
Sbjct: 320 RRLGATSRAPRWAIAFKYPPEEATTRLLDIRVNVGRTGRVTPFAFMEPVTVAGSTVSLAT 379

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D ++         R G  + +GDRV++++AG+VIP+V+  I++ R    + F  P+
Sbjct: 380 LHNADEVR---------RKG--VLIGDRVVIRKAGDVIPEVLGPIIDVRDGSEREFVMPT 428

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +    + K G +    RC    +C AQ  ERL H   R AF+IEGLG +   
Sbjct: 429 HCPECGTELA---HQKAGDVDI--RCPNARSCPAQLRERLFHVAGRGAFDIEGLGYEAAT 483

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                   A  +    D+F L               G    +   L D++ K ++  L R
Sbjct: 484 ALLN----AGVVADEGDVFALTEEDLLRVDLFRTKAGVLSANGRKLLDNLEKAKDRPLWR 539

Query: 553 FIFSLGIRHVGAEIARSLAKYYLS 576
            +  L IRHVG   A++LA+ + S
Sbjct: 540 VLVGLSIRHVGPTAAQALAREFGS 563



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           + +V   +E   +V TG++    R +A+E +   G   +  +S+KT  ++ GD PGSK +
Sbjct: 718 DTSVPRTLEGMSIVVTGSMAGYSRDEAKEAIAARGGRAAGSVSKKTSFVVAGDAPGSKYD 777

Query: 700 KAQQLGVKIMNEEQFLFLL 718
           KA +L V I++E  F  LL
Sbjct: 778 KALELRVPILDEAGFGVLL 796


>gi|255281707|ref|ZP_05346262.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
 gi|255267774|gb|EET60979.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
          Length = 674

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 215/714 (30%), Positives = 359/714 (50%), Gaps = 50/714 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++E  ++++  L + + YH D YY    P I D EYD +     ++    P+L     P 
Sbjct: 4   TVETIQQKIEELRKTLEYHSDRYYNQDNPEISDYEYDQMMLELKSLEKEHPELI---TPE 60

Query: 73  GPLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P   +GG         V H +P LSL  +++ E++  F+  +   +   +     F +E
Sbjct: 61  SPTQHVGGTAKREAGVLVKHRVPMLSLADVFSREEVDAFVQDMQAQFGNPE-----FVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
            KIDG  + +RY  G    A  RGDG   GEDV+   R I  +   L   IP  +E+RGE
Sbjct: 116 TKIDGLSMALRYTDGVLTTAITRGDGIIQGEDVTENARVIKDVKTRLKHPIP-YLEIRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           VY++   F  +N++   +G+K +ANPRN A+G LR+L+ + IT  R L+ FV  + +T  
Sbjct: 175 VYMTDAAFEKVNEKQELLGKKLFANPRNCAAGTLRQLD-SRITKERELSLFVFNIQETQG 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E  + ++  G  V +  +   T   + +   E+ S+R  L YDIDG V K++ 
Sbjct: 234 REFTTHTEGYEYLKSNGIRVIDHYKVCRTADEVWNAIEEIGSMRGELGYDIDGAVVKLNS 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + +  +G  ++ PRW +++K+  ++  + LLDI++ +GRTG +TP A  EPV + G  +
Sbjct: 294 LAQRAIVGATSKVPRWAVAYKYPPEEKESVLLDIELSVGRTGRITPTAVFEPVRLCGTSV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+D+I  L           DI +GD ++V ++GE+IPK+  +   +R   A+ F
Sbjct: 354 SRATLHNQDFIDDL-----------DICIGDTIVVYKSGEIIPKIRAVKKEKRPQGAKRF 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C +  VR+      K  A  RCTG   C AQ    + +FV RDA +I+G G 
Sbjct: 403 RIPDVCPVCGAPAVRE------KDTADIRCTGS-NCPAQLERHIINFVGRDAMDIKGFGA 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +    +       ++  ADIF+L+  ++     IE  +   + +   L  +I   +  
Sbjct: 456 NYIIELVR----LGYLKNVADIFSLKEHREEL---IEQGIIGKEKNTDKLLKAIEDAKAN 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             +R +  LGI+ VG   ARSL  ++ + +  A      +   +D          +G I 
Sbjct: 509 QPDRLLTGLGIQGVGKATARSLMSHFGTIEKLAGASQEELESVSD----------IGSIS 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+AI  ++  P N   +E  L++   ++   ++   +    K  V TGTL  + R +A  
Sbjct: 559 AEAIRSYFAEPDNRRLLEK-LRDAGVNMEAEQEEAGTVFAGKTFVVTGTLPTMGRSEAVS 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            + +LG   +  +S+KT  ++ G+N GSKL KAQQLG+ +++E +FL +    N
Sbjct: 618 LIQKLGGKAAGSVSKKTSYVLAGENAGSKLTKAQQLGIPVIDEAEFLEMAAAEN 671


>gi|300933643|ref|ZP_07148899.1| NAD-dependent DNA ligase LigA [Corynebacterium resistens DSM 45100]
          Length = 680

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 219/712 (30%), Positives = 354/712 (49%), Gaps = 60/712 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H + YY Y  P I D+++DAL  +   +    P+L     P   L ++     
Sbjct: 11  LADEVRLHRERYY-YGDPTISDADFDALLAQLRTLEDEHPELVTGPSP---LTEVAPTPP 66

Query: 84  LS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
            S     V H    LSL+ +++   L          W ++     + T E KIDG  I +
Sbjct: 67  TSSPFRNVDHRERMLSLDNVFDGAQLES--------WLERTPADTYLT-ELKIDGASINL 117

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKND 197
            Y  G+   A  RGDG +GED++   + +  IP+ L       +PE++EVRGEV+I+  D
Sbjct: 118 LYVNGELELALTRGDGTTGEDITHNAKTLDDIPQKLKGTEEFPVPELVEVRGEVFITVED 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N +  A G K +ANPRNAA+G +R+ N  D   R L    HG+G       + Q+E
Sbjct: 178 FATMNAQRQAEGLKMFANPRNAAAGAMRQKNAEDTAKRPLRLICHGIGAREGFTPQSQHE 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
             Q +   G PV+   +Q ++   +V         R    +++DG+V KVD  S Q +LG
Sbjct: 238 AYQAIAAWGLPVSPYTKQVHSAKEVVEQVTYWGEHRHDAAHEMDGVVIKVDSLSEQLELG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN- 375
             +R+PRW I++K+  ++A T L +I I IGRTG  TP A +EP  + G+ +T ATLHN 
Sbjct: 298 ATSRAPRWAIAYKYPPEEAVTTLRNIRIGIGRTGRATPYAVMEPKYVAGSTVTMATLHNP 357

Query: 376 -EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
            E + KG             + +GDR+++++AGEVIP+V+  + +ER    +PF + S C
Sbjct: 358 TEAHRKG-------------VMLGDRIMIRKAGEVIPEVLGPVEDERTGKERPFIYSSIC 404

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +      K G   A  RC    +C  Q   RL +   R AF+I+ LG++     
Sbjct: 405 PECGTVLAPS---KEGD--ADWRCPNTRSCPGQLHTRLTYLSGRGAFDIDALGERAAYDL 459

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             S      +   + +F L+++    TT      G  + +   L + +   + + L R I
Sbjct: 460 INS----GVLSDESGLFNLKKQDLERTTAYSTKAGSLNKAGETLLEKLESAKQVDLWRVI 515

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-- 612
            +L IRH G   A++LA +Y          ++I A        +  +  VG+IIAQ+I  
Sbjct: 516 VALSIRHAGPTAAKALAAHY----------HSIAAIQGASVEEMSTIEGVGEIIAQSIAD 565

Query: 613 ---VEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
              V++++N  N  +   + ++E  P     +   +  ++   +V TGTL+   R  A+E
Sbjct: 566 WFTVDWHRNIVNSWSTAGVRMEEEVPEKSEEDLAQAKLLDGLTIVVTGTLENFDRDGAKE 625

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +   G   +  +S+KT  ++ G+  GSKL KA+ LGV ++NE+QF+ LL++
Sbjct: 626 AIEARGGKAAGSVSKKTSFLVAGEKAGSKLTKAEDLGVPVLNEQQFVELLEK 677


>gi|308184399|ref|YP_003928532.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180]
 gi|308060319|gb|ADO02215.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180]
          Length = 656

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 230/699 (32%), Positives = 360/699 (51%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY   + I+ D+ YD L +   A     P+  ++   N P  K+G        
Sbjct: 18  LSHH---YYNLDESIVSDAVYDELYQELKAYEEENPNRIQA---NSPTQKVGATTTNPFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y  GK
Sbjct: 72  KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYHHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE V+   + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVSATTRGNGLEGELVTHNAKHIANIPHFIAYNGE--IEIRGEVIISKEDFEALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+G+ S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGEHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  +   R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  +   ++  SS   +K +V TGTL K ++  AQ  +  LGA +++ +
Sbjct: 557 IRSLFDLLNPKNSDMAEEKQKSSSVFSDKTIVLTGTLSKPRQEYAQ-MLENLGAKIASSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +IVG+NPGSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 616 SAKTDFLIVGENPGSKLALAQKHGVSVLNEEELLKRLKE 654


>gi|262341099|ref|YP_003283954.1| DNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272436|gb|ACY40344.1| DNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 681

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 215/708 (30%), Positives = 350/708 (49%), Gaps = 70/708 (9%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +E+S ++  YY +    I D  +D        +   +P+     DP  P  KIG E++
Sbjct: 28  LRKELSKYNYQYYNFDTSDISDFHFDKKLEELFFLEKKYPEFY---DPTSPTIKIGAEIH 84

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF---FTLEPKIDGTMIT 140
                  H     SL+K ++ ++L          W+KK   SI    F  E K DG  I 
Sbjct: 85  EPSTVFYHKYKMYSLQKTYSKKELI--------IWKKKISKSIHTFSFVCELKYDGVSIN 136

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199
           + Y+ G    A  RG+G  GEDV+  I+ I  +P ++   N P  +E+RGEV+++  +F+
Sbjct: 137 LIYKNGFLTNAGTRGNGEKGEDVTENIKTIKHVPLKLRGNNYPAYLEIRGEVFLTTKNFI 196

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV---HGLGKTSEIFAKGQYE 256
            +N + I  G+ PYANPRN ASG L+ +      R  N F    H +GK        QYE
Sbjct: 197 EINKKRIKSGKTPYANPRNTASGTLK-IQDRKKVRQRNLFCIAFHVVGKNLPF--DTQYE 253

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++  GF +    R       +  + +     +  LPY IDG+V KV+E+  Q  LG
Sbjct: 254 SLKHIKNWGFQIPETARFCKNMEEVFHFIDFWNLWKDKLPYQIDGIVIKVNEYQKQSLLG 313

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + PRW I++KF +K + T+LL +  Q+GRTGI+TPVA + P+ I G +I    L+N+
Sbjct: 314 FTNKYPRWAIAYKFRQKLSETKLLSLTFQVGRTGIVTPVANVVPILISGTIIKRVALYND 373

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
            +I+ +            I  GD +L+++ G +IPKV  I + +R   A P  F   CP 
Sbjct: 374 SFIQKM-----------GIYHGDTLLLEKGGNIIPKVTRINIKKRSSQAFPVFFLKKCPS 422

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S + ++             CT    C +Q++E+++HFVS  A NI+ +G + +   +K
Sbjct: 423 CNSVLTKN--------NELFYCTNQ-NCFSQRIEKIRHFVSVKAMNIQKIGNEMIKKLYK 473

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                        +++     +    ++  I G  +    ++ ++I K +     R +++
Sbjct: 474 K----------GFLYSFYNLYELKKEELLQIDGVKEKLADSIINNIKKSKENPFSRVLYA 523

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG +I++ L K +L       +IN+++  N D    LI +  +G  I ++I+ ++
Sbjct: 524 LGIRHVGEDISKKLTKQFL-------DINSLMHANYDH---LISISGIGKKITESIITYF 573

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
               N  AV+ L+K      G H    S   S +E K  VFTG L  + RHKAQ  V  L
Sbjct: 574 SIYENRHAVQMLIK-----YGLHFSKCSKKLSSLEGKSFVFTGKLSCMTRHKAQNMVENL 628

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
           G  V   ++ + + I++G N GSK +K+ +   V+I+ E  FL +L++
Sbjct: 629 GGKVYNTVNNQINFIVIGKNFGSKFKKSMKKNHVQILTENLFLDMLKK 676


>gi|160947381|ref|ZP_02094548.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270]
 gi|158446515|gb|EDP23510.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270]
          Length = 662

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 214/700 (30%), Positives = 365/700 (52%), Gaps = 80/700 (11%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PNGPLNKIGGEMNLSLFK 88
           YY   +P + D+EYD L          + +L + E       PN P  ++GGE+     K
Sbjct: 18  YYTLDEPSVSDAEYDKL----------YDELLKLEKETGVILPNSPTQRVGGEVLEKFEK 67

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTLEPKIDGTMITIRY 143
            TH     SL+K  + E+L++F  R  +   + +       ++ + +E K DG  I + Y
Sbjct: 68  HTHLKELYSLQKAQSFEELKEFHNRCTKLLNEYNSINNSKKTLEYYVEFKFDGLTINLTY 127

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           +KG  V A+ RG+G  GE+V   ++ I +IP  L ++   ++E++GE  +  +     N+
Sbjct: 128 DKGILVSASTRGNGVYGEEVFEQVKTIKSIP--LEIDYKGLVEIQGEAIMPLSALTKFNE 185

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
                   P  N RNAA+G +R L+P    +R L+ F++ +G  S+   K Q EM+  ++
Sbjct: 186 ----TAEVPLKNARNAAAGAIRNLDPKKTASRNLDAFIYNVGFKSDEQFKTQKEMISFLK 241

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
              F VN   ++      I     E+  +R  + Y  DG+V KV++F L++  G   + P
Sbjct: 242 ENKFKVNEYEKKCLNLKEIKDKIREIDVLRKKVDYLTDGVVIKVNDFELREFFGYTNKFP 301

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           R+ I++KF  ++ ST L ++   +GRTG +TP A LEPV IG   +  ATL+N D     
Sbjct: 302 RFAIAYKFEAEEYSTILKEVVWNVGRTGKVTPTAILEPVEIGDVTVQRATLNNYD----- 356

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                ++R  + +++  RVL++R+ +VIP+++  + +E + +      P+ CP C S ++
Sbjct: 357 ----DILR--KKVKINSRVLIRRSNDVIPEILGTM-DEDNGNEIEIKMPTHCPYCNSELI 409

Query: 443 RDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           RD           H  CT  LAC+ Q    L HF S++A NIEGL ++ ++  F      
Sbjct: 410 RD---------GVHFFCTNTLACTPQLTSSLVHFSSKNAMNIEGLSEKTIESLF----DK 456

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +     I+ L+  +  +  K      F D  V NL +SI + + ++LE FI++LGI++
Sbjct: 457 LGVDKVYKIYDLKYDELITLEK------FKDKKVNNLLNSIEESKKVNLENFIYALGIKN 510

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG + A+ LAK Y++  N  +     +   ND          VGD++A +I EF+ +  +
Sbjct: 511 VGIKTAKDLAKKYINLDNLRETTVEELLQIND----------VGDVVANSIFEFFNDEYS 560

Query: 622 ICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
             A+  LL+   EV P    +++   SE  +KK+V TGT +  +R   ++  +Q G +V 
Sbjct: 561 KDALNKLLEKGIEVIP----YKEISKSEFTDKKIVITGTFKNYKRKDLEDIFSQNGLIVQ 616

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE---EQFL 715
           + +++ TD ++VG+  GSKL+KAQ+LG+ I++E   E+FL
Sbjct: 617 SAVAKSTDFLVVGEKAGSKLKKAQELGINIISEKNLEEFL 656


>gi|81390835|sp|Q6AEE5|DNLJ_LEIXX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50951550|gb|AAT89251.1| DNA ligase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 747

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 242/774 (31%), Positives = 369/774 (47%), Gaps = 101/774 (13%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR E   L   I    D YY+    ++ D EYD + RR + +    P+L +S+D   P  
Sbjct: 5   ARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPEL-QSQD--SPTQ 61

Query: 77  KIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            +GG    +LF  V H+   LSL+ +++ E    +  +I R   ++ D    +  E KID
Sbjct: 62  TVGGRAQTTLFAPVEHAERMLSLDNVFSFEAFEAWAAKIERDAGRRVD----YLCELKID 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEVYI 193
           G  I +RYE G  V AA RGDG  GEDV+  IR IP I + LS     P ++EVRGEV+ 
Sbjct: 118 GLAINLRYENGVLVTAATRGDGVVGEDVTENIRHIPAITQRLSGAGPFPPVVEVRGEVFF 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRL----NPT------DITRYLNFFVHGL 243
               F  LN    A G + +AN RNAASG LR+     NP       D    L   VHG+
Sbjct: 178 PVAKFEELNANQQAAGERVFANARNAASGSLRQKAEGKNPAQRRLMRDRLGRLRMLVHGI 237

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G         Q  + + +R  G P +   R   T      +       R T+ ++IDG+V
Sbjct: 238 GAWPNPPVATQSGVYELLRSWGLPTSAHGRVFGTVQEAADFIGRSAERRDTVEHEIDGVV 297

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVDE  L  +LG  +R+PRW I++K+  +Q +T+LLDI + +GRTG  TP A +E V +
Sbjct: 298 IKVDELVLHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFAVMEKVKV 357

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  ATLHN+D +K            + + +GD V++++AG+VIP+V+  +V  R  
Sbjct: 358 AGSEVRQATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEVLGPVVELRDG 406

Query: 424 DAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             + F+ P+ CP C +     L P K G +    RC     C AQ   R++H  SR   +
Sbjct: 407 TEREFAMPTDCPECGT----PLAPAKEGDI--DLRCPNAEFCPAQVRGRVEHIGSRGGLD 460

Query: 483 IEGLGK------QQLDFFFKSEDPA----FSIRIPADIFTLQ---RRQQT-----STTKI 524
           IE LG+       Q  F  ++  P     F +R+  D+F ++   R  +T     + T +
Sbjct: 461 IEALGEVAAAALTQPRFPERAPLPTEAGLFGLRL-EDLFPIEVVVRDSETGLPKLTETGV 519

Query: 525 ENI--------------------------LGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
           E +                          +     S   L  ++   R   L R + SL 
Sbjct: 520 EKVDAPFRRRRQKKDGAFDPEAEAFDGDEIAVPSKSAIELLANLRAARTKPLWRILVSLN 579

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG   AR+LA ++ S       ++ I A + D+   L  V  VG I+A A++ +++ 
Sbjct: 580 IRHVGPVAARALADHFGS-------LDAIRAASRDE---LAAVDGVGGIVADAVLSWFEI 629

Query: 619 PRNICAVEALLKE-------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             +   VE   ++         P  GR +      +    +V TG+L+   R  AQE + 
Sbjct: 630 GWHCEIVENWARDGVQFAIPGHPGPGRADTG-GGVLSGLTVVATGSLEGYTREAAQEAIV 688

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             G   ++ +S+KTD +  G   GSKL KA++LGV++++  QF  L++Q    L
Sbjct: 689 AAGGKAASSVSKKTDFVAAGPGAGSKLAKAEELGVRVLDAAQFTILVEQGPGAL 742


>gi|124024594|ref|YP_001018901.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
           9303]
 gi|166216228|sp|A2CDS6|DNLJ_PROM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123964880|gb|ABM79636.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9303]
          Length = 696

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 215/715 (30%), Positives = 356/715 (49%), Gaps = 71/715 (9%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED----PNGPLNK 77
           + L Q ++     YY    P + D+ YD L R          DL   +     P+ P  +
Sbjct: 13  AELRQLLNQAAHSYYVLDTPTMEDAVYDRLYRE-------LLDLEVKDSSLLTPDSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-----YRFWQKKDDNSIFFTLEP 132
           IGG        V H IP LSL+  +N+++L  +  R+     Y+   K     +    E 
Sbjct: 66  IGGAPAQGFASVPHRIPLLSLDNAFNVDELTGWYVRLVKLLGYQTNPKTPQPDLSMVGEL 125

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191
           KIDG  + + YE G  + AA RGDG +GE+++A +R I +IP  L L + P  +EVRGE 
Sbjct: 126 KIDGNALALSYEHGVLIRAATRGDGANGEEITANVRTIASIPLRLQLVHPPAWLEVRGEA 185

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           +I  + F  +N      G   +ANPRNA +G LR+L+P  + +R L+FF + L       
Sbjct: 186 FIPNSTFADINTARGERGDVAFANPRNACAGTLRQLDPKVVASRQLDFFAYTLHLPDNWQ 245

Query: 251 AKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           AK         Q+ +LQ ++ +GF VN           +  ++      R  LPY  DG+
Sbjct: 246 AKADDPASPMNQWAVLQWLQAIGFKVNPNTALLTDLTAVEHFFKLWDEARHQLPYATDGV 305

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K+++  LQ+  G   ++PRW I+ K+A ++A ++LL +  Q+GRTG +TPVA  E + 
Sbjct: 306 VVKLNDLQLQETAGFTQKAPRWAIALKYAAEEAPSKLLRLTCQVGRTGAVTPVAEFEAIP 365

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ ATLHN + +  L           D+  GD ++V++AGE+IP+V+ ++   R 
Sbjct: 366 LAGTSVSRATLHNANRVSEL-----------DLHSGDTIVVRKAGEIIPEVIGVLRELRP 414

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             AQ    P  CP C+S +VR+     G+  AA RC    +C A     L+H+VS+ A +
Sbjct: 415 AGAQTLKLPHICPECRSDLVRE----EGE--AATRCVNN-SCPAILRGTLRHWVSKGALD 467

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           ++GLG + ++           ++  AD++ L+     S  ++      G+ S  NL  ++
Sbjct: 468 VDGLGSKLIEQLVNRG----LVQSIADLYALEASLLASMDRM------GNKSTENLITAL 517

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              ++    + ++ LGI HVG   A++LAK + S    A    N      +   S+    
Sbjct: 518 QASKSKPWHKQLYGLGIHHVGEVNAKALAKKFPSAATLA----NAACKAPEQITSVFG-- 571

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---------LV 653
            VG+ IAQ++ +++  P N   + A LK++  S+  +E  ++ + + K+          V
Sbjct: 572 -VGNEIAQSLQQWFATPAN-QELLAKLKQLGISLEANEDELAHDTDQKQRTVSLQGQTFV 629

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            TGTL  + R +AQ  +   G  V++ +S+ T  ++ G   GSKL KA++L V +
Sbjct: 630 LTGTLPTLSRSEAQALIEAAGGKVNSSVSKNTSYVVAGAEAGSKLNKAEKLRVTV 684


>gi|108563021|ref|YP_627337.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPAG1]
 gi|123246990|sp|Q1CTQ9|DNLJ_HELPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|107836794|gb|ABF84663.1| DNA ligase [Helicobacter pylori HPAG1]
          Length = 656

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 230/699 (32%), Positives = 357/699 (51%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P   ++   N P  K+G        
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQA---NSPTQKVGATATNPFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y  GK
Sbjct: 72  KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYHHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            + A  RG+G  GE VSA  + I  IP  ++      IE+RGEV ISK DF ALN E + 
Sbjct: 127 LISATTRGNGLEGELVSANAKHIANIPHAIAYKGE--IEIRGEVIISKKDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+I  ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAMINRATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSYELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ +     I 
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A+++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  +   ++  SS   NK +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KT+ +IVG+N GSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 616 SAKTNFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKE 654


>gi|317010835|gb|ADU84582.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SouthAfrica7]
          Length = 657

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 231/700 (33%), Positives = 361/700 (51%), Gaps = 65/700 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY   +PI+ D+ YD L +   A     P   ++   N P  K+G        
Sbjct: 18  LSHH---YYNLDEPIVSDAVYDELYQELKAYEEENPSYIQA---NSPTQKVGATTPNPFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N ++L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNYDELQTWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE V+   + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVTTNAKHITNIPHAIAYNGE--IEIRGEVIISKEDFDALNKERLD 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E + QK+LG   +SP++ 
Sbjct: 243 FSAIKHLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNTQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAIITKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIMRPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+++     I 
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEAK----LIV 458

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
              D++ L+        K      F      NL D+I K +N  L R I +LGI H+G  
Sbjct: 459 NALDLYALKLEDLIQLDK------FKMKKAQNLLDAIQKSKNPPLWRLINALGIEHIGKG 512

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            +++LAKY L          N++  +  ++L +      G  +A+++V FY + +    +
Sbjct: 513 ASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF--I 557

Query: 626 EALLKEVSPSIGR-HEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           ++L   ++P      EK  SS I  +K +V TGTL K ++  AQ  +  LGA +S+ +S 
Sbjct: 558 QSLFDLLNPKNSDIEEKQESSSIFSHKIIVLTGTLSKPRQEYAQ-ILENLGAKISSSVSA 616

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++ ++
Sbjct: 617 KTDFLIVGENAGSKLSLAKKHGVSVLNEEELLKYLKELDS 656


>gi|254517673|ref|ZP_05129729.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA]
 gi|226911422|gb|EEH96623.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA]
          Length = 663

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 217/718 (30%), Positives = 372/718 (51%), Gaps = 73/718 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------P 71
           ++ +  L  E++ +   YY    P + D +YD            + +L + E+      P
Sbjct: 4   KQRIEELVNELNRYAYEYYSLDNPSVSDKDYD----------KKYDELKKLEEETNYVLP 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSI 126
             P  ++G  +     K TH     SL+K  ++E+L+ +  R  +F ++     +D    
Sbjct: 54  YSPTLRVGDRVLEGFNKYTHKARLWSLDKAQSLEELKDWHNRNLKFIREMNSRGEDLPEP 113

Query: 127 FFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
            + L  K DG  + + Y E G    AA RG+G  GE+VSA ++ I +IP  L +N  ++ 
Sbjct: 114 RYVLTKKFDGLTVNLTYDENGILASAATRGNGEVGEEVSAQVKTIKSIP--LKINNDDLF 171

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           E+ GE  ++   F   N         P  N RN A+G LR LN  +   R L+ F + +G
Sbjct: 172 EIHGEAIMTTEAFENYNKNADV----PLKNLRNGAAGALRNLNLKETAKRNLSAFFYDVG 227

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            K  E F K   EML  ++  G P+++ +R   T   I    + ++ IR  L YDIDG+V
Sbjct: 228 YKEGEGF-KTYEEMLNFIKDKGLPMDDYIRYCTTIEEIEKEIDYIREIRFDLNYDIDGVV 286

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
             +D+   ++ +G   + P+W I++KF  ++A+T+L+D++  +GR+G + P A L+P+++
Sbjct: 287 IAIDDIRTRELMGYTVKFPKWAIAYKFEAQEATTKLVDVEWNVGRSGRVGPTAILDPIDL 346

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  ATL+N D I+         R G  +R+G  V V+R+ +VIP+++  +V E   
Sbjct: 347 AGVTVKRATLNNIDDIR---------RKG--VRIGAEVFVRRSNDVIPEIMG-VVTESLE 394

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             +  + P  CP C + +V++           + C   L+C  Q ++ + H+ SRDA NI
Sbjct: 395 GTEEINVPEVCPACGAHLVQN--------GVHYFCENTLSCKPQMVKTIVHYASRDAMNI 446

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EG  ++  +  F+  D    I+  AD++ LQ+ +     K      FG     NL D++ 
Sbjct: 447 EGFSEKTAEQLFEKLD----IKSIADLYKLQKEELLQLDK------FGPKKAQNLLDAVE 496

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K ++  L RFI+SLGI +VG + A+ L   + S +          + + DD   L+ V  
Sbjct: 497 KSKDCELYRFIYSLGIPNVGVKTAKDLVNKFKSLEGLK-------SASFDD---LVSVQD 546

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           VG I+A+ ++EF++  + +  +  LL+  V+P     ++ +SS  E K +V TGTLQ   
Sbjct: 547 VGGIVAKCVLEFFKEEKAVNTINELLELGVNPKF-EEKQIISSPFEGKTVVVTGTLQNYS 605

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R + +  +  LGA VS  +S+KTD +I G+  GSKL+KA +LGVK++NE++F  ++++
Sbjct: 606 RGEIKAKLELLGAKVSGSVSKKTDFVIAGEEAGSKLDKAIELGVKVLNEDEFEDIIKE 663


>gi|260577534|ref|ZP_05845474.1| DNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258604338|gb|EEW17575.1| DNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 688

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 216/714 (30%), Positives = 349/714 (48%), Gaps = 65/714 (9%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++ +H   YY Y +P I D+++DAL +    +  A P++     P   +        
Sbjct: 10  LADQVRHHRQLYY-YGEPEISDADFDALLQELKDLEQAHPEVVTGASPTEEVAP--APPT 66

Query: 84  LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
            S F+ V H    LSL+ +++ E L  ++ R           +  +  E KIDG  I + 
Sbjct: 67  SSPFRNVDHREQMLSLDNVFDTEQLAGWLDRT---------PAKTYLTELKIDGASINLL 117

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDF 198
           Y  G+   A  RGDG +GED++   R +  IP  L       +PE++E+RGEV+I   DF
Sbjct: 118 YIDGQLELALTRGDGTTGEDITHNARTLDDIPDTLHGTDEFPVPELVEIRGEVFIDVEDF 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
            A+N +  A G K +ANPRNAA+G +R+ N  D   R L    HG+G         Q++ 
Sbjct: 178 AAMNAQRQAEGLKMFANPRNAAAGAMRQKNSADTAKRPLKLICHGIGAREGFSPASQHDA 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            + +   G PV+   +Q ++   +        + R    +++DGLV KVD    Q +LG 
Sbjct: 238 YRAIAAWGLPVSPYTKQVHSAKEVQQQVEYWGNHRHDAAHEMDGLVVKVDSLEEQLELGH 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN-- 375
            +R+PRW I++K+  ++A T L +I + IGRTG  TP A +EP  + G+ ++ ATLHN  
Sbjct: 298 TSRAPRWAIAYKYPPEEAMTTLHNIRVGIGRTGRATPYAVMEPKYVAGSTVSMATLHNPT 357

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           E + KG             + +GD + +++AGEVIP+V+  + ++R    +PF F +FCP
Sbjct: 358 EAHRKG-------------VMLGDTITIRKAGEVIPEVLGPVEDKRTGAERPFLFSTFCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C +R+      K G   A  RC     C  Q   RL +  SR AF+I+ LG++      
Sbjct: 405 ECGTRLAPS---KVGD--ADWRCPNTQYCPGQLHTRLTYLASRKAFDIDALGEKGAYDLI 459

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            S      +   +++F L       T+      G  + S   L + +   +   L R + 
Sbjct: 460 HS----GVLADESELFDLSAEDLEKTSSYATKAGKLNKSGETLLEKLQSAKEADLWRVLV 515

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFA----QEINNI------IAHNNDDWLSLIRVPLVG 605
           +L IRHVG   A++LAK++ S ++ A    +E+  I      IA +  DW ++     + 
Sbjct: 516 ALSIRHVGPTAAKALAKHFESVEDIASASVEEMAGIDGVAETIAESISDWFTVDWHRRIV 575

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           D  A A V  +Q             E   + G  +   S+ +E   +V TG+L+   R  
Sbjct: 576 DRWAAAGVRMHQ-------------EAGEASGEADGVDSALLEGLTIVVTGSLEDFDRTA 622

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +   G   +  +S+KTD ++ G+  GSKL+KA+ LGV +++E  F  LL+
Sbjct: 623 AKEAIEARGGKAAGSVSKKTDFLVAGEKAGSKLKKAEDLGVPVLDEAGFKELLE 676


>gi|161760708|ref|YP_062356.2| NAD-dependent DNA ligase LigA [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 755

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 242/774 (31%), Positives = 369/774 (47%), Gaps = 101/774 (13%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR E   L   I    D YY+    ++ D EYD + RR + +    P+L +S+D   P  
Sbjct: 13  ARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPEL-QSQD--SPTQ 69

Query: 77  KIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            +GG    +LF  V H+   LSL+ +++ E    +  +I R   ++ D    +  E KID
Sbjct: 70  TVGGRAQTTLFAPVEHAERMLSLDNVFSFEAFEAWAAKIERDAGRRVD----YLCELKID 125

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEVYI 193
           G  I +RYE G  V AA RGDG  GEDV+  IR IP I + LS     P ++EVRGEV+ 
Sbjct: 126 GLAINLRYENGVLVTAATRGDGVVGEDVTENIRHIPAITQRLSGAGPFPPVVEVRGEVFF 185

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRL----NPT------DITRYLNFFVHGL 243
               F  LN    A G + +AN RNAASG LR+     NP       D    L   VHG+
Sbjct: 186 PVAKFEELNANQQAAGERVFANARNAASGSLRQKAEGKNPAQRRLMRDRLGRLRMLVHGI 245

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G         Q  + + +R  G P +   R   T      +       R T+ ++IDG+V
Sbjct: 246 GAWPNPPVATQSGVYELLRSWGLPTSAHGRVFGTVQEAADFIGRSAERRDTVEHEIDGVV 305

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVDE  L  +LG  +R+PRW I++K+  +Q +T+LLDI + +GRTG  TP A +E V +
Sbjct: 306 IKVDELVLHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFAVMEKVKV 365

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  ATLHN+D +K            + + +GD V++++AG+VIP+V+  +V  R  
Sbjct: 366 AGSEVRQATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEVLGPVVELRDG 414

Query: 424 DAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             + F+ P+ CP C +     L P K G +    RC     C AQ   R++H  SR   +
Sbjct: 415 TEREFAMPTDCPECGT----PLAPAKEGDI--DLRCPNAEFCPAQVRGRVEHIGSRGGLD 468

Query: 483 IEGLGK------QQLDFFFKSEDPA----FSIRIPADIFTLQ---RRQQT-----STTKI 524
           IE LG+       Q  F  ++  P     F +R+  D+F ++   R  +T     + T +
Sbjct: 469 IEALGEVAAAALTQPRFPERAPLPTEAGLFGLRL-EDLFPIEVVVRDSETGLPKLTETGV 527

Query: 525 ENI--------------------------LGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
           E +                          +     S   L  ++   R   L R + SL 
Sbjct: 528 EKVDAPFRRRRQKKDGAFDPEAEAFDGDEIAVPSKSAIELLANLRAARTKPLWRILVSLN 587

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG   AR+LA ++ S       ++ I A + D+   L  V  VG I+A A++ +++ 
Sbjct: 588 IRHVGPVAARALADHFGS-------LDAIRAASRDE---LAAVDGVGGIVADAVLSWFEI 637

Query: 619 PRNICAVEALLKE-------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             +   VE   ++         P  GR +      +    +V TG+L+   R  AQE + 
Sbjct: 638 GWHCEIVENWARDGVQFAIPGHPGPGRADTG-GGVLSGLTVVATGSLEGYTREAAQEAIV 696

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             G   ++ +S+KTD +  G   GSKL KA++LGV++++  QF  L++Q    L
Sbjct: 697 AAGGKAASSVSKKTDFVAAGPGAGSKLAKAEELGVRVLDAAQFTILVEQGPGAL 750


>gi|37520296|ref|NP_923673.1| NAD-dependent DNA ligase LigA [Gloeobacter violaceus PCC 7421]
 gi|81710991|sp|Q7NMN8|DNLJ_GLOVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|35211289|dbj|BAC88668.1| DNA ligase [Gloeobacter violaceus PCC 7421]
          Length = 668

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 221/710 (31%), Positives = 356/710 (50%), Gaps = 59/710 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE+  + L +L     Y    YY    P + D+ YD   R    +   +P+L     P+ 
Sbjct: 9   IEEHTRTLRALLHRWGY---AYYVLDAPEVSDAIYDQHYRELVDLESRYPELV---SPDS 62

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +   VTH +P  SLE  ++  +L K+  R+ R         + F  E K
Sbjct: 63  PTRRVGERPASAFVSVTHRVPMFSLENAFSQAELEKWGERLLR----AIGPGLEFICELK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           IDG+   + YE G  V  A RGDG  GE+++  +R I  IP ++L   +P ++EVRGE +
Sbjct: 119 IDGSATALSYEDGVLVRGATRGDGVEGEEITQNLRTIRAIPLKLLGGEVPAVLEVRGEAF 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG--LGKTSEI 249
           I +++F  +N E  A G K +ANPRNA +G LR+L+   + +R L FF +    G+    
Sbjct: 179 IPRDEFERINQERQAAGEKLFANPRNACAGTLRQLDSRVVASRRLGFFAYTAHYGR---- 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A+ Q+E L ++   GF VN           + ++    ++ R  LPYD DG+V KV+ F
Sbjct: 235 -AESQWEALAELESHGFRVNPHRSLCRDLAEVRTFCEHWENHRHELPYDTDGVVVKVNAF 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+++G  ++ PRW I+ K+  ++ ST +  I +Q+GRTG LTPVA L+PV + G  ++
Sbjct: 294 DHQREVGFTSKFPRWAIAFKYPAEEKSTVVEAIAVQVGRTGALTPVAELQPVAVAGTTVS 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D I+ L           D+RVGD V++++AGE+IP+VV +I   R P+A P+ 
Sbjct: 354 RATLHNQDRIESL-----------DVRVGDTVIIRKAGEIIPEVVRVIGELRPPEAVPYV 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP C + VVR          AA RC     C A    +L H+ +  A  I+G+G +
Sbjct: 403 FPQTCPECGTAVVRAPGE------AAVRCPNP-RCPALIRGKLGHWCA--ALEIDGIGDK 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +            +   AD++ L      S  ++  +   G  S   + + +++     
Sbjct: 454 LIARLVS----LGLVHTVADLYEL------SAEQLAGLERLGARSAAKIVEQLDRSHRQP 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ LG+RH+GA ++  LA+ + S    A+     IA       SL      G+ +A
Sbjct: 504 WSRVLYGLGLRHIGASVSVELARAFASADALARADLAAIA-------SLYG---FGEELA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +++VE++    N   +E L        G      SS +     V TGTL  + R +    
Sbjct: 554 RSVVEWFAQAENRALLERLKAHGLQLAGGGRAAQSSALAGLTFVITGTLPTLSREECTAL 613

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +   G  V++ +S +T  ++ G+  GSKL +AQ L V +++EEQ   L++
Sbjct: 614 IESHGGKVTSSVSSRTSYVVAGEKAGSKLARAQDLKVAVLDEEQLRALIE 663


>gi|182413875|ref|YP_001818941.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
 gi|254778152|sp|B1ZMR3|DNLJ2_OPITP RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|177841089|gb|ACB75341.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
          Length = 708

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 221/708 (31%), Positives = 342/708 (48%), Gaps = 55/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L  L  EI+ HDD Y++ ++P I D++YDALK+    +   F       DP   L  +
Sbjct: 45  RRLELLRVEIARHDDLYFRKAQPEISDADYDALKQELRELESRFGRRV-PRDPAA-LRDM 102

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      K  H +  LSLEK      +R F   + R    K    I + +EPK DG  
Sbjct: 103 GDDRVSGFPKARHRMRMLSLEKTTTESGVRAFDQALRRL--VKPPAEIAYVVEPKFDGLA 160

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSAC---IRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           I+  YE+G+ V    RG+G  G+DV+A    IR +P  PR+     P ++EVRGEV+++ 
Sbjct: 161 ISATYEEGRLVRLVTRGNGEEGDDVTAAAGRIRTLP--PRLAGAAWPRVVEVRGEVFLTF 218

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG- 253
            +F  +N      GR  +++PRN A G L+ L P D   R L+    GLG      A   
Sbjct: 219 AEFERINRGRRENGRPTFSSPRNLAVGTLKSLEPEDREVRQLDVVFFGLGAIDGHAAPAS 278

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q ++L+ +   G P     R+ ++         E+   RS L + IDG V K+D+   Q 
Sbjct: 279 QTQLLEWIAQWGLPSVEDARRVDSIDDAWRAVQELGGRRSHLAFPIDGAVIKLDDAVGQT 338

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
             G    +PRW I+ K+A  +  TR+  + +Q+GRTG++TPVA LEPV + GA IT ATL
Sbjct: 339 AAGVSEVAPRWAIAFKYAPARVGTRVRGVALQVGRTGVITPVAELEPVALAGARITRATL 398

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   ++             D+RVGD V ++R GE+IP VV +   +R   + PF FP  
Sbjct: 399 HNASEME-----------RSDLRVGDFVWIERMGEIIPAVVAVDTAQRGTVSAPFVFPRD 447

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +VR L+       A  RCT    C A+Q+ +++H+VS +   I GLG   ++ 
Sbjct: 448 CPGCGALLVRALDD------ANWRCTND-DCPARQVRKVEHYVSDEGVGIRGLGAASVEA 500

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +S+     +R   D++TL   + T+ T++             + D+I + R   L R 
Sbjct: 501 LVRSQ----RVREIPDLYTLTAAEVTAHTRLSA------AQAARVVDAIQRSRKAPLRRV 550

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND-DWLSLIRVPLVGDIIAQAI 612
           I  LG+  +G   A +L   +     FA       A  +D   +  +R   V  +     
Sbjct: 551 IAGLGLPGIGPAGANALGARFADLPQFAA------ARESDLQQVEGLRPESVRALATALS 604

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            E  Q        + L +  +  +G       +  +  K++VFTGTL  + R +A E V 
Sbjct: 605 AERTQ--------QLLARLAAAGVGAQSATADAGTLAGKEVVFTGTLPTLSRRRATELVE 656

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + G  V+  ++  T  ++ G NP SKL +A  LGV ++ E + L L +
Sbjct: 657 EAGGRVADRVTAATWRLVAGRNPASKLHQATALGVPVIEEAELLRLAE 704


>gi|315649754|ref|ZP_07902837.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453]
 gi|315274728|gb|EFU38109.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453]
          Length = 670

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 224/720 (31%), Positives = 364/720 (50%), Gaps = 70/720 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI-AHAFPDLARSEDPNGPLN 76
           ++++  L  E++ ++  YY   +P++ D EYDAL  +  A+ A     L     P+ P  
Sbjct: 4   KEKMGKLITELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAETGVTL-----PDSPTQ 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKDDNSI---FFT 129
           ++GGE+        H  P  SL+K  NIE LR +  R+ R    +  K   N +    + 
Sbjct: 59  RVGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPNPCYA 118

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIE 186
           LE K DG  + + Y+ GK V A+ RG+G  GE +   ++ I ++P    L IP     IE
Sbjct: 119 LELKFDGLTLNLTYQDGKLVQASTRGNGAVGEGILPQVKTIKSVP----LTIPYDEGTIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           V+GE  ++    L++ ++      +P  N RNAA+G LR L+P     R LN + + +G 
Sbjct: 175 VQGEGIMN----LSVLEKYNQTAAEPLKNARNAAAGALRNLSPKVTAERKLNAYFYNVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           +  I      EM+  +R     VN  +     F  ++    +++  RS L Y IDG V K
Sbjct: 231 SDGITFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVK 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V +F +++ LG   + PRW +++KF  ++ +T L  +   +GRTG +TP+AR+EPV + G
Sbjct: 291 VTDFRIREALGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             + N TL+N          G + R      +G RV ++R+ +VIP+++  +  E   D 
Sbjct: 351 VTVQNCTLNN---------IGDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEEN--DG 399

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIE 484
           +   FP  CP C   + +           AH  C     C  Q + R+ HF SRDA +IE
Sbjct: 400 EEILFPVECPSCGFPLEQR---------GAHLFCNNKTGCKPQIVARITHFASRDAMDIE 450

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
               +     ++       +R PAD++TL      S  K+E    FG+    NL D+I K
Sbjct: 451 TFSDKTAIQLYEE----LGVREPADLYTLSF---DSLVKLER---FGEKKAQNLLDAIEK 500

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +   L  F+F+LGI + G    + LA +Y       ++++ ++A   ++   L+ +P V
Sbjct: 501 SKERDLASFLFALGIPNTGKSTTKMLADHY-------RDLHRVMAATAEE---LVELPDV 550

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661
           G I+A +I  ++ +P    ++E +L   V        K VSS+     K +V TGTL  +
Sbjct: 551 GGIVADSIAGYFADPFAQASIEKMLSLGVQAQAPEAPKPVSSDSYFSGKTVVLTGTLHLL 610

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720
            R +A E +  LGA V+  +S+KTD++I G+  GSKL KAQQLG+ I+ +EE+F+ LL +
Sbjct: 611 TREEATERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670


>gi|284929444|ref|YP_003421966.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A]
 gi|284809888|gb|ADB95585.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A]
          Length = 682

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 219/712 (30%), Positives = 361/712 (50%), Gaps = 49/712 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L + +   +  Y+  ++ I+ DS YD L R+   +    P+L  S+       +
Sbjct: 7   QKTIIKLRKHLQQANYAYHVLNESIMEDSVYDQLYRQLYNLEQRNPNLISSDSVT---QR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G +  L    V H IP  SLE  +N+++L  +  R  ++ + +++  I +  E KIDG+
Sbjct: 64  VGEKPALHFNSVKHDIPLYSLENAFNLQELEAWENRNQKYLKSQENQLIKYIAELKIDGS 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196
            +++ YE G       RGDG  GED++  IR I +IP  L+L+  P I+ V GE ++  +
Sbjct: 124 ALSLTYENGLLTRGLTRGDGIVGEDITQNIRTIFSIPLHLNLDDPPSIMHVNGEAFLPLD 183

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +F  +N +    G+  +ANPRNAA+G LR+L+   ++ R L FF + L     +  K Q+
Sbjct: 184 EFKRINKQKQKEGKSLFANPRNAAAGTLRQLDSKIVSERKLQFFAYSL-YADNLDIKSQW 242

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L+ ++  GF VN   R   +   + +Y+NE KS +  LPY  DG+V K++   LQK+L
Sbjct: 243 DTLKFLQECGFLVNPYYRLCKSLDTVTNYFNEWKSAKKHLPYMTDGVVIKINSHILQKEL 302

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
               R PRW I+ K+  ++ ST + DI    GRTG +TP+A + PV +GG ++  ATLHN
Sbjct: 303 AYTQRFPRWAIALKYPAEEISTVVEDIIFNTGRTGAVTPMAVMNPVLLGGTIVRKATLHN 362

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L            I +GD V +++AGE+IP+V+ ++   RH   + F     CP
Sbjct: 363 IDRIAQL-----------GICIGDTVTIRKAGEIIPEVIRVLKTLRHHKTKVFQISERCP 411

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S +V   N       A  RC    +C A     L H+ SRDA +I GLG++ +D   
Sbjct: 412 KCNSMLVSFSNE------AVVRCINN-SCPAILKGNLIHWSSRDAVDISGLGEKIIDLLI 464

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            S     SI   +D++ L  ++      + N+   G  S  NL  SI   +  S  + ++
Sbjct: 465 -SNGLVNSI---SDLYHLNFQE------VSNLERMGIKSAENLIKSIESSKTKSWTKVLY 514

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI HVG   A  L + + S Q   Q            + +L+ +  +G  +A +I  +
Sbjct: 515 GLGIHHVGYTTAILLTENFSSVQQLLQA----------PYDTLVTIKGIGKEVAYSIRSW 564

Query: 616 YQNPRNICAVEALLKE----VSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYV 670
           +    N   +  L K      + ++G ++     +I  N   V TG+L  ++R + +  +
Sbjct: 565 FSLEENQKLISELDKNGFVLENKNLGINQNKPDKQIFFNITFVITGSLNTLKRSEIKNLI 624

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              G  V   +++KT+ I+VG+NPGSKL +  +L +  +NE  FL +L+  N
Sbjct: 625 ENFGGKVVNSVTKKTNYILVGENPGSKLAEGMKLNIIRLNETDFLRILKDAN 676


>gi|317014035|gb|ADU81471.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Gambia94/24]
          Length = 656

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 227/699 (32%), Positives = 355/699 (50%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY   +PI+ D+ YD L +   A     P+  ++   N P  K+G        
Sbjct: 18  LSHH---YYNLDEPIVSDAVYDELYQELKAYEEENPNRIQA---NSPTQKVGATATNEFS 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +         F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQNELQAWLQRILKAYPNAS-----FVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            + A  RG+G  GE V+   + I  IP   S+     IE+RGEV I+K DF ALN E + 
Sbjct: 127 LISATTRGNGLEGELVTNNAKHIANIPH--SIAYSGEIEIRGEVIIAKEDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  VDE  +QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVDELDIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++T ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVTKATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + D+V+V R+G+VIPK++  +   R    Q    P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDKVVVIRSGDVIPKIIKPLETYRDGSQQKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ +     I 
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  +A ++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLKKSEAEFLEM---EGFGVEMAHSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   S      ++  SS   NK +V TGTL K ++  AQ  +  LGA +++ +
Sbjct: 557 IRSLFDLLNPKSSDTAEEKQKSSSVFSNKTIVLTGTLSKPRQEYAQ-ILENLGAKIASSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +I G+N GSKL  A++ GV ++NEE+ L  L++
Sbjct: 616 SAKTDFLIAGENAGSKLALAKKHGVSVLNEEELLKRLKE 654


>gi|210134818|ref|YP_002301257.1| NAD-dependent DNA ligase LigA [Helicobacter pylori P12]
 gi|254781345|sp|B6JLJ9|DNLJ_HELP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|210132786|gb|ACJ07777.1| DNA ligase [Helicobacter pylori P12]
          Length = 656

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 226/699 (32%), Positives = 356/699 (50%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY   + I+ D+ YD L +   A     P+  ++   N P  K+G        
Sbjct: 18  LSHH---YYNLDESIVSDAVYDELYQELKAYEEKNPNDIQA---NSPTQKVGATTTTPFS 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +         F   PK+DG  + + Y  GK
Sbjct: 72  KNPHLMRMWSLDDVFNQSELQAWLQRILKVYPNAS-----FVCSPKLDGVSLNLLYHHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE V+   + I  IP  ++ +    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVSATTRGNGLEGELVTNNAKHIANIPHFIAYDGE--IEIRGEVIISKEDFEALNKERLE 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E  +QK+LG   +SP++ 
Sbjct: 243 FGAIQYLSLNKNHQEIEESYHTLIKEREGFFALLDGMVIVVNELGIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++  ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAMVNRATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  +   R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ +     I 
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LA+Y L          N++  +  ++L +      G  +A ++V FY  N   
Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMAHSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  + + ++  SS   NK +V TGTL K ++  AQ  +  LGA +S+ +
Sbjct: 557 IRSLFDLLNPKNSDMAKEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +IVG+NPGSKL  A++ GV ++NEE+ L  L++
Sbjct: 616 SAKTDFLIVGENPGSKLALAKKHGVSVLNEEELLKRLKE 654


>gi|310778043|ref|YP_003966376.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926]
 gi|309747366|gb|ADO82028.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926]
          Length = 677

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 221/697 (31%), Positives = 367/697 (52%), Gaps = 60/697 (8%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF-KVTHSIPTLS 97
           ++ ++ D EYD L +  + I    P++   +D   P  ++G  ++ + F KV H  P LS
Sbjct: 26  NESLVSDIEYDKLLKELEEIEKKHPEI---KDELSPTRQVGSSLSDTKFQKVEHKKPMLS 82

Query: 98  LEKIWNIEDLRKFITRIYRFWQK-KDDNS---IFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           L   +NI+D+  F  RI +   K K+D S     + LE K+DG  I++ Y+ GK V    
Sbjct: 83  LSNTYNIKDVEDFHQRIDKILGKLKEDESKKITDYALELKLDGVSISVHYKNGKLVKGVT 142

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GEDV+  I  I +IP+ L  NI   IE RGE+ +  ++F  LN      G   +
Sbjct: 143 RGDGTVGEDVTENIMEIKSIPKYLKENID--IEARGEIVLPLSEFKKLNQIRYDKGEDLF 200

Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAASG LR+L+   +  R L+ + + L    ++  +   E ++ +  +G       
Sbjct: 201 ANPRNAASGTLRQLDSKIVAERNLDCYFYFLADCDKLGIEKHSESMEFLEKVGLKTTGVC 260

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
              ++   +       ++ R  L Y+ DGLV KV+   L  +LG   +SPRW IS+KF  
Sbjct: 261 DLCSSIEELEDRIRYWENNRGVLDYETDGLVIKVNMVELWDKLGATTKSPRWAISYKFPA 320

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           KQ +T L +I  Q+GRTG +TPVA LE V + G+ +  A+LHN D         +++R  
Sbjct: 321 KQVTTTLKNITWQVGRTGKVTPVAELEEVEVSGSKVKRASLHNFD---------EIIR-- 369

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           +D+++GDRV +++A E+IP+VV ++   R  + +    PS CP C + + R+        
Sbjct: 370 KDVKIGDRVFIEKAAEIIPQVVKVVKEARTGEEKEIMPPSVCPECGTELGREEG------ 423

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           +   RC     C A+   ++++FVSRDA NI GLGK+ ++ F +       I+  +DI+ 
Sbjct: 424 LIDLRCPNE-KCPAKVRGQIEYFVSRDAMNINGLGKKIVEKFIE----IGKIKDVSDIYD 478

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   +     +++++   G  SV NL  SI   +     + ++SLGI HVG  +A  LAK
Sbjct: 479 LHLYKD----ELKSLEKMGAKSVENLLKSIEDSKKREYPKSLYSLGIPHVGKFLASLLAK 534

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL---- 628
                   ++ I+ +   + +D   L+ +  VG  +A+++   ++N + +  +E L    
Sbjct: 535 E-------SKNIDKLAQMSIED---LLEIDGVGKKVAESVYGVFRNKKFLERLEKLKNYG 584

Query: 629 ----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
               +KEV  +     +  + E ++K  + TG L+   R   +EY+  LG    + +S+K
Sbjct: 585 VNFKIKEVEDTA----EFFNEEFKDKTFLATGKLKHFTREGIKEYIESLGGKNLSGVSKK 640

Query: 685 TDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQ 720
            D +IVG+  GSKL+KA++L  VKI+ E +FL + ++
Sbjct: 641 LDYLIVGEKAGSKLKKAEELKTVKILTESEFLEMTEK 677


>gi|148381215|ref|YP_001255756.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 3502]
 gi|153931904|ref|YP_001385590.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. ATCC
           19397]
 gi|153935840|ref|YP_001388996.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. Hall]
 gi|166215576|sp|A7FYL7|DNLJ_CLOB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215577|sp|A5I6Z7|DNLJ_CLOBH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148290699|emb|CAL84829.1| DNA ligase [Clostridium botulinum A str. ATCC 3502]
 gi|152927948|gb|ABS33448.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 19397]
 gi|152931754|gb|ABS37253.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. Hall]
          Length = 664

 Score =  320 bits (820), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 213/704 (30%), Positives = 361/704 (51%), Gaps = 58/704 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +E++ +   YY    P I D EYD LK     I     ++     P  P  ++
Sbjct: 6   EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132
           G ++     K TH     SL+K  N+E L ++  R  +  ++ +  S      + + +  
Sbjct: 62  GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121

Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  L +    +IEV GE 
Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNNHVIEVHGEA 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
            ++K  F    +E     + P  N RN A+G LR L+  +  R  L+ F + +G      
Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  VD+  
Sbjct: 236 FKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIK 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG  +  
Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N D IK            +++++G +VLV+R+ +VIP+++  +V E   +++    
Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESKEIQA 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G  ++ 
Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +  F+  D    I+  AD++ +++ +  +  K      F D    NL D+I   +N  L
Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNSKNCDL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             FI++LGI +VG + A  L    + ++      N  I         L+ VP VG+I+A+
Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F+++ + I  +E LL          E+   +   +K +V TG+L    R + ++ +
Sbjct: 556 SIYDFFEDEKVISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGEIKDKL 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F
Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659


>gi|170761523|ref|YP_001788587.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A3 str. Loch
           Maree]
 gi|254781295|sp|B1L1H3|DNLJ_CLOBM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169408512|gb|ACA56923.1| DNA ligase, NAD-dependent [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 664

 Score =  320 bits (819), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 214/704 (30%), Positives = 360/704 (51%), Gaps = 58/704 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +E++ +   YY    P I D EYD LK     I     ++     P  P  ++
Sbjct: 6   EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132
           G ++     K TH     SL+K  N+E L ++  R  +  ++ +  S      + + +  
Sbjct: 62  GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121

Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  L +    IIEV GE 
Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNNHIIEVHGEA 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
            ++K  F    +E     + P  N RN A+G LR L+  +  R  L+ F + +G      
Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGSE 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   EM+  +R +G P +  +++      +      ++SIR  L YDIDG V  VD+  
Sbjct: 236 FKNYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIREELDYDIDGAVIVVDDIK 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + P+W I++KF  K+ +TRLLD++  +GR+G +TP A LEPV +GG  +  
Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTRLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N D IK            +++++G +VLV+R+ +VIP+++  +  E   +++    
Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VAEESLEESKEIQA 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G  ++ 
Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +  F+  D    I+  AD++ +++ +  +  K      F D    NL ++I   +N  L
Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLINAIQNSKNCDL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             FI++LGI +VG + A  L    + ++      N  I         L+ VP VG+I+A+
Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F+++ + I  +E LL          E+   +   +K +V TG+L    R + ++ +
Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGEIKDKL 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F
Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659


>gi|255595065|ref|XP_002536222.1| DNA ligase, NAD-dependent, putative [Ricinus communis]
 gi|223520412|gb|EEF26161.1| DNA ligase, NAD-dependent, putative [Ricinus communis]
          Length = 491

 Score =  320 bits (819), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 198/534 (37%), Positives = 296/534 (55%), Gaps = 53/534 (9%)

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF- 250
           ++K DF  +N E+ A G +  ANPRNAA+G LR+L+P    +R L F  +G G   E F 
Sbjct: 1   MNKADFALVNAELAAKGEETKANPRNAAAGSLRQLDPKVTASRRLRFLAYGFG-VCEGFE 59

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A  Q E L  +  +GF +++         GI++++  +K+ R+ LP+DIDG+VYKV+  
Sbjct: 60  PADTQEEQLASLVQMGFEISHTNTVVKGAAGILAHFESVKATRADLPFDIDGVVYKVNSK 119

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q +LG  +R+PRW I+ KF  ++A TR + I+ Q+GRTG LTPVARLEPV +GG  +T
Sbjct: 120 KQQDELGWNSRTPRWAIALKFPPEEAVTRCIAIEPQVGRTGPLTPVARLEPVFVGGVTVT 179

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNE          +V R  +DIR+GD V+V+RAG+VIP++V  +   R      + 
Sbjct: 180 NATLHNEQ---------EVHR--KDIRIGDHVIVRRAGDVIPEIVRSLPERRDGTETVYY 228

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + V ++ +       AAHRCTGGL C+ Q+L  + HF SR A +IEGLG+ 
Sbjct: 229 TPAHCPTCGTPVHKEED------TAAHRCTGGLKCADQRLYAITHFASRLALDIEGLGEG 282

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    +    A  I  P+ +F L   Q      I  + G G  S   L  +I + R   
Sbjct: 283 TVTKLVE----AGLIERPSHLFALLPSQ------IAALPGEGKNSAAKLVAAIERTRAPE 332

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI++LGI +VG   A++ A+++LS+  F     + +    D          VG   A
Sbjct: 333 LNRFIYALGIPNVGENSAKNFARHFLSFAAFKAATADELQALED----------VGPTTA 382

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRH 664
            ++  F++N  N   VEAL++ V P      K+V+   +++ L     V TGTL +  R 
Sbjct: 383 ASVRAFFENADNAAEVEALVECVQP------KDVTVSTDSQSLTGLTFVITGTLSR-DRE 435

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  +   G  VS  +S+KT+ ++ G   G+KL KAQ++GV I++E  F  LL
Sbjct: 436 SFKATIEAAGGKVSGSVSKKTNYLLAGAEAGTKLAKAQEMGVTILDEAAFDALL 489


>gi|325002847|ref|ZP_08123959.1| NAD-dependent DNA ligase LigA [Pseudonocardia sp. P1]
          Length = 615

 Score =  320 bits (819), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 187/573 (32%), Positives = 295/573 (51%), Gaps = 32/573 (5%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQAR+  + L  E++ H   YY    P++ D ++D L      +  A P LA    P  P
Sbjct: 7   EQARERHAQLAAEVADHQFRYYVLDAPVVSDGQFDELWHELLGLEDAHPGLAT---PQSP 63

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+GG  +       H    LSL+  ++ +DLR +  R+ R    +   ++ +  E KI
Sbjct: 64  TQKVGGTFSTEFTAHDHLERMLSLDNAFSADDLRTWQERVTR----EVGENLHYLCELKI 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGE 190
           DG  + + YE G    A  RGDG +GED++  +R +  +P  L+      +P ++EVRGE
Sbjct: 120 DGLAVNLLYEGGTLTRALTRGDGRTGEDITLNMRTLGEVPVTLTGTDEFPVPALVEVRGE 179

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
           VY    DF  LN  ++  G++P+ANPRN A+G LR+ +P    +R L    HG+G+    
Sbjct: 180 VYFRLEDFDRLNASLVEAGKEPFANPRNTAAGSLRQKDPRVTASRNLRLICHGIGRRDGF 239

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q +    +   G P++   R       +V +       R  + ++IDG+V KVDE 
Sbjct: 240 TPVTQSQAYDALVAWGLPISPRTRVLRGIEKVVEFVEHWGEHRHDVEHEIDGVVVKVDEV 299

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R PRW I++K+  +QA+TRLLDI + +GRTG +TP A +EPV + G+ + 
Sbjct: 300 ALQRRLGATSRFPRWAIAYKYPPEQATTRLLDIRVNVGRTGRVTPFAVMEPVKVAGSTVE 359

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN D ++         R G  + +GDRV++++AG+VIP+V+  + + R    + F 
Sbjct: 360 MATLHNADEVR---------RKG--VLIGDRVVIRKAGDVIPEVLGPVTDVRDGSERAFV 408

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +V+    K G +    RC    +C AQ  ERL H   R +F+IEGLG +
Sbjct: 409 MPTHCPECGTALVQQ---KAGDV--DRRCPNARSCPAQLRERLFHVAGRGSFDIEGLGYE 463

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                  S      +    D+F+L   +   T    N  G   V+   L  ++   ++  
Sbjct: 464 AAVALLTS----GVLTDEGDVFSLTEDELLRTDLFRNQKGELTVNGRKLLTNLEAAKDRP 519

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
           L R +  L IRHVG   A++LA+ + S +   Q
Sbjct: 520 LWRVLVGLSIRHVGPTAAQALAREFGSMEALEQ 552


>gi|297183498|gb|ADI19628.1| NAD-dependent DNA ligase (contains brct domain type II) [uncultured
           delta proteobacterium HF0770_45N15]
          Length = 655

 Score =  320 bits (819), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 210/684 (30%), Positives = 355/684 (51%), Gaps = 56/684 (8%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAI-AHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
           HD   Y      + D EYD L  + +A+ A     LA       PL +       +    
Sbjct: 16  HD---YYCDVATVPDVEYDGLVSQLNALEAQVGESLANV----SPLLQFAANQQEAFPSR 68

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H+IP LSL  +++ +++ ++   + +       +++ +T E KIDG  I++ YEKG+  
Sbjct: 69  RHAIPMLSLGNLYSEQEILEWDENLRK---PLGVSTLSYTCELKIDGLAISLIYEKGRLA 125

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
            A  RGDG +G++V+A +R IP +P  ++L  P  +EVRGEV++SK+ F  LN       
Sbjct: 126 TAVTRGDGTAGDEVTANLRTIPELP--VALPEPLDLEVRGEVFLSKDAFEKLNQRRATQN 183

Query: 210 RKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
              + NPRNAA+G LR L+ ++++R  L  FV+     S I        L ++  L FPV
Sbjct: 184 EPLFRNPRNAAAGTLRTLDTSEVSRRRLGVFVYAC--VSGIETPQHSAALDQLVKLDFPV 241

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
           N     A +   ++ Y  +  +  S LPY +DG+V KVD +S Q+QLG  A+SPRW ++ 
Sbjct: 242 NPERHFAASITEVLEYCRKWGTHHSELPYAVDGVVLKVDAYSTQRQLGVTAKSPRWAVAC 301

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           KF+ +QA +R+  I++ +GRTG++TP+A ++PV + G ++  ATLHN + ++ L      
Sbjct: 302 KFSTEQAESRIRGIELGVGRTGVITPIALIDPVELNGTMVGRATLHNFEQVRNL------ 355

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
                D+ +GD V +++ GE+IPK+V +  + R P+A P   P  CP C  +V  +    
Sbjct: 356 -----DLHLGDLVTLEKGGEIIPKIVSVARSARFPNALPILPPETCPACDDKVSHE---- 406

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
            G++     CT    C  Q  ER+ HF SR A ++E +G   +    +       +R PA
Sbjct: 407 DGEV--DWLCTNP-DCPDQVRERVLHFCSRRALDVETIGPALVVQLLERG----LVRTPA 459

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D+F L      +   +  +   G  S  N+   + + ++  L   +  LGI +VG + AR
Sbjct: 460 DLFRL------NVEALSQLERMGKKSAENVVSGLERSKHCRLAALLHGLGIPNVGEKTAR 513

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ + + Q         + H       L+ +  +G +IA ++  F+ + R    V+ L
Sbjct: 514 LLARRFGTLQTL-----QTVQHEQ-----LLAIDEIGPVIANSVASFFADSRQQALVDDL 563

Query: 629 LK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L   V P      +  +     K +V TG L +  R   ++ + + GA +++ +S+KTD+
Sbjct: 564 LAVGVCPQEEAILEADNPHFSGKMVVLTGALSE-ARDVWKQRLEEAGANITSAVSKKTDL 622

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNE 711
           ++ G+N GSKLEKA + G+++++E
Sbjct: 623 VLAGENAGSKLEKAHKFGIQVIDE 646


>gi|332671254|ref|YP_004454262.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484]
 gi|332340292|gb|AEE46875.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484]
          Length = 834

 Score =  319 bits (818), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 235/797 (29%), Positives = 373/797 (46%), Gaps = 126/797 (15%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QAR   S L + I      YY    P   D++YDA  R    +   +P L     P  P 
Sbjct: 29  QARHRWSELVERIDADQFAYYVLDAPPSSDADYDARLRELAELEERYPGLV---TPQSPT 85

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG  +       H    LSL+  ++ ED+  +  R  R        +  +  E KID
Sbjct: 86  QRVGGTFSTDFATAAHVQRMLSLDNAFSDEDVAAWADRALRDLGAA---APHYLCELKID 142

Query: 136 GTMITIRY------EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIE 186
           G  I + Y      E  + V AA RGDG +GEDV+  +R I ++P VL  +    P++IE
Sbjct: 143 GLAIALLYQRPRPGEPARLVRAATRGDGRTGEDVTLNVRTIASVPDVLGGDPATHPDVIE 202

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           +RGEV++    F  LN+  +A G+ P+ANPRNAA+G LR+ +P    +R L  + HG+G 
Sbjct: 203 IRGEVFLPVEAFARLNEAQVAAGKAPFANPRNAAAGSLRQKDPRVTASRPLGMYAHGIGA 262

Query: 246 TSEIFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPY 297
                A G     Q ++   +   G P ++  R  +   G+   ++YY E    R  + +
Sbjct: 263 FERGSAGGPGIERQSQVYDLLASWGVPTSSHTRVVDGLDGVREMIAYYGEH---RHDVEH 319

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KVDE  LQ++LG  +R+PRW I++K+  ++  TRLL I++ IGRTG  TP A 
Sbjct: 320 EIDGVVVKVDEIDLQRRLGATSRAPRWAIAYKYPPEEVVTRLLAIELGIGRTGRATPFAV 379

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +EPV + G+ +  ATLHN+D ++            + +RVGD V++++AG+VIP++V   
Sbjct: 380 MEPVFVSGSTVRQATLHNQDVVRA-----------KGVRVGDMVVLRKAGDVIPEIVGPA 428

Query: 418 VNERHPDAQ----PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
              + PD       +  P+ CP C +  +R +      L    RC    +C AQ   R++
Sbjct: 429 --PQAPDDTVERVEWHMPADCPECGT-PLRPMREGDVDL----RCPNAESCPAQVRGRVE 481

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFS-IRIPADIFT-------------------- 512
           H  SR AF+IE LG+       + + P+   +R  AD+F                     
Sbjct: 482 HIGSRGAFDIEALGEVTAAALTQPDVPSTPPLRTEADLFALVGYGPDAPQDERARVRDAS 541

Query: 513 -----------------LQR-------------RQQTSTTKIENILGFGD---------- 532
                            L R             R+Q + +K E      D          
Sbjct: 542 LRTLGAIEVVVRDPETGLPREDEDGNVRRRAPFRRQLTWSKAERARAEADGRELPDWEPS 601

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--EINNIIAH 590
            +   L D ++  +   L R + +L IR+VG   AR+LA+ + S     +  E + + A 
Sbjct: 602 TAARTLLDQLDLAKEKELWRVLVALSIRNVGPTAARALAQEFRSMAALREVVEGDPVAAA 661

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-- 648
                  L  V  VG  IAQ++V+++  P +   V+A             + V+  +E  
Sbjct: 662 ER-----LSGVDGVGPTIAQSLVDWFATPWHAAVVDAWAAAGVRMADTAGEQVARTLEVA 716

Query: 649 -------NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
                     +V TG L++  R +A+E +   G   +  +S+KTD ++VG+N GSK  KA
Sbjct: 717 DEGGTVRGLTVVVTGGLERFSRDEAKEAILSRGGKAAGSVSKKTDFVVVGENAGSKETKA 776

Query: 702 QQLGVKIMNEEQFLFLL 718
           ++LG++I++E  F  LL
Sbjct: 777 RELGLRILDEAGFEALL 793


>gi|113475951|ref|YP_722012.1| NAD-dependent DNA ligase LigA [Trichodesmium erythraeum IMS101]
 gi|123160812|sp|Q112N5|DNLJ_TRIEI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110166999|gb|ABG51539.1| DNA ligase, NAD-dependent [Trichodesmium erythraeum IMS101]
          Length = 774

 Score =  319 bits (818), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 233/803 (29%), Positives = 378/803 (47%), Gaps = 139/803 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            L +EQ  + L    QE  Y    YY   +PI+ D+ YD L R    +   +P L  S+ 
Sbjct: 5   TLEVEQYTQNLREKLQEAGY---SYYVLDQPIMEDAVYDHLLRELQELESQYPQLIVSDS 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--------- 121
           P     ++G +       V H+IP  SLE  +NI++L+ +  R    WQ++         
Sbjct: 62  PT---QRVGEKPATKFVSVKHNIPLYSLENAFNIQELKSWQER----WQRQTLLENQRLT 114

Query: 122 ---------------DDN----------------------SIFFTLEPKIDGTMITIRYE 144
                           DN                      S+ +  E KIDG+ + + YE
Sbjct: 115 LPLRGEVKIKNSIDESDNFSTVNSLAPVITGSNFDEIDLASVDYICELKIDGSALALTYE 174

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALND 203
            G  V  A RGDG  GED++  ++ I +IP  L + N P ++EVRGE ++S N F  +N 
Sbjct: 175 NGLLVRGATRGDGIMGEDITQNVKTINSIPLKLKVDNPPLLVEVRGEAFLSINVFENINA 234

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL----GKTSEIFAKGQYEML 258
           E   +G   +ANPRNAA+G LR+L+   +  R L+FF + L     +++ +    Q + L
Sbjct: 235 EREKIGEIIFANPRNAAAGTLRQLDSKIVAKRRLDFFAYTLYLEENESNFLQFYTQSQCL 294

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + ++ LGF VN   +  ++ + + +YY      R  LPY  DG+V K++  SLQ++LG  
Sbjct: 295 ELLKKLGFKVNPNGQVCSSLNEVEAYYQYWDKQRENLPYLTDGVVVKLNSLSLQEKLGFT 354

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            + PRW I+ K+  ++  T +  + +Q+GRTG +TPVA L+PV + G  +  A+LHN D 
Sbjct: 355 QKYPRWAIALKYPAEEIPTIVQGVTVQVGRTGAITPVAELKPVQLAGTTVQRASLHNSDR 414

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           +  LD           + +GD V+V++AGE+IP+VV ++   R   AQ F  P+ CP C 
Sbjct: 415 LAELD-----------LHIGDTVIVRKAGEIIPEVVRVLPELRPKKAQRFQMPTHCPECS 463

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +++  N       A  RC    +C A     L H+ SR A +I GLG++ +     S 
Sbjct: 464 QPLIKPRNE------AVTRCIN-TSCPAILRGSLAHWASRAALDINGLGEKLVQQLVNS- 515

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++  AD++ L     TS  ++      G  S   L +++   +     R ++ LG
Sbjct: 516 ---GLVKSVADLYNLTMEDLTSLERM------GKKSANKLIEAMGTSKAQPWRRVLYGLG 566

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQE----------INNIIAHNNDDWLSLIRVPLVGDII 608
           IRHVG   A  L + + +    +Q           I   IA   + W    RVP   +++
Sbjct: 567 IRHVGTVNAELLTQKFPTVAQLSQAKATDIETVHGIGPEIAQYVEQWF---RVPANQNLV 623

Query: 609 AQ------------------AIVEFYQNPRNICA---------VEALLKEVS-PSIGRHE 640
            +                   + E     +N+ A         +E L++ +    +    
Sbjct: 624 ERLKIAGVTMETKDSTSGMAKLTETVLAIQNLAARQNLVARQNLENLVERLKIAGVTMET 683

Query: 641 KNVSSEI--------ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           K+ +S++          K  V TGTL  ++R +A+  +   G  V++ +S KTD I+VG+
Sbjct: 684 KDSTSDVVEVQSGLLRGKTFVLTGTLPTMRRDEAKNLIQNAGGKVTSSVSSKTDFIVVGE 743

Query: 693 NPGSKLEKAQQLGVKIMNEEQFL 715
           + GSKLEKA++LGVK ++E + L
Sbjct: 744 DGGSKLEKAKKLGVKELSESELL 766


>gi|313836700|gb|EFS74414.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA2]
 gi|314929893|gb|EFS93724.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL044PA1]
 gi|314972321|gb|EFT16418.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA3]
 gi|328907750|gb|EGG27514.1| NAD-dependent DNA ligase LigA [Propionibacterium sp. P08]
          Length = 740

 Score =  319 bits (818), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 236/763 (30%), Positives = 371/763 (48%), Gaps = 93/763 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR   + L Q I    D YY    P + D+ YD L      +    P+L RS  P+ P 
Sbjct: 19  EARHRWTELAQRILDAQDAYYANDAPTMSDAAYDQLMVELKKVEDDHPEL-RS--PDSPT 75

Query: 76  NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            ++G    ++ F  V H    LSL+ I+  ++L ++++R+     K       F  E KI
Sbjct: 76  QRVGAPQRVTDFAPVEHLERLLSLDNIFTRDELSEWMSRVVAAVGKIPG----FLCELKI 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + Y  G+ +  A RGDG  GEDV+A +R I  IP+ L+ + +P ++EVRGEV+ 
Sbjct: 132 DGLAVDLVYRDGQLISGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFF 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
              DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G        
Sbjct: 192 PVADFADLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTESRPLSMIVHGIGAVEGHDFP 251

Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q     K+   G PV+     V  A+  H  V+++ E    R    + IDG+V KVD+ 
Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVENADEVHDFVTHWGES---RDEASHQIDGVVIKVDDV 308

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ + 
Sbjct: 309 CLQRKLGVTSRAPRWAIAYKYPPEEVNTELLDIRVSVGRTGRVTPYGVMRPVTVAGSTVE 368

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R    + FS
Sbjct: 369 MATLHN---------AFEVKRKG--VLLGDTVVLRKAGDVIPEILGPVVELRDGSEREFS 417

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + +  +   K G      RC     C +Q  ER+    SR A +IE LG +
Sbjct: 418 MPDRCPSCGTELAYE---KDGD--KDLRCPNAKGCPSQLRERVFGLASRGALDIEALGWE 472

Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520
                   E     D   +  +P          A +F LQ          RR++ S    
Sbjct: 473 AAIALTDPENQRPQDEEAAEGLPERQTAVLSSEAGLFDLQPDDLAGVKVWRRRKVSGKLS 532

Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
                    T            +   ++D + K ++  L R + +L IRHVG   AR+LA
Sbjct: 533 PWQLEPYFFTKATAKKPSVPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-----VEFYQNPRNICAVE 626
            ++ S +   +     +A           V  VG+IIA+++     VE++Q   +  A  
Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFDVEWHQEIVSRWAAA 642

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
                V  +  R E    + ++   +V TG+L+   R +A+E +   G   +  +SRKTD
Sbjct: 643 G----VRMADDRDEAPEQT-LKGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTD 697

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ---QYNTTLR 726
            ++VG+N GSK  KA+ LG  I++E  F +LL    Q  TT+R
Sbjct: 698 YVVVGENAGSKETKARDLGRPILDEAGFRYLLDNGPQGVTTVR 740


>gi|168183572|ref|ZP_02618236.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf]
 gi|237796711|ref|YP_002864263.1| NAD-dependent DNA ligase LigA [Clostridium botulinum Ba4 str. 657]
 gi|254781290|sp|C3KUA1|DNLJ_CLOB6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|182673387|gb|EDT85348.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf]
 gi|229263356|gb|ACQ54389.1| DNA ligase, NAD-dependent [Clostridium botulinum Ba4 str. 657]
          Length = 664

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 214/704 (30%), Positives = 359/704 (50%), Gaps = 58/704 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +E++ +   YY    P I D EYD LK     I      +     P  P  ++
Sbjct: 6   EKMKKLVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKETQVTL---PYSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132
           G ++     K TH     SL+K  N+E L ++  R  +  ++ +  S      + + +  
Sbjct: 62  GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121

Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  L +    +IEV GE 
Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNNHVIEVHGEA 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
            ++K  F    +E     + P  N RN A+G LR L+  +  R  L+ F + +G      
Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   EM+  +R +G P +  +++      +      ++SIR  L YDIDG V  VD+  
Sbjct: 236 FKSYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIREELDYDIDGAVIVVDDIK 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG  +  
Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N D IK            +++++G +VLV+R+ +VIP+++  +V E   +++    
Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESKEIQA 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G   + 
Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSGKT 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +  F+  D    I+  +D++ +++ +  +  K      FGD    NL D+I   +N  L
Sbjct: 456 AEQLFERLD----IKSISDLYKIRKEELLTLDK------FGDKKSQNLIDAIENSKNCDL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             FI++LGI +VG + A  L    + ++      N  I         L+ VP VG+I+A+
Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F+++ + I  +E LL          E+   +    K +V TG+L    R + ++ +
Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGEIKDKL 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F
Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659


>gi|87123447|ref|ZP_01079298.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp.
           RS9917]
 gi|86169167|gb|EAQ70423.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp.
           RS9917]
          Length = 694

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 225/730 (30%), Positives = 355/730 (48%), Gaps = 67/730 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S E+AR EL +L    ++    YY    P + D  YD L R    +  A P L     P+
Sbjct: 5   SGERAR-ELRTLLNRAAH---AYYVLDAPEMEDPVYDRLYRELVELEQADPSLC---SPD 57

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG        V H I  LSL+  +NI +L  +  R+ R   ++          P
Sbjct: 58  SPTQRVGGPPAAGFQSVRHRIGLLSLDNAFNIGELEAWYARLLRVLDREPGAGAPLPALP 117

Query: 133 -----KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186
                KIDG  + + YE+G  V AA RGDG  GE ++A +R I  +P  L L   PE +E
Sbjct: 118 MVGELKIDGNALALSYEQGVLVRAATRGDGEQGEAITANVRTIGAVPLRLQLEQPPEWLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-- 243
           VRGE +I    F A+N E  A G   +ANPRNA +G LR+L+P  +  R L+FF + L  
Sbjct: 178 VRGEAFIPDGTFSAINAEREARGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHL 237

Query: 244 ------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
                 G         Q+E LQ ++  GF VN       +   +  ++ + +  R  LPY
Sbjct: 238 PEGWQAGAGDPARPSSQWESLQWLKRAGFKVNPNAELLPSLAAVEGFFAQWQEGRKALPY 297

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
             DG+V K+++  LQ   G   ++PRW I+ K+  ++A ++LL +  Q+GRTG++TPVA 
Sbjct: 298 ATDGVVVKLNDLRLQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLTCQVGRTGVVTPVAE 357

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
            E V + G  ++ ATLHN D +  L           D+   D ++V++AGE+IP+VV ++
Sbjct: 358 FEAVPLAGTSVSRATLHNADRLAEL-----------DLHADDTIVVRKAGEIIPEVVRVL 406

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R  +A     P  CP C S +VR+         AA RC    +C A     L+H+VS
Sbjct: 407 TELRPANAARLELPHTCPECGSELVREEGE------AATRCVNS-SCPAILRGALRHWVS 459

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           + A +++GLG + ++      D      I AD++ L      S  ++      G  S  N
Sbjct: 460 KGALDVDGLGSKLIEQLV---DRGLVSSI-ADLYRLDGALLASLERM------GQKSADN 509

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  ++   +     R ++ LGI HVG   A++LA  + S  + A    +          +
Sbjct: 510 LVAALAASKAQPWHRQLYGLGIHHVGEVNAKALAAAFPSAADLAAAAADHAD-------A 562

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---------SEIE 648
           +  V  +G  IAQ++ +++    N+  + A L+ +  S+   E+ +          +++ 
Sbjct: 563 ITAVFGIGAEIAQSLQQWFATAANLNLL-AELERLGFSLSSSEEELQAAAERSAASAQLS 621

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            +  V TGTL  + R +A+E +   G  VS  +S+KT  ++ G+  GSKL KA+ LGV +
Sbjct: 622 GQTFVLTGTLPSLSRSQAKELIEAAGGKVSGSVSKKTSYVVAGEEAGSKLSKAESLGVPV 681

Query: 709 MNEEQFLFLL 718
           ++E     LL
Sbjct: 682 LDEAGLQALL 691


>gi|33519955|ref|NP_878787.1| DNA ligase [Candidatus Blochmannia floridanus]
 gi|81666906|sp|Q7VRU2|DNLJ_BLOFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33504301|emb|CAD83193.1| DNA ligase [Candidatus Blochmannia floridanus]
          Length = 594

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 202/618 (32%), Positives = 323/618 (52%), Gaps = 51/618 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + ++Y +  YY  S+  + D EYD L      +   +P L         ++ +     
Sbjct: 11  LRERLNYLEYLYYVKSESKVSDEEYDILLEELRQLEFKYPYLITKSSSTQSISNVCDN-- 68

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKD--DNSIFFTLEPKIDGTMIT 140
            SL ++ H  P LSL  I +   L  F  RI Y+     +   N I +  E KIDG  ++
Sbjct: 69  -SLNRIRHQKPMLSLNSIRDKSQLLLFDKRIKYKLSNHYNINQNLIVYCCELKIDGVALS 127

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKN 196
           I Y++GK V+AA RGDG  GE+V+  + AI +IP+ L  N    +P+++E+RGE++ISK 
Sbjct: 128 ILYKQGKLVHAATRGDGKIGENVTKNVNAIDSIPKNLKKNNNEILPDLLEIRGEIFISKL 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYLNFFVHGLGKTSEI--FAK 252
            F  LN EM++ G+K ++N RNAASG LR+L+P  T++ R L F  +G+   + +     
Sbjct: 188 SFSKLNQEMLSSGKKVFSNARNAASGSLRQLDPHVTEL-RSLVFCCYGISYYAGLKQLPN 246

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +  L+     G  +NN ++  +    ++ YYN ++ IRS L Y IDG+V K+D    Q
Sbjct: 247 SHWGRLKLCNRWGLSINNYIQIVSGIDPVLEYYNYVRKIRSELEYQIDGIVIKIDNCIYQ 306

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            QLG   R+P W +++KF  +   T+L D+  ++GRTG++TP+A + PV IG  +I    
Sbjct: 307 DQLGCGFRAPNWAVAYKFPAELKLTKLNDVVFKVGRTGLITPIAYINPVVIGNVIIKKVN 366

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +HN + +K L           ++ +GD V+V+R+G+VIPK++ II+  R  +A+    P 
Sbjct: 367 MHNVNEVKRL-----------NLMIGDTVIVQRSGDVIPKILKIILENRVDNAKFIKIPE 415

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           FCP C S +++  + K+  L    RC   L C AQ+   LKHF SR A NI+G+G + ++
Sbjct: 416 FCPSCGS-ILKVEDNKSSVL----RCLAKLTCLAQRKSALKHFASRKAMNIQGMGSRVIN 470

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                 D    I  P D F+L + +     +      +G+ S   L  SI   + I+L  
Sbjct: 471 QLV---DKGL-ICTPVDFFSLSKEKLLCLDR------YGEKSAERLLQSILIAKEITLSA 520

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGI  VG  ++  LA  Y + +N            N D  S +++  +G I A  I
Sbjct: 521 FIYALGIPGVGESVSNKLAYMYRTIENLM----------NADLQSFLQLKFIGKIAAMNI 570

Query: 613 VEFYQNPRNICAVEALLK 630
             F     N   ++ L++
Sbjct: 571 YSFLHQSDNYNNIQGLIR 588


>gi|255526475|ref|ZP_05393386.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
 gi|296184848|ref|ZP_06853259.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
 gi|255509857|gb|EET86186.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
 gi|296050630|gb|EFG90053.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
          Length = 669

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 212/722 (29%), Positives = 366/722 (50%), Gaps = 70/722 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I+  ++++  L +E++ +   YY    P + D EYD            + +L + E   
Sbjct: 3   TIDTKKEQIEKLVEELNKYAQEYYLLDNPSVSDKEYDL----------RYDELLKLEKET 52

Query: 73  G------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR------IYRFWQK 120
           G      P  ++G  +     K TH     SL+K   ++ +  +  R       Y    +
Sbjct: 53  GIILPYSPTQRVGDNILKEFQKYTHKGKLWSLDKSQTVQGIIDWHVRNKKAVDDYNSTHE 112

Query: 121 KDDNSIFFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
           +    + + +  K DG  I   Y E G  + AA RG G  GED++A  R I ++P  L +
Sbjct: 113 EKLPQLEYVITKKFDGLTINCTYDENGILIKAATRGTGEVGEDITAQARTIMSLP--LKI 170

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNF 238
           N   +IEV GE  +++  F   N         P  N RN A+G LR LN  +  R  L+ 
Sbjct: 171 NNSNVIEVHGEAIMTREAFEEYNKSAAV----PLKNLRNGAAGALRNLNIKETARRKLSA 226

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F + +G       K  +EM+  ++ +GFP++N ++  ++   I +    ++ IRS L YD
Sbjct: 227 FFYDVGYNEGAPFKTYFEMMNFIKNMGFPLDNYIKICSSIEEIENELKYVEEIRSELNYD 286

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V  +++   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G +TP A L
Sbjct: 287 IDGVVIAINDMKTREILGYTIKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVTPTAIL 346

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G  +  ATL+N D IK            +++R+G  V V+R+ +VIP+++  +V
Sbjct: 347 EPVELAGVTVKRATLNNMDDIK-----------RKEVRIGCSVFVRRSNDVIPEIMG-VV 394

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +    +     P  CP C S +V+D           + C   L+C  Q ++ + HF SR
Sbjct: 395 QDTLEGSIEIQAPEKCPYCDSELVQD--------GVHYFCDNTLSCKPQMVKSIVHFGSR 446

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +A NIEG  ++  +  F+       I+   D++ +++       K      F +    NL
Sbjct: 447 EAMNIEGFSEKTAEQLFEK----LEIKSIPDLYRIKKEDLMQLDK------FAEKKAQNL 496

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            ++I K +N SL  FI++LGI ++G + A  L K + S       ++NII  + ++   L
Sbjct: 497 VNAIEKSKNCSLASFIYALGIPNIGKKTATDLVKNFKS-------LDNIIQSSEEE---L 546

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           + +  VG+I+A++I+EF+   + I ++  LL+     I   E+   S   +K +V TG+L
Sbjct: 547 VSIQDVGEIVAKSIIEFFNEDKIINSINELLELGVKPIFEEEEVSKSLFSDKTVVVTGSL 606

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +   R   +E +  +GA VS  +S+KTD ++ G   GSK +KA +LGVKI+NEE+F  +L
Sbjct: 607 ENYTRTTIKEKLQSVGAKVSGSVSKKTDYVLAGKEAGSKYDKALELGVKIINEEEFEKML 666

Query: 719 QQ 720
            +
Sbjct: 667 SK 668


>gi|304372912|ref|YP_003856121.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis HUB-1]
 gi|304309103|gb|ADM21583.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis HUB-1]
          Length = 673

 Score =  318 bits (814), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 224/708 (31%), Positives = 377/708 (53%), Gaps = 53/708 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG- 73
           +QA+K++  L Q++   +  Y+    PI+ D  YD    +   +   +  L   E+ N  
Sbjct: 13  KQAKKQIEELRQKLHLWNHHYFDLDIPIVDDLVYDQELNKLKKLEKKYFYLFTLEENNAS 72

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G +++    K+ HS P LSL K +++E+L+KF  +  +     D+N+ F+ +EPK
Sbjct: 73  PTQIVGAKVDERFQKIKHSQPMLSLNKAYSLEELKKFAQKAIKI----DENASFY-VEPK 127

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEIIEVRGEV 191
           IDG  I++ Y++GKF  A  RGDG +GEDVS  I  I    +P+  S+N  + IE+RGEV
Sbjct: 128 IDGISISLHYKQGKFTQAVTRGDGTTGEDVSHNIENIDAKYVPK--SINYFDDIEIRGEV 185

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           ++    F  +N E   + +  + NPRNAA+G LRRL+  ++    L  FV+ +       
Sbjct: 186 FLDLESFKNMNLEQARLEKPLFLNPRNAAAGQLRRLDSKSNKLANLKVFVYQVVNPELHN 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E +Q ++ LGF  NN  +     H       E++   + L Y+IDG+V KV+EF 
Sbjct: 246 LATVEESIQFLQTLGFNTNNLGQHKANIHQSYQLIQEIQEKENKLNYEIDGVVIKVNEFK 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L  +LG  ++ P   I+ KF++K   T+L  I   +GRTG +T  A LEPV + G+ I+ 
Sbjct: 306 LYDELGTTSKFPHSAIAFKFSDKVVQTKLKHIFATVGRTGKITYNAVLEPVLLQGSTISA 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN +YIK L            I     V +K+AGE+IP+V+  +      +   F  
Sbjct: 366 ATLHNYNYIKDL-----------AINTNSMVYIKKAGEIIPQVIQSV---EKFEKTNFEK 411

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C S ++   + +TG       C     C   QL ++ HF S++  +I+ LG+++
Sbjct: 412 ITNCPECNSDLI---DSETG---IDQFCINP-NCLGIQLRKIIHFCSKEGLDIKDLGEKK 464

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F+   D      IP DIF    R  T   +I  +  F   S+  L ++I K ++ +L
Sbjct: 465 IELFW---DQNLIRSIP-DIF----RLATKIEEISKLKSFQQKSILKLINAIEKAKHTTL 516

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ IF+LGI+H+G + A+ L          AQ+++N+      ++ + +    +G+   +
Sbjct: 517 DKLIFALGIKHIGQKTAKML----------AQKVDNLEQLKTFNFDTFLEDKDIGEKTVE 566

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  +++N  N+  +  L+ +V+  I + E+  S+ +EN   V TGTL +  R + +  +
Sbjct: 567 SLKNYFKNEANLQIINELI-QVNFEIIK-EETYSNILENLSFVITGTLSR-SRSQIELII 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            Q    VS+ +S+ T  +I+G+N GSK +KA+ LGVKI++EE+F  LL
Sbjct: 624 LQNKGKVSSSVSKNTSYLILGENGGSKEDKARNLGVKILSEEEFFKLL 671


>gi|330723500|gb|AEC45870.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis MCLD]
          Length = 673

 Score =  318 bits (814), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 224/708 (31%), Positives = 376/708 (53%), Gaps = 53/708 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG- 73
           +QA+K++  L Q++   +  Y+    PI+ D  YD    +   +   +  L   E+ N  
Sbjct: 13  KQAKKQIEELRQKLHLWNHHYFDLDIPIVDDLVYDQELNKLKKLEKKYFYLFTLEENNAS 72

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G +++    K+ HS P LSL K +++E+L KF  +  +     D+N+ F+ +EPK
Sbjct: 73  PTQIVGAKVDERFQKIKHSQPMLSLNKAYSLEELEKFAQKTIKI----DENASFY-VEPK 127

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEIIEVRGEV 191
           IDG  I++ Y++GKF  A  RGDG +GEDVS  I  I    +P+  S+N  + IE+RGEV
Sbjct: 128 IDGISISLHYKQGKFTQAVTRGDGTTGEDVSHNIENIDAKYVPK--SINYFDDIEIRGEV 185

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           ++    F  +N E   + +  + NPRNAA+G LRRL+  ++    L  FV+ +       
Sbjct: 186 FLDLESFKNMNLEQARLEKPLFLNPRNAAAGQLRRLDSKSNKLANLKVFVYQVVNPELHN 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E +Q ++ LGF  NN  +     H       E++   + L Y+IDG+V KV+EF 
Sbjct: 246 LATVEESIQFLQTLGFNTNNLGQHKANIHQSYQLIEEIQEKENKLNYEIDGVVIKVNEFK 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L  +LG  ++ P   I+ KF++K   T+L  I   +GRTG +T  A LEPV + G+ I+ 
Sbjct: 306 LYDELGTTSKFPHSAIAFKFSDKVVQTKLKHIFATVGRTGKITYNAVLEPVLLQGSTISA 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN +YIK L            I     V +K+AGE+IP+V+  +      +   F  
Sbjct: 366 ATLHNYNYIKDL-----------AINTNSMVYIKKAGEIIPQVIQSV---EKFEKTNFEK 411

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C S ++   + +TG       C     C   QL ++ HF S++  +I+ LG+++
Sbjct: 412 ITNCPECNSDLI---DSETG---IDQFCINP-NCLGIQLRKIIHFCSKEGLDIKDLGEKK 464

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F+   D      IP DIF    R  T   +I  +  F   S+  L ++I K ++ +L
Sbjct: 465 IELFW---DQNLIRSIP-DIF----RLATKIEEISKLKSFQQKSILKLINAIEKAKHTTL 516

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ IF+LGI+H+G + A+ L          AQ+++N+      ++ + +    +G+   +
Sbjct: 517 DKLIFALGIKHIGQKTAKML----------AQKVDNLEQLKTFNFDTFLEDKDIGEKTVE 566

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  +++N  N+  +  L+ +V+  I + E+  S+ +EN   V TGTL +  R + +  +
Sbjct: 567 SLKNYFKNEANLQIINELI-QVNFEIIK-EETYSNILENLSFVITGTLSR-SRSQIESII 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            Q    VS+ +S+ T  +I+G+N GSK +KA+ LGVKI++EE+F  LL
Sbjct: 624 LQNKGKVSSSVSKNTSYLILGENGGSKEDKARNLGVKILSEEEFFKLL 671


>gi|4235378|gb|AAD13192.1| NAD-dependent DNA ligase [Thermus filiformis]
          Length = 537

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 190/520 (36%), Positives = 294/520 (56%), Gaps = 47/520 (9%)

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           FP+    + P+ P  ++G       F+ V H     SL+  +  E++  F  R+ R   +
Sbjct: 2   FPEF---KSPDSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALGR 58

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K      +T+E K+DG  + + YE+G  V+ A RGDG  GE+V+  +  IPTIPR L   
Sbjct: 59  K--RPFLYTVEHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLK-G 115

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LN 237
           +P+ +EVRGEVY+    FL LN+E+   G K + NPRNAA+G LR+ +P    +      
Sbjct: 116 VPDRLEVRGEVYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRAT 175

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           F+  GLG   E   K QYE+L  ++  GFPV +G  +A    G+   Y    + R  LP+
Sbjct: 176 FYALGLG-LEESGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPF 234

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           + DG+V K+D+ +L ++LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  
Sbjct: 235 EADGVVVKLDDLALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGV 294

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV I G+ ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++
Sbjct: 295 LEPVFIEGSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVL 343

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R  + +P  +P  CP C  R+V     K GK+   HRC   L C A++ E ++H+ S
Sbjct: 344 KERRTGEERPIRWPETCPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYAS 394

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVS 534
           R A +IEGLG++ ++   +       +R  AD++ L++         E++LG    G+ S
Sbjct: 395 RKAMDIEGLGEKLIERLLEK----GLVRDVADLYHLRK---------EDLLGLERMGEKS 441

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
             NL   I + ++  LER +++LG+  VG  +AR+LA+ +
Sbjct: 442 AQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRF 481


>gi|208434535|ref|YP_002266201.1| DNA ligase [Helicobacter pylori G27]
 gi|254781346|sp|B5Z6Y6|DNLJ_HELPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|208432464|gb|ACI27335.1| DNA ligase [Helicobacter pylori G27]
          Length = 658

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 227/699 (32%), Positives = 359/699 (51%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY   + I+ D+ YD L +   A     P+  ++   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDESIVSDAVYDELYQELKAYEEKNPNDIQA---NSPTQKVGATATNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQSELQAWLQRILKTYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE V+   + I  IP  ++ +    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVSATTRGNGLEGELVTNNAKHIANIPHFIAYDGE--IEIRGEVIISKEDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E ++QK+LG   +SP++ 
Sbjct: 243 FSAIQYLNLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+I  ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMINRATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + D+V+V R+G+VIPK++  +   R    Q    P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDKVVVIRSGDVIPKIIKPLETYRDGSQQKIMRPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ +     I 
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          N++  +  ++L +      G  + +++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMVRSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  +   ++  SS   NK +V TGTL K ++  AQ  +  LGA +++ +
Sbjct: 557 IRSLFELLNPKNSDMAEEKQESSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKITSSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++
Sbjct: 616 SAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKK 654


>gi|255321406|ref|ZP_05362566.1| DNA ligase, NAD-dependent [Campylobacter showae RM3277]
 gi|255301559|gb|EET80816.1| DNA ligase, NAD-dependent [Campylobacter showae RM3277]
          Length = 647

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 223/690 (32%), Positives = 348/690 (50%), Gaps = 76/690 (11%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE----DPNGPLNKIGGEMNLSLFKV 89
            YY    PI  D EYD L        H   +  R+         P  ++GGE++    K 
Sbjct: 19  AYYTDDAPIATDEEYDELY-------HKVLEFERANLGEISMFSPTKRVGGEVSEGFVKA 71

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H     S+E I++ ++L  ++ R        D   + F L+PK DG  + + YE G  V
Sbjct: 72  RHGARMWSMEDIFSFDELLAWLKR-------GDKEGLEFALQPKFDGASLNLLYENGALV 124

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
            A  RGDG +GEDV++  + I  IP  L +     IE+RGEV I+KNDF  +N      G
Sbjct: 125 RAITRGDGITGEDVTSNAKVIKNIP--LQIAYSGRIEIRGEVVIAKNDFDEINFARAQRG 182

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
               +NPRNAA+G LR+L+     +R L F   G G+ + +  +   +M+  +   GF  
Sbjct: 183 ESQLSNPRNAAAGSLRQLDSAVTASRRLRFKPWGYGEQN-LGLETYSQMMDFIYSQGFER 241

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
               +   +   I   Y ++ + R + P+ +DGLV +V   +  ++LG   + P++M+++
Sbjct: 242 EEFFKICRSAEQIEEAYKQLVAQRDSKPFMMDGLVVRVQSIAASEELGYTEKFPKFMVAY 301

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           KF   + +TRLLD+  Q+GR+G++TPV  LEPVNI GA++ +ATLHN D I+ L      
Sbjct: 302 KFPAIEKTTRLLDVAFQVGRSGVVTPVGVLEPVNIDGAIVKSATLHNFDEIERL------ 355

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
                 ++ GD + + R+G+VIPK+  +    R     P   P  CP+C S ++ +    
Sbjct: 356 -----GVQKGDFISIIRSGDVIPKITGVFKQRRDGSQTPIERPHECPVCGSMLLDE---- 406

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
            G  V   +C   L C A+ +  L HF S+   NI+GLG   ++  F++       +I A
Sbjct: 407 -GVFV---KCQ-NLECKARVINSLIHFASKKCLNIDGLGDAIVNQLFEA---GLVAKI-A 457

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           DI+ L      +   +  + GF D  + NL  +I   R  +L  FI SLGI H+G   A+
Sbjct: 458 DIYEL------TAQDLARLEGFKDKKIANLLGAIEASRTPALHSFIASLGIEHIGEVAAK 511

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV---GDIIAQAIVEFYQ-NPRNICA 624
            +A+ Y   QN+ +             LS   V  +   G+ +A++  EF Q N +N+  
Sbjct: 512 KIAQIYP--QNWRE-------------LSFGEVAAIEGFGEAMAESYAEFMQVNRQNL-- 554

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
            + +L+ VSP     E   S+ I  K  V TGTL K  R + +  +   GA VS  +S+K
Sbjct: 555 -DEILRFVSPQAQSFETKQSA-ISGKTFVITGTLSK-GRDEFKRVLEVNGAKVSGSVSKK 611

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TD ++ GD  GSKL+KA++LGVK + E++ 
Sbjct: 612 TDFVLYGDEAGSKLDKARELGVKAITEDEL 641


>gi|307637302|gb|ADN79752.1| NAD-dependent DNA ligase [Helicobacter pylori 908]
 gi|325995893|gb|ADZ51298.1| DNA ligase [Helicobacter pylori 2018]
 gi|325997488|gb|ADZ49696.1| NAD-dependent DNA ligase [Helicobacter pylori 2017]
          Length = 656

 Score =  317 bits (812), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 228/699 (32%), Positives = 358/699 (51%), Gaps = 68/699 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY   + I+ D+ YD L +   A     P+  ++   N P  K+G        
Sbjct: 18  LSHH---YYNLDESIVSDAVYDELYQELKAYEEENPNHIQA---NSPTQKVGATATNEFS 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE V+   + I  IP  ++ N    IE+RGEV I+K DF ALN E + 
Sbjct: 127 LVSATTRGNGLEGELVTNNAKHIANIPHSIAYNGE--IEIRGEVIIAKEDFDALNKERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E  +QK+LG   +SP++ 
Sbjct: 243 FSTIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELDIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++  ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R    Q    P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMHPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LAKY L          +++  +  ++L +      G  +A ++V FY  N   
Sbjct: 510 GKGASKTLAKYGL----------HVLEKSEAEFLEM---EGFGVEMAHSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   S      ++  SS   +K +V TGTL K ++  AQ  +  LGA +++ +
Sbjct: 557 IRSLFDLLNPKSSDTTEEKQKSSSVFSDKTIVLTGTLSKPRQEYAQ-MLENLGAKIASSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKE 654


>gi|254458916|ref|ZP_05072339.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1]
 gi|207084187|gb|EDZ61476.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1]
          Length = 653

 Score =  317 bits (811), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 211/702 (30%), Positives = 365/702 (51%), Gaps = 80/702 (11%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-------GPLNKI 78
           ++++ +   YY    PI  D  YD L          + ++ R E+ N        P  ++
Sbjct: 11  EQLNLYSHHYYVLDDPITTDEVYDKL----------YHEVVRFEENNKNAVLYSSPSQRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G  ++    K +H     SLE I++ E L K++T+ Y+      D++I F  EPK DG  
Sbjct: 61  GDAVSSGFTKASHLSRMWSLEDIFDSEGLEKWLTKTYKL-----DSNISFYCEPKFDGAS 115

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G+ V    RGDG  GE ++  ++ I +IP  L++   E IE+RGEV I K++F
Sbjct: 116 LNLVYENGELVQGITRGDGSVGELITQNVKTIRSIP--LTIAHKERIEIRGEVVIFKDEF 173

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N+  +  G   +ANPRNAA+G LR+L+ +   +R L F  +G+G+ S      +Y++
Sbjct: 174 DKINEARLKAGEAVFANPRNAAAGSLRQLDSSITASRNLVFLPYGVGEDSL-----EYKL 228

Query: 258 LQKMRC----LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           L         LGF           +  I + Y  MK+ R + P  +DG+V KV+E + Q 
Sbjct: 229 LSDKMAYIYELGFRKPPASSTCKGYDEIEAIYEVMKNDRDSYPMMLDGMVIKVNEIASQI 288

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            +G   ++PR+ +++KF   +  T +  I +Q+GR+G +TPVA++EP +I G ++  ATL
Sbjct: 289 DMGYTVKNPRFSVAYKFPAVEKITTIRAIVLQVGRSGAVTPVAQVEPTDIDGVVVERATL 348

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I             +DIR+ D+V++ R+G+VIPK++ ++ +ER     P+  P+ 
Sbjct: 349 HNFDEID-----------RKDIRLNDKVIILRSGDVIPKIIKVLTHERDGSEVPYERPTL 397

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S ++ +     G L+   +C   L C A+ +  + +F S+   NI+GLG + ++ 
Sbjct: 398 CPVCDSELLDE-----GVLL---KCQ-NLECEARVVNSIIYFASKPCLNIDGLGNKIVEA 448

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F S      ++   D+F L      +  K+  + GF +    NL +S+   +     RF
Sbjct: 449 LFVSG----LVKSVVDLFDL------TLDKLLALEGFKEKKSQNLLNSLEAAKGCDYWRF 498

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I SLGI HVG   +++L+      +NF     +           ++    +G+ +A++++
Sbjct: 499 INSLGIEHVGEVASKTLS------ENFGSSFIDATKE------EIVACDGIGEEMAESVL 546

Query: 614 EFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           EF + N   I  ++ +LK + P   +  + V +  + K  V TGT+ +  R   +E + +
Sbjct: 547 EFVRVNRETILNLQEILKPLEPV--QKAEAVENPFKGKTAVLTGTMSE-SRGAIKEMLEE 603

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            GA VS  +S+KTD +I G++ GSK +KA  LGV+ + E++ 
Sbjct: 604 FGAKVSGSVSKKTDFLIYGEDAGSKYDKAMSLGVECLTEDEM 645


>gi|196234150|ref|ZP_03132983.1| DNA ligase, NAD-dependent [Chthoniobacter flavus Ellin428]
 gi|196221801|gb|EDY16338.1| DNA ligase, NAD-dependent [Chthoniobacter flavus Ellin428]
          Length = 658

 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 209/658 (31%), Positives = 324/658 (49%), Gaps = 95/658 (14%)

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186
           + +EPK+DG  +++ YE G F   A RGDG  G++++  ++ + +IP R+     PE++E
Sbjct: 9   WLVEPKVDGLAVSLLYENGVFTRGATRGDGERGDEITDNLKTLRSIPLRLHGKGAPEVLE 68

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEVY+    F  + +EMIA G +P+AN RN A+G L++L+P  +  R L   ++GLG+
Sbjct: 69  VRGEVYLPVAGFQRIREEMIAAGEEPFANARNTAAGTLKQLDPALVAKRPLEIVLYGLGE 128

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S      Q  +L+ M+  G       R  +T   ++   +E+ SIR    ++ DG V K
Sbjct: 129 ISVDPPPTQAALLEWMKAFGLRTPKFTRVCHTAEEVMKAIDELDSIRDGFGFETDGAVIK 188

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           ++    ++++G  +R+P+W  + K+  +QA T L  I IQ+GRTG+LTPVA L PV + G
Sbjct: 189 LNSIEQRERVGYHSRAPKWAKAWKYVSEQAETVLESITIQVGRTGVLTPVAELRPVFLRG 248

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + I+ ATLHNED IK            +DIR+GD VL+++AGEVIP VV +++ +R   A
Sbjct: 249 STISRATLHNEDEIKR-----------KDIRIGDTVLIEKAGEVIPAVVKVVLEKRPSSA 297

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           QPF FP  CP+C S+  RD N       A   C   + C AQ   RL++F  R A +I+G
Sbjct: 298 QPFPFPHECPVCHSQAKRDPN------FAVWVCEN-VNCPAQLTRRLEYFAKRGALDIDG 350

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ----------------QTSTTKIE---- 525
           LG    D   +       +R P D+F L+  Q                + + TK+     
Sbjct: 351 LGGIVADKLVERS----LVRDPLDLFELKLEQLATLNLGTDDEPRVFGEKNATKVTEAIK 406

Query: 526 -----------NILGFGDVSVTNLYD------SINKRRNISLERFIFSLGIRHVGAEIA- 567
                      + L   +V     +D      S+   R+ ++ R + +L   H  AE + 
Sbjct: 407 RAKTQPLARWLHALAIPEVGEETAHDLAKHHPSLEAVRDSAMLRDVVALDRLHGEAEESN 466

Query: 568 ----RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI---------------- 607
               R+  K  L  Q  A     +IA  N     L+                        
Sbjct: 467 PRGKRNKDKTELEKQKLASRHAEVIAEANAAGRRLLEAGFAAPAKKKSATDADVVTVVGP 526

Query: 608 -IAQAIVEFY------QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
            +AQA + ++      +  + +  +    K  +P  G            K  V TGTL+K
Sbjct: 527 VVAQAALHWFAGESGHETLKRLHHLHIAPKGATPGAG------DQAFAGKTFVLTGTLEK 580

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R+ A E +  LG  VS+ +SRKT  ++ G   GSKLE AQ LGV +++E+QFL +L
Sbjct: 581 MGRNAAAEKIRALGGNVSSSVSRKTSYVVAGPGAGSKLEDAQSLGVTVLSEDQFLKML 638


>gi|308071012|ref|YP_003872617.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus
           polymyxa E681]
 gi|305860291|gb|ADM72079.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus
           polymyxa E681]
          Length = 680

 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 221/721 (30%), Positives = 358/721 (49%), Gaps = 78/721 (10%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L  E++ ++  YY   +P I D EYD L     A+      +     P+ P  ++GG
Sbjct: 16  MEQLVAELNTYNYHYYTLDEPKISDKEYDVLYDELVALEQTSGLVL----PDSPTQRVGG 71

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDN----SIFFTLEPK 133
           E+        H  P  SL+K  N+E LR +  R+ +    +  K+      S  + +E K
Sbjct: 72  ELLKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEQPLPSPGYAIELK 131

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGE 190
            DG  + + Y  G+ V A+ RG+G  GE + A ++ I ++P    L IP     IEV+GE
Sbjct: 132 FDGLTLNLTYTDGQLVQASTRGNGVVGEGILAQVKTIKSVP----LTIPFRNGTIEVQGE 187

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
             ++ +     N   +     P  N RNAA+G LR LNP     R LN F + +G    I
Sbjct: 188 GIMNLSVLSKYNKTAV----DPLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADRI 243

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 EM+  +R   F VN  +   + F  ++    E++  R+ L Y IDG V K+ + 
Sbjct: 244 QFNSHQEMMTFLRENHFKVNPYLTYFDNFEDVMEQLIEIEESRAGLDYLIDGAVLKITDM 303

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             ++ LG   + PRW +++KF  ++ +T L  ++  +GRTG +TP+AR+EPV + G  + 
Sbjct: 304 RTREALGYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQ 363

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           N TL+N         +G + R      +G RV ++R+ +VIP+++  + +E   D +   
Sbjct: 364 NCTLNN---------AGDIERKNLKFALGARVFIRRSNDVIPEILGKVTSEN--DGEEIV 412

Query: 430 FPSFCPIC----QSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIE 484
            P  CP C    Q R              AH  C   L C  Q + R+ HF SRDA +IE
Sbjct: 413 VPDHCPACGFPLQQR-------------GAHLFCDNKLGCKPQIVARISHFASRDAMDIE 459

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
               +      +  D    +R PAD++TL   Q     K+E    FG+   +NL  ++ K
Sbjct: 460 TFSDKTA---IQLHD-ELEVREPADLYTL---QYDDLVKLER---FGEKKASNLLAALEK 509

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++  L  F+++LGI + G    R LA++Y       ++++  ++   ++   LI +P V
Sbjct: 510 SKDRDLASFLYALGIPNTGKATTRMLAEHY-------RDLHKTMSATVEE---LIELPDV 559

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           G I+A++IV F+ +P     +E +L    K  +P     EK   S    K +V TGTL +
Sbjct: 560 GGIVAESIVAFFADPFTQAGIEKMLSLGVKAQAPE-APQEKKTDSFFSGKTVVLTGTLHQ 618

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV-KIMNEEQFLFLLQ 719
           + R +A   +  +GA V+  +S+KTD++I G+  GSKL KAQQLG+  I +E++F+ LL+
Sbjct: 619 LTRDEAVSKLEAMGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIEDEDEFIRLLE 678

Query: 720 Q 720
           Q
Sbjct: 679 Q 679


>gi|187776813|ref|ZP_02993286.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC
           15579]
 gi|187775472|gb|EDU39274.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC
           15579]
          Length = 664

 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 213/707 (30%), Positives = 361/707 (51%), Gaps = 64/707 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +E++ H   YY      I D EYD    + D +        +   P  P  ++
Sbjct: 6   EKMKELVEELNQHAYEYYVLDNSSISDKEYDL---KYDELV-VLEKETKVTLPYSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR----IYRFWQKKDDN--SIFFTLEP 132
           G  +     K TH     SL+K  N+  L ++  R    + ++    +D    + + +  
Sbjct: 62  GDNILGEFGKYTHKGRLWSLDKAQNMSQLTEWHNRNLKTVEQYNSINEDKLPELRYIVTK 121

Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           K DG  +   Y E G  V  A RG G  GED++A I+ I T+P  L +    +IEV GE 
Sbjct: 122 KFDGLTVNCTYDENGILVKGASRGTGIIGEDITAQIKTIKTVP--LKIKNNHVIEVHGEA 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            ++K  F    +E     + P  N RN A+G LR L+  + + R L+ F + +G      
Sbjct: 180 ILTKTAF----EEYNKTAQVPLKNLRNGAAGALRNLDIKETSKRNLSAFFYDVGYNEGPE 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   EM++ ++ +G P +  +++      +      ++SIR  L YDIDG V  VD+  
Sbjct: 236 FKSYTEMMKFIKNMGLPQDKYIKECTNMEEVEKEIQYIESIREELDYDIDGAVIVVDDIK 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            +K LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG  +  
Sbjct: 296 TRKVLGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N D I+            +++++G +VLV+R+ +VIP+++  +V E   +++    
Sbjct: 356 ATLNNMDDIQ-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESKEIEA 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G  ++ 
Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +  F+  D    I+  AD++ +++ +  +  K      FGD    NL D+I   +N  L
Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLDK------FGDKKSQNLIDAIENSKNCDL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             FI++LGI +VG + A  L   + + +N                  L+ VP VG+I+A+
Sbjct: 506 PSFIYALGIPNVGKKTANDLVMKFKTLENIESATIE----------ELVEVPDVGEIVAK 555

Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQ 667
           ++ +F+++ + I  +E LL   V P    +E+ +  E     K +V TG+L    R + +
Sbjct: 556 SVYDFFKDEKIINNIEELLNLGVKP---YYEEEIIDENPFMGKTIVVTGSLNNYSRGEIK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           + +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F
Sbjct: 613 DKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAVELGVKVINEEEF 659


>gi|68536402|ref|YP_251107.1| NAD-dependent DNA ligase LigA [Corynebacterium jeikeium K411]
 gi|123748223|sp|Q4JUL8|DNLJ_CORJK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|68264001|emb|CAI37489.1| DNA ligase [Corynebacterium jeikeium K411]
          Length = 695

 Score =  316 bits (810), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 214/714 (29%), Positives = 348/714 (48%), Gaps = 65/714 (9%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++ +H   YY Y +P I D+++DAL +    +  A P++     P   +        
Sbjct: 10  LADQVRHHRQLYY-YGEPEISDADFDALLQELKDLEQAHPEVVTGASPTEEVAP--APPT 66

Query: 84  LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
            S F+ V H    LSL+ +++ E L  ++ R           +  +  E KIDG  I + 
Sbjct: 67  SSPFRNVDHREQMLSLDNVFDTEQLAGWLDRT---------PAKTYLTELKIDGASINLL 117

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDF 198
           Y  G+   A  RGDG +GED++   R +  IP  L       +PE++E+RGEV+I   DF
Sbjct: 118 YIDGQLELALTRGDGTTGEDITHNARTLDDIPDTLHGTDEFPVPELVEIRGEVFIDVEDF 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
            A+N +  A G K +ANPRNAA+G +R+ N  D   R L    HG+G         Q++ 
Sbjct: 178 AAMNAQRQAEGLKMFANPRNAAAGAMRQKNSADTAKRPLKLICHGIGAREGFSPASQHDA 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            + +   G PV+   +Q ++   +        + R    +++DGLV KVD    Q +LG 
Sbjct: 238 YRAIAAWGLPVSPYTKQVHSAKEVQQQVEYWGNHRHDAAHEMDGLVVKVDSLEEQLELGH 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN-- 375
            +R+PRW I++K+  ++A T L +I + IGRTG  TP A + P  + G+ ++ ATLHN  
Sbjct: 298 TSRAPRWAIAYKYPPEEAMTTLHNIRVGIGRTGRATPYAVMAPKYVAGSTVSMATLHNPT 357

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           E + KG             + +GD + +++AGEVIP+V+  + ++R    +PF F +FCP
Sbjct: 358 EAHRKG-------------VLLGDTITIRKAGEVIPEVLGPVEDKRTGAERPFLFSTFCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C +R+      K G   A  RC     C  Q   RL +  SR AF+I+ LG++      
Sbjct: 405 ECGTRLAPS---KVGD--ADWRCPNTQYCPGQLHTRLTYLASRKAFDIDALGEKGAYDLI 459

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            S      +   +++F L+      T+      G  + S   L + +   +   L R + 
Sbjct: 460 HS----GVLADESELFDLRAEDLEKTSSYATKAGKLNKSGETLLEKLQSAKEADLWRVLV 515

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNF----AQEINNI------IAHNNDDWLSLIRVPLVG 605
           +L IRHVG   A++LAK++ S ++     A+E+  I      IA +  DW ++     + 
Sbjct: 516 ALSIRHVGPTAAKALAKHFESVEDIASASAEEMAGIDGVAETIAESISDWFTVDWHRRIV 575

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           D  A A V   +   N+              G  +   S+ +E   +V TG+L+   R  
Sbjct: 576 DRWAAAGVRMRREAGNVP-------------GAADGVDSALLEGLTIVVTGSLEDFDRTA 622

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +   G   +  +S+KTD ++ G+  GSKL+KA+ LGV +++E  F  LL+
Sbjct: 623 AKEAIEARGGKAAGSVSKKTDFLVAGEKAGSKLKKAEDLGVPVLDEAAFKELLE 676


>gi|261414540|ref|YP_003248223.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261370996|gb|ACX73741.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326001|gb|ADL25202.1| DNA ligase (NAD+) [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 715

 Score =  316 bits (810), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 216/715 (30%), Positives = 363/715 (50%), Gaps = 81/715 (11%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN-KIGGEM 82
           L++++      YY+     + D ++D   +  +A+   +P+L       G L  K+G ++
Sbjct: 15  LKKQLEEASRLYYKDGVSPMSDQDFDFGLKEMEALEAKYPELR----GKGSLTQKVGSDL 70

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFI--------TRIYRFWQKKDDNSIFFTLEPKI 134
                KV H++P LS+  +++ E++R+F+        + + R   KK      +  E KI
Sbjct: 71  TNDFAKVAHAVPMLSIANVYSEEEMREFVKAAEEGLSSFVSRLSSKK------WICERKI 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEI----I 185
           DG  +++ YE G+   AA RGDG  G+DV+     I  IP     + L ++  EI     
Sbjct: 125 DGVSLSVIYENGRLKQAATRGDGAQGDDVTLNALTIADIPEYFDAKKLKIDPSEIPQGTF 184

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG 244
           EVRGEVY+ +  F  LN++ I   +K + N RN  SG L+  +  +  TR + FF + + 
Sbjct: 185 EVRGEVYMEREAFERLNEQFILENKKTFQNCRNTVSGSLKLKSVAECKTRPMRFFAYHIP 244

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +++    K   E L++++ LGF  N+    A+T   I++   ++ + R +LP+DIDG+V 
Sbjct: 245 QSNN---KTHEENLKQLKRLGFHTND-YWTADTVDEIMAISEKIGASRDSLPFDIDGMVV 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+++   Q++LG  ++SPRW I++KF  ++A T LL ++ Q+GRTG +TPVA L PV + 
Sbjct: 301 KLNDLQQQRELGSTSKSPRWAIAYKFKAERAYTPLLSVEFQVGRTGAVTPVANLAPVRLA 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  ATLHN D +  L           D+  GD V V++ GE+IPK+ D+    R   
Sbjct: 361 GTTVKRATLHNFDEVARL-----------DLHYGDTVGVEKGGEIIPKITDVKRELRPAG 409

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A P   P  CP+C  +    L    G+++   RC   L C AQ     +HFVSR+A NIE
Sbjct: 410 ASPVVAPEKCPVCGEQ----LTHIDGEVIL--RCE-NLHCKAQVQCLFEHFVSREAMNIE 462

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
            LG   +     +       RIP D++ L      S  ++         S  N++D+I  
Sbjct: 463 NLGPALIASLLATGKIK---RIP-DLYRLTLEDLESQERM------AKKSAKNVFDAIQA 512

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIR 600
            +  SLE  +  LGIR VG   AR++AK++ + +       +E+ N+             
Sbjct: 513 SKQRSLENLLHGLGIRFVGRTSARNIAKHFRTLEKIRTATVEELQNVTD----------- 561

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
              VG+ I +++ EF+  P     ++ L+    P+    +  V +  + +  V TGTL  
Sbjct: 562 ---VGERIGKSVYEFFHTPLYTNEIDELVALGLPT--EFKGVVKTLFQGQTAVITGTLPN 616

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R +A++ + + G  VS  +S+KT  ++ G+  GSKL KA +LG+ + +E   +
Sbjct: 617 MDRDEARKLIEENGGKVSGSVSKKTSWVLAGEAAGSKLTKANELGIPVHDEAWLM 671


>gi|310644240|ref|YP_003948999.1| DNA ligase, nad-dependent [Paenibacillus polymyxa SC2]
 gi|309249191|gb|ADO58758.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2]
          Length = 671

 Score =  316 bits (810), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 222/721 (30%), Positives = 358/721 (49%), Gaps = 78/721 (10%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L  E++ ++  YY    P I D EYD L     A+      +     P+ P  ++GG
Sbjct: 7   MEQLVAELNTYNYHYYTLDDPQISDKEYDVLYDELVALEQTSGLVL----PDSPTQRVGG 62

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDN----SIFFTLEPK 133
           E+        H  P  SL+K  N+E LR +  R+ +    +  K+      S  + +E K
Sbjct: 63  EILKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEQPLPSPGYAIELK 122

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGE 190
            DG  + + Y  G+ V A+ RG+G  GE + A ++ I ++P    L IP     IEV+GE
Sbjct: 123 FDGLTLNLTYTDGQLVQASTRGNGVVGEGILAQVKTIKSVP----LKIPFQNGTIEVQGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
             ++ +     N++ +    +P  N RNAA+G LR LNP     R LN F + +G    I
Sbjct: 179 GIMNLSVLSNYNEKAV----EPLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADRI 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 EM+  +R   F VN  +   + F  ++    E++  R+ L Y IDG V K+ + 
Sbjct: 235 QFNSHQEMMTFLRENHFKVNPYLTYFDNFDDVMEQLIEIEESRAGLDYLIDGAVLKITDM 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             ++ LG   + PRW +++KF  ++ +T L  ++  +GRTG +TP+AR+EPV + G  + 
Sbjct: 295 RTREVLGYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQ 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           N TL+N         +G + R      +G RV ++R+ +VIP+++  + +E   D +   
Sbjct: 355 NCTLNN---------AGDIERKNLKFALGARVFIRRSNDVIPEILGKVTSEN--DGEEIV 403

Query: 430 FPSFCPIC----QSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIE 484
            P  CP C    Q R              AH  C   L C  Q + R+ HF SRDA +IE
Sbjct: 404 VPEHCPACGFPLQQR-------------GAHLFCDNKLGCKPQIVARISHFASRDAMDIE 450

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
               +      +  D    +R PAD++TL   Q     K+E    FG+    NL  ++ K
Sbjct: 451 TFSDKTA---IQLHD-ELGVREPADLYTL---QYDDLVKLER---FGEKKANNLLAALEK 500

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +   L  F+++LGI + G    R LA++Y       ++++  ++   D+   LI +P V
Sbjct: 501 SKERDLASFLYALGIPNTGKATTRMLAEHY-------RDLHKTMSATVDE---LIELPDV 550

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           G I+A++IV F+ +P     +E +L    K  +P      K + S    K +V TGTL +
Sbjct: 551 GGIVAESIVAFFADPFTQAGIEKMLSLGVKAQAPE-APQVKKIDSFFSGKTVVLTGTLHQ 609

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV-KIMNEEQFLFLLQ 719
           + R +A   +  LGA V+  +S+KTD++I G+  GSKL KAQQLG+  I +E++F+ LL+
Sbjct: 610 LTRDEAASRLEALGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIEDEDEFIRLLE 669

Query: 720 Q 720
           Q
Sbjct: 670 Q 670


>gi|153940260|ref|YP_001392616.1| NAD-dependent DNA ligase LigA [Clostridium botulinum F str.
           Langeland]
 gi|166215578|sp|A7GIK6|DNLJ_CLOBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152936156|gb|ABS41654.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. Langeland]
 gi|295320603|gb|ADG00981.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. 230613]
          Length = 664

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 214/704 (30%), Positives = 361/704 (51%), Gaps = 58/704 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +E++ +   YY    P I D EYD LK     I     ++     P  P  ++
Sbjct: 6   EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132
           G ++     K TH     SL+K  N+E L ++  R  +  ++ +  S      + + +  
Sbjct: 62  GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121

Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  L +    +IEV GE 
Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNSYVIEVHGEA 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
            ++K  F    +E     + P  N RN A+G LR L+  +  R  L+ F + +G      
Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   EM+  +R +G P +  +++      +      ++SIR  L YDIDG V  VD+  
Sbjct: 236 FKSYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIK 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG  +  
Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N D IK            +++++G +VLV+R+ +VIP+++  +V E   +++    
Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESEEIQA 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G  ++ 
Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +  F+  D    I+  AD++ +++ +  +  K      F D    NL D+I   +N  L
Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNSKNCDL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             FI++LGI +VG + A  L    + ++      N  I         L+ VP VG+I+A+
Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F+++ + I  +E LL          E+   +   +K +V TG+L    R + ++ +
Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGEIKDKL 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F
Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659


>gi|168179082|ref|ZP_02613746.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916]
 gi|182670115|gb|EDT82091.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916]
          Length = 664

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 214/704 (30%), Positives = 360/704 (51%), Gaps = 58/704 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +E++ +   YY    P I D EYD LK     I     ++     P  P  ++
Sbjct: 6   EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132
           G ++     K TH     SL+K  N+E L ++  R  +  ++ +  S      + + +  
Sbjct: 62  GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121

Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  L +    +IEV GE 
Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNNHVIEVHGEA 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
            ++K  F    +E     + P  N RN A+G LR L+  +  R  L+ F + +G      
Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  VD+  
Sbjct: 236 FKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIK 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG  +  
Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N D IK            +++++G +VLV+R+ +VIP+++  +V E   +++    
Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESEEIQA 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G  K+ 
Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSKKT 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +  F+  D    I+  AD++ +++ +  +  K      F D    NL D+I   +N  L
Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNSKNCDL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             FI++LGI +VG + A  L    + ++      N  I         L+ VP VG+I+A+
Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F+++ + I  +E LL          E+   +    K +V TG+L    R + ++ +
Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGEIKDKL 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F
Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659


>gi|170756080|ref|YP_001782894.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B1 str. Okra]
 gi|254781294|sp|B1ING1|DNLJ_CLOBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169121292|gb|ACA45128.1| DNA ligase, NAD-dependent [Clostridium botulinum B1 str. Okra]
          Length = 664

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 213/704 (30%), Positives = 361/704 (51%), Gaps = 58/704 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +E++ +   YY    P I D EYD LK     I     ++     P  P  ++
Sbjct: 6   EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132
           G ++     K TH     SL+K  N+E L ++  R  +  ++ +  S      + + +  
Sbjct: 62  GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121

Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  L +    +IEV GE 
Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNSHVIEVHGEA 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
            ++K  F    +E     + P  N RN A+G LR L+  +  R  L+ F + +G      
Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  VD+  
Sbjct: 236 FKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIK 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG  +  
Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N D IK            +++++G +VLV+R+ +VIP+++  +V E   +++    
Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESEEIQA 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G  ++ 
Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +  F+  D    I+  AD++ +++ +  +  K      F D    NL D+I   +N  L
Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNSKNCDL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             FI++LGI +VG + A  L    + ++      N  I         L+ VP VG+I+A+
Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F+++ + I  +E LL          E+   +   +K +V TG+L    R + ++ +
Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGEIKDKL 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F
Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659


>gi|284037426|ref|YP_003387356.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74]
 gi|283816719|gb|ADB38557.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74]
          Length = 696

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 220/731 (30%), Positives = 363/731 (49%), Gaps = 72/731 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L   ++ ++  YYQ S   + D  +D L     A+ + +P+  +   P+ P  ++
Sbjct: 5   EQIIDLTNRLNQYNFQYYQNSISEVDDFTFDKLLADLTALENQYPEFRQ---PDSPTARV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGT 137
           GG ++     V H  P LSL   ++ EDL +F  R+    QK  +   + +  E K DG 
Sbjct: 62  GGTISKEFKTVYHRFPMLSLGNTYSEEDLIEFDKRV----QKGLNGQTYEYICELKFDGV 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL------NIPE-------- 183
            +++ YE G  V  A RGDG  G+D++  IR I T+P  +          PE        
Sbjct: 118 ALSLTYENGVLVQGATRGDGVRGDDITNNIRTIRTVPLRIGAGHKATHTQPESAPAVAAL 177

Query: 184 --IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240
             + EVRGE ++   +F  +N E   +G    ANPRNAASG  ++ +   +  R L+ ++
Sbjct: 178 PALFEVRGEGFLPLAEFDRINKEREDIGEPLLANPRNAASGTFKQQDSGAVAKRRLDCYL 237

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           +     ++IF   + E L  M   GF V+   R+      +++Y NE ++ R  LP   D
Sbjct: 238 YSFLSDTDIFQTHE-ESLVAMNAWGFNVSPTWRKCTDIQEVMAYINEWETKRFDLPLGTD 296

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KV+ +  Q+ LG  A+SPRW I+ K+    AST L  I  Q+GRTG +TPVA L P
Sbjct: 297 GIVIKVNRYDQQRDLGYTAKSPRWAIAFKYKAMAASTELNGIQYQVGRTGAVTPVALLTP 356

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G ++  A+LHN + I+ L   G +M         D V V++ GE+IPK+  + +N 
Sbjct: 357 VLLAGTIVKRASLHNANEIERL---GVMMH--------DTVFVEKGGEIIPKITGVDLNR 405

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R   +QP  +P+ CP C + +VR    K G+  A   C     C  Q+  R +HF+ R A
Sbjct: 406 RTDKSQPIVYPTTCPACGTALVR----KEGE--AHFYCPNEQGCPPQRQARFEHFIQRRA 459

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI--------ENILGFGD 532
            NIE LG+ +++      D    ++ PAD++ L+        K+        + ++ F +
Sbjct: 460 MNIESLGEGKIELLI---DRGL-VQTPADLYDLKATDLLGIEKVFLVEETGKKRVVSFRE 515

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +V N+  +I + ++      +F LGIR+VG   A  L  Y+ S            A  N
Sbjct: 516 KTVENILTAIERSKSQPFANVLFGLGIRYVGNTTAEKLVDYFGSMD----------AIMN 565

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IE 648
                L+ VP  G  IA+++V ++ +  N   VE L       +G  EK V  +    + 
Sbjct: 566 ATQEQLLAVPDTGPRIAESVVAWFGDTANQEFVERLRAAGLQFVG--EKKVVEQEGDSLT 623

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
            K  ++TGT     R + +  +   G  + + +S+K + +IVG+N G SK+EKA++L V 
Sbjct: 624 GKTFLYTGTFANFSREELESRIEANGGKLLSGISKKLNYLIVGENAGPSKVEKAKKLNVP 683

Query: 708 IMNEEQFLFLL 718
           ++ E++F+ +L
Sbjct: 684 MIGEDEFMAML 694


>gi|116514984|ref|YP_802613.1| DNA ligase [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285620|sp|Q058C9|DNLJ_BUCCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116256838|gb|ABJ90520.1| DNA ligase [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 587

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 197/616 (31%), Positives = 324/616 (52%), Gaps = 46/616 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L+ +I YH+  Y+    PII D  YD L  +   +   +      +     L+++G
Sbjct: 7   QILKLQLQIKYHNYMYHTLDSPIISDILYDELYNKLLQLEKLYFKKKSLDKKIKLLDQVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +  H IP LSL  I NI D   F  +I  ++  K  N I +  + K DG  +
Sbjct: 67  AKKLHIFTEFFHKIPMLSLRSINNISDFDLFDKKIKEYF--KHINVITYFCDFKFDGLAV 124

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR-VLSLNIPEIIEVRGEVYISKNDF 198
            + Y+ G  + A+ RG+G  GE+++  I  I +IP+ +   NIP+ IE+RGE+++ K+DF
Sbjct: 125 NLFYKNGILISASTRGNGSVGENITKNILMISSIPKKIAGSNIPKKIEIRGEIFMRKSDF 184

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG---KTSEIFAKGQ 254
             LN      G+K ++NPRNAA+G +R+LNP  +  R LNFFV+G G      +I     
Sbjct: 185 FILNQSCKLSGKKEFSNPRNAAAGSVRQLNPEIVKKRKLNFFVYGFGLFDYNKKI--DSH 242

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y+ L +++  GFP+            ++ +Y+    IRS L ++IDG+V K+D   LQ  
Sbjct: 243 YQRLLQIKKWGFPLYKNYCVCKNKKEVIHFYHYANKIRSQLDFEIDGIVIKLDSIKLQNN 302

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   + P+W I+ KF      T++  I  ++GRTGI+TPVA   P+N+ G  I+ A+L+
Sbjct: 303 LGCIEKYPKWAIALKFFSLDKETKIFKISFKVGRTGIITPVAYFFPINLFGVSISKASLY 362

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   IK L           DIR+ D V V RAG+VIPK+ ++++++R+   Q    P++C
Sbjct: 363 NIKTIKLL-----------DIRLHDYVTVYRAGDVIPKIRNVLIHKRNKYTQKIIIPTYC 411

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C ++++   + KT        C    +C +Q ++RL +F S++  N +GLGK+ +   
Sbjct: 412 PSCCTKLIFSDDLKTC------YCPASFSCFSQNVKRLIYFSSKNGLNFKGLGKKNI--- 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            K  +  + +  P D F+L      +  K++NI   GD     +  +I   + +SL++FI
Sbjct: 463 IKLINYGY-LYTPIDFFSL------TVKKLKNIFRMGDKLSEKIIKNIAFSKRVSLDKFI 515

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            SLGI  VG  IA+ LA YY S + F           N ++ +L ++  +G  I+ AI+ 
Sbjct: 516 CSLGIFGVGTSIAKRLAYYYRSVEKFF----------NTNYDTLSKIDHIGYNISNAIIS 565

Query: 615 FYQNPRNICAVEALLK 630
           F +N  N   +  L++
Sbjct: 566 FLKNKSNRSIILKLIR 581


>gi|118474676|ref|YP_892270.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp. fetus
           82-40]
 gi|166215570|sp|A0RPY7|DNLJ_CAMFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118413902|gb|ABK82322.1| DNA ligase, NAD-dependent [Campylobacter fetus subsp. fetus 82-40]
          Length = 645

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 220/687 (32%), Positives = 351/687 (51%), Gaps = 70/687 (10%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P+  D EYD L           PDL  S  P    N+IGGE+     K++H  
Sbjct: 19  AYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSYSPT---NRIGGEILDEFKKISH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               +EK+W++ED+    + +  +  + D     F  EPK DG  + + YE G  + AA 
Sbjct: 74  ----IEKMWSMEDIFS-DSELVAWISRGDKTDCEFFAEPKFDGASLNLLYENGNLISAAT 128

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GEDV+   + I ++P  L ++  + IE+RGEV I+K+DF  +N E       P 
Sbjct: 129 RGDGSVGEDVTNNAKVISSVP--LQIDYKDKIEIRGEVVITKDDFELINIERSKNSEPPL 186

Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+   +  R L F+  G+G+ S  F K   +++  +R LGF  +N  
Sbjct: 187 ANPRNAAAGSLRQLDNGIVKQRKLKFYPWGVGENSLKFNK-HSQIMDFVRSLGFLHDNFC 245

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           +       +   Y E+ S+R   P  +DG+V +V++ S   QLG   + P++M+++KF  
Sbjct: 246 KVIRGIDELKIAYKELLSVRELKPILMDGMVIRVNDLSKANQLGYTVKFPKFMVAYKFPA 305

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            + + RL+DI +Q+GRTG++TPV  L+ V I GA I N TLHN D I  L+    +M+  
Sbjct: 306 TEKTARLIDILLQVGRTGVVTPVGLLDGVLIDGAFIKNVTLHNFDEIDRLN----LMK-- 359

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
                 D V V R+G+VIPK+  +  + R         P  CP C + ++ +     G  
Sbjct: 360 -----NDFVTVIRSGDVIPKITGVFKDRRDGSQSEIIRPKICPKCGNELLDE-----GVF 409

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           +   +C   L C A+ +  + +F S+   NI+GLG   ++  ++         I  DI  
Sbjct: 410 I---KCQ-NLTCKARVVSSIIYFASKKCMNIDGLGDAIVELLYQK-------NIIKDIAD 458

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           + R  + S   +E   GF    ++NL  +IN  +  +L++FI SLGI H+G   A+ +A 
Sbjct: 459 IYRLDELSFIGLE---GFKTKKISNLLSAINNSKTPNLDKFIASLGIEHIGEVAAKKIAN 515

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-----VGDIIAQAIVEFYQNPRNICAVEA 627
            Y                  D WL L    L      G+ +A + +EF +   N+  ++ 
Sbjct: 516 NY-----------------GDRWLELTLEELLALDGFGEAMALSYLEFMR--VNLEKIKE 556

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           LL+ ++P +   E   ++    K +V TGTL +  R + +  +   GA VS+ +S+KTD 
Sbjct: 557 LLEFITPKMQNLELK-TNIFSGKTVVITGTLSR-SRDEFKAELESYGAKVSSSVSKKTDF 614

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           ++ G+  GSKLEKA +LGV+ ++E ++
Sbjct: 615 VLYGNEAGSKLEKANELGVRAIDESEY 641


>gi|322807581|emb|CBZ05156.1| DNA ligase [Clostridium botulinum H04402 065]
          Length = 664

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 213/704 (30%), Positives = 361/704 (51%), Gaps = 58/704 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +E++ +   YY    P I D EYD LK     I     ++     P  P  ++
Sbjct: 6   EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132
           G ++     K TH     SL+K  N+E L ++  R  +  ++ +  S      + + +  
Sbjct: 62  GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121

Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  L +    +IEV GE 
Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNDHVIEVHGEA 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
            ++K  F    +E     + P  N RN A+G LR L+  +  R  L+ F + +G      
Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  VD+  
Sbjct: 236 FKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIK 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG  +  
Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N D IK            +++++G +VLV+R+ +VIP+++  +V E   +++    
Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESEEIQA 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G  ++ 
Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +  F+  D    I+  AD++ +++ +  +  K      F D    NL D+I   +N  L
Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNSKNCDL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             FI++LGI +VG + A  L    + ++      N  I         L+ VP VG+I+A+
Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F+++ + I  +E LL          E+   +   +K +V TG+L    R + ++ +
Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMSKTIVVTGSLNNYSRGEIKDKL 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F
Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659


>gi|304440548|ref|ZP_07400435.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371026|gb|EFM24645.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 650

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 214/705 (30%), Positives = 355/705 (50%), Gaps = 75/705 (10%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PNG 73
           EL  L  + SYH   YY   +P++ D EYD L          + +L + E       P+ 
Sbjct: 7   ELVELLNKYSYH---YYTLDEPLVADVEYDRL----------YDELVKLEKETGYIRPDS 53

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P N++GGE+     K TH  P  S++K  + ++LR +  R  R      D  I + +E K
Sbjct: 54  PTNRVGGELLTGFVKHTHLSPLYSMDKAQSFDELRAWEERNMRLLPGVKD--IDYVVELK 111

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + Y  G    A+ RG+G  GE++   ++ I ++P  LS+    + EV+GE  +
Sbjct: 112 FDGLTINLTYNNGILENASTRGNGLIGEEILPQVKTINSVP--LSIEYKGLFEVQGEGLM 169

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGLGKTSEIFA 251
               F   N+       +   NPRNAA+G LR L+P  +TR  N   + + +G       
Sbjct: 170 PFKAFNKYNE----TAEEVLKNPRNAAAGALRNLDPK-VTRKRNLDAYFYNVGYIEGREF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K   EM + +R   F VN            +   N+++ +R +L   IDG   KVD++SL
Sbjct: 225 KTDTEMKEFLREQKFKVNPIYYHVKNIDEAIECINKIEEMRDSLDVLIDGATIKVDDYSL 284

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG   + PRW +++K+  K+ +T+LLD+   +GRT  +TP A LEPV IGG  I  A
Sbjct: 285 RERLGYTNKFPRWAVAYKYEAKEVTTKLLDVIWNVGRTAKVTPSAILEPVEIGGVTIQRA 344

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N D I+            + +R+G RVL++R+ +VIP+++  + ++     +    P
Sbjct: 345 TLNNFDDIQ-----------RKKLRLGSRVLLRRSNDVIPEILGAVPSDEK--TEEIKLP 391

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           + CP C S + +D           H  C   L+C  Q + R+ HF SRDA NIEGL  + 
Sbjct: 392 THCPYCGSELYKD---------GVHIFCPNTLSCLPQLIGRIVHFTSRDAMNIEGLSDKT 442

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                   D    I+  +D++ + +    S      + GF D    NL + + K ++++L
Sbjct: 443 AAVLISDLD----IKEVSDLYDITKENLMS------LEGFKDKKSDNLLEQLEKSKDVNL 492

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             F+++LGI +VG + AR LA ++ S +                   L+ +  VG I A 
Sbjct: 493 SNFVYALGIHNVGIKAARDLADHFKSLEGLMNATEE----------ELVSIDDVGPITAH 542

Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I EF+ + R   +++ L+   ++P      K+ +S     K+V TG L + ++   +E 
Sbjct: 543 EIYEFFHDERIKDSIKKLIDHGITPKYVDVAKDSNSNFAGLKIVLTGKLSRPRKEIEKEL 602

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           ++ LGA V   +S+ TD++I+G+N GSK +KA++LG+KI++E+ +
Sbjct: 603 LS-LGAEVVGSVSKNTDLVIIGENAGSKADKARELGIKIIDEKTY 646


>gi|237739847|ref|ZP_04570328.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31]
 gi|229423455|gb|EEO38502.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31]
          Length = 594

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 207/634 (32%), Positives = 342/634 (53%), Gaps = 48/634 (7%)

Query: 96  LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155
           LSL   +NI ++  FI RI +   K  +  + + LE K+DG  I++ Y +GK V A  RG
Sbjct: 2   LSLANSYNIGEVVDFIERIKKRISK--EQELKYCLEVKLDGLSISLTYIQGKLVRAVTRG 59

Query: 156 DGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYAN 215
           DG  GEDV+  I  I ++ + L   +   IE+RGE+ +    F  LN E +  G + +AN
Sbjct: 60  DGFIGEDVTENILQIASVVKTLPQALD--IEIRGEIVLPLASFEKLNKERLEKGEELFAN 117

Query: 216 PRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274
           PRNAASG LR+L+P  +  R L+ + + L +  ++  K   E ++ +  +G         
Sbjct: 118 PRNAASGTLRQLDPKIVKERALDAYFYFLVEADKLGLKSHSESMKFLESMGIKTTGIFEL 177

Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334
                 I    +  +  R  LPY+ DGLV KVDE +L  ++G  +++PRW I++KF   Q
Sbjct: 178 LENSKDIEQRIDYWEKERENLPYETDGLVIKVDEINLWDEIGYTSKTPRWAIAYKFPAHQ 237

Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394
            ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN   I+            +D
Sbjct: 238 VSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNISEIQ-----------RKD 286

Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
           IR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+C  ++ R+        + 
Sbjct: 287 IRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKTIEEPINCPVCNHKLEREEG------LV 340

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514
             +C     C A+    +++FVSRDA NI GLG + ++ F    D  + I+   DI+ L+
Sbjct: 341 DIKCVNE-ECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFI---DLGY-IKTVVDIYDLK 395

Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
             ++     +ENI   G  S+ NL +SI + +N   ++ I++LGI  +G   ++ LAK  
Sbjct: 396 NHRED----LENIDKMGKRSIENLLNSIEESKNREYDKVIYALGIPFIGKVASKVLAKA- 450

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK---- 630
                 ++ I+ +++   ++   L  +  +G+I A  I+ F++  +    V AL +    
Sbjct: 451 ------SKNIDKLMSMTFEE---LTSIEGIGEIAANEIIAFFKKEKTQKLVAALKEKGLK 501

Query: 631 -EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
            E++ S  + E N++     K  +FTGTL+   R + +E + +LG    + +S+  D +I
Sbjct: 502 FEITESETKVE-NLNPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKNLSSVSKNLDYLI 560

Query: 690 VGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           VG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 561 VGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 594


>gi|226950696|ref|YP_002805787.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto]
 gi|254781293|sp|C1FLS8|DNLJ_CLOBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226842063|gb|ACO84729.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto]
          Length = 664

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 213/704 (30%), Positives = 360/704 (51%), Gaps = 58/704 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +E++ +   YY    P I D EYD LK     I     ++     P  P  ++
Sbjct: 6   EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132
           G ++     K TH     SL+K  N+E L ++  R  +  ++ +  S      + + +  
Sbjct: 62  GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121

Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  L +    +IEV GE 
Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNNHVIEVHGEA 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
            ++K  F    +E     + P  N RN A+G LR L+  +  R  L+ F + +G      
Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  VD+  
Sbjct: 236 FKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIK 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG  +  
Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N D IK            +++++G +VLV+R+ +VIP+++  +V E   +++    
Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESEEIQA 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G  ++ 
Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +  F+  D    I+  AD++ +++ +  +  K      F D    NL D+I   +N  L
Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNSKNCDL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             FI++LGI +VG + A  L    + ++      N  I         L+ VP VG+I+A+
Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F+++ + I  +E LL          E+   +    K +V TG+L    R + ++ +
Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGEIKDKL 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F
Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659


>gi|319441119|ref|ZP_07990275.1| NAD-dependent DNA ligase LigA [Corynebacterium variabile DSM 44702]
          Length = 702

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 220/720 (30%), Positives = 358/720 (49%), Gaps = 65/720 (9%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           S+L  EI +H D YY Y +P+I D+E+D + R   ++    P++     P   + +    
Sbjct: 33  SALAAEIRHHRDLYY-YREPVITDAEFDTMMRELQSLEAEHPEVVTGPSPTTEVAQP--P 89

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
           +N     V H    LSL+ +++  +L++++ R           S  +  E KIDG  I +
Sbjct: 90  VNSPFRNVAHREQMLSLDNVFDGGELKEWLDRT---------PSETYLTELKIDGASIDL 140

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYISKND 197
            Y  G+   A  RGDG +GED++   R I  IP  LS      +P ++E+RGE++I+  D
Sbjct: 141 LYLDGRLETALTRGDGVTGEDITHNARTISDIPDRLSGTEEFPVPAVVEIRGEIFITVED 200

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N +  A G+K +ANPRNAA+G +R+ NP +   R L    HGLG         Q++
Sbjct: 201 FATMNADRQAEGKKMFANPRNAAAGAMRQKNPAETAKRPLKLICHGLGAREGFEPASQHD 260

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
             + +   G PV+   +Q ++   +++        R    +++DGLV KVD    Q+ LG
Sbjct: 261 AYRAIEAWGLPVSPYTKQVHSAEEVIAQVGYWGEHRHDATHEMDGLVVKVDSLDEQEDLG 320

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN- 375
             +R+PRW I++K+  ++A T +  I I +GRTG  TP A + P  + G+ ++ ATLHN 
Sbjct: 321 ATSRAPRWAIAYKYPPEEAMTTVESIRIGMGRTGRATPFAVMSPTPVAGSTVSMATLHNP 380

Query: 376 -EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
            E + KG             IR+GDRV++++AGEVIP+V+  + + R    + F F S C
Sbjct: 381 TEAHRKG-------------IRLGDRVMIRKAGEVIPEVLGPVEDVRDGSEREFVFSSVC 427

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +       T +  A  RC     C  Q   RL +   R AF+I+ LG++     
Sbjct: 428 PECGTPLA-----PTKEGDADWRCPNTRYCPGQLQNRLNYLAGRGAFDIDALGER----- 477

Query: 495 FKSEDPAFSIRIPAD--IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             + D   S  +P +  +F+L     TST       G  +     L D++ + + + L R
Sbjct: 478 -AASDLIASGVLPDEGRLFSLSADDLTSTNAYTTKAGKLNRPGELLLDNLEEAKQVDLWR 536

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I +L IRHVG   A++LA    S          I A +      +  +  VG IIAQ++
Sbjct: 537 VITALSIRHVGPTAAKALAATLQS----------IPAIDKASVEEMAEIDGVGGIIAQSV 586

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKL-----VFTGTLQKIQRHKA 666
            +++    +   V+A     + +  R E+ V +S++  + L     V TG+L+   R  A
Sbjct: 587 KDWFAVDWHREIVDAW----ADAGVRMEQIVEASDLPEQTLAGLTVVVTGSLENFDRTSA 642

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +E V   G   +  +S+ TD ++ G+  GSKL KA+ LGV +++E  F  LL +    +R
Sbjct: 643 KEAVESRGGKAAGSVSKNTDFLVAGEKAGSKLTKAEDLGVPVLDEAGFEKLLAEGPDAVR 702


>gi|301633469|gb|ADK87023.1| DNA ligase (NAD(+)) [Mycoplasma pneumoniae FH]
          Length = 658

 Score =  314 bits (804), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 207/702 (29%), Positives = 356/702 (50%), Gaps = 63/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ ++ +++  +D  YY    P++ D EYD L ++  A+  A P+L +   P+ P  ++G
Sbjct: 6   QIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQ---PDSPTQRVG 62

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G +  +  K  H  P LSL+  ++   +  FI  I      ++     F +EPKIDG  I
Sbjct: 63  GIVVEAFNKFPHQNPMLSLDNAFDTATIASFIANINNLTGVQNR----FVVEPKIDGVSI 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ YE G    A  RGDG  GEDV + ++ I +IP  L++   + +E+RGE+++ K  F 
Sbjct: 119 SLTYENGLLTRALTRGDGLVGEDVLSNVKTIKSIP--LTIPFHKQVEIRGEIFVDKKTFA 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258
            +N+ +     KP+AN RN A+G LR LN      R L  F + +     +  + Q  +L
Sbjct: 177 QINENL----AKPFANARNLAAGTLRNLNSEVSAKRKLKAFFYFVPNALTLGCRSQSAVL 232

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            +++   FPV+  V   +    ++ Y ++    R  L + +DGLV K+D F    QLG  
Sbjct: 233 AQLKQWNFPVSKAVASFDRPEALIEYLDQFDQTRDQLNFQVDGLVVKLDNFHFYDQLGFT 292

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           ++ PRW +++KF  K   T+L  + + +GRTG +   A+L+PVN+ G +++ ATLHN DY
Sbjct: 293 SKFPRWALAYKFKPKFVQTKLRGVLVTVGRTGKINYTAQLDPVNLEGTVVSAATLHNFDY 352

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           IK            +DIR+ D V++ +AGE+IPKV+++ +  R    QP    + CP CQ
Sbjct: 353 IK-----------EKDIRLNDTVIIYKAGEIIPKVLEVCLPLRTAANQPIPEQTHCPACQ 401

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + +V+       K      CT    C  + LE + +FVS+ A +I+GL  Q +   +++ 
Sbjct: 402 APLVQ------YKDEVDQYCTNE-RCDQRNLEAINYFVSKTAMDIQGLSIQTISKLYENN 454

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                +R   D++ L +  + +   +E  L  G+V    L  SI + +   + R +  LG
Sbjct: 455 ----LVRSVVDLYHL-KEHKAAVLALE--LKIGEVLFNKLISSIEQSKTKGMARLLTGLG 507

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I+HVG  +A+SL K++           NI A  +    +L+ +P VG  +A+++  ++ N
Sbjct: 508 IKHVGQVLAKSLTKHF----------ENIDALQSASMETLLELPDVGPTVAESLFNWFHN 557

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTL----QKIQRHKAQEYV 670
             N+  + A LK V   +   + N + +  +    K  V TG+       I+   A +Y 
Sbjct: 558 DNNLQLLAA-LKAVGVQMDALKSNTNFDTASIYFQKSFVITGSFPISRDTIKNLLANKYD 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNE 711
            +    V++    K D ++ G      KLE+A+ L + I+NE
Sbjct: 617 CRFTNNVTS----KVDFVLAGIKATPRKLEQAKALNIPIINE 654


>gi|302380539|ref|ZP_07269004.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3]
 gi|302311482|gb|EFK93498.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3]
          Length = 662

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 210/713 (29%), Positives = 371/713 (52%), Gaps = 82/713 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           K L  +  + +YH   YY    P+I DSEYD L          + +L   E       PN
Sbjct: 8   KYLVDILNKYAYH---YYTLDDPLIADSEYDVL----------YDELVNLEKETGIVLPN 54

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIYRFWQKKDDN------S 125
            P N+IGGE+ LS F+    + TL SL K  + E++R ++ +   F +  ++N       
Sbjct: 55  SPTNRIGGEV-LSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVENYNENHVNKLPK 113

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + F +E K DG  + + Y+ G  V A  RG+G  GE +++ ++ I +IP  L +    ++
Sbjct: 114 VEFYVEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIP--LKIKDKRLM 171

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGL 243
           E++GE  +  +     N            N RNAA+G LR L+P+ +TR  N   + + +
Sbjct: 172 EIQGEGVMPLSSLEKYN----KTHEPKLKNARNAAAGALRNLDPS-VTRERNLDAYFYNV 226

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               +   + Q EM++ +    F +    + A +F  I  + +E+  +R+ +    DG+V
Sbjct: 227 NYLQDNELETQEEMMKFLGDNYFKLYPYEKHATSFEEISKFIDEIFELRNEIDVLTDGVV 286

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++F  +++LG   + PRW I++KF  ++ +T + +++  +GRTG +TP A LEPV I
Sbjct: 287 IKVNDFKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEI 346

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           G   +  ATL+N D I+            + +R+   V V+R+ +VIP+++  +VN    
Sbjct: 347 GNVTVKRATLNNIDDIE-----------RKQVRLNSEVFVRRSNDVIPEIMG-VVNPDQE 394

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFN 482
           D +    P +CP C S + RD           H  C   ++C+ Q ++R+ HF SR+A N
Sbjct: 395 DTEEIEIPHYCPYCHSELFRD---------GVHIFCPNSMSCTPQLVKRMVHFASRNAMN 445

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GL ++ L+   +      +I+   +I+ +++ Q      +  + GF +    NL ++I
Sbjct: 446 IDGLSEKTLEVLLEK----LNIKSIEEIYDVKKEQ------LMQLDGFKEKKSQNLINAI 495

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +N+ L  FIF+LGI  +G + +  LA+ Y S+ N  +            +  LI++ 
Sbjct: 496 EKSKNVDLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIE 545

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKI 661
            +G++IA+ IVEF+ +     ++++LL   S  I  ++ +N+  +++N   V TG+L   
Sbjct: 546 DIGNVIAEEIVEFFHDETISNSIDSLL---SKGIKIKNPENIEKKLDNLTFVLTGSLVNY 602

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            R +  + ++ LGA VS+ +S+ TD ++ G+  GSKL KA+ LGVK+M E++ 
Sbjct: 603 SRKELTDKLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDEL 655


>gi|56807783|ref|ZP_00365637.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus pyogenes M49 591]
          Length = 571

 Score =  313 bits (803), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 194/590 (32%), Positives = 321/590 (54%), Gaps = 51/590 (8%)

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  E KIDG  I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I V
Sbjct: 23  YLAELKIDGLSISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITV 80

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGE Y+S+  F A+N+     G   +ANPRNAA+G LR+L+   +  R L  F++   + 
Sbjct: 81  RGEAYMSRQSFKAINEARQENGETEFANPRNAAAGTLRQLDTAVVAKRELATFLYQ--EA 138

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S      Q E+L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV
Sbjct: 139 SPTARNQQNEVLAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKV 198

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  ++Q++LG   ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G 
Sbjct: 199 NSLAMQEELGFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGT 258

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATLHN DYI             +DIR+GD V+V +AG++IP V+++++++R+   +
Sbjct: 259 TVSRATLHNVDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-E 306

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP C S +V   +        A RC   L C +     L+HF SRDA NI GL
Sbjct: 307 VMLIPKLCPSCGSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGL 359

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSIN 543
           G   ++  F     A  +   ADI+ L +         EN +   G  + S   L  +I 
Sbjct: 360 GPAIVEKLF----LAGFVHDVADIYQLTK---------ENFMQLDGIKEKSADKLLAAIE 406

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             ++ S E+ +F LGIRH+G++++R + + Y        +I+ ++    ++   + R+  
Sbjct: 407 ASKSNSAEKLLFGLGIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDG 456

Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           +G  IAQ++ ++++       V+ L    V+      + N  + +    +V TG L ++ 
Sbjct: 457 LGSTIAQSLTQYFEQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLN 516

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           R++A++ +  LGA V+  +S+KTD++I G + GSKLEKA+ LG++I +E+
Sbjct: 517 RNEAKDKLEALGAKVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 566


>gi|13508096|ref|NP_110045.1| DNA ligase [Mycoplasma pneumoniae M129]
 gi|2494169|sp|P78021|DNLJ_MYCPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|1674170|gb|AAB96127.1| DNA ligase [Mycoplasma pneumoniae M129]
          Length = 658

 Score =  313 bits (803), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 204/698 (29%), Positives = 352/698 (50%), Gaps = 55/698 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ ++ +++  +D  YY    P++ D EYD L ++  A+  A P+L +   P+ P  ++G
Sbjct: 6   QIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQ---PDSPTQRVG 62

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G +  +  K  H  P LSL+  ++   +  FI  I      ++     F +EPKIDG  I
Sbjct: 63  GIVVEAFNKFPHQNPMLSLDNAFDTATIASFIANINNLTGVQNR----FVVEPKIDGVSI 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ YE G    A  RGDG  GEDV + ++ I +IP  L++   + +E+RGE+++ K  F 
Sbjct: 119 SLTYENGLLTRALTRGDGLVGEDVLSNVKTIKSIP--LTIPFHKQVEIRGEIFVDKKTFA 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258
            +N+ +     KP+AN RN A+G LR LN      R L  F + +     +  + Q  +L
Sbjct: 177 QINENL----AKPFANARNLAAGTLRNLNSEVSAKRKLKAFFYFVPNALTLGCRSQSAVL 232

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            +++   FPV+  V   +    ++ Y  +    R  L + +DGLV K+D F    QLG  
Sbjct: 233 AQLKQWNFPVSKAVASFDRPEALIEYLEQFDQTRDQLNFQVDGLVVKLDNFHFYDQLGFT 292

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           ++ PRW +++KF  K   T+L  + + +GRTG +   A+L+PVN+ G +++ ATLHN DY
Sbjct: 293 SKFPRWALAYKFKPKFVQTKLRGVLVTVGRTGKINYTAQLDPVNLEGTVVSAATLHNFDY 352

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           IK            +DIR+ D V++ +AGE+IPKV+++ +  R    QP    + CP CQ
Sbjct: 353 IK-----------EKDIRLNDTVIIYKAGEIIPKVLEVCLPLRTAANQPIPEQTHCPACQ 401

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + +V+       K      CT    C  + LE + +FVS+ A +I+GL  Q +   +++ 
Sbjct: 402 APLVQ------YKDEVDQYCTNE-RCDQRNLEAINYFVSKTAMDIQGLSIQTISKLYENN 454

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                +R   D++ L +  + +   +E  L  G+V    L  SI + +   + R +  LG
Sbjct: 455 ----LVRSVVDLYHL-KEHKAAVLALE--LKIGEVLFNKLISSIEQSKTKGMARLLTGLG 507

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I+HVG  +A+SL K++           NI A  +    +L+ +P VG  +A+++  ++ N
Sbjct: 508 IKHVGQVLAKSLTKHF----------ENIDALQSASMETLLELPDVGPTVAESLFNWFHN 557

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQKIQRHKAQEYVTQLG 674
             N+  + A LK V   +   + N + +  +    K  V TG+    +       V +  
Sbjct: 558 DNNLQLLAA-LKAVGVQMDALKSNTNFDTASIYFQKSFVITGSFPISRDTIKNLLVNKYD 616

Query: 675 AVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNE 711
              +  ++ K D ++ G      KLE+A+ L + I+NE
Sbjct: 617 CRFTNNVTSKVDFVLAGIKATPRKLEQAKALNIPIINE 654


>gi|291320206|ref|YP_003515467.1| DNA ligase [Mycoplasma agalactiae]
 gi|290752538|emb|CBH40510.1| DNA ligase [Mycoplasma agalactiae]
          Length = 654

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 229/707 (32%), Positives = 369/707 (52%), Gaps = 57/707 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A++ + SL + I+  +  YYQ +KP + D EYD      + +    PDL  +   N P
Sbjct: 4   EKAKELIKSLVETINQWNYEYYQLNKPSVSDLEYDKALLELEKLEKEHPDLILN---NSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +IG   +    K  H  P LSL K +N +D+  FI  I +    ++ N   F +EPKI
Sbjct: 61  TFRIGSFASEKFTKFVHQKPMLSLAKAYNYDDINSFINNISKIVPTENIN---FNIEPKI 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y++GK V AA RGDG  GEDV+  I  I +IP+++  N    +EVRGEV+I+
Sbjct: 118 DGLSIALHYKQGKLVKAATRGDGSEGEDVTENIYQIKSIPKLI--NYLNDLEVRGEVFIT 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           KNDF  +N+             RNAASG LR+L+   +  R L+ F++ + +  +     
Sbjct: 176 KNDFKKINESNNFANA------RNAASGTLRQLDANIVAERNLSAFLYEIVEPEKHGIYY 229

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+E L+ M+ L FP N    +      +    N+   I++ L YD DGLV K+D+  +  
Sbjct: 230 QHEALEFMKNLNFPTN-PFSKVVEIEELEESINDFAEIKNKLDYDADGLVIKLDDLQMWD 288

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG+ ++ P+  I+ K+  + AS++++DI   +GRTG +T +A + PV +    +  ATL
Sbjct: 289 KLGKTSKFPKHSIAFKYDVEIASSKIIDILTSVGRTGKITYIANILPVLLNQTTVKAATL 348

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN ++IK +           +I + D V + +AGE+IPKV+ +   + + D   +   + 
Sbjct: 349 HNHNFIKDM-----------NININDEVNIIKAGEIIPKVISLKEEKNYVDY--YKKATN 395

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++V        + +    CT    C  + +  + HF SR+  NI GLG   +  
Sbjct: 396 CPSCGSQLVE------FEGIVDQFCTND-ECPDKNINNIYHFASRNCLNIVGLGLSTVKD 448

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F+    P F I+   DIF L R +     ++  +  + D+ V N+ +SI   +N    + 
Sbjct: 449 FY----PKF-IKNIKDIFDLHRHR----AELIKLPRYRDLKVDNILNSIESAKNKKFSKV 499

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGI+H+G   A+ +A    +Y NFA+ +++   HN    L L     +G  I ++++
Sbjct: 500 IFALGIKHIGQRAAKLIAD---NYANFAELLDD---HN---LLKLQNTKNIGPKIIESLI 550

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           EF  +P N   + A L  +    G+  K +S+ +     V TG L + + H  +      
Sbjct: 551 EFISSPAN-QDLLAFLDAIFNYEGK-AKVISTILSGYTFVITGVLSEPRSHFVKLIEEHS 608

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G V SAI S KT  ++ G + GSKLEKA + G K++NEEQF  L++Q
Sbjct: 609 GNVSSAI-SSKTSYLLAGSDAGSKLEKAYKTGTKVINEEQFYDLIKQ 654


>gi|169824266|ref|YP_001691877.1| NAD-dependent DNA ligase LigA [Finegoldia magna ATCC 29328]
 gi|254781333|sp|B0RZW0|DNLJ_FINM2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167831071|dbj|BAG07987.1| NAD-dependent DNA ligase [Finegoldia magna ATCC 29328]
          Length = 662

 Score =  313 bits (801), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 210/713 (29%), Positives = 370/713 (51%), Gaps = 82/713 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           K L  +  + +YH   YY    P+I DSEYD L          + +L   E       PN
Sbjct: 8   KYLVDILNKYAYH---YYTLDDPLIADSEYDVL----------YDELVNLEKETGIVLPN 54

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIYRFWQKKDDN------S 125
            P N+IGGE+ LS F+    + TL SL K  + E++R ++ +   F Q  ++N       
Sbjct: 55  SPTNRIGGEV-LSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVQNYNENHVNKLPK 113

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + F +E K DG  + + Y+ G  V A  RG+G  GE +++ ++ I +IP  L +    ++
Sbjct: 114 VEFYVEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIP--LKIKDTRLM 171

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGL 243
           E++GE  +  +     N            N RNAA+G LR L+P  +TR  N   + + +
Sbjct: 172 EIQGEGVMPLSSLENYN----KTHEPKLKNARNAAAGALRNLDPA-VTRERNLDAYFYNV 226

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               +   + Q EM++ +    F +    + A +F  +  + +E+  +R+ +    DG+V
Sbjct: 227 NYLQDNELETQEEMIKFLGDNYFKLYPYEKHATSFEEVSKFIDEIFELRNEIDVLTDGVV 286

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++F  +++LG   + PRW I++KF  ++ +T + +++  +GRTG +TP A LEPV I
Sbjct: 287 IKVNDFKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEI 346

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           G   +  ATL+N D I+            + +R+   V V+R+ +VIP+++  +VN    
Sbjct: 347 GNVTVKRATLNNIDDIE-----------RKQVRLNSEVFVRRSNDVIPEIMG-VVNPDQE 394

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFN 482
           D +    P +CP C S + RD           H  C   ++C+ Q ++R+ HF SR+A N
Sbjct: 395 DTEEIEIPHYCPYCHSELFRD---------GVHIFCPNSMSCTPQLVKRMVHFASRNAMN 445

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GL ++ L+   +      +I+   +I+ +++ Q      +  + GF +    NL ++I
Sbjct: 446 IDGLSEKTLEVLLEK----LNIKSIEEIYDVKKEQ------LMQLDGFKEKKSQNLINAI 495

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +N+ L  FIF+LGI  +G + +  LA+ Y S+ N  +            +  LI++ 
Sbjct: 496 EKSKNVDLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIE 545

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKI 661
            +G++IA+ IVEF+ +     ++++LL   S  I  ++ +N+  +++N   V TG+L   
Sbjct: 546 DIGNVIAEEIVEFFHDETISNSIDSLL---SKGIKIKNPENIEKKLDNLTFVLTGSLVNY 602

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            R +  + ++ LGA VS+ +S+ TD ++ G+  GSKL KA+ LGVK+M E++ 
Sbjct: 603 SRKELTDKLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDEL 655


>gi|158319601|ref|YP_001512108.1| NAD-dependent DNA ligase LigA [Alkaliphilus oremlandii OhILAs]
 gi|190359226|sp|A8MLJ8|DNLJ_ALKOO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158139800|gb|ABW18112.1| DNA ligase, NAD-dependent [Alkaliphilus oremlandii OhILAs]
          Length = 661

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 220/718 (30%), Positives = 363/718 (50%), Gaps = 71/718 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+E+ R +L  +  E SY    YY   +P++ D EYD L      +      +      +
Sbjct: 3   SMERLR-QLVDILNEYSYQ---YYVLDEPVVSDKEYDQLYDELVLLEKELNTVLE----D 54

Query: 73  GPLNKIGGEMNLSLFKV-THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P  ++GG++ L  FK   H  P  SL+K    E+L  +  R+ R  +      I + +E
Sbjct: 55  SPTIRVGGDV-LKNFKAHNHLAPLWSLDKCKTPEELISWDLRVRRLLEG-SGVPIEYVME 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRG 189
            K DG  + + Y  G+ V AA RG+G +GE +   ++ I TIP    L IP    IEV+G
Sbjct: 113 YKFDGLTLNLTYNNGQLVQAATRGNGTTGEGILEQVKTIKTIP----LTIPHKGRIEVQG 168

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248
           E  +  +   A N   +    +P  NPRNAA+G LR L+P     R L+ F + +G    
Sbjct: 169 EGLMGLSVLAAYNKTAL----EPLKNPRNAAAGALRNLDPKVTAKRKLSAFCYNVGFYEG 224

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           I      E+L  ++   FPV+N  ++ +T H ++     +     +L +  DGLV KV+ 
Sbjct: 225 IDFNTHMEILAFLKANKFPVSNYTKKFHTIHQVIEEIETIGEQVKSLDFLTDGLVIKVNH 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              ++ LG   + PRW ++ KF  ++ +T L D+  Q+GRTG LTP A LEP++IGG  +
Sbjct: 285 MEARRLLGYTQKFPRWAMAFKFEAEEMTTELKDVIWQVGRTGKLTPAAVLEPIDIGGVTV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATL+N + I+            + +++G RV ++R+ +VIP+++  I  E    A   
Sbjct: 345 SRATLNNWEDIQ-----------RKKVKIGCRVWIRRSNDVIPEIMGSI-EETLEGAMDI 392

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             P  CP C S VV            AH  C   L+C  Q + R+ H+ SRDA +I G  
Sbjct: 393 EKPQHCPACHSEVVER---------GAHIFCPNSLSCKPQLVSRIVHYASRDAMDIVGFS 443

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+      ++R  AD++ ++        +      FGD    NL ++I   +N
Sbjct: 444 EKTAEQLFEE----LNLRDLADLYEIKYEDLIKLPR------FGDKKARNLLEAIENSKN 493

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L+ F+++LGI +VG + A  LAK+Y S+Q          A    ++  LI +P VGDI
Sbjct: 494 CKLDSFVYALGIPNVGRKTATDLAKHYKSFQ----------AIQEAEFQELITLPDVGDI 543

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +AQ+I++F+++     +V  L+ E    + +  +   +    K +V TGTL+K  R + +
Sbjct: 544 VAQSIIDFFEDEEIKKSVNRLINEGIRPLFKEVEQQENIFLGKTVVVTGTLEKYGRKEIK 603

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFLL 718
           E + +LGA V+  +S+ TD ++ G+  GSKLEKA ++        ++I++E +F  +L
Sbjct: 604 ELLEKLGAKVTGSVSKNTDFLLAGEAAGSKLEKAMEIIASGVETSLRIISEAEFEAML 661


>gi|254779395|ref|YP_003057500.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B38]
 gi|254001306|emb|CAX29287.1| DNA ligase (NAD(+)) [Helicobacter pylori B38]
          Length = 656

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 223/694 (32%), Positives = 354/694 (51%), Gaps = 68/694 (9%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY   + I+ D+ YD L +   A     P+  ++   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDESIVSDAVYDELYQELKAYEEENPNDIQA---NSPTQKVGAITTNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y  GK
Sbjct: 72  KNPHLMRMWSLDDVFNQSELQAWLQRILKVYP-----SASFVCSPKLDGVSLNLLYHHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            + A  RG+G  GE V+   + I  IP  ++ N    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LISATTRGNGLEGELVTNNAKHIANIPHFIAYNGE--IEIRGEVIISKKDFDALNQERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  V+E  +QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVNELGIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA++  ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVNRATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  +   R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                           L C A+  E L HF S+DA NI+GLG + ++  F+ E   F+  
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562
              D++ L         K+E+++      +    NL D+I K +N  L R I +LGI H+
Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621
           G   +++LA+Y L          N++  +  ++L +      G  +A ++V FY  N   
Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMAHSLVNFYASNQEF 556

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I ++  LL   +  +   ++  SS   +K +V TGTL K ++  AQ  +  LGA +++ +
Sbjct: 557 IRSLFDLLNPKNSDMAEEKQKSSSVFSDKTIVLTGTLSKPRQEYAQ-MLENLGAKIASSV 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           S KT+ +I G+NPGSKL  A++ GV ++NEE+ L
Sbjct: 616 STKTNFLIAGENPGSKLALAKKHGVSVLNEEELL 649


>gi|4235374|gb|AAD13190.1| NAD-dependent DNA ligase [Thermus thermophilus]
          Length = 557

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 188/523 (35%), Positives = 296/523 (56%), Gaps = 50/523 (9%)

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           FP+L   + P+ P  ++G     + F+ V H     SL+  +N ++L+ F  RI R   +
Sbjct: 2   FPEL---KSPDSPTEQVGARPLEATFRPVRHPTRMYSLDNAFNFDELKAFEERIERALGR 58

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             +    +T+E K+DG  + + YE G  VY A RGDG  GE+V+  +  IPTIPR L   
Sbjct: 59  --EGPFAYTVEHKVDGLSVNLYYEDGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLK-G 115

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LN 237
           +PE +EVRGEVY+    FL LN+E+   G + + NPRNAA+G LR+ +P    +      
Sbjct: 116 VPERLEVRGEVYMPVEAFLRLNEELEERGARIFKNPRNAAAGSLRQKDPRITAKRGLRAT 175

Query: 238 FFVHGLGKTSEIFAKG---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           F+  GLG   E+  +G   Q+ +L  ++   FPV +G  +A    G+ + Y +    R  
Sbjct: 176 FYALGLG-LEEVEREGVATQFALLHWLKEKSFPVEHGYARAVGAEGVEAVYQDWLKKRRA 234

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LP++ DG+V K+DE +L ++LG  AR+PR+ I++KF  ++  TRLLD+  Q+GRTG +TP
Sbjct: 235 LPFEADGVVVKLDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVAFQVGRTGRVTP 294

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           V  LEPV + G+ ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+
Sbjct: 295 VGILEPVFLEGSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVL 343

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            ++   R  + +P  +P  CP C  R++     K GK+   HRC   L C A++ E ++H
Sbjct: 344 RVLKERRTGEERPIRWPETCPECGHRLL-----KEGKV---HRCPNPL-CPAKRFEAIRH 394

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---G 531
           F SR A +I+GLG++ ++   +       ++  AD++ L++         E+++G    G
Sbjct: 395 FPSRKAMDIQGLGEKLIERLLEK----GLVKDVADLYRLRK---------EDLVGLERMG 441

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
           + S  NL   I + +   LER +++LG+  VG  +AR+LA  +
Sbjct: 442 EKSAQNLLRQIEESKRRGLERLLYALGLPGVGEVLARNLAARF 484


>gi|295698750|ref|YP_003603405.1| DNA ligase, NAD-dependent [Candidatus Riesia pediculicola USDA]
 gi|291157368|gb|ADD79813.1| DNA ligase, NAD-dependent [Candidatus Riesia pediculicola USDA]
          Length = 593

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 195/613 (31%), Positives = 324/613 (52%), Gaps = 55/613 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           LSSL ++I  H   Y+   K  I D EYD + R+ D I     + ++ E+       I  
Sbjct: 10  LSSLRKKIKKHQYLYHILGKSEIPDFEYDLMIRKLDRIEKEISEKSKKEEET-----ILS 64

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++     K+ H  P LSL  ++N  +  KF   I +    +++  I+F  E KIDG  + 
Sbjct: 65  DLRRRSKKIKHYSPMLSLNNVFNQHEYLKFYKNILKIINNQEER-IYFCCELKIDGLAVN 123

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEVYISK 195
           + Y+ G+F  A+ RG+G +GED+S+ I+ I  IP  LS+      +PE+IE+RGE+++  
Sbjct: 124 LVYKNGEFHSASTRGNGETGEDISSKIQYIRDIP--LSIRNRKGYVPELIEIRGEIFMKF 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLG--KTSEIFA- 251
             F   N  +    +K ++NPR+AA G++++++  +I R  LNFF +G G  K +  F  
Sbjct: 182 KKFQEFNSMLKKEKKKTFSNPRSAAIGLVKKVSQKEIIRESLNFFSYGCGLIKLNNTFES 241

Query: 252 -KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q+E L+ ++    P+    +  +    I+ YY  + ++R  L Y IDG+V KV+ F 
Sbjct: 242 PKNQFECLKMLKTWNVPIVENTKMYSCSKKILEYYKNIYNMRDQLDYGIDGIVIKVNSFI 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            QK +G  + +P+W ++ KF  K+  T LLD+  Q+GRTG++TP+A+++ ++  G  I  
Sbjct: 302 YQKIIGHTSYAPKWSVAFKFPAKKKITTLLDVIFQVGRTGVITPIAKIDTISFNGIQINR 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +LHN ++IK L            I +GD+V+V  AG++IPK+   I +          F
Sbjct: 362 VSLHNTNFIKDL-----------GIMIGDKVIVSIAGDIIPKITGKIFDSTSNHINEIVF 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P +CP C S    +   K GK+    RCTGGL+C +Q+   + HFVS+ A NI G+GK  
Sbjct: 411 PKYCPSCFSITQIE---KKGKI----RCTGGLSCLSQRESLINHFVSKKAINIIGIGKMT 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    +       I  P+D+++L+     S        G    +   + +SI K +NI+L
Sbjct: 464 VKKMVQKN----LISDPSDLYSLKFNDLLSLN------GITQATSKKILNSIEKSKNITL 513

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL--VGDII 608
           ERF++SLGI  VG  +++ +A    SYQ F +        + + +L   ++P   +G  I
Sbjct: 514 ERFLYSLGIPGVGYVLSKKIASNSESYQFFLR------ISSGEKYLPC-KIPFKGIGKNI 566

Query: 609 AQAIVEFYQNPRN 621
            + I+ F++   N
Sbjct: 567 TENIISFFKKDHN 579


>gi|303234054|ref|ZP_07320703.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4]
 gi|302494979|gb|EFL54736.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4]
          Length = 662

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 210/713 (29%), Positives = 370/713 (51%), Gaps = 82/713 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           K L  +  + +YH   YY    P+I DSEYD L          + +L   E       PN
Sbjct: 8   KYLVDILNKYAYH---YYTLDDPLIADSEYDVL----------YDELVNLEKETGIVLPN 54

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIYRFWQKKDDN------S 125
            P N+IGGE+ LS F+    + TL SL K  + E++R ++ +   F +  ++N       
Sbjct: 55  SPTNRIGGEV-LSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVENYNENHVNKLPK 113

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + F +E K DG  + + Y+ G  V A  RG+G  GE +++ ++ I +IP  L +    ++
Sbjct: 114 VEFYVEFKFDGLTVDLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIP--LKIKDTRLM 171

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGL 243
           E++GE  +  +     N            N RNAA+G LR L+P  +TR  N   + + +
Sbjct: 172 EIQGEGVMPLSSLENYN----KTHEPKLKNARNAAAGALRNLDPA-VTRERNLDAYFYNV 226

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               +   + Q EM++ +    F +    + A +F  I  + +E+  +R+ +    DG+V
Sbjct: 227 NYLQDNELETQEEMMKFLGDNYFKLYPYEKHATSFEEISKFIDEIFELRNEIDVLTDGVV 286

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++F  +++LG   + PRW I++KF  ++ +T + +++  +GRTG +TP A LEPV I
Sbjct: 287 IKVNDFKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEI 346

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           G   +  ATL+N D I+            + +R+   V V+R+ +VIP+++  +VN    
Sbjct: 347 GNVTVKRATLNNIDDIE-----------RKQVRLNSEVFVRRSNDVIPEIMG-VVNPDQE 394

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFN 482
           D +    P +CP C S + RD           H  C   ++C+ Q ++R+ HF SR+A N
Sbjct: 395 DTEEIGIPHYCPYCHSELFRD---------GVHIFCPNSMSCTPQLVKRMVHFASRNAMN 445

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GL ++ L+   +      +I+   +I+ +++ Q      +  + GF +    NL ++I
Sbjct: 446 IDGLSEKTLEVLLEK----LNIKSIEEIYDVKKEQ------LMQLDGFKEKKSQNLINAI 495

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +N+ L  FIF+LGI  +G + +  LA+ Y S+ N  +            +  LI++ 
Sbjct: 496 EKSKNVDLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIE 545

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKI 661
            +G++IA+ IVEF+ +     ++++LL   S  I  ++ +N+  +++N   V TG+L   
Sbjct: 546 DIGNVIAEEIVEFFHDETISNSIDSLL---SKGIKIKNPENIEKKLDNLTFVLTGSLVNY 602

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            R +  + ++ LGA VS+ +S+ TD ++ G+  GSKL KA+ LGVK+M E++ 
Sbjct: 603 SRKELTDKLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDEL 655


>gi|261749390|ref|YP_003257075.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497482|gb|ACX83932.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 678

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 223/715 (31%), Positives = 368/715 (51%), Gaps = 64/715 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +++S ++  YY  +   I D  +D   R    +    P+     DP+ P  +
Sbjct: 11  KEKIYQLRKKLSEYNYQYYALNTSEISDYNFDKKLRELFLLEKEHPEFY---DPSSPTLR 67

Query: 78  IGGE----MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           IG E     + S++   H     SL+  ++ ++L  +  RI    QK   +S  F  E K
Sbjct: 68  IGVEGKKYADSSIY--YHKYKMYSLQNTYSKKELMTWKKRI----QKSISSS--FVCELK 119

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
            DG  I + Y+ G   +A  RGDG  GE+V   +R I +IP +++  N PE +E+RGE++
Sbjct: 120 YDGVSINLIYKNGFLTHAVTRGDGKKGEEVIENVRTIQSIPLKLIGENHPEYLEIRGEIF 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251
           +    FL +N +    G+ PYANPRN ASG L+  N  ++  R L+  V+ +   +  F 
Sbjct: 180 LPIKKFLEINAKRTRSGKNPYANPRNTASGTLKIQNSKEVYKRTLSCIVYSVRGKNLPFD 239

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             QY+ LQ +R  GF ++  V        I  + +     + TLPY IDG+V KV+E   
Sbjct: 240 -TQYQALQTLRNWGFEISEKVLLCKKIKEIFHFLDYWSQWKQTLPYQIDGIVIKVNEHQN 298

Query: 312 QKQLGERARSPRWMISHKFAEKQAS-TRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           Q  LG   + PRW I++KF  K+ S T+LL++  Q+GRTGI+TPVA + P  I G ++  
Sbjct: 299 QSLLGYTNKYPRWAIAYKFRPKKLSETKLLNLKFQVGRTGIITPVAEVIPKKISGTIVKR 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TL+N  +I+ +            I  GD +L+++ G++IPKV  I + +R  +A P  F
Sbjct: 359 VTLYNHHFIQKM-----------GIHYGDALLLEKGGDIIPKVAKINLKKRLINASPIYF 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C+S  +R  N        +  C     C +Q + +++HFVS  A NI+G+G + 
Sbjct: 408 LTKCPSCRSH-LRKKN-------ESFYCPNNF-CPSQNMRKIQHFVSERAMNIKGIGNEM 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   ++     F   I +D++ L+R       K+  I G  +    +L  +I K ++   
Sbjct: 459 IKKLYQK---GFLYNI-SDLYQLKRE------KLLQIDGVKEKLADSLIKNIEKSKDNPS 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R +++LGI HVG  I++ L + +L+       IN++I     D   L  +  +G  I++
Sbjct: 509 QRVLYALGIPHVGEYISKKLTEKFLN-------INSLIQ---ADEAQLTSISGIGKKISE 558

Query: 611 AIVEFYQNPRNICAVEALLKE---VSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKA 666
           +I  ++    N   VE L+K     S    ++  KN  S IE K  +FTG L  + R+KA
Sbjct: 559 SIKTYFFTKENKKIVENLMKHGLNFSDFYKKNPVKNQYSPIEGKSFLFTGKLSSMTRNKA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
           +  V  LG  V   ++ + + I+VG N GSKLE+  +   +KI+ E+ F+ LL+Q
Sbjct: 619 KNLVELLGGRVFHTVNNQINFIVVGKNFGSKLERCMKKNHIKILTEDIFIKLLEQ 673


>gi|331270357|ref|YP_004396849.1| DNA ligase [Clostridium botulinum BKT015925]
 gi|329126907|gb|AEB76852.1| DNA ligase, NAD-dependent [Clostridium botulinum BKT015925]
          Length = 663

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 221/712 (31%), Positives = 378/712 (53%), Gaps = 64/712 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  ++++  L  E++     YY    P + D +YD   ++ D +            P  
Sbjct: 1   MEGKKQQIYKLVDELNKLAYEYYVLDNPSVADKDYD---KKYDELVQLEKQTGMML-PYS 56

Query: 74  PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLR----KFITRIYRFWQKKDDN--SI 126
           P  ++G +M L+ F K TH     SL K  ++E+++    K I  I  +  K +D    I
Sbjct: 57  PTQRVG-DMVLAKFEKYTHKGKLWSLGKAQSLEEVKDWHNKNIKAINEYNLKHEDKLPPI 115

Query: 127 FFTLEPKIDGTMITIRYE-KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
            + +  K DG  I   Y+ +G  V AA RG G  GED++A  + I T+P  L +N   +I
Sbjct: 116 KYIVTKKFDGLTINCTYDNEGILVTAATRGTGEIGEDITAQAKTIKTLP--LKINNNALI 173

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLG 244
           EV GE  ++K  F    +E   + + P  N RN A+G LR LN  +  R  L+ F + +G
Sbjct: 174 EVHGEAIMTKEAF----EEYNKIAQVPLKNLRNGAAGALRNLNIKETARRNLSAFFYDVG 229

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  +   EML+ ++  G P+++ V+  +T   I      ++ IR+ L YDIDG+V 
Sbjct: 230 YNEGKPFETYSEMLKFIKEQGIPMDDYVKTCSTVEEIEEEIKYIEEIRNDLNYDIDGIVI 289

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
            +D+   ++ +G   + P+W +++KF  ++A+T+L+D++  +GR+G +TP A LEPV IG
Sbjct: 290 AIDDMKSRELIGYTVKFPKWALAYKFEAQEATTKLIDVEWNVGRSGRVTPTAILEPVEIG 349

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  ATL+N D I          R G  +++G  V ++R+ +VIP+++ ++ N    D
Sbjct: 350 GVTVKRATLNNMDDIN---------RKG--VKLGSVVFLRRSNDVIPEIMGVVENSTE-D 397

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI 
Sbjct: 398 TKEIKTPEVCPYCGSEIVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIA 449

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G  ++     F+  D    I+  +D++ +++ +      + N+  FG+    NL D+I K
Sbjct: 450 GFSEKTAGQLFEELD----IKSISDLYRIKKEE------LLNLQRFGEKKAQNLIDAIEK 499

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +N  L  FI++LGI +VG + +  L K +       + + N+ +   DD   LI V  +
Sbjct: 500 SKNCDLPSFIYALGIPNVGKKTSTDLCKKF-------KTLKNLKSATFDD---LISVEDI 549

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIEN-KKLVFTGTLQKIQ 662
           GDI+A++I+EF+++   + +++ LL+  V+P     E+ +   I N K +V TG+L    
Sbjct: 550 GDIVAESIMEFFKDDTILKSIDELLELGVNPEF--QEEEIQENIFNGKTVVVTGSLNSFS 607

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           R + +E +  LGA VS+ +S+KTD +IVG +PGSK EKA +L VKI++E++F
Sbjct: 608 RSEIKEKLQSLGAKVSSSVSKKTDYVIVGKDPGSKYEKAVELNVKIIDEDEF 659


>gi|150388772|ref|YP_001318821.1| NAD-dependent DNA ligase LigA [Alkaliphilus metalliredigens QYMF]
 gi|190359225|sp|A6TLU4|DNLJ_ALKMQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149948634|gb|ABR47162.1| DNA ligase, NAD-dependent [Alkaliphilus metalliredigens QYMF]
          Length = 660

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 216/720 (30%), Positives = 364/720 (50%), Gaps = 84/720 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73
           KE+  L ++++ +   YY   +PI+ D EYD+L          +  L   E+  G     
Sbjct: 5   KEMEQLVKQLNEYSYKYYVLDQPIVSDKEYDSL----------YDQLIELEEKTGHVLLD 54

Query: 74  -PLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P  ++GGE  L  F+    +  L SL+K    E+L  +  RI +  + + ++ I + +E
Sbjct: 55  SPTQRVGGE-PLKKFQSHQHVALLWSLDKAKTAEELVAWEQRIKK--KLESNHEIEYIVE 111

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + YE G+ V AA RG+G  GE +   ++ I  IP  L ++    +E++GE 
Sbjct: 112 YKFDGLTLNLTYENGELVQAATRGNGVVGESIIEQVKTIQAIP--LGVDFNNKMEIQGEG 169

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
            ++ +     N       ++P  NPRNAA+G LR L+P     R L  F + +G    + 
Sbjct: 170 LMAISTLAQYNK----TAKEPLKNPRNAAAGALRNLDPKVTAKRKLGAFCYSIGYYEGME 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   +M+  ++   FPV+N ++       ++    E+++    L Y  DG+V KV++  
Sbjct: 226 FETHIQMIDFLKKNRFPVSNYIKSCKGIDQVIEQIREVEAGMKELDYLTDGIVIKVNDLR 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + PRW I++KF  ++ +T+L  +  Q+GRTG LTP A+LEPV I G  ++ 
Sbjct: 286 TREILGYTQKFPRWAIAYKFEAQEVTTKLEAVLWQVGRTGKLTPAAQLEPVEIAGVTVSR 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N + I+            + ++VG +V ++R+G+VIP+++  I  E   +A     
Sbjct: 346 ATLNNWEDIQ-----------RKKVKVGCQVWLRRSGDVIPEIMGAI-EETCEEAVEIEK 393

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHR-----CTGGLACSAQQLERLKHFVSRDAFNIEG 485
           P  CP C S +V             HR     C   L+C  Q + R+ H+ SRDA +IEG
Sbjct: 394 PQHCPACDSEIV-------------HRGVHIFCPNSLSCKPQLVSRIVHYASRDAMDIEG 440

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+    A  ++  A ++ L+        +      FGD    NL D+I + 
Sbjct: 441 FSEKTAEQLFE----ALGLKNIAALYELKYEDLIQLER------FGDKKAKNLLDAIEES 490

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L+ FI++LGI +VG + A  LA Y+        ++  I   N D+   L+ +P +G
Sbjct: 491 KTCKLDAFIYALGIPNVGRKTAADLANYF-------GDLEKIQRANYDE---LVVLPDIG 540

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            I+AQ+IV F+++ + I ++E LL E      + +    S    K +V TGTL+   R +
Sbjct: 541 GIVAQSIVGFFEDEKIIKSIELLLAEGIKPQHKMKNRQESIFSGKTVVVTGTLENYGRKE 600

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFLL 718
            Q  + + GA VS  +S+ TD +I GDN GSKL+KAQ++        ++I++E  F  LL
Sbjct: 601 IQTLLEEQGAKVSGSISKNTDFVIAGDNAGSKLKKAQEILESGVETNLQILDEAAFEALL 660


>gi|297588239|ref|ZP_06946882.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516]
 gi|297573612|gb|EFH92333.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516]
          Length = 662

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 208/712 (29%), Positives = 362/712 (50%), Gaps = 80/712 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           K L  +  + +YH   YY    P+I DSEYD L          + +L   E       PN
Sbjct: 8   KYLVDILNKYAYH---YYTLDDPLIEDSEYDVL----------YDELVNLEKETGIVLPN 54

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SI 126
            P N+IGGE+     K  H     SL K  + E++R ++ +   F +  + N       +
Sbjct: 55  SPTNRIGGEVLSGFEKHVHLNTLYSLGKAQSKEEVRNWVNKTIEFVENYNKNHVNKLPQV 114

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            F +E K DG  + + Y+ G  V A  RG+G  GE +++ +R I +IP  L +    ++E
Sbjct: 115 EFYVEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVRTINSIP--LKIKDTRLME 172

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGLG 244
           ++GE  +  +     N            N RNAA+G LR L+P  +TR  N   + + + 
Sbjct: 173 IQGEGVMPLSSLEKYN----QTHEPKLKNARNAAAGALRNLDPA-VTRERNLDAYFYNVN 227

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              E   + Q +M++ +    F +    + A +F  I  + +E+  +R+ +    DG+V 
Sbjct: 228 YLEENVLETQEQMMKFLGDNYFKLYPYEKHATSFEEISEFIDEIFELRNEIDVLTDGVVI 287

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++F  +++LG   + PRW I++KF  ++ +T + +++  +GRTG +TP A LEPV IG
Sbjct: 288 KVNDFKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIG 347

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              +  ATL+N D I+            + +R+   V V+R+ +VIP+++  +VN    D
Sbjct: 348 NVTVKRATLNNIDDIE-----------RKQVRLNSEVFVRRSNDVIPEIMG-VVNPDQED 395

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNI 483
            +    P +CP C S + RD           H  C   ++C+ Q ++R+ HF SR+A NI
Sbjct: 396 TEEIEIPHYCPYCHSELFRD---------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNI 446

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GL ++ L    +      +I    +I+ +++ Q      +  + GF +    NL ++I 
Sbjct: 447 DGLSEKTLKVLLEK----LNITSIEEIYDVKKEQ------LMQLEGFKEKKSQNLINAIE 496

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +N+ L  FIF+LGI  +G + +  LA+ Y S+ N  +            +  LI++  
Sbjct: 497 KSKNVDLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFDELIQIED 546

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQ 662
           +G++IA+ IVEF+ +     ++++LL   S  I  ++ +N+  +++N   V TG+L    
Sbjct: 547 IGNVIAEEIVEFFHDETISHSIDSLL---SKGIKIKNPENIEKKLDNLTFVLTGSLVNYS 603

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           R +  + ++ LGA VS+ +S+ TD ++ G+  GSKL KA+ LGVK+M E++ 
Sbjct: 604 RKELTDKLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDEL 655


>gi|78777542|ref|YP_393857.1| NAD-dependent DNA ligase LigA [Sulfurimonas denitrificans DSM 1251]
 gi|123768611|sp|Q30QV9|DNLJ_SULDN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78498082|gb|ABB44622.1| DNA ligase (NAD+) [Sulfurimonas denitrificans DSM 1251]
          Length = 652

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 218/701 (31%), Positives = 364/701 (51%), Gaps = 75/701 (10%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS--ED--PNGPLNKIGGEMNL 84
           SYH   YY     I  D  YD L        H   +   S  ED   N P  ++G  ++ 
Sbjct: 17  SYH---YYVLDDAITTDEVYDKL-------YHEVLEYEESHKEDILKNSPTQRVGDTVSE 66

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
              K  H     SLE +++ + L+K++ + Y+      D++I F  EPK DG  + + YE
Sbjct: 67  GFSKAPHLSRMWSLEDVFDSDGLQKWLIKTYKL-----DSNISFYCEPKYDGASLNLIYE 121

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            G+   A  RGDG  GE ++  ++ I ++P  LS+   E IE+RGEV I K++F  +N  
Sbjct: 122 NGELSQAITRGDGEVGELITQNVKTIRSVP--LSIEHKEKIEIRGEVVIFKDEFEKINQT 179

Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR- 262
            +  G   +ANPRNAA+G LR+L+ +   +R L F  +G+G   E F + +  + QKM  
Sbjct: 180 RLKDGEALFANPRNAAAGSLRQLDSSITASRNLVFLPYGVG---ENFLEHKL-LSQKMEY 235

Query: 263 --CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
              LGF           F+ I + Y EM   R + P  +DG+V KVDE + Q  +G   +
Sbjct: 236 IYSLGFKKPPFCATCKDFNEIEAVYQEMSRNRDSYPMMLDGMVVKVDEIAAQIDMGYTVK 295

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PR+ +++KF   +  T + +I +Q+GRTG +TPVA +EP NI G ++  ATLHN D I+
Sbjct: 296 NPRFSVAYKFPAVEKITTIKEIILQVGRTGAVTPVAIVEPTNIDGVVVERATLHNFDEIQ 355

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                       +DIR+ D V++ R+G+VIPK++ ++ +ER      +  P+ CP+C+S 
Sbjct: 356 -----------RKDIRINDHVIILRSGDVIPKIIKVLTHERDGSEVEYKRPTICPVCESE 404

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           ++ +     G L+   +C   L C A+ +  + +F S+   NI+GLG + ++  F S   
Sbjct: 405 LLDE-----GVLL---KCQ-NLTCEARVINSIIYFASKPCLNIDGLGVKIVEALFNSG-- 453

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              ++   D+F L   +  +        GF +    NL D++   +     RF+ SLGI 
Sbjct: 454 --LVKSVVDLFDLTLEKLLTLE------GFKEKKAQNLLDALGSAKGCEYWRFVNSLGIE 505

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ-NP 619
           H+G   +++L+  + S           I    D+   ++    VG+ +A++++EF + N 
Sbjct: 506 HIGEVASKTLSAKFGS---------GFIDATKDE---IVACDGVGEEMAESLLEFIRVNR 553

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
             I  ++ +LK + P + R E    +  + K +V TG++ +  R   +E +  LGA V +
Sbjct: 554 ETILKLQNILKPLEP-LQRQEAK-ENPFKGKSVVLTGSMSE-SRDMIKEMLESLGAKVVS 610

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +S+KTD +I G++ GSK +KA  LGV+ +NE++    ++Q
Sbjct: 611 SVSKKTDFVIYGEDAGSKYDKAMDLGVECLNEDEMRSKIEQ 651


>gi|302874256|ref|YP_003842889.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B]
 gi|307689480|ref|ZP_07631926.1| NAD-dependent DNA ligase LigA [Clostridium cellulovorans 743B]
 gi|302577113|gb|ADL51125.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B]
          Length = 665

 Score =  311 bits (796), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 212/723 (29%), Positives = 370/723 (51%), Gaps = 74/723 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I  ++K +  L ++++     YY    P I D EYD L          + +L   E  
Sbjct: 1   MEISDSKKRIEELIEQLNKFAYEYYALDNPSISDKEYDKL----------YDELTILEKE 50

Query: 72  NG------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDN 124
            G      P  ++G  +     K  H     SL+K  + E++ ++  R +    Q   +N
Sbjct: 51  TGYILSYSPTQRVGDGILSQFSKYIHKGRLWSLDKAQSFEEIIEWHNRNVKAVMQYNKEN 110

Query: 125 S-----IFFTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
           +     + + +  K DG  +   Y+  G  + AA RG G  GED++A  + I  +P  L 
Sbjct: 111 ADKLPPLEYVITKKFDGLTLNCTYDNDGIMIKAATRGTGEIGEDITAQAKTIKALP--LK 168

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237
           ++   + E+ GE  ++K  F A N++          N RN A+G LR LN  +   R L+
Sbjct: 169 VDHKGLFEIHGEAIMTKEAFDAYNEK----AEVKLKNLRNGAAGALRNLNLKETAKRNLS 224

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F + +G       +   +M++ +R   FP+++ ++ A     I +    + SIR+ L Y
Sbjct: 225 AFFYDVGYNEGDPFESYIDMMKFIREKNFPIDDYMKIARDTEDIKNEIEYINSIRADLNY 284

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V  +++   +  LG   + P+W I++KF  ++ +T LLD++  +GR+G ++P A 
Sbjct: 285 DIDGIVIVINDMRTRAVLGYTIKFPKWAIAYKFEAEETTTELLDVEWNVGRSGRVSPTAL 344

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV++GG  +  ATL+N D IK            +++++G+RV V+R+ +VIP+++   
Sbjct: 345 LEPVDLGGVTVKRATLNNMDDIK-----------RKNVKIGNRVFVRRSNDVIPEIMG-- 391

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFV 476
           V E   +A+    PS CP C S ++         LV AH  C   L+C  Q ++ + HF 
Sbjct: 392 VAEELENAREIIAPSNCPSCGSELM---------LVGAHYFCENTLSCKPQMVKSIVHFG 442

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR+A NIEG  ++  +  ++  D    ++  +D++ L++ +      + N+  FGD    
Sbjct: 443 SREAMNIEGFSEKTAEQLYEKVD----LKTLSDLYKLKKEE------LLNLEKFGDKKAQ 492

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL D+I K +   L  FI++LGI +VG + A+ L K   S +   +            + 
Sbjct: 493 NLLDAIEKSKECELASFIYALGIPNVGKKTAKDLCKNLKSLEGIKKAT----------YE 542

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFT 655
            L+ +  +G+I+A+ I+EF+ + + + +++ LL   VSPS      N  S   +K +V T
Sbjct: 543 DLLAIEDIGEIVAKCIIEFFSDEKILRSIDELLAVGVSPSYEETLVNDQSSFMDKTVVVT 602

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL+   R + ++ +  LGA VS  +S+KTD +I G+  GSK +KA  LG+KI++EE+FL
Sbjct: 603 GTLKNFSRTEIKDKLEALGAKVSGTVSKKTDYVIAGEAAGSKYDKAISLGIKILSEEEFL 662

Query: 716 FLL 718
            ++
Sbjct: 663 AMI 665


>gi|4235380|gb|AAD13193.1| NAD-dependent DNA ligase [Thermus sp. Vil3]
          Length = 505

 Score =  311 bits (796), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 184/509 (36%), Positives = 284/509 (55%), Gaps = 38/509 (7%)

Query: 70  DPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P  ++G +   + F+ + H     SL+  + +E++R F  RI R   +K      +
Sbjct: 2   SPDSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFTLEEVRTFEERIERALGRK--GPFVY 59

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T+E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  IPTIPR L   +PE +EVR
Sbjct: 60  TVEHKVDGLSVNLYYEEGILVWGATRGDGETGEEVTQNLLTIPTIPRRLK-GVPERLEVR 118

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGK 245
           GEVY+    FL LN+E+   G K + NPRNAA+G  R+ +P    R      F+  GLG 
Sbjct: 119 GEVYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSFRQKDPRITARRGLRATFYALGLG- 177

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             E   K Q ++L  +R  GFPV +G  +A    G+   Y      R +LP++ DG+V K
Sbjct: 178 LEESGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVK 237

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +DE SL ++LG  AR+PR+ I++KF  ++  T L  + +Q+GRTG +TPV  LEPV I G
Sbjct: 238 LDELSLWRELGYTARAPRFAIAYKFPAEEKETALFQVVLQVGRTGQVTPVGILEPVFIEG 297

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + ++  TLHNE YI+ L           D+R+G+ VLV  AG VIP+V+ ++  +R  + 
Sbjct: 298 SEVSRVTLHNESYIEDL-----------DVRIGEWVLVHNAGGVIPEVLRVLKEKRTGEE 346

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P  +P  CP C  R+V     K GK+   HRC   L C A++ E ++H+ SR A +I G
Sbjct: 347 RPIRWPETCPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIGG 397

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ ++   +         +  D+  L R ++     +E +   G  S  NL   I K 
Sbjct: 398 LGEKLIEKLLEKG-------LVKDVADLYRLKEEDLVGLERM---GKKSAQNLLRQIEKS 447

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY 574
           +   LER +++LG+  VG  +AR+LA ++
Sbjct: 448 KARGLERLLYALGLPGVGEVLARNLAAHF 476


>gi|295135415|ref|YP_003586091.1| DNA ligase [Zunongwangia profunda SM-A87]
 gi|294983430|gb|ADF53895.1| DNA ligase [Zunongwangia profunda SM-A87]
          Length = 812

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 168/474 (35%), Positives = 263/474 (55%), Gaps = 26/474 (5%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L +E+ +H+  YY    P I D ++D   +    +    P+     DPN P  ++GG +
Sbjct: 9   TLREELQHHNYQYYVLDNPEISDYDFDMKLKELQELEEKHPEF---NDPNSPTQRVGGAV 65

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
             +   V H     SL   ++ E+L+ + TRI    +K  D  I +T E K DG  +++ 
Sbjct: 66  TKNFTTVVHDYRMYSLSNSYSKEELQDWETRI----RKLVDGDIKYTCELKYDGASMSLM 121

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           Y+KG+ V A  RGDG  G+DV+  ++ I ++P  L  + PE   +RGE+ +    F  LN
Sbjct: 122 YDKGQLVQAVTRGDGFQGDDVTNNVKTIRSVPLKLRGDYPEKFHIRGEIVLPFEGFAKLN 181

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
            E +  G +PYANPRN ASG L+  +  ++  R L+  ++ +   + +    Q+E L+K 
Sbjct: 182 AERVENGEEPYANPRNTASGSLKLQDSAEVAKRPLDCLLYNIAGEN-LPISSQFESLEKA 240

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           R  GF V       N    ++SY N     R  LPY+ DG+V KV++F  Q++LG  A+S
Sbjct: 241 RDWGFKVPAESELKNNIEEVLSYINYWDIHRHDLPYETDGVVVKVNDFGQQEELGYTAKS 300

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW +++KF  +Q +T+L  I  Q+GRTG +TPVA LEPV + G ++  A+LHN D I  
Sbjct: 301 PRWAMAYKFKAEQETTKLHKITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIAK 360

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
           L           DIR GD+V V++ GE+IPK+V +   +R PD++P ++  +CP C + +
Sbjct: 361 L-----------DIREGDKVFVEKGGEIIPKIVGVDFKQRDPDSEPTTYAIYCPECGTEL 409

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            R    K G+  A H C   + C  Q + R++HFVSR A +I+GLGK  ++  +
Sbjct: 410 QR----KEGE--AQHFCPNYVGCPPQIIGRMEHFVSRKAMDIDGLGKGTIEILY 457



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 109/188 (57%), Gaps = 14/188 (7%)

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +  N+ +S+ + +  + ++ +F+LGIR VG   AR +A+++ +       I+ ++A N +
Sbjct: 637 TTENILNSVEESKKRTFDKVLFALGIRDVGEVSARKIAEHFGN-------IDKLMAANTE 689

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKL 652
           +   LI++  VG+ +A +I+EF+ +  NI  V+  L+E        EK  SS ++E    
Sbjct: 690 E---LIQLRDVGERVAASIIEFFTDEENIDIVKR-LREKDLQFEMEEKETSSNKLEGLSF 745

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711
           V +GT   I R + ++++ + G    + LS+ T+ +IVG+  G SK  KA++ G+ +++E
Sbjct: 746 VVSGTFS-ISRSELKKHIEENGGKNLSSLSKSTNYLIVGEKMGPSKKVKAEKEGIAMISE 804

Query: 712 EQFLFLLQ 719
           E+F  +++
Sbjct: 805 EEFFKMIE 812


>gi|313681943|ref|YP_004059681.1| DNA ligase, nad-dependent [Sulfuricurvum kujiense DSM 16994]
 gi|313154803|gb|ADR33481.1| DNA ligase, NAD-dependent [Sulfuricurvum kujiense DSM 16994]
          Length = 676

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 219/690 (31%), Positives = 353/690 (51%), Gaps = 66/690 (9%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           SYH   YY    PI  D EYD L  +  A  H  P    S+ P     ++G        K
Sbjct: 17  SYH---YYVLDDPITTDEEYDILYHKVVAYEHEHPSEIISDSPT---QRVGDVPQDKFDK 70

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
             H     SLE +++ E+L  ++ RI + +       + F  EPK DG  + + Y+KG  
Sbjct: 71  AQHLSRMWSLEDLFDREELETWVNRITKGY-----GDVRFYCEPKFDGASLNLIYDKGVL 125

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
           V A  RGDG  GEDV+   + I +IP  L +     IE+RGEV I K DF  +N E    
Sbjct: 126 VQAITRGDGVEGEDVTQNAKTIQSIP--LRIEYKGRIEIRGEVVIFKEDFEKINLERSRN 183

Query: 209 GRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG-KTSEIFAKGQYEMLQKMRCLG 265
           G   +ANPRNAA+G LR+L+ T IT  R L F  +G+G  T EI  K   E ++ +  LG
Sbjct: 184 GESLFANPRNAAAGSLRQLD-TRITASRRLVFMPYGIGANTLEI--KNLSERMEWVYGLG 240

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F   +      +   I ++Y+EM+  R      +DG+V KVD  ++Q +LG   ++PRW 
Sbjct: 241 FRNPHMTHLCESADQIETFYHEMRVERDNFAMLLDGMVIKVDSIAVQDELGYTVKNPRWA 300

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T L ++ +Q+GR+G++TPVA +EPV+I G  +  +TLHN D I+     
Sbjct: 301 AAYKFPAIEKLTTLKEVIMQVGRSGVVTPVAIVEPVDIEGVTVERSTLHNFDEIE----- 355

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  +DIR+GD+V++ R+G+VIPK+V +I  ER    Q    P+ CP+C S ++ + 
Sbjct: 356 ------RKDIRIGDKVIILRSGDVIPKIVKVITAERTGSEQVIPRPTQCPVCGSELLDE- 408

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
               G L+   +C   + C A+ +  + +F S+   NI+GLG    D   ++   A  + 
Sbjct: 409 ----GALI---KCQ-NMGCEARVVNSIIYFASKQCLNIDGLG----DKIVEALHSAGMVH 456

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
             +D+F L   Q  S      + GF +    NL D+I   +     RFI +LGI H+G  
Sbjct: 457 EVSDLFGLTMDQLLS------LEGFKEKKSRNLLDAIAAAKGCDCWRFINALGIEHIGEV 510

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ-NPRNICA 624
            +++L   + +            A +      ++ +   G  + ++I+EF + N   I  
Sbjct: 511 ASKTLCGAFGT------------AFDRSSREEILALEGFGGEMVESILEFVRVNSEKIER 558

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           + ++L   +P      +N     + K +V TG++  + R   +  + +LGA V++ +S+K
Sbjct: 559 LRSILNPAAPVKIEAAEN---PFKGKSVVITGSMS-VPRDHIKVMLEELGAKVASSVSKK 614

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TD ++ G++ G+K +KA +LGV ++ E +F
Sbjct: 615 TDYVVYGEDAGNKYDKAVELGVTLLTESEF 644


>gi|187932891|ref|YP_001884644.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B str. Eklund
           17B]
 gi|254781292|sp|B2TIZ7|DNLJ_CLOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187721044|gb|ACD22265.1| DNA ligase, NAD-dependent [Clostridium botulinum B str. Eklund 17B]
          Length = 667

 Score =  309 bits (792), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 220/712 (30%), Positives = 358/712 (50%), Gaps = 69/712 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPII----LDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           KEL  +  + SY    YY    P +     D EYD LK          P          P
Sbjct: 9   KELVEILNKYSYD---YYVLDNPSVSDKDYDKEYDELKLLEKETGFVLP--------YSP 57

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF-----WQKKDDNSIFFT 129
             +IG  +     K TH     SL+K  ++++++ +  R  +F      Q +D   + + 
Sbjct: 58  TLRIGDVVLQGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNIKFVNEMRAQGEDLPDLKYI 117

Query: 130 LEPKIDGTMITIRYEKGKFV-YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
              K DG  + + Y KG  +  +A RG+G  GE+V++ ++ I +IP  L  N  ++ EV 
Sbjct: 118 ATKKFDGLTVNLTYNKGGMLEVSATRGNGEIGENVTSQVKTIKSIPLKLQEN-DDLFEVH 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GE  +++  F   N    A    P  N RN A+G LR LN  +  R  L+ F + +G   
Sbjct: 177 GEAIMTQEAFEKYN----ASADIPLKNLRNGAAGALRNLNIKETARRDLSAFFYDVGYKE 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EM+  ++  G P++  ++   +   I      ++ IR  L YDIDGLV  +D
Sbjct: 233 GYQFKTYLEMMDFIKEKGLPIDEYLKVCTSIDDIKKEIEYIEKIRFDLNYDIDGLVIAID 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G + P A LEPV + G  
Sbjct: 293 DIRTRELLGYTVKYPKWAIAYKFEAQEATTKLLDVEWNVGRSGRIGPTAILEPVELAGVT 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D IK         R G  +R+G  V V+R+ +VIP+++  + N    +++ 
Sbjct: 353 VKRATLNNMDDIK---------RKG--VRIGADVFVRRSNDVIPEIMGTLENTLE-NSEE 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              P+ CP C S VV         L  AH  C   L+C  Q ++ + H+ SRDA NI G 
Sbjct: 401 ICPPTECPACGSHVV---------LNGAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGF 451

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++  +  F+      +I+  +D++ L++        + N+  FG+    NL ++I K +
Sbjct: 452 SEKTAEQLFEK----LNIKSISDLYKLKKED------LINLEKFGEKKSENLLNAIEKSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  L  FI++LGI +VG + A+ +   + S          I    N  +  L+ V  VGD
Sbjct: 502 DCKLYSFIYALGIPNVGVKTAKDIVNKFKS----------IDGLKNATFEELVSVQDVGD 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+AQ ++EF++  + I  ++ LL      I    K V S  ++K +V TGTLQ   R + 
Sbjct: 552 IVAQDVIEFFKEEKVINTIDELLNLGVNPIFDEVKIVESIFKDKTVVTTGTLQNYSRTEI 611

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA VS  +S+KTD +I G++ GSKL KA++LGVKI++EE+F  +L
Sbjct: 612 KTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVKIISEEEFEKML 663


>gi|12045108|ref|NP_072919.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
 gi|1352291|sp|P47496|DNLJ_MYCGE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3844852|gb|AAC71474.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
 gi|166078824|gb|ABY79442.1| DNA ligase, NAD-dependent [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 659

 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 213/702 (30%), Positives = 364/702 (51%), Gaps = 64/702 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++L +L +   YH   YY  S+P+I D EYD L +    +    PDL + +    P  ++
Sbjct: 9   QQLVNLIKNYDYH---YYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQID---SPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE      K+ H+ P LSLE  ++ +++  FI  I   +Q    N   F +EPKIDG  
Sbjct: 63  GGEAVKGFKKLNHNSPMLSLENAFSTKEIANFIDNIN--FQTNSKNE--FVVEPKIDGVS 118

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ Y+ G  V+A  RGDG  GEDV   ++ I +IP  L++   + IE+RGE+++ K  F
Sbjct: 119 ISLTYKNGVLVHALTRGDGSVGEDVLNNVKTIKSIP--LTIPFTKTIEIRGEIFVDKKTF 176

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYE 256
           LA+N+++     KP+AN RN A+G +R LN ++IT  R L    + +    E     Q  
Sbjct: 177 LAINNQL----EKPFANARNLAAGTIRNLN-SEITAQRKLRALFYYIPNGLEESITTQTM 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L++++   FPV++ +R       +++Y       R  L +++DGLV K++     +QLG
Sbjct: 232 VLEQLKQWKFPVSDTIRVFQNKFQLINYLEAFDKKREQLTFNLDGLVIKLNSLLFYQQLG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW I+ KF+ K   T+L  + I IGRTG +   A+LE VN+ G  +T ATLHN 
Sbjct: 292 ATSKSPRWAIAFKFSPKFVQTKLTAVLITIGRTGRVNYTAKLESVNLDGTKVTAATLHNF 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+ D V++ +AGE+IPKV+ + + +R  D        +CP 
Sbjct: 352 DYIK-----------TKDIRINDTVVIYKAGEIIPKVLKVNLEKRKNDTIIIQEQKYCPS 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S++V+ ++           CT    C  + ++ + +FVS+ A +I GL    +   ++
Sbjct: 401 CNSKLVKIVDE------VDQYCTNE-TCKERNIQLINYFVSKTAMDINGLNINTITKLYE 453

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +R   D++ L+ ++     K++  L  GD     L D+I   +   + R +  
Sbjct: 454 HN----LVRSIVDLYDLKDKKN-QVLKLD--LKIGDKLFNKLVDNIENSKQKGMARLLTG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI+HVG  +A++LA ++           NI A  +    +LI +  VG  +A+++  ++
Sbjct: 507 LGIKHVGNVLAKNLANHF----------KNIKALQHASLENLISLNDVGITVAESLYNWF 556

Query: 617 QNPRNICAVEAL-LKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +P ++  +E L L++V     P     E N  S    K+ + TG+   I R + ++ ++
Sbjct: 557 HDPNHLQLIEQLELRQVKTDQLPLKINFETN--SIYFQKRFLITGSFN-ISRDQIKDLLS 613

Query: 672 -QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711
            +     ++ +    D +I G+ P   K+  A++L + I+NE
Sbjct: 614 AKFDCQFASEVKPTVDFVIAGNKPTLRKINHAKELNIPIINE 655


>gi|255660255|ref|ZP_05405664.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
          Length = 658

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 213/702 (30%), Positives = 364/702 (51%), Gaps = 64/702 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++L +L +   YH   YY  S+P+I D EYD L +    +    PDL + +    P  ++
Sbjct: 8   QQLVNLIKNYDYH---YYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQID---SPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE      K+ H+ P LSLE  ++ +++  FI  I   +Q    N   F +EPKIDG  
Sbjct: 62  GGEAVKGFKKLNHNSPMLSLENAFSTKEIANFIDNIN--FQTNSKNE--FVVEPKIDGVS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ Y+ G  V+A  RGDG  GEDV   ++ I +IP  L++   + IE+RGE+++ K  F
Sbjct: 118 ISLTYKNGVLVHALTRGDGSVGEDVLNNVKTIKSIP--LTIPFTKTIEIRGEIFVDKKTF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYE 256
           LA+N+++     KP+AN RN A+G +R LN ++IT  R L    + +    E     Q  
Sbjct: 176 LAINNQL----EKPFANARNLAAGTIRNLN-SEITAQRKLRALFYYIPNGLEESITTQTM 230

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L++++   FPV++ +R       +++Y       R  L +++DGLV K++     +QLG
Sbjct: 231 VLEQLKQWKFPVSDTIRVFQNKFQLINYLEAFDKKREQLTFNLDGLVIKLNSLLFYQQLG 290

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW I+ KF+ K   T+L  + I IGRTG +   A+LE VN+ G  +T ATLHN 
Sbjct: 291 ATSKSPRWAIAFKFSPKFVQTKLTAVLITIGRTGRVNYTAKLESVNLDGTKVTAATLHNF 350

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+ D V++ +AGE+IPKV+ + + +R  D        +CP 
Sbjct: 351 DYIK-----------TKDIRINDTVVIYKAGEIIPKVLKVNLEKRKNDTIIIQEQKYCPS 399

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S++V+ ++           CT    C  + ++ + +FVS+ A +I GL    +   ++
Sbjct: 400 CNSKLVKIVDE------VDQYCTNE-TCKERNIQLINYFVSKTAMDINGLNINTITKLYE 452

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +R   D++ L+ ++     K++  L  GD     L D+I   +   + R +  
Sbjct: 453 HN----LVRSIVDLYDLKDKKN-QVLKLD--LKIGDKLFNKLVDNIENSKQKGMARLLTG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI+HVG  +A++LA ++           NI A  +    +LI +  VG  +A+++  ++
Sbjct: 506 LGIKHVGNVLAKNLANHF----------KNIKALQHASLENLISLNDVGITVAESLYNWF 555

Query: 617 QNPRNICAVEAL-LKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +P ++  +E L L++V     P     E N  S    K+ + TG+   I R + ++ ++
Sbjct: 556 HDPNHLQLIEQLELRQVKTDQLPLKINFETN--SIYFQKRFLITGSFN-ISRDQIKDLLS 612

Query: 672 -QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711
            +     ++ +    D +I G+ P   K+  A++L + I+NE
Sbjct: 613 AKFDCQFASEVKPTVDFVIAGNKPTLRKINHAKELNIPIINE 654


>gi|111115379|ref|YP_709997.1| DNA ligase [Borrelia afzelii PKo]
 gi|123145685|sp|Q0SMV7|DNLJ_BORAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110890653|gb|ABH01821.1| DNA ligase [Borrelia afzelii PKo]
          Length = 660

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 213/707 (30%), Positives = 365/707 (51%), Gaps = 67/707 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +    P+    + P    
Sbjct: 4   KIQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKCPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS+P LSL+K++N++ L+ +I +I         NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSVPVLSLDKVYNLDLLKSWIDKI------DFSNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  IR I  +P  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHVPLFLGEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLDF-KTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++K++ LGF VN  +R   Q ++   +++Y  ++   R++  Y+IDG+V KV +F+L
Sbjct: 228 NLAIEKLKKLGFKVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG     P+W +++KF      +++  I +Q+GR+G +TPVA ++ V + GA ITNA
Sbjct: 288 REKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFITNA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  +           ++ VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYITSI-----------NLNVGDIVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DKCPSCKTVVVKE---------GAHFFCTNNNCPSVAVERIKYFCSKNCMDIEGFSDKTI 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T       +  K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FISSEIDLYTF------NFYKLLKFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +    +  +L+L+++  +G+ IA  
Sbjct: 495 KLLLSIGIKELGENTIRLL---FLNNLNSFSKLFRLCQDRDFAFLTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLV-----FTGTLQKIQRHK 665
           I++ + N   I        +V  ++G + E+ +  + ENK LV      TG+     R  
Sbjct: 552 IIDAFNNSIMINKF-----KVFENLGFKMEERILIDDENKLLVGKKFCITGSFNGYSRPI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
             + +   GA+    +++  D ++VG+  G+KL+KA  L VKIM+ E
Sbjct: 607 VIDKLENKGAIFKTCVTKGLDFLVVGEKAGTKLKKALNLNVKIMSFE 653


>gi|148377548|ref|YP_001256424.1| DNA ligase [Mycoplasma agalactiae PG2]
 gi|254781374|sp|A5IY71|DNLJ_MYCAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148291594|emb|CAL58980.1| DNA ligase [Mycoplasma agalactiae PG2]
          Length = 654

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 228/707 (32%), Positives = 370/707 (52%), Gaps = 57/707 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A++ + SL ++I+  +  YYQ +KP + D EYD      + +    PDL  S   N P
Sbjct: 4   EEAKELIKSLVEKINQWNYEYYQLNKPSVSDLEYDKALLELEKLEKEHPDLILS---NSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +IG   +    K  +  P LSL K +N +D+  FI  I +    ++ N   F +EPKI
Sbjct: 61  TFRIGSFASEKFTKFVYQKPMLSLAKAYNYDDINSFINNISKIVPTENIN---FNIEPKI 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I +RY++GK V AA RGDG  GEDV+  I  I +IP+++  N    +EVRGEV+I+
Sbjct: 118 DGLSIALRYKQGKLVKAATRGDGSEGEDVTENIYQIKSIPKLI--NYFNDLEVRGEVFIT 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           KNDF  +N+             RNAASG LR+L+   +  R L+ F++ + +  +     
Sbjct: 176 KNDFKKINESNNFANA------RNAASGTLRQLDANIVAERNLSAFLYEIVEPEKHGIYY 229

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+E L+ M+ L FP N    +      +    ++   I++ L YD DGLV K+++  +  
Sbjct: 230 QHEALEFMKNLDFPTN-PFSKVVEIEELEESISDFAEIKNKLDYDADGLVIKLNDLQMWD 288

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG+ ++ P+  I+ K+  + AS+R+ DI   +GRTG +T +A + PV +    +  ATL
Sbjct: 289 KLGKTSKFPKHSIAFKYDVEVASSRITDILTSVGRTGKITYIANILPVLLNQTTVKAATL 348

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN ++IK +           +I + D V + +AGE+IPKV+ +   + + D   +   + 
Sbjct: 349 HNHNFIKDM-----------NININDEVNIIKAGEIIPKVISLKEEKNYVDY--YKKATN 395

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++V        + +    CT    C  + +  + HF SR+  NI GLG   +  
Sbjct: 396 CPSCGSQLVE------FEGIVDQFCTND-ECPDKNINNIYHFASRNCLNIVGLGLSTVKD 448

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F+    P F I+   DIF L + +     ++  +  + D+ V N+ +SI   +N    + 
Sbjct: 449 FY----PKF-IKNIKDIFDLHKYR----AELIKLPRYRDLKVDNILNSIESAKNKKFSKV 499

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGI+H+G   A+ +A    +Y NFA+ +++   HN    L L     +G  I ++++
Sbjct: 500 IFALGIKHIGQRAAKLIAD---NYANFAELLDD---HN---LLKLQNTKNIGPKIIESLI 550

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           EF  +P N   + A L  +    G+  K +S+ +     V TG L + + H  +      
Sbjct: 551 EFISSPAN-QDLLAFLDAIFNYEGK-AKVISTILSGYTFVITGVLSEPRSHFVKLIEEHS 608

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G V SAI S KT  ++ G + GSKLEKA + G K++NEEQF  L++Q
Sbjct: 609 GNVSSAI-SSKTSYLLAGSDAGSKLEKAYKTGTKVINEEQFYDLIKQ 654


>gi|216263494|ref|ZP_03435489.1| DNA ligase, NAD-dependent [Borrelia afzelii ACA-1]
 gi|215980338|gb|EEC21159.1| DNA ligase, NAD-dependent [Borrelia afzelii ACA-1]
          Length = 660

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 212/707 (29%), Positives = 366/707 (51%), Gaps = 67/707 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   +  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   KIQQEIADLKKLIRKWNKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS+P LSL+K++N++ L+ +I +I         NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSVPVLSLDKVYNLDLLKLWIDKI------DFSNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  IR I  +P  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHVPLFLGEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLDF-KTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++K++ LGF VN  +R   Q ++   +++Y  ++   R++  Y+IDG+V KV +F+L
Sbjct: 228 NLAIEKLKKLGFKVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG     P+W +++KF      +++  I +Q+GR+G +TPVA ++ V + GA ITNA
Sbjct: 288 REKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFITNA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  +           ++ VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIASI-----------NLNVGDIVKVSRRGDVIP-AVEMVINKFSTGF--FKIP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DKCPSCKTVVVKE---------GAHFFCTNNNCPSVAVERIKYFCSKNCMDIEGFSDKTI 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T       +  K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FISSEIDLYTF------NFYKLLKFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +    +  +L+L+++  +G+ IA  
Sbjct: 495 KLLLSIGIKELGENTIRLL---FLNNLNSFSKLFRLCQDRDFAFLTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLV-----FTGTLQKIQRHK 665
           I++ + N   I        +V  ++G + E+ +  + ENK LV      TG+     R  
Sbjct: 552 IIDAFNNSIMINKF-----KVFENLGFKMEERILIDDENKLLVGKKFCITGSFNGYSRPI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
             + +   GA+    +++  D ++VG+  G+KL+KA  L VKIM+ E
Sbjct: 607 VIDKLENKGAIFKTCVTKGLDFLVVGEKAGTKLKKALNLNVKIMSFE 653


>gi|157164612|ref|YP_001467146.1| NAD-dependent DNA ligase LigA [Campylobacter concisus 13826]
 gi|190359238|sp|A7ZED8|DNLJ_CAMC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|112801346|gb|EAT98690.1| DNA ligase, NAD-dependent [Campylobacter concisus 13826]
          Length = 647

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 219/689 (31%), Positives = 355/689 (51%), Gaps = 75/689 (10%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHS 92
            YY   +P+  D EYDAL     A   A P    SE     P  ++GG +     K +H 
Sbjct: 19  AYYDEDEPLASDEEYDALYHAVLAFEQANP----SEISLFSPTKRVGGGVKEGFSKASH- 73

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
                ++++W++ED+  F       W K+ +  ++ F  EPK DG  + + YE G  V A
Sbjct: 74  -----IKRMWSMEDI--FSLGELDAWLKRGEKENLTFVAEPKFDGASLNLLYENGVLVRA 126

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211
             RGDG +GEDV+   R I ++P+  S++   +IE+RGEV I K+DF  LN E    G  
Sbjct: 127 ITRGDGVTGEDVTQNARTISSVPK--SISYKGLIEIRGEVVIRKDDFELLNMERAKEGEA 184

Query: 212 PYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
           P +NPRNAA+G LR+L+      R L F   G+G+ S +  K   E+++ +R LGF  ++
Sbjct: 185 PLSNPRNAAAGSLRQLDSAVTAKRKLLFIPWGVGEQS-LGLKDHSEVMKFVRDLGFERDD 243

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
             +       + + YNE+ + R +    +DG+V +V++ +  +QLG   + P++M++ KF
Sbjct: 244 FFKILKKDE-LEAAYNELLANRDSKSVMMDGMVIRVNDLARCEQLGYTVKFPKFMVAFKF 302

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
              +  TRL D+ +Q+GR+G++TPV  L+ VNI GA + +ATLHN D I+ L     VM+
Sbjct: 303 PAIEKVTRLKDVALQVGRSGVVTPVGVLDEVNIDGANVKSATLHNFDEIERLG----VMK 358

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
                   D + + R+G+VIPK+  +  + R    Q    P FCP+C S ++ +     G
Sbjct: 359 -------NDYIGIIRSGDVIPKITKVFKDRRDGSEQAIERPKFCPVCGSHLLDE-----G 406

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
             V   +C   L+C A+ +  + H+ S+   NI+GLG   ++  F   D    I    DI
Sbjct: 407 VFV---KCQ-NLSCRARVVGSIIHYASKKCLNIDGLGDAIVNLLF---DKGL-IACIKDI 458

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           + L+     S      + GF +  V NL ++I   +   L RFI  LG  H+G   A+ L
Sbjct: 459 YGLKFDDLMS------LEGFKEKKVNNLLNAIEASKGAELSRFITGLGCEHIGEVAAKKL 512

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWL-----SLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
           A  +                   DWL      L  +   G  +A ++++F +  R+   +
Sbjct: 513 ASSF-----------------GLDWLDASFEELTALEGFGVEMANSLIDFAEVNRD--EI 553

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
            AL + V PS+    +++S+ +  K +V TGTL +  R + +  +   GA VS  +S+KT
Sbjct: 554 LALSQIVQPSV-TQVQSISNALSGKTVVITGTLSR-PRDEIKAELESFGAKVSGSVSKKT 611

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           D ++ G+  GSKL+KA +LGV +++E ++
Sbjct: 612 DFVLAGEEAGSKLDKANELGVLVIDESEY 640


>gi|4235372|gb|AAD13189.1| NAD-dependent DNA ligase [Thermus aquaticus]
          Length = 527

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 187/553 (33%), Positives = 306/553 (55%), Gaps = 48/553 (8%)

Query: 71  PNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           P+ P  ++G     S F+ V H     SL+  ++++++R F  RI R   +K      +T
Sbjct: 6   PDSPTEQVGARPLESTFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK--GPFLYT 63

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  I TIPR L+  +P+ +EVRG
Sbjct: 64  VEHKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIRTIPRRLT-GVPDRLEVRG 122

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKT 246
           EVY+    FL LN E+   G + + NPRNAA+G LR+ +P    R      F+  GLG  
Sbjct: 123 EVYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATFYALGLG-L 181

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E   K Q+++L  ++  GFPV +G  +A    G+   Y      R  LP++ DG+V K+
Sbjct: 182 EETGLKSQHDLLLWLKERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEADGVVVKL 241

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +L ++LG  AR+PR+ +++KF  ++  TRLL +  Q+GRTG +TPV  LEPV I G+
Sbjct: 242 DDLALWRELGYTARAPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLEPVFIEGS 301

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++  TLHNE +I+ L           D+R+GD VLV +AG VIP+V+ ++   R  + +
Sbjct: 302 EVSRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKERRTGEEK 350

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  +P  CP C   ++     K GK+   HRC   L C A++ E ++H+ SR A +I+GL
Sbjct: 351 PILWPENCPECGHALL-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIQGL 401

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++   +       +R  AD++ L++       ++      G+ S  NL   I + +
Sbjct: 402 GEKLIEKLLEK----GLVRDVADLYRLRKEDLLDLERM------GEKSAENLLRQIEESK 451

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              LER +++LG+  VG  +AR+LA  +         ++ ++     D   L+ V  VG+
Sbjct: 452 GRGLERLLYALGLPGVGEVLARNLALRF-------GHMDRLLEAGLGD---LLEVEGVGE 501

Query: 607 IIAQAIVEFYQNP 619
           + A+AI+   ++P
Sbjct: 502 LTARAILNTLKDP 514


>gi|188587790|ref|YP_001919828.1| NAD-dependent DNA ligase LigA [Clostridium botulinum E3 str. Alaska
           E43]
 gi|254781291|sp|B2UZ23|DNLJ_CLOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188498071|gb|ACD51207.1| DNA ligase, NAD-dependent [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 667

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 218/712 (30%), Positives = 362/712 (50%), Gaps = 69/712 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED----PNGP 74
           KEL  +  + SY    YY    P + D +YD   ++ D +      L   E     P  P
Sbjct: 9   KELVEILNKYSYD---YYVLDNPSVSDKDYD---KKYDELK-----LLEKETGVVLPYSP 57

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF-----WQKKDDNSIFFT 129
             +IG  +     K TH     SL+K  ++++++ +  R  +F      Q +D   + + 
Sbjct: 58  TLRIGDIVLDGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNIKFVNDMRAQGEDLPDLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
              K DG  + + Y E+G    +A RG+G  GE+V+A ++ I +IP  L  N  ++ EV 
Sbjct: 118 ATKKFDGLTVNLTYNEEGMLEVSATRGNGEIGENVTAQVKTIKSIPLKLQEN-HDLFEVH 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GE  +++  F   N    +    P  N RN A+G LR LN  +  R  L+ F + +G   
Sbjct: 177 GEAIMTQEAFEKYN----SSADSPLKNLRNGAAGALRNLNVKETARRDLSAFFYDVGYKE 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EM+  ++  G PV++ ++   +   I +  + ++ IR  L YDIDGLV  +D
Sbjct: 233 GYQFKTYLEMMDFIKEKGLPVDDYLKVCVSIEDIKNEIDYIEKIRFDLNYDIDGLVIAID 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+L+D++  +GR+G + P A LEPV + G  
Sbjct: 293 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLVDVEWNVGRSGRIGPTAILEPVELAGVT 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D IK         R G  +R+G  V ++R+ +VIP+++  + N      + 
Sbjct: 353 VKRATLNNMDDIK---------RKG--VRIGADVFIRRSNDVIPEIMGTLENTLENSEEI 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           F  P+ CP C S VV         L  AH  C   L+C  Q ++ + H+ SRDA NI G 
Sbjct: 402 FP-PTECPACGSHVV---------LNGAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGF 451

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++  +  F+      +I+  +D++ L++        + N+  FGD    NL +++   +
Sbjct: 452 SEKTAEQLFEK----LNIKSISDLYKLKKED------LINLEKFGDKKAENLLNAVEGSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L  FI++LGI +VG + A+ +   + S          I    N  +  L+ V  VGD
Sbjct: 502 ECKLYSFIYALGIPNVGVKTAKDIVNKFKS----------IDGLKNATFEELVSVQDVGD 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+AQ I+EF++  + I  ++ LL      I    K V S  ++K +V TGTLQ   R + 
Sbjct: 552 IVAQDIIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVATGTLQNYSRTEI 611

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA VS  +S+KTD +I G++ GSKL KA++LGV++++EE+F  +L
Sbjct: 612 KTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVEVISEEEFEKML 663


>gi|322382981|ref|ZP_08056811.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153004|gb|EFX45464.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 673

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 215/712 (30%), Positives = 351/712 (49%), Gaps = 68/712 (9%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +EI+ H+  YY   +P I D EYDAL  R   +      +     PN P  ++GG++ 
Sbjct: 11  LIEEINKHNYHYYTLDEPTITDQEYDALYDRLLKLEKESGTVL----PNSPTLRVGGDIL 66

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDNSIF----FTLEPKIDG 136
                  H     SL+K  +IE L+ +  R+ +    +  K+ ++      F +E K DG
Sbjct: 67  KGFEPHRHRSRLWSLDKAQSIEVLKNWHNRVQKLVNDYNSKNPSTPLPEPSFAVELKFDG 126

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGEVYI 193
             I + Y++G  V A+ RG+G  GE + A ++ I ++P    L IP    +IEV+GE  +
Sbjct: 127 LTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVP----LEIPYKEGLIEVQGEGMM 182

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
                L++ D+      +P  N RNAA+G LR LNP     R L  F + +G +      
Sbjct: 183 ----LLSVLDQYNQTAAEPLKNARNAAAGALRNLNPKVTAERRLTAFFYNVGFSDRKQFM 238

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              EM+  ++   F VN  V+  NT   +     +++  R    + IDG V KV +   +
Sbjct: 239 NHQEMIAFLKENHFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDFLIDGAVIKVTDIRTR 298

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + PRW I++KF  ++ +T L  +  ++GRTG +TPVA++EPV + G  + N T
Sbjct: 299 EVLGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAKVEPVELAGVTVQNCT 358

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N          G + R      +G  V ++R+ +VIP+++  +  E   D +   +P 
Sbjct: 359 LNN---------IGDIERKNLKHALGSLVYIRRSNDVIPEILGKVTEE--IDGEEIKYPE 407

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C +    +L  +   L     C   L C  Q + R+ HF SRDA +IE       +
Sbjct: 408 HCPACGT----ELEQRGAHLF----CPNRLGCKPQLIGRITHFASRDAMDIETFSVMTAE 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++  D    +R PAD++ L      +   I  +  FG+    NL D+I K +   L  
Sbjct: 460 QLYQQLD----VRDPADLYDL------TYDDIIQLPRFGEKKANNLLDAIEKSKERDLSS 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+F+LGI + G    + LA+++ S       +             LI +P VG I+A +I
Sbjct: 510 FLFALGIPNTGKTTTKVLAEHFRSLDKVMDAVVE----------ELIALPDVGGIVADSI 559

Query: 613 VEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
             F+++P  I ++  + K     ++    G+ E +       K +V TGTL  + R +A 
Sbjct: 560 YTFFRDPIMIESIRRMKKAGVQAQMEAEEGKAEIDPGHPFYGKTIVLTGTLSSMSRDEAA 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLL 718
           + +  LGA V+  +S+KTDI+I G+N GSKL KA+QLG++++ NE++ L LL
Sbjct: 620 KKLESLGAKVTGSVSKKTDIVIAGENAGSKLAKAEQLGIRVIDNEDELLHLL 671


>gi|269794376|ref|YP_003313831.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542]
 gi|269096561|gb|ACZ20997.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542]
          Length = 871

 Score =  306 bits (785), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 204/651 (31%), Positives = 320/651 (49%), Gaps = 90/651 (13%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  AR   + L + I  H   YY    P + D+EYD L R    I  A P L     P+ 
Sbjct: 41  LSAARTRWAELAETIEAHQFAYYVRDAPTVSDAEYDTLLRELGDIEEAHPQL---RTPDS 97

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG  +     V H    LSL+  +N EDL  +  R++R   +   + + +  E K
Sbjct: 98  PTQRVGGTFSTDFAAVDHREQMLSLDNAFNAEDLDAWAERVHR---EIGTSQVHYLCEVK 154

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVRGE 190
           IDG  I + YEKG+ V AA RGDG +GEDV+  +  I  IP+ L  ++   P++IE+RGE
Sbjct: 155 IDGLAIALLYEKGRLVRAATRGDGRTGEDVTLNVLTIEGIPKALDASVREVPDLIEIRGE 214

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK---- 245
           V++  + F ALN+  +A G+ P+ANPRNAA+G LR+ NP     R L  + HG+G     
Sbjct: 215 VFMLVDQFAALNEAQVAAGKPPFANPRNAAAGSLRQKNPKITAGRPLRMYAHGVGALHWE 274

Query: 246 ---TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDI 299
               SE+  + Q +     R  G PV++  R      G+   + YY +    R  + +++
Sbjct: 275 AGTPSEL--RRQSDAYDYFRAWGVPVSDHNRVVEGMPGVQEMIDYYGDH---RHDIEHEL 329

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KVDE +LQ+QLG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   +E
Sbjct: 330 DGIVVKVDELALQRQLGATSRAPRWAIAYKYPPEEVNTTLLDILVNVGRTGRVTPFGMME 389

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+ ++ ATLHN           +V R G  + +GD V++++AG+VIP++V  +V+
Sbjct: 390 PVLVAGSTVSMATLHN---------GSEVRRKG--VLIGDTVVLRKAGDVIPEIVGPVVD 438

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            R    + F  P+ CP C +     L P K G +    RC    +C +Q  ER+ H   R
Sbjct: 439 LRDGSEREFVMPTECPSCGTT----LAPAKEGDVDI--RCPNQRSCPSQLRERVFHLAGR 492

Query: 479 DAFNIEGLGKQQLDFFFKSED--------PAFSIRIP----------------ADIFTLQ 514
            AF+IE +G +        E             +++P                AD+   +
Sbjct: 493 GAFDIEAMGWEAAIALVDPEHNRPESADAEGVPVQVPVLETEAGFFDFEVDALADVLVWR 552

Query: 515 RRQQT--STTKIENILGFG-----------DVSVTNLYDSINKRRNISLERFIFSLGIRH 561
            +++    T   E +  F              +    ++   K +   L R + +L IRH
Sbjct: 553 EKKKAGVGTGVWEQVPFFWTKATAKTPSKPSATTVKFFEEREKAKARPLWRVLVALSIRH 612

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           VG   AR+LA  + S       +  I+A   ++   L     VG  IA+A+
Sbjct: 613 VGPTAARALATAFES-------VEAIMAATEEE---LAATEGVGPTIARAV 653



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 51/81 (62%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           ++++   +E   +V TG+L+   R + +E +   G   +  +S+KTD ++VG+N GSK  
Sbjct: 759 DESIVRTLEGFTVVVTGSLEGFNRDQVKEAIIVRGGKAAGSVSKKTDFVVVGENAGSKEA 818

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           KA++LG+ I++E  F+ LL +
Sbjct: 819 KARELGLTILDEAGFVTLLAE 839


>gi|51598803|ref|YP_072991.1| NAD-dependent DNA ligase LigA [Borrelia garinii PBi]
 gi|81609923|sp|Q660X2|DNLJ_BORGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51573374|gb|AAU07399.1| DNA ligase [Borrelia garinii PBi]
          Length = 660

 Score =  306 bits (785), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 215/704 (30%), Positives = 361/704 (51%), Gaps = 61/704 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E+  L++ I   D  YY  S P + D  YD    R   +    P+    + P    
Sbjct: 4   KIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESRHPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++  +  +V HS+P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  IR I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +F  +N  +     KPY + RN ASGILRR++  ++  + LN F++     +E+  K  
Sbjct: 173 ENFFKINKFL----EKPYTSSRNLASGILRRVDSREVANFPLNIFIYDF-LNAELELKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              + K++ LGF V+  +R   Q ++   +++Y  ++   R++  Y+IDG+V KV EF L
Sbjct: 228 DLAIAKLKKLGFKVDPLIRFFDQKSSIIEVLNYIADITKKRNSFEYEIDGVVLKVSEFVL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  +  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA ITNA
Sbjct: 288 REKLGYTSHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITNA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  +            + VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIISI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKCSKGV--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ +V++          AH      +C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTVLVKE---------GAHFFCTNNSCPSVAVERIKYFCSKNCMDIEGFSDKTI 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ E     I    D++T       +  K+    GF D  V NL +SI   +     
Sbjct: 445 SFLFEKE----FISSEIDLYTF------NFYKLLKFKGFKDRKVYNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +    N  + +L+++  +G+ IA  
Sbjct: 495 KLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRNFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           I+E + +   +      E L  ++  SI   ++N    +  KK   TGT     R    +
Sbjct: 552 IIEAFNDSTMLNKFKFFENLGFKMEESILIDDEN--RLLAGKKFCITGTFNGYSRSIIID 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            +   GA+    ++   D +IVG+  GSKLEKA  L VKIM+ E
Sbjct: 610 KLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFE 653


>gi|313763487|gb|EFS34851.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA1]
 gi|313773641|gb|EFS39607.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL074PA1]
 gi|313801268|gb|EFS42519.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA2]
 gi|313808052|gb|EFS46533.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA2]
 gi|313811476|gb|EFS49190.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA1]
 gi|313813500|gb|EFS51214.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA1]
 gi|313816668|gb|EFS54382.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA1]
 gi|313819621|gb|EFS57335.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA2]
 gi|313826033|gb|EFS63747.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA1]
 gi|313829503|gb|EFS67217.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA2]
 gi|313831217|gb|EFS68931.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL007PA1]
 gi|313840009|gb|EFS77723.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL086PA1]
 gi|314914784|gb|EFS78615.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA4]
 gi|314920694|gb|EFS84525.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA3]
 gi|314930573|gb|EFS94404.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL067PA1]
 gi|314954471|gb|EFS98877.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA1]
 gi|314961961|gb|EFT06062.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA2]
 gi|314963768|gb|EFT07868.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA1]
 gi|314968405|gb|EFT12503.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA1]
 gi|314974093|gb|EFT18189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA1]
 gi|314976617|gb|EFT20712.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL045PA1]
 gi|314978931|gb|EFT23025.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA2]
 gi|314984280|gb|EFT28372.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA1]
 gi|314986627|gb|EFT30719.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA2]
 gi|314990983|gb|EFT35074.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA3]
 gi|315079616|gb|EFT51609.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA2]
 gi|315081153|gb|EFT53129.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL078PA1]
 gi|315087038|gb|EFT59014.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA3]
 gi|315089213|gb|EFT61189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA1]
 gi|315095437|gb|EFT67413.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL038PA1]
 gi|315099114|gb|EFT71090.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA2]
 gi|315100402|gb|EFT72378.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA1]
 gi|315109094|gb|EFT81070.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA2]
 gi|327328505|gb|EGE70267.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA2]
 gi|327329632|gb|EGE71388.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA3]
 gi|327334143|gb|EGE75857.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL097PA1]
 gi|327444292|gb|EGE90946.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA2]
 gi|327444828|gb|EGE91482.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA1]
 gi|327446317|gb|EGE92971.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA2]
 gi|327452096|gb|EGE98750.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL092PA1]
 gi|327454866|gb|EGF01521.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA3]
 gi|327457850|gb|EGF04505.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA2]
 gi|328752459|gb|EGF66075.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL020PA1]
 gi|328755302|gb|EGF68918.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA1]
 gi|328758217|gb|EGF71833.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA2]
 gi|328759940|gb|EGF73524.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL099PA1]
          Length = 740

 Score =  306 bits (785), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P 
Sbjct: 19  EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 75

Query: 76  NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            ++G    ++ F  V H    LSL+ ++  ++L +++ R+     K  +    F  E KI
Sbjct: 76  QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ + +P ++EVRGEV+ 
Sbjct: 132 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
              DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G        
Sbjct: 192 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 251

Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q     K+   G PV+     V   +  H  V+ + E    R    + IDG+V KVD+ 
Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 308

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ + 
Sbjct: 309 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 368

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F 
Sbjct: 369 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 417

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +
Sbjct: 418 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 472

Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520
                   E     D   +  +P          A +F LQ          RR++ +    
Sbjct: 473 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 532

Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
                    T            +   ++D + K ++  L R + +L IRHVG   AR+LA
Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ S +   +     +A           V  VG+IIA+++  +++   +   +      
Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG
Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +N GSK  KA+ LG  I++E  F +LL+
Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRYLLE 730


>gi|161621794|ref|YP_056321.2| NAD-dependent DNA ligase LigA [Propionibacterium acnes KPA171202]
 gi|315106904|gb|EFT78880.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA1]
          Length = 740

 Score =  306 bits (784), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P 
Sbjct: 19  EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 75

Query: 76  NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            ++G    ++ F  V H    LSL+ ++  ++L +++ R+     K  +    F  E KI
Sbjct: 76  QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ + +P ++EVRGEV+ 
Sbjct: 132 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
              DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G        
Sbjct: 192 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 251

Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q     K+   G PV+     V   +  H  V+ + E    R    + IDG+V KVD+ 
Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 308

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ + 
Sbjct: 309 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 368

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F 
Sbjct: 369 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 417

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +
Sbjct: 418 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 472

Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520
                   E     D   +  +P          A +F LQ          RR++ +    
Sbjct: 473 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEIKVWRRRKVNGGPG 532

Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
                    T            +   ++D + K ++  L R + +L IRHVG   AR+LA
Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ S +   +     +A           V  VG+IIA+++  +++   +   +      
Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG
Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +N GSK  KA+ LG  I++E  F +LL+
Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRYLLE 730


>gi|313793877|gb|EFS41901.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA1]
          Length = 740

 Score =  306 bits (784), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P 
Sbjct: 19  EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 75

Query: 76  NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            ++G    ++ F  V H    LSL+ ++  ++L +++ R+     K  +    F  E KI
Sbjct: 76  QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ + +P ++EVRGEV+ 
Sbjct: 132 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
              DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G        
Sbjct: 192 PVADFTDLNAALIEAGKNPFANPRNAAAGPLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 251

Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q     K+   G PV+     V   +  H  V+ + E    R    + IDG+V KVD+ 
Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 308

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ + 
Sbjct: 309 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 368

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F 
Sbjct: 369 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 417

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +
Sbjct: 418 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 472

Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520
                   E     D   +  +P          A +F LQ          RR++ +    
Sbjct: 473 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 532

Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
                    T            +   ++D + K ++  L R + +L IRHVG   AR+LA
Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ S +   +     +A           V  VG+IIA+++  +++   +   +      
Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG
Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +N GSK  KA+ LG  I++E  F +LL+
Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRYLLE 730


>gi|330837729|ref|YP_004412370.1| DNA ligase [Spirochaeta coccoides DSM 17374]
 gi|329749632|gb|AEC02988.1| DNA ligase [Spirochaeta coccoides DSM 17374]
          Length = 716

 Score =  306 bits (784), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 224/731 (30%), Positives = 350/731 (47%), Gaps = 75/731 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A + ++ L + +      YY   +P + D EYD L     A+  A PD+  ++ P   
Sbjct: 5   ETAVRRMAELSRILLDAQHEYYVLGRPSMSDKEYDTLMDELAALEAAHPDVKEADSPT-- 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G ++     +V HSIP LSL+K ++ E +  ++ +       K D  + F +E KI
Sbjct: 63  -QRVGSDLTSDFPEVRHSIPVLSLDKAYSAEAIVSWMNKA----GLKADTGLSFIVEEKI 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + + YEKG  V A  RG+G  G DV+A IR I  +P  L L+ P  I VRGEVY+ 
Sbjct: 118 DGVSMVLYYEKGILVRAVTRGNGTVGNDVTANIRTIAAVP--LRLSEPLDIAVRGEVYLP 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH-GLGKTSEIFAK 252
           K  F  LN  M      PYANPRN A+G +RR+  ++  R  L  FV+            
Sbjct: 176 KESFSVLNKTM----EIPYANPRNLAAGTIRRIKSSETARVPLTIFVYEAYFAGDATLYP 231

Query: 253 GQYEMLQKMRCLGFPVN-------------------NGVRQ-ANTFHGIVSYYNEMKSIR 292
              E+L  +  LGF VN                   +GV+  +  F  +  Y + +   R
Sbjct: 232 NHVELLAALVRLGFRVNPHLGVFASGRQEAEALLSASGVQGFSGAFDDLAGYISGVTRER 291

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
             LPY+IDGLV KV++ +L+   G     PRW I++KF    A T + DID+Q+GRTG +
Sbjct: 292 GNLPYEIDGLVVKVNDLALRDVFGYTGHHPRWAIAYKFESPAAQTVVQDIDVQVGRTGRI 351

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TP+AR+  V IGG++++N TLHN+DYI  L           ++ +GD V V + G+VIP 
Sbjct: 352 TPMARVRSVPIGGSVVSNVTLHNQDYIDLL-----------ELAIGDTVEVSKRGDVIP- 399

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLER 471
            V+ +V +       +  P+ CP C S +V         +  AH  C     C AQ   R
Sbjct: 400 AVERVVEKNEEGNTTWRIPAICPSCGSTLV---------IRGAHTFCPNASGCPAQVGGR 450

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           ++ FV +D  +I   G + +         A S  IP DI+TL  R+      ++   GFG
Sbjct: 451 IQFFVGKDGMDIANFGPETVTVLRNIN--ALS-DIP-DIYTLDYRR-----VLDGQPGFG 501

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
              ++ +   +   RN      + +LG+   G +    L     S ++  Q ++ +  H+
Sbjct: 502 KKKISLIVTGVEDSRNRPFRVVLSALGLPDFGRKAVDQLLDAG-SIRSMEQLLHIVDTHD 560

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IE 648
            D   +L  +P +G+ +A  ++E    P     + A L E   S       VS       
Sbjct: 561 MD---TLTSIPQIGEKMAMTLIESLSAPEMRARIHA-LGEAGLSFEEEASQVSDVPQIFA 616

Query: 649 NKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
            +    TG+ +    R KA   V + G  V++ ++ KT  ++ G   GSKL +AQ+ G +
Sbjct: 617 GQTWCVTGSFEHFSPREKAMVEVKKRGGRVTSSVTGKTTHLLAGGGAGSKLSQAQKAGAR 676

Query: 708 IMNEEQFLFLL 718
           I++E++FL +L
Sbjct: 677 IVSEDEFLGML 687


>gi|193216704|ref|YP_001999946.1| DNA ligase [Mycoplasma arthritidis 158L3-1]
 gi|254781372|sp|B3PMJ0|DNLJ_MYCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193002027|gb|ACF07242.1| DNA ligase [Mycoplasma arthritidis 158L3-1]
          Length = 665

 Score =  306 bits (784), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 229/710 (32%), Positives = 360/710 (50%), Gaps = 57/710 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYD----ALKRRCDAIAHAFPDLARSED 70
           E+ R E+  L+ +I+  D+ YY    P++ D+ YD     LK+  +  +  F   +  E 
Sbjct: 5   EKIRNEVFELQAKINEWDNAYYNLDAPLVEDAIYDREILKLKKLEEQYSSYF---SFEEL 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            N P  KI  + +    KVTH  P LSL K +  E+++KFI  I     KK   +  F L
Sbjct: 62  ANSPTQKINAKSSDLFKKVTHDSPMLSLNKAYTEEEIQKFIDNI-----KKVTPTFSFFL 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPKIDG  I+I+Y  G+   A  RGDG  GEDV+  I+ I  IP+ ++   P  +EVRGE
Sbjct: 117 EPKIDGLSISIKYRNGQLFQAVTRGDGLVGEDVTENIKQIKNIPKEIAYQKP--LEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           VY++ ++F  +N       +   ANPRNAA+G LR+L+   +  R L+ F++ +    + 
Sbjct: 175 VYLALSEFEKINLNFQKENKPLMANPRNAAAGTLRQLDKEIVANRNLSAFLYNIVAPEDH 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E    ++ LGF V      A     I SY    K ++ TL Y+ DG+V K++E 
Sbjct: 235 NIFTILEARDFLKNLGFSVTKEATYAKDLSEINSYIENFKHLKKTLDYETDGVVIKLNEL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
                LG   + P   I+ K+     +T L +I I +GRTG++T  A LEPV + G+ IT
Sbjct: 295 QHYDALGATNKFPHSAIAFKYEPNTTTTVLKNIFITVGRTGLVTYNAELEPVILSGSCIT 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATL+N  YIK L            +  GD V +K+AGE+IP V+  +VN++H + +   
Sbjct: 355 FATLNNYQYIKDL-----------KLNKGDLVYIKKAGEIIPCVIG-LVNKKHEETEFNK 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP C S ++     +T  L+  + C+    C   + +++ HF S+ A  +  LG++
Sbjct: 403 FLK-CPYCNSDLI-----ETDTLLEQY-CSNE-NCPEIRRKKIIHFASKKAMELNSLGEK 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F         +    D + L+ ++     KI ++  FG  SV N+  SI + +  S
Sbjct: 455 NIDVFINEG----LLENVIDFYKLKEKKD----KIMSLERFGTKSVMNILKSIEESKKNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L+R IF L I+H+G+++A  LA   L   NF           + D+ SLI    +G+ I 
Sbjct: 507 LDRVIFGLSIKHIGSKVAYFLASKILKLSNFL----------DFDFDSLISYNEIGEKII 556

Query: 610 QAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++  +     N   V+ LL  +V       +K  +        V TGTL + + H  ++
Sbjct: 557 SSLKNWVAKEENKNLVKDLLDNDVDLEFIATKK--TERFAQLSFVITGTLSQPRSH-FEK 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + + G  +S+ +S KT  ++VG++ GSKL KA+ L VKI++EE F  LL
Sbjct: 614 LIKENGGSISSAVSAKTSYLLVGEDAGSKLAKARALNVKILDEEAFNELL 663


>gi|289426325|ref|ZP_06428068.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
 gi|295131143|ref|YP_003581806.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
 gi|289153053|gb|EFD01771.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
 gi|291375741|gb|ADD99595.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
 gi|332676019|gb|AEE72835.1| DNA ligase [Propionibacterium acnes 266]
          Length = 753

 Score =  306 bits (784), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P 
Sbjct: 32  EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 88

Query: 76  NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            ++G    ++ F  V H    LSL+ ++  ++L +++ R+     K  +    F  E KI
Sbjct: 89  QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 144

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ + +P ++EVRGEV+ 
Sbjct: 145 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 204

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
              DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G        
Sbjct: 205 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 264

Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q     K+   G PV+     V   +  H  V+ + E    R    + IDG+V KVD+ 
Sbjct: 265 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 321

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ + 
Sbjct: 322 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 381

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F 
Sbjct: 382 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 430

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +
Sbjct: 431 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 485

Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520
                   E     D   +  +P          A +F LQ          RR++ +    
Sbjct: 486 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 545

Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
                    T            +   ++D + K ++  L R + +L IRHVG   AR+LA
Sbjct: 546 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 605

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ S +   +     +A           V  VG+IIA+++  +++   +   +      
Sbjct: 606 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 655

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG
Sbjct: 656 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 715

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +N GSK  KA+ LG  I++E  F +LL+
Sbjct: 716 ENAGSKETKARDLGRPILDEAGFRYLLE 743


>gi|313834239|gb|EFS71953.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL056PA1]
 gi|314924752|gb|EFS88583.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA3]
          Length = 740

 Score =  306 bits (784), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P 
Sbjct: 19  EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 75

Query: 76  NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            ++G    ++ F  V H    LSL+ ++  ++L +++ R+     K  +    F  E KI
Sbjct: 76  QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ + +P ++EVRGEV+ 
Sbjct: 132 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
              DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G        
Sbjct: 192 PVADFTDLNAALIEAGKTPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 251

Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q     K+   G PV+     V   +  H  V+ + E    R    + IDG+V KVD+ 
Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 308

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ + 
Sbjct: 309 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 368

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F 
Sbjct: 369 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 417

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +
Sbjct: 418 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 472

Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520
                   E     D   +  +P          A +F LQ          RR++ +    
Sbjct: 473 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 532

Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
                    T            +   ++D + K ++  L R + +L IRHVG   AR+LA
Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ S +   +     +A           V  VG+IIA+++  +++   +   +      
Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG
Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +N GSK  KA+ LG  I++E  F +LL+
Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRYLLE 730


>gi|81611354|sp|Q6A7A2|DNLJ_PROAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50840696|gb|AAT83363.1| DNA ligase [Propionibacterium acnes KPA171202]
          Length = 772

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P 
Sbjct: 51  EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 107

Query: 76  NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            ++G    ++ F  V H    LSL+ ++  ++L +++ R+     K  +    F  E KI
Sbjct: 108 QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 163

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ + +P ++EVRGEV+ 
Sbjct: 164 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 223

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
              DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G        
Sbjct: 224 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 283

Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q     K+   G PV+     V   +  H  V+ + E    R    + IDG+V KVD+ 
Sbjct: 284 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 340

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ + 
Sbjct: 341 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 400

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F 
Sbjct: 401 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 449

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +
Sbjct: 450 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 504

Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520
                   E     D   +  +P          A +F LQ          RR++ +    
Sbjct: 505 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEIKVWRRRKVNGGPG 564

Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
                    T            +   ++D + K ++  L R + +L IRHVG   AR+LA
Sbjct: 565 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 624

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ S +   +     +A           V  VG+IIA+++  +++   +   +      
Sbjct: 625 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 674

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG
Sbjct: 675 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 734

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +N GSK  KA+ LG  I++E  F +LL+
Sbjct: 735 ENAGSKETKARDLGRPILDEAGFRYLLE 762


>gi|251777669|ref|ZP_04820589.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243081984|gb|EES47874.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 667

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 218/712 (30%), Positives = 361/712 (50%), Gaps = 69/712 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED----PNGP 74
           KEL  +  + SY    YY    P + D +YD   ++ D +      L   E     P  P
Sbjct: 9   KELVEILNKYSYD---YYVLDNPSVSDKDYD---KKYDELK-----LLEKETGFVLPYSP 57

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF-----WQKKDDNSIFFT 129
             +IG  +     K TH     SL+K  ++++++ +  R  +F      Q +D   + + 
Sbjct: 58  TLRIGDIVLDGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNVKFVNEMRAQGEDLPDLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
              K DG  + + Y E+G    +A RG+G  GE+V+A ++ I +IP  L  N  ++ EV 
Sbjct: 118 ATKKFDGLTVNLTYNEEGMLEVSATRGNGEIGENVTAQVKTIKSIPLKLQEN-HDLFEVH 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GE  +++  F   N    +    P  N RN A+G LR LN  +  R  L+ F + +G   
Sbjct: 177 GEAIMTQEAFEKYN----SSADSPLKNLRNGAAGALRNLNVKETARRDLSAFFYDVGYKE 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EM+  ++  G PV++ ++   +   I +  + ++ IR  L YDIDGLV  +D
Sbjct: 233 GYQFKTYLEMMDFIKEKGLPVDDYLKVCVSIEDIKNEIDYIEKIRFDLNYDIDGLVIAID 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G + P A LEPV + G  
Sbjct: 293 DIKTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRIGPTAILEPVELAGVT 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D IK         R G  +R+G  V ++R+ +VIP+++  + N      + 
Sbjct: 353 VKRATLNNMDDIK---------RKG--VRIGADVFIRRSNDVIPEIMGTLENTLENSEEI 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           F  P  CP C S VV         L  AH  C   L+C  Q ++ + H+ SRDA NI G 
Sbjct: 402 FP-PIECPACGSHVV---------LNGAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGF 451

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++  +  F+      +I+  +D++ L++        + N+  FGD    NL +++   +
Sbjct: 452 SEKTAEQLFEK----LNIKSISDLYKLKKED------LINLEKFGDKKAENLLNAVEGSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L  FI++LGI +VG + A+ +   + S          I    N  +  L+ V  VGD
Sbjct: 502 ECKLYSFIYALGIPNVGVKTAKDIVNKFKS----------IDGLKNATFEELVSVQDVGD 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+A+ I+EF++  + I  ++ LL      I    K V S  ++K +V TGTLQ   R + 
Sbjct: 552 IVAKDIIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVATGTLQNYSRTEI 611

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA VS  +S+KTD +I G++ GSKL KA++LGV++++EE+F  +L
Sbjct: 612 KTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVEVISEEEFEKML 663


>gi|182419331|ref|ZP_02950583.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521]
 gi|237666454|ref|ZP_04526439.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376662|gb|EDT74234.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521]
 gi|237657653|gb|EEP55208.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 663

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 213/716 (29%), Positives = 362/716 (50%), Gaps = 71/716 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------P 71
           ++++  L ++++ +   YY    P + D EYD +          + +L + E+      P
Sbjct: 4   KEKIKELVEQLNNYSYKYYVLDDPSVTDKEYDKI----------YDELKKLEEETGFVLP 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDN--SI 126
             P  ++G  +     K TH     SL+K  +IE++  +  R  +F    + K +N   +
Sbjct: 54  YSPTLRVGDIVLDGFEKYTHKAKLWSLDKAQSIEEIIDWHNRNVKFVNDMRLKGENLPDL 113

Query: 127 FFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
            + L  K DG  I + Y E+G    AA RG G+ GE+V+A ++ I +IP  L +    I+
Sbjct: 114 KYVLTKKFDGLTINLTYNEEGVMEIAATRGTGNIGENVTAQVKTIKSIP--LKIENNHIL 171

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLG 244
           EV GE  +++  F   N+      + P  N RN A+G LR LN  +  R  L+ F + +G
Sbjct: 172 EVHGEAVMTQEAFDKYNES----AQVPLKNLRNGAAGALRNLNVKETARRNLSAFFYDIG 227

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  K   EML  ++  G P+++ ++   T   I    + + SIR  L YDIDGLV 
Sbjct: 228 YKEGSPFKTYLEMLNFIKEKGLPMDDYMKVCTTIDEIQEQIDYINSIRFDLNYDIDGLVV 287

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
            +D+   ++ +G   + P+W I++KF  ++A+T+LL ++  +GR+G L P A LEPV + 
Sbjct: 288 AIDDMRTRELMGYTVKFPKWAIAYKFEAQEATTKLLGVEWNVGRSGRLAPTAILEPVELA 347

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  ATL+N D          + R G  +++G  V V+R+ +VIP+++  IV E    
Sbjct: 348 GVTVKRATLNNMD---------DIARKG--VKIGADVFVRRSNDVIPEIMG-IVPETLDG 395

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+    P+ CP C S ++ D         A + C   L+C  Q ++ + H+  R+A NI 
Sbjct: 396 AEDIKPPTECPACGSHIILD--------GAHYFCENTLSCKPQMVKSIVHYACREAMNIA 447

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G  ++  +  F+      +I+  +D++ L+  +     K      FG     NL ++I  
Sbjct: 448 GFSERTAEQLFEK----LNIKSISDLYKLKEEELIDLEK------FGPKKAQNLLEAIEN 497

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +   L  FI++LGI +VG + A+ L   + S +             N  +  L+ VP V
Sbjct: 498 SKECELHAFIYALGIPNVGVKTAKDLVSRFKSIEGL----------KNATFEELVSVPDV 547

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           GDI+AQ ++ F++  + +  ++ LL   V+P     E    +    K +V TG+LQ   R
Sbjct: 548 GDIVAQDVMSFFKEEKVLETIDELLALGVNPKFEEFEV-TENPFMGKTVVATGSLQNYSR 606

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + +E +  LGA V+  +S+KTD +I G+  GSKL KAQ+LGVK+++EE+F  +L+
Sbjct: 607 SEIKEKLESLGAKVAGSVSKKTDYVIAGEAAGSKLTKAQELGVKVLSEEEFEEILR 662


>gi|314957538|gb|EFT01641.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA1]
          Length = 724

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P 
Sbjct: 3   EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 59

Query: 76  NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            ++G    ++ F  V H    LSL+ ++  ++L +++ R+     K  +    F  E KI
Sbjct: 60  QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ + +P ++EVRGEV+ 
Sbjct: 116 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
              DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G        
Sbjct: 176 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 235

Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q     K+   G PV+     V   +  H  V+ + E    R    + IDG+V KVD+ 
Sbjct: 236 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ + 
Sbjct: 293 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F 
Sbjct: 353 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +
Sbjct: 402 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 456

Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520
                   E     D   +  +P          A +F LQ          RR++ +    
Sbjct: 457 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 516

Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
                    T            +   ++D + K ++  L R + +L IRHVG   AR+LA
Sbjct: 517 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 576

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ S +   +     +A           V  VG+IIA+++  +++   +   +      
Sbjct: 577 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 626

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG
Sbjct: 627 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 686

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +N GSK  KA+ LG  I++E  F +LL+
Sbjct: 687 ENAGSKETKARDLGRPILDEAGFRYLLE 714


>gi|315083671|gb|EFT55647.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA2]
          Length = 740

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 224/747 (29%), Positives = 358/747 (47%), Gaps = 80/747 (10%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P  
Sbjct: 20  ARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQ 76

Query: 77  KIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           ++G    ++ F  V H    LSL+ ++  ++L +++ R+     K  +    F  E KID
Sbjct: 77  RVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKID 132

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ + +P ++EVRGEV+  
Sbjct: 133 GLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFFP 192

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
             DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G         
Sbjct: 193 VADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPS 252

Query: 254 QYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           Q     K+   G PV+     V   +  H  V+ + E    R    + IDG+V KVD+ S
Sbjct: 253 QGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDVS 309

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  
Sbjct: 310 LQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEM 369

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F  
Sbjct: 370 ATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLM 418

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C + +  + N          RC     C +Q  ER+    SR A +IE LG + 
Sbjct: 419 PDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWEA 473

Query: 491 LDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS----- 520
                  E     D   +  +P          A +F LQ          RR++ +     
Sbjct: 474 AIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGP 533

Query: 521 --------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
                   T            +   ++D + K ++  L R + +L IRHVG   AR+LA 
Sbjct: 534 WQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALAT 593

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
           ++ S +   +     +A           V  VG+IIA+++  +++   +   +       
Sbjct: 594 HFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAG 643

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                  ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+
Sbjct: 644 VRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGE 703

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           N GSK  KA+ LG  I++E  F +LL+
Sbjct: 704 NAGSKETKARDLGRPILDEAGFRYLLE 730


>gi|298486340|ref|ZP_07004403.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159347|gb|EFI00405.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 628

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 173/458 (37%), Positives = 261/458 (56%), Gaps = 40/458 (8%)

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFF 239
           P+++EVRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F 
Sbjct: 14  PDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFC 72

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +GLG+TS   A     +L+ ++  G PV+  ++ AN     + YY ++   R TL Y+I
Sbjct: 73  CYGLGQTSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEI 132

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V+KV+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+
Sbjct: 133 DGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLK 192

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++  
Sbjct: 193 PVKVAGVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAE 241

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLK 473
            R  +A+    P  CP+C S V R   +    GK      A +RC G LAC AQ  + + 
Sbjct: 242 RRPENARAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAII 301

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
           H+VSR A +IEGLG + ++     +     I  PAD++ L+  Q      I ++ GF ++
Sbjct: 302 HYVSRRAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEI 351

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           S   L  +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +   
Sbjct: 352 SSNKLLKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY--- 408

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
                  +P VG  +A  I  F+++  N   ++ALL E
Sbjct: 409 -------LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 439



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 16/183 (8%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  + + +          A  + DWL + +   + +
Sbjct: 457 STTLEGLIDKLHIPSVGPGAAQKLADRFGTLE----------AIISADWLDMRQT--LPE 504

Query: 607 IIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQ 662
             A+++ +F+    +     A+EA LK+        +K V    +  +  V TG+L+++ 
Sbjct: 505 KQAKSVRDFFDESAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLERMS 564

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L +  
Sbjct: 565 RDVAKEKLETLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLTELG 624

Query: 723 TTL 725
             +
Sbjct: 625 VAV 627


>gi|302392792|ref|YP_003828612.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501]
 gi|302204869|gb|ADL13547.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501]
          Length = 671

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 225/714 (31%), Positives = 359/714 (50%), Gaps = 87/714 (12%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++EQ  K+L +   + +YH   YY    P++ D EYD L  R          L   E+  
Sbjct: 6   TLEQEMKKLINKLNKYNYH---YYVLDDPLVSDKEYDQLYDR----------LVELEEET 52

Query: 73  G------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKD 122
           G      P  ++G E         H  P  SL+K     +LR +  RI R    + ++  
Sbjct: 53  GKVLSGSPTQRVGAEPLDEFDSHQHLAPLWSLDKAQTGGELRDWDERIRRLIADYNREHP 112

Query: 123 DNSI---FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
           +N +    +T+E K DG  I + YE+G+ V AA RG G  GE +   ++ I TIP    L
Sbjct: 113 ENPLPEPLYTVEYKFDGLTINLTYEEGELVQAATRGTGEVGEAILEQVKTIKTIP----L 168

Query: 180 NIP---EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRY 235
            IP     +EV+GE  +     L++ +E       P  N RNAA+G LR L+P     R 
Sbjct: 169 QIPFKSGKLEVQGEGIMR----LSVLEEYNQQAETPLKNARNAAAGALRNLDPKVTAERN 224

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST- 294
           L+ F + +G    I      E+L  +R   F VN+ ++   TF  I     EM++I    
Sbjct: 225 LDAFFYSIGYYEGIEFDTHLEILDFLRENRFMVNDYLK---TFDEIEDVIEEMETIEEKV 281

Query: 295 --LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
             L Y +DG+V KV++   Q+ LG  AR+PRW I++KFA K+ +T LLD+  Q+GRTG L
Sbjct: 282 DDLDYLVDGMVIKVNDLRTQEVLGYTARAPRWAIAYKFAAKEVTTTLLDVKWQVGRTGKL 341

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPVA LEPV+I GA ++ ATL+N D I+            +D+  G RV ++R+ +VIP+
Sbjct: 342 TPVALLEPVDIEGATVSKATLNNWDDIQ-----------RKDVAKGCRVWLRRSNDVIPE 390

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLER 471
           ++  +  E   + +  + P  CP C S +V+D           H  C   L C  Q + R
Sbjct: 391 IIGRVETEEIEEVEEIAKPEECPDCGSSLVQD---------GVHLFCPNSLFCKPQLVAR 441

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           + HF SRDA  IE   ++  +  ++       +R  AD++ ++  +           GFG
Sbjct: 442 VAHFASRDALEIETFSEKTAEKLYEE----LGLRDIADLYDIEYEELLELE------GFG 491

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           +    NL D++ + +++ L  FI+ LG+ +VG   A  LA  + S +   +         
Sbjct: 492 EQKAENLIDALEESKDVELSSFIYGLGVPNVGTRTAELLADKFKSLERLMEA-------- 543

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSI-GRHEKNVSSEIEN 649
             D   L+ +  +G+++A+ IV+F+ +     +++ +L+  V P+     E    S   +
Sbjct: 544 --DKEELVEINGIGEVVAEEIVDFFADENIQGSIQRMLEAGVEPNYEAIEEVQEDSPFVD 601

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           + +V TG+L  + R +A+E +  LG  V++ +S  TDI+IVG+NPGSKL+KA+Q
Sbjct: 602 QTIVMTGSLPGLTRSEAKEKIKALGGKVTSSVSGNTDILIVGENPGSKLDKARQ 655


>gi|289428790|ref|ZP_06430473.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
 gi|289158188|gb|EFD06408.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
          Length = 753

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 224/748 (29%), Positives = 358/748 (47%), Gaps = 80/748 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P 
Sbjct: 32  EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 88

Query: 76  NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            ++G    ++ F  V H    LSL+ ++  ++L +++ R+     K  +    F  E KI
Sbjct: 89  QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 144

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ + +P ++EVRGEV+ 
Sbjct: 145 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 204

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
              DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G        
Sbjct: 205 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 264

Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q     K+   G PV+     V   +  H  V+ + E    R    + IDG+V KVD+ 
Sbjct: 265 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 321

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ + 
Sbjct: 322 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 381

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F 
Sbjct: 382 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 430

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   +  + N          RC     C +Q  ER+    SR A +IE LG +
Sbjct: 431 MPDHCPSCGVELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 485

Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520
                   E     D   +  +P          A +F LQ          RR++ +    
Sbjct: 486 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 545

Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
                    T            +   ++D + K ++  L R + +L IRHVG   AR+LA
Sbjct: 546 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 605

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ S +   +     +A           V  VG+IIA+++  +++   +   +      
Sbjct: 606 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 655

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG
Sbjct: 656 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 715

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +N GSK  KA+ LG  I++E  F +LL+
Sbjct: 716 ENAGSKETKARDLGRPILDEAGFRYLLE 743


>gi|150015242|ref|YP_001307496.1| NAD-dependent DNA ligase LigA [Clostridium beijerinckii NCIMB 8052]
 gi|190359245|sp|A6LQB0|DNLJ_CLOB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149901707|gb|ABR32540.1| DNA ligase, NAD-dependent [Clostridium beijerinckii NCIMB 8052]
          Length = 663

 Score =  304 bits (779), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 210/700 (30%), Positives = 360/700 (51%), Gaps = 71/700 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGPLNKIGGEMNLSLFKVTH 91
           YY    P + D +YD          +   +L R  +   P  P  ++G  +     K TH
Sbjct: 21  YYSLDSPSVSDKDYDEK-------YYELQELERETEYVLPYSPTLRVGDVVLEGFRKYTH 73

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQK---KDDN--SIFFTLEPKIDGTMITIRYE-K 145
                SL+K  +++++  +  R  +F ++   + +N   + + +  K DG  I + Y  +
Sbjct: 74  KARLWSLDKAQSLQEIIDWHNRNVKFVEEARGRGENLPDLKYVVTKKFDGLTINLTYNTE 133

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G    AA RG G  GE+V+A ++ I +IP  L +N  +I+EV GE  +++  F   N+  
Sbjct: 134 GILEIAATRGTGSIGEEVTAQVKTIKSIP--LKINSNDILEVHGEAIMTQEAFNKYNE-- 189

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
                 P  N RN A+G LR LN  +  R  L+ F + +G       K   EM++ ++  
Sbjct: 190 --TSDTPLKNLRNGAAGALRNLNVKETARRNLSAFFYDVGYKEGTPFKTYMEMMEFIKQQ 247

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G PV++ +R   +   I    + ++ IR  L YDIDGLV  +D+   ++ +G   + P+W
Sbjct: 248 GLPVDDYIRVCTSIEEIEKEIDYVRDIRFDLNYDIDGLVIAIDDIRTRELIGYTVKFPKW 307

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I+ KF  ++A+T+LLD++  +GR+G + P A LEPV + G  +  ATL+N D       
Sbjct: 308 AIAFKFEAQEATTKLLDVEWNVGRSGRVGPTAILEPVELAGVTVKRATLNNMD------- 360

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
              + R G  +R+G  V V+R+ +VIP+++  IV E    ++  S P  CP C S +V  
Sbjct: 361 --DIARKG--VRIGAEVFVRRSNDVIPEIMG-IVPESLEGSEEISVPEVCPACGSHLV-- 413

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
           LN       A + C   L+C  Q ++ + H+ SR+A NI G  ++  +  F+      +I
Sbjct: 414 LNG------AHYFCENTLSCKPQLVKTIVHYASREAMNIAGFSERTAEQLFEK----LNI 463

Query: 505 RIPADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
           +  +D++ L+          E+++G   F      NL ++I K ++  L  FI++LGI +
Sbjct: 464 KSISDLYKLKE---------EDLIGLEKFAAKKAQNLLEAIEKSKDCELYAFIYALGIPN 514

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG + A+ L   + S +             N  +  L+ V  VGDI+AQ ++ F++  + 
Sbjct: 515 VGVKTAKDLVSRFESIEGL----------KNATFEELVGVQDVGDIVAQGVLAFFKEEKV 564

Query: 622 ICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           +  +E LL   VSP     E  ++S  E K +V TG+L+   R + ++ +  LGA V+  
Sbjct: 565 LQTIEELLSLGVSPKYEEKEV-IASAFEGKTVVATGSLKNYSRTEIKDKLESLGAKVAGS 623

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +S+KTD +I G+  GSKL KA++LG+KI++E++F  +L++
Sbjct: 624 VSKKTDYVIAGEAAGSKLTKAEELGIKILSEDEFEEMLRR 663


>gi|308375959|ref|ZP_07668156.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007]
 gi|308344705|gb|EFP33556.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007]
          Length = 614

 Score =  303 bits (777), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 189/580 (32%), Positives = 299/580 (51%), Gaps = 39/580 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L     P+ P   +
Sbjct: 15  RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 71

Query: 79  GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG    + F+ V H    LSL+  +  ++L  +  RI+     +  ++  +  E KIDG 
Sbjct: 72  GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +PE++EVRGEV+ 
Sbjct: 128 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 187

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG        
Sbjct: 188 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 247

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             ++    +R  G PV+     A    G+   + Y+ E    R  + ++IDG+V KVDE 
Sbjct: 248 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ + 
Sbjct: 305 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVG 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   IK         R G  + +GD V++++AG+VIP+V+  +V  R    + F 
Sbjct: 365 QATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFI 413

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +  +   K G   A  RC     C  Q  ER+ H  SR+  +IE LG +
Sbjct: 414 MPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYE 468

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                 +++     I    ++F L  R    T       G    +   L  +++K +   
Sbjct: 469 AGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAP 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
           L R + +L IRHVG   AR+LA  + S    A    + +A
Sbjct: 525 LWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQLA 564


>gi|313822055|gb|EFS59769.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA1]
 gi|313823710|gb|EFS61424.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA2]
          Length = 740

 Score =  303 bits (777), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 223/748 (29%), Positives = 358/748 (47%), Gaps = 80/748 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P 
Sbjct: 19  EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 75

Query: 76  NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            ++G    ++ F  V H    LSL+ ++  ++L +++ R+     K  +    F  E KI
Sbjct: 76  QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ + +P ++EVRGEV+ 
Sbjct: 132 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
              DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G        
Sbjct: 192 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 251

Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q     K+   G PV+     V   +  H  V+ + E    R    + IDG+V KVD+ 
Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 308

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ + 
Sbjct: 309 FLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 368

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F 
Sbjct: 369 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 417

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +
Sbjct: 418 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 472

Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520
                   E     D   +  +P          A +F LQ          RR++ +    
Sbjct: 473 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 532

Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
                    T            +   ++D + K ++  L R + +L IRHVG   AR+LA
Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ S +   +     +A           V  VG+IIA+++  +++   +   +      
Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG
Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +N GSK  KA+ LG  I++E  F +LL+
Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRYLLE 730


>gi|262199205|ref|YP_003270414.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365]
 gi|262082552|gb|ACY18521.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365]
          Length = 751

 Score =  303 bits (776), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 187/567 (32%), Positives = 298/567 (52%), Gaps = 40/567 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S + AR E   L  E+S HD  YY  ++PII D EYD L ++  AI    P       P
Sbjct: 1   MSDDTARAEYLGLVDELSDHDRRYYVEAEPIISDVEYDKLLKKLRAIEEEHPAWVVEWSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFT 129
                ++G     S  KV   +P LSL+  ++  +L  F  R+ R      D   ++ + 
Sbjct: 61  T---QRVGHSPISSFPKVVREVPMLSLDNTYDESELADFHQRVLRGLGLSGDEAGAVNYV 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +EPKIDG  + + YE+G F     RGDG  GED+S  +R +  +P  L   +  I  VRG
Sbjct: 118 VEPKIDGIGVELSYERGAFRLGTTRGDGRVGEDISQNLRTLRGLPLRLREEVDLI--VRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E ++++ DF ALN+     G +P+ NPRN  +G L++L+P  +  R +   ++ +    E
Sbjct: 176 EAFMTRADFTALNEARAEAGEEPFKNPRNTVAGSLKQLDPRLVAERPMQVILYEV-VGGE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            FA+  +E+L ++R LG P +    +A+++  +          R+ LP+D+DGLV KV+ 
Sbjct: 235 RFAREHFEVLARLRELGLPTSEHNSRADSWAALKREVAAWAERRAELPFDVDGLVIKVNS 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  +  LG  ++ PRW I++KF  +Q +T + D+++ +GRTG +TPVA L PV + G  +
Sbjct: 295 FDQRDALGTTSKFPRWAIAYKFPAQQVTTVIEDLEVNVGRTGAVTPVAMLTPVEVSGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN D I+ L    K           DRVL+++AGE+IP+V+ ++  ER  + Q F
Sbjct: 355 QRASLHNWDQIERLGIGPK-----------DRVLLEKAGEIIPQVIAVV--ERASE-QVF 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             PS CP C   ++++     G++  A  C   LAC  Q L  L+ F  R   NI+GLG+
Sbjct: 401 PRPSTCPSCGHGLIQE----PGRV--ALLCPNRLACPRQLLASLEFFAGRGQMNIDGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN- 547
           +         D      + AD+F L +    +  +      FG+ S  NL D+I + R+ 
Sbjct: 455 KVAQALL---DTGLVSNV-ADLFALSKEDLLTLER------FGEQSAQNLVDAIARARDS 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYY 574
            +  R + +LG+ H+G   AR++A +Y
Sbjct: 505 ATFSRLLAALGVAHIGGVAARAIAAHY 531


>gi|253680829|ref|ZP_04861632.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873]
 gi|253562678|gb|EES92124.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873]
          Length = 664

 Score =  303 bits (776), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 215/717 (29%), Positives = 368/717 (51%), Gaps = 74/717 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  ++++  L  E++     YY    P + D +YD            + +L + E   G
Sbjct: 1   MEVKKQKIYKLVDELNKLAYEYYVLDNPSVADKDYD----------KKYDELVQLEKETG 50

Query: 74  ------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLR----KFITRIYRFWQKKDD 123
                 P  ++G  +     K TH     SL K  ++E+++    K I  I  +    +D
Sbjct: 51  MLLSYSPTQRVGDVVLGKFEKYTHKGKLWSLGKAQSLEEVKDWHNKNIKAINEYNLNHED 110

Query: 124 N--SIFFTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
               I + +  K DG  I   Y   G  V AA RG G  GED++   + I T+P  L +N
Sbjct: 111 KLPPIKYIITKKFDGLTINCTYNNDGILVAAATRGTGEIGEDITLQAKTIKTLP--LKIN 168

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFF 239
              +IEV GE  ++K  F   N     V   P  N RN A+G LR LN  +  R  L+ F
Sbjct: 169 NNALIEVHGEAIMTKEAFQEYN----KVADVPLKNLRNGAAGALRNLNVRETARRNLSAF 224

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            + +G       K   EML+ ++  G P+++ V+  +T   I      ++ IR  L YDI
Sbjct: 225 FYDVGYNEGTPFKTYSEMLKFIKEQGIPMDDYVKPCSTVEEIEKEIKYIEKIRDNLNYDI 284

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V  +D+   ++ +G   + P+W +++KF  ++A+T+L+D++  +GR+G +TP A LE
Sbjct: 285 DGIVIAIDDMKTREVIGYTVKFPKWALAYKFEAQEATTKLIDVEWNVGRSGRVTPTAILE 344

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV IGG  +  ATL+N D I          R G  +++G  V ++R+ +VIP+++ ++ N
Sbjct: 345 PVEIGGVTVKRATLNNMDDIS---------RKG--VKLGSVVFLRRSNDVIPEIMGVVEN 393

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
               + +    P  CP C S VV++           + C   L+C  Q ++ + HF SR+
Sbjct: 394 SLE-NTREIKAPEICPYCGSEVVQE--------GVHYFCENTLSCKPQLVKSIVHFGSRE 444

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI G  ++  +  F+  D    I+   D++ +++ +      + N+  FG+    NL 
Sbjct: 445 AMNIAGFSEKTAEQLFEELD----IKSIPDLYRIKKEE------LLNLQRFGEKKAQNLI 494

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           D+I K +N  L  FI++LGI +VG + +  L + + +     Q++ +   H+      LI
Sbjct: 495 DAIEKSKNCDLPSFIYALGIPNVGKKTSIDLCRKFKTL----QKLKSATFHD------LI 544

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIEN-KKLVFTGT 657
            +  +G+I+A++I+EF+++   +  ++ LL+  V+P     E+N+   I N K +V TG+
Sbjct: 545 AIEDIGEIVAESIIEFFKDDTILKNIDELLELGVNPKF--QEENIQENIFNGKTVVVTGS 602

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           L    R + +E +  LGA V++ +S+KTD +IVG +PGSK +KA +L VKI++EE+F
Sbjct: 603 LNSFSRSEIKEKLQSLGAKVASSVSKKTDYVIVGKDPGSKYKKAVELNVKIIDEEKF 659


>gi|225552370|ref|ZP_03773310.1| DNA ligase, NAD-dependent [Borrelia sp. SV1]
 gi|225371368|gb|EEH00798.1| DNA ligase, NAD-dependent [Borrelia sp. SV1]
          Length = 660

 Score =  303 bits (776), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 210/707 (29%), Positives = 357/707 (50%), Gaps = 67/707 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   + + +P+    + P    
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELENKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F    
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRIDSREVANFPLNIFIYDFLNAGLEFKTND 228

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R   Q N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDQKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  +            + VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIASI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C+  VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKMAVVKE---------GAHFFCPNNKCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T          K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKQKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +    +  + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRDFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+E + +       +    +E  ++EV    G ++      +  KK   TGT     R  
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVEIDGENK-----FLAGKKFCITGTFNGYSRSI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
             + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E
Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFE 653


>gi|309805867|ref|ZP_07699902.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b]
 gi|308167776|gb|EFO69920.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b]
          Length = 567

 Score =  303 bits (776), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 198/601 (32%), Positives = 323/601 (53%), Gaps = 62/601 (10%)

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEV
Sbjct: 8   YNVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEV 65

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245
           RGE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+  ++T  R L+ F++    
Sbjct: 66  RGECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVN 124

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             E     Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V K
Sbjct: 125 PPETIT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLK 183

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G
Sbjct: 184 VDDLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAG 243

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++ A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   +
Sbjct: 244 TVVSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQAS 292

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+  P  CP C   +V        K   A RC   + C AQ  E + HF SR A NI G
Sbjct: 293 LPYEIPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVG 345

Query: 486 LGKQ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           LG +   QL       D        AD++ L      S  ++  +  F D S+ NL ++I
Sbjct: 346 LGPKIVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAI 392

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +  S+E  +F LGI HVGA+ AR +A+ +        ++N I   +  D   L+++ 
Sbjct: 393 ENSKQNSVELLLFGLGIDHVGAKAARLIAQKF-------HDLNTIRECSIAD---LMQID 442

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVF 654
            +G  IA+++V++++      +V+AL+ ++  +      +G  +     +   + K +V 
Sbjct: 443 TIGQAIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKEKNVVL 498

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG L    R    + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ 
Sbjct: 499 TGKLAHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEV 558

Query: 715 L 715
           +
Sbjct: 559 I 559


>gi|28211984|ref|NP_782928.1| NAD-dependent DNA ligase LigA [Clostridium tetani E88]
 gi|75541732|sp|Q891I0|DNLJ_CLOTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28204427|gb|AAO36865.1| NAD-dependent DNA ligase [Clostridium tetani E88]
          Length = 668

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 207/716 (28%), Positives = 363/716 (50%), Gaps = 73/716 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG- 73
           E+ ++ +  L +E++ +   YY    P + D EYD  KR        + +L   E   G 
Sbjct: 5   EEKKRRIHELIEELNKYAYEYYVLDNPTVSDKEYD--KR--------YDELVNLEKETGF 54

Query: 74  -----PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR---IYRFWQKKDDNS 125
                P  ++G  +     K TH     SL+K  NIE L+++I R   I   + + ++ +
Sbjct: 55  VLSYSPTQRVGDTVLTQFDKYTHKSRLWSLDKAQNIEQLKEWINRNEKIIMEYNRLNEET 114

Query: 126 I---FFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
           +    + L  K DG  +   Y E G  V  A RG G  GED+++ ++ I  +P  ++ N 
Sbjct: 115 LPMPTYILTKKFDGLTVNCTYDESGILVKGATRGTGIIGEDITSQVKTIKCLPLRIANN- 173

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240
             +IEVRGE  ++K  F   N++       P  N RN A+G LR L+  +   R L+ F 
Sbjct: 174 -NLIEVRGEAIMTKEAFDKYNEK----AEIPLKNLRNGAAGALRNLDVRETAKRNLSAFF 228

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           + +G +     K   EM+  +  +GFPV+  +++      I      ++ IR+ L YDID
Sbjct: 229 YDIGYSEGNEFKTYMEMIGFLISMGFPVDPYIKECKDIVEIKDEIKYIEDIRNELNYDID 288

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V  ++    ++ LG   + PRW I++KF  ++A+T+L+D++  +GR+G +TP A LE 
Sbjct: 289 GIVIAINHIKTREVLGYTVKFPRWAIAYKFEAEEATTKLIDVEWNVGRSGRVTPTALLES 348

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GGA I  ATL+N D          ++R  + +R+G  V ++R+ +VIP+++  +V  
Sbjct: 349 VELGGATIKRATLNNMD---------DIIR--KKVRLGAEVFIRRSNDVIPEIMG-VVES 396

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRD 479
              + +    P  CP C+S+++ +           H  C   L+C  Q ++ L HF SR+
Sbjct: 397 SLENTEEIKAPLKCPYCESKLINE---------GVHLFCENTLSCKPQLVKSLVHFASRE 447

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NIEG  ++  + F++      +I+   D++ +++    +  K      F +    N+ 
Sbjct: 448 AMNIEGFSEKTAEQFYEE----LNIKSIGDLYRVKKEDLLTLDK------FKEKKADNIM 497

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           ++I   +   L  FI++L I +VG + AR L K + +  N            N     L 
Sbjct: 498 NAIENSKKPKLSSFIYALSIPNVGVKTARDLVKSFKTLDNIK----------NATIEELT 547

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTL 658
            V  +G+I+A +++EF++      +++ LL+  V+P +   E    ++   K +V TGTL
Sbjct: 548 SVKDIGEIVANSVIEFFKQENINESIKELLELGVTPIMDITEIKKDNKFNGKTIVVTGTL 607

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           +   R++ +E +  LGA VS  +S+KTD ++ G+  GSK  KA +LG++I+ EE+F
Sbjct: 608 EGYTRNEIKEKLEALGAKVSGSVSKKTDFVLAGEEAGSKYNKAMELGIRIITEEEF 663


>gi|254229732|ref|ZP_04923141.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25]
 gi|151937777|gb|EDN56626.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25]
          Length = 407

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/439 (38%), Positives = 259/439 (58%), Gaps = 41/439 (9%)

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           +YY ++   R  LPY+IDG+V K+D+ ++Q++LG  AR+PRW I++KF  ++  T L ++
Sbjct: 6   AYYQDILQRRDALPYEIDGVVIKIDDIAVQERLGFVARAPRWAIAYKFPAQEEMTTLNEV 65

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
           + Q+GRTG +TPVA+LEPV +GG  ++NATLHN D I+ L            +++GD V+
Sbjct: 66  EFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERL-----------QVKIGDHVV 114

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           ++RAG+VIP+VV +I   R   A+   FP+ CP+C S V R          A  RCTGGL
Sbjct: 115 IRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIEGE------AVTRCTGGL 168

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522
            C AQ+ + LKHFVSR A +++GLG + ++     E     ++ PAD+F L       + 
Sbjct: 169 VCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDRE----MVKTPADLFKL-------SA 217

Query: 523 KIENILG-FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            I  +L   G  S  N+ +++ K +  +L RF++SLGIR VG   A +LA ++ + +   
Sbjct: 218 GILTVLDRMGPKSAQNIVNALEKSKETTLPRFLYSLGIREVGEATAANLAMHFKTLE--- 274

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRH 639
                  A  N +   LI V  +G ++AQ I  F+   +N   V+ LL++    P I   
Sbjct: 275 -------AIQNANEEQLIEVQDIGAVVAQHITTFFSEEQNQAVVKDLLEQGIHWPEINTT 327

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           E+     +E K +V TGTL ++ R +A+E +  LGA V+  +S+KTDI+  G+N GSKL 
Sbjct: 328 EQVGELPLEGKTVVLTGTLSQLGRTEAKEALQSLGAKVTGSVSKKTDILFAGENAGSKLA 387

Query: 700 KAQQLGVKIMNEEQFLFLL 718
           KAQ+LG++I  E+  L L+
Sbjct: 388 KAQELGIEIKTEQDLLELM 406


>gi|219685109|ref|ZP_03539929.1| DNA ligase, NAD-dependent [Borrelia garinii Far04]
 gi|219673205|gb|EED30224.1| DNA ligase, NAD-dependent [Borrelia garinii Far04]
          Length = 660

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 211/704 (29%), Positives = 362/704 (51%), Gaps = 61/704 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E+ +L++ I   D  YY  S P + D  YD    R   +    P+    + P    
Sbjct: 4   KIQQEIENLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESKHPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++  +  +V HS+P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  IR I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +F  +N  +     KPY + RN ASG+LRR++  ++  + LN F++     +E+  K  
Sbjct: 173 ENFFKINKFL----EKPYTSSRNLASGMLRRVDSREVANFPLNIFIYDF-LNAELDFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              + K++ LGF ++  +R   Q ++   +++Y  ++   R++  Y+IDG+V KV +F L
Sbjct: 228 DLAIAKLKKLGFKIDPLIRFFDQKSSIKEVLNYIADITKQRNSFEYEIDGVVLKVSDFVL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG     P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA ITNA
Sbjct: 288 REKLGYTLHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITNA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  +            + VGD V V R G+VIP  V++++N+       F FP
Sbjct: 348 TLHNQDYIISI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKCSKGV--FKFP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ +V++          AH      +C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTVLVKE---------GAHFFCTNNSCPSVTVERIKYFCSKNCMDIEGFSDKTI 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T       +  K+    GF D  V NL +SI   +     
Sbjct: 445 SFLFEKK----FISSEIDLYTF------NFYKLLKFKGFKDRKVYNLINSIEASKRKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +    +  + +L+++  +G+ IA  
Sbjct: 495 KLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRDFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           I+E + +   +      E L  ++  SI   + N    +  KK   TGT +   R    +
Sbjct: 552 IIEAFNDSTMLNKFKFFENLGFKMEESILIDDDN--RLLAGKKFCITGTFKDYSRPIIID 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            +   GA+    ++   D +IVG+  GSKLEKA  L VKIM+ E
Sbjct: 610 KLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFE 653


>gi|154174322|ref|YP_001408016.1| NAD-dependent DNA ligase LigA [Campylobacter curvus 525.92]
 gi|190359239|sp|A7GXS4|DNLJ_CAMC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|112803310|gb|EAU00654.1| DNA ligase, NAD-dependent [Campylobacter curvus 525.92]
          Length = 654

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 218/687 (31%), Positives = 356/687 (51%), Gaps = 71/687 (10%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    PI  D EYDAL     A     P     +    P  +IGG ++    K  H  
Sbjct: 26  AYYDDDAPIASDEEYDALYHEVLAYEQVNP---AQKSLFSPTTRIGGGVSEGFSKARH-- 80

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
               ++++W++ED+   +  +   W K+ +  ++ F  EPK DG  + + YEKG  V A 
Sbjct: 81  ----IKQMWSMEDIFSQLELVA--WLKRGEKQNLSFVAEPKFDGASLNLLYEKGMLVRAI 134

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            RGDG +GE+V+   R I +IP  L+++    IE+RGEV I K DF A+N+E    G   
Sbjct: 135 TRGDGITGEEVTQNARVIKSIP--LNISYDGRIEIRGEVVIKKADFDAINEERTRNGETL 192

Query: 213 YANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
            +NPRNAA+G LR+L+      R L F   G+G+ +   AK   E+++ +R LGF  ++ 
Sbjct: 193 LSNPRNAAAGSLRQLDSAVTAKRKLLFIPWGVGEQNLGLAK-HSEVMKFVRDLGFYRDDF 251

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            +  +   G+   YNE+   R      +DG+V +VD+ +  ++LG   + P++M++ KF 
Sbjct: 252 FKILDA-DGLAGAYNELLKQRDEKDVMMDGMVIRVDDLARCEELGYTVKFPKFMVAFKFP 310

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRLLD+ +Q+GR+G++TPV  L+ V I GA + +ATLHN D I+ L     VM+ 
Sbjct: 311 AIEKTTRLLDVALQVGRSGVVTPVGVLDEVVIDGARVKSATLHNFDEIERLG----VMK- 365

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
                  D + + R+G+VIPK+  +    R     P   P FCP C S ++ +     G 
Sbjct: 366 ------NDLISIIRSGDVIPKITSVFKERRDGTQTPIIRPKFCPECGSHLLDE-----GV 414

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
            +   +C   L C A+ +  + H+ S+   NI+GLG+  ++  +   +     R+  DI+
Sbjct: 415 FI---KCQ-NLNCRARVINSIIHYASKKCLNIDGLGEAIINLLY---EKGLISRV-IDIY 466

Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           +L         K E+++   GF D    NL D+I   +  SL RFI  LG  H+G   A+
Sbjct: 467 SL---------KFEDLMALEGFKDKKAQNLLDAIEASKGASLARFITGLGCEHIGEVAAK 517

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ-NPRNICAVEA 627
            +A      QNF +           D+  +  +   G+ +A ++++F + N   I A+++
Sbjct: 518 KIA------QNFGE------GWLEADFDEVKNLEGFGEEMANSLMDFIEVNKDEILALQS 565

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           +   V PS  R +   ++    K +V TGTL +  R + +  +   GA V   +S+KTD 
Sbjct: 566 I---VRPSFERKQITQNA-FSGKSVVITGTLSR-PRDEIKAELEGYGAKVVGSVSKKTDF 620

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           ++ G N GSKL+KA +LGV++++E +F
Sbjct: 621 VLAGSNAGSKLQKAVELGVRVIDEGEF 647


>gi|224531714|ref|ZP_03672346.1| DNA ligase, NAD-dependent [Borrelia valaisiana VS116]
 gi|224511179|gb|EEF81585.1| DNA ligase, NAD-dependent [Borrelia valaisiana VS116]
          Length = 660

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 212/708 (29%), Positives = 357/708 (50%), Gaps = 69/708 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFIYDKHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKI 134
            K G ++     +V HS+P LSL+K++++  L+ +I +I       D N  F  ++EPKI
Sbjct: 62  -KFGSDLLNDFEEVEHSVPILSLDKVYDLNLLKTWIDKI-------DFNDSFNISVEPKI 113

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y+ G    A  RG+G  G DV+  ++ I  IP  L   +  ++  RGEVYI+
Sbjct: 114 DGCSIVLYYKGGILEKALTRGNGKFGNDVTKNVKTIRYIPLFLDEEVDLVL--RGEVYIT 171

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKG 253
           K +F  +N  +     KPY+N RN ASGILRR++  ++  + LN F++        F   
Sbjct: 172 KENFFKINKFL----EKPYSNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTN 227

Query: 254 QYEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                 +++ LGF VN  +R   Q ++   ++SY  ++   R++  Y+IDG+V KV +FS
Sbjct: 228 NLAT-ARLKKLGFKVNPLIRFFDQKSSIKEVLSYIADITKKRNSFEYEIDGVVLKVSDFS 286

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L+++LG  +  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA ITN
Sbjct: 287 LRERLGYTSHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITN 346

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+DYI  +           D+ VGD V V R G+VIP  V++++N+       F  
Sbjct: 347 ATLHNQDYIMSI-----------DLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKI 392

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C++ +V++          AH       C +  +ER+K+F S++  +IEG   + 
Sbjct: 393 PENCPACKTVLVKE---------GAHFFCTNNNCPSVVIERIKYFCSKNCMDIEGFSDKI 443

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           + F F  E    S  I   IF           K+    GF    V+NL +SI   +    
Sbjct: 444 ISFLF--EKKFISSEIDLYIFNF--------CKLFEFKGFKGKRVSNLINSIEASKKKPF 493

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + + S+GI+ +G    R L   +L+  N   ++ ++    +  + +L+++  +G+ IA 
Sbjct: 494 SKLLLSMGIKELGENTIRLL---FLNNLNSFSKLFSLCQDKDFAFSTLLKIKGIGEKIAL 550

Query: 611 AIVEFYQNPRNICA------VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            I+E + +   I        +E  ++E     G      S  + +KK   TGT     R 
Sbjct: 551 NIIEAFNDSIMINKFKFFENLEFKMEECIVIDGE-----SRLLADKKFCITGTFDGYSRP 605

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
              + +   GA+  A +++  D ++ G+  GSKL+KA  L +KIM+ E
Sbjct: 606 IIIDKLKNKGAIFKACVTKDLDFLVAGEKAGSKLKKALNLNIKIMSFE 653


>gi|308189932|ref|YP_003922863.1| DNA ligase (NAD(+)) [Mycoplasma fermentans JER]
 gi|238809881|dbj|BAH69671.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624674|gb|ADN68979.1| DNA ligase (NAD(+)) [Mycoplasma fermentans JER]
          Length = 664

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 220/715 (30%), Positives = 371/715 (51%), Gaps = 60/715 (8%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A++    +K++  L  +++  +  YYQ + P + D EYD   +  + +   +P       
Sbjct: 4   AMNALDIKKKIIELSNKLNQWNKEYYQDNNPSVSDFEYDKALQELEQLEKKYPQFIYV-- 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            N P  K+G   +    KV H  P LSL K ++  ++ K++  I +    +D N   F++
Sbjct: 62  -NSPTQKLGSFADNKFKKVVHQKPMLSLSKAYDYSEIEKYVNNIEKLVPIEDIN---FSI 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPKIDG  I++ Y  G    A  RGDGH GEDV+  I  I +IP++++ +    +EVRGE
Sbjct: 118 EPKIDGLSISLHYNHGFLNQALTRGDGHEGEDVTENIYQIASIPKIINYDAE--LEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI 249
           V++ K +F  LN+ +I  G KP++NPRNAASG LR+L+PT +  R L  F++ L +  + 
Sbjct: 176 VFLPKAEFQRLNENLIKAGEKPFSNPRNAASGTLRQLDPTIVKNRQLASFLYELVEPQKH 235

Query: 250 FAKGQYEMLQKMRCLGFPVN--NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               Q + L+  + L  P N  + V +       +S++ EMK+    L YD DGLV K++
Sbjct: 236 NITTQEQALEFFQKLNIPTNPYHKVVEVEELEEAISFFAEMKN---KLNYDADGLVIKLN 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             +   ++G+ A+ P+  I+ K+  + A + + DI   +GRTG +T VA LEPV +   +
Sbjct: 293 NLTYWNKMGKTAKFPKHSIAFKYEVETAISTIKDIKTTVGRTGKITYVASLEPVELNQTI 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN ++I+ L           +I + D+V + +AGE+IPKV+ ++   +      
Sbjct: 353 VRAATLHNYNFIEDL-----------NININDQVQIVKAGEIIPKVLALV---KKQSKGV 398

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F     CP C S V+ ++     +      C     C    +  + HF SR + NI GLG
Sbjct: 399 FGKTLECPSCGS-VLVEIEDNVDQF-----CVNK-NCPEMTINAIYHFASRKSLNIVGLG 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +  F+K       ++   DIF L + +     K+E    + ++ V NL  +I K ++
Sbjct: 452 LITVKDFYKHN----LVKSIEDIFNLHKHKD-ELLKLER---YAELKVNNLLTNIGKAKD 503

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +  + +F+LGI+HVG   A+ ++K Y ++     E         D+   +  +  +G  
Sbjct: 504 STFSKVLFALGIKHVGERAAKLISKQYHNFDELICE--------KDELAKISAINNIGPK 555

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSE-IENKKLVFTGTLQKIQRH 664
           I  ++ E+ +N  N+     LL++    I  ++K   V+SE + N   V TG L   + H
Sbjct: 556 ILDSLKEYLKNEENV----KLLRKFD-EIFNYQKIATVASEKLINLSFVITGKLSNSRDH 610

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              + V   G  VS+ +S KT  ++VG++ GSKL+KA++L + I+NEEQF  +L+
Sbjct: 611 YV-DLVEANGGKVSSSVSSKTSFLLVGEDAGSKLDKAKKLNIAIINEEQFNEMLK 664


>gi|319777211|ref|YP_004136862.1| DNA ligase [Mycoplasma fermentans M64]
 gi|318038286|gb|ADV34485.1| DNA ligase [Mycoplasma fermentans M64]
          Length = 660

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 219/708 (30%), Positives = 368/708 (51%), Gaps = 60/708 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K++  L  +++  +  YYQ + P + D EYD   +  + +   +P        N P  K
Sbjct: 7   KKKIIELSNKLNQWNKEYYQDNNPSVSDFEYDKALQELEQLEKKYPQFIYV---NSPTQK 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +    KV H  P LSL K ++  ++ K++  I +    +D N   F++EPKIDG 
Sbjct: 64  LGSFADNKFKKVVHQKPMLSLSKAYDYSEIEKYVNNIEKLVPIEDIN---FSIEPKIDGL 120

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G    A  RGDGH GEDV+  I  I +IP++++ +    +EVRGEV++ K +
Sbjct: 121 SISLHYNHGFLNQALTRGDGHEGEDVTENIYQIASIPKIINYDAE--LEVRGEVFLPKAE 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+ +I  G KP++NPRNAASG LR+L+PT +  R L  F++ L +  +     Q +
Sbjct: 179 FQRLNENLIKAGEKPFSNPRNAASGTLRQLDPTIVKNRQLASFLYELVEPQKHNITTQEQ 238

Query: 257 MLQKMRCLGFPVN--NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            L+  + L  P N  + V +       +S++ EMK+    L YD DGLV K++  +   +
Sbjct: 239 ALEFFQKLNIPTNPYHKVVEVEELEEAISFFAEMKN---KLNYDADGLVIKLNNLTYWNK 295

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G+ A+ P+  I+ K+  + A + + DI   +GRTG +T VA LEPV +   ++  ATLH
Sbjct: 296 MGKTAKFPKHSIAFKYEVETAISTIKDIKTTVGRTGKITYVASLEPVELNQTIVRAATLH 355

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N ++I+ L           +I + D+V + +AGE+IPKV+ ++   +      F     C
Sbjct: 356 NYNFIEDL-----------NININDQVQIVKAGEIIPKVLALV---KKQSKGVFGKTLEC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S V+ ++     +      C     C    +  + HF SR + NI GLG   +  F
Sbjct: 402 PSCGS-VLVEIEDNVDQF-----CVNK-NCPEMTINAIYHFASRKSLNIVGLGLITVKDF 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           +K       ++   DIF L + +     K+E    + ++ V NL  +I K ++ +  + +
Sbjct: 455 YKHN----LVKSIEDIFNLHKHKD-ELLKLER---YAELKVNNLLTNIGKAKDSTFSKVL 506

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGI+HVG   A+ ++K Y ++     E         D+   +  +  +G  I  ++ E
Sbjct: 507 FALGIKHVGERAAKLISKQYHNFDELICE--------KDELAKISAINNIGPKILDSLKE 558

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSE-IENKKLVFTGTLQKIQRHKAQEYVT 671
           + +N  N+     LL++    I  ++K   V+SE + N   V TG L   + H   + V 
Sbjct: 559 YLKNEENV----KLLRKFD-EIFNYQKIATVASEKLINLSFVITGKLSNSRDHYV-DLVE 612

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G  VS+ +S KT  ++VG++ GSKL+KA++L + I+NEEQF  +L+
Sbjct: 613 ANGGKVSSSVSSKTSFLLVGEDAGSKLDKAKKLNIAIINEEQFNEMLK 660


>gi|290962622|ref|YP_003493804.1| DNA ligase [Streptomyces scabiei 87.22]
 gi|260652148|emb|CBG75280.1| putative DNA ligase [Streptomyces scabiei 87.22]
          Length = 704

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 215/712 (30%), Positives = 340/712 (47%), Gaps = 70/712 (9%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY      + D  YD L R       A P+    E P G +   GG +      V H++
Sbjct: 37  AYYTGGTSALDDDTYDRLVRGIAVWEAAHPEQVLPESPTGKV--AGGAVE---GDVPHTV 91

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             LSL+ +++ E+   +   + R   +   +   F +EPK+DG  +  RY +G+      
Sbjct: 92  AMLSLDNVFSAEEFTAWTASLAR---RIGHDVERFGVEPKLDGLAVAARYTRGRLTRLIT 148

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG +GEDVS  I  I  +PR L+   P  +EVRGEV ++   F   N+     G +P+
Sbjct: 149 RGDGTAGEDVSHAIGTIEGLPRELAE--PVTVEVRGEVLMTTAQFEHANEVRTEHGGQPF 206

Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGL----GKTSEIFAK-GQYEMLQKM-RCLGFP 267
           ANPRNAA+G LR       T  + FF +GL    G  ++  A+ G+    + M R  G  
Sbjct: 207 ANPRNAAAGTLR-ARERAYTVPMTFFGYGLLALPGTDADSAARLGELAHSELMARAAGLG 265

Query: 268 VNN-------GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           VN        GV  A T   ++    E+  +R+ LP+ IDG+V K D  + Q+  G   R
Sbjct: 266 VNTTASTAVPGV-TAATVEEVLDRVKEIAGLRAELPFGIDGIVIKADLAADQRAAGSGTR 324

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I++K    +  TRLL++   +GRTGI+ P   LEPV I G+ IT ATLHN   I 
Sbjct: 325 APRWAIAYKLPAVEKITRLLEVQWNVGRTGIIAPRGVLEPVEIDGSTITYATLHNPADIT 384

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                       RD+R+GD V+V RAG+VIP+V   + + R  D QP  FP  CP C S 
Sbjct: 385 -----------RRDLRLGDHVMVHRAGDVIPRVEAPVAHLRTGDEQPIVFPEVCPRCGSG 433

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +       TG+     RC  G  C    +  L + V RD  ++EGLG  ++    +    
Sbjct: 434 I------DTGE--QRWRCENGRNC--HLVASLSYAVGRDQLDVEGLGHTRVVQLVE---- 479

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
           A  +   AD+F L R Q  S  ++      G+ S  NL  +++  R   L R + +LG+R
Sbjct: 480 AGLVADLADLFALTREQLLSLDRM------GETSTDNLLAALDTARGRPLSRVLCALGVR 533

Query: 561 HVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIR-----VPLVGDIIAQA 611
             G  ++R +A+++ +  +     A+ I  +     +   S++       PL+  ++A  
Sbjct: 534 GTGRSMSRRIARHFATMDDIRAADAEAIQRVEGIGTEKAPSIVAELAELAPLIDKLVAAG 593

Query: 612 I--VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +   E    P          +E +   G     ++  +       TG L+K+ R++  E 
Sbjct: 594 VNMTEPGATPPAPAGDPEGPEEGAEGAGGPLAGMAVVVTG---AMTGVLEKLSRNQMNEL 650

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           + + G   S+ +S+KT +++ G+N GSK  +A+ LGV++   ++F  L+  +
Sbjct: 651 IERAGGRASSSVSKKTSLVVAGENAGSKRARAESLGVRLAGPDEFAALVADF 702


>gi|314923733|gb|EFS87564.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL001PA1]
 gi|315104373|gb|EFT76349.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA2]
 gi|327328187|gb|EGE69956.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL103PA1]
          Length = 740

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 222/746 (29%), Positives = 358/746 (47%), Gaps = 80/746 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P  +
Sbjct: 21  RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G    ++ F  V H    LSL+ ++  ++L ++I+R+     K  +    F  E KIDG
Sbjct: 78  VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             + + Y  G+ V  A RGDG  GEDV+A +R I  IP+ L+ + +P ++EVRGEV+   
Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN  ++  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G         Q
Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253

Query: 255 YEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                K+   G PV+     V  A+     V+ + E    R    + IDG+V KVD+ SL
Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGES---RDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS------ 520
                 E     D   +  +P          A +F LQ          RR++ +      
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPW 534

Query: 521 -------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F +LL+
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730


>gi|314966144|gb|EFT10243.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA2]
          Length = 740

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 222/746 (29%), Positives = 358/746 (47%), Gaps = 80/746 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P  +
Sbjct: 21  RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G    ++ F  V H    LSL+ ++  ++L ++I+R+     K  +    F  E KIDG
Sbjct: 78  VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             + + Y  G+ V  A RGDG  GEDV+A +R I  IP+ L+ + +P ++EVRGEV+   
Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN  ++  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G         Q
Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253

Query: 255 YEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                K+   G PV+     V  A+     V+ + E    R    + IDG+V KVD+ SL
Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGES---RGEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS------ 520
                 E     D   +  +P          A +F LQ          RR++ +      
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPW 534

Query: 521 -------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F +LL+
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730


>gi|308450080|ref|XP_003088175.1| hypothetical protein CRE_02776 [Caenorhabditis remanei]
 gi|308249279|gb|EFO93231.1| hypothetical protein CRE_02776 [Caenorhabditis remanei]
          Length = 1202

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 230/811 (28%), Positives = 378/811 (46%), Gaps = 131/811 (16%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP+E    E AR E   L  EI  +   YY  +  ++ D++YD L  R +A+  AFP+LA
Sbjct: 172 IPVE---FEAARVEAEQLTAEIERYRAAYYSEATSLVSDAQYDELFHRLEALERAFPELA 228

Query: 67  RSEDPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
             + P     ++G  +  + F +  H+   LSL+ ++++++ R++  +     +     +
Sbjct: 229 GQDSPT---QEVGSAVASAGFPEHEHAERMLSLDNVFSLDEFREWAEKA----RASSGRA 281

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEI 184
           + +  E KIDG  I + Y  G    A  RGDG  GED++  +  IP IPRVL    IPE 
Sbjct: 282 VRWLTELKIDGLAIALAYRNGVLETATTRGDGRVGEDITENVDLIPVIPRVLEGEGIPEF 341

Query: 185 IEVRGEVYISKNDFLALND--------------------EMIAVGRKPYANPRNAASGIL 224
            E RGEV+++  +F ALN+                    E I V    +AN RN A+G L
Sbjct: 342 FEARGEVFLTTENFEALNERQHALQAEFAADQLAKGVPAEKITVRFPEFANARNTAAGSL 401

Query: 225 RRLNPTDITR----------YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274
           R+       R           L+ +VHG+G         Q +  + +   G PV+   R 
Sbjct: 402 RQRAEKKNERELELMRDRLGRLSLYVHGIGAWQHPDFANQSDAYELLSSWGLPVSPHSRV 461

Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334
            ++   ++ +  +  + R    ++IDG+V K+DE  L ++LGE +R+PRW I++K+  ++
Sbjct: 462 LDSVDEVLEFIEDRGAHRHDFEHEIDGIVIKIDELELHRELGETSRAPRWAIAYKYPPEE 521

Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394
             T+LL I + +GRTG  TP A +EPV + G+ ++ ATLHN+  +K            + 
Sbjct: 522 VYTKLLAIRVGVGRTGRATPYAVMEPVKVAGSTVSQATLHNQQVVK-----------AKG 570

Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
           + +GD V++++AG+VIP+V+  ++  R      +  P  CP C +  +R +  K G +  
Sbjct: 571 VLIGDTVVLRKAGDVIPEVLGAVLERRDGSEVEWQMPVECPECGTE-LRAM--KEGDI-- 625

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTL 513
             RC    AC AQ   R++H  SR   +IE LG+       + E P+   +   A +F L
Sbjct: 626 DLRCPNARACPAQVRGRVEHIGSRGGLDIEVLGEITAAALTQPEVPSVPPLETEAGLFDL 685

Query: 514 Q-----------RRQQTSTTKIENILG-------FGDVSV-----TNLYDSINKR----- 545
                       R  +T    I+   G       F  V+V         D+  +R     
Sbjct: 686 TLEELVPITVVVRDSETGEPVIDEATGEPRRRSPFQRVTVEYPPEAEGMDATARRQAGFR 745

Query: 546 ----------------------RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
                                 +   L R I SL IRHVG   AR+LA ++ S       
Sbjct: 746 KDHRVVRPSKDAETFLAELERAKTKPLWRLIVSLNIRHVGPVAARALADWFGS------- 798

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE----ALLKEVSPSIGRH 639
           ++ I A + ++   L  V  VG IIA++++E+++   +   VE    A ++  +P    H
Sbjct: 799 LDAIRAASVEE---LSAVDGVGGIIAESLLEWFEVDWHREIVERWTAAGVQWTTPG---H 852

Query: 640 EKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
               ++  E   L     V TG+L    R  A+E + Q G   ++ +S+KTD +  G   
Sbjct: 853 PGPGAAVAEGGVLAGLTVVATGSLDGFTRDGAKEAIIQAGGKAASSVSKKTDFVAAGPGA 912

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GSKL KA++LG+ +++  QF  L+ +    L
Sbjct: 913 GSKLAKAEELGIPVLDASQFAVLVSEGPAAL 943


>gi|314919398|gb|EFS83229.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA1]
          Length = 740

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 223/748 (29%), Positives = 357/748 (47%), Gaps = 80/748 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P 
Sbjct: 19  EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 75

Query: 76  NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            ++G    ++ F  V H    LSL+ ++  ++L +++ R+     K  +    F  E KI
Sbjct: 76  QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ + +P ++EVRGEV+ 
Sbjct: 132 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
              DF  LN  +I  G+ P+A PRNAA+G LR+ +     +R L+  VHG+G        
Sbjct: 192 PVADFTDLNAALIEAGKNPFATPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 251

Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            Q     K+   G PV+     V   +  H  V+ + E    R    + IDG+V KVD+ 
Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 308

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ + 
Sbjct: 309 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 368

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F 
Sbjct: 369 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 417

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +
Sbjct: 418 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 472

Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520
                   E     D   +  +P          A +F LQ          RR++ +    
Sbjct: 473 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 532

Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
                    T            +   ++D + K ++  L R + +L IRHVG   AR+LA
Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ S +   +     +A           V  VG+IIA+++  +++   +   +      
Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG
Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +N GSK  KA+ LG  I++E  F  LL+
Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRDLLE 730


>gi|282854737|ref|ZP_06264072.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
 gi|282582319|gb|EFB87701.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
 gi|314982008|gb|EFT26101.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA3]
 gi|315090823|gb|EFT62799.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA4]
          Length = 740

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 222/746 (29%), Positives = 358/746 (47%), Gaps = 80/746 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P  +
Sbjct: 21  RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G    ++ F  V H    LSL+ ++  ++L ++I+R+     K  +    F  E KIDG
Sbjct: 78  VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             + + Y  G+ V  A RGDG  GEDV+A +R I  IP+ L+ + +P ++EVRGEV+   
Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN  ++  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G         Q
Sbjct: 194 ADFADLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253

Query: 255 YEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                K+   G PV+     V  A+     V+ + E    R    + IDG+V KVD+ SL
Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGES---RDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS------ 520
                 E     D   +  +P          A +F LQ          RR++ +      
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPW 534

Query: 521 -------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F +LL+
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730


>gi|315606212|ref|ZP_07881239.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312100|gb|EFU60190.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 777

 Score =  301 bits (770), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 175/492 (35%), Positives = 272/492 (55%), Gaps = 33/492 (6%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           ++P+   + E  RK    L + I      YY    P I D++YD + R  + I   +P L
Sbjct: 1   MVPMSDPTFETTRKRYDELVRSIEEARAAYYDRDSPTISDADYDRMYRELEEIEERYPQL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
             ++ P      +GG ++ S  +V H    +SL+ ++++E+L  +  RI       D   
Sbjct: 61  RGADSPT---MSVGGSVDSSFTEVRHLAQMMSLDDVFSLEELAGWEARISEATGIVDPP- 116

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
              T E K+DG  I + YE+G+ V AA RGDG+ GED++A  R I +IP+ L+  +P  I
Sbjct: 117 --MTTEVKVDGLSINLLYEEGRLVRAATRGDGYVGEDITANARTIASIPQTLTGPVPRRI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEVY    DF A N+  +A G K + N RNAA+G LR+ +P +   R L    HG+G
Sbjct: 175 EVRGEVYFPVADFAAFNEARVAAGEKAFVNARNAAAGSLRQKDPAETAKRPLAMVAHGIG 234

Query: 245 --KTSEIFA-----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
             +  E FA     +G YE L   R  G PV+   R       I     ++ + R +L +
Sbjct: 235 FVEAGEGFAEPTTQQGWYEQL---RDWGLPVSPYTRLLTGRKAIEERIEQIGAQRHSLDH 291

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V K+++ +LQ+ LG  +R+PRW  ++KF  ++  TRLLDI +Q+GRTG +TP   
Sbjct: 292 EIDGVVVKINDLALQRSLGSTSRAPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGV 351

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +E V + G+ ++ ATLHN         + +V R G  + +GD V++++AG+VIP++V  +
Sbjct: 352 MESVLVAGSNVSRATLHN---------AQEVARKG--VLIGDLVVLRKAGDVIPEIVAPV 400

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           ++ R+   +PF  PS CP C + +V++   K G +    RC    AC AQ  ERL H  +
Sbjct: 401 MDARNGSERPFVMPSECPSCATPLVQE---KEGDV--DLRCPNKGACPAQITERLAHVGA 455

Query: 478 RDAFNIEGLGKQ 489
           R A ++EGLG +
Sbjct: 456 RSALDVEGLGDE 467



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 15/205 (7%)

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
           R QT    +E     G      +   ++K +N  L R + +L IRHVG   AR+LA  + 
Sbjct: 579 RGQTVYEPVETSASKG---TEKMLAELDKAKNQPLARVLVALSIRHVGPTAARALADAFR 635

Query: 576 SYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
           S     A  +  + A           V  VG+ I +++ +++    ++  +EA  +    
Sbjct: 636 SMDALRAASLEELSA-----------VEGVGEEIGRSLRDWFTVDWHLAVLEAWARAGVR 684

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                 + VS  +    +V +G +    R  A+E +T  G   +  +S+KT +++ G   
Sbjct: 685 MADEEREAVSDVLAGLTIVVSGAMPGYDREGAKEAITSRGGKAAGSVSKKTSLVVAGPGA 744

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQ 719
           GSK  KA+ LGV ++ E+QF  LL+
Sbjct: 745 GSKAAKAEALGVPVITEQQFADLLE 769


>gi|32491184|ref|NP_871438.1| hypothetical protein WGLp435 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|81741654|sp|Q8D2B9|DNLJ_WIGBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|25166391|dbj|BAC24581.1| lig [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 591

 Score =  300 bits (768), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 195/623 (31%), Positives = 329/623 (52%), Gaps = 56/623 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + + ++ +L ++I   ++ YY  +  ++ D +YD+     + +   +     +   N   
Sbjct: 9   KIKTKILNLRKKIEMWNNNYYVKNLSLVSDEKYDSTLFELNELEKKYSMFLNTSYSN--- 65

Query: 76  NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYR--FWQKKDDNSIFFTLEP 132
            KI  +   + FK + H    LSLE I+N ++L  F  ++ +  F+ +K     ++  E 
Sbjct: 66  -KIVAKNICNKFKKIKHLSNMLSLESIFNYKNLLNFHEKVKKNLFYNEKR----YYCCEL 120

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRG 189
           KIDG  I + Y+ G    A+ RGDG  GEDV+     I +IP +L   +L+ P+ IE+RG
Sbjct: 121 KIDGLAINLIYKNGILDSASTRGDGLQGEDVTKNALEIKSIPHILKKNNLSFPKKIEIRG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247
           EV+I  + F  +N  + +  +K ++N RN ASG LR++NP  IT  R L+F+ +G+G  +
Sbjct: 181 EVFIKLSTFNKINKMLKSKRKKLFSNARNMASGSLRQINP-KITKNRSLSFYGYGIGYVN 239

Query: 248 EI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           E  +   Q++ L+ +   G P+        + + + ++Y +   IR  L ++IDG+V KV
Sbjct: 240 EKKYYYDQHDALKLINSWGIPIEKNTELCKSLNEVKNFYEKSIKIRDYLDFNIDGIVVKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +   LQK+LG  ++ PRW I++KF+ ++  T++L ++  +GRTG++TPVA+L+PV   G 
Sbjct: 300 NSMKLQKKLGCSSKYPRWAIAYKFSSEEKCTKILGVNFNVGRTGVITPVAKLKPVYFMGT 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +I  ++LHN+D I  L            I + D V +K++G+VIPK+  +I  E+  + +
Sbjct: 360 IIKYSSLHNKDIIDKL-----------GIMINDTVCLKKSGDVIPKISRVIF-EKRKNVK 407

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP  C  C+S++   L  K         CTGG  C AQ+ + L HFVSR+A NI+G+
Sbjct: 408 EIIFPKTCIFCKSKIEFCLRKKN------LYCTGGFLCYAQRKQLLNHFVSREALNIKGM 461

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +    + +     I+ P+DIF L      +T KI  + G G  S  NL   I K +
Sbjct: 462 GNKIISQLIEKK----IIKYPSDIFKL------NTDKIIFLKGMGLKSSENLIKEIIKSK 511

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L R I+ +GI +VG   + +LA YY +  NF           N  +  L  +  +G 
Sbjct: 512 TTELYRVIYGIGIPNVGIYTSMNLANYYKNISNFI----------NTSYEDLRSIKGIGS 561

Query: 607 IIAQAIVEFYQNPRNICAVEALL 629
             +  I +F ++ RNI  +  LL
Sbjct: 562 FTSNCIKKFLKDKRNISIISDLL 584


>gi|315095035|gb|EFT67011.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL060PA1]
          Length = 740

 Score =  300 bits (768), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 222/746 (29%), Positives = 358/746 (47%), Gaps = 80/746 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P  +
Sbjct: 21  RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77

Query: 78  IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G    ++ F  V H    LSL+ ++  ++L ++I+R+     K  +    F  E KIDG
Sbjct: 78  VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             + + Y  G+ V  A RGDG  GEDV+A +R I  IP+ L+ + +P ++EVRGEV+   
Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN  ++  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G         Q
Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253

Query: 255 YEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                K+   G PV+     V  A+     V+ + E    R    + IDG+V KVD+ SL
Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGES---RDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN         + +V R G  + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS------ 520
                 E     D   +  +P          A +F LQ          RR++ +      
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPW 534

Query: 521 -------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F +LL+
Sbjct: 705 AGSKEIKARDLGRPILDEAGFRYLLE 730


>gi|195941686|ref|ZP_03087068.1| DNA ligase (lig) [Borrelia burgdorferi 80a]
 gi|225549484|ref|ZP_03770450.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 118a]
 gi|225369761|gb|EEG99208.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 118a]
          Length = 660

 Score =  300 bits (768), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 209/708 (29%), Positives = 356/708 (50%), Gaps = 67/708 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F    
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T          K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+E + +       +    +E  ++EV    G ++      +  KK   TGT     R  
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
             + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E 
Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654


>gi|218754780|ref|ZP_03533576.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis GM 1503]
 gi|289763195|ref|ZP_06522573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM
           1503]
 gi|289710701|gb|EFD74717.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM
           1503]
          Length = 690

 Score =  300 bits (767), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 215/710 (30%), Positives = 346/710 (48%), Gaps = 52/710 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L     P+ P   +
Sbjct: 15  RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 71

Query: 79  GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG    + F+ V H    LSL+  +  ++L  +  RI+     +  ++  +  E KIDG 
Sbjct: 72  GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +PE++EVRGEV+ 
Sbjct: 128 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 187

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG        
Sbjct: 188 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 247

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             ++    +R  G PV+     A    G+   + Y+ E    R  + ++IDG+V KVDE 
Sbjct: 248 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW I++K+  ++A T+LLDI  +         V   +    G   + 
Sbjct: 305 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIPGERRPHRADHAVCVHDAGEGGRVDVG 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIR-VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
            ATLHN         + +  +G  D+R  GD    +R  EV+  VV++    R    + F
Sbjct: 365 QATLHN---------ASRSAQGRADLRHRGDPQGRRRDPEVLGPVVEL----RDGSEREF 411

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S +  +   K G   A  RC     C  Q  ER+ H  SR+  +IE LG 
Sbjct: 412 IMPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGY 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +      +++     I    ++F L  R    T       G    +   L  +++K +  
Sbjct: 467 EAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAA 522

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R + +L IRHVG   AR+LA  + S       ++ I A + D    L  V  VG  I
Sbjct: 523 PLWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTI 572

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A A+ E++    +   V+         +   +++V   +    +V TG+L    R  A+E
Sbjct: 573 AAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKE 632

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL
Sbjct: 633 AIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 682


>gi|332755049|gb|EGJ85414.1| DNA ligase, NAD-dependent [Shigella flexneri 4343-70]
          Length = 421

 Score =  300 bits (767), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 167/457 (36%), Positives = 271/457 (59%), Gaps = 42/457 (9%)

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            PV++ V    +   ++++Y++++  R TL +DIDG+V KV+    Q+QLG  AR+PRW 
Sbjct: 1   MPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWA 60

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++NATLHN D I+ L   
Sbjct: 61  VAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERL--- 117

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +R+GD+V+++RAG+VIP+VV+++++ER  D +   FP+ CP+C S    D+
Sbjct: 118 --------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGS----DV 165

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
               G+ VA  RCTGGL C AQ+ E LKHFVSR A +++G+G + +D   + E     + 
Sbjct: 166 ERVEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKE----YVH 219

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
            PAD+F L      +  K+  +   G     N+ +++ K +  +  RF+++LGIR VG  
Sbjct: 220 TPADLFKL------TAGKLTGLERMGPKLAQNVVNALEKAKETTFARFLYALGIREVGEA 273

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A  LA Y+ + +  A E  +I          L +VP VG ++A  +  F+    N   +
Sbjct: 274 TAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVASHVHNFFAEESNRNVI 323

Query: 626 EALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
             LL E     +P +   E+ + S    K +V TG+L ++ R  A+  + +LGA V+  +
Sbjct: 324 SELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSV 382

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 383 SKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 419


>gi|313888253|ref|ZP_07821924.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845656|gb|EFR33046.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 665

 Score =  300 bits (767), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 211/700 (30%), Positives = 343/700 (49%), Gaps = 61/700 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+ +L +EI   +  YY    P++ D+EYD L  +   +      +     P  P  ++
Sbjct: 6   KEMENLIKEIDKLNYHYYTLDDPLLSDAEYDKLYDKLVNLEKESGTVL----PYSPTTRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLEP 132
           GG +     K TH     S++K    E L  +  RI +F    + N++       F +E 
Sbjct: 62  GGAVLSKFEKHTHLARLYSMDKAQGDEALLGWFNRIEKFVSDYNQNNVNKLPEPEFIVEL 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K DG  I + YE    V A+ RG+G  GE++   ++ I ++P  L ++ P  IEV+GE  
Sbjct: 122 KFDGLTINLTYENQNLVMASTRGNGIIGEEILEQVKTIYSVP--LRISYPGKIEVQGEGL 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           +  ++    N E      +   N RNAA+G LR L+P     R L  F + +G   E   
Sbjct: 180 MPLSELEKYNQE----NDEKLKNARNAAAGALRNLDPKVTKKRNLTAFFYNVGYIEEDMF 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K   ++   +R   F V+    +   F  I     E+   R+ L   IDG+  KV++   
Sbjct: 236 KSDDDIKNFLRENNFKVSKYNFKVKKFSDITQKIKEIGENRNKLDVLIDGVTIKVNDIET 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +K LG   + PRW +++KF  ++ ST LLD+   +GRT  +TP A LEPV+IGG  +  A
Sbjct: 296 RKALGYTNKFPRWAVAYKFEAEEISTTLLDVVWNVGRTAKVTPSAILEPVDIGGVTVQRA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N D          ++R  + +++G RVL++R+ +VIP+++  + ++   + +    P
Sbjct: 356 TLNNYD---------DILR--KKVKIGSRVLIRRSNDVIPEILGTLPSDN--ETREIEKP 402

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
             CP C S + +D           H  C   L+C  Q + RL HF SRDA +IEG  ++ 
Sbjct: 403 KTCPYCGSHLYQD---------GVHIFCPNTLSCVPQLVSRLTHFASRDAMDIEGFSEKT 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++    +      ++   DI+ L+         I  I GF +    NL ++I   +   L
Sbjct: 454 IEKLMAT----IGLKEIPDIYKLKYED------IIKIEGFKEKRTNNLLNAIENSKKPHL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             FI++LGI +VG + AR LA Y+ S+              N     L+ +  +G+I A+
Sbjct: 504 SNFIYALGIPNVGIKTARDLADYFKSFDKLK----------NSQEEELVSIGDIGNITAK 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            IVEF+ + R I AV+ L       +   +      ++    V TGTL+ I R + +E +
Sbjct: 554 EIVEFFHDDRIIGAVDELFDLGLKPVYEDDNKGPKPLDKNTFVLTGTLE-IPRKELEEKL 612

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             LGA V+  +S+ TD ++VG+NPGSK EKA+ L +KI++
Sbjct: 613 ISLGAKVTGSVSKNTDYVVVGENPGSKYEKARSLDIKILS 652


>gi|15594897|ref|NP_212686.1| NAD-dependent DNA ligase LigA [Borrelia burgdorferi B31]
 gi|7673988|sp|O51502|DNLJ_BORBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2688477|gb|AAC66923.1| DNA ligase (lig) [Borrelia burgdorferi B31]
          Length = 660

 Score =  300 bits (767), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 209/708 (29%), Positives = 356/708 (50%), Gaps = 67/708 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F    
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T          K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+E + +       +    +E  ++EV    G ++      +  KK   TGT     R  
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
             + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E 
Sbjct: 607 IIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654


>gi|323359739|ref|YP_004226135.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037]
 gi|323276110|dbj|BAJ76255.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037]
          Length = 810

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 235/816 (28%), Positives = 373/816 (45%), Gaps = 136/816 (16%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS++ AR E   L Q I+   + YY     ++ D+ YD    R +A+    P+L   +  
Sbjct: 10  LSLDDARAEAIDLTQRITDAREAYYGRDAELVDDATYDGWMHRLEALERRHPEL---QGQ 66

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +G      L  + H+   LSL+ +++ ++LR +  +     +     ++ +  E
Sbjct: 67  DSPTLSVGAAEATDLATIEHAERMLSLDNVFSPDELRDWAVKT----EAAAGRAVHWLSE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
            KIDG  I++RYE G    AA RGDG  GE V+     +  +PR L     P I+EVRGE
Sbjct: 123 LKIDGLAISLRYENGVLTSAATRGDGRVGEIVTENALRLADVPRELGGEGHPPIVEVRGE 182

Query: 191 VYISKNDFLALN-------DEMIAVGRKPYA-------------------------NPRN 218
           V+I    F  LN       D  +A  R+ +A                         NPRN
Sbjct: 183 VFIPVAKFENLNRLQGEYRDRAVAEARERHAGRRAGRPFDEEKAEQAAARRFPAFANPRN 242

Query: 219 AASGILRRL--NPTDIT--------RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
           AASG LR+     T +           L+ +VHG+G   +     Q E+   +   G P 
Sbjct: 243 AASGGLRQQIDKKTGLELEAGLARIESLSLYVHGIGAWPDPPVAAQSEIYDLLASWGLPT 302

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
           +   R  ++  G++S+       R  + ++IDG+V KVDE +L  +LG  +R+PRW I++
Sbjct: 303 SPYSRVESSIDGVLSFVAHYGEHRHDVEHEIDGVVVKVDELALHDELGATSRAPRWAIAY 362

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K+  +Q +T+LLDI + +GRTG  TP A +EP  + G+++  ATLHN+D +K        
Sbjct: 363 KYPPEQVNTKLLDIVVSVGRTGRATPFAVMEPAKVAGSVVRQATLHNQDVVK-------- 414

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP- 447
           ++G   + +GD V++++AG+VIP+V+  +V  R    + F  P+ CP C +     L P 
Sbjct: 415 VKG---VLIGDTVVLRKAGDVIPEVLGPVVELRDGTERAFVMPADCPECGT----PLRPA 467

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF-SIRI 506
           K G +    RC    +C AQ   R++H  SR A +IE LG+       + E P    +  
Sbjct: 468 KEGDI--DLRCPNARSCPAQVRGRVEHIGSRGALDIEALGEVTAAALTQPEVPERPPLDT 525

Query: 507 PADIFTLQ-----------RRQQTSTTKIENILG----------FGDVS----------- 534
            A +F L            R  +T   K++   G           G  S           
Sbjct: 526 EAGLFDLTVEQLVPIEVVVRDSETGERKVDPETGELVRRAPFQKLGPASYPPGAENLDPA 585

Query: 535 -------------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
                               T L   + K +   L R + SL IRHVG   AR+LA+++ 
Sbjct: 586 ERRRRGIRKDYREVLPSEQATKLVAELEKAKTKDLWRLLVSLNIRHVGPVAARALAQWFG 645

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSP 634
           S       ++ I A   ++   L  V  VG IIA A++++++   +   VE   +  V  
Sbjct: 646 S-------LDAIRAATREE---LAAVEGVGGIIADAVIDWFEVDWHREIVETWSRAGVRF 695

Query: 635 SIGRHEKNVSSEIENK-----KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           SI  H    ++           +V TG+L    R  AQE +   G   ++ +S+KTD + 
Sbjct: 696 SIPGHPGPGAAAAAGGVLAGLTVVATGSLDGYTREGAQEAILAAGGKAASSVSKKTDFVA 755

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            G   GSKL KA++LG++I++  QF  L++Q    L
Sbjct: 756 AGPGAGSKLAKAEELGLRILDAAQFRILVEQGPGAL 791


>gi|4235382|gb|AAD13194.1| NAD-dependent DNA ligase [Thermus sp. SM32]
          Length = 481

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 177/472 (37%), Positives = 268/472 (56%), Gaps = 37/472 (7%)

Query: 106 DLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSA 165
           DL+ F  R+ R   +  +    +T+E K+DG  + + YE+G  V+ A RGDG  GE+V+ 
Sbjct: 8   DLKAFEDRVDRALGR--EGPFVYTVEHKVDGLSVNLYYEEGILVFGAPRGDGEVGEEVTQ 65

Query: 166 CIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR 225
            +  IPTIPR L   +PE +EVRGEVY+    FL LN+E+   G K + NPRNAA+G LR
Sbjct: 66  NLLTIPTIPRRLK-GVPERLEVRGEVYMPIEAFLRLNEELEEAGEKVFKNPRNAAAGSLR 124

Query: 226 RLNPTDITRY---LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           + +P    +      F+  GLG   E   K QYE L   +  GFPV +G  +A    G+ 
Sbjct: 125 QKDPRITAKRGLRATFYALGLG-LEESGLKTQYEFLLWFKEKGFPVEHGFARATGAEGVE 183

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
             Y      R  LP++ DG+V K+DE +L ++LG  AR+PR+ I++KF  ++  TRLLD+
Sbjct: 184 RVYQGWLQKRRKLPFEADGVVVKLDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDV 243

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
             Q+GRTG +TPV  LEPV I G+ ++  TLHNE YI+ L           DIR+GD VL
Sbjct: 244 VFQVGRTGRVTPVGILEPVLIEGSEVSRVTLHNESYIEEL-----------DIRIGDWVL 292

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V +AG VIP+V+ ++   R    +P  +P  CP C   +V     K GK+   HRC   L
Sbjct: 293 VHKAGGVIPEVLRVLKERRTGAERPIVWPENCPECGHHLV-----KEGKV---HRCPNPL 344

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522
            C A++ E ++H+ SR A +I+GLG++ ++   ++      ++  AD++ L++       
Sbjct: 345 -CPAKRFEAIRHYASRKAMDIQGLGEKLIEKLLEN----GLVKDVADLYRLRKEDLVGLE 399

Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
           ++      G+ S  NL   I + ++  LER +++LG+  VG  +AR+LA  +
Sbjct: 400 RM------GEKSAENLLRQIEESKHRGLERLLYALGLPGVGEVLARNLAARF 445


>gi|226320519|ref|ZP_03796084.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 29805]
 gi|226234083|gb|EEH32799.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 29805]
          Length = 660

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 209/708 (29%), Positives = 356/708 (50%), Gaps = 67/708 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   RVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F    
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T          K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+E + +       +    +E  ++EV    G ++      +  KK   TGT     R  
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
             + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E 
Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654


>gi|312149444|gb|ADQ29515.1| DNA ligase, NAD-dependent [Borrelia burgdorferi N40]
          Length = 660

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 209/708 (29%), Positives = 355/708 (50%), Gaps = 67/708 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F    
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T          K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +       +  L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSILLKIKGIGEKIALN 551

Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+E + +       +    +E  ++EV    G ++      +  KK   TGT     R  
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
             + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E 
Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654


>gi|47459030|ref|YP_015892.1| NAD(+)-dependent DNA ligase [Mycoplasma mobile 163K]
 gi|81614352|sp|Q6KI95|DNLJ_MYCMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|47458358|gb|AAT27681.1| NAD(+)-dependent DNA ligase [Mycoplasma mobile 163K]
          Length = 671

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 226/708 (31%), Positives = 365/708 (51%), Gaps = 72/708 (10%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E + L+ +I+  +  Y+ Y +P++ DS YDA   +     + +  L  S+    P   IG
Sbjct: 19  EYNDLKNKINLWNKAYFDYDEPLVEDSIYDATLLKLIKFENQYKFLDNSD---SPTKNIG 75

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT---LEPKIDG 136
            +++    KV H  P LSL K +  +DL+ F   I +          FF    LE KIDG
Sbjct: 76  AKVSKKFSKVQHQFPMLSLNKAYKFDDLKIFERHINKLG--------FFPNYFLELKIDG 127

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I+++Y+ G  + A  RGDG SGEDV+  +  I  IP+ +  + P  IE+RGE+Y+SK+
Sbjct: 128 LSISLKYDNGNLIQALTRGDGISGEDVTENVFQIQDIPKQIKYSKP--IEIRGEIYLSKS 185

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK--TSEIFAKG 253
            F  +N+   +     +ANPRNAASG LR+L+ + +  R LN F + +      +I    
Sbjct: 186 TFYEINECQKSQNLTIFANPRNAASGSLRQLDSSIVKERKLNSFFYSVTNPLDHKIKNFN 245

Query: 254 QYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             E+  K      P +N  V      +  +  + E  + R  L Y+IDG+V KVD+FSL 
Sbjct: 246 DQELFLKENNFQVPSLNKFVDTIEKAYEFIKDF-EKNNYREKLNYEIDGIVVKVDDFSLY 304

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG+ ++ PR MI+ KF++    T+L+DI I +GRTG +T  A LEPV I G L++ AT
Sbjct: 305 DILGQTSKFPRSMIAFKFSDISIETKLIDIFISVGRTGKITYNAILEPVIINGTLVSAAT 364

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN +Y++ L            +   D V + +AGE+IPKVV +    +      F    
Sbjct: 365 LHNYEYVESL-----------KLNKNDNVKIIKAGEIIPKVVSL---SKKNSETIFKRIE 410

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           +C  C  ++V+   P+         C     C   +L +++HF S+ A NI GLG Q ++
Sbjct: 411 YCTSCNEKLVQ---PEDE---VDQYCINK-KCLMIRLRKIEHFASKKAMNILGLGFQNIE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FFK       +   +D+F L++ +      IE+   FG+ S  NL +SIN+ ++ SLE+
Sbjct: 464 KFFK----LGILTKYSDLFFLEKYKNL----IESQPSFGEKSFNNLIESINRSKSNSLEK 515

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF++GI+ +G   A+ +A       N  + ++N+I   N D+  L  +  +      ++
Sbjct: 516 FIFAIGIKQIGERSAKLIA-------NEVKLLSNLI---NFDFEKLNNIRDISCKTINSL 565

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQ 667
             F+ +   I  ++         +G   KN+ +E E+KKL     V TGTL K  R   +
Sbjct: 566 KCFFSDENEIEEIKI-----ILELGLDFKNLENEFESKKLQGLNFVITGTLSK-PRDFFK 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQF 714
           E + + G  V   +S + + ++ G+  GSK+EKAQ++  +KI++E +F
Sbjct: 620 ELIIKNGGNVLNSISNRINYLLTGEKSGSKIEKAQKINTIKILDENEF 667


>gi|219684330|ref|ZP_03539274.1| DNA ligase, NAD-dependent [Borrelia garinii PBr]
 gi|219672319|gb|EED29372.1| DNA ligase, NAD-dependent [Borrelia garinii PBr]
          Length = 660

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 209/704 (29%), Positives = 361/704 (51%), Gaps = 61/704 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E+  L++ I   D  YY  S P + D  YD    R   +    P+    + P    
Sbjct: 4   KIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESTHPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++  +  +V HS+P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  IR I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +F  +N  +     KPY + RN ASG+LRR++  ++  + LN F++     +E+  K  
Sbjct: 173 ENFFKINKFL----EKPYTSSRNLASGMLRRVDSREVASFPLNIFIYDF-LNAELEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              + K++ LGF ++  +R   Q ++   +++Y  ++   R++  Y+IDG+V KV +F L
Sbjct: 228 DLAIAKLKKLGFKIDPLIRFFDQKSSIKEVLNYIADITKQRNSFEYEIDGVVLKVSDFVL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG     P+W +++KF      +++  I +Q+GR+G +TPVA ++ V + GA ITNA
Sbjct: 288 REKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFITNA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  +            + VGD V V R G+VIP  V++++N+       F FP
Sbjct: 348 TLHNQDYIISI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKCSKGV--FKFP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ +V++          AH      +C +  +ER+K+F S++  +I+G   + +
Sbjct: 394 DNCPACKTVLVKE---------GAHFFCTNNSCPSVTVERIKYFCSKNCMDIKGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T       +  K+    GF D  V NL +SI   +     
Sbjct: 445 SFLFEKK----FISSEIDLYTF------NFYKLLKFKGFKDRKVYNLINSIEASKRKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +    +  + +L+++  +G+ IA  
Sbjct: 495 KLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRDFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           I+E + +   +      E L  ++  SI   + N    +  KK   TGT +   R    +
Sbjct: 552 IIEAFNDSTMLNKFKFFENLGFKMEESILIDDDN--RLLAGKKFCITGTFKGYSRPIIID 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            +   GA+    ++   D +IVG+  GSKLEKA  L VKIM+ E
Sbjct: 610 KLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFE 653


>gi|216264759|ref|ZP_03436751.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 156a]
 gi|223888694|ref|ZP_03623285.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 64b]
 gi|225548725|ref|ZP_03769772.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 94a]
 gi|215981232|gb|EEC22039.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 156a]
 gi|223885510|gb|EEF56609.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 64b]
 gi|225370755|gb|EEH00191.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 94a]
          Length = 660

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 209/708 (29%), Positives = 355/708 (50%), Gaps = 67/708 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F    
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I + A  F           K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKKFIFSEIDLYAFDF----------YKLLEFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+E + +       +    +E  ++EV    G ++      +  KK   TGT     R  
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
             + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E 
Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654


>gi|224532693|ref|ZP_03673310.1| DNA ligase, NAD-dependent [Borrelia burgdorferi WI91-23]
 gi|224512311|gb|EEF82695.1| DNA ligase, NAD-dependent [Borrelia burgdorferi WI91-23]
          Length = 660

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 208/707 (29%), Positives = 355/707 (50%), Gaps = 67/707 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F    
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T          K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+E + +       +    +E  ++EV    G ++      +  KK   TGT     R  
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
             + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E
Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFE 653


>gi|224533503|ref|ZP_03674092.1| DNA ligase, NAD-dependent [Borrelia burgdorferi CA-11.2a]
 gi|224513176|gb|EEF83538.1| DNA ligase, NAD-dependent [Borrelia burgdorferi CA-11.2a]
          Length = 660

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 207/707 (29%), Positives = 358/707 (50%), Gaps = 67/707 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F    
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T          K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G      L  ++ ++ +F++ +  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIMLL--FFNNFNSFSK-LFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+E + +       +    +E  ++EV    G ++      +  KK   TGT     R  
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
             + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E
Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFE 653


>gi|253575959|ref|ZP_04853293.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844753|gb|EES72767.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 672

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 215/718 (29%), Positives = 351/718 (48%), Gaps = 69/718 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI-AHAFPDLARSEDPNGPL 75
           A + +  L ++++ ++  YY   +PII D EYD L     A+ A     L     P+ P 
Sbjct: 3   AMQRMEQLVEQLNRYNYHYYTLDEPIISDKEYDQLYDELTALEAETGITL-----PDSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDNSIF----F 128
            ++GGE+        H  P  SL+K  N E L  +  R+ +    +  K+  +      +
Sbjct: 58  GRVGGELLEGFKPHRHLAPLWSLDKAQNEEQLLNWNNRVLKLIADYNSKNPTTPLPDPTY 117

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EII 185
            +E K DG  + + Y  G+ V AA RG+G  GE +   ++ I ++P    L IP     I
Sbjct: 118 VVELKFDGLTLNLTYTDGQLVQAATRGNGVVGEGILPQVKTIKSVP----LTIPYRDGTI 173

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           EV+GE  I     LA  +E  A   +P  N RNAA+G LR LNP T   R LN F + +G
Sbjct: 174 EVQGE-GIMNLSVLAKYNETAA---EPLKNARNAAAGALRNLNPRTTAERKLNAFFYNVG 229

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            +  +  +   EM+  ++   F VN  V    +F  ++   +E+   R TL Y IDG V 
Sbjct: 230 YSDNLKFQDHREMMAFLKDNRFKVNPYVTYHASFDKVIGALHEIVEKRPTLDYLIDGAVI 289

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+ +   ++ LG   + PRW ++ KF  ++ +T L  +   +GRTG +TP+A++EPV + 
Sbjct: 290 KITDMRTREVLGYTDKFPRWAVAFKFEAEETTTILESVSWNVGRTGKITPLAKVEPVELA 349

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  + N TL+N          G + R      +G RV ++R+ +VIP+++  + +E  P+
Sbjct: 350 GVTVQNCTLNN---------IGDIERKNLKYALGTRVFIRRSNDVIPEILGKVPDE--PE 398

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNI 483
                +P  CP C + + +           AH  C   L C  Q + R+ HF SRDA +I
Sbjct: 399 GGEIIYPEVCPACGTPLEQR---------GAHLFCNNRLGCKPQIVARITHFASRDAMDI 449

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           E   ++  +          ++R PAD++TL         K+E    FG+     L  +I 
Sbjct: 450 ETFSEKTAEQLHDE----LNLREPADLYTLTF---DDLIKLER---FGEKKANKLLQAIE 499

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +   L  F+F+LGI + G    + LA ++ S       +  +++   ++   L  +P 
Sbjct: 500 VSKGRDLASFLFALGIPNTGKSTTKVLADHFGS-------LEAVMSATTEE---LTALPD 549

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPS--IGRHEKNVSSEIENKKLVFTGTLQK 660
           +G I+A +IV F+ +P     +  +L+  VSP   +        S    K +V TGTL +
Sbjct: 550 IGGIVADSIVNFFADPFYQAGIRKMLELGVSPKAPVKSAAPVTGSFFSGKTVVLTGTLHQ 609

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R +A E +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ ++ +E  L  L
Sbjct: 610 MSRDEATERLEALGAKVTGSVSKKTDLVIAGEKAGSKLAKAQELGIPVIEDENELIRL 667


>gi|221218112|ref|ZP_03589578.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 72a]
 gi|221192060|gb|EEE18281.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 72a]
          Length = 660

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 208/707 (29%), Positives = 355/707 (50%), Gaps = 67/707 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F    
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T          K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+E + +       +    +E  ++EV    G ++      +  KK   TGT     R  
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
             + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E
Sbjct: 607 IIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFE 653


>gi|118444950|ref|YP_878905.1| NAD-dependent DNA ligase LigA [Clostridium novyi NT]
 gi|166215579|sp|A0Q2Q3|DNLJ_CLONN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118135406|gb|ABK62450.1| DNA ligase, NAD-dependent [Clostridium novyi NT]
          Length = 664

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 203/655 (30%), Positives = 342/655 (52%), Gaps = 60/655 (9%)

Query: 71  PNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLR----KFITRIYRFWQKKDDN- 124
           P  P  ++G ++ LS F K TH     SL K  +++++     K +  +  +    DD  
Sbjct: 54  PYSPTQRVG-DVVLSKFDKYTHKGKLWSLGKAQSLKEVEDWHNKNVKAVNEYNLTHDDKL 112

Query: 125 -SIFFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
             I + +  K DG  I   Y E G  V AA RG G  GE+++A  + I TIP  L ++  
Sbjct: 113 PPIKYIITKKFDGLTINCTYNEDGILVTAATRGTGEIGEEITAQAKTIKTIP--LKIDND 170

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241
            +IEV GE  ++K  F    +E   V   P  N RN A+G LR LN  +  R  L+ F +
Sbjct: 171 AVIEVHGEAIMTKEAF----EEYNKVAVVPLKNLRNGAAGALRNLNVKETARRNLSAFFY 226

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +G       K   EML+ ++  G P+++   + +T   I    N ++ IR+ L YDIDG
Sbjct: 227 DIGYNEGTPFKTYGEMLKFIKDHGIPMDDYAMECSTIEEIEKEINYIEEIRNKLNYDIDG 286

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
            V  VD+   ++ LG   + P+W +++KF  ++A+T+LL+++  +GR+G +TP A LEPV
Sbjct: 287 AVIAVDDMKTRELLGYTVKFPKWALAYKFEAQEATTKLLEVEWNVGRSGRVTPTAILEPV 346

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            IGG  +  ATL+N D I+         R G  +++G  V ++R+ +VIP+++  +V E 
Sbjct: 347 EIGGVTVKRATLNNMDDIE---------RKG--VKLGSTVFLRRSNDVIPEIMG-VVEES 394

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              ++    P+ CP C S +V++           + C   L+C  Q ++ + HF SR+A 
Sbjct: 395 LEGSKDIEAPTTCPYCGSEIVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAM 446

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI G  ++  +  F+       I+  +D++ +++       +      FG+    NL D+
Sbjct: 447 NIAGFSEKTAEQLFEE----LEIKSISDLYRIKKEDLLKLNR------FGEKKAQNLIDA 496

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   +   L  FI++LGI +VG + +  L K + +  N  +            +  L+ V
Sbjct: 497 IESSKECDLPSFIYALGIPNVGKKTSTDLCKKFKTLDNLKKA----------KFEELVSV 546

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIEN-KKLVFTGTLQ 659
             +GDI+AQ++++F+ +   + +++ LL   V+P     E+ +   I N K +V TG+L 
Sbjct: 547 EDIGDIVAQSVLDFFNDETILKSIDELLSLGVTPKF--KEEEIKENIFNGKTVVVTGSLS 604

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
              R++ +E +  LGA V+  +S+KTD ++VG +PGSK EKA QL +KI++EE F
Sbjct: 605 SFSRNEIKEKLQSLGAKVAGSVSKKTDYVLVGKDPGSKYEKALQLNIKIISEEDF 659


>gi|312147884|gb|ADQ30543.1| DNA ligase, NAD-dependent [Borrelia burgdorferi JD1]
          Length = 660

 Score =  297 bits (760), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 208/708 (29%), Positives = 355/708 (50%), Gaps = 67/708 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   RVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F    
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T          K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+E + +       +    +E  ++EV    G ++      +  KK   TGT     R  
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
             + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E 
Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654


>gi|226321858|ref|ZP_03797384.1| DNA ligase, NAD-dependent [Borrelia burgdorferi Bol26]
 gi|226233047|gb|EEH31800.1| DNA ligase, NAD-dependent [Borrelia burgdorferi Bol26]
          Length = 660

 Score =  297 bits (760), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 208/708 (29%), Positives = 355/708 (50%), Gaps = 67/708 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F    
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T          K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+E + +       +    +E  ++EV    G ++      +  KK   TGT     R  
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
             + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E 
Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654


>gi|237757130|ref|ZP_04585563.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237690707|gb|EEP59882.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 490

 Score =  296 bits (759), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 176/483 (36%), Positives = 270/483 (55%), Gaps = 39/483 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+ E+A+K +  L + I +HD  YY  ++P+I D EYD L +    I + +P+L     P
Sbjct: 25  LTKEEAKKIVEDLREVIRFHDWRYYILAQPVISDYEYDKLFKLLKDIENKYPELI---TP 81

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +I  E+     +V H  P LSL+  +N  DLR F  R+         + + +++E
Sbjct: 82  DSPTQRIPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVREL---TGLDKVEYSVE 138

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----IEV 187
           PK DG  I++ YEK  FV  A RGDG  GE+++  ++ I TIP  LS    +     +E+
Sbjct: 139 PKFDGAGISLIYEKDLFVRGATRGDGEVGEEITNNLKVIKTIP--LSAKFSQYGIDKVEI 196

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV I K+ F  +N+E +  G   +ANPRNAA+G +R  +P+++  R L  FV+ +   
Sbjct: 197 RGEVLIRKDLFKKMNEERLEEGLPLFANPRNAAAGSIRLQDPSEVAKRNLEAFVYHITYA 256

Query: 247 SE-------IFAKGQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPYD 298
            +          K   + ++ +  LGF     V +       ++ Y  E +  R T PY+
Sbjct: 257 EKDGKNLLGTVLKKHSDNIKMLHELGFKTPYPVMKVCIGIEEVIQYCEEWQRKRDTYPYE 316

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV++ SL  +LG  +  PRW I+ KF  +QA+T+++++  Q+GRTG +TPVA+L
Sbjct: 317 IDGMVIKVNDISLYDKLGFTSHHPRWAIAFKFKARQATTKIINVVFQVGRTGAITPVAKL 376

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV IGG ++++ +L NED+I+            +DIR+GD VLV+RAG+VIP VV +I 
Sbjct: 377 EPVEIGGVIVSSVSLINEDFIR-----------EKDIRIGDTVLVERAGDVIPYVVMVIK 425

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R  + +P  FP  CP C S +V+          A +RC   + C AQ +ERL HF S+
Sbjct: 426 EARTGNEKPIEFPKTCPSCGSPIVKPPGE------AVYRCV-NINCPAQVIERLIHFASK 478

Query: 479 DAF 481
           DA 
Sbjct: 479 DAM 481


>gi|229819870|ref|YP_002881396.1| DNA ligase, NAD-dependent [Beutenbergia cavernae DSM 12333]
 gi|229565783|gb|ACQ79634.1| DNA ligase, NAD-dependent [Beutenbergia cavernae DSM 12333]
          Length = 782

 Score =  296 bits (759), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 228/779 (29%), Positives = 365/779 (46%), Gaps = 110/779 (14%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A    + L Q+++     YY    P + D+ +DAL    +A+  + P+L     P+ P 
Sbjct: 23  EAAHRWAELAQQVNDARFAYYVKDAPTLSDAAFDALLHELEALEESHPEL---RVPDSPT 79

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG  +     V H    LSL+  ++ E +  +  R+ R         + +  E KID
Sbjct: 80  QQVGGTFSTEFTAVEHVERMLSLDNAFSAEGVESWAQRVERDLDAAA-AGLHYLCELKID 138

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVY 192
           G  I + YE G+ V AA RGDG +GEDV+  +R I +IP VL   + + P  IE+RGEV+
Sbjct: 139 GLAIALLYEGGRLVRAATRGDGRTGEDVTLNVRTIASIPHVLGGDAASHPARIEIRGEVF 198

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG------- 244
           +    F ALN   +  G+ P+ANPRNAA+G LR+ +P     R L  + HG+G       
Sbjct: 199 LPVEAFEALNSSQVEAGKSPFANPRNAAAGSLRQKDPRVTARRALGMYAHGIGALDWGDA 258

Query: 245 -KTSEIFAKGQ-YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDI 299
            + S I  + Q YE+L      G P +   R  +   G+   ++YY E    R  + ++I
Sbjct: 259 PEASSITRQSQVYELLSSW---GVPTSPHTRVVDDLAGVQEMIAYYGEH---RHDVEHEI 312

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KVDE +LQ++LG  +R+PRW I++K+  ++ +TRLLDI + +GRTG +TP   +E
Sbjct: 313 DGVVVKVDEVALQRRLGATSRAPRWAIAYKYPPEEVNTRLLDIRVSVGRTGRVTPYGVME 372

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV- 418
           PV + G+ +  ATLHN   +K         R G  + +GD V++++AG+VIP++V  +V 
Sbjct: 373 PVVVAGSTVEAATLHNASEVK---------RKG--VLIGDTVVLRKAGDVIPEIVGPVVA 421

Query: 419 --NERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHF 475
               R  + + F  P  CP C +     L P K G +    RC    +C AQ  ER+   
Sbjct: 422 LREGRESELREFVMPDVCPSCGT----PLAPAKEGDVDI--RCPNARSCPAQLSERVSAL 475

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF------------TLQRRQQTSTTK 523
             R  F+IE LG +         DP     + A ++             L  RQ      
Sbjct: 476 GGRGGFDIEALGWEAATAL---TDPERGRPVDASVYRPGADLTAEAPAALPDRQAPVLAT 532

Query: 524 IENI--LGFGDVSVTNLYDSINKRRNISL----ERFIFSLGIRHVGA------------- 564
              +  L   DV+   ++  I ++   +       F F+ G   V               
Sbjct: 533 EAGLFELTPDDVANVRVWREIKRKGEATGFWEDRPFFFTKGTAKVPPKPTQTTQVLFDQL 592

Query: 565 EIARSLAKYYL------------SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           E+A++   + +            + +  AQ   +I A +      L     VG  IA A+
Sbjct: 593 ELAKTRPLWRVLVALSIRHVGPTAARALAQRFGSIDAIDAASEEELAAADGVGPTIAAAV 652

Query: 613 VEFYQNP-----------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            E+  +P           R   A    + +        +++V   +E   +V TG+L++ 
Sbjct: 653 KEWLGDPEAPDNWRREIVRRWAAAGVRMAD------ERDESVPRTLEGLTVVVTGSLERF 706

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R  A+E V   G   +  +S+ TD ++VG+N GSK  KA++LG  I++E  F  LL +
Sbjct: 707 TRDGAKEAVLARGGKAAGSVSKSTDFVVVGENAGSKETKARELGRPILDEAGFERLLAE 765


>gi|325278944|ref|YP_004251486.1| DNA ligase [Odoribacter splanchnicus DSM 20712]
 gi|324310753|gb|ADY31306.1| DNA ligase [Odoribacter splanchnicus DSM 20712]
          Length = 829

 Score =  296 bits (758), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 187/574 (32%), Positives = 301/574 (52%), Gaps = 49/574 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + + YH+  YY  + P I D E+D L    + +   +P++    DPN P  ++G ++N
Sbjct: 11  LRKALEYHNYKYYIENAPEISDREFDGLMHDLEKLEEKYPEMY---DPNSPTQRVGRDIN 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               +V H  P LSL   ++ E+LR F  R+    +K   + + +  E K DGT I++ Y
Sbjct: 68  QEFTQVAHKYPMLSLGNTYSEEELRDFDQRV----RKVVGDRVQYVCELKYDGTSISLTY 123

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G+   A  RGDG  G+DV+A +R I T+P  L  + P   E+RGE+ +  + F  LN 
Sbjct: 124 VNGELTQAVTRGDGVKGDDVTANVRTIRTVPLKLRGDYPPEFEIRGEILMPFSVFNRLNQ 183

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-GKTSEIFAKGQYEMLQKM 261
           E    G   +ANPRNAA+G L+  N + +  R+L+ F++ + G+ +   A+  Y  L K 
Sbjct: 184 EKAEAGEPLFANPRNAAAGTLKLQNSSLVAKRHLDCFLYYIPGEVTP--AETHYGNLMKA 241

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           +  GF +   +  A++F  + ++  +    R+ LP  IDG+V KV++  +Q  LG  A+S
Sbjct: 242 KEWGFHMPPYIHLADSFEEVWAFITKWDKERTGLPVPIDGIVIKVNDIGMQHLLGYTAKS 301

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF  +Q  T L+D+  Q+GRTG +TPVA LEPV+I G  +  A+LHN D I  
Sbjct: 302 PRWAIAYKFKAEQVETPLIDVVYQVGRTGAVTPVANLEPVHIAGTTVKRASLHNADIISS 361

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
           L           D+   D V V++ GE+IPK+V +   +R   A    F + CP C +++
Sbjct: 362 L-----------DLHEHDTVYVEKGGEIIPKIVGVDRAKRREGAAAVEFITCCPECGTKL 410

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           +R          A H C     C  Q   +++HFVSR A NIEG+G++ ++         
Sbjct: 411 IRIEGE------ANHYCPNEDHCPPQIAGKIEHFVSRKAMNIEGMGEETIELLLGKR--- 461

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI--FSLGI 559
             IR  ADI+ L         K E ++G   +    +Y    +  +I L + I  F +GI
Sbjct: 462 -LIRDVADIYGL-------PAKREELIGLEKI----VYPESFEMTSIPLAKVIYGFEIGI 509

Query: 560 RHVGAEIARSLAKYYLSYQNFA----QEINNIIA 589
           +++ +  A +LA ++ S + +A    QE++ +I 
Sbjct: 510 KNISSRNAETLAGHFGSLEAYAAASKQELSAVIG 543



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 13/187 (6%)

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           SV NL   I K +       + +LGIR++G   +R+LAK +       +E+  ++     
Sbjct: 655 SVDNLIAGIEKSKTAGFPALLNALGIRYIGETASRNLAKSF-------RELTRLM---EA 704

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKL 652
           D+  L  V  +G+ +A +I+ ++    N   V+ L+   V   IG  E    S +  +  
Sbjct: 705 DFEQLTEVEDIGEQMANSILRYFGKEENRQLVKRLIDYGVEAEIGETETGNDS-LTGQTF 763

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL +  R   +E +   G  VS  +S KT  ++ G+N GSKL+KA++LG +I++EE
Sbjct: 764 VITGTLTR-PREYFKELILNAGGKVSDSVSAKTAYLLAGENAGSKLKKAEKLGTRIISEE 822

Query: 713 QFLFLLQ 719
           +F  LL+
Sbjct: 823 EFYELLK 829


>gi|4235376|gb|AAD13191.1| NAD-dependent DNA ligase [Thermus filiformis]
          Length = 546

 Score =  296 bits (758), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 181/510 (35%), Positives = 279/510 (54%), Gaps = 44/510 (8%)

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G       F+ V H     SL+  +  E++  F  R+ R   +K      +T+
Sbjct: 1   DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLDRALGRK--RPFLYTV 58

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGD             IPTIPR L   +P+ +EVRGE
Sbjct: 59  EHKVDGLSVNLYYEEGVLVFGATRGDXXXXXXXXXXXXTIPTIPRRLK-GVPDRLEVRGE 117

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P    +      F+  GLG   
Sbjct: 118 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLG-LE 176

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E   K QYE+L  ++  GFPV +G  +A    G+   Y      R  LP++ DG+V K+D
Sbjct: 177 ESGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYQAXXXKRHALPFEADGVVVKMD 236

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +L  +LG  AR+PR+ I++KF  ++  TRLLD+D Q+GRTG +TPV  LEPV + G+ 
Sbjct: 237 DLTLWGELGYTARAPRFAIAYKFPAEENETRLLDVDFQVGRTGRVTPVGILEPVFLEGSE 296

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  + +P
Sbjct: 297 VSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERP 345

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             +P  CP C  R++     K GK+   HRC   L C A++ E ++HF SR A +I+GLG
Sbjct: 346 IRWPETCPECGHRLL-----KEGKV---HRCPNPL-CPAKRFEAIRHFPSRKAMDIQGLG 396

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINK 544
           ++ ++   +       ++  AD++ L++         E+++G    G+ S  NL   I +
Sbjct: 397 EKLIERLLEK----GLVKDVADLYRLRK---------EDLVGLERMGEKSAQNLLRQIEE 443

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYY 574
            +   LER +++LG+  VG  +AR+LA  +
Sbjct: 444 SKRRGLERLLYALGLPGVGEVLARNLAARF 473


>gi|302337851|ref|YP_003803057.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293]
 gi|301635036|gb|ADK80463.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293]
          Length = 703

 Score =  296 bits (758), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 222/741 (29%), Positives = 358/741 (48%), Gaps = 102/741 (13%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A +E+  L   +  ++  YY   KP + D+EYD L  R   +   +P+L R + P   
Sbjct: 10  EKATEEVRRLADLLFRYNRAYYIEGKPEVSDTEYDRLFLRLQELEEQWPELKREDSPT-- 67

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G +++    +V H +P LSL+K +++E+L  ++ R       ++ + + F +E KI
Sbjct: 68  -LRVGSDLSSDFPEVEHRVPVLSLDKAYSVEELLGWMGRT----SGREASGLSFVVEEKI 122

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y  G    A  RG+G+ G DV+  +R I ++P  L+  +   I VRGE+Y+ 
Sbjct: 123 DGVSIVLYYRGGILERAVTRGNGYVGNDVTDNVRTIGSVPLRLTEAVD--IAVRGEIYLP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-------PTDITRYLNFFVHGLGKTS 247
           K  F +LN +M  +    Y NPRN A+G LRR+        P  I  Y  FF  G     
Sbjct: 181 KASFESLNRKMGNL----YVNPRNLAAGTLRRVKSREVAEVPLTIFVYEGFFSDG----- 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGV------------------RQANTFHGIVSYYNEMK 289
               K   E+L+ ++ LGF  N  V                   Q+ T+  +  Y     
Sbjct: 232 ---PKSHLEILEYLQSLGFRTNRRVGIFTNRTDLADFSRRHPDWQSGTWDELEGYVRTST 288

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R +L Y+IDGLV K++E  ++ +LG     PRW I++KF     ++ +  IDIQ+GRT
Sbjct: 289 EERGSLDYEIDGLVVKINELDVRDRLGYTGHHPRWAIAYKFESPTGTSIIKSIDIQVGRT 348

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVAR+EPV +GG+ I+N TLHN+DY+  L           +I VGD+V + R G+V
Sbjct: 349 GRITPVARVEPVFVGGSTISNVTLHNQDYVDML-----------EIAVGDQVSISRRGDV 397

Query: 410 IPKVVDIIVNERHPDAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           IP V +++   ++    P ++ P  CP C S + +           AH     L+C  Q 
Sbjct: 398 IPAVEEVVA--KNESGNPVWNMPLLCPSCGSSLQKK---------GAHTFCLNLSCPDQV 446

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
             RL  F++    +I+GLG + +D   +     F +  PAD++             E +L
Sbjct: 447 RGRLFFFIAAGQMDIDGLGPETVDLMIRE---GF-VSEPADLYRFD---------YERLL 493

Query: 529 ---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
              GFG+  +  +   + K         + S+GI  +G ++   L           + I 
Sbjct: 494 PYPGFGEKKIEAIRRGLEKSLTRPFHTVLASVGIPEMGKKVIELLISAGFRSM---KAIY 550

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
            ++   N D  +LI V  +G+     I E         AV   + E++      E+    
Sbjct: 551 ALVDQKNRD--ALIAVKGIGEKTVDTIFEELGRE----AVRKRINELAEVGLAMEEEEKL 604

Query: 646 EIENKKLVF-------TGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
            I +++L+F       TG+ Q    R KA E V++ G  V + +S KT  ++ G+  GSK
Sbjct: 605 SIASEQLIFAGQSWCVTGSFQHFNPRGKAMELVSRFGGSVVSSVSGKTSHLLAGEGGGSK 664

Query: 698 LEKAQQLGVKIMNEEQFLFLL 718
           L KA+ LGV++++EE+FL LL
Sbjct: 665 LTKARSLGVEVLSEEEFLDLL 685


>gi|218249478|ref|YP_002375058.1| DNA ligase, NAD-dependent [Borrelia burgdorferi ZS7]
 gi|254781261|sp|B7J2B3|DNLJ_BORBZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218164666|gb|ACK74727.1| DNA ligase, NAD-dependent [Borrelia burgdorferi ZS7]
          Length = 660

 Score =  296 bits (758), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 208/708 (29%), Positives = 355/708 (50%), Gaps = 67/708 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++  + LN F++        F    
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADIIKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP  V++++N+       F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T          K+    GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+E + +       +    +E  ++EV    G ++      +  KK   TGT     R  
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
             + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E 
Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654


>gi|325479535|gb|EGC82631.1| DNA ligase (NAD+) [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 669

 Score =  296 bits (758), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 200/710 (28%), Positives = 352/710 (49%), Gaps = 58/710 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E++ L +EI+  +  YY   +P++ D EYD +  R         D +   + N P  K
Sbjct: 4   REEINQLIEEINRLNYHYYTLDEPLVSDGEYDEIYDRL----VKLEDKSGYINENSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKDDN--SIFFTLE 131
           +GGE+     K  H    LS +K    + L  +I R  R    +    DD    + F +E
Sbjct: 60  VGGEVLEKFEKHFHITKLLSQDKAQTYDKLEDWINRANRLRRDYNNSHDDQLEKLTFIME 119

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + Y+ G  V AA RG+G  GE++SA +  I +IP+   +    ++E++GE 
Sbjct: 120 YKFDGLTVNLTYDDGALVNAATRGNGTVGEEISAQVNTIKSIPK--RIEEKSLLEIQGEA 177

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            +  ++    N+           N RNAA+G LR LNP +   R L  + + +  T+ + 
Sbjct: 178 LMPLSELKKYNEN----NEVQLKNARNAAAGALRNLNPKETAKRNLTAYFYSI-PTNNLD 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K + EML+ ++  G   +   ++ N    I++    +K  R+TL    DG+V K+++  
Sbjct: 233 FKSEEEMLEFLKKQGLQTHPYHKKVNNLDDIIAELERIKEERTTLDILTDGVVIKINDKK 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG   + PRW I++K+  ++ +T L ++   +GRTG +TP A LEPV+  G  +T 
Sbjct: 293 TQEVLGTTNKFPRWSIAYKYEAEEFTTTLKEVVWNVGRTGKVTPSAILEPVDFSGVTVTR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N D          ++R  + +++G +V ++R+ +VIP+++  +V+E  P       
Sbjct: 353 ATLNNYD---------DILR--KKVKIGSKVFIRRSNDVIPEILG-VVDEDQPGTLEIEK 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S ++       G +     C   ++C  Q L +++HF SR+A +IEGL ++ 
Sbjct: 401 PKHCPYCGSELIE------GNVHII--CPNSISCKPQLLAKMEHFASRNAMDIEGLSEKT 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +         A  I    DI+ L      +   + N+  FGD    NL ++I   + + L
Sbjct: 453 ISQLM----DALDINEIDDIYDL------TYDMLINLDRFGDKKTNNLLNAIEASKKVDL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             FI+++GI +VG   +R LA  + S+    Q               L+ V  +G+I AQ
Sbjct: 503 NNFIYAIGIPNVGERTSRDLANKFKSFDRLRQAKEE----------ELVDVEDIGEITAQ 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I+E++ +P    +++ LL++        E N S+ +E+   V TGT++  +R   +  +
Sbjct: 553 NIIEYFNDPNIKRSIDILLEKGIEISNPKEDNKSNGLEDMTFVITGTIENYKRDDIKNLI 612

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +    V+  +S+ TD ++ GD  GSK +KA  LG++I   ++    L++
Sbjct: 613 EKNAGKVTGSVSKNTDYVLCGDKAGSKKDKALNLGIEIYEGDKLYEFLEK 662


>gi|224534829|ref|ZP_03675401.1| DNA ligase, NAD-dependent [Borrelia spielmanii A14S]
 gi|224514077|gb|EEF84399.1| DNA ligase, NAD-dependent [Borrelia spielmanii A14S]
          Length = 660

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 210/704 (29%), Positives = 353/704 (50%), Gaps = 61/704 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E+++L++ I   D  YY  S P + D  YD    R   +   +P+    + P    
Sbjct: 4   KIQQEIANLKKLIRKWDKEYYVDSLPSVEDFVYDEHILRLQELESKYPEYKTLDSPTL-- 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++  +  +V HSIP LSL+K++++  L+ +I +I        +NS   ++EPKID
Sbjct: 62  -KFGSDLLNTFKEVEHSIPILSLDKVYDLNLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  IR I  IP  L   +  ++  RGEVYI+K
Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPFFLDEKVDLVL--RGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            +F  +N  +     KPY N RN ASGILRR++  ++  + LN F++        F    
Sbjct: 173 ENFFKINKFL----EKPYTNSRNLASGILRRVDSKEVANFPLNVFIYDFLNAGLEFKTNN 228

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               +K++ LGF VN  +R   Q ++   +++Y  ++   R++  Y+IDG+V KV +F+L
Sbjct: 229 LAT-EKLKKLGFQVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG     P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA ITNA
Sbjct: 288 RERLGYTLHHPKWAMAYKFESLSGLSRVNSIIVQVGRSGKITPVANIDKVFVSGAFITNA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  +           ++ VGD V V R G+VIP  V++++N+       F   
Sbjct: 348 TLHNQDYIMSI-----------NLNVGDIVKVSRRGDVIP-AVEMVINKFSTGF--FKIL 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C+  +V++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKMALVKE---------GAHFFCTNNNCPSVVVERIKYFCSKNCMDIEGFSDKTI 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F  E    S  I   IF           K+    GF +  V NL +SI   +     
Sbjct: 445 SFLF--EKKFISSEIDLYIFDFY--------KLLKFKGFKERKVNNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +    +  + +L+++  +G+ IA  
Sbjct: 495 KLLLSIGIKELGENTIRLL---FLNNFNSFSKLFKLCQDRDFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           I+  + +   I      E L  ++   +   +KN    +  KK   TG+     R    +
Sbjct: 552 IIGAFNDSIMINKFKFFENLGFKMEECVLIDDKN--KLLLGKKFCITGSFGDYSRSIVID 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            +   GA+    ++R  D +IVG   G+KL+KA  L +KIM+ E
Sbjct: 610 KLENKGAIFQTCVTRSLDFLIVGKKAGTKLKKALNLNIKIMSFE 653


>gi|255023537|ref|ZP_05295523.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-208]
          Length = 419

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 174/445 (39%), Positives = 250/445 (56%), Gaps = 33/445 (7%)

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
            A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F  LN+     G+
Sbjct: 1   GATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSFQKLNEIREEEGQ 58

Query: 211 KPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
             +ANPRNAA+G LR+L+ T I  +R L+ F++ +    E+  +     L  +  LG  V
Sbjct: 59  MLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLETLGLKV 117

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
           N   R  N+   + +Y +E    R+ L YDIDG+V K++    Q+Q+G   +SPRW I++
Sbjct: 118 NKERRLCNSLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGTTVKSPRWSIAY 177

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNED I         
Sbjct: 178 KFPAEEVPTKLLDIELNVGRTGVVTPTAVLEPVRVAGTTVSRASLHNEDLIT-------- 229

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
               +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP C S +VR L  +
Sbjct: 230 ---EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEKPFHMPKNCPTCDSELVR-LEEE 285

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
                 A RC     C AQ  E L HFVSR+A NI+GLG++ +   F        I+  A
Sbjct: 286 V-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQH----LIKDVA 335

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D+F L      S  K+  +   G+ SVTNL  SI   +  SLE+ +F LGIRHVGA+ A+
Sbjct: 336 DLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAK 389

Query: 569 SLAKYYLSYQNFAQEINNIIAHNND 593
           SLA ++ +  N        +   ND
Sbjct: 390 SLAIHFDTMDNLKVADKETLTSIND 414


>gi|15828860|ref|NP_326220.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Mycoplasma
           pulmonis UAB CTIP]
 gi|81532955|sp|Q98QH2|DNLJ_MYCPU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|14089803|emb|CAC13562.1| DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) [Mycoplasma
           pulmonis]
          Length = 679

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 210/701 (29%), Positives = 366/701 (52%), Gaps = 55/701 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD----LARSEDPNGPLNKIG 79
           L +++  ++  YY  ++ ++ D  YDA     + I   FP+    + + +     L K+ 
Sbjct: 15  LNEKLKLYNHHYYNKNESLVSDEYYDAKLLELENIRDNFPEEYNQVFQKDFSKSVLEKVN 74

Query: 80  --GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
              E ++ L K  H    LSL K ++ EDL ++  RI  F      N+  + L+ KIDG 
Sbjct: 75  HLDEQDVKLKKEKHQKLMLSLNKAYSFEDLERYTNRINTFV----GNNHQYILQEKIDGV 130

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G    A  RGDG  GE+V+     I  IP+  ++NI E IE+RGE++ S   
Sbjct: 131 SISLYYENGILTKALTRGDGIYGENVTHNALNIKDIPK--TINIKENIELRGEIFFSLKL 188

Query: 198 FLALNDEMI----AVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
           F +L +E +        K +  PRN ASGIL+ L  TD + +L+ F++ +        K 
Sbjct: 189 FESLKNEFLDKQDGTKNKKWNTPRNKASGILKSLKTTDESSWLSCFIYEVVSPENFNLKT 248

Query: 254 QYEMLQKMRCLGF--PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           Q ++   ++  GF  P    +   N     ++ +      R    Y+IDGLV K+++ SL
Sbjct: 249 QKQLFDFLKIQGFNLPKFEFIENENLIENFITNFKFEDDQRD---YEIDGLVIKLNDLSL 305

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
              LG+ ++     I++KF +K   T++ DI + +GRTG++T  A+L+ V + G+ I  A
Sbjct: 306 YDLLGKTSKFFHHSIAYKFRKKFVMTKIEDIFVTVGRTGLITYNAKLQEVVLNGSKIKAA 365

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN +YIK +            I +GD+V +++AGE+IP+VV ++  +   D   FS  
Sbjct: 366 TLHNYEYIKNI-----------KINIGDKVYIEKAGEIIPRVVKLVSPKN--DQNYFSPI 412

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            FCP C++++    N      +    C     C  +++++LK+FVS+D   I+ LG +++
Sbjct: 413 EFCPSCKNKLSWSEN------MLNQFCLNP-DCIEKKIQKLKYFVSKDGMEIQELGGKKI 465

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + FF        ++   DI+ L +       K+EN   F + SV  L   I + +++   
Sbjct: 466 ELFF----AKGWVKKIEDIYNL-KNNYDDLLKLEN---FQEHSVNVLLHKIEESKDVYTW 517

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + I +LGI+++G ++A+SL K  + ++N  + + +++  N D+   L +    G +  ++
Sbjct: 518 KLIAALGIKNIGKKLAKSLVK--IIFENDQKNLLSLLEFNYDE---LEKYDEFGSVKIES 572

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + EF+ N  N   ++ L +         E   S+++ENK  + TGTL+K  R   +  + 
Sbjct: 573 LKEFFANDENRNLIQFLDQNGFELKMEKEIIQSTKLENKTFLITGTLEK-PRDFYKNLII 631

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           Q G ++S+ +S+K D +IVG NPGSK +KA +L +KI++EE
Sbjct: 632 QNGGIISSSISKKLDYLIVGQNPGSKEKKAMELNIKIIDEE 672


>gi|313904335|ref|ZP_07837713.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6]
 gi|313470885|gb|EFR66209.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6]
          Length = 670

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 209/717 (29%), Positives = 354/717 (49%), Gaps = 69/717 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E + L+++I YH D YY   +P I D EYD L           PD      P+ P  KI
Sbjct: 4   EEYNRLKEKIDYHMDRYYNLDEPEISDYEYDQLMIALKKAEKEHPDWI---SPDSPSQKI 60

Query: 79  GGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG        KVTH +P LS+E +++ E +  ++T++             F++E KIDG 
Sbjct: 61  GGTAKREAGVKVTHRVPMLSIEDVFDKEAVTAWVTKVRDLHP-----DAVFSVETKIDGL 115

Query: 138 MITIRYEK------GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            +T+RYEK       K + A  RGDG  GEDV+     IP + + L L   + +E+RGEV
Sbjct: 116 SMTLRYEKVAGTDSMKLMLAETRGDGLVGEDVTLNALVIPDVQKTLKLPY-DYLEIRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
           Y++  DF   N+E   +G+K  ANPRN A+G LR+L+ + IT  R L  FV  +      
Sbjct: 175 YMTHEDFDRFNEEQERLGKKLAANPRNLAAGTLRQLDAS-ITKERGLRMFVFNVQDAPAE 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHG--IVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F       L  +   G      V   N  +   +++  +E+  +R+ LPYDIDG V K++
Sbjct: 234 FLADHSAALDALAACGVQT---VYHRNCVNATEVLAAIDEIAEMRADLPYDIDGAVVKIN 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL------EPV 361
           + + +      ++     I++K+  ++    + +I + +GRTG LT           +P 
Sbjct: 291 QTAYRNDFPAGSKYSSGHIAYKYPPEERVVEMDEIIVNVGRTGKLTFTGSFHDAETGKPA 350

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  ++ ATLHN+DYI  +            I VG    + ++GE+IPK+   +   +
Sbjct: 351 RLCGTSVSRATLHNQDYITEMS-----------IGVGGHYRLFKSGEIIPKLNGCV---K 396

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P+   F  P  CP+C   ++R+ +       A  RC    +C AQ    + +F SR+  
Sbjct: 397 EPETV-FVAPKTCPVCGHPLIREED------TADIRCVNP-SCPAQLSRTVAYFTSRNCM 448

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I GLG   ++   +       ++  ADI+ L+  +     K   I+G  + +   L D+
Sbjct: 449 DIAGLGDTLVEALIRE----GYLKNYADIYKLRAYRDEMVEK--GIIG-KEKNTDKLLDA 501

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I+  +  +  R + +LGIR+VG+  A+ L K+Y S +  ++               L+++
Sbjct: 502 IDASKKQNPARLLTALGIRNVGSSTAKELMKHYASIRELSKATAE----------ELVQL 551

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           P +G   A  IVEF+ +  N+  ++ L K     +   E+  S ++    +V TGTL  +
Sbjct: 552 PDIGSTTAGDIVEFFSDSENLRMIDELEKSGVNMVVEKEEGGSDKLAGMTIVVTGTLPTL 611

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A+E + + G   +  +S+KT +++ G+  GSKL KAQ+LG+K+++E + L ++
Sbjct: 612 GRSEAKELIEKNGGKCTGSVSKKTTLLVAGEAAGSKLTKAQELGIKVISEAELLAMI 668


>gi|168186072|ref|ZP_02620707.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
 gi|169295952|gb|EDS78085.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
          Length = 664

 Score =  294 bits (753), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 200/654 (30%), Positives = 337/654 (51%), Gaps = 58/654 (8%)

Query: 71  PNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKF------ITRIYRFWQKKDD 123
           P  P  ++G ++ LS F K TH     SL K  +++++  +      +   Y    +   
Sbjct: 54  PYSPTQRVG-DVVLSKFNKYTHKGKLWSLGKAQSLKEVEDWHNKNVKVVNEYNLTHEDKL 112

Query: 124 NSIFFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
             I + +  K DG  I   Y E G  V AA RG G  GE+++A  + I TIP  L ++  
Sbjct: 113 PPIKYIVTKKFDGLTINCTYNEDGILVTAATRGTGEIGEEITAQAKTIKTIP--LKMDNH 170

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241
            +IEV GE  ++K  F    +E   V   P  N RN A+G LR LN  +  R  L+ F +
Sbjct: 171 AVIEVHGEAIMTKEAF----EEYNKVAVVPLKNLRNGAAGALRNLNVKETARRNLSAFFY 226

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +G       K   EML+ ++  G P+++   Q +T   I    N ++ IR  L YDIDG
Sbjct: 227 DIGYNEGTPFKTYSEMLKFIKEHGIPMDDYAEQCSTVEEIEKEINYIEEIRDKLNYDIDG 286

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
            V  VD+   ++ LG   + P+W +++KF  ++A+T+LL+++  +GR+G +TP A LEPV
Sbjct: 287 AVIAVDDMRTRELLGYTVKFPKWALAYKFEAQEATTKLLEVEWNVGRSGRVTPTAILEPV 346

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            IGG  +  ATL+N D I+         R G  +++G  V ++R+ +VIP+++  +V E 
Sbjct: 347 EIGGVTVKRATLNNMDDIE---------RKG--VKLGSTVFLRRSNDVIPEIMG-VVEES 394

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDA 480
              A+    P+ CP C S +V++           H  C   L+C  Q ++ + HF SR+A
Sbjct: 395 LEGAKDIKSPTTCPYCGSEIVQE---------GVHYFCENTLSCKPQLVKSIVHFGSREA 445

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NI G  ++  +  F+  D    I+  +D++ +++       +      FG+    NL D
Sbjct: 446 MNIAGFSEKTAEQLFEELD----IKSISDLYRIKKEDLLKLNR------FGEKKAQNLID 495

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   ++  L  FI++LGI +VG + +  L K + +  N  +               L+ 
Sbjct: 496 AIENSKDCDLPSFIYALGIPNVGKKTSTDLCKKFKTLDNLKEA----------KIEELVS 545

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           V  +GDI+AQ++++F+ +   + +++ LL        + E+   +    K +V TG+L  
Sbjct: 546 VEDIGDIVAQSVLDFFNDDTILKSIDELLSLGVIPKFKEEEIEENIFNGKTVVVTGSLSS 605

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             R++ +E +  LGA V+  +S+KTD ++VG +PGSK EKA QL +KI++E++F
Sbjct: 606 FSRNEIKEKLQSLGAKVAGSVSKKTDYVLVGKDPGSKYEKAVQLNIKIISEDEF 659


>gi|293188969|ref|ZP_06607703.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309]
 gi|292822104|gb|EFF81029.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309]
          Length = 777

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 172/487 (35%), Positives = 265/487 (54%), Gaps = 27/487 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+   + E  R   + L   I+     YY    P + D++YD + R  + I   +P L R
Sbjct: 3   PMADSTFETTRDRYNDLVDRINDARAAYYDRDSPTLADADYDRMYREVEQIEERYPQL-R 61

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S D   P   +GG ++    +V H    +SL+ ++++E+L  + TR+       D   + 
Sbjct: 62  SAD--SPTMSVGGSVDSGFSEVRHLAQMMSLDDVFSLEELAAWETRMAEATGISD---LE 116

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            T E K+DG  I + YE G+ V AA RGDG+ GEDV+A  R I +IP+ L+  +P  IEV
Sbjct: 117 MTTEVKVDGLSINLLYENGRLVRAATRGDGYVGEDVTANARTIASIPQTLTGTVPARIEV 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-- 244
           RGEVY    DF A N+  +  G K + N RNAASG LR+ +PT+   R L+   HG+G  
Sbjct: 177 RGEVYFPVADFAAFNEARVEAGEKTFVNARNAASGSLRQKDPTETAKRPLSMVAHGIGFV 236

Query: 245 KTSEIFAKGQYEM--LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +  E F +   +M   +++R  G PV+   R       I     E+   R  L ++IDG+
Sbjct: 237 EVGEDFTEPTTQMGWYEQLRDWGLPVSPYTRMLTGRKAIEERIAELGEKRHDLEHEIDGV 296

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K+++  LQ+ LG  +R+PRW  ++KF  ++  TRLLDI +Q+GRTG +TP   +E V 
Sbjct: 297 VVKINDLDLQRSLGSTSRTPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMESVL 356

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ +  ATLHN         + +V R G  + +GD V++++AG+VIP++V  + + R+
Sbjct: 357 VAGSNVARATLHN---------AQEVARKG--VLIGDLVVLRKAGDVIPEIVAPVEDARN 405

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              +PF  P  CP C + +V++   K G +    RC     C AQ  ERL H  +R A +
Sbjct: 406 GSERPFVMPKQCPSCGTTLVQE---KEGDV--DLRCPNKGLCPAQITERLAHVGARSALD 460

Query: 483 IEGLGKQ 489
           +EGLG +
Sbjct: 461 VEGLGDE 467



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 89/179 (49%), Gaps = 12/179 (6%)

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIR 600
           + K ++  L R + +L IRHVG   AR+LA+ +LS     A  +  + A           
Sbjct: 602 LEKAKSQPLARVLVALSIRHVGPTAARALAEKFLSMDALRAASVEELSA----------- 650

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           V  VG+ I +++ +++    ++  ++A  +          +  S  +    +V +G +  
Sbjct: 651 VEGVGEEIGRSLRDWFTVDWHLEVLQAWARAGVRMADEAPEPTSDVLAGLTIVVSGAMPG 710

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             R  A+E +T  G   +  +S+KT +++ G   GSK +KA++LGV ++ E+QF  LL+
Sbjct: 711 YDREGAKEAITSRGGKAAGSVSKKTSLVVAGPGAGSKEKKAKELGVPVITEQQFADLLE 769


>gi|315124105|ref|YP_004066109.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017827|gb|ADT65920.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 561

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 289/540 (53%), Gaps = 49/540 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYD L R        F +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDVLIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L+++W++ED+  F     R W K+      F +EPK DG  + + YE GK V  A 
Sbjct: 74  ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++   E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  G+G+ +  F K   +++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSDVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           ++       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG   + P++M + KF 
Sbjct: 244 IKLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             D+++ D V V R+G+VIPK+  +    R       S P  CP CQS ++ +     G 
Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           L+        + C  + +  + HFVS+   NI+GLG+  ++  +K +           I 
Sbjct: 408 LIKCQ----NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+       +  E + GF +  + NL ++I + R   L RFI +LGI H+G   A+ L+
Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513


>gi|115379272|ref|ZP_01466385.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
 gi|115363713|gb|EAU62835.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 443

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 160/425 (37%), Positives = 246/425 (57%), Gaps = 30/425 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  + ++ A      L +E+++H+  YY    P + D+EYD L R    +   FP LA  
Sbjct: 40  LPPVDLKTAETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPALA-- 97

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  ++GGE      KV H  P LSL  ++N E+  +F  RI +     D   + +
Sbjct: 98  -TPDSPTQRVGGEAAEKFAKVVHRAPMLSLANVFNDEEFTEFDERIRKVVGPAD---VTY 153

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEI 184
             EPK+DG  IT+RYE G+F+  A RGDG +GEDV+  +R +  +P  L     + +P +
Sbjct: 154 VCEPKLDGLAITLRYENGRFLQGATRGDGTTGEDVTGNLRTVRPLPLELLPEAGMAVPPV 213

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGEV+I K DF  LN++    G   +ANPRNAA+G LR+L+P    +R L+  ++ +
Sbjct: 214 LEVRGEVFIRKEDFKKLNEKREEEGEALFANPRNAAAGSLRQLDPKITASRPLSVSLYEI 273

Query: 244 GKTSEIFA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
             T  + A      + E LQK   LG PVN+  R A    G+ + Y      R  L +++
Sbjct: 274 VPTEGVPAFDTHTAKLEYLQK---LGLPVNHHER-AQGLEGVRAAYQAALKGRHALKFEV 329

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KVD    +++LG+ ++SPRW +++KF  ++ STR+  I++Q+GRTG LTPVA L+
Sbjct: 330 DGMVVKVDSEDQRRRLGQVSKSPRWAVAYKFPPEEESTRVEAIEVQVGRTGALTPVAHLK 389

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  ++ ATLHNED ++            +D+R GD V V+RAG+VIP++V ++ N
Sbjct: 390 PVKVGGVTVSRATLHNEDELR-----------RKDVRQGDTVFVRRAGDVIPEIVSVVPN 438

Query: 420 ERHPD 424
           +R  D
Sbjct: 439 QRPAD 443


>gi|187918415|ref|YP_001883978.1| NAD-dependent DNA ligase LigA [Borrelia hermsii DAH]
 gi|254781263|sp|B2S0Q2|DNLJ_BORHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119861263|gb|AAX17058.1| NAD-dependent DNA ligase [Borrelia hermsii DAH]
          Length = 669

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 208/703 (29%), Positives = 352/703 (50%), Gaps = 59/703 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE    E+  L+  I   +  YY  S P + D  YD    R   +   +P+    + P  
Sbjct: 2   IEDVEDEILRLKNIIKRWNREYYVDSSPSVGDLTYDKALLRLQDLESKYPEYKTLDSPTF 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              + G ++     +V HS P LSL+K ++I+ L  +I ++              ++EPK
Sbjct: 62  ---RFGSDLLNDFEEVKHSFPILSLDKTYDIKGLSLWIEKMV-LESAISGLHTGISVEPK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEV 191
           IDG  I + Y+ G    A  RGDG  G DV+  ++ I  +P    L I E IE+  RGE+
Sbjct: 118 IDGCSIVLHYKDGILEKALTRGDGRVGNDVTENVKTIRNVP----LRIDEKIELVLRGEI 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
           YI+K +FL +N  +    + PY N RN ASGILRR++  ++  + L+ FV+ +  +S + 
Sbjct: 174 YITKENFLKINRTL----KNPYVNARNLASGILRRISSKEVANFPLDIFVYDILYSS-LK 228

Query: 251 AKGQYEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               ++   K++  GF VN         N   GI+++  +++++R +  Y+IDG+V K+D
Sbjct: 229 LNTSHDAFDKLKQFGFKVNPFCEFFGGKNLEAGIIAHVKKIEALRDSFEYEIDGVVLKID 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F L+K LG  +  P+W I++KF      ++++DI +Q+GR+G +TPVA +E V + GA 
Sbjct: 289 SFILRKILGSTSHHPKWSIAYKFESCTGMSKVVDIVVQVGRSGKITPVAHVEKVLVAGAS 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ITNA+LHN+DYI   D  G        + VGD V++ R G+VIP  VD+++ +       
Sbjct: 349 ITNASLHNQDYI---DFVG--------LNVGDIVVISRRGDVIP-AVDLVIEKLA--VGS 394

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  PS CP C+  ++++          AH       CS + +E++K+F S+   NI GL 
Sbjct: 395 FKIPSNCPSCKMTLIKE---------GAHLFCVNRHCSCRIIEQVKYFCSKKCMNIVGLS 445

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++F F+ +     I    +++T       +  ++ N+ GF    + NL  SI   ++
Sbjct: 446 EKTIEFLFEKK----FISSEVELYTF------NCDRLINLKGFNLKRINNLKRSIEDSKS 495

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               + +  +GI+ +G      L    L   N    I+ +  +       L+++  +G+ 
Sbjct: 496 RPFRKLLLGMGIKDLGENTILVLINNNL---NSFDTISTLCKNKEAALAKLLKIKGIGER 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRH 664
           IA  I+E + N + I       KE+   +     N     S +  KK   TG+ +   R 
Sbjct: 553 IALNIIEAF-NDKTILDKFNFFKELGLKMEEDNTNDAVYDSFLFGKKFCITGSFKGYSRD 611

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
              E +T+ GAV S  +++  D ++VG+  G K++KA  LG+K
Sbjct: 612 VLIEKLTKKGAVFSRSVTKCLDFLLVGEKFGLKVQKANNLGIK 654


>gi|302670775|ref|YP_003830735.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316]
 gi|302395248|gb|ADL34153.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316]
          Length = 675

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 216/726 (29%), Positives = 352/726 (48%), Gaps = 77/726 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+ R    +L  EI +H D YY   +P I D EYD L  R   +   +P+L  ++ P+  
Sbjct: 6   EEIRNNYDALVSEIKHHMDLYYNQDEPEISDYEYDQLMIRLKKMESEYPELVSNDSPS-- 63

Query: 75  LNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              +GG        K+TH++P LS+E ++  E + +++T+++            F+ E K
Sbjct: 64  -QIVGGVAKREAGVKITHNVPMLSIEDVFTTEAVSEWVTKVHALHP-----GALFSAEIK 117

Query: 134 IDGTMITIRYEKG------KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           IDG  +++RY K           A  RGDG  GEDV+A    IP + RV+ L   + +E+
Sbjct: 118 IDGLSMSLRYRKSPEDDKLHLELAETRGDGLIGEDVTANALMIPDVKRVIDLPY-DYLEL 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGK 245
           RGEVY+S  +F   N+E    G+K  ANPRN A+G LR+L+PT ITR   L  FV  +  
Sbjct: 177 RGEVYMSHENFEKFNEEQEKSGKKIAANPRNLAAGTLRQLDPT-ITRDRGLRMFVFNIQD 235

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             +   +   + L+ +   G PV    +Q +    +++   E  ++R  L YD+DG V K
Sbjct: 236 GPQELMESHCKGLEILANAGVPVVFH-KQCSDTQEVIAAITEFGNMRENLEYDLDGAVIK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL------E 359
           VD  + +      ++     I++K+  ++    + +I + +GRTG LT           +
Sbjct: 295 VDHTAWRDDFPAGSKYSSGHIAYKYPPEERVVVMDEIIVDVGRTGKLTFTGSFHDRETGK 354

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           P  + G  ++ ATLHN+DYI  +            I +G    + ++GE+IPK+   +  
Sbjct: 355 PARLCGTSVSRATLHNQDYINEMQ-----------IGIGGEYKLFKSGEIIPKLNGCV-- 401

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            + P+   +  P  CP+C S +VR+ +       A  RC     C AQ    + +F SRD
Sbjct: 402 -KAPEIV-YKAPEHCPVCGSLLVREED------TADIRCINP-TCPAQVTRTIAYFTSRD 452

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN-L 538
           A NI GLG   +D           ++  ADI+TL R +     K   I+G   V  T+ L
Sbjct: 453 AMNIMGLGDTLVDALVSE----GYLKTYADIYTLGRHRDELIEK--GIIG--KVKNTDKL 504

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
              I K +     R +  L IR+VG   AR + K++       +                
Sbjct: 505 LGEIEKSKENDPVRLLTGLAIRNVGKSTAREIMKHFDDLMELTKVTRE----------GF 554

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----V 653
           +++P +G+  A  + EF+ +  N+  +E +      S+G + K V S   + KL     V
Sbjct: 555 LQIPDIGETTANDLYEFFHDEHNLQILEQM-----NSLGLNMKVVESNDSSDKLSGMTIV 609

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL  + R +A+E + + G   S  +S+KT +++ G+  GSKL KA  LG+K++NE +
Sbjct: 610 VTGTLPTLGRKEAEELIVKNGGKASGSVSKKTSLVLAGEAAGSKLTKANDLGIKVINEAE 669

Query: 714 FLFLLQ 719
           FL +++
Sbjct: 670 FLEMIK 675


>gi|183219642|ref|YP_001837638.1| DNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189909780|ref|YP_001961335.1| DNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|190359263|sp|B0SA75|DNLJ_LEPBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781356|sp|B0SKC1|DNLJ_LEPBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167774456|gb|ABZ92757.1| DNA ligase (NAD+) (contains BRCT domain type II) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778064|gb|ABZ96362.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 671

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 214/713 (30%), Positives = 357/713 (50%), Gaps = 62/713 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  +K + +L +EI  H+D YY+ + P+I D E+D L +    +    PDLA   D + P
Sbjct: 8   EDPKKRIITLRKEIGRHNDLYYKENAPVITDKEFDILVKELQKLESENPDLA---DVSSP 64

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G +++    K  H +P LSLE  +N  +L +        W +K      ++LE KI
Sbjct: 65  TAQVGSDLSPQFSKFKHKVPVLSLENTYNETELSE--------WLEKTGIEENYSLEWKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + YEKGK      RG G  G+ V+  ++ I TIP  LS  +   + VRGE++++
Sbjct: 117 DGASILLYYEKGKLTNCVTRGSGGIGDVVTENVKTISTIPHTLSEEMN--LTVRGEIFMT 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
             DF   N+E    G K +ANPRN A+G +++ +P D+  R L  +V+ +  +S    KG
Sbjct: 175 FADFEEFNEEY---GGK-FANPRNLAAGSIKQKDPLDVAKRPLRIYVYDVYFSSS--RKG 228

Query: 254 ---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                ++L  ++   FP+        T   ++      +  +  +P+ +DGLV K+D  +
Sbjct: 229 INTHKDILSLLKKEKFPLAPDTTIL-TGKKLLREIESFRKKKDKMPFPVDGLVIKLDSLN 287

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L++ LGE + SPRW  + KF      + + +ID  IGRTG +TP A++ P+++ G  +T 
Sbjct: 288 LRESLGETSHSPRWARAFKFDALLKESTIEEIDFAIGRTGKVTPRAKVTPISLAGTTVTY 347

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+DYI  L A            +G +VL+ + GE+IP V  +      P    F  
Sbjct: 348 ATLHNQDYINQLGAG-----------IGAKVLISKRGEIIPAVEKVTF----PPKTIFVL 392

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C +++ +  +           CT    C  ++L +L  F S+   NIEGLG++Q
Sbjct: 393 PNQCPSCNTKLTKVDDS------VDFFCT-NRHCPERKLNQLIFFCSKKQMNIEGLGERQ 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  FF   +  +   IP D++TL++ + T    +  + GFG+ SV  ++D+I K +    
Sbjct: 446 IQIFF---EKGWVKDIP-DLYTLEKYKPT----LLELDGFGEKSVKIIFDAIEKSKEKDF 497

Query: 551 ERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
              + S+G+  VG ++   L +  Y S+        +  A  N+D   L  +  +G    
Sbjct: 498 RFTLPSIGLNEVGPKVTEILIENGYDSWDKLLTLSKSKTA--NED---LKAIHGIGPRTI 552

Query: 610 QAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQ 667
           +A++   ++   +  V  L K  +       EK+       +    TG+ +  Q R  A 
Sbjct: 553 EALLTHLKDKETLKLVATLKKLGLKFQADETEKSDLQPFVGQSWCVTGSFENFQPRDLAM 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +T+ G      +S KT  ++ G   GSKL+KA +LGVK++ E +FL LL+Q
Sbjct: 613 DLITKHGGKKVTSVSSKTTHLLYGPGAGSKLDKATELGVKLVTESEFLDLLKQ 665


>gi|325972726|ref|YP_004248917.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy]
 gi|324027964|gb|ADY14723.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy]
          Length = 696

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 214/734 (29%), Positives = 368/734 (50%), Gaps = 85/734 (11%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ SL ++++ +   YY  ++P++ D EYD L  R  A+   +P L  ++ P     ++G
Sbjct: 7   EIHSLVEQLASYQKAYYVDNRPLVSDLEYDRLFDRLVALETQYPHLKLADSPT---QRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +++ +L +V H+IP LSL+K ++  ++  +I +     + K    +   +E KIDG  I
Sbjct: 64  SDLDSALVEVAHTIPVLSLDKAYSDGEMLSWIEKT----ELKIGEEVGIVIEEKIDGISI 119

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + YE G    A  RG+G  G DV+A ++ I +IP  L L + E + VRGE+Y+ K  F 
Sbjct: 120 VLYYEDGLLKRAVTRGNGMVGNDVTANVKTIASIP--LRLPVKESLAVRGEIYLPKETFA 177

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEML 258
            LN +M      P+ANPRN A+G +RR+  +++ +  L  FV+  G   E+      ++L
Sbjct: 178 KLNAQM----EVPFANPRNLAAGTIRRIKSSEVAKVPLQIFVYE-GFWKEVVHTDHLQIL 232

Query: 259 QKMRCLGFPVN----------NGVRQA----------NTFHGIVSYYNEMKSIRSTLPYD 298
             +   GF +N          +  RQA           +F  + SY  +    R++L Y+
Sbjct: 233 STLASYGFRLNPNLGYFAKDASQARQALMDAQLSGFGGSFSDLASYIQDHTQKRASLGYE 292

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDGLV KV+  S ++ LG     PRW +++KF   QA T +  ID+Q+GRTG +TPVAR+
Sbjct: 293 IDGLVAKVNSLSGREMLGYTGHHPRWAMAYKFESPQAQTVVQAIDVQVGRTGRVTPVARV 352

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV + G+ I+N TLHN+DYI  L           ++ +GD V + R G+VIP V  +I 
Sbjct: 353 VPVQVAGSTISNITLHNQDYINML-----------ELGLGDTVEISRRGDVIPAVERVI- 400

Query: 419 NERHPDAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            E++  +Q  +  P+ CPIC S         T +   AH     ++C AQ   R++ F+ 
Sbjct: 401 -EKNESSQGIYHMPTRCPICDS---------TLESRGAHTFCPNISCPAQIRGRIEFFIG 450

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           ++  +I+  G +         D  + ++   DI+ +  R+  S        GFG+  +  
Sbjct: 451 KEGMDIDNFGPETAAALI---DLGY-LKDIDDIYRIDYRKALSDQA-----GFGEKKIRL 501

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           +   + K +     + + +LG+     E+ +  A+  L+    + EI   IA N  D   
Sbjct: 502 IEGGVQKSKEQPFRKVLVALGL----PELGKKGAELLLANGITSMEILLDIA-NRGDVQR 556

Query: 598 LIRVPLVGDIIAQAIVEFYQNP---RNICAVEAL---LKEVSPSIGRHEKNVSSEIENKK 651
           L  +  +G+ IA+  +E    P   + I  + +L   + E    + + + + S ++    
Sbjct: 557 LTSIKQIGEKIARLYIEALCEPAMQQRIARLASLGLAMAEGEQQLQKLDDSFSGQV---- 612

Query: 652 LVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
              TG+ +    R  A + V + G    + ++ KT  ++ G+  GSKLE A+ L V++++
Sbjct: 613 WCVTGSFEHFNPRSLAMDEVVKRGGRTVSSVTSKTTHLLAGEGGGSKLETARSLKVQVVD 672

Query: 711 EEQFLFLL--QQYN 722
           E+ FL LL  +Q+N
Sbjct: 673 EQTFLTLLKSKQHN 686


>gi|330722364|gb|EGH00218.1| DNA ligase [gamma proteobacterium IMCC2047]
          Length = 394

 Score =  291 bits (745), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 165/420 (39%), Positives = 246/420 (58%), Gaps = 42/420 (10%)

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + Y+IDG+V+K++   LQ ++G  +R+PRW I++KF  ++  T+LL ++ Q+GRTG +TP
Sbjct: 1   MHYEIDGIVFKLNSLELQNKVGFVSRAPRWAIAYKFPAQEEITQLLGVEFQVGRTGAVTP 60

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG  ++NATLHN D I+ L            +R GD V+V+RAG+VIP+VV
Sbjct: 61  VARLQPVFVGGVTVSNATLHNGDEIERL-----------GVRCGDTVVVRRAGDVIPQVV 109

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            +++ +R  ++    FPS CP+C S V+R      G+ VA  RCTGGL C+AQ+ + +KH
Sbjct: 110 QVVLEKRPENSTAIEFPSSCPVCGSDVIR----AEGEAVA--RCTGGLYCAAQRKQAIKH 163

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F SR AF+IEGLG + +D     +     I   AD+F LQ         + N+   GD S
Sbjct: 164 FASRKAFDIEGLGDKLVDMLVDQQ----LINSIADLFHLQHE------ALSNLERMGDKS 213

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL D++ K +  +L RFI++LGIR VG   A +LA ++       Q     +   ND 
Sbjct: 214 AQNLLDALQKSKQTTLARFIYALGIREVGEATAANLAHHFADLGALMQAKEEQLLEVND- 272

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSS-EIENKK 651
                    VG I+A  I  F+Q P N   +EALL E    PS+ +  KNV +  +  + 
Sbjct: 273 ---------VGPIVASHIAHFFQQPHNQEIIEALLAEGIRWPSVDK--KNVEAMPLAGQT 321

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            V TGTL+ + R +A+  +  LGA VS  +S KT  ++ G + GSKL KA+ LG+++ +E
Sbjct: 322 WVLTGTLETLTRDQAKSRLVALGAKVSGSVSAKTHCVVAGASAGSKLTKAESLGIEVRDE 381


>gi|304405678|ref|ZP_07387337.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9]
 gi|304345717|gb|EFM11552.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9]
          Length = 689

 Score =  291 bits (745), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 209/722 (28%), Positives = 338/722 (46%), Gaps = 78/722 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q  + +  L  EI  H   YY   +P I D+E+D L     A+      +      + P 
Sbjct: 17  QQLERMRKLADEIERHSYSYYTLDRPTISDAEFDKLYDELVALEKTIGIVLE----HSPT 72

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDNSI-----F 127
            ++G E+     +  H     SL+K  N+EDLR +  R+ +    W  K  +        
Sbjct: 73  QRVGNELLKGFDQHRHRARLWSLDKAQNVEDLRAWNQRVQKGINDWNSKHPDETPLPEPS 132

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EI 184
           + LE K DG  + + YE G+ + AA RG+G  GE + A ++ I ++P    L IP    I
Sbjct: 133 YVLELKYDGLTLNLTYENGRLIQAATRGNGVVGEGILAQVKTIRSVP----LTIPFRDGI 188

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EV+GE  ++ +   A N        +P  N RNAA+G LR  NP     R LN F + +
Sbjct: 189 VEVQGEGIMNLSVLEAYNQ----TAEEPLKNARNAAAGALRNQNPKITAERKLNAFFYNI 244

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G    +  K   ++ Q +    F VN  V   ++   +      +  +R TL Y IDG V
Sbjct: 245 GHAEGVSFKTHQQLQQFLIENKFKVNPYVTYHDSMESVEEELLRVTEMRPTLDYLIDGAV 304

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+ +   ++ LG   + PRW ++ KF  ++ +T L  +  ++GRTG +TPVAR+EPV +
Sbjct: 305 VKLVDMRTREALGYTDKFPRWAVAFKFEAEETTTVLESVSWEVGRTGKITPVARVEPVEL 364

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  + N TL+N          G + R      +G RV ++R+ +VIP+++    +E   
Sbjct: 365 AGVTVQNCTLNN---------MGDIDRKNLKHALGTRVFIRRSNDVIPEILGKADDE--- 412

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +      PS CP C +     L  +   L     C   L C  Q + R+ HF SRDA +I
Sbjct: 413 EGTEIEVPSACPSCGTA----LEQRGAHLF----CNNKLGCKPQMIGRITHFASRDAMDI 464

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           E       +  ++       +R PAD++TL         K+E    FG+     L ++  
Sbjct: 465 ETFSVMTAEQLYEE----CGVRDPADLYTL---GYDDLIKLER---FGERKAQKLIEAFE 514

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K ++  L  F+F+LGI + G    + LA ++ S     Q               L+++P 
Sbjct: 515 KSKSRDLAAFLFALGIPNTGKATTKVLADHFGSLDAVLQATEE----------QLVQLPD 564

Query: 604 VGDIIAQAIVEFYQNPRNICAV----------EALLKEVSPSIGRHEKNVSSEIENKKLV 653
           +G I+A +IV F+ +P    ++          EA ++ V  +I    + V +    K +V
Sbjct: 565 IGGIVADSIVSFFADPLMQASISKMREQGVRAEAEIRRVPSAI----EGVDNVFTGKTVV 620

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL  + R +A + +  LGA V+  +S+KTD +I G++ GSKL KAQ LG+ ++ +E 
Sbjct: 621 LTGTLSTMTRDEAAKKLEALGAKVTGSVSKKTDFVIAGESAGSKLTKAQSLGIAVIEDEA 680

Query: 714 FL 715
             
Sbjct: 681 LF 682


>gi|119953337|ref|YP_945546.1| NAD-dependent DNA ligase LigA [Borrelia turicatae 91E135]
 gi|254781266|sp|A1QZY4|DNLJ_BORT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119862108|gb|AAX17876.1| NAD-dependent DNA ligase [Borrelia turicatae 91E135]
          Length = 676

 Score =  291 bits (744), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 209/703 (29%), Positives = 356/703 (50%), Gaps = 60/703 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I+    E+  L   I   +  YY  S P + D  YD    R   +   +P+    + P  
Sbjct: 10  IKDIEDEILCLRDNIRKWNKEYYVDSSPSVSDLTYDKALLRLQDLESKYPEYKTLDSPTL 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              K G ++  +  +VTHS P LSL+K ++I++L  +I ++         +    ++EPK
Sbjct: 70  ---KFGSDLLNNFEEVTHSFPILSLDKAYDIKELLLWIEKMV-LEGSSLGSYTGISVEPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEV 191
           IDG  I + Y+ G    A  RGDG  G DV+  +R I  +P    L+I E +E+  RGE+
Sbjct: 126 IDGCSIVLYYKDGILQKALTRGDGRVGNDVTENVRTIKNVP----LSIDEKVELVLRGEI 181

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
           YI+K +FL +N  +    + PY N RN ASGILRR+N  ++  + L+ FV+ +  +S   
Sbjct: 182 YITKENFLKINHTL----KNPYLNARNLASGILRRINSREVASFPLDIFVYDILYSSFGL 237

Query: 251 AKGQYEMLQKMRCLGFPVNNGVR--QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +   ++   K++  GF +N   +         I ++  +++  R++L Y+IDG+V KVD 
Sbjct: 238 ST-NHDAFDKLKKFGFKINPFCKFFGGKNLEEITNHVKKIEMQRNSLEYEIDGVVLKVDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F L+  LG  +  P+W +++KF      ++++DI +Q+GR+G +TPVA +E V + GA I
Sbjct: 297 FILRDILGYTSHHPKWSVAYKFESCTGVSKIVDIVVQVGRSGKITPVAHVEKVFVAGAFI 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNA+LHN+DYI   D+ G        + VGD V + R G+VIP  V+++V +    +  F
Sbjct: 357 TNASLHNQDYI---DSIG--------LNVGDVVAISRRGDVIP-AVELVVEKLSIGS--F 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
              S CP C+  ++++          +H       C  + +E++K+F S+   NI GL  
Sbjct: 403 KISSNCPSCKMALIKE---------GSHLFCVNKHCPYRIIEQIKYFCSKKCMNIVGLSG 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++F F  E    S  I    F   R        + N+ GF    + NL  SI+  +  
Sbjct: 454 KTIEFLF--EMKFISSEIELYTFNFDR--------LINLRGFDLKRIDNLKRSISDSKGR 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS-LIRVPLVGDI 607
              + +  +GI+ +GA     L    L+    + +I + +  N +  L+ L+++  +G+ 
Sbjct: 504 PFRKLLLGMGIKELGANTILVLINNNLN----SFDIISTLCKNKEAALAKLLKIKGIGEK 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRH 664
           IA  I+E + N + I       KE+   +  +  N     S +  KK   TG+ +   R 
Sbjct: 560 IALNIIEAF-NDKIILDKFNFFKELGFKLEEYNTNYVVDDSFLFGKKFCITGSFEGHSRD 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
              E +T+ GA+ +  ++++ D ++VG+ PG KL+KA  LG+K
Sbjct: 619 VLIEKITKKGAIFNRAVTKRLDFLLVGEKPGLKLQKANNLGIK 661


>gi|15894478|ref|NP_347827.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824]
 gi|81530636|sp|Q97JS8|DNLJ1_CLOAB RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|15024117|gb|AAK79167.1|AE007633_11 DNA ligase (NAD dependent), LigA [Clostridium acetobutylicum ATCC
           824]
 gi|325508609|gb|ADZ20245.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018]
          Length = 663

 Score =  290 bits (742), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 203/716 (28%), Positives = 356/716 (49%), Gaps = 72/716 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           K +  L ++++ +   YY    PI+ D EYD +          + +L R E+      PN
Sbjct: 2   KLIEDLIEKLNKYSYSYYVLDNPIVADKEYDIM----------YDELKRLEEETEYINPN 51

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIYRFWQKKDDN------S 125
            P  ++G ++ L  F+ TH    L SL+K    ++++ F+ +  +F ++ +        S
Sbjct: 52  SPTQRVG-DIILDKFEKTHHKNKLWSLDKAQKKDEVKAFVNKCVKFVEQYNLTHSEKLPS 110

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
             F +  K+DG  I   Y + + + +A RG G  GED++   + I  +P   ++N    I
Sbjct: 111 PQFVVTQKLDGLTINCSYNESRLIKSATRGTGEIGEDITEQSKTILNLPN--AINYSGEI 168

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLG 244
           +V GE  ++KN     N  +  V   P  N RN A+G LR LN  +  R  L    + L 
Sbjct: 169 DVHGEALMTKNALEQYNSNL-KVNETPLKNLRNGAAGALRNLNIKETARRKLVAQFYDLS 227

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            T +   K   E+L  ++  GF +       N F  I    + +  +RS+L YDIDG+V 
Sbjct: 228 YTDKKLKKYS-EILLFLKSQGFNITE-YNICNNFDEINQAIDNIGEVRSSLQYDIDGVVI 285

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           ++++    + +G   + P++ I++KF  K+ +T+L+D++  +GR+G + P A LEPV + 
Sbjct: 286 RLNDIETSRLMGYTIKCPKYAIAYKFKAKETTTKLIDVEWNVGRSGRINPTAILEPVELA 345

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++  ATL+N                 + I+ G RV ++R+ +VIP+++ +        
Sbjct: 346 GVIVKRATLNN-----------MDDIKRKKIKKGARVFLRRSNDVIPEIMGVTEETEGET 394

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNI 483
            +  + P+ CP C S +V++           H  C   L+C  Q ++ + HF SR A NI
Sbjct: 395 KEIEA-PTICPYCGSEIVKE---------GVHLFCENTLSCKPQMVKSIVHFASRKAMNI 444

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EG  ++  +  F+      +I+  +D++ + + +  S  K      F D   +NL ++I 
Sbjct: 445 EGFSEKTAEQLFEK----LNIKSISDLYRITKEELMSLDK------FKDKKASNLINAIE 494

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +   L+ F++SLGI +VG + A  L K + S++N  +            +  LI V  
Sbjct: 495 KSKECDLDSFVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYFELILVQD 544

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G I+A++IV+F++  +   ++  L K          +   S   +K +V TG+LQ   R
Sbjct: 545 IGSIVAKSIVDFFKQEKIEKSLNELFKLGVKPSYEESEVSESVFNDKTVVATGSLQNYSR 604

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + +E +  LGA V+  +S+KTD +I G+N GSK +KA  LGVKI+ EE+F  L++
Sbjct: 605 TEIKEKLESLGAKVAGSVSKKTDYVIAGENAGSKYDKAVALGVKILTEEKFEELIE 660


>gi|255316598|ref|ZP_05358181.1| DNA ligase, NAD-dependent [Clostridium difficile QCD-76w55]
          Length = 663

 Score =  290 bits (741), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 215/713 (30%), Positives = 342/713 (47%), Gaps = 64/713 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  +++  L +E+  HD  Y +   PII D+EYD L  +   +   +P+ +   D N 
Sbjct: 1   MNKVEEKIRDLREEVIKHDLAYAK-GDPIISDTEYDKLYLKLVGLEELYPEYS---DENS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  +I       L KV H+IP LS +KI   ++L KFI       Q  D+      +E K
Sbjct: 57  PTKRIIDIKVEGLKKVEHTIPMLSQKKINTPDELDKFIR------QMNDE----LLVEDK 106

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +  +Y  G       RGDG  G+D++  +   P IP+ +  N  + +E+R E  I
Sbjct: 107 LDGLTVIAKYNNGVLYEGITRGDGKIGDDITHIVLNTPNIPKTIPFN--DYLEIRLEGII 164

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
              DF  +N   I      Y + RN ASG +R LN      R L      L K   I  +
Sbjct: 165 PNEDFEMVNS--ILEEEDKYKSSRNLASGTVRSLNGCVAKERGLKLIAFELVKADNIIFE 222

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSY------YNEMKSIRSTLPYDIDGLVYKV 306
             YE L+ ++ LGF V N          I+        YN+   +R  L Y +DGLV K 
Sbjct: 223 KDYERLEFLKTLGFDVVNYTLFKKNEEDILKLKDYIFSYNQ--EVRPFLSYKVDGLVIKA 280

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +   L+  LG  ++ P+W  + KF  ++A T+L D  I++G++G LTPVA  EPV I G 
Sbjct: 281 NSLELRDSLGNTSKYPKWSSAFKFENEEAITKLKDCIIEVGKSGQLTPVALFEPVQIDGI 340

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+ ATL N   +K            +DI++GD V+V RA +VIPK+   I  +R  + +
Sbjct: 341 TISKATLSNFKNVK-----------DKDIKIGDMVVVARANDVIPKIEHSIKEDRTGEEK 389

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P FCP+C   +V++           H       C AQ   ++ HFVS+ + +I+GL
Sbjct: 390 EIEIPKFCPVCNEPIVKE---------NVHYFCVNDDCPAQIEGKIIHFVSKKSLDIDGL 440

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +  F    D    I    DIF L+ ++            + D  V+NL ++I   +
Sbjct: 441 GEESIKLFL---DNGL-ISSIIDIFYLKDKKDDLLKL----DKYADKKVSNLLENIEASK 492

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SL + +  L I+ +G   ++ LA  ++S +N    I NI  +  +   S++ +   G+
Sbjct: 493 QASLSKILHGLSIKLIGGRASKELANKFISMKN----ILNISKNEEEFKQSILSINNFGE 548

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQR 663
            ++  +V F+++ RNI  +  L+ EV   +      V+ E   +  K +V TG      R
Sbjct: 549 EMSNNLVLFFKDERNIELINKLM-EVGFKMEEQIVKVNEEENMLTGKTVVITGKFTDFTR 607

Query: 664 HKAQEYV-TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +  E +  + G   S  +S+KTD +I GD  GSK  KA +LGVK++ E++ L
Sbjct: 608 EELTEKIENEFGGKCSKSVSKKTDFLIYGDKAGSKYNKALELGVKLITEKELL 660


>gi|212696137|ref|ZP_03304265.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676766|gb|EEB36373.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 668

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 209/707 (29%), Positives = 351/707 (49%), Gaps = 78/707 (11%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGG 80
           E++YH   YY   +PI+ D EYD L          + +L   E+  G      P  ++GG
Sbjct: 18  ELNYH---YYTLDEPIVSDGEYDKL----------YDELRELENSTGYINAFSPTQRVGG 64

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKDD--NSIFFTLEPKI 134
            +     K  H     S +K  NI+ L+ +I R  +    +    DD    + F  E K 
Sbjct: 65  TILDKFEKHFHITRLYSQDKSQNIDQLKDWIIRTKKLRDQYNNSHDDKLEKLEFLTEYKF 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + YE G    A+ RG+G  GEDV+  +  IPTIP    +    ++E++GE  + 
Sbjct: 125 DGLTINLTYENGLLKTASTRGNGIVGEDVTKQVLTIPTIP--TKIKEKSLLEIQGEAVMP 182

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
            +     N+E       P  N RNAA+G +R L+ +    R L  + + +   S  F K 
Sbjct: 183 LSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTRKRNLKAYFYQISTNSLDF-KT 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           + + L  +     PV    +    F  IV   + +K  R  +    DG+V KV++   Q+
Sbjct: 238 EEDKLNFLEEQKLPVYPYKKLIKNFDEIVKEIDYIKEERHHIDVLTDGVVIKVNDVKTQE 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   + PRW I++K+  ++ +T+LLD+   +GRTG +TP A LEPV+  G  +  ATL
Sbjct: 298 VLGYTNKFPRWSIAYKYDPEEYTTKLLDVVWNVGRTGKVTPSAILEPVDFSGVTVQRATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           +N D          ++R  + +++G +V ++R+ +VIP+++  +V+E   +      P+ 
Sbjct: 358 NNYD---------DILR--KKVKIGSQVFIRRSNDVIPEILG-VVDENQENTVEIKKPTK 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           CP C S ++             H  C   ++C+ Q   R+ HF SRDA +IEGL ++ ++
Sbjct: 406 CPYCHSELIEG---------NVHIYCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTVE 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F    D    I+   D++ L+         + N+  F +    NL  +I   +   L  
Sbjct: 457 LFINELD----IKEIYDLYDLKYED------LINLESFKEKKTNNLLQAIENSKKCDLNH 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI+++GI +VG + AR LA+ Y S +N         A  +D    L+ V  +G+  +  I
Sbjct: 507 FIYAIGIPNVGVKTARDLAEKYKSLENLRN------AKEDD----LVEVEDIGEKTSHDI 556

Query: 613 VEFYQNPRNIC-AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           VEF+ N +NI  +++ LL++        E  VS+ +E  K+V TG+++  +R+  ++ + 
Sbjct: 557 VEFF-NDKNIKESIDKLLEKGIKIKKIEESEVSNSLEGMKIVITGSIENYKRNDIKKLIL 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFL 717
                V++ +S+ TD+++ G+ PGSK EKA QLG+K++ NEE F F+
Sbjct: 616 DHNGDVTSSVSKNTDLVLCGEKPGSKKEKADQLGIKVLENEELFEFI 662


>gi|329937546|ref|ZP_08287104.1| DNA ligase [Streptomyces griseoaurantiacus M045]
 gi|329303422|gb|EGG47309.1| DNA ligase [Streptomyces griseoaurantiacus M045]
          Length = 697

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 214/727 (29%), Positives = 339/727 (46%), Gaps = 91/727 (12%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY      + D  YD L R   A     P+      P  P  K+ G        V H++
Sbjct: 21  AYYADGTSALDDEAYDRLVRGIAAWEADHPEQVL---PGSPTGKVAG--GAVEGDVPHTV 75

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             LSL+ +++ E+   +   + R    + +    F++EPK+DG  +  RY KG+      
Sbjct: 76  AMLSLDNVFSPEEFTAWTASLARRAGHEVER---FSVEPKLDGLAVAARYTKGRLERLIT 132

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG +GEDVS  I  I  +P  + L  P  +EVRGEV ++   F   N+   A G +P+
Sbjct: 133 RGDGTAGEDVSHAIGTIEGLP--VELAEPVTVEVRGEVLMTTAQFEHANEVRTAHGGQPF 190

Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGL----GKTSEIFAKGQYEMLQKM--RCLGFP 267
           ANPR A++G LR       T  + FF +GL    G  + +  +   E   ++  R   + 
Sbjct: 191 ANPRGASAGSLR-ARERAYTVPMTFFGYGLLPLPGTDTALATRLADEAHSELMTRAAAYG 249

Query: 268 VNNGV------RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           +N           A T   ++    E+ ++R+ LP+ IDG+V K D  + Q+  G  +R+
Sbjct: 250 INTTATTAVPGSTAGTVTEVLDRVREIAALRAELPFGIDGIVVKADLAADQRAAGSGSRA 309

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++K    +  TRLL+++  +GRTGI+ P A LEPV I GA IT ATLHN   I  
Sbjct: 310 PRWAIAYKLPAVEKITRLLEVEWNVGRTGIIAPRAVLEPVEIDGATITYATLHNPADIT- 368

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      RD+R+GDRV+V RAG+VIP+V   + + R  + QP  FP+ CP C + +
Sbjct: 369 ----------RRDLRLGDRVMVHRAGDVIPRVEAPVAHLRTGEEQPIVFPAVCPRCGAGI 418

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
                  TG+     RC  G  C    +  L +   RD  +IEGLG  ++         A
Sbjct: 419 ------DTGE--QRWRCENGRNC--HLVAALSYAAGRDQLDIEGLGHTRVVQLVD----A 464

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIFSLG 558
             +   AD+F+L R Q         +LG    G+ S  NL  ++   +   L R + +LG
Sbjct: 465 GLVTDLADLFSLTREQ---------LLGLERMGETSTDNLLAALETAKGRPLARVLCALG 515

Query: 559 IRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIR-----VPLVGDIIA 609
           IR  G  ++R +A+++ +  +     A+ +  +     +   S++       PL+  ++A
Sbjct: 516 IRGTGRSMSRRIARHFATMDHIRAADAEAMRRVEGIGTEKAPSIVAELAELAPLIDRLVA 575

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL---------------VF 654
             +     N     A     +E  P+ G   ++     E  +                  
Sbjct: 576 AGV-----NMTEPGATPPAPEE--PATGEQAEDTRGGAEAAEESPGGPLAGMTVVVTGAM 628

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG L+K+ R++  E V Q G   S+ +SRKT +++ G+  GSK  KA+ LG+++   E+F
Sbjct: 629 TGRLEKLSRNRMNELVEQAGGRSSSSVSRKTTLVVAGEGAGSKRAKAESLGIRLATPEEF 688

Query: 715 LFLLQQY 721
             LL  +
Sbjct: 689 AALLADH 695


>gi|154507531|ref|ZP_02043173.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799320|gb|EDN81740.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC
           17982]
          Length = 777

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 168/487 (34%), Positives = 262/487 (53%), Gaps = 27/487 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+   + E  R   + L   I+     YY    P + D++YD + R  + I   +P L  
Sbjct: 3   PMADSTFETTRDRYNDLVDRINEARAAYYDRDSPTLADADYDRMYREVEEIEERYPQLRG 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           ++ P      +GG ++    +V H    +SL+ ++++E+L  + TR+       D   + 
Sbjct: 63  ADSPT---MSVGGSVDSGFSEVRHLAQMMSLDDVFSLEELAGWETRMAEATGISD---LE 116

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            T E K+DG  I + YE G+ V AA RGDG+ GEDV+A  R I +IP+ LS  +P  IEV
Sbjct: 117 MTTEVKVDGLSINLLYENGRLVRAATRGDGYVGEDVTANARTIASIPQTLSGTVPTRIEV 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-- 244
           RGEVY    DF A N+  +  G K + N RNAA+G LR+ +P +   R L    HG+G  
Sbjct: 177 RGEVYFPVADFAAFNEARVEAGEKTFVNARNAAAGSLRQKDPAETAKRPLAMVAHGIGFV 236

Query: 245 KTSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +  E F +   Q    +++R  G PV+   R       I     E+   R  L ++IDG+
Sbjct: 237 EAGEDFTEPITQMGWYEQLRDWGLPVSPYTRVLTGRKAIEERIAELGEKRHDLEHEIDGV 296

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K+++  LQ+ LG  +R+PRW  ++KF  ++  TRLLDI +Q+GRTG +TP   +E V 
Sbjct: 297 VVKINDLDLQRSLGSTSRTPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMESVL 356

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ +  ATLHN         + +V R G  + +GD V++++AG+VIP++V  + + R+
Sbjct: 357 VAGSNVARATLHN---------AQEVARKG--VLIGDLVVLRKAGDVIPEIVAPVEDARN 405

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              +PF  P+ CP C + +V++   K G +    RC     C AQ  ERL H  +R A +
Sbjct: 406 GSERPFVMPTECPSCGTTLVQE---KEGDV--DLRCPNKGLCPAQITERLAHVGARSALD 460

Query: 483 IEGLGKQ 489
           +EGLG +
Sbjct: 461 VEGLGDE 467



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 12/179 (6%)

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIR 600
           + K ++  L R + +L IRHVG   AR+LA+ +LS     A  +  + A           
Sbjct: 602 LEKAKSQPLARVLVALSIRHVGPTAARALAEKFLSMDALRAASVEELSA----------- 650

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           V  VG+ I +++ +++    ++  ++A  +          +  S  +    +V +G +  
Sbjct: 651 VEGVGEEIGRSLRDWFTVDWHLEVLQAWARAGVRMADEAPEPTSDVLAGLTVVVSGAMPG 710

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             R  A+E +T  G      +S+KT +++ G   GSK  KA+ LGV ++ E+QF  LL+
Sbjct: 711 YDREGAKEAITSRGGKAVGSVSKKTSLVVAGPGAGSKAAKAEALGVPVITEQQFTDLLE 769


>gi|238917130|ref|YP_002930647.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750]
 gi|238872490|gb|ACR72200.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750]
          Length = 669

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 209/715 (29%), Positives = 353/715 (49%), Gaps = 64/715 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E S L++ I YH D YY   +P I D EYD L  R   I    P+   S+ P+    KI
Sbjct: 5   QEYSELKKTIDYHMDRYYNQDEPEISDYEYDKLMIRLKEIEKEHPEWVTSDSPS---QKI 61

Query: 79  GGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG +      KVTH++P LS+E +++ + +  ++ +++            F++E KIDG 
Sbjct: 62  GGTVKREAGVKVTHNVPMLSIEDVFSEDAVCAWVDKVHAMHP-----DCTFSVETKIDGL 116

Query: 138 MITIRYEK---GKFVY--AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
            +++RY K   GK     A  RGDG  GEDV+A  R +  + +V+ L   + +E+RGEVY
Sbjct: 117 SMSLRYVKEADGKLHLHLAETRGDGLIGEDVTANARVVGDVLQVIDLPY-DSLELRGEVY 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250
           +S  DF   N+E   + +K  ANPRN A+G LR+L+ T IT  R L  F+  +    +  
Sbjct: 176 MSHEDFEKYNEEQERLEKKTAANPRNLAAGTLRQLD-TSITKKRGLKIFIFNVQDGPDEI 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     +  ++  G PV    +   T   +V   +E+  +R  LPYDIDG V K+D  +
Sbjct: 235 MESHGRGMDILKAAGVPVVYH-KICKTKEEVVRAIDEIGRMREELPYDIDGAVVKIDHIA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL------EPVNIG 364
            +++    ++     I++K+  ++    + DI + +GRTG LT           +P  + 
Sbjct: 294 FRQEFPAGSKYSSGHIAYKYPPEEKVIVMDDILVDVGRTGKLTFTGIFHDPETGKPARLC 353

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ ATLHN+DYI  ++           + +G    + ++GE+IPK+   +    H  
Sbjct: 354 GTSVSRATLHNQDYITQMN-----------VGIGGEYKLFKSGEIIPKLNGCVKAPEHV- 401

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              F  P  CP+C   ++R+ +       A  RC    +C+AQ    + +F S D  NI 
Sbjct: 402 ---FEAPKVCPVCGEPLIREED------TADIRCVNP-SCAAQLSRTVAYFTSLDCMNIM 451

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG+  +D   K       I   ADI+ L+  +     K   I+G  + +   L  +I K
Sbjct: 452 GLGETLVDALIKD----GYIHNYADIYALKEHRDELIEK--GIIG-KEKNTDKLLAAIEK 504

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  + +R + +LGIR+VG   A+ +  YY          +N++   +     L  +P +
Sbjct: 505 SKENTPDRLLTALGIRNVGKNTAKQIMNYY----------DNLMELADAGEEELQNIPDI 554

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G   A+ I +F+ +  NI  +E L +         +K +S ++E K +V TG+     R 
Sbjct: 555 GATTAKCIHDFFHDEANIELLERLKQSGLNMQMPEKKEMSDKLEGKTIVVTGSFDNYSRK 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +E +   G   +  +S+KTD ++ G+  GSKL+KA  LGVK++  ++F+ +++
Sbjct: 615 DMEELIVSNGGKATGSVSKKTDYLVAGEAAGSKLDKANSLGVKVLTIDEFMEMIK 669


>gi|71893614|ref|YP_279060.1| DNA ligase [Mycoplasma hyopneumoniae J]
          Length = 693

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 220/743 (29%), Positives = 364/743 (48%), Gaps = 90/743 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74
           Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  P
Sbjct: 7   QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 66

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---NSIFFTLE 131
             K+G ++     KV HS P LSL K ++ E+L K        W KK      ++ F +E
Sbjct: 67  SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEK--------WAKKASEILKTVTFFVE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRG 189
           PKIDG  +++ Y+ G  + A  RGDG  GE+V      I    IP+   +N  E +EVRG
Sbjct: 119 PKIDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPK--KINYLEDLEVRG 176

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR---------------LNPTDITR 234
           E+YI  + F +L  E      K + NPRNAASGILRR               L      R
Sbjct: 177 EIYIDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFR 231

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           YL  F + L    +     Q++ +  +R LGF VN   ++ +    + ++ + +K  R  
Sbjct: 232 YLKSFFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDF 291

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L Y+IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T 
Sbjct: 292 LNYNIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTY 351

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A++EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++
Sbjct: 352 NAKIEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQII 400

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             + N  +P    FS    CP C S +V   N ++G       C     C    L+++ H
Sbjct: 401 GSVHN--YPKTN-FSIVKNCPKCNSELV---NSESG---LDQFCQNQF-CPEIILQKIVH 450

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN---ILGFG 531
           F S++A NIE L +++++ F +       I    DIF L+ + +    ++ N   +L   
Sbjct: 451 FCSKNALNIESLAQKRIEKFLEKG----LISSACDIFYLKDKLELIYERLSNKNQLLTKQ 506

Query: 532 DV-------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           +        S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +        
Sbjct: 507 NASQSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLD 566

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEK 641
            N++ + +D           G +I +++++++ N +N   +  +E +      +   ++ 
Sbjct: 567 FNLLKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQS 616

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           N  +         +G L K  R +    + + GA     L++KTD +++G + GSK+EKA
Sbjct: 617 NSWAS-----FAISGKLSK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKA 670

Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724
           ++ G+KI+NE QF  L++    T
Sbjct: 671 KKAGIKIINEVQFFDLIKNSKKT 693


>gi|166215831|sp|Q4AA72|DNLJ_MYCHJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|144227540|gb|AAZ44349.2| DNA ligase [Mycoplasma hyopneumoniae J]
          Length = 692

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 220/743 (29%), Positives = 364/743 (48%), Gaps = 90/743 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74
           Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  P
Sbjct: 6   QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 65

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---NSIFFTLE 131
             K+G ++     KV HS P LSL K ++ E+L K        W KK      ++ F +E
Sbjct: 66  SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEK--------WAKKASEILKTVTFFVE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRG 189
           PKIDG  +++ Y+ G  + A  RGDG  GE+V      I    IP+   +N  E +EVRG
Sbjct: 118 PKIDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPK--KINYLEDLEVRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR---------------LNPTDITR 234
           E+YI  + F +L  E      K + NPRNAASGILRR               L      R
Sbjct: 176 EIYIDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFR 230

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           YL  F + L    +     Q++ +  +R LGF VN   ++ +    + ++ + +K  R  
Sbjct: 231 YLKSFFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDF 290

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L Y+IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T 
Sbjct: 291 LNYNIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTY 350

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A++EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++
Sbjct: 351 NAKIEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQII 399

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             + N  +P    FS    CP C S +V   N ++G       C     C    L+++ H
Sbjct: 400 GSVHN--YPKTN-FSIVKNCPKCNSELV---NSESG---LDQFCQNQF-CPEIILQKIVH 449

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN---ILGFG 531
           F S++A NIE L +++++ F +       I    DIF L+ + +    ++ N   +L   
Sbjct: 450 FCSKNALNIESLAQKRIEKFLEKG----LISSACDIFYLKDKLELIYERLSNKNQLLTKQ 505

Query: 532 DV-------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           +        S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +        
Sbjct: 506 NASQSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLD 565

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEK 641
            N++ + +D           G +I +++++++ N +N   +  +E +      +   ++ 
Sbjct: 566 FNLLKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQS 615

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           N  +         +G L K  R +    + + GA     L++KTD +++G + GSK+EKA
Sbjct: 616 NSWAS-----FAISGKLSK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKA 669

Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724
           ++ G+KI+NE QF  L++    T
Sbjct: 670 KKAGIKIINEVQFFDLIKNSKKT 692


>gi|303252067|ref|ZP_07338236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649049|gb|EFL79236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 451

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 253/416 (60%), Gaps = 21/416 (5%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   ++ P     ++G
Sbjct: 17  QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH IP LSL+  ++ E+L  F+ R+  +   +D +++ F  EPK+DG  +
Sbjct: 74  AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESY-ITEDPHTLAFCCEPKLDGLAV 132

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED+++ IR I  IP  L++ N P  +EVRGEV++ +  F
Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254
            ALN+  +  G K +ANPRNAA+G LR+L+P  ITR     LN +  G+ ++ +      
Sbjct: 193 EALNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPATH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+  +F
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKSNF 416


>gi|37788926|gb|AAO65604.1| hypothetical NAD-dependent DNA ligase [Candidatus Phytoplasma
           solani]
          Length = 495

 Score =  286 bits (733), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 177/525 (33%), Positives = 283/525 (53%), Gaps = 51/525 (9%)

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN +     + P+ANPRNAASG LR+LN   +  R L+ F++ +  +  +    Q  
Sbjct: 6   FEKLNQKQKENNKTPFANPRNAASGTLRQLNSKIVAQRNLSIFIYNIA-SPYLIKPTQLA 64

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +  LGF VN     A TF  ++      K I+ T PYD DG+V KV+E +L   +G
Sbjct: 65  SLEFLIQLGFTVNPHYNLALTFEDLLVKIQNYKVIKDTQPYDTDGVVIKVNELALHALIG 124

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++P+W I++KF  K + + + DI  Q+GRTG++TP+ ++ PV + G+LI+   LHN 
Sbjct: 125 ATSKAPKWAIAYKFPAKTSQSIVTDIIFQLGRTGMITPICQIMPVLVDGSLISKVVLHNY 184

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V V +AG VIP++++++ ++R    +       CP 
Sbjct: 185 DFI-----------SKKDIRIGDCVTVHKAGSVIPEILEVVASKRTNQKKTMMILQ-CPY 232

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V+    K GK+   + C     C  Q+++RL HFVS+ A +I  LG++ +   F 
Sbjct: 233 CKSNLVK----KEGKV--DYFCLND-DCYWQKIQRLIHFVSKKAMDINVLGEKTIITLFN 285

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ P+D++ L     T    ++ +  FG   + N+  +I + +   LER +F 
Sbjct: 286 QH----LIQKPSDLYLL----HTHLNILQTLPSFGQKKINNILKAIEQSKTKPLERVLFG 337

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI+HVG +I++ L K  LS +  A               +L  +P +GD IA++I  F+
Sbjct: 338 LGIKHVGEKISQVLVKNNLSLEKLA----------TIKLEALTAIPEIGDKIAKSINIFF 387

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSE-------IENKKLVFTGTLQKIQRHKAQEY 669
            NPRNI  ++ L       +G   +N  ++         +KK+V TGTLQ   R +  + 
Sbjct: 388 NNPRNIAEIQKL-----QQLGVSFQNTINQTVVKKTFFSDKKIVLTGTLQNYTRLELTQI 442

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           + Q+GA +S+ LS KTD +I G N GSKL KAQ+L + I+ E Q 
Sbjct: 443 LKQMGANISSSLSAKTDFLIAGTNAGSKLTKAQKLKISIIEEAQL 487


>gi|240047590|ref|YP_002960978.1| DNA ligase [Mycoplasma conjunctivae HRC/581]
 gi|239985162|emb|CAT05172.1| DNA ligase [Mycoplasma conjunctivae]
          Length = 673

 Score =  286 bits (733), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 226/725 (31%), Positives = 361/725 (49%), Gaps = 81/725 (11%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG-P 74
           + ++++  L ++I   +  Y+    P + D  YD   ++   + + +  L   E+ N  P
Sbjct: 5   EIKQQILQLRKKIENWNHEYFDLQNPSVDDLIYDEELKKLKILENKYYFLFSLEELNSSP 64

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-----DDNSIFFT 129
             +IG + +    KV HS P LSL K ++IE+L K        W KK     +DN   F 
Sbjct: 65  TQQIGAQTSTKFNKVYHSSPMLSLNKAYDIEELEK--------WVKKANLVGEDN---FY 113

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDV--SACIRAIPTIPRVLSLNIPEIIEV 187
           +EPKIDG  I + Y+KGK   A  RGDG  GED+  +A   A   IP+   +N  + +EV
Sbjct: 114 VEPKIDGLSIALIYKKGKLSSALTRGDGLQGEDILHNALRIANKFIPK--QINYQQDLEV 171

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR------YLNFFVH 241
           RGE++IS  DF  L            ANPRNAASG+LRR+  T          YL+ F++
Sbjct: 172 RGEIFISNQDFQILQQNS---NSSSLANPRNAASGLLRRIEKTSKNSKINDFDYLSCFIY 228

Query: 242 GL-----GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
            L      K   I  K  Y  L+K   LGF +N     A     IV    +++ +R  L 
Sbjct: 229 NLVNPQLHKIKNI--KESYLFLEK---LGFHLNPLSSLAKGLTNIVKQIGKIEKLRPQLE 283

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           Y+IDG+V KV+++ + +QLG  ++ P   I+ KF ++   T+LLDI   +GRTG +T  A
Sbjct: 284 YNIDGVVIKVNDYEIYEQLGRTSKFPHGAIAFKFEDQIVQTKLLDIFATVGRTGKITYNA 343

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           +LEP+N+ G  ++ A L N  YI+ L            I +   VLVK++GE+IP+   I
Sbjct: 344 KLEPINLLGTTVSAAILPNYKYIENL-----------KIAINSDVLVKKSGEIIPQ---I 389

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           I + +   A  F   S CP C   +V   +  +G      +     AC A QL+++ HF 
Sbjct: 390 IASVQDHQATNFQKISHCPSCNFELV---DSPSG----IDQFCQNFACPAIQLKKIAHFC 442

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI-ENILGFGDVSV 535
           S+ AFNI  L ++++     +      I+   DIF L+       ++  +  +     S+
Sbjct: 443 SKSAFNIASLAEKRIQTLIDTN----LIKNSCDIFFLKDNLDEMHSRFAKEKVKLKAKSI 498

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
           TN  + I   +     RFIF+LGI+++G + A+++AKY     +  Q IN   A   +D+
Sbjct: 499 TNFLNEIELSKKNDFYRFIFALGIKNIGLKAAKAIAKY---VGDVEQLINFDFAQLENDY 555

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
                    G I+ Q+++EF+ N  N   +    K+V  +    +K+            T
Sbjct: 556 -------DFGPIMVQSLLEFFANSNNQELLNC-FKKVDFAFKPTQKDFPVWAS---FAIT 604

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G L K  R + ++ + + GA   + L++KT  ++ G++ GSK+EKA+   + I+NEEQF 
Sbjct: 605 GKLSK-SRDQFEKIIVESGAQFDSNLNKKTTYLLAGESSGSKIEKAKAYNINIINEEQFW 663

Query: 716 FLLQQ 720
            L+++
Sbjct: 664 DLIEK 668


>gi|299144358|ref|ZP_07037438.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518843|gb|EFI42582.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 664

 Score =  286 bits (732), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 224/721 (31%), Positives = 357/721 (49%), Gaps = 91/721 (12%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           +EL     +++YH   YY    PI+ D+EYD L          + +L + ED       N
Sbjct: 8   RELIDKVNKLNYH---YYTLDDPIVSDAEYDEL----------YYELKKLEDENKIILAN 54

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIF 127
            P  ++GGE+     K TH  P  SL+K  + E+LR +  R  +  Q      K+  ++ 
Sbjct: 55  SPTTRVGGEVLSKFEKHTHIAPLYSLDKAQSYEELRAWHERNLKALQSYRASGKNIENLK 114

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--II 185
           + +E K DG  I + YE G    A+ RG+G  GE++   I+ I +IP    L IP   ++
Sbjct: 115 YVVELKFDGLTINLTYEDGYLKMASTRGNGFIGEEILPQIKTIYSIP----LEIPYKGLM 170

Query: 186 EVRGEVYI---SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH 241
           EV+GE  +   S   F   +DE +        N RNAA+G LR L+P    +R L  F +
Sbjct: 171 EVQGEGLMPLSSLEKFNRTHDEQLK-------NARNAAAGALRNLDPKVTKSRNLTAFFY 223

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +G   +   +   EM + +R  GF VN           ++    ++ SIR +L   IDG
Sbjct: 224 NVGYIKDDRFRDDSEMKKFLRDNGFRVNENNYICKNLDEVIEKIEKIGSIRESLDILIDG 283

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +  K+++   +  LG   + PRW I++KF  K+ ST+LLD+   +GRT  +TP A L+PV
Sbjct: 284 VTIKINDMETRDLLGFTNKFPRWAIAYKFEAKEVSTKLLDVVWNVGRTSKVTPSAILQPV 343

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            IGG  I  ATL+N D I             + IR+  RVL++R+ +VIP+++  +    
Sbjct: 344 EIGGVTIKKATLNNYDDIL-----------KKKIRINGRVLLRRSNDVIPEILGAL--PT 390

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDA 480
             +      P +CP C + + +D           H  C   L+C  Q + RL HF SRDA
Sbjct: 391 EEETIEIEMPKYCPSCGTELFKD---------GVHIFCPNTLSCVPQLVSRLTHFASRDA 441

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NIEGL +  +       D    IR    I+ L+++      K+E   GF +    NL  
Sbjct: 442 MNIEGLSEMTISKLLNELD----IREIPQIYELEKQD---LLKLE---GFKEKRANNLIS 491

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   +   L  FI+SLGI +VG + A  LA  +  +        +++ H   D   L+ 
Sbjct: 492 AIADSKIRPLPNFIYSLGINNVGIKTAYDLANKFKDF--------DLLRHAKYD--ELVD 541

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVFTGT 657
           +  +G I A+ IVEF+ +     +++ L +  VSP   + E++   E   ++K++V TGT
Sbjct: 542 IDDIGPITAKEIVEFFNDKHIEKSIDRLFELGVSP---KFEESTDEETYFKDKRIVITGT 598

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  I R + +  + + GA +S+ +S+ TD +I G++ GSK +KA  LG++I++E +   L
Sbjct: 599 LS-IPRKELENMLIKFGAKISSSVSKNTDFVIAGEDAGSKYDKAINLGIEIIDENKLREL 657

Query: 718 L 718
           L
Sbjct: 658 L 658


>gi|54020343|ref|YP_115627.1| DNA ligase [Mycoplasma hyopneumoniae 232]
 gi|81378764|sp|Q601T8|DNLJ_MYCH2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53987516|gb|AAV27717.1| DNA ligase [Mycoplasma hyopneumoniae 232]
          Length = 692

 Score =  286 bits (732), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 220/743 (29%), Positives = 363/743 (48%), Gaps = 90/743 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74
           Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  P
Sbjct: 6   QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 65

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---NSIFFTLE 131
             K+G ++     KV HS P LSL K ++ E+L K        W KK      ++ F +E
Sbjct: 66  SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEK--------WAKKAREILKTVTFFVE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRG 189
           PKIDG  +++ Y+ G  + A  RGDG  GE+V      I    IP+   +N  E +EVRG
Sbjct: 118 PKIDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPK--KINYLEDLEVRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR---------------LNPTDITR 234
           E+YI  + F +L  E      K + NPRNAASGILRR               L      R
Sbjct: 176 EIYIDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFR 230

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           YL  F + L    +     Q++    +R LGF VN   ++ +    + ++ + +K  R  
Sbjct: 231 YLKSFFYTLVNPEKHKINSQFDSTNFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDF 290

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L Y+IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T 
Sbjct: 291 LNYNIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTY 350

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A++EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++
Sbjct: 351 NAKIEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQII 399

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             + N  +P    FS    CP C S +V   N ++G       C     C    L+++ H
Sbjct: 400 GSVHN--YPKTN-FSIVKNCPKCNSELV---NSESG---LDQFCQNQF-CPEIILQKIVH 449

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN---ILGFG 531
           F S++A NIE L +++++ F +       I    DIF L+ + +    ++ N   +L   
Sbjct: 450 FCSKNALNIESLAQKRIEKFLEKG----LISSACDIFYLKDKLELIYERLSNKNQLLTKQ 505

Query: 532 DV-------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           +        S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +        
Sbjct: 506 NASQSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLD 565

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEK 641
            N++ + +D           G +I +++++++ N +N   +  +E +      +   ++ 
Sbjct: 566 FNLLKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQS 615

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           N  +         +G L K  R +    + + GA     L++KTD +++G + GSK+EKA
Sbjct: 616 NSWAS-----FAISGKLSK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKA 669

Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724
           ++ G+KI+NE QF  L++    T
Sbjct: 670 KKAGIKIINEVQFFDLIKNSKKT 692


>gi|282882908|ref|ZP_06291513.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B]
 gi|281297319|gb|EFA89810.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B]
          Length = 664

 Score =  286 bits (732), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 209/712 (29%), Positives = 355/712 (49%), Gaps = 71/712 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PN 72
           QA +++  L +E++ +   YY   K +I D  YD   R  D + +    L + E+    +
Sbjct: 2   QASEKMQKLVKELNRYGYYYYTLDKSLIDDKVYD---RMYDELVN----LEKEENIVLAD 54

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SI 126
            P  ++GG++  S  K  H  P  S+ K  + ++LR +I +   F +  +++       +
Sbjct: 55  SPTTRVGGQILKSFQKHKHLNPLYSMNKAQSFDELRDWIEKNKNFIENYNESHEDKLSEM 114

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              LE K DG  I + YE G    A  RG+G  GE +++ ++ I +IP  LS++   ++E
Sbjct: 115 ELILELKFDGLTINLTYEDGYLKMATTRGNGLIGEVITSQVKTINSIP--LSIDYKGLVE 172

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           ++GE  +     L   +E      +   N RNAA+G LR L+P +   R L  + + +  
Sbjct: 173 IQGEGLMP----LKSLEEYNKKASEKLKNARNAAAGALRNLDPKETKARNLTAYFYNVNY 228

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM + ++  GF V+    +  +F  +    N +  IR  LP  IDG+  K
Sbjct: 229 IEGKNFKDDVEMKEFLKSQGFLVSKYNYKVKSFKDVQEKINYIADIRKDLPIQIDGVTIK 288

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +++F  ++ L    + PRW I++KF  + A ++LL++   +GR+  +TP A +EPV I G
Sbjct: 289 INDFKTREILSFTQKFPRWSIAYKFEAEIAESKLLEVVWNVGRSSKVTPSAIIEPVEIDG 348

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             I  ATL+N D I             + +R+   +L++R+ +VIP+++ ++ +    D 
Sbjct: 349 VTIKRATLNNFDDI-----------NRKKLRLNSNILIRRSNDVIPEILGVLPS----DE 393

Query: 426 QPFSF--PSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFN 482
           + F+   P  CP C + + +D           H  C   L+C  Q + RL HF SRDA N
Sbjct: 394 KTFAIKRPKVCPACGAHLFQD---------GVHIFCPNTLSCRPQLVSRLVHFASRDAMN 444

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I G  ++ ++ F    D      IP DI+ L   +     K+E   GF +    NL ++I
Sbjct: 445 INGFSEKTIEKFM---DELGLKEIP-DIYNL---KYDDIIKLE---GFKEKKTKNLLEAI 494

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +N  L  FI+++GI +VG + AR LAK+Y           N +A +   +  LI V 
Sbjct: 495 ENSKNPFLSNFIYAIGIANVGIKTARDLAKHY----------KNFMAFSKASFDDLIEVG 544

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G I A+ I+ F+ +      ++ L       +     N   + E K +V TG+L + +
Sbjct: 545 DIGPITAKEIINFFADDHIKDGLQKLFSYGIKVVYEENLNKDLKFEGKTVVITGSLSR-K 603

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           R + +E +   GA VS+ +S+ TD +IVG+NPGSK +KA++L V+I+NEE+ 
Sbjct: 604 RKELEEELINNGAKVSSSVSKNTDFLIVGENPGSKYDKARELSVEILNEEEL 655


>gi|284931737|gb|ADC31675.1| DNA ligase [Mycoplasma gallisepticum str. F]
          Length = 715

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 218/748 (29%), Positives = 361/748 (48%), Gaps = 98/748 (13%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE   K+L+  E E       YY  S P + D  YD   R        +P    S     
Sbjct: 13  IEDLVKKLTKWEHE-------YYVLSNPSVSDEVYDNTYRTLLGYERKYPQYVLSY---S 62

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  ++    KV H    LSL   +N E+L  F   I +   K++DN   + LEPK
Sbjct: 63  PTQRVGSSISNKFIKVKHDYLMLSLGNCFNFEELLNFNENIAKI-SKQEDNP--YVLEPK 119

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++ Y  G    A  RGDG  GE V A I+ I TIP  ++  I +I+ +RGEVY+
Sbjct: 120 IDGLSISLIYLDGVLSEALTRGDGVFGESVIANIKTIKTIPLKINTTIKKIV-IRGEVYV 178

Query: 194 SKNDFLALN---DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           S  DF A+N   DE      K +AN RN ASG LR ++ +++  R LN F + +    E+
Sbjct: 179 SNQDFEAINASRDE-----DKKFANSRNYASGSLRNIDVSEVAKRKLNAFFYYIPNAYEL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + QY+++Q+++  GF V   ++  +    + +   E+++ ++ L Y IDG V K + F
Sbjct: 234 GFETQYQVIQQLKEWGFNVAKEIKLFSNIKELYTSLKELENNKNKLDYRIDGAVIKYNNF 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
              + +G  ++ P+W I++KFA  Q  T+L DI + +GRTG LT VA+L P+ + G++IT
Sbjct: 294 KDYEIIGYTSKFPKWAIAYKFAPTQVQTQLKDIILNVGRTGKLTFVAQLAPIELEGSIIT 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN +YI  L           DIR+ D V + +A E+IPKV+ + +++R  +A+   
Sbjct: 354 YATLHNLEYINDL-----------DIRINDYVYLIKAAEIIPKVIGVNLDKRPNNAKKLE 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP C   +V+   P+       +       C  +QL+ L ++ S+   NIEGL + 
Sbjct: 403 FDYNCPSCHQPLVK--KPEEVDWYCIYD-----QCKQKQLQYLIYYCSKPIMNIEGLSES 455

Query: 490 QLDFFFKS------------------------------EDPAFSIRIPADIFTLQRRQQT 519
            L  FF +                              E+  F +    DI+ L+R ++ 
Sbjct: 456 TLALFFNTKVNDVIRECNELITNQNVNEDLSLFKLLDNEEQTF-VNSVLDIYQLERYKEI 514

Query: 520 ----------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
                     S + ++    F D S   L +SIN+ +N  L R + +L I+++G   A+S
Sbjct: 515 IIKPWLKKGFSKSSLKYNFRFQDKSFDKLINSINESKNRELYRLLAALNIKYIGIATAKS 574

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           +A  Y        +I+ + +   +D++   R+  +  I A ++  F+ + +N   +E  L
Sbjct: 575 IANTY-------HDIDQLKSLTVEDYM---RLADISSITANSLFSFFSDEKNWELIEQ-L 623

Query: 630 KEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           K +S      I     + SS   +KK V TG+    +    ++   +      + +S+  
Sbjct: 624 KTLSINTKDEINNDLVDSSSIYYDKKFVITGSFSISRNDIIKKLSLKYKIKFVSGVSKNV 683

Query: 686 DIIIVGDNP-GSKLEKAQQLGVKIMNEE 712
           D ++ G++P   K+ +A+ L + I+ EE
Sbjct: 684 DFVLAGNSPTAKKINQAKVLNIPIIQEE 711


>gi|313678467|ref|YP_004056207.1| DNA ligase (NAD+) [Mycoplasma bovis PG45]
 gi|312950136|gb|ADR24731.1| DNA ligase (NAD+) [Mycoplasma bovis PG45]
          Length = 654

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 224/715 (31%), Positives = 367/715 (51%), Gaps = 73/715 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A++ + SL  +I+  +  YYQ +KP + D EYD      + +   +P+    + P   
Sbjct: 4   KNAKELIKSLVDKINQWNYEYYQLNKPSVSDLEYDKALWELEKLEKEYPEFVLDDSPTFK 63

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           L     E      K  H  P LSL K ++ +D++ FI  I +    +  N   F +EPK+
Sbjct: 64  LGSFASE---KFTKFIHKKPMLSLAKAYSYDDIKSFINNISKIVPAERIN---FNIEPKV 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y+KGK V A  RGDG  GEDV+  I  I +IP+++  N    +EVRGEV+IS
Sbjct: 118 DGLSIALHYKKGKLVKAVTRGDGTEGEDVTENIYQIKSIPKLI--NYLNDLEVRGEVFIS 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           K++F  +N+             RNAASG LR+L+ T +  R L+ F++ + +        
Sbjct: 176 KDNFKKINESNNFANA------RNAASGTLRQLDSTIVAKRNLSAFLYEVVEPEMHNINY 229

Query: 254 QYEMLQKMRCLGFPVN--NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           Q E L+ M+ L  P N  + V +       +S + E   I++ L YD DGLV K+++  +
Sbjct: 230 QNEALEFMKKLNIPTNPFSKVVEIEELEEAISDFAE---IKNKLDYDSDGLVIKLNDLQM 286

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            ++LG+ ++ P+  I+ K+  + AS+ ++DI   +GRTG +T +A + PV +    +  A
Sbjct: 287 WEKLGKTSKFPKHSIAFKYDVEVASSTIVDILTSVGRTGKITYIANIHPVILNQTSVRAA 346

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN ++IK +           +I + D V + +AGE+IPKV+ +  ++ + D   +   
Sbjct: 347 TLHNHNFIKDM-----------NININDEVNIIKAGEIIPKVISLKNSKNYVDY--YKKA 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S ++        + +    CT    C  + +  + HF SR+  NI GLG   +
Sbjct: 394 TNCPSCNSELIE------FEGIVDQFCTND-ECPEKNVNNIYHFASRNCMNIVGLGLSTV 446

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL--GFGDVSVTNLYDSINKRRNIS 549
             F+    P F I+   DIF+L +       K E IL   +G+  V N+ +SI   +N +
Sbjct: 447 KDFY----PKF-IKKIKDIFSLYKY------KSELILLPRYGEQKVDNILNSIESVKNKA 495

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR-VPLVGDII 608
             + +F+LGI+H+G   A+ ++    +Y NFA+ +       ND  LS ++    +G  I
Sbjct: 496 FSKVLFALGIKHIGQRAAKLISD---NYVNFAEIL-------NDSELSKLKSTKNIGPKI 545

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE---KNVSSEIENKKLVFTGTLQKIQRHK 665
            +++ E+  NP N   +  L      SI  +E   K +S+       V TGTL + + H 
Sbjct: 546 IESLTEYINNPLNKDLLIYL-----DSIFNYEGKTKAISNIFSGYSFVITGTLSEPRSHF 600

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  + +    VSA +S +T  ++ G   GSKLEKA +LGVK++NEEQF  LL+ 
Sbjct: 601 VK-IIEENSGSVSASVSGRTSYVLAGSEAGSKLEKAYKLGVKVINEEQFYKLLEH 654


>gi|166215830|sp|Q4A899|DNLJ_MYCH7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|144575353|gb|AAZ53640.2| DNA ligase [Mycoplasma hyopneumoniae 7448]
          Length = 692

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 219/743 (29%), Positives = 364/743 (48%), Gaps = 90/743 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74
           Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  P
Sbjct: 6   QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 65

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---NSIFFTLE 131
             K+G ++     KV HS P LSL K ++ E+L K        W KK      ++ F +E
Sbjct: 66  SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEK--------WAKKAREILKTVTFFVE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRG 189
           PKIDG  +++ Y+ G  + A  RGDG  GE+V      I    IP+   +N  E +EVRG
Sbjct: 118 PKIDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPK--KINYLEDLEVRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR---------------LNPTDITR 234
           E+YI  + F +L  E      K + NPRNAASGILRR               L      R
Sbjct: 176 EIYIDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFR 230

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           YL  F + L    +     Q++ +  +R LGF VN   ++ +    + ++ + +K  R  
Sbjct: 231 YLKSFFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDF 290

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L Y+IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T 
Sbjct: 291 LNYNIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTY 350

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A++EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++
Sbjct: 351 NAKIEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQII 399

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             + N  +P    FS    CP C S +V   N ++G       C     C    L+++ H
Sbjct: 400 GSVHN--YPKTN-FSIVKNCPKCNSELV---NSESG---LDQFCQNQF-CPEIILQKIVH 449

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN---ILGFG 531
           F S++A NIE L +++++ F +       I    DIF L+ + +    ++ N   +L   
Sbjct: 450 FCSKNALNIESLAQKRIEKFLEKG----LISSACDIFYLKDKLELIYERLSNKNQLLTKQ 505

Query: 532 DV-------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           +        S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +        
Sbjct: 506 NASQSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLD 565

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEK 641
            N++ + +D           G +I +++++++ N +N   +  +E +      +   ++ 
Sbjct: 566 FNLLKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQS 615

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           N  +         +G L K  R +    + + GA     +++KTD +++G + GSK+EKA
Sbjct: 616 NSWAS-----FAISGKLSK-PRDEYVRIIEESGASFHESVTKKTDFLLLGQSAGSKIEKA 669

Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724
           ++ G+KI+NE QF  L++    T
Sbjct: 670 KKAGIKIINEVQFFDLIKNSKKT 692


>gi|72080605|ref|YP_287663.1| DNA ligase [Mycoplasma hyopneumoniae 7448]
          Length = 693

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 219/743 (29%), Positives = 364/743 (48%), Gaps = 90/743 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74
           Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  P
Sbjct: 7   QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 66

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---NSIFFTLE 131
             K+G ++     KV HS P LSL K ++ E+L K        W KK      ++ F +E
Sbjct: 67  SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEK--------WAKKAREILKTVTFFVE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRG 189
           PKIDG  +++ Y+ G  + A  RGDG  GE+V      I    IP+   +N  E +EVRG
Sbjct: 119 PKIDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPK--KINYLEDLEVRG 176

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR---------------LNPTDITR 234
           E+YI  + F +L  E      K + NPRNAASGILRR               L      R
Sbjct: 177 EIYIDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFR 231

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           YL  F + L    +     Q++ +  +R LGF VN   ++ +    + ++ + +K  R  
Sbjct: 232 YLKSFFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDF 291

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L Y+IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T 
Sbjct: 292 LNYNIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTY 351

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A++EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++
Sbjct: 352 NAKIEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQII 400

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             + N  +P    FS    CP C S +V   N ++G       C     C    L+++ H
Sbjct: 401 GSVHN--YPKTN-FSIVKNCPKCNSELV---NSESG---LDQFCQNQF-CPEIILQKIVH 450

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN---ILGFG 531
           F S++A NIE L +++++ F +       I    DIF L+ + +    ++ N   +L   
Sbjct: 451 FCSKNALNIESLAQKRIEKFLEKG----LISSACDIFYLKDKLELIYERLSNKNQLLTKQ 506

Query: 532 DV-------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           +        S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +        
Sbjct: 507 NASQSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLD 566

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEK 641
            N++ + +D           G +I +++++++ N +N   +  +E +      +   ++ 
Sbjct: 567 FNLLKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQS 616

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           N  +         +G L K  R +    + + GA     +++KTD +++G + GSK+EKA
Sbjct: 617 NSWAS-----FAISGKLSK-PRDEYVRIIEESGASFHESVTKKTDFLLLGQSAGSKIEKA 670

Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724
           ++ G+KI+NE QF  L++    T
Sbjct: 671 KKAGIKIINEVQFFDLIKNSKKT 693


>gi|218678540|ref|ZP_03526437.1| NAD-dependent DNA ligase LigA [Rhizobium etli CIAT 894]
          Length = 274

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/269 (48%), Positives = 188/269 (69%)

Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           D V+V+RAG+VIP+++D+++ +R  +A  + FP  CP+C S  VR++N KTGK+ +  RC
Sbjct: 1   DTVIVQRAGDVIPQILDVVMEKRTAEAGSYEFPRTCPVCGSHAVREVNEKTGKMDSVRRC 60

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           TGG  C AQ  E LKHFVSR+AF+IEGLG +Q+DFFF++EDP+  IR   DIFTL++RQQ
Sbjct: 61  TGGFICRAQATEHLKHFVSRNAFDIEGLGSKQIDFFFENEDPSLQIRTAPDIFTLEKRQQ 120

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
            S TK+ENI GFG VSV  LY +IN+RR+I+L RFI++LGIRHVG   A+ LA+ Y +Y+
Sbjct: 121 QSLTKLENIDGFGKVSVGKLYAAINERRSIALHRFIYALGIRHVGETTAKLLARSYNTYE 180

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
            FA  +      + + W  L  +  +G+++A+A+VEFY+ PRNI  +  L+ EV+P+   
Sbjct: 181 AFATAMKEAAPLSGEAWNDLNAIEGIGEVVARAMVEFYKEPRNIEVINRLIGEVTPAEAE 240

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
                 S +  K +VFTG+L+K  R +A+
Sbjct: 241 QPVTTGSPVAGKTVVFTGSLEKFTRDEAK 269


>gi|300813320|ref|ZP_07093675.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512591|gb|EFK39736.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 664

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 209/712 (29%), Positives = 356/712 (50%), Gaps = 71/712 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PN 72
           QA +++  L +E++ +   YY   K +I D  YD        I     +L + E+    +
Sbjct: 2   QASEKMQKLVKELNRYGYYYYTLDKSLIDDKVYDR-------IYDELVNLEKEENIVLAD 54

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SI 126
            P  ++GG++  S  K  H  P  S+ K  + ++LR +I +   F +  +++       +
Sbjct: 55  SPTTRVGGQILKSFQKHKHLNPLYSMNKAQSFDELRDWIEKNKNFIENYNESHEDKLSEM 114

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              LE K DG  I + YE G    A  RG+G  GE +++ ++ I +IP  LS++   ++E
Sbjct: 115 ELILELKFDGLTINLTYEDGYLKMATTRGNGLIGEVITSQVKTINSIP--LSIDYKGLVE 172

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           ++GE  +     L   +E      +   N RNAA+G LR L+P +   R L  + + +  
Sbjct: 173 IQGEGLMP----LKSLEEYNKKASEKLKNARNAAAGALRNLDPKETKARNLTAYFYNVNY 228

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM   ++  GF V+    +  +F  +    N +  IR  LP  IDG+  K
Sbjct: 229 IEGKNFKDDVEMKAFLKSQGFLVSKYNYKVKSFKDVQEKINYIADIRKDLPIQIDGVTIK 288

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +++F  ++ L    + PRW I++KF  + A ++LL++   +GR+  +TP A +EPV I G
Sbjct: 289 INDFKTREILSFTQKFPRWSIAYKFEAEIAESKLLEVVWNVGRSSKVTPSAIIEPVEIDG 348

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             I  ATL+N D I             + +R+   +L++R+ +VIP+++ ++ +    D 
Sbjct: 349 VTIKRATLNNFDDI-----------NRKKLRLNSNILIRRSNDVIPEILGVLPS----DE 393

Query: 426 QPFSF--PSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFN 482
           + F+   P  CP C + + +D           H  C   L+C  Q + RL HF SRDA N
Sbjct: 394 KTFAIKRPEVCPACGAHLFQD---------GVHIFCPNTLSCRPQLVSRLVHFASRDAMN 444

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I G  ++ ++ F    D      IP DI+ L   +     K+E   GF +    NL ++I
Sbjct: 445 INGFSEKTIEKFM---DELGLKEIP-DIYNL---KYDDIIKLE---GFKEKKTKNLLEAI 494

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +N  L  FI+++GI +VG + AR LAK+Y ++  F++      A  +D    LI V 
Sbjct: 495 ENSKNPFLSNFIYAIGIANVGIKTARDLAKHYKNFMAFSK------ASFDD----LIEVG 544

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G I A+ I+ F+++      ++ L       +     N   + E K +V TG+L + +
Sbjct: 545 DIGPITAKEIINFFEDDHIKDGLQKLFSYGIDVVYEENLNKDLKFEGKTVVITGSLSR-K 603

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           R + +E +   GA VS+ +S+ TD +IVG+NPGSK +KA++L V+I+NEE+ 
Sbjct: 604 RKELEEELINNGAKVSSSVSKNTDFLIVGENPGSKYDKARELSVEILNEEEL 655


>gi|229828351|ref|ZP_04454420.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM
           14600]
 gi|229792945|gb|EEP29059.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM
           14600]
          Length = 675

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 206/706 (29%), Positives = 351/706 (49%), Gaps = 61/706 (8%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           +I+YH D YY   K  I D EYD L ++  A     PD  R   P+ P  KIGG      
Sbjct: 12  QINYHMDLYYNQDKTEISDYEYDQLMQQLKAAEAEHPDWVR---PDSPSQKIGGTTKREA 68

Query: 87  -FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
             KV H++P LS+E +++ + +  ++ ++    Q+   ++IF ++E KIDG  +T+RY K
Sbjct: 69  GVKVEHNVPMLSIEDVFDFQSVIDWVKKV----QEMHPDAIF-SVEQKIDGLSMTLRYRK 123

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G+   A  RGDGH GEDV+   RAIP +P  L +  P  +E+RGEVY++++ F A N   
Sbjct: 124 GRLELAETRGDGHIGEDVTQNARAIPQVPDKLPITDP-YLELRGEVYMTRDRFEAYNARQ 182

Query: 206 IAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
               +   ANPRN A+G LR+L+P     R L  F+  +      F + Q + L ++  +
Sbjct: 183 EKDEKPLAANPRNLAAGTLRQLDPGITAKRGLALFIFNVQDGEPHFMRSQLDNLDRLSAM 242

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G PV    R A+    +++   E+  +R  L YDIDG V K+D+ + +K     A+    
Sbjct: 243 GLPVTYHKR-ADNAKEVIAAIEEIGKMRDQLGYDIDGAVVKIDQIAYRKDFPAGAKYSAG 301

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL------ITNATLHNEDY 378
            I++K+  ++    +  I + +GRTG LT   +   V  GG        ++ ATLHN+DY
Sbjct: 302 HIAYKYPPEERVVEMDQILVDVGRTGKLTFTGQFHDVKTGGPARLCGTSVSRATLHNQDY 361

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+ +            I +G    + ++GE+IPK+   +   + P A  F  P FCP+C 
Sbjct: 362 IRQM-----------KIGIGGHYKLFKSGEIIPKLNGCV---KEPKAV-FKAPQFCPVCG 406

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
                +L  + G   A  RC    +C AQ    + +F  R   +I GLG+  +D   + +
Sbjct: 407 E----ELEQEEG--TADIRCVNP-SCPAQISRTIAYFAGRSCMDIAGLGQTLVDALCQEK 459

Query: 499 ---DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                 F +    DI+ L+  + +  ++   ILG  + +   +  +I   ++    R + 
Sbjct: 460 ITGSETFYLTSYVDIYRLREHRDSLISR--GILG-KEKNTDKILAAIEDSKSQRPTRLLA 516

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR+VG   A +L   Y        ++ +++    +D   L  +P +G+  A  IV F
Sbjct: 517 GLGIRNVGLSTAAALMAVY-------PDLMDLMHAGFED---LQGIPDIGEKTAADIVHF 566

Query: 616 Y--QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +  ++ R + A     + +  ++   E+  +  +    +V TG L  ++R +A+  + + 
Sbjct: 567 FAHEDKRRMMAD---FRALGLTMRMPEEEKTEALAGLTIVVTGKLPGMERSEAKALIEKN 623

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   +  +S KTD ++ G+  GSKL+KA+ LG+ +++EE    L++
Sbjct: 624 GGKCTGSVSGKTDYLLAGEAAGSKLDKAKSLGIPVIDEEGLKALIE 669


>gi|297196402|ref|ZP_06913800.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720877|gb|EDY64785.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 715

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 210/734 (28%), Positives = 342/734 (46%), Gaps = 103/734 (14%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY+  +  + D  YD L R   A     PD      P  P  K+ G   ++   V H++
Sbjct: 34  AYYETGESTLDDDAYDRLVRGIAAYEQEHPD---ETSPASPTGKVAGGAVVA-GDVPHTV 89

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL+ +++ E L  +   + R      +    +++EPK+DG  +  RYE+G       
Sbjct: 90  PMLSLDNVFSAEQLVAWTASVERRTGPPVEE---WSVEPKLDGLAVAARYEEGALTRLIT 146

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG +GEDVS  I  I  +PR L+   P  +E+RGEV +++  F   N   +  G  P+
Sbjct: 147 RGDGTAGEDVSHAIGTIVGLPRTLAE--PVTLEIRGEVLMTEEQFERANTVRVEHGGAPF 204

Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGL------GK--TSEIFAKGQYEMLQKMRCLG 265
           ANPRN A+G LR  +    T  + FF +G       G+  T  +   G   +++ +  LG
Sbjct: 205 ANPRNGAAGTLRAKDRA-YTVEMTFFGYGALAVPASGEELTGRLGEWGHGRIMRYVADLG 263

Query: 266 FPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
               +      R   T   I +  +E+ + R  LP+ IDG+V K D  + Q   G  +R+
Sbjct: 264 VHTADSTAVAPRVLTTTEAIQARIDEIAAARPGLPFGIDGIVIKADSAADQAAAGFGSRA 323

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW +++K    +  T LL ++  +GRTGI+ P A LEPV I G+ +T ATLHN      
Sbjct: 324 PRWAVAYKLPAVEKVTTLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVTYATLHN------ 377

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                 + R  RD+R GD+V+V +AG++IP+V   + + R    QP  FP  CP C S +
Sbjct: 378 ---PADITR--RDLRTGDKVMVYKAGDIIPRVEAPVAHLRTGAEQPVVFPEVCPQCGSEI 432

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
             D + +        RC  G  C    +  + +   RD  +IEGLG  ++         A
Sbjct: 433 --DTSEQR------WRCVRGRDC--HVVASVSYAAGRDQLDIEGLGVTRVVQLVD----A 478

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIFSLG 558
             +R  AD+FTL R         E +LG    G+ S  NL  +I+  R   L R   +LG
Sbjct: 479 GLVRDLADLFTLTR---------EQLLGLERMGETSTDNLLAAIDTARTRPLSRVFCALG 529

Query: 559 IRHVGAEIARSLAKYYLSYQNF-------AQEINNIIAHNNDDWLSLIR--VPLVGDIIA 609
           +R  G  ++R +A+Y+ + ++         Q+++ I        ++ +    PL+  ++A
Sbjct: 530 VRGTGRSMSRRIARYFAAMEHIRAADAETLQQVDGIGVEKARTVVAELEELAPLIDRLVA 589

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL----------------- 652
             +        N+    A     +P   R E    +E E +                   
Sbjct: 590 AGV--------NMTEPGA-----TPPAARAEDGAGAEGEGQDTGAGASTAGGAGPLSGMT 636

Query: 653 -----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
                  TG L+K+ R++  E + + G   S+ +S++T +++ G+N GSK +KA+QLG +
Sbjct: 637 VVVTGAMTGALEKLSRNQMNELIERAGGKSSSSVSKRTSLLVAGENAGSKRDKAEQLGTR 696

Query: 708 IMNEEQFLFLLQQY 721
           I   ++F  ++  +
Sbjct: 697 IATPDEFAAIVADF 710


>gi|325846528|ref|ZP_08169443.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481286|gb|EGC84327.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 668

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 207/707 (29%), Positives = 351/707 (49%), Gaps = 78/707 (11%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGG 80
           E++YH   YY   +P++ D EYD L          + +L   E+  G      P  ++GG
Sbjct: 18  ELNYH---YYTLDEPMVSDGEYDKL----------YDELRELENSTGYINAFSPTQRVGG 64

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKDD--NSIFFTLEPKI 134
            +     K  H     S +K  NI+ L+ +I R  +    +    DD    + F  E K 
Sbjct: 65  TILDKFEKHFHITRLYSQDKSQNIDQLKDWIIRTKKLRDQYNNSHDDKLEKLEFLTEYKF 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + YE G    A+ RG+G  GEDV+  +  IPTIP    +    ++E++GE  + 
Sbjct: 125 DGLTINLTYENGLLKTASTRGNGIVGEDVTKQVLTIPTIPT--KIKEKSLLEIQGEAVMP 182

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
            +     N+E       P  N RNAA+G +R L+ +    R L  + + +   S  F K 
Sbjct: 183 LSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTRKRNLKAYFYQISTNSLDF-KT 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           + + L  +     PV    +    F  IV   + +K  R  +    DG+V KV++   Q+
Sbjct: 238 EEDKLNFLEEQKLPVYPYKKLIKNFDEIVKEIDYIKEERHHIDVLTDGVVIKVNDVKTQE 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   + PRW I++K+  ++ +T+LLD+   +GRTG +TP A LEPV+  G  +  ATL
Sbjct: 298 VLGYTNKFPRWSIAYKYDPEEYTTKLLDVVWNVGRTGKVTPSAILEPVDFSGVTVQRATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           +N D          ++R  + +++G +V ++R+ +VIP+++  +V+E   +      P+ 
Sbjct: 358 NNYD---------DILR--KKVKIGSQVFIRRSNDVIPEILG-VVDENQENTVEIKKPTK 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           CP C S ++             H  C   ++C+ Q   R+ HF SRDA +IEGL ++ ++
Sbjct: 406 CPYCHSELIEG---------NVHIYCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTVE 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F    D    I+   D++ L+         + ++  F +    NL  +I   +   L  
Sbjct: 457 LFINELD----IKEIYDLYDLKYED------LIDLESFKEKKTNNLLQAIENSKECDLNH 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI+++GI +VG + AR LA+ Y S +N         A  +D    L+ V  +G+  +  I
Sbjct: 507 FIYAIGIPNVGVKTARDLAEKYKSLENLRN------AKEDD----LVEVEDIGEKTSHDI 556

Query: 613 VEFYQNPRNIC-AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           VEF+ N +NI  +++ LL++        E  VS+ +E  K+V TG+++  +R+  ++ + 
Sbjct: 557 VEFF-NDKNIKESIDKLLEKGIKIKEIEESEVSNFLEGMKIVITGSIENYKRNDIKKLIL 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFL 717
                V++ +S+ TD+++ G+ PGSK EKA QLG+K++ NEE F F+
Sbjct: 616 DHNGDVTSSVSKNTDLVLCGEKPGSKKEKADQLGIKVLENEELFEFI 662


>gi|291519153|emb|CBK74374.1| DNA ligase, NAD-dependent [Butyrivibrio fibrisolvens 16/4]
          Length = 651

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 206/693 (29%), Positives = 345/693 (49%), Gaps = 56/693 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL-FKVTHSI 93
           YY   +P I D EYD L  +  A     P+      P+ P  KIGG        KVTH +
Sbjct: 4   YYNDDEPEITDFEYDQLMLQLKAAEKEHPEWVT---PDSPTQKIGGVAKREAGVKVTHDV 60

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG-----KF 148
           P LS+E ++  E++ +++ ++     K       F++E KIDG  +T+RYEK      K 
Sbjct: 61  PMLSIEDVFTKEEVVEWVKKV-----KAVHPDARFSVEAKIDGLSMTLRYEKDTTGKLKL 115

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
             A  RGDG  GEDV+     IP + R L L   + +++RGEVY+S  DF   N++    
Sbjct: 116 KLAETRGDGIVGEDVTENALVIPDVNRYLDLPY-DNLQLRGEVYMSHEDFDRYNEDQELK 174

Query: 209 GRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
           G K  ANPRN A+G LR+L+  +IT  R L  FV  + +  +       + L  +     
Sbjct: 175 GGKLAANPRNLAAGTLRQLD-ANITKQRGLKMFVFNVQQGPDELTVSHCKGLDILSEHKV 233

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           PV    R  +    I++  +E+   R    +DIDG V K+D+ + +      A+     I
Sbjct: 234 PVVYH-RICDNADEILNVIDEIGEKREEFEFDIDGAVVKIDQVAYRADFSTSAKYTNGHI 292

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K+  ++  T+LLD+++ +GRTG + P A  EP+ + G  ++ ATLHN+D+I  L    
Sbjct: 293 AYKYPPEEKETKLLDVELSVGRTGRVNPTAIFEPIRLCGTTVSRATLHNQDFIDEL---- 348

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                  +I +GD ++V ++GE+IPK+ ++  ++R      +  P+ CP C   V RD +
Sbjct: 349 -------NIGIGDTIVVYKSGEIIPKIKEVKQDKRPAGTTTYKIPNICPACGGPVSRDAD 401

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ-LDFFFKSEDPAFSIR 505
                  A  +CT   +C AQ    + +FVSRDA +I G G+   +D   +       I+
Sbjct: 402 ------TADMKCTNP-SCPAQLERHIINFVSRDAMDIRGFGEVYIIDLVRRG-----YIK 449

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
             ADI++L+ ++       E I+G  + +   L   I   +     +     GI +VG  
Sbjct: 450 DIADIYSLKDKRDELIE--EGIIG-KEKNTDKLLGVIESSKENDAVKLFTGFGIPNVGKA 506

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A++L   +       ++I  I+  + ++   L++V  +G+I A++I ++  +P NI  +
Sbjct: 507 AAKALLGQF-------KDIEKIMELSEEE---LMQVNDIGEISAKSIYDYLHDPVNIDII 556

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
             L       +   ++  + ++     V TGTL  + R +AQE +   G   +  +S+KT
Sbjct: 557 GRLKAAGVNMVEEEKEGATDKLSGLTFVITGTLPTMGRKEAQELIELNGGKCAGSVSKKT 616

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             ++ G+  GSKL+KA  LGV +++EE  L L+
Sbjct: 617 SYLVAGEAAGSKLDKANSLGVTVLDEEGLLSLI 649


>gi|227485017|ref|ZP_03915333.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172]
 gi|227237014|gb|EEI87029.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172]
          Length = 667

 Score =  283 bits (725), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 200/703 (28%), Positives = 348/703 (49%), Gaps = 64/703 (9%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           E+ YH   YY   KP++ D EYD L  +   +      +      N P N++GG++    
Sbjct: 16  ELDYH---YYTLDKPLVSDGEYDKLYNQLIKLQKNLAYVPE----NSPTNRVGGQILDKF 68

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEPKIDGTMIT 140
            K  H    LS +K  + ++++++I R  R  +  +  S      + F +E K DG  I 
Sbjct: 69  EKHYHLTRLLSQDKAQSYDEIKEWIERCKRLKEAYESTSGERLPNLEFVMEYKFDGLTIN 128

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YE G    AA RG+G  GE V A    I +IP   ++    ++E++GE  +  ++   
Sbjct: 129 LTYEDGILKTAATRGNGIVGEQVKAQAETIRSIP--FTIKEKSLLEIQGEALMPLSELDR 186

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
            N E          N RNAA+G +R L+  +   R+L  + + +  T+ I  K + EML 
Sbjct: 187 YNKE----NETQLKNARNAAAGAIRNLDTKETAKRHLTAYFYAV-PTNSINFKNEEEMLS 241

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            ++ +   V+   ++  +   I++    +K  R TL    DG+V K+++   Q+ LG   
Sbjct: 242 FLKEMKLNVHPYHKKVTSLDEIINELERIKEERKTLDVLTDGVVIKINDKKTQEVLGVTE 301

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           + PRW I+ KF  ++ +T+LLD+   +GRTG +TP A LEPV+  G  ++ ATL+N D I
Sbjct: 302 KFPRWSIAFKFEPEEFTTKLLDVIWNVGRTGKVTPSAILEPVDFSGVTVSRATLNNYDDI 361

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           +            + +++G  V ++R+ +VIP+++  +V+E  P       P+ CP C S
Sbjct: 362 E-----------RKKVKIGSDVFIRRSNDVIPEILG-VVDENQPGTIKIEKPTHCPYCHS 409

Query: 440 RVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            ++++           H  C   ++C+ Q L R++H+ SR+A +IEGL ++ +    +  
Sbjct: 410 ELIQE---------KVHIVCPNSISCTPQLLARMEHYASRNAMDIEGLSEKTIGQLIEE- 459

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
               SI+   DI+ L   +     K+E    FG     NL  SI+  +N  L+ FI+++G
Sbjct: 460 ---LSIKEIYDIYDLTYDE---LIKLER---FGHKKAKNLLASIDNSKNRDLDAFIYAIG 510

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I +VG   AR LA  + S+              N     LI +  +G+I  + IVEF+ +
Sbjct: 511 IPNVGERTARDLANKFKSFDKL----------RNATVDELIEIDDIGEITGENIVEFFHD 560

Query: 619 PRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              + +++ LL K ++ +  R   + S +++    V TGT+    R   ++ +   GA V
Sbjct: 561 KNIVESIDILLSKGINLNNPRENTSDSKKLDGINFVITGTIDGYNRDDIKKMLEDNGANV 620

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              +S+ TDI++ G+  GSK +KA +L V+I  +E+    L +
Sbjct: 621 RGSVSKNTDIVLAGEKAGSKKDKAIELNVEIYEDEKLYSFLSE 663


>gi|294660617|ref|NP_853482.2| DNA ligase [Mycoplasma gallisepticum str. R(low)]
 gi|298286803|sp|Q7NAF8|DNLJ_MYCGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|284812280|gb|AAP57050.2| DNA ligase [Mycoplasma gallisepticum str. R(low)]
 gi|284930979|gb|ADC30918.1| DNA ligase [Mycoplasma gallisepticum str. R(high)]
          Length = 715

 Score =  283 bits (724), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 218/747 (29%), Positives = 360/747 (48%), Gaps = 96/747 (12%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE   K+L+  E E       YY  S P + D  YD   R        +P    S     
Sbjct: 13  IEDLVKKLTKWEHE-------YYVLSNPSVSDEVYDNTYRTLLGYERKYPQYVLSY---S 62

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  ++    KV H    LSL   +N E+L  F   I +   K++DN   + LEPK
Sbjct: 63  PTQRVGSSISNKFIKVKHDYLMLSLGNCFNFEELLNFNENIAKI-SKQEDNP--YVLEPK 119

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++ Y  G    A  RGDG  GE V A I+ I TIP  ++  I +I+ +RGEVY+
Sbjct: 120 IDGLSISLIYLDGVLSEALTRGDGVFGESVIANIKTIKTIPLKINTTIKKIV-IRGEVYV 178

Query: 194 SKNDFLALN---DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           S  DF A+N   DE      K +AN RN ASG LR ++ +++  R LN F + +    E+
Sbjct: 179 SNQDFEAINASRDE-----DKKFANSRNYASGSLRNIDVSEVAKRKLNAFFYYIPNAYEL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + QY+++Q+++  GF V   ++  +    + +   E+++ ++ L Y IDG V K + F
Sbjct: 234 GFETQYQVIQQLKEWGFNVAKEIKLFSNIKELYTSLKELENNKNKLDYRIDGAVIKYNNF 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
              + +G  ++ P+W I++KFA  Q  T+L DI + +GRTG LT VA+L P+ + G++IT
Sbjct: 294 KDYEIIGYTSKFPKWAIAYKFAPTQVQTQLKDIILNVGRTGKLTFVAQLAPIELEGSIIT 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN +YI  L           DIR+ D V + +A E+IPKV+ + +++R  +A+   
Sbjct: 354 YATLHNLEYINDL-----------DIRINDYVYLIKAAEIIPKVIGVNLDKRPNNAKKLE 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP C   +V+   P+       +       C  +QL+ L ++ S+   NIEGL + 
Sbjct: 403 FDYNCPSCHQPLVK--KPEEVDWYCIYD-----QCKQKQLQYLIYYCSKPIMNIEGLSES 455

Query: 490 QLDFFFK-------------------SEDPAF----------SIRIPADIFTLQRRQQT- 519
            L  FF                    SED +            +    DI+ L+R ++  
Sbjct: 456 TLALFFNTKVNDVIRECNELITNQNVSEDLSLFKLLDNEEQTFVNSVLDIYQLERYKEII 515

Query: 520 ---------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
                    S + ++    F + S   L +SIN+ +N  L R + +L I+++G   A+S+
Sbjct: 516 IKPWLKKGFSKSSLKYNFRFQEKSFDKLINSINESKNRELYRLLAALNIKYIGIATAKSI 575

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A  Y        +I+ +     +D++   R+  +  I A ++  F+ + +N   +E  LK
Sbjct: 576 ANTY-------HDIDQLKNLTVEDYM---RLADISSITANSLFSFFSDEKNWELIEQ-LK 624

Query: 631 EVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
            +S      I     + SS   +KK V TG+    +    ++   +      + +S+  D
Sbjct: 625 TLSINTKDEINNDLVDSSSIYYDKKFVITGSFSISRNDIIKKLSLKYKIKFVSGVSKNVD 684

Query: 687 IIIVGDNP-GSKLEKAQQLGVKIMNEE 712
            ++ G++P   K+ +A+ L + I+ EE
Sbjct: 685 FVLAGNSPTAKKINQAKVLNIPIIQEE 711


>gi|320007473|gb|ADW02323.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331]
          Length = 698

 Score =  283 bits (724), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 343/704 (48%), Gaps = 76/704 (10%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D  YD L R   A     P       P G +   GG ++     V H++P LSL+ +++ 
Sbjct: 39  DDAYDRLVRAIAAYEEEHPQEVLDASPTGKVA--GGAVS---GDVPHTVPMLSLDNVFSA 93

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164
           E   +F+T      ++       +++EPK+DG  +  RY +G       RGDG +GEDVS
Sbjct: 94  E---QFVTWTASVERRIGRPVAAWSVEPKLDGLAVAARYRQGVLEQLITRGDGTAGEDVS 150

Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224
             I  +  +P    L  P  +E+RGE+ ++   F A N      G  P+ANPRN A+G L
Sbjct: 151 HAIGTVLGLPE--RLGAPATLEIRGEILMTTEQFEAANAVRTEHGAAPFANPRNGAAGTL 208

Query: 225 RRLN-PTDITRYLNFFVHGL------GKTSEIFAKGQY-EMLQKMRCLGF--PVNNGV-- 272
           R  + P  +   + FF +G       G+ ++  A   + E+L+ +  +G     +  V  
Sbjct: 209 RAKDRPYRV--EMTFFAYGALALPDSGELTDTLAGLPHSEVLEYVAGIGVHTAADTAVAP 266

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R   T   + +   ++ ++R++LP+ IDG+V K D  + Q+  G   R+PRW I++K   
Sbjct: 267 RTVTTVEEVQAGVEDIAALRASLPFGIDGIVIKADLAADQRDAGSGTRAPRWAIAYKLPA 326

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            +  TRLL ++  +GRTGI+ P A LEPV I G+ ++ ATLHN            + R  
Sbjct: 327 VEKVTRLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVSYATLHN---------PADITR-- 375

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           RD+R+GD V+V +AG++IP++   + + R  + QP  FP  CP C S +  D + +    
Sbjct: 376 RDLRLGDHVMVYKAGDIIPRIEAPVAHLRTGEEQPIEFPEACPRCGSEI--DASEQR--- 430

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
               RCT G  C  + +  + +   RD  +IEGLG  ++         A  ++  AD+FT
Sbjct: 431 ---WRCTRGRDC--RLVASISYAAGRDQLDIEGLGTTRVVQLVD----AGLVQDFADLFT 481

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L+R Q  S  ++      G+ S  NL  +I    +  L R   +LG+R  G  ++R +A+
Sbjct: 482 LERDQLLSLDRM------GETSTDNLLAAIGAAASRPLSRVFCALGVRGTGRSMSRRIAR 535

Query: 573 YYLSYQNFA-------QEINNIIAHNNDDWLSLIR-----VPLVGDIIAQAI---VEFYQ 617
           ++ S    A       Q+++ I     +   +++R      PL+G ++A  +        
Sbjct: 536 HFASMDRIAAADVEALQQVDGI---GKEKAAAVVRELQELAPLIGKLVAAGVNMTEPGAT 592

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            P    A +    E S + G     ++  +       TG L+K+ R++  E + + G   
Sbjct: 593 PPPEPGAAQEGEAEESATSGLPLAGMTVVVTG---AMTGALEKLSRNEMNELIERAGGKS 649

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           S+ +S++T +++ G+  GSK  KA+ LGV+I   E+F  L+Q +
Sbjct: 650 SSSVSKRTSLLVAGEKAGSKRTKAEDLGVRIAAPEEFAELVQAH 693


>gi|282864620|ref|ZP_06273675.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
 gi|282560559|gb|EFB66106.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
          Length = 709

 Score =  283 bits (724), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 206/712 (28%), Positives = 340/712 (47%), Gaps = 79/712 (11%)

Query: 42  IILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKI 101
           ++ D  YD L R   A     P    +  P G   K+ G    ++  V H++P LSL+ +
Sbjct: 43  LLDDDAYDRLARGIAAYEAEHPQEVLAASPTG---KVAG--GAAVGDVPHTVPMLSLDNV 97

Query: 102 WNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGE 161
           ++ E   +F+T      ++       +++EPK+DG  +  RY++G+      RGDG +GE
Sbjct: 98  FSAE---QFVTWTASVERRIGRPVAAWSVEPKLDGLAVAARYQQGRLDRLITRGDGTAGE 154

Query: 162 DVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAAS 221
           DVS  I  +  +P    LN P  +EVRGE+ ++   F A N    A G  P+ANPRN A+
Sbjct: 155 DVSHAIGTVLGLPE--RLNEPATLEVRGEILMTDEQFDAANAARTAHGAAPFANPRNGAA 212

Query: 222 GILR-RLNPTDITRYLNFFVH------GLGKTSEIFAK-GQYEMLQKMRCLGF--PVNNG 271
           G LR +  P  +   + FF +      G G ++E        E+L+ +  LG     +  
Sbjct: 213 GTLRAKDRPYRV--EMTFFAYAALPLPGSGTSAETLTGLPHSEVLRHVAGLGVRTAADTA 270

Query: 272 V--RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
           V  R A T   + +   ++   R+TLP+ IDG+V K D  + Q+  G   R+PRW I++K
Sbjct: 271 VAPRTAGTVEEVQAGVEDIAGQRATLPFGIDGIVIKADLAADQRDAGTGTRAPRWAIAYK 330

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
               +  TRLL ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I          
Sbjct: 331 LPAVEKVTRLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADIT--------- 381

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
              RD+R+GD+V+V +AG++IP++   + + R  + +P  FP  CP C S +  D + + 
Sbjct: 382 --RRDLRLGDQVMVYKAGDIIPRIEAPVAHLRTGEERPIEFPQSCPQCGSEI--DTSEQR 437

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
                  RC  G  C  + +  + +   RD  +IEGLG  ++         A  +   AD
Sbjct: 438 ------WRCVRGRDC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADFAD 485

Query: 510 IFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           +FTL+R         E +LG    G+ S  NL  ++   R+  L R   +LG+R  G  +
Sbjct: 486 LFTLER---------EQLLGLERMGETSTDNLLAAVETARSRPLSRVFCALGVRGTGRSM 536

Query: 567 ARSLAKYYLSYQNFA-------QEINNIIAHN--NDDWLSLIRVPLVGDIIAQAI--VEF 615
           +R +A+++ +    A       Q ++ I                PL+  ++A  +   E 
Sbjct: 537 SRRIARHFATMDRIAAADTEALQRVDGIGKEKAAAVVAELAELAPLIAKLVAAGVNMTEP 596

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL------VFTGTLQKIQRHKAQEY 669
              P      EA  +E + + G  E    + +    +        TG L+K+ R++  E 
Sbjct: 597 GATPPPDPGTEA-DEERAGAEGVSEGAGGTGLPLDAMTVVVTGAMTGVLEKLSRNEMNEL 655

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           + + G   S+ +S++T +++ G+  GSK  KA+ LGV+I   ++F  L+  +
Sbjct: 656 IERAGGKASSSVSKRTSLLVAGEKAGSKRTKAEGLGVRIATPDEFAELVGSF 707


>gi|254673676|emb|CBA09270.1| DNA ligase [Neisseria meningitidis alpha275]
          Length = 423

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 167/412 (40%), Positives = 242/412 (58%), Gaps = 33/412 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L    +Y    YY    P + D+EYD L R  +A+    P+L     P+ P  ++
Sbjct: 31  RHLTDLLNRYAYE---YYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQRV 84

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEP 132
           GGE      +V H +P LSL   ++ +D         +Y F Q+     D  +  + +EP
Sbjct: 85  GGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEP 144

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K DG  I++ Y  G  + AA RGDG +GEDV+  I+ +  IP R+   N PE+IEVRGEV
Sbjct: 145 KFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEV 204

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249
            + K DF ALN      G+KP+ANPRNAA+G LR+L+ + IT  R L+FF + + +    
Sbjct: 205 LMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGG 263

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYK 305
           F A+   + L   + LGF + NG      F  I   +++Y  M+  R  LPY+IDG+V K
Sbjct: 264 FVAEEHIQELAYFQALGFSLPNG--NFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMVVK 321

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +GG
Sbjct: 322 VNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGG 381

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
             +TNATLHN+D         +V R  +D+RVGD V+V+RAG+VIP+VV +I
Sbjct: 382 VTVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVI 422


>gi|203284458|ref|YP_002222198.1| DNA ligase [Borrelia duttonii Ly]
 gi|254781262|sp|B5RMA6|DNLJ_BORDL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|201083901|gb|ACH93492.1| DNA ligase [Borrelia duttonii Ly]
          Length = 669

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 207/706 (29%), Positives = 355/706 (50%), Gaps = 67/706 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + E+ SL   I   D  YY  S P + D  YD    R   + + +P+    + P     K
Sbjct: 6   KDEILSLRDAIKKWDREYYVDSSPTVGDVTYDKALLRLQYLENRYPEYKTLDSPTL---K 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL----EPK 133
            G ++     +V HS P LSL+K +++++L  ++ ++       + +++ F +    EPK
Sbjct: 63  FGSDLLNDFKEVEHSYPILSLDKAYDVKELLLWVEKM-----SLEGSNLGFDMGISAEPK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEV 191
           IDG  I + Y+ G    A  RGDG  G +V   +R I  +P    L I E +E+  RGE+
Sbjct: 118 IDGCSIVLYYKDGILEKALTRGDGRFGNNVIENVRTIKNVP----LCIGERVELVLRGEI 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
           YI+K DFL +N  +       Y N RN  SGILRR+N  ++  + L+ FV+ +  +S + 
Sbjct: 174 YITKKDFLKINHTL----DDSYINARNLTSGILRRINSREVVNFPLDIFVYDILYSS-LE 228

Query: 251 AKGQYEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               ++   K++  GF +N   +     N    I++Y  E++  R    Y+IDG+V KVD
Sbjct: 229 LNTNHDAFDKLKHFGFKLNPFCKFFCGKNLGENIINYVKEIEEQRERFEYEIDGVVLKVD 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F L+  LG  +  P+W I++KF   +A ++++DI +Q+GR+G +TPVA +E V I GA 
Sbjct: 289 DFRLRDVLGYTSHHPKWSIAYKFESLRAVSKVIDIVVQVGRSGKITPVANIEKVLIAGAF 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           IT+A+LHN+DYI   D+ G        + V D V + R G+VIP  V+++V +       
Sbjct: 349 ITSASLHNQDYI---DSIG--------LNVKDVVAISRRGDVIP-AVELVVEKLS--VGN 394

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P++CP C+  ++++          AH     + C  + +  +K+F S+   NI GL 
Sbjct: 395 FKIPNYCPSCKKSLIKE---------GAHLFCVNIHCPLKIMGHIKYFCSKKCMNIVGLS 445

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++F F        I    D++T          ++  + GF    V  L  SI + +N
Sbjct: 446 EKTIEFLFNMN----FISSEIDLYTFD------FDRLIGLKGFNFKRVNKLKRSIEESKN 495

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              ++ + ++GI+ +G      L     +  +F   I+ +   N +  + L+ +  +G+ 
Sbjct: 496 RPFKKLLLAMGIKDLGINTILLLIN--NNLNSF-DAISLLCQDNKNALVKLLDIKGIGER 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRH 664
           IA  I+  + N + I       K +   +     N    SS +  KK   TG+  +  RH
Sbjct: 553 IAFNIIRAF-NDKIILDKFNFFKGLGFKMQEDSINCVVDSSFLFGKKFCITGSFDEYPRH 611

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
              + +T+ GA+ ++ +SR  D ++VG +PG KL+KA  LG+KI++
Sbjct: 612 VLIDKITKKGAIFNSSVSRYLDFLLVGKSPGLKLKKANNLGIKILS 657


>gi|203287992|ref|YP_002223007.1| DNA ligase [Borrelia recurrentis A1]
 gi|254781265|sp|B5RPQ2|DNLJ_BORRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|201085212|gb|ACH94786.1| DNA ligase [Borrelia recurrentis A1]
          Length = 669

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 205/706 (29%), Positives = 355/706 (50%), Gaps = 67/706 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + E+ SL   I   D  YY  S P + D  YD    R   + + +P+    + P     K
Sbjct: 6   KDEILSLRDAIKKWDREYYVDSSPTVGDVTYDKALLRLQYLENRYPEYKTLDSPTL---K 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL----EPK 133
            G ++     ++ HS P LSL+K +++++L  ++ ++       + +++ F +    EPK
Sbjct: 63  FGSDLLNDFKEIEHSYPILSLDKAYDVKELLLWVEKM-----SLEGSNLGFDMGISAEPK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEV 191
           IDG  I + Y+ G    A  RGDG  G +V   +R I  +P    L I E +E+  RGE+
Sbjct: 118 IDGCSIVLYYKDGILEKALTRGDGRFGNNVIENVRTIKNVP----LCIGERVELVLRGEI 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
           YI+K DFL +N  +       Y N RN  SGILRR+N  ++  + L+ FV+ +  +S + 
Sbjct: 174 YITKKDFLKINHTL----DDSYINARNLTSGILRRINSREVVNFPLDIFVYDILYSS-LK 228

Query: 251 AKGQYEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               ++   K++  GF +N   +     N    I++Y  E++  R    Y+IDG+V KV+
Sbjct: 229 LNTNHDAFDKLKHFGFKLNPFCKFFCGKNLGENIINYVKEIEEQRERFEYEIDGVVLKVN 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F L+  LG  +  P+W I++KF   +A ++++DI +Q+GR+G +TPVA +E V I GA 
Sbjct: 289 DFRLRDVLGYTSHHPKWSIAYKFESLRAVSKVIDIVVQVGRSGKITPVANIEKVLIAGAF 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           IT+A+LHN+DYI   D+ G        + V D V + R G+VIP  V+++V +       
Sbjct: 349 ITSASLHNQDYI---DSIG--------LNVKDVVAISRRGDVIP-AVELVVEKL--SVGN 394

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P++CP C+  ++++          AH     + C  + +  +K+F S+   NI GL 
Sbjct: 395 FKIPNYCPSCKKSLIKE---------GAHLFCVNIHCPLKIMGHIKYFCSKKCMNIVGLS 445

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++F F        I    D++T          ++  + GF    V  L  SI + +N
Sbjct: 446 EKTIEFLFNMN----FISSEIDLYTFD------FDRLIGLKGFNFKRVNKLKRSIEESKN 495

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              ++ + ++GI+ +G      L     +  +F   I+ +   N +  + L+ +  +G+ 
Sbjct: 496 RPFKKLLLAMGIKDLGINTILLLIN--NNLNSF-DAISLLCQDNKNALVKLLDIKGIGER 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRH 664
           IA  I+  + N + I       K++   +     N    SS +  KK   TG+  +  RH
Sbjct: 553 IAFNIIRAF-NDKIILDKFNFFKKLGFKMQEDSMNCVIDSSFLFGKKFCITGSFDEYSRH 611

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
              + +T+ GA+  + +SR  D ++VG +PG KL+KA  LG+KI++
Sbjct: 612 VLIDKITKKGAIFHSAVSRYLDFLLVGKSPGLKLKKANNLGIKILS 657


>gi|116329958|ref|YP_799676.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|122282269|sp|Q04W02|DNLJ_LEPBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116123647|gb|ABJ74918.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 681

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 219/743 (29%), Positives = 356/743 (47%), Gaps = 82/743 (11%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++      LS ++A+K ++ L  EI +H   YY  ++P I D ++D L +R   +  
Sbjct: 1   MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP     +D N P   +G +++    K  H +P LSL   +N ++L          W  
Sbjct: 61  EFPQF---KDLNSPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDDELLD--------WVN 109

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K D    +++E KIDG  I + YE G       RG G  G+DV+  IR +  IP    L 
Sbjct: 110 KTDPDGLYSVEWKIDGASIVLYYENGMLKNGVTRGSGGIGDDVTDNIRTVRNIP----LR 165

Query: 181 IPEIIEV--RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237
           +PE I V  RGEV+++  DF   N+  ++ G+  YANPRN ++G +++ N  D   R L 
Sbjct: 166 LPEPITVYLRGEVFMTFKDFEEFNE--LSSGK--YANPRNLSAGSIKQKNSADTAKRPLR 221

Query: 238 FFVHGL---GKTSEIFAKGQYEMLQKMRCLGFPVN------NGVRQANTFHGIVSYYNEM 288
            F +     G T +   K   ++L K+  L FPV       NG + A T         + 
Sbjct: 222 IFTYDATFPGFTKKF--KTHQQILSKLEKLTFPVPPDTVFVNGSKIAETI-------KDF 272

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
           K  + TL +  DGLV K+++ S +   G  + SPRW  ++KF      +R++DI   +GR
Sbjct: 273 KKKKDTLGFPTDGLVIKLNDISKRDAQGYTSHSPRWARAYKFDAIMKESRIVDITYAVGR 332

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TP   +EPVN+ G  +T ATLHN+DYI  L            + +G  V V + GE
Sbjct: 333 TGKITPRVEIEPVNLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGE 381

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           +IP V ++I     P    F  P +CP C+++ ++  N      +    C     C  + 
Sbjct: 382 IIPAVEEVIT----PGKDVFKIPDYCPSCKTKTIKKEN------LVDLFCPNP-DCPDRV 430

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
              +  +  R   +IEGLG +Q++F +   D  + IR  AD++ L+ +++    K+    
Sbjct: 431 KNGIIFYCQRKQMDIEGLGDKQIEFLY---DHGY-IRSIADLYDLKDQKE----KLMEEE 482

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI- 587
           GFG+ S+  +++ I   +       + S+G+  +G ++   L ++ +        I+ I 
Sbjct: 483 GFGEKSLAIIFNGIEHSKQKDFRFLLPSIGLPELGHKVTELLIEHGID------SIDEIL 536

Query: 588 -IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
            IA +     SL+ +P +G    +A  E + + R I  + A LK     +      VS +
Sbjct: 537 SIAKDKKRISSLLEIPGIGPSTIKAFEENFSDKR-ILKLIARLKNAGLKLKADPIKVSDQ 595

Query: 647 --IENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
                +    TG+ +  Q R KA + V   G    + +S KT  ++ G   GSKLEKA +
Sbjct: 596 QPFAGQSWCVTGSFENFQPRDKAMDLVVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANE 655

Query: 704 LGVKIMNEEQFLFLLQQYNTTLR 726
           LG+ + NE+QFL LL+      +
Sbjct: 656 LGIVVYNEKQFLDLLKSLKINFK 678


>gi|126347877|emb|CAJ89597.1| putative DNA ligase [Streptomyces ambofaciens ATCC 23877]
          Length = 702

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 203/702 (28%), Positives = 334/702 (47%), Gaps = 73/702 (10%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+ YD L R   A     PD      P+ P  K+ G    +   V H++P LSL+ +++ 
Sbjct: 41  DATYDRLARGIAAWEAEHPDEVL---PDSPTGKVAG--GAAEGDVPHTVPMLSLDNVFSP 95

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164
           E+   +   + R   ++ D    F + PK+DG  +  RY  G+      RGDG +GEDVS
Sbjct: 96  EEFLAWTVSLARRTGREVDR---FVVGPKLDGLAVAARYRAGRLTRLITRGDGTAGEDVS 152

Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224
             I  +  +P  L+   P  +E+RGE+ ++   F   N+     G +P+ANPRNAA+G L
Sbjct: 153 HAIGTVEGLPETLAE--PVTVEIRGEILMTTAQFEHANEVRTGHGGQPFANPRNAAAGTL 210

Query: 225 RRLNPTDITRYLNFFVHG---LGKTSEIFAK-----GQYEMLQKMRCLGFPVNNGVRQAN 276
           R       T  + FF +G   L +T  + A       Q +++     LG   + G    +
Sbjct: 211 R-ARERAYTVPMTFFGYGMLPLPETDAVLAGRLDDLAQSDLMSMAAGLGVHTSAGTAVPD 269

Query: 277 ----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
               T   +V+   E  ++R+ LP+ IDG+V K D  + ++  G  +R+PRW +++K   
Sbjct: 270 VVVTTPEQVVARVRETAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAVAYKLPA 329

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            +  TRLL+++  +GRTG++ P   LEPV I G+ IT ATLHN   I             
Sbjct: 330 VERITRLLEVEWNVGRTGVIAPRGVLEPVVIDGSTITYATLHNPADIT-----------R 378

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           R +R+GD V+V RAG+VIP++   + + R  D +P +FPS CP C S    D++    + 
Sbjct: 379 RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGDERPIAFPSVCPRCGS----DIDTSQERW 434

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
               RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +   AD+FT
Sbjct: 435 ----RCAQGRNC--HLVASLAYAAGRDQLDIEGLGATRVVQLVE----AGLVADLADLFT 484

Query: 513 LQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
           L R         E +LG    G  S  NL  ++   +   L R + +LG+R  G  ++R 
Sbjct: 485 LGR---------EQLLGLDRMGQTSTDNLLAALAAAKEQPLSRVLCALGVRGTGRSMSRR 535

Query: 570 LAKYYLSYQNF-------AQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAI--VEFYQN 618
           +A+++ +  +         Q++  I        ++ I    PL+  + A  +   E    
Sbjct: 536 IARHFATMDHIRAADADAMQQVEGIGPEKAPSIVAEIAELAPLIDKLAAAGVGMTEPGAT 595

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL--VFTGTLQKIQRHKAQEYVTQLGAV 676
           P  +   +A  ++    +               +    TG+L+K+ R++  E V + G  
Sbjct: 596 PPPVTGADAEEEDGGSPVAAPGAAGPLAGMRVVVTGAMTGSLEKLSRNEMNELVERAGGH 655

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            S+ +SRKT +++ G+  GSK  KA+QLG+++   E+F  L+
Sbjct: 656 SSSSVSRKTTLVVAGEGAGSKRAKAEQLGIRLATPEEFAALV 697


>gi|294786747|ref|ZP_06752001.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305]
 gi|315226368|ref|ZP_07868156.1| DNA ligase [Parascardovia denticolens DSM 10105]
 gi|294485580|gb|EFG33214.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305]
 gi|315120500|gb|EFT83632.1| DNA ligase [Parascardovia denticolens DSM 10105]
          Length = 868

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 228/812 (28%), Positives = 372/812 (45%), Gaps = 123/812 (15%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I + AL ++ A +  + +   +      YY    P+  DS YD        +   FP L 
Sbjct: 49  IDLVALPVDLAARLWAKVASWVEDDQIAYYVNDSPVSSDSAYDQRMLTLQRLEAQFPAL- 107

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             ++P  P +++GG  +    +V H    LSL+ ++++E+L+ +   + R    K  + +
Sbjct: 108 --DNPQSPTHRVGGTFSNDFTEVRHPSRMLSLDDVFSLEELKDWYQSLVRDLDWKAGDPL 165

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I  IP  L+    +IP+
Sbjct: 166 PMTSEVKIDGLALNLVYRHGVLEQGLTRGDGVTGEDITMNVRTIAGIPSQLAGDPADIPD 225

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242
           ++E+RGEV++  +DF  LND+  A G+  +ANPRNAA+G LR+ +P     R L+F+ HG
Sbjct: 226 LVEIRGEVFMRFDDFRKLNDQAQAEGKPTFANPRNAAAGSLRQKDPRITARRRLSFYAHG 285

Query: 243 LG----------KTSEIFAKGQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           LG          +  +I  + Q Y++ +  R    P N  V        ++SYY +    
Sbjct: 286 LGILEWGPQAAVRHPDIERQSQAYDLYRTWRIPTSPHNRLVNSYVEILDMISYYGDH--- 342

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R  + + +DG+V KVD+ +LQ++LG  AR+PRW I++K+  ++ +T LLDI +Q+GRTG 
Sbjct: 343 RYDIEHPLDGIVVKVDQLALQRRLGATARAPRWAIAYKYPPEEVNTDLLDIRVQVGRTGR 402

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVA L PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP
Sbjct: 403 VTPVAHLRPVQVAGSTVARTTLHNPSEVK-----------HKGILIGDLVVVRKAGDVIP 451

Query: 412 KVVDIIVN---ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           ++V  ++    ER    + F  P  CP C + +  +   K G      RC    +C AQ 
Sbjct: 452 ELVGPVLAARPEREGRLREFVMPDRCPSCGTELAPE---KEGD--KDWRCPNVESCPAQL 506

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSED----------------------------P 500
             R+ H  SR AF+IE LG+Q        E+                            P
Sbjct: 507 ANRVLHLASRQAFDIEHLGEQSALALTNPENNRPDSVDEYLPDIKEILIEEGEEPPVYLP 566

Query: 501 AFSIRIP----------ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           A  +R+P          AD+F L R +   + +    +   ++S     D+  K+R I  
Sbjct: 567 AEGLRLPPEQKPVVQSEADLFAL-RPEDLRSVRTWREIPLVEISERTDPDTGKKKR-IRK 624

Query: 551 ERFIFSLGIRHVG----AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL--V 604
            R    L  +        +  +SLA+   S    A       A   D W  L+ + +  V
Sbjct: 625 NRGGSGLWTQVPAFFNLPKKGQSLAETQPSKTTLAMFEEFDKARQADLWRVLVALSIRHV 684

Query: 605 GDIIAQAIVEFYQ--------NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
           G   A+ I + ++        +   + +++A+  E++ S+ +  +        +  +   
Sbjct: 685 GAPTARLIAKHFKTLTAISQASEEELTSIDAIGDEIAKSVYQWFREAQDPSSWRGQILAA 744

Query: 657 TLQKIQRHKAQEYVTQ----LGAVV---------------SAILSR----------KTDI 687
             Q     KA E VT      G  V                AI SR          KT  
Sbjct: 745 WAQAGIGRKAAETVTDEQTLAGKTVVVTGTLEDFSRESAKEAIESRGGKAAGSVSKKTSY 804

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++VG N GSK  KA+ LG+ +++E+QF  LL+
Sbjct: 805 VVVGANAGSKASKAEALGIPMLDEDQFKTLLE 836


>gi|227499502|ref|ZP_03929609.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098]
 gi|227218381|gb|EEI83632.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098]
          Length = 666

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 203/716 (28%), Positives = 355/716 (49%), Gaps = 70/716 (9%)

Query: 18  RKELSSLEQ---EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           R+E+S L +   E++YH   YY   +P++ D EYD L  +   + +    +      N P
Sbjct: 4   REEISQLIEKINELNYH---YYTLDEPLVSDGEYDKLYDKLKKLENESGIVL----DNSP 56

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFF 128
              +GG++     K  H    LS  K  +  +L  +I R  R  ++ +DN       I F
Sbjct: 57  TQIVGGQILDKFEKHYHLTKLLSQNKAQSYAELEDWIDRCQRLRKEYNDNHEDKLDEIEF 116

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E K DG  + + YE GK   AA RG+G  GE++ A ++ I +IP  L++    ++E++
Sbjct: 117 IMEYKFDGLTVNLTYENGKLTSAASRGNGVVGEEILAQVKTIKSIP--LTIKEESLLEIQ 174

Query: 189 GEVYISKNDFLALN-DEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKT 246
           GE  +  ++    N D  I +      N RNAA+G LR L+  +  R  L  + + +  T
Sbjct: 175 GEALMPLSELAKYNKDNEIQL-----KNARNAAAGALRNLDTRETARRNLTAYFYAV-PT 228

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           + +  K + +ML  ++  GF ++   ++ +    I+     ++  R  +    DG+V K+
Sbjct: 229 NNLDFKTEEDMLDFLKNQGFNIHPYHKKVHNLDEIIRELKFIEEERKKIDILTDGVVIKI 288

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++   Q+ L    + PRW I+ KF  ++ +T L  +   +GRTG +TP A L+PV   GA
Sbjct: 289 NDKKTQEVLSNTNKFPRWSIAFKFEAEEYTTTLRKVVWNVGRTGKVTPSAILDPVEFSGA 348

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATL+N D          ++R  + I++G RV ++R+ +VIP+++  +V+E      
Sbjct: 349 TVSRATLNNYD---------DILR--KKIKIGSRVFIRRSNDVIPEILG-VVDENQEGTS 396

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               P FCP C S ++++           H  C   ++C  Q L R++HF SR+A +IEG
Sbjct: 397 EIEKPKFCPYCSSELIQE---------NVHIVCPNSISCKPQLLARIEHFASRNAMDIEG 447

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           L ++ +       D    I    DI+ L   Q     K+E    FGD    NL ++I   
Sbjct: 448 LSEKTIAQLMDELD----INEVDDIYDLTYEQ---LIKLER---FGDKKTKNLLEAIENS 497

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLV 604
           + + L+ FI+++GI +VG   +R LA  + S+    A +++            L  +  +
Sbjct: 498 KKVDLQHFIYAIGIPNVGERTSRDLANKFKSFDKLRASKVD-----------ELTDIDDI 546

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+I A+ IVEF+ +P    ++E LL +        E N S  + N   V TGT++  +R 
Sbjct: 547 GEITAENIVEFFSDPNISKSIENLLAKGIEISKPKEDNNSDGLNNLTFVITGTIENYKRD 606

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  + + G  V+  +S+ TDI++ G+  GSK  KA++L V+I  +++    L++
Sbjct: 607 DIKNLIEKNGGKVTGSVSKNTDILLAGEKAGSKKTKAEELNVEIYEDQKLYDFLKE 662


>gi|171742735|ref|ZP_02918542.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC
           27678]
 gi|283456203|ref|YP_003360767.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1]
 gi|171278349|gb|EDT46010.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC
           27678]
 gi|283102837|gb|ADB09943.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1]
          Length = 897

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 175/502 (34%), Positives = 265/502 (52%), Gaps = 44/502 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +LS E A +  + +   +      YY    PI  D+ YDA  R   A+   FP L   
Sbjct: 63  VSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPSL--- 119

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +  
Sbjct: 120 DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPLPM 179

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEII 185
           T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+ L+    +IPE +
Sbjct: 180 TCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEGDIPEFV 239

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG+G
Sbjct: 240 EIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 299

Query: 245 KTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRS 293
                  +         Q E        G PV+   R+  +F  I   + YY E    R 
Sbjct: 300 SLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREITSFTDILDMIDYYGEH---RG 356

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +T
Sbjct: 357 DIEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVT 416

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN           +V R G  + +GD V+V++AG+VIP++
Sbjct: 417 PVAILKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVIPEL 465

Query: 414 VDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP--KTGKLVAAHRCTGGLACSAQQ 468
           V  ++     R      F  P+ CP C +    +L P  K  K +   RC    +C AQ 
Sbjct: 466 VGPVLERRKGREESLHAFVMPTHCPSCGA----ELAPAKKGDKDI---RCPNVESCPAQL 518

Query: 469 LERLKHFVSRDAFNIEGLGKQQ 490
            ER+ +  SR AF+IE LG Q 
Sbjct: 519 TERIINLASRKAFDIEHLGDQS 540



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 133/294 (45%), Gaps = 21/294 (7%)

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
            PI +     D+N  TGK     +  GG     Q         S    + + L + +++ 
Sbjct: 615 APIIEIHETVDVN--TGKTKKTRKRVGGSGLWHQVPAFWTAPTSARKLSAKKLAELEVNG 672

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN---LYDSINKRRNISL 550
              SE P +++  PAD   ++   + S T + ++         N   + D + K R++ L
Sbjct: 673 AAVSEYPEYNV--PADAVVIREDTKVSRTGVTSVQPVYVRPAENTRKMLDEMEKARHVDL 730

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IR +G   AR++A  + S         + I H + + LS I    +G  IA+
Sbjct: 731 WRVLVALSIRRLGPPTARTIATAFGSL--------DAIEHASVEELSAIDG--IGPEIAE 780

Query: 611 AIVEFY---QNPRNI-CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++V ++     P N    V    K     +     ++   +  K +V TG+L    R  A
Sbjct: 781 SVVTWFTAAHEPGNWRGTVLDAWKTAGVGVVAETNDLPQTLAGKTVVVTGSLVDFSRDSA 840

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +E +   G   +  +SRKTD ++VG+N GSK  KA++LG+ ++NE+QF  LL  
Sbjct: 841 KEAIISHGGKAAGSVSRKTDWVVVGENAGSKAAKAEELGIPMLNEDQFKQLLSS 894


>gi|306822599|ref|ZP_07455977.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679]
 gi|304554144|gb|EFM42053.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679]
          Length = 897

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 175/502 (34%), Positives = 265/502 (52%), Gaps = 44/502 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +LS E A +  + +   +      YY    PI  D+ YDA  R   A+   FP L   
Sbjct: 63  VSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPPL--- 119

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +  
Sbjct: 120 DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPLPM 179

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEII 185
           T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+ L+    +IPE +
Sbjct: 180 TCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEDDIPEFV 239

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG+G
Sbjct: 240 EIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 299

Query: 245 KTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRS 293
                  +         Q E        G PV+   R+  +F  I   + YY E    R 
Sbjct: 300 SLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREVTSFTDILDMIDYYGEH---RG 356

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +T
Sbjct: 357 DIEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVT 416

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN           +V R G  + +GD V+V++AG+VIP++
Sbjct: 417 PVAILKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVIPEL 465

Query: 414 VDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP--KTGKLVAAHRCTGGLACSAQQ 468
           V  ++     R      F  P+ CP C +    +L P  K  K +   RC    +C AQ 
Sbjct: 466 VGPVLERRKGREESLHAFVMPTHCPSCGA----ELAPAKKGDKDI---RCPNVESCPAQL 518

Query: 469 LERLKHFVSRDAFNIEGLGKQQ 490
            ER+ +  SR AF+IE LG Q 
Sbjct: 519 TERIINLASRKAFDIEHLGDQS 540



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 134/294 (45%), Gaps = 21/294 (7%)

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
            PI +     D+N  TGK+    +  GG     Q         S    + + L + +++ 
Sbjct: 615 APIIEIHETVDVN--TGKIKKTRKRVGGSGLWHQVPAFWTAPTSARKLSAKKLAELEVNG 672

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN---LYDSINKRRNISL 550
              SE P +++  PAD   ++   + S T + ++         N   + D + K R++ L
Sbjct: 673 AAVSEYPEYNV--PADAVVIREDTKVSRTGVTSVQPVYVRPAENTRKMLDEMEKARHVDL 730

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IR +G   AR++A  + S         + I H + + LS I    +G  IA+
Sbjct: 731 WRVLVALSIRRLGPPTARTIATAFGSL--------DAIEHASVEELSAIDG--IGPEIAE 780

Query: 611 AIVEFY---QNPRNI-CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++V ++     P N    V    K     +     ++   +  K +V TG+L    R  A
Sbjct: 781 SVVTWFTAAHEPGNWRGTVLDAWKTAGVGVVAETNDLPQTLAGKTVVVTGSLVDFSRDSA 840

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +E +   G   +  +SRKTD ++VG+N GSK  KA++LG+ ++NE+QF  LL  
Sbjct: 841 KEAIISHGGKAAGSVSRKTDWVVVGENAGSKAAKAEELGIPMLNEDQFKQLLSS 894


>gi|228982993|ref|ZP_04143252.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407]
 gi|228777176|gb|EEM25484.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407]
          Length = 669

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 227/731 (31%), Positives = 359/731 (49%), Gaps = 88/731 (12%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQ  K+L    +E+  HD   Y    PII DSEYD +     ++    P+ A   D N 
Sbjct: 2   IEQKIKQL---REEVMKHD-LLYDEGTPIITDSEYDQMYYELVSLEEKHPEFA---DENS 54

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  +I   +  SL K+ HS P LS +K    ED       I +F  K DD  I    E  
Sbjct: 55  PTKRIYSVVVDSLKKIKHSTPMLSQDKGHTEED-------IVKFANKSDDEIIAGDKE-- 105

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I ++Y  G +  A+ RGDG+ GEDV+  +R I  +P+ +S      +EVR E  I
Sbjct: 106 -DGLTIVLKYNNGIYYEASTRGDGYIGEDVTHTVRTITNLPKKISFK--GYLEVRAESVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
             ++F     E I V  K Y +PRN  SG +R LN      R L+     L K   I  +
Sbjct: 163 PFSEF-----ERINVDGK-YKSPRNLVSGSVRTLNANIAKERGLSIIAFDLVKAEGITFE 216

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSY---YNEMKSIRSTLPYDIDGLVYKV 306
              E L+ ++  GF V       NT  GI   + Y   YN  K +R T+P+ IDGLV K 
Sbjct: 217 KDTEQLEFLKEQGFNVVPYKVFKNTPEGIKELIQYCLTYN--KEVRPTIPHMIDGLVLKF 274

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  ++++ LG  ++ PRW  + KF    A+T+LL+I   +G++G +TP    EPV I G 
Sbjct: 275 NNLAVRESLGYTSKFPRWGFAFKFDSLDATTKLLNIVETVGKSGQITPNGIFEPVEIDGV 334

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I  A+L N D IK            RDIR+GD ++V RA +VIP++V  +   R    +
Sbjct: 335 TIQKASLANYDNIK-----------ERDIRIGDTIVVARANDVIPQIVSAVTELRDGTEK 383

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP+C+  VV++ +         H       CSAQQ   LKHFVSR+A NI+GL
Sbjct: 384 EILPPTCCPVCKGEVVKEED-------NVHYFCINSTCSAQQERILKHFVSRNAMNIDGL 436

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++ F++       +   +DI+TL    + +  K+  + GFG+  +  +   I + +
Sbjct: 437 GAKTVETFYEKG----ILSSISDIYTL----KDNLDKLSVLRGFGEKKIQKMLSGIEESK 488

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           ++ L +F+++L I +VG+   + +AK + + ++  +   + +    +    L+++  +G+
Sbjct: 489 HVPLSKFLYALAIPNVGSSTGKDIAKKFKTMRHLIELSKDPVVLKTE----LMKIDGIGE 544

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIG------RHEKNVSSEIENKKLVFTGTLQK 660
            +A ++V +++   NI  +E L      SIG        E   S EIE K  V TG+L K
Sbjct: 545 TVASSMVSYFEESHNIELIEFLY-----SIGFTMMEEVEEIIASEEIEGKIFVITGSLSK 599

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVG------------DNPGSKLEKAQQLGVKI 708
             R+  ++ +   G  VS  +S KT+ +++G            +   SK + A +    I
Sbjct: 600 -PRNDIKKEIEARGGKVSGSVSAKTNFLVLGGYNHVTGELPEKETNSSKYKNAVKFECPI 658

Query: 709 MNEEQFLFLLQ 719
           ++EE+    +Q
Sbjct: 659 ISEEELFAKMQ 669


>gi|309800924|ref|ZP_07695056.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022]
 gi|308222460|gb|EFO78740.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022]
          Length = 885

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 175/502 (34%), Positives = 265/502 (52%), Gaps = 44/502 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +LS E A +  + +   +      YY    PI  D+ YDA  R   A+   FP L   
Sbjct: 63  VSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPPL--- 119

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +  
Sbjct: 120 DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPLPM 179

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEII 185
           T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+ L+    +IPE +
Sbjct: 180 TCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEDDIPEFV 239

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG+G
Sbjct: 240 EIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 299

Query: 245 KTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRS 293
                  +         Q E        G PV+   R+  +F  I   + YY E    R 
Sbjct: 300 SLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREVTSFTDILDMIDYYGEH---RG 356

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +T
Sbjct: 357 DIEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVT 416

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN           +V R G  + +GD V+V++AG+VIP++
Sbjct: 417 PVAILKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVIPEL 465

Query: 414 VDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP--KTGKLVAAHRCTGGLACSAQQ 468
           V  ++     R      F  P+ CP C +    +L P  K  K +   RC    +C AQ 
Sbjct: 466 VGPVLERRKGREESLHAFVMPTHCPSCGA----ELAPAKKGDKDI---RCPNVESCPAQL 518

Query: 469 LERLKHFVSRDAFNIEGLGKQQ 490
            ER+ +  SR AF+IE LG Q 
Sbjct: 519 TERIINLASRKAFDIEHLGDQS 540



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 129/294 (43%), Gaps = 33/294 (11%)

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
            PI +     D+N  TGK+    +  GG     Q         S    + + L + +++ 
Sbjct: 615 APIIEIHETVDVN--TGKIKKTRKRVGGSGLWHQVPAFWTAPTSARKLSAKKLAELEVNG 672

Query: 494 FFKSEDPAFSIRIPADIFTLQ---RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
              SE P +++  PAD   ++   +  +T  T ++ +      +   + D + K R++ L
Sbjct: 673 AAVSEYPEYNV--PADAVVIREDTKVSRTGVTSVQPVYVRPAENTRKMLDEMEKARHVDL 730

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IR +G   AR++A  + S         + I H + + LS I    +G  IA+
Sbjct: 731 WRVLVALSIRRLGPPTARTIATAFGSL--------DAIEHASVEELSAIDG--IGPEIAE 780

Query: 611 AIVEFY---QNPRNI-CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++V ++     P N    V    K     +     ++   +  K +V TG+L        
Sbjct: 781 SVVTWFTAAHEPGNWRGTVLDAWKTAGVGVVAETNDLPQTLAGKTVVVTGSL-------- 832

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
                   A     LSRKTD ++VG+N GSK  KA++LG+ ++NE+QF  LL  
Sbjct: 833 ----VDFSATPPRSLSRKTDWVVVGENAGSKAAKAEELGIPMLNEDQFKQLLSS 882


>gi|116329438|ref|YP_799158.1| DNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|122282782|sp|Q04XH0|DNLJ_LEPBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116122182|gb|ABJ80225.1| DNA ligase (NAD+) (contains BRCT domain type II) [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 681

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 219/743 (29%), Positives = 356/743 (47%), Gaps = 82/743 (11%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++      LS ++A+K ++ L  EI +H   YY  ++P I D ++D L +R   +  
Sbjct: 1   MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP     +D N P   +G +++    K  H +P LSL   +N ++L          W  
Sbjct: 61  EFPQF---KDLNSPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDDELLD--------WVN 109

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K D    +++E KIDG  I + YE G       RG G  G+DV+  IR +  IP    L 
Sbjct: 110 KTDPDGLYSVEWKIDGASIVLYYENGMLKNGVTRGSGGIGDDVTDNIRTVRNIP----LR 165

Query: 181 IPEIIEV--RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237
           +PE I V  RGEV+++  DF   N+  ++ G+  YANPRN ++G +++ N  D   R L 
Sbjct: 166 LPEPITVYLRGEVFMTFKDFEEFNE--LSSGK--YANPRNLSAGSIKQKNSADTAKRPLR 221

Query: 238 FFVHGL---GKTSEIFAKGQYEMLQKMRCLGFPVN------NGVRQANTFHGIVSYYNEM 288
            F +     G T +   K   ++L K+  L FPV       NG + A T         + 
Sbjct: 222 IFTYDATFPGFTKKF--KTHQQILSKLEKLTFPVPPDTVFVNGSKIAETI-------KDF 272

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
           K  + TL +  DGLV K+++ S +   G  + SPRW  ++KF      +R++DI   +GR
Sbjct: 273 KKKKDTLGFPTDGLVIKLNDISKRDAQGYTSHSPRWARAYKFDAIMKESRIVDITYAVGR 332

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TP   +EPVN+ G  +T ATLHN+DYI  L            + +G  V V + GE
Sbjct: 333 TGKITPRVEIEPVNLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGE 381

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           +IP V ++I     P    F  P +CP C+++ ++  N      +    C     C  + 
Sbjct: 382 IIPAVEEVIT----PGKDVFKIPDYCPSCKTKTIKKEN------LVDLFCPNP-DCPDRV 430

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
              +  +  R   +IEGLG +Q++F +   D  + IR  AD++ L+ +++    K+    
Sbjct: 431 KNGIIFYCQRKQMDIEGLGDKQIEFLY---DHGY-IRSIADLYDLKDQKE----KLIEEE 482

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI- 587
           GFG+ S+  +++ I   +       + S+G+  +G ++   L ++ +        I+ I 
Sbjct: 483 GFGEKSLAIIFNGIEHSKQKDFRFLLPSIGLPELGHKVTELLIEHGID------SIDEIL 536

Query: 588 -IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
            IA +     SL+ +P +G    +A  E + + R I  + A LK     +      VS +
Sbjct: 537 SIAKDKKRISSLLEIPGIGPSTIKAFEENFSDKR-ILKLIARLKNAGLKLKADPIKVSDQ 595

Query: 647 --IENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
                +    TG+ +  Q R KA + V   G    + +S KT  ++ G   GSKLEKA +
Sbjct: 596 QPFAGQSWCVTGSFENFQPRDKAMDLVVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANE 655

Query: 704 LGVKIMNEEQFLFLLQQYNTTLR 726
           LG+ + NE+QFL LL+      +
Sbjct: 656 LGIVVYNEKQFLDLLKSLKINFK 678


>gi|294790698|ref|ZP_06755856.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304]
 gi|294458595|gb|EFG26948.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304]
          Length = 815

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 166/482 (34%), Positives = 263/482 (54%), Gaps = 58/482 (12%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    PI  D+ YD   +    +   FP L   ++P    +++GG  +     V H  
Sbjct: 50  AYYVNDSPISSDAAYDERMKTLQRLEAHFPQL---DNPQSLTHRVGGTFSNDFASVRHPS 106

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P +SL+ ++++++L+ +   +    +      +  T E KIDG  + + Y KG       
Sbjct: 107 PMMSLDDVFSLQELKSWYQGVRDDLEWPSSQPLPMTCEVKIDGLALNLIYRKGILEQGLT 166

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
           RGDG  GED++  +R I +IP  L+    +IP+++E+RGEV++  +DF  LND+    G+
Sbjct: 167 RGDGIVGEDITMNVRTISSIPTQLTGKAEDIPDLVEIRGEVFMRFDDFTRLNDQAEREGK 226

Query: 211 KPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG--------QYEMLQKM 261
            P+ANPRNAA+G LR+ +P    +R+L+F+ HG+G  S ++ +G        Q +     
Sbjct: 227 APFANPRNAAAGSLRQKDPRITASRHLSFYAHGIG--SLVWPQGSNHPSIERQSQAYDLY 284

Query: 262 RCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
              G PV+   RQA +F  I   +SYY E    R ++ + +DG+V K+D+ +LQ++LG  
Sbjct: 285 AAWGIPVSTHTRQARSFTDITDMISYYGEH---RYSIEHALDGIVVKIDDLALQRRLGST 341

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           AR+PRW  ++K+  ++ +T L+DI +Q+GRTG +TPVA L+PV + G+ ++  TLHN   
Sbjct: 342 ARAPRWATAYKYPPEEVNTDLIDITVQVGRTGRVTPVAHLKPVKVAGSTVSRTTLHN--- 398

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ----PFSFPSFC 434
                 + +V R G  I +GD V+V++AG+VIP++V  +V  R PD +    PF  P  C
Sbjct: 399 ------AYEVERKG--ILIGDLVVVRKAGDVIPELVGPVVAAR-PDRKSQLRPFLMPKTC 449

Query: 435 PICQSRVVRDLNPKTGKLVAAH-------RCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           P C            G L+A         RC    +C AQ   R+ H  SR AF+IE LG
Sbjct: 450 PSC------------GALLAPEKEGDKDIRCPNVESCPAQLANRVLHLASRQAFDIEHLG 497

Query: 488 KQ 489
           +Q
Sbjct: 498 EQ 499



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 15/187 (8%)

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           +++  +K +   L R + +L IRHVGA  AR L++ + + Q  +Q      A   D    
Sbjct: 632 MFEEFDKAKRADLWRVLVALSIRHVGAPTARLLSRKFKTLQALSQ------ASVED---- 681

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEA--LLKEVSPSIGRH--EKNVSSE-IENKKL 652
           L++V  VG+ IAQ+I  ++ + R+        L    +  IG+   E+N + + +  K +
Sbjct: 682 LLQVDGVGEEIAQSIERWFSHARDPQDWRGKILRSWTAAGIGQQAAEENTAEQTLTGKTV 741

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL+   R  A+E + + G   S  +S+KT  ++VG + GSK  KAQ+LG+ +++E+
Sbjct: 742 VVTGTLEDFSRESAKEAIEERGGKASGSVSKKTSYVVVGASAGSKAVKAQELGIPMLDED 801

Query: 713 QFLFLLQ 719
           QF  LL+
Sbjct: 802 QFKALLE 808


>gi|153831457|ref|ZP_01984124.1| DNA ligase [Vibrio cholerae 623-39]
 gi|148873061|gb|EDL71196.1| DNA ligase [Vibrio cholerae 623-39]
          Length = 373

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/401 (38%), Positives = 242/401 (60%), Gaps = 33/401 (8%)

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233
           R+   + P  +EVRGEV++ K  F ALN   +  G K + NPRNAA+G LR+L+ + IT 
Sbjct: 2   RLQGADFPTRLEVRGEVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITA 60

Query: 234 -RYLNFFVHGLG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
            R L F+ + +G  +  E+ A   Y+   +++  G P+    +   +   + ++Y ++  
Sbjct: 61  QRPLAFYAYSVGVIEGGEL-ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQ 119

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R +L Y+IDG+V KVD+  LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG
Sbjct: 120 RRQSLAYEIDGVVIKVDDIQLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTG 179

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVA+LEPV +GG  ++NATLHN D I+ L            + VGD V+++RAG+VI
Sbjct: 180 AITPVAKLEPVFVGGVTVSNATLHNADEIERL-----------GVMVGDTVVIRRAGDVI 228

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P++V +++  R  +A+   FP+ CP+CQS    D+    G+ VA  RC+GGL C AQ+ E
Sbjct: 229 PQIVSVVLERRPENAKSIVFPTRCPVCQS----DVERVEGEAVA--RCSGGLICQAQRKE 282

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            LKHFVSR A ++EGLG + ++     E     +  PAD+F L+  + T   ++      
Sbjct: 283 ALKHFVSRKAMDVEGLGDKVIEQLVDRE----MVSTPADLFRLRAGELTILERM------ 332

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           G  S  N+ D++NK +  +L +F+++LGIR VG   A +LA
Sbjct: 333 GPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLA 373


>gi|260202156|ref|ZP_05769647.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T46]
 gi|289444580|ref|ZP_06434324.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46]
 gi|289417499|gb|EFD14739.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46]
          Length = 517

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 177/542 (32%), Positives = 280/542 (51%), Gaps = 37/542 (6%)

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +PE++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L   
Sbjct: 1   MPEVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMI 60

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLP 296
            HGLG          ++    +R  G PV+     A    G+   + Y+ E    R  + 
Sbjct: 61  CHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVD 117

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           ++IDG+V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A
Sbjct: 118 HEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFA 177

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            + PV + G+ +  ATLHN   IK         R G  + +GD V++++AG+VIP+V+  
Sbjct: 178 FMTPVKVAGSTVGQATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGP 226

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +V  R    + F  P+ CP C S +  +   K G   A  RC     C  Q  ER+ H  
Sbjct: 227 VVELRDGSEREFIMPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVA 281

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR+  +IE LG +      +++     I    ++F L  R    T       G    +  
Sbjct: 282 SRNGLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGK 337

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            L  +++K +   L R + +L IRHVG   AR+LA  + S       ++ I A + D   
Sbjct: 338 RLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAASTD--- 387

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            L  V  VG  IA A+ E++    +   V+         +   +++V   +    +V TG
Sbjct: 388 QLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTG 447

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L    R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  
Sbjct: 448 SLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRR 507

Query: 717 LL 718
           LL
Sbjct: 508 LL 509


>gi|212715716|ref|ZP_03323844.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661083|gb|EEB21658.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM
           16992]
          Length = 891

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 172/499 (34%), Positives = 267/499 (53%), Gaps = 40/499 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + ++S E A +  + +   +      YY    P+  D+ YDA  R   A+   FP L  +
Sbjct: 65  VSSMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARMRCLQALEAQFPSLDST 124

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P    +++GG  +     V H    +SL+ ++++E+LR++   + R     D   +  
Sbjct: 125 QSPT---HRVGGTFSNDFASVRHPSRMMSLDDVFSLEELREWYDSVIRGLDWSDTKPLPM 181

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185
           T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+ L+    +IPE +
Sbjct: 182 TCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPEFV 241

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG+G
Sbjct: 242 EIRGEVFMRWDDFNTLNRESEDAGRAPFANPRNAAAGSLRQKDPRITSTRRLSFYAHGIG 301

Query: 245 KTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRS 293
                  +G        Q E  +  +  G PV+   R+  TF  I   + YY E    R 
Sbjct: 302 TLQWGAKRGDGHDIVNNQSEAYELYKKWGIPVSPHNREVTTFSQILDMIDYYGEH---RG 358

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +T
Sbjct: 359 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 418

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN           +V R G  + +GD V+V++AG+VIP++
Sbjct: 419 PVAILKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVIPEL 467

Query: 414 VDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  ++     R    + F  PS CP C +++      K G      RC    +C AQ  E
Sbjct: 468 VGPVLERREGREDQLRRFVMPSQCPSCGAQLA---PAKEGD--KDIRCPNVESCPAQLTE 522

Query: 471 RLKHFVSRDAFNIEGLGKQ 489
           R+ +  SR AF+IE LG Q
Sbjct: 523 RIINLASRKAFDIEHLGDQ 541



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 15/187 (8%)

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           + D I+K R+  L R + +L IR +G   AR +A       N    ++ I   + D+   
Sbjct: 711 MLDEIDKARHADLWRVLVALSIRRLGPPTARVIA-------NTLGSLDAIERASVDE--- 760

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSS---EIENKKL 652
           L ++  +G  IA+++V ++ + +        + E   +  +G  +  +S+    +E K +
Sbjct: 761 LSQIDGIGPEIAESVVTWFASAKEPGDWRGTVLEAWKAAGVGAEQVEISTLPQTLEGKTV 820

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L    R  A+E +   G   S  +S+KTD +++G+N G+K  KA++LGV ++NE+
Sbjct: 821 VVTGSLIDFSRDSAKEAIISRGGRASGSVSKKTDWVVIGENAGAKAAKAEELGVPMLNED 880

Query: 713 QFLFLLQ 719
           QF  LL+
Sbjct: 881 QFKILLE 887


>gi|310287227|ref|YP_003938485.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17]
 gi|309251163|gb|ADO52911.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17]
          Length = 900

 Score =  280 bits (716), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 174/500 (34%), Positives = 262/500 (52%), Gaps = 41/500 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +LS E A +  + +   +      YY    P+  D+ YDA  R    +   FP L   
Sbjct: 64  VSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL--- 120

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +  
Sbjct: 121 DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPLPM 180

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEII 185
           T E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L   + +IPE +
Sbjct: 181 TCEVKIDGLALNLIYRNGVLEQGLTRGDGLTGEDITLNVRTIGSIPANLGGPAADIPEFV 240

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG+G
Sbjct: 241 EIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 300

Query: 245 K---------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIR 292
                      S      Q E        G PV+   R+  +F  I   + YY E    R
Sbjct: 301 TLRWGSGRPVGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEH---R 357

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
             + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +
Sbjct: 358 GDIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRV 417

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPVA L+PV + G+ ++  TLHN   +K         R G  + +GD V+V++AG+VIP+
Sbjct: 418 TPVAVLKPVYVAGSTVSRTTLHNPFEVK---------RKG--VLIGDTVVVRKAGDVIPE 466

Query: 413 VVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           +V  +V     R  D + F  P  CP C S++      K G      RC    +C AQ  
Sbjct: 467 LVGPVVERRKGREDDLREFVMPDRCPSCGSKLA---PAKEGD--KDIRCPNVESCPAQLT 521

Query: 470 ERLKHFVSRDAFNIEGLGKQ 489
           ER+ +  SR AF+IE LG Q
Sbjct: 522 ERIINLASRKAFDIEHLGDQ 541



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 19/222 (8%)

Query: 506 IPADIFTLQRRQQTS---TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
           +PAD   ++  ++T+   T  +   +  G+ +   ++D ++K R+  L R + +L IR +
Sbjct: 685 VPADAVVVRVDRKTTRNGTVDVPVYVRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 743

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNP 619
           G   AR +A  + S         + I     D LS I    +G  IA+++V ++   + P
Sbjct: 744 GPPTARLIASAFGSL--------DAIEQAGVDELSAIDG--IGPEIAESVVNWFAAAREP 793

Query: 620 RNICA--VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           R+     + A               +   +  K +V TG+L+   R  A+E + + G   
Sbjct: 794 RDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAIIERGGKA 853

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +S+KTD ++VG+N GSK  KA++LG+ +++E QF  LL+
Sbjct: 854 AGSVSKKTDWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 895


>gi|21225788|ref|NP_631567.1| DNA ligase [Streptomyces coelicolor A3(2)]
 gi|14495032|emb|CAC42149.1| putative DNA ligase [Streptomyces coelicolor A3(2)]
          Length = 723

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 204/701 (29%), Positives = 338/701 (48%), Gaps = 74/701 (10%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D  YD L R   A     PD      P+ P  K+ G    +   V H++P LSL+ +++ 
Sbjct: 65  DDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAG--GAAEGDVPHTVPMLSLDNVFSP 119

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164
           E+   +   + R   + D     F++ PK+DG  +  RY +G+      RGDG +GEDVS
Sbjct: 120 EEFTVWTASLAR---RIDREVTRFSVGPKLDGLAVAARYREGRLTRLITRGDGTAGEDVS 176

Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224
             I  +  +P  L+   P  +EVRGE+ ++   F   N+  I  G +P+ANPRNAA+G L
Sbjct: 177 HAIGTVEGLPGTLAE--PVTVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRNAAAGTL 234

Query: 225 RRLNPTDITRYLNFFVHGL----GKTSEIFAKGQ----YEMLQKMRCLGFPVNNGVRQAN 276
           R       T  + FF +GL    G  + +  + +     E+++    LG   + G    +
Sbjct: 235 R-AKERAYTVPMTFFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSAGTAVPD 293

Query: 277 TFHG----IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
              G    +V+   E+ ++R+ LP+ IDG+V K D  + ++  G  +R+PRW I++K   
Sbjct: 294 VVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAIAYKLPA 353

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN   I             
Sbjct: 354 VEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADIT-----------R 402

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           R +R+GD V+V RAG+VIP++   + + R  + QP  FP  CP C S    D++    + 
Sbjct: 403 RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGS----DIDTSEERW 458

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
               RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +   AD+F 
Sbjct: 459 ----RCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVADLADLFL 508

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L+R Q  +  ++      G+ S  NL  ++ + +   L R + +LG+R  G  ++R +A+
Sbjct: 509 LRREQLLALERM------GETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSMSRRIAR 562

Query: 573 YYLSYQNF-------AQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAIVEFYQ------ 617
           Y+ +  +         Q ++ I        ++ I    PL+ D +A A V   +      
Sbjct: 563 YFATMDHIRAADAEAMQRVDGIGVEKAPSVVAEIAELAPLI-DRLAAAGVNMTEPGATPP 621

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            P +    +    E +P  G     +   +       TG L+++ R++  E + + G   
Sbjct: 622 RPADTDGADGATAE-APGDGGPLAGMKVVVTG---AMTGNLERLSRNEMNELIERAGGRS 677

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+ +S+ T +++ G+  GSK  KA+QLGV++   E+F  L+
Sbjct: 678 SSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLV 718


>gi|224282769|ref|ZP_03646091.1| LigA [Bifidobacterium bifidum NCIMB 41171]
 gi|313139930|ref|ZP_07802123.1| LigA [Bifidobacterium bifidum NCIMB 41171]
 gi|313132440|gb|EFR50057.1| LigA [Bifidobacterium bifidum NCIMB 41171]
          Length = 900

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 174/500 (34%), Positives = 262/500 (52%), Gaps = 41/500 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +LS E A +  + +   +      YY    P+  D+ YDA  R    +   FP L   
Sbjct: 64  VSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL--- 120

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +  
Sbjct: 121 DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPLPM 180

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEII 185
           T E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L   + +IPE +
Sbjct: 181 TCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPAADIPEFV 240

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG+G
Sbjct: 241 EIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 300

Query: 245 ---------KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIR 292
                      S      Q E        G PV+   R+  +F  I   + YY E    R
Sbjct: 301 TLRWGSGRPAGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEH---R 357

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
             + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +
Sbjct: 358 GDIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRV 417

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPVA L+PV + G+ ++  TLHN   +K         R G  + +GD V+V++AG+VIP+
Sbjct: 418 TPVAVLKPVYVAGSTVSRTTLHNPFEVK---------RKG--VLIGDTVVVRKAGDVIPE 466

Query: 413 VVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           +V  +V     R  D + F  P  CP C S++      K G      RC    +C AQ  
Sbjct: 467 LVGPVVERRKGREDDLREFVMPDRCPSCGSKLA---PAKEGD--KDIRCPNVESCPAQLT 521

Query: 470 ERLKHFVSRDAFNIEGLGKQ 489
           ER+ +  SR AF+IE LG Q
Sbjct: 522 ERIINLASRKAFDIEHLGDQ 541



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 111/223 (49%), Gaps = 21/223 (9%)

Query: 506 IPADIFTLQRRQQTS---TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
           +PAD   ++  ++T+   T  +   +  G+ +   ++D ++K R+  L R + +L IR +
Sbjct: 685 VPADAVVVRVDRKTTRNGTVDVPVYVRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 743

Query: 563 GAEIARSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QN 618
           G   AR +A  + S +   Q  ++ + A +            +G  IA+++V ++   + 
Sbjct: 744 GPPTARLIASAFGSLEAIEQAGVDELSAIDG-----------IGPEIAESVVNWFAAARE 792

Query: 619 PRNICA--VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           PR+     + A               +   +  K +V TG+L+   R  A+E + + G  
Sbjct: 793 PRDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAIIERGGK 852

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  +S+KTD ++VG+N GSK  KA++LG+ +++E QF  LL+
Sbjct: 853 AAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 895


>gi|166215594|sp|Q93IZ8|DNLJ2_STRCO RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
          Length = 700

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 204/701 (29%), Positives = 338/701 (48%), Gaps = 74/701 (10%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D  YD L R   A     PD      P+ P  K+ G    +   V H++P LSL+ +++ 
Sbjct: 42  DDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAG--GAAEGDVPHTVPMLSLDNVFSP 96

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164
           E+   +   + R   + D     F++ PK+DG  +  RY +G+      RGDG +GEDVS
Sbjct: 97  EEFTVWTASLAR---RIDREVTRFSVGPKLDGLAVAARYREGRLTRLITRGDGTAGEDVS 153

Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224
             I  +  +P  L+   P  +EVRGE+ ++   F   N+  I  G +P+ANPRNAA+G L
Sbjct: 154 HAIGTVEGLPGTLAE--PVTVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRNAAAGTL 211

Query: 225 RRLNPTDITRYLNFFVHGL----GKTSEIFAKGQ----YEMLQKMRCLGFPVNNGVRQAN 276
           R       T  + FF +GL    G  + +  + +     E+++    LG   + G    +
Sbjct: 212 R-AKERAYTVPMTFFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSAGTAVPD 270

Query: 277 TFHG----IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
              G    +V+   E+ ++R+ LP+ IDG+V K D  + ++  G  +R+PRW I++K   
Sbjct: 271 VVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAIAYKLPA 330

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN   I             
Sbjct: 331 VEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADIT-----------R 379

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           R +R+GD V+V RAG+VIP++   + + R  + QP  FP  CP C S    D++    + 
Sbjct: 380 RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGS----DIDTSEERW 435

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
               RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +   AD+F 
Sbjct: 436 ----RCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVADLADLFL 485

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L+R Q  +  ++      G+ S  NL  ++ + +   L R + +LG+R  G  ++R +A+
Sbjct: 486 LRREQLLALERM------GETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSMSRRIAR 539

Query: 573 YYLSYQNF-------AQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAIVEFYQ------ 617
           Y+ +  +         Q ++ I        ++ I    PL+ D +A A V   +      
Sbjct: 540 YFATMDHIRAADAEAMQRVDGIGVEKAPSVVAEIAELAPLI-DRLAAAGVNMTEPGATPP 598

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            P +    +    E +P  G     +   +       TG L+++ R++  E + + G   
Sbjct: 599 RPADTDGADGATAE-APGDGGPLAGMKVVVTG---AMTGNLERLSRNEMNELIERAGGRS 654

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+ +S+ T +++ G+  GSK  KA+QLGV++   E+F  L+
Sbjct: 655 SSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLV 695


>gi|256783179|ref|ZP_05521610.1| DNA ligase [Streptomyces lividans TK24]
          Length = 690

 Score =  279 bits (714), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 204/701 (29%), Positives = 338/701 (48%), Gaps = 74/701 (10%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D  YD L R   A     PD      P+ P  K+ G    +   V H++P LSL+ +++ 
Sbjct: 32  DDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAG--GAAEGDVPHTVPMLSLDNVFSP 86

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164
           E+   +   + R   + D     F++ PK+DG  +  RY +G+      RGDG +GEDVS
Sbjct: 87  EEFTVWTASLAR---RIDREVTRFSVGPKLDGLAVAARYREGRLTRLITRGDGTAGEDVS 143

Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224
             I  +  +P  L+   P  +EVRGE+ ++   F   N+  I  G +P+ANPRNAA+G L
Sbjct: 144 HAIGTVEGLPGTLAE--PVTVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRNAAAGTL 201

Query: 225 RRLNPTDITRYLNFFVHGL----GKTSEIFAKGQ----YEMLQKMRCLGFPVNNGVRQAN 276
           R       T  + FF +GL    G  + +  + +     E+++    LG   + G    +
Sbjct: 202 R-AKERAYTVPMTFFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSAGTAVPD 260

Query: 277 TFHG----IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
              G    +V+   E+ ++R+ LP+ IDG+V K D  + ++  G  +R+PRW I++K   
Sbjct: 261 VVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAIAYKLPA 320

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN   I             
Sbjct: 321 VEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADIT-----------R 369

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           R +R+GD V+V RAG+VIP++   + + R  + QP  FP  CP C S    D++    + 
Sbjct: 370 RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGS----DIDTSEERW 425

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
               RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +   AD+F 
Sbjct: 426 ----RCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVADLADLFL 475

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L+R Q  +  ++      G+ S  NL  ++ + +   L R + +LG+R  G  ++R +A+
Sbjct: 476 LRREQLLALERM------GETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSMSRRIAR 529

Query: 573 YYLSYQNF-------AQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAIVEFYQ------ 617
           Y+ +  +         Q ++ I        ++ I    PL+ D +A A V   +      
Sbjct: 530 YFATMDHIRAADAEAMQRVDGIGVEKAPSVVAEIAELAPLI-DRLAAAGVNMTEPGATPP 588

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            P +    +    E +P  G     +   +       TG L+++ R++  E + + G   
Sbjct: 589 RPADTDGADGATAE-APGDGGPLAGMKVVVTG---AMTGNLERLSRNEMNELIERAGGRS 644

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+ +S+ T +++ G+  GSK  KA+QLGV++   E+F  L+
Sbjct: 645 SSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLV 685


>gi|283783245|ref|YP_003373999.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05]
 gi|283441754|gb|ADB14220.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05]
          Length = 962

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 176/511 (34%), Positives = 263/511 (51%), Gaps = 48/511 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+IEQA K  + L          YY    P   D+ YDA  R   A+  AFP L   + P
Sbjct: 97  LTIEQAAKLWAKLAAWAQSDQIAYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTP 153

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P +++GG  +     V H    +SL+ +++IE+L  +   + R  Q  +   +  T E
Sbjct: 154 QSPTHRVGGTFSNDFTSVKHPSRMMSLDDVFSIEELHDWYNSVIRDLQWDESQPLPMTCE 213

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEV 187
            KIDG  + + Y  G       RGDG +GED++  +R I  IP  L  +    IPE +E+
Sbjct: 214 VKIDGLALNLIYRNGTLEQGLTRGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEI 273

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK- 245
           RGEV++   DF  LNDE    GR  +ANPRNAA+G LR+ +P    TR L+FF HGLG+ 
Sbjct: 274 RGEVFMKWEDFRKLNDEQENAGRVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGEL 333

Query: 246 -----------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSI 291
                       ++      Y++ Q+    G PV+   R+   F  I   + YY +    
Sbjct: 334 RWKENTSHNNSETKFNQSDAYKLYQQW---GIPVSPYTRKVTNFSEIEEMIDYYGKH--- 387

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R+ + + +DG+V KVD+ +LQ QLG  +R+PRW I++K+  ++ +T L DI +Q+GRTG 
Sbjct: 388 RANILHALDGIVVKVDDRALQHQLGATSRAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGR 447

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVA LEPV + G+ I+  TLHN   ++            + + +GD V+V++AG+VIP
Sbjct: 448 VTPVAVLEPVTVAGSTISRTTLHNAYEVE-----------HKGVLIGDTVVVRKAGDVIP 496

Query: 412 KVVDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           ++V  ++  R     + + F  P +CP C +++      K G      RC     C AQ 
Sbjct: 497 ELVGPVLKAREGRENELRKFVMPEYCPSCGTKLAP---AKEGD--KDIRCPNVENCPAQL 551

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            ER+ H  SR AF+IE LG          ED
Sbjct: 552 TERIIHLASRQAFDIENLGDNAALALTNPED 582



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 26/258 (10%)

Query: 481 FNIEGLGKQ--QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE-------NILGFG 531
           +  EG  ++   L+  +  + P F + I A +   + ++ T   K         N+  + 
Sbjct: 695 YEAEGTSEKTTSLNEQWDPQYPKFQVPIDAKVVLWKNKRITRNAKTSDNAKETINVPWYT 754

Query: 532 DVSVTN---LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             S T    L +   K +N +L R + +L IR +G   AR +A  + S  N ++      
Sbjct: 755 RPSETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKASIE-- 812

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE-ALLKEVSPS--IGRHE-KNVS 644
                    L ++  VG  IAQA+  ++Q  ++    +  +LK    +  +G+ E  + +
Sbjct: 813 --------ELTQIDGVGPEIAQAVYNWFQQAKDPANWQFEVLKSWQEAGVVGKVEASSFA 864

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +  K +V TG+LQ   R  A+E +   G   S  +S+ T  +I+G+N GSK  KAQ+L
Sbjct: 865 QTLVGKTIVVTGSLQGFTRDSAKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQEL 924

Query: 705 GVKIMNEEQFLFLLQQYN 722
           G+ ++NE+QF  LL+  N
Sbjct: 925 GIPMLNEQQFNTLLKTGN 942


>gi|289767058|ref|ZP_06526436.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
 gi|289697257|gb|EFD64686.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
          Length = 703

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 204/701 (29%), Positives = 338/701 (48%), Gaps = 74/701 (10%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D  YD L R   A     PD      P+ P  K+ G    +   V H++P LSL+ +++ 
Sbjct: 45  DDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAG--GAAEGDVPHTVPMLSLDNVFSP 99

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164
           E+   +   + R   + D     F++ PK+DG  +  RY +G+      RGDG +GEDVS
Sbjct: 100 EEFTVWTASLAR---RIDREVTRFSVGPKLDGLAVAARYREGRLTRLITRGDGTAGEDVS 156

Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224
             I  +  +P  L+   P  +EVRGE+ ++   F   N+  I  G +P+ANPRNAA+G L
Sbjct: 157 HAIGTVEGLPGTLAE--PVTVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRNAAAGTL 214

Query: 225 RRLNPTDITRYLNFFVHGL----GKTSEIFAKGQ----YEMLQKMRCLGFPVNNGVRQAN 276
           R       T  + FF +GL    G  + +  + +     E+++    LG   + G    +
Sbjct: 215 R-AKERAYTVPMTFFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSAGTAVPD 273

Query: 277 TFHG----IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
              G    +V+   E+ ++R+ LP+ IDG+V K D  + ++  G  +R+PRW I++K   
Sbjct: 274 VVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAIAYKLPA 333

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN   I             
Sbjct: 334 VEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADIT-----------R 382

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           R +R+GD V+V RAG+VIP++   + + R  + QP  FP  CP C S    D++    + 
Sbjct: 383 RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGS----DIDTSEERW 438

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
               RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +   AD+F 
Sbjct: 439 ----RCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVADLADLFL 488

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L+R Q  +  ++      G+ S  NL  ++ + +   L R + +LG+R  G  ++R +A+
Sbjct: 489 LRREQLLALERM------GETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSMSRRIAR 542

Query: 573 YYLSYQNF-------AQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAIVEFYQ------ 617
           Y+ +  +         Q ++ I        ++ I    PL+ D +A A V   +      
Sbjct: 543 YFATMDHIRAADAEAMQRVDGIGVEKAPSVVAEIAELAPLI-DRLAAAGVNMTEPGATPP 601

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            P +    +    E +P  G     +   +       TG L+++ R++  E + + G   
Sbjct: 602 RPADTDGADGATAE-APGDGGPLAGMKVVVTG---AMTGNLERLSRNEMNELIERAGGRS 657

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+ +S+ T +++ G+  GSK  KA+QLGV++   E+F  L+
Sbjct: 658 SSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLV 698


>gi|311064086|ref|YP_003970811.1| NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010]
 gi|310866405|gb|ADP35774.1| LigA NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010]
          Length = 896

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 173/500 (34%), Positives = 262/500 (52%), Gaps = 41/500 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +LS E A +  + +   +      YY    P+  D+ YDA  R    +   FP L   
Sbjct: 64  VSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL--- 120

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +  
Sbjct: 121 DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPLPM 180

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEII 185
           T E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L   + +IPE +
Sbjct: 181 TCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPAADIPEFV 240

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG+G
Sbjct: 241 EIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 300

Query: 245 ---------KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIR 292
                      S      Q E        G PV+   R+  +F  I   + YY E    R
Sbjct: 301 TLRWGSGRPAGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEH---R 357

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
             + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLD+ +Q+GRTG +
Sbjct: 358 GDIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDVTVQVGRTGRV 417

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPVA L+PV + G+ ++  TLHN   +K         R G  + +GD V+V++AG+VIP+
Sbjct: 418 TPVAVLKPVYVAGSTVSRTTLHNPFEVK---------RKG--VLIGDTVVVRKAGDVIPE 466

Query: 413 VVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           +V  +V     R  D + F  P  CP C S++      K G      RC    +C AQ  
Sbjct: 467 LVGPVVERRKGREDDLREFVMPDRCPSCGSKLA---PAKEGD--KDIRCPNVESCPAQLT 521

Query: 470 ERLKHFVSRDAFNIEGLGKQ 489
           ER+ +  SR AF+IE LG Q
Sbjct: 522 ERIINLASRKAFDIEHLGDQ 541



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 111/223 (49%), Gaps = 21/223 (9%)

Query: 506 IPADIFTLQRRQQTS---TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
           +PAD   ++  ++T+   T  +   +  G+ +   ++D ++K R+  L R + +L IR +
Sbjct: 681 VPADAVVVRVDRKTTRNGTVDVPVYVRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 739

Query: 563 GAEIARSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QN 618
           G   AR +A  + S +   Q  ++ + A +            +G  IA+++V ++   + 
Sbjct: 740 GPPTARLIASAFGSLEAIEQAGVDELSAIDG-----------IGPEIAESVVNWFAAARE 788

Query: 619 PRNICA--VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           PR+     + A               +   +  K +V TG+L+   R  A+E + + G  
Sbjct: 789 PRDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAIIERGGK 848

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  +S+KTD ++VG+N GSK  KA++LG+ +++E QF  LL+
Sbjct: 849 AAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 891


>gi|254430924|ref|ZP_05044627.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001]
 gi|197625377|gb|EDY37936.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001]
          Length = 667

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 164/497 (32%), Positives = 253/497 (50%), Gaps = 36/497 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A + E  R  ++ L++ ++     YY    P++ D  YD L R    +  A P+L R   
Sbjct: 2   AGAPEPLRDRIAELQRLLTQAAHAYYVLDAPVMEDPVYDRLYRELLELEQAHPELIR--- 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS----- 125
           P+ P  ++GG        V H I  LSL+  ++ E+L  +  R+ +   +          
Sbjct: 59  PDSPTQRVGGSPAEGFRSVEHRIALLSLDNAFSTEELEAWYARLLKVLDRTPAAGEPLPD 118

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI- 184
           +    E KIDG  + + Y +G    AA RGDG  GE+++A +R I ++P  L L  P   
Sbjct: 119 LAMVGELKIDGNALALSYREGLLERAATRGDGERGEEITANVRTIQSVPLRLRLQAPPAW 178

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +EVRGE  I    F A+N E +A G   +ANPRNA +G LR+L+P  +  R L+FF + L
Sbjct: 179 VEVRGEALIPDGTFAAINAERLARGEPAFANPRNACAGTLRQLDPQVVADRRLDFFAYTL 238

Query: 244 --------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
                   G         Q+E L  +R  GF VN           + +++   +  R  L
Sbjct: 239 HLPDDWQPGPGDPPRPSSQWESLAWLRAAGFKVNPNAELLADLAAVEAFFTRWEPERRQL 298

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           PY  DG+V K+D+  LQ   G   ++PRW I+ K+A ++A +RLL +  Q+GRTG++TPV
Sbjct: 299 PYATDGVVVKLDDLRLQADAGFTQKAPRWAIALKYAAEEAPSRLLRLSCQVGRTGVVTPV 358

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A  EPV + G  ++ ATLHN D +  L           D+  GD ++V++AGE+IP+VV 
Sbjct: 359 AEFEPVALAGTSVSRATLHNADRLAEL-----------DLHAGDTIVVRKAGEIIPEVVR 407

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           ++   R   A+    P  CP C S +VR+         AA RC    +C A     L+H+
Sbjct: 408 VLPELRPAAARRLELPRHCPECGSELVREAG------EAATRCVNS-SCPAILRGALRHW 460

Query: 476 VSRDAFNIEGLGKQQLD 492
           VS+ A +++GLG + ++
Sbjct: 461 VSKAALDVDGLGSKLIE 477


>gi|182434930|ref|YP_001822649.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|254778149|sp|B1VUC2|DNLJ1_STRGG RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|178463446|dbj|BAG17966.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 719

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 205/712 (28%), Positives = 340/712 (47%), Gaps = 78/712 (10%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D  YD L R   A     P+   ++ P G   K+ G    ++  V H++P LSL+ +++ 
Sbjct: 48  DDAYDRLARGIAAYEADHPEEVLADSPTG---KVAG--GAAVGDVPHTVPMLSLDNVFSA 102

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164
           E   +F+T      ++       +++EPK+DG  +  RY  G+F     RGDG +GEDVS
Sbjct: 103 E---QFVTWTASLERRIGRPVTAWSVEPKLDGLAVAARYRDGRFERLITRGDGTAGEDVS 159

Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224
               A+  +P  L+   P  IEVRGE+ ++   F   N      G  P+ANPRN A+G L
Sbjct: 160 HAAGAVVGLPERLAE--PVTIEVRGEILMTNEQFAQGNAIRTEHGGAPFANPRNGAAGTL 217

Query: 225 R---RLNPTDITRYLNFFVHGL------GKTSEIFAKGQY-EMLQKMRCLGFPVNNGVR- 273
           R   R    + T    FF +G       G+  E  A+  + E+L  +  LG     G   
Sbjct: 218 RAKDRAYRVETT----FFAYGALPLPDSGELGEALAELPHSEVLAYVAGLGVHTAAGTAV 273

Query: 274 ---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
              +A T   + +  + + ++R+ LP+ IDG+V K D  + Q++ G   R+PRW +++K 
Sbjct: 274 APLRATTVEEVQARVDGIGALRAALPFGIDGIVIKADLAADQQEAGSGTRAPRWAVAYKL 333

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
              +  TRLL ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I           
Sbjct: 334 PAVEKITRLLAVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADIT---------- 383

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
             RD+R+GD+V+V +AG++IP++   +V+ R  D  P +FP  CP C S +  D + +  
Sbjct: 384 -RRDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIAFPESCPQCGSEI--DASEQR- 439

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
                 RCT G  C  + +  + +   RD  +IEGLG  ++         A  +   AD+
Sbjct: 440 -----WRCTRGRDC--RLVASVSYAAGRDQLDIEGLGSTRVVQLVD----AGLVADFADL 488

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           FTL+R Q  +  ++      G+ S  NL  +I   R   L R   +LG+R  G  ++R +
Sbjct: 489 FTLRREQLLALDRM------GETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSRRI 542

Query: 571 AKYYLSYQNF----AQEINNIIAHNNDDWLSLIR-----VPLVGDIIAQAI------VEF 615
           A+++ +        A+ +  +     +   +++       PL+G ++A  +         
Sbjct: 543 ARHFATMDRIVAADAESLQRVDGIGKEKAAAVVAELVELAPLIGKLVAAGVSMTEPGATP 602

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT----GTLQKIQRHKAQEYVT 671
             +P    A      +     G      +  +    +V T    G L+K+ R++  E + 
Sbjct: 603 PPDPGTEEAAAPATADAGAPGGDAATGSALPLAGMTVVVTGAMSGALEKLSRNQMNELIE 662

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + G   S+ +SR+T +++ G+  GSK  KA+ LGV+I   E+F  L+  + T
Sbjct: 663 RAGGKSSSSVSRRTTLLVAGEKAGSKRAKAEDLGVRIAVPEEFAELVGAFLT 714


>gi|298252820|ref|ZP_06976614.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1]
 gi|297533184|gb|EFH72068.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1]
          Length = 962

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 176/511 (34%), Positives = 263/511 (51%), Gaps = 48/511 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+IEQA K  + L          YY    P   D+ YDA  R   A+  AFP L   + P
Sbjct: 97  LTIEQAAKLWAKLAAWAQSDQIAYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTP 153

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P +++GG  +     V H    +SL+ +++IE+L  +   + R  Q  +   +  T E
Sbjct: 154 QSPTHRVGGTFSNDFTSVKHPSRMMSLDDVFSIEELHDWYNSVIRDLQWDESKPLPMTCE 213

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEV 187
            KIDG  + + Y  G       RGDG +GED++  +R I  IP  L  +    IPE +E+
Sbjct: 214 VKIDGLALNLIYRNGTLEQGLTRGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEI 273

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK- 245
           RGEV++   DF  LNDE    GR  +ANPRNAA+G LR+ +P    TR L+FF HGLG+ 
Sbjct: 274 RGEVFMKWEDFRKLNDEQENAGRVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGEL 333

Query: 246 -----------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSI 291
                       ++      Y++ Q+    G PV+   R+   F  I   + YY +    
Sbjct: 334 RWKENTSHNNSETKFNQSDAYKLYQQW---GIPVSPYTRKVTNFSEIEEMIDYYGKH--- 387

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R+ + + +DG+V KVD+ +LQ QLG  +R+PRW I++K+  ++ +T L DI +Q+GRTG 
Sbjct: 388 RANILHALDGIVVKVDDRALQHQLGATSRAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGR 447

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVA LEPV + G+ I+  TLHN   ++            + + +GD V+V++AG+VIP
Sbjct: 448 VTPVAVLEPVTVAGSTISRTTLHNAYEVE-----------HKGVLIGDTVVVRKAGDVIP 496

Query: 412 KVVDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           ++V  ++  R     + + F  P +CP C +++      K G      RC     C AQ 
Sbjct: 497 ELVGPVLKAREGRENELRKFVMPEYCPSCGTKLAP---AKEGD--KDIRCPNVENCPAQL 551

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            ER+ H  SR AF+IE LG          ED
Sbjct: 552 TERIIHLASRQAFDIENLGDNAALALTNPED 582



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 24/237 (10%)

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIE-------NILGFGDVSVTN---LYDSINKRRNIS 549
           P F + I A +   + ++ T   K         N+  +   S T    L +   K +N +
Sbjct: 716 PKFQVPIDAKVVLWKNKRITRNAKTSDNAKETINVPWYTRPSETTRSMLEEIAQKGKNAA 775

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IR +G   AR +A  + S  N ++               L ++  VG  IA
Sbjct: 776 LWRVLVALSIRRLGPPTARLIAANFGSLDNISKASIE----------ELTQIDGVGPEIA 825

Query: 610 QAIVEFYQNPRNICAVE-ALLKEVSPS--IGRHE-KNVSSEIENKKLVFTGTLQKIQRHK 665
           QA+  ++Q  ++    +  +LK    +  +G+ E  + +  +  K +V TG+LQ   R  
Sbjct: 826 QAVYNWFQQAKDPANWQFEVLKSWQEAGVVGKVETSSFAQTLVGKTIVVTGSLQGFTRDS 885

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E +   G   S  +S+ T  +I+G+N GSK  KAQ+LG+ ++NE+QF  LL+  N
Sbjct: 886 AKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQELGIPMLNEQQFNALLKTGN 942


>gi|297243530|ref|ZP_06927462.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD]
 gi|296888575|gb|EFH27315.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD]
          Length = 922

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 174/508 (34%), Positives = 260/508 (51%), Gaps = 42/508 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+IEQA K  + L          YY    P   D+ YDA  R   A+  AFP L   + P
Sbjct: 57  LTIEQAAKLWAKLAAWAQSDQIAYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTP 113

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P +++GG  +     V H    +SL+ +++IE+L  +   + R  Q  +   +  T E
Sbjct: 114 QSPTHRVGGTFSNDFTSVKHPSRMMSLDDVFSIEELHDWYNSVIRDLQWDESQPLPMTCE 173

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEV 187
            KIDG  + + Y  G       RGDG +GED++  +R I  IP  L  +    IPE +E+
Sbjct: 174 VKIDGLALNLIYRNGTLEQGLTRGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEI 233

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK- 245
           RGEV++   DF  LNDE    GR  +ANPRNAA+G LR+ +P    TR L+FF HGLG+ 
Sbjct: 234 RGEVFMKWEDFRKLNDEQENAGRVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGEL 293

Query: 246 -----------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
                       ++      Y++ Q+    G PV+   R+   F  I    +     R+ 
Sbjct: 294 RWKENTSHNNSETKFNQSDAYKLYQQW---GIPVSPYTRKVTNFSEIEEMIDYYGKHRAN 350

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+ +LQ QLG  +R+PRW I++K+  ++ +T L DI +Q+GRTG +TP
Sbjct: 351 ILHALDGIVVKVDDRALQHQLGATSRAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGRVTP 410

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA LEPV + G+ I+  TLHN   ++            + + +GD V+V++AG+VIP++V
Sbjct: 411 VAVLEPVTVAGSTISRTTLHNAYEVE-----------HKGVLIGDTVVVRKAGDVIPELV 459

Query: 415 DIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R     + + F  P +CP C +++      K G      RC     C AQ  ER
Sbjct: 460 GPVLKAREGRENELRKFVMPEYCPSCGTKLAP---AKEGD--KDIRCPNVENCPAQLTER 514

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           + H  SR AF+IE LG          ED
Sbjct: 515 IIHLASRQAFDIENLGDNAALALTNPED 542



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 24/237 (10%)

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIE-------NILGFGDVSVTN---LYDSINKRRNIS 549
           P F + I A +   + ++ T   K         N+  +   S T    L +   K +N +
Sbjct: 676 PKFQVPIDAKVVLWKNKRITRNAKTSDNAKETINVPWYTRPSETTRSMLEEIAQKGKNAA 735

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IR +G   AR +A  + S  N ++               L ++  VG  IA
Sbjct: 736 LWRVLVALSIRRLGPPTARLIAANFGSLDNISKASIE----------ELTQIDGVGPEIA 785

Query: 610 QAIVEFYQNPRNICAVE-ALLKEVSPS--IGRHE-KNVSSEIENKKLVFTGTLQKIQRHK 665
           QA+  ++Q  ++    +  +LK    +  +G+ E  + +  +  K +V TG+LQ   R  
Sbjct: 786 QAVYNWFQQAKDPANWQFEVLKSWQEAGVVGKVEASSFAQTLVGKTIVVTGSLQGFTRDS 845

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E +   G   S  +S+ T  +I+G+N GSK  KAQ+LG+ ++NE+QF  LL+  N
Sbjct: 846 AKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQELGIPMLNEQQFNTLLKTGN 902


>gi|310830411|ref|YP_003965512.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2]
 gi|309249878|gb|ADO59444.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2]
          Length = 662

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 221/725 (30%), Positives = 363/725 (50%), Gaps = 91/725 (12%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I  A++ +  L  EI  HD+ Y Q+ KP+I D EY+ L      +   +P+      P+
Sbjct: 3   TIFNAQQRIKQLTSEIRKHDELYDQF-KPVISDQEYNNLYYELLDLEKQYPEFVI---PD 58

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P +KI   +   L KV HS    S EK+   +++  F+ R    ++ K        ++ 
Sbjct: 59  SPTHKIYTVLVDGLEKVRHSSFMGSQEKMKTWDEVVSFMNR----YEGK------VLVQH 108

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGE 190
           K+DG  I + Y  G    A  RG+G  G+++   +R I  +P     NIP    +E+R E
Sbjct: 109 KLDGLTIVLTYMDGLLQKAVTRGNGEIGQNIIHTVRTIKNVPA----NIPFKGRLEIRME 164

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-----DITRYLNFFVHGLGK 245
             I   +F  +N +        ++NPRN  SG L +LN +     ++   +   VH  G 
Sbjct: 165 GIIPYAEFERINVD------GAFSNPRNLVSGTLNQLNASIASERNVQGIVFDIVHIEGM 218

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV---SYYNEMK-SIRSTLPYDIDG 301
           T    +    E L+ ++  GF     V    T  G+    +Y  EM+ + R TLP+ IDG
Sbjct: 219 TFNKIS----EQLRFLKEQGFTTVESVAFEQTVEGLSQMNAYLQEMEENTRKTLPFMIDG 274

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           LV K DE S +++LG  ++ PRW  ++KFA  +A+T +L ++  + RTG +TPVA L  V
Sbjct: 275 LVIKFDELSAKEKLGNTSKHPRWSAAYKFASLEATTTILGVEHSVARTGQITPVALLNTV 334

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           +I    ++ A+L N   I+            +DIR+GDRV V RA +VIP+V   I   R
Sbjct: 335 DIDSVDVSRASLANYGMIE-----------KKDIRIGDRVFVIRANDVIPQVTASIKEMR 383

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             + Q    P+ CP C S           + V A+    G  CS Q   +++HF SR A 
Sbjct: 384 TGNEQLIQTPTCCPKCGSPT---------EFVGAYLYCRGEQCSPQLQGKIEHFASRKAL 434

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI  LG   ++ FFK+      IR   D++ LQ +++    +I ++ GFG  S T L   
Sbjct: 435 NINSLGTSTVELFFKNG----IIRHFLDLYNLQEKEE----QICSLEGFGKKSFTKLQKE 486

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND--DW-LSL 598
           + + +   L + + +L ++H+G   ++ L+K Y       ++I+ I+  + D  D+  +L
Sbjct: 487 LERVKKEPLHKVLIALSVKHLGETKSKELSKVY-------KDIDAIMNASEDAEDFRAAL 539

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSE---IENK 650
           + +P  G  I  +IV F+ +        +L++++  SIG       + N+S E   +  +
Sbjct: 540 LALPDFGSAITDSIVAFFTSEEG----RSLIRKMQ-SIGFTMKSEFDTNISQENLPLSGQ 594

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TGTL  + R +A+E +  LGA VS  +S+KT  ++VG    SK +KA +LGV+++ 
Sbjct: 595 TVVVTGTLGAMGRDEAKEKLEALGAKVSGSISKKTSFVVVGTGK-SKHDKAIELGVRVVY 653

Query: 711 EEQFL 715
           E++FL
Sbjct: 654 EDEFL 658


>gi|251799680|ref|YP_003014411.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. JDR-2]
 gi|247547306|gb|ACT04325.1| DNA ligase, NAD-dependent [Paenibacillus sp. JDR-2]
          Length = 677

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 210/717 (29%), Positives = 340/717 (47%), Gaps = 76/717 (10%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L  EIS H+  YY   +P I D++YD L     A+      +     P+ P  ++GG
Sbjct: 14  MQELAAEISAHNYSYYTLDQPTINDADYDKLYDELVALEADTGVVL----PDSPTQRVGG 69

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKDDNSIF----FTLEP 132
           E+        H     SL+K  + EDL  +  R+ +    +  K  +        + +E 
Sbjct: 70  ELLKGFEPHRHRARLWSLDKAQDTEDLLAWNQRVLKAINDYNAKHPEEEPLPQPNYVIEL 129

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRG 189
           K DG  + + YE G+ + A+ RG+G  GE + A ++ I ++P    L IP    IIEV+G
Sbjct: 130 KFDGLTLNLTYENGQLIQASTRGNGTVGEGILAQVKTIRSVP----LTIPFGDGIIEVQG 185

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248
           E  ++    L++ +       +P  N RNAA+G LR LNP T   R LN F + +G    
Sbjct: 186 EGIMN----LSVLERYNQTAAEPLKNARNAAAGALRNLNPKTTAERKLNAFFYNVGFAEG 241

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      EM Q ++   F VN      N+   +      +   R  L + IDG V K+ +
Sbjct: 242 VSFSNHREMQQFLKDNLFKVNPYALYLNSIEEVQEELLRIAEKRLELDFLIDGAVVKLTD 301

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              ++ LG   + PRW ++ KF  ++A+T L  +  ++GRTG +TPVAR+E V + G  +
Sbjct: 302 MRTREALGYTDKFPRWAVAFKFEAEEAATVLESVSWEVGRTGKITPVARVEAVELAGVTV 361

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
            N TL+N          G + R      +G  V ++R+ +VIP+++  +  E     Q  
Sbjct: 362 QNCTLNN---------IGDIERKNLKHALGTLVSIRRSNDVIPEILGKVDEE---PGQEI 409

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP C +    +L  +   L     C   L C  Q + R+ HF SRDA +IE    
Sbjct: 410 VFPAVCPACGT----ELEQRGAHLF----CNNKLGCRPQIIGRITHFSSRDAMDIEAFSV 461

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
              +  +   D    +  PAD++ L         +      FGD     L D+I K ++ 
Sbjct: 462 MTAEQLYADCD----VHDPADLYALGYDDLIKLDR------FGDKKARKLLDAIEKSKDR 511

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  F+F+LGI + G    + LA +Y S       ++ +++   ++   L+ +  VG I+
Sbjct: 512 DLAAFLFALGIPNTGKATTKMLADHYGS-------LDGVMSATAEE---LVGLQDVGAIV 561

Query: 609 AQAIVEFYQNPRNICAVEALLKE-------VSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           A +IV ++ +P  I A  A ++E         P + R +   S     K +V TGTL K+
Sbjct: 562 ADSIVNYFADPI-IAASIARMREHGVKAEAEQPVVVRQDSIFSG----KTVVLTGTLSKM 616

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A + +   GA VS  +S+KTD +I G++ GSKL KA+ LG+ ++ +E  L  L
Sbjct: 617 SRDEAAKKLEAFGAKVSGSVSKKTDFVIAGESAGSKLTKARDLGITVIEDEDELLRL 673


>gi|167465474|ref|ZP_02330563.1| DNA ligase, NAD-dependent [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 579

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 186/601 (30%), Positives = 302/601 (50%), Gaps = 57/601 (9%)

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EI 184
           F +E K DG  I + Y++G  V A+ RG+G  GE + A ++ I ++P    L IP    +
Sbjct: 24  FAVELKFDGLTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVP----LEIPYKEGL 79

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           IEV+GE  +     L++ D+      +P  N RNAA+G LR LNP     R L  F + +
Sbjct: 80  IEVQGEGMM----LLSVLDQYNQTAAEPLKNARNAAAGALRNLNPKVTAERRLTAFFYNV 135

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G +         EM+  ++   F VN  V+  NT   +     +++  R    + IDG V
Sbjct: 136 GFSDRKQFMNHQEMIAFLKENHFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDFLIDGAV 195

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV +   ++ LG   + PRW I++KF  ++ +T L  +  ++GRTG +TPVA++EPV +
Sbjct: 196 IKVTDIRTREVLGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAKVEPVEL 255

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  + N TL+N          G + R      +G  V ++R+ +VIP+++  +  E   
Sbjct: 256 AGVTVQNCTLNN---------IGDIERKNLKHALGSLVYIRRSNDVIPEILGKVTEE--I 304

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D +   +P  CP C +    +L  +   L     C   L C  Q + R+ HF SRDA +I
Sbjct: 305 DGEEIKYPEHCPACGT----ELEQRGAHLF----CPNRLGCKPQLIGRITHFASRDAMDI 356

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           E       +  ++  D    +R PAD++ L      +   I  +  FG+    NL D+I 
Sbjct: 357 ETFSVMTAEQLYQQLD----VRDPADLYDL------TYDDIIQLPRFGEKKANNLLDAIE 406

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +   L  F+F+LGI + G    + LA+++ S       +             LI +P 
Sbjct: 407 KSKERDLSSFLFALGIPNTGKTTTKVLAEHFRSLDKVMDAVVE----------ELIALPD 456

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           VG I+A +I  F+++P  I ++  + K     ++    G+ E +       K +V TGTL
Sbjct: 457 VGGIVADSIYTFFRDPIMIESIRRMKKAGVQAQMEAEEGKAEIDPGHPFYGKTIVLTGTL 516

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFL 717
             + R +A + +  LGA V+  +S+KTDI+I G+N GSKL KA+QLG++++ NE++ L L
Sbjct: 517 SSMSRDEAAKKLESLGAKVTGSVSKKTDIVIAGENAGSKLAKAEQLGIRVIDNEDELLHL 576

Query: 718 L 718
           L
Sbjct: 577 L 577


>gi|119025970|ref|YP_909815.1| LigA [Bifidobacterium adolescentis ATCC 15703]
 gi|166215398|sp|A1A200|DNLJ_BIFAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118765554|dbj|BAF39733.1| LigA [Bifidobacterium adolescentis ATCC 15703]
          Length = 892

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 171/503 (33%), Positives = 268/503 (53%), Gaps = 43/503 (8%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + ++S E A +  + +   +      YY    P+  D+ YDA  R   ++   FP L 
Sbjct: 61  VDVASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSL- 119

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR++   + R     +   +
Sbjct: 120 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPL 177

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+ L+    +IPE
Sbjct: 178 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPE 237

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242
            +E+RGEV++  +DF  LN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 238 FVEIRGEVFMRWDDFNKLNAENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297

Query: 243 LGK---------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKS 290
           +G                  Q E  +  +  G PV+   R+  +F  I   + YY E   
Sbjct: 298 IGSLRWGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEH-- 355

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG
Sbjct: 356 -RGDIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTG 414

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVA L+PV + G+ ++  TLHN           +V R G  + +GD V+V++AG+VI
Sbjct: 415 RVTPVAVLKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVI 463

Query: 411 PKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSA 466
           P++V  ++     R  + + F  P+ CP C +    +L P K G      RC    +C A
Sbjct: 464 PELVGPVLERRKGREGELRRFVMPTRCPSCGA----ELAPAKEGD--KDIRCPNVESCPA 517

Query: 467 QQLERLKHFVSRDAFNIEGLGKQ 489
           Q  ER+ +  SR AF+IE LG Q
Sbjct: 518 QLTERIINLASRKAFDIEHLGDQ 540



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 101/186 (54%), Gaps = 15/186 (8%)

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           + D ++K R+  L R + +L IR +G   AR++A  + +         + I H + D LS
Sbjct: 711 MLDEMDKARHADLWRVLVALSIRRLGPPTARTIASAFGTL--------DAIEHASVDELS 762

Query: 598 LIRVPLVGDIIAQAIVEFY---QNPRNI-CAVEALLKEVSPSIGRHEKN-VSSEIENKKL 652
             ++  +G  IA+++V ++   + P N   AV    K     +G+ + + +   +  K +
Sbjct: 763 --QIDGIGSEIAESVVTWFTAAREPGNWRGAVLDAWKAAGVGVGQAQASGLPQTLAGKTV 820

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L+   R  A+E +   G   +  +S+KTD ++VG+N GSK  KA++LG+ ++NE+
Sbjct: 821 VVTGSLEGFSRDSAKEAIVLRGGKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLNED 880

Query: 713 QFLFLL 718
           QF  LL
Sbjct: 881 QFKQLL 886


>gi|315452902|ref|YP_004073172.1| DNA ligase [Helicobacter felis ATCC 49179]
 gi|315131954|emb|CBY82582.1| DNA ligase [Helicobacter felis ATCC 49179]
          Length = 733

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 221/742 (29%), Positives = 350/742 (47%), Gaps = 115/742 (15%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P++ D EYD L ++     HA P+      P     ++G  +   L K TH   
Sbjct: 22  YYVLDDPLVSDFEYDTLYQQIQDYEHAHPEQILEHSPT---QRVGDALLSYLPKHTHLER 78

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+ ++++E L+ +I RI++ +         FT  PK+DG  + + Y++GK V A  R
Sbjct: 79  MWSLDNVFDLEGLQTWIARIFKVYPHAR-----FTCSPKLDGVSLNLFYDQGKLVSATTR 133

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           G+G  GE V+   + IP+IP  L +   E +E+RGEV I   DF  +N E   + +  +A
Sbjct: 134 GNGIEGELVTHIAKTIPSIP--LRIAPTEPLEIRGEVTIENADFEKINAERAKLNQPLFA 191

Query: 215 NPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNG 271
           NPRNAA+G LR+L+P     R L+F   GLG+ +      K   + L +   L  P +  
Sbjct: 192 NPRNAAAGSLRQLDPRISAKRKLSFTPWGLGRCAPTLPSFKAMMDCLLENHFLPMPFS-- 249

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
                +   I   Y E+ + R      +DG+V  VD+F++QK+LG   ++PR+ I++KF 
Sbjct: 250 --LCGSVEEIQQVYTELHAQRERAKVGMDGMVVVVDDFAMQKELGFTLKAPRFAIAYKFP 307

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             +  TRLL++  Q+GR+G +TPVARLEPVN+ GA I  ATL++   I+           
Sbjct: 308 ALEKHTRLLEVIAQVGRSGAITPVARLEPVNLDGAQIARATLNSYTDIQ----------- 356

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR-------- 443
            +D+++ D V+V R+G+VIP+V+  +V+ R    +P   P+ CP C+S + +        
Sbjct: 357 QKDLQLNDMVVVLRSGDVIPQVIKPLVHLRDGSQKPIIPPNHCPSCESLLEQQPLNICPQ 416

Query: 444 -----------DLNPKTGKLVA----------------------AHRCTGGL-------- 462
                      +  P   +                          +RC   L        
Sbjct: 417 CHLPLLLKDKPNFCPSCARFAPHAHLKNARSCPSCAQALEYKPFCYRCNLDLSAHARALC 476

Query: 463 ----ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
               +CSA+    L +F S+    I GLG    D   K    A  I   +D++TL     
Sbjct: 477 CVNPSCSAKLHASLVYFASKQGLEIAGLG----DKVVKQLLEAKLISQISDLYTL----- 527

Query: 519 TSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK--- 572
               ++E++L   G+      NL D+I K ++  L RFI +LGI ++G   ++ LA    
Sbjct: 528 ----RLEDLLQLEGWKHKRAQNLLDAIAKTKHAPLWRFINALGIENIGKGASKKLAGILG 583

Query: 573 ---YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI-IAQAIVEFYQNPRNICAVEAL 628
              +   Y  + +    I     +D          GD   A+A  EF Q  R    +  L
Sbjct: 584 LEVFDQDYSGYQRAFKKIFQGAREDQ--------KGDYKSARAFWEFVQTHR--AKIAHL 633

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           ++ + P+I           + K +V TG+   I R   ++Y+  LGA V   LS KTD++
Sbjct: 634 MRLIEPTIAEKRAPQCGFFQGKVVVITGSF-SIPRDALRQYLEDLGAEVKGHLSAKTDLL 692

Query: 689 IVGDNPGSKLEKAQQLGVKIMN 710
           + GD PGSKLE+A++  + IM 
Sbjct: 693 LCGDKPGSKLEEAKKHNISIMG 714


>gi|326775447|ref|ZP_08234712.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
 gi|326655780|gb|EGE40626.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
          Length = 712

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 203/710 (28%), Positives = 338/710 (47%), Gaps = 78/710 (10%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D  YD L R   A     P+   ++ P G   K+ G    ++  V H++P LSL+ +++ 
Sbjct: 41  DDAYDRLARGIAAYEADHPEEVLADSPTG---KVAG--GAAVGDVPHTVPMLSLDNVFSA 95

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164
           E   +F+T      ++       +++EPK+DG  +  RY  G+F     RGDG +GEDVS
Sbjct: 96  E---QFVTWTASLERRIGRPVTAWSVEPKLDGLAVAARYRDGRFERLITRGDGTAGEDVS 152

Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224
               A+  +P  L+   P  IEVRGE+ ++   F   N      G  P+ANPRN A+G L
Sbjct: 153 HAAGAVVGLPERLAE--PVTIEVRGEILMTNEQFAQGNAIRTEYGGAPFANPRNGAAGTL 210

Query: 225 R---RLNPTDITRYLNFFVHGL------GKTSEIFAKGQY-EMLQKMRCLGFPVNNGVR- 273
           R   R    + T    FF +G       G+  E  A+  + E+L  +  LG     G   
Sbjct: 211 RAKDRAYRVETT----FFAYGALPLPDSGELGETLAELPHSEVLAYVAGLGVHTAAGTAV 266

Query: 274 ---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
              +A T   + +  + + ++R+ LP+ IDG+V K D  + Q++ G   R+PRW +++K 
Sbjct: 267 APLRATTVEEVQARVDGIGALRAALPFGIDGIVIKADLAADQQEAGSGTRAPRWAVAYKL 326

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
              +  TRLL ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I           
Sbjct: 327 PAVEKITRLLAVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADIT---------- 376

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
             RD+R+GD+V+V +AG++IP++   +V+ R  D  P +FP  CP C S +  D + +  
Sbjct: 377 -RRDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIAFPESCPQCGSEI--DASEQR- 432

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
                 RCT G  C  + +  + +   RD  +IEGLG  ++         A  +   AD+
Sbjct: 433 -----WRCTRGRDC--RLVASVSYAAGRDQLDIEGLGSTRVVQLVD----AGLVADFADL 481

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           FTL+R Q  +  ++      G+ S  NL  +I   R   L R   +LG+R  G  ++R +
Sbjct: 482 FTLRREQLLALDRM------GETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSRRI 535

Query: 571 AKYYLSYQNF----AQEINNIIAHNNDDWLSLIR-----VPLVGDIIAQAI------VEF 615
           A+++ +        A+ +  +     +   +++       PL+G ++   +         
Sbjct: 536 ARHFATMDRIVAADAESLQRVDGIGKEKAAAVVAELVELAPLIGKLVVAGVSMTEPGATP 595

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT----GTLQKIQRHKAQEYVT 671
             +P    A      +     G      +  +    +V T    G L+K+ R++  E + 
Sbjct: 596 PPDPGTEEAAAPATADAGAPGGDAATGSALPLAGMTVVVTGAMSGALEKLSRNQMNELIE 655

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           + G   S+ +SR+T +++ G+  GSK  KA+ LGV+I   E+F  L+  +
Sbjct: 656 RAGGKSSSSVSRRTTLLVAGEKAGSKRAKAEDLGVRIAVPEEFAELVGAF 705


>gi|154488672|ref|ZP_02029521.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis
           L2-32]
 gi|154082809|gb|EDN81854.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis
           L2-32]
          Length = 890

 Score =  277 bits (708), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 171/503 (33%), Positives = 267/503 (53%), Gaps = 43/503 (8%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + ++S E A +  + +   +      YY    P+  D+ YDA  R   ++   FP L 
Sbjct: 59  VDVASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSL- 117

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR++   + R     +   +
Sbjct: 118 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPL 175

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+ L+    +IPE
Sbjct: 176 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPE 235

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242
            +E+RGEV++  +DF  LN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 236 FVEIRGEVFMRWDDFNKLNAENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 295

Query: 243 LGK---------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKS 290
           +G                  Q E  +  +  G PV+   R+  +F  I   + YY E   
Sbjct: 296 IGSLRWGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEH-- 353

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG
Sbjct: 354 -RGDIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTG 412

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVA L+PV + G+ ++  TLHN           +V R G  + +GD V+V++AG+VI
Sbjct: 413 RVTPVAVLKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVI 461

Query: 411 PKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSA 466
           P++V  ++     R    + F  P+ CP C +    +L P K G      RC    +C A
Sbjct: 462 PELVGPVLERRKGREGQIRRFVMPTRCPSCGA----ELAPAKEGD--KDIRCPNVESCPA 515

Query: 467 QQLERLKHFVSRDAFNIEGLGKQ 489
           Q  ER+ +  SR AF+IE LG Q
Sbjct: 516 QLTERIINLASRKAFDIEHLGDQ 538



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 101/186 (54%), Gaps = 15/186 (8%)

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           + D ++K R+  L R + +L IR +G   AR++A  + +         + I H + D LS
Sbjct: 709 MLDEMDKARHADLWRVLVALSIRRLGPPTARTIASAFGTL--------DAIEHASVDELS 760

Query: 598 LIRVPLVGDIIAQAIVEFY---QNPRNI-CAVEALLKEVSPSIGRHEKN-VSSEIENKKL 652
             ++  +G  IA+++V ++   + P N   AV    K     +G+ + + +   +  K +
Sbjct: 761 --QIDGIGPEIAESVVTWFTAAREPGNWRGAVLDAWKAAGVGVGQAQASGLPQTLAGKTV 818

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L+   R  A+E +   G   +  +S+KTD ++VG+N GSK  KA++LG+ ++NE+
Sbjct: 819 VVTGSLEGFSRDSAKEAIVLRGGKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLNED 878

Query: 713 QFLFLL 718
           QF  LL
Sbjct: 879 QFKQLL 884


>gi|257793742|ref|ZP_05642721.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
 gi|257787714|gb|EEV26054.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
          Length = 425

 Score =  276 bits (707), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 164/456 (35%), Positives = 257/456 (56%), Gaps = 44/456 (9%)

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G   +SPRW
Sbjct: 1   GFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRW 60

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED I     
Sbjct: 61  AIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIH---- 116

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C   +VR 
Sbjct: 117 -------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCGHELVR- 168

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                G++  A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE     I
Sbjct: 169 ---IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE----LI 218

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           +  ADIF L         ++      G   V NL  +I + ++ SLE  +F LGIRH+G 
Sbjct: 219 KDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLGIRHLGV 272

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
           + ++ LA+ Y       + I+ ++     +   L+ +  +GD +AQ++V + +N  +I A
Sbjct: 273 KASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN-EDIRA 321

Query: 625 VEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           +   LK+     +   I   +     E   K +V TG L ++ R++A +++   GA V++
Sbjct: 322 LIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQGAKVTS 381

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            +++ TD++I G++ GSKL KAQ LG++I  E+QF+
Sbjct: 382 SVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 417


>gi|311747945|ref|ZP_07721730.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
 gi|126574918|gb|EAZ79276.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
          Length = 791

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 166/481 (34%), Positives = 258/481 (53%), Gaps = 32/481 (6%)

Query: 40  KPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLE 99
           + +I D E+D L      +   FPDL +   P+ P  ++GG +      V H+   LSL 
Sbjct: 4   QAVISDFEFDKLLEELVQLETEFPDLLQ---PDSPSQRVGGTITKEFETVVHAYKMLSLG 60

Query: 100 KIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159
             ++ E+L  F  R+ +       N   +  E K DG  I++ YE GK V A  RGDG  
Sbjct: 61  NTYSKEELIAFDERVQKGL---GGNPYEYFCEMKFDGVAISLVYENGKLVRAVTRGDGTR 117

Query: 160 GEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           G+DV+A +R I  IP  V    IPE  EVRGE+++   +F  +N E    G    ANPRN
Sbjct: 118 GDDVTANVRTIRNIPLYVKGDKIPERFEVRGEIFLPHREFEKINAERNENGEALMANPRN 177

Query: 219 AASGILRRLNPTDIT-RYLN-FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276
           AASG L+  + + +  R LN +F   LG+  +I      E +  +   GF V+   R+ N
Sbjct: 178 AASGTLKMQDSSVVAKRRLNCYFYQLLGE--DIGVNAHDEAISLIESWGFNVSPTYRKTN 235

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
           T   +++Y  + +  R TLP D DG+V K++++  +++LG  A++PRW I++K+  + + 
Sbjct: 236 TIEDVLTYIEDWREKRFTLPLDTDGVVLKINDYEQREELGFTAKNPRWAIAYKYKAESSE 295

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           T LL +  Q+GRTG +TPVA L PV++ G  +  A+LHN + I+ L            + 
Sbjct: 296 TELLSVTYQVGRTGAITPVANLAPVSLAGTTVKRASLHNANEIERL-----------GLH 344

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
            GD V V++ GE+IPK+  + + +R PD++P  + S CP C + + R    K G+  A H
Sbjct: 345 TGDVVFVEKGGEIIPKITGVSLEQRKPDSKPIEYISECPECGTPLER----KEGE--AKH 398

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
            C     C  Q L R++HFV + A +I+ LG +++       D  F I+ PADI+ L+ +
Sbjct: 399 FCPNASNCPPQVLGRIEHFVHKRAMDIDSLGTERIRALI---DQGF-IQNPADIYDLESK 454

Query: 517 Q 517
           Q
Sbjct: 455 Q 455



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 101/194 (52%), Gaps = 13/194 (6%)

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
           F +  ++N+ + I   +    E+ +F+LG+R++G   A  LA+++ S             
Sbjct: 608 FQEGVISNMMEGIAASKKQPFEKVLFALGVRNIGENTAALLAQHFGSIDKL--------- 658

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEI 647
            N      L+ +  VG+ + Q+I EF+    N+  +  L K          + VS  + +
Sbjct: 659 -NEASTEELLEINGVGETLVQSIHEFFSRQENLDIISRLKKSGLQFDAEQIETVSLGNAL 717

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706
           E KK++ +G L + +R +  +++   G    + +S+K D II G++ G SK EKAQ+LG+
Sbjct: 718 EGKKILASGKLNQFKRDEIVDFIKSHGGQYVSSVSKKLDFIIEGEDMGPSKKEKAQKLGI 777

Query: 707 KIMNEEQFLFLLQQ 720
            +++EE FL +L++
Sbjct: 778 PLISEEDFLKMLEE 791


>gi|68171542|ref|ZP_00544921.1| DNA ligase (NAD+) [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999047|gb|EAM85719.1| DNA ligase (NAD+) [Ehrlichia chaffeensis str. Sapulpa]
          Length = 366

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 158/382 (41%), Positives = 232/382 (60%), Gaps = 26/382 (6%)

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +A T+L  I IQIGRTG+LTP+A L P+NIGG ++T A+LHN++ I+            +
Sbjct: 3   EAKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVTRASLHNKNEIER-----------K 51

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR GD V+VKRAG+VIP++VD+  N R  +   F FP+ CP C S V +       K  
Sbjct: 52  DIREGDYVIVKRAGDVIPQIVDVDKNLRTQELTKFVFPTTCPSCGSSVYQ------AKQE 105

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
           A+  CTG L C  Q LE++KHFVS+DAFNI G GK+QL FF++       I    DIFTL
Sbjct: 106 ASIYCTGELFCKDQILEKIKHFVSKDAFNIIGFGKKQLLFFYEQR----LITNITDIFTL 161

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           + +   S  K+E++ G+G+ S++NL+ +IN  + ISLE FIF+LGIR +G  IA+ LA +
Sbjct: 162 EEKISNSDVKLESLHGWGEKSMSNLFSAINNSKVISLENFIFALGIRFIGKYIAKILANH 221

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + SY+ +  E+   +A N D  L+   +  +G     ++  F+  P N+  +  L+K ++
Sbjct: 222 FSSYETWYNEMLK-LAQNEDYSLN---IQQIGSKTIGSLKMFFSQPHNLNMINDLVKHLT 277

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
            +      +  S I  K +VFTG L  + R +A+      GA VS+ LS+ TD +I G+N
Sbjct: 278 IT-DTQSSSYLSLIHGKIIVFTGELSSMSRSEAKIRSETAGAKVSSSLSKNTDFLIAGNN 336

Query: 694 PGSKLEKAQQLGVKIMNEEQFL 715
           PGSK +KAQ L V+I+ E+ +L
Sbjct: 337 PGSKYKKAQSLNVQILTEDLWL 358


>gi|183601766|ref|ZP_02963136.1| LigA [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683704|ref|YP_002470087.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190736|ref|YP_002968130.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196142|ref|YP_002969697.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|254781258|sp|B8DU32|DNLJ_BIFA0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183219372|gb|EDT90013.1| LigA [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621354|gb|ACL29511.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249128|gb|ACS46068.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250696|gb|ACS47635.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793725|gb|ADG33260.1| LigA [Bifidobacterium animalis subsp. lactis V9]
          Length = 863

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 169/512 (33%), Positives = 272/512 (53%), Gaps = 45/512 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L++EQA +  S L   +      YY    P+  D+ YDA       +   FP L   
Sbjct: 40  VSKLNVEQAVRLWSRLSAWVEGDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQL--- 96

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P  P +++GG  +     V H    +SL+ +++ E+LR +   + +  +  +D  +  
Sbjct: 97  DTPQSPTHRVGGTFSNDFTAVRHPSQMMSLDDVFSFEELRAWYDGVRKDLEWPEDKLLPM 156

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEII 185
           T E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     +IP+++
Sbjct: 157 TCEVKIDGLALNLIYRNGVLTQGLTRGDGVTGEDITMNVRTIHSIPTNLDGPEGDIPDMV 216

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LN+     GR P+ANPRNAA+G LR+ +P     R+L+F+ HG+G
Sbjct: 217 EIRGEVFMRWDDFHKLNEANEDAGRPPFANPRNAAAGSLRQKDPRITAQRHLSFYAHGIG 276

Query: 245 KTSEIFAKG-----------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKS 290
           +   ++  G           Q +     R  G P++   R+   F  I   + YY E   
Sbjct: 277 EL--VWGSGKPVDVADEVRNQSDAYTMYRKWGVPISPHNREVTDFDQILDMIEYYGEH-- 332

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  + + +DG+V KVD+ +LQ++LG  +R+PRW I++K+  ++ +T+LL+I +Q+GRTG
Sbjct: 333 -RGDIEHALDGIVVKVDDLALQRRLGSTSRAPRWAIAYKYPPEEVNTKLLNIVVQVGRTG 391

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVA L PV + G+ ++  TLHN         + +V R G  I +GD V+V++AG+VI
Sbjct: 392 RVTPVAILNPVYVAGSTVSRTTLHN---------AYEVKRKG--ILIGDTVVVRKAGDVI 440

Query: 411 PKVVDIIVNER---HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           P++V  ++ +R     D + F  P+ CP C + V+R        L    RC    +C AQ
Sbjct: 441 PELVGPVIAKREGHEQDLREFVMPTRCPSCDT-VLRYEKEGDKDL----RCPNSESCPAQ 495

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
             ER+ +  +R AF+IE LG Q        ED
Sbjct: 496 LAERVINLAARKAFDIEHLGDQSAVALTNPED 527



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 14/185 (7%)

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           + D I K ++  L R + +L IRHVG   A +LAK++ +    A                
Sbjct: 683 MLDEIEKAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADASAE----------E 732

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLV 653
           L ++  +G  IA +I  F++  R        + E   + G     H++ +   +E K +V
Sbjct: 733 LEQIDGIGAEIADSIATFFEEARMPGNWRGRVLEAWKAAGVGMSTHDEGLPQTLEGKSVV 792

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL+   R  A+E + + G   S  +SRKTD ++VG NPGSK  KA++LG+ I++E+Q
Sbjct: 793 VTGTLEHFSRESAKEAIERRGGKASGSVSRKTDWVVVGANPGSKATKAEELGIPIIDEQQ 852

Query: 714 FLFLL 718
           F  LL
Sbjct: 853 FDTLL 857


>gi|1770452|emb|CAA66920.1| ligase-like protein [Homo sapiens]
          Length = 454

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 256/479 (53%), Gaps = 39/479 (8%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  PIE LS   A++E++ L+ +++ +   YY+   P++ D  YDAL  R  A+  AFP 
Sbjct: 4   EFTPIEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAFPQ 63

Query: 65  LARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
               + P      +GG +  S L KV H  P LSL  ++++E+L          W ++  
Sbjct: 64  FVTQDSPT---QNVGGALTKSGLAKVEHPAPMLSLGDVFSLEELAA--------WDERTT 112

Query: 124 NSIFF----TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
            S+ F     LE KIDG  + + Y  G+ V A+ RG+G  GEDV+  ++ I  IP+   L
Sbjct: 113 KSLGFQSPYNLELKIDGLAVALTYVDGRLVQASTRGNGTIGEDVTRNVKTIKAIPQ--QL 170

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLN 237
             P  IEVRGE+Y+ K  F ALN +  A G +P+ANPRNAA+G LR+L+   +T  R L+
Sbjct: 171 TEPLTIEVRGEIYMPKKSFAALNVQREADGLEPFANPRNAAAGSLRQLD-AQVTKQRELS 229

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            FV+   +   +    Q   L +   LG P +   +       I  +     + R TL Y
Sbjct: 230 AFVYYTAEPEVLGVTTQSGALARFAELGLPTDTHNQVIEKMADIADFIATYTAKRDTLAY 289

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            IDG+V KV+    Q +LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A 
Sbjct: 290 GIDGVVVKVNALDNQVELGNTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAI 349

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           ++PV + G  +  A+LHN DY++            +DIR+GD V + +AG++IP+V  +I
Sbjct: 350 MDPVQLAGTTVQRASLHNPDYLQ-----------QKDIRIGDTVTLHKAGDIIPEVGQVI 398

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +++R  D+  +  P  CP C S +V      +G++  A RC     C+AQ  E L H +
Sbjct: 399 LSQRPADSIAYPIPVACPACGSELVH----ISGEV--ALRCINPF-CAAQIQEGLTHLL 450


>gi|261337889|ref|ZP_05965773.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093]
 gi|270277364|gb|EFA23218.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093]
          Length = 906

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 171/521 (32%), Positives = 280/521 (53%), Gaps = 48/521 (9%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           K + + + AL  E+AR     +   +      YY  S PI  D+ YDA  R  +A+  A+
Sbjct: 27  KLETVDVPALGAERARTLWRKVASWVEADQVAYYIDSAPISSDAAYDARLRFLEAMERAY 86

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L   + P+ P +++GG  +     V      LSL+ +++I++LR++   +    Q  +
Sbjct: 87  PEL---DVPSSPTHRVGGSFSNEFVSVPQPSQMLSLDDVFSIQELREWYEGVRADLQWPE 143

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--- 179
              +  T E KIDG  + + Y  G       RGDG  GED++  +R I +IP  L+    
Sbjct: 144 GERLPMTCEVKIDGLALNLIYRDGVLSQGLTRGDGKIGEDITLNVRTISSIPGNLTEAGA 203

Query: 180 ---NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRY 235
              +IP ++E+RGEV++  + F ALN+     G+ P+ANPRNAA+G LR+ +P     R+
Sbjct: 204 SLGDIPHMVEIRGEVFMRWDTFHALNERNEQDGKTPFANPRNAAAGSLRQKDPRITAERH 263

Query: 236 LNFFVHGLGKTSEIFAKGQ--------------YEMLQKMRCLGFPVNNGVRQANTFHGI 281
           L+F+ HG+G     + +G+              Y++ Q+    G PV+   R   TF  I
Sbjct: 264 LSFYAHGIGTLD--WGEGKPVDAVDVVHDQSQAYDLYQRW---GIPVSPHNRMVGTFDEI 318

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
           +   +     R  + + +DG+V KVD+ +LQ++LG+ +R+PRW I++K+  ++  T+L D
Sbjct: 319 LDMIDYYGQHRDDIEHPLDGIVVKVDDLALQRRLGQTSRAPRWAIAYKYPPEEVHTKLRD 378

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           I +++GRTG +TP A L+PV + G+ ++  TLHN           +V R G  I +GD V
Sbjct: 379 IIVEVGRTGRITPAAVLDPVYVAGSTVSRTTLHN---------GYEVKRKG--ILIGDIV 427

Query: 402 LVKRAGEVIPKVVDIIVNER--HPDA-QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +V++AG+VIP++V  ++  R  H D  + F  P+ CP C + +  D+  + GK +   RC
Sbjct: 428 VVRKAGDVIPELVGPVIEARKGHEDQLREFQMPTTCPSCGATLEYDM--EGGKDL---RC 482

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
               +C AQ  ER+ +  SR AF+IE LG+Q        ED
Sbjct: 483 PNHESCPAQLTERIINMGSRKAFDIEQLGEQSAVALTNPED 523



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 112/221 (50%), Gaps = 17/221 (7%)

Query: 506 IPADIFTLQRRQQT--STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           +PAD   +  R +     T ++        +  +L + I   ++  L+R + +L IRHVG
Sbjct: 680 VPADAVIVDERTKRVRGETSVQPQYVCPSETTRSLLEEIEHAKHAELDRVLVALSIRHVG 739

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              AR +A+ + +         + + H + D   L  VP +G  +AQAI++++ +  +  
Sbjct: 740 PPTARLIAQRFGTL--------DALMHASKD--ELESVPGIGSEVAQAILDWFADADDPT 789

Query: 624 AVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           +    +     + G   K   S      +E K +V TG+LQ+  R  A+E +   G   +
Sbjct: 790 SWHGSILARWKAAGVEMKAPESSSLPKTLEGKTVVVTGSLQQFTRDSAKEAIVNRGGKAA 849

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +S+KTD +++G+  GSK +KA++LG+ +++E QF+ LL+
Sbjct: 850 GSVSKKTDYVVIGEAAGSKAKKAEELGIPMLDEAQFVHLLE 890


>gi|320094066|ref|ZP_08025884.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979007|gb|EFW10532.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 776

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/462 (34%), Positives = 250/462 (54%), Gaps = 28/462 (6%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P + D+EYD L R  + I  A P L R  D   P   +GG  + +   V H  
Sbjct: 27  AYYDRDAPTLADAEYDRLYRELEDIERAHPQL-RGAD--SPTLSVGGSADSAFAPVRHLQ 83

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
              SL+ ++++E+L  +  R++   ++  +  +  T E K+DG  + + Y  G    AA 
Sbjct: 84  QMTSLDDVFSLEELAGWEQRMH---EETGEAELPMTAEVKVDGLAVNLLYVDGALRRAAT 140

Query: 154 RGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDGH GED++A +R I +IP R+ +   P  +E+RGEVY    +F + N+  +A G + 
Sbjct: 141 RGDGHVGEDITANVRTIASIPARLDTAAPPRRVEIRGEVYFPVAEFASFNEARVAAGERA 200

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLG--KTSEIFA--KGQYEMLQKMRCLGFP 267
           + NPRNAA+G LR+ + ++   R L    HG+G  +    F     Q+   Q +R  G P
Sbjct: 201 FVNPRNAAAGSLRQKDSSETAKRPLAMVAHGVGFVEAGGAFTPPTTQHGWYQLLREWGMP 260

Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
           V+   R       I  +  E    R +L ++IDG+V K+D+ +LQ+ LG  +R+PRW  +
Sbjct: 261 VSPYTRLLTGRGAIEEFIAETGEARHSLAHEIDGVVVKIDDLALQRSLGSTSRAPRWAAA 320

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           +KF  ++  TRLLDI +Q+GRTG +TP   +E V + G+ +  ATLHN   +K       
Sbjct: 321 YKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMESVLVAGSNVARATLHNAQEVK------- 373

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
             R G  + +GD V++++AG+VIP++V  +   R+   + FS P+ CP C + +V +   
Sbjct: 374 --RKG--VLIGDLVVLRKAGDVIPEIVAPVEEARNGSEREFSMPAACPSCGTALVEE--- 426

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           K G +    RC    AC AQ  ER+ H  +R A +IEGLG +
Sbjct: 427 KEGDV--DLRCPNKAACPAQITERIAHIGARSALDIEGLGDE 466



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 20/190 (10%)

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNND 593
           +T + D + + ++  L R + +L IRHVG   AR+LA  + S     A ++  + A +  
Sbjct: 594 LTQMLDEMERAKSQPLARVLVALSIRHVGPTAARALAARFGSMDALRAADVEELAAVDG- 652

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI----EN 649
                     VG +IAQ++ ++++    +     +L+  S +  R E     E+    E 
Sbjct: 653 ----------VGGVIAQSLADWFE----VDWHREILRRWSEAGVRMEDEAPEEVPAVLEG 698

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
             +V +G +    R  A+E +T  G   S  +S+KT +++ G   GSK  KA+ LGV ++
Sbjct: 699 LTIVVSGAMPGYDREGAKEAITARGGKASGSVSKKTSLVVAGPGAGSKAAKAESLGVPVI 758

Query: 710 NEEQFLFLLQ 719
           +E QF  LL+
Sbjct: 759 SEAQFADLLE 768


>gi|289178474|gb|ADC85720.1| NAD-dependent DNA ligase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 889

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 169/512 (33%), Positives = 272/512 (53%), Gaps = 45/512 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L++EQA +  S L   +      YY    P+  D+ YDA       +   FP L   
Sbjct: 66  VSKLNVEQAVRLWSRLSAWVEGDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQL--- 122

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P  P +++GG  +     V H    +SL+ +++ E+LR +   + +  +  +D  +  
Sbjct: 123 DTPQSPTHRVGGTFSNDFTAVRHPSQMMSLDDVFSFEELRAWYDGVRKDLEWPEDKLLPM 182

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEII 185
           T E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     +IP+++
Sbjct: 183 TCEVKIDGLALNLIYRNGVLTQGLTRGDGVTGEDITMNVRTIHSIPTNLDGPEGDIPDMV 242

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LN+     GR P+ANPRNAA+G LR+ +P     R+L+F+ HG+G
Sbjct: 243 EIRGEVFMRWDDFHKLNEANEDAGRPPFANPRNAAAGSLRQKDPRITAQRHLSFYAHGIG 302

Query: 245 KTSEIFAKG-----------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKS 290
           +   ++  G           Q +     R  G P++   R+   F  I   + YY E   
Sbjct: 303 EL--VWGSGKPVDVADEVRNQSDAYTMYRKWGVPISPHNREVTDFDQILDMIEYYGEH-- 358

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  + + +DG+V KVD+ +LQ++LG  +R+PRW I++K+  ++ +T+LL+I +Q+GRTG
Sbjct: 359 -RGDIEHALDGIVVKVDDLALQRRLGSTSRAPRWAIAYKYPPEEVNTKLLNIVVQVGRTG 417

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVA L PV + G+ ++  TLHN         + +V R G  I +GD V+V++AG+VI
Sbjct: 418 RVTPVAILNPVYVAGSTVSRTTLHN---------AYEVKRKG--ILIGDTVVVRKAGDVI 466

Query: 411 PKVVDIIVNER---HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           P++V  ++ +R     D + F  P+ CP C + V+R        L    RC    +C AQ
Sbjct: 467 PELVGPVIAKREGHEQDLREFVMPTRCPSCDT-VLRYEKEGDKDL----RCPNSESCPAQ 521

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
             ER+ +  +R AF+IE LG Q        ED
Sbjct: 522 LAERVINLAARKAFDIEHLGDQSAVALTNPED 553



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 14/185 (7%)

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           + D I K ++  L R + +L IRHVG   A +LAK++ +    A                
Sbjct: 709 MLDEIEKAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADASAE----------E 758

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLV 653
           L ++  +G  IA +I  F++  R        + E   + G     H++ +   +E K +V
Sbjct: 759 LEQIDGIGAEIADSIATFFEEARMPGNWRGRVLEAWKAAGVGMSTHDEGLPQTLEGKSVV 818

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL+   R  A+E + + G   S  +SRKTD ++VG NPGSK  KA++LG+ I++E+Q
Sbjct: 819 VTGTLEHFSRESAKEAIERRGGKASGSVSRKTDWVVVGANPGSKATKAEELGIPIIDEQQ 878

Query: 714 FLFLL 718
           F  LL
Sbjct: 879 FDTLL 883


>gi|218460243|ref|ZP_03500334.1| NAD-dependent DNA ligase LigA [Rhizobium etli Kim 5]
          Length = 327

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 136/307 (44%), Positives = 202/307 (65%), Gaps = 4/307 (1%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+     +G   +++   VTH+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  DSPS---RHVGAAPSVTFSPVTHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ S
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+    Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD
Sbjct: 245 EMPEDTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304

Query: 308 EFSLQKQ 314
              LQ++
Sbjct: 305 SLELQRR 311


>gi|54024876|ref|YP_119118.1| putative DNA ligase [Nocardia farcinica IFM 10152]
 gi|81374723|sp|Q5YVN7|DNLJ1_NOCFA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|54016384|dbj|BAD57754.1| putative DNA ligase [Nocardia farcinica IFM 10152]
          Length = 663

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 218/695 (31%), Positives = 344/695 (49%), Gaps = 81/695 (11%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY+   P++ D+EYDA++    A+  A P+LA   DPN PL+++G    L    V HS 
Sbjct: 20  AYYE-GAPLVADAEYDAVEDELRALIAAHPELA--PDPN-PLDQVGAPAVLHA-PVRHSR 74

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSLEK    E +  F     RF  +         + PK+DG  + + YE G+ V A  
Sbjct: 75  PMLSLEKATTPEQVAAFF---ERFPGQP------VVVMPKLDGLSLALVYEDGRLVRAVT 125

Query: 154 RGDGHSGEDVSACIRA-IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           RGDG +G+DV+  +RA +  +P    +++P  +EVRGE  + ++ FLA N    A   KP
Sbjct: 126 RGDGTTGDDVTMLVRALVDGVPE--QIDVPGRVEVRGEAVMLRSTFLAYN---AAHPDKP 180

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
             NPRNAA+G LR  +P  +  R L FF   L  T+E  A    ++ + +R LG      
Sbjct: 181 LINPRNAAAGTLRAKDPATVAERRLRFFGFDL-DTAEGGAAA--DLGEGLRALGI-AGAA 236

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           +R         +   +++  R+ L YDIDG V ++ +       G R+ SPR  ++ KFA
Sbjct: 237 MRMCADAEQAQAAITDIERGRNDLDYDIDGAVLRLADRDAYAAAGTRSNSPRGALAFKFA 296

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++ +T L  +   +G+TG + PVARLEPV +GG  +T ATL N+  I+           
Sbjct: 297 AEEKTTVLEAVTWDVGKTGKIVPVARLEPVFVGGTTVTKATLANQQVIR----------- 345

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSFCPICQSRVVRDLNPKTG 450
            RDI+VGD VLV+RAG+VIP V  ++   +   A+     P+ CP C   V    N +  
Sbjct: 346 ARDIKVGDTVLVRRAGDVIPFVAGVLDASKRTGAEVEIVPPTECPSCGQPVTEQGNSR-- 403

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
           +L     CT   +C AQ + RL H+ SR A +I+ +G   ++   +    A  +  P+D 
Sbjct: 404 ELF----CTNA-SCPAQTVRRLIHWASRAAADIDAIGGVWIERLAE----AGILENPSDF 454

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           +TL + +     +I      G+VS T + +SI++ R++ L R +  L I       A  L
Sbjct: 455 YTLTKERLLEFDRI------GEVSATRMIESIDRSRDVGLRRALIGLAIPMASEGTAARL 508

Query: 571 AKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           A+  + S +  A                L+ V  +G  +A ++VE     R        L
Sbjct: 509 ARAGFASLEEVADAGEE----------RLVAVEDIGPKVAASLVEHLTRLRPEL---ERL 555

Query: 630 KEVSPSIGRHEKNV------SSEIENKKLVFTGTL------QKIQRHKAQEYVTQLGAVV 677
           +E   S+   E+++       + +  K +V TG +      +K+ R   Q    + GA  
Sbjct: 556 RERGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEKVARPTFQRLCEKAGATA 615

Query: 678 SAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711
           ++ +S  TD++I G   G SKL KA++LGV+I+++
Sbjct: 616 ASSVSANTDLLITGAGVGESKLAKAEKLGVEIVDQ 650


>gi|269219963|ref|ZP_06163817.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210599|gb|EEZ76939.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 799

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 164/484 (33%), Positives = 258/484 (53%), Gaps = 42/484 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+  + +   +S     Y+   +PI+ D  YD L R    +    P+LA     + P  
Sbjct: 14  ARERWNEIAPLVSSAQRAYHSGDEPIVTDEHYDRLVRELRRLEAEHPELAVD---SSPAQ 70

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
            +G         V H     SL+ ++ ++DL++        W +    +   T E KIDG
Sbjct: 71  SVGAPAAAGFENVAHLERLYSLQDVFTLDDLKE--------WYEGTAGAARCTAEVKIDG 122

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + +RY  G+ V  A RGDG +GEDV+A +R I ++P+ L  + P+++E+RGEV+I   
Sbjct: 123 LAVNLRYVGGELVVGATRGDGVTGEDVTANVRTISSVPQSLRGDFPDVVEIRGEVFIPLA 182

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-------TSE 248
            F + N    A G K +ANPRNAA+G LR+ +P     R L+F  HG G+         E
Sbjct: 183 KFDSFNARQRAAGLKEFANPRNAAAGSLRQKDPKVAAERPLDFIAHGAGRIDGTSSAVDE 242

Query: 249 IFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             A  KG YE+ Q+    G PV+  VR  +++  +  +  E   +RS L + IDG V+K+
Sbjct: 243 KLASQKGLYELFQEW---GVPVSPYVRLVSSWDDVEGFVREYADLRSDLIHGIDGAVFKI 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D  + Q+ LG  +R PRW +++K+  ++  TRLLDI +Q+GRTG +TP A ++PV + G+
Sbjct: 300 DSRAEQEDLGATSRVPRWAVAYKYPPEEVETRLLDIKVQVGRTGRVTPFAVMKPVTVAGS 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN           +V R G  + +GD V+V++AG+VIP+V+  +   R    +
Sbjct: 360 TVAQATLHN---------PSEVARKG--VLIGDVVVVRKAGDVIPEVLGPVSALRDGSER 408

Query: 427 PFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            ++ PS CP C +    +L P K G +    RC    +C AQ  ER+ +  SR A ++E 
Sbjct: 409 EWTMPSACPSCGT----ELAPAKDGDV--DIRCPNARSCPAQLAERVAYIGSRAALDVEA 462

Query: 486 LGKQ 489
           LG++
Sbjct: 463 LGEE 466



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 12/180 (6%)

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   R   L R I +L IRHVG   A+++A  +           ++ A        + ++
Sbjct: 619 LQAARTKELWRKIVALSIRHVGPTAAKAIASSF----------GSLSAAREASVEEMAQI 668

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
             VG +IAQ+ ++++  P +   VEA      V        + +   ++   +V TG L 
Sbjct: 669 DGVGRVIAQSFLDWFDVPWHTEIVEAWEAAGVVFADEAAERQELPQTLKGMTVVATGALA 728

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R   +E +   G   +  +S+KT  ++VG NPGSK  KA+ LGV  ++E QF  LL+
Sbjct: 729 GYTRDSVKEAIEARGGKAAGSVSKKTAAVVVGANPGSKAAKAEALGVPTLDEGQFEELLR 788


>gi|227546782|ref|ZP_03976831.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212744|gb|EEI80625.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 920

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 171/504 (33%), Positives = 270/504 (53%), Gaps = 49/504 (9%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L   
Sbjct: 54  VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   +  
Sbjct: 111 DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185
           + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ +
Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGLG
Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290

Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289
           +          T ++ A     Y++  K    G PV+   R   +F  I   + YY E  
Sbjct: 291 QLTWGADHPRGTHDVVADQSQAYDLYTKW---GVPVSPHNRAVTSFQEILDMIEYYGEH- 346

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRT
Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVA L+PV + G+ +   TLHN     G +    V R G  I +GD V+V++AG+V
Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDV 453

Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACS 465
           IP++V  ++     R    + F  P FCP C ++    L+P K G      RC    +C 
Sbjct: 454 IPELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LSPAKEGD--KDIRCPNVESCP 507

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQ 489
           AQ  ER+    SR AF+IE LG+Q
Sbjct: 508 AQLTERVISLASRKAFDIEHLGEQ 531



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 19/221 (8%)

Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
           +PAD   ++   +T+ T + +   I+  G+ +   ++D ++K R+  L R + +L IR +
Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   AR +A            + ++ A  N     L  +  VG  IA+++V ++   R  
Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREP 814

Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                  L    +  +G  E   SS    +  K +V TG+L+   R  A+E + + G   
Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +S+KTD +++G N GSK  KA++LG+ +++E QF  LL
Sbjct: 875 AGSVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLL 915


>gi|23464680|ref|NP_695283.1| LigA [Bifidobacterium longum NCC2705]
 gi|81754681|sp|Q8G830|DNLJ_BIFLO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23325242|gb|AAN23919.1| LigA [Bifidobacterium longum NCC2705]
          Length = 920

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 171/504 (33%), Positives = 270/504 (53%), Gaps = 49/504 (9%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L   
Sbjct: 54  VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   +  
Sbjct: 111 DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185
           + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ +
Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGLG
Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290

Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289
           +          T ++ A     Y++  K    G PV+   R   +F  I   + YY E  
Sbjct: 291 QLTWGPDHPRGTHDVVADQSQAYDLYTKW---GVPVSPHNRAVTSFQEILDMIEYYGEH- 346

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRT
Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVA L+PV + G+ +   TLHN     G +    V R G  I +GD V+V++AG+V
Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDV 453

Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACS 465
           IP++V  ++     R    + F  P FCP C ++    L+P K G      RC    +C 
Sbjct: 454 IPELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LSPAKEGD--KDIRCPNVESCP 507

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQ 489
           AQ  ER+    SR AF+IE LG+Q
Sbjct: 508 AQLTERVISLASRKAFDIEHLGEQ 531



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 19/221 (8%)

Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
           +PAD   ++   +T+ T + +   I+  G+ +   ++D ++K R+  L R + +L IR +
Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   AR +A            + ++ A  N     L  +  VG  IA+++V ++   R  
Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREP 814

Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                  L    +  +G  E   SS    +  K +V TG+L+   R  A+E + + G   
Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +S+KTD +++G N GSK  KA++LG+ +++E QF  LL
Sbjct: 875 AGSVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLL 915


>gi|256545196|ref|ZP_05472562.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170]
 gi|256399237|gb|EEU12848.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170]
          Length = 668

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 206/708 (29%), Positives = 350/708 (49%), Gaps = 80/708 (11%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGG 80
           E++YH   YY    P + D EYD L          + +L   E   G      P  ++GG
Sbjct: 18  ELNYH---YYTLDNPTVSDGEYDKL----------YDELLNLEKKTGYVNEFSPTQRVGG 64

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDN---SIFFTLEPKI 134
            +     K  H     S +K  N   L+ +I R  +    + K  ++    + F  E K 
Sbjct: 65  AILDKFEKHFHITRLYSQDKSQNYTQLKDWIIRTKKLRDQYNKTHEDKLEELEFITEYKF 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + YE G    AA RGDG SGEDV+  +  IPTIP    +    ++E++GE  + 
Sbjct: 125 DGLTINLTYEDGLLKTAATRGDGISGEDVTKQVLTIPTIPT--KIKEKSLLEIQGEAVMP 182

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
            +     N+E       P  N RNAA+G +R L+ +    R L  + + +  T+ +  K 
Sbjct: 183 LSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTKKRNLKAYFYQIS-TNNLDFKT 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           + E L+ ++    PV    +    F  IV   + +K  R  +    DG+V KV++   Q+
Sbjct: 238 EEEKLEFLKEQKLPVYPYKKVIKKFDDIVKEIDFIKEERHHIDVLTDGVVIKVNDVKTQE 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   + PRW I++K+  ++ +T LLD+   +GR+G +TP+A LEPV+  G  +  ATL
Sbjct: 298 VLGYTNKFPRWSIAYKYDPEEYTTTLLDVVWNVGRSGKVTPLAILEPVDFSGVTVQRATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           +N D          ++R  + +++G +V ++R+ +VIP+++  +V+E   + +    P  
Sbjct: 358 NNYD---------DILR--KKVKIGSKVFIRRSNDVIPEILG-VVDENQENTKEIEKPDK 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           CP C S ++             H  C   ++C+ Q   R+ HF SRDA +IEGL ++ ++
Sbjct: 406 CPYCHSELIEG---------NVHIYCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTIE 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         I+   D++ L      S   + N+  F +    NL ++I   ++  L  
Sbjct: 457 LFINK----LGIKEIYDLYDL------SYDDLINLESFKEKKTNNLLNAIENSKSCELNH 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI ++GI +VG + AR LA+ Y S+    +          DD   LI +  +G+  A+ I
Sbjct: 507 FIHAIGIPNVGIKTARDLAEKYKSFDKLRE-------TKQDD---LIEIEDIGEKTAEDI 556

Query: 613 VEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           V+F+ +     +++ LL +     +I   EK  S+ ++  K+V TGT++  +R+  +  +
Sbjct: 557 VDFFNDSNIKKSLDILLSKGIKIKAIDTSEK--SNSLDGMKIVITGTIENYKRNDIKNLI 614

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFL 717
            +    V++ +S+ TD+++ G+ PGSK EKA++LGVKI+ N+E F FL
Sbjct: 615 IENNGDVTSSVSKNTDLVLCGEKPGSKKEKAEKLGVKILENQELFEFL 662


>gi|317481657|ref|ZP_07940691.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916889|gb|EFV38277.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 920

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 171/504 (33%), Positives = 270/504 (53%), Gaps = 49/504 (9%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L   
Sbjct: 54  VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   +  
Sbjct: 111 DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEII 185
           + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ +
Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLVGPKEDVPDFV 230

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGLG
Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290

Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289
           +          T ++ A     Y++  K    G PV+   R   +F  I   + YY E  
Sbjct: 291 QLTWGPDHPRGTHDVVADQSQAYDLYTKW---GVPVSPHNRAVTSFQEILDMIEYYGEH- 346

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRT
Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVA L+PV + G+ +   TLHN     G +    V R G  I +GD V+V++AG+V
Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDV 453

Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACS 465
           IP++V  ++     R    + F  P FCP C ++    L+P K G      RC    +C 
Sbjct: 454 IPELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LSPAKEGD--KDIRCPNVESCP 507

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQ 489
           AQ  ER+    SR AF+IE LG+Q
Sbjct: 508 AQLTERVISLASRKAFDIEHLGEQ 531



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 19/221 (8%)

Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
           +PAD   ++   +T+ T + +   I+  G+ +   ++D ++K R+  L R + +L IR +
Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   AR +A            + ++ A  N     L  +  VG  IA+++V ++   R  
Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREP 814

Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                  L    +  +G  E   SS    +  K +V TG+L+   R  A+E + + G   
Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +S+KTD +++G N GSK  KA++LG+ +++E QF  LL
Sbjct: 875 AGSVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLL 915


>gi|239620760|ref|ZP_04663791.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|312132368|ref|YP_003999707.1| lig [Bifidobacterium longum subsp. longum BBMN68]
 gi|239516336|gb|EEQ56203.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|311772424|gb|ADQ01912.1| Lig [Bifidobacterium longum subsp. longum BBMN68]
          Length = 920

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 171/504 (33%), Positives = 270/504 (53%), Gaps = 49/504 (9%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L   
Sbjct: 54  VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   +  
Sbjct: 111 DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185
           + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ +
Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGLG
Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290

Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289
           +          T ++ A     Y++  K    G PV+   R   +F  I   + YY E  
Sbjct: 291 QLTWGPDHPRGTHDVVADQSQAYDLYTKW---GVPVSPHNRAVTSFQEILDMIEYYGEH- 346

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRT
Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVA L+PV + G+ +   TLHN     G +    V R G  I +GD V+V++AG+V
Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDV 453

Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACS 465
           IP++V  ++     R    + F  P FCP C ++    L+P K G      RC    +C 
Sbjct: 454 IPELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LSPAKEGD--KDIRCPNVESCP 507

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQ 489
           AQ  ER+    SR AF+IE LG+Q
Sbjct: 508 AQLTERVISLASRKAFDIEHLGEQ 531



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 19/221 (8%)

Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
           +PAD   ++   +T+ T + +   I+  G+ +   ++D ++K R+  L R + +L IR +
Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   AR +A            + ++ A  N     L  +  VG  IA+++V ++   R  
Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREP 814

Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                  L    +  +G  E   SS    +  K +V TG+L+   R  A+E + + G   
Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +S+KTD +++G N GSK  KA++LG+ +++E QF  LL
Sbjct: 875 AGSVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLL 915


>gi|322689624|ref|YP_004209358.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691585|ref|YP_004221155.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291516189|emb|CBK69805.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum F8]
 gi|320456441|dbj|BAJ67063.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460960|dbj|BAJ71580.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F]
          Length = 920

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 171/504 (33%), Positives = 270/504 (53%), Gaps = 49/504 (9%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L   
Sbjct: 54  VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   +  
Sbjct: 111 DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185
           + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ +
Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGLG
Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290

Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289
           +          T ++ A     Y++  K    G PV+   R   +F  I   + YY E  
Sbjct: 291 QLTWGPDHPRGTHDVVADQSQAYDLYTKW---GVPVSPHNRAVTSFQEILDMIEYYGEH- 346

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRT
Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVA L+PV + G+ +   TLHN     G +    V R G  I +GD V+V++AG+V
Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDV 453

Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACS 465
           IP++V  ++     R    + F  P FCP C ++    L+P K G      RC    +C 
Sbjct: 454 IPELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LSPAKEGD--KDIRCPNVESCP 507

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQ 489
           AQ  ER+    SR AF+IE LG+Q
Sbjct: 508 AQLTERVISLASRKAFDIEHLGEQ 531



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 19/221 (8%)

Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
           +PAD   ++   +T+ T + +   I+  G+ +   ++D ++K R+  L R + +L IR +
Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   AR +A            + ++ A  N     L  +  VG  IA+++V ++   R  
Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREP 814

Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                  L    +  +G  E   SS    +  K +V TG+L+   R  A+E + + G   
Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +S+KTD +++G N GSK  KA++LG+ +++E QF  LL
Sbjct: 875 AGSVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLL 915


>gi|291456400|ref|ZP_06595790.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213]
 gi|291381677|gb|EFE89195.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213]
          Length = 930

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 171/503 (33%), Positives = 267/503 (53%), Gaps = 47/503 (9%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+ E A +  + +   +      YY    P+  D+ YDA  R    +  AFP L   
Sbjct: 54  VNTLNAEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQKLEAAFPSL--- 110

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     D   +  
Sbjct: 111 DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPDGKPLPM 170

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185
           + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     +IP+ +
Sbjct: 171 SCEVKIDGLALNLIYRGGVLEQGLTRGDGVTGEDITLNVRTIGSIPAQLGGPKEDIPDFV 230

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LN+E    GR  +ANPRNAA+G LR+ +P    TR L+F+ HGLG
Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRALFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290

Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289
           +          T ++ A     Y++  K    G PV+   R   +FH I   + YY E  
Sbjct: 291 QLTWGPDHPRGTHDVIADQSQAYDLYAKW---GVPVSPHNRSVTSFHEILDMIDYYGEH- 346

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRT
Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVA L+PV + G+ +   TLHN           +V R G  I +GD V+V++AG+V
Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN---------GFEVKRKG--ILIGDTVVVRKAGDV 453

Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466
           IP++V  ++     R  + + F  P FCP C +++      K G      RC    +C A
Sbjct: 454 IPELVGPVLERRKGRESELREFVMPEFCPSCGAKLA---PAKEGD--KDIRCPNVESCPA 508

Query: 467 QQLERLKHFVSRDAFNIEGLGKQ 489
           Q  ER+    SR AF+IE LG+Q
Sbjct: 509 QLTERVISLASRKAFDIEHLGEQ 531



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 21/234 (8%)

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISL 550
           F  S  P + +  PAD   ++   +T+ T + ++  +   G+ +   ++D ++K R+  L
Sbjct: 706 FVASRYPEYDV--PADAVIVRVDHKTTRTGVTDVPVYIRPGE-NTRKMFDEMDKARHADL 762

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IR +G   AR +A            + ++ A  N     L  +  VG  IA+
Sbjct: 763 WRVLVALSIRRLGPPTARLIAS----------AMGSLGAIENATVEDLTAIDGVGPEIAE 812

Query: 611 AIVEFYQNPRNICAV--EALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHK 665
           ++V ++   R       E L    +  +G      S+    +  K +V TG+L+   R  
Sbjct: 813 SVVNWFAAAREPGDWRGETLRAWQAAGVGVDVAETSTLPQTLAGKTVVVTGSLEGYSRDS 872

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E + + G   +  +S+KTD ++VG+N GSK  KA++LG+ ++NE QF  LL+
Sbjct: 873 AKEAIIERGGKAAGSVSKKTDYVVVGENAGSKAAKAEELGIPMLNEAQFAQLLE 926


>gi|82548271|gb|ABB82962.1| NAD-dependent DNA ligase [uncultured organism HF70_19B12]
          Length = 707

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 221/746 (29%), Positives = 356/746 (47%), Gaps = 123/746 (16%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKI 78
           E   L  EI  H + YY Y++P I D+++D L +R   I           DP+ P L K+
Sbjct: 10  EADRLASEIQRHSELYYNYAEPEITDAQFDLLIQRLREI-----------DPSNPQLEKV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      KV H  P LSL+K    +++  F+       Q+       F ++PK+DG+ 
Sbjct: 59  GADPAPGSVKVEHIYPMLSLDKANTPQEIAHFVNITSAATQR-------FVVQPKLDGSA 111

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ Y +G  V A  RG G  GEDV+  +R IP        NIP  I+ RG  ++ + + 
Sbjct: 112 ISLEYRRGMLVRAVTRGSGTRGEDVTRNVRRIP--------NIPNRIKWRGNCFV-RGEV 162

Query: 199 LALNDEMIAVGRKPYA----NPRNAASGILRRLNPTD---ITRYLNFFVHGL----GKTS 247
           + L D      R+ YA    NPRN A+G LR+ NP         L FF + +    G + 
Sbjct: 163 VMLLDTY----RENYAEVAPNPRNLAAGALRQKNPESGKARAEDLRFFAYDVKFPEGASG 218

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTF-----------HGIVSYYNEMKSIRSTLP 296
           E  +K     +   + L +     ++ A  F             ++S   E    R  +P
Sbjct: 219 E-ESKAPLNYIHDSQILEWLFTMDIQPAGRFVVEADDSDEVIELLISKTEEAIGSREEMP 277

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           ++IDGLV KVDE + +  LGE A  PRW ++ KF  ++A+T ++ +D Q GRTG +TPVA
Sbjct: 278 WEIDGLVIKVDELTKRPLLGETAHHPRWALAWKFPPEEATTVVMSVDWQTGRTGNVTPVA 337

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           R+ PV + G  + N TLHN          G+V R G  +++GDRV++ R G+VIPK+  +
Sbjct: 338 RVAPVMVSGVTVENTTLHN---------PGEVERLG--LKIGDRVMIVRRGDVIPKITKV 386

Query: 417 I--------VNERHPDAQPF----------SFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           I           RH D  PF            PS CP C +    +L+ +   L    +C
Sbjct: 387 IGQATGTDLEGRRHSDGTPFHEALPERIDVEPPSVCPRCGT----NLHSEGAFL----KC 438

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS---EDPAFSIRIP-ADIFTLQ 514
                C ++ +  + ++    +  I+G+G++  +   +S    + A   R+  AD+ +L+
Sbjct: 439 RNS-GCPSRVVRSILYWCK--SLEIDGVGEKLANQLVESGLAPELADLYRLSHADVLSLE 495

Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
           R               G+ S   + D I  +R +SL+ FI SLG+  +G EIA  ++K  
Sbjct: 496 R--------------MGEKSARRVIDQIQSKRKMSLDHFIASLGLPRIGPEIASMISKEI 541

Query: 575 LSYQNFAQEINNIIA---HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL--L 629
            + +NF   +N   +      D    L+ +  +G+I+A+  ++  ++  N   +E L  L
Sbjct: 542 KTIENFRNLVNTWSSGREETTDILPRLVAIDGIGEIVARLFLDGSKS--NWSQIEDLSSL 599

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
            E++P   + E      +    L  TG++ + ++       +  G VVS++ SR  D +I
Sbjct: 600 LEITPM--QTENRSIGPLAGLTLCITGSMTRPRKEVELLIRSAGGKVVSSVSSR-LDYLI 656

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFL 715
            GD  GSKLEKA +L V ++NEEQ +
Sbjct: 657 AGDAAGSKLEKATRLQVSVLNEEQLM 682


>gi|225352232|ref|ZP_03743255.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157479|gb|EEG70818.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 909

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 172/499 (34%), Positives = 266/499 (53%), Gaps = 40/499 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + ++S E A +  + +   +      YY    P+  D+ YDA  R   A+   FP L  +
Sbjct: 83  VSSISAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARIRCLQALEAQFPSLDSA 142

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P    +++GG  +     V H    +SL+ ++++E+L ++   + R     +   +  
Sbjct: 143 QSPT---HRVGGTFSNDFASVRHPSRMMSLDDVFSLEELHEWYDGVIRGLDWPETKPLPM 199

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185
           T E KIDG  + + Y  G       RGDG  GED++  +R I TIP+ L+    +IPE +
Sbjct: 200 TCEVKIDGLALNLIYRNGVLEQGLTRGDGVIGEDITLNVRTISTIPQNLAGPEEDIPEFV 259

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG+G
Sbjct: 260 EIRGEVFMRWDDFNTLNKENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 319

Query: 245 KTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRS 293
                  +G        Q E     +  G PV+   R+  TF  I   + YY E    R 
Sbjct: 320 TLQWGAKRGADHDAVNNQSEAYGLYKKWGIPVSPHNREVTTFSQILDMIDYYGEH---RG 376

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +T
Sbjct: 377 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 436

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN           +V R G  + +GD V+V++AG+VIP++
Sbjct: 437 PVAILKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVIPEL 485

Query: 414 VDIIVNER--HPDA-QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  ++  R  H D  + F  PS CP C +++      K G      RC    +C AQ  E
Sbjct: 486 VGPVLERREGHEDQLRRFVMPSQCPSCGAQLA---PAKEGD--KDIRCPNVESCPAQLTE 540

Query: 471 RLKHFVSRDAFNIEGLGKQ 489
           R+ +  SR AF+IE LG Q
Sbjct: 541 RIINLASRKAFDIEHLGDQ 559



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 15/187 (8%)

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           + D I+K R+  L R + +L IR +G   AR +A  + S         + I   + D LS
Sbjct: 729 MLDEIDKARHADLWRVLVALSIRRLGPPTARVIANTFGSL--------DAIERASVDELS 780

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSS---EIENKKL 652
             ++  +G  IA+++V ++ + +        + E   +  +G  +  +S+    +E K +
Sbjct: 781 --QIDGIGPEIAESVVTWFASAKEPGDWRGTVLEAWKAAGVGAEQVEISTLPQTLEGKTV 838

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L    R  A+E +   G   S  +S+KTD +++G+N G+K  KA++LGV ++NE+
Sbjct: 839 VVTGSLIDFSRDSAKEAIISRGGRASGSVSKKTDWVVIGENAGAKAAKAEELGVPMLNED 898

Query: 713 QFLFLLQ 719
           QF  LL+
Sbjct: 899 QFKILLE 905


>gi|23336066|ref|ZP_00121295.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Bifidobacterium longum DJO10A]
 gi|189438929|ref|YP_001954010.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A]
 gi|254781259|sp|B3DPR8|DNLJ_BIFLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189427364|gb|ACD97512.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A]
          Length = 920

 Score =  274 bits (700), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 171/504 (33%), Positives = 270/504 (53%), Gaps = 49/504 (9%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L   
Sbjct: 54  VNMMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   +  
Sbjct: 111 DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185
           + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ +
Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGLG
Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290

Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289
           +          T ++ A     Y++  K    G PV+   R   +F  I   + YY E  
Sbjct: 291 QLTWGPDHPRGTHDVVADQSQAYDLYTKW---GVPVSPHNRAVTSFQEILDMIEYYGEH- 346

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRT
Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVA L+PV + G+ +   TLHN     G +    V R G  I +GD V+V++AG+V
Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDV 453

Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACS 465
           IP++V  ++     R    + F  P FCP C ++    L+P K G      RC    +C 
Sbjct: 454 IPELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LSPAKEGD--KDIRCPNVESCP 507

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQ 489
           AQ  ER+    SR AF+IE LG+Q
Sbjct: 508 AQLTERVISLASRKAFDIEHLGEQ 531



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 19/221 (8%)

Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
           +PAD   ++   +T+ T + +   I+  G+ +   ++D ++K R+  L R + +L IR +
Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   AR +A            + ++ A  N     L  +  VG  IA+++V ++   R  
Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREP 814

Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                  L    +  +G  E   SS    +  K +V TG+L+   R  A+E + + G   
Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +S+KTD +++G N GSK  KA++LG+ +++E QF  LL
Sbjct: 875 AGSVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLL 915


>gi|296454555|ref|YP_003661698.1| DNA ligase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183986|gb|ADH00868.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 920

 Score =  273 bits (699), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 168/501 (33%), Positives = 266/501 (53%), Gaps = 43/501 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L   
Sbjct: 54  VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   +  
Sbjct: 111 DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185
           + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ +
Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGLG
Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290

Query: 245 K----------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSI 291
           +          T ++ A  Q +        G PV+   R   +F  I   + YY E    
Sbjct: 291 QLTWGPDHPRGTHDVVAD-QSQAYDLYTRWGVPVSPHNRAVTSFQEILDMIEYYGEH--- 346

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R  + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG 
Sbjct: 347 RGDIEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGR 406

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVA L+PV + G+ +   TLHN     G +    V R G  I +GD V+V++AG+VIP
Sbjct: 407 VTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDVIP 455

Query: 412 KVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           ++V  ++     R    + F  P FCP C +++      K G      RC    +C AQ 
Sbjct: 456 ELVGPVLERRKGREGQLREFVMPEFCPSCGAKLA---PAKEGD--KDIRCPNVESCPAQL 510

Query: 469 LERLKHFVSRDAFNIEGLGKQ 489
            ER+    SR AF+IE LG+Q
Sbjct: 511 TERVISLASRKAFDIEHLGEQ 531



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 19/221 (8%)

Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
           +PAD   ++   +T+ T + +   I+  G+ +   ++D ++K R+  L R + +L IR +
Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   AR +A            + ++ A  N     L  +  VG  IA+++V ++   R  
Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAAAREP 814

Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                  L    +  +G  E   SS    +  K +V TG+L+   R  A+E + + G   
Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +S+KTD +++G N GSK  KA++LG+ ++ E QF  LL
Sbjct: 875 AGSVSKKTDYVVIGANAGSKATKAEELGIPMLGEAQFAQLL 915


>gi|213691626|ref|YP_002322212.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254781260|sp|B7GPV4|DNLJ_BIFLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|213523087|gb|ACJ51834.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457713|dbj|BAJ68334.1| DNA ligase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 921

 Score =  273 bits (699), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 169/502 (33%), Positives = 267/502 (53%), Gaps = 45/502 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L   
Sbjct: 54  VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   +  
Sbjct: 111 DNPQSPTHRVGGSFSNDFVSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185
           + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ +
Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGLG
Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290

Query: 245 K----------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSI 291
           +          T ++ A  Q +        G PV+   R   +F  I   + YY E    
Sbjct: 291 QLTWGADHPRGTHDVVAD-QSQAYDLYTRWGVPVSPHNRAVTSFQEILDMIEYYGEH--- 346

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R  + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG 
Sbjct: 347 RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGR 406

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVA L+PV + G+ +   TLHN     G +    V R G  + +GD V+V++AG+VIP
Sbjct: 407 VTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--VLIGDTVVVRKAGDVIP 455

Query: 412 KVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQ 467
           ++V  ++     R    + F  P FCP C ++    L P K G      RC    +C AQ
Sbjct: 456 ELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LAPAKEGD--KDIRCPNVESCPAQ 509

Query: 468 QLERLKHFVSRDAFNIEGLGKQ 489
             ER+    SR AF+IE LG+Q
Sbjct: 510 LTERVISLASRKAFDIEHLGEQ 531



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 21/223 (9%)

Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
           +PAD   ++   +T+ T + +   I+  G+ +   ++D ++K R+  L R + +L IR +
Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764

Query: 563 GAEIARSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           G   AR +A    S     +  I ++ A +            VG  IA+++V ++   R 
Sbjct: 765 GPPTARLIASAMGSLAAIEKATIEDLTAIDG-----------VGPEIAESVVNWFAATRE 813

Query: 622 ICAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                   L    +  +G  E   SS    +  K +V TG+L+   R  A+E + + G  
Sbjct: 814 PGDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGK 873

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  +S+KTD +++G N GSK  KA++LG+ ++ E QF  LL+
Sbjct: 874 AAGSVSKKTDYVVIGANAGSKAIKAEELGIPMLGEIQFAQLLE 916


>gi|297196946|ref|ZP_06914343.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
 gi|297146537|gb|EDY59948.2| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
          Length = 712

 Score =  273 bits (698), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 202/713 (28%), Positives = 329/713 (46%), Gaps = 68/713 (9%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY+     + D  YD L R   A     PD      PN P  K+ G     +  V H++
Sbjct: 45  AYYEGGTSALDDDAYDRLVRGIAAWETDHPDQVL---PNSPTGKVAG--GAVVGDVPHTV 99

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             LSL+ +++ ED   +   + R   +       F++EPK+DG  I  RY +G+      
Sbjct: 100 AMLSLDNVFSPEDFTAWTVSLAR---RIGHEVRRFSVEPKLDGLAIAARYTQGRLARLIT 156

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG +GEDVS  I  +  +P    L+ P  +EVRGEV ++   F   N+   A G +P+
Sbjct: 157 RGDGIAGEDVSHAIGTLEGLPE--KLDQPVTVEVRGEVLMTTAQFEHANEVRTAHGGQPF 214

Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGL--------GKTSEIFAKGQYEMLQKMRCLG 265
           AN R A++G LR  +    T  + FF + L          T  +      +++     +G
Sbjct: 215 ANARGASAGTLRAKDRA-YTVPMTFFGYSLLSLPDADSALTERLNGLAHSDLMDLTAQMG 273

Query: 266 FPVNNGVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
                        A T   ++    E+ ++R+ LP+ IDG+V K D  + Q+  G  +R+
Sbjct: 274 VNTTATTAAPGIIATTVEEVLDRVREIAALRAELPFGIDGIVIKADLAADQQAAGSGSRA 333

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++K    +  TRLLD++  +GRTGI+ P   LEPV I GA IT ATLHN   I  
Sbjct: 334 PRWAIAYKLPAVEKITRLLDVEWNVGRTGIVAPRGVLEPVEIDGATITYATLHNPADIA- 392

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      R +R+GD V+V RAG+VIP++   + + R  D QP +FP  CP C S +
Sbjct: 393 ----------RRGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGDEQPIAFPEVCPRCGSAI 442

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
             D + +        RC  G  C    +  L +   RD  +IEGLG  ++    +    A
Sbjct: 443 --DTSQER------WRCEQGRNC--HLVASLSYAAGRDQLDIEGLGVTRIVQLVE----A 488

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +   AD+FTL R Q  +  ++      G  S  NL  +I   +   L R + +LG+R 
Sbjct: 489 GLVTDLADLFTLTRDQLLALERM------GATSTDNLLTAIAAAKGQPLSRVLCALGVRG 542

Query: 562 VGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIR-----VPLVGDIIAQAI 612
            G  ++R +A+++ +        A  +  +     +   S++       PL+  +IA  +
Sbjct: 543 TGRSMSRRIARHFATMDTIRAADADAMQQVEGIGTEKAPSIVAELAELAPLIDKLIAAGV 602

Query: 613 --VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
              E    P             + + G     ++  +       TG L+K+ R++  E +
Sbjct: 603 NMTEPGVTPPPAAGDTDAAAGGTKAAGGPLAGMTVVVTG---AMTGALEKLSRNQMNELI 659

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            + G   S+ +S+KT +++ G+  GSK  KA+ LG+++   ++F  L+  + +
Sbjct: 660 ERAGGRSSSNVSKKTTLVVAGEGAGSKRAKAEDLGIRLATPDEFAALVADFTS 712


>gi|302526819|ref|ZP_07279161.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
 gi|302435714|gb|EFL07530.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
          Length = 663

 Score =  273 bits (697), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 215/715 (30%), Positives = 348/715 (48%), Gaps = 89/715 (12%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+ +  L  +I    D YY+ S P + D+EYDA++     +  A P+LA   DPN PL++
Sbjct: 4   RERIQELADQIVALRDAYYRGS-PAVADAEYDAIEDELRGLIEASPELA--PDPN-PLDQ 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG   L    + HS P LSLEK    E +  F  R                + PK+DG 
Sbjct: 60  VGGPAVLHA-PIRHSRPMLSLEKATKPEQVEAFFDRF---------PGQAVVVMPKLDGL 109

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT-IPRVLSLNIPEIIEVRGEVYISKN 196
            + + YE G+   A  RGDG +G+DV+  +RA+   +P  +S   P  +EVRGE  + ++
Sbjct: 110 SLALVYEDGRLARAVTRGDGTTGDDVTMLVRALTDGVPHQVS--APGRVEVRGEAVMLRS 167

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A N    A   KP  NPRNAA+G LR  +P  +  R L FF   L          + 
Sbjct: 168 TFAAYN---TAHPDKPLINPRNAAAGTLRAKDPAAVAERRLRFFAFDLDTEP---GSAET 221

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++   +  LGF   +  R A+      +    ++  R+ L YDIDG V ++ + +     
Sbjct: 222 DLGSGLLALGFTAADMRRCADAASA-QAVITAIEQQRNDLDYDIDGAVLRLADRAAYAAA 280

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G R+ SPR  +++KFA ++ +T L D+   +G+TG + PVA LEPV +GG  +T ATL N
Sbjct: 281 GTRSSSPRGALAYKFAAEEKTTVLSDVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLAN 340

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSFC 434
           ++ I+            R I++GD VLV+RAG+VIP V  ++   +   A+     PS C
Sbjct: 341 QEVIR-----------ARGIKIGDTVLVRRAGDVIPFVAGVLDESKRTGAEREIVPPSTC 389

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C+  +    N +  +L     CT  ++C AQ + RL H+ SR A +I+ +G   ++  
Sbjct: 390 PSCEQPLTEQGNSR--ELF----CT-NVSCPAQTVRRLIHWASRAAADIDAIGGVWIERL 442

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLE 551
            +    A  +  P+D + L +         E +L F   G+VS T + +SI+  R + L 
Sbjct: 443 AE----AGILEHPSDFYRLTK---------ERLLEFDRIGEVSATRMIESIDASRQVGLR 489

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  L I      +A       L    FA  +  ++    D    L+ V  +G  +A +
Sbjct: 490 RALIGLAI-----PMASEGTAARLCRAGFAS-LEAVLDAGVD---GLVEVEDIGPKVAAS 540

Query: 612 IVEFYQNPR--------NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL----- 658
           +VE     R           +++ L +++ P++        + +E K +V TG +     
Sbjct: 541 LVEHLTRLRPELERLRERGVSLDVLEEDLPPAV-----VAGAPLEGKTVVVTGAISDPRS 595

Query: 659 -QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711
            +K+ R   Q      GA  ++ +S  TD++I G + G SKL KA++LGV+++++
Sbjct: 596 GEKVPRPTFQRLCETAGATTASSVSASTDLLITGADVGASKLTKAEKLGVEVVDQ 650


>gi|225013055|ref|ZP_03703470.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A]
 gi|225002783|gb|EEG40764.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A]
          Length = 487

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 168/523 (32%), Positives = 271/523 (51%), Gaps = 41/523 (7%)

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N++   +G   Y NPRN ASG L+  + + +  R L  F++ L   + +    QY+ L 
Sbjct: 1   MNEQRAILGEPLYRNPRNTASGSLKLQDSSIVAERPLTCFLYSLAGDN-LPVTSQYDALI 59

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           K R  GF V    R  N+   +  +    +  R +LPY+IDG+V KV+   LQ++LG  A
Sbjct: 60  KAREWGFKVPESARLVNSIDAVFEFITYWEEQRKSLPYEIDGIVIKVNSLFLQEELGFTA 119

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++PRW I++K+  +QASTRL  +  Q+GRTG +TPVA+LEPV I G  +  A+LHN D I
Sbjct: 120 KAPRWAIAYKYKAEQASTRLNAVQYQVGRTGAITPVAQLEPVVISGTTVKRASLHNADQI 179

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           + L           D+R+GD V V++ GE+IPK+  I  + R        F   CP C S
Sbjct: 180 EKL-----------DMRIGDTVFVEKGGEIIPKITGIDNHNRGKHEDRVLFIENCPECNS 228

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            + R          A H C+  L+C  QQ+ +++HF+ R A +IEGLG + +   +K   
Sbjct: 229 PLRRVQGE------AQHYCSNELSCPPQQIGKIQHFIGRKAMDIEGLGGETVGLLYKEG- 281

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +R  AD++ L++ Q     ++       + SV NL + I K +     + +F LGI
Sbjct: 282 ---LLRSIADLYQLKKEQVLPIERM------AEKSVANLLEGIEKSKEKPFSKVLFGLGI 332

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           R+VG  +A+ LA+ + S    A      + +  +          +GD IAQ++++++ + 
Sbjct: 333 RYVGETVAKQLAREFKSIDRLALATLEELTNTEE----------IGDRIAQSVLDYFAST 382

Query: 620 RNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           +N   + AL    +       E N   +   KK V +G  +   R   +  +  +G  V+
Sbjct: 383 KNQSQISALKNFGLQMQALESEHNFHDDFVGKKFVVSGVFEAFSREVLKSEIENMGGKVA 442

Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +S KTD +I G+  G SK EKA + GV I++E+ +L L Q+
Sbjct: 443 SSVSAKTDYLISGEGVGPSKKEKADKFGVTILDEKSYLALKQK 485


>gi|24216818|ref|NP_714299.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str.
           56601]
 gi|81465271|sp|Q8EYU4|DNLJ_LEPIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24198185|gb|AAN51317.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 681

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 209/728 (28%), Positives = 343/728 (47%), Gaps = 66/728 (9%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++    + LS ++A+  ++ L  EI +H   YY  + P I D ++D L RR   +  
Sbjct: 1   MPKKKEDSQKTLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP     +D   P   +G +++    K  H +P LSL   +N  +L +        W  
Sbjct: 61  EFPQF---KDLASPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDNELLE--------WVN 109

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K D    +++E KIDG  I + YE G       RG G  G+DV+  IR I  IP  L L 
Sbjct: 110 KTDPEGLYSVEWKIDGASIVLYYENGILKNGVTRGSGGIGDDVTDNIRTIRNIP--LRLP 167

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            P  + +RGEV+++  DF   N    A+    YANPRN ++G +++ N +D   R L  F
Sbjct: 168 KPITVYLRGEVFMTFKDFEEFN----ALSSGKYANPRNLSAGSIKQKNSSDTAKRPLRIF 223

Query: 240 VH-GLGKTSEIFAKGQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLP 296
            +       E   K   E+  K+  L FPV  N      +    I     E K  + +L 
Sbjct: 224 TYDATFPNMEKKFKTHQEIFSKLEKLTFPVPPNTAFVSGSK---IAKTIQEFKKQKDSLG 280

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           +  DGLV K+++ S +  LG  + SPRW  ++KF      ++++DI   +GRTG +TP A
Sbjct: 281 FPTDGLVIKLNDISKRDALGYTSHSPRWARAYKFDAIMKESKIVDITYAVGRTGKITPRA 340

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            +EP+++ G  +T ATLHN+DYI  L            + +G  V V + GE+IP V ++
Sbjct: 341 EIEPISLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEV 389

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +     P  + F  P  CP C ++ ++       K            C  +    +  + 
Sbjct: 390 VT----PGKEVFKIPDRCPSCNTQTIK-------KESLVDLFCPNPDCPDRVKNGIIFYC 438

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
            R   +IEGLG +Q++F +  +     I+  AD++ L+ +++    K+    GFG+ SV 
Sbjct: 439 QRKQMDIEGLGDKQIEFLYDHD----YIKSIADLYDLKDQKE----KLMEEEGFGEKSVN 490

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--IAHNNDD 594
            +   I + +       + SLG+  +G ++   L ++ +        I+ I  IA +   
Sbjct: 491 IILKGIEQSKQKDFRFLLPSLGLSELGHKVTELLIEHGID------SIDEILSIAKDQKK 544

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKL 652
             SL+ +P +G    QA  E + + R +  +E  LK+    +      V+ +     +  
Sbjct: 545 IESLLEIPGIGPSTIQAFQENFSDKRILKLIER-LKKAGLKMKADPIQVADQQPFAGQSW 603

Query: 653 VFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
             TG+ +  Q R KA + +   G    + +S KT  ++ G   GSKLEKA +LGV + +E
Sbjct: 604 CVTGSFENFQPRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGVSVYDE 663

Query: 712 EQFLFLLQ 719
           +QFL LL+
Sbjct: 664 KQFLDLLK 671


>gi|45659103|ref|YP_003189.1| NAD dependent DNA ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|81406496|sp|Q72MA6|DNLJ_LEPIC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|45602349|gb|AAS71826.1| NAD dependent DNA ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 681

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 211/730 (28%), Positives = 344/730 (47%), Gaps = 70/730 (9%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++    + LS ++A+  ++ L  EI +H   YY  + P I D ++D L RR   +  
Sbjct: 1   MPKKKEDSQKTLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP     +D   P   +G +++    K  H +P LSL   +N  +L +        W  
Sbjct: 61  EFPQF---KDLASPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDNELLE--------WVN 109

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K D    +++E KIDG  I + YE G       RG G  G+DV+  IR I  IP    L 
Sbjct: 110 KTDPEGLYSVEWKIDGASIVLYYENGILKNGVTRGSGGIGDDVTDNIRTIRNIP----LR 165

Query: 181 IPEIIEV--RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237
           +PE I V  RGEV+++  DF   N    A+    YANPRN ++G +++ N +D   R L 
Sbjct: 166 LPEPITVYLRGEVFMTFKDFEEFN----ALSSGKYANPRNLSAGSIKQKNSSDTAKRPLR 221

Query: 238 FFVH-GLGKTSEIFAKGQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRST 294
            F +       E   K   E+  K+  L FPV  N      +    I     E K  + +
Sbjct: 222 IFTYDATFPNMEKKFKTHQEIFSKLEKLTFPVPPNTAFVSGSK---IAKTIQEFKKQKDS 278

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L +  DGLV K+++ S +  LG  + SPRW  ++KF      ++++DI   +GRTG +TP
Sbjct: 279 LGFPTDGLVIKLNDISKRDALGYTSHSPRWARAYKFDAIMKESKIVDITYAVGRTGKITP 338

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A +EP+++ G  +T ATLHN+DYI  L            + +G  V V + GE+IP V 
Sbjct: 339 RAEIEPISLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVE 387

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
           +++     P  + F  P  CP C ++ ++       K            C  +    +  
Sbjct: 388 EVVT----PGKEVFKIPDRCPSCNTQTIK-------KESLVDLFCPNPDCPDRVKNGIIF 436

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           +  R   +IEGLG +Q++F +  +     I+  AD++ L+ +++    K+    GFG+ S
Sbjct: 437 YCQRKQMDIEGLGDKQIEFLYDHD----YIKSIADLYDLKDQKE----KLMEEEGFGEKS 488

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--IAHNN 592
           V  +   I + +       + SLG+  +G ++   L ++ +        I+ I  IA + 
Sbjct: 489 VNIILKGIEQSKQKDFRFLLPSLGLSELGHKVTELLIEHGID------SIDEILSIAKDQ 542

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENK 650
               SL+ +P +G    QA  E + + R +  +E  LK+    +      V+ +     +
Sbjct: 543 KKIESLLEIPGIGPSTIQAFQENFSDKRILKLIER-LKKAGLKMKADPIQVADQQPFAGQ 601

Query: 651 KLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
               TG+ +  Q R KA + +   G    + +S KT  ++ G   GSKLEKA +LGV + 
Sbjct: 602 SWCVTGSFENFQPRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGVSVY 661

Query: 710 NEEQFLFLLQ 719
           +E+QFL LL+
Sbjct: 662 DEKQFLDLLK 671


>gi|326774207|ref|ZP_08233489.1| DNA ligase, NAD-dependent [Actinomyces viscosus C505]
 gi|326636346|gb|EGE37250.1| DNA ligase, NAD-dependent [Actinomyces viscosus C505]
          Length = 818

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 170/494 (34%), Positives = 265/494 (53%), Gaps = 44/494 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           AR+  S L ++I    D YY    ++  + D++YD L R  + +  A P LAR+     P
Sbjct: 36  ARERWSELVRDIEAARDAYYNAIDAESPLSDADYDTLYRELEGLEAAHPLLARA---GSP 92

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG          H     SL+ ++++++++++  R+       DD  +  T E KI
Sbjct: 93  TRSVGGRAVTDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETGVGDDE-LAMTAEVKI 151

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  + + YE G    AA RGDG +GEDV+  +R I ++P VL+ +  P ++EVRGEVY 
Sbjct: 152 DGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGDAHPSLLEVRGEVYF 211

Query: 194 SKNDFLALNDEMIA--VGRKP--------YANPRNAASGILRRLNPT-DITRYLNFFVHG 242
              DF A N+E     V R+         +ANPRNAA+G LR+ NP    +R L    HG
Sbjct: 212 PTQDFEAFNEERRTRNVQRQADGAPLLQVFANPRNAAAGSLRQKNPAVTASRPLAMIAHG 271

Query: 243 LGKTS----EIFAKGQYEMLQKMRCLGFPVN--NGVRQANTFHGIVSYYNEMKSIRSTLP 296
           +G  +    E     Q+E  + +   G PV+  N V +        +Y     + R  L 
Sbjct: 272 VGAITPAPGESLPTRQHEWYELLAGWGLPVSPYNAVVRGRVER--EAYIERYAAHRHDLI 329

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           ++IDG+V+K+D+ SLQ++LG  +R PRW  ++K+  ++  TRLLDI +Q+GRTG +TP  
Sbjct: 330 HEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPFG 389

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            +EPV + G+ +  ATLHN         + +V R G  +R+GD V+V++AG+VIP+++  
Sbjct: 390 MMEPVLVAGSTVARATLHN---------ATEVARKG--VRIGDMVIVRKAGDVIPEILGP 438

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHF 475
           + + R    + F  P+ CP C +    +L P K G +    RC    +C AQ  ER+ H 
Sbjct: 439 VADLRDGSERDFVMPTHCPSCGT----ELAPAKDGDV--DLRCPNTRSCPAQLTERIAHI 492

Query: 476 VSRDAFNIEGLGKQ 489
            SR A ++EGLG +
Sbjct: 493 GSRGALDVEGLGDE 506


>gi|229817979|ref|ZP_04448261.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM
           20098]
 gi|229784583|gb|EEP20697.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM
           20098]
          Length = 927

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 169/501 (33%), Positives = 265/501 (52%), Gaps = 45/501 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +  + A +  + L   +      YY    P+  D+ YDA  R    +  AFP L   
Sbjct: 72  VSGMEADTAARLWAKLAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQRLEAAFPTL--- 128

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           ++P  P  ++GG  +     V H    +SL+ +++IE+L  +   + R     +   +  
Sbjct: 129 DNPQSPTRRVGGTFSNDFVSVRHPSRMMSLDDVFSIEELHDWYDGVLRGLDWPEGKPLPM 188

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEII 185
           + E KIDG  + + Y  G       RGDG +GED++  +R I TIP  L   + +IP+ +
Sbjct: 189 SCEVKIDGLALNLIYRHGVLEQGLTRGDGVTGEDITLNVRTIGTIPANLAGPTEDIPDFV 248

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           E+RGEV++  +DF  LNDE    GR+P+ANPRNAA+G LR+ +P    TR L+F+ HG+G
Sbjct: 249 EIRGEVFMRWDDFRRLNDEQEDAGREPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 308

Query: 245 KTS---------EIFAKGQ-YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSI 291
           +           EI  + + YE+  K    G PV+   R   +F  +   + YY E    
Sbjct: 309 RLEWGAGHAGHDEINDQSEAYELYTKW---GVPVSPHNRTVASFAEVLDMIDYYGEH--- 362

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R  + + +DG+V KVD+ +LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG 
Sbjct: 363 RGDIEHALDGIVVKVDDLALQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGR 422

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVA L+PV++ G+ +   TLHN   +K         R G  I +GD V+V++AG+VIP
Sbjct: 423 VTPVAMLKPVHVAGSTVARTTLHNPFEVK---------RKG--ILIGDTVVVRKAGDVIP 471

Query: 412 KVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           ++V  ++     R  + + F  P  CP C +++      K G      RC    +C AQ 
Sbjct: 472 ELVGPVLERRKGRESELREFVMPEHCPSCGAKLA---PAKEGD--KDIRCPNVESCPAQL 526

Query: 469 LERLKHFVSRDAFNIEGLGKQ 489
            ER+     R AF+IE LG Q
Sbjct: 527 TERVISLGMRKAFDIEHLGDQ 547



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 20/227 (8%)

Query: 500 PAFSIRIPADIFTLQRRQQTS---TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           P F++  P D   ++   +TS    T I  I+     +   + + I+K +   L R + +
Sbjct: 691 PGFNV--PDDAVVVREETKTSRSGETTITPIIVKPAENTRKMLEEIDKAKQADLWRVLVA 748

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L IR +G   AR +A    S       ++ I   + DD   L ++  VG  IA+++V ++
Sbjct: 749 LSIRRLGPPTARLIASAMGS-------LDAISKASVDD---LTQIDGVGPEIAESVVHWF 798

Query: 617 QNPRNICAV--EALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671
              R       + L    +  +G  E   SS    +  K +V TG+L+   R  A+E + 
Sbjct: 799 AAAREPGDWRGQTLTAWRAAGVGVGEAAKSSLPQTLAGKTVVVTGSLEGFSRDSAKEAIM 858

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + G   +  +S+KTD +++G N GSK  KA++LG+ +++E QF  LL
Sbjct: 859 ERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIPMLDEAQFELLL 905


>gi|219127319|ref|XP_002183885.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404608|gb|EEC44554.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 864

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 208/696 (29%), Positives = 339/696 (48%), Gaps = 95/696 (13%)

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDGTMITIRYEKG 146
           K  H  P LSL+ +   E+L  ++ RI +     D  +S+    EPK+DG  ++ RYE+ 
Sbjct: 181 KRPHVRPMLSLDNVHREEELLAWLERIRKKLTVDDGPSSLTILTEPKLDGLSLSCRYEQR 240

Query: 147 K-------FVYAALRGDGHSGEDVSACIRAIPTIPRVL----------SLNIPEIIEVRG 189
           +       FV+A+ RGDG  G+DV+  ++    +P  L          S   P+++E+RG
Sbjct: 241 QSNTTLYTFVWASTRGDGKQGQDVTHAVQQGNLVPLTLDWASLVADPESYTHPKVLEIRG 300

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL-RRLNPTD------ITRYLNFFVHG 242
           E+ +    F +L  E +A     +AN RNAASGIL R+ + TD      +   L F+ + 
Sbjct: 301 EIVLPTTVFQSLEGEGLA-----FANARNAASGILLRKESITDPVASQALREKLCFYAYD 355

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPV------------NNGVRQANTFHGIVSYYNEM-- 288
           +         G  ++ + +  LGF V            N      N    ++ Y++ M  
Sbjct: 356 VAGDDGFTVSG-VQLRRVLPTLGFRVPEPVAVTRLRLNNTTAWNVNDIQALLKYHHSMQH 414

Query: 289 -----KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343
                K+ ++   YD+DG V+KV E  L+  LG+  R+PRW I+HKFA   A T LLDI 
Sbjct: 415 HRQGKKTSQTYGDYDMDGAVHKVSESDLRIILGQSNRAPRWAIAHKFAPLAAVTTLLDIT 474

Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403
           +Q+GRTG LTPVA L+PV + G ++  ATLHN  +++      +V+     I     VLV
Sbjct: 475 VQVGRTGALTPVAILQPVELAGVVVRRATLHNFAHMQ------QVLGSTTTIAKESSVLV 528

Query: 404 KRAGEVIPKVVDIIVNERHPDAQPF-----SFPSFCPICQSRVVRD-LNPKTGKLVAAH- 456
           +RAG+VIP+VV  I          F     +FP  CP C S VV D +N    K  A   
Sbjct: 529 RRAGDVIPQVVQRIAGTDAGSNNGFDTISVAFPETCPACGSPVVTDEVNKTASKETAGQV 588

Query: 457 -RCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514
            RC G    C+ + +  + H VSRDA ++ GL + ++    +    A  I  P+DIF L 
Sbjct: 589 LRCGGPQWNCTPRAVGSIAHAVSRDALDVTGLSEARIMQLIE----AGFISRPSDIFALA 644

Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINK--RRNISLERFIFSLGIRHVGAEIARSLAK 572
            +  T   K+  + G+G  S  NL    N+  +  ISL RF++SLGIR  G   +  +A 
Sbjct: 645 -KSPTQLEKLAEMDGWGPKSAQNLAAVANRIAKNGISLSRFVYSLGIRFSGVHSSALIAA 703

Query: 573 YYLSYQNFAQEINNIIA----------HNNDDWLSLIRV-------PLVGDIIAQAIVEF 615
            Y S ++F +++                N++   S  R+         +G ++  ++  F
Sbjct: 704 AYGSVEDFLKDVEAASTLPIKQVQDQESNDEQVQSFARLREETDITKGIGPVLLNSLDTF 763

Query: 616 YQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            Q+   + A E+L   +       ++       +  +++  +VFTG++ ++ R +A+++ 
Sbjct: 764 AQDQELVEAAESLASSILVLADDSAMVVSTLATTGPLQDMAVVFTGSISEMSRSEAKKWA 823

Query: 671 TQLGA-VVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
             +GA      +S+ T +++ G+  G KLE+A++LG
Sbjct: 824 KVMGAKSTPGSISKLTGLVVAGEKGGKKLEQAEKLG 859


>gi|325922521|ref|ZP_08184282.1| NAD-dependent DNA ligase [Xanthomonas gardneri ATCC 19865]
 gi|325546986|gb|EGD18079.1| NAD-dependent DNA ligase [Xanthomonas gardneri ATCC 19865]
          Length = 590

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 188/606 (31%), Positives = 292/606 (48%), Gaps = 159/606 (26%)

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ML ++R  GFPV+  V       G+++YY  + + R  LP+DIDG+VYK+D+ + Q+++G
Sbjct: 1   MLAQLREWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLPFDIDGVVYKLDDLAGQREMG 60

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN 
Sbjct: 61  FVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNA 120

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  LD           +RVGD V+V+RAG+VIP+V  ++ ++R P  QP+  P+ CP+
Sbjct: 121 DQIARLD-----------VRVGDTVIVRRAGDVIPEVAGVVADQRPPGTQPWQMPTQCPV 169

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL----- 491
           C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ +     
Sbjct: 170 CGSEIVREEGE------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVD 223

Query: 492 --------DFFFKSEDPAFSIRI-----PADIFTLQRRQQTST---TKIEN--------I 527
                   D +  + D    +R+         F  + R+  +T    ++EN        +
Sbjct: 224 SGVVQGVADLYLLTVDQLLQLRLISTAESPHAFLREAREHLATGAYAQLENTVVSIGVDL 283

Query: 528 LGFGDVSVT--------------------------NLYDSINKRRNISLERFIFSLGIRH 561
            G  +V  T                          NL ++I K R+ +LERF+F+LGI H
Sbjct: 284 AGEREVPQTWQADLLRAGLPAFDWNRKKIATKWAENLIEAIEKSRDTTLERFLFALGIEH 343

Query: 562 V--------------------------------GAEIARSLAKYYLSYQNFAQEINNII- 588
           V                                G E+ARSL  ++L      Q I++++ 
Sbjct: 344 VGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLG-HFLDQPGNQQAIDDLLQ 402

Query: 589 -------AHNND----DWLSLIRV------PLVGDIIAQ---AIVEFYQNPRNICAVEAL 628
                  AH       D LS   V      P V  + AQ   A V+ +   R+  A +AL
Sbjct: 403 RGVRIGDAHPPSPKLRDALSFASVLEDMDIPKVTPVRAQQLAAAVDSFDALRSAGA-DAL 461

Query: 629 LKEVSPS---------IGRHEKNV-----------------------SSEIENKKLVFTG 656
           L+   P+         + R E                          +  ++ + +V TG
Sbjct: 462 LQAGVPAPVVASVQQWLERPENAALASDAQQAMETVLSRLPEADALQTGPLDGQTVVITG 521

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L 
Sbjct: 522 TLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLA 581

Query: 717 LLQQYN 722
            L ++ 
Sbjct: 582 FLGEHG 587


>gi|227494609|ref|ZP_03924925.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436]
 gi|226832343|gb|EEH64726.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436]
          Length = 806

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 162/486 (33%), Positives = 249/486 (51%), Gaps = 27/486 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++     +A  +   L  EI+     YY    P   D+EYD L      +   +P L  
Sbjct: 24  PVDTPVPAEATAKWRDLVTEINQMRFDYYNLDAPTASDAEYDVLFEELKDLEAKWPMLVT 83

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P   +GG    +   V H IP LSL+ ++++E   +++ R          N + 
Sbjct: 84  ---PDSPTQTVGGSAVNTFAPVAHRIPMLSLDDVFSVEATHQWLDRCLTGLGM---NQVE 137

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
              E K+DG  ++I YE G    AA RGDG  GEDV+A +  I  +PR L+ + P  +EV
Sbjct: 138 ILAEVKVDGLAVSILYENGLLTRAATRGDGRVGEDVTANVLTISNVPRQLTGDFPASVEV 197

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-- 244
           RGE+Y    DFL  N++    G K + N RNAA+G LR+ +P +   R L    HG+G  
Sbjct: 198 RGEIYFPIADFLDFNEQRALRGEKTFVNARNAAAGSLRQKDPAETAKRPLAMVCHGIGIY 257

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +  +     Q+   ++++  G PV+   R  +T   I          R+ L ++IDG+V+
Sbjct: 258 EGGQSQPDSQHAWYEQLKAWGLPVSEYTRLISTHAEIDEVIEYFGKHRADLSHEIDGMVF 317

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q  LG  +R+PRW  ++KF   +  TRLLDI  Q+GRTG +TP   +E V + 
Sbjct: 318 KVDSRQYQAALGTTSRAPRWAAAYKFPPTEVHTRLLDIRTQVGRTGRVTPYGVMEKVLVA 377

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ +++ATLHN+D +K         R G  + +GD V++++AG+VIP+++  + + R   
Sbjct: 378 GSHVSSATLHNQDEVK---------RKG--VLIGDMVILRKAGDVIPEILGPVESLRDGS 426

Query: 425 AQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            + F  PS CP C +     L P K G +    RC    +C AQ  +R+     R AF+I
Sbjct: 427 ERAFVMPSHCPSCGA----PLAPAKEGDV--DLRCPNQASCPAQITQRISFMGGRSAFDI 480

Query: 484 EGLGKQ 489
           EGLG +
Sbjct: 481 EGLGDE 486



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 18/190 (9%)

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
           +T + D + K +   L R + +L IRHVG   +++LA ++ S     Q     +A     
Sbjct: 624 LTKMLDQLEKAKQQPLWRVLNALSIRHVGPTASQALADHFRSLDALQQ---ASVAE---- 676

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK---- 650
              L  V  VG IIA+A+V ++Q    +   + ++   + S  R E   + E+       
Sbjct: 677 ---LAAVEGVGQIIAEAVVAWFQ----VDWHKHIVNTWAASGVRMEDEATEELPQTLAGL 729

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V +GT+    R  A+  +   GA  S+ +S+KT +++ G   GSK  KA+ LGV +++
Sbjct: 730 TIVVSGTMPGYDRESAKAAIIARGAKASSSVSKKTSLVVAGPGAGSKATKAETLGVPLVD 789

Query: 711 EEQFLFLLQQ 720
           E +F  LL +
Sbjct: 790 ETKFQLLLDE 799


>gi|329946006|ref|ZP_08293693.1| DNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528454|gb|EGF55432.1| DNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 811

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 169/495 (34%), Positives = 265/495 (53%), Gaps = 46/495 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           AR+    L ++I    D YY    ++  + D++YD L R  + +  A P LAR+     P
Sbjct: 27  ARERWGELVRDIEAARDAYYNAVDAESSLSDADYDVLYRELEDLEAAHPLLARA---GSP 83

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG          H     SL+ ++++++++++  R+       DD+ +  T E KI
Sbjct: 84  TRSVGGRAITDFTPAPHHERMYSLQDVFSLDEVQEWAERMMAETGVADDD-LAMTAEVKI 142

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  + + YE G    AA RGDG +GEDV+  +R I ++P VLS +  P ++EVRGEVY 
Sbjct: 143 DGLAVALTYENGILTRAATRGDGTTGEDVTGNVRTIASVPLVLSGDAHPSLLEVRGEVYF 202

Query: 194 SKNDFLALNDEMIA--VGRKP--------YANPRNAASGILRRLNPT-DITRYLNFFVHG 242
              +F A N++     V R+         +ANPRNAA+G LR+ NP    +R L    HG
Sbjct: 203 PTQEFEAFNEDRRTRNVQRQADGAPLLQVFANPRNAAAGSLRQKNPAITASRPLAMIAHG 262

Query: 243 LGKTS----EIFAKGQYEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTL 295
           +G  +    E     Q+E  + +   G PV   N  VR        +  Y    + R  L
Sbjct: 263 VGAITPAPGERLPARQHEWYELLAGWGLPVSPYNTVVRGRAEREAYIERY---ATHRHDL 319

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            ++IDG+V+K+D+ SLQ++LG  +R PRW  ++K+  ++  TRLLDI +Q+GRTG +TP 
Sbjct: 320 IHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPF 379

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
             +EPV + G+ +  ATLHN         + +V R G  +R+GD V+V++AG+VIP+++ 
Sbjct: 380 GMMEPVLVAGSTVARATLHN---------ATEVARKG--VRIGDMVIVRKAGDVIPEILG 428

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKH 474
            + + R    + F+ P+ CP C +    +L P K G +    RC    +C AQ  ER+ H
Sbjct: 429 PVADLRDGTERDFAMPTHCPSCGT----ELAPAKDGDV--DLRCPNTRSCPAQLTERIAH 482

Query: 475 FVSRDAFNIEGLGKQ 489
             SR A ++EGLG +
Sbjct: 483 IGSRGALDVEGLGDE 497



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 21/189 (11%)

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           +   +   R   L R + +L +RHVG   AR+LA  + S +               D   
Sbjct: 628 MLSQLRDARTRPLWRILVALSVRHVGPTAARALAARFRSLETLCHA----------DVAE 677

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK------ 651
           L  V  VG  IA++ V +    R++     +L     +  R  +  S + E         
Sbjct: 678 LAEVDGVGSTIAESWVRW----RDVDWHREILNRWEAAGVRTREEASDQQEEPARTLDGL 733

Query: 652 -LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+L+   R  A+E +   G   S  +SRKT  +IVGD  GSK  KA++LG+ I++
Sbjct: 734 TVVVTGSLEGFTRDSAKEAIVSRGGKASGSVSRKTSFVIVGDKAGSKEAKARELGLTILD 793

Query: 711 EEQFLFLLQ 719
           EE F+ LL+
Sbjct: 794 EEGFVSLLE 802


>gi|257066474|ref|YP_003152730.1| NAD-dependent DNA ligase LigA [Anaerococcus prevotii DSM 20548]
 gi|256798354|gb|ACV29009.1| DNA ligase, NAD-dependent [Anaerococcus prevotii DSM 20548]
          Length = 666

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 193/711 (27%), Positives = 354/711 (49%), Gaps = 79/711 (11%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIG 79
           + ++YH   YY   +P++ D EYD +          + +L + E+  G      P   +G
Sbjct: 15  ENLNYH---YYTLDEPLVSDGEYDQI----------YDELRKLEEETGYVRDDSPTQVVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF---------FTL 130
           GE+     K  H    LS  K    E+L  +I R  R    +DD +I          + +
Sbjct: 62  GEILDKFEKHFHITKLLSQNKAQTHEELEAWIDRCNRL---RDDYNINHDDKLAELEYIM 118

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K DG  + + Y  G  V AA RG+G  GE++S  +R I +IP    +    ++E++GE
Sbjct: 119 EYKFDGLTVNLTYNNGNLVNAATRGNGIIGEEISPQVRTIRSIPN--RIKEKSLLEIQGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
             +  ++    N+E          N RNAA+G LR LN  +   R L  + + +   +  
Sbjct: 177 ALMPLSELTRYNEE----NELQLKNARNAAAGALRNLNTKETAKRKLTAYFYSIPTNNLD 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           FA  + +ML+ ++  G  ++   ++ +    +++  + ++  R  +    DG+V K+++ 
Sbjct: 233 FATEE-DMLEFLKEQGLLIHPYHKKVHNLEEMLAELDFIEEERKNIDILTDGVVIKINDK 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+ LG   + PRW I++KF  ++ +T L ++   +GR+G +TP A L+PV   GA ++
Sbjct: 292 RTQEVLGSTNKFPRWSIAYKFEAEEYTTTLREVVWNVGRSGKVTPSAILDPVEFSGATVS 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATL+N D          ++R  + +R+G +V ++R+ +VIP+++  +V+E     +   
Sbjct: 352 RATLNNYD---------DIIR--KKVRIGSKVFIRRSNDVIPEILG-VVDENQEGTKEIE 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            PS CP C S +++      G +     C   ++C  Q L R++HF SR+A +IEGL ++
Sbjct: 400 KPSKCPYCGSELIQ------GNVHII--CPNSISCKPQLLARMEHFTSRNAMDIEGLSEK 451

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    +  D    I    DI+ L      S   + N+  FGD    NL ++I   + + 
Sbjct: 452 TIAQLMEELD----INEVDDIYDL------SYDDLINLDRFGDKKTKNLLNAIEASKKVD 501

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L+ FI+++GI +VG   +R LA  + S+        + + H + + LS   +  +G+I A
Sbjct: 502 LDNFIYAIGIPNVGERTSRDLANKFKSF--------DALRHASLEELS--DIDDIGEITA 551

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q I+E++++P    +++ LLK+          N S  + +   V TGT+   +R   ++ 
Sbjct: 552 QNIIEYFRDPNISKSIDNLLKKGIEISEVKADNNSDSLNDMTFVITGTIDNYKRDDIKKL 611

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   GA V+  +S+ TD+++ G+  GSK +KA+ LG++I   ++    L++
Sbjct: 612 LESNGAKVTGSVSKNTDVVLAGEKSGSKKDKAKNLGIEIYENDKLYDFLKE 662


>gi|320533083|ref|ZP_08033816.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320134698|gb|EFW26913.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 825

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 169/499 (33%), Positives = 264/499 (52%), Gaps = 54/499 (10%)

Query: 17  ARKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           AR+  S L ++I    D YY    ++  + D++YDAL R  + +  A P LAR+     P
Sbjct: 36  ARERWSELVRDIEAARDAYYNAIDAESPLSDADYDALYRELEGLEAAHPLLARA---GSP 92

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG          H     SL+ ++++++++++  R+       DD  +  T E KI
Sbjct: 93  TRSVGGRAITDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETGVGDDE-LAMTAEVKI 151

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  + + YE G    AA RGDG +GEDV+  +R I ++P VL+ +  P ++EVRGEVY 
Sbjct: 152 DGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGDAHPSLLEVRGEVYF 211

Query: 194 SKNDFLALNDE--------------MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
              +F + N+E              ++ V    +ANPRNAA+G LR+ NP    +R L  
Sbjct: 212 PTQEFESFNEERRTRNLQRQADGTPLLQV----FANPRNAAAGSLRQKNPAVTASRPLAM 267

Query: 239 FVHGLGKTS----EIFAKGQYEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSI 291
             HG+G  +    E     Q+E  + +   G PV   N  VR        +  Y    + 
Sbjct: 268 IAHGVGAITPAPGEKLPTRQHEWYELLAGWGLPVSPYNTVVRGRAEREAYIERY---ATH 324

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R  L ++IDG+V+K+D+ SLQ++LG  +R PRW  ++K+  ++  TRLLDI +Q+GRTG 
Sbjct: 325 RHDLIHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGR 384

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TP   +EPV + G+ +  ATLHN         + +V R G  +R+GD V+V++AG+VIP
Sbjct: 385 VTPFGMMEPVLVAGSTVARATLHN---------ATEVARKG--VRIGDMVIVRKAGDVIP 433

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLE 470
           +++  +   R    + F  P+ CP C +    +L P K G +    RC    +C AQ  E
Sbjct: 434 EILGPVAELRDGSERDFVMPTHCPSCGT----ELAPAKDGDV--DLRCPNTRSCPAQLTE 487

Query: 471 RLKHFVSRDAFNIEGLGKQ 489
           R+ H  SR A ++EGLG +
Sbjct: 488 RIAHIGSRGALDVEGLGDE 506



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 13/189 (6%)

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           + T +   + + R   L R + +L +RHVG   AR+LA  + S +   Q           
Sbjct: 633 NATAMISQLRQARTRPLWRILVALSVRHVGPTAARALAARFRSLEALCQA---------- 682

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNP--RNICA-VEALLKEVSPSIGRHEKNVSSEIENK 650
           D   L  V  VG  IA++ V + +    R I +  EA            ++  +  +E  
Sbjct: 683 DVAELAEVDGVGPTIAESWVRWREVDWHREILSRWEAAGVRTREETSDQQEEPARTLEGL 742

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+L++  R  A+E +   G   S  +S+KT  ++VGD  GSK  KA+ LG+ I++
Sbjct: 743 TIVVTGSLERFTRDSAKEAIVSRGGKASGSVSKKTSFVVVGDKAGSKESKARDLGLTILD 802

Query: 711 EEQFLFLLQ 719
           E+ F+ LL+
Sbjct: 803 EDGFVALLE 811


>gi|325068288|ref|ZP_08126961.1| DNA ligase (NAD(+)) [Actinomyces oris K20]
          Length = 818

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 168/495 (33%), Positives = 265/495 (53%), Gaps = 46/495 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           AR+  S L ++I    D YY    ++  + D++YD L R  + +  A+P LAR+     P
Sbjct: 36  ARERWSELVRDIEAARDAYYNAIDAESPLSDADYDLLYRELEGLEAAYPLLARA---GSP 92

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG          H     SL+ ++++++++++  R+       DD  +  T E KI
Sbjct: 93  TRSVGGRAVTDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETGVGDDE-LAMTAEVKI 151

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  + + YE G    AA RGDG +GEDV+  +R I ++P VL+ +  P ++EVRGEVY 
Sbjct: 152 DGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGDAHPSLLEVRGEVYF 211

Query: 194 SKNDFLALNDE--MIAVGRKP--------YANPRNAASGILRRLNPT-DITRYLNFFVHG 242
              +F A N+E   + + R+         +ANPRNAA+G LR+ NP    +R L    HG
Sbjct: 212 PTQEFEAFNEERRTLNLQRQADGAPLLQVFANPRNAAAGSLRQKNPAVTASRPLAMIAHG 271

Query: 243 LGKTS----EIFAKGQYEMLQKMRCLGF---PVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           +G  +    E     Q+E  + +   G    P N  VR        +  Y    + R  L
Sbjct: 272 VGAITPAPGERLPTRQHEWYELLAGWGLAVSPYNAVVRGRAEREAYIERY---ATHRHDL 328

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            ++IDG+V+K+D+ SLQ++LG  +R PRW  ++K+  ++  TRLLDI +Q+GRTG +TP 
Sbjct: 329 IHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPF 388

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
             +EPV + G+ +  ATLHN         + +V R G  +R+GD V+V++AG+VIP+++ 
Sbjct: 389 GMMEPVLVAGSTVARATLHN---------ATEVARKG--VRIGDMVIVRKAGDVIPEILG 437

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKH 474
            + + R    + F  P+ CP C +    +L P K G +    RC    +C AQ  ER+ H
Sbjct: 438 PVADLRDGSERDFVMPTHCPSCGT----ELAPAKAGDV--DLRCPNTRSCPAQLTERIAH 491

Query: 475 FVSRDAFNIEGLGKQ 489
             SR A ++EGLG +
Sbjct: 492 IGSRGALDVEGLGDE 506



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 13/189 (6%)

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           + T +   + + R+  L R + +L +RHVG   AR+LA  + S +   Q           
Sbjct: 633 NATAMLSQLRQARSRPLWRILVALSVRHVGPTAARALAARFRSLEALCQA---------- 682

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNP--RNICA-VEALLKEVSPSIGRHEKNVSSEIENK 650
           D   L  V  VG  IA++ V + +    R I +  EA            ++  +  +E  
Sbjct: 683 DVAELAEVDGVGPTIAESWVRWREVDWHREILSRWEAAGVRTWEEDSEEQEEPARTLEGL 742

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+L+   R  A+E +   G   S  +S+KT  ++VGD  GSK  KA++LG+ I++
Sbjct: 743 TVVVTGSLEGFTRDSAKEAIVSRGGKASGSVSKKTSFVVVGDKAGSKETKARELGLTILD 802

Query: 711 EEQFLFLLQ 719
           EE F+ LL+
Sbjct: 803 EEGFVALLE 811


>gi|311900456|dbj|BAJ32864.1| putative DNA ligase [Kitasatospora setae KM-6054]
          Length = 718

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 209/730 (28%), Positives = 341/730 (46%), Gaps = 93/730 (12%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY      + D EYDAL R   A   A P+   ++ P G   K+ G    +   V HS+P
Sbjct: 34  YYGDGTTTLGDDEYDALVRAIAAYEEAHPEELLADSPTG---KVAG--GAAEGDVPHSVP 88

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ +++ E+L  +   + R   +       + +EPK+DG  I  RYE G       R
Sbjct: 89  MLSLDNVFSGEELADWAASLERRLGRAPAG---WCVEPKLDGLAIAARYEGGALRRVLTR 145

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           G+G +GED++     +  +P VL+   P  +E+RGEV ++   F   N+   A G  P+A
Sbjct: 146 GNGLAGEDITHTAGDVLGLPAVLAE--PVDVELRGEVLLTHAQFERANEIRTAHGAVPFA 203

Query: 215 NPRNAASGILR-RLNPTDITRYLNFFVH---GL--------GKTSEIFAKGQY------- 255
           N RN A+G LR +  P  I   L FF +   GL        G+T +    GQ        
Sbjct: 204 NARNGAAGTLRAKDRPYRIE--LTFFAYDAVGLDENPGEKPGETPD-ETPGQAPSRALDH 260

Query: 256 -EMLQKMRCLGFPVNNGVR----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +L+++  LG            +  +   +     ++ ++R  LP+ IDG+V K D  +
Sbjct: 261 SALLERLAALGANTAASTAAAPLRCESIEEVQRRIEQITALRPQLPFGIDGVVVKADAAA 320

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++ G  +R+PRW ++ K A +   TRLL+++  +GRTGI+ P A LEPV I G  +T 
Sbjct: 321 DQERAGSGSRAPRWAVARKLAAEHKVTRLLEVEWAVGRTGIIAPRAVLEPVVIDGVTVTY 380

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   I+            R + +GDRV V RAG+VIP+V   +V ER  + +P  F
Sbjct: 381 ATLHNPADIE-----------RRGLMLGDRVFVYRAGDVIPRVEAPLVEERTGEERPIVF 429

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C   +  D + +        RC  G  C  Q +  + +   RD  +IEGLG  +
Sbjct: 430 PAACPRCGEAI--DSSEQR------WRCVRGRNC--QAVASIIYAAGRDQLDIEGLGSTR 479

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                +    A  +R  AD+FTL R Q     ++      G+ S  NL  +I   R   L
Sbjct: 480 AVQLVE----AGLVRDLADVFTLTREQLLGLERM------GETSTDNLLAAIATARTRPL 529

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSY--------------QNFAQEINNIIAHNNDDWL 596
            R + +LG+R  G  ++R +A ++ S               +    E   ++     +  
Sbjct: 530 GRVLCALGVRGTGRSMSRRIAAHFGSMAAIRAADAETLAAVEGIGPEKARLVVSELAELT 589

Query: 597 SLIRVPLVGDIIAQ-AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
           +L+      D +A+  +      P+   A +   +E   +    +   +  +  + +V T
Sbjct: 590 TLL------DRLAELGVGTQVTAPQRPTAPKPAAEETGEAAEDADAPAAGPLSGEAVVVT 643

Query: 656 GT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           G+    L  + R++  E V + G   S+ +S++T +++ G+  GSK  KA++LG++I+  
Sbjct: 644 GSMTGALAALTRNEMNELVERAGGKASSAVSKRTTLLVAGEKAGSKRAKAEELGIRILTP 703

Query: 712 EQFLFLLQQY 721
           E F  LL  +
Sbjct: 704 EDFATLLADH 713


>gi|322379711|ref|ZP_08054024.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS5]
 gi|321147860|gb|EFX42447.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS5]
          Length = 762

 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 223/778 (28%), Positives = 361/778 (46%), Gaps = 130/778 (16%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           + +YH   YY  + P+I D+ YD L R+       +P   ++  P  P  ++GG +  +L
Sbjct: 17  QYAYH---YYVLASPLISDAIYDQLYRQVLDYETKYP---QNILPYSPTQRVGGVVLETL 70

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIY----------RFWQKKDDNSIF-FTLEPKID 135
            K TH +   SLE ++N+E+L+ +I RI           R  Q     S   FT  PK+D
Sbjct: 71  PKHTHKVRMWSLENVFNLEELQVWINRIVESEHALKTKGRISQTYPSASFTRFTCSPKLD 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE G+   A++RG+G  GE V+   + I +IP ++    P  IE+RGEV + +
Sbjct: 131 GASLNLYYENGQLQSASMRGNGLEGELVTHNAKTIHSIPLIIPYTKP--IEIRGEVVLQR 188

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +AN RNA  G LR+L+      R L F+  GLG   E +   +
Sbjct: 189 EDFKALNAERLKQNLPLFANARNATVGSLRQLDSKIAAQRKLTFYPWGLGLVEEKYTSLK 248

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             M Q ++  GF ++       +   I   +    + RS + +D DG+V  +D+  LQ  
Sbjct: 249 QSM-QMVKDWGF-LSLEFVLCESLEAIEETFKLFHTRRSEVTFDADGMVVMLDDLYLQSI 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SPR+  ++KF   +  T+LLD+  Q+GR+G +TPVA LEP+ + GA I+ ATL 
Sbjct: 307 LGFTIKSPRFGFAYKFPATEKHTKLLDVLNQVGRSGAITPVALLEPIKLEGACISKATLD 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS-- 432
           N   I+            + + + D V++ R+G+VIPK++  + + R+   +P + P+  
Sbjct: 367 NYTQIQQ-----------QGLMINDTVVIVRSGDVIPKIIKPLKHLRNGTQKPITPPTHC 415

Query: 433 -----------------------------FCPICQ--------SRVVRDLNPKTGKLVA- 454
                                        FCP CQ          V + L  K  K    
Sbjct: 416 PACQSVLQKQPLNVCPECNLPLLLKNKPNFCPKCQILFKKYTHCPVCQTLLGKQHKKCPQ 475

Query: 455 -----------------------AHRCTGGLA------------CSAQQLERLKHFVSRD 479
                                   +RC   L+            C A+  E + +F S+ 
Sbjct: 476 CQSDVTFPKHCLQCGGDLELKEYCYRCDLDLSNKDRYLFCPNKDCIARVKESIVYFASKH 535

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
              I+GLG + +    +    A  I+   D+++L+ +            G+      NL 
Sbjct: 536 GLEIKGLGDKVVAQLLQ----AGLIKGVIDLYSLEEKALLELE------GWQQKKAQNLL 585

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY--LSYQNFAQEINNIIAHNNDDWLS 597
            +I K +   L RFI +LGI H+G   ++ LA+++    +    QEI ++          
Sbjct: 586 QAITKSKQAPLWRFISALGIEHIGKGASKILAQHFGLEVFDKTYQEIASLEGFGAKGLKE 645

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
             +       IA + V F +  + +  ++ LL  V+P I   +K   S  ++KK+V TG+
Sbjct: 646 EEKK------IAASFVRFVKENKGL--IKQLLTLVNP-IATEKKITPSFFKDKKIVITGS 696

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           L+K  R +    +  LGA V   +S KTD++I G+NPGSKLEKA++LG+++M E  FL
Sbjct: 697 LEK-PRTEISALLESLGAHVQTGVSSKTDLLIYGENPGSKLEKAKKLGIEVMEEVTFL 753


>gi|28572508|ref|NP_789288.1| DNA ligase [Tropheryma whipplei TW08/27]
 gi|81629879|sp|Q83HX4|DNLJ_TROW8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28410640|emb|CAD67026.1| DNA ligase [Tropheryma whipplei TW08/27]
          Length = 628

 Score =  267 bits (683), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 190/626 (30%), Positives = 315/626 (50%), Gaps = 76/626 (12%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSI 93
           YYQ +  ++ D EYDAL+       HA        D N P   +G    L+LF+ V H  
Sbjct: 26  YYQENTSLMSDVEYDALEHELKDAEHA----KGFSDRNSPSLTVGIAAQLNLFEPVKHIE 81

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL+ +++++ L  +  +  +   + D  +  F  E KIDG  +++RY  G  + AA 
Sbjct: 82  PMLSLDNVFSLDQLHSWYEKTKKICPEGDQCT--FVCELKIDGVGVSLRYANGYLISAAT 139

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  +P+IP  ++L  P I E+RGE +I +++F  +N ++     K +
Sbjct: 140 RGDGAIGEDITQNMLYVPSIPPRIAL--PGIFEIRGEAFIKRDEFDRIN-QLSLERSKQF 196

Query: 214 ANPRNAASGILRRLNPTDITRYL---NFFVHGLGKT-----------SEIFAKG------ 253
           ANPRN  SG +R   P    RYL   +F+ HG  +            S+I A G      
Sbjct: 197 ANPRNFVSGCIRTKTPN--MRYLESISFYAHGFTQVYGYTSGGMNLHSDITASGGVKTEI 254

Query: 254 ---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +    ++     PVN+  R    F  I SY   ++  R  +PY IDG+V K+D   
Sbjct: 255 EHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQCVPYAIDGIVVKIDSLQ 314

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG   ++PRW +++KF  +   TRLLDI++ +GRTG +TP A L+P+ + G+ ++ 
Sbjct: 315 KQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSVGRTGRVTPYAVLQPIQLDGSEVSR 374

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+  I           G +D+ +GD V +++AG+++P+V+  +  +R      F  
Sbjct: 375 ATLHNQKVI-----------GDKDLLIGDYVRIRKAGDIVPEVLCALPEKRDGSEVLFKM 423

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ- 489
           PS CP C + +   +  K G +    RC    +C  Q   RL++  SR   +I  L ++ 
Sbjct: 424 PSLCPSCGAEL---MPSKLGDI--DLRCPNMQSCLVQLAGRLEYIGSRGVLDIAYLAEEN 478

Query: 490 -----QLDFFFKS-EDPAFSIRIPADIFTLQRRQQTST-----TKIENILGFGDV--SVT 536
                 L  F KS E   F I I  D+  L+   + +       K ++  GF +   S  
Sbjct: 479 AYALSHLRKFGKSAEVQLFKITID-DLVALEFMYKGNMRSPFRKKGDSFPGFEEPTKSAQ 537

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           ++ DSI + +   L +F+ +L IRH+G   A++LA ++ S       I +II    D+  
Sbjct: 538 DMVDSIERAKRSPLWKFLLALNIRHIGPASAKALADHFGS-------IESIINAKIDE-- 588

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNI 622
            L++V  +G+ IA ++ +++++P  +
Sbjct: 589 -LLKVRSLGETIAISVHDWFRDPWRV 613


>gi|166216282|sp|Q83G99|DNLJ_TROWT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 628

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 190/626 (30%), Positives = 315/626 (50%), Gaps = 76/626 (12%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSI 93
           YYQ +  ++ D EYDAL+       HA        D N P   +G    L+LF+ V H  
Sbjct: 26  YYQENTSLMSDVEYDALEHELKDAEHA----KGFSDRNSPSLTVGIAAQLNLFEPVKHIE 81

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL+ +++++ L  +  +  +   + D  +  F  E KIDG  +++RY  G  + AA 
Sbjct: 82  PMLSLDNVFSLDQLHSWYEKTKKICPEGDQCT--FVCELKIDGVGVSLRYANGYLISAAT 139

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  +P+IP  ++L  P I E+RGE +I +++F  +N ++     K +
Sbjct: 140 RGDGAIGEDITQNMLYVPSIPPRIAL--PGIFEIRGEAFIKRDEFDRIN-QLSLERSKQF 196

Query: 214 ANPRNAASGILRRLNPTDITRYL---NFFVHGLGKT-----------SEIFAKG------ 253
           ANPRN  SG +R   P    RYL   +F+ HG  +            S+I A G      
Sbjct: 197 ANPRNFVSGCIRTKTPN--MRYLESISFYAHGFTQVYGYTSGGMNLHSDITASGGVKTEI 254

Query: 254 ---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +    ++     PVN+  R    F  I SY   ++  R  +PY IDG+V K+D   
Sbjct: 255 EHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQCVPYAIDGIVVKIDSLQ 314

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG   ++PRW +++KF  +   TRLLDI++ +GRTG +TP A L+P+ + G+ ++ 
Sbjct: 315 KQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSVGRTGRVTPYAVLQPIQLDGSEVSR 374

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+  I           G +D+ +GD V +++AG+++P+V+  +  +R      F  
Sbjct: 375 ATLHNQKVI-----------GDKDLLIGDYVRIRKAGDIVPEVLCALPEKRDGSEVLFKM 423

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ- 489
           PS CP C + +   +  K G +    RC    +C  Q   RL++  SR   +I  L ++ 
Sbjct: 424 PSLCPSCGAEL---MPSKLGDI--DLRCPNMQSCLVQLAGRLEYIGSRGVLDIAYLAEEN 478

Query: 490 -----QLDFFFKS-EDPAFSIRIPADIFTLQRRQQTST-----TKIENILGFGDV--SVT 536
                 L  F KS E   F I I  D+  L+   + +       K ++  GF +   S  
Sbjct: 479 AYALSHLRKFGKSAEVQLFKITI-DDLVALEFMYKGNMRSPFRKKGDSFPGFEEPTKSAQ 537

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           ++ DSI + +   L +F+ +L IRH+G   A++LA ++ S       I +II    D+  
Sbjct: 538 DMVDSIERAKRSPLWKFLLALNIRHIGPASAKALADHFGS-------IESIINAKIDE-- 588

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNI 622
            L++V  +G+ IA ++ +++++P  +
Sbjct: 589 -LLKVRSLGETIAISVHDWFRDPWRV 613


>gi|145218922|ref|YP_001129631.1| DNA ligase, NAD-dependent [Prosthecochloris vibrioformis DSM 265]
 gi|145205086|gb|ABP36129.1| DNA ligase, NAD-dependent [Chlorobium phaeovibrioides DSM 265]
          Length = 488

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 176/535 (32%), Positives = 278/535 (51%), Gaps = 56/535 (10%)

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K DF ALND      R  +ANPRNA +G L+  +  ++  R L F  + L    +   
Sbjct: 1   MRKEDFTALNDTRPEEDR--FANPRNATAGTLKLQDSAEVAVRRLWFVAYYLDGIQDPDT 58

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +  LQ +   GF      R       I ++       R  LPY+ DG+V K+++   
Sbjct: 59  P-HFHRLQLLETAGFFTGGHYRLCKGMQEIAAFIARWNEERWHLPYETDGVVLKLNDVRQ 117

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            K LG  ++SPRW I++K+  +QA+T L D+  Q+GR G +TPVA LEPV + G+ ++ +
Sbjct: 118 WKTLGATSKSPRWAIAYKYPAQQATTVLRDVVFQVGRLGTITPVAELEPVRLAGSTVSRS 177

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D ++ L            I +GDRV+++++GEVIPKV+ ++   R  DA+    P
Sbjct: 178 TLHNFDEMRRL-----------GIMIGDRVVIEKSGEVIPKVIRVVTEARPVDARLVELP 226

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK--- 488
           S CP C + +VR+     G++     C     C AQ   R+ HF SR+A +I+ LG+   
Sbjct: 227 SRCPACSTPIVRE----EGEV--GFYCPNEAGCPAQLKGRILHFASRNAMDIQNLGEALV 280

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +QL  F    D       P D++ LQ  Q      + N+   G  S  N+  ++++ R+ 
Sbjct: 281 EQLVAFGLVHD-------PGDLYFLQEPQ------LRNLERMGPKSAQNVVRALDESRSQ 327

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S  R +F+LGIRHVG   AR LA+ + S +         +A   D          +G +I
Sbjct: 328 SYARLLFALGIRHVGQATARELARAFPSIEALEAASEEELADVAD----------IGPVI 377

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS----PSIGRHEKN-VSSEIENKKLVFTGTLQKIQR 663
           A++I E+++ P    AV ALL+++     P      K  ++S  E   +VFTG L +  R
Sbjct: 378 ARSIREWFEAP----AVSALLEKLRDARLPLAAEDPKPLINSNFEGLSVVFTGALLRHDR 433

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             A E V + G  + + +S+KT +++ G   GSKLEKA +LG+++++EE+F  +L
Sbjct: 434 QSASELVLERGGKIVSTVSKKTGLVVAGREAGSKLEKALKLGLRVISEEEFEAML 488


>gi|308235729|ref|ZP_07666466.1| DNA ligase (NAD(+)) [Gardnerella vaginalis ATCC 14018]
 gi|311114720|ref|YP_003985941.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019]
 gi|310946214|gb|ADP38918.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019]
          Length = 960

 Score =  266 bits (681), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 170/516 (32%), Positives = 264/516 (51%), Gaps = 53/516 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+ EQA +  + L          YY    P   D+ YD   R   ++   FP L   + P
Sbjct: 99  LTSEQAARLWAKLAAWAQSDQIAYYVDDSPSSSDAAYDTRMRVLSSLESTFPIL---DTP 155

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P +++GG  +     V H    +SL+ ++++E+L+ +   I R  +   +  +  T E
Sbjct: 156 QSPTHRVGGTFSNDFASVKHPSRMMSLDDVFSLEELKSWYDSIIRDLKWPQNKPLPMTCE 215

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEV 187
            KIDG  + + Y  G       RGDG +GED+S  +R I  IP  L    S +IPE +E+
Sbjct: 216 VKIDGLALNLIYRNGTLEQGLTRGDGVTGEDISLNVRTIEEIPTQLKCENSDDIPEFVEI 275

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG-- 244
           RGEV++   DF  LN E   +G+  +ANPRNAA+G LR+ +P    TR L+F  HGLG  
Sbjct: 276 RGEVFMKWADFRKLNIEQEDLGKPAFANPRNAAAGSLRQKDPRITATRRLSFIAHGLGDL 335

Query: 245 ---------------KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYN 286
                          K +       YE+ +K    G PV+   R+  +F  I   + YY 
Sbjct: 336 KWKDSVRNDSEHKSHKQTSFNQSDAYELYKKW---GIPVSPYTRKVTSFEQIEDMIEYYG 392

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346
           E    R+++ + +DG+V KVD+ +LQ++LG  +R+PRW I++K+  ++ +T L DI +Q+
Sbjct: 393 EH---RNSIIHALDGIVVKVDDRALQRELGSTSRAPRWAIAYKYPPEEVNTVLKDIVVQV 449

Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406
           GRTG +TPVA L+PV + G+ I+  TLHN   ++            + + +GD V+V++A
Sbjct: 450 GRTGRVTPVAVLDPVTVAGSTISRTTLHNPYEVE-----------HKGVLIGDTVVVRKA 498

Query: 407 GEVIPKVVDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
           G+VIP++V  ++  R  +    + F  P +CP C S++      K G      RC     
Sbjct: 499 GDVIPELVGPVLKYRDGNESKLRKFVMPEYCPSCGSKLAP---AKEGD--KDIRCPNVEN 553

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           C AQ  ER+ +  SR AF+IE LG+         ED
Sbjct: 554 CPAQLTERIINLASRHAFDIENLGESSALALTNPED 589



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 17/182 (9%)

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K ++ +L R + +L IR +G   AR +A  + S +N ++      A   D    L ++  
Sbjct: 768 KGKSATLWRVLVALSIRRLGPPTARLIAARFGSIENISK------ASVED----LTQIDG 817

Query: 604 VGDIIAQAIVEFYQNPRNI--CAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTG 656
           VG  IAQA+ ++++  +N      E L K      V  S   +  ++   +  K +V TG
Sbjct: 818 VGPEIAQAVYDWFEKSKNPQDWRSEVLRKWNEAGVVGSSDSSNADSIEQTLSGKTVVVTG 877

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+   R  A+E ++  G   ++ +S+KT  +IVG+N GSK  KA++LG+ +++E QF  
Sbjct: 878 SLEGFTRDSAKEAISSRGGKAASSVSKKTYCVIVGENAGSKATKAEELGIPMLDENQFKI 937

Query: 717 LL 718
           LL
Sbjct: 938 LL 939


>gi|237751760|ref|ZP_04582240.1| NAD-dependent DNA ligase LigA [Helicobacter bilis ATCC 43879]
 gi|229373126|gb|EEO23517.1| NAD-dependent DNA ligase LigA [Helicobacter bilis ATCC 43879]
          Length = 686

 Score =  266 bits (681), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 215/724 (29%), Positives = 339/724 (46%), Gaps = 101/724 (13%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPD-LARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+   PI  D EYD L +          D +A+    + P  +IG ++     K  H  
Sbjct: 24  YYELDDPIASDFEYDMLYKAVKLYEENNIDKIAK----DSPTQRIGDKILKDFSKNKHKK 79

Query: 94  PTLSLEKIWNIEDLRKFITRIYRF-----------------WQKKDDNSIFFTLEPKIDG 136
              SLE I+N  DL +++T++                     Q    N++ F + PK DG
Sbjct: 80  RMWSLEDIFNPSDLDEWLTKLSNAIARVQKTTLSPTLFDTETQIDSINNLAFCISPKYDG 139

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G    A  RGDG  GE V+   + + ++P  +       IE+RGEV +SK 
Sbjct: 140 MSLNLLYENGILQSATTRGDGEIGEVVTQNAKTLHSLPHTIPFKGS--IEIRGEVVLSKE 197

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLG----KTSEIF 250
           +F  LN E     +  +ANPRNAA+G +R+L+ +++TR   L+F   G+G    K  E +
Sbjct: 198 NFARLNKEQERNNKALFANPRNAAAGSMRQLD-SNLTRERNLSFVAWGIGSVDMKELEKY 256

Query: 251 AK----GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           AK    G Y+ML  +   GF     + + N    I   Y ++ + R   P+ +DG V  +
Sbjct: 257 AKRSNLGFYDMLMLLPEFGFSPFRYLERVNA-ESIEREYQKILNDRDNYPFMLDGFVIVL 315

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ +LG   ++PR+  ++KF   +    +  I  Q+GRTGI+TPVA  +P  + GA
Sbjct: 316 DDLALQDKLGFTQKAPRFACAYKFPATEVVINIESITPQVGRTGIITPVANFKPTPLDGA 375

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+ ATLHN    K +D         +DIR+ D  L+ R+G+VIPK+  ++   R  D  
Sbjct: 376 FISRATLHN---YKEIDQ--------KDIRIRDYCLLVRSGDVIPKITKVLHERRKGDEI 424

Query: 427 PFSFPSFCPICQSRVVRD------LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
             + P+ CPIC   +  +       NP    ++ A               +L HF S+  
Sbjct: 425 KIAKPTHCPICSHELSYEDIYIYCTNPNCDAIIKA---------------KLIHFASKKC 469

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTN 537
            +I+GLG   ++    +      I+   DI++L+          E+ L   GF +    N
Sbjct: 470 MDIDGLGSSIIELLVDNG----VIKECKDIYSLKE---------EDFLRFEGFKEKKAQN 516

Query: 538 LYDSINKR-RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           L ++I     N    RFI +LGI H+G   ++ LA Y   Y+ F  +I            
Sbjct: 517 LINAIKDSIENREFWRFIHALGILHIGEVASKKLASY--GYEIFDYDIE----------- 563

Query: 597 SLIRVPLVGDIIAQAIVEF-YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
            L  +   G  +AQ+  +F   N   I  ++ +LK     +   + N  S    K  V T
Sbjct: 564 KLQEIEGFGKDMAQSFYDFCIHNKDFINEMQEILKP-QLQVKTTQINTDSIFYQKTCVIT 622

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GT   + R   +  +  LGA VS+ +S KTD +I G+  GSKL KAQ+LG+KI+   + +
Sbjct: 623 GTFA-LSRDSIKAKLESLGAKVSSSISTKTDFLIAGEKAGSKLTKAQELGIKIIESSELM 681

Query: 716 FLLQ 719
            +L+
Sbjct: 682 QILE 685


>gi|28493381|ref|NP_787542.1| DNA ligase [Tropheryma whipplei str. Twist]
 gi|28476422|gb|AAO44511.1| DNA ligase [Tropheryma whipplei str. Twist]
          Length = 634

 Score =  266 bits (681), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 190/626 (30%), Positives = 315/626 (50%), Gaps = 76/626 (12%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSI 93
           YYQ +  ++ D EYDAL+       HA        D N P   +G    L+LF+ V H  
Sbjct: 32  YYQENTSLMSDVEYDALEHELKDAEHA----KGFSDRNSPSLTVGIAAQLNLFEPVKHIE 87

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL+ +++++ L  +  +  +   + D  +  F  E KIDG  +++RY  G  + AA 
Sbjct: 88  PMLSLDNVFSLDQLHSWYEKTKKICPEGDQCT--FVCELKIDGVGVSLRYANGYLISAAT 145

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  +P+IP  ++L  P I E+RGE +I +++F  +N ++     K +
Sbjct: 146 RGDGAIGEDITQNMLYVPSIPPRIAL--PGIFEIRGEAFIKRDEFDRIN-QLSLERSKQF 202

Query: 214 ANPRNAASGILRRLNPTDITRYL---NFFVHGLGKT-----------SEIFAKG------ 253
           ANPRN  SG +R   P    RYL   +F+ HG  +            S+I A G      
Sbjct: 203 ANPRNFVSGCIRTKTPN--MRYLESISFYAHGFTQVYGYTSGGMNLHSDITASGGVKTEI 260

Query: 254 ---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +    ++     PVN+  R    F  I SY   ++  R  +PY IDG+V K+D   
Sbjct: 261 EHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQCVPYAIDGIVVKIDSLQ 320

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG   ++PRW +++KF  +   TRLLDI++ +GRTG +TP A L+P+ + G+ ++ 
Sbjct: 321 KQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSVGRTGRVTPYAVLQPIQLDGSEVSR 380

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+  I           G +D+ +GD V +++AG+++P+V+  +  +R      F  
Sbjct: 381 ATLHNQKVI-----------GDKDLLIGDYVRIRKAGDIVPEVLCALPEKRDGSEVLFKM 429

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ- 489
           PS CP C + +   +  K G +    RC    +C  Q   RL++  SR   +I  L ++ 
Sbjct: 430 PSLCPSCGAEL---MPSKLGDI--DLRCPNMQSCLVQLAGRLEYIGSRGVLDIAYLAEEN 484

Query: 490 -----QLDFFFKS-EDPAFSIRIPADIFTLQRRQQTST-----TKIENILGFGDV--SVT 536
                 L  F KS E   F I I  D+  L+   + +       K ++  GF +   S  
Sbjct: 485 AYALSHLRKFGKSAEVQLFKITID-DLVALEFMYKGNMRSPFRKKGDSFPGFEEPTKSAQ 543

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           ++ DSI + +   L +F+ +L IRH+G   A++LA ++ S       I +II    D+  
Sbjct: 544 DMVDSIERAKRSPLWKFLLALNIRHIGPASAKALADHFGS-------IESIINAKIDE-- 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNI 622
            L++V  +G+ IA ++ +++++P  +
Sbjct: 595 -LLKVRSLGETIAISVHDWFRDPWRV 619


>gi|57168176|ref|ZP_00367315.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
 gi|57020550|gb|EAL57219.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
          Length = 467

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 162/467 (34%), Positives = 257/467 (55%), Gaps = 40/467 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93
           YY+  +P+  D EYDAL R        F +  + E   + P  KI   +     K+ H  
Sbjct: 20  YYEKDEPLASDEEYDALIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               L+++W++ED+  F     R W K+      F +EPK DG  + + Y+KG+ V  A 
Sbjct: 74  ----LKRMWSMEDV--FDESELRAWAKRARCEENFFIEPKFDGASLNLLYDKGRLVSGAT 127

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GED++  +  I  IP+  ++N  E IE+RGEV I K+DF  +N++   + +  +
Sbjct: 128 RGDGEIGEDITLNVLEIDNIPK--TINYKEKIEIRGEVVILKDDFEKINEKRARLNQSLF 185

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAASG LR+L+ T IT  R L F+  G+G+ +  F K   E++Q +R LGF  ++ 
Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           ++       ++  YNE+ S+R   P  +DG+V +VD+ +L K+LG   + P++M + KF 
Sbjct: 244 IKLCANLDEVLKAYNELLSLRDKKPMMMDGMVVRVDDLALCKELGHTVKFPKFMAAFKFP 303

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I  L         
Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNFDEIARLGVC------ 357

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
                + D V V R+G+VIPK+  +    R+        P+ CP C S ++ +       
Sbjct: 358 -----INDEVSVIRSGDVIPKITKVF-KIRNNLRTKIIKPTVCPECLSELLDE------- 404

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             A  +C   L C A+ +  + HFVS+   NI+GLG+  ++  FK +
Sbjct: 405 -GAFLKCQ-NLDCKARLVNSIIHFVSKKCLNIDGLGENIVELLFKEK 449


>gi|284031885|ref|YP_003381816.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
 gi|283811178|gb|ADB33017.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
          Length = 671

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 210/726 (28%), Positives = 347/726 (47%), Gaps = 85/726 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + + +L  +I    D YY+   P + D+EYDA++    A+  A P+LA   DPN PL+++
Sbjct: 12  ERIETLADQIVQLRDAYYR-GAPAVADAEYDAIEDELRALIAAHPELA--PDPN-PLDQV 67

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G    L    V HS P LSLEK    E +  F  R   F  +         + PK+DG  
Sbjct: 68  GAPAVLHA-PVRHSRPMLSLEKATRPEQVEAFFNR---FPGRS------VVVMPKLDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT-IPRVLSLNIPEIIEVRGEVYISKND 197
           + + YE G+   A  RGDG +G+DV+  +RA+   +P    ++ P  +EVRGE  + ++ 
Sbjct: 118 LALVYEDGQLARAITRGDGTTGDDVTPLVRALADGVP--AKIDAPGRVEVRGEAVMLRST 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A N    A   KP  NPRNAA+G LR  +P  +  R L F    L    +       +
Sbjct: 176 FAAYN---AAHPDKPLINPRNAAAGTLRAKDPATVAERRLQFLAFDLHTDPD---STDSD 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           + + +R LGF V + +R  +      +    ++  R+ L YD+DG V ++ +       G
Sbjct: 230 LDRALRTLGFAVAD-MRHCDDAAAAQAVITTIEQQRNDLDYDLDGAVLRLADRDAFAAAG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
            R+ SPR  +++KFA ++ +T L D+   +G+TG + PVA LEPV +GG  +T ATL N+
Sbjct: 289 TRSSSPRGALAYKFAAEEKTTVLADVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLANQ 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFPSFCP 435
           + I+            R I++GD VLV+RAG+VIP V  ++   R   A Q    P+ CP
Sbjct: 349 EVIR-----------ARGIKIGDTVLVRRAGDVIPFVAGVLDASRRTGAEQDIVPPTNCP 397

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C   +    N +  +L     CT  ++C AQ + RL H+ SR A +I+ +G   ++   
Sbjct: 398 SCGQPLTEQGNSR--ELF----CT-NVSCPAQTVRRLIHWASRAAADIDAIGGVWIERLA 450

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +    A  +  P+D + L + +     +I      G+VS   + +SI+  R + L R + 
Sbjct: 451 E----AGILEHPSDFYHLTKEKLLEFDRI------GEVSAARMIESIDASRQVGLRRALI 500

Query: 556 SLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            L +       A  L +  + S +  A                L+ V  +G  +A ++VE
Sbjct: 501 GLAVPMASEGTAARLCRAGFGSLEEVADAGEE----------GLVAVEDIGPKVAASLVE 550

Query: 615 FYQNPR--------NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL------QK 660
                R           +++ L +++ P +        + +  K +V TG +      +K
Sbjct: 551 HLSRLRPELERLRAAGVSLDVLEEDLPPVVA-----AGAPLAGKTVVVTGAISDPRSGEK 605

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R   Q      GA +++ +S  TD +I G + G +KL KA++LGV+++++ +    L 
Sbjct: 606 VARPAFQRLCESAGATIASSVSASTDYLITGADVGAAKLTKAEKLGVEVVDQSEIWSQLF 665

Query: 720 QYNTTL 725
               TL
Sbjct: 666 AAGITL 671


>gi|166711580|ref|ZP_02242787.1| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 590

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 181/608 (29%), Positives = 292/608 (48%), Gaps = 163/608 (26%)

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ML ++R  GFPV++ V       G+++YY  +   R  LP+DIDG+VYK+D+ + Q+++G
Sbjct: 1   MLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKLDDLAGQREMG 60

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN 
Sbjct: 61  FVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNA 120

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  LD           +RVGD V+V+RAG+VIP+V  ++ ++R P  QP+  P+ CP+
Sbjct: 121 DQIARLD-----------VRVGDTVIVRRAGDVIPEVAAVVADQRPPATQPWQMPTQCPV 169

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL----- 491
           C S +VR+     G+  A  RC+G L C AQ+ E  +HFVSR A +++GLG++ +     
Sbjct: 170 CGSEIVRE----EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVD 223

Query: 492 --------DFFFKSEDPAFSIRIPADI-----FTLQRRQQTST---TKIE-NILGFG--- 531
                   D +  + D    +R+ + +     F  + R+  ++    ++E  ++G G   
Sbjct: 224 SGVVQGVADLYLLTVDQLLQLRMISTVESPHAFLREAREHLASGAYAQLEATVVGIGVDL 283

Query: 532 ----DVSVT--------------------------NLYDSINKRRNISLERFIFSLGI-- 559
               +VS T                          NL ++I   R+ +LERF+F+LGI  
Sbjct: 284 AGEREVSQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEH 343

Query: 560 -------------------RH-----------VGAEIARSLAKYY--------------- 574
                              RH           +G E+ARSL  ++               
Sbjct: 344 VGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQPGNQKAIDHLLAR 403

Query: 575 -----------------LSYQNFAQEI-----------------NNIIAHNNDDWLSLIR 600
                            LS  N  +++                  +I A  N     L+ 
Sbjct: 404 KVRIGDTHPPSPKLRGELSLANLLEDLEIPKVTPIRAAQIAAAFGSIDALRNGGPEPLVE 463

Query: 601 VPLVGDIIAQAIVEFYQNPRN-ICAVEA-----LLKEVSPSIGRHEKNVSSEIENKKLVF 654
              V   +A+++  +   P N   AV A      L  + P  G  +   +  ++ + +V 
Sbjct: 464 AG-VPQSVAESLATWLLVPANDTLAVNAQKKLSALLAMMPEAGEEK---TGPLDGQTVVI 519

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + 
Sbjct: 520 TGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDETRL 579

Query: 715 LFLLQQYN 722
           L  L ++ 
Sbjct: 580 LAFLGEHG 587


>gi|296128966|ref|YP_003636216.1| DNA ligase, NAD-dependent [Cellulomonas flavigena DSM 20109]
 gi|296020781|gb|ADG74017.1| DNA ligase, NAD-dependent [Cellulomonas flavigena DSM 20109]
          Length = 824

 Score =  264 bits (674), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 163/484 (33%), Positives = 250/484 (51%), Gaps = 32/484 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R   ++L ++I      YY    P   D+ YD   R  + +    P L     P+ P 
Sbjct: 16  EVRHRWTALAEQIRADQFAYYVRDAPSSSDAAYDERMRELERLEDEHPGL---RTPDSPT 72

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG  +     V H    LSL+  ++ EDL  +  R+ R  +      + +  E KID
Sbjct: 73  QQVGGTFSTEFTAVDHVERMLSLDNAFSREDLVAWAERVQRDLEST--VPVEYLCELKID 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVRGEVY 192
           G  I + YEKG+ V AA RGDG +GEDV+  +R I TIP VL  +    P++IE+RGEV+
Sbjct: 131 GLAIALLYEKGRLVRAATRGDGRTGEDVTLNVRTISTIPDVLGGDPATHPDVIEIRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
           +  + F ALN+  +A GR P+ANPRNAA+G LR+ +P     R L  + HG+G  +    
Sbjct: 191 LPVDAFRALNEAQVAAGRAPFANPRNAAAGSLRQKDPRVTAARPLRMYAHGIGALTWGDG 250

Query: 252 KG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           +G     Q ++   +   G P +   R   +   +          R  + ++IDG+V KV
Sbjct: 251 RGTGIDRQSQVYDLLAGWGVPTSTHTRVVGSLDEVWDRVAHFGEHRHDVEHEIDGVVVKV 310

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ++LG  +R+PRW I++K+  ++ +TRLL I++ IGRTG  TP A +EPV + G+
Sbjct: 311 DDIALQRRLGATSRAPRWAIAYKYPPEEVNTRLLAIELGIGRTGRATPFAVMEPVLVAGS 370

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN+D +K                  D V++++AG+VIP++V         D  
Sbjct: 371 TVRQATLHNQDVVKVKGVRVG-----------DMVVLRKAGDVIPEIVGPAPQAPDDDVP 419

Query: 427 --PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              +  P+ CP C +  +R +      L    RC     C AQ   RL+H  SR AF+IE
Sbjct: 420 RVEWHMPADCPECGT-PLRPMREGDVDL----RCPNAQGCPAQVRGRLEHIGSRGAFDIE 474

Query: 485 GLGK 488
            LG+
Sbjct: 475 VLGE 478



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 44/220 (20%)

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ--------------NFAQ 582
            L D ++  +   L R I +L IRHVG   AR+LA+ + S                +  Q
Sbjct: 588 TLLDQLDLAKTKELWRAIVALSIRHVGPTAARALAQEFGSMAALRAVVDPTARGAVDAPQ 647

Query: 583 EINNIIAHNNDDWLSLIR------------------VPLVGDIIAQAIVEFYQNP--RNI 622
           E  +  A  +D     I                   V  VG  IA+++++++  P  R I
Sbjct: 648 EAVDGGAVADDAVEGSIADEDGAPAADAAAVARLAGVEGVGPTIARSLLDWFAEPWHREI 707

Query: 623 ----CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                A   ++++        +++    +E   +V TG+L++  R  A+E +   G   S
Sbjct: 708 VDRWAAAGVVMQDAV------DESTPRTLEGVTVVVTGSLERFSRDGAKEAILGRGGKAS 761

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +SRKTD ++VG+N GSK  KA++LG++I++E  F  LL
Sbjct: 762 GSVSRKTDFVVVGENAGSKETKARELGLRILDEAGFEALL 801


>gi|239945456|ref|ZP_04697393.1| putative NAD-dependent DNA ligase [Streptomyces roseosporus NRRL
           15998]
 gi|239991920|ref|ZP_04712584.1| putative NAD-dependent DNA ligase [Streptomyces roseosporus NRRL
           11379]
          Length = 702

 Score =  263 bits (673), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 202/709 (28%), Positives = 326/709 (45%), Gaps = 77/709 (10%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D  YD L R   A     P+   +  P G   K+ G    ++  V H++P LSL+ +++ 
Sbjct: 32  DDAYDRLARGIAAYEADHPEEVLAASPTG---KVAG--GAAVGDVPHTVPMLSLDNVFSA 86

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164
           E   +F T      ++       +++EPK+DG  +  RY  G+F     RGDG +GEDVS
Sbjct: 87  E---QFATWTASLERRIGRPVTAWSVEPKLDGLAVAARYRDGRFERLITRGDGTAGEDVS 143

Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224
               A+  +P  L+   P  IEVRGE+ ++ + F   N      G  P+ANPRN A+G L
Sbjct: 144 HAAGAVVGLPERLAE--PVTIEVRGEILMTNDQFDQGNAIRTEHGGAPFANPRNGAAGTL 201

Query: 225 R---RLNPTDITRYLNFFVHGL------GKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQ 274
           R   R    + T    FF +G       G+  E  A+  + E+L  +  LG     G   
Sbjct: 202 RAKDRAYRVETT----FFAYGALPLPDSGELGETLAELPHSEILSYVAGLGVHTAAGTDV 257

Query: 275 ANTFHGIV----SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
           A      V    +  + +  +R+ LP+ IDG+V K D  + Q++ G   R+PRW I++K 
Sbjct: 258 APVLAATVEEVQARVDAIGPLRAALPFGIDGIVIKADLAADQREAGSGTRAPRWAIAYKL 317

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
              +  TRL+ ++  +GRTGI+ P A LEPV I G+ +  ATLHN            + R
Sbjct: 318 PAVEKITRLVSVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHN---------PADITR 368

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
             RD+R+GD+V+V +AG++IP++   +V+ R  D  P  FP  CP C S +  D + +  
Sbjct: 369 --RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIDFPESCPQCGSAI--DTSEQR- 423

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
                 RCT G  C  + +  + +   RD  +IEGLG  ++         A  +   AD+
Sbjct: 424 -----WRCTRGRNC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADFADL 472

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           FTL+R Q  +  ++      G+ S  NL  +I   R   L R   +LG+R  G  ++R +
Sbjct: 473 FTLEREQLLALDRM------GETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSRRI 526

Query: 571 AKYYLSYQNFA-------QEINNIIAHN--NDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           A+Y+ +            Q ++ I                PL+  ++A  +         
Sbjct: 527 ARYFATMDRIVAADVETLQRVDGIGKEKAAAVVAELAELAPLIAKLVAAGVNMTEPGATP 586

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTG----TLQKIQRHKAQEYVTQ 672
                   +  +                  +    +V TG     L+K+ R++  E + +
Sbjct: 587 PPEPGTEEEAAAAGADAEAGGEGGTGPTLPLAGMTVVVTGAMTGALEKLSRNQMNELIER 646

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            G   S+ +S++T +++ GD  GSK  KA+ LGV+I   E+F  L+  +
Sbjct: 647 AGGKSSSSVSKRTSLLVAGDKAGSKRTKAEDLGVRIAVPEEFAELVGAF 695


>gi|291448912|ref|ZP_06588302.1| DNA ligase [Streptomyces roseosporus NRRL 15998]
 gi|291351859|gb|EFE78763.1| DNA ligase [Streptomyces roseosporus NRRL 15998]
          Length = 710

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 202/709 (28%), Positives = 325/709 (45%), Gaps = 77/709 (10%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D  YD L R   A     P+   +  P G   K+ G    ++  V H++P LSL+ +++ 
Sbjct: 40  DDAYDRLARGIAAYEADHPEEVLAASPTG---KVAG--GAAVGDVPHTVPMLSLDNVFSA 94

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164
           E   +F T      ++       +++EPK+DG  +  RY  G+F     RGDG +GEDVS
Sbjct: 95  E---QFATWTASLERRIGRPVTAWSVEPKLDGLAVAARYRDGRFERLITRGDGTAGEDVS 151

Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224
               A+  +P  L+   P  IEVRGE+ ++ + F   N      G  P+ANPRN A+G L
Sbjct: 152 HAAGAVVGLPERLAE--PVTIEVRGEILMTNDQFDQGNAIRTEHGGAPFANPRNGAAGTL 209

Query: 225 R---RLNPTDITRYLNFFVHGL------GKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQ 274
           R   R    + T    FF +G       G+  E  A+  + E+L  +  LG     G   
Sbjct: 210 RAKDRAYRVETT----FFAYGALPLPDSGELGETLAELPHSEILSYVAGLGVHTAAGTDV 265

Query: 275 ANTFHGIV----SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
           A      V    +  + +  +R+ LP+ IDG+V K D  + Q++ G   R+PRW I++K 
Sbjct: 266 APVLAATVEEVQARVDAIGPLRAALPFGIDGIVIKADLAADQREAGSGTRAPRWAIAYKL 325

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
              +  TRL+ ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I           
Sbjct: 326 PAVEKITRLVSVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADIT---------- 375

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
             RD+R+GD+V+V +AG++IP++   +V+ R  D  P  FP  CP C S +  D + +  
Sbjct: 376 -RRDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIDFPESCPQCGSAI--DTSEQR- 431

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
                 RCT G  C  + +  + +   RD  +IEGLG  ++         A  +   AD+
Sbjct: 432 -----WRCTRGRNC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADFADL 480

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           FTL+R Q  +  ++      G+ S  NL  +I   R   L R   +LG+R  G  ++R +
Sbjct: 481 FTLEREQLLALDRM------GETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSRRI 534

Query: 571 AKYYLSYQNFA-------QEINNIIAHN--NDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           A+Y+ +            Q ++ I                PL+  ++A  +         
Sbjct: 535 ARYFATMDRIVAADVETLQRVDGIGKEKAAAVVAELAELAPLIAKLVAAGVNMTEPGATP 594

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTG----TLQKIQRHKAQEYVTQ 672
                   +  +                  +    +V TG     L+K+ R++  E + +
Sbjct: 595 PPEPGTEEEAAAAGADAEAGGEGGTGPTLPLAGMTVVVTGAMTGALEKLSRNQMNELIER 654

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            G   S+ +S++T +++ GD  GSK  KA+ LGV+I   E+F  L+  +
Sbjct: 655 AGGKSSSSVSKRTSLLVAGDKAGSKRTKAEDLGVRIAVPEEFAELVGAF 703


>gi|229825369|ref|ZP_04451438.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC
           49176]
 gi|229790373|gb|EEP26487.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC
           49176]
          Length = 664

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 218/705 (30%), Positives = 351/705 (49%), Gaps = 81/705 (11%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK-IGGEMNLSLFKVTHS 92
            YY  S  I+ ++EYD L    +A+ +    +       G L K +G E+  SL K  H 
Sbjct: 23  AYYAESTEIMSNAEYDKLYDELEALENETGIVLA-----GSLTKKVGYEVLSSLPKKAHK 77

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
            P LSL K  ++ +L  F+          D   I      K+DG  I + YE G+ V A 
Sbjct: 78  EPRLSLSKTKDVGELASFLG---------DKEGILMW---KLDGLTIVLTYENGELVEAL 125

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            RG+G  GE V+   R    IP V+       + VRGE  I  +DF  +N+E+  V  K 
Sbjct: 126 TRGNGEIGEVVTENARFFENIPLVIPYKGS--LMVRGEAIIKYSDFNRINEEITDVAEK- 182

Query: 213 YANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
           Y NPRN  SG +R+L+ T++T  R +NF V+   +  E F K + E L  +  LGF V +
Sbjct: 183 YKNPRNLCSGSVRQLS-TEVTAKRNVNFIVYEDLEGGEKF-KTREEELNYLESLGFTVVD 240

Query: 271 G--VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
              V + N    +  Y N +K+  S LP D  GLV + ++ +    LG  ++ PR  I+ 
Sbjct: 241 HPLVNRDNLEKEVREYENRIKT--SDLPSD--GLVLQFNDIAYGNSLGRTSKFPRHSIAF 296

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K+ ++ A T L +I+    RTG++ PVA  + V + G  +T A++HN   ++ L      
Sbjct: 297 KWKDETAETTLREIEWSASRTGLINPVAIFDAVELEGTTVTRASVHNVSIMRSL------ 350

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
                 + VGDR+ V +A  +IP+++     E   ++     P+ CP+C  +   +L  +
Sbjct: 351 -----KLGVGDRIKVYKANMIIPQIL-----ENLTESNAEEVPTVCPVCGGKT--ELKDE 398

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
            G  V    CT    C A++L+ L HFVSRDA NI GL +  L+ F         I   +
Sbjct: 399 EG--VQTLYCTNP-DCMAKRLKLLTHFVSRDAMNIAGLSEMTLEKFVAEN----MIHELS 451

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D+F L   ++    KI  + GFG+ S  NL +S++K R  +  R ++SLGI ++G   A+
Sbjct: 452 DVFKLANHKE----KIVTMEGFGERSYNNLIESLDKARETTAVRILYSLGIANIGLATAK 507

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            + +Y      F  + + II    ++   L ++  +G+++A+   E++    NI  +E L
Sbjct: 508 LICRY------FNNDFDKIIKAKEEE---LTQIDGIGEVMAKVFAEYFNKDENIKTLEHL 558

Query: 629 LKEVS-PSIGRHEKN------VSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAI 680
           L EV       +++N      V++ I     V TG ++K + R +  E++   G  V+  
Sbjct: 559 LAEVHIEKSAENDQNTEGDDEVNNAIAGLTFVITGDVEKFKNRRELSEFIESKGGKVTGS 618

Query: 681 LSRKTDIIIVGD---NPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++ KT+ +I  D   N G K +KA++LGVKI++E +FL L+   N
Sbjct: 619 VTGKTNYLINNDVTSNSG-KNKKAKELGVKIISENEFLELVGGNN 662


>gi|300785073|ref|YP_003765364.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
 gi|299794587|gb|ADJ44962.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
          Length = 663

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 208/719 (28%), Positives = 347/719 (48%), Gaps = 89/719 (12%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++ +  L   I+   D YY+ S P++ D+EYDA++    ++  A P+   + DPN PL+
Sbjct: 3   AQERIPELADRITVLRDAYYRGS-PLVADAEYDAVEDELRSLIEAHPEF--TPDPN-PLD 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G    L    + HS P LSLEK    E +  F  R                + PK+DG
Sbjct: 59  QVGAPAVLHA-PIRHSRPMLSLEKATKPEQVEAFFDRF---------PGQPVVVMPKLDG 108

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT-IPRVLSLNIPEIIEVRGEVYISK 195
             + + YE G+   A  RGDG +G+DV+  +RA+   IP    +  P  +EVRGE  + +
Sbjct: 109 LSLAVVYENGRLARAVTRGDGTTGDDVTKLVRALTDGIPE--QVEAPGRVEVRGEAVMLR 166

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
           + F A N    A   KP  NPRNAA+G LR  +P  +  R L FF   L    +     +
Sbjct: 167 STFAAYN---TAHPDKPLINPRNAAAGTLRAKDPATVAERRLRFFAFDLYTEPD---SAE 220

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            ++   +  LGF   +  R A+      S   E++  R+ L YD+DG V ++        
Sbjct: 221 TDLGSALHTLGFTAADMRRCADAAEA-QSVIGEIEQQRNELDYDLDGAVLRLASRDAYAA 279

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
            G R+ SPR  ++ KFA ++ +T L D+   +G+TG + PVA LEPV +GG  +T ATL 
Sbjct: 280 AGTRSSSPRGALAFKFAAEEKTTVLSDVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLA 339

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERHPDAQPFSFPSF 433
           N++ I+            R I++GD VLV+RAG+VIP V  ++  ++R    +    P  
Sbjct: 340 NQEVIR-----------ARGIKIGDTVLVRRAGDVIPFVAGVLDASKRTGAEREIVPPEV 388

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   +    N +  +L     CT  ++C AQ + RL H+ SR A +I+ +G   ++ 
Sbjct: 389 CPSCGQPLTEQGNSR--ELF----CT-NVSCPAQTVRRLIHWASRAAADIDAIGGVWIER 441

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISL 550
             +    A  +  P+D + L +         E +L F   G+VS T + +SI+  R + L
Sbjct: 442 LAE----AGILENPSDFYGLTK---------EKLLEFDRIGEVSATRMIESIDASRGVGL 488

Query: 551 ERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDII 608
            R +  L I       A  L +  + S ++ A+  ++ ++A  +           +G  +
Sbjct: 489 RRALIGLAIPMASEGTAARLCRAGFGSLEDVAEAGVDGLVAVED-----------IGPKV 537

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTL---- 658
           A +++E     R        L++   S+   E+++       + +  K +V TG +    
Sbjct: 538 AASLIEHLTRLRPEL---ERLRKAGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPR 594

Query: 659 --QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
             +K+ R   Q    + GA  +  +S  TD++I G + G SKL KA++ GV+++++ + 
Sbjct: 595 SGEKVPRPTFQRLCERAGATTATSVSASTDLLITGADVGASKLTKAEKHGVEVVDQGEI 653


>gi|317499031|ref|ZP_07957312.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893681|gb|EFV15882.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 651

 Score =  260 bits (664), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 211/700 (30%), Positives = 341/700 (48%), Gaps = 85/700 (12%)

Query: 34  CYYQYSKPIILDSEYD-------ALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
            YYQ +K ++ + EYD        L+++ + +             N P   +G E+   L
Sbjct: 20  AYYQQNKEVMSNLEYDKMYDELLELEKKTNTVL-----------SNSPTIHVGYELMTVL 68

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
            K  H  P LSL+K    + L  ++            N     L  K+DG  I + YE G
Sbjct: 69  EKEAHPSPMLSLDKTKEPDQLATWL------------NGQEGILSWKLDGLTIVLTYEHG 116

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
           K + A  RG+G  GE V+   R    +PR ++     +I  RGE  I  +DF  +N+E+ 
Sbjct: 117 KLLKAVTRGNGEVGEVVTNNARVFENVPRRIAYQGTLVI--RGEAIIPYSDFYKMNEEIE 174

Query: 207 AVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM-LQKMRC 263
            V  + Y NPRN  SG +R+LN  +IT  R+++F+   +     +     +E  L  +  
Sbjct: 175 DVDSQ-YKNPRNLCSGSVRQLN-NEITAKRHVHFYAFSVSDVEGMDFDNSFEKKLDWVAS 232

Query: 264 LGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
           LGF V   +R   +T  G +  +++ K  +  LP D  GLV   D+ +  K LG  A+ P
Sbjct: 233 LGFDVVEHIRVTEDTIRGEIEKFSK-KIEQFDLPSD--GLVLVYDDLAYGKSLGRTAKFP 289

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           R  I+ K+A++ A T L +I+    RTG++ PVA  EPV + G  ++ A+LHN   ++ L
Sbjct: 290 RDSIAFKWADETAETTLTEIEWSPSRTGLINPVAIFEPVELEGTTVSRASLHNISVMEEL 349

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV- 441
                       + +GD ++V +A  +IP++      E    +     P  CP C     
Sbjct: 350 -----------QLGIGDEIVVYKANMIIPQLA-----ENKTKSGNIEIPHTCPACGGETK 393

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           + D N      +    CT    CSA++++   HFVSRDA N++GL +  L    K  D  
Sbjct: 394 IEDENG-----IRTLVCTNEF-CSAKKIKSFSHFVSRDAMNVDGLSEATLQ---KMIDVG 444

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
               I  D+FTL+  ++    +I  + GFG+ S  NL ++IN  +  +L  FI+SLGI +
Sbjct: 445 LLNEI-YDLFTLKDHKE----EILELEGFGEKSYQNLINAINDSKQPALANFIYSLGIPN 499

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   A+ + K+      F ++ N I   + +D+   I +  +G +IA+A+V ++  P N
Sbjct: 500 VGLSNAKLICKH------FKEDFNAIREADAEDF---IAIDQIGPMIAEAMVSYFHTPHN 550

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAI 680
              +E LL+ V     + E      +E K  V TG+L     R + +E + Q+G  V+  
Sbjct: 551 QKILEQLLQYVQFE-KKEESKTEQILEGKTFVVTGSLDHFDNRKQLKEEIEQMGGKVTGS 609

Query: 681 LSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S+KTD +I  D  +  SK +KA +L + I++EE FL L+
Sbjct: 610 VSKKTDYLINNDKMSQSSKNKKAMELNIPILSEEDFLNLI 649


>gi|257069044|ref|YP_003155299.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810]
 gi|256559862|gb|ACU85709.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810]
          Length = 871

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 166/520 (31%), Positives = 259/520 (49%), Gaps = 68/520 (13%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A++ +++L   I      YY++  P + D+EYD L++   A+  A P LA +ED   P
Sbjct: 19  ETAQQRIAALTARIEQARVDYYEHDAPTMADAEYDELEKELRALEEANPQLA-AED--SP 75

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG     L  + H+    SL+ ++++E+LR++          +    + +  E KI
Sbjct: 76  TRTVGGAAAAGLPTIDHAERMQSLDNVFSLEELREWCAHAA----AELGGEVRYLTELKI 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYI 193
           DG  I +RYE G+ V AA RGDG +GEDV+     I  IP+ LS    P ++EVRGEV++
Sbjct: 132 DGLAINLRYEHGELVTAATRGDGRTGEDVTVNALQIDGIPQRLSGSGHPALVEVRGEVFM 191

Query: 194 SKNDFLALNDEMIAV------------------GRKP----------------YANPRNA 219
              DF  LND  + +                  GR+P                +ANPRN 
Sbjct: 192 PTADFERLNDLQVELRERAVAESRTRWESRQGSGRRPFDEQRESLAAARRFPTFANPRNT 251

Query: 220 ASGILR----------RLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
           A+G LR          R         L   VHGLG   +     Q EM + +   G P +
Sbjct: 252 AAGGLRQQLDKKEGLEREAGEARLAALRLTVHGLGAWPDPPVGSQSEMYELLASWGLPTS 311

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
             +   ++   + +Y       R  L ++IDG+V KVD F+ Q+ LG  +R+PRW I+ K
Sbjct: 312 RYMDVVDSIDEVAAYVEHHGEHRHDLEHEIDGIVVKVDSFAQQRALGSTSRAPRWAIAVK 371

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           F  ++ +T+LLDI +Q+GRTG +TP   +EPV + G+ +  ATLHN+      D    V 
Sbjct: 372 FPPEEVTTKLLDIQVQVGRTGRVTPFGVMEPVTVAGSTVEKATLHNQ-----FD----VE 422

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
           R G  + +GD +++++AG+VIP+++  + + R    +PF  P+ CP C + +  +     
Sbjct: 423 RKG--VLIGDTIVLRKAGDVIPEILAPVESLRDGSERPFVMPAQCPACGTEIRPEREGDK 480

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
                  RC     C AQ   R++H  SR AF+IE LG++
Sbjct: 481 D-----WRCPNQRDCPAQVTGRVEHAGSRGAFDIESLGEE 515



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 10/186 (5%)

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           S   L   + K ++  L R + +L IRHVG   ARSLA  Y S     +     ++  + 
Sbjct: 656 STEVLISELEKAKSQPLWRVLVALSIRHVGPTAARSLATAYGSMDAIREASVEQLSDTDG 715

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
                     VG+IIA+A+VE++    +   V+   +         E+  +  +E   +V
Sbjct: 716 ----------VGEIIAEAVVEWFAVDWHRELVDGWARSGVRMADEVEEGFTKTLEGLTVV 765

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG L+   R  A+E +   G   S  +S+KTD ++VG+N GSK  KA++LG++I++E  
Sbjct: 766 VTGGLEGFTRDGAKEAIITRGGKASGSVSKKTDFVVVGENAGSKETKARELGLRILDEAG 825

Query: 714 FLFLLQ 719
           F+ LL+
Sbjct: 826 FVALLE 831


>gi|256377071|ref|YP_003100731.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
 gi|255921374|gb|ACU36885.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
          Length = 674

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 206/718 (28%), Positives = 344/718 (47%), Gaps = 84/718 (11%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   +    D YY+ S P++ D+EYDA +    ++  A P+L  + DPN PL+
Sbjct: 11  AEERIRDLADRVVSLRDAYYRGS-PLVADAEYDATEDELRSLIAANPEL--TPDPN-PLD 66

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G    L    V H+ P LSLEK    E +  F+ R   F  +         + PK+DG
Sbjct: 67  QVGAPAVLHA-PVRHARPMLSLEKATQPEQVAAFLDR---FPGQP------VVVMPKLDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRA----IPTIPRVLSLNIPEIIEVRGEVY 192
             +++ YE G  + A  RGDG +G+DV+  +RA    +PT      +  P  +EVRGE  
Sbjct: 117 LSLSLVYEGGALLRAVTRGDGTTGDDVTPLVRALADGVPT-----RVPAPGRVEVRGEAV 171

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + ++ F A N+   A   KP  NPRNAA+G LR  +P  +  R L F    L   +E  A
Sbjct: 172 MLRSTFTAYNE---AHPDKPLINPRNAAAGTLRAKDPATVAGRRLRFLAFELDTDAEAGA 228

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               ++ + +R LGF   + +R A            +++ R+ L YD+DG V ++ +   
Sbjct: 229 GVGADLEEGLRALGFTPAD-MRHAADAEAAQRVITGIETGRADLDYDLDGAVLRLADRRA 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
               G R+ SPR  ++ KFA ++ +T L+D+   +G+TG + PVA LEPV +GG  +T A
Sbjct: 288 YAAAGTRSNSPRGALAFKFAAEEKTTLLVDVVWDVGKTGKVVPVAHLEPVFVGGTTVTRA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERHPDAQPFSF 430
           TL N++ IK            R + VGD VLV+RAG+VIP V  ++   +R  + +    
Sbjct: 348 TLANQEVIK-----------ARGVMVGDTVLVRRAGDVIPFVAGVLDAAKRTGEEREIVP 396

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP C   +    N +  +L     CT  ++C+AQ + RL H+ SR A +I+ +G   
Sbjct: 397 PSTCPSCDQPLTEQGNSR--ELF----CT-NVSCAAQTVRRLIHWASRAAADIDAIGPVW 449

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F +    A  +  P+D + L + Q     ++      G+ S T + +SI   R + L
Sbjct: 450 IERFAE----AGLLEHPSDFYLLTKEQLLEFERV------GETSATRMIESIAASRAVGL 499

Query: 551 ERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            R +    +       A  L +  + S +  A                L+ V  +G  +A
Sbjct: 500 RRALIGFAVPMASEGTATRLCRAGFGSLEEVADAGEE----------RLVEVEDIGPKVA 549

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTL----- 658
            ++ E     R        L++   S+   ++++       + +  K +V TG +     
Sbjct: 550 ASLTEHLARLRPEL---TRLRQRGVSLDVRDEDLPPVVASDAPLAGKTVVITGAISDPRS 606

Query: 659 -QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQF 714
            +K+ R   Q    + GA  ++ +S  TD++I G   G+ K  KA++LGV ++++ + 
Sbjct: 607 GEKVARPAFQRLCEKAGATTASSVSANTDMLITGAEVGAGKTAKAEKLGVAVVDQGEI 664


>gi|257484998|ref|ZP_05639039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 572

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/404 (36%), Positives = 222/404 (54%), Gaps = 37/404 (9%)

Query: 234 RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           R L F  +GLG+TS   A     +L+ ++  G PV+  ++ AN     + YY ++   R 
Sbjct: 11  RPLEFCCYGLGQTSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRL 70

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
           TL Y+IDG+V+KV+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +T
Sbjct: 71  TLSYEIDGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVT 130

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVARL+PV + G ++ NATLHN D +  L            + +GD V+++RAG+VIP+V
Sbjct: 131 PVARLKPVKVAGVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQV 179

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQ 467
           V ++   R  +A+    P  CP+C S V R   +    GK      A +RC G LAC AQ
Sbjct: 180 VQVVAERRPENARAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQ 239

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
             + + H+VSR A +IEGLG + ++     +     I  PAD++ L+  Q      I ++
Sbjct: 240 LKQAIIHYVSRRAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDL 289

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            GF ++S   L  +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +
Sbjct: 290 EGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV 349

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + +          +P VG  +A  I  F+++  N   ++ALL E
Sbjct: 350 LTY----------LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 383



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  +            + A  + DWL + +   + +
Sbjct: 401 STTLEGLIDKLHIPSVGPGAAQKLADRF----------GTLEAIISADWLDMRQT--LPE 448

Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+ +  +     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 449 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 504

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 505 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 564

Query: 719 QQYNTTL 725
            +   T+
Sbjct: 565 TELGVTV 571


>gi|154498647|ref|ZP_02037025.1| hypothetical protein BACCAP_02637 [Bacteroides capillosus ATCC
           29799]
 gi|150272386|gb|EDM99580.1| hypothetical protein BACCAP_02637 [Bacteroides capillosus ATCC
           29799]
          Length = 656

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 207/722 (28%), Positives = 332/722 (45%), Gaps = 93/722 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q  + +  L Q I   D+ YY+Y  PI+ D +YD L     A+      +  S     P 
Sbjct: 2   QNLERMRELIQTIKEADEAYYKYDAPIMADLDYDRLYDELAALERETGTILSSS----PT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++ GE+  SL  V HS P LS +K  ++ D+ K++                  L  K+D
Sbjct: 58  QRVSGEVLESLTAVRHSRPMLSADKCKSVADIHKYL------------GGHEAVLSWKLD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + +RYE GK V A  RGDG  GEDV+  +R +  +P V+    P  +EVRGE  IS 
Sbjct: 106 GLTLVLRYENGKLVQAITRGDGLQGEDVTHTVRIMKNVPLVIPCKEP--LEVRGEGVISW 163

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
            +F ALN  +     +PYA+PRN A+G +R+LN  ++  R L+F    L  +  +    +
Sbjct: 164 KEFHALNGTL----DEPYAHPRNLAAGSVRKLNAEEVRERGLSFMAFDL-ISDNLGGSTK 218

Query: 255 YEMLQKMRCLGFPV-----------NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           +E L+ +  +GF                VRQA  F+    Y            Y  DGL+
Sbjct: 219 WETLRFLAQMGFTTVGYSILAAGASEEAVRQAMDFYQPKEY-----------AYPTDGLI 267

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           ++ ++ +  + LG        M + K+ + +  T+   +++   RTG+++  A  + V I
Sbjct: 268 FEFNDLAYGRSLGATGHHENRMTAFKWPDTRYETKFRRLEVATTRTGMISLTAAFDDVVI 327

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  + +A LHN D    L            +  GD + V +A  +IP++ +   N+   
Sbjct: 328 DGTTVNHAYLHNLDNFTRLA-----------LGPGDTISVYKANMIIPQIAE---NKTKS 373

Query: 424 DAQPFSFPSFCPICQSR-VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              P   P  CP C S  VVR  +  T +L   +      AC A+ + +  HF S+    
Sbjct: 374 GGCPL--PDVCPCCGSTLVVRQSSGGTRQLYCENE-----ACPARLVRKFVHFCSKTRME 426

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GL +Q L  F +       ++   D++ L+R ++    +I    GFG+ S   L +++
Sbjct: 427 IKGLDEQTLTTFVQHG----WVKNYGDLYELERHKE----EILKTPGFGEKSFARLQNAV 478

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLA-KYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           ++RR  +L +FI +LGI  VG    R L  K+  S+  F + I         D     ++
Sbjct: 479 DERRTCTLNQFIAALGIPEVGRHAGRILNRKFGGSWDAFERAIL--------DQFDFTQL 530

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTG 656
              G ++   I  +Y +          L  ++      E+    E +N     K +V TG
Sbjct: 531 EDFGQVMNDNIYCWYSDEEEAKLWRPALNHIT---FLKEETTMPEAQNNPFAGKTVVATG 587

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L+   R   Q  +  LGA  ++ +S+KTD +IVG+N GSKL KAQ LGV  + E+QFL 
Sbjct: 588 KLENYTRDGIQMKLLSLGARPASSVSKKTDYLIVGENAGSKLTKAQTLGVTTLTEQQFLQ 647

Query: 717 LL 718
           +L
Sbjct: 648 ML 649


>gi|188576356|ref|YP_001913285.1| DNA ligase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520808|gb|ACD58753.1| DNA ligase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 590

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 177/608 (29%), Positives = 290/608 (47%), Gaps = 163/608 (26%)

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ML ++R  GFPV++ V       G+++YY  +   R  LP+DIDG+VYK+D+ + Q+++G
Sbjct: 1   MLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKLDDLAGQREMG 60

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN 
Sbjct: 61  FVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNA 120

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  LD           +RVGD V+V+RAG+VIP+V  ++ ++RHP  QP+  P+ CP+
Sbjct: 121 DQIARLD-----------VRVGDTVIVRRAGDVIPEVAAVVADQRHPATQPWQMPTQCPV 169

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE------------ 484
           C S +VR+     G+  A  RC+G L C AQ+ E  +HFVSR A +++            
Sbjct: 170 CGSEIVRE----EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVD 223

Query: 485 -GLGKQQLDFFFKSEDPAFSIRI-----PADIFTLQRRQQTST---TKIE-NILGFG-DV 533
            G+ +   D +  + D    +R+         F  + R+  ++    ++E  ++G G D+
Sbjct: 224 SGVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQLEATLVGIGVDL 283

Query: 534 S--------------------------------VTNLYDSINKRRNISLERFIFSLGI-- 559
           +                                  NL ++I   R+ +LERF+F+LGI  
Sbjct: 284 AGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEH 343

Query: 560 -------------------RH-----------VGAEIARSLAKYYLSYQNFAQEINNIIA 589
                              RH           +G E+ARSL  ++    N  + I++++A
Sbjct: 344 VGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFFDQPGN-QKAIDHLLA 402

Query: 590 HNN------------------DDWLSLIRVPLVGDI------------------------ 607
                                 + L  + +P V  I                        
Sbjct: 403 RKVRIGDTHPPSPKLRGELRLANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLV 462

Query: 608 -------IAQAIVEFYQNPRN-ICAVEA-----LLKEVSPSIGRHEKNVSSEIENKKLVF 654
                  +A+++  +   P N   AV+A      L  + P  G  +   +  ++ + +V 
Sbjct: 463 EAGVPQSVAESLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEEK---TGPLDGQTVVI 519

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + 
Sbjct: 520 TGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARL 579

Query: 715 LFLLQQYN 722
           L  L ++ 
Sbjct: 580 LAFLGEHG 587


>gi|167766753|ref|ZP_02438806.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1]
 gi|167711507|gb|EDS22086.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1]
          Length = 651

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 210/702 (29%), Positives = 342/702 (48%), Gaps = 85/702 (12%)

Query: 34  CYYQYSKPIILDSEYD-------ALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
            YYQ +K ++ + EYD        L+++ + +             N P   +G E+  +L
Sbjct: 20  AYYQQNKEVMSNLEYDKMYDELLELEKKTNTVL-----------SNSPTIHVGYELMTAL 68

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
            K  H  P LSL+K    + L  ++            N     L  K+DG  I + YE G
Sbjct: 69  EKEAHPSPMLSLDKTKEPDQLATWL------------NGQEGILSWKLDGLTIVLTYEHG 116

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
           + + A  RG+G  GE V+   R    +PR ++     +I  RGE  I  +DF  +N+E+ 
Sbjct: 117 ELLKAVTRGNGEVGEVVTNNARVFENVPRHIAYQGTLVI--RGEAIIPYSDFYKMNEEIE 174

Query: 207 AVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM-LQKMRC 263
            V  + Y NPRN  SG +R+LN  +IT  R+++F+   +     +     +E  L     
Sbjct: 175 DVDSQ-YKNPRNLCSGSVRQLN-NEITAKRHVHFYAFSVSDVEGMDFDNSFEKKLDWAAS 232

Query: 264 LGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
           LGF V   +R   +T  G +  +++ K  +  LP D  GLV   D  +  K LG  A+ P
Sbjct: 233 LGFDVVEHIRVTEDTIRGEIEKFSK-KIEQFDLPSD--GLVLVYDNLAYGKSLGRTAKFP 289

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           R  I+ K+A++ A T L +I+    RTG++ PVA  EPV + G  ++ A+LHN   ++ L
Sbjct: 290 RDSIAFKWADETAETTLTEIEWSPSRTGLINPVAIFEPVELEGTTVSRASLHNISVMEEL 349

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV- 441
                       + +GD ++V +A  +IP++      E    +     P  CP C     
Sbjct: 350 -----------QLGIGDEIVVYKANMIIPQLA-----ENKTKSGNIEIPHTCPACGGETK 393

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           + D N      +    CT    CSA++++   HFVSRDA N++GL +  L    K  D  
Sbjct: 394 IEDENG-----IRTLVCTNEF-CSAKKIKSFSHFVSRDAMNVDGLSEATLQ---KMIDVG 444

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
               I  D+FTL+  ++    +I  + GFG+ S  NL ++IN  +  +L  FI+SLGI +
Sbjct: 445 LLNEI-YDLFTLKDHKE----EILELEGFGEKSYQNLINAINDSKQPALANFIYSLGIPN 499

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   A+ + K+      F ++ N I   + +D+   I +  +G +IA+A+V ++  P N
Sbjct: 500 VGLSNAKLICKH------FKEDFNAIREADAEDF---IAIDQIGPMIAEAMVSYFHTPHN 550

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAI 680
              +E LL+ V     + E      +E K  V TG+L     R + +E + Q+G  V+  
Sbjct: 551 QKILEQLLQYVQFE-KKEESKTEQILEGKTFVVTGSLDHFDNRKQLKEEIEQMGGKVTGS 609

Query: 681 LSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +S+KTD +I  D  +  SK +KA +L + I++EE FL L+++
Sbjct: 610 VSKKTDYLINNDKMSQSSKNKKAMELNIPILSEEDFLDLIRR 651


>gi|294155884|ref|YP_003560268.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145]
 gi|291600422|gb|ADE19918.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145]
          Length = 657

 Score =  256 bits (655), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 204/697 (29%), Positives = 345/697 (49%), Gaps = 67/697 (9%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           +I  +++ YY   +P + D+EYDAL +    I    P +   + P+     IGG  +   
Sbjct: 15  KIKQYNNEYYNLDQPSVSDAEYDALYKELLEIEKQNPKIINQDSPSQI---IGGFASSKF 71

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
            K TH    LSL+K  + +++ KF   I++    K DN  FF LEPK+DG  I++ YE G
Sbjct: 72  SKYTHQKLMLSLDKATHFDEITKFYNDIFKVI--KTDNKGFF-LEPKVDGLSISLHYENG 128

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
               A  RGDG  GEDVS  +  I  +   ++   P  IE+RGE+Y+SK +F  LN ++ 
Sbjct: 129 ILQRAVTRGDGLVGEDVSENVLQIKEVKHKIAYKKP--IEIRGEIYLSKENFNKLNKKIE 186

Query: 207 AVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
             G K +ANPRNAASG LR+L+   +  R L   ++ L          Q + +  +  LG
Sbjct: 187 DQGLKSFANPRNAASGTLRQLDKNIVRERNLGIVLYELVDPLVHKITSQDQSISFINQLG 246

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           FP     +       I++Y  E   I++ L YD DGLV K ++    K LG  ++ P++ 
Sbjct: 247 FPTQKNNKLLYELDDILNYIEEFGEIKNNLDYDCDGLVIKYNDIEQWKLLGFTSKFPKYA 306

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I++K+  ++A TR+  I I  GRTG +  +A +EPV +  ++++ ATLHN +YI+ L   
Sbjct: 307 IAYKYQVEEAITRINKISISTGRTGKINYLAHVEPVELNQSIVSKATLHNYNYIEEL--- 363

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF--CPICQSRVVR 443
                   ++ +GD V++ +AGE+IPK     V E         FP    C  C+S++  
Sbjct: 364 --------NLNIGDDVVIIKAGEIIPK-----VRELKQKKSIGVFPKLINCLSCKSKLEY 410

Query: 444 -DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
            D N           C     C  + +  L +F S+   +I+G+G + +   +++     
Sbjct: 411 IDDN-------LEQYCLNK-NCQEKIINSLIYFASKPCLDIKGMGDKVVKILYEN---GL 459

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            + I  D F L  ++     K+  +  F +  V NL ++I   +   L + I +LG++++
Sbjct: 460 VLEI-KDFFELHNKRD----KMLQLPSFKEKKVDNLINAIETIKKAQLHKVIIALGMKNI 514

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN- 621
           G   ++ ++           ++++++ +N D+   L  +  +G     +I EF    +N 
Sbjct: 515 GTRSSKLISTK-------INKLSDLLTYNIDE---LENIDDIGPKSIASIKEFLSEDKNK 564

Query: 622 --ICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
             I  ++    +V+  SIG    N+S  I       TGTL K  R    + + + G    
Sbjct: 565 ELITFLDNYFIQVNDSSIGNKLVNLSFSI-------TGTLLK-PRDYFVDLIEKNGGQFH 616

Query: 679 AILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQF 714
            + + KT+ +IVG+NPGS K+ KA+ LG +++  ++F
Sbjct: 617 KLPTSKTNYLIVGENPGSAKINKAKILGTQVITIDEF 653


>gi|88855225|ref|ZP_01129890.1| DNA ligase [marine actinobacterium PHSC20C1]
 gi|88815753|gb|EAR25610.1| DNA ligase [marine actinobacterium PHSC20C1]
          Length = 775

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 161/493 (32%), Positives = 258/493 (52%), Gaps = 41/493 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++  AR E+ +L   I    D YY+  + ++ D+EYD L +R + +    P+L +S+D  
Sbjct: 25  ALAAARDEVGTLSTRILELRDAYYERDEVLVDDAEYDELIQRLERLEREHPEL-QSQD-- 81

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG+       V H+   LSL+ +++IE+   +  ++    Q+    ++ F  E 
Sbjct: 82  SPTLRVGGKAAALFDPVEHAERMLSLDNVFSIEEFADWAAKV----QRDSARAVDFLCEL 137

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           KIDG  I +RY  G  V AA RGDG  GEDV+  +  +  IP R+     P ++EVRGEV
Sbjct: 138 KIDGLAINLRYIDGVLVSAATRGDGRVGEDVTENVVRVDGIPQRLAGTGHPPMVEVRGEV 197

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLN----------FFVH 241
           +I    F  LN E   +G K +ANPRNAA+G LR+ +       L+            VH
Sbjct: 198 FIPLELFRELNAEQTRIGEKVFANPRNAAAGSLRQKSEGKSDEKLSHMRRRLASLRMLVH 257

Query: 242 GLG-----KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           G+G     +  +   + Q ++   +   G P +   R  ++      +       R ++ 
Sbjct: 258 GIGAWDGARDGQDPIRSQSDVYGVLATWGLPTSTHFRVVDSADKAADFIRYFGEHRDSVE 317

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           ++IDG+V KVDE +L  +LG  +R+PRW I++K+  +Q +T+LLDI + IGRTG  TP A
Sbjct: 318 HEIDGIVIKVDELALHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVGIGRTGRATPYA 377

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            +EP  + G+++  ATLHN+D +K         R G  + +GD V++++AG+VIP+++  
Sbjct: 378 VMEPALVAGSVVRQATLHNQDVVK---------RKG--VLIGDTVVLRKAGDVIPEILGP 426

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHF 475
           +   R      F  P+ CP C +     L P K G +    RC    +C AQ   R++H 
Sbjct: 427 VEELRDGSEYAFVMPTLCPECGT----PLRPMKEGDI--DLRCPNARSCPAQVRGRIEHA 480

Query: 476 VSRDAFNIEGLGK 488
            SR   +IE LG+
Sbjct: 481 GSRGGLDIEVLGE 493



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 30/233 (12%)

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
           DPAF     A++F+       S+  I+ I         NL ++  K     L R + SL 
Sbjct: 565 DPAFDPN--AELFSGSADAVPSSNAIKLI--------ANLQEAKTK----PLWRLLVSLS 610

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG   AR+LA Y+ S +                   L  V  VG IIA +++E+++ 
Sbjct: 611 IRHVGPVAARALADYFGSLEAIRTAKRE----------ELAAVDGVGQIIADSVIEWFEV 660

Query: 619 PRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQ 672
             +   V+   +  V  S   H    +++ ++  L     V TG+L    R  AQE +  
Sbjct: 661 DWHQEIVQRWAEAGVQWSTPGHPGPGAAQSKDGLLAGLTIVATGSLDGFTREGAQEAIIA 720

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GA  ++ +S+KTD +  G   GSKL KA++LG+ I++  QF  LL++  + L
Sbjct: 721 AGAKAASSVSKKTDYVAAGPGAGSKLTKAEELGITILDAAQFARLLEEGPSAL 773


>gi|302562478|ref|ZP_07314820.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
 gi|302480096|gb|EFL43189.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
          Length = 533

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 176/557 (31%), Positives = 270/557 (48%), Gaps = 58/557 (10%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY      + D  YD L R         PD      P  P  K+ G        V H++
Sbjct: 21  AYYGGGTSALDDDAYDRLVRGIADWEAEHPDAIL---PGSPTGKVAG--GAVEGDVPHTV 75

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL+ +++ E+   +   + R   +   ++  F++ PK+DG  +  RY  G+      
Sbjct: 76  PMLSLDNVFSAEEFTAWTASLAR---RIGHDAARFSVGPKLDGLAVAARYSDGRLTRLIT 132

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG +GEDVS  I  +  +P    L  P  +EVRGEV ++   F   N+   A G +P+
Sbjct: 133 RGDGTAGEDVSHAIGTVEGLPE--KLEEPVTVEVRGEVLMTTAQFEHANEVRTAHGGQPF 190

Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGL----GKTSEIFAK----GQYEMLQKMRCLG 265
           ANPRNAA+G LR  +    T  + FF +GL    G    +  +       E++   R LG
Sbjct: 191 ANPRNAAAGTLRARDRV-YTVPMTFFGYGLLPLPGTDPALAGRLDDLPHSELMALARDLG 249

Query: 266 FPVNNGVRQA------NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
             V+   R A       T   +++   E+ + R+ LP+ IDG+V K D    Q+  G  +
Sbjct: 250 --VHTSARTAVPDVVAGTVEEVLARVKEIAAARAELPFGIDGIVIKADLAEEQRAAGSGS 307

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R+PRW I++K    +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN    
Sbjct: 308 RAPRWAIAYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIDGSTITYATLHN---- 363

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
                   + R  RD+R+GD V+V RAG+VIP++   + + R  + QP  FP+ CP C S
Sbjct: 364 -----PADITR--RDLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPAQCPRCGS 416

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +       TG+     RC  G  C    +  L +   RD  +IEGLG  ++        
Sbjct: 417 DI------DTGE--ERWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGATRVVQLVD--- 463

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
            A  +   AD+F L+R Q  +  ++      G+ S  NL  ++ K +   L R + +LG+
Sbjct: 464 -AGLVADLADLFALRREQLLALERM------GETSTDNLLAALAKAKEQPLSRVLCALGV 516

Query: 560 RHVGAEIARSLAKYYLS 576
           R  G  ++R +A+Y+ +
Sbjct: 517 RGTGRSMSRRIARYFAT 533


>gi|80159718|ref|YP_398462.1| putative NAD-dependent DNA ligase [Clostridium phage c-st]
 gi|78675308|dbj|BAE47730.1| putative NAD-dependent DNA ligase [Clostridium phage c-st]
          Length = 649

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 203/717 (28%), Positives = 357/717 (49%), Gaps = 79/717 (11%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYD----ALKRRCDAIAHAFPDLARSE 69
           +E   + +  L +E++   + YY   K ++ D E+D     LK+        F       
Sbjct: 1   MENQIQRVKKLIKELNDASNKYYNSDKTVMTDKEWDDKYEELKQLEQETGVVFS------ 54

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             N P  K+G E+   L KV H+IP  SLEK  +I +L KFI                  
Sbjct: 55  --NSPTQKVGYEVKSKLDKVVHNIPLKSLEKTKSINNLEKFI------------RGKTII 100

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +  K DG    + YE G+ +  + RG+G  GED++  ++    IP  L ++    +++ G
Sbjct: 101 IMDKGDGLTCELIYENGELIQGSTRGNGTIGEDITHNVKTFKNIP--LQIDFKGYLKLSG 158

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E  I   DF  +N ++    +  Y+N RN  +G +R+L+    + R + F+   L +   
Sbjct: 159 ESVILDRDFELINSKLDEADK--YSNSRNLVAGSVRQLDSKICSNRNVRFYAFNLLECEN 216

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVR--QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           +  K + +  + +  LGF +    +        GI+S    M+       + IDGLV+  
Sbjct: 217 VDFKTKEDQFKFLNQLGFEIIEYTKCDPKQDLEGIIS---NMQKSAYERGFPIDGLVFTY 273

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++      LG+    P   I++KF +++  T+ +  + Q+ RTG++ PVA+ EPV I G+
Sbjct: 274 NDIKYANSLGDTLHHPLHSIAYKFYDEEYETKYITTEWQVSRTGMINPVAKFEPVEIEGS 333

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +I  ATLHN DY + L            +  GD + V +A +VIPKV+    N+   +A+
Sbjct: 334 VIERATLHNLDYFQDL-----------KLGQGDTIKVIKANQVIPKVMS---NKTMSNAE 379

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C  +    L  KT +++    CT  L CSA+ + R+ H+ SR+A NI+GL
Sbjct: 380 V--IPIECPVCGGKTEEKL-LKTARVLI---CT-NLECSAKHISRITHYCSRNAMNIDGL 432

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++ ++ F         ++   DI+ L++ ++    +I NI GFG  S  N+ ++I K +
Sbjct: 433 SEKTIEKFVN----LGYLKDIDDIYNLEQYKE----EIINIDGFGLKSYNNMIEAIEKSK 484

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  LE FIF+LGI++VG   A+ L K + S       I+ I+  N ++  S   +  +GD
Sbjct: 485 HCKLENFIFALGIQNVGLGTAKLLVKKFKS-------IDKIMNCNLEEIYS---IDGIGD 534

Query: 607 IIAQAIVEFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RH 664
           ++   I +++  N  +I  V  LLK +       ++N S++++ K  V TG +   + R+
Sbjct: 535 VVGNEIYKYFVINQDSINLVSKLLKYI--DFEEVKENNSNKLQGKTFVITGDVHIFKNRN 592

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +  V ++G  V+  +S+KT+ +I  D  +  SK +KA+ L + I+ EE+FL +++
Sbjct: 593 EIKAKVEEMGGKVTGSVSKKTNYLINNDSESASSKNKKAKDLNIPIITEEEFLGMIK 649


>gi|297571016|ref|YP_003696790.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595]
 gi|296931363|gb|ADH92171.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595]
          Length = 843

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 166/523 (31%), Positives = 258/523 (49%), Gaps = 98/523 (18%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE-MNLSLFKVTH 91
           + YY     +++D+ YDAL R   A+   FP L     P+ P  K+G + +   L  VTH
Sbjct: 28  ETYYSTGDQVMVDATYDALMRELRALEEEFPQLW---SPDSPSTKVGAKPVRGGLPSVTH 84

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
                SL+ +++ ++L ++ T +     K+  + + FT E KIDG  + + Y  G    A
Sbjct: 85  ISRMYSLQDVFSRDELAEWFTGV----SKELPDGVSFTTEVKIDGLALNLTYRNGWLERA 140

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFL----------- 199
           A RGDG +GEDV+  +R I +IP  L  + IPE++E+RGEV+     F            
Sbjct: 141 ATRGDGVTGEDVTRNVRMIASIPDQLRGDRIPELVEIRGEVFFPVAAFTQYNASVDARNA 200

Query: 200 ----------ALNDEMIAVGR---------------------------KPYANPRNAASG 222
                     A N E+ A  R                           KP+ NPRNAASG
Sbjct: 201 QIDARNERISAANREIAAQNRAIRAANASLPSDQQVAEIPSKRREAHVKPFVNPRNAASG 260

Query: 223 ILRRLNPTDIT-RYLNFFVHGLG---------KTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
            +R+ +   +  R L+F  HGLG         + S    +G Y M  +    G PV+N  
Sbjct: 261 TMRQEDTGSVALRSLDFLAHGLGALDGADDVLRASLSSQEGVYSMFIEW---GLPVSNVT 317

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
              ++   I  + +  ++ R++LP++ DG+  K+D+ + Q++LG   R PRW +++KF  
Sbjct: 318 ETHSSLAEINDFLDRFQNARTSLPFEFDGVAIKIDDRATQERLGYTTRVPRWAVAYKFPP 377

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
            +  TRLLDI +Q+GRTG +TP A +EPV + G+ ++ ATLHN           +V R G
Sbjct: 378 TEVQTRLLDIRVQVGRTGRVTPYAVMEPVFVDGSTVSQATLHN---------PTEVARKG 428

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR------DLN 446
             +R+GD V++++AG++IP+VV  I +ER      F  P+ CP C + +        DL 
Sbjct: 429 --VRIGDVVVIRKAGDIIPEVVGPIESERDGSEVEFVMPTHCPDCGAPIAAISEGDIDL- 485

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
                     RCT   +C AQ  +R+ H  SR A ++E LG +
Sbjct: 486 ----------RCTNQKSCPAQLTQRVVHIGSRGALDVEALGDE 518



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 15/189 (7%)

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNN 592
           ++  + D +   ++  L R + +L IRHVG   +++LA  + S     +  + +I A   
Sbjct: 662 TLLKILDELEGAKHKDLWRKLVALNIRHVGPVASQALADTFGSLDAMREASLEDISA--- 718

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENK 650
                   V  VG IIA + + ++    +   VE   ++   +  + E +  V   +   
Sbjct: 719 --------VEGVGPIIASSFLAWFGEEWHRQIVE-RWQDAGVTFKKEESDADVPQTLAGL 769

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+LQ   R   +E +   G   +  +S+KT++++VG+N GSK  KA++LG++I+N
Sbjct: 770 TIVATGSLQHFTRDGIKETIAAHGGKATGSVSKKTNLVVVGENAGSKATKAEELGIRILN 829

Query: 711 EEQFLFLLQ 719
           E QF  LL+
Sbjct: 830 EAQFQQLLE 838


>gi|293363574|ref|ZP_06610330.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2]
 gi|292552923|gb|EFF41677.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2]
          Length = 660

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 195/686 (28%), Positives = 338/686 (49%), Gaps = 59/686 (8%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + D  YD   +    I   +P+       N P   IGG  +    K  H+ P
Sbjct: 23  YYNLDTPSVTDEVYDQEYQELLEIESMYPEAILE---NSPSQIIGGFASNKFSKYKHNKP 79

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL K     ++ KF   I++     D N  FF LEPK+DG  I++ Y  GK V A  R
Sbjct: 80  MLSLNKANINSEIEKFYQDIFKVVT--DQNKGFF-LEPKVDGLSISLHYNNGKLVRAVTR 136

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GEDV+  I  I ++   L ++  E IE+RGEVY+SK +F  LN   +   +K +A
Sbjct: 137 GDGVFGEDVTENILQIKSVK--LKIDFLEEIEIRGEVYLSKKNFEKLNKTFLENDQKLFA 194

Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+   +  R L+  ++ + +        Q + ++ ++ LG       +
Sbjct: 195 NPRNAAAGTLRQLDKKIVKQRNLDVVLYEIVQPENYNISTQEDAIKFIKNLGLNTQKNNQ 254

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
                  I+   N+ +++++TL Y+ DGLV K ++F+    LG  ++ P++ I++K+  +
Sbjct: 255 LLFELSDILKAVNDFETMKNTLEYECDGLVIKYNDFTKWNLLGFTSKFPKYAIAYKYKAE 314

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           QA T +  ID+ +GRTG +  VA +EPV++  + ++ ATLHN DYI+ L           
Sbjct: 315 QAITTIRQIDVSVGRTGKINYVANVEPVSLNQSTVSKATLHNYDYIRDL----------- 363

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF--CPICQSRVVRDLNPKTGK 451
           ++ + D V++ +AGE+IPKV+ +     H      SF     CP C+S V+  ++    +
Sbjct: 364 NLNINDEVVIIKAGEIIPKVISL-----HKKNSLNSFEKVLNCPSCKS-VLETIDGNVDQ 417

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
                 C   L C  + +  + +F S+   +I GLG + +   +++      I+   DI+
Sbjct: 418 Y-----CL-NLNCEEKIINSIIYFASKPCLDINGLGDKIVKILYENN----IIKNIQDIY 467

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L  + +    +I  +  F D  + NL  S+ + +  S+ + + SLGI+++GA  ++ +A
Sbjct: 468 LLNNKVE----EIAKLRSFKDKKIENLLTSVEQSKGASISKVLSSLGIKNIGARASKLIA 523

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           K     ++               +L+L  +  + DI  +++        N    E ++  
Sbjct: 524 KKIDKLEDLY-------------YLNLNDLEDIADIGPKSVESIKLYLENESNKELIMFL 570

Query: 632 VSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
            +     H+K  ++E +   L F  TG L+  +R+     + Q G     + +++T  +I
Sbjct: 571 DNIFTYAHDKKANNEGKLNLLSFSITGKLEH-ERNYYISAIEQNGGEFHTVPTKQTSYLI 629

Query: 690 VGDNPG-SKLEKAQQLGVKIMNEEQF 714
           VG N G SKL KA + G K++  ++F
Sbjct: 630 VGLNAGDSKLNKALKNGTKLLTLKEF 655


>gi|227498227|ref|ZP_03928396.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434]
 gi|226832370|gb|EEH64753.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434]
          Length = 827

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 168/519 (32%), Positives = 261/519 (50%), Gaps = 76/519 (14%)

Query: 15  EQARKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++AR+    L + +      YY    ++    D+ YDAL R  + +  A+P L     P+
Sbjct: 28  QEARRRWEELAELVERARAAYYDALDAESTTSDAAYDALYRELEDLEAAWPQL---RVPH 84

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +GG    +   VTH+    SL+ ++++E+++++  R+       D  S+  T E 
Sbjct: 85  SPTRSVGGGRAQAFSPVTHAERMYSLQDVFSLEEVQEWAERVCADLGVAD-ASLPMTAEV 143

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191
           KIDG  + + Y  G    AA RGDG +GEDV+A +R I ++P  LS + +P +IEVRGEV
Sbjct: 144 KIDGLAVALTYTDGVLTRAATRGDGTTGEDVTANVRTIASVPHRLSGDQVPSLIEVRGEV 203

Query: 192 YISKNDFLALNDE----------------------------MIAVGRKPYANPRNAASGI 223
           Y     F   N E                            M+ V    +ANPRNAA+G 
Sbjct: 204 YFPVEAFARFNRERQEDNARREARNRALEEQGGGKRVRKEAMLQV----FANPRNAAAGS 259

Query: 224 LRRLNPT-DITRYLNFFVHGLGKTS----EIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278
           LR+ +P    +R L F  HG+G  +    E     Q+E  + +   G PV+        +
Sbjct: 260 LRQKDPAITASRPLAFIAHGIGAYTPAPGEQLPALQHEWYELLAGWGLPVS-------PY 312

Query: 279 HGIV-------SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           + +V       +Y       R  L ++IDG+V+K+D    Q +LG  +R PRW  ++K+ 
Sbjct: 313 NALVVGRAEREAYIERYAEHRHDLIHEIDGIVFKIDARDQQGRLGYTSRVPRWATAYKYP 372

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++  TRLLDID+Q+GRTG +TP   +EPV + G+ +  ATLHN +         +V R 
Sbjct: 373 PEEVHTRLLDIDVQVGRTGRVTPFGIMEPVLVAGSTVARATLHNAE---------EVTRK 423

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTG 450
           G  +R+GD V++++AG+VIP++V  +V  R    + F  P+ CP C +     L P K G
Sbjct: 424 G--VRIGDLVVLRKAGDVIPEIVGPVVEARDGSERVFVMPAACPSCGT----PLAPAKEG 477

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            +    RC    +C AQ  ER+ H  SR A ++EGLG +
Sbjct: 478 DV--DLRCPNTRSCPAQVTERVAHVGSRGALDVEGLGDE 514



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 18/191 (9%)

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           + T +   +   +   L R + +L +RHVG   AR+LA  + S +   Q   +       
Sbjct: 641 NATAVLAQLEAAKAQPLWRVLVALSVRHVGPTAARALAARFGSLEALRQASLD------- 693

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IEN 649
               L +V  VG  IA A  E+ +    +     +L   + +  R +  V++     +  
Sbjct: 694 ---ELSQVDGVGPTIAAAWQEWLE----VDWHREILDRWAAAGVRTQDEVTTTAPQTLAG 746

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
             +V TGTL+   R  A+E +   G   +  +S++T  ++VG N GSK  KA++LGV ++
Sbjct: 747 LSVVVTGTLEHFTREGAKEAIVARGGKAAGSVSKRTSYVVVGANAGSKETKARELGVPVL 806

Query: 710 NEEQFLFLLQQ 720
           +EE F  LL+ 
Sbjct: 807 DEEGFRALLEH 817


>gi|254233094|ref|ZP_04926421.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C]
 gi|124602153|gb|EAY61163.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C]
          Length = 495

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 164/518 (31%), Positives = 262/518 (50%), Gaps = 37/518 (7%)

Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
           ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG          ++    +R 
Sbjct: 3   LVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLALRA 62

Query: 264 LGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
            G PV+     A    G+   + Y+ E    R  + ++IDG+V KVDE +LQ++LG  +R
Sbjct: 63  WGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEVALQRRLGSTSR 119

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  ATLHN   IK
Sbjct: 120 APRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIK 179

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                    R G  + +GD V++++AG+VIP+V+  +V  R    + F  P+ CP C S 
Sbjct: 180 ---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSP 228

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +  +   K G   A  RC     C  Q  ER+ H  SR+  +IE LG +      +++  
Sbjct: 229 LAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK-- 281

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              I    ++F L  R    T       G    +   L  +++K +   L R + +L IR
Sbjct: 282 --VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIR 339

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG   AR+LA  + S       ++ I A + D    L  V  VG  IA A+ E++    
Sbjct: 340 HVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTIAAAVTEWFAVDW 389

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           +   V+         +   +++V   +    +V TG+L    R  A+E +   G   +  
Sbjct: 390 HREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGS 449

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL
Sbjct: 450 VSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 487


>gi|46204823|ref|ZP_00049431.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 277

 Score =  253 bits (646), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 126/276 (45%), Positives = 180/276 (65%), Gaps = 2/276 (0%)

Query: 96  LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155
           LSL   +  E++ +F+ RI RF   + D  I FT EPKIDG  + +RYE GK V AA RG
Sbjct: 2   LSLGNAFADEEVEEFVARIRRFLNLQADAPIAFTAEPKIDGLSLFLRYEAGKLVTAATRG 61

Query: 156 DGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           DG  GE+V+A    +  IP  LS  +IPE++EVRGEVY+S  DF A+N    A G+  +A
Sbjct: 62  DGEVGENVTANALTVKDIPETLSGADIPEVLEVRGEVYLSHADFAAINARQEAAGKPLFA 121

Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+P    +R L FF +  G+ SE F + Q  +L +    G PVN   +
Sbjct: 122 NPRNAAAGSLRQLDPAITASRPLRFFAYAWGEVSEPFTQTQSAVLDRFGGWGLPVNPQTK 181

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
              +   ++++Y  +++ R+ L YDIDG+VYKVD+   Q++LG  +R+PRW ++HKFA +
Sbjct: 182 LCRSAEEMIAHYRAIEAERADLGYDIDGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQ 241

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +A T LL IDI +GRTG L P+ARL+PV +GG +++
Sbjct: 242 EALTELLAIDINVGRTGSLNPLARLKPVTVGGVVVS 277


>gi|71894578|ref|YP_278686.1| DNA ligase [Mycoplasma synoviae 53]
 gi|123734274|sp|Q4A5J6|DNLJ_MYCS5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71851366|gb|AAZ43975.1| DNA ligase [Mycoplasma synoviae 53]
          Length = 697

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 208/747 (27%), Positives = 358/747 (47%), Gaps = 87/747 (11%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +Q ++++ SL   + + +  YY    P + D  YD+L      +   +P L   +  
Sbjct: 1   MSNQQIKEKIISLNNYLKHLNHLYYDLDAPEVDDKTYDSLYNELLELEAKYPSLVLED-- 58

Query: 72  NGPLNKIGGEMNLSLFKVT-HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              + KI G    + FK T H+   LSL+K +   ++  F      F Q K+  +  F+L
Sbjct: 59  --SVTKIIGAFVSNKFKKTKHNKEMLSLDKAYKESEIFSFYEN---FTQYKNLENFGFSL 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPKIDG  I+I Y+ GKF+ A  RGDG +GEDVS  +  I  +P+ +S   P  +EVRGE
Sbjct: 114 EPKIDGLSISIHYDNGKFIKAITRGDGTTGEDVSENVFQIRDVPKQISYLKP--LEVRGE 171

Query: 191 VYISKNDFLALNDE----------------MIAVGRKP------------YANPRNAASG 222
           +Y+ K+ + +LN++                M A+ +              + N RNAA+G
Sbjct: 172 IYMKKSTWKSLNEDIKNQYFQTNIEKIFSYMQALPKSKSWSNLKIKTPIFFKNARNAAAG 231

Query: 223 ILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281
            LR+ +P  + +R L+   + +    E   K Q E+L  ++   F VN   + A     I
Sbjct: 232 TLRQKDPKIVKSRNLSSLFYEIVSPLEHNLKTQMEVLAFLKEQNFEVNEFQKLAKNDQEI 291

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
           +   NE   I++   +D DG V K +     +Q+G  ++ P+W I++K+  ++A+T++L+
Sbjct: 292 MFEINEFSKIKNNFEFDCDGFVIKFNLIDKWEQIGFTSKFPKWAIAYKYMLEEANTKILN 351

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           I  Q+GRTG +T +A+  PV +    + NATLHN ++IK             +I +GD +
Sbjct: 352 IVAQVGRTGNITYIAQFMPVELNNTTVQNATLHNYEFIK-----------KNNINIGDEI 400

Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
            + ++GE+IPKV+ I   +++ D+  F     CP C S     L    G +    R    
Sbjct: 401 TIIKSGEIIPKVISIY--KKNTDS-VFEKVLNCPSCNSL----LEIPEGYVDQFCRNEN- 452

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  ++++ L  FVS++  NI  L  Q +  F+    P   +R   DIF L+       
Sbjct: 453 --CDEKKIQMLTFFVSKNCLNITNLSVQNIRIFYNH--PVIQMREIQDIFLLKNH----V 504

Query: 522 TKIENILGFGDVS-----VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
            +I+ I  F   S     + N+  SI K ++  L   + +LGI+ +G  IA +L      
Sbjct: 505 DEIKKIKFFAGKSQENKKINNILQSIEKAKDAYLRNVLAALGIKGIG-NIAANL------ 557

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
                 +I  +   NN     L+ +   G+   + + EF  + +N    + L+K +  ++
Sbjct: 558 ---LTNKITKLSDLNNLTDEDLLSIDTFGEKSIENLKEFLSSEKN----QDLIKFLDENL 610

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
                  SS++ N     TG+L  I R + ++ +   G + S  +S+ T  +I      S
Sbjct: 611 NYLNSKKSSKLNNLNFAITGSLS-ISRDEFKKIILDNGGIFSNSVSKNTSYLISNSKENS 669

Query: 697 -KLEKAQQLGVKIMNEEQFLFLLQQYN 722
            K++KA +  +K++ EE+F  LL++ N
Sbjct: 670 TKIKKALENNIKVITEEEFHNLLKEEN 696


>gi|271965050|ref|YP_003339246.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
 gi|270508225|gb|ACZ86503.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
          Length = 696

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 204/716 (28%), Positives = 324/716 (45%), Gaps = 79/716 (11%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY      + D  YD L R   A     PD      P  P  K+ G     +  V H++P
Sbjct: 30  YYGDGTSTLDDDAYDRLVRGIQAYEAEHPDEVL---PTSPTGKVAG--GAVVGDVPHTVP 84

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ ++    L  +   + R   +       +++EPK+DG  I  RY  G+ V    R
Sbjct: 85  MLSLDNVFGAGQLADWAASLERRLGRPVTE---WSVEPKLDGLAIAARYRGGRLVQLVTR 141

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG +GEDVS  I  I  +P  L+   P  +E+RGEV ++ + F     +  A     +A
Sbjct: 142 GDGTAGEDVSHAIGTIVGLPARLAE--PVTVELRGEVMMTASQFEDACVKRQAHDGTTFA 199

Query: 215 NPRNAASGILRRLNPTDITRYLNFFVHGL----GKTSEIFAKGQYEMLQKMRCLGFPVNN 270
           NPR+AA+G LR  +   +   L FF +G       TSE     Q   L     + +    
Sbjct: 200 NPRSAAAGTLRAQDRPYVCE-LTFFGYGALPYPDDTSEQAV--QLRELPHSEVMTWVAGQ 256

Query: 271 GVRQ----------ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           GV+           A T   I     ++ + R+ LP+ IDG+V K D  + Q Q G  +R
Sbjct: 257 GVQTPAVTDVGGIVATTLEQIQERVEQIAAKRTELPFGIDGIVIKCDLAADQAQAGFSSR 316

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I++K    +  T+LL ++   GR+GI+ P A LEPV + G+++T ATLHN     
Sbjct: 317 APRWAIAYKLPATEKITKLLGVEWNTGRSGIIAPRAVLEPVELDGSIVTYATLHN----- 371

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                  + R  R + +GD V+V +AG+VIP+V   +V+ R  D QP + P  CP C   
Sbjct: 372 ----VADITR--RGLMLGDSVVVYKAGDVIPRVEAPVVHLRTGDEQPIAIPQVCPTCGDA 425

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +  D + +        RC  G AC  + +  + +   RD  +IEGL + ++       D 
Sbjct: 426 I--DASQER------WRCVRGRAC--RVIASIGYAAGRDQLDIEGLAENRIQQLL---DA 472

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIFSL 557
              +   AD+F L R         E +LG    G  S  NL  +I + +   L R   +L
Sbjct: 473 GLIVDF-ADLFYLTR---------EQVLGLERMGATSTDNLLAAIERAKAQPLSRVFCAL 522

Query: 558 GIRHVGAEIARSLAKYYLSYQNF----AQEINNI--IAHNNDDWL--SLIRVPLVGDIIA 609
           G+R  G  ++R +A+++ S        A+ I  +  I       +   L+ +  + D + 
Sbjct: 523 GVRGTGRSMSRRIARHFGSMDAIRAADAEAIEAVEGIGPKKAPGVVAELVELADLIDKLV 582

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT----GTLQKIQRHK 665
           +A V   +      A      +  P  G         +    +V T    G L+ + R++
Sbjct: 583 KAGVTMTEPGWTPPAEPGADAQADPEAG---GTSGLPLAGMSVVVTGAMSGALEALTRNE 639

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             E + + G   S+ +S KT +++ G+  GSK  KA+ LGV+I+  E+F  L+  +
Sbjct: 640 MNELIERAGGKASSSVSAKTSLLVAGEKAGSKRAKAESLGVRIVGPEEFAGLVGPF 695


>gi|168187649|ref|ZP_02622284.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
 gi|169294495|gb|EDS76628.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
          Length = 649

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 198/717 (27%), Positives = 352/717 (49%), Gaps = 79/717 (11%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED--- 70
           +E   + +  L +E++   D YY   K  ++D E+D            F +L + E    
Sbjct: 1   MEDKTQRVKELIKELNEASDKYYNSDKTTMIDKEWD----------DKFDELKQLEQETE 50

Query: 71  ---PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               N P  K+G E+   L KV H+IP  SL K  +I+DL+KFI           +N I 
Sbjct: 51  VILSNSPTQKVGYEVKSKLDKVVHNIPLKSLGKTKSIDDLQKFIG----------NNEIL 100

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
                K DG    + Y+ G+ +  + RG+G  GED++  ++    IP  L ++    +++
Sbjct: 101 IM--DKGDGLTCELIYDNGQLLQGSTRGNGEIGEDITHNVKTFKNIP--LQIDFKGYLKL 156

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246
            GE  I   DF  +N ++    +  Y+N RN  +G +R+L+      R + F+   L + 
Sbjct: 157 SGESVILDEDFELINAKLDEEDK--YSNSRNLVAGSVRQLDSKICDKRNVRFYAFSLLEC 214

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E   K + E L+ +  LGF     ++  N+   +    ++M+       + IDGLV+  
Sbjct: 215 GEAEFKTKEEQLEFLSRLGFETIEYIKYDNS-EELEQVISKMQKSAYEKGFPIDGLVFAY 273

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +       LG+    P   I++KF +++  T+ +  + Q+ RTG++ PVAR EPV I G+
Sbjct: 274 NNIEYANSLGDTLHHPLHSIAYKFYDEEYETKYIATEWQVSRTGMINPVARFEPVEIEGS 333

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++  ATLHN DY + L            +  GD + V +A +VIPKV+    N+   + +
Sbjct: 334 VVERATLHNLDYFEDL-----------KLGQGDTIKVIKANQVIPKVMS---NDTMSNTE 379

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP+C  +    L  KT +++    C     CSA+ + R+ H+ SR+A NI+GL
Sbjct: 380 I--IPTECPVCGGKTEEKL-LKTARVLI---CINP-ECSAKHISRIVHYCSRNAMNIDGL 432

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++ ++ F         ++   DI+ L++ ++    +I NI GFG  S  N+ ++I K +
Sbjct: 433 SEKTIEKFVN----LGYLKDIDDIYKLEQYKE----EIINIDGFGTKSYNNMIEAIEKSK 484

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  LE FIF+LG+  VG   A+ L K + S +             N +   +  +  +GD
Sbjct: 485 HCKLENFIFALGVPSVGLGTAKLLVKKFKSIEKVM----------NCNLEEIYSIDGIGD 534

Query: 607 IIAQAIVEFY-QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RH 664
           ++   I  ++  N  +I  V  LLK +       +++ S+++E K  V TG +   + R+
Sbjct: 535 VVGNEIYNYFIINKDSINLVNKLLKFI--DFEEVKESSSNKLEGKTFVITGDVHVFKNRN 592

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +  + ++G  V+  +S+KTD +I  D  +  SK +KA+ L + I+ EE+F+ +++
Sbjct: 593 EVKAKIEEMGGKVTGSVSKKTDYLINNDVESTSSKNQKAKDLNIPIITEEEFVEMIK 649


>gi|302668858|ref|YP_003832683.1| NAD-dependent DNA ligase LigA2 [Butyrivibrio proteoclasticus B316]
 gi|302397198|gb|ADL36101.1| NAD-dependent DNA ligase LigA2 [Butyrivibrio proteoclasticus B316]
          Length = 745

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 208/765 (27%), Positives = 343/765 (44%), Gaps = 84/765 (10%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           AL  + ++K+   L+ ++      YY    P + D EYD L  +  A     P     + 
Sbjct: 9   ALGEQLSKKDYEKLKNKLMDLARAYYDDDAPKVSDHEYDMLMVQLKACEKKNPSWVTDDS 68

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +     IGG  +    KVTH +P LS+E ++N E +++++  +     K +     FT+
Sbjct: 69  IS---QVIGGTASSKFSKVTHDVPMLSIEDVFNKESVKEWMENV-----KTNYPDAGFTV 120

Query: 131 EPKIDGTMITIRYEKGK-------------FVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
           E KIDG   T+RY+                 V A  RG+G  GEDV+  +  IP +P+ L
Sbjct: 121 EEKIDGLSCTLRYKTNDTEPYDEANCVCYDLVLAETRGNGIIGEDVTENVLQIPDVPKRL 180

Query: 178 SLN---IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233
            L+     +  +VRGE+Y+   +F   N++ +  GRKP ANPRN A+G LR+     +  
Sbjct: 181 FLSHDLYGDSFQVRGEIYMKHENFEKFNEKEVKAGRKPAANPRNLAAGTLRQKEAVLVKE 240

Query: 234 RYLNFFVHGL----GKTSEIFAKGQYEMLQKMRCLGF--PVNNGVRQANTFHGIVSYYNE 287
           R LN F+  +    G T +I  + QYE +Q ++  GF   +    R       ++  Y  
Sbjct: 241 RGLNMFIFRVQKVEGATRDILTRTQYEAMQILKKDGFKTAICGFARTFEEVEALIDEYET 300

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
            K  R    YDIDG V K+D    Q      ++     I++K+ +K+   R+ DID+ +G
Sbjct: 301 HKDGR--FGYDIDGAVVKIDVIEHQDDFSTSSKYIPGHIAYKYPQKEQKARVTDIDVALG 358

Query: 348 RTGILTPVARL------EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           RTG LT  A +      EP+ + G  ++  TLHN DYI+            R I +G   
Sbjct: 359 RTGKLTFTAVVCDDETGEPLQMCGTSVSRVTLHNMDYIR-----------ERHIGIGGVY 407

Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
            + ++GE+IPK+ + I  E  P+ + F  P+ CP C S +V         L +       
Sbjct: 408 GIFKSGEIIPKLTETIYKE--PE-RLFEVPTVCPFCGSPIVN--------LGSTDYFCSN 456

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  + +++L +FV RD  NIEGL  + + F         +   PA ++    +     
Sbjct: 457 DNCKERAIQQLDYFVGRDQMNIEGLSIESIRFL--DSKGYINASAPASLYFQAEKWHEDG 514

Query: 522 T---------KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
                      +EN  G+ + SV NL  +I+K R     R + S G+ +VG   A+ L K
Sbjct: 515 VFAKLGKPEIHLENEDGWSEKSVENLVTAIDKSRTSDFIRVLASFGLPNVGHGQAKLLKK 574

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA----- 627
               +          +           ++   GD+I + + +F Q+  ++   +      
Sbjct: 575 AIEKFDGKEANYFGRLLEMYKAGYDFSKIEGFGDVIKKTLNDFCQSILDLGIPDKDHTAQ 634

Query: 628 ----LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILS 682
               LL  V       +   +S +E    V TG+ +  + R   ++ +  LG  VS  +S
Sbjct: 635 KYVDLLDAVDILFIEEKAAGASSLEGLTFVVTGSFENYKPRKLLEDEIESLGGKVSGTVS 694

Query: 683 RKTDIIIVGDNPGS--KLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            KT  +I  D   S  K +KA++LGVKI++E+++  +    N +L
Sbjct: 695 AKTSYLINNDTTSSSGKNKKAKELGVKIISEQEYRAMAYLGNISL 739


>gi|145627934|ref|ZP_01783735.1| DNA ligase [Haemophilus influenzae 22.1-21]
 gi|144979709|gb|EDJ89368.1| DNA ligase [Haemophilus influenzae 22.1-21]
          Length = 346

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 150/382 (39%), Positives = 230/382 (60%), Gaps = 50/382 (13%)

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
           D++ Q+GRTG +TPVA+LEPV + G  ++NATLHN D I+ L+           I +GD 
Sbjct: 3   DVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLN-----------IAIGDT 51

Query: 401 VLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459
           V+++RAG+VIP+++ ++ +ER PD A+P  FP+ CP+C S+++R      G+ VA  RCT
Sbjct: 52  VVIRRAGDVIPQIIGVL-HERRPDNAKPIIFPTNCPVCDSQIIR----IEGEAVA--RCT 104

Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
           GGL C+AQ+ E LKHFVSR A +I+G+G + ++     E     I  PAD+F L     T
Sbjct: 105 GGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRE----LIHTPADLFKLDL---T 157

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
           + T++E +   G  S  N  +S+   ++ +L RFIF+LGIR VG   A +LA ++ +   
Sbjct: 158 TLTRLERM---GAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLD- 213

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
                    A  + +   L +VP VG+++A  I  F++   N+  VE L+ +     G H
Sbjct: 214 ---------ALKDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQ-----GVH 259

Query: 640 EKNV----SSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
            + V    +SE   ++K +V TGTL ++ R++A+  + QLGA VS  +S KTD +I GD 
Sbjct: 260 WETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDA 319

Query: 694 PGSKLEKAQQLGVKIMNEEQFL 715
            GSKL KAQ+L + ++ EE+FL
Sbjct: 320 AGSKLAKAQELNITVLTEEEFL 341


>gi|160881055|ref|YP_001560023.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg]
 gi|190359247|sp|A9KPL0|DNLJ_CLOPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160429721|gb|ABX43284.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg]
          Length = 653

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 213/719 (29%), Positives = 343/719 (47%), Gaps = 87/719 (12%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG---- 73
           ++ ++ L + +      Y Q  + I+ + EYD L          + +L + E+  G    
Sbjct: 5   KQRITQLTELLDEAARVYEQEDREIMSNFEYDKL----------YDELKKLEEETGIVLA 54

Query: 74  --PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  K+G E+   L K  H    LSL+K   +  L          W    +      L 
Sbjct: 55  GSPTRKVGYEILSELPKERHESAMLSLDKTKEVPALID--------WLGNKEG----ILS 102

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVR 188
            K+DG  I + Y  G+ V A  RG+G  GE V+   +    +P    L IP   E+I +R
Sbjct: 103 WKMDGLTIVLTYRNGELVKAVTRGNGEVGEVVTNNAKVFKNLP----LTIPYEGELI-IR 157

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GE  I  +DF  +N ++     K Y NPRN  SG +R+LN      R +NFF   L +  
Sbjct: 158 GEAVIRYSDFEMINAQIPDADAK-YKNPRNLCSGSVRQLNNAITAKRNVNFFAFALIRMD 216

Query: 248 EIFA-KGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           E+   K   E    ++ LGF V    +  A      + Y+ E   I +  P D  GLV  
Sbjct: 217 EMNRFKTMMEQFNWLKELGFDVVEEKLVTAENMAETMEYF-ESHIITNDFPSD--GLVLF 273

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
            ++ +  + LG  ++ PR  I+ K+ ++   T L +I+    RTG++ PVA  EPV + G
Sbjct: 274 FNDIAYGESLGRTSKFPRNGIAFKWRDEIKETTLQEIEWSASRTGLINPVAIFEPVELEG 333

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A+LHN   ++GL           ++ +GD+V V +A  +IP++ D +    H   
Sbjct: 334 TTVSRASLHNISIMEGL-----------ELGLGDKVTVYKANMIIPQIADNLTRSGH--- 379

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P  CP+C      D   K    V +  C     C A++++   HFVSRDA NIEG
Sbjct: 380 --LPIPKTCPVCGG----DTMIKQDSDVKSLYCMNP-ECLAKKIKSFTHFVSRDAMNIEG 432

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           L +  ++           I+  ADIF ++  ++  TT    + GFG+ S  NL DS+ K 
Sbjct: 433 LSEATIEKLIAKG----LIKELADIFHVKDFKEEITT----MEGFGEKSFRNLVDSVEKA 484

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R   L +FI+SLGI +VG      LA   L  + F  + N +     D+   L ++P +G
Sbjct: 485 RTPILAKFIYSLGIANVG------LANAKLICKEFGYDFNKVSNATVDE---LTQIPQIG 535

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKI-QR 663
            +IA+A V ++Q P N   +E LLKE+  +  + E    SE ++    V TG+++    R
Sbjct: 536 YVIAEAFVSYFQKPENKLIIEDLLKEI--TFEKEEAAGGSEKLKGLTFVITGSVEHFTNR 593

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ ++ + Q G  V+  ++ KT+ +I  DN    SK +KA++LG+ ++ EE+F+ LL +
Sbjct: 594 NEVKDVIEQHGGKVTGSVTAKTNYLINNDNTSSSSKNKKARELGIPVITEEEFIQLLNE 652


>gi|298345134|ref|YP_003717821.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063]
 gi|298235195|gb|ADI66327.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063]
          Length = 799

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 163/514 (31%), Positives = 265/514 (51%), Gaps = 54/514 (10%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI----ILDSEYDALKRRCD 56
           +KK+  IP      E A  + + L  +I      YY  +       + D+EYDAL  +  
Sbjct: 2   VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQTPETGVTRLSDAEYDALFVQLQ 55

Query: 57  AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIY 115
            +  A+PDL   + P   +   G   N   F   H +  + S++ +++  ++  +  R+ 
Sbjct: 56  LLEAAYPDLVTPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWWARVE 115

Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP- 174
           +  + +D      + E K+DG  +++ Y  G     A RGDG +GEDV+  ++ I T+P 
Sbjct: 116 KSLEGQD---FSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIATVPV 172

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233
           R+   N+PE++E+RGEVY+   DF A+N      G K +ANPRNAA+G L++ +P     
Sbjct: 173 RLSGENVPELVEIRGEVYLPLADFAAMNAARERDGEKLFANPRNAATGSLKQKDPVQAAK 232

Query: 234 RYLNFFVHGLGK-------------TSEIFAKGQYEMLQKMRCLGF---PVNNGVRQA-- 275
           R L F  HG+GK             T E F    YE+L+          P + G+  A  
Sbjct: 233 RPLAFLAHGVGKVRWADPGAAAHLETQEDF----YELLESWGLHSVRETPASLGLSLAGI 288

Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
           ++   I +  ++M + R    + IDG+V KVD F+ +  LG  AR+PRW  ++KF  ++ 
Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            TRLL I++Q+GRTG +TP   +E V + G+ ++ ATLHN         + +V R  +D+
Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHN---------AKEVAR--KDV 397

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           R GD V++++AG++IP+++  +++ R      +  P  CP C + +      K G +   
Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRTAGLPEWVMPDTCPSCGTELGAQ---KEGDI--D 452

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            RC     C AQ  ERL H  SR+A +IEGLG++
Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEE 486



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 34/266 (12%)

Query: 466 AQQLERLKH-FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524
           A Q E L+   V R+     G   QQ+ FF+    P            L +  Q +T + 
Sbjct: 552 ALQPEDLRDVMVWREIPGTGGRDWQQVRFFWAKPRP------------LPKAAQEATGQR 599

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF---- 580
                 G V V   ++ +   ++  L R + +L IRH+G   AR++A+ +++        
Sbjct: 600 FGPPVAGKV-VQTFFEQLQAAKSKELWRVLVALSIRHLGPVAARTIARQFVTMSALRVAS 658

Query: 581 ------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
                 A+ I  +IA +  DW +   VP       Q IV+ ++    + AV         
Sbjct: 659 AEQLGEAEGIGEVIAASIRDWFT---VPW-----HQEIVDAWEA-AGVGAVSKAEGASEA 709

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
           S+   + N++  +E   +V TG +    R  AQ  V   G   +  +S+KTD+++ G   
Sbjct: 710 SLA-GDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGKATGSVSKKTDLVVAGAGA 768

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           GSKL KAQ LG+ ++    F  LL++
Sbjct: 769 GSKLSKAQALGIPVIESAGFEALLEK 794


>gi|260438468|ref|ZP_05792284.1| DNA ligase, NAD-dependent [Butyrivibrio crossotus DSM 2876]
 gi|292809057|gb|EFF68262.1| DNA ligase, NAD-dependent [Butyrivibrio crossotus DSM 2876]
          Length = 649

 Score =  249 bits (637), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 205/706 (29%), Positives = 339/706 (48%), Gaps = 98/706 (13%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLFK 88
           YY  +  I+ + EYD L          + +L   E+  G      P +K+G E    L K
Sbjct: 21  YYSGTDEIMSNFEYDRL----------YDELVELENETGIHMSGSPTSKVGYETLSELPK 70

Query: 89  VTHSIPTLSLEKIWNIEDLRKF--ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
             H  P LSL+K  +++ L +F  + +    W              K+DG  + + Y  G
Sbjct: 71  ENHEKPMLSLDKTKSVDTLAEFAGVHKCLLSW--------------KLDGLTVVLTYNNG 116

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGEVYISKNDFLALND 203
           + V A  RG+G+ GE ++   +    IP    L IP   E+I +RGE  I+ +DF  +ND
Sbjct: 117 ELVKAVTRGNGYVGEVITPNAKVFKNIP----LTIPYKGELI-LRGEAIITYSDFNRIND 171

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI----FAKGQYEM 257
            +I    K Y NPRN  SG +R+LN  +IT  R +      L K   I      + Q+E 
Sbjct: 172 SIIDDAEK-YKNPRNLCSGSVRQLN-NEITAKRNVKLIAFALIKAEGINFHNSVEEQFEF 229

Query: 258 LQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           L+K    GF V    +    T H  V Y+++ K   +  P D  GLV   D+ +    LG
Sbjct: 230 LEKQ---GFEVVERKIVDGTTVHSAVQYFSD-KIKENDFPSD--GLVMIYDDINYGLSLG 283

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PR  I+ K+ ++ A T L +I+    RTG++ PVA  +PV + G  +T A++HN 
Sbjct: 284 TTAKFPRNAIAFKWKDETALTTLREIEWSASRTGLINPVAIFDPVELEGTTVTRASVHNV 343

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             +K L            + +GD++ V +A  +IP++ + I +     +     P  CP+
Sbjct: 344 SIVKEL-----------KLGIGDKITVYKANMIIPQIAENITS-----SGTAVIPDKCPV 387

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C        +     L   ++      CSA+ ++R +HF  R+A NIEG+  Q LD F +
Sbjct: 388 CGENTQIIESAGASFLYCVNK-----DCSAKHIKRFEHFCERNALNIEGISMQTLDKFIE 442

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DI+ L R ++    +I ++ GFG  S  N+ +SIN  R   L   I+ 
Sbjct: 443 ----CGYIKEFEDIYHLDRYEE----RIVSMDGFGKKSYDNMIESINNSRTAMLANVIYG 494

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   AR + +Y      F  ++  +I    D+   L+ +  +G+++A + V+++
Sbjct: 495 LGIDGIGLAGARLICRY------FEDDVYKVINATKDE---LLLIDGIGEVLADSYVKYF 545

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK-IQRHKAQEYVTQLGA 675
            + +N    E LLKE+   + + E+N +S +  K  V TG+L     R + +  + Q G 
Sbjct: 546 SDEKNRKEFELLLKEL--HLVKEERNTNSPVSGKTFVITGSLNHYANRDELKAVIEQNGG 603

Query: 676 VVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  +S KTD +I  D  +  SK +KA++LG+ +++E+ F+  L+
Sbjct: 604 KTTGSVSAKTDYLINNDLTSNSSKNKKAKELGIPVISEDDFIKFLE 649


>gi|160940658|ref|ZP_02088001.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436393|gb|EDP14160.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC
           BAA-613]
          Length = 699

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 203/722 (28%), Positives = 339/722 (46%), Gaps = 72/722 (9%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           EA+ I    K+L+    E       YY  + P + D+ YD L    DA+      +    
Sbjct: 36  EAIRIHHLVKQLNQYRHE-------YYNMNAPSVSDAVYDCLFDELDALEKRTGIIL--- 85

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             N P   +G +    L KV H IP LSL+K        K IT I+ F +K+        
Sbjct: 86  -SNSPTQTVGYQAVSQLDKVHHPIPLLSLDKT-------KQITEIHDFMKKQKS-----L 132

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           L  K+DG  I + YE G+ + A+ RGDG  GE V+    A   IP  LS+   + + + G
Sbjct: 133 LMLKLDGLTIKLTYENGRLIEASTRGDGDEGEIVTHNASAFRNIP--LSIPYQKRLVISG 190

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-----DITRYLNFFVHGLG 244
           E +I  +DF  L + ++     PY N RN A+G  R L+        ++ Y    + GL 
Sbjct: 191 EAFIHIHDFERLQNTLLDSNGNPYRNARNLAAGSARCLDANICKERSVSFYAFHVLEGLD 250

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN--TFHGIVSYYNEMKSIRSTLPYDIDGL 302
           ++SE+ +K +   L  +  LGF +   +  ++  +   +      ++ + S L   IDGL
Sbjct: 251 ESSEL-SKSREARLTALHPLGFDICPFLVLSSEASLETLNEAMATLRDLASELDIPIDGL 309

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V + D+       G   R  +   + KF +    T    I+ Q GRTG + PVA  +P+ 
Sbjct: 310 VLRYDDLPYSVACGRTGRFYKDGKAFKFEDDTFKTIFRSIEWQTGRTGEIAPVALFDPIE 369

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I G+ ++ A+LHN  +I+ L+           +  G R+LV +   +IP + + +    +
Sbjct: 370 IDGSTVSRASLHNLTFIQDLE-----------LYPGCRILVSKRNMIIPHIEENLDRGHY 418

Query: 423 PDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            D  P +    CP C S   +   +  + ++V    C     CS Q L+R  HF  + A 
Sbjct: 419 QDMTPRT----CPCCGSPTRIYSRSSGSERIVQTLHCDNP-NCSQQILQRFVHFCEKKAM 473

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI G+ +  L  F    D  F ++   DI+ L R     + +I ++ GFG  S   L++S
Sbjct: 474 NIIGISEATLKQFI---DLGF-LKCFQDIYHLDR----FSDQIADMDGFGKKSYERLWNS 525

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           IN+ RN +  R++ ++ I  +G   +R L +Y+  + N  +    + A +  D+  L   
Sbjct: 526 INESRNTTFVRYLVAMDIPMIGRTASRKLEQYF--HGNLLEL--ELAAMSRFDFTCL--- 578

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK-----KLVFTG 656
              G+ ++  I+E++ +  N+     L KE+       E+ + +E +N       +V TG
Sbjct: 579 EDFGETMSSNIIEWFHDRENLTLWRNLQKEMH--FKEREETIMTETKNNPFAGCTIVATG 636

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L+   R      +  LGA   + +++KTD +I G+  GSKL KAQQLGVK+++E++FL 
Sbjct: 637 KLENFTRDSINSKIISLGATAGSSVTKKTDYLICGEKAGSKLAKAQQLGVKVLSEQEFLN 696

Query: 717 LL 718
           ++
Sbjct: 697 MI 698


>gi|255283571|ref|ZP_05348126.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
 gi|255265833|gb|EET59038.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
          Length = 667

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 200/724 (27%), Positives = 329/724 (45%), Gaps = 77/724 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ    +  L Q ++ H + YY  + P I D EYD L          + +LA  E   G
Sbjct: 1   MEQKITRMKQLIQNLNKHRNAYYNLNAPTITDQEYDRL----------YDELAALEKETG 50

Query: 74  ------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
                 P   +G     SL KVTH    LSL+K   + ++   +TR          N   
Sbjct: 51  VILSYSPTQTVGYYPVSSLAKVTHPHRLLSLDKTKQVSEICALLTR----------NPAL 100

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             L  K+DG    + YE GK + A+ RGDG +GED++  I A   +P  L++   + + +
Sbjct: 101 LML--KLDGLTTKLVYENGKLLQASTRGDGETGEDITHNIPAYRNVP--LTIPYTKRLVI 156

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFF--VHGLGK 245
            GE YI  +DFL L D +     KPY N RN A+G +R LNP        +F   H L  
Sbjct: 157 TGESYIHADDFLRLKDTLFDSSGKPYRNARNLAAGSVRSLNPEKCAPRCVYFSPFHVLEG 216

Query: 246 TSEIFAKGQYEM-LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS-----TLPYDI 299
             EI      ++ L  ++  GF +   +   +           ++ +R       +P  I
Sbjct: 217 LEEIPHSDSRKLRLSSLKPFGFDICPYIALTDPVPSQEQVQEAIEQLRKEATEKQIP--I 274

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V   D  S  K  G      +  +++KF ++Q  T L DI+    R+G + PV   +
Sbjct: 275 DGIVAIFDSLSYSKSCGSTGHHYKDGLAYKFEDEQYETVLRDIEWTPTRSGEIAPVGVFD 334

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
            V I G  ++ A+LHN  +IKGL           ++  G R+LV +   +IP + + +  
Sbjct: 335 TVEIDGCKVSRASLHNLTFIKGL-----------ELVPGCRILVSKRNMIIPHIEENLDR 383

Query: 420 ERHPDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            R+ D      P  CP C S+  +       G+++    C G  +C  Q L + +HF  +
Sbjct: 384 GRYHDI----VPPLCPCCSSKTWICRKKASDGRIIETVHC-GNPSCDTQILRKYEHFTGK 438

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A NIEGL    L+ F    D  + +    D++ L R ++    +I  + GFG+ S   L
Sbjct: 439 KAMNIEGLSSATLERFL---DLGYIMSF-QDLYHLDRYRE----QILQLEGFGEKSFDRL 490

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +DSI K R+    R++ ++ I  +G   +R L +       F   +++  A    D+   
Sbjct: 491 WDSIQKSRHTDFVRYLVAMDIPMIGRTKSRILNEI------FQGSLDDFEAAAAGDY-DF 543

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVF 654
             +   G+I+   I  ++ +  N+   + L KE +    + E  +    EN    + +V 
Sbjct: 544 STLEDFGEILNHNIHSWFSDEENLHLWKELQKEFTFE-SKEENTMKETRENPFRGRTVVA 602

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG L+   R      + +LG    + +++KTD +I G+  GSKL KAQ+LG+ ++ E++F
Sbjct: 603 TGKLEHFTRDGINTKILELGGKPGSSVTKKTDYLICGEKAGSKLSKAQELGIPVLTEQEF 662

Query: 715 LFLL 718
           L ++
Sbjct: 663 LDMI 666


>gi|304390721|ref|ZP_07372673.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304325604|gb|EFL92850.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 799

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 162/514 (31%), Positives = 265/514 (51%), Gaps = 54/514 (10%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI----ILDSEYDALKRRCD 56
           +KK+  IP      E A  + + L  +I      YY  +       + D+EYDAL  +  
Sbjct: 2   VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQTPETGVTRLSDAEYDALFVQLQ 55

Query: 57  AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIY 115
            +  A+PDL   + P   +   G   N   F   H +  + S++ +++  ++  +  R+ 
Sbjct: 56  LLEAAYPDLVTPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWWARVE 115

Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP- 174
           +  + +D      + E K+DG  +++ Y  G     A RGDG +GEDV+  ++ I T+P 
Sbjct: 116 KSLEGQD---FSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIATVPV 172

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233
           R+   N+PE++E+RGEVY+   DF A+N      G K +ANPRNAA+G L++ +P     
Sbjct: 173 RLSGENVPELVEIRGEVYLPLADFAAMNAARERDGEKLFANPRNAATGSLKQKDPVQAAK 232

Query: 234 RYLNFFVHGLGK-------------TSEIFAKGQYEMLQKMRCLGF---PVNNGVRQA-- 275
           R L F  HG+G+             T E F    YE+L+          P + G+  A  
Sbjct: 233 RPLAFLAHGVGEVRWADPGAAAHLETQEDF----YELLESWGLHSVRETPASLGMSLAGI 288

Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
           ++   I +  ++M + R    + IDG+V KVD F+ +  LG  AR+PRW  ++KF  ++ 
Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            TRLL I++Q+GRTG +TP   +E V + G+ ++ ATLHN         + +V R  +D+
Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHN---------AKEVAR--KDV 397

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           R GD V++++AG++IP+++  +++ R      +  P  CP C + +      K G +   
Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRPAGLPEWVMPDTCPSCGTELGAQ---KEGDI--D 452

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            RC     C AQ  ERL H  SR+A +IEGLG++
Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEE 486



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 34/266 (12%)

Query: 466 AQQLERLKH-FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524
           A Q E L+   V R+     G   QQ+ FF+    P            L +  Q +T + 
Sbjct: 552 ALQPEDLRDVMVWREIPGTGGRDWQQVRFFWAKPRP------------LPKAAQEATGQR 599

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF---- 580
                 G V V   ++ +   ++  L R + +L IRH+G   AR++A+ +++        
Sbjct: 600 FGPPVAGKV-VQTFFEQLQAAKSKELWRVLVALSIRHLGPVAARTIARQFVTMSALRVAS 658

Query: 581 ------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
                 A+ I  +IA +  DW +   VP       Q IV+ ++    + AV         
Sbjct: 659 AEQLGEAEGIGEVIAASIRDWFT---VPW-----HQEIVDAWEA-AGVGAVSKAEGASEA 709

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
           S+   + N++  +E   +V TG +    R  AQ  V   G   +  +S+KTD+++ G   
Sbjct: 710 SLA-GDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGKATGSVSKKTDLVVAGAGA 768

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           GSKL KAQ LG+ ++    F  LL++
Sbjct: 769 GSKLSKAQALGIPVIESAGFEALLEK 794


>gi|315655583|ref|ZP_07908481.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333]
 gi|315489647|gb|EFU79274.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333]
          Length = 794

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 163/518 (31%), Positives = 263/518 (50%), Gaps = 62/518 (11%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI----ILDSEYDALKRRCD 56
           MKK+  IP      E A  + + L  +I      YY  +       + D+EYDAL  +  
Sbjct: 1   MKKKTSIP------ESALAQHADLVDQIEAARTDYYDQTPETGVTRLSDAEYDALFVQLQ 54

Query: 57  AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIY 115
            +  A+PDL   + P   +   G   N   F   H +  + S++ +++  ++  +  R+ 
Sbjct: 55  LLEAAYPDLVTPDSPTQTVGGGGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWWARVE 114

Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP- 174
           +  + +D      + E K+DG  +++ Y  G     A RGDG +GEDV+  ++ I T+P 
Sbjct: 115 KSLEGQD---FSVSAEVKVDGLAMSLTYLHGALTVGATRGDGFTGEDVTENVKTIATVPV 171

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233
           R+   N+PE++E+RGEVY+   DF A+N      G K +ANPRNAA+G L++ +P     
Sbjct: 172 RLSGENVPELVEIRGEVYLPLADFAAMNAIRERDGEKLFANPRNAATGSLKQKDPVQAAK 231

Query: 234 RYLNFFVHGLGK-------------TSEIFAKGQYEMLQKM---------RCLGFPVNNG 271
           R L F  HG+G+             T E F    YE+L+             LG P+   
Sbjct: 232 RPLAFLAHGVGEVRWNDPGAAAHLETQEDF----YELLESWGLHSVRETPASLGLPLAG- 286

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
               +T   + +  ++M + R    + IDG+V KVD F+ +  LG  AR+PRW  ++KF 
Sbjct: 287 ---MHTLAEVHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFP 343

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++  TRLL I++Q+GRTG +TP   +E V + G+ ++ ATLHN         + +V R 
Sbjct: 344 PEEVHTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHN---------AKEVAR- 393

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +D+R GD V++++AG++IP+++  +++ R      +  P  CP C + +      K G 
Sbjct: 394 -KDVRPGDTVVLRKAGDIIPEILGPVISLRPAGLPEWVMPDTCPSCGTELGAQ---KEGD 449

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           +    RC     C AQ  ERL H  SR A +IEGLG++
Sbjct: 450 I--DLRCPNQSGCPAQITERLIHVGSRYALDIEGLGEE 485



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 102/256 (39%), Gaps = 37/256 (14%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            V R+     G   QQ+ FF+    P            L +  Q +T +       G V 
Sbjct: 561 MVWREIPGTAGRDWQQVRFFWAKPRP------------LPKSAQEATGQRFGPPVAGKV- 607

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----------AQEI 584
           V   ++ +   ++  L R + +L IRH+G   AR++A+ + +               + +
Sbjct: 608 VQTFFEQLQAAKSKELWRVLVALSIRHLGPVAARTIARQFATMSAIRAASVEQLGEVEGV 667

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
             +IA +  DW +   VP   +I+               AV      + P++        
Sbjct: 668 GEVIAASIHDWFT---VPWHQEIVDAWEAAGVGAAGQADAVSGTPLALEPTL-------- 716

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
              +   +V TG +    R  AQ  V   G   +  +S+KTD+++ G   GSKL KAQ L
Sbjct: 717 ---DGLTVVITGNVPGYTRESAQLAVEARGGKATGSVSKKTDLVVAGAGAGSKLAKAQAL 773

Query: 705 GVKIMNEEQFLFLLQQ 720
           G+ ++    F  LL++
Sbjct: 774 GIPVIESAGFEALLEK 789


>gi|163784741|ref|ZP_02179548.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879989|gb|EDP73686.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 414

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 159/422 (37%), Positives = 231/422 (54%), Gaps = 38/422 (9%)

Query: 2   KKRQL--IPIEALSI-EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           K RQL  I IE L   E A K ++ L + I YHD  YY  + P+I D EYD L     +I
Sbjct: 13  KTRQLLKISIEDLKTKEDAEKIINDLREVIKYHDWKYYVLANPVISDYEYDKLFHLLVSI 72

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
              +P+L  ++ P     ++   +     KV H  P LSLE  +N EDLR F  R+    
Sbjct: 73  EKKYPELITADSPT---QRVPSGLIKEFPKVKHLAPMLSLENSYNEEDLRDFDRRVKEI- 128

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
                + I +++EPK DG  I + YE   FV  A RGDG  G+D++  ++ I TIP  LS
Sbjct: 129 --TGLDEIEYSVEPKFDGAGIALVYENNLFVRGATRGDGAVGDDITPNLKVIRTIP--LS 184

Query: 179 LNIPE----IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233
            +  +     IE+RGEV I+K  F  +N E +  G   +ANPRNAA+G LR  NP ++  
Sbjct: 185 ADFEKYGIKTIEIRGEVLINKELFKKINQERLEEGLPLFANPRNAAAGSLRLQNPKEVAK 244

Query: 234 RYLNFFVHGLGKTSE--------IFAKGQYEMLQKMRCLGF--PVNNGVRQANTFHGIVS 283
           R L  FV+ +  T +           K   E ++ +  LGF  P    ++       ++ 
Sbjct: 245 RGLEAFVYQITYTVDENENNLLGTKLKKHSESIKMLYELGFKSPYKE-IKVCKNIDEVID 303

Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343
           Y N+ +  R + PY+IDG+V KV++ SL   LG  +  PRW I++KF  +QA+T+L+D+ 
Sbjct: 304 YCNQWQEKRDSYPYEIDGMVVKVNDISLYDTLGATSHHPRWAIAYKFQARQATTKLIDVV 363

Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403
            Q+GRTG +TPV +LEPV IGG ++++ +L NED+IK            +DIR+GD VLV
Sbjct: 364 FQVGRTGAITPVGKLEPVEIGGVVVSSVSLINEDFIK-----------EKDIRIGDLVLV 412

Query: 404 KR 405
           +R
Sbjct: 413 ER 414


>gi|315656502|ref|ZP_07909391.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493061|gb|EFU82663.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 799

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 162/514 (31%), Positives = 265/514 (51%), Gaps = 54/514 (10%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI----ILDSEYDALKRRCD 56
           +KK+  IP      E A  + + L  +I      YY  +       + D+EYDAL  +  
Sbjct: 2   VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQTPETGVTRLSDAEYDALFVQLQ 55

Query: 57  AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIY 115
            +  A+PDL   + P   +   G   N   F   H +  + S++ +++  ++  +  R+ 
Sbjct: 56  LLEAAYPDLVTPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWWARVE 115

Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP- 174
           +  + +D      + E K+DG  +++ Y  G     A RGDG +GEDV+  ++ I T+P 
Sbjct: 116 KSLEGQD---FSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIATVPV 172

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233
           R+   N+PE++E+RGEVY+   DF A+N      G K +ANPRNAA+G L++ +P     
Sbjct: 173 RLSGENVPELVEIRGEVYLPLADFAAMNATRERDGEKLFANPRNAATGSLKQKDPVQAAK 232

Query: 234 RYLNFFVHGLGK-------------TSEIFAKGQYEMLQKMRCLGF---PVNNGVRQA-- 275
           R L F  HG+G+             T E F    YE+L+          P + G+  A  
Sbjct: 233 RPLAFLAHGVGEVRWADPGAAAHLETQEDF----YELLESWGLHSVRETPASLGLSLAGI 288

Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
           ++   I +  ++M + R    + IDG+V KVD F+ +  LG  AR+PRW  ++KF  ++ 
Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            TRLL I++Q+GRTG +TP   +E V + G+ ++ ATLHN         + +V R  +D+
Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHN---------AKEVAR--KDV 397

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           R GD V++++AG++IP+++  +++ R      +  P  CP C + +      K G +   
Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRPAGLPEWVMPDTCPSCGTELGAQ---KEGDI--D 452

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            RC     C AQ  ERL H  SR+A +IEGLG++
Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEE 486



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 34/266 (12%)

Query: 466 AQQLERLKH-FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524
           A Q E L+   V R+     G   QQ+ FF+    P            L +  Q +T + 
Sbjct: 552 ALQPEDLRDVMVWREIPGTGGRDWQQVRFFWAKPRP------------LPKAAQEATGQR 599

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF---- 580
                 G V V   ++ +   ++  L R + +L IRH+G   AR++A+ +++        
Sbjct: 600 FGPPVAGKV-VQTFFEQLQAAKSKELWRVLVALSIRHLGPVAARTIARQFVTMSALRVAS 658

Query: 581 ------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
                 A+ I  +IA +  DW +   VP       Q IV+ ++    + AV         
Sbjct: 659 AEQLGEAEGIGEVIAASIRDWFT---VPW-----HQEIVDAWEA-AGVGAVSKAEGASEA 709

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
           S+   + N++  +E   +V TG +    R  AQ  V   G   +  +S+KTD+++ G   
Sbjct: 710 SLA-GDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGKATGSVSKKTDLVVAGAGA 768

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           GSKL KAQ LG+ ++    F  LL++
Sbjct: 769 GSKLSKAQALGIPVIESAGFEALLEK 794


>gi|331002925|ref|ZP_08326438.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330413218|gb|EGG92592.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 650

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 205/699 (29%), Positives = 352/699 (50%), Gaps = 80/699 (11%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY  +  I+ + EYD L     A+     ++  S   N P   +G E+   L K  H  
Sbjct: 20  SYYVDAVEIMPNIEYDKLYDELLALEKE-TNVVLS---NSPTQNVGYEIAGELPKKAHES 75

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL+K  ++ DL+ +++          DN    +   K+DG  I + Y  G+   A  
Sbjct: 76  PMLSLDKTKSVADLKSWLS----------DNKALLSW--KMDGLTIVLTYRNGELAEAVT 123

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RG+G  GE ++   +    IP  L +     + +RGE  I  +DF  +ND  I      Y
Sbjct: 124 RGNGTIGEVITNNAKNFQNIP--LKIEFKGELILRGEAVIKYSDFKRIND-AIEDADAKY 180

Query: 214 ANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPV 268
            NPRN  SG +R+LNP  IT+    Y N F   + +  ++ F   + +  + ++  GF V
Sbjct: 181 KNPRNLCSGSVRQLNPA-ITKARMVYCNIF--NVVRAEDMDFENSKAKQFEWVKNEGFDV 237

Query: 269 -NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
               +  +      ++ + E K + + +P D  GLV  +D+ +L ++LG  ++ PR  ++
Sbjct: 238 VEYKITDSKNIESDIAEF-ESKIVDNDIPSD--GLVLLLDDIALGERLGSTSKFPRNAMA 294

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
            K+++++ +T+L  I+    RTG++ P+A  EPV + G  ++ A+LHN    + L     
Sbjct: 295 FKWSDERQNTKLKYIEWSPSRTGLINPIAVFEPVELEGTTVSRASLHNVSIFEDL----- 349

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSRVVRDL 445
            M G     VGD + V +A  +IP+V      E    +     P  CP C  Q+ V +D 
Sbjct: 350 -MLG-----VGDEISVYKANMIIPQVY-----ENFTKSNTEKIPDVCPACGSQTTVKKDN 398

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
           + K         CT    C  + +++     SRDA NI+GL +  L+ F       F I+
Sbjct: 399 DSK------VLLCTNP-DCQIKHIKQYALMASRDALNIDGLSESTLEKFLS---KGF-IK 447

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
             +D+F L R +     +I N+ GFG  S   L  +I++ R+ ++ RF++SLGI  +G+ 
Sbjct: 448 SDSDLFNLSRYKD----EIINMEGFGKRSYEKLIAAIDEARHTNMARFLYSLGITGIGSA 503

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A+ +A+Y      F  +++ II  + DD   L+ +  +G+++A +IVEF+ N +NI  +
Sbjct: 504 NAKMIARY------FDNDLDRIINASKDD---LLEIEGIGEVLANSIVEFFGNEKNIENI 554

Query: 626 EALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSR 683
           ++L + +   I   E++ + +I   K  V TGT++    R++ +E + + G  VS  +S 
Sbjct: 555 KSLRELL---IFETEESETKDIFAGKVFVITGTVEHFSNRNELKEIIEKNGGKVSGSVSS 611

Query: 684 KTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           KT+ +I  D     SK +KA++LGV+I++EE FL LL++
Sbjct: 612 KTNFLINNDTTSNSSKNKKAKELGVEIISEEDFLKLLEE 650


>gi|326792059|ref|YP_004309880.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427]
 gi|326542823|gb|ADZ84682.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427]
          Length = 649

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 198/700 (28%), Positives = 336/700 (48%), Gaps = 84/700 (12%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL------NKIGGEMNLSLF 87
            Y Q  + ++ + EYD            + +L R E+  G +       K+G E+  SL 
Sbjct: 20  AYEQEDREVMSNYEYDKF----------YDELKRLEEETGIILAGSVTQKVGYEIASSLP 69

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K+TH    LSL+K   +  L+ F+                  L  K+DG  I   YE+G+
Sbjct: 70  KITHPKRMLSLDKTKEVSKLKAFLGNQEGL------------LSWKLDGLTIVCIYEEGQ 117

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE+++   +    +P  L+++  E + +RGE  I+ +DF  +N E + 
Sbjct: 118 LVSAVTRGNGSVGEEITNNAKTFKELP--LAIDYKERVVLRGEAIITYSDFERIN-EGLG 174

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
              + Y NPRN  SG +R+LNP  IT  R +  +   L +     A  + E L+ ++  G
Sbjct: 175 EKEEKYKNPRNLCSGSVRQLNP-QITAGRNVRLYAFTLVEGGPDVAT-KAEQLEWLKARG 232

Query: 266 FPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           F V       AN     V+Y+ E  +I+S  P+  DGLV   ++      LGE A+ P+ 
Sbjct: 233 FKVVEYKHVTANNIEETVAYFAE--AIKSQ-PFASDGLVLTYNDREYSASLGETAKFPKD 289

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I+ K+ ++   T+LL+++    RTG++ PVA  EPV I G  +  A++HN   ++ L  
Sbjct: 290 AIAFKWQDEIVETKLLEMEWNTSRTGLINPVAIFEPVEIEGTTVERASVHNLSILEEL-- 347

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSRVV 442
                     + +GD + V +A  +IP++      E    +     P  CP+C   + ++
Sbjct: 348 ---------KLGIGDTIKVYKANMIIPQIA-----ENLTQSANVEIPEVCPVCGAHTMIM 393

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           ++   KT  L+  +       C AQ+L  L HF +RDA NIEGL +  ++   +      
Sbjct: 394 KEKEAKT--LICPNS-----NCKAQRLRALAHFTTRDAMNIEGLSEATIEKLLEK----G 442

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            ++    ++ L R +     ++  + G G  S   L  SINK R+++L  F+++LGI  V
Sbjct: 443 YLKDFTSLYHLDRYE----AEVIEMEGLGKKSFDKLIKSINKSRDVALANFVYALGIAQV 498

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   A+ + K+      F  E++ ++      +  LI +  VG +IA+   E++    N 
Sbjct: 499 GLGTAKLICKH------FNNELDEMMKAR---YEQLITIDGVGPVIAKEFEEYFNLEENK 549

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAIL 681
             +E L+KE+   +     +  S I NK  V TG +   + R + Q  +  LG  V+  +
Sbjct: 550 AMLETLVKEIHFKLENVTISQESPILNKTFVITGDVNYFKNRKELQAKIETLGGKVTGSV 609

Query: 682 SRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S+ TD +I  D+    SK +KA++LG+ I+ E QFL +++
Sbjct: 610 SKNTDYLINNDSESNSSKNKKAKELGIPILTEAQFLEIIE 649


>gi|321309600|ref|YP_004191929.1| DNA ligase [Mycoplasma haemofelis str. Langford 1]
 gi|319801444|emb|CBY92090.1| DNA ligase [Mycoplasma haemofelis str. Langford 1]
          Length = 662

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 194/702 (27%), Positives = 340/702 (48%), Gaps = 60/702 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE  RKEL  LE+        YY    P   D  YD   R    + H +P+  ++ED   
Sbjct: 7   IENLRKELKDLEE-------AYYA-GDPKESDEVYDFKLRTLLNLEHKYPEY-KTED--S 55

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P N++G  +N    KV H  P LSL   +N E+L+ F  +      +K+   + + LEPK
Sbjct: 56  PSNRVGFYLNPENIKVHHDFPMLSLNNAFNNEELQSFFNQC-----EKERGELEYFLEPK 110

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I++ Y KG    A  RGDG  GED+++ I  I +IP  + +   + I +RGE+YI
Sbjct: 111 VDGASISLIYRKGYLHQAISRGDGEIGEDLTSKILQINSIP--IKIESEDDITIRGEIYI 168

Query: 194 SKNDFLALN-DEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251
            K++F A   DE  +   K +AN RN  +G LR     +I++  L    + + +  E+  
Sbjct: 169 RKSNFEAQRYDESSS---KSFANHRNFVAGTLRLKKSEEISKKGLRVKAYSIVRAEEVGI 225

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQ--ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             Q ++++++R LG   ++      +     I S+    + I+ T     DGLV KV+E 
Sbjct: 226 DKQSQIIERIRELGLESHDPKETLISGNKEEIYSFIKAFEDIKKTSDIPYDGLVIKVNET 285

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S  + +G  ++ P+W I++K+      ++LL I   +GRTG +T  A++EPV + G+ + 
Sbjct: 286 SKWEDIGYTSKFPKWAIAYKYPSLVKESKLLKIIPTVGRTGKITYSAQVEPVELDGSTVQ 345

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN +YI  L           D+RVGD V + ++GE++P+++      R  D + + 
Sbjct: 346 FATLHNANYITEL-----------DLRVGDYVSIYKSGEIVPRIIGFSRERRSEDLERWI 394

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
             + CP C S ++   N      ++   C     C  ++  +  +F +R   NIEGL   
Sbjct: 395 PSTHCPSCNSELITKQN------LSTQYCPNK-DCLEKKYAQFTYFSARGMANIEGLS-- 445

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    K      S+ I  ++  + +  Q   T +   L   +  +  L  SI+K RN  
Sbjct: 446 -IHIIMK----LHSLGILQNLDDIYKIHQHRDTILNADLRIKEKLLNKLIASIDKSRNRE 500

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             + +  LGI  +G E+A  +  ++ S       I+ +++ + ++ +S   +  +G+  A
Sbjct: 501 SHKILCGLGIEFIGEEVANLIFGHFGS-------IDEVLSASKEELMS---IDGIGEKCA 550

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++I+++     NI  V+ L ++         + ++S +  K++V TG  +  +   +   
Sbjct: 551 ESIIQWSSQQENIDLVKRLKEQGLFKNHSTFEVINSFVRGKRVVITGKFKISREELSSRL 610

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
               G  +   +S K D +I G+  GSKL KA+ L ++I+ E
Sbjct: 611 RNNYGVKIVGNISSKVDYLIAGEGAGSKLIKAKDLNIQILTE 652


>gi|225419696|ref|ZP_03761999.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme
           DSM 15981]
 gi|225041660|gb|EEG51906.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme
           DSM 15981]
          Length = 654

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 222/726 (30%), Positives = 348/726 (47%), Gaps = 108/726 (14%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73
           KEL SL   +S     YYQ S+ I+ + EYD L          + +L   E   G     
Sbjct: 9   KELVSL---LSKAGKAYYQESREIMSNFEYDRL----------YDELTALERETGVTLSG 55

Query: 74  -PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G E+   L K TH  P LSL+K  ++EDL+ ++          D   +   L  
Sbjct: 56  SPTKRVGYEVLSELPKETHESPMLSLDKTKSVEDLQAWLG---------DQKGL---LSW 103

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGE 190
           K+DG  I + Y+ G  V A  RG+G  GE ++   R    IP    LNI    ++ +RGE
Sbjct: 104 KMDGLTIVLTYDGGTLVKAVTRGNGEIGEVITPNARVFANIP----LNIAHKGLVVLRGE 159

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
             I  +DF  +N+E+  V  K Y NPRN  SG +R+LN + IT  R ++F    L +   
Sbjct: 160 AVILYSDFRRINEEIEDVDAK-YKNPRNLCSGSVRQLN-SQITAERNVHFEAFSLVRAEG 217

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQ--ANTFHGIVSYYNEMKSIRSTLPYDI--DGLV 303
           + F   +    + ++  GF V +  R+  A T    V  + +     +   YDI  DGLV
Sbjct: 218 VDFENSRKRQFEWLKSQGFEVVD-YREVTAETLPQAVQEFAD-----AVEGYDIPSDGLV 271

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
              D+ +  + LG  A+ PR  I+ K+ ++   T++  I+    RTG++ PVA  EPV +
Sbjct: 272 LLFDDIAYGESLGRTAKFPRNSIAFKWQDEIRETKMRYIEWSPSRTGLINPVAVFEPVEL 331

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE--R 421
            G  ++ A++HN   ++GL+   +           DR+ V +A  +IP++ D +     +
Sbjct: 332 EGTTVSRASVHNISILEGLELGEE-----------DRITVYKANMIIPQIADNLTRSGVK 380

Query: 422 HPDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           H        P  CP+C     +R +N      V +  C     C A++++     VSRDA
Sbjct: 381 H-------IPEQCPVCGGATEIRQVND-----VRSLYCINP-DCQAKKIKSFTLLVSRDA 427

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NI+GL +  L+ F      A  I   ADIF L R Q+     I  + GFG  S  NL  
Sbjct: 428 LNIDGLSEATLEKFIG----AGFIHEYADIFHLDRHQEA----IVEMEGFGQKSYDNLVA 479

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ K  + +L R I+ LGI  +G   A++L ++      F  E  N+   + ++   L+ 
Sbjct: 480 SVAKAADTALPRVIYGLGIAGIGLANAKALCRH------FGYEFENMRKADEEE---LVA 530

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE----NKKLVFTG 656
           V  +G ++A+A +E++ +  N  AV+ L  E++      EK V  E E     K  V TG
Sbjct: 531 VDGIGAVLAKAWMEYFSSEANNEAVDHLFAELTI-----EKEVVEETEQIFAGKTFVITG 585

Query: 657 TLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQ 713
           +L+    R + QE +   G   +  +S KT  +I  D  +P SK +KA+ LGV I+ EE+
Sbjct: 586 SLEHFGNRKELQELIESKGGKAAGSVSAKTSYLINNDSLSPSSKNKKAKDLGVPIITEEE 645

Query: 714 FLFLLQ 719
           FL +L+
Sbjct: 646 FLRMLE 651


>gi|295090337|emb|CBK76444.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10]
          Length = 676

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 202/716 (28%), Positives = 331/716 (46%), Gaps = 80/716 (11%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------ 73
           ++  L Q ++ H   YY  + P I D+EYD +          +  L R E+  G      
Sbjct: 17  KIKELVQTLNRHRHAYYNLNAPEISDAEYDRM----------YDQLERLEEETGIIYSNS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G      L KV H  P LSL+K   +EDL       YRF      N     L  K
Sbjct: 67  PTQTVGYPPVSELKKVPHPHPLLSLDKTKQVEDL-------YRFC-----NGHAALLMLK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  + + YE G+ + AA RGDG  GE+++  I     IP  L+++  E + V GE +I
Sbjct: 115 LDGLTVKLTYENGRLMEAATRGDGEIGEEITHNIPTFENIP--LTVSYKERLVVTGEAFI 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF----VHGLGKTSE 248
            K DF  LN  +     KPY N RN A+G +R L+P +   R + F     + GL +   
Sbjct: 173 RKKDFERLNLTIRDKDGKPYKNARNLAAGSVRSLDPENCKGRCVTFLPFNVLEGLDEGEH 232

Query: 249 IFAKGQYEMLQKMRCLGF------PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
             +  + E L ++  LGF      P+N            +    ++K     L   IDG+
Sbjct: 233 --SNSREERLYQLSKLGFGSCPYIPLNPDQVSPEYLELRI---QDLKEKAEMLDLPIDGM 287

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V   D+ +     G      +  ++ KF ++   T L  I+    R G L PVA  + V+
Sbjct: 288 VLIFDDLAYSASRGRTGHHYKDGLAFKFEDETYETTLQSIEWTPSRFGELAPVAVFDTVD 347

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I G  ++ ATLHN  +I+ L+           +  G R+LV +   +IP + D +   R+
Sbjct: 348 IDGCSVSRATLHNLTFIRELE-----------LVSGCRILVSKRNMIIPHIEDNLDRGRY 396

Query: 423 PDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            DA P    + CP C +   +R    + G+++    C+   +C  QQL++  HFV R A 
Sbjct: 397 QDAAP----AICPCCGAPTELRRKTAENGRIIETVHCSNP-SCEIQQLKKFVHFVCRKAM 451

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NIEGL +  L+ F         +R   DI+ L + +     +I  + GFG+ S   L+++
Sbjct: 452 NIEGLSEATLEKFLN----LGYLRTFHDIYHLDQHRD----EIIRLDGFGEKSFDRLWNA 503

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   RN +  R++ S+ I  VG   +R L         F+  +++  A   DD+    ++
Sbjct: 504 IQASRNTTFVRYLISMDIPMVGRTKSRVLDTI------FSGNLDDFRAAAIDDY-DFSQL 556

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQ 659
              G  + + I +++ +  N+   + L KE +    + E  ++ +     K +V TG L+
Sbjct: 557 EDFGATLNRNIHDWFADEENLALWDTLQKEFTFEERKEETIMAKDNVFAGKTIVATGKLE 616

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
              R +  + + ++GA   + ++ KTD +I G+  GSKL KA+ LG+ I++E +FL
Sbjct: 617 NFTRSEINDKILEIGAKPGSSVTGKTDYLICGEKAGSKLAKAKSLGITILSEAEFL 672


>gi|283797409|ref|ZP_06346562.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1]
 gi|291074764|gb|EFE12128.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1]
 gi|295090074|emb|CBK76181.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10]
          Length = 684

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 198/697 (28%), Positives = 342/697 (49%), Gaps = 77/697 (11%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP---NGPLNKIGGEMNLSLFKVT 90
            YYQ S+ ++ + EYD L            +L R       N P   +G E+  SL K  
Sbjct: 46  AYYQESREVMSNFEYDRL-------YDELLELERETGTVFGNSPTQNVGYEVVSSLPKER 98

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H  P LSL K  ++E+L++++                  L  K+DG  I + YE+GK V 
Sbjct: 99  HESPMLSLNKTKSVEELKEWLGEQSGL------------LSWKMDGLTIVLTYEEGKLVK 146

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
           A  RG+G  GE ++   +    +P  +++     + +RGE  I  +DFL +N+E+  V  
Sbjct: 147 AVTRGNGEIGEVITNNAKTFVNVP--MTIPYKGQLVLRGEAVIRYSDFLKINEEIEDVDA 204

Query: 211 KPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGF- 266
           + Y NPRN  SG +R+LN +++T  R + FF   L     + F   + E    ++  GF 
Sbjct: 205 R-YKNPRNLCSGSVRQLN-SEVTAQRKVRFFAFSLVSADGVDFKNSREEQFLWLKSQGFE 262

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
            V   +  A+T    V+ ++E    ++ +P D  GLV   D+ +  + LG  A+ PR  I
Sbjct: 263 TVEYRLVTADTLEAAVASFSEAVE-KNDVPSD--GLVLLFDDIAYGQSLGRTAKFPRDSI 319

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           + K+A++   T L  I+    RTG++ PVA  EPV + G  ++ A++HN   ++ L    
Sbjct: 320 AFKWADEIQETTLSYIEWSASRTGLINPVAVFEPVELEGTTVSRASVHNISIMEAL---- 375

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV-VRDL 445
                  ++  GDR+ V +A  +IP++ D +      D      P  CP+C  +  VR +
Sbjct: 376 -------ELGEGDRITVYKANMIIPQIADNLTRSGVRD-----IPETCPVCGGKTEVRKV 423

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
           N      V +  CT    C A++++    F SRDA NI GL +  L+ F       F I 
Sbjct: 424 ND-----VKSLYCTNP-DCQAKKIKSFTLFTSRDALNIGGLSEATLEKFIAR---GF-IH 473

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
             ADIF L R ++    +I N+ GFG  S   L +++ +  + +L R ++ LG+  +G  
Sbjct: 474 EYADIFHLDRHEE----EIVNMEGFGKKSFDKLTEAVKRAADTTLPRVVYGLGVAGIGLA 529

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A+ L ++      F  + + +     ++   L  V  +G+++A A ++F+ + +N   V
Sbjct: 530 NAKMLCRH------FQYDFHAMRCAGKEE---LTAVDGIGEVLADAWIQFFADEKNNQMV 580

Query: 626 EALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSR 683
           + L++E++      E+   +E+ E    V TG+++  + R + QE +   G  V+  ++ 
Sbjct: 581 DRLMEELTIEAAPKEEGERTELFEGLVFVITGSVEHFKNRKEVQEIIESRGGKVTGSVTA 640

Query: 684 KTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           KT  +I  D  +  SK +KA++LG+ ++ EEQF+ +L
Sbjct: 641 KTSYLINNDAASNSSKNKKARELGIPVITEEQFIEML 677


>gi|281212695|gb|EFA86855.1| BRCT domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1835

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 217/771 (28%), Positives = 352/771 (45%), Gaps = 102/771 (13%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG--PLNK 77
           E+  +  EI  ++D YY  S+ +I D +YD L +R   +   F          G  PLN 
Sbjct: 58  EILKIRDEIKKYNDSYYNKSQSLISDYQYDMLFKRLATLESQFHQRFPHSKMLGQSPLNT 117

Query: 78  IGGEM---NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY--------RFWQKKDDNSI 126
           +G  +     S  KV HS+  LSL   ++IE+L+ F  RI                D+ I
Sbjct: 118 VGAPLPQSQSSKSKVEHSVRMLSLNNAYSIEELQTFERRIVADCLHESRGGGDGDGDHQI 177

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSAC--IRAIPTIPRVLSLNIPE- 183
            FTLE K DG  ++  YE GK V    RGDG  GEDV+ C  I     +PR L   +P  
Sbjct: 178 TFTLERKHDGIALSAIYEDGKLVRLVTRGDGIIGEDVTECGNIFINTGLPREL---LPGS 234

Query: 184 -------------IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
                          EVRGEV +SK   L +N          Y N RN  SGILR     
Sbjct: 235 SGGSSNNSPYKKGTFEVRGEVVLSKQQLLEINSSRAKANLPLYKNTRNTVSGILRAGRTI 294

Query: 231 -----DITRYLNFF----VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281
                D+ ++ +FF    V G    +      Q E L +++ LGF   + +    +   +
Sbjct: 295 GEFDKDLIKF-DFFAYQMVSGEESPTTTAITSQSESLAELKRLGFKCGD-IVAIRSLALV 352

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
             Y ++++  R +  +DIDG+V KVD   LQ++LGE  R+PRW +++KF   Q  T L +
Sbjct: 353 DRYIDQLEMERPSYKWDIDGIVIKVDSLELQRRLGETERAPRWAVAYKFGASQYLTTLNE 412

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           I +Q+GR+G +TPVA ++PV++ G  ++ ATL+N  ++K +           ++R+GDRV
Sbjct: 413 IVLQVGRSGKITPVAIVDPVDVHGVTVSRATLNNIQFVKRM-----------NLRLGDRV 461

Query: 402 LVKRAGEVIPKVV----------DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
           +++RAG+VIP +           D + N    D    +   F P C    +R    K  +
Sbjct: 462 VIERAGDVIPYLTRYIDENNADGDQVDNREEMDDTTLA-RLFNPQCNDGKIRCPCEKKLE 520

Query: 452 LVAA-----HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
           L  A     H C G   C+ Q   ++  FVS+D   + G+G  Q++        A  I  
Sbjct: 521 LFTADDSADHFCMGS-ECTLQLQGQILWFVSKDGMAMTGIGPSQVEALMA----AGLISD 575

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
             D+++L+ ++     ++  I GF    V N+ ++I   +    E  + +LGI   G   
Sbjct: 576 AGDLYSLKDKRD----QMLQIPGFNKKRVDNILEAIETSKQRPFESVLCALGIPGFGKSR 631

Query: 567 ARSLAKYYLSYQNFA----QEINNIIA-------------HNNDDWLSLIRVPLVGDIIA 609
            ++LAK + ++   +    ++I N +              H  D    L    LV  + +
Sbjct: 632 CKTLAKSFKTFDQLSNTSLEDITNRVQLGDLTTYQLYSFFHPYDKAQQLGIDSLVNKLKS 691

Query: 610 QAI-VEFYQN----PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
             I VE  +      ++  A +   +  +P+     K++   +  KK+V +GT     R 
Sbjct: 692 NGIGVEMNKQKSLKSKSTKAAQQSQQPSTPTSKPQNKSLLEMVAGKKVVVSGTFSIGSRD 751

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQF 714
           +    + Q GA   + +S  TD +IV   P  SK+++A+ L + I++E++ 
Sbjct: 752 EVVTILEQNGAKSQSKVSSATDYLIVSQKPSSSKVKQAESLNIPILSEQEL 802


>gi|217032016|ref|ZP_03437517.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128]
 gi|216946326|gb|EEC24932.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128]
          Length = 458

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 160/473 (33%), Positives = 242/473 (51%), Gaps = 37/473 (7%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +S+H   YY    PI+ D+ YD L +   A     P+   S   N P  K+G     S  
Sbjct: 18  LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGAITTNSFN 71

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+DG  + + Y+ GK
Sbjct: 72  KNSHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GE V+   + I  IP  ++ +    IE+RGEV ISK DF ALN E + 
Sbjct: 127 LVKATTRGNGLEGELVTNNAKHIANIPHFIAYDGE--IEIRGEVIISKKDFDALNQERLN 184

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                +ANPRNAASG LR+L+ ++IT  R L F   G+GK S  F   + E L  +  LG
Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F     +        I   Y+ +   R      +DG+V  VDE  +QK+LG   +SP++ 
Sbjct: 243 FSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVDELDIQKELGYTQKSPKFA 302

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA+I  ATLHN   I+     
Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMINRATLHNYSEIE----- 357

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  ++I + DRV+V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
                           L C A+  E L HF S+DA NI+GLG + ++  F+ +
Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK 455


>gi|269957188|ref|YP_003326977.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894]
 gi|269305869|gb|ACZ31419.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894]
          Length = 830

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 164/539 (30%), Positives = 262/539 (48%), Gaps = 75/539 (13%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L  + A++  + L   +      YY++  P++ D+EYDA      A+  A P LA    P
Sbjct: 11  LDEQAAQRRWAELRDLVEADQRAYYEHDSPLVSDAEYDARLHELAALEAAHPALAT---P 67

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++GG        V H    LSL+ ++++++LR +  R+ R     D   + +  E
Sbjct: 68  ESPTQRVGGAAASGFTTVEHVERMLSLDNVFSVDELRDWDARVARDLGAGD---VGYLAE 124

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
            KIDG  I + YE G+   AA RGDG +GEDV+     I  +P+ L     P ++EVRGE
Sbjct: 125 VKIDGLAIALLYEHGRLTRAATRGDGRTGEDVTVNALRIADVPQQLDGEGHPALVEVRGE 184

Query: 191 VYISKNDFLALND--------------------------EMIAVGRKP-YANPRNAASGI 223
           ++I    F  LN+                           + A+ R P +ANPRNAA+G 
Sbjct: 185 IFIPTASFTRLNELQEELRARVVEDTRARQGARFDEEKARLAALRRFPTFANPRNAAAGG 244

Query: 224 LRR-LNPTD-------ITRY--LNFFVHGLGKTSEIFAKGQYEMLQKMR-------CLGF 266
           LR+ L+  D       + R   L  +VHG+G     +  G++  L +           G 
Sbjct: 245 LRQQLDKKDGLERDAGLARIESLRLYVHGIGALQ--WEAGEHAELGRQSDAYSYFATWGL 302

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           PV+   R  N    ++       + R  + +++DG+V KVD    Q++LG  +R+PRW I
Sbjct: 303 PVSPHNRVVNGIDAVIEMIEHFGAHRHDIEHELDGIVVKVDALPDQQRLGATSRAPRWAI 362

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K+  ++ +TRLL I + +GRTG  TP A +EPV + G+ +  ATLHN+D ++      
Sbjct: 363 AYKYPPEEVNTRLLAIQVGVGRTGRATPYAVMEPVLVAGSTVRQATLHNQDVVR------ 416

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP---FSFPSFCPICQSRVVR 443
                 + +RVGD V++++AG+VIP+++  +      D  P   F  P+ CP C +    
Sbjct: 417 -----AKGVRVGDVVVLRKAGDVIPEILGPVPAAAD-DGFPRHDFVMPAQCPECGT---- 466

Query: 444 DLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            L P K G +    RC    +C AQ   R++H  SR   ++EGLG+       +  +PA
Sbjct: 467 PLRPMKEGDV--DLRCPNARSCPAQVRGRVEHIGSRGGLDVEGLGEVAAAALTQPLEPA 523



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 24/223 (10%)

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           +  T   R++    K   + G    S   L D +++ +   L R + SL IRHVG   AR
Sbjct: 597 ETMTPAERRKAGIRKDHPVYGPAK-SAQVLLDELDRAKTKDLWRQLVSLNIRHVGPVAAR 655

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           +LA ++ S       ++ I A ++++   L  V  VG +I   +  ++    ++  V++ 
Sbjct: 656 ALADWFGS-------LDAIRAASSEE---LAAVEGVGPVIGAELQAWFDVDWHVDIVDSW 705

Query: 629 LK-------------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            +             E   +           +    +V TG+L    R  A+E +   G 
Sbjct: 706 TRAGVRFATPGHPGPEAMAAQAAAGAAPQGPLAGLTVVVTGSLDGFTRDGAKEAIIAAGG 765

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  +S+KTD ++VG+N GSK  KA++LG+ +++E  F+ LL
Sbjct: 766 KSAGSVSKKTDYVVVGENAGSKAAKAEELGLPVLDEAGFVALL 808


>gi|331270899|ref|YP_004385610.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925]
 gi|329127291|gb|AEB77235.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925]
          Length = 649

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 194/717 (27%), Positives = 348/717 (48%), Gaps = 79/717 (11%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED--- 70
           +E   + +  L +E++   D YY   + ++ D E+D            F  L + E    
Sbjct: 1   MEDKTQRVKELIKELNQASDKYYNSDETVMTDKEWD----------DKFDKLKQLEQDTG 50

Query: 71  ---PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               N P  K+G E+   L KV H+IP  SL K  +I DL KFI            N + 
Sbjct: 51  IILSNSPTQKVGYEVKSKLDKVVHNIPLKSLGKTKSIGDLNKFIGS----------NEVI 100

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
                K DG    + YE G+ +  + RG+G  GED++  ++    IP  L ++    +++
Sbjct: 101 IM--DKGDGLTCELIYENGQLLQGSTRGNGEIGEDITHNVKTFKNIP--LQIDFKGYLKL 156

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246
            GE  I   DF  +N ++       Y+N RN  +G +R+L+      R + F+   L + 
Sbjct: 157 SGESVILDEDFELINSKL--DDEDKYSNSRNLVAGSVRQLDSNICDKRNVKFYAFSLLEC 214

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             +    + E L+ +  LGF     ++  N+   +    ++M+       + IDGLV+  
Sbjct: 215 EGVDFITKEEQLEFLSRLGFETIEYIKYNNS-EDLEQVISKMQKSAYEKGFPIDGLVFAY 273

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +       LG+    P   I++KF +++  T+ +  + Q+ RTG++ PVAR +PV I G+
Sbjct: 274 NNIEYANLLGDTLHHPLHSIAYKFYDEEYETQYITTEWQVSRTGMINPVARFKPVEIEGS 333

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++  ATLHN DY + L            +  GD + V +A +VIPKV+    N+   + +
Sbjct: 334 VVERATLHNLDYFEDL-----------KLGQGDTIKVIKANQVIPKVMS---NDTMSNTE 379

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP+C  +    L  KT +++  +       CSA+ + R+ H+ SR+A NI+GL
Sbjct: 380 I--IPTECPVCGGKTEEKL-LKTARVLICNNP----ECSAKHISRITHYCSRNAMNIDGL 432

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++ ++ F         ++   DI+ L++ ++    +I NI G G  S  N+ ++I K +
Sbjct: 433 SEKTIEKFVN----LGYLKDIDDIYKLEQYKE----EIINIDGLGTKSYNNMIEAIEKSK 484

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              LE FIF+LG+ +VG   A+ L K + S       I+ I+   N +   +  +  +GD
Sbjct: 485 YCKLENFIFALGVPNVGLGTAKLLVKQFKS-------IDKIM---NCNLTEIYGIEGIGD 534

Query: 607 IIAQAIVEFY-QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RH 664
           ++   I  ++  N  +I  V  LLK +       +++ S+++E K  V TG +   + R+
Sbjct: 535 VVGSEIYNYFIINTDSINLVNKLLKFI--DFEEVKESSSNKLEGKTFVITGDVHVFKNRN 592

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +  + ++G  V+  +S+KTD +I  D  +  SK +KA+ L + I+ EE+F+ +++
Sbjct: 593 EVKAKIEEMGGKVTGSVSKKTDYLINNDVESTSSKNQKAKDLNIPIITEEEFVEMIK 649


>gi|298712196|emb|CBJ33067.1| DNA ligase, NAD-dependent [Ectocarpus siliculosus]
          Length = 1170

 Score =  240 bits (612), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 172/468 (36%), Positives = 241/468 (51%), Gaps = 100/468 (21%)

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPE 183
           + F  EPKIDG    + YE G+FV AA RGDG  GEDV+A   A+    IP  L L+   
Sbjct: 394 LCFVAEPKIDGLTCALLYEDGRFVRAATRGDGERGEDVTANALALGDAVIPHHLPLSSAA 453

Query: 184 II--------------------------------------EVRGEVYISKNDFLALNDEM 205
            +                                      EVRGEV++S   F  LN+E 
Sbjct: 454 AVAEGADGGAVPTREAEAAAAAAAAAERAPSSPVVPRGRFEVRGEVFMSDEAFERLNEER 513

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHG-------------------LG 244
            A G   +A+ RNAA+G LR+L+P  +TR   L FF +G                   +G
Sbjct: 514 EAEGLPAFASARNAAAGSLRQLDPA-VTRRRGLRFFAYGAAVGQERGRSASEEAAAAAVG 572

Query: 245 KTSEIFAKG-QYEMLQKMRCLGFPVNNGVRQANTFHG--IVSYYNEMKSIRSTLPYDIDG 301
             +   A G Q  +L  +   GF V    R   T     +V ++  +   RS+L Y +DG
Sbjct: 573 GDALASAFGTQDALLTALEGWGFEVAR-PRLPPTVSADELVEFHRRLARERSSLGYAVDG 631

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYK+D+ +LQ++LG  AR+PRW ++HKF  ++  T L +I IQ+GRTG LTPVA LEPV
Sbjct: 632 VVYKLDDLALQERLGASARAPRWAVAHKFGAEEGETVLSEIVIQVGRTGALTPVAVLEPV 691

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GGA ++ ATLHN   ++ L            +R GDRV V+RAG+VIP+V+  + +  
Sbjct: 692 LLGGATVSRATLHNAREVEEL-----------GLRPGDRVKVRRAGDVIPQVLG-LASPP 739

Query: 422 HPDAQP----------FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           HPD+            F+FP+ CP C + VV++ +       A  RC  GL+C AQ +ER
Sbjct: 740 HPDSSSAGEGDDDSARFAFPTCCPACGTPVVKEEDK------AVTRCPAGLSCPAQAVER 793

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
           LKHFVS+ AF+I+GLG  +L   ++    A  +R P D+  L  R QT
Sbjct: 794 LKHFVSKGAFDIQGLGPARLLELYE----AGIVRSPVDVLRL--RSQT 835



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 117/230 (50%), Gaps = 39/230 (16%)

Query: 524  IENILGFGDVSVTNLYDSINKRRN-ISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNF- 580
            +E   G+G +S  N+ D++++ ++ +SL RFI+SLG+  VGA +A  +A+ +   ++ F 
Sbjct: 933  LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIYSLGVPLVGARMAEVIAEEFNGEFEAFW 992

Query: 581  -----------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR-NICAVEAL 628
                        + +N           +   +  +G  +  +++ F +    N   VEAL
Sbjct: 993  GALTRAGLPTPPKVVNGTGPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEAL 1052

Query: 629  LKEVSPSIGRHEKNVSSE------------------------IENKKLVFTGTLQKIQRH 664
              EV  S     ++                            +E K +VFTGTL +++R 
Sbjct: 1053 ASEVRFSARARRRHAGGGEWMVALDAVVRKGGGGGSAGGGAWVEGKTVVFTGTLTRMKRT 1112

Query: 665  KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            + QE   +LGA V+  +SRKTD+++VG NPG KLEKA++LGV++++EE++
Sbjct: 1113 ETQEAARELGARVTGSISRKTDMVVVGLNPGGKLEKARELGVEVVSEEEW 1162



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           I+ HD  YY    P + D+EYDAL+ R   I  AFP L RS+ P+
Sbjct: 191 IAAHDVRYYLEDVPSVTDAEYDALRLRNGEIEAAFPSLVRSDSPS 235


>gi|210617503|ref|ZP_03291606.1| hypothetical protein CLONEX_03828 [Clostridium nexile DSM 1787]
 gi|210149290|gb|EEA80299.1| hypothetical protein CLONEX_03828 [Clostridium nexile DSM 1787]
          Length = 653

 Score =  240 bits (612), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 212/716 (29%), Positives = 352/716 (49%), Gaps = 75/716 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPN 72
           +EQ ++ +  L Q ++     YYQ +  I+ + EYD L     A+       LA S    
Sbjct: 1   MEQKKQRMQELVQLLNEAGKAYYQGTAEIMSNYEYDKLYDELLALEKELGITLASS---- 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G E+   L K  H  P LSL+K   +  L++F+       QK         +  
Sbjct: 57  -PTVNVGYEVLSELPKERHEKPMLSLDKTKEVSKLKEFLGS-----QKA-------RISW 103

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  I + Y+ G    A  RG+G  GE ++   +    +P  +S    E+I +RGE  
Sbjct: 104 KLDGLTIVLTYQNGTLQKAVTRGNGEVGEVITNNAKVFKNLPLHISYQ-GELI-LRGEAI 161

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI- 249
           I   DF  +N+E+  V  K Y NPRN  SG +R+LN  +IT  R + FF   L K  ++ 
Sbjct: 162 IGYRDFEKINEEIEDVDAK-YKNPRNLCSGSVRQLN-NEITAKRNVKFFAFSLVKADDVD 219

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           F   +   ++ ++  GF V  G    A T    V +++E K   +  P D  GLV   D+
Sbjct: 220 FKNSRIYQMEWLKEQGFEVVEGYEVTAGTIEERVKFFSE-KIADNDFPSD--GLVLVYDD 276

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +  + LG  ++ PR   + K+A++   T LL+I+    RTG++ PVA  EPV + G  +
Sbjct: 277 IAYGQSLGTTSKFPRDSFAFKWADEIRETTLLEIEWSPSRTGLINPVAIFEPVELEGTTV 336

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A++HN   ++ L           ++ +GD + V +A  +IP++ + +      D    
Sbjct: 337 SRASVHNISIMEEL-----------ELGIGDTIAVYKANMIIPQIAENLTRSGVKD---- 381

Query: 429 SFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             P  CP+C  +  +R ++        A  CT    C A+ L+    FVSRDA NI+GL 
Sbjct: 382 -IPEECPVCHGKTEIRKVSD-----AKALYCTNE-ECGAKHLKSFALFVSRDALNIDGLS 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +  L+ F       F I   +DIF L++ +      I+++ GFG+ S  NL  SI K R 
Sbjct: 435 EATLEKFIAK---GF-INHYSDIFHLEQYKDA----IKSMEGFGEKSYVNLQKSIEKARV 486

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L + I+SLGI ++G   A+ + K      NF  E    + H  ++ LS   +  +G +
Sbjct: 487 TTLPKLIYSLGIANIGLANAKVICKEL----NFDIE---KMLHVTEEELS--EISGIGPV 537

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QRHK 665
           IA+A V ++   +++     LL E+   I + E++  ++I EN   V TG+++    R++
Sbjct: 538 IAKAFVSYFAKEQHVEEFRRLLTEL--EIPKEEESKEAQIFENMNFVITGSVEHFANRNE 595

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  +   G  V+  ++ KT+ +I  D  +  SK +KA++LGV I++EE FL +L+
Sbjct: 596 VKAVIESKGGKVTGSVTSKTNYLINNDIESTSSKNKKARELGVPIISEETFLKMLE 651


>gi|239624075|ref|ZP_04667106.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522106|gb|EEQ61972.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 650

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 210/720 (29%), Positives = 348/720 (48%), Gaps = 89/720 (12%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I++ ++ +S+L Q        YYQ S+ I+ + EYD L          + +L   E   G
Sbjct: 5   IQRMKELVSTLRQ----AGKAYYQESREIMSNFEYDRL----------YDELCSLEKETG 50

Query: 74  ------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
                 P  ++G E+   L K TH  P LSL+K  ++EDL+ ++          D   + 
Sbjct: 51  IIMSGSPTQRVGYEVLSELPKETHESPMLSLDKTKSVEDLQSWL---------GDQKGL- 100

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             L  K+DG  I + YE G+   A  RG+G  GE ++   R    +P  L+++    + +
Sbjct: 101 --LSWKMDGLTIVLTYEGGRLTKAVTRGNGEIGEVITPNARVFANVP--LNISYEGQLIL 156

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245
           RGE  I+ +DF  +N+E+  V  K Y NPRN  SG +R+LN + IT  R ++F    L +
Sbjct: 157 RGEAVITYSDFKRINEEIEDVDAK-YKNPRNLCSGSVRQLN-SQITAERNVHFEAFALVR 214

Query: 246 TSEI-FAKGQYEMLQKMRCLGFPVNN--GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
              + F   +    + +R  GF V +   V   N    +  +   ++   + +P   DGL
Sbjct: 215 ADGVDFGNSRKRQFEWLREQGFEVVHYEEVTAENLPEAVNGFAEAVEG--NDVPS--DGL 270

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V   D+ +  + LG  A+ PR  I+ K+ ++   TRL  I+    RTG++ PVA  +PV 
Sbjct: 271 VLTFDDIAYGEALGRTAKFPRNSIAFKWQDEIRETRLDYIEWSASRTGLINPVAVFDPVE 330

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A++HN   ++ L           D+  GD + V +A  +IP++ D +     
Sbjct: 331 LEGTTVSRASVHNLSIMEAL-----------DLGQGDTITVYKANMIIPQIADNLTRSGV 379

Query: 423 PDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            D      P  CP+C     ++ +N      V +  CT    C A++++    FVSRDA 
Sbjct: 380 RD-----IPKECPVCGGETQIKQMND-----VKSLYCTNP-DCQAKKIKSFTLFVSRDAL 428

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+GL +  L+ F      A  I   ADIF L+  +      I  + GFG  S  NL  S
Sbjct: 429 NIDGLSEATLEKFIG----AGFIHEYADIFHLEEHKDA----IVEMEGFGQKSYDNLIAS 480

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I    N +L R ++ LGI  +G   A+ L + + S  +F +     + H   D   L+ V
Sbjct: 481 IKTASNTTLPRMVYGLGIAGIGLANAKMLCREFKS--DFEK-----MRHAQAD--ELVAV 531

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G ++AQA ++++ + +N  AV+ LLKE++    + E  + +  E    V TG+++  
Sbjct: 532 DGIGGVLAQAWMDYFASEKNNLAVDHLLKELTIEAEQVE-TMDAIFEGMTFVITGSVEHF 590

Query: 662 -QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R + QE +   G   +  ++ KT  +I  D  +  SK +KA+ LGV I++EE+FL +L
Sbjct: 591 ANRKELQEVIESRGGKATGSVTAKTTYLINNDVASNSSKNKKAKDLGVPIISEEEFLRML 650


>gi|255067693|ref|ZP_05319548.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256]
 gi|255048034|gb|EET43498.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256]
          Length = 543

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 173/562 (30%), Positives = 263/562 (46%), Gaps = 151/562 (26%)

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
           M+  R +LPY+IDG+V KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIG
Sbjct: 1   MQQKRPSLPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIG 60

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG +TPVARL+PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG
Sbjct: 61  RTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAG 109

Query: 408 EVIPKVVDIIVNERH---------------------------------PDAQPFSFPSFC 434
           +VIP+VV +I   R                                  P  +P+  P+ C
Sbjct: 110 DVIPEVVRVIFERRPMQETAVSNVSDGLKYQQDDLFAETPSTNQTQSVPLHKPYRLPTHC 169

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC+S + R+     G+ VA  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++  
Sbjct: 170 PICRSEIERE----EGEAVA--RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQL 223

Query: 495 FKSEDPA--FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT---------------- 536
             ++D    F+     DI TLQ+ ++T+  K+ +    GD                    
Sbjct: 224 V-AQDLVRHFADLYRLDIPTLQKMKETAD-KVSSENENGDAETVSDDLSELNTQNGKKQP 281

Query: 537 -----NLYDSINKRRNISLERFIFSLGIRHV----------------------------- 562
                N+   I   +   L RF+F+LGIRHV                             
Sbjct: 282 TKWAENILAGIEASKTPELTRFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILACL 341

Query: 563 ---GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP----------------- 602
              G  +ARS+A ++      A  I+ ++A         + +P                 
Sbjct: 342 PDIGTVVARSIAHFFAQDAQQAM-IDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGF 400

Query: 603 LVGDIIAQAIVEF-----------------YQNPRNICAVEALLKEV-----SPSIGRHE 640
            + +  AQA+ E                  +Q  R+     ALL+ +       S    E
Sbjct: 401 KISENKAQALWELAGKSIEGLQTDKALPADWQTWRSETQNAALLENLKTFFAQTSSENQE 460

Query: 641 KNVSSE----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
             VS +    +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GS
Sbjct: 461 ATVSDDLNEAVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGS 520

Query: 697 KLEKAQQLGVKIMNEEQFLFLL 718
           KLEKA  LGV +++EE+ L +L
Sbjct: 521 KLEKANALGVAVLSEEELLTML 542


>gi|302538378|ref|ZP_07290720.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
 gi|302447273|gb|EFL19089.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
          Length = 699

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 190/698 (27%), Positives = 305/698 (43%), Gaps = 68/698 (9%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY      + D+ +D L     A   A+P+     DP  P  K+ G   ++  +V H+ 
Sbjct: 42  AYYGSGGSPLDDASFDLLVSLIQAYEAAYPE---HVDPASPTGKVAGGA-VAGGEVAHTA 97

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             LSL   +  +DL  +   + R           + +EPK+DG  +  RY  G+ V    
Sbjct: 98  AMLSLANAFGPQDLLDWEASLVRRLGGPVTGG--YAVEPKLDGASLAARYRAGRLVQLVT 155

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG SGEDVS  I  I  +P  L L +    EVRGEV ++   F   N      G  P+
Sbjct: 156 RGDGTSGEDVSHAIGTIVGLP--LELAVEATFEVRGEVLLTAEQFERANRTRAEHGAGPF 213

Query: 214 ANPRNAASGILR---RLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF---- 266
           +N RN A+G LR   R    +++ +    V   G T+ +      E++  +   G     
Sbjct: 214 SNARNGAAGTLRAKGRAYTVEMSFWAFAAVELEGGTA-LPGTTHSEVMAYVAAAGVRTAA 272

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
               G+  A T  G     + +  +R+ LP+ IDG+V K+D  + Q   G  +R P W  
Sbjct: 273 DTAAGLTVAATAAGAQEQVDRIAGMRAGLPFGIDGVVVKLDSLAEQAAAGTGSRHPHWAT 332

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K A  +  TRLLD+   +GRTG+L P A LEPV + G+++ +ATLHN   I       
Sbjct: 333 AYKLAAVERRTRLLDVTWAVGRTGVLAPTAVLEPVEVDGSVVRHATLHNPADIA------ 386

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 R + +GD V V +AG+VIP+V   +V  R    +P   P  CP CQ  + R   
Sbjct: 387 -----RRGLLIGDTVTVYKAGDVIPRVEAPVVELRTGAERPVVVPEVCPGCQGEIDRSQE 441

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                     RC     C   ++  + +   RD  +I+GLG++ +    + E     +R 
Sbjct: 442 R--------WRCAQPADCG--RIAAILYAAGRDQLDIDGLGERYVRALVEEE----GVRD 487

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            AD+FTL           E            L + I   + + L R   +LG+   G  +
Sbjct: 488 VADLFTLDPAALARAAGSEK-------RAVKLAERIEAAKALPLSRVFCALGVVGTGRGM 540

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--NPRNICA 624
           +R +A+++ + +                  ++  V LVG+  A AIV       P     
Sbjct: 541 SRRIARHFGTMEAVRAADAA----------AMTAVELVGETKAAAIVAQVAELGPVIDKL 590

Query: 625 VEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKI-----QRHKAQEYVTQLGAV 676
             A ++ V P +       +  +  +  + +V TG +         R + +E + + G  
Sbjct: 591 AAAGVRPVEPQVPAAAPAGEAEAGPLAGQNVVVTGKMTGALAAYDTRDRVRELIERAGGR 650

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            S  +S KT +++ G+  GSK+ KA+  G++I+ EE F
Sbjct: 651 SSGSISGKTTLLVAGEKAGSKVAKAEAAGIEILGEEAF 688


>gi|154499783|ref|ZP_02037821.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC
           29799]
 gi|150271381|gb|EDM98638.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC
           29799]
          Length = 673

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 197/701 (28%), Positives = 318/701 (45%), Gaps = 76/701 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY  + P + D+ YD L      +  A       +  N P N +G      L K  HSIP
Sbjct: 23  YYNLNSPSVSDAVYDRLFEELQELESA----TGVQMSNSPTNTVGYPAVSKLEKTNHSIP 78

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+K+ N E+L +F+           ++ + F L  K+DG  I + YE GK V AA R
Sbjct: 79  LLSLDKVKNTEELCRFM----------GEHQVMFML--KLDGLTIKLTYEGGKLVEAATR 126

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE V+   RAI  IP   ++   + + V GE +I  +DF  L   ++    KPY 
Sbjct: 127 GDGDVGEIVTHNTRAIGGIPE--NIQYEDRLVVTGEAFIRPSDFEQLKTTLVDSDGKPYK 184

Query: 215 NPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGV 272
           N RN A+G +R  +    + R L F    + +  E   + + E L+ +R LGF P    V
Sbjct: 185 NGRNLAAGSVRLFDAGACLGRRLMFMPFNVLEGMEELPR-KSERLKALRPLGFLPCKYMV 243

Query: 273 R-----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
                 Q  T  GI     ++K   +     IDG+V   ++ +L K  G      +  ++
Sbjct: 244 TKRPLTQKETEDGI----RQLKEYAADADIPIDGIVITYNDIALSKSCGRTGHHYKDGLA 299

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
            KF +    T+L  I+   GRTG + PVA  EPV I G  ++ A+LHN  +I+ L     
Sbjct: 300 FKFEDDLFQTKLQTIEWTPGRTGEIAPVAIFEPVEIDGCEVSRASLHNLSFIEDL----- 354

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF----PSFCPICQSRVVR 443
                 ++  G R+LV +   +IP V      E + D   FS     P  CP C      
Sbjct: 355 ------ELAPGCRILVSKRNMIIPHV------EENLDRGNFSMDAVIPHQCPCCGEPTRI 402

Query: 444 DLNPKTG-----KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
                 G     +++    C    AC  ++L++  HFVS+ A NIEGL +  L+      
Sbjct: 403 HETSGRGENGEERVIKTLFCDNA-ACETRRLKQFVHFVSKKAMNIEGLSEGTLEKLIGRG 461

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I    DI+ L + +     +I  + GFG+ S   L+D+I + R+ + ER++ ++ 
Sbjct: 462 ----WIHSYLDIYRLDQHRN----EIIRMDGFGEKSWQRLWDAIQQSRSTTFERYVIAMD 513

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  VG   ++ L +    +     E  + +    D      ++P  G+ +   I E++  
Sbjct: 514 IPMVGNTASKVLCR---EFHGSLDEFRDAVYGGYD----FRQLPDFGETLHNNIQEWFNK 566

Query: 619 PRNICAVEAL--LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLG 674
             N C  E L  +  +   +    + ++ +     K +V TG ++   R +    +  LG
Sbjct: 567 EENFCIWEELQMMMNIQKPVETDNQTINRDNSFSGKTIVVTGKVEPYTRDEMNSLIASLG 626

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           AV  + ++RKTD ++ G+  GSKL KA++L + ++  E+F 
Sbjct: 627 AVAGSSVTRKTDYLVCGEKAGSKLSKARELDIPVLTPEEFF 667


>gi|154484656|ref|ZP_02027104.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC
           27560]
 gi|149734504|gb|EDM50421.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC
           27560]
          Length = 655

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 202/689 (29%), Positives = 322/689 (46%), Gaps = 69/689 (10%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YYQ +  I+ + EYD L      +      +      N P   +G ++   L K  H+ 
Sbjct: 20  AYYQEANEIMTNFEYDKLYDELVGLEKETGMVL----SNSPTVNVGYQVVSQLPKEQHNS 75

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL+K   +  L  F            D     +   K+DG  + + YE G+ V A  
Sbjct: 76  PMLSLDKTKEVGALADF----------AGDRKCLLSW--KMDGLTVVLTYENGELVKAVT 123

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RG+G  GE ++   +    IP  +S+     + +RGE  I  +DF  +N E+     K Y
Sbjct: 124 RGNGLVGEVITNNAKTFKNIP--ISIPYKGRLTLRGEAIIKYSDFEQINREIEDADSK-Y 180

Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPV-NN 270
            NPRN  SG +R+LN      R +NF    L    ++ F     +  + M   GF V   
Sbjct: 181 KNPRNLCSGSVRQLNSQVTAERNVNFVAFALINADDVDFDNSIEQQYKWMESQGFQVVEY 240

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
            V   N+    V Y+        T  Y  DGLV   D+      LG  A+ PR  I+ K+
Sbjct: 241 RVVTRNSMEDAVKYF---AGKIQTYDYPSDGLVLMFDDIEYGLSLGTTAKFPRNGIAFKW 297

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
            ++QA T L  I+    RTG++ PVA  EPV + G  ++ A++HN   ++ L        
Sbjct: 298 EDEQAETTLKYIEWSPSRTGLINPVAVFEPVELEGTTVSRASVHNISIMEEL-------- 349

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
              ++  GDR+ V +A  +IP++ + +      D      P  CP+C      ++  + G
Sbjct: 350 ---ELGSGDRIKVYKANMIIPQISENLTKSGIDD-----LPKECPVCGH--ATEVKAENG 399

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
             +    C     C A+ ++    FVSR+  NI+GL ++ L+ F      A  I+  ADI
Sbjct: 400 --IKTLYCPNS-QCPAKHVKLFTLFVSRNGMNIDGLSEETLEKFID----AGYIKEFADI 452

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           F L R  +    +I    GFG  S  NL DS+ K RN+ L   I+SLGI ++G+  A+ +
Sbjct: 453 FHLDRYYE----EIVATPGFGQKSYDNLMDSVEKARNVELSALIYSLGIPNIGSANAKLI 508

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
            K +          NNI    N     LI +  +G+I+A+   +++ +  NI  ++ LLK
Sbjct: 509 CKAF---------NNNIEKIRNASVEELIEIDGIGEIMAEKFCQYFADEDNIKKLDNLLK 559

Query: 631 EVSPSIGRHEKNVSSE-IENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDII 688
           EV  +I   E+N + + ++    V TG+++    R++ + Y+ + G  V+  +S KT+ +
Sbjct: 560 EV--NIAEPEENTTPQNMDGLTFVITGSVEHFANRNELKSYIEKHGGKVTGSVSAKTNYL 617

Query: 689 IVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
           I  D  +  SK +KA+QLGV+I+ EE FL
Sbjct: 618 INNDAMSASSKNKKAKQLGVEIVTEEVFL 646


>gi|160895209|ref|ZP_02075981.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50]
 gi|156863088|gb|EDO56519.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50]
          Length = 653

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 196/713 (27%), Positives = 330/713 (46%), Gaps = 78/713 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG-- 73
           + R  +  L ++++     YYQ    I+ + EYDAL          + +L   E   G  
Sbjct: 2   EKRDRIKELVEKLNEASKKYYQEDTEIMSNLEYDAL----------YDELVELEKETGIV 51

Query: 74  ----PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
               P   +G E+   L K  H  P LSL+K  ++E L          W       I + 
Sbjct: 52  MSNSPTVHVGYEIVSELPKEVHEHPMLSLDKTKSVEALAA--------WLGTHQGVISW- 102

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
              K+DG  + + YE G  V A  RG+G  GE ++   R    IP+ +       + +RG
Sbjct: 103 ---KLDGLTVVLTYENGTLVKAVTRGNGLEGEVITNNARVFANIPKEIPYKGK--LTIRG 157

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247
           E  I  +DF  +N E IA     Y NPRN  SG +R+LN   IT  R ++FF   L    
Sbjct: 158 EAVIKYSDFEKIN-EQIADADAKYKNPRNLCSGSVRQLN-NRITKERNVHFFAFNLVDGE 215

Query: 248 EIFAKGQYEM-LQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           ++  K  +   L  +   GF V  + +  A+     V+ + E    ++  P D  GLV  
Sbjct: 216 DVDFKNSFSYELDWLEQQGFDVVEHYLIDADKLPERVAQFAEQIE-KNDFPSD--GLVLV 272

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +++ +  K LG  A+ PR  ++ K+A++QA T L  ++    RTG++ PVA  +PV++ G
Sbjct: 273 LEDLAYGKSLGRTAKFPRDSMAFKWADEQAVTHLQYVEWSPSRTGLINPVAVFDPVSLEG 332

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  A++HN   ++ L            + +GD + V +A  +IP++      E H  +
Sbjct: 333 TTVGRASIHNVSILRSL-----------QLGIGDEISVYKANMIIPQIA-----ENHTRS 376

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P  CP C          +    V    CT    C A++L+   HFVSR+A NI+G
Sbjct: 377 GNVPIPESCPACGGLTKIVTEGEGVDQVETLYCTNEF-CPAKKLKSFAHFVSRNAMNIDG 435

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           L +  +D F +       +    D++ + R ++    +I  + GFG+ S   L  +++  
Sbjct: 436 LSEATIDKFIEQG----YLDHLDDLYHMNRHEE----EIVELEGFGEKSYAKLIQAVDTS 487

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R+ ++ RF++ LGI  VG   A+ + K++          NN+    + D  +   +  +G
Sbjct: 488 RHTTMNRFVYGLGIPGVGDATAKLICKHFK---------NNLDQIMHADVEAYTEIDGIG 538

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRH 664
            +IA+ IV +++NP N   ++ LL E+        + V   +     V TG+L++   R 
Sbjct: 539 TVIAEEIVRYFKNPSNCAIIDKLLHEL--EFEAETETVPQTLAGITFVITGSLEQFANRD 596

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
           + ++Y+   G  V+  +S KT  ++  D  +  SK +KAQ LG+ I++E QFL
Sbjct: 597 EMKQYIEDRGGKVAGSVSSKTGYLVNNDVTSTSSKNKKAQSLGIPIISETQFL 649


>gi|166032192|ref|ZP_02235021.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC
           27755]
 gi|166027915|gb|EDR46672.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC
           27755]
          Length = 690

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 211/736 (28%), Positives = 330/736 (44%), Gaps = 112/736 (15%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           K + +L ++++ +   YY    P++ D+EYD L          F +L   E+       N
Sbjct: 30  KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRL----------FDELKELEEQTGFILSN 79

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G      L KVTH IP LSLEK        K I+ +  F + ++   + F L  
Sbjct: 80  SPTQTVGYYPVSELAKVTHPIPLLSLEKT-------KLISELLDFMKGQE---VLFML-- 127

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGE 190
           K+DG    + YE G+ + A+ RGDG  GED++  I A   +P    L IP  E + + GE
Sbjct: 128 KLDGLTTKLIYEDGRLIQASTRGDGEVGEDITHNIPAFLNVP----LTIPHKERLVITGE 183

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI----TRYLNFFVHGLGKT 246
            +I  NDF  L D +     KPY N RN ASG +R L+P +      R+L F V   G  
Sbjct: 184 SFIPTNDFERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLE-GME 242

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYY-----NEMKSIRSTLPYDIDG 301
              F   +   L+ +  LGF        + T  G+   Y      E+ S  + L   IDG
Sbjct: 243 DVPFPDSRACKLEGLTHLGFGYCPFFSISGT--GLSKEYAEKFIQELVSTAANLHLPIDG 300

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V   D  S  K  G+     +  +++KF +    T L +I+    R G + PV   + V
Sbjct: 301 IVMIFDSLSYSKSCGKTGHHYKDGLAYKFEDDTYETFLREIEWTPTRFGEIAPVGIFDTV 360

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            I G  ++ A+LHN  +IK L+           +  G R+LV +   +IP + D +   R
Sbjct: 361 EIDGCDVSRASLHNLTFIKNLE-----------LVPGCRILVSKRNMIIPHIEDNLDRGR 409

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKT--GKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           + D  P      CP C S+  R  + KT  G+ V    C     C +Q   R  HF S+ 
Sbjct: 410 YTDITP----PVCPCCGSKT-RTYSRKTSDGRTVETLHCDNP-QCDSQITRRFVHFASKK 463

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NIEGL +  L+ F         +    DI+ L+  ++     I  + G+G+ S   L+
Sbjct: 464 AMNIEGLSEATLEKFLN----LGYLHSFQDIYHLEEHRE----DIVALDGYGEKSFDRLW 515

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY-----------LSYQNFAQ--EINN 586
           +SIN  R  S  R++ S+ I  +G   +R L   +           +   +F Q  +   
Sbjct: 516 ESINASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQAAVGDYDFTQLEDFGE 575

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
           I+ HN   W +            +A ++ ++N +N    E           R E+ + ++
Sbjct: 576 ILNHNIHSWFA-----------DEANLDLWKNLQNEFTFEQ----------RKEETIMTK 614

Query: 647 IENK----KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
            ENK     +V TG L+   R    + + +LGA   + +++KTD +I G+  GSKL KAQ
Sbjct: 615 -ENKFTGCTIVATGKLEHFTRDGINDKILELGAKPGSSVTKKTDYLICGEKAGSKLAKAQ 673

Query: 703 QLGVKIMNEEQFLFLL 718
            LG+ I+ E +FL ++
Sbjct: 674 SLGIPILTEAEFLEMI 689


>gi|315652468|ref|ZP_07905453.1| DNA ligase [Eubacterium saburreum DSM 3986]
 gi|315485257|gb|EFU75654.1| DNA ligase [Eubacterium saburreum DSM 3986]
          Length = 649

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 206/712 (28%), Positives = 346/712 (48%), Gaps = 76/712 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           RK +  L + ++     YY  +  I+ + EYD L     ++     ++  S   N P   
Sbjct: 4   RKRIKELVEILNKAAKSYYVDAVEIMPNIEYDKLYDELVSLEKE-TNVVLS---NSPTQN 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G E    L K  H  P LSL+K  ++ +L  ++           DN    +   K+DG 
Sbjct: 60  VGYETASELPKKAHESPMLSLDKTKSVAELEDWLG----------DNKALLSW--KMDGL 107

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + Y  G+ V A  RG+G  GE ++   +    +P  L +     + +RGE  I  +D
Sbjct: 108 TIVLTYRGGELVEAVTRGNGIIGEVITNNAKNFQNVP--LRIEYKGELILRGEAVIKYSD 165

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEI-FAK 252
           F  +ND +     + Y NPRN  SG +R+LNP  +TR    Y N F   + +   I F  
Sbjct: 166 FKRINDSITDADAR-YKNPRNLCSGSVRQLNPA-VTRERKVYFNVF--NVVRADNIDFEN 221

Query: 253 GQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + +  +  +  GF V      ++A+    I  +  E K   + +P D  GLV  +D+ +
Sbjct: 222 SKAKQFEWAKNEGFDVVEYKFTQRASLADDIAKF--ESKIAENDIPSD--GLVLLLDDIA 277

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L ++LG  ++ PR  ++ K+++++ +T+L  I+    RTG++ PVA  EPV + G  ++ 
Sbjct: 278 LGERLGSTSKFPRNAMAFKWSDERQTTKLKYIEWSPSRTGLINPVAVFEPVELEGTTVSR 337

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN    + L      M G     VGD + V +A  +IP+V      E    +     
Sbjct: 338 ASLHNVSIFEEL------MLG-----VGDEISVYKANMIIPQVY-----ENLTKSNTEKI 381

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C     RD   K         CT    C  + +++     SRDA NI+GL +  
Sbjct: 382 PKICPACG----RDTTIKKDNESKVLLCTNP-DCQIKHIKQYALMASRDALNIDGLSEST 436

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+ F       F I+  +D+F L + +     +I N+ GFG  S   L  ++++ +N ++
Sbjct: 437 LEKFLS---KGF-IKSDSDLFRLDKFKD----EIINMEGFGKRSYEKLIAALDEAKNTTV 488

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGI  +G+  A+ +AKY      F  +I+ II+ + DD   L  +  +G+++A 
Sbjct: 489 SRFLYSLGIAGIGSANAKMIAKY------FDNDIDRIISASKDD---LRDIEGIGEVLAG 539

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEY 669
           +I +F+++ +NI  VE+L K +       E     +   K  V TG+L     R++ +E 
Sbjct: 540 SIEDFFKSEKNIENVESLRKIL--KFETEESGGGDKFAGKVFVITGSLTHFSNRNEMKEL 597

Query: 670 VTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + + G  VS  +S KT+ +I  D  +  SK +KA++LGV+I++EE FL LL+
Sbjct: 598 IEKNGGKVSGSVSSKTNFLINNDTGSNSSKNKKAKELGVEIISEEDFLKLLE 649


>gi|153853203|ref|ZP_01994612.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814]
 gi|149753989|gb|EDM63920.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814]
          Length = 692

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 209/732 (28%), Positives = 326/732 (44%), Gaps = 102/732 (13%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           K + +L ++++ +   YY    P++ D+EYD L          F  L + E+       N
Sbjct: 30  KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRL----------FDKLKKLEEQTGFILSN 79

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G      L KVTH  P LSLEK        K I+ +  F + ++   + F L  
Sbjct: 80  SPTQTVGYYPVSELAKVTHPTPLLSLEKT-------KLISELLDFMKGQE---VLFML-- 127

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGE 190
           K+DG    + YE GK + A+ RGDG  GED++  I A   +P    L IP  E + + GE
Sbjct: 128 KLDGLTTKLIYEDGKLIQASTRGDGEVGEDITHNIPAFLNVP----LTIPHKERLVITGE 183

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL--GKTS 247
            +I  NDF  L D +     KPY N RN ASG +R L+P + I R + F    +  G   
Sbjct: 184 SFIPTNDFERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLEGMED 243

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYY-----NEMKSIRSTLPYDIDGL 302
             F   +   L+ +  LGF        + T  G+   Y      E+ S  + L   IDG+
Sbjct: 244 VPFPDSRACKLEGLTHLGFGYCPFFSISGT--GLSREYAEKFIQELVSTAANLHLPIDGI 301

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V   D  S  K  G+     +  +++KF      T L +I+    R G + PV   + V 
Sbjct: 302 VMIFDSLSYSKSCGKTGHHYKDGLAYKFENDTYETVLREIEWTPTRFGEIAPVGIFDTVE 361

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I G  ++ A+LHN  +IK L+           +  G R+LV +   +IP + D +   R+
Sbjct: 362 IDGCDVSRASLHNLTFIKNLE-----------LVPGCRILVSKRNMIIPHIEDNLDRGRY 410

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKT--GKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
            D  P      CP C S+  R  + KT  G+ V    C     C +Q   R  HF S+ A
Sbjct: 411 TDITP----PVCPCCGSKT-RTYSRKTSDGRTVETLHCNNP-QCDSQITRRFVHFASKKA 464

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NIEGL +  L+ F         +    DI+ L+  ++    +I  + G+G+ S   L++
Sbjct: 465 MNIEGLSEATLEKFLN----LGYLHSFQDIYHLEEHRE----EIVALDGYGEKSFDRLWE 516

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYY-----------LSYQNFAQ--EINNI 587
           SIN  R  S  R++ S+ I  +G   +R L   +           +   +F Q  +   I
Sbjct: 517 SINASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQAAVGDYDFTQLEDFGKI 576

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           + HN   W +            +A ++ ++N +N    E   +E  P + +  K     I
Sbjct: 577 LNHNIHSWFA-----------DEANLDLWKNLQNEFTFEQRKEE--PIMTKENKFTGCTI 623

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
                V TG L+   R    + + +LGA   + +++KTD +I G+  GSKL KAQ LG+ 
Sbjct: 624 -----VATGKLEHFTRDGINDKILELGAKPGSSVTKKTDYLICGEKAGSKLAKAQSLGIP 678

Query: 708 IMNEEQFLFLLQ 719
           I+ E +FL ++ 
Sbjct: 679 ILTEAEFLEMIH 690


>gi|160935782|ref|ZP_02083157.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441526|gb|EDP19236.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC
           BAA-613]
          Length = 651

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 212/730 (29%), Positives = 344/730 (47%), Gaps = 111/730 (15%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG-- 73
           Q  KEL S+ +E       YYQ S+ I+ + EYD L          + +L   E   G  
Sbjct: 6   QRMKELVSILREAG---KAYYQESREIMSNFEYDKL----------YDELVSLEKETGVT 52

Query: 74  ----PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
               P  ++G E+   L K TH  P LSL+K  ++EDL++++          D   +   
Sbjct: 53  LSGSPSQQVGYEILSELPKETHGSPMLSLDKTKSVEDLQEWLG---------DQKGL--- 100

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           L  K+DG  I + YE+G    A  RG+G  GE ++   R    IP  L+++    + +RG
Sbjct: 101 LSWKMDGLTIVLTYEEGTLAKAVTRGNGEIGEVITPNARVFANIP--LNISYQGQLILRG 158

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247
           E  I+ +DF  +N  +  V  K Y NPRN  SG +R+LN + IT  R ++F    L K  
Sbjct: 159 EAVITYSDFERINSGIEDVDAK-YKNPRNLCSGSVRQLN-SQITAERNVHFEAFALVKAD 216

Query: 248 EI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI------- 299
            + F   +    + ++  GF V               +Y E+ +  ++LP  +       
Sbjct: 217 GVDFHNSRKAQFEWLKGQGFEV--------------VHYEEVDA--ASLPASVEGFAKAV 260

Query: 300 -------DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
                  DGLV   D+ +  + LG  A+ PR  I+ K+ ++   T L  I+    RTG++
Sbjct: 261 EGNDIPSDGLVLTYDDIAYGESLGRTAKFPRNSIAFKWKDEIRETALSYIEWSASRTGLI 320

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
            PVA  EPV + G  ++ A++HN   ++GL           ++ VGD + V +A  +IP+
Sbjct: 321 NPVAVFEPVELEGTTVSRASVHNLSIMEGL-----------ELGVGDTITVYKANMIIPQ 369

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           + + +      D      P  CP+C  R  +R +N      V +  CT    C A++++ 
Sbjct: 370 IEENLTRSGVKD-----IPEECPVCGGRTEIRKVND-----VKSLYCTNP-DCQAKKIKS 418

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
              FVSRDA NI+GL +  L+ F +    A  I   ADIF L+  +      I  + G G
Sbjct: 419 FTLFVSRDALNIDGLSEATLEKFIQ----AGFIHEYADIFHLEEHRDA----IVEMEGLG 470

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
             S  NL  SI    N +L R ++ LGI  +G   A+ L +       F  + +  + H 
Sbjct: 471 QKSYDNLIASIKTASNTTLPRMVYGLGIAGIGLANAKMLCR------EFKYDFDK-MRHA 523

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
            ++   L+ V  +G ++AQA ++++   RN   V+ LL E++    + E    +  E   
Sbjct: 524 GEE--ELVAVDGIGGVLAQAWMDYFALGRNNQMVDRLLAELNIEKEQPETAGEAVFEGMN 581

Query: 652 LVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKI 708
            V TG+++    R + QE +   G  V+  ++ KT  +I  D  +  SK +KA++LGV I
Sbjct: 582 FVITGSVEHFANRKELQELIESKGGKVTGSVTAKTAYLINNDAASNSSKNKKAKELGVPI 641

Query: 709 MNEEQFLFLL 718
           ++EE+FL +L
Sbjct: 642 ISEEEFLRML 651


>gi|260587930|ref|ZP_05853843.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|331084525|ref|ZP_08333626.1| DNA ligase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260541457|gb|EEX22026.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|330401233|gb|EGG80824.1| DNA ligase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 650

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 210/712 (29%), Positives = 344/712 (48%), Gaps = 89/712 (12%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73
           KEL  L  E S     YYQ  + I+ + EYD L          + +L + E   G     
Sbjct: 8   KELLKLLTEAS---KAYYQEDREIMSNFEYDKL----------YDELVQLERETGVTLAG 54

Query: 74  -PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G E    L K  H  P LSL+K  +IE LR FI       QK         L  
Sbjct: 55  SPTASVGYEALDELPKEAHESPMLSLDKTKDIEALRAFIGE-----QKS-------LLSW 102

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  I + Y +GK   A  RG+G  GE ++   +    IP  ++    E++ +RGE  
Sbjct: 103 KLDGLTIVLTYHEGKLQKAVTRGNGTVGEVITGNAKVFKNIPLQIAYQ-GELV-LRGEAI 160

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI- 249
           I+ +DF  +N ++  V  K Y NPRN  SG +R+LN  +IT  R +NF+   L K   + 
Sbjct: 161 ITYSDFEKINAQIEDVDAK-YKNPRNLCSGSVRQLN-NEITAKRNVNFYAFSLVKAEGVD 218

Query: 250 FAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           F   + +    ++  GF V    V    T    + Y++   S ++  P D  GLV   D+
Sbjct: 219 FQNSREQQFCWLKEQGFDVVEYRVVTGETLDEAMDYFSNQVS-KNDFPSD--GLVVLYDD 275

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +  + LG  A+ PR   + K+ ++   T L +I+    RTG++ PVA  EP+ + G  +
Sbjct: 276 IAYGESLGSTAKFPRNAYAFKWKDEIRETVLKEIEWSASRTGLINPVAIFEPIELEGTTV 335

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A++HN   +K L            + +GD++ V +A  +IP++ + +    +      
Sbjct: 336 SRASVHNISIMKEL-----------QLGIGDKIQVYKANMIIPQIAENLTRSGN-----L 379

Query: 429 SFPSFCPIC--QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
             P  CP+C  ++RV+     KT ++ A + C     C A++++    FVSRDA NI+GL
Sbjct: 380 EIPKICPVCKKEARVI-----KTNEVEALY-CMNE-ECQAKKIKSFTLFVSRDAMNIDGL 432

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            +  L+ F       F IR   DIF +++ +     +I  + GFG  S  NL  S+ K +
Sbjct: 433 SEATLEKFILK---GF-IRDFGDIFEIEKYKD----EILEMEGFGQKSYENLIASLEKAK 484

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L R ++SLGI ++G      LA   L  +    +I  +IA N ++  S   +  +G 
Sbjct: 485 HTTLPRVLYSLGIANIG------LANAKLICKELQYDIEKMIAANEEEISS---IEGIGP 535

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHK 665
           +IA+A  E++ N  N+     LL  +       E+N+S  +E K+ V TG++     R +
Sbjct: 536 VIAKAYTEYFANEENLKKFRHLLSHLELEEVTREENLS--LEGKQFVITGSVVHFANRAQ 593

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFL 715
            +E + + G  V+  ++ KT  +I  D     SK +KA++LG+ I++E+ F+
Sbjct: 594 LKEEIEKRGGKVTGSVTSKTHYLINNDTTSNSSKNKKAKELGIPILSEDDFM 645


>gi|225569253|ref|ZP_03778278.1| hypothetical protein CLOHYLEM_05335 [Clostridium hylemonae DSM
           15053]
 gi|225162052|gb|EEG74671.1| hypothetical protein CLOHYLEM_05335 [Clostridium hylemonae DSM
           15053]
          Length = 648

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 205/709 (28%), Positives = 336/709 (47%), Gaps = 73/709 (10%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L ++++     YYQ ++ I+ + EYD   R  D +     +L  +     P   +G 
Sbjct: 1   MQELVEQLNKAGKAYYQDAEEIMSNYEYD---RLYDELVSLEKELGITL-SGSPTANVGY 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           E+   L K  H  P LSL+K  ++E+L+KF    ++   W              K+DG  
Sbjct: 57  EVLSELPKERHDSPMLSLDKTKDVEELKKFAGGQKVMMSW--------------KLDGLT 102

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + Y  G    A  RG+G  GE ++   R    IP  ++    E+I +RGE  I   DF
Sbjct: 103 IVLTYRDGTLYKAVTRGNGEVGEVITNNARVFRNIPLQIAYK-GELI-LRGEAVIGYKDF 160

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQY 255
             +N E+  V  + Y NPRN  SG +R+LN  +IT  R + F+   L +   + F   + 
Sbjct: 161 EKINGEIEDVDAR-YKNPRNLCSGSVRQLN-NEITAKRNVRFYAFTLVQADGVDFHNSRV 218

Query: 256 EMLQKMRCLGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             ++ +R  GF V        +T    V  ++E K   +  P D  GLV   D+    + 
Sbjct: 219 CQMEWLREQGFEVVEFCEVTKDTLEAEVIKFSE-KIAENDFPSD--GLVLVYDDVEYGRS 275

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++ PR   + K+A++   T+LL+I+    RTG++ PVA  EPV + G  ++ A++H
Sbjct: 276 LGRTSKFPRDSFAFKWADETKETKLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVH 335

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   ++ L           ++ VGD + V +A  +IP++ + +      D      P  C
Sbjct: 336 NLSIMEEL-----------ELGVGDEIEVYKANMIIPQIAENLTRSGVKD-----IPLHC 379

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C      D   K      A  C     C A+ L+    FVSRDA NIEGL +  L+ F
Sbjct: 380 PVCGG----DTEVKQVSNAKALYCINP-DCQAKHLKSFALFVSRDALNIEGLSEATLEKF 434

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    I+  ADIF L+R Q     +IE + GFG+ S  NL +SI K R  +L + I
Sbjct: 435 IAKG----YIKEYADIFHLERFQD----EIEKMEGFGEKSYRNLIESIEKARTTTLPKVI 486

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGI ++G      LA   +    F  + + ++A   ++   L  +  VG +IA A V+
Sbjct: 487 YGLGIANIG------LANAKMICSEFGCDTDKMLAAGPEE---LSAIQGVGGVIAGAFVD 537

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQL 673
           ++ + R++     LLKE++      E+           V TG+++    R + +E +  L
Sbjct: 538 YFSDERHVRIFRDLLKELTIPAEETEQK-EQRFAGVNFVITGSVEHFANRGEIKELIENL 596

Query: 674 GAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  V+  ++ KT+ +I  D  +  SK +KA +LG+ I++E+ FL +L +
Sbjct: 597 GGKVTGSVTSKTNYLINNDVTSTSSKNKKANELGIPIISEKDFLEMLGE 645


>gi|167041226|gb|ABZ05983.1| putative NAD-dependent DNA ligase adenylation domain protein
           [uncultured marine microorganism HF4000_001N02]
          Length = 727

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 217/758 (28%), Positives = 353/758 (46%), Gaps = 141/758 (18%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKIG 79
           +  L Q +++H D YY  + P+I D+EYD L          F +L R  DP  P L+++G
Sbjct: 15  IEELAQLLAHHSDLYYNEAAPVITDAEYDLL----------FDELKRL-DPTHPQLDRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      KV H  P  SL+K   + ++  F+ +     ++       F  +PK+DG+ +
Sbjct: 64  SDPAPGSVKVEHLFPMQSLDKASEVAEISHFVAQTTAHGRR-------FVCQPKLDGSAL 116

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y +G+ V AA RG+G  GEDV+A  R IP IP   SL       +RGEV +    F 
Sbjct: 117 SLEYRRGRLVRAATRGNGERGEDVTANARRIPNIPE--SLGWDGDCHIRGEVVMPLETF- 173

Query: 200 ALNDEMIAVGRKPYA----NPRNAASGILR----RLNPTDITRYLNFFVHGL------GK 245
                     R  YA    NPRN A+G LR    +    D    L+F  +G+       K
Sbjct: 174 ----------RSKYASFAPNPRNLAAGSLRQKHVKAGKGDAAD-LSFHAYGVMFPGLDHK 222

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNG-------VRQANTFHGI-------------VSYY 285
             +  A   +      + + +   NG       V +A    GI             +   
Sbjct: 223 HPDSPAPPDFN--HDSQAIDWLTQNGIAAAGNEVVEAGVDEGIEEAEADEAVAEALLQVT 280

Query: 286 NEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345
                 R T  +++DG+V K+DEF  ++ LG+ A  PRW ++ KF  ++A+T LL +D Q
Sbjct: 281 ENWARKRDTADWELDGVVIKLDEFRKRELLGKTAHHPRWALAWKFPPEEATTVLLGVDWQ 340

Query: 346 IGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405
            GRTG +TPVAR+ PV + G  + N TLHN         +G++ R G  I VGDRV + R
Sbjct: 341 TGRTGTVTPVARVAPVRVSGVTVENTTLHN---------AGEIERLG--ISVGDRVRITR 389

Query: 406 AGEVIPKVVDIIV--------NERHPDAQPFS----------FPSFCPICQSRVVRDLNP 447
            G+VIPK+V+++         N  H D  PF+           P+ CP C+S +  D   
Sbjct: 390 RGDVIPKIVEVLGEATSADLDNRFHADGTPFADPLPLRRGVKIPANCPRCRSGLQED--- 446

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
             G  +   RC   L C + +LER   +  R A  ++G+G++  +   +    A  ++  
Sbjct: 447 --GAFI---RCF-NLECPS-RLERSILYWCR-ALEMDGIGEKLAEQLCE----AGLVKTL 494

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
            D++ L      S   +E +    + S  N+   ++  + + L  F+ +LG+  +G E+A
Sbjct: 495 PDLYRL------SGKDLEGLERMAEKSAANVIAQLDDSKTLDLAAFLAALGLPGIGPELA 548

Query: 568 RSLAKYYLSYQNFAQEINN------IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
                       FAQEI +      ++A +      LIR+  VG+ +A + +   +  R 
Sbjct: 549 ----------GGFAQEIGSSTAMFELLADSEAAVERLIRIEGVGETVAGSFLSGLEMRRE 598

Query: 622 ICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           +  VE L+  ++   +   EK  S  +  +    TGTL + ++  A       G VVSA+
Sbjct: 599 M--VEDLVDVLTITDVEAVEK--SGSLTGQTFCITGTLTRPRKEVALMIKAAGGKVVSAV 654

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            S K D ++ G++ G KL+KA +L V +++E + L ++
Sbjct: 655 -SGKLDHLVAGESAGLKLDKANRLSVNVLSEAEVLSMI 691


>gi|325661475|ref|ZP_08150101.1| DNA ligase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472424|gb|EGC75636.1| DNA ligase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 660

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 204/719 (28%), Positives = 337/719 (46%), Gaps = 86/719 (11%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------P 74
           +  L ++++ + + YY  S+ II D EYD L          + +L + E+  G      P
Sbjct: 7   IKELTKKLNEYRNAYYNESESIISDYEYDKL----------YDELEKLENETGLSFANSP 56

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +G E+   L KV H+ P LSL+K  +++DLRKF +          D     +L  K+
Sbjct: 57  TKTVGFEVKSELEKVKHTHPMLSLDKTKSVDDLRKFAS----------DKDCILSL--KM 104

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG    + YE G  V A  RG+G  GE ++        IP  L++      E+ GE  I+
Sbjct: 105 DGLTCLLTYENGVLVQAETRGNGDVGEVITHNANVFENIP--LTIEYKGHFEIEGEAIIA 162

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRL-NPTDITRYLNFFVHGLGKT--SEIFA 251
            +DF  +N+ +     K Y NPRN  SG +R+L N     R++ F    +       I +
Sbjct: 163 YDDFKKINESLPE--DKKYKNPRNLVSGSVRQLDNKIAAQRHIKFIAWKVPTEVPEGICS 220

Query: 252 KGQYEMLQKMRCLGFPV-----NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                 L   + LGF +      +G         ++     +K+      Y IDGLV   
Sbjct: 221 NSFLHRLMYTKDLGFEIVPLFTYSGKSDKENLPDMIE---SLKTKAHDYGYPIDGLVMTY 277

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++    + LG     PR  I++KF +++  T L +I+  +G++G LTP A  EPV I G 
Sbjct: 278 NDIQYGESLGLTGHHPRHSIAYKFYDEEFETTLKNIEWTMGKSGSLTPTAVFEPVEIDGT 337

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++  A+LHN    K L+ S            GD + V +A ++IP+V D +    +    
Sbjct: 338 MVERASLHNMSIFKDLELSH-----------GDTITVFKANQIIPQVSDNLDRTLNNLCI 386

Query: 427 PFSFPSFCPIC--QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           P   PS CPIC  ++ +++D N     + +   C G L      L +L  FVSR+  NI+
Sbjct: 387 P---PSTCPICGGKTEIIKD-NDTEVLMCSNSNCKGKL------LGKLSAFVSRNKMNID 436

Query: 485 GLGKQQLD-FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           GL ++ L  F  +     FS     DI+ L+         + N+ GFG  S+  L DSI 
Sbjct: 437 GLSEETLSKFIARGWLTCFS-----DIYKLKDYY----IHMINMSGFGRKSIDKLLDSIE 487

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K R++ L RFI +L I  VG   A+ ++K+     +F   +  +I   N  W S+I    
Sbjct: 488 KSRSVELNRFIAALSIPGVGDSTAKDISKH--CEYDFDTFVMRLIDKYN--W-SIIDG-- 540

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ- 662
           +G+  +Q I E+  +  N      LL+ + P       +  + +  K  V TG + + + 
Sbjct: 541 IGEKTSQQINEWIDDSSNREDFRKLLQTIIPVKPNEGNSTDNTLSGKNFVITGDVTQFKN 600

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R + Q+++   G  V+  ++ KT+ +I  D  +  SK +KA++LG+ I++E++FL ++ 
Sbjct: 601 RKELQKFIESKGGKVTGSVTSKTNWLINNDVESTSSKNKKARELGIPIISEKEFLEMVN 659


>gi|154502207|ref|ZP_02039267.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149]
 gi|153797086|gb|EDN79506.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149]
          Length = 663

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 196/718 (27%), Positives = 328/718 (45%), Gaps = 92/718 (12%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73
           K +  L ++++ + D YY  ++  + D+EYD L          F +L+  E+  G     
Sbjct: 18  KRIKELVEQLNEYRDAYYNEARSDVSDAEYDRL----------FDELSELENETGVVYTN 67

Query: 74  -PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G E+   L KV HS P LSL+K  +++DL KF           D + I   L  
Sbjct: 68  SPTQSVGYEVKSELEKVKHSHPMLSLDKTKSVDDLVKF---------AGDKDCI---LSL 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG    + YE G+ V A  RGDG  GE ++   +    IP  LS++     E+ GE  
Sbjct: 116 KMDGLTCLLTYENGELVQAETRGDGEIGELITHNAKVFENIP--LSIDYKGHFEIEGEAI 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           I+  DF  +N  +     K Y NPRN ASG +R+L+      R++ F    +   ++I +
Sbjct: 174 ITYEDFDKINKSL--PDDKKYKNPRNLASGSVRQLDSKIAAQRHIKFIAWKV--PTDIAS 229

Query: 252 KGQYEMLQKMRCLGF------PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 LQ    +GF      P+         F  IV      ++   + P  IDGLV  
Sbjct: 230 SSFINRLQYALDIGFDTVPFLPIRGNCNAE--FINIVVEQLRKRAKEKSFP--IDGLVAT 285

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
            ++ +  + LG     P+  I+ KFAE    T L +I+  IG+TG LTPVA  + V++ G
Sbjct: 286 YNDITYGESLGMTGHHPKHSIAFKFAEDSEETVLREIEWSIGKTGTLTPVAIFDSVDLAG 345

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A+LHN   +K L           +I +G  V V +  E+IP+++    N    D 
Sbjct: 346 TSVSRASLHNISIMKEL-----------NISIGSTVTVVKKNEIIPQIISCDANAMDAD- 393

Query: 426 QPFSFPSFCPIC--QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
                P+ CP+C  ++R+V++ + +    V  H       C  + L R+ HFVS+   +I
Sbjct: 394 ----IPTTCPVCGGETRIVKENDSEVLMCVNPH-------CKGKLLGRVSHFVSKKGMDI 442

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GL ++ +    +       I    DI+ L +       ++  + GFG  SV  L  SI 
Sbjct: 443 SGLSEETIKKLIE----LGWITEITDIYNLDQYYD----RLSTMSGFGKKSVDKLRTSIE 494

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             + + L++FI SL +  +G   ++ L K + ++  F           +  +    ++  
Sbjct: 495 NSKTVRLDKFIASLSVPGIGTSQSKELVKAFGTWDKFRDA--------SVGYYDFTQLDG 546

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ- 662
            GD++   I  ++++  NI    A L            N    +  K  V TG + K + 
Sbjct: 547 FGDVLNNNIHSWFEDMSNIADYLASLMTFESEDNSKTNN---SLNGKSFVVTGKVYKFKN 603

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R + +E + + G  V+  +++ T  +I  D  +  SK +KA++LGV+I+NEEQ + +L
Sbjct: 604 RDEVKEAIEKFGGKVTGSVTKSTFALINNDIESNSSKNKKAKELGVQIINEEQLIEML 661


>gi|291522304|emb|CBK80597.1| DNA ligase, NAD-dependent [Coprococcus catus GD/7]
          Length = 653

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 199/705 (28%), Positives = 337/705 (47%), Gaps = 91/705 (12%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87
            YY     ++ + EYDAL          + +L + E   G      P   +G E+   L 
Sbjct: 21  AYYMQDTELMSNYEYDAL----------YDELVQLEKETGITLSNSPTIHVGYEVLSELP 70

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H  P LSL+K  +++ L  ++          D   +   L  K+DG  I + Y+ G+
Sbjct: 71  KEEHEYPMLSLDKTKDVQVLADWL---------GDQTGV---LSWKMDGLTIVLTYDNGE 118

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G+ GE ++   R    +P  ++      + +RGE  I  +DF ALN + I 
Sbjct: 119 LVKAVTRGNGYVGEVITNNARVFKNVPHRITFKGK--LTLRGEAVIKYSDFNALNSQ-IE 175

Query: 208 VGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLG 265
                Y NPRN  SG +R+LN      R + FF   L     + F   + +  + +   G
Sbjct: 176 DSEAKYKNPRNLCSGSVRQLNNAVTAERNVYFFAFTLVVAEGMDFYNSRMQQFEWLSSQG 235

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F V   V        + +Y  +     +   +  DGLV  +++ +  + LG  A+ PR  
Sbjct: 236 FDVVEHVLVDR--ENLPTYVAQFADRIADNDFPSDGLVLILEDIAYGESLGTTAKFPRNA 293

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I+ K+A++   TRLLD++    RTG++ P+A  EPV + G  ++ A+LHN   ++ L   
Sbjct: 294 IAFKWADEIRETRLLDVEWSASRTGLINPIAVFEPVELEGTTVSRASLHNISILRALQL- 352

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC----QSRV 441
           GK          GD + V +A  +IP++ +   N    DA     P  CP+C    + R 
Sbjct: 353 GK----------GDVIQVYKANMIIPQIAE---NLTRSDA--LEIPKKCPVCGKPTEVRC 397

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           V D        V++  C     C A+ ++R   FVSRDAFNIEG+ +  L+ F +S    
Sbjct: 398 VND--------VSSLYCVNE-ECPAKHVKRFLLFVSRDAFNIEGMSEATLEKFIQS---G 445

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
           F +R PAD+F L          I  + GFG+ S   L  SI K R ++L + I+SLGI +
Sbjct: 446 F-LREPADMFHLDSYHDV----IVEMDGFGEKSYQRLMASIQKARKVTLAKLIYSLGILN 500

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   AR L ++Y        ++  ++A + ++   L  +  +G +IA +  +++ + ++
Sbjct: 501 IGLSNARLLCQHY------RNDLQAMLAASTEE---LTAIDGIGPVIAGSFTDYFADEQH 551

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVV 677
              ++ LL EV       ++N S E    + K  V TG+L+  + R+  +  + + GA V
Sbjct: 552 RIELKDLLGEVEI----EQENFSEEGRVFDGKVFVITGSLEHFKNRNNLKALLEEKGAKV 607

Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +S KT  +I  D  +  SK ++A++LGV ++ EE+ + ++++
Sbjct: 608 AGSVSSKTSYLINNDSTSASSKNKRARELGVPVITEEELIDMMKK 652


>gi|227874422|ref|ZP_03992603.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268]
 gi|227839738|gb|EEJ50187.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268]
          Length = 692

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 204/719 (28%), Positives = 341/719 (47%), Gaps = 91/719 (12%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73
           KEL S   E +     YYQ  + I+ + EYD           A+  L   E  +G     
Sbjct: 46  KELISFLNEAA---KAYYQEGREIVSNLEYD----------KAYDTLLSLEKESGVVLSG 92

Query: 74  -PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G  +  +L K  H  P LSL+K  ++EDL+ F+       Q ++       L  
Sbjct: 93  SPSQNVGYAVATALPKEAHETPMLSLDKTKSVEDLQSFL-------QGQEG-----ILSW 140

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  I + Y++GK + A  RG+G  GE V+   +    +P  L +     + VRGE +
Sbjct: 141 KLDGLTIVLHYQEGKLLKAVTRGNGIIGELVTENAKTFQNLP--LQIPFKGHLVVRGEAF 198

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-------TDITRYLNFFVHGLGK 245
           IS +DF  +N+E+   G K Y NPRN  SG +R+L+P         I+ +        GK
Sbjct: 199 ISYSDFERINEELPEEGAK-YKNPRNLCSGSVRQLDPKVTKERRVQISLFSLVLAEEEGK 257

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             + F     E  + +   GF V +  R+      I     E   +     +  DGLV  
Sbjct: 258 APD-FHNQHEEEFRFLEKQGFSVVH--RKMVNAENIQEAVAEFSKLMPKNDFPSDGLVLL 314

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
            ++ +  + LG  A+ PR  I+ K+ +++ +T+LL ++    RTG++ PVA   PV + G
Sbjct: 315 YNDIAYGESLGRTAKFPRNAIAFKWQDEEETTKLLSVEWSPSRTGLINPVAIFTPVELEG 374

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++ A+LHN  Y + L            + +GD + V +A  +IP+     + E    +
Sbjct: 375 TVVSRASLHNITYCEDL-----------ALGIGDEITVYKANMIIPQ-----IGENKTKS 418

Query: 426 QPFSFPSFCPICQ--SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
                P  CP CQ  +++V+D   K       H       C A+++++   FVSRDA NI
Sbjct: 419 GNLEIPKHCPACQGETKIVKDKETKMLYCTNPH-------CPAKRIKQFALFVSRDALNI 471

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGL +  L+ +       F    P D+F+L++ ++    +I  + GFG  S   + ++I 
Sbjct: 472 EGLSEMTLEKWLGR---GFIQEFP-DLFSLEKYRE----EIIGMEGFGLKSFEKIQENIE 523

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +  +L R ++ LGI  +G    R LA      + F+Q+   ++    ++   +++V  
Sbjct: 524 KAKTSNLGRLLYGLGIEGIGVSNGRMLA------EAFSQDPYKLMDATKEE---ILQVKG 574

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G ++A +I E++Q   N   V  LL  +   + + EK   S I  K  V TG +     
Sbjct: 575 IGQVLADSIAEYFQKEENRRIVLELLSIL--HLEKEEKEEKSGISGKHFVITGAVHHFPN 632

Query: 664 HKA-QEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719
            KA +E + + G   S+ +S+ TD +I  D+    SK +KA++LG+ I+ EE+FL LL+
Sbjct: 633 RKALEEEIRKAGGQSSSSVSQNTDYLINNDSTSGSSKNKKAKELGIPIITEEEFLKLLE 691


>gi|166030629|ref|ZP_02233458.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC
           27755]
 gi|166029631|gb|EDR48388.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC
           27755]
          Length = 647

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 194/700 (27%), Positives = 348/700 (49%), Gaps = 81/700 (11%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YYQ ++ I+ + EYD L    D +     +L  +   N P  ++G E+   L K  H  
Sbjct: 14  AYYQDAEEIMSNYEYDKL---YDELQELERELGITLS-NSPTVRVGYEVVSELPKERHES 69

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL+K  ++E+L+ F+          D  ++   +  K+DG  I + Y  G    A  
Sbjct: 70  PMLSLDKTKDVEELKNFVG---------DQKAL---MSWKMDGLTIVLTYRGGHLFKAVT 117

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RG+G  GE ++   +    +P  +S    E+I +RGE  I   DF  +N E I      Y
Sbjct: 118 RGNGEVGEVITNNAKVFKNVPLQISYQ-GELI-LRGEAVIGYKDFEKIN-EQIQEAEAKY 174

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNN 270
            NPRN  SG +R+LN ++IT  R + F+   L    ++ F   +   ++ ++  GF V  
Sbjct: 175 KNPRNLCSGSVRQLN-SEITAKRNVKFYAFTLVSAKDVDFHNSRACQMEWLKEQGFEVVE 233

Query: 271 GVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
                  +H ++    E + I+     +   +  DGLV   D+ +  + LG  ++ PR  
Sbjct: 234 -------YHEVIRDTVEAEVIKFSEKIAENDFPSDGLVLVYDDIAYGRSLGRTSKFPRDS 286

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            + K+A++   T+LL+I+    RTG++ PVA  EPV + G  ++ A++HN   ++ L   
Sbjct: 287 FAFKWADEIRQTKLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISIMEEL--- 343

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV-VRD 444
                   ++ VGD + V +A  +IP++   +      D      P  CP+C  +  +R 
Sbjct: 344 --------ELGVGDEIEVYKANMIIPQIAQNLTRSGVKD-----IPKVCPVCGGKTEIRQ 390

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
           ++        A  CT    C A+ ++    F SRDA NIEGL +  L+ F    D  F I
Sbjct: 391 VSN-----AKALYCTNP-ECQAKHVKAFALFASRDALNIEGLSEATLEKFI---DRGF-I 440

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           +   DIF L + Q+    +I+ + GFG+ S  NL  ++ K +  +L + I++LGI  +G 
Sbjct: 441 KEFTDIFHLDKWQE----EIQTMEGFGEKSYKNLIANVEKAKVTTLPKVIYALGIPGIGL 496

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A+ + +       F+ +++ +I    ++   L  +  VG+++A A V ++Q+ +++ +
Sbjct: 497 ANAKVICR------EFSGDVDRMIHATAEE---LAEIQGVGEVLAGAFVTYFQDEKHVES 547

Query: 625 VEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILS 682
           ++ L+ E+   I + E++ S +I      V TG+++    R + +E +  LG  V+  ++
Sbjct: 548 LKRLIAEL--EIPKEEESESQQIFAGVNFVITGSVEHFANRGEVKELIESLGGKVTGSVT 605

Query: 683 RKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            KT+ +I  D  +  SK +KA +LGV I++EEQF+ ++++
Sbjct: 606 SKTNYLINNDVTSTSSKNKKANELGVPIISEEQFIKMVEE 645


>gi|326201860|ref|ZP_08191730.1| DNA ligase, NAD-dependent [Clostridium papyrosolvens DSM 2782]
 gi|325987655|gb|EGD48481.1| DNA ligase, NAD-dependent [Clostridium papyrosolvens DSM 2782]
          Length = 657

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 202/698 (28%), Positives = 333/698 (47%), Gaps = 87/698 (12%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87
            YYQ +  I+ + EYD L          + +L   E   G      P   +G E+  +L 
Sbjct: 21  AYYQENTEIMPNIEYDKL----------YDELLELEKETGVVLSNSPSIHVGYELLSNLP 70

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H  P LSL+K   +  L+++I       QK         L  K+DG  I + Y+ G 
Sbjct: 71  KERHEKPMLSLDKTKEVGALKEWIGT-----QKG-------ILSWKLDGLTIVLTYQDGH 118

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG G  GE ++   R    +P  +++   + + +RGE  I  +DF+ +N+E+  
Sbjct: 119 LVKAVTRGTGEVGEVITNNARVFRNLP--VTIAYKDTLILRGEAIIRYSDFIKINNEISD 176

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLG 265
           V  K Y NPRN  SG +R+LN    + R + FF   L K   +     +   +  ++  G
Sbjct: 177 VDAK-YKNPRNLCSGSVRQLNNKVTSERNVYFFAFSLVKADNVELENSRASQMNWLKNQG 235

Query: 266 FP-VNNGVRQANTFHGIVSYYNEMKSIRST-LPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           F  V      +N     V ++++  +I +  LP D  GLV   D  +  + LG  A+ PR
Sbjct: 236 FDIVEFKEVTSNDIEETVQWFSQ--NIEANDLPSD--GLVLTFDNIAYGESLGSTAKFPR 291

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
             I+ K+ ++   T LL+I+    RTG++ P+A  EPV + G  ++ A++HN   ++GL 
Sbjct: 292 DSIAFKWRDEIKETTLLEIEWSASRTGLINPIAIFEPVELEGTTVSRASIHNLSIMEGL- 350

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                     ++ +GD + V +A  +IP++ +   N       P   P  CP+C  +   
Sbjct: 351 ----------ELGIGDTIGVYKANMIIPQISE---NLTRSGMAP--IPEECPVCSGKT-- 393

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           ++  + G  V    C     C A+Q++   HFVSRDA NIEGL +  L+           
Sbjct: 394 EIKQENG--VKTLYCVNN-ECLAKQIKSFTHFVSRDAMNIEGLSEATLEKLI----AKGL 446

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           I+  AD+F ++  +     +I  + G G+ S   L  SINK R  +  R ++SLGI +VG
Sbjct: 447 IKELADLFHIEMYKN----EIIEMEGLGEKSFNKLIASINKARKTTAIRLLYSLGIPNVG 502

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A+ + KY      F  + NNI    N D+  LI++  +GDI+A++ + F+ + +   
Sbjct: 503 LSNAKLICKY------FKYDWNNI---ENADFTELIQIGGIGDIMAESFISFFADEKKRI 553

Query: 624 AVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSA 679
            V  +LKE+       E  VS      EN   V TG+++  + R + +  + + G  V+ 
Sbjct: 554 IVHDVLKELE----LEEVQVSQSEQIFENVNFVITGSVEMFKNRDELKGVIEEKGGKVTG 609

Query: 680 ILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFL 715
            ++ KT+ +I  DN    SK +KA++L + I+ E QF+
Sbjct: 610 SVTSKTNYLINNDNLSNSSKNKKAKELNISIITEAQFV 647


>gi|167761341|ref|ZP_02433468.1| hypothetical protein CLOSCI_03749 [Clostridium scindens ATCC 35704]
 gi|167661007|gb|EDS05137.1| hypothetical protein CLOSCI_03749 [Clostridium scindens ATCC 35704]
          Length = 649

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 202/696 (29%), Positives = 339/696 (48%), Gaps = 73/696 (10%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YYQ ++ I+ + EYD    R         +       N P   +G E+   L K  H  
Sbjct: 14  AYYQNAEEIMSNYEYD----RLYDELLKLEEELGLTLSNSPTANVGYEVLSELPKERHER 69

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL+K  ++E+L++F+          D  ++   +  K+DG  I + Y +G+   A  
Sbjct: 70  PMLSLDKTKDVEELKRFVG---------DQKAL---MSWKMDGLTIVLTYREGRLFKAVT 117

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RG+G  GE V+   R    IP  ++     I+  RGE  I   DF  +N+E+  V  + Y
Sbjct: 118 RGNGEVGEVVTNNARVFKNIPLQIAYQGQLIL--RGEAVIGYKDFEKINEEIEDVDAR-Y 174

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNN 270
            NPRN  SG +R+LN  +IT  R + F+   L +   + F   +   +  +   GF V  
Sbjct: 175 KNPRNLCSGSVRQLN-NEITAKRNVKFYAFSLVEAEGVDFYNSRARQMNWLIEQGFEVVE 233

Query: 271 GVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
                 +T    V  ++E K  ++  P D  GLV   D+ +  + LG  ++ PR   + K
Sbjct: 234 FQEVTRDTVEAEVLKFSE-KIAQNDFPSD--GLVLVYDDIAYGQSLGRTSKFPRDSFAFK 290

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           +A++   TRLL+I+    RTG++ PVA  EPV + G  ++ A++HN   ++ L       
Sbjct: 291 WADELRETRLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISIMEEL------- 343

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV-VRDLNPK 448
               ++ VGD + V +A  +IP++   +      D      P  CP+C+ R  VR ++  
Sbjct: 344 ----ELGVGDTIEVYKANMIIPQIARNLTRSGVKD-----IPKNCPVCRGRTEVRQVSN- 393

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
                 A  C     C A+ ++    FVSRDA NIEGL +  L+ F         IR  A
Sbjct: 394 ----AKALYCINP-DCQAKHVKSFALFVSRDALNIEGLSEATLEKFI----SMGYIREYA 444

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           DIF L R ++    +I+ + GFG+ S  NL DSI K R  +L R I+ LGI ++G   A+
Sbjct: 445 DIFHLDRYRE----EIQTMEGFGEKSYQNLIDSIEKARTTTLPRVIYGLGIANIGLANAK 500

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            + K       F  ++  ++    ++   L  +  +G++IA A V+++ +  +   +  L
Sbjct: 501 MICK------EFQYDLEAMLKATVEE---LNAISGIGEVIATAFVDYFSDNVHRKRLRNL 551

Query: 629 LKEVSPSIGRHEKNVSSEIENK-KLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTD 686
           L E+   I + E + +++I N    V TG+++    R++ +E +  LG  V+  ++ KT+
Sbjct: 552 LAEL--IIPKEEADSAAQIFNGVNFVITGSVEHFANRNEVKELIESLGGKVTGSVTSKTN 609

Query: 687 IIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +I  D  +  SK +KA  LG+ I++EE FL ++++
Sbjct: 610 YLINNDVTSTSSKNKKANDLGIPIISEETFLKMVEE 645


>gi|302387645|ref|YP_003823467.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
 gi|302198273|gb|ADL05844.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
          Length = 654

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 216/720 (30%), Positives = 343/720 (47%), Gaps = 100/720 (13%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73
           KEL +L   ++     YYQ S+ I+ + EYD L          + +L   ED  G     
Sbjct: 9   KELVNL---LTAAGKAYYQESREIMSNFEYDRL----------YDELKELEDETGVILSK 55

Query: 74  -PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G ++   L K  H  P LSL+K  ++E L++++             S    L  
Sbjct: 56  SPTQNVGYQVLSELPKEAHETPMLSLDKTKSVESLQEWL------------GSQTGVLSW 103

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGE 190
           K+DG  + + Y +G    A  RG+G  GE ++   +    IP    LNI  + E+  RGE
Sbjct: 104 KLDGLTVVLSYNRGTLQKAVTRGNGEIGEVITNNAKVFSNIP----LNISHMGELILRGE 159

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF----FVHGLG 244
             I  +DF  +N+E+  V  K Y NPRN  SG +R+LN   IT  R +NF     V   G
Sbjct: 160 AVIKYSDFNRINEEIEEVAAK-YKNPRNLCSGSVRQLN-NQITAQRNVNFKAFSLVTAEG 217

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDI--DG 301
                  K Q+E L++    GF V +  +   +T    V  ++  K+I S   YDI  DG
Sbjct: 218 AEFNNSRKEQFEWLKRQ---GFDVVDYEMVTRDTLPEAVETFS--KNISS---YDIPSDG 269

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           LV   D+ +  + LG  ++ PR  I+ K+A++   TRL  I+    RTG++ PVA  +PV
Sbjct: 270 LVLLFDDIAYGEALGRTSKFPRNAIAFKWADEIRETRLDHIEWSASRTGLINPVAIFDPV 329

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  ++ A++HN   ++ L           ++  GD + V +A  +IP++   +    
Sbjct: 330 ELEGTTVSRASVHNLSIMEAL-----------ELGEGDEITVYKANMIIPQIAGNLTR-- 376

Query: 422 HPDAQPFSFPSFCPIC-QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
              ++    P  CP+C  S  +R +N      V +  CT    C A++L+    FVSRDA
Sbjct: 377 ---SKKIRIPDQCPVCGGSTEIRRVND-----VKSLYCTNP-DCQAKRLKGFSLFVSRDA 427

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NI+GL +  L+ F      A  IR  ADIF L++ ++ + T++E   GFG  S  NL  
Sbjct: 428 LNIDGLSEATLEKFI----GAGYIREFADIFHLEQHEE-AITQME---GFGRKSYDNLIQ 479

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++ K  + +L R I+ LGI  +G   A+ L       Q F  +   +     ++   L  
Sbjct: 480 AVKKASHTTLPRLIYGLGIAGIGLANAKMLC------QEFKSDFGKMRKAEEEE---LTA 530

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           VP +G ++A A + +++  +N   V+ LL EV+   G  E       E    V TG++  
Sbjct: 531 VPGIGKVLADAWITYFKEEKNNRMVDRLLSEVTIQ-GDGEVRSGGIFEGMVFVMTGSVNH 589

Query: 661 IQRHKA-QEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFL 717
            +  KA QE +   G   +  ++ +T  +I  D     SK +KA++LGV I++EE F+ L
Sbjct: 590 YENRKALQEDIEAHGGKAAGSVTSRTTYLINNDTTSNSSKNKKAKELGVPIISEEDFIKL 649


>gi|326445394|ref|ZP_08220128.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 687

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 199/739 (26%), Positives = 316/739 (42%), Gaps = 80/739 (10%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L  ++A S   +R E  +  Q +      YY      + D+ YD L+R   A     P  
Sbjct: 4   LPAVQAQSAVSSRTEYEAALQRLRDASRAYYGDGDSPLDDATYDQLRRSVLAWEQENPAE 63

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              + P G    +  +    +  V H+ P LSL+ + + E L  +   + R         
Sbjct: 64  VSPDSPTG----LVADGAAPVGDVAHTTPLLSLDNVSDAEGLTAWGLSVQRRLGHVPQGG 119

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
             FT+EPK+DG  +  RY  G+ V    RG G  GEDVS  I  I  +P  L+L  P  +
Sbjct: 120 --FTVEPKLDGAAVAARYRGGRLVQVITRGVGSHGEDVSHVIGQIDGLPEQLTL--PVTV 175

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG--- 242
           EVRGEV  ++  F   N+   A   + +ANPRN  +G LR    +   R + F+ +G   
Sbjct: 176 EVRGEVAFTQEQFETANEVRAAHNEQVFANPRNGVAGTLRAKGRSYQLR-MTFWAYGAVE 234

Query: 243 LGKTSEIFAKGQY-EMLQKMRCLGFPVNN----GVRQANTFHGIVSYYNEMKSIRSTLPY 297
           L   + + A   + E L  +  +G         G+             + + ++R+ LP 
Sbjct: 235 LDSVAYLPAGATHAETLAAVAAVGIQTTADSPAGLHVVADLASAQQRVDAIAAMRAGLPV 294

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            IDG+V K+D+ + Q   G  +R P W I+ K    +  T L D+  ++GRTG+L P A 
Sbjct: 295 GIDGVVVKLDDATEQAAAGVGSRFPHWAIAFKLPAVERQTVLEDVVWEVGRTGVLAPTAI 354

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L PV I G+ +T ATLHN   I+            RD+ +GD V V +AG++IP+V   +
Sbjct: 355 LAPVEIDGSTVTRATLHNPADIR-----------RRDLHIGDAVTVFKAGDIIPRVQGPV 403

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R   A+    P  CP C   +         K     RC  G AC+   L  + +   
Sbjct: 404 AQLRPEGAREVPLPEVCPNCGGEI--------NKAQERWRCAKGTACALPAL--IGYAAG 453

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R+  +IEGLGK  +    +S    +   I AD+FTL   Q T+ +               
Sbjct: 454 REMLDIEGLGKTYVAALVES---GYVTDI-ADLFTLSAEQLTTASGSAK-------RAAK 502

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L + I   + + L R   +LG+   G  ++R +A+++    +  Q           D  +
Sbjct: 503 LAEQIEAAKALPLSRVFCALGVLGTGRSMSRRIARHFGDMGSIRQA----------DAAA 552

Query: 598 LIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALL--KEVSPSIGRHEKNVSSEIENK 650
           L  V  +G   A  IVE   +      + I A  ++   +E SP+        +  +  K
Sbjct: 553 LRDVEGIGPEKAPVIVEQVASLAPVIDKLIAAGVSMAEPREASPA------GDAGPLAGK 606

Query: 651 KLV----FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII----VGDNPGSKLEKAQ 702
            +V     TG L    R +    + + G    + ++ KT I++     G  P +K  KA 
Sbjct: 607 VVVVTGKMTGPLAAYARAEMTALIERAGGRAGSSVNAKTSILVAAPSAGGKPSTKAIKAA 666

Query: 703 QLGVKIMNEEQFLFLLQQY 721
           +LGV++   E F  L+  +
Sbjct: 667 ELGVEVHTPEDFAELVADF 685


>gi|254383856|ref|ZP_04999203.1| DNA ligase [Streptomyces sp. Mg1]
 gi|194342748|gb|EDX23714.1| DNA ligase [Streptomyces sp. Mg1]
          Length = 696

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 189/727 (25%), Positives = 313/727 (43%), Gaps = 80/727 (11%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E  +  + +      YY     ++ D+ YD L+    A     P    +E   G    
Sbjct: 25  RSEYEAALRRLREASQAYYGDGDSVMDDASYDRLRLALLAWETEHP----AEVAPGSPTT 80

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +  +       V H+   LSL+ +++ E L  +   + R   +       FT+EPKIDG 
Sbjct: 81  LVADGAAPAGDVAHTTRLLSLDNVFDAEGLVAWGASVERRLGRAPAGG--FTVEPKIDGA 138

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +  RY  G+ V    RGDG  GED+S  I  I  +P +L+      +EVRGEV  ++  
Sbjct: 139 AVAARYRGGRLVRIVTRGDGSQGEDISHVIGQIDGLPELLAGE--ATVEVRGEVAFTQEQ 196

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI--FAKGQY 255
           F   N   +A G   +ANPRN  +G LR  +     R + F+ +G  +   +     G  
Sbjct: 197 FEVANAVRVAHGAPVFANPRNGTAGTLRAKDRPYRLR-MTFWAYGAVELEGVPFLPAGAT 255

Query: 256 EMLQKMRCLGFPVNNGVRQANTFH------GIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           +           V          H      G     + M ++R+ LP  IDG+V K+++ 
Sbjct: 256 QAEALAAVAAAGVRTTAAAGAGLHIVDDLAGAQQAVDAMAAMRAELPVGIDGVVIKLNDT 315

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ +G   R P W I+ K    +  T L D+  ++GRTG+L P A L PV I G+ +T
Sbjct: 316 AEQEAIGSGTRFPYWAIAVKLPAVERQTVLEDVVWEVGRTGVLAPTAVLAPVEIDGSTVT 375

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   I+            RD+ +GD V V +AG++IP+V   +   R   A+P  
Sbjct: 376 RATLHNPADIR-----------RRDLHIGDTVTVYKAGDIIPRVQAAVALLRPAGAKPVP 424

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C      ++N    +     RC  G +C+   L  +++   R+  +I+GLGK 
Sbjct: 425 LPETCPRCGG----EINTAQERW----RCAKGTSCALPAL--IEYAAGREMLDIDGLGKT 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +     S D    +   AD+FTL   Q T+ +               L + I   +   
Sbjct: 475 YVAALVDSGD----VTDVADLFTLTLEQLTAASGSSR-------RAAKLAEQIEAAKARP 523

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R   +LG+   G  ++R +A+++++ +          A    D   +  V  +G   A
Sbjct: 524 LSRVFCALGVLGTGRSMSRRIARHFVTME----------AIRRADAAEMQDVEGIGPEKA 573

Query: 610 QAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSE------IENKKLVFT----GTL 658
             IVE       + A+  ++ K ++  +  HE   S+       ++ K +V T    G L
Sbjct: 574 PVIVE------QVAALAPVIDKLIAAGVTLHEPEASATASAGGPLDGKVVVVTGKMAGPL 627

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKAQQLGVKIMNEEQF 714
           +   R +    + + G    + +S +T +++   +    P SK  KA +LGV+++  E F
Sbjct: 628 EGFGRTEMNALIEKAGGRAGSGVSARTSVLVCAPSASGKPSSKAVKAAELGVEVLTPEAF 687

Query: 715 LFLLQQY 721
             L+  Y
Sbjct: 688 AELVADY 694


>gi|254389746|ref|ZP_05004971.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
 gi|197703458|gb|EDY49270.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 719

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 199/739 (26%), Positives = 316/739 (42%), Gaps = 80/739 (10%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L  ++A S   +R E  +  Q +      YY      + D+ YD L+R   A     P  
Sbjct: 36  LPAVQAQSAVSSRTEYEAALQRLRDASRAYYGDGDSPLDDATYDQLRRSVLAWEQENPAE 95

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              + P G    +  +    +  V H+ P LSL+ + + E L  +   + R         
Sbjct: 96  VSPDSPTG----LVADGAAPVGDVAHTTPLLSLDNVSDAEGLTAWGLSVQRRLGHVPQGG 151

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
             FT+EPK+DG  +  RY  G+ V    RG G  GEDVS  I  I  +P  L+L  P  +
Sbjct: 152 --FTVEPKLDGAAVAARYRGGRLVQVITRGVGSHGEDVSHVIGQIDGLPEQLTL--PVTV 207

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG--- 242
           EVRGEV  ++  F   N+   A   + +ANPRN  +G LR    +   R + F+ +G   
Sbjct: 208 EVRGEVAFTQEQFETANEVRAAHNEQVFANPRNGVAGTLRAKGRSYQLR-MTFWAYGAVE 266

Query: 243 LGKTSEIFAKGQY-EMLQKMRCLGFPVNN----GVRQANTFHGIVSYYNEMKSIRSTLPY 297
           L   + + A   + E L  +  +G         G+             + + ++R+ LP 
Sbjct: 267 LDSVAYLPAGATHAETLAAVAAVGIQTTADSPAGLHVVADLASAQQRVDAIAAMRAGLPV 326

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            IDG+V K+D+ + Q   G  +R P W I+ K    +  T L D+  ++GRTG+L P A 
Sbjct: 327 GIDGVVVKLDDATEQAAAGVGSRFPHWAIAFKLPAVERQTVLEDVVWEVGRTGVLAPTAI 386

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L PV I G+ +T ATLHN   I+            RD+ +GD V V +AG++IP+V   +
Sbjct: 387 LAPVEIDGSTVTRATLHNPADIR-----------RRDLHIGDAVTVFKAGDIIPRVQGPV 435

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R   A+    P  CP C   +         K     RC  G AC+   L  + +   
Sbjct: 436 AQLRPEGAREVPLPEVCPNCGGEI--------NKAQERWRCAKGTACALPAL--IGYAAG 485

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R+  +IEGLGK  +    +S    +   I AD+FTL   Q T+ +               
Sbjct: 486 REMLDIEGLGKTYVAALVES---GYVTDI-ADLFTLSAEQLTTASGSAK-------RAAK 534

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L + I   + + L R   +LG+   G  ++R +A+++    +  Q           D  +
Sbjct: 535 LAEQIEAAKALPLSRVFCALGVLGTGRSMSRRIARHFGDMGSIRQA----------DAAA 584

Query: 598 LIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALL--KEVSPSIGRHEKNVSSEIENK 650
           L  V  +G   A  IVE   +      + I A  ++   +E SP+        +  +  K
Sbjct: 585 LRDVEGIGPEKAPVIVEQVASLAPVIDKLIAAGVSMAEPREASPA------GDAGPLAGK 638

Query: 651 KLV----FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII----VGDNPGSKLEKAQ 702
            +V     TG L    R +    + + G    + ++ KT I++     G  P +K  KA 
Sbjct: 639 VVVVTGKMTGPLAAYARAEMTALIERAGGRAGSSVNAKTSILVAAPSAGGKPSTKAIKAA 698

Query: 703 QLGVKIMNEEQFLFLLQQY 721
           +LGV++   E F  L+  +
Sbjct: 699 ELGVEVHTPEDFAELVADF 717


>gi|312601241|gb|ADQ90496.1| DNA ligase [Mycoplasma hyopneumoniae 168]
          Length = 559

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 182/606 (30%), Positives = 298/606 (49%), Gaps = 78/606 (12%)

Query: 149 VYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
           + A  RGDG  GE+V      I    IP+   +N  E +EVRGE+YI  + F +L  E  
Sbjct: 2   IKALTRGDGVFGENVLVNALKINDEFIPK--KINYLEDLEVRGEIYIDNSTFASLQLET- 58

Query: 207 AVGRKPYANPRNAASGILRR---------------LNPTDITRYLNFFVHGLGKTSEIFA 251
               K + NPRNAASGILRR               L      RYL  F + L    +   
Sbjct: 59  ----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKSFFYTLVNPEKHKI 114

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q++ +  +R LGF VN   ++ +    + ++ + +K  R  L Y+IDG+V KV+EFS+
Sbjct: 115 NSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYNIDGVVVKVNEFSI 174

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T  A++EPV + G+ I++A
Sbjct: 175 YEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKIEPVTLAGSKISSA 234

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
            L N  YI+ L            + +   V +K+AGE+IP+++  + N  +P    FS  
Sbjct: 235 ILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVHN--YPKTN-FSVV 280

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S +V   N ++G       C     C    L+++ HF S++A NIE L ++++
Sbjct: 281 KNCPKCNSELV---NSESG---LDQFCQNQF-CPEIILQKIVHFCSKNALNIESLAQKRI 333

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN---ILGFGDV-------SVTNLYDS 541
             F +       I    DIF L+ + +    ++ N   +L   +        S+  L + 
Sbjct: 334 KKFLEKG----LISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQSMQIKSIMKLLNE 389

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + K +NI   R IF LGIR+VG + A+ L++Y           +NI    N D+  L   
Sbjct: 390 VEKAKNIDFYRLIFGLGIRNVGLKAAKILSRY----------ASNISELRNLDFNLLKNQ 439

Query: 602 PLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
              G +I +++++++ N +N   +  +E +      +   ++ N  +         +G L
Sbjct: 440 YDFGPVIIESLIDYFNNQKNSEQLNCLETVGFSFKTTFLTNQSNSWAS-----FAISGKL 494

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            K  R +    + + GA     L++KTD +++G + GSK+EKA++ G+KI+NE QF  L+
Sbjct: 495 SK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIKIINEVQFFDLI 553

Query: 719 QQYNTT 724
           +    T
Sbjct: 554 KNSKKT 559


>gi|323226774|gb|EGA10965.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 338

 Score =  231 bits (588), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 214/374 (57%), Gaps = 42/374 (11%)

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVARLEPV + G L++NATLHN D I+ L            +R+GD+V+++RAG+
Sbjct: 1   TGAITPVARLEPVQVAGVLVSNATLHNADEIERLG-----------LRIGDKVVIRRAGD 49

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+VV+++++ER  + +P  FP+ CP+C S    D+    G+  A  RCTGGL C AQ+
Sbjct: 50  VIPQVVNVVLSERPEETRPIVFPTHCPVCGS----DVERVEGE--AVTRCTGGLICGAQR 103

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
            E LKHFVSR A +++G+G + +D   + E     +  PAD+F L      +  K+  + 
Sbjct: 104 KESLKHFVSRRAMDVDGMGDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLD 153

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G  S  N+ +++ K +  +  RF+++LGIR VG   A  LA Y+ + +          
Sbjct: 154 RMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ------- 206

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVS 644
           A   D+   L +VP VG ++A  +  F+    N   +  LL E     +P +  + + + 
Sbjct: 207 AATIDE---LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEID 262

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           S    K +V TG+L ++ R  A+  +  +GA V+  +S+KTD++I G+  GSKL KAQ+L
Sbjct: 263 SPFAGKTVVLTGSLSQMSRDDAKARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQEL 322

Query: 705 GVKIMNEEQFLFLL 718
           G+ +++E + + LL
Sbjct: 323 GITVIDEAEMIRLL 336


>gi|168334213|ref|ZP_02692416.1| DNA ligase, NAD-dependent [Epulopiscium sp. 'N.t. morphotype B']
          Length = 639

 Score =  231 bits (588), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 181/652 (27%), Positives = 313/652 (48%), Gaps = 71/652 (10%)

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N    KIG  ++  L   +H    LSL+K   I+ L+ F+                  L 
Sbjct: 54  NSVTQKIGHTVSNELVTKSHDTSILSLDKTKKIDILQNFLGNEEGL------------LS 101

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + I+Y+ G  + A  RGDG  GEDV+A  +    +P  L +   + + +RGE 
Sbjct: 102 YKLDGLTVVIKYDNGNLIEAVTRGDGQVGEDVTANAKTFRNLP--LKIKYKDKLTIRGEA 159

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I+ ++F  +N     V    Y NPRN  SG +R+L+ +    R ++F    + K  + F
Sbjct: 160 IITNSNFARIN----MVEDNKYKNPRNLCSGSVRQLDSSVTAKRNIDFICFAVMKCDKNF 215

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
              + EML+ ++  GF V    V    T   +V  +    + +    +  DGLV   ++ 
Sbjct: 216 VTKK-EMLKFLKQQGFAVVEAEVVTDKTLKTVVEKFTANITNKD---FQADGLVLSFNDI 271

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +  K LG  ++ P+  +++K+ + Q  T L  I+    RTG + PVA    V++ G  +T
Sbjct: 272 AYSKSLGVTSKFPKDSMAYKWKDIQKETILEAIEWNTSRTGKINPVAVFAAVDLEGTTVT 331

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           +A++HN   ++ L            + +GDR++V +A  +IP+++     E      P +
Sbjct: 332 HASIHNISMVEEL-----------KLGLGDRIIVYKANMIIPQIL-----ENLSQTGPVA 375

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ C  C    +     +T  L       G   C  +QL++L HFVSR+A +I+GL + 
Sbjct: 376 IPNVCSKCGGNTIIKQEKETKTLYC-----GNPNCLEKQLKQLVHFVSRNAMDIKGLSEA 430

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+           I   ++I+++++ +     +I ++ GFG+ S T L  SI+K R ++
Sbjct: 431 ILE--------KLPINDVSEIYSIEKYKD----EIISMRGFGEKSYTKLVKSIDKSRKVA 478

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+ +LGI  VG E A+ + KY      F   ++ I A + ++   L  +  +G +IA
Sbjct: 479 LHRFVTALGIPQVGVENAKLICKY------FXDNLDAIRAASEEE---LHDIEGIGSLIA 529

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA-QE 668
           + I  ++ N  N   ++ LL E+     + E N SS ++ K    TG L   +  +A Q+
Sbjct: 530 KEIYRYFNNEENKQLIDKLLMEI--KFEQKETNSSSSLDGKIFAITGKLNYFENRQALQK 587

Query: 669 YVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + Q G  VS  +S KT  +I  +  +   K  KA +L + I++EE F+ +L
Sbjct: 588 KIEQCGGKVSESISSKTSYLINNEINSTSKKNSKAHELSIPIISEEDFVKML 639


>gi|154502352|ref|ZP_02039412.1| hypothetical protein RUMGNA_00165 [Ruminococcus gnavus ATCC 29149]
 gi|153796977|gb|EDN79397.1| hypothetical protein RUMGNA_00165 [Ruminococcus gnavus ATCC 29149]
          Length = 655

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 205/718 (28%), Positives = 346/718 (48%), Gaps = 79/718 (11%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-PDLARSEDPN 72
           +E  +K +  L + ++     Y Q    I+ + EYD L    + +       LA S    
Sbjct: 1   MEAKKKRMQELVELLNRARRAYEQEDTEIMSNYEYDRLYDELEGLERELGTTLASS---- 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G E+   L K  H  P LSL+K  ++E L+ F+       QK         +  
Sbjct: 57  -PTVNVGYEVLSELPKERHEKPMLSLDKTKDVEQLKSFLGE-----QKA-------VISW 103

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRG 189
           K+DG  I + Y+ G+   A  RG+G  GE ++   +    +P    L IP   E+I +RG
Sbjct: 104 KMDGLTIVLTYQNGRLQKAVTRGNGEVGEVITNNAKVFRNLP----LQIPYQGELI-LRG 158

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247
           E  I   DF  +N+++  V  + Y NPRN  SG +R+LN  +IT  R + FF   L K  
Sbjct: 159 EAVIGYKDFERINEQIEDVDAR-YKNPRNLCSGSVRQLN-NEITARRNVKFFAFTLVKAD 216

Query: 248 EI-FAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              F   + + L  +   GF V  + +    +    V++++E + + +  P D  GLV  
Sbjct: 217 GAEFENSRMQQLSWLEKQGFEVVEHHLADRASIEEEVAWFSE-QIVHNDFPSD--GLVLV 273

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
            D+ +  + LG  A+ PR   + K+A++   T LL+I+    RTG++ PVA  EPV + G
Sbjct: 274 YDDIAYGQSLGTTAKFPRDSYAFKWADEIRETTLLEIEWSPSRTGLINPVAIFEPVELEG 333

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A++HN   ++ L           ++ VGD + V +A  +IP++ + +      D 
Sbjct: 334 TTVSRASVHNISIMEDL-----------ELGVGDVIQVYKANMIIPQIAENLTRSGVKD- 381

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P  CP+C       +  +T  L     CT    C A+ L+    FVSRDA NIEG
Sbjct: 382 ----IPQVCPVCGGATKIKMENETKTLY----CTNP-ECQAKHLKSFALFVSRDAMNIEG 432

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           L +  L+ F       F IR   DI+ L R ++T    I+ + GFG+ S   L  S+   
Sbjct: 433 LSEATLEKFIGE---GF-IRDFTDIYHLDRYEET----IKTLEGFGEKSYAKLITSVENS 484

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R+ ++ + I+SLGI ++G   A+ + +   ++ N  Q +             L+ +  VG
Sbjct: 485 RSTTMPKVIYSLGIANIGLSNAKMICR---AFDNDPQRMMQATVE------ELVDIQGVG 535

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QR 663
           ++IA+  V+++ +  +    + LL+EV   + + E   S++I EN   V TG+++    R
Sbjct: 536 EVIARTFVDYFSDETHRDLFKRLLQEV--KLQKEEGEESAQIFENMNFVITGSVEHFANR 593

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + +E +   G  V+  ++ KT+ +I  D  +  SK +KA++L V I++E QFL +L+
Sbjct: 594 REVKEIIESRGGKVTGSVTGKTNYLINNDVQSASSKNKKAKELNVPIISESQFLEMLE 651


>gi|218678588|ref|ZP_03526485.1| NAD-dependent DNA ligase LigA [Rhizobium etli CIAT 894]
          Length = 264

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 114/259 (44%), Positives = 169/259 (65%), Gaps = 4/259 (1%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVRFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+    ++G   +++   V H+ P LSL+  ++ ED++ F+  IYRF  +  D SI F
Sbjct: 68  DSPS---RRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASIYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ S
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244

Query: 248 EIFAKGQYEMLQKMRCLGF 266
           ++ A  Q+     ++ LGF
Sbjct: 245 DMPADTQFRHGADLQGLGF 263


>gi|332992914|gb|AEF02969.1| DNA ligase, NAD-dependent [Alteromonas sp. SN2]
          Length = 404

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/345 (37%), Positives = 200/345 (57%), Gaps = 10/345 (2%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++EQA+    SL  +I+ ++  YY    P + D++YD   +   +I   FP+L     P+
Sbjct: 4   TLEQAKARAESLRGQINEYNYQYYVLDAPTVPDAQYDRDMQELISIEKQFPELQSVSSPS 63

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               K+GG    +  +VTH +P LSL+  ++   L  F  RIY   + KD+  + F+ EP
Sbjct: 64  ---QKVGGSALSAFEQVTHEVPMLSLDNAFDDVSLLAFEKRIYD--RLKDNKELGFSCEP 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           K+DG  ++I YE G+ V AA RGDG  GE+++  +R I  +P ++   N P  +EVRGEV
Sbjct: 119 KLDGLAVSILYENGEMVRAATRGDGQVGENITTNVRTIANVPLKLRGENYPSRLEVRGEV 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEI 249
           ++ K  F ALND   A   K +ANPRNAA+G LR+L+      R L F+ + LG  T E 
Sbjct: 179 FMPKKGFEALNDYQRANDGKVFANPRNAAAGSLRQLDSKVTAKRPLMFYAYSLGVVTPED 238

Query: 250 FAKGQYEM--LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F    +    L ++   G P+   +  A    G ++YY  + ++R  LPYDIDG+V+KVD
Sbjct: 239 FELPHHHSARLAQLGEWGIPLCPDIDTAEGGKGCLAYYQRILTLRDDLPYDIDGVVFKVD 298

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
           + S+Q+ LG  AR+PRW I+ KF  ++  T+LLD++ Q+GRTG +
Sbjct: 299 DISVQQTLGFVARAPRWAIAQKFPAQEEITKLLDVEFQVGRTGAM 343


>gi|253797891|ref|YP_003030892.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435]
 gi|253319394|gb|ACT23997.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435]
          Length = 474

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 242/488 (49%), Gaps = 36/488 (7%)

Query: 234 RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKS 290
           R L    HGLG          ++    +R  G PV+     A    G+   + Y+ E   
Sbjct: 12  RRLRMICHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH-- 69

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  + ++IDG+V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG
Sbjct: 70  -RHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTG 128

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TP A + PV + G+ +  ATLHN   IK         R G  + +GD V++++AG+VI
Sbjct: 129 RITPFAFMTPVKVAGSTVGQATLHNASEIK---------RKG--VLIGDTVVIRKAGDVI 177

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+V+  +V  R    + F  P+ CP C S +  +   K G   A  RC     C  Q  E
Sbjct: 178 PEVLGPVVELRDGSEREFIMPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRE 232

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
           R+ H  SR+  +IE LG +      +++     I    ++F L  R    T       G 
Sbjct: 233 RVFHVASRNGLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGE 288

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              +   L  +++K +   L R + +L IRHVG   AR+LA  + S       ++ I A 
Sbjct: 289 LSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAA 341

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
           + D    L  V  VG  IA A+ E++    +   V+         +   +++V   +   
Sbjct: 342 STD---QLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGL 398

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+L    R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++
Sbjct: 399 TIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILD 458

Query: 711 EEQFLFLL 718
           E+ F  LL
Sbjct: 459 EDGFRRLL 466


>gi|225028066|ref|ZP_03717258.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353]
 gi|224954614|gb|EEG35823.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353]
          Length = 653

 Score =  230 bits (586), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 212/722 (29%), Positives = 357/722 (49%), Gaps = 90/722 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QAR  +  L + ++     YYQ  + +  + EYD L     A+  A   +  S+ P    
Sbjct: 4   QAR--MKKLVEVLNQASKAYYQEDRELFSNKEYDELYDELQAL-EAETGIVMSQSPT--- 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G E+   L K TH  P LSL+K  + E LR         W  + +      L  K+D
Sbjct: 58  QNVGYEVLSELEKETHESPMLSLDKTKSPEALRD--------WLGEKEG----LLSWKMD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEVYI 193
           G  + + Y  G    A  RG+G  GE ++   R    +P      IP   EV  RGE  I
Sbjct: 106 GLTVVLTYRDGVLQKAVTRGNGVVGEVITNNARVFKNLPA----KIPFAGEVVLRGEAVI 161

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS--EI 249
             +DF  +N+ +  V  + Y NPRN  SG +R+LN  ++T  R + FF   L K    E+
Sbjct: 162 KYSDFKKINEGIEDVDAR-YKNPRNLCSGSVRQLN-NEVTAKRNVFFFAFALVKAEGREL 219

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
               +  ML  ++ LGF +    R       G +  ++E K + +  P D  GLV   D+
Sbjct: 220 ENSVESNMLW-VQNLGFEIVPYKRVDRENIMGEIQNFSE-KIVENDFPSD--GLVLIYDD 275

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +    LG  A+ PR  I+ K+A+++A TRLL I+    RTG++ P+A  EPV + G  +
Sbjct: 276 IAYGISLGRTAKFPRNSIAFKWADEEAETRLLHIEWSPSRTGLINPIAVFEPVELEGTTV 335

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN   ++GL           ++   D + V +A  +IP++ + +   +    QP 
Sbjct: 336 SRASLHNISIMEGL-----------ELGENDHIKVYKANMIIPQIAENLT--KSGTCQPI 382

Query: 429 SFPSFCPIC--QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
                CP C   + V  + N KT   V  +       CSA++++   H+VSRDA NI+GL
Sbjct: 383 ---EHCPACGGATEVRIENNVKTLYCVNPY-------CSAKKVKLFSHYVSRDAMNIDGL 432

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            +  L    K  +  F   +  D++ L++ ++    +I  + G+G+ S  NL  SI K R
Sbjct: 433 SEATL---MKMIEQGFLSEL-NDLYNLEQYKE----QIIAMDGYGEKSYNNLMQSIEKSR 484

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  L RF++ +GI +VG+  AR L ++      F   + N+   + ++   + ++  +G+
Sbjct: 485 DTQLFRFVYGIGILNVGSSNARLLCRH------FGNSLENLRGASVEE---MTQIDGIGE 535

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------NKKLVFTGTLQK 660
           +IA ++ ++++N  N    + LL+++ P +   E+NVS+  E      +K  V TGT++ 
Sbjct: 536 VIATSVHDYFENEHN----QKLLEKLLPYLHFEEENVSAGGEQEQSLLDKTFVITGTVEH 591

Query: 661 I-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFL 717
              R + +E +  LG  V+  +S+KTD +I  DN    SK +KA++LG+ ++ EE+FL +
Sbjct: 592 FANRKELKEKIESLGGKVTGSVSKKTDYLINNDNMSSSSKNKKAKELGIPVITEEEFLSM 651

Query: 718 LQ 719
           ++
Sbjct: 652 IE 653


>gi|297250739|ref|ZP_06934237.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768]
 gi|296838226|gb|EFH22164.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768]
          Length = 539

 Score =  230 bits (586), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 167/557 (29%), Positives = 260/557 (46%), Gaps = 145/557 (26%)

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
           M+  R  LPY+IDG+V KV+  + Q++LG  +R+PRW I+HKF  ++  T +  ID+QIG
Sbjct: 1   MQQKRPELPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEETLTVVEAIDVQIG 60

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG +TPVARL+PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG
Sbjct: 61  RTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAG 109

Query: 408 EVIPKVVDIIVNERH---------------------------------PDAQPFSFPSFC 434
           +VIP+VV +I   R                                  P  +P+  P+ C
Sbjct: 110 DVIPEVVRVIFERRPMQETDVTGLSDGIGHRQDDLFAEAPAANQTQSVPLHKPYRLPTRC 169

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC+S + R+     G+ VA  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++  
Sbjct: 170 PICRSEIERE----EGEAVA--RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQL 223

Query: 495 FKSEDPA--FSIRIPADIFTLQRRQQTSTTKIENI--LGFGDVSV--------------T 536
             ++D    F+     DI TLQ+ ++ +   +  +  +     SV               
Sbjct: 224 V-AQDLVRHFADLYRLDIPTLQKMKEAADKTVAELDQMPSEGSSVGASGKHKKQPTKWAE 282

Query: 537 NLYDSINKRRNISLERFIFSLGIRH--------------------------------VGA 564
           N+   I   +   L RF+F+LGIRH                                +G 
Sbjct: 283 NILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGT 342

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP-----------------LVGDI 607
            +A S+A ++   +  A  I+ ++A         + +P                  + + 
Sbjct: 343 VVAHSIAHFFAQAEQQAM-IDELLAAGVTPQTQAVTIPPARHAEPQRWIARLPDFKISEN 401

Query: 608 IAQAI-------VEFYQN--------------PRNICAVEALLKEVS--PS---IGRHEK 641
            AQA+       +E  QN              P+N   +E L    +  PS     +   
Sbjct: 402 KAQALWELAGKNIEGLQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSD 461

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
            ++  +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA
Sbjct: 462 GINKAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKA 521

Query: 702 QQLGVKIMNEEQFLFLL 718
             LGV +++E + L LL
Sbjct: 522 NALGVSVLSEAELLTLL 538


>gi|167745884|ref|ZP_02418011.1| hypothetical protein ANACAC_00578 [Anaerostipes caccae DSM 14662]
 gi|167654748|gb|EDR98877.1| hypothetical protein ANACAC_00578 [Anaerostipes caccae DSM 14662]
          Length = 651

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 193/701 (27%), Positives = 340/701 (48%), Gaps = 73/701 (10%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGPLNKIGGEMNL 84
           +S     YYQ ++ ++ + EYD L            +L +  D    + P   +G E+  
Sbjct: 15  LSEASKAYYQENRELMSNFEYDKL-------YDELLELEKETDTVLADSPSIHVGYELLT 67

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
           SL K  HS P LSL+K   +  L +++          D   +   L  K+DG  I + Y+
Sbjct: 68  SLEKEPHSSPMLSLDKTKEVGQLEEWLG---------DQKGL---LSWKLDGLTIVLTYQ 115

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
           +G  + A  RG+G  GE V+   +    +P+ ++     +I  RGE  I  +DF  +N+E
Sbjct: 116 EGVLLKAVTRGNGEVGEVVTNNAKVFVNLPKKIAYKGTLVI--RGEAVIHYSDFRRMNEE 173

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKM 261
           M  +  + Y NPRN  SG +R+LN  ++T  R + F+   +    ++ F     E     
Sbjct: 174 MEDLDSR-YKNPRNLCSGSVRQLN-NEVTAKRNVRFYGFSVADVPDVDFHNSVEEKFIWA 231

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           R LGF + + V  A T   +                  DGLV   D+ +  + LG  A+ 
Sbjct: 232 RSLGFDIVDYV--AVTKDTVAEEVERFSQAIENNDQPSDGLVLIYDDIAYGRSLGTTAKF 289

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PR  I+ K+A++ A T L +I+    RTG++ PVA  +PV + G+ ++ A+LHN   ++ 
Sbjct: 290 PRDSIAFKWADEIAETTLKEIEWSPSRTGLINPVAIFDPVELEGSTVSRASLHNISVMEE 349

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
           L           ++ VGD++ V +A  +IP++ +   N+      P   P  CP C  + 
Sbjct: 350 L-----------ELGVGDQISVYKANMIIPQLAE---NQTRSGDAP--IPDTCPACGGKT 393

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
             +       LV  ++      CSA++++   HFVSRDA N++GL +  L    K  D  
Sbjct: 394 EIEEENGIRTLVCPNQF-----CSAKKIKLFSHFVSRDAMNVDGLSEASL---HKMMDKG 445

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
               +  D+FTL+  ++    +I  + GFG+ S  NL D+I + + ++L +F++SLGI +
Sbjct: 446 LLNEL-YDLFTLKEHKE----EIIEMEGFGEKSFHNLADAIERAKKVTLPKFLYSLGIAN 500

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   A+ + +Y      F  +++ I     +D+ +   +  +G II +A+  +++   N
Sbjct: 501 VGLSNAKLICRY------FEDDLDAIRNAEAEDFTA---IDGIGPIIGEAVSGYFRLENN 551

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAI 680
              V+ LL+ V     R  +     ++ K  V TG+L+  + R + QE +  LG   +  
Sbjct: 552 KQTVDRLLQYVEIE-KRQTEETEKLLDGKTFVITGSLEHYENRKQLQEQIEILGGKATGS 610

Query: 681 LSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +++KTD +I    ++  SK +KA +L + I+ EE+F+ +++
Sbjct: 611 VTKKTDYLINNNKNSASSKNKKAMELSIPIITEEEFMDMIK 651


>gi|220929395|ref|YP_002506304.1| DNA ligase, NAD-dependent [Clostridium cellulolyticum H10]
 gi|254781296|sp|B8I3I1|DNLJ_CLOCE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219999723|gb|ACL76324.1| DNA ligase, NAD-dependent [Clostridium cellulolyticum H10]
          Length = 657

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 194/698 (27%), Positives = 340/698 (48%), Gaps = 81/698 (11%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87
            YYQ +  I+ + EYD L          + +L   E   G      P   +G E+  +L 
Sbjct: 21  AYYQENTEIMSNIEYDKL----------YDELLELEKETGVVLSNSPSIHVGYELLSNLP 70

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H  P LSL+K  ++  L++++       QK         L  K+DG  I + Y+ G 
Sbjct: 71  KERHEKPMLSLDKTKDVGTLKEWLGT-----QKG-------ILSWKLDGLTIVLTYQDGH 118

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG G  GE ++   R    +P  ++     I+  RGE  I  +DF+ +N+E+  
Sbjct: 119 LVKAVTRGTGEEGEVITNNARVFRNLPVTIAYKGTLIL--RGEAIIRYSDFIKINNEIAD 176

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLG 265
           VG K Y NPRN  SG +R+LN    + R + FF   L K   +     +   +  ++  G
Sbjct: 177 VGVK-YKNPRNLCSGSVRQLNNKVTSERNVYFFGFSLVKADNVELDNSRASQMNWLKNQG 235

Query: 266 FP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           F  V+     ++     V ++++  +I +   +  DGLV   ++ +  + LG  A+ PR 
Sbjct: 236 FDIVDFKEVTSSNIEETVQWFSQ--NIEAN-DFPSDGLVLTFEDIAYGESLGSTAKFPRD 292

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I+ K+ ++   T LL+I+    RTG++ P+A  EPV + G  ++ A++HN   ++GL  
Sbjct: 293 SIAFKWRDEIKETTLLNIEWSPSRTGLINPIAIFEPVELEGTTVSRASIHNISIMEGL-- 350

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                    ++ +GD + V +A  +IP++ +   N       P   P  CP+C+ +   +
Sbjct: 351 ---------ELGIGDTIGVYKANMIIPQISE---NLTRSGMAP--IPEECPVCKGKT--E 394

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
           +  + G  V    C     C A+Q++   HFV RDA N+EGL +  L+           I
Sbjct: 395 IKQENG--VKTLYCVNN-ECLAKQIKSFTHFVGRDAMNMEGLSEATLEKLI----AKGLI 447

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           +  AD+F +++ +     +I  + G G+ S   L  SINK R  +  R ++SLGI +VG 
Sbjct: 448 KELADLFHIEKYKN----EILELEGLGEKSFNKLITSINKARKTTAVRLLYSLGIPNVGL 503

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A+ + +Y      F  + N I    N ++  LI++  +GDI+A++ + F+ + +    
Sbjct: 504 SNAKLICRY------FKYDWNKI---ENAEFSELIQIGGIGDIMAESFIRFFSDEKKKVI 554

Query: 625 VEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILS 682
           V+ +L E+   +   + + S +I EN   V TG++++ + R + ++ + + G  V+  ++
Sbjct: 555 VQDVLNEL--ELEEVQLSQSEQIFENLNFVITGSVEQFKNRDELKDVIEEKGGKVTGAVT 612

Query: 683 RKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLL 718
            KT+ +I  DN    SK +KA++L + I+ E QFL  L
Sbjct: 613 SKTNYLINNDNMSNSSKNKKAKELNISIITEAQFLEWL 650


>gi|213024998|ref|ZP_03339445.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 262

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 114/278 (41%), Positives = 175/278 (62%), Gaps = 27/278 (9%)

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           +DIDG+V KV+  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVA
Sbjct: 10  FDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVA 69

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           RLEPV + G L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV++
Sbjct: 70  RLEPVQVAGVLVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNV 118

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +++ER  + +P  FP+ CP+C S    D+    G+ V   RCTGGL C AQ+ E LKHFV
Sbjct: 119 VLSERPEETRPIVFPTHCPVCGS----DVERVEGEAVT--RCTGGLICGAQRKESLKHFV 172

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR A +++G+G + +D   + E     +  PAD+F L      +  K+  +   G  S  
Sbjct: 173 SRRAMDVDGMGDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQ 222

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
           N+ +++ K +  +  RF+++LGIR VG   A  LA Y+
Sbjct: 223 NVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYF 260


>gi|330879787|gb|EGH13936.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 347

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/341 (36%), Positives = 192/341 (56%), Gaps = 13/341 (3%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137
            +  +V H +P LSL   +   D+ +F  R+         +       + ++ EPK+DG 
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  G  V  A RGDG +GED+S  +R +  IP ++     P+++EVRGEV++SK 
Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254
            F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F  +GLG+TS   A   
Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L+ ++  G PV++ ++ AN     + YY ++   R TL Y+IDG+V+KV+  + Q++
Sbjct: 247 IGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPV
Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPV 347


>gi|163816857|ref|ZP_02208220.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759]
 gi|158448114|gb|EDP25109.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759]
          Length = 678

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 190/697 (27%), Positives = 332/697 (47%), Gaps = 73/697 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY     I+ + EYDAL     A+      +      N P  K+G E+   L K  H  P
Sbjct: 44  YYMEDTEIMSNLEYDALYDELSALEKETGMVM----SNSPTVKVGYEVVSELPKEAHEHP 99

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+K  ++  L  ++       QK         +  K+DG  + + YE G+ + A  R
Sbjct: 100 MLSLDKTKDVGALASWLGG-----QKG-------VISWKMDGLTVVLTYENGEMIKAVTR 147

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           G+G  GE ++   +    +P     +IP    + +RGE  I  +DF A+N E I      
Sbjct: 148 GNGEIGEVITNNAKVFANVPH----HIPYKGKLTIRGEAVIKYSDFNAIN-EKITDAESK 202

Query: 213 YANPRNAASGILRRL-NPTDITRYLNFFVHGL--GKTSEIFAKGQYEMLQKMRCLGFPV- 268
           Y NPRN  SG +R+L N     R ++FF   L  G+  +     +Y+ L  +   GF V 
Sbjct: 203 YKNPRNLCSGSVRQLDNKITKERNVHFFAFNLVDGEDVDFHNSFKYQ-LDWLEQQGFTVV 261

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
            + +  +      V  ++E K   +  P D  GLV  +D+ +  + LG  A+ PR  ++ 
Sbjct: 262 EHYLTDSAAIPDKVREFSE-KITENDFPSD--GLVLMLDDLAYGRSLGTTAKFPRNAMAF 318

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K+A+++A T L  ++    RTG++ PVA  +PV + G  ++ A++HN   +K L A G+ 
Sbjct: 319 KWADEEAITHLRYVEWSPSRTGLINPVAVFDPVELEGTTVSRASIHNVSILKSL-ALGE- 376

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSRVVRDLN 446
                    GD + V +A  +IP++   +    +        P+ CP C  ++ +VR+  
Sbjct: 377 ---------GDEIAVYKANMIIPQIARNLTMSGN-----VVIPAACPACGGETEIVREEG 422

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                +   + CT    C A++L+   H+VSR+A NI+GL +  ++ F   +     +  
Sbjct: 423 GAVSGVETLY-CTNQF-CPAKKLKSFSHYVSRNALNIDGLSEATIEKFIDEK----ILEE 476

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           P D++ L   ++     I  + GFG+ S   L  +++  R  ++ R +  LGI +VG   
Sbjct: 477 PPDLYKLAAHRE----HIVELEGFGEKSYNKLVAAVDASRQTNMWRLVNGLGIANVGEAT 532

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A+ +AK++          N++ A    D  + + +  +G +IA+ IV +++N +N   ++
Sbjct: 533 AKLMAKHF---------ANDMDAMKKADVSAYVEIDGIGQVIAEDIVRYFENEKNCAIID 583

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKT 685
            L+ E+  +      +   ++  K  V TG+L   + R++ +E +   G  V+  +S KT
Sbjct: 584 RLMAEL--TFVDEASDTEQDLAGKVFVITGSLTHFENRNQLKELIESRGGQVTGSVSAKT 641

Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +I  D  +  SK +KA+ L V I++EE FL L+ Q
Sbjct: 642 SYLINNDVNSTSSKNKKAKSLDVPIISEEDFLELIGQ 678


>gi|253578000|ref|ZP_04855272.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850318|gb|EES78276.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 614

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 190/659 (28%), Positives = 317/659 (48%), Gaps = 72/659 (10%)

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P   +G E    L K  H  P LSL+K  + E LR+FI                  L 
Sbjct: 18  NSPTVSVGYEAVDQLPKEEHESPMLSLDKTKDREVLREFIGEHKTL------------LS 65

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRG 189
            K+DG  I + YE G    A  RG+G +GE V+   R    +P    L IP    + +RG
Sbjct: 66  WKLDGLTIVLTYENGGLAKAVTRGNGVTGEVVTNNARVFKNVP----LKIPYQGRLVLRG 121

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247
           E  I+ +DF  +N+ +  V  K Y NPRN  SG +R+LN  +IT  R + F+   L    
Sbjct: 122 EAIITYSDFERINESIEDVDAK-YKNPRNLCSGSVRQLN-NEITARRNVRFYAFTLVSAD 179

Query: 248 EI-FAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            + F   +    + ++  GF V       A+T    + Y++   +  +  P D  GLV  
Sbjct: 180 GVDFHNSRARQFEWLKEQGFDVVEYRTVTASTLDEAMEYFSTAIT-ENDFPSD--GLVAL 236

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
            D+ +    LG  A+ PR   + K+A++   T LL+I+    RTG++ PVA  EPV + G
Sbjct: 237 YDDIAYGDSLGRTAKFPRNAFAFKWADEIRETHLLEIEWSPSRTGLINPVAVFEPVELEG 296

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A++HN   +K L            + +GD + V +A  +IP++ + +       +
Sbjct: 297 TTVSRASVHNVSILKEL-----------QLGIGDTITVYKANMIIPQIAENLTR-----S 340

Query: 426 QPFSFPSFCPIC-QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                P  CP C     ++ +N      V A  CT    C+A++++    F SRDA NI+
Sbjct: 341 SKLEIPDTCPACGHGTQIQKVND-----VEALYCTNP-DCAAKKIKSFALFASRDAMNID 394

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GL +  L+ F       F I    DIF + + +     +I  + GFG+ S  NL  S++K
Sbjct: 395 GLSEATLEKFIAR---GF-IHDFGDIFEIGKHRD----EIVEMDGFGEKSFENLMTSLDK 446

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L + I+SLGI ++G   A+ + ++      F  ++   I H + + +S I    +
Sbjct: 447 AKETTLAKVIYSLGIANIGLANAKVICRH------FDDDLEK-IRHADKEEISSIDT--I 497

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QR 663
           G +IA ++ +++ N  N   ++ L+  +  ++ + EK       N   V TG+++    R
Sbjct: 498 GPVIAGSLTDYFSNEDNNRKLDHLMSHL--TVKKEEKTGEQIFRNMNFVITGSVEHFANR 555

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A+E++  LG  V+  ++ KT+ +I  D     SK +KA++LG+ I++EE FL + QQ
Sbjct: 556 AQAKEFIESLGGKVTGSVTSKTNYLINNDTTSNSSKNKKAKELGIPILSEEDFLKMAQQ 614


>gi|268610246|ref|ZP_06143973.1| DNA ligase, NAD-dependent [Ruminococcus flavefaciens FD-1]
          Length = 685

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 194/712 (27%), Positives = 331/712 (46%), Gaps = 92/712 (12%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL--- 75
           KEL+ L   ++   D YY     I+ D EYD L          + +L + E   G +   
Sbjct: 44  KELNEL---LAKAADSYYNTGVEIMSDHEYDEL----------YDELEKLEKETGVILNG 90

Query: 76  ---NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++G E+  SL KV H+   LSL+K  +I++L +++     F            L  
Sbjct: 91  SRTQQVGFEVASSLTKVKHTSRMLSLDKTKSIDELTEWLGGHEGF------------LSW 138

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + ++ G    A  RG+G +GED++   R I  IP  +      +  VRGE  
Sbjct: 139 KLDGLTLVLTFDNGTLTQAVTRGNGETGEDITMNARHIIGIPAKIPFEGHLV--VRGESL 196

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL----GKTS 247
           +   DF  +N  +I  G K Y NPRN   G +R L+      R +NFF   L    G  S
Sbjct: 197 MKYKDFERVNS-LIEDGSK-YKNPRNLCVGTVRNLDSKVTAERNINFFAFNLVSADGYES 254

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             FA    E +Q +  LGF    GV+  ++         E   + +  P D  GLV  +D
Sbjct: 255 NSFA----ERIQWLNSLGFQTVYGVKVDSSVLAEKVAEFEKDIVNNEFPSD--GLVLMLD 308

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +  + LGE + +PR  ++ K+ ++ A T L +I+    RTG+L PVA  +PV + G  
Sbjct: 309 DVAYGRSLGETSHAPRNGMAFKWRDETADTTLREIEWSASRTGLLNPVAIFDPVELEGTT 368

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A++HN   +K L            + +GD + + +A  +IP+V+     E    +  
Sbjct: 369 VSRASVHNVSIVKQL-----------KLGIGDTLSIYKANMIIPQVL-----ENKTGSAS 412

Query: 428 FSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + P  CPIC  +  ++  +     L   ++      C A+ + R +HFV RDA NI GL
Sbjct: 413 AAIPEVCPICGEKTEIKTSDDDVETLFCTNK-----ECPAKHIGRFEHFVQRDAMNIVGL 467

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
               ++ F       F ++  +D + L R ++    KI  + GFG+ S   + +++   R
Sbjct: 468 STATIETFVSE---GF-VKKYSDFYHLDRFRE----KIVTMEGFGERSYQKMQEAVEASR 519

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  + R ++++GI ++G   +R +   Y        ++N I     ++   L  +  +G+
Sbjct: 520 HTEMSRILYAVGIPNIGRAASRLICAEY-------PDVNAIEKLTAEE---LTAIDGIGE 569

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQ-RH 664
           ++A   V+F+ N  N+     LL E+   I   E  +  S I  K  V TG++   + R+
Sbjct: 570 VLANDYVKFFANEDNLTEYHELLTEL--DIAEPEAVSEDSPIAGKTFVITGSVNIWKNRN 627

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQF 714
           + + Y+  +G  VS  +S KT  +I  D+    +K + A+ L V I+ EE+F
Sbjct: 628 ELKAYIESMGGKVSGSVSSKTSYLINNDSQSNSTKNKTAKSLNVPIITEEEF 679


>gi|218659834|ref|ZP_03515764.1| NAD-dependent DNA ligase LigA [Rhizobium etli IE4771]
          Length = 262

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 113/236 (47%), Positives = 158/236 (66%), Gaps = 2/236 (0%)

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V AA RGDG +GE+V+A IR I  IP  L   +P ++E+RGEVY++K+DFLALN +M A
Sbjct: 1   MVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIRGEVYMAKSDFLALNRQMEA 60

Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
            G++ Y NPRN A+G LR+L+     +R L FF +  G+ +E+ A  Q+ M+Q  +  GF
Sbjct: 61  EGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMAEMPADTQFGMVQTFKDWGF 120

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           PVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD   LQ++LG R+RSPRW  
Sbjct: 121 PVNPLMKRLNSVADILTHYDEIGLERPDLDYDIDGVVYKVDSLELQQRLGFRSRSPRWAT 180

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVAR-LEPVNIGGALITNATLHNEDYIKG 381
           +HKF  +QA T +  I+IQ+GRTG LTP  R L      G ++TNATLHNE   +G
Sbjct: 181 AHKFPAEQAFTEVEKIEIQVGRTGALTPGGRGLSRSRSAGVVVTNATLHNEGLHQG 236


>gi|331092462|ref|ZP_08341286.1| DNA ligase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401202|gb|EGG80794.1| DNA ligase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 653

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 197/697 (28%), Positives = 343/697 (49%), Gaps = 75/697 (10%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YYQ +  I+ + +YD L    D +A    +L  +   N P   +G E+   L K  H  
Sbjct: 21  AYYQGATEIMSNFQYDKL---YDELAELEKELNVTL-SNSPTVNVGYEVLSELPKERHEK 76

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL+K   +  L++F+       QK         +  K+DG  I + Y  G+   A  
Sbjct: 77  PMLSLDKTKEVSSLKEFLGN-----QKA-------VISWKLDGLTIVLTYRDGELQKAVT 124

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RG+G  GE ++   +    IP  L ++    + +RGE  I   DF  +N+E+     K Y
Sbjct: 125 RGNGEVGEVITNNAKVFKNIP--LHISYKGELVLRGEAVIGYKDFERINEEIEDADAK-Y 181

Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPV-- 268
            NPRN  SG +R+LN  +IT  R + FF   L K   + F   + E ++ +   GF V  
Sbjct: 182 KNPRNLCSGSVRQLN-NEITAKRNVRFFAFSLVKAEGVDFKNSRNEQMRWLSQQGFDVVE 240

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
           +  V  A+    +  + ++++  ++  P D  GLV   D+ +  + LG  A+ PR   + 
Sbjct: 241 HEEVTSADIEEKVEMFAHKIE--KNDFPSD--GLVLVYDDIAYGQSLGTTAKFPRDSFAF 296

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K+A++   T L +I+    RTG++ PVA  + V + G  ++ A++HN   ++ L      
Sbjct: 297 KWADEIRETTLREIEWSPSRTGLINPVAIFDSVELEGTTVSRASVHNISIMEEL------ 350

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV-VRDLNP 447
                ++ +GD + V +A  +IP++ + +      D      P  CP+C+ +  +R +N 
Sbjct: 351 -----ELGIGDTIQVYKANMIIPQIAENLTRSGVQD-----IPDVCPVCREKTEIRKVNN 400

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                  A  CT    C A++++    F SRDA NI+G+ +  L+ F       F I+  
Sbjct: 401 -----AKALYCTNP-ECQAKRIKSFALFASRDALNIDGMSEATLEKFILE---GF-IKEY 450

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
           ADIF + R ++    KI+++ GFG+ S   L  S+ K R  +L + I+SLGI ++G   A
Sbjct: 451 ADIFHMDRYEE----KIKSMEGFGEKSYNKLQASVEKARTTTLPKVIYSLGIANIGLANA 506

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + + K    +QN A EI N           L ++  VG++IA   VE++   ++    + 
Sbjct: 507 KMICK---EFQNNADEIMNATPER------LNQIDGVGEVIAGTFVEYFSVEKHRKEFQN 557

Query: 628 LLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKT 685
           LL+E+  +I +       +I +  + V TG++     R++ +E +   G  V+  ++ KT
Sbjct: 558 LLREL--TIPKESAEEGKQIFDGIQFVITGSVNHFANRNEVKEVIESKGGKVTGSVTSKT 615

Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +I  D  +  SK +KA++LG+ I++EE+FL +L++
Sbjct: 616 NYLINNDTASTSSKNKKARELGIPIISEEEFLEMLRK 652


>gi|295093347|emb|CBK82438.1| DNA ligase, NAD-dependent [Coprococcus sp. ART55/1]
          Length = 678

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 192/699 (27%), Positives = 335/699 (47%), Gaps = 77/699 (11%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY     I+ + EYDAL    +A+      +      N P  K+G E+   L K  H  P
Sbjct: 44  YYMEDTEIMSNLEYDALYDELNALEKETGMVM----SNSPTVKVGYEVVSELPKEAHEHP 99

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+K  ++  L  ++       QK         +  K+DG  + + YE G+ + A  R
Sbjct: 100 MLSLDKTKDVGALASWLGG-----QKG-------VISWKMDGLTVVLTYENGEMIKAVTR 147

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           G+G  GE ++   +    +P     +IP    + +RGE  I  +DF A+N E I      
Sbjct: 148 GNGEIGEVITNNAKVFANVPH----HIPYKGKLTIRGEAVIKYSDFNAIN-EKITDAESK 202

Query: 213 YANPRNAASGILRRL-NPTDITRYLNFFVHGL--GKTSEIFAKGQYEMLQKMRCLGFPV- 268
           Y NPRN  SG +R+L N     R ++FF   L  G+  +     +Y+ L  +   GF V 
Sbjct: 203 YKNPRNLCSGSVRQLDNKITKERNVHFFAFNLVDGEDVDFHNSFKYQ-LDWLEQQGFTVV 261

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
            + +  +      V  ++E K   +  P D  GLV  +D+ +  + LG  A+ PR  ++ 
Sbjct: 262 EHYLTDSAALPDKVREFSE-KITENDFPSD--GLVLMLDDLAYGRSLGTTAKFPRNAMAF 318

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K+A+++A T L  ++    RTG++ PVA  +PV + G  ++ A++HN   +K L A G+ 
Sbjct: 319 KWADEEAITHLRYVEWSPSRTGLINPVAVFDPVELEGTTVSRASIHNVSILKSL-ALGE- 376

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSRVVRDLN 446
                    GD + V +A  +IP++   +    +        P+ CP C  ++ +VR+  
Sbjct: 377 ---------GDEIAVYKANMIIPQIARNLTMSGN-----VVIPAACPACGGETEIVRE-E 421

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                 V    CT    C A++L+   H+VSR+A NI+GL +  ++ F    D      +
Sbjct: 422 GGAASGVETLYCTNQF-CPAKKLKSFSHYVSRNALNIDGLSEATIEKFI---DEKILEEL 477

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           P D++ L   ++     I  + GFG+ S   L  +++  R  ++ R +  LGI +VG   
Sbjct: 478 P-DLYKLAAHRE----HIVELEGFGEKSYNKLVAAVDASRQTNMWRLVNGLGIANVGEAT 532

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A+ +AK++          N++ A    D  + + +  +G +IA+ IV +++N +N   ++
Sbjct: 533 AKLMAKHF---------ANDMDAMKKADVSAYVEIDGIGQVIAEDIVRYFENEKNCAIID 583

Query: 627 ALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSR 683
            L+ E++    +   E++++ ++     V TG+L     R++ +E +   G  V+  +S 
Sbjct: 584 RLMAELTFVDEVSDTEQDLAGKV----FVITGSLTHFDNRNQLKELIESRGGQVTGSVSA 639

Query: 684 KTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           KT  +I  D  +  SK +KA+ L V I++EE FL L+ Q
Sbjct: 640 KTSYLINNDVNSTSSKNKKAKSLDVPIISEEDFLELIGQ 678


>gi|153855784|ref|ZP_01996785.1| hypothetical protein DORLON_02806 [Dorea longicatena DSM 13814]
 gi|149751911|gb|EDM61842.1| hypothetical protein DORLON_02806 [Dorea longicatena DSM 13814]
          Length = 647

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 204/720 (28%), Positives = 344/720 (47%), Gaps = 89/720 (12%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           KEL SL  + S     YYQ ++ I+ + EYD L          + +L   ED       N
Sbjct: 2   KELVSLLNKAS---RAYYQEAQEIMSNYEYDRL----------YDELKELEDELGITLSN 48

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G E+   L K  H  P LSL+K   +E+L+ F+           D  +  +   
Sbjct: 49  SPTVNVGYEVVSELPKERHESPMLSLDKTKEVEELKNFV----------GDQKVLISW-- 96

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y  GK   A  RG+G  GE ++   +    +P  ++    E+I +RGE  
Sbjct: 97  KMDGLTVVLTYRDGKLYKAVTRGNGEVGEVITNNAKVFKNVPVQIAYQ-GELI-LRGEAV 154

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI- 249
           I   DF  +N E+  V  + Y NPRN  SG +R+LN   IT  R + F+   L +   + 
Sbjct: 155 IGYKDFEKINQEIEDVDAR-YKNPRNLCSGSVRQLN-NQITAKRNVMFYAFTLVQADGVD 212

Query: 250 FAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           F   +   ++ ++  GF  V   +   +T    V+ ++   S  S   +  DGLV   D+
Sbjct: 213 FQNSRACQMEWLKSQGFTTVEYYMVTRDTVEDEVAKFS---SKISENDFPSDGLVLTYDD 269

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +  + LG  A+ PR   + K+ ++   T L +I+    RTG++ PVA  +PV + G  +
Sbjct: 270 IAYGRSLGRTAKFPRDSFAFKWQDEIRETVLREIEWSPSRTGLINPVAIFDPVELEGTTV 329

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A++HN   ++ L           ++ +GD++ V +A  +IP++ + +      D    
Sbjct: 330 SRASVHNISIMEEL-----------ELGIGDKIEVYKANMIIPQIAENLTRSGVKD---- 374

Query: 429 SFPSFCPICQSRV-VRDL-NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
             P  CP+CQ    +R + N K      A  C     C A+ ++    FVSRDA NIEGL
Sbjct: 375 -IPCKCPVCQGETKIRQVGNAK------ALYCMNP-ECQAKHVKSFALFVSRDALNIEGL 426

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            +  L+ F         I   ADIF L + ++    KI+ + GFG+ S   L +SI K R
Sbjct: 427 SEATLEKFISRG----YIHTFADIFHLDQYKE----KIQKMEGFGEKSYKKLTESIEKAR 478

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L R I+SLGI  +G   A+ + +  L Y     ++ +++  + ++   L  +  VG+
Sbjct: 479 TTTLPRVIYSLGIAGIGLANAKVICR-ELKY-----DVESLLKVSEEE---LNEIQGVGE 529

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHK 665
           ++A+A V ++ + +++     LL E+  +I +         E    V TG+++    R +
Sbjct: 530 VLAKAFVGYFADAKHVENFRRLLNEL--TIPKETVTKQQIFEGVNFVITGSVKHFANRGE 587

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +E +  LG  V+  ++ KT+ +I  D  +  SK +KA +LG+ I++EE FL L+ Q  T
Sbjct: 588 VKELIESLGGKVTGSVTSKTNYLINNDVTSTSSKNKKANELGIPIISEETFLELVNQEET 647


>gi|34764322|ref|ZP_00145154.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27885904|gb|EAA23248.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 455

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/445 (31%), Positives = 233/445 (52%), Gaps = 37/445 (8%)

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +E+RGEV +   +F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L
Sbjct: 1   MEIRGEVVLPLANFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFL 60

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            +  ++  K   E ++ +  +G           T   I    +  +  R  LPY+ DGLV
Sbjct: 61  VEADKLGLKSHSESIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLV 120

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVDE +L  ++G  +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V +
Sbjct: 121 IKVDEINLWNEIGYTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVEL 180

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  A+LHN   I+            +DIR+GDRV +++A E+IP+VV  I  +R  
Sbjct: 181 SGSKVKRASLHNISEIQ-----------RKDIRIGDRVFIEKAAEIIPQVVKSIKEDRTG 229

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           + +    P  CP+C  ++ R+      + +   +C     C A+    +++FVSRDA NI
Sbjct: 230 NEKVIEEPINCPVCNHKLERE------EGLVDIKCVNE-ECPAKVQGEIEYFVSRDALNI 282

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GLG + ++ F    D  + I+   DI+ L+  ++     +ENI   G  S+ NL +SI 
Sbjct: 283 MGLGSKIVEKFI---DLGY-IKTVVDIYDLKNHREA----LENIDKMGKRSIENLLNSIE 334

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + +N   ++ I++LGI  +G   ++ LAK             NI    N  +  L  +  
Sbjct: 335 ESKNRDYDKVIYALGIAEIGKVTSKILAKAS----------KNIDKLMNMTFEELTSIEG 384

Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL 628
           +G I A  I+ F++  +N   +E+L
Sbjct: 385 IGXIAANEIIAFFKKEKNQKIIESL 409


>gi|291460667|ref|ZP_06600057.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291416626|gb|EFE90345.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 664

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 194/708 (27%), Positives = 337/708 (47%), Gaps = 91/708 (12%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87
            YYQ    I+ + EYD L          + +L   E   G      P  ++G E+   L 
Sbjct: 19  AYYQDGDEIMSNLEYDKL----------YDELQGLERETGIVLSASPTERVGYELLSELP 68

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           KV H  P LSL+K  + E L +++          D   +   L  K+DG  I + YE G+
Sbjct: 69  KVRHLSPMLSLDKTKSPEALAEWLG---------DREGL---LSWKLDGLTIVLNYEGGE 116

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V    RG+G  GE V+  +R    +P  +  +   ++  RGE  I  +DF  +ND ++ 
Sbjct: 117 LVRGVTRGNGEIGELVTQNVRVFDNVPTRIPFSGSLVL--RGEALIRYSDFERINDGILD 174

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL-----GKTSEI-FAKGQYEMLQ 259
              + Y NPRN  +G +R+L+P  IT  R++      L     G  S + F   +    +
Sbjct: 175 AEAR-YKNPRNLCAGSVRQLDP-GITKERHVKLLAFSLVSAKEGDGSPVDFQNSRRRQFE 232

Query: 260 KMRCLGFPVNNG--VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            +R  GF V     VR       + ++   +K   +  P D  GLV  +D+ +  + LG 
Sbjct: 233 FLREQGFSVVEYRLVRGGEVLAAVKAFSERVKD--NDFPSD--GLVLLLDDIAYGESLGR 288

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+ PR  ++ K+ +++A T L +++    RTG++ PVA  +PV + G  ++ A+LHN  
Sbjct: 289 TAKFPRNALAFKWRDEEAETVLREVEWSPSRTGLINPVAIFDPVELEGTTVSRASLHNLS 348

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           + + L            + +GDRV V +A  +IP+     ++E    +   S PS CP C
Sbjct: 349 FCEEL-----------SLGLGDRVSVYKANMIIPQ-----LSENFTKSGTLSPPSRCPAC 392

Query: 438 --QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
             ++ V +D   K  K +          C A+++++   FVSRDA NIEGL +  L+ F 
Sbjct: 393 GEETEVRKD---KGAKFLYCKNPD----CPAKRIKKFSLFVSRDALNIEGLSEMTLEKFI 445

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                 F I+   D++ L+R ++    +I ++ GFG+ S   L +++ K R+  L   I+
Sbjct: 446 GH---GF-IKSYRDLYHLERHRE----EILSMEGFGERSYERLMEAVEKSRDTLLYHLIY 497

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI  +G   AR L ++      F QE++ I     ++   L+ V  +G+++A+ +  +
Sbjct: 498 GLGIDGIGLANARLLCRH------FHQELSLIRGAEKEE---LLEVDGIGEVLAEKLYAY 548

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLG 674
           + + + +  +  LL E+        +     +  K +V TG L   + R + +E + + G
Sbjct: 549 FHSEKQLSELHELLPELRIGREEEREEEGGALRGKTIVITGNLTHFENRKELEEEILRAG 608

Query: 675 AVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              S  +S+KT  ++  D+     K +KA++LG+ I+ EE+FL +L +
Sbjct: 609 GKCSGSVSKKTSYLVNNDSSSQSGKNKKAKELGIPIVTEEEFLKILGE 656


>gi|154503603|ref|ZP_02040663.1| hypothetical protein RUMGNA_01427 [Ruminococcus gnavus ATCC 29149]
 gi|260589901|ref|ZP_05855814.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|153795703|gb|EDN78123.1| hypothetical protein RUMGNA_01427 [Ruminococcus gnavus ATCC 29149]
 gi|260539708|gb|EEX20277.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|291547890|emb|CBL20998.1| DNA ligase, NAD-dependent [Ruminococcus sp. SR1/5]
          Length = 671

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 203/725 (28%), Positives = 322/725 (44%), Gaps = 86/725 (11%)

Query: 20  ELSSLE---QEISYHD---DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED--- 70
           ELS++E   Q + Y +   + YY  + P I D+EYD +          F +L   E    
Sbjct: 6   ELSNVEKIKQLVDYLNLQRNAYYNENSPNISDAEYDRI----------FDELVELEKQTG 55

Query: 71  ---PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               N P   +G      L KV H +P LSL+K   ++DL  F  +            + 
Sbjct: 56  FILSNSPTQTVGYTPISELPKVKHPVPLLSLDKTKQVQDLISFAGK----------QPVL 105

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           F L  K+DG    + YE G  V A+ RGDG  GE ++  I A   +P  LS+     + +
Sbjct: 106 FML--KLDGLTTKLVYENGTLVEASTRGDGEIGELITHNIPAYVDVP--LSIPYKGRLVI 161

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF----VHG 242
            GE +I  +DF  L + +     +PY N RN ASG +R L+P +   R L+F     + G
Sbjct: 162 VGESFIPTHDFERLKETLRDGKGEPYKNGRNLASGSVRSLDPANCAGRCLHFMPFNVLEG 221

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGF-PVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           L  +  +F   +   +  +   GF P          T   +  Y   +  +       ID
Sbjct: 222 L-DSPFLFPDSRAMKISSLFDYGFQPCPYIAANHPLTSELVNQYIERLTDLAGKKHLPID 280

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V   D     K  G      +  ++ KF ++   T L +I+    R G + PV   +P
Sbjct: 281 GIVMIFDSLDYSKNCGRTGHHYKDGLAFKFEDETYETTLRNIEWTPTRFGEIAPVGVFDP 340

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V I G  ++ ATLHN  +IK L+           +  G R+ V +   +IP + + +   
Sbjct: 341 VEIDGCSVSRATLHNLTFIKELE-----------LVPGCRISVSKRNMIIPHIEENLERG 389

Query: 421 RHPDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            + DA     P  CP C S+  +       G+L+    C     C +Q  +R  HFV + 
Sbjct: 390 HYVDA----VPPVCPCCGSQTRIYQRKGNDGRLIETVHCDNP-NCDSQIRKRFTHFVGKK 444

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NIEGL +  L+ F         ++   DI+ L   Q+    +I  + GFG  S   L+
Sbjct: 445 AMNIEGLSETTLEKFLT----LGYLQTFPDIYHLNEHQE----EILQLEGFGKKSFERLW 496

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSL-AKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +SI   RN +  RF+ S+ I  VG   +R L   ++ S Q F        A  + D+  L
Sbjct: 497 NSITSSRNTTFVRFLVSMDIPMVGRTKSRILDTVFHGSLQEFFDA-----ASGDYDFTQL 551

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK-----KLV 653
                 GD + Q I +++ +  N+     L KE+   I    K +++ ++        +V
Sbjct: 552 DDF---GDTLNQNIHDWFSDENNLILWHELQKEL---IFEERKEMNTMMKENVFTGCTIV 605

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG L    R +    + +LGA   + +++KTD +I G+  GSKL KAQ LG+KI++E++
Sbjct: 606 ATGKLAHFTRDEINSKILELGAKAGSSVTKKTDYLICGEKAGSKLAKAQSLGIKILSEDE 665

Query: 714 FLFLL 718
           FL ++
Sbjct: 666 FLEMI 670


>gi|284047072|ref|YP_003397412.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
 gi|283951293|gb|ADB54037.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
          Length = 670

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 198/729 (27%), Positives = 337/729 (46%), Gaps = 92/729 (12%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQAR    +L  +I +H   Y +   P ++D++YDAL+    A+  A P++   ++P   
Sbjct: 7   EQAR----ALAAQIDHHRGLYAR-GAPALVDADYDALEDELRALLAASPEVVLDDNP--- 58

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           L++      +    + HS P LSLEK    E L  F  R              F + PK+
Sbjct: 59  LDRPWAPELVPGQTIRHSRPMLSLEKATTAEQLDAFCARF---------PGQAFRVTPKL 109

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I I Y+ G+  Y A RGDG  GE V+   R +  +   L+L     +EVRGE  + 
Sbjct: 110 DGISIAIVYQDGELEYVATRGDGRDGERVTDKARLV-VLGLPLTLGAAGRVEVRGEAVML 168

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT---RYLNFFVHGLGKTSEIFA 251
            + + A ND   A   +P  NPR+AA+G     +P       R L FF   L + +E+  
Sbjct: 169 DSIWRAYND---AHPDRPLTNPRSAAAGTFVVKSPEACVAEGRTLRFFAFDLDE-AEV-- 222

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               ++ +++  LGF V + V  A       +   ++ + R    + IDG V ++     
Sbjct: 223 -SDGDVSERLVALGFEVPD-VLPAADAEQARAAIEQVAARRGEYDFGIDGAVVRLASRRA 280

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            +  G  + +PR  ++ K+  ++ +T L  +   +G+ G + P A+++PV +GG  +T A
Sbjct: 281 FEAAGATSSAPRGALAWKYPAEERTTVLRAVTWPVGKIGRVVPRAQVDPVFVGGTTVTFA 340

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN   ++            RDIR+GD V + R G+VIP +   +V +R  D      P
Sbjct: 341 SLHNPRLVR-----------ERDIRIGDTVRIMRRGDVIPFIAGSVVEQRTGDEVEIELP 389

Query: 432 SFCPICQSR-VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           + CP C +  VVR     TG+ +        L C AQ + RL H+ SR A ++EG+G   
Sbjct: 390 THCPSCGTELVVR----GTGEELWCEN----LQCPAQAVRRLIHWSSRHASDMEGVGNTW 441

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRN 547
           ++    +ED    +  P+D + L          +E ++G+   G+VS   +  SI++ R 
Sbjct: 442 IEKL--AEDGV--LERPSDFYAL---------TVEQLVGYERMGEVSANAMVASIDRSRG 488

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           + L R +  L I      +A+      L    F + I  I+    ++ L  IR   +G  
Sbjct: 489 VGLRRALIGLAIPMASEGVAKR-----LCLAGF-ERIEEIVERTAEE-LEAIRD--IGPK 539

Query: 608 IAQAIVEFYQNP---RNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTL 658
           +A ++V ++  P     +CA+ A    V   +   ++ +       + ++   +V TG  
Sbjct: 540 VAASMVAYFARPEVQEELCALRA--AGVDLDVRDEDRPIEVADAAETPLKGATVVVTGAF 597

Query: 659 ------QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711
                  K+ R      + Q GA   + +S  T ++I G N G +K +KA +LGV+++++
Sbjct: 598 ADPDSGAKVARPAVVRLLEQAGATSVSSVSATTTMLIAGSNVGAAKTDKAARLGVQVVDQ 657

Query: 712 EQFLFLLQQ 720
           EQ    L +
Sbjct: 658 EQAWDWLAE 666


>gi|197301582|ref|ZP_03166655.1| hypothetical protein RUMLAC_00308 [Ruminococcus lactaris ATCC
           29176]
 gi|197299312|gb|EDY33839.1| hypothetical protein RUMLAC_00308 [Ruminococcus lactaris ATCC
           29176]
          Length = 662

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 196/664 (29%), Positives = 328/664 (49%), Gaps = 81/664 (12%)

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P   +G E+   L K  H  P LSL+K   +E L++F+        KK        + 
Sbjct: 65  NSPTVNVGYEVVSGLPKERHERPMLSLDKTKEVERLKEFLG------TKKA------MIS 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVR 188
            K+DG  I + Y+ G+ V A  RG+G  GE ++   +    +P    L+IP   E++ +R
Sbjct: 113 WKLDGLTIVLTYQGGELVKAVTRGNGIEGEVITNNAKVFQNVP----LHIPYQGELV-LR 167

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246
           GE  IS  DF A+N+++  V  K Y NPRN  SG +R+LN  +IT  R + FF   L + 
Sbjct: 168 GEAVISYKDFEAINEKIEDVDAK-YKNPRNLCSGSVRQLN-NEITAKRNVKFFAFTLVRA 225

Query: 247 SEI-FAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSI-RSTLPYDIDGLV 303
            E+ F   +   +Q ++  GF V  +    A T    V+++   K+I ++ +P D  GLV
Sbjct: 226 EEVDFHNSRMYQMQWLKEQGFDVVEHHPVTAETIEEEVAWF--AKAIGKNEIPSD--GLV 281

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
              D+ +  + LG  A+ PR   + K+A++   T LL+I+    RTG++ PVA  EPV +
Sbjct: 282 LVYDDIAYGQSLGTTAKFPRDSFAFKWADEIRETTLLEIEWSPSRTGLINPVAVFEPVEL 341

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A++HN   ++ L           ++ VGD + V +A  +IP++ + +      
Sbjct: 342 EGTTVSRASVHNISIMEEL-----------ELGVGDTIQVYKANMIIPQIAENLTRSGVK 390

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D      P+ CP+C       +  +T  L     CT    C A+ ++    FVSRDA NI
Sbjct: 391 D-----IPTVCPVCGGTTKISMENETKTLF----CTNP-ECQAKHVKAFSLFVSRDAMNI 440

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGL +  L+ F         ++   D+F L R ++    +I+++ GFG+ S   L  +I 
Sbjct: 441 EGLSEATLEKFILHG----YVKDFTDLFHLDRYEE----EIKSMDGFGEKSYQKLLRNIE 492

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R  +L R I+SLGI ++G+  A+ + K +      A+E              L+ +  
Sbjct: 493 NARKTTLARLIYSLGIPNIGSANAKVICKAFGDDPKRAEEATE---------EELVEIQG 543

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK----KLVFTGTLQ 659
           +G I+A+  VE++ +P++      LL EV       +K V +E   K      V TG+++
Sbjct: 544 IGGIMAKTYVEYFADPKHREIYRRLLDEV-----ELQKEVVTEDSQKFSGINFVITGSVE 598

Query: 660 KI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
               R + +  + + G  V+  ++ KT  +I  D  +  SK +KA++LGV I++EE  + 
Sbjct: 599 HFANRAEVKAEIEKRGGKVTGSVTSKTGYLINNDVNSTSSKNKKARELGVPIISEETLIG 658

Query: 717 LLQQ 720
           +L+Q
Sbjct: 659 MLEQ 662


>gi|325261872|ref|ZP_08128610.1| DNA ligase, NAD-dependent [Clostridium sp. D5]
 gi|324033326|gb|EGB94603.1| DNA ligase, NAD-dependent [Clostridium sp. D5]
          Length = 651

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 201/699 (28%), Positives = 333/699 (47%), Gaps = 85/699 (12%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAF-PDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
           Y Q    I+ + EYD L      +       LA S     P   +G E+   L K  H  
Sbjct: 22  YEQEDTEIMSNYEYDKLYDELLGLEQELGTTLASS-----PTINVGYEVLSELPKERHER 76

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL+K  ++E L+ F+          D  ++   +  K+DG  I + Y     V A  
Sbjct: 77  PMLSLDKTKDVEQLKTFL---------GDKEAV---ISWKLDGLTIVLTYRDKTLVKAVT 124

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGEVYISKNDFLALNDEMIAVGR 210
           RG+G  GE ++   +    +P    ++IP   E+I +RGE  I   DF  +N E+  V  
Sbjct: 125 RGNGEVGEVITNNAKVFKNLP----MHIPFDGELI-LRGEAVIGYKDFEKINAEIEDVDA 179

Query: 211 KPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFP 267
           K Y NPRN  SG +R+LN  +IT  R + FF   L   + + F   + E    +   GF 
Sbjct: 180 K-YKNPRNLCSGSVRQLN-NEITAKRNVRFFAFSLVSAAGVDFKNSRTEQFDWLEKQGFE 237

Query: 268 V-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           V  + +  A+T    V ++   +   +  P D  GLV   D+ +  + LG  A+ PR   
Sbjct: 238 VVEHHLVTADTIEEQVEWF-AGEIAENDFPSD--GLVLVYDDIAYGQSLGSTAKFPRDSY 294

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           + K+A++   T LL+I+    RTG++ PVA  EPV + G  ++ A++HN   ++ L    
Sbjct: 295 AFKWADEIRDTTLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNLSIMEEL---- 350

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSRVVRD 444
                  ++ VGD + V +A  +IP++ + +      D      PS CP+C   +R+  +
Sbjct: 351 -------ELGVGDEIQVYKANMIIPQIAENLTRSGVKD-----IPSACPVCGHDTRISME 398

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
            + KT        CT    C A+Q++    FVSRDA N+EGL +  L+ F       F I
Sbjct: 399 NDTKT------LYCTNP-QCQAKQIKSFALFVSRDALNMEGLSEATLEKFIAR---GF-I 447

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           +   DIF L R ++    +I+ + GFG+ S  NL +S+   RN +L + ++SLGI ++G 
Sbjct: 448 KDYIDIFHLDRYEE----EIKTMDGFGEKSYVNLINSVENSRNTTLPKLVYSLGIANIGL 503

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP--RNI 622
             A+ + +   +  N  Q++             L  +  VG +IA+  V+++ +P  R +
Sbjct: 504 ANAKMICR---ALGNDPQKLTEATVE------ELSEISGVGGVIAKTFVDYFADPGHREL 554

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAIL 681
            A      E+     + E  +    EN   V TG+++    R++ +E +   G  V+  +
Sbjct: 555 FARLLEEVEIPVEEVQAEAQI---FENMNFVITGSVEHFANRNEVKELIESRGGKVTGSV 611

Query: 682 SRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + KT+ +I  D  +  SK +KA+ L + I++EE+FL +L
Sbjct: 612 TSKTNYLINNDVQSASSKNKKARDLEIPIISEEEFLKML 650


>gi|323695090|ref|ZP_08109232.1| DNA ligase [Clostridium symbiosum WAL-14673]
 gi|323500845|gb|EGB16765.1| DNA ligase [Clostridium symbiosum WAL-14673]
          Length = 663

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 204/717 (28%), Positives = 338/717 (47%), Gaps = 82/717 (11%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +IE     +  L   +S     YYQ S+ I+ + EYD L          + +LA  E   
Sbjct: 7   AIENKTARIRELVDTLSAAGRAYYQESREIMSNFEYDRL----------YDELAELEKET 56

Query: 73  G------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           G      P   +G E+  SL K  H  P LSL K  ++E+L++++          D   +
Sbjct: 57  GIVFAGSPTQNVGYEVMSSLPKERHEKPMLSLNKTKSVEELQEWL---------GDQKGL 107

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              L  K+DG  I + YE G    A  RG G  GE ++   +    +P  L++     + 
Sbjct: 108 ---LSWKMDGLTIVLTYEGGTLAKAVTRGSGEIGEVITNNAKVFANVP--LNIGFTGQLI 162

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244
           +RGE  I  +DF  +N ++  V  K Y NPRN  SG +R+LN  +IT  R + F+   L 
Sbjct: 163 LRGEAVIRYSDFEKINAQIEDVDAK-YKNPRNLCSGSVRQLN-NEITARRNVRFYAFSLV 220

Query: 245 KTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGL 302
               + F   + +  + +   GF V +      +T  G V  +++  S  + +P D  GL
Sbjct: 221 MADGVDFGNSRKKQFEWLCSQGFEVVDYKEVTRDTLPGKVQEFSDAVS-GNDIPSD--GL 277

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V   D+    + LG  A+ PR  I+ K+ ++   T L  I+    RTG++ PVA  EPV 
Sbjct: 278 VLLYDDIEYGQSLGRTAKFPRDSIAFKWMDEIQETTLSYIEWSASRTGLINPVAVFEPVE 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A++HN   ++ L           ++ VGD++ V +A  +IP++ + +     
Sbjct: 338 LEGTTVSRASVHNLSIMEAL-----------ELGVGDKITVYKANMIIPQIAENLTKSGV 386

Query: 423 PDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            D      P  CP+C +   +R +N      V +  CT    C A++++    F SRDA 
Sbjct: 387 KD-----IPKHCPVCGADTEIRQIND-----VKSLYCTNP-DCQAKKIKSFTLFASRDAL 435

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI GL +  L+   K     F I   ADIF L R +Q    +I  + GFG  S  NL  S
Sbjct: 436 NIGGLSEATLE---KMIGVGF-IHEYADIFHLDRYEQ----EIVTMDGFGQKSYDNLIAS 487

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + K    +L R ++SLGI  +G   A+ L + +          N+  A    +   L+ V
Sbjct: 488 VKKASETTLPRVVYSLGISGIGLANAKMLCRRFK---------NDFAAMRKAEKEELVAV 538

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +GD++A A ++F+ + +N   V+ LL E++      E+      +    V TG+++  
Sbjct: 539 DGIGDVLADAWIDFFSSEKNNEIVDHLLDELTIEETAEEEEAEGVFDGISFVITGSVEHF 598

Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFL 715
           + R + QE + Q G  V+  ++ KT+ +I  D     SK +KA++LG+ I++E++F+
Sbjct: 599 KNRKEIQEIIEQKGGKVTGSVTAKTNYLINNDTASSSSKNKKAKELGIPIISEQEFI 655


>gi|167769644|ref|ZP_02441697.1| hypothetical protein ANACOL_00978 [Anaerotruncus colihominis DSM
           17241]
 gi|167668005|gb|EDS12135.1| hypothetical protein ANACOL_00978 [Anaerotruncus colihominis DSM
           17241]
          Length = 674

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 194/718 (27%), Positives = 325/718 (45%), Gaps = 83/718 (11%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNK 77
           L   ++ + D YY  + P + D  YD L          F +L   E   G      P   
Sbjct: 12  LNDRLNRYRDEYYNRNAPSVSDEVYDRL----------FDELKELEQETGIQMANSPTQT 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G      L K  H IP LSL+K  +  DL  F+           +  +   L  K+DG 
Sbjct: 62  VGYPAVSRLEKTRHEIPLLSLDKTKSSMDLLNFMG----------EQQVMLML--KLDGL 109

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G+ + AA RGDG  GE ++   RAI  IP  ++    E + V GE +I  +D
Sbjct: 110 TVKLTYENGELLEAATRGDGDEGEIITHNTRAISGIPSHITYK--ERLVVTGEGFIRPSD 167

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  L   +     KPY N RN A+G +R ++  T   R L F   G+ +      + + +
Sbjct: 168 FEELKTSLQDSSGKPYKNGRNLAAGSIRLMDAKTCQERRLVFMPFGVLEGFPHLTR-KSD 226

Query: 257 MLQKMRCLGF-PVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            L+++R LGF P    V +Q  T   + +   +++   +     IDG+V   ++ +  + 
Sbjct: 227 KLRELRALGFQPCKYLVTKQKLTLENVEAGIYQLRQYATDKDIPIDGIVVSFNDIAYAQS 286

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
            G      +  +++KF +    + L  I+   GRTG + PVA   PV I G  ++ A+LH
Sbjct: 287 CGRTGHHYKDGLAYKFEDDLHESLLQYIEWTPGRTGEIAPVAVFTPVEIDGCEVSRASLH 346

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF---- 430
           N  +I+ L+           +  G+R+LV +   +IP V      E + D   FS     
Sbjct: 347 NLSFIEDLE-----------LMAGNRILVSKRNMIIPHV------EENLDRGGFSMADTI 389

Query: 431 PSFCPIC-QSRVVRDLNPKTGK----LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           P  CP C Q   + + + K  K    ++    C     C  ++L++  HFVS+ A  IEG
Sbjct: 390 PHVCPCCGQPTRIHESSGKGEKSEDRIIKTLYCDNP-DCETRRLKKFVHFVSQKAMEIEG 448

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           L +  L+ F       F I    DI+ L R +     +I  + GFG+ S   L+D+I + 
Sbjct: 449 LSEATLEKFIGQ---GF-IHSYLDIYRLDRYR----AEIVRMDGFGEKSWQRLWDAIQQS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAK-YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RN + ER++ S+ I  +G   ++ L + ++     F   +     +   D+  L   P  
Sbjct: 501 RNTTFERYLISMDIPMIGNTASKVLGRVFHYDLDEFRDAV-----YGGYDFRQL---PDF 552

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSE--IENKKLVFTGTLQ 659
           G+ +   I +++    N C  E L   ++   P++  H ++   +     K +V TG ++
Sbjct: 553 GETLHNNIHDWFCVEDNFCIWEELQTMMNIQKPAVAEHSEDRVQDNPFVGKTIVVTGKVE 612

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
              R    + +  LGA   + +S+KTD ++ G+N GSKL KA+ LGV +++  +F  +
Sbjct: 613 PYTRDGINDLIESLGAHAGSSVSKKTDYLVCGENAGSKLSKARDLGVTVLSPAEFFSM 670


>gi|323485704|ref|ZP_08091041.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum
           WAL-14163]
 gi|323400967|gb|EGA93328.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum
           WAL-14163]
          Length = 663

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 204/717 (28%), Positives = 337/717 (47%), Gaps = 82/717 (11%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +IE     +  L   +S     YYQ S+ I+ + EYD L          + +LA  E   
Sbjct: 7   AIENKTARIRELVDTLSAAGRAYYQESREIMSNFEYDRL----------YDELAELEKET 56

Query: 73  G------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           G      P   +G E+  SL K  H  P LSL K  ++E+L++++          D   +
Sbjct: 57  GIVFAGSPTQNVGYEVMSSLPKERHEKPMLSLNKTKSVEELQEWL---------GDQKGL 107

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              L  K+DG  I + YE G    A  RG G  GE ++   +    +P  L++     + 
Sbjct: 108 ---LSWKMDGLTIVLTYEGGTLAKAVTRGSGEIGEVITNNAKVFANVP--LNIGFTGQLI 162

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244
           +RGE  I  +DF  +N ++  V  K Y NPRN  SG +R+LN  +IT  R + F+   L 
Sbjct: 163 LRGEAVIRYSDFEKINAQIEDVDAK-YKNPRNLCSGSVRQLN-NEITARRNVRFYAFSLV 220

Query: 245 KTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGL 302
               + F   + +  + +   GF V +      +T  G V  +++  S  + +P D  GL
Sbjct: 221 MADGVDFGNSRKKQFEWLCSQGFEVVDYKEVTRDTLPGKVQEFSDAVS-GNDIPSD--GL 277

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V   D+    + LG  A+ PR  I+ K+ ++   T L  I+    RTG++ PVA  EPV 
Sbjct: 278 VLLYDDIEYGQSLGRTAKFPRDSIAFKWMDEIQETTLSYIEWSASRTGLINPVAVFEPVE 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A++HN   ++ L           ++ VGD++ V +A  +IP++ + +     
Sbjct: 338 LEGTTVSRASVHNLSIMEAL-----------ELGVGDKITVYKANMIIPQIAENLTKSGV 386

Query: 423 PDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            D      P  CP+C +   +R +N      V +  CT    C A++++    F SRDA 
Sbjct: 387 KD-----IPKHCPVCGADTEIRQIND-----VKSLYCTNP-DCQAKKIKSFTLFASRDAL 435

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI GL +  L+   K     F I   ADIF L R +Q    +I  + GFG  S  NL  S
Sbjct: 436 NIGGLSEATLE---KMIGVGF-IHEYADIFHLDRYEQ----EIVTMDGFGQKSYDNLIAS 487

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + K    +L R ++SLGI  +G   A+ L + +          N+  A        L+ V
Sbjct: 488 VKKASETTLPRVVYSLGISGIGLANAKMLCRRFK---------NDFAAMRKAKKEELVAV 538

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +GD++A A ++F+ + +N   V+ LL E++      E+      +    V TG+++  
Sbjct: 539 DGIGDVLADAWIDFFSSEKNNEIVDHLLDELTIEETAEEEEAEGVFDGISFVITGSVEHF 598

Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFL 715
           + R + QE + Q G  V+  ++ KT+ +I  D     SK +KA++LG+ I++E++F+
Sbjct: 599 KNRKEIQEIIEQKGGKVTGSVTAKTNYLINNDTASSSSKNKKAKELGIPIISEQEFI 655


>gi|226325717|ref|ZP_03801235.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758]
 gi|225205841|gb|EEG88195.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758]
          Length = 687

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 202/732 (27%), Positives = 322/732 (43%), Gaps = 112/732 (15%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           K + +L ++++ +   YY    P++ D+EYD L          F +L   E+       N
Sbjct: 30  KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRL----------FDELKELEEQTGFILSN 79

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G      L KVTH IP LSLEK        K I+ +  F + ++   + F L  
Sbjct: 80  SPTQTVGYYPVSELAKVTHPIPLLSLEKT-------KLISELLDFMKGQE---VLFML-- 127

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGE 190
           K+DG    + YE G+ + A+ RGDG  GED++  I A   +P    L IP  E + + GE
Sbjct: 128 KLDGLTTKLIYEDGRLIQASTRGDGEVGEDITHNIPAFLNVP----LTIPHKERLVITGE 183

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI----TRYLNFFVHGLGKT 246
            +I  NDF  L D +     KPY N RN ASG +R L+P +      R+L F V   G  
Sbjct: 184 SFIPTNDFERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLE-GME 242

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYY-----NEMKSIRSTLPYDIDG 301
              F   +   L+ +  LGF        + T  G+   Y      E+ S  + L   IDG
Sbjct: 243 DVPFPDSRACKLEGLTHLGFGYCPFFSISGT--GLSKEYAEKFIQELVSTAANLHLPIDG 300

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V   D  S  K  G+     +  +++KF +    T L +I+    R G + PV   + V
Sbjct: 301 IVMIFDSLSYSKSCGKTGHHYKDGLAYKFEDDTYETFLREIEWTPTRFGEIAPVGIFDTV 360

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            I G  ++ A+LHN  +IK L           ++  G R+LV +   +IP + D +   R
Sbjct: 361 EIDGCDVSRASLHNLTFIKNL-----------ELVPGCRILVSKRNMIIPHIEDNLDRGR 409

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKT--GKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           + D      P  CP C S+  R  + KT  G+ V    C     C +Q   R  HF S+ 
Sbjct: 410 YTDIT----PPVCPCCGSK-TRTYSRKTSDGRTVETLHCDNP-QCDSQITRRFVHFASKK 463

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NIEGL +  L+ F         +    DI+ L+  ++     I  + G+G+ S   L+
Sbjct: 464 AMNIEGLSEATLEKFLN----LGYLHSFQDIYHLEEHRE----DIVALDGYGEKSFDRLW 515

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY-----------LSYQNFAQ--EINN 586
           +SIN  R  S  R++ S+ I  +G   +R L   +           +   +F Q  +   
Sbjct: 516 ESINASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQAAVGDYDFTQLEDFGE 575

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
           I+ HN   W +            +A ++ ++N +N    E           R E+ + ++
Sbjct: 576 ILNHNIHSWFA-----------DEANLDLWKNLQNEFTFEQ----------RKEETIMTK 614

Query: 647 IENK----KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
            ENK     +V TG L+   R    + + +LGA   + +++KTD +I G+ P +  +K +
Sbjct: 615 -ENKFTGCTIVATGKLEHFTRDGINDKILELGAKPGSSVTKKTDYLICGEKPAANWQKPR 673

Query: 703 QLGVKIMNEEQF 714
            L  + + +  F
Sbjct: 674 ALVFQFLQKLNF 685


>gi|295110374|emb|CBL24327.1| DNA ligase, NAD-dependent [Ruminococcus obeum A2-162]
          Length = 624

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 197/689 (28%), Positives = 329/689 (47%), Gaps = 86/689 (12%)

Query: 47  EYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLFKVTHSIPTLSLEK 100
           EYDAL          + +L ++E   G      P  ++G E   +L K TH  P LSL+K
Sbjct: 5   EYDAL----------YNELEQTEKITGIVLADSPTVRVGYEAVDALPKETHDSPMLSLDK 54

Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160
               E LR F+             S    L  K+DG  I + YE G+   A  RG+G  G
Sbjct: 55  TKEKEVLRGFV------------GSHKTLLSWKMDGLTIVLTYENGELQKAVTRGNGIVG 102

Query: 161 EDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
           E ++   R    IP  L +     + +RGE  I+ +DF  +N+ +  V  K Y NPRN  
Sbjct: 103 EVITNNARVFRNIP--LKIAYQGRLVLRGEAIITYSDFERINNSIEDVDAK-YKNPRNLC 159

Query: 221 SGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM-LQKMRCLGFPV-NNGVRQAN 276
           SG +R+LN   IT  R + F    L    ++      E  ++ +R  GF V    V  + 
Sbjct: 160 SGSVRQLN-NQITAERNVRFLAFALVSAQDVDMHNSREFQMEWLRTQGFEVVEYRVVTSE 218

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
                + Y+ E  +   T  +  DGLV   D+ +  + LG  A+ PR   + K+A++   
Sbjct: 219 NLDEAMDYFAERIT---TNDFPSDGLVALYDDIAYGESLGSTAKFPRNAFAFKWADEVRE 275

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           T L +I+    RTG++ PVA  +PV + G  ++ A++HN   +K L            + 
Sbjct: 276 TTLREIEWSPSRTGLINPVAVFDPVELEGTTVSRASVHNVSIVKEL-----------KLG 324

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSRVVRDLNPKTGKLVA 454
           +GD + V +A  +IP++      E    +     P+ CP+C  ++RV+R+ +      V 
Sbjct: 325 IGDTIQVYKANMIIPQIA-----ENLTQSGKLEIPNTCPVCGQEARVIREND------VE 373

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514
           A  C     C A++++    FVSRDA NI+GL +  L+ F       F I    DIF ++
Sbjct: 374 ALYCMNP-DCVAKKIKAFTLFVSRDAMNIDGLSEATLEKFIAK---GF-IHNFGDIFEIE 428

Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
           + +     +I  + GFG+ S  NL  SI K +  +L + I+SLGI ++G   A+ + +Y 
Sbjct: 429 KYRD----EIVMMDGFGEKSFDNLISSIEKAKKTTLAKVIYSLGISNIGLSNAKVICRY- 483

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
                F  +++ I +   ++   +  +  +G +IA ++ +++    N   V+ LL  +  
Sbjct: 484 -----FDDDLDKIRSAKEEE---ISAIDGIGPVIAGSLTKYFAKSENNQKVDHLLGYL-- 533

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692
            I + EK+ +        V TG+L+    R +A+  +  LG  V+  ++ KT+ +I  D 
Sbjct: 534 HIVKEEKSDNQIFAGMNFVITGSLEHFSNRGEAKNLIESLGGKVTGSVTGKTNYLINNDV 593

Query: 693 -NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  SK +KA++LG+ I++EE FL L ++
Sbjct: 594 TSNSSKNKKARELGIPILSEEDFLKLTEE 622


>gi|227875717|ref|ZP_03993845.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243]
 gi|269976734|ref|ZP_06183710.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1]
 gi|227843659|gb|EEJ53840.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243]
 gi|269935099|gb|EEZ91657.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1]
          Length = 917

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 158/554 (28%), Positives = 268/554 (48%), Gaps = 88/554 (15%)

Query: 1   MKKRQLIPIEALSIEQARKEL-SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           M+K++ IP +   I+   +EL + +E   + + D   ++    + D++YDAL  R   + 
Sbjct: 1   MRKKREIPPQ---IQNEHQELVAQIEAARADYYDNPDEHGVTRLSDADYDALFVRLQLLE 57

Query: 60  HAFPDLARSEDPNG----------------------------PLNKIGGEMNLSLFKVTH 91
            ++P L   + P                              P N +           TH
Sbjct: 58  GSYPALVTPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENAVAVATTEGFPPHTH 117

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
           +    S++ +++  ++  +  R+ +  + K       + E K+DG  +++ Y  G+ +  
Sbjct: 118 AKRMQSIDDVFSTAEVDAWWERVEKGLEGK---PFTVSAEVKVDGLAMSLTYVDGQLMTG 174

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDE------ 204
           A RGDG  GEDV+A +R I T+P+ L    IP ++E+RGEVY+   DF  +N E      
Sbjct: 175 ATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMNAEREANNA 234

Query: 205 -------------MIAVGRKP-YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
                        +  + + P +ANPRNAA+G L++ +  +   R L F  HGLG   + 
Sbjct: 235 AWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAHGLGAV-QG 293

Query: 250 FAKG------QYEMLQKMRCLGFPV------NNGVRQAN--TFHGIVSYYNEMKSIRSTL 295
           +  G      Q +  +++   G P       + G+R A   T   + +    M   R   
Sbjct: 294 WPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAMTEHRHDF 353

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            + IDG+V KVD  + +  LG  AR+PRW  ++KF  ++  TRLL I++Q+GRTG +TP 
Sbjct: 354 SHQIDGVVLKVDNLAARVLLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGRTGRVTPF 413

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A +E V + G+ ++ ATLHN         + +V R  +D+R GD V++++AG++IP+V+ 
Sbjct: 414 AVMERVLVDGSYVSRATLHN---------AKEVAR--KDVRPGDTVVLRKAGDIIPEVLG 462

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            +++ R      +  P  CP C +R+ ++   K G +    RC     C AQ  ERL H 
Sbjct: 463 PVLSLRPGGLPEWVMPEMCPSCGTRLGQE---KEGDI--DLRCPNQAGCPAQITERLIHV 517

Query: 476 VSRDAFNIEGLGKQ 489
            +R A +IEGLG++
Sbjct: 518 GARGALDIEGLGEE 531



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 115/321 (35%), Gaps = 90/321 (28%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGD 532
           FV R+     G   QQ+ FF+    P       A  F L          +   LG     
Sbjct: 607 FVWREVPGTAGRDWQQVRFFWAK--PKRVTAAEAATFGL----------VAGELGEPVAG 654

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA----------Q 582
            +V   ++ +   R+    R + +L IRH+G   AR++A+ + +    A          +
Sbjct: 655 KTVETFFNQLAAARSKETWRVLVALSIRHLGPVAARAVARRFPTLAAVAAADVEGLSQVE 714

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDI----------------------------------- 607
            +  +IA +  DW    RVP   +I                                   
Sbjct: 715 GVGAVIAASVVDWF---RVPWHQEIVLAWTQAGLGLGLRDFGVGLASASRGASPGVDSGG 771

Query: 608 -------------IAQAIVEFYQ---NPRNICAVEALLKEVSPSI-----GRHEKNVSSE 646
                        ++   VE  Q    P N   +EA   +  P+      G   +N SS 
Sbjct: 772 IQPDLFSDFGTGHVSGGDVESGQAPHEPANPGGIEASWGQNFPAAKGSAPGMSAQNQSSA 831

Query: 647 IENKK-------LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
            E  +       LV TG +    R  AQ  V   G   +  +S+KT +++ G   GSKL 
Sbjct: 832 WEEPEQTLAGLTLVITGNIPGFTRESAQLAVEDRGGKATGSVSKKTSVVVAGTGAGSKLA 891

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           KA+ LG+ ++  E+F  LL++
Sbjct: 892 KAEALGIPVIPAEEFPALLER 912


>gi|307700359|ref|ZP_07637399.1| DNA ligase (NAD+) [Mobiluncus mulieris FB024-16]
 gi|307614570|gb|EFN93799.1| DNA ligase (NAD+) [Mobiluncus mulieris FB024-16]
          Length = 917

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 158/554 (28%), Positives = 268/554 (48%), Gaps = 88/554 (15%)

Query: 1   MKKRQLIPIEALSIEQARKEL-SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           M+K++ IP +   I+   +EL + +E   + + D   ++    + D++YDAL  R   + 
Sbjct: 1   MRKKREIPPQ---IQNEHQELVAQIEAARADYYDNPDEHGVTRLSDADYDALFVRLQLLE 57

Query: 60  HAFPDLARSEDPNG----------------------------PLNKIGGEMNLSLFKVTH 91
            ++P L   + P                              P N +           TH
Sbjct: 58  GSYPALVTPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENAVAVATTEGFPPHTH 117

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
           +    S++ +++  ++  +  R+ +  + K       + E K+DG  +++ Y  G+ +  
Sbjct: 118 AKRMQSIDDVFSTAEVDAWWERVEKGLEGK---PFTVSAEVKVDGLAMSLTYVDGQLMTG 174

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDE------ 204
           A RGDG  GEDV+A +R I T+P+ L    IP ++E+RGEVY+   DF  +N E      
Sbjct: 175 ATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMNAEREANNA 234

Query: 205 -------------MIAVGRKP-YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
                        +  + + P +ANPRNAA+G L++ +  +   R L F  HGLG   + 
Sbjct: 235 AWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAHGLGAV-QG 293

Query: 250 FAKG------QYEMLQKMRCLGFPV------NNGVRQAN--TFHGIVSYYNEMKSIRSTL 295
           +  G      Q +  +++   G P       + G+R A   T   + +    M   R   
Sbjct: 294 WPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAMTEHRHDF 353

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            + IDG+V KVD  + +  LG  AR+PRW  ++KF  ++  TRLL I++Q+GRTG +TP 
Sbjct: 354 SHQIDGVVLKVDNLAARALLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGRTGRVTPF 413

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A +E V + G+ ++ ATLHN         + +V R  +D+R GD V++++AG++IP+V+ 
Sbjct: 414 AVMERVLVDGSYVSRATLHN---------AKEVAR--KDVRPGDTVVLRKAGDIIPEVLG 462

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            +++ R      +  P  CP C +R+ ++   K G +    RC     C AQ  ERL H 
Sbjct: 463 PVLSLRPRGLPEWVMPEMCPSCGTRLGQE---KEGDI--DLRCPNQAGCPAQITERLIHV 517

Query: 476 VSRDAFNIEGLGKQ 489
            +R A +IEGLG++
Sbjct: 518 GARGALDIEGLGEE 531



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 116/321 (36%), Gaps = 90/321 (28%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGD 532
           FV R+     G   QQ+ FF+    P       A  F L          +   LG     
Sbjct: 607 FVWREVPGTAGRDWQQVRFFWAK--PKRVTAAEAATFGL----------VAGELGEPVAG 654

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY--------QNFAQ-- 582
            +V   ++ +   R+    R + +L IRH+G   AR++A+ + +         ++ +Q  
Sbjct: 655 KTVETFFNQLAAARSKETWRVLVALSIRHLGPVAARAVARKFPTLAAVAAADVEDLSQVE 714

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDI----------------------------------- 607
            +  +IA +  DW    RVP   +I                                   
Sbjct: 715 GVGTVIAASVVDWF---RVPWHQEIVLAWTQAGLGLGLRDFGVGLASASRGASPGVDSGG 771

Query: 608 -------------IAQAIVEFYQ---NPRNICAVEALLKEVSPSI-----GRHEKNVSSE 646
                        ++   VE  Q    P N   +EA   +  P+      G   +N S  
Sbjct: 772 IQPDLFSDFGTGHVSGGDVESGQAPHEPANPGGIEASWGQNFPAAKGSAPGMSAQNQSGA 831

Query: 647 IENKK-------LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
            E  +       LV TG +    R  AQ  V   G   +  +S+KT +++ G   GSKL 
Sbjct: 832 WEEPEQTLAGLTLVITGNIPGFTRESAQLAVEDRGGKATGSVSKKTSVVVAGTGSGSKLA 891

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           KA+ LG+ ++  E+F  LL++
Sbjct: 892 KAEALGIPVIPAEEFPALLER 912


>gi|289759140|ref|ZP_06518518.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium
           tuberculosis T85]
 gi|289714704|gb|EFD78716.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium
           tuberculosis T85]
          Length = 449

 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 147/472 (31%), Positives = 236/472 (50%), Gaps = 36/472 (7%)

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306
           FA+     +  +R  G P        N   G+   + Y+ E    R  + ++IDG+V KV
Sbjct: 3   FARHPASGIPGVRAWGLPGFRTHHPGNRPAGVRERIDYWGEH---RHEVDHEIDGVVVKV 59

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           DE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+
Sbjct: 60  DEVALQRRLGFTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGS 119

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN   IK         R G  + +GD V++++AG+VIP+V+  +V  R    +
Sbjct: 120 TVGQATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSER 168

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P+ CP C S +  +   K G   A  RC     C  Q  ER+ H  SR+  +IE L
Sbjct: 169 EFIMPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVL 223

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +      +++     I    ++F L  R    T       G    +   L  +++K +
Sbjct: 224 GYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAK 279

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L R + +L IRHVG   AR+LA  + S       ++ I A + D    L  V  VG 
Sbjct: 280 AAPLWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGP 329

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            IA A+ E++    +   V+         +   +++V   +    +V TG+L    R  A
Sbjct: 330 TIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDA 389

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL
Sbjct: 390 KEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 441


>gi|325989607|ref|YP_004249306.1| DNA ligase [Mycoplasma suis KI3806]
 gi|323574692|emb|CBZ40348.1| DNA ligase [Mycoplasma suis]
          Length = 590

 Score =  216 bits (551), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 167/558 (29%), Positives = 275/558 (49%), Gaps = 55/558 (9%)

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD---DNSIFFTLEPKIDGTMITIRY 143
           FK  H  P LSL   +N E+L  F   I +  ++ +    N+ FF +EPKIDG  I+++Y
Sbjct: 61  FKKEHLEPMLSLNNAFNQEELCLFFDSIEKTLKQNNRPYKNNEFF-VEPKIDGMSISLQY 119

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVYISKNDFLAL 201
           +KG+ + A  RGDG  GED+   I  I +IP+ + L  + PE I VRGE++I K+DF  +
Sbjct: 120 KKGELIEALSRGDGIKGEDLFEPILRINSIPKKIKLPESFPEEILVRGEIFILKSDFKKI 179

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTSEIFAKGQYEM 257
            +E      K ++N RN  +G LR  +   I+ + L+F  + +    K  E   K Q +M
Sbjct: 180 QEESSEKRIKTFSNARNFVAGTLRLKDFEQISDKKLSFIAYRIIPVSKEQEFPVKTQEQM 239

Query: 258 LQKMRCLGFPVNNGVRQANTFHG-------IVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           ++ +  LGF        + T  G        + +  +   ++  +    DGLV K++   
Sbjct: 240 IRTLEELGF-TTPPKEYSKTIIGNRANLDIFLDFIGQFGEVKDEIDIPNDGLVIKLNSLE 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             + +G  A+ P+W I++K+      T+LL I++++GR+G +T + +LEP+ + G+ I  
Sbjct: 299 DHEIIGSTAKFPKWAIAYKYPSLVKKTKLLKIELKVGRSGRITYIGKLEPIELKGSQIEC 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +LHN D IK L           D+R G  V V ++GEVIP+   II  E + +  P+  
Sbjct: 359 VSLHNFDNIKKL-----------DLREGSIVEVCKSGEVIPQ---IIFAESNSELPPYEL 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +V       G+      C     C  Q++ ++ +F S+ A NIEGL +  
Sbjct: 405 PTECPSCSSTLV------FGEGDKLQYCRNK-DCWEQKISKIVYFCSQQAVNIEGLSRGI 457

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   K  +  F   I  DI++L+ ++Q   +  +  L   +     L  SI + +  S 
Sbjct: 458 IE---KLVNKGFLTNI-LDIYSLKEKEQEIYSSKD--LKIKEKLFKKLVTSIEESKKASP 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ +  LGI H+G E A+ L K + S +             N D  S + VP VG     
Sbjct: 512 QKILIGLGIDHIGGEAAKLLLKKFSSLEELF----------NSDLESKLNVPKVGPKSGY 561

Query: 611 AIVEFYQNPRNICAVEAL 628
           A+  + ++  N   VE L
Sbjct: 562 ALENWLKDEDNKKLVEGL 579


>gi|306818992|ref|ZP_07452709.1| NAD-dependent DNA ligase LigA [Mobiluncus mulieris ATCC 35239]
 gi|304648185|gb|EFM45493.1| NAD-dependent DNA ligase LigA [Mobiluncus mulieris ATCC 35239]
          Length = 917

 Score =  216 bits (551), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 158/554 (28%), Positives = 268/554 (48%), Gaps = 88/554 (15%)

Query: 1   MKKRQLIPIEALSIEQARKEL-SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           M+K++ IP +   I+   +EL + +E   + + D   ++    + D++YDAL  R   + 
Sbjct: 1   MRKKREIPPQ---IQNEHQELVAQIEAARADYYDNPDEHGVTRLSDADYDALFVRLQLLE 57

Query: 60  HAFPDLARSEDPNG----------------------------PLNKIGGEMNLSLFKVTH 91
            ++P L   + P                              P N +           TH
Sbjct: 58  GSYPALVTPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENTVAVATTEGFPPHTH 117

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
           +    S++ +++  ++  +  R+ +  + K       + E K+DG  +++ Y  G+ +  
Sbjct: 118 AKRMQSIDDVFSTAEVDAWWERVEKGLEGK---PFTVSAEVKVDGLAMSLTYVDGQLMTG 174

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDE------ 204
           A RGDG  GEDV+A +R I T+P+ L    IP ++E+RGEVY+   DF  +N E      
Sbjct: 175 ATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMNAEREANNA 234

Query: 205 -------------MIAVGRKP-YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
                        +  + + P +ANPRNAA+G L++ +  +   R L F  HGLG   + 
Sbjct: 235 AWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAHGLGAV-QG 293

Query: 250 FAKG------QYEMLQKMRCLGFPV------NNGVRQAN--TFHGIVSYYNEMKSIRSTL 295
           +  G      Q +  +++   G P       + G+R A   T   + +    M   R   
Sbjct: 294 WPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAMTEHRHDF 353

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            + IDG+V KVD  + +  LG  AR+PRW  ++KF  ++  TRLL I++Q+GRTG +TP 
Sbjct: 354 SHQIDGVVLKVDNLAARVLLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGRTGRVTPF 413

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A +E V + G+ ++ ATLHN         + +V R  +D+R GD V++++AG++IP+V+ 
Sbjct: 414 AVMERVLVDGSYVSRATLHN---------AKEVAR--KDVRPGDTVVLRKAGDIIPEVLG 462

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            +++ R      +  P  CP C +R+ ++   K G +    RC     C AQ  ERL H 
Sbjct: 463 PVLSLRPRGLPEWVMPEMCPSCGTRLGQE---KEGDI--DLRCPNQAGCPAQITERLIHV 517

Query: 476 VSRDAFNIEGLGKQ 489
            +R A +IEGLG++
Sbjct: 518 GARGALDIEGLGEE 531



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 116/321 (36%), Gaps = 90/321 (28%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGD 532
           FV R+     G   QQ+ FF+    P       A  F L          +   LG     
Sbjct: 607 FVWREVPGTAGRDWQQVRFFWAK--PKRVTAAEAATFGL----------VAGELGEPVAG 654

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY--------QNFAQ-- 582
            +V   ++ +   R+    R + +L IRH+G   AR++A+ + +         ++ +Q  
Sbjct: 655 KTVETFFNQLAAARSKETWRVLVALSIRHLGPVAARAVARKFPTLAAVAAADVEDLSQVE 714

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDI----------------------------------- 607
            +  +IA +  DW    RVP   +I                                   
Sbjct: 715 GVGTVIAASVVDWF---RVPWHQEIVLAWTQAGLGLGSRDFGVGLASASRGASPGVDSGG 771

Query: 608 -------------IAQAIVEFYQ---NPRNICAVEALLKEVSPSI-----GRHEKNVSSE 646
                        ++   VE  Q    P N   +EA   +  P+      G   +N S  
Sbjct: 772 IQPDLFSDFGTGHVSGGGVESGQAPHEPANPGGIEASWGQNFPAAKGSAPGMSAQNQSGA 831

Query: 647 IENKK-------LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
            E  +       LV TG +    R  AQ  V   G   +  +S+KT +++ G   GSKL 
Sbjct: 832 WEEPEQTLAGLTLVITGIIPGFTRESAQLAVEDRGGKATGSVSKKTSVVVAGTGAGSKLA 891

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           KA+ LG+ ++  E+F  LL++
Sbjct: 892 KAEALGIPVIPAEEFPALLER 912


>gi|323485875|ref|ZP_08091210.1| hypothetical protein HMPREF9474_02961 [Clostridium symbiosum
           WAL-14163]
 gi|323400863|gb|EGA93226.1| hypothetical protein HMPREF9474_02961 [Clostridium symbiosum
           WAL-14163]
          Length = 674

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 192/718 (26%), Positives = 325/718 (45%), Gaps = 83/718 (11%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNK 77
           L   ++ + D YY  + P + D  YD L          F +L   E   G      P   
Sbjct: 12  LNDRLNRYRDEYYNRNAPSVSDEVYDRL----------FDELKELEQETGIQMANSPTQT 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G      L K  H IP LSL+K  +  DL  F+           +  +   L  K+DG 
Sbjct: 62  VGYPAVSRLEKTRHEIPLLSLDKTKSSMDLLNFMG----------EQQVMLML--KLDGL 109

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G+ + AA RGDG  GE ++   RAI  IP  ++    E + V GE +I  +D
Sbjct: 110 TVKLTYENGELLEAATRGDGDEGEIITHNTRAISGIPSHITYK--ERLVVTGEGFIRPSD 167

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  L   +     KPY N RN A+G +R ++      R L F   G+ +      + + +
Sbjct: 168 FEELKTSLQDSSGKPYKNGRNLAAGSIRLMDAKICQERRLVFMPFGVLEGFPHLTR-KSD 226

Query: 257 MLQKMRCLGF-PVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            L+++R LGF P    V +Q  T   + +   +++   +     IDG+V   ++ +  + 
Sbjct: 227 KLRELRALGFQPCKYLVTKQKLTLENVEAGIYQLRQYATDKDIPIDGIVVSFNDIAYAQS 286

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
            G      +  +++KF +    + L  I+   GRTG + PVA   PV I G  ++ A+LH
Sbjct: 287 CGRTGHHYKDGLAYKFEDDLHESLLQYIEWTPGRTGEIAPVAVFTPVEIDGCEVSRASLH 346

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF---- 430
           N  +I+ L+           +  G+R+LV +   +IP V      E + D   FS     
Sbjct: 347 NLSFIEDLE-----------LMAGNRILVSKRNMIIPHV------EENLDRGGFSMVDTI 389

Query: 431 PSFCPIC-QSRVVRDLNPK----TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           P  CP C Q   + + + K      +++    C     C  ++L++  HFVS+ A +IEG
Sbjct: 390 PRVCPCCGQPTRIHESSGKGENGEDRIIKTLYCDNP-DCETRRLKKFVHFVSQKAMDIEG 448

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           L +  L+ F       F I    DI+ L R +     +I  + GFG+ S   L+D+I + 
Sbjct: 449 LSEAALEKFIGQ---GF-IHSYLDIYRLDRYR----AEIVRMDGFGEKSWQRLWDAIQQS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAK-YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RN + ER++ S+ I  +G   ++ L + ++     F   +     +   D+  L   P  
Sbjct: 501 RNTTFERYLISMDIPMIGNTASKVLGRVFHYDLDEFRDAV-----YGGYDFRQL---PDF 552

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSE--IENKKLVFTGTLQ 659
           G+ +   I +++    N C  E L   ++   P++  H ++   +     K +V TG ++
Sbjct: 553 GETLHNNIHDWFCVEDNFCIWEELQTMMNIQKPAVVEHSEDREQDNPFVGKTIVVTGKVE 612

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
              R    + +  LGA   + +S+KTD ++ G+N GSKL KA+ LGV +++  +F  +
Sbjct: 613 PYTRDGINDLIESLGAHAGSSVSKKTDYLVCGENAGSKLSKARDLGVTVLSPAEFFSM 670


>gi|322379217|ref|ZP_08053608.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS1]
 gi|321148357|gb|EFX42866.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS1]
          Length = 680

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/425 (32%), Positives = 223/425 (52%), Gaps = 33/425 (7%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           + +YH   YY  + P+I D+ YD L R+       +P   ++  P  P  ++GG +  +L
Sbjct: 17  QYAYH---YYVLASPLISDAIYDQLYRQVLDYETKYP---QNILPYSPTQRVGGVVLETL 70

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIY----------RFWQKKDDNSIF-FTLEPKID 135
            K TH +   SLE ++N+E+L+ +I RI           R  Q     S   FT  PK+D
Sbjct: 71  PKHTHKVRMWSLENVFNLEELQVWINRIVESEHALKTKGRISQTYPSASFTRFTCSPKLD 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE G+   A++RG+G  GE V+   + I +IP ++    P  IE+RGEV + +
Sbjct: 131 GASLNLYYENGQLQSASMRGNGLEGELVTHNAKTIHSIPLIIPYTKP--IEIRGEVVLQR 188

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +AN RNA  G LR+L+      R L F+  GLG   E +   +
Sbjct: 189 EDFKALNAERLKQNLPLFANARNATVGSLRQLDSKIAAQRKLTFYPWGLGLVEEKYTSLK 248

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             M Q ++  GF ++       +   I   +    + RS + +D DG+V  +D+  LQ  
Sbjct: 249 QSM-QMVKDWGF-LSLEFVLCESLEAIEETFKLFHTRRSEVTFDADGMVVMLDDLYLQSI 306

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SPR+  ++KF   +  T+LLD+  Q+GR+G +TPVA LEP+ + GA I+ ATL 
Sbjct: 307 LGFTIKSPRFGFAYKFPATEKHTKLLDVLNQVGRSGAITPVALLEPIKLEGACISKATLD 366

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            + + + D V++ R+G+VIPK++  + + R+   +P + P+ C
Sbjct: 367 NYTQIQ-----------QQGLMINDTVVIVRSGDVIPKIIKPLKHLRNGTQKPITPPTHC 415

Query: 435 PICQS 439
           P CQS
Sbjct: 416 PACQS 420


>gi|288870885|ref|ZP_06115627.2| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479]
 gi|288865557|gb|EFC97855.1| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479]
          Length = 645

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 201/703 (28%), Positives = 331/703 (47%), Gaps = 87/703 (12%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87
            YYQ S+ I+ + EYD L          + +LA  E   G      P   +G E+   L 
Sbjct: 14  TYYQESREIMSNYEYDKL----------YDELAELEKETGVVLSKSPTQSVGYEVLSELP 63

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H  P LSL+K  +  DL++++          D   I   L  K+DG  + + Y  G 
Sbjct: 64  KERHESPMLSLDKTKSTADLQEWL---------GDQTGI---LSWKLDGLTVVLTYSGGT 111

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
              A  RG+G  GE +++  R    +P  +S    E++ +RGE  I  ++F  +N+ +  
Sbjct: 112 LKKAVTRGNGEIGEVITSNARVFANVPVTISFQ-GELV-LRGEAVIRYSEFNRINEAIDD 169

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCL 264
           V  + Y NPRN  SG +R+LN + IT  R +NF    L     + F   + E  + ++  
Sbjct: 170 VDAR-YKNPRNLCSGSVRQLN-SQITAERNVNFEAFALVTAEGVDFNNSRKEQFEWLKRQ 227

Query: 265 GFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDI--DGLVYKVDEFSLQKQLGERARS 321
           GF V       A+T    V  + E  S      YDI  DGLV  +D+ +  + LG  A+ 
Sbjct: 228 GFDVVEYRTVTADTLPEAVEAFAEAVS-----GYDIPSDGLVLLLDDIAYGESLGRTAKF 282

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PR  I+ K+A++   T+L  I+    RTG++ PVA  +PV + G  ++ A++HN   ++ 
Sbjct: 283 PRNAIAFKWADEIRETKLQYIEWSPSRTGLINPVAVFDPVELEGTTVSRASVHNLSIMES 342

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
           L A G+          GD + V +A  +IP++ D +       +     P  CP+C  R 
Sbjct: 343 L-ALGE----------GDAITVYKANMIIPQIADNLTR-----SGKIQIPEKCPVCGGRT 386

Query: 442 -VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
            VR         V +  CT    C A++++    FVSRDA NI+GL +  L+ F      
Sbjct: 387 EVRQAGD-----VRSLYCTNP-DCQAKRIKSFSLFVSRDALNIDGLSEATLEKFI----G 436

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
           A  I+  ADIF L R ++T    I  + GFG  S  NL  +     + +L R ++ LGI 
Sbjct: 437 AGFIKEFADIFHLDRYEET----ITQMEGFGQKSYDNLIRATEAASHTTLARMVYGLGIS 492

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
            +G   A+ L +       F  + + +     ++   L+ V  +G ++A A + ++ + +
Sbjct: 493 GIGLANAKMLCR------KFKFDFDRMRHATAEE---LVEVDGIGAVLADAWIRYFADEK 543

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSA 679
           N   V+ LL E++      E    +  E    V TG+++    R++ +E +   G   + 
Sbjct: 544 NQETVDHLLSELTFEQ-EEESAEEAVFEGMTFVITGSVEHFANRNELKEAIEARGGKATG 602

Query: 680 ILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            ++ KT  +I  D  +  SK +KA+ LGV I++EE+F+ +L +
Sbjct: 603 SVTSKTTYLINNDVTSNSSKNKKAKDLGVPIISEEEFIKMLGE 645


>gi|325973164|ref|YP_004250228.1| DNA ligase [Mycoplasma suis str. Illinois]
 gi|323651766|gb|ADX97848.1| DNA ligase [Mycoplasma suis str. Illinois]
          Length = 590

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 167/558 (29%), Positives = 274/558 (49%), Gaps = 55/558 (9%)

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD---DNSIFFTLEPKIDGTMITIRY 143
           FK  H  P LSL   +N E+L  F   I +  ++ +    N+ FF +EPKIDG  I+++Y
Sbjct: 61  FKKEHLEPMLSLNNAFNQEELCLFFDSIEKTLKQNNRPYKNNEFF-VEPKIDGMSISLQY 119

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVYISKNDFLAL 201
           +KG+ + A  RGDG  GED+   I  I +IP+ + L  + PE I VRGE++I K+DF  +
Sbjct: 120 KKGELIEALSRGDGIKGEDLFEPILRINSIPKKIKLPESFPEEILVRGEIFILKSDFKKI 179

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTSEIFAKGQYEM 257
            +E      K ++N RN  +G LR  +   I+ + L+F  + +    K  E   K Q +M
Sbjct: 180 QEESSEKRIKTFSNARNFVAGTLRLKDFEQISDKKLSFIAYRIIPVSKEQEFPVKTQEQM 239

Query: 258 LQKMRCLGFPVNNGVRQANTFHG-------IVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           ++ +  LGF        + T  G        + +  +   ++  +    DGLV K++   
Sbjct: 240 IRTLEELGF-TTPPKEYSKTIIGNRANLDIFLDFIGQFGEVKDEIDIPNDGLVIKLNSLE 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             + +G  A+ P+W I++K+      T+LL I++++GR+G +T + +LEP+ + G+ I  
Sbjct: 299 DHEIIGSTAKFPKWAIAYKYPSLVKKTKLLKIELKVGRSGRITYIGKLEPIELKGSQIEC 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +LHN D IK L           D+R G  V V ++GEVIP+   II  E + +  P+  
Sbjct: 359 VSLHNFDNIKKL-----------DLREGSIVEVCKSGEVIPQ---IIFAESNSELPPYEL 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +V       G       C     C  Q++ ++ +F S+ A NIEGL +  
Sbjct: 405 PTECPSCSSTLV------FGGGDKLQYCRNK-DCWEQKISKIVYFCSQQAVNIEGLSRGI 457

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   K  +  F   I  DI++L+ ++Q   +  +  L   +     L  SI + +  S 
Sbjct: 458 IE---KLVNKGFLTNI-LDIYSLKEKEQEIYSSKD--LKIKEKLFKKLVTSIEESKKASP 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ +  LGI H+G E A+ L K + S +             N D  S + VP VG     
Sbjct: 512 QKILIGLGIDHIGGEAAKLLLKKFSSLEELF----------NSDLESKLNVPKVGPKSGY 561

Query: 611 AIVEFYQNPRNICAVEAL 628
           A+  + ++  N   VE L
Sbjct: 562 ALENWLKDEDNKKLVEGL 579


>gi|257439785|ref|ZP_05615540.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
 gi|257197805|gb|EEU96089.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
          Length = 449

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 141/465 (30%), Positives = 234/465 (50%), Gaps = 41/465 (8%)

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L  ++ LG PV+      +     ++   ++   R+ L +D+DG V KV+ F+ ++ L
Sbjct: 21  ESLDYLKSLGLPVSPRYHIVHDIEDAIAEIEQIGQNRAALDFDMDGAVIKVNNFAQRELL 80

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   + PRW I+ K+  +   T L  I++ +GRTG+LTP A  +PV + G  ++ ATLHN
Sbjct: 81  GSTNKFPRWAIAFKYPPEVKETTLRSIEVGVGRTGVLTPTACFDPVFLAGTTVSRATLHN 140

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED+I+ L            + +GD + V++AG++IP+V+ +  +E  PDAQP+  P FCP
Sbjct: 141 EDFIRQL-----------GLCIGDTIQVRKAGDIIPEVIGVTRHE--PDAQPYQMPEFCP 187

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C +  V   +       AA RC     C AQ L  + HF SRDA +I+GLG        
Sbjct: 188 SCGAPAVHLEDE------AALRCVNP-ECPAQALRNIIHFASRDAMDIDGLGTMVATQLV 240

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
              D    +   AD++ L   Q  +  K      F + S  NL  +I   +  +L++ +F
Sbjct: 241 ---DKGL-VHSAADLYDLTIEQLLTLEK------FKEKSANNLLQAIEASKQNNLDKLMF 290

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           + GIR++G + A  LA+++ S Q   +     I            +   G ++AQ++ EF
Sbjct: 291 AFGIRNIGDKAAALLAEHFGSLQAIREATEEQIG----------EIDGFGGVMAQSVTEF 340

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +        V   L +   ++    +    ++  K LV TGTL+ + R +A+  + + G 
Sbjct: 341 FAKDGTTDLVHR-LADAGVNMQWKGEPKGDKLAGKTLVVTGTLETLSRSEAEALIVKNGG 399

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             S  +S+KT  ++ G   GSKL KAQ LGV ++ E +FL ++ +
Sbjct: 400 KASGSVSKKTAYVVAGAAAGSKLTKAQALGVPVLTEVEFLAMIAE 444


>gi|331086070|ref|ZP_08335153.1| DNA ligase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406993|gb|EGG86498.1| DNA ligase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 653

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 204/713 (28%), Positives = 341/713 (47%), Gaps = 71/713 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ ++ +  L Q ++     YYQ +K I+ + EYD   R  D +     +L  +   N 
Sbjct: 1   MEQKKQRMQELVQLLNQAGKAYYQDAKEIMSNHEYD---RLYDELLVLEQELGITM-ANS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K    + L++F+       +KK        +  K
Sbjct: 57  PTVNVGYEVLSELPKERHEKPMLSLDKTKETDRLKEFVG------EKKA------VISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + YE G+   A  RG+G  GE ++   +    +P  ++    E+I +RGE  I
Sbjct: 105 LDGLTIVLTYENGELKKAVTRGNGEVGEVITNNAKVFQNVPLRIAYR-GELI-LRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-F 250
              DF  +N+E+  V  K Y NPRN  SG +R+LN  +IT  R + F+   L K   + F
Sbjct: 163 GYRDFEKINEEIEDVDAK-YKNPRNLCSGSVRQLN-NEITARRNVQFYAFSLVKADGVDF 220

Query: 251 AKGQYEMLQKMRCLGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
              +   L+ ++  GF V        +T    V ++ E     + +P D  GLV   D+ 
Sbjct: 221 QNSRNIQLEWLKEQGFDVVEHYEVTKDTLEERVRFFAEHIE-ENDIPSD--GLVLTYDDI 277

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +  + LG  A+ PR   + K+A++   T L +I+    RTG++ PVA  +PV + G  ++
Sbjct: 278 AYGQSLGSTAKFPRDSFAFKWADEIRETTLREIEWSPSRTGLINPVAIFDPVELEGTTVS 337

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A++HN   ++ L           ++ +GD + V +A  +IP++ +   N       P  
Sbjct: 338 RASVHNLSIMEEL-----------ELGIGDTIQVYKANMIIPQIAE---NLTRSGMDP-- 381

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C           T  L     CT    C A+ ++    FVSRDA NI+GL + 
Sbjct: 382 VPECCPACGGETEIRQVSDTKTLY----CTNP-ECGAKHIKAFSLFVSRDALNIDGLSEA 436

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+ F       F I   +DIF L+R  +    +I ++ GFG+ S  NL DSI K R  +
Sbjct: 437 TLEKFITR---GF-IHHFSDIFHLERHGE----EIRSMEGFGEKSYKNLQDSIEKARTTT 488

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L + I+ LGI ++G   A+ + +       F  ++  ++     D  +L  +  VGD+IA
Sbjct: 489 LPKLIYGLGIANIGLSNAKMICRA------FDYDVEKMLQA---DVEALNEIQGVGDVIA 539

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QRHKAQ 667
           +A V+++    +      LL+EV   I   E     +I      V TG+++    R++ +
Sbjct: 540 RAFVDYFAVEDHREEFFRLLEEV--KIPEEETTQEEQIFAGMNFVITGSVEHFANRNEVK 597

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +   G  V+  ++ KT+ +I  D  +  SK +KA++LG+ I++E+ FL ++
Sbjct: 598 EVIESKGGKVTGSVTSKTNWLINNDVESTSSKNKKARELGIPIISEDTFLKMI 650


>gi|225389801|ref|ZP_03759525.1| hypothetical protein CLOSTASPAR_03549 [Clostridium asparagiforme
           DSM 15981]
 gi|225044136|gb|EEG54382.1| hypothetical protein CLOSTASPAR_03549 [Clostridium asparagiforme
           DSM 15981]
          Length = 673

 Score =  213 bits (543), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 189/701 (26%), Positives = 315/701 (44%), Gaps = 76/701 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS---EDPNGPLNKIGGEMNLSLFKVTH 91
           YY  + P I D+ YD L            DL R    +  N P + +G      L K  H
Sbjct: 23  YYNLNAPSISDAVYDRL-------FEELQDLERQTGIQMANSPTSTVGYPAISKLEKTNH 75

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
            IP LSL+K  NI ++ +F+           ++ + F L  K+DG  I + YE G+ + A
Sbjct: 76  PIPLLSLDKEKNIVEVCRFM----------GEHQVMFML--KLDGLTIKLTYEGGELLEA 123

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211
           A RGDG  GE V+   RAI  IP    +   + + + GE +I  +DF  L   ++    +
Sbjct: 124 ATRGDGEVGEIVTHNTRAIGGIP--AHIRYEDRLVITGEAFIRPSDFEQLKASLVDNNGE 181

Query: 212 PYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP--- 267
            Y N RN A+G +R L+  T + R L F    + +  E   + + E L+++  LGF    
Sbjct: 182 TYKNGRNLAAGSVRLLDAKTCMERRLMFMPFTVLEGFENLPR-KSERLKELSALGFTPCK 240

Query: 268 ---VNNGVRQANTFHGI--VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
                  + QA    GI  +  Y   K I       IDG+V   ++ +  K  G      
Sbjct: 241 YLVTKRTLTQAEAEDGIKQLQQYARDKDI------PIDGIVVTYNDVAFAKSCGRTGHHY 294

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           +  ++ KF +    T+L  I+   GRTG + PVA   PV I G  ++ A+LHN  +I+ L
Sbjct: 295 KDGLAFKFEDDLFETKLQMIEWTPGRTGEIAPVAVFAPVEIDGCEVSRASLHNLSFIEDL 354

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSR 440
           +           +  G+R+LV +   +IP V D +  +R       ++P  CP C   +R
Sbjct: 355 E-----------LMPGNRILVSKRNLIIPHVEDNL--DRGGFVLESAYPHRCPCCGEPTR 401

Query: 441 V--VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           +   R  N    +            C  ++L++  HFV + A NIEGL +  L+      
Sbjct: 402 IHETRGRNENGEERTIKTLFCDNAGCETRKLKQFVHFVGKKAMNIEGLSEATLEKLIGRG 461

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I    DI+ L + +     ++  + GFG+ S   L+ +I + RN + ER++ ++ 
Sbjct: 462 ----WIHSYLDIYRLDQHKD----ELVRMDGFGERSWQRLWSAIQQSRNTTFERYVIAMD 513

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G   +  L + +  + N  +  + + A  +       ++P  GD +   I E++  
Sbjct: 514 IPMIGNTASGVLCQVF--HGNLDEFRDAVYAGYD-----FRQLPDFGDTLHNNIHEWFSK 566

Query: 619 PRNICAVEAL---LKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
             N C  E L   +K   P     E N   +    K +V TG ++   R +    +  LG
Sbjct: 567 EENFCIWEELQMMMKIQKPVQPVAENNTQDNPFAGKTIVVTGKVEPYTRDEMNSLIASLG 626

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           A+  + ++RKT  ++ G+  GSKL KA++LG+ ++  ++F 
Sbjct: 627 AIAGSSVTRKTHYLVCGEKAGSKLSKARELGIPVLEPQEFF 667


>gi|225572684|ref|ZP_03781439.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039920|gb|EEG50166.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM
           10507]
          Length = 622

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 183/655 (27%), Positives = 320/655 (48%), Gaps = 68/655 (10%)

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++G +    L K TH  P LSL+K  ++E+LR+FI          D  S+   L 
Sbjct: 26  NSPTVQVGYQALDELPKETHETPMLSLDKTKDMEELREFI---------GDHRSL---LS 73

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I + YE+GK   A  RG+G  GE ++   R    IP  L++     + +RGE 
Sbjct: 74  WKLDGLTIVLTYEEGKLSKAVTRGNGIVGEVITNNARVFQNIP--LTIPYKGKLVLRGEA 131

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL-NPTDITRYLNFFVHGLGKTSEI- 249
            I+ +DF  +N  +  +  + Y NPRN  SG +R+L N     R + F    L    ++ 
Sbjct: 132 VITYSDFERINASIAQIEAR-YKNPRNLCSGSVRQLSNEITAKRNVQFLAFALVSAQDVD 190

Query: 250 FAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           F   +   ++ ++  GF V    +  +      V Y++E    R+  P D  GLV   D+
Sbjct: 191 FRNSRDFQMRWLKSQGFDVVEYRIVTSENLEESVQYFSEAVE-RNDFPSD--GLVAIYDD 247

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +    LG  ++ PR   + K+A++   T L +++    RTG++ PVA  EPV + G  +
Sbjct: 248 IAYGDSLGSTSKFPRNSYAFKWADETKETVLKEMEWSPSRTGLINPVAIFEPVELEGTTV 307

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A++HN   +K L            + +GD + V +A  +IP++ + +    +      
Sbjct: 308 SRASVHNISILKEL-----------QLGIGDHIQVYKANMIIPQIAENLTRSGN-----L 351

Query: 429 SFPSFCPIC--QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           + P  CP+C  ++RV+++        V +  C     C A++++    FVSRDA N+EGL
Sbjct: 352 TIPDACPVCGQEARVIKE------NEVESLYCMNP-QCQAKRIKAFTLFVSRDAMNVEGL 404

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            +  L+         F I    DIF L+R ++    +I  + G G+ S  NL  SI K R
Sbjct: 405 SEATLEKLIAR---GF-IHDFGDIFELERYRE----QITEMEGLGEKSFDNLVSSIEKAR 456

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L + I+SLGI ++G   A+ + ++      F  ++  +   + D+   +  +  +G 
Sbjct: 457 DTTLPKMIYSLGIPNIGLANAKVICRH------FDYDLERLKNASEDE---VSGIDGIGP 507

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHK 665
           +IA+ +V F +N  N   +E L+  +   + +  + +   +E    V TG+++    R+ 
Sbjct: 508 VIAKNLVRFLENEENQKKLEHLVSHL--RLEKPAETLKKSLEGLNFVITGSVEHFPNRNA 565

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLL 718
            +E + + G  V+  ++ KT  +I  D     SK +KA+ LGV I++EE+FL +L
Sbjct: 566 VKEAIEEQGGKVTGTVTSKTSYLINNDTASSSSKNKKAKALGVPIISEEEFLEML 620


>gi|317502015|ref|ZP_07960199.1| DNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896695|gb|EFV18782.1| DNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 644

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 191/696 (27%), Positives = 328/696 (47%), Gaps = 74/696 (10%)

Query: 34  CYYQYSKPIILDSEYDAL-KRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
            Y Q +  I+ + EYD L              LA S     P   +G E+   L K  H 
Sbjct: 14  AYEQENTEIMSNFEYDRLYDELLSLEKELETTLASS-----PTVNVGYEVLSELPKERHE 68

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
            P LSL+K  ++E LR+F+          D  ++   +  K+DG  I + YE G    A 
Sbjct: 69  TPMLSLDKTKDVERLREFL---------GDQQAV---ISWKMDGLTIVLTYENGVLKKAV 116

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            RG+G  GE V+   +    +P  LS+     + +RGE  IS  DF  +N+E I      
Sbjct: 117 TRGNGEIGEVVTNNAKVFRNVP--LSIPFKGELVLRGEAVISYKDFEKINEE-IGDADAK 173

Query: 213 YANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPV- 268
           Y NPRN  SG +R+LN  ++T  R + F+   L K   + F   +   L+ ++  GF V 
Sbjct: 174 YKNPRNLCSGSVRQLN-NEVTAKRNVRFYAFTLVKADNVDFENSRAYQLKWLQEQGFDVV 232

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRST-LPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
            + +   +T    V+++ E   IR   +P D  GLV   D+ S  + LG  A+ PR   +
Sbjct: 233 EHHLVTRDTVGDEVAWFAE--HIRENEVPSD--GLVLIYDDISYGQSLGTTAKFPRDSFA 288

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
            K+ ++   T + +I+    RTG++ PVA  +PV + G  ++ A++HN   ++ L     
Sbjct: 289 FKWEDEVRKTTIREIEWSPSRTGLINPVAIFDPVELEGTTVSRASVHNISIMEEL----- 343

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                 ++ +GD V V +A  +IP++ + +       +     P  CP+C+      +  
Sbjct: 344 ------ELGIGDTVTVYKANMIIPQIAENLTR-----SGVSEIPKECPVCKKPTKISMEN 392

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
            T  L   +       C A+ ++    F SRDA NIEGL +  L+ F  +      ++  
Sbjct: 393 NTKTLYCMNS-----KCQAKHVKSFSLFASRDAMNIEGLSEATLEKFIING----YVKDF 443

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
            DIF L R +     +I+ + GFG+ S  NL   I   R  +L R I+SLGI ++G   A
Sbjct: 444 TDIFHLDRYE----AEIKTMEGFGEKSYENLRKRIENARKTTLPRLIYSLGIPNIGISNA 499

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + + +         ++   +I    ++   L  +  VG +IA   VE++++  ++   + 
Sbjct: 500 KMICRA------LGEDPKRVIRATEEE---LSAISGVGGVIAGTFVEYFKDTAHVDVFDR 550

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK-IQRHKAQEYVTQLGAVVSAILSRKTD 686
           LLKEV  +    E++   +      V TG+++  + R + +E + + G  V+  ++ KT+
Sbjct: 551 LLKEVELTKETSEED--QKFAGVNFVITGSVEHFVNRAQVKEEIEKRGGKVTGSVTSKTN 608

Query: 687 IIIVGDNPG--SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +I  D     +K +KA++LG+ I++EE FL ++ +
Sbjct: 609 YLINNDTGSGTAKNKKARELGIPIISEEDFLQMMNE 644


>gi|6573451|pdb|1B04|A Chain A, Structure Of The Adenylation Domain Of An Nad+ Dependent
           Ligase
 gi|6573452|pdb|1B04|B Chain B, Structure Of The Adenylation Domain Of An Nad+ Dependent
           Ligase
          Length = 318

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 181/324 (55%), Gaps = 11/324 (3%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA +  + L + ++ +   YY   +P + D+EYD L +   AI   +P+L  S+ P   
Sbjct: 4   QQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPT-- 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +IGG    +  KV H +P +SL   +   DLR F  R+     +++     +  E  I
Sbjct: 62  -QRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRV-----RQEVGEAAYVCELAI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L L  P  +E RGE ++ 
Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLKEPVSLEARGEAFMP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253
           K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL     +    
Sbjct: 174 KASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGIAS 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  ++ LGF VN   R+      ++++ +E    R  LPY+IDG+V KVD F+ Q+
Sbjct: 234 HSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQR 293

Query: 314 QLGERARSPRWMISHKFAEKQAST 337
            LG  A+SPRW I++KF  ++  T
Sbjct: 294 ALGATAKSPRWAIAYKFPAEEVVT 317


>gi|215447287|ref|ZP_03434039.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T85]
          Length = 416

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/437 (32%), Positives = 225/437 (51%), Gaps = 33/437 (7%)

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
           + Y+ E    R  + ++IDG+V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLD
Sbjct: 5   IDYWGEH---RHEVDHEIDGVVVKVDEVALQRRLGFTSRAPRWAIAYKYPPEEAQTKLLD 61

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           I + +GRTG +TP A + PV + G+ +  ATLHN   IK         R G  + +GD V
Sbjct: 62  IRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIK---------RKG--VLIGDTV 110

Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
           ++++AG+VIP+V+  +V  R    + F  P+ CP C S +  +   K G   A  RC   
Sbjct: 111 VIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPLAPE---KEGD--ADIRCPNA 165

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q  ER+ H  SR+  +IE LG +      +++     I    ++F L  R    T
Sbjct: 166 RGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRT 221

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G    +   L  +++K +   L R + +L IRHVG   AR+LA  + S     
Sbjct: 222 DLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGS----- 276

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
             ++ I A + D    L  V  VG  IA A+ E++    +   V+         +   ++
Sbjct: 277 --LDAIAAASTD---QLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDE 331

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           +V   +    +V TG+L    R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA
Sbjct: 332 SVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKA 391

Query: 702 QQLGVKIMNEEQFLFLL 718
            +LGV I++E+ F  LL
Sbjct: 392 VELGVPILDEDGFRRLL 408


>gi|328869954|gb|EGG18329.1| BRCT domain-containing protein [Dictyostelium fasciculatum]
          Length = 842

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 210/813 (25%), Positives = 364/813 (44%), Gaps = 163/813 (20%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-------PDLARS 68
           Q   ++ +L  +I+ ++D YY  S+ +I D EYD L ++ + +   +        DL+ S
Sbjct: 70  QLVDDIKTLRNDINKYNDLYYNKSETVISDFEYDMLFKKLETLEQLYESQYSGSTDLSAS 129

Query: 69  -EDPNGPLNKIGGEM----NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                 P+N++G  +    N    KV H +  LSL+  ++ EDL  F +R+     K   
Sbjct: 130 GSGSTTPINQVGAPIATAGNERGEKVKHIVRMLSLDNTYSKEDLMAFESRVLGNLSKSSS 189

Query: 124 N--------SIFFTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSA-CIRAIPTI 173
                    ++ F+ E K DG  ++I Y+  GK    A RGDG  GE ++   +  IP++
Sbjct: 190 GISNNNNNNNLEFSCELKYDGIGLSIVYDSFGKLERIATRGDGDIGEIITTNALYYIPSL 249

Query: 174 PR------------VLSLNIPEIIEVRGEVYISK------NDFLALNDEMIAVGRKPYAN 215
           P+             L+L   + IEVRGEV   K      N + ++NDE+       Y N
Sbjct: 250 PKQISTSHLVNNNNNLTLGQNDKIEVRGEVVFKKSQLEKLNTWRSMNDEV------EYKN 303

Query: 216 PRNAASGILRRL---------NPTDITRYLNFFVHGL-------------------GKTS 247
            RN  SG LR +         NP  I    +F  + L                      +
Sbjct: 304 TRNIVSGKLRSILDPKQEELDNPFGIE--FDFISYQLFIHQNQNNQINNNQNNNNQNNNN 361

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGV--------RQANTFHGIVSYYNEMKSIRSTLPYDI 299
                    +L+K   +GF ++           R ++     +  ++  K  R +  +DI
Sbjct: 362 TNTHNNNIILLEK---IGFNIDRNAILVGSLSQRDSSRLEEFIKMWSGEK--RESFDWDI 416

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+    Q  LG+  RSPRW +++KF  +   T +  I +QIGR+G +TPVA +E
Sbjct: 417 DGIVVKVNSLEKQAILGQANRSPRWAVAYKFGARSMPTVVKSIQLQIGRSGKVTPVAEVE 476

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV+I G  ++ ATL+N  +I+ L            +R G RVLV+RAG+VIPK++  + +
Sbjct: 477 PVDIHGVTVSRATLNNLLFIQKL-----------GVRTGSRVLVERAGDVIPKIIQSL-D 524

Query: 420 ERHPDAQPFSFPSF--CPI---------CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
            + P  +      F  CP          C   +   L+   G     + C     C  Q+
Sbjct: 525 AKEPMTKKELLDMFDRCPTSATDGDSLKCPCALGSPLSQPDG--YQDYYCFES-NCPNQR 581

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           L+ +  +VS+D  N+ G+G  Q+    +       I+   D+++L  ++     ++  + 
Sbjct: 582 LQSISWYVSKDGMNMTGIGPSQIKVLLEYG----LIQDIGDLYSLADKKD----QLLKLR 633

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           GF D  V N+ +S+ K +  +L     +LGI  VG    + LA+ + + ++ A       
Sbjct: 634 GFSDKKVANMIESVEKSKKENLAHLFCALGIPGVGKASCKWLAERFTTIESLATA----- 688

Query: 589 AHNNDDWLSLIRVPLVGDI---IAQAIVEFYQ--NPRNICAVEALLKEV-------SPSI 636
                   SL  + +VGD+   I+  I  ++   + ++   +E LL  +       S S 
Sbjct: 689 --------SLQDIEVVGDLGPNISTNIYYYFHPTDQQSKDGIEKLLSIIQKHNVYDSQSQ 740

Query: 637 GRHE------KNVSSE-------IENKKLVFTGTLQKIQRHKAQEYVTQ-LGAVVSAILS 682
            R++      KN S+         ++K +V TG  + + R + Q+ V    G ++ + + 
Sbjct: 741 NRNQNRSDEKKNSSTTTLQQSSIFKDKNVVVTGKFKNMTREEIQDIVQHNFGGIIQSQIR 800

Query: 683 RKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
           + T+ +++G + G SK+ KA+Q G  I+ E +F
Sbjct: 801 KNTNYLLMGQDAGSSKITKAEQNGTTIITENEF 833


>gi|218133029|ref|ZP_03461833.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991902|gb|EEC57906.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC
           43243]
          Length = 656

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/704 (27%), Positives = 335/704 (47%), Gaps = 89/704 (12%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87
            YY   + I+ + EYDAL          + +LA  E   G      P   +G E+   L 
Sbjct: 25  AYYAQGQEIMSNYEYDAL----------YDELAELEKKTGCVLASSPTVNVGYEVLSELP 74

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H  P LSL K  ++++L  ++       QK         L  K+DG  I + Y  G+
Sbjct: 75  KERHEKPMLSLGKTKSVDELVSWLGS-----QKG-------LLSWKMDGLTIVLTYNNGE 122

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGEVYISKNDFLALNDE 204
              A  RG+G  GE ++   +    +P    + IP   E+I +RGE  I  +DF  +N+ 
Sbjct: 123 MTKAVTRGNGEVGEVITGNAKVFANVP----VTIPYKGELI-LRGEAVIRYSDFEKINEL 177

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKM 261
           +   G K Y NPRN  SG +R+LN + IT  R +NFF   L K   + F   + E L+ +
Sbjct: 178 IPEEGAK-YKNPRNLCSGSVRQLN-SRITKERNVNFFAFTLVKADGVDFKNSRREQLEWL 235

Query: 262 RCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
              GF  V      A+     VS++    +I+    +  DGLV   D+ +    LG  A+
Sbjct: 236 ASQGFQTVEYKEVTADNLRSTVSWFE--NAIKDN-DFPSDGLVILYDDIAYGDSLGMTAK 292

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
            PR  ++ K+ ++ A T+LL+I+    RTG++ PVA  EPV + G  ++ A++HN   ++
Sbjct: 293 FPRNSLAFKWTDETAQTKLLEIEWSASRTGLINPVAVFEPVELEGTSVSRASVHNISIME 352

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            L           ++ VGD + V +A  +IP++   +      D      P  CP+C  +
Sbjct: 353 EL-----------ELGVGDTIEVYKANMIIPQIAKNLTRSGVKD-----IPQICPVCGMK 396

Query: 441 V-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
             +R LN        +  CT    C A+ ++   HFV+RDA NI+GL +  L+ F +   
Sbjct: 397 TEIRSLND-----AKSLYCTNP-DCQAKHVKSFVHFVARDAMNIDGLSEATLEKFIQHG- 449

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +   AD++ L   + T    I ++ G G  S  N+  +I++ R+ +L + I+SLGI
Sbjct: 450 ---MLHEFADLYHLDDYRDT----IIDMDGLGVKSYDNMMAAIDRSRHTTLPKLIYSLGI 502

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            +VG   A+ + K           ++ I++   ++   L  +  VG++IA + V ++ + 
Sbjct: 503 ANVGLSNAKMIVKN-------TGTLDRILSATREE---LCAIDGVGEVIADSFVSYFADD 552

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVS 678
           ++   +  L+ E+           ++ + +   V TG+L     R++ +E + +LG  V+
Sbjct: 553 KHRQGLNRLVAELDIEAEEMASGENAVLADMVFVITGSLNHYSNRNELKELIEKLGGKVT 612

Query: 679 AILSRKTDIII--VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             ++ KT  +I     +  SK + A +LGV ++ E++F+ ++++
Sbjct: 613 GSVTGKTSYLINNDSTSSSSKNKTAAKLGVPVITEDEFIKMIEE 656


>gi|149924280|ref|ZP_01912652.1| DNA ligase, NAD-dependent [Plesiocystis pacifica SIR-1]
 gi|149814860|gb|EDM74426.1| DNA ligase, NAD-dependent [Plesiocystis pacifica SIR-1]
          Length = 706

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 196/733 (26%), Positives = 323/733 (44%), Gaps = 119/733 (16%)

Query: 35  YYQYSKPIILDSEYDALK---RRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK--- 88
           Y+    P I D  YD L    RR D  AH   D      P GP+ +     ++   +   
Sbjct: 46  YWNLHAPTIPDPVYDRLVEGLRRLDP-AHPVLDELGEATPEGPVIEADATASIPPAERLG 104

Query: 89  --VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE-K 145
             V H+   LSL+K +  EDL          W +K +  +     PK+DG   ++RY+ +
Sbjct: 105 APVRHTRAMLSLDKCYGPEDLYS--------WTEKFEGEVLVM--PKMDGVACSLRYDAE 154

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------SLNIPE----IIEVRGEVYISK 195
           GK   AA RG+G  GED++  +  +  +P+ L       L  P+     +EVRGE+++  
Sbjct: 155 GKLFLAATRGNGSEGEDITVNVLEVEDVPQQLDPAAFAELPGPDGAAPAVEVRGELFMKL 214

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
           + F    ++        Y+NPRN  +G ++         Y L+F+ + L  T       +
Sbjct: 215 SVFERYKEQ--------YSNPRNLTAGAIKHKERGKTKAYTLSFYAYDLQGTE---LPTE 263

Query: 255 YEMLQKMRCLGFPVNN------GVRQANTFHGIVSYYNEMKSIRST--LPYDIDGLVYKV 306
            E    +R LGF V        G  QA         Y    + RS   + Y+IDG+VY+ 
Sbjct: 264 REKFASLRALGFAVEECDFVPRGELQAA--------YERWSARRSADEIDYEIDGVVYRA 315

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E + Q+++GE    PRW +++KF     +T L ++   + RTG +TPVA  +P+ + GA
Sbjct: 316 SEVAEQRRMGETGHHPRWSMAYKFQGDTGTTTLEEVLWSVSRTGTITPVAIFKPIELSGA 375

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +I  A L N ++   L            +  G  + V R G VIP V  ++      + +
Sbjct: 376 MIARAGLFNLNHFDEL-----------GLTAGAAIEVTRRGGVIPYVERVVTP--GAEGE 422

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P  CP C S  VR    + G+ +    C+    C + +L  L+HF      +I+G 
Sbjct: 423 TFDIPKRCPACNSEAVRR-KKRDGEFL---YCSKPEGCGSARLGELQHFAK--VVDIQGF 476

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +    ++ D    +  PAD +TL+         +E     G  S  NL   ++  R
Sbjct: 477 GPKVVT---QAVDAGL-LSSPADFYTLR------VEDLEEFDRLGRRSAENLVAQVDAHR 526

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I L  F+ SLGI H+G + A  L          A E   +         +L+ V  + D
Sbjct: 527 RIELPIFLQSLGIDHLGKQNAVLL----------ANEFRTLAGVRGVSREALLEVKGIKD 576

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-----------VSSEIENKKLVFT 655
            IA A++   +    +  ++ALL+ V+  +   E++               +  K  +FT
Sbjct: 577 AIADALLAGLETRAEL--IDALLEHVT-VVDLPERDPEAEAEAAAAAAEGALGGKTFLFT 633

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG---SKLEKAQQL-----GVK 707
           G L+   R +AQE V   G V ++ +S+  D ++VG   G   SK +KA++L      +K
Sbjct: 634 GALEAFTRKQAQEKVEANGGVPASGVSKSLDYLVVGAGKGAKSSKQKKAEKLIDGGAALK 693

Query: 708 IMNEEQFLFLLQQ 720
           +++E  FL ++ +
Sbjct: 694 VISEGDFLAMIGE 706


>gi|153813883|ref|ZP_01966551.1| hypothetical protein RUMTOR_00089 [Ruminococcus torques ATCC 27756]
 gi|331088166|ref|ZP_08337086.1| DNA ligase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848279|gb|EDK25197.1| hypothetical protein RUMTOR_00089 [Ruminococcus torques ATCC 27756]
 gi|330408822|gb|EGG88285.1| DNA ligase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 653

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 191/696 (27%), Positives = 328/696 (47%), Gaps = 74/696 (10%)

Query: 34  CYYQYSKPIILDSEYDAL-KRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
            Y Q +  I+ + EYD L              LA S     P   +G E+   L K  H 
Sbjct: 23  AYEQENTEIMSNFEYDRLYDELLSLEKELETTLASS-----PTVNVGYEVLSELPKERHE 77

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
            P LSL+K  ++E LR+F+          D  ++   +  K+DG  I + YE G    A 
Sbjct: 78  TPMLSLDKTKDVERLREFLG---------DQQAV---ISWKMDGLTIVLTYENGVLKKAV 125

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            RG+G  GE V+   +    +P  LS+     + +RGE  IS  DF  +N+E I      
Sbjct: 126 TRGNGEIGEVVTNNAKVFRNVP--LSIPFKGELVLRGEAVISYKDFEKINEE-IGDADAK 182

Query: 213 YANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPV- 268
           Y NPRN  SG +R+LN  ++T  R + F+   L K   + F   +   L+ ++  GF V 
Sbjct: 183 YKNPRNLCSGSVRQLN-NEVTAKRNVRFYAFTLVKADNVDFENSRAYQLKWLQEQGFDVV 241

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRST-LPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
            + +   +T    V+++ E   IR   +P D  GLV   D+ S  + LG  A+ PR   +
Sbjct: 242 EHHLVTRDTVGDEVAWFAE--HIRENEVPSD--GLVLIYDDISYGQSLGTTAKFPRDSFA 297

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
            K+ ++   T + +I+    RTG++ PVA  +PV + G  ++ A++HN   ++ L     
Sbjct: 298 FKWEDEVRKTTIREIEWSPSRTGLINPVAIFDPVELEGTTVSRASVHNISIMEEL----- 352

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                 ++ +GD V V +A  +IP++ + +       +     P  CP+C+      +  
Sbjct: 353 ------ELGIGDTVTVYKANMIIPQIAENLTR-----SGVSEIPKECPVCKKPTKISMEN 401

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
            T  L   +       C A+ ++    F SRDA NIEGL +  L+ F  +      ++  
Sbjct: 402 NTKTLYCMNP-----KCQAKHVKSFSLFASRDAMNIEGLSEATLEKFIING----YVKDF 452

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
            DIF L R +     +I+ + GFG+ S  NL   I   R  +L R I+SLGI ++G   A
Sbjct: 453 TDIFHLDRYE----AEIKTMEGFGEKSYENLRKRIENARKTTLPRLIYSLGIPNIGISNA 508

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + + +         ++   +I    ++   L  +  VG +IA   VE++++  ++   + 
Sbjct: 509 KMICRA------LGEDPKRVIRATEEE---LSAISGVGGVIAGTFVEYFKDTAHVDVFDR 559

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK-IQRHKAQEYVTQLGAVVSAILSRKTD 686
           LLKEV  +    E++   +      V TG+++  + R + +E + + G  V+  ++ KT+
Sbjct: 560 LLKEVELTKETSEED--QKFAGVNFVITGSVEHFVNRAQVKEEIEKRGGKVTGSVTSKTN 617

Query: 687 IIIVGDNPG--SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +I  D     +K +KA++LG+ I++EE FL ++ +
Sbjct: 618 YLINNDTGSGTAKNKKARELGIPIISEEDFLQMMNE 653


>gi|301168580|emb|CBW28170.1| DNA ligase [Bacteriovorax marinus SJ]
          Length = 628

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 180/704 (25%), Positives = 332/704 (47%), Gaps = 81/704 (11%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           + K +  LE+EI +H   YY+  +  I D EYD L+           D  R   P+ P+ 
Sbjct: 2   SNKRIQELEKEIEHHKVLYYK-GQTEIPDHEYDKLE-----------DELRELSPDSPIL 49

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+ G +  +  KV H    LSL K +  ++L  ++         ++  S++     KIDG
Sbjct: 50  KMVGSVVTAEDKVKHDEKMLSLAKTYKEDELATWM-------DGREAISMY-----KIDG 97

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
              ++ YE G  V A  RGDG  GE++++    I TIP   ++   + IEVRGE+Y  + 
Sbjct: 98  MSCSLIYENGNLVLAKTRGDGTFGENITSKALWIDTIPN--TIKEEKRIEVRGEIYCDEE 155

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F +L+D+M+A+G +   + RN  +GI+ R +   +++ L F    L    +I  + + E
Sbjct: 156 HFFSLSDDMVALGLEKPTSQRNIVAGIISRKDHLQLSKKLTFKAFEL--LGDISVQTEVE 213

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +   GF         +    +    +E K   +   Y IDG+V+  ++    ++LG
Sbjct: 214 KVKYLEAQGFETLEYTLHKDA-KSLSKTIDEAKDFMAEGDYLIDGIVFSFNDQKWHRELG 272

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E A  PR+ ++ KF  +   T + +I  Q+ R GILTPVA ++PV + GA I+  TLHN 
Sbjct: 273 ETAHHPRYKMAFKFQGESRETVIENILWQVSRNGILTPVANVKPVELSGAKISRVTLHNF 332

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             +K             +++ GDR+ + R+GEVIPK ++++        + FS+P  CP 
Sbjct: 333 GLVKQF-----------ELKQGDRIEIIRSGEVIPKFLEVV----ESSDEEFSYPKTCPS 377

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   +         ++V          C A   E + +++ +    I+ L  ++L+   +
Sbjct: 378 CDEEI---------EVVDIRLICRNSECPAIVKESILNYIQK--IGIDDLSSKRLEELIR 426

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     ++I +D++ L      +  K++  L       T L  +I K + + L  F+ +
Sbjct: 427 AK---LVLKI-SDLYKLNMESLLTLDKVKEKLA------TKLLGAIEKSKTVDLVTFLSA 476

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI   GA       K   +  +  +++ ++            ++ L+     ++  +FY
Sbjct: 477 LGISG-GA--YNKCEKVVFAGHDSLEKVKSLTPD---------KLILIDGFAKKSADDFY 524

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            +      +   L+ V  S     K V +++ NKK+  TG+L + +R   +  +     +
Sbjct: 525 LSLSEKFPLIEELESVGFSFEEVIK-VETKVSNKKICITGSLSE-KRSVIESKIRDASGI 582

Query: 677 VSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLL 718
           V + +S+ TDI++  D     SKL+KA+ LG+ I+ EE+ + ++
Sbjct: 583 VVSSVSKNTDILVTNDQSSGSSKLKKAKDLGILIITEEELISMI 626


>gi|281414408|ref|ZP_06246150.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
          Length = 549

 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 157/550 (28%), Positives = 243/550 (44%), Gaps = 95/550 (17%)

Query: 254 QYEMLQKMRCLGFPVNNGVRQAN-----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           Q+E    +   G PV+   R+           +V+   E    R  L ++IDG+V K D 
Sbjct: 10  QHEAYDALASWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHEIDGIVLKADA 69

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+ Q+ LG  +R PRW  ++K+  ++  T L DI + +GRTG +TP A LEPV + G+ +
Sbjct: 70  FADQRYLGHTSRVPRWAAAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVLEPVTVAGSTV 129

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP----- 423
           + ATLHN+D +K            + + +GD V+V++AG+VIP+VV  ++  R       
Sbjct: 130 SLATLHNQDVVK-----------AKGVLIGDTVVVRKAGDVIPEVVGPVLPLREKAIEAG 178

Query: 424 -DAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            + + F  P+ CP C +     L P K G +    RC    +C AQ   R++H  SR AF
Sbjct: 179 RELREFVMPAHCPSCGT----PLAPAKEGDV--DLRCPNARSCPAQLAGRVEHLASRGAF 232

Query: 482 NIEGLGKQQLDFFFK--SEDPA-----------FSIRIPADIFTLQR---------RQQT 519
           ++E LG++   +  +   EDPA             I   A IF L           R + 
Sbjct: 233 DVEALGEEAARWLVQGPGEDPAEHEGHVRPEGPGPITAEAQIFDLASGTPEAITGPRGED 292

Query: 520 STTKIENILGFGDV--------------------------------------SVTNLYDS 541
             T ++  LG   V                                      +   L+D 
Sbjct: 293 GLTDLQRSLGAVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPTANTLRLFDE 352

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + K ++  L R + +L IRHVG   ARSLA  + S            A    D   L  +
Sbjct: 353 LEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALRA------AAEAGDRDRLAEI 406

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG IIA A++E++    +   V+             +++    +E   +V TG+L+  
Sbjct: 407 DGVGPIIADALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPRTLEGLTVVVTGSLEGF 466

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A+E +   G   S  +S+KTD ++ G+  GSKL+KAQ LGV ++  EQ   LL   
Sbjct: 467 SRDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLEPEQVTALLAGG 526

Query: 722 NTTLRIHDDD 731
              +R  D D
Sbjct: 527 PDAVRPADTD 536


>gi|153217073|ref|ZP_01950837.1| DNA ligase [Vibrio cholerae 1587]
 gi|124113903|gb|EAY32723.1| DNA ligase [Vibrio cholerae 1587]
          Length = 324

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 199/359 (55%), Gaps = 39/359 (10%)

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R 
Sbjct: 3   VGGVTVSNATLHNADEIERLG-----------VMVGDTVVIRRAGDVIPQIVSVVLERRP 51

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            +A+   FP+ CP+CQS    D+    G+ VA  RC+GGL C AQ+ E LKHFVSR A +
Sbjct: 52  ENAKSIVFPTRCPVCQS----DVERVEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMD 105

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           +EGLG + ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++
Sbjct: 106 VEGLGDKVIEQLVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDAL 155

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           NK +  +L +F+++LGIR VG   A +LA+++LS +   Q                I VP
Sbjct: 156 NKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVP 205

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
            VG ++A  +  F+   RN   +  LL++    P++      V S +  K +V TG+  +
Sbjct: 206 DVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQ 265

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R+ A+  +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 266 LSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 324


>gi|168017901|ref|XP_001761485.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687169|gb|EDQ73553.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1163

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/353 (34%), Positives = 190/353 (53%), Gaps = 24/353 (6%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+    P+I DS YDAL R    +    P  A  E       K+G    L + KV H++P
Sbjct: 334 YHTLGNPLISDSAYDALVRELKDLESKLPAEASEESVTA---KVGAPPPLEIAKVRHAVP 390

Query: 95  TLSLEKIWNIEDLR----KFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
            LSL  ++  ++L+    +   R+ R    +  ++  + +EPK+DG  +T+ YE+GK V 
Sbjct: 391 MLSLAAVYKEDELKAWHERLQQRLNRMSNGEQPSTGAWVVEPKVDGIALTLLYERGKLVC 450

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLS-----LNIPE-IIEVRGEVYISKNDFLALNDE 204
           AA RGDG  GEDV+   R +  +P VLS     +N+ E ++EVRGEVY++  DF  LND 
Sbjct: 451 AATRGDGAEGEDVTHNARNLKGVPEVLSDHHKEINLQESVLEVRGEVYMTLLDFQELNDM 510

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL----------GKTSEIFAKG 253
            +  G KP+ANPRNA +G +R L   D   R L+F  + +           +T     + 
Sbjct: 511 KVKGGEKPFANPRNATAGSMRILKNRDGDDRRLSFMAYAILSPEDNVSAGVETPPRLVRA 570

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q++ L  ++ L F VN+  R+  +F   + Y    +  RSTL Y+ DG+V+K+++ + Q 
Sbjct: 571 QWDALNLLKQLDFSVNDDNRKFASFDDALHYATRWRDSRSTLKYESDGVVFKINDLATQA 630

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +LG     PRW ++ KFA  +  T L  I++ IGR+G + P ARL+ + +  +
Sbjct: 631 KLGVVGSDPRWAVAWKFAATEVVTILEGIELSIGRSGAIIPNARLKDITVSSS 683



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 140/345 (40%), Gaps = 70/345 (20%)

Query: 412  KVVDIIVNERHPDAQPFSFPSFCPICQSR--VVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
            +VV ++   R      +  P  CP C     V +D N  +        C     C  +  
Sbjct: 830  QVVQVLRELRSDHMHSWVPPDRCPFCNGELTVSKDNNITS--------CCNN-KCPGRHS 880

Query: 470  ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
             ++KHF ++  F  +GLG   L       + A  +  PAD + L          +  + G
Sbjct: 881  RKIKHF-AKTLF--KGLGPSILSDL----EEAGMVVDPADFYALD------VVSLSRLDG 927

Query: 530  FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
             G+ S   L  +I + +  +L   I +LGI  VG   A+ L +++ S +        ++A
Sbjct: 928  LGEKSAAKLVKAIEESKGKALWELITALGIPSVGVTAAKLLEQWFGSMERL------LVA 981

Query: 590  HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-------PSIGRHE-- 640
               +    L+ VP +G + A AI ++  +P N+  V + +KE         P I  H   
Sbjct: 982  SREE----LLLVPGIGTVSASAIHDWCTDPFNVQLVSS-IKEAGFSPTFNDPEIENHAAG 1036

Query: 641  ---------------KNVSSE----------IENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                           +   SE          ++ K +V TG  ++  R + ++ V   G 
Sbjct: 1037 NALSDSASQTTTSKVRTTDSEESKGNVETPRLQGKNVVVTGEFEEYSREQIEQLVVLNGG 1096

Query: 676  VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             +   ++ KT  I+ G +PG SK+ KA QL V +++   F  LL+
Sbjct: 1097 QLRKSVNSKTSFIVAGQSPGPSKMTKAAQLAVPVLDISSFQQLLE 1141


>gi|56966058|pdb|1TAE|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
 gi|56966059|pdb|1TAE|B Chain B, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
 gi|56966060|pdb|1TAE|C Chain C, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
 gi|56966061|pdb|1TAE|D Chain D, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
 gi|212374930|pdb|3BA8|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
           Dependent Dna Ligase
 gi|212374931|pdb|3BA9|A Chain A, Structural Basis For Inhbition Of Nad-Dependent Ligase
 gi|212374932|pdb|3BAA|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
           Dependent Dna Ligase
 gi|212374933|pdb|3BAB|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
           Dependent Dna Ligase
          Length = 332

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 185/331 (55%), Gaps = 10/331 (3%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRL 339
           F+LQ +LG   ++PRW I++KF  ++A T L
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVL 325


>gi|166788183|emb|CAP40308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma solani]
          Length = 333

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 188/340 (55%), Gaps = 12/340 (3%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A K++ SL + ++  +  YY  S P I D +YDAL +    +   +P   +   P  P  
Sbjct: 5   AIKKIKSLVKLLNEANYQYYNLSNPKINDQQYDALLKELIILETNYP---QHRLPYSPTL 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           KIGG +        H+IP +SL+  +NIE+L+ F  RI +      + S     E KIDG
Sbjct: 62  KIGGFVEKKFKNFHHTIPMMSLDNAFNIEELKNFYDRIVKI-----NPSFSLLTELKIDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I ++Y+KG    A  RG+G  GED++  ++ I T+P  L L+ P  IEVRGE+Y+S  
Sbjct: 117 VAINLKYKKGILTQALTRGNGILGEDITKNVQTIKTVP--LKLSQPIDIEVRGEIYLSYP 174

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN +     + P+ANPRNAASG LR+LN   +  R L+ F++ +  +  +    Q 
Sbjct: 175 AFEKLNQKQKENNKTPFANPRNAASGTLRQLNSKIVAQRNLSIFIYNIA-SPYLIKPTQL 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L+ +  LGF VN     A TF  ++      K I+ T PYD DG+V KV+E +L   +
Sbjct: 234 ASLEFLIQLGFTVNPHYNLALTFEDLLVKIQNYKVIKDTQPYDTDGVVIKVNELALHALI 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           G  +++P+W I++KF  K + + + DI  Q+GRTG++TP+
Sbjct: 294 GATSKAPKWAIAYKFPAKTSQSIVTDIIFQLGRTGMITPI 333


>gi|56966057|pdb|1TA8|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
          Length = 332

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 184/329 (55%), Gaps = 10/329 (3%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+    +K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  + L  P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQAST 337
           F+LQ +LG   ++PRW I++KF  ++A T
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAET 323


>gi|219882959|ref|YP_002478123.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
 gi|254778150|sp|B8HIQ9|DNLJ2_ARTCA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|219861965|gb|ACL42306.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
          Length = 701

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 176/653 (26%), Positives = 298/653 (45%), Gaps = 80/653 (12%)

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H+ P  SLEK    ED       +  F  K     I    EPKIDG  I++RYE GK 
Sbjct: 103 VEHATPMKSLEKPG--EDA------VIEFAAKHPKAVI----EPKIDGLAISVRYENGKM 150

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
           V AA RGDG++GEDV+  +R +  +P +         EVRGE+Y++  +    N    A 
Sbjct: 151 VRAARRGDGYTGEDVTDRVRGVDGLPEMAGDGD---YEVRGELYLNDENKAKANAIRQAA 207

Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
           G+ P+AN RN  +G+L + + +    Y   F      T+        + +Q++  +GF  
Sbjct: 208 GKAPFANARNGVAGMLNKQDGS----YAGLFSFAAYSTTIDEKADHLDSMQQLEGMGFTT 263

Query: 269 NNGVRQANTFHG--IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
              +   +       ++    + + R  L + +DG V KV+  + + +LGE +R+P+W +
Sbjct: 264 ARSLLPQSVLDAEDPMAAIAALGAERKGLNFLMDGAVLKVNTAAERAELGEGSRAPKWAV 323

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K+   +  T + DI+  IG+TG L+  ARL PV + G+++  A+LHN  +++      
Sbjct: 324 AYKYPAVEEPTVIEDIEYNIGKTGRLSIRARLTPVEVDGSVVEYASLHNVGHLQAA---- 379

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                  D+R+GD V   +A ++IP+V     + R   +QP+  PS CP C         
Sbjct: 380 -------DMRIGDTVSAYKANDIIPQVHLPRADLRDESSQPWQPPSVCPQCSEPF----- 427

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA-FNIEGLGKQQLDFFFKSEDPAFSIR 505
            K+ +L   H       CS     R+ +  SRDA  +IEGLG    D   + +     ++
Sbjct: 428 DKSTELWRCHTPE----CSVSG--RISYAASRDAGLDIEGLGGSIGDALIEKD----LVK 477

Query: 506 IPADIFTLQRRQQTSTTKIENILG----FGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +D+F L   Q       E   G     G  +   +   I K ++  L R I +L +R 
Sbjct: 478 DVSDLFYLGEDQLAEVELGETSTGGTRTLGQKNAAKIMAEIEKAKSQPLNRVITALSMRF 537

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
            G    R LA  + + +       + +A+          V  +G   A+ I   ++  + 
Sbjct: 538 TGRTFGRRLAAEFGTMEALQAATVSQLAN----------VEGIGQKKAEVI---HEQLKK 584

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKL----------VFTGT-----LQKIQRHKA 666
              V A L+E   ++G  +   ++  +  KL          V TG+     L  + R   
Sbjct: 585 NAPVIAKLREAGVNMGAPKAAPAAGAKAPKLTKPDGKPMNVVVTGSVKGSPLGSLSRSGV 644

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           QE +   G   S  +S+ TD+++ G+   SK  KAQ+LG++I+  ++F  +++
Sbjct: 645 QELIEAKGGKASGSVSKTTDLLVCGEPGSSKFLKAQELGIRIVTPDEFAQMVE 697


>gi|218515813|ref|ZP_03512653.1| NAD-dependent DNA ligase LigA [Rhizobium etli 8C-3]
          Length = 216

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/212 (46%), Positives = 142/212 (66%), Gaps = 3/212 (1%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+     +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  DSPS---RHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
           GEVY++K+DFLALN +M A G++ Y NPRN A
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTA 216


>gi|260588405|ref|ZP_05854318.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|260541279|gb|EEX21848.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
          Length = 644

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 188/721 (26%), Positives = 325/721 (45%), Gaps = 101/721 (14%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------ 73
           E+ ++ +++   +  YYQ S+ I+ + +YD L          +  L   E   G      
Sbjct: 3   EMRAIIEQLKAANVAYYQESREIMSNYDYDKL----------YDKLVDMEKETGVIYSDS 52

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +  +    L K  H    LSL+K  ++E L+ +I+         D + I   L  K
Sbjct: 53  PTQSVANDFLDFLPKEKHEKKMLSLDKTKSVETLKSWIS---------DKDGI---LSWK 100

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGEV 191
           +DG  + + Y+ G+   A  RG+G +GE ++  +     +P    L IP  E + +RGE 
Sbjct: 101 LDGLTVVLTYDNGELQKAVTRGNGTTGEIITQNVSRCKGVP----LKIPYKEKLILRGEA 156

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
            IS  DF  +N ++  VG + Y NPRN ASG +R L+ ++   R +   +  L   S+  
Sbjct: 157 VISYTDFDRINSQIEDVGAR-YKNPRNLASGSIRLLDASESQKRNVQVIIFRLISGSKF- 214

Query: 251 AKGQYEMLQKMRCLGF------PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            K   +    +  +GF      PVN      +     V ++ + K   + +P   DGLV 
Sbjct: 215 -KTMDKQFNWLSEIGFNVVEHYPVN-----KDNIEECVKFF-KRKIENNDIP--TDGLVV 265

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
             +       LG  ++  R   + K+ ++ A T L  I+    RTG+L PVA  EPV + 
Sbjct: 266 SYNNTDYGNSLGNTSKFERHSFAFKWKDEVAETTLKKIEWSPSRTGLLNPVAIFEPVELE 325

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A++HN   IK L            + +GD + V ++  +IP++V     E    
Sbjct: 326 GTTVSRASVHNISIIKEL-----------KLGIGDTIKVIKSNMIIPQIV-----ENSTK 369

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           +     P  CPIC      D N           C     C  + + +  HF  RDA NIE
Sbjct: 370 SNNLDIPKQCPICGG----DTNIICSNDTEVLMCM-NTHCPEKLIGKFVHFCERDAMNIE 424

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+ +  +DF  K       ++   D + L + + T  +    I GFG  SV  L+ SI K
Sbjct: 425 GMSEATVDFLVKKG----WLKTFKDFYNLSQYKATWMS----IPGFGKKSVEKLFLSIEK 476

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            + +S ER +++LGI  +G   +R +  ++ ++ +  + +         +     ++   
Sbjct: 477 SKQVSPERLLYALGIPKIGRSQSREIFNHFDTWDDLIKSMK--------EKFDFSKLDGF 528

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQK 660
           GD++ ++I ++++       +E L+K     I   E+ + +E    + NK  V TG+L K
Sbjct: 529 GDVLNKSIYDWFKEDYKSEEIEQLVK-----ILVFEEKIKTEELLSLTNKTFVITGSLNK 583

Query: 661 I-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFL 717
              R+  +  +   G  V+  ++ KT  +I  D     SK +KA++LG+ I++EE+FL L
Sbjct: 584 FSNRNDLKSTIETHGGKVTGSVTSKTHYLINNDTTSNSSKNKKAKELGIPIISEEEFLTL 643

Query: 718 L 718
           L
Sbjct: 644 L 644


>gi|189490484|ref|YP_001957054.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
 gi|164609549|gb|ABY63158.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
          Length = 695

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 170/610 (27%), Positives = 287/610 (47%), Gaps = 46/610 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E   L + I +++  YY     II DS YD L      +    P+    + P      
Sbjct: 4   RHEYDVLCKRIRHYNYMYYVLDISIIPDSLYDQLLISLKLLEKEHPEWVTRDSPT---QT 60

Query: 78  IGGEMNLSLFKVTHSI-PTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKID 135
           +G  +  S F++   + P LSL+ ++  ++   +   I+   +  K D S     E K+D
Sbjct: 61  VGHPVYESHFELVKRVKPMLSLDNLFTCDEAVDWSIDIHGDIYVGKKDESAEIVAEWKMD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y       A+ RGDG +GEDV+     +  IPRVL       + +RGEV +  
Sbjct: 121 GLSLDVNYTYDTMELASTRGDGTTGEDVTPNAMVVEGIPRVLKTPRHGGVSIRGEVVVRL 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKG 253
            D+  +N ++ A G+K +ANPRN A+G LR+ +P  ITR   L F  + + +T       
Sbjct: 181 ADYNQINADLEAAGKKTFANPRNYAAGSLRQKDPR-ITRERKLVFVAYSVERTLGDPEAT 239

Query: 254 QYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYY----NEMKSIRSTLPYDIDGLVYKVDE 308
            Y+    ++  GF   + G R ++   G+ S +     E ++ RS+ P+++DG+V+KV +
Sbjct: 240 WYDDQAWLKENGFYTADTGKRLSHDQRGMTSGFPALIAECQAERSSYPFEVDGIVFKVVK 299

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + ++ LG  +R PRW  ++KF   +  TRL+ +D Q+GRTG LTP+AR+EP+++ G  I
Sbjct: 300 HTHRETLGYTSRFPRWGRAYKFPASKGETRLISVDRQVGRTGKLTPMARIEPIHVHGTTI 359

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +N T+HN   +K L+   K+  G         V + RAG+VIP +   I +  H   + +
Sbjct: 360 SNVTIHN---LKELEQH-KLFEGC-------YVEISRAGDVIPYLERRITD--HNGEKLY 406

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRC--TGGLACSAQQLERLKHFVSRDAFNIEGL 486
                CP C ++VV     KT +     R        C  +Q+  L +   R   NI+GL
Sbjct: 407 GEVEACPCCGTKVVVVHGKKTKENPEGSRTEYCPNTKCKDRQVAHLLYCTQRHVLNIKGL 466

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +   + +      +  P  +  L+        + E +     ++VT          
Sbjct: 467 GDELVMDLYNA--GVVDVTRPLSLLMLKHEDFLKIGQSERMAEKLAMAVT------IASA 518

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           N+ L R I +LGI       A  LA+   + +  +      IA  +     ++ +  +GD
Sbjct: 519 NLDLTRVITALGISGAADGTAERLAREIRTLEEIS------IATID----RMLEIDDIGD 568

Query: 607 IIAQAIVEFY 616
           + AQ+I EF+
Sbjct: 569 VTAQSIFEFF 578


>gi|148989161|ref|ZP_01820551.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73]
 gi|147925384|gb|EDK76462.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73]
          Length = 374

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 186/347 (53%), Gaps = 15/347 (4%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A+P+   ++ P    +++GG++     K +H  P
Sbjct: 15  YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 71

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+     +  E KIDG  I++ YEKG  V    R
Sbjct: 72  LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 126

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L +PE   I VRGE Y+ +  F  +N      G   
Sbjct: 127 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 182

Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           +ANPRNAA+G LR+L+ T +    N       + S      Q + L+ +  LGF VN   
Sbjct: 183 FANPRNAAAGTLRQLD-TAVVAKRNLATFLYQEASPSTRDSQEKGLKYLEQLGFVVNPKR 241

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
             A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF  
Sbjct: 242 ILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFPA 301

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI
Sbjct: 302 EEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI 348


>gi|291549033|emb|CBL25295.1| DNA ligase, NAD-dependent [Ruminococcus torques L2-14]
          Length = 652

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 183/659 (27%), Positives = 315/659 (47%), Gaps = 75/659 (11%)

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P   +G E+   L K  H  P LSL+K  ++E L++F+       QK         + 
Sbjct: 57  NSPTVNVGYEVLSELPKERHERPMLSLDKTKDVERLKEFLG-----GQKA-------LIS 104

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVR 188
            K+DG  + + Y+ G+ V A  RG+G  GE ++   +    +P    L IP   E++ +R
Sbjct: 105 WKLDGLTVVLTYQNGEIVKAVTRGNGVIGEVITNNAKVFKNVP----LKIPYQGELV-LR 159

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246
           GE  IS  DF  +N+E+  V  K Y NPRN  SG +R+LN  +IT  R + F+   L + 
Sbjct: 160 GEAVISYKDFEKINEEIEDVDAK-YKNPRNLCSGSVRQLN-NEITAKRNVRFYAFTLVRA 217

Query: 247 SEI-FAKGQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             + F   +   +Q +   GF V  N+ V +      +  +  E++   + +P D  GLV
Sbjct: 218 EGVDFQNSRKYQMQWLENQGFDVVENHEVTRDTIEEEVAWFAREIE--HNEVPSD--GLV 273

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
              D+ +  + LG  A+ PR   + K+A++  +T+LL+I+    RTG++ PVA  EPV +
Sbjct: 274 LVYDDIAYGQSLGTTAKFPRDSFAFKWADEIRNTKLLEIEWSPSRTGLINPVAVFEPVEL 333

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A++HN   ++ L           ++ VGD + V +A  +IP++ + +      
Sbjct: 334 EGTTVSRASVHNISIMEEL-----------ELGVGDEIQVYKANMIIPQIAENLTRSGVK 382

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D      P  CP+C       +  +T  L     CT    C A+ ++    FVSRDA NI
Sbjct: 383 D-----IPKVCPVCGGETKISMENETKTLY----CTNP-KCQAKHVKSFALFVSRDAMNI 432

Query: 484 EGLGKQQLD-FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           EGL +  L+ F F      F+     D+F L   +     +I  + GFG+ S   L  SI
Sbjct: 433 EGLSEATLEKFIFHGYVKDFT-----DLFHLDNYRD----EIMTMDGFGEKSFLKLQSSI 483

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K R  +L R ++ LGI  +G+  A+ + +   +  N +Q +         +   L+ + 
Sbjct: 484 EKARKTTLARLVYGLGIPGIGSANAKVICR---ALGNDSQRVLQA------EEAELVEIQ 534

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI- 661
            VG ++A++ V++++   +   +   L +            S +      V TG+++   
Sbjct: 535 GVGAVMAKSYVDYFKEEEH-QEIYKRLLDEVELEEEEVTEDSQKFAGVNFVITGSVEHFA 593

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R + +  + + G  V+  ++ KT+ +I  D  +  SK +KA+ LGV I++E+ FL +L
Sbjct: 594 NRAEVKAEIEKRGGKVTGSVTSKTNYLINNDVNSTSSKNKKARDLGVPIISEKDFLEML 652


>gi|302385528|ref|YP_003821350.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
 gi|302196156|gb|ADL03727.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
          Length = 672

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 189/716 (26%), Positives = 314/716 (43%), Gaps = 85/716 (11%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + ++ + + YY ++ P + D  YD L  +   +             N P   +G  + 
Sbjct: 12  LTERLNIYREQYYDHNAPSVSDEIYDRLFDKLKELEQQ----TGIHMANSPTQTVGYPVM 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
             L K  H IP LSLEK  + EDL  F          +  + +   L  K+DG  + + Y
Sbjct: 68  SKLEKTIHEIPLLSLEKTKSSEDLELF----------QGKHQVMLML--KLDGLTVKLTY 115

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVYISKNDFLAL 201
           E G+ V  A RGDG  GE ++   R I  IP    + IP    + V GE +I   DF  L
Sbjct: 116 ENGRLVEVATRGDGDEGEIITHNTRGITGIP----VQIPYSGRLVVTGEAFIRPVDFEIL 171

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG-LGKTSEIFAKGQYEMLQ 259
             +++    +PY N RN A+G +R L+      R + F   G L    ++  K Q   L 
Sbjct: 172 KIKLLDSTGRPYKNGRNLAAGSVRLLDAVACRDRKVVFMPFGVLEGYPDMTTKSQ--KLS 229

Query: 260 KMRCLGFPVNNGV--RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           ++  LGF +   +  ++  T   I     +++         IDG+V   ++ +  K  G 
Sbjct: 230 QLPALGFSICKFLVSKRPLTLAEIEQAIQQLQQFAKANGIPIDGIVMSYNDIAFSKSCGR 289

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
                +  ++ KF ++   +RLL I+    R+G + PVA  + V I G  ++ A+LHN  
Sbjct: 290 TGHHYKDGMAFKFEDELYESRLLHIEWNTTRSGEIAPVAVFDTVEIDGCEVSRASLHNLT 349

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           +I+ L           ++  G+R+LV +   +IP + D +  +R         P  CP C
Sbjct: 350 FIESL-----------ELMPGNRILVSKRNMIIPHIEDNL--DRGGFLLGSVIPHECPCC 396

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGL-----ACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
             +  R    +   +    R T  L      C  ++L R  HFVS+ A +I GL +  L+
Sbjct: 397 -GQSTRIHVGEERSVEGEVRTTKTLFCDNPDCETRRLRRFVHFVSQKAMDIAGLSEATLE 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      I    DI+ L R +     +I  + GFG+ S  NL+D+I + RN + ER
Sbjct: 456 KLIGRG----WIHTYMDIYRLDRHR----GEIVRMDGFGEKSWQNLWDAIQQSRNTTFER 507

Query: 553 FIFSLGIRHVGAEIARSLAKYY---LS------YQ--NFAQ--EINNIIAHNNDDWLSLI 599
           ++ ++ I  +G   +++L K +   LS      YQ  +F Q  +    + +N  DW SL 
Sbjct: 508 YVIAMDIPMIGNSASKALRKEFNGSLSDFEMAVYQGYDFTQLPDFGETLHNNIRDWFSL- 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
                     + I  + +  + +C +E  L E  PS      +  S      +V TG ++
Sbjct: 567 ---------EENIYSWDELQKLLC-IEKKLAETVPS------DEDSAFVGCTIVVTGKVE 610

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
              R    + +  LGA     +S KTD ++ G+  G KL KA++LG+ ++   +F 
Sbjct: 611 PYTREGINDLIESLGAHPGNSVSSKTDYLVCGEKAGGKLMKARELGIPVLTPAEFF 666


>gi|281424041|ref|ZP_06254954.1| putative DNA ligase [Prevotella oris F0302]
 gi|281401824|gb|EFB32655.1| putative DNA ligase [Prevotella oris F0302]
          Length = 665

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 192/715 (26%), Positives = 319/715 (44%), Gaps = 102/715 (14%)

Query: 33  DCYYQYSKPIILDSEYDAL----KRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           D YY     ++ D E+DA+    K+        FPD         P N++  E N++  K
Sbjct: 21  DAYYNGQGELMTDYEWDAMFDQVKQLETETGQKFPD--------SPTNRVS-EDNITGQK 71

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
             H  P LSL K     +L K+     I+  W              K+DG  + + ++ G
Sbjct: 72  EEHEFPALSLAKTKQPTELAKWAEGRPIWLSW--------------KLDGLTLVVTFDNG 117

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
           K      RG+GH G +++    AI  IP+   +     + VRGE  IS  DF   N E  
Sbjct: 118 KLTKVVTRGNGHIGTNITHLANAIQGIPQ--EIKSKGHVVVRGECVISYADFEQFNIE-- 173

Query: 207 AVGRKPYANPRNAASGILRRLNPTDI-TRYLNFF----------VHGLGKTSEIFAKGQY 255
               + YANPRN ASG L   +  ++  R+LN+           ++  G   +   +   
Sbjct: 174 --SDEEYANPRNLASGSLTLKDVNEVRQRHLNWIPFTLVYAEEPINSWGARMDWLEQNGM 231

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + +++ + +  P    + Q      +++ + E K      PY +DGLV   D+ S   Q 
Sbjct: 232 KAVEREK-IEVPTLQNIEQ------VIAKWTE-KVTGKVNPYPVDGLVITYDDTSF-AQT 282

Query: 316 GERA--RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           G      + R   + K+ ++ A T L  I+       I +PVA   PV + G  +  A+L
Sbjct: 283 GSVTGHHATRAGYAFKWQDESADTVLDHIEWSCAANTI-SPVAVFTPVELEGTTVKRASL 341

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
            N    + L   G+          G ++ V +A ++IPKV  I VNE+  D      P  
Sbjct: 342 CNISECERLGIGGQ----------GTKLSVIKANKIIPKV--IRVNEKIGD---LKIPET 386

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S+    +   T        CT G  C A+QL +   FVS++  NI+G+ +Q +  
Sbjct: 387 CPVCGSKT--QITMSTASETKTLHCTNG-KCPAKQLRKFARFVSKEGVNIDGMSEQTVAK 443

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F         ++  AD++ L+        ++  + GFG+ SV NL  +I K R++    F
Sbjct: 444 FIN----LGWVKEYADLYQLKNH----ALELSFMEGFGEKSVRNLLHAIEKARDVEAHHF 495

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-----VGDII 608
           +++L I   G ++ + L   Y  +     EI +I +  +D  +  +  P      +G   
Sbjct: 496 LYALSIPLCGQDVCKRLLSAYPLH-----EIIDIASGKSDKTVPGVEAPFSLIAGIGPEK 550

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQ-RHK 665
           +  IV+++ +  N   VE LL++V  S    E N +S    K L F  TG +   + R++
Sbjct: 551 SNQIVKWFHDEENRMMVEKLLRQVHIS---QENNEASGENCKGLTFVVTGDVNHYKNRNE 607

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + Y+   G  V+  +S+ T+ +I  D  +  SK +KAQQLG+ I++EE+F+ L 
Sbjct: 608 LKAYIESQGGKVTGSVSKSTNYLINNDVTSASSKNQKAQQLGIPIISEEEFINLF 662


>gi|299142918|ref|ZP_07036045.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella
           oris C735]
 gi|298575647|gb|EFI47526.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella
           oris C735]
          Length = 657

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 190/714 (26%), Positives = 317/714 (44%), Gaps = 100/714 (14%)

Query: 33  DCYYQYSKPIILDSEYDAL----KRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           D YY     ++ D E+DA+    K+        FPD         P N++  E N++  K
Sbjct: 13  DAYYNGQGELMTDYEWDAMFDQVKQLETETGQKFPD--------SPTNRVS-EDNITGQK 63

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
             H  P LSL K     +L K+     I+  W              K+DG  + + ++ G
Sbjct: 64  EEHEFPALSLAKTKQPTELAKWAEGRPIWLSW--------------KLDGLTLVVTFDNG 109

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
           K      RG+GH G +++    AI  IP+   +     + VRGE  IS  DF   N E  
Sbjct: 110 KLTKVVTRGNGHIGTNITHLANAIQGIPQ--EIKSKGHVVVRGECVISYADFEQFNIE-- 165

Query: 207 AVGRKPYANPRNAASGILRRLNPTDI-TRYLNFF----------VHGLGKTSEIFAKGQY 255
               + YANPRN ASG L   +  ++  R+LN+           ++  G   +   +   
Sbjct: 166 --SDEEYANPRNLASGSLTLKDVNEVRQRHLNWIPFTLVYAEEPINSWGARMDWLEQNGM 223

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + +++ + +  P    + Q      +++ + E K      PY +DGLV   D+ +   Q 
Sbjct: 224 KAVEREK-IEVPTLQNIEQ------VIAKWTE-KVTGKVNPYPVDGLVITYDDTTF-AQT 274

Query: 316 GERA--RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           G      + R   + K+ ++ A T L  I+       I +PVA   PV + G  +  A+L
Sbjct: 275 GSVTGHHATRAGYAFKWQDESADTVLDHIEWSCAANTI-SPVAVFTPVELEGTTVKRASL 333

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
            N    + L   G+          G ++ V +A ++IPKV  I VNE+  D      P  
Sbjct: 334 CNISECERLGIGGQ----------GTKLSVIKANKIIPKV--IRVNEKIGD---LKIPEA 378

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S+    +   T        CT G  C A+QL +   FVS++  NI+G+ +Q +  
Sbjct: 379 CPVCGSKT--QITMSTASETKTLHCTNG-KCPAKQLRKFARFVSKEGVNIDGMSEQTVAK 435

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F         ++  AD++ L+        ++  + GFG  SV NL  +I K R++    F
Sbjct: 436 FIN----LGWVKEYADLYQLKNH----ALELSFMEGFGKKSVRNLLHAIEKARDVEAHHF 487

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-----VGDII 608
           +++L I   G ++ + L   Y  Y     EI +I +  +D  +  +  P      +G   
Sbjct: 488 LYALSIPLCGQDVCKRLLSAYPLY-----EIIDIASGKSDKTVPGVEAPFSLIAGIGPEK 542

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQ-RHKA 666
           +  IV+++ +  N   VE LL++V   I +  K  S E  +    V TG +   + R++ 
Sbjct: 543 SNQIVKWFHDEENRMMVEKLLRQV--HISQENKEASGENCKGLTFVVTGDVNHYKNRNEL 600

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + Y+   G  V+  +S+ T+ +I  D  +  SK +KAQQLG+ I++EE+F+ L 
Sbjct: 601 KAYIESQGGKVTGSVSKSTNYLINNDVTSASSKNQKAQQLGIPIISEEEFINLF 654


>gi|261880335|ref|ZP_06006762.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333026|gb|EFA43812.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 665

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 194/727 (26%), Positives = 326/727 (44%), Gaps = 101/727 (13%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L ++++   D YY     ++ D E+DAL  +   I            P+ P N++
Sbjct: 5   QRMQELVEQLNRASDAYYNGRDELMSDYEWDALFDKLKLIEQETGKTL----PDSPTNRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEPKIDG 136
             E N++  K  H   TLSL K   ++DL K+ T   I+  W              K+DG
Sbjct: 61  S-EDNITGQKEEHEFATLSLAKTKLVDDLVKWATGRPIWLSW--------------KLDG 105

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y+ GK      RG+GH G +++   +AI  IP+ +  N   ++ +RGE  IS  
Sbjct: 106 LTLVVTYDNGKLTKVVTRGNGHIGTNITHLAKAIAGIPQKIK-NKGHVV-IRGEAIISYE 163

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT----RYLNF-FVHGLGKTSEIFA 251
           DF   N E  A     YANPRN ASG L   +P +++    R++ F  VH     S   +
Sbjct: 164 DFEQFNMENDA----EYANPRNLASGSLTLKDPNEVSQRNIRWIPFTLVHSDEDISSWGS 219

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL---PYDIDGLVYKVDE 308
           +  +     M+C    V++   +  T   I    ++  ++R T    PY +DGLV   D+
Sbjct: 220 RMDFLRENGMQC----VDHECIEQPTLENIQKAIDQW-TLRVTNRENPYPVDGLVIVYDD 274

Query: 309 F---SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
               S     G  A   R   + K+ ++ A T L +I+     + I +PVA   PV + G
Sbjct: 275 TAYASTGSVTGHHAT--RAGYAFKWQDESADTELEEIEWSCAASTI-SPVAVFRPVELEG 331

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  A+L N    + L   GK          G ++ V +A ++IPKV+ +     +   
Sbjct: 332 TTVKRASLCNISECERLGIGGK----------GTKLAVIKANKIIPKVIKV-----YEKV 376

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P  CP+C+S     ++P +G       CT    C A++L++ + F+S+D  +++G
Sbjct: 377 GELETPHECPVCKSPTEIIVSPSSGTRTL--HCTNE-TCPAKELKKFRRFLSKDGMDVDG 433

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           + +Q +  F         +   ADI+ L         +I  + GFG+ S  N+  SI K 
Sbjct: 434 ISEQTISKFIN----LGWVAEYADIYHLPAH----AGQIARLEGFGEKSAANMVSSIEKS 485

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND---------DWL 596
           R +   RF+++L I  VG +    L    LS       IN +               D L
Sbjct: 486 RKVEARRFLYALSIPLVGKDACNRL----LSTYALTDLINMVTGRGKSTDLFTPAPGDLL 541

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK----- 651
           ++I  P +G   + ++V ++ + RN   V+ LL+EV        + VS E   KK     
Sbjct: 542 AMI--PGIGPETSASLVNWFSDVRNQTIVDRLLQEVVI------EQVSIEPTGKKCESLT 593

Query: 652 LVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKI 708
            V TG +   + R++ + Y+   G  V+  +S+ T  +I  D  +   K +KAQQL + I
Sbjct: 594 FVVTGDVHHYKNRNELKAYIESQGGKVTGSVSKSTSFLINNDVTSTSGKNQKAQQLHIPI 653

Query: 709 MNEEQFL 715
           ++E++F+
Sbjct: 654 ISEDEFI 660


>gi|111226523|ref|XP_001134548.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
 gi|90970627|gb|EAS66865.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
          Length = 843

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 200/804 (24%), Positives = 362/804 (45%), Gaps = 148/804 (18%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  +I+ ++D YY  SK  I D EYD L +R + +   F     +     P++       
Sbjct: 71  LRNKINRYNDLYYNKSKSEISDFEYDKLFKRLEILEKKFNQQTITNQVGAPISDYSNNRG 130

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-------IFFTLEPKIDG 136
           L   K  H    LSL+  ++ +D+  F  +I +F  KK  +        I ++LE K DG
Sbjct: 131 L---KFRHKSRMLSLQNTYSKDDIIAFKNKIEKFLLKKQTSQQQQPQQQIEYSLELKYDG 187

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSA-CIRAIPTIPRVLSL--NIPEII-------- 185
             I++ YE  K      RG+G  GED++   ++ IP++  +L+L  N+   I        
Sbjct: 188 IGISLVYENNKLKRVLTRGNGEIGEDITTNALQFIPSLKNLLTLPSNLTVFILFLILKYK 247

Query: 186 --EVRGEVYISKNDFLALND-EMIAVGRKPYANPRNAASGILRRLNPTDITRYLN----- 237
             E+RGEV ++K+    +N  ++    +  Y N RN  SGILR+    D    LN     
Sbjct: 248 DFEIRGEVVLNKSYLKIINKLKLDNNDQHQYKNTRNIVSGILRKSIEEDANDSLNIEPIL 307

Query: 238 ---------FFVHGLGKTSEIF----------------------------AKGQYEMLQK 260
                    FF +    T+                                  Q + L+ 
Sbjct: 308 LLNEQMKFDFFPYFFIPTNNNNNNINNGENENENDNEKENDNEMIIDDERCNTQSKNLKL 367

Query: 261 MRCLGFPVNNGVRQANTFH-GIVSYYNEMKSI-----------RSTLPYDIDGLVYKVDE 308
              +GF ++NG     T   G     N++K+I           R    +DIDG+V KV++
Sbjct: 368 FEKMGFQIDNGSNTVVTLSTGGGGNNNDIKNIEEFIKEWELKKRENHNWDIDGIVIKVND 427

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++Q+ LG+  RSPRW  ++KF  K   + + DI +Q+G++G +TPVA +EP+ + G  I
Sbjct: 428 INIQRILGDINRSPRWAFAYKFGAKSEISTIKDIVLQVGKSGRITPVALVEPIQVHGVTI 487

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATL+N  YI  L           +I++G +VL++RAG+VIPK++  + +  +      
Sbjct: 488 SRATLNNLSYINKL-----------NIKIGSKVLIERAGDVIPKIITNLDDNINNTNTNT 536

Query: 429 SFPSF--------CP-----ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           +  +         C      +C   +  +L  + G     + C     C  Q ++++  F
Sbjct: 537 NTNNTNNIESLFKCNENGNILCPCNLKSELVNRVG--YVDYFCVAE-NCPNQLVQQISWF 593

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           V + A NI+G+GK Q+    +++     I    D++ L + ++    K+ ++ GF    V
Sbjct: 594 VDKKAMNIQGVGKSQIQVLLENQ----LIEDFGDLYELYQFKE----KLLSLKGFSHTKV 645

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL +SI   ++  L   + ++GI  +G+  ++ L++ +       Q ++N+I  N+   
Sbjct: 646 NNLLESIEDSKSRGLASLLCAIGIPGIGSSNSKILSEKF-------QSLDNLI--NSPSI 696

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIG-------------- 637
            S+     +G   +++I  F+ NP +    + L     K  S ++               
Sbjct: 697 ESIELQSGLGRQTSESIFNFF-NPLDQFEKQYLDYLIFKFKSNNLKLTHNNNNDNNEEIG 755

Query: 638 -----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT-QLGAVVSAILSRKTDIIIVG 691
                 + +N +S + NK +V TG  +   R   ++++  +  A V + ++  T I+++G
Sbjct: 756 NNNNNNNNENNNSFLSNKYIVITGKFKLGDRDFVKDFIQRKFNAKVQSSINSFTQILLIG 815

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQF 714
           + P  +KL KA +LG++I +E + 
Sbjct: 816 EKPAIAKLNKANELGIQIKSENEL 839


>gi|281307118|pdb|3JSL|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
           Dependent Dna Ligase From Staphylococcus Aureus
 gi|281307119|pdb|3JSL|B Chain B, Crystal Structure Of The Adenylation Domain Of Nad+-
           Dependent Dna Ligase From Staphylococcus Aureus
 gi|281307120|pdb|3JSN|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
           Dependent Dna Ligase From Staphylococcus Aureus
          Length = 318

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 114/316 (36%), Positives = 170/316 (53%), Gaps = 14/316 (4%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    +    P  ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVD---SPTVRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G  
Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296

Query: 319 ARSPRWMISHKFAEKQ 334
            +SPRW I++KF  ++
Sbjct: 297 QKSPRWAIAYKFPAEE 312


>gi|315924259|ref|ZP_07920483.1| NAD-dependent DNA ligase LigA [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622420|gb|EFV02377.1| NAD-dependent DNA ligase LigA [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 654

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 191/721 (26%), Positives = 329/721 (45%), Gaps = 93/721 (12%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED- 70
           LSI Q   +++ L  +I+   + YY   + ++ + E+DAL          F  L R E  
Sbjct: 6   LSINQ---QMADLIGKINAASEAYYGGREELMSNYEWDAL----------FDALIRLEKK 52

Query: 71  -----PNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
                P+ P  ++G      S  KV H  P LSL K   + DL K+           D  
Sbjct: 53  AGYALPDSPTQRVGTSSSEASGEKVAHEYPMLSLAKTKTVADLVKW----------ADGR 102

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            ++ +L  K+DG  +   Y++G+      RG+G  G D++    AI  +P  + ++ P  
Sbjct: 103 DVWLSL--KLDGLTLVATYDEGRLNRLVTRGNGSVGTDITHLASAIDGVP--IQISEPGH 158

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFV 240
           + +RGE  I+  DF    +  +    + YANPRN ASG L   +  ++ R    ++ F +
Sbjct: 159 LVIRGEALITYKDF----ETFLLESEETYANPRNLASGSLSLKDIDEVRRRHLQWIPFTL 214

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
             L +  E+ + G    +  +  LGF PV     QA+T    ++ ++E  S +  +PY +
Sbjct: 215 VHLDR--EMISWGA--RMDYLASLGFHPVERERLQADTLGDGIARWSEQIS-KGAIPYPV 269

Query: 300 DGLVYKVDEFSLQKQLGERA--RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DGLV   D+     Q G      + R  ++ K+ +  A + L  I+     + I TPVA 
Sbjct: 270 DGLVMTYDDTDY-AQTGSVTGHHATRAGLAFKWQDTSADSILTGIEWSCAASTI-TPVAI 327

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
            EPV + G ++  A+LHN    + L   G           G +V V +A ++IPKV+   
Sbjct: 328 FEPVALEGTIVKRASLHNISECRRLGIGG----------AGTKVTVIKANKIIPKVI--- 374

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
                     F  P  CP+C +     ++    + +    C+    C+A+ L++   FVS
Sbjct: 375 ---AAKGEGNFVIPEACPVCSAPTAVAVSSSGAETL---HCSNP-ECAAKHLQKFNRFVS 427

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R   +I+GL  Q ++ F    +  F I+  +DI+ L +        I  + GFG+ SV N
Sbjct: 428 RYGMDIDGLSIQTMNKFI---NQGF-IKSFSDIYQLAKYFDA----IREMDGFGEKSVAN 479

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +I K R +  E  +F+L I  +G +  + L    ++       +N + A+ + D   
Sbjct: 480 LAAAIEKSRRVKPENLLFALCIPMIGVDAGKRL----INAIGLEGVLNRLNANEDFD--- 532

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
              +  +G   + +++ +Y + +N   +  LL E+   +   ++N S   E    V TG 
Sbjct: 533 --DIEGIGPEKSDSLLAWYADEKNASDLTRLLAELQVDMEAKQRN-SGRCEGLTFVITGK 589

Query: 658 LQKIQRHKA-QEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQF 714
           +Q  Q   A + YV   G  VS  +S+KTD ++  D  +  +K  +A+ LGV I++E +F
Sbjct: 590 VQHYQNRDAFKAYVESQGGHVSGSVSKKTDYLVNNDVESTSAKNRRARDLGVPIISEAEF 649

Query: 715 L 715
           +
Sbjct: 650 V 650


>gi|320527941|ref|ZP_08029107.1| NAD-dependent DNA ligase OB-fold domain protein [Solobacterium
           moorei F0204]
 gi|320131567|gb|EFW24131.1| NAD-dependent DNA ligase OB-fold domain protein [Solobacterium
           moorei F0204]
          Length = 658

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 194/706 (27%), Positives = 324/706 (45%), Gaps = 97/706 (13%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSL 86
           D YY      + D E+DAL          F  L + E+  G      P  K+  +     
Sbjct: 21  DAYYDGKAEQMTDYEWDAL----------FDRLKKLEEETGVVLEDSPTMKVSSDHTAGQ 70

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
            K  H    LSL K    E++ K+     I+  W              K+DG  + + Y+
Sbjct: 71  -KEAHEFLALSLAKTKKPEEVEKWAEGKPIWISW--------------KLDGLTLVVTYD 115

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            GK      RGDGH G +++    AI  IP+ +S     +I  RGE  IS  DF    ++
Sbjct: 116 NGKLSKVVTRGDGHIGTNITHLSSAIHGIPQTISEKGHLVI--RGEAVISYEDF----NQ 169

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQYEMLQKMR 262
            +    + YANPRN ASG L   +  ++  R +++    L  T E I + G+   +  M 
Sbjct: 170 FVMESGEDYANPRNLASGSLTLKDIEEVKKRQIHWIPFTLVYTEEDITSWGK--RMDYME 227

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNE-----MKSIRSTL-PYDIDGLV--YKVDEFSLQKQ 314
            LGF V   V +    H  ++  N+      K +   + PY +DGLV  Y   E++    
Sbjct: 228 KLGFQV---VERECVEHPTLANINKEIEQWTKKVTDAINPYPVDGLVVVYDDTEYASGGS 284

Query: 315 L-GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           + G  A   R   + K+ ++   ++L  I+     + I TPVA  EPV I G  +  A+L
Sbjct: 285 VTGHHA--TRAGFAFKWQDESVLSKLEYIEWSCAASTI-TPVAVFEPVEIEGTTVKRASL 341

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
            N    K L              VG  V V +A ++IPKV+ +    +H +   F  P  
Sbjct: 342 CNISECKRLGIGD----------VGSEVEVIKANKIIPKVISV----KHAEGS-FHIPET 386

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S+ + D++ +  + +   +CT   +C A++L++   FVS+   +I+G+ +Q L  
Sbjct: 387 CPVCHSKTIVDMSERGTETL---KCTNP-SCPAKKLKKFNRFVSKAGMDIDGISEQTLAR 442

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F         I    DIF L +  +    +I ++ GFG+ S TN+ +SI++ R I   + 
Sbjct: 443 FINE----GWITKYGDIFRLSKHHE----EITDLEGFGEKSATNIMESIDRAREIDESKL 494

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++L I  +G ++A+ L    LS   F + ++  IA N +       +  +G   + A V
Sbjct: 495 VYALNIPLIGKDVAKRL----LSVYPFRELVS--IARNTETTEVFSSIDGIGPEKSNAFV 548

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQK-IQRHKAQEYVT 671
            + ++P NI  +E LL E+  ++ R    +S  + E    V TG +     R++ + Y+ 
Sbjct: 549 SWCKDPENISQLEDLLDEI--TLQRTNTVLSGNLCEGLTFVVTGDVHHYANRNELKAYIE 606

Query: 672 QLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
             G  V+  +S+ T+ +I  D  +  SK  KA+QL + I++EE+F+
Sbjct: 607 SQGGKVTGSVSKSTNYLINNDVTSSSSKNTKAKQLNIPILSEEEFI 652


>gi|260591596|ref|ZP_05857054.1| putative DNA ligase [Prevotella veroralis F0319]
 gi|260536396|gb|EEX19013.1| putative DNA ligase [Prevotella veroralis F0319]
          Length = 676

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 190/720 (26%), Positives = 323/720 (44%), Gaps = 95/720 (13%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PNG 73
           E+ SL ++++   D YY   + I+ + E+DA          AF  L + E+      P+ 
Sbjct: 4   EIQSLVEQLNAASDAYYNGREEIMTNYEWDA----------AFDRLKKLEEETGIILPDS 53

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLE 131
           P   +  + NL+  K  H  P LSL K   + +L K+     I+  W             
Sbjct: 54  PTQNVSAD-NLTGQKEEHEFPALSLAKTKKVAELAKWAENRPIWLSW------------- 99

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y+ GK      RG+GH G +++   +AI  I + +      +I  RGE 
Sbjct: 100 -KLDGLTLVVTYDNGKLTKVVTRGNGHIGTNITHLSKAIDGILQAIPYKGHLVI--RGEA 156

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT----RYLNFFVHGLGKTS 247
            IS  DF   N E      + YANPRN ASG L   N  ++     R++ F +  + +  
Sbjct: 157 VISYPDFEQFNME----SEEEYANPRNLASGSLTLKNINEVKERHIRWIPFTL--VYEEE 210

Query: 248 EIFAKGQYEMLQKMRCLGF-PVNNGVRQANT---FHGIVSYYNEMKSIRST--LPYDIDG 301
           EI + G    +  +   GF PV+  + +  T      ++  + E  + +S+   PY +DG
Sbjct: 211 EIISWGN--RMAWLEQQGFKPVDRELIEQPTEANIQAVIDCWTERVTGKSSSPFPYPVDG 268

Query: 302 LVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           LV   D+ +        G  A   R   + K+ ++ A T L  I+     + I +PVA  
Sbjct: 269 LVITYDDTAYAATGSVTGHHAT--RAGYAFKWQDESAETELEYIEWSCAASTI-SPVAVF 325

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV + G  +  A+L N    + L    K          G ++ V +A ++IPKV++++ 
Sbjct: 326 KPVELEGTTVKRASLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVV- 374

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            ER      F  P  CP+CQS      +  +G       CT    C A+QL++   FVS+
Sbjct: 375 -ER---LGVFHIPEVCPVCQSATEVTESESSG--TKTLHCTN-THCPAKQLKKFGRFVSK 427

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +  NI+GL +Q +  F         +R  AD+F L        +++  + GFGD SV+ L
Sbjct: 428 EGINIDGLSEQTIQKFIN----LGWVREYADLFHLNNH----ASELRTMDGFGDKSVSKL 479

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I K RN+   R +F+L I  +G ++   L    LS    A   +       +D  + 
Sbjct: 480 LTAIEKARNVEAHRLLFALNIPLIGRDVCNRL----LSAYQIADLFHTATEATTEDVFAT 535

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           I    +G   + + V + ++  N   ++ LL E++ S        +S  E    V TG +
Sbjct: 536 I--AGIGPEKSASFVRWMKDKDNYSMMQQLLVELNISQSSSAPTGNS-CEGLTFVITGDV 592

Query: 659 QKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
              + R++ + Y+   G  V+  +S+ T  +I  D  +   K +KA++L + I++EE+F+
Sbjct: 593 HHYKNRNELKAYIENQGGKVTGSVSKSTSFLINNDIESSSGKNKKAKELSIPIISEEEFI 652


>gi|218509214|ref|ZP_03507092.1| NAD-dependent DNA ligase LigA [Rhizobium etli Brasil 5]
          Length = 202

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/205 (45%), Positives = 135/205 (65%), Gaps = 3/205 (1%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +S   +EI++HD  Y    +  I D++YDALKRR DA+   FP+L R + P+     +G 
Sbjct: 1   MSGWPKEIAHHDALYQGKDQREISDADYDALKRRNDALEVRFPELIREDSPS---RHVGA 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
             +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI FT EPKIDG  ++
Sbjct: 58  APSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAFTAEPKIDGLSMS 117

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+RGEVY++K+DFLA
Sbjct: 118 IRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIRGEVYMAKSDFLA 177

Query: 201 LNDEMIAVGRKPYANPRNAASGILR 225
           LN +M A G++ Y NPRN A+G LR
Sbjct: 178 LNRQMEAEGKQTYVNPRNTAAGSLR 202


>gi|302345294|ref|YP_003813647.1| DNA ligase (NAD+) [Prevotella melaninogenica ATCC 25845]
 gi|302149440|gb|ADK95702.1| DNA ligase (NAD+) [Prevotella melaninogenica ATCC 25845]
          Length = 673

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 191/722 (26%), Positives = 320/722 (44%), Gaps = 87/722 (12%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           KE+ SL  +++   D YY     ++ D E+DA          AF  L + E+      P+
Sbjct: 3   KEIQSLVNQLNAASDAYYNGRDELMTDYEWDA----------AFDKLKKLEEETGIILPD 52

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +  + N++  K  H  P LSL K   +EDL K+           ++  I+ +   
Sbjct: 53  SPTQNVSAD-NVAGKKEEHEFPALSLAKTKKVEDLAKW----------AENKPIWLSW-- 99

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y+ GK      RG+GH G +++    AI  I + +      +I  RGE  
Sbjct: 100 KLDGLTLVVTYDNGKLTKVVTRGNGHIGTNITHLSTAIDGILQTIPYKGHLVI--RGEAV 157

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251
           IS  DF   N E      + YANPRN ASG L   +  ++  R+L +    L  T E   
Sbjct: 158 ISYPDFEQFNME----AEEEYANPRNLASGSLTLKDINEVKARHLRWIPFTLVYTEEEIN 213

Query: 252 K--GQYEMLQKMRCLGFPVNNG--VRQ--ANTFHGIVSYYNEMKS--IRSTLPYDIDGLV 303
              G+ E L+     GF V +   + Q   N    ++ ++ E  +    S  PY +DGLV
Sbjct: 214 SWGGRMEWLEHQ---GFRVVDRELIEQPTVNNIEAVIHHWTERVTGVSSSPFPYPVDGLV 270

Query: 304 YKVDEFSLQKQLGERA--RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
              ++ ++    G      + R   + K+ ++ A T L  I+     + I +PVA   P+
Sbjct: 271 ISYED-TVYAATGSVTGHHATRAGYAFKWQDESAETELDYIEWSCAASTI-SPVAVFRPI 328

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  A+L N    + L    K          G ++ V +A ++IPKV+++I    
Sbjct: 329 ELEGTTVKRASLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVI---- 374

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                 F  P  CP+C S      +  +G       CT    C A+QL++   FVS++  
Sbjct: 375 -ESVGTFHIPETCPVCHSATEVSESEVSGTRTL--HCTN-THCPAKQLKKFGRFVSKEGV 430

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+GL +Q +  F         +R  AD+F L        T++  + GFG+ SVT L  +
Sbjct: 431 NIDGLSEQTVQKFIN----LGWVREYADLFHLTEH----ATELRTMEGFGNKSVTKLLAA 482

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I K RN+   R +F+L I  VG ++   L    LS     + I   I    +D  S I  
Sbjct: 483 IEKARNVEARRLLFALNIPLVGQDVCNRL----LSAYPLEELIKTAIESAAEDVFSTI-- 536

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G   + + V + ++  N   ++ LL E++ S         S  +    V TG +   
Sbjct: 537 AGIGPEKSASFVRWMKDTDNQSMLQHLLAELNVSQPSSAPTGDS-CQGLTFVVTGDVHHY 595

Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R++ + Y+   G  V+  +S+ T+ +I  D  +   K +KA++L + I++E++F+   
Sbjct: 596 KNRNELKAYIESQGGKVTGSVSKSTNYLINNDVESTSGKNQKAKELSIPIISEDEFIARF 655

Query: 719 QQ 720
            Q
Sbjct: 656 AQ 657


>gi|289679598|ref|ZP_06500488.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           FF5]
          Length = 245

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/232 (40%), Positives = 147/232 (63%), Gaps = 4/232 (1%)

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN 180
           + + + ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP ++    
Sbjct: 14  EGSKVQYSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKG 73

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238
            P+++EVRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+ + IT  R L F
Sbjct: 74  WPDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEF 132

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             +GLG+TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+
Sbjct: 133 CCYGLGQTSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYE 192

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
           IDG+V+KV+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG
Sbjct: 193 IDGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTG 244


>gi|317502616|ref|ZP_07960737.1| NAD-dependent DNA ligase LigA [Prevotella salivae DSM 15606]
 gi|315666297|gb|EFV05843.1| NAD-dependent DNA ligase LigA [Prevotella salivae DSM 15606]
          Length = 665

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 192/709 (27%), Positives = 326/709 (45%), Gaps = 96/709 (13%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
           + YY      + D E+DAL    D + H   +  + + P+ P N++  E N+   K  H 
Sbjct: 21  NAYYNGQGEQMSDYEWDAL---FDEVKHLEKETGQ-QFPDSPTNRVS-EDNIIGKKEEHE 75

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
            P LSL K     +L K+    +  W           L  K+DG  + + +  GK     
Sbjct: 76  FPALSLAKTKQPVELAKWAEE-HPIW-----------LSWKLDGLTLVVTFNNGKLTKVV 123

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            RG+GH G +++    AI  IP+ +  N   ++ VRGE  IS  DF   N E      + 
Sbjct: 124 TRGNGHIGTNITHLATAIQGIPQEIK-NKGHVV-VRGECVISYADFEQFNIE----SEEE 177

Query: 213 YANPRNAASGILRRLNPTDITR-----------YLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           YANPRN ASG L   +  ++ +           Y +  +   GK  +   K   + +++ 
Sbjct: 178 YANPRNLASGSLTLKDINEVKQRHLVWIPFTLVYTDEVITSWGKRMDWLEKNGMKAVERE 237

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-- 319
             +  P    + Q      +++ + E  + +   PY +DGLV   D+ +   Q G     
Sbjct: 238 E-IEHPTLQNIEQ------VIAKWTEKVTGKEN-PYPVDGLVITYDDTAF-AQTGSVTGH 288

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
            + R  ++ K+ ++ A T L  ++       I +PVA   PV++ G  +  A+L N    
Sbjct: 289 HATRAGLAFKWQDESADTVLDHVEWSCAANTI-SPVAVFSPVDLEGTSVKRASLCNISEC 347

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ- 438
           + L   G+          G ++ V +A ++IPKV+ +I  E+  D      P  CP+C  
Sbjct: 348 ERLGIGGQ----------GTKLSVIKANKIIPKVIRVI--EKVGD---LDIPCSCPVCNA 392

Query: 439 -SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            +R+      +T  L     CT    C A+QL +   FVS++  NI+G+ +Q +  F   
Sbjct: 393 PTRITISSASETKTL----HCTNP-KCPAKQLRKFARFVSKEGVNIDGMSEQTVAKFIN- 446

Query: 498 EDPAFS-IRIPADIFTLQRRQ-QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
               F  ++  AD++ L+    Q S+T      GFG+ SV NL  SI K R++    F++
Sbjct: 447 ----FGWVKTYADLYKLKDHAIQLSSTD-----GFGEKSVRNLLRSIEKARDVEAHHFLY 497

Query: 556 SLGIRHVGAEIARSLAKYYLSYQN---FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           +L I   G ++ + L   Y S Q+    A   +  I   +D   SLI    +G   +  +
Sbjct: 498 ALSIPLCGQDVCKRLLSAY-SLQDIITIASGKSENIVPASDSPFSLI--AGIGPEKSNQV 554

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQ-RHKAQE 668
           V ++ +  N+  VE LL++V  S    ++N ++E ++ K    V TG +   + R++ + 
Sbjct: 555 VTWFHDEENLAMVEELLQQVRVS----QENTAAEGDSCKGLTFVVTGDVTHYKNRNELKA 610

Query: 669 YVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
           Y+   G  V+  +S+ TD +I  D  +  SK +KAQQLG+ I++EE+F+
Sbjct: 611 YIESQGGKVTGSVSKSTDYLINNDVASQSSKNQKAQQLGIPIISEEEFI 659


>gi|153217072|ref|ZP_01950836.1| DNA ligase [Vibrio cholerae 1587]
 gi|124113902|gb|EAY32722.1| DNA ligase [Vibrio cholerae 1587]
          Length = 330

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 114/332 (34%), Positives = 184/332 (55%), Gaps = 12/332 (3%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L + +  H   YY    P I D+EYD L R    +  A P+L  S+ P+    ++
Sbjct: 6   QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK+DG  
Sbjct: 63  GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHST--FCCEPKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           +++ YE G    AA RGDG +GE+++  +R I +IP R+   + P  +EVRGEV++ K  
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253
           F ALN   +  G K + NPRNAA+G LR+L+ + IT  R L F+ + +G  +  E+ A  
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  LQ+
Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDIFQRRQSLAYEIDGVVIKVDDIQLQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345
           +LG  AR+PRW I++KF  ++  T L D++ Q
Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQ 330


>gi|23011878|ref|ZP_00052110.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 295

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/224 (43%), Positives = 141/224 (62%), Gaps = 25/224 (11%)

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNE Y++G+ A G+ +R G DIRVGD V+V RAG+VIPKV+D+++++R  DA 
Sbjct: 1   MLSNATLHNEGYVQGVGADGEPIREGLDIRVGDTVIVVRAGDVIPKVMDVLLDKRPADAV 60

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF FP  CP C S+ VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+ F++EG 
Sbjct: 61  PFVFPETCPACGSKAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 120

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTK-----------IE 525
           G+  ++  F+    A  ++ PAD+F L+          RR+  S  +            +
Sbjct: 121 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEPAPKKPTK 176

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
                 D ++ NL  S+  RR+I L RF+F+LGI  +G   A++
Sbjct: 177 KKGEEEDKAIKNLLASLEARRSIPLNRFLFALGIPQIGESTAKA 220


>gi|71042246|pdb|1ZAU|A Chain A, Adenylation Domain Of Nad+ Dependent Dna Ligase From
           M.Tuberculosis
          Length = 328

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/321 (33%), Positives = 174/321 (54%), Gaps = 19/321 (5%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L     P+ P   +
Sbjct: 15  RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 71

Query: 79  GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG    + F+ V H    LSL+  +  ++L  +  RI+     +  ++  +  E KIDG 
Sbjct: 72  GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193
            +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +PE++EVRGEV+ 
Sbjct: 128 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 187

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG        
Sbjct: 188 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 247

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             ++    +R  G PV+     A    G+   + Y+ E    R  + ++IDG+V KVDE 
Sbjct: 248 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 304

Query: 310 SLQKQLGERARSPRWMISHKF 330
           +LQ++LG  +R+PRW I++K+
Sbjct: 305 ALQRRLGSTSRAPRWAIAYKY 325


>gi|255994850|ref|ZP_05427985.1| DNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993563|gb|EEU03652.1| DNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 647

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 187/714 (26%), Positives = 328/714 (45%), Gaps = 101/714 (14%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGE 81
           +S  +  YY  +  I+ + EYD L          + +L   E+ +G      P   +G E
Sbjct: 14  LSKANKAYYSDANEIMSNREYDEL----------YDELQALEEESGIVLAASPTVNVGYE 63

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
            + SL K+ H    LSL K  ++++L +        W  + +      L PK+DG  + I
Sbjct: 64  ASSSLEKMAHEKKMLSLNKTKSVDELVE--------WLGEQEG----LLSPKLDGLTVVI 111

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVYISKNDFL 199
            Y++G    A  RGDG  GE ++   +    IP    L IP    + +RGE YI+  DF 
Sbjct: 112 TYDEGSLKLAVTRGDGVEGEVITKNAKTFIGIP----LKIPYAGRLVLRGEAYITYGDFN 167

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG-LGKTSEIFAKGQYE 256
            LN+E+    +  Y NPRN  SG +R L+P+ IT  R + F V   LG     F K + E
Sbjct: 168 KLNEEIDDAAK--YKNPRNLCSGSVRNLDPS-ITKERRVRFKVFSMLGGIEHGFNK-KRE 223

Query: 257 MLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            ++ +  +GF V     V   N    + S   E+++    +P  +DGLV   D+      
Sbjct: 224 CMKWLGDIGFDVVHTEMVTGENLKDTMNSLMEELQN--GDIP--VDGLVLTYDDIKTCNL 279

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LGE A+ P+  I+ K++++   T L  ++    RTG++ PVA   PV I G  +  A LH
Sbjct: 280 LGETAKYPKDSIAFKWSDELYDTELTGVEWNTSRTGLVNPVAVFSPVEISGTTVKRAALH 339

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D + GL A GK          GD++ V +A  +IP+V + I    +       +P  C
Sbjct: 340 NLDILDGL-ALGK----------GDKIRVYKANMIIPQVYENITRSGN-----IEYPKVC 383

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C   +   L  +  +++   RC     C A+  +R+ HF  +   NI+G+ ++ ++  
Sbjct: 384 PVCGCGL--KLETEGARVL---RCVND-DCPAKNAKRIVHFAGKSGINIKGISEKTIEKL 437

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             +      IR   D+  ++  +     +I  + GF + S  NL  +I+  + ++L+RFI
Sbjct: 438 IAT----GIIRNEVDLLDIENYKD----EILKLDGFKEKSFENLKKAIDGAKTMTLQRFI 489

Query: 555 FSLGIRHVG----AEIARSLAKYYLS-YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ++    +G     +IA +L    +  ++   ++INNI                +G+++ 
Sbjct: 490 SAMAFTGIGYTNAGKIAAALGFDVMKLFELTPEKINNIEG--------------LGEVLT 535

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQE 668
           ++ +    +      +  ++K          +N   E++ KK V TG +   + R   ++
Sbjct: 536 ESFMAELSDENMKRRMREIIKRCKFKEITRTRN--DEVDGKKFVITGNVNIFKNRDDLKQ 593

Query: 669 YVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +   G  V + +S  TD +I  D  +  SK +KA++LG+ I++E+    +L +
Sbjct: 594 KIEISGGQVVSSVSSNTDFLINNDRESTSSKNKKAKELGIAIISEKDIAEMLGE 647


>gi|288802753|ref|ZP_06408191.1| DNA ligase [Prevotella melaninogenica D18]
 gi|288334903|gb|EFC73340.1| DNA ligase [Prevotella melaninogenica D18]
          Length = 673

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 190/720 (26%), Positives = 318/720 (44%), Gaps = 83/720 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           KE+ SL  +++   D YY     ++ D E+DA          AF  L + E+      P+
Sbjct: 3   KEIQSLVNQLNAASDAYYNGRDELMTDYEWDA----------AFDKLKKLEEETGIILPD 52

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +  + N++  K  H  P LSL K   +EDL K+           ++  I+ +   
Sbjct: 53  SPTQNVSAD-NVAGKKEVHEFPALSLAKTKKVEDLAKW----------AENRPIWLSW-- 99

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y+ GK      RG+GH G +++    AI  I + +      +I  RGE  
Sbjct: 100 KLDGLTLVVTYDNGKLTKVVTRGNGHIGTNITHLSTAIDGILQTIPYKGHLVI--RGEAV 157

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251
           IS  DF   N E      + YANPRN ASG L   +  ++  R+L +    L    E   
Sbjct: 158 ISYPDFEQFNME----AEEEYANPRNLASGSLTLKDINEVKARHLRWIPFTLVYAEEEIN 213

Query: 252 K--GQYEML--QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST--LPYDIDGLVYK 305
              G+ E L  Q  R +   +      AN    ++ ++ E  +  ST   PY +DGLV  
Sbjct: 214 SWGGRMEWLEHQGFRVVDRELIEQPTIAN-IKAVIHHWTERVTGASTSPFPYPVDGLVIT 272

Query: 306 VDEFSLQKQLGERA--RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            D+ ++    G      + R   + K+ ++ A T L  I+     + I +PVA   PV++
Sbjct: 273 YDD-TVYAATGSVTGHHATRAGYAFKWQDESAETELNYIEWSCAASTI-SPVAVFRPVDL 330

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  A+L N    + L    K          G ++ V +A ++IPKV+++I      
Sbjct: 331 EGTTVKRASLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVI-----E 375

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               F  P  CP+C S      +  +G       CT    C A+QL++   FVS++  NI
Sbjct: 376 SVGTFHIPETCPVCHSATEVSESEVSGTRTL--HCTN-THCPAKQLKKFGRFVSKEGVNI 432

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GL +Q +  F         +R  AD+F L        T++  + GFG+ SVT L  +I 
Sbjct: 433 DGLSEQTVQKFIN----LGWVREYADLFHLTEH----ATELRTMEGFGNKSVTKLLAAIE 484

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K RN+   R +F+L I  VG ++   L    LS     + I        +D  S I    
Sbjct: 485 KARNVEARRLLFALNIPLVGQDVCNRL----LSAYPLEELIKTATGSAAEDVFSTI--AG 538

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ- 662
           +G   + + V + ++  N   ++ LL E++ S         +  +    V TG +   + 
Sbjct: 539 IGPEKSASFVRWIKDTDNQSMLQHLLVELNVS-QLSSAPTGNSCQGLTFVVTGDVHHYKN 597

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R++ + Y+   G  V+  +S+ T+ +I  D  +   K +KA++L + I++E++F+    Q
Sbjct: 598 RNELKAYIESQGGKVTGSVSKSTNYLINNDVESSSGKNQKAKELSIPIISEDEFIARFTQ 657


>gi|332992966|gb|AEF03021.1| DNA ligase [Alteromonas sp. SN2]
          Length = 326

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 198/365 (54%), Gaps = 46/365 (12%)

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG  ++NATLHN+D I  L            ++VGD V+++RAG+VIP+VV ++  +R 
Sbjct: 3   VGGVTVSNATLHNQDEIDRLG-----------VKVGDYVIIRRAGDVIPQVVSVVQAKRD 51

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            + +   FP+ CP+C S V +  +       A  RCTGGL C+AQ+ + LKHF SR AF+
Sbjct: 52  DNVKDIVFPTDCPVCGSNVEKLEDE------AVARCTGGLICAAQRKQALKHFASRKAFD 105

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLY 539
           I+GLG + +D    ++     +  PAD F L         K+ +++G     + S   L 
Sbjct: 106 IDGLGDKLVDQLVDAD----LVHSPADFFNL---------KLGDVVGLERMAEKSAAKLL 152

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            S+   +  +L +F+++LGIR VG   A +LA ++        E    I + ++D   LI
Sbjct: 153 LSLEASKATTLAKFLYALGIREVGEATAANLALHF--------ETLEAIRNASED--ELI 202

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGT 657
            V  VG I+A  +  F+  P N   ++ALL+     P+I +  ++ +  ++ K  V TGT
Sbjct: 203 EVQDVGGIVAAHLHNFFNEPHNTDVIDALLEAGINWPAIEKKPQS-ALPLDGKTCVVTGT 261

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L ++ R   +  +  LGA V+  +S+ T  ++ G+  GSKL KAQ+L V++ +E + L  
Sbjct: 262 LSEMGRSDVKAKLQLLGAKVAGSVSKNTSFLVAGEKAGSKLTKAQELDVEVWDEAKLLAF 321

Query: 718 LQQYN 722
           L +++
Sbjct: 322 LAEHD 326


>gi|327313400|ref|YP_004328837.1| NAD-dependent DNA ligase domain-containing protein [Prevotella
           denticola F0289]
 gi|326944680|gb|AEA20565.1| NAD-dependent DNA ligase domain protein [Prevotella denticola
           F0289]
          Length = 684

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 198/727 (27%), Positives = 316/727 (43%), Gaps = 98/727 (13%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           KE+ SL ++++   D YY   + ++ D E+DA          AF  L + E+      P+
Sbjct: 3   KEIQSLVKQLNAASDAYYNGREELMTDYEWDA----------AFDRLKKLEEQTGIVLPD 52

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +  + N++  K  H  P LSL K   +EDL ++           +   I+ +   
Sbjct: 53  SPTQNVSAD-NVAGKKEKHEFPALSLAKTKKVEDLARW----------AEGKPIWLSW-- 99

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +   Y+ G+      RGDGH G +++   RAI  I + +      +I  RGE  
Sbjct: 100 KLDGLTLVATYDNGRLTKVVTRGDGHIGTNITHLSRAIEGILQTVPYRGHLVI--RGEAV 157

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           IS  DF   N E      + YANPRN ASG L   +  ++  R+L++    L  T E   
Sbjct: 158 ISYPDFEKFNME----SEEEYANPRNLASGSLTLKDINEVKQRHLHWIPFTLVYTEEEID 213

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST---------------LP 296
                M    R    PV+  +    T   I +  +   S R T                P
Sbjct: 214 SWGERMAWLERQGFHPVDRELISRPTAGNIQAVIDSWSS-RVTGQALNTRHPEADTQRFP 272

Query: 297 YDIDGLVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
           Y +DGLV   D+ +        G  A   R   + K+ +++A T L  I+     + I +
Sbjct: 273 YPVDGLVITYDDTAYAATGSVTGHHAT--RAGYAFKWQDERAETELDYIEWSCAASTI-S 329

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA  +PV + G  +  A+L N    + L   GK          G ++ V +A ++IPKV
Sbjct: 330 PVAVFQPVELEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKIIPKV 379

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQS--RVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           V ++  ER      F  P  CP+C+S   VV      T  L     CT    C A+QL++
Sbjct: 380 VSVV--ER---MGIFHVPETCPVCRSATEVVESEASGTRTL----HCTN-THCPAKQLKK 429

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
              FVS++  NI+GL +Q +  F         I   AD F L         ++  + GFG
Sbjct: 430 FGRFVSKEGVNIDGLSEQTVQKFIN----LGWICEYADFFHLNEH----ALQLRTMDGFG 481

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           D SV+ L  ++ K R++   R +F+L I  VG ++   L    LS     + I       
Sbjct: 482 DRSVSKLLAAVEKARSVEARRLLFALNIPLVGQDVCNRL----LSAYPLKELIRTATEST 537

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
           +DD  S I  P +G   + + V + ++  N   ++ LL E++          SS  +   
Sbjct: 538 DDDVFSTI--PGIGPEKSASFVRWMKDADNQPVLQHLLAELNVRQASSAPTGSS-CQGLT 594

Query: 652 LVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKI 708
            V TG +   + R++ + Y+   G  V+  +S+ TD +I  D  +   K +KA+ L + I
Sbjct: 595 FVITGDVHHYKNRNELKAYIESQGGKVTGSVSKSTDFLINNDVKSTSGKNQKAKALSIPI 654

Query: 709 MNEEQFL 715
           ++EE F+
Sbjct: 655 ISEEDFI 661


>gi|153813748|ref|ZP_01966416.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174]
 gi|149830168|gb|EDM85261.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174]
          Length = 538

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 162/572 (28%), Positives = 272/572 (47%), Gaps = 79/572 (13%)

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +G E    L K TH  P LSL+K  + + LR FI                  L 
Sbjct: 11  DSPTVNVGYEAVDVLPKETHESPMLSLDKTKDRDVLRAFIGTHPTL------------LS 58

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I + YE G+ + A  RG+G  GE ++   +    IP  L +     + +RGE 
Sbjct: 59  WKMDGLTIVLTYENGELLKAVTRGNGTVGEVITNNAKVFKNIP--LKIAYRGRLVLRGEA 116

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL--GKTS 247
            I+ +DF  +ND +  V  K Y NPRN  SG +R+LN   IT  R + F+   L   +  
Sbjct: 117 IITYSDFEKINDTIEDVDAK-YKNPRNLCSGSVRQLN-NQITAERNVRFYAFALVSAQDV 174

Query: 248 EIFAKGQYEMLQKMRCLGFPV-------NNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           ++    +Y+M + +R  GF V          + +A  +       N+  S         D
Sbjct: 175 DMHNSRKYQM-EWLRRQGFEVVEYRMVTGENLDEAMDYFAHAIEKNDFPS---------D 224

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           GLV   D+ +  + LG  A+ PR   + K+A++   T L +I+    RTG++ PVA  +P
Sbjct: 225 GLVALYDDIAYGESLGSTAKFPRNAFAFKWADEVRETTLREIEWSPSRTGLINPVAVFDP 284

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G  ++ A++HN   +K L            + +GD + V +A  +IP++      E
Sbjct: 285 VELEGTTVSRASVHNVSIVKDL-----------QLGIGDTIQVYKANMIIPQIA-----E 328

Query: 421 RHPDAQPFSFPSFCPIC--QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               +     P  CP C  ++RV+R+ +      V A  C     C+A++++    FVSR
Sbjct: 329 NLTRSSNLEIPEICPACGQEARVIREND------VEALYCMNP-DCAAKKIKAFTLFVSR 381

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           DA NI+GL +  L+ F       F I    DIF +++ +     +I  + GFG+ S  NL
Sbjct: 382 DAMNIDGLSEATLEKFIAK---GF-IHNFGDIFEIEKFRD----EIVTMEGFGEKSYENL 433

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            +SI K    +L + I+SLGI ++G   A+ + ++      F  +++ I + + ++   +
Sbjct: 434 MNSIEKAEETTLAKVIYSLGIANIGLSNAKVICRH------FDDDLDKIRSADEEE---I 484

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
             +  +G +IA+++ +++ NP N   V+ LLK
Sbjct: 485 SAIDGIGPVIAKSLTKYFSNPENNQKVDHLLK 516


>gi|282877678|ref|ZP_06286493.1| NAD-dependent DNA ligase domain protein [Prevotella buccalis ATCC
           35310]
 gi|281300250|gb|EFA92604.1| NAD-dependent DNA ligase domain protein [Prevotella buccalis ATCC
           35310]
          Length = 657

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 185/716 (25%), Positives = 318/716 (44%), Gaps = 88/716 (12%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDA----LKRRCDAIAHAFPDLARSEDPNG 73
           R+++  L +E++   D YY      + D E+DA    LKR         PD   +   +G
Sbjct: 6   RQKMQQLVEELNRASDNYYSGRTESMTDFEWDAKFDELKRLEQESGLVLPDSPTTNVSDG 65

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLE 131
               I G+      K  H  P LSL K    E+L K+     I+  W             
Sbjct: 66  ---TITGQ------KEAHEFPMLSLAKTKKPEELVKWAEERPIWLSW------------- 103

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y+ GK      RG+GH G +++    AI  IP  +  N   ++ +RGE 
Sbjct: 104 -KLDGLTLVVTYDDGKLTKVVTRGNGHVGTNITHLAPAIQGIPATIK-NSGHLV-IRGEA 160

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            IS  DF   N E      + YANPRN ASG L   +  ++  R + +    L  T E  
Sbjct: 161 VISYADFEVFNME----ADEAYANPRNLASGSLTLKDVEEVKRRKIQWIPFTLVFTDEAI 216

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQAN-TFHGIVSYYNEMKSI--RSTLPYDIDGLVYKVD 307
                E L  +R +GF V    R ++ + H +     +  ++   +  P+ +DGLV   D
Sbjct: 217 -NSWGERLDWLREMGFNVVKHERISDPSIHNVNQAIEQWTNLVTHNQCPFPVDGLVITFD 275

Query: 308 EFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           + +        G  A   R  ++ K+ ++ A+T L  I+     + I +PVA  +PV + 
Sbjct: 276 DTAFAATGSITGHHAT--RAGLAFKWEDEAATTELEYIEWSCAASTI-SPVAVFKPVELE 332

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  A+L N    + L   G           G  + V +A ++IPKV+ ++       
Sbjct: 333 GTTVKKASLCNISECERLGIGGP----------GSVLSVIKANKIIPKVIKVVQT----- 377

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                 P  CP+C  +   D++  +G       CT   AC A+QL++   FVS++  +I+
Sbjct: 378 VGALEIPHECPVCHHQTRIDISKASGTRTL--HCTNE-ACPAKQLKKFNRFVSKNGMDID 434

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+ +Q L  F         +   ADI+ L    Q    +I ++ GFG+ S  N+  SI K
Sbjct: 435 GISEQTLAKFIN----LGWLNTYADIYRLPNYAQ----QIASLEGFGNKSAGNMMRSIEK 486

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R +   +F+++L I   G +  + L   Y  ++  ++ I        D   +   +P +
Sbjct: 487 SRTVEARKFLYALTIPMCGVDACKRLLDAYSLHELISKAI------EADTPEAFANIPGI 540

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           G   + ++V+++Q   N   V+ LLK ++   PS     +   +  E    V TG +   
Sbjct: 541 GPETSASVVKWFQVEANRNVVDDLLKTLNVEQPST----QPTGARCEGLTFVITGDVHHY 596

Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQF 714
           + R + + Y+   G  V+  +S+ T+ +I    ++   K +KA++LG++I++E+QF
Sbjct: 597 KNRAELKAYIENQGGHVTGSVSKSTNYLINNNVNSTSGKNKKAKELGIEIISEDQF 652


>gi|325856672|ref|ZP_08172310.1| NAD-dependent DNA ligase OB-fold domain [Prevotella denticola CRIS
           18C-A]
 gi|325483386|gb|EGC86361.1| NAD-dependent DNA ligase OB-fold domain [Prevotella denticola CRIS
           18C-A]
          Length = 684

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 200/731 (27%), Positives = 315/731 (43%), Gaps = 106/731 (14%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           KE+ SL ++++   D YY   + ++ D E+DA          AF  L + E+      P+
Sbjct: 3   KEIQSLVKQLNAASDAYYNGREELMTDYEWDA----------AFDRLKKLEEQTGIVLPD 52

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +  + N++  K  H  P LSL K   +EDL ++           +   I+ +   
Sbjct: 53  SPTQNVSAD-NVAGKKEKHEFPALSLAKTKKVEDLARW----------AEGKPIWLSW-- 99

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP----TIPRVLSLNIPEIIEVR 188
           K+DG  +   Y+ G+      RGDGH G +++   RAI     TIP    L I      R
Sbjct: 100 KLDGLTLVATYDNGRLTKVVTRGDGHIGTNITHLSRAIEGFLQTIPYRGHLVI------R 153

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE  IS  DF   N E      + YANPRN ASG L   +  ++  R+L++    L  T 
Sbjct: 154 GEAVISYPDFEKFNME----SEEAYANPRNLASGSLTLKDINEVKQRHLHWIPFTLVYTE 209

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST------------- 294
           E        M    R    PV+  +    T   I +  +   S R T             
Sbjct: 210 EEIGSWGERMAWLERQGFHPVDRELISRPTAENIQAVIDSWSS-RVTGQALNTRYPEADT 268

Query: 295 --LPYDIDGLVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
              PY +DGLV   D+ +        G  A   R   + K+ +++A T L  I+     +
Sbjct: 269 QRFPYPVDGLVITYDDTAYAATGSVTGHHAT--RAGYAFKWQDERAETELDYIEWSCAAS 326

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
            I +PVA  +PV + G  +  A+L N    + L   GK          G ++ V +A ++
Sbjct: 327 TI-SPVAVFQPVELEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKI 375

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQS--RVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           IPKVV ++  ER      F  P  CP+C+S   VV      T  L     CT    C A+
Sbjct: 376 IPKVVSVV--ER---MGIFHVPETCPVCRSATEVVESEASGTRTL----HCTND-HCPAK 425

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
           QL++   FVS++  NI+GL +Q +  F         I   AD F L         ++  +
Sbjct: 426 QLKKFGRFVSKEGVNIDGLSEQTVQKFIN----LGWICEYADFFHLNEH----ALQLRTM 477

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            GFGD SV+ L  ++ K R++   R +F+L I  VG ++   L    LS     + I   
Sbjct: 478 DGFGDRSVSKLLAAVEKARSVEARRLLFALNIPLVGQDVCNRL----LSAYPLKELIRTA 533

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
               +DD  S I  P +G   +   V++ ++  N   ++ LL E++           S  
Sbjct: 534 TESTDDDVFSTI--PGIGPEKSANFVQWMKDADNQPVLQHLLAELNVRQASSAP-TGSGC 590

Query: 648 ENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQL 704
           +    V TG +   + R++ + Y+   G  V+  +S+ TD +I  D  +   K +KA+ L
Sbjct: 591 QGLTFVITGDVHHYKNRNELKAYIESQGGKVTGSVSKSTDFLINNDVESTSGKNQKAKAL 650

Query: 705 GVKIMNEEQFL 715
            + I++EE F+
Sbjct: 651 SIPIISEEDFI 661


>gi|330800435|ref|XP_003288242.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum]
 gi|325081750|gb|EGC35255.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum]
          Length = 835

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 174/653 (26%), Positives = 294/653 (45%), Gaps = 118/653 (18%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL--NK 77
           E++ L  +I  ++D YY  S   I D EYD L ++ +++     +     D N  L  NK
Sbjct: 51  EINELRNKIKRYNDLYYNKSISEISDYEYDKLFKKLESLEKQINNDEDGND-NASLITNK 109

Query: 78  IGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------------ 123
           +G  +  N +  K  H+   LSL+  +++ED++ F  +I +F  KK              
Sbjct: 110 VGAPVRSNGNNNKYRHTTRMLSLQNTYSLEDIQSFKNKIEKFLLKKLKLENNTTSNSDLN 169

Query: 124 -------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSA-CIRAIPTIPR 175
                  N++ +++E K DG  I++ Y   K V    RGDG  GED+++  ++ IP + +
Sbjct: 170 TLSSFGINNLEYSMELKYDGIGISLVYSDSKLVRILTRGDGEIGEDITSNALQFIPQLNK 229

Query: 176 VLSLNIP------EIIEVRGEVYISKNDFLALND-EMIAVGRKPYANPRNAASGILRR-- 226
           +++L +P      +  E+RGEV ++K     +N  +        Y N RN  SGILR+  
Sbjct: 230 LINLKLPNQYSNYKEFEIRGEVVLNKTYLETINKIKSDNNDTHQYKNTRNIVSGILRKNL 289

Query: 227 ------------------------LNPTDITRYL------NFFVHGL---GKTSEIFAKG 253
                                   +   DI + L      +FF +      K   I    
Sbjct: 290 IEIDDEQHNENNVDDDNSSNSSSNVKKNDIEQLLHNNIKFDFFAYNFIPSNKNQTINGDT 349

Query: 254 QYEMLQKMRCLGFPVNNGV----------RQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           Q   L  ++ +GF V+ G           +Q +    I  Y  +    R    +DIDG+V
Sbjct: 350 QSSRLGLLKSIGFQVDPGADVISLPTLNNKQPHDIGPIQQYIEKWNENRFKFQWDIDGIV 409

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K++    Q +LG+  RSPRW  ++KF  K   + +LDI +Q+GRTG +TPVA ++PV I
Sbjct: 410 IKINSIDTQTKLGDINRSPRWAFAYKFNAKSEVSTILDIVLQVGRTGKVTPVALVDPVVI 469

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII------ 417
            G  I+ ATL+N +YI+ L            +  G +VL++RAG+VIPK++  I      
Sbjct: 470 HGVTISRATLNNLNYIQKL-----------QLNKGSKVLIERAGDVIPKIISKINVPEQQ 518

Query: 418 ---VNERHPDA---QPFSFPS----FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
                 +  D      F   S     CP C +    +L  K G +   + C     C  Q
Sbjct: 519 PQEQQLQPEDGYLKNIFKCNSNGNLVCP-CANE--SELIQKPGYI--DYFCVDS-NCPDQ 572

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
           Q + +  FV + A NI+G+G  Q+   F+       I    D++ L++ +    +++  +
Sbjct: 573 QFQEISWFVDKKAMNIKGIGISQIKDLFEHN----FIEDAGDLYLLKKYK----SQLLEL 624

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
            G+  V V N+ ++I + ++  L   +  +GI  +G   ++ LA+ +    N 
Sbjct: 625 KGYNHVKVNNMLEAIEESKSRGLSSLLCGMGIPGIGRANSKILAQKFQHLDNL 677


>gi|325269002|ref|ZP_08135623.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608]
 gi|324988623|gb|EGC20585.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608]
          Length = 684

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 195/728 (26%), Positives = 319/728 (43%), Gaps = 100/728 (13%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72
           KE+  L   ++   D YY   + ++ D E+DA          AF  L + E+      P+
Sbjct: 3   KEIQRLVDRLNAASDAYYNGREELMTDYEWDA----------AFDRLKKLEEQTGIVLPD 52

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +  + N++  K  H  P LSL K   +EDL ++           +   ++ +   
Sbjct: 53  SPTQNVSAD-NVAGKKEKHEFPALSLAKTKKVEDLARW----------AEGKPVWLSW-- 99

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +   Y+ G+      RGDGH G +++   RAI  I + +      +I  RGE  
Sbjct: 100 KLDGLTLVATYDNGRLTKVVTRGDGHIGTNITYLSRAIEGILQTVPYRGHLVI--RGEAV 157

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT-SEIF 250
           IS  DF   N E      + YANPRN ASG L   +  ++  R+L++    L  T  EI 
Sbjct: 158 ISYPDFEKFNME----SEEAYANPRNLASGSLTLKDINEVRQRHLHWIPFTLVYTEGEIG 213

Query: 251 AKGQYEMLQKMRCLGF-PVNNGV---RQANTFHGIVSYYNEMKSIRS-----------TL 295
           + G  E +  +   GF PV+  +     A     ++  ++   + ++             
Sbjct: 214 SWG--ERMAWLERQGFHPVDRELISRPTAGNIQAVIDSWSSRVTGQALNTRHPAADPQCF 271

Query: 296 PYDIDGLVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
           PY +DGLV   D+ +        G  A   R   + K+ +++A T L  I+     + I 
Sbjct: 272 PYPVDGLVITYDDTAYAATGSVTGHHAT--RAGYAFKWQDERAETELDHIEWSCAASTI- 328

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           +PVA  +PV + G  +  A+L N    + L   GK          G ++ V +A ++IPK
Sbjct: 329 SPVAVFQPVELEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKIIPK 378

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQS--RVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           VV ++  ER      F  P  CP+C+S   VV      T  L     CT    C A+QL 
Sbjct: 379 VVSVV--ER---TGIFHVPETCPVCRSATEVVESEASGTRTL----HCTNA-HCPAKQLR 428

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
           +   FVS++  NI+GL +Q +  F         I   AD F L         ++  + GF
Sbjct: 429 KFGRFVSKEGVNIDGLSEQTVQKFIN----LGWICEYADFFHLNEH----ALQLRAMDGF 480

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           GD SV+ L  ++ K R++   R +F+L I  VG ++   L    LS     + I      
Sbjct: 481 GDRSVSKLLAAVEKARSVEARRLLFALNIPLVGQDVCNRL----LSAYPLKELIRTATES 536

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
            +DD  S I  P +G   + + V + ++  N   ++ LL E++          SS  +  
Sbjct: 537 TDDDVFSTI--PGIGPEKSASFVRWMKDEDNQPVLQHLLAELNVRQASFAPTGSS-CQGL 593

Query: 651 KLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVK 707
             V TG +   + R++ + Y+   G  V+  +S+ TD +I  D  +   K +KA+ L + 
Sbjct: 594 TFVITGDVHHYKNRNELKAYIESQGGKVTGSVSKSTDFLINNDVESTSGKNQKAKALSIP 653

Query: 708 IMNEEQFL 715
           I++EE F+
Sbjct: 654 IISEEDFI 661


>gi|317455470|pdb|3PN1|A Chain A, Novel Bacterial Nad+-Dependent Dna Ligase Inhibitors With
           Broad Spectrum Potency And Antibacterial Efficacy In
           Vivo
          Length = 318

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/323 (34%), Positives = 179/323 (55%), Gaps = 21/323 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K++
Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293

Query: 308 EFSLQKQLGERARSPRWMISHKF 330
           + +LQ +LG  +++PRW I++KF
Sbjct: 294 DIALQNELGFISKAPRWAIAYKF 316


>gi|289751694|ref|ZP_06511072.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium
           tuberculosis T92]
 gi|289692281|gb|EFD59710.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium
           tuberculosis T92]
          Length = 409

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 206/427 (48%), Gaps = 36/427 (8%)

Query: 261 MRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +R  G PV+     A    G+   + Y+ E    R  + ++IDG+V KVDE +LQ++LG 
Sbjct: 8   LRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEVALQRRLGS 64

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  ATLHN  
Sbjct: 65  TSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNAS 124

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            IK         R G  + +GD V++++AG+VIP+V+  +V  R    + F  P+ CP C
Sbjct: 125 EIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPEC 173

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +  +   K G   A  RC     C  Q  ER+ H  SR+  +IE LG +      ++
Sbjct: 174 GSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQA 228

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           +     I    ++F L  R    T       G    +   L  +++K +   L R + +L
Sbjct: 229 K----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVAL 284

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            IRHVG   AR+LA  + S       ++ I A + D    L  V  VG  IA A+ E++ 
Sbjct: 285 SIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTIAAAVTEWFA 334

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              +   V+         +   +++V   +    +V TG+L    R  A+E +   G   
Sbjct: 335 VDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKA 394

Query: 678 SAILSRK 684
           +    R+
Sbjct: 395 AGSCRRR 401


>gi|215428469|ref|ZP_03426388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T92]
          Length = 411

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 206/427 (48%), Gaps = 36/427 (8%)

Query: 261 MRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +R  G PV+     A    G+   + Y+ E    R  + ++IDG+V KVDE +LQ++LG 
Sbjct: 9   LRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEVALQRRLGS 65

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  ATLHN  
Sbjct: 66  TSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNAS 125

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            IK         R G  + +GD V++++AG+VIP+V+  +V  R    + F  P+ CP C
Sbjct: 126 EIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPEC 174

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +  +   K G   A  RC     C  Q  ER+ H  SR+  +IE LG +      ++
Sbjct: 175 GSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQA 229

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           +     I    ++F L  R    T       G    +   L  +++K +   L R + +L
Sbjct: 230 K----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVAL 285

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            IRHVG   AR+LA  + S       ++ I A + D    L  V  VG  IA A+ E++ 
Sbjct: 286 SIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTIAAAVTEWFA 335

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              +   V+         +   +++V   +    +V TG+L    R  A+E +   G   
Sbjct: 336 VDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKA 395

Query: 678 SAILSRK 684
           +    R+
Sbjct: 396 AGSCRRR 402


>gi|317470612|ref|ZP_07929998.1| DNA ligase [Anaerostipes sp. 3_2_56FAA]
 gi|316901903|gb|EFV23831.1| DNA ligase [Anaerostipes sp. 3_2_56FAA]
          Length = 559

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 154/571 (26%), Positives = 279/571 (48%), Gaps = 51/571 (8%)

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           G+G  GE V+   +    +P+ ++     +I  RGE  I  +DF  +N++M  +  + Y 
Sbjct: 34  GNGEVGEVVTNNAKVFVNLPKKIAYKGTLVI--RGEAVIHYSDFRRMNEDMEDLDSR-YK 90

Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNG 271
           NPRN  SG +R+LN  ++T  R + F+   +    ++ F     E     R LGF + + 
Sbjct: 91  NPRNLCSGSVRQLN-NEVTAKRNVRFYGFSVADVPDVDFHNSVEEKFIWARSLGFDIVDY 149

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
           V  A T   +                  DGLV   D+ +  + LG  A+ PR  I+ K+A
Sbjct: 150 V--AVTKDTVAEEVERFSQAIENNDQPSDGLVLIYDDIAYGRSLGTTAKFPRDSIAFKWA 207

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
           ++ A T L +I+    RTG++ PVA  +PV + G+ ++ A+LHN   ++ L         
Sbjct: 208 DEIAETTLKEIEWSPSRTGLINPVAIFDPVELEGSTVSRASLHNISVMEEL--------- 258

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             ++ VGD++ V +A  +IP++ +   N+      P   P  CP C  +   +       
Sbjct: 259 --ELGVGDQISVYKANMIIPQLAE---NQTRSGDAP--IPDTCPACGGKTEIEEENGIRT 311

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           LV  ++      CSA++++   HFVSRDA N++GL +  L    K  D      +  D+F
Sbjct: 312 LVCPNQF-----CSAKKIKLFSHFVSRDAMNVDGLSEASL---HKMMDKGLLNEL-YDLF 362

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+  ++    +I  + GFG+ S       +   + ++L +F++SLGI +VG   A+ + 
Sbjct: 363 TLKEHKE----EIIEMEGFGEKSFIIWRMPLRGTKKVTLPKFLYSLGIANVGLSNAKLIC 418

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           +Y      F  +++ I     +D+ +   +  +G II +A+  +++   N   V+ LL+ 
Sbjct: 419 RY------FEDDLDAIRNAEAEDFTA---IDGIGPIIGEAVSGYFRLENNKQTVDRLLQY 469

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           V     R  +     ++ K  V TG+L+  + R + QE +  LG   +  +++KTD +I 
Sbjct: 470 VEIE-KRQTEETEKLLDGKTFVITGSLEHYENRKQLQEQIEILGGKATGSVTKKTDYLIN 528

Query: 691 G--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              ++  SK +KA +L + I+ EE+F+ +++
Sbjct: 529 NNKNSASSKNKKAMELSIPIITEEEFMDMIK 559


>gi|282881715|ref|ZP_06290378.1| DNA ligase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304474|gb|EFA96571.1| DNA ligase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 655

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 183/725 (25%), Positives = 315/725 (43%), Gaps = 104/725 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------P 71
           ++ +  L  +++   D YY     ++ D E+DAL          F +L + E       P
Sbjct: 4   QQRMRKLVDKLNLASDNYYGGKPELMTDYEWDAL----------FDELKQLEMSSGVVLP 53

Query: 72  NGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P N++  GEMN    K  H  P LSL K     DL K+           +   ++ + 
Sbjct: 54  DSPTNRVSDGEMNGK--KEAHEFPALSLAKTKQPADLVKW----------AEGKPVWLSW 101

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
             K+DG  +   Y+ G+      RG+GH G +++   +AI  +P  +      +I  RGE
Sbjct: 102 --KLDGLTLVATYDDGRLSKVVTRGNGHIGTNITHLAKAIGGMPATIPFQGHTVI--RGE 157

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-----------YLNFF 239
             IS  DF   N E        YANPRN ASG L   +  ++ R           ++   
Sbjct: 158 AVISYADFEVFNLE----SDDAYANPRNLASGSLTLKDVKEVERRHIQWIPFTLVFVEQE 213

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           +   G+  +   +  +  +++ R +  P    V Q      ++  + E K  +   P+ +
Sbjct: 214 IKTWGEQMDWLEQQGFHPVERER-INEPSLPVVEQ------VIERWTE-KVTQKRNPFPV 265

Query: 300 DGLVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           DGLV   D+ S        G  A   R  ++ K+ ++ A+T L  I+     + I +PVA
Sbjct: 266 DGLVVVFDDISFAATGSVTGHHAT--RAGLAFKWQDEAATTTLRHIEWSCAASTI-SPVA 322

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
              PV + G  +  A+L N    K L   G           G  + V +A ++IPKV+ +
Sbjct: 323 VFAPVELEGTTVQRASLCNISECKRLGIGGP----------GSTLSVIKANKIIPKVIRV 372

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           I +        F  P  CP+C    V   +  +G L     CT   AC A+Q+++   FV
Sbjct: 373 IQS-----VGTFDIPKSCPVCHHEAVVRESAVSGTLTL--HCTNE-ACPAKQIKKFDRFV 424

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           S+   NI+G+ +Q LD F         I   ADI+    R      ++ ++ GFG+ S+ 
Sbjct: 425 SKAGMNIDGISEQTLDKFIN----LGWIETYADIY----RLSAHAAELASLEGFGEKSMR 476

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           N+  SI + R +    F+++L I   G ++ + L + Y      A+ I+      + D  
Sbjct: 477 NIMQSIEQSRTVEAHHFLYALSIPLCGVDVCKRLLEAY----PLAELISVATTATSLD-- 530

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLV 653
           +   +P +G   + ++V ++Q   N   V  LL EV    PS+    +   +  +    V
Sbjct: 531 AFAHIPGIGPEKSASLVTWFQGEANQRIVNDLLSEVQIEEPSL----QPQGARCQGMTFV 586

Query: 654 FTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMN 710
            TG +   + R + + Y+   G  V+  +S+ T  +I  D  +   K +KA+ LG+ I++
Sbjct: 587 ITGDVHHYKNRAELKSYIESQGGKVTGSVSKSTTYLINNDVNSTSGKNKKAKDLGISIIS 646

Query: 711 EEQFL 715
           E++F+
Sbjct: 647 EDEFV 651


>gi|289669579|ref|ZP_06490654.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 511

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 143/520 (27%), Positives = 226/520 (43%), Gaps = 157/520 (30%)

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           I+IQIGRTG  TPVARL+PV++ G ++TNATLHN D I  LD           +RVGD V
Sbjct: 7   IEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-----------VRVGDTV 55

Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
           +V+RAG+VIP+V  ++ ++R P  Q +  P+ CP+C S +VR+     G+  A  RC+G 
Sbjct: 56  IVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVRE----EGQ--AVWRCSGE 109

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQ--------------------------QLDFFF 495
           L C AQ+ E  +HFVSR A +++GLG++                          QL    
Sbjct: 110 LTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVQGVADIYLLTVDQLLQLRMIS 169

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIE---NILGFGDVSVT---------------- 536
            +E P   +R   +        Q  TT +    ++ G  +V  T                
Sbjct: 170 TAESPHAFLREAREHLASGAYAQLETTVVGIGVDMAGEREVPPTWQADLLRAGLPKFDWN 229

Query: 537 ----------NLYDSINKRRNISLERFIFSLGI---------------------RH---- 561
                     NL ++I   R+ +LERF+F+LGI                     RH    
Sbjct: 230 RKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFGDLELIRHLPWP 289

Query: 562 -------VGAEIARSLAKYYLSYQNFAQEINNII------------------AHNNDDWL 596
                  +G E+AR+L  ++L      Q I++++                  A +    L
Sbjct: 290 LFKRVPDIGGEVARALG-HFLDQPGNQQAIDDLLQRGVRIGDTHPPSPKLREALSFASVL 348

Query: 597 SLIRVPLVGDIIAQ-------------------------------AIVEFYQNPRNICAV 625
             + +P V  + AQ                               A++++   P N    
Sbjct: 349 EDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVVAALLQWLDRPENAALA 408

Query: 626 EALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            A  + +   + R    +   +  ++ + +V TGTL  + R  A++ +  LGA V+  +S
Sbjct: 409 SAAQQAMETVLARLPEADALQTGPLDGQSVVITGTLAALTRDAAKQRLEALGAKVAGSVS 468

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +KT  ++ G+  GSKL+KAQ LGV I +E + L  L ++ 
Sbjct: 469 KKTAFLVAGEEAGSKLDKAQSLGVDIWDEARLLAFLSEHG 508


>gi|317968249|ref|ZP_07969639.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0205]
          Length = 372

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 201/403 (49%), Gaps = 39/403 (9%)

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++PRW I+ K+  ++A ++LL +  Q+GRTG++TPVA  EPV + G  ++ ATLHN D +
Sbjct: 3   KAPRWAIALKYPAEEAPSKLLRLSCQVGRTGVITPVAEFEPVPLAGTSVSRATLHNADRL 62

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
             L           D+  GD ++V++AGE+IP+VV ++   R   A+    P  CP C S
Sbjct: 63  LEL-----------DLHAGDTIVVRKAGEIIPEVVRVLPELRPAAAERLELPHTCPECGS 111

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +VR+         AA RC    +C A     L+H+VS+ A +++GLG + ++       
Sbjct: 112 ELVREEGE------AATRCVNS-SCPAILRGALRHWVSKGALDVDGLGSKLIEQLVDR-- 162

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
                 +   I  L R        +E +   G  S  NL  ++   +     R ++ LGI
Sbjct: 163 -----GLVGSIAGLYRLDCALLCSLERM---GSKSAENLVAALADSKQQPWHRQLYGLGI 214

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            HVG   A++LAK + S    A +++       +   ++  V  +G  IAQ++ +++   
Sbjct: 215 HHVGEVNAKALAKAFPS----AADLSTAATETPE---AITAVYGIGAEIAQSLQQWFSTG 267

Query: 620 RN---ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            N   + ++E L     S    + E +  + +  +  V TGTL  + R +AQ  +   G 
Sbjct: 268 ANQELLTSLERLGFSLASGDEEQPEPSGPAPLTGQTFVLTGTLPSLSRSQAQALIEAAGG 327

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            V+  +S+KT  ++ G+  GSKL KA+ LG+ +++E     LL
Sbjct: 328 KVTGSVSKKTSYVVAGEEAGSKLSKAESLGIPVLDEASLQALL 370


>gi|257458169|ref|ZP_05623323.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580]
 gi|257444463|gb|EEV19552.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580]
          Length = 641

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 188/724 (25%), Positives = 325/724 (44%), Gaps = 115/724 (15%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  LE  I  H + YY  ++P I D+++D L            D  RS DP   L     
Sbjct: 7   IQELEALIKKHQNLYYN-AEPEISDADFDMLW-----------DELRSLDPQNELFATVP 54

Query: 81  EMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           + +   F K  H IP  S EK  + E  +K        W +K   + F  ++ K+DG  +
Sbjct: 55  KDSADGFPKAEHIIPMGSQEKAADPESFQK--------WAEKMPFTEFL-VQYKLDGASM 105

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--------IPEIIEVRGEV 191
            ++YEKG+ + A  RGDG  G+D++A ++ +  +  VL L          P    VRGEV
Sbjct: 106 ELQYEKGRLIRAVTRGDGKIGDDITANVKKMQGV--VLELKGDSAPTGAAPFSGGVRGEV 163

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH--GLGKTSEI 249
            ++K        E++        N RNAA+G+++R + +  + +L    +    G     
Sbjct: 164 LMTK--------EVLHRFYPDKKNCRNAANGLMKRKDGSG-SEHLEIICYDAAAGTIGHP 214

Query: 250 FAK-----GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           F +      + E L  ++  GF +   V +  +   ++ Y   +  IRST+PYDIDGLV 
Sbjct: 215 FTEPAPFTTETEKLNWLKTQGF-LQVPVTRCGSVREVIDYRAHIMDIRSTIPYDIDGLVI 273

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL-TPVARLEPVNI 363
           K D   +      RAR P   I+ KF+ ++A T L    ++   +G+  TP+A ++PV +
Sbjct: 274 KNDLIDIADL--SRAR-PEKQIAFKFSLEEAITALR--SVEWSESGVTYTPIALIDPVQL 328

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  A L N + I  L           ++++G RVLV + GE+IPK+  +I  E   
Sbjct: 329 AGTTVKRANLCNPNMIAEL-----------NLKIGSRVLVTKRGEIIPKIEALI--ENPA 375

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            A+P   PS C  C + V+RD   +         C    AC      R++ ++  D  +I
Sbjct: 376 SAKPIEQPSRCTSCGT-VLRDEGTRL-------YCPNP-ACPKLIHHRIEKWI--DTLDI 424

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYD 540
           +  G   +   F ++     IR  +D++TL          +E +  F   G  S   +Y 
Sbjct: 425 QDFGTTLIKRLFDTQ----RIRSVSDLYTLT---------VEELAAFERMGQKSAEKVYR 471

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +++ +R I L  F+    I  +G  +   L             +  ++A + +D+ ++ +
Sbjct: 472 ALHAKREIPLPVFVAGFDIEGIGRTMMEKLVDAGFDT------LEKLLAASEEDFAAVYQ 525

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTG 656
               G ++A  +    +  ++      +L+     I   +  VS++    +  K   FTG
Sbjct: 526 ---FGSVLAHTLTAGLREVKD-----EMLRLTGSGIIVIQPPVSAQENLPLAGKSFCFTG 577

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQF 714
            L  ++R +A+  V Q G  V + +++    ++    D+  SK +KAQ+LG  I+ EE+F
Sbjct: 578 ELNSLKRKEAEAMVQQKGGTVKSSVTKGLTYLVTNTPDSGSSKNKKAQELGTVIITEEEF 637

Query: 715 LFLL 718
           L LL
Sbjct: 638 LKLL 641


>gi|281420079|ref|ZP_06251078.1| putative DNA ligase [Prevotella copri DSM 18205]
 gi|281405879|gb|EFB36559.1| putative DNA ligase [Prevotella copri DSM 18205]
          Length = 656

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 195/728 (26%), Positives = 328/728 (45%), Gaps = 93/728 (12%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED--- 70
           +E+   ++ SL + ++   D YY     ++ D E+DAL          F  L R E+   
Sbjct: 1   MEEKLLQMKSLVERLNQASDSYYNGKGELMTDYEWDAL----------FDQLKRLEEETG 50

Query: 71  ---PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              PN P N++  E ++   K  H    LSL K   + DL K+           +D  I+
Sbjct: 51  EILPNSPTNRVS-EDSIVGKKEEHEFAALSLAKTKQVSDLVKW----------AEDRPIW 99

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            +   K+DG  + + Y+ GK      RG+GH G +++    AI  IP  +S     +  V
Sbjct: 100 ISW--KLDGLTLVVTYDGGKLTKIVTRGNGHIGTNITHLAPAISGIPATISEKGHLV--V 155

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGE  IS  DF    ++ I      YANPRN ASG L   +  ++  R++ +    L  T
Sbjct: 156 RGEAVISYADF----EQFIIESEGDYANPRNLASGSLTLKDIEEVKQRHIQWIPFTLVYT 211

Query: 247 S-EIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDG 301
             E+ + G  E +Q ++ LG  PV        T   I   +  + E  + +   P+ +DG
Sbjct: 212 ERELSSWG--ERMQMLKDLGMNPVERERIDHPTTENIQLEIDKFTEKVTSKKN-PFPVDG 268

Query: 302 LVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           LV   D+ +        G  A   R   + K+ ++ A T L  I+     + I TPVA  
Sbjct: 269 LVICYDDTAYAATGSVTGHHA--TRAGFAFKWQDEHADTVLDHIEWSCAASTI-TPVAVF 325

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV + G  +  A+L N    + L    K          G R+ V +A ++IPKV++I  
Sbjct: 326 KPVELEGTTVQRASLCNVSECERLGIGDK----------GTRLQVIKANKIIPKVINIT- 374

Query: 419 NERHPDAQPFSFPSFCPICQS-RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
                    F  P+ CP+C +  VVR+    T  L     CT   AC A+QL++   FVS
Sbjct: 375 ----EVVGSFVIPAECPVCHAPAVVRESESGTKTL----HCTNA-ACPAKQLKKFARFVS 425

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           ++  NI+G+ +Q +   +K  +  F I   AD + L+        +I    GFG  SV+N
Sbjct: 426 KEGINIDGISEQTV---WKFINHGF-ISEYADFYKLKNY----AFEISCFEGFGKKSVSN 477

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L +S+ K R+      +++L I   G ++A+ L    LS     + I        DD   
Sbjct: 478 LLESVEKSRHTDGRHLLYALNIPLCGGDVAKKL----LSRYKVKELIETARLSMFDD--E 531

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--T 655
              +  +G   +   + ++++  +   V+ LL E+   I   ++ V +  + + L F  T
Sbjct: 532 FASIDGIGPEKSAKFIAWFKDDVHFLHVQHLLSEL---IIEEQEPVETGNKCQGLTFVVT 588

Query: 656 GTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEE 712
           G +   + R++ + Y+   G  V+  +S+ T+ +I  D  +  SK +KA +L + I+ E+
Sbjct: 589 GDVHHYKNRNELKAYIESQGGKVTGSVSKSTNFLINNDAASQSSKNKKAHELNIPIITED 648

Query: 713 QFLFLLQQ 720
           +F+   Q+
Sbjct: 649 EFIEKFQE 656


>gi|307565636|ref|ZP_07628114.1| NAD-dependent DNA ligase domain protein [Prevotella amnii CRIS
           21A-A]
 gi|307345668|gb|EFN91027.1| NAD-dependent DNA ligase domain protein [Prevotella amnii CRIS
           21A-A]
          Length = 676

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 192/745 (25%), Positives = 328/745 (44%), Gaps = 110/745 (14%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---- 70
           E  RK +  L   ++   D YY     I+ D E+DA          AF +L + E     
Sbjct: 3   ENKRKRMEELVLCLNNASDAYYNGKGEIMTDFEWDA----------AFDELKKIEKELGI 52

Query: 71  --PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSI 126
             P+ P N +  + N++  K  H  P LSL K  + E L K+     I+  W        
Sbjct: 53  ILPSSPTNNVSAD-NITGKKEEHEYPALSLAKTKSEEVLVKWAANRPIWLSW-------- 103

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
                 K+DG  + + Y++GK      RG+GH G +++    AI  I  + ++N  E + 
Sbjct: 104 ------KLDGLTLVVTYDEGKLTKVVTRGNGHIGTNITHLASAIKGI--LPTINTKEHLV 155

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNF----FVH 241
           +RGE  IS  DF   N E      + YANPRN ASG L   +  ++ +R+L +     VH
Sbjct: 156 IRGEAVISYADFEIFNME----SEEEYANPRNLASGSLTLKDINEVKSRHLQWKPFTLVH 211

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNN----GVRQANTFHGIVSYYNEM---KSIRST 294
                  I + G  E +  +  LGF         +        +++ + +     + +  
Sbjct: 212 C---DRTIISWG--ERMSFLDSLGFNTVEREFIAIPSIKNIEDVIAAWTQRVTDSARKDK 266

Query: 295 LPYDIDGLVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
            PY +DGLV   D+          G  A   R  ++ K+ ++   T L  I+     T  
Sbjct: 267 QPYPVDGLVITYDDTDYAATGSVTGHHA--TRAGLAFKWQDESMETELKFIEWSCA-TST 323

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           ++PVA   PV I G ++  A+L N    + L        G  D   G +++V +A ++IP
Sbjct: 324 ISPVAVFAPVEIEGTIVKRASLCNISECERL--------GIGD--AGTKIMVIKANKIIP 373

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           KV  I V++R      F  PS CP+CQ       N K+G       CT    C A+QL++
Sbjct: 374 KV--ICVSKR---IGSFLIPSVCPVCQCPTEIVENEKSG--TRTLHCTNHY-CPAKQLKK 425

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L  FVS++  NI+GL +Q +  F         ++  +DIF L+++++        I GFG
Sbjct: 426 LARFVSKEGVNIDGLSEQTMQKFIN----LGWVKEYSDIFQLKKKEKELKQ----IDGFG 477

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
             S  NL+ +I K R +  ++ +++L I  +G ++   L   Y   +  +      IA  
Sbjct: 478 TKSCENLFSAIEKSRIVEAKQLLYALSIPLIGKDVCNRLLSTYSLEELISMSRPTTIASQ 537

Query: 592 N--------DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
                    D       +  +G   + + V + ++  N   ++ LL+E++       K  
Sbjct: 538 QLLFNEAYADTETIFSTIAGIGPEKSTSFVRWMRDENNYTQLQHLLQELTI------KQT 591

Query: 644 SSEIENKK-----LVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--G 695
           ++EI+ K       V TG +   + R++ + Y+   G  V+  +S+ T+ +I  D     
Sbjct: 592 TTEIKGKSCKGLTFVITGDVYHYKNRNELKAYIESEGGKVTGSVSKNTNYLINNDTESIS 651

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +K +KA++L + I++E+ F+ L  +
Sbjct: 652 NKNKKAKELNIPIISEDDFISLFNK 676


>gi|3746807|gb|AAC64067.1| NAD-dependent DNA ligase homolog [Bartonella quintana]
          Length = 180

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/177 (47%), Positives = 120/177 (67%), Gaps = 1/177 (0%)

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248
           +VY+ + +F ALN      G+  +ANPRNAA+G LR+L+P    +R L+FF +  G+ SE
Sbjct: 3   KVYMRRENFQALNMSQQEKGKFVFANPRNAAAGSLRQLDPRITASRKLHFFAYACGEVSE 62

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            FA  Q EM++K++  GF +N   +   T   I+SYY++++  R +L YDIDG+VYKV++
Sbjct: 63  TFAASQMEMMKKLKEYGFFINPLTKSFKTLEEIISYYHDIEECRHSLSYDIDGIVYKVND 122

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
             LQ +LG  +RSPRW ++HKF  ++A   L  IDIQ+GRTG LTPVARL P+ IGG
Sbjct: 123 LKLQMRLGFVSRSPRWAVAHKFPAEKAMALLEGIDIQVGRTGALTPVARLAPITIGG 179


>gi|283769205|ref|ZP_06342109.1| NAD-dependent DNA ligase domain protein [Bulleidia extructa W1219]
 gi|283104181|gb|EFC05560.1| NAD-dependent DNA ligase domain protein [Bulleidia extructa W1219]
          Length = 656

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 181/717 (25%), Positives = 324/717 (45%), Gaps = 89/717 (12%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L Q+++   + YY   + I+ D E+D L     A+      +     P+ P  K
Sbjct: 4   KERMLALIQQLNEASNAYYNGQREILSDQEWDRLFDELKALEEQTGLIL----PDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +  +  +   K  H  P LSL K  ++ +L K+           D + I+ +   K+DG 
Sbjct: 60  VSADEIVGQ-KEIHEFPALSLAKTKSVNELVKW----------ADGHPIWMSW--KLDGL 106

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YEKGK      RGDGH G +++  +  +  IP+   +  P  + VRGE  IS  D
Sbjct: 107 TLVVTYEKGKLEKVVTRGDGHVGTNITHLVDGLFGIPK--EIRYPGRLIVRGEAIISYVD 164

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNF----FVHGLGKTSEIFAK 252
           F    ++ +    + YANPRN ASG L     +++  R ++F     VH      EI + 
Sbjct: 165 F----EQYVRETGENYANPRNLASGSLSLKKASEVLERKIHFRPFTLVHC---DQEINSW 217

Query: 253 GQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           G  + +  +  LGF V            +   ++  ++E    R   PY +DGLV   ++
Sbjct: 218 G--DRMGFLTKLGFDVVEHTFIEKPSEESVQKVLKQFSEKVKQRKN-PYPVDGLVIVYED 274

Query: 309 FSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
                     G  A   R  ++ K+A++   ++L+ ++        +TPVA  EPV + G
Sbjct: 275 IQYASSGTVTGHHA--TRSGLAFKWADQSKLSKLIRVEWS-NAISTITPVAVFEPVELEG 331

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  A+L N    + L     +  GG ++       V +A  +IPKV+ ++        
Sbjct: 332 TTVQRASLANISECERLG----IGSGGTEVE------VIKANMIIPKVISVV-----KKV 376

Query: 426 QPFSFPSFCPIC----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                P+ CP+C    +  V      KT K   AH       C A+ L++   FVS+   
Sbjct: 377 GNLEIPTLCPVCGKPTKIHVSEISETKTLKCSNAH-------CPAKALKKYVRFVSKQGM 429

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+G+ +  L  F         I+   DI+ L+ R++     IEN+ GFG  S  N+  S
Sbjct: 430 DIDGISEATLSTFIAQG----WIQNYGDIYRLKDRKEA----IENLDGFGLKSAENILTS 481

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + K + +  ++F+F+L I  VG ++A  L + Y        E+  +      D+ S   +
Sbjct: 482 LEKAQVVRGDKFLFALSIPLVGIDVASRLLRVYP-----LMELITLAKEKELDFFS--HI 534

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G   ++A V + ++  N   +E LL  ++     H+ +  S ++    V TG +   
Sbjct: 535 DGIGPQKSEAFVRWMKDLNNQKEMEDLLSFLTIE-DLHKVSHDSVLDGLTFVVTGEVHYF 593

Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
           + R++ +E+++  G  V++++S  TD +I  D  +  SK  KA+ LG+ I++E  F+
Sbjct: 594 KNRNELKEWISARGGKVASVVSGSTDFLINNDIHSTSSKNAKAKSLGIPILSEADFM 650


>gi|291525249|emb|CBK90836.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Eubacterium rectale DSM 17629]
 gi|291529292|emb|CBK94878.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Eubacterium rectale M104/1]
          Length = 656

 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 183/718 (25%), Positives = 316/718 (44%), Gaps = 87/718 (12%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG---- 73
           + ++  L + ++     YY  +  I+ + E+DA+          F +L + E   G    
Sbjct: 7   KDKIDELVESLNRASKAYYNGADEIMPNYEWDAM----------FDELTQLEKETGYIRH 56

Query: 74  --PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P    G E      +  H  P LSL K  +IE+L+K+   +   W           L 
Sbjct: 57  DSPTQNAGYEAEAG-NREPHEYPALSLAKTKSIEELKKWAGDM-PIW-----------LS 103

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y+ G+ V    RG+G  G +++    AI   P+ +      +  VRGE 
Sbjct: 104 WKLDGLTLVLTYDGGRLVKILTRGNGTVGSNITFLQDAISGFPKEIPYKGHMV--VRGEA 161

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSE-I 249
            IS  DF  LND  I    + YANPRN ASG L   +  ++ R ++ F+   L    + I
Sbjct: 162 TISYTDFKLLND-TIEDDDEKYANPRNLASGTLNLDDVEEVKRRHVVFYAFTLVHIDDDI 220

Query: 250 FAKGQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            + G  + +  +  + F V        A     +  +  +++S R  +P  +DGLV   D
Sbjct: 221 ISWG--DRMSYLSDMKFNVVKREATDAAGLDEAVKRWTRDVESGRMDVP--VDGLVICYD 276

Query: 308 EFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           + +        G  A   R   + K+ ++   TRL  I+     + I +PVA  EPV I 
Sbjct: 277 DTAYAAGGSVTGHHA--TRAGFAFKWQDEAVDTRLRYIEWSCAVSTI-SPVAVFEPVQIE 333

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+L N   I+ L         G++  +     V +A ++IPK + +       D
Sbjct: 334 GTTVSRASLCNLTEIERLGV-------GKECTLS----VIKANKIIPKCIAV------KD 376

Query: 425 A-QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           A      P  CP+C       ++  +G  V    CT    C+A+ +++   FVS+   +I
Sbjct: 377 AVGAVEIPKECPVCHHPTRIFVSKNSG--VKTLHCTNP-DCTAKNVKKFSRFVSKSGMDI 433

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GL  Q +  F    +  F  + P DI+ L         KI ++ GFG+ S  N+  +I 
Sbjct: 434 DGLSVQTMLKFI---NEGFIKQFP-DIYHLPEHFD----KISSMEGFGEKSCMNMQTAIE 485

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K R++     IF+L I  +G +  + +    + +  FA  + N            + +  
Sbjct: 486 KSRHVHPVNLIFALCIPLIGTDAGKKIVN-AIGFDGFADRMRNAT--------DFVDIDG 536

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-Q 662
           +G   + +I+E+Y NP+N    EAL+KE+       +      +  K  V TG +     
Sbjct: 537 IGQEKSGSILEWYANPKNSAMFEALIKELDIEKVDIKDMSEGSLNGKTFVITGDVHDFAN 596

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R + + YV   G  V+  +S+KTD ++  D  +  SK +KA++LG+ I++E+ F+ + 
Sbjct: 597 RSEFKAYVESQGGKVTGSVSKKTDYLVNNDTESTSSKNKKAKELGIPIISEDTFIEMF 654


>gi|320537878|ref|ZP_08037793.1| DNA ligase, NAD-dependent [Treponema phagedenis F0421]
 gi|320145297|gb|EFW36998.1| DNA ligase, NAD-dependent [Treponema phagedenis F0421]
          Length = 648

 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 181/725 (24%), Positives = 317/725 (43%), Gaps = 111/725 (15%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I YH D YY     I  DSE+DAL          + +L   E  N     +  E +
Sbjct: 10  LEKLIRYHQDLYYNKEAEIP-DSEFDAL----------WDELRALEPENELFFTVPKESS 58

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               K +H IP  S EK  N E    +  ++  F Q        F ++ K+DG  + ++Y
Sbjct: 59  DGFPKASHIIPMGSQEKAANPEAFTAWALKM-PFTQ--------FLVQYKLDGASLELQY 109

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIP-TIPRVLSLNIPEIIE-----VRGEVYISKND 197
           E+G+FV A  RGDG  G+D++A +R +   +  +   + P   +     +RGEV ++K  
Sbjct: 110 ERGRFVRAVTRGDGKIGDDITANVRKMQGVVSELQGESAPAGAQPFSGGIRGEVLMTKE- 168

Query: 198 FLALNDEMIAVGRKPY---ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
                     + +K Y   AN RNAA+G+++R + +     L      +  + E    G 
Sbjct: 169 ----------IHKKFYADKANCRNAANGLMKRKDGSGSEHLLVICYDAVQGSPEKPFTGT 218

Query: 255 YEMLQKMRCLGFPVNNG-----VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK---- 305
                ++  L +   NG     ++  N+   ++ +   +  IR +LPYDIDGLV K    
Sbjct: 219 APFSTELEKLAWLKRNGFSTVEIQVCNSIQEVIDWRAHVMDIRESLPYDIDGLVIKNNLI 278

Query: 306 -VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDI-QIGRTGILTPVARLEPVNI 363
             D+ S       R R P   I+ KF+ ++A T L +++  + G T   TP+A  +PV +
Sbjct: 279 DPDDVS-------RPR-PEKQIAFKFSLEEAITTLREVEWSESGAT--YTPIAITDPVRL 328

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  A L N + I  +           ++++G +V++ + GE+IPK+  ++ N    
Sbjct: 329 AGTTVKRANLANPNMITDM-----------NLKIGSKVVITKRGEIIPKIETLVENTDEC 377

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
              P   P+ C  C S +   LN  T +L   +      AC      R++ +++    +I
Sbjct: 378 TEIP--MPTVCGTCGSSL---LNEGT-RLFCPNA-----ACPKLIHHRIEKWIA--TLDI 424

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
              G   +   F S      +    D++TL      +   + +I   G++S   ++ +++
Sbjct: 425 RDFGINLIQRLFDSN----KVNSIVDLYTL------TVEDLASIERMGEISAKKVHSALH 474

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            ++ ISLE FI    I  +G  +   L +            N +      D      V  
Sbjct: 475 AKKEISLETFIAGFDIDGIGVTMVEKLTQAGF---------NTLDKLFEADEQKFSTVYQ 525

Query: 604 VGDIIAQAIVEFYQNPRN--ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            G+++AQ +V   Q  +      +E     + P     E   ++ +      FTG L  I
Sbjct: 526 FGEVLAQNLVRGLQTLKAEMTALIEKGFIPIKPPAAPDE---NAPLHGMSFCFTGELTAI 582

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +R +A++ V + G  V + +++    ++    ++  +K +KAQQLG  I+ EE F  LLQ
Sbjct: 583 KRSEAEQLVKEKGGSVKSSVTKGLSYLVTNTPESGSAKNKKAQQLGTAIITEEAFFALLQ 642

Query: 720 QYNTT 724
           + + T
Sbjct: 643 KEHKT 647


>gi|238924576|ref|YP_002938092.1| DNA ligase, NAD-dependent [Eubacterium rectale ATCC 33656]
 gi|238876251|gb|ACR75958.1| DNA ligase, NAD-dependent [Eubacterium rectale ATCC 33656]
          Length = 656

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 183/718 (25%), Positives = 316/718 (44%), Gaps = 87/718 (12%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG---- 73
           + ++  L + ++     YY  +  I+ + E+DA+          F +L + E   G    
Sbjct: 7   KDKIDELVESLNRASKAYYNGADEIMPNYEWDAM----------FDELTQLEKETGYIRH 56

Query: 74  --PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P    G E      +  H  P LSL K  +IE+L+K+   +   W           L 
Sbjct: 57  DSPTQNAGYEAEAG-NREPHEYPALSLAKTKSIEELKKWAGDM-PIW-----------LS 103

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y+ G+ V    RG+G  G +++    AI   P+ +      +  VRGE 
Sbjct: 104 WKLDGLTLVLTYDGGRLVKILTRGNGTVGSNITFLQDAISGFPKEIPYKGHMV--VRGEA 161

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGK-TSEI 249
            IS  DF  LND  I    + YANPRN ASG L   +  ++ R ++ F+   L     +I
Sbjct: 162 TISYTDFKLLND-TIEDDDEKYANPRNLASGTLNLDDVEEVKRRHVVFYAFTLVHIDDDI 220

Query: 250 FAKGQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            + G  + +  +  + F V        A     +  +  +++S R  +P  +DGLV   D
Sbjct: 221 ISWG--DRMSYLSDMKFNVVKREATDAAGLDEAVKRWTRDVESGRMDVP--VDGLVICYD 276

Query: 308 EFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           + +        G  A   R   + K+ ++   TRL  I+     + I +PVA  EPV I 
Sbjct: 277 DTAYAAGGSVTGHHA--TRAGFAFKWQDEAVDTRLRYIEWSCAVSTI-SPVAVFEPVQIE 333

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+L N   I+ L         G++  +     V +A ++IPK + +       D
Sbjct: 334 GTTVSRASLCNLTEIERLGV-------GKECTLS----VIKANKIIPKCIAV------KD 376

Query: 425 A-QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           A      P  CP+C       ++  +G  V    CT    C+A+ +++   FVS+   +I
Sbjct: 377 AVGEVEIPKECPVCHHPTRIFVSKNSG--VKTLHCTNP-DCTAKNVKKFSRFVSKSGMDI 433

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GL  Q +  F    +  F  + P DI+ L         KI ++ GFG+ S  N+  +I 
Sbjct: 434 DGLSVQTMLKFI---NEGFIKQFP-DIYHLPEHFD----KISSMEGFGEKSCMNMQTAIE 485

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K R++     IF+L I  +G +  + +    + +  FA  + N            + +  
Sbjct: 486 KSRHVHPVNLIFALCIPLIGTDAGKKIVN-AIGFDGFADRMRNAT--------DFVDIDG 536

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-Q 662
           +G   + +I+E+Y NP+N    EAL+KE+       +      +  K  V TG +     
Sbjct: 537 IGQEKSGSILEWYANPQNSTMFEALIKELDIEKVDIKDMSEGSLNGKTFVITGDVHDFAN 596

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R + + YV   G  V+  +S+KTD ++  D  +  SK +KA++LG+ I++E+ F+ + 
Sbjct: 597 RSEFKAYVESQGGKVTGSVSKKTDYLVNNDTESTSSKNKKAKELGIPIISEDTFIEMF 654


>gi|282858246|ref|ZP_06267432.1| NAD-dependent DNA ligase domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588955|gb|EFB94074.1| NAD-dependent DNA ligase domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 678

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 187/734 (25%), Positives = 322/734 (43%), Gaps = 96/734 (13%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   K + +L  +++   D YY      + D E+DA   R  A+     ++     PN P
Sbjct: 3   EDKHKIMEALVLQLNEASDAYYNGKGEAMTDFEWDAAFDRLKALEEELGEVL----PNSP 58

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEP 132
            N +  +  L   K  H  P LSL K  +  +L K+     I+  W              
Sbjct: 59  TNSVSAD-KLKGQKEEHEYPALSLAKTKSETELAKWAEERPIWLSW-------------- 103

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y+ GK      RG+GH G +++    AI  I   +  N    I +RGE  
Sbjct: 104 KLDGLTLVVTYDNGKLTKVVTRGNGHIGTNITHLAAAIDNILPTVKANGH--IVIRGEAV 161

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT-SEIF 250
           IS  DF   N E      + YANPRN ASG L   +  ++  R+L +    L  T  EI 
Sbjct: 162 ISYADFEQFNLE----SEEEYANPRNLASGSLTLKDINEVKARHLRWIPFSLVHTDEEII 217

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQ------ANTFHGIVSYYN---EMKSIRSTLPYDIDG 301
           + G  + +  +  LGF  N   R+      A     +++ +       + +   PY +DG
Sbjct: 218 SWG--DRMAFLDKLGF--NTVERELITLPTAENIEKVIATWTLRVTDTTRKDKQPYPVDG 273

Query: 302 LVYKVD--EFSLQKQL-GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           LV   D  E++    + G  A   R   + K+ ++   T L  I+     T  ++PVA  
Sbjct: 274 LVITYDDTEYAATGSVTGHHAT--RAGFAFKWQDESVETTLEYIEWSCA-TSTISPVAVF 330

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV + G  +  A+L N    + L        G  D   G +++V +A ++IPKV+ +  
Sbjct: 331 KPVELEGTTVKRASLCNISECERL--------GIGD--AGTKLMVIKANKIIPKVISVT- 379

Query: 419 NERHPDAQPFSFPSFCPICQ--SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
                    F+ P+ CP+C   +++V      T  L     CT    C A+QL++   FV
Sbjct: 380 ----ECLGSFTIPTTCPVCHQPTQIVESEASGTRTL----HCTNH-HCPAKQLKKFARFV 430

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           S++  NI+GL +Q +  F         +   AD+F LQ + +     ++ + GFG+ S  
Sbjct: 431 SKEGINIDGLSEQTVQKFIN----LGWVSEYADLFHLQEKAEA----LKYMEGFGEKSCD 482

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------- 589
           NL  +I K R +  ++ +F+L I  VG ++   L   Y   +   +   N+++       
Sbjct: 483 NLLTAIEKSRKVEAKQLLFALSIPLVGKDVCTRLLSAYPLEELINKSRENMVSPTLQRSL 542

Query: 590 -----HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
                 NN++  S I    +G   + + V + Q+  N   ++ LL+E++ S    E    
Sbjct: 543 FEEPRPNNEEIFSTIDG--IGPEKSASFVGWMQDDSNYAQLQRLLQELTVSQTSSEPK-G 599

Query: 645 SEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKA 701
           +  +    V TG +   + R++ + Y+   G  V+  +S+ T  +I  D  +   K +KA
Sbjct: 600 NLCQGLTFVITGDVHHYKNRNELKAYIESEGGKVTGSVSKSTHYLINNDVKSTSGKNKKA 659

Query: 702 QQLGVKIMNEEQFL 715
           ++L + I++E+ F+
Sbjct: 660 KELNIPILSEDDFM 673


>gi|291529755|emb|CBK95341.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Eubacterium rectale M104/1]
          Length = 709

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 192/755 (25%), Positives = 324/755 (42%), Gaps = 107/755 (14%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PNGP 74
           +  L  +++   + YY     I+ + E+D +          F  LA+ E+      P+ P
Sbjct: 7   MKELVNKLNEASNAYYNGKDEIMSNHEWDTM----------FDQLAQLEEETGIILPDSP 56

Query: 75  LNKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            +K+G +      L KV H  P LSL+K  +I +  K  ++         D  +      
Sbjct: 57  TSKVGADEIGGNGLKKVRHEFPALSLDKTKDIYEFPKVFSK-----AASGDCVVMH---- 107

Query: 133 KIDGTMITIRYEK------GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           K+DG  + + Y+       G+ V A  RG+G  G D++     I  IP  +      I  
Sbjct: 108 KLDGCTLCLTYDGSRNGGCGRLVQAVTRGNGEIGSDMTYQASYIEGIPMTIGFKGKLI-- 165

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           VRGE  ++ ++F  +N  +   G + Y+NPRN A+  +    P    R + F    L   
Sbjct: 166 VRGEALMTYSEFERINSNL-EEGEEEYSNPRNLANSTITMKEPGLKGRKVIFKAFKL-VY 223

Query: 247 SEIFAKGQYEM-------LQKMRCLGFPV----------NNGVRQANTFHGIVSYYNEMK 289
            E  A  + E+       L  +  LGF V          +N    ++    I++  N   
Sbjct: 224 MEPAADDKIEVPATFFGALTLLERLGFGVVEHELARAYSSNPDVDSDLPDQIINVMNSFS 283

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM--ISHKFAEKQASTRLLDIDIQIG 347
               TL Y +DGLV   D++     L      P  +   + K+A++   T L +I+    
Sbjct: 284 DRVETLDYPVDGLVVASDDYKTADALPVTGHHPNRLTGFAFKWADECVETTLREIEWSPS 343

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG + PVA  +PV + G  +T A++HN   +K L            +RVGD++ V +A 
Sbjct: 344 RTGRINPVAVFDPVQLEGTTVTRASVHNVSIVKKL-----------RLRVGDKISVFKAN 392

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           ++IP  +D  +          S    CP+C       +     + V    CT    C+ +
Sbjct: 393 KIIP-CIDKNLTPGDELTYAESHACTCPVCGMETSPMITHSGDRDVEVEMCTNP-NCAVK 450

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
           Q+++  HF  RD  +I GL ++ L+ F +     F I+  AD++    R  T    I  +
Sbjct: 451 QVKKFVHFCERDCMDIVGLSEKTLEKFIEK---GF-IKQLADLY----RLDTFERNIAAM 502

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL-SYQNFAQEINN 586
            GFG  S  N++ SI   R  +   FI +LGI  VG   A+   K Y  + + F  ++ N
Sbjct: 503 DGFGQKSYDNIWKSIQISRKTTFVPFIHALGIPMVGKGQAKLFDKAYKGNVKKFFNDVYN 562

Query: 587 ------------IIAHNNDDWLS--LIRVPLVGDIIAQAIVEFYQNPRNICAVEA--LLK 630
                        I  +  DW S  L  +P   D++ +         R  C  E   LL+
Sbjct: 563 RKTFTDIDGIGEKIELSLWDWGSRYLGWIPFEKDLLDEM-------RRTSCNTEVYDLLR 615

Query: 631 EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDI 687
            +   I   E NV+ +  +  K  V TG++   + R + Q  + +LG   +  +++KT  
Sbjct: 616 WIDVEI-PAEANVAGKDILSGKTFVITGSVNHFKNRAELQAKIEELGGKATGSVTKKTSY 674

Query: 688 IIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +I  D  +   K +KA++LGV I++E++FL ++ +
Sbjct: 675 LINNDVESTSGKNKKAKELGVPIISEDEFLEMIGE 709


>gi|255018737|ref|ZP_05290863.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL F2-515]
          Length = 223

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/226 (39%), Positives = 137/226 (60%), Gaps = 14/226 (6%)

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHG 242
           IEVRGE ++ K  F  LN+     G+  +ANPRNAA+G LR+L+ T I  +R L+ F++ 
Sbjct: 10  IEVRGEAFMPKRSFQKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYA 68

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +    E+  +     L+ +  LG  VN   R  ++   + +Y +E    R+ L YDIDG+
Sbjct: 69  VADFGEMGVETHSAGLEMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGI 128

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K++    Q+Q+G   +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV 
Sbjct: 129 VLKLNNLEQQRQMGTTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVR 188

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           + G  ++ A+LHNED I             +DIR+GD VL+K+AG+
Sbjct: 189 VAGTTVSRASLHNEDLIT-----------EKDIRIGDTVLIKKAGD 223


>gi|315608256|ref|ZP_07883246.1| NAD-dependent DNA ligase LigA [Prevotella buccae ATCC 33574]
 gi|315250037|gb|EFU30036.1| NAD-dependent DNA ligase LigA [Prevotella buccae ATCC 33574]
          Length = 662

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 181/717 (25%), Positives = 314/717 (43%), Gaps = 82/717 (11%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R+++    + ++   D YY     ++ D E+DAL  R   +     +      P+ P
Sbjct: 3   EDKRQQMRQFVERLNAASDAYYNGQPELMTDYEWDALFDRLRQLEEETGETL----PDSP 58

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEP 132
             K+  + ++   K  H  P LSL K    E+L K+     I+  W              
Sbjct: 59  TAKVSAD-DVKGQKEEHEFPALSLAKTKRPEELVKWAEGRPIWLSW-------------- 103

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +   Y+ G+      RG+GH G +++   +AI  +P  +      +I  RGE  
Sbjct: 104 KLDGLTLVATYDGGRLTKVVTRGNGHIGTNITHLAQAINGLPARIKSAGHTVI--RGEAV 161

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT-SEIF 250
           IS  DF   N E      + YANPRN ASG L   +  +I  R++ +    L  T  EI 
Sbjct: 162 ISYEDFERFNME----SDEEYANPRNLASGSLTLKDVNEIKQRHIRWIPFTLVYTDEEID 217

Query: 251 AKGQYEMLQKMRCLGF-PVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           A G+   +  +   GF PV   +    T      +++ + E  + R   PY +DGLV   
Sbjct: 218 AWGK--RMDWLEANGFKPVERELIANPTLEEVETVIARWTEKVTHRIN-PYPVDGLVISY 274

Query: 307 DEFSLQKQLGERAR-SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           D+ +           + R  ++ K+ ++ A T L  ++     T  ++PVA   PV + G
Sbjct: 275 DDTAYAATGAVTGHHATRAGLAFKWQDEAAETELDHVEWSCA-TNTISPVAVFRPVELEG 333

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  A+L N    + L   G           G R+ V +A ++IPKV+ +I        
Sbjct: 334 TTVKRASLCNISECRRLGIGGS----------GTRLSVIKANKIIPKVIKVIET-----V 378

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F  P  CP+C +     ++  +        CT   AC A+QL++   FVS++A NI+G
Sbjct: 379 GEFDIPGKCPVCCAPTEISISGMSD--TETLHCTND-ACPAKQLKKFTRFVSKEAMNIDG 435

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           + +Q L  F         +   AD++ L+  Q+    ++  + GFG+ S  N+  S+ K 
Sbjct: 436 ISEQTLAKFIN----LGWVGEYADLYHLREHQR----ELAGLEGFGERSAANIMASVEKS 487

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY--LSYQNFAQEINNI--IAHNNDDWLSLIRV 601
           R+    R +F+L I   GA++ + L   Y      + A+ + N+   AH          +
Sbjct: 488 RDAEAHRLLFALSIPLCGADVCKRLLSAYPLADLLSTARTVENLDHFAH----------I 537

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           P +G   + + + + ++  N   V+ LL E+  S    E    ++      V TG +   
Sbjct: 538 PGIGPEKSASFINWNRSQANQQLVDHLLCEIRVS-QVSEVPQGNKCAGLTFVITGDVYHF 596

Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
           + R++ + Y+   G  V+  +S  T  +I  D  +   K +KA+ LG++I++E+ F+
Sbjct: 597 KNRNELKSYIESEGGKVAGSVSGATSFLINNDVESTSGKNKKAKLLGIEIISEDDFI 653


>gi|213421985|ref|ZP_03355051.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 186

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/203 (41%), Positives = 129/203 (63%), Gaps = 21/203 (10%)

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++NATLHN D I+ 
Sbjct: 1   PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 60

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
           L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  FP+ CP+C S V
Sbjct: 61  L-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDV 109

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R      G+ V   RCTGGL C AQ+ E LKHFVSR A +++G+G + +D   + E   
Sbjct: 110 ER----VEGEAVT--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVERE--- 160

Query: 502 FSIRIPADIFTLQRRQQTSTTKI 524
             +  PAD+F L   + T   ++
Sbjct: 161 -YVHTPADLFRLTAGKLTGLDRM 182


>gi|42527046|ref|NP_972144.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405]
 gi|81412203|sp|Q73MH0|DNLJ_TREDE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|41817470|gb|AAS12055.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405]
          Length = 645

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 173/720 (24%), Positives = 325/720 (45%), Gaps = 100/720 (13%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN- 76
            K +  LE+ I  H D YY  ++P I D+E+DAL     A+           DP   L  
Sbjct: 4   EKRILDLEKTIKKHQDLYYN-AQPEISDAEFDALWDELKAL-----------DPQNKLFF 51

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
            +  E      K  H IP  S EK  +      +  ++  F +        + ++ K+DG
Sbjct: 52  TVPLESTEGFAKSEHIIPMGSQEKAADPPSFEAWALKM-PFKE--------YIVQYKMDG 102

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + ++YE+G FV A  RGDG  G+D++  +  +  + + +++N        G  Y +K 
Sbjct: 103 ASLELQYEEGHFVRAVTRGDGKIGDDITENVLKMKGLIKDITVN-------AGPAYGTKP 155

Query: 197 DFLALNDEMIAVGR------KPYANPRNAASGILRRLNPTDITRYLNFFVH-----GLGK 245
               +  E+I +        K  AN RNAA+G++++ N  ++  +LN F +      +G+
Sbjct: 156 FSGGIRCEVIMLRSIHQKYFKDKANCRNAANGLMKKKN-GELCEHLNLFAYDAVQGSIGR 214

Query: 246 --TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             T +   K + E L  ++  GF     V+   +   ++ Y   +  IR +L YDIDGLV
Sbjct: 215 PFTGDAPFKTESEKLVWLKKAGFNCVE-VKYCKSIAEVIEYRAHVMDIRPSLDYDIDGLV 273

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDI-QIGRTGILTPVARLEPVN 362
            K D  ++  +  +RAR P   I+ KF+ ++A T L +I+  + G T   TP+A +EPV 
Sbjct: 274 IKND--TIDPEDMKRAR-PEKQIAFKFSLEEAVTVLKEIEWSESGAT--YTPIALIEPVR 328

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+L N + IK L           ++++G RV+V + GE+IPK+  +   E  
Sbjct: 329 LAGTTVKRASLANPNIIKAL-----------NLKIGSRVVVTKRGEIIPKIEALA--ENP 375

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P+ +   +P  C +C S +  +                 ++C      R++ ++S    +
Sbjct: 376 PNVKEIEYPDTCSVCGSPLTNE---------GTRLYCPNMSCPKLIHHRIEKWIS--VLD 424

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I   G   +   F+       +    D++TL   +  +  ++      G +S   +Y ++
Sbjct: 425 IRDFGITLIKRLFE----MGRVNSITDLYTLTVEELAAIDRM------GKLSAEKVYKAL 474

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           + ++ ISL  FI    I  +G  +   L +   +      ++N ++  +  D+ ++ +  
Sbjct: 475 HSKKEISLTEFIAGFDIEGIGETMVEKLEEAGFN------DLNELLGASEADFANVYQ-- 526

Query: 603 LVGDIIAQAIVEFYQNPRN--ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
             G +++  +V      ++     ++    ++ P +   E  V   ++     FTG L  
Sbjct: 527 -FGQVLSHTLVTNLSILKDEMTGLIDKGYIKIKPPLTSEEGAV---LKGLSFCFTGELNT 582

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++R +A+  V + G  V + + +    ++    D+  SK +KAQ+LG  I+ EE FL L+
Sbjct: 583 MKRAQAEALVKEKGGTVKSSVVKGLSYLVTNTPDSGSSKNKKAQELGTAIITEEAFLNLI 642


>gi|309800538|ref|ZP_07694688.1| DNA ligase [Streptococcus infantis SK1302]
 gi|308115831|gb|EFO53357.1| DNA ligase [Streptococcus infantis SK1302]
          Length = 315

 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 167/310 (53%), Gaps = 15/310 (4%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY    P + DSEYD L R    +  A PD      P  P +++GG++     K +H  P
Sbjct: 19  YYTSDNPSVSDSEYDRLYRELVELEKARPDQVL---PESPTHRVGGKILDGFEKYSHQYP 75

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL+  ++ E+L  F  R+     +K+ + + +  E KIDG  I++ YE+G FV  A R
Sbjct: 76  LYSLQDAFSREELDAFDARV-----RKELDDVTYICELKIDGLSISLTYEQGIFVAGATR 130

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212
           GDG  GE+++  ++ +  IP    L++PE ++  VRGE Y+ +  F  +N      G   
Sbjct: 131 GDGSIGENITENLKRVKDIP----LSLPEKLDITVRGECYMPRVSFDQVNQSRQENGEPE 186

Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           +ANPRNAA+G LR+L+ T +    N       + S      Q ++L+ +  LGF VN   
Sbjct: 187 FANPRNAAAGTLRQLD-TAVVAKRNLATFLYQEASPSTRDSQEKVLKHLEQLGFVVNQRR 245

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
             A++   + ++  E+   R  LPYDIDG+V K+++ + Q+QLG   ++P+W +++KF  
Sbjct: 246 LLAHSMDEVWTFIQEIGRERDQLPYDIDGVVIKINDLAGQEQLGFTVKAPKWAVAYKFPA 305

Query: 333 KQASTRLLDI 342
           ++   +LL +
Sbjct: 306 EEKEAKLLSV 315


>gi|313618396|gb|EFR90422.1| DNA ligase [Listeria innocua FSL S4-378]
          Length = 303

 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 171/323 (52%), Gaps = 40/323 (12%)

Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
           L+K+AG++IP+V+  I  ER+   +PF  P  CP C S +VR L  +      A RC   
Sbjct: 1   LIKKAGDIIPEVIKSITEERNGSEKPFHMPKNCPTCDSELVR-LEEEV-----ALRCINP 54

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C AQ  E L HFVSR+A NI+GLG++ +   F        I+  AD+F L + +    
Sbjct: 55  -KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLF----SMHLIKDVADLFFLSKEKLLEL 109

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            ++      G+ SVTNL  SI   +  SLE+ +F LGIRHVGA+ A+SLA ++ +  N  
Sbjct: 110 ERM------GEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKSLAVHFETMDNLK 163

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------ 635
                 +   ND          +G+ +A +IV ++ N      V  LL+E+  +      
Sbjct: 164 IADKETLTSIND----------IGEKMADSIVTYFANEE----VHDLLEELKRAGVNMTY 209

Query: 636 IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
            G   +N+S E      K +V TG L+K+ R+ A+  +  LG  VS  +S+KTD+++ G 
Sbjct: 210 TGPKLENMSEEELVFAGKTVVLTGKLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGS 269

Query: 693 NPGSKLEKAQQLGVKIMNEEQFL 715
           + GSKL KA++L + I +EE  +
Sbjct: 270 DAGSKLAKAEELAIPIWSEEDLI 292


>gi|303237245|ref|ZP_07323815.1| NAD-dependent DNA ligase domain protein [Prevotella disiens
           FB035-09AN]
 gi|302482632|gb|EFL45657.1| NAD-dependent DNA ligase domain protein [Prevotella disiens
           FB035-09AN]
          Length = 655

 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 194/707 (27%), Positives = 305/707 (43%), Gaps = 100/707 (14%)

Query: 33  DCYYQYSKPIILDSEYDA----LKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           + YY     I+ D E+DA    LK   +      PD   S   N   + I GE      K
Sbjct: 21  NTYYNGQNEIMSDHEWDAAFDELKHLEEETGTILPD---SPTANVSADSIAGE------K 71

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
             H    LSL K     DL K+     I+  W              K+DG  + + Y+KG
Sbjct: 72  EEHEFAALSLAKTKKTTDLLKWAEEKPIWISW--------------KLDGLTLVVTYDKG 117

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE-----VRGEVYISKNDFLAL 201
           K      RG+GH G +++    AI  I       +P I +     +RGE  IS +DF   
Sbjct: 118 KLSKVVTRGNGHIGTNITHLAPAIAGI-------LPTITDKGHVVIRGEAIISYSDFNVF 170

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           N E      + YANPRN ASG L   N  T   R+L++    L  + E F     +M   
Sbjct: 171 NMET----GEEYANPRNLASGSLTLKNIETLKERHLHWIPFTLVYSDEPFNSWGAQM-DY 225

Query: 261 MRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ---LG 316
           +  LGF  V +          I +         ++  Y +DGLV   D+ +        G
Sbjct: 226 LTKLGFKTVEHEAINVPNIENIDATIENWTHKLNSFDYPVDGLVICFDDIAYATTGSVTG 285

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A   R   + K+ ++ A T L  I+     + I +PVA  +PV + G  +  A+L N 
Sbjct: 286 HHAT--RGGYAFKWQDESAETELEYIEWSCAASTI-SPVAVFKPVELEGTTVKRASLCNI 342

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
              + L   GK          G ++ V +A ++IPKV++++  E        S P+ CP+
Sbjct: 343 SECERLGIGGK----------GTKISVIKANKIIPKVIEVLQTE-----GKLSIPTECPV 387

Query: 437 CQS--RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           C+S   VV   + +T  L     CT    C+A++L++   FVS++  NI+GL +Q L  F
Sbjct: 388 CKSPTEVVVSSSSETKTL----HCTNP-NCAAKELKKFVRFVSKEGVNIDGLSEQTLQKF 442

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    I   ADIF L   +  +  KI  + GFGD SV NL  +I+K + +  +  +
Sbjct: 443 IN----LGWINQYADIFHLH--EHANDLKI--MEGFGDKSVLNLLRAIDKAKIVEAKNLL 494

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           FSL I  VG ++   L    LS   F + I  + A    D      +  +G   + + + 
Sbjct: 495 FSLSIPLVGQDVCSRL----LSAYPFNELI--MKARLATDSAEFSNIAGIGPEKSASFIA 548

Query: 615 FYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
           + Q   NI  +  LL E+    P +    K + +       V TG +   + R + + Y+
Sbjct: 549 WIQAEENIKRLNNLLVELKITQPVV----KEIGTRCNGLTFVVTGDVHHYKNRSELKAYI 604

Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
              G  V+  +S+ T+ +I  D  +   K +KA+Q  + I++E++F+
Sbjct: 605 ESQGGKVTGSVSKSTNYLINNDVNSTSEKNKKARQFEIPIISEDEFV 651


>gi|281358582|ref|ZP_06245061.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548]
 gi|281314930|gb|EFA98964.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548]
          Length = 626

 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 190/699 (27%), Positives = 309/699 (44%), Gaps = 118/699 (16%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           I YH+  Y+   +P I D+ YD L R   A+    PD         P     G       
Sbjct: 20  IEYHNRRYWDEGEPEIPDARYDELIR---ALQKLEPDHELVTRVYAPAVAGSG------- 69

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           KV H  P LSL+K +++E++ ++  +   F + +D+      +EPK DG  I+  ++ G+
Sbjct: 70  KVRHLRPMLSLDKAYSLEEVLEWAKK---FARSEDEE---LLVEPKYDG--ISANFD-GR 120

Query: 148 FVYAALRGDGHSGEDVSACIRAIP--TIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
            +  + RGDG  GE+++  +  +   T      ++ P    VRGE+ I  +DF  L   +
Sbjct: 121 VL--STRGDGELGENITDKLPLVELETAGHTGKVDRP----VRGELVIRDDDFKTLYSHI 174

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
              G   Y N RNA +GI+                 GL + +E+  +G    L     + 
Sbjct: 175 RKKGGGVYKNSRNAVAGIM-----------------GLKEIAEMELQGAKITLVDYNLVS 217

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F V         +  + + + E++     LPY  DG+V K+ + +    LG  A  PR  
Sbjct: 218 FRVK--------YSELAAKWEELRRQLEALPYPQDGIVIKLADSAYSASLGNTAHHPRGE 269

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I+ KF   +  TRL+ ++   G+   LTPVA LEPV I G  I  ATLHN   I  L   
Sbjct: 270 IAFKFTNIRRETRLIGVEWSFGKN-CLTPVAELEPVEISGTTIRRATLHNIQNILEL--- 325

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE--RHPDAQPFSFPSFCPICQSRVVR 443
                    +++GD V V+RAG+VIP +V     E  R P          CP C +++VR
Sbjct: 326 --------GVQIGDTVTVERAGDVIPYIVSSTPGEERRSP------LIEDCPSCGAKLVR 371

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
                         C     C   QL+RL   V      IE LG+  L    ++      
Sbjct: 372 R---------GPELCCPNPECPETQLQRLAAAVRN--LGIERLGEPTLRKLMENS----G 416

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           +R   D+F L      +   +  + GF   S  NL + I K R ++  + + +L I ++G
Sbjct: 417 VRHLGDLFEL------TAMDLLRLDGFAAKSAANLIEEIQKARIVNDYQLLAALNIPNIG 470

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
           A +    AK   S+ +FA      +   +++ LS I  P +G   A+A+V        + 
Sbjct: 471 ANV----AKVIFSHTDFAG-----LRRMSEEELSAI--PGIGPERAKALVS------ELA 513

Query: 624 AVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
           A    L E+  ++   H    ++EI    + FTG + + +R   ++  T  G   +  ++
Sbjct: 514 AQSEYLDELLGAVRLIHAAAPAAEIPT--VCFTGKMPE-KRSYYEKLATAHGYRSADDVT 570

Query: 683 RKTDIIIVGD---NPGSKLEKAQQLGVKIMNEEQFLFLL 718
               +++  D   N G KL+KA +LGVK+++ ++FL +L
Sbjct: 571 SSLSLLVAADPAENSG-KLKKAARLGVKVVSLDEFLSML 608


>gi|288925794|ref|ZP_06419725.1| DNA ligase [Prevotella buccae D17]
 gi|288337449|gb|EFC75804.1| DNA ligase [Prevotella buccae D17]
          Length = 654

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 179/699 (25%), Positives = 306/699 (43%), Gaps = 82/699 (11%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
           D YY     ++ D E+DAL  R   +     +      P+ P  K+  + ++   K  H 
Sbjct: 13  DAYYNGQPELMTDYEWDALFDRLRQLEEETGETL----PDSPTAKVSAD-DVKGQKEEHE 67

Query: 93  IPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
            P LSL K    E+L K+     I+  W              K+DG  +   Y+ G+   
Sbjct: 68  FPALSLAKTKRPEELVKWAEGRPIWLSW--------------KLDGLTLVATYDGGRLTK 113

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
              RG+GH G +++   +AI  +P  +      +I  RGE  IS  DF   N E      
Sbjct: 114 VVTRGNGHIGTNITHLAQAINGLPARIKSAGHTVI--RGEAVISYEDFERFNME----SD 167

Query: 211 KPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT-SEIFAKGQYEMLQKMRCLGF-P 267
           + YANPRN ASG L   +  +I  R++ +    L  T  EI A G+   +  +   GF P
Sbjct: 168 EEYANPRNLASGSLTLKDVNEIKQRHIRWIPFTLVYTDEEIDAWGK--RMDWLEANGFKP 225

Query: 268 VNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR-SPR 323
           V   +    T      +++ + E  + R   PY +DGLV   D+ +           + R
Sbjct: 226 VERELIANPTLEEVETVIARWTEKVTHRIN-PYPVDGLVISYDDTAYAATGAVTGHHATR 284

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
             ++ K+ ++ A T L  ++     T  ++PVA   PV + G  +  A+L N    + L 
Sbjct: 285 AGLAFKWQDEAAETELDHVEWSCA-TNTISPVAVFRPVELEGTTVKRASLCNISECRRLG 343

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
             G           G R+ V +A ++IPKV+ +I          F  P  CP+C +    
Sbjct: 344 IGGS----------GTRLSVIKANKIIPKVIKVIET-----VGEFDIPGKCPVCCAPTEI 388

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
            ++  +        CT   AC A+QL++   FVS++A NI+G+ +Q L  F         
Sbjct: 389 SISGMSD--TETLHCTND-ACPAKQLKKFTRFVSKEAMNIDGISEQTLAKFIN----LGW 441

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           +   AD++ L+  Q+    ++  + GFG+ S  N+  S+ K R+    R +F+L I   G
Sbjct: 442 VGEYADLYHLREHQR----ELAGLEGFGERSAANIMASVEKSRDAEAHRLLFALSIPLCG 497

Query: 564 AEIARSLAKYY--LSYQNFAQEINNI--IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           A++ + L   Y      + A+ + N+   AH          +P +G   + + + + ++ 
Sbjct: 498 ADVCKRLLSAYPLADLLSTARTVENLDHFAH----------IPGIGPEKSASFINWNRSQ 547

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVS 678
            N   V+ LL E+  S    E    ++      V TG +   + R++ + Y+   G  V+
Sbjct: 548 ANQQLVDHLLCEIRVS-QVSEAPQGNKCAGLTFVITGDVYHFKNRNELKSYIESEGGKVA 606

Query: 679 AILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
             +S  T  +I  D  +   K +KA+ LG++I++E+ F+
Sbjct: 607 GSVSGATSFLINNDVKSTSGKNKKAKLLGIEIISEDDFI 645


>gi|212374934|pdb|3BAC|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
           Dependent Dna Ligase
          Length = 270

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/264 (37%), Positives = 153/264 (57%), Gaps = 18/264 (6%)

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLEPKIDGTMITI 141
           ++ H IP LSL+  ++  +   F+ RI       +D  I       F  EPK+DG  ++I
Sbjct: 9   QIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCEPKLDGLAVSI 61

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLA 200
            Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV++    F  
Sbjct: 62  LYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGFER 121

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEM 257
           LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    +      Y  
Sbjct: 122 LNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEGVGLPTTHYAR 180

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +LQ +LG 
Sbjct: 181 LQWLKSIGIPVNPEIRLCNGADEVLDFYQDIQNKRSSLGYDIDGTVLKINDIALQNELGF 240

Query: 318 RARSPRWMISHKFAEKQASTRLLD 341
            +++PRW I++KF  ++  T L D
Sbjct: 241 ISKAPRWAIAYKFPAQEELTLLND 264


>gi|256062935|ref|XP_002570360.1| DNA ligase NAD-dependent [Schistosoma mansoni]
 gi|227294819|emb|CAY18406.1| DNA ligase, NAD-dependent, putative [Schistosoma mansoni]
          Length = 311

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 136/216 (62%), Gaps = 21/216 (9%)

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVD+  LQ+ LG  AR+PRW +++KF  ++ASTRL  I+ Q+GRTG LTPVARL PV
Sbjct: 1   MVVKVDDRRLQQDLGFVARAPRWAVAYKFPAQEASTRLEAIEWQVGRTGALTPVARLAPV 60

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           ++GG +++NATLHN D +  L           D+R GD V++ RAG+VIPKV+  + ++ 
Sbjct: 61  SVGGVVVSNATLHNIDEVHRL-----------DLRAGDTVVIYRAGDVIPKVMRRLDDDG 109

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
           H    P + P  CP+C S VVR      G++VA  RC+ GL C AQ+ E L+HF SR A 
Sbjct: 110 HAARAPVALPDACPVCASAVVR----PEGEVVA--RCSAGLFCPAQRKEALRHFASRRAM 163

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517
           +IEGLG++ +D        A  +  PADI+ L   Q
Sbjct: 164 DIEGLGEKWVDLMVD----AGLLHTPADIYRLSAEQ 195


>gi|242279308|ref|YP_002991437.1| DNA ligase (NAD(+)) [Desulfovibrio salexigens DSM 2638]
 gi|242122202|gb|ACS79898.1| DNA ligase (NAD(+)) [Desulfovibrio salexigens DSM 2638]
          Length = 614

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 175/713 (24%), Positives = 306/713 (42%), Gaps = 126/713 (17%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNK 77
           KE+  L   +  H++ Y +   P I D+ YD L  +            R  DP  P L  
Sbjct: 6   KEIKDLVALLEKHNEAYRR-GMPTISDARYDELTEQL-----------RDLDPENPFLTN 53

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +  E      +V H  P LS EK +  E+L +F++R+ +  +      + + + PK+DG 
Sbjct: 54  VEPENFSEKVEVRHPRPMLSTEKAYTTEELERFVSRVEKEAKAMGIKEVTYRITPKLDG- 112

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIR--AIPTIPRVLSLNIPEIIEVRGEVYISK 195
            +  R +   F   A RG+G  G ++S+      +    R   +         GE+  S 
Sbjct: 113 -LAARDDGKVF---ATRGNGEVGYEISSAFTKGVVAVGGRGQGV---------GEIVCSL 159

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F    DE +A     + +PRN   GI+                     TS+   +   
Sbjct: 160 EYF----DEHLA---NSFEHPRNMVVGII---------------------TSDKVNEASK 191

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK-SIRSTLPYDIDGLVYKVDEFSLQKQ 314
           + LQ       P +   ++      +VS   E+   +     Y +DG+V +V + +LQ++
Sbjct: 192 QALQDEAVRFVPYSTLPKKVVNGEELVSRVWEITDELWEAADYPLDGMVAEVTDTALQER 251

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A   RW I+ K   + A T +  I  Q+GR G +TPV  ++PV++ GA I N T H
Sbjct: 252 LGATAHHYRWQIAIKKKGESAVTEVEGIRWQVGRMGAVTPVMEVKPVSVSGATIRNVTAH 311

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   ++            + I +G  + + R+GEVIPK+ ++I       AQ    P+ C
Sbjct: 312 NAGMLR-----------DQSIGIGATIRIIRSGEVIPKLEEVI-----KPAQEVELPAEC 355

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +    +          +C    +C A+  +RL+++  +   N +  GK+ +   
Sbjct: 356 PSCGAELFWQND--------FLKCP-DFSCPARVEQRLEYWF-KTLGNADWFGKKTIAKL 405

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS--INKRRNISLER 552
            K+   +        ++T+              LGFG V  TNL ++  I+K +     R
Sbjct: 406 VKAGHNSLE-----SVYTMAEDDFQK-------LGFGPVQSTNLAEALYISKTKETDDWR 453

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+ + GI  +G   +R L  Y+        ++ +++    +    LI +   GDI + ++
Sbjct: 454 FLAAFGIPDLGKADSRKLLGYF--------KLEDVVNVKQE---QLIELHGFGDITSHSV 502

Query: 613 VEFYQNPRNICAVEALLKEV---------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            E       I A++  +  +         +P +   E ++ S I  K +VFTG +++  R
Sbjct: 503 TE------GIAAIKETILHMLEFDFNLRRTPLVSETE-SMESPITGKGIVFTGKMEQGSR 555

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFL 715
              Q    +LGA V   ++ KTD ++ G   G+ K+E A+  GV+IM E +F+
Sbjct: 556 EDMQAMARRLGAKVQTSVTGKTDFLVCGSKVGAKKIESAKAKGVEIMKESEFM 608


>gi|167461915|ref|ZP_02327004.1| NAD-dependent DNA ligase LigA [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 363

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 184/363 (50%), Gaps = 23/363 (6%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +EI+ H+  YY   +P I D EYDAL  R   +       + +  PN P  ++GG++ 
Sbjct: 11  LIEEINKHNYHYYTLDEPTITDQEYDALYDRLLKLEKE----SGTVLPNSPTLRVGGDIL 66

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDNSIF----FTLEPKIDG 136
                  H     SL+K  +IE L+ +  R+ +    +  K+ ++      F +E K DG
Sbjct: 67  KGFEPHRHRSRLWSLDKAQSIEVLKNWHNRVQKLVNDYNSKNPSTPLPEPSFAVELKFDG 126

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE---IIEVRGEVYI 193
             I + Y++G  V A+ RG+G  GE + A ++ I ++P    L IP    +IEV+GE  +
Sbjct: 127 LTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVP----LEIPYKEGLIEVQGEGMM 182

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
                L++ D+      +P  N RNAA+G LR LNP     R L  F + +G +      
Sbjct: 183 ----LLSVLDQYNQTAAEPLKNARNAAAGALRNLNPKVTAERRLTAFFYNVGFSDRKQFM 238

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              EM+  ++   F VN  V+  NT   +     +++  R    + IDG V KV +   +
Sbjct: 239 NHQEMIAFLKENHFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDFLIDGAVIKVTDIRTR 298

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + PRW I++KF  ++ +T L  +  ++GRTG +TPVA++EPV + G  + N T
Sbjct: 299 EVLGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAKVEPVELAGVTVQNCT 358

Query: 373 LHN 375
           L+N
Sbjct: 359 LNN 361


>gi|303252068|ref|ZP_07338237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649050|gb|EFL79237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 253

 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/270 (37%), Positives = 155/270 (57%), Gaps = 31/270 (11%)

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
           A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++   + E     +  PAD+F L
Sbjct: 5   AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMECE----LVHTPADLFKL 60

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                T+  ++E +   G+ S  N  +SI K +N +L RF+F+LGIR VG   A++LA +
Sbjct: 61  D---HTTLMRLERM---GEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNLANH 114

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           +          +N+ A     +  L  V  VG+++A  IV F+Q P N+  VE L+    
Sbjct: 115 F----------HNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQEPHNVAVVEDLI---- 160

Query: 634 PSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
            S G H ++V       + ++ K +V TGTL ++ R +A+  +   G  VS  +S KTD 
Sbjct: 161 -SQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSFGCKVSGSVSSKTDY 219

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +I G+  GSKL KAQ+LGVK++ E++F+ L
Sbjct: 220 LIAGEKAGSKLAKAQELGVKVLTEQEFIAL 249


>gi|82701055|ref|YP_418155.1| putative NAD-dependent DNA ligase [Pseudomonas phage EL]
 gi|82657960|emb|CAG27216.1| putative NAD-dependent DNA ligase [Pseudomonas phage EL]
          Length = 656

 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 187/711 (26%), Positives = 315/711 (44%), Gaps = 112/711 (15%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG---PLNKIGG 80
           L ++++YH   Y+  ++  I D  YD L++  + +   +P++A   D      P+++  G
Sbjct: 13  LHEQLTYHAHLYFVENRNEISDEAYDVLEQELNELYDRYPEIAAKFDFYNRPVPIHEPSG 72

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E   ++  V    P LSL+K  ++E+   F+ +         D + FF  E K+DG  + 
Sbjct: 73  E---TIQPVRFEEPMLSLKKALSVEEADTFLLKF-------PDGTNFF-YEEKLDGLALE 121

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEI-------IEVRGEV 191
           + YE+G+ V  + RG G  GEDV+  I      T+PR L   +P+        + +RGE 
Sbjct: 122 LVYEQGQLVSMSTRGSGLVGEDVTHSIVLFDEATLPRTLR-TLPDRHKPQGDRLVIRGEG 180

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT---DITRYLNFFVHGLGKTSE 248
           YIS   F +LN+     G++  +NPRNA SG +R L      DI   L F  +    +  
Sbjct: 181 YISLERFDSLNE---TGGKR--SNPRNAVSGWVRSLPQNQREDIRGTLYFAAYY--ASDR 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  K   E+ Q +  LGF    GV ++  +  I    N   +IR      +DG+V KVD+
Sbjct: 234 LGTKAYSELRQVLLGLGF----GVPESRDW--IAVSENRRGNIRP-----VDGIVIKVDK 282

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  Q   G  ++ P W I++KF  ++A  ++        R G + PV +  PV I G + 
Sbjct: 283 FKEQDASGNGSKFPHWAIAYKFPAEEALAQVEGCIWNTSRFGRVVPVVQYTPVTIQGVIC 342

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
            +A+L N          G  M  G  + +GDR+++ R  +VIP++  +   E   +    
Sbjct: 343 QSASLDN---------YGSFMDLG--LSIGDRIVITRNNDVIPRLNRV---EECGEGDLL 388

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S +   +   + +LV    C     C AQ + R      +   +++GLG 
Sbjct: 389 EAPTSCPSCDSLLEVVVGRDSSELV----CNNVAECPAQIVMRCVTTFDKFGLDVDGLGP 444

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTL------QRRQQTSTTKIENILGFGDVSVTNLYDSI 542
            ++    +       ++ PADI TL      Q    T+   +E +L              
Sbjct: 445 VKVSELVEKG----WVKQPADILTLPEGIKDQCLTPTTRRGLERVL-------------- 486

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
             +  + L RF+ +LGI  +G  +A+ LA       N   E     +  N  +L  +R  
Sbjct: 487 --QEPVPLHRFLKALGIPDIGITLAKRLA-------NAIPEGKIEESLTNPKFLQSVRGV 537

Query: 603 LVGDIIAQAIVEFYQNP---RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            VG  IA  +V  + +P    N  A++ LL           +   ++ +  K+  TG + 
Sbjct: 538 SVG--IAYRVVNAFDSPVFKDNFHALKGLLT---------LQYTGTQDDCIKVCITGNIG 586

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
              R +      + G  +S  L++    +IVGD PG SKL  A + G+ ++
Sbjct: 587 P-SRGELCNLFAKEGIELSDRLTQDCAFVIVGDRPGKSKLLIATESGIPML 636


>gi|15828872|ref|NP_326232.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) (fragment)
           [Mycoplasma pulmonis UAB CTIP]
 gi|14089815|emb|CAC13574.1| DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) (FRAGMENT)
           [Mycoplasma pulmonis]
          Length = 367

 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 220/400 (55%), Gaps = 39/400 (9%)

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+++ SL   LG+ ++     I++KF +K   T + DI + +G+TG++T  A+L+ V + 
Sbjct: 3   KLNDLSLYDLLGKTSKFFHHSIAYKFRKKIVMTTIQDIFVTVGKTGLITYNAKLQEVILN 62

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ I  ATLHN +YIK +            I +GD+V +++AGE+IP+VV  +VN ++ +
Sbjct: 63  GSKINAATLHNYEYIKNI-----------KINIGDKVYIEKAGEIIPRVVK-LVNPKN-N 109

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              FS    CP C++++    N         ++    L C  +++++LK+FVS+D   I+
Sbjct: 110 HNYFSPIEICPSCKNKLSWSKN-------MLNQFCLNLDCIEKKIQKLKYFVSKDGLEIQ 162

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
            LG ++++ FF        ++   DI+ L +       K+E    F + SV  L   I +
Sbjct: 163 ELGGKKIELFF----AKGWVKKIEDIYNL-KNNYDDLLKLEK---FQEHSVNVLLHKIEE 214

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            + +   + I +LGI+++G ++A+SL K  + ++N  + + +++  N D+   L +    
Sbjct: 215 SKQVYTWKLIAALGIKNIGKKLAKSLVK--IIFENDQKNLLSLLDFNYDE---LEKYDEF 269

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQ 662
           G +  +++ EF+ N  N   ++  L E    + + EK +  S+++ENK  + TGTL+K  
Sbjct: 270 GSVKIESLKEFFANDENKNLIK-FLSENGFEV-KLEKEIIQSTKLENKTFLITGTLEK-P 326

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
           R   +  + Q G ++S+ +S+K D +IVG NPGSK EK Q
Sbjct: 327 RDFYKNLIVQNGGLISSSISKKLDYLIVGQNPGSK-EKKQ 365


>gi|95930744|ref|ZP_01313477.1| DNA ligase (NAD+) [Desulfuromonas acetoxidans DSM 684]
 gi|95133224|gb|EAT14890.1| DNA ligase (NAD+) [Desulfuromonas acetoxidans DSM 684]
          Length = 690

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 175/704 (24%), Positives = 316/704 (44%), Gaps = 122/704 (17%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKIGGEMNLSLFKVTH 91
           + +Y+  +P+I D +YD +         A  +L ++  P+ P L+ +  E   +   V  
Sbjct: 80  NSFYRDGQPLISDHDYDHI---------ALAEL-KTRQPSHPFLHTVEPEPKFTGKTVEL 129

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQK--KDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
               LS EK +  ++L  ++ RI++   +  +D   + F + PK+DG      ++ G  +
Sbjct: 130 PARMLSTEKAYTDKELSDWLKRIHKAANEIGRDPAGLQFRITPKLDGFAA---FDDGDRL 186

Query: 150 YAALRGDGHSGEDVS-ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
           Y   RGDG  G D++ A  R +     V++ N P  +   GE+ + ++ F A     +A 
Sbjct: 187 YT--RGDGRRGTDITRAFERGL-----VVANNQPRGLGA-GEIVVQRSYFAA----NLA- 233

Query: 209 GRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
             + Y NPRN  + +++   L P             LG  + +F               +
Sbjct: 234 --QDYENPRNFQASVVKEKALEPA--------VEQALGNQAVVF---------------Y 268

Query: 267 PVNN---GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           P +     VR+++    I S     + +R++L YD+DG+V ++ +  L+  +G      R
Sbjct: 269 PFSTLPYRVRRSDDL--IDSVAALSRELRASLDYDMDGIVIEITDDELKTYMGATRHHHR 326

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W I++K  +++A  ++L +  Q  R+G + PVA +EP  + GALI  AT H+   +    
Sbjct: 327 WQIAYKQNQEKAEVKVLQVVPQTSRSGRVNPVAEVEPTRLSGALIQRATAHHYGMV---- 382

Query: 384 ASGKVMRGGRDIRVGDRVLVK--RAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                    RD  +G   +++  R+GEVIPK++D++       A     P+ CP C + +
Sbjct: 383 ---------RDKGIGPDAVIELTRSGEVIPKIIDVV------KAVEPQIPASCPSCDTEL 427

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
             D +           C     C AQ    ++HF  R   NI+G G   ++  + +    
Sbjct: 428 FWDSD--------YLYCPNNTGCPAQISHTIEHFF-RTLGNIDGFGPATIEKLYTN---- 474

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE--RFIFSLGI 559
            +IR    ++ LQ  Q          +GFG     NL + + + R+  +E  RF+ + G+
Sbjct: 475 -NIRTIDAVYGLQADQLEG-------MGFGPKQSENLVNELQRSRHEVIEDWRFLAAFGV 526

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
             +G      L  ++   + F      I+A           +    +  A+ +V+ +   
Sbjct: 527 FRMGGGNCERLLGHHRLEEIFELSEEQIVA-----------IEGFAERTAEVVVKGFARI 575

Query: 620 RNIC-AVEALLKEV--SPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           R +   ++AL   +  +P +   + + + + I  K LVFTGT+    R   +    +LGA
Sbjct: 576 RPLFDKLQALGFNLQRTPLVSELQASGALNPIAGKLLVFTGTMTHGSRDDMKAEAKKLGA 635

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            V A ++ KTD ++ GD  G SKL  A   GV+I+ EEQ+L L+
Sbjct: 636 KVGASVTGKTDYLVTGDKVGASKLNAATSKGVEILTEEQYLKLI 679


>gi|302844550|ref|XP_002953815.1| hypothetical protein VOLCADRAFT_118457 [Volvox carteri f.
           nagariensis]
 gi|300260923|gb|EFJ45139.1| hypothetical protein VOLCADRAFT_118457 [Volvox carteri f.
           nagariensis]
          Length = 1842

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 173/383 (45%), Gaps = 81/383 (21%)

Query: 125 SIFFTLEPKIDGTMITIRYEK---GKFVY--AALRGDG--HSGEDVSACIRAIP------ 171
           S  + +EPK+DG  + + Y +   G ++   AA RGDG    G  ++A I   P      
Sbjct: 246 SYRWVMEPKVDGLAVRVLYGRTAHGTYILKEAATRGDGWLGRGSHIAASISPSPAGAANH 305

Query: 172 -------------TIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
                        + P       PE +E RGEV+    D   +N E  AVG+ P+AN RN
Sbjct: 306 DGDGNEWENGSAASAP-AADCGAPEWVEARGEVFCRTADLELVNREQEAVGQPPFANTRN 364

Query: 219 AASGILRRLNPTDITRY-LNFFVH------------------------------------ 241
           AASG +R L+P +  R  L+F  +                                    
Sbjct: 365 AASGAVRLLDPAECRRRRLSFVAYAALAPSPPPSPSQQRRPEPATTTPPPSSSSPPPYPS 424

Query: 242 -------GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
                  G     +     Q++ LQ ++  GF V+   R  ++   ++    E    R+T
Sbjct: 425 SPSNRSSGNAAAVQPLHPSQWDTLQWLKSAGFSVSPDNRLCDSREEVLGAVEEWMEKRAT 484

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YD DG V K+D+ +L   LG     PRW ++ KF  ++A TR+  +++ +GR G +TP
Sbjct: 485 LGYDADGAVIKLDDTTLYDILGTAGSDPRWAVAWKFPGEEAVTRVTGVELTVGRQGQITP 544

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L PV +GG  I  A+LHN    + L         G  +  GD V+V+R+G+VIP+VV
Sbjct: 545 VALLSPVVVGGVTIRRASLHNLGLARAL---------GLHL-PGDAVVVRRSGDVIPQVV 594

Query: 415 DIIVNERHPDAQPFSFPSFCPIC 437
            ++   R P A+ +  PS CP C
Sbjct: 595 RVLPELRPPGAELWQPPSACPAC 617


>gi|218777900|ref|YP_002429218.1| DNA ligase (NAD(+)) [Desulfatibacillum alkenivorans AK-01]
 gi|254781309|sp|B8FKD5|DNLJ_DESAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218759284|gb|ACL01750.1| DNA ligase (NAD(+)) [Desulfatibacillum alkenivorans AK-01]
          Length = 631

 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 180/706 (25%), Positives = 309/706 (43%), Gaps = 138/706 (19%)

Query: 36  YQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPT 95
           Y+  KP+I D+ YD L  R   IA   PD       +G L+ +  E      +V H  P 
Sbjct: 28  YRAGKPMISDAHYDLLVERLREIA---PD-------HGFLSAVEAETFADKREVRHPAPM 77

Query: 96  LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155
           LS EK ++ + L +F+ R+Y+   +     + F + PK+DG  +  R + G+ +  A RG
Sbjct: 78  LSTEKAYDKQSLERFVERVYKEAAQIGVTDVLFQVTPKLDG--LAAR-DDGQIL--ATRG 132

Query: 156 DGHSGEDVSACIR--AIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           +G++G D++  +    IP   R L L   EI+ V+   Y  +N    L D         +
Sbjct: 133 NGYAGYDITNALEKGVIPQGGRGLGLG--EIVAVQS--YFQEN----LADR--------F 176

Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
            +PRN   GI+                     +S++      + L+  +    P     +
Sbjct: 177 EHPRNMVVGII---------------------SSDVLNISAKQALEDKQVHFVPYATLNK 215

Query: 274 QANTFHGIVSYYNEM-KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
              +   ++    ++ + +     Y +DG+V  V    ++  +G  +   RW I+ K   
Sbjct: 216 WEGSGKELLENSEKITQDLIQATDYPMDGMVASVMNQDVRDHMGATSHHYRWQIAIKAKG 275

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           +   T +  I  Q+GRTG +TPV  +EP+ + GA I   T HN         +G++   G
Sbjct: 276 ETGVTTVNAITWQVGRTGNVTPVLEVEPLKLSGATIRRVTAHN---------AGRIREKG 326

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
               VG  + V R+GEVIPK+ +++     P       P  CP+C++ +  + +      
Sbjct: 327 AG--VGASIEVIRSGEVIPKLENVLT----PSDDTL-IPENCPVCETPLEWNND------ 373

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF-FKSEDPAFSIRIPADIF 511
               +C   L C A+  +R++H+     F I G      D+F  K+ +     R+ A  F
Sbjct: 374 --FLKCP-NLNCKARVEQRIRHW-----FRILG----NADWFGIKTVE-----RLVAGGF 416

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSIN--KRRNISLERFIFSLGIRHVGAEIARS 569
               +    T +    L FG V   NL ++IN  K R +   RF+ + GI  +G   +R 
Sbjct: 417 DSLEKIYAMTEEDFLSLEFGPVQSKNLAEAINLSKSRPVEDWRFLAAFGISDLGEGDSRK 476

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           +  ++         +  ++    DD   ++ +   GD+ +              ++E  L
Sbjct: 477 ILSFF--------PLEELLDKTRDD---IVALHGFGDVTS-------------ISIEKGL 512

Query: 630 KEVSPSIGRH---------------EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           K + P+I RH               E +VSS I  K +VFTG+++   R   +E    LG
Sbjct: 513 KALGPTI-RHMLDLGFNLQPTPLKSEMDVSSPISGKGVVFTGSMETGSRKDMEENARSLG 571

Query: 675 AVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQ 719
           A V   ++ KTD +I G   G+ K +KAQ LGV ++ E+++L L++
Sbjct: 572 ANVQKAVTGKTDYLICGAKVGAKKTQKAQDLGVTVLTEQEYLQLVE 617


>gi|332297848|ref|YP_004439770.1| DNA ligase [Treponema brennaborense DSM 12168]
 gi|332180951|gb|AEE16639.1| DNA ligase [Treponema brennaborense DSM 12168]
          Length = 646

 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 182/718 (25%), Positives = 320/718 (44%), Gaps = 99/718 (13%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNK 77
           +EL++L   I  + D YY   +  I D+E+DAL            D  +  DP  P L++
Sbjct: 10  QELAAL---IEKYQDSYYN-GEAEISDAEFDALW-----------DELKQLDPAHPVLHR 54

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IG +   +  K +H +P  S EK  + E+        +  W +K     +  +E K+DG 
Sbjct: 55  IGSDSG-NFLKASHRMPMGSQEKAADPEE--------FLAWAEKHPYDEYL-VEYKLDGA 104

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVYIS 194
            + ++Y+ G F  A  RG+G  G+D++   R +  +   L+ +    P    +RGEV + 
Sbjct: 105 SLELQYDNGVFAKAVTRGNGAVGDDITVNARKMGGVKLRLTRDSSPCPYTGSIRGEVVMD 164

Query: 195 KNDFLALNDEMIAVGRKPY---ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
            +           V R  +   AN RNAA+G++RR +  +   YL+   +    +   FA
Sbjct: 165 HD-----------VHRTHFPDKANCRNAANGLMRRKD-GEGCEYLHVVCYDALFSDHQFA 212

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q ++     C GF     +    T   ++ Y  ++   R+ LPYDIDGLV K  E  +
Sbjct: 213 DEQDKIAWLSAC-GFQTVP-LEICKTAQEVIDYRAKVMESRAELPYDIDGLVVK--ERRI 268

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDI-QIGRTGILTPVARLEPVNIGGALITN 370
             +   RAR P   I+ KF+ ++A + + +I+  + G T   TP+A  +PV + G  +  
Sbjct: 269 DPEDAARAR-PDRQIAFKFSLEEAVSVVREIEWSESGAT--YTPIAVFDPVELAGTTVKR 325

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN----ERHPD-A 425
           A+L N + ++ L            +R+G  ++V + GE+IPK+  ++      E  PD +
Sbjct: 326 ASLVNPNTMRAL-----------GVRLGSHIVVTKRGEIIPKIESVVPQSDSAEDSPDES 374

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
              + PS C  C++ +V +      +L   ++     AC  + L RL+ +++    +I  
Sbjct: 375 ATCAVPSECGTCRTALVDEGT----RLYCPNK-----ACPKRILHRLEKWIT--VLDIRD 423

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV--TNLYDSIN 543
           LG   +   F S      +R  +D++TL  ++ T     E  L     S+    +Y S+ 
Sbjct: 424 LGTTLIRALFDS----GRVRSVSDLYTLTVQELTPYFLAEESLAKEKKSLGAEKVYKSLQ 479

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            RR ISL  F+    I  +G  +   L   +       + +    A        +  V  
Sbjct: 480 SRRKISLAAFVAGFDIEGIGETLVEKLVASHPDMDTLEKLLGAAEAE-------IALVNG 532

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            GDI AQA+V+      N   + +L+   S +I       S ++  +   FTG L  ++R
Sbjct: 533 FGDITAQALVQGLAE--NAAEMRSLVD--SGTIELEAVVSSGKLSGRSFCFTGELS-VKR 587

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A++ V  LG    + + +    ++  D     SK +KA  LG+ +++E  F  L+ 
Sbjct: 588 SEAEQAVKALGGTTKSSVVKGLSYLVTNDTESGSSKNKKAAGLGIPVIDEAAFWELVH 645


>gi|300728177|ref|ZP_07061548.1| putative DNA ligase [Prevotella bryantii B14]
 gi|299774603|gb|EFI71224.1| putative DNA ligase [Prevotella bryantii B14]
          Length = 705

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 191/746 (25%), Positives = 324/746 (43%), Gaps = 128/746 (17%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
           D YY     I+ D E+DAL  R   +      +        P++ +  + +++  K  H 
Sbjct: 21  DAYYNGQAEIMTDYEWDALFDRLKVLEQETGVILEE----SPIHHVSAD-SITGQKEEHE 75

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
              LSL K    EDL K+           D   I+ +   K+DG  +   Y+KGK     
Sbjct: 76  FAALSLAKTKKTEDLTKW----------ADGKPIWISW--KLDGLTLVATYDKGKLTKVV 123

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            RGDGH G +++    AI  IP+ +  N   I+ VRGE  IS  DF   N  +I  G   
Sbjct: 124 TRGDGHFGTNITHLAPAIQGIPQKIK-NKGHIV-VRGECVISYADF---NQFLIESGED- 177

Query: 213 YANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE---------IFAKGQYEMLQKMR 262
           YANPRN ASG L   +  ++ +R+L +    L  T E          F +       K  
Sbjct: 178 YANPRNLASGSLTLKDIDEVKSRHLQWIPFTLVYTDENINSWGKRMAFLEDNGMKTVKHE 237

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA--R 320
           C+  P  + +++      ++  + E +  ++  P+ +DGLV   +++    Q G      
Sbjct: 238 CILTPNQDNIQK------VIDRWTE-EVTKNKNPFPVDGLVIAYEDYEYS-QTGSITGHH 289

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           + R   + K+ ++ A+++L  I+     + I +PVA  EPV + G  +  A+L N    +
Sbjct: 290 ATRAGYAFKWKDESATSKLDHIEWSCAASTI-SPVAVFEPVELEGTTVQRASLCNISECE 348

Query: 381 GLDASGKVMRGGRDIRVGDRVL-VKRAGEVIPKVVDI--IVNERHPDAQPFSFPSFCPIC 437
            L    K           D VL V +A ++IPKV+ +   V E H        P  CP+C
Sbjct: 349 RLGIGDK-----------DSVLSVIKANKIIPKVIQVQQKVGELH-------IPETCPVC 390

Query: 438 --QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
             Q+++V  +   T  L     C+    C A+QL++   FVS+D  +I+G+ +Q L  F 
Sbjct: 391 HSQTQIVTSIASGTRTL----HCSNP-KCPAKQLKKFARFVSKDGLDIDGISEQTLSRFI 445

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   I+  ADIF    R      +I  + GFG  S  N++ +I K RN    + ++
Sbjct: 446 N----MGWIKEYADIF----RLSAHLNQIATLEGFGKKSANNIHKAIEKSRNAEAHKLLY 497

Query: 556 SLGIRHVGAEIARSLAKYY-------LSYQN-------------------FAQ-EINNII 588
           +L I  VG ++   L K Y       ++  N                   FAQ E  N++
Sbjct: 498 ALCIPLVGKDVCNRLLKSYPLEKLAAIASGNPNINKPIVTEKEDNYELDLFAQNEQENLL 557

Query: 589 AHNNDDW--------LSL-IRVPLVGDI------IAQAIVEFYQNPRNICAVEALLKEVS 633
           ++  +          LS+  R+ +   I       + ++V+++ +  N      LL  + 
Sbjct: 558 SNTTEGTTDANTFTPLSIDTRIAIFAGIDGLGPEKSASVVKWFSDEENQNEYRNLLGLL- 616

Query: 634 PSIGRHEKN-VSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
             + + + N +  + E    V TG +   + R++ + Y+   G  V+  +S+ T  +I  
Sbjct: 617 -HLSQDDNNPLGQKCEGLTFVITGDVHHYKNRNELKAYIESQGGKVTGSVSKSTSYLINN 675

Query: 692 D--NPGSKLEKAQQLGVKIMNEEQFL 715
           D  +   K +KA QL + I++E+QF+
Sbjct: 676 DVTSTSGKNQKAHQLNIPIISEDQFI 701


>gi|218667573|ref|YP_002425666.1| DNA ligase, NAD-dependent, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|218519786|gb|ACK80372.1| DNA ligase, NAD-dependent, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 609

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 183/705 (25%), Positives = 297/705 (42%), Gaps = 137/705 (19%)

Query: 36  YQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPT 95
           Y+   PI+ D+EYDAL  R        P L ++ +P  P N  GG       KV H  P 
Sbjct: 14  YRAGAPIMSDAEYDALVERLRREQPDHPYL-QTVEPE-PENIFGGA------KVRHHAPM 65

Query: 96  LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155
           LS EK +   DL ++ + + R   +   + + + +  K+DG  +    ++   V  A RG
Sbjct: 66  LSTEKAYTESDLIRYFSAVTRQAARLGMDEVIYAMTAKLDG--LAGSRDRAHGVDLATRG 123

Query: 156 DGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYAN 215
           +G  GED+    +A     +++  ++    +  GE+ + K+ F    + ++ +G   + +
Sbjct: 124 NGLQGEDIG---KAFARGLKIVGADV----DGPGEIVMPKDFF---EEHLVPLG---FKH 170

Query: 216 PRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVR- 273
           PRN                   F V  +G  +E   K  + ++++     F P  N  R 
Sbjct: 171 PRN-------------------FMVGFVGADTE---KDHHRLVKESGMAHFVPYANLPRF 208

Query: 274 --QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
               +T    ++Y +E   IR   PYD DG+V +V+E  L+  LG      RW I++K  
Sbjct: 209 YADKDTILRDIAYISE--DIRKNTPYDTDGIVIEVEEPELRAALGSTNHHHRWQIAYKTK 266

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            + A T +  +  Q GRTG +TPV  ++PV + GA I  AT HN           K  + 
Sbjct: 267 GETAETTVTGVVWQTGRTGRITPVIEIDPVELSGATIRRATAHNFQ---------KARKD 317

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
           G  + VG RV + R+GEVIP ++D++         P   P+ CP C   V  D    T  
Sbjct: 318 G--LGVGSRVTMIRSGEVIPFIMDVL------SPAPLDVPTACPCCNGPVEEDGEYLT-- 367

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
            V  H       C AQ    + HF     F I G      D F      A    + A I 
Sbjct: 368 CVNPH-------CEAQAEGAISHF-----FKIMGTA----DGFGPK---AVEKIVAAGIT 408

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE--RFIFSLGIRHVGAEIARS 569
            +      +    E  +GFG     NL   + +  +  +E  RF+ + GIR++G   +++
Sbjct: 409 DILAVLDMTRADFEG-MGFGPGQAENLEREMKRCMSTPVEDWRFLAAFGIRYLGRGDSKA 467

Query: 570 L--------------AKYYLSYQNFAQEINNIIAHN-NDDWLSLIRVPLVGDIIAQAIVE 614
           L                  ++   FA++    IAH+    W+ +           +A+ +
Sbjct: 468 LLCAIGGLDALNGITPAQIMAIDGFAEKTALCIAHDLTWRWMEI-----------EAVRD 516

Query: 615 FYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             + P         L   +P+  IG      +  +    LVFTGT  K  R   +     
Sbjct: 517 RMEAP---------LVSSAPAGDIG------TLPLAGMSLVFTGTFSK-DREVMETQAEA 560

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           LGA V + ++ KT ++++G+ PG SK  KA  LG  +  E ++L 
Sbjct: 561 LGAKVQSGVNGKTSVLVIGEKPGASKTTKAAALGTPVWTEAEYLL 605


>gi|213421996|ref|ZP_03355062.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 271

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/276 (34%), Positives = 154/276 (55%), Gaps = 10/276 (3%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+    P ILD+EYD L R    +    PDL     P+ P  ++G     +  ++ H +P
Sbjct: 2   YHVMDAPEILDAEYDRLMRELRELEAQRPDLIT---PDSPTQRVGAAPLTAFNQIRHEVP 58

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ +++ E    F  R+    + K   ++ +  E K+DG  ++I YE G  V AA R
Sbjct: 59  MLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELKLDGLAVSILYENGVLVSAATR 116

Query: 155 GDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GED+++ +R I  IP ++   NIP  +EVRGEV++ +  F  +N++    G K +
Sbjct: 117 GDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVF 176

Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYEMLQKMRCLGFPVNN 270
           ANPRNAA+G LR+L+P     R L FF +G+G  +  E+       +LQ  +  G PV++
Sbjct: 177 ANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQ-FKAWGLPVSD 235

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 236 RVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 271


>gi|307826049|ref|ZP_07656262.1| DNA ligase (NAD(+)) [Methylobacter tundripaludum SV96]
 gi|307732888|gb|EFO03752.1| DNA ligase (NAD(+)) [Methylobacter tundripaludum SV96]
          Length = 654

 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 181/728 (24%), Positives = 323/728 (44%), Gaps = 122/728 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDC--YYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I  ++ + + KEL++ EQ + +   C   Y+  +P I D++YD +          F    
Sbjct: 27  IAQIAKQASPKELTN-EQLLEFLQVCNALYRGGEPFISDADYDFV----------FLAEL 75

Query: 67  RSEDPNGP-LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           +   P+ P L  +  E+      VT   P LS EK ++   + K+++R+ +     DD  
Sbjct: 76  QKRHPHHPYLETVEPEVVAVGKTVTLPEPMLSTEKTYSQSGIEKWLSRLEK---AADDCD 132

Query: 126 IFFTL-----EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           + F+       PK+DG      Y+ GK +Y   RGDG  G D+S          RV    
Sbjct: 133 VDFSTLMIRATPKLDGYAA---YDDGKLLYT--RGDGRKGTDIS----------RVFERG 177

Query: 181 IP-----EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235
           +      +  +  GE+ +S+  F   N+ +       + N RN  + I++     D+ + 
Sbjct: 178 LKVGGNGKRGQGAGEIVVSQTYF---NNHLADY----FENSRNFQASIIKE---KDLEQ- 226

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE-MKSIRST 294
                H L            E +Q    + FP +       T   +++ +++ ++ + S 
Sbjct: 227 -----HAL------------EAIQNHAAVFFPFSQLPDWKGTAAEVLADFDQVIEKVYSL 269

Query: 295 LPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
           + YD+DG+V++ V    ++K LG      RW I++K   + A   ++ +  Q  R+G + 
Sbjct: 270 VDYDVDGVVFELVGNEQIKKYLGATRHHHRWQIAYKSNVETAEVIVIKVTPQTSRSGRVN 329

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L P  + GA+I+ AT H+   +K L            I VG  + + R+G VIPK+
Sbjct: 330 PVAELTPTKLSGAVISRATAHHYGMVKEL-----------GIGVGTLIELTRSGLVIPKI 378

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
             +I+  + P       P  CP C S +V D +           C     C AQ    ++
Sbjct: 379 ERVII-PKEP-----QIPEHCPSCGSELVWDSD--------YLYCLNTTKCPAQIENTIE 424

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
           HF  R   N++G G++ ++        A  I     ++ L   Q          +GFGD 
Sbjct: 425 HFF-RTLANVDGFGQKTVEKLH-----ACGINSVYAVYQLDMEQLQD-------MGFGDK 471

Query: 534 SVTNLYDSINKRRNISLE--RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           +  NL D + + R+ S+E  RF+ + GI  +G      L +++     F   + ++I   
Sbjct: 472 TAQNLMDQLQRSRSESIEDWRFLGAFGIHRMGLGNCERLLQHHHLMDIFKLTVEDVI--- 528

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
           N +  +      V + +A+   +F Q    I  +   L + +P I   ++N+S  I  K 
Sbjct: 529 NIEGFAEKTSAAVVECLAKIKTDFMQ----IHQLGFNLIQ-TPLIAEQQQNISP-ISGKT 582

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG +   +R    +   +LGA V + ++ KTD ++ G + G +K+  A + GV++++
Sbjct: 583 IVFTGAMIHGKRDDMSKEAKRLGAKVGSSVTGKTDFLVTGSDVGAAKIAAATEKGVRVIS 642

Query: 711 EEQFLFLL 718
           EE +L LL
Sbjct: 643 EEDYLALL 650


>gi|332992915|gb|AEF02970.1| DNA ligase (NAD(+)) [Alteromonas sp. SN2]
          Length = 649

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 170/702 (24%), Positives = 317/702 (45%), Gaps = 128/702 (18%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKIGGEMNLSLFKVTH 91
           +  Y+   PI+ D +YD            +  L R ++   P LN +  E  +    V  
Sbjct: 53  NALYRAGSPILSDKQYDI-----------YISLLRDQNHLHPYLNTVEPEPLIESKTVEL 101

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTLEPKIDGTMITIRYEKGKFV 149
               LS EK ++++D+ K++ RI +  Q+ +  +  I   + PK+DG      Y+ G  +
Sbjct: 102 PERMLSTEKAYSLQDIEKWVKRIQKAAQETNVPEEEIDIRVTPKLDGYA---AYDDGDTL 158

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAV 208
           Y   RGDG+ G+DV+   +      R L + N  E     GE+ I K+ F         V
Sbjct: 159 YT--RGDGYRGQDVTRAFK------RGLKVANSGERGLGPGEIVIKKSYF-------TEV 203

Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
               + N RN  + I+      +  +                     + ++   C+ +P 
Sbjct: 204 LSSYFENSRNIQAAIIAEKKVDNRIQ---------------------KAIKDGACVFYPF 242

Query: 269 ----NNGVRQA---NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
               NN V+ +   + F  IV      + I S++ +D+DG++ +    +++K +G   R+
Sbjct: 243 ALLKNNTVKISVLMDEFESIV------EGIWSSVDFDVDGVILETTNETIKKYMGATRRN 296

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK- 380
            RW I+ K  E+ A+  ++ +  Q  RTG + PVA L P  + G  I+  T+H+ + +K 
Sbjct: 297 HRWQIAFKVNEESANVEVVRVIPQTSRTGRIAPVAELVPTKLSGVTISRVTVHHYNMVKT 356

Query: 381 -GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
            G+ A G ++R            + R+G VIPK+ +++  +  PD      P  CP C S
Sbjct: 357 NGVGA-GAIIR------------LVRSGLVIPKIEEVLT-KVAPD-----IPDSCPSCGS 397

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            ++ +    +  L+    C   + C AQ    L HF  +   N +G G + ++       
Sbjct: 398 HLLWE----SDNLI----CPNKIDCPAQTENTLVHFF-KTLGNNDGFGSKTIEKL----- 443

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENIL--GFGDVSVTNLYDSINKRRNISLE--RFIF 555
            +F ++   +I++L+         +++ L  GFG+ +  NL++ +   R+I +E  RF+ 
Sbjct: 444 TSFGVKYIHEIYSLE---------VDDFLKIGFGEKTAINLFNQLQASRSIEIEDWRFLS 494

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           + G+  +G+     L +++     F   +++           +I++    +I A+AI E 
Sbjct: 495 AFGVSRLGSGNCEKLLEHHSLVSLFELTVSD-----------MIQIDGFAEISAEAIKEG 543

Query: 616 YQNPR-NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +N R     V  L   + P+   + + +SS I    +VFTGT+ +  R   ++    LG
Sbjct: 544 LENIREEFFKVYDLGFALRPTAIENTEKLSSPISGAIIVFTGTMIEGSRSDMEKNAKALG 603

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
           A V   ++ KT  ++ GD  G +K+  A+  GVK+++E+Q+L
Sbjct: 604 AKVGKSVTSKTTYLVTGDKVGETKINAAKDKGVKVLSEQQYL 645


>gi|290242978|ref|YP_003494648.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. K90mix]
 gi|288945483|gb|ADC73181.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. K90mix]
          Length = 652

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 171/700 (24%), Positives = 293/700 (41%), Gaps = 125/700 (17%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK---V 89
           +  Y+  +P++ D+ YD          H F      +DP  P  K   E     F+   V
Sbjct: 41  NASYRAGQPLVPDAVYD----------HLFIATLSEKDPEHPFLK-AVEPEGEAFEGDTV 89

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTLEPKIDGTMITIRYEKGK 147
            H  P LS +K +  ++LR+F+ R+    +       ++ F + PK+DG +  ++   G+
Sbjct: 90  KHDTPMLSTDKAYTEDELRRFLGRVEVAAEALGIRSETLTFRMTPKLDG-IAGMQRPDGR 148

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V    RG+G +G D+S          R L      +    GE+ + +  F    DE+  
Sbjct: 149 LVT---RGNGFAGADISHAFE------RGLRTPDGSMEPGPGELVLEEMFF---QDEIRV 196

Query: 208 VGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
               P+  PRN  +G +                      ++       +       + FP
Sbjct: 197 AFGMPH--PRNFVAGFV---------------------GADTVKPHHQKAADAQAIIFFP 233

Query: 268 VNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
                  QA+    + S+   M+++R  +PY  DG+V +V + +++  +G  +   RW +
Sbjct: 234 YRQLPAWQASAAVVMASWQERMEALRQAVPYRTDGVVLEVTDETVKAHMGSTSHHHRWRV 293

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           + K   + A  R+ DI IQ GRTG +TPV   +PV + GA I+N T H         A+ 
Sbjct: 294 ALKTKGEVAHVRVRDIRIQTGRTGRITPVLEFDPVLLTGARISNVTAHT--------AAN 345

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
              +G   + VG  + + RAG+VIPK+  ++     P ++P +  + CP C      +  
Sbjct: 346 LAQQG---LGVGAEIEISRAGDVIPKLERVL----EPASEPMTV-THCPSCGHEAEVE-- 395

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
              G+      C   + C AQ   RL+HF     F++ G      D F            
Sbjct: 396 ---GEYAV---CPNTVGCLAQAEARLRHF-----FHVMG----NADLFG----------- 429

Query: 507 PADIFTLQRRQQTSTTKIENI-------LGFGDVSVTNLYDSINK--RRNISLERFIFSL 557
           P  +  L     T    + ++       +GFG    +NL   + +  R  +   RF+ +L
Sbjct: 430 PKTVEVLVENGHTDLRGLFDLNAVAFVSMGFGPGQASNLVRELARCLREAVPDWRFLAAL 489

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+RH+G   +R L   Y       + I N+ A +      +  V   G I + +I E  Q
Sbjct: 490 GLRHLGRGDSRKLLAVYP-----LESITNLTAED------IAAVEGFGPITSASIAEQLQ 538

Query: 618 NPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             R    +EA+++     E +P  G         +  + +VFTGTL    R + +E    
Sbjct: 539 EQRE--RIEAMIRLGFNLERTPLAGEG-AAAEGPLAGQSIVFTGTLTLGSRGELEEQARG 595

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           LGA + + ++ KT I++ G+  GSK +KA+ +  K   E+
Sbjct: 596 LGATIQSGVNSKTTILVCGEKAGSKRKKAEAINEKAGKEQ 635


>gi|162452733|ref|YP_001615100.1| DNA ligase [Sorangium cellulosum 'So ce 56']
 gi|190359289|sp|A9F3W3|DNLJ_SORC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161163315|emb|CAN94620.1| DNA ligase [Sorangium cellulosum 'So ce 56']
          Length = 676

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 188/737 (25%), Positives = 308/737 (41%), Gaps = 124/737 (16%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + I  +   YY    P I D+ +DAL+    A+  A P LAR          
Sbjct: 26  KARIEELAERIEKYRASYYA-GHPEISDAAFDALEDELRALDPAHPVLAR---------- 74

Query: 78  IGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP---- 132
           +G    ++ + K  H IP  SL K+ + ++L  ++ R      K           P    
Sbjct: 75  VGSASLITEWEKARHEIPMGSLNKVVSEDELLGWVARCDEILVKDGHGDGGTGAAPPAPG 134

Query: 133 -------------KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
                        K+DG  I + Y+ GK V A  RGDG  GE ++A +  +  IP    +
Sbjct: 135 SISSVAGDLFVAEKLDGISIEVIYKGGKLVDAITRGDGEWGERITANVARMKGIPS--RI 192

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFF 239
                + VRGE+ +  +D   +      V      +PRN A+G  +R +      +    
Sbjct: 193 REKGRLSVRGEIILRLSD---MKRHFPGV-----TSPRNMAAGAAKRFDGQG-AEHCTVL 243

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHG----IVSYYNEMKS-IRS 293
            + +    EI   + ++  L+++         G     T HG    +V  Y    S +R+
Sbjct: 244 FYDVADHLEIPTCRARFAWLREL---------GFATPQTAHGSVEDVVKLYRRYSSELRA 294

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            L Y+IDGLV  VD   +Q  LG+  R PR  ++ KFA     T ++ I    G +G +T
Sbjct: 295 GLDYEIDGLVVYVDSLHVQGLLGDVNRRPRGAVAFKFASPAKVTTVVAIQWDTGPSGRVT 354

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA +EPV + GA +  A+LHN   ++ L            I VGD VLV R  +VIP V
Sbjct: 355 PVAIVEPVELAGANVRRASLHNSANVRSL-----------GIGVGDEVLVSRRNDVIPYV 403

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
            + +V +R P A P   PS CP+C + +V +     G+ +         AC A    R+ 
Sbjct: 404 EE-VVEKRGPVAVP---PSVCPVCSAPLVVE-----GEYLLCRNA----ACRALIEGRIH 450

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
           +++  DA      G + ++        A  +R P D++ L      +   I ++   G+ 
Sbjct: 451 NWI--DAIGALEWGDKLIEQVVA----AGLVREPLDLYKL------TVKSIADLDRRGEK 498

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           S T   + +  R  ++L  F+ +LGI     + AR L     +       I  ++A   D
Sbjct: 499 SATKCLEQLKSRLPLALPVFLAALGIEGFAIQTARLLVSAGYTT------IEKLLAAGED 552

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIEN 649
           +   L  +P +G I A +IV               L+  S  IGR        V+ E E 
Sbjct: 553 E---LAGIPGLGAIKAASIVRG-------------LRARSDEIGRLLAAGIVPVAPEAEG 596

Query: 650 K----KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQ 703
                   FTG   +  R +    V   G  V   ++++ + +++ D  +  SK  KA++
Sbjct: 597 PLAGLTFCFTGAGAR-PRGELTHLVESSGGRVLNSVTKELNYLVIADVASTSSKAVKARK 655

Query: 704 LGVKIMNEEQFLFLLQQ 720
            G K++ E+    L+ +
Sbjct: 656 YGTKLITEDDLDKLIAE 672


>gi|261884935|ref|ZP_06008974.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 195

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/188 (44%), Positives = 117/188 (62%), Gaps = 4/188 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R + P+    ++G    L+ F  V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYI 193
           EVRGEVY+
Sbjct: 181 EVRGEVYM 188


>gi|145640787|ref|ZP_01796370.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|145274713|gb|EDK14576.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21]
          Length = 191

 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 89/216 (41%), Positives = 135/216 (62%), Gaps = 29/216 (13%)

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
           D++ Q+GRTG +TPVA+LEPV + G  ++NATLHN D I+ L           +I +GD 
Sbjct: 3   DVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERL-----------NIAIGDT 51

Query: 401 VLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459
           V+++RAG+VIP+++ ++ +ER PD A+P  FP+ CP+C S+++R      G+ VA  RCT
Sbjct: 52  VVIRRAGDVIPQIIGVL-HERRPDNAKPIIFPTNCPVCDSQIIR----IEGEAVA--RCT 104

Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
           GGL C+AQ+ E LKHFVSR A +I+G+G + ++     E     I  PAD+F L     T
Sbjct: 105 GGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRE----LIHTPADLFKL---DLT 157

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + T++E +   G  S  N  +S+   ++ +L RFI 
Sbjct: 158 TLTRLERM---GAKSAENALNSLENAKSTTLARFIL 190


>gi|291060005|gb|ADD72740.1| DNA ligase, NAD-dependent [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 840

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 188/743 (25%), Positives = 320/743 (43%), Gaps = 117/743 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +   ++  A++ +  LE+ I +H D YY  ++  I D  +DAL          + +LAR 
Sbjct: 13  LRPCAMSTAQRRVQELEKLILHHQDRYYN-AESDISDDAFDAL----------WEELARL 61

Query: 69  EDPNGPLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            DP  PL K IG +      K  H +P  S  K  + E         +  W KK+    F
Sbjct: 62  -DPGNPLLKAIGSDSQRDAVKKRHIVPMGSQHKAADEES--------FSAWAKKNALQAF 112

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA----IPTIPRVLSL--NI 181
             ++ K+DG  + ++YE+G F  A  RG+G  G+DV+A +R     +PT+        N+
Sbjct: 113 L-VQHKLDGVSLELQYERGHFCCALTRGNGIVGDDVTANVRGMRGFVPTLTAEWGPCGNL 171

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKP-YANPRNAASGILRRLNPTDITRYLNFFV 240
           P    VRGEV + K+         I     P +AN RN  +GIL+R +    T +L+   
Sbjct: 172 PFTGGVRGEVIMHKD---------IHRSHYPTHANCRNTVNGILKRKDGRGRT-HLHIVC 221

Query: 241 H-------GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +       G   T  +    + E L  +   GF   +  R AN    +V+  +E+   R 
Sbjct: 222 YDAVPGTPGKPFTGSLPFADETEKLAWLARQGFVTVHSHRCANA-QEVVALRSEIMRTRE 280

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL- 352
            LPY IDGLV K  +   Q     R   P+  I+ KF+ ++A T L D+  Q   +G+  
Sbjct: 281 LLPYSIDGLVVKSTDLDFQDAQLPR---PKKQIAFKFSTQEAITTLRDVQWQT--SGVTY 335

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TP+   +PV + G  +  A L N + +  L            +++G  VL+ + GE+IPK
Sbjct: 336 TPIGITDPVRLAGTTVKRANLCNPNMLTKL-----------CLKIGSHVLISKRGEIIPK 384

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRV----VRDLNPKTG-KLVAAHRCTGGLACSAQ 467
           +  ++    H  AQ    P+ C  C + +     R   P     L++ HR T  + C   
Sbjct: 385 IEALVSTPAH--AQEIHIPTQCTSCNTVLENSGSRLFCPNVNCPLLSHHRITRWIEC--- 439

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
                          I+ +G + +   F+ +      RIP D++TL     T    IE I
Sbjct: 440 -------------LEIKHVGTELIQRLFEEKKVR---RIP-DLYTL-----TCEDLIE-I 476

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
              G+ +   + ++I+ ++ I+L+ FI   GI  +G  +   L      +    +     
Sbjct: 477 EHVGNATAKKILEAIHHKKEIALQTFIAGFGIEGIGETMGEKL--ICAGFDTLEK----- 529

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR-NICAVEALLKEVSPSIGRHEKNVSSE 646
           + H   + L  I     G  +A+++V      + ++C  E L +     + + +    S 
Sbjct: 530 VLHATTETLESIY--QFGTELAKSVVTGIARVKDDMC--ELLDRGFVRILAKQQ--AESP 583

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKA 701
           +  K   F+G+L+   R      +  LG VV   ++R    +I            KL+K 
Sbjct: 584 LRGKSFCFSGSLRNGDRATIHR-IRALGGVVRTSVTRDLSYLIFESLSQPYRTAQKLKKE 642

Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724
           Q + ++I++E++F  LL Q + +
Sbjct: 643 QGVALEIISEDEFCRLLDQASAS 665


>gi|15639622|ref|NP_219072.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189025860|ref|YP_001933632.1| DNA ligase [Treponema pallidum subsp. pallidum SS14]
 gi|6014987|sp|O83642|DNLJ_TREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781445|sp|B2S3M4|DNLJ_TREPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3322933|gb|AAC65609.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018435|gb|ACD71053.1| DNA ligase [Treponema pallidum subsp. pallidum SS14]
          Length = 823

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 188/738 (25%), Positives = 318/738 (43%), Gaps = 117/738 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A++ +  LE+ I +H D YY  ++  I D  +DAL          + +LAR  DP  
Sbjct: 1   MSTAQRRVQELEKLILHHQDRYYN-AESDISDDAFDAL----------WEELARL-DPGN 48

Query: 74  PLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           PL K IG +      K  H +P  S  K  + E         +  W KK+    F  ++ 
Sbjct: 49  PLLKAIGSDSQRDAVKKRHIVPMGSQHKAADEES--------FSAWAKKNALQAFL-VQH 99

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA----IPTIPRVLSL--NIPEIIE 186
           K+DG  + ++YE+G F  A  RG+G  G+DV+A +R     +PT+        N+P    
Sbjct: 100 KLDGVSLELQYERGHFCCALTRGNGIVGDDVTANVRGMRGFVPTLTAEWGPCGNLPFTGG 159

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKP-YANPRNAASGILRRLNPTDITRYLNFFVH---- 241
           VRGEV + K+         I     P +AN RN  +GIL+R +    T +L+   +    
Sbjct: 160 VRGEVIMHKD---------IHRSHYPTHANCRNTVNGILKRKDGRGRT-HLHIVCYDAVP 209

Query: 242 ---GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
              G   T  +    + E L  +   GF   +  R AN    +V+  +E+   R  LPY 
Sbjct: 210 GTPGKPFTGSLPFADETEKLAWLARQGFVTVHSHRCANA-QEVVALRSEIMRTRELLPYS 268

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL-TPVAR 357
           IDGLV K  +   Q     R   P+  I+ KF+ ++A T L D+  Q   +G+  TP+  
Sbjct: 269 IDGLVVKSTDLDFQDAQLPR---PKKQIAFKFSTQEAITTLRDVQWQT--SGVTYTPIGI 323

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
            +PV + G  +  A L N + +  L            +++G  VL+ + GE+IPK+  ++
Sbjct: 324 TDPVRLAGTTVKRANLCNPNMLTKL-----------CLKIGSHVLISKRGEIIPKIEALV 372

Query: 418 VNERHPDAQPFSFPSFCPICQSRV----VRDLNPKTG-KLVAAHRCTGGLACSAQQLERL 472
               H  AQ    P+ C  C + +     R   P     L++ HR T  + C        
Sbjct: 373 STPAH--AQEIHIPTQCTSCNTVLENSGSRLFCPNVNCPLLSHHRITRWIEC-------- 422

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532
                     I+ +G + +   F+ +      RIP D++TL     T    IE I   G+
Sbjct: 423 --------LEIKHVGTELIQRLFEEKKVR---RIP-DLYTL-----TCEDLIE-IEHVGN 464

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +   + ++I+ ++ I+L+ FI   GI  +G  +   L      +    +     + H  
Sbjct: 465 ATAKKILEAIHHKKEIALQTFIAGFGIEGIGETMGEKL--ICAGFDTLEK-----VLHAT 517

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPR-NICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
            + L  I     G  +A+++V      + ++C  E L +     + + +    S +  K 
Sbjct: 518 TETLESIY--QFGTELAKSVVTGIARVKDDMC--ELLDRGFVRILAKQQ--AESPLRGKS 571

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQLGV 706
             F+G+L+   R      +  LG VV   ++R    +I            KL+K Q + +
Sbjct: 572 FCFSGSLRNGDRATIHR-IRALGGVVRTSVTRDLSYLIFESLSQPYRTAQKLKKEQGVAL 630

Query: 707 KIMNEEQFLFLLQQYNTT 724
           +I++E++F  LL Q + +
Sbjct: 631 EIISEDEFCRLLDQASAS 648


>gi|51244858|ref|YP_064742.1| NAD-dependent DNA ligase [Desulfotalea psychrophila LSv54]
 gi|81642639|sp|Q6API9|DNLJ_DESPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50875895|emb|CAG35735.1| related to NAD-dependent DNA ligase [Desulfotalea psychrophila
           LSv54]
          Length = 679

 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 171/698 (24%), Positives = 299/698 (42%), Gaps = 115/698 (16%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKIGGEMNLSLFKVTH 91
           +  Y+   P++ D  YD            F    R  +P  P L ++  E       V  
Sbjct: 74  NALYRAGYPLLSDEAYD----------FTFLTELRRRNPQHPYLLQVEAEPVQQGKTVEL 123

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            +  LS +K +++E +R++  RI +  Q+K  D  S+ F   PK+DG      Y+ G+ +
Sbjct: 124 PMRMLSTDKAYDLESIRRWGRRIEKAAQEKGIDFTSLVFRGTPKLDGFAA---YDDGRRL 180

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
           Y   RGDG  G DVS        + R  S  +       GE+ ++K+ F     E +A  
Sbjct: 181 YT--RGDGKKGTDVSRAFARGLQVSRGGSRGLGA-----GEIVVNKDYF----TEHLA-- 227

Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
            + + N RN  + +++     + T  L   V  +   + IF    + ML   R       
Sbjct: 228 -QFFDNSRNFQASLIK-----EKTLALPV-VKAIEAGAAIFFP--FSMLPDWR------G 272

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
           + +     F  IV      + +   +PY+IDG+V+++ +  L++ +G      RW I+ K
Sbjct: 273 SWLELLQEFEEIV------EGLWQKVPYEIDGVVFEIIDEGLREVMGATRHHHRWQIAFK 326

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
              + A   +L +  Q  R G + PVA +EP  + GALI   T H+   ++         
Sbjct: 327 KNTEIAEVTVLRVRPQTSRLGRVNPVAEVEPTRLSGALIQRVTAHHYAMVR--------- 377

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
              R I  G R+ + R+GEVIPK+ +++   +   A     P+ CP C S +  D     
Sbjct: 378 --DRGIGPGARIRMSRSGEVIPKIEEVV---KPVAAAQLDIPAHCPSCGSDLAWD----- 427

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
           G  +    C   ++C AQ    ++HF  +   N++G G   +   ++       + +PA 
Sbjct: 428 GDYLF---CLNNMSCPAQITNSMEHFF-KILGNVDGFGPSSVQRLYEGG----LVDLPA- 478

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE--RFIFSLGIRHVGAEIA 567
           ++ ++      +   E + GFG    TN+ + +N+ R   +E  RF+ + G+  +G    
Sbjct: 479 LYAME------SADFEQV-GFGPKQATNMVEQLNRSREELIEDWRFLAAFGVHRLGMGNC 531

Query: 568 RSLAKYY-------LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
             L +Y        LS +    EI       AH+    L+ I+     D+  Q     ++
Sbjct: 532 EKLLRYVRLEDVFNLSEEQIVAEIKGFQEKTAHSICAGLAGIK-----DLFFQLFALGFK 586

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                        E +P +    +   S I  K +VFTG +    R   ++    LGA V
Sbjct: 587 ------------LEPTPLLAEGGQGEKSPISGKTIVFTGAMLAASRGDMEKQAKALGATV 634

Query: 678 SAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
              ++ KTD+++ G   G +K+ KA+ LG+ I++EE +
Sbjct: 635 GKSITGKTDMLVTGQRVGATKMAKAETLGIAILSEEAY 672


>gi|218459622|ref|ZP_03499713.1| NAD-dependent DNA ligase LigA [Rhizobium etli Kim 5]
          Length = 186

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 76/184 (41%), Positives = 118/184 (64%)

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
           V  LY +IN+ R+I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + D 
Sbjct: 1   VGKLYAAINEPRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMREAAPLSGDA 60

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
           W  L  +  +G+++A+A+VEFY+ P NI  +  LL EV+P          S +  K +VF
Sbjct: 61  WNDLNAIEGIGEVVARAMVEFYKEPLNIEVITRLLDEVTPQEAEQPVTAGSPVAGKTVVF 120

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L+K  R +A+     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++
Sbjct: 121 TGSLEKFTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEW 180

Query: 715 LFLL 718
           L L+
Sbjct: 181 LALI 184


>gi|281414409|ref|ZP_06246151.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
          Length = 248

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 127/230 (55%), Gaps = 6/230 (2%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E   L + +      YYQ   P I D+EYDAL RR + +    P+L  ++ P     +
Sbjct: 22  REEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELVSNDSPT---QE 78

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDG 136
           +GGE++ +   V H     SLE ++++E+L  +  R  +   Q +   +  + +E KIDG
Sbjct: 79  VGGEVSEAFAPVRHGARMYSLEDVFSVEELEVWFRRAAQALTQVRPGVAPRWLVEVKIDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISK 195
             + +RY  G+ V AA RGDG +GEDV+A +R I  IP  LS    P   EVRGEV++S 
Sbjct: 139 LAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAEFEVRGEVFMSS 198

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
             F  LN      G+ P+ANPRNAA+G LR+ +P     R L  FVHG+G
Sbjct: 199 AAFAELNARRAEEGQPPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGIG 248


>gi|328947954|ref|YP_004365291.1| DNA ligase [Treponema succinifaciens DSM 2489]
 gi|328448278|gb|AEB13994.1| DNA ligase [Treponema succinifaciens DSM 2489]
          Length = 651

 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 175/717 (24%), Positives = 323/717 (45%), Gaps = 105/717 (14%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +S LE+ I  +   YY   +  I D+E+D L          + +L   +  N  L+K+
Sbjct: 23  KRISELEKLIEKYQASYYN-GEAEISDAEFDKL----------WDELKSLDSANPILHKV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +   +  K  H +P  S EK    E+        +  W KK D S +  +E K+DG  
Sbjct: 72  GADSG-NFQKSPHVMPMGSQEKAATPEE--------FLDWAKKHDYSEYL-VEYKLDGAS 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + ++Y  G F+ A  RGDG  G+ ++A  + +  + + L       I  RGEV ++    
Sbjct: 122 LELQYSDGIFLRAVTRGDGTVGDVITANAKKMQGVVQELKEKFTGGI--RGEVIMTHQ-- 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL----GKTSEIFAKGQ 254
             ++++  +      AN RNAA+G+++R +  + +  L    + +    GK      +G+
Sbjct: 178 --VHEKFFS----DKANCRNAANGLMKRKD-GEGSENLTLITYDVWASEGKQPFNDEEGK 230

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            + LQ+    GF V   ++   +   ++ Y + +  +R  L YDIDGLV K      +  
Sbjct: 231 LDFLQRN---GFNVVP-LKICKSTQEVIDYRSSVMELRKNLDYDIDGLVVKERAVDHEDA 286

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDI-QIGRTGILTPVARLEPVNIGGALITNATL 373
           L +R   P   I+ KF+ ++A + + +I+  + G T   TPVA  +PV++ G  +  A+L
Sbjct: 287 LRDR---PDRQIAFKFSLEEAVSIVRNIEWNETGAT--YTPVAVFDPVDLNGTTVKRASL 341

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432
            N + I+ L           ++++G  V+V + GE+IPK+V ++  + + P  +    P 
Sbjct: 342 VNPNLIRAL-----------NVKIGSHVVVVKRGEIIPKIVSVLPEQENLPSVK---IPE 387

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            C  C + ++ +      +L   ++      C  + L +L  ++  +  +I  LG+  + 
Sbjct: 388 KCACCGTSLIDE----GTRLFCPNK-----NCEKRILHQLLKWI--NVIDIRDLGETLIT 436

Query: 493 FFFKSEDPAFSIRIPADIFTLQRR-------QQTSTTKIENILGFGDVSVTNLYDSINKR 545
             F+++     +R  +D+++L             S  K +  LG        ++ SI  R
Sbjct: 437 SLFETK----KVRSISDLYSLTASDLVPYFLNSESMEKEKKSLG-----AEKVFASIQSR 487

Query: 546 RNISLERFIFSLGIRHVGAEIARSL-AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           R I L +FI    I  +G  +  +L A  + + Q         IA           V   
Sbjct: 488 RKIPLAKFIAGFDIEGIGETVVETLIAGGFNTLQKIFDAKEEEIAG----------VYRF 537

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            + +A  +VE  Q  R    +++L+   S +I   E     ++  K   FTG L  ++R 
Sbjct: 538 AETLAHTLVEGIQENRE--EMQSLVS--SGTISVIEGAAQGKLAGKSFCFTGELVSMKRQ 593

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719
            AQ  V Q G  V + + +    ++  D     SK +KA +LG+ +++E++FL L++
Sbjct: 594 DAQNLVKQNGGAVKSSVVKGLSFLVTNDTSSGSSKNKKAMELGIPVIDEKEFLALIK 650


>gi|323228068|gb|EGA12205.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 276

 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 152/280 (54%), Gaps = 10/280 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H IP LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G  +  E+
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
                  +LQ  +  G PV++ V   ++   ++ +Y+ ++
Sbjct: 236 PDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYHNVE 274


>gi|261886171|ref|ZP_06010210.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 292

 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 147/284 (51%), Gaps = 14/284 (4%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P+  D EYD L           PDL  S     P N+IGGE+     K++H  
Sbjct: 19  AYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSY---SPTNRIGGEILDEFKKISH-- 73

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
               +EK+W++ED+    + +  +  + D     F  EPK DG  + + YE G  + AA 
Sbjct: 74  ----IEKMWSMEDIFS-DSELVAWISRGDKTDCEFFAEPKFDGASLNLLYENGNLISAAT 128

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG  GEDV+   + I ++P  L ++  + IE+RGEV I+K+DF  +N E       P 
Sbjct: 129 RGDGSVGEDVTNNAKVISSVP--LQIDYKDKIEIRGEVVITKDDFELINIERSKNSEPPL 186

Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+   +  R L F+  G+G+ S  F K   +++  +R LGF  +N  
Sbjct: 187 ANPRNAAAGSLRQLDNGIVKQRKLKFYPWGVGENSLKFNK-HSQIMDFVRSLGFLHDNFC 245

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +       +   Y E+ S+R   P  +DG+V +V++ S   QLG
Sbjct: 246 KVIRGIDELKIAYKELLSVRELKPILMDGMVIRVNDLSKANQLG 289


>gi|126174865|ref|YP_001051014.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
 gi|166216240|sp|A3D5Y2|DNLJ_SHEB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|125998070|gb|ABN62145.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
          Length = 648

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 170/701 (24%), Positives = 321/701 (45%), Gaps = 119/701 (16%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKIGGEMNLSLFKVTH 91
           +  Y+   P+I D  YD+   +  A+ H          PN P +  +  E+ L+L K T 
Sbjct: 51  NALYRSGFPVIEDILYDSFWNKF-ALNH----------PNHPFITSVETEV-LNLGK-TV 97

Query: 92  SIP--TLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTLEPKIDGTMITIRYEKGK 147
           ++P   LS +K ++ E+++K++ RI +  ++ D   N I   + PK+DG      ++ G+
Sbjct: 98  ALPQKMLSTDKAYSKEEIKKWLDRILKAAEELDIDTNEIEIRITPKLDGYA---AFDDGE 154

Query: 148 FVYAALRGDGHSGEDVSAC----IRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
            +Y   RGDG  G+DVS      ++ +    R L           GE+ I+K  F    +
Sbjct: 155 RLYT--RGDGVKGQDVSRAFERGLKVVRNSERGLG---------AGEIVINKAYF----E 199

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
           + ++   + + N RN  + I+   N  +  R L                   E +++  C
Sbjct: 200 KKLS---QYFENSRNIQAAIIAEKNVDE--RVL-------------------EAIKEGAC 235

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEM-KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
           +  P          +  +++ ++ + + + +++ YD+DG++ +  +  +++ +G   +  
Sbjct: 236 VFHPFAVLPNWTGNYQDLMTDFDGIIEQVWNSVEYDVDGVILEATDTRIKEHMGANRKFH 295

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW I+ K  ++ A   ++ +  Q  RTG +TPVA L P  I GA+I+  T+H+ + +K +
Sbjct: 296 RWQIAFKINDEVAEVEVISVTPQTSRTGRVTPVAELVPTRISGAMISRVTVHHYNMVK-I 354

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
           +  G           G  V + R+G VIPK+  +I   +  D Q    P  CP C+S ++
Sbjct: 355 NGVGP----------GAIVQIVRSGLVIPKIEKVI---KPVDPQ---MPELCPSCKSHLL 398

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
            +    +  LV    C     C AQ    L HF    A N +G G + ++          
Sbjct: 399 WE----SDHLV----CPNKSDCPAQTENTLVHFFKTLANN-DGFGPKNIEKL-----ANL 444

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE--RFIFSLGIR 560
            ++    ++ L+  Q         + GFG+ +  NLYD +   +NI +E  RF+ + G+ 
Sbjct: 445 GVKHIHQMYDLKPHQFA-------MYGFGEKTSKNLYDQLQASKNIEIEDWRFLSAFGVS 497

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
            +G      L ++Y   + F   + +I   N        RV       A+AIV+   N +
Sbjct: 498 RLGGGNCEKLLQHYSLRELFEATVEDIAELN-----GFARVS------AEAIVKGLANIK 546

Query: 621 -NICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                V  L   +S +  + E ++++S +  K +VFTG + + +R   +++   LGA V 
Sbjct: 547 EEFFKVYDLGFNLSITPKQSELESLASPLTGKIVVFTGKMLQGKRSDMEKHAKALGAKVG 606

Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             ++  T  +I G   G +K+  A++ GVK+++E+++L L+
Sbjct: 607 TSVTSNTTYLIAGLKVGETKINDAKEKGVKVLSEQEYLDLI 647


>gi|325662258|ref|ZP_08150873.1| hypothetical protein HMPREF0490_01611 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471510|gb|EGC74731.1| hypothetical protein HMPREF0490_01611 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 402

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 209/423 (49%), Gaps = 44/423 (10%)

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DGLV   D+ +  + LG  A+ PR   + K+A++   T L +I+    RTG++ PVA  +
Sbjct: 17  DGLVLTYDDIAYGQSLGSTAKFPRDSFAFKWADEIRETTLREIEWSPSRTGLINPVAIFD 76

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A++HN   ++ L           ++ +GD + V +A  +IP++ +   N
Sbjct: 77  PVELEGTTVSRASVHNLSIMEEL-----------ELGIGDTIQVYKANMIIPQIAE---N 122

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
                  P   P  CP C           T  L     CT    C A+ ++    FVSRD
Sbjct: 123 LTRSGMAP--VPECCPACGGETEIRQVSDTKTLY----CTNP-DCGAKHIKAFSLFVSRD 175

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GL +  L+ F       F IR  +DIF L+R  +    +I ++ GFG+ S  NL 
Sbjct: 176 AMNIDGLSEATLEKFITR---GF-IRHFSDIFHLERYGE----EIRSMEGFGEKSYKNLQ 227

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           DSI K R  +L + I+ LGI ++G   A+ + +       F  ++  ++     D  +L 
Sbjct: 228 DSIEKARTTTLPKLIYGLGIANIGLSNAKMICRA------FDYDVEKML---QADVEALN 278

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTL 658
            +  VGD+IA+A V+++    +      LL+EV   I   E     +I      V TG++
Sbjct: 279 EIQGVGDVIARAFVDYFAVEDHREEFFRLLEEV--KIPEEETTQEEQIFAGMNFVITGSV 336

Query: 659 QKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
           +    R++ +E +   G  V+  ++ KT+ +I  D  +  SK +KA++LG+ I++E+ FL
Sbjct: 337 EHFANRNEVKEVIESKGGKVTGSVTSKTNWLINNDVESTSSKNKKARELGIPIISEDTFL 396

Query: 716 FLL 718
            ++
Sbjct: 397 KMI 399


>gi|254479199|ref|ZP_05092546.1| NAD-dependent DNA ligase adenylation domain subfamily
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034862|gb|EEB75589.1| NAD-dependent DNA ligase adenylation domain subfamily
           [Carboxydibrachium pacificum DSM 12653]
          Length = 271

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 142/269 (52%), Gaps = 11/269 (4%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E +  E+ARK +  L ++I+YH+  YY   +P I D EYD L R    +   +P+    +
Sbjct: 13  EFMDREEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---K 69

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GGE        TH +P LSL   +  E+++ F  R+     K+    + + 
Sbjct: 70  TPDSPSQRVGGEPLDEFEPFTHIVPMLSLANAFTAEEIKDFDRRV-----KEAVGEVEYV 124

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +EPKIDG  + + YE G F   + RGDG  GE+V+  ++ I +IP  L  ++  +  VRG
Sbjct: 125 VEPKIDGLSVELVYENGIFTVGSTRGDGIVGENVTPNLKTIKSIPLRLKDSVNLV--VRG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248
           EV++ K  F  LN+E    G   +ANPRNAA+G +R+L+P     R L+ F+  L +   
Sbjct: 183 EVFMPKASFAKLNEERAERGESLFANPRNAAAGSVRQLDPKVTAKRDLDIFIFNLQRIEG 242

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANT 277
              K   E L+ ++  GF V   +++  T
Sbjct: 243 RDFKTHVEALEFLKEQGFKVIPFIKKCTT 271


>gi|332755050|gb|EGJ85415.1| DNA ligase domain protein [Shigella flexneri 4343-70]
          Length = 256

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 131/233 (56%), Gaps = 7/233 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP ++   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG 228


>gi|291545735|emb|CBL18843.1| pseudouridine synthase family [Ruminococcus sp. SR1/5]
          Length = 610

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 125/433 (28%), Positives = 197/433 (45%), Gaps = 44/433 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K++  L +++      YYQ  + I+ + EYDAL     A+      +      + P   +
Sbjct: 168 KKMKELGEKLREASRAYYQEDREIMSNVEYDALYDTLSALEKETGIVL----ADSPTVNV 223

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E    L K  H  P LSL+K    E LR+FI                  L  K+DG  
Sbjct: 224 GYEAVEQLPKEEHERPMLSLDKTKEREALREFIGEHPTL------------LSWKLDGLT 271

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + YE G+ + A  RG+G  GE ++   R    IP  L ++    + +RGE  I+ +DF
Sbjct: 272 IVLTYENGELIKAVTRGNGIVGEVITNNARVFKNIP--LKISFKGRLVLRGEAIITYSDF 329

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQY 255
             +N E I      Y NPRN  SG +R+LN  +IT  R + F+   L     + F   + 
Sbjct: 330 EKIN-ETIGDADAKYKNPRNLCSGSVRQLN-NEITAKRNVRFYAFSLVSAEGVDFRNSRE 387

Query: 256 EMLQKMRCLGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
              + +   GF V    +  A T    + Y+ E  +   T  +  DGLV   D+ +  + 
Sbjct: 388 VQFRWLNEQGFEVVEYRKVTAETLDEAMDYFAEAVT---TNDFPSDGLVALYDDIAYGES 444

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+ PR  ++ K+A++   TRLL+I+    RTG++ PVA  EPV + G  ++ A++H
Sbjct: 445 LGTTAKFPRNAMAFKWADEMRDTRLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVH 504

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K L            + +GD + V +A  +IP++ + +    +        P  C
Sbjct: 505 NISIMKEL-----------KLGIGDTIRVYKANMIIPQIAENLTGSGNA-----PIPHTC 548

Query: 435 PIC-QSRVVRDLN 446
           P C Q  VV+  N
Sbjct: 549 PACGQETVVKKEN 561


>gi|256829851|ref|YP_003158579.1| DNA ligase (NAD(+)) [Desulfomicrobium baculatum DSM 4028]
 gi|256579027|gb|ACU90163.1| DNA ligase (NAD(+)) [Desulfomicrobium baculatum DSM 4028]
          Length = 615

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 174/726 (23%), Positives = 320/726 (44%), Gaps = 151/726 (20%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKI 78
           E   L + ++ ++D Y +   P++ D++YD L  R            R  DP+ P L+++
Sbjct: 10  EAHRLVERLAEYNDAYRR-GAPLVGDAQYDLLLARL-----------RELDPDHPFLHRV 57

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             E      ++ H +P LS +K +  E+L +F+ R+ +   +   + + + + PK+DG  
Sbjct: 58  EPETFSGKREIRHPVPMLSTDKAYTSEELERFVARVEKEAGEIGVSEVRYRVTPKLDG-- 115

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIR--AIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           +  R +   FV    RG+G SG +VS+      IP   R   +         GE+ I ++
Sbjct: 116 LAGRDDGTFFV---TRGNGESGYEVSSAFAKGMIPLGGRGRGV---------GEMVILQS 163

Query: 197 DFLA-LNDEMIAVGRKPYANPRNAASGIL---------RRLNPTDITRYLNFFVHGLGKT 246
            F   L+D         + +PRN   GI+         ++    +  R++ +        
Sbjct: 164 YFQEHLSD--------AFEHPRNLVVGIVSSDTVNELAKKALADEAVRFVPY-------- 207

Query: 247 SEI--FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +E+  +     E+LQ+M  L                        + + + + Y +DG+V 
Sbjct: 208 AELPSWEGSGAELLQRMDAL-----------------------TEELSAQVDYPLDGMVV 244

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           +V +  +++ +G  +   RW I+ K   + A T +  +  Q+GRTG +TPV  +EPVN+ 
Sbjct: 245 EVVDEDVRRTMGATSHHYRWQIAVKRKGETALTVVTGVVWQVGRTGKVTPVLMVEPVNVS 304

Query: 365 GALITNATLHNEDYI--KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           GA I   T HN   +  KGL               G  + + R+GEVIPKV  ++V    
Sbjct: 305 GATIRRVTAHNAGLLEKKGLGP-------------GAEIEIIRSGEVIPKVEAVLV---- 347

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P A   + P+ CP C + + R+ +     L+  +       C  Q ++ ++H+  +   N
Sbjct: 348 PAAT--TLPTACPSCGAALEREND----FLLCRNE-----HCPDQVVQTIEHWF-KTLGN 395

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
            +  G++ ++   +S              +L++  +         +GFG V   NL +++
Sbjct: 396 ADWFGRKTVEKMVRS-----------GYDSLEKVYELGEDDF-RAMGFGPVLSGNLAEAV 443

Query: 543 --NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
             ++ R +   RF+ +LGI  +G   +R L + +         + +++  + +    +  
Sbjct: 444 YLSRTREVEDWRFLAALGIEDLGKGDSRKLLEQF--------RLQDLLTVSRE---RIEA 492

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKE-------VSPSIGRHEKNVSSEIENKKLV 653
           V   G I A +I       R +  V   L+        + P+    EK   S +  K +V
Sbjct: 493 VHGFGAITAASIA------RGLERVGPTLRHLLDLGFRIMPTGAAREKVTDSPLAGKHVV 546

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEE 712
           FTG ++   R   QE     GA+V + ++ KTD +I G+N G SKL KA+Q G  I+ E+
Sbjct: 547 FTGKMRG-SREDMQEEARAQGALVQSAVNSKTDFLICGENVGASKLAKARQFGTAILQED 605

Query: 713 QFLFLL 718
           ++L L+
Sbjct: 606 EYLRLI 611


>gi|118602318|ref|YP_903533.1| DNA ligase (NAD(+)) [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166216237|sp|A1AVV5|DNLJ_RUTMC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118567257|gb|ABL02062.1| DNA ligase (NAD(+)) [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 614

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 170/693 (24%), Positives = 301/693 (43%), Gaps = 114/693 (16%)

Query: 36  YQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK-IGGE-MNLSLFKVTHSI 93
           Y+  KPII D +YD +          + D  ++ DP+  L K I  E  + S  KV    
Sbjct: 20  YRAGKPIISDQDYDFI----------YLDALKNRDPDNLLFKFIETEGQSFSEEKVLLPE 69

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQK--KDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
             LS++K ++ +++ K+I R+ +   +   D ++I     PK+DG      ++ G  +Y 
Sbjct: 70  AMLSIDKAYSWDEISKWIKRLEKSAMQISLDLSAIQIKATPKLDGFS---GFDDGSRLYT 126

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211
             RGDG  G D+S           +   N  E     GE+ I K+ F     + +A    
Sbjct: 127 --RGDGKKGSDISRVFER-----GLCVFNDAERGLGAGEIVIKKSYF----KKYLA---H 172

Query: 212 PYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
            +  PRN                    F   L K   +  + Q  ++ K   L  P    
Sbjct: 173 SFEYPRN--------------------FQASLIKEKALDEQAQKAIIDKA-ALFIPFIKL 211

Query: 272 VRQANTFHGIVSYYNEMKS-IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
              +     +V+ ++++ + +   + +D+DG+V++     L+ Q+G   +  RW I+ K 
Sbjct: 212 PTWSGLVAELVAKFDQIVAQVLVMVDFDVDGVVFEAINTDLKTQMGANRKFHRWQIAFKE 271

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
            + +A  ++L++  Q+GR+G +TPV  LEP  + GA I  AT HN   +K          
Sbjct: 272 NKDKAHVKVLNVIPQVGRSGKITPVVELEPTLLSGATIMRATGHNYGLVK---------- 321

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
             + + VG  V + R+G VIPK++ ++         P   P  CP C   +V   +  T 
Sbjct: 322 -EQGLGVGSVVELTRSGLVIPKIIFVL------KPMPVDIPDNCPSCDKPLVWKSDFLT- 373

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
                  C     C AQ + ++ +F    A N +G G   ++  +     A  IR  + I
Sbjct: 374 -------CINHKNCPAQIIGKMAYFFKILANN-DGFGIATIEKLY-----AHDIRSVSQI 420

Query: 511 FTLQRRQQTSTTKIENI--LGFGDVSVTNLYDSINKRRNISLE--RFIFSLGIRHVGAEI 566
           + L          IE++  +GFG+ +  NL + +N+  +  +E  RF+ + G+  +G   
Sbjct: 421 YALN---------IEDLVTIGFGEKTSMNLINQLNRSVSEQVEDWRFLAAFGMHRMGLGN 471

Query: 567 ARSLAKYYLSYQNF---AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
             +L K +     F    +EI NI               L G II Q ++       +I 
Sbjct: 472 CENLLKSHHLNDIFDLNLKEIANIDGF----------AELTGQIIVQGLISIADEFNHIY 521

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
                L+  +  + +  + ++ E+ +KK+VFTG +    R   +++   +G  VS  +S 
Sbjct: 522 QYGFNLE--TTILTKDLQTLTHELFDKKIVFTGKMNH-SRDDMKKHAKSIGIKVSTSISA 578

Query: 684 KTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
           K D +++GD  G  K++ A++ GV +M E  +L
Sbjct: 579 KIDYLVIGDKVGQKKIKDAEKFGVVVMTETDYL 611


>gi|119945995|ref|YP_943675.1| DNA ligase (NAD(+)) [Psychromonas ingrahamii 37]
 gi|166216251|sp|A1SX61|DNLJ_PSYIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119864599|gb|ABM04076.1| DNA ligase (NAD(+)) [Psychromonas ingrahamii 37]
          Length = 649

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 167/705 (23%), Positives = 304/705 (43%), Gaps = 121/705 (17%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKIGGEMNLSLFKVTH 91
           + +Y+ ++ II DS YDA           F     + +P+ P L  +  E+      V  
Sbjct: 50  NAFYRSAEQIINDSTYDA-----------FLSEFSTYNPDHPYLLTVEPEVLADSKTVPL 98

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYR--FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
               LS +K ++ E+++K+I R+ +        ++ I   + PK+DG      Y+ G  +
Sbjct: 99  PKKMLSTDKAYSFEEIKKWIDRLLKAAIEVGVSESEIQIKVTPKLDGYA---AYDDGISL 155

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF-LALNDEMIAV 208
           Y   RGDG  G+D++        +       +       GE+ I K+ F   L+D+    
Sbjct: 156 YT--RGDGARGQDITRAFNKGLQVANNGDRGLGP-----GEIVIKKSYFDTVLSDK---- 204

Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM----RCL 264
               + N RN  + I                         I  K   E +QK      C+
Sbjct: 205 ----FENSRNIQAAI-------------------------IAEKKVDESIQKAIDVGACV 235

Query: 265 GFP---VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
            FP   + N +        +V + + ++ + S + YDIDG+V +V   +L++ +G     
Sbjct: 236 FFPFLSLENWIGHYTEI--LVDFESIVEKMWSAVDYDIDGVVLEVTNETLKEHMGATRHH 293

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
            RW I+ K   + A  ++L++  Q  RTG +TPVA LEP  + GA I+ AT+H+ + +K 
Sbjct: 294 HRWQIAFKVNAESAEVKVLNVTPQTSRTGRVTPVAELEPTKLSGATISRATVHHYNMVK- 352

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                        +  G  V + R+G VIPK+  +I       A        CP C + +
Sbjct: 353 ----------TNGVGPGAIVQLVRSGLVIPKIEKVI------KAVEPQLAKECPSCGTHL 396

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           + +    +  LV    C     C AQ    L HF  +   N +G G + ++   +     
Sbjct: 397 IWE----SDHLV----CPNKTDCPAQTENTLVHFF-KTLGNNDGFGPKVIEKLHE----- 442

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE--RFIFSLGI 559
           F I+   +I+ L++    S        GFGD +  NL + +   R++ +E  RF+ + G+
Sbjct: 443 FGIKKIHEIYELKQESFVS-------FGFGDKTAQNLVEQLQVSRDVEIEDWRFLAAFGV 495

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
             +       L +++         ++++     +D   L+++     + A AIVE   N 
Sbjct: 496 SRLAGGNCEKLLQHH--------SLDSLFEATVED---LVQLDGFAQVSADAIVEGLANI 544

Query: 620 R-NICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           +     + AL   ++ +    EK+   + +  K +VFTG + +  R   ++    LGA V
Sbjct: 545 KEEFLKLSALNFNLTITPKASEKSPGETPVFGKIIVFTGAMTQGSRGDMEKQAKALGAKV 604

Query: 678 SAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQY 721
           +  ++ KT +++ GD  G+ K+  A+  GV++++E  +L L+  Y
Sbjct: 605 AKSVTGKTSLLVTGDKVGANKINAARDKGVQVLSELDYLALISTY 649


>gi|257793288|ref|ZP_05642267.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
 gi|257787260|gb|EEV25600.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
          Length = 245

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/248 (35%), Positives = 130/248 (52%), Gaps = 14/248 (5%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  L  + SY    YY    P + DSEYD L      I    P+    + P     ++G
Sbjct: 10  ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE   S  KV H  P LSL   +N +DLRKF  RI     ++   ++ +  E KIDG  +
Sbjct: 64  GEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVGYMCELKIDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           +++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+ +  FL
Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+ Q E L
Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236

Query: 259 QKMRCLGF 266
            ++  LGF
Sbjct: 237 DELDKLGF 244


>gi|330995011|ref|ZP_08318931.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
 gi|329757924|gb|EGG74448.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
          Length = 239

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 82/211 (38%), Positives = 117/211 (55%), Gaps = 5/211 (2%)

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFTLEPKIDGTMITIRYEKGKF 148
           H +P LSL+ +++ E+   FI+RI RF    ++ +  + F  EPKIDG  I++ YE G+F
Sbjct: 14  HMVPMLSLDNVFSREEFEGFISRIARFLGLDEEQARQLSFVAEPKIDGLSISLTYEHGRF 73

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
           V    RGDG  GEDV+A +R +  IP  L    P++IE+RGEV++SK  FL LN      
Sbjct: 74  VRGTTRGDGTEGEDVTANLRTLRDIPDQLPAPCPDVIEIRGEVFLSKQAFLELNAAQERA 133

Query: 209 GRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
           G +P+ANPRNAA+G LR+L+   IT  R L+ F +  G  S   A   +  L ++   GF
Sbjct: 134 GDRPFANPRNAAAGSLRQLD-AGITARRPLSLFAYAAGYCSAPLAATHHGYLAQLAAWGF 192

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            VN    Q        ++   +   RS L Y
Sbjct: 193 RVNPLSTQVKDAGAAEAFMERLTLERSALDY 223


>gi|6179416|emb|CAB59902.1| DNA ligase [Campylobacter jejuni]
          Length = 245

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 130/236 (55%), Gaps = 19/236 (8%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHS 92
            YY+  +P+  D EYDAL R       AF +  + E   + P  KI   +     K+ H 
Sbjct: 19  AYYEKDEPLASDEEYDALIREL----RAFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH- 73

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
                L+++W++ED+  F     R W K+      F +EPK DG  + + YE GK V  A
Sbjct: 74  -----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGA 126

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            RGDG  GED++  +  I  IP+  ++N  E IE+RGEV I K+DF  +N++   + +  
Sbjct: 127 TRGDGEVGEDITLNVLEIDNIPK--TINYKEKIEIRGEVVILKDDFEKINEKRALLNQSL 184

Query: 213 YANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
           +ANPRNAASG LR+L+ T IT  R L F+  G+G+ +  F K   E++Q +R LGF
Sbjct: 185 FANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGF 238


>gi|221134260|ref|ZP_03560565.1| DNA ligase (NAD(+)) [Glaciecola sp. HTCC2999]
          Length = 643

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 170/729 (23%), Positives = 318/729 (43%), Gaps = 135/729 (18%)

Query: 14  IEQARKELSSLEQEISYHD--DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +E+A+    + EQ I+  +  +  Y+   P++ D+ YD          H      ++ +P
Sbjct: 25  LEEAQPTSWTDEQLIAVLEATNACYRAGFPLVEDAFYD----------HHLLSALQAREP 74

Query: 72  NGP-LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT- 129
           + P L K+  E+ +S   +T     LS +K ++I ++ K++TRI +     D+ SI  + 
Sbjct: 75  DHPFLLKVEPEI-VSGKTITLPQKMLSTDKAYSITEIEKWVTRIKK---AADELSIPHSD 130

Query: 130 ----LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS-ACIRAIPTIPRVLSLNIPEI 184
               + PK+DG      Y+ G  +Y   RGDG  G+D++ A  R +         N  E 
Sbjct: 131 VNIRITPKLDGYA---AYDDGNTLYT--RGDGVRGQDITRAFTRGLAVA------NQGER 179

Query: 185 IEVRGEVYISKNDF-LALNDEMIAVGRKPYANPRNAASGIL--RRLNPTDITRYLNFFVH 241
               GE+ ISK  F   L+D+        + N RN  + I+  +++ P+ +         
Sbjct: 180 GLGPGEIVISKQYFDTFLSDQ--------FENSRNIQAAIIAEKKIEPSVV--------- 222

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE-----MKSIRSTLP 296
                         + +Q   C+ +P          + G++    E     ++ I   + 
Sbjct: 223 --------------KAIQDEACVFYPF----ALLPNWTGLIDVLAEDVEARIEPIWQAVD 264

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           YDIDG++ +     ++  LG      RW I+ K  ++ A   +L +  Q  RTG ++PVA
Sbjct: 265 YDIDGVILETTHPDIKAHLGATRHHHRWQIAFKVNDESAEVEVLSVTPQTSRTGRVSPVA 324

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            L P  + GA I+ AT+H+ + ++              +  G  V + R+G VIPK+  +
Sbjct: 325 ELVPTKLSGATISRATVHHYNMVQ-----------SNGVGPGAIVQLVRSGLVIPKIEKV 373

Query: 417 I--VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
           I  V  + PDA        CP C S ++ + +     L+    C     C AQ+   L H
Sbjct: 374 ITAVTPQLPDA--------CPSCHSHLIWEAD----HLI----CPNKNDCPAQRENTLVH 417

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F  +   N +G G + ++   ++      ++   DI+ L      +        GFG+ +
Sbjct: 418 FF-KTLGNNDGFGPKVVEKLCQN-----GVKHIHDIYALGPVDLMA-------WGFGEKT 464

Query: 535 VTNLYDSINKRRNISLE--RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
             NL + +N  R++++E  RF+ + GI  +G      L +++   + F   ++       
Sbjct: 465 ALNLVEQLNVSRSVAIEDWRFLAAFGITRLGGGNGEKLLQHHTLSELFDLTVD------- 517

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRN-ICAVEALLKEVSPSIGRHEKNVSSEIE-NK 650
               +++ +     + A+AIVE   N +     V  L   +  +    E +++  +   K
Sbjct: 518 ----AMVEIDGFAQLSAEAIVEGLANVKTEFFKVYELGFNLIVTPKLSESDLADTVLFGK 573

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIM 709
           ++VFTG++    R   +++   LGA V   +S  T  +I GD  G+ K+  A+  GV ++
Sbjct: 574 QVVFTGSMTSGSRSDMEKHAKTLGAKVGKSVSGNTTYLITGDKVGANKINAARDKGVTVL 633

Query: 710 NEEQFLFLL 718
            E ++L ++
Sbjct: 634 TELEYLAMI 642


>gi|300714635|ref|YP_003739438.1| NAD-dependent DNA ligase [Erwinia billingiae Eb661]
 gi|299060471|emb|CAX57578.1| Putative NAD-dependent DNA ligase [Erwinia billingiae Eb661]
          Length = 563

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 153/655 (23%), Positives = 267/655 (40%), Gaps = 135/655 (20%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A +  +A +E+++LE ++S  DD YY+  +  + D  YDAL  +  +  H F   A   D
Sbjct: 21  AWTPARAEQEMNALENQLSAWDDAYYRAGEQKVPDDRYDALALKYQSWQHCF---APGSD 77

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              P     G       KV H +  + ++K+ + + L +++      W           +
Sbjct: 78  LRQPALARNG-------KVLHPVAHVGVKKVADQQALSRWMAGKDALW-----------V 119

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y++GK      RG+G  GED +   R IP IP+ ++L    ++ ++GE
Sbjct: 120 QPKVDGVAVTLHYKRGKLAQVISRGNGLQGEDWTEKARFIPDIPQQIALGSDSLV-LQGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +Y+   D    + + +  G     N R   +G +RR  P+D    L  F+          
Sbjct: 179 LYLKMTD----HQQTLLGG----LNARATVAGAMRRNAPSDTLNRLGIFIWAWPDGPATL 230

Query: 251 AKGQYEMLQKMRCLGFPV----NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                E ++++   GFP+    +  VR A    G    + E +     LP+  DG+V   
Sbjct: 231 ----RERIERLSEAGFPMMGEWSKPVRSAEEVAG----WRE-RWFAQPLPFVTDGVVVHS 281

Query: 307 DEF-SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
                   Q GE A    W ++ K+     +T +  +D  IGRTG ++ V  L PV +  
Sbjct: 282 QPVKGAYWQPGENA----WSVAWKYPPATVTTEVRSVDFPIGRTGKISTVLNLVPVKLDD 337

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH- 422
             ++   + + +  +  D           I  GD+V V  AG+ IP++ +++  V +R  
Sbjct: 338 KQVSRVNVGSFNRWREAD-----------IVAGDQVAVSLAGQGIPRLDEVVWRVADRTL 386

Query: 423 ---PDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
              PDA    P S  S  P+C+ +++  L   +G+  AA   +G    + Q++       
Sbjct: 387 PELPDATLFHPLSCFSLTPVCRQQLLARLVWLSGR--AALTLSGASESTWQRI------- 437

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
                    +   QL   F                TL      +  ++  I G       
Sbjct: 438 ---------MQSGQLTHLFS-------------WLTL------TAEQLSQIAGITPARAN 469

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            LY   N+      +R++ +LG+                   N A     + A ++D+W 
Sbjct: 470 QLYHQFNQTHQQPFKRWVRALGV----------------PVPNKA-----LDALDDDNWQ 508

Query: 597 SLI--------RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKN 642
           SL+        R+P +G+  A  IV F Q+P     +  L   +  SI  +HE N
Sbjct: 509 SLLSRKVADWQRLPEIGERRAGQIVTFLQHPDVQALIAFLSTHLQQSISVQHEGN 563


>gi|307543787|ref|YP_003896266.1| NAD-dependent DNA ligase LigB [Halomonas elongata DSM 2581]
 gi|307215811|emb|CBV41081.1| NAD-dependent DNA ligase LigB [Halomonas elongata DSM 2581]
          Length = 561

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 150/609 (24%), Positives = 256/609 (42%), Gaps = 103/609 (16%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A +EL++L   +   +  Y +     + D  YD  + R +A    FPD+  S DP   L
Sbjct: 28  HAERELAALHDRLDAWERAYRRNGSSPVSDDIYDQAQARFEAWQDCFPDI--SVDPAPTL 85

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +   GE+       +H +P   L K+ ++ +   ++ R       +DD      L+PK+D
Sbjct: 86  DPPDGEL-------SHPVPQSGLAKLDDVVEAGAWLAR-------RDD----VWLQPKVD 127

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ YE+G+   A  RGDG SG+D +A  R IP +P  L     + + +RGE+Y   
Sbjct: 128 GVAVTLVYEQGELSQAISRGDGLSGQDWTAKARFIPDVPDRLPTQ--QRLVLRGELY--- 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
              L L+  + A   +  A  R+  +G L R +      R +  FV           K  
Sbjct: 183 ---LKLDGHVQA--ERGAAGARSVVAGWLARDSLDGAKARQIGLFVWDWPDGP----KAL 233

Query: 255 YEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            E L ++  LGFP   +    A +   ++S  ++    R+ LP+  DG+V K      Q+
Sbjct: 234 PERLARLAELGFPDTTDWTLPAESLEAVLSQRDDW--YRTPLPFATDGVVLKQG----QR 287

Query: 314 QLGERARS---PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             GE AR+   P W  + K+  +    R+  ++ ++GRTG +TP+  L P  + G  I  
Sbjct: 288 PGGE-ARTEAPPDWAAAWKYPPRSVLARVRGVEFRVGRTGRITPLLHLVPETLAGRSIRR 346

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN-ERHPDAQPFS 429
            T+ +    + L           DIR GD V +  AG+ IP++  +       P+ +P  
Sbjct: 347 VTVGSLGRWQTL-----------DIRPGDVVTISLAGQTIPRLDSVAWRAAERPEVEP-- 393

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
                P      +   +P  G             C  Q LERL      +A ++ G+G  
Sbjct: 394 ----PPASDYNALSCWHPSPG-------------CKGQFLERLAWLGGPEALDLAGVGAG 436

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                ++S   A  ++   D  +L      S   ++   G G+V    L +     R   
Sbjct: 437 T----WRSLVEAGLVKDLLDWMSL------SAETLQAASGIGEVRGRQLVEVFATARQRP 486

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            + ++ +LG    GA              + A E + + + + + W +L   P VG+  A
Sbjct: 487 FDAWLEALGAPS-GA------------LADEATEWSTLASRDLEQWRAL---PEVGETRA 530

Query: 610 QAIVEFYQN 618
           +A+ +F+ N
Sbjct: 531 EALHDFFAN 539


>gi|327482626|gb|AEA85936.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri DSM 4166]
          Length = 553

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 134/549 (24%), Positives = 229/549 (41%), Gaps = 87/549 (15%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR+E+  L+ +++  DD Y++  + ++ D  YD  + + D     F     + DP   L
Sbjct: 27  RARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCFVGTGAAPDP---L 83

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
              GG +        H I    L K+ + + +  +I R    W           ++PKID
Sbjct: 84  QDAGGPLR-------HPIRQTGLVKLADEQAVATWIARRRDLW-----------IQPKID 125

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y  G    A  RGDG +G+D +A  R +  IP    L +P+ + ++GE+Y   
Sbjct: 126 GVAVTLVYRHGALQQAISRGDGLTGQDWTANARRLAAIP--ARLAVPDEVILQGELYWRL 183

Query: 196 NDFL-ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           +  + A +    A GR   A    A++G+ R     D    +  FV         +  G 
Sbjct: 184 DRHVQASHGSAGARGRVAGAM---ASNGLDR-----DTAARIGLFVWD-------WPNGP 228

Query: 255 YEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             M   L ++  LGFP      Q         ++ E    R  LP+  DG+V + +    
Sbjct: 229 DSMNARLGQLAALGFPDTQAFSQPVETLEHARHWRE-HWYRQALPFATDGVVLRQE---- 283

Query: 312 QKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           Q+   ER ++ P W  + K+  ++A T + D++ +IGRTG +TP+ +L PV +    +  
Sbjct: 284 QRPPAERWQAEPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDDRRVRT 343

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +L + D  + L           D+R GDRV V  AG  IP++  ++   RH +  P + 
Sbjct: 344 LSLGSLDRWQAL-----------DVRPGDRVAVALAGHSIPQLDSVVW--RHTERAPVAA 390

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P              +P+     +  R   G  C  Q L RL     R    +EG+G   
Sbjct: 391 P--------------DPRRYHPDSCWRPAPG--CDQQFLARLVWLGGRQGLALEGVGAGS 434

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                ++        +P  +  L    +     +E + G G      L  S  + R   L
Sbjct: 435 WQALLEAG------LLPDLLAWL----ELDAAALEQVPGIGKARANKLAASFARARQRPL 484

Query: 551 ERFIFSLGI 559
            +++ +LG+
Sbjct: 485 AQWLKALGL 493


>gi|145627933|ref|ZP_01783734.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21]
 gi|145640788|ref|ZP_01796371.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|144979708|gb|EDJ89367.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21]
 gi|145274714|gb|EDK14577.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21]
          Length = 278

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 143/277 (51%), Gaps = 21/277 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S+ P     +
Sbjct: 5   QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131
           +G +      ++ H IP LSL+  ++  +   F+ RI       +D  I       F  E
Sbjct: 62  VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGE
Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248
           V++    F  LN   +    K +ANPRNAA+G LR+L+P +IT  R L    +G+G    
Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSY 284
           +      Y  LQ ++ +G PVN  +R  N    ++ +
Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGF 270


>gi|330879795|gb|EGH13944.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 281

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/271 (33%), Positives = 139/271 (51%), Gaps = 37/271 (13%)

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHN D         +V R G  + +GD V+++RAG+VIP+VV ++   R  +A+
Sbjct: 1   MVANATLHNMD---------EVARLG--LMIGDTVIIRRAGDVIPQVVQVVAERRPENAR 49

Query: 427 PFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDA 480
               P  CP+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A
Sbjct: 50  AVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRA 109

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IEGLG + ++     +     I  PAD++ L+  Q      I ++ GF ++S   L  
Sbjct: 110 MDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLK 159

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +          
Sbjct: 160 AIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY---------- 209

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           +P VG  +A  I  F+++  N   ++ALL E
Sbjct: 210 LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 240


>gi|269469037|gb|EEZ80601.1| NAD-dependent DNA ligase [uncultured SUP05 cluster bacterium]
          Length = 398

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 202/426 (47%), Gaps = 61/426 (14%)

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           +D+DG+V++V   +L+  +G   +  RW I+ K  + +A  ++L +  Q+GRTG +TPVA
Sbjct: 21  FDVDGVVFEVTNENLKNYMGANRKFHRWQIAFKENKDKAQVKVLSVTPQVGRTGKITPVA 80

Query: 357 RLEPVNIGGALITNATLHNEDYIK--GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            LEP  + GA I  AT H+   +K  GL A             G  + + R+G VIPK+ 
Sbjct: 81  ELEPTLLSGATIVRATGHHYGLVKEQGLGA-------------GSVIELTRSGLVIPKIN 127

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            ++       + P   P  CP C       L  ++  L+    C     C AQ + ++++
Sbjct: 128 QVL------KSAPVKIPKLCPSCS----EALEWESDFLM----CVNHDLCPAQVIGKMEY 173

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F    A N +G G   ++  ++       IR  + I+ L     +        +GFGD +
Sbjct: 174 FFKILANN-DGFGIATIEKLYEH-----GIRKISQIYALSASDLSD-------MGFGDKT 220

Query: 535 VTNLYDSINKRRNISLE--RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            TNL + + +  N  +E  RF+ + G+  +G     +L K Y   + F   +  I A + 
Sbjct: 221 STNLVNQLKRSTNEQIEDWRFLAAFGVVRMGTGNCENLLKSYPLNEIFELNLEQISAIDG 280

Query: 593 DDWLSLIRVPLVGDIIAQAIV---EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
                        ++ AQ IV   +  Q   N+ +      E++ S+ ++ +  +  +  
Sbjct: 281 -----------FAELTAQMIVTGLKIIQTEFNLLSRYRFNLEIT-SLQKNLEEFTHVLFG 328

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKI 708
           KK+VFTG +Q   R K +++   +G  +   +S KTD ++VG+  G  K+E A++ GVK+
Sbjct: 329 KKIVFTGKMQG-SRDKMKKHAKSIGIKILTSVSAKTDYLVVGEKVGQKKIESAKKFGVKV 387

Query: 709 MNEEQF 714
           ++EE +
Sbjct: 388 LSEEDY 393


>gi|229593084|ref|YP_002875203.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens SBW25]
 gi|257096558|sp|C3K3F7|LIGB_PSEFS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|229364950|emb|CAY53062.1| putative exported DNA-ligase protein [Pseudomonas fluorescens
           SBW25]
          Length = 554

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 146/625 (23%), Positives = 248/625 (39%), Gaps = 113/625 (18%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++AR  +S+L ++I   DD Y++  +  + D  YD  ++R       FP  A +  PN P
Sbjct: 24  DEARAHVSTLAEQIRQWDDSYHRLGQSPVSDELYDQARQRLAQWHQCFP--APTATPNTP 81

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           L    G          H +    LEK+ +   +  ++      W           ++PK+
Sbjct: 82  LASSRGAQ-------PHPVAHTGLEKLLDEHAVDAWLGTRKDVW-----------IQPKV 123

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+ Y++G+      RGDG  G D SA  R IP I  V  L  P  + ++GE+Y  
Sbjct: 124 DGVAVTLVYQQGRLRQVISRGDGVMGHDWSASARKIPGI--VQQLPDPIDLVLQGELYWR 181

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAK 252
            +D +      +        N R+  +G++ R  L  TD    +  FV    +    F  
Sbjct: 182 LDDHVQSASGGL--------NARSKVAGLMNRKHLGDTDAAG-IGLFVWAWPQGPAAFT- 231

Query: 253 GQYEMLQKMRCLGF--------PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              E L  ++  GF        P+ N    A   H    +Y         LP+  DG+V 
Sbjct: 232 ---ERLSTLKRWGFTDTQRFSQPIRNISEAA---HWRAYWYGH------PLPFASDGVVL 279

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
              + +  ++   +  +P W  + K+   +A   + D+  +IGRTG +TP+  LEPV + 
Sbjct: 280 HQAQHAPAERW--QVSTPYWAAAWKYPTTKALALVRDVQFKIGRTGRITPMLELEPVRLD 337

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              I+  +  +    + L           DIR GD V +  AG+VIP++ ++I+      
Sbjct: 338 DRQISRVSAGSLKRWQSL-----------DIRPGDHVSISLAGQVIPRLDEVIL------ 380

Query: 425 AQPFSFPSFCPICQSRVVRDLN-PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
                        +S    DL  P  GK  A         C  Q L RL          +
Sbjct: 381 -------------RSSTRADLPVPNPGKFHALSCWQLDPGCEEQLLARLSWLSGNQGLAL 427

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
             +G++      ++   A  +    D  TL       T ++ NI GFGD +   + DS +
Sbjct: 428 PHIGRETWSVLIQAGLIAGFL----DWLTL------DTAELANIDGFGDRTRARVVDSFH 477

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R     +++ +LG+       AR+         N   +   ++A +   WL+   +  
Sbjct: 478 SARQRPFAQWLKALGV----PPAARN---------NLEGDWQTLVARDTQAWLA---IDG 521

Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL 628
           +G   A  +  F+++P      E L
Sbjct: 522 IGPGRAAQLSAFFRDPHVQALAETL 546


>gi|325474099|gb|EGC77287.1| hypothetical protein HMPREF9353_01637 [Treponema denticola F0402]
          Length = 437

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 209/441 (47%), Gaps = 63/441 (14%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN-K 77
           K +  LE+ I  H D YY  ++P I D+E+DAL     A+           DP   L   
Sbjct: 5   KRILDLEKTIKKHQDLYYN-AQPEISDAEFDALWDELKAL-----------DPQNKLFFT 52

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +  E      K  H IP  S EK  +      +  ++  F +        + ++ K+DG 
Sbjct: 53  VPLESTDGFAKSEHIIPMGSQEKAADPPSFEAWALKM-PFKE--------YIVQYKMDGA 103

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + ++YE+G FV A  RGDG  G+D++  +  +  + + +++N        G  Y +K  
Sbjct: 104 SLELQYEEGHFVRAVTRGDGKIGDDITENVLKMKGLIKDITVN-------EGPAYGTKPF 156

Query: 198 FLALNDEMIAVGR------KPYANPRNAASGILRRLNPTDITRYLNFFVH-------GLG 244
              +  E+I +        K  AN RNAA+G++++ N  ++  +LN F +       G  
Sbjct: 157 SGGIRCEVIMLRSIHQKYFKDKANCRNAANGLMKKKN-GELCEHLNLFAYDAVQGSIGNP 215

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            T +   K + E L  ++  GF     V+   +   ++ Y   +  IR +L YDIDGLV 
Sbjct: 216 FTGDAPFKTESEKLVWLKEAGFNCVE-VKYCKSIDEVIEYRAHVMDIRPSLDYDIDGLVI 274

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDI-QIGRTGILTPVARLEPVNI 363
           K D  ++  +  +RAR P   I+ KF+ ++A T L +I+  + G T   TP+A +EPV +
Sbjct: 275 KND--TIDPEDMKRAR-PEKQIAFKFSLEEAVTVLKEIEWSESGAT--YTPIALIEPVRL 329

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  A+L N + I+ L           ++++G RV+V + GE+IPK+  +   E  P
Sbjct: 330 AGTTVKRASLANPNIIRAL-----------NLKIGSRVVVTKRGEIIPKIEALA--ENPP 376

Query: 424 DAQPFSFPSFCPICQSRVVRD 444
           + +   +P  C +C S +  +
Sbjct: 377 NVKEIEYPDTCSVCGSPLTNE 397


>gi|70733074|ref|YP_262847.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens Pf-5]
 gi|123761963|sp|Q4K4I6|LIGB_PSEF5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|68347373|gb|AAY94979.1| DNA ligase, NAD-dependent, putative [Pseudomonas fluorescens Pf-5]
          Length = 556

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 144/583 (24%), Positives = 243/583 (41%), Gaps = 100/583 (17%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +A  E+++L+Q++   D  YY+  + ++ D  YD  ++R       FP   R+ D   
Sbjct: 25  VPRATDEITALQQQLQRWDSSYYRDGRSLVADELYDQARQRLLTWRQCFPQAPRAMD--Q 82

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           PL   GG        + H IP   +EK+ +   +  ++       + +DD       +PK
Sbjct: 83  PLLGAGG-------SIRHPIPHTGVEKLADANAVTGWL-------KGRDD----IWAQPK 124

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y +G+F  A  RGDG  G D +     I  IP+   L  P  + ++GE+Y 
Sbjct: 125 VDGVAVTLIYHRGQFQQALSRGDGVHGHDWTRAAWQIEAIPK--RLPRPVDLLLQGELY- 181

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
                  L  E     R      RN  +G + R   T      +  FV    +     + 
Sbjct: 182 -------LRLEQHVQARSGSLKARNRVAGWMARKQLTAAEAAQIGLFVWDWPQGPATLS- 233

Query: 253 GQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              E L+++  LGF       R    F     +    +  RS LP+  DG++ +      
Sbjct: 234 ---ERLEQLADLGFAEPREYSRPVGGFADAQQW--RARWYRSPLPFASDGIILRQS---- 284

Query: 312 QKQLGER--ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++   ER  A++P W+ + K+   Q    +  +D +IGRTG +TP+  +EPV +    I 
Sbjct: 285 RRPAAERWQAKAPYWIAAWKYPYAQVLASVRQVDFRIGRTGRITPLLEIEPVTLDDRQIR 344

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE------RHP 423
             +L +    + L           DI  GD+V +  AG  IP++ ++++        + P
Sbjct: 345 RVSLGSLQRWRSL-----------DIVPGDQVAISLAGLSIPRLDEVVLRSTLRQSIQPP 393

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               F F S C            P  G             C  Q L RL    S+   N+
Sbjct: 394 READFHFLS-C----------WQPSPG-------------CEEQFLARLTWLSSKQGLNL 429

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           + +G +      ++      I+   D  TL +       ++ NI GFGD S   L +S++
Sbjct: 430 QNIGSRTWARLVETG----RIKGLLDWLTLDQ------AELANIAGFGDRSSKRLLESLH 479

Query: 544 KRRNISLERFIFSLGIRHVG-AEIA---RSLA-KYYLSYQNFA 581
             R     R++ +LGI   G A+++   ++LA K  L +QN A
Sbjct: 480 SARQQPFPRWLKALGIPPSGSADLSGPWQALAMKNSLDWQNEA 522


>gi|166226374|sp|A4VRF3|LIGB_PSEU5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 556

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 132/549 (24%), Positives = 228/549 (41%), Gaps = 87/549 (15%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR+E+  L+ +++  DD Y++  + ++ D  YD  + + D     F     + DP   L
Sbjct: 30  RARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCFVGTGAAPDP---L 86

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
              GG +        H +    L K+ + + +  +I R    W           ++PKID
Sbjct: 87  QDAGGPLR-------HPVRQTGLVKLADEQAVATWIARRRDLW-----------IQPKID 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y  G    A  RGDG +G D +A  R +  IP    L +P+ + ++GE+Y   
Sbjct: 129 GVAVTLVYRHGALQQAISRGDGLTGHDWTANARRLAAIP--ARLAVPDEVILQGELYWRL 186

Query: 196 NDFL-ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           +  + A +    A GR   A    A++G+ R     +    +  FV         +  G 
Sbjct: 187 DRHVQASHGSAGARGRVAGAM---ASNGLDR-----NTAARIGLFVWD-------WPNGP 231

Query: 255 YEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             M   L ++  LGFP      Q         ++ E    R  LP+  DG+V + +    
Sbjct: 232 DSMNARLGQLAALGFPDTQAFSQPVETLEHARHWRE-HWYRQALPFATDGVVLRQE---- 286

Query: 312 QKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           Q+   ER ++ P W  + K+  ++A T + D++ +IGRTG +TP+ +L PV +    +  
Sbjct: 287 QRPPAERWQAEPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDDRRVRM 346

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +L + D  + L           D+R GDRV V  AG  IP++  ++   RH +  P + 
Sbjct: 347 LSLGSLDRWQAL-----------DVRPGDRVAVALAGHSIPQLDSVVW--RHTERAPVAA 393

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P              +P+     +  R   G  C  Q L RL     R    +EG+G   
Sbjct: 394 P--------------DPRRYHPDSCWRPAPG--CEQQFLARLVWLGGRQGLALEGVGAGS 437

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                ++        +P  +  L    +     +E + G G      L  S  + R   L
Sbjct: 438 WQALLEAG------LLPDLLAWL----ELDAAALEQVPGIGKARANKLAASFARARQRPL 487

Query: 551 ERFIFSLGI 559
            +++ +LG+
Sbjct: 488 AQWLKALGL 496


>gi|146284243|ref|YP_001174396.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri A1501]
 gi|145572448|gb|ABP81554.1| DNA ligase, NAD-dependent, putative [Pseudomonas stutzeri A1501]
          Length = 597

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 132/549 (24%), Positives = 228/549 (41%), Gaps = 87/549 (15%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR+E+  L+ +++  DD Y++  + ++ D  YD  + + D     F     + DP   L
Sbjct: 71  RARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCFVGTGAAPDP---L 127

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
              GG +        H +    L K+ + + +  +I R    W           ++PKID
Sbjct: 128 QDAGGPLR-------HPVRQTGLVKLADEQAVATWIARRRDLW-----------IQPKID 169

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y  G    A  RGDG +G D +A  R +  IP    L +P+ + ++GE+Y   
Sbjct: 170 GVAVTLVYRHGALQQAISRGDGLTGHDWTANARRLAAIP--ARLAVPDEVILQGELYWRL 227

Query: 196 NDFL-ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           +  + A +    A GR   A    A++G+ R     +    +  FV         +  G 
Sbjct: 228 DRHVQASHGSAGARGRVAGAM---ASNGLDR-----NTAARIGLFVWD-------WPNGP 272

Query: 255 YEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             M   L ++  LGFP      Q         ++ E    R  LP+  DG+V + +    
Sbjct: 273 DSMNARLGQLAALGFPDTQAFSQPVETLEHARHWRE-HWYRQALPFATDGVVLRQE---- 327

Query: 312 QKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           Q+   ER ++ P W  + K+  ++A T + D++ +IGRTG +TP+ +L PV +    +  
Sbjct: 328 QRPPAERWQAEPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDDRRVRM 387

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +L + D  + L           D+R GDRV V  AG  IP++  ++   RH +  P + 
Sbjct: 388 LSLGSLDRWQAL-----------DVRPGDRVAVALAGHSIPQLDSVVW--RHTERAPVAA 434

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P              +P+     +  R   G  C  Q L RL     R    +EG+G   
Sbjct: 435 P--------------DPRRYHPDSCWRPAPG--CEQQFLARLVWLGGRQGLALEGVGAGS 478

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                ++        +P  +  L    +     +E + G G      L  S  + R   L
Sbjct: 479 WQALLEAG------LLPDLLAWL----ELDAAALEQVPGIGKARANKLAASFARARQRPL 528

Query: 551 ERFIFSLGI 559
            +++ +LG+
Sbjct: 529 AQWLKALGL 537


>gi|288575281|ref|ZP_06393611.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996]
 gi|288568349|gb|EFC89909.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996]
          Length = 446

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 188/453 (41%), Gaps = 137/453 (30%)

Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERH-------------------------------- 422
           +RVGD V+V+RAG+VIP+VV +I   R                                 
Sbjct: 1   MRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDDLKQQQDDLFAETPSANQTQSV 60

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ + L HF SR A +
Sbjct: 61  PLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRAQGLIHFASRKAMD 114

Query: 483 IEGLGKQQLDFFFKSEDPA--FSIRIPADIFTLQR-RQQTSTTKIENILG-----FGDVS 534
           I+GLG++Q++    ++D    F+     DI TLQ+ ++       EN  G      GD+S
Sbjct: 115 IDGLGQKQIEQLV-AQDLVRHFADLYRLDIPTLQKMKEMADKASSENENGDAETVSGDLS 173

Query: 535 --------------VTNLYDSINKRRNISLERFIFSLGIRH------------------- 561
                           N+   I   +   L RF+F+LGIRH                   
Sbjct: 174 EPNTQTGKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGSLEHV 233

Query: 562 -------------VGAEIARSLAKYYLSYQNFAQEINNIIAHN----------------- 591
                        +G  +ARS+A ++      A  I+ ++A                   
Sbjct: 234 RRAPEPILACLPDIGTVVARSIAHFFAQDAQQAM-IDELLAAGVVPQTQTVTIPPARHAE 292

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEF-----------------YQNPRNICAVEALLKEVSP 634
              W++ +    + +  AQA+ E                  +Q  R+     ALL+ +  
Sbjct: 293 PQHWIARLPGFKISENKAQALWELAGKSIEGLQTDKALPADWQTWRSEAQNTALLENLKT 352

Query: 635 SIGRHEKNVSSE---------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
              +       E         +  K  V TGTL  ++R +AQ  +   G  VS  +S+KT
Sbjct: 353 FFAQTSSKNQDEAFSDGLNEAVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKT 412

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           D ++ G+  GSKLEKA  LGV +++EE+ L +L
Sbjct: 413 DYVVAGEAAGSKLEKANALGVAVLSEEELLAML 445


>gi|312878358|ref|ZP_07738269.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794859|gb|EFR11277.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A]
          Length = 259

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/230 (36%), Positives = 123/230 (53%), Gaps = 9/230 (3%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P
Sbjct: 3   EFIKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG++     +V H +P LSL  ++N  +L  F  R+       + +   + +E KI
Sbjct: 60  TQRVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ 
Sbjct: 117 DGLSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           K++F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  +
Sbjct: 175 KDEFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNV 224


>gi|148244425|ref|YP_001219119.1| DNA ligase (NAD+) [Candidatus Vesicomyosocius okutanii HA]
 gi|166216276|sp|A5CXB8|DNLJ_VESOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146326252|dbj|BAF61395.1| DNA ligase (NAD+) [Candidatus Vesicomyosocius okutanii HA]
          Length = 632

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 160/692 (23%), Positives = 298/692 (43%), Gaps = 112/692 (16%)

Query: 36  YQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP- 94
           Y+  KPII + +YD +          +    ++++PN PL K       +  +    +P 
Sbjct: 36  YRSGKPIISNEDYDFI----------YLATLKNKEPNNPLFKSIEPEGRAFAEEKVLLPE 85

Query: 95  -TLSLEKIWNIEDLRKFITRIYR--FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
             LS++K ++  ++ K+I R+ +       D N+I     PK+DG      ++ G  +Y 
Sbjct: 86  LMLSIDKAYSWNEMSKWIERLEKSGMLIGLDLNAIQIKATPKLDGFA---GFDDGNRLYT 142

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211
             RGDG  G D+S   +    + +     +       GE+ + K+ F     E   V   
Sbjct: 143 --RGDGKKGSDISRVFKRGLCVFKDSGRGLGA-----GEIVVKKSYF-----EKYLVHSF 190

Query: 212 PYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK----MRCLGFP 267
            Y  PRN  S ++                    K   +  + Q  ++ K    +  +  P
Sbjct: 191 EY--PRNFQSSLI--------------------KEKALDEQAQKAIIDKGALFVPFIKLP 228

Query: 268 VNNGVRQANTFHGIVSYYNEMKS-IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           + +G     +   +V+ + E+ S +   + +D+DG+V++V    L+ Q+G   +  RW I
Sbjct: 229 IWSG-----SMTELVAKFEEIVSQVLVMVDFDVDGVVFEVINIDLKTQMGANRKFHRWQI 283

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           + K  +     ++L++  Q+GR+G +TPVA +EP  + GA I   T H+   +K      
Sbjct: 284 AFKENKDIVQVKVLNVMPQVGRSGKITPVAEVEPTLLSGATIVRVTGHHYGLVK------ 337

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 + + +G  V + R+G VIPK++ ++         P   P  C  C   +V +  
Sbjct: 338 -----EQGLGIGSVVELTRSGLVIPKIISVL------KPMPVDIPDNCLSCGMPLVWE-- 384

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
             +  LV    C     C AQ + R+ +F    A N +G G   ++  +     A +IR 
Sbjct: 385 --SDFLV----CVNHKNCPAQIIGRITYFFKVLANN-DGFGIATVEKLY-----AHNIRS 432

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE--RFIFSLGIRHVGA 564
            + I+TL   +  +       +GFG+ +  NL   +++  +  +E  RF+ + G+  +G 
Sbjct: 433 VSQIYTLNVERLMA-------IGFGEKTSINLISQLSRSISEKIEDWRFLAAFGMHRMGL 485

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
               +L K Y     F   +  I    N D  +     L   +I Q +V        I  
Sbjct: 486 GNCENLLKSYRLNDIFDLTLEQI---TNIDGFA----ELTAQVIVQGLVSIVDEYNQIYQ 538

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
               L   +    +  + +  E+ +K++VFTG +    R++ +++   +G  VS  +S K
Sbjct: 539 YNFNLD--TTVFTKDLQTLMHELFDKRIVFTGKMN-CPRNEMKKHAKLVGIKVSTTISTK 595

Query: 685 TDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFL 715
            D +++G   G  K++ A++LGV +M E  +L
Sbjct: 596 IDYLVIGSRVGQKKIQNAEKLGVVVMTEADYL 627


>gi|126669208|ref|ZP_01740125.1| hypothetical protein MELB17_00020 [Marinobacter sp. ELB17]
 gi|126626327|gb|EAZ97005.1| hypothetical protein MELB17_00020 [Marinobacter sp. ELB17]
          Length = 490

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 142/554 (25%), Positives = 240/554 (43%), Gaps = 96/554 (17%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           +E+ +   +D Y      II DS+YDAL            +LAR +  +  L ++  E +
Sbjct: 21  IEESLERANDAYRNTDDSIISDSDYDAL----------IDELARRDPGHALLTEVESEAD 70

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-IFFTLEPKIDGTMITIR 142
               KV H IP LS EK+    +L  ++ R+    Q     + +  ++  K+DG  +  R
Sbjct: 71  FGAGKVRHQIPMLSTEKVKTDSELSAWVRRVESAAQNIGIRTPVLLSVTAKLDG--MAGR 128

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
            + G     A RGDG +G +++  +      P+++   + +     GE+ + ++ F    
Sbjct: 129 LKDGVL---ASRGDGLTGNNITHIL------PKLVVHGVGD-----GELVMIQSYF---- 170

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
           DE ++   + + +PRN  +G +    P          +  L   S  F    +  L ++ 
Sbjct: 171 DEHLS---EEFKHPRNVVTGAVGADTPRPAA------MKALNDHSIHFV--SFTTLTRID 219

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKS-IRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
                      + +T   IV+   E++  +    PY  DGLV  V+   L+K+LG     
Sbjct: 220 S----------RTDT---IVAQLPEIREYLLGNTPYPTDGLVLAVESPELRKELGSTGHH 266

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
             WM++ K   + A+T ++ +  QIG+TG LTPV +L+ V + GA+I N T HN      
Sbjct: 267 HNWMVAAKTVGETATTAVVGVQWQIGKTGRLTPVIQLKKVTLSGAVIANVTGHN------ 320

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
              +GKV   G D  VG    + R+GE+IP +V        P     S P+ CP C   +
Sbjct: 321 ---AGKVEEMGID--VGAMATITRSGEIIPFLVSAT-----PAPNGASLPTHCPACTEHL 370

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R    +   LV  +       C  ++  RL HF     FNI G     +D F      A
Sbjct: 371 KR----RGDFLVCINN-----ECEGRRHARLHHF-----FNIIG----SIDLFGPV---A 409

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN--KRRNISLERFIFSLGI 559
               I A + ++Q     +  + E  +GFG     NL   +   K R +   R + ++GI
Sbjct: 410 CDKLIAAGVRSIQEVFAITAAEFE-AMGFGPGQSANLVAELEAAKTRPVDDFRVLAAMGI 468

Query: 560 RHVGAEIARSLAKY 573
            ++G   ++ L ++
Sbjct: 469 SNLGRGDSKKLLRH 482


>gi|146305490|ref|YP_001185955.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina ymp]
 gi|172046035|sp|A4XPF7|LIGB_PSEMY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|145573691|gb|ABP83223.1| DNA ligase (NAD(+)) [Pseudomonas mendocina ymp]
          Length = 562

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 150/632 (23%), Positives = 249/632 (39%), Gaps = 130/632 (20%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q  P       +A+ E ++L Q+I+  DD Y+   +  I D  YD  + R       F  
Sbjct: 18  QAEPCPDWPDSRAQVEFAALSQQIAQWDDAYHNQGRSPIADELYDQARERLQRWQQCFAP 77

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
            AR   P  PL    G        + H +P   L K+ N   + ++I         +DD 
Sbjct: 78  -ARQPLPE-PLTGSAG-------PIAHPVPQTGLRKL-NDAAIGEWIG-------SRDD- 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PK+DG  +T+ Y +G+   A  RGDG  G+D SA  R +P +P      +PE 
Sbjct: 120 ---LWIQPKVDGVAVTLVYRQGRLHQAISRGDGRHGQDWSARARQLPAVP----TRLPEA 172

Query: 185 IEV--RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFV 240
           +++  +GE+Y    D L   D          A  R   +G++ R  L+ TD    +  FV
Sbjct: 173 LDLVLQGELYWRLEDHLQARDGG--------AGARGKVAGMMARHELSDTDGA-AIGLFV 223

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI--------- 291
                          E L +++ LGF        A++ H    Y   ++S+         
Sbjct: 224 WDWPDGPASMD----ERLSQLQALGF--------ADSQH----YSKPIRSVEEARQWRQH 267

Query: 292 --RSTLPYDIDGLVYKVDEFSLQKQLGER--ARSPRWMISHKFAEKQASTRLLDIDIQIG 347
             R  LP+  DG+V +       +  G R  A +P W ++ K+   QA   +  +D +IG
Sbjct: 268 WYRHRLPFASDGVVLRQGT----RPAGARWQAEAPHWAVAWKYPASQALAVVQAVDFRIG 323

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           R+G +TPV RL+PV++    I+   L +    K L           D+R GD+V ++ AG
Sbjct: 324 RSGRITPVLRLQPVDLDDRRISRVALGSVPTWKSL-----------DVRPGDQVAIRLAG 372

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
             IP++  +I   R P   P                   P++    A        +C  Q
Sbjct: 373 LTIPRLDSVIW--RSPHRAPVEV----------------PRSADYHALSCWRSSPSCQHQ 414

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
              RL    S+    + G+G             +  ++   D   L + Q      ++++
Sbjct: 415 FQARLAWLSSKQGLALSGVGPGTWS--------SLPLQGLLDWLELDKAQ------LQSL 460

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            G G      L  +  + R+  L++++ +LG            A           +  ++
Sbjct: 461 PGIGPRRAAQLQQAFAQARDRPLQQWLRALG------------APPGFDAGGL-DDWPSL 507

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           I    DDWL   R P VG   A  ++ F+ +P
Sbjct: 508 IERQRDDWL---RRPGVGPKGADRLLAFFSHP 536


>gi|261823684|ref|YP_003261790.1| NAD-dependent DNA ligase LigB [Pectobacterium wasabiae WPP163]
 gi|261607697|gb|ACX90183.1| DNA ligase (NAD(+)) [Pectobacterium wasabiae WPP163]
          Length = 563

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 127/550 (23%), Positives = 220/550 (40%), Gaps = 89/550 (16%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           ++ KE+++L Q++   DD YY   K  + D  YD L+ + +     F           P 
Sbjct: 34  RSNKEITALRQQLERWDDVYYTEGKSPVEDDVYDQLREQLNQWLSCFQ----------PQ 83

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           N I   +  +  K  H +    L+K+ +   L ++I +    W           ++PK+D
Sbjct: 84  NAIPVRLPDN-GKQRHPVAHTGLKKVSDRGRLVQWIAQREGLW-----------IQPKVD 131

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  IT+ Y+ GK V A  RG+G  GED +  +R IP IP +L+   P  + ++GE+++  
Sbjct: 132 GVAITLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLT-GAPSSLVLQGELFLKM 190

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
            D        +        N R+  +G +RR  P+ +   ++ FV           K   
Sbjct: 191 TDHRQYTQGGV--------NARSVVAGEMRRHQPSPVLSQISLFVWEWPDGP----KAMP 238

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK----SIRSTLPYDIDGLVYKVDEFSL 311
           E L+K++ +GF +  G       H I S+ +  K       S LP+  DG+V +  +   
Sbjct: 239 ERLEKLKEMGFAMTAGYT-----HAIESFADAEKWRHYWHHSPLPFVTDGVVIRQTKEPQ 293

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            +    R  S  W I+ K+        + D+   +GRTG +  V +L P+ +   L++  
Sbjct: 294 GRYW--RNTSADWAIAWKYPPVHQVAEVTDVAFSVGRTGKIAVVLKLNPMKLDDKLVSRV 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQPFS 429
            + +    K             D++ GDRV V  AG+ IP++  +     ER        
Sbjct: 352 NVGSLSRWKQW-----------DVQPGDRVSVSLAGQGIPRLDSVAWRGAER-------- 392

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+  P           P      A         C  Q L RL         N+ G+ + 
Sbjct: 393 -PALVP-----------PNEHDFHAFSCFRYSAVCQQQFLARLVWLSGEHGLNLAGM-RD 439

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +       D      +  D+         +  ++  + G GD    ++Y S+   R + 
Sbjct: 440 GMWLRLMQHD------LLGDVLAW---LSLTEAQLNAVNGMGDKRARDIYTSLQSTRQVP 490

Query: 550 LERFIFSLGI 559
           L R++ +LGI
Sbjct: 491 LSRWLLALGI 500


>gi|317968248|ref|ZP_07969638.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0205]
          Length = 239

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 118/230 (51%), Gaps = 7/230 (3%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QAR   S L   ++     YY    P++ D  YD L R    + +A   L  ++ P    
Sbjct: 9   QARA--SELRDLLNRAAHAYYVLDAPVMEDPVYDRLYRELLDLENADASLISADSPT--- 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG        V H I  LSL+  +N ++L  +  R+ +   ++   ++    E KID
Sbjct: 64  QRVGGAPAAGFSSVRHRIGLLSLDNAFNTDELEAWYGRLLKVLDREAGTALPMVGELKID 123

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           G  + + YE G  V AA RGDG  GE+++A +R I ++P  L L N P  +EVRGE  I 
Sbjct: 124 GNALALSYENGVLVRAATRGDGEQGEEITANVRTIASVPLRLQLENPPAWLEVRGEALIP 183

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243
              F A+N E  A G   +ANPRNA +G LR+L+P  +  R L+FF + L
Sbjct: 184 DGTFAAINSERQARGEALFANPRNACAGTLRQLDPKVVAARKLDFFAYTL 233


>gi|330501400|ref|YP_004378269.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01]
 gi|328915686|gb|AEB56517.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01]
          Length = 564

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 131/557 (23%), Positives = 224/557 (40%), Gaps = 88/557 (15%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +A  EL +L ++I+  DD Y+     ++ D  YD  + R  A    FP    
Sbjct: 19  PCPNWADARAAMELGALSRQIAEWDDAYHNQGHSLVADEIYDQARGRLQAWHQCFPTA-- 76

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
                  L+ +   +  S  K+ H +    L K+ N   + ++I      W         
Sbjct: 77  -------LDNLPEPLAGSTGKLAHPVAQTGLRKL-NDAAVAEWIASRSDLW--------- 119

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE- 186
             ++PK+DG  +T+ Y  G   +A  RGDG  G+D +A  R +P +P      +PE ++ 
Sbjct: 120 --IQPKVDGVAVTLVYRHGVLQHAVSRGDGRHGQDWTARARQLPGVP----TRLPEPLDA 173

Query: 187 -VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGL 243
            ++GE+Y   N+ +   D          A  R   +G++ R  L+  +    +  FV   
Sbjct: 174 VLQGELYWRLNEHVQSRDGG--------AGARGKVAGLMARQTLDQHEAD-AIGLFVWDW 224

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               E       E LQ +  LGF  +    QA       S + + +      P+  DG+V
Sbjct: 225 PDGPEQMP----ERLQALHRLGFSDSLQYTQALRSPDQASLWRQ-RWFDQPQPFASDGVV 279

Query: 304 YKVDEFSLQKQLGER--ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
            +       +  GER  A +P W I+ K+   QA   +  +   IGRTG +TP+  L+PV
Sbjct: 280 LRQGT----RPSGERWQAEAPHWAIAWKYPASQALAVVQAVHFSIGRTGRITPILHLQPV 335

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           ++    I+   L +    + L           DIR GD+V ++ AG  IP++  +I   R
Sbjct: 336 DLDERRISRVALGSLQSWEKL-----------DIRPGDQVSIRLAGLTIPRLDQVIW--R 382

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P+                VV   +P     ++  R +    C  Q L RL     +   
Sbjct: 383 SPE--------------RAVVHAPDPDQYHALSCWRLSA--ECRQQFLARLNWLAGKQGL 426

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           N+ GLG         SE           +  L    +  + +++ + G G    + L  S
Sbjct: 427 NLNGLGPGTWSTLLASE----------QLDGLLDWLEFDSQRLQQLPGIGPRRASQLQQS 476

Query: 542 INKRRNISLERFIFSLG 558
             + +  SL++++ +LG
Sbjct: 477 FAQAQQRSLQQWLQALG 493


>gi|310765950|gb|ADP10900.1| NAD-dependent DNA ligase LigB [Erwinia sp. Ejp617]
          Length = 560

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 143/610 (23%), Positives = 245/610 (40%), Gaps = 103/610 (16%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +A  E+S+LE ++   DD YY+  +  I D  YD L  +       F   + + D  
Sbjct: 23  SASRADAEISALEAQLKKWDDAYYRRGESQIPDERYDTLHGKLQQWQRCF---SPASDLR 79

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            PL K  G       KV H +    ++K+      +  + R    W +K D      ++P
Sbjct: 80  QPLLKTDG-------KVLHPVSHTGVKKL----SDKAAVAR----WMEKRDG---LWIQP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ Y  G+ V    RGDG  GED +A  R IP IP+ +    P +   +GE+Y
Sbjct: 122 KVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPAIPKSIP-RFPAVQVFQGELY 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   D     D     G K   + R+  +G L    P+ + + +  FV          A 
Sbjct: 181 LKMTDHQQATD-----GGK---SARSIVAGALMAKAPSTMLQRVGIFVWAWPDGPNSIA- 231

Query: 253 GQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              + L  +R LGFP ++N   +      +  +    +     LP+  DG+V  V     
Sbjct: 232 ---QRLTGIRALGFPDISNWTHRVENVDEVEGWRE--RWFHQALPFATDGIV--VHSIPT 284

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++          W I+ K+   + ++ +  ++  IGRTG +  V  L PV +    ++  
Sbjct: 285 RQGTDWLPELGDWAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRV 344

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER----HPDA 425
            + + ++ K             D+  GD V +  AG  +P++  +I  V ER     PDA
Sbjct: 345 NIGSIEHWKQT-----------DVIAGDLVSISLAGLGVPRMDKVIWRVKERVLPPLPDA 393

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F+                       ++  R T    C  Q L RL+   S+   N+ G
Sbjct: 394 THFNS----------------------LSCFRLTA--QCRQQFLARLEWLSSKPVLNLSG 429

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
            G+Q      +    A S+   A IF+       S  +++ + G G+      +      
Sbjct: 430 AGRQTWQQLIQ----AGSM---AHIFSW---LALSEEQLKAVPGIGEQRAHFFWQQFRLS 479

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R +  +R++ +LG+           A   L+  N+ Q    +++H+  DW  L   P VG
Sbjct: 480 RQLPFKRWVKALGVP------IPERAMNTLTDDNWQQ----LLSHSLQDWQQL---PGVG 526

Query: 606 DIIAQAIVEF 615
             +A+ I  +
Sbjct: 527 QTLARKIFSY 536


>gi|77461491|ref|YP_350998.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens Pf0-1]
 gi|123772014|sp|Q3K5E7|LIGB_PSEPF RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|77385494|gb|ABA77007.1| putative exported DNA-ligase protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 558

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 154/629 (24%), Positives = 255/629 (40%), Gaps = 119/629 (18%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +  +A  E+ +L+Q+I   DD Y++  + +I D  YD  + R +     F        P 
Sbjct: 28  AAARASSEVVALQQQIDRWDDAYHREGRSVIADELYDQSRLRLNQWRQCF----NLPSPP 83

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            PL    G        V H +    L+K+ +  D+  ++         +D  +++  ++P
Sbjct: 84  EPLRTASG-------PVAHPVAHTGLDKLHDAADIATWL---------RDRQNVW--VQP 125

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ Y  G+   A  RGDG  G+D +A  + I  IP+   L  P+ + V+GE+Y
Sbjct: 126 KVDGVAVTLIYRDGRLHQAISRGDGVRGQDWTASAKKIGAIPQ--QLTQPQDLLVQGELY 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
                   LN  M A  R   AN R   +G+L R    D+         G+G     +  
Sbjct: 184 WR------LNGHMQA--RAGSANARATVAGLLGR---KDLGAE---HAAGIGLFVWDWPH 229

Query: 253 GQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
           G  ++ +++  L   GFP      QA      V+  N+ +  R     S LP+  DG+V 
Sbjct: 230 GPRDLPERITALTQFGFPTTVPYTQA------VASLNDAQHWRDHWYHSPLPFATDGVVL 283

Query: 305 KVDEFSLQKQLGER--ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           +    SL+    ER  AR P W ++ K+   QA   +  +  +IGRTG +TPV  L PV 
Sbjct: 284 RQ---SLRPP-AERWQARPPYWAVAWKYPFAQALADVRKVHFKIGRTGRITPVLELSPVM 339

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +           ++  IK +  S        DIR GD+V +  AG  IP++  +++    
Sbjct: 340 L-----------DDRQIKRVSVSSLRRWQELDIRPGDQVAISLAGLTIPRLDSVVL---- 384

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC---TGGLACSAQQLERLKHFVSRD 479
                          +S    DLN        A  C   T G  C +Q L RL     + 
Sbjct: 385 ---------------RSTERADLNVPLASDFHALSCWQPTPG--CESQFLARLTWLSGKQ 427

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
              +  +G+   +   ++      +    D  TL         ++ NI G G+ S   L 
Sbjct: 428 GLALPHVGRGTWEKLLETG----RLNSLLDWLTL------DGPELANIAGLGERSSARLL 477

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            S +  R     +++ +LG+   G       A    S+Q  AQ        N + W +  
Sbjct: 478 HSFHSARQRPFAQWLKALGLPPTGQ------ATLADSWQALAQR-------NTEQWQAEA 524

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
               +G   A  +  F+++P+ +   E L
Sbjct: 525 G---IGPGRAAQLSAFFRDPQVLTLSETL 550


>gi|313500944|gb|ADR62310.1| LigB [Pseudomonas putida BIRD-1]
          Length = 566

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 133/606 (21%), Positives = 255/606 (42%), Gaps = 101/606 (16%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA  E++ L   ++  D+ Y++    ++ D  YD  + R + +   F   A    P+ P
Sbjct: 29  QQAEAEVAQLRATLARWDEHYHRQGIALVADELYDQSRERLNHLQQCF---AVGTSPS-P 84

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           L    G        V H +P   ++K+ + + + +++      W           ++PK+
Sbjct: 85  LASARG-------PVPHPVPHTGVDKLADRQAVARWMAGKTGVW-----------VQPKV 126

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEVY 192
           DG  +++ Y++G+ V    RGDG  G D S  ++ +  + R     +PE +++  +GE+Y
Sbjct: 127 DGVAVSLTYQQGRLVQLTSRGDGVHGHDWSRHVKQLGAVTR----QLPEAVDLHLQGELY 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                 L LND + A  +   AN R   +G+L R   T +    +  FV G     E   
Sbjct: 183 ------LRLNDHVQA--KAGSANARGTVAGLLARKQLTGEQGNAIGLFVWGWPHGPEQ-- 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E L ++  LGFP +     A       +++ E    RS LP+  DG++ +      
Sbjct: 233 --QAERLAQLARLGFPDSQLYSIAIDTLEDAAHWRE-HWYRSALPFATDGVILRQGSRPP 289

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            ++   +A++P W+ + K+   QA   + D+  ++GRTG +TPV  ++PV +    IT  
Sbjct: 290 AERW--QAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQV 347

Query: 372 TLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           +L            G + R  R DIR GD+V +  AG  IP++  ++   R  + QP + 
Sbjct: 348 SL------------GSLARWQRLDIRPGDQVAISLAGLTIPRLEHVV--HRAVERQPITA 393

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+              P      +  R + G  C  Q + RL     +    +   G   
Sbjct: 394 PA--------------PDQHHAHSCWRASEG--CDEQFIARLTWLGGKQGLALPRTGPGT 437

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                ++            + ++    Q    +++   G   ++  +L  S ++ R+  +
Sbjct: 438 WRRLVEA----------GLVTSMTDWLQLDAERLQQAPGISRLTAAHLMGSFDEARSRPV 487

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++++ +LG+      I + L            +   + + N + W +   VP +G   + 
Sbjct: 488 DQWLRALGV-----PIGKHLP--------LTGDWQALASRNAEQWQT---VPGIGAKRSH 531

Query: 611 AIVEFY 616
            +VEF+
Sbjct: 532 QLVEFF 537


>gi|259906726|ref|YP_002647082.1| NAD-dependent DNA ligase LigB [Erwinia pyrifoliae Ep1/96]
 gi|224962348|emb|CAX53803.1| NAD-dependent DNA ligase [Erwinia pyrifoliae Ep1/96]
 gi|283476511|emb|CAY72326.1| putative NAD-dependent DNA ligase [Erwinia pyrifoliae DSM 12163]
          Length = 560

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 144/611 (23%), Positives = 244/611 (39%), Gaps = 105/611 (17%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +A  E+S+LE ++   DD YY+  +  I D  YD L  +       F   + + D  
Sbjct: 23  SASRADAEISALEAQLKKWDDAYYRRGESQIPDERYDTLHGKLQQWQRCF---SPASDLR 79

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            PL K  G       KV H +    ++K+      +  + R    W +K D      ++P
Sbjct: 80  QPLLKTDG-------KVLHPVSHTGVKKL----SDKAAVAR----WMEKRDG---LWIQP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ Y  G+ V    RGDG  GED +A  R IP IP+ +    P +   +GE+Y
Sbjct: 122 KVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPAIPKSIP-RFPAVQVFQGELY 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   D     D     G K   + R+  +G L    P+ + + +  FV          A 
Sbjct: 181 LKMTDHQQATD-----GGK---SARSIVAGALMAKAPSTMLQRVGIFVWAWPDGPNSIA- 231

Query: 253 GQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              + L  +R LGFP ++N   +      +  +    +     LP+  DG+V  V     
Sbjct: 232 ---QRLTGIRALGFPDISNWTHRVENVDEVEGWRE--RWFHQALPFATDGIV--VHSIPT 284

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++          W I+ K+   + ++ +  ++  IGRTG +  V  L PV +    ++  
Sbjct: 285 RQGTDWLPELGDWAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRV 344

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER----HPDA 425
            + + ++ K             D+  GD V +  AG  +P++  +I  V ER     PDA
Sbjct: 345 NIGSIEHWKQT-----------DVIAGDLVSISLAGLGVPRMDKVIWRVKERVLPPLPDA 393

Query: 426 QPF-SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             F S   F           L P+               C  Q L RL+   S+   N+ 
Sbjct: 394 THFNSLSCF----------RLTPQ---------------CRQQFLARLEWLSSKPVLNLS 428

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G G+Q      +    A S+     IF+       S  +++ + G G+      +     
Sbjct: 429 GAGRQTWQQLIQ----AGSM---THIFSW---LALSEEQLKAVPGIGEQRAHFFWQQFRL 478

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R +  +R++ +LG+           A   L+  N+ Q    +++H+  DW  L   P V
Sbjct: 479 SRQLPFKRWVKALGVP------IPERAMNTLTDDNWQQ----LLSHSLQDWQQL---PGV 525

Query: 605 GDIIAQAIVEF 615
           G  +A+ I  +
Sbjct: 526 GQTLARKIFSY 536


>gi|254229733|ref|ZP_04923142.1| DNA ligase [Vibrio sp. Ex25]
 gi|151937778|gb|EDN56627.1| DNA ligase [Vibrio sp. Ex25]
          Length = 287

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 125/234 (53%), Gaps = 9/234 (3%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL   + P+  
Sbjct: 23  ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPS-- 80

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133
             ++GG+   +  +VTH +P LSL+  ++  +L  F  R     ++    S+  +  EPK
Sbjct: 81  -QRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---ERVGSQSVKEYCCEPK 136

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  N  P  +EVRGEV+
Sbjct: 137 LDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVF 196

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           + K  F  LN+     G K + N RNAA+G LR+L+     +R L+F+ +  G+
Sbjct: 197 MPKAGFEKLNELARKKGEKIFVNXRNAAAGSLRQLDSRITASRPLSFYAYSGGR 250


>gi|104783946|ref|YP_610444.1| NAD-dependent DNA ligase LigB [Pseudomonas entomophila L48]
 gi|123255217|sp|Q1I3X5|LIGB_PSEE4 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|95112933|emb|CAK17661.1| putative DNA ligase, NAD-dependent [Pseudomonas entomophila L48]
          Length = 557

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 126/560 (22%), Positives = 233/560 (41%), Gaps = 93/560 (16%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P      ++AR E+S L + +S+ DD Y++    ++ D  YD  ++    +   F DLA 
Sbjct: 22  PCPDWPAQRARAEVSQLLKTLSHWDDHYHRQGVALVADELYDQSRQHLRHLQGCF-DLAS 80

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           ++ P          +  +  +V H +P   ++K+ +   +++++      W         
Sbjct: 81  NDAP----------LATARGQVPHPVPHTGVDKLRDEPAVQRWLQGRQGMW--------- 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +++ Y++G+      RGDG  G D S   R IP + R++   +P+ ++ 
Sbjct: 122 --IQPKVDGVAVSLVYQQGQLTQLLSRGDGVLGHDWS---RHIPQLGRIVR-QLPQPLDT 175

Query: 188 --RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-----ITRYLNFFV 240
             +GE+Y    D +              AN R   +G+L R   +D     I  ++  + 
Sbjct: 176 VFQGELYWRLADHVQ--------AEAGSANARGIVAGLLARKQLSDEQGSGIGLFVWDWP 227

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
            G G         Q E L ++  LGF  +     A       +++ +    R+ LP+  D
Sbjct: 228 AGPGS--------QAERLAQLTALGFIDSQRFSVAIEGFDAAAHWRQ-HWYRTALPFATD 278

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G++ + D     ++   RA++P W+ + K+   QA  ++ DI  +IGRTG +TP+ +LEP
Sbjct: 279 GVILRQDARPPAQRW--RAQAPYWIAAWKYPFSQALAQVRDIHFRIGRTGRITPLLQLEP 336

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN 419
           + +    I+  +L            G + R  + DIR GD+V V  AG  IP+V  ++  
Sbjct: 337 IQLDDRRISQVSL------------GSLARWTQLDIRPGDQVAVSLAGLTIPRVESVVHR 384

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
                  P   P   P          +P    L++  + +   AC  Q L RL       
Sbjct: 385 S------PLRAPVLVP----------DPADHHLLSCWQASP--ACQEQFLARLAWLGGNK 426

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
             ++ G+G        +S            + TL    + +   +  + G        L 
Sbjct: 427 GLDMAGVGSGVWHQLVES----------GKVATLSDWLELTREDLLEVPGIAQARAERLL 476

Query: 540 DSINKRRNISLERFIFSLGI 559
            + +  R    ER++  LG+
Sbjct: 477 QAFSLGRRQPFERWLRGLGL 496


>gi|227327138|ref|ZP_03831162.1| NAD-dependent DNA ligase LigB [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 563

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 137/614 (22%), Positives = 248/614 (40%), Gaps = 117/614 (19%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSEDPNGP 74
           KE+ +L  ++   DD YY   K  I D  YD L+ + +     F    P   R  D NG 
Sbjct: 37  KEIDALRHQLEQWDDVYYTEGKSPIEDDVYDQLREQLNQWLGCFQPQNPIPVRLPD-NG- 94

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
                        K +H +    L+K+ +   L ++I +    W           ++PK+
Sbjct: 95  -------------KQSHPVAHTGLKKLSDRRQLMQWIAQREDLW-----------IQPKV 130

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+ Y+ GK V A  RG+G  GED +  +R IP IP +L+ + P  + ++GE+++ 
Sbjct: 131 DGVAVTLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLT-DAPSSLVLQGELFLK 189

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
                  N +    G     N R+  +G +RR  P+ +   +  FV       +      
Sbjct: 190 MT-----NHQQRTQGG---VNARSVVAGEMRRHQPSPVLSQIALFVWEWPDGPKTMP--- 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK----SIRSTLPYDIDGLVYKVDEFS 310
            E L+K++ +GF +      A+  H I S+ +  K         LP+  DG+V +  +  
Sbjct: 239 -ERLEKLKEMGFAMT-----ADYTHAIGSFADAEKWRHDWYHGPLPFVTDGVVIRQTKEP 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             +    R  S  W I+ K+        + D+   +GRTG +  V +L P+ +    ++ 
Sbjct: 293 QGRYW--RNTSADWAIAWKYPPVNQVAEVADVAFSVGRTGKIAVVLKLNPLKLDDKSVSR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDI---------IVNE 420
             +            G + R  + D+  GDRV V  AG+ IP++ ++         IV  
Sbjct: 351 VNV------------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVWRGTERPAIVFP 398

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
              D   FS   +  +CQ + +  L   +G     H            L  ++H +  D 
Sbjct: 399 SEHDFHAFSCFRYSAVCQQQFLARLVWLSGD----HGLKLAGVREGMWLRLIQHDLLEDV 454

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +   L + QL+                                  + G GD    ++YD
Sbjct: 455 LSWLSLTEAQLN---------------------------------AVNGMGDKRARDIYD 481

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA----QEINNIIAHNNDDWL 596
           S+   R + L R++F+LGI    + I+      +L+ Q +     ++ + I     ++ +
Sbjct: 482 SLQSARQMPLSRWLFALGIPVPRSAISALDDVDWLALQQWTAQQWRQFSGIGERRAEEIM 541

Query: 597 SLIRVPLVGDIIAQ 610
           + ++ P+V ++I +
Sbjct: 542 AFLKHPIVVELITR 555


>gi|312170612|emb|CBX78875.1| putative NAD-dependent DNA ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 554

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 144/616 (23%), Positives = 245/616 (39%), Gaps = 107/616 (17%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +A  E+++L+ ++   D+ YY+  +  + D  YD L  +       F   + + D 
Sbjct: 22  WSPSRADAEIAALKAQLEKWDEAYYRRGEAQVPDERYDTLHDKLQQWQRCF---SPASDL 78

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             PL K  G       KV H +    ++K       +  + R    W +K D      ++
Sbjct: 79  RQPLLKTDG-------KVLHPVSHTGVKK----ASGKAAVAR----WMEKRDG---LWIQ 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +T+ Y  G+ V    RGDG  GED +A  R IP IP+ +    P +   +GE+
Sbjct: 121 PKVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPDIPKSIP-RFPAMQVFQGEL 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+   D    ND     G K   + R+  +G L     + + + +  FV          A
Sbjct: 180 YLKMTDHQQAND-----GGK---SARSLVAGALMAKAASTVLQRVGIFVWAWPDGPNSIA 231

Query: 252 KGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL-VYKVDEF 309
           K     L  +R LGFP + +   +      +  +    +     LP+  DG+ V+ +   
Sbjct: 232 K----RLTGIRALGFPDIKDWTHRVENVDEVEGWRE--RWFHQRLPFATDGIVVHGMPTR 285

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
                L ER     W I+ K+   + ++ +  ++  IGRTG +  V  L PV +    ++
Sbjct: 286 QGTDWLPERG---DWAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVS 342

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER----HP 423
              + + ++ K             D+  GD+V +  AG  +P++  +I  V ER     P
Sbjct: 343 RVNIGSIEHWKQT-----------DVIAGDQVSISLAGMGVPRMDKVIWRVKERVLPPLP 391

Query: 424 DAQPF-SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           DA  F S   F           L PK               C  Q L RL+   S+   N
Sbjct: 392 DATHFNSLSCF----------HLTPK---------------CRQQFLARLEWLSSKPVLN 426

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           + G G+Q      +S   A        IF+       S  +++ + G G+      +   
Sbjct: 427 LSGAGRQTWQQLMQSGSMAH-------IFSW---LALSEEELKAVPGIGEQRAHFFWHQF 476

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              R +  +R++ +LG+           A   L+  N+ Q    +++H+  DW  L   P
Sbjct: 477 RLSRQLPFKRWVKALGVP------IPERAMNTLTDDNWQQ----LLSHSLQDWQQL---P 523

Query: 603 LVGDIIAQAIVEFYQN 618
            VG  +A+ I  + Q 
Sbjct: 524 GVGQTLARKIFSYLQQ 539


>gi|227113300|ref|ZP_03826956.1| NAD-dependent DNA ligase LigB [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 563

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 140/619 (22%), Positives = 251/619 (40%), Gaps = 126/619 (20%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+ +L  ++   DD YY   K  I D  YD L+ + +     F           P N I
Sbjct: 37  KEIDALRHQLELWDDVYYTEGKSPIEDDVYDQLRDQLNQWLGCF----------QPKNAI 86

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
              +  +  K  H +    L+K+    D R+ +  I      ++D      ++PK+DG  
Sbjct: 87  PARLPDN-GKQLHPVAHTGLKKL---SDRRQLVQWI----APRED----LWIQPKVDGVA 134

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +T+ Y+ GK V A  RG+G  GED +  +R IP IP +L+ + P  + ++GE+      F
Sbjct: 135 VTLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLT-DAPSSLVLQGEL------F 187

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
           L + D    +  +   N R+  +G +RR  P+ +   +  FV       +       E L
Sbjct: 188 LKMTDHRQRI--QGSVNARSVVAGEMRRHQPSPVLSQIGLFVWEWPDGPKTMP----ERL 241

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMK----SIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +K++ +GF +      A+  H I S+ +  K       S LP+  DG+V +      ++ 
Sbjct: 242 EKLKEMGFAMT-----ADYTHAIGSFADAEKWRHHWYHSPLPFVTDGVVIR----QTKEP 292

Query: 315 LGERARS--PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            G   R+    W I+ K+        ++D+   +GRTG +  V +L P+ +         
Sbjct: 293 QGRYWRNTLADWAIAWKYPPVHQVAEVVDVAFSVGRTGKVAVVLKLNPLKL--------- 343

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV--NERHPDAQP--F 428
             ++  ++ ++          D+  GDRV V  AG+ IP++ +++    ER     P   
Sbjct: 344 --DDKSVRRVNVGSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVWRSTERPAIVSPNEH 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            F +F     S                      +AC  Q L RL         N+ G+ +
Sbjct: 402 DFHAFSCFRYS----------------------VACQQQFLARLVWLSGEHGLNLAGVRE 439

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                  + +       +  D+ +       +  ++  + G GD    ++Y S+   RN+
Sbjct: 440 GMWQRLIQHD-------VLEDVLSW---LSLTEAQLNAVNGMGDKRARDIYTSLQSARNM 489

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI--------R 600
            L R++ +LGI      + RS +                 A +N  WL+L         +
Sbjct: 490 PLSRWLLALGI-----PVPRSASS----------------ALDNVGWLALQQWTAQQWRQ 528

Query: 601 VPLVGDIIAQAIVEFYQNP 619
            P +G+  A+ I+ F ++P
Sbjct: 529 FPGIGEGRAEEIMAFLKHP 547


>gi|330812312|ref|YP_004356774.1| DNA ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380420|gb|AEA71770.1| putative exported DNA-ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 557

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 133/562 (23%), Positives = 228/562 (40%), Gaps = 89/562 (15%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P      E+AR E+++L+Q+I   DD Y++  +  + D  YD  + +       F +LA 
Sbjct: 22  PCPDWPTERARAEIAALQQQIDTWDDGYHRLGQSPVADELYDQSRAQLGQWRRCF-NLAA 80

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            +DP       GG       KV H +    LEK+ + + +  ++      W         
Sbjct: 81  PDDPP---RSTGG-------KVPHPVVHTGLEKLKDADAVGAWLRGREDVWA-------- 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
              +PK+DG  +T+ Y KG+   A  RGDG  G D +   R I  IP+ L  ++  +++ 
Sbjct: 123 ---QPKVDGVAVTLVYRKGRLHQAISRGDGVQGHDWTTNARKIGAIPQRLHQSVDLVVQ- 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
            GE+Y      +  +   +        N R   +G++ R N T     Y++ FV    + 
Sbjct: 179 -GELYWRLEAHVQASSGSV--------NARGTMAGLMARSNLTVHDGVYIDLFVWDWPEG 229

Query: 247 SEIFAKGQYEMLQKMRCLGFP----VNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +       E +  +  LGF      N  VR  A+       +Y      R+ LP+  DG
Sbjct: 230 PDTLP----ERMAALNALGFADTLDYNQPVRTLADAEQWRDHWY------RTPLPFASDG 279

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V          +   +AR+P W ++ K+   QA   +  +  ++GRTG +TPV  LE +
Sbjct: 280 IVLHQSRRPPADRW--QARAPFWSVAWKYPYAQALAEVRKVHFKVGRTGRITPVLELERI 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +           ++ +I+ +  S        DIR GDRV +  AG  IP++  +++  R
Sbjct: 338 RL-----------DDRWIRRVSVSSLKRWEEMDIRPGDRVAISLAGLTIPRLDSVVL--R 384

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             + Q  + P+         +    P  G             C +Q L RL     +   
Sbjct: 385 SVERQNLNVPA---ETDHHFLSCWQPTPG-------------CESQFLARLGWLSGKQGL 428

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
            +  +G    +        A  +    D  TL         ++ NI GFG+ S T L  S
Sbjct: 429 ALPHVGPGTWEKLLA----AGRLDGLLDWMTL------DAAELANIAGFGEHSSTRLLAS 478

Query: 542 INKRRNISLERFIFSLGIRHVG 563
           ++  R    E+++ +LG+   G
Sbjct: 479 LHSARQRPFEQWLKALGLPPAG 500


>gi|292486544|ref|YP_003529410.1| putative NAD-dependent DNA ligase [Erwinia amylovora CFBP1430]
 gi|292897779|ref|YP_003537148.1| DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291197627|emb|CBJ44721.1| putative DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291551957|emb|CBA18994.1| putative NAD-dependent DNA ligase [Erwinia amylovora CFBP1430]
          Length = 554

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 142/615 (23%), Positives = 243/615 (39%), Gaps = 105/615 (17%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +A  E+++L+ ++   D+ YY+  +  + D  YD L  +       F   + + D 
Sbjct: 22  WSPSRADAEIAALKAQLEKWDEAYYRRGEAQVPDERYDTLHDKLQQWQRCF---SPASDL 78

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             PL K  G       KV H +    ++K       +  + R    W +K D      ++
Sbjct: 79  RQPLLKTDG-------KVLHPVSHTGVKK----ASGKAAVAR----WMEKRDG---LWIQ 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +T+ Y  G+ V    RGDG  GED +A  R IP IP+ +    P +   +GE+
Sbjct: 121 PKVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPDIPKSIP-RFPAMQVFQGEL 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+   D    ND     G K   + R+  +G L     + + + +  FV          A
Sbjct: 180 YLKMTDHQQAND-----GGK---SARSLVAGALMAKAASTVLQRVGIFVWAWPDGPNSIA 231

Query: 252 KGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           K     L  +R LGFP + +   +      +  +    +     LP+  DG+V  V    
Sbjct: 232 K----RLTGIRALGFPDIKDWTHRVENVDEVEGWRE--RWFHQRLPFATDGIV--VHGMP 283

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++          W I+ K+   + ++ +  ++  IGRTG +  V  L PV +    ++ 
Sbjct: 284 TRQGTDWLPEQGDWAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSR 343

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER----HPD 424
             + + ++ K             D+  GD+V +  AG  +P++  +I  V ER     PD
Sbjct: 344 VNIGSIEHWKQT-----------DVIAGDQVSISLAGMGVPRMDKVIWRVKERVLPPLPD 392

Query: 425 AQPF-SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           A  F S   F           L PK               C  Q L RL+   S+   N+
Sbjct: 393 ATHFNSLSCF----------HLTPK---------------CRQQFLARLEWLSSKPVLNL 427

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G G+Q      +S   A        IF+       S  +++ + G G+      +    
Sbjct: 428 SGAGRQTWQQLMQSGSMAH-------IFSW---LALSEEELKAVPGIGEQRAHFFWQQFR 477

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R +  +R++ +LG+           A   L+  N+ Q    +++H+  DW  L   P 
Sbjct: 478 LSRQLPFKRWVKALGVP------IPERAMNTLTDDNWQQ----LLSHSLQDWQQL---PG 524

Query: 604 VGDIIAQAIVEFYQN 618
           VG  +A+ I  + Q 
Sbjct: 525 VGQTLARKIFSYLQQ 539


>gi|312963566|ref|ZP_07778047.1| DNA ligase B [Pseudomonas fluorescens WH6]
 gi|311282075|gb|EFQ60675.1| DNA ligase B [Pseudomonas fluorescens WH6]
          Length = 553

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 140/632 (22%), Positives = 261/632 (41%), Gaps = 108/632 (17%)

Query: 7   IPIEALS---IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           +P+ +L+    E AR ++  L +++   DD Y++  +  + D  YD  ++R   +A   P
Sbjct: 12  VPLWSLAQNCPEDARTQIHELAEQVRLWDDSYHRLGQSPVSDELYDQARQR---LADWRP 68

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
             A+      P    G  +  S   + H +    LEK+ + + +  ++      W     
Sbjct: 69  CAAQ------PATVPGNPLTTSRGTLPHPVAHTGLEKLRDEQAVGTWLDTHKEVW----- 117

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
                 ++PK+DG  +T+ Y +G+      RGDG  G+D SA  R IP I  V  L  P 
Sbjct: 118 ------IQPKVDGVAVTLMYRQGRLSRVISRGDGTLGQDWSASARKIPGI--VQQLPEPL 169

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL--RRLNPTDITRYLNFFVH 241
            + ++GE+Y   +  +      +        N R+  +G++  R+L+ TD    +  FV 
Sbjct: 170 DLVLQGELYWRLHAHVQSASGGL--------NARSKVAGLMNRRQLSDTDAAG-IGLFVW 220

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ-----ANTFHGIVSYYNEMKSIRSTLP 296
              +    F     E L  +  LGF  +    Q      +  H    +YN        LP
Sbjct: 221 AWPEGPTGFT----ERLATLARLGFVDSQRYSQPVQDLTDAMHWRAYWYNH------PLP 270

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           +  DG+V    + +  ++   +A +P W ++ K+   +A   +  +  ++GRTG +TP+ 
Sbjct: 271 FASDGVVLHQAQHAPAQRW--QANAPYWAVAWKYPATKALALVRKVHFKVGRTGRITPIL 328

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            L+PV++    I+  +  +    + L           DIR GD+V +  AG+VIP++ ++
Sbjct: 329 ELQPVHLDDRQISRVSAGSLKRWQAL-----------DIRPGDQVSISLAGQVIPRLDEV 377

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           I+     +A     P   P          +P+    ++  +   G  C  Q L RL    
Sbjct: 378 ILR----NATRVDLP--VP----------DPRNFHALSCWQLDPG--CEEQLLARLSWLS 419

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
                 +  +G++  +   ++   A  +    D  TL         ++ NI G GD+S  
Sbjct: 420 GNQGLALPHMGRETWNVLIQAGLIAGFL----DWLTL------DAAELANIDGLGDLSRA 469

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            + DSI   R     +++ +LG+       AR+         N   +   +IA +   W 
Sbjct: 470 RVLDSIRSARQRPFAQWLKALGV----PPAARN---------NLEGDWQTLIARDTQAWQ 516

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           +   +  +G   A  +  F+++P+     E L
Sbjct: 517 A---IDGIGPGRAAQLSAFFRDPQIQALAETL 545


>gi|330722383|gb|EGH00233.1| DNA ligase [gamma proteobacterium IMCC2047]
          Length = 258

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 114/204 (55%), Gaps = 9/204 (4%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E+ +L  +++ H+  YY   +P I D EYD L R+   I    P+L   + P     +
Sbjct: 7   RQEVEALRAQLNQHNYRYYVLDEPSIPDVEYDRLLRQLQTIEAQHPELISQDSPT---QR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G +   +  +VTH +  LSL+  +N +++R F  RI    + KD + + F  EPK+DG 
Sbjct: 64  VGAQPLTAFGEVTHDMRMLSLDNAFNDDEMRDFERRIKD--RLKDTSELEFVCEPKLDGI 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ YE G FV  A RGDG +GE+++  +R +P+IP  ++    PE +EVRGEVY+ K 
Sbjct: 122 AVSLLYENGIFVRGATRGDGQTGENITQNLRTVPSIPLTLMGTGWPERLEVRGEVYMPKA 181

Query: 197 DFLALNDEMIAVGRKPY---ANPR 217
            F A N + +   + P    A PR
Sbjct: 182 GFDAFNKQGLLTVKSPLLIRAMPR 205


>gi|330961969|gb|EGH62229.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 523

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 125/547 (22%), Positives = 229/547 (41%), Gaps = 86/547 (15%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           ++L+Q+I+  DD Y++    +I D  YD  +++  A    F   A S     PL    G 
Sbjct: 1   TALQQQIASWDDSYHRQGISLIPDELYDQARQKLSAWRTCF---AVSTPEANPLATATGP 57

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
           +        H IP   + K+ + +D++ ++      W           ++PK+DG  +T+
Sbjct: 58  L-------AHPIPHTGVNKLADEKDVKAWLKGRTDLW-----------IQPKVDGVAVTL 99

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            Y++G+ V A  RGDG  G+D +   R I  IPR L     E + ++GE+Y   ++ +  
Sbjct: 100 IYDEGRLVQAISRGDGVQGQDWTPQARLIKAIPRQLPRT--ESVILQGELYWRLDEHIQA 157

Query: 202 NDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
               +        N R+  +G+L R  + P      +  FV         +  G  +M Q
Sbjct: 158 TSGSV--------NARSKVAGLLARQTIKPQQ-ANAIGLFVWD-------WPNGPTDMAQ 201

Query: 260 K---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +   ++ +GF  + G       H   + + E    R+ LP+  DG++ +  +    ++  
Sbjct: 202 RLAGLQAMGFGDSVGYTHLLENHAQAAKWRE-HWYRNPLPFATDGVIMRQGQRPPAQRW- 259

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
            +A +P W+ + K    QA   + +++  +GR+G +TPV  L PV +   ++T  +  + 
Sbjct: 260 -QATAPYWIAAWKHPYAQALAEVRNVNFTVGRSGRITPVLELTPVRLDDRIVTRISAGSL 318

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
              + L           DIR GD+V V  AG  IP++  ++   R  +    S P     
Sbjct: 319 QRWQAL-----------DIRPGDQVAVSLAGLTIPRLDSVV--SRATERAEMSTPD---- 361

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                 RD +      ++  + T G  C +Q   RL     +    + G+G    D   +
Sbjct: 362 -----ARDFHE-----LSCWQATPG--CESQFRARLVWLSGKKGLALPGVGPGTWDRLIE 409

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +   A  +    D  TL         ++ NI GF + S   L  S+   R    + ++ +
Sbjct: 410 NGRIAGLL----DWMTLNH------AELANIPGFAERSSAKLLASLQTARERPFQVWLKA 459

Query: 557 LGIRHVG 563
           +G+   G
Sbjct: 460 IGLPPTG 466


>gi|188532209|ref|YP_001906006.1| NAD-dependent DNA ligase LigB [Erwinia tasmaniensis Et1/99]
 gi|188027251|emb|CAO95090.1| Putative NAD-dependent DNA ligase [Erwinia tasmaniensis Et1/99]
          Length = 561

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 145/616 (23%), Positives = 248/616 (40%), Gaps = 109/616 (17%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +A  E+S+L+ ++   DD YY+  +  I D +YD L  +       F   + + D  
Sbjct: 23  SASRADAEISALQAQLEKWDDAYYRRGESPIPDEQYDTLHGKLRQWQRCF---SPASDLR 79

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            PL K  G       KV H +  + ++K+ +   L +++ R    W           ++P
Sbjct: 80  KPLLKTDG-------KVLHPVSHMRVKKLPDKTALTRWMARRSGLW-----------VQP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV---RG 189
           KIDG  +++ Y  G+      RGDG  GED +   R IP IP+     IP  + V   +G
Sbjct: 122 KIDGVAVSLLYRDGQLEQMISRGDGVRGEDWTEKARLIPDIPKF----IPHSMRVQVFQG 177

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+Y+   D    + + I  G+    N R+A +G L    P  + + + FFV         
Sbjct: 178 ELYLKMTD----HRQAINGGK----NARSAVAGALMAKAPAPLLQQIGFFVWEWPDGPTS 229

Query: 250 FAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            A    + L + R LGFP ++    + +    + S+    +     LP+  DG+V  V  
Sbjct: 230 LA----QRLTETRSLGFPDISAWTHRVDNVDEVESWRE--RWFHQPLPFVTDGIV--VHS 281

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              ++          W+I+ K+A  +A+  +  ++  IGRTG +  V  L PV +G   I
Sbjct: 282 IPTRRGSDWLPEFGEWVIAWKYAPPEATAEVRSVEFAIGRTGRVNVVLNLLPVQLGDKRI 341

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER----H 422
           +  ++ + +  K             D+  GD+V +  AG   P++  ++  V ER     
Sbjct: 342 SRVSVGSIENWKQT-----------DVIAGDQVSISLAGLGAPRLDKVLWRVAERAYPPQ 390

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           PDA  F+         S     L P+               C  Q L RL+    +   N
Sbjct: 391 PDAAQFN---------SVSCFHLTPQ---------------CRQQFLARLEWLGGKSVLN 426

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           + G G+Q      +S            IF+       +  ++E + G G+      +   
Sbjct: 427 LVGTGRQTWQQLIQSGS-------MVHIFSW---LALTKEQLEAVPGIGEQRAQLFWQQF 476

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              R +  +R++ +LG+      I    A   L+  N+      +++    +W  L   P
Sbjct: 477 KLSRQLPFKRWVKALGV-----PIPEK-ALNTLTDDNW----QPLVSRRLQEWQQL---P 523

Query: 603 LVGDIIAQAIVEFYQN 618
            VG  +A  IV F Q 
Sbjct: 524 GVGRKLAGKIVSFLQQ 539


>gi|26991646|ref|NP_747071.1| NAD-dependent DNA ligase LigB [Pseudomonas putida KT2440]
 gi|81439525|sp|Q88D59|LIGB_PSEPK RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|24986741|gb|AAN70535.1|AE016695_9 DNA ligase, NAD-dependent, putative [Pseudomonas putida KT2440]
          Length = 566

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 139/624 (22%), Positives = 261/624 (41%), Gaps = 104/624 (16%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA+ E++ L   ++  D+ Y++    ++ D  YD    R + +   F   A    P+ P
Sbjct: 29  QQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSHERLNHLQQCF---AVGTSPS-P 84

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           L    G        V H +P   ++K+ + + + +++T     W           ++PK+
Sbjct: 85  LASARG-------PVPHPVPHTGVDKLADRQAVARWMTGKTGVW-----------VQPKV 126

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEVY 192
           DG  +++ Y++G+ V    RGDG  G D S   R IP +  V +  +PE +++  +GE+Y
Sbjct: 127 DGVAVSLTYQQGRLVQLTSRGDGVHGHDWS---RHIPQLGAV-TRQLPEAVDLHLQGELY 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
                 L L++ + A  +   AN R   +G+L R   T      +  FV G     E   
Sbjct: 183 ------LRLDEHVQA--KAGSANARGTVAGLLARKQLTGAQGNAIGLFVWGWPHGPEQ-- 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E L ++  LGFP +     A       +++ E    RS LP+  DG++ +      
Sbjct: 233 --QAERLAQLARLGFPDSQLYSIAIDTLEDAAHWRE-HWYRSALPFATDGVILRQGSRPP 289

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            ++   +A++P W+ + K+   QA   + D+  ++GRTG +TPV  ++PV +    IT  
Sbjct: 290 AERW--QAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQV 347

Query: 372 TLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           +L            G + R  R DIR GD+V +  AG  IP++  ++   R  + QP + 
Sbjct: 348 SL------------GSLARWQRLDIRPGDQVAISLAGLTIPRLEHVV--HRAVERQPITA 393

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           P+              P       AH C      C  Q + RL     +    +   G  
Sbjct: 394 PA--------------PDQHH---AHSCWQASEGCDEQFIARLTWLGGKQGLALPRTGPG 436

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                 ++            + ++    Q    +++   G   ++ T +  S ++ R+  
Sbjct: 437 TWRRLVEA----------GLVTSMTDWLQLDAERLQQAPGISRLTATQMLGSFDQARSRP 486

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ++++ +LG+          + K+     N+      + + +   W +   VP +G   +
Sbjct: 487 FDQWLRALGV---------PIGKHLPLTGNW----QALASRSAGQWQT---VPGIGAKRS 530

Query: 610 QAIVEFYQNPRNICAVEALLKEVS 633
           + +VEF+     + A+ A L E  
Sbjct: 531 RQLVEFFAA-SEVQAIAAQLAEAG 553


>gi|253690568|ref|YP_003019758.1| DNA ligase (NAD(+)) [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259494926|sp|C6DJC3|LIGB_PECCP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|251757146|gb|ACT15222.1| DNA ligase (NAD(+)) [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 562

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 137/617 (22%), Positives = 257/617 (41%), Gaps = 109/617 (17%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE+ +L Q++   DD YY   K  + D  YD L+ + +     F        P    
Sbjct: 33  RSKKEIDALRQQLEQWDDVYYTEGKSPVADDVYDQLREQLNQWLGCF-------QPQSVA 85

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +    +    L  V H+     L+K+ + E L ++I       Q++D       ++PKID
Sbjct: 86  SVRLPDHGKQLHPVAHT----GLKKLSDREQLVQWIA------QRED-----VWIQPKID 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y+ GK   A  RG+G  GED +  +R IP IP +L+ N+P ++ ++GE+++  
Sbjct: 131 GVAVTLVYQHGKLESAVSRGNGLQGEDWTEKVRLIPEIPHLLT-NVPSLLVLQGELFLKM 189

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
            D    + + I  G     N R+  +G +RR  P+ +   +  F+       +       
Sbjct: 190 TD----HRQHIQGG----VNARSVVAGEMRRHQPSPVLSQIGLFIWEWPDGPKTMP---- 237

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK----SIRSTLPYDIDGLVYKVDEFSL 311
           E L+K+  +GF +      A+  H I S+ +  K       + LP+  DG+V +  +   
Sbjct: 238 ERLEKLTEMGFAMT-----ADYTHAIGSFADAEKWHHYWYHNPLPFVTDGVVLRQTKEPQ 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            +    R  S  W I+ K+        ++D+   +GRTG L  V +L  + +    ++  
Sbjct: 293 GRYW--RNTSADWAIAWKYPPFHQVAEVIDVVFSVGRTGKLAVVLKLNLLKLDDKSVSRV 350

Query: 372 TLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIV--NERHPDAQP- 427
            +            G + R  + D+  GDRV V  AG+ IP++ +++    ER P   P 
Sbjct: 351 NV------------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVWRSTERLPIVSPS 398

Query: 428 ------FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                 FS   +  +CQ + +  L   +G+    H            L  ++H +  D  
Sbjct: 399 EHDFHAFSCFRYSTVCQQQFLARLVWLSGE----HGLNLTGVRDGMWLRLMQHGLLEDVL 454

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +   L + QL+                                  + G GD    ++Y S
Sbjct: 455 SWLSLTEAQLN---------------------------------AVTGMGDKRARDIYKS 481

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA----QEINNIIAHNNDDWLS 597
           +   R + L R++ +LG+    + I+      +L+ Q +     ++ + I     ++ ++
Sbjct: 482 LQSARQMPLSRWLLALGLPVPRSAISALNHVNWLALQQWTAQQWRQFSGIGERRAEEIMA 541

Query: 598 LIRVPLVGDIIAQAIVE 614
            ++ P V + IA+   E
Sbjct: 542 FLKHPAVVEFIARLDAE 558


>gi|92113642|ref|YP_573570.1| NAD-dependent DNA ligase LigB [Chromohalobacter salexigens DSM
           3043]
 gi|123387489|sp|Q1QXD7|LIGB_CHRSD RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|91796732|gb|ABE58871.1| DNA ligase (NAD+) [Chromohalobacter salexigens DSM 3043]
          Length = 629

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 139/611 (22%), Positives = 248/611 (40%), Gaps = 107/611 (17%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P   ++ E  + +  +L+  I+  D  YY+  + ++ D  YD+ KRR    A  FP LA+
Sbjct: 45  PCPQMTPEAMQNDYQALDARIARWDRAYYRQGQRLVDDGTYDSAKRRLAHWAECFPLLAK 104

Query: 68  ----SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
               + +P G  +              H +    + K+ + + +  ++ R       + D
Sbjct: 105 PSVNTHEPTGAKH--------------HPVAQTGIAKLPDRDAVAGWVAR-------QGD 143

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
           + ++  ++PK+DG  +T+ Y  G+   A  RGDG SG+D       I  IP  L  + P 
Sbjct: 144 HPLW--VQPKVDGVAVTLVYRHGRLAAAISRGDGVSGQDWYTKALHIAAIPSHLPADAPP 201

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
           ++ ++GE+Y  +       D             R   +G++ R   TD     +  FV  
Sbjct: 202 LVILQGELYARRTAHRQSRDGTDGA--------RARIAGLMARDTLTDREGSTIGLFVWA 253

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN----EMKSIRSTLPYD 298
                +       E L+ +   GF        A   HG+ +  +      +  R  LP+ 
Sbjct: 254 WPNGPDTMP----ERLETLAGWGF-----GDVAEMTHGVATAEDIAAWRQRWYRHALPFA 304

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DG+V K  +         +A  P W ++ K+  ++A  R+  ++  +GRTG +  VA L
Sbjct: 305 TDGVVVKRGDRPPGSDW--QASPPDWAMAWKYPAREALARVDALEFSVGRTGRIAVVAEL 362

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +G   +T  +L +  + +             D+R GD+V ++ AG  IP++ +++V
Sbjct: 363 EPVLLGDKRVTRVSLGSLAHWRRT-----------DVRPGDQVRLRLAGLTIPQLQEVVV 411

Query: 419 NER------HPDAQPF---SFPSFCPICQSRVVRDLN----------PKTGKLVAAHRCT 459
             R       P+A  +   S   F P C+ + +  L           P  G         
Sbjct: 412 RTRPRPQVDAPEADQYDRLSCLRFTPACRDQFLARLEWLGSDEGLDFPGIGPATWNQLVD 471

Query: 460 GGLACSAQQLERLKHFVSRDAFNIE---GLGKQQLDFF---FKSEDPAFSIR------IP 507
            GL      ++ L  + + D   +E   G+GK+    +   F   D   ++R      +P
Sbjct: 472 AGL------VKGLLDWRTLDTAALEALPGVGKKTARAWQRHFALADTRSAVRWLRALGVP 525

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNL--YDSINKRRNISLERFIFSLGIRHVGA- 564
           A    + R+  T   +   + G G ++  +   Y  I + R + L RF     IRH  A 
Sbjct: 526 A----VPRQALTDALERYGMAGLGTLAPPDWRDYSGIGETRAMQLTRFFRDTDIRHWLAS 581

Query: 565 -EIARSLAKYY 574
            E  R+L K +
Sbjct: 582 LESTRALQKQH 592


>gi|50119005|ref|YP_048172.1| NAD-dependent DNA ligase LigB [Pectobacterium atrosepticum
           SCRI1043]
 gi|81827264|sp|Q6DB58|LIGB_ERWCT RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|49609531|emb|CAG72964.1| putative DNA ligase [Pectobacterium atrosepticum SCRI1043]
          Length = 563

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 129/555 (23%), Positives = 224/555 (40%), Gaps = 99/555 (17%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A KE+ +L Q++   DD YY   K  I D  YD L+ + +  +  F           P 
Sbjct: 34  RASKEIDALRQQLEQWDDVYYTEGKSPIEDDVYDQLREQLNQWSQCF----------QPQ 83

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           N I   +  +  K  H +    L+K+ +   L ++I +    W           ++PK+D
Sbjct: 84  NVIPARLPDN-GKQPHPVAHTGLKKLSDRVQLVQWIVQREDLW-----------VQPKVD 131

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y+ GK V A  RG+G  GED +   R IP IP +LS   P    ++GE+++  
Sbjct: 132 GVAVTLVYQHGKLVSAVSRGNGLQGEDWTEKARLIPDIPHLLS-GAPSSFVLQGELFLKM 190

Query: 196 NDFLALNDEMIAVGRKPYA----NPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
            D             + YA    N R+  +G +RR  P+ +   +  FV           
Sbjct: 191 TD------------HRQYAQGGVNARSIVAGEMRRHQPSPVLSQIGLFVWEWPDGP---- 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK----SIRSTLPYDIDGLVYKVD 307
           K   E L K++ +GF +      A+  H I S+ +  K       S LP+  DG+V +  
Sbjct: 235 KAMPERLDKLKEMGFAMT-----ADYTHAIESFADVEKWRDHWYHSPLPFVTDGVVIRQT 289

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R  S  W I+ K+        ++D+   +GRTG +  V ++ P+ +    
Sbjct: 290 KEPQGRYW--RNTSADWAIAWKYPPVHQVAEVVDVAFSVGRTGKVAVVLKISPLKLDDKS 347

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIV--NERHPD 424
           ++   +            G + R  + D+  GDRV V  AG+ IP++ +++    ER   
Sbjct: 348 VSRVNV------------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVWRGTER--- 392

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                     P+        ++P      A       + C  Q L RL         N+ 
Sbjct: 393 ----------PVI-------VSPDEHNFHAFSCFRYSVVCQQQFLARLVWLSGEHGLNLA 435

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+ +  +       D      +  D+ +       +  ++  + G GD    ++Y S+  
Sbjct: 436 GM-RDGMWLRLMQHD------LLGDVLSW---LYLTEAQLNAVNGMGDKRARDIYMSLQS 485

Query: 545 RRNISLERFIFSLGI 559
            R  SL  ++ +LGI
Sbjct: 486 ARQKSLSHWLLALGI 500


>gi|257439787|ref|ZP_05615542.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
 gi|257197807|gb|EEU96091.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
          Length = 209

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 13/220 (5%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +EQARK    L   I  ++  YY    P + D EYDAL R   A+   FP L  +   
Sbjct: 1   MELEQARKRAEELRVIIERNNRLYYDQDAPELEDFEYDALTRELKALEAEFPQLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  K+GG  +    KVTH++   SL   ++ ++LR F  R+     + +     + +E
Sbjct: 58  NSPTQKVGGTPSGRFAKVTHAVKMESLLDAFSFDELRDFDRRVREAGIEPE-----YVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG   ++ YE G  V A+ RGDG  GEDV+A ++AI  IP+ L  N PE +EVRGEV
Sbjct: 113 IKIDGLSCSLEYENGVLVRASTRGDGVVGEDVTANVKAIKRIPKTLK-NAPEYLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD 231
           Y+  + F  L  E    G    A P   ++   RR++ ++
Sbjct: 172 YMPHDAFQHLCAEQELQG----AAPLQKSAQCCRRVSASE 207


>gi|302186902|ref|ZP_07263575.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae
           642]
          Length = 561

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 123/559 (22%), Positives = 235/559 (42%), Gaps = 98/559 (17%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR E+++L+Q+I+  DD Y++     I D  YD  +++       F   A S   + PL
Sbjct: 32  KARSEVTTLQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSCF---AVSTPESNPL 88

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
               G ++       H +P   + K+ +   ++ ++         K  N ++  ++PK+D
Sbjct: 89  KTAVGPLH-------HPVPHTGVNKLADEGSVKDWL---------KGRNDLW--IQPKVD 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ YEKG+ V    RGDG +G+D ++  R I  IP+ L      I++  GE+Y   
Sbjct: 131 GVAVTLVYEKGQLVQVISRGDGRNGQDWTSQARLIKAIPQQLPQAESPILQ--GELYWRL 188

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253
           +D +      +        N R+  +G+L R  ++P      +  FV         +  G
Sbjct: 189 DDHIQAASGSV--------NARSKVAGLLARQTISPQQ-ADAIGLFVWD-------WPNG 232

Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +M Q+   ++ +GF  +     +   +   + + E    R+ LP+  DG++ +  +  
Sbjct: 233 PADMTQRLAGLQTMGFEDSAAYTHSLENYAQAARWRE-HWYRNPLPFATDGVIMRQGQRP 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +       
Sbjct: 292 PAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRL------- 342

Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
                +D      ++G + R    DIR GD++ V  AG  IP++  ++            
Sbjct: 343 -----DDRTVSRISTGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVV------------ 385

Query: 430 FPSFCPICQSRVVRDLN---PKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                    SR     +   P+      ++  + T G  C +Q   RL  F  +    + 
Sbjct: 386 ---------SRAAERADMIIPRAADFHELSCWQATPG--CESQFRARLAWFSGKKGLALP 434

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G    +   ++            I  L      +  ++ NI GF + S   L DS++ 
Sbjct: 435 GIGPGTWNTLIEN----------GQIMGLLDWMTLNHAELVNIPGFAERSSAKLLDSLHS 484

Query: 545 RRNISLERFIFSLGIRHVG 563
            R    + ++ ++G+   G
Sbjct: 485 ARERPFQTWLKAIGLPPTG 503


>gi|293393631|ref|ZP_06637941.1| NAD-dependent DNA ligase adenylation domain protein [Serratia
           odorifera DSM 4582]
 gi|291423966|gb|EFE97185.1| NAD-dependent DNA ligase adenylation domain protein [Serratia
           odorifera DSM 4582]
          Length = 566

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 118/541 (21%), Positives = 220/541 (40%), Gaps = 81/541 (14%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG-PLNKI 78
           E+++LEQ+++  D  YYQ  + +I D  YD+L+++       +   A S D +  P   +
Sbjct: 37  EMTALEQQLTRWDVAYYQQGQGLIDDELYDSLRQKL----RLWQSCAGSGDGDALPALPV 92

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G        K  H +    L K+    D +  +      W +  D      ++PK+DG  
Sbjct: 93  G--------KTPHPVAHTGLRKL---ADRQAVVQ-----WMRGRDA---LWVQPKVDGVA 133

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +T+ Y++G  + A  RGDG  GED    +++IP +P  L  + PE + ++GE+++   D 
Sbjct: 134 VTLVYQRGTLIGAISRGDGKQGEDWLEKVKSIPAVPSSLP-DAPERVVLQGELFLIMTD- 191

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
              + + +  G     N R+  +G L R  P+ +   +  FV G        A    E L
Sbjct: 192 ---HQQNLTGG----VNARSRVAGALLRQRPSPLLAQIGLFVWGWPDGPATMA----ERL 240

Query: 259 QKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +++  LGFP+     R  N   G+  + +     ++ LP+  DG+V   D     +    
Sbjct: 241 RQLATLGFPLAQAYTRSVNDVDGVEHWRSHWH--QNPLPFVTDGVVIHQDSPPQGRYW-- 296

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
           R +   W ++ K+   Q   R+  +  +IGRTG +  V  L+P+ +           ++ 
Sbjct: 297 RNKPAEWAVAWKYPAVQQVARVNKVIFRIGRTGKIAVVLALDPIRL-----------DDK 345

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           +++ ++     +    +   GD V +   G  IP + D++   R  + QP + P      
Sbjct: 346 WVRRVNVGSLPLWQQLNALPGDHVAISLQGHGIPYLRDVV--WRAVERQPLTVPD-ANRY 402

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            +    +L P                C  Q + RL         N+ G+ +       + 
Sbjct: 403 HALSCFELQP---------------GCRQQLIARLVWLSGAQGLNLRGVNEASWQALIEQ 447

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++   D  TL  +Q      +  + G G     ++Y      R     R++ +L
Sbjct: 448 S----LVKNLVDWLTLTPQQ------LMAVPGIGHKRAQDIYQQFRLARQRPFARWLIAL 497

Query: 558 G 558
           G
Sbjct: 498 G 498


>gi|298489227|ref|ZP_07007245.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156246|gb|EFH97348.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 561

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 124/557 (22%), Positives = 232/557 (41%), Gaps = 92/557 (16%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR E+++L+Q+++  DD Y++     I D  YD  +++ +     F       DP    
Sbjct: 32  KARSEVTNLQQQMAAWDDSYHRQGISHIPDELYDQARQKLNLWRSCFAVSTPEADP---- 87

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
                 +  ++  + H +    + K+ +   ++ ++         K  N ++  ++PK+D
Sbjct: 88  ------LKTAVGPLPHPVAHTGVNKLADESSVKDWL---------KGRNDLW--IQPKVD 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ YEKG+ V A  RGDG  G+D ++  R I  IP+ LS +   I++  GE+Y   
Sbjct: 131 GVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQHLSHHDSLILQ--GELYWRL 188

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253
            D +      +        N R+  +G+L R  ++P      +  FV         +  G
Sbjct: 189 TDHIQATSGSV--------NARSKVAGMLARQTISPQQ-ADAIGLFVWD-------WPNG 232

Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +M Q+   ++ +GF  +     +   H   + + E    R+ LP+  DG++ +  +  
Sbjct: 233 PTDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWRE-HWYRNPLPFATDGVIMRQGQRP 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             ++   +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV +       
Sbjct: 292 PMQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRL------- 342

Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
                +D      ++G + R    DIR GD+V V  AG  IP++  +I            
Sbjct: 343 -----DDRTVSRISTGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRA--------- 388

Query: 430 FPSFCPICQSRVVRDLNPKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                    +  V  + P+      ++  + T G  C +Q   RL     +    + G+G
Sbjct: 389 ---------AERVEMITPQADDFHELSCWQATPG--CESQFRARLIWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               D   ++      I    D  TL        T++ NI GF + S   L  S+   R 
Sbjct: 438 PGTWDKLIENGQ----IESLLDWMTLNH------TELANIPGFAERSSAKLLASLQTARE 487

Query: 548 ISLERFIFSLGIRHVGA 564
              + ++ ++G+   G+
Sbjct: 488 RPFQTWLKAIGLPPTGS 504


>gi|251791698|ref|YP_003006419.1| NAD-dependent DNA ligase LigB [Dickeya zeae Ech1591]
 gi|247540319|gb|ACT08940.1| DNA ligase (NAD(+)) [Dickeya zeae Ech1591]
          Length = 560

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 139/610 (22%), Positives = 253/610 (41%), Gaps = 115/610 (18%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P  A S  +A +E++ L Q+++  D+ YY+  +  + D  YD L++        F   + 
Sbjct: 22  PCPAWSSARAEREVTQLGQQLTQWDNAYYEQGRSPVDDQVYDQLRQTLATWQRCFQ--SD 79

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +E     L+  G        K +H +    L+K+    +L++++ R    W         
Sbjct: 80  TERFAIRLSSTG--------KQSHPVAHTGLKKLSEPTELKQWVARHDGLW--------- 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIE 186
             ++PKIDG  +T+ YE+GK V A  RG+G  GED +  +R I  +P+ LS ++  +I +
Sbjct: 123 --VQPKIDGVAVTLVYEQGKLVSAVSRGNGRQGEDWTDKVRQINAVPQALSGMSGRQIFQ 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
             GE+Y+   +    + + ++ G     N R   +G +RR  P+ +   L  F+      
Sbjct: 181 --GELYLPVTE----HRQYVSGG----INARAQVAGEMRRKQPSPLLSRLGVFIWA---- 226

Query: 247 SEIFAKGQYEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              +  G  +M   L K+R +GF +     QA +     + + E +  R+ LP+  DG+V
Sbjct: 227 ---WPDGPADMPTRLAKLREMGFGLTADYTQAISSLEAAAQWRE-RWYRAPLPFVTDGVV 282

Query: 304 YKVDEFSLQKQLGERARSP-RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
            +  +    +   +   +P  W ++ K+      T +  +D++IGRTG +T V +L+PV 
Sbjct: 283 LRQAKEPAGRYWQD---TPAEWAVAWKYPLMNQVTEVTGVDVEIGRTGRMTVVLQLQPVM 339

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII---- 417
           +    ++   L            G V R  + D+  GDRV +  AG  IP++  ++    
Sbjct: 340 LDDKSVSRVNL------------GSVGRWRQWDVLPGDRVSISLAGLGIPRLDAVVWRAA 387

Query: 418 VNER--HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           V E    P   PF    F  +  SR                       C  Q L RL   
Sbjct: 388 VRESITVPAVSPFDV--FSCLQWSR----------------------ECQPQFLARLVWM 423

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
             R+  ++ G+ +       +    A  +        L+  Q  +         F +   
Sbjct: 424 SGRNGLSLSGISEATWRRLAQRGTLADVV----SWLALEPAQLAAAGD------FNEQQA 473

Query: 536 TNLYDSINKRRNISLERFIFSLGI------RHV--GAEIARSLAKYYLSYQNF------- 580
             +Y  + + R   L R++ +LG+      R+   GA + +   +  + +Q F       
Sbjct: 474 ARIYRQLQQARRQPLRRWLLALGLPVPSSARYALEGASLEQLQQRSIVEWQQFSGIGARR 533

Query: 581 AQEINNIIAH 590
           AQ I + + H
Sbjct: 534 AQRIRDFLHH 543


>gi|242241341|ref|YP_002989522.1| NAD-dependent DNA ligase LigB [Dickeya dadantii Ech703]
 gi|242133398|gb|ACS87700.1| DNA ligase (NAD(+)) [Dickeya dadantii Ech703]
          Length = 575

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 127/554 (22%), Positives = 224/554 (40%), Gaps = 86/554 (15%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           + S  +A +E+  L  +++  D  YY   +  I D  YD L++R +     F    ++  
Sbjct: 28  SWSALRAEQEMERLGHQLAVWDRAYYGAGESQIDDHTYDQLRKRLETWQACF-HADQTAF 86

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P  PL   G        K  H +    L+K+    +LR++I +    W           +
Sbjct: 87  PI-PLPTEG--------KTPHPVAHTGLKKLSEAGELRRWIAQHRGLW-----------V 126

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PKIDG  +T+ YE+GK V A  RG+G+ GED +  +R +P +P+ L    P+ + ++GE
Sbjct: 127 QPKIDGVAVTLVYEQGKLVSAVSRGNGYRGEDWTEKVRRMPQVPQQLP-TAPDQLVLQGE 185

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +Y+         D          AN R   +G +RR  P+ +   +  FV       +  
Sbjct: 186 LYLGMPGHRQQQDGG--------ANARARVAGEMRRSQPSSLASRIGVFVWEWPDGPQSM 237

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L ++R LGF +     Q  T     + + E +  R  LP+  DG+V +  +  
Sbjct: 238 P----ERLSQLRSLGFEMTERYTQPITTLEDAARWRE-RWYREPLPFATDGVVLRQAQEP 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             +    + +   W ++ K+   +  T +  ++I +GRTG +  V  L+P+ +    I  
Sbjct: 293 AARYW--QNKPAEWAVAWKYPLTRLVTEVEGVEIAVGRTGNMAVVLTLQPLTLDDKTIRR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
             +            G + R  + D+  GD+V +  AG+ IP+ +D +V  R    +P S
Sbjct: 351 VNV------------GSISRWRQWDVLPGDQVSIGLAGQGIPR-LDAVV-WRTSVREPMS 396

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK- 488
            P      +   +                T    C +Q + RL     +    + G+G+ 
Sbjct: 397 VPENVGFSEFTCL----------------TWREGCRSQFIARLVWLSGKRGLGLTGVGEG 440

Query: 489 --QQLDFFFKSEDPAFSIRI-PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             Q+L       D    + + PA +  L               G G      +Y    + 
Sbjct: 441 VWQRLVLRGMLPDVVSWLALTPAQLIGLG--------------GLGATQGEKVYQQFQRA 486

Query: 546 RNISLERFIFSLGI 559
           R   L R++ +LGI
Sbjct: 487 RRQPLSRWLMALGI 500


>gi|148989162|ref|ZP_01820552.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73]
 gi|147925385|gb|EDK76463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73]
          Length = 251

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 137/253 (54%), Gaps = 29/253 (11%)

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523
           C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI+ LQ         
Sbjct: 17  CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIYRLQE-------- 64

Query: 524 IENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
            E+ L   G  + S   LY +I   +  S E+ +F LGIRHVG++ ++ L +Y+ S +N 
Sbjct: 65  -EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLLLQYFHSIENL 123

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
            Q  +  +A           +  +G +IA+++  ++    +   +  L KE   ++    
Sbjct: 124 YQADSEEVAS----------IESLGGVIAKSLQTYFAAEGSEILLREL-KETGVNLNYKG 172

Query: 641 KNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
           + V ++  +    +V TG L++++R +A+  +  LGA V+  +S+KTD+++VG + GSKL
Sbjct: 173 QTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTDLVVVGADAGSKL 232

Query: 699 EKAQQLGVKIMNE 711
           +KAQ+LG+++ +E
Sbjct: 233 QKAQELGIQVRDE 245


>gi|146309759|ref|YP_001174833.1| NAD-dependent DNA ligase LigB [Enterobacter sp. 638]
 gi|257096556|sp|A4W502|LIGB_ENT38 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|145316635|gb|ABP58782.1| DNA ligase (NAD(+)) [Enterobacter sp. 638]
          Length = 556

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 150/624 (24%), Positives = 247/624 (39%), Gaps = 123/624 (19%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A +E++ L  +IS  +D Y+Q  K  + D  YD L  R       F     +ED
Sbjct: 22  AWSHAKAEQEIAGLNAQISRWNDAYWQEGKSDVSDEIYDQLNTRLKQWQQCFNHEPATED 81

Query: 71  ---PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               NG L               H      + K+   E+LR+++      W         
Sbjct: 82  IPPANGTLR--------------HPFAHTGVHKVSGKEELRQWMHSRRDLW--------- 118

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE- 186
             ++PK+DG  +T+ Y KGK V A  RGDG  GED +A ++AIP++P    LN+  ++  
Sbjct: 119 --VQPKVDGVAVTLVYRKGKLVQAISRGDGVKGEDWTARVQAIPSVP----LNVKGVLSE 172

Query: 187 --VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
             ++GE+++       +  +M  +      N R   +G++ R N   +   L  F+    
Sbjct: 173 SVLQGEIFLRCERH--IQQQMGGM------NARAKVAGMMMRQNNKTVLENLGVFIWA-- 222

Query: 245 KTSEIFAKGQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                +  G   M Q++  L   GF +     +A +    V   N  + + S+LP+  DG
Sbjct: 223 -----WPDGPQSMPQRLSELTKAGFTLTAQYTRAVSTADEVE-KNRKEWLTSSLPFVTDG 276

Query: 302 LVYK--VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           +V +  ++    Q   GE      W+++ K++       +  I   IGRTG ++ VA LE
Sbjct: 277 IVVRSSIEPVGEQWLPGEG----DWVVAWKYSPVSQVAEVNAIQFAIGRTGKISVVAVLE 332

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV- 418
            + +    +    L +    + L           DI  GD++LV  AG+ IP+V  ++  
Sbjct: 333 SIQLDDKRVKRVNLGSVSRWQAL-----------DIAPGDQILVSLAGQGIPRVDKVVWR 381

Query: 419 -NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA---CSAQQLERLKH 474
            N+R   A P S                          H  T   A   C  Q   RL  
Sbjct: 382 GNDRKKPAPPAS------------------------QYHSLTCFYASPECLEQFFARLVW 417

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
             S+   N+EGLG        ++    F       IF+     Q    +IE   G     
Sbjct: 418 LSSKQILNMEGLGDSSWRLLHQTYH--FE-----HIFSWLAVTQ---EQIEKTSGLNPAR 467

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L+      R+   +++I +LGI    A      A   LS  ++ Q         + D
Sbjct: 468 RLQLWHRFELARHHPFKKWIKALGIPLPQA------AADALSVHSWRQ-------LQDKD 514

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQN 618
            +S  ++P +G   A+ +VEF  +
Sbjct: 515 AVSWNQLPGIGTEKARKLVEFVHD 538


>gi|289672514|ref|ZP_06493404.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae
           FF5]
          Length = 561

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 122/563 (21%), Positives = 232/563 (41%), Gaps = 96/563 (17%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +AR E+++L+Q+I+  DD Y++     I D  YD  +++       F   A S   
Sbjct: 28  WSAAKARSEITALQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSCF---AVSTPE 84

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + PL    G +        H +P   + K+ +   ++ ++         K  N ++  ++
Sbjct: 85  SNPLKTAVGPL-------PHPVPHTGVNKLADEGSVKDWL---------KGRNDLW--IQ 126

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +T+ YE+G+ V A  RGDG  G+D ++  R I TIP+ L      +++  GE+
Sbjct: 127 PKVDGVAVTLVYEQGQLVQAISRGDGRKGQDWTSQARLIKTIPQQLPQAESPVLQ--GEL 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEI 249
           Y   +D +      +        N R+  +G+L R  ++P      +  FV         
Sbjct: 185 YWRLDDHIQAASGSV--------NARSKVAGLLARQTISPQQ-ADAIGLFVWD------- 228

Query: 250 FAKGQYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           +  G  +M Q+   ++ +GF  +         +   + + E    R+ LP+  DG++ + 
Sbjct: 229 WPNGPADMAQRLAGLQAMGFEDSAAYTHPLQNYAQAARWRE-HWYRNPLPFATDGVIMRQ 287

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            +    ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +   
Sbjct: 288 GQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDR 345

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++  +  +    + L           DIR GD+V V  AG  IP++  ++         
Sbjct: 346 TVSRISTGSLQRWQTL-----------DIRPGDQVAVSLAGLTIPRLDGVV--------- 385

Query: 427 PFSFPSFCPICQSRVVRDLN---PKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                       SR     +   P+      ++  + T G  C +Q   RL     +   
Sbjct: 386 ------------SRAAERADMIIPRADDFHELSCWQATPG--CESQFRARLAWLSGKKGL 431

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
            + G+G    +   ++            I  L      +  ++ NI GF + S   L DS
Sbjct: 432 ALPGVGPGTWNTLIEN----------GQIMGLLDWMTLNHAELVNIPGFAERSSAKLLDS 481

Query: 542 INKRRNISLERFIFSLGIRHVGA 564
           +   R    + ++ ++G+   G 
Sbjct: 482 LQTARERPFQTWLKAIGLPPTGG 504


>gi|238784014|ref|ZP_04628030.1| DNA ligase B [Yersinia bercovieri ATCC 43970]
 gi|238715122|gb|EEQ07118.1| DNA ligase B [Yersinia bercovieri ATCC 43970]
          Length = 553

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 132/567 (23%), Positives = 246/567 (43%), Gaps = 86/567 (15%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA--IAHAFPDLARSE 69
            S E+   E++SL++++   D  Y+Q    ++ D  YD L+ +     +    PD   +E
Sbjct: 18  WSAERVSLEVNSLKKQLDKWDAAYHQQGVSLLEDDIYDQLQIKLQGWQVCGGQPD--STE 75

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           +   P +           K +H +    L+K+ +  ++  ++ R  + W           
Sbjct: 76  NKGVPGHG----------KFSHPVAHTGLKKLKSETEVANWMLRREKLW----------- 114

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y+ GK +    RGDG  G++ S     I  IP  ++   P ++ ++G
Sbjct: 115 VQPKVDGVAVTLVYQNGKLMQLLSRGDGWKGQNWSDKAPFIAAIPHYIA-GAPPLLTLQG 173

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++          +    G     N R++ +G L R + + +   L  F+         
Sbjct: 174 ELFLQME-----GHKQAQFGG---VNARSSVAGALMRKSSSPLLAQLGIFIWA------- 218

Query: 250 FAKGQYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           +  G   M++K   ++ +GFP+     +  T    V+ + E +  ++ LP+  DG+V + 
Sbjct: 219 WPDGPKSMVEKNMRLQDMGFPLTAQYSKPVTSAKDVARWRE-RWHQTPLPFVTDGVVIRQ 277

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +E    +    +A    W ++ K+  +Q    + DI   IGRTG +T V ++ PV I   
Sbjct: 278 EEEPAGRYW--QAVPGPWSVAWKYPPQQQMAEIKDIQFTIGRTGKITVVLQVSPVKI--- 332

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH-- 422
                   ++ +I+ ++          DI  GD+V +  AG+ IP++ +++  VN+RH  
Sbjct: 333 --------DDKWIRRVNIGSIARWRQWDITTGDQVTITLAGQSIPRLNNVVWRVNQRHKF 384

Query: 423 --PDAQPF-------SFPSFC-PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
             PD   F       + P  C P   SR++    PK    +  H  +GGL       E +
Sbjct: 385 TPPDGDKFHQLSCFRNLPYECEPQFLSRLIWLSGPKG---LNMHNISGGLW-----RELI 436

Query: 473 KHFVSRDAFNIEGLGKQQL-DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
            H + +D      L   Q+ D    S D A SI         QR  Q   ++    LGF 
Sbjct: 437 HHGLVKDLVGWLSLTPDQIADIPGISRDRAESI-----YQQFQRTTQKPFSQWLQALGFP 491

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLG 558
            V+ +N +    +R++I+  R +  +G
Sbjct: 492 LVTFSNGHWHSLQRKSIAEWRLMPGVG 518


>gi|149911106|ref|ZP_01899733.1| DNA ligase, NAD-dependent, putative [Moritella sp. PE36]
 gi|149805856|gb|EDM65845.1| DNA ligase, NAD-dependent, putative [Moritella sp. PE36]
          Length = 413

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 185/404 (45%), Gaps = 47/404 (11%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +S LE +I  H   YY    P++ D E+D L      ++H    +         L +
Sbjct: 50  QHRISYLETQIIKHRRIYYAGQTPLLHDGEFDLLVDELTVLSHCLSPV---------LTQ 100

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IGG  NL              +++ ++  +R+  T + +F+Q   D  +   ++PK DG 
Sbjct: 101 IGGG-NLQHNDTRQRDRQPHRQQMLSLNSVRER-TAVDKFYQLHQDQQLL--IQPKFDGM 156

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + YEKG  V A+ RGDG  G+D+ A +     +  +++   P  + + GE+Y+ + D
Sbjct: 157 AIELVYEKGMLVGASSRGDGKQGKDLLALMLRSNAVNSMIA--YPYTLVIHGELYVGQQD 214

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP--TDIT--RYLNFFVHGLGKTSEIFAKG 253
           +           R  Y + R+  +GI  +L+P  TD+   R++ +        +E+    
Sbjct: 215 WQL---------RGKYVSSRHMTAGIASQLSPAQTDVMSLRFMPWRWIDSPYNNELMGLA 265

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q  ML      GF   + +         + Y+  +   ++T  + +DG+V K+   +LQ+
Sbjct: 266 QLAML------GFADMSKMSHVIDRPQDIDYW--LAHYQNTEAFLLDGIVLKLANNTLQR 317

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           Q G    +PRW ++ KF   +  + ++DI  Q+G++G +TP+  ++P+ + G  +T  + 
Sbjct: 318 QYGHTQHAPRWALALKFTGPKGLSNVIDITYQVGKSGRVTPIIHVQPLALSGRQVTRVSG 377

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
            ++ ++               I VG +V ++  G   P++  ++
Sbjct: 378 RSQPWLL-----------QSKIEVGSQVEIELVGNATPQLTRLV 410


>gi|28867612|ref|NP_790231.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|81840358|sp|Q88AK8|LIGB_PSESM RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|28850847|gb|AAO53926.1| DNA ligase, NAD-dependent, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 561

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 126/560 (22%), Positives = 227/560 (40%), Gaps = 92/560 (16%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +A  E+++L+Q+I+  DD Y++     I D  YD  +++ +     F   A S   
Sbjct: 28  WSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCF---AVSTPQ 84

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             PL    G +        H +P   + K+ + +D++ ++      W           ++
Sbjct: 85  ANPLKTATGPL-------AHPVPHTGVNKLADEKDVKAWLKGRTDLW-----------IQ 126

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +T+ Y++G+ V A  RGDG  G+D +   R I  IP+   L  P+ + ++GE+
Sbjct: 127 PKVDGVAVTLVYDEGRLVQAISRGDGTQGQDWTPQARLIKAIPQ--QLPQPDSLILQGEL 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEI 249
           Y    D +      +        N R+  +G+L R  ++P      +  FV         
Sbjct: 185 YWRLTDHVQAASGSV--------NARSKVAGMLARQTISPQQ-ADAIGLFVWD------- 228

Query: 250 FAKGQYEMLQK---MRCLGFPVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +  G  +M Q+   ++ +GF  N+ V   +    H   + + E    R+ LP+  DG++ 
Sbjct: 229 WPDGPADMAQRLAGLQAMGF--NHSVAYTHPLENHAQAADWRE-HWYRNPLPFATDGVIM 285

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           +  +    ++   +A +P W+ + K    QA   +  +   IGRTG + PV  L PV + 
Sbjct: 286 RQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRL- 342

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
                      +D      ++G + R  + DIR GD + V  AG  IP++  ++   R  
Sbjct: 343 -----------DDRTVSRISAGSLSRWEKLDIRPGDHIAVSLAGLTIPRLDGVV--SRAA 389

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +    S P      +S   +                    C +Q   RL     +    +
Sbjct: 390 ERAEMSVPHASDYHESSCWQ----------------AAPGCESQFRARLVWLSGKKGLAL 433

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G+G    D   +S      I    D  TL         ++ NI G  + S   L DS+ 
Sbjct: 434 PGVGPGTWDKLIESG----HISGLLDWMTLNH------AELANIPGLAERSSDKLLDSLQ 483

Query: 544 KRRNISLERFIFSLGIRHVG 563
             R    + ++ ++G+   G
Sbjct: 484 TARERPFQTWLKAIGLPPAG 503


>gi|257482942|ref|ZP_05636983.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011813|gb|EGH91869.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 561

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 126/557 (22%), Positives = 233/557 (41%), Gaps = 92/557 (16%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR E+++L+Q+++  DD Y++     I D  YD  +++       F   A S+  + PL
Sbjct: 32  KARSEVTNLQQQMAAWDDSYHRQGLSKIPDELYDQARQKLSVWRSCF---AISKPESDPL 88

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
               G +        H +P   + K+ + + ++ ++         K  N ++  ++PKID
Sbjct: 89  TTAVGPL-------PHPVPHTGVNKLEDEDSVKAWL---------KGRNDLW--IQPKID 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ YEKG+ V A  RGDG  G+D ++  R I  IP+ L  +   I++  GE+Y   
Sbjct: 131 GVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQRLPHHDSLILQ--GELYWRL 188

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253
            D +      +        N R+  +G+L R  ++P      +  FV         +  G
Sbjct: 189 TDHIQATSGSV--------NARSKVAGMLARQTISPQQ-ADAIGLFVWD-------WPNG 232

Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +M Q+   ++ +GF  +     +   H   + + E    R+ LP+  DG++ +  +  
Sbjct: 233 PTDMAQRLSGLQAMGFEGSEAYTLSLENHVQAARWRE-HWYRNPLPFATDGVIMRQGQRP 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             ++   +A +P W+ + K    QA   +  +   +GR+G +TPV  L PV +       
Sbjct: 292 PAQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRL------- 342

Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
                +D      ++G + R    DIR GD+V V  AG  IP++  +I            
Sbjct: 343 -----DDRTVSRISTGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRA--------- 388

Query: 430 FPSFCPICQSRVVRDLNPKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                    +  V  + P+      ++  + T G  C +Q   RL     +    + G+G
Sbjct: 389 ---------AERVEMIIPQADDFHELSCWQATPG--CESQFRARLIWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               D   ++      I    D  TL         ++ NI GF + S   L  S+   R 
Sbjct: 438 PGTWDKLIENGQ----IESLLDWMTLNH------AELANIPGFAERSSAKLLASLQTARE 487

Query: 548 ISLERFIFSLGIRHVGA 564
              + ++ ++G+   G+
Sbjct: 488 RPFQTWLKAIGLPPTGS 504


>gi|148550043|ref|YP_001270145.1| NAD-dependent DNA ligase LigB [Pseudomonas putida F1]
 gi|257096559|sp|A5WA01|LIGB_PSEP1 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|148514101|gb|ABQ80961.1| DNA ligase (NAD(+)) [Pseudomonas putida F1]
          Length = 566

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 187/408 (45%), Gaps = 55/408 (13%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S +QA+ E++ L   ++  D+ Y++    ++ D  YD  + R + +   F   A    P+
Sbjct: 27  SPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSRERLNHLQQCF---AVGTSPS 83

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            PL    G        V H +P   ++K+ + + + +++      W           ++P
Sbjct: 84  -PLASARG-------PVPHPVPHTGVDKLADRQAVARWMAGKSGVW-----------VQP 124

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGE 190
           K+DG  +++ Y++G+ V    RGDG +G D S   R IP +  V +  +PE +++  +GE
Sbjct: 125 KVDGVAVSLTYQQGRLVQLTSRGDGVNGHDWS---RHIPQLDAV-TRQLPEALDLHLQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           +Y      L L+D + A  +   AN R   +G+L R   T      +  FV G     E 
Sbjct: 181 LY------LRLSDHVQA--KAGSANARGTVAGLLARKQLTGAQGNAIGLFVWGWPHGPE- 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E L ++  LGFP +     A       +++ E    RS LP+  DG++ +    
Sbjct: 232 ---QQAERLAQLARLGFPDSQLYSIAIDTLEDAAHWRE-HWYRSALPFATDGVILRQSSR 287

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
              ++   +A++P W+ + K+   QA   + D+  ++GRTG +TPV  L PV +    IT
Sbjct: 288 PPAERW--QAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHLLPVTLDDRRIT 345

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
             +L +      L           DIR GD+V +  AG  IP++  ++
Sbjct: 346 QVSLGSLARWHTL-----------DIRPGDQVAISLAGLTIPRLEQVV 382


>gi|254673677|emb|CBA09272.1| DNA ligase [Neisseria meningitidis alpha275]
          Length = 414

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 168/392 (42%), Gaps = 107/392 (27%)

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P  +P+  P+ CPIC+S + R+     G+ VA  RC+GG+ C AQ+ + L HF SR A +
Sbjct: 33  PLYKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRAQGLIHFASRKAMD 86

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TTKIENILGFGDVSV 535
           I+GLG++Q++     +     +R  AD++     TLQ+ ++T+  T    + +     SV
Sbjct: 87  IDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTVAESDQMPSEGSSV 142

Query: 536 --------------TNLYDSINKRRNISLERFIFSLGIRHV------------------- 562
                          N+   I   +   L RF+F+LGIRHV                   
Sbjct: 143 GASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVR 202

Query: 563 -------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL------ 603
                        G  +ARS+A ++   +  A  I+ ++A         + +P       
Sbjct: 203 RAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQAQAVSLPAAQYAEP 261

Query: 604 -----------VGDIIAQAIVEF-----------------YQNPRNICAVEALLKEVS-- 633
                      + +  AQA+ E                  +Q  R+     ALL+ +   
Sbjct: 262 QRWIARLPGFKISENKAQALWELAGKSIEGLQTDKSLPADWQAWRSEPQNAALLENLKTF 321

Query: 634 ----PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
               PS     +    ++  +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD
Sbjct: 322 FAQMPSEDEAAQGSDGINEAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGKVSGSVSKKTD 381

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 382 YVVAGEAAGSKLEKANALGVSVLSEAELLTLL 413


>gi|213967844|ref|ZP_03395991.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
 gi|301382481|ref|ZP_07230899.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062268|ref|ZP_07253809.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato K40]
 gi|302132915|ref|ZP_07258905.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927620|gb|EEB61168.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
          Length = 563

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 129/560 (23%), Positives = 229/560 (40%), Gaps = 92/560 (16%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +A  E+++L+Q+I+  DD Y++     I D  YD  +++ +     F   A S   
Sbjct: 30  WSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCF---AVSTPQ 86

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             PL    G +        H +P   + K+ + +D++ ++      W           ++
Sbjct: 87  ANPLKTATGPL-------AHPVPHTGVNKLADEKDVKAWLKGRTDLW-----------IQ 128

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +T+ Y++G+ V A  RGDG  G+D +   R I  IP+   L  P+ + ++GE+
Sbjct: 129 PKVDGVAVTLVYDEGRLVQAISRGDGTQGQDWTPQARLIKAIPQ--QLPQPDSLILQGEL 186

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEI 249
           Y    D +      +        N R+  +G+L R  ++P      +  FV         
Sbjct: 187 YWRLTDHVQAASGSV--------NARSKVAGMLARQTISPQQ-ADAIGLFVWD------- 230

Query: 250 FAKGQYEMLQK---MRCLGFPVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +  G  +M Q+   ++ LGF  N+ V   +    H   + + E    R+ LP+  DG++ 
Sbjct: 231 WPDGPADMAQRLAGLQALGF--NHSVAYTHPLENHAQAADWRE-HWYRNPLPFATDGVIM 287

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           +  +    ++   +A +P W+ + K    QA   +  +   IGRTG + PV  L PV + 
Sbjct: 288 RQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRL- 344

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
                      +D      ++G + R  + DIR GD + V  AG  IP++  ++   R  
Sbjct: 345 -----------DDRTVSRISAGSLSRWEKLDIRPGDHIAVSLAGLTIPRLDGVV--SRAA 391

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +    S P            D +    +L       G   C +Q   RL     +    +
Sbjct: 392 ERAEMSVPH---------ASDYH----ELSCWQAAPG---CESQFRARLVWLSGKKGLAL 435

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G+G    D   +S      I    D  TL         ++ NI G  + S   L DS+ 
Sbjct: 436 PGVGPGTWDKLIESG----HISGLLDWMTLNH------AELANIPGLAERSSDKLLDSLQ 485

Query: 544 KRRNISLERFIFSLGIRHVG 563
             R    + ++ ++G+   G
Sbjct: 486 TARERPFQTWLKAIGLPPAG 505


>gi|238797649|ref|ZP_04641145.1| DNA ligase B [Yersinia mollaretii ATCC 43969]
 gi|238718513|gb|EEQ10333.1| DNA ligase B [Yersinia mollaretii ATCC 43969]
          Length = 565

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 126/565 (22%), Positives = 244/565 (43%), Gaps = 82/565 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S E+   E+ SL++++   D  Y+Q    ++ D  YD L+ +          + R +  +
Sbjct: 31  STERVSLEVHSLQKQLDQWDAIYHQQGVSLLTDDLYDQLQAKLQGW-----QVCRGQPDD 85

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++ G       K +H +    L+K+ +  +L  ++ R  + W           ++P
Sbjct: 86  TENRRVPGHG-----KFSHPVAHTGLKKLKDEAELANWMQRREKIW-----------VQP 129

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ Y+ GK      RGDG  G++ S     I  IP+ ++   P ++ ++GE++
Sbjct: 130 KVDGIAVTLVYQNGKLAQLLSRGDGLKGQNWSDKASFITAIPQTIAAAAP-MLTLQGELF 188

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           + +        +    G     N R++ +G L R + + +   L  F+         +  
Sbjct: 189 LQRE-----GHKQAQFGG---VNARSSVAGALMRKSSSPLLAQLGIFIWA-------WPD 233

Query: 253 GQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           G   M++K R L   GFP+     +  +    V+ + E +  ++ LP+  DG+V + +E 
Sbjct: 234 GPKSMMEKNRRLQKMGFPLTAQYSKPVSSAKDVAQWRE-RWYQTPLPFVTDGVVIRQEEE 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
              +    +A    W ++ K+  +Q  T + DI   IGRTG +T + ++ PV I      
Sbjct: 293 PAGRYW--QAVPGPWSVAWKYPPQQKMTEIKDIHFTIGRTGKITVILQVSPVKI------ 344

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH----P 423
                ++ +I+ ++          DI +GD+V +  AG+ IP++ +++  V++RH    P
Sbjct: 345 -----DDKWIRRVNIGSIARWRQWDITLGDQVTIALAGQGIPRLDNVVWRVSQRHELTPP 399

Query: 424 DAQPF-------SFPSFC-PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           +   F         P  C P   SR++    PK   +    R  GG        E + H 
Sbjct: 400 ERDKFHQLSCFRHLPHECEPQFLSRLIWLSGPKGLDM----RSIGGGLWR----ELIHHG 451

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDVS 534
           + +D      L   QL     ++ P  S+    DI+   QR +Q   ++    LGF  V 
Sbjct: 452 LVKDLVGWLSLTTDQL-----ADIPGVSLERAEDIYQQFQRAKQKPFSQWLQALGFPRVV 506

Query: 535 VTNLYDSINKRRNISLERFIFSLGI 559
            ++ +    +R++I+       +G+
Sbjct: 507 SSDDHWHALQRKSITEWSLASGVGL 531


>gi|330989493|gb|EGH87596.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 561

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 128/560 (22%), Positives = 232/560 (41%), Gaps = 92/560 (16%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +AR E+++L+Q+++  DD Y++     I D  YD  +++       F   A S+  +
Sbjct: 29  SAAKARSEVTALQQQVAAWDDSYHRQGLSKIPDELYDQARQKLSVWRSCF---AISKPES 85

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            PL    G +        H +P   + K+ + + ++ ++      W           ++P
Sbjct: 86  DPLTTAVGPL-------PHPVPHTGVNKLEDEDSVKAWLKGRKDLW-----------IQP 127

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +T+ YEKG+ V A  RGDG  G+D ++  R I  IP+ L      I++  GE+Y
Sbjct: 128 KIDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQNLFHRDSLILQ--GELY 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIF 250
                   L D + A+      N R+  +G+L R  ++P      +  FV         +
Sbjct: 186 WR------LTDHIQAISGS--VNARSKVAGMLARQTISPQQ-ADAIGLFVWD-------W 229

Query: 251 AKGQYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             G  +M Q+   ++ +GF  +     +   H   + + E    R+ LP+  DG++ +  
Sbjct: 230 PNGPTDMAQRLAGLQAMGFEGSEAYTLSLENHVQAARWRE-HWYRNPLPFATDGVIMRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  +   +GR+G +TPV  L PV +    
Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRL---- 342

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
                   +D      ++G + R    DIR GD+V V  AG  IP++  +I         
Sbjct: 343 --------DDRTVSRISTGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRA------ 388

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                       +  V  + P+      ++  + T G  C +Q   RL     +    + 
Sbjct: 389 ------------AERVEMIIPQADDFHELSCWQATPG--CESQFRARLIWLSGKKGLALP 434

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G    D   ++      I    D  TL         ++ NI GF + S   L  S+  
Sbjct: 435 GVGPGTWDKLIENGQ----IESLLDWMTLNH------AELANIPGFAERSSAKLLASLQT 484

Query: 545 RRNISLERFIFSLGIRHVGA 564
            R    + ++ ++G+   G+
Sbjct: 485 ARERPFQTWLKAIGLPPTGS 504


>gi|237756712|ref|ZP_04585213.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691122|gb|EEP60229.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 215

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/201 (37%), Positives = 116/201 (57%), Gaps = 12/201 (5%)

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
           I+NI GFG  SV NL ++I + +   L R I+ LGIR+VG   A++LA       +  + 
Sbjct: 25  IKNIPGFGPKSVENLKNAIEESKKRPLYRLIYGLGIRYVGEVTAKTLA-------SAVKC 77

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           I+++      D   LI++P VGD +A  I  F+ N +N+  ++ L +++       E+  
Sbjct: 78  IDDLKDFTITD---LIKLPDVGDKVASEIYNFFHNQQNLKMIQEL-RDLGVKTCHEEEEK 133

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
             ++     VFTGTL+   R KA+E V  LG  V   +S+K   ++VG+ PGSKL+KAQ+
Sbjct: 134 KGKLAGLNFVFTGTLKCCSREKAKEIVESLGGNVLDTVSKKVHYLVVGEEPGSKLQKAQK 193

Query: 704 LG-VKIMNEEQFLFLLQQYNT 723
           LG VKI+NEE+FL L+   N 
Sbjct: 194 LGTVKIINEEEFLKLIGGENA 214


>gi|330940502|gb|EGH43581.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 561

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 122/562 (21%), Positives = 230/562 (40%), Gaps = 96/562 (17%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +AR E+++L+Q+I+  DD Y++     I D  YD  +++       F   A S   +
Sbjct: 29  SAAKARSEITALQQQIAAGDDSYHRQGISQIPDELYDQARQKLSLWRSCF---AVSTPES 85

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            PL    G +        H +P   + K+ +   ++ ++         K  N ++  ++P
Sbjct: 86  NPLKTAVGPL-------PHPVPHTGVNKLADEGSVKDWL---------KGRNDLW--IQP 127

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ YE+G+ V A  RGDG  G+D +   R I TIP+ L      +++  GE+Y
Sbjct: 128 KVDGVAVTLVYEQGQLVQAISRGDGRKGQDWTLQARLIKTIPQQLPQAESPVLQ--GELY 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTD---ITRYLNFFVHGLGKTS 247
              +D +      +        N R+  +G+L R  ++P     I  ++  + +G    +
Sbjct: 186 WRLDDHIQAASGSV--------NARSKVAGLLARQTISPQQADAIGLFVWDWPNGPADMA 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q    +       P+ N    A    G   +Y      R+ LP+  DG++ +  
Sbjct: 238 QRLAGLQAMGFEDSAAYTHPLQN---YAQAARGREHWY------RNPLPFATDGVIMRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    
Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR GD++ V  AG  IP++  ++          
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQIAVSLAGLTIPRLDGVV---------- 385

Query: 428 FSFPSFCPICQSRVVRDLN---PKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                      SR     +   P+      ++  + T G  C +Q   RL     +    
Sbjct: 386 -----------SRAAERADMIIPRADDFHELSCWQATPG--CESQFRARLAWLSGKKGLA 432

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           + G+G    +   ++            I  L      +  ++ NI GF + S   L DS+
Sbjct: 433 LPGVGPGTWNTLIEN----------GQIMGLLDWMTLNHAELVNIPGFAERSSAKLLDSL 482

Query: 543 NKRRNISLERFIFSLGIRHVGA 564
              R    + ++ ++G+   G 
Sbjct: 483 QTARERPFQTWLKAIGLPPTGG 504


>gi|296100486|ref|YP_003610632.1| NAD-dependent DNA ligase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295054945|gb|ADF59683.1| NAD-dependent DNA ligase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 556

 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 145/618 (23%), Positives = 242/618 (39%), Gaps = 111/618 (17%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +A KE+++L  +I   DD Y+Q     + D  YD L  R     H F   +    P
Sbjct: 23  WSQARAEKEIATLSAQIKRWDDAYWQQGISEVNDEVYDQLNGRLKQWQHCFGHAS----P 78

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +  L  + G       ++ H +    + K+ + E+L +++      W           ++
Sbjct: 79  DAALPALTG-------RIKHPVAHTGVHKVSSKEELGQWMHARRNLW-----------MQ 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +T+ Y  G    A  RGDG  GED ++ +R IP++P+ L   +   + ++GE+
Sbjct: 121 PKVDGVAVTLVYRGGTLAQAISRGDGLKGEDWTSQVRLIPSVPQHLYGALANSV-LQGEL 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           +  + +   +  +M  +      N R   +G + R       R +  F+         + 
Sbjct: 180 FWQRENH--IQQQMGGM------NARAKVAGAMMRQQDNAFLREVGVFIWA-------WP 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS-----TLPYDIDGLVYK- 305
            G  EM   +  L    + G      +   V +   ++  RS      LP+  DG+V + 
Sbjct: 225 DGPKEMKTALAELS---DAGFTLTARYTLPVEHIEAVEKQRSAWHTAALPFATDGIVVRS 281

Query: 306 VDEFSLQKQL-GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
            DE   +  L GE +    W+++ K+        + DI   +GRTG +  VA LEPV + 
Sbjct: 282 ADELPGENWLPGEGS----WVVAWKYPPVAQVAEVRDIHFTVGRTGKIAVVAGLEPVRLD 337

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
              +   +L            G V R  R DI  GD++ V  AG+ IP+   ++   R  
Sbjct: 338 DKQVQRVSL------------GSVGRWQRLDIAPGDQIQVSLAGQGIPRFDKVVW--RGT 383

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D Q    P   P   S      +P+               C  Q   RL    S+   +I
Sbjct: 384 DRQKPEPP--VPQYHSLSCFYASPE---------------CMEQFFARLTWLSSKQGLDI 426

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
            GLG+      +++   +  FS       + L  + Q  TT      GF       L+  
Sbjct: 427 AGLGESGWRALWQAHRFEHIFS-------WLLLTQAQLQTTP-----GFSAARGLALWHQ 474

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
            N  R     R+I ++G+    A +    A   LS+Q   Q        +  DW +L   
Sbjct: 475 FNLVRERPFIRWIMAMGVPLAQATLK---AAGELSWQTMHQR-------SAMDWQTL--- 521

Query: 602 PLVGDIIAQAIVEFYQNP 619
           P  G+  A+ IV +   P
Sbjct: 522 PGTGEEKARQIVNWLHAP 539


>gi|330891383|gb|EGH24044.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. mori str.
           301020]
          Length = 561

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 125/556 (22%), Positives = 230/556 (41%), Gaps = 90/556 (16%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR E+++L+Q+++  DD Y++     I D  YD  +++       F   A S+  + PL
Sbjct: 32  KARSEVTALQQQVATWDDSYHRQGLSKIPDELYDQARQKLSVWRSCF---AISKPESDPL 88

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
               G +        H +P   + K+ + + ++ ++      W           ++PKID
Sbjct: 89  TTAVGPL-------PHPVPHTGVNKLEDEDSVKAWLKGRKDLW-----------IQPKID 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ YEKG+ V A  RGDG  G+D ++  R I  IP+ L  +   I++  GE+Y   
Sbjct: 131 GVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQRLPQHDSLILQ--GELYWR- 187

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253
                L D + A+      N R+  +G+  R  ++P      +  FV         +  G
Sbjct: 188 -----LTDHIQAISGS--VNARSKVAGMPARQTISPQQ-ADAIGLFVWD-------WPNG 232

Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +M Q+   ++ +GF  +     +   H   + + E    R+ LP+  DG++ +  +  
Sbjct: 233 PGDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWRE-HWYRNPLPFATDGVIMRQGQRP 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             ++   +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV +    ++ 
Sbjct: 292 PMQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRLDDRTVSR 349

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +  +    + L           DIR GD+V V  AG  IP++  +I             
Sbjct: 350 ISTGSLQRWQTL-----------DIRPGDQVAVSLAGLTIPRLDGVISRA---------- 388

Query: 431 PSFCPICQSRVVRDLNPKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                   +  V  + P+      ++  + T G  C +Q   RL     +    + G+G 
Sbjct: 389 --------AERVEMIIPQADDFHELSCWQATPG--CESQFRARLIWLSGKKGLALPGVGP 438

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
              D   ++      I    D  TL         ++ NI GF + S   L  S+   R  
Sbjct: 439 GTWDKLIENGQ----IESLLDWMTLNH------AELANIPGFAERSSAKLLASLQTARER 488

Query: 549 SLERFIFSLGIRHVGA 564
             + ++ ++G+   G+
Sbjct: 489 PFQTWLKAIGLPPTGS 504


>gi|289623888|ref|ZP_06456842.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289646918|ref|ZP_06478261.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330869835|gb|EGH04544.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 561

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/557 (21%), Positives = 228/557 (40%), Gaps = 92/557 (16%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR E+++L+Q+++  DD Y++     I D  YD  +++ +     F       DP    
Sbjct: 32  KARSEVTNLQQQMAAWDDSYHRQGISHIPDELYDQARQKLNLWRSCFAVSTPEADP---- 87

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
                 +  ++  + H +P   + K+ +   ++ ++      W           ++PK+D
Sbjct: 88  ------LKTAVGPLPHPVPHTGVNKLADESSVKDWLKGRKDLW-----------IQPKVD 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ YEKG+ V A  RGDG  G++ ++  R I  IP+ L  +   I++  GE+Y   
Sbjct: 131 GVAVTLVYEKGQLVQAISRGDGRKGQNWTSQARLIKAIPQRLPQHDSLILQ--GELYWRL 188

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253
            D +      +        N R+  +G+L R  ++P      +  FV         +  G
Sbjct: 189 TDHIQATSGSV--------NARSKVAGMLARQTISPQQ-ADAIGLFVWD-------WPNG 232

Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +M Q+   ++ +GF  +     +   H   + + E    R+ LP+  DG++ +  +  
Sbjct: 233 PTDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWRE-HWYRNPLPFATDGVIMRQGQRP 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             ++   +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV +       
Sbjct: 292 PMQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRL------- 342

Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
                +D      ++G + R    DIR GD+V V  AG  IP++  +I            
Sbjct: 343 -----DDRTVSRISTGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRA--------- 388

Query: 430 FPSFCPICQSRVVRDLNPKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                    +  V  + P+      ++  + T G  C +Q   RL     +    + G+G
Sbjct: 389 ---------AERVEMIIPQADDFHELSCWQATPG--CESQFRARLIWLSGKKGLALSGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               D   ++      I    D  TL         ++ NI GF + S   L  S+   R 
Sbjct: 438 PGTWDKLIENGQ----IESLLDWMTLNH------AELANIPGFAEHSSAKLLASLQTARE 487

Query: 548 ISLERFIFSLGIRHVGA 564
              + ++ ++G+   G+
Sbjct: 488 RPFQTWLKAIGLPPTGS 504


>gi|330874636|gb|EGH08785.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 561

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 128/563 (22%), Positives = 233/563 (41%), Gaps = 98/563 (17%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +A  E+++L+Q+I+  DD Y+      I D  YD  +++ +     F   A S   
Sbjct: 28  WSHAKASSEITALQQQIAKWDDSYHLQGLSQIPDELYDQSRQKLNDWRSCF---AVSTPQ 84

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             PL    G +       TH +P   + K+ + +D++ ++      W           ++
Sbjct: 85  ANPLKTATGPL-------THPVPHTGVNKLADEKDVKAWLKGRTDLW-----------IQ 126

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRG 189
           PK+DG  +T+ Y++G+ V A  RGDG  G+D +   + I  IP+     +P++  + ++G
Sbjct: 127 PKVDGVAVTLVYDEGRLVQAISRGDGTKGQDWTPQAQLIKAIPQ----QLPQLGSLILQG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTS 247
           E+Y   +D +      +        N R+  +G+L R  ++P      +  FV       
Sbjct: 183 ELYWRLSDHVQAASGSV--------NARSKVAGMLARQSISPQQ-ADAIGLFVWD----- 228

Query: 248 EIFAKGQYEMLQK---MRCLGFPVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGL 302
             +  G  +M+Q+   ++ LGF  N+ V   +    H   + + E    R+ LP+  DG+
Sbjct: 229 --WPDGPADMVQRLAGLQTLGF--NDSVAYTHPLENHAQAADWRE-HWYRNPLPFATDGV 283

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           + +  +    ++   +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV 
Sbjct: 284 IMRQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRSGKITPVLELTPVR 341

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           +            +D      ++G + R  + DIR GD + V  AG  IP++  ++   R
Sbjct: 342 L------------DDRTVSRISAGSLPRWEKLDIRPGDHIAVSLAGLTIPRLDGVV--SR 387

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDA 480
             +    S P       +    DL+           C      C +Q   RL     +  
Sbjct: 388 ATERAAMSVP------HASDYHDLS-----------CWQAAPGCESQFRARLVWLSGKKG 430

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
             + G+G    D   +S      I    D  TL         ++ NI G  + S   L D
Sbjct: 431 LALPGVGPGTWDKLIESG----HISGLLDWMTLNH------AELANIPGLAERSSAKLLD 480

Query: 541 SINKRRNISLERFIFSLGIRHVG 563
           S+   R    + ++ ++G+   G
Sbjct: 481 SLQTARERPFQTWLKAIGLPPAG 503


>gi|330980117|gb|EGH78327.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 561

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 128/574 (22%), Positives = 233/574 (40%), Gaps = 126/574 (21%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYD------ALKRRCDAIAHAFPDLARSE 69
           +A  E+++L+Q+I+  DD Y++     I D  YD      +L R C         LA S 
Sbjct: 32  KAHSEVTALQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSC---------LAVSS 82

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + PL    G +        H +P   + K+ +   ++ ++         K  N ++  
Sbjct: 83  PESNPLKTAVGPL-------PHPVPHTGVNKLADEGSVKDWL---------KGRNDLW-- 124

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ YEKG+ V A  RGDG  G+D ++  R I TIP+ L      +++  G
Sbjct: 125 IQPKVDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIETIPQQLPQAESPVLQ--G 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTS 247
           E+Y   +D +      +        N R+  +G+L R  ++P      +  FV       
Sbjct: 183 ELYWRLDDHIQSASGSV--------NARSKVAGLLARQTISPQQ-ADAIGLFVWD----- 228

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS-----------IRSTLP 296
             +  G  +M Q++  L         QA  F    +Y + +++            R+ LP
Sbjct: 229 --WPNGPADMAQRLAGL---------QAMGFEDSAAYTHPLQNYAQAARWREHWYRNPLP 277

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           +  DG++ +  +    ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV 
Sbjct: 278 FATDGVIMRQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVL 335

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVD 415
            L PV +            +D      ++G + R    DIR GD+V V  AG  IP++  
Sbjct: 336 ELTPVRL------------DDRTVSRISTGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDG 383

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLN---PKTGKL--VAAHRCTGGLACSAQQLE 470
           ++                     SR     +   P+      ++  + T G  C +Q   
Sbjct: 384 VV---------------------SRAAERADMIIPRADDFHELSCWQATPG--CESQFRA 420

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
           RL     +    + G+G    +   ++            I  L      +  ++ NI GF
Sbjct: 421 RLAWLSGKKGLALPGVGPGTWNTLIEN----------GQIIGLLDWMTLNHAELVNIPGF 470

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
            + S   L DS+   R    + ++ ++G+   G 
Sbjct: 471 AERSSAKLLDSLQTARERPFQTWLKAIGLPPTGG 504


>gi|311277433|ref|YP_003939664.1| DNA ligase (NAD(+)) [Enterobacter cloacae SCF1]
 gi|308746628|gb|ADO46380.1| DNA ligase (NAD(+)) [Enterobacter cloacae SCF1]
          Length = 556

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 140/622 (22%), Positives = 252/622 (40%), Gaps = 113/622 (18%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A +E+++L  +++   + Y++     + D  YD L  R       F     +E+     
Sbjct: 27  KAEQEMAALNAQLTRWSEAYWREGASAVSDEVYDQLSARLKQWQRCFSQERTAEE----A 82

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             IGG        V H +    + K+ +   L +++      W           ++PK+D
Sbjct: 83  PAIGG-------AVKHPVAHTGVRKMASKAALEQWMRTRQGLW-----------VQPKVD 124

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y +G+ V A  RGDG  GED +A  R I  IP+     +   + ++GE++  +
Sbjct: 125 GVAVTLVYRQGRLVRAISRGDGLKGEDWTAKARVIAAIPQQTQGPLANSV-LQGEIFWRQ 183

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           ++   +   M  +      N R  A+G + R +  D   +L  F+         +  G  
Sbjct: 184 DNH--IQQRMGGM------NARAKAAGAMMRQSDGDALAHLGLFIWE-------WPDGPQ 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST-----LPYDIDGLVYKVDEFS 310
            M +++  L      G R    +   V+   +++  R+      LP+  DG++ +    +
Sbjct: 229 TMPERLAAL---AAAGFRLTADWTLPVNTIGDVEQRRAAWFSAPLPFATDGIIIR----A 281

Query: 311 LQKQLGERARSPR--WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            Q+  GER       W+++ K+A      ++  I   +GRTG +  +A LEPV +    +
Sbjct: 282 AQEPAGERWLPGEGGWVVAWKYAPASQVAQVKTIRFAVGRTGKVAVIAALEPVVLDDKRV 341

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
              +L +    + L           DI  GD++LV  AG+ IP+V  ++   R  D Q  
Sbjct: 342 QRVSLGSVARWRAL-----------DIAPGDQILVSLAGQGIPRVDGVVW--RGVDRQKP 388

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           S P               P+   L   +       C AQ + RL    SR A +IEG+G 
Sbjct: 389 SPPV--------------PRYNALTCLYASP---ECMAQFIARLVWLSSRQALDIEGVGN 431

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                 +++    F       +F+     Q +  +++   G        L+   N  R  
Sbjct: 432 AGWQILYQAHH--FE-----HLFSW---LQLTPAQLQATPGLSPARGLTLWHRFNLAREQ 481

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYY--LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              R+I ++     GA +A++  K     S+Q   Q        +  DW +L   P +G+
Sbjct: 482 PFIRWIVAM-----GAPLAQAALKAAGDRSWQAMRQ-------RSEADWRTL---PGMGE 526

Query: 607 IIAQAIVEFYQNPRNICAVEAL 628
             A+ IV +  +P+    VEAL
Sbjct: 527 EKARQIVSWLHHPQ----VEAL 544


>gi|331014918|gb|EGH94974.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 561

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 128/560 (22%), Positives = 227/560 (40%), Gaps = 92/560 (16%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +A  E+++L+Q+I+  DD Y++     I D  YD  +++ +     F   A S   
Sbjct: 28  WSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCF---AVSTPQ 84

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             PL    G +        H +P   + K+ + +D++ ++      W           ++
Sbjct: 85  ANPLKTATGPL-------AHPVPHTGVNKLADEKDVKAWLKGRTDLW-----------IQ 126

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +T+ Y +G+   A  RGDG  G+D +   R I  IP+   L  P+ + ++GE+
Sbjct: 127 PKVDGVAVTLVYHEGRLAQAISRGDGTQGQDWTPQARLIKAIPQ--QLPQPDSLILQGEL 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEI 249
           Y    D +      +        N R+  +G+L R  ++P      +  FV         
Sbjct: 185 YWRLTDHVQAASGSV--------NARSKVAGMLARQTISPQQ-ADAIGLFVWD------- 228

Query: 250 FAKGQYEMLQK---MRCLGFPVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +  G  +M Q+   ++ LGF  N+ V   +    H   + + E    R+ LP+  DG++ 
Sbjct: 229 WPDGPADMAQRLAGLQALGF--NHSVAYTHPLENHAQAADWRE-HWYRNPLPFATDGVIM 285

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           +  +    ++   +A +P W+ + K    QA   +  +   IGRTG + PV  L PV + 
Sbjct: 286 RQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRL- 342

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
                      +D      ++G + R  + DIR GD + V  AG  IP++  ++   R  
Sbjct: 343 -----------DDRTVSRISAGSLSRWEKLDIRPGDHIAVSLAGLTIPRLDGVV--SRAA 389

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +    S P            D +    +L       G   C +Q   RL     +    +
Sbjct: 390 ERAEMSVPH---------ASDYH----ELSCWQAAPG---CESQFRARLVWLSGKKGLAL 433

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G+G    D   +S      I    D  TL         ++ NI G  + S   L DS+ 
Sbjct: 434 PGVGPGTWDKLIESG----HISGLLDWMTLNH------AELANIPGLAERSSDKLLDSLQ 483

Query: 544 KRRNISLERFIFSLGIRHVG 563
             R    + ++ ++G+   G
Sbjct: 484 TARERPFQTWLKAIGLPPAG 503


>gi|260599943|ref|YP_003212514.1| NAD-dependent DNA ligase LigB [Cronobacter turicensis z3032]
 gi|260219120|emb|CBA34475.1| DNA ligase B [Cronobacter turicensis z3032]
          Length = 550

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 131/625 (20%), Positives = 252/625 (40%), Gaps = 107/625 (17%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQAR+E+++LE +++  D+ Y+   +  + D+ YD +++R +     F     S  P   
Sbjct: 16  EQARQEVAALESQLARWDEAYWLRGENNVSDAVYDGMRQRLNVWKTCFSLATVSAAPP-- 73

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
                    ++  +  H +    ++K+ +   L +++      W           ++PK+
Sbjct: 74  --------PVAAGRTHHPVAHTGVQKLKDAASLSQWMHGKTDLW-----------VQPKV 114

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ Y KG+      RGDG  GED +A  R IP IP  +   + + + ++GE+++ 
Sbjct: 115 DGVAVSLVYRKGELRQVISRGDGLQGEDWTARARHIPAIPLQVKGELADSV-LQGELFLR 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           +       D  I        N R   +G + R   + +   L+ F+         +  G 
Sbjct: 174 REGHHQQQDGGI--------NARAQVAGAMMRNTASPLLNDLDLFIWA-------WPDGP 218

Query: 255 YEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            EM  ++  L   GFP+     Q  +    V+ + + +  R  LP+  DG+V +      
Sbjct: 219 KEMETRLTILAQGGFPLARAWSQPVSSVADVTRWRK-QWFREPLPFVTDGVVIREAREPP 277

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            K    R     W+ + K+   +  T +  +   +GRTG ++ VA+LEP+ +    ++  
Sbjct: 278 GKSW--RPGEGSWVAAWKYPPVKQVTEVNALRFAVGRTGKISVVAQLEPITLDDKQVSKV 335

Query: 372 TLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ++            G + R  + D+  GD V V  AG+ IP++ D +V      ++P   
Sbjct: 336 SI------------GSLTRWEKLDLAEGDEVEVSLAGQGIPRL-DAVVWRPAKRSKP--- 379

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-- 488
                           P   +  A        AC  Q + RL     +  F++ G+G+  
Sbjct: 380 ---------------APPAARFDALSCLFATGACEEQFISRLVWLSGKPVFDLAGMGEAT 424

Query: 489 -QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +QL    + E           +F+       S   ++   GF     T L+   N  R 
Sbjct: 425 WRQLSSRHRFEH----------LFSWL---ALSVDALKQTPGFSAPRATRLWHQFNLTRQ 471

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI-NNIIAHNNDDWLSLIRVPLVGD 606
           +  +R++ +LG           L     ++Q  A +  + +   +   W +L   P VG 
Sbjct: 472 LPFQRWVKALG-----------LPLPARAWQALADDTWHQLQMRDERSWQTL---PGVGA 517

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE 631
             A+ +V +  +P ++ A+   L E
Sbjct: 518 ERARQLVNYIHHP-DVAALAQWLVE 541


>gi|330967268|gb|EGH67528.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 560

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 128/569 (22%), Positives = 229/569 (40%), Gaps = 111/569 (19%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +A  E+++L+Q+I+  DD Y++     I D  YD  +++ +     F   A S   
Sbjct: 28  WSHAKASSEITALQQQIAKWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCF---AVSTPQ 84

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             PL    G +        H +P   + K+ + +D++ ++      W           ++
Sbjct: 85  ANPLKTATGPL-------AHPVPHTGVNKLADEKDVKAWLKGRTDLW-----------IQ 126

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +T+ Y++G+ V A  RGDG  G+D +   + I  IP+   L  P  + ++GE+
Sbjct: 127 PKVDGVAVTLVYDEGRLVQAISRGDGTKGQDWTPQAQLIKAIPQ--QLPQPGSLILQGEL 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEI 249
           Y    D +      +        N R+  +G+L R  ++P      +  FV         
Sbjct: 185 YWRLTDHVQAASGSV--------NARSKVAGMLARQSISPQQ-ADAIGLFVWD------- 228

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS-----------IRSTLPYD 298
           +  G  +M Q++  L         QA  F+  V+Y + +++            R+ LP+ 
Sbjct: 229 WPDGPADMAQRLAGL---------QALGFNDSVAYTHPLENQAQAADWREHWYRNPLPFA 279

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DG++ +  +    ++   +A +P W+ + K    QA   +  +   IGR+G +TPV  L
Sbjct: 280 TDGVIMRQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRSGKITPVLEL 337

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417
            PV +            +D      ++G + R  + DIR GD + V  AG  IP++  ++
Sbjct: 338 TPVRL------------DDRTVSRISAGSLPRWEKLDIRPGDHIAVSLAGLTIPRLDGVV 385

Query: 418 --VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKH 474
               ER   + P S              DL+           C      C +Q   RL  
Sbjct: 386 SRATERAAMSVPHS-----------DYHDLS-----------CWQAAPGCESQFRARLVW 423

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
              +    + G+G    D   +S      I    D  TL         ++ NI G  + S
Sbjct: 424 LSGKKGLALPGVGPGTWDKLIESG----HISGLLDWMTLNH------AELANIPGLAERS 473

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVG 563
              L DS+   R    + ++ ++G+   G
Sbjct: 474 SAKLLDSLQTARERPFQTWLKAIGLPPAG 502


>gi|325271326|ref|ZP_08137858.1| NAD-dependent DNA ligase LigB [Pseudomonas sp. TJI-51]
 gi|324103542|gb|EGC00857.1| NAD-dependent DNA ligase LigB [Pseudomonas sp. TJI-51]
          Length = 562

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 136/631 (21%), Positives = 251/631 (39%), Gaps = 113/631 (17%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   E++ L + +   DD Y++    ++ D  YD  ++R   +   F  LA       P
Sbjct: 29  QQVASEVAQLRKTLGSWDDHYHRQGIALVPDELYDQSRQRLAQLQQCF-GLAGGP---AP 84

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           L   GG        V H IP   ++K+ +   +++++      W           ++PK+
Sbjct: 85  LANAGG-------PVPHPIPHTGIDKLHDRHAVQRWLAGKADVW-----------VQPKV 126

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ Y +G+ V    RG+G  G D S  I  + +I R L   +   ++++GE+Y+ 
Sbjct: 127 DGVAVSLIYREGRLVQLISRGNGAQGHDWSRHIPQLGSITRQLPQAMD--LQLQGELYLR 184

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGIL-RRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            N  +    +  A G    A  R+  +G+L R+   ++    +  FV    +  E     
Sbjct: 185 LNAHV----QAQAGG----AKARDTVAGLLARKRLSSEQGEAVGLFVWDWPQGPEQ---- 232

Query: 254 QYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           Q E L ++  LGF  +     A NT      +        + LP+  DG+V +       
Sbjct: 233 QAERLAQLAQLGFADSQRYSVAINTLDEAAQWREHW--YHAALPFASDGVVLRQGSRPPA 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++   +A++P W+ + K+   QA   + D+  ++GRTG +TPV  L PV +    +T  +
Sbjct: 291 ERW--QAKAPYWLAAWKYPYMQALAEVRDVRFRVGRTGRVTPVLHLLPVTLDNRRVTQVS 348

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQPFSF 430
           + +      L           DIR GD+V V  AG  IP++  ++    ER P A P   
Sbjct: 349 MGSLARWHSL-----------DIRPGDQVAVSLAGLTIPRLEQVVHRAVERVPVAAP--- 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
                                   AH C    + C  Q + RL     +    +      
Sbjct: 395 ------------------AADQYHAHSCWQASVGCEEQFIARLAWLSGKHGLAL------ 430

Query: 490 QLDFFFKSEDPAFSIRIPADIFT-LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                 ++    +   + A + T L    Q   T++  + G  + +   L  S N  R  
Sbjct: 431 -----LRTGPGTWRRLVAAGLATSLTDWLQLDATRLSEVAGISERTAAQLRSSFNDARTR 485

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S +++     +R +GA +   +            +   + A   D W +L   P +G+  
Sbjct: 486 SFDQW-----LRGLGAPLPNGM--------QITGDWQALAARTADTWQAL---PGIGEKR 529

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
           A+ +V+F+          A ++ ++  +G H
Sbjct: 530 ARQLVDFF--------AAAEVRAIATQLGEH 552


>gi|308188670|ref|YP_003932801.1| DNA ligase [Pantoea vagans C9-1]
 gi|308059180|gb|ADO11352.1| DNA ligase [Pantoea vagans C9-1]
          Length = 583

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 137/631 (21%), Positives = 252/631 (39%), Gaps = 111/631 (17%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A +E+  L+Q++ + DD YY+  +  + D++YDAL++R     H F     +  P  P 
Sbjct: 32  RATEEIRRLQQQLQHWDDAYYRQGQSPVADADYDALQQRLIQWQHCFSPYQPAYAPQLPG 91

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           N        SL  V H+           ++ +R  +   Y    ++D       ++PK+D
Sbjct: 92  N------GTSLHPVAHT----------GVKKMRDKLALAYWMQGRRD-----LWVQPKVD 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ Y +G+ V    RGDG  GE+  A    IP IP  +   + E++ ++GE+++  
Sbjct: 131 GIAVSLVYRQGRLVSLLSRGDGLRGEEWLAKAAWIPAIPLNIETRLDEVV-LQGELFLPM 189

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
            D    + + I  G+    N R   +G +       +   L+ F+         +  G  
Sbjct: 190 TD----HQQAIDGGK----NARTQVAGAMMSKQRVPLLNSLDVFIWA-------WPDGPA 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFS 310
            M +++  L      G+  A  +   V    E+ + R     + LP+  DG+V       
Sbjct: 235 TMTERLEQLS---RWGLGIAAKWSHSVKDEEEVAAWRDRWFHAALPFVTDGVVVHQSLRP 291

Query: 311 LQKQL--GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             K    GE      W ++ K+   + S  +L +D  +GRTG +  V  L+PV +     
Sbjct: 292 AGKNWLPGEGT----WAVAWKYQPPEVSAEVLSVDFPVGRTGKIAAVLNLQPVQL----- 342

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER-HPDA 425
                 ++  ++ ++          DI  GD + +  AG+ IP++  +I  V ER +P  
Sbjct: 343 ------DDKTVRRVNVGSLRRWQESDIVAGDVITLSLAGQGIPRLERVIWRVAERDYP-- 394

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIE 484
           QP     + P+                     C T    C  Q L +L+    +   NI 
Sbjct: 395 QPPDASHYTPLS--------------------CYTFSAECQKQLLAKLRWLSQKTVLNIP 434

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+ +       ++     S+       TL   Q  + T      GF     + L+   N 
Sbjct: 435 GVERSTWLRLLETG----SMTHLFGWLTLTPEQIAAAT------GFSPERASQLWHRFNL 484

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R     R++ +LGI  +  +  +SL           Q+  +++  +   W +L   P V
Sbjct: 485 TRQQPFRRWVDALGI-SLPRKALKSLPD---------QQWESLMQRDVTGWQAL---PGV 531

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           G  +A+ +V  + + R    +  L ++  PS
Sbjct: 532 GAALAKRLVAQFHDARVQALIAFLQQQGIPS 562


>gi|66048020|ref|YP_237861.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae
           B728a]
 gi|81307820|sp|Q4ZLZ9|LIGB_PSEU2 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|63258727|gb|AAY39823.1| DNA ligase (NAD+) [Pseudomonas syringae pv. syringae B728a]
          Length = 561

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 119/567 (20%), Positives = 229/567 (40%), Gaps = 112/567 (19%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR E+++L+Q+I+  DD Y++     I D  YD  +++ +     F       DP    
Sbjct: 32  KARSEVTALQQQIAEWDDSYHRQGISQIADELYDQARQKLNLWRSCFAVSTPESDP---- 87

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
                 +  ++  + H +P   + K+ +   ++ ++         K  N ++  ++PK+D
Sbjct: 88  ------LKTAVGPLPHPVPHTGVNKLADEGSVKGWL---------KGRNDLW--IQPKVD 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ YEKG+ V A  RGDG  G+D ++  R I  I + L      I++  GE+Y   
Sbjct: 131 GVAVTLVYEKGRLVQAISRGDGRKGQDWTSQARLIKAIAQQLPQAESTILQ--GELYWRL 188

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253
           +D +      +        N R+  +G+L R  ++P      +  FV         +  G
Sbjct: 189 DDHIQAASGSV--------NARSKVAGLLARQTISPQQ-ADAIGLFVWD-------WPNG 232

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS-----------IRSTLPYDIDGL 302
             +M Q++  L         QA  F    +Y + +++            R+ LP+  DG+
Sbjct: 233 PADMAQRLAGL---------QAMGFEDSAAYTHPLENYVQAARWREHWYRNPLPFATDGV 283

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           + +  +    ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV 
Sbjct: 284 ILRQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVR 341

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +    ++  +  +    + L           DIR GD++ V  AG  IP++  ++     
Sbjct: 342 LDDRTVSRISTGSLQRWQTL-----------DIRPGDQIAVSLAGLTIPRLDGVV----- 385

Query: 423 PDAQPFSFPSFCPICQSRVVRDLN---PKTGKL--VAAHRCTGGLACSAQQLERLKHFVS 477
                           SR     +   P+      ++  + T G  C +Q   RL     
Sbjct: 386 ----------------SRAAERADMIIPRADDFHELSCWQATPG--CESQFRARLAWLSG 427

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           +    + G+G    +    +            I  L      +  ++ NI GF + S   
Sbjct: 428 KKGLALPGVGPGTWNTLIDN----------GQIMGLLDWMTLNHAELVNIPGFAERSSAK 477

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGA 564
           L DS+   R    + ++ ++G+   G 
Sbjct: 478 LLDSLQTARERPFQTWLKAIGLPPTGG 504


>gi|156936180|ref|YP_001440096.1| NAD-dependent DNA ligase LigB [Cronobacter sakazakii ATCC BAA-894]
 gi|166226363|sp|A7MQB5|LIGB_ENTS8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|156534434|gb|ABU79260.1| hypothetical protein ESA_04079 [Cronobacter sakazakii ATCC BAA-894]
          Length = 561

 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 115/554 (20%), Positives = 228/554 (41%), Gaps = 95/554 (17%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +QA++E+++LE +++  D+ Y+ + +  + D+ YD++++R  A    F     ++ P   
Sbjct: 27  QQAQQEVAALENQLTRWDEAYWLHGENKVSDAVYDSMRQRLRAWQTCFALPVFNDAP--- 83

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
                  + L+  +  H +    ++K+ +   L +++      W           ++PK+
Sbjct: 84  -------VALAAGRTRHPVAHTGVQKLNDATSLSQWMHGKTDLW-----------VQPKV 125

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ Y KGK      RGDG  GED +A  R IP IP  ++  + + + ++GE+++ 
Sbjct: 126 DGVAVSLVYRKGKLQQVISRGDGERGEDWTARARHIPAIPLQVTGELADSV-LQGELFLR 184

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           +       D  I        N R   +G + R   + +   L+ F+         +  G 
Sbjct: 185 QTGHRQQQDGGI--------NARGQVAGAMMRSTVSSVLNDLDLFIWA-------WPDGP 229

Query: 255 YEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKV 306
             M  ++  L   GFP+      A  +   V   +++  +R       LP+  DG+V + 
Sbjct: 230 KAMEARLSTLAEGGFPL------AQAWSKPVHSVSDVARLREQWFSEPLPFVTDGVVIRE 283

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
                 K    R     W+++ K+   +  T +  +   +GRTG ++ VA+LEPV +   
Sbjct: 284 GREPPGKSW--RPGEGSWVVAWKYPPAKQITEIKALRFAVGRTGKISVVAQLEPVTLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++  ++            G + R  + D+  GD+V +  AG+ IP++  +I        
Sbjct: 342 KVSKVSI------------GSLARWEKLDLAEGDQVEISLAGQGIPRLDAVI-------- 381

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                  + P  + + V    P T +        G   C  Q + RL     +  F++ G
Sbjct: 382 -------WRPTQRIKPV----PPTARFDTLSCLYGTTGCEEQFISRLVWLSGKHVFDLAG 430

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G+        SE   F       +F+       S   ++   GF       L+   N  
Sbjct: 431 MGEATWRQL--SEHHHFE-----HLFSW---LALSVDALKQTPGFSAQRAAQLWHQFNLT 480

Query: 546 RNISLERFIFSLGI 559
           R    +R++ +LG+
Sbjct: 481 RQQPFQRWVKALGL 494


>gi|320326326|gb|EFW82379.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 561

 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 120/557 (21%), Positives = 227/557 (40%), Gaps = 92/557 (16%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR E+++L+Q+++  +D Y++     I D  YD  +++ +     F       DP    
Sbjct: 32  KARSEVTNLQQQMAAWNDSYHRQGISHIPDELYDQARQKLNLWRSCFAVPPPEADP---- 87

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
                 +  ++  + H +    + K+ +   ++ ++      W           ++PK+D
Sbjct: 88  ------LKTAVGPLPHPVAHTGVNKLADESSVKDWLEGRNDLW-----------IQPKVD 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ YE G+ V A  RGDG  G+D ++  R I TIP+   L  PE   ++GE+Y   
Sbjct: 131 GVAVTLVYENGQLVQAISRGDGRKGQDWTSQARLIKTIPQ--HLPQPESAILQGELYWRL 188

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTD---ITRYLNFFVHGLGKTSEIF 250
           +D +      +        N R+  +G+L R  ++P     I  ++  + +G G  ++  
Sbjct: 189 DDHIQSASGSV--------NARSKVAGLLARQTISPQQADAIGLFVWDWPNGPGDMAQRL 240

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A  Q    +       P+ N  + A        +Y      R+ LP+  DG++ +  +  
Sbjct: 241 AGLQAMGFEDSAAYSHPLENYAKAARWRE---HWY------RNPLPFATDGVIMRQGQRP 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             ++   +A +P W+ + K    QA   +  +   +GR+G +TPV  L PV +       
Sbjct: 292 PMQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRL------- 342

Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
                +D      ++G + R    DIR GD+V V  AG  IP++  +I            
Sbjct: 343 -----DDRTVSRISTGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRA--------- 388

Query: 430 FPSFCPICQSRVVRDLNPKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                    +  V  + P+      ++  + T G  C +Q   RL     +    + G+G
Sbjct: 389 ---------AERVEMIIPQADDFHELSCWQATPG--CESQFRARLIWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               D   ++      I    D  TL         ++ NI GF + S   L  S+   R 
Sbjct: 438 PGTWDKLIENGQ----IESLLDWMTLNH------AELANIPGFAERSSAKLLASLQTARE 487

Query: 548 ISLERFIFSLGIRHVGA 564
              + ++ ++G+   G+
Sbjct: 488 RPFQTWLKAIGLPPTGS 504


>gi|293413081|ref|ZP_06655749.1| DNA ligase [Escherichia coli B354]
 gi|291468728|gb|EFF11221.1| DNA ligase [Escherichia coli B354]
          Length = 561

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 131/593 (22%), Positives = 235/593 (39%), Gaps = 111/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHRDA 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129
              PLN         +  V H+              +RK   +I    W ++  +     
Sbjct: 84  MMPPLN------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++G
Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L+ FV       ++
Sbjct: 181 EIFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLDVFVWAWPDGPQL 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
                 + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 233 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKAKLPFVTDGVVV 282

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +  F ++G+G+       ++   +  FS       F L   Q      ++N  G      
Sbjct: 424 KQVFGLDGIGEAGWRALHQTHRFEHIFS------WFLLTPEQ------LQNTPGIAKSKS 471

Query: 536 TNLYDSINKRRNISLERFIFSLGIR----HVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++  LS + F Q++
Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRVALNASDERSWSQLLLSTEQFWQQL 524


>gi|323975134|gb|EGB70239.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli TW10509]
          Length = 560

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 127/588 (21%), Positives = 238/588 (40%), Gaps = 102/588 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F + +R   
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNESR--- 80

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +  +  + G        V H +    + K+ +   LR ++         ++ N ++  +
Sbjct: 81  -DAMMPPLAG-------TVMHPVAHTGVRKLADKNALRLWM---------REHNDLW--V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  IP++P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVPQTVSGPLVNST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R+  +G+L R   +D    L  FV      +++ 
Sbjct: 181 IFLKREGH--IQQQMGGI------NARSKVAGLLMRQGNSDTLNSLGVFVWAWPDGTQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                + LQ++   GF +     R  N    +    NE    ++ LP+  DG+V +    
Sbjct: 233 T----DRLQQLTTAGFTLTQMYTRAVNNADEVERIRNEW--WKAKLPFVTDGVVVRA--- 283

Query: 310 SLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
              K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 284 --AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIV--NERHP 423
            +    +            G V R    DI  GD++LV  AG+ IP++ +++    ER  
Sbjct: 342 KVQRVNV------------GSVRRWQEWDIAPGDKILVSLAGQGIPRIDNVVWRGTERTK 389

Query: 424 DAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              P + F S      S V                      C  Q + RL    S+    
Sbjct: 390 PTPPENRFNSLTCYFASDV----------------------CREQFISRLVWLGSKQVLG 427

Query: 483 IEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           ++G+G+       ++   +  FS  +             +  +++N  G      T L+ 
Sbjct: 428 LDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSTQLWH 475

Query: 541 SINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 476 QFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|330972946|gb|EGH73012.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 561

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 117/559 (20%), Positives = 227/559 (40%), Gaps = 96/559 (17%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR E ++L+Q+I+  DD Y++     I D  YD  +++ +     F       DP    
Sbjct: 32  KARSEATALQQQIAEWDDSYHRQGISQIADELYDQARQKLNLWRSCFAVSIPESDP---- 87

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
                 +  ++  + H +P   + K+ +   ++ ++         K  N ++  ++PK+D
Sbjct: 88  ------LKTAVGPLPHPVPHTGVNKLADEGSVKDWL---------KGRNDLW--IQPKVD 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ YEKG+ V A  RGDG  G+D ++  R I  I + L      I++  GE+Y   
Sbjct: 131 GVAVTLVYEKGRLVQAISRGDGRKGQDWTSQARLIKAIAQQLPQAESTILQ--GELYWRL 188

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253
           +D +      +        N R+  +G+L R  ++P      +  FV         +  G
Sbjct: 189 DDHIQAASGSV--------NARSKVAGLLARQTISPQQAD-AIGLFVWD-------WPNG 232

Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +M Q+   ++ +GF  +         +   + + E    R+ LP+  DG++ +  +  
Sbjct: 233 PADMAQRLAGLQAMGFEDSAAYTHPLENYAQAARWRE-HWYRNPLPFATDGVIMRQGQRP 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    ++ 
Sbjct: 292 PAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRTVSR 349

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +  +    + L           DIR GD++ V  AG  IP++  ++             
Sbjct: 350 ISTGSLQRWQTL-----------DIRPGDQIAVSLAGLTIPRLDGVV------------- 385

Query: 431 PSFCPICQSRVVRDLN---PKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                   SR     +   P+      ++  + T G  C +Q   RL     +    + G
Sbjct: 386 --------SRTAERADMIIPRADDFHELSCWQATPG--CESQFRARLAWLSGKKGLALPG 435

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G    +    +            I  L      +  ++ NI GF + S   L DS+   
Sbjct: 436 VGPGTWNTLIDN----------GQIMGLLDWMTLNHAELVNIPGFAERSSAKLLDSLQTA 485

Query: 546 RNISLERFIFSLGIRHVGA 564
           R    + ++ ++G+   G 
Sbjct: 486 RERPFQTWLKAIGLPPTGG 504


>gi|323965913|gb|EGB61361.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli M863]
          Length = 562

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 127/592 (21%), Positives = 241/592 (40%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F + +R   
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNESR--- 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +  +  + G        V H +    + K+ +   LR ++         ++ N ++  +
Sbjct: 83  -DAMMPPLAG-------TVMHPVAHTGVRKLADKNALRLWM---------REHNDLW--V 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  IP++P+ +S  +     ++GE
Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVPQTVSGPLVNST-LQGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R+  +G+L R   +D    L  FV      +++ 
Sbjct: 183 IFLKREGH--IQQQMGGI------NARSKVAGLLMRQGNSDTLNSLGVFVWAWPDGTQLM 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
                + LQ++   GF +        T+   V+  +E++ IR     + LP+  DG+V +
Sbjct: 235 T----DRLQQLTTAGFTLT------QTYTRAVNNADEVERIRNEWWKAKLPFVTDGVVVR 284

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 285 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVM 339

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIV--N 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ +++    
Sbjct: 340 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDNVVWRGT 387

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 388 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 425

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 426 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 473

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 474 QLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|332141273|ref|YP_004427011.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551295|gb|AEA98013.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 171

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 95/162 (58%), Gaps = 5/162 (3%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++EQARK+++ L   ++ ++  YY    P I D+ YD   +   A+   +P L   + PN
Sbjct: 4   TLEQARKKVAELRNTLNEYNYQYYVLDDPSIPDAVYDRDMQSLIALEKQYPSL---QSPN 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+GGE   +  +VTH +P LSL+  ++ E L  F  R+    + KD +S+ F+ EP
Sbjct: 61  SPSQKVGGEALSAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKD--RLKDTSSLHFSCEP 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
           K+DG  ++I YE G+ V AA RGDG  GE+++A +R I  +P
Sbjct: 119 KLDGLAVSILYENGELVRAATRGDGQVGENITANVRTISNVP 160


>gi|330955026|gb|EGH55286.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae Cit 7]
          Length = 561

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 119/565 (21%), Positives = 229/565 (40%), Gaps = 100/565 (17%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +AR E+++L+Q+++  DD Y++     I D  YD  +++       F       DP
Sbjct: 28  WSAAKARSEVTNLQQQMAAWDDSYHRQGISPIPDELYDQARQKLSLWRSCFAVSTPEADP 87

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                     +  ++  + H +    + K+ +   ++ ++         K  N ++  ++
Sbjct: 88  ----------LKTAVGPLPHPVAHTGVNKLADESSVKDWL---------KGRNDLW--IQ 126

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +T+ YE G+ V A  RGDG  G+D ++  R I  IP+ L      I++  GE+
Sbjct: 127 PKVDGVAVTLVYENGQLVQAISRGDGRKGQDWTSQARLIKAIPQQLPQADSAILQ--GEL 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTD---ITRYLNFFVHGLGKT 246
           Y   +D +      +        N R+  +G+L R  ++P     I  ++  + +G G  
Sbjct: 185 YWRLDDHIQSASGSV--------NARSKVAGLLARQTISPQQADAIGLFVWDWPNGPGDM 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           ++  A  Q    +       P+ N  + A        +Y      R+ LP+  DG++ + 
Sbjct: 237 AQRLAGLQAMGFEDSAAYSHPLENYAKAARWRE---HWY------RNPLPFATDGVIMRQ 287

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            +    ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +   
Sbjct: 288 GQRPPAQRW--QASAPYWIAAWKHPYAQALAEVCKVNFKIGRSGRITPVLELTPVRL--- 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERH- 422
                    +D      ++G + R    DIR G ++ V  AG  IP++  ++    ER  
Sbjct: 343 ---------DDRTVSRISTGSLQRWQTLDIRPGAQIAVSLAGLTIPRLDGVVTRAAERAD 393

Query: 423 ---PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
              P A+ F                        ++  + T G  C +Q   RL     + 
Sbjct: 394 IIIPRAEDF----------------------HELSCWQATPG--CESQFRARLAWLSGKK 429

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
              + G+G    +   ++            I  L      +  ++ NI GF + S   L 
Sbjct: 430 GLALPGVGPGTWNTLIEN----------GQIMGLLDWMTLNHAELANIPGFAERSSAKLL 479

Query: 540 DSINKRRNISLERFIFSLGIRHVGA 564
           +S+   R    + ++ ++G+   G 
Sbjct: 480 NSLQTARERPFQTWLKAIGLPPTGG 504


>gi|307128799|ref|YP_003880815.1| DNA ligase [Dickeya dadantii 3937]
 gi|306526328|gb|ADM96258.1| DNA ligase [Dickeya dadantii 3937]
          Length = 561

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 183/416 (43%), Gaps = 66/416 (15%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A +E++ L Q+++  D+ YY+  +  + D  YD L++        F        
Sbjct: 26  AWSSTRAEQEITQLGQQLTQWDNAYYEQGQSPVDDQVYDQLRQTLATWQVCF-------- 77

Query: 71  PNGPLNKIGGEMNLSL---FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
                    G   +SL    +  H +    L+K+    +L+++I +    W         
Sbjct: 78  -----QADAGRFAISLPTTGRRQHPVAHTGLKKLSEPTELKQWIAQHNDLW--------- 123

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PKIDG  +T+ YE+GK V A  RG+G  GED +  +R + ++P+ LS      +  
Sbjct: 124 --VQPKIDGVAVTLVYEQGKLVAAISRGNGRQGEDWTDKVRQMNSVPQQLSAMSGRQV-F 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+Y+   D        I        N R   +G +RR  P+ +   +  FV       
Sbjct: 181 QGELYLQVTDHRQQQVGGI--------NARAQVAGEMRRKQPSPLLSRIGVFVWA----- 227

Query: 248 EIFAKGQYEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             +  G  +M   L K+R LGF +     Q  +     + + E +  R+ LP+  DG+V 
Sbjct: 228 --WPDGPADMPARLAKLRELGFGLTADYTQPVSSLEAAAQWRE-RWYRAPLPFVTDGVVV 284

Query: 305 KVDEFSLQKQLGERAR-SP-RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           +      Q+  G   + +P  W ++ K+      T +  +D+++GRTG +T V +L+PV 
Sbjct: 285 R----QAQEPAGRYWQDTPAEWAVAWKYPLVNRVTEVTGVDVEVGRTGRMTVVLQLQPVI 340

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417
           +    ++   L            G V R  + D+  GDRV +  AG  IP++  ++
Sbjct: 341 LDDKTVSRVNL------------GSVSRWRQWDVLPGDRVSISLAGLGIPRLDAVV 384


>gi|152972501|ref|YP_001337647.1| NAD-dependent DNA ligase LigB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|166226364|sp|A6TFP6|LIGB_KLEP7 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|150957350|gb|ABR79380.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 564

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 130/635 (20%), Positives = 253/635 (39%), Gaps = 114/635 (17%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + + R+E S L Q+I    + Y++     + D  YD L  R       FP     +D   
Sbjct: 32  LARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPEDD--- 88

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
                  ++        H +    + K+ + + + +++      W           ++PK
Sbjct: 89  -------DLPPPTGDARHPVAHTGVRKLADEDSVARWMKNKSDLW-----------IQPK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y +G+ V A  RGDG  GE  +A  R IP + +V++  + + + ++GE+++
Sbjct: 131 VDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELADSV-LQGELFL 189

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            ++  +      +        N R   +G++ R +       L+ F+         +  G
Sbjct: 190 RRDGHVQQQTGGM--------NARAKVAGLMMRADAAAALSQLDVFIWA-------WPDG 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-----KSIRSTLPYDIDGLVYKVDE 308
             +M ++ + L      G + +  +   VS   ++     +  RS LP+  DG++ +   
Sbjct: 235 PSDMRRRQQLL---AQAGFKYSGQYTHPVSRIEQVAQWRQRWYRSPLPFVSDGVIVREG- 290

Query: 309 FSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
               ++   R  SP    W+ + K+       ++  I   IGR+G L  VA LEP  +  
Sbjct: 291 ----REPPGRVWSPGKGEWLAAWKYPPASRVMQVRAIRFSIGRSGRLNVVAELEPQRLDD 346

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH- 422
             +    + +    + LD           I VGD++ +  AG+ IP+V  ++    ERH 
Sbjct: 347 KRVQRVNVGSVSRWQMLD-----------IGVGDQLQISLAGQGIPRVDAVVWRTAERHK 395

Query: 423 PDAQPFSFPSF-CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
           P   P  F +  C            P+               CS Q L RL    S+ A 
Sbjct: 396 PTPPPAKFNALTCYFA--------TPE---------------CSEQFLSRLIWLSSKSAL 432

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           N++G+G + L    + ++P         IF+       +  +++ + G       +L+  
Sbjct: 433 NVDGVG-ENLWRVIQQQNPM------THIFSW---LALTVEQLQAVPGISAARGQHLWHQ 482

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
            +  R     R++ ++GI      +A+      L  +N+    + + A +   W +L   
Sbjct: 483 FDLVRKRPFIRWVLAMGIPVPQGALAQ------LESENW----HLLAAKSEAQWRTL--- 529

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
           P VG+I A+ +V F  +P  +   + L  +  P  
Sbjct: 530 PGVGEIRARQLVAFLHHPDVVALAQWLSGQRIPGF 564


>gi|82913524|ref|XP_728678.1| NAD-dependent DNA ligase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485151|gb|EAA20243.1| DNA ligase, NAD-dependent, putative [Plasmodium yoelii yoelii]
          Length = 354

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 11/187 (5%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R ++ + A  +E+ARK    L +EI +H+  YY+   P+I D+EYD L     AI   +P
Sbjct: 178 RTVVSVPAEVVEKARK----LREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYP 233

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +L     P+ P  ++G     +  +V H +P LSLE  ++ EDL  F  R+ +   +   
Sbjct: 234 ELV---TPDSPTQRVGAPPVEAFTEVRHEVPMLSLENAFSEEDLTAFDRRVRKELSR--- 287

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIP 182
           +++ +  EPK+DG  + + Y+ G  V AA RGDG  GEDV+  +RA+  IP R+   + P
Sbjct: 288 DTLEYVAEPKLDGLAVNLLYQDGVLVRAATRGDGEVGEDVTHNVRAVRAIPLRLKGEDFP 347

Query: 183 EIIEVRG 189
           +  E  G
Sbjct: 348 DRFEGAG 354


>gi|48374262|gb|AAT41954.1| putative DNA ligase [Fremyella diplosiphon Fd33]
          Length = 268

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 31/294 (10%)

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            PS CP+C   VVR+L        A  RC    +C+A     ++H+VSRDA +I+G+G++
Sbjct: 1   MPSNCPVCGQPVVRELGE------AVTRCVNA-SCAAILKGAIEHWVSRDALDIKGMGEK 53

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                 +  D    +   AD++ L         K+  +   G  S   L D+I + +N  
Sbjct: 54  ---LVHQLVDKGL-VHSVADLYDLTEE------KLYVLERMGQKSAQKLIDAIAQSKNQP 103

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ LGIRHVG+  A+ L + +   +   Q   + IA           +  +G  IA
Sbjct: 104 WSRVLYGLGIRHVGSVNAQLLTEKFSDVEKITQARQSDIAG----------IYGIGVEIA 153

Query: 610 QAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +++ +++Q   N   +  L    L+  + +      + + +  +K  V TGTL  ++R +
Sbjct: 154 ESVHQWFQIHANQTLISRLQAAGLQLANSAETSTITDSNPQFTDKTFVVTGTLPTLKRDE 213

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+  + + G  V+  +S+KTD ++VG++ GSKL KA+ LG+  + E Q L +L+
Sbjct: 214 AKALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLAKAEALGITQLTEAQLLQMLE 267


>gi|295095236|emb|CBK84326.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 556

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 145/641 (22%), Positives = 251/641 (39%), Gaps = 133/641 (20%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +A +E+++L+ +++  +D Y++     + D  YD L  R       F D    +D 
Sbjct: 23  WSPAKAGQEIAALKAQLTRWNDDYWKQGSSEVSDDVYDRLNARLKQWQRCFHDEPLHDD- 81

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
              L    G        V H      + K+ + + L +++      W           ++
Sbjct: 82  ---LPAASG-------TVKHPFAHTGVHKVESKQALSRWMATQQDLW-----------VQ 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +T+ Y+ GK V A  RGDG  GE+ +A  R IP IP+ L+  +   + ++GE+
Sbjct: 121 PKVDGVAVTLVYKNGKLVQAISRGDGLQGEEWTAQARMIPAIPQTLAGPLANSV-LQGEL 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           ++ +   +          R    N R   +G + R       +    F+         + 
Sbjct: 180 FLLREGHIQQ--------RMGGMNARAKVAGAMMRATDRAALKQTGIFIWA-------WP 224

Query: 252 KGQYEMLQKMRCL---GF--------PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
            G   M  ++  L   GF        PV N    A+      +++      +++LP+  D
Sbjct: 225 DGPKAMKARLSTLAEAGFTLTARYTVPVKNA---ADVEAQRTAWF------KASLPFATD 275

Query: 301 GLVYKVDEFSLQKQLGER--ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           G+V +       +  GER       W+++ K+      T +  I   +GRTG +T +A+L
Sbjct: 276 GIVVRASA----EPPGERWLPGEGSWVVAWKYLPVAQVTEVKAIHFTVGRTGRITAIAQL 331

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417
           EP+ +    +   +L            G V R  R DI  GD+VLV  AG+ IP++ +++
Sbjct: 332 EPLMLDDKRVQRVSL------------GSVNRWQRLDIAPGDQVLVSLAGQGIPRLDNVV 379

Query: 418 ---VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
              V+ R P                       P + +            C  Q   RL  
Sbjct: 380 WRNVDRRKP----------------------QPPSSRYNGLTCFYASPECMEQFFARLTW 417

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532
             SR A +IEG+G+      +++   +  FS         L + Q T+T  I    G   
Sbjct: 418 LSSRQALDIEGVGESGWRTLYQAHRFEHLFS------WLQLTQAQLTATAGISASHG--- 468

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
                L+   N  R     R+I ++GI      +ARS  K         +    +I  + 
Sbjct: 469 ---AALWHQFNLARERPFIRWITAMGI-----PLARSTLKAAGD-----RTWQALIQRSE 515

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
            +W  L   P VG   A+ IV +   P+    ++AL K ++
Sbjct: 516 AEWRML---PGVGQEKARQIVNWLHQPQ----IDALAKWLA 549


>gi|218707281|ref|YP_002414800.1| NAD-dependent DNA ligase LigB [Escherichia coli UMN026]
 gi|293407270|ref|ZP_06651194.1| DNA ligase B [Escherichia coli FVEC1412]
 gi|298383016|ref|ZP_06992611.1| DNA ligase [Escherichia coli FVEC1302]
 gi|226737618|sp|B7NEV1|LIGB_ECOLU RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218434378|emb|CAR15303.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026]
 gi|291426081|gb|EFE99115.1| DNA ligase B [Escherichia coli FVEC1412]
 gi|298276852|gb|EFI18370.1| DNA ligase [Escherichia coli FVEC1302]
          Length = 560

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 127/593 (21%), Positives = 236/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    E 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGN----ET 79

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129
           P+  +  + G +   +  V H+              +RK   +I    W ++  +     
Sbjct: 80  PDVMMPPLNGAV---IHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++G
Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 180 EIFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
                 + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 232 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKAKLPFVTDGVVV 281

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKTIQFAVGKSGKISVVASLAPV 336

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 422

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++  LS + F Q++
Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 523


>gi|300898582|ref|ZP_07116912.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 198-1]
 gi|300357745|gb|EFJ73615.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 198-1]
          Length = 561

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 127/593 (21%), Positives = 236/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    E 
Sbjct: 25  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGN----ET 80

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129
           P+  +  + G +   +  V H+              +RK   +I    W ++  +     
Sbjct: 81  PDVMMPPLNGAV---IHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++G
Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 181 EIFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
                 + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 233 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKAKLPFVTDGVVV 282

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKTIQFAVGKSGKISVVASLAPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 424 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++  LS + F Q++
Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 524


>gi|331685309|ref|ZP_08385895.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H299]
 gi|331077680|gb|EGI48892.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H299]
          Length = 561

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 127/593 (21%), Positives = 233/593 (39%), Gaps = 111/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGIYDQLSARLTQWQRCFGEETHRDA 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129
              PLN         +  V H+              +RK   +I    W ++  +     
Sbjct: 84  MMPPLN------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++G
Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 181 EIFLKREGH--IQKQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
                 + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 233 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKTKLPFVTDGVVV 282

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVARVAEVKAIQFAVGKSGKISVVASLAPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 424 KQVLGLDGIGEAGWRSLHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++  LS + F Q++
Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 524


>gi|331675125|ref|ZP_08375882.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA280]
 gi|331068034|gb|EGI39432.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA280]
          Length = 562

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 127/592 (21%), Positives = 233/592 (39%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 85  MMPPLNG----------AVIHPVAHTGVRKMADEIALSLWMRECSDLW-----------V 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 183 IFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
                + L+++   GF +        T+   V   +E+  +R     + LP+  DG++ +
Sbjct: 235 T----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAKLPFVTDGVIVR 284

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ KF        +  I   +G++G ++ VA L PV 
Sbjct: 285 A-----AKEPESRHWLPGQAEWLVAWKFQPVAQVVEVKAIQFAVGKSGKISVVASLAPVM 339

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 340 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 387

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 388 ERAKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 425

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +T +++N  G       
Sbjct: 426 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTTEQLQNTPGIAKSKSA 473

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            ++   N  R     R++ ++GI      + A   RS ++  LS + F Q++
Sbjct: 474 QIWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 525


>gi|317494707|ref|ZP_07953119.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917309|gb|EFV38656.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 571

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 177/418 (42%), Gaps = 60/418 (14%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    + E+A  E+S+L+Q+++  D+ Y+      + D  YD + +R  +    F  L  
Sbjct: 19  PCPDWAAERATHEISALQQQMAKWDEAYFLQGSSPVSDEIYDQMAQRLKSWKQCF--LTN 76

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S   N  L        LS     H +    L K+ N   +R ++         K   S++
Sbjct: 77  SSSSNSALEPTSPRNTLS-----HPVAHTGLNKLENEAAVRDWL---------KGKESVW 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE---I 184
             ++PKIDG  +T+ Y+ G+      RGDG  G+D +    +I  IP+     IP+    
Sbjct: 123 --IQPKIDGVAVTLHYQHGRLKSMISRGDGLIGQDWTKASASISAIPK----KIPDDEAY 176

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR-RLNPTDITRYLNFFVHGL 243
             ++GE+++   D     D  I        N R+  +G +R +   ++    L  F+ G 
Sbjct: 177 TVLQGELFLKVTDHQQKRDGGI--------NARSKVAGAMRLKFLSSETANQLEIFIWG- 227

Query: 244 GKTSEIFAKGQYEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
                 +  G  EM   L K+  LGFP+      A T    V  + E    +  LP+  D
Sbjct: 228 ------YPDGPAEMPQRLNKLARLGFPLAEQYTHAVTDVVDVEKWREYW-YQQPLPFVTD 280

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V  + +      +  R   P W  + K+  K + T + D+   IGR+G +  V  LEP
Sbjct: 281 GIVLHMAQQP--ASVLWRPSPPGWAAAWKYPLKSSVTEVKDVQFSIGRSGRINAVLLLEP 338

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417
           V +    ++  +L            G VMR  + D++  D+V V  AG+  P +  +I
Sbjct: 339 VTVDDKRVSRVSL------------GSVMRWQQWDVQPHDQVSVVLAGQGTPHLEKVI 384


>gi|237728943|ref|ZP_04559424.1| NAD-dependent DNA ligase LigB [Citrobacter sp. 30_2]
 gi|226909565|gb|EEH95483.1| NAD-dependent DNA ligase LigB [Citrobacter sp. 30_2]
          Length = 559

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 131/632 (20%), Positives = 250/632 (39%), Gaps = 121/632 (19%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +A +E+S L+Q+I+  +D Y++  +  + D  YD L  +       F D A    P
Sbjct: 25  WSPARANEEISRLQQQITQWNDSYWKQGESAVDDGVYDQLNAQLIQWQRCFGDEA---PP 81

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +  +  I G        V+H +P   + K+ + + L +++      W           ++
Sbjct: 82  DLSVPPISG-------TVSHPVPHTGVRKLADKQALHQWMHARSDLW-----------VQ 123

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +T+ Y KG  V A  RG+G  GED +  +  IP++P      +     ++GE+
Sbjct: 124 PKVDGVAVTLVYRKGNLVRAISRGNGLKGEDWTQKVLQIPSVPHSTKGKLANST-LQGEI 182

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           ++ +   +          ++   N R+  +G++ R   T++ R L  F+        +  
Sbjct: 183 FLQQEGHIQ--------KQRGGMNARSKVAGLMMRQGNTEMLRSLAIFIWAWPDGPAVMP 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E L+++   GF       QA      V   +  +   S LP+  DG+V +      
Sbjct: 235 ----ERLEQLTAAGFSYTQRYTQAVKNADDVE-KSRARWWSSALPFVTDGVVVRT----- 284

Query: 312 QKQLGERARSPR----------WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
                  A+ PR          W+ + K+      + +  I   +G++G +  VA L PV
Sbjct: 285 -------AKEPRAQYWLPGQGDWLAAWKYPPVTRVSEVTGIQFSVGKSGKIAVVALLTPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNE 420
            +    +    +            G V R    DI  GD++LV  AG+ IP+ +D +V  
Sbjct: 338 MLDDKRVQRVNI------------GSVRRWNEWDIAPGDQILVSLAGQGIPR-IDEVVWR 384

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
                +P                   P  G+  +         C  Q + RL     ++ 
Sbjct: 385 STQRTKPI------------------PPEGRFNSLTCFYATAECQEQFVARLVWLGGKEV 426

Query: 481 FNIEGLGK---QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
             +EG+G+   ++L+  ++ E           IF+     Q    ++E+ LG   +    
Sbjct: 427 LGLEGIGEAGWRELNQVYRFE----------HIFSWLGLTQ---EQLESALGV--IKGEK 471

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L+   N  R++   R++ ++GI    A +  S      S+Q   +        +   W  
Sbjct: 472 LWHQFNLSRDLPFTRWVIAMGIPLTQATLNASRDG---SWQQLKE-------RDEQSWRQ 521

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           L   P +G+  A+ ++++ ++ R + A+   L
Sbjct: 522 L---PFMGERRARQVIQWLED-REVTALSNWL 549


>gi|32396683|gb|AAP49298.1| NAD-dependent DNA ligase [Bacillus coagulans]
          Length = 121

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 1/118 (0%)

Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+P    +R L+ FV+GL    E+  +   E L  ++ LGF VN   
Sbjct: 1   ANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIESHSEALDYLQALGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
           R+      ++++ NE    R  LPY+IDG+V KVD F+ Q++LG  A+SPRW I++KF
Sbjct: 61  RRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKSPRWAIAYKF 118


>gi|312967984|ref|ZP_07782195.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 2362-75]
 gi|312287243|gb|EFR15152.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 2362-75]
          Length = 561

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 126/593 (21%), Positives = 233/593 (39%), Gaps = 111/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHRDA 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129
              PLN         +  V H+              +RK   +I    W ++  +     
Sbjct: 84  MMPPLN------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++G
Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 181 EIFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
                 + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 233 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKTKLPFVTDGVVV 282

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    +I  GD++LV  AG+ IP++ D++   
Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWNIAPGDQILVSLAGQGIPRIDDVVWRG 385

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 424 KQVLGLDGIGEAGWRSLHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++  LS + F Q++
Sbjct: 472 AQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 524


>gi|329996951|ref|ZP_08302648.1| NAD-dependent DNA ligase OB-fold domain protein [Klebsiella sp. MS
           92-3]
 gi|328539241|gb|EGF65270.1| NAD-dependent DNA ligase OB-fold domain protein [Klebsiella sp. MS
           92-3]
          Length = 564

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 131/633 (20%), Positives = 253/633 (39%), Gaps = 114/633 (18%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+E S L Q+I    + Y++     + D  YD L  R       FP     +D     
Sbjct: 34  RGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPEDD----- 88

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
                ++        H +    + K+ + + + +++      W           ++PK+D
Sbjct: 89  -----DLPPPTGDARHPVAHTGVRKLADEDSVARWMKNKSDLW-----------IQPKVD 132

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y +G+ V A  RGDG  GE  +A  R IP + +V++  + + + ++GE+++ +
Sbjct: 133 GVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELADSV-LQGELFLRR 191

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           +  +    +  A G     N R   +G++ R +       L+ F+         +  G  
Sbjct: 192 DGHV----QQQAGG----MNARAKVAGLMMRADAAAALGQLDVFIWA-------WPDGPS 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-----KSIRSTLPYDIDGLVYKVDEFS 310
           +M ++ + L      G + +  +   VS   ++     +  RS LP+  DG++ +     
Sbjct: 237 DMRRRQQLL---AQAGFKYSGQYTHPVSRIEQVAQWRQRWYRSPLPFVSDGVIVREG--- 290

Query: 311 LQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             ++   R  SP    W+ + K+       ++  I    GR+G L  VA LEP  +    
Sbjct: 291 --REPPGRVWSPGKGEWLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLDDKR 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH-PD 424
           +    + +    + LD           I VGD++ +  AG+ IP+V  ++    ERH P 
Sbjct: 349 VQRVNVGSVSRWQMLD-----------IGVGDQLQISLAGQGIPRVDAVVWRTAERHKPT 397

Query: 425 AQPFSFPSF-CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P  F +  C            P+               CS Q L RL    S+ A N+
Sbjct: 398 PPPAKFNALTCYFA--------TPE---------------CSEQFLSRLIWLSSKSALNV 434

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + L    + ++P         IF+       +  +++ + G       +L+   +
Sbjct: 435 DGVG-ENLWRVIQQQNPM------THIFSW---LALTVEQLQAVPGISAARGQHLWHQFD 484

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R     R++ ++GI      +A+      L  +N+    + + A +   W +L   P 
Sbjct: 485 LVRKRPFIRWVLAMGIPVPQGALAQ------LESENW----HLLAAKSEAQWRTL---PG 531

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
           VG+I A+ +V F  +P  +   + L  +  P  
Sbjct: 532 VGEIRARQLVAFLHHPDVVALAQWLSGQRIPGF 564


>gi|238897097|ref|YP_002921843.1| NAD-dependent DNA ligase LigB [Klebsiella pneumoniae NTUH-K2044]
 gi|238549425|dbj|BAH65776.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 565

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 129/625 (20%), Positives = 249/625 (39%), Gaps = 114/625 (18%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+E S L Q+I    + Y++     + D  YD L  R       FP     +D     
Sbjct: 35  RGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPEDD----- 89

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
                ++        H +    + K+ + + + +++      W           ++PK+D
Sbjct: 90  -----DLPPPTGDARHPVAHTGVRKLADEDSVARWMKNKSDLW-----------IQPKVD 133

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y +G+ V A  RGDG  GE  +A  R IP + +V++  + + + ++GE+++ +
Sbjct: 134 GVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELADSV-LQGELFLRR 192

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           +  +          R    N R   +G++ R +       L+ F+         +  G  
Sbjct: 193 DGHVQQ--------RAGGMNARAKVAGLMMRADAAAALSQLDVFIWA-------WPDGPS 237

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-----KSIRSTLPYDIDGLVYKVDEFS 310
           +M ++ + L      G + +  +   VS   ++     +  RS LP+  DG++ +     
Sbjct: 238 DMRRRQQLL---AQAGFKYSGQYTHPVSRIEQVAQWRQRWYRSPLPFVSDGVIVREG--- 291

Query: 311 LQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             ++   R  SP    W+ + K+       ++  I    GR+G L  VA LEP  +    
Sbjct: 292 --REPPGRVWSPGKGEWLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLDDKR 349

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH-PD 424
           +    + +    + LD           I VGD++ +  AG+ IP+V  ++    ERH P 
Sbjct: 350 VQRVNVGSVSRWQMLD-----------IGVGDQLQISLAGQGIPRVDAVVWRTAERHKPT 398

Query: 425 AQPFSFPSF-CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P  F +  C            P+               CS Q L RL    S+ A N+
Sbjct: 399 PPPAKFNALTCYFA--------TPE---------------CSEQFLSRLIWLSSKSALNV 435

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + L    + ++P         IF+       +  +++ + G       +L+   +
Sbjct: 436 DGVG-ENLWRVIQQQNPM------THIFSW---LALTVEQLQALPGISAARGQHLWHQFD 485

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R     R++ ++GI      +A+      L  +N+    + + A +   W +L   P 
Sbjct: 486 LVRKRPFIRWVLAMGIPVPQGALAQ------LESENW----HLLAAKSEAQWRTL---PG 532

Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL 628
           VG+I A+ +V F  +P  +   + L
Sbjct: 533 VGEIRARQLVAFLHHPDVVALAQWL 557


>gi|326629797|gb|EGE36140.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 562

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 132/638 (20%), Positives = 242/638 (37%), Gaps = 112/638 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 25  AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 85  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 124 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 183 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G    N +   V   +E++  R     S LP+  DG+V +
Sbjct: 228 PDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 284

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 285 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 342

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH--- 422
             +      N D +K  +A         DI  GD++LV  AG+ IP++ +++   R    
Sbjct: 343 KRVQRV---NIDSVKRWEA--------WDIAPGDQILVSLAGQGIPRLDEVVWRSRERSK 391

Query: 423 ---PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
              PD+   S   F                              C  Q + RL    SR 
Sbjct: 392 PVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSRS 426

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A  ++G+G+       ++    F       IF+       ++ +I N  GF       ++
Sbjct: 427 ALGLDGMGEASWRALHQTHR--FK-----HIFSW---LALTSAQIANTPGFAKGKSEQIW 476

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
              N  R  S  R+I ++ I    A +  S  + +            ++      W  L 
Sbjct: 477 RQFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWWQL- 525

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
             P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 526 --PATGERRAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 561


>gi|205354659|ref|YP_002228460.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|226737623|sp|B5RG75|LIGB_SALG2 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|205274440|emb|CAR39472.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 561

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 132/638 (20%), Positives = 242/638 (37%), Gaps = 112/638 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G    N +   V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH--- 422
             +      N D +K  +A         DI  GD++LV  AG+ IP++ +++   R    
Sbjct: 342 KRVQRV---NIDSVKRWEA--------WDIAPGDQILVSLAGQGIPRLDEVVWRSRERSK 390

Query: 423 ---PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
              PD+   S   F                              C  Q + RL    SR 
Sbjct: 391 PVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSRS 425

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A  ++G+G+       ++    F       IF+       ++ +I N  GF       ++
Sbjct: 426 ALGLDGMGEASWRALHQTHR--FK-----HIFSW---LALTSAQIANTPGFAKGKSEQIW 475

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
              N  R  S  R+I ++ I    A +  S  + +            ++      W  L 
Sbjct: 476 RQFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWWQL- 524

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
             P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 525 --PATGERRAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560


>gi|288550204|ref|ZP_05969603.2| hypothetical protein ENTCAN_08224 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316113|gb|EFC55051.1| NAD-dependent DNA ligase adenylation domain protein [Enterobacter
           cancerogenus ATCC 35316]
          Length = 548

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 143/629 (22%), Positives = 249/629 (39%), Gaps = 118/629 (18%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A KE+++L  +    D+ Y++     + D  YD L  R       F + A +E P   L
Sbjct: 19  KAEKEIAALSAQKIRWDEAYWKEGTSEVSDEIYDQLTARLAQWQRCFSN-APAESP---L 74

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             + G        V H I    ++K+ + E LR+++      W           ++PK+D
Sbjct: 75  PALKG-------TVKHPIAHTGVQKVASKEALRQWMYARRDLW-----------VQPKVD 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y  G    A  RGDG  GED +A +RA+P +P+     +   + ++GE+++ +
Sbjct: 117 GVAVTLVYRNGTLSQAVSRGDGVKGEDWTAQVRAMPLVPQSTEGALANSV-LQGELFLLR 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           ++ +    +M  +      N R   +G + R     + + +  F+         +  G  
Sbjct: 176 DNHI--QQQMGGM------NARAKVAGAMMRHADASLLKQIGVFIWA-------WPDGPK 220

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFS 310
            M Q +  L     +G      +   V   +E++  R     S LP+  DG+V +    S
Sbjct: 221 AMQQHLTQLS---QSGFDLTARYTLPVQSADEVEKQRAHWFTSPLPFVTDGVVVR----S 273

Query: 311 LQKQLGER--ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +  G+R       W+I+ K+        + DI   +GRTG ++ VA L PV +    +
Sbjct: 274 AAEPAGDRWLPGEGNWVIAWKYTPVSQVADVRDIQFAVGRTGKISVVALLAPVQLDDKRV 333

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV------NERH 422
              +L + D  + L           DI  GD +L+  AG+ IP+   +I         R 
Sbjct: 334 QRVSLGSVDRWQRL-----------DIAPGDHILISLAGQGIPRFEKVIWRGVERQKPRP 382

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P +Q  S   F            +P+               C  Q   RL    S    +
Sbjct: 383 PASQFHSLTCFY----------ASPE---------------CMDQFFSRLTWLSSTQGLD 417

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           ++GLG+      +++    F       IF+  R  Q    +I++  GF       L+   
Sbjct: 418 VKGLGEAGWRALYQAHH--FE-----HIFSWLRLNQ---AQIQSTPGFSAARGVALWHRF 467

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N  R     R+I ++GI    A +    A    S+Q        + +   ++W  L   P
Sbjct: 468 NLIREQPFIRWITAMGIPVTKATLN---AAGDTSWQ-------AMRSRRAEEWQHL---P 514

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             G   A  IVE+  +P+ + A+ A L E
Sbjct: 515 GTGKEKALQIVEWLHHPQ-VEALAAWLAE 542


>gi|238755583|ref|ZP_04616920.1| DNA ligase B [Yersinia ruckeri ATCC 29473]
 gi|238706183|gb|EEP98563.1| DNA ligase B [Yersinia ruckeri ATCC 29473]
          Length = 569

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 203/452 (44%), Gaps = 74/452 (16%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP--NGPLNK 77
           E++ +E++    D  Y+Q    +I D  YD L +R   ++H +    ++ +P  N  +  
Sbjct: 35  EIAKMEEQFGQWDKAYHQQGNSLIDDDIYDQLHQR---LSH-WKSCVKALEPAVNSHITA 90

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           + G  +    KVTH +    L+K+       ++I      W           ++PK+DG 
Sbjct: 91  LAGVSD----KVTHPVAHTGLKKLTGNLAASEWILARKNLW-----------VQPKVDGV 135

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y +G       RGDG  G+D +   + I  IP ++S   P ++ + GE+++  +D
Sbjct: 136 AVTLTYLQGHLTQVISRGDGVRGQDWTDKAQYISAIPSLIS-PAPPLLVLHGELFLRVHD 194

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
               +   I        N R + +G L R +P+ +   +  F+         +  G   M
Sbjct: 195 HRQKDSGGI--------NARASVAGALMRKSPSSLLSQIGVFIWA-------WPDGPASM 239

Query: 258 LQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE----FS 310
           ++K+R L   GF ++       T      ++ ++   +S LP+  DG+V + +E      
Sbjct: 240 VEKLRTLHRMGFTLSEEFSVPITSFTDAVHWRKI-WFQSPLPFVTDGIVIRQEEEPAGHY 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q Q G       W I+ K+   Q   ++  ++  IGRTG ++ V  L P+ +       
Sbjct: 299 WQSQPG------YWSIAWKYPPFQQMAQVKSVNFTIGRTGKISAVLHLSPIKL------- 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKV--VDIIVNERH----P 423
               ++ ++KG++  G V R  R ++  GD+V+V  AG+ IP++  V   V++R     P
Sbjct: 346 ----DDKWVKGVNL-GTVARWKRWNVLPGDQVIVSLAGQGIPRLDKVAWRVDKRDEISTP 400

Query: 424 DAQPF-SFPSF---CPICQSRVVRDLNPKTGK 451
           D   F +F  F     +C+++ +  L   +G+
Sbjct: 401 DMDQFHTFSCFRRESTLCETQFIARLTWLSGR 432


>gi|284923709|emb|CBG36806.1| putative DNA ligase [Escherichia coli 042]
          Length = 560

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 128/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129
              PLN         +  V H+              +RK   +I    W ++  +     
Sbjct: 83  MMPPLN------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++G
Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 180 EIFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
                 + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 232 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAKLPFVTDGVVV 281

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPV 336

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 422

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++  LS + F Q++
Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 523


>gi|170719684|ref|YP_001747372.1| NAD-dependent DNA ligase LigB [Pseudomonas putida W619]
 gi|257096560|sp|B1J2Z7|LIGB_PSEPW RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|169757687|gb|ACA71003.1| DNA ligase (NAD(+)) [Pseudomonas putida W619]
          Length = 567

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 136/614 (22%), Positives = 237/614 (38%), Gaps = 106/614 (17%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S +QAR E++ L   ++  DD Y++    ++ D  YD  +     +   F       DP
Sbjct: 26  WSTKQARTEVAQLRATLANWDDHYHRQGIALVADELYDQARHHLLHLQQCFGQ--EFTDP 83

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + PL    G        + H +    +EK+ +   + +++T     W           ++
Sbjct: 84  S-PLASARG-------PIAHPVAHTGVEKLHDAAAVARWMTGKKGVW-----------VQ 124

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +++ Y +G+ V    RGDG  G D S  I+ + +I R   L  P  + ++GE+
Sbjct: 125 PKVDGVAVSLVYRQGRLVQLLSRGDGLQGHDWSRHIKDLDSITR--QLPQPLDVVLQGEL 182

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNP---TDITRYLNFFVHGLGKT 246
           Y      L L   + A      +N R   +G+L R  L P     I  ++  + HG    
Sbjct: 183 Y------LRLQAHVQAEAGS--SNVRGTVAGMLARKQLGPEPGASIGLFVWDWPHG---- 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  Q E L ++   GFP +     A       +++  +   RS LP+  DG++ + 
Sbjct: 231 ----PDNQGERLTQLAAWGFPDSQRFSTAIDTPEEATHWR-LHWYRSPLPFATDGVILRQ 285

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D      +   +  +P W+ + K+   QA   + ++   IGRTG +TP+ RL+PV +   
Sbjct: 286 DSRPPADRW--QPNAPYWIAAWKYPFAQALAEVREVRFLIGRTGKVTPLLRLKPVTLDDR 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+  +L +    + L           DIR GD+V +  AG  IP+              
Sbjct: 344 RISQVSLGSLARWRAL-----------DIRPGDQVAISLAGLTIPR-------------- 378

Query: 427 PFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIE 484
                 F  +    V R + P    +    H C      C  Q + RL     +    + 
Sbjct: 379 ------FDQVVHRAVERQVLPVPEAEQYGQHSCWQASDGCQEQFIARLVWLSGKQGLAMP 432

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G GK       +    A  +    D  TL  +Q      + ++ G    + T L  S + 
Sbjct: 433 GTGKGTWKRLVQ----AGLVTSLTDWLTLDAQQ------LLSVPGISRKTATQLQRSFDI 482

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            RN    ++   LG+    A++ R             +    +   +  DW +L   P +
Sbjct: 483 GRNRPFAQWRKGLGVP-APAQVPRD------------ENWQTLAGRSASDWQTL---PGI 526

Query: 605 GDIIAQAIVEFYQN 618
           G   A  +  F+ +
Sbjct: 527 GATRATQLANFFTH 540


>gi|226327976|ref|ZP_03803494.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198]
 gi|225203680|gb|EEG86034.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198]
          Length = 186

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 63/188 (33%), Positives = 107/188 (56%), Gaps = 16/188 (8%)

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +++K ++ +  RFI++LGIR VG   A  L  ++ + +          A  N D  +
Sbjct: 8   LITALDKAKSTTFARFIYALGIREVGEATASGLTAHFSTLE----------ALRNADVEA 57

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKL 652
           L  VP VGDI+A+ +V F+Q   N   ++ L+ +      +P I  HE    +    K +
Sbjct: 58  LKLVPDVGDIVAKHVVNFFQEEHNRTVIDQLINDAGITWQAPIIVTHEVG-ENPFAGKTV 116

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L ++ R +A++ +  LGA VS  +S+KTD++I G+  GSKL KA +LG+ +++E+
Sbjct: 117 VLTGSLSQLTRDEAKDRLVALGAKVSGSVSKKTDMVIAGEAAGSKLVKANELGITVIDED 176

Query: 713 QFLFLLQQ 720
           + + LL Q
Sbjct: 177 EMIRLLDQ 184


>gi|207858976|ref|YP_002245627.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|226737622|sp|B5R5H2|LIGB_SALEP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|206710779|emb|CAR35140.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 561

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 132/638 (20%), Positives = 242/638 (37%), Gaps = 112/638 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G    N +   V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH--- 422
             +      N D +K  +A         DI  GD++LV  AG+ IP++ +++   R    
Sbjct: 342 KRVQRV---NIDSVKRWEAW--------DIAPGDQILVSLAGQGIPRLDEVVWRSRERSK 390

Query: 423 ---PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
              PD+   S   F                              C  Q + RL    SR 
Sbjct: 391 PVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSRS 425

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A  ++G+G+       ++    F       IF+       ++ +I N  GF       ++
Sbjct: 426 ALGLDGMGEASWRALHQTHR--FK-----HIFSW---LALTSAQIANTPGFAKGKSEQIW 475

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
              N  R  S  R+I ++ I    A +  S  + +            ++      W  L 
Sbjct: 476 RQFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL- 524

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
             P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 525 --PATGERRAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560


>gi|237802303|ref|ZP_04590764.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331025160|gb|EGI05216.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 560

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 125/557 (22%), Positives = 222/557 (39%), Gaps = 88/557 (15%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +A  E+++L+++I+  DD Y++     I D  YD  + +       F     S   +
Sbjct: 29  SAARANNEITALQKQIAEWDDSYHRQGVSQIPDELYDQSRLKLKVWRSCF---RVSTVAD 85

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            PL    G +        H IP   + K+ + + +  ++      W           ++P
Sbjct: 86  NPLKTATGPL-------AHPIPHTGVNKLADEKSVTAWLRGRTDVW-----------IQP 127

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ YE G+ V A  RGDG  G+D +   R I  IP+   L   E + ++GE+Y
Sbjct: 128 KVDGVAVTLVYEGGRLVQAISRGDGKKGKDWTPQARLIKAIPQ--QLPHAEYLVLQGELY 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGIL--RRLNPTDITRYLNFFVHGLGKTSEIF 250
              +D +      I        N R+  +G+L  R ++P             +G     +
Sbjct: 186 WRLDDHIQAISGSI--------NARSKVAGLLARRTISPQQ--------ADAIGLLVWDW 229

Query: 251 AKGQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             G  +M Q++  L   GF  +         H   S + E    R+ LP+  DG++ +  
Sbjct: 230 PNGPADMPQRLAGLQAQGFEDSATYTHRLENHAQASQWRE-HWYRNPLPFATDGVIIRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  ++  IGR+G +TPV  L+PV +    
Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFNIGRSGRITPVLELKPVRL---- 342

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
                   +D      ++G + R    DIR GD++ V  AG  IP++  ++   R  +  
Sbjct: 343 --------DDRTVSRISTGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVA--RAAERV 392

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
             + P      +              ++  + T G  C +Q   RL     +    + G+
Sbjct: 393 SMTIPHASDFHE--------------LSCWQATPG--CESQFRARLIWLSGKKGLALPGV 436

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G    D   +S      I    D  TL         ++ NI G  + S   L DS+   R
Sbjct: 437 GPGTWDKLIESGQ----ISGLLDWMTLNH------AELANIPGLAERSSAKLLDSLQTAR 486

Query: 547 NISLERFIFSLGIRHVG 563
                 ++ ++G+   G
Sbjct: 487 AKPFLAWLKAIGMPPTG 503


>gi|271502618|ref|YP_003335644.1| DNA ligase [Dickeya dadantii Ech586]
 gi|270346173|gb|ACZ78938.1| DNA ligase (NAD(+)) [Dickeya dadantii Ech586]
          Length = 561

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 180/414 (43%), Gaps = 56/414 (13%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P  A S  +A +E++ L Q+++  D+ YY   +  + D  YD L++        F     
Sbjct: 23  PCPAWSPARAEQEIARLGQQLTQWDNAYYDRGQSPVDDQVYDQLRQTLATWQVCF----- 77

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
             D +G    +      S  K  H +    L+K+    +L+++I +    W         
Sbjct: 78  QADADGFAVSLP-----SSGKQPHPVAHTGLKKLTEPAELKQWIAQHRNLW--------- 123

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PKIDG  +T+ YE+GK V A  RG+G  GED +  +R +  +P+ LS  I   + +
Sbjct: 124 --IQPKIDGVAVTLVYEQGKLVSAISRGNGRQGEDWTDKVRQMNAVPQQLS-GISGRLVL 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+Y+S           I        N R   +G +RR  P+ +   ++ F+       
Sbjct: 181 QGELYLSVTAHRQQQTGGI--------NARAQVAGEMRRKQPSPLLSRIDVFIWA----- 227

Query: 248 EIFAKGQYEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             +  G  +M   L  +R LGF +     Q        + + E +  ++ LP+  DG+V 
Sbjct: 228 --WPDGPADMSTRLAALRELGFGLTADYTQPIASFEEAARWRE-RWYQAPLPFVTDGVVL 284

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
              +    +   +      W ++ K+      T +  +D++IGRTG +T V +++P+ + 
Sbjct: 285 HQSQEPAGRYWQD--TPAEWAVAWKYPLVNRVTEVTGVDVEIGRTGRMTVVLQVQPMMLD 342

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417
              ++   L            G V R  + D+  GDRV +  AG  IP++  ++
Sbjct: 343 DKNVSRVNL------------GSVSRWRQWDVLPGDRVSISLAGLGIPRLDAVV 384


>gi|304399036|ref|ZP_07380905.1| DNA ligase (NAD(+)) [Pantoea sp. aB]
 gi|304353496|gb|EFM17874.1| DNA ligase (NAD(+)) [Pantoea sp. aB]
          Length = 583

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 194/454 (42%), Gaps = 71/454 (15%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A +E+  L+Q++ + DD YY+  +  + D++YDAL++R     H F     +  P  P 
Sbjct: 32  RATEEIGRLQQQLQHWDDAYYRQGQSPVTDTDYDALQQRLVTWQHCFSASQPTYSPQLPG 91

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
               GE    L  + H+           ++ +R  +   Y    ++D       ++PK+D
Sbjct: 92  K---GE---HLHPIAHT----------GVKKMRDKLALAYWMQGRRD-----LWVQPKVD 130

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ Y  G+ V    RGDG  GE+  A    IP IP  +   + E++ ++GE+++  
Sbjct: 131 GIAVSLVYRHGRLVSLLSRGDGLRGEEWLAKAAWIPAIPLHIETPLDEVV-LQGELFLLM 189

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           N     + + I  G+    N R+  +G +     T +   L  F+           + ++
Sbjct: 190 NG----HQQAIDGGK----NARSLVAGAMMSRQRTPLLDSLGVFIWAWPDGPATMTE-RH 240

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGI-----VSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           E L +   LG         A   H +     V+ + E +   + LP+  DG+V       
Sbjct: 241 EQLSRW-GLGI-------AAEWSHNVKDEEDVAIWRE-RWFHAALPFVTDGVVVHQSLRP 291

Query: 311 LQKQL--GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             K    GE      W ++ K+   + S  +L +D  IGRTG +  V  L+PV +     
Sbjct: 292 AGKNWLPGEGI----WAVAWKYQPPEVSAEVLSVDFLIGRTGKIAAVLNLQPVQL----- 342

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH---- 422
                 ++  ++ ++          DI  GD V +  AG+ IP++  +I  V ERH    
Sbjct: 343 ------DDKTVRRVNVGSLRRWQESDIVAGDVVTLSLAGQGIPRLERVIWRVAERHYPQP 396

Query: 423 PDAQ---PFSFPSFCPICQSRVVRDLNPKTGKLV 453
           P+A    P S  +F   CQ +++  L   + K V
Sbjct: 397 PEASRYTPLSCYTFSAECQKQLLAKLRWLSQKTV 430


>gi|168260506|ref|ZP_02682479.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205350522|gb|EDZ37153.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 561

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 131/620 (21%), Positives = 240/620 (38%), Gaps = 110/620 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+ A+G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +  +V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKNASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERH 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++    ER 
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSCERS 389

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
               P S                N  T    +A        C  Q + RL    SR A  
Sbjct: 390 KPVPPDSH--------------FNSLTCFYASA-------TCQEQFISRLVWLGSRSALG 428

Query: 483 IEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           ++G+G+       ++   +  FS        TL      ++ +I N  GF       ++ 
Sbjct: 429 LDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSEQIWR 476

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
             N  R  S  R+I ++ I    A +  S  + +            ++      W  L  
Sbjct: 477 QFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL-- 524

Query: 601 VPLVGDIIAQAIVEFYQNPR 620
            P  G+  A  ++++  NP+
Sbjct: 525 -PATGERRAGRVIDWRNNPQ 543


>gi|257484999|ref|ZP_05639040.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 181

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 10/184 (5%)

Query: 48  YDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDL 107
           YD L     A+    P L     P+ P  ++G     +  +V H +P LSL   +   D+
Sbjct: 1   YDRLFHELKALEAENPHLV---TPDSPTQRVGSAALSAFTQVRHEMPMLSLGNAFEESDM 57

Query: 108 RKFITRIYRFWQKKDDN------SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGE 161
            +F  R+         +       + ++ EPK+DG  +++ Y  G  V  A RGDG +GE
Sbjct: 58  LEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGLAVSLLYRDGALVCGATRGDGTTGE 117

Query: 162 DVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
           D+S  +R +  IP ++     P+++EVRGEV++SK  F  LN   + +G K +ANPRNAA
Sbjct: 118 DISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAA 177

Query: 221 SGIL 224
           +G L
Sbjct: 178 AGSL 181


>gi|167036006|ref|YP_001671237.1| NAD-dependent DNA ligase LigB [Pseudomonas putida GB-1]
 gi|189046591|sp|B0KLZ2|LIGB_PSEPG RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|166862494|gb|ABZ00902.1| DNA ligase (NAD(+)) [Pseudomonas putida GB-1]
          Length = 566

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 118/535 (22%), Positives = 218/535 (40%), Gaps = 93/535 (17%)

Query: 32  DDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP----NGPLNKIGGEMNLSLF 87
           D+ Y++    ++ D  YD  ++R   +   F  LA S  P     GPL            
Sbjct: 46  DEHYHRQGIALVADELYDQSRQRLVHLQQCF-GLAPSPSPLTSARGPL------------ 92

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
              H +P   ++K+ + + + +++      W           ++PK DG   ++ Y +G+
Sbjct: 93  --PHPVPHTGVDKLADRQAVARWMAGKTGVW-----------VQPKFDGVAASLIYRQGQ 139

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEVYISKNDFLALNDEM 205
            V    RGDG  G D S   R IP +  V +  +P+ I++  +GE+Y      L LN+ +
Sbjct: 140 LVQLISRGDGLQGHDWS---RHIPQLGAV-TRQLPQAIDLHLQGELY------LRLNEHV 189

Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
            A  +   AN R   +G+L R   T +    +  FV G     E     Q + L ++  L
Sbjct: 190 QA--KAGSANARGTVAGLLARKQLTREQGNTIGLFVWGWPHGPER----QADRLAQLAQL 243

Query: 265 GFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           GFP +     A +T      +       RS LP+  DG++ ++      ++   +A++P 
Sbjct: 244 GFPDSQHYSIAVDTLEDAARWREHW--YRSPLPFASDGVILRLGSRPPAERW--QAKAPY 299

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W+ + K+   QA   + D+  ++GRTG +TP+A ++PV +    IT  +L +    + L 
Sbjct: 300 WIAAWKYPYVQALAEVRDVRFRVGRTGRITPIAHVQPVTLDDRRITQVSLGSLARWQAL- 358

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                     DIR GD+V +  AG  IP++  ++   R  + QP   P+     +   + 
Sbjct: 359 ----------DIRPGDQVAISLAGLTIPRLEHVV--HRAVERQPLGAPA---PGRHHALS 403

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
              P  G             C  Q + RL     +    +   G         +      
Sbjct: 404 CWQPSEG-------------CEEQFIARLTWLSGKQGLALPRTGPGTWRRLVDA------ 444

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                 + ++    Q    +++ + G   ++   L  S ++ R+   ++++  LG
Sbjct: 445 ----GLVTSMTDWLQLDAERLQQVPGISSLTAAQLLGSFDQARSRPFDQWLRGLG 495


>gi|170681126|ref|YP_001745947.1| NAD-dependent DNA ligase LigB [Escherichia coli SMS-3-5]
 gi|226737619|sp|B1LK84|LIGB_ECOSM RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|170518844|gb|ACB17022.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli SMS-3-5]
          Length = 560

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 126/592 (21%), Positives = 230/592 (38%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DA 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++ 
Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
                + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 233 T----DRLKELATAGFTLT------QTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|331659983|ref|ZP_08360921.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA206]
 gi|331053198|gb|EGI25231.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA206]
          Length = 560

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 127/592 (21%), Positives = 231/592 (39%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++ 
Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
                + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 233 T----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKTKLPFVTDGVVVR 282

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGSAKSKSA 471

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++  LS + F Q++
Sbjct: 472 QLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 523


>gi|315296990|gb|EFU56270.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 16-3]
          Length = 561

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 127/592 (21%), Positives = 231/592 (39%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 25  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 84  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++ 
Sbjct: 182 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
                + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 234 T----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKTKLPFVTDGVVVR 283

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 284 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 338

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 339 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 386

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 387 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 424

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 425 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGSAKSKSA 472

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++  LS + F Q++
Sbjct: 473 QLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 524


>gi|301018976|ref|ZP_07183199.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 69-1]
 gi|300399470|gb|EFJ83008.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 69-1]
          Length = 561

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 128/593 (21%), Positives = 233/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 25  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGIYDQLSARLTQWQRCFGNETR-DV 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129
              PLN         +  V H+              +RK   +I    W ++  +     
Sbjct: 84  MMPPLN------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+  S  +     ++G
Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTASGPLANST-LQG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 181 EIFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
                 + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 233 MT----DRLKELTTAGFTLT------QTYTRAVKNADEVARVRNAWWKAKLPFVTDGVVV 282

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 283 RA-----AKEPESRYWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 424 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471

Query: 536 TNLYDSINKRRNISLERFIFSLGIR----HVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++  LS + F Q++
Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRVALNASDERSWSQLLLSTEQFWQQL 524


>gi|166226372|sp|Q8FC83|LIGB_ECOL6 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 128/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 226 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    I    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 338 LDDKKIQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|227883837|ref|ZP_04001642.1| NAD-dependent DNA ligase LigB [Escherichia coli 83972]
 gi|300984900|ref|ZP_07177188.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 45-1]
 gi|301047437|ref|ZP_07194516.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 185-1]
 gi|227839115|gb|EEJ49581.1| NAD-dependent DNA ligase LigB [Escherichia coli 83972]
 gi|300300645|gb|EFJ57030.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 185-1]
 gi|300408329|gb|EFJ91867.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 45-1]
 gi|307555765|gb|ADN48540.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli ABU 83972]
 gi|315292916|gb|EFU52268.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 153-1]
          Length = 561

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 128/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 25  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 84  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 182 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 227 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 283

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 284 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 338

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    I    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 339 LDDKKIQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 386

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 387 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 424

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 425 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 472

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 473 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524


>gi|26250293|ref|NP_756333.1| NAD-dependent DNA ligase LigB [Escherichia coli CFT073]
 gi|26110723|gb|AAN82907.1|AE016769_22 Hypothetical DNA ligase-like protein yicF [Escherichia coli CFT073]
          Length = 562

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 128/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 85  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 183 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 228 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 284

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 285 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 339

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    I    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 340 LDDKKIQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 387

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 388 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 425

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 426 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 473

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 474 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|331665272|ref|ZP_08366173.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA143]
 gi|331057782|gb|EGI29768.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA143]
          Length = 560

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 126/588 (21%), Positives = 232/588 (39%), Gaps = 112/588 (19%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R +    PL
Sbjct: 29  RAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DVMMPPL 87

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFTLEPKI 134
           N         +  V H+              +RK   +I    W ++  +     ++PK+
Sbjct: 88  N------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LWVQPKV 125

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE+++ 
Sbjct: 126 DGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGEIFLK 184

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           +     +  +M  +      N R   +G++ R + +D    L  FV       ++     
Sbjct: 185 REGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMT--- 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEF 309
            + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V +    
Sbjct: 234 -DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKAKLPFVTDGVVVRA--- 283

Query: 310 SLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
              K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 284 --AKEPESRHWLPGQAEWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHP 423
            +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER  
Sbjct: 342 KVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK 389

Query: 424 DAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              P + F S      S V                      C  Q + RL    S+    
Sbjct: 390 PTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLG 427

Query: 483 IEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           ++G+G+       ++   +  FS  +             +  +++N  G        L+ 
Sbjct: 428 LDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWH 475

Query: 541 SINKRRNISLERFIFSLGIR----HVGAEIARSLAKYYLSYQNFAQEI 584
             N  R     R++ ++GI      + A   RS ++  LS + F Q++
Sbjct: 476 QFNLARKQPFTRWVMAMGIPLTRVALNASDERSWSQLLLSTEQFWQQL 523


>gi|215488942|ref|YP_002331373.1| NAD-dependent DNA ligase LigB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|254809143|sp|B7UM69|LIGB_ECO27 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|215267014|emb|CAS11459.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 561

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 125/593 (21%), Positives = 232/593 (39%), Gaps = 111/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHRDA 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129
              PLN         +  V H+              +RK   +I    W ++  +     
Sbjct: 84  MMPPLN------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++G
Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   + ++ R + +D    L  FV       ++
Sbjct: 181 EIFLKREGH--IQQQMGGI------NARAKVADLMMRQDDSDTLNSLGVFVWAWPDGPQL 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
                 + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 233 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKTKLPFVTDGVVV 282

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    +I  GD++LV  AG+ IP++ D++   
Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWNIAPGDQILVSLAGQGIPRIDDVVWRG 385

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 424 KQVLGLDGIGEAGWRSLHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++  LS + F Q++
Sbjct: 472 AQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 524


>gi|312948208|gb|ADR29035.1| NAD-dependent DNA ligase LigB [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 560

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 128/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 181 IFLQRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 226 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    I    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 338 LDDKKIQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|325499453|gb|EGC97312.1| NAD-dependent DNA ligase LigB [Escherichia fergusonii ECD227]
          Length = 547

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 128/611 (20%), Positives = 236/611 (38%), Gaps = 112/611 (18%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A +E+S L+ ++    D Y++  K  + D  YD L  R       F D A SE    P+
Sbjct: 15  RANEEISRLQLQLKQWSDTYWKEGKSTVEDHVYDQLSARLAQWQRCFGDNADSETMMPPI 74

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +            V H +    + K+ +   L++++      W           ++PK+D
Sbjct: 75  SGT----------VMHPVAHTGVRKLADKNALQQWMRARRDVW-----------VQPKVD 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y  GK   A  RG+G  GED +  +R IP++P+ +S  +     ++GE+Y+ +
Sbjct: 114 GVAVTLVYRDGKLNQAISRGNGLKGEDWTQRLRLIPSVPQNVSGPLANST-LQGEIYLQR 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
                +  +M  +      N R+  +G++ R   TD    L  F+       +       
Sbjct: 173 EGH--IQQQMGGM------NARSKVAGMMMRHGNTDTLNSLGVFIWAWPDGPQSMP---- 220

Query: 256 EMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV----DEFS 310
           E LQ +   GF +     R+ N+   +    +E    ++ LP+  DG+V +V    D   
Sbjct: 221 ERLQILTAAGFILTQQYTREVNSAREVEQIRSEW--WKTKLPFVTDGVVVRVGKEPDSRH 278

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q   G+      W+ + K+        +  I   +G++G +  VA L P+ +    +  
Sbjct: 279 WQPGQGD------WLAAWKYPPIAQVAEVNAIHFTVGKSGKIAVVASLAPIKLDDKRVQR 332

Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIV--NERHPDAQP 427
             +            G V R    DI  GD++LV  AG+ IP++ +++    ER     P
Sbjct: 333 VNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDNVVWRGTERTKPTPP 380

Query: 428 FS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + F S      S V                      C  Q + RL    S+    ++G+
Sbjct: 381 ENRFNSLTCYFASDV----------------------CREQFISRLVWLGSKQVLGLDGI 418

Query: 487 GKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+       ++   +  FS  +             +  +++N  G        L+   N 
Sbjct: 419 GEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFNL 466

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R     R++ ++GI    A +   L   + S+Q        +++    DW  L   P  
Sbjct: 467 ARKQPFTRWLMAMGIPLTQAALKSHL---FDSWQ-------QVMSQTKQDWQQL---PGT 513

Query: 605 GDIIAQAIVEF 615
           G   A  ++++
Sbjct: 514 GSRRASQVIKW 524


>gi|238794537|ref|ZP_04638145.1| DNA ligase B [Yersinia intermedia ATCC 29909]
 gi|238726117|gb|EEQ17663.1| DNA ligase B [Yersinia intermedia ATCC 29909]
          Length = 567

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 123/550 (22%), Positives = 221/550 (40%), Gaps = 87/550 (15%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI--AHAFPDLARSEDPN 72
           E+   E+++L+Q++      Y+Q    +I D  YD L+ +       H  PD       N
Sbjct: 35  ERMSAEINTLKQQLDKWSVAYHQQGISLIADDVYDQLQEKLALWQSCHRLPD-------N 87

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
                I G          H +    L+K+ N   L  ++      W           ++P
Sbjct: 88  HGNTLIPGNGTFR-----HPVAHTGLKKLKNEAALANWMVGRKSLW-----------VQP 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ Y+ GK +    RG+G  G++ +     I  IP+ ++   P  + ++GE++
Sbjct: 132 KVDGVAVTLVYQDGKLIQLLSRGNGLKGQNWTDKAPFITAIPQYIA-TAPPWLTLQGELF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL-GKTSEIFA 251
           +   D L  +   +        N R A +G L R +P  +   L  F+       S +  
Sbjct: 191 LQMGDHLQASSGGV--------NARAAVAGALMRKSPAALLPQLGIFIWAWPDGPSSMVE 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           KG  E+LQ M   GFP+     +       V+++       + LP+  DG+V  + + + 
Sbjct: 243 KG--ELLQAM---GFPLTAKYSKPIASSRDVAHFRH-HWFHTALPFVTDGVV--IRQAAE 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
                 +A    W ++ K+  +Q  T + DI   IGRTG +T V  + PV I        
Sbjct: 295 PAGRNWQAVPGYWAVAWKYPAQQQITEIKDIHFTIGRTGRVTVVLLVSPVKI-------- 346

Query: 372 TLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQPF 428
              ++ +I+ ++  G V R  + DI  GD++++  AG  IP++  ++  V++R    Q F
Sbjct: 347 ---DDKWIRRVNV-GSVSRWRQWDITSGDQIIIALAGHGIPRLESVVWRVSQR----QEF 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P+     Q    R ++P+               C  Q L RL         +I+ +  
Sbjct: 399 TPPAGDQFHQLSCFRLISPE---------------CEPQLLSRLIWLSGPKGLDIQSISS 443

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                +++       I       +L R Q      I  + G G     N+Y      R  
Sbjct: 444 G----YWRDLIHHGLINDLVGWLSLTRDQ------IAGVPGIGTARAENIYQQFQSTRQK 493

Query: 549 SLERFIFSLG 558
              +++ +LG
Sbjct: 494 PFSQWLQALG 503


>gi|218691930|ref|YP_002400142.1| NAD-dependent DNA ligase LigB [Escherichia coli ED1a]
 gi|254809145|sp|B7N287|LIGB_ECO81 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218429494|emb|CAR10458.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a]
          Length = 560

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 128/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 226 PDGPHLMTDRLKDL---ATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    I    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 338 LDDKKIQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSKEQFWQQL 523


>gi|197247797|ref|YP_002148670.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|226737620|sp|B5EXF2|LIGB_SALA4 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|197211500|gb|ACH48897.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 561

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 131/641 (20%), Positives = 241/641 (37%), Gaps = 118/641 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +  +V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
            A  ++G+G+       ++   +  FS        TL      ++ +I N  GF      
Sbjct: 425 SALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSE 472

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            ++   N  R  S  R+I ++ I    A +  S  + +            ++      W 
Sbjct: 473 QIWRQFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWR 522

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            L   P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 523 QL---PATGERRAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560


>gi|218702416|ref|YP_002410045.1| NAD-dependent DNA ligase LigB [Escherichia coli IAI39]
 gi|226737615|sp|B7NQ11|LIGB_ECO7I RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218372402|emb|CAR20276.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39]
          Length = 560

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 124/595 (20%), Positives = 231/595 (38%), Gaps = 116/595 (19%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DA 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++ 
Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
                + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 233 T----DRLKELATAGFTLT------QTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVM 337

Query: 363 IGGALITNATL----HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +    +    +    H +++               DI  GD++LV  AG+ IP++ D++ 
Sbjct: 338 LDDKKVQRVNIGSVRHWQEW---------------DIAPGDQILVSLAGQGIPRIDDVVW 382

Query: 419 N--ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
              ER     P + F S      S V                      C  Q + RL   
Sbjct: 383 RGAERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWL 420

Query: 476 VSRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
            S+    ++G+G+       ++   +  FS  +             +  +++N  G    
Sbjct: 421 GSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKS 468

Query: 534 SVTNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
               L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 469 KSAQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|32396673|gb|AAP49294.1| NAD-dependent DNA ligase [Geobacillus thermodenitrificans]
          Length = 121

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 1/118 (0%)

Query: 214 ANPRNAASGILRRL-NPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L +    +R L+ FV+GL    E+  +   E L  ++ LGF VN   
Sbjct: 1   ANPRNAAAGSLRQLESKVAASRQLDLFVYGLANAEELGIESHSEALDYLQALGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
           R+      ++++ NE    R  LPY+IDG+V KVD F+ Q++LG  A+SPRW I++KF
Sbjct: 61  RRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKSPRWAIAYKF 118


>gi|197263258|ref|ZP_03163332.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197241513|gb|EDY24133.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 561

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 131/641 (20%), Positives = 241/641 (37%), Gaps = 118/641 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+ A+G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +  +V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRDRS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
            A  ++G+G+       ++   +  FS        TL      ++ +I N  GF      
Sbjct: 425 SALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSE 472

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            ++   N  R     R+I ++ I    A +  S  + +            ++      W 
Sbjct: 473 QIWRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWR 522

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            L   P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 523 QL---PATGERRAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560


>gi|323189446|gb|EFZ74727.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli RN587/1]
          Length = 561

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 124/592 (20%), Positives = 228/592 (38%), Gaps = 109/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    + 
Sbjct: 24  AWSSARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHRDA 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 84  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++ 
Sbjct: 182 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
                + L+ +   GF +        T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 234 T----DRLKDLATAGFTLT------QTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 283

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 284 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVM 338

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +   ++            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 339 LDDKKVQRVSI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 386

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL     +
Sbjct: 387 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGLK 424

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 425 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 472

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 473 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524


>gi|166226369|sp|Q0SYH4|LIGB_SHIF8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 125/585 (21%), Positives = 229/585 (39%), Gaps = 96/585 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++ 
Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P          ++R     NP T    +         C  Q + RL    S+    ++G
Sbjct: 392 PP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLDG 430

Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+       ++   +  FS  +             +  +++N  G        L+   N
Sbjct: 431 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 478

Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             RN    R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 479 LARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|332750605|gb|EGJ81013.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri 4343-70]
          Length = 556

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 125/585 (21%), Positives = 229/585 (39%), Gaps = 96/585 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 20  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 78

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 79  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 118 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++ 
Sbjct: 177 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 228

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 229 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 282

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 283 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 339

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 340 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 387

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P          ++R     NP T    +         C  Q + RL    S+    ++G
Sbjct: 388 PP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLDG 426

Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+       ++   +  FS  +             +  +++N  G        L+   N
Sbjct: 427 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 474

Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             RN    R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 475 LARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 519


>gi|91213164|ref|YP_543150.1| NAD-dependent DNA ligase LigB [Escherichia coli UTI89]
 gi|117625919|ref|YP_859242.1| NAD-dependent DNA ligase LigB [Escherichia coli APEC O1]
 gi|237703441|ref|ZP_04533922.1| NAD-dependent DNA ligase LigB [Escherichia sp. 3_2_53FAA]
 gi|91074738|gb|ABE09619.1| hypothetical DNA ligase-like protein YicF [Escherichia coli UTI89]
 gi|115515043|gb|ABJ03118.1| NAD-dependent DNA ligase [Escherichia coli APEC O1]
 gi|226902705|gb|EEH88964.1| NAD-dependent DNA ligase LigB [Escherichia sp. 3_2_53FAA]
 gi|294489423|gb|ADE88179.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli IHE3034]
 gi|323949886|gb|EGB45770.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli H252]
 gi|323954950|gb|EGB50729.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli H263]
          Length = 562

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 127/591 (21%), Positives = 228/591 (38%), Gaps = 110/591 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 85  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 228 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 284

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 285 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 339

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 340 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 387

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 388 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 425

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 426 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 473

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQE 583
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q+
Sbjct: 474 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQ 524


>gi|315285425|gb|EFU44870.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 110-3]
 gi|324008103|gb|EGB77322.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 57-2]
          Length = 561

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 127/591 (21%), Positives = 228/591 (38%), Gaps = 110/591 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 25  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 84  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 182 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 227 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 283

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 284 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 338

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 339 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 386

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 387 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 424

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 425 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 472

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQE 583
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q+
Sbjct: 473 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQ 523


>gi|110807676|ref|YP_691196.1| NAD-dependent DNA ligase LigB [Shigella flexneri 5 str. 8401]
 gi|110617224|gb|ABF05891.1| putative enzyme [Shigella flexneri 5 str. 8401]
          Length = 562

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 125/585 (21%), Positives = 229/585 (39%), Gaps = 96/585 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 85  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++ 
Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 234

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 235 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 289 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 346 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 393

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P          ++R     NP T    +         C  Q + RL    S+    ++G
Sbjct: 394 PP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLDG 432

Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+       ++   +  FS  +             +  +++N  G        L+   N
Sbjct: 433 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 480

Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             RN    R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 481 LARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|172044492|sp|A8A6A9|LIGB_ECOHS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDVYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 83  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 232 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 281

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 336

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    +
Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 422

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|168233263|ref|ZP_02658321.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470644|ref|ZP_03076628.1| NAD-dependent DNA ligase adenylation domain [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194457008|gb|EDX45847.1| NAD-dependent DNA ligase adenylation domain [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205332601|gb|EDZ19365.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 561

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 120/563 (21%), Positives = 217/563 (38%), Gaps = 105/563 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASTLNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G    N +   V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTNKYSLAVKNASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
            A  ++G+G+       ++   +  FS        TL      ++ +I N  GF      
Sbjct: 425 SALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSE 472

Query: 537 NLYDSINKRRNISLERFIFSLGI 559
            ++   N  R  S  R+I ++ I
Sbjct: 473 QIWRQFNLARRQSFTRWIMAMDI 495


>gi|218560719|ref|YP_002393632.1| NAD-dependent DNA ligase LigB [Escherichia coli S88]
 gi|166226370|sp|A1AHH8|LIGB_ECOK1 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|166226373|sp|Q1R4U5|LIGB_ECOUT RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737614|sp|B7MFK8|LIGB_ECO45 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218367488|emb|CAR05270.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88]
 gi|307628720|gb|ADN73024.1| NAD-dependent DNA ligase LigB [Escherichia coli UM146]
          Length = 560

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 127/591 (21%), Positives = 228/591 (38%), Gaps = 110/591 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 226 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQE 583
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q+
Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQ 522


>gi|270265241|ref|ZP_06193503.1| DNA ligase B [Serratia odorifera 4Rx13]
 gi|270040875|gb|EFA13977.1| DNA ligase B [Serratia odorifera 4Rx13]
          Length = 567

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 164/376 (43%), Gaps = 63/376 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A   E+ + E+++L+ ++   D  YYQ    +I D  YD+L+++   + H    L R E+
Sbjct: 29  AWRPERLQLEITALKNQLERWDVAYYQQGDSLIEDQVYDSLRQKLQ-LWHRCAGLERVEE 87

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+           L   K  H +    L K+ +   + +++      W           +
Sbjct: 88  PSS---------LLPAGKTPHPVAHTGLHKLADPAAVDQWLRGRSDVW-----------V 127

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  IT+ Y  G+   A  RG+G  GE+    +RAIP IP  +  + P  + ++GE
Sbjct: 128 QPKVDGVAITLVYRDGELAAAVSRGNGLQGENWLEKVRAIPAIPAAVK-DAPATLILQGE 186

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++  N     + + I  G     N R+  +G L +   + + + +  FV         +
Sbjct: 187 LFLMVNG----HQQKIHGG----INARSTVAGALMKNRLSPVLQQIGLFVWA-------W 231

Query: 251 AKGQYEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             G  EM   LQ++  +GFP+     Q  +    V  + E +  R  LP+  DG+V    
Sbjct: 232 PDGPKEMTQRLQQLAAMGFPLALAYSQPVSSLDDVRQWRE-RWYREALPFVTDGVVI--- 287

Query: 308 EFSLQKQLGERARSPR----------WMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
                     +ARSP+          W ++ K+   Q   R+ D++  +GRTG +  V +
Sbjct: 288 ---------HQARSPQGRYWQAKPGDWAVAWKYPPVQQVARVNDVEFSVGRTGKIAVVLK 338

Query: 358 LEPVNIGGALITNATL 373
           L+P+ +    ++   L
Sbjct: 339 LDPLRMDDKWVSRVNL 354


>gi|167549012|ref|ZP_02342771.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205325606|gb|EDZ13445.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 561

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 130/639 (20%), Positives = 240/639 (37%), Gaps = 114/639 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +  +V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A  ++G+G+       ++    F       IF+       ++ +I N LGF       +
Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTLGFAKGKSEQI 474

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +   N  R     R+I ++ I    A +  S  + +            ++      W  L
Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
              P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 525 ---PATGERRAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560


>gi|191170589|ref|ZP_03032142.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli F11]
 gi|190909397|gb|EDV68983.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli F11]
          Length = 562

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 125/592 (21%), Positives = 233/592 (39%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F +  R   
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPR--- 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +  +  + G        V H +    + K+ +   LR ++         ++ N ++  +
Sbjct: 83  -DAMMPPLAG-------TVMHPVAHTGVRKLADKNALRLWM---------REHNDLW--V 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 183 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 228 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 284

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 285 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 339

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 340 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 387

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 388 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 425

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 426 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 473

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 474 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|166226371|sp|Q0TBG2|LIGB_ECOL5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 125/592 (21%), Positives = 233/592 (39%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F +  R   
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPR--- 80

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +  +  + G        V H +    + K+ +   LR ++         ++ N ++  +
Sbjct: 81  -DAMMPPLAG-------TVMHPVAHTGVRKLADKNALRLWM---------REHNDLW--V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 226 PDGPHLMTDRLKDL---ATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|256025622|ref|ZP_05439487.1| NAD-dependent DNA ligase LigB [Escherichia sp. 4_1_40B]
 gi|307140346|ref|ZP_07499702.1| NAD-dependent DNA ligase LigB [Escherichia coli H736]
 gi|315618649|gb|EFU99235.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 3431]
          Length = 560

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 127/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 83  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 232 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 281

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 336

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 422

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|213024747|ref|ZP_03339194.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 175

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 90/149 (60%), Gaps = 4/149 (2%)

Query: 98  LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
           L+ +++ E    F  R+    + K   ++ +  E K+DG  ++I YE G  V AA RGDG
Sbjct: 1   LDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELKLDGLAVSILYENGVLVSAATRGDG 58

Query: 158 HSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216
            +GED+++ +R I  IP ++   NIP  +EVRGEV++ +  F  +N++    G K +ANP
Sbjct: 59  TTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANP 118

Query: 217 RNAASGILRRLNP-TDITRYLNFFVHGLG 244
           RNAA+G LR+L+P     R L FF +G+G
Sbjct: 119 RNAAAGSLRQLDPRITAKRPLTFFCYGVG 147


>gi|157163128|ref|YP_001460446.1| NAD-dependent DNA ligase LigB [Escherichia coli HS]
 gi|157068808|gb|ABV08063.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli HS]
          Length = 562

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDVYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 85  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 234 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 283

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 284 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 338

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 339 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 386

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    +
Sbjct: 387 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 424

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 425 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 472

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 473 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|110643888|ref|YP_671618.1| NAD-dependent DNA ligase LigB [Escherichia coli 536]
 gi|300983472|ref|ZP_07176619.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 200-1]
 gi|110345480|gb|ABG71717.1| hypothetical DNA ligase-like protein YicF [Escherichia coli 536]
 gi|300306936|gb|EFJ61456.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 200-1]
 gi|324012718|gb|EGB81937.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 60-1]
          Length = 561

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 125/592 (21%), Positives = 233/592 (39%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F +  R   
Sbjct: 25  AWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPR--- 81

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +  +  + G        V H +    + K+ +   LR ++         ++ N ++  +
Sbjct: 82  -DAMMPPLAG-------TVMHPVAHTGVRKLADKNALRLWM---------REHNDLW--V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 182 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 227 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 283

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 284 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 338

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 339 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 386

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 387 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 424

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 425 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 472

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 473 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524


>gi|300950021|ref|ZP_07163971.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 116-1]
 gi|300955364|ref|ZP_07167743.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 175-1]
 gi|301644314|ref|ZP_07244316.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 146-1]
 gi|300317736|gb|EFJ67520.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 175-1]
 gi|300450635|gb|EFK14255.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 116-1]
 gi|301077352|gb|EFK92158.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 146-1]
          Length = 561

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 127/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 25  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 84  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 181 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 233 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 282

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 424 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524


>gi|331649461|ref|ZP_08350547.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli M605]
 gi|331041959|gb|EGI14103.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli M605]
          Length = 562

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 127/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 85  MIPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 183 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 228 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 284

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 285 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVM 339

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 340 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 387

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 388 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 425

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 426 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 473

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 474 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|293463971|ref|ZP_06664385.1| DNA ligase B [Escherichia coli B088]
 gi|291321603|gb|EFE61039.1| DNA ligase B [Escherichia coli B088]
          Length = 562

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 127/591 (21%), Positives = 235/591 (39%), Gaps = 108/591 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 85  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 234 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 283

Query: 305 K-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           +   E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +
Sbjct: 284 RGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVML 340

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--E 420
               +    +            G V R    DI  GD++LV  AG+ IP++ D++    E
Sbjct: 341 DDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAE 388

Query: 421 RHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           R     P + F S      S V                      C  Q + RL    S+ 
Sbjct: 389 RTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQ 426

Query: 480 AFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
              ++G+G+       ++   +  FS  +             +  +++N  G        
Sbjct: 427 VLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQ 474

Query: 538 LYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 475 LWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|331644366|ref|ZP_08345495.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H736]
 gi|331655280|ref|ZP_08356279.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli M718]
 gi|331036660|gb|EGI08886.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H736]
 gi|331047295|gb|EGI19373.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli M718]
          Length = 562

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 127/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 85  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 234 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 283

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 284 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 338

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 339 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 386

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 387 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 424

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 425 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 472

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 473 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|218556210|ref|YP_002389123.1| NAD-dependent DNA ligase LigB [Escherichia coli IAI1]
 gi|226737616|sp|B7M4D2|LIGB_ECO8A RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218362978|emb|CAR00615.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1]
          Length = 560

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 127/591 (21%), Positives = 235/591 (39%), Gaps = 108/591 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 83  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 232 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 281

Query: 305 K-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           +   E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +
Sbjct: 282 RGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVML 338

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--E 420
               +    +            G V R    DI  GD++LV  AG+ IP++ D++    E
Sbjct: 339 DDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAE 386

Query: 421 RHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           R     P + F S      S V                      C  Q + RL    S+ 
Sbjct: 387 RTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQ 424

Query: 480 AFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
              ++G+G+       ++   +  FS  +             +  +++N  G        
Sbjct: 425 VLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQ 472

Query: 538 LYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 473 LWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|330909708|gb|EGH38222.1| DNA ligase , LigB [Escherichia coli AA86]
          Length = 560

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 127/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MIPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 226 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVM 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|262045607|ref|ZP_06018626.1| NAD-dependent DNA ligase adenylation domain protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037033|gb|EEW38285.1| NAD-dependent DNA ligase adenylation domain protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 564

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 128/625 (20%), Positives = 250/625 (40%), Gaps = 114/625 (18%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+E S L Q+I    + Y++     + D  YD L  R       FP     +D     
Sbjct: 34  RGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPEDD----- 88

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
                ++        H +    + K+ + + + +++      W           ++PK+D
Sbjct: 89  -----DLPPPTGDARHPVAHTGVRKLADEDSVARWMKNKSDLW-----------IQPKVD 132

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y +G+ V A  RGDG  GE  +A  R IP + +V++  + + + ++GE+++ +
Sbjct: 133 GVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELADSV-LQGELFLRR 191

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           +  +    +  A G     N R   +G++ R +       L+ F+         +  G  
Sbjct: 192 DGHV----QQQAGG----MNARAKVAGLMMRADAAAALSQLDVFIWA-------WPDGPS 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-----KSIRSTLPYDIDGLVYKVDEFS 310
           +M ++ + L      G + +  +   VS   ++     +  RS LP+  DG++ +     
Sbjct: 237 DMRRRQKLL---AQAGFKYSGQYTHPVSRIEQVAQWRQRWYRSPLPFVSDGVIVREG--- 290

Query: 311 LQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             ++   R  SP    W+ + K+       ++  I    GR+G L  VA LE   +    
Sbjct: 291 --REPPGRVWSPGKGEWLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEAQRLDDKR 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH-PD 424
           +    + +    + LD           I VGD++ +  AG+ IP+V  ++    ERH P 
Sbjct: 349 VQRVNVGSVSRWQMLD-----------IGVGDQLQISLAGQGIPRVDAVVWRTAERHKPT 397

Query: 425 AQPFSFPSF-CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P  F +  C            P+               CS Q L RL    S+ A ++
Sbjct: 398 PPPAKFNALTCYFA--------TPE---------------CSEQFLSRLIWLSSKSALDV 434

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + L    + ++P         IF+       +  +++ + G       +L+   +
Sbjct: 435 DGVG-ENLWRVIQQQNPM------THIFSW---LALTVEQLQAVPGISAARGQHLWHQFD 484

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R     R++ ++GI      +A+      L  +N+    + + A +   W +L   P 
Sbjct: 485 LVRKRPFIRWVLAMGIPVPQGALAQ------LESENW----HLLAAKSEAQWRTL---PG 531

Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL 628
           VG+I A+ +V F  +P  +   + L
Sbjct: 532 VGEIRARQLVAFLHHPDVVALAQWL 556


>gi|317050124|ref|YP_004117772.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b]
 gi|316951741|gb|ADU71216.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b]
          Length = 589

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 119/549 (21%), Positives = 213/549 (38%), Gaps = 88/549 (16%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-PDL-ARSEDPNGP 74
           A +E++ L  ++ + DD YY+     + D++YD+L +R     H F PD  A +  P   
Sbjct: 30  AGQEIAQLTTQLRHWDDAYYRQGLNPVSDADYDSLSQRLQQWQHCFTPDQSAYAAQPT-- 87

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
                G  +       H +    + K+    D R  +  +    Q K D      ++PK+
Sbjct: 88  ---TDGSTH-------HPVAHTGVRKL---RDKRAVMEWM----QGKAD----LWVQPKV 126

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  IT+ Y +G       RGDG  GE+  A    IP IP+ ++    E++ ++GE+++ 
Sbjct: 127 DGVAITLVYRQGHLASMLSRGDGWRGEEWRAKASLIPAIPQQIATTQDEVV-LQGELFLQ 185

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
             D     D     G K   N R   +G + R + T +   L  F+          +   
Sbjct: 186 MTDHQQAQD-----GGK---NARAQVAGAMMRRDDTPLLAQLGVFIWAWPDGPVALS--- 234

Query: 255 YEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            E L ++   GF +      + N    + S+ +  +  +  LP+  DG+V  + +  +++
Sbjct: 235 -ERLAQLSRWGFGLTARWSERVNNEDEVASWRD--RWFQGKLPFVTDGIV--IHQSPVRR 289

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
               +     W  + K+   + S+ +  +   IGRTG +  V  L PV +    +    +
Sbjct: 290 GRDWQPGQGEWSAAWKYQPAEVSSEVRSVAFNIGRTGKIAVVLNLIPVQLDDKTVRRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER-HPDAQPFSF 430
            +    + L           D+  GD+V +  AG+ IP+V  +I  V +R +PDA     
Sbjct: 350 GSLRRWREL-----------DVIAGDQVTLALAGQGIPRVERVIWRVAQRDYPDA----- 393

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
                           P++         T    C AQ L RL     +   +I G+ +  
Sbjct: 394 ----------------PQSDDFNQLSCLTFSPPCRAQFLSRLSWLSEKSVLDISGIQRST 437

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 S            I  L      +  +I  + G        ++   N+ R   L
Sbjct: 438 WQRLLDS----------GTISHLFSWLALTPEQIAQVAGISPARAQQIWHRFNQTRQQPL 487

Query: 551 ERFIFSLGI 559
            R++ +LG+
Sbjct: 488 RRWVMALGL 496


>gi|162139527|ref|YP_218649.2| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224585537|ref|YP_002639336.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|166226375|sp|Q57I94|LIGB_SALCH RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|254809146|sp|C0Q1X9|LIGB_SALPC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|224470065|gb|ACN47895.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|322716720|gb|EFZ08291.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 561

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 130/639 (20%), Positives = 239/639 (37%), Gaps = 114/639 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G    N +   V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A  ++G+G+       ++    F       IF+       ++ +I N  GF       +
Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +   N  R     R+I ++ I    A +  S  + +            ++      W  L
Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
              P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 525 ---PATGERRAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560


>gi|293417108|ref|ZP_06659735.1| DNA ligase [Escherichia coli B185]
 gi|291431139|gb|EFF04132.1| DNA ligase [Escherichia coli B185]
          Length = 562

 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 127/590 (21%), Positives = 233/590 (39%), Gaps = 100/590 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 85  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++
Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 234 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 287

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 288 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 344

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 345 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 392

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 393 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 430

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 431 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 478

Query: 542 INKRRNISLERFIFSLGIR----HVGAEIARSLAKYYLSYQNFAQEINNI 587
            N+ R     R++ ++GI      + A   RS ++  +S + F Q++  I
Sbjct: 479 FNQARKQPFTRWVMAMGIPLTRVALNASDERSWSQLLVSTEQFWQQLPGI 528


>gi|157149264|ref|YP_001456583.1| NAD-dependent DNA ligase LigB [Citrobacter koseri ATCC BAA-895]
 gi|157086469|gb|ABV16147.1| hypothetical protein CKO_05104 [Citrobacter koseri ATCC BAA-895]
          Length = 576

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 127/625 (20%), Positives = 247/625 (39%), Gaps = 125/625 (20%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +A  E++ L+Q+++  +D Y+Q     + DS YD L  +       F         
Sbjct: 41  WSPARANDEIARLQQQLAQWNDSYWQQGVSAVDDSVYDQLSAQLVQWQRCF--------- 91

Query: 72  NGPLNKIGGEMNLSLF-----KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
                  GG+    L       + H +P   + K+ + + +++++ +    W        
Sbjct: 92  -------GGDTGAELAPPVSGSLPHPVPHTGVRKLADKQAVQQWMRKRSDLW-------- 136

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              ++PK+DG  +T+ Y  G+ V A  RG+G  GED +  +R IP +P+     +     
Sbjct: 137 ---VQPKVDGVAVTLVYRDGRLVSAISRGNGLKGEDWTQKVRLIPAVPQSTKGALANST- 192

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           ++GE+++  ++   +  +M  +      N R+  +G++ R N T   + L+ F+      
Sbjct: 193 LQGEIFLLHDNH--IQRQMGGM------NARSKVAGMMMRQNNTSSLQSLSVFIWA---- 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST-----LPYDIDG 301
              +  G   M +++R L      G   A  +   V   ++++ +R+      LP+  DG
Sbjct: 241 ---WPDGPATMPERLRQLS---GAGFGFAQQYSQPVKSADDVERVRTAWWTTGLPFVTDG 294

Query: 302 LVYKVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           +V +       K+   R   P    W+++ K+        +  +   +G++G ++ VA L
Sbjct: 295 VVVRTG-----KEPEARHWMPGQGDWLVAWKYPPVAKVAEVTGVQFAVGKSGKISVVASL 349

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417
            PV +           ++  +K ++  G V R    DI  GD +LV  AG+ IP++  ++
Sbjct: 350 APVML-----------DDKRVKRVNV-GSVRRWEEWDIAPGDHILVSLAGQGIPRIDKVV 397

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFV 476
                                    RD     G    A  C      C  Q + RL    
Sbjct: 398 WRSTQ--------------------RDKPAPPGNRYNALTCFYATEVCQEQFIARLVWLG 437

Query: 477 SRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           S++A  ++G+G+       ++   +  FS         L + Q  +T       GF    
Sbjct: 438 SKEALEVDGMGEAGWRVLHQAHRFEHIFS------WLALTQEQLQATP------GFSKEK 485

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L+   N  R+    R++ ++GI          L +  L   N  +    ++A   + 
Sbjct: 486 SKQLWHQFNLVRHRPFIRWVMAMGI---------PLTQGALK-ANGDRSWGQLLARTAEY 535

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNP 619
           W  L   P  G+  A+ ++++  NP
Sbjct: 536 WQQL---PTTGEGRARRVIQWRDNP 557


>gi|306816005|ref|ZP_07450143.1| NAD-dependent DNA ligase LigB [Escherichia coli NC101]
 gi|305850401|gb|EFM50858.1| NAD-dependent DNA ligase LigB [Escherichia coli NC101]
          Length = 560

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 125/592 (21%), Positives = 233/592 (39%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R   
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR--- 80

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +  +  + G        V H +    + K+ +   LR ++         ++ N ++  +
Sbjct: 81  -DVMMPPLAG-------TVMHPVAHTGVRKLADKNALRLWM---------REHNDLW--V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV         +
Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 226 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNTDEVAHVRNEWWKAKLPFVTDGVVVR 282

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVM 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|170018123|ref|YP_001723077.1| NAD-dependent DNA ligase LigB [Escherichia coli ATCC 8739]
 gi|253771511|ref|YP_003034342.1| NAD-dependent DNA ligase LigB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163575|ref|YP_003046683.1| NAD-dependent DNA ligase LigB [Escherichia coli B str. REL606]
 gi|312972067|ref|ZP_07786241.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 1827-70]
 gi|189046590|sp|B1IYV3|LIGB_ECOLC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|169753051|gb|ACA75750.1| DNA ligase (NAD(+)) [Escherichia coli ATCC 8739]
 gi|242379171|emb|CAQ33973.1| DNA ligase [Escherichia coli BL21(DE3)]
 gi|253322555|gb|ACT27157.1| DNA ligase (NAD(+)) [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975476|gb|ACT41147.1| NAD-dependent DNA ligase LigB [Escherichia coli B str. REL606]
 gi|253979632|gb|ACT45302.1| NAD-dependent DNA ligase LigB [Escherichia coli BL21(DE3)]
 gi|310334444|gb|EFQ00649.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 1827-70]
 gi|323959895|gb|EGB55543.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli H489]
 gi|323971289|gb|EGB66534.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli TA007]
          Length = 560

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 83  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 232 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 281

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 336

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    +
Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 422

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|89110365|ref|AP_004145.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111628|ref|NP_418104.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|170083154|ref|YP_001732474.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238902738|ref|YP_002928534.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|401583|sp|P25772|LIGB_ECOLI RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737617|sp|B1X980|LIGB_ECODH RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|259494925|sp|C4ZXN9|LIGB_ECOBW RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|85676396|dbj|BAE77646.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr.
           W3110]
 gi|87082305|gb|AAC76671.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|169890989|gb|ACB04696.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238860823|gb|ACR62821.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|260447334|gb|ACX37756.1| DNA ligase (NAD(+)) [Escherichia coli DH1]
 gi|309704049|emb|CBJ03395.1| putative DNA ligase [Escherichia coli ETEC H10407]
 gi|315138229|dbj|BAJ45388.1| NAD-dependent DNA ligase LigB [Escherichia coli DH1]
 gi|332345636|gb|AEE58970.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 560

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 83  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 232 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 281

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 336

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    +
Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 422

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|283787721|ref|YP_003367586.1| DNA ligase [Citrobacter rodentium ICC168]
 gi|282951175|emb|CBG90867.1| putative DNA ligase [Citrobacter rodentium ICC168]
          Length = 560

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 125/552 (22%), Positives = 214/552 (38%), Gaps = 86/552 (15%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +A++E+S L Q+I+  DD Y++  K  I D  YD L+ R       F      +  
Sbjct: 24  WSSARAQEEISRLRQQIARWDDDYWKKGKSAIEDGVYDQLRTRLGDWQRCFG----GDAT 79

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
              L  IGG        V H +    ++K+ +   L++++         +DD      ++
Sbjct: 80  PALLPAIGG-------TVAHPVAHTGVKKLTDKRALQQWMA-------GRDD----LWVQ 121

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +T+ Y  G+   A  RGDG  GED +A ++ I  +P+ ++  +   + ++GE+
Sbjct: 122 PKVDGVAVTLVYRNGRLTRAISRGDGLKGEDWTAKVQQIAAVPQTVTGGLANSV-LQGEI 180

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           +  ++  +        +G K   N R   +G+L R   T        F+       +  A
Sbjct: 181 FWPQDRHIQQK-----MGGK---NARAKVAGLLMRRETTSEIASQGIFIWAWPDGPQSMA 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +   ++ Q    L       V+ A       S++       S LP+  DG+V +      
Sbjct: 233 EKVTQLSQAGFTLTERFTLAVKNAQEVERARSHWWS-----SGLPFVTDGVVVRTG---- 283

Query: 312 QKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            K+ G R   P    W+ + K+        +  I   +G++G +  VA L PV +    +
Sbjct: 284 -KEPGARYWLPGQGNWLAAWKYPSVAQVAEVTAIRFMVGKSGKIAAVATLMPVMLDDKRV 342

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
               L            G V R    DI  GD++L+  AG+ IP+ +D +V       +P
Sbjct: 343 QRVNL------------GSVRRWQEWDIAPGDQILISLAGQGIPR-IDKVVWRGVDRTKP 389

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                              P   +  A        AC  Q + RL    SR   +IEG G
Sbjct: 390 V------------------PPKDRFNALTCFYATDACQEQFISRLAWVGSRGVLDIEGTG 431

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       +     F+        TL++ Q T         GF       L+   N  R 
Sbjct: 432 EAGWRALHQHHH--FAHIFSWLGLTLEQIQLTP--------GFTKARGEKLWHQFNLARK 481

Query: 548 ISLERFIFSLGI 559
              +R++ ++GI
Sbjct: 482 KPFKRWLLAMGI 493


>gi|166226376|sp|A8ARN4|LIGB_CITK8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 127/625 (20%), Positives = 247/625 (39%), Gaps = 125/625 (20%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            S  +A  E++ L+Q+++  +D Y+Q     + DS YD L  +       F         
Sbjct: 25  WSPARANDEIARLQQQLAQWNDSYWQQGVSAVDDSVYDQLSAQLVQWQRCF--------- 75

Query: 72  NGPLNKIGGEMNLSLF-----KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
                  GG+    L       + H +P   + K+ + + +++++ +    W        
Sbjct: 76  -------GGDTGAELAPPVSGSLPHPVPHTGVRKLADKQAVQQWMRKRSDLW-------- 120

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              ++PK+DG  +T+ Y  G+ V A  RG+G  GED +  +R IP +P+     +     
Sbjct: 121 ---VQPKVDGVAVTLVYRDGRLVSAISRGNGLKGEDWTQKVRLIPAVPQSTKGALANST- 176

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           ++GE+++  ++   +  +M  +      N R+  +G++ R N T   + L+ F+      
Sbjct: 177 LQGEIFLLHDNH--IQRQMGGM------NARSKVAGMMMRQNNTSSLQSLSVFIWA---- 224

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST-----LPYDIDG 301
              +  G   M +++R L      G   A  +   V   ++++ +R+      LP+  DG
Sbjct: 225 ---WPDGPATMPERLRQLS---GAGFGFAQQYSQPVKSADDVERVRTAWWTTGLPFVTDG 278

Query: 302 LVYKVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           +V +       K+   R   P    W+++ K+        +  +   +G++G ++ VA L
Sbjct: 279 VVVRTG-----KEPEARHWMPGQGDWLVAWKYPPVAKVAEVTGVQFAVGKSGKISVVASL 333

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417
            PV +           ++  +K ++  G V R    DI  GD +LV  AG+ IP++  ++
Sbjct: 334 APVML-----------DDKRVKRVNV-GSVRRWEEWDIAPGDHILVSLAGQGIPRIDKVV 381

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFV 476
                                    RD     G    A  C      C  Q + RL    
Sbjct: 382 WRSTQ--------------------RDKPAPPGNRYNALTCFYATEVCQEQFIARLVWLG 421

Query: 477 SRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           S++A  ++G+G+       ++   +  FS         L + Q  +T       GF    
Sbjct: 422 SKEALEVDGMGEAGWRVLHQAHRFEHIFS------WLALTQEQLQATP------GFSKEK 469

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L+   N  R+    R++ ++GI          L +  L   N  +    ++A   + 
Sbjct: 470 SKQLWHQFNLVRHRPFIRWVMAMGI---------PLTQGALK-ANGDRSWGQLLARTAEY 519

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNP 619
           W  L   P  G+  A+ ++++  NP
Sbjct: 520 WQQL---PTTGEGRARRVIQWRDNP 541


>gi|300919785|ref|ZP_07136260.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 115-1]
 gi|300413138|gb|EFJ96448.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 115-1]
          Length = 561

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 25  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 84  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 181 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 233 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 282

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    +
Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 423

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 424 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524


>gi|206576543|ref|YP_002235985.1| NAD(+)-dependent DNA ligase LigB [Klebsiella pneumoniae 342]
 gi|257096557|sp|B5XTF0|LIGB_KLEP3 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|206565601|gb|ACI07377.1| NAD(+)-dependent DNA ligase LigB [Klebsiella pneumoniae 342]
          Length = 558

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 133/622 (21%), Positives = 246/622 (39%), Gaps = 108/622 (17%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+E+S L Q+I    + Y++     + D  YD L  R       FP     +D   P 
Sbjct: 28  RGRQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLAQWRQCFPGTTPEDDDLPP- 86

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFTLEPKI 134
                    +   V H+              +RK    +    W K   N     ++PK+
Sbjct: 87  -----PTGDARHPVAHT-------------GVRKLADEVSVAHWMK---NKTDLWIQPKV 125

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+ Y +G  V A  RGDG  GE  +A  R IP + +V +  +   + ++GE+++ 
Sbjct: 126 DGVAVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKVTTGELANSV-LQGELFLR 184

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           ++  +    +  A G     N R   +G++ R +       L+ F+         +  G 
Sbjct: 185 RDGHV----QQQAGG----MNARAKVAGLMMRADAAAALSQLDVFIWA-------WPDGP 229

Query: 255 YEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            +M ++ + L   GF  +       T    V+ + + +  RS LP+  DG++ +      
Sbjct: 230 SDMRRRQQLLTQAGFKYSGQYTHPVTRVEQVAQWRQ-RWYRSPLPFVSDGVIVREG---- 284

Query: 312 QKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++   RA SP    W+ + K+        +  I    GR+G L  VA+LEP  +    +
Sbjct: 285 -REPPGRAWSPGKGEWLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQ 426
               + +    + LD           I VGD++ +  AG+ IP++  ++    ERH   +
Sbjct: 344 QRVNVGSVARWQALD-----------IGVGDQLQISLAGQGIPRIDAVVWRTAERH---K 389

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P                   P   K  A         CS Q L RL    S+ A +++G+
Sbjct: 390 P------------------TPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGV 431

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + L    + ++P         IF+       +  +++ + G       +L+   +  R
Sbjct: 432 G-EHLWRAIQQQNPM------THIFSW---LALTVEQLQAVPGISAARGQHLWHQFDLVR 481

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                R++ ++G+      +A+      L  +N+    + + A +   W +L   P VG+
Sbjct: 482 KRPFIRWVLAMGLPVPQGALAQ------LESENW----HLLAAKSEAQWRAL---PGVGE 528

Query: 607 IIAQAIVEFYQNPRNICAVEAL 628
           I A+ +V F  +P  +   + L
Sbjct: 529 IRARQLVAFLHHPDVVALAQWL 550


>gi|194435653|ref|ZP_03067756.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli 101-1]
 gi|194425196|gb|EDX41180.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli 101-1]
          Length = 562

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 85  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 234 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 283

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 284 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 338

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 339 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 386

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    +
Sbjct: 387 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 424

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 425 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 472

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 473 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|16767024|ref|NP_462639.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|81853648|sp|Q8ZL42|LIGB_SALTY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|16422307|gb|AAL22598.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|312914765|dbj|BAJ38739.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 561

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 120/564 (21%), Positives = 214/564 (37%), Gaps = 107/564 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
            + PLN        ++  V H+              +RK + R     W +         
Sbjct: 84  VSPPLN------GTTMHPVAHT-------------GVRKLVDRQAVEQWMRGRSE---LW 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++G
Sbjct: 122 VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +   +          R    N R+  +G+L R +       L  F+         
Sbjct: 181 EIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA------- 225

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
           +  G   M +++  L      G    N +   V   +E++  R     S LP+  DG+V 
Sbjct: 226 WPDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVI 282

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           ++ +    +    R     W+ + K+       ++  I   +G++G +T VA L PV + 
Sbjct: 283 RMAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILD 340

Query: 365 GALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH- 422
              +    +            G V R    DI  GD++LV  AG+ IP++ +++   R  
Sbjct: 341 DKRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRER 388

Query: 423 -----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
                PD+   S   F                              C  Q + RL    S
Sbjct: 389 SKPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLIWLGS 423

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           R A  ++G+G+       ++   +  FS        TL      ++ +I N  GF     
Sbjct: 424 RSALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKS 471

Query: 536 TNLYDSINKRRNISLERFIFSLGI 559
             ++   N  R     R+I ++ I
Sbjct: 472 EQIWRQFNLARRQPFTRWIMAMDI 495


>gi|168464952|ref|ZP_02698844.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195632322|gb|EDX50806.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 561

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 130/641 (20%), Positives = 240/641 (37%), Gaps = 118/641 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +  +V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
            A  ++G+G+       ++   +  FS        TL      ++ +I N  GF      
Sbjct: 425 SALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSE 472

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            ++   N  R     R+I ++ I    A +  S  + +            ++      W 
Sbjct: 473 QIWRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWR 522

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            L   P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 523 QL---PATGERRAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560


>gi|183597041|ref|ZP_02958534.1| hypothetical protein PROSTU_00276 [Providencia stuartii ATCC 25827]
 gi|188023700|gb|EDU61740.1| hypothetical protein PROSTU_00276 [Providencia stuartii ATCC 25827]
          Length = 570

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 195/454 (42%), Gaps = 74/454 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            LS ++ +KE   L +++   +  Y       + D  YD L        + +    + ++
Sbjct: 43  TLSQDELKKESQKLGEQLQQWNRLYRLSGNSPVTDETYDQL-------LNTWQQWQKCQN 95

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +G L  I   +      V H I    L+K+ N  D+ K+I      W           L
Sbjct: 96  LSGQLPPI--HLPPHSRTVKHPIVHTGLKKL-NEVDIGKWIDTREEVW-----------L 141

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  I++ Y++GK V    RG+G  G +       IP IP+ L  + P++I ++GE
Sbjct: 142 QPKVDGVAISLVYQQGKLVSMISRGNGIEGLEWRDKADFIPAIPKQLPTSQPQLI-LQGE 200

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASG-ILRRLNPTDITRYLNFFV----HGLGK 245
           ++    D    + +  + G     N RN  +G ++R+  P      ++ F+     G+GK
Sbjct: 201 LFWRLKD----HRQQASGG----VNARNQVAGWLMRKSKPVTPEANIDVFIWAWPEGVGK 252

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV----SYYNEMKSIRSTLPYDIDG 301
             E +        +++  LGFP+        T    V    SYY +       +P+  DG
Sbjct: 253 AEEQW--------RQLANLGFPLTQQYSHKVTTMAQVKKWQSYYYQ-----QPMPFATDG 299

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K   F   +    +     W ++ K    + ++++ D+  ++GRTG ++ VA +EPV
Sbjct: 300 IVLK--SFPTPRVAAWQVNHNSWSVAWKHPYTRIASKVTDLHFRVGRTGAVSVVAEIEPV 357

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VN 419
            +    ++        Y+  L +  K     +D+ VGD + V  AG  IPK+  +I  + 
Sbjct: 358 ELDSKKVSRL------YLGSLKSWQK-----KDLLVGDTIQVALAGHGIPKLESVIWRLQ 406

Query: 420 ER-HPDAQPF------SFPSFCPICQSRVVRDLN 446
           +R +PD   F      S     P C+ + V  LN
Sbjct: 407 QRTYPDLSQFKQFHALSCFVMTPQCEQQFVARLN 440


>gi|254038848|ref|ZP_04872900.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|290497|gb|AAA62000.1| f562 [Escherichia coli]
 gi|226838813|gb|EEH70840.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
          Length = 562

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 85  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 234 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 283

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 284 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 338

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 339 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 386

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    +
Sbjct: 387 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 424

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 425 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 472

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 473 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|218697368|ref|YP_002405035.1| NAD-dependent DNA ligase LigB [Escherichia coli 55989]
 gi|300923458|ref|ZP_07139498.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 182-1]
 gi|301325330|ref|ZP_07218837.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 78-1]
 gi|307314268|ref|ZP_07593876.1| DNA ligase (NAD(+)) [Escherichia coli W]
 gi|254809144|sp|B7L771|LIGB_ECO55 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218354100|emb|CAV00658.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989]
 gi|300420285|gb|EFK03596.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 182-1]
 gi|300847857|gb|EFK75617.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 78-1]
 gi|306906091|gb|EFN36610.1| DNA ligase (NAD(+)) [Escherichia coli W]
 gi|315062935|gb|ADT77262.1| DNA ligase, NAD(+)-dependent [Escherichia coli W]
 gi|323376472|gb|ADX48740.1| DNA ligase (NAD(+)) [Escherichia coli KO11]
 gi|324116014|gb|EGC09940.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli E1167]
          Length = 560

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 100/587 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 83  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 232 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 286 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 342

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 390

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 391 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 428

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 429 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 476

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 477 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|167995212|ref|ZP_02576302.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205327077|gb|EDZ13841.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261248887|emb|CBG26741.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996002|gb|ACY90887.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160276|emb|CBW19799.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|321226792|gb|EFX51842.1| DNA ligase, LigB [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323132100|gb|ADX19530.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990588|gb|AEF09571.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 561

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 119/563 (21%), Positives = 216/563 (38%), Gaps = 105/563 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G    N +   V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLIWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
            A  ++G+G+       ++   +  FS        TL      ++ +I N  GF      
Sbjct: 425 SALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSE 472

Query: 537 NLYDSINKRRNISLERFIFSLGI 559
            ++   N  R     R+I ++ I
Sbjct: 473 QIWRQFNLARRQPFTRWIMAMDI 495


>gi|301028426|ref|ZP_07191672.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 196-1]
 gi|299878537|gb|EFI86748.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 196-1]
          Length = 560

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 125/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W            
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMVDKNALSLWMRERSDLWG----------- 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
           +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 233 S----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVR 282

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471

Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 472 QLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|166226367|sp|Q3YW09|LIGB_SHISS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 133/623 (21%), Positives = 239/623 (38%), Gaps = 121/623 (19%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 83  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++
Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 + L+++   GF +     R       I    NE    ++ LP+  DG+V +   
Sbjct: 232 MT----DRLKELATAGFTLTQRYTRAVKNADEIARVRNEW--WKAKLPFVTDGVVVRA-- 283

Query: 309 FSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
               K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV +  
Sbjct: 284 ---AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDD 340

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERH 422
             +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER 
Sbjct: 341 KKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERT 388

Query: 423 PDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               P + F S      S V                      C  Q + RL    S+   
Sbjct: 389 KPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVL 426

Query: 482 NIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
            ++G+G+       ++   +  FS  +             +  +++N  G        L+
Sbjct: 427 GLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLW 474

Query: 540 DSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
              N  R     R++ ++GI      + A   RS ++   S + F Q             
Sbjct: 475 HQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQ------------- 521

Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618
               R+P  G   A+ ++E+ +N
Sbjct: 522 ----RLPGTGSGRARQVIEWKEN 540


>gi|300815113|ref|ZP_07095338.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 107-1]
 gi|300532005|gb|EFK53067.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 107-1]
          Length = 560

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 100/587 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 83  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 232 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 286 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 342

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 VQRVNI------------GSVRRWEEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 390

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 391 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 428

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 429 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 476

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 477 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|323939593|gb|EGB35799.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli E482]
          Length = 562

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 124/593 (20%), Positives = 231/593 (38%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 85  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N     +G++ R + +D    L  FV       ++
Sbjct: 182 EIFLQREGH--IQQQMGGI------NAHAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 234 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 283

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 284 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 338

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII--- 417
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 339 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 386

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
                P     SF S      S V                      C  Q + RL    +
Sbjct: 387 AERTKPTPPENSFNSLTCYFASDV----------------------CQEQFISRLVWLGA 424

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 425 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 472

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 473 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|323934808|gb|EGB31190.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli E1520]
          Length = 560

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 127/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 83  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +     +A      V   +E+  +R     + LP+  DG+V 
Sbjct: 232 MS----DRLKELATAGFTLTQRYTRA------VKNADEVARVRNDWWKAELPFVTDGVVV 281

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 336

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 422

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|74314119|ref|YP_312538.1| NAD-dependent DNA ligase LigB [Shigella sonnei Ss046]
 gi|73857596|gb|AAZ90303.1| putative enzyme [Shigella sonnei Ss046]
          Length = 562

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 133/623 (21%), Positives = 239/623 (38%), Gaps = 121/623 (19%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 85  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++
Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 + L+++   GF +     R       I    NE    ++ LP+  DG+V +   
Sbjct: 234 MT----DRLKELATAGFTLTQRYTRAVKNADEIARVRNEW--WKAKLPFVTDGVVVRA-- 285

Query: 309 FSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
               K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV +  
Sbjct: 286 ---AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDD 342

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERH 422
             +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER 
Sbjct: 343 KKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERT 390

Query: 423 PDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               P + F S      S V                      C  Q + RL    S+   
Sbjct: 391 KPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVL 428

Query: 482 NIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
            ++G+G+       ++   +  FS  +             +  +++N  G        L+
Sbjct: 429 GLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLW 476

Query: 540 DSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
              N  R     R++ ++GI      + A   RS ++   S + F Q             
Sbjct: 477 HQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQ------------- 523

Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618
               R+P  G   A+ ++E+ +N
Sbjct: 524 ----RLPGTGSGRARQVIEWKEN 542


>gi|198244266|ref|YP_002217699.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|226737621|sp|B5FM71|LIGB_SALDC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|197938782|gb|ACH76115.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326625484|gb|EGE31829.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 561

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 130/639 (20%), Positives = 239/639 (37%), Gaps = 114/639 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+ A+G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +   V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLAVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A  ++G+G+       ++    F       IF+       ++ +I N  GF       +
Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +   N  R     R+I ++ I    A +  S  + +            ++      W  L
Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
              P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 525 ---PATGERRAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560


>gi|171855259|sp|A7ZTJ9|LIGB_ECO24 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 100/587 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 83  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 232 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 286 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 342

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 390

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 391 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 428

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 429 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 476

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 477 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|168235353|ref|ZP_02660411.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194734322|ref|YP_002116682.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|226737627|sp|B4TZZ8|LIGB_SALSV RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|194709824|gb|ACF89045.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291581|gb|EDY30933.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 561

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 130/635 (20%), Positives = 242/635 (38%), Gaps = 118/635 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +   V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A  ++G+G+       ++    F       IF+       ++ +I N  GF       +
Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +   N  R  S  R+I ++ I    A +  S  + +            ++      W  L
Sbjct: 475 WRQFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
              P  G+  A  ++++  NP+    ++AL + +S
Sbjct: 525 ---PATGERRAGRVIDWRDNPQ----IKALSRWLS 552


>gi|300822417|ref|ZP_07102557.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 119-7]
 gi|309797611|ref|ZP_07691999.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 145-7]
 gi|300525064|gb|EFK46133.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 119-7]
 gi|308118798|gb|EFO56060.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 145-7]
          Length = 561

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 100/587 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 25  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 84  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 181 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 233 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 286

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 287 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 391

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 392 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 429

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 430 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 477

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 478 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524


>gi|300927922|ref|ZP_07143481.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 187-1]
 gi|300464014|gb|EFK27507.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 187-1]
          Length = 561

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 125/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 25  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 84  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 181 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 233 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 282

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + R+    +
Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRVVWLGA 423

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 424 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524


>gi|191167813|ref|ZP_03029619.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B7A]
 gi|190902156|gb|EDV61899.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B7A]
          Length = 562

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 100/587 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 85  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 123 VQPKVDGVAVTMVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 234 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 287

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 288 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 344

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 345 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 392

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 393 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 430

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 431 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 478

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 479 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|193063789|ref|ZP_03044876.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E22]
 gi|192930504|gb|EDV83111.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E22]
          Length = 577

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 124/586 (21%), Positives = 227/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 41  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 99

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 100 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 138

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 139 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 197

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 198 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 249

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 250 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 303

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 304 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 361 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 408

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 409 PPENRFNSLTCYFASEV----------------------CQEQFISRLVWLGSKQVLGLD 446

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 447 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 494

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 495 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 540


>gi|204928646|ref|ZP_03219845.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204322079|gb|EDZ07277.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 561

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 127/639 (19%), Positives = 236/639 (36%), Gaps = 114/639 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN              H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLNGT----------TRHPVAHTGVRKLVDRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +   V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLAVKNASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVMLDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A  ++G+G+       ++    F       IF+       ++ +I N  GF       +
Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +   N  R     R+I ++ I    A +  S  + +            ++      W  L
Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
              P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 525 ---PSTGERRAGRVIDWRDNPQIKALSRWLAAQHIPGFG 560


>gi|32396688|gb|AAP49300.1| NAD-dependent DNA ligase [Bacillus circulans]
          Length = 121

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 1/118 (0%)

Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+P    +R+L+ FV+ L    E+        L  ++ LGF VN   
Sbjct: 1   ANPRNAAAGSLRQLDPKIAASRHLDLFVYSLANAEELGIDSHSAALDYLQTLGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
           R+      ++ + +E    RS LPYDIDG+V KVD F  Q+ +G  A+SPRW I++KF
Sbjct: 61  RRCANIDEVIRFVSEWHEKRSHLPYDIDGIVIKVDSFEQQESVGATAKSPRWAIAYKF 118


>gi|157158891|ref|YP_001465128.1| NAD-dependent DNA ligase LigB [Escherichia coli E24377A]
 gi|331670488|ref|ZP_08371327.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA271]
 gi|331679739|ref|ZP_08380409.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H591]
 gi|157080921|gb|ABV20629.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E24377A]
 gi|331062550|gb|EGI34470.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA271]
 gi|331072911|gb|EGI44236.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H591]
          Length = 562

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 100/587 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 85  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 234 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 287

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 288 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 344

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 345 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 392

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 393 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 430

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 431 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 478

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 479 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|260857958|ref|YP_003231849.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|260870377|ref|YP_003236779.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
 gi|257756607|dbj|BAI28109.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|257766733|dbj|BAI38228.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
          Length = 560

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 124/586 (21%), Positives = 227/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 392 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 430 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 477

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 478 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|260846568|ref|YP_003224346.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
 gi|257761715|dbj|BAI33212.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
          Length = 560

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 124/586 (21%), Positives = 227/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 392 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 430 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 477

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 478 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|161616820|ref|YP_001590785.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|189046593|sp|A9MVP4|LIGB_SALPB RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|161366184|gb|ABX69952.1| hypothetical protein SPAB_04639 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 561

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 125/622 (20%), Positives = 235/622 (37%), Gaps = 114/622 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN        ++  V H+     + K+ + + + +++      W           +
Sbjct: 84  VSPPLN------GTTMHPVAHT----GVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +   V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLAVKNASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A  ++G+G+       ++    F       IF+       ++ +I N  GF       +
Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +   N  R     R+I ++ I    A +  S  + +            ++      W  L
Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524

Query: 599 IRVPLVGDIIAQAIVEFYQNPR 620
              P  G+  A  ++++  NP+
Sbjct: 525 ---PATGERRAGRVIDWRDNPQ 543


>gi|194430072|ref|ZP_03062577.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B171]
 gi|194411899|gb|EDX28216.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B171]
          Length = 577

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 124/586 (21%), Positives = 227/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 41  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 99

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 100 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 138

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 139 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 197

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 198 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 249

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 250 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 303

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 304 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 361 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 408

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 409 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 446

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 447 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 494

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 495 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 540


>gi|238910220|ref|ZP_04654057.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 561

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 124/621 (19%), Positives = 233/621 (37%), Gaps = 112/621 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +   V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLAVKNASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH--- 422
             +    + +    K             DI  GD++LV  AG+ IP++ +++   R    
Sbjct: 342 KRVQRVNIGSVKRWKAW-----------DIAPGDQILVSLAGQGIPRLDEVVWRSRERSK 390

Query: 423 ---PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
              PD+   S   F                              C  Q + RL    SR 
Sbjct: 391 PVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSRS 425

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A  ++G+G+       ++    F       IF+       ++ +I N  GF       ++
Sbjct: 426 ALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQIW 475

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
              N  R     R+I ++ I    A +  S  + +            ++      W  L 
Sbjct: 476 RQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL- 524

Query: 600 RVPLVGDIIAQAIVEFYQNPR 620
             P  G+  A  ++++  NP+
Sbjct: 525 --PATGERRAGRVIDWRNNPQ 543


>gi|188492181|ref|ZP_02999451.1| putative DNA ligase domain protein [Escherichia coli 53638]
 gi|188487380|gb|EDU62483.1| putative DNA ligase domain protein [Escherichia coli 53638]
          Length = 562

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 126/587 (21%), Positives = 230/587 (39%), Gaps = 100/587 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 85  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++
Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 234 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 287

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 288 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 344

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 345 VQQVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 392

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 393 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 430

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 431 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 478

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 479 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|194449070|ref|YP_002047770.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|226737624|sp|B4T9Z1|LIGB_SALHS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|194407374|gb|ACF67593.1| NAD-dependent DNA ligase domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
          Length = 561

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 125/622 (20%), Positives = 236/622 (37%), Gaps = 114/622 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN        ++  V H+     + K+ + + + +++      W           +
Sbjct: 84  VSPPLN------GTTMHPVAHT----GVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLLYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +  +V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A  ++G+G+       ++    F       IF+       ++ +I N  GF       +
Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +   N  R     R+I ++ I    A +  S  + +            ++      W  L
Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524

Query: 599 IRVPLVGDIIAQAIVEFYQNPR 620
              P  G+  A  ++++  NP+
Sbjct: 525 ---PATGERRAGRVIDWRDNPQ 543


>gi|288932991|ref|YP_003437050.1| DNA ligase (NAD(+)) [Klebsiella variicola At-22]
 gi|288887720|gb|ADC56038.1| DNA ligase (NAD(+)) [Klebsiella variicola At-22]
          Length = 558

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 132/622 (21%), Positives = 245/622 (39%), Gaps = 108/622 (17%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+E+S L Q+I    + Y++     + D  YD L  R       FP     +D   P 
Sbjct: 28  RGRQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLTQWRQCFPGATPEDDDLPP- 86

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFTLEPKI 134
                    +   V H+              +RK    +    W K   N     ++PK+
Sbjct: 87  -----PTGDARHPVAHT-------------GVRKLADEVSVAHWMK---NKTDLWIQPKV 125

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+ Y +G  V A  RGDG  GE  +A  R IP + +V +  +   + ++GE+++ 
Sbjct: 126 DGVAVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKVTTGELANSV-LQGELFLR 184

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           ++  +    +  A G     N R   +G++ R +       L+ F+         +  G 
Sbjct: 185 RDGHV----QQQAGG----MNARAKVAGLMMRADAAAALSQLDVFIWA-------WPDGP 229

Query: 255 YEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            +M ++ + L   GF  +       T    V+ + + +  RS LP+  DG++ +      
Sbjct: 230 SDMRRRQQLLTQAGFKYSGQYTHPVTRVEQVAQWRQ-RWYRSPLPFVSDGVIVREG---- 284

Query: 312 QKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++   RA SP    W+ + K+        +  I    GR+G L  VA+LEP  +    +
Sbjct: 285 -REPPGRAWSPGKGEWLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQ 426
               + +    + LD           I VGD++ +  AG+ IP++  ++    ERH   +
Sbjct: 344 QRVNVGSVARWQALD-----------IGVGDQLQISLAGQGIPRIDAVVWRTAERH---K 389

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P                   P   K  A         CS Q L RL    S+ A +++G+
Sbjct: 390 P------------------TPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGV 431

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + L    + ++P         IF+       +  +++ + G       +L+   +  R
Sbjct: 432 G-ENLWRAIQQQNPM------THIFSW---LALTVEQLQAVPGISAARGQHLWHQFDLVR 481

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                R++ ++G+      + +      L  +N+    + + A +   W +L   P VG+
Sbjct: 482 KRPFIRWVLAMGLPVPQGALTQ------LESENW----HLLAAKSEAQWRAL---PGVGE 528

Query: 607 IIAQAIVEFYQNPRNICAVEAL 628
           I A+ +V F  +P  +   + L
Sbjct: 529 IRARQLVAFLHHPDVVALAQWL 550


>gi|168241918|ref|ZP_02666850.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205339075|gb|EDZ25839.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 561

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 128/639 (20%), Positives = 240/639 (37%), Gaps = 114/639 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN        ++  V H+     + K+ + + + +++      W           +
Sbjct: 84  VSPPLN------GTTMHPVAHT----GVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +  +V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A  ++G+G+       ++    F       IF+       ++ +I N  GF       +
Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +   N  R     R+I ++ I    A +  S  + +            ++      W  L
Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
              P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 525 ---PATGERRAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560


>gi|327395796|dbj|BAK13218.1| DNA ligase YicF [Pantoea ananatis AJ13355]
          Length = 589

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 107/456 (23%), Positives = 192/456 (42%), Gaps = 65/456 (14%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A +  +A  E++ L+Q++   D  Y+Q  + ++ D++YD+L++R +     F   A    
Sbjct: 25  AWTSARAVSEIAHLQQQLRQWDKAYFQQGRSLVSDADYDSLQQRLNHWQRCFTQAADEYV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-QKKDDNSIFFT 129
           P  P      E       V H+           ++ +R    R   +W Q ++D      
Sbjct: 85  PALP------EDGTQWHPVAHT----------GVKKVRD--KRALGYWMQARND----LW 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PKIDG  +++ Y +GK V    RGDG  GE   A  R IP IP V+      I+ ++G
Sbjct: 123 VQPKIDGVAVSLIYRQGKLVSLISRGDGLHGEQWLAKARHIPAIPSVIDSQQGSIV-LQG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++     +  + + +  GR    N R   +G +     + +   L  F+         
Sbjct: 182 ELFLK----MTGHQQAVDGGR----NARARVAGAMMSQADSPLLAQLGIFIWSWPDGPAS 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L ++   GF + +   Q        + + E +   + LP+  DG+V      
Sbjct: 234 MP----ERLARLSSWGFDLASHWTQPVQDEEDAASWRE-RWFHAPLPFVTDGIVVHQAAR 288

Query: 310 SLQK--QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              K  Q GE      W I+ K+   + S+ +  +D  IGRTG +  V  ++PV +    
Sbjct: 289 PAGKYWQPGEG----EWAIAWKYQPPEVSSEVRSVDFSIGRTGKVAVVLNIQPVQLDDKT 344

Query: 368 ITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDII--VNERH-- 422
           +    +            G + R   +D+  GD+V V  AG+ IP++  +I  V +R   
Sbjct: 345 VRRVNI------------GSLKRWREQDVIAGDQVTVSLAGQGIPRLERVIWRVAQRDYP 392

Query: 423 --PDAQPFSFPS---FCPICQSRVVRDLNPKTGKLV 453
             P ++ F+  S     P C  +++  L+  + K V
Sbjct: 393 EPPGSEHFTHLSCYTLTPDCHRQLLARLSWLSQKFV 428


>gi|324111541|gb|EGC05522.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia fergusonii B253]
          Length = 561

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 172/408 (42%), Gaps = 60/408 (14%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A +E+S L+ ++    D Y++  K  + D  YD L  R       F D A SE    P+
Sbjct: 29  RANEEISRLQLQLKQWSDTYWKEGKSKVEDHVYDQLSARLAQWQRCFGDNADSETMMPPI 88

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +            V H +    + K+ +   L++++      W           ++PK+D
Sbjct: 89  SGT----------VMHPVAHTGVRKLADKNALQQWMRARRDVW-----------VQPKVD 127

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y  GK   A  RG+G  GED +  +R IP++P+ +S  +     ++GE+Y+ +
Sbjct: 128 GVAVTLVYRDGKLNQAISRGNGLKGEDWTQRLRLIPSVPQNVSGPLSNST-LQGEIYLQR 186

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
                +  +M  +      N R+  +G++ R   TD    L  F+       +       
Sbjct: 187 EGH--IQQQMGGM------NARSKVAGMMMRHGNTDTLNSLGVFIWAWPDGPQSMP---- 234

Query: 256 EMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV----DEFS 310
           E LQ +   GF +     R+ N+   +    +E    ++ LP+  DG+V +V    D   
Sbjct: 235 ERLQILTAAGFILTQQYTREVNSAREVEQVRSEW--WKTKLPFVTDGVVVRVGKEPDSRH 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q   G+      W+ + K+        +  I   +G++G +  VA L P+ +    +  
Sbjct: 293 WQPGQGD------WLAAWKYPPIAQVAEVNAIHFTVGKSGKIAVVASLAPIKLDDKRVQR 346

Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417
             +            G V R    DI  GD++LV  AG+ IP++ +++
Sbjct: 347 VNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDNVV 382


>gi|291619488|ref|YP_003522230.1| YicF [Pantoea ananatis LMG 20103]
 gi|291154518|gb|ADD79102.1| YicF [Pantoea ananatis LMG 20103]
          Length = 568

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 108/455 (23%), Positives = 192/455 (42%), Gaps = 63/455 (13%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A +  +A  E++ L+Q++   D  Y+Q  + ++ D++YD+L++R +     F   A    
Sbjct: 4   AWTSARAVNEIAHLQQQLRQWDKAYFQQGRSLVSDADYDSLQQRLNHWQRCFTQAADEYV 63

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-QKKDDNSIFFT 129
           P  P      E       V H+           ++ +R    R   +W Q ++D      
Sbjct: 64  PALP------EDGTQWHPVAHT----------GVKKVRD--KRALGYWMQARND----LW 101

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PKIDG  +++ Y +GK V    RGDG  GE   A  R IP IP V+      I+ ++G
Sbjct: 102 VQPKIDGVAVSLIYRQGKLVSLISRGDGLHGEQWLAKARHIPAIPSVIDSQQGSIV-LQG 160

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++     +  + + +  GR    N R   +G +     + +   L  F+         
Sbjct: 161 ELFLK----MTGHQQAVDGGR----NARARVAGAMMSQADSPLLAQLGIFIWSWPDGPAS 212

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L ++   GF + +   Q        + + E +   + LP+  DG+V      
Sbjct: 213 MP----ERLARLSSWGFDLASHWTQPVQDEEDAASWRE-RWFHAPLPFVTDGIVVHQAAR 267

Query: 310 SLQK--QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              K  Q GE      W I+ K+   + S+ +  +D  IGRTG +  V  ++PV +    
Sbjct: 268 PAGKYWQPGEG----EWAIAWKYQPPEVSSEVRSVDFSIGRTGKVAVVLNIQPVQLDDKT 323

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH--- 422
           +    +           S K  R  +D+  GD+V V  AG+ IP++  +I  V +R    
Sbjct: 324 VRRVNI----------GSLKRWR-EQDVIAGDQVTVSLAGQGIPRLERVIWRVAQRDYPE 372

Query: 423 -PDAQPFSFPS---FCPICQSRVVRDLNPKTGKLV 453
            P ++ F+  S     P C  +++  L+  + K V
Sbjct: 373 PPGSEHFTHLSCYTLTPDCHRQLLARLSWLSQKFV 407


>gi|194445315|ref|YP_002042988.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|226737625|sp|B4SXE9|LIGB_SALNS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|194403978|gb|ACF64200.1| NAD-dependent DNA ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 561

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 119/564 (21%), Positives = 214/564 (37%), Gaps = 107/564 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
            + PLN        ++  V H+              +RK   R +   W +         
Sbjct: 84  VSPPLN------GTTMHPVAHT-------------GVRKLADRQVVEQWMRGRSE---LW 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++G
Sbjct: 122 VQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGALANAV-LQG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +   +          R    N R+  +G+L R +       L  F+         
Sbjct: 181 EIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA------- 225

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
           +  G   M +++  L      G      +  +V   +E++  R     S LP+  DG+V 
Sbjct: 226 WPDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVI 282

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           ++ +    +    R     W+ + K+       ++  I   +G++G +T VA L PV + 
Sbjct: 283 RMAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILD 340

Query: 365 GALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH- 422
              +    +            G V R    DI  GD++LV  AG+ IP++ +++   R  
Sbjct: 341 DKRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRER 388

Query: 423 -----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
                PD+   S   F                              C  Q + RL    S
Sbjct: 389 SKPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLIWLGS 423

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           R A  ++G+G+       ++   +  FS        TL      ++ +I N  GF     
Sbjct: 424 RSALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKS 471

Query: 536 TNLYDSINKRRNISLERFIFSLGI 559
             ++   N  R     R+I ++ I
Sbjct: 472 EQIWRQFNLARRQPFTRWIMAMDI 495


>gi|200387460|ref|ZP_03214072.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199604558|gb|EDZ03103.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 561

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 118/563 (20%), Positives = 216/563 (38%), Gaps = 105/563 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +  +V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLIWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
            A  ++G+G+       ++   +  FS        TL      ++ +I N  GF      
Sbjct: 425 SALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSE 472

Query: 537 NLYDSINKRRNISLERFIFSLGI 559
            ++   N  R     R+I ++ I
Sbjct: 473 QIWRQFNLARRQPFTRWIMAMDI 495


>gi|30065077|ref|NP_839248.1| NAD-dependent DNA ligase LigB [Shigella flexneri 2a str. 2457T]
 gi|56480394|ref|NP_709426.2| NAD-dependent DNA ligase LigB [Shigella flexneri 2a str. 301]
 gi|81839371|sp|Q83PM9|LIGB_SHIFL RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|30043338|gb|AAP19059.1| putative enzyme [Shigella flexneri 2a str. 2457T]
 gi|56383945|gb|AAN45133.2| putative enzyme [Shigella flexneri 2a str. 301]
 gi|332751117|gb|EGJ81520.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri 2747-71]
          Length = 560

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 124/585 (21%), Positives = 228/585 (38%), Gaps = 96/585 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  + + +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++ 
Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P          ++R     NP T    +         C  Q + RL    S+    ++G
Sbjct: 392 PP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLDG 430

Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+       ++   +  FS  +             +  +++N  G        L+   N
Sbjct: 431 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 478

Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             RN    R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 479 LARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|32482046|gb|AAP49290.1| NAD-dependent DNA ligase [Bacillus sp. IMG-1]
          Length = 121

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 1/118 (0%)

Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA G  R+L P    +R L+ FV+GL     +      E L  ++ LGF VN   
Sbjct: 1   ANPRNAAGGSFRQLEPKVAASRQLDLFVYGLADAEALGIASHSEALDYLQALGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
           R+      ++++ +E    R  LPY+IDG+V KVD F+ Q+ LG  A+SPRW I++KF
Sbjct: 61  RRCANIDEVIAFISEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKF 118


>gi|281603010|gb|ADA75994.1| DNA ligase B [Shigella flexneri 2002017]
          Length = 562

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 124/585 (21%), Positives = 228/585 (38%), Gaps = 96/585 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 85  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  + + +S  +     ++GE
Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGPLANST-LQGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++ 
Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 234

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 235 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 289 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 346 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 393

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P          ++R     NP T    +         C  Q + RL    S+    ++G
Sbjct: 394 PP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLDG 432

Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+       ++   +  FS  +             +  +++N  G        L+   N
Sbjct: 433 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 480

Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             RN    R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 481 LARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|187775663|ref|ZP_02992667.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188024760|ref|ZP_02997228.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4113]
 gi|189010103|ref|ZP_02804810.2| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189401811|ref|ZP_03006485.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189402714|ref|ZP_03006814.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189403713|ref|ZP_03007195.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189404723|ref|ZP_02810531.2| NAD-dependent DNA ligase adenylation domain [Escherichia coli
           O157:H7 str. EC869]
 gi|189405711|ref|ZP_03007918.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC508]
 gi|208809321|ref|ZP_03251658.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814147|ref|ZP_03255476.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820627|ref|ZP_03260947.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397991|ref|YP_002273126.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325818|ref|ZP_03441902.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           TW14588]
 gi|187771517|gb|EDU35361.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016999|gb|EDU55121.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002376|gb|EDU71362.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358909|gb|EDU77328.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364410|gb|EDU82829.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369721|gb|EDU88137.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374635|gb|EDU93051.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli
           O157:H7 str. EC869]
 gi|189378779|gb|EDU97195.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC508]
 gi|208729122|gb|EDZ78723.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735424|gb|EDZ84111.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740750|gb|EDZ88432.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159391|gb|ACI36824.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4115]
 gi|217322039|gb|EEC30463.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           TW14588]
          Length = 577

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 123/586 (20%), Positives = 227/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 41  AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 99

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 100 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 138

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 139 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 197

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 198 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 249

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 250 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 303

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+       ++  I   +G++G ++ VA L PV +    +
Sbjct: 304 PESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 361 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 408

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 409 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 446

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 447 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 494

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 495 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 540


>gi|12518406|gb|AAG58791.1|AE005592_2 putative enzyme [Escherichia coli O157:H7 str. EDL933]
          Length = 562

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 123/586 (20%), Positives = 227/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 85  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 234

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 235 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRXAKE 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+       ++  I   +G++G ++ VA L PV +    +
Sbjct: 289 PESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 346 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 393

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 394 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 432 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 479

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 480 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|32307200|gb|AAP79093.1| NAD-dependent DNA ligase [Bacillus catenulatus]
          Length = 121

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 1/118 (0%)

Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA G  R+L P    +R L+ FV+GL    E+      E L  ++ LGF VN   
Sbjct: 1   ANPRNAAVGSFRQLEPKVAASRKLDLFVYGLANAEELGIASHSEALDYLQELGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
           R+      ++++ +E    R  LPY+IDG+V KVD F+ +++LG  A+SPRW I++KF
Sbjct: 61  RRCANIDEVIAFISEWHEKRPQLPYEIDGIVIKVDSFAQRRELGATAKSPRWAIAYKF 118


>gi|322612905|gb|EFY09857.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618970|gb|EFY15857.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625253|gb|EFY22080.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630079|gb|EFY26852.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634271|gb|EFY31006.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635828|gb|EFY32537.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642969|gb|EFY39547.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645038|gb|EFY41569.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649862|gb|EFY46285.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653069|gb|EFY49404.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661112|gb|EFY57340.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662399|gb|EFY58612.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667277|gb|EFY63443.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674346|gb|EFY70439.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678446|gb|EFY74507.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680952|gb|EFY76986.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687112|gb|EFY83085.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323198247|gb|EFZ83353.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323200865|gb|EFZ85935.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206619|gb|EFZ91577.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210468|gb|EFZ95354.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216243|gb|EGA00971.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220466|gb|EGA04920.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225330|gb|EGA09564.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228444|gb|EGA12575.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234265|gb|EGA18353.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237250|gb|EGA21317.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244769|gb|EGA28773.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323245856|gb|EGA29846.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250961|gb|EGA34837.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257291|gb|EGA40990.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262215|gb|EGA45776.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264574|gb|EGA48078.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268863|gb|EGA52321.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 561

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 127/639 (19%), Positives = 236/639 (36%), Gaps = 114/639 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN              H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLNGT----------TRHPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +   V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A  ++G+G+       ++    F       IF+       ++ +I N  GF       +
Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +   N  R     R+I ++ I    A +  S  + +            ++      W  L
Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
              P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 525 ---PSTGERRAGRVIDWRDNPQIKALSRWLAAQHIPGFG 560


>gi|161367494|ref|NP_290227.2| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EDL933]
          Length = 560

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 123/586 (20%), Positives = 227/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRXAKE 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+       ++  I   +G++G ++ VA L PV +    +
Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 392 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 430 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 477

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 478 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|226942521|ref|YP_002797594.1| NAD-dependent DNA ligase LigB [Azotobacter vinelandii DJ]
 gi|257096555|sp|C1DIC2|LIGB_AZOVD RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226717448|gb|ACO76619.1| NAD-dependent DNA ligase [Azotobacter vinelandii DJ]
          Length = 560

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 124/546 (22%), Positives = 215/546 (39%), Gaps = 95/546 (17%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
           + +++YH D      +  + D  YD  + R       FP  A    P  PL    G +  
Sbjct: 46  QWDVAYHRD-----GRSPVADELYDQARARLADWNRCFPGQA-DASPE-PLAGSAGPL-- 96

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
                 H +P   L K+ +   +R ++      W            +PK+DG  +T+ Y 
Sbjct: 97  -----LHPVPHTGLAKL-DEAAVRDWMATREDLWT-----------QPKVDGVAVTLEYA 139

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            G+   A  RGDG  G+D +A +R +P +PR L+     I++  GE+Y      L  + +
Sbjct: 140 DGRLRRAISRGDGRHGQDWTARVRRLPALPRQLAERRRLILQ--GELYWR----LPGHVQ 193

Query: 205 MIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKGQYEM---LQ 259
             A GR    + R   +G+L R  L+  D          G+G     +  G  +M   L 
Sbjct: 194 AEAGGR----SARARVAGLLARDTLDDGDAA--------GIGLFVWDWPNGPADMRARLD 241

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGF       +          + E +  R  LP+  DG+V +      ++  GER 
Sbjct: 242 GLERLGFAEARRYSRPVADFATARQWRE-RWYREPLPFASDGVVLRQG----RRPPGERW 296

Query: 320 RS--PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
           R+  P W ++ K+   QA   +  +  +IGR+G +TP   L+PV +    I    L +  
Sbjct: 297 RAEPPHWAVAWKYPLAQALAEVRAVRFRIGRSGRITPQLELQPVRLDDRQIRRVALGSLR 356

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
             + L           D+R GD+V ++ AG+ IP+V  ++       A+  + PS     
Sbjct: 357 RWREL-----------DVRPGDQVAIRLAGQSIPQVDAVVWRA----AERPALPS----- 396

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
                   +P     ++  R   G  C  Q L RL     R   ++ G+G+   +   ++
Sbjct: 397 -------PDPAAHHALSCWRPLPG--CEEQFLARLDWLGGRRGLDLRGVGRGTWEALLEN 447

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                       +  L    +    ++  + GFG+ S + L +     R      ++ +L
Sbjct: 448 ----------GRLDDLLGWLELDEARLAELPGFGERSASLLAERFRAARRRPFPMWLRAL 497

Query: 558 GIRHVG 563
           G+   G
Sbjct: 498 GLPPAG 503


>gi|38704188|ref|NP_312549.2| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. Sakai]
 gi|195936208|ref|ZP_03081590.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4024]
 gi|254795602|ref|YP_003080439.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224170|ref|ZP_05938451.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254780|ref|ZP_05947313.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|166226377|sp|Q8XD89|LIGB_ECO57 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|257096607|sp|B5YWE6|LIGB_ECO5E RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|254595002|gb|ACT74363.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           TW14359]
 gi|320639554|gb|EFX09162.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. G5101]
 gi|326337353|gb|EGD61188.1| DNA ligase , LigB [Escherichia coli O157:H7 str. 1044]
          Length = 560

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 123/586 (20%), Positives = 227/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+       ++  I   +G++G ++ VA L PV +    +
Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 392 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 430 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 477

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 478 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|13363997|dbj|BAB37945.1| putative enzyme [Escherichia coli O157:H7 str. Sakai]
 gi|209754570|gb|ACI75592.1| putative enzyme [Escherichia coli]
 gi|209754572|gb|ACI75593.1| putative enzyme [Escherichia coli]
 gi|209754576|gb|ACI75595.1| putative enzyme [Escherichia coli]
          Length = 562

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 123/586 (20%), Positives = 227/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 85  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 234

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 235 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+       ++  I   +G++G ++ VA L PV +    +
Sbjct: 289 PESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 346 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 393

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 394 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 432 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 479

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 480 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|256021349|ref|ZP_05435214.1| NAD-dependent DNA ligase LigB [Shigella sp. D9]
          Length = 560

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 123/586 (20%), Positives = 226/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 392 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 430 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQF 477

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 478 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|326392616|ref|ZP_08213952.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200]
 gi|325991342|gb|EGD49998.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200]
          Length = 210

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 10/197 (5%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           +YH+  YY   +P I D EYD L R    +   +P+    + P+ P  ++GGE       
Sbjct: 20  NYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---KTPDSPSQRVGGEPLKEFEP 76

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
            TH +P LSL   ++  +LR F  R+     ++    + + +E KIDG  + + YE G F
Sbjct: 77  FTHVVPMLSLANAFSEGELRDFDRRV-----REAVGDVEYVVELKIDGLSVELIYENGIF 131

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
              + RGDG  GE+V+  ++ I +IP  L  ++  +  VRGEV++ +  F  LN+E   +
Sbjct: 132 TVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVSLV--VRGEVFMPRTSFEKLNEEREKI 189

Query: 209 GRKPYANPRNAASGILR 225
             KP+   +   S   +
Sbjct: 190 RGKPFCKSQKCCSRFFK 206


>gi|332282582|ref|ZP_08394995.1| NAD-dependent DNA ligase LigB [Shigella sp. D9]
 gi|323944100|gb|EGB40180.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli H120]
 gi|332104934|gb|EGJ08280.1| NAD-dependent DNA ligase LigB [Shigella sp. D9]
          Length = 562

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 123/586 (20%), Positives = 226/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 85  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 234

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 235 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 289 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 346 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 393

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 394 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 432 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQF 479

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 480 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|168818429|ref|ZP_02830429.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205344676|gb|EDZ31440.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320088159|emb|CBY97921.1| DNA ligase Polydeoxyribonucleotide synthase [NAD+] [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 561

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 117/561 (20%), Positives = 214/561 (38%), Gaps = 101/561 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------I 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+  +G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +   V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLAVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++   R   
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               PD+   S   F                              C  Q + RL    SR
Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A  ++G+G+       ++    F       IF+       ++ +I N  GF       +
Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474

Query: 539 YDSINKRRNISLERFIFSLGI 559
           +   N  R     R+I ++ I
Sbjct: 475 WRQFNLARRQPFTRWIMAMDI 495


>gi|193070347|ref|ZP_03051289.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E110019]
 gi|192956286|gb|EDV86747.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E110019]
          Length = 577

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 123/586 (20%), Positives = 226/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 41  AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 99

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 100 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 138

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 139 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 197

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 198 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 249

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 250 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 303

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 304 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 361 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 408

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 409 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 446

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 447 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQF 494

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 495 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 540


>gi|291285018|ref|YP_003501836.1| DNA ligase B [Escherichia coli O55:H7 str. CB9615]
 gi|290764891|gb|ADD58852.1| DNA ligase B [Escherichia coli O55:H7 str. CB9615]
 gi|320644993|gb|EFX14023.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H- str.
           493-89]
 gi|320650260|gb|EFX18749.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H- str. H
           2687]
 gi|320655612|gb|EFX23540.1| NAD-dependent DNA ligase LigB [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661346|gb|EFX28770.1| NAD-dependent DNA ligase LigB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666360|gb|EFX33359.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 560

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 123/586 (20%), Positives = 226/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 392 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 430 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 477

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 478 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523


>gi|209754568|gb|ACI75591.1| putative enzyme [Escherichia coli]
 gi|209754574|gb|ACI75594.1| putative enzyme [Escherichia coli]
          Length = 562

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 123/586 (20%), Positives = 226/586 (38%), Gaps = 98/586 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 26  AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 84

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 85  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 234

Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308
                + L+++   GF +     R       +    NE    ++ LP+  DG+V +   E
Sbjct: 235 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 289 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
               +            G V R    DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 346 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 393

Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            P + F S      S V                      C  Q + RL    S+    ++
Sbjct: 394 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 432 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 479

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 480 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525


>gi|310831452|ref|YP_003970095.1| putative NAD-dependent DNA ligase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386636|gb|ADO67496.1| putative NAD-dependent DNA ligase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 651

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 167/739 (22%), Positives = 310/739 (41%), Gaps = 161/739 (21%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL-NKI 78
           ++  LE+ +      YY  S PI+ D ++D L    D +    P     +    P+ NK+
Sbjct: 22  KIKELEKLLEQASKSYYNTSNPILTDDQFDIL---LDFLNKRNPKSTFLKQVGAPIKNKV 78

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
             +  L S+ K+    P+  LEK W    L+K+    Y              L  K+DG 
Sbjct: 79  ELDYYLGSMDKIKP--PSTKLEK-W----LKKYSAPYY--------------LSDKLDGI 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-------------I 184
              + Y+  K +    RG    G D++  I+ +  +P   S N+ E             +
Sbjct: 118 SGLVVYQNNK-IKLFTRGTATEGMDITTLIKYL-NLP---SYNVVETKLKKLGLKGHKNL 172

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL--RRLNPTDITRYLNFFVHG 242
           I +RGE+ +SK++F   N E        + N RN  +G++  +   P+ +++ L+F ++ 
Sbjct: 173 IALRGEIIMSKSNFSKHNKE--------FKNARNLVAGLVNSKHKKPS-LSQDLDFVLYQ 223

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +      F     E +  ++ LGF      ++    + ++S    +K  ++   Y++DG+
Sbjct: 224 VVDPVITFV----EQMDLIKELGFKNVYYQKEKELNYNVLSQI--LKQRKNNSDYEVDGI 277

Query: 303 VY---KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           +    K+ + ++ K   E A + + ++   F E    + +  ++  I ++G + P   + 
Sbjct: 278 IVTNNKLHKLNIGKN-PEFAFAFKELVEETFKE----STVKHVEWNISKSGKIMPTVVIL 332

Query: 360 PVNIGGALITNATLHNEDYIK--GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           PV + G  ++  T  N  Y+K  GL               G ++ + R+G+VIP +V   
Sbjct: 333 PVEMEGVTVSRVTAFNAKYVKENGLGP-------------GSKIQITRSGDVIPYIV--- 376

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG----GLACSAQQLERLK 473
                                 +V++ ++P+  K+      +G     L  S +Q  R  
Sbjct: 377 ----------------------KVIKKVSPEFPKIDYKWTDSGVDIRTLDQSDEQQIR-- 412

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIF-----TLQRRQQTSTTKIENI 527
                           Q+ FFFK+ D   F +++   +F     T+++  +        +
Sbjct: 413 ----------------QIYFFFKTLDTKRFGLKLIVKMFENNFNTIEKILKMDKDDFIKL 456

Query: 528 LGFGDVSVTNLYDSIN--KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
            G  D S TN Y+ +   K  N  LE+ I  L    +G       AK  L + N+    N
Sbjct: 457 DGVKDKSATNFYNELQRIKSTNFPLEKLI--LATNSLGDNFGSKKAK--LIFDNYPDIFN 512

Query: 586 NIIAHN---NDDW-LSLIRVPLVGDIIAQAIVEFYQN-PRNICAVEALLKEVSPSIGRHE 640
             I  N    ++W L    +P +    A+ I+  +    +NI  +E   K  + +I +  
Sbjct: 513 KNIIKNEKIKNEWILKFKNIPGIEQKTAEQIINKWDVLQKNIKWLE---KYFTININKSS 569

Query: 641 KNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----NP 694
           K VS++ ++  K V TG   K  ++K +E    +G  VS  +S+ TDI++V D     NP
Sbjct: 570 KQVSNKNLKYIKWVLTGFRDKELQNKIEE----MGGTVSNSVSKNTDIVVVKDSSVLNNP 625

Query: 695 GSKLEKAQQLGVKIMNEEQ 713
             K+ KA+ LG+KI+ + +
Sbjct: 626 TGKVLKAKDLGIKIIEKSK 644


>gi|48249475|gb|AAT40982.1| putative DNA ligase [Xenorhabdus nematophila]
          Length = 168

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 22/177 (12%)

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI+SLGIR VG   A +L  ++ + +               D  +LI V  VG I+A  
Sbjct: 6   RFIYSLGIREVGETTAANLVSHFGTLEKLQAA----------DTEALIAVQDVGGIVASH 55

Query: 612 IVEFYQNPRNICAVEALLKEV--------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +V F+  P N   ++ L+  +        SP++G     +      K +V TG+L ++ R
Sbjct: 56  VVNFFNEPHNQAVIDDLVNNIGIHWESAESPNLGE----IDGPFAGKTVVLTGSLNRLSR 111

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A++ +  LGA V+  +S+KTD++I G+  GSKL KA +LG+ +++E++ + LL++
Sbjct: 112 DEAKDKLAALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELGIPVIDEDEMIRLLRE 168


>gi|56415629|ref|YP_152704.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364556|ref|YP_002144193.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81821323|sp|Q5PC41|LIGB_SALPA RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737626|sp|B5BI22|LIGB_SALPK RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|56129886|gb|AAV79392.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096033|emb|CAR61620.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 561

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 128/618 (20%), Positives = 236/618 (38%), Gaps = 106/618 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  
Sbjct: 24  AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + PLN  G  M        H +    + K+ + + + +++      W           +
Sbjct: 84  VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWVRGRSELW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++GE
Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +   +          R    N R+ A+G+L R +       L  F+         +
Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWA-------W 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
             G   M +++  L      G      +   V   +E++  R     S LP+  DG+V +
Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLAVKDASEVERARQSWLTSALPFVTDGVVIR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIV--NERH 422
             +    +            G V R    DI  GD++LV  AG+ IP++ +++    ER 
Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
               P S                N  T    +A        C  Q + RL    SR A  
Sbjct: 390 KPVPPGSH--------------FNSLTCFYASA-------TCQEQFISRLVWLGSRSALG 428

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           ++G+G+       ++    F       IF+       ++ +I N  G        ++   
Sbjct: 429 LDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGVAKGKSEQIWRQF 478

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              R  S  R+I ++ I    A +  S  + +            ++      W  L   P
Sbjct: 479 YLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL---P 525

Query: 603 LVGDIIAQAIVEFYQNPR 620
             G+  A  ++++  NP+
Sbjct: 526 ATGERRAGRVIDWRNNPQ 543


>gi|326633001|ref|YP_004306590.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage SPC35]
 gi|321272195|gb|ADW80087.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage SPC35]
          Length = 323

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 174/400 (43%), Gaps = 86/400 (21%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +++++  I    + YYQ    +I D EYD L +R       FP L     P G       
Sbjct: 1   MTNVKNFIKRCQEAYYQ-GMSLISDEEYDRLIKR-------FP-LEEEIGPKG------- 44

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
                   + H     SL+K++            Y    K   N +      K+DG  I+
Sbjct: 45  -------DIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAIS 85

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G+FV A  RG+G  G DV++ +R +  IP+ +S  +P   ++ GEV I+K     
Sbjct: 86  LLYINGEFVQALTRGNGILGNDVTSNVRLL-NIPKKISQKVP--TQITGEVLITKE---- 138

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
                         N RN ASG +   +  D       FV  +G+   IF      +   
Sbjct: 139 ------------VENKRNFASGAINLKDSDD-------FVQRIGEGGLIF------VAYG 173

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNE----MKSIRSTLPY-DIDGLVYKVDEFSLQKQL 315
           ++C    V  G+ +A     ++   NE    + ++RS   +   DG V ++++ +   + 
Sbjct: 174 IQCSAESV--GITEA-YLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNNKFFRE 230

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   +SPR   + K  E+   T L  ++   G +G +TPV   EPV I  A+IT ATL+N
Sbjct: 231 GWTNKSPRGAFAIKEDEEGEITTLTKVEWATGASGKITPVGYFEPVIIDDAVITKATLNN 290

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
            DYI  L           D+ +G ++ V RAG VIPK+V+
Sbjct: 291 VDYINSL-----------DLEIGCQIRVIRAGGVIPKIVE 319


>gi|270700816|ref|ZP_06223057.1| DNA ligase [Haemophilus influenzae HK1212]
 gi|270315848|gb|EFA27948.1| DNA ligase [Haemophilus influenzae HK1212]
          Length = 152

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 90/158 (56%), Gaps = 17/158 (10%)

Query: 96  LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLEPKIDGTMITIRYEKGKFV 149
           LSL+  ++  +   F+ RI       +D  I       F  EPK+DG  ++I Y  G+  
Sbjct: 2   LSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCEPKLDGLAVSILYVNGELT 54

Query: 150 YAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
            AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV++    F  LN   +  
Sbjct: 55  QAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGFERLNKYALEH 114

Query: 209 GRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244
             K +ANPRNAA+G LR+L+P +IT  R L    +G+G
Sbjct: 115 NEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIG 151


>gi|123440450|ref|YP_001004444.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166226365|sp|A1JHV9|LIGB_YERE8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|122087411|emb|CAL10192.1| putative DNA ligase [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 565

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 184/427 (43%), Gaps = 64/427 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA--IAHAFPDLARSED 70
           S E+   E+  LE+++   +  Y+Q     I D  YD L+ +     +    PD    + 
Sbjct: 31  SEERMSGEMHLLEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWRLCLGLPD----KT 86

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            N P+   G        K+ H +    L+K+ +   L  ++T     W           +
Sbjct: 87  DNRPIPGNG--------KMLHPVAHTGLKKLKDEAALISWMTGRKNLW-----------V 127

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PKIDG  +T+ Y+ GK      RG+G  G++ +     I  IP+ ++ + P ++ ++GE
Sbjct: 128 QPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIA-SAPPLLTLQGE 186

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           V      FL +     A  +   AN R + +G L R + + +   L  F+         +
Sbjct: 187 V------FLQMEGHQQA--QSGGANARASVAGALMRKSVSPLLAKLGIFIWA-------W 231

Query: 251 AKGQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             G   M++K R L   GFP+     +       V+ + + +  +  LP+  DG+V + +
Sbjct: 232 PDGPKSMVEKSRLLQEMGFPLTAHYSEPVISSSDVALWRD-RWFKMPLPFVTDGVVIRQE 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                +    +A    W ++ K+   Q  T + DI   +GRTG +T + ++ PV I    
Sbjct: 291 NVPAGRYW--QATPGNWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVIPVKI---- 344

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH--- 422
                  ++ +I+ ++          DI  GD+V +  AG+ IP++  +I  V++R    
Sbjct: 345 -------DDKWIRRVNIGSIARWKQWDIVPGDQVTISLAGQGIPRLDKVIWRVSQRQEIV 397

Query: 423 -PDAQPF 428
            PDA  F
Sbjct: 398 PPDADKF 404


>gi|213419664|ref|ZP_03352730.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 190

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 17/193 (8%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIA 589
           G  S  N+ +++ K +  +  RF+++LGIR VG   A  LA Y+ + +   A  I+    
Sbjct: 8   GPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATID---- 63

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSS 645
                   L +VP VG ++A  +  F+    N   +  LL E     +P +  + + + S
Sbjct: 64  -------ELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INAQEIDS 115

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
               K +V TG+L ++ R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG
Sbjct: 116 PFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELG 175

Query: 706 VKIMNEEQFLFLL 718
           + +++E + + LL
Sbjct: 176 ITVIDEAEMIRLL 188


>gi|238789535|ref|ZP_04633319.1| DNA ligase B [Yersinia frederiksenii ATCC 33641]
 gi|238722288|gb|EEQ13944.1| DNA ligase B [Yersinia frederiksenii ATCC 33641]
          Length = 565

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 178/410 (43%), Gaps = 60/410 (14%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI--AHAFPDLARSEDPNGPLNK 77
           E++ L+Q++S  D  Y+Q    ++ D+ YD L+ +          PD            K
Sbjct: 38  EINLLDQQLSKWDIAYHQQGVSLLDDNVYDQLQDKLRGWRECRGLPD------------K 85

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
               +     K  H +    L+K+ N   L  +++     W           ++PK+DG 
Sbjct: 86  TNNRLIPGNGKRLHPVAHTGLKKLKNEMALTNWMSGRKNLW-----------VQPKVDGV 134

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y+ GK      RG+G  G+        I  IP+ +++  P ++ ++GE+      
Sbjct: 135 AVTLVYQAGKLTQLLSRGNGLKGQSWIDKAPFISAIPQYIAM-APPLLTLQGEL------ 187

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           FL +     A  +    N R + +G L R + + +   L  F+         +  G   M
Sbjct: 188 FLQMEGHQQA--QSGGVNARTSVAGALMRKSASPLLAKLGIFIWA-------WPDGPRNM 238

Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +++   ++ +GFP+     ++ T    V  + E    R+ LP+  DG+V + +E    + 
Sbjct: 239 VERTTLLQIMGFPLAAQYSKSVTSSKDVIQWRE-HWYRAPLPFVTDGVVIRQEEEPAGRY 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              R+ S  W ++ K+   Q  T + DI   +GRTG +T V ++ PV I           
Sbjct: 298 W--RSASGNWSVAWKYPPIQQLTEIQDIHFTVGRTGKITVVLQVSPVKI----------- 344

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH 422
           ++ +I+ ++          +I  GD+V +  AG+ IP++  ++  V++RH
Sbjct: 345 DDKWIRRVNIGSMARWRQWNITSGDQVTIALAGQGIPRLDKVVWRVDQRH 394


>gi|159487072|ref|XP_001701559.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158271500|gb|EDO97317.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 623

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 119/244 (48%), Gaps = 30/244 (12%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE  ++ H + Y+  + P I D+ YD LKRR   +A     +A +ED   P+       +
Sbjct: 4   LEAALTKHRELYFNQT-PEISDAAYDELKRRFRDLAARLRGVA-AEDVAFPVGAPVAAAS 61

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDD--NSIFFTLEPKIDGTMIT 140
            +L KV H++P  SL  + + +++  ++ R + R  Q +     S  + +EPK+DG  + 
Sbjct: 62  -ALRKVKHTVPMTSLAAVNSRQEVEAWMGRTLARLAQLRQGAAGSWGWVVEPKVDGLAVR 120

Query: 141 IRYEKG-----------KFVYAALRGDGHSGEDVS-----ACIRAIP---TIP-----RV 176
           + Y +            +   AA RGDG  GEDV+       I+ +P   T+P       
Sbjct: 121 VVYRRVAKGDGGGGAAYELQEAATRGDGEVGEDVTHNALHGGIQGLPLRFTMPPGAATSA 180

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL 236
            +   PE +EVRGEVY+   D   +N E  A G   +AN RNAASG LR L+P +  R  
Sbjct: 181 PTSAAPEWVEVRGEVYVRIADLQQVNKEAEAAGGSGFANARNAASGGLRLLDPAECRRRR 240

Query: 237 NFFV 240
             FV
Sbjct: 241 LSFV 244



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 30/217 (13%)

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK-------LVAAHRCTGGLAC 464
           +V+ ++   R P AQP++ P+ CP C   V   L P   K        VAA +   G  C
Sbjct: 281 EVMRVLPELRPPGAQPWALPACCPACGGPV--RLQPAASKDAGEQLLCVAAEQ---GAGC 335

Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524
           SAQQ   L HF ++      GL    +     +        +P D +T   R   S    
Sbjct: 336 SAQQERMLLHF-AKVCLKGSGLAAGVMQALTAAG--LLEGGLP-DFYTRLDRATLSA--- 388

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
             + GFG      +   +   +++     +  L I+ VG   A++L    ++Y     E+
Sbjct: 389 --LPGFGAARAEAIAARVAASKSMRSAELLHGLNIKSVGETAAKALG---VAYPRLVPEL 443

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
                     W  +     +G +++Q +  + + P N
Sbjct: 444 QRA------SWQEIKAASGLGQVVSQNVETWMRQPAN 474


>gi|37524304|ref|NP_927648.1| NAD-dependent DNA ligase LigB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81420505|sp|Q7N9N4|LIGB_PHOLL RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|36783727|emb|CAE12581.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 580

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 126/586 (21%), Positives = 231/586 (39%), Gaps = 110/586 (18%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++ ++E +SL Q++++ D  Y Q     I D  YD L                S+ P 
Sbjct: 35  SQDKLQRETNSLMQQMAHWDQLYRQKGISEIDDEVYDQLMSELTHWQFCLKQAPHSDFP- 93

Query: 73  GPLNKIGGEMNLSLF---KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
                      + +F   K+ H +    L K+ + +++ +++      W           
Sbjct: 94  -----------VEVFPDNKLVHPVAHTGLSKLKDKQEINRWLHGRLPVW----------- 131

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           L+PKIDG  +T+ Y+ GK V    RG+G  G + +A  R IP IP+ +  N P  + ++G
Sbjct: 132 LQPKIDGVAVTLVYQNGKLVSLISRGNGAEGVNWTAKSRYIPDIPQNIE-NAPPDLVLQG 190

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ K +      +++          RN  +G++ R + +   + +  F+         
Sbjct: 191 ELFLHKEEH---RQQLLGSD-----GARNRVAGLMMRKDHSSELKQIGLFIWS------- 235

Query: 250 FAKGQYEMLQKMRCL---GFPV----NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +  G  EM  K+R L   GFP+    ++ + +      +  +Y E   + +T     DG+
Sbjct: 236 WPDGPAEMESKLRKLADMGFPLALRYSHKIEEPEQVQKLRMHYFEQPMLFAT-----DGI 290

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K +      Q   R+ S  W ++ K   +   T++ +++  IGRTG ++ V  L+ V 
Sbjct: 291 VLKQEIEPKGNQW--RSGSNSWAVAWKHPLRHQVTQVREVNFTIGRTGKISVVLGLDKVK 348

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII--VN 419
           +    I+   +            G V R  + D+  GDRV +  AG  IPK+  ++  + 
Sbjct: 349 LDDRQISRVNI------------GSVRRWRQLDVLPGDRVTLTLAGHGIPKLAQVVWRIK 396

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSR 478
           ER                     +D+ P   +   A  C T  + C  Q   RLK     
Sbjct: 397 ER---------------------QDIQPPDKQHYHALSCLTLTVGCEQQFNARLKWL--- 432

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
              N++  G     +   +E           +  L      S  +I  + G GD     +
Sbjct: 433 -GENLQMTGVSSGSWAMLTERKL--------VTDLTGWLALSAQQIAALPGIGDKRAQAI 483

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           Y   +K +N       FS  ++ +G      L+     +Q   Q++
Sbjct: 484 YSQFSKAKNQP-----FSYWMKGIGVPYMDKLSDNVYHWQQLEQKL 524


>gi|161505725|ref|YP_001572837.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189046592|sp|A9MKM6|LIGB_SALAR RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|160867072|gb|ABX23695.1| hypothetical protein SARI_03901 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 561

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 130/627 (20%), Positives = 238/627 (37%), Gaps = 106/627 (16%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E++ L+Q+++  +D Y++     + DS YD L  +             S   + PLN  
Sbjct: 32  EEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSAKLVQWQRCVGQDVSSTPVSPPLNGT 91

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
                      TH +    + K+ + + + +++     FW           ++PK+DG  
Sbjct: 92  ----------TTHPVAHTGVRKLADRQAVAQWMRGHSEFW-----------VQPKVDGVA 130

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +T+ Y+ GK   A  RG+G  GED +  IR I +IP+     +   + ++GE+      F
Sbjct: 131 VTLVYQNGKLTRAISRGNGLQGEDWTQKIRQISSIPQTTRGALANAV-LQGEI------F 183

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
           L L   +    R    N R+  +G+L R   T     L  F+         +  G   M 
Sbjct: 184 LQLKGHIQQ--RMGGMNARSKVAGMLMRQKNTSALNSLGIFIWA-------WPDGPANMT 234

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKV-DEFSLQ 312
           +++  L      G      +  +V   +E++  R     S LP+  DG+V ++  E S Q
Sbjct: 235 ERLSQL---AKAGFSLTQKYSQMVKNASEVERARRSWLTSALPFVTDGVVIRMAKEPSSQ 291

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                R     W+ + K+       ++  I   +G++G ++ +A L PV +         
Sbjct: 292 YW---RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKISVIASLVPVML--------- 339

Query: 373 LHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
             ++  +K ++  G V R    DI  GD++LV  AG+ IP++ +++   R          
Sbjct: 340 --DDKRVKRVNI-GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRE--------- 387

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
                      R      G    +  C      C  Q + RL    SR A  ++G+G+  
Sbjct: 388 -----------RSKPVPPGNHFNSLTCFYASATCQEQFISRLVWLGSRAALGLDGMGEAS 436

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                ++    F       IF+       +  +I N  GF       ++   N  R    
Sbjct: 437 WRALHQTHR--FE-----HIFSW---LALTPAEIANTPGFAKGKSELIWRQFNLARRQPF 486

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R++ ++ I    A +  S  + +            ++   +  W  L   P  G+  A 
Sbjct: 487 SRWVMAMDIPLTQAALQASGDRSW----------EQLLMRTDQHWRQL---PATGERRAG 533

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG 637
            + ++  NPR       L  +  P  G
Sbjct: 534 RVSDWRDNPRIKALSRWLAAQHIPGFG 560


>gi|253987704|ref|YP_003039060.1| NAD-dependent DNA ligase LigB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779154|emb|CAQ82314.1| similar to putative dna ligase-like protein yicf of escherichia
           coli [Photorhabdus asymbiotica]
          Length = 578

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 185/430 (43%), Gaps = 72/430 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S ++ ++E  SL Q+++  D  Y Q     I D  YD L    D I      L   ++
Sbjct: 31  AWSQDKLQRETKSLMQQMARWDQLYRQKGISEIDDEVYDQL--MADLIHW---QLCLKQE 85

Query: 71  PNGPLNKIGGEMNLSLF---KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           P+        +   ++F   K+ H +    L K+ +  ++ +++      W         
Sbjct: 86  PHS-------DFPATVFPDNKLVHPVAHTGLSKLKDEREINRWLHGRLPVW--------- 129

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             L+PKIDG  +T+ Y++GK V    RG+G  G D +A    I  IP+ +  N P  + +
Sbjct: 130 --LQPKIDGVAVTLVYQQGKLVSLISRGNGSEGVDWTAKSPYISEIPQEIE-NAPPYMVL 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+++ KN  +  +              RN  +G++ R   +   + +  F+       
Sbjct: 187 QGELFLHKNGHIQQSSGSDGA--------RNRVAGLMMRKEHSPELKQVGVFIWS----- 233

Query: 248 EIFAKGQYEM---LQKMRCLGFPV----NNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
             +  G  +M   LQK+  +GFP+    ++ + +      +  +Y E       +P+  D
Sbjct: 234 --WPDGPVDMDGKLQKLANMGFPLALRYSHKIERPEQVQKLRMHYFE-----QPMPFATD 286

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K +      Q   R+ S  W ++ K   +   T++ ++   IGRTG ++ V  L+ 
Sbjct: 287 GIVLKQEIEPKGNQW--RSGSNSWAVAWKHPLRHQVTQVREVSFTIGRTGKISVVLGLDK 344

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII-- 417
           V +    ++   +            G V R  + D+  GDRV +  AG  IPK+  ++  
Sbjct: 345 VKLDDRQVSRVNI------------GSVRRWQQLDVLPGDRVTLTLAGHGIPKLAQVVWR 392

Query: 418 VNERHPDAQP 427
           + ER  D QP
Sbjct: 393 IKERQ-DIQP 401


>gi|324019686|gb|EGB88905.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 117-3]
          Length = 450

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 175/411 (42%), Gaps = 57/411 (13%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129
              PLN  G  M+     V H+              +RK + +     W ++  +     
Sbjct: 83  MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 232 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 286 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 342

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417
           +    +            G V R    DI  GD++LV  AG+ IP++ D++
Sbjct: 343 VQRVNI------------GSVRRWEEWDIAPGDQILVSLAGQGIPRIDDVV 381


>gi|115380146|ref|ZP_01467179.1| hypothetical protein STIAU_7665 [Stigmatella aurantiaca DW4/3-1]
 gi|115362851|gb|EAU62053.1| hypothetical protein STIAU_7665 [Stigmatella aurantiaca DW4/3-1]
          Length = 150

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/127 (40%), Positives = 80/127 (62%), Gaps = 3/127 (2%)

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKL 652
           D  +L RV  VG  +AQ +  F+Q P+N  A++ALL   V+P+    + N       K +
Sbjct: 21  DMEALTRVKDVGPTMAQVLHAFFQEPQNRAAIDALLAAGVTPA--PPQVNTGGPFAGKTV 78

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG +  + R +A+E + + G  VS  +SRKTD ++ G++ GSKL+KAQ+LGV++++E+
Sbjct: 79  VLTGGMTGMSRDQAKEEIERRGGKVSGSVSRKTDFVVAGEDAGSKLKKAQELGVRVLDEQ 138

Query: 713 QFLFLLQ 719
            FL LLQ
Sbjct: 139 AFLKLLQ 145


>gi|290511785|ref|ZP_06551153.1| DNA ligase (NAD+) [Klebsiella sp. 1_1_55]
 gi|289775575|gb|EFD83575.1| DNA ligase (NAD+) [Klebsiella sp. 1_1_55]
          Length = 559

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 126/622 (20%), Positives = 244/622 (39%), Gaps = 107/622 (17%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+E+S L Q+I    + Y++     + D  YD L  R       FP     +D     
Sbjct: 28  RGRQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLAQWRQCFPGATPEDD----- 82

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
                ++        H +    + K+ +   +  ++      W           ++PK+D
Sbjct: 83  -----DLPPPTGDTRHPVAHTGVRKLADEASVAHWMKNKADLW-----------VQPKVD 126

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y +G  V A  RGDG  GE  +A  R IP + ++ +  +   + ++GE+++ +
Sbjct: 127 GVAVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKLTTGELANSV-LQGELFLRR 185

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
              +    +  A G     N R   +G++ R +        L+ F+         +  G 
Sbjct: 186 EGHI----QQQAGG----MNARAKVAGLMMRADAAAAPLSQLDVFIWA-------WPDGP 230

Query: 255 YEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            +M ++ + L   GF  +     + T    V+ + + +  RS LP+  DG++ +      
Sbjct: 231 SDMRRRQQLLAQAGFGYSGQYTHSVTRVEQVAQWRQ-RWYRSPLPFVSDGVIVREGH--- 286

Query: 312 QKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +   R  SP    W+ + K+        +  I    GR+G L  VA+LEP  +    +
Sbjct: 287 --EPPGRVWSPGKGEWLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQ 426
               + +    + L           DI VGD++ +  AG+ IP++  ++    ERH   +
Sbjct: 345 QRVNVGSVARWQAL-----------DIGVGDQLQISLAGQGIPRIDAVVWRTAERH---K 390

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P                   P   K  A         CS Q L RL    S+ A +++G+
Sbjct: 391 P------------------TPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGV 432

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + L    + ++P         IF+       +  +++ + G       +L+   +  R
Sbjct: 433 G-EHLWRAIQQQNPM------THIFSW---LALTVEQLQAVPGISAARGQHLWHQFDLVR 482

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                R++ ++G+      +A+      L  +N+    + + A +   W +L   P VG+
Sbjct: 483 KRPFIRWVLAMGLPVPQGALAQ------LESENW----HLLAAKSEAQWRAL---PGVGE 529

Query: 607 IIAQAIVEFYQNPRNICAVEAL 628
           I A+ +V F  +P  +   + L
Sbjct: 530 IRARQLVAFLHHPDVVALAQWL 551


>gi|153948758|ref|YP_001399043.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis IP
           31758]
 gi|166990677|sp|A7FCR5|LIGB_YERP3 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|152960253|gb|ABS47714.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758]
          Length = 567

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 181/416 (43%), Gaps = 62/416 (14%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77
           E+++LEQ+++     Y+Q     + D  YD L  K R        PD   S+    P+  
Sbjct: 40  EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ----PIPG 95

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G        +  H +    L+K+ +   L +++      W           ++PK+DG 
Sbjct: 96  KG--------QFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++GE+      
Sbjct: 137 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 189

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           FL ++    A  +    N R+  +G L R +P+ +   +  F+         +  G   M
Sbjct: 190 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 240

Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +K   ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E    + 
Sbjct: 241 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I           
Sbjct: 300 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 346

Query: 375 NEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427
           ++ +I+ ++  G V R  + DI  GD + +  AG  IP++ +++  V++R+    P
Sbjct: 347 DDKWIRRVNI-GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 401


>gi|51594396|ref|YP_068587.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis IP
           32953]
 gi|186893383|ref|YP_001870495.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis PB1/+]
 gi|81640832|sp|Q66GE4|LIGB_YERPS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737628|sp|B2JYM4|LIGB_YERPB RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|51587678|emb|CAH19278.1| putative DNA ligase [Yersinia pseudotuberculosis IP 32953]
 gi|186696409|gb|ACC87038.1| NAD-dependent DNA ligase adenylation [Yersinia pseudotuberculosis
           PB1/+]
          Length = 567

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 177/415 (42%), Gaps = 60/415 (14%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77
           E+++LEQ+++     Y+Q     + D  YD L  K R        PD   S+    P+  
Sbjct: 40  EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ----PIPG 95

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G        +  H +    L+K+ +   L +++      W           ++PK+DG 
Sbjct: 96  KG--------QFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++GE+      
Sbjct: 137 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 189

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           FL ++    A  +    N R+  +G L R +P+ +   +  F+         +  G   M
Sbjct: 190 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 240

Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +K   ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E    + 
Sbjct: 241 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I           
Sbjct: 300 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 346

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427
           ++ +I+ ++          DI  GD + +  AG  IP++ +++  V++R+    P
Sbjct: 347 DDKWIRRVNIGSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 401


>gi|327250774|gb|EGE62476.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli STEC_7v]
          Length = 469

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 103/487 (21%), Positives = 197/487 (40%), Gaps = 91/487 (18%)

Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
           R W ++ ++     ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  IP++P+
Sbjct: 19  RLWMREHND---LWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVPQ 75

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235
            +S  +     ++GE+++ +     +  +M  +      N R+  +G+L R   +D    
Sbjct: 76  TVSGPLVNST-LQGEIFLKREGH--IQQQMGGI------NARSKVAGLLMRQGNSDTLNS 126

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR--- 292
           L  FV      +++      + LQ++   GF +        T+   V+  +E++ IR   
Sbjct: 127 LGVFVWAWPDGTQLMT----DRLQQLTTAGFTLT------QTYTRAVNNADEVERIRNEW 176

Query: 293 --STLPYDIDGLVYKVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIG 347
             + LP+  DG+V +       K+   R   P    W+++ K+        +  I   +G
Sbjct: 177 WKAKLPFVTDGVVVRA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVG 231

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRA 406
           ++G ++ VA L PV +    +    +            G V R    DI  GD++LV  A
Sbjct: 232 KSGKISVVASLVPVMLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLA 279

Query: 407 GEVIPKVVDIIV--NERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
           G+ IP++ +++    ER     P + F S      S V                      
Sbjct: 280 GQGIPRIDNVVWRGTERTKPTPPENRFNSLTCYFASDV---------------------- 317

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTST 521
           C  Q + RL    S+    ++G+G+       ++   +  FS  +             + 
Sbjct: 318 CQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTP 365

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSY 577
            +++N  G        L+   N  R     R++ ++GI      + A   RS ++   S 
Sbjct: 366 EQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFST 425

Query: 578 QNFAQEI 584
           + F Q++
Sbjct: 426 EQFWQQL 432


>gi|22124020|ref|NP_667443.1| NAD-dependent DNA ligase LigB [Yersinia pestis KIM 10]
 gi|45439907|ref|NP_991446.1| NAD-dependent DNA ligase LigB [Yersinia pestis biovar Microtus str.
           91001]
 gi|108813969|ref|YP_649736.1| NAD-dependent DNA ligase LigB [Yersinia pestis Nepal516]
 gi|145601104|ref|YP_001165180.1| NAD-dependent DNA ligase LigB [Yersinia pestis Pestoides F]
 gi|150260895|ref|ZP_01917623.1| putative DNA ligase [Yersinia pestis CA88-4125]
 gi|166213764|ref|ZP_02239799.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167419052|ref|ZP_02310805.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426671|ref|ZP_02318424.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468217|ref|ZP_02332921.1| NAD-dependent DNA ligase LigB [Yersinia pestis FV-1]
 gi|170026382|ref|YP_001722887.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis YPIII]
 gi|218927262|ref|YP_002345137.1| NAD-dependent DNA ligase LigB [Yersinia pestis CO92]
 gi|229836152|ref|ZP_04456320.1| putative DNA ligase [Yersinia pestis Pestoides A]
 gi|229839890|ref|ZP_04460049.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841972|ref|ZP_04462127.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904499|ref|ZP_04519610.1| putative DNA ligase [Yersinia pestis Nepal516]
 gi|270488499|ref|ZP_06205573.1| NAD-dependent DNA ligase OB-fold domain protein [Yersinia pestis
           KIM D27]
 gi|294502148|ref|YP_003566210.1| DNA ligase [Yersinia pestis Z176003]
 gi|123073072|sp|Q1CCZ4|LIGB_YERPN RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|123777855|sp|Q7CLB2|LIGB_YERPE RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|166226366|sp|A4TSE5|LIGB_YERPP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737629|sp|B1JQZ3|LIGB_YERPY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|21956763|gb|AAM83694.1|AE013610_6 putative enzyme [Yersinia pestis KIM 10]
 gi|45434762|gb|AAS60323.1| putative DNA ligase [Yersinia pestis biovar Microtus str. 91001]
 gi|108777617|gb|ABG20136.1| DNA ligase [Yersinia pestis Nepal516]
 gi|115345873|emb|CAL18731.1| putative DNA ligase [Yersinia pestis CO92]
 gi|145212800|gb|ABP42207.1| DNA ligase [Yersinia pestis Pestoides F]
 gi|149290303|gb|EDM40380.1| putative DNA ligase [Yersinia pestis CA88-4125]
 gi|166205166|gb|EDR49646.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963046|gb|EDR59067.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167054360|gb|EDR64177.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752916|gb|ACA70434.1| DNA ligase (NAD(+)) [Yersinia pseudotuberculosis YPIII]
 gi|229678617|gb|EEO74722.1| putative DNA ligase [Yersinia pestis Nepal516]
 gi|229690282|gb|EEO82336.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696256|gb|EEO86303.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706600|gb|EEO92606.1| putative DNA ligase [Yersinia pestis Pestoides A]
 gi|270337003|gb|EFA47780.1| NAD-dependent DNA ligase OB-fold domain protein [Yersinia pestis
           KIM D27]
 gi|294352607|gb|ADE62948.1| DNA ligase [Yersinia pestis Z176003]
 gi|320013395|gb|ADV96966.1| putative DNA ligase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 567

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 177/415 (42%), Gaps = 60/415 (14%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77
           E+++LEQ+++     Y+Q     + D  YD L  K R        PD   S+    P+  
Sbjct: 40  EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ----PIPG 95

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G        +  H +    L+K+ +   L +++      W           ++PK+DG 
Sbjct: 96  KG--------QFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++GE+      
Sbjct: 137 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 189

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           FL ++    A  +    N R+  +G L R +P+ +   +  F+         +  G   M
Sbjct: 190 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 240

Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +K   ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E    + 
Sbjct: 241 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I           
Sbjct: 300 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 346

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427
           ++ +I+ ++          DI  GD + +  AG  IP++ +++  V++R+    P
Sbjct: 347 DDKWIRRVNIGSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 401


>gi|291086421|ref|ZP_06571502.1| NAD-dependent DNA ligase adenylation domain protein [Citrobacter
           youngae ATCC 29220]
 gi|291068208|gb|EFE06317.1| NAD-dependent DNA ligase adenylation domain protein [Citrobacter
           youngae ATCC 29220]
          Length = 519

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 108/541 (19%), Positives = 205/541 (37%), Gaps = 97/541 (17%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           ++  +D Y++     + D  YD L  +       F D + S+    P+N           
Sbjct: 1   MTRWNDSYWKQGVSAVDDGVYDQLNAQLTQWQRCFGDDSSSDLSTPPINGT--------- 51

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            + H +P   + K+ + + L++++      W           ++PK+DG  +T+ Y  G 
Sbjct: 52  -IAHPVPHTGVRKLADKQALQQWMRVRSDLW-----------VQPKVDGVAVTLVYRHGN 99

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V A  RG+G  GED +  +  IP++P   +  +     ++GE++        L  E   
Sbjct: 100 LVRAISRGNGLKGEDWTQKVLLIPSVPHT-TKGLLANSTLQGEIF--------LQQEGHV 150

Query: 208 VGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
             ++   N R+  +G++ R +  ++ R L  F+        + +    E L ++   GF 
Sbjct: 151 QQQRGGMNARSKVAGMMMRQSNPELLRSLAIFIWAWPDGPAVMS----ERLAQLTAAGFS 206

Query: 268 VNNGVRQA-----NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
                 QA     +  H    ++       S LP+  DG+V +       K+   R   P
Sbjct: 207 FAQRYTQAVKNADDVEHARARWWT------SALPFVTDGVVVRSG-----KEPQARYWVP 255

Query: 323 ---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
               W+ + K+      + + DI   +G++G +  VA L PV +    +    +      
Sbjct: 256 GQGDWLAAWKYPPVAQVSEVTDIQFSVGKSGKIAVVALLAPVMLDDKRVQRVNI------ 309

Query: 380 KGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
                 G V R    DI  GDR+L+  AG+ IP+ +D +V       +P           
Sbjct: 310 ------GSVRRWNEWDIAPGDRILISLAGQGIPR-IDEVVWRSTQRTKP----------- 351

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
                   P  G+  +         C  Q + RL    +++   +EG+G    +  ++  
Sbjct: 352 -------KPPEGRFNSMTCFYATPECYEQFIARLVWLGAKEVLELEGIG----EAGWREL 400

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A+          L + Q  ST         G      ++   N  R++   R++ ++G
Sbjct: 401 HQAYRFEHIFSWLGLTQEQLQST--------LGVSKGEKIWHQFNLSRHLPFTRWVIAMG 452

Query: 559 I 559
           I
Sbjct: 453 I 453


>gi|257096605|sp|A9R666|LIGB_YERPG RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 567

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 177/415 (42%), Gaps = 60/415 (14%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77
           E+++LEQ+++     Y+Q     + D  YD L  K R        PD   S+    P+  
Sbjct: 40  EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ----PIPG 95

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G        +  H +    L+K+ +   L +++      W           ++PK+DG 
Sbjct: 96  KG--------QFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++GE+      
Sbjct: 137 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 189

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           FL ++    A  +    N R+  +G L R +P+ +   +  F+         +  G   M
Sbjct: 190 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 240

Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +K   ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E    + 
Sbjct: 241 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I           
Sbjct: 300 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 346

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427
           ++ +I+ ++          DI  GD + +  AG  IP++ +++  V++R+    P
Sbjct: 347 DDKWIRRVNIGSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 401


>gi|46401852|ref|YP_006944.1| NAD-dependent DNA ligase, subunit A [Enterobacteria phage T5]
 gi|45775030|gb|AAS77162.1| NAD-dependent DNA ligase, subunit A [Enterobacteria phage T5]
 gi|51512054|gb|AAU05253.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage T5]
          Length = 323

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 173/400 (43%), Gaps = 86/400 (21%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++++++ I    + YYQ    +I D EYD L +R       FP L     P G       
Sbjct: 1   MTNVKEFIKRCQEAYYQ-GMSLISDEEYDRLVKR-------FP-LEEEIGPKG------- 44

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
                   + H     SL+K++            Y    K   N +      K+DG  I+
Sbjct: 45  -------DIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAIS 85

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G+FV A  RG+G  G DV++ +R +  IP+ +S  +P   ++ GEV I+K     
Sbjct: 86  LLYINGEFVQALTRGNGILGNDVTSNVRLL-NIPKKISQKVP--TQITGEVLITKE---- 138

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
                         N RN ASG +   +  D       FV  +G+   IF      +   
Sbjct: 139 ------------VENKRNFASGAINLKDSDD-------FVQRIGEGGLIF------VAYG 173

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNE----MKSIRSTLPY-DIDGLVYKVDEFSLQKQL 315
           ++C    V  G+ +A     ++   NE    + ++RS   +   DG V ++++ +   + 
Sbjct: 174 IQCSAESV--GITEA-YLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNNKFFRE 230

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   + PR   + K  E+   T L  ++ Q+G +G +TPV   EPV I  A I  ATL+N
Sbjct: 231 GWTNKFPRGAFAIKEDEEGEITTLTKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNN 290

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
            DYI  L           D+ +G ++ V RAG VIP +V+
Sbjct: 291 VDYINSL-----------DLEIGCQIRVIRAGGVIPCIVE 319


>gi|108809492|ref|YP_653408.1| NAD-dependent DNA ligase LigB [Yersinia pestis Antiqua]
 gi|167402095|ref|ZP_02307572.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|123072562|sp|Q1C259|LIGB_YERPA RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|108781405|gb|ABG15463.1| putative DNA ligase [Yersinia pestis Antiqua]
 gi|167048470|gb|EDR59878.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
          Length = 567

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 178/415 (42%), Gaps = 60/415 (14%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77
           E+++LEQ+++     Y+Q     + D  YD L  K R        PD   S+        
Sbjct: 40  EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ-------P 92

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I G+    L  V HS     L+K+ +   L +++      W           ++PK+DG 
Sbjct: 93  IPGKGQF-LHPVAHS----GLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++GE+      
Sbjct: 137 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 189

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           FL ++    A  +    N R+  +G L R +P+ +   +  F+         +  G   M
Sbjct: 190 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 240

Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +K   ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E    + 
Sbjct: 241 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I           
Sbjct: 300 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 346

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427
           ++ +I+ ++          DI  GD + +  AG  IP++ +++  V++R+    P
Sbjct: 347 DDKWIRRVNIGSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 401


>gi|165926076|ref|ZP_02221908.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936320|ref|ZP_02224889.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011507|ref|ZP_02232405.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|165915934|gb|EDR34542.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921936|gb|EDR39113.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989653|gb|EDR41954.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|262360227|gb|ACY56948.1| DNA ligase, NAD-dependent [Yersinia pestis D106004]
 gi|262364173|gb|ACY60730.1| DNA ligase, NAD-dependent [Yersinia pestis D182038]
          Length = 558

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 181/416 (43%), Gaps = 62/416 (14%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77
           E+++LEQ+++     Y+Q     + D  YD L  K R        PD   S+    P+  
Sbjct: 31  EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ----PIPG 86

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G        +  H +    L+K+ +   L +++      W           ++PK+DG 
Sbjct: 87  KG--------QFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++GE+      
Sbjct: 128 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           FL ++    A  +    N R+  +G L R +P+ +   +  F+         +  G   M
Sbjct: 181 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 231

Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +K   ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E    + 
Sbjct: 232 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 290

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I           
Sbjct: 291 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 337

Query: 375 NEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427
           ++ +I+ ++  G V R  + DI  GD + +  AG  IP++ +++  V++R+    P
Sbjct: 338 DDKWIRRVNI-GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 392


>gi|162420613|ref|YP_001604687.1| NAD-dependent DNA ligase LigB [Yersinia pestis Angola]
 gi|162353428|gb|ABX87376.1| DNA ligase, NAD-dependent [Yersinia pestis Angola]
          Length = 558

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 177/415 (42%), Gaps = 60/415 (14%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77
           E+++LEQ+++     Y+Q     + D  YD L  K R        PD   S+    P+  
Sbjct: 31  EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ----PIPG 86

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G        +  H +    L+K+ +   L +++      W           ++PK+DG 
Sbjct: 87  KG--------QFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++GE+      
Sbjct: 128 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           FL ++    A  +    N R+  +G L R +P+ +   +  F+         +  G   M
Sbjct: 181 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 231

Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +K   ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E    + 
Sbjct: 232 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 290

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I           
Sbjct: 291 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 337

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427
           ++ +I+ ++          DI  GD + +  AG  IP++ +++  V++R+    P
Sbjct: 338 DDKWIRRVNIGSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 392


>gi|59897249|gb|AAX12044.1| DNA ligase [Enterobacteria phage T5]
          Length = 323

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 172/400 (43%), Gaps = 86/400 (21%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++++++ I    + YYQ    +I D EYD L +R       FP L     P G       
Sbjct: 1   MTNVKEFIKRCQEAYYQ-GMSLISDEEYDRLVKR-------FP-LEEEIGPKG------- 44

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
                   + H     SL+K++            Y    K   N +      K+DG  I+
Sbjct: 45  -------DIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAIS 85

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G+FV A  RG+G  G DV++ +R +  IP+ +S  +P   ++ GEV I+K     
Sbjct: 86  LLYINGEFVQALTRGNGILGNDVTSNVRLL-NIPKKISQKVP--TQITGEVLITKE---- 138

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
                         N RN ASG +   +  D       FV  +G+   IF      +   
Sbjct: 139 ------------VENKRNFASGAINLKDSDD-------FVQRIGEGGLIF------VAYG 173

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNE----MKSIRSTLPY-DIDGLVYKVDEFSLQKQL 315
           ++C    V  G+ +A     ++   NE    + ++RS   +   DG V ++++     + 
Sbjct: 174 IQCSAESV--GITEA-YLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNHQFFRE 230

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   + PR   + K  E+   T L  ++ Q+G +G +TPV   EPV I  A I  ATL+N
Sbjct: 231 GWTNKFPRGAFAIKEDEEGEITTLTKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNN 290

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
            DYI  L           D+ +G ++ V RAG VIP +V+
Sbjct: 291 VDYINSL-----------DLEIGCQIRVIRAGGVIPCIVE 319


>gi|318603769|emb|CBY25267.1| DNA ligase, LigB [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 565

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 181/427 (42%), Gaps = 68/427 (15%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA--IAHAFPDLA--RSED 70
           E+   E+  LE+++   +  Y+Q     I D  YD L+ +     +    PD    R   
Sbjct: 33  ERMSGEMHLLEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWRLCLGLPDKTDIRPIP 92

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            NG              K+ H +    L+K+ +   L  ++T     W           +
Sbjct: 93  GNG--------------KMLHPVAHTGLKKLKDEAALISWMTGRKDLW-----------V 127

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PKIDG  +T+ Y+ GK      RG+G  G++ +     I  IP+ ++ + P ++ ++GE
Sbjct: 128 QPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIA-SAPPLLTLQGE 186

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           V      FL +     A  +   AN R + +G L R + + +   L  F+         +
Sbjct: 187 V------FLQMEGHQQA--QSGGANARASVAGALMRKSVSPLLAKLGIFIWA-------W 231

Query: 251 AKGQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             G   M++K R L   GFP+     +       V+ + + +  +  LP+  DG+V + +
Sbjct: 232 PDGPKSMVEKSRLLQEMGFPLTAHYSEPVISSSDVAQWRD-RWFKMPLPFVTDGVVIRQE 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                +    +A    W ++ K+   Q  T + DI   +GRTG +T + ++ PV I    
Sbjct: 291 NVPAGRYW--QATPGNWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKI---- 344

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH--- 422
                  ++ +I+ ++          DI  GD+V +  AG+ IP++  +I  V++R    
Sbjct: 345 -------DDKWIRRVNIGSIARWRLWDIVPGDQVTISLAGQGIPRLDKVIWRVSQRQEIV 397

Query: 423 -PDAQPF 428
            PDA  F
Sbjct: 398 PPDADKF 404


>gi|290473319|ref|YP_003466185.1| DNA ligase [Xenorhabdus bovienii SS-2004]
 gi|289172618|emb|CBJ79387.1| DNA ligase (modular protein) [Xenorhabdus bovienii SS-2004]
          Length = 619

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 184/437 (42%), Gaps = 94/437 (21%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYD------ALKRRCDAIAHAFPDLARS 68
           E+ ++E+  L ++++  D  Y Q     I D  YD       L R C         L ++
Sbjct: 51  EKIQREMQHLTRQMAEWDQLYRQQGISEIDDEFYDQLLEILTLWRTC---------LHQT 101

Query: 69  EDPNGPLNKIGGEMNLSLFKVT--------HSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            D              S F V         H +    L K+  ++++ +++      W  
Sbjct: 102 SD--------------STFSVAVPREGKQPHPVQHTGLNKLKGVKEIHQWLQGRSVVW-- 145

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                    L+PK+DG  +T+ YEKG+ V    RG+G  G +       I  IP+ +  N
Sbjct: 146 ---------LQPKVDGVAVTLVYEKGRLVGLISRGNGSEGTNWMDKSSFITDIPKQIK-N 195

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240
            PE + ++GE++  +++    + + +A G+      R+  +G++ R +       +  F+
Sbjct: 196 APERLVLQGELFWQQDN----HRQSVAGGQ----GARSKVAGLMMRKSSAPELGQIGIFI 247

Query: 241 HGLGKTSEIFAKGQYEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS---- 293
            G       +  G  EM   L+++  +GFP           H I S  +  K   S    
Sbjct: 248 WG-------WPDGPNEMAVKLERLASMGFPTAQ-----QYSHRIFSAEDAEKRWSSYFIQ 295

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            LP+  DG+V + +     +Q   RA S  W I+ K+  +Q  T + D++ +IGRTG ++
Sbjct: 296 PLPFATDGVVLRQETEPTGRQW--RAGSNSWAIAWKYPLQQQLTTVRDVNFKIGRTGRIS 353

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPK 412
            +  LE V +    +    L            G V R  + ++  GD+V V  AG  +PK
Sbjct: 354 VLLELEKVKLDDRQVRRVNL------------GSVSRWRQWNVYPGDKVTVALAGHGVPK 401

Query: 413 VVDII--VNERHPDAQP 427
           +  ++  + ER PD QP
Sbjct: 402 LDKVVWRIAER-PDIQP 417


>gi|332159673|ref|YP_004296250.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325663903|gb|ADZ40547.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 565

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 181/427 (42%), Gaps = 68/427 (15%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA--IAHAFPDLA--RSED 70
           E+   E+  LE+++   +  Y+Q     I D  YD L+ +     +    PD    R   
Sbjct: 33  ERMSGEMHILEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWRLCLGLPDKTDIRPIP 92

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            NG              K+ H +    L+K+ +   L  ++T     W           +
Sbjct: 93  GNG--------------KMLHPVAHTGLKKLKDEAALISWMTGRKDLW-----------V 127

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PKIDG  +T+ Y+ GK      RG+G  G++ +     I  IP+ ++ + P ++ ++GE
Sbjct: 128 QPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIA-SAPPLLTLQGE 186

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           V      FL +     A  +   AN R + +G L R + + +   L  F+         +
Sbjct: 187 V------FLQMEGHQQA--QSGGANARASVAGALMRKSVSPLLAKLGIFIWA-------W 231

Query: 251 AKGQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             G   M++K R L   GFP+     +       V+ + + +  +  LP+  DG+V + +
Sbjct: 232 PDGPKSMVEKSRLLQEMGFPLTAHYSEPVISSSDVAQWRD-RWFKMPLPFVTDGVVIRQE 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                +    +A    W ++ K+   Q  T + DI   +GRTG +T + ++ PV I    
Sbjct: 291 NVPAGRYW--QATPGNWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKI---- 344

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH--- 422
                  ++ +I+ ++          DI  GD+V +  AG+ IP++  +I  V++R    
Sbjct: 345 -------DDKWIRRVNIGSIARWRLWDIVPGDQVTISLAGQGIPRLDKVIWRVSQRQEIV 397

Query: 423 -PDAQPF 428
            PDA  F
Sbjct: 398 PPDADKF 404


>gi|182682929|ref|YP_001837053.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage EPS7]
 gi|182630641|gb|ACB97573.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage EPS7]
          Length = 323

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 173/400 (43%), Gaps = 86/400 (21%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++++++ I    + YYQ    +I D EYD L +R       FP L     P G       
Sbjct: 1   MTNVKEFIKRCQEAYYQ-GMSLISDEEYDRLIKR-------FP-LEEEIGPKG------- 44

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
                   + H     SL+K++            Y    K   N +      K+DG  I+
Sbjct: 45  -------DIPHLYRMYSLQKVY------------YGRGDKAPFNPLGQVETDKLDGCAIS 85

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G+FV A  RG+G  G DV+  ++ +  IP+ +S  +P   ++ GEV I+K     
Sbjct: 86  LLYINGEFVQALTRGNGILGNDVTHNVKML-NIPKTISQKVP--TQITGEVLITKE---- 138

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
                         N RN ASG +   +  D       F+  +G+   IF      +   
Sbjct: 139 ------------VENKRNYASGAINLKDSDD-------FIQRIGEGGLIF------VAYG 173

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNE----MKSIRSTLPY-DIDGLVYKVDEFSLQKQL 315
           ++C    V  G+ +A     ++   NE    + ++RS   +   DG V ++++ +   + 
Sbjct: 174 IQCSAETV--GITEA-YLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNNKFFRE 230

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   + PR   + K  E+   T L+ ++ Q+G +G +TPV   EPV I  A I  ATL+N
Sbjct: 231 GWTNKFPRGAFAIKEDEEGEITTLVKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNN 290

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
            DYI  L           D+ +G ++ V RAG VIP +V+
Sbjct: 291 VDYINAL-----------DLEIGCQIRVIRAGGVIPCIVE 319


>gi|268592261|ref|ZP_06126482.1| DNA ligase B [Providencia rettgeri DSM 1131]
 gi|291312038|gb|EFE52491.1| DNA ligase B [Providencia rettgeri DSM 1131]
          Length = 574

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/422 (22%), Positives = 168/422 (39%), Gaps = 72/422 (17%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDAL------KRRCDAIAHA 61
           P E  + +   +E   L +++   +  Y       I D  YD L       +RC  +   
Sbjct: 41  PCEKQNSKIISQESHRLGKQLQLWNQAYRLAGSSSISDEAYDQLFNLWRSLQRCQQLPEE 100

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
            P++   E     +               H IP   L+K+ N  ++  +I      W   
Sbjct: 101 LPEVLLPEKSQLTM---------------HPIPHTGLKKL-NELEVYSWIETRKNIW--- 141

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
                   L+PK+DG  +T+ Y+ GK +    RG+   G +  A    IP IP+   +  
Sbjct: 142 --------LQPKVDGVAVTLVYKNGKLISMISRGNSVEGIEWRAKADFIPAIPK--QIKY 191

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFV 240
             ++ ++GE++   N  +          +    N RN  +G L R N PT +   +  F+
Sbjct: 192 SGMLVLQGELFWRMNGHIQ--------AKSGGVNARNKIAGWLMRKNEPTALEENIGIFI 243

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STL 295
                  +   K Q  +L +   +GFP+      A  +   +    + K +R       L
Sbjct: 244 WAW-PAGDANPKTQLTLLSE---IGFPL------AEQYSHKIENKIQAKQLREYYYQGQL 293

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           P+  DG+V K   F     L  +++   W I+ K+  +   + +  +   IGRTG ++ V
Sbjct: 294 PFATDGIVLK--NFPAPAALAWQSKQNSWAIAWKYPLRSVLSEVTKLQFNIGRTGRISVV 351

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A + P+NI    I+            ++A        RD+ VGD++LV  +G   PK+ D
Sbjct: 352 ASITPINIDSKTISK-----------VNAGSLSSWEKRDLLVGDKILVSLSGLGSPKIED 400

Query: 416 II 417
           +I
Sbjct: 401 VI 402


>gi|62129865|gb|AAX67568.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 502

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 108/520 (20%), Positives = 195/520 (37%), Gaps = 93/520 (17%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++G
Sbjct: 63  VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQG 121

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +   +          R    N R+  +G+L R +       L  F+         
Sbjct: 122 EIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA------- 166

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
           +  G   M +++  L      G    N +   V   +E++  R     S LP+  DG+V 
Sbjct: 167 WPDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVI 223

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           ++ +    +    R     W+ + K+       ++  I   +G++G +T VA L PV + 
Sbjct: 224 RMAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILD 281

Query: 365 GALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH- 422
              +    +            G V R    DI  GD++LV  AG+ IP++ +++   R  
Sbjct: 282 DKRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRER 329

Query: 423 -----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
                PD+   S   F                              C  Q + RL    S
Sbjct: 330 SKPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGS 364

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A  ++G+G+       ++    F       IF+       ++ +I N  GF       
Sbjct: 365 RSALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQ 414

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           ++   N  R     R+I ++ I    A +  S  + +            ++      W  
Sbjct: 415 IWRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQ 464

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
           L   P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 465 L---PATGERRAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 501


>gi|58699501|ref|ZP_00374229.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533981|gb|EAL58252.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 143

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 82/141 (58%), Gaps = 12/141 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L+ +I+YH+  Y+Q +KP I D+EYD LK++   +A   P++  +++       +G   +
Sbjct: 11  LQDQINYHNVLYHQKNKPEISDAEYDELKKK---LAEIEPEIYATQE------SVGAPPD 61

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               KV H  P LSLE  ++ + + KF+++I RF     ++ I    EPKIDG   +  Y
Sbjct: 62  ERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLI---EDKIEILCEPKIDGLSFSAIY 118

Query: 144 EKGKFVYAALRGDGHSGEDVS 164
           E G+FV AA RGDG  GEDV+
Sbjct: 119 EDGRFVKAATRGDGFVGEDVT 139


>gi|170767052|ref|ZP_02901505.1| NAD(+)-dependent DNA ligase LigB [Escherichia albertii TW07627]
 gi|170124490|gb|EDS93421.1| NAD(+)-dependent DNA ligase LigB [Escherichia albertii TW07627]
          Length = 561

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 129/624 (20%), Positives = 236/624 (37%), Gaps = 107/624 (17%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A  E+S L+Q+I   DD Y++  +  I DS YD L  R       F +    + 
Sbjct: 24  AWSPAKAHDEISRLQQQIKQWDDDYWKEGQSTIEDSIYDQLSARLAQWQRCFGEETNRDA 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PL+            V H +    + K+ +   + +++      W           +
Sbjct: 84  IAPPLHGT----------VMHPVAHTGVRKLTDKNAVSQWMRGRGDLW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I ++P  +S  +     ++GE
Sbjct: 123 QPKVDGVAVTLVYHDGKLSQAISRGNGLKGEDWTQKVRQISSVPHSVSGPLANST-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R+  +G++ R +       L  F+         +
Sbjct: 182 IFLQRESH--IQQQMGGM------NARSKVAGLMMRQDNAGTLNSLGVFIWA-------W 226

Query: 251 AKGQYEMLQKMRCL---GFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK- 305
             G   M  ++  L   GF +     R       +    NE    ++ LP+  DG+V + 
Sbjct: 227 PDGPQSMTDRLHLLATAGFALTQRYTRAVKNADEVECARNEW--WKAKLPFVTDGVVVRG 284

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
             E      L  +A    W+ + K+        +  I   +G++G ++ VA L PV +  
Sbjct: 285 AKEPESSHWLPGQA---DWLAAWKYQPVAQVAGVNAIQFAVGKSGKISVVASLAPVMLDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERH 422
             +    +            G V R    DI  GD++L+  AG+ IP++ D++    ER 
Sbjct: 342 KRVQRVNI------------GSVRRWQEWDIAPGDQILISLAGQGIPRIDDVVWRGAERT 389

Query: 423 PDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               P + F S      S V                      C  Q + RL    S+   
Sbjct: 390 KPVPPENRFNSLTCYFASDV----------------------CREQFISRLVWLGSKQVL 427

Query: 482 NIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
            +EG+G+       ++   +  FS        +L      +  ++ N  G        L+
Sbjct: 428 GLEGIGEAGWRTLHQTHRFEHLFS------WLSL------TPDQLHNTPGIAKSKSEQLW 475

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEI----ARSLAKYYLSYQNFAQEINNIIAHNND-- 593
              N  R     R++ ++GI    A +     RS  +     + + Q++    A      
Sbjct: 476 HQFNLARKQPFTRWVMAMGIPLTQAALNASDERSWEQLLQRTEQYWQQLPGTGARRASKV 535

Query: 594 -DWLSLIRVPLVGDII-AQAIVEF 615
            +W    ++ ++G+ + AQ I  F
Sbjct: 536 MEWKDNAQIKMLGNWLAAQQITGF 559


>gi|300725264|ref|YP_003714593.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
 gi|297631810|emb|CBJ92531.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
          Length = 577

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 184/439 (41%), Gaps = 82/439 (18%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDAL------KRRCDAIAHAFPDLARS 68
           E+ + E + L+Q+++  D  Y Q     I D  YD L       +RC             
Sbjct: 40  EKLQHETAHLKQQMAKWDHLYRQQGISEIDDEIYDQLLETLRLWQRCS-----------E 88

Query: 69  EDPNG----PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           + P G    P+++ G        K  H +    L K+  +  +R+++    + W      
Sbjct: 89  QIPEGTFAVPVSQEG--------KQPHPVQHTGLHKLKEVRGVRQWLQGRTKVW------ 134

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                L+PKIDG  +T+ YEKG+ +    RG+G  G D       I +IP+++  + PE 
Sbjct: 135 -----LQPKIDGVAVTLIYEKGQLMRLISRGNGIEGTDWMDKSPFISSIPKLIK-HAPEH 188

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           + ++GE++  +      +     VG +     R+  +G++ R  P  +  R +  F+   
Sbjct: 189 LVLQGELFWQQK-----SHRQFTVGSQ---GARSKVAGLMMRKTPEPEALRQIGIFIWS- 239

Query: 244 GKTSEIFAKGQYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
                 +  G  +M+ K   +  +GFP+        T H   +           LP+  D
Sbjct: 240 ------WPDGPTDMVAKSEQLASMGFPLTQQYSHPIT-HIDDAEKRWTDYFVQPLPFATD 292

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V + +     +Q   R  S  W I+ K+  +Q  T + D++  IGRTG ++ V  LE 
Sbjct: 293 GVVLRQEIEPTGRQW--RTGSNSWAIAWKYPLRQQVTTVKDVNFTIGRTGRISVVLMLEK 350

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           V +    ++  ++            G V R   R++  GD++ V  AG  IPK+  ++  
Sbjct: 351 VRLDDRQVSRVSI------------GSVKRWKQRNVYPGDKITVALAGHGIPKLDKVVWR 398

Query: 420 --ERH----PDAQPFSFPS 432
             ER     PD Q + F S
Sbjct: 399 MVERPVIQLPDEQHYHFLS 417


>gi|299145804|ref|ZP_07038872.1| putative BRCA1 C Terminus (BRCT) domain protein [Bacteroides sp.
           3_1_23]
 gi|298516295|gb|EFI40176.1| putative BRCA1 C Terminus (BRCT) domain protein [Bacteroides sp.
           3_1_23]
          Length = 652

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 160/714 (22%), Positives = 291/714 (40%), Gaps = 126/714 (17%)

Query: 36  YQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL-SLFKVTHSIP 94
           Y+   P I D+EYDA             +L ++ DP+    K      +    K    IP
Sbjct: 24  YRMGTPEISDAEYDAEI-----------ELLKTLDPDNEWFKHTEPAFVPETRKRALPIP 72

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL K+ +I +L+K+    Y     K +  +     PK+DG  +         +Y  L 
Sbjct: 73  MKSLNKVKDISELKKW----YMSLGLKGNAGVICM--PKLDGLSL---------LYNELT 117

Query: 155 GDGHS-------GEDVSACIRAIPTIPRVLSLNIPEIIEVR-GEVYISKNDFLALNDEMI 206
           G+ +S       G+D ++  RA      +   N         GE  I+++D+     E  
Sbjct: 118 GETYSRGGIENEGQDCTSHYRA-----SIQCYNPASCFHYTFGEFVINRSDW-----EQH 167

Query: 207 AVGRKP------YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
             G++       + +PRN A+G+L R  P D   + +FF +G+ ++S +     +  L +
Sbjct: 168 FHGKRSKFTGDIFKSPRNTAAGLLNRDEPCDYLEHASFFRYGVDESS-LHDYNNFHSLIE 226

Query: 261 MRCLGFPVNNGVRQANTFH-GIVSYYNE---MKSIRS-TLPYDIDGLVYKVDEFSLQKQL 315
             C      N  +Q + +H   +   NE   M   +  +  Y IDG+V  +D+  L + +
Sbjct: 227 TIC------NIYQQEHLYHFAFIDELNEELLMNLFKEWSKVYPIDGIVIYIDDLRLWEVI 280

Query: 316 GERARS--PRWMISHKFAEKQAS--TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           G    S  P + I++K  +   S  T + DI  ++ ++G L PV  +E V+ G   + N 
Sbjct: 281 GRHQTSGNPLYAIAYKHPDFTESFETTVKDIVWKVSKSGALKPVVNIEMVDTGDCNMENP 340

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP-FSF 430
           T +N  +I              +I  G  +LV R+G VIPK++  +      + +  +  
Sbjct: 341 TGYNAGWIN-----------DHEIAKGAEILVTRSGGVIPKILSTLTPATQEEQEKLWDE 389

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            S CP C S  + + N           C   L+C   QL ++  F        E +G++ 
Sbjct: 390 MSECPHCGSPTMWNEN-------HIELCCTNLSCPGVQLAKIIFFYL--TCGAENMGEET 440

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   F +    F+  IPA +         +   +  I GFGD S++ +    N++    +
Sbjct: 441 LSKIFNA---GFT-SIPAIL-------NITFNDLIKIEGFGD-SISKIILENNRKIMQGV 488

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +     L      ++  + + K  +  Q    E+      +++D  S  +   +      
Sbjct: 489 D-----LATLMQASDCFKGIGK--IKAQKILDEM------DDEDLCSFCQGWYINHEPDV 535

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKI-------Q 662
              +F   P     V+ LL    P +    E  +  ++  K +V  G  + +       +
Sbjct: 536 QSEDFKNCP---ITVQNLLLGYFPFMAFLEETKIPYKLSPKTVVLEGKCKGLSICVSGFR 592

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQQLGVKIMNEEQF 714
               +E +T  G  + + +S+KT  ++V D     SK+ KA+ LG+ I++ E+F
Sbjct: 593 DSNLEEVITNEGGKIVSGVSKKTTHLVVKDKSANSSKISKAKLLGIPILSIEEF 646


>gi|320177344|gb|EFW52346.1| DNA ligase , LigB [Shigella dysenteriae CDC 74-1112]
          Length = 508

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 116/563 (20%), Positives = 215/563 (38%), Gaps = 106/563 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+   +Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 24  AWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
           +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 233 S----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVR 282

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L  V 
Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVM 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++    
Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385

Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ER     P + F S      S V                      C  Q + RL    S+
Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423

Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
               ++G+G+       ++   +  FS  +             +  +++N  G       
Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471

Query: 537 NLYDSINKRRNISLERFIFSLGI 559
            L+   N  R     R++ ++GI
Sbjct: 472 QLWHQFNLARKQPFTRWVMAMGI 494


>gi|238759846|ref|ZP_04621002.1| DNA ligase B [Yersinia aldovae ATCC 35236]
 gi|238701907|gb|EEP94468.1| DNA ligase B [Yersinia aldovae ATCC 35236]
          Length = 532

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 121/584 (20%), Positives = 232/584 (39%), Gaps = 88/584 (15%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+  L +++   D  Y+Q     I D  YD L  +            + E+   P+   G
Sbjct: 4   EIKELTKQLGKWDIAYHQQGHSPIADDAYDQLVAKLHQWQLCHLPHGKQENKQ-PILGNG 62

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                   + +H +    L+K+   +D    ++     W K   N     ++PK+DG  +
Sbjct: 63  --------QFSHPVAHTGLKKL---KDEATLVS-----WMKGRKN---LWVQPKVDGVAV 103

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y  G+      RG+G  G++ +     I  IP+ + +  P ++ ++GE+      FL
Sbjct: 104 SLVYVNGELTQLISRGNGLKGQNWTDKATFISAIPQFI-VAAPPLLTLQGEL------FL 156

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL--GKTSEIFAKGQYEM 257
            +     A  +    N R + +G L R +P+ +   L   +     G  S I  KG+   
Sbjct: 157 KMEGHQQA--QSGGVNARASVAGALMRKSPSLLLPQLGILIWAWPDGPKS-IVEKGKL-- 211

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
              +R +GFP+     ++ T    V+ + +    +S LP+  DG+V + +E    +    
Sbjct: 212 ---LRIMGFPLTAEYSKSVTSSMDVTRWRQF-WFKSPLPFVTDGIVIRQEEEPAGRYW-- 265

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
           +A    W ++ K+  +Q  T + +I   IGRTG  + V ++ P+ I           ++ 
Sbjct: 266 QATPGPWSVAWKYPPQQQVTEVENIHFTIGRTGRSSVVLQVSPIKI-----------DDK 314

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           +++ ++         RDI +GD+V +  AG+ IP++ ++I      D+     P +  + 
Sbjct: 315 WVRRVNVGTIARWKQRDITLGDQVTIALAGQGIPRLENVIWRATQRDS--VVPPDWHQLH 372

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           Q    R L P+              AC AQ L RL         +I+ +           
Sbjct: 373 QWSCFRPL-PQ--------------ACEAQFLSRLIWLSGPQGLDIKNVSG-------GL 410

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
             P     +  D+         +T +I  + G G      +Y    + R      ++ +L
Sbjct: 411 WQPLIQQGLVNDLVGWLS---LTTEQIAGVPGIGHKRAEKIYQQFQQTRQKPFSDWLQAL 467

Query: 558 GIRHVGAE-------IARSLAKYYLSY---QNFAQEINNIIAHN 591
           G    G         + RS+A++       Q  A++I + + H+
Sbjct: 468 GFPLKGLNETQWQILLERSMAEWTSMAGIGQARAKQIKHFLHHH 511


>gi|330859974|emb|CBX70302.1| DNA ligase B [Yersinia enterocolitica W22703]
          Length = 527

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 177/418 (42%), Gaps = 68/418 (16%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA--IAHAFPDLA--RSEDPNGPLNKIG 79
           LE+++   +  Y+Q     I D  YD L+ +     +    PD    R    NG      
Sbjct: 4   LEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWRLCLGLPDKTDIRPIPGNG------ 57

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                   K+ H +    L+K+ +   L  ++T     W           ++PKIDG  +
Sbjct: 58  --------KMLHPVAHTGLKKLKDEAALISWMTGRKDLW-----------VQPKIDGVAV 98

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           T+ Y+ GK      RG+G  G++ +     I  IP+ ++ + P ++ ++GEV      FL
Sbjct: 99  TLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIA-SAPPLLTLQGEV------FL 151

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
            +     A  +   AN R + +G L R + + +   L  F+         +  G   M++
Sbjct: 152 QMEGHQQA--QSGGANARASVAGALMRKSVSPLLAKLGIFIWA-------WPDGPKSMVE 202

Query: 260 KMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           K R L   GFP+     +       V+ + + +  +  LP+  DG+V + +     +   
Sbjct: 203 KSRLLQEMGFPLTAHYSEPVISSSDVAQWRD-RWFKMPLPFVTDGVVIRQENVPAGRYW- 260

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
            +A    W ++ K+   Q  T + DI   +GRTG +T + ++ PV I           ++
Sbjct: 261 -QATPGNWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKI-----------DD 308

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH----PDAQPF 428
            +I+ ++          DI  GD+V +  AG+ IP++  +I  V++R     PDA  F
Sbjct: 309 KWIRRVNIGSIARWRLWDIVPGDQVTISLAGQGIPRLDKVIWRVSQRQEIVPPDADKF 366


>gi|225013054|ref|ZP_03703469.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A]
 gi|225002782|gb|EEG40763.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A]
          Length = 183

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 5/172 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ R ++ +L + +  H+  YY    PII D E+D L ++ + +    PDL    D N 
Sbjct: 1   MQEIRNKIEALREVLHDHNHRYYILDDPIISDYEFDQLLQQLNELEVQNPDLT---DLNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +  S   V H  P  SL   ++ E+L ++  R+ +     ++  I +T E K
Sbjct: 58  PTRRVGGGVTKSFETVPHKYPMYSLSNTYSKEELMQWEERLRK--SLGEETQIEYTCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
            DG  I++ YE G  + A  RGDG  G++++  +R I T+P  L  + P+  
Sbjct: 116 FDGASISLTYENGILIKAITRGDGLQGDNITTNVRTIKTVPLKLKSDFPKFF 167


>gi|32396668|gb|AAP49292.1| NAD-dependent DNA ligase [Bacillus sp. IMG-2]
          Length = 121

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 1/118 (0%)

Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNA++G LR+L+P     R L+ FV+ + +  +       E L  +  LGF  N   
Sbjct: 1   ANPRNASAGSLRQLDPKIAAKRNLDIFVYNIAELGDTGVSSHSEALDLLDELGFKTNRER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
           R+      ++   +++    S LPYDIDG+V KVD    Q+ LG  A+SPRW I++KF
Sbjct: 61  RKCKNIDEVIELLDQLLEKHSQLPYDIDGVVIKVDSLRQQEALGATAKSPRWAIAYKF 118


>gi|309800389|ref|ZP_07694554.1| DNA ligase [Streptococcus infantis SK1302]
 gi|308115980|gb|EFO53491.1| DNA ligase [Streptococcus infantis SK1302]
          Length = 240

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 58/279 (20%)

Query: 426 QPFSFPSFCPICQSRVV--------RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           +    P+ CP C S+++        R +NP+               C AQ  E L HF S
Sbjct: 4   EKLDIPTNCPSCDSKLLHFEDEVALRCINPR---------------CPAQIKEGLTHFAS 48

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVS 534
           RDA NI GLG   +   F ++     ++  ADI+ L          +E++L   G  + S
Sbjct: 49  RDAMNISGLGPSIVKKLFAAD----LVKDVADIYHL---------TVEDLLLLDGIKEKS 95

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              LY +I   +  S E+ +F LGIRHVG++ ++ L + + S ++ AQ     IA     
Sbjct: 96  AQKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLLLQNFHSIESLAQANPEEIA----- 150

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSE--IEN 649
                 +  +G +IAQ++  ++    +    E LL+E+  S   +    + V++   +  
Sbjct: 151 -----SIESLGSVIAQSLQTYFATEGS----EILLRELKESGVNLDYKGQTVAANAALSG 201

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
             +V TG L+++ R +A+  +  LGA V+  +S+K  ++
Sbjct: 202 LTVVLTGKLERLNRSEAKNKLESLGAKVTGSVSKKQTLL 240


>gi|212711586|ref|ZP_03319714.1| hypothetical protein PROVALCAL_02661 [Providencia alcalifaciens DSM
           30120]
 gi|212685688|gb|EEB45216.1| hypothetical protein PROVALCAL_02661 [Providencia alcalifaciens DSM
           30120]
          Length = 564

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 150/337 (44%), Gaps = 47/337 (13%)

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H IP   L+K+   +++  ++   +  W           L+PK+DG  +T+ YE G  
Sbjct: 109 VKHPIPHTGLKKL-EFKEIAPWLESRHEVW-----------LQPKVDGVAVTLHYENGHL 156

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
           V    RGDG  G +       I  IP+ +S  I + I ++GE++   N+ +    + I  
Sbjct: 157 VSMISRGDGSKGLNWREKADFIQGIPKTIS--IKQSIVLQGELFWKLNEHV----QKIDG 210

Query: 209 GRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
           G+    N R+  +G L R + P  +T  +  F+      S   +    + L ++  LGF 
Sbjct: 211 GQ----NARSKVAGWLMRKDMPAQVTDDIGVFIWSWPDNSTPMS----QQLSELAMLGFD 262

Query: 268 VNNGVRQANTF---HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           +    R ++       I  + +   SI  ++P+  DG+V K   F        RA    W
Sbjct: 263 LAQ--RYSHPIVESQSIAQWRDHYYSI--SMPFATDGVVLK--SFPTPSSSAWRANQNSW 316

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I+ K+  K   + ++D+  ++GR+G++  +A +EPV I    ++   L + +  K    
Sbjct: 317 SIAWKYPLKSIVSDVVDLTFRVGRSGVVNVIANIEPVRIDDKKVSKIRLGSLNSWK---- 372

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
                   +D+ VGD++ +  +G   P +  +I  ++
Sbjct: 373 -------QKDVLVGDKIQLTLSGHGAPLMEKVIWRQK 402


>gi|238750790|ref|ZP_04612288.1| DNA ligase B [Yersinia rohdei ATCC 43380]
 gi|238710934|gb|EEQ03154.1| DNA ligase B [Yersinia rohdei ATCC 43380]
          Length = 563

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 124/592 (20%), Positives = 240/592 (40%), Gaps = 93/592 (15%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH--AFPDLARSED 70
           S ++A  E++ L ++++  D  Y+Q    ++ D  YD L+ +          PD A +  
Sbjct: 29  SEKRASDEINILVKQLNQLDVAYHQQGISLLDDDIYDQLQDKLHGWRECLGLPDKANN-- 86

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
                  I G+      K+ H +    L+K+ +   L  +++     W           +
Sbjct: 87  -----TLIPGDG-----KLLHPVAHTGLKKLKDENALADWMSGREDLW-----------V 125

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y+ G+ +    RG+G  G + +     I  IP+ +S+  P  + ++GE
Sbjct: 126 QPKVDGVAVTLVYQAGELIQLLSRGNGLKGLNWTDKAPFISAIPQHISMA-PPWLTLQGE 184

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++  +    +    +        N R + +G L R   + +   L  F+       +  
Sbjct: 185 LFLQMDGHQQVQSGGV--------NARASVAGALMRKTMSPLLANLGVFIWAWPDGPKNL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + +  +LQ+M   GFP+     +  T    V  + +    ++ LP+  DG+V + +E  
Sbjct: 237 VE-KTTLLQEM---GFPLAAKYSKPVTSSQDVMQWRDF-WYQTPLPFVTDGVVIRQEEEP 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             +    RA S  W ++ K+   Q +T + DI   IGRTG +T V ++ PV I       
Sbjct: 292 AGRYW--RAASGNWSVAWKYPPLQKTTEIQDIHFTIGRTGKITVVLQVAPVKI------- 342

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQPF 428
               ++  I+ ++     +    +I VGD+V +  AG+ IP++ +++  V++R     P 
Sbjct: 343 ----DDKQIRRVNIGSLALWRQWNIAVGDQVTITLAGQGIPRLENVVWRVSQREYLIPP- 397

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
               F P+   R++                   L C  Q L RL         ++  +G+
Sbjct: 398 EKDKFHPLSCFRLLP------------------LECEPQFLSRLAWLSGPKGLDMRNVGR 439

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                F++       I       +L   Q      I  + G G V    +Y      R  
Sbjct: 440 G----FWREIVRHGLINDMVGWLSLTAEQ------IATVPGIGRVRAEKIYQQFQNTRLK 489

Query: 549 SLERFIFSLGI-------RHVGAEIARSLAKYYLSY---QNFAQEINNIIAH 590
              +++ +LG         H      RS+A++ L        A++IN+ ++H
Sbjct: 490 PFSQWLPALGFPLGGVVDSHWHPLQQRSIAEWRLISGIGAVRAKQINHFLSH 541


>gi|213622411|ref|ZP_03375194.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 445

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 106/498 (21%), Positives = 195/498 (39%), Gaps = 83/498 (16%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++G
Sbjct: 9   VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQG 67

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +   +          R    N R+ A+G+L R +       L  F+         
Sbjct: 68  EIFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWA------- 112

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
           +  G   M +++  L      G      +   V   +E++  R     S LP+  DG+V 
Sbjct: 113 WPDGPANMPERLSQL---AKAGFSLTKKYSLAVKDASEVERARQSWLTSALPFVTDGVVI 169

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           ++ +    +    R     W+ + K+       ++  I   +G++G +T VA L PV + 
Sbjct: 170 RMAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILD 227

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV--NERH 422
              +    + +   +K  +A         DI  GD++LV  AG+ IP++ +++    ER 
Sbjct: 228 DKRVQRVNIGS---VKRWEAW--------DIAPGDQILVSLAGQGIPRLDEVVWRSRERS 276

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
               P S                N  T    +A        C  Q + RL    SR A  
Sbjct: 277 KPVPPGS--------------HFNSLTCFYASA-------TCQEQFISRLVWLGSRSALG 315

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           ++G+G+       ++    F       IF+       ++ +I N  G        ++   
Sbjct: 316 LDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGVAKGKSEQIWRQF 365

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N  R  S  R+I ++ I    A +  S  + +            ++      W  L   P
Sbjct: 366 NLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL---P 412

Query: 603 LVGDIIAQAIVEFYQNPR 620
             G+  A  ++++  NP+
Sbjct: 413 ATGERRAGRVIDWRNNPQ 430


>gi|145640786|ref|ZP_01796369.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|145274712|gb|EDK14575.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21]
          Length = 150

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 11/143 (7%)

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
           N A     + A  + +   L +VP VG+++A  I  F++   N+  VE L+ +     G 
Sbjct: 8   NLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQ-----GV 62

Query: 639 HEKNV----SSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           H + V    +SE   ++K +V TGTL ++ R++A+  + QLGA VS  +S KTD +I GD
Sbjct: 63  HWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGD 122

Query: 693 NPGSKLEKAQQLGVKIMNEEQFL 715
             GSKL KAQ+L + ++ EE+FL
Sbjct: 123 AAGSKLAKAQELNITVLTEEEFL 145


>gi|153834101|ref|ZP_01986768.1| DNA ligase [Vibrio harveyi HY01]
 gi|148869566|gb|EDL68561.1| DNA ligase [Vibrio harveyi HY01]
          Length = 124

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 2/124 (1%)

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFT 655
           +I V  +G I+A+ I  F+   +N   V+ LL +    P I   ++ V   +E K +V T
Sbjct: 1   MIEVQDIGVIVAKHITTFFGEEKNQAVVQDLLAQGINWPEIAAPQEGVELPLEGKTVVLT 60

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL ++ R +A+E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L
Sbjct: 61  GTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLL 120

Query: 716 FLLQ 719
            L++
Sbjct: 121 NLMK 124


>gi|77407286|ref|ZP_00784228.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
 gi|77174105|gb|EAO77032.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
          Length = 223

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 116/246 (47%), Gaps = 42/246 (17%)

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +V            A RC   L C  Q  ERL HF SRDA NI G G   
Sbjct: 4   PKLCPSCGSELVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSL 56

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRN 547
           ++  F     A  I   ADI+ L          IEN+L   G  + S T +Y +I   + 
Sbjct: 57  VEKLF----DAHLIADVADIYRLS---------IENLLTLDGIKEKSATKIYHAIQSSKE 103

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S E+ +F LGIRHVG++ +R L + + + +  +Q     IA           +  +G +
Sbjct: 104 NSAEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGV 153

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQ 662
           IA+++  F++       V+ LL+E++    +     K VS++ +   L  V TG L+K+ 
Sbjct: 154 IAKSLHTFFEKEE----VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMT 209

Query: 663 RHKAQE 668
           R++A+E
Sbjct: 210 RNEAKE 215


>gi|320185697|gb|EFW60455.1| DNA ligase , LigB [Shigella flexneri CDC 796-83]
          Length = 411

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 171/416 (41%), Gaps = 67/416 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+   +Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 7   AWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 65

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 66  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 104

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 105 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 163

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 164 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 215

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
           +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 216 S----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVR 265

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L  V 
Sbjct: 266 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVM 320

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++
Sbjct: 321 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVV 364


>gi|312831438|emb|CAP78100.2| Uncharacterized DNA ligase-like protein yicF [Escherichia coli
           LF82]
          Length = 505

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 101/473 (21%), Positives = 185/473 (39%), Gaps = 88/473 (18%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R   +D    L  FV         
Sbjct: 125 EIFLQRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA------- 169

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
           +  G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 170 WPDGPHLMTDRLKDL---ATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVV 226

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 227 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 281

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    I    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 282 MLDDKKIQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 329

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 330 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 367

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 368 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 415

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 416 AQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|332089533|gb|EGI94637.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           boydii 3594-74]
          Length = 417

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 171/416 (41%), Gaps = 67/416 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+   +Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 13  AWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 71

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 72  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 110

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 111 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 169

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++ 
Sbjct: 170 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 221

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305
           +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V +
Sbjct: 222 S----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVR 271

Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
                  K+   R   P    W+++ K+        +  I   +G++G ++ VA L  V 
Sbjct: 272 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVM 326

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417
           +    +    +            G V R    DI  GD++LV  AG+ IP++ D++
Sbjct: 327 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVV 370


>gi|325662259|ref|ZP_08150874.1| hypothetical protein HMPREF0490_01612 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471511|gb|EGC74732.1| hypothetical protein HMPREF0490_01612 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 260

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 124/258 (48%), Gaps = 23/258 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ ++ +  L Q ++     YYQ +K I+ + EYD L    D +     +L  +   N 
Sbjct: 1   MEQKKQRMQELVQLLNQAGKAYYQDAKEIMSNHEYDRL---YDELLVLEQELGITM-ANS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K    + L++F+       +KK        +  K
Sbjct: 57  PTVNVGYEVLSELPKERHEKPMLSLDKTKETDRLKEFVG------EKKA------VISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + YE G+   A  RG+G  GE ++   +    +P  ++    E+I +RGE  I
Sbjct: 105 LDGLTIVLTYENGELKKAVTRGNGEVGEVITNNAKVFQNVPLRIAYR-GELI-LRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-F 250
              DF  +N+E+  V  K Y NPRN  SG +R+LN  +IT  R + F+   L K   + F
Sbjct: 163 GYRDFEKINEEIEDVDAK-YKNPRNLCSGSVRQLN-NEITARRNVQFYAFSLVKAEGVDF 220

Query: 251 AKGQYEMLQKMRCLGFPV 268
              +   L+ ++  GF V
Sbjct: 221 QNSRNIQLEWLKEQGFDV 238


>gi|332997449|gb|EGK17065.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-218]
          Length = 505

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 98/466 (21%), Positives = 186/466 (39%), Gaps = 74/466 (15%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++
Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 176

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             P          ++R     NP T    +         C  Q + RL    S+    ++
Sbjct: 336 TPP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLD 374

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 375 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQF 422

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  RN    R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 423 NLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|207110372|ref|ZP_03244534.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 108

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 69/109 (63%), Gaps = 11/109 (10%)

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           +DG+V  V+E  +QK+LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA L
Sbjct: 11  LDGMVIVVNELGIQKELGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALL 70

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           EP+ I GA++T ATLHN   I+            ++I + DRV+V R+G
Sbjct: 71  EPIEIAGAMVTKATLHNYSEIE-----------KKNIMLNDRVVVIRSG 108


>gi|322835054|ref|YP_004215081.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602]
 gi|321170255|gb|ADW75954.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602]
          Length = 565

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 124/626 (19%), Positives = 231/626 (36%), Gaps = 98/626 (15%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRR----CDAIAHAFPDLARSED 70
           E+  +E   L  +++  D  Y+Q     I DS YD L+++        +   P+L     
Sbjct: 33  ERLTQETHHLTAQLTQWDAAYHQSGSSPIEDSVYDHLRQKQRLWLQCASQPVPELTVPAS 92

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +               + TH +    L K+ +   +  ++      W           +
Sbjct: 93  DDA--------------EFTHPVAHTGLHKMKDKHAVANWMQGRKNLW-----------V 127

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PKIDG  +++ Y  G+      RGDG  G++ +    +IP IP  +    PE+I ++GE
Sbjct: 128 QPKIDGVAVSLIYRYGQLAALVSRGDGEKGQNWTVKAASIPAIPLHIPDMSPELI-LQGE 186

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +Y+     L    +  A G     N R+  +G + R + +D+ +    F+        + 
Sbjct: 187 LYL-----LMTGHQQSADGG---MNARSKVAGAMMRASASDLLKQTGIFIWSWPDGPTLM 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A    + L+K+   GFPV      A +    V  + E       LP+  DG+V +  E  
Sbjct: 239 A----DHLEKLSQFGFPVVAQFTHAVSAVEDVEKWRE-DWFHQPLPFATDGVVVRQQEEP 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             K    + +   W ++ K+   +  T +  I    GR+G +T +  L+P+ +   L++ 
Sbjct: 294 AGKYW--QNKPAVWAVAWKYPPARQLTDVTGITTTTGRSGKVTVILNLKPLRLDDKLVSK 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            ++ +    +             D+  GD+V V  AG+ IP++ ++          P   
Sbjct: 352 VSVGSVSRFRQW-----------DVLPGDQVAVALAGQGIPRLDEVTWRVSKRTEMPLPE 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+     +   +    P+ G             C  Q L RL      +A ++ G G   
Sbjct: 401 PT-----RYNALSCFTPEPG-------------CMQQFLSRLIWLSGPEALDMAGFGGAT 442

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 +         PAD  +L      +  ++  + G G      L   I+  R  S 
Sbjct: 443 WQKLLDAS--------PAD--SLISWLSFNEKELAAVPGIGVKQAQKLMAQIHLAREKSF 492

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R++ ++G              + L +    Q  N +    + DW        +G   A 
Sbjct: 493 RRWLSAIG-----------FPSFALGFAERQQSWNRLKQLTSRDWE---MTEGIGRKRAA 538

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI 636
            + +F  +P      EAL +   P+ 
Sbjct: 539 QVFDFIHHPDVEILTEALRQAQLPAF 564


>gi|281180692|dbj|BAI57022.1| putative DNA ligase [Escherichia coli SE15]
          Length = 505

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/473 (21%), Positives = 185/473 (39%), Gaps = 88/473 (18%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R   +D    L  FV         
Sbjct: 125 EIFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA------- 169

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
           +  G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 170 WPDGPHLMTDRLKDL---ATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVV 226

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 227 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPV 281

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 282 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 329

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 330 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 367

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 368 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 415

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 416 AQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|320193847|gb|EFW68480.1| DNA ligase, LigB [Escherichia coli WV_060327]
          Length = 505

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/473 (21%), Positives = 185/473 (39%), Gaps = 88/473 (18%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R   +D    L  FV         
Sbjct: 125 EIFLQRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA------- 169

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
           +  G + M  +++ L      G     T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 170 WPDGPHLMTDRLKDL---ATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVV 226

Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +       K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 227 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPV 281

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++   
Sbjct: 282 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 329

Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER     P + F S      S V                      C  Q + RL    S
Sbjct: 330 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 367

Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +    ++G+G+       ++   +  FS  +             +  +++N  G      
Sbjct: 368 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 415

Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 416 AQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|300907689|ref|ZP_07125317.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 84-1]
 gi|301303881|ref|ZP_07210000.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 124-1]
 gi|300400625|gb|EFJ84163.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 84-1]
 gi|300840844|gb|EFK68604.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 124-1]
 gi|315254034|gb|EFU34002.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 85-1]
          Length = 505

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/471 (20%), Positives = 188/471 (39%), Gaps = 84/471 (17%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 176

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304
            +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+V 
Sbjct: 177 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 226

Query: 305 K-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           +   E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +
Sbjct: 227 RGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVML 283

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--E 420
               +    +            G V R    DI  GD++LV  AG+ IP++ D++    E
Sbjct: 284 DDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAE 331

Query: 421 RHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           R     P + F S      S V                      C  Q + RL    S+ 
Sbjct: 332 RTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQ 369

Query: 480 AFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
              ++G+G+       ++   +  FS  +             +  +++N  G        
Sbjct: 370 VLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQ 417

Query: 538 LYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           L+   N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 418 LWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|265763497|ref|ZP_06092065.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16]
 gi|263256105|gb|EEZ27451.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16]
          Length = 652

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 160/713 (22%), Positives = 288/713 (40%), Gaps = 124/713 (17%)

Query: 36  YQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS-LFKVTHSIP 94
           Y+   P I D+EYDA             +L ++ DP+    K      +S   K    IP
Sbjct: 24  YRMGAPEISDAEYDAEI-----------ELLKTLDPDNEWFKHTEPAFVSETRKRALPIP 72

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL K+ +I +L+K+    Y     K +  +     PK+DG  +         +Y  L 
Sbjct: 73  MKSLNKVKDISELKKW----YMSLGLKGNAGV--VCMPKLDGLSL---------LYNELT 117

Query: 155 GDGHS-------GEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           G+ +S       G+D +   +A        S          GE  I+++D+     E   
Sbjct: 118 GEAYSRGGIENEGQDCTNHYQASTQCYNPAS----SFHYTFGEFVINRSDW-----EQHF 168

Query: 208 VGRKP------YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
            G++       + +PRN A+G+L R  P D   + +FF +G+ ++S +     +  L + 
Sbjct: 169 HGKRSKFTGDIFKSPRNTAAGLLNRDEPCDYLEHASFFRYGVDESS-LHDYNNFHSLIET 227

Query: 262 RCLGFPVNNGVRQANTFH-GIVSYYNE---MKSIRS-TLPYDIDGLVYKVDEFSLQKQLG 316
            C      N  +Q + +H   +   NE   M   +  +  Y IDG+V  VD+  L + +G
Sbjct: 228 IC------NIYQQEHLYHFAFIDELNEELLMNLFKEWSKIYPIDGIVIYVDDLRLWEVIG 281

Query: 317 ERARS--PRWMISHKFAEKQAS--TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
               S  P + I++K  +   S  T +  I  ++ ++G L PV  +E V+ G   + N T
Sbjct: 282 RHQTSGNPLYAIAYKHPDFTESFETTVKGIVWKVSKSGALKPVVNIEMVDTGDCNMENPT 341

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP-FSFP 431
            +N  +I              +I  G  +LV R+G VIPK++  +      + +  +   
Sbjct: 342 GYNAGWIN-----------DHEIAKGAEILVTRSGGVIPKILSTLSPATQEEQEKLWDEM 390

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C S  + + N           C    +C   QL ++  F        E +G++ L
Sbjct: 391 SECPHCGSSTMWNEN-------HIELCCTNPSCPGVQLAKIIFFYL--TCGAENMGEETL 441

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              F +    F+  IPA +         +   +  I GFGD S++N+    N++    ++
Sbjct: 442 SKIFNA---GFT-SIPAIL-------NVTFNDLIKIEGFGD-SISNIILENNRKIMQGVD 489

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
                L      ++  + + K  +  Q    E+      +++D  S  +   +       
Sbjct: 490 -----LATLMQASDCFKGIGK--IKAQKILDEM------DDEDLCSFCQGWYINHEPDVQ 536

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKI-------QR 663
             +F   P     V+ LL    P +    E  +  ++  K  V  G  + +       + 
Sbjct: 537 SEDFKNCP---ITVQNLLLGYFPFMAFLEETKIPYKLSPKTAVLEGKCKGLSICVSGFRD 593

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQQLGVKIMNEEQF 714
              +E +T  G  + + +S+KT  ++V D     SK+ KA+ LG+ I++ E+F
Sbjct: 594 SNLEEVITNEGGKIVSGVSKKTTHLVVKDKSANSSKISKAKLLGIPILSIEEF 646


>gi|261884680|ref|ZP_06008719.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 212

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 40/241 (16%)

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NI+GLG   ++  ++         I  DI  + R  + S   +E   GF    ++NL  
Sbjct: 1   MNIDGLGDAIVELLYQK-------NIIKDIADIYRLDELSFIGLE---GFKTKKISNLLS 50

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +IN  +  +L++FI SLGI H+G   A+ +A  Y                  D WL L  
Sbjct: 51  AINNSKTPNLDKFIASLGIEHIGEVAAKKIANNY-----------------GDRWLELTL 93

Query: 601 VPL-----VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLV 653
             L      G+ +A + +EF +   N+  ++ LL+ ++P +   E   N+ S    K +V
Sbjct: 94  EELLALDGFGEAMALSYLEFMR--VNLEKIKELLEFITPKMQNLELKTNIFS---GKTVV 148

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL +  R + +  +   GA VS+ +S+KTD ++ G+  GSKLEKA +LGV+ ++E +
Sbjct: 149 ITGTLSR-SRDEFKAELESYGAKVSSSVSKKTDFVLYGNEAGSKLEKANELGVRAIDESE 207

Query: 714 F 714
           +
Sbjct: 208 Y 208


>gi|332997757|gb|EGK17368.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-272]
 gi|333013292|gb|EGK32664.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-227]
          Length = 505

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/467 (20%), Positives = 184/467 (39%), Gaps = 76/467 (16%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++
Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 176

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 421

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  RN    R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 422 FNLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|153831338|ref|ZP_01984005.1| DNA ligase [Vibrio cholerae 623-39]
 gi|148873180|gb|EDL71315.1| DNA ligase [Vibrio cholerae 623-39]
          Length = 159

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 5/156 (3%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L + +  H   YY    P I D+EYD L R    +  A P+L  S+ P+    ++
Sbjct: 6   QRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK+DG  
Sbjct: 63  GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
           +++ YE G    AA RGDG +GE+++  +R I +IP
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIP 156


>gi|323173255|gb|EFZ58884.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli LT-68]
          Length = 505

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 98/467 (20%), Positives = 183/467 (39%), Gaps = 76/467 (16%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++
Sbjct: 125 EIFLQREGH--IQQQMGGI------NARTKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 176

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G        ++   +  FS  +             +  +++N  G        L+  
Sbjct: 374 DGIGGAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 421

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  RN    R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 422 FNLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|320191301|gb|EFW65951.1| DNA ligase , LigB [Escherichia coli O157:H7 str. EC1212]
 gi|326339852|gb|EGD63659.1| DNA ligase , LigB [Escherichia coli O157:H7 str. 1125]
          Length = 505

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 97/467 (20%), Positives = 185/467 (39%), Gaps = 76/467 (16%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 176

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+       ++  I   +G++G ++ VA L PV +    
Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKK 287

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 421

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 422 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|320201328|gb|EFW75909.1| DNA ligase, LigB [Escherichia coli EC4100B]
          Length = 505

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 97/467 (20%), Positives = 184/467 (39%), Gaps = 76/467 (16%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 176

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 421

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 422 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|209921119|ref|YP_002295203.1| NAD-dependent DNA ligase LigB [Escherichia coli SE11]
 gi|209914378|dbj|BAG79452.1| putative DNA ligase [Escherichia coli SE11]
          Length = 505

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 97/467 (20%), Positives = 184/467 (39%), Gaps = 76/467 (16%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 176

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 288 VQRVNI------------GSVRRWEEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 421

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 422 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|323182437|gb|EFZ67841.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 1357]
          Length = 469

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 97/467 (20%), Positives = 184/467 (39%), Gaps = 76/467 (16%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 30  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 88

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 89  EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 140

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 141 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 194

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 195 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 251

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 252 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 299

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 300 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 337

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 338 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 385

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 386 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 432


>gi|323160743|gb|EFZ46679.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli E128010]
          Length = 505

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 97/467 (20%), Positives = 184/467 (39%), Gaps = 76/467 (16%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 176

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 421

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 422 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|323155299|gb|EFZ41482.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli EPECa14]
 gi|323177651|gb|EFZ63235.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 1180]
          Length = 505

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 97/467 (20%), Positives = 184/467 (39%), Gaps = 76/467 (16%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R + +D    L  FV       ++
Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 176

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 421

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 422 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|217032017|ref|ZP_03437518.1| hypothetical protein HPB128_187g44 [Helicobacter pylori B128]
 gi|216946327|gb|EEC24933.1| hypothetical protein HPB128_187g44 [Helicobacter pylori B128]
          Length = 157

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 15/170 (8%)

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I +LGI H+G   +++LA+Y L          N++  +  ++L +      G  +A+++V
Sbjct: 2   INALGIEHIGKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLV 48

Query: 614 EFY-QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            FY  N   I ++  LL   +  +   ++  SS   NK +V TGTL K ++  AQ  +  
Sbjct: 49  NFYASNQEFIRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLEN 107

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           LGA +S+ +S KTD +I G+NPGSKL  A++ GV ++NEE+ L  L++ +
Sbjct: 108 LGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKELD 157


>gi|332996128|gb|EGK15755.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri VA-6]
          Length = 505

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 97/467 (20%), Positives = 183/467 (39%), Gaps = 76/467 (16%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++
Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 176

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV   G+ IP++ D++    ER   
Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLGGQGIPRIDDVVWRGAERTKP 335

Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             P + F S      S V                      C  Q + RL    S+    +
Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373

Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +G+G+       ++   +  FS  +             +  +++N  G        L+  
Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 421

Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
            N  RN    R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 422 FNLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|323166867|gb|EFZ52606.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           sonnei 53G]
          Length = 505

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 103/503 (20%), Positives = 192/503 (38%), Gaps = 97/503 (19%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++
Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 176

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRA-- 228

Query: 309 FSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
               K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV +  
Sbjct: 229 ---AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDD 285

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERH 422
             +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER 
Sbjct: 286 KKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERT 333

Query: 423 PDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               P + F S      S V                      C  Q + RL    S+   
Sbjct: 334 KPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVL 371

Query: 482 NIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
            ++G+G+       ++   +  FS  +             +  +++N  G        L+
Sbjct: 372 GLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLW 419

Query: 540 DSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
              N  R     R++ ++GI      + A   RS ++   S + F Q             
Sbjct: 420 HQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQ------------- 466

Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618
               R+P  G   A+ ++E+ +N
Sbjct: 467 ----RLPGTGSGRARQVIEWKEN 485


>gi|313647479|gb|EFS11929.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri 2a str. 2457T]
 gi|332749898|gb|EGJ80310.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-671]
 gi|332764151|gb|EGJ94388.1| DNA ligase [Shigella flexneri 2930-71]
 gi|333012849|gb|EGK32226.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-304]
          Length = 505

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/466 (20%), Positives = 185/466 (39%), Gaps = 74/466 (15%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  + + +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGPLANST-LQG 124

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++ +     +  +M  +      N R   +G++ R   +D    L  FV       ++
Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 176

Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307
                 + L+++   GF +     R       +    NE    ++ LP+  DG+V +   
Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
           +    +            G V R    DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             P          ++R     NP T    +         C  Q + RL    S+    ++
Sbjct: 336 TPP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLD 374

Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           G+G+       ++   +  FS  +             +  +++N  G        L+   
Sbjct: 375 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQF 422

Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
           N  RN    R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 423 NLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468


>gi|117306975|emb|CAL25732.1| hypothetical protein [Bacillus halodurans]
          Length = 143

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 3/121 (2%)

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVF 654
           LI VP VGDI+A +IV F+++  N  +V+ LL+  V P      K VS++     K +V 
Sbjct: 8   LIAVPDVGDIVADSIVSFFEDEVNKMSVQRLLEFGVHPQPIEKPKPVSTDSYFYGKTVVL 67

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL  + R +A   +   GA V+  +S+KTD++I G+  GSKL KA+QLG+ ++ +E  
Sbjct: 68  TGTLHLMTREEATAKLEACGAKVTGSVSKKTDLVIAGEKAGSKLAKAEQLGIPVITDENE 127

Query: 715 L 715
           L
Sbjct: 128 L 128


>gi|167751779|ref|ZP_02423906.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216]
 gi|167660694|gb|EDS04824.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216]
          Length = 323

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 112/238 (47%), Gaps = 21/238 (8%)

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IEGLG++ ++  F++      +   AD++ L+  Q     ++      G+ S  N+  
Sbjct: 1   MDIEGLGEETVELLFENG----LLHDIADLYDLRAEQLACLPRL------GEKSAENIIR 50

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           SI     +  +R +F+LGIR VG   A+ LA ++ +         + + H   +   LI 
Sbjct: 51  SIRGSVEVPFQRVLFALGIRFVGETTAKYLAAHFRTL--------DAVMHATRE--ELIE 100

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
              VG  IA AI++++ +  N+  +E L K    +   H+   S  +  K  V TG    
Sbjct: 101 ADEVGGKIADAIIDYFADAENLRIIERLRKAGLQTEAAHKALESESLAGKNFVITGRFSG 160

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
             R + +E +   G    A +S   + ++ G   G  K++KA QLGV+++ EE+ L +
Sbjct: 161 HSRDELKELIEAHGGKNLAGVSGNVEFLVAGKKIGPGKIQKATQLGVRLIPEEELLAM 218


>gi|213427119|ref|ZP_03359869.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 93

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 56/87 (64%)

Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334
           A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++KF  K+
Sbjct: 6   AENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFPVKE 65

Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPV 361
              +LL +D  +GRTG++TP A L PV
Sbjct: 66  KEAQLLSVDWTVGRTGVVTPTANLTPV 92


>gi|23011876|ref|ZP_00052108.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 114

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 72/112 (64%), Gaps = 5/112 (4%)

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++++F+  P N  AV ALL++V+  P    H    ++    K +VFTGTL+K+ R +A+ 
Sbjct: 5   SLIQFFSEPHNDAAVRALLEQVNTEPLASTHS---AAAFAGKTVVFTGTLEKMTRSEAKA 61

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              +LGA VS  +S KTD+++ G   GSKL+ A++ GVK+++E+ +L +L +
Sbjct: 62  TAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAERHGVKVVSEDAWLEMLAE 113


>gi|282599848|ref|ZP_05972113.2| NAD-dependent DNA ligase adenylation domain protein [Providencia
           rustigianii DSM 4541]
 gi|282567376|gb|EFB72911.1| NAD-dependent DNA ligase adenylation domain protein [Providencia
           rustigianii DSM 4541]
          Length = 557

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 167/408 (40%), Gaps = 82/408 (20%)

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H +P   L+K  N+ ++  +I +    W           L+PK+DG  +++ Y+ G+ 
Sbjct: 93  VKHPLPHTGLKKQ-NLNEITTWIAKRKEIW-----------LQPKVDGVAVSLVYDNGQL 140

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
           V    RG+G  G +       I        L++P++I ++  V +    F  LN+ +   
Sbjct: 141 VSLISRGNGVEGLEWRKKADFI--------LDLPKVIPIKQRVILQGELFWKLNNHV--- 189

Query: 209 GRKPYA--NPRNAASG-ILRRLNPTDITRYLNFFVHGLGKTSEIFAKG---QYEMLQKMR 262
            +K     N R+  +G ++R+  P  I   +  F+         +  G   Q   L ++ 
Sbjct: 190 -QKQLGGLNARSKVAGWLMRKKLPEKIEDNIGIFIWA-------WPDGDLQQEVQLSRLS 241

Query: 263 CLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
            +GF ++     Q  +   I+    +  S  + LP+  DG+V K   F        ++  
Sbjct: 242 EIGFDLSKRYSHQVTSIEQIIQRQEDYFS--TPLPFATDGIVLK--SFPTPPSAAWQSNQ 297

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
             W I+ K+  +   + +  +   +GRTGI+  VA ++PV +    +++  L + +  K 
Sbjct: 298 NSWAIAWKYPLQNIISEITGLKFGVGRTGIVNVVASIKPVTLDAKQVSHVNLGSLNSWK- 356

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +D+ VGD + +  AG  IPKV  +I    H D                 
Sbjct: 357 ----------KKDLLVGDHIQLTLAGHGIPKVEQVIWRVAHRDY---------------- 390

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
                P+T  L   +R +    C +  +E L  FV+R    +  LGKQ
Sbjct: 391 -----PETMLLEQFNRWS----CFSYSIECLPQFVAR----LTWLGKQ 425


>gi|149912310|ref|ZP_01900877.1| NAD-dependent DNA ligase [Moritella sp. PE36]
 gi|149804613|gb|EDM64677.1| NAD-dependent DNA ligase [Moritella sp. PE36]
          Length = 171

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +L +F++SLGIR VG   A           N A ++  + A        LI +  VG
Sbjct: 4   KHTTLAKFLYSLGIREVGEATA----------ANLANDLLTLDAIKKASVERLILISDVG 53

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRH 664
           DI+A+ I  F++   N+  +  LL+          K  S + +     V TGTL  I R 
Sbjct: 54  DIVAKHIYYFFREAHNLEVIVQLLEAGMSWDDVAVKEASQQPLLGAIYVITGTLVNISRA 113

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            A+  +  LGA V+  +S+KT  ++ G   GSKL KAQ+LG+ I+ E+  L LL
Sbjct: 114 DAKTRLQDLGAKVAGSVSKKTTALVAGPAAGSKLTKAQELGIDILTEDDLLALL 167


>gi|33322831|gb|AAQ07151.1|AF496461_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis]
          Length = 128

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 18/132 (13%)

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           ++PV + G  +  A+LHN D +  LD           +R+G  V + +AG++IP++ +++
Sbjct: 2   MDPVRLXGTTVARASLHNPDLLAKLD-----------VRLGXTVKLHKAGDIIPEISEVV 50

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           +++R  D+ P+  P+ CP C   +V  LN +      A RC    +C AQ  E + HF S
Sbjct: 51  LSKRPEDSVPYEVPTKCPSCGEDLVH-LNEEV-----ALRCINP-SCPAQVEEGITHFAS 103

Query: 478 RDAFNIEGLGKQ 489
           R A NI GLG +
Sbjct: 104 RQAMNIAGLGPK 115


>gi|289679599|ref|ZP_06500489.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           FF5]
          Length = 109

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 17/120 (14%)

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           + NATLHN D         +V R G  + +GD V+++RAG+VIP+VV ++   R  +A+ 
Sbjct: 1   VANATLHNMD---------EVARLG--LMIGDTVIIRRAGDVIPQVVQVVAERRPENARA 49

Query: 428 FSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAF 481
              P  CP+C S V R   +    GK      A +RC G LAC AQ  + + H+VSR A 
Sbjct: 50  VQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAL 109


>gi|291335083|gb|ADD94712.1| NAD dependent DNA ligase [uncultured phage MedDCM-OCT-S09-C23]
          Length = 717

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 153/677 (22%), Positives = 261/677 (38%), Gaps = 164/677 (24%)

Query: 115 YRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG-----KFVYAALRGDGHSGEDVSACIR- 168
           +  W+KK     + T+E K DG    + YEK      + +Y+  RG G +G+D+S  I+ 
Sbjct: 124 FNAWKKKYPKGPY-TIEGKADGISCLLIYEKKNGTIKRTIYS--RGTGKTGKDLSRYIQN 180

Query: 169 ---AIPTIPRVLSLNIP--EIIEVRGEVYISKNDFLALNDEMIAVGRKPYA----NPRNA 219
                  IP     + P    I +RGE+ +              V ++ Y+    NPRN 
Sbjct: 181 LRDGFNLIPSGEDFDFPPENKIVIRGELVMR-----------YRVWKRKYSDDFSNPRNI 229

Query: 220 ASG-ILRRLNPTDITRYLNFFVH-GLGKTSEIFAKGQYEMLQKMRCLGFPV--------N 269
             G + ++ N    TR + F  +  L   +E     +++ ++ ++ +GF          N
Sbjct: 230 VGGFVTKKTNSGVSTRDIEFVSYEKLVPRNET----RFDQIKTLKRMGFATVEVSQLTKN 285

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
           + + + N F         +KS R   PY+IDGLV   D+         R  S + ++   
Sbjct: 286 SELTEKNLFK-------ILKSFRKKSPYEIDGLVVFADD-------KVRKVSDKEVLDSA 331

Query: 330 FAEK----QASTRLLDIDIQIGRTGILTPVARLEPVNIG---------GALITNATLHNE 376
           FA K     A   ++ ++     T  L PV   +PV IG         GAL   AT  N 
Sbjct: 332 FAYKVNAQTAIAEVVGVEWSSSTTNALKPVVVYKPVTIGRVMEDGSIVGALYRRATAFNA 391

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           ++IK              I  G ++L+ R+G+VIP  ++ I+ +  PD      P+    
Sbjct: 392 NFIK-----------KNKIGPGAKLLIVRSGDVIPH-IEQILKQGKPD-----LPNKARA 434

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---QQLDF 493
            Q +               +   G    + +  +        D F +E L     QQ+D 
Sbjct: 435 AQPK---------------YNYKGHPEINFEWGDGKNRRSKLDIFAVEMLDDAKIQQMDL 479

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL----YDSINKRRNIS 549
           FF                    RQ+       NI G    ++  L    +DSI      S
Sbjct: 480 FFSGG-----------------RQKRGM----NIKGIAKKTLRQLFQEGFDSITSILQAS 518

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN---------------------NII 588
            E    +LG   V A I +++ + + +  + +Q +                       I+
Sbjct: 519 EEDLAEALGKPGVAANIKKAIDERFSTPVDLSQIMGASQVFPHVRTKTATKIIAKYPKIM 578

Query: 589 AHNNDDWLSLIRVPLVG----DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
             N  +   +  V  VG    D  A A+  F    R+   ++   K V+      +K  S
Sbjct: 579 KMNAKELKKIKDVSGVGQETLDGFAAAMPGFKLFLRDNPQIKIASKSVT------KKPTS 632

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV---GDNPGSKLEKA 701
           ++++ K  VFTGT+ K++R  AQ  V  +G      L +  D +++   G     KL +A
Sbjct: 633 NKLQGKIFVFTGTMDKMRREDAQNLVEDMGGKAPGTLKKNVDFLVIGDKGGAGKKKLAQA 692

Query: 702 QQLGVKIMNEEQFLFLL 718
           ++    I++E  FL ++
Sbjct: 693 EKFDTPIISETDFLTMI 709


>gi|15078917|ref|NP_149668.1| 205R [Invertebrate iridescent virus 6]
 gi|82012211|sp|Q91FW5|VF205_IIV6 RecName: Full=Putative DNA ligase 205R
 gi|15042287|gb|AAK82067.1|AF303741_205 205R [Invertebrate iridescent virus 6]
          Length = 615

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 152/712 (21%), Positives = 281/712 (39%), Gaps = 159/712 (22%)

Query: 32  DDCYYQYSKPIILDSEYDALKRRCDAI-AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           D  Y+   K I+ D+EYD L  +  +      P +++++ P                   
Sbjct: 29  DHFYFNTEKEILTDNEYDILAEQLQSTNVGCSPLISKTDLP------------------- 69

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
             +   SL+K++N ++L  +I ++          S  + ++ K+DG    I  +  K + 
Sbjct: 70  --LWMGSLDKVYNDKELNLWIKKVA---------SDKYIIQCKLDGVSCLIINKDNK-LK 117

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
           A  RG+G  G D+S  I+       +    +P  I +R E+ I K  F   N +     +
Sbjct: 118 AYTRGNGKVGTDISHLIKYF-----IKDKCLPNNIALRCEIIIKKETF---NQKY----K 165

Query: 211 KPYANPRNAASGILRR---------LNPTDITRY--LNFFVHGLGKTSEIFAKGQYEMLQ 259
             ++NPR+  SG++ R         LN   +  Y  +NF V+   K        Q E+++
Sbjct: 166 HAFSNPRSFVSGVVNRKQENIVISELNDLCLIAYELINFPVNEYQKN----ILTQIEIIE 221

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           ++  + F   N    +N F    +  N  K +++   +++DGLV   +   ++   G   
Sbjct: 222 QLNFIQFV--NFKTISNEFLTQKALSNLFKEMKNNSLFEMDGLVILANTPYIRVTEG--- 276

Query: 320 RSPRWMISHKF-AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +P+  I+ K   +     ++  I+  +G+TG+ TP   + P  I G  ++  T  N +Y
Sbjct: 277 -NPKHSIAFKVRGDNVKEAKVTFIEWNVGKTGVFTPKVHIVPTEINGTTVSCFTGFNANY 335

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           +        + +G   I  G  +LV RAG+ IP+++ +    +      F          
Sbjct: 336 L--------IEKG---IGEGAIILVTRAGDAIPQIIGV----KQTGVLTF---------- 370

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
                   PK  +     R    +    + ++++ HFV                      
Sbjct: 371 --------PKDYEWKGDCRIVEKIESKERIIKQILHFVE--------------------- 401

Query: 499 DPAFSIRIP-ADIFTLQRRQQTSTTKIE--------NILGFGDVSVTNLYDSINKRRNIS 549
               S+ IP     T+ +      T IE        ++L FG    + +Y+SI K     
Sbjct: 402 ----SVDIPYIKEATINKLYNNGCTSIELFLKLTQKDLLLFGPKLSSTIYNSIQKSFEAP 457

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E+F+   G    G  I     K  L  Q +     N+    N D + L+ +  +G   A
Sbjct: 458 IEKFL--SGYNAFGDYIGEK--KILLLLQKYP----NLFELENLDAIDLVSIEGIGSKTA 509

Query: 610 QAIVEFYQNPR---NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK--IQRH 664
             I + + N +   N      L K V      H  +  + +E  K+  +GT     IQ  
Sbjct: 510 TQIKQHFINAKLIYNNIIQNKLFKGV-----LHTPSKQNTVELFKVCVSGTRDPLFIQEL 564

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIV--GDNPGSKLEKAQQLGVKIMNEEQF 714
           K +      G V+S  +++K  ++IV   +   +K++KA  +G+ I+  E F
Sbjct: 565 KNR------GFVLSDNITKKVKVLIVKNSNEETTKVKKANSVGITILTLEDF 610


>gi|297520938|ref|ZP_06939324.1| NAD-dependent DNA ligase LigB [Escherichia coli OP50]
          Length = 312

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 132/297 (44%), Gaps = 41/297 (13%)

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     +
Sbjct: 35  LWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-L 93

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+++ +     +  +M  +      N R   +G++ R + +D    L  FV       
Sbjct: 94  QGEIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGP 145

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGL 302
           ++ +    + L+++   GF +        T+   V   +E+  +R     + LP+  DG+
Sbjct: 146 QLMS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGV 195

Query: 303 VYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           V +   E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV
Sbjct: 196 VVRAAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 252

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417
            +    +    +            G V R    DI  GD++LV  AG+ IP++ D++
Sbjct: 253 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVV 297


>gi|32396678|gb|AAP49296.1| NAD-dependent DNA ligase [Meiothermus ruber]
          Length = 120

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 216 PRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274
           PRNAA+G LR+ +P     R L    +G+G+   +    Q E+L+K+  LGF V+   + 
Sbjct: 2   PRNAAAGSLRQKDPRISAKRGLRGLFYGVGRPESLGVGTQQELLEKLGQLGFSVDPHYQV 61

Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
                GI   Y  M + R +LP++ DG+  K++  SL  +LG  A++PR+ I++KF
Sbjct: 62  VRGVEGIEQGYQAMLAARKSLPFEADGVTVKLNNLSLWSELGYTAKTPRFAIAYKF 117


>gi|149198973|ref|ZP_01876014.1| NAD-dependent DNA ligase [Lentisphaera araneosa HTCC2155]
 gi|149137968|gb|EDM26380.1| NAD-dependent DNA ligase [Lentisphaera araneosa HTCC2155]
          Length = 647

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 161/388 (41%), Gaps = 66/388 (17%)

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD---DNSIFFTLEP 132
           +K+G E+  +  KV  ++P  SL KI       K    ++ + + K    D  I  T  P
Sbjct: 44  DKVGYEIEKN--KVELAVPMGSLNKI-------KTQAEVFDWSKSKSIPLDTEICVT--P 92

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGE 190
           K DG  + + +  G +  A  RGDG  G+DV        T+  +  L +P+     + GE
Sbjct: 93  KYDGLSLLVYFVDGIYKGAYTRGDGMFGQDVGEHF----TVNPLCDLRLPQDFTGYLIGE 148

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
             + +  F     E        + NPRN  +G+L R   +     + +  +G+       
Sbjct: 149 CIMDEAKFQTKYSEK-------FKNPRNMVAGLLSRKTLSRELADVCYVAYGVRSAQMAH 201

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYY--NEMKSIRSTLPYD------IDGL 302
            + Q E            N  +     +  +   Y   ++K       YD       DGL
Sbjct: 202 KQDQVEF----------CNRYINAQWKYKVLCPLYKLEDLKDAELQKVYDSETRFQCDGL 251

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKF---AEKQASTRLLDIDIQIGRTGILTPVARLE 359
           V ++++  L  Q+G+   S     +  +   ++    + + ++  QI + G   PV R+E
Sbjct: 252 VLEINDSDLFHQIGKETNSLNPGAARAWKPESDDSLPSIVKEVVWQISKNGAAKPVIRIE 311

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           P+++ G  I+N T  N  +I   + SG        I  G  V + R+G+VIPKV+ +   
Sbjct: 312 PIDLAGVTISNVTGINARFI---EDSG--------IAKGATVTIIRSGDVIPKVIGV--- 357

Query: 420 ERHPDA-QPFSFPSFCPICQSRVVRDLN 446
              P+A +    P  CP C+S +V + N
Sbjct: 358 ---PNAIENVDLPKQCPSCESELVWNEN 382


>gi|284008967|emb|CBA75857.1| NAD-dependent DNA ligase LigB [Arsenophonus nasoniae]
          Length = 547

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 148/355 (41%), Gaps = 62/355 (17%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYD---ALKRRCDAIAHAFPDLARSEDPNGPL 75
           +E+ ++  E+   D+ YY   + ++ D  YD   AL +         PD  ++   + P+
Sbjct: 48  REIKAINSELKRWDEAYYINGQSLVNDETYDQIFALWKHWSNCLRLPPD--KTNTLSLPI 105

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
                       + TH +    L+KI   +++ ++I   +  W           L+PK+D
Sbjct: 106 KG----------RKTHPVIHTGLKKI-TADEIARWIAGRHEVW-----------LQPKVD 143

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G   T+ Y+KGK      RG+G  G D +     +P IP+ +  +  ++I ++GE++  +
Sbjct: 144 GVAATLVYKKGKLAALISRGNGIEGIDWTPKADFLPAIPKTIPNHATQLI-LQGELFWYQ 202

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLN-----PTDITRYLNFFVHGLGKTSEIF 250
                 + + IA G    AN RN  +G L R N        I  ++  +  G       F
Sbjct: 203 TG----HQQAIAGG----ANARNKVAGWLMRKNLLVQQEEQIGIFIWSWPDGPSNMQTQF 254

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS-----YYNEMKSIRSTLPYDIDGLVYK 305
           A+        +   GFP+        T    ++     YYN+       +P+  DG+V K
Sbjct: 255 AQ--------LERWGFPLTKRYSHLVTSVDQITQWQRYYYNQ------PMPFATDGIVLK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
              ++L +    +A    W ++ K+  +    ++  +   IGRTG + P+  + P
Sbjct: 301 QLPYTLGQYW--QAGINNWSVAWKYPTQNRVAQVAAVKFNIGRTGKINPIIGILP 353


>gi|32396672|gb|AAP49293.1| NAD-dependent DNA ligase [Geobacillus thermodenitrificans]
 gi|32396682|gb|AAP49297.1| NAD-dependent DNA ligase [Bacillus coagulans]
          Length = 107

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 8/113 (7%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD L +   AI   +P+L  S+ P     +IGG    +  KVTH +P +SL   ++ 
Sbjct: 1   DAEYDRLMQELMAIEEQYPELKTSDSPT---QRIGGPPLEAFRKVTHVVPMMSLANAFDE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
            DLR F  R+     +++     +  E KIDG  +++RYE G FV  A RGDG
Sbjct: 58  GDLRDFDRRV-----RQEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDG 105


>gi|32307199|gb|AAP79092.1| NAD-dependent DNA ligase [Bacillus catenulatus]
          Length = 107

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 8/113 (7%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD L +   AI   +P+L  S+ P     +IGG    +  KVTH +P +SL   +  
Sbjct: 1   DAEYDLLMQELIAIEEQYPELKTSDSPT---QRIGGPPLEAFRKVTHRVPMMSLANAFGE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
            DLR F  R+     +++     +  E KIDG  +++RYE G FV  A RGDG
Sbjct: 58  GDLRDFDRRV-----RQEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDG 105


>gi|32396667|gb|AAP49291.1| NAD-dependent DNA ligase [Bacillus sp. IMG-2]
          Length = 107

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 8/113 (7%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD   R    +   +P+L   + P+ P  ++GG +  +  KV H +P LSL   +N 
Sbjct: 1   DAEYDRFMRELIELEEKYPEL---KTPDSPSQRVGGAVLDAFRKVAHRVPMLSLANAFNE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
           +DLR F  R+     ++    + + +E KIDG  +++RYE G FV  + RGDG
Sbjct: 58  QDLRDFDRRV-----RQAVGDVEYVVELKIDGLAVSLRYENGLFVQGSTRGDG 105


>gi|167950972|ref|ZP_02538046.1| DNA ligase, NAD-dependent [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 256

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 100/249 (40%), Gaps = 78/249 (31%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF---------------------A 581
            + +  SL RF+F+LGIR VG   A +LA+++   Q                       A
Sbjct: 4   QRSKQTSLARFLFALGIREVGDATAAALARHFRDLQPLMTAERDDFIHDSGIKGVGASTA 63

Query: 582 QEINNIIAH---------NNDDWLS-------------------------------LIR- 600
           Q I + +A             DWL+                               L+R 
Sbjct: 64  QAICDALAGPLPAEPLAGGLADWLAGMNVRGLNRAVAERLSERFGSLEALRQATPELLRR 123

Query: 601 -----VPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIEN 649
                V  VG I+A  IV F++ P N   +E L       +E +P     E    + +  
Sbjct: 124 EQRSLVEGVGPIVADHIVTFFRQPHNQEVIEKLRQVGVNWEEEAPP----ETPAEAPLLG 179

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K +V TGTL +  R   +  +  LG  V+  +S+ TD +I G   GSKL KAQQLGV+I+
Sbjct: 180 KTVVLTGTLSR-PRSAIKAELQALGGQVTGSVSKNTDYLIAGAEAGSKLSKAQQLGVEIL 238

Query: 710 NEEQFLFLL 718
           +E     LL
Sbjct: 239 DEAGLARLL 247


>gi|32482045|gb|AAP49289.1| NAD-dependent DNA ligase [Bacillus sp. IMG-1]
          Length = 107

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 8/113 (7%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD L +   AI   +P+L  S+ P     +IGG    +  KV H +P +SL   +  
Sbjct: 1   DAEYDRLMQELIAIEEQYPELKTSDSPT---QRIGGPPLEAFRKVAHPVPMMSLANAFGE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
            DLR F  R+     +++     +  E KIDG  +++RYE G FV  A RGDG
Sbjct: 58  GDLRDFDRRV-----RQEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDG 105


>gi|291545736|emb|CBL18844.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Ruminococcus sp. SR1/5]
          Length = 225

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 32/242 (13%)

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NI+GL +  L+ F       F I    DIF + R +     +I  + GFG  S  NL +
Sbjct: 1   MNIDGLSEATLEKFIAR---GF-IHDFGDIFEISRYKD----EIVEMEGFGQKSYDNLME 52

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ + +  +L R I+SLGI ++G   A+ + ++      F  +++  I H + + +S   
Sbjct: 53  SLERAKETTLPRVIYSLGIANIGLANAKVICRH------FDNDLDR-IRHASLEEVS--D 103

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALL-----KEVSPSIGRHEKNVSSEIENKKLVFT 655
           +  +G +IA  +V ++++  N   ++ L+     +E SP   + E+      E    V T
Sbjct: 104 IDTIGPVIAGNLVAYFRDEDNDRRLDHLMSFLHIQEDSP---KQEQI----FEGMNFVIT 156

Query: 656 GTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEE 712
           G+L     R +A+E +  LG  V+  +++KT+ +I  D  +  SK +KA++LG+ I++EE
Sbjct: 157 GSLVHFGNRSEAKELIESLGGKVTGSVTKKTNYLINNDIQSNSSKNKKARELGIPILSEE 216

Query: 713 QF 714
            F
Sbjct: 217 DF 218


>gi|32396687|gb|AAP49299.1| NAD-dependent DNA ligase [Bacillus circulans]
          Length = 108

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 7/113 (6%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD   +   A+   +P+    + P+    ++GG+   +  KV H IP LSL   ++ 
Sbjct: 1   DAEYDLFMQELIALEEQYPEFKTKDSPS---QRVGGQPLDAFQKVEHRIPMLSLANAFHE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
            DLR F  R+    +++  + + +  E KIDG  +++RYE G FV  A RGDG
Sbjct: 58  GDLRDFDRRV----RQEVGDDVAYVCELKIDGLAVSVRYENGYFVQGATRGDG 106


>gi|221487771|gb|EEE26003.1| brct domain-containing protein, putative [Toxoplasma gondii GT1]
          Length = 1094

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 11/117 (9%)

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V+KV+E S+Q  LG RA  PRW  + KF +  A +++ D    +G+ G +  VA LE
Sbjct: 412 DGVVFKVNEVSVQLALGNRATGPRWAFARKFPQPFALSKIRDFVFSVGQFGSVHVVAALE 471

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           PV  G   +  A++   + +             R + VGD V V  +G   P +V I
Sbjct: 472 PVRFGNLTVCRASVGTLETLS-----------RRQLAVGDEVYVHLSGHTTPLIVGI 517


>gi|237830775|ref|XP_002364685.1| NAD-dependent DNA ligase OB-fold domain containing protein
           [Toxoplasma gondii ME49]
 gi|211962349|gb|EEA97544.1| NAD-dependent DNA ligase OB-fold domain containing protein
           [Toxoplasma gondii ME49]
 gi|221507565|gb|EEE33169.1| DNA ligase, NAD-dependent, putative [Toxoplasma gondii VEG]
          Length = 1094

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 11/117 (9%)

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V+KV+E S+Q  LG RA  PRW  + KF +  A +++ D    +G+ G +  VA LE
Sbjct: 412 DGVVFKVNEVSVQLALGNRATGPRWAFARKFPQPFALSKIRDFVFSVGQFGSVHVVAALE 471

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           PV  G   +  A++   + +             R + VGD V V  +G   P +V I
Sbjct: 472 PVRFGNLTVCRASVGTLETLS-----------RRQLAVGDEVYVHLSGHTTPLIVGI 517


>gi|300939287|ref|ZP_07153961.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli MS 21-1]
 gi|300455794|gb|EFK19287.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli MS 21-1]
          Length = 209

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 23/185 (12%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+ +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 25  AWSLARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DA 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 84  MMPPLNG----------AVMHPVAHTGVSKMADKNALSLWMRERSDLW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +PR +S  +     ++GE
Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTHKVRLISAVPRTVSGPLANST-LQGE 181

Query: 191 VYISK 195
           +++ +
Sbjct: 182 IFLKR 186


>gi|148381134|ref|YP_001255675.1| BRCT domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933573|ref|YP_001385509.1| BRCT domain-containing protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153936307|ref|YP_001388915.1| BRCT domain-containing protein [Clostridium botulinum A str. Hall]
 gi|148290618|emb|CAL84747.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929617|gb|ABS35117.1| BRCT domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932221|gb|ABS37720.1| BRCT domain protein [Clostridium botulinum A str. Hall]
          Length = 242

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 27/262 (10%)

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           + R+K  V     NI+ L  + ++  FK+      +    DIF L++ +      +  I 
Sbjct: 7   INRIKSMVGEKGINIKELNDETINILFKNG----LLNNAYDIFLLKKEE------LYKID 56

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           GF    V  L  SINK +N S E+FI++  I  V  + A  +A  +L++ +   +INN  
Sbjct: 57  GFTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDLVIDINN-- 114

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             N+ D L  I      D +++ IVE  +  RN   +  L   V+P I   EKN  + I+
Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--TNIK 161

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K   +  +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 162 RYKFSITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729
           +++E Q + +L++     +I +
Sbjct: 221 LISERQLVDILKEIKENNKIKN 242


>gi|168179165|ref|ZP_02613829.1| BRCT domain protein [Clostridium botulinum NCTC 2916]
 gi|226950614|ref|YP_002805705.1| BRCT domain-containing protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670000|gb|EDT81976.1| BRCT domain protein [Clostridium botulinum NCTC 2916]
 gi|226842284|gb|ACO84950.1| BRCT domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 242

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 121/253 (47%), Gaps = 27/253 (10%)

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           + R+K  V     NI+ L  + ++  FK+      +    DIF L++ +      +  I 
Sbjct: 7   INRIKIMVGEKGINIKELNDETINILFKNG----LLNNAYDIFLLKKEE------LYKID 56

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           GF    V  L  SINK +N S E+FI++  I  V  + A  +A  +L++ +   +INN  
Sbjct: 57  GFTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDLVIDINN-- 114

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             N+ D L  I      D +++ IVE  +  RN   +  L   V+P I   EKN  + I+
Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--TNIK 161

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K   +  +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 162 RYKFAITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQ 720
           +++E Q + +L++
Sbjct: 221 LISERQLVDILKE 233


>gi|289679601|ref|ZP_06500491.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           FF5]
          Length = 261

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 24/177 (13%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  +            + A  + DWL + +   + +
Sbjct: 91  STTLEGLIDKLHIPSVGPGAAQKLADRF----------GTLEAIISADWLDMRQA--LSE 138

Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+ +  N     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 139 KQAKSVRDFFDDSANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 194

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L
Sbjct: 195 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALL 251



 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 10/83 (12%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +          +P VG  +
Sbjct: 1   TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 50

Query: 609 AQAIVEFYQNPRNICAVEALLKE 631
           A  I  F+++  N   ++ALL E
Sbjct: 51  AYEIHSFFEDEHNRSVIDALLGE 73


>gi|207723347|ref|YP_002253746.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial
           sequencecentral part) protein [Ralstonia solanacearum
           MolK2]
 gi|206588546|emb|CAQ35509.1| probable dna ligase (polydeoxyribonucleotide synthase [nad+])
           (partial sequencecentral part) protein [Ralstonia
           solanacearum MolK2]
          Length = 228

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 47/73 (64%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +V TGTL  + R  A+  +   GA VS  +S+KTD ++ G+  GSKL KA++LGV
Sbjct: 149 LSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSKKTDYVVAGEEAGSKLAKAEELGV 208

Query: 707 KIMNEEQFLFLLQ 719
           K+++E   L LLQ
Sbjct: 209 KVLDEAGMLALLQ 221


>gi|213859393|ref|ZP_03385097.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 109

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 51/78 (65%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
           + + S    K +V TG+L ++ R  A+  +  LGA V+  +S+KTD++I G+  GSKL K
Sbjct: 30  QEIDSPFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAK 89

Query: 701 AQQLGVKIMNEEQFLFLL 718
           AQ+LG+ +++E + + LL
Sbjct: 90  AQELGITVIDEAEMIRLL 107


>gi|330955486|gb|EGH55746.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae Cit 7]
          Length = 296

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 24/177 (13%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +LE  I  L I  VG   A+ LA  +            + A  + DWL + +   + +
Sbjct: 127 STTLEGMIDKLHIPSVGPGAAQKLADRF----------GTLEAIISADWLDMRQA--LPE 174

Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658
             A+++ +F+ +  N     A+EA LK+     G H ++    +E   L     V TG+L
Sbjct: 175 KQAKSVRDFFDDSANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 230

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L
Sbjct: 231 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALL 287



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 16/125 (12%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           PAD++ L+  Q      I ++ GF ++S   L  +I   R  +L RFI++LGI  VG E 
Sbjct: 1   PADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVGEET 54

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A+ LA+   S +   Q +  ++ +          +P VG  +A  I  F+++  N   ++
Sbjct: 55  AKVLARSLASLERVQQALPEVLTY----------LPDVGLEVAYEIHSFFEDEHNRSVID 104

Query: 627 ALLKE 631
           ALL E
Sbjct: 105 ALLGE 109


>gi|237796641|ref|YP_002864193.1| BRCT domain protein [Clostridium botulinum Ba4 str. 657]
 gi|229263554|gb|ACQ54587.1| BRCT domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 242

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 121/253 (47%), Gaps = 27/253 (10%)

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           + R+K+ V     NI+ L  + ++  FK+      +    DIF L++ +      +  I 
Sbjct: 7   INRIKNMVGEKGINIKELNDETINILFKNG----LLNNAYDIFLLKKEE------LYKID 56

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           G     V  L  SINK +N S E+FI++  I  V  + A  +A  +L++ +   +INN  
Sbjct: 57  GLTKEYVDKLIKSINKTKNCSFEKFIYACSIPKVKEKEAIVIAHTFLNFTDLVIDINN-- 114

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             N+ D L  I      D +++ IVE  +  RN   +  L   V+P I   EKN  + I+
Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--ANIK 161

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K   +  +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 162 RYKFCITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQ 720
           +++E Q + +L++
Sbjct: 221 LISERQLVDILKE 233


>gi|255019090|ref|ZP_05291216.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL F2-515]
          Length = 99

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P  P  ++GGE+     KV H  P LSL   +N EDL  F  RI    + K  + I +  
Sbjct: 17  PESPSKRVGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRI----RDKVGDDIAYMC 72

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDG 157
           E KIDG  ++++YE GK+   A RGDG
Sbjct: 73  ELKIDGLAVSLQYENGKYKQGATRGDG 99


>gi|322652149|gb|EFY48511.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
          Length = 100

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 51/78 (65%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
           + + S    K +V TG+L ++ R  A+  +  +GA V+  +S+KTD++I G+  GSKL K
Sbjct: 21  QEIDSPFAGKTVVLTGSLSQMSRDDAKARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAK 80

Query: 701 AQQLGVKIMNEEQFLFLL 718
           AQ+LG+ +++E + + LL
Sbjct: 81  AQELGITVIDEAEMIRLL 98


>gi|170760368|ref|YP_001788506.1| BRCT domain-containing protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407357|gb|ACA55768.1| BRCT domain protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 242

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 121/253 (47%), Gaps = 27/253 (10%)

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           + R+K+ V     NI+ L  + ++  FK+      +    DIF L++ +      +  I 
Sbjct: 7   INRIKNMVGEKGINIKELNDKTINILFKNG----LLNNAYDIFLLKKEE------LYKID 56

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           G     V  L  SINK +N S E+FI++  I  V  + A  +A  +L++ +   +INN  
Sbjct: 57  GLTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDLVIDINN-- 114

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             N+ D L  I      D +++ IVE  +  RN   +  L   V+P I   EKN  + I+
Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--ANIK 161

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K   +  +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 162 RYKFCITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQ 720
           +++E Q + +L++
Sbjct: 221 LISERQLVDILKE 233


>gi|153938097|ref|YP_001392537.1| BRCT domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|152933993|gb|ABS39491.1| BRCT domain protein [Clostridium botulinum F str. Langeland]
 gi|295320523|gb|ADG00901.1| BRCT domain protein [Clostridium botulinum F str. 230613]
          Length = 242

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 120/253 (47%), Gaps = 27/253 (10%)

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           + R+K  V     NI+ L  + ++  FK+      +    DIF L++ +      +  I 
Sbjct: 7   INRIKSMVGEKGINIKELNDETINILFKNG----LLNNAYDIFLLKKEE------LYKID 56

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           GF    V  L  SINK +N S E+FI++  I  V  + A  +A  +L+  +   +INN  
Sbjct: 57  GFTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNLTDLVIDINN-- 114

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             N+ D L  I      D +++ IVE  +  RN   +  L   V+P I   EKN  + I+
Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--ANIK 161

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K   +  +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 162 RYKFSITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQ 720
           +++E Q + +L++
Sbjct: 221 LISERQLVDILKE 233


>gi|187776894|ref|ZP_02993367.1| hypothetical protein CLOSPO_00433 [Clostridium sporogenes ATCC
           15579]
 gi|187775553|gb|EDU39355.1| hypothetical protein CLOSPO_00433 [Clostridium sporogenes ATCC
           15579]
          Length = 242

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 124/253 (49%), Gaps = 27/253 (10%)

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           + ++K+ V     NI+ L  + ++  FK+    F   +  DIF L++ +      +  I 
Sbjct: 7   INKIKNMVGEKGLNIKKLNDETINILFKN---GFLNNV-YDIFLLKKEE------LYKIN 56

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           GF    V  L  SI+K +N S E+FI++  I  V  + A ++A  +L++ +   +INN  
Sbjct: 57  GFTKEHVDELIKSIDKAKNCSFEKFIYASSIPKVKEKEAMAIAHTFLNFTDLVIDINN-- 114

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             N+ D L  I      D I++ +VE  +  RN   +  L   V+P+    EKN  + I+
Sbjct: 115 --NDCDRLRRI------DGISEELVESIK--RNRVFLVNLFMYVNPT-SIDEKN--ANIK 161

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K   +  +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 162 RYKFCITGVLNKDTNY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQ 720
           +++E Q + +L++
Sbjct: 221 LISERQLVDILKE 233


>gi|149925065|ref|ZP_01913379.1| NAD-dependent DNA ligase LigA [Plesiocystis pacifica SIR-1]
 gi|149814058|gb|EDM73688.1| NAD-dependent DNA ligase LigA [Plesiocystis pacifica SIR-1]
          Length = 669

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 48/73 (65%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
           ++  K +V TG L KI+R +A+  +  LGA VS  +S+ TD++ VG+ PGSKL KA +LG
Sbjct: 246 DVNGKTVVVTGKLAKIKRAEAEARLNALGAKVSGSVSKSTDLLFVGEKPGSKLAKANKLG 305

Query: 706 VKIMNEEQFLFLL 718
           + + +E   + L+
Sbjct: 306 IPVHDEAALMQLV 318



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 49/79 (62%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           E    + ++ KK+  TG L  + R +A+ ++   GA  ++ +S  TD++I+G + GSK  
Sbjct: 334 ETKAVAALKGKKIAVTGKLSLMTRAEAKAHILAAGAKPTSSVSGATDLLILGKDAGSKQR 393

Query: 700 KAQQLGVKIMNEEQFLFLL 718
            A QLGV+ +NE+QFL ++
Sbjct: 394 LAIQLGVETVNEDQFLRMI 412


>gi|170755519|ref|YP_001782825.1| BRCT domain-containing protein [Clostridium botulinum B1 str. Okra]
 gi|169120731|gb|ACA44567.1| BRCT domain protein [Clostridium botulinum B1 str. Okra]
          Length = 242

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 27/253 (10%)

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           + R+K+ V     NI+ L  + ++  F++    F +    DIF L++ +      +  I 
Sbjct: 7   INRIKNMVGEKGINIKELNDETINILFEN---GF-LNNAYDIFLLKKEE------LYKID 56

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           GF    V  L  SINK +N + E+FI++  I  V  + A  +A  +L++ +   +INN  
Sbjct: 57  GFTKEYVDELIKSINKTKNCNFEKFIYACSIPKVTEKEAIVIAHTFLNFTDLVIDINN-- 114

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             N+ D L  I      D +++ IVE  +  RN   +  L   V+P I   EKN  + I+
Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--ANIK 161

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K   +  +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 162 RYKFSITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQ 720
           +++E Q + +L++
Sbjct: 221 LISERQLVDILKE 233


>gi|126660216|ref|ZP_01731333.1| DNA ligase [Cyanothece sp. CCY0110]
 gi|126618518|gb|EAZ89270.1| DNA ligase [Cyanothece sp. CCY0110]
          Length = 524

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           KKLV  G+L  + R  A+  V Q G  +++  S KTD ++VG NPG KL+KAQ+LG+  +
Sbjct: 445 KKLVVVGSLDSMNRETAKSLVQQAGGTLTSSPSSKTDYVVVGKNPGDKLKKAQKLGISQL 504

Query: 710 NEEQFLFLL 718
           +E QFL  L
Sbjct: 505 SENQFLEAL 513


>gi|19173693|ref|NP_597496.1| DNA REPLICATION FACTOR C SUBUNIT [Encephalitozoon cuniculi GB-M1]
 gi|19170899|emb|CAD26673.1| DNA REPLICATION FACTOR C SUBUNIT [Encephalitozoon cuniculi GB-M1]
          Length = 568

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 2/80 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           ++ K  VFTG + KI R  A+  V  LG   +A+ S KT  ++ GDNPG SK++KA++LG
Sbjct: 8   LKGKVFVFTGDM-KISRDDAKTKVMVLGGRCTAVPSSKTTFLVAGDNPGPSKMQKAKELG 66

Query: 706 VKIMNEEQFLFLLQQYNTTL 725
           +K+++EE+F  L++  +  L
Sbjct: 67  IKVLDEEEFDSLIKDTSKAL 86


>gi|325119805|emb|CBZ55358.1| putative NAD-dependent DNA ligase OB-fold domain containing protein
            [Neospora caninum Liverpool]
          Length = 1981

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 11/117 (9%)

Query: 300  DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
            DG+V+KV     Q  LG RA  PRW  + KF +  A +R+ D    +G+ G +  VA LE
Sbjct: 1068 DGVVFKVLSLPAQLLLGNRATGPRWAFARKFPQPFALSRIRDFAFSVGQFGYVHVVAALE 1127

Query: 360  PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            PV +G   I+ A++   + +             R + VGD V V  +G   P +V I
Sbjct: 1128 PVRLGNLTISRASVGTIETL-----------ARRGLAVGDEVYVHLSGHTTPLIVGI 1173


>gi|291298903|ref|YP_003510181.1| BRCT domain-containing protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290568123|gb|ADD41088.1| BRCT domain protein [Stackebrandtia nassauensis DSM 44728]
          Length = 1024

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
           EIE K +V TG+   + R +A + +++LGA+V   +S KTD++  GD  G K +KA  LG
Sbjct: 20  EIEGKTIVLTGSFLAMPRSEAGQRLSELGAIVKGTVSSKTDLVFAGDKAGGKADKALALG 79

Query: 706 VKIMNEEQFLFLLQQYNTT 724
           V +  E   + +L     T
Sbjct: 80  VPVHGEAALMAVLSGEAAT 98


>gi|168183502|ref|ZP_02618166.1| BRCT domain protein [Clostridium botulinum Bf]
 gi|182673380|gb|EDT85341.1| BRCT domain protein [Clostridium botulinum Bf]
          Length = 242

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 120/253 (47%), Gaps = 27/253 (10%)

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           + R+K+ V     NI+ L  + ++  FK+      +    DIF L++ +      +  I 
Sbjct: 7   INRIKNMVGEKGINIKELNDETINILFKNG----LLNNAYDIFLLKKEE------LYKID 56

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           G     V  L  SINK +N S E+FI++  I  V  + A  +A  + ++ +   +INN  
Sbjct: 57  GLTKEYVDKLIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFFNFTDLVIDINN-- 114

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             N+ D L  I      D +++ IVE  +  RN   +  L   V+P I   EKN  + I+
Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--ANIK 161

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K   +  +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 162 RYKFCITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQ 720
           +++E Q + +L++
Sbjct: 221 LISERQLVDILKE 233


>gi|330903436|gb|EGH34008.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 130

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 12/115 (10%)

Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660
            QA+ +F+ +  N     A+EA LK+     G H ++    +E   L     V TG+L++
Sbjct: 9   GQAVCDFFDDSANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSLER 64

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L
Sbjct: 65  MSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALL 119


>gi|332084490|gb|EGI89685.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           dysenteriae 155-74]
 gi|332084829|gb|EGI90012.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           boydii 5216-82]
          Length = 195

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 23/185 (12%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R + 
Sbjct: 24  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 83  MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMREHSDLW-----------V 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++GE
Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180

Query: 191 VYISK 195
           +++ +
Sbjct: 181 IFLKR 185


>gi|126174866|ref|YP_001051015.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
 gi|125998071|gb|ABN62146.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
          Length = 145

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 8/137 (5%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  ++
Sbjct: 12  EDVTPENASQVMQALSQPLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P     ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 72  SPT---QRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRV-----TDKVGEVSFC 123

Query: 130 LEPKIDGTMITIRYEKG 146
            EPK+DG  ++I Y  G
Sbjct: 124 CEPKLDGLAVSILYRNG 140


>gi|213620585|ref|ZP_03373368.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 82

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 48/73 (65%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
           + + S    K +V TG+L ++ R  A+  +  LGA V+  +S+KTD++I G+  GSKL K
Sbjct: 9   QEIDSPFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAK 68

Query: 701 AQQLGVKIMNEEQ 713
           AQ+LG+ +++E +
Sbjct: 69  AQELGITVIDEAE 81


>gi|16329814|ref|NP_440542.1| DNA ligase [Synechocystis sp. PCC 6803]
 gi|1652299|dbj|BAA17222.1| DNA ligase [Synechocystis sp. PCC 6803]
          Length = 562

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 46/69 (66%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           KK+V  GTL  + R +A+  +  +GA  +   S KTD I+VG  PG+KL+KAQ+LG+  +
Sbjct: 492 KKVVILGTLNAMNREEAKTRLQNVGAECTGTPSGKTDYIVVGKAPGAKLKKAQKLGIAQL 551

Query: 710 NEEQFLFLL 718
           +E QFL LL
Sbjct: 552 SEAQFLELL 560


>gi|166366736|ref|YP_001659009.1| hypothetical protein MAE_39950 [Microcystis aeruginosa NIES-843]
 gi|166089109|dbj|BAG03817.1| unknown protein [Microcystis aeruginosa NIES-843]
          Length = 654

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 631 EVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           EV P+   +   +++  + +  K +V  GT  KI R KA+  +  +G  V++  S  TD 
Sbjct: 562 EVQPAAEIVQTSQESAENTLRGKSVVILGTFSKISREKAKSLIINVGGTVTSSPSANTDY 621

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           I++G  PG KL+KAQ+LG+K ++E QFL +++
Sbjct: 622 ILLGKAPGEKLKKAQKLGIKTLSEAQFLQMVE 653


>gi|213024616|ref|ZP_03339063.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 130

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 5/109 (4%)

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLV 653
           L +VP VG ++A  +  F+    N   +  LL E     +P +  + + + S    K +V
Sbjct: 23  LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INAQEIDSPFAGKTVV 81

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
            TG+L ++ R  A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ
Sbjct: 82  LTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQ 130


>gi|323193166|gb|EFZ78384.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
          Length = 180

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 21/160 (13%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A +E++ L+Q+++  +D Y++     + DS YD L  R             S   + PL
Sbjct: 29  RAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTPVSPPL 88

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           N              H +    + K+ + + + +++      W           ++PK+D
Sbjct: 89  NG----------TTRHPVAHTGVRKLADRQAVEQWMRGRSELW-----------VQPKVD 127

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
           G  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+
Sbjct: 128 GVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQ 167


>gi|291562521|emb|CBL41337.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [butyrate-producing bacterium SS3/4]
          Length = 169

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 30/171 (17%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87
            YYQ S+ I+ + EYD L          + +L + E   G      P  K+G E+   L 
Sbjct: 21  AYYQESREIMSNFEYDRL----------YDELLKLEQETGTVFAGSPTQKVGYEVLSELP 70

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K  H  P LSL K  ++++LR+++                  L  K+DG  + + YE G 
Sbjct: 71  KERHERPMLSLNKTKSVDELREWL------------GGQTGLLSWKMDGLTVVLTYEDGV 118

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
              A  RG+G  GE +++  R    IP  +      I+  RGE  IS +DF
Sbjct: 119 LAKAVTRGNGEIGEVITSNARTFINIPTTIPYKGQLIL--RGEAVISYSDF 167


>gi|146229|gb|AAB88710.1| ORF; putative [Escherichia coli]
          Length = 218

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 31/221 (14%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R + 
Sbjct: 25  AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              PLN            V H +    + K+ +   L  ++      W           +
Sbjct: 84  MMPPLNG----------AVMHPVAHTGVRKMVDKNALSLWMRERSDLW-----------V 122

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++GE
Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD 231
           +++ +     +  +M  +      N R   +G++ R + +D
Sbjct: 182 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSD 214


>gi|67922509|ref|ZP_00516018.1| BRCT [Crocosphaera watsonii WH 8501]
 gi|67855680|gb|EAM50930.1| BRCT [Crocosphaera watsonii WH 8501]
          Length = 490

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 58/92 (63%), Gaps = 2/92 (2%)

Query: 629 LKEVSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           +K  S  +   ++ V SE+  ++KKLV  G+L  + R KA+  V Q+G  +++  S KT+
Sbjct: 390 VKSESAEVEESKEQVKSELVLKSKKLVIVGSLDSMNREKAKSLVQQVGGNLTSSPSSKTN 449

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            ++VG NPG KL+KA++ G+  ++E QFL  L
Sbjct: 450 YVVVGKNPGDKLKKAKKFGIAQLSETQFLEAL 481


>gi|159029660|emb|CAO87738.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 636

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 631 EVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           EV P+   +   +++  + +  K +V  GT  KI R +A+  +  +G  V+   S  TD 
Sbjct: 544 EVQPAAKIVQTSQESAENTLRGKTVVILGTFSKISREQAKSLIINVGGTVTGSPSANTDY 603

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           I++G  PG KL+KAQ+LG+K ++E QFL +++
Sbjct: 604 ILLGKAPGEKLKKAQKLGIKTLSEAQFLQMVE 635


>gi|153829889|ref|ZP_01982556.1| DNA ligase [Vibrio cholerae 623-39]
 gi|148874632|gb|EDL72767.1| DNA ligase [Vibrio cholerae 623-39]
          Length = 103

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 620 RNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+  +  LGA V
Sbjct: 2   RNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQALGAKV 61

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 62  TGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 103


>gi|242011918|ref|XP_002426690.1| Replication factor C subunit, putative [Pediculus humanus corporis]
 gi|212510861|gb|EEB13952.1| Replication factor C subunit, putative [Pediculus humanus corporis]
          Length = 842

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLE 699
           K  S+ ++N   V TG L  +++ KA E + + G  V+  +S+KTD I+VG+ PG SKL 
Sbjct: 118 KGTSNCLQNLTFVITGILDSLEKKKAVELIQKYGGRVTTQVSKKTDFIVVGEEPGESKLS 177

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           KA++   K +NE++ L L+ +
Sbjct: 178 KAEKFCTKKINEDELLALITE 198


>gi|172038660|ref|YP_001805161.1| hypothetical protein cce_3747 [Cyanothece sp. ATCC 51142]
 gi|171700114|gb|ACB53095.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 534

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E KKLV  G+L  + R  A+  V Q G  +++  S +T  ++VG NPG KL+KAQ+LG+
Sbjct: 452 LEGKKLVVVGSLNSMNREIAKSLVQQAGGTLTSSPSSRTHYVVVGKNPGDKLKKAQKLGI 511

Query: 707 KIMNEEQFLFLL 718
             ++E+QFL  L
Sbjct: 512 AQLSEDQFLEAL 523


>gi|37926542|pdb|1L7B|A Chain A, Solution Nmr Structure Of Brct Domain Of T. Thermophilus:
           Northeast Structural Genomics Consortium Target Wr64tt
          Length = 92

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            V TG L +  R + +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  + E
Sbjct: 13  FVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTE 71

Query: 712 EQFLFLLQ 719
           E+   LL+
Sbjct: 72  EELYRLLE 79


>gi|18376023|emb|CAB91757.2| related to replication factor C protein [Neurospora crassa]
          Length = 1092

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  K  VFTG L+ I R +AQ  V + G  V+   S KTD +++GD+ G SKL K ++ G
Sbjct: 344 LAGKTFVFTGLLKTIAREEAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 403

Query: 706 VKIMNEEQFLFLLQ 719
           +K ++EE   +L++
Sbjct: 404 IKTIDEEGLFYLIR 417


>gi|164424568|ref|XP_963539.2| hypothetical protein NCU06767 [Neurospora crassa OR74A]
 gi|157070569|gb|EAA34303.2| hypothetical protein NCU06767 [Neurospora crassa OR74A]
          Length = 1086

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  K  VFTG L+ I R +AQ  V + G  V+   S KTD +++GD+ G SKL K ++ G
Sbjct: 338 LAGKTFVFTGLLKTIAREEAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 397

Query: 706 VKIMNEEQFLFLLQ 719
           +K ++EE   +L++
Sbjct: 398 IKTIDEEGLFYLIR 411


>gi|303389467|ref|XP_003072966.1| DNA replication factor C subunit [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302109|gb|ADM11606.1| DNA replication factor C subunit [Encephalitozoon intestinalis ATCC
           50506]
          Length = 566

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLG 705
           ++ K  VFTG + K+ R  A+  V  LG   +   S KT  ++VGDNPG  K++KA +L 
Sbjct: 8   LKGKVFVFTGDM-KMSRDDAKARVMVLGGRCTTAPSSKTSFLVVGDNPGPMKIQKANELN 66

Query: 706 VKIMNEEQFLFLLQ 719
           +KI+NEE+F+ L++
Sbjct: 67  IKILNEEEFVKLVE 80


>gi|167390687|ref|XP_001739454.1| replication factor C large subunit [Entamoeba dispar SAW760]
 gi|165896833|gb|EDR24155.1| replication factor C large subunit, putative [Entamoeba dispar
           SAW760]
          Length = 576

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
           +E E K  V TG   ++ R + +EY+T  G  V+  +S KT ++I G+ PG SK+EKA++
Sbjct: 160 NEFEKKNFVLTGVYDELDRDEMKEYITNFGGNVATSISGKTGVLIAGEEPGPSKIEKAKE 219

Query: 704 LGVKIMNEE 712
            G+ I NE+
Sbjct: 220 KGIAIWNED 228


>gi|1488250|gb|AAB12366.1| DNA ligase [Dichelobacter nodosus]
          Length = 139

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

Query: 608 IAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +A  I  F+ +  N   + A++   V  S    +K + + +  K +V TGTL  + R +A
Sbjct: 1   VAADIEHFFADEDNRAVIAAIVPAGVHWSTELPKKIIDAPLLGKTVVITGTLPSLSRAEA 60

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           Q+ +  LGA V++ +SR+TD +++G + GSKL +AQ   V+++
Sbjct: 61  QKRLETLGAKVTSQVSRQTDFLLLGADAGSKLARAQAFSVRLL 103


>gi|289614472|emb|CBI58756.1| unnamed protein product [Sordaria macrospora]
          Length = 1075

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  K  VFTG L+ I R  AQ  V + G  V+   S KTD +++GD+ G SKL K ++ G
Sbjct: 335 LAGKTFVFTGLLKTIAREDAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 394

Query: 706 VKIMNEEQFLFLLQ 719
           +K ++EE   +L++
Sbjct: 395 IKTIDEEGLFYLIR 408


>gi|330872403|gb|EGH06552.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 379

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 138/357 (38%), Gaps = 59/357 (16%)

Query: 215 NPRNAASGILRR--LNPTD---ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
           N R+  +G+L R  ++P     I  ++  + +G G  ++  A  Q    +       P+ 
Sbjct: 18  NARSKVAGLLARQTISPQQADAIGLFVWDWPNGPGDMAQRLAGLQAMGFEDSAAYSHPLE 77

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
           N  + A        +Y      R+ LP+  DG++ +  +    ++   +A +P W+ + K
Sbjct: 78  NYAKAARWRE---HWY------RNPLPFATDGVIMRQGQRPPMQRW--QASAPYWIAAWK 126

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
               QA   +  +   +GR+G +TPV  L PV +    ++  +  +    + L       
Sbjct: 127 HPYAQALAEVRKVSFNVGRSGRITPVLELTPVRLDDRTVSRISTGSLQRWQTL------- 179

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
               DIR GD+V V  AG  IP++  +I                     +  V  + P+ 
Sbjct: 180 ----DIRPGDQVAVSLAGLTIPRLDGVISRA------------------AERVEMIIPQA 217

Query: 450 GKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                ++  + T G  C +Q   RL     +    + G+G    D   ++      I   
Sbjct: 218 DDFHELSCWQATPG--CESQFRARLIWLSGKKGLALPGVGPGTWDKLIENGQ----IESL 271

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
            D  TL         ++ NI GF + S   L  S+   R    + ++ ++G+   G+
Sbjct: 272 LDWMTLNH------AELANIPGFAERSSAKLLASLQTARERPFQTWLKAIGLPPTGS 322


>gi|328790808|ref|XP_397246.4| PREDICTED: replication factor C subunit 1 [Apis mellifera]
          Length = 1009

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L  ++R +A+E V Q G  +   +++KTD IIVGD  G SKL KA  L +K ++
Sbjct: 289 FVITGVLDSLEREEAEELVKQYGGRILHQVTKKTDYIIVGDQAGPSKLSKADSLNIKKIS 348

Query: 711 EEQFLFLLQQYNTTLRI 727
           E+  L L+Q+ + + +I
Sbjct: 349 EDDLLDLIQEESPSKKI 365


>gi|32477333|ref|NP_870327.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica SH 1]
 gi|32447884|emb|CAD77402.1| probable DNA polymerase III polC-type [Rhodopirellula baltica SH 1]
          Length = 355

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 15/87 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E +K+VFTG LQK+QR +A+   ++ G    + +SRKTD+++VGD     ++ ++ + V
Sbjct: 266 LEGRKVVFTGVLQKLQREEAEMLTSRCGGKCQSSVSRKTDLVVVGDPDSRTVQASRTMSV 325

Query: 707 K---------------IMNEEQFLFLL 718
           K               IM E +FL ++
Sbjct: 326 KEATARQLAAEGAPLRIMTEHEFLEMI 352


>gi|50292909|ref|XP_448887.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528200|emb|CAG61857.1| unnamed protein product [Candida glabrata]
          Length = 854

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTGTL  I+R  A+    + GA V+  +S+KT ++++GD  G  KLEK + LG+K ++
Sbjct: 157 IVFTGTLPSIERGAAENLAKRYGARVTKSISKKTSVVVLGDEAGPKKLEKIKDLGIKAID 216

Query: 711 EEQFLFLL 718
           EE F  L+
Sbjct: 217 EEGFKQLI 224


>gi|116205063|ref|XP_001228342.1| hypothetical protein CHGG_10415 [Chaetomium globosum CBS 148.51]
 gi|88176543|gb|EAQ84011.1| hypothetical protein CHGG_10415 [Chaetomium globosum CBS 148.51]
          Length = 1060

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
            K  VFTG L+ I R + Q  V + G  V+   S KTD +++GD+ G SKL K ++ G+K
Sbjct: 316 GKSFVFTGLLKTISREEGQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHGIK 375

Query: 708 IMNEEQFLFLLQ 719
            ++EE   +L++
Sbjct: 376 TIDEEGLFYLIK 387


>gi|289804479|ref|ZP_06535108.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 119

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    + K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115

Query: 134 IDG 136
           +DG
Sbjct: 116 LDG 118


>gi|260827655|ref|XP_002608780.1| hypothetical protein BRAFLDRAFT_183645 [Branchiostoma floridae]
 gi|229294132|gb|EEN64790.1| hypothetical protein BRAFLDRAFT_183645 [Branchiostoma floridae]
          Length = 756

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ ++RH+A+E V + G  V++ +S++T  ++VG + G SKL+K  QLG+K ++
Sbjct: 69  FVLTGILESMERHEAKELVERYGGKVTSSVSKRTSYVVVGRDAGESKLDKVSQLGLKTLD 128

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 129 EDGLLELVK 137


>gi|149928190|ref|ZP_01916435.1| DNA ligase [Limnobacter sp. MED105]
 gi|149823081|gb|EDM82321.1| DNA ligase [Limnobacter sp. MED105]
          Length = 93

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K  V TGTL +  R +A   +   G  V+  +S+KTD ++ G+  GSKLEKA  LGV ++
Sbjct: 25  KTFVLTGTLSQYSRDEAGALIVARGGKVTGSVSKKTDYLLAGEAAGSKLEKATALGVAVL 84

Query: 710 NEEQFLFLL 718
           +E  F  +L
Sbjct: 85  DESTFQGML 93


>gi|269860225|ref|XP_002649835.1| replication factor C subunit [Enterocytozoon bieneusi H348]
 gi|220066776|gb|EED44248.1| replication factor C subunit [Enterocytozoon bieneusi H348]
          Length = 570

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
           N   VFTG + K+ R  AQ  + QLG   ++ +S KT  +IVG++PG SKL+KA++LG+ 
Sbjct: 7   NYTFVFTGIM-KMDREHAQFQIRQLGHRSTSAISGKTTHLIVGNDPGVSKLKKAKELGIL 65

Query: 708 IMNEEQFLFLLQQYNTTLR 726
           I+NE +F  LL +   +++
Sbjct: 66  ILNETEFEQLLHKMQESVK 84


>gi|327537942|gb|EGF24639.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica WH47]
          Length = 355

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 15/87 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E +K+VFTG LQK+QR +A+   ++ G    + +SRKTD+++VGD     ++ ++ + V
Sbjct: 266 LEGRKVVFTGVLQKLQREEAEMLTSRCGGKCQSNVSRKTDLVVVGDPDSRTVQASRTMSV 325

Query: 707 ---------------KIMNEEQFLFLL 718
                          KIM E +FL ++
Sbjct: 326 KEATARQLAAEGAPLKIMTEHEFLEMI 352


>gi|156841650|ref|XP_001644197.1| hypothetical protein Kpol_1059p29 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114834|gb|EDO16339.1| hypothetical protein Kpol_1059p29 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 858

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG L  ++R  A+    + GA V++ +SRKT ++++G+  G  K+EK +QLGVK +N
Sbjct: 153 IVFTGVLPTLERGNAETLAKRYGARVTSSISRKTSVVVLGEEAGPKKVEKIKQLGVKAIN 212

Query: 711 EEQFLFLL 718
           E+ F  L+
Sbjct: 213 EDGFKQLI 220


>gi|57168175|ref|ZP_00367314.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
 gi|57020549|gb|EAL57218.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
          Length = 141

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 5/117 (4%)

Query: 605 GDIIAQAIVEFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G+ +A ++ EF + N   I     LL      +   E +V   I  K  V TG L +  R
Sbjct: 29  GEQMALSLCEFSRVNSARIDEFYKLLNLKEQKVQIQEDSV---IFGKTFVITGALSR-PR 84

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +  +  LG  VS  +S+KTD ++ G   GSKL+KAQ+LGVK ++E +F  L+++
Sbjct: 85  DEFKNLIESLGGKVSGSVSKKTDYVLFGQEAGSKLDKAQELGVKCIDENEFNELIEK 141


>gi|238764311|ref|ZP_04625262.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
 gi|238697462|gb|EEP90228.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
          Length = 243

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 34/230 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI--AHAFPDLARSED 70
           S E+   E++ LE+++   D  Y+Q    ++ D+ YD L+ +       H  PD   S  
Sbjct: 30  SEERMSGEINLLEKQLFLWDVAYHQQGISLLPDNVYDQLQDKLHGWRSCHGLPDKKNS-- 87

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
                  I G       K  H +    L+K+ +   L  ++      W           +
Sbjct: 88  -----TLIAGN-----GKSPHPVAHTGLKKLKDETALIDWMAGRKNLW-----------V 126

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PKIDG  +T+ Y+ G       RG+G  G+D +     I  IP+ ++   P ++ ++GE
Sbjct: 127 QPKIDGVAVTLVYQAGNLTQILSRGNGLKGQDWTDKAPFISAIPQYIAA-APPLLTLQGE 185

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240
           +      FL +     A  +    N R + +G L R + T +   L  F+
Sbjct: 186 L------FLQMEGHQQA--QSGGVNARASVAGALMRKSATPLLAKLGIFI 227


>gi|330883607|gb|EGH17756.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 94

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 41/63 (65%)

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+
Sbjct: 21  VLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDED 80

Query: 713 QFL 715
             L
Sbjct: 81  ALL 83


>gi|330883891|gb|EGH18040.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 105

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ YE G+ V A  RGDG  G+D ++  R I TIP+   L  PE   ++G
Sbjct: 31  IQPKVDGVAVTLVYENGQLVQAISRGDGRKGQDWTSQARLIKTIPQ--HLPQPESAILQG 88

Query: 190 EVYISKNDFL 199
           E+Y   +D +
Sbjct: 89  ELYWRLDDHI 98


>gi|302694127|ref|XP_003036742.1| hypothetical protein SCHCODRAFT_46550 [Schizophyllum commune H4-8]
 gi|300110439|gb|EFJ01840.1| hypothetical protein SCHCODRAFT_46550 [Schizophyllum commune H4-8]
          Length = 862

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L    R +A E   + G  V+   S KTD +++GDN G SKL   ++ G+K +N
Sbjct: 203 FVFTGELSAFSRDEAVELAKRFGGRVTGQPSGKTDYVVLGDNAGDSKLRAIKKHGLKTLN 262

Query: 711 EEQFLFLLQQYNTTLRIHDDD 731
           E++FL L+   N   ++  D+
Sbjct: 263 EDEFLALVGSRNKDGKMKVDE 283


>gi|156359338|ref|XP_001624727.1| predicted protein [Nematostella vectensis]
 gi|156211524|gb|EDO32627.1| predicted protein [Nematostella vectensis]
          Length = 793

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706
           E    V TG L  I+R  AQ+ + + G  V+  +S+KT  ++VG + G SKL KAQ LG 
Sbjct: 56  EGLTFVVTGVLDSIERDHAQDLIQRYGGKVTGSVSKKTSYLLVGRDAGASKLSKAQTLGT 115

Query: 707 KIMNEEQFLFLLQ 719
           K ++E+ FL L++
Sbjct: 116 KQLDEDAFLDLIR 128


>gi|196234149|ref|ZP_03132982.1| DNA ligase (NAD(+)) [Chthoniobacter flavus Ellin428]
 gi|196221800|gb|EDY16337.1| DNA ligase (NAD(+)) [Chthoniobacter flavus Ellin428]
          Length = 122

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L Q++  H+  YY  + P I D++YDAL R    +  A P+      P+ P  +
Sbjct: 5   QTRIEELRQQLEEHNRRYYDEATPTISDADYDALFRELRDLEDAHPEFI---TPDSPTRR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK 109
           +G +      +V H++P LSL+ ++  E LR+
Sbjct: 62  VGEKATAGFRQVRHAVPMLSLDNLFAKEGLRR 93


>gi|300856782|ref|YP_003781766.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii
           DSM 13528]
 gi|300436897|gb|ADK16664.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii
           DSM 13528]
          Length = 436

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 14/95 (14%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP------- 694
           + S+   NK +VFTG L+ + R +A + V  LG  + + +S+KTD +IVG+         
Sbjct: 227 DTSNPFYNKNVVFTGELKSLGRKEAMQKVVNLGGTLKSGVSKKTDYLIVGNQDKSLVGEN 286

Query: 695 --GSKLEKAQQL-----GVKIMNEEQFLFLLQQYN 722
              SK EKA +L      +KI+NE +FL L++  N
Sbjct: 287 GISSKEEKAAELNENGSSIKILNESEFLELIKTPN 321


>gi|207110333|ref|ZP_03244495.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 112

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 16/110 (14%)

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
           E L HF S+DA NI+GLG + ++  F+ E   F+     D++ L         K+E+++ 
Sbjct: 1   ESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN---ALDLYAL---------KLEDLMR 47

Query: 530 FGDVSVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                +    NL D+I K +N  L R I +LGI H+G   +++LA+Y L+
Sbjct: 48  LDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLARYGLN 97


>gi|302564339|ref|NP_001082960.2| replication factor C subunit 1 [Danio rerio]
          Length = 1147

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ ++R +A+  + + G  V+  +SRKT  +++G + G SK EKA+  G KI+N
Sbjct: 408 FVLTGVLESMERDEAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAESFGTKIIN 467

Query: 711 EEQFLFLLQ 719
           E++ L L++
Sbjct: 468 EDELLDLIR 476


>gi|302307023|ref|NP_983504.2| ACR102Wp [Ashbya gossypii ATCC 10895]
 gi|299788800|gb|AAS51328.2| ACR102Wp [Ashbya gossypii ATCC 10895]
          Length = 840

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG L  I R  A+    + GA V+  +S KT ++++GD  G  KLEK +QLG+K ++
Sbjct: 152 MVFTGVLPNIDRPAAEALAKKYGARVTKSISSKTSVVVLGDEAGPKKLEKIRQLGIKAID 211

Query: 711 EEQFLFLL 718
           E  F  L+
Sbjct: 212 ENGFRQLI 219


>gi|167520484|ref|XP_001744581.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776912|gb|EDQ90530.1| predicted protein [Monosiga brevicollis MX1]
          Length = 554

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
           K V TG L+ ++R   QE V   G V+   +S++ D ++ GD PG SK+ KA+ L +K++
Sbjct: 10  KFVITGVLESLEREDVQELVKDHGGVIQKSVSKRVDYVVAGDEPGPSKMSKARDLKLKVL 69

Query: 710 NEEQFLFLLQ 719
           +E+    L++
Sbjct: 70  DEDGLFELIR 79


>gi|141795347|gb|AAI39656.1| Zgc:162875 protein [Danio rerio]
          Length = 529

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ ++R +A+  + + G  V+  +SRKT  +++G + G SK EKA+  G KI+N
Sbjct: 408 FVLTGVLESMERDEAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAESFGTKIIN 467

Query: 711 EEQFLFLLQ 719
           E++ L L++
Sbjct: 468 EDELLDLIR 476


>gi|311977685|ref|YP_003986805.1| DNA ligase [Acanthamoeba polyphaga mimivirus]
 gi|82000023|sp|Q5UPZ0|DNLJ_MIMIV RecName: Full=DNA ligase; AltName: Full=NAD-dependent DNA ligase;
           AltName: Full=Polydeoxyribonucleotide synthase [NAD+]
 gi|55416925|gb|AAV50575.1| NAD-dependent DNA ligase [Acanthamoeba polyphaga mimivirus]
 gi|308204745|gb|ADO18546.1| DNA ligase [Acanthamoeba polyphaga mimivirus]
          Length = 636

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 155/724 (21%), Positives = 274/724 (37%), Gaps = 147/724 (20%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + +E+ +S   + Y+     +I D EYD L  R   +  +    A+   P      + G+
Sbjct: 23  TDIEEALSVSSEYYHNTGTSLISDQEYDILMDRLKELNPSSKIFAQVGAP------VKGK 76

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG--TMI 139
                 KV       S+ KI       K   +    W   ++ S  + +  K+DG   ++
Sbjct: 77  ------KVKLPFWMGSMNKI-------KADEKAVNKWL--NEYSGPYVISDKLDGISCLL 121

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           TI+  K K      RGDG  G+D++  +  I  I   L   I + I +RGE+ +SK +F 
Sbjct: 122 TIKNNKTKLY---TRGDGTYGQDITHLLGLI-NIDIGLLEEIDQDIAIRGELIMSKKNFE 177

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
              + M        AN RN   GI+    P  + +              IF    YE+++
Sbjct: 178 KYQEIM--------ANARNMVGGIVNS-KPESVNK------DHAADVDLIF----YEVIK 218

Query: 260 KMRCLGFPVNNGVRQANTFH--GI-VSYYNEMKS-----IRSTLP-------YDIDGLVY 304
                  P +   RQ       G+ V YYN  K+     + S L        Y+IDG++ 
Sbjct: 219 -------PNDKLSRQLKILKEWGLKVVYYNIYKTFDVNILESVLSERKKKSGYEIDGIIV 271

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
             +     K +   + +P +  + K       T +  +     + G+L P  + + V + 
Sbjct: 272 TDN----NKHVRNISGNPSYSFAFKGDTPTIDTVVKRVIWTPSKDGVLVPRIKFKKVRLS 327

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVK--RAGEVIPKVVDIIVNERH 422
              +   T  N  YI              D ++G   ++   R+G+VIP +  ++   + 
Sbjct: 328 NVDLEYTTGFNAKYI-------------VDNKIGSGAIINVVRSGDVIPYITHVVKPAKK 374

Query: 423 PDAQPFSFPSFCPICQSR----VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           PD      P+   +        ++ D+N     ++                +RL  F+  
Sbjct: 375 PD-----LPNIEYVWDKNGVNIILADINDNETVII----------------KRLTKFMRN 413

Query: 479 -DAFNI-EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL--GFGDVS 534
             A NI EG+  + ++  F +  P        D  T+   Q+    KI N L     ++ 
Sbjct: 414 IGAENISEGITTRLVEAGFDTI-PKIINMTEEDFLTIDGFQERLAEKIYNNLQNSLDNLD 472

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN-FAQEINNIIAHNND 593
           +  L D+ N          IF    R  G +  + +   Y +  N + +E +NI      
Sbjct: 473 ILTLMDASN----------IFG---RGFGTKKFKKILDVYPNIVNQYTKETDNI------ 513

Query: 594 DW-LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
            W   L+ +     I     +    N +    V      + P I   E N     +N+ +
Sbjct: 514 -WRKKLLDIEGFDTITVNKFLGEMPNFQKFYKVINKTITIKPYIS--EVNSEGIFQNQTV 570

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV--GDNPGSKLEKAQQLGVKIMN 710
           VFTG     +    Q+++   G  VS  +S+ T +++   G+   +K +KA+QLG+K M 
Sbjct: 571 VFTG----FRNADWQKFIENEGGKVSGSVSKNTSLLVYNDGEESSAKYQKAKQLGIKTMT 626

Query: 711 EEQF 714
           +  F
Sbjct: 627 KSSF 630


>gi|58260802|ref|XP_567811.1| purine nucleotide binding protein [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134117247|ref|XP_772850.1| hypothetical protein CNBK2210 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255468|gb|EAL18203.1| hypothetical protein CNBK2210 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229892|gb|AAW46294.1| purine nucleotide binding protein, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 1001

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG ++ + R  AQE V +    V+   S KT  ++VG+N G SKL K ++  + ++N
Sbjct: 279 FVFTGEMESLGREDAQELVRRYSGKVTTAPSGKTSYVVVGENAGVSKLNKVKEKKIPMIN 338

Query: 711 EEQFLFLLQQYNT 723
           E++FL L++Q ++
Sbjct: 339 EDEFLELIRQRSS 351


>gi|213850350|ref|ZP_03381248.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 110

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRV 98


>gi|9631366|ref|NP_048233.1| ORF MSV162 putative NAD+ dependent DNA ligase, similar to Thermus
           thermophilus SW:P26996 [Melanoplus sanguinipes
           entomopoxvirus]
 gi|4049719|gb|AAC97679.1| ORF MSV162 putative NAD+ dependent DNA ligase, similar to Thermus
           thermophilus SW:P26996 [Melanoplus sanguinipes
           entomopoxvirus]
          Length = 522

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 184/436 (42%), Gaps = 98/436 (22%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           L  + + I   ++ YY+  + +I D  YD +    + +   +PD       N    KIG 
Sbjct: 22  LEDISEIIKILNEKYYE-GETLISDEIYDKI---IEYVNKKYPD-------NDITKKIGY 70

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E      KV       S  KI++ ED +KF   I ++      +SI  ++  K DG  I+
Sbjct: 71  E---PKNKVKLPYYMGSENKIYD-EDEKKFNNWIEKYGT----SSIIVSV--KADG--IS 118

Query: 141 IRYEKGKF-VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKND 197
           + ++ GK  +Y   RGDG+ G+D+S  ++        ++ ++PE+ +  +RGE+ I+K+ 
Sbjct: 119 VLWDIGKNKLYT--RGDGNYGKDISWFLK-------YMNYDLPELSDYVIRGELVINKD- 168

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT---DITRYLNFFVHGL----GKTSEIF 250
                              RN  +G +  L      DI + + F  + +          F
Sbjct: 169 -----------------KTRNDVAGAINSLEANRNEDILKEIYFVGYEILNPRFNQENQF 211

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K +   ++ ++ + + + +      +   +   Y E+K     + YDIDGLV + +  +
Sbjct: 212 KKLKQHKIRHIKAMKYDIEDV-----SLECLSELYQELKP---KMKYDIDGLVIRNNNVN 263

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
                G    +P W  ++K      +T++L++  QI +     P+A LEP+ +    I  
Sbjct: 264 DPITDG----NPPWSFAYKPPNTIYTTKVLNVIWQISKQNKYIPIAELEPIKLENKTIKR 319

Query: 371 ATLHNEDYIK----GLDASGKV-MRGGRDIRVGDRVLVKRAGEVIPKVVDII----VNER 421
            + +N  ++     G DA  ++  RGG                 IPK+V++I    V+E 
Sbjct: 320 VSCYNAKFVTENGIGTDAIVEIEYRGG----------------AIPKLVNVIKPVTVDES 363

Query: 422 H-PDAQPFSFPSFCPI 436
             PD +      + PI
Sbjct: 364 DLPDGKIIDNHLYAPI 379


>gi|171689552|ref|XP_001909716.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944738|emb|CAP70849.1| unnamed protein product [Podospora anserina S mat+]
          Length = 912

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKI 708
           K  VFTG L+ I R   Q  V + G  V+   S KTD +++GD+ G SKL K ++  +K 
Sbjct: 269 KTFVFTGLLKTISREDGQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHNIKT 328

Query: 709 MNEEQFLFLLQ 719
           ++EE   +L++
Sbjct: 329 IDEEGLFYLIK 339


>gi|300706363|ref|XP_002995454.1| hypothetical protein NCER_101643 [Nosema ceranae BRL01]
 gi|239604566|gb|EEQ81783.1| hypothetical protein NCER_101643 [Nosema ceranae BRL01]
          Length = 598

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGV 706
           +NK  VFTG L  + R  A+  V  LG  V+   S+KTD ++VG  PG  KL+KAQ L +
Sbjct: 6   KNKTFVFTGELT-LDREYAKSKVILLGGRVTIAPSKKTDFLVVGAEPGPVKLKKAQDLNI 64

Query: 707 KIMNEEQF 714
           KI+ E++F
Sbjct: 65  KIIYEQEF 72


>gi|313760612|ref|NP_001186496.1| replication factor C (activator 1) 1, 145kDa [Xenopus (Silurana)
           tropicalis]
          Length = 1144

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG L+ I+R +A+  V + G  V+  +S+KT+ II+G + G SK EKA+  G
Sbjct: 396 MEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFG 455

Query: 706 VKIMNEEQFLFLLQ 719
            KI++E+  L L++
Sbjct: 456 TKILDEDGLLNLIR 469


>gi|315282736|ref|ZP_07871076.1| DNA ligase, NAD-dependent [Listeria marthii FSL S4-120]
 gi|313613623|gb|EFR87427.1| DNA ligase, NAD-dependent [Listeria marthii FSL S4-120]
          Length = 69

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 39/58 (67%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           L+K+ R+ A+  +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +
Sbjct: 1   LEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLI 58


>gi|109287930|ref|YP_654624.1| hypothetical protein MIV052L [Invertebrate iridescent virus 3]
 gi|123878657|sp|Q197A8|VF205_IIV3 RecName: Full=Putative DNA ligase 052L
 gi|106073553|gb|ABF82082.1| hypothetical protein MIV052L [Aedes taeniorhynchus iridescent
           virus]
          Length = 756

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 163/426 (38%), Gaps = 85/426 (19%)

Query: 32  DDCYYQ-YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           D  YY     PI+ D EYD L    D +    PD        G   K+G   + S   V 
Sbjct: 20  DKAYYNGVGDPIMSDEEYDNL---VDYMDELNPD-------GGVKTKVGASPSRSK-SVK 68

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG----TMITIRYEKG 146
             +P  SL+KI    +   ++    + W+ K        ++ K+DG     + T+   K 
Sbjct: 69  LPMPMNSLDKIKTQHEFDNWM----KNWKPK----AMLLVKEKLDGVSCLAVFTLEQNKP 120

Query: 147 KFVYAALRGDGHSGEDVS----------------------------ACIRAIPTIPRVLS 178
             +    RGDG +G +++                             C      I     
Sbjct: 121 PKIELFTRGDGTTGTNITRLLNHGLKVGNDYCFDDMVNEDKWTTDWGCYLNAEAIDHWKK 180

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLN 237
           L + ++  +RGE+ +++ +F              + N RN  SG + + +P   I + ++
Sbjct: 181 LPVKKVY-IRGELIVTRKNFQTWYSNR-------FMNARNLVSGQVNKKSPDPKILQDID 232

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGF------PVNNGVRQANTFHGIVSYYNEMKSI 291
           F  + L     +    +  M  ++  L F      PV       +      S  + ++  
Sbjct: 233 FVPYDL-----VIDLKRPTMTHEVEHLLFRMIGATPVYTRFLFLSDTISTESMADYLERR 287

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           +    Y+IDGLV +VD+ +L      R  +P+  ++ K     A T +  ++  + +   
Sbjct: 288 KEKSDYEIDGLVIQVDDDTLFAPPDNR--NPKDTVAFKIMGTTARTTVTHVEWNLSKGSK 345

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
             P   + PV++ G  I+  T  +  YI    +  K+ +G         VL+ R+GEVIP
Sbjct: 346 YKPTIHITPVSLSGVTISKVTGFHGKYI----SENKIGKGA-------VVLITRSGEVIP 394

Query: 412 KVVDII 417
            +V +I
Sbjct: 395 HIVSVI 400


>gi|313608258|gb|EFR84263.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL F2-208]
          Length = 70

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 39/58 (67%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           L+K+ R+ A+  +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +
Sbjct: 2   LEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLI 59


>gi|150864993|ref|XP_001384033.2| hypothetical protein PICST_35815 [Scheffersomyces stipitis CBS
           6054]
 gi|149386249|gb|ABN66004.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 764

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG L ++ R  ++    + GA V+  +S KT ++++GD  G SK++K + L +K +N
Sbjct: 57  IVFTGVLPRLDRDTSENLAKRYGAKVTKSISGKTSLVVIGDEAGPSKIKKIKSLHIKAIN 116

Query: 711 EEQFLFLLQ 719
           E+ F+ LLQ
Sbjct: 117 EDGFIQLLQ 125


>gi|89268749|emb|CAJ82643.1| replication factor C (activator 1) 1 [Xenopus (Silurana)
           tropicalis]
          Length = 510

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  V + G  V+  +S+KT+ II+G + G SK EKA+  G KI++
Sbjct: 401 FVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGTKILD 460

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 461 EDGLLNLIR 469


>gi|310794495|gb|EFQ29956.1| replication factor RFC1 C terminal domain-containing protein
           [Glomerella graminicola M1.001]
          Length = 1026

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG LQ + R + Q  V + G  V+   S KT  +++GD+ G SKL+K + + +K +N
Sbjct: 312 FVFTGVLQTLGREEGQALVKKYGGKVTGAPSSKTSYVVLGDDAGPSKLKKIRDMNIKTIN 371

Query: 711 EEQFLFLLQQ 720
           EE    L+++
Sbjct: 372 EEGLFELIRR 381


>gi|213421873|ref|ZP_03354939.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 73

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +   + ++G
Sbjct: 9   VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQG 67

Query: 190 EVYISK 195
           E+++ +
Sbjct: 68  EIFLQR 73


>gi|327273243|ref|XP_003221390.1| PREDICTED: replication factor C subunit 1-like [Anolis
           carolinensis]
          Length = 1124

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ ++ G + G SK EKA  LG
Sbjct: 389 LEGMTFVITGVLESIERDEAKSLIERYGGKVTGNISKKTNFLVKGRDCGLSKCEKASALG 448

Query: 706 VKIMNEEQFLFLLQQ 720
            KI++E+    L+Q+
Sbjct: 449 TKIIDEDGLFDLIQK 463


>gi|207109383|ref|ZP_03243545.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 53

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 37/50 (74%)

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           LGA +S+ +S KTD +I G+NPGSKL  A++ GV ++NEE+ L  L++ +
Sbjct: 4   LGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKELD 53


>gi|312213054|emb|CBX93136.1| similar to chromosome transmission fidelity factor [Leptosphaeria
           maculans]
          Length = 1098

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG LQ+  R +AQE V + G  V+   S+KT+ +++G + G SKL+K + + +K ++
Sbjct: 367 FVFTGVLQRWGRTEAQELVKRHGGKVTGAPSKKTNYVVLGSDAGPSKLQKIKDMDIKTID 426

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 427 EDGLTLLIEK 436


>gi|90019261|gb|ABD84282.1| NAD-dependent DNA ligase-like [Yersinia sp. MH-1]
          Length = 167

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 12/106 (11%)

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           +++H +    L+K+     L +++      W           ++PK+DG  +T+ Y +G 
Sbjct: 46  RLSHPVAHTGLKKLHGKGALSEWLAERKNLW-----------VQPKVDGVAVTLTYVQGN 94

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
              A  RGDG  G++ +  ++ IP IP  +S   P ++ + GE+++
Sbjct: 95  LTQAISRGDGAVGQNWTDKVKYIPAIPHFIS-QAPPLLVLHGELFL 139


>gi|321264327|ref|XP_003196881.1| DNA replication activator 1 subunit1 (Replication factor C subunit
           1) [Cryptococcus gattii WM276]
 gi|317463358|gb|ADV25094.1| DNA replication activator 1 subunit1 (Replication factor C subunit
           1), putative [Cryptococcus gattii WM276]
          Length = 991

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG ++ + R  AQE V +    V+   S KT  ++VG+N G SKL K ++  + +++
Sbjct: 271 FVFTGEMESLGREDAQELVRRYSGKVTTAPSGKTSYVVVGENAGVSKLNKVKEKKIPMID 330

Query: 711 EEQFLFLLQQ 720
           E++FL L++Q
Sbjct: 331 EDEFLELIRQ 340


>gi|151945307|gb|EDN63550.1| replication factor C subunit 1 [Saccharomyces cerevisiae YJM789]
          Length = 861

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           E++  IG   +   + +    +VFTG L  ++R  ++    + GA V+  +S KT ++++
Sbjct: 142 EIASEIGSFPEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVL 201

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           GD  G  KLEK +QL +K ++EE F  L+
Sbjct: 202 GDEAGPKKLEKIKQLKIKAIDEEGFKQLI 230


>gi|190345075|gb|EDK36893.2| hypothetical protein PGUG_00991 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 708

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG L  + R +A+    Q GA V+  +S KT ++++GD  G SK++K +   +K + 
Sbjct: 17  IVFTGVLPNLDRDQAEGLAKQYGAKVTKAISGKTSLVVLGDEAGPSKVQKIKANKIKAIT 76

Query: 711 EEQFLFLLQQ 720
           EE FL LL++
Sbjct: 77  EESFLELLRR 86


>gi|326427870|gb|EGD73440.1| DNA ligase [Salpingoeca sp. ATCC 50818]
          Length = 664

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NP-GSKLE 699
            +S I + K+VFTGT +   R   +   ++LGA+V + +S KTD++++G    P G+K +
Sbjct: 159 TASSIRDLKVVFTGTFESGIRRVVENEASKLGAIVGSSVSSKTDLLVIGGLVRPFGAKED 218

Query: 700 KAQQLGVKIMNEEQF 714
           +A  LGV+++ E+++
Sbjct: 219 RASDLGVRVIFEKEW 233


>gi|6561410|gb|AAF16907.1|AF173987_5 DNA ligase [Rhodothermus marinus DSM 4252]
          Length = 154

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 3/113 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +EA+  ++A    + L + ++ H   YY    P+I D++YD L +    +   FP+L   
Sbjct: 30  LEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV-- 87

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
             P+ P  ++GG       KV H  P LSL   +  ED+R +  R  R   ++
Sbjct: 88  -TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAER 139


>gi|146423370|ref|XP_001487614.1| hypothetical protein PGUG_00991 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 708

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG L  + R +A+    Q GA V+  +S KT ++++GD  G SK++K +   +K + 
Sbjct: 17  IVFTGVLPNLDRDQAEGLAKQYGAKVTKAISGKTSLVVLGDEAGPSKVQKIKANKIKAIT 76

Query: 711 EEQFLFLLQQ 720
           EE FL LL++
Sbjct: 77  EESFLELLRR 86


>gi|190407527|gb|EDV10794.1| replication factor C subunit 1 [Saccharomyces cerevisiae RM11-1a]
          Length = 861

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG L  ++R  ++    + GA V+  +S KT ++++GD  G  KLEK +QL +K ++
Sbjct: 163 IVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKLEKIKQLKIKAID 222

Query: 711 EEQFLFLL 718
           EE F  L+
Sbjct: 223 EEGFKQLI 230


>gi|6324791|ref|NP_014860.1| Rfc1p [Saccharomyces cerevisiae S288c]
 gi|584899|sp|P38630|RFC1_YEAST RecName: Full=Replication factor C subunit 1; Short=Replication
           factor C1; AltName: Full=Activator 1 95 kDa subunit;
           AltName: Full=Cell division control protein 44
 gi|437274|gb|AAC48916.1| Cdc44p [Saccharomyces cerevisiae]
 gi|841462|gb|AAC49060.1| Rfc1p [Saccharomyces cerevisiae]
 gi|1050769|emb|CAA63180.1| CDC44 [Saccharomyces cerevisiae]
 gi|1420505|emb|CAA99434.1| RFC1 [Saccharomyces cerevisiae]
 gi|256269587|gb|EEU04869.1| Rfc1p [Saccharomyces cerevisiae JAY291]
 gi|259149697|emb|CAY86501.1| Rfc1p [Saccharomyces cerevisiae EC1118]
 gi|285815096|tpg|DAA10989.1| TPA: Rfc1p [Saccharomyces cerevisiae S288c]
          Length = 861

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG L  ++R  ++    + GA V+  +S KT ++++GD  G  KLEK +QL +K ++
Sbjct: 163 IVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKLEKIKQLKIKAID 222

Query: 711 EEQFLFLL 718
           EE F  L+
Sbjct: 223 EEGFKQLI 230


>gi|325474100|gb|EGC77288.1| hypothetical protein HMPREF9353_01638 [Treponema denticola F0402]
          Length = 207

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 98/214 (45%), Gaps = 22/214 (10%)

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D++TL   +  +  ++      G +S   +Y +++ ++ ISL  FI    I  +G  +  
Sbjct: 9   DLYTLTVEELAAIDRM------GKLSAEKVYKALHSKKEISLTEFIAGFDIEGIGETMVE 62

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA--VE 626
            L +   +      ++N ++  +  D+ ++ +    G +++  +V      ++     ++
Sbjct: 63  KLEEAGFN------DLNELLRASEADFANVYQF---GQVLSHTLVTNLSILKDEMTGLID 113

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
               ++ P +   E  V   ++     FTG L  ++R +A+  V + G  V + + +   
Sbjct: 114 KGYIKIKPQLTSEEGAV---LKGLSFCFTGELNTMKRAQAEALVKEKGGTVKSSVVKGLS 170

Query: 687 IIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            ++    D+  SK +KAQ+LG  I+ EE FL L+
Sbjct: 171 YLVTNTPDSGSSKNKKAQELGTAIITEEAFLNLI 204


>gi|148705785|gb|EDL37732.1| replication factor C 1, isoform CRA_a [Mus musculus]
          Length = 1160

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 413 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 472

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK +KA  LG KI++E+  L L++
Sbjct: 473 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 507


>gi|195940543|ref|ZP_03085925.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 98

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRV 98


>gi|47210904|emb|CAF94208.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 775

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG L+ ++R + +  + + G  V+  +S+KT  ++ G + G SKLEKA+ LG
Sbjct: 19  LEGCVFVLTGVLESMERDETKSLIERYGGKVTGNISKKTTYLVQGRDCGVSKLEKAESLG 78

Query: 706 VKIMNEEQFLFLLQ 719
            KI++E+  L L++
Sbjct: 79  TKILDEDGLLELIR 92


>gi|148705786|gb|EDL37733.1| replication factor C 1, isoform CRA_b [Mus musculus]
          Length = 1157

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 409 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 468

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK +KA  LG KI++E+  L L++
Sbjct: 469 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 503


>gi|257471690|pdb|2K7F|A Chain A, Haddock Calculated Model Of The Complex Between The Brct
           Region Of Rfc P140 And Dsdna
 gi|259090084|pdb|2K6G|A Chain A, Solution Structure Of The Dna Binding Brct Domain From The
           Large Subunit Of Human Replication Factor C
          Length = 109

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 12  LNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 71

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK +KA  LG KI++E+  L L++
Sbjct: 72  NYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIR 106


>gi|328770979|gb|EGF81020.1| hypothetical protein BATDEDRAFT_653 [Batrachochytrium dendrobatidis
           JAM81]
          Length = 696

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG +    R  A + V + G  V    S KT  ++VG++PG SKL+K + L +K+++
Sbjct: 26  FVFTGEMPSFSREDATDLVKRYGGRVVGAPSSKTSYVVVGEDPGESKLKKVRDLKLKVLD 85

Query: 711 EEQFLFLLQQ 720
           E+ F+ L+  
Sbjct: 86  EDSFVNLISS 95


>gi|460932|gb|AAC52140.1| ISRE-binding protein [Mus musculus]
          Length = 1145

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 397 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 456

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK +KA  LG KI++E+  L L++
Sbjct: 457 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 491


>gi|405112|gb|AAA21643.1| activator 1 large subunit [Mus musculus]
          Length = 1131

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 442

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK +KA  LG KI++E+  L L++
Sbjct: 443 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 477


>gi|1703056|sp|P35601|RFC1_MOUSE RecName: Full=Replication factor C subunit 1; AltName:
           Full=A1-P145; AltName: Full=Activator 1 140 kDa subunit;
           Short=A1 140 kDa subunit; AltName: Full=Activator 1
           large subunit; AltName: Full=Activator 1 subunit 1;
           AltName: Full=Differentiation-specific element-binding
           protein; AltName: Full=ISRE-binding protein; AltName:
           Full=Replication factor C 140 kDa subunit; Short=RF-C
           140 kDa subunit; Short=RFC140; AltName: Full=Replication
           factor C large subunit
 gi|457742|emb|CAA51260.1| replication factor C [Mus musculus]
          Length = 1131

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 442

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK +KA  LG KI++E+  L L++
Sbjct: 443 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 477


>gi|188219597|ref|NP_035388.2| replication factor C subunit 1 [Mus musculus]
 gi|148705787|gb|EDL37734.1| replication factor C 1, isoform CRA_c [Mus musculus]
          Length = 1131

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 442

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK +KA  LG KI++E+  L L++
Sbjct: 443 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 477


>gi|1022776|gb|AAA79698.1| differentiation specific element binding protein [Mus musculus]
          Length = 1130

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 442

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK +KA  LG KI++E+  L L++
Sbjct: 443 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 477


>gi|54887426|gb|AAH85173.1| Rfc1 protein [Mus musculus]
          Length = 1132

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 442

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK +KA  LG KI++E+  L L++
Sbjct: 443 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 477


>gi|149035369|gb|EDL90073.1| replication factor C 1 [Rattus norvegicus]
          Length = 1131

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 382 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKT 441

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             +++G + G SK +KA  LG KI++E+  L L++
Sbjct: 442 SYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 476


>gi|255713750|ref|XP_002553157.1| KLTH0D10296p [Lachancea thermotolerans]
 gi|238934537|emb|CAR22719.1| KLTH0D10296p [Lachancea thermotolerans]
          Length = 864

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG L  I+R  A+    + GA V+  +S KT ++++GD  G  KLEK +QL +K ++
Sbjct: 167 IVFTGQLPTIERGVAEAIAKRYGARVTKSISSKTSVVVLGDEAGPKKLEKIKQLKIKAID 226

Query: 711 EEQFLFLL 718
           E+ F  L+
Sbjct: 227 EDGFKQLV 234


>gi|219113609|ref|XP_002186388.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583238|gb|ACI65858.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 942

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEKAQQ 703
            VF+G L  + R   QE V  LG  ++  +S  T+ ++VG+          GSK ++A Q
Sbjct: 206 FVFSGVLPNLSREDGQEMVKTLGGRITGAVSSLTNYLVVGEELEDGRVYTEGSKYKRAVQ 265

Query: 704 LGVKIM-NEEQFLFLLQQYN 722
            G  I+  EE F  LLQQYN
Sbjct: 266 EGTHIVQGEEAFYGLLQQYN 285


>gi|189339249|ref|NP_445999.1| replication factor C (activator 1) 1 [Rattus norvegicus]
          Length = 1131

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 381 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKT 440

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             +++G + G SK +KA  LG KI++E+  L L++
Sbjct: 441 SYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 475


>gi|71018701|ref|XP_759581.1| hypothetical protein UM03434.1 [Ustilago maydis 521]
 gi|46099339|gb|EAK84572.1| hypothetical protein UM03434.1 [Ustilago maydis 521]
          Length = 950

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           LVFTG L+ I R +A +   + GA +++  S KT  +IVG+  G  KL+  ++  +K +N
Sbjct: 270 LVFTGELESISRDEASDLAKRYGARITSAPSSKTSYVIVGEGAGPKKLDLIRKNNIKTLN 329

Query: 711 EEQFLFLLQ 719
           E++FL L++
Sbjct: 330 EDEFLDLIR 338


>gi|309784374|ref|ZP_07679013.1| NAD-dependent DNA ligase OB-fold domain protein [Shigella
           dysenteriae 1617]
 gi|308927881|gb|EFP73349.1| NAD-dependent DNA ligase OB-fold domain protein [Shigella
           dysenteriae 1617]
          Length = 329

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/348 (20%), Positives = 131/348 (37%), Gaps = 75/348 (21%)

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFSLQ 312
           L+++   GF +        T+   V   +E+  +R     + LP+  DG+V +       
Sbjct: 5   LKELATAGFTLTQ------TYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRAA----- 53

Query: 313 KQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV +    + 
Sbjct: 54  KEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQ 113

Query: 370 NATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQ 426
              +            G V R    DI  GD++LV  AG+ IP++ D++    ER     
Sbjct: 114 RVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTP 161

Query: 427 PFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           P + F S      S V                      C  Q + RL    S+    ++G
Sbjct: 162 PENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLDG 199

Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+       ++   +  FS  +             +  +++N  G        L+   N
Sbjct: 200 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 247

Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEINNI 587
           + R     R++ ++GI      + A   RS ++  +S + F Q++  I
Sbjct: 248 QARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLVSTEQFWQQLPGI 295


>gi|254566547|ref|XP_002490384.1| Replication factor C subunit [Pichia pastoris GS115]
 gi|238030180|emb|CAY68103.1| Replication factor C subunit [Pichia pastoris GS115]
 gi|328350779|emb|CCA37179.1| Replication factor C subunit 1 [Pichia pastoris CBS 7435]
          Length = 908

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG +  I R +A+E   + GA V+  +S+KT ++++G   G SK++K +   +K ++
Sbjct: 228 MVFTGVMPTIDRTQAEELAKRYGAKVTKSVSKKTSVVVLGSEAGPSKVKKIKDFKIKAID 287

Query: 711 EEQFLFLLQ 719
           E+ F+ L++
Sbjct: 288 EDGFITLIK 296


>gi|322695637|gb|EFY87442.1| putative replication factor C protein [Metarhizium acridum CQMa
           102]
          Length = 1062

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG LQ I R +AQ  V + G  V+   S KT  +++GD+ G SKL K +  G+K ++
Sbjct: 347 FVFTGVLQTIGRDEAQALVKRYGGKVTGQPSSKTSFVVLGDDAGPSKLAKIKSHGIKTID 406

Query: 711 EEQFLFLLQQ 720
           E     L+++
Sbjct: 407 ENGLFDLIRK 416


>gi|320586272|gb|EFW98951.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
          Length = 1507

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 13/103 (12%)

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           P N  AVE  L E +P+           +  +  VFTG LQ I R + Q  V + G  V+
Sbjct: 738 PPNAGAVE--LPEGAPNC----------LVGQTFVFTGLLQTISRDEGQALVKRYGGKVT 785

Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
              SR T  +++GD+ G SKL K  QL ++ ++E     L+++
Sbjct: 786 TAPSRNTSWVVLGDDAGPSKLAKISQLSLRTIDENGLFELIKR 828


>gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
 gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
          Length = 306

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 14/86 (16%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNP 694
           S   ++K +VFTGTL+ + R  A + ++QLG  V + ++RKTD +IV             
Sbjct: 216 SDVFKHKTVVFTGTLKSMSRLSAIQLISQLGGTVGSSVTRKTDFLIVSHPAVYELQPHEM 275

Query: 695 GSKLEKAQQL-----GVKIMNEEQFL 715
            +KL+KA +L      ++I+NE +FL
Sbjct: 276 STKLKKAIELIYKGQAIQILNESEFL 301


>gi|34764321|ref|ZP_00145153.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27885903|gb|EAA23247.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 68

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           ++ K  +FTGTL+   R + +E + +LG    + +S+  D +IVG+  GSKL+KAQ+  +
Sbjct: 1   MQXKNFLFTGTLKHFTREQIKEEIEKLGGKNLSSVSKNLDYLIVGEKAGSKLKKAQRSTI 60

Query: 707 KIMNEEQF 714
           K + EE+ 
Sbjct: 61  KNITEEEL 68


>gi|50306785|ref|XP_453368.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642502|emb|CAH00464.1| KLLA0D06897p [Kluyveromyces lactis]
          Length = 835

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTGTL  + R  ++    + GA V+  +S+ T ++++G+  G  KLE  ++LG+K ++
Sbjct: 157 IVFTGTLPNLDRSTSENLAKRYGARVTKSISKNTSVVVLGEEAGPKKLENIKKLGIKAID 216

Query: 711 EEQFLFLL 718
           EE F  L+
Sbjct: 217 EEGFKRLI 224


>gi|322705232|gb|EFY96819.1| putative replication factor C protein [Metarhizium anisopliae ARSEF
           23]
          Length = 1030

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG LQ I R +AQ  V + G  V+   S KT  +++GD+ G SKL K +  G+K ++
Sbjct: 313 FVFTGVLQTIGRDEAQALVKRYGGKVTGQPSSKTSFVVLGDDAGPSKLAKIKSHGIKTID 372

Query: 711 EEQFLFLLQQ 720
           E     L+++
Sbjct: 373 ENGLFDLIRK 382


>gi|74222286|dbj|BAE26945.1| unnamed protein product [Mus musculus]
 gi|74226849|dbj|BAE27069.1| unnamed protein product [Mus musculus]
          Length = 584

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 409 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGHDSGQSKSDKAAALGTKILD 468

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 469 EDGLLDLIR 477


>gi|290991775|ref|XP_002678510.1| replication factor C large subunit [Naegleria gruberi]
 gi|284092123|gb|EFC45766.1| replication factor C large subunit [Naegleria gruberi]
          Length = 994

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +++K  V TG ++ + R + ++ + Q G V+   +S +T  ++VGD PG SK++K ++  
Sbjct: 279 LKDKSFVITGQMESLDRDEMEDLIKQYGGVIRGNVSGRTSFVVVGDGPGESKMKKVREHK 338

Query: 706 VKIMNEEQFLFLLQQYN 722
            K ++E+  L ++ + N
Sbjct: 339 TKQLSEDDLLEMIAKSN 355


>gi|159164362|pdb|2EBU|A Chain A, Solution Structure Of The Brct Domain From Human
           Replication Factor C Large Subunit 1
          Length = 112

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLE 699
           K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +
Sbjct: 17  KGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSD 76

Query: 700 KAQQLGVKIMNEEQFLFLLQ 719
           KA  LG KI++E+  L L++
Sbjct: 77  KAAALGTKIIDEDGLLNLIR 96


>gi|1066815|gb|AAA81558.1| nonamer binding protein [Mus musculus]
          Length = 428

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 351 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILD 410

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 411 EDGLLDLIR 419


>gi|237800438|ref|ZP_04588899.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|237806426|ref|ZP_04593130.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023297|gb|EGI03354.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331027539|gb|EGI07594.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 70

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 38/59 (64%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L
Sbjct: 1   SLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALL 59


>gi|67467166|ref|XP_649703.1| Activator 1 140 kDa subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56466194|gb|EAL44317.1| Activator 1 140 kDa subunit, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 718

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
           +E + K  V TG   ++ R + +EY+   G  V+  +S KT ++I G+  G SK+EKA++
Sbjct: 131 NEFQKKNFVLTGVYDELDRDEMKEYIISFGGNVATSISGKTAVLIAGEEAGPSKIEKAKE 190

Query: 704 LGVKIMNEEQFLFLLQQ 720
            G+ I +E+     ++Q
Sbjct: 191 KGIPIWSEDDVFNYVKQ 207


>gi|323195836|gb|EFZ81008.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
          Length = 380

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/435 (19%), Positives = 151/435 (34%), Gaps = 84/435 (19%)

Query: 215 NPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274
           N R+  +G+L R +       L  F+         +  G   M +++  L      G   
Sbjct: 17  NARSKVAGMLMRQDNASALNSLGIFIWA-------WPDGPANMPERLSQL---AKAGFSL 66

Query: 275 ANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
              +   V   +E++  R     S LP+  DG+V ++ +    +    R     W+ + K
Sbjct: 67  TKKYTLAVKDASEVERARQSWLTSALPFVTDGVVIRMAKEPAAQYW--RPGQGDWLAAWK 124

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           +       ++  I   +G++G +T VA L PV +    +    +            G V 
Sbjct: 125 YPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI------------GSVK 172

Query: 390 RG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------PDAQPFSFPSFCPICQSRVV 442
           R    DI  GD++LV  AG+ IP++ +++   R       PD+   S   F         
Sbjct: 173 RWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPDSHFNSLTCFY-------- 224

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
                                C  Q + RL    SR A  ++G+G+       ++    F
Sbjct: 225 -----------------ASATCQEQFISRLVWLGSRSALGLDGMGEASWRALHQTHR--F 265

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
                  IF+       ++ +I N  GF       ++   N  R     R+I ++ I   
Sbjct: 266 E-----HIFSW---LALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRWIMAMDIPLT 317

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
            A +  S  + +            ++      W  L   P  G+  A  ++++  NP+  
Sbjct: 318 QAALQASGDRSW----------EQLLMRTEQHWRQL---PSTGERRAGRVIDWRDNPQIK 364

Query: 623 CAVEALLKEVSPSIG 637
                L  +  P  G
Sbjct: 365 ALSRWLAAQHIPGFG 379


>gi|156087871|ref|XP_001611342.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798596|gb|EDO07774.1| conserved hypothetical protein [Babesia bovis]
          Length = 944

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 18/113 (15%)

Query: 630 KEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           KEV+P       NV+ E +   + VFTG L  I R    E V  LG + +  +S KT+ +
Sbjct: 299 KEVTP---HGASNVNKEKVVGMRFVFTGVLDAIDRDSVVELVRSLGGLTTGSVSSKTNYL 355

Query: 689 IVGD--------NPGSKLEKA------QQLGVKIMNEEQFLFLLQQYNTTLRI 727
           + G+          GSK +KA      +  G++++NE +FL L+   N + R+
Sbjct: 356 VYGEKLEDGRHYTTGSKYKKALEFNKTKDAGIQLLNESEFLALIDYQNVSSRL 408


>gi|260951239|ref|XP_002619916.1| hypothetical protein CLUG_01075 [Clavispora lusitaniae ATCC 42720]
 gi|238847488|gb|EEQ36952.1| hypothetical protein CLUG_01075 [Clavispora lusitaniae ATCC 42720]
          Length = 876

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG L  + R  A+    Q GA V+  +S+KT ++++G+  G SK++K +   +K ++
Sbjct: 149 IVFTGVLPNLDRDAAESIAKQYGARVTKSISKKTSLVVIGEEAGPSKVKKIKDFKIKAIS 208

Query: 711 EEQFLFLLQQ 720
           E+ F+ LL++
Sbjct: 209 EDGFIELLRR 218


>gi|410218|gb|AAA16121.1| replication factor C large subunit [Homo sapiens]
          Length = 1148

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 472 EDGLLNLIR 480


>gi|555972|gb|AAB60452.1| replication factor C large subunit [Mus musculus]
          Length = 565

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 409 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILD 468

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 469 EDGLLDLIR 477


>gi|32528306|ref|NP_002904.3| replication factor C subunit 1 isoform 1 [Homo sapiens]
 gi|30354564|gb|AAH51751.1| Replication factor C (activator 1) 1, 145kDa [Homo sapiens]
 gi|46430941|gb|AAS94325.1| replication factor C (activator 1) 1, 145kDa [Homo sapiens]
 gi|119613330|gb|EAW92924.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_c [Homo
           sapiens]
 gi|168275744|dbj|BAG10592.1| replication factor C subunit 1 [synthetic construct]
          Length = 1147

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 472 EDGLLNLIR 480


>gi|325296984|ref|NP_001191676.1| replication factor C subunit 1 isoform 2 [Homo sapiens]
 gi|56757608|sp|P35251|RFC1_HUMAN RecName: Full=Replication factor C subunit 1; AltName:
           Full=Activator 1 140 kDa subunit; Short=A1 140 kDa
           subunit; AltName: Full=Activator 1 large subunit;
           AltName: Full=Activator 1 subunit 1; AltName:
           Full=DNA-binding protein PO-GA; AltName:
           Full=Replication factor C 140 kDa subunit; Short=RF-C
           140 kDa subunit; Short=RFC140; AltName: Full=Replication
           factor C large subunit
 gi|52632416|gb|AAH35297.1| Replication factor C (activator 1) 1, 145kDa [Homo sapiens]
 gi|119613329|gb|EAW92923.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_b [Homo
           sapiens]
 gi|158256656|dbj|BAF84301.1| unnamed protein product [Homo sapiens]
          Length = 1148

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 472 EDGLLNLIR 480


>gi|114593614|ref|XP_001140603.1| PREDICTED: replication factor C large subunit isoform 2 [Pan
           troglodytes]
          Length = 1031

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 296 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 355

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 356 EDGLLNLIR 364


>gi|30353858|gb|AAH51786.1| RFC1 protein [Homo sapiens]
 gi|167774195|gb|ABZ92532.1| replication factor C (activator 1) 1, 145kDa [synthetic construct]
          Length = 1148

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 472 EDGLLNLIR 480


>gi|114593610|ref|XP_001140519.1| PREDICTED: replication factor C large subunit isoform 1 [Pan
           troglodytes]
          Length = 1119

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 384 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 443

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 444 EDGLLNLIR 452


>gi|114593608|ref|XP_001140765.1| PREDICTED: replication factor C subunit 1 isoform 4 [Pan
           troglodytes]
          Length = 1148

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 472 EDGLLNLIR 480


>gi|326919292|ref|XP_003205915.1| PREDICTED: replication factor C subunit 1-like [Meleagris
           gallopavo]
          Length = 1212

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK EKA  LG
Sbjct: 469 LEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASALG 528

Query: 706 VKIMNEEQFLFLLQ 719
            KI++E+    L++
Sbjct: 529 TKIIDEDGLFDLVR 542


>gi|119613328|gb|EAW92922.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_a [Homo
           sapiens]
          Length = 1032

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 296 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 355

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 356 EDGLLNLIR 364


>gi|114593612|ref|XP_001140686.1| PREDICTED: replication factor C large subunit isoform 3 [Pan
           troglodytes]
          Length = 978

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 472 EDGLLNLIR 480


>gi|296908|emb|CAA80355.1| PO-GA [Homo sapiens]
 gi|2827257|gb|AAB99788.1| DNA binding protein [Homo sapiens]
          Length = 1147

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 472 EDGLLNLIR 480


>gi|256071069|ref|XP_002571864.1| chromosome transmission fidelity factor [Schistosoma mansoni]
 gi|238657012|emb|CAZ28094.1| chromosome transmission fidelity factor, putative [Schistosoma
           mansoni]
          Length = 1015

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            + TG L+ I+R  A   +   G  V   L +KTD ++VG  PG +K+EKA  L +K + 
Sbjct: 216 FLITGILECIEREDAANLIQNCGGKVLKTLGKKTDYLVVGREPGAAKIEKANNLKIKQIT 275

Query: 711 EEQFLFLLQQYNTTLRIH 728
           EE    ++++ +    +H
Sbjct: 276 EEYLFEMIEKSSNVPLVH 293


>gi|332218978|ref|XP_003258636.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1-like
           [Nomascus leucogenys]
          Length = 1148

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 472 EDGLLNLIR 480


>gi|114593616|ref|XP_517154.2| PREDICTED: replication factor C large subunit isoform 5 [Pan
           troglodytes]
          Length = 1123

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 472 EDGLLNLIR 480


>gi|109074009|ref|XP_001091287.1| PREDICTED: replication factor C subunit 1 isoform 3 [Macaca
           mulatta]
          Length = 1148

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 472 EDGLLNLIR 480


>gi|4103934|gb|AAD01890.1| replication factor C [Rattus norvegicus]
          Length = 1104

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKT 442

Query: 686 DIIIVG-DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +++G D+  SK +KA  LG KI++E+  L L++
Sbjct: 443 SYLVMGRDSRQSKSDKAAALGTKILDEDGLLDLIR 477


>gi|194209224|ref|XP_001495351.2| PREDICTED: replication factor C (activator 1) 1, 145kDa [Equus
           caballus]
          Length = 1176

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 440 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 499

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 500 EDGLLNLIR 508


>gi|296237052|ref|XP_002763589.1| PREDICTED: replication factor C subunit 1, partial [Callithrix
           jacchus]
          Length = 827

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 417 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 476

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 477 EDGLLNLIR 485


>gi|3342382|gb|AAC40192.1| VIP-receptor-gene repressor protein [Rattus norvegicus]
          Length = 656

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT  +++G + G SK +KA  LG KI++
Sbjct: 407 FVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQSKSDKAAALGTKILD 466

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 467 EDGLLDLIR 475


>gi|311262015|ref|XP_003128976.1| PREDICTED: replication factor C subunit 1-like [Sus scrofa]
          Length = 1039

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 309 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 368

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK  KA  LG KI++E+  L L++
Sbjct: 369 NYLVMGRDSGQSKSGKAAALGTKIIDEDGLLNLIR 403


>gi|1399917|gb|AAC60361.1| replication factor C large subunit [Anas platyrhynchos]
          Length = 1145

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK EKA  LG
Sbjct: 402 LEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASALG 461

Query: 706 VKIMNEEQFLFLLQ 719
            KI++E+    L++
Sbjct: 462 TKIIDEDGLFDLVR 475


>gi|57530056|ref|NP_001006456.1| replication factor C subunit 1 [Gallus gallus]
 gi|53130644|emb|CAG31651.1| hypothetical protein RCJMB04_9c6 [Gallus gallus]
          Length = 1147

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK EKA  LG
Sbjct: 404 LEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLG 463

Query: 706 VKIMNEEQFLFLLQ 719
            KI++E+    L++
Sbjct: 464 TKIIDEDGLFDLVR 477


>gi|196009297|ref|XP_002114514.1| hypothetical protein TRIADDRAFT_27705 [Trichoplax adhaerens]
 gi|190583533|gb|EDV23604.1| hypothetical protein TRIADDRAFT_27705 [Trichoplax adhaerens]
          Length = 716

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVV--SAILSRKTDIIIVGDNPG-SKLEKAQQLGVKI 708
            V TG L  I+R  A E +  LG  V  S  +S+KT+ ++VG +PG +KLEKA+    K 
Sbjct: 11  FVITGVLDTIERETAIELIQSLGGKVNVSGSISKKTNYLVVGRDPGLTKLEKAKNFSTKQ 70

Query: 709 MNEEQFLFLL 718
           ++E  F  L+
Sbjct: 71  LDENSFYDLI 80


>gi|50547051|ref|XP_500995.1| YALI0B16918p [Yarrowia lipolytica]
 gi|49646861|emb|CAG83248.1| YALI0B16918p [Yarrowia lipolytica]
          Length = 952

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTGT+  + R + Q  V + G  V++ +S KT+ +++G++ G  K+E+ ++L  K ++
Sbjct: 260 FVFTGTMPNLSREEGQAAVKKYGGKVTSSISGKTNCVVLGEDAGPKKIEQIKKLRTKALD 319

Query: 711 EEQFLFLLQ 719
           E  FL LL+
Sbjct: 320 EAGFLELLR 328


>gi|46105398|ref|XP_380503.1| hypothetical protein FG00327.1 [Gibberella zeae PH-1]
          Length = 1049

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG LQ I R   Q  V + G  V    S KT  +++GD+ G SKL K Q L +K ++
Sbjct: 327 FVFTGVLQTISRDDGQALVKRYGGKVVGQPSSKTSFVVLGDDAGPSKLAKIQSLSIKTID 386

Query: 711 EEQFLFLLQQ 720
           E     L+++
Sbjct: 387 ENGLFDLIRK 396


>gi|189426842|ref|YP_001949941.1| NAD-dependent DNA ligase [Ralstonia phage RSL1]
 gi|189233154|dbj|BAG41511.1| NAD-dependent DNA ligase [Ralstonia phage RSL1]
          Length = 625

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 133/313 (42%), Gaps = 47/313 (15%)

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           + +  K+DGT + + Y  G+      RGDG  G+D+S  +      P ++ +  IP+ I+
Sbjct: 97  WNVSHKLDGTSLQLAYRGGRPWKLITRGDGALGKDISFFL------PHLVKIGMIPDHIK 150

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYA----NPRNAASGILRR--LNPTDITRYLNFF- 239
               V + + + +      +AV  K +A    N R  A+G+  R  ++P     ++    
Sbjct: 151 TDALVVVFRCEGIM----PVAVFEKKWAGKYDNARQLANGVFNRQDMHPALADVHMVVLS 206

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           V+G+ +   I +AK Q   +   R L      G   A     +++   E  SI     Y+
Sbjct: 207 VYGMKQGEGIMYAKRQGFHVVPTRML-----KGRLDAEVLTRLLNKEREA-SI-----YE 255

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKF--AEKQASTRLLDIDIQIGRTGILTPVA 356
           +DGL+       +     +R   P+ + + KF   E  A   +  +  Q  R     P  
Sbjct: 256 MDGLILVPSPRIMSYTSPDR---PKDITAFKFNDEENAAEVPVESVVWQKTRLHRWQPKI 312

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            ++P  + G ++TN T HN  ++K            R I  G  V V R+G VIPK+V +
Sbjct: 313 TIKPTFMDGVMVTNVTAHNPAWMK-----------ERGIGPGAIVKVLRSGGVIPKIVGV 361

Query: 417 IVNER-HPDAQPF 428
           +   +  P   P+
Sbjct: 362 VKKGKFQPPPGPY 374


>gi|1335208|emb|CAA49475.1| LLDBP [Homo sapiens]
          Length = 521

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG KI++
Sbjct: 301 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 360

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 361 EDGLLNLIR 369


>gi|238574191|ref|XP_002387514.1| hypothetical protein MPER_13721 [Moniliophthora perniciosa FA553]
 gi|215443056|gb|EEB88444.1| hypothetical protein MPER_13721 [Moniliophthora perniciosa FA553]
          Length = 108

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L    R +A +   + G  V    S KTD +I+GDN G SKL   ++ G+  +N
Sbjct: 5   FVFTGELSAFSREEAVDIAKRFGGRVVGQPSSKTDYVILGDNAGPSKLNAIKKHGLHTLN 64

Query: 711 EEQFLFLL 718
           E++FL L+
Sbjct: 65  EDEFLNLI 72


>gi|71027899|ref|XP_763593.1| replication factor C large subunit [Theileria parva strain Muguga]
 gi|68350546|gb|EAN31310.1| replication factor C large subunit, putative [Theileria parva]
          Length = 1084

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 15/90 (16%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPG 695
           +S IE KK VFTG +  I R +A   V +LG +V + +S  TD ++ GD          G
Sbjct: 372 TSRIEGKKFVFTGEMG-IDRLEATLRVKKLGGIVVSAVSGVTDYLVYGDRLEDGRPYQSG 430

Query: 696 SKLEKAQQLG------VKIMNEEQFLFLLQ 719
            K +KA +L       ++++NEEQFL LLQ
Sbjct: 431 LKYKKAIELNNKKKRNIQLLNEEQFLQLLQ 460


>gi|254583820|ref|XP_002497478.1| ZYRO0F06446p [Zygosaccharomyces rouxii]
 gi|238940371|emb|CAR28545.1| ZYRO0F06446p [Zygosaccharomyces rouxii]
          Length = 841

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           LVFTGTL  I+R  A+    + GA ++  +S KT  +++G+  G  K++  ++LG+K ++
Sbjct: 142 LVFTGTLPNIERGVAESIAKRYGARITKSISSKTSAVVLGEEAGPKKVDTIKKLGIKAID 201

Query: 711 EEQFLFLL 718
           EE F  L+
Sbjct: 202 EEGFKQLI 209


>gi|296122435|ref|YP_003630213.1| hypothetical protein Plim_2188 [Planctomyces limnophilus DSM 3776]
 gi|296014775|gb|ADG68014.1| Tetratricopeptide TPR_2 repeat protein [Planctomyces limnophilus
           DSM 3776]
          Length = 442

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 14/90 (15%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NP 694
           ++ ++ +++ FTGTL  +   +A  YV Q G   +  +S++T +++VGD          P
Sbjct: 20  TAPLQGERVTFTGTLASMTHREAAGYVEQFGGTFTTQVSQQTTLLVVGDEGWPLEEDGQP 79

Query: 695 GSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
             KLE A++L      +KI++E ++L L++
Sbjct: 80  SLKLEAARELLERGFPIKILSEPEWLQLIE 109


>gi|224050004|ref|XP_002189560.1| PREDICTED: replication factor C (activator 1) 1, 145kDa
           [Taeniopygia guttata]
          Length = 1142

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK EKA  LG
Sbjct: 397 LEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLG 456

Query: 706 VKIMNEEQFLFLLQ 719
            KI++E+    L++
Sbjct: 457 TKIIDEDGLFDLIR 470


>gi|126331819|ref|XP_001374096.1| PREDICTED: similar to Replication factor C (activator 1) 1, 145kDa
           [Monodelphis domestica]
          Length = 1347

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 517 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 576

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             +++G + G SK +KA  LG KI++E+  L L++
Sbjct: 577 SYLVMGRDSGQSKSDKALALGTKIIDEDGLLDLIR 611


>gi|307690045|ref|ZP_07632491.1| BRCT domain-containing protein [Clostridium cellulovorans 743B]
          Length = 200

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E + + FTG      R+  QE   + GA +S  ++ KT +++VG N GSKL+KA + G+
Sbjct: 121 LEGEVVCFTGQ-SDYPRNTMQEIAMKNGAEISNSITLKTTMLVVGLNSGSKLDKAHEKGI 179

Query: 707 KIMNEEQFLFLLQ 719
            I+++ +F+ +L 
Sbjct: 180 SIIDDTEFMKMLH 192


>gi|226286728|gb|EEH42241.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb18]
          Length = 1066

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V+   S KT  +++GD+ G  KLE  ++ G+K +N
Sbjct: 333 FVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETIKKFGLKTIN 392

Query: 711 EEQFLFLLQQ 720
           EE    L+++
Sbjct: 393 EEGLFELIRR 402


>gi|291385663|ref|XP_002709319.1| PREDICTED: germ line transcription factor 1-like [Oryctolagus
           cuniculus]
          Length = 1152

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 409 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKT 468

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK +KA  LG  I++E+  L L++
Sbjct: 469 NYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIR 503


>gi|225684712|gb|EEH22996.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb03]
          Length = 1066

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V+   S KT  +++GD+ G  KLE  ++ G+K +N
Sbjct: 333 FVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETIKKFGLKTIN 392

Query: 711 EEQFLFLLQQ 720
           EE    L+++
Sbjct: 393 EEGLFELIRR 402


>gi|295674213|ref|XP_002797652.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb01]
 gi|226280302|gb|EEH35868.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb01]
          Length = 1066

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V+   S KT  +++GD+ G  KLE  ++ G+K +N
Sbjct: 333 FVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETIKKFGLKTIN 392

Query: 711 EEQFLFLLQQ 720
           EE    L+++
Sbjct: 393 EEGLFELIRR 402


>gi|302873722|ref|YP_003842355.1| BRCT domain-containing protein [Clostridium cellulovorans 743B]
 gi|302576579|gb|ADL50591.1| BRCT domain protein [Clostridium cellulovorans 743B]
          Length = 271

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E + + FTG      R+  QE   + GA +S  ++ KT +++VG N GSKL+KA + G+
Sbjct: 192 LEGEVVCFTGQ-SDYPRNTMQEIAMKNGAEISNSITLKTTMLVVGLNSGSKLDKAHEKGI 250

Query: 707 KIMNEEQFLFLLQ 719
            I+++ +F+ +L 
Sbjct: 251 SIIDDTEFMKMLH 263


>gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018]
          Length = 301

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 14/84 (16%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------PGSKLE 699
           N+ +VFTG L+K+ R  AQ+ V  LG V+   ++++T+ +I+GDN           SK +
Sbjct: 216 NRHVVFTGKLEKMLRKDAQQIVVNLGGVLDNSVTKQTNYLILGDNDYNAILKGDKSSKHK 275

Query: 700 KAQQL-----GVKIMNEEQFLFLL 718
           KA++L      ++I++E  F  LL
Sbjct: 276 KAEKLKIEGQDIEIIDEHTFYDLL 299


>gi|118118702|ref|XP_001236329.1| PREDICTED: hypothetical protein, partial [Gallus gallus]
          Length = 255

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK EKA  LG KI++
Sbjct: 171 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLGTKIID 230

Query: 711 EEQFLFLLQ 719
           E+    L++
Sbjct: 231 EDGLFDLVR 239


>gi|281342306|gb|EFB17890.1| hypothetical protein PANDA_014667 [Ailuropoda melanoleuca]
          Length = 1119

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 384 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 443

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK +KA  LG  I++E+  L L++
Sbjct: 444 NYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIR 478


>gi|330921995|ref|XP_003299650.1| hypothetical protein PTT_10692 [Pyrenophora teres f. teres 0-1]
 gi|311326573|gb|EFQ92247.1| hypothetical protein PTT_10692 [Pyrenophora teres f. teres 0-1]
          Length = 1085

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG LQK  R ++QE V + G  V+   S+KT  +++G + G SKL K + + +K ++
Sbjct: 360 FVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTSYVVLGSDAGYSKLAKIRDMNIKTID 419

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 420 EDGLTQLIEK 429


>gi|238764312|ref|ZP_04625263.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
 gi|238697463|gb|EEP90229.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
          Length = 318

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 14/154 (9%)

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           +GFP+     ++      V+++ ++      LP+  DG+V + D+    +     A    
Sbjct: 1   MGFPLTAYYSESVFSGSDVAHWRKL-WFEMPLPFVTDGVVIRQDDEPAGRYW--HATPGN 57

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W ++ K+   Q  T + DI   +GRTG +T + ++ PV I           ++ +I+ ++
Sbjct: 58  WSVAWKYPPPQQITEIKDIHFTVGRTGKVTAILQVVPVKI-----------DDKWIRRVN 106

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
                     DI  GD+V +  AG  IP++ +++
Sbjct: 107 VGSIARWKQWDIVPGDQVTITLAGLGIPRLDNVV 140


>gi|189200012|ref|XP_001936343.1| replication factor C subunit 1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983442|gb|EDU48930.1| replication factor C subunit 1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1096

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG LQK  R ++QE V + G  V+   S+KT  +++G + G SKL K + + +K ++
Sbjct: 358 FVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTSYVVLGSDAGPSKLAKIRDMNIKTID 417

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 418 EDGLTQLIEK 427


>gi|73951876|ref|XP_536259.2| PREDICTED: similar to replication factor C large subunit [Canis
           familiaris]
          Length = 1145

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 442

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK +KA  LG  I++E+  L L++
Sbjct: 443 NYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIR 477


>gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
 gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
          Length = 307

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 14/84 (16%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------PGSKLE 699
           N+ +VFTG L+K+ R  AQ+ V  LG V+   ++++T+ +I+GDN           SK +
Sbjct: 222 NRHVVFTGKLEKMLRKDAQQIVVNLGGVLDNSVTKQTNYLILGDNDYNAILKGDKSSKHK 281

Query: 700 KAQQL-----GVKIMNEEQFLFLL 718
           KA++L      ++I++E  F  LL
Sbjct: 282 KAEKLKIEGQDIEIIDEHTFYDLL 305


>gi|213402719|ref|XP_002172132.1| replication factor C subunit 1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000179|gb|EEB05839.1| replication factor C subunit 1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 930

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710
            V TG L+ + R +A + + Q G  V+   S KTD +++GDN G  K+E  +   ++ ++
Sbjct: 223 FVITGILETLTRQEAGDLIKQYGGKVTGAPSTKTDFVVLGDNAGPRKVETIKTHNIRAID 282

Query: 711 EEQFLFLLQQ 720
           E+  LFL+  
Sbjct: 283 EDGLLFLISH 292


>gi|301779603|ref|XP_002925218.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1-like
           [Ailuropoda melanoleuca]
          Length = 1146

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E  K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT
Sbjct: 385 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 444

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +++G + G SK +KA  LG  I++E+  L L++
Sbjct: 445 NYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIR 479


>gi|164658055|ref|XP_001730153.1| hypothetical protein MGL_2535 [Malassezia globosa CBS 7966]
 gi|159104048|gb|EDP42939.1| hypothetical protein MGL_2535 [Malassezia globosa CBS 7966]
          Length = 850

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710
           LVFTG L  I R  A +   + GA V+   S KT  +++GD  G+ KLE  Q+  +K ++
Sbjct: 164 LVFTGELSSISREDAIDLAKRYGAKVTTAPSSKTSYVVLGDGAGAKKLETIQKNKLKTVD 223

Query: 711 EEQFLFLLQQ 720
           E+ FL L+ +
Sbjct: 224 EDGFLALIAE 233


>gi|321469644|gb|EFX80623.1| hypothetical protein DAPPUDRAFT_318220 [Daphnia pulex]
          Length = 1045

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +V TG L+ + R +A+  V + G      +S+ T  ++ GD+ G SKL KA+ L V +++
Sbjct: 306 IVVTGVLESLHREEAEGLVKKYGGKAPKAVSKNTSYLLAGDDAGPSKLSKAKDLNVPMLS 365

Query: 711 EEQFLFLL 718
           E+ FL L+
Sbjct: 366 EDDFLKLI 373


>gi|168050549|ref|XP_001777721.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670941|gb|EDQ57501.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 850

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 630 KEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           +E  P  G  E  +     + N   V +GTL  ++R +A+  +   G  V+  +S+KTD 
Sbjct: 133 REAPPHKGEKEVPQGADDALANLTFVISGTLDSLEREEAEHLIKSHGGRVTGSVSKKTDY 192

Query: 688 IIVGDN-PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++  ++  G K +KA++LGVK + E+    ++++
Sbjct: 193 LLADEDIGGRKSQKAKELGVKFITEDGLFEMIRK 226


>gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 302

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 14/84 (16%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700
           K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G        +N  S KLEK
Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLNKLKENEKSIKLEK 278

Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719
           A+ L      +KI+NEE+FL +++
Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302


>gi|297467831|ref|XP_002705355.1| PREDICTED: germ line transcription factor 1-like, partial [Bos
           taurus]
          Length = 183

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG
Sbjct: 6   LEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALG 65

Query: 706 VKIMNEEQFLFLLQ 719
             I++E+  L L++
Sbjct: 66  TNIIDEDGLLNLIR 79


>gi|302923420|ref|XP_003053672.1| hypothetical protein NECHADRAFT_30719 [Nectria haematococca mpVI
           77-13-4]
 gi|256734613|gb|EEU47959.1| hypothetical protein NECHADRAFT_30719 [Nectria haematococca mpVI
           77-13-4]
          Length = 1042

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG LQ I R + Q  V + G  V    S KT  +++GD+ G SKL K +  G+K ++
Sbjct: 320 FVFTGVLQTIGRDEGQALVKRYGGKVVGQPSSKTSFVVLGDDAGPSKLAKIKSHGIKTID 379

Query: 711 EEQFLFLLQQ 720
           E     L+++
Sbjct: 380 ENGLFDLIRK 389


>gi|1816524|gb|AAB42062.1| DNA ligase [Escherichia coli]
          Length = 90

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE 105
           P  ++G     +  ++ H +P LSL+ +++ E
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEE 89


>gi|170724912|ref|YP_001758938.1| BRCT domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169810259|gb|ACA84843.1| BRCT domain protein [Shewanella woodyi ATCC 51908]
          Length = 209

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKL 698
           +N   E E++ +V TG  +  + R +  E +  LGA + + +S+KT +++ G   G SKL
Sbjct: 127 ENPVIEWEDQNIVLTGKFENYESRDELAEELEDLGANIRSSISKKTTLLVTGLRVGPSKL 186

Query: 699 EKAQQLGVKIMNEEQFL 715
           EKA+ LGV+I+ E + +
Sbjct: 187 EKAKSLGVRIITENELM 203


>gi|320179984|gb|EFW54926.1| DNA ligase , LigB [Shigella boydii ATCC 9905]
 gi|332084828|gb|EGI90011.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           boydii 5216-82]
          Length = 355

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 74/375 (19%), Positives = 134/375 (35%), Gaps = 71/375 (18%)

Query: 224 LRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIV 282
           + R   +D    L  FV       ++      + L+++   GF +     R       + 
Sbjct: 1   MMRQGNSDTLNSLAVFVWAWPDGPQLMT----DRLKELATAGFTLTQTYTRAVKNADEVA 56

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRL 339
              NE    R  LP+  DG+V +       K+   R   P    W+++ K+        +
Sbjct: 57  HVRNEWWKAR--LPFVTDGVVVRA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEV 109

Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVG 398
             I   +G++G ++ VA L PV +    +    +            G V R    DI  G
Sbjct: 110 KAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNI------------GSVRRWQEWDIAPG 157

Query: 399 DRVLVKRAGEVIPKVVDIIVN--ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAA 455
           D++LV  AG+ IP++ D++    ER     P + F S      S V              
Sbjct: 158 DQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDV-------------- 203

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTL 513
                   C  Q + RL    S+    ++G+G+       ++   +  FS  +       
Sbjct: 204 --------CQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------- 248

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI----RHVGAEIARS 569
                 +  +++N  G        L+   N  R     R++ ++GI      + A   RS
Sbjct: 249 -----LTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERS 303

Query: 570 LAKYYLSYQNFAQEI 584
            ++   S + F Q++
Sbjct: 304 WSQLLFSTEQFWQQL 318


>gi|224011579|ref|XP_002295564.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583595|gb|ACI64281.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 649

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 9/81 (11%)

Query: 647 IENKKLVFTGTLQKIQ--------RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SK 697
           +  K++V TGT  ++         + + +E +   G  V+  +S KTD +IVG +PG SK
Sbjct: 536 LNGKRVVLTGTFPEVGGGTGLNAGKDRMKEMIESFGGKVTGSVSGKTDYLIVGRDPGASK 595

Query: 698 LEKAQQLGVKIMNEEQFLFLL 718
           + KA Q G+ +MN  Q   LL
Sbjct: 596 VGKAHQRGLPLMNILQLQHLL 616


>gi|300939286|ref|ZP_07153960.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 21-1]
 gi|300455793|gb|EFK19286.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 21-1]
          Length = 329

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 128/345 (37%), Gaps = 75/345 (21%)

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFSLQ 312
           L+++   GF +        T+   V   +E+  +R     + LP+  DG+V +       
Sbjct: 5   LKELATAGFTLTQ------TYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRAA----- 53

Query: 313 KQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           K+   R   P    W+++ K+        +  I   +G++G ++ VA L PV +    + 
Sbjct: 54  KEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQ 113

Query: 370 NATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQ 426
              +            G V R    DI  GD++LV  AG+ IP++ D++    ER     
Sbjct: 114 RVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTP 161

Query: 427 PFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           P + F S      S V                      C  Q + RL    S+    ++G
Sbjct: 162 PENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLDG 199

Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+       ++   +  FS  +             +  +++N  G        L+   N
Sbjct: 200 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 247

Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584
             R     R++ ++GI      + A   RS ++   S + F Q++
Sbjct: 248 LARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 292


>gi|213421635|ref|ZP_03354701.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 325

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 123/333 (36%), Gaps = 61/333 (18%)

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
           + S LP+  DG+V ++ +    +    R     W+ + K+       ++  I   +G++G
Sbjct: 33  LTSALPFVTDGVVIRMAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSG 90

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEV 409
            +T VA L PV +    +    +            G V R    DI  GD++LV  AG+ 
Sbjct: 91  KITVVASLVPVILDDKRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQG 138

Query: 410 IPKVVDIIV--NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           IP++ +++    ER     P S                N  T    +A        C  Q
Sbjct: 139 IPRLDEVVWRSRERSKPVPPGS--------------HFNSLTCFYASA-------TCQEQ 177

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
            + RL    SR A  ++G+G+       ++    F       IF+       ++ +I N 
Sbjct: 178 FISRLVWLGSRSALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANT 227

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            G        ++   N  R  S  R+I ++ I    A +  S  + +            +
Sbjct: 228 PGVAKGKSEQIWRQFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQL 277

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           +      W  L   P  G+  A  ++++  NP+
Sbjct: 278 LMRTEQHWRQL---PATGERRAGRVIDWRNNPQ 307


>gi|253742407|gb|EES99241.1| Replication factor C, subunit 1 [Giardia intestinalis ATCC 50581]
          Length = 886

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 651 KLVF--TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
           KL+F  TG L+ +     + Y+  LG  V+  +S KT  +IVGD+PG +KL  A+   V+
Sbjct: 177 KLIFVRTGNLRTMSDTDMKLYIANLGGTVTTSVSGKTSYLIVGDDPGATKLRDAKAKFVR 236

Query: 708 IMNEEQFLFLL 718
           I++E++F  L+
Sbjct: 237 IISEKEFYDLI 247


>gi|308160758|gb|EFO63231.1| Replication factor C, subunit 1 [Giardia lamblia P15]
          Length = 887

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 28/159 (17%)

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A  +L     A E  N IAH        I  PL+ +  A  I      P N    E   +
Sbjct: 108 ADIFLDVFQSAAESLNPIAH--------IERPLIDEPFANLI------PAN---TEQNKR 150

Query: 631 EVSPSIGRHEKNVSSEI--------ENKKLVF--TGTLQKIQRHKAQEYVTQLGAVVSAI 680
           E +P   R   +V+ E            KL+F  TG L+ +     + YVT LG  V+  
Sbjct: 151 EANPYNSRTNASVNYETLRPRGLVSSLSKLIFVRTGNLRTMSDTDFKLYVTNLGGTVTTA 210

Query: 681 LSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +S +T  ++VGD+PG +K+  A+   V+I++E++F  L+
Sbjct: 211 VSGRTSYLVVGDDPGATKIRDAKAKFVRIISEKEFYNLV 249


>gi|332084531|gb|EGI89726.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           dysenteriae 155-74]
          Length = 355

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 74/373 (19%), Positives = 134/373 (35%), Gaps = 67/373 (17%)

Query: 224 LRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIV 282
           + R   +D    L  FV       ++      + L+++   GF +     R       + 
Sbjct: 1   MMRQGNSDTLNSLAVFVWAWPDGPQLMT----DRLKELATAGFTLTQTYTRAVKNADEVA 56

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKV-DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
              NE    R  LP+  DG+V +   E      L  +A    W+++ K+        +  
Sbjct: 57  HVRNEWWKAR--LPFVTDGVVVRAAKEPESHHWLPGQAE---WLVAWKYQPVAQVAEVKA 111

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDR 400
           I   +G++G ++ VA L PV +    +    +            G V R    DI  GD+
Sbjct: 112 IQFAVGKSGKISVVASLAPVMLDDKKVQRVNI------------GSVRRWQEWDIAPGDQ 159

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHR 457
           +LV  AG+ IP++ D++    ER     P + F S      S V                
Sbjct: 160 ILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDV---------------- 203

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQR 515
                 C  Q + RL    S+    ++G+G+       ++   +  FS  +         
Sbjct: 204 ------CQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLL--------- 248

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLA 571
               +  +++N  G        L+   N  R     R++ ++GI      + A   RS +
Sbjct: 249 ---LTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWS 305

Query: 572 KYYLSYQNFAQEI 584
           +   S + F Q++
Sbjct: 306 QLLFSTEQFWQQL 318


>gi|149640658|ref|XP_001512744.1| PREDICTED: similar to Replication factor C (activator 1) 1, 145kDa
           [Ornithorhynchus anatinus]
          Length = 1233

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG L+ I+R +A+  + + G  V+  +S++T  +++G + G SK +KA  LG
Sbjct: 490 LEGLTFVITGVLESIERDEAKCLIERHGGKVTGNVSKRTSYLVMGRDSGQSKSDKASALG 549

Query: 706 VKIMNEEQFLFLLQ 719
            KI++E+  L L++
Sbjct: 550 TKIIDEDGLLNLIR 563


>gi|241111852|ref|XP_002399407.1| replication factor C large subunit, putative [Ixodes scapularis]
 gi|215492969|gb|EEC02610.1| replication factor C large subunit, putative [Ixodes scapularis]
          Length = 706

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           LV TG L+ I+R   +  + + GA V+  +SR T  ++ G + G +KL KA++  VKI++
Sbjct: 11  LVITGVLECIERDDTRALLERCGAKVTQSVSRNTTYLVAGRDSGPAKLRKAEECKVKILD 70

Query: 711 EEQFLFLLQ 719
           E+ F  L++
Sbjct: 71  EDGFFELIE 79


>gi|169830139|ref|YP_001700297.1| DNA polymerase III [Lysinibacillus sphaericus C3-41]
 gi|168994627|gb|ACA42167.1| DNA polymerase III [Lysinibacillus sphaericus C3-41]
          Length = 126

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 8/78 (10%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---GSKLEKAQQL- 704
           +K++VFTG L K+ R +A ++V   G  +   ++++TD II+GD      +K  KA+QL 
Sbjct: 41  HKQIVFTGALSKMTRSEAAKHVKACGGFLQGTVTQQTDFIILGDKRRGISTKQRKAEQLI 100

Query: 705 ----GVKIMNEEQFLFLL 718
                ++I+ E  FL+++
Sbjct: 101 NLGQDIQILIESDFLWII 118


>gi|39942248|ref|XP_360661.1| hypothetical protein MGG_03204 [Magnaporthe oryzae 70-15]
 gi|145015808|gb|EDK00298.1| hypothetical protein MGG_03204 [Magnaporthe oryzae 70-15]
          Length = 1084

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 5/78 (6%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L+ I R +AQ  V + G  V+   S KT  +++GD+ G SKL K +Q  +K ++
Sbjct: 349 FVFTGLLKTIGREEAQALVKRYGGKVTGAPSGKTSFVVLGDDAGPSKLAKIKQHRLKTID 408

Query: 711 EEQFLFLLQQYNTTLRIH 728
           E     L+    +TL  H
Sbjct: 409 EVGLFHLI----STLPAH 422


>gi|159477641|ref|XP_001696917.1| DNA replication factor C complex subunit 1 [Chlamydomonas
           reinhardtii]
 gi|158274829|gb|EDP00609.1| DNA replication factor C complex subunit 1 [Chlamydomonas
           reinhardtii]
          Length = 1182

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  K  V +G L  + R +A +Y+ + G  V+  +S KT  ++VG + G SK  KA++ G
Sbjct: 390 LTGKTFVISGVLDSLGREEATDYIKRHGGRVTGAVSGKTSFLVVGHHTGRSKYRKAREHG 449

Query: 706 VKIMNEEQFLFLLQ 719
            K+++E+    L++
Sbjct: 450 TKVIDEDGLFSLIR 463


>gi|319411789|emb|CBQ73832.1| related to replication factor C protein [Sporisorium reilianum]
          Length = 954

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           LVFTG L  I R +A +   + GA ++   S KT  +IVG+  G  KLE  ++  ++ ++
Sbjct: 276 LVFTGELTSISRDEATDLAKRYGARITGAPSSKTSYVIVGEGAGPKKLESIKKNKIETLD 335

Query: 711 EEQFLFLLQ 719
           E+ FL L++
Sbjct: 336 EDAFLDLIR 344


>gi|257059000|ref|YP_003136888.1| BRCT domain protein [Cyanothece sp. PCC 8802]
 gi|256589166|gb|ACV00053.1| BRCT domain protein [Cyanothece sp. PCC 8802]
          Length = 569

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 8/116 (6%)

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQKIQRHKA 666
            I E  +  + +   E  + EV+P     E   SS  EN    KK+V  G+L ++ R +A
Sbjct: 454 TIAEVTEEEKVLPQEETTIAEVTPE----ESQESSAKENPLSGKKVVIAGSLSQMTREEA 509

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + Y+ + G  +++ LS KT  I++G+ PG K++KA +LGV  + E QF+ LL+  N
Sbjct: 510 RGYLQKAGGSLTSSLSSKTHYIVIGNAPGDKVKKAHKLGVTQLTETQFMDLLKSAN 565


>gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 302

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 34/204 (16%)

Query: 533 VSVTNLYDSI-NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           V   N Y S+ N +     E   F     H G E AR+ A   L   N  ++        
Sbjct: 116 VMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARACANILL---NICKD-------- 163

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--EN 649
               L +  V  + D +A  I   Y+N       +   K  S ++   EK    EI  + 
Sbjct: 164 ----LDIESVEELSDKLAIRIGAVYENGYKSSGRKGECK-YSSNLRLKEKKKDGEISLKC 218

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700
           K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G        +N  S KL+K
Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLNKLKENEKSIKLKK 278

Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719
           A+ L      +KI+NEE+FL +++
Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302


>gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
          Length = 302

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 34/204 (16%)

Query: 533 VSVTNLYDSI-NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           V   N Y S+ N +     E   F     H G E AR+ A   L   N  ++        
Sbjct: 116 VMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARACANILL---NICKD-------- 163

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--EN 649
               L +  V  + D +A  I   Y+N       +   K  S ++   EK    EI  + 
Sbjct: 164 ----LDIESVEELSDKLAIRIGAVYENGYKSSGRKGECK-YSSNLRLKEKKKDGEISLKC 218

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700
           K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G        +N  S KL+K
Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLNKLKENEKSIKLKK 278

Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719
           A+ L      +KI+NEE+FL +++
Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302


>gi|218245952|ref|YP_002371323.1| BRCT domain-containing protein [Cyanothece sp. PCC 8801]
 gi|218166430|gb|ACK65167.1| BRCT domain protein [Cyanothece sp. PCC 8801]
          Length = 600

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 8/116 (6%)

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQKIQRHKA 666
            I E  +  + +   E  + EV+P     E   SS  EN    KK+V  G+L ++ R +A
Sbjct: 485 TIAEVTEEEKVLPQEETAIAEVTPE----ESQESSAKENPLSGKKVVIAGSLSQMTREEA 540

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + Y+ + G  +++ LS KT  I++G+ PG K++KA +LGV  + E QF+ LL+  N
Sbjct: 541 RGYLQKAGGSLTSSLSSKTHYIVIGNAPGDKVKKAHKLGVTQLTETQFMDLLKSAN 596


>gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str.
           13]
 gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
          Length = 302

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 14/84 (16%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700
           K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G        +N  S KL+K
Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLNKLKENEKSIKLKK 278

Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719
           A+ L      +KI+NEE+FL +++
Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302


>gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC
           13124]
 gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 302

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 34/204 (16%)

Query: 533 VSVTNLYDSI-NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           V   N Y S+ N +     E   F     H G E AR+ A   L   N  ++        
Sbjct: 116 VMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARACANILL---NICKD-------- 163

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--EN 649
               L +  V  + D +A  I   Y+N       +   K  S ++   EK    EI  + 
Sbjct: 164 ----LDIESVEELSDKLAIRIGAVYENGYKSSGRKGECK-YSSNLRLKEKKKEGEISLKC 218

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700
           K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G        +N  S KL+K
Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLNKLKENEKSIKLKK 278

Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719
           A+ L      +KI+NEE+FL +++
Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302


>gi|33861216|ref|NP_892777.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33639948|emb|CAE19118.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 249

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 35/204 (17%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +EPKIDG  I ++Y  G    +  R     G DV+  I  I  IP  L L +  I+++RG
Sbjct: 76  IEPKIDGIAIALQYRDGTLEKSISR----KGIDVTNKIAEIQDIP--LKLPVSGILQIRG 129

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL--NPTDITRYLNFFVHGLGKTS 247
           E++                 R P  + R  ASG +R    +P  I+ +  F +   GK +
Sbjct: 130 ELFTP--------------NRSPNFSQR-IASGFVRAAAGSPEGIS-FCGFQIIN-GKLN 172

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 QYE +Q ++ LGF   + ++  N    +  +  +    +    Y  DG+V K++
Sbjct: 173 ------QYETIQYLKKLGFNTPD-IKSCNYTSQVQVFRKQWLDKKIFTEYPTDGIVVKIN 225

Query: 308 EFSLQKQLGERAR--SPRWMISHK 329
              LQ  + E+++   P W I+ K
Sbjct: 226 SRKLQ-LIREKSKIDYPHWQIAIK 248


>gi|298252856|ref|ZP_06976650.1| NAD-dependent DNA ligase [Gardnerella vaginalis 5-1]
 gi|297533220|gb|EFH72104.1| NAD-dependent DNA ligase [Gardnerella vaginalis 5-1]
          Length = 196

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 14/85 (16%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------PGSKLE 699
           N+ +VFTG L+K+ R  A + V  LG V+   ++++T+ +I+GDN           SK +
Sbjct: 111 NRHVVFTGKLEKMLRKDAMQIVVNLGGVLDNSVTKQTNYLILGDNDYNAILKDEKSSKHK 170

Query: 700 KAQQL-----GVKIMNEEQFLFLLQ 719
           KA++L      ++I++E  F  LL+
Sbjct: 171 KAEKLKLEGQDIEIIDERTFYDLLE 195


>gi|72382264|ref|YP_291619.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           NATL2A]
 gi|72002114|gb|AAZ57916.1| NAD-dependent DNA ligase N-terminus protein [Prochlorococcus
           marinus str. NATL2A]
          Length = 228

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 28/195 (14%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           LEPKI G++I I+Y  G+           + +D++  +R++ TIP+  SL I   +E++G
Sbjct: 57  LEPKIIGSIIGIQYINGELNKVI----NKNSQDITESVRSLKTIPK--SLAIKNRLEIQG 110

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
            +Y  KN                  + R   +  +   N    ++ L F    + + +  
Sbjct: 111 VLYDYKN-----------------LSTRKNETEFIDIQNFISKSKRLKFCAFQICQCN-- 151

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                ++ LQ+++ L F +    +  N    I  Y    +  +    Y  +GLV K++  
Sbjct: 152 --INHFQSLQELKHLNFEIPQ-TQFTNFISDIEIYIQCWREGKLFTSYPTNGLVLKINSR 208

Query: 310 SLQKQLGERARSPRW 324
            LQK LGE   S  W
Sbjct: 209 KLQKYLGENNLSIPW 223


>gi|213972533|ref|NP_001135428.1| germ line transcription factor 1 [Nasonia vitripennis]
          Length = 1100

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           + N   + TG L  ++R +A+E +T+ G  +   +S+K + II+G+  G SKL KA+ L 
Sbjct: 335 LANLSFLITGVLDSLERGEAEELITKYGGRMLHSVSKKLNYIIIGEEAGPSKLAKAESLN 394

Query: 706 VKIMNEEQFLFLLQ 719
           +K ++E+  L L++
Sbjct: 395 IKKISEDGLLELIR 408


>gi|307152927|ref|YP_003888311.1| BRCT domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306983155|gb|ADN15036.1| BRCT domain protein [Cyanothece sp. PCC 7822]
          Length = 753

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 42/69 (60%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           KK V  GTL K+ R + +  + + G  +++  S KTD I+VG  PG+K +KAQ+     +
Sbjct: 678 KKFVIVGTLSKLNRDQVKSIIQEAGGQLTSSPSSKTDYILVGKAPGTKAKKAQKNRAATL 737

Query: 710 NEEQFLFLL 718
           +E QF+ LL
Sbjct: 738 SELQFIELL 746


>gi|320179985|gb|EFW54927.1| DNA ligase , LigB [Shigella boydii ATCC 9905]
          Length = 140

 Score = 45.8 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISK 195
           E+++ +
Sbjct: 125 EIFLKR 130


>gi|213025273|ref|ZP_03339720.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 266

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 109/281 (38%), Gaps = 51/281 (18%)

Query: 215 NPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274
           N R+ A+G+L R +       L  F+         +  G   M +++  L      G   
Sbjct: 19  NARSKAAGMLMRQDNASALNSLGIFIWA-------WPDGPANMPERLSQL---AKAGFSL 68

Query: 275 ANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
              +   V   +E++  R     S LP+  DG+V ++ +    +    R     W+ + K
Sbjct: 69  TKKYSLAVKDASEVERARQSWLTSALPFVTDGVVIRMAKEPASQYW--RPGQGDWLAAWK 126

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           +       ++  I   +G++G +T VA L PV +    +    + +   +K  +A     
Sbjct: 127 YPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIGS---VKRWEA----- 178

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIV--NERHPDAQPFSFPSFCPICQSRVVRDLNP 447
               DI  GD++LV  AG+ IP++ +++    ER     P S                N 
Sbjct: 179 ---WDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPGS--------------HFNS 221

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            T    +A        C  Q + RL    SR A  ++G+G+
Sbjct: 222 LTCFYASA-------TCQEQFISRLVWLGSRSALGLDGMGE 255


>gi|158302275|ref|XP_321857.4| AGAP001290-PA [Anopheles gambiae str. PEST]
 gi|157012871|gb|EAA01207.5| AGAP001290-PA [Anopheles gambiae str. PEST]
          Length = 1016

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
           + V TG L+ ++R +  + +  LG  V   +S+K   ++VGD+ G  K+ +A++LG+  +
Sbjct: 245 QFVITGVLESMERDECAQVIKDLGGKVVGAVSKKCTHMVVGDDAGPKKIAQAEELGIVTL 304

Query: 710 NEEQFLFLLQ 719
           +E++ L L++
Sbjct: 305 SEDELLDLIR 314


>gi|154281839|ref|XP_001541732.1| hypothetical protein HCAG_03830 [Ajellomyces capsulatus NAm1]
 gi|150411911|gb|EDN07299.1| hypothetical protein HCAG_03830 [Ajellomyces capsulatus NAm1]
          Length = 1066

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V++  S KT+ +++G + G  KLE  ++ G+K +N
Sbjct: 334 FVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFGLKSIN 393

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 394 EDGLFELIRR 403


>gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
          Length = 302

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 14/84 (16%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700
           K +VFTG L  + R +A   V + G  VS+ +S+KT+ ++ G        +N  S KL+K
Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLVTGIRDLSELKENEKSIKLKK 278

Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719
           A+ L      +KI+NEE+FL +++
Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302


>gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101]
 gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 302

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 14/84 (16%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700
           K +VFTG L  + R +A   V + G  VS+ +S+KT+ ++ G        +N  S KL+K
Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLVTGIRDLSELKENEKSIKLKK 278

Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719
           A+ L      +KI+NEE+FL +++
Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302


>gi|240275879|gb|EER39392.1| chromosome transmission fidelity factor [Ajellomyces capsulatus
           H143]
          Length = 1071

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V++  S KT+ +++G + G  KLE  ++ G+K +N
Sbjct: 339 FVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFGLKSIN 398

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 399 EDGLFELIRR 408


>gi|325093242|gb|EGC46552.1| chromosome transmission fidelity protein [Ajellomyces capsulatus
           H88]
          Length = 1071

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V++  S KT+ +++G + G  KLE  ++ G+K +N
Sbjct: 339 FVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFGLKSIN 398

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 399 EDGLFELIRR 408


>gi|225563290|gb|EEH11569.1| chromosome transmission fidelity factor [Ajellomyces capsulatus
           G186AR]
          Length = 1071

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V++  S KT+ +++G + G  KLE  ++ G+K +N
Sbjct: 339 FVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFGLKSIN 398

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 399 EDGLFELIRR 408


>gi|149178535|ref|ZP_01857123.1| probable O-linked GlcNAc transferase [Planctomyces maris DSM 8797]
 gi|148842650|gb|EDL57025.1| probable O-linked GlcNAc transferase [Planctomyces maris DSM 8797]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 14/90 (15%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NP 694
           S  ++ +++VFTGTL  +   KA E+V + G   +  +SR+T +++VG+         +P
Sbjct: 16  SPALQGERVVFTGTLASMTHQKAGEFVEEHGGQAAQHVSRQTTLLVVGEEGWPLEADGSP 75

Query: 695 GSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
              L  AQ+L      ++I+ E  +L L++
Sbjct: 76  SVNLTHAQELIAEGVAIQIIKESDWLALIE 105


>gi|312371248|gb|EFR19483.1| hypothetical protein AND_22348 [Anopheles darlingi]
          Length = 1111

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E  + V TG L+ ++R +  + +  LG  V   +S+K   ++VGD+ G  KL +A+ LG
Sbjct: 281 LEGLQFVITGVLESMERDECAQVIKDLGGKVVGAVSKKVTHMVVGDDCGPKKLSQAEDLG 340

Query: 706 VKIMNEEQFLFLLQQ 720
           +  ++E+    L+++
Sbjct: 341 IPTLSEDALFDLIRE 355


>gi|255078488|ref|XP_002502824.1| predicted protein [Micromonas sp. RCC299]
 gi|226518090|gb|ACO64082.1| predicted protein [Micromonas sp. RCC299]
          Length = 917

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E   +V +G L  ++R +A++YV + G  V++ +S KT  ++VG + G SK  KA+Q G
Sbjct: 207 LEGVTVVVSGVLDSLEREEAEDYVKRHGGKVTSTVSGKTTYLLVGMDCGKSKYNKAKQHG 266

Query: 706 VKIMNEEQFLFLL 718
             +++E+    ++
Sbjct: 267 TTLIDEDGLFAMV 279


>gi|124025829|ref|YP_001014945.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           NATL1A]
 gi|123960897|gb|ABM75680.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           NATL1A]
          Length = 228

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 28/195 (14%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           LEPKI G++I I+Y  G+           + +D++  +R++ TIP+  SL I   +E++G
Sbjct: 57  LEPKIIGSIIGIQYINGELNKVI----NKNSQDITESVRSLKTIPK--SLAIKNRLEIQG 110

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
            +Y +KN                  + R   +  +   N    ++ L F    + + +  
Sbjct: 111 VLYDNKN-----------------LSTRKNETEFIDIQNFISKSKRLKFCAFQICQCN-- 151

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                ++ LQ+++ L F +    +  N    I  Y    +  +    Y  +GLV K++  
Sbjct: 152 --INHFQSLQELKHLNFEIPQ-TQFTNFISDIEIYLQCWREGKLFTSYPTNGLVLKINSR 208

Query: 310 SLQKQLGERARSPRW 324
            LQK LG+   S  W
Sbjct: 209 KLQKYLGKNNLSIPW 223


>gi|218441295|ref|YP_002379624.1| BRCT domain protein [Cyanothece sp. PCC 7424]
 gi|218174023|gb|ACK72756.1| BRCT domain protein [Cyanothece sp. PCC 7424]
          Length = 783

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 636 IGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
           I   EK+  S+  I+ KK V  G++ K+ R + +  + + G  V    + KTD I+VG  
Sbjct: 692 IAEPEKDTKSDHPIQGKKFVILGSIAKLSREQIKSIIQEAGGQVINTPNSKTDYIVVGKA 751

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLL 718
           PGSKL+KAQ++    ++E QF+ LL
Sbjct: 752 PGSKLKKAQKIKATNLSEAQFINLL 776


>gi|239610551|gb|EEQ87538.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
           ER-3]
          Length = 1068

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V++  S KT  +++G++ G  KLE  ++ G+K +N
Sbjct: 338 FVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKTSYVVLGNDAGPKKLETIRKFGLKTIN 397

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 398 EDGLFELIRR 407


>gi|327349015|gb|EGE77872.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 1065

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V++  S KT  +++G++ G  KLE  ++ G+K +N
Sbjct: 335 FVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKTSYVVLGNDAGPKKLETIRKFGLKTIN 394

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 395 EDGLFELIRR 404


>gi|261195366|ref|XP_002624087.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
           SLH14081]
 gi|239587959|gb|EEQ70602.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
           SLH14081]
          Length = 1065

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V++  S KT  +++G++ G  KLE  ++ G+K +N
Sbjct: 335 FVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKTSYVVLGNDAGPKKLETIRKFGLKTIN 394

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 395 EDGLFELIRR 404


>gi|309805852|ref|ZP_07699887.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167761|gb|EFO69905.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus
           iners LactinV 03V1-b]
          Length = 109

 Score = 45.1 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
            DP+    ++GG     L KV H  P LS+  ++
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVF 91


>gi|19113399|ref|NP_596607.1| DNA replication factor C complex subunit Rfc1 [Schizosaccharomyces
           pombe 972h-]
 gi|30913227|sp|O60182|RFC1_SCHPO RecName: Full=Replication factor C subunit 1; Short=Replication
           factor C1
 gi|3116125|emb|CAA18875.1| DNA replication factor C complex subunit Rfc1 [Schizosaccharomyces
           pombe]
          Length = 934

 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710
            V TG L+ + R +A + + Q G  V+   S +TD I++G+N G  K+E  +Q  +  +N
Sbjct: 246 FVITGILETLTRQEATDLIKQYGGKVTGAPSVRTDFILLGENAGPRKVETIKQHKIPAIN 305

Query: 711 EEQFLFLL 718
           E+   +L+
Sbjct: 306 EDGLFYLI 313


>gi|27922874|gb|AAO25527.1| DNA ligase [Paramecium aurelia]
          Length = 143

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 50  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 108

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD 231
           E+++ +     +  +M  +      N R   +G++ R + +D
Sbjct: 109 EIFLQREGH--IQQQMGGI------NARAKVAGLMXRQDDSD 142


>gi|159111709|ref|XP_001706085.1| Replication factor C, subunit 1 [Giardia lamblia ATCC 50803]
 gi|157434178|gb|EDO78411.1| Replication factor C, subunit 1 [Giardia lamblia ATCC 50803]
          Length = 890

 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 651 KLVF--TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
           KL+F  TG L+ +     + YV  LG  V+  +S +T  ++VGD+PG +K+  A+   V+
Sbjct: 179 KLIFVRTGNLRTMSDTDFKLYVANLGGTVTTAVSGRTSYLVVGDDPGVTKIRDAKAKFVR 238

Query: 708 IMNEEQFLFLL 718
           I++E++F  L+
Sbjct: 239 IISEKEFYDLV 249


>gi|156065801|ref|XP_001598822.1| hypothetical protein SS1G_00911 [Sclerotinia sclerotiorum 1980]
 gi|154691770|gb|EDN91508.1| hypothetical protein SS1G_00911 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1047

 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  I R +  E V + G  ++   S KT+ +++G + G SKL K ++L +K ++
Sbjct: 312 FVFTGVLNTISRDEGIELVKKYGGKITGAPSSKTNYVVLGSDAGPSKLRKIRELKIKSVD 371

Query: 711 EEQFLFLLQ 719
           EE    +++
Sbjct: 372 EEGLFAIIK 380


>gi|213649438|ref|ZP_03379491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 35

 Score = 44.7 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 27/35 (77%)

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           R  + ++IDG+V KVDE +LQ++LG  +R+PRW I
Sbjct: 1   RHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAI 35


>gi|227894105|ref|ZP_04011910.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047]
 gi|227864083|gb|EEJ71504.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 619 PRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           P+N+    +  LK++     ++++  S+    K +  TGTL    R +  + +  +G   
Sbjct: 77  PKNLKKKSSFTLKDIPGDSTKNDE--SNAFYGKNVSATGTLTNYTRKEIGQIINNIGGKF 134

Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
                + TD +IVG+   P +K +KA++LG+ I++E  FL ++  Y+
Sbjct: 135 QMNPGKSTDYLIVGNLNKPSAKQKKAEKLGIPILSENDFLSMIAGYD 181


>gi|167519801|ref|XP_001744240.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777326|gb|EDQ90943.1| predicted protein [Monosiga brevicollis MX1]
          Length = 613

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           EA  K  S  +   +K  +S  ++  +VFTGT     R + +      G  V   +S  T
Sbjct: 233 EAAPKPKSAKVQPGQKKATS-TKSLTVVFTGTFTGGTRKEIEAQAVAAGHHVVGKVSGNT 291

Query: 686 DIIIVGD--NP-GSKLEKAQQLGVKIMNEEQFLFLL 718
           D+++VG   NP G+K++ AQ  GVK+++E Q+   L
Sbjct: 292 DVLVVGGAKNPQGAKVDDAQAKGVKVLSEPQWAMRL 327


>gi|303283302|ref|XP_003060942.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457293|gb|EEH54592.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 949

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V +G L  ++R +A++++ + G  V++ +S KT  ++VG + G SK  KA+ +G
Sbjct: 224 LEGCTFVVSGVLDSLERDEAEDFIKRHGGKVTSAVSGKTTYLLVGMDCGKSKYAKAKSVG 283

Query: 706 VKIMNEEQFLFLLQ 719
             +M+E+    +++
Sbjct: 284 TPLMDEDGLFAMVE 297


>gi|32396677|gb|AAP49295.1| NAD-dependent DNA ligase [Meiothermus ruber]
          Length = 99

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWN 103
           D+EYD L +   A+  A P+L     P+ P   +G  +  + F  V H     SL   ++
Sbjct: 1   DAEYDRLLQELRALEEAHPELII---PDSPTQTVGSAILETPFTPVPHPTRMYSLGNAFS 57

Query: 104 IEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
            +D+  F   I RF  +++     + LE KIDG  + + YE+G
Sbjct: 58  QDDIADFEASINRFLGREESRE--YVLEYKIDGLSVNLIYEEG 98


>gi|254526714|ref|ZP_05138766.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus
           marinus str. MIT 9202]
 gi|221538138|gb|EEE40591.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus
           marinus str. MIT 9202]
          Length = 249

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            +++PKIDG  I IRY  GKF  A  +    +G DVS+ I+ I  +P  +   I    ++
Sbjct: 74  LSIQPKIDGCAIAIRYINGKFNKAITK----TGFDVSSKIKQIKNVPDCIP--IKRDFQI 127

Query: 188 RGEVYIS 194
           RGE+Y +
Sbjct: 128 RGELYAT 134


>gi|309810273|ref|ZP_07704115.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308435765|gb|EFP59555.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 534

 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 81/201 (40%), Gaps = 25/201 (12%)

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +  RR++ L  +     +   GAE+      + L+    A  +  ++A      L +  +
Sbjct: 121 VAARRHLRLPSYRLPFVLDAYGAEVNDH--HHALADAEAAGRVAVLMAQQ----LGVTSI 174

Query: 602 PL----VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           P+    VG +I     + +    +I         ++      + + S  +  + +VFTG 
Sbjct: 175 PILAESVGTVIGHMSADQFTGSVSIATARGGSAALALPDANPDADPSGYLYGRTVVFTGA 234

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPGSKLEKAQQLG----------- 705
           L  + R  A + V   G   +   ++KT+++++GD NP S   +A   G           
Sbjct: 235 LMSMTRQMAWDAVADAGGQPAPTTTKKTNVLVIGDFNPASLRPRANVSGKAAKAFALQDK 294

Query: 706 ---VKIMNEEQFLFLLQQYNT 723
              +++M E  FL +L   +T
Sbjct: 295 GQDIELMTEADFLQVLDGVST 315


>gi|229175172|ref|ZP_04302688.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3]
 gi|228608308|gb|EEK65614.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3]
          Length = 280

 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 19/103 (18%)

Query: 635 SIGRHEKNVSSEIE------NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           S+   + NV++E+        K +VFTG L    R +A + +   G +    +++ T+ I
Sbjct: 178 SLNLKDINVATEVSEDHPFYQKHIVFTGKLNAYTRIEAAQLIANKGGIPQNGINKNTNYI 237

Query: 689 IVGD--------NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718
           I+GD        N  SKLEKA++L      ++I++EE+F+ +L
Sbjct: 238 IIGDFDNVMIKGNKSSKLEKAEKLIAQGKELEIISEEEFMRML 280


>gi|126651945|ref|ZP_01724137.1| DNA polymerase III subunit epsilon [Bacillus sp. B14905]
 gi|126591214|gb|EAZ85323.1| DNA polymerase III subunit epsilon [Bacillus sp. B14905]
          Length = 132

 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 8/78 (10%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---GSKLEKAQQL- 704
           +K++VFTG L  + R +A + V   G  +   ++++TD +I+GD      +K  KA+QL 
Sbjct: 47  HKQIVFTGALSTMTRSEAAKQVKACGGFLQGTVTQQTDFVILGDKRRGISTKQRKAEQLM 106

Query: 705 ----GVKIMNEEQFLFLL 718
                ++I+ E+ FL+L+
Sbjct: 107 NYGEDIQILIEDDFLWLI 124


>gi|157413924|ref|YP_001484790.1| hypothetical protein P9215_15911 [Prochlorococcus marinus str. MIT
           9215]
 gi|157388499|gb|ABV51204.1| Hypothetical protein P9215_15911 [Prochlorococcus marinus str. MIT
           9215]
          Length = 249

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            +++PKIDG  I IRY  GKF  A  +    +G DVS+ I+ I  +P  +   I    ++
Sbjct: 74  LSIQPKIDGCAIAIRYINGKFNKAITK----TGFDVSSKIKQIKNVPDCIP--IKRDFQI 127

Query: 188 RGEVYIS 194
           RGE+Y +
Sbjct: 128 RGELYAT 134


>gi|331246527|ref|XP_003335896.1| replication factor C subunit 1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309314886|gb|EFP91477.1| replication factor C subunit 1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1470

 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L+ + R  AQ    + G  V+   S KT  +++G + G  KLE  ++  +K + 
Sbjct: 68  FVFTGELESLSREDAQTLAKRYGGRVTTSPSSKTSFVVLGSDAGPKKLEMIKKHKIKTIT 127

Query: 711 EEQFLFLL 718
           E++FL L+
Sbjct: 128 EDEFLNLI 135


>gi|304311282|ref|YP_003810880.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma
           proteobacterium HdN1]
 gi|301797015|emb|CBL45228.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma
           proteobacterium HdN1]
          Length = 297

 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 16/100 (16%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
           PS+ R E N   E+  + LVFTG L+ + R +A      +G  V   +++KT I++VGD 
Sbjct: 194 PSV-RREGNPQGELTGEILVFTGQLE-MSRQEAANIAASVGCEVVPSVTKKTTILVVGDQ 251

Query: 694 PGSKL---------EKAQQ-----LGVKIMNEEQFLFLLQ 719
             SKL          KA++     L ++I+ E  F+ L++
Sbjct: 252 DISKLAGHEKSAKHRKAEELISMGLSIRILGESDFMELVK 291


>gi|326437790|gb|EGD83360.1| hypothetical protein PTSG_03969 [Salpingoeca sp. ATCC 50818]
          Length = 1046

 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
           K V TG L  I+R  A+  +   G  V   +S + + I+ G  PG SK++KA++L + ++
Sbjct: 342 KFVLTGVLDSIERDTAERLIKDHGGAVQKSVSGRVNYIVAGIEPGPSKMKKAEELKLNVI 401

Query: 710 NEEQFLFLLQ 719
           +E+    L++
Sbjct: 402 DEDGLFDLIR 411


>gi|126696079|ref|YP_001090965.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9301]
 gi|126543122|gb|ABO17364.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9301]
          Length = 249

 Score = 43.9 bits (102), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 122/308 (39%), Gaps = 66/308 (21%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++DD  Y+    +I D ++D L++                      N +    N
Sbjct: 5   LEERIEWYDD-NYRNGNALISDKQFDQLEK----------------------NLLRTNPN 41

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
              FK  + +   SLEK  +I++  K +    R             +EPKIDG  + ++Y
Sbjct: 42  CDYFKKKNKLVLPSLEKD-SIDEFLKGLLADTRL-----------LIEPKIDGCAVALQY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G    A  R     G DV++ +  I  IP  L L    +++VRGE+Y           
Sbjct: 90  RDGTLEKAISR----KGTDVTSKLIKIQDIPNNLPLQ--GVLQVRGELY----------- 132

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
              A  + P  + R  ASG LR       ++ L+F    +  ++      QYE  + +  
Sbjct: 133 ---APNQSPNISQR-IASGFLRA--KEGFSQSLSFCAFQILNST----LNQYESKKSLSK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR--S 321
           LGF +   +   N    +  +       +    Y  DG+V K++   LQ  + E++    
Sbjct: 183 LGFKIPQDI-SCNFTSQVEVFRKRWLEGKLFSEYPTDGIVVKINSRKLQ-LIREKSNLDY 240

Query: 322 PRWMISHK 329
           P W ++ K
Sbjct: 241 PYWQVAIK 248


>gi|530483|emb|CAA83831.1| DNA ligase [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 42

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 2/44 (4%)

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           A RG+G  GEDV+  +R I +IP  L ++  E +EVRGE+Y+SK
Sbjct: 1   ATRGNGVIGEDVTTNVRTIKSIP--LKISKKERVEVRGEIYLSK 42


>gi|157117839|ref|XP_001653061.1| replication factor C large subunit, putative [Aedes aegypti]
 gi|108883325|gb|EAT47550.1| replication factor C large subunit, putative [Aedes aegypti]
          Length = 1047

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
           + V TG L+ ++R +  + +   G  V   +S+K   ++VG++ G SKL KA +LG+  +
Sbjct: 285 QFVVTGVLESMERDECAQVIKDFGGKVVGSVSKKLTHMVVGEDAGPSKLAKADELGIPQI 344

Query: 710 NEEQFLFLLQQ 720
           +E+  L L+++
Sbjct: 345 SEDDLLDLIRE 355


>gi|85001193|ref|XP_955315.1| replication factor c-related protein [Theileria annulata strain
           Ankara]
 gi|65303461|emb|CAI75839.1| replication factor c-related protein, putative [Theileria annulata]
          Length = 961

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 15/87 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKL 698
           IE KK VFTG +  I R +A   V +LG +V + +S  T+ ++ G+          G K 
Sbjct: 347 IEGKKFVFTGEMS-IDRLEATFRVKKLGGIVVSAVSGVTNYLVYGEKLEDGRPYQSGVKY 405

Query: 699 EKA------QQLGVKIMNEEQFLFLLQ 719
           +KA      + L ++++NE+QFL LLQ
Sbjct: 406 KKALELNSKKNLNIQLLNEQQFLQLLQ 432


>gi|72382253|ref|YP_291608.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A]
 gi|72002103|gb|AAZ57905.1| putative NAD-dependent DNA ligase (contains BRCT domain type II)
           [Prochlorococcus marinus str. NATL2A]
          Length = 210

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 51/223 (22%)

Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
           +W K  + S    ++PKIDG  I +RY+ G+ V A  R D    E+    IR I +IP  
Sbjct: 24  WWAKLPEGSTM-VVQPKIDGCAIGLRYKYGQLVDAYTRDDSEIIEN----IRNINSIP-- 76

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL-----NPTD 231
                           +S +D L +  E+  V   P++N + +   +L        N T 
Sbjct: 77  ----------------LSIDDSLKVEVELEGVLYTPFSNSKISIEQLLSNSFSEIDNSTS 120

Query: 232 ITRYLNFFVHGLGKTSEIFAKGQYEM--LQKMRCLGFPV-----NNGVRQANTFHGIVSY 284
           I          L K  +IF     E+  L +++  GF V      +  RQ   +H     
Sbjct: 121 I----------LFKAFQIFCSKSDELSDLTQLQNWGFEVPITLRTDDPRQVKRWHS-QWI 169

Query: 285 YNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
            NE+    S LP   +G+V K +    +  LG    SP W ++
Sbjct: 170 KNEL---FSNLP--TNGIVAKCNSSLTKNFLGSSPSSPNWALA 207


>gi|126696886|ref|YP_001091772.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543929|gb|ABO18171.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9301]
          Length = 249

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            +++PKIDG  I IRY  GKF  A  +     G DVS+ I+ I  +P  +   I    ++
Sbjct: 74  LSIQPKIDGCAIAIRYLDGKFNKAITK----KGFDVSSKIKQIKNVPDYIP--IKRDFQI 127

Query: 188 RGEVYIS 194
           RGE+Y +
Sbjct: 128 RGELYAT 134


>gi|315050906|ref|XP_003174827.1| hypothetical protein MGYG_02357 [Arthroderma gypseum CBS 118893]
 gi|311340142|gb|EFQ99344.1| hypothetical protein MGYG_02357 [Arthroderma gypseum CBS 118893]
          Length = 1055

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G    +  S KT  +++G++ G  KLE  Q+  +K +N
Sbjct: 318 FVFTGVLDSLGREQGQNLVKKFGGKSMSAPSSKTSYVVLGNDAGPKKLETIQKYKLKTIN 377

Query: 711 EEQFLFLLQQ 720
           EE    L+++
Sbjct: 378 EEGLFELIRK 387


>gi|67611464|ref|XP_667157.1| replication factor C subunit 1 [Cryptosporidium hominis TU502]
 gi|54658259|gb|EAL36923.1| replication factor C subunit 1 [Cryptosporidium hominis]
          Length = 854

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--------PGSKLEKAQQ 703
           +V TGT     R + +++V  LG  +++ +S +T  +I G++         GSK   A+ 
Sbjct: 134 IVVTGTFNSNSRQEIEDFVKILGGKLTSAVSGRTSYLIAGNSLEDGRSIEEGSKYRNAKS 193

Query: 704 LGVKIMNEEQFLFLLQQY 721
            GVKI++E++F+ +   Y
Sbjct: 194 KGVKILSEDEFIEIYTNY 211


>gi|124025816|ref|YP_001014932.1| hypothetical protein NATL1_11091 [Prochlorococcus marinus str.
           NATL1A]
 gi|123960884|gb|ABM75667.1| Hypothetical protein NATL1_11091 [Prochlorococcus marinus str.
           NATL1A]
          Length = 200

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 51/223 (22%)

Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
           +W K  + S    ++PKIDG  I +RY+ G+ V A  R D    E+    IR I +IP  
Sbjct: 14  WWAKLPEGSTM-VVQPKIDGCAIGLRYKYGQLVDAYTRDDSEIIEN----IRNINSIP-- 66

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL-----NPTD 231
                           +S +D L +  E+  V   P++N + +   +L        N T 
Sbjct: 67  ----------------LSIDDSLKVEVELEGVLYSPFSNSKISIEQLLSNSFSKIDNSTS 110

Query: 232 ITRYLNFFVHGLGKTSEIFAKGQYEM--LQKMRCLGFPV-----NNGVRQANTFHGIVSY 284
           I          L K  +IF     E+  L +++  GF V      +  RQ   +H     
Sbjct: 111 I----------LFKAFQIFCSKSDELSDLTQLQNWGFEVPITLRTDDPRQVKRWHS-QWI 159

Query: 285 YNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
            NE+    S LP   +G+V K +    +  LG    SP W ++
Sbjct: 160 KNEL---FSNLP--TNGIVAKCNSSLTKNFLGASPSSPNWALA 197


>gi|123966756|ref|YP_001011837.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9515]
 gi|123201122|gb|ABM72730.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9515]
          Length = 249

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           +++PKIDG  I I Y  GKF  A  R    +G DV++ I+ I  +P  L   I    +VR
Sbjct: 75  SIQPKIDGCAIAINYINGKFNKAITR----TGFDVTSKIKKIKDVPSRLP--IQRDFQVR 128

Query: 189 GEVY 192
           GE+Y
Sbjct: 129 GELY 132


>gi|123969095|ref|YP_001009953.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           AS9601]
 gi|123199205|gb|ABM70846.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           AS9601]
          Length = 249

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            +++PKIDG  I IRY  GKF  A  +     G DVS+ I+ I  +P  +   I    ++
Sbjct: 74  LSIQPKIDGCAIAIRYIDGKFNKAITK----KGFDVSSKIKQIKNVPDCIP--IKRDFQI 127

Query: 188 RGEVYIS 194
           RGE+Y +
Sbjct: 128 RGELYAT 134


>gi|154301785|ref|XP_001551304.1| hypothetical protein BC1G_10044 [Botryotinia fuckeliana B05.10]
 gi|150855706|gb|EDN30898.1| hypothetical protein BC1G_10044 [Botryotinia fuckeliana B05.10]
          Length = 1054

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  I R +  E V + G  ++   S KT+ +++G + G SKL K   L +K ++
Sbjct: 317 FVFTGMLDTISRDEGIELVKRYGGKITGAPSSKTNFVVLGKDAGPSKLRKIATLKIKTID 376

Query: 711 EEQFLFLLQ 719
           E     LL+
Sbjct: 377 EHGIFHLLR 385


>gi|406360|gb|AAD12433.1| homology to DNA ligase M36417 [Mycoplasma genitalium]
          Length = 98

 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 11/106 (10%)

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
           L  GD     L D+I   +   + R +  LGI+HVG  +A++LA ++           NI
Sbjct: 2   LKIGDKLFNKLVDNIENSKQKGMARLLTGLGIKHVGNVLAKNLANHF----------KNI 51

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL-LKEV 632
            A  +    +LI +  VG  +A+++  ++ +P ++  +E L L++V
Sbjct: 52  KALQHASLENLISLNDVGITVAESLYNWFHDPNHLQLIEQLELRQV 97


>gi|299541821|ref|ZP_07052144.1| DNA polymerase III [Lysinibacillus fusiformis ZC1]
 gi|298725559|gb|EFI66200.1| DNA polymerase III [Lysinibacillus fusiformis ZC1]
          Length = 110

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 8/86 (9%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---GSK 697
           +N++    NK++VFTG L  + R +A + V   G  +   +++ TD +++G+      +K
Sbjct: 17  ENLTHPFYNKQIVFTGALSTMTRSEAAKQVKAYGGYLQGAVTQHTDFVVLGNKRRGISAK 76

Query: 698 LEKAQQL-----GVKIMNEEQFLFLL 718
             KA+QL      ++++ E+ FL+L+
Sbjct: 77  QHKAEQLIRQGQDIQMLIEDDFLWLI 102


>gi|170065938|ref|XP_001868075.1| replication factor C large subunit [Culex quinquefasciatus]
 gi|167862647|gb|EDS26030.1| replication factor C large subunit [Culex quinquefasciatus]
          Length = 1042

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
           + V TG ++ ++R +  + +   G  V   +S+K   ++VG++ G SKL KA +LG+  +
Sbjct: 277 QFVVTGVMESMERDECAQVIKDFGGKVVTSVSKKLTHMVVGEDAGPSKLAKADELGIPQI 336

Query: 710 NEEQFLFLLQQ 720
           +E+Q   L+++
Sbjct: 337 SEDQLFDLIRE 347


>gi|309784373|ref|ZP_07679012.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           dysenteriae 1617]
 gi|308927880|gb|EFP73348.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           dysenteriae 1617]
          Length = 153

 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++G
Sbjct: 66  VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124

Query: 190 EVYISK 195
           E+++ +
Sbjct: 125 EIFLQR 130


>gi|123395219|ref|XP_001300705.1| differentiation specific element binding protein [Trichomonas
           vaginalis G3]
 gi|121881785|gb|EAX87775.1| differentiation specific element binding protein, putative
           [Trichomonas vaginalis G3]
          Length = 876

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQL 704
           +E    V TGT+  I R   ++ + + G  ++  +S KTD++I G  +   SKL +A++ 
Sbjct: 52  LEGITFVATGTMPSITRETLKDIIEKYGGRLTTSISGKTDVVIRGCIEVGPSKLAQARER 111

Query: 705 GVKIMNEEQFLFLLQQYN 722
           G+ I++EE     LQ  N
Sbjct: 112 GLLIIDEESLFQYLQSTN 129


>gi|118397505|ref|XP_001031085.1| BRCT domain containing protein [Tetrahymena thermophila]
 gi|89285407|gb|EAR83422.1| BRCT domain containing protein [Tetrahymena thermophila SB210]
          Length = 1123

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 642 NVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-------- 692
           N+ S+I   + +VFTG    I R    + VT +GA  +  +S KT +++ G         
Sbjct: 329 NIDSDILAGQTIVFTGDFDGISRDTMSKIVTDMGAKNTGSVSGKTTLLVHGSVLEDGRPP 388

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G K + A+Q G KIMN+ QF   L+
Sbjct: 389 EQGKKYQTAKQKGTKIMNQSQFSDYLK 415


>gi|299142830|ref|ZP_07035958.1| exonuclease [Prevotella oris C735]
 gi|298575698|gb|EFI47576.1| exonuclease [Prevotella oris C735]
          Length = 284

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 14/91 (15%)

Query: 646 EIENK-------KLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-S 696
           E+ENK       ++V TG L+    R    E +   GA ++  +S++TDI+IVG   G S
Sbjct: 191 EVENKETPFFMKRVVLTGNLEMFPARETIAEVLKAYGADINTSISKRTDIVIVGKGAGPS 250

Query: 697 KLEKAQQL-----GVKIMNEEQFLFLLQQYN 722
           K++K ++L      ++++ E + L +++++N
Sbjct: 251 KMQKIEELQAQGHNLRVIEEPELLSIMKEFN 281


>gi|254526990|ref|ZP_05139042.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus
           marinus str. MIT 9202]
 gi|221538414|gb|EEE40867.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus
           marinus str. MIT 9202]
          Length = 249

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 121/310 (39%), Gaps = 70/310 (22%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++DD  Y+    +I D ++D L++                      N +    N
Sbjct: 5   LEERIEWYDD-NYRNGNALISDKQFDQLEK----------------------NLLRTNPN 41

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
              FK  + +   SLEK    E L+  +  TR+               +EPKIDG  + +
Sbjct: 42  CDYFKKKNKLVLPSLEKDSIDEFLKGLLVDTRL--------------LIEPKIDGCAVAL 87

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
           +Y  G    A  R     G DV+  +  I  IP  L L    +++VRGE+Y         
Sbjct: 88  QYRDGTLEKAISR----KGVDVTTKLIKIQDIPNNLPLR--GVLQVRGELY--------- 132

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
                A  + P  + R  ASG LR       +  L+F    +  ++      QYE  + +
Sbjct: 133 -----APNQSPNISQR-IASGFLRA--KEGFSERLSFCAFQILNST----LNQYESKKNL 180

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR- 320
             LGF +   +   N    +  +  +    +    Y  DG+V K++   LQ  + E++  
Sbjct: 181 SKLGFTITQDI-SCNFTSQVDVFRKQWLEGKLFSKYPTDGIVVKINSRKLQ-LIREKSNL 238

Query: 321 -SPRWMISHK 329
             P W ++ K
Sbjct: 239 DYPYWQVAIK 248


>gi|198414852|ref|XP_002119468.1| PREDICTED: similar to ISRE-binding protein, partial [Ciona
           intestinalis]
          Length = 568

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           S  I + EKN    +E    V TG    + R + +  V + G  V + +S +T  +I G 
Sbjct: 272 SKEIPKGEKNC---MEGLSFVITGVQDSLSREEIKSLVERYGGKVVSAVSGRTSYLITGT 328

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + G SKL KA+Q   KI+ E++FL L++
Sbjct: 329 DAGESKLNKAKQHKTKIIEEDEFLDLIR 356


>gi|213027451|ref|ZP_03341898.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 79

 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
          +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1  MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74 PLNKIGGEMNLSLFKVTHSIP 94
          P  ++G     +  ++ H +P
Sbjct: 58 PTQRVGAAPLTAFNQIRHEVP 78


>gi|170106533|ref|XP_001884478.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164640824|gb|EDR05088.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 950

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L    R +A +   + G  V    S KTD +++GDN G SK+   ++  +  ++
Sbjct: 293 FVFTGELSSFSRDEAIDLAKRFGGRVVLQPSSKTDYVVLGDNAGPSKIAAIKKHKINTLS 352

Query: 711 EEQFLFLLQQYNTTLRIHD 729
           E++FL L+     + ++ D
Sbjct: 353 EDEFLGLIATRKGSGKLDD 371


>gi|322778907|gb|EFZ09323.1| hypothetical protein SINV_15414 [Solenopsis invicta]
          Length = 1027

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            + TG L  ++R++A++ + +        +S K + +IVGD  G +KL KA  LG+K ++
Sbjct: 320 FLITGVLDSLERNEAEDLIRKYSGRTVNTVSSKVNYVIVGDEAGPAKLTKANSLGIKQIS 379

Query: 711 EEQFLFLLQ 719
           E+  L +++
Sbjct: 380 EDDLLEMIR 388


>gi|330969182|gb|EGH69248.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 68

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
           V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL K
Sbjct: 21  VLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTK 68


>gi|157311015|ref|YP_001469010.1| gp012 [Lactococcus phage KSY1]
 gi|108861355|gb|ABG21554.1| gp012 [Lactococcus phage KSY1]
          Length = 471

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 129/317 (40%), Gaps = 77/317 (24%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            +PK DG    +  E GK    + RG+G+ G+D+S  ++ I     V+   +P +  + G
Sbjct: 76  FQPKFDGVSGELIVEHGKITAISSRGNGNFGQDLSD-LKDILFNDVVI---MPTVRAIYG 131

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E ++ +ND              P    RN  SG            YLN  VH      + 
Sbjct: 132 E-FVWRND-------------NPSQKDRNLVSG------------YLNKKVHNKEPHLDF 165

Query: 250 FAKGQYEMLQKM-RCLGFP----VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI--DGL 302
            A   Y+ +    R + F        G++ ++    I++   E+ +     P DI  DG 
Sbjct: 166 IA---YKAIDSNGRVMDFMQSQLYTTGIKWSDC--AILTDELEIPNFDGRYP-DIKRDGT 219

Query: 303 VYK--VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           + K  VD F+L+ +      +   +   K   K ++T                  A+LEP
Sbjct: 220 IIKNSVDIFALKPEPEAGITTITGVTWKKCKSKFSAT------------------AQLEP 261

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V IG   +++ TL    YIK +D           + +GD+V++ R G+VIP  ++ +V E
Sbjct: 262 VTIGAVNVSSVTLP-LSYIKDMD-----------LMIGDKVMISRRGDVIP-CIEFLV-E 307

Query: 421 RHPDAQPFSFPSFCPIC 437
              ++ P    S C  C
Sbjct: 308 HTEESSPIINDSKCEYC 324


>gi|9964513|ref|NP_064981.1| putative NAD+ dependent DNA ligase [Amsacta moorei entomopoxvirus
           'L']
 gi|9944722|gb|AAG02905.1|AF250284_199 AMV199 [Amsacta moorei entomopoxvirus 'L']
          Length = 532

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 15/123 (12%)

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L Y IDG++ + +  +   + G    +P W I  K  +K   T + +I   I +  I  P
Sbjct: 256 LSYYIDGIIIRNNNLNPVIKSG----NPPWSICFKETDKIYITTVKEIKWDISKKNIYIP 311

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A LEP+ I  + I     HN  Y+  +D         + I  G  V + + G VIP + 
Sbjct: 312 KAILEPIIIDNSTINAVACHNAKYV--ID---------KKINTGSIVEIVKKGGVIPIIN 360

Query: 415 DII 417
           ++I
Sbjct: 361 NVI 363


>gi|123968278|ref|YP_001009136.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           AS9601]
 gi|123198388|gb|ABM70029.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           AS9601]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 122/310 (39%), Gaps = 70/310 (22%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++DD  Y+    +I D ++D L++                      N +    N
Sbjct: 5   LEERIEWYDD-NYRNGNALISDKQFDQLEK----------------------NLLRTNPN 41

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
              FK  + I   SLEK    E L+  +  TR+               +EPKIDG  + +
Sbjct: 42  CDYFKKKNKIVLPSLEKDSIDEFLKGLLVDTRL--------------LIEPKIDGCAVAL 87

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
           +Y  G    A  R     G DV++ +  +  IP  L L    +++VRGE+Y         
Sbjct: 88  QYRDGTLEKAISR----KGADVTSKLIKVQDIPNNLPLR--GVLQVRGELY--------- 132

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
                A  + P  + +  ASG LR       +  L+F    +  ++      QYE  + +
Sbjct: 133 -----APNQSPNISQK-IASGFLRA--KEGFSESLSFCAFQILNST----LNQYESKKSL 180

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR- 320
             LGF +   +   N    +  +  +    +    Y  DG+V K++   LQ  + E++  
Sbjct: 181 SKLGFTIPQDI-SCNFTSQVEVFRKQWLEGKLFSKYPTDGIVVKINSRKLQ-LIREKSNL 238

Query: 321 -SPRWMISHK 329
             P W ++ K
Sbjct: 239 DYPYWQVAIK 248


>gi|312282245|dbj|BAJ33988.1| unnamed protein product [Thellungiella halophila]
          Length = 933

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMN 710
            V +GTL  ++R +A++ + + G  V+  +S+KT  ++  ++  G K EKA++LG K + 
Sbjct: 185 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTTYLLCDEDIGGRKSEKAKELGTKFLT 244

Query: 711 EEQFLFLLQ 719
           E+    +++
Sbjct: 245 EDGLFDMIR 253


>gi|221052935|ref|XP_002257842.1| replication factor C subunit 1 [Plasmodium knowlesi strain H]
 gi|193807674|emb|CAQ38378.1| replication factor C subunit 1, putative [Plasmodium knowlesi
           strain H]
          Length = 900

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 15/94 (15%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEKA- 701
           K V TG  +   R + Q  + + G  V + +S KT  +I G+        N G K +KA 
Sbjct: 196 KFVLTGVFKNFSRDELQSKIKEHGGNVMSAVSSKTHYLIHGEYLEDGRMYNEGKKYQKAL 255

Query: 702 -----QQLGVKIMNEEQFLFLL-QQYNTTLRIHD 729
                 +  +KI+NEE+FL +L ++ N T +  D
Sbjct: 256 EVQKMSKCNIKILNEEEFLQMLPEEKNKTSKWED 289


>gi|297812313|ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319877|gb|EFH50299.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 960

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMN 710
            V +GTL  ++R +A++ + + G  ++  +S+KT  ++  ++  G K EKA++LG K + 
Sbjct: 216 FVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTTYLLCDEDIGGRKSEKAKELGTKFLT 275

Query: 711 EEQFLFLLQ 719
           E+    +++
Sbjct: 276 EDGLFDMIR 284


>gi|205364119|gb|ACI04517.1| replication factor C large subunit [Hydra magnipapillata]
          Length = 1116

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+   R +  + + + G  V+  +S KT  IIVG +PG +K+EKA +   K ++
Sbjct: 365 FVITGVLEAFDRDEIADSIKRYGGKVTTSVSGKTSYIIVGRDPGETKIEKALKHKTKQID 424

Query: 711 EEQFLFLL 718
           E+ F+ L+
Sbjct: 425 EDGFIDLI 432


>gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 326

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 14/90 (15%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---- 694
            E ++S  + N+  V TG L +  R +A + +  LG +    +++KT+I+I+GDN     
Sbjct: 232 QEFDISHPLYNQNCVITGILGRFTRSQAMQIIADLGGINQDSVTKKTNILILGDNDYRAM 291

Query: 695 -----GSKLEKAQQL-----GVKIMNEEQF 714
                 +KL++A++L      +KI++E  F
Sbjct: 292 IKGGISNKLKRARELILKGQDLKIISENVF 321


>gi|22326948|ref|NP_680188.1| AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA
           clamp loader/ nucleoside-triphosphatase/ nucleotide
           binding [Arabidopsis thaliana]
 gi|13374860|emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis
           thaliana]
 gi|48958527|gb|AAT47816.1| At5g22010 [Arabidopsis thaliana]
 gi|332005585|gb|AED92968.1| replication factor C1 [Arabidopsis thaliana]
          Length = 956

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMN 710
            V +GTL  ++R +A++ + + G  ++  +S+KT  ++  ++  G K EKA++LG K + 
Sbjct: 212 FVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTTYLLCDEDIGGRKSEKAKELGTKFLT 271

Query: 711 EEQFLFLLQ 719
           E+    +++
Sbjct: 272 EDGLFDIIR 280


>gi|288923046|ref|ZP_06417199.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
 gi|288345596|gb|EFC79972.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
          Length = 296

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 18/147 (12%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP----SIGRHEK--- 641
           AH+ +D   ++   L+  I+++A  +F + P   C VE     V P    + GR      
Sbjct: 137 AHDAEDDAEVLAA-LLPRILSRAAEQFLELPLTRCGVERDGVAVYPPRYSAAGRPPPCGY 195

Query: 642 -------NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                    +  ++  ++VFTG   + +R    +     G  V+A +SR+T +++  +  
Sbjct: 196 RNPGPLAPGAPLVQGMRVVFTGP-TRTERGALVDRAAAAGLEVTASVSRRTSLLVTNEKH 254

Query: 695 GS--KLEKAQQLGVKIMNEEQFLFLLQ 719
           G+  K   A QLG+   +E +FL LL+
Sbjct: 255 GATRKARAAAQLGIPTRDEGEFLALLE 281


>gi|195452278|ref|XP_002073285.1| GK14054 [Drosophila willistoni]
 gi|194169370|gb|EDW84271.1| GK14054 [Drosophila willistoni]
          Length = 983

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ ++R +A+  + + G  V  ++ +K   ++VG++ G  KL  A++L + I++
Sbjct: 223 FVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVVGEDAGPKKLAVAEELNIPILS 282

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 283 EDGLFDLIRE 292


>gi|157413113|ref|YP_001483979.1| hypothetical protein P9215_07781 [Prochlorococcus marinus str. MIT
           9215]
 gi|157387688|gb|ABV50393.1| Hypothetical protein P9215_07781 [Prochlorococcus marinus str. MIT
           9215]
          Length = 249

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 122/310 (39%), Gaps = 70/310 (22%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++DD  Y+    +I D ++D L++                      N +    N
Sbjct: 5   LEERIEWYDD-NYRNGNALISDKQFDQLEK----------------------NLLRTNPN 41

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
              FK  + +   SLEK    E L+  +  TR+               +EPKIDG  + +
Sbjct: 42  CDYFKKKNKLVLPSLEKDSIDEFLKGLLVDTRL--------------LIEPKIDGCAVAL 87

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
           +Y  G    A  R     G D+++ +  +  IP  L L    +++VRGE+Y         
Sbjct: 88  QYRDGTLEKAISR----KGVDITSKLIKVQDIPNNLPLR--GVLQVRGELY--------- 132

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
                A  + P  + R  ASG LR       +  L+F    +  ++      QYE  + +
Sbjct: 133 -----APNQSPNISQR-IASGFLRA--KEGFSERLSFCAFQILNST----LNQYESKKNL 180

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR- 320
             LGF +   +   N    +  +  +    +    Y  DG+V K++   LQ  + E++  
Sbjct: 181 SKLGFTIPQDI-SCNFTSQVEVFRKQWLEGKLFSKYPTDGIVVKINSRKLQ-LIREKSNL 238

Query: 321 -SPRWMISHK 329
             P W ++ K
Sbjct: 239 DYPYWQVAIK 248


>gi|289679597|ref|ZP_06500487.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           FF5]
          Length = 102

 Score = 42.0 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ P  ++G    
Sbjct: 11  LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114
            +  +V H +P LSL   +   D+ +F  R+
Sbjct: 68  SAFTQVRHEMPMLSLGNAFEENDMLEFDRRV 98


>gi|333030386|ref|ZP_08458447.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
 gi|332740983|gb|EGJ71465.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
          Length = 279

 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 54/88 (61%), Gaps = 7/88 (7%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKL 698
           + N  +   N+K+V TGT Q+  R +  E + QLGA ++  +S +T+ ++ G+  G +KL
Sbjct: 191 QANPQNPFYNQKVVITGTFQR-DRMELAEQIQQLGAKINTSISSRTNFVLKGEKAGPAKL 249

Query: 699 EK-----AQQLGVKIMNEEQFLFLLQQY 721
           ++     +Q + ++++ EE+ + +L+++
Sbjct: 250 KRIHELQSQGVPIQVVEEEKLMKVLEKW 277


>gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 328

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692
           P+ GR+E      ++  ++ F+G    + R   ++   + G  V+  +SR T +++  D 
Sbjct: 233 PNPGRYEPG-GQLVQGMRVAFSGD-TSVDRELLEDRAIEAGLHVATSVSRLTSVLVTNDP 290

Query: 693 -NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +P SK  KA+  G  +++E  F+ LLQ
Sbjct: 291 DSPTSKTAKARSFGTPVIDEAAFMQLLQ 318


>gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
 gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
          Length = 319

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
           NK  VFTG L+K+ R +A + V   G      L++KT+ +I+G+N
Sbjct: 230 NKVCVFTGALEKMTRSEAMQAVVNFGGTCKDNLTKKTNFLILGNN 274


>gi|1772609|emb|CAA71357.1| lysostaphin-like protein [Thermotoga maritima]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 25/139 (17%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPI----------ILDSEYDALKRRCDAIAHAFP 63
           I  A  E+    +E+SY    +    KP+          I DS YD ++ R    +  FP
Sbjct: 151 IPHAHFEIRDRNEEVSYDPSTFLNLPKPVDEDIVLEKIKIGDSVYDFVEGRTYPFSGNFP 210

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHS-IPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           DLA      G  N +G      L K++   IP      +W + D RK ++  YRF     
Sbjct: 211 DLAIKAYSKGFNNTLG------LKKISFDQIPWSEFTNVWGVYD-RKSVSAAYRF----- 258

Query: 123 DNSIFFTLEPKIDGTMITI 141
              +++ L P+   +MI +
Sbjct: 259 --ELWYKLFPETFSSMIKV 275


>gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC
           824]
 gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing
           BRCT domain [Clostridium acetobutylicum ATCC 824]
          Length = 306

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 14/86 (16%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNP 694
           + E +N+ +VFTG L  + R +A   V +LG    + +++KT I++           +  
Sbjct: 218 ADEFKNEVVVFTGRLDSMSRDEAMGLVRRLGGTAGSSVTKKTTILVTNMKNIKNLRREEM 277

Query: 695 GSKLEKAQQL-----GVKIMNEEQFL 715
            +KL++A  L      +K +NEE+FL
Sbjct: 278 SNKLKRASDLNARGQNIKFLNEEEFL 303


>gi|221101530|ref|XP_002169845.1| PREDICTED: similar to replication factor C large subunit, partial
           [Hydra magnipapillata]
          Length = 932

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+   R +  + + + G  V+  +S KT  IIVG +PG +K+EKA +   K ++
Sbjct: 366 FVITGVLEAFDRDEIADSIKRYGGKVTTSVSGKTSYIIVGRDPGETKIEKALKHKTKQID 425

Query: 711 EEQFLFLL 718
           E+ F+ L+
Sbjct: 426 EDGFIDLI 433


>gi|156093631|ref|XP_001612854.1| replication factor C subunit 1 [Plasmodium vivax SaI-1]
 gi|148801728|gb|EDL43127.1| replication factor C subunit 1, putative [Plasmodium vivax]
          Length = 945

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 14/86 (16%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEK 700
           N K V TG  +   R + Q  + + G  V + +S KT  +I G+        N G K +K
Sbjct: 235 NLKFVLTGVFKNFSRDELQSKIKEHGGSVMSAVSSKTHYLIHGEYLEDGRMYNEGKKYQK 294

Query: 701 AQQLG------VKIMNEEQFLFLLQQ 720
           A +L       +KI+NEEQ L ++ Q
Sbjct: 295 AFELQKMSKSIIKILNEEQLLQMMPQ 320


>gi|123966480|ref|YP_001011561.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200846|gb|ABM72454.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9515]
          Length = 251

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 33/205 (16%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +EPKIDG  I I+Y  G+ + A  R     G+DV+  I+ I  +P    + +  +I+VRG
Sbjct: 76  IEPKIDGCAIGIQYIDGQLIKAISR----KGDDVTNKIKEILDVPN--EIKVKGLIQVRG 129

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+      F  L +E      +P  + R A   +    +  D   +  F +   G+ +E 
Sbjct: 130 EL------FAPLENE------RPTYSQRKAGGYLRNEASKNDHLSFCGFQIIN-GRLNE- 175

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                ++ L  ++ LGF +    +       +  Y  +    +    Y  DG+V K++  
Sbjct: 176 -----HDSLVYLKKLGFTIPE-YKSLKYLTQVEMYRKQWAEKKLFTQYPTDGIVVKLNSR 229

Query: 310 SLQ----KQLGERARSPRWMISHKF 330
            LQ    K +G     P W ++  F
Sbjct: 230 KLQLIREKSVG---CYPYWQMAINF 251


>gi|330948476|gb|EGH48736.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 60

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +E    LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L
Sbjct: 1   KEKRESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALL 49


>gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA
           2018]
          Length = 317

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 14/86 (16%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNP 694
           + E +N+ +VFTG L  + R +A   V +LG    + +++KT I++           +  
Sbjct: 229 ADEFKNEVVVFTGRLDSMSRDEAMGLVRRLGGTAGSSVTKKTTILVTNMKNIKNLRREEM 288

Query: 695 GSKLEKAQQL-----GVKIMNEEQFL 715
            +KL++A  L      +K +NEE+FL
Sbjct: 289 SNKLKRASDLNARGQNIKFLNEEEFL 314


>gi|82541068|ref|XP_724804.1| replication factor C, 140 kDa subunit [Plasmodium yoelii yoelii
           str. 17XNL]
 gi|23479576|gb|EAA16369.1| replication factor C, 140 kDa subunit [Plasmodium yoelii yoelii]
          Length = 888

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 21/109 (19%)

Query: 636 IGRHEKNVSSEIE-----NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           + ++E NVS   +     NKK V TG  +   R   Q  + + G  V + +S +T  ++ 
Sbjct: 167 LQKNETNVSQNFDYLPFINKKFVLTGVFKTYSRDDLQNKIKEHGGSVMSAVSSRTHYLVH 226

Query: 691 GD--------NPGSKLEKAQQLG------VKIMNEEQFL--FLLQQYNT 723
           G+        + G K +KA +L       +KI+NEE+ L  F  QQ NT
Sbjct: 227 GEYLEDGRLYSEGKKYQKAYELSKQSKSIIKILNEEELLQMFPNQQSNT 275


>gi|195343531|ref|XP_002038351.1| GM10782 [Drosophila sechellia]
 gi|194133372|gb|EDW54888.1| GM10782 [Drosophila sechellia]
          Length = 980

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+  G  KL  A +L + I++
Sbjct: 242 FVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAMADELNIPILS 301

Query: 711 EEQFLFLLQQYNTTLRI 727
           E+    L+++ +   ++
Sbjct: 302 EDGLFDLIREKSGNAKL 318


>gi|317503610|ref|ZP_07961630.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
 gi|315665271|gb|EFV04918.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
          Length = 284

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 14/91 (15%)

Query: 646 EIENK-------KLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-S 696
           E+ENK       ++V TG L+    R    + +   GA ++  +S++TDI+IVG   G S
Sbjct: 191 EVENKETPFFMKRVVLTGNLETFPARETIAKMLKAYGADINTSISKRTDIVIVGKGAGPS 250

Query: 697 KLEKAQQL-----GVKIMNEEQFLFLLQQYN 722
           K++K ++L      ++++ E + L +++++N
Sbjct: 251 KMQKIEELQAQGHNLRVIEEPELLSIMKEFN 281


>gi|17737765|ref|NP_524229.1| germ line transcription factor 1, isoform A [Drosophila
           melanogaster]
 gi|12644230|sp|P35600|RFC1_DROME RecName: Full=Replication factor C subunit 1; AltName:
           Full=Activator 1 140 kDa subunit; AltName:
           Full=Activator 1 subunit 1; AltName: Full=Germline
           transcription factor 1; AltName: Full=Replication factor
           C large subunit
 gi|2121267|gb|AAB58311.1| replication factor C large subunit [Drosophila melanogaster]
 gi|7296805|gb|AAF52082.1| germ line transcription factor 1, isoform A [Drosophila
           melanogaster]
 gi|28317228|gb|AAO39621.1| GH06471p [Drosophila melanogaster]
          Length = 986

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+  G  KL  A++L + I++
Sbjct: 242 FVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILS 301

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 302 EDGLFDLIRE 311


>gi|304728|gb|AAA28573.1| transcription factor [Drosophila melanogaster]
          Length = 986

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+  G  KL  A++L + I++
Sbjct: 242 FVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILS 301

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 302 EDGLFDLIRE 311


>gi|62472391|ref|NP_001014605.1| germ line transcription factor 1, isoform B [Drosophila
           melanogaster]
 gi|21483228|gb|AAM52589.1| AT18625p [Drosophila melanogaster]
 gi|61679311|gb|AAX52937.1| germ line transcription factor 1, isoform B [Drosophila
           melanogaster]
          Length = 1008

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+  G  KL  A++L + I++
Sbjct: 242 FVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILS 301

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 302 EDGLFDLIRE 311


>gi|227487575|ref|ZP_03917891.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092557|gb|EEI27869.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 310

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 15/87 (17%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV----------GDN 693
           S  +  + +VFTGTL++ +R   Q+ V+ +G +    L++KT +++V          G +
Sbjct: 219 SPALVGEHVVFTGTLKRGKRTDVQQLVSAIGGIADKSLTKKTTLLVVGILDPRRWVEGCS 278

Query: 694 PGSKLEKAQQL-----GVKIMNEEQFL 715
             SKL KA +L      +++++EE+F 
Sbjct: 279 GSSKLLKATKLRESGSPIEVISEEEFF 305


>gi|302865843|ref|YP_003834480.1| helix-turn-helix domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302568702|gb|ADL44904.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
           27029]
          Length = 281

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 35/170 (20%)

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV--YKVD--EFSLQKQLGERAR 320
           G  +     + N+    +S Y   +++ S  P  +  L+  Y VD  + +   QL + AR
Sbjct: 23  GLTLEAAADEINSTRSTLSRYENAQTLVS--PATVRALLTSYGVDPADIAAAVQLAKDAR 80

Query: 321 SPRWMISHKFAEKQASTRLLD-IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
            P W +S+ +   Q   R +D I ++   TGI    A  EP  + G       L   DYI
Sbjct: 81  KPGWWVSYSYLLDQ---RTIDFIALEAEATGI----ANFEPSVVPG------LLQTADYI 127

Query: 380 KGLDASGKVMRGG----RDIRVGDRVLVK-----RAGEVIPKVVDIIVNE 420
           +G      VMRGG     D +V  RV ++     R     P ++D I++E
Sbjct: 128 RG------VMRGGPHTLTDEQVEQRVQLRLDRQQRLSGAEPPILDAIIDE 171


>gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
 gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
          Length = 298

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 14/85 (16%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------PGSKLE 699
           N+ +VFTG L+K+ R  A + V  LG ++   +++ T+ +I+G+N           SK +
Sbjct: 213 NRHVVFTGKLEKMIRQDAMQIVVNLGGILDNSVTKSTNYLILGNNDYNAILKGEKSSKHK 272

Query: 700 KAQQL-----GVKIMNEEQFLFLLQ 719
           KA++L      ++I++E  F  L++
Sbjct: 273 KAEKLKLEGQDIEIIDEFTFYDLIE 297


>gi|198453986|ref|XP_001359419.2| GA10826 [Drosophila pseudoobscura pseudoobscura]
 gi|198132600|gb|EAL28565.2| GA10826 [Drosophila pseudoobscura pseudoobscura]
          Length = 988

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+  G  KL  A++L V I++
Sbjct: 252 FVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLMYLVVGEEAGPKKLATAEELNVTILS 311

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 312 EDGLFDLIRE 321


>gi|330884612|gb|EGH18761.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 52

 Score = 41.2 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
           V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL
Sbjct: 4   VLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKL 49


>gi|195152678|ref|XP_002017263.1| GL21622 [Drosophila persimilis]
 gi|194112320|gb|EDW34363.1| GL21622 [Drosophila persimilis]
          Length = 979

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+  G  KL  A++L V I++
Sbjct: 252 FVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLMYLVVGEEAGPKKLATAEELNVTILS 311

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 312 EDGLFDLIRE 321


>gi|301299722|ref|ZP_07205973.1| conserved hypothetical protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852696|gb|EFK80329.1| conserved hypothetical protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 89

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKL 698
           +NK +VFTG+LQ + R  A E +   G +V   +SR+TD +++          +    K 
Sbjct: 4   KNKCVVFTGSLQSMLRKDAIEKINAAGGIVKNYVSRETDYLVIAPRQLDMFEEERKSKKQ 63

Query: 699 EKAQQLG-----VKIMNEEQFLFLLQ 719
             A+++      +KI++EE+FL +L+
Sbjct: 64  IAAEKINMNGGEIKIISEEKFLSMLK 89


>gi|222616174|gb|EEE52306.1| hypothetical protein OsJ_34316 [Oryza sativa Japonica Group]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710
            V +GTL  ++R +A + + + G  V+  +S+KT+ ++  ++ G  K  KA++LGV  + 
Sbjct: 258 FVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLT 317

Query: 711 EEQFLFLLQQ 720
           E+    ++++
Sbjct: 318 EDGLFDMIRK 327


>gi|194898632|ref|XP_001978873.1| GG12593 [Drosophila erecta]
 gi|190650576|gb|EDV47831.1| GG12593 [Drosophila erecta]
          Length = 981

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+  G  KL  A++L + I++
Sbjct: 241 FVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILS 300

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 301 EDGLFDLIRE 310


>gi|258565361|ref|XP_002583425.1| hypothetical protein UREG_06392 [Uncinocarpus reesii 1704]
 gi|237907126|gb|EEP81527.1| hypothetical protein UREG_06392 [Uncinocarpus reesii 1704]
          Length = 729

 Score = 41.2 bits (95), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V+   S KT  +++G + G  KLE  ++ G+K ++
Sbjct: 31  FVFTGVLDALGREEGQALVKRYGGKVTTAPSSKTSYVVLGGDAGPKKLETIRKHGLKTID 90

Query: 711 EEQFLFLLQQ 720
           E     L+++
Sbjct: 91  EHGLFELIRK 100


>gi|218185964|gb|EEC68391.1| hypothetical protein OsI_36544 [Oryza sativa Indica Group]
          Length = 1014

 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710
            V +GTL  ++R +A + + + G  V+  +S+KT+ ++  ++ G  K  KA++LGV  + 
Sbjct: 260 FVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLT 319

Query: 711 EEQFLFLLQQ 720
           E+    ++++
Sbjct: 320 EDGLFDMIRK 329


>gi|115485959|ref|NP_001068123.1| Os11g0572100 [Oryza sativa Japonica Group]
 gi|108864532|gb|ABA94349.2| BRCA1 C Terminus domain containing protein, expressed [Oryza sativa
           Japonica Group]
 gi|113645345|dbj|BAF28486.1| Os11g0572100 [Oryza sativa Japonica Group]
 gi|215697840|dbj|BAG92033.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1021

 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710
            V +GTL  ++R +A + + + G  V+  +S+KT+ ++  ++ G  K  KA++LGV  + 
Sbjct: 267 FVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLT 326

Query: 711 EEQFLFLLQQ 720
           E+    ++++
Sbjct: 327 EDGLFDMIRK 336


>gi|313247250|emb|CBY15541.1| unnamed protein product [Oikopleura dioica]
          Length = 432

 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG  + + R + +  + + G   +  +S KT  +IVG+ PG SK++KA++  VK+++
Sbjct: 200 FVATGNGESLGRDEMKSLIQRYGGKFTTSVSGKTSYVIVGEEPGESKIKKAKEKAVKLVD 259

Query: 711 EEQFLFLLQ 719
           E+  L L++
Sbjct: 260 EDFILELIR 268


>gi|30314655|dbj|BAC76085.1| replication factor C 110 kDa subunit [Oryza sativa Japonica Group]
          Length = 1021

 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710
            V +GTL  ++R +A + + + G  V+  +S+KT+ ++  ++ G  K  KA++LGV  + 
Sbjct: 267 FVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLT 326

Query: 711 EEQFLFLLQQ 720
           E+    ++++
Sbjct: 327 EDGLFDMIRK 336


>gi|195568307|ref|XP_002102159.1| GD19753 [Drosophila simulans]
 gi|194198086|gb|EDX11662.1| GD19753 [Drosophila simulans]
          Length = 980

 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+  G  KL  A +L + I++
Sbjct: 242 FVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAMADELNIPILS 301

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 302 EDGLFDLIRE 311


>gi|302657732|ref|XP_003020581.1| hypothetical protein TRV_05323 [Trichophyton verrucosum HKI 0517]
 gi|291184429|gb|EFE39963.1| hypothetical protein TRV_05323 [Trichophyton verrucosum HKI 0517]
          Length = 1069

 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G    +  S KT  +++G++ G  KLE  Q+  +K +N
Sbjct: 331 FVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPKKLETIQKYKLKTIN 390

Query: 711 EEQFLFLLQQ 720
           E     L+++
Sbjct: 391 EGGLFELIRK 400


>gi|302509032|ref|XP_003016476.1| hypothetical protein ARB_04765 [Arthroderma benhamiae CBS 112371]
 gi|291180046|gb|EFE35831.1| hypothetical protein ARB_04765 [Arthroderma benhamiae CBS 112371]
          Length = 1073

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G    +  S KT  +++G++ G  KLE  Q+  +K +N
Sbjct: 332 FVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPKKLETIQKYKLKTIN 391

Query: 711 EEQFLFLLQQ 720
           E     L+++
Sbjct: 392 EGGLFELIRK 401


>gi|294932355|ref|XP_002780231.1| replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239890153|gb|EER12026.1| replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 829

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 14/86 (16%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEK 700
            K LVFTG L++++R  A       GA V+  +S +T  ++VG           GSK +K
Sbjct: 165 GKTLVFTGNLERLERDLAVTKAKLAGAKVTTAVSGRTTYLVVGSVLEDGRPIEEGSKFKK 224

Query: 701 AQQL------GVKIMNEEQFLFLLQQ 720
            Q+L      G  ++ E +F+  LQ+
Sbjct: 225 TQELRAAGKPGPSLLQESEFIEKLQK 250


>gi|296812349|ref|XP_002846512.1| replication factor C subunit 1 [Arthroderma otae CBS 113480]
 gi|238841768|gb|EEQ31430.1| replication factor C subunit 1 [Arthroderma otae CBS 113480]
          Length = 1056

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G       S KT  +++G++ G  KLE  ++  +K +N
Sbjct: 321 FVFTGVLDSLGREQGQNLVKKYGGKSMTAPSSKTSYVVLGNDAGPKKLETIKKYKLKTIN 380

Query: 711 EEQFLFLLQQ 720
           EE    L+++
Sbjct: 381 EEGLFELIRK 390


>gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium siraeum 70/3]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-------- 694
           V  E+ NK +  TG      + + QE ++++GA V + ++RKTDI+++G+          
Sbjct: 274 VDIELSNKSICLTGDFDYGSKQEVQERLSEIGATVVSNVTRKTDILLIGEKGSDSWACGT 333

Query: 695 -GSKLEKAQQL 704
            G+K +KA +L
Sbjct: 334 YGTKAKKAIEL 344


>gi|195497183|ref|XP_002095995.1| GE25440 [Drosophila yakuba]
 gi|194182096|gb|EDW95707.1| GE25440 [Drosophila yakuba]
          Length = 986

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            V TG L+ ++R +A+  + + G  V  ++ +K   +++G+  G  KL  A++L + I++
Sbjct: 241 FVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVIGEEAGPKKLAVAEELNIPILS 300

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 301 EDGLFDLIRE 310


>gi|238063265|ref|ZP_04607974.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
 gi|237885076|gb|EEP73904.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
          Length = 281

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 35/170 (20%)

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV----YKVDEFSLQKQLGERAR 320
           G  +     + N+    +S Y   +++ S  P  +  L+      VDE +   QL + AR
Sbjct: 23  GLTLEAAADEINSTRSTLSRYENAQTLIS--PATVRALLTLYGVSVDEIAAAVQLAKDAR 80

Query: 321 SPRWMISHKFAEKQASTRLLD-IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
            P W +S+ +   +   R +D I ++   TGI    A  EP  + G       L   DYI
Sbjct: 81  KPGWWVSYSYLLDR---RTIDFIALEAEATGI----ANFEPSVVPG------LLQTADYI 127

Query: 380 KGLDASGKVMRGG----RDIRVGDRVLVK-----RAGEVIPKVVDIIVNE 420
           +G      VMRGG     D +V  RV ++     R     P ++D I++E
Sbjct: 128 RG------VMRGGPHTLSDEQVEQRVHLRLDRQQRLTGDAPPILDAIIDE 171


>gi|296100338|ref|YP_003620507.1| hypothetical protein LKI_10796 [Leuconostoc kimchii IMSNU 11154]
 gi|295831655|gb|ADG39538.1| hypothetical protein LKI_10796 [Leuconostoc kimchii IMSNU 11154]
          Length = 93

 Score = 40.8 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 12/90 (13%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS--------K 697
           ++  + ++FTG L  + R +AQ+    LGA     +++K   +I G    S        K
Sbjct: 3   DLSQQPIIFTGKLNSLTRLQAQQLAAMLGAFPQTNMNQKIKYVIAGQIEQSMFEILTTKK 62

Query: 698 LEKAQQLGVKIMNEEQFL----FLLQQYNT 723
           ++ A+   V+I+NE +FL    + LQQ N+
Sbjct: 63  IKYAETHSVEILNESEFLKWCIWRLQQKNS 92


>gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47]
 gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage
           phi2958PVL]
 gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 132]
 gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47]
 gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL]
 gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 306

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 15/89 (16%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----------NPGSKLE 699
           K + FTG L+   R++  + VT +G+V  + + + T+ ++VG+             SK++
Sbjct: 213 KHVCFTGALKGFTRNEIAQTVTNIGSVYDSSVKKSTNYLVVGNLENLEKTHNYTKSSKIK 272

Query: 700 KAQQLG-----VKIMNEEQFLFLLQQYNT 723
           KA++L      ++I++E  FL LL  + +
Sbjct: 273 KAEKLSSEGQDIEILSEMDFLKLLTTFTS 301


>gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 303

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 14/91 (15%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------D 692
           N  S    + +VFTG L  + R +AQ+ +  +G ++   ++++TD ++VG         D
Sbjct: 213 NTESIFYGRTVVFTGALSSMVRAEAQQTIADIGGILGNGVTKETDFLVVGQQDYRVVGED 272

Query: 693 NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718
              SK +KA  L      ++I++E+ FL  L
Sbjct: 273 GMSSKQKKAISLIEKGSSLEILSEDDFLKCL 303


>gi|326469755|gb|EGD93764.1| replication factor C protein [Trichophyton tonsurans CBS 112818]
 gi|326485097|gb|EGE09107.1| replication factor C subunit 1 [Trichophyton equinum CBS 127.97]
          Length = 1060

 Score = 40.4 bits (93), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G    +  S KT  +++G++ G  KLE  Q+  +K +N
Sbjct: 323 FVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPKKLETIQKYKLKTIN 382

Query: 711 EEQFLFLLQQ 720
           E     L+++
Sbjct: 383 EGGLFELIRK 392


>gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040873|gb|ACT57669.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 119

 Score = 40.4 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +LS  +A  E+  L +   +H   YY+   P+  D  YD +  R DA+   FP+L   
Sbjct: 51  VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF-- 108

Query: 69  EDPNGPLNKIG 79
            D + P N +G
Sbjct: 109 -DEDHPWNTVG 118


>gi|227892034|ref|ZP_04009839.1| possible DNA polymerase III subunit epsilon [Lactobacillus
           salivarius ATCC 11741]
 gi|227866144|gb|EEJ73565.1| possible DNA polymerase III subunit epsilon [Lactobacillus
           salivarius ATCC 11741]
          Length = 95

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKL 698
           +NK +VFTG+LQ + R  A E +   G +V   +S++TD +++          +    K 
Sbjct: 10  KNKCVVFTGSLQSMLRKDAIEKINAAGGIVKNYVSKETDYLVIAPRQLDMFEEERKSKKQ 69

Query: 699 EKAQQLG-----VKIMNEEQFLFLLQ 719
             A+++      +KI++EE+FL +L+
Sbjct: 70  IAAEKINMNGGEIKIISEEKFLSMLK 95


>gi|269977446|ref|ZP_06184418.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|269934362|gb|EEZ90924.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
          Length = 303

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 15/84 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNPGS--------- 696
           +E +++VFTGTL+  +R   ++ V   G      L+++T +++VG  NP +         
Sbjct: 215 LEGERVVFTGTLKHGRRADVEQLVLAAGGATDKNLTKQTTLLVVGIPNPSAWKEGTSASR 274

Query: 697 KLEKAQQL-----GVKIMNEEQFL 715
           KL KA QL      +++++EE+F 
Sbjct: 275 KLMKASQLRDSGSPIEVISEEEFF 298


>gi|306819092|ref|ZP_07452806.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
 gi|304648068|gb|EFM45379.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
          Length = 305

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 15/84 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNPGS--------- 696
           +E +++VFTGTL+  +R   ++ V   G      L+++T +++VG  NP +         
Sbjct: 217 LEGERVVFTGTLKHGRRADVEQLVLAAGGATDKNLTKQTTLLVVGIPNPSAWKEGTSASR 276

Query: 697 KLEKAQQL-----GVKIMNEEQFL 715
           KL KA QL      +++++EE+F 
Sbjct: 277 KLMKASQLRDSGSPIEVISEEEFF 300


>gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254039808|gb|ACT56604.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|317120701|gb|ADV02524.1| DNA ligase [Liberibacter phage SC1]
 gi|317120744|gb|ADV02566.1| DNA ligase [Liberibacter phage SC2]
 gi|317120758|gb|ADV02579.1| DNA ligase [Liberibacter phage SC2]
 gi|317120805|gb|ADV02626.1| DNA ligase [Liberibacter phage SC1]
 gi|317120845|gb|ADV02666.1| DNA ligase [Candidatus Liberibacter asiaticus]
          Length = 119

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +LS  +A  E+  L +   +H   YY+   P+  D  YD +  R DA+   FP+L   
Sbjct: 51  VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELF-- 108

Query: 69  EDPNGPLNKIG 79
            D + P N +G
Sbjct: 109 -DEDHPWNTVG 118


>gi|168490120|ref|ZP_02714319.1| exonuclease family protein [Streptococcus pneumoniae SP195]
 gi|183571500|gb|EDT92028.1| exonuclease family protein [Streptococcus pneumoniae SP195]
          Length = 307

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 14/83 (16%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
             FTG L+++ R +A +    +G +    +++ T+I++VG         D   SK++KAQ
Sbjct: 225 FCFTGKLERMTRKEANKATALVGGIPEKGVTKHTNILVVGEQDWRVVGTDGLSSKMKKAQ 284

Query: 703 QL-----GVKIMNEEQFLFLLQQ 720
            L      ++IM E  F+ LL++
Sbjct: 285 TLLEKGQDIEIMTENDFIRLLEE 307


>gi|168494862|ref|ZP_02719005.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168494874|ref|ZP_02719017.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168495024|ref|ZP_02719167.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575147|gb|EDT95675.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575215|gb|EDT95743.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575301|gb|EDT95829.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
          Length = 307

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 14/83 (16%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
             FTG L+++ R +A +    +G +    +++ T+I++VG         D   SK++KAQ
Sbjct: 225 FCFTGKLERMTRKEANKATALVGGIPEKGVTKHTNILVVGEQDWRVVGTDGLSSKMKKAQ 284

Query: 703 QL-----GVKIMNEEQFLFLLQQ 720
            L      ++IM E  F+ LL++
Sbjct: 285 TLLEKGQDIEIMTENDFIRLLEE 307


>gi|242068901|ref|XP_002449727.1| hypothetical protein SORBIDRAFT_05g022200 [Sorghum bicolor]
 gi|241935570|gb|EES08715.1| hypothetical protein SORBIDRAFT_05g022200 [Sorghum bicolor]
          Length = 946

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710
            V +GTL  ++R +A + + + G  V+  +S+KT  ++  ++ G  K  KA+ LGV  + 
Sbjct: 256 FVISGTLDSLEREEATDLIKRYGGRVTGSISKKTSYLLADEDIGGVKSNKAKDLGVPFLT 315

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 316 EDGLFDLIRK 325


>gi|242049958|ref|XP_002462723.1| hypothetical protein SORBIDRAFT_02g030910 [Sorghum bicolor]
 gi|241926100|gb|EER99244.1| hypothetical protein SORBIDRAFT_02g030910 [Sorghum bicolor]
          Length = 1025

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710
            V +GTL  ++R +A + + + G  V+  +S+KT  ++  ++ G  K  KA+ LGV  + 
Sbjct: 271 FVISGTLDSLEREEAADLIKRYGGRVTGSISKKTSYLLADEDLGGVKSNKAKDLGVPFLT 330

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 331 EDGLFDLIRK 340


>gi|148986116|ref|ZP_01819102.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|149004079|ref|ZP_01828884.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147757891|gb|EDK64900.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147921830|gb|EDK72957.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799167|emb|CBW31680.1| unnamed protein product [Streptococcus pneumoniae OXC141]
          Length = 307

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 14/83 (16%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
             FTG L+++ R +A +    +G +    +++ T+I++VG         D   SK++KAQ
Sbjct: 225 FCFTGKLERMTRKEANKAAALVGGIPEKGVTKHTNILVVGEQDWRVVGTDGLSSKMKKAQ 284

Query: 703 QL-----GVKIMNEEQFLFLLQQ 720
            L      ++IM E  F+ LL++
Sbjct: 285 TLLEKGQDIEIMTENDFIRLLEE 307


>gi|328863808|gb|EGG12907.1| hypothetical protein MELLADRAFT_46497 [Melampsora larici-populina
           98AG31]
          Length = 937

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK-LEKAQQLGVKIMN 710
            VFTG L  + R +AQ    + G  V+   S KT  +++G + G+K LE   +  +  + 
Sbjct: 231 FVFTGELDSLSREEAQTLCKRYGGRVTTSPSSKTTYVVLGSDAGAKKLEVIAKHKITTLT 290

Query: 711 EEQFLFLL 718
           E++FL L+
Sbjct: 291 EDEFLELI 298


>gi|307166495|gb|EFN60580.1| Replication factor C subunit 1 [Camponotus floridanus]
          Length = 935

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            + TG    ++R +A+  + +        +S K + IIVGD  G +KL KA  LG+K ++
Sbjct: 238 FLLTGVFDSLERDEAEHLIRKYSGRTVNTVSGKVNYIIVGDEAGPAKLAKANSLGIKQIS 297

Query: 711 EEQFLFLLQ 719
           E+  L +++
Sbjct: 298 EDDLLEMIR 306


>gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 309

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 14/78 (17%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
           +VFTG L  + R +A   V +LG  V + +++KT  ++           D   +KL KA 
Sbjct: 226 VVFTGGLASMTRDEAIRLVRKLGGSVGSSVTKKTTYLVTNTKDIDNLHRDEMSTKLRKAV 285

Query: 703 QL-----GVKIMNEEQFL 715
            L     G+K +NEE FL
Sbjct: 286 DLKNKGQGIKCLNEEDFL 303


>gi|296083902|emb|CBI24290.3| unnamed protein product [Vitis vinifera]
          Length = 941

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMN 710
            V +GTL  ++R +A++ + + G  V+  +S+KT+ ++  ++  G+K  KA++LG   + 
Sbjct: 188 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNFLLCDEDIGGNKSAKAKELGTAFLT 247

Query: 711 EEQFLFLLQQYN 722
           E+    ++   N
Sbjct: 248 EDGLFDMICASN 259


>gi|302853225|ref|XP_002958129.1| DNA replication factor C complex subunit 1 [Volvox carteri f.
           nagariensis]
 gi|300256597|gb|EFJ40860.1| DNA replication factor C complex subunit 1 [Volvox carteri f.
           nagariensis]
          Length = 963

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  +  V TG L  + R +A++ + + G  V+  +S KT  ++VG N G  K   A+Q  
Sbjct: 219 LTGRTFVITGILDSLMRPEAEDLIKRHGGKVTKSVSGKTAFVVVGHNCGRGKYRDAKQHK 278

Query: 706 VKIMNEEQFLFLLQ 719
            K+++E+    LL+
Sbjct: 279 TKLIDEDGLFALLK 292


>gi|325118994|emb|CBZ54546.1| putative replication factor c subunit [Neospora caninum Liverpool]
          Length = 1128

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 18/92 (19%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGS 696
           S    K  VFTG L  + R +A   V   G   ++ +S KTD ++ G           GS
Sbjct: 444 SSFAGKTFVFTGVLDSMGRDEAVAAVVGNGGRCTSAVSGKTDYLVAGSLLEDGRDVTTGS 503

Query: 697 KLEKAQQL----------GVKIMNEEQFLFLL 718
           K  KA QL           +KI++E++FL +L
Sbjct: 504 KYRKALQLMQDGSAKQKASLKILHEQEFLAML 535


>gi|194746572|ref|XP_001955754.1| GF18917 [Drosophila ananassae]
 gi|190628791|gb|EDV44315.1| GF18917 [Drosophila ananassae]
          Length = 982

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            + TG L+ ++R +A+  + + G  V  ++ +K   ++VG+  G  KL  A++L + I++
Sbjct: 255 FLVTGVLESMEREEAESVIKEYGGRVMTVVGKKLQYLVVGEEAGPKKLAVAEELNIPILS 314

Query: 711 EEQFLFLLQQ 720
           E+    L+++
Sbjct: 315 EDGLFDLIRE 324


>gi|6739583|gb|AAF27316.1| unknown [Lactococcus lactis]
          Length = 98

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 14/89 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQL-GAVVSAILSRKTDII--------IVGDNPGSK 697
           +EN+  VFTGTL  + R +AQ  ++ L G   S++  + T ++        I G +P  K
Sbjct: 2   LENEYFVFTGTLTTMTRKQAQAIISGLEGHNQSSVTKKTTRLVTGYFPIDLIKGYSPSQK 61

Query: 698 LEKAQQL-----GVKIMNEEQFLFLLQQY 721
           L +A+Q       + IM+E++F+  L Q+
Sbjct: 62  LTEAEQAIESGQPLIIMSEKEFVDFLAQF 90


>gi|225435884|ref|XP_002265891.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 921

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMN 710
            V +GTL  ++R +A++ + + G  V+  +S+KT+ ++  ++  G+K  KA++LG   + 
Sbjct: 176 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNFLLCDEDIGGNKSAKAKELGTAFLT 235

Query: 711 EEQFLFLLQQYN 722
           E+    ++   N
Sbjct: 236 EDGLFDMICASN 247


>gi|325109435|ref|YP_004270503.1| BRCT domain protein [Planctomyces brasiliensis DSM 5305]
 gi|324969703|gb|ADY60481.1| BRCT domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 465

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 14/87 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------PGSK 697
           +E + +  TGTL  +   +A E + + G V +  +SR+T ++++G+          P  K
Sbjct: 66  LEGESVAITGTLASMTHDQAAEQIQRHGGVTTTHVSRQTTMLVIGEEGWPLESDGKPSQK 125

Query: 698 LEKAQQL-----GVKIMNEEQFLFLLQ 719
           L+ AQ L      ++I+ E  +L +L+
Sbjct: 126 LQAAQALIDDGHSLRIVPETDWLRMLE 152


>gi|255079352|ref|XP_002503256.1| predicted protein [Micromonas sp. RCC299]
 gi|226518522|gb|ACO64514.1| predicted protein [Micromonas sp. RCC299]
          Length = 306

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +S I+NK +V  GTL  + R  A+  +T  G      ++ KT++I++G +  S LEKA++
Sbjct: 187 ASRIKNKCVVLVGTLHGMSRADAKTAITAAGGHWRDTITCKTELIVLGLSKPSALEKAEE 246


>gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 345

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692
           P+ GR+E      ++  ++ F+G     +R   ++  T+ G  V+  LSR T +++  D 
Sbjct: 252 PNPGRYEPG-GRLVQGMRIAFSGD-TSTERDLLEDRATEAGLHVATSLSRLTSLLVTNDP 309

Query: 693 -NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  SK  KA+Q G  +++E  F  LLQ
Sbjct: 310 DSGTSKTVKARQFGTPVVDEAAFGQLLQ 337


>gi|254431865|ref|ZP_05045568.1| DNA ligase [Cyanobium sp. PCC 7001]
 gi|197626318|gb|EDY38877.1| DNA ligase [Cyanobium sp. PCC 7001]
          Length = 41

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S+KT  ++ G+  GSKL KA+ LGV +++E   L LL
Sbjct: 1   MSKKTSYVVAGEEAGSKLTKAESLGVAVLDEAGLLALL 38


>gi|71652419|ref|XP_814867.1| proteasome regulatory non-ATPase subunit 11 [Trypanosoma cruzi
           strain CL Brener]
 gi|70879876|gb|EAN93016.1| proteasome regulatory non-ATPase subunit 11, putative [Trypanosoma
           cruzi]
          Length = 264

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           SGEDV          PR +S+ I  I  VRG+V I  + F    D ++  GR  Y  PR 
Sbjct: 124 SGEDVMTAGNYEQLTPRSVSVVIDPIQSVRGKVVI--DAFRTTKDALMG-GRNMYEEPRQ 180

Query: 219 AAS--GILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
             S  G L R +P  +TR L+   + L  T   F K  +E+
Sbjct: 181 TTSNLGWLTRPSPVALTRGLDRDYYSLAIT---FRKKNHEL 218


>gi|242809058|ref|XP_002485290.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218715915|gb|EED15337.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1207

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 21/197 (10%)

Query: 95  TLSLEKIWNI--EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
           T+S E +W I  +  R    R   F  +        +L+P++ G  I +R    KF    
Sbjct: 584 TISKEVLWRIYRDYPRNAAVRPTVFQVRISGAKGMLSLDPRLKGPTICLRDSMIKF---- 639

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
                 +  ++  C   I ++P  L+  + +I+E  G   ++++ FL L  E +   R  
Sbjct: 640 ---RAEADHNIEICGSGIHSLPCYLNAPLIKILEDLG---VARDLFLELQREEVQNLRLA 693

Query: 213 YANPRNAASGILRRLNPTDITRYLNFFV-----HGLGKTSEIFAKGQYEM--LQKMRCLG 265
             +PR AAS  L + + T  TR L++ +      GL    + F K   E+  L K+R L 
Sbjct: 694 IRSPRQAAS-FLDQAHITKSTR-LSWLITVLQSMGLNYNQDKFLKRAVELVILMKLRDLK 751

Query: 266 FPVNNGVRQANTFHGIV 282
           +     V +A T +GI+
Sbjct: 752 YRARILVPEAVTLYGIM 768


>gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
 gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
          Length = 282

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
           + V +G  Q   R + Q+ + Q G  ++  +S  T+ ++ G   G SKL KA+  G K++
Sbjct: 211 RFVISGNFQHFSRIEMQKIIVQNGGRITGSVSGLTNYLVCGSQAGNSKLSKAKLNGTKLI 270

Query: 710 NEEQFLFLL 718
           +E Q L +L
Sbjct: 271 SENQLLEIL 279


>gi|224372066|ref|YP_002606231.1| predicted type III DNA polymerase PolC [Desulfobacterium
           autotrophicum HRM2]
 gi|223694785|gb|ACN18067.1| predicted type III DNA polymerase PolC [Desulfobacterium
           autotrophicum HRM2]
          Length = 290

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
           E N   E+  + +VFTG L  I R  A      +G  V+  +S+K D ++VGD   S+L
Sbjct: 192 EGNPEGELYGQSVVFTGALS-IPRKDAAAMAASIGCSVAPTVSKKIDYLVVGDQDASRL 249


>gi|15644408|ref|NP_229460.1| hypothetical protein TM1660 [Thermotoga maritima MSB8]
 gi|148270261|ref|YP_001244721.1| peptidase M23B [Thermotoga petrophila RKU-1]
 gi|170288958|ref|YP_001739196.1| peptidase M23 [Thermotoga sp. RQ2]
 gi|4982235|gb|AAD36727.1|AE001808_2 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|147735805|gb|ABQ47145.1| peptidase M23B [Thermotoga petrophila RKU-1]
 gi|170176461|gb|ACB09513.1| Peptidase M23 [Thermotoga sp. RQ2]
          Length = 323

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 25/145 (17%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPI----------ILDSEYDALKRRCDAIAHAFP 63
           I  A  E+    +E+SY    +    KP+          I DS YD ++ R    +  FP
Sbjct: 151 IPHAHFEIRDRNEEVSYDPSTFLNLPKPVDEDIVLEKIKIGDSVYDFVEGRTYPFSGNFP 210

Query: 64  DLARSEDPNGPLNKIG-GEMNLSL-----FKVTH-SIPTLSLEKIWNIEDLRKFITRIYR 116
           DLA      G  N +G  +++L L     ++++   IP      +W + D RK ++  YR
Sbjct: 211 DLAIKAYSKGFNNTLGLKKISLLLEGEEIYQISFDQIPWSEFTNVWGVYD-RKSVSAAYR 269

Query: 117 FWQKKDDNSIFFTLEPKIDGTMITI 141
           F        +++ L P+   +MI +
Sbjct: 270 F-------ELWYKLFPETFSSMIKV 287


>gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 324

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692
           P+ GR+E      ++  ++ F+G     +R   ++  T+ G  V+  LSR T +++  D 
Sbjct: 231 PNPGRYEPG-GRLVQGMRIAFSGD-TSTERDLLEDRATEAGLHVATSLSRLTSLLVTNDP 288

Query: 693 -NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  SK  KA+Q G  +++E  F  LLQ
Sbjct: 289 DSGTSKTVKARQFGTPVVDEAAFGQLLQ 316


>gi|239995022|ref|ZP_04715546.1| NAD-dependent DNA ligase [Alteromonas macleodii ATCC 27126]
          Length = 70

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
          S+EQA++++ +L   ++ ++  YY    P + D+ YD   +   A+   +P L   + PN
Sbjct: 4  SLEQAKQQIETLRNTLNEYNYQYYVMDDPSVPDAVYDRDMQALIALEKQYPTL---QSPN 60

Query: 73 GPLNKIGG 80
           P  K+GG
Sbjct: 61 SPSQKVGG 68


>gi|169865629|ref|XP_001839413.1| purine nucleotide binding protein [Coprinopsis cinerea
           okayama7#130]
 gi|116499532|gb|EAU82427.1| purine nucleotide binding protein [Coprinopsis cinerea
           okayama7#130]
          Length = 920

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L    R +A +   + G  V    S KTD +++G++ G  KLE  ++  +  ++
Sbjct: 240 FVFTGELTAFSRDEAVDLAKRFGGRVVGQPSSKTDYVVLGEDAGPKKLEAIKKHKLNTLD 299

Query: 711 EEQFLFLL 718
           E+ FL L+
Sbjct: 300 EDGFLNLI 307


>gi|71409524|ref|XP_807104.1| proteasome regulatory non-ATPase subunit 11 [Trypanosoma cruzi
           strain CL Brener]
 gi|70871027|gb|EAN85253.1| proteasome regulatory non-ATPase subunit 11, putative [Trypanosoma
           cruzi]
          Length = 363

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           SGEDV          PR +S+ I  I  VRG+V I  + F    D ++  GR  Y  PR 
Sbjct: 177 SGEDVMTAGNYEQLTPRSVSVVIDPIQSVRGKVVI--DAFRTTKDALMG-GRNMYEEPRQ 233

Query: 219 AAS--GILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
             S  G L R +P  +TR L+   + L  T   F K  +E+
Sbjct: 234 TTSNLGWLTRPSPVALTRGLDRDYYSLAIT---FRKKNHEL 271


>gi|328464330|gb|EGF35747.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus MTCC 5462]
          Length = 47

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           +TD++I GD  GSKL KAQ L V IM+E   L
Sbjct: 11  ETDLVIAGDAAGSKLTKAQDLNVPIMDETALL 42


>gi|322821155|gb|EFZ27559.1| proteasome regulatory non-ATPase subunit 11, putative [Trypanosoma
           cruzi]
          Length = 310

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           SGEDV          PR +S+ I  I  VRG+V I  + F    D ++  GR  Y  PR 
Sbjct: 124 SGEDVMTAGNYEQLTPRSVSVVIDPIQSVRGKVVI--DAFRTTKDALMG-GRNMYEEPRQ 180

Query: 219 AAS--GILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
             S  G L R +P  +TR L+   + L  T   F K  +E+
Sbjct: 181 TTSNLGWLTRPSPVALTRGLDRDYYSLAIT---FRKKNHEL 218


>gi|327303742|ref|XP_003236563.1| chromosome transmission fidelity factor [Trichophyton rubrum CBS
           118892]
 gi|326461905|gb|EGD87358.1| chromosome transmission fidelity factor [Trichophyton rubrum CBS
           118892]
          Length = 1058

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G    +  S KT  +++G++ G  KLE  Q+  ++ +N
Sbjct: 321 FVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPKKLETIQKYKLRTIN 380

Query: 711 EEQFLFLLQQ 720
           E     L+++
Sbjct: 381 EGGLFELIRK 390


>gi|158336878|ref|YP_001518053.1| hypothetical protein AM1_3746 [Acaryochloris marina MBIC11017]
 gi|158307119|gb|ABW28736.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 1187

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 40/66 (60%)

Query: 653  VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            V TG L ++   + +  + + G  ++   S KT  ++VG +PG+KL+KA++  +  ++E+
Sbjct: 1116 VITGKLAQLSYEQVKTIIQEAGGTINTHPSSKTSYVVVGKDPGNKLKKAEKYSIPQLSEQ 1175

Query: 713  QFLFLL 718
            Q + LL
Sbjct: 1176 QLMELL 1181


>gi|281412567|ref|YP_003346646.1| Peptidase M23 [Thermotoga naphthophila RKU-10]
 gi|281373670|gb|ADA67232.1| Peptidase M23 [Thermotoga naphthophila RKU-10]
          Length = 323

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 31/148 (20%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPI----------ILDSEYDALKRRCDAIAHAFP 63
           I  A  E+    +E+SY    +    KP+          I DS YD ++ R    +  FP
Sbjct: 151 IPHAHFEIRDRNEEVSYDPSTFLNLPKPVDEDIVLEKIKIGDSVYDFVEGRTYPFSGNFP 210

Query: 64  DLARSEDPNGPLNKIG---------GEMNLSLFKVTH-SIPTLSLEKIWNIEDLRKFITR 113
           DLA      G  N +G         GE    +++++   IP      +W + D RK ++ 
Sbjct: 211 DLAIKAYSKGFNNTLGLKRITLLLEGE---EIYQISFDQIPWSEFTNVWGVYD-RKSVSA 266

Query: 114 IYRFWQKKDDNSIFFTLEPKIDGTMITI 141
            YRF        +++ L P+   +MI +
Sbjct: 267 AYRF-------ELWYRLFPETFSSMIKV 287


>gi|224054238|ref|XP_002298160.1| predicted protein [Populus trichocarpa]
 gi|222845418|gb|EEE82965.1| predicted protein [Populus trichocarpa]
          Length = 550

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMN 710
            V +GTL  ++R +A++ + + G  V+  +S+KT  ++  ++  G K  KA++LG   + 
Sbjct: 209 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTSYLLCDEDIEGRKSSKAKELGTPFLT 268

Query: 711 EEQ-FLFLLQQYNTTLRIHDD 730
           E+  F  +L   N+     +D
Sbjct: 269 EDGLFDKILSSKNSKAPARED 289


>gi|320035705|gb|EFW17646.1| chromosome transmission fidelity factor [Coccidioides posadasii
           str. Silveira]
          Length = 1045

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V+   S KT  +++G + G  KLE  ++  +K +N
Sbjct: 305 FVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDAGPKKLETIRKHNLKTIN 364

Query: 711 EEQFLFLLQQ 720
           E     L+++
Sbjct: 365 EYGLFELIRK 374


>gi|119190369|ref|XP_001245791.1| hypothetical protein CIMG_05232 [Coccidioides immitis RS]
          Length = 1068

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V+   S KT  +++G + G  KLE  ++  +K +N
Sbjct: 328 FVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDAGPKKLETIRKHNLKTIN 387

Query: 711 EEQFLFLLQQ 720
           E     L+++
Sbjct: 388 EYGLFELIRK 397


>gi|303315067|ref|XP_003067541.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107211|gb|EER25396.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 1068

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            VFTG L  + R + Q  V + G  V+   S KT  +++G + G  KLE  ++  +K +N
Sbjct: 328 FVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDAGPKKLETIRKHNLKTIN 387

Query: 711 EEQFLFLLQQ 720
           E     L+++
Sbjct: 388 EYGLFELIRK 397


>gi|295133972|ref|YP_003584648.1| NAD-dependent DNA ligase [Zunongwangia profunda SM-A87]
 gi|294981987|gb|ADF52452.1| NAD-dependent DNA ligase [Zunongwangia profunda SM-A87]
          Length = 148

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 640 EKNVSSEIEN----KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
           +    SEIEN    KK+VF G L        +  +    A+V   ++  T+ +I G NP 
Sbjct: 39  DTKADSEIENGFEGKKVVFDGELDAYIEENIKNELRNKHAIVEDKMAEDTNFLITGKNPD 98

Query: 696 -SKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
              +E+A+ LGV I NE  +   + +  T L
Sbjct: 99  WLVVEEAKDLGVTIFNEMDWQNTVHKIETNL 129


>gi|306824811|ref|ZP_07458155.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304433022|gb|EFM35994.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 93

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 7/81 (8%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------NPGSKLE 699
           ++  K +V TG+L+ + R ++  ++   GAVV + +S KTDI+++G       +P  K  
Sbjct: 2   DLTGKNIVITGSLRPLTREESIRFLESKGAVVQSYVSNKTDILVLGHKQLNLFDP-DKRS 60

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           K     ++ ++E QF+  L +
Sbjct: 61  KKHDAALRRISEGQFITFLSE 81


>gi|237839249|ref|XP_002368922.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
 gi|211966586|gb|EEB01782.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
          Length = 1260

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 18/89 (20%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEKA 701
           K  VFTG L  + R +A   V   G   ++ +S +TD ++ G           GSK  KA
Sbjct: 470 KTFVFTGVLDSMAREEAVSAVVGNGGRCTSAVSGRTDYLVAGALLEDGRDVTTGSKYRKA 529

Query: 702 QQL----------GVKIMNEEQFLFLLQQ 720
            QL           +KI++E++FL +L +
Sbjct: 530 LQLMHDGKGKQKTSLKILHEQEFLAMLPE 558


>gi|301111033|ref|XP_002904596.1| replication factor C subunit 1 [Phytophthora infestans T30-4]
 gi|262095913|gb|EEY53965.1| replication factor C subunit 1 [Phytophthora infestans T30-4]
          Length = 770

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 15/116 (12%)

Query: 629 LKEVSPSIGRHE---KNV----SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           + EV P   + E   K V    S  ++ K   F+G L+ + R  A   V   G  V+  +
Sbjct: 64  MPEVKPEAKKEEGALKKVPAPCSGCLDGKTFAFSGVLESLSREDAVHLVKSCGGSVANSI 123

Query: 682 SRKTDIIIVGD--------NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           +R T  +++G           GSK ++A    V+I+ + +F  L+ +  T  +  D
Sbjct: 124 TRSTKYLVIGSTLEQGGNVTDGSKYKEAVAKNVRILTQNEFYNLITEAATAQQTQD 179


>gi|221507917|gb|EEE33504.1| replication factor C subunit, putative [Toxoplasma gondii VEG]
          Length = 1260

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 18/89 (20%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEKA 701
           K  VFTG L  + R +A   V   G   ++ +S +TD ++ G           GSK  KA
Sbjct: 470 KTFVFTGVLDSMAREEAVSAVVGNGGRCTSAVSGRTDYLVAGALLEDGRDVTTGSKYRKA 529

Query: 702 QQL----------GVKIMNEEQFLFLLQQ 720
            QL           +KI++E++FL +L +
Sbjct: 530 LQLMHDGKGKQKTSLKILHEQEFLAMLPE 558


>gi|221483441|gb|EEE21760.1| replication factor C subunit, putative [Toxoplasma gondii GT1]
          Length = 1260

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 18/89 (20%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEKA 701
           K  VFTG L  + R +A   V   G   ++ +S +TD ++ G           GSK  KA
Sbjct: 470 KTFVFTGVLDSMAREEAVSAVVGNGGRCTSAVSGRTDYLVAGALLEDGRDVTTGSKYRKA 529

Query: 702 QQL----------GVKIMNEEQFLFLLQQ 720
            QL           +KI++E++FL +L +
Sbjct: 530 LQLMHDGKGKQKTSLKILHEQEFLAMLPE 558


>gi|239629265|ref|ZP_04672296.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239528470|gb|EEQ67471.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 94

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 8/82 (9%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQ 703
           ++  K+++FTG L+  +R +AQ+  T LGA     + +K DI++VG    P  +L   Q+
Sbjct: 3   DLRGKRILFTGRLRSFRRFQAQQLATILGAKPVNGIDKKVDILVVGIISKPYDQLLTTQK 62

Query: 704 L------GVKIMNEEQFLFLLQ 719
           L      G+  ++E  F+   Q
Sbjct: 63  LTYARTYGIPKIDELAFISWCQ 84


>gi|320590089|gb|EFX02534.1| nucleoporin [Grosmannia clavigera kw1407]
          Length = 1320

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 4/134 (2%)

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL-GKQQLDFFFKSED 499
           + RD +P TG +V +   TG L    + LERL+ F+  +A +I+GL G   L    + E+
Sbjct: 677 ITRDFSP-TGVVVKSTVPTGELTIVQENLERLRTFLKVNAGSIQGLSGPADLRRTTRHEE 735

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF-SLG 558
            A      A +  LQ+  ++ +  I  +L   D  V+++Y  ++      L    + SL 
Sbjct: 736 IALQAEHQA-LHALQKLMESISEGISFVLMLFDERVSDIYVRMDDSTRQELRSLTYESLF 794

Query: 559 IRHVGAEIARSLAK 572
            +  G ++A+ L K
Sbjct: 795 SKPEGKQLAKLLVK 808


>gi|307197038|gb|EFN78410.1| Replication factor C subunit 1 [Harpegnathos saltator]
          Length = 1045

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
            + TG  + ++R++ ++ +   G  +   +S K + I+VGD  G +KL KA  L +K + 
Sbjct: 338 FLTTGVFESLERNEVEDLIKNYGGRIVNSVSSKVNYIMVGDEAGPAKLAKANTLSIKQIT 397

Query: 711 EEQFLFLLQ 719
           E+  L +++
Sbjct: 398 EDDLLEMIR 406


>gi|189490483|ref|YP_001957053.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
 gi|164609548|gb|ABY63157.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
          Length = 308

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 49/244 (20%), Positives = 93/244 (38%), Gaps = 34/244 (13%)

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H  P L  +    +  +R ++ ++         ++I   + P  +G  + + Y+ G    
Sbjct: 80  HDFPVLDYKPATTLMHVRNWLAKV----DCDYTDNIDIIMTPYYNGCRVELVYQGGSLHK 135

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
           A  +G G  G D +     +  IP+ +  N  E I +RG +  + N     +++ +    
Sbjct: 136 AITKGGGIMGTDFTMNAYLVEGIPQQILDN--ERISIRGVITSTLNHVWGEDEKRVI--- 190

Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
                     S  L    PT+I   LN+ V       +    G     + +R +    + 
Sbjct: 191 ----------SASLMSTEPTNIN--LNYLVF---VPDDWHVPGAMLNTKDLRSISLAWDM 235

Query: 271 GVRQANTFHGI---VSYYNEM-----KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
                ++F G    + Y  E      K I+S +PY   G+++ VD    + +LG  +  P
Sbjct: 236 EPAGMDSFPGQYKEIGYLEEKIETFRKEIKSKIPYS--GILFTVDSLGRKMELGYTSIHP 293

Query: 323 RWMI 326
            W I
Sbjct: 294 EWAI 297


>gi|303290318|ref|XP_003064446.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454044|gb|EEH51351.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 370

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 10/87 (11%)

Query: 646 EIENKKLVFTGTLQKIQ--------RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-S 696
           ++  K +V TG   ++         + KA+    Q G  V+  +S +TD+++VG  PG S
Sbjct: 223 QLAGKTIVLTGVFPELGGGCGLNLGKDKARRLCEQFGGRVTTAVSGRTDLLLVGSEPGAS 282

Query: 697 KLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           K+ KA+   G  +MN +Q    L   N
Sbjct: 283 KVAKARSTPGCMLMNIDQLREQLTAGN 309


>gi|33322833|gb|AAQ07152.1|AF496462_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis]
          Length = 69

 Score = 38.1 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E +
Sbjct: 4   LGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAE 44


>gi|302887488|ref|XP_003042632.1| hypothetical protein NECHADRAFT_42353 [Nectria haematococca mpVI
            77-13-4]
 gi|256723544|gb|EEU36919.1| hypothetical protein NECHADRAFT_42353 [Nectria haematococca mpVI
            77-13-4]
          Length = 2515

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 14/103 (13%)

Query: 381  GLDASGKVMRGG---RDIRVGDRVLVKRAGEVIPKVVDIIVNERH----PDAQPFSFPSF 433
            GL+A+G V R G   +D+RVGDRV++   G        II +E+     PD   F   + 
Sbjct: 1851 GLEATGVVTRLGPDVKDLRVGDRVILFSRGSF---STSIITSEKLCEVIPDELSFEEGAT 1907

Query: 434  CPICQSRVVRDL----NPKTGKLVAAHRCTGGLACSAQQLERL 472
             P   +  +  L      K G+ V  H   GG+  +A Q+ R+
Sbjct: 1908 MPCVYATAIYSLIDIGGLKRGQSVLIHSACGGVGIAAIQVARM 1950


>gi|78779078|ref|YP_397190.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9312]
 gi|78712577|gb|ABB49754.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9312]
          Length = 249

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 84/207 (40%), Gaps = 41/207 (19%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +EPKIDG  + ++Y  G    A  R     G DV+  +  +  IP  L L    +++VRG
Sbjct: 76  IEPKIDGCAVALQYRDGILEKAISR----KGTDVTTKLIKVQDIPNHLPLR--GVLQVRG 129

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+Y              A  + P  + R  ASG LR          L+F    +  ++  
Sbjct: 130 ELY--------------ASNQTPNISQR-MASGYLR--AKEGFPERLSFCAFQILNST-- 170

Query: 250 FAKGQYEMLQKMRCLGFPV-----NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
               QYE  + +  LGF +      N   Q   F      + E K  R    Y  DG+V 
Sbjct: 171 --LNQYESKKSLSELGFTIPQDISCNFTSQVQVFR---KQWIEGKLFRE---YPTDGIVV 222

Query: 305 KVDEFSLQKQLGERAR--SPRWMISHK 329
           K++   LQ  + E++    P W ++ K
Sbjct: 223 KINSRKLQ-LIREKSNLDYPYWQVAIK 248


>gi|301093002|ref|XP_002997350.1| replication factor C subunit, putative [Phytophthora infestans
           T30-4]
 gi|262110748|gb|EEY68800.1| replication factor C subunit, putative [Phytophthora infestans
           T30-4]
          Length = 893

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKL 698
           ++ K   F+G L+ + R  A   V   G  ++  ++R T  +++G           GSK 
Sbjct: 212 LDGKTFAFSGVLESLSREDAVHLVKSCGGSIAISITRSTKYLVIGSTLEQGGNVTDGSKY 271

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           ++A    V+I+ + +F  L+ +  T  +  D
Sbjct: 272 KEAVAKNVRILTQNEFYNLITEAATAQQTQD 302


>gi|319654072|ref|ZP_08008164.1| hypothetical protein HMPREF1013_04784 [Bacillus sp. 2_A_57_CT2]
 gi|317394265|gb|EFV75011.1| hypothetical protein HMPREF1013_04784 [Bacillus sp. 2_A_57_CT2]
          Length = 91

 Score = 37.7 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 13/86 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNP-------GSKL 698
           ++ +  VF+G +  + R +A + V   G +    +++ T  ++VG +NP        +KL
Sbjct: 6   LKGEVFVFSGKMHTLLRKEAIKEVLIRGGICEENVTKNTTYLVVGIENPEAIKRNVSTKL 65

Query: 699 EKAQQ-----LGVKIMNEEQFLFLLQ 719
            KA++     + +KI+NEE+FL LL+
Sbjct: 66  GKAEEYNAAGISIKIINEEEFLNLLR 91


>gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
          Length = 306

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 14/82 (17%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKL 698
           +N+ +VFTG L  + R +A   V  LG    + ++RKT I++           +   +KL
Sbjct: 222 KNEVVVFTGRLDSMPRDEAMGLVRVLGGTTGSSVTRKTTILVTNMKDAKDLRREEMSTKL 281

Query: 699 EKAQQLGVK-----IMNEEQFL 715
           ++A  L +K      +NE++FL
Sbjct: 282 KRAVDLNIKGQNIRFLNEDEFL 303


>gi|163735140|ref|ZP_02142576.1| Exonuclease [Roseobacter litoralis Och 149]
 gi|161391598|gb|EDQ15931.1| Exonuclease [Roseobacter litoralis Och 149]
          Length = 287

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 15/94 (15%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN------ 693
           + N    +  + +VFTG L+ I R +A +    +G  V A +++KT +++VGD       
Sbjct: 191 DGNPDGALAGEVVVFTGALE-IPRREAADLAASIGCSVGASVTKKTTLLVVGDTDVARLA 249

Query: 694 ---PGSKLEKAQQLGVK-----IMNEEQFLFLLQ 719
                SK  KA+ L  K     I+ E  F  L++
Sbjct: 250 GHAKSSKHRKAEDLAAKGVPIRIIRETDFRELVE 283


>gi|153816808|ref|ZP_01969475.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126512611|gb|EAZ75205.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
          Length = 166

 Score = 37.7 bits (86), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702
           +SE ++ ++ FTG   K+ +   +E       +V   ++   DI+  G N G  KLEKA 
Sbjct: 83  ASEQDSLQVCFTG-FNKLDKAALKELAANNNMIVRKEVTVYLDILCYGINAGPKKLEKAM 141

Query: 703 QLGVKIMNEEQF 714
           + GV I+N EQF
Sbjct: 142 EQGVMILNREQF 153


>gi|145483437|ref|XP_001427741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394824|emb|CAK60343.1| unnamed protein product [Paramecium tetraurelia]
          Length = 807

 Score = 37.4 bits (85), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--------PGSKLEKAQQ 703
           +V +G L    R K ++++   GA V+  +S KT+ +IVGD          G+K ++A +
Sbjct: 112 IVLSGILNVCSRDKFEQFLKNNGAKVTGSVSGKTNYLIVGDKLEDGRKGEEGNKFKEATK 171

Query: 704 LGVKIMNEEQF 714
            G KI+ E + 
Sbjct: 172 KGTKIIRENEL 182


>gi|294656132|ref|XP_458382.2| DEHA2C15994p [Debaryomyces hansenii CBS767]
 gi|199430883|emb|CAG86464.2| DEHA2C15994p [Debaryomyces hansenii]
          Length = 915

 Score = 37.4 bits (85), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           ++FTG L +++R  A+    + GA V+  +S KT ++++G+  G SK++K ++  +K + 
Sbjct: 222 MIFTGILPRLERTVAENLAKKYGAKVTKSISGKTSLVVIGEEAGPSKVQKIKKNKIKAIT 281

Query: 711 EEQFLFLLQ 719
           E+ F+ LLQ
Sbjct: 282 EDGFIQLLQ 290


>gi|154416257|ref|XP_001581151.1| transcription factor [Trichomonas vaginalis G3]
 gi|121915376|gb|EAY20165.1| transcription factor, putative [Trichomonas vaginalis G3]
          Length = 687

 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIM 709
            V TGT+  ++R + ++ +T+ G  V++ +S KTD ++VG  +    K++  ++  +  +
Sbjct: 55  FVPTGTMVSLKREQVKDLITKYGGKVTSSISGKTDCVVVGCIEVGPKKIQTCREKNIPTI 114

Query: 710 NEEQFLFLL 718
           +E+   +L+
Sbjct: 115 DEDGLFYLI 123


Searching..................................................done


Results from round 2




>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040849|gb|ACT57645.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 731

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 731/731 (100%), Positives = 731/731 (100%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH
Sbjct: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK
Sbjct: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN
Sbjct: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240
           IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV
Sbjct: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID
Sbjct: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP
Sbjct: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE
Sbjct: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA
Sbjct: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD
Sbjct: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR
Sbjct: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK
Sbjct: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ
Sbjct: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720

Query: 721 YNTTLRIHDDD 731
           YNTTLRIHDDD
Sbjct: 721 YNTTLRIHDDD 731


>gi|86358438|ref|YP_470330.1| NAD-dependent DNA ligase LigA [Rhizobium etli CFN 42]
 gi|123738303|sp|Q2K6D3|DNLJ_RHIEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86282540|gb|ABC91603.1| DNA ligase (NAD+) protein [Rhizobium etli CFN 42]
          Length = 718

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/712 (47%), Positives = 492/712 (69%), Gaps = 5/712 (0%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VETLTIEEAAAELERLAREIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  ---DSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRMPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+   AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLTTAATRGDGTTGENVTANIRTIAEIPNQLPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ S
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           ++ A  Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD
Sbjct: 245 DMPADTQFAMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLKRPDLDYDIDGVVYKVD 304

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ++LG R+RSPRW  +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+ +GG +
Sbjct: 305 SLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364

Query: 368 ITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +TNATLHNEDYIKG+  SG+ +R    DIR GD V+V+RAG+VIP+++D+++ +R  + +
Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRLAEVK 424

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP+C S  VR++N KTGK+ +  RCTGG  C AQ  E LKHFVSR+AF+IEGL
Sbjct: 425 PYEFPKICPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+DFFF++EDP+  IR   +IFTL++RQQ S TK+ENI GFG VSV  LY +IN+RR
Sbjct: 485 GSKQIDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAINERR 544

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + D W  L  +  +G+
Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNAIEGIGE 604

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+A+VEFY+ PRN+  +  LL EV+P+         S +  K +VFTG+L+K  R +A
Sbjct: 605 VVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFTRDEA 664

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716


>gi|222149123|ref|YP_002550080.1| NAD-dependent DNA ligase LigA [Agrobacterium vitis S4]
 gi|254781248|sp|B9JY41|DNLJ_AGRVS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221736108|gb|ACM37071.1| DNA ligase [Agrobacterium vitis S4]
          Length = 719

 Score =  870 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/716 (48%), Positives = 478/716 (66%), Gaps = 6/716 (0%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           LIP+E LS EQA +EL  L   I++HD  Y+   +P I D++YDALKRR DAI   FP L
Sbjct: 5   LIPVEDLSEEQAGQELIRLAAAIAHHDALYHGKDQPEISDADYDALKRRNDAIEARFPTL 64

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            RS   + P  ++G        ++TH+ P LSL+  ++ ED+  F+  +YRF     DNS
Sbjct: 65  VRS---DSPSQRVGAAPAGIFSQITHARPMLSLDNTFSDEDVADFVASVYRFLGVMPDNS 121

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE  K   AA RGDG +GE+V+A I  I  IP  L  + P+++
Sbjct: 122 IAFTAEPKIDGLSMSIRYEHRKLKTAATRGDGTTGENVTANILTIKEIPTELPADAPDVV 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFLALN +M A GR+ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 182 EVRGEVYMAKSDFLALNAQMEAEGRQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S + A+ Q  M++  +  GFPVN   R+  +   I+++Y E+   R+ L YDIDG+VY
Sbjct: 242 EMSTMPAETQSGMVEAFKRWGFPVNPLTRRLTSVEEIIAHYREIGLQRADLDYDIDGVVY 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW  +HKF  +QA T +  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 302 KVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTTVEAIDIQVGRTGALTPVARLEPITVG 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           G ++TNATLHN DYI+G+   G+ +R  G DIR+GD V+V+RAG+VIP+V+D+++ +R  
Sbjct: 362 GVVVTNATLHNADYIEGIGNGGERIRPEGHDIRIGDTVIVQRAGDVIPQVLDVVLEKRPE 421

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            +  + FP  CP+C S  VR+ N KTGKL +  RCTGG  CSAQ  E +KHFVSR+AF+I
Sbjct: 422 TSVKYEFPKTCPVCGSHAVREKNEKTGKLDSVTRCTGGFVCSAQAKEHIKHFVSRNAFDI 481

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGDVSVTNLYDSI 542
           EGLG +Q+DFFF+SEDPA  IR   DIFTL++RQ+ S  T++ENI GFG VSV  L+D+I
Sbjct: 482 EGLGTKQVDFFFESEDPALMIRTAPDIFTLKQRQEASSLTRLENIDGFGRVSVRKLFDAI 541

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           + RR I+L RFIF+LGIRHVG   A+ LA+ Y SY  FA  +        + W  L  + 
Sbjct: 542 DARREIALNRFIFALGIRHVGETTAKLLARSYGSYAAFADAMQEAAPKFGEAWNELNSID 601

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G+++A ++VEF++ PRN+  V  LLKEV+P          S +  K +VFTG+L++  
Sbjct: 602 GIGEVVAASMVEFFKEPRNLEVVSRLLKEVTPLDAEAVTASDSPVAGKTVVFTGSLERFT 661

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+     LGA V+  +S+KTD ++ G   GSKL+KA+++GV +M E+++L L+
Sbjct: 662 RDEAKARAESLGAKVAGSVSKKTDYLVAGPGAGSKLDKAREVGVTVMTEDEWLALI 717


>gi|227822641|ref|YP_002826613.1| NAD-dependent DNA ligase LigA [Sinorhizobium fredii NGR234]
 gi|254781400|sp|C3MEL9|DNLJ_RHISN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|227341642|gb|ACP25860.1| DNA ligase [Sinorhizobium fredii NGR234]
          Length = 717

 Score =  870 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/715 (49%), Positives = 493/715 (68%), Gaps = 4/715 (0%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P+E L+  +A +EL+ L  E++ HD  Y+    P I D++YDALKRR D I   FP 
Sbjct: 4   EKKPVEQLTETEAAEELAFLVTELARHDALYHGQDAPEISDADYDALKRRNDLIEELFPA 63

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R    + P  KIG   +L+   V H+ P LSL+  ++ ED R F+  IYRF  K  D+
Sbjct: 64  LIRE---DSPSRKIGAAPSLTFQPVLHARPMLSLDNTFSDEDARDFVAGIYRFLGKLPDH 120

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           SI FT EPKIDG  +++RYE  K V AA RGDG +GE+V+A IR I  IP+ L  + P++
Sbjct: 121 SIAFTAEPKIDGLSMSLRYENRKLVTAATRGDGTTGENVTANIRTIRMIPQTLPADAPDV 180

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGE+Y++K+DF ALN EM A GR  Y NPRN ASG LR+L+     +R L FF +  
Sbjct: 181 VEVRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRKLRFFAYAW 240

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+ S + +  Q+ M++  +  GFPVN  +++ ++   ++ +Y+ ++  R  L YDIDG+V
Sbjct: 241 GEISAMPSDTQFGMVETFKAWGFPVNPLMQRLSSADELLQHYHHIERERPDLDYDIDGVV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD   LQ +LG R+RSPRW  +HKF  +QA TRL  IDIQ+GRTG LTPVARLEP+ +
Sbjct: 301 YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITV 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++TNATLHNEDYI+G+  SG+ +R GRDIR+GD V+V+RAG+VIP++VD++++ER  
Sbjct: 361 GGVVVTNATLHNEDYIRGIGNSGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERAE 420

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            A+P+ FP+ CP+C S  VRD+N KTGK+ A  RCTGG  C AQ +E LKHFVSR AF+I
Sbjct: 421 GAEPYRFPTTCPVCGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAIEHLKHFVSRHAFDI 480

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG +Q++FFF+SEDP  SIR   DIFTL+RRQ+ S TK+ENI GFG VSV  LY++IN
Sbjct: 481 EGLGSKQIEFFFESEDPTLSIRTAPDIFTLERRQEASLTKLENIEGFGKVSVRKLYEAIN 540

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            RR I+L RFI++LGIRHVG   A+ LA+ Y +Y++F   + +  +   D W  L  +  
Sbjct: 541 ARREIALHRFIYALGIRHVGETTAKLLARSYGTYEHFRAAMVDAGSLAGDAWNELNSIEG 600

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G+++A+AIVEFY+ PRN+  V  LL+EV P       +  S +  K +VFTG+L+K+ R
Sbjct: 601 IGEVVARAIVEFYKEPRNLKVVSDLLEEVRPESAETRVSTDSPVAGKTVVFTGSLEKMTR 660

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 661 DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 715


>gi|209550159|ref|YP_002282076.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|254781399|sp|B5ZWH9|DNLJ_RHILW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|209535915|gb|ACI55850.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 718

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/712 (47%), Positives = 491/712 (68%), Gaps = 5/712 (0%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELERLAKEIAHHDALYHGKDRPQISDADYDALKRRNDALEVQFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  ---DSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ S
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A  Q++M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD
Sbjct: 245 EMPADTQFDMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ +LG R+RSPRW  +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+ +GG +
Sbjct: 305 SLELQARLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364

Query: 368 ITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +TNATLHNEDYIKG+  SG+ +R    DIR GD V+V+RAG+VIP+++D+++ +R  DA+
Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEDHDIREGDTVIVQRAGDVIPQILDVVMEKRTADAR 424

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP+C S  VR++N KTGK+ +  RCTGG  C AQ  E LKHFVSR+AF+IEGL
Sbjct: 425 SYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+DFFF+ ED +  IR   +IFTL++RQQ S TK+ENI GFG VSV  LY +IN+RR
Sbjct: 485 GSKQIDFFFEHEDASLQIRTAPEIFTLEKRQQASLTKLENIDGFGKVSVGKLYTAINERR 544

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + D W  L  +  +G+
Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFAMAMKEAAPLSGDAWNDLNAIEGIGE 604

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+A+VEFY+ PRN+  +  L++EV+P          S +  K +VFTG+L+K  R +A
Sbjct: 605 VVARAMVEFYKEPRNVEVITRLIEEVTPQQAEQPVTTGSPVAGKTVVFTGSLEKFTRDEA 664

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716


>gi|190892570|ref|YP_001979112.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652]
 gi|254781398|sp|B3PTU7|DNLJ_RHIE6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190697849|gb|ACE91934.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652]
          Length = 718

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/712 (47%), Positives = 491/712 (68%), Gaps = 5/712 (0%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P   +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  ---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ +
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMA 244

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A  Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD
Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ++LG R+RSPRW  +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+ +GG +
Sbjct: 305 SLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364

Query: 368 ITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +TNATLHNEDYIKG+  SG+ +R    DIR GD V+V+RAG+VIP+++D+++ +R  DA+
Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRAADAR 424

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP+C S  VR++N KTGK  +  RCTGG  C AQ  E LKHFVSR+AF+IEGL
Sbjct: 425 SYEFPKTCPVCGSHAVREVNEKTGKTDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+DFFF++EDP+  IR   +IFTL++RQQ S TK+ENI GFG VSV  LY +IN+RR
Sbjct: 485 GSKQVDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAINERR 544

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + + W  L  +  +G+
Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGEAWTDLNAIEGIGE 604

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+A+VEFY+ PRN+  +  LL EV+P+         S +  K +VFTG+L+K  R +A
Sbjct: 605 VVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFTRDEA 664

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716


>gi|241205543|ref|YP_002976639.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859433|gb|ACS57100.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 718

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/716 (47%), Positives = 489/716 (68%), Gaps = 5/716 (0%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +   ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+
Sbjct: 4   ESSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDRPEISDADYDALKRRNDALEVRFPE 63

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R    + P   +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D 
Sbjct: 64  LIRE---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ 120

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           SI FT EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P +
Sbjct: 121 SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAV 180

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  
Sbjct: 181 VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW 240

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+ SE+ A  Q+ M+Q  +  GFPVN  V++ N+   I+++Y+E+   R  L YDIDG+V
Sbjct: 241 GEMSEMPADTQFGMVQTFKDWGFPVNPLVKRLNSVADILTHYDEIGLERPDLDYDIDGVV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD   LQ +LG R+RSPRW  +HKF  +QA T + +IDIQ+GRTG LTPVARL P+ +
Sbjct: 301 YKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLTPITV 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           GG ++TNATLHN DYI+G+  SG+ +R    DIR+GD V+V+RAG+VIP+V+D+++ +R 
Sbjct: 361 GGVVVTNATLHNADYIRGIGNSGERIRADEHDIRIGDTVIVQRAGDVIPQVLDVVMEKRS 420

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            +A+P+ FP  CP+C S  VR+ + KTGKL +  RCTGG  C AQ  E LKHFVSR+AF+
Sbjct: 421 AEARPYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSRNAFD 480

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG +Q+DFFF++ED +  IR   DIFTL++RQQ S TK+ENI GFG VSV  LY +I
Sbjct: 481 IEGLGSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYAAI 540

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            +RR+I+L RFI++LGIRHVG   A+ LA+ Y +Y  F   +    A + D W  L  + 
Sbjct: 541 TERRSIALHRFIYALGIRHVGETTAKLLARSYGTYAAFETAMREAEALSGDAWNDLNAIE 600

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G+++A+AIVEFY+ PRN+  +  L++EV+P      K   S +  K +VFTG+L+K  
Sbjct: 601 GIGEVVARAIVEFYKEPRNVEVITRLIEEVTPEEAEQPKTAGSPVAGKTVVFTGSLEKFT 660

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+     LGA V+  +S+KTDI++ G   GSKL+KA++ GV+ M+E+++L L+
Sbjct: 661 RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKAREFGVQTMDEDEWLALI 716


>gi|327194610|gb|EGE61460.1| DNA ligase (NAD+) protein [Rhizobium etli CNPAF512]
          Length = 718

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/712 (47%), Positives = 492/712 (69%), Gaps = 5/712 (0%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELERLAKEIAHHDSLYHGKDQPEISDADYDALKRRNDALEVRFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P   +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  ---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ +
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMA 244

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A  Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD
Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ++LG R+RSPRW  +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+ +GG +
Sbjct: 305 SLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364

Query: 368 ITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +TNATLHNEDYIKG+  SG+ +R    DIR GD V+V+RAG+VIP+++D+++ +R  DA+
Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRAADAR 424

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP+C S  VR++N KTGK+ +  RCTGG  C AQ  E LKHFVSR+AF+IEGL
Sbjct: 425 SYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+DFFF++EDP+  IR   +IFTL++RQQ S TK+ENI GFG VSV  LY +IN+RR
Sbjct: 485 GAKQVDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAINERR 544

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + D W  L  +  +G+
Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNAIEGIGE 604

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+A+VEFY+ PRN+  +  LL EV+P+         S +  K +VFTG+L+K  R +A
Sbjct: 605 VVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFTRDEA 664

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716


>gi|307944884|ref|ZP_07660221.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4]
 gi|307771808|gb|EFO31032.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4]
          Length = 721

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/720 (44%), Positives = 465/720 (64%), Gaps = 9/720 (1%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           +   + + +EAL+ EQA  EL  L   I+ HD  Y+Q   P I D++YDAL+RR  AI  
Sbjct: 7   VSAFEKLDVEALTSEQAETELERLANAIAKHDKLYHQDDAPAISDADYDALRRRNTAIEA 66

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDL R    + P   +G   + +  K+ H +P LSL+  +N ED++ F+ R+ RF + 
Sbjct: 67  RFPDLVRD---DSPSRNVGAAPSEAFSKIEHKVPMLSLDNAFNDEDVQDFVGRVRRFLKF 123

Query: 121 KDD-NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
                ++  T EPKIDG  +++RYE G  VYAA RGDG +GE+V+A  + I  IP+ LS 
Sbjct: 124 DPLMGALAVTAEPKIDGLSLSLRYEAGALVYAATRGDGTTGENVTANAKTISDIPQKLSG 183

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           + P+++E+RGEVY++  DF  LN  M A G K +ANPRNAA+G LR+L      +R L F
Sbjct: 184 DAPDVVEIRGEVYMAHADFQVLNQRMEANGGKVFANPRNAAAGSLRQLKSEITASRPLKF 243

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +  G  S + A  Q  M+++M+  GF +N  +++  T   +++ Y+ ++  R+TL YD
Sbjct: 244 FAYAWGDMSALPADTQMGMVEQMKVWGFQINPLMKRCETVEELLAVYHGIEEDRATLGYD 303

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD   LQ++LG  +RSPRW I+HKF  ++A T L +IDIQ+GRTG LTPVA+L
Sbjct: 304 IDGVVYKVDRLDLQQRLGFVSRSPRWAIAHKFPAEKAYTILNEIDIQVGRTGALTPVAKL 363

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GG +++NATLHNEDYIKG+   G+ +RGG+D+R GD V V+RAG+VIP++VD+ +
Sbjct: 364 EPVTVGGVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRPGDTVQVQRAGDVIPQIVDVDL 423

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R   A+PF FPS CP C S  VR+ NPKTG+L A  RCTG L C AQ  ERLKHFVSR
Sbjct: 424 SKRKEGAEPFEFPSVCPRCGSHAVREENPKTGRLDAVRRCTGALICPAQATERLKHFVSR 483

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +AF+IEG G +Q+D FF        ++  ADIFTL+ R + S TK+ N  G+G VS  NL
Sbjct: 484 NAFDIEGFGDKQVDAFFAD----GLVKTAADIFTLEERDKQSLTKLRNREGWGTVSAKNL 539

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +++IN +RNI L R IF LGIRHVG   A+ LA+ Y S+Q F   +      N + W  L
Sbjct: 540 FEAINAKRNIDLHRLIFGLGIRHVGEGNAKLLARAYGSWQAFYDAMVKAHDKNGEAWEDL 599

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  +G I+A+A+ EF+    N   ++ALL ++SP       +  S +  K +VFTG L
Sbjct: 600 NAIDGIGHIVAEALTEFFAEEHNREQLDALLAQISPKQVEQIDSSGSPVAGKTVVFTGAL 659

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R +A+    +LGA VS  +S+KTD+++ G   GSKL+KAQ L ++++ E+ +  L+
Sbjct: 660 ERMTRDEAKAMAERLGAKVSGSVSKKTDLLVAGPGAGSKLKKAQGLQIEVITEDVWFDLV 719


>gi|254470147|ref|ZP_05083551.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062]
 gi|211960458|gb|EEA95654.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062]
          Length = 722

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/713 (44%), Positives = 466/713 (65%), Gaps = 5/713 (0%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            IEAL+ E+A  EL  L + I+ +D+ Y+    PI+ D+ YD L+RR  A+   FP+L R
Sbjct: 10  DIEALNAEEAALELERLARLIAEYDEAYHTQDAPIVDDATYDGLRRRNAALEAKFPELVR 69

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSI 126
           +   + P N++GG +     K+TH++P LSL+  ++ ED++ FI ++ RF +      ++
Sbjct: 70  A---DSPSNRVGGAVAEGFGKITHAVPMLSLDNAFSDEDVQDFIGKVRRFLKYDPLMGAL 126

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T EPKIDG  +++RYE GK VYAA RGDG +GE+V+A    I  IP+ L   +P+++E
Sbjct: 127 AVTAEPKIDGLSLSLRYESGKLVYAATRGDGATGENVTANALTIQDIPQELPAGVPDVVE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN  M A G K +ANPRNAA+G LR+LNP    TR L FF +  G 
Sbjct: 187 VRGEVYMSHADFAALNARMEANGGKVFANPRNAAAGSLRQLNPEITKTRPLKFFAYAWGD 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE+ A  Q  M++     GF +N  +++  T   ++  Y+ ++  RS L YDIDG+VYK
Sbjct: 247 MSEVPADTQMGMVELFGAWGFQINPLMKRCETVEALLKVYHGIEEDRSGLGYDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   LQ +LG  +RSPRW I+HKF  ++A T L  I+IQ+GRTG LTPVA+LEPV +GG
Sbjct: 307 VDRLDLQGRLGFVSRSPRWAIAHKFPAERAFTTLNAIEIQVGRTGALTPVAKLEPVTVGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYIKG+   G+ +R  +D+RVGD V+++RAG+VIP++VD+ +++R  D 
Sbjct: 367 VVVSNATLHNEDYIKGIGQDGESIRDSKDLRVGDTVIIQRAGDVIPQIVDVDLSKRAEDV 426

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           QP+ FP+ CP+C S  +R+ NP +GK+ A  RCTGGL C AQ +E+LKHFVSR+AF+IEG
Sbjct: 427 QPYEFPTECPVCNSHAIRETNPNSGKVDAVRRCTGGLICPAQAVEKLKHFVSRNAFDIEG 486

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++Q++ F++ +     IR PADIFTL  R + S  K+ +  GFG VS   L+++I+ +
Sbjct: 487 LGEKQMEAFYEYDMDKGGIRTPADIFTLAERDKVSLNKLRSREGFGAVSARKLFEAIDSK 546

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I L R IF LGIRHVG   A+ LA+ Y S+Q F   +       ++ +  L  +  +G
Sbjct: 547 RQIELNRVIFGLGIRHVGEGNAKLLARAYSSWQGFYDAMIAATDTTSEAYRELNDIDGIG 606

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +A A+VEF+    N+ A+ AL+++++P          S +  K LVFTG+L+++ R +
Sbjct: 607 GTVANALVEFFAEEHNLTALAALMEQITPLDVVVADTSGSPVAGKTLVFTGSLERMSRDE 666

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+     LGA VS  +S+KTD++I G   GSKL KAQ LG+ +++E+ +  L+
Sbjct: 667 AKARAESLGAKVSGSVSKKTDLVIAGPKAGSKLTKAQSLGIDVISEDDWFELV 719


>gi|254502790|ref|ZP_05114941.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11]
 gi|222438861|gb|EEE45540.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11]
          Length = 725

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/715 (43%), Positives = 466/715 (65%), Gaps = 9/715 (1%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +  L+ E A+ EL  L  EI+ HD  Y+Q   P I D++YDAL+RR  AI   FPDL 
Sbjct: 16  IAVLDLTPEAAKAELERLASEIAEHDRRYHQEDAPTISDADYDALRRRNSAIEARFPDLI 75

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NS 125
            ++ P+    ++G        K+TH +P LSL+  ++ +D+R F+ R+ RF +      +
Sbjct: 76  LADGPSA---QVGAAPASGFGKITHRVPMLSLDNAFSDDDVRDFVGRVRRFLKFDPLMGA 132

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           +  T EPKIDG  +++RYE GK VYAA RGDG +GE+V+A  + I  IP  L+ ++ +++
Sbjct: 133 LAVTAEPKIDGLSLSLRYEDGKLVYAATRGDGTTGENVTANAKTITDIPHTLAGSVLDVV 192

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++  DF ALN  M+A G K +ANPRNAA+G LR+L      +R L FF +  G
Sbjct: 193 EVRGEVYMAHKDFEALNARMVANGGKVFANPRNAAAGSLRQLKSEITASRPLRFFAYAWG 252

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S +    Q  M+ ++   GF +N  +++  T   +++ Y+ ++  R+ L YDIDG+VY
Sbjct: 253 EMSTLPKDTQDGMVAQLAAWGFQINPLMKRCETVEELLAVYHGIEENRAQLDYDIDGVVY 312

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ++LG  +RSPRW I+HKF  +QA T L DI+IQ+GRTG LTPVA+LEP+ +G
Sbjct: 313 KVDRLDLQERLGFVSRSPRWAIAHKFPAEQAWTVLNDIEIQVGRTGALTPVAKLEPITVG 372

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYIKG+   G+ +RGG+D+R GD V ++RAG+VIP++VD+ +++R   
Sbjct: 373 GVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRKGDAVKIQRAGDVIPQIVDVDLDKRLDG 432

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P+ FP+ CP C S  VR+ N KTG+  A  RCTGGL C AQ  E+LKHFVSR+AF+IE
Sbjct: 433 AEPYEFPTRCPRCNSHAVREENEKTGRKDAVRRCTGGLICPAQATEKLKHFVSRNAFDIE 492

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G G +Q+D F++ +     +   ADIFTL  R + S TK+ N  G+G VS  NL+++I+ 
Sbjct: 493 GFGDKQVDAFYQDD----LVMTAADIFTLAERDKQSLTKLRNREGWGAVSAKNLFEAIDA 548

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RR I L RFIF+LGIRHVG   A+ LA+ Y S+ NF + +     H ++ W  L  +  +
Sbjct: 549 RREIDLHRFIFALGIRHVGEGNAKLLARAYGSWANFYKAMTEASDHGSEAWAELNDIDGI 608

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G I+A A+VEF+    N   ++ALL+EV+P+         S +  K +VFTG+L+++ R 
Sbjct: 609 GHIVADALVEFFAENHNREQLDALLQEVTPTDAEKIDASGSPVAGKTVVFTGSLERMTRD 668

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+    + GA VS  +S+KTD+++ G   GSKL+KA +L +++++E+ +  L+ 
Sbjct: 669 EAKAMAERFGAKVSGSVSKKTDLVVAGPGAGSKLKKASELEIEVISEDDWFDLVD 723


>gi|254719452|ref|ZP_05181263.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
 gi|265984457|ref|ZP_06097192.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
 gi|306839229|ref|ZP_07472046.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653]
 gi|264663049|gb|EEZ33310.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
 gi|306405776|gb|EFM62038.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653]
          Length = 719

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/724 (46%), Positives = 477/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+    P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYEDGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPSVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ +R  D
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDVVLEKRSAD 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A PF FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 AVPFQFPHECPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA SIR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALSIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +           ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|325293451|ref|YP_004279315.1| DNA ligase [Agrobacterium sp. H13-3]
 gi|325061304|gb|ADY64995.1| DNA ligase [Agrobacterium sp. H13-3]
          Length = 724

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/726 (47%), Positives = 486/726 (66%), Gaps = 12/726 (1%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K Q IP+E L+  +A  EL+ L  E++ HD  Y+    P I D++YDALKRR DAI  
Sbjct: 1   MSKDQ-IPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEA 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFP L R+   + P  K+G     +   + H+ P LSL+  ++  DLR F++ +YRF   
Sbjct: 60  AFPALVRA---DSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEGDLRDFVSSVYRFLGH 116

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D+SI FT EPKIDG  ++IRYE GK   AA RGDG +GE+V+A I+ I  IP  L  +
Sbjct: 117 LPDDSIAFTAEPKIDGLSMSIRYENGKLKTAATRGDGTTGENVTANIKTIKEIPNQLPAD 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P+++EVRGEVY++K+DF+ALN +M A G++ Y NPRN ASG LR+ +      R L FF
Sbjct: 177 VPDVVEVRGEVYMAKSDFMALNAQMEADGKQTYVNPRNTASGSLRQFDANVTAKRKLRFF 236

Query: 240 VHGLGKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            + LG+ S        A  QY +++K R  GFPVN  +++  +   ++ +YNE+   R  
Sbjct: 237 AYALGEVSNGGQPTRIADTQYGIVEKFREWGFPVNPLMKRFTSAEQLLEHYNEIGVARPD 296

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDG+VYKVD   LQ++LG R+RSPRW  +HKF  +QA T + +I+IQ+GRTG LTP
Sbjct: 297 LDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTP 356

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKV 413
           VARL P+ +GG ++TNATLHN DYI+G+  SG+ +R    DIR+GD V+V+RAG+VIP+V
Sbjct: 357 VARLTPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQV 416

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           +D+++ +R  +A  ++FP  CP+C S  VR+ N KTGKL +  RCTGG  C AQ +E LK
Sbjct: 417 LDVLLEKRPAEAVKYAFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLK 476

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGD 532
           HFVSR+AF+IEGLG +Q+DFFF+SEDPA SI+   DIFTL+ RQ+ S  TK+ENI GFG 
Sbjct: 477 HFVSRNAFDIEGLGSKQIDFFFESEDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGK 536

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
           VSV  L+D+I+ RR I L R IF+LGIRHVG   A+ LA+ Y +Y++F + +       +
Sbjct: 537 VSVKKLFDAIDARREIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEEAMKAAADPAS 596

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           D W  L  +  +G+++A+AI+EFY+ PRN+  ++ L++E+ P          S +  K +
Sbjct: 597 DAWAELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELRPKEAEKPSTEGSPVAGKTV 656

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTG+L+K  R +A+     LGA V+  +S+KTDI++ G   GSKL KA +LGV+ M+E+
Sbjct: 657 VFTGSLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKAAELGVQTMDED 716

Query: 713 QFLFLL 718
           ++L L+
Sbjct: 717 EWLALI 722


>gi|150397271|ref|YP_001327738.1| NAD-dependent DNA ligase LigA [Sinorhizobium medicae WSM419]
 gi|166216245|sp|A6UB73|DNLJ_SINMW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150028786|gb|ABR60903.1| DNA ligase, NAD-dependent [Sinorhizobium medicae WSM419]
          Length = 717

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/715 (48%), Positives = 489/715 (68%), Gaps = 4/715 (0%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q  P+E ++  +A +EL+ L  E+S HD  Y+    P I D++YDALKRR D I   FP 
Sbjct: 4   QRKPVEQMTEAEAAEELAFLAAELSRHDMLYHGKDDPEISDADYDALKRRNDLIEERFPA 63

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R    + P  K+G   +L+   V H+ P LSL+  ++ ED R F+  IYRF  +  D 
Sbjct: 64  LIRE---DSPSQKVGAAPSLTFAPVVHARPMLSLDNSFSDEDARAFVAGIYRFLGRLPDG 120

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           SI FT+EPKIDG  +++RYE  + V AA RGDG +GE+V+A +R I  IP+ L    P++
Sbjct: 121 SIAFTVEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANVRTIGMIPQRLPAEAPDV 180

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGE+Y++K+DF ALN EM A GR  Y NPRN ASG LR+L+     +R L FF +  
Sbjct: 181 VEIRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRRLRFFAYAW 240

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+ S + A  Q  M++  +  GFPVN  +++  +   ++ +Y+ ++  R  L YDIDG+V
Sbjct: 241 GEMSAMPADTQLGMVETFKAWGFPVNPLMQRFFSADELLEHYHHIERERPELDYDIDGVV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+  LQ +LG R+RSPRW  +HKF  ++A TRL  IDIQ+GRTG LTPVARLEP+ +
Sbjct: 301 YKVDQLDLQARLGFRSRSPRWATAHKFPAERAFTRLKGIDIQVGRTGALTPVARLEPITV 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++TNATLHNEDYI+G+  +G+ +R GRDIR+GD V+V+RAG+VIP++VD++++ER  
Sbjct: 361 GGVVVTNATLHNEDYIRGIGNTGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERPE 420

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             +P+ FP+ CPIC S  VRD+N KTGK+ A  RCTGG  C AQ +E LKHFVSR+AF+I
Sbjct: 421 GTEPYRFPTSCPICGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDI 480

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG +Q++FFF+SED    IR   DIFTL+RRQ++S TK+ENI GFG VSV  LY++IN
Sbjct: 481 EGLGSKQIEFFFESEDETLRIRTAPDIFTLERRQESSLTKLENIDGFGKVSVRKLYEAIN 540

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            RR+I L RFI++LGIRHVG   A+ LA+ Y +Y++F   +      + D W  L  +  
Sbjct: 541 ARRSIGLHRFIYALGIRHVGETTAKLLARSYGTYEHFGAAMTEAGGFSGDAWNELNSIDG 600

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G+++A+AIVEFY+ PRN+  +  LL+EV+P          S +  K +VFTG+L+K+ R
Sbjct: 601 IGEVVARAIVEFYKEPRNLKVLSDLLEEVTPERAEMPVATDSPVAGKTVVFTGSLEKMTR 660

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+     LGA V+  +S+KTDI++ G   GSKL+KA++LG++ M+E+++L L+
Sbjct: 661 DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGLQTMDEDEWLALI 715


>gi|116253034|ref|YP_768872.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. viciae
           3841]
 gi|123261370|sp|Q1ME47|DNLJ_RHIL3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115257682|emb|CAK08780.1| putative DNA ligase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 718

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/712 (48%), Positives = 493/712 (69%), Gaps = 5/712 (0%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL+ L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELARLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVRFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P   +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  ---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ S
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A  Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD
Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ +LG R+RSPRW  +HKF  +QA T + +IDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 305 SLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLTPITVGGVV 364

Query: 368 ITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +TNATLHN DYI+G+  SG+ +R    DIR+GD V+V+RAG+VIP+V+D+++ +R  +A+
Sbjct: 365 VTNATLHNADYIQGIGNSGERIRDDEHDIRIGDTVIVQRAGDVIPQVLDVVMEKRPAEAR 424

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP+C S  VR+ + KTGKL +  RCTGG  C AQ  E LKHFVSR+AF+IEGL
Sbjct: 425 PYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+DFFF++ED +  IR   DIFTL++RQQ S TK+ENI GFG VSV  LY +I++RR
Sbjct: 485 GSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYGAIDERR 544

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I+L RFI++LGIRHVG   A+ LA+ Y +Y+ F   +    A + D W  L  +  +G+
Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFETAMREAEALSGDAWNDLNAIEGIGE 604

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+AIVEFY+ PRN+  +  LL+EV+P      K   S +  K +VFTG+L+K+ R +A
Sbjct: 605 VVARAIVEFYKEPRNVEVITRLLEEVTPEEAEQPKTAGSPVAGKTVVFTGSLEKLTRDEA 664

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+Q+L L+
Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDQWLALI 716


>gi|15889366|ref|NP_355047.1| NAD-dependent DNA ligase LigA [Agrobacterium tumefaciens str. C58]
 gi|166215388|sp|A9CIB3|DNLJ_AGRT5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15157212|gb|AAK87832.1| DNA ligase [Agrobacterium tumefaciens str. C58]
          Length = 724

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/726 (47%), Positives = 484/726 (66%), Gaps = 12/726 (1%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K Q IP+E L+  +A  EL+ L  E++ HD  Y+    P I D++YDALKRR DAI  
Sbjct: 1   MSKDQ-IPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEA 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFP L R+   + P  K+G     +   + H+ P LSL+  ++ EDLR F++ +YRF   
Sbjct: 60  AFPALVRA---DSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGH 116

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D+SI FT EPKIDG  ++IRYE  K   AA RGDG +GE+V+A IR I  IP  L  +
Sbjct: 117 LPDDSIAFTAEPKIDGLSMSIRYENRKLKTAATRGDGTTGENVTANIRTIKEIPNELPAD 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P+++EVRGEVY++K+DFLALN +M A G++ Y NPRN ASG LR+L+      R L FF
Sbjct: 177 APDVVEVRGEVYMAKSDFLALNAQMEADGKQTYVNPRNTASGSLRQLDANVTAKRKLRFF 236

Query: 240 VHGLGKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            + LG+ S        A  QY +++K R  GFPVN  +++  +   ++ +YNE+   R  
Sbjct: 237 AYALGEVSNGGQPARIADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARPD 296

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDG+VYKVD   LQ++LG R+RSPRW  +HKF  +QA T + +I+IQ+GRTG LTP
Sbjct: 297 LDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTP 356

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKV 413
           VARL P+ +GG ++TNATLHN DYI+G+  SG+ +R    DIR+GD V+V+RAG+VIP+V
Sbjct: 357 VARLTPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQV 416

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           +D+++ +R   A  + FP  CP+C S  VR+ N KTGKL +  RCTGG  C AQ +E LK
Sbjct: 417 LDVLLEKRAAGAAKYVFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLK 476

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGD 532
           HFVSR+AF+IEGLG +Q+DFFF+S+DPA SI+   DIFTL+ RQ+ S  TK+ENI GFG 
Sbjct: 477 HFVSRNAFDIEGLGTKQIDFFFESDDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGK 536

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
           VSV  L+D+I+ RR I L R IF+LGIRHVG   A+ LA+ Y +Y++F + +       +
Sbjct: 537 VSVKKLFDAIDARRAIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEKAMKAAADPAS 596

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           D W  L  +  +G+++A+AI+EFY+ PRN+  ++ L++E+ P          S +  K +
Sbjct: 597 DAWAELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELQPKEAEKPSTEGSPVAGKTV 656

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTG+L+K  R +A+     LGA V+  +S+KTDI++ G   GSKL KA +LGV+ M+E+
Sbjct: 657 VFTGSLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKATELGVQTMDED 716

Query: 713 QFLFLL 718
           ++L L+
Sbjct: 717 EWLALI 722


>gi|118590881|ref|ZP_01548281.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614]
 gi|118436403|gb|EAV43044.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614]
          Length = 750

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/714 (43%), Positives = 463/714 (64%), Gaps = 9/714 (1%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
             I+AL+ E+A+ EL  L  EI+ HD  Y+Q   P+I D++YDAL+RR  +I   FP+L 
Sbjct: 42  TDIDALTQEEAQVELKRLAAEIAEHDRRYHQEDAPVISDADYDALRRRNASIEARFPNLI 101

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NS 125
             + P+    ++G        K+TH +P LSL+  +N +D+R F+ R+ RF +      +
Sbjct: 102 LDDGPSA---QVGAAPASGFGKITHRVPMLSLDNAFNDDDVRDFVGRVRRFLKYDPLMGA 158

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           +  T EPKIDG  +++RYE G  VYAA RGDG +GE+V+   + I  IP  LS  +P+++
Sbjct: 159 LAVTAEPKIDGLSLSLRYENGTLVYAATRGDGTTGENVTENAKTIKDIPEKLSGTVPDVV 218

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++  DF ALN+ M A G K +ANPRNAA+G LR+L      +R L FF +  G
Sbjct: 219 EVRGEVYMAHKDFQALNERMAANGGKVFANPRNAAAGSLRQLKSEITASRPLRFFAYAWG 278

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S +    Q+ M++++   GF +N  +R+  T   ++  Y+ ++  R+ L YDIDG+VY
Sbjct: 279 EMSALPEDTQFGMVKQLEAWGFQINPLMRRCETVEELLGVYHGIEESRAQLDYDIDGVVY 338

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ++LG  +RSPRW I+HKF  +QA T L DI+IQ+GRTG LTPVA+LEP+ +G
Sbjct: 339 KVDRLDLQERLGFVSRSPRWAIAHKFPAEQAYTVLNDIEIQVGRTGALTPVAKLEPITVG 398

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYIKG+   G+ +RGG+D+R+GD V ++RAG+VIP++VDI +++R   
Sbjct: 399 GVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRIGDTVKIQRAGDVIPQIVDIDLDKRPEG 458

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+ F FP+ CP C S  VR+   KTG+  A  RCTGGL C AQ  E+LKHFVSR+AF+IE
Sbjct: 459 AEAFEFPTICPACGSHAVREEKEKTGRRDAVRRCTGGLICPAQATEKLKHFVSRNAFDIE 518

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G G +Q+D F+K       +  PADIFTL+ R + S TK+ N  G+G VS  NL+++IN 
Sbjct: 519 GFGDKQVDAFYKE----GLVMAPADIFTLEERDKRSLTKLRNREGWGAVSAKNLFEAINA 574

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RR I L RFIF+LGIRHVG   A+ LA+ Y S+  F   +       ++ W  L  +  +
Sbjct: 575 RREIDLHRFIFALGIRHVGEGNAKLLARAYGSWAAFYAAMKAAHDTESEAWAELNDIDGI 634

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G I+A+A+ EF+    N+  ++ALL EVSP          S +  K +VFTG+L+++ R 
Sbjct: 635 GHIVAEALAEFFAEQHNLDQLDALLVEVSPKDAEKINASGSPVAGKTVVFTGSLERMTRD 694

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+    + GA  +  +S+KTD+++ G   GSKL+KAQ+L +++++E+ +  L+
Sbjct: 695 EAKAMAERFGAKTAGSVSKKTDLVVAGPGAGSKLKKAQELEIEVISEDDWFDLV 748


>gi|222086432|ref|YP_002544966.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84]
 gi|254781247|sp|B9JH39|DNLJ_AGRRK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221723880|gb|ACM27036.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84]
          Length = 717

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/690 (49%), Positives = 471/690 (68%), Gaps = 4/690 (0%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
            +D  Y+    P I D+EYDALKRR DAI   FP L R+   + P  ++G   + +   V
Sbjct: 29  RNDALYHGNDAPEISDAEYDALKRRNDAIEARFPALVRA---DSPSRRVGAAPSETFMPV 85

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H+ P LSL+  ++ ED++ F+  +YRF  +  D SI FT EPKIDG  ++IRYE G+ V
Sbjct: 86  VHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAFTAEPKIDGLSMSIRYENGRMV 145

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
            AA RGDG +GE+V+A IR I  IP+ L    P ++E+RGEVY++K+DFLALN +M A G
Sbjct: 146 SAATRGDGTTGENVTANIRTIKEIPQTLPAGAPAVVEIRGEVYMAKSDFLALNAQMEAEG 205

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
           ++ Y NPRN A+G LR+L+     +R L FF +  G+ S++ A  Q+ M+Q     GFPV
Sbjct: 206 KQSYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMSDMPADTQFGMVQAFGEWGFPV 265

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
           N  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD   LQ +LG R+RSPRW  +H
Sbjct: 266 NPLMKRLNSVADILAHYDEIGLQRPDLDYDIDGVVYKVDSLELQARLGFRSRSPRWATAH 325

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           KF  +QA TRLLDIDIQ+GRTG LTPVARLEP+ +GG ++TNATLHN DYIKG+   G+ 
Sbjct: 326 KFPAEQALTRLLDIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNADYIKGIGNKGEP 385

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
           +R GRDIR+GD V+V+RAG+VIP++VD+++ +R   +  + FP  CP+C S  VRD+N K
Sbjct: 386 IRDGRDIRIGDMVIVQRAGDVIPQIVDVVLEKREASSVAYEFPKTCPVCGSHAVRDINEK 445

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
           TGK+ A  RCTGG  C AQ  E LKHFVSR+A++IEGLG +Q+DFFF+S+DPA  +R   
Sbjct: 446 TGKVDAVTRCTGGFICRAQATEHLKHFVSRNAYDIEGLGSKQIDFFFESDDPALQVRTAP 505

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           DIFTL+RRQQ+S +K+ENI GFG VSV+ LY +IN+RR+I+L RFIF+LGIRHVG   A+
Sbjct: 506 DIFTLERRQQSSLSKLENIDGFGKVSVSKLYAAINERRDIALHRFIFALGIRHVGETTAK 565

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ Y +Y+ F   +        D W  L  +  VG+++A+A+VEFY+ PRN+  +  L
Sbjct: 566 LLARSYGTYEAFEAGMKEAAPLAGDAWNDLNNIEGVGEVVARAVVEFYKEPRNVEVISKL 625

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           L EV P          S +  K +VFTG+L+K  R +A+     LGA VS  +S+KTDI+
Sbjct: 626 LDEVRPQEAEQPTTSGSPVVGKTVVFTGSLEKFTRDEAKAKAESLGAKVSGSVSKKTDIV 685

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + G   GSKL+KA++  V++M E+++L L+
Sbjct: 686 VAGPGAGSKLDKAREFNVQVMTEDEWLELI 715


>gi|15965917|ref|NP_386270.1| NAD-dependent DNA ligase LigA [Sinorhizobium meliloti 1021]
 gi|307308227|ref|ZP_07587936.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C]
 gi|307319694|ref|ZP_07599119.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83]
 gi|81634276|sp|Q92NM8|DNLJ_RHIME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15075186|emb|CAC46743.1| Probable DNA ligase [Sinorhizobium meliloti 1021]
 gi|306894625|gb|EFN25386.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83]
 gi|306901225|gb|EFN31831.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C]
          Length = 717

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/690 (48%), Positives = 469/690 (67%), Gaps = 4/690 (0%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
            HD  Y+    P I D++YDALKRR D I   FP L R    + P  K+G   +L+   V
Sbjct: 29  RHDMLYHGKDAPEISDADYDALKRRNDLIEERFPVLVRE---DSPSRKVGAAPSLTFAPV 85

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H+ P LSL+  ++ ED R F+  +YRF  K  D SI FT EPKIDG  +++RYE  + V
Sbjct: 86  VHARPMLSLDNTFSDEDARAFVAGVYRFLGKLPDGSIAFTAEPKIDGLSMSLRYENRRLV 145

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
            AA RGDG +GE+V+A +R I  IP+ L  + P+++E+RGE+Y++K+DF ALN EM A G
Sbjct: 146 TAATRGDGTTGENVTANVRTIGMIPQTLPADAPDVVEIRGEIYMAKSDFAALNAEMAAQG 205

Query: 210 RKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
           R  Y NPRN ASG LR+L+      R L FF +  G+ S + A  Q  M++  +  GFPV
Sbjct: 206 RPLYVNPRNTASGSLRQLDAKVTANRKLRFFAYAWGEMSAMPADTQLGMVETFKAWGFPV 265

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
           N  +++  +   ++ +Y+ ++  R  L YDIDG+VYKVD   LQ +LG R+RSPRW  +H
Sbjct: 266 NPLMQRFFSADELLEHYHHIERERPDLDYDIDGVVYKVDRLDLQARLGFRSRSPRWATAH 325

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           KF  +QA TRL  IDIQ+GRTG LTPVARLEP+ +GG ++TNATLHNEDYI+G+  +G+ 
Sbjct: 326 KFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNEDYIRGVGNTGEP 385

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
           +R GRD+R+GD V+V+RAG+VIP++VD++++ER   A+P+ FP+ CPIC S  VRD+N K
Sbjct: 386 IRDGRDVRIGDMVIVQRAGDVIPQIVDVVMDERPEGAEPYRFPTTCPICGSHAVRDINEK 445

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
           TGK+ A  RCTGG  C AQ +E LKHFVSR+AF+IEGLG +Q++FFF+SED    IR   
Sbjct: 446 TGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDIEGLGSKQIEFFFESEDENLRIRTAP 505

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           +IFTL+RRQ+ S  K+EN  GFG VSV  LY++IN RR+I+L R I++LGIRHVG   A+
Sbjct: 506 EIFTLERRQEASLNKLENTDGFGKVSVRKLYEAINARRSIALHRLIYALGIRHVGETTAK 565

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ Y SY++F   +      + D W  L  +  +G+++A+AIVEFY+ PRN+  V  L
Sbjct: 566 LLARSYGSYEHFGAAMTEAAGFSGDAWNELNSIDGIGEVVARAIVEFYKEPRNLKVVSEL 625

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           L+EV+P          S +  K +VFTG+L+K+ R +A+     LGA V+  +S+KTDI+
Sbjct: 626 LQEVTPESAELPVATDSPVAGKTVVFTGSLEKMTREEAKAKAESLGAKVAGSVSKKTDIV 685

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 686 VAGPGAGSKLDKARELGVQTMDEDEWLALI 715


>gi|239832299|ref|ZP_04680628.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301]
 gi|239824566|gb|EEQ96134.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301]
          Length = 734

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/725 (47%), Positives = 475/725 (65%), Gaps = 19/725 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP+E L+  +A  EL  L +EI++HD+ Y+   +P I D+EYDALKRR DAI   FP L 
Sbjct: 19  IPVEKLTEPEAVSELGRLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLV 78

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P  ++G         V H+ P LSL   ++ ED+R F+  +YRF  +  DNSI
Sbjct: 79  RT---DSPSLRVGTAPVSKFAPVVHARPMLSLGNAFSDEDVRDFVGSVYRFLGQLPDNSI 135

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++E
Sbjct: 136 AFTAEPKIDGLSMSIRYENGVLVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPSVVE 195

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY++K+DFLALN++M A G++ Y NPRN A+G LR+L+     +R L FF +  G+
Sbjct: 196 VRGEVYMAKSDFLALNEQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGE 255

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S++ A  Q  M++  R  GFPVN   ++ +    ++++Y  +   R TL YDIDG+VYK
Sbjct: 256 MSDMPADTQMGMVEMFREWGFPVNPLTKRLHGADELLAHYRAIGLERPTLDYDIDGVVYK 315

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   LQ +LG R+RSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARLEP+ +GG
Sbjct: 316 VDRLDLQTRLGFRSRSPRWAIAHKFPAEQATTILRGIDIQVGRTGALTPVARLEPITVGG 375

Query: 366 ALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
            ++TNATLHNEDYIKG+   G+ +R    DIR+GD V+V+RAG+VIP++VD+I+ +R  D
Sbjct: 376 VVVTNATLHNEDYIKGIGLKGERIRADEHDIRLGDTVIVQRAGDVIPQIVDVILEKRPVD 435

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A PF FP  CP+C S  VR+         A +RCTGGL C+AQ +ER++HFVSR+AF+IE
Sbjct: 436 AVPFHFPHECPVCGSHAVREEGE------AVYRCTGGLTCAAQAVERIRHFVSRNAFDIE 489

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +ED +  I+ PADIFTLQ+RQ  S  K+ENI GFG  SV  LYD+IN 
Sbjct: 490 GLGEKQVEFFFHAEDDSLKIKSPADIFTLQKRQAGSLKKLENIEGFGATSVKKLYDAIND 549

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+  A+ YLSY  F +     +           N+ W 
Sbjct: 550 RREIALNRFLFGLGIRHVGEVNAKRFARSYLSYAAFEKAALEAVPPKEGDRTDKGNEAWQ 609

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            LI V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 610 DLIAVEGIGSIVAEAVVDFYAEPHNREVLAALLAEVTPLDEAARVATGSPVEGKTVVFTG 669

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +SRKTD+++ G   GSKL KA +LG+++++E+ +  
Sbjct: 670 SLERMSRDEAKAMAERYGAKTAGSVSRKTDLVVAGPGAGSKLAKASELGIEVIDEDAWFK 729

Query: 717 LLQQY 721
           L+ + 
Sbjct: 730 LVGEE 734


>gi|306844319|ref|ZP_07476911.1| DNA ligase, NAD-dependent [Brucella sp. BO1]
 gi|306275391|gb|EFM57132.1| DNA ligase, NAD-dependent [Brucella sp. BO1]
          Length = 719

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/724 (46%), Positives = 475/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+    P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEARFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L DIDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRDIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYEFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +           ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDVVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|237815820|ref|ZP_04594817.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A]
 gi|237789118|gb|EEP63329.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A]
          Length = 725

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/730 (46%), Positives = 475/730 (65%), Gaps = 19/730 (2%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M     I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI  
Sbjct: 4   MLYMSDISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEA 63

Query: 61  AFPDLARSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
            FP L R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  
Sbjct: 64  HFPALVRD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLG 120

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
           +  D+SI FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L  
Sbjct: 121 QLPDDSIAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPA 180

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
             P ++EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L F
Sbjct: 181 GAPAVVEVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRF 240

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +  G+ S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YD
Sbjct: 241 FAYAWGEMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARL
Sbjct: 301 IDGVVYKVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EP+ +GG ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++
Sbjct: 361 EPITVGGVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVL 420

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            E     +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR
Sbjct: 421 EEGKKRGEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSR 474

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +AF+IEGLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  L
Sbjct: 475 NAFDIEGLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKL 534

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AH 590
           YD+I+ RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +          
Sbjct: 535 YDAIDARREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDK 594

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
            ++ W  ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K
Sbjct: 595 GSEAWQDMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGK 654

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +VFTG+L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++N
Sbjct: 655 TVVFTGSLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVIN 714

Query: 711 EEQFLFLLQQ 720
           E+ +  L+ +
Sbjct: 715 EDDWFKLVGE 724


>gi|306843233|ref|ZP_07475843.1| DNA ligase, NAD-dependent [Brucella sp. BO2]
 gi|306286556|gb|EFM58135.1| DNA ligase, NAD-dependent [Brucella sp. BO2]
          Length = 719

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+    P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLVLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LY++I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYEAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +           ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|217979603|ref|YP_002363750.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2]
 gi|254781370|sp|B8ETN6|DNLJ_METSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217504979|gb|ACK52388.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2]
          Length = 700

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/720 (41%), Positives = 449/720 (62%), Gaps = 25/720 (3%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M  +   PI+A+++ QAR+E S L  EI+ HD  YY+   P + D+EYD L+RR   +  
Sbjct: 1   MSAK---PIDAMTLAQARREHSRLGAEIAAHDARYYREDAPTVSDAEYDRLRRRYGELES 57

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFP+LA    P+    K+G   +    K+ H IP LSL  +++  ++  F+ R+ RF   
Sbjct: 58  AFPELA---SPDSLTKKVGAAPSEKFAKIRHRIPMLSLGNVFSEAEVEDFVARVRRFLGL 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             + S+  T EPKIDG   ++R+E G+FV AA RGDG  GEDV+A +R I  IP  L   
Sbjct: 115 PTEASLAITAEPKIDGLSCSLRFENGEFVQAATRGDGFEGEDVTANVRTIAEIPARLKGE 174

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            PE++EVRGEVY++  DF A+N      G+  +ANPRNAA+G LR+L+P     R L+FF
Sbjct: 175 PPEVLEVRGEVYMTHADFAAMNVRQQEAGKPLFANPRNAAAGSLRQLDPNITAGRPLHFF 234

Query: 240 VHGLGKT-SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +  G+      A  Q  M+   +  G PVN  +   ++   +++ Y  ++  R+ L YD
Sbjct: 235 AYAWGEILPAPPAGTQMGMVAAFKSYGLPVNPLMVLCHSAEELIAKYRSIEEKRAALGYD 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD   LQ++LG  +RSPRW ++HKF  +QA+T L DI+IQ+GRTG LTPVARL
Sbjct: 295 IDGVVYKVDSLVLQERLGFVSRSPRWAVAHKFPAEQATTVLRDIEIQVGRTGALTPVARL 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV +GG  + NATLHNED I             +D+R+GD V ++RAG+VIP+V+ +++
Sbjct: 355 DPVTVGGVTVANATLHNEDEIAR-----------KDVRIGDTVRIQRAGDVIPQVLGVVL 403

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           N+R  +A+P+ FP  CPIC S  +R+++ KTG      RCTGGL C AQ +ERLKHF SR
Sbjct: 404 NKRPAEAKPYVFPDHCPICGSAAIREIDEKTGVADVVRRCTGGLICPAQAIERLKHFASR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +A +IEGLG +Q++ F+        I  PADIFTL+ R + +  K+++  G+G+ S  NL
Sbjct: 464 NALDIEGLGDKQIEQFYHD----GLITKPADIFTLEARDKAALKKLKDREGYGETSTRNL 519

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           + +I +RR  +L RFI++LGIRHVG   AR LA+++ S+    +E     A  ++    +
Sbjct: 520 FRAIEQRRAPALNRFIYALGIRHVGETNARRLARHFGSFSAL-RETGRAAAPGSEARAEI 578

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  VG+++A+A+ +F+  P N  A++ALL  V+P     E    + +  K +VFTG L
Sbjct: 579 NNIEGVGEVVAEAVADFFAEPHNEEALDALLAHVNPQ-PMEEIVSDTPVAGKTVVFTGAL 637

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R +A+    +LGA V+A +S+KTD++I G   GSKL KA +LGV+ ++EE +L L+
Sbjct: 638 ERMTRDEAKAMAERLGAKVAASVSKKTDLVIAGPGAGSKLAKAAELGVETISEEDWLKLV 697


>gi|23502291|ref|NP_698418.1| NAD-dependent DNA ligase LigA [Brucella suis 1330]
 gi|62290313|ref|YP_222106.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 1 str. 9-941]
 gi|82700237|ref|YP_414811.1| NAD-dependent DNA ligase LigA [Brucella melitensis biovar Abortus
           2308]
 gi|161619368|ref|YP_001593255.1| NAD-dependent DNA ligase LigA [Brucella canis ATCC 23365]
 gi|163843675|ref|YP_001628079.1| NAD-dependent DNA ligase LigA [Brucella suis ATCC 23445]
 gi|189024547|ref|YP_001935315.1| NAD-dependent DNA ligase LigA [Brucella abortus S19]
 gi|225627871|ref|ZP_03785908.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo]
 gi|254689615|ref|ZP_05152869.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
 gi|254694105|ref|ZP_05155933.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
 gi|254697757|ref|ZP_05159585.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
 gi|254704678|ref|ZP_05166506.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
 gi|254708093|ref|ZP_05169921.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
 gi|254710462|ref|ZP_05172273.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
 gi|254730646|ref|ZP_05189224.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
 gi|256031956|ref|ZP_05445570.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
 gi|256113974|ref|ZP_05454757.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160155|ref|ZP_05457849.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
 gi|256257864|ref|ZP_05463400.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
 gi|256369836|ref|YP_003107347.1| DNA ligase [Brucella microti CCM 4915]
 gi|260169093|ref|ZP_05755904.1| NAD-dependent DNA ligase LigA [Brucella sp. F5/99]
 gi|260546856|ref|ZP_05822595.1| DNA ligase [Brucella abortus NCTC 8038]
 gi|260566074|ref|ZP_05836544.1| DNA ligase [Brucella suis bv. 4 str. 40]
 gi|260755142|ref|ZP_05867490.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
 gi|260758361|ref|ZP_05870709.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
 gi|260762187|ref|ZP_05874530.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884154|ref|ZP_05895768.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
 gi|261214403|ref|ZP_05928684.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
 gi|261315595|ref|ZP_05954792.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
 gi|261318033|ref|ZP_05957230.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
 gi|261755371|ref|ZP_05999080.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
 gi|261758598|ref|ZP_06002307.1| DNA ligase [Brucella sp. F5/99]
 gi|265989064|ref|ZP_06101621.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
 gi|265995315|ref|ZP_06107872.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998527|ref|ZP_06111084.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
 gi|297248700|ref|ZP_06932418.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196]
 gi|75496544|sp|Q57C89|DNLJ_BRUAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81752355|sp|Q8FZQ3|DNLJ_BRUSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123768412|sp|Q2YLZ6|DNLJ_BRUA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359236|sp|A9M679|DNLJ_BRUC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359237|sp|B0CHK8|DNLJ_BRUSI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781269|sp|B2S6P4|DNLJ_BRUA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23348266|gb|AAN30333.1| DNA ligase, NAD-dependent [Brucella suis 1330]
 gi|62196445|gb|AAX74745.1| LigA, DNA ligase, NAD-dependent [Brucella abortus bv. 1 str. 9-941]
 gi|82616338|emb|CAJ11395.1| BRCT domain:NAD-dependent DNA ligase:ATP/GTP-binding site motif A
           (P-loop):Zn-finger in NAD-dependent DNA ligase, C4
           type:NAD [Brucella melitensis biovar Abortus 2308]
 gi|161336179|gb|ABX62484.1| DNA ligase, NAD-dependent [Brucella canis ATCC 23365]
 gi|163674398|gb|ABY38509.1| DNA ligase, NAD-dependent [Brucella suis ATCC 23445]
 gi|189020119|gb|ACD72841.1| DNA ligase [Brucella abortus S19]
 gi|225617876|gb|EEH14921.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo]
 gi|255999999|gb|ACU48398.1| DNA ligase [Brucella microti CCM 4915]
 gi|260095906|gb|EEW79783.1| DNA ligase [Brucella abortus NCTC 8038]
 gi|260155592|gb|EEW90672.1| DNA ligase [Brucella suis bv. 4 str. 40]
 gi|260668679|gb|EEX55619.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
 gi|260672619|gb|EEX59440.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675250|gb|EEX62071.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
 gi|260873682|gb|EEX80751.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
 gi|260916010|gb|EEX82871.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
 gi|261297256|gb|EEY00753.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
 gi|261304621|gb|EEY08118.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
 gi|261738582|gb|EEY26578.1| DNA ligase [Brucella sp. F5/99]
 gi|261745124|gb|EEY33050.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
 gi|262553151|gb|EEZ08985.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
 gi|262766428|gb|EEZ12217.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
           Ether]
 gi|264661261|gb|EEZ31522.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
 gi|297175869|gb|EFH35216.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196]
          Length = 719

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/724 (46%), Positives = 474/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +           ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|254702142|ref|ZP_05163970.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
 gi|261752711|ref|ZP_05996420.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
 gi|261742464|gb|EEY30390.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
          Length = 719

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +           ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA     +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTVGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|225852902|ref|YP_002733135.1| NAD-dependent DNA ligase LigA [Brucella melitensis ATCC 23457]
 gi|256263616|ref|ZP_05466148.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9]
 gi|254781270|sp|C0RE59|DNLJ_BRUMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225641267|gb|ACO01181.1| DNA ligase, NAD-dependent [Brucella melitensis ATCC 23457]
 gi|263093668|gb|EEZ17673.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409444|gb|ADZ66509.1| NAD-dependent DNA ligase LigA [Brucella melitensis M28]
 gi|326539150|gb|ADZ87365.1| DNA ligase, NAD-dependent [Brucella melitensis M5-90]
          Length = 719

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/724 (46%), Positives = 474/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +           ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|256255361|ref|ZP_05460897.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
 gi|261222562|ref|ZP_05936843.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
 gi|260921146|gb|EEX87799.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
          Length = 719

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  + RF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVCRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +           ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|17986872|ref|NP_539506.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. 16M]
 gi|256045051|ref|ZP_05447952.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565350|ref|ZP_05835834.1| DNA ligase [Brucella melitensis bv. 1 str. 16M]
 gi|265991477|ref|ZP_06104034.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|81852173|sp|Q8YI56|DNLJ_BRUME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|17982511|gb|AAL51770.1| nad-dependent DNA ligase [Brucella melitensis bv. 1 str. 16M]
 gi|260151418|gb|EEW86512.1| DNA ligase [Brucella melitensis bv. 1 str. 16M]
 gi|263002261|gb|EEZ14836.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 719

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/724 (46%), Positives = 475/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G    L+    V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALAIFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +           ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFKKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|316933200|ref|YP_004108182.1| NAD-dependent DNA ligase [Rhodopseudomonas palustris DX-1]
 gi|315600914|gb|ADU43449.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris DX-1]
          Length = 715

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/728 (42%), Positives = 453/728 (62%), Gaps = 27/728 (3%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           +KK     I  L+  +A+ EL  L   I  HD  YYQ   P I D++YDAL+RR +AI  
Sbjct: 3   VKKNPAPDIATLTKAKAKVELMRLRLVIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQ 62

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP+L      + P   +G        KV H++P LSL   +  +++ +F  R+ RF + 
Sbjct: 63  KFPELV---SASSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKL 119

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
            D  +I    EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L   
Sbjct: 120 DDVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGK 177

Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNF 238
            IP   E+RGEVY+ K DFLALN      G   +ANPRN+A+G LR+ +     +R L F
Sbjct: 178 HIPAACELRGEVYMLKQDFLALNKRQEEAGETVFANPRNSAAGSLRQKDVAVTASRPLKF 237

Query: 239 FVHGLGKTSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           F +  G+ S+   +   Q++MLQ +  +GF VN  +R  +T   I+++Y E+   R++LP
Sbjct: 238 FAYAWGEMSDYPMEEPTQHKMLQWLDHVGFVVNPLIRPCHTVEEILAFYREIGEQRASLP 297

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           YDIDG+VYKVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG +TPVA
Sbjct: 298 YDIDGVVYKVDRLDYQERLGFISRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVA 357

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           RL+PV +GG ++ NATLHNEDYIKG+   G  +R G DIR GD V+V+RAG+VIP++V +
Sbjct: 358 RLQPVTVGGVVVQNATLHNEDYIKGIGNDGSPLRDGVDIREGDTVVVQRAGDVIPQIVSV 417

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           ++++R   A+P+ FP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFV
Sbjct: 418 VLDKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFV 471

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR AF+I+GLG++Q++ F +       ++ PADIFTL+ R   +  K+E + G+G+ SV 
Sbjct: 472 SRLAFDIDGLGEKQIELFHER----GWVQEPADIFTLKARN--AELKLEQLEGYGETSVR 525

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD-- 594
           NL+ +I+ RR I L R +F+LGIRHVG   A+ LA++Y +   F   +        ++  
Sbjct: 526 NLFAAIDARRTIELHRLVFALGIRHVGEGNAKLLARHYGTLDAFLTAMRAAADAQTEEGN 585

Query: 595 ----WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
               +  L  +  +GD++A+A+VEF+   RN+ A++ALL E++  +   +    + +  K
Sbjct: 586 TSEAYQDLDNIAGIGDVVAEAVVEFFAEERNVKALDALLAELTEVLPAEQARRDTAVAGK 645

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +VFTG+L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ 
Sbjct: 646 TVVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLT 705

Query: 711 EEQFLFLL 718
           E+++L L+
Sbjct: 706 EDEWLALI 713


>gi|148560656|ref|YP_001259312.1| NAD-dependent DNA ligase LigA [Brucella ovis ATCC 25840]
 gi|166215401|sp|A5VRG5|DNLJ_BRUO2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148371913|gb|ABQ61892.1| DNA ligase, NAD-dependent [Brucella ovis ATCC 25840]
          Length = 719

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++    Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPVDTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +           ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|75675255|ref|YP_317676.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255]
 gi|123773282|sp|Q3STR7|DNLJ_NITWN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|74420125|gb|ABA04324.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255]
          Length = 716

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/726 (42%), Positives = 459/726 (63%), Gaps = 22/726 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +   P+++L+  QAR E   L  EI  H++ YYQ   P + D+ YDAL+RR +AI   
Sbjct: 4   KSKTPPPVDSLTRSQARVEHKRLALEIETHNERYYQQDAPTVSDATYDALQRRLEAIEAR 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FPDL  +   + P   +G        KV H++P LSL   ++  ++ +F+ RI RF +  
Sbjct: 64  FPDLVTA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDAEVAEFVERIRRFLKLG 120

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
            D+      EPKIDG  +++RYE G  V AA RGDG +GEDV+A +R I  +P  L   N
Sbjct: 121 ADDMPAIVAEPKIDGLSLSLRYENGDLVRAATRGDGFTGEDVTANVRTIADVPHKLNGHN 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP   E+RGEVY+ K DFLALN +    G   +ANPRN+A+G LR+ + +   +R L FF
Sbjct: 181 IPTACELRGEVYMLKEDFLALNKKQQEAGDTVFANPRNSAAGSLRQKDVSITASRPLKFF 240

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ ++  A+ Q +ML+ +R +GF VN  ++  ++   ++++Y  +   R+TL YDI
Sbjct: 241 AYAWGEMTDRPAETQNDMLEWLRDVGFIVNPLIQLCHSVDEVLAFYRRIGEQRATLGYDI 300

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +RSPRW I+HKFA +QA T L  IDIQ+GRTG +TPVARLE
Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQAMTILRGIDIQVGRTGAMTPVARLE 360

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ NATLHNEDYI+GL   G+ +R G D+R+GD V+V+RAG+VIP+VV +I+ 
Sbjct: 361 PVTVGGVVVQNATLHNEDYIRGLGNDGQPIRDGIDLRIGDTVVVQRAGDVIPQVVSVIIE 420

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  +A+ + FP  CPIC S  VR+         A  RCTG L C AQ +ERLKHFVSR 
Sbjct: 421 KRPANAKRYEFPDRCPICGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 474

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++Q+  F+        +  P DIFTLQ R   +  K+ +  G+GDVSV NL+
Sbjct: 475 AFDIDGLGEKQIQEFYDD----GLVMHPVDIFTLQERDARAENKLRDRDGYGDVSVRNLF 530

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------NND 593
            +I+ RR I L R IF+LGIRHVG   A+ LA++Y S ++F   +    A       +++
Sbjct: 531 AAIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGSIESFRSAMTEAAAAQTEAGNDSE 590

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
            +  L  +  +GDI+A A+VEF+  PRN+ A+  LL+E+   +   +    S +  K +V
Sbjct: 591 AYADLTNIGGIGDIVADAVVEFFAEPRNVKALNDLLEEIEV-LPVAQARSDSAVAGKTVV 649

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTG+L+K  R +A+    ++GA  S+ +S+KTD+++ G   GSKL+ A++ GVK+++E++
Sbjct: 650 FTGSLEKFTRDEAKASAERVGAKTSSSVSKKTDLVVAGPGAGSKLKDAEKFGVKVISEDE 709

Query: 714 FLFLLQ 719
           +L L++
Sbjct: 710 WLKLIE 715


>gi|323136604|ref|ZP_08071685.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242]
 gi|322397921|gb|EFY00442.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242]
          Length = 705

 Score =  841 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/719 (41%), Positives = 464/719 (64%), Gaps = 24/719 (3%)

Query: 1   MKKR---QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA 57
           M K+   + + ++ LS  +AR E + L ++I+ +D+ YY+   P++ D+EYDA +RR +A
Sbjct: 1   MTKKPASRPLSVDELSPAEARAEHARLGEDIARYDEAYYREDAPLVPDAEYDAARRRYEA 60

Query: 58  IAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF 117
           +  AFP+L     P     K+G + +    KV H++P LSL  +++ E++  F+ R+ RF
Sbjct: 61  LEKAFPELV---TPESLTRKVGAKPSEKFAKVKHAVPMLSLGNVFSDEEVFDFVARVRRF 117

Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
               +   + FT EPKIDG   ++RYE G+   AA RGDG+ GEDV+A IR +  IP  L
Sbjct: 118 LGLGERARLAFTAEPKIDGLSCSLRYEGGRLAQAATRGDGYEGEDVTANIRTLREIPHKL 177

Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
             + P+++EVRGEVY++  DF ALN+   A G+ P+ANPRNAA+G LR+L+P     R L
Sbjct: 178 HGDAPDVLEVRGEVYMTHADFAALNERQTAAGKPPFANPRNAAAGSLRQLDPKITAGRPL 237

Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           +FF +G G+ SE+  + Q+ +L+    LG  VN   R  +    ++++Y  +++ R+TL 
Sbjct: 238 HFFAYGWGEASELPGETQWSVLEAFGRLGLKVNPLTRLCDGAEEMLAHYRAIEARRATLG 297

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           YDIDG+VYKVD+ SLQ++LG  +R+PRW  +HKF  ++A+T L DI+IQ+GRTG LTPVA
Sbjct: 298 YDIDGVVYKVDDISLQERLGFVSRAPRWAAAHKFPAERATTILRDIEIQVGRTGALTPVA 357

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           RLEPV +GG +++NATLHNED I             +DIRVGD V+V+RAG+VIP++V++
Sbjct: 358 RLEPVTVGGVVVSNATLHNEDEIAR-----------KDIRVGDTVVVQRAGDVIPQIVEV 406

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +  +R   A+P+ FP  CP C S  +R+++ KTG+     RCTG L C AQ +ERLKHF 
Sbjct: 407 VTEKRPHGAKPYHFPHVCPRCGSAALREIDEKTGEADVVRRCTGSLVCPAQAVERLKHFA 466

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR+AF+IEGLG +Q+++F+        I+  +DIFTL+ R + S TKI+N  GFG+ SV 
Sbjct: 467 SRNAFDIEGLGDRQIEYFYDE----GLIKTASDIFTLEERDRASLTKIKNREGFGETSVR 522

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL+ +I  RR I + RF+++LGIRHVG   AR LA+++  +++  +          +   
Sbjct: 523 NLFAAIEARRTIPINRFLYALGIRHVGETNARRLARHFGDFESLRETAREADPGT-EARA 581

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            +  +  VG ++A+A+ +F+  P N   ++ALL +V+      E   SS +  K +VFTG
Sbjct: 582 RIDSIDGVGPVVAEALHDFFAEPHNEKELDALLSQVTLE-PMPEIASSSPVAGKTVVFTG 640

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            L+++ R +A+    + GA V+A +S+KTD+++ G   GSKL KAQ+LG+++++E+++ 
Sbjct: 641 ALERLTRDEAKAQAERFGAKVAASVSKKTDLVVAGPGAGSKLAKAQELGIEVISEDEWF 699


>gi|256061478|ref|ZP_05451622.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
 gi|261325484|ref|ZP_05964681.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
 gi|261301464|gb|EEY04961.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
          Length = 719

 Score =  841 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY+ K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMVKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +ED A  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDSALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +           ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|192292401|ref|YP_001993006.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1]
 gi|254781404|sp|B3QFL8|DNLJ_RHOPT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|192286150|gb|ACF02531.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1]
          Length = 715

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/727 (41%), Positives = 448/727 (61%), Gaps = 27/727 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +    I  L+  +A+ EL  L  EI  HD  YYQ   P I D++YDAL+RR +AI   
Sbjct: 4   KTKPAPDIATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQK 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L  +   + P   +G        KV H++P LSL   +  +++ +F+ R+ RF +  
Sbjct: 64  FPELVNA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFVERVQRFLRLD 120

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
           D  +I    EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L    
Sbjct: 121 DVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKH 178

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF 239
           IP   E+RGEVY+ K DFLALN      G   +ANPRN+A+G LR+ +     +R L FF
Sbjct: 179 IPAACELRGEVYMLKQDFLALNKRQEEAGETVFANPRNSAAGSLRQKDVLVTASRPLKFF 238

Query: 240 VHGLGKTSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            +  G+ S        Q++MLQ +   GF VN  +   ++    +++Y  +   R++LPY
Sbjct: 239 AYAWGEMSTYPMDEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPY 298

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG LTPVAR
Sbjct: 299 DIDGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVAR 358

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L+PV +GG ++ NATLHNEDYI+G+   G+ +R G DIR GD V+V+RAG+VIP++V ++
Sbjct: 359 LQPVTVGGVVVQNATLHNEDYIRGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVV 418

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R   A+P+ FP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFVS
Sbjct: 419 MQKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFVS 472

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R AF+I+GLG++Q++ F +       ++ PADIFTL+ R      K+E + G+G+ SV N
Sbjct: 473 RLAFDIDGLGEKQIELFHER----GWVQEPADIFTLKARNDQ--LKLEQLEGYGETSVRN 526

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--- 594
           L+ +I+ RR I L R IF+LGIRHVG   A+ LA++Y +   F   +        ++   
Sbjct: 527 LFAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNT 586

Query: 595 ---WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
              +  L  +  +GD++A+A+VEF+   RNI A++ALL E++  +   +    + +  K 
Sbjct: 587 SEAYQDLDNIAGIGDVVAEAVVEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKT 646

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +VFTG+L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ E
Sbjct: 647 VVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTE 706

Query: 712 EQFLFLL 718
           +++L L+
Sbjct: 707 DEWLALI 713


>gi|254714455|ref|ZP_05176266.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
 gi|254717353|ref|ZP_05179164.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
 gi|261219183|ref|ZP_05933464.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
 gi|261322244|ref|ZP_05961441.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
 gi|260924272|gb|EEX90840.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
 gi|261294934|gb|EEX98430.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
          Length = 719

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/724 (45%), Positives = 474/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  S+  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSMKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596
           RR I+L RF+F LGIR+VG   A+ LA+ YLSY  F +     +           ++ W 
Sbjct: 535 RREIALHRFLFGLGIRYVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|92116846|ref|YP_576575.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14]
 gi|123083742|sp|Q1QNT2|DNLJ_NITHX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91799740|gb|ABE62115.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14]
          Length = 714

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/726 (43%), Positives = 460/726 (63%), Gaps = 24/726 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +   P+++L+  QA+ E   L  EI  H++ YYQ   P + D+ YDAL++R +AI   
Sbjct: 4   KPKTPPPVDSLTRAQAKIEHKRLALEIETHNERYYQKDAPTVSDAAYDALRQRLEAIEAR 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FPDL  +   N P   +G        KV H++P LSL   ++ E++ +F+ RI RF +  
Sbjct: 64  FPDLITA---NSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDEEVAEFVERIQRFLKLG 120

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180
            D+      EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L   N
Sbjct: 121 PDDIPAIVAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPHNLRGRN 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239
           IP   E+RGEVY+ K DFLALN +    G   +ANPRN+A+G LR+ +     +R L FF
Sbjct: 181 IPTACELRGEVYMLKTDFLALNKKQEDAGDTVFANPRNSAAGSLRQKDVAITASRPLKFF 240

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ ++  A  Q++ML+ ++ +GF VN  +   N+   ++ +Y ++   R++L YDI
Sbjct: 241 AYAWGEMTDRPADTQHDMLEWLKDVGFKVNPLIELCNSVEKVLKFYRKIGEQRASLGYDI 300

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG +TPVARLE
Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQATTILKGIDIQVGRTGAMTPVARLE 360

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV IGG ++ NATLHNEDYIKG+   G+ +R G D+RVGD V+V+RAG+VIP+VV ++++
Sbjct: 361 PVTIGGVVVQNATLHNEDYIKGIGNDGQPIRDGVDLRVGDTVVVQRAGDVIPQVVSVVID 420

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   AQP++FP  CPIC S  VR+         A  RCTG L C AQ +ERLKHFVSR 
Sbjct: 421 KRPNSAQPYAFPHTCPICGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 474

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++Q+  F +       I+ PADIFTL+ R      K+E + GFG+VSV NL+
Sbjct: 475 AFDIDGLGEKQIQEFHER----GWIKEPADIFTLRERN--PKIKLEELEGFGEVSVRNLF 528

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----- 594
            +I+ RR I L R IF+LGIRHVG   A+ LA++Y     F   ++   A   DD     
Sbjct: 529 AAIDARRTIELNRLIFALGIRHVGEGNAKLLARHYGGIDAFRAAMSEAAAAQTDDGNASE 588

Query: 595 -WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
            +  L  +  +GDI+A A+VEF+   RN+ A+  LL+E+   +   +    S +  K +V
Sbjct: 589 AYADLNNISGIGDIVADAVVEFFAETRNVKALNDLLEEIEV-LPVAQARNDSAVAGKTVV 647

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTG+L+K  R +A+    ++GA VS  +S+KTD+++ G   GSKL+ A++ GV++++E++
Sbjct: 648 FTGSLEKFTRDEAKASAERMGAKVSGSVSKKTDLVVAGPGAGSKLKDAEKHGVQVISEDE 707

Query: 714 FLFLLQ 719
           +L L++
Sbjct: 708 WLKLIE 713


>gi|166216284|sp|Q6N423|DNLJ_RHOPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 715

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/727 (41%), Positives = 451/727 (62%), Gaps = 27/727 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +    I  L+  +A+ EL  L  EI  HD  YYQ   P I D++YDAL+RR +AI   
Sbjct: 4   KTKPAPDIATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQK 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L  +   + P   +G        KV H++P LSL   +  +++ +F  R+ RF +  
Sbjct: 64  FPELVNA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLD 120

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
           D  +I    EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L    
Sbjct: 121 DVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKH 178

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP   E+RGEVY+ K DFLALN          +ANPRN+A+G LR+ + T   +R L FF
Sbjct: 179 IPATCELRGEVYMLKQDFLALNKRQEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFF 238

Query: 240 VHGLGKTSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            +  G+ S+   +   Q++MLQ +   GF VN  +   ++    +++Y  +   R++LPY
Sbjct: 239 AYAWGEMSDYPMEEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPY 298

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG +TPVAR
Sbjct: 299 DIDGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVAR 358

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L+PV +GG ++ NATLHNEDYIKG+   G+ +R G DIR GD V+V+RAG+VIP++V ++
Sbjct: 359 LQPVTVGGVVVQNATLHNEDYIKGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVV 418

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R   A+P+ FP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFVS
Sbjct: 419 MEKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFVS 472

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R AF+I+GLG++Q++ F +       ++ PADIFTL+ R   +  K+E + G+G+ SV N
Sbjct: 473 RLAFDIDGLGEKQIELFHER----GWVQEPADIFTLKARN--AELKLEQLEGYGETSVRN 526

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--- 594
           L+ +I+ RR+I L R +F+LGIRHVG   A+ LA++Y +   F   +        ++   
Sbjct: 527 LFAAIDARRSIELHRLVFALGIRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNT 586

Query: 595 ---WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
              +  L  +  +GD++A+A+VEF+   RNI A++ALL E++  +   +    + +  K 
Sbjct: 587 SEAYQDLDNIAGIGDVVAEAVVEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKT 646

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +VFTG+L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ E
Sbjct: 647 VVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTE 706

Query: 712 EQFLFLL 718
           +++L L+
Sbjct: 707 DEWLALI 713


>gi|182677699|ref|YP_001831845.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|254781257|sp|B2IGH4|DNLJ_BEII9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|182633582|gb|ACB94356.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 699

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/714 (42%), Positives = 453/714 (63%), Gaps = 21/714 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE+LS  QA++E   L ++I+ HD  YYQ   P + D+EYDAL+RR +A+  AFP+L  
Sbjct: 6   PIESLSPAQAKREHRRLGEQITEHDRLYYQEDAPRVSDAEYDALRRRYEALETAFPELVS 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +E       KIG        K+ H +P LSL  I++ E++ +F+ R+ RF     D  + 
Sbjct: 66  AE---SLTKKIGAAPAEKFAKIIHKVPMLSLANIFSDEEVGEFVARVRRFLGLGADAPLA 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            + EPKIDG   ++RYE G  V AA RGDG+ GEDV+A +R I  IP  L  + PEI+EV
Sbjct: 123 ISAEPKIDGLSCSLRYEGGYLVQAATRGDGYEGEDVTANVRTIQEIPHQLQGHAPEILEV 182

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEVY++  DF ALN+   A G+  +ANPRN+A+G LR+L+P     R L+FF +  G+ 
Sbjct: 183 RGEVYMTHADFAALNERQEAAGKTIFANPRNSAAGSLRQLDPKVTAGRPLHFFAYAWGEA 242

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q  M+   +  G PVN  ++  ++   ++++Y+++++ R+ L YDIDG+VYKV
Sbjct: 243 SEEPADTQMGMVTAFKAFGLPVNPLMQLCHSAEDLIAHYHDIEARRALLDYDIDGVVYKV 302

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQK+LG  +R+PRW  +HKF  ++A T L DI+IQ+GRTG LTPVARLEP+ +GG 
Sbjct: 303 NSIALQKRLGFVSRAPRWATAHKFPAEKAVTLLRDIEIQVGRTGALTPVARLEPITVGGV 362

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNED I             +DIR+GD V+++RAG+VIP+++  I+++R  DAQ
Sbjct: 363 VVSNATLHNEDEIAR-----------KDIRIGDMVMIQRAGDVIPQILGPILDKRPQDAQ 411

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP+C S  +R+++PKTG      RCTGGL C+AQ +ERLKHF SR+AF+IEGL
Sbjct: 412 PYEFPQVCPVCGSAAIREIDPKTGTADVVRRCTGGLVCAAQVVERLKHFASRNAFDIEGL 471

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++ F+        I  P DIFTLQ R   S  K+++  G+G+ SV NL+ +I  RR
Sbjct: 472 GDKQIEQFYHD----GLIHTPVDIFTLQERDARSLKKLKDREGYGETSVRNLFQAIEARR 527

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I + RFI++LGIRHVG   AR  A+ + ++    + + +     +++   L  V   G 
Sbjct: 528 HIPVNRFIYALGIRHVGETNARRAARAFGTFDAL-RAVASRAEEGSEERSELTNVEGFGP 586

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+AI +F+    N   ++ LL++V+P          S +  K +VFTG L+ + R +A
Sbjct: 587 VVAEAIFDFFHEQHNQDVLDGLLEQVTPE-PMEAVAKESPVAGKTVVFTGALEHMTREEA 645

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +    +LGA V+  +S+KTD+++ G   GSKL KA +L ++ ++EE +L L+ +
Sbjct: 646 KAQAERLGAKVAGSVSKKTDLVVAGPGAGSKLAKAAELNIETISEEDWLKLVGE 699


>gi|294852747|ref|ZP_06793420.1| DNA ligase [Brucella sp. NVSL 07-0026]
 gi|294821336|gb|EFG38335.1| DNA ligase [Brucella sp. NVSL 07-0026]
          Length = 719

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GF VN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFLVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF   QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAGQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +     +           ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|115524134|ref|YP_781045.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53]
 gi|115518081|gb|ABJ06065.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53]
          Length = 730

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/727 (42%), Positives = 452/727 (62%), Gaps = 25/727 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K + +  +  L+  +A+ EL  L  EI  HD  YYQ   P + D++YDAL+RR + I H 
Sbjct: 19  KSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHK 78

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L        P  K+G        KV H++P LSL   ++ +++ +F+ R+ RF    
Sbjct: 79  FPELVSGA---SPSQKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLQRVRRFLNL- 134

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
            D       EPKIDG  +++RYE+G+ V AA RGDG  GEDV+A +R +  IP  L  N 
Sbjct: 135 GDEIPAIVAEPKIDGLSLSLRYEQGELVRAATRGDGSVGEDVTANVRTLKDIPHTLKGNR 194

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239
           IP   E+RGEVY+ K+DFLALN +    G  P+ANPRN+A+G LR+ +     +R L FF
Sbjct: 195 IPAACELRGEVYMLKSDFLALNKKQEEAGEAPFANPRNSAAGSLRQKDVAITASRPLKFF 254

Query: 240 VHGLGKTSEIFAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +  G+ S    +  Q++ML  +   GF VN  +   ++    + +Y  +   R+ LPYD
Sbjct: 255 AYAWGEFSGETPERTQHDMLGWLDHAGFVVNPEITLCHSVDDALVFYRRIGEERAALPYD 314

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q +LG   R+PRW I+HKFA +QA+T L  I+IQ+GRTG LTPVARL
Sbjct: 315 IDGVVYKVDRLDWQARLGFAGRAPRWAIAHKFAAEQATTILEKIEIQVGRTGALTPVARL 374

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG ++ NATLHNEDYIKG+   G+ +R GRDIRVGD V+++RAG+VIP+VVD+++
Sbjct: 375 APVTVGGVVVQNATLHNEDYIKGVGNDGQPLREGRDIRVGDTVIIQRAGDVIPQVVDVVL 434

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R  DA P+ FP  CP+C S  VR+            RCTG L C AQ +ERLKHFVSR
Sbjct: 435 DKRPADAVPYEFPQACPVCGSHAVREDGE------VVRRCTGALICPAQAVERLKHFVSR 488

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            AF+I+GLG++Q++ F +       ++ P DIFTL+ R   +T K+E + G+G+ SV NL
Sbjct: 489 LAFDIDGLGEKQIELFHER----GWVKEPVDIFTLKTRN--ATLKLEELEGYGETSVRNL 542

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---- 594
           + +I+ RR I L R IF+LGIRHVG   A+ LA++Y +   F   +    A   ++    
Sbjct: 543 FAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTIDAFLGAMRAAAAGQTEEGNTS 602

Query: 595 --WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
             +  L  +  +GDI+A+A+VEF+   RN+ A++ALL E+   +   +    S +  K +
Sbjct: 603 EAYQDLDNIGGIGDIVAEAVVEFFAEERNVEALDALLGELDEVLPAAQVKRDSAVAGKTV 662

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTG+L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA++LGV +++E+
Sbjct: 663 VFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDFVVAGEDAGSKLTKARELGVSVLSED 722

Query: 713 QFLFLLQ 719
           ++L L+Q
Sbjct: 723 EWLALIQ 729


>gi|166216283|sp|Q07PR9|DNLJ_RHOP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 715

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/727 (42%), Positives = 452/727 (62%), Gaps = 25/727 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K + +  +  L+  +A+ EL  L  EI  HD  YYQ   P + D++YDAL+RR + I H 
Sbjct: 4   KSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHK 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L        P  K+G        KV H++P LSL   ++ +++ +F+ R+ RF    
Sbjct: 64  FPELVSGA---SPSQKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLQRVRRFLNL- 119

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
            D       EPKIDG  +++RYE+G+ V AA RGDG  GEDV+A +R +  IP  L  N 
Sbjct: 120 GDEIPAIVAEPKIDGLSLSLRYEQGELVRAATRGDGSVGEDVTANVRTLKDIPHTLKGNR 179

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239
           IP   E+RGEVY+ K+DFLALN +    G  P+ANPRN+A+G LR+ +     +R L FF
Sbjct: 180 IPAACELRGEVYMLKSDFLALNKKQEEAGEAPFANPRNSAAGSLRQKDVAITASRPLKFF 239

Query: 240 VHGLGKTSEIFAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +  G+ S    +  Q++ML  +   GF VN  +   ++    + +Y  +   R+ LPYD
Sbjct: 240 AYAWGEFSGETPERTQHDMLGWLDHAGFVVNPEITLCHSVDDALVFYRRIGEERAALPYD 299

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q +LG   R+PRW I+HKFA +QA+T L  I+IQ+GRTG LTPVARL
Sbjct: 300 IDGVVYKVDRLDWQARLGFAGRAPRWAIAHKFAAEQATTILEKIEIQVGRTGALTPVARL 359

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG ++ NATLHNEDYIKG+   G+ +R GRDIRVGD V+++RAG+VIP+VVD+++
Sbjct: 360 APVTVGGVVVQNATLHNEDYIKGVGNDGQPLREGRDIRVGDTVIIQRAGDVIPQVVDVVL 419

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R  DA P+ FP  CP+C S  VR+            RCTG L C AQ +ERLKHFVSR
Sbjct: 420 DKRPADAVPYEFPQACPVCGSHAVREDGE------VVRRCTGALICPAQAVERLKHFVSR 473

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            AF+I+GLG++Q++ F +       ++ P DIFTL+ R   +T K+E + G+G+ SV NL
Sbjct: 474 LAFDIDGLGEKQIELFHER----GWVKEPVDIFTLKTRN--ATLKLEELEGYGETSVRNL 527

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---- 594
           + +I+ RR I L R IF+LGIRHVG   A+ LA++Y +   F   +    A   ++    
Sbjct: 528 FAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTIDAFLGAMRAAAAGQTEEGNTS 587

Query: 595 --WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
             +  L  +  +GDI+A+A+VEF+   RN+ A++ALL E+   +   +    S +  K +
Sbjct: 588 EAYQDLDNIGGIGDIVAEAVVEFFAEERNVEALDALLGELDEVLPAAQVKRDSAVAGKTV 647

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTG+L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA++LGV +++E+
Sbjct: 648 VFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDFVVAGEDAGSKLTKARELGVSVLSED 707

Query: 713 QFLFLLQ 719
           ++L L+Q
Sbjct: 708 EWLALIQ 714


>gi|49475845|ref|YP_033886.1| NAD-dependent DNA ligase LigA [Bartonella henselae str. Houston-1]
 gi|81647763|sp|Q6G2R5|DNLJ_BARHE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49238653|emb|CAF27899.1| DNA ligase [Bartonella henselae str. Houston-1]
          Length = 716

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/719 (46%), Positives = 470/719 (65%), Gaps = 17/719 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  Y +  +P I D+EYDAL+RR   I   FP+L R 
Sbjct: 6   IQNLTALEAASELEWLAKEITRHDVLYNRNDQPEISDAEYDALRRRNAEIEALFPELIR- 64

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P +KIG  ++    K  HS P LSL+  ++ ED+ +F+ R+ RF +  +   +  
Sbjct: 65  --PDSPSHKIGAPISEKFEKSVHSQPMLSLDNAFSSEDVSEFMERVRRFLRLPETQMLEI 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE+G+ V AA RGDG+ GE+V+A  R I  IP+VL    P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEQGRLVCAATRGDGYVGENVTANARTISDIPQVLQGKFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ + DF ALN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMRRADFQALNVNQQEKGKLAFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           EIFA+ Q  M++K++  GF +N  +++  +   ++SYY++++  R  L YDIDG+VYKV+
Sbjct: 243 EIFAESQMGMMEKLKEYGFVINPLIKKIKSLEELISYYHDIEERRHALSYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  +RSPRW I+HKF  ++A T L  IDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLMLQMRLGFVSRSPRWAIAHKFPAEKAMTVLEGIDIQVGRTGALTPVARLAPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ITNA+LHNEDYIKG+ + G+ +R G DIRVGD V+V+RAG+VIP+++DI+  +R  DA  
Sbjct: 363 ITNASLHNEDYIKGIGSKGEPIREGNDIRVGDTVIVQRAGDVIPQIIDIVAEKRSKDASA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S  VR++        A  RCTGGL C AQ +ER++HFVSR+AF+IEGLG
Sbjct: 423 FVFPYLCPACGSYAVREIGE------AVRRCTGGLICPAQAIERIRHFVSRNAFDIEGLG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K+Q++FFF+ +D    I  PADIFTLQRRQ+ S   +EN+ GFG VSV  LYD+IN RR 
Sbjct: 477 KKQVEFFFQIQDETLCIHTPADIFTLQRRQEKSLVHLENMEGFGTVSVRKLYDAINARRK 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI-------NNIIAHNNDDWLSLIR 600
           I L RF+F+LGIR+VG   AR LA+ Y +Y  F           + +    N+ W+ L  
Sbjct: 537 IPLSRFLFALGIRYVGEVNARRLARAYQNYTAFETAAMAATMPDDKVGKEGNEAWMELTN 596

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G  + +AI++FY+   N   +  LL EV+P         SS I  K +VFTGTL +
Sbjct: 597 IEGIGPQVGEAIIDFYKEVHNREVLSGLLCEVTPLDEESVMTASSPIAGKIIVFTGTLTR 656

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A+    +LGA  S  LS+KT++++ G   GSKL KAQ+LGV++++EE +L L++
Sbjct: 657 MSRDEAKALAERLGAKTSGSLSKKTNLLVAGVGGGSKLTKAQELGVEVIDEEAWLQLIE 715


>gi|163868703|ref|YP_001609915.1| NAD-dependent DNA ligase LigA [Bartonella tribocorum CIP 105476]
 gi|190359235|sp|A9IW95|DNLJ_BART1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161018362|emb|CAK01920.1| DNA ligase [Bartonella tribocorum CIP 105476]
          Length = 719

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/723 (46%), Positives = 472/723 (65%), Gaps = 17/723 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L++ +A +EL  L +EI+ HD  Y +  +P I D+EYDAL+RR   I   FP+L R 
Sbjct: 6   IKNLTVVEAERELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRV 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P +KIG  ++    K  H+ P LSL+  ++ ED+ +F+ RI RF +  +   +  
Sbjct: 66  ---DSPSHKIGAAISEKFEKSVHAQPMLSLDNAFSAEDVYEFVERIRRFLRLPETQVLEI 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYEKG+ V AA RGDG  GE+V+A  R I  IP+VL  + P++IEVR
Sbjct: 123 TAEPKIDGLSLSLRYEKGRLVRAATRGDGTVGENVTANARTIADIPQVLQGDFPDVIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ + DF ALN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           EIFA+ Q EM+ K++  GF +N   +   T   I+SYY +++  R +L YDIDG+VYKV+
Sbjct: 243 EIFAESQMEMMTKLKEYGFVINPLTKVFKTVEDIISYYRDIEERRYSLNYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQK+LG  +RSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ IGG +
Sbjct: 303 DLMLQKRLGFVSRSPRWAIAHKFPAEKAMALLEDIDIQVGRTGALTPVARLTPITIGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNA+LHNEDYIKG+   G+ +R GRDIR+GD V+++RAG+VIP+VVDI++ +R  D+  
Sbjct: 363 VTNASLHNEDYIKGIGHKGEPIREGRDIRIGDTVIIQRAGDVIPQVVDIVLEKRQKDSSA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S  VR++        A  RCTGGL C AQ +ER++HFV+R+AF+IEGLG
Sbjct: 423 FVFPDLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVARNAFDIEGLG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K+Q++FFF ++D A  I  PADIFTL+RRQ+ S  ++ENI GFG VSV  LYD+IN RR 
Sbjct: 477 KKQVEFFFHAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARRE 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII-------AHNNDDWLSLIR 600
           I L RF+F+LGIRHVG   AR LA+ Y +Y  F       +          N+ W+ L  
Sbjct: 537 IPLSRFLFALGIRHVGEVNARRLARAYQTYTAFETAAMEALMPCKQDNKEGNEAWMELTN 596

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G  +  AIV+FYQ   N   +  LL+E++P         SS I  K +VFTGTL  
Sbjct: 597 IEGIGPQVGSAIVDFYQEAHNREVLAVLLEEITPLDEVPIMTASSPIAEKIIVFTGTLAH 656

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R +A+    +LGA  S  LS+KTD+++ G   GSKL KAQ+ GV++++EE ++ L++ 
Sbjct: 657 MSRDEAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLTKAQEFGVQVIDEEAWMRLIKG 716

Query: 721 YNT 723
           +N 
Sbjct: 717 HNI 719


>gi|240850882|ref|YP_002972282.1| DNA ligase [Bartonella grahamii as4aup]
 gi|240268005|gb|ACS51593.1| DNA ligase [Bartonella grahamii as4aup]
          Length = 719

 Score =  831 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/722 (46%), Positives = 472/722 (65%), Gaps = 17/722 (2%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L+  +A  EL  L +EI+ HD  Y +  +P I D+EYDAL+RR   I   FP+L R  
Sbjct: 7   KNLTAVEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRV- 65

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P +KIG  ++    K  H+ P LSL+  ++ ED+ +F+ RI RF +  +   +  T
Sbjct: 66  --DSPSHKIGAPISEKFEKSVHAQPMLSLDNAFSSEDVTEFVERIRRFLRLPETQVLEIT 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            EPKIDG  +++RYEKG+ V AA RGDG  GE+V+A  R I  IP+VL  + P+IIEVRG
Sbjct: 124 AEPKIDGLSLSLRYEKGRLVGAATRGDGTVGENVTANARTIADIPQVLQGDFPDIIEVRG 183

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+ + DF ALN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ SE
Sbjct: 184 EVYMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVSE 243

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           I A+ Q EM++K++  GF +N   +   T   I+SYY++++  R +L YDIDG+VYKV++
Sbjct: 244 ILAESQMEMMKKLKEYGFVINPLTKAFKTLEEIISYYHDIEECRHSLSYDIDGIVYKVND 303

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQK+LG  +RSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ +GG ++
Sbjct: 304 LMLQKRLGFVSRSPRWAIAHKFPAEKAIALLKDIDIQVGRTGALTPVARLTPITVGGVVV 363

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNA+LHNEDYIKG+   G+ +R GRDIRVGD V+V+RAG+VIP+V+D+I+ +R  DA  F
Sbjct: 364 TNASLHNEDYIKGIGHKGEPIREGRDIRVGDSVIVQRAGDVIPQVIDVIIEKRPKDAAVF 423

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C S  VR++        A  RCTGGL C AQ +ER++HFV+R+AF+IEGLGK
Sbjct: 424 IFPHLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVARNAFDIEGLGK 477

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +Q++FFF ++D A  I  PADIFTL+RRQ+ S  ++ENI GFG VSV  LYD+IN RR I
Sbjct: 478 KQVEFFFYAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARREI 537

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE-------INNIIAHNNDDWLSLIRV 601
            L RF+F+LGIRHVG   AR LA+ Y +Y  F           +      N+ W+ L  +
Sbjct: 538 PLSRFLFALGIRHVGEVNARRLARTYKNYTAFETTAMGALMPCDKANEKGNEAWMELTNI 597

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  +  AIV+FYQ   N   +  LL+EV+P         SS I  K +VFTGTL  +
Sbjct: 598 EGIGPQVGSAIVDFYQEAHNREVLSVLLEEVTPLDEEPITTASSPIAEKTIVFTGTLAHM 657

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+    +LGA  S  LS+KTD+++ G   GSKL KA++LGV++++EE +L L++++
Sbjct: 658 SRDEAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLAKAEELGVEVIDEETWLQLIEEH 717

Query: 722 NT 723
           + 
Sbjct: 718 DV 719


>gi|49474446|ref|YP_032488.1| NAD-dependent DNA ligase LigA [Bartonella quintana str. Toulouse]
 gi|81646941|sp|Q6FZ81|DNLJ_BARQU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49239950|emb|CAF26355.1| DNA ligase [Bartonella quintana str. Toulouse]
          Length = 719

 Score =  831 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/727 (46%), Positives = 471/727 (64%), Gaps = 20/727 (2%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K +   I+ L+  +A  EL  L +EI+ HD  Y +  +P I D+EYDAL+RR   I  
Sbjct: 1   MNKDE---IKNLTALEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEA 57

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP+L RS   + P +KIG  ++    K  H+   LSL+  ++ ED+ +FI RI RF + 
Sbjct: 58  LFPELIRS---DSPSHKIGAPVSEKFEKSVHAQAMLSLDNAFSSEDICEFIVRIRRFLRL 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                +  T EPKIDG  +++RYEKG+ V AA RGDG+ GE+V+A  R I  IP+VL   
Sbjct: 115 PATQILEMTAEPKIDGLSLSLRYEKGRLVCAATRGDGYIGENVTANARTISDIPKVLRGE 174

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P+IIEVRGEVY+ + +F ALN      G+  +ANPRNAA+G LR+L+P    +R L+FF
Sbjct: 175 FPDIIEVRGEVYMRRENFQALNMSQQEKGKFVFANPRNAAAGSLRQLDPRITASRKLHFF 234

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ SE FA  Q EM++K++  GF +N   +   T   I+SYY++++  R +L YDI
Sbjct: 235 AYACGEVSETFAASQMEMMKKLKEYGFFINPLTKSFKTLEEIISYYHDIEECRHSLSYDI 294

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV++  LQ +LG  +RSPRW ++HKF  ++A   L  IDIQ+GRTG LTPVARL 
Sbjct: 295 DGIVYKVNDLKLQMRLGFVSRSPRWAVAHKFPAEKAMALLEGIDIQVGRTGALTPVARLA 354

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           P+ IGG ++TNA+LHNEDYIKG+   G+ +R GRDIRVGD V+V+RAG+VIP++VDII  
Sbjct: 355 PITIGGVVVTNASLHNEDYIKGIGHKGESIREGRDIRVGDTVIVQRAGDVIPQIVDIIAE 414

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   A  F FP  CP C S  VR++        +  RCTGGL C AQ +ER++HFVSR+
Sbjct: 415 KRPKGASAFVFPHLCPACGSHAVREVGE------SVRRCTGGLICPAQAIERIRHFVSRN 468

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLGK+Q++FFF  +D A  I  PADIFTLQRRQ+ +  ++EN+ GFG VSV  LY
Sbjct: 469 AFDIEGLGKKQVEFFFHIQDEALCIHTPADIFTLQRRQEKALVRLENMEGFGTVSVRKLY 528

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-------QEINNIIAHNN 592
           ++IN RR + L RF+F+LGIRH+G   AR LA  Y +Y  F           + +    N
Sbjct: 529 NAINMRRKVPLSRFLFALGIRHIGEVNARRLAHAYQNYTAFETVAMAATMPYDKVGEEGN 588

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           + WL L  +  +G  + +AI++FYQ   N   + ALL+EV+P    +    SS I  K +
Sbjct: 589 EAWLELTNIEGIGPQVGEAIIDFYQEAHNREVLAALLREVTPLDEENVMTASSPIAGKTI 648

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTGTL ++ R +A+    +LGA  S  LS+KTD+++ G   GSKL KAQ LGV++++EE
Sbjct: 649 VFTGTLARMSRDEAKALAERLGAKTSGSLSKKTDLLVAGSAVGSKLAKAQGLGVEVIDEE 708

Query: 713 QFLFLLQ 719
            +L L++
Sbjct: 709 AWLQLIE 715


>gi|153009084|ref|YP_001370299.1| NAD-dependent DNA ligase LigA [Ochrobactrum anthropi ATCC 49188]
 gi|166216221|sp|A6WZR6|DNLJ_OCHA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151560972|gb|ABS14470.1| DNA ligase, NAD-dependent [Ochrobactrum anthropi ATCC 49188]
          Length = 721

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/727 (45%), Positives = 472/727 (64%), Gaps = 21/727 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P+E L+  +A  EL  L +EI++HD+ Y+   +P I D+EYDALKRR DAI   FP L 
Sbjct: 4   TPVEKLTEPEAVSELERLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P  ++G        +V H+ P LSL   ++ +D+R F+  +YRF     DNSI
Sbjct: 64  RT---DSPSLRVGTAPVSKFAQVVHARPMLSLGNAFSDDDVRDFVGSVYRFLGPLPDNSI 120

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  ++IRYE G  +  A RGDG +GE+V+  IR I  IP  L    P ++E
Sbjct: 121 AFTAEPKIDGLSMSIRYENGILISGATRGDGTTGENVTTNIRTIAEIPNRLPAGAPSVVE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY++K+DFLALN++M A G++ Y NPRN A+G LR+L+     +R L FF +  G+
Sbjct: 181 VRGEVYMAKSDFLALNEQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGE 240

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S++ A  Q  M++  R  GFPVN   ++ +    ++++Y  +   R+ L YDIDG+VYK
Sbjct: 241 MSDMPADTQMGMVEIFREWGFPVNPLTKRLHGADELLAHYRAIGLERAQLDYDIDGVVYK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   LQ +LG R+RSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARLEP+ +GG
Sbjct: 301 VDRLDLQTRLGFRSRSPRWAIAHKFPAEQATTILRGIDIQVGRTGALTPVARLEPITVGG 360

Query: 366 ALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
            ++TNATLHNEDYIKG+   G+ +R    DIRVGD V+V+RAG+VIP++VD+++ +R  D
Sbjct: 361 VVVTNATLHNEDYIKGIGLKGERIRADEHDIRVGDTVIVQRAGDVIPQIVDVVLEKRKAD 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A PF FP  CP+C S  VR+         A +RCTGGL C+AQ +ER++HFVSR+AF+IE
Sbjct: 421 ATPFVFPHECPVCHSHAVREEGE------AVYRCTGGLTCAAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGDVSVTNLYDSIN 543
           GLG++Q++FFF +ED    I+ PADIFTLQ+RQ  S   K+ENI GFG  SV  LYD+IN
Sbjct: 475 GLGEKQVEFFFHAEDDKLKIKSPADIFTLQQRQAESPLKKLENIEGFGATSVKKLYDAIN 534

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDW 595
            RR I+L RF+F LGIRHVG   A+  A+ YLSY  F +     +           N+ W
Sbjct: 535 DRREIALHRFLFGLGIRHVGEVNAKRFARAYLSYAAFEEAALEAVPPKEGDRTDKGNEAW 594

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVF 654
             LI V  +G I+A+A+V+FY  P N   ++ L K  V+P       +  S +E K +VF
Sbjct: 595 QELIAVEGIGSIVAEAVVDFYAEPHNREVLDNLFKAGVTPVDEVALVSTGSPVEGKTVVF 654

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG+++++E+ +
Sbjct: 655 TGSLERMSRDEAKAMAERYGAKTAGSVSKKTDLVVAGPGAGSKLAKASELGIEVIDEDAW 714

Query: 715 LFLLQQY 721
             L+ + 
Sbjct: 715 FTLVGEE 721


>gi|85714986|ref|ZP_01045971.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A]
 gi|85698183|gb|EAQ36055.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A]
          Length = 705

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/726 (42%), Positives = 450/726 (61%), Gaps = 33/726 (4%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +   P+++L+  QAR E   L  EI  H++ YYQ   P + D+ YDA++RR +AI   
Sbjct: 4   KSKVPPPVDSLTRSQARVEHKRLVLEIEAHNERYYQQDAPTVSDAAYDAMQRRLEAIEAR 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FPDL  +   + P   +G        KV H++P LSL   ++  ++ +F+ RI RF +  
Sbjct: 64  FPDLVTA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDAEVAEFVERIRRFLKLG 120

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180
            D+      EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L   +
Sbjct: 121 ADDIPAIVAEPKIDGLSLSLRYEHGELVRAATRGDGFTGEDVTANVRTIRDVPHTLRGRD 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239
           IP   E+RGEVY+ K DFLALN +  A G   +ANPRN+A+G LR+ +     +R L FF
Sbjct: 181 IPAACELRGEVYMLKEDFLALNKKQEAAGDTVFANPRNSAAGSLRQKDVAITASRPLKFF 240

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ ++  A+ Q++ML+ +R +GF VN  +   ++   ++ +Y  +   R+TL YDI
Sbjct: 241 AYAWGEMTDRPAETQHDMLKWLRDVGFMVNPLIELCSSVEQVLQFYRRIGEQRATLGYDI 300

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +RSPRW I+HKFA +QA T L  IDIQ+GRTG +TPVARLE
Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQAMTILRGIDIQVGRTGAMTPVARLE 360

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ NATLHNED I             +DI VGD V+V+RAG+VIP+VV +I+ 
Sbjct: 361 PVTVGGVVVQNATLHNEDEITR-----------KDIHVGDTVVVQRAGDVIPQVVSVIIG 409

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  +AQP+ FP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFVSR 
Sbjct: 410 KRPRNAQPYVFPHKCPVCGSHAVREEGE------AVRRCTGTLICPAQAVERLKHFVSRL 463

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++Q+  F+        I  P DIFTLQ+R   +T K+ +  G+GDVSV NL+
Sbjct: 464 AFDIDGLGEKQIQEFYDD----GLIMHPVDIFTLQKRDARATKKLRDREGYGDVSVRNLF 519

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----- 594
            +I+ RR I L R IF+LGIRHVG   A+ LA++Y   +NF   +        D+     
Sbjct: 520 AAIDARRKIELNRLIFALGIRHVGEGNAKLLARHYGGIENFRSAMAEAAGAQTDEGNASE 579

Query: 595 -WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
            +  L  +  +G+I+A A+VEF+  PRN+ A+  LL+E+   +   +    S +  K +V
Sbjct: 580 AYADLNNIGGIGEIVANAVVEFFAEPRNVKALNDLLEEIEV-LPVAQTRSDSAVAGKTVV 638

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTG+L+K  R +A+    ++GA VS  +S+KTD+++ G   GSKL+ A++ GV++++E++
Sbjct: 639 FTGSLEKFTRDEAKASAERMGARVSGSVSKKTDLVVAGPGAGSKLKDAEKFGVRVISEDE 698

Query: 714 FLFLLQ 719
           +L L++
Sbjct: 699 WLKLIE 704


>gi|83942325|ref|ZP_00954786.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36]
 gi|83846418|gb|EAP84294.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36]
          Length = 706

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/714 (41%), Positives = 434/714 (60%), Gaps = 15/714 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
             ++ LS E+A+ EL+ L   +   +  Y+    P + D+EYD LKRR  AI   FP L 
Sbjct: 5   TALQELSEEEAKAELARLADLLGRANTAYHTQDAPDLSDAEYDRLKRRNQAIEERFPGLK 64

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P +K+G        KV H +  LSL   +  ED+  F  RI ++        +
Sbjct: 65  RA---DSPSDKVGATPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPSGTPL 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I TIP  +    P ++E
Sbjct: 122 AFTAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDTIPTRIK-GAPALLE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           VRGEVY+  +DF ALN    A G K +ANPRNAA+G LR+L+P     R L FF +  G 
Sbjct: 181 VRGEVYMRHDDFDALNARQTANGGKTFANPRNAAAGSLRQLDPEITRARPLAFFAYAWGA 240

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A+ Q++ +++++  GF  N      +    ++++Y +++  R+TL YDIDG+VYK
Sbjct: 241 LSAPLAESQFQAIERLKAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++  LQ +LG R+ +PRW I+HKF  + A TRL DI IQ+GRTG L+PVARL PV +GG
Sbjct: 301 VNDLGLQDRLGFRSTTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLHPVTVGG 360

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYIKGLD+ G  +R G+DIRVGD V V RAG+VIPK+ D+ + +R  DA
Sbjct: 361 VVVSNATLHNEDYIKGLDSKGARIREGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPEDA 420

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + + +P+ CP C S  +R+      +  A  RCTGGL C AQ +E+LKHFVSR AF+I+G
Sbjct: 421 RAYVYPTTCPECGSDAIRE------EGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIDG 474

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F+        I  PADIFTL+ R  +   +++N  G+G+ S   L+ +I  +
Sbjct: 475 LGAKQVEQFYGD----GWIAEPADIFTLKTRYGSGMQQLKNREGWGEKSADKLFQAIEDK 530

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R ISL R IF+LGIRHVG   +  +A++Y S+  F   + +  + +   W  LI V  VG
Sbjct: 531 RKISLSRLIFALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGDGPAWDDLIGVDGVG 590

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++AQ++V  +       +++ L+ E+S           S +  K +VFTGTL+K+ R +
Sbjct: 591 QVMAQSLVSTFAQEAERASIDRLVTELSVQDVALPDTEGSPVAGKTVVFTGTLEKMTRAE 650

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+    +LGA VS  +S KTDI++ G   GSK +KA  LG++ ++E+ +L L+ 
Sbjct: 651 AKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALID 704


>gi|254488738|ref|ZP_05101943.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101]
 gi|214045607|gb|EEB86245.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101]
          Length = 706

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/716 (42%), Positives = 442/716 (61%), Gaps = 15/716 (2%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           + I ++ LS +QA +EL  L   ++  +  YY    P I D+EYD LKRR   I   FP 
Sbjct: 3   EHIAVQDLSKDQAAEELRRLSGLLAQANRQYYAEDAPQISDAEYDCLKRRNTEIETRFPS 62

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R+   + P  +IG   +    KV H +P LSL   +  ED+ +F  RI ++     D 
Sbjct: 63  LKRA---DSPTEQIGATPSEGFSKVRHEVPMLSLGNAFEDEDVVEFDGRIRKYLGLPSDA 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + FT EPKIDG  +++RYE G  V AA RGDG  GE+V+A  R I TIP+ L  + P++
Sbjct: 120 DLDFTAEPKIDGLSLSLRYENGLLVQAATRGDGAVGENVTANARTIQTIPKKL-DSAPDV 178

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243
           IE+RGEVY+S +DF ALN      G K +ANPRNAA+G LR+L+     +R L FF +  
Sbjct: 179 IEIRGEVYMSHDDFDALNARQGERGGKLFANPRNAAAGSLRQLDAEITRSRPLKFFAYAW 238

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G  SE   + Q E +++M  +GF  N      ++   ++  Y ++++ R+TL YDIDG+V
Sbjct: 239 GALSEPLGQTQSEAIKRMENMGFCTNPLTELCSSVAEMIDQYRKIEAQRATLGYDIDGVV 298

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV++ +LQ++LG R+ +PRW I+HKF  + A T L DI IQ+GRTG L+PVARL+PV +
Sbjct: 299 YKVNDLALQERLGFRSTTPRWAIAHKFPAELAWTTLEDITIQVGRTGALSPVARLKPVTV 358

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++NATLHNEDYIKG+D+ G  +R G+DIRVGD V V RAG+VIPK+ D+ ++ R  
Sbjct: 359 GGVVVSNATLHNEDYIKGVDSKGNQIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSRRPS 418

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+ PF FP+ CP C S  +R+      +  A  RC GGL C AQ +E+LKHFVSR AF+I
Sbjct: 419 DSVPFDFPTICPECGSDAIRE------EGDAVRRCMGGLVCPAQAVEKLKHFVSRAAFDI 472

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG +Q++ F+        I  PADIFTLQ R  +   +++N  G+G+ S T L+ +I+
Sbjct: 473 DGLGAKQVEQFYTD----GWIAEPADIFTLQARYGSGVQQLKNREGWGEKSATKLFQAID 528

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            +R I L R IF+LGIRHVG   +  +A +Y ++  F   + N    +   W  LI V  
Sbjct: 529 DKRTIPLARLIFALGIRHVGEAASNLIALHYGTWSAFITAMENAREASGPAWDDLISVDG 588

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG ++AQ++V  +       +++ L+ E+S           S ++ K +VFTGTL+K+ R
Sbjct: 589 VGQVMAQSLVSTFAQEAERASIDRLVAELSIQDATRPDTQGSPVDGKTVVFTGTLEKMTR 648

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+    +LGA VS  +S KTDI++ G   GSK +KA +LG++I++E+ +L L+ 
Sbjct: 649 AEAKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAAELGIEILDEDAWLDLIA 704


>gi|83953544|ref|ZP_00962265.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1]
 gi|83841489|gb|EAP80658.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1]
          Length = 706

 Score =  826 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/714 (41%), Positives = 431/714 (60%), Gaps = 15/714 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
             ++ LS E+A+ EL+ L   +   +  Y+    P + D+EYD LKRR  AI   FP L 
Sbjct: 5   TALQELSEEEAKAELARLADLLGRANAAYHTQDAPDLSDAEYDRLKRRNQAIEERFPRLK 64

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P +K+G        KV H +  LSL   +  ED+  F  RI ++        +
Sbjct: 65  RA---DSPSDKVGAAPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPSGTPL 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I TIP  +    P ++E
Sbjct: 122 AFTAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDTIPTRIQ-GAPALLE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           VRGEVY+  +DF ALN    A G K +ANPRNAA+G LR+L+      R L FF +  G 
Sbjct: 181 VRGEVYMRHHDFDALNARQTANGGKTFANPRNAAAGSLRQLDAEITRARPLAFFAYAWGA 240

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A  Q+  ++++   GF  N      +    ++++Y +++  R+TL YDIDG+VYK
Sbjct: 241 LSAPLADTQFHAIERLSAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ +LQ +LG R+ +PRW I+HKF  + A TRL DI IQ+GRTG L+PVARL+PV +GG
Sbjct: 301 VNDLALQDRLGFRSTTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLKPVTVGG 360

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYIKGLD+ G  +R G+DIRVGD V V RAG+VIPK+ D+ + +R  D+
Sbjct: 361 VVVSNATLHNEDYIKGLDSKGASIRDGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPEDS 420

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + + +P+ CP C S  +R+      +  A  RCTGGL C AQ +E+LKHFVSR AF+I+G
Sbjct: 421 EAYVYPTTCPECGSDAIRE------EGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIDG 474

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F+        I  PADIFTL+ R  +   +++N  G+G+ S   L+ +I  +
Sbjct: 475 LGAKQVEQFYAD----GWIAEPADIFTLKARYGSGMQQLKNREGWGEKSADKLFQAIEDK 530

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I L R IF+LGIRHVG   +  +A++Y S+  F   + +  + +   W  LI V  VG
Sbjct: 531 RKIPLSRLIFALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGDGPAWDDLIGVDGVG 590

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++AQ++V  +       +++ L+ E+S           S +  K +VFTGTL+K+ R +
Sbjct: 591 QVMAQSLVSTFAQEAERASIDRLVTELSVQDVARPDTEGSPVAGKTVVFTGTLEKMTRAE 650

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+    +LGA VS  +S KTDI++ G   GSK +KA  LG++ ++E+ +L L+ 
Sbjct: 651 AKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALID 704


>gi|39936579|ref|NP_948855.1| DNA ligase [Rhodopseudomonas palustris CGA009]
 gi|39650435|emb|CAE28958.1| DNA ligase [Rhodopseudomonas palustris CGA009]
          Length = 692

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/706 (42%), Positives = 441/706 (62%), Gaps = 27/706 (3%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L  EI  HD  YYQ   P I D++YDAL+RR +AI   FP+L  +   + P   +G   
Sbjct: 2   RLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNA---SSPTQTVGAAP 58

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                KV H++P LSL   +  +++ +F  R+ RF +  D  +I    EPKIDG  +++R
Sbjct: 59  ARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLDDVPAI--VAEPKIDGLSLSLR 116

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLAL 201
           YE G+ V AA RGDG +GEDV+A +R I  +P  L    IP   E+RGEVY+ K DFLAL
Sbjct: 117 YENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKHIPATCELRGEVYMLKQDFLAL 176

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK--GQYEML 258
           N          +ANPRN+A+G LR+ + T   +R L FF +  G+ S+   +   Q++ML
Sbjct: 177 NKRQEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFFAYAWGEMSDYPMEEPTQHKML 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           Q +   GF VN  +   ++    +++Y  +   R++LPYDIDG+VYKVD    Q++LG  
Sbjct: 237 QWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPYDIDGVVYKVDRLDYQERLGFV 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           +RSPRW I+HKFA +QA+T L  IDIQ+GRTG +TPVARL+PV +GG ++ NATLHNEDY
Sbjct: 297 SRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVARLQPVTVGGVVVQNATLHNEDY 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           IKG+   G+ +R G DIR GD V+V+RAG+VIP++V +++ +R   A+P+ FP  CP+C 
Sbjct: 357 IKGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVMEKRPAGAEPYHFPHKCPVCG 416

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S  VR+         A  RCTG L C AQ +ERLKHFVSR AF+I+GLG++Q++ F +  
Sbjct: 417 SHAVREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDIDGLGEKQIELFHER- 469

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++ PADIFTL+ R   +  K+E + G+G+ SV NL+ +I+ RR+I L R +F+LG
Sbjct: 470 ---GWVQEPADIFTLKARN--AELKLEQLEGYGETSVRNLFAAIDARRSIELHRLVFALG 524

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------WLSLIRVPLVGDIIAQAI 612
           IRHVG   A+ LA++Y +   F   +        ++      +  L  +  +GD++A+A+
Sbjct: 525 IRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNTSEAYQDLDNIAGIGDVVAEAV 584

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           VEF+   RNI A++ALL E++  +   +    + +  K +VFTG+L K  R +A+    +
Sbjct: 585 VEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKTVVFTGSLSKFTRDEAKAAAER 644

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ E+++L L+
Sbjct: 645 LGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTEDEWLALI 690


>gi|319899147|ref|YP_004159240.1| DNA ligase [Bartonella clarridgeiae 73]
 gi|319403111|emb|CBI76669.1| DNA ligase [Bartonella clarridgeiae 73]
          Length = 718

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/720 (45%), Positives = 464/720 (64%), Gaps = 16/720 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  YY+  +P I D+EYDAL+RR  AI + FP+L R+
Sbjct: 6   IKNLTALEAASELEWLAKEIARHDVLYYRDDQPEISDAEYDALRRRNGAIENLFPELIRA 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  KIG  ++    K  H+ P LSL+  +N +D+ +F+ RI RF +  +   I  
Sbjct: 66  ---DSPTFKIGAPISEKFEKSVHAQPMLSLDNAFNFKDVSEFVERIRRFLRFPETQIIKM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK V A  RG+G+ GE+V+   R I  IP+VL    P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYETGKLVRAVTRGNGYIGENVTTNARTIADIPQVLQGKFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGQKDFQLLNISQQKEGKLAFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEMS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+  + Q EM+++++  GF +N   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPVESQMEMMERLKEYGFIINPLTKVFEKLEDLISYYHFIEECRQSLDYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  +RSPRW I+HKF  ++A   L  IDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLVLQTRLGFVSRSPRWAIAHKFPAEKAIALLESIDIQVGRTGALTPVARLTPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNA+LHNEDYIKG+    + +R GRDIRVGD V+++RAG+VIP++VD++V +R  D   
Sbjct: 363 VTNASLHNEDYIKGIGYKNEPIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPRDTPA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C S  VR+         A  RCTGGL CSAQ +ER+ HFVSR+AF+IEG G
Sbjct: 423 FVFPHLCPVCGSHAVREKGE------AVRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++FFF ++D    I  PADIFTLQRRQ+ S  ++EN+ GFG VSV  LY++IN RR 
Sbjct: 477 RKQVEFFFHAQDETLCIHSPADIFTLQRRQENSLKRLENMEGFGVVSVRKLYNAINARRK 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601
           +SL RF+F+LGIRHVG   A+ LA+ Y +Y  F     + I      +  N+ W+ L  +
Sbjct: 537 VSLSRFLFALGIRHVGEVNAQRLARAYQNYTAFETAAMSAIMPSDKFSKGNEIWVELTNI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  + +AI++FYQ   N   + ALLKEV+P      +   S +  K +VFTGTL+ +
Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRDVLLALLKEVTPFHEVPVEIDYSPLAGKIIVFTGTLEHM 656

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+    +LGA  S  +S+K D ++ G   GSKL KAQQLGV++++E+ +L L+  +
Sbjct: 657 SRDEAKALAERLGAKTSNSISKKVDFLVSGFGAGSKLAKAQQLGVEVLDEKSWLKLIDGH 716


>gi|328542977|ref|YP_004303086.1| DNA ligase, NAD(+)-dependent [polymorphum gilvum SL003B-26A1]
 gi|326412723|gb|ADZ69786.1| DNA ligase, NAD(+)-dependent [Polymorphum gilvum SL003B-26A1]
          Length = 721

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/722 (45%), Positives = 471/722 (65%), Gaps = 7/722 (0%)

Query: 1   MKKRQLIP-IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           M ++     +E+LS ++A  EL+ L  EI+ HD  Y+    P + D+EYDAL+RR  AI 
Sbjct: 1   MNEKSAAAAVESLSRQEAEAELARLAAEIAAHDQRYFAEDAPTVSDAEYDALRRRNAAIE 60

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             FPDL R + P+    +IG   +    KVTH+IP LSL+  ++ +D+R F+ R+ RF +
Sbjct: 61  ERFPDLVREDSPSA---RIGAAPSEGFGKVTHAIPMLSLDNAFSDDDVRDFVARVRRFLR 117

Query: 120 KKDD-NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
                 ++  T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I  IP  L 
Sbjct: 118 LDPLMGALGVTAEPKIDGLSLSLRYEGGRLVSAATRGDGTVGENVTANARTIADIPHRLP 177

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
             +PE++EVRGEVY++  DF ALN  M A G K +ANPRNAA+G LR+LNP     R L 
Sbjct: 178 AGVPEVVEVRGEVYMAHADFAALNARMAANGGKVFANPRNAAAGSLRQLNPDITAARPLK 237

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           FF +  G+ SE+    Q EM+  +   GFPVN  +    +   ++  Y+ ++  R+TL Y
Sbjct: 238 FFAYAWGEMSEVPRATQMEMVSLIGAWGFPVNPRMVLCRSVEELIDVYHAIEEERATLGY 297

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKVD   LQ +LG  +RSPRW I+HKF  ++A T L DI+IQ+GRTG LTPVA+
Sbjct: 298 DIDGVVYKVDRLDLQARLGFVSRSPRWAIAHKFPAEKAFTILRDIEIQVGRTGALTPVAK 357

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV +GG +++NATLHNEDYI+G+   G+ +RGG+D+R+GD V ++RAG+VIP+V+D+ 
Sbjct: 358 LEPVTVGGVVVSNATLHNEDYIRGIGQDGEPIRGGKDLRIGDTVQIQRAGDVIPQVIDVD 417

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R  DA PF+FP+ CP+C S  VR++N KTG+  A  RCTGGL C+AQ  E+LKHFVS
Sbjct: 418 LAKRPADAVPFAFPTVCPVCGSHAVREINAKTGRPDAVRRCTGGLVCAAQAKEKLKHFVS 477

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI-ENILGFGDVSVT 536
           R+AF+IEGLG +Q++FF+        IR PADIFTL+ R   S  +  +N  G+G+ S  
Sbjct: 478 RNAFDIEGLGDKQVEFFYDLPPEEGGIRTPADIFTLEARDAASPIRKLKNRDGWGETSAR 537

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL+ +I+ RR + L RFIF+LGIRHVG   A+ LA+ Y S+  FA  +     H +D W 
Sbjct: 538 NLFAAIDARRRVDLNRFIFALGIRHVGEGNAKLLARAYGSWDAFAAAMRAAADHGSDAWA 597

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            L  +  VG+++A+A+V+F+  P N  A++ALL EV+P          S +  K +VFTG
Sbjct: 598 ELNAIDGVGEVVAEAVVQFFAEPHNREALDALLAEVTPLDAEKVAAEGSPVAGKTVVFTG 657

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L+++ R +A+    +LGA V+  +S+KT +++ G   GSKL+ AQ+L ++++ E+ +  
Sbjct: 658 ALERMTRDEAKAMAERLGAKVAGSVSKKTSLVVAGPGAGSKLKTAQELDIEVITEDDWFD 717

Query: 717 LL 718
           L+
Sbjct: 718 LV 719


>gi|86749131|ref|YP_485627.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2]
 gi|123004307|sp|Q2IYJ4|DNLJ_RHOP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86572159|gb|ABD06716.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2]
          Length = 714

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/725 (42%), Positives = 443/725 (61%), Gaps = 27/725 (3%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           +    I  L+  +A+ E   L  EI  H+  YYQ+  P + D+EYDAL+RR +AI   FP
Sbjct: 6   KPAPDIATLTKAKAKVEAMRLRLEIERHNSAYYQHDAPTVSDAEYDALRRRLEAIEAKFP 65

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +L      + P   +G        KV H++P LSL   +  +++ +F+ R+ RF +    
Sbjct: 66  ELV---SASSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVTEFVERVQRFLRLDAV 122

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IP 182
            SI    EPKIDG  +++RYE G+ + AA RGDG +GEDV+A +R I  IP  L    IP
Sbjct: 123 PSI--VAEPKIDGLSLSLRYEHGELMRAATRGDGFTGEDVTANVRTIADIPTTLKAKTIP 180

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241
              E+RGEVY+ K DFLALN      G   +ANPRN+A+G LR+ +     +R L FF +
Sbjct: 181 AACELRGEVYMLKQDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAY 240

Query: 242 GLGKTSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
             G+ S+       Q++ML  ++  GF VN  +    +    +++Y  +   R+ LPYDI
Sbjct: 241 AWGEMSDYPMDEPTQFKMLGWLKQAGFVVNPEITLCTSVDDALAFYRRIGEQRAALPYDI 300

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG LTPVARL+
Sbjct: 301 DGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLQ 360

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ NATLHNEDYIKGL   G  +R G DIR GD V+V+RAG+VIP++V ++++
Sbjct: 361 PVTVGGVVVQNATLHNEDYIKGLGNDGSPLRDGVDIREGDTVVVQRAGDVIPQIVSVVLD 420

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA P+ FP  CP+C S   R+         A  RCTG L C AQ +ERLKHFVSR 
Sbjct: 421 KRPADATPYHFPHKCPVCGSHAAREEGE------AVWRCTGALICPAQAVERLKHFVSRL 474

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++Q+  F +       ++ PADIFTLQ R   +  K+E+I G+G+ SV NL+
Sbjct: 475 AFDIDGLGEKQIVLFHER----GWVKEPADIFTLQARN--AALKLEDIEGYGETSVRNLF 528

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ------NFAQEINNIIAHNND 593
            +I+ RR I L R IF+LGIRHVG   A+ LA++Y +          A E      + ++
Sbjct: 529 AAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTLDAFLAAMRAAAEGQTEEGNTSE 588

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
            +  L  +  +G+++A A+VEF+  PRN+ A++ALL E+   +   +    + +  K +V
Sbjct: 589 AYQDLDNIAGIGEVVAAAVVEFFAEPRNVAALDALLAELKDVLPAEQARRDTAVAGKTVV 648

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTG+L K  R +A+    +LGA V+  +S+KTD ++ G + GSKL KA+ LGV ++ E++
Sbjct: 649 FTGSLTKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGADAGSKLTKAKDLGVAVLTEDE 708

Query: 714 FLFLL 718
           +L L+
Sbjct: 709 WLALI 713


>gi|91977847|ref|YP_570506.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5]
 gi|123735250|sp|Q133Y4|DNLJ_RHOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91684303|gb|ABE40605.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5]
          Length = 714

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/727 (42%), Positives = 445/727 (61%), Gaps = 28/727 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
            K     I+ L+  +A+ EL  L   I  HD  YYQ   P I D++YDAL+RR +AI   
Sbjct: 5   SKTAAPDIDKLTKPKAKVELMRLRLAIEGHDKAYYQDDAPKIPDADYDALRRRLEAIEAK 64

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L      + P   +G        KV H++P LSL   ++ +++ +F+ R+ RF + +
Sbjct: 65  FPELL---SASSPSQTVGAAPARGFSKVQHAVPMLSLGNAFSDDEVGEFVERVQRFLKLE 121

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
           D  +I    EPKIDG  +++RYE G  V AA RGDG +GEDV+A +R I  IP  L    
Sbjct: 122 DIPAI--VAEPKIDGLSLSLRYENGTLVRAATRGDGFTGEDVTANVRTIADIPTTLKAKT 179

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239
           IP   E+RGEVY+ K+DFLALN      G   +ANPRN+A+G LR+ +     +R L FF
Sbjct: 180 IPAACELRGEVYMLKHDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFF 239

Query: 240 VHGLGKTSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            +  G+ S+   +   Q+ ML  +   GF VN  +   ++    +++Y  +   R+ LPY
Sbjct: 240 AYAWGEMSDYPMESPTQHAMLAWLGDAGFTVNPEITLCHSVDDALAFYRRIGEQRAALPY 299

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKVD    Q +LG  +RSPRW I+HKFA +QA T L  IDIQ+GRTG LTPVAR
Sbjct: 300 DIDGVVYKVDRLDYQARLGFVSRSPRWAIAHKFAAEQAVTVLEKIDIQVGRTGALTPVAR 359

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L+PV +GG ++ NATLHNEDYIKG+ + G  +R G DIR GD V+V+RAG+VIP++V ++
Sbjct: 360 LQPVTVGGVVVQNATLHNEDYIKGVGSDGSPLRDGVDIREGDTVVVQRAGDVIPQIVTVV 419

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           +++R  D   + FP  CP+C S   R+         A  RCTG L C AQ +ERLKHFVS
Sbjct: 420 LDKRPADLPAYKFPHKCPVCGSHAAREEGE------AVWRCTGALICPAQAVERLKHFVS 473

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R AF+I+GLG++Q+  F +       +R PADIFTL+ R   +  K+E++ G+G+ SV N
Sbjct: 474 RLAFDIDGLGEKQIVLFHER----GWVREPADIFTLKARN--AELKLEDLEGYGETSVRN 527

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------N 591
           L+ +I+ RRNI L R IF+LGIRHVG   A+ LA++Y S   F   +             
Sbjct: 528 LFAAIDARRNIELNRLIFALGIRHVGEGNAKLLARHYGSIDVFLAAMRAAAEGQTPEGNT 587

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
           ++ +  L  +  +GD++A+A+VEF+  PRN+ A++ALL+E+   +   +    + +  K 
Sbjct: 588 SEAYQDLDNIAGIGDVVAEAVVEFFAEPRNVGALDALLREIEV-LPVEQAKQDTAVAGKT 646

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +VFTG L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ E
Sbjct: 647 VVFTGALTKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKARDLGVAVLTE 706

Query: 712 EQFLFLL 718
           +++L L+
Sbjct: 707 DEWLALI 713


>gi|298293088|ref|YP_003695027.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506]
 gi|296929599|gb|ADH90408.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506]
          Length = 725

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/735 (40%), Positives = 451/735 (61%), Gaps = 32/735 (4%)

Query: 1   MKKRQL-IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           M  R   I +E L+ ++A KE + L  EI+ HD  YYQ   P + D++YDAL+RR +AI 
Sbjct: 1   MSARTPDIDVEKLTADEAAKEHARLGDEIAGHDRRYYQDDAPSVSDADYDALRRRYEAIE 60

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             FP+L      +    K+G   +    KV H +P LSL   +  E++ +F+ R+ RF  
Sbjct: 61  AQFPELKGI---DSLSEKVGAAPSSKFAKVRHRVPMLSLGNAFADEEVEEFVARVRRFLG 117

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
              D  + FT EPKIDG   ++RYE G+FV AA RGDG  GEDV+  +R I  IP  L  
Sbjct: 118 LSADAEVAFTAEPKIDGLSCSLRYENGQFVQAATRGDGFEGEDVTNNVRTIGEIPERLKG 177

Query: 180 N-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
           N +P I EVRGEVY+   DF A+N+   A G+  +ANPRNAA+G LR+L+P    +R L 
Sbjct: 178 NDVPGIFEVRGEVYMGHADFAAINERQSASGKPLFANPRNAAAGSLRQLDPKITASRPLR 237

Query: 238 FFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           FF +  G+ ++  + +  Q+ +++     G P N       +   ++++Y+ ++  R++L
Sbjct: 238 FFAYAWGEVADGALPSDTQFGVIEAFSRWGLPTNPLTVLCRSAQELLAHYHAIEEQRASL 297

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            YDIDG+VYKVD  +LQ++LG  +RSPRW ++HKF  ++A T+L  I+IQ+GRTG LTPV
Sbjct: 298 GYDIDGVVYKVDSLALQQRLGFVSRSPRWALAHKFPAQRAITQLERIEIQVGRTGALTPV 357

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG-----GRDIRVGDRVLVKRAGEVI 410
           A+L P+ +GG +++NA+LHNEDYIKG+   G  +RG       DIR GD V+++RAG+VI
Sbjct: 358 AKLTPITVGGVVVSNASLHNEDYIKGIGGDGLPIRGTFNDEPVDIREGDWVVIQRAGDVI 417

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+VV + +  R  DA+P+ FP+ CP C S  VR+         A  RCTGGL C AQ +E
Sbjct: 418 PQVVSVELERRPKDAKPYQFPTICPACGSHAVREDGE------AVRRCTGGLICPAQAVE 471

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT--STTKIENIL 528
           R++HFVSRDAF+IEGLG++Q+  FF        ++ PADIFTL+ R     S T+++N  
Sbjct: 472 RIRHFVSRDAFDIEGLGEKQVQAFFD----WGLVKQPADIFTLEARDSAPDSLTRLKNRD 527

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN--- 585
           G+G+ S  NL+ +I  RR + + RF+++LGIRH+G   A+ L ++Y + +   +      
Sbjct: 528 GWGETSAKNLFAAIAARRKVPVNRFLYALGIRHIGETNAKRLMRHYPTIEALREAALAAE 587

Query: 586 ---NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
                    N+ W  +  +  +G ++A+A+V+F+  P N  A++ALLKEV+P        
Sbjct: 588 MPGEAYPKGNEAWAEMNAIEGIGAVVAEAVVDFFHEPNNEAALDALLKEVTPE-PMEAVA 646

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
               +  K +VFTG L+K+ R +A+    +LGA V+  +S+KTD ++ G + GSKL KA+
Sbjct: 647 GGGAVAGKTVVFTGALEKMTRDEAKAMAERLGAKVAGSVSKKTDYVVAGADAGSKLAKAR 706

Query: 703 QLGVKIMNEEQFLFL 717
           +LGV ++ E+++L L
Sbjct: 707 ELGVSVLTEDEWLEL 721


>gi|110679832|ref|YP_682839.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114]
 gi|123172419|sp|Q166E0|DNLJ_ROSDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|109455948|gb|ABG32153.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114]
          Length = 705

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/715 (41%), Positives = 440/715 (61%), Gaps = 15/715 (2%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+++L+ + A+KELS L   +   +  Y+    PII D+++DA KRR  AI   FP L
Sbjct: 3   FAPLDSLTEKAAKKELSKLADLLDQANTAYHANDAPIISDADFDAYKRRNLAIEERFPHL 62

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R+   + P +++G   +    KV HSI  LSL   ++  D+  F+ RI +     D  +
Sbjct: 63  KRA---DSPTDRVGAAPSAGFSKVVHSIAMLSLANAFDEADVSDFVQRIRKHLGLSDIEA 119

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + FT EPKIDG  +++RYE G  V AA RGDG  GE+V+   R IP IP  +S N P+++
Sbjct: 120 LSFTSEPKIDGLSLSLRYENGTLVQAATRGDGAIGENVTENARTIPDIPEQIS-NAPDVL 178

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG 244
           EVRGEVY+S  DF ALN    + G K +ANPRNAA+G LR+L+     +R L FF +  G
Sbjct: 179 EVRGEVYMSHADFEALNARQASAGAKLFANPRNAAAGSLRQLDARITQSRPLRFFAYAWG 238

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             SE   K Q + +++++  GF  N+   + N    +++ Y  ++  R++L YDIDG+VY
Sbjct: 239 TLSEPLGKTQMQSIERLQSFGFQTNDLTEKCNGPEELLAQYRRIEERRASLDYDIDGVVY 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+  LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL+PV +G
Sbjct: 299 KVDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTELQGIDIQVGRTGALSPVARLKPVTVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYI G D  G V+RGG+DIRVGD V V RAG+VIPKV D+ + +R  D
Sbjct: 359 GVVVSNATLHNEDYIAGRDNKGDVIRGGKDIRVGDFVQVYRAGDVIPKVADVDLKKRPAD 418

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A P+ FP+ CP C S  +R+         A  RCTGGL C AQ +ERLKHFVSR AF+I+
Sbjct: 419 AIPYVFPATCPECGSDALREAG------DAVRRCTGGLICPAQAVERLKHFVSRAAFDID 472

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +Q++ F+K       I  PADIFTL+ R  +   +++N  G+G+ S  NL+D+I+ 
Sbjct: 473 GLGAKQIEQFYKD----GWISEPADIFTLRDRFGSGIQQLKNRDGWGEKSANNLFDAIDD 528

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +R I L R IF+LGIRHVG   +  +A++Y ++  F + +      + + W  L+ +  V
Sbjct: 529 KRQIPLARLIFALGIRHVGEAASNLIAQHYSTFDAFEKSMLAAQDKDGEAWDDLLSIDGV 588

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++AQ+++          +++ L+ ++            S +  K +VFTGTL K+ R 
Sbjct: 589 GTVMAQSVIHAMGQAAERASIDRLVAQLDVQPSEAVVTDGSPVAGKTVVFTGTLSKMTRA 648

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+     LGA V+  +S KTD ++ G   GSK +KA +LGV+ ++E+ +L L++
Sbjct: 649 EAKSRAESLGARVAGSVSAKTDFLVAGPGAGSKAKKAAELGVQTLDEDGWLALIE 703


>gi|319408814|emb|CBI82471.1| DNA ligase [Bartonella schoenbuchensis R1]
          Length = 718

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/720 (45%), Positives = 470/720 (65%), Gaps = 16/720 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+  +A  EL  L +EI+ HD  Y    +P I D++YDAL+RR   I   FP+L R+
Sbjct: 6   VKNLTALEAASELEWLAKEIARHDVLYNNNDQPEISDAQYDALRRRNTEIEALFPELIRT 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+    KIG  ++    K  H+   LSL+  ++ ED+ +F+ R+ RF +     ++  
Sbjct: 66  DSPSY---KIGAPVSEKFEKSVHAQAMLSLDNAFSAEDVSEFVERVRRFLRLPSTQTLEM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE+GK V AA RGDG++GE+V+   R I  IP+VL    P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEQGKLVRAATRGDGYTGENVTTNARTISDIPKVLQGEFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVYI + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYIRQEDFQVLNINQQKEGKIAFANPRNAAAGSLRQLDSRITASRKLKFFAYAWGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ AK Q EM+ K++  GF VN   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPAKSQMEMVNKLKEYGFIVNPFTKVFEKVEDLISYYHFIEEQRQSLSYDIDGVVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  +RSPRW I+HKF  ++A+  L  IDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLGLQMRLGFVSRSPRWAIAHKFPAEKATALLEGIDIQVGRTGALTPVARLAPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VDII ++R  DA P
Sbjct: 363 VTNATLHNEDYIKGVGRKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDIISSKRPKDAVP 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S  VR++        A +RCTGGL CSAQ +ER++HFVSR+AF+IEGLG
Sbjct: 423 FVFPHHCPACGSHAVREVGE------AVYRCTGGLICSAQAIERIRHFVSRNAFDIEGLG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K+Q++FFF  +D    IR P DIFTL++RQ+ + T++ENI GFG +SV  L+D+IN RR 
Sbjct: 477 KKQVEFFFNIQDETLCIRSPVDIFTLEKRQKKALTRLENIEGFGSLSVRKLFDAINARRE 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601
           I L RF+F+LGIRHVG   A+ LA+ Y +Y  F   +   I         N++W  LI +
Sbjct: 537 IPLSRFLFALGIRHVGEVNAQRLARVYRNYTAFEAAVMAAIVPHDKTDEGNEEWTDLISI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  + +AI++FYQ   N   + ALL+EV+P          S I  K +VFTGTL  +
Sbjct: 597 EGIGVRVGRAIIDFYQEAHNRDVLSALLQEVTPLPEEAIATDYSPIAGKIIVFTGTLMSM 656

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+    +LGA  S  +S+KTD++I G   GSKL KA++LGV+I++E+ +  L+++Y
Sbjct: 657 SRDEAKALAERLGAKTSGSISKKTDLLIAGLGAGSKLTKAKELGVEIIDEDSWSQLIKEY 716


>gi|260433791|ref|ZP_05787762.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417619|gb|EEX10878.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157]
          Length = 708

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/714 (41%), Positives = 445/714 (62%), Gaps = 13/714 (1%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
            IP++ L+ +QA++EL+ L   +   ++ Y+    P I D+EYDALKRR   I   FP L
Sbjct: 4   PIPVQELTEDQAKEELARLASALLRANELYHGQDAPEISDAEYDALKRRNLEIEARFPHL 63

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R   P+ P  ++G   +    KV HS+  +SL   ++  D+R F+  I ++    +D+ 
Sbjct: 64  KR---PDSPTEQVGARPSEGFDKVRHSVRMMSLGNAFDETDVRDFVRSIQKYLGLSEDDV 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
             FT EPKIDG  +++RYE G  V AA RGDG  GE+V+A    +  IP+ L+   P+I+
Sbjct: 121 PEFTAEPKIDGLSLSLRYENGTLVQAATRGDGEVGENVTANALTVGDIPKALT-GAPKIL 179

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG 244
           EVRGEVY+S  DF  LN +    G K +ANPRNAA+G LR+L+P    +R L FF +  G
Sbjct: 180 EVRGEVYMSHEDFARLNQKQSESGGKLFANPRNAAAGSLRQLDPEVTRSRPLRFFAYAWG 239

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + SE   + Q E L ++  LGF  N   R   +   ++++Y  ++  R+TL YDIDG+VY
Sbjct: 240 ELSEPLGQTQIEGLARLASLGFATNGLTRLCRSVEDMLAHYRTIEEQRATLGYDIDGVVY 299

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +G
Sbjct: 300 KVNDLALQARLGYRSTTPRWAIAHKFPAETAWTRLEAIDIQVGRTGALSPVARLHPVTVG 359

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYI G DA G V+R G+DIRVGD V V RAG+VIPK+ D+ +++R   
Sbjct: 360 GVVVSNATLHNEDYIAGRDAKGNVIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSKRPDW 419

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A PF FP+ CP C S  +R+      +  +  RCTGG+ C AQ +E+LKHFVSR AF+IE
Sbjct: 420 AVPFEFPTKCPECGSDAIRE------EGDSVRRCTGGIICPAQAVEKLKHFVSRKAFDIE 473

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +Q++ F+    P   ++ P DIFTLQ+R + +  K+ N  G+G  SV  L+ +I++
Sbjct: 474 GLGTKQIEMFYDD--PDLPVKTPVDIFTLQQRDEANLNKLANRKGWGRQSVAKLWAAIDE 531

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +R + L R +F+LGIRHVG   +  LA +Y S++ F + +         +W  L+ +  V
Sbjct: 532 KRTVPLARLLFALGIRHVGEAASNLLANHYGSWEAFEKAMTAAADFEGPEWQELLSIDGV 591

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+++A+ +V  +        ++ L+ +++           S +  K +VFTGTL+K+ R 
Sbjct: 592 GEVMARTLVSTFAQEAERKTIDDLVAQLNVLDAERPDTSDSPVAGKTIVFTGTLEKMTRA 651

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+     LGA VS  +S+KTDI++ G   GSK +KA +LGVK+++E+++L L+
Sbjct: 652 EAKARAEALGAKVSGSVSKKTDIVVAGPGAGSKAKKAAELGVKVLDEDEWLHLI 705


>gi|319405996|emb|CBI79627.1| DNA ligase [Bartonella sp. AR 15-3]
          Length = 718

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/720 (45%), Positives = 465/720 (64%), Gaps = 16/720 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  Y++  +P I D+EYDAL+RR + I   FP+L R 
Sbjct: 6   IKNLTALEAEGELEWLAKEIARHDVLYHRDDQPEISDAEYDALRRRNEEIEALFPELVRV 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+    KIG  ++    K  H+ P LSL+  +N +D+ +FI RI RF +  +   I  
Sbjct: 66  DSPSS---KIGAPISEKFEKSIHAQPMLSLDNAFNFKDVSEFIERIRRFLRFPETQIIEM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK V A  RG+G+ GE+V+   R I  IP++L    P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVCAITRGNGYIGENVTTNARTIADIPQILQGKFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGQKDFQLLNISQQKEGKLAFANPRNAAAGSLRQLDSQITASRNLKFFAYAWGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A+ Q EM++K++  GF +N   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPAESQIEMMEKLKEYGFIINPLTKVFEKVEDLISYYHSIEKCRQSLNYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  +RSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLMLQTRLGFVSRSPRWAIAHKFPAEKAIALLEDIDIQVGRTGALTPVARLTPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNA+LHNEDYIKG+   G+++R GRDIRVGD V+++RAG+VIP++VD++V +R      
Sbjct: 363 VTNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPKGTPT 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C S  VR+         A  RCTGGL CSAQ +ER+ HFVSR+AF+IEG G
Sbjct: 423 FIFPRVCPVCGSHAVREEGE------AIRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++FFF  +D    I  PADIFTLQRRQ+ S  ++EN+ GFG VSV  LY++IN RR 
Sbjct: 477 RKQVEFFFHIQDKTLCIHSPADIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARRK 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601
           ISL RF+F+LGIRH+G   A+ LA+ Y +Y  F     + I         N+ W+ L  +
Sbjct: 537 ISLSRFLFALGIRHIGEVNAQRLARAYQNYAAFETAAMSAIMPSGKNIEGNEIWMELTNI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  + +AI++FYQ   N   + ALLKEV+P          S +  K +VFTGTLQ +
Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRNVLLALLKEVTPLHEMPVAIDYSPVVGKTIVFTGTLQHM 656

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+    +LGA  S  +S+KTD+++ G   GSKL KAQQLG+++++E+ +L L+  +
Sbjct: 657 SRDEAKSLAERLGAKTSNSISKKTDLLVAGSGAGSKLIKAQQLGIEVLDEKSWLKLIDGH 716


>gi|156933031|ref|YP_001436947.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ATCC BAA-894]
 gi|166215403|sp|A7MKW4|DNLJ_ENTS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156531285|gb|ABU76111.1| hypothetical protein ESA_00834 [Cronobacter sakazakii ATCC BAA-894]
          Length = 672

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/714 (35%), Positives = 403/714 (56%), Gaps = 49/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R   A+  A P+L     P+ 
Sbjct: 1   MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H +P LSL+ +++      F  R+    +  D  ++ +  E K
Sbjct: 58  PTQRVGAAPLTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRLKSTD--ALVYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GED++  +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLRGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E LQ+ +  G PV++ +R   T   ++++Y+++++ R TL +DIDG+V KVD   
Sbjct: 236 PRSHMERLQQFKAWGLPVSDRIRLVKTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PAQCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  NL +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNLVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +          A  N     L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLE----------ALINASIDDLQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F++   N   +  L +EV       +    + + S    K +V TGTL ++ R  A
Sbjct: 559 HVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVVLTGTLSQMSRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL +
Sbjct: 619 KARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 672


>gi|293395040|ref|ZP_06639327.1| DNA ligase [Serratia odorifera DSM 4582]
 gi|291422447|gb|EFE95689.1| DNA ligase [Serratia odorifera DSM 4582]
          Length = 673

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 397/715 (55%), Gaps = 50/715 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   K+++ L   + +H+  Y+    P I D+EYD L R    +  A P+L  +   + 
Sbjct: 1   MEPNNKKINQLRTSLRHHEYLYHVLDAPEIPDAEYDRLMRELRTLEEAHPELITA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ +    F  R+    +  +   + F  E K
Sbjct: 58  PTQRVGAAPLTAFDQVRHEVPMLSLDNVFDEDSYLAFYKRVQDRLKSSE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLIGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +NDE      K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEKMNDEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  Y+ L + +  G PV++ VR       ++++Y +++  RS L +DIDG+V K+D+  
Sbjct: 236 PRSHYQRLMQFKAWGLPVSDRVRLCTGSDQVLAFYRQVEQDRSQLGFDIDGVVVKIDDID 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW  + KF  ++  T + +++ Q+GRTG +TPVARLEPV + G  ++N
Sbjct: 296 LQERLGFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV ++ + R PDA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVEDRRPPDAREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PQHCPVCGSDVERVEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + E     ++ PA +F L     T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKE----YVKNPAGLFRLTAGMLTGLDRM------GPKSAQNLASALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ S                 D  +L +VP VG+++A+
Sbjct: 509 ARFLYALGIREVGESTAANLAAHFGSLDKLRAA----------DVEALKQVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEA-----LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            +V F+    N   ++      +       +    + + S    K +V TG+L ++ R +
Sbjct: 559 HVVNFFAEALNQQVIDELVSDDIGIHWPAPVVVAVEEIDSPFAGKTVVLTGSLSQLSRDE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL Q
Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEAEMIRLLGQ 673


>gi|73541575|ref|YP_296095.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
 gi|123732913|sp|Q470D2|DNLJ_RALEJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|72118988|gb|AAZ61251.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
          Length = 711

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/730 (35%), Positives = 385/730 (52%), Gaps = 54/730 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P   L    A + +  L  E+  H+  YY    P I D+EYDAL     A+    P+L  
Sbjct: 15  PAGGLPPATAAERVQWLRDELDRHNYQYYVLDAPTIPDAEYDALFTELQALEAEHPELL- 73

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GG    +   V H +P LSL   ++ ED+  F  R  +   +       
Sbjct: 74  --TPDSPTQRVGGAPLSAFDTVRHRVPMLSLNNGFSDEDVTGFDRRCAQGLGRSAAAGGE 131

Query: 124 -------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
                    + +  E K DG  +++RYE G+ V AA RGDG +GEDV+  +R I  IP  
Sbjct: 132 QDLFSAAEGVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLK 191

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235
           L    P ++EVRGEV++ + DF  LN      G K + NPRNAA+G LR+L+P     R 
Sbjct: 192 LRGAAPAVLEVRGEVFMYRRDFDKLNARQAEAGDKTFVNPRNAAAGSLRQLDPRITAKRP 251

Query: 236 LNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           L+FF +GLG+   I        ML     +G PV N         G++ +Y ++   R  
Sbjct: 252 LSFFAYGLGELQGIERPATHSAMLDGFATMGLPVCNERAVVKGAQGLLDFYRKVGEKRDQ 311

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPYDIDG+VYKV+  + Q+QLG  +R+PR+ ++HKF  ++ +T + DI++Q+GRTG +TP
Sbjct: 312 LPYDIDGVVYKVNALAEQEQLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITP 371

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG  +TNATLHNED ++            +D+ +GD V+V+RAG+VIP+VV
Sbjct: 372 VARLQPVFVGGVTVTNATLHNEDEVRR-----------KDVHIGDTVIVRRAGDVIPEVV 420

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            +++  R  DA+ F  P+ CP+C S + R  +       A  RCTGGL C+AQ+ + L H
Sbjct: 421 AVVLERRPDDARAFVMPTACPVCGSHIERLEDE------AIARCTGGLICAAQRKQALLH 474

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F  R A +IEGLG + ++           +R PAD++ L   +  +  ++       D S
Sbjct: 475 FAQRRAMDIEGLGDKVVEQLVDQ----GIVRTPADLYKLGVAKLAALDRMA------DKS 524

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL  +I   R+ +  RFIFSLGIRHVG   A+ LA+++                   D
Sbjct: 525 AGNLVAAIEASRSTTFNRFIFSLGIRHVGEATAKDLARHFGKLDGLMVA----------D 574

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLV 653
             +L+ V  VG ++AQ+IV F+  P N+  +E      V            + +  K  V
Sbjct: 575 EAALLEVNDVGPVVAQSIVNFFGEPHNVEVIEQLRAAGVHWPESEPVARAPAPLAGKTFV 634

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL+KA+ LGV +++E  
Sbjct: 635 LTGTLPSLSREAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAG 694

Query: 714 FLFLLQQYNT 723
            L LL+    
Sbjct: 695 MLALLESVGA 704


>gi|283786048|ref|YP_003365913.1| DNA ligase [Citrobacter rodentium ICC168]
 gi|282949502|emb|CBG89116.1| DNA ligase [Citrobacter rodentium ICC168]
          Length = 671

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/711 (34%), Positives = 396/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     S  ++ H +P LSL+ +++ E    F  R+    +  D   + +  E K
Sbjct: 58  PTQRVGAAPLTSFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSD--KLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITANVRTIRAIPLRLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV+N V   ++   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSNRVTLCDSPEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGYVARAPRWAVAFKFPAQEQMTSVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPAETRPVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PAQCPVCGSDVERVEGE------AVTRCTGGLICAAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ D++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVDALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAFFGTLE----------ALEAASIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +    + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIRQLLAEGVHWPAPVAIKAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|121602535|ref|YP_989218.1| NAD-dependent DNA ligase LigA [Bartonella bacilliformis KC583]
 gi|166215397|sp|A1UTB5|DNLJ_BARBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120614712|gb|ABM45313.1| DNA ligase, NAD-dependent [Bartonella bacilliformis KC583]
          Length = 717

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/723 (44%), Positives = 472/723 (65%), Gaps = 16/723 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
             + L+  +A +EL  L +EI+ HD  Y  + +P I D+ YDAL+RR   I   FP+L R
Sbjct: 4   DAKNLTALEAERELEWLAKEIARHDVLYNNHDQPEISDARYDALRRRNIEIETLFPELVR 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           ++ P+    K+G  ++    K  H+   LSL+  ++ ED+ +F+ R+ RF +     ++ 
Sbjct: 64  ADSPSY---KVGAPISERFEKSVHAQAMLSLDNAFSSEDVHEFVERVRRFLRLPVTKTLE 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            T EPKIDG  +++RYEKGK V AA RGDG+ GE+V+   R +  IP+VL  + P+I+EV
Sbjct: 121 MTAEPKIDGLSLSLRYEKGKLVCAATRGDGYVGENVTVNARTLSDIPQVLQGDFPDILEV 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKT 246
           RGEVY+  +DF  LN +    G+  +ANPRNAA+G LR+L+     R  L FF +G G+ 
Sbjct: 181 RGEVYMRHSDFQDLNVDQQEKGKLVFANPRNAAAGSLRQLDTRMTARRKLKFFAYGWGEV 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE+ AK Q EM++K++  GF +N   +       ++SYY+ ++  R  L YDIDG+VYKV
Sbjct: 241 SEMPAKSQMEMVKKLKEYGFVINPLTKVFKAVEDLISYYHFIEEGRQHLDYDIDGVVYKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++  LQ +LG  +RSPRW I+HKF  ++A   L +IDIQIGRTG LTPVARL P+ +GG 
Sbjct: 301 NDLLLQTRLGNVSRSPRWAIAHKFPAEKAMALLENIDIQIGRTGALTPVARLAPITVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++TNA+LHNEDYIKGL +  + +R GRDIR+GD V+V+RAG+VIP+++D+I+ +R   A 
Sbjct: 361 VVTNASLHNEDYIKGLGSKSESIREGRDIRIGDTVIVQRAGDVIPQIIDVIIEKRPKGAS 420

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF FPS CP C S  VR++        A  RCTGGL C AQ +ER++HFVSR+AF+IEGL
Sbjct: 421 PFVFPSLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVSRNAFDIEGL 474

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++Q++FFF ++D    I  PADIFTLQ+RQ+ S T++EN+ GFG +SV  LYD+IN RR
Sbjct: 475 GEKQVEFFFHAQDETLRIHSPADIFTLQKRQEKSLTRLENMEGFGTLSVRKLYDAINARR 534

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNII-----AHNNDDWLSLIR 600
            I L RF+F+LGIRHVG   AR LA+ Y +Y  F    +  ++        N++WL L  
Sbjct: 535 KIPLSRFLFALGIRHVGEVNARRLARAYQNYNAFETVAMTALMPCNKEDKGNEEWLELTS 594

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G  + +AI++FYQ   N   + +LL+EV+P          S +  K +VFTGTL  
Sbjct: 595 IEGIGVRVGKAIIDFYQETHNRDVLSSLLQEVTPLPEEAAVADYSPVAGKTIVFTGTLVH 654

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R + +    +LGA  S+ +S+KTD+++ G   GSKL KA++LG++IM+EE +L L+ +
Sbjct: 655 MSRDEVKALAERLGAKASSSISKKTDLLVAGIGAGSKLTKAKELGIEIMDEESWLQLINE 714

Query: 721 YNT 723
           ++ 
Sbjct: 715 HHI 717


>gi|163731899|ref|ZP_02139346.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149]
 gi|161395353|gb|EDQ19675.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149]
          Length = 705

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/715 (40%), Positives = 443/715 (61%), Gaps = 15/715 (2%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
            +P+++L+ + A +ELS L + +   +  Y+    P + D+EYDA KRR  A+   FP L
Sbjct: 3   FVPLDSLNEKAAEEELSRLAELLEQANTAYHTKDAPFMSDAEYDAYKRRNLALEDRFPHL 62

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R+   + P + +G   +    KV+HS+  LSL   ++ ED+  F+ RI +     D   
Sbjct: 63  KRA---DSPTDVVGAAPSAGFAKVSHSMAMLSLANAFDDEDVFDFVQRIRKHLGLSDAEP 119

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + FT EPKIDG  +++RYE G  V AA RGDG  GE+V+A    I  IP+ +  N P+++
Sbjct: 120 LHFTSEPKIDGLSLSLRYENGALVQAATRGDGAVGENVTANALTINDIPQRVP-NAPDVL 178

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEVY+S  DF ALN++  A G K +ANPRNAA+G LR+L+      R L FF +  G
Sbjct: 179 EVRGEVYMSHTDFEALNEKQNAAGAKAFANPRNAAAGSLRQLDARITQNRPLRFFAYAWG 238

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             +    K Q + +++++ LGF  N    + +    +++ Y  ++  R++L YDIDG+VY
Sbjct: 239 TLTAPLGKTQSDSIERLKNLGFQTNELTDRCDGPEALLAQYRRIEERRASLDYDIDGVVY 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+  LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL+P+ +G
Sbjct: 299 KVDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTELQSIDIQVGRTGALSPVARLKPITVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYI G D  G V+R G+DIR GD V V RAG+VIPKV D+ +++R  +
Sbjct: 359 GVVVSNATLHNEDYIAGRDNKGGVIRDGKDIRAGDYVQVYRAGDVIPKVADVDLDKRPAE 418

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A PF FP+ CP C S  +R+         A  RCTGGL C AQ +ERLKHFVSR AF+I+
Sbjct: 419 AIPFVFPTTCPECGSDALREAG------DAVRRCTGGLICPAQAVERLKHFVSRAAFDID 472

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +Q++ F+K       +  PADIFTL+ R ++   +++N  G+G+ S TNL+D+I++
Sbjct: 473 GLGAKQIEQFYKD----GWVSEPADIFTLRDRYESGMQQLKNRDGWGEKSATNLFDAIDE 528

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +R I L R +F+LGIRHVG   +  +A++Y ++  F +          D W  L+ +  V
Sbjct: 529 KREIPLARLLFALGIRHVGEAASNLIAQHYSTFDAFEKSTLAAQIEEGDAWDDLLSIDGV 588

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++AQ++V     P    +++ L+ ++     +   +  S +  K +VFTGTL+++ R 
Sbjct: 589 GTVMAQSLVHTMGQPAERASIDRLVAQLKVQPSKPIVSDGSPVAGKTVVFTGTLERMTRA 648

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+     LGA V+  +S KTD ++ G   GSK +KA +LG++ ++E+ +L L++
Sbjct: 649 EAKSRAESLGAKVAGSVSAKTDFLVAGPGAGSKAKKAVELGIRTLDEDGWLALIE 703


>gi|154252874|ref|YP_001413698.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1]
 gi|190359267|sp|A7HVV8|DNLJ_PARL1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154156824|gb|ABS64041.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1]
          Length = 710

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/712 (42%), Positives = 450/712 (63%), Gaps = 21/712 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            ++ L++E+A +EL  L  EI  HD  YYQ   P I D+EYD L+RR +AI   +P+L R
Sbjct: 16  DVDHLTLEEAPEELERLAAEIEKHDKLYYQKDAPRISDAEYDTLRRRNEAIEARYPELVR 75

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               + P +++G +      KV H +P LSL   ++ ED+R F  RI RF   K+++ + 
Sbjct: 76  E---DSPSHRVGAQPADGFGKVVHKVPMLSLSNAFDDEDVRDFALRIRRFLNLKEEDILP 132

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186
            T EPKIDG    +RYEKGKFV  A RGDG  GE+V+  ++ I  IP  L   NIP+++E
Sbjct: 133 ITAEPKIDGLSAALRYEKGKFVMGATRGDGREGENVTENLKTIGDIPAELKGKNIPDVVE 192

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN+     G+  +ANPRNAA+G LR+L+     +R L FF +  G+
Sbjct: 193 VRGEVYMSHEDFAALNERQREAGKPVFANPRNAAAGSLRQLDAKITASRPLRFFAYTWGE 252

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S++ A  Q  ++   R  GF VN    + +T   ++ +Y++++  R+TL YDIDG+VYK
Sbjct: 253 MSDLPADTQSGVMDAFRKWGFTVNPLFGRCDTVEALIDFYHDIEERRATLGYDIDGVVYK 312

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    Q +LG  +RSPRW ++HKF  +QA T L  I+IQ+GRTG LTPVARL PV +GG
Sbjct: 313 VDRLDWQNRLGFVSRSPRWALAHKFPAEQAMTVLEKIEIQVGRTGALTPVARLTPVTVGG 372

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHN D I+ L            +R GD V+V+RAG+VIP++V ++ + R    
Sbjct: 373 VVVSNATLHNADEIERLG-----------VRPGDTVVVQRAGDVIPQIVRVVED-RPRGK 420

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F FP  CP C S  VR++NPKTGKL A  RCTGGL C AQ +ERL+HFVSR+AF+IEG
Sbjct: 421 KKFVFPDTCPECGSHAVREVNPKTGKLDAVARCTGGLVCPAQAVERLRHFVSRNAFDIEG 480

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++Q+  FF+       I+ P DIFTL  R   S  K+++  G+G  S   L+D+I+ R
Sbjct: 481 LGEKQIAAFFED----GLIKKPDDIFTLAARDAKSLKKLKDREGWGATSARKLFDAIDAR 536

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R + L+RFIF LGIRHVG   AR LA+ Y +  +F +++       ++ +  L+ +  VG
Sbjct: 537 REVELDRFIFGLGIRHVGETNARLLARSYGTLDHFEEQMRAAADREDEAYAELLSIDGVG 596

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +++A++IV+F+    N   ++ L +     +   ++  SS +  K +VFTG+L+K+ R +
Sbjct: 597 EVLAESIVDFFAEKHNREVLDGLREAGVKGVPLPKQETSSPVAGKTVVFTGSLEKMTRSE 656

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A+    QLGA V+  +S KTDI++ G + GSKL KA++LG++I++E+Q++ L
Sbjct: 657 AKARAEQLGAKVAGSVSAKTDILVAGADAGSKLAKARELGIEILDEDQWIEL 708


>gi|301155433|emb|CBW14899.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1]
          Length = 667

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/705 (36%), Positives = 410/705 (58%), Gaps = 45/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++ +L Q++  ++  Y+    P I D+EYD L  +  A+  A P+L  +   + P  +
Sbjct: 4   QQQIDTLRQDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELITA---DSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G +      ++ H IP LSL+  ++ E+   F+ RI     +  D  + F  EPK+DG 
Sbjct: 61  VGAKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLPD-PLTFCCEPKLDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            ++I Y  G    AA RGDG +GED++A IR I  IP ++L  N P  +EVRGEV++   
Sbjct: 120 AVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLQLLMDNPPARLEVRGEVFMPHE 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQ 254
            F  LN + +  G K +ANPRNAA+G LR+L+P   + R L    +G+G    +      
Sbjct: 180 GFERLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGIAEGVDLPNTH 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +LQ++
Sbjct: 240 YDRLQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQEK 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +++PRW I++KF  ++  TRL D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 300 LGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L           DI +GD V+++RAG+VIP+++ ++ + R  DA+P  FP  C
Sbjct: 360 NGDEIERL-----------DIAIGDMVVIRRAGDVIPQIIGVLHDRRPADARPIVFPETC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++  
Sbjct: 409 PVCDSAIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     I  PAD+F L     T+ T+   +   G  S  N   S+ K +N +L RF+
Sbjct: 463 VDRE----LIHTPADLFKLD---LTALTR---LERMGTKSAENALASLEKAKNTTLARFV 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A +LA ++ + +          A  N D  +L +VP VG+++A  I+ 
Sbjct: 513 FALGIREVGEATALNLANHFKTLE----------ALQNADLEALQQVPDVGEVVANRILA 562

Query: 615 FYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+  P N+  V  L+ + V       ++ + +  + K +V TGTL ++ R++A+  +  +
Sbjct: 563 FWHEPHNVAVVNDLIAQGVHWETVEAKEVIENRFKGKTVVLTGTLTQMGRNEAKALLQDM 622

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           GA VS  +S KTD +I GD  GSKL KAQ+LGV ++ EE+FL  +
Sbjct: 623 GAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEEEFLAQI 667


>gi|319407493|emb|CBI81141.1| DNA ligase [Bartonella sp. 1-1C]
          Length = 725

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/720 (45%), Positives = 463/720 (64%), Gaps = 16/720 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  Y++  +P I D+EYDAL RR + I   FP+L R+
Sbjct: 6   IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+    KIG  ++    K  H+ P LSL+  +N ED+ +FI RI RF +  +   I  
Sbjct: 66  DSPSS---KIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQIIEM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK V A  RG+G  GE+V+   R I  IP++L  N P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVRAITRGNGSIGENVTTNARTIADIPQILQANFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A+ Q  M++K++  GF +N   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  ARSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNA+LHNEDYIKG+   G+ +R GRDIRVGD V+++RAG+VIP++VD++V +R  D   
Sbjct: 363 VTNASLHNEDYIKGIGHKGEPIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPKDTPA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C S  VR+            RCTGGL CSAQ +ER+ HFVSR+AF+IEG G
Sbjct: 423 FIFPHVCPVCGSHAVREEGET------VRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++FFF ++D    IR P DIFTLQRRQ+ S  ++EN+ GFG VSV  LY++IN RR 
Sbjct: 477 RKQVEFFFHAQDKMLCIRSPVDIFTLQRRQENSLKRLENMEGFGVVSVRKLYNAINARRE 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNNDDWLSLIRV 601
           ISL RF+F+LGIRH+G   A+ LA+ Y +Y  F     + I         N+ W+ L  +
Sbjct: 537 ISLSRFLFALGIRHIGEVKAQRLARAYQNYTAFETAAMSAIMPPDKNNEGNEIWVELTNI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  + +AI++FYQ   N   + ALLKEV+P          S I  K + FTGTL+ +
Sbjct: 597 EGIGFRVGKAIIDFYQEVHNRDILSALLKEVTPLHEAPVTIDYSPIVGKIITFTGTLEHM 656

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+    +LGA  S  +S+KTD+++ G   GSKL KAQQLG+++++E+ +L L+  +
Sbjct: 657 SRDEAKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLTKAQQLGIEVLDEKNWLKLIDGH 716


>gi|22125389|ref|NP_668812.1| NAD-dependent DNA ligase LigA [Yersinia pestis KIM 10]
 gi|45442391|ref|NP_993930.1| NAD-dependent DNA ligase LigA [Yersinia pestis biovar Microtus str.
           91001]
 gi|108808172|ref|YP_652088.1| NAD-dependent DNA ligase LigA [Yersinia pestis Antiqua]
 gi|108811556|ref|YP_647323.1| NAD-dependent DNA ligase LigA [Yersinia pestis Nepal516]
 gi|145599373|ref|YP_001163449.1| NAD-dependent DNA ligase LigA [Yersinia pestis Pestoides F]
 gi|149365146|ref|ZP_01887181.1| DNA ligase [Yersinia pestis CA88-4125]
 gi|162420672|ref|YP_001607138.1| NAD-dependent DNA ligase LigA [Yersinia pestis Angola]
 gi|165926903|ref|ZP_02222735.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165940356|ref|ZP_02228875.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011271|ref|ZP_02232169.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212520|ref|ZP_02238555.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398917|ref|ZP_02304441.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421338|ref|ZP_02313091.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424444|ref|ZP_02316197.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470665|ref|ZP_02335369.1| DNA ligase, NAD-dependent [Yersinia pestis FV-1]
 gi|218930038|ref|YP_002347913.1| NAD-dependent DNA ligase LigA [Yersinia pestis CO92]
 gi|229838581|ref|ZP_04458740.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229895648|ref|ZP_04510819.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
 gi|229899147|ref|ZP_04514290.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901826|ref|ZP_04516947.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
 gi|270490015|ref|ZP_06207089.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
 gi|122980211|sp|Q1CJV7|DNLJ_YERPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123372308|sp|Q1C5X9|DNLJ_YERPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123776939|sp|Q7CJF3|DNLJ_YERPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216255|sp|A4TMG4|DNLJ_YERPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781914|sp|A9QZH0|DNLJ_YERPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21958274|gb|AAM85063.1|AE013752_4 DNA ligase [Yersinia pestis KIM 10]
 gi|45437255|gb|AAS62807.1| DNA ligase [Yersinia pestis biovar Microtus str. 91001]
 gi|108775204|gb|ABG17723.1| DNA ligase [Yersinia pestis Nepal516]
 gi|108780085|gb|ABG14143.1| DNA ligase [Yersinia pestis Antiqua]
 gi|115348649|emb|CAL21593.1| DNA ligase [Yersinia pestis CO92]
 gi|145211069|gb|ABP40476.1| DNA ligase [Yersinia pestis Pestoides F]
 gi|149291559|gb|EDM41633.1| DNA ligase [Yersinia pestis CA88-4125]
 gi|162353487|gb|ABX87435.1| DNA ligase, NAD-dependent [Yersinia pestis Angola]
 gi|165911711|gb|EDR30369.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921254|gb|EDR38478.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989949|gb|EDR42250.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206451|gb|EDR50931.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960827|gb|EDR56848.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051421|gb|EDR62829.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056326|gb|EDR66095.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229680722|gb|EEO76817.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
 gi|229687549|gb|EEO79622.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229694947|gb|EEO84994.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701454|gb|EEO89482.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
 gi|270338519|gb|EFA49296.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
          Length = 670

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD + ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   +  +   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L   N+P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+ +
Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D +  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSQCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L   + T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFQLTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +E L K VS    +    +   S    K +V TG+L  + R +A++
Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEESDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KT ++I G+  GSKL KAQ+LG+K+++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670


>gi|159044058|ref|YP_001532852.1| DNA ligase [Dinoroseobacter shibae DFL 12]
 gi|190359252|sp|A8LK52|DNLJ_DINSH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157911818|gb|ABV93251.1| DNA ligase [Dinoroseobacter shibae DFL 12]
          Length = 741

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/716 (41%), Positives = 433/716 (60%), Gaps = 15/716 (2%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
               + +EALS   ARKEL+ L + ++  +  Y++   P + D++YDALK+R  AI   F
Sbjct: 36  NDTYVAVEALSEAAARKELARLSELLARANAEYHRDDAPSLSDADYDALKQRNAAIEARF 95

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           PDL R    + P +++G   + +  KVTH++  LSL   ++ ED+R F TRI RF    +
Sbjct: 96  PDLKRG---DSPSDQVGAAPSDTFSKVTHAVRMLSLANAFSDEDIRDFDTRIRRFLGLAE 152

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D  + +T EPKIDG  +++RYE G  V AA RGDG  GE+V+A  R I  IP  L    P
Sbjct: 153 DAPLAYTAEPKIDGLSLSLRYEHGTLVQAATRGDGAVGENVTANARTIDDIPHRL-DGAP 211

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVH 241
           E++EVRGEVY+S  DF  LN      G K +ANPRNAA+G LR+L+      R L FF +
Sbjct: 212 EVLEVRGEVYMSHADFAELNARQAETGGKTFANPRNAAAGSLRQLDAEITRARPLKFFAY 271

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+ S   A+ Q E L + R  GF +N    +  T   +++ Y  +++ R+TL YDIDG
Sbjct: 272 AWGEISAPLAETQTETLARFREFGFTINPLTVRCETPEDMLAQYRAIEAQRATLGYDIDG 331

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYK+D+  LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV
Sbjct: 332 VVYKLDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLAPV 391

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG +++NATLHNEDYI+G D +G  +R G DIRVGD V V RAG+VIPK+ D+ ++ R
Sbjct: 392 TVGGVVVSNATLHNEDYIQGRDNTGAPIRWGTDIRVGDWVQVYRAGDVIPKIRDVDLSRR 451

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              A PF FP+ CP C S   R+         A  RC+GGL C AQ +E+LKHFVSR A 
Sbjct: 452 PEGAAPFDFPTTCPECGSDAPREPG------DAVRRCSGGLICPAQAVEKLKHFVSRGAL 505

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+GLG +Q++ F++       I  PADIFTL+ R      +++N  G+GD S  NL+ +
Sbjct: 506 DIDGLGAKQVEQFYRD----GWIAEPADIFTLRARFGQGLQQLKNREGWGDKSAENLFRA 561

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I+  R     + +F LGIRH+G   +  LA +YL+ +     ++  +   +D W  L+ +
Sbjct: 562 IDTARTAPFAKVLFGLGIRHIGESASSLLANHYLTMEALLAAVDAAVDETSDAWADLLNI 621

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG+++A+A+V          +V  LL ++ P+     +   S +  K LVFTGTL+ +
Sbjct: 622 DGVGEVMARALVTTLTQEAERASVNRLLAQIDPAPATPPQVGDSPVAGKTLVFTGTLETM 681

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            R +A+     LGA V+  +S KTD++I G   GSK  KA+ LG+++++E+ +  L
Sbjct: 682 SRAEAKATAEALGAKVAGSVSAKTDLLIAGPGAGSKATKAEALGIEVIDEDAWRVL 737


>gi|268593162|ref|ZP_06127383.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
 gi|291311208|gb|EFE51661.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
          Length = 671

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/709 (34%), Positives = 402/709 (56%), Gaps = 49/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E+  L++++ +H+  Y+    P I D EYD L +R   I    P+L  S   + P  +
Sbjct: 4   KQEIDELKKQLRHHEYQYHVLDAPEIPDVEYDKLMQRLKEIEAQHPELVTS---DSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +   V H IP LSL+ +++ E    F  R+    +  +   + F  E K+DG 
Sbjct: 61  VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRDRLK--NHQELTFCCELKLDGL 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            +++ YE G+ V AA RGDG  GE+++A +R I  IP  L   NIP+ +E+RGEV++ + 
Sbjct: 119 AVSLLYENGELVQAATRGDGTVGENITANVRTIRAIPLRLRGSNIPDRVEIRGEVFMPQK 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQ 254
            F ALN++      K +ANPRNAA+G LR+L+P     R L F+ +G+G           
Sbjct: 179 GFEALNEQARKTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGGSLPDTH 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y+ L + +  G PV++ V+       ++ +Y+E++ +R  L +DIDG+V KV+  ++Q++
Sbjct: 239 YDRLMQFKAWGLPVSDYVQLRVGHQAVLDFYHEIEQVRPDLGFDIDGVVIKVNSIAIQEE 298

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW  + KF  ++  T L D++ Q+GRTG +TPVARLEPV + G +++NATLH
Sbjct: 299 LGFVSRAPRWATAFKFPAQEQVTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLH 358

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            + +GD V+++RAG+VIP++V ++V++R  D++   FP+ C
Sbjct: 359 NADEIERL-----------GVHIGDTVIIRRAGDVIPQIVSVVVDKRPTDSREIVFPTHC 407

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S + R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + +D  
Sbjct: 408 PVCGSDIERVEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     ++ PAD++ L     T   ++      G  S  NL D++NK +  +L RFI
Sbjct: 462 VEKE----YVKTPADLYQLSAGILTGLDRM------GPKSAQNLVDALNKSKQTTLARFI 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA +Y + +          A    D  SL  V  +G ++A+ +V 
Sbjct: 512 YALGIREVGEATAANLAAHYTTLE----------AVMTADEESLKTVQDIGHVVAKHVVN 561

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F++ P N   +E LL + +      +      + S    K +V TG++  + R +A++ +
Sbjct: 562 FFREPHNQAVIEDLLTKANIHWPEVKVVNSAEIDSPFAGKTVVLTGSMSVLTRDEAKDKL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             LGA VS  +S+KTD++I G+  GSKL KA +LG+++++E + + LL 
Sbjct: 622 VALGAKVSGSVSKKTDLVIAGEAAGSKLAKANELGIRVIDENELVRLLN 670


>gi|332162521|ref|YP_004299098.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606605|emb|CBY28103.1| DNA ligase [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666751|gb|ADZ43395.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860741|emb|CBX71032.1| DNA ligase [Yersinia enterocolitica W22703]
          Length = 672

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/714 (34%), Positives = 406/714 (56%), Gaps = 47/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   ++ D   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAD--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           +    F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPLAGFEQLNNEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + R  G PV++ V+       ++++Y +++  R  L +DIDG+V KVD   
Sbjct: 236 PRSHIQRLMQFRAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++++R  DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL   + T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTLTAGKLTGLDRM------GPKSAQNLIVALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ + +N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLENLRAA----------DIEALKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +V F     N   +EAL K ++    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL + +
Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLGESS 672


>gi|209963935|ref|YP_002296850.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW]
 gi|254781401|sp|B6IRF1|DNLJ_RHOCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|209957401|gb|ACI98037.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW]
          Length = 719

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/732 (41%), Positives = 431/732 (58%), Gaps = 40/732 (5%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP+E L+++QA  E ++L +EI++H   YY    P I DS YDAL+ R   +   FP+L 
Sbjct: 10  IPVETLTLDQAAAEHAALVREIAHHRALYYGKDAPEIADSAYDALEHRLAGLEARFPELV 69

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P   +G   +    KV H +P LSL+  +  ED+  F+ +I RF   K+ + +
Sbjct: 70  ---TPDSPTQTVGAAPSAGFGKVRHRVPMLSLDNAFTAEDVDGFVEQIARFLNLKEVDGL 126

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            F  EPKIDG  +++RYE G    AA RGDG  GEDV+A +R I  IP  L    P ++E
Sbjct: 127 EFVAEPKIDGLSLSLRYENGALAQAATRGDGAEGEDVTANVRTIREIPDRLPAGAPSVLE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+ + +F ALN      G K +ANPRNAA+G LR+L+P+    R L FF +  G 
Sbjct: 187 VRGEVYMVREEFFALNRRQAEAGEKVFANPRNAAAGSLRQLDPSVTAKRPLCFFAYSWGD 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE     Q+E LQ+++ LGF V    R   +   ++ YY  + + R+ LP+DIDG+VYK
Sbjct: 247 LSEPLGATQWEALQRLKALGFRVPAQSRLCRSKAELLDYYAGIGAGRAALPFDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+   LQ++LG R R+PRW  +HKF  ++A T L  I IQ+GRTG LTPVA LEPV +GG
Sbjct: 307 VNRLDLQERLGFRTRTPRWATAHKFPAERAQTLLRAITIQVGRTGALTPVAELEPVTVGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++ ATLHN D I             +DIRVGD V+V+RAG+VIP+VV+++   R  D+
Sbjct: 367 VVVSRATLHNADEIAR-----------KDIRVGDTVVVQRAGDVIPQVVEVVTERRPADS 415

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF FP  CP C S  VR+ +       A  RCTGGL C AQ +ERL+HFVSR+AF+IEG
Sbjct: 416 APFVFPDHCPECGSAAVREED------GAVSRCTGGLVCPAQAVERLRHFVSRNAFDIEG 469

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +++  F+  +     IR PADIFTL+RR+     ++  + GFG  SV NL+ +I+ R
Sbjct: 470 LGIERIQLFYDQDR----IRSPADIFTLERREAQRLDRLVAMTGFGRKSVENLFRAIDAR 525

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN------------- 592
           R I L+RFIF+LGIR VG   A+ LA+ Y S   + + +    A  +             
Sbjct: 526 RRIPLDRFIFALGIRQVGEATAKLLARTYRSVGPWTERMAAAAAERSANPDEAKKPELVG 585

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSSEIENK 650
           + +  L  +  +G  +A  I  F+  P N  A++ALLKE+          +   S +  K
Sbjct: 586 EAYAELCAIEQIGMSVADDICAFFAEPHNRDALDALLKELEAVEDHVPPPRADGSPVAGK 645

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +VFTGTL+ + R +A+     LGA V+  +S KTD ++VG + GSK  KA++LG+ I+ 
Sbjct: 646 TVVFTGTLETMGRSEAKARAEALGAKVAGSVSGKTDYVVVGADAGSKAAKARELGLTILT 705

Query: 711 EEQFLFLLQQYN 722
           E+++L L+ Q  
Sbjct: 706 EQEWLDLISQPG 717


>gi|123441550|ref|YP_001005536.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166216254|sp|A1JLA4|DNLJ_YERE8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|122088511|emb|CAL11304.1| DNA ligase [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 672

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/714 (34%), Positives = 405/714 (56%), Gaps = 47/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   ++ D   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAD--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           +    F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPLAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+  V+       ++++Y +++  R  L +DIDG+V KVD   
Sbjct: 236 PRSHIQRLMQFKAWGLPVSERVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++++R  DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL   + T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTLTAGKLTGLDRM------GPKSAQNLIVALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ + +N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLENLRAA----------DIEALKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +V F     N   +EAL K ++    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL + +
Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGESS 672


>gi|261340751|ref|ZP_05968609.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
 gi|288317173|gb|EFC56111.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
          Length = 671

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/713 (34%), Positives = 395/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   ++L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E   +  +V H +P LSL+ +++ E    F  R+    +  D  ++ +  E K
Sbjct: 58  PTQRVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSD--ALTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED++  +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV+N V+  ++   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  D +   F
Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPDDTRAIEF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++   +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLDRM------GPKSAQNVVNALETAKKTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +   +               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEKA----------SIDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNREVIGKLLAEGISWPAPVVVNAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL +
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 671


>gi|296104078|ref|YP_003614224.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058537|gb|ADF63275.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 671

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/714 (34%), Positives = 398/714 (55%), Gaps = 50/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   ++++ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MDSIEQQITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRDLEAQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E   +  +V H +P LSL+ +++ E    F  R+    +  D  ++ +  E K
Sbjct: 58  PTQRVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSD--ALTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED++  +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV+N V+  ++   ++++Y +++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSNRVQLCDSPEAVLAFYRKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  D +   F
Sbjct: 356 ATLHNADEIDRL-----------GLRIGDKVVIRRAGDVIPQVVNVVQSERPDDTRAIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++   +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLDRM------GPKSAQNVVNALEAAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ +     +               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLDALEKA----------SIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F+    N   +    E  +K  +P +   E+ + S    K +V TG+L ++ R  A
Sbjct: 559 HVFNFFAEESNRDVIGKLLEQGIKWPAPVVVNAEE-IDSPFAGKTVVLTGSLSQLSRDDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 618 KARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|332089820|gb|EGI94921.1| DNA ligase, NAD-dependent [Shigella dysenteriae 155-74]
          Length = 671

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 397/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P+    R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPSITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVKGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A     S  I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|51597030|ref|YP_071221.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
           32953]
 gi|186896113|ref|YP_001873225.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis PB1/+]
 gi|81638946|sp|Q668M6|DNLJ_YERPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781913|sp|B2K917|DNLJ_YERPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51590312|emb|CAH21949.1| DNA ligase [Yersinia pseudotuberculosis IP 32953]
 gi|186699139|gb|ACC89768.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis PB1/+]
          Length = 670

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD + ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   +  +   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L   N+P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+  
Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLV 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D +  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSQCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L   + T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFQLTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +E L K VS    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KT ++I G+  GSKL KAQ+LG+K+++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670


>gi|183599716|ref|ZP_02961209.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827]
 gi|188021975|gb|EDU60015.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827]
          Length = 671

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/709 (34%), Positives = 394/709 (55%), Gaps = 49/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ L +L+Q++ +H+  Y+    P I D+EYD L     AI    P+   S   + P  +
Sbjct: 4   KQHLDTLKQQLRHHEYQYHVLDAPEIPDAEYDKLMEELKAIEAEHPEWITS---DSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +   V H IP LSL+ +++ E    F  R+    +  D     F  E K+DG 
Sbjct: 61  VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRDRLK--DQQEQTFCCELKLDGL 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            +++ YE G+ V AA RGDG  GE++++ +R I  IP  L   NIP  +E+RGEV++ + 
Sbjct: 119 AVSLLYENGELVQAATRGDGTVGENITSNVRTIRAIPLRLTGENIPARVEIRGEVFMPQK 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQ 254
            F ALN+E    G K +ANPRNAA+G LR+L+P     R L F+ +G+G    E      
Sbjct: 179 GFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGETLPDTH 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE L + +  G PV+  V+       ++ +Y+E++  R TL +DIDG+V K+++ + Q++
Sbjct: 239 YERLMQFKKWGLPVSEYVQLRTGAQAVLDFYHEIEKARPTLGFDIDGVVIKINDIATQEE 298

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW  + KF  ++  T L D++ Q+GRTG +TPVARLEPV + G  ++NATLH
Sbjct: 299 LGFVSRAPRWATAFKFPAQEQMTLLKDVEFQVGRTGAITPVARLEPVQVAGVTVSNATLH 358

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            + +GD V+++RAG+VIP++V ++ +ER  D++   FP+ C
Sbjct: 359 NADEIERL-----------GVHIGDTVVIRRAGDVIPQIVSVVESERPADSREIVFPTHC 407

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + +D  
Sbjct: 408 PVCGSDVERVEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     ++ PAD++ L     T   ++      G  S  NL +++NK ++ +L RFI
Sbjct: 462 VEKE----YVKNPADLYQLSAGILTGLDRM------GPKSAQNLVEALNKSKSTTLARFI 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA +Y + +               D  SL  V  VG ++A+ +V 
Sbjct: 512 YALGIREVGEATAANLAAHYGTLEALMAA----------DEESLKTVQDVGHVVAKHVVN 561

Query: 615 FYQNPRN----ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F++   N       ++        ++      + S    K +V TG+L ++ R +A++ +
Sbjct: 562 FFREEHNQTVIQALIDKANIHWPEAVAVDVSTIDSPFAGKTVVLTGSLSQLTRDEAKDKL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             LGA VS  +S+KT ++I G+  GSKL KA +LG+ +++E + + LL+
Sbjct: 622 VALGAKVSGSVSKKTHLVIAGEAAGSKLAKANELGIPVIDENELIRLLE 670


>gi|320014458|gb|ADV98029.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 670

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD + ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   +  +   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L   N+P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+ +
Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D +  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSQCPVCSSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L   + T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFQLTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +E L K VS    +    +   S    K +V TG+L  + R +A++
Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEESDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KT ++I G+  GSKL KAQ+LG+K+++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670


>gi|262276434|ref|ZP_06054243.1| DNA ligase [Grimontia hollisae CIP 101886]
 gi|262220242|gb|EEY71558.1| DNA ligase [Grimontia hollisae CIP 101886]
          Length = 670

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/707 (37%), Positives = 410/707 (57%), Gaps = 46/707 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +++L SL+ +++YH   YY   KP + D+EYD + +   AI    P+L  +   + P 
Sbjct: 4   DIQQKLQSLKTQLNYHGHLYYVEDKPELPDAEYDRMMQELLAIEAKHPELVTA---DSPS 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG    +  +V H IP LSL+  ++  +L  F  R+       +     F+ EPK+D
Sbjct: 61  QRVGGAPLGAFEQVRHEIPMLSLDNAFDDGELEAFEKRLRDRLNTTER--FVFSCEPKLD 118

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  +++ YE G  V AA RGDG  GE+++  +R I  +P +L     P  +EVRGEV++ 
Sbjct: 119 GLAVSLMYENGVLVQAATRGDGTVGENITHNVRTIRNVPLLLQGEGWPVRLEVRGEVFMP 178

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K+ F ALN++ I  G K +ANPRNAA+G LR+L+P    TR L F+ + +G  SE F   
Sbjct: 179 KDGFEALNEKNIKKGEKTFANPRNAAAGSLRQLDPKITATRPLRFYAYSVGVMSEAFGDS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
               L++++  G P++  V++ +    + +YY ++ + R+ LPY+IDG+V KVD    Q+
Sbjct: 239 HVGRLEQLKQWGIPLSPEVKKVDGLENVKAYYQDIAARRNDLPYEIDGVVIKVDNIDTQE 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NATL
Sbjct: 299 RLGFVARAPRWAIAYKFPAQEEITVLQDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L            +++GD V+++RAG+VIP++V ++ + R  DA+   FP  
Sbjct: 359 HNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVSVVESRRPDDAKEVVFPHE 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+CQS+V R          A  RCTGGL C AQ+ E +KHF SR A +I+GLG + ++ 
Sbjct: 408 CPVCQSQVERVEGE------AVARCTGGLICRAQRKEAIKHFSSRKALDIDGLGDKIVEQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + E     I+ PAD+F L   Q T   ++      G  S  NL D+++K +  +L RF
Sbjct: 462 LIEKE----LIKTPADLFKLTAGQVTMLDRM------GPKSAQNLVDALSKAKETTLPRF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+SLGIR VG   A +LA ++ +++   +               LI V  VG I+A+ +V
Sbjct: 512 IYSLGIREVGEATAANLANHFFTFEAIREATEE----------QLIEVQDVGVIVAKHVV 561

Query: 614 EFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+    N   ++ALL      P+I + ++N    +  K +V TGTL ++ R+ A+  + 
Sbjct: 562 NFFNEEHNKTVIDALLACGITWPAIEQPDENKPQPLAGKTVVLTGTLSQMSRNDAKAALQ 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            LGA V+  +S KTD++I G+  GSKL KAQQLG++I++E+  + LL
Sbjct: 622 ALGAKVTGSVSAKTDLLIAGEAAGSKLTKAQQLGIEIVDEDGMMRLL 668


>gi|153948204|ref|YP_001400300.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
           31758]
 gi|170023674|ref|YP_001720179.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis YPIII]
 gi|190359300|sp|A7FGC2|DNLJ_YERP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781915|sp|B1JFZ0|DNLJ_YERPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152959699|gb|ABS47160.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758]
 gi|169750208|gb|ACA67726.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis YPIII]
          Length = 670

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD + ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   +  +   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVEHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L   N+P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+  
Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLV 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D +  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSQCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L   + T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFQLTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +E L K VS    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KT ++I G+  GSKL KAQ+LG+K+++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670


>gi|238895883|ref|YP_002920619.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae NTUH-K2044]
 gi|238548201|dbj|BAH64552.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 671

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 397/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R+   +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  D   + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  +
Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +   Q               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQAT----------IEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +    A        +    + + S    K +V TG+L ++ R  A+
Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           E +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 ERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|260598800|ref|YP_003211371.1| NAD-dependent DNA ligase LigA [Cronobacter turicensis z3032]
 gi|260217977|emb|CBA32625.1| DNA ligase [Cronobacter turicensis z3032]
          Length = 672

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/714 (35%), Positives = 401/714 (56%), Gaps = 49/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R   A+  A P+L     P+ 
Sbjct: 1   MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++      F  R+    +  D  ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRLKNTD--ALVYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GED++  +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQTGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ +R   T   ++++Y ++++ R TL +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIRLVKTPEDVLAFYRQVEADRPTLGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQLTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTQCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNLVTALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +          A  N     L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLE----------ALINASIDDLQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F++   N   +  L +EV       +    + + S    K +V TG+L ++ R  A
Sbjct: 559 HVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVVLTGSLSQMSRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL +
Sbjct: 619 KARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 672


>gi|158421773|ref|YP_001523065.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571]
 gi|190359227|sp|A8IGY0|DNLJ_AZOC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158328662|dbj|BAF86147.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571]
          Length = 739

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/732 (42%), Positives = 460/732 (62%), Gaps = 30/732 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS  +A  E ++L QEI+ HD  YYQ   P+I D++YD L+RR + I   FP L   
Sbjct: 15  VSDLSATEASDEHAALSQEIASHDARYYQEDAPVISDADYDRLRRRYEDIEARFPALKND 74

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    K+G   +    KV H +P LSL+  ++ E++ +F+ R+ RF    +   + F
Sbjct: 75  ---DSLSRKVGAAPSAKFAKVVHQVPMLSLQNAFSDEEVEEFVARVRRFLNLAESAELAF 131

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEV 187
           T EPKIDG   ++RYE G  V AA RGDG  GEDV+A +R I  IP  L+   +P+II++
Sbjct: 132 TAEPKIDGLSCSLRYEGGVLVRAATRGDGTQGEDVTANVRTIAEIPHRLTGAGVPDIIDI 191

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246
           RGEVY+ K DFLALN      G+  +ANPRNAA+G LR+L+P    +R L FF +  G+ 
Sbjct: 192 RGEVYMGKADFLALNARQEEAGKPVFANPRNAAAGSLRQLDPEITRSRPLRFFAYAWGQA 251

Query: 247 SEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q+E++   R  G P N    +     G++++Y ++ + R++L YDIDG+VYK
Sbjct: 252 EPGPPGASQHEVVDAFRRFGLPTNPLTIRVTDAAGLLAHYRKIGAERASLGYDIDGVVYK 311

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD  +LQ++LG  +RSPRW I+HKFA +QA+T +  I+IQ+GRTG LTPVA+L PV +GG
Sbjct: 312 VDSLALQERLGFVSRSPRWAIAHKFAAEQATTVIEAIEIQVGRTGALTPVAKLTPVTVGG 371

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI+ +  +G+ +R G DIRVGD V+V+RAG+VIP+VV +++++R   A
Sbjct: 372 VVVSNATLHNEDYIRAIGGNGEEIREGIDIRVGDTVVVQRAGDVIPQVVSVVLDKRPAGA 431

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             + FP  CP+C S+ VR+++PKTGK  A  RCTGGL C AQ +ERL+HFVSR+AF+IEG
Sbjct: 432 TAYQFPHHCPVCNSQAVREVDPKTGKQDAVRRCTGGLICPAQAVERLRHFVSRNAFDIEG 491

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++Q   F++ +     I  PADIF LQ R + S +K+EN  G+G  S  NL+ +I  R
Sbjct: 492 LGEKQAHAFYEWK----LIAEPADIFRLQARNEQSLSKLENREGWGRTSAQNLFAAIEAR 547

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE---------INNIIAHN----- 591
           R I+L+RFIF+LGIRHVG   A+ LA++Y S +              +            
Sbjct: 548 RTIALDRFIFALGIRHVGETNAKRLARHYGSVEALRDAAIGAEMPTEMEEASEETPPTRR 607

Query: 592 -----NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                N+ W  +  +  +G ++A+A+VEF++ P N   VE LLKEV+P         +S 
Sbjct: 608 RKPQGNEVWQEMTDIDGIGAVVAEAVVEFFREPHNRQVVEELLKEVTPQ-PLEAVASTSP 666

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +VFTG+L+++ R +A+    +LGA V+  +S KTD+++ G   GSKLEKA+ LGV
Sbjct: 667 VSGKTVVFTGSLERMTRDEAKAMAERLGAKVAGSVSGKTDLLVAGPGAGSKLEKARSLGV 726

Query: 707 KIMNEEQFLFLL 718
           K + E+++  L+
Sbjct: 727 KTITEDEWFDLV 738


>gi|322831833|ref|YP_004211860.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602]
 gi|321167034|gb|ADW72733.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602]
          Length = 673

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/715 (35%), Positives = 402/715 (56%), Gaps = 50/715 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    +++S L  ++ +H+  Y+    P + D+EYD L R    +  A P+L  +   + 
Sbjct: 1   MATIEEQISQLRTQLRHHEYQYHVLDAPEVPDAEYDRLMRELRELETAHPELVTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R+    +  +  ++ F  E K
Sbjct: 58  PTQRVGAAPLSAFEQVRHRVPMLSLDNVFDEESYLAFYKRVQDRLKTAE--ALTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L   NIPE +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVQAATRGDGTTGENITANVRTIRAIPLRLHGDNIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F A+NDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEAMNDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  +  LQ+ +  G PV++ VR       ++++Y ++++ R +L +DIDG+V K+D   
Sbjct: 236 PRSHFARLQQFKAWGLPVSDRVRLCTGSEEVLAFYRQVEADRPSLGFDIDGVVVKIDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q+ LG  AR+PRW  + KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 IQETLGFVARAPRWATAFKFPAQEQITLVKDVEFQVGRTGAITPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV ++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVLDERPEDAREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCT GL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCHSDVERVEGE------AVARCTAGLICGAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+F L   + T   ++      G  S  N+  ++ K +  +L
Sbjct: 459 IDQLVEKE----YVKTPADLFRLTAGKLTGLDRM------GPKSAQNVVRALEKAKETTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA +Y S +          A    D  SL  V  VGD++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHYGSVE----------ALKAADIESLKGVQDVGDVVAK 558

Query: 611 AIVEFYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            +V F     N   ++      +            + + S    K +V TG+L  + R  
Sbjct: 559 HVVNFLSEEHNQQVIDELLSPEINIHWPEVQVIVPEEIDSPFAGKTVVLTGSLSILSRDD 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMIRLLGE 673


>gi|325576592|ref|ZP_08147310.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
           33392]
 gi|325161155|gb|EGC73270.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
           33392]
          Length = 675

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/705 (36%), Positives = 406/705 (57%), Gaps = 45/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++ +L  ++  ++  Y+    P I D+EYD L  +  A+  A P+L  +   + P  +
Sbjct: 12  QQQIDTLRHDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELITA---DSPTQR 68

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G +      ++ H IP LSL+  ++ E+   F+ RI     +     + F  EPK+DG 
Sbjct: 69  VGAKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLP-EPLTFCCEPKLDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            ++I Y  G    AA RGDG +GED++A IR I  IP ++L  N P  +EVRGEV++   
Sbjct: 128 AVSILYVNGILTQAATRGDGATGEDITANIRTIRNIPLQLLMDNPPARLEVRGEVFMPHA 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQ 254
            F  LN + +  G K +ANPRNAA+G LR+L+P   + R L    +G+G    +      
Sbjct: 188 GFERLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGIAEGVDLPNTH 247

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS L YDIDG V K+++ +LQ++
Sbjct: 248 YDRLQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSALGYDIDGTVLKINDIALQEK 307

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +++PRW I++KF  ++  TRL D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 308 LGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 367

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L           DI +GD V+++RAG+VIP+++ ++ + R  DA+P  FP  C
Sbjct: 368 NGDEIERL-----------DIAIGDTVVIRRAGDVIPQIIGVLHDRRPADARPIVFPKTC 416

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++  
Sbjct: 417 PVCDSAIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQL 470

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     +  PAD+F L     T+ T+   +   G  S  N   S+ K +N +L RFI
Sbjct: 471 VDRE----LVHTPADLFKLD---LTTLTR---LERMGAKSAENALASLEKAKNTTLARFI 520

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A +LA ++ + +          A  N D  +L +VP VG+++A  I+ 
Sbjct: 521 FALGIREVGEATALNLANHFKTLE----------ALQNADLEALQQVPDVGEVVANRILA 570

Query: 615 FYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+  P N+  V  L+ + V       ++   +  + K +V TGTL ++ R++A+  +  +
Sbjct: 571 FWHEPHNVAVVNDLIAQGVRWETVETKEVAENRFKGKTVVLTGTLTQMGRNEAKALLQDM 630

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           GA VS  +S KTD +I GD  GSKL KAQ+LGV ++ EE+FL  +
Sbjct: 631 GAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEEEFLAQI 675


>gi|152971289|ref|YP_001336398.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|166215815|sp|A6TC47|DNLJ_KLEP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150956138|gb|ABR78168.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 671

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/713 (34%), Positives = 396/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R+   +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  D   + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  +
Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +   Q               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +    A        +    + + S    K +V TG+L ++ R  A+
Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|262042032|ref|ZP_06015211.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259040623|gb|EEW41715.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 671

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/713 (34%), Positives = 396/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R+   +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  D   + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  +
Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +   Q               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVAA 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +    A        +    + + S    K +V TG+L ++ R  A+
Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|331653837|ref|ZP_08354838.1| DNA ligase, NAD-dependent [Escherichia coli M718]
 gi|331048686|gb|EGI20762.1| DNA ligase, NAD-dependent [Escherichia coli M718]
          Length = 671

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKSKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVYNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669


>gi|237732406|ref|ZP_04562887.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
 gi|226907945|gb|EEH93863.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
          Length = 671

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L      +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMCELRELEAQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  D   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTD--KLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G     + 
Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGVL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   +++YY++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKEWGLPVSDRVTLCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMV 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCNSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+FTL   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFTLTAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLE----------ALEAASIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L  + R  A+
Sbjct: 559 HVFNFFAEESNREVIVQLLAQGIHWPAPVVINAEEIDSPFAGKTVVLTGSLSLMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +T+LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 669


>gi|238792031|ref|ZP_04635667.1| DNA ligase [Yersinia intermedia ATCC 29909]
 gi|238728662|gb|EEQ20180.1| DNA ligase [Yersinia intermedia ATCC 29909]
          Length = 670

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 401/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++  ++    P+L      + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRSLEAQHPELITH---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ +    F  R++   +  +   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVRHEVPMLSLDNVFDEDSYLAFDKRVHDRLKSAE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L   NIP+ +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPQRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLMFFCYGVGLLDGGDL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+N V+       ++++Y +++  R++L +DIDG+V KVD   
Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVKLCTGSDEVIAFYRQVEQDRTSLGFDIDGVVIKVDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFQAQEQITQVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            IR+GD V+++RAG+VIP+VV +++ +R  D +   F
Sbjct: 356 ATLHNADEIERL-----------GIRIGDTVIIRRAGDVIPQVVGVVMEQRPQDTKEIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PQHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L   + T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFELTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFCNLDNLRAA----------DIDALKSVPDVGEVVAR 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F     N   + AL K +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVRNFLSEEHNQKVIAALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLGE 670


>gi|324009590|gb|EGB78809.1| DNA ligase, NAD-dependent [Escherichia coli MS 57-2]
          Length = 671

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y+E++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|319404500|emb|CBI78105.1| DNA ligase [Bartonella rochalimae ATCC BAA-1498]
          Length = 725

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/720 (45%), Positives = 465/720 (64%), Gaps = 16/720 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  Y++  +P I D+EYDAL RR + I   FP+L R+
Sbjct: 6   IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+    KIG  ++    K  H+ P LSL+  +N ED+ +FI RI RF +  +  +I  
Sbjct: 66  DSPSS---KIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQTIEM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK V A  RG+G  GE+V+   R I  IP +L  N P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVRAITRGNGSIGENVTTNARTIADIPEILQGNFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A+ Q  M++K++  GF +N   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  ARSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ITNA+LHNEDYIKG+   G+++R GRDIRVGD V+++RAG+VIP++VD++V +R  D   
Sbjct: 363 ITNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRSKDTPA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C S  VR+            RCTGGL CSAQ +ER+ HFVSR+AF+IEG G
Sbjct: 423 FIFPHVCPVCGSHAVREEGET------VRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++FFF ++D    IR P DIFTLQRRQ+ S  ++EN+ GFG VSV  LY++IN RR 
Sbjct: 477 RKQVEFFFHAQDKTLCIRSPVDIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARRE 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601
           ISL RF+F+LGIRH+G   A+ LA+ Y +Y  F       I      +  N+ W  L  +
Sbjct: 537 ISLSRFLFALGIRHIGEVKAQRLARAYQNYIAFETAAMTAIMPPDKNSEGNEIWKELTNI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  + +AI++FYQ   N   + ALLKEV+P          S I  K +VFTGTL+ +
Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRDVLSALLKEVTPLHEAPIAIDYSPIVEKIIVFTGTLEHM 656

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+    +LGA  S  +S+KTD+++ G   GSKL KAQQLG+++++E+ +L L+ ++
Sbjct: 657 SRDEAKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLVKAQQLGIEVLDEKNWLKLIDEH 716


>gi|260892973|ref|YP_003239070.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4]
 gi|260865114|gb|ACX52220.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4]
          Length = 672

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/708 (36%), Positives = 383/708 (54%), Gaps = 45/708 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS E+A++ +  L +EI+YHD  YY    P+I D+EYD L     A+  AFP+      P
Sbjct: 5   LSKEEAKRRIEELRREIAYHDYRYYVLDSPVISDAEYDRLVLELMALEEAFPEFI---TP 61

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG        V H +P LSL   +  EDLR F  R+           + + +E
Sbjct: 62  NSPTQRVGGAPREGFPTVRHLVPMLSLANAFEPEDLRDFDRRVREALP---GEKVEYVVE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ Y  G+FV  A RGDG  GEDV+  +R I +IP     + P +IEVRGE 
Sbjct: 119 PKIDGLAVSLLYRDGEFVQGATRGDGEVGEDVTPNLRTIRSIPLRFLKDAPPLIEVRGEA 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  F+ LN+     G  P+ANPRNAA+G +R+L+P     R L+FF +G+G    I 
Sbjct: 179 FMPKEAFVKLNERREEAGEPPFANPRNAAAGSIRQLDPRVTAGRKLDFFAYGIGHYEGIS 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E+L  +   GF VN   R  ++   ++ Y    +S R  LPY IDG+V KV+   
Sbjct: 239 FSTHWEVLDWLAEQGFRVNEHRRLFSSIDEVIDYVLSWQSKRFDLPYVIDGMVVKVNSLE 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG   +SPRW ++ KF  ++A T+L  I+I +GRTG+LTPVA  +PV I G  ++ 
Sbjct: 299 SQARLGATMKSPRWAVAFKFPPEEAVTKLRRIEISVGRTGVLTPVAVFDPVQIAGTTVSR 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED I+            +DIRVGD ++V +AG+VIP+VV  +   R  + Q F  
Sbjct: 359 ATLHNEDLIR-----------EKDIRVGDYIVVHKAGDVIPEVVRSLPERRTGNEQIFRM 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C ++ +R+          A RC   ++C A+  E + HF SR+A +I GLGK  
Sbjct: 408 PDHCPACGAKTIREEGE------VAVRCPN-ISCPARLKESIFHFASRNAMDIRGLGKVL 460

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           ++  ADI+ L+R       ++      G  S  NL   I + ++  L
Sbjct: 461 VEQLVDR----GLVKNVADIYFLRREDLLRLERM------GPKSTANLLREIEESKSRGL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R IF LGIRHVG   A+ LA+++ S    AQ     +            +P +G  IA 
Sbjct: 511 NRLIFGLGIRHVGERAAKLLAEHFGSIDRLAQATEEEL----------TEIPEIGPKIAA 560

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  F+  PRN+  +E L +         E      ++ K  VFTG L+   R +A+  +
Sbjct: 561 SVRAFFAEPRNLEVIERLREAGVRLETTKEVREEGPLKGKVFVFTGALKSFTREEAKALI 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +LG  V++ +SR+TD ++VG+NPGSK ++A++LG+K++NEE+F  LL
Sbjct: 621 ERLGGRVASSVSRRTDYVVVGENPGSKYDRARELGIKMLNEEEFKRLL 668


>gi|227356188|ref|ZP_03840577.1| DNA ligase [Proteus mirabilis ATCC 29906]
 gi|227163652|gb|EEI48568.1| DNA ligase [Proteus mirabilis ATCC 29906]
          Length = 675

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/713 (34%), Positives = 404/713 (56%), Gaps = 49/713 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  ++++  L   + +H+  Y+    P I D+EYD L  +  A+    P+L     P+ P
Sbjct: 3   QNIQQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELI---TPDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G     +  +V H IP LSL+  ++      F  R+    +  ++  I F  E K+
Sbjct: 60  TQRVGALPLTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRERLK--NNEEITFCCELKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ YE G+ V AA RGDG +GE+++  +R I  IP  L   NIP  IE+RGEV++
Sbjct: 118 DGLAVSLLYENGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
           ++  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G        
Sbjct: 178 TEKGFEHLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y  LQ+ +  G PV++ ++       ++ +Y+ +  IR  L +DIDG+V KVD+ +L
Sbjct: 238 TSHYARLQQFKKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIAL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV + G +++NA
Sbjct: 298 QEELGFVSRAPRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            +R+GD V+++RAG+VIP+VV +I  +R  +AQ   FP
Sbjct: 358 TLHNADEIERL-----------GLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CPICQS + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + +
Sbjct: 407 TQCPICQSDIERIEGE------AVARCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKII 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D   + E     ++ PAD+F L  +  +   ++      G+ S   L +++ K ++ +  
Sbjct: 461 DQLVEKE----YVKTPADLFRLDEKILSGLERM------GEKSAKKLLNALEKAKSTTFA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIR VG   A  L  +++S +   +     +            VP VGDI+A+ 
Sbjct: 511 RFIYALGIREVGEATANGLTAHFVSLEALREANIEALKA----------VPDVGDIVAKH 560

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +V F+Q   N   ++ L+ ++  +         +   +    K +V TG+L ++ R +A+
Sbjct: 561 VVNFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAGDNPFAGKTVVLTGSLSQLTRDEAK 620

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +  LGA VS  +S+KTD++I G+  GSKL KA +LG+ +++E++ + LL+Q
Sbjct: 621 DRLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDEMIRLLEQ 673


>gi|320180401|gb|EFW55332.1| DNA ligase [Shigella boydii ATCC 9905]
          Length = 671

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 396/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A     S  I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|84686905|ref|ZP_01014789.1| DNA ligase, NAD-dependent [Maritimibacter alkaliphilus HTCC2654]
 gi|84665102|gb|EAQ11582.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2654]
          Length = 710

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/720 (40%), Positives = 429/720 (59%), Gaps = 13/720 (1%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M       +E L    AR EL+ L   ++  +  Y+    P + D+ YDA KRR   I  
Sbjct: 1   MTGHSETAVEKLDEAGARAELARLADLLASANTAYHTEDAPEMSDAAYDAAKRRNAEIEA 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP+L R    + P +++G        KV H +  LSL   ++ + +  F  ++  F   
Sbjct: 61  RFPELKRD---DSPTDQVGAAPAEGFSKVRHRVRMLSLANAFDDDHVIDFDRQVRAFLGF 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             +  + FT EPKIDG  +++RYE G+ + AA RGDG  GE+V+A  R I  IP+ LS  
Sbjct: 118 SAEEPLAFTAEPKIDGLSLSLRYENGELMQAATRGDGGEGENVTANARTIDDIPQRLS-G 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFF 239
            P+++EVRGEVY+S +DF  LN+   A G K +ANPRNAA+G LR+L+      R L F+
Sbjct: 177 APDVLEVRGEVYMSHDDFARLNESQSAKGGKTFANPRNAAAGSLRQLDSRITEARPLRFY 236

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ S+  A  Q   ++K+  LGF  N   +   T   +  +Y+ ++  R+TL YDI
Sbjct: 237 AYAWGELSDPLADTQMGAIEKLADLGFSTNPLTKIVETPEAMFDHYHAIEEQRATLGYDI 296

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV++ +LQK+LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL 
Sbjct: 297 DGVVYKVNDLALQKRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLS 356

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNEDYI G D+ G  +RGG+DIRVGD V V RAG+VIPKV D+ + 
Sbjct: 357 PVTVGGVVVSNATLHNEDYIAGRDSKGGDIRGGKDIRVGDWVQVYRAGDVIPKVADVDLT 416

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA+P+ FP  CP C S  +R+      +  A  RCTGG+ C AQ +E+LKHFVSR 
Sbjct: 417 KRPDDAEPYVFPDTCPECGSEAIRE------EGDAVRRCTGGMICPAQAVEKLKHFVSRS 470

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLG +Q++ F+  E     IR PADIFT  RR   +  K++N  G+G+ S   L+
Sbjct: 471 AFDIEGLGAKQVEAFYFDE--GLPIREPADIFTFARRDGAALAKLKNRDGWGEKSAAKLF 528

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           ++I +RR I L R IF+LGIRHVG   A  LA++Y  +  F   +          W  L+
Sbjct: 529 EAIEERRRIPLNRVIFALGIRHVGENSANLLARHYGDWPTFEAAMTGASPEGGAAWEELL 588

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  VG+ +A ++V  +       +++ L+ E+        +   S +  K +VFTGTL+
Sbjct: 589 SIDGVGETMATSLVTTFHQEAERASIDRLVAELDIEPVEAPQTEGSPVAGKTVVFTGTLE 648

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           K+ R +A+     LGA VS  +S KTD+++ G   GSK +KA +LG++ ++E+ +L L+ 
Sbjct: 649 KMTRAEAKARAEALGAKVSGSVSAKTDLLVAGPGAGSKAKKAAELGIETIDEDGWLDLIN 708


>gi|146312580|ref|YP_001177654.1| NAD-dependent DNA ligase LigA [Enterobacter sp. 638]
 gi|190359255|sp|A4WD23|DNLJ_ENT38 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145319456|gb|ABP61603.1| DNA ligase, NAD-dependent [Enterobacter sp. 638]
          Length = 671

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/714 (34%), Positives = 398/714 (55%), Gaps = 50/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   ++L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MDSIEQQLTQLRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     S  +V H +P LSL+ +++ E    F  R+    +  D  ++ +  E K
Sbjct: 58  PTQRVGAAPLASFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSAD--TLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGLLVRAATRGDGTTGEDITANVRTIRAIPLTLRGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +NDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G     + 
Sbjct: 176 LPQKGFEKINDEARRTGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGVL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV+N V+  ++   ++++Y++++  R +L +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPSLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  D +   F
Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R             RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PAHCPVCGSDVERVEGE------VVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLSAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +   +   + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEQLEKATIDDLQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F+    N   +    E  +   +P +   E+ + S    K +V TG+L ++ R  A
Sbjct: 559 HVFNFFAEESNRDVIGKLLEEGIHWPAPVVINVEE-IDSPFAGKTVVLTGSLSQMSRDDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +  +GA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L L  +
Sbjct: 618 KARLVAIGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLFGE 671


>gi|157161876|ref|YP_001459194.1| NAD-dependent DNA ligase LigA [Escherichia coli HS]
 gi|253772690|ref|YP_003035521.1| NAD-dependent DNA ligase LigA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162394|ref|YP_003045502.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
 gi|297517308|ref|ZP_06935694.1| NAD-dependent DNA ligase LigA [Escherichia coli OP50]
 gi|300928569|ref|ZP_07144093.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
 gi|190359254|sp|A8A2Q7|DNLJ_ECOHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157067556|gb|ABV06811.1| DNA ligase, NAD-dependent [Escherichia coli HS]
 gi|242378018|emb|CAQ32789.1| DNA ligase [Escherichia coli BL21(DE3)]
 gi|253323734|gb|ACT28336.1| DNA ligase, NAD-dependent [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974295|gb|ACT39966.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
 gi|253978462|gb|ACT44132.1| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)]
 gi|300463441|gb|EFK26934.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
 gi|323961212|gb|EGB56824.1| DNA ligase [Escherichia coli H489]
 gi|323970900|gb|EGB66151.1| DNA ligase [Escherichia coli TA007]
 gi|332344237|gb|AEE57571.1| DNA ligase, NAD-dependent LigA [Escherichia coli UMNK88]
          Length = 671

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|238752012|ref|ZP_04613496.1| DNA ligase [Yersinia rohdei ATCC 43380]
 gi|238709712|gb|EEQ01946.1| DNA ligase [Yersinia rohdei ATCC 43380]
          Length = 670

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/712 (34%), Positives = 408/712 (57%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L+  + +H+  YY    P I D+EYD + ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLKTSLRHHEHQYYVLDAPEIPDAEYDRMMQQLRELEAQHPELITN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +  +V H +P LSL+ +++ E    F  R++   +  +   + F  E K
Sbjct: 58  PTQRVGGAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++  +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV++ V+       ++++Y +++  R+ L +DIDG+V KVD  +
Sbjct: 236 PRSHIQRLMQFKDWGLPVSDRVKLCTGSDQVIAFYRQVEQDRAELGFDIDGVVIKVDSLN 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R PDA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPPDAKEILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PDHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL   + T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTLTAGKLTGLDRM------GPKSAQNLIVALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLANLRAA----------DIDALKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +EAL + ++    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLNEEHNQKVIEALEQVITWPEPQRIITEEIDSPFAGKTVVLTGSLTVLSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+K+++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLIKAQELGIKVIDEAEMILLLGE 670


>gi|332290231|ref|YP_004421083.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
 gi|330433127|gb|AEC18186.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
          Length = 671

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/711 (36%), Positives = 398/711 (55%), Gaps = 45/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ +  L  ++ YH+  Y+    P+I D+EYD +  +   +    P+L      + 
Sbjct: 1   MDDLQQHIEQLRNDLRYHEYQYHVLDNPVIPDAEYDRMMNQLKRLEAEHPELITD---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H +P LSL+  ++ E+   FI RI        D    F  EPK
Sbjct: 58  PTQRVGAKPANGFQQIRHELPMLSLDNAFSDEEFFAFIRRIEDRLGVLPD-PFTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  ++I Y  GK   AA RGDG +GED++A IR I  IP  L     P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGKLTQAATRGDGVTGEDITANIRTIRNIPLQLRTATPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI-F 250
           +  + F  LN+  +  G K +ANPRNAA+G LR+L+P     R L    +G+G    +  
Sbjct: 177 MPHDGFERLNNHALEHGEKTFANPRNAAAGSLRQLDPQVTYHRPLMLNAYGIGIAEGVEL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ LQ ++ +G PVN  +R  N    ++ +Y  +   RS+L YDIDG V KV+   
Sbjct: 237 PNTHYDRLQWLKSIGIPVNKEIRLCNGTTEVLDFYRSIAEKRSSLGYDIDGTVLKVNSIP 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  +R+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQEQLGFISRAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEPVYVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L           DI +GD V+++RAG+VIP+++ ++ + R PDA+P  F
Sbjct: 357 ATLHNGDEIARL-----------DIAIGDTVIIRRAGDVIPQIIGVVHDRRPPDAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S +VR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTRCPVCDSAIVRIDGE------AVARCTGGLVCEAQRKEGLKHFVSRKAMDIDGVGDKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  P D+FTL +       ++      G+ S      SI K +  +L
Sbjct: 460 IEQLVDRE----YLHTPVDLFTLSKETLMGLERM------GEKSAEKALASIEKAKKTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+F+LGIR VG   AR+LA ++ + +N            N  +  L +V  +G+++A 
Sbjct: 510 ARFLFALGIREVGEATARNLANHFHTLENIK----------NATFEQLQQVQDIGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I+ F+Q   N   VE L+++ V+       +   + ++ K +V TGTL ++ R +A+  
Sbjct: 560 RIILFWQEQHNRNVVEKLIEQGVTWDDVNATEIADNPLKEKTVVLTGTLTQMTRDQAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + QLG  V+  +S KTD +I GDN GSKL+KA+ LGVK++ E+QFL L+ Q
Sbjct: 620 LLQLGCKVAGSVSSKTDFVIAGDNAGSKLQKAESLGVKVLTEQQFLDLIPQ 670


>gi|16130337|ref|NP_416906.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109225|ref|AP_003005.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           W3110]
 gi|170019306|ref|YP_001724260.1| NAD-dependent DNA ligase LigA [Escherichia coli ATCC 8739]
 gi|170082020|ref|YP_001731340.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188495579|ref|ZP_03002849.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
 gi|238901574|ref|YP_002927370.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|256021895|ref|ZP_05435760.1| NAD-dependent DNA ligase LigA [Escherichia sp. 4_1_40B]
 gi|300951893|ref|ZP_07165701.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
 gi|300957240|ref|ZP_07169472.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
 gi|301023745|ref|ZP_07187485.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
 gi|312973347|ref|ZP_07787519.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
 gi|2506362|sp|P15042|DNLJ_ECOLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781324|sp|B1XA82|DNLJ_ECODH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781325|sp|B1IX60|DNLJ_ECOLC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149242732|pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna
           Ligase Bound To Nicked Dna-Adenylate
 gi|146613|gb|AAA24070.1| DNA ligase (EC 6.5.1.2) [Escherichia coli]
 gi|1788750|gb|AAC75464.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675396|dbj|BAA16282.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr.
           W3110]
 gi|169754234|gb|ACA76933.1| DNA ligase, NAD-dependent [Escherichia coli ATCC 8739]
 gi|169889855|gb|ACB03562.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188490778|gb|EDU65881.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
 gi|238860822|gb|ACR62820.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|260448502|gb|ACX38924.1| DNA ligase, NAD-dependent [Escherichia coli DH1]
 gi|299880716|gb|EFI88927.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
 gi|300315993|gb|EFJ65777.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
 gi|300448878|gb|EFK12498.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
 gi|309702699|emb|CBJ02028.1| DNA ligase [Escherichia coli ETEC H10407]
 gi|310331942|gb|EFP99177.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
 gi|315137042|dbj|BAJ44201.1| NAD-dependent DNA ligase LigA [Escherichia coli DH1]
 gi|315615662|gb|EFU96294.1| DNA ligase, NAD-dependent [Escherichia coli 3431]
 gi|323936436|gb|EGB32725.1| DNA ligase [Escherichia coli E1520]
 gi|323941344|gb|EGB37529.1| DNA ligase [Escherichia coli E482]
          Length = 671

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 396/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|293410811|ref|ZP_06654387.1| DNA ligase [Escherichia coli B354]
 gi|291471279|gb|EFF13763.1| DNA ligase [Escherichia coli B354]
          Length = 671

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|323967844|gb|EGB63256.1| DNA ligase [Escherichia coli M863]
 gi|327252066|gb|EGE63738.1| DNA ligase, NAD-dependent [Escherichia coli STEC_7v]
          Length = 671

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|331673883|ref|ZP_08374646.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
 gi|331069156|gb|EGI40548.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
          Length = 671

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPTPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|293415682|ref|ZP_06658325.1| DNA ligase [Escherichia coli B185]
 gi|291433330|gb|EFF06309.1| DNA ligase [Escherichia coli B185]
          Length = 671

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|325496534|gb|EGC94393.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ECD227]
          Length = 671

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|332088205|gb|EGI93327.1| DNA ligase, NAD-dependent [Shigella boydii 5216-82]
          Length = 671

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 396/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +S+ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLKRM------GPKSAQNVVNSLEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A     S  I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|218700877|ref|YP_002408506.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI39]
 gi|254781321|sp|B7NPU7|DNLJ_ECO7I RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218370863|emb|CAR18680.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39]
          Length = 671

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V K++  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKINSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|301022290|ref|ZP_07186186.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
 gi|300397609|gb|EFJ81147.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
          Length = 671

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|197285679|ref|YP_002151551.1| NAD-dependent DNA ligase LigA [Proteus mirabilis HI4320]
 gi|254781393|sp|B4EZR2|DNLJ_PROMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194683166|emb|CAR43788.1| DNA ligase [Proteus mirabilis HI4320]
          Length = 675

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/713 (34%), Positives = 403/713 (56%), Gaps = 49/713 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  ++++  L   + +H+  Y+    P I D+EYD L  +  A+    P+L     P+ P
Sbjct: 3   QNIQQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELI---TPDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G     +  +V H IP LSL+  ++      F  R+    +  ++  I F  E K+
Sbjct: 60  TQRVGALPLTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRERLK--NNEEITFCCELKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ YE G+ V AA RGDG +GE+++  +R I  IP  L   NIP  IE+RGEV++
Sbjct: 118 DGLAVSLLYENGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
           ++  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G        
Sbjct: 178 TEKGFEHLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y  LQ+ +  G PV++ ++       ++ +Y+ +  IR  L +DIDG+V KVD+ +L
Sbjct: 238 TSHYARLQQFKKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIAL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV + G +++NA
Sbjct: 298 QEELGFVSRAPRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            +R+GD V+++RAG+VIP+VV +I  +R  +AQ   FP
Sbjct: 358 TLHNADEIERL-----------GLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CPICQS + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + +
Sbjct: 407 TQCPICQSDIERIEGE------AVARCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKII 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D   + E     ++ PAD+F L  +  +   ++      G+ S   L +++ K ++ +  
Sbjct: 461 DQLVEKE----YVKTPADLFRLDEKILSGLERM------GEKSAKKLLNALEKAKSTTFA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIR VG   A  L  +++S +   +     +            VP VGDI+A+ 
Sbjct: 511 RFIYALGIREVGEATANGLTAHFVSLEALREANIEALKA----------VPDVGDIVAKH 560

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +V F+Q   N   ++ L+ ++  +         +   +    K +V TG+L ++ R +A+
Sbjct: 561 VVNFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAGDNPFAGKTVVLTGSLSQLTRDEAK 620

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +  LGA VS  +S+KTD++I G+  GSKL KA +LG+ +++E++ + LL Q
Sbjct: 621 DRLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDEMIRLLDQ 673


>gi|154245706|ref|YP_001416664.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2]
 gi|254782313|sp|A7IG64|DNLJ_XANP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154159791|gb|ABS67007.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2]
          Length = 720

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/722 (41%), Positives = 456/722 (63%), Gaps = 27/722 (3%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           + IP++ LS  +A  E  +L QEI+ HD  YY+   P++ D+EYDAL+ R +AI   FP 
Sbjct: 17  RAIPVDDLSPAEAASEHKALAQEITGHDAAYYREDAPVVSDAEYDALRHRYEAIEERFPG 76

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L      +    K+G   +    KV H +P LSL   ++ E++ +F+ R+ RF     D+
Sbjct: 77  LRGE---DSLSEKVGAAPSEKFGKVAHKVPMLSLANCFSDEEVVEFVARVKRFLNLGPDD 133

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPE 183
            + FT EPKIDG   ++ YE G+   AA RGDG  GEDV+  +R I  IP  L    +P+
Sbjct: 134 EVAFTCEPKIDGLSCSLHYENGRLTVAATRGDGSQGEDVTQNVRTIADIPERLAGKGVPQ 193

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            I+VRGEVY++K DF ALN    A   K +ANPRNAA+G LR+L+ +   +R L FF + 
Sbjct: 194 TIDVRGEVYMAKADFEALNARQAAAEEKVFANPRNAAAGSLRQLDSSITASRPLKFFAYA 253

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ S++ A+ Q+ +++     GF  N  +  A    G++++Y  +++ R+ L YDIDG+
Sbjct: 254 WGEASDLPAETQFGVVEAFARWGFTTNPLMVVAKDAAGLIAHYRSIEAQRALLGYDIDGV 313

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKV+   LQ++LG  +RSPRW I+HKF  +QA+T L DI+IQ+GRTG LTPVA+L PV 
Sbjct: 314 VYKVNSLELQRRLGFVSRSPRWAIAHKFPAEQATTVLEDIEIQVGRTGALTPVAKLTPVT 373

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG ++++ATLHNED I             +D+R+GD V+V+RAG+VIP+VV +I  +R 
Sbjct: 374 VGGVVVSSATLHNEDEIAR-----------KDVRIGDTVVVQRAGDVIPQVVRVIEEKRP 422

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             ++P+ FP+ CP C S  VR+++ K+GK+ A  RCTGGL C AQ +ERL+HFVSR+AF+
Sbjct: 423 AGSKPYEFPTHCPACGSHAVREVDTKSGKVDAVRRCTGGLICPAQMVERLRHFVSRNAFD 482

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG++Q+  F++       I  PADIFTL+ R   S  ++EN  G+G  S  NL+ +I
Sbjct: 483 IEGLGEKQVRAFYE----WGLIASPADIFTLETRNARSLQRLENRDGWGKTSAANLFAAI 538

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------NIIAHNNDDWL 596
            +RR ++++RF+F+LGIRHVG   A+ L ++Y + +                   N+ W 
Sbjct: 539 AERRTVAVDRFVFALGIRHVGETNAKRLMRHYGTVEALEAGALAAVIPGEEHPKGNEAWQ 598

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            +I +  +GD++A+A++EF+  PRN   V ALLKEV+P     +   +S +  K +VFTG
Sbjct: 599 EMIGIDGIGDVVAEAVIEFFGEPRNREVVTALLKEVTPE-PMEQVAAASPVSGKTVVFTG 657

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+K+ R +A+    +LGA V+  +S KT++++ G   GSKLEKAQ LGV+++ E+++  
Sbjct: 658 SLEKMTRDEAKAMAERLGAKVAGSVSAKTNLVVAGPGAGSKLEKAQALGVQVITEDEWFE 717

Query: 717 LL 718
           L+
Sbjct: 718 LV 719


>gi|218548148|ref|YP_002381939.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ATCC 35469]
 gi|331684067|ref|ZP_08384663.1| DNA ligase, NAD-dependent [Escherichia coli H299]
 gi|254781331|sp|B7LL73|DNLJ_ESCF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218355689|emb|CAQ88301.1| DNA ligase, NAD(+)-dependent [Escherichia fergusonii ATCC 35469]
 gi|315298233|gb|EFU57493.1| DNA ligase, NAD-dependent [Escherichia coli MS 16-3]
 gi|331079019|gb|EGI50221.1| DNA ligase, NAD-dependent [Escherichia coli H299]
          Length = 671

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|300940348|ref|ZP_07154941.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
 gi|300454839|gb|EFK18332.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
          Length = 671

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISALLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|301648064|ref|ZP_07247828.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
 gi|307139053|ref|ZP_07498409.1| NAD-dependent DNA ligase LigA [Escherichia coli H736]
 gi|331643032|ref|ZP_08344167.1| DNA ligase, NAD-dependent [Escherichia coli H736]
 gi|301073835|gb|EFK88641.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
 gi|331039830|gb|EGI12050.1| DNA ligase, NAD-dependent [Escherichia coli H736]
          Length = 671

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 396/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K ++NPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFSNPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|330013648|ref|ZP_08307732.1| DNA ligase [Klebsiella sp. MS 92-3]
 gi|328533421|gb|EGF60158.1| DNA ligase [Klebsiella sp. MS 92-3]
          Length = 671

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/713 (34%), Positives = 395/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R+   +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  D   + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD   
Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGELTGLDRM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +   Q               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +    A        +    + + S    K +V TG+L ++ R  A+
Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|238790828|ref|ZP_04634584.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
 gi|238721075|gb|EEQ12759.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
          Length = 670

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/712 (34%), Positives = 406/712 (57%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   +  +   + F  E K
Sbjct: 58  PTQRVGAAPLDAFDQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++  +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+N V+       ++++Y +++  R++L +DIDG+V KVD   
Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVKLCTGSDQVIAFYRQVEQDRASLGFDIDGVVIKVDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++++R  DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PDHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL   + T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTLTAGKLTGLDRM------GPKSAQNLIVALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIEALKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +E L K +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLSEEHNQKVIETLEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670


>gi|218690549|ref|YP_002398761.1| NAD-dependent DNA ligase LigA [Escherichia coli ED1a]
 gi|254781322|sp|B7MY64|DNLJ_ECO81 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218428113|emb|CAR09030.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a]
          Length = 671

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y+E++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GLKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|238756322|ref|ZP_04617636.1| DNA ligase [Yersinia ruckeri ATCC 29473]
 gi|238705475|gb|EEP97878.1| DNA ligase [Yersinia ruckeri ATCC 29473]
          Length = 674

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/715 (34%), Positives = 402/715 (56%), Gaps = 47/715 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L      +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRASLRHHEHQYHVLDAPEIPDAEYDRLMGELRELEAQHPELITA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +   V H +P LSL+ +++ E    F  R++   +  +   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEPVRHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG +GE+++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELIRAATRGDGTTGENITANVRTIHAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LND+    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNDDARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E LQ+ +  G PV+  V++      ++++Y++++  R+ L +DIDG+V KVD   
Sbjct: 236 PSSHFERLQQFKAWGLPVSERVQRCTGVDQVIAFYHQVEQDRAHLGFDIDGVVIKVDALD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQMTQVREVEFQVGRTGAITPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP++V ++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVMVRRAGDVIPQIVGVVIDERPADAREIIF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RC+GGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PEHCPVCGSDIERIEGE------AVARCSGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + E     +  PAD+F L     T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKE----YVHNPADLFNLSAGILTGLDRM------GPKSAQNLVAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAAHLAAHFRTLENLRAA----------DVEALKAVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   ++ L + +S    +      + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLSEEHNQQVIQQLEQVISWPEPQLIIATEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +  +
Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIQVIDEAEMIRLLGESES 673


>gi|281179485|dbj|BAI55815.1| DNA ligase [Escherichia coli SE15]
          Length = 671

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|146615|gb|AAA24071.1| lig peptide [Escherichia coli]
          Length = 671

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLARFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|157156100|ref|YP_001463741.1| NAD-dependent DNA ligase LigA [Escherichia coli E24377A]
 gi|193066723|ref|ZP_03047750.1| DNA ligase, NAD-dependent [Escherichia coli E22]
 gi|194430461|ref|ZP_03062941.1| DNA ligase, NAD-dependent [Escherichia coli B171]
 gi|209919893|ref|YP_002293977.1| NAD-dependent DNA ligase LigA [Escherichia coli SE11]
 gi|218554944|ref|YP_002387857.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI1]
 gi|218696047|ref|YP_002403714.1| NAD-dependent DNA ligase LigA [Escherichia coli 55989]
 gi|256017438|ref|ZP_05431303.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
 gi|260845052|ref|YP_003222830.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
 gi|260856513|ref|YP_003230404.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|260869108|ref|YP_003235510.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
 gi|293446772|ref|ZP_06663194.1| DNA ligase [Escherichia coli B088]
 gi|300817349|ref|ZP_07097566.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
 gi|300820921|ref|ZP_07101071.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
 gi|300903139|ref|ZP_07121073.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
 gi|300921341|ref|ZP_07137704.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
 gi|301306250|ref|ZP_07212323.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
 gi|301328910|ref|ZP_07221944.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
 gi|307312589|ref|ZP_07592222.1| DNA ligase, NAD-dependent [Escherichia coli W]
 gi|309794543|ref|ZP_07688966.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
 gi|331669152|ref|ZP_08370000.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
 gi|331678399|ref|ZP_08379074.1| DNA ligase, NAD-dependent [Escherichia coli H591]
 gi|332278439|ref|ZP_08390852.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
 gi|190359253|sp|A7ZPL2|DNLJ_ECO24 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781319|sp|B7LCF6|DNLJ_ECO55 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781323|sp|B7M6S1|DNLJ_ECO8A RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781327|sp|B6I4Y8|DNLJ_ECOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157078130|gb|ABV17838.1| DNA ligase, NAD-dependent [Escherichia coli E24377A]
 gi|192925627|gb|EDV80294.1| DNA ligase, NAD-dependent [Escherichia coli E22]
 gi|194411494|gb|EDX27836.1| DNA ligase, NAD-dependent [Escherichia coli B171]
 gi|209913152|dbj|BAG78226.1| DNA ligase [Escherichia coli SE11]
 gi|218352779|emb|CAU98567.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989]
 gi|218361712|emb|CAQ99309.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1]
 gi|257755162|dbj|BAI26664.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|257760199|dbj|BAI31696.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
 gi|257765464|dbj|BAI36959.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
 gi|291323602|gb|EFE63030.1| DNA ligase [Escherichia coli B088]
 gi|300404835|gb|EFJ88373.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
 gi|300411729|gb|EFJ95039.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
 gi|300526674|gb|EFK47743.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
 gi|300529975|gb|EFK51037.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
 gi|300838493|gb|EFK66253.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
 gi|300844712|gb|EFK72472.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
 gi|306907512|gb|EFN38016.1| DNA ligase, NAD-dependent [Escherichia coli W]
 gi|308121999|gb|EFO59261.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
 gi|315061736|gb|ADT76063.1| DNA ligase, NAD(+)-dependent [Escherichia coli W]
 gi|315256427|gb|EFU36395.1| DNA ligase, NAD-dependent [Escherichia coli MS 85-1]
 gi|320199974|gb|EFW74563.1| DNA ligase [Escherichia coli EC4100B]
 gi|323156318|gb|EFZ42476.1| DNA ligase, NAD-dependent [Escherichia coli EPECa14]
 gi|323159458|gb|EFZ45441.1| DNA ligase, NAD-dependent [Escherichia coli E128010]
 gi|323177463|gb|EFZ63051.1| DNA ligase, NAD-dependent [Escherichia coli 1180]
 gi|323184284|gb|EFZ69660.1| DNA ligase, NAD-dependent [Escherichia coli 1357]
 gi|323377683|gb|ADX49951.1| DNA ligase, NAD-dependent [Escherichia coli KO11]
 gi|323944634|gb|EGB40701.1| DNA ligase [Escherichia coli H120]
 gi|324020175|gb|EGB89394.1| DNA ligase, NAD-dependent [Escherichia coli MS 117-3]
 gi|324118125|gb|EGC12023.1| DNA ligase [Escherichia coli E1167]
 gi|331064346|gb|EGI36257.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
 gi|331074859|gb|EGI46179.1| DNA ligase, NAD-dependent [Escherichia coli H591]
 gi|332100791|gb|EGJ04137.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
          Length = 671

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|300717845|ref|YP_003742648.1| DNA ligase [Erwinia billingiae Eb661]
 gi|299063681|emb|CAX60801.1| DNA ligase [Erwinia billingiae Eb661]
          Length = 672

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/714 (36%), Positives = 404/714 (56%), Gaps = 49/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + ++++L+  + +H+  Y+    P + D+EYD L R    +  A P+L  +   + 
Sbjct: 1   MESVQDKITALQTTLRHHEYQYHVMDDPEVPDAEYDRLMRELRELEQAHPELVTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+  ++ E    F  R+    +  DD  I F  E K
Sbjct: 58  PTQRVGAAPLGAFEQVRHEVPMLSLDNAFDEESYLAFYKRVQDRLKNTDD--ITFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPSRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           +    F ALN+E    G K +ANPRNAA+G LR+L+P     R L FF +G G       
Sbjct: 176 MPLAGFEALNNEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ ++  +T   ++++Y +++  R TL +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIKLCHTAEEVLAFYRQVEQDRPTLGFDIDGVVIKVDSQD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GDRV+++RAG+VIP+VV +I +ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVIIRRAGDVIPQVVGVIESERPDDAREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R      G++VA  RCTGGL C AQ+   LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +S+ K +  +L
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNSLEKAKTTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGI  VG   A +LA ++ S +               D  +LI V  VG ++A 
Sbjct: 509 ARFLYSLGISEVGEATAANLAAHFGSLEKIMAA----------DLDALIAVQDVGTVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N   +  L++E   +    E      + S    K +V TG+L  + R +A
Sbjct: 559 HLRNFMDEESNREVIRQLVEEAGINWPAVEVVNAAEIDSPFAGKTVVLTGSLTILSRDEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 KDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMIRLLGE 672


>gi|320196260|gb|EFW70884.1| DNA ligase [Escherichia coli WV_060327]
          Length = 671

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAVKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|300923365|ref|ZP_07139409.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
 gi|300420362|gb|EFK03673.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
          Length = 671

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKGFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|26248787|ref|NP_754827.1| NAD-dependent DNA ligase LigA [Escherichia coli CFT073]
 gi|170680446|ref|YP_001744602.1| NAD-dependent DNA ligase LigA [Escherichia coli SMS-3-5]
 gi|227887457|ref|ZP_04005262.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
 gi|300981618|ref|ZP_07175608.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
 gi|301046300|ref|ZP_07193464.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
 gi|81475373|sp|Q8FFC1|DNLJ_ECOL6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781328|sp|B1LMK5|DNLJ_ECOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|26109193|gb|AAN81395.1|AE016764_77 DNA ligase [Escherichia coli CFT073]
 gi|170518164|gb|ACB16342.1| DNA ligase, NAD-dependent [Escherichia coli SMS-3-5]
 gi|227835807|gb|EEJ46273.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
 gi|300301715|gb|EFJ58100.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
 gi|300408962|gb|EFJ92500.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
 gi|307554453|gb|ADN47228.1| DNA ligase [Escherichia coli ABU 83972]
 gi|315293473|gb|EFU52825.1| DNA ligase, NAD-dependent [Escherichia coli MS 153-1]
 gi|323977408|gb|EGB72494.1| DNA ligase [Escherichia coli TW10509]
          Length = 671

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|320185101|gb|EFW59881.1| DNA ligase [Shigella flexneri CDC 796-83]
          Length = 671

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 396/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++IVG+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIVGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|209764254|gb|ACI80439.1| DNA ligase [Escherichia coli]
          Length = 671

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P++CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IEQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|323170330|gb|EFZ55983.1| DNA ligase, NAD-dependent [Escherichia coli LT-68]
          Length = 671

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +S+ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNSLEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|15832537|ref|NP_311310.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. Sakai]
 gi|168768500|ref|ZP_02793507.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
 gi|168778374|ref|ZP_02803381.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
 gi|208813694|ref|ZP_03255023.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
 gi|208821178|ref|ZP_03261498.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
 gi|209399429|ref|YP_002271890.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115]
 gi|217326968|ref|ZP_03443051.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
 gi|254794365|ref|YP_003079202.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223146|ref|ZP_05937427.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259301|ref|ZP_05951834.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283640|ref|YP_003500458.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
 gi|166215595|sp|Q8XBL5|DNLJ_ECO57 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781320|sp|B5YZV8|DNLJ_ECO5E RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13362753|dbj|BAB36706.1| DNA ligase [Escherichia coli O157:H7 str. Sakai]
 gi|189003243|gb|EDU72229.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
 gi|189362250|gb|EDU80669.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
 gi|208734971|gb|EDZ83658.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
 gi|208741301|gb|EDZ88983.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
 gi|209160829|gb|ACI38262.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115]
 gi|209764248|gb|ACI80436.1| DNA ligase [Escherichia coli]
 gi|209764250|gb|ACI80437.1| DNA ligase [Escherichia coli]
 gi|209764252|gb|ACI80438.1| DNA ligase [Escherichia coli]
 gi|209764256|gb|ACI80440.1| DNA ligase [Escherichia coli]
 gi|217319335|gb|EEC27760.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
 gi|254593765|gb|ACT73126.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763513|gb|ADD57474.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
 gi|320188751|gb|EFW63410.1| DNA ligase [Escherichia coli O157:H7 str. EC1212]
 gi|320640925|gb|EFX10409.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. G5101]
 gi|320646206|gb|EFX15133.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str.
           493-89]
 gi|320651712|gb|EFX20092.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. H
           2687]
 gi|320657097|gb|EFX24906.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320662857|gb|EFX30185.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667743|gb|EFX34654.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326340214|gb|EGD64018.1| DNA ligase [Escherichia coli O157:H7 str. 1125]
 gi|326344216|gb|EGD67977.1| DNA ligase [Escherichia coli O157:H7 str. 1044]
          Length = 671

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P++CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|215487666|ref|YP_002330097.1| NAD-dependent DNA ligase LigA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967700|ref|ZP_07781915.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
 gi|254781317|sp|B7UGB2|DNLJ_ECO27 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|215265738|emb|CAS10145.1| DNA ligase, NAD(+)-dependent [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312287897|gb|EFR15802.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
          Length = 671

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L  L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y+E++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAVKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|324112923|gb|EGC06899.1| DNA ligase [Escherichia fergusonii B253]
          Length = 671

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HAHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|311278661|ref|YP_003940892.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1]
 gi|308747856|gb|ADO47608.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1]
          Length = 671

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 399/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L++L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MEPIEQQLTALRATLRHHEYLYHVMDAPELPDAEYDRLMRELRELEAKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E   +  +V H IP LSL+ +++ E    F  R+    +  D   + +  E K
Sbjct: 58  PTQRVGAEPLGAFSQVRHEIPMLSLDNVFDEESFLAFNKRVQDRLKSSD--KLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED++A +R I  IP  L   ++P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGLLVRAATRGDGTTGEDITANVRTIRAIPLKLRGDDVPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +NDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L++ +  G PV++ V   N+   +++YY +++  R TL +DIDG+V KVD   
Sbjct: 236 PASHLGRLRQFKSWGLPVSSRVTLCNSPEEVLAYYRKVEEDRPTLGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A ++EG+G + 
Sbjct: 405 PAHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVEGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  S 
Sbjct: 459 IDQLVEKE----YVLTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKETSF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA +Y S +        +IA + DD  +   VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHYGSLE-------ALIAASIDDLQT---VPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   ++   A        +    + + S    K +V TG+L  + R  A+
Sbjct: 559 HVFNFFAEESNREVIQQLLAEGIHWPAPVVVKAEEIDSPFAGKTVVLTGSLSLMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L LL +
Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMLRLLGE 671


>gi|323188282|gb|EFZ73575.1| DNA ligase, NAD-dependent [Escherichia coli RN587/1]
          Length = 671

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L  L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|332092973|gb|EGI98039.1| DNA ligase, NAD-dependent [Shigella boydii 3594-74]
          Length = 671

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|300021787|ref|YP_003754398.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523608|gb|ADJ22077.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888]
          Length = 712

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/708 (40%), Positives = 442/708 (62%), Gaps = 23/708 (3%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              E++ L  EI  HD+ YY+   P I D++YDAL+RR   +  A P+L R+     P  
Sbjct: 23  VEDEIARLSAEIERHDELYYRNDAPEISDADYDALRRRLTQLEDAHPELKRA---GSPSE 79

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+G     +  K+ H +P LSL   ++ +D+  F+ R+ RF    + + +  T EPKIDG
Sbjct: 80  KVGSAPVAAFGKIAHDVPMLSLGNAFDDQDVVDFVQRVRRFLNLGESDELEITAEPKIDG 139

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             I+IRYE G+ V AA RGDG  GE+V+A ++ I  IP +L   ++P++I++RGE+Y+  
Sbjct: 140 LSISIRYEGGRLVQAATRGDGAEGENVTANVKTIKDIPHLLVGKDVPDVIDIRGEIYLGH 199

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN    A G K +ANPRNAA+G LR+L+ +    R L FF +  G  S++ +  Q
Sbjct: 200 KDFEKLNAAQAASGGKVFANPRNAAAGSLRQLDSSITAQRPLQFFAYAWGAASKLPSDTQ 259

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             ++   +  G PVN  +    +   ++ YY  ++S R+ L YDIDG+VYKV+    Q++
Sbjct: 260 RGVVAAFKSWGLPVNPLMEITRSPDELLDYYRGIESKRAKLDYDIDGVVYKVNRLDYQER 319

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I+HKFA ++A+T L  IDIQ+GRTG LTPVA+LEPV +GG +++NATLH
Sbjct: 320 LGFVSRSPRWAIAHKFAAERATTVLNKIDIQVGRTGALTPVAKLEPVTVGGVVVSNATLH 379

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I             +DIR GD V+V+RAG+VIP++V++++++R   A P+ FP+ C
Sbjct: 380 NEDEISR-----------KDIREGDTVVVQRAGDVIPQIVEVVLDKRPQHAAPYKFPAVC 428

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC S  VR+ + +        RCTGGL C AQ  ERLKHFVSR+AF+IEGLG ++++FF
Sbjct: 429 PICGSHAVRESDEEGNAADVVRRCTGGLVCGAQLKERLKHFVSRNAFDIEGLGGEKIEFF 488

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F++      I+  ADIFTL++R Q S   +  + GF + SV  L+ +IN RR + L+RF+
Sbjct: 489 FETGR----IKSAADIFTLEKRDQKSDEPLTKVRGFKETSVNKLFAAINARRTVPLDRFL 544

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH--NNDDWLSLIRVPLVGDIIAQAI 612
           F+LGIRH+G   A+ LAK Y +++     ++  I     ++ +  +  +  +G+ +  A+
Sbjct: 545 FALGIRHIGETTAKDLAKAYGTFEALRAAVDAAIQGGKGSEAYQDIDNIEGIGETVVDAL 604

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++F+    N   ++ALLKEV+ +  +    VSS +  K +VFTGTL K+ R++A+    +
Sbjct: 605 IDFFSEQHNQEQLDALLKEVNVTAFKR-VQVSSPVTGKTVVFTGTLTKLTRNEAKAQAER 663

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           LGA VS  +S+KTD ++ G   GSKL+ A+ LGV +++E+ +L L+ +
Sbjct: 664 LGAKVSGSVSKKTDYVVAGAEAGSKLDNARALGVIVLDEDGWLELIGK 711


>gi|74312947|ref|YP_311366.1| NAD-dependent DNA ligase LigA [Shigella sonnei Ss046]
 gi|123732314|sp|Q3YZD1|DNLJ_SHISS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|73856424|gb|AAZ89131.1| DNA ligase [Shigella sonnei Ss046]
 gi|323169148|gb|EFZ54825.1| DNA ligase, NAD-dependent [Shigella sonnei 53G]
          Length = 671

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEVLEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|331648073|ref|ZP_08349163.1| DNA ligase, NAD-dependent [Escherichia coli M605]
 gi|331042933|gb|EGI15073.1| DNA ligase, NAD-dependent [Escherichia coli M605]
          Length = 671

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIIINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|91211748|ref|YP_541734.1| NAD-dependent DNA ligase LigA [Escherichia coli UTI89]
 gi|117624619|ref|YP_853532.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
 gi|218559359|ref|YP_002392272.1| NAD-dependent DNA ligase LigA [Escherichia coli S88]
 gi|237704934|ref|ZP_04535415.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
 gi|331658566|ref|ZP_08359510.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
 gi|123084405|sp|Q1R8W1|DNLJ_ECOUT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215402|sp|A1ADS8|DNLJ_ECOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781318|sp|B7MHR5|DNLJ_ECO45 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91073322|gb|ABE08203.1| DNA ligase [Escherichia coli UTI89]
 gi|115513743|gb|ABJ01818.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
 gi|218366128|emb|CAR03873.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88]
 gi|226901300|gb|EEH87559.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
 gi|294491726|gb|ADE90482.1| DNA ligase, NAD-dependent [Escherichia coli IHE3034]
 gi|307626016|gb|ADN70320.1| NAD-dependent DNA ligase LigA [Escherichia coli UM146]
 gi|315288164|gb|EFU47564.1| DNA ligase, NAD-dependent [Escherichia coli MS 110-3]
 gi|323949546|gb|EGB45434.1| DNA ligase [Escherichia coli H252]
 gi|323955668|gb|EGB51426.1| DNA ligase [Escherichia coli H263]
 gi|331054231|gb|EGI26258.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
          Length = 671

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LG+R VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGVREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|110642595|ref|YP_670325.1| NAD-dependent DNA ligase LigA [Escherichia coli 536]
 gi|191174600|ref|ZP_03036093.1| DNA ligase, NAD-dependent [Escherichia coli F11]
 gi|300997757|ref|ZP_07181842.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
 gi|306814500|ref|ZP_07448662.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
 gi|122958158|sp|Q0TF55|DNLJ_ECOL5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110344187|gb|ABG70424.1| DNA ligase [Escherichia coli 536]
 gi|190905126|gb|EDV64772.1| DNA ligase, NAD-dependent [Escherichia coli F11]
 gi|222034142|emb|CAP76883.1| DNA ligase [Escherichia coli LF82]
 gi|300304141|gb|EFJ58661.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
 gi|305851894|gb|EFM52346.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
 gi|312947007|gb|ADR27834.1| NAD-dependent DNA ligase LigA [Escherichia coli O83:H1 str. NRG
           857C]
 gi|324011127|gb|EGB80346.1| DNA ligase, NAD-dependent [Escherichia coli MS 60-1]
          Length = 671

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLHLL 669


>gi|82777805|ref|YP_404154.1| NAD-dependent DNA ligase LigA [Shigella dysenteriae Sd197]
 gi|309784866|ref|ZP_07679499.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
 gi|123728534|sp|Q32DE2|DNLJ_SHIDS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81241953|gb|ABB62663.1| DNA ligase [Shigella dysenteriae Sd197]
 gi|308927236|gb|EFP72710.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
          Length = 671

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTILAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGSEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++ +Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLVFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D++   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDSREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|330912204|gb|EGH40714.1| DNA ligase [Escherichia coli AA86]
          Length = 671

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIIINVEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|170767420|ref|ZP_02901873.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
 gi|170123754|gb|EDS92685.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
          Length = 671

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/711 (33%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQKLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y +++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKEWGLPVSDRVTLCESAEEVLAFYRKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEELGFVARAPRWAVAFKFPAQEQMTYVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATATGLAAYFGTLETLEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLIELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|331663971|ref|ZP_08364881.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
 gi|331059770|gb|EGI31747.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
          Length = 671

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|238765534|ref|ZP_04626449.1| DNA ligase [Yersinia kristensenii ATCC 33638]
 gi|238696249|gb|EEP89051.1| DNA ligase [Yersinia kristensenii ATCC 33638]
          Length = 670

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/712 (35%), Positives = 406/712 (57%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   +  +   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKSAE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNDEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+N V+       ++++Y +++  R+ L +DIDG+V KVD   
Sbjct: 236 PRSHIQRLMQFKHWGLPVSNRVKLCTGSEQVITFYRQVEQDRAGLGFDIDGVVIKVDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A ++EG+G + 
Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL   + T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTLTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+I+A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLTNLRAA----------DIEALKSVPDVGEIVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +EAL K +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLGEEHNQKVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670


>gi|16765747|ref|NP_461362.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167991721|ref|ZP_02572820.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|197262860|ref|ZP_03162934.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|81522316|sp|Q8ZN89|DNLJ_SALTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|16420966|gb|AAL21321.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|197241115|gb|EDY23735.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205329843|gb|EDZ16607.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247627|emb|CBG25454.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267994529|gb|ACY89414.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158979|emb|CBW18492.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312913414|dbj|BAJ37388.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222873|gb|EFX47944.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323130756|gb|ADX18186.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332989355|gb|AEF08338.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 671

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/711 (33%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQELLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKSKTTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|218705919|ref|YP_002413438.1| NAD-dependent DNA ligase LigA [Escherichia coli UMN026]
 gi|293405854|ref|ZP_06649846.1| DNA ligase [Escherichia coli FVEC1412]
 gi|298381604|ref|ZP_06991203.1| DNA ligase [Escherichia coli FVEC1302]
 gi|254781326|sp|B7N602|DNLJ_ECOLU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218433016|emb|CAR13911.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026]
 gi|284922366|emb|CBG35453.1| DNA ligase [Escherichia coli 042]
 gi|291428062|gb|EFF01089.1| DNA ligase [Escherichia coli FVEC1412]
 gi|298279046|gb|EFI20560.1| DNA ligase [Escherichia coli FVEC1302]
          Length = 671

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|239825842|ref|YP_002948466.1| NAD-dependent DNA ligase LigA [Geobacillus sp. WCH70]
 gi|239806135|gb|ACS23200.1| DNA ligase, NAD-dependent [Geobacillus sp. WCH70]
          Length = 670

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/717 (35%), Positives = 389/717 (54%), Gaps = 53/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A K +  L + ++ ++  YY   +P + D+EYD L +   A+   +PDL      
Sbjct: 1   MDRQAAMKRIEELRELLNKYNYEYYVLDRPSVPDAEYDRLMQELIALEEQYPDLKTK--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+   +  KV H  P LSL   +N  DLR F  R+ +       + + +  E
Sbjct: 58  DSPSQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVRQEVG----DDVAYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L LN P  +E RGE 
Sbjct: 114 LKIDGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLP--LRLNEPVTLEARGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN++    G + +ANPRNAA+G LR+L+P     R+L+ FV+ L    E+ 
Sbjct: 172 YMPKASFERLNEQRRNRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYSLANAEELG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L  ++ LGF  N   R+      ++ + NE    RS LPY+IDG+V KVD F 
Sbjct: 232 IDSHSAALDYLQQLGFKTNPERRRCANIDEVIQFVNEWHEKRSHLPYEIDGIVVKVDSFE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            QKQLG  A+SPRW +++KF  ++  T+L+ I++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQKQLGATAKSPRWAVAYKFPAEEVVTKLIGIELSVGRTGVVTPTAILEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV+++ + R  +  PF  
Sbjct: 352 ATLHNEDFIR-----------QKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR A NIEGLG++ 
Sbjct: 401 PTHCPECASELVRFDGE------VALRCINP-KCPAQIREGLIHFVSRQAMNIEGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       I   AD++ L + Q     ++      G+ S TNL  +I   +  SL
Sbjct: 454 ISQLFRE----GLIHDVADLYRLTKEQLIRLERM------GEKSATNLLRAIEASKQNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A+ LA+++ +           +          + +  +G+ +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKVLAEHFGTMDRLQTATKEEL----------MAIHEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++  P     +  L         +        +V S    K +V TG L+ + R++
Sbjct: 554 SIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTVVLTGKLESLSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + QLG  V+  +S+ TD++I G + GSKL KAQQL ++I +EE+FL  ++Q  
Sbjct: 614 AKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLNIEIWDEERFLQEIEQNK 670


>gi|161612830|ref|YP_001586795.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|190359282|sp|A9N362|DNLJ_SALPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161362194|gb|ABX65962.1| hypothetical protein SPAB_00529 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 671

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL CSAQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICSAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|304392246|ref|ZP_07374188.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130]
 gi|303296475|gb|EFL90833.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130]
          Length = 716

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/718 (43%), Positives = 455/718 (63%), Gaps = 12/718 (1%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R+++P   L+ EQA +EL++L  EI+ HD  Y+    P I D  YD L++R  AI   FP
Sbjct: 7   REIVP-RKLTDEQAAEELAALASEIAEHDARYHNDDAPTISDGAYDTLRKRNTAIEERFP 65

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           DL R    + P N +G  +     K+TH +P LSL+  ++  D+  F   + RF   K+ 
Sbjct: 66  DLVRE---DSPSNNVGSPVQSKFDKITHKVPMLSLDNAFDDGDVADFSASVRRFLNWKEG 122

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIP 182
           + + FT EPKIDG  + +RYE+G+ V AA RGDG  GE+V+A  R +  IPR L   N+P
Sbjct: 123 DPLTFTAEPKIDGLSLALRYERGELVSAATRGDGQVGENVTANARTVKDIPRKLSGGNVP 182

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           +I+E+RGEVYI K DF ALN EM A G++ Y NPRN A+G LR+L+     +R L FF +
Sbjct: 183 DIVEIRGEVYIGKADFAALNVEMEAAGKQLYVNPRNTAAGSLRQLDSRITASRPLKFFAY 242

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+ S++ A  Q+ M+++M   GF  N    +  +   +V++Y  ++  R+ L YDIDG
Sbjct: 243 AWGEMSKLPADTQFAMIEQMAAWGFSTNPLTARLESVEALVAHYRTIEESRAGLDYDIDG 302

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD+  LQ +LG  +R PRW I+HKF  + A+T L +I+IQIGRTG L+PVARL+PV
Sbjct: 303 VVYKVDDLGLQGRLGFASRVPRWAIAHKFPAELATTILREIEIQIGRTGALSPVARLDPV 362

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG +++NATLHNEDYI G+ ++G+ +R GRD+R+GD V + RAG+VIPKV+D+ +++R
Sbjct: 363 TVGGVVVSNATLHNEDYIAGVGSNGEPIREGRDLRIGDTVTIFRAGDVIPKVMDVDLSKR 422

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                PF FP+ CP C S  VR ++ KTG+  +  RCTGG  C AQ +E +KHFVSR+AF
Sbjct: 423 TAKE-PFEFPTVCPACGSPAVRPIDEKTGRADSVRRCTGGFICPAQAVEGIKHFVSRNAF 481

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+G G +Q + F +       +  PADIFTL+ R + S  ++EN  G+G  S   L+D+
Sbjct: 482 DIDGFGDKQAELFHELGM----VMNPADIFTLRERDKRSLKRLENRDGYGKTSANKLFDA 537

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I+ RR I L RFIF+LGIRHVG   A+ LA++Y         I+       + W+ ++ +
Sbjct: 538 IDDRRKIDLHRFIFALGIRHVGEGNAKLLARHYRDADTLLAAIDAAQDREGEAWVEMLDI 597

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
              G+  A A+++F  +P     V+ALL EV+P+    +   SS I  K +VFTGTL++ 
Sbjct: 598 DGFGETAATALLDFMADPNRRGVVDALLTEVTPN-PVEQVASSSPIAGKTIVFTGTLEQT 656

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R +A+    +LGA VS  +S KTD+++ G+  GSKL+KA +LGV  ++E+ +L L+ 
Sbjct: 657 TRSEAKAVAERLGAKVSGSVSAKTDLLVAGEKAGSKLKKAAELGVDTLDEQGWLDLVA 714


>gi|15802944|ref|NP_288973.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 EDL933]
 gi|12516784|gb|AAG57530.1|AE005471_7 DNA ligase [Escherichia coli O157:H7 str. EDL933]
          Length = 671

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y   +  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYXXXEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P++CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWXAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|168238909|ref|ZP_02663967.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734182|ref|YP_002115493.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|254781415|sp|B4TQF8|DNLJ_SALSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194709684|gb|ACF88905.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288317|gb|EDY27698.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 671

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/712 (33%), Positives = 394/712 (55%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL 
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEMIRLLD 670


>gi|238759468|ref|ZP_04620632.1| DNA ligase [Yersinia aldovae ATCC 35236]
 gi|238702365|gb|EEP94918.1| DNA ligase [Yersinia aldovae ATCC 35236]
          Length = 670

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/710 (34%), Positives = 401/710 (56%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELVTN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   +  +   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKSVE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           +    F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPLAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     L + +  G PV++ V+       ++++Y +++  R+ L +DIDG+V KVD+  
Sbjct: 236 PRSHIARLMQFKAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D Q   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDTQEIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PEHCPVCGSDIERIEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL   + T   ++      G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTLTAGKLTGLDRM------GPKSAQNLIVALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  V  VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLANLRAA----------DIDALKSVQDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +EAL + +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVMNFLNEEHNQKVIEALEQVISWPEPQQIVVEEIDSPFAGKTVVLTGSLTMLSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668


>gi|238912842|ref|ZP_04656679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 671

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLERLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGINVIDEAEMIRLL 669


>gi|293391716|ref|ZP_06636050.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952250|gb|EFE02369.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 671

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/707 (35%), Positives = 399/707 (56%), Gaps = 45/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L + + +H+  Y+    P I DSEYD L  +  A+    P+L  +   + P  
Sbjct: 5   IQQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTA---DSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G        ++ H IP LSL+  ++ E+   F+ RI           + F  EPK+DG
Sbjct: 62  RVGARPLSEFAQIRHEIPMLSLDNAFSNEEFFAFVKRIQDRLALVP-EPLTFCCEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             ++I Y  G    AA RGDG +GED++  IR I  IP ++L+ N P  +EVRGEV++  
Sbjct: 121 LAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPH 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKG 253
             F  LN+  +  G K +ANPRNAA+G LR+L+P   + R L    + +G    +     
Sbjct: 181 AGFERLNERALQHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPPT 240

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E LQ ++ +G PVNN ++  +    ++++Y  + + RS+L YDIDG V K+++ +LQ+
Sbjct: 241 HFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQ 300

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +++PRW I++KF  ++  T L +++ Q+GRTG +TPVA+L+PV + G  ++NATL
Sbjct: 301 RLGFISKAPRWAIAYKFPAQEELTELNEVEFQVGRTGAITPVAKLKPVFVAGVTVSNATL 360

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L+           I +GD V+++RAG+VIP+++ ++ + R  DA+   FP+ 
Sbjct: 361 HNGDEIERLN-----------IAIGDTVIIRRAGDVIPQIIGVVHDRRPADARQIVFPTE 409

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ 
Sbjct: 410 CPVCGSLIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQ 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     I  PAD+F L        T +  +   G  S  N   S+ K +N +L RF
Sbjct: 464 LVDRE----LIHTPADLFKL------DLTTLSRLERMGPKSAENALTSLEKAKNTTLARF 513

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG   A +LA ++ + +          A  N D   L +VP VG+++A  I 
Sbjct: 514 IFALGIRDVGEATALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 563

Query: 614 EFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F+    N+  VE L+ + V       ++   +  + K +V TGTL ++ R+ A+  + Q
Sbjct: 564 VFWHEAHNVAVVEDLIAQGVHWETVDVQEVKENPFKGKTVVLTGTLSQMGRNDAKALLQQ 623

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LGA VS  +S KTD +I G+  GSKL KA +LGV++++EE+FL  + 
Sbjct: 624 LGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFLGWIN 670


>gi|204929538|ref|ZP_03220612.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321257|gb|EDZ06457.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 671

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEMIRLL 669


>gi|148257407|ref|YP_001241992.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+))
           [Bradyrhizobium sp. BTAi1]
 gi|166215399|sp|A5EPJ2|DNLJ_BRASB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146409580|gb|ABQ38086.1| DNA ligase (Polydeoxyribonucleotide synthase (NAD+))
           [Bradyrhizobium sp. BTAi1]
          Length = 716

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/722 (41%), Positives = 452/722 (62%), Gaps = 14/722 (1%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K ++ + +  L+  QA+ E   L  E+  HD  YYQ   P I D+EYD L+RR +AI   
Sbjct: 6   KPKKPVDVAELTKAQAKVEWKRLALELEVHDRLYYQDDAPKISDAEYDELRRRFNAIETR 65

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L  SE    P  K+G   +    KV H++P LSL+  +  ED+R F+ RI RF +  
Sbjct: 66  FPELVSSE---SPSQKVGASPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLKLA 122

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
           DD  I F+ EPKIDG  +++RYE G+ V AA RGDG  GEDV+A IR +  +P+ L   N
Sbjct: 123 DDR-IDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLKDVPQKLHGRN 181

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P++ EVRGEVY++K  FLALN+     G   +ANPRN+A+G LR+ +P    +R L FF
Sbjct: 182 WPDVCEVRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPAITASRPLGFF 241

Query: 240 VHGLGKTSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +  G+ S     + Q  M++     GF  N   R  ++   +++++  ++  R+ L YD
Sbjct: 242 AYAWGEISGTPPAETQTGMIKWFEQCGFTTNPLTRLCHSVEELIAFHRSIEEQRAELDYD 301

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q++LG  +R+PRW I+HKF  ++A T L DI+IQ+GRTG LTPV +L
Sbjct: 302 IDGVVYKVDRIDWQERLGFVSRTPRWAIAHKFPAERAMTVLKDIEIQVGRTGSLTPVGKL 361

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GG ++ N TLHNEDYIKG+   G+V+R GRDIR+GD V+++RAG+VIP+VVD+++
Sbjct: 362 EPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVI 421

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R   A+PF  P  CP      V      TG+  +  RCTG  AC  Q++E LK F SR
Sbjct: 422 DKRPAQARPFHLPKTCPCPLHTDVVREETATGEEGSRARCTGEFACPYQKIEHLKLFASR 481

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            AF+I+GLG++Q+ FFF+       ++ PADIFTLQ+R   +  K+E I G+G+ SV NL
Sbjct: 482 RAFDIDGLGEKQIAFFFEQ----GWVKEPADIFTLQKRN--AGLKLEEIEGYGETSVRNL 535

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +++I+ RR I+LERFI++LG+RHVG   A +LA+ Y S+  F +    + A + +    +
Sbjct: 536 FNAIDARREIALERFIYALGMRHVGETTALALARGYGSWDAFHEACLKVAAGDEEAIAEM 595

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  +GD + +++  ++    N   VE L +EV   +   +    S I  K +VFTGTL
Sbjct: 596 DALDQIGDTVIKSVAAYFAEDHNRGIVERLTQEVKI-LDAEKPKRHSPIATKTVVFTGTL 654

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R +A+    +LGA VS  +S+KTD ++ G   GSKL++AQ+ GV+++ E+++L L+
Sbjct: 655 EKMTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKEAQKHGVQVLTEDEWLQLI 714

Query: 719 QQ 720
            +
Sbjct: 715 AE 716


>gi|296445905|ref|ZP_06887856.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b]
 gi|296256573|gb|EFH03649.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b]
          Length = 713

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/715 (40%), Positives = 447/715 (62%), Gaps = 23/715 (3%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           +R+  P+  LS  +A+ E S L +EI+ +D  YYQ   P I D+EYDAL++R +A+  AF
Sbjct: 15  ERERPPVAELSPRRAKLEHSRLAEEIAEYDRRYYQEDDPAISDAEYDALRQRYEALEKAF 74

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L            +G        K+ H +  LSL  ++  E++ +F+ R+ RF    D
Sbjct: 75  PELGGDA---SLTKTVGAAPAEKFAKIRHVVRMLSLGNVFADEEVHEFVARVRRFLNFSD 131

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-I 181
              + FT EPKIDG   ++RYEKG+ V AA RGDG  GED++A IR +  IP+ L  + I
Sbjct: 132 AAPLLFTAEPKIDGLSCSLRYEKGELVSAATRGDGEEGEDITANIRTLEEIPQRLRGDVI 191

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
           PE++E+RGEVY+ + DF ALN      G+  +ANPRN+A+G LR+L+P    +R L FF 
Sbjct: 192 PEVLEIRGEVYMRREDFFALNQRQAEAGKPLFANPRNSAAGSLRQLDPNVTASRPLRFFA 251

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           +G G+ S + A  Q  M+Q     G   N   +   +   ++++Y  ++++R+TL YDID
Sbjct: 252 YGWGEVSVMPADTQLGMVQAFASFGLATNPLTQLCGSAEELLAHYRNIEALRATLGYDID 311

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKVD+  LQ +LG  +R+PRW ++HKF  +QA T + DI+I +GRTG LTP+ARLEP
Sbjct: 312 GVVYKVDDIGLQIRLGFVSRAPRWAVAHKFPAEQAKTIVRDIEINVGRTGALTPIARLEP 371

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG +++NATLHNED I             +DIR+GD V+V+RAG+VIP++V++++++
Sbjct: 372 VTVGGVVVSNATLHNEDEIAR-----------KDIRIGDTVVVQRAGDVIPQIVEVVLDK 420

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R   A P+ FP  CP C S  +R+++ K G      RCTG L C AQ +ERLKHF SR+A
Sbjct: 421 RPEGATPYVFPHECPACGSAALREIDEK-GVEDVVRRCTGSLVCPAQAIERLKHFASRNA 479

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IEGLG +Q+++FF        +R  ++IFTL  R + S TK+EN  G+G+ SV NL+ 
Sbjct: 480 MDIEGLGDKQIEYFFTD----GLVRTASEIFTLAERDRASLTKLENKEGYGETSVRNLFA 535

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I+ RR + + RF+++LGIRHVG   AR LA+++  + +  ++     A  ++    +  
Sbjct: 536 AIDARRTVPINRFLYALGIRHVGETNARRLARHFPDFASL-RDTAREAAPGSEARERIES 594

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G ++A+A+ +F+  P N   ++ALL  VS       +N  S +  K +VFTG L++
Sbjct: 595 IEGIGGVVAEALHDFFAEPHNEREIDALLAHVSLEPMPTIENA-SPVAGKTVVFTGALER 653

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + R +A+    + GA +S  +S+KTD+++ G   GSKL KA++LGV++++EE++ 
Sbjct: 654 LTREEAKAQAERFGAKISGSVSKKTDLVVAGPGAGSKLAKAKELGVEVISEEEWF 708


>gi|197247622|ref|YP_002147380.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|254781407|sp|B5F0F5|DNLJ_SALA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197211325|gb|ACH48722.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 671

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/712 (33%), Positives = 393/712 (55%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL 
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLD 670


>gi|168261543|ref|ZP_02683516.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205349337|gb|EDZ35968.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 671

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|161502427|ref|YP_001569539.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|190359281|sp|A9MIG0|DNLJ_SALAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160863774|gb|ABX20397.1| hypothetical protein SARI_00461 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 671

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R   A+    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRALEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++++Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLAFYHNVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIDRL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +    
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATIF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALQAASIDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNREVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669


>gi|207857840|ref|YP_002244491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|254781409|sp|B5R3V4|DNLJ_SALEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206709643|emb|CAR33993.1| DNA ligase [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
          Length = 671

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + V S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEVDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|315634861|ref|ZP_07890143.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
 gi|315476413|gb|EFU67163.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
          Length = 671

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/707 (35%), Positives = 400/707 (56%), Gaps = 45/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L + + YH+  Y+    P I DSEYD L  +  A+    P+L  +   + P  
Sbjct: 5   IQQQIDDLRKTLRYHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELITA---DSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G        ++ H +P LSL+  ++ E+   F+ RI           + F  EPK+DG
Sbjct: 62  RVGARPLSEFAQIKHELPMLSLDNAFSDEEFLAFVKRIQDRLVLVP-EPLTFCCEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             ++I Y  G    AA RGDG +GED++  IR I  IP ++L+ N P  +EVRGEV++  
Sbjct: 121 LAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPH 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKG 253
           + F  LN+  +  G K +ANPRNAA+G LR+L+P   + R L F  + +G    I     
Sbjct: 181 DGFERLNERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQGIDLPPT 240

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E LQ ++ +G PVN+ +R  +    ++++Y  M   RS+L YDIDG V KV++  LQ+
Sbjct: 241 HFERLQWLKSIGVPVNSEIRLCDGVENVLNFYRTMMEKRSSLGYDIDGTVLKVNDIELQQ 300

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L+PV + G  ++NATL
Sbjct: 301 RLGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNATL 360

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L+           I +GD V+++RAG+VIP+++ ++ + R  +A+   FP+ 
Sbjct: 361 HNGDEIERLN-----------IAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQIVFPTR 409

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ 
Sbjct: 410 CPVCDSLIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGAKLIEQ 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L     T+ T+   +   G  S  N   S+ K ++ +L RF
Sbjct: 464 LVDRE----LVHTPADLFKLD---LTTLTR---LERMGPKSAENALASLEKAKHTTLARF 513

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG   A +LA ++ + +          A  N D   L +VP VG+++A  I 
Sbjct: 514 IFALGIRDVGEATALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 563

Query: 614 EFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F++   N+  V  L+ + V       +    +  + K +V TGTL ++ R+ A+  + Q
Sbjct: 564 VFWREEHNVAVVNDLIAQGVHWETVEVQDVKENPFKGKTVVLTGTLSQMGRNDAKALLQQ 623

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LGA VS  +S KTD +I G+  GSKL KA +LGV++++EE+FL  + 
Sbjct: 624 LGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFLAWVN 670


>gi|317491275|ref|ZP_07949711.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920822|gb|EFV42145.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 678

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/703 (34%), Positives = 387/703 (55%), Gaps = 52/703 (7%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
              + +H+  Y+    P I D+EYD L R   A+    P+L     P+ P  ++G     
Sbjct: 17  RTALRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEQHPELI---TPDSPTQRVGAAPLS 73

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
           +  +V H +P LSL+ +++ E    F  R++   +  +   + F  E K+DG  +++ YE
Sbjct: 74  AFSQVRHEVPMLSLDNVFDDESYLAFDKRVHDRLKTAE--PLTFCCELKLDGLAVSLLYE 131

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALND 203
            G  V  A RGDG +GED++A ++ I  IP  L   NIP  +EVRGEV++    F A+N+
Sbjct: 132 DGVLVRGATRGDGTTGEDITANVKTIRAIPLRLQGDNIPRRVEVRGEVFMPLAGFEAMNE 191

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEMLQKM 261
           E      K +ANPRNAA+G LR+L+P     R L FF +G+G           Y  LQ+ 
Sbjct: 192 EARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLMDGGELPASHYARLQQF 251

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           +  G PV++ V++      ++ +Y +++  R TL +DIDG+V KVD   +Q+QLG  AR+
Sbjct: 252 KAWGLPVSDRVKRCTGSDEVLKFYRQVEQERPTLGFDIDGVVIKVDSIEIQEQLGFVARA 311

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW  + KF  ++  T +  ++ Q+GRTG +TPVARLEPV + G +++NATLHN D I  
Sbjct: 312 PRWATAFKFPAQEQMTVVNGVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHNADEIDR 371

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
           L            +R+GD V+V+RAG+VIP+VV ++  +R  +AQ   FP  CP+C S V
Sbjct: 372 L-----------GLRIGDTVIVRRAGDVIPQVVGVVEAQRPENAQEIVFPQHCPVCGSDV 420

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + ++   + E   
Sbjct: 421 ERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIEQLVEKE--- 471

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             ++ PAD++ L     T   ++      G  S TNL +++ K +  +L RF+++LGIR 
Sbjct: 472 -YVKTPADLYRLTAGILTGLDRM------GPKSATNLVNALAKSKETTLARFLYALGIRE 524

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   A +LA ++ S +          A    D  +L  V  VG+++A+ +  F     N
Sbjct: 525 VGEATAANLAAHFGSLE----------ALREADVEALKSVQDVGEVVAKHVRHFLGEEHN 574

Query: 622 ICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
              ++        +   +P +   E+ + S    K +V TG+L  + R +A++ +  LGA
Sbjct: 575 QKVIDELISDEIGIHWPAPQVIVAEE-IDSPFAGKTVVLTGSLSLMPRDEAKDRLAALGA 633

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 634 KVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLL 676


>gi|302390293|ref|YP_003826114.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646]
 gi|302200921|gb|ADL08491.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646]
          Length = 672

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/716 (35%), Positives = 387/716 (54%), Gaps = 48/716 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +A   +  L + I+YH+  YY Y  P+I D+EYD L R+ + +   FP+L     P
Sbjct: 1   MDRSEAEARIKELRELINYHNRQYYVYDNPVISDAEYDKLMRQLEKLEKQFPELI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      +V H +P +SL   ++  +L+ F  R+         + + + +E
Sbjct: 58  DSPSQRVGGEPLPYFTQVVHRVPMMSLANAFDSGELKDFHRRVTEAVG----SEVQYVVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
           PKIDG  ++I YE G F  AA RGDG  GEDV+  ++ I ++P  L       P ++EVR
Sbjct: 114 PKIDGLAVSITYENGIFKTAATRGDGEVGEDVTQNVKTIKSVPLSLDFPPDKRPAVLEVR 173

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ K DF  LN+E    G   +ANPRNAA+G LR+L+P     R L  +++GLG   
Sbjct: 174 GEVYLPKEDFRKLNEEREEQGLPLFANPRNAAAGSLRQLDPKVTAKRPLAVYIYGLGYAE 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            I  +  YE+LQ  + +G  VN  V   + F  ++ Y       R  LPY+IDG+V KV+
Sbjct: 234 GIEFETHYEVLQFFKRIGLRVNPHVVLFDRFQDVIDYCMSWNEKRHDLPYEIDGMVIKVN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q  LG  A+SPRW I++KF  +Q  T + DI +++GRTG+LTP A LEPV + G+ 
Sbjct: 294 SLKQQGILGATAKSPRWAIAYKFPAEQKKTVIKDIIVRVGRTGVLTPTAILEPVRVAGST 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNEDYI+            +DI++GD V++ +AG+VIP+VV+++  +R    + 
Sbjct: 354 VSKATLHNEDYIR-----------EKDIKIGDTVIIHKAGDVIPEVVEVVKEKRTGKERD 402

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C S  VR          AA+RCT    C AQ    ++HF SRDA +I GLG
Sbjct: 403 FEMPHRCPECGSEAVRLPGE------AAYRCTNSTGCPAQIRRSIEHFASRDAMDIRGLG 456

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +            I+  AD++ L+R       ++      G+ S  NL  +I + + 
Sbjct: 457 SAIVSLLISQ----GLIKDAADLYYLKREDLVPLERM------GEKSAANLLAAIEESKK 506

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L+R I++LGI  VG+  A  LA+ + S  +  +            +  LI+VP +GD 
Sbjct: 507 RPLDRLIYALGIPFVGSRTASLLAEAFSSIDDLQKA----------KYEDLIKVPEIGDK 556

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IAQ+I+ F++  +    +  L         + +      ++    V TGTL+K  R +A 
Sbjct: 557 IAQSILAFFRQEQTNDLISRLRAAGVNMEAQKKAEGPRPLDGLTFVLTGTLEKYTRQQAT 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           E + +LG  V+  +S+KTD ++VG +PGSK E A +LG+KI+NE +F  L++++  
Sbjct: 617 ELIEKLGGRVTGSVSKKTDYVVVGKDPGSKYENALKLGIKILNEGEFEELIEKWKA 672


>gi|168466836|ref|ZP_02700690.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195630762|gb|EDX49354.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 671

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAVKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|82544871|ref|YP_408818.1| NAD-dependent DNA ligase LigA [Shigella boydii Sb227]
 gi|123741957|sp|Q31Y68|DNLJ_SHIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81246282|gb|ABB66990.1| DNA ligase [Shigella boydii Sb227]
          Length = 671

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G     N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKLAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|329297490|ref|ZP_08254826.1| NAD-dependent DNA ligase LigA [Plautia stali symbiont]
          Length = 672

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/712 (35%), Positives = 401/712 (56%), Gaps = 49/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   ++++++L   + +H+  Y+    P I D+EYD L R    +  A PDL     P+ 
Sbjct: 1   MTSVQEQITALRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELESAHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+  ++      F  R+    +  D+  + +  E K
Sbjct: 58  PTQRVGAAPLATFEQVRHEVPMLSLDNTFDEAGFLAFNKRMQDRLKSTDN--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGLLVRAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           ++++ F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G G       
Sbjct: 176 MTESGFEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               ++ LQ+ +  G PV++ +R  +T   ++++Y +++  R +L +DIDG+V KVD  +
Sbjct: 236 PASHWQRLQQFKAWGLPVSDRIRLVHTADEVLAFYRQVEQDRPSLGFDIDGVVIKVDSQA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  DA+   F
Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPADAREIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S V            A  RCTGGL C AQ+ E LKHFVS  A +++G+G + 
Sbjct: 405 PSHCPVCGSDVESVEGE------AVTRCTGGLICGAQRKEALKHFVSHRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+F L   + T   ++      G  S  N+ D++ K +  +L
Sbjct: 459 IDQLVEKE----YVKTPADLFRLTAGKLTGLDRM------GPKSAQNVVDALEKAKLTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++   +             N D  +LI V  VG ++A 
Sbjct: 509 PRFLYALGIREVGEATAANLANHFGELEKVM----------NADLDALIAVQDVGKVVAA 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F +   N   +  L  EV            + + S    K +V TG+L ++ R  A
Sbjct: 559 HVRNFMEEESNREVIRQLTDEVGVHWPAVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 619 KARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670


>gi|157144662|ref|YP_001451981.1| NAD-dependent DNA ligase LigA [Citrobacter koseri ATCC BAA-895]
 gi|166215574|sp|A8ADI2|DNLJ_CITK8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157081867|gb|ABV11545.1| hypothetical protein CKO_00382 [Citrobacter koseri ATCC BAA-895]
          Length = 671

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  D   + +  E K
Sbjct: 58  PSQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSGD--KLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  + AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLISAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPEAVLDFYHKVEEDRPTLGFDIDGVVIKVNSMA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVEF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  +   + S    K +V TG+L  + R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGIHWPAPIVVNADEIDSPFAGKTIVLTGSLSLMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669


>gi|238799224|ref|ZP_04642672.1| DNA ligase [Yersinia mollaretii ATCC 43969]
 gi|238716921|gb|EEQ08789.1| DNA ligase [Yersinia mollaretii ATCC 43969]
          Length = 670

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/712 (35%), Positives = 408/712 (57%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  S   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   ++ +   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV++ V+       ++++Y +++  R++L +DIDG+V KVD+  
Sbjct: 236 PRSHIQRLMQFKAWGLPVSHRVKLCTGSEQVIAFYRQVEQDRASLGFDIDGVVIKVDDLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  DAQ   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAQEILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A ++EG+G + 
Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L   + T   ++      G  S  NL  +++K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFELTAGKLTGLDRM------GPKSAQNLIVALDKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNMANLRAA----------DIDALKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +EAL K +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLSEEHNQKVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670


>gi|168243193|ref|ZP_02668125.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449589|ref|YP_002046491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|254781411|sp|B4TCF6|DNLJ_SALHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194407893|gb|ACF68112.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205337689|gb|EDZ24453.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 671

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|113868039|ref|YP_726528.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
 gi|123133949|sp|Q0KA11|DNLJ_RALEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|113526815|emb|CAJ93160.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
          Length = 709

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/721 (35%), Positives = 387/721 (53%), Gaps = 54/721 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P   L  E A K ++ L  E+  H+  YY    P I D+EYDAL     A+    P+L  
Sbjct: 15  PAGPLPPEAAAKRVAWLRDELDRHNYQYYVLDAPTIPDAEYDALFSELQALELEHPEL-- 72

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
            + P+ P  ++GGE   +   V H +P LSL   +  +D+  F  R  +   +       
Sbjct: 73  -QTPDSPTQRVGGEPLSAFDSVRHRVPMLSLNNGFADDDVLNFDRRCAQGLGRTAPAAGE 131

Query: 124 -------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
                  +++ +  E K DG  +++RYE G+ V AA RGDG +GEDV+  +R I  IP  
Sbjct: 132 QDLFSAADAVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLK 191

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235
           L    P ++EVRGEV++ + DF  LN+     G K + NPRNAA+G LR+L+P     R 
Sbjct: 192 LRGQAPAVLEVRGEVFMYRGDFDKLNERQAEAGEKTFVNPRNAAAGSLRQLDPRITAKRP 251

Query: 236 LNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           L+FF +GLG+   +        ML     LG PV           G++ +Y ++   R  
Sbjct: 252 LSFFAYGLGELQGVDRPPTHSAMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGQRRDA 311

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPYDIDG+VYKV+  + Q++LG  +R+PR+ ++HKF  ++ +T + DI++Q+GRTG +TP
Sbjct: 312 LPYDIDGVVYKVNALAEQERLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITP 371

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG  +TNATLHNED I+            +D+ +GD V+V+RAG+VIP+VV
Sbjct: 372 VARLKPVFVGGVTVTNATLHNEDEIRR-----------KDVHIGDTVIVRRAGDVIPEVV 420

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            ++   R  DA+ F  P+ CP+C S + +  +       A  RCTGGL C+AQ+ + L H
Sbjct: 421 AVVTERRPDDARAFVMPTACPVCGSHIEKLEDE------AIARCTGGLICAAQRKQALLH 474

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F  R A +IEGLG + ++           +R PAD+F L   +  +  ++       D S
Sbjct: 475 FAQRRAMDIEGLGDKLVEQLVDQ----GIVRTPADLFKLGVAKLAALERMA------DKS 524

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL  +I+  R  ++ RFIF+LGIRHVG   A+ LA+++                   D
Sbjct: 525 AANLVAAIDASRETTMNRFIFALGIRHVGEATAKDLARHFGKLDALMAA----------D 574

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLV 653
             +L+ V  VG ++AQ+I  F+  P N+  +E L    V  +         + +  K  V
Sbjct: 575 EAALLEVNDVGPVVAQSIAHFFAEPHNVEVIEQLRAAGVHWTESEPVAKAPAPLSGKTFV 634

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL+KA+ LGV +++E  
Sbjct: 635 LTGTLPTMSREDAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAG 694

Query: 714 F 714
            
Sbjct: 695 M 695


>gi|200388789|ref|ZP_03215401.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199605887|gb|EDZ04432.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 671

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/712 (33%), Positives = 393/712 (55%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAVKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL 
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLD 670


>gi|168817829|ref|ZP_02829829.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205345161|gb|EDZ31925.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086917|emb|CBY96687.1| DNA ligase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 671

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/712 (34%), Positives = 395/712 (55%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLNQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL 
Sbjct: 619 ERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLLD 670


>gi|146342488|ref|YP_001207536.1| DNA ligase [Bradyrhizobium sp. ORS278]
 gi|166215400|sp|A4YZJ3|DNLJ_BRASO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146195294|emb|CAL79319.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
           [Bradyrhizobium sp. ORS278]
          Length = 716

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/721 (40%), Positives = 450/721 (62%), Gaps = 12/721 (1%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +Q + +  L+  QA+ E   L  E+  HD  YYQ   P I D+ YD L+RR +AI   
Sbjct: 6   KSKQSVDVADLTKAQAKVEWKRLALELETHDRLYYQEDAPKISDAAYDELRRRFNAIEKR 65

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L      + P   +G   +    KV H++P LSL+  +  ED+R F+ RI RF +  
Sbjct: 66  FPELVSR---DSPSQTVGAAPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLKLA 122

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
           +D+ I F+ EPKIDG  +++RYE G+ V AA RGDG  GEDV+A IR +  +P+ L   N
Sbjct: 123 EDDRIAFSAEPKIDGLSMSLRYEGGQLVTAATRGDGAEGEDVTANIRTLKDVPQKLHGRN 182

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P+I E+RGEVY++K  FLALN+     G   +ANPRN+A+G LR+ +PT   +R L FF
Sbjct: 183 LPDICEIRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPTITASRPLGFF 242

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G  S + A+ Q  M++     GF  N   +  ++   +++++  ++  R+ L YDI
Sbjct: 243 AYAWGDMSAMPAETQSGMIKWFEHCGFTTNPLTKLCHSVEELIAFHRAIEEQRAELDYDI 302

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +R+PRW I+HKF  ++A T L DI+IQ+GRTG  TPV +LE
Sbjct: 303 DGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLKDIEIQVGRTGSFTPVGKLE 362

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ N TLHNEDYIKG+   G+V+R GRDIR+GD V+++RAG+VIP+VVD++++
Sbjct: 363 PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVLID 422

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA+ F+FP  CP      V       G+  +  RCTG  AC  Q++E LK F SR 
Sbjct: 423 KRPADAEVFAFPRKCPCPLHTDVVREETAAGEEGSRARCTGEFACPYQKIEHLKLFASRR 482

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++Q+ FFF        ++ PADIFTLQ+R   +  K+E + G+G+ SV NL+
Sbjct: 483 AFDIDGLGEKQIQFFFDE----GWVKEPADIFTLQKRN--AKLKLEEVEGYGETSVRNLF 536

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           ++I  RR ++LERFI++LG+R+VG   A +LA+ Y S++ F      +   + +    + 
Sbjct: 537 NAIEARREMALERFIYALGMRYVGETTALALARGYGSWEAFHDACLKVANGDEEAIAEMD 596

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  +G+ + +++  ++    N   VE L +EV   +   +   +S I  K +VFTGTL+
Sbjct: 597 ALDQIGETVIKSVAAYFGEDHNRGIVERLTREVKI-LDAEKPKRNSPIATKTVVFTGTLE 655

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           K+ R +A+    +LGA VS  +S+KTD ++ G   GSKL+ A++ GVK++ E+++L L+ 
Sbjct: 656 KMTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVKVLTEDEWLQLIG 715

Query: 720 Q 720
           +
Sbjct: 716 E 716


>gi|224583040|ref|YP_002636838.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254781413|sp|C0PZB4|DNLJ_SALPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|224467567|gb|ACN45397.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
          Length = 671

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|194444893|ref|YP_002041687.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|254781412|sp|B4SZU5|DNLJ_SALNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194403556|gb|ACF63778.1| DNA ligase [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 671

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669


>gi|168231967|ref|ZP_02657025.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194471791|ref|ZP_03077775.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194458155|gb|EDX46994.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205333574|gb|EDZ20338.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 671

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/712 (33%), Positives = 393/712 (55%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL 
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLLD 670


>gi|167549563|ref|ZP_02343322.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205325268|gb|EDZ13107.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 671

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLETLQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669


>gi|62180995|ref|YP_217412.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|75481868|sp|Q57LT1|DNLJ_SALCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|62128628|gb|AAX66331.1| DNA ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715476|gb|EFZ07047.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 671

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAEGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|205353534|ref|YP_002227335.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|254781410|sp|B5RCP9|DNLJ_SALG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|205273315|emb|CAR38285.1| DNA ligase [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326628629|gb|EGE34972.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 671

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIEQL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|299131914|ref|ZP_07025109.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2]
 gi|298592051|gb|EFI52251.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2]
          Length = 706

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/726 (42%), Positives = 448/726 (61%), Gaps = 33/726 (4%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
            K+ + P+E L+  QA+ EL+ L  EIS HD+ YYQ   P + D++YD L++R  AI   
Sbjct: 5   AKKAVTPVENLTKAQAKVELTRLALEISMHDERYYQKDAPTVSDADYDKLRQRLSAIEER 64

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L      + P  K+G + + +  K+ H++P LSL   ++ ED+ +F TR+ RF    
Sbjct: 65  FPELVAK---DSPSQKVGAQPSRAFAKIRHAVPMLSLGNAFSDEDVAEFATRVRRFLNLG 121

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
            D  +    EPKIDG  +++RYE G+ V AA RGDG  GEDV+A +R I  +P  L    
Sbjct: 122 ADEPLVIVAEPKIDGLSLSLRYENGELVSAATRGDGFEGEDVTANVRTIKDVPHTLRGKG 181

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P I EVRGEVY+ + DFLALN +        +ANPRN+A+G LR+ N     +R L FF
Sbjct: 182 VPAICEVRGEVYMMREDFLALNKKQAEADDTIFANPRNSAAGSLRQKNVEVTASRPLKFF 241

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ SE+ A  Q+EM++ +   GF VN  +        +++YY E+++ R++LPYDI
Sbjct: 242 AYAWGEMSEMPAPTQFEMVKWLHKAGFVVNPRMTLCRDVEALLTYYREIETERASLPYDI 301

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q +LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG LTPVARL 
Sbjct: 302 DGVVYKVDRLDWQNRLGFISRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLT 361

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ NATLHNED I             +DIR GD V+++RAG+VIP+VV ++  
Sbjct: 362 PVTVGGVVVQNATLHNEDEIAR-----------KDIREGDTVVIQRAGDVIPQVVSVVTE 410

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  +A+ +SFP  CPIC S  VR+ +       A  RCTG L C AQ +ERLKHFVSR 
Sbjct: 411 KRRKNAKSYSFPHKCPICGSHAVREEDE------AVRRCTGALICPAQAVERLKHFVSRL 464

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLG +Q+  F+        I  P DIFTLQ+R   +  K+++  G+GDVSV NL+
Sbjct: 465 AFDIEGLGDKQIQEFYDD----GLIMHPVDIFTLQKRDARAVKKLKDREGYGDVSVNNLF 520

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA------QEINNIIAHNND 593
            +I+ RR I L R IF+LGIRHVG   A+ LA++Y S +N                + ++
Sbjct: 521 AAIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGSIENLRAAMAEAAAAQTEEGNTSE 580

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
            +  L  +  +GDI+A A+VEF+   RN+ A++ LL E+   +   +    S +  K +V
Sbjct: 581 AYADLNNIGGIGDIVADAVVEFFAEKRNVKALDELLAEIEV-LPAEQVRTDSAVAGKTVV 639

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTG+L K  R +A+    +LGA VS  +S+KTD ++ G+  GSKL KA++LGV ++ E++
Sbjct: 640 FTGSLTKFTRDEAKAQAERLGAKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDE 699

Query: 714 FLFLLQ 719
           +L L++
Sbjct: 700 WLKLIE 705


>gi|333016518|gb|EGK35849.1| DNA ligase, NAD-dependent [Shigella flexneri K-304]
          Length = 671

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARCTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G     N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKLAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|56412686|ref|YP_149761.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197361620|ref|YP_002141256.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81362021|sp|Q5PNE2|DNLJ_SALPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781414|sp|B5BB72|DNLJ_SALPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56126943|gb|AAV76449.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197093096|emb|CAR58535.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 671

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669


>gi|300897228|ref|ZP_07115672.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
 gi|300358986|gb|EFJ74856.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
          Length = 671

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  +   + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  AR+PRW ++ KF  ++  T + D++ ++GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFKVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|24113756|ref|NP_708266.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 301]
 gi|30063805|ref|NP_837976.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 2457T]
 gi|110806352|ref|YP_689872.1| NAD-dependent DNA ligase LigA [Shigella flexneri 5 str. 8401]
 gi|81723177|sp|Q83K81|DNLJ_SHIFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|122366427|sp|Q0T298|DNLJ_SHIF8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24052834|gb|AAN43973.1| DNA ligase [Shigella flexneri 2a str. 301]
 gi|30042060|gb|AAP17786.1| DNA ligase [Shigella flexneri 2a str. 2457T]
 gi|110615900|gb|ABF04567.1| DNA ligase [Shigella flexneri 5 str. 8401]
 gi|281601828|gb|ADA74812.1| DNA ligase, NAD-dependent [Shigella flexneri 2002017]
 gi|313650866|gb|EFS15266.1| DNA ligase, NAD-dependent [Shigella flexneri 2a str. 2457T]
 gi|332755453|gb|EGJ85817.1| DNA ligase, NAD-dependent [Shigella flexneri K-671]
 gi|332756263|gb|EGJ86614.1| DNA ligase, NAD-dependent [Shigella flexneri 2747-71]
 gi|333002064|gb|EGK21630.1| DNA ligase, NAD-dependent [Shigella flexneri K-218]
          Length = 671

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G     N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKLAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|254252054|ref|ZP_04945372.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
 gi|124894663|gb|EAY68543.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
          Length = 691

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/731 (35%), Positives = 394/731 (53%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L      +  
Sbjct: 1   MARTQAEPPASQPDARA----AWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQLEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L     P+ P  ++GG +      V H  P LSL   +  +D+  F  R+     K
Sbjct: 57  DHPELV---TPDSPTQRVGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALAK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE G FV AA RGDG +GEDV+  +R I +IP
Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L    +P +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+P    
Sbjct: 174 LKLKGRTVPAVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L     LG PVN      +   G+++++  +   
Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYEALGLPVNRERAVVHGADGLLAFFRRVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R  LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RDALPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGAVLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLVCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L        + +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFSTLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                 L+ V  VG I+A++I +F+    N   +E L        P      K     + 
Sbjct: 559 --SIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD +I G   GSKL KA++LG+ +
Sbjct: 617 GKTIVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|317049042|ref|YP_004116690.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b]
 gi|316950659|gb|ADU70134.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b]
          Length = 672

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/712 (35%), Positives = 401/712 (56%), Gaps = 49/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++++++L   + +H+  Y+    P + D+EYD L  +   +  A P+L     P+ 
Sbjct: 1   MKSVQEQITALRTTLRHHEYLYHVMDTPEVPDAEYDRLMAQLRELESAHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+  ++      F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLAAFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSSDD--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLVSAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           ++++ F  LN++    G K +ANPRNAA+G LR+L+P     R L FF +GLG       
Sbjct: 176 MTESGFEKLNEDARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  LQ+ +  G PV++ +R AN    ++++Y E++  R TL +DIDG+V KVD  +
Sbjct: 236 PASHLGRLQQFKAWGLPVSDRIRLANNADDVLAFYREVEEARPTLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVVVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  D +   F
Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPEDTREIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+F L   + T   ++      G  S  N+ D++ K +  +L
Sbjct: 459 IDQLVEKE----YVKTPADLFRLTAGKLTGLDRM------GPKSAQNVVDALEKAKFTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++   +               D  +LI V  VG ++A 
Sbjct: 509 PRFLYALGIREVGEATAANLANHFGELEKVMDA----------DLDALIAVQDVGQVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N   +  L +E+     + E      + S    K +V TG+L ++ R  A
Sbjct: 559 HVRNFMDEESNREVIRELTQEMGVHWPQVEVVNAAEIDSPFAGKTVVLTGSLSQMNRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 KARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 670


>gi|333001543|gb|EGK21111.1| DNA ligase, NAD-dependent [Shigella flexneri VA-6]
 gi|333002206|gb|EGK21770.1| DNA ligase, NAD-dependent [Shigella flexneri K-272]
 gi|333016032|gb|EGK35364.1| DNA ligase, NAD-dependent [Shigella flexneri K-227]
          Length = 671

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G     N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKLAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|322613832|gb|EFY10771.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617441|gb|EFY14340.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624929|gb|EFY21758.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629628|gb|EFY26404.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633942|gb|EFY30679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635621|gb|EFY32332.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639981|gb|EFY36651.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644326|gb|EFY40867.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322655311|gb|EFY51620.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658357|gb|EFY54623.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664357|gb|EFY60554.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668412|gb|EFY64568.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673252|gb|EFY69358.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676644|gb|EFY72712.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683394|gb|EFY79408.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685720|gb|EFY81713.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192602|gb|EFZ77831.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196835|gb|EFZ81978.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202141|gb|EFZ87199.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208024|gb|EFZ92969.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212850|gb|EFZ97659.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217119|gb|EGA01841.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219619|gb|EGA04102.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323229192|gb|EGA13316.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235493|gb|EGA19577.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237321|gb|EGA21384.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245552|gb|EGA29550.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248968|gb|EGA32891.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253065|gb|EGA36897.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255865|gb|EGA39610.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261411|gb|EGA44996.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266454|gb|EGA49942.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269716|gb|EGA53166.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 671

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H IP LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  +GA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|223041748|ref|ZP_03611941.1| DNA ligase [Actinobacillus minor 202]
 gi|223017432|gb|EEF15850.1| DNA ligase [Actinobacillus minor 202]
          Length = 680

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/706 (37%), Positives = 402/706 (56%), Gaps = 46/706 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L  ++  ++  Y+    P++ D+EYD L      +    P+L     P+ P  ++G
Sbjct: 15  EIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELI---TPDSPTQRVG 71

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH +P LSL+  ++ EDL  F+ R+  +      +S+ F  EPK+DG  +
Sbjct: 72  AKPLDGFSQVTHELPMLSLDNAFSDEDLDGFLRRMESYI-SVAPSSLAFCCEPKLDGLAV 130

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED++A IR I  IP  L   N P  +EVRGEV++ +  F
Sbjct: 131 SILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTDNPPLRLEVRGEVFMPQKGF 190

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG--KTSEIFAKGQY 255
            ALN + +  G K +ANPRNAA+G LR+L+P     R L    + +G   + +      +
Sbjct: 191 EALNQKALEKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPSTHF 250

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ ++ LG PVNN +R       ++ +Y ++++ R TL YDIDG V KV++ +LQ+QL
Sbjct: 251 ERLQWLKSLGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQL 310

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLHN
Sbjct: 311 GFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 370

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L            I +GD V+++RAG+VIP+++ I+   R  +A+  +FP+ CP
Sbjct: 371 GDEIERL-----------GIAIGDTVIIRRAGDVIPQIIGIVAERRPKNAKKITFPTACP 419

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           IC S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++   
Sbjct: 420 ICGSAVVRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLM 473

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + E     +  PAD+F L +       ++      G+ S  N  +SI K +N +L RF+F
Sbjct: 474 ERE----LVHTPADLFKLDQVTLMRLERM------GEKSAQNALNSIEKAKNTTLPRFLF 523

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A +LA ++ S                  +  L  V  VG+++A  IV F
Sbjct: 524 ALGIRDVGEATALNLANHFGSLDAIRAAT----------FEQLQEVQDVGEVVANRIVRF 573

Query: 616 YQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +Q P N+  VE L+++ V        +   + +++K +V TGTL  + R +A+  +  LG
Sbjct: 574 WQEPHNVEVVEDLIQQGVVWQNIEQVEIADNPLKDKNVVLTGTLSVLTRDQAKALLQGLG 633

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             VS  +S KTD +I G+  GSKL KAQ+LGVK+++E+ FL ++ Q
Sbjct: 634 CKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFLAIVGQ 679


>gi|332798609|ref|YP_004460108.1| DNA ligase [Tepidanaerobacter sp. Re1]
 gi|332696344|gb|AEE90801.1| DNA ligase [Tepidanaerobacter sp. Re1]
          Length = 675

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/720 (35%), Positives = 388/720 (53%), Gaps = 49/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I QA   +  L + I YH+  YY    P I D+EYD L R   ++   FP L     P
Sbjct: 1   MDIVQAENRIKELRESIDYHNYRYYVLDNPEITDAEYDKLMRELISLESQFPQLI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE   +  KVTH  P +SL   ++ E+LR F  R+         N + + +E
Sbjct: 58  DSPSQRVGGEPLEAFKKVTHREPMISLADAFSEEELRDFNRRVTENVG----NQVEYVVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            KIDG  +++ YE G  V AA RGDG  GEDV+  ++ I ++P  L      IP +IEVR
Sbjct: 114 LKIDGLAVSLTYENGLLVTAATRGDGVVGEDVTQNVKTIKSVPLRLNIQKDKIPMVIEVR 173

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+Y+SK  F  LN+E   +G   +ANPRNAA+G +R+L+      R L+ F++ LG   
Sbjct: 174 GEIYLSKEGFKKLNEEREEMGLPTFANPRNAAAGSIRQLDSKITAKRPLSTFMYALGYVE 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            I      E+L+  +  GF VN  ++  N F  ++ Y    K  R +LPY+IDG+V KV+
Sbjct: 234 GIEFNTHLEVLEFYKACGFKVNPHIKSFNNFDDVIDYCMSWKEKRHSLPYEIDGMVIKVN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               QK LG  A++PRW I++KF  +Q  + + DI + +GRTG+LTP A L PV I G+ 
Sbjct: 294 SLHFQKILGSTAKTPRWAIAYKFPAEQKISVIEDIVVSVGRTGVLTPNAVLTPVQIAGST 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNEDYIK            +DI +GD V+V++AG++IP+VV +I  +R  + + 
Sbjct: 354 VSRATLHNEDYIK-----------EKDIHIGDSVIVQKAGDIIPEVVAVIKEKRTGNEKE 402

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C S V+R           A+RCTG ++C AQ   R+ HF SRDA +I GLG
Sbjct: 403 FKMPHRCPECGSEVIRLPGE------VAYRCTG-VSCPAQIRRRIIHFASRDAMDIRGLG 455

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +            I+  +DI+ L++       ++      G+ S  NL  +I   + 
Sbjct: 456 PAIVSLLLSEN----LIKDVSDIYFLKKEALIPLERM------GEKSANNLIKAIENSKK 505

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R +++LGI  +G++ + +LA+ + S               N  +  LI++P +GD 
Sbjct: 506 QPLNRLVYALGIPLIGSKASLTLAQEFKSMDRLQ----------NATYEELIKIPEIGDK 555

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+ F++  +    +  L +     +   E+     +EN   V TG L+K  R KAQ
Sbjct: 556 MAESIIAFFKQEQTKALITRLKEAGVNMLYAKEEIGPKPLENLTFVLTGALEKYSRSKAQ 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
           E +  LG  V+  +S+KTD ++VG +PGSK  KA +LGVKI++E+QF  ++        I
Sbjct: 616 ELIENLGGKVTGSVSKKTDYVVVGKDPGSKYNKALELGVKILDEQQFEEMISNAQAETSI 675


>gi|270262950|ref|ZP_06191221.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
 gi|270043634|gb|EFA16727.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
          Length = 673

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/713 (33%), Positives = 395/713 (55%), Gaps = 50/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P + D+EYD L      + +A P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMNELRELENAHPELITA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R+    +  +   + F  E K
Sbjct: 58  PTQRVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE++++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLSGDNIPRRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E      K +ANPRNAA+G +R+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  ++ L + +  G PV++  +       ++++Y +++  R+ L +DIDG+V K+D+  
Sbjct: 236 PRSHWQRLMQFKNWGLPVSDRAKCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDID 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  AR+PRW  + KF  ++  T + +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQETLGFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIPKVV +I + R  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPKVVGVIEDRRPQDAREIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PLHCPVCGSDVERVEGE------AVTRCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + E     ++ PAD+F L     T   ++      G  S  NL +++ K +  + 
Sbjct: 459 IEQLVEKE----YVKNPADLFRLSAGILTGLDRM------GPKSAQNLVNALEKSKRTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++                   D  +L +VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGELPKLYAA----------DIDALKQVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALL-----KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            +  F     N   ++ L+           +    + + S    K +V TG+L ++ R +
Sbjct: 559 HVRHFLDEELNQKVIDELIGAEIGINWPEVVVVAAEEIDSPFAGKTVVLTGSLSQLSRDE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEAEMIRLL 671


>gi|323702801|ref|ZP_08114460.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
 gi|323532189|gb|EGB22069.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
          Length = 669

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/715 (35%), Positives = 395/715 (55%), Gaps = 49/715 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + A++ E  +  +  L +EI+YH+  YY    P I D +YD L +    + +A+P+L   
Sbjct: 1   MSAVTPE-IKARVEELRREINYHNHQYYVLDNPTITDGQYDQLVQELLRLENAYPELV-- 57

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  ++GGE+      V H +P LSL   ++  DLR+F  R+           + +
Sbjct: 58  -SPDSPTQRVGGEIQKGFTAVQHRVPMLSLSNAFSENDLREFDRRVRSNLP---GEEVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            LE KIDG  I++ YE+G FV  A RGDG  GED++A +R I  IP  +  +IP  +EVR
Sbjct: 114 VLELKIDGLAISLWYEQGVFVRGATRGDGELGEDITANLRTIKAIPLRIKESIP-FLEVR 172

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE Y+ K  F+ LN+     G   +ANPRNAA+G LR+L+P    +R L+ F++ +G   
Sbjct: 173 GEAYMPKESFVRLNEAREEAGEPLFANPRNAAAGSLRQLDPRVTASRNLSVFMYAIGHLE 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                    +L  ++ LGF VN   +       ++   ++ +  R  LPY IDGLV KV+
Sbjct: 233 GANPGTHARLLGWLKDLGFRVNQHYKLCKDIEEVIRQIDKWQEQRFELPYAIDGLVIKVN 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q++LG   +SPRW I++KF  +QA + + DI I++GRTG+LTP A LEPV + G  
Sbjct: 293 SLDQQQRLGATLKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTT 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED I+            +DIR+GD+ LV++AG++IP+VV +    R    +P
Sbjct: 353 VSKATLHNEDIIR-----------QKDIRIGDQALVQKAGDIIPEVVLVFPERRTGQEKP 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F+ PS CP C + VVR          AAHRCT    C A   E + HFVSR A +I GLG
Sbjct: 402 FTMPSTCPECNAPVVRLPGE------AAHRCTNK-NCPAISREGIIHFVSRGAMDIMGLG 454

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +  ++        A  ++ PAD++ L+        ++         S  NL ++I   ++
Sbjct: 455 ESIVNQLI----MAGLVQDPADLYDLKYEDLIKLERMGA------RSSQNLLNAIAASKH 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL + + +LGIRHVG   A+ LA+++ S       ++ ++A   +D      +P +G  
Sbjct: 505 NSLAQLLVALGIRHVGERAAKILARHFGS-------MSALMAATVEDLTV---IPEIGPK 554

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHK 665
           IA++IV+++  P N   ++ L +        +++       +  K  V TGTL+   R +
Sbjct: 555 IAESIVDYFARPENKTLIQRLDRAGVNMEEANQQAEPGQQPLAGKTFVITGTLEGFSRQE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           AQ  + +LG  VS  +S+KTD ++VG+NPGSK +KAQQLG+ I+NE++F+ LL+Q
Sbjct: 615 AQRAIEELGGKVSGSVSKKTDYVVVGENPGSKYDKAQQLGIPILNEQEFVALLKQ 669


>gi|163845839|ref|YP_001633883.1| DNA ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222523550|ref|YP_002568020.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl]
 gi|190359243|sp|A9WCA1|DNLJ_CHLAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781286|sp|B9LHI6|DNLJ_CHLSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163667128|gb|ABY33494.1| DNA ligase, NAD-dependent [Chloroflexus aurantiacus J-10-fl]
 gi|222447429|gb|ACM51695.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl]
          Length = 709

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/720 (37%), Positives = 380/720 (52%), Gaps = 55/720 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S       ++ L   I  +D  YY    PI+ D+EYDAL     A+  A P+L     P
Sbjct: 1   MSHTTVADRINELRSLIRRYDYHYYVLDDPIVSDAEYDALMTELRALEAAHPELI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G       KV H  P LSL   +   DL  +  R+ R      D  + + +E
Sbjct: 58  DSPTQRVSGTPASQFAKVQHPQPMLSLGNAFTKADLLAWRDRVLRLLG--PDAIVAYVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----------SLN 180
           PKIDG  + + Y  G+ V  A RGDG  GEDV+A +R I +IP  L              
Sbjct: 116 PKIDGLAVALTYRDGRLVQGATRGDGEVGEDVTANLRTIGSIPLTLQATSTPQDDDLPTT 175

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P  IEVRGEVY+   DF  LND + A G K +ANPRNAA+G LR+ +PT    R L FF
Sbjct: 176 LPTTIEVRGEVYMRTADFETLNDRLAAAGEKIFANPRNAAAGSLRQKDPTITAARPLRFF 235

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +G+G    I    Q++ L+ +R LGFPVN  VR+   F  +++Y     + R  LPY+ 
Sbjct: 236 AYGVGVVEGISLSSQWQTLRYLRALGFPVNQDVRRFTDFAEVLAYCEAWMAKRDDLPYEA 295

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V K+D+F+ Q++LG   R PRW I+ KF  ++A TRLLDI + +GRTG++TP A LE
Sbjct: 296 DGVVIKIDDFAQQRELGVVGRDPRWAIAFKFPAREAITRLLDITVNVGRTGVVTPNAELE 355

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV IGG  + NA+LHN DYI             RDIR+GD V+VKRAG+VIP VV  ++ 
Sbjct: 356 PVQIGGVTVRNASLHNADYI-----------AQRDIRIGDYVIVKRAGDVIPYVVGPVIA 404

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    +P+ FP+ CP C S + R+         AA RC     C AQ + R++HFVSR 
Sbjct: 405 RRDGSERPWQFPTHCPACGSPLEREEGE------AAWRCNNFSICPAQLVRRVEHFVSRS 458

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I G+G++Q + F +       IR  ADIF L+  Q         + GFG   + NL 
Sbjct: 459 ALDIVGMGERQAELFVQR----GLIRDVADIFFLKADQLA------ELEGFGPKRIANLL 508

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I+  R   L+R +  LGIR+VG   A++L     S        + I+A   ++     
Sbjct: 509 AAIDAARQRPLDRLLVGLGIRYVGTVAAQTLVAALGSL-------DAIMAARQEELE--- 558

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTL 658
           ++P +G ++A +IV+F+  P N   +E L        G       S  +  K  V TGTL
Sbjct: 559 QIPGIGPVVAASIVDFFSRPANRALIEKLRAAGVQMGGVSGPTRQSDTLAGKTFVLTGTL 618

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A   +   G  V+  +S+KT  ++ G N GSKL KA QLG+ +++E   L L+
Sbjct: 619 PSLSREQASALIVAHGGKVTDSVSKKTSYVVAGANAGSKLAKALQLGIPVIDEAGLLALI 678


>gi|198243638|ref|YP_002216496.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|254781408|sp|B5FQB9|DNLJ_SALDC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197938154|gb|ACH75487.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326624250|gb|EGE30595.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 671

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLV 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|238785571|ref|ZP_04629551.1| DNA ligase [Yersinia bercovieri ATCC 43970]
 gi|238713506|gb|EEQ05538.1| DNA ligase [Yersinia bercovieri ATCC 43970]
          Length = 670

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/712 (34%), Positives = 405/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  S   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLESQHPELITS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   ++ +   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRTE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+N V+       ++++Y +++  R+ L +DIDG+V KVD+  
Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVQLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L   + T   ++      G  S  NL  ++ + +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFELTAGKLTGLDRM------GPKSAQNLIVALERAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D   L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNMANLRAA----------DIDELKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +EAL K +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLGEEHNQRVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +SRKTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSRKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670


>gi|283832193|ref|ZP_06351934.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
 gi|291071830|gb|EFE09939.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
          Length = 671

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D EYD L  +   +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDLLMHKLQWLEALHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  D   + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTD--KLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGAL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   +++YY++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PQHCPVCNSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+FTL   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFTLTAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ +            A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLD----------ALEAASIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L  + R  A+
Sbjct: 559 HVFNFFAEESNREVIGQLLAQGIHWPAPVVINAEEIDSPFAGKTVVLTGSLSLMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +T+LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|320173862|gb|EFW49042.1| DNA ligase [Shigella dysenteriae CDC 74-1112]
          Length = 671

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +     +L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHLELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ +          + A        L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGT----------LKALEAASIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|295401729|ref|ZP_06811695.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294976216|gb|EFG51828.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 670

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/715 (35%), Positives = 391/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A K +  L + ++ ++  YY   +P + DSEYD L +   A+   +PDL      
Sbjct: 1   MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTK--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+   +  KV H  P LSL   +N  DLR F  R+ +       + + +  E
Sbjct: 58  DSPSQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVRQEVG----DDVAYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L LN P  +E RGE 
Sbjct: 114 LKIDGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLP--LRLNEPVTLEARGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN++    G + +ANPRNAA+G LR+L+P     R+L+ FV+GL    E+ 
Sbjct: 172 YMPKASFERLNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L  ++ LGF  N   R+      ++ + NE +  R  LPY+IDG+V KVD F+
Sbjct: 232 IASHSAALDYLQQLGFKTNPERRRCANMDEVMQFVNEWQEKRPQLPYEIDGIVIKVDSFA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++  T+L+DI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQEQLGATAKSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV+++ + R  +  PF  
Sbjct: 352 ATLHNEDFIR-----------EKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR A NIEGLG++ 
Sbjct: 401 PTHCPECASELVRIEGE------VALRCINP-KCPAQIREGLIHFVSRQAMNIEGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       I   ADI+ L + Q     ++      G+ S TNL  +I   +  SL
Sbjct: 454 ISQLFRE----GLIHDVADIYRLTKDQLIDLERM------GEKSATNLLHAIEASKQNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A+ LA+++ +           +          + +  +G+ +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKVLAEHFETMDRLQNATKEEL----------MAIHEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++  P     +  L         +        +V S    K +V TG L+ + R++
Sbjct: 554 SIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTVVLTGKLESLSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E + QLG  V+  +S+ TD++I G + GSKL KAQQL ++I +E +FL  ++Q
Sbjct: 614 AKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDETRFLEEIEQ 668


>gi|212638096|ref|YP_002314616.1| NAD-dependent DNA ligase LigA [Anoxybacillus flavithermus WK1]
 gi|254781544|sp|B7GFV1|DNLJ_ANOFW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212559576|gb|ACJ32631.1| NAD-dependent DNA ligase [Anoxybacillus flavithermus WK1]
          Length = 672

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/709 (35%), Positives = 395/709 (55%), Gaps = 52/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              K+++ L ++I  H+  YY   +P I D+EYD L R+   +   +P     + P+ P 
Sbjct: 8   DVEKQIAELREQIEKHNYAYYVLDQPSISDAEYDELMRKLMELEEQYPQY---KTPDSPS 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG    +  KVTH +P LSL   +N  DLR F  R+      ++   + +  E KID
Sbjct: 65  QRVGGAPLEAFRKVTHRVPMLSLSNAFNEGDLRDFDRRVR-----QEVGDVRYVCELKID 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++RYE G FV  A RGDG +GED++  ++ I ++P  L   +   IEVRGE Y+ +
Sbjct: 120 GLAVSLRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLRQQV--TIEVRGEAYMPR 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN++    G + +ANPRNAA+G LR+L+P     R L+ F + +    E+     
Sbjct: 178 KSFEKLNEKRKMNGEELFANPRNAAAGSLRQLDPKVAASRQLDIFAYHVVNAEELGILSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
              L  +  LGF  N   +   T   ++SY  +    R++LPYDIDG+V KVD F+ QKQ
Sbjct: 238 SAALNYLDELGFKTNPARQVCETIDDVLSYIEQWHERRASLPYDIDGIVIKVDAFAQQKQ 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++  T+L+DI++ +GRTG++TP A L+PV + G ++  A+LH
Sbjct: 298 LGATAKSPRWAIAYKFPAEEVVTQLVDIELSVGRTGVVTPTAILQPVRVAGTIVQRASLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NEDYI+            +DIR+GD V++K+AG++IP+VV  +   R    +PF  P+ C
Sbjct: 358 NEDYIR-----------EKDIRLGDYVVIKKAGDIIPEVVCSLPERRTGKEEPFDMPTHC 406

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S +VR  +        A RC     C AQ  E L HFVSR A NI+GLG++ +   
Sbjct: 407 PACASELVRLDDE------VALRCVNP-QCPAQIREGLIHFVSRQAMNIDGLGEKVIAQL 459

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+       +R  AD++TL + +  +  ++      G+ S TNL  +I   +  SLER +
Sbjct: 460 FEHR----LVRSVADLYTLTKDELVALERM------GEKSATNLLQAIEASKQNSLERLL 509

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRHVGA+ A++LA+++ + +   Q     +          + +  +G+ +A +IV 
Sbjct: 510 FGLGIRHVGAKAAKTLAEHFETMERLQQATKEEL----------MAIHEIGEKMADSIVT 559

Query: 615 FYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++        +E L            +   ++SS    K  V TGTLQ + R +A+E + 
Sbjct: 560 YFSKEEVKQLLERLRAYGVNMTYKGAKQTIDISSTFAGKTFVLTGTLQSMSRSEAKEKIE 619

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LG  V+  +S+KTD+++VG++ GSKLEKA+QLG+ I +E +FL  +QQ
Sbjct: 620 TLGGKVTGSVSKKTDVVVVGEDAGSKLEKAKQLGITIWDEARFLQEIQQ 668


>gi|29140957|ref|NP_804299.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213160907|ref|ZP_03346617.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424270|ref|ZP_03357114.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213583650|ref|ZP_03365476.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213650852|ref|ZP_03380905.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|29136582|gb|AAO68148.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 671

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|312112463|ref|YP_003990779.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
 gi|311217564|gb|ADP76168.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
          Length = 670

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/715 (35%), Positives = 391/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A K +  L + ++ ++  YY   +P + DSEYD L +   A+   +PDL      
Sbjct: 1   MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTK--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+   +  KV H  P LSL   +N  DLR F  R+ +       + + +  E
Sbjct: 58  DSPSQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVRQEVG----DDVAYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L LN P  +E RGE 
Sbjct: 114 LKIDGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLP--LRLNEPVTLEARGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN++    G + +ANPRNAA+G LR+L+P     R+L+ FV+GL    E+ 
Sbjct: 172 YMPKASFERLNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L  ++ LGF  N   R+      ++ + NE +  R  LPY+IDG+V KVD F+
Sbjct: 232 IASHSAALDYLQQLGFKTNPERRRCANMDEVIQFVNEWQEKRPQLPYEIDGIVIKVDSFA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++  T+L+DI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQEQLGATAKSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV+++ + R  +  PF  
Sbjct: 352 ATLHNEDFIR-----------EKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR A NIEGLG++ 
Sbjct: 401 PTHCPECASELVRIEGE------VALRCINP-KCPAQIREGLIHFVSRQAMNIEGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       I   ADI+ L + Q     ++      G+ S TNL  +I   +  SL
Sbjct: 454 ISQLFRE----GLIHDVADIYRLTKDQLIDLERM------GEKSATNLLHAIEASKQNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A+ LA+++ +           +          + +  +G+ +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKVLAEHFETMDRLQNATKEEL----------MAIHEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++  P     +  L         +        +V S    K +V TG L+ + R++
Sbjct: 554 SIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTVVLTGKLESLSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E + QLG  V+  +S+ TD++I G + GSKL KAQQL ++I +E +FL  ++Q
Sbjct: 614 AKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDETRFLEEIEQ 668


>gi|206579402|ref|YP_002237241.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342]
 gi|288934177|ref|YP_003438236.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
 gi|254781350|sp|B5XVT4|DNLJ_KLEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206568460|gb|ACI10236.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342]
 gi|288888906|gb|ADC57224.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
          Length = 671

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/713 (34%), Positives = 399/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDD--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  + AA RGDG +GED+++ +R I TIP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  LQ+ +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  +
Sbjct: 236 PASHSARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLSAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ + +   Q               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAALAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +    A        +    + + S    K +V TG+L ++ R  A+
Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|307248328|ref|ZP_07530352.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306855149|gb|EFM87328.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 682

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/707 (36%), Positives = 404/707 (57%), Gaps = 46/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP  L+  N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254
           F ALN+  +  G K +ANPRNAA+G LR+L+P     R L    +G+G  ++ +      
Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L         ++      G+ S  N  +SI K +N +L RF+
Sbjct: 475 MECE----LVHTPADLFKLDHTTLMRLERM------GEKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ + +        +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVAVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  +
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGE 681


>gi|157371681|ref|YP_001479670.1| NAD-dependent DNA ligase LigA [Serratia proteamaculans 568]
 gi|190359284|sp|A8GHF2|DNLJ_SERP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157323445|gb|ABV42542.1| DNA ligase, NAD-dependent [Serratia proteamaculans 568]
          Length = 673

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/713 (33%), Positives = 395/713 (55%), Gaps = 50/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P + D+EYD L     A+  A P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMGELRALESAHPELITA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R+    +  D   + F  E K
Sbjct: 58  PTQRVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSD--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE++++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E      K +ANPRNAA+G +R+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  ++ L + +  G PV++  ++      ++++Y +++  R+ L +DIDG+V K+D+  
Sbjct: 236 PRSHWQRLMQFKDWGLPVSDRAKRCTGSDEVLAFYRQVEQDRTQLGFDIDGVVVKIDDID 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQETLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVLVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +I   R  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVIAERRPADAREILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PQHCPVCGSDVERVEGE------AVARCTGGLICAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + E     ++ PAD+F L     T   ++      G  S  NL +++ K +  + 
Sbjct: 459 IEQLVEKE----YVKNPADLFRLSAGILTGLDRM------GPKSAQNLVNALEKSKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +                 D  +L  VP VG+I+A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGTLDKLLAA----------DIEALKEVPEVGEIVAK 558

Query: 611 AIVEFYQNPRNICAV-----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
               F     N   +     + +       +    + + S    K +V TG+L ++ R +
Sbjct: 559 HTRHFLDEELNQQVIQELVSDEIGINWPAPVVIVAEEIDSPFAGKTVVLTGSLSQLSRDE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEAEMIRLL 671


>gi|240948595|ref|ZP_04752968.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
 gi|240297103|gb|EER47674.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
          Length = 679

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/704 (37%), Positives = 403/704 (57%), Gaps = 46/704 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L  ++  ++  Y+    P++ D+EYD L      +    P+L     P+ P  ++G
Sbjct: 15  EIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELI---TPDSPTQRVG 71

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH +P LSL+  ++ EDL  F+ R+  +      +S+ F  EPK+DG  +
Sbjct: 72  AKPLDGFSQVTHELPMLSLDNAFSDEDLDGFLRRMESYISVTP-SSLDFCCEPKLDGLAV 130

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED++A IR I  IP  L   N P  +EVRGEV++ +  F
Sbjct: 131 SILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLRLKTDNPPLRLEVRGEVFMPQKGF 190

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG--KTSEIFAKGQY 255
            ALN + +  G K +ANPRNAA+G LR+L+P     R L    + +G   + +      +
Sbjct: 191 EALNQKALEKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPNTHF 250

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ ++ LG PVNN +R       ++ +Y ++++ R TL YDIDG V KV++ +LQ+QL
Sbjct: 251 ERLQWLKSLGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQL 310

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLHN
Sbjct: 311 GFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 370

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L            I +GD V+++RAG+VIP+++ I+   R  +A+  +FP+ CP
Sbjct: 371 GDEIERL-----------GIAIGDTVIIRRAGDVIPQIIGIVAERRPENAKKITFPTACP 419

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           IC S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++   
Sbjct: 420 ICGSAVVRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLM 473

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + E     +  PAD+F L +       ++      G+ S  N  +SI K +N +L RF+F
Sbjct: 474 ERE----LVHTPADLFKLDQVTLMRLERM------GEKSAQNALNSIEKAKNTTLPRFLF 523

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A +LA ++ S +          A     +  L  V  VG+++A  IV F
Sbjct: 524 ALGIRDVGEATALNLANHFGSLE----------AIRTATFEQLQEVQDVGEVVANRIVRF 573

Query: 616 YQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +Q P N+  VE L+++ V        +   + +++K +V TGTL  + R +A+  +  LG
Sbjct: 574 WQEPHNVEVVEDLIQQGVVWQNIEQVEIADNPLKDKNVVLTGTLSVLTRDQAKALLQGLG 633

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             VS  +S KTD +I G+  GSKL KAQ+LGVK+++E+ FL ++
Sbjct: 634 CKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFLEIV 677


>gi|290508381|ref|ZP_06547752.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
 gi|289777775|gb|EFD85772.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
          Length = 671

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/713 (34%), Positives = 399/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDD--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  + AA RGDG +GED+++ +R I TIP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  LQ+ +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  +
Sbjct: 236 PASHSARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQITFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLSAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ + +   Q               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAALAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +    A        +    + + S    K +V TG+L ++ R  A+
Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|16761347|ref|NP_456964.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|81513487|sp|Q8Z4W4|DNLJ_SALTI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|25294013|pir||AI0809 DNA ligase (NAD) (EC 6.5.1.2) - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16503646|emb|CAD07659.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 671

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQTGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|121533514|ref|ZP_01665342.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
 gi|121308073|gb|EAX48987.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
          Length = 673

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/709 (36%), Positives = 384/709 (54%), Gaps = 46/709 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++EQA +E   L ++I YH+  YY    P I D+E+DAL RR  AI  A+P L     P+
Sbjct: 8   TLEQAAREAEQLRRQIHYHNHRYYVLDAPEISDAEFDALMRRLIAIEEAYPSLI---TPD 64

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       +  H  P LSL   ++ EDLR F  R+         +   + +E 
Sbjct: 65  SPTQRVGGAPAEGFDRTLHLTPMLSLANAFSAEDLRAFDNRVRSGLG---VDKAEYVVEL 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191
           KIDG  + + YE G+ V  A RGDG  GEDV+A +R I ++P VL +N  P ++EVRGEV
Sbjct: 122 KIDGLAVNLVYEAGRLVRGATRGDGQYGEDVTANVRTIRSVPLVLPVNDPPALLEVRGEV 181

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ + +F  LN+E  A G   +ANPRNAA+G LR+L+P     R L+ FV+  G+   + 
Sbjct: 182 YMPRREFDRLNEERQAAGEALFANPRNAAAGSLRQLDPRVTAQRALDIFVYATGRREGLN 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L+ +  LGF VN   R   +   ++ Y       R  LPYDIDGLV K++  +
Sbjct: 242 METHAQTLETLAALGFKVNPHYRVFGSIEEVIDYCYSWNERRVDLPYDIDGLVIKLNSLA 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+ PRW I+ KF  +QA+T + DI +++GRTG+LTP A+L PV + G+ ++ 
Sbjct: 302 GQARLGATAKDPRWAIAFKFPAEQATTIVEDIFVRVGRTGVLTPTAQLRPVRLAGSTVSR 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI+            +DIR+GD V++ +AGEVIP+VV ++ + R+   +PF  
Sbjct: 362 ATLHNEDYIRD-----------KDIRIGDTVIIHKAGEVIPEVVAVVASRRNGSERPFVM 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S VVR+         AAH+C    AC A   E L HFVSRDA NIEGLG   
Sbjct: 411 PDRCPECGSPVVREPGE------AAHKCVNS-ACPAMLREGLIHFVSRDAMNIEGLGPAV 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +         A  +R  AD++ L+    T   ++      G  S  NL  +I   +   L
Sbjct: 464 IGSLLD----AGLVRDAADLYALRFDDLTKLDRM------GPKSAQNLLQAIEASKEAGL 513

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F+LGIR VGA+ A +LA+++ S     +               L+ +  +G  IA+
Sbjct: 514 ARLLFALGIRFVGAKAAGTLARHFGSIHALERAT----------VEELMALEEIGPKIAE 563

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  ++ +P+NI  V  L                  +     V TGTL  + R +A E +
Sbjct: 564 SVANYFADPQNIALVRKLEAAGVKVTEERPAAKRQTLAGITFVLTGTLATMTRAEATELI 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  VS+ +S+KT+ ++ G+  GSKL+KA++LG+ ++ E +F  LL+
Sbjct: 624 ESRGGKVSSSVSKKTNYVVAGEEAGSKLDKARELGIPVLTEGEFKKLLE 672


>gi|303250616|ref|ZP_07336813.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252937|ref|ZP_07534825.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|302650604|gb|EFL80763.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859575|gb|EFM91600.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 682

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/707 (36%), Positives = 405/707 (57%), Gaps = 46/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP  L+  N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254
           F ALN+  +  G K +ANPRNAA+G LR+L+P     R L    +G+G  ++ +      
Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+        ++      G+ S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKLEHTTLMRLERM------GEKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ + +        +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  +
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIALTGE 681


>gi|294635487|ref|ZP_06713972.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
 gi|291091145|gb|EFE23706.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
          Length = 675

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/715 (35%), Positives = 402/715 (56%), Gaps = 55/715 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             ++L  L   + +H+  YY   +P + D+EYD L  +  A+   +P L  +   + P  
Sbjct: 5   IEQQLEQLRAALRHHEYQYYVLDEPQVTDAEYDRLMMQLKALESDYPQLVTA---DSPSQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL+ +++ E  R F  R++   +   D ++ F  E K+DG
Sbjct: 62  RVGGAPLAAFGQVHHEVPMLSLDNVFDEESYRAFDKRLHERLKS--DAALTFCCELKLDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             +++ YE+G  V AA RGDG +GED+++ ++ I  IP  L   +IP+ IEVRGEV++ +
Sbjct: 120 LAVSLLYEQGVLVRAATRGDGSTGEDITSNVKTIRAIPLRLQGEDIPDRIEVRGEVFMPQ 179

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSE-IFAKG 253
             F A+N+E    G K +ANPRNAA+G LR+L+P    R  L F+ +G G          
Sbjct: 180 AGFEAMNEEARRRGGKIFANPRNAAAGSLRQLDPRITARRPLTFYCYGAGLLEGGTLPGS 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+ LQ+ +  G PV+  V++ +    +++YY + +  R TL +DIDG+V KVD+ + Q+
Sbjct: 240 HYQCLQRFKSWGLPVSERVKRCHGSDEVLAYYRQTEQDRPTLGFDIDGVVIKVDDIATQE 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  AR+PRW  + KF  ++  T+L  ++ Q+GRTG +TPVARLEPV + G  ++NATL
Sbjct: 300 ALGFVARAPRWATAFKFPAQEQMTQLNGVEFQVGRTGAITPVARLEPVQVAGVTVSNATL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            +R+GD V+V+RAG+VIP+VV ++ ++R  DA    FP+ 
Sbjct: 360 HNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVESQRPADATEILFPTH 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V R          A  RC+GGL C+AQ+ E LKHFVSR A ++EG+G + ++ 
Sbjct: 409 CPVCGSEVERIEGE------AVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQ 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + E     +  PAD++ L   + T   ++      G  S   L  ++++ R+ +L RF
Sbjct: 463 LVERE----YVTTPADLYRLSAGKLTGLERM------GPKSANKLIAALDRSRSTTLARF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG   A +LA ++ S            A    D  SL  VP VG+++A+ I 
Sbjct: 513 LFALGIREVGEATAANLASHFGSLS----------ALRGADLESLKSVPEVGEVVARHIR 562

Query: 614 EFYQNPRNICAVEA--------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            F     N   ++            +V+P++   E  + S    K +V TG+L  + R +
Sbjct: 563 HFLSEAHNCQVIDELISAEIGIHWPDVTPALQAAE--IDSPFAGKTVVLTGSLSVLSRDE 620

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LGA VS  +S+KTD++I G+  GSKL KA  LG+ +++E Q L +L +
Sbjct: 621 AKDRLVALGAKVSGSVSKKTDLVIAGEAAGSKLVKANTLGITVIDEAQLLQMLGE 675


>gi|304398312|ref|ZP_07380186.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
 gi|304354178|gb|EFM18551.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
          Length = 672

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/712 (34%), Positives = 392/712 (55%), Gaps = 49/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   + +H+  Y+    P + D+EYD L R    +    PDL     P+ 
Sbjct: 1   MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H +P LSL+  ++      F  R+    +  +D  I +  E K
Sbjct: 58  PTQRVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKNSED--ITYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++A +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGAAVSLMYENGLLVQAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           +++  F  LN+E      K +ANPRNAA+G LR+L+P     R L FF +G G       
Sbjct: 176 MTQRGFEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  LQ+ +  G PV++ +++ +     +++Y E++  R  L +DIDG+V KVD  +
Sbjct: 236 PHSHMARLQQFKAWGLPVSDRIKRVHNAEEALAFYREIEQQRPNLGFDIDGVVIKVDSQA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GDRV+++RAG+VIP+VV++++ ER  + +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          +  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PAHCPVCGSEVERVEGE------SVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ D++ K ++ +L
Sbjct: 459 IDQLVEKE----YVSTPADLFRLTAGKLTGLDRM------GPKSAQNVVDALEKAKSTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++   Q               D  +LI VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLEALIAVPDVGKVVAT 558

Query: 611 AIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F +   N   +    E +       +    + + S    K +V TG+L ++ R  A
Sbjct: 559 HVRNFMEEESNREVIRQLTEEIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 619 KAQLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670


>gi|261345310|ref|ZP_05972954.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
 gi|282566645|gb|EFB72180.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
          Length = 678

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/726 (33%), Positives = 401/726 (55%), Gaps = 56/726 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M  +Q  P +AL     ++++ SL+Q++ +H+  Y+    P I D EYD L +    +  
Sbjct: 1   MTTKQ--PQDAL-----KQKIDSLKQQLRHHEYLYHVLDAPEIPDVEYDKLMQELKGLEA 53

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L  +   + P  ++G     +   V H +P LSL+ +++ E    F  R+      
Sbjct: 54  ENPELITT---DSPTQRVGAAPLTAFGTVRHEVPMLSLDNVFDEESYLAFDKRVKDRLN- 109

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
            +   + F  E K+DG  +++ YE G+ V AA RGDG  GE+++  +R I  IP  L   
Sbjct: 110 -NHTELTFCCELKLDGLAVSLLYENGELVQAATRGDGSVGENITVNVRTIKAIPLRLRGD 168

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           NIP  +E+RGEV++ +  F A+N+E      K +ANPRNAA+G LR+L+P     R L F
Sbjct: 169 NIPARVEIRGEVFMPQKGFEAMNEEARRTDGKIFANPRNAAAGSLRQLDPRITAKRPLTF 228

Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           + +G+G           YE L + +  G PV+  V+       ++ +Y+ ++ IR TL +
Sbjct: 229 YCYGVGLVEGNTLPDTHYERLMQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGF 288

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V KV++ + Q++LG  +R+PRW  + KF  ++  T L D++ Q+GRTG +TPVAR
Sbjct: 289 DIDGVVIKVNDIATQEKLGFVSRAPRWATAFKFPAQEQLTLLKDVEFQVGRTGAITPVAR 348

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV + G +++NATLHN D I+ L            +R+GD V+++RAG+VIP++V ++
Sbjct: 349 LEPVQVAGVVVSNATLHNADEIERL-----------GVRIGDTVVIRRAGDVIPQIVSVV 397

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           +++R  D++  +FP+ CP+C S + R          A  RCTGGL C AQ  E LKHFVS
Sbjct: 398 MDKRPADSREITFPTQCPVCHSDIERVEGE------AVARCTGGLTCGAQLKESLKHFVS 451

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A +++G+G + ++    +E     ++  A ++ L   + T   ++      G  S   
Sbjct: 452 RRAMDVDGMGDKIIEQLVDAE----YVKNAAQLYQLSAGKLTGLERM------GPKSAQK 501

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L D++ K +  +L RFI++LGIR VG   A +LA +Y S            A    D  S
Sbjct: 502 LIDALEKSKQTTLARFIYALGIREVGEATAANLASHYASLD----------AVMAADEES 551

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLV 653
           L  V  +G+++A+ +V F+    N   +  LL   +      +      + S    K +V
Sbjct: 552 LKAVQDIGEVVAKHVVNFFHEEHNRQVIHDLLTIANIHWPEVKVVNSDEIDSPFAGKTVV 611

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG++ ++ R +A++ +  LGA V+  +S+KTD++I G+  GSKL KA +LGVK+++E++
Sbjct: 612 LTGSMSRLTRDEAKDQLVALGAKVAGSVSKKTDMVIAGEAAGSKLAKAIELGVKVIDEDE 671

Query: 714 FLFLLQ 719
            + LL 
Sbjct: 672 LVRLLN 677


>gi|209884394|ref|YP_002288251.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5]
 gi|254781382|sp|B6JB45|DNLJ_OLICO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|209872590|gb|ACI92386.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5]
          Length = 706

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/726 (42%), Positives = 445/726 (61%), Gaps = 33/726 (4%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
            K+ L  ++ L+  QA+ E   L  EI+ HD+ YYQ   P + D+ YD+L++R +A+   
Sbjct: 5   SKKPLPSVDQLTKAQAKVEHKRLALEIAMHDERYYQKDAPTVSDAAYDSLRQRLNAVEAR 64

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L  +   + P  K+G + + +  K+ H++P LSL   ++ E++ +F+ R+ RF    
Sbjct: 65  FPELVTT---DSPSQKVGAQPSRAFAKIRHAVPMLSLGNAFSDEEVAEFVARVRRFLNLG 121

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180
            D  +    EPKIDG  +++RYE G+ V AA RGDG  GEDV+A +R I  +P  L   N
Sbjct: 122 ADEPLAVVAEPKIDGLSLSLRYENGELVNAATRGDGFEGEDVTANVRTIKDVPHKLKGKN 181

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239
           IP + EVRGEVY+ + DFL LN +    G   +ANPRN+A+G LR+ N     +R L FF
Sbjct: 182 IPAVCEVRGEVYMLREDFLTLNKKQADSGDTIFANPRNSAAGSLRQKNVAITASRPLKFF 241

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ S + A  Q+EM++     GF VN  +        ++ YY E+++ R+ L YDI
Sbjct: 242 AYAWGEMSAMPATTQFEMVKWFEKAGFAVNPRMILCRDVEALLRYYREIETERAQLSYDI 301

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q +LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG LTPVARL 
Sbjct: 302 DGVVYKVDRLDWQTRLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLA 361

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
            V +GG ++ NATLHNED I             +DIR GD V+++RAG+VIP+VV ++ +
Sbjct: 362 AVTVGGVVVQNATLHNEDEIAR-----------KDIREGDTVVIQRAGDVIPQVVSVVTD 410

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   A+P+SFP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFVSR 
Sbjct: 411 KRPKHAKPYSFPHVCPVCGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 464

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLG +Q+  F+ ++     I  P DIFTL +R   +T K+++  G+GDVSV NL+
Sbjct: 465 AFDIEGLGDKQIHEFYDAK----LIMHPVDIFTLAKRDAHATDKLKDREGYGDVSVRNLF 520

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----- 594
            +I+ RR I L R IF+LGIRHVG   A+ LA++Y + +NF   +    A   ++     
Sbjct: 521 AAIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGTIENFRAAMAEAAAAQTEEGNPSE 580

Query: 595 -WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
            +  L  +  VGDI+A A+VEF+   RN+ A+  LL E+   +   +    S +  K +V
Sbjct: 581 AYADLNAIGGVGDIVADAVVEFFAEERNVKALNELLHEIEV-LPAEQVRADSAVAGKTVV 639

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTG+L K  R +A+    +LGA VS  +S+KTD ++ G+  GSKL KA++LGV ++ E++
Sbjct: 640 FTGSLTKFTREEAKAQAERLGAKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDE 699

Query: 714 FLFLLQ 719
           +L L++
Sbjct: 700 WLKLIE 705


>gi|212710592|ref|ZP_03318720.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
           30120]
 gi|212686673|gb|EEB46201.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
           30120]
          Length = 678

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/714 (33%), Positives = 394/714 (55%), Gaps = 49/714 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + +   +++ +L+Q++ +H+  Y+    P I D EYD L +   A+    P+L  +   +
Sbjct: 6   NPDALTQKIDALKQQLRHHEYLYHVMDAPEIPDVEYDKLMQELKALEAEHPELITT---D 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G     +   V H IP LSL+ +++ E    F  R+       +   + F  E 
Sbjct: 63  SPTQRVGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVKDRL--HNHTELTFCCEL 120

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           K+DG  +++ YE G+ V AA RGDG  GE+++A +R I  IP  L   NIP  +E+RGEV
Sbjct: 121 KLDGLAVSLLYENGELVQAATRGDGTVGENITANVRTIKAIPLRLRGDNIPARVEIRGEV 180

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-I 249
           ++ +  F A+N+E      K +ANPRNAA+G LR+L+P     R L F+ +G+G      
Sbjct: 181 FMPQKGFEAMNEEARKTDGKIFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGKT 240

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                YE L + +  G PV+  V+       ++ +Y+ ++ IR TL +DIDG+V KV++ 
Sbjct: 241 LPDTHYERLMQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGFDIDGVVIKVNDI 300

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++Q++LG  +R+PRW  + KF  ++  T L D++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 301 AIQEELGFVSRAPRWATAFKFPAQEQITLLKDVEFQVGRTGAITPVARLEPVQVAGVVVS 360

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            +R+GD V+++RAG+VIP++V +++++R  D++   
Sbjct: 361 NATLHNADEIDRL-----------GVRIGDTVVIRRAGDVIPQIVSVVMDKRPADSREII 409

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S + R          A  RCTGGL C AQ  E LKHFVSR A +++G+G +
Sbjct: 410 FPTHCPVCNSDIERVEGE------AVARCTGGLTCGAQLKESLKHFVSRRAMDVDGMGDK 463

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++    +E     +   A ++ L   + T   ++      G  S   L D++ K +  +
Sbjct: 464 IIEQLVDAE----YVANAAQLYQLSAGKLTGLERM------GPKSAQKLIDALEKSKQTT 513

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI++LGIR VG   A +LA +Y S            A    D  SL  V  +G+++A
Sbjct: 514 LARFIYALGIREVGEATAANLAAHYASLD----------AVMAADEDSLKTVQDIGEVVA 563

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHK 665
           + +V F++   N   +  LL   +      +      + S    K +V TG++  + R  
Sbjct: 564 KHVVHFFREEHNRQVIHDLLTIANIHWPEVKVINSAEIDSPFAGKTVVLTGSMSTLSRDD 623

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A++ +  LGA V+  +S+KTD++I G+  GSKL KA +LG+K+++EE+ + LL 
Sbjct: 624 AKDKLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKATELGIKVIDEEELIRLLN 677


>gi|315122567|ref|YP_004063056.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495969|gb|ADR52568.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 739

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/725 (66%), Positives = 583/725 (80%), Gaps = 5/725 (0%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M  R+ IPIE LS EQA+KELS L+ EISYHDD YYQ+S+P ILD EYD LK RCDAIA 
Sbjct: 1   MANRKFIPIEELSPEQAKKELSFLQHEISYHDDLYYQHSQPKILDFEYDQLKERCDAIAR 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFP+ A   D NGPLNKIGGE N SLFK+THS P  SLEK   IED+  F+T+IYR  +K
Sbjct: 61  AFPEFASLADSNGPLNKIGGEKNFSLFKITHSPPMRSLEKSHQIEDINYFMTKIYRDLKK 120

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
              NSI FTLEPKIDG  ++IRYE+GKFV+A LRGDG+ GEDVSA I  +  IP+VLS  
Sbjct: 121 DCYNSIVFTLEPKIDGASLSIRYEQGKFVHAGLRGDGYIGEDVSANISMMSIIPQVLSFK 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR---RLNPTDITRYLN 237
           +PEI EVRGE+YISK DF  LN+EM    +K Y+NPRN  +G+LR   + + + I+RYL 
Sbjct: 181 VPEIFEVRGEIYISKKDFFVLNEEMRTTKKKLYSNPRNTVAGLLRSRNQTSKSRISRYLK 240

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           FFVHG+G  SE FA GQYEMLQKMR LGFPVN  ++QA+T  GIVSYY+E   IRS+LPY
Sbjct: 241 FFVHGIGTISEKFADGQYEMLQKMRALGFPVNERIQQAHTLEGIVSYYDETALIRSSLPY 300

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKVD F+LQ+QLGER+RSP W ISHKF++++ ST LL IDIQIGRTG+LTP+AR
Sbjct: 301 DIDGIVYKVDSFTLQQQLGERSRSPIWAISHKFSDEEFSTPLLGIDIQIGRTGMLTPIAR 360

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
            E +N+GG  ++NATLHNE+YIKGLD+SGK++RGGRDIR+GD +LVKRAG+VIPKV D+I
Sbjct: 361 FESINMGGVFVSNATLHNENYIKGLDSSGKIIRGGRDIRIGDMILVKRAGDVIPKVTDVI 420

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + ER  D+Q FSFPS CP+CQS+VVR +NPKTGKL ++H CTGGL C AQQLE LK+FVS
Sbjct: 421 MEERPIDSQMFSFPSSCPVCQSKVVRAVNPKTGKLGSSHYCTGGLMCPAQQLEYLKYFVS 480

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           RDAFNIEGLG++QLDFFFKSEDP+FSIRIPADIFTLQ RQQTS  K+ENI GF  VSVTN
Sbjct: 481 RDAFNIEGLGEKQLDFFFKSEDPSFSIRIPADIFTLQHRQQTSFKKLENIPGFAHVSVTN 540

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           LYDSINKRRNISL+RFIFSLGI HVG EIARSLA++Y SYQNF  EI NI+   ND  +S
Sbjct: 541 LYDSINKRRNISLQRFIFSLGIHHVGIEIARSLAQFYRSYQNFETEIKNILDKKNDADVS 600

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFT 655
           L +V LVGD++AQ+I+ FYQNP N  A+ ALL E+S S+   + + + +S + NK+LVFT
Sbjct: 601 LKKVALVGDMVAQSIIAFYQNPENNRAIAALLNEISLSVWDSQEDNSRNSILANKRLVFT 660

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTLQKI RH+AQE V QLGA+VS+ +S KT I++VGDN GSKL KA+QLG++I+NEEQFL
Sbjct: 661 GTLQKITRHQAQEAVKQLGAIVSSTISHKTHIVVVGDNAGSKLNKARQLGIEIVNEEQFL 720

Query: 716 FLLQQ 720
            L+ +
Sbjct: 721 SLISE 725


>gi|149915267|ref|ZP_01903795.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b]
 gi|149810988|gb|EDM70827.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b]
          Length = 720

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/714 (42%), Positives = 441/714 (61%), Gaps = 16/714 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ LS +QA +EL+ L   ++  D  Y+    PI+ D+ YDAL +R  AI   FPDL R
Sbjct: 17  PVDKLSADQAAQELARLADLVAQADAAYHGQDAPIMSDAAYDALVQRNAAIEARFPDLMR 76

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               + P  ++G   +    KVTH++  LSL   +  +++R+F  RI R+     + ++ 
Sbjct: 77  E---DSPSRRVGFTPSEGFGKVTHAVRMLSLGNAFEDDEIREFDARIRRYLGLSPEAALT 133

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186
           +T EPKIDG  +++RYE+G+ V AA RGDG  GE+V+A  R I  IP  L    +PE++E
Sbjct: 134 YTSEPKIDGLSLSLRYEQGRLVQAATRGDGAEGENVTANARTIADIPHDLGGAGVPELLE 193

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGK 245
           VRGEVY+S  DF ALN        K +ANPRNAA+G LR+L+P    R  L FF +  G 
Sbjct: 194 VRGEVYMSHADFEALNTRQTERSDKTFANPRNAAAGSLRQLDPKITARRPLKFFAYAWGA 253

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE  A  Q E + ++   GF  N      +    +++ Y  ++ +R+ L YDIDG+VYK
Sbjct: 254 HSEPLAPSQMEAIARLAGFGFQTNPLTALCDGPDEMLAQYRRIEQLRAELGYDIDGVVYK 313

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+E +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 314 VNEIALQHRLGYRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLHPVTVGG 373

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI G DA G  +RGG+DIRVGD V V RAG+VIPKV D+ +++R  D+
Sbjct: 374 VVVSNATLHNEDYIAGRDAKGNKIRGGKDIRVGDWVQVYRAGDVIPKVADVDLSKRPEDS 433

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P++FP  CP C S  +R+      +  A  RCTGGL C AQ +E+LKHFVSR AF+IEG
Sbjct: 434 APYTFPKVCPECGSDAIRE------EGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIEG 487

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGDVSVTNLYDSINK 544
           LG +Q++ F         IR PADIFTL+ R      T+++N  G+G+ S  NL+D+I++
Sbjct: 488 LGAKQVEQFHAD----GWIREPADIFTLKDRYGPGCLTQLKNRDGWGEKSAANLFDAIDE 543

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RR I+L R +F+LGIRHVG   +  LA++Y ++  F   ++   A    DW  L+ +  V
Sbjct: 544 RRRIALGRLLFALGIRHVGEAASMMLARFYGTWDEFTAAMDGAAAGEGPDWDRLLGIDGV 603

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++AQ++V  +       +++ L+  +            S +  K +VFTGTL+K+ R 
Sbjct: 604 GKVMAQSLVTTFAQDEERASIDRLVAHLEIERAERPDTDGSPVAGKTVVFTGTLEKMTRA 663

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+     LGA VS  +S KTD++I G   GSK + A+QLGV++++E+ +L L+
Sbjct: 664 EAKARAEALGAKVSGSVSAKTDLVIAGPGAGSKAKAAEQLGVEMIDEDGWLALI 717


>gi|167586849|ref|ZP_02379237.1| DNA ligase, NAD-dependent [Burkholderia ubonensis Bu]
          Length = 691

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/733 (35%), Positives = 394/733 (53%), Gaps = 56/733 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L      I  
Sbjct: 1   MARTQAEPPASQPDARA----AWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQIEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L     P+ P  ++GG +      V H  P LSL   +  ED+  F  RI     K
Sbjct: 57  DHPELV---TPDSPTQRVGGAVAGGFTPVVHDAPMLSLNNGFEDEDIVAFDKRIADALDK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE G FV A+ RGDG +GEDV+  +R I ++P
Sbjct: 114 AVDLAGSVTDPVEYACELKFDGLAISLRYENGVFVQASTRGDGTTGEDVTQNVRTIRSLP 173

Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L   N+P +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+P    
Sbjct: 174 LKLKGRNLPAVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G             +L     LG PVN         +G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGAPMPDTHSALLDWYETLGLPVNRERAVVRGANGLLGFFRKIGEQ 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A T L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTTLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R   A  F  P+ CP+C SR+ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGAVLDRRPDPAPEFVMPTECPVCGSRIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLNPIMDAT------- 559

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                 L+ V  VG I+A++I +F+    N   +E L        P      K     + 
Sbjct: 560 ---VEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQQY 721
           ++E+    LL+ +
Sbjct: 677 LDEDGLHQLLEGH 689


>gi|269138493|ref|YP_003295193.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
 gi|267984153|gb|ACY83982.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
 gi|304558517|gb|ADM41181.1| DNA ligase [Edwardsiella tarda FL6-60]
          Length = 675

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/711 (35%), Positives = 394/711 (55%), Gaps = 51/711 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             ++L  L   + +H+  YY   +P + D+EYD L  +   +    P L  +   + P  
Sbjct: 5   IEQQLEQLRDALRHHEYQYYVLDEPQVTDAEYDRLMAQLKQLEAEHPALVTA---DSPSQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL+ +++ E  + F  R++   +      + F  EPK+DG
Sbjct: 62  RVGGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHERLKS--GEPLTFCCEPKLDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
             +++ YE+G  V AA RGDG +GED++A ++ I  IP  L    IP  IEVRGEV++ +
Sbjct: 120 LAVSLLYEQGMLVRAATRGDGSTGEDITANVKTIRAIPLRLQGVAIPARIEVRGEVFMPQ 179

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKG 253
           + F A+N+E    G K +ANPRNAA+G LR+L+P     R L F+ +G G          
Sbjct: 180 DGFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGSGLLEGGTLPDS 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+ LQ+ +  G PV+  V+       +++YY + +  R  L +DIDG+V KVD+ ++Q+
Sbjct: 240 HYQCLQRFKSWGLPVSERVKLCCGSAEVLAYYRQTEQDRPGLGFDIDGVVIKVDDIAIQE 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW  + KF  ++  TRL  ++ Q+GRTG +TPVARLEPV + G  ++NATL
Sbjct: 300 RLGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVQVAGVTVSNATL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L           D+R+GD V+V+RAG+VIP+VV ++   R  DA    FP+ 
Sbjct: 360 HNADEIERL-----------DLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDALEIGFPTH 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V R          A  RC+GGL C+AQ+ E LKHFVSR A ++EG+G + ++ 
Sbjct: 409 CPVCGSEVERTEGE------AVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQ 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD++ L   + T   ++      G  S T L  ++ + R  +L RF
Sbjct: 463 LVDKE----YVATPADLYRLSAGKLTGLERM------GPKSATKLIAALERSRETTLARF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG   A +LA ++ S Q          A    D  SL RVP VG+++A  IV
Sbjct: 513 LFALGIREVGEATAANLASHFGSLQ----------ALRAADLESLKRVPEVGEVVASHIV 562

Query: 614 EFYQNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            F     N   ++        ++    +  +    + S    K +V TG+L  + R +A+
Sbjct: 563 HFLSEAHNRQVIDELISDEVGIRWPEGAPAQSAPAIDSPFAGKTVVLTGSLSVLSRDEAK 622

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +T LGA VS  +S+KTD++I G+  GSKL KA  LG+++++E Q L +L
Sbjct: 623 DRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKANALGIEVIDEAQMLRML 673


>gi|167581473|ref|ZP_02374347.1| DNA ligase, NAD-dependent [Burkholderia thailandensis TXDOH]
          Length = 691

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/726 (36%), Positives = 399/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  S  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE+      V H  P LSL   ++ +D+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLVGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + +IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G    +        +L     LG PVN          G++ +++ + + R +LPYD
Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C SRV R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S                     L
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIDEL 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E L  +     P      +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 KLLEGH 689


>gi|238919178|ref|YP_002932692.1| NAD-dependent DNA ligase LigA [Edwardsiella ictaluri 93-146]
 gi|238868746|gb|ACR68457.1| DNA ligase, NAD-dependent, putative [Edwardsiella ictaluri 93-146]
          Length = 672

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/711 (36%), Positives = 396/711 (55%), Gaps = 51/711 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             ++L  L   + +H+  YY    P I D+EYD L  +   +    P L      + P  
Sbjct: 2   IEQQLEQLRDALRHHEYQYYVLDDPQITDAEYDRLMMQLKQLEAVHPALVTV---DSPSQ 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL+ +++ E  + F  R++   +   D  + F  EPK+DG
Sbjct: 59  RVGGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHERLKS--DEPLTFCCEPKLDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             +++ YE+G  V AA RGDG +GED+++ ++ I  IP  L    IP  IEVRGEV++ +
Sbjct: 117 LAVSLLYEQGVLVRAATRGDGTTGEDITSNVKTIRAIPLRLQGEAIPARIEVRGEVFMPQ 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKG 253
           + F A+N+E    G K +ANPRNAA+G LR+L+P     R L F+ +G G+         
Sbjct: 177 DGFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGTGQLEGGALPDS 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+ LQ+ +  G PV+  VR       +++YY ++   R TL +DIDG+V KVD+ ++Q+
Sbjct: 237 HYQCLQRFKSWGLPVSERVRLCCGSAEVLAYYRQIGQARPTLGFDIDGVVIKVDDIAIQE 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW  + KF  ++  TRL  ++ Q+GRTG +TPVARLEPV + G  ++NATL
Sbjct: 297 RLGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVLVAGVTVSNATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L           D+R+GD V+V+RAG+VIP+VV ++   R  DA    FP+ 
Sbjct: 357 HNADEIERL-----------DLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDAHEIGFPTH 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V R          A  RC+GGL C+AQ+ E LKHFVSR A ++EG+G + ++ 
Sbjct: 406 CPVCGSEVERTEGE------AVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQ 459

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD++ L   + T   ++      G  S T L  ++++ R  +L RF
Sbjct: 460 LVDKE----YVATPADLYRLSAGKLTGLERM------GPKSATKLIAALDRSRETTLARF 509

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG   A +LA ++ S Q          A    D  SL RVP VG+++A  IV
Sbjct: 510 LFALGIREVGEATAANLASHFGSLQ----------ALRAADLESLKRVPEVGEVVASHIV 559

Query: 614 EFYQNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            F     N   ++        ++    +  +    V S    K +V TG+L  + R +A+
Sbjct: 560 HFLSEEHNRQVIDELISDEVGIRWPEGAPAQSAPAVDSPFAGKTVVLTGSLSVLSRDEAK 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +T LGA VS  +S+KTD++I GD  GSKL KA  LG+++++E Q L +L
Sbjct: 620 DRLTALGARVSGSVSKKTDLVIAGDAAGSKLAKANILGIEVIDEAQMLRML 670


>gi|83647417|ref|YP_435852.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396]
 gi|123767368|sp|Q2SD47|DNLJ_HAHCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83635460|gb|ABC31427.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396]
          Length = 683

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/715 (34%), Positives = 391/715 (54%), Gaps = 43/715 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               ++EL++L + I+ H+  YY    P I D+EYD L RR   I   FP       P+ 
Sbjct: 5   PAAIQEELNTLRETINDHNYRYYTLDDPSIPDAEYDRLMRRLREIEAEFPQTI---TPDS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G         V+H +P LSL+  +  +DL  F  R+    ++ +D  I +  EPK
Sbjct: 62  PTQRVGAAPAEGFETVSHRLPMLSLDNAFEEQDLLDFDRRVRERLKEAEDARIDYCCEPK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  I++ Y  G  V    RGDG +GED++A ++ +  IP  L     P  +EVRGE+Y
Sbjct: 122 LDGIAISLLYRDGYLVRGVTRGDGSAGEDITANVKTVKNIPLKLRGEGYPAELEVRGEIY 181

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + K  F A+N +  A G K + NPRNAA+G LR+L+P     R L    + +G       
Sbjct: 182 LPKAAFDAINKDAAAKGEKTFVNPRNAAAGSLRQLDPRITAKRALEMCCYSVGYFEGELP 241

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q+++L +++  G  +N+ ++ A+     + YY  + S+R  LPY+IDG+V+KV+   L
Sbjct: 242 GTQHDILTQLQQWGLKINSQMKLASGAQECLDYYRHIMSVRDQLPYEIDGVVFKVNRIDL 301

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I+HKF   +  T LL +D Q+GRTG +TPVARL+PV +GG  ++NA
Sbjct: 302 QQELGFVSRAPRWAIAHKFPAHEEMTELLAVDFQVGRTGAVTPVARLKPVFVGGVTVSNA 361

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L           D+ +GD V+++RAG+VIP+VV ++ + R  +A P   P
Sbjct: 362 TLHNMDEIRRL-----------DVHIGDTVIIRRAGDVIPQVVSVVQDRRPENAVPVDRP 410

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S V++          A  RC+GGL CSAQ+ E +KHF SR A +I+GLG + +
Sbjct: 411 EHCPVCGSDVLQLEGE------AVARCSGGLYCSAQRKEAIKHFASRKAMDIDGLGDRLV 464

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   + E     I  PA +++L+        ++      G+ S  NL ++I   +  +  
Sbjct: 465 ELLVEKE----LIDSPASLYSLKAPDVAGLERM------GEKSAQNLINAIEASKQTTFA 514

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIR VG   A+ LA+++ +     Q     +          +  P +G I A  
Sbjct: 515 RFIYALGIREVGEATAKVLAQHFPTLDLLKQATEEDL----------VEAPDIGPISAGH 564

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYV 670
           I  F+Q   N+  ++ALL +         ++  +  +  +  V TG L    R +A++ +
Sbjct: 565 IRSFFQQEHNLETIDALLNQGVSWPEVVVRSTETLPLSGQTAVVTGVLADYSRDEAKDLL 624

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           T+LGA VS  +S KT  ++ G+  GSKL KAQ LGVK+++E+ F  LL+++   L
Sbjct: 625 TRLGAKVSGSVSAKTGFVVAGEKAGSKLTKAQDLGVKVLDEDAFKQLLEEHQAHL 679


>gi|52425821|ref|YP_088958.1| NAD-dependent DNA ligase LigA [Mannheimia succiniciproducens
           MBEL55E]
 gi|81386743|sp|Q65RN7|DNLJ_MANSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52307873|gb|AAU38373.1| Lig protein [Mannheimia succiniciproducens MBEL55E]
          Length = 675

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/715 (35%), Positives = 396/715 (55%), Gaps = 45/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L   + YH+  Y+    P I D+EYD L  +  A+    P+L  +   
Sbjct: 1   MTIMDINQQIKQLRDTLRYHEYQYHVLDDPKIPDAEYDRLFHQLKALEQQHPELITA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +      ++TH +P LSL+  ++ E+   F+ RI           + F  E
Sbjct: 58  DSPTQRVGAKPLAGFAQITHELPMLSLDNAFSDEEFNAFVKRIQDRLIVLP-QPLTFCCE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  ++I Y  G    AA RGDG +GED++  IR I  IP ++L+ N P  +EVRGE
Sbjct: 117 PKLDGLAVSIFYVNGVLTQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPARLEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEI 249
           V++    F  LN+  +  G K +ANPRNAA+G LR+L+P   +R  L F  + +G    +
Sbjct: 177 VFMPHEGFNRLNERALEHGEKTFANPRNAAAGSLRQLDPKITSRRPLVFNAYSVGIAEGV 236

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 YE LQ ++ +G PVN+ V+  +    ++ +Y  M+  R TL YDIDG V K+++
Sbjct: 237 ELPATHYERLQWLKSVGIPVNSEVQLCDGSEKVLEFYRSMQQKRPTLGYDIDGTVLKIND 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++LG  +++PRW I++KF  ++  TRL D++ Q+GRTG +TPVA+L PV + G  +
Sbjct: 297 IGLQRELGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLAPVFVAGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L           DI +GD V+++RAG+VIP+++ ++   R  +AQ  
Sbjct: 357 SNATLHNGDEIARL-----------DIAIGDTVVIRRAGDVIPQIIGVLHERRPANAQAI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S++VR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G 
Sbjct: 406 VFPTQCPVCGSKIVRIEGE------AVARCTGGLFCDAQRKEALKHFVSRRAMDIDGVGA 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     IR PAD+F L         ++      G+ S  N  DS+ K +N 
Sbjct: 460 KLIEQLVDKE----LIRTPADLFKLDLITLMRLERM------GEKSAQNALDSLEKAKNT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFIF+LGIR VG   A +LA ++ +           +            V  VG+++
Sbjct: 510 TLARFIFALGIREVGEATALNLANHFKNLDALQAASPEQLQ----------EVADVGEVV 559

Query: 609 AQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A  I  F++   NI AV  L+ + +       ++   +  + K +V TGTL ++ R++ +
Sbjct: 560 ANRIYVFWREQHNIDAVNDLIAQGIHWETVETKEAGENPFKGKTVVLTGTLTQMGRNETK 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + + QLGA  +  +S KT  +I GDN GSKL KAQ+LGV +M+E +FL ++  Y 
Sbjct: 620 DLLQQLGAKAAGSVSAKTHFVIAGDNAGSKLTKAQELGVAVMSEAEFLAIVNAYK 674


>gi|167619582|ref|ZP_02388213.1| DNA ligase, NAD-dependent [Burkholderia thailandensis Bt4]
          Length = 691

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/726 (36%), Positives = 399/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  S  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE+      V H  P LSL   ++ +D+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + +IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + + DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRMLDVRGEVLMFRRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G    +        +L     LG PVN          G++ +++ + + R +LPYD
Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C SRV R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S                     L
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIDEL 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E L  +     P      +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 KLLEGH 689


>gi|221198328|ref|ZP_03571374.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
 gi|221208267|ref|ZP_03581271.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
 gi|221171915|gb|EEE04358.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
 gi|221182260|gb|EEE14661.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
          Length = 691

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/731 (35%), Positives = 394/731 (53%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L R    +  
Sbjct: 1   MARTQAEPPASQPDARA----AWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLES 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GG +      V H  P LSL   +  +D+  F  R+     K
Sbjct: 57  DHPDLV---TPDSPTQRVGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP
Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L  + +P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P    
Sbjct: 174 LKLKGDRVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L     LG PVN          G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGMPIPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ I +Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGAVLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S         + +   
Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMNATIDEL--- 563

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                  + V  VG I+A++I +F+    N   +E L        P      K     + 
Sbjct: 564 -------LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD +I G   GSKL KA+ LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDDAKEMLEAAGAKVAGSVSKKTDYVIAGIEAGSKLAKAEALGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|37525354|ref|NP_928698.1| NAD-dependent DNA ligase LigA [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81416713|sp|Q7MBH2|DNLJ_PHOLL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|36784781|emb|CAE13691.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 672

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 392/714 (54%), Gaps = 49/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L   + +H+  Y+    P I D+EYD L +    +   +P+L  S   + 
Sbjct: 1   MKSTAQQIEKLRTTLRHHEYLYHVMDAPEIPDAEYDRLMQELQDLEEQYPELITS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  +IG     +  +V H IP LSL+ +++ E    F  R+    ++  D  +    E K
Sbjct: 58  PTQRIGAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKETQD--LVVCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE++++ IR I  IP  L   NIP  IE+RGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITSNIRTIGAIPLRLFGENIPARIEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQKGFEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE L + +  G PV++ V+       ++ +Y+++ + RS L +DIDG+V K++   
Sbjct: 236 PASHYERLIQFKKWGLPVSDKVKVCTDSQQVIDFYHDIVNQRSALGFDIDGVVVKINSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  AR+PRW  + KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEILGFVARAPRWATAFKFPAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVSGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+++RAG+VIP+VV ++   R  D+    F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIIRRAGDVIPQVVGVLEERRPQDSNVVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C + + R          A  RCTGGL C AQ+ E L+HFVSR A +++G+G++ 
Sbjct: 405 PEHCPVCGADIERIEGE------AVARCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     ++ PAD+F L   + T   ++      G  S  N+ D++ K +  + 
Sbjct: 459 IDQLVDKE----YVKTPADLFRLTAGKLTGLDRM------GPKSAQNVVDALEKAKKTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++                 + D  +L  V  VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGELDKLR----------SADEEALKEVQDVGEVVAK 558

Query: 611 AIVEFYQNPRNICA----VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +V F+  P N       ++ +     P +    + + S    K +V TG+L ++ R +A
Sbjct: 559 HVVNFFIEPHNQTVIDDLIDDIGINWEPVVVTRAEKIDSPFSGKTVVLTGSLHQLSRDEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +  LGA V+  +S+KTD++I G+  GSKL KA +L + +++EE+ + LL +
Sbjct: 619 KAKLVALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIPVIDEEEMIRLLGE 672


>gi|294677201|ref|YP_003577816.1| DNA ligase [Rhodobacter capsulatus SB 1003]
 gi|294476021|gb|ADE85409.1| DNA ligase (NAD(+)) [Rhodobacter capsulatus SB 1003]
          Length = 707

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/719 (40%), Positives = 433/719 (60%), Gaps = 17/719 (2%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M       +++L+  +A  E+  L   I   +  Y+    P I D++YDALKRR  AI  
Sbjct: 2   MSAAPFSDLDSLTRAEAEAEVPELVARIEAANHAYHTLDAPKISDADYDALKRRLAAIEA 61

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDLAR+   + P  ++G  +     KV H I  LSLE  +   D+  F  R+  +   
Sbjct: 62  RFPDLARA---DSPTMRVGAAVAEGFGKVAHEIRMLSLENAFLDADVADFDGRMRSYLGL 118

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             ++++  T EPKIDG  +++RYE G  V AA RGDG  GE+V+   R I  IP+ L+  
Sbjct: 119 GPESALPCTAEPKIDGLSLSLRYEDGLLVQAATRGDGEVGENVTENARTIADIPQRLT-G 177

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P ++EVRGEVY+S  DF ALN      G K +ANPRNAA+G +R+L+     +R L FF
Sbjct: 178 APAVLEVRGEVYMSHADFAALNARQAERGDKTFANPRNAAAGSVRQLDARITASRPLKFF 237

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G  SE  +  Q   +++++ LGF  N   R       ++++Y  +++ R+TL YDI
Sbjct: 238 AYSWGVLSEPLSDTQLGAIERLKALGFQTNPLTRLCADTAEMLAHYRAIEAQRATLGYDI 297

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV++ +LQ +LG R+ +PRW I+HKF  + A TRL  I+IQ+GRTG L+PVARL 
Sbjct: 298 DGVVYKVNDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLA 357

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNEDYI GL + G+V+R G+DIR GD V V RAG+VIPKV D+ ++
Sbjct: 358 PVTVGGVVVSNATLHNEDYIAGLSSKGEVIRDGKDIREGDWVQVYRAGDVIPKVADVDLS 417

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R P AQPF FP  CP C S  +R+      +  A  RCTGGL C AQ +E+LKHFVSR 
Sbjct: 418 RRDPAAQPFVFPHLCPECGSEALRE------EGDAVRRCTGGLICPAQAVEKLKHFVSRA 471

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLG +Q++ F+K       IR PA+IFTLQ R      +++N  G+G+ S  NL+
Sbjct: 472 AFDIEGLGAKQVEAFYKD----GWIREPAEIFTLQARFGAGLQQLKNREGWGEKSAQNLF 527

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I ++R I L R IF+LGIRHVG   A   A +YL+++ F   +   +  +  +W  L+
Sbjct: 528 QAIEEKRKIPLARLIFALGIRHVGESSAALFATHYLTWERFEAAMRAAVPGS-AEWQELL 586

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  VG+ +A ++   +       A++ L+  ++       +   S +    +VFTGTL+
Sbjct: 587 SIDGVGETLAASVTAAFHPGAERDAIDRLVTHLTVEPAVP-RASDSPVAGLTVVFTGTLE 645

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++ R +A+     LGA V+  +S KTDI++ G   GSK +KA  LGV++++EE ++ L+
Sbjct: 646 RMTRAEAKARAEALGAKVAGSVSAKTDILVAGPGAGSKAKKAADLGVRVIDEEAWIRLI 704


>gi|308187689|ref|YP_003931820.1| DNA ligase [Pantoea vagans C9-1]
 gi|308058199|gb|ADO10371.1| DNA ligase [Pantoea vagans C9-1]
          Length = 672

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/713 (34%), Positives = 392/713 (54%), Gaps = 49/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   + +H+  Y+    P + D+EYD L R    +    PDL     P+ 
Sbjct: 1   MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H +P LSL+  ++      F  R+    +  DD  I +  E K
Sbjct: 58  PTQRVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKSSDD--ITYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++A +R I  IP  L   NIP  +EVRGE++
Sbjct: 116 LDGAAVSLMYENGLLVRAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEIF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           +++  F  LN+E      K +ANPRNAA+G LR+L+P     R L FF +G G       
Sbjct: 176 MTQRGFEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  LQ+ +  G PV++ ++  +     +++Y +++  R  L +DIDG+V KVD  +
Sbjct: 236 PHSHMGRLQQFKAWGLPVSDRIKLVHNAEEALAFYRDIEQQRPNLGFDIDGVVIKVDSQA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GDRV+++RAG+VIP+VV++++ ER  + +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          +  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PAHCPVCGSEVERVEGE------SVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ D++ K ++ +L
Sbjct: 459 IDQLVEKE----YVDTPADLFRLTAGKLTGLDRM------GPKSAQNIVDALEKAKSTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++   Q               D  +LI VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLEALIAVPDVGKVVAA 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F +   N   +  L  ++     +      + + S    K +V TG+L ++ R  A
Sbjct: 559 HVRNFMEEESNREVIRQLTDDIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL 
Sbjct: 619 KAQLIALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLLD 671


>gi|219870289|ref|YP_002474664.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
 gi|254781340|sp|B8F314|DNLJ_HAEPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219690493|gb|ACL31716.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
          Length = 675

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/704 (36%), Positives = 406/704 (57%), Gaps = 46/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              +L  L +++  ++  Y+    P++ D+EYD L      +    P+L  S   + P  
Sbjct: 5   IETQLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITS---DSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +      ++TH IP LSL+  ++ +DL  F+ RI       + N I F  EPK+DG
Sbjct: 62  RVGAKPLDGFAQITHEIPMLSLDNAFSDDDLTGFLRRIEDRI-AINSNQIEFCCEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             ++I Y  G    AA RGDG +GED++A IR I  IP  L  N  P  +EVRGEV++ +
Sbjct: 121 LAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLEVRGEVFMPQ 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG--KTSEIFAK 252
             F  LN++ +A G K +ANPRNAA+G LR+L+P   + R L    + +G  ++ +    
Sbjct: 181 QGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGVYESDDELPT 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++ LQ ++ LG PVN  +  A     + ++Y ++++ RS+L YDIDG V KV+E +LQ
Sbjct: 241 THFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNEITLQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NAT
Sbjct: 301 EQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L            I +GD V+++RAG+VIP++V ++   R  +A+  +FP+
Sbjct: 361 LHNGDEIERL-----------GIAIGDTVIIRRAGDVIPQIVGVVAERRPDNAKKIAFPT 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++
Sbjct: 410 ACPVCNSAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              + E     I  PAD+F L         ++      G+ S  N   SI K +N +L R
Sbjct: 464 QLMERE----LIHTPADLFKLDHTTLMRLDRM------GEKSANNALQSIEKAKNTTLAR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+F+LGIR VG   A++LA ++ +     Q           D  +L +V  VG+++A  +
Sbjct: 514 FLFALGIRDVGESTAQNLANHFGTLDAIRQA----------DLDTLKQVQDVGEVVANRL 563

Query: 613 VEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F+Q P N+  VE L+ + V+      ++   + +++K +V TGTL ++ R +A+  + 
Sbjct: 564 FQFWQEPHNVEVVEDLIAQGVTWQDVVPQEIADNPLKDKTVVLTGTLTQLTRDQAKALLQ 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           QLG  VS  +S KTD +I G+  GSKL KAQ+LGVKI++E++ +
Sbjct: 624 QLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667


>gi|161524425|ref|YP_001579437.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616]
 gi|189350820|ref|YP_001946448.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
 gi|254781276|sp|A9AIK9|DNLJ_BURM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160341854|gb|ABX14940.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616]
 gi|189334842|dbj|BAG43912.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
          Length = 691

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/731 (35%), Positives = 394/731 (53%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L R    +  
Sbjct: 1   MARTQAEPPASQPDVRA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLES 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GG +      V H  P LSL   +  +D+  F  R+     K
Sbjct: 57  DHPDLV---TPDSPTQRVGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP
Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L  + +P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P    
Sbjct: 174 LKLKGDRVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L     LG PVN          G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ I +Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGAVLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S         + +   
Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMNATIDEL--- 563

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                  + V  VG I+A++I +F+    N   +E L        P      K     + 
Sbjct: 564 -------LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD +I G   GSKL KA+ LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDDAKEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEALGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|294504743|ref|YP_003568805.1| DNA ligase [Yersinia pestis Z176003]
 gi|262362805|gb|ACY59526.1| DNA ligase [Yersinia pestis D106004]
 gi|262366729|gb|ACY63286.1| DNA ligase [Yersinia pestis D182038]
 gi|294355202|gb|ADE65543.1| DNA ligase [Yersinia pestis Z176003]
          Length = 656

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/698 (34%), Positives = 396/698 (56%), Gaps = 47/698 (6%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + +H+  Y+    P I D+EYD + ++   +    P+L  +   + P  ++G     +  
Sbjct: 1   MRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DSPTQRVGAAPLDAFE 57

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           +V H +P LSL+ +++ E    F  R++   +  +   + F  E K+DG  +++ YE G+
Sbjct: 58  QVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELKLDGLAVSLLYENGE 115

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMI 206
            V AA RGDG +GE+++A +R I  IP  L   N+P  +EVRGEV++ +  F  LN+E  
Sbjct: 116 LVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAGFEQLNEEAR 175

Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCL 264
             G K +ANPRNAA+G LR+L+P     R L FF +G+G        +   + L + +  
Sbjct: 176 RKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHIQCLMQFKAW 235

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+ +LQ+QLG  AR+PRW
Sbjct: 236 GLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLALQEQLGFVARAPRW 295

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++NATLHN D I+ L  
Sbjct: 296 ATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIERL-- 353

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                     +R+GD V+V+RAG+VIP+VV +++ +R  D +  +FPS CP+C S + R 
Sbjct: 354 ---------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERV 404

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                    A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + ++   + +     +
Sbjct: 405 EGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQ----YV 454

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
             PAD+F L   + T   ++      G  S  NL  ++ K +  +  RF+++LGIR VG 
Sbjct: 455 ENPADLFQLTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTFARFLYALGIREVGE 508

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A +LA ++ +  N              D  +L  VP VG+++A+ ++ F     N   
Sbjct: 509 ATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAKHVMNFLSEEHNQKV 558

Query: 625 VEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
           +E L K VS    +    +   S    K +V TG+L  + R +A++ +T LGA VS  +S
Sbjct: 559 IEELEKVVSWPEPQQIVVEESDSPFAGKTVVLTGSLTILSRDEAKDRLTALGAKVSGSVS 618

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +KT ++I G+  GSKL KAQ+LG+K+++E + + LL +
Sbjct: 619 KKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 656


>gi|307261779|ref|ZP_07543445.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306868597|gb|EFN00408.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 676

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/707 (36%), Positives = 404/707 (57%), Gaps = 46/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 10  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 67  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 125

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP  L+  N P  +EVRGEV++ +  
Sbjct: 126 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 185

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254
           F  LN+  +  G K +ANPRNAA+G LR+L+P     R L    +G+G  ++ +      
Sbjct: 186 FETLNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 245

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 246 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 305

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 306 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 365

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 366 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 414

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 415 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 468

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+        ++      G+ S  N  +SI K +N +L RF+
Sbjct: 469 MERE----LVHTPADLFKLEHTTLMRLERM------GEKSAQNALNSIEKAKNTTLARFL 518

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 519 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 568

Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ + V        +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 569 FWQEPHNVAVVEDLISQGVHWQNVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 628

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  +
Sbjct: 629 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGE 675


>gi|186476101|ref|YP_001857571.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
 gi|254781277|sp|B2JID1|DNLJ_BURP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|184192560|gb|ACC70525.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
          Length = 683

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/722 (35%), Positives = 393/722 (54%), Gaps = 51/722 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R  +P  A S     +    L  E+   +  YY   +P + D+EYD L +    I    P
Sbjct: 3   RTQVPDPATSAP--AERALWLRDELERANYAYYVLDQPDLPDAEYDRLFKELQQIESEHP 60

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           DL     P+ P  ++GGE+      V H +P LSL   ++ ED+  F  R+         
Sbjct: 61  DLI---TPDSPTQRVGGEVASGFRPVVHDMPMLSLNNGFSDEDIAAFDKRVSDTLH---H 114

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IP 182
             + +  E K DG  I++RY  G+F  AA RGDG +GEDV+  +R I +IP  L    +P
Sbjct: 115 TPVDYACELKFDGLAISLRYVDGQFTQAATRGDGATGEDVTENVRTIRSIPLKLKGKRVP 174

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           ++++VRGEV + + DF  LN      G++ +ANPRNAA+G LR+L+P     R L+FF +
Sbjct: 175 KLVDVRGEVLMFRRDFDKLNQRQRDAGQREFANPRNAAAGSLRQLDPKMTAQRPLSFFAY 234

Query: 242 GLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G+G    I       E+L     +G PVN+         G++ +++++   R  LPYDID
Sbjct: 235 GIGVLDGIEMPGTHSELLDWYHEMGLPVNSERAVVQGAEGVLGFFHKVGEKRDKLPYDID 294

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKV+    Q  LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEP
Sbjct: 295 GVVYKVNRRDEQDALGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARLEP 354

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++  
Sbjct: 355 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLER 403

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R PDA+ F  P+ CP+C S + R  +       A  RC+GGL C AQ+ + L HF  R A
Sbjct: 404 RPPDAREFVMPTQCPVCGSAIERLPDE------AIARCSGGLFCPAQRKQALWHFAQRRA 457

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GLG++ +D   +       +R PAD+F L          +  +  F + S  NL D
Sbjct: 458 LDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLID 507

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ K ++ +L RFI++LGIRHVG   A+ LA+++ S                     L+ 
Sbjct: 508 SLEKAKHTTLARFIYALGIRHVGESTAKDLARHFGSLDPIMSAT----------VEELLE 557

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGT 657
           V  VG I+A+AI +F+    N   +E L      +         +    +  K +V TGT
Sbjct: 558 VNDVGPIVAEAIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPKAPQGVLAGKTVVLTGT 617

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R +A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    L
Sbjct: 618 LPNMGRDEAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 677

Query: 718 LQ 719
           L+
Sbjct: 678 LE 679


>gi|254247879|ref|ZP_04941200.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
 gi|124872655|gb|EAY64371.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
          Length = 691

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/731 (35%), Positives = 395/731 (54%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L R    +  
Sbjct: 1   MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLET 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L     P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  DHPELV---TPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE+G FV AA RGDG +GEDV+  +R I +IP
Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L    +P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+     
Sbjct: 174 LKLKGKHVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L     LG PVN      +   G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGALLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                 L+ V  VG I+A++I +F+    N   +E L        P      K     + 
Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|134296034|ref|YP_001119769.1| DNA ligase [Burkholderia vietnamiensis G4]
 gi|166215568|sp|A4JF81|DNLJ_BURVG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|134139191|gb|ABO54934.1| DNA ligase, NAD-dependent [Burkholderia vietnamiensis G4]
          Length = 691

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/731 (35%), Positives = 394/731 (53%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L      +  
Sbjct: 1   MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L     P+ P  ++GG +      V H  P LSL   ++ +D+  F  R+     K
Sbjct: 57  DHPELV---TPDSPTQRVGGAVASGFTPVVHDAPMLSLNNGFSDDDIVAFDKRVADALDK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE+G FV A+ RGDG +GEDV+  +R I +IP
Sbjct: 114 PTDLAGSVTDPVEYACELKFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L   ++P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P    
Sbjct: 174 LKLKGAHVPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L     LG PVN          G++ ++ ++   
Sbjct: 234 QRPLSFFSYGIGVLDGMPMPDTHSALLDWYEALGLPVNRERAVVRGAQGLLEFFRKVGER 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  ++  R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGALLERRPVDAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLDPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                 L+ V  VG I+A++I +F+    N   ++ L        P      K     + 
Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIDQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|307257368|ref|ZP_07539138.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306864218|gb|EFM96131.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 682

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/707 (36%), Positives = 403/707 (57%), Gaps = 46/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP  L+  N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254
           F ALN+  +  G K +ANPRNAA+G LR+L+P     R L    +G+G  ++ +      
Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+        ++         S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKLEHTTLMRLERMGG------KSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ + V        +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVAVVEDLISQGVHWQNVIQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  +
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLVKAQELGVKVLTEQEFIALTGE 681


>gi|83720010|ref|YP_442546.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
 gi|257138755|ref|ZP_05587017.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
 gi|123753789|sp|Q2SX03|DNLJ_BURTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83653835|gb|ABC37898.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
          Length = 691

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/726 (36%), Positives = 398/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  S  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE+      V H  P LSL   ++ +D+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + +IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + + DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRMLDVRGEVLMFRRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G    +        +L     LG PVN          G++ +++ + + R +LPYD
Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  + 
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVF 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C SRV R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S                     L
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIDEL 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E L  +     P      +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 KLLEGH 689


>gi|206560458|ref|YP_002231222.1| DNA ligase [Burkholderia cenocepacia J2315]
 gi|254781275|sp|B4ECN6|DNLJ_BURCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|198036499|emb|CAR52396.1| DNA ligase [Burkholderia cenocepacia J2315]
          Length = 691

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/731 (35%), Positives = 393/731 (53%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L R    +  
Sbjct: 1   MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLET 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L     P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  DHPELV---TPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE G FV AA RGDG +GEDV+  +R I +IP
Sbjct: 114 ATDLAGSVTDPVEYACELKFDGLAISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L    +P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+     
Sbjct: 174 LKLKGKHVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L      G PVN      +   G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHTALLDWYEAFGLPVNRERAVVHGAEGLLDFFRKVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGALLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                 L+ V  VG I+A++I +F+    N   +E L        P      K     + 
Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|126736446|ref|ZP_01752187.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2]
 gi|126713984|gb|EBA10854.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2]
          Length = 715

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/713 (42%), Positives = 437/713 (61%), Gaps = 16/713 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +P+ +LS EQA KELS L  +++  +  Y++   P I D+ YDALKRR  AI   FPDL 
Sbjct: 15  VPVASLSPEQATKELSWLATQLNAANTAYHRDDAPDISDATYDALKRRNAAIEAQFPDLK 74

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    + P   +GG++     KV H +  LSL   ++ +D+ +F  RI ++     D  +
Sbjct: 75  RQ---DSPSETVGGQIAEGFGKVKHVVRMLSLGNAFDDDDVHEFDQRIRKYLGLAADALL 131

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE GK + AA RGDG +GE+V+   R I  IP  ++   P+++E
Sbjct: 132 TYTAEPKIDGLSLSLRYEDGKLIQAATRGDGETGENVTNNARTIADIPAKVN-GAPDVLE 190

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           VRGEVY+S +DF ALN     VG K +ANPRNAA+G LR+L+     +R L FF +  G 
Sbjct: 191 VRGEVYMSHDDFTALNARQAEVGGKTFANPRNAAAGSLRQLDAEITKSRPLRFFAYAWGD 250

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A+ Q   + K++ LGF  N      +    ++++Y  +++ R+ L YDIDG+VYK
Sbjct: 251 LSARLAQTQSGAIAKLKTLGFSTNPLTEACDGPAAMIAHYKGIEAQRANLGYDIDGVVYK 310

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 311 VDDLTLQRRLGFRSTTPRWAIAHKFPAELAWTVLEAIDIQVGRTGALSPVARLRPVTVGG 370

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI G D +G  +R GRDIRVGD V V RAG+VIPKV DI +  R  DA
Sbjct: 371 VVVSNATLHNEDYIAGRDGNGDPIREGRDIRVGDWVQVYRAGDVIPKVKDIDLARRPKDA 430

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+  P+ CP C S  +R+      +  A  RCTGG+ C AQ +E+LKHF+SR AF+IEG
Sbjct: 431 MPYQMPARCPECGSDAIRE------EGDAVRRCTGGIICPAQAVEKLKHFISRTAFDIEG 484

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F+        I  PADIFTL+ R      +++N  G+GD S  NL+D+I+++
Sbjct: 485 LGAKQVEQFYAD----GWIATPADIFTLRVRFSEGLQQLKNREGWGDKSAANLFDAIDEK 540

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R ISL R I+SLGIRHVG   A  LA +Y S+  F Q +          W  L  +  VG
Sbjct: 541 REISLARVIYSLGIRHVGENSAALLANHYTSWTAFEQAMTAAQIGEGHAWDELNNIDGVG 600

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++A +++   Q      +++ L+KE+        +   S +  K +VFTGTL+++ R +
Sbjct: 601 AVMATSLITTMQQEAERASIDQLIKELDVQ-DAEARATDSPVAGKTVVFTGTLERMTRAE 659

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+     LGA VS  +S KTDI+I G   GSK +KA  LG++ M+E+ +L L+
Sbjct: 660 AKARAETLGAKVSGSVSAKTDILIAGPGAGSKAKKAADLGIETMDEDAWLSLI 712


>gi|307132386|ref|YP_003884402.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
 gi|306529915|gb|ADM99845.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
          Length = 683

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/726 (35%), Positives = 406/726 (55%), Gaps = 52/726 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +++  P + +S    +  + +L  ++ YH+  Y+    P I D+EYD L      +  
Sbjct: 1   MLEKESKPADDISTVSVQ--IEALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKTLEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A P+L     P+ P  ++G     +   + H +P LSL+ +++      F  RI    + 
Sbjct: 59  AHPELV---TPDSPTQRVGATPLDAFDTIAHEVPMLSLDNVFDETSFLAFSKRINDRLK- 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
            +D  + F  E K+DG  +++ YE G  V AA RGDG +GE+++A IR +  IP  L   
Sbjct: 115 -NDGELTFCCELKLDGLAVSLLYENGLLVRAATRGDGTTGENITANIRTVGAIPLRLRGD 173

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           NIP+ +EVRGEV++    F ALN+E    G K +ANPRNAA+G LR+L+P    TR L F
Sbjct: 174 NIPQRLEVRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTF 233

Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
             +G+G           ++ L + R  G PV++ +R       ++ +Y +++  R TL +
Sbjct: 234 LCYGVGLVEGGALPDTHWQRLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERETLGF 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V KV+E +LQ++LG  AR+PRW ++ KF  ++  T L D++ Q+GRTG +TPVAR
Sbjct: 294 DIDGVVIKVNELTLQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVAR 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV + G +++NATLHN D I+ L            I++GDRV V+RAG+VIP++V ++
Sbjct: 354 LEPVAVAGVVVSNATLHNADEIERL-----------GIQIGDRVAVRRAGDVIPQIVSVV 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           ++ER  DA+P  FP  CP+C S + R          A  RCTGGL C AQ+ E LKHFVS
Sbjct: 403 LSERPADARPVVFPEQCPVCGSELERVDGE------AVTRCTGGLFCGAQRKEALKHFVS 456

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A ++EG+G + +D   + E     ++ PAD+F L     T   ++      G  S  N
Sbjct: 457 RRALDVEGMGDKIIDQLVEKE----YVKTPADLFRLSAGILTGLDRM------GPKSAQN 506

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L +++NK ++ +  RF+++LGIR VG   A SLA ++ + +          A  + D  +
Sbjct: 507 LVNALNKAKSTTFARFLYALGIRDVGEATAASLASHFGTLE----------ALQSADLEA 556

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-----KEVSPSIGRHEKNVSSEIENKKL 652
           L +V  VG ++A  +  F     N   ++ L+           +    +   S    K +
Sbjct: 557 LQQVQDVGIVVATHVRNFLDEAHNQQVIQELISENIGIHWPAPVVVDVEASDSPFAGKTV 616

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L  + R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E 
Sbjct: 617 VLTGSLTLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLTKAQELGIEVIDEA 676

Query: 713 QFLFLL 718
           + + LL
Sbjct: 677 EMMRLL 682


>gi|107028796|ref|YP_625891.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
 gi|105897960|gb|ABF80918.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
          Length = 746

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/731 (35%), Positives = 395/731 (54%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L R    +  
Sbjct: 56  MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLET 111

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L     P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K
Sbjct: 112 DHPELV---TPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAK 168

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE+G FV AA RGDG +GEDV+  +R I +IP
Sbjct: 169 TTDLAGSVTDPVEYACELKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIP 228

Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L    +P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+     
Sbjct: 229 LKLKGKHVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITA 288

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L     LG PVN      +   G++ ++ ++   
Sbjct: 289 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEK 348

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 349 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 408

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 409 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 457

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 458 EVVGALLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 511

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 512 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 561

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 562 EKSAQNLIDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 613

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                 L+ V  VG I+A+++ +F+    N   +E L        P      K     + 
Sbjct: 614 --SIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 671

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +
Sbjct: 672 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 731

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 732 LDEDGLHQLLE 742


>gi|190150622|ref|YP_001969147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|307263969|ref|ZP_07545570.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|254781246|sp|B3H275|DNLJ_ACTP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189915753|gb|ACE62005.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306870658|gb|EFN02401.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 682

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/707 (35%), Positives = 403/707 (57%), Gaps = 46/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP  L+  N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLNQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254
           F ALN+  +  G K +ANPRNAA+G LR+L+P     R L    +G+G  ++ +      
Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+        ++         S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKLEHTTLMRLERMGG------KSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ + +        +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  +
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIALTGE 681


>gi|307250556|ref|ZP_07532498.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857372|gb|EFM89486.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 682

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/707 (35%), Positives = 404/707 (57%), Gaps = 46/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR +  IP  L+  N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254
           F  LN+  +  G K +ANPRNAA+G LR+L+P     R L    +G+G  ++ +      
Sbjct: 192 FETLNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+        ++      G+ S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKLEHTTLMRLERM------GEKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ + V        +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVAVVEDLISQGVHWQNVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  +
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIALTGE 681


>gi|167855687|ref|ZP_02478444.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
 gi|167853205|gb|EDS24462.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
          Length = 675

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/704 (36%), Positives = 405/704 (57%), Gaps = 46/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              +L  L +++  ++  Y+    P++ D+EYD L      +    P+L  S   + P  
Sbjct: 5   IETQLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITS---DSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +      ++TH IP LSL+  ++ +DL  F+ RI       + N I F  EPK+DG
Sbjct: 62  RVGAKPLDGFAQITHEIPMLSLDNAFSDDDLIGFLRRIEDRI-AINSNQIEFCCEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             ++I Y  G    AA RGDG +GED++A IR I  IP  L  N  P  +EVRGEV++ +
Sbjct: 121 LAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLEVRGEVFMPQ 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG--KTSEIFAK 252
             F  LN++ +A G K +ANPRNAA+G LR+L+P   + R L    + +G  ++ +    
Sbjct: 181 QGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGVYESDDELPT 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++ LQ ++ LG PVN  +  A     + ++Y ++++ RS+L YDIDG V KV+E +LQ
Sbjct: 241 THFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNEITLQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NAT
Sbjct: 301 EQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L            I +GD V+++RAG+VIP++V ++   R  +A+  +FP+
Sbjct: 361 LHNGDEIERL-----------GIAIGDTVIIRRAGDVIPQIVGVVAERRPDNAKKIAFPT 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++
Sbjct: 410 ACPVCNSAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              + E     I  PAD+F L         ++      G+ S  N   SI K +N +L R
Sbjct: 464 QLMERE----LIHTPADLFKLDHTTLMRLERM------GEKSANNALQSIEKAKNTTLAR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+F+LGIR VG   A++LA ++ +     Q           D  +L +V  VG+++A  +
Sbjct: 514 FLFALGIRDVGESTAQNLANHFGTLDAIRQA----------DLDTLKQVQDVGEVVANRL 563

Query: 613 VEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F+Q P N+  VE L+ + V       ++   + +++K +V TGTL ++ R +A+  + 
Sbjct: 564 FQFWQEPHNVEVVEDLIAQGVKWQDVVPQEIADNPLKDKTVVLTGTLTQLTRDQAKALLQ 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           QLG  VS  +S KTD +I G+  GSKL KAQ+LGVKI++E++ +
Sbjct: 624 QLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667


>gi|46143448|ref|ZP_00135242.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208768|ref|YP_001053993.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae L20]
 gi|166215385|sp|A3N1V2|DNLJ_ACTP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126097560|gb|ABN74388.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 683

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 405/707 (57%), Gaps = 46/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+       + P  ++
Sbjct: 17  AQLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITV---DSPTQRV 73

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 74  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 132

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP  L+  N P  +EVRGEV++ +  
Sbjct: 133 VSILYVDGVLSQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 192

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254
           F  LN+  +  G K +ANPRNAA+G LR+L+P     R L    +G+G  ++ +      
Sbjct: 193 FEELNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 252

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y  +++ R TL YDIDG V KV++  LQ+Q
Sbjct: 253 FERLQWLKSIGIPVNNEIRLATGREQLLAFYANIQAKRPTLGYDIDGTVLKVNDIGLQEQ 312

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 313 LGFISRSPRWAIAYKFPSQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 372

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V ++++ R  +A+   FP+ C
Sbjct: 373 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMDRRPENAKKIEFPTAC 421

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 422 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 475

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L         ++      G+ S  N  +SI K +N +L RF+
Sbjct: 476 MERE----LVHTPADLFKLDHTTLMRLERM------GEKSAQNALNSIEKAKNTTLARFL 525

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++          +N+ A     +  L  V  VG+++A  IV 
Sbjct: 526 FALGIRDVGEATAQNLANHF----------HNLAAIRTATFEQLQAVQDVGEVVANRIVR 575

Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ + V        +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 576 FWQEPHNVAVVEDLISQGVHWQDVIQVEIADNPLKGKNVVLTGTLTQLTRDQAKALLQSF 635

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +S KTD +I G+  GSKL KAQ+LGVKI+ E++F+ L  +
Sbjct: 636 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILTEQEFIALTGE 682


>gi|290476106|ref|YP_003469005.1| DNA ligase [Xenorhabdus bovienii SS-2004]
 gi|289175438|emb|CBJ82241.1| DNA ligase [Xenorhabdus bovienii SS-2004]
          Length = 672

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/714 (34%), Positives = 398/714 (55%), Gaps = 49/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L R    +    P+L  +   + 
Sbjct: 1   MESIIEKINKLRATLRHHEYLYHVMDAPEIPDAEYDRLLRELKVLEEQHPELITA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H IP LSL+ +++ E    F  R+    +  D   + F  E K
Sbjct: 58  PTQRVGAAPLTAFGQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLK--DSRDLVFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++  +R I  IP  L  N IP  +E+RGEV+
Sbjct: 116 LDGLAVSLLYEDGELVQAATRGDGTTGENITVNVRTIHAIPLRLKGNNIPARVEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LNDE    G K +ANPRNAA+G LR+L+P     R L F+ +G+G       
Sbjct: 176 MKQGGFEKLNDEARRKGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE L + +  G PV++ V+       ++ +Y+ ++  R  L +DIDG+V KVD   
Sbjct: 236 PASHYERLMQFKQWGLPVSDNVKLCQGTQQVIDFYHNIEQQRPILGFDIDGIVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A++PRW  + KFA ++  T + D++ Q+GRTG +TPVARL+PV + G +++N
Sbjct: 296 LQETLGFVAKAPRWATAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLKPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+++RAG+VIPKVV ++ ++R  ++Q   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVVIRRAGDVIPKVVGVVQDKRPAESQEVIF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P +CP+C+S + R          +  RCTGGL C AQ+ E LKHFVSR A +++G+G++ 
Sbjct: 405 PEYCPVCRSDIERVEGE------SVARCTGGLFCGAQRKEALKHFVSRRAMDVDGMGEKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     ++ PAD+F L   + T   ++      G  S  N  D++ K +  + 
Sbjct: 459 IEQLVDKE----YVKTPADLFRLSAGKLTGLERM------GPKSAQNTIDALEKSKKTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI+SLGIR VG   A +L  ++++ +               D  +LI V  VG ++A 
Sbjct: 509 ARFIYSLGIREVGEATAANLVAHFVTLEKLRAA----------DTEALIAVQDVGGVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666
            +V F+  P N   ++ L+  +       E      V +    K +V TG+L ++ R +A
Sbjct: 559 HVVNFFNEPHNQTVIDDLIDNIGIYWESVETLQSDTVGNSFAGKTVVLTGSLNRLSRDEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +T LGA V+  +S+KTD++I G+  GSKL KA +LG+++++EE+ L LL +
Sbjct: 619 KDKLTALGAKVTGSVSKKTDLVIAGEAAGSKLAKATELGIEVIDEEEMLRLLGE 672


>gi|116690045|ref|YP_835668.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
 gi|166215562|sp|A0K8E8|DNLJ_BURCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215593|sp|Q1BHI7|DNLJ_BURCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116648134|gb|ABK08775.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
          Length = 691

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/731 (35%), Positives = 395/731 (54%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L R    +  
Sbjct: 1   MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLET 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L     P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  DHPELV---TPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE+G FV AA RGDG +GEDV+  +R I +IP
Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L    +P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+     
Sbjct: 174 LKLKGKHVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L     LG PVN      +   G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGALLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLIDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                 L+ V  VG I+A+++ +F+    N   +E L        P      K     + 
Sbjct: 559 --SIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|113460523|ref|YP_718587.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 129PT]
 gi|122945214|sp|Q0I2H6|DNLJ_HAES1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|112822566|gb|ABI24655.1| DNA ligase (NAD+) [Haemophilus somnus 129PT]
          Length = 673

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 404/707 (57%), Gaps = 45/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L Q + +H+  Y+    P I DSEYD L  +  A+   +P+ A     N P  
Sbjct: 8   IKQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYA---SENSPTQ 64

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +   +  +V H IP LSL+  ++ ED   F+ RI         +S+ F  EPK+DG
Sbjct: 65  RVGAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRL-IHVHHSLTFCCEPKLDG 123

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             ++I Y  G+ V AA RGDG +GED++A IR I  IP ++L+ N P  +EVRGEV++S+
Sbjct: 124 LAVSILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVFMSQ 183

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI-FAKG 253
             F  LN   +A G K +ANPRNAA+G LR+L+P     R L    +G+G    +     
Sbjct: 184 AGFEKLNKTALAKGEKTFANPRNAAAGSLRQLDPKITGQRPLMLNAYGIGIAEGVELPDT 243

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +  LQ ++ +G PVNN ++  +    ++ +Y  +K  RS+L YDIDG V K+++  LQ+
Sbjct: 244 HFARLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQQ 303

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +++PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV + G  ++NATL
Sbjct: 304 QLGFISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNATL 363

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L           DI +GD V+V+RAG+VIP+++ ++   R  +A+   FPS 
Sbjct: 364 HNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPSN 412

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S + +          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ 
Sbjct: 413 CPVCDSVISKIEGE------AVARCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIEQ 466

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + E     +  PAD+F L +       ++         S  N   S+ K +  +L RF
Sbjct: 467 LVERE----LVHTPADLFKLDQVTLMRLERMGA------KSAENALASLAKAKKTTLARF 516

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG   A +LA ++ + + F           N  +  L +V  VG+++A+ I 
Sbjct: 517 IFALGIREVGETTALNLATHFKTLEAF----------ENATFEQLQKVQDVGEVVAKRIR 566

Query: 614 EFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F+  P N+  V+ L+ + +       ++   + ++ K +V TGTL K+ R +A+EY+ Q
Sbjct: 567 SFWSEPHNVAVVKDLIAQGIHWDDVEVKEVRDNPLKGKTVVLTGTLTKMGRSEAKEYLLQ 626

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LG  VS  +S KTD +I G++ GSKL KA +LG+ I++E +FL LL 
Sbjct: 627 LGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFLALLA 673


>gi|172060972|ref|YP_001808624.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
 gi|254781273|sp|B1YSH2|DNLJ_BURA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171993489|gb|ACB64408.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
          Length = 691

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/731 (35%), Positives = 393/731 (53%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L      +  
Sbjct: 1   MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLET 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GGE+      V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  DHPDLV---TPDSPTQRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP
Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L   ++P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P    
Sbjct: 174 LKLKGAHVPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L      G PVN          G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  ++  R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGALLERRPDDAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                 L+ V  VG I+A++I +F+    N   +E L        P      K     + 
Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|312114833|ref|YP_004012429.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100]
 gi|311219962|gb|ADP71330.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100]
          Length = 777

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/739 (40%), Positives = 441/739 (59%), Gaps = 51/739 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E LS E A+ E  +L  EI+ HD  Y Q + P I D+EYD L+ R +A+  AFP L    
Sbjct: 57  EHLSAEDAKDEHDALAAEIARHDLLY-QDAAPEISDAEYDRLRLRLNALEAAFPSLI--- 112

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P  P   +G   +    KV H++  LSL  +++ ED+  F  R+ RF +   D ++  T
Sbjct: 113 TPESPSQTVGATPSEKFAKVRHTVRMLSLGNVFSDEDVADFAGRVRRFLKFAPDEALDVT 172

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            E KIDG  +++RYE G+   AA RGDG  GEDV+A +R I  IP+V+  N +P + EVR
Sbjct: 173 AEMKIDGLSVSLRYENGRLAVAATRGDGSEGEDVTANVRTIADIPQVIRANDVPAVFEVR 232

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+S  DF ALN+  +  G + +ANPRNAA+G LR+L+P     R L FF  G G+  
Sbjct: 233 GEVYMSHADFQALNERQVGKGGRMFANPRNAAAGSLRQLDPAITAARPLRFFAWGWGEVR 292

Query: 248 EI------FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                    A   + +LQ +   GFP+   V    +   +++ Y  ++  R++L YDIDG
Sbjct: 293 GWGEASALPADTNFGVLQAIHGWGFPLPP-VEICRSVEEMLAVYRAIEMKRASLGYDIDG 351

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKV+   LQ++LG  +R+PRW  +HKF+ ++A+T L  IDIQ+GRTG LTPVA+L PV
Sbjct: 352 VVYKVNRLDLQERLGFISRTPRWATAHKFSAEKATTVLNGIDIQVGRTGALTPVAKLAPV 411

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG ++ NATLHNED I+            +D+R+GD V+V+RAG+VIP+++  ++ +R
Sbjct: 412 TVGGVVVQNATLHNEDEIRR-----------KDVRIGDTVIVQRAGDVIPQILGPVLEQR 460

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             DA  F FP+ CP+C S  VR+ +PKTGK+ A  RCTGGL C+AQ +ERL+HFVSR AF
Sbjct: 461 PADAVEFVFPTLCPVCGSHAVRETHPKTGKVDAVRRCTGGLICAAQAVERLRHFVSRHAF 520

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG++ +  FF        I+ PADIFT+  R      K+    G+G  S  NL+ +
Sbjct: 521 DIEGLGEKNIQAFFDEGR----IKAPADIFTMAARDGVDLPKLSEKEGWGAQSAANLFAA 576

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN-------------II 588
           I  RR ISLERFIF+LGIRHVG   A+ LAK + S       +               + 
Sbjct: 577 IEARRTISLERFIFALGIRHVGETTAKLLAKTFGSLDALRAAMAEPDAAELRPGDELLLE 636

Query: 589 AHNNDDWLS---------LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
           + + +D  S         L  +  +GD++AQ+IV+F+  P N  AV+AL +E++    + 
Sbjct: 637 SASGEDKRSLHRAIILAKLNEIDGIGDVVAQSIVDFFDEPHNREAVDALRRELTIEAYKP 696

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           ++ VSS +    +VFTG L++  R +A+    + GA V+  +S+ T  ++ G   GSKL+
Sbjct: 697 DQ-VSSLLAGATVVFTGKLERFTRDEAKAQAERFGAKVAGSVSKATTYLVAGPGAGSKLK 755

Query: 700 KAQQLGVKIMNEEQFLFLL 718
           KA+ LGVK+M E+++L ++
Sbjct: 756 KAEDLGVKVMTEDEWLEMI 774


>gi|221215451|ref|ZP_03588415.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
 gi|221164635|gb|EED97117.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
          Length = 691

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/731 (35%), Positives = 393/731 (53%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L R    +  
Sbjct: 1   MARTQAEPPASQPDARA----AWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLES 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GG +      V H  P LSL   +  +D+  F  R+     K
Sbjct: 57  DHPDLV---TPDSPTQRVGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP
Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L    +P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P    
Sbjct: 174 LKLKGERVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L     LG PVN          G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ I +Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGAVLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S         + +   
Sbjct: 507 EKSAQNLLDSLKKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMNATIDEL--- 563

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                  + V  VG I+A++I +F+    N   +E L        P      K     + 
Sbjct: 564 -------LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD +I G   GSKL KA+ LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDDAKEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEALGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|171322051|ref|ZP_02910925.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
 gi|171092642|gb|EDT37943.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
          Length = 691

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/731 (35%), Positives = 393/731 (53%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L      +  
Sbjct: 1   MARTQAEPPASQPEARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLET 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L     P+ P  ++GGE+      V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  DHPELV---TPDSPTQRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALNK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D        + +  E K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP
Sbjct: 114 TTDLAGSVTEPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L   ++P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P    
Sbjct: 174 LKLKGAHVPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L      G PVN          G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGVPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGALLDRRPDDAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELS----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                 L+ V  VG I+A++I +F+    N   +E L        P      K     + 
Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|163747147|ref|ZP_02154503.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45]
 gi|161379708|gb|EDQ04121.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45]
          Length = 685

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/686 (42%), Positives = 419/686 (61%), Gaps = 15/686 (2%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+    P I D+EYDALKRR  AI   +PDL R    + P  ++G  +     KV H++ 
Sbjct: 12  YHTEDAPEISDAEYDALKRRNAAIEARYPDLKRD---DSPTEQVGAPVAEGFGKVRHAVS 68

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL   ++ E++  F  RI ++   + D  + +T EPKIDG  +++RYE G  V AA R
Sbjct: 69  MLSLANAFDAEEVTDFDARIRKYLGVEADAPLAYTAEPKIDGLSLSLRYENGLLVQAATR 128

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+V+A  R I  IP  +    P+++EVRGEVY+S  DF ALN+     G K +A
Sbjct: 129 GDGAVGENVTANARTIQDIPHQIDE-APDLLEVRGEVYMSHADFAALNERQAERGGKTFA 187

Query: 215 NPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+      R L FF +  G  S   A+ Q   + ++  LGF  N    
Sbjct: 188 NPRNAAAGSLRQLDAEITRARPLRFFAYAWGALSAPLAETQKGAIDRLAKLGFVTNPLTA 247

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
             +    +V++Y ++++ R+TL YDIDG+VYKVD+ +LQ++LG R+ +PRW I+HKFA +
Sbjct: 248 LCDGPSDMVAHYAKIEAQRATLGYDIDGVVYKVDDLALQERLGFRSTTPRWAIAHKFAAE 307

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
            A TRL  IDIQ+GRTG L+PVARL+PV +GG +++NATLHNEDYIKGLD+ G  +RGG+
Sbjct: 308 LAWTRLEGIDIQVGRTGALSPVARLQPVTVGGVVVSNATLHNEDYIKGLDSKGAEIRGGK 367

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIRVGD V + RAG+VIPKV D+ +++R  DA PF FPS CP C S  +R+         
Sbjct: 368 DIRVGDWVQIYRAGDVIPKVADVDLSKRPKDAAPFVFPSVCPECGSDAIREPG------D 421

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
           A  RCTGGL C AQ +E+LKHFV+R AF+I+GLG +Q++ F+        I  PADIFTL
Sbjct: 422 AVRRCTGGLICPAQAVEKLKHFVARGAFDIDGLGAKQVEQFYHD----GWIAEPADIFTL 477

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           + R      +++N  G+G  S  NL+ +I  +R I + R IF+LGIRHVG   +  +A +
Sbjct: 478 KERFGNGVQQLKNREGWGPKSADNLFQAIKDKRKIPMSRLIFALGIRHVGDAASNLIALH 537

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           Y  + +F   +          W  LI V  VG ++A ++V  +       +++ L+  ++
Sbjct: 538 YGDWDSFETAMAEARGLEGPAWDDLIAVDGVGSVMAGSLVSAFAQEAERASIDRLVAHLT 597

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                      S +  K +VFTGTL+K+ R +A+    +LGA VS  +S KTDI++ G  
Sbjct: 598 VVPTERPDTEGSPVAGKTVVFTGTLEKMSRAEAKARAERLGAKVSGSVSAKTDILVAGPG 657

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK +KA  LG++ ++E+ +L L++
Sbjct: 658 AGSKAKKAADLGIETLDEDGWLALIE 683


>gi|307246220|ref|ZP_07528301.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307255203|ref|ZP_07537019.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259638|ref|ZP_07541362.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306852829|gb|EFM85053.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306861831|gb|EFM93809.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866283|gb|EFM98147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 682

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/707 (35%), Positives = 403/707 (57%), Gaps = 46/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR +  IP  L+  N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254
           F ALN+  +  G K +ANPRNAA+G LR+L+P     R L    +G+G  ++ +      
Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+        ++         S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKLEHTTLMRLERMGG------KSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ + +        +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  +
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGE 681


>gi|165976722|ref|YP_001652315.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190359223|sp|B0BQN6|DNLJ_ACTPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|165876823|gb|ABY69871.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 682

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/707 (35%), Positives = 402/707 (56%), Gaps = 46/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR +  IP  L+  N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254
           F  LN+  +  G K +ANPRNAA+G LR+L+P     R L    +G+G  ++ +      
Sbjct: 192 FETLNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+        ++         S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKLEHTTLMRLERMGG------KSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ + +        +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  +
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGE 681


>gi|284006788|emb|CBA72055.1| DNA ligase [Arsenophonus nasoniae]
          Length = 670

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/712 (35%), Positives = 401/712 (56%), Gaps = 46/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ +  L+ L+Q++ +H+  Y+    P I D+EYD L +    +    P+   +   + 
Sbjct: 1   MKEQQNYLARLKQQLRHHEYLYHVLDTPEIPDAEYDRLMQELKKLEAEHPEWITA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H IP LSL+ +++ E    F  R++   +  +++ + F  E K
Sbjct: 58  PTQRVGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRVHDRLK--NNSQLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A IR I  IP  L   NIPE IE+RGEV+
Sbjct: 116 LDGLAVSLLYEQGELVQAATRGDGTTGENITANIRTIRAIPLRLTGDNIPERIEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           ++   F  LN+E      K +ANPRNAA+G LR+L+P     R L FF +G G       
Sbjct: 176 MTHRGFEKLNEEARRNDGKIFANPRNAAAGSLRQLDPRITAKRPLAFFCYGFGLLAGGQL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ L + +  G PV++ +        +++YY++++  R  L +DIDG+V KVD   
Sbjct: 236 PASHYQCLMQFKKWGLPVSDKIALCQNSQQVLAYYHQIEHARLGLGFDIDGVVIKVDPLQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW  + KF  ++  T L D++ Q+GRTG +TPVARL PV + G +++N
Sbjct: 296 LQEELGFVARAPRWATAFKFPAQEQITLLHDVEFQVGRTGAITPVARLAPVLVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+++RAG+VIP++V+++ + R  D++   F
Sbjct: 356 ATLHNADEIERL-----------GVRIGDTVVIRRAGDVIPQIVNVLTDRRPIDSREIRF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+   LKHFVSR A +I+G+G + 
Sbjct: 405 PIHCPVCGSAIERIEGE------AVIRCTGGLICAAQRKGALKHFVSRRAMDIDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     +   AD++ L         ++      G  S  NL ++++K +  +L
Sbjct: 459 IDQLVAKE----YVTTAADLYRLNLDILARLERM------GPKSAQNLINALDKSKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI++LGIR VG   A +LA +Y +  +              D  SL +V  VG+I+A+
Sbjct: 509 ARFIYALGIREVGEATASNLAAHYTTLTSLMAA----------DIESLKKVQDVGEIVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            IV F+    N   V  L+ E+  S  R   K   S    K +V TGTL ++ R + ++ 
Sbjct: 559 HIVNFFHEQHNRDVVNQLVNEIGISWPRMPAKKTDSPFTGKTIVLTGTLNRLTRDELKDK 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +  LGA V+  +S+KTD++I G+  GSKL KA +LG+KI+NE++ + LL+ +
Sbjct: 619 LILLGAKVTGSVSKKTDLVIAGEAAGSKLTKANELGIKIINEDELIALLEDH 670


>gi|170733380|ref|YP_001765327.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
 gi|254781274|sp|B1JUF5|DNLJ_BURCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169816622|gb|ACA91205.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
          Length = 691

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/731 (35%), Positives = 395/731 (54%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L R    +  
Sbjct: 1   MARTQAEPPASQPDARA----AWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLET 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L     P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  DHPELV---TPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE+G FV AA RGDG +GEDV+  +R I +IP
Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L    +P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+     
Sbjct: 174 LKLKGKHVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L     LG PVN      +   G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGALLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLIDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                 L+ V  VG I+A+++ +F+    N   +E L        P      K     + 
Sbjct: 559 --SIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|170718864|ref|YP_001784038.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 2336]
 gi|254781341|sp|B0USD9|DNLJ_HAES2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168826993|gb|ACA32364.1| DNA ligase, NAD-dependent [Haemophilus somnus 2336]
          Length = 667

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 404/707 (57%), Gaps = 45/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L Q + +H+  Y+    P I DSEYD L  +  A+   +P+ A     N P  
Sbjct: 2   IKQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYA---SENSPTQ 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +   +  +V H IP LSL+  ++ ED   F+ RI         +S+ F  EPK+DG
Sbjct: 59  RVGAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRL-IHVHHSLTFCCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             ++I Y  G+ V AA RGDG +GED++A IR I  IP ++L+ N P  +EVRGEV++S+
Sbjct: 118 LAVSILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPTRLEVRGEVFMSQ 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI-FAKG 253
             F  LN   +A G K +ANPRNAA+G LR+L+P     R L    +G+G    +     
Sbjct: 178 AGFEKLNKTALAKGEKTFANPRNAAAGSLRQLDPKITGQRPLMLNAYGIGIAEGVELPDT 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +  LQ ++ +G PVNN ++  +    ++ +Y  +K  RS+L YDIDG V K+++  LQ+
Sbjct: 238 HFARLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQQ 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +++PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV + G  ++NATL
Sbjct: 298 QLGFISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L           DI +GD V+V+RAG+VIP+++ ++   R  +A+   FP+ 
Sbjct: 358 HNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPTN 406

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S + +          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ 
Sbjct: 407 CPVCDSVISKIEGE------AVARCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIEQ 460

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + E     +  PAD+F L +       ++         S  N   S+ K +  +L RF
Sbjct: 461 LVERE----LVHTPADLFKLDQVTLMRLERMGA------KSAENALASLAKAKKTTLARF 510

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG   A +LA ++ + + F           N  +  L +V  VG+++A+ I 
Sbjct: 511 IFALGIREVGETTALNLATHFKTLEAF----------ENATFEQLQKVQDVGEVVAKRIR 560

Query: 614 EFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F+  P N+  V+ L+ + +       ++   + ++ K +V TGTL K+ R +A+EY+ Q
Sbjct: 561 SFWSEPHNVAVVKDLIAQGIHWDNVEVKEVRDNPLKGKTVVLTGTLTKMGRSEAKEYLLQ 620

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LG  VS  +S KTD +I G++ GSKL KA +LG+ I++E +FL LL 
Sbjct: 621 LGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFLALLA 667


>gi|89900985|ref|YP_523456.1| DNA ligase [Rhodoferax ferrireducens T118]
 gi|123397178|sp|Q21WC8|DNLJ_RHOFD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89345722|gb|ABD69925.1| DNA ligase, NAD-dependent [Rhodoferax ferrireducens T118]
          Length = 690

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/712 (36%), Positives = 389/712 (54%), Gaps = 50/712 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L + +  H   YY    P I D+EYD + +   AI    P+L     P+ P  ++GG
Sbjct: 19  VAQLRRALHEHAHHYYVEDAPTIPDAEYDRMFQELQAIEAQHPELI---TPDSPTQRVGG 75

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDDNS-IFFTLEPKIDGT 137
                   V H++P LS+    + E    R F TR+ R     +    + +  EPK DG 
Sbjct: 76  RALEQFASVRHAVPMLSIRTETDTEASGARNFDTRVRRELGLDEAAPAVAYVAEPKFDGL 135

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + +RYE G  V AA RGDG  GEDV+  +R I  IP  L  + P I+EVRGEVY+ ++D
Sbjct: 136 AMNLRYESGILVQAATRGDGEVGEDVTQNVRTIGQIPLRLPADAPSILEVRGEVYMRRDD 195

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK-----TSEIFA 251
           F  LN++  A G+K + NPRNAA+G +R+L+P     R L+FF +GLG+           
Sbjct: 196 FEKLNEQQRARGQKTFVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGEVTPEQAGGPAF 255

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE+LQ ++  GFPV+  V  A     +V+YY  +   R  LP+DIDG+VYKV+  +L
Sbjct: 256 GTHYELLQALKTWGFPVSALVGLAQGATELVAYYESIARQRDALPFDIDGVVYKVNSLAL 315

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+++G   R PRW ++HKF  ++  T +LDID+Q+GRTG LTPVA+L PV +GG  +TNA
Sbjct: 316 QRRMGFVTREPRWAVAHKFPAQEQFTTVLDIDVQVGRTGKLTPVAKLAPVFVGGVTVTNA 375

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED  +            +D+RVGD V+V+RAG+VIP+VV +++++R P A  F+ P
Sbjct: 376 TLHNEDEARR-----------KDVRVGDTVIVRRAGDVIPEVVSVLLDKRQPGATEFTMP 424

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S  VR+           +RCTGGL CSAQ+ + + HF  R A  +EGLG++ +
Sbjct: 425 RQCPVCGSAAVREEGE------VDYRCTGGLFCSAQRKQAILHFAQRRAVEVEGLGEKLV 478

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D           IRI  D++ L        T + ++    D S  N+  ++ K +  +L 
Sbjct: 479 DQLVD----GHVIRILPDLYRL------GLTALASLDRMADKSAQNILQALEKSKQTTLP 528

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+F LGIRHVG   A+ LA+++ S            A  +     L++V  +G I+AQ+
Sbjct: 529 RFLFGLGIRHVGEATAKELARHFGSLD----------AVMDASLEQLLQVNDIGPIVAQS 578

Query: 612 IVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +  F+  P N   VE      V+   G       + +  K  V TGTL  + R +A++ +
Sbjct: 579 LRTFFDQPHNREVVEQLRACGVTWQEGPPAPVTPTPLSGKTFVITGTLPSMSRDEAKDLI 638

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              G  V+  +S+KT  ++ G   GSKL KAQ+LGV +++E     LL  ++
Sbjct: 639 EAAGGKVAGSVSKKTTFVVAGTEAGSKLTKAQELGVAVLDEAGLKELLDGHS 690


>gi|219850499|ref|YP_002464932.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485]
 gi|254781282|sp|B8GAC1|DNLJ_CHLAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219544758|gb|ACL26496.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485]
          Length = 681

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/715 (36%), Positives = 387/715 (54%), Gaps = 55/715 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + ++ L   I  +D  YY    PI+ D+EYDAL     A+  A P+L     P+ P  ++
Sbjct: 8   QRINELRTLIRRYDYHYYVLDDPIVSDAEYDALMNELRALEAAHPELI---TPDSPTQRV 64

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
            G       KV H  P LSL   +   DL  +  R+ R   +  D ++ + +EPKIDG  
Sbjct: 65  SGTPASQFAKVQHPQPMLSLGNAFTTTDLLAWRDRVLRLLGQ--DTAVAYVVEPKIDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----------IPEIIEV 187
           + + Y  G+FV  A RGDG  GEDV+A +R I +IP +L              +P +IEV
Sbjct: 123 VALTYHDGQFVQGATRGDGEVGEDVTANLRTISSIPLLLHPPDGGHDRDVPTALPSLIEV 182

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+   DF ALND + A G K +ANPRNAA+G LR+ +P     R L FF +G+G  
Sbjct: 183 RGEVYMRTADFEALNDRLAAAGEKIFANPRNAAAGSLRQKDPAITAARPLRFFAYGVGPV 242

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             +   GQ++ L+ +R LGFPVN  VR+   F  +++Y  +  + R  L Y+ DG+V K+
Sbjct: 243 EGVELTGQWQTLRYLRMLGFPVNQDVRRFTDFDEVLAYCEQWMARRDELTYEADGMVIKI 302

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+F+ Q++LG   R PRW I+ KF  ++A TRLL+I + +GRTG++TP A LEPV IGG 
Sbjct: 303 DDFAQQRELGVVGRDPRWAIAFKFPPREAITRLLNITVNVGRTGVVTPNAELEPVQIGGV 362

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NA+LHN DYI             RDIR+GD V+VKRAG+VIP VV  +V  R    +
Sbjct: 363 IVRNASLHNADYI-----------AQRDIRIGDYVIVKRAGDVIPYVVGPVVARRDGSER 411

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP+ CP C S + R+         AA RC     C AQ + RL+HF SR A +I GL
Sbjct: 412 PWQFPTHCPACGSPLEREPGE------AAWRCNNFGICPAQLVRRLEHFASRAALDIVGL 465

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++Q + F +       +R  AD+F L+              GFG   + NL ++I+  R
Sbjct: 466 GERQAELFVQR----GLVRDVADLFYLKAEDFAGLE------GFGPKRIANLLNAIDAAR 515

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L+R I  LGIR+VG+  A++L     S           +           ++P +G 
Sbjct: 516 QRPLDRLIVGLGIRYVGSVAAQALVNSLGSLDAIMNARQEELE----------QIPGIGP 565

Query: 607 IIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++A +IV+F+ +P N   +E L    V  + G   +  S  +  +  V TGTL  + R +
Sbjct: 566 VVAASIVDFFAHPENRQLIEKLRAAGVQMNAGPQRERKSDVLAGQTFVLTGTLPSLTREQ 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A   +   G  V+  +S+KT+ ++ G N GSKL KAQQLG+ +++E   L L+ +
Sbjct: 626 ASALIIAHGGKVTDSVSKKTNYVVAGVNAGSKLAKAQQLGIPVLDEAALLALIGE 680


>gi|27381702|ref|NP_773231.1| DNA ligase [Bradyrhizobium japonicum USDA 110]
 gi|81735382|sp|Q89FV8|DNLJ_BRAJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|27354871|dbj|BAC51856.1| DNA ligase [Bradyrhizobium japonicum USDA 110]
          Length = 716

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/721 (42%), Positives = 451/721 (62%), Gaps = 13/721 (1%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K + L  +  L+  QA+ EL  L  E+  HD  YYQ   P + D+EYDAL++R +AI   
Sbjct: 7   KSKPLRDVAELTKAQAKVELMRLALELEGHDKRYYQDDAPTVTDAEYDALRQRFNAIEKR 66

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+   +E    P  K+G   +    KV H++P LSL+  +  ED+R F+ RI RF  K 
Sbjct: 67  FPEFVSAE---SPSQKVGAAPSGRFRKVRHAVPMLSLDNAFAEEDVRDFVGRIVRFL-KL 122

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180
           DD+ I F+ EPKIDG  +++RYE G+ V AA RGDG  GEDV+A IR +  +P+ L   N
Sbjct: 123 DDDKIDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLEDVPQKLKGRN 182

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P+I EVRGEVY++K  FLALN+   A G   +ANPRN+A+G LR+ +PT   +R L FF
Sbjct: 183 VPDICEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPLGFF 242

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ S +  + Q  M+      GF  N   R  ++   +++++  ++  R+ L YDI
Sbjct: 243 AYAWGEMSAMPEETQTGMIHWFERCGFKTNPLTRLCHSVEELIAFHQRIEEERAELDYDI 302

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +R+PRW I+HKF  +QA T L DI+IQ+GRTG  TPV +LE
Sbjct: 303 DGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAEQAMTVLRDIEIQVGRTGSFTPVGKLE 362

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ N TLHNEDYIKG+   G+V+R GRDIR+GD V+++RAG+VIP+VVD++++
Sbjct: 363 PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVLD 422

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   A+ F FP  CP      V       G+  +  RCTG  AC  Q++E LK FVSR 
Sbjct: 423 KRPKTAKEFHFPKTCPCPLHTDVTREETAAGEEGSRARCTGEFACPYQKIEHLKLFVSRR 482

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++QL +FF        ++ PADIFTL++R   +  K+E I G+G  SV NL+
Sbjct: 483 AFDIDGLGEKQLQYFFDE----GFVKEPADIFTLEKRN--AKLKLEEIEGYGATSVRNLF 536

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I  RR I+LERF+++LG+RHVG   A +LA+ Y S++ F      +   + +    + 
Sbjct: 537 AAIESRRRIALERFVYALGMRHVGETTALALARGYGSWEAFHDACLKVAKGDEEAMADMD 596

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  +GD + ++I +++    N   VE L KEV   +   +   +S +  K +VFTG+L+
Sbjct: 597 ALDQIGDTVIKSIADYFGESHNRGIVERLTKEVEI-VDAEKPKSNSAVAGKTVVFTGSLE 655

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           K+ R +A+    +LGA VS  +S+KTD+++ G   GSKL +A + GVK++ E+++L L+ 
Sbjct: 656 KMTRDEAKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLKLIG 715

Query: 720 Q 720
           +
Sbjct: 716 E 716


>gi|170703080|ref|ZP_02893902.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
 gi|170132009|gb|EDT00515.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
          Length = 691

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/731 (35%), Positives = 395/731 (54%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L      +  
Sbjct: 1   MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLET 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GGE+      V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  DHPDLV---TPDSPTQRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP
Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L   ++P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P    
Sbjct: 174 LKLKGAHVPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L      G PVN          G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGALLDRRPDDAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IE 648
                 L+ V  VG I+A++I +F+    N   +E L      +         +    + 
Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E++   LL+
Sbjct: 677 LDEDELHQLLE 687


>gi|152979719|ref|YP_001345348.1| NAD-dependent DNA ligase LigA [Actinobacillus succinogenes 130Z]
 gi|190359224|sp|A6VR16|DNLJ_ACTSZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150841442|gb|ABR75413.1| DNA ligase, NAD-dependent [Actinobacillus succinogenes 130Z]
          Length = 672

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/713 (36%), Positives = 403/713 (56%), Gaps = 45/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +++ L   + +H+  Y+    P I DSEYD L  R  A+    P+L      + 
Sbjct: 1   MTDIQNQINQLRNTLRHHEYQYHVLDNPEIPDSEYDRLFHRLKALEQQHPELI---SADS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++TH +P LSL+ +++ E+   F+ RI        DN + F  EPK
Sbjct: 58  PTQRVGAKPLAGFAQITHELPMLSLDNVFSDEEFYAFVKRIQERLITLPDN-LEFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I YE G+ V AA RGDG +GED++  IR I  IP ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYENGRLVQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPVRLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           + +  F  LN+  +A G K +ANPRNAA+G LR+L+P   + R L +  + +G       
Sbjct: 177 MPQEGFDRLNEAALARGEKTFANPRNAAAGSLRQLDPKITSQRPLVWNAYSIGIAEGADL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE LQ ++ +G PVN  +R       ++ +Y  ++  R  L YDIDG V KV+E +
Sbjct: 237 PPTHYERLQWLKSIGIPVNGEIRLCRGAENVLKFYRTIQEKRPELGYDIDGTVLKVNEIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L+PV + G  ++N
Sbjct: 297 LQERLGFISKAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L           DI +GD V+V+RAG+VIP+++ ++ + R P+A+P  F
Sbjct: 357 ATLHNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVVHDRRPPNAEPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S +VR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTLCPVCHSAIVRIEGE------AVARCTGGLFCDAQRKESLKHFVSRRAMDIDGVGAKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     IR PAD+F L         ++      G+ S     DS+ K +  +L
Sbjct: 460 IEQLVDRE----LIRTPADLFKLDLITLMRLERM------GEKSAQKALDSLEKAKKTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++           N+ A    D   L  V  VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANFF----------KNLTALQTADLEQLQAVSDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   NI  V  L+ +        EK V  +  + K +V TGTL ++ R++A+  
Sbjct: 560 RIYVFWREQHNIDVVNDLIAQGVHWDDVEEKQVNENPFKEKTVVLTGTLSQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + Q+GA V+  +S KT I+I GD+ GSKL KAQ LGV +M+E +FL ++  ++
Sbjct: 620 LQQMGAKVAGSVSAKTHIVIAGDSAGSKLSKAQDLGVAVMSEAEFLEIVNSFS 672


>gi|292491548|ref|YP_003526987.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
 gi|291580143|gb|ADE14600.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
          Length = 675

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/712 (36%), Positives = 395/712 (55%), Gaps = 47/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            QAR+ + +L + I+ ++  YY    P++ DSEYD L R    +   +P+L     P+ P
Sbjct: 5   AQARERVETLRKLINDYNYNYYVLDSPVVPDSEYDRLMRELQNLEAQYPELVV---PDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G E   +L +V H IP LSL   ++ E+L  F  R+           + +  EPK+
Sbjct: 62  TQRVGAEPLKALGEVKHEIPMLSLNNAFSEEELADFHRRVKERLG---IEQVEYAAEPKL 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  +++ Y++G  V  A RGDG +GEDV+  +R IPT+   L  + IP ++EVRGEVY+
Sbjct: 119 DGLAVSLLYQEGILVQGATRGDGVTGEDVTHNVRTIPTVSLHLRGDKIPSLLEVRGEVYM 178

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS-EIFA 251
            K  F  LN E +A G K + NPRNAA+G LR+L+P     R L  F +G+GK       
Sbjct: 179 PKEGFERLNREHLAKGEKTFVNPRNAAAGSLRQLDPRIAASRPLAIFCYGVGKVEQGTLP 238

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +   E+L +++  G      V       G   YY  +   R  LPY+IDG+V+KVD F  
Sbjct: 239 QRHSEVLARLKQWGLRTPPHVEVVAGLAGCQEYYQRLLERRDGLPYEIDGVVFKVDRFDQ 298

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ LG  AR+PRW I++KF  ++  T++LDI++Q+GRTG LTPVARL+PV +GG  ++NA
Sbjct: 299 RQALGFVARAPRWAIAYKFPAQEELTQILDIEVQVGRTGALTPVARLQPVFVGGVTVSNA 358

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED I+            +D+R+GD V V+RAG+VIP+VV +I++ R PDA+ F  P
Sbjct: 359 TLHNEDEIRR-----------KDVRIGDTVYVRRAGDVIPEVVKVILDHRPPDARFFQMP 407

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CPIC S V++D      +  A  RC+GGL C AQ+ E +KHF SR A +I GLG + +
Sbjct: 408 TQCPICGSEVIKD------EGGAIARCSGGLYCPAQRKEAIKHFASRRAMDINGLGDKLV 461

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D   + E     +   AD++ L   Q     ++         S  NL  +I   ++ +L 
Sbjct: 462 DQLIERE----LVEDVADLYHLTAEQLAGLERMGQ------KSAANLMHAIEASKHTTLP 511

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+++LGIR VG   A++LA+ + S +         +            V  +G ++A  
Sbjct: 512 RFLYALGIREVGEATAQALAEEFNSLEALEGASEERLQ----------EVTDIGPVVATH 561

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I  F++ P N   ++ L +       +  +K +   +  K  V TGTL+ + R +A+E +
Sbjct: 562 IAAFFRQPHNRQVIQRLREAGVCWPEKEGKKPIPQPLSGKTFVLTGTLESMTREQAKERL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LG  V++ +S  TD ++VG NPGSKL KA+ L + +++E  F  LL + +
Sbjct: 622 QALGGKVTSSVSSNTDYLVVGTNPGSKLTKAKDLHITLLDEGNFRNLLDEAS 673


>gi|90418183|ref|ZP_01226095.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337855|gb|EAS51506.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1]
          Length = 703

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/712 (41%), Positives = 441/712 (61%), Gaps = 20/712 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L  ++A  EL  L  EI+ HD  YY+   P + D+EYD L+RR  AI   FP+L R 
Sbjct: 6   VETLDRDEAAAELERLAGEIAAHDRAYYREDAPTVTDAEYDTLRRRNAAIEARFPELIRE 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P+    ++G E++    K+ H++P LSL+  ++ ED+  F  R+ RF +  DD  +  
Sbjct: 66  DSPSA---RVGTEVSEKFGKIRHAVPMLSLDNAFSDEDVADFAKRVRRFLKLDDDAPLAI 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYEKG+ V AA RGDG +GEDV+   R I  IP  L    PE+ EVR
Sbjct: 123 TAEPKIDGLSLSLRYEKGELVSAATRGDGATGEDVTRNARTIDDIPNRLKGKAPEVFEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GEVY+S   F  LN      G+  YANPRNAA+G LR+L+      R L FF +  G+ S
Sbjct: 183 GEVYMSHAAFTDLNARQAEEGKPVYANPRNAAAGSLRQLDAGITRARKLQFFAYAWGEAS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+  + Q E++  +   GFPVN  +++  T  G++++Y+ ++  R+ L YDIDG+VYKVD
Sbjct: 243 EVPGETQTEVVAAIAGFGFPVNERMKRFETIEGLIAHYHAIEENRAGLGYDIDGVVYKVD 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQK+LG  +RSPRW I+HKF  +QA+T L  I+IQ+GRTG LTPVA+L+PVN+GG +
Sbjct: 303 DLALQKRLGFVSRSPRWAIAHKFPAEQATTVLRAIEIQVGRTGALTPVAKLDPVNVGGVM 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           + NATLHN + I+ L           D+RVGD V ++RAG+VIP+V+ I+ ++R  DA+P
Sbjct: 363 VANATLHNAEEIERL-----------DVRVGDTVQIQRAGDVIPQVLGIVADKRPEDAEP 411

Query: 428 FSFPSFCP-ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           F+FPS CP   ++ VVR+    +G      RCTG  AC  Q+ E LK FVSR AF+IEGL
Sbjct: 412 FAFPSVCPCELKTDVVREET-ASGAQSVVRRCTGEFACPFQRREHLKLFVSRKAFDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+D F+    P F +R PADIF +  R Q    K+++  GFG+VS  NL+ +I  RR
Sbjct: 471 GDKQIDLFYDD--PDFQVRTPADIFRMHGRNQEGLKKLKDKEGFGEVSAKNLFAAIEARR 528

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I L+R IFSLGIRHVG   A++LA+ Y +++ F +    + A + +    +  +  +G 
Sbjct: 529 TIPLDRLIFSLGIRHVGETTAKTLARAYGTFEAFHEAALKVAAGDEEASGEMDALDDIGG 588

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  A   F+    N+  VE L+ E+           +S +  + +VFTG+L+K+ R +A
Sbjct: 589 AVITATARFFSEDHNLKLVEDLVAELDVQPAEQPA-ATSPVSGQTIVFTGSLEKMTRDEA 647

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTD+++ G   GSKL+KA +LGV++++E+ +   +
Sbjct: 648 KAMAEGLGAKVAGSVSKKTDLVVAGPGAGSKLKKAAELGVEVIDEDAWFVRI 699


>gi|251793989|ref|YP_003008721.1| NAD-dependent DNA ligase LigA [Aggregatibacter aphrophilus NJ8700]
 gi|247535388|gb|ACS98634.1| DNA ligase, NAD-dependent [Aggregatibacter aphrophilus NJ8700]
          Length = 671

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/707 (35%), Positives = 400/707 (56%), Gaps = 45/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L + + YH+  Y+   +P I DSEYD L  +  A+    P L  +   + P  
Sbjct: 5   IQQQIDDLRKTLRYHEYQYHVLDEPQIPDSEYDRLFHQLKALEQQHPALITA---DSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G        ++ H +P LSL+  ++ E+   F+ RI           + F  EPK+DG
Sbjct: 62  RVGARPLSEFAQIKHELPMLSLDNAFSDEEFLAFVKRIQDRL-VFAPEPLTFCCEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             ++I Y  G    AA RGDG +GED++  IR I  IP ++L+ N P  +EVRGEV++  
Sbjct: 121 LAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPH 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKG 253
           + F  LN+  +  G K +ANPRNAA+G LR+L+P   + R L F  + +G    I     
Sbjct: 181 DGFERLNERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQRIDLPPT 240

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E LQ ++ +G PVN+ +R  +    ++++Y  M   RS+L YDIDG V KV++  LQ+
Sbjct: 241 HFERLQWLKSIGVPVNSEIRLCDGIENVLNFYRTMMEKRSSLGYDIDGTVLKVNDIELQQ 300

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L+PV + G  ++NATL
Sbjct: 301 RLGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNATL 360

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L+           I +GD V+++RAG+VIP+++ ++ + R  +A+   FP+ 
Sbjct: 361 HNGDEIERLN-----------IAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQIVFPTH 409

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A NI+G+G + ++ 
Sbjct: 410 CPVCDSLIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMNIDGVGAKLIEQ 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD+F L        T I  +   G  S  N   S+ K ++ +L RF
Sbjct: 464 LVDRE----LVHTPADLFKL------DLTTITRLERMGPKSAENALASLEKAKHTTLARF 513

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG  IA +LA ++ + +          A  N D   L +VP VG+++A  I 
Sbjct: 514 IFALGIRDVGEAIALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 563

Query: 614 EFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F++   N+  V  L+ + V       ++   +  ++K +V TGTL ++ R+ A+  + Q
Sbjct: 564 VFWREEHNVAVVNDLIAQGVHWETVEVQEVKENPFKDKTVVLTGTLSQMGRNDAKVLLQQ 623

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LGA VS  +S KTD +I G+  GSKL KA +LGV++++EE+F   + 
Sbjct: 624 LGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFWAWVN 670


>gi|253988889|ref|YP_003040245.1| NAD-dependent DNA ligase LigA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780339|emb|CAQ83500.1| DNA ligase [Photorhabdus asymbiotica]
          Length = 672

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/714 (34%), Positives = 394/714 (55%), Gaps = 49/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++ +L + + +H+  Y+    P I D+EYD L +    +    P+L  S   + 
Sbjct: 1   MKSTAQQIENLRKTLRHHEYLYHVMDAPEISDAEYDRLMQELKTLEGQHPELITS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H IP LSL+ +++ E    F  R+    +  D   +    E K
Sbjct: 58  PTQRVGAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLK--DTQDLVVCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE++++ +R I  +P  L   NIP  IEVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITSNVRTINAVPLRLIGENIPARIEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +N F  LN+E    G K +ANPRNAA+G LR+L+P     R L F  +G+G       
Sbjct: 176 MPQNGFEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFLCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE L + +  G PV++ VR     + ++ +Y  +++ RSTL +DIDG+V KV+   
Sbjct: 236 PASHYERLMQFKKWGLPVSDKVRVCTDSNQVIDFYRNIENQRSTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  AR+PRW  + KF  ++  T + DI+ Q+GRTG +TPVARLEPV + G  ++N
Sbjct: 296 LQETLGFVARAPRWATAFKFPAQEQMTIVRDIEFQVGRTGAITPVARLEPVQVSGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+++RAG+VIP+VV ++ + R  D+    F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIIRRAGDVIPQVVGVVEDRRPQDSDEVIF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P +CP+C + + +          A  RCTGGL C AQ+ E L+HFVSR A +++G+G++ 
Sbjct: 405 PEYCPVCGADIEKIEGE------AVARCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     +  PAD+F L   + T   ++      G  S  N+ D++ K +  + 
Sbjct: 459 IDQLVDKE----YVETPADLFRLTAGKLTGLDRM------GPKSAQNVVDALEKAKKTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA Y+                   D  +L  V  VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAYFGDLNKLRAA----------DEEALKEVQDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +V F+  P N   ++ L+  +     P      + + S    K +V TG+L ++ R +A
Sbjct: 559 HVVHFFNEPHNQKVIDDLIDNIGINWEPIAVTKAEKIDSPFAGKTIVLTGSLHQLSRDEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +  LGA V+  +S+KTD++I G+  GSKL KA +L + +++EE+ + LL +
Sbjct: 619 KDKLIALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIAVIDEEEMIRLLGE 672


>gi|300724062|ref|YP_003713378.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
 gi|297630595|emb|CBJ91260.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
          Length = 658

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/700 (34%), Positives = 384/700 (54%), Gaps = 49/700 (7%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + +H+  Y+    P I D+EYD L R   A+    P+   +   + P  +IG     +  
Sbjct: 1   MRHHEYLYHVMDAPEIPDAEYDRLMRELKALEEQHPEWVTA---DSPTQRIGATPLSAFE 57

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           +V H IP LSL+ +++ E    F  R+    +  D     F  E K+DG  +++ YE G+
Sbjct: 58  QVRHEIPMLSLDNVFDEESYLAFDKRVRDRLK--DSQDWVFCCELKLDGLAVSLLYENGE 115

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMI 206
            V AA RGDG +GE+++A +R I  IP  L   NIP  +E+RGEV+I +  F  LN+E  
Sbjct: 116 LVQAATRGDGTTGENITANVRTIHAIPLRLKGENIPARVEIRGEVFIKQTGFEKLNEEAR 175

Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCL 264
             G K +ANPRNAA+G LR+L+P     R L F+ +G+G           Y  L + +  
Sbjct: 176 RTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGIGVQEGGALPASHYARLMQFKEW 235

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G PV++ V+       ++ +Y +++  R TL +DIDG+V KVD   LQ++LG  A++PRW
Sbjct: 236 GLPVSDKVKLCLGTQQVIDFYQDIEQQRPTLGFDIDGVVVKVDSLELQERLGFVAKAPRW 295

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             + KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G  ++NATLHN D I+ L  
Sbjct: 296 ATAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVSVAGVTVSNATLHNADEIERL-- 353

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                     +R+GD V+++RAG+VIP+VV +I   R  ++    FP  CP+C S + R 
Sbjct: 354 ---------GLRIGDTVIIRRAGDVIPQVVGVIHERRPAESLEVIFPQHCPVCGSDIERV 404

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                    A  RCTGGL C AQ+ E L+HFVSR A +++G+G++ ++     E     +
Sbjct: 405 EGE------AVARCTGGLFCGAQRKEALRHFVSRRAMDVDGMGEKIIEQLVDKE----YV 454

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           + PAD+F L   + T   ++      G  S  N+ +++ K R  +  RFI+SLGIR VG 
Sbjct: 455 KTPADLFRLTAGKLTGLERM------GPKSAQNVINALEKARKTTFARFIYSLGIREVGE 508

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A +L  ++ + +               D  +LI V  VG I+A  +V F+  P N   
Sbjct: 509 TTAANLVSHFGTLEKLQAA----------DTEALIAVQDVGGIVASHVVNFFNEPHNQAV 558

Query: 625 VEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           ++ L+  +       E      +      K +V TG+L ++ R +A++ +  LGA V+  
Sbjct: 559 IDDLVNNIGIHWESAESPNLGEIDGPFAGKTVVLTGSLNRLSRDEAKDKLAALGAKVTGS 618

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +S+KTD++I G+  GSKL KA +LG+ +++E++ + LL++
Sbjct: 619 VSKKTDLVIAGEAAGSKLAKANELGIPVIDEDEMIRLLRE 658


>gi|240142614|ref|YP_002967127.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
 gi|240012561|gb|ACS43786.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
          Length = 712

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/716 (42%), Positives = 447/716 (62%), Gaps = 16/716 (2%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           + +P+  LS E AR E ++L  EI+ HD+ Y+    PI+ D+EYDAL+RR   I  A P 
Sbjct: 8   RAVPVAELSNEDARIEHAALASEIAEHDERYHGQDAPIVTDAEYDALRRRAAEIEAAHPA 67

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           LA   +      K+G + +    K+ H+IP LSLE  +  ED+ +F  RI RF       
Sbjct: 68  LAAESEVA---KKVGAKPSSRFGKIVHAIPMLSLENAFVDEDVAEFAVRIRRFLDLPGGA 124

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + FT EPKIDG  ++IRYE  + V+AA RGDG +GE+V+A    I  IP  L  + P++
Sbjct: 125 PLAFTAEPKIDGLSLSIRYENRRLVHAATRGDGAAGENVTANALTIQDIPDDLPRDAPDV 184

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEVY+SK+ F A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  
Sbjct: 185 VEIRGEVYLSKSAFAAINARQEAAGKPLFANPRNAAAGSLRQLDPKITASRPLKFFAYSW 244

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+TS   A+ Q+  L +    GF VN   +  +T   ++  Y  + ++R+ L YDIDG+V
Sbjct: 245 GETSAPIAEAQHAALARFDDWGFYVNPLTKLCSTVEEMLEVYRAIGAMRADLEYDIDGVV 304

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+ +LQ++LG  +R+PRW ++HKF  +QA T L  I+IQ+GRTG LTPVA+L P+ +
Sbjct: 305 YKVDDLALQRRLGFVSRAPRWAVAHKFPAQQAETVLEAIEIQVGRTGSLTPVAKLRPLTV 364

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++NATLHNEDYIKGLD+ G+ +R GRD+RVGD V+V+RAG+VIP++VD+  ++R  
Sbjct: 365 GGVVVSNATLHNEDYIKGLDSDGQPIREGRDLRVGDHVIVQRAGDVIPQIVDVDPSKRSE 424

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
              P+ FP  CP+C S  VR+ NPK+G+  +  RCTGGL C AQ +ER+KHF SR A +I
Sbjct: 425 GTAPYEFPKLCPVCGSHAVREANPKSGREDSVRRCTGGLICQAQAVERIKHFASRGAMDI 484

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG ++++ F + +     +R P+DIFTL+RRQ      +    G G  SV NL+ +I+
Sbjct: 485 EGLGDERIEDFHRDD----LLRTPSDIFTLRRRQDAGEIDLTAREGMGPTSVANLFAAID 540

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR-VP 602
            RR + LER I  LGIRHVG   A+ LAK Y S     +      A   D    ++  + 
Sbjct: 541 ARRKVPLERLIHGLGIRHVGETNAKLLAKAYRSLPAVREA-----AQVPDALKRMVDLIN 595

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G ++A A+VEF+  P N   V+ LL EV  +     K   S +  K +VFTG+L ++ 
Sbjct: 596 GIGPVVAAAVVEFFLEPHNSEEVDRLLAEVGTTAPAAAK--ESPVTGKTIVFTGSLVRMS 653

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+     LGA  +  +S+KTD+++ G   GSKL KA+Q GV++++E  +  L+
Sbjct: 654 RDEAEAMAEGLGARTAGTVSKKTDLVVAGPGAGSKLAKAEQFGVRVIDENGWFDLV 709


>gi|322513636|ref|ZP_08066733.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
 gi|322120561|gb|EFX92462.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
          Length = 681

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/720 (35%), Positives = 405/720 (56%), Gaps = 51/720 (7%)

Query: 9   IEALSIEQARK-----ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           +  LS  QA+      +L +L Q++  ++  Y+    P++ D+EYD L      +    P
Sbjct: 1   MPLLSQMQAQADTTFAQLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHP 60

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +   +   + P  ++G +      +VTH IP LSL+  ++ EDL  F+ R+  +  +   
Sbjct: 61  EWITA---DSPTQRVGAKPLDGFAQVTHEIPMLSLDNAFSDEDLDSFLRRMESYISENPL 117

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIP 182
            S+ F  EPK+DG  ++I Y  G    AA RGDG +GED+++ IR I  IP  L+  N P
Sbjct: 118 -SLAFCCEPKLDGLAVSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVH 241
             +EVRGEV++ +  F  LN+  +    K +ANPRNAA+G LR+L+P     R L    +
Sbjct: 177 ARLEVRGEVFMPQKGFEELNERALEKSEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAY 236

Query: 242 GLG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           G+G  ++ +      +E LQ ++ +G PVNN +R       ++++Y ++++ R TL YDI
Sbjct: 237 GIGVYESDDELPATHFERLQWLKSIGIPVNNEIRLVTGHEQLLAFYADIQAKRPTLGYDI 296

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG V KV++  LQ+QLG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LE
Sbjct: 297 DGTVLKVNDIGLQEQLGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLE 356

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++NATLHN D I+ L            I +GD V+++RAG+VIP++V +++ 
Sbjct: 357 PVFVAGVTVSNATLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVME 405

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R  +A+   FP+ CP+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR 
Sbjct: 406 RRPENAEKIEFPTACPVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRK 459

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I+G+G++ ++     E     +  PAD+F L         ++      G  S  N  
Sbjct: 460 AMDIDGVGEKLIEQLMDRE----LVHTPADLFKLDHTTLMRLDRM------GKKSAQNAL 509

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           +SI K +N +L RF+F+LGIR VG   A++LA ++ + +                +  L 
Sbjct: 510 NSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLEAIRMAT----------FEQLQ 559

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
            V  VG+++A  IV F+Q P N+  VE L+ + V        +   + ++ K +V TGTL
Sbjct: 560 EVQDVGEVVANRIVRFWQEPHNVAVVEDLIAQGVYWQDVVQVEIADNPLKGKNVVLTGTL 619

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            ++ R +A+  +   G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++ + L+
Sbjct: 620 TQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQELVDLM 679


>gi|78066803|ref|YP_369572.1| DNA ligase (NAD+) [Burkholderia sp. 383]
 gi|123742568|sp|Q39F38|DNLJ_BURS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77967548|gb|ABB08928.1| DNA ligase (NAD+) [Burkholderia sp. 383]
          Length = 691

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/731 (35%), Positives = 393/731 (53%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L R    +  
Sbjct: 1   MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLET 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L     P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  DHPELV---TPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALDK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D        + +  E K DG  I++RYE+G FV A+ RGDG +GEDV+  +R I +IP
Sbjct: 114 TTDLAGSVTEPVEYACELKFDGLAISLRYEQGVFVQASTRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L    +P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+     
Sbjct: 174 LKLKGKHVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L     LG PVN          G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGMPMLDTHSALLDWYESLGLPVNREREVVQGAEGLLGFFRKIGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGALLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
                 L+ V  VG I+A+++ +F+    N   +E L        P      K     + 
Sbjct: 559 --SIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLVKAEELGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|115352108|ref|YP_773947.1| DNA ligase [Burkholderia ambifaria AMMD]
 gi|122322835|sp|Q0BE10|DNLJ_BURCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115282096|gb|ABI87613.1| DNA ligase, NAD-dependent [Burkholderia ambifaria AMMD]
          Length = 691

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/731 (35%), Positives = 394/731 (53%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    +A    + L  ++   +  YY   +P + D+EYD L      +  
Sbjct: 1   MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLET 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GGE+      V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  DHPDLV---TPDSPTQRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP
Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L   ++P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P    
Sbjct: 174 LKLKGAHVPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L      G PVN          G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGALLDRRPDDAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648
                 L+ V  VG I+A++I +F+    N   +E L      +        +     + 
Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPRAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|260581847|ref|ZP_05849643.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
 gi|260095040|gb|EEW78932.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
          Length = 679

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/709 (35%), Positives = 400/709 (56%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 10  MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 67  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 126 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 246 PTTHYACLQWLKSIGIPVNPEIRLCNGADEVLDFYRDIQNKRSSLGYDIDGTVLKINDIA 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 366 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 415 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+ K ++ +L
Sbjct: 469 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGVKSAENALNSLEKAKSTTL 518

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +            A    D   L +VP VG+++A 
Sbjct: 519 ARFIFALGIREVGEATALNLANHFKTLD----------ALKAADLDQLQQVPDVGEVVAN 568

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 569 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 629 LQQLGAKVSGSVSNKTDFVIAGDAAGSKLAKAQELNIAVLTEEEFLAQI 677


>gi|68057854|gb|AAX88107.1| DNA ligase [Haemophilus influenzae 86-028NP]
          Length = 679

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 402/709 (56%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 10  MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 67  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 126 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    I  
Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGIDL 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 246 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 366 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 415 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 469 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 518

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+++A 
Sbjct: 519 DRFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 568

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 569 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 629 LQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVLTEEEFLAQI 677


>gi|229843861|ref|ZP_04464002.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
 gi|229812855|gb|EEP48543.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
          Length = 670

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/711 (35%), Positives = 400/711 (56%), Gaps = 45/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + ++++L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTKINNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIHHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG  GED++A IR I  IP ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYINGVLTQAATRGDGTIGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+ K ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGVKSAENALNSLEKAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +            A    D   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLD----------ALKEADLDQLQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  + +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLVKAQELNITVLTEEEFLAQITK 670


>gi|242238286|ref|YP_002986467.1| NAD-dependent DNA ligase LigA [Dickeya dadantii Ech703]
 gi|242130343|gb|ACS84645.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech703]
          Length = 684

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/728 (35%), Positives = 404/728 (55%), Gaps = 52/728 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +++ +P+   S   A  ++ +L  ++ YH+  Y+    P I D+EYD L      +  
Sbjct: 1   MSEKKPMPMNDTSA--AAVQIDALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKLLEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A P+   S   + P  ++G         V H +P LSL+ +++ E  + F+ RI    + 
Sbjct: 59  AHPEWVTS---DSPTQRVGATPLAGFDNVQHEVPMLSLDNVFDAESFQAFVKRIGDRLKS 115

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
             D ++ F  E K+DG  +++ YE G  V AA RGDG +GE++++ IR I  IP  L   
Sbjct: 116 --DEALRFCCELKLDGLAVSLLYEDGVLVRAATRGDGSTGENITSNIRTIGAIPLRLRGD 173

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           NIP  +EVRGEV++    F ALN+E    G K +ANPRNAA+G LR+L+P     R L F
Sbjct: 174 NIPRRLEVRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTF 233

Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           F +G+G           ++ L + R  G PV++ +R       ++++Y  ++++R TL +
Sbjct: 234 FCYGVGLMEGGSLPDSHWQRLMQFREWGLPVSDRIRLCTGGDEVLAFYQHVEAVRDTLGF 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V KVD+ +LQ++LG  AR+PRW ++ KF  ++  T L D++ Q+GRTG +TPVAR
Sbjct: 294 DIDGVVIKVDDLALQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVAR 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV + G +++NATLHN D I  L            I++GDRV V+RAG+VIP++V ++
Sbjct: 354 LEPVAVAGVIVSNATLHNADEIDRL-----------GIQIGDRVAVRRAGDVIPQIVSVV 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R  DA+P  FP+ CP+C S V R             RCTGGL C+AQ+ E LKHFVS
Sbjct: 403 LPDRPADARPVVFPTQCPVCGSDVERVDGE------VVTRCTGGLFCAAQRKEALKHFVS 456

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A ++EG+G + +D   + E     ++ PA++F L     T   ++      G  S  N
Sbjct: 457 RRALDVEGMGDKIIDQLVEKE----YVKTPAELFRLDIGILTRLERM------GPKSAQN 506

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L ++++K ++ +  RF+++LGIR VG   A  LA ++ +            A    D  +
Sbjct: 507 LVNALDKAKSTTFARFLYALGIRDVGEATAAGLAAHFGTLD----------ALMTADVDT 556

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKL 652
           L +VP VG ++A  +  F     N   +  L+           +      + +    K +
Sbjct: 557 LQQVPDVGIVVATHVRHFLDEEHNQQIIRELIGPEVGLRWPDPVVVDAGALDNPFAGKTV 616

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L  + R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ LG+ +++E 
Sbjct: 617 VLTGSLSLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQALGIDVIDEV 676

Query: 713 QFLFLLQQ 720
           + + LL Q
Sbjct: 677 EMMRLLGQ 684


>gi|53719773|ref|YP_108759.1| DNA ligase [Burkholderia pseudomallei K96243]
 gi|167816389|ref|ZP_02448069.1| DNA ligase [Burkholderia pseudomallei 91]
 gi|81379503|sp|Q63T07|DNLJ_BURPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52210187|emb|CAH36166.1| DNA ligase [Burkholderia pseudomallei K96243]
          Length = 691

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/726 (36%), Positives = 394/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  + + A+   + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G             +L     LG PVN          G++++++ +   R +LPYD
Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L         +      F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNLGFSTLVGLDR------FAEKSARNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S         + +          
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL---------- 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E L        P      +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 TLLEGH 689


>gi|167570377|ref|ZP_02363251.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis C6786]
          Length = 691

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/726 (36%), Positives = 403/726 (55%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  + + A+   + L  E+   +  YY   +P + D+EYD L      +    PDL  
Sbjct: 5   PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P  P  ++GGE+      V H  P LSL   ++ ED+  F  R+     K  D    
Sbjct: 63  --TPESPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
             + + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + ++P  L    
Sbjct: 121 VTDPVEYACELKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVPLKLKGKH 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G    +        +L     LG PVN          G++ +++ +   R +LPYD
Sbjct: 241 AYGIGVLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTACPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS++K ++ +L RFI++LGIRHVG   A+ LAK++ S                    +L
Sbjct: 514 IDSLDKAKHTTLSRFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIEAL 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E   A  +   P      +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++EE   
Sbjct: 624 GTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEEGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 KLLEGH 689


>gi|325529285|gb|EGD06234.1| NAD-dependent DNA ligase [Burkholderia sp. TJI49]
          Length = 691

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/733 (35%), Positives = 394/733 (53%), Gaps = 56/733 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +    P  +    +A    + L  ++   +  YY   +P + D+EYD L      +  
Sbjct: 1   MARTPAEPPASQPDARA----AWLRDQLQQANYAYYVLDQPDLPDAEYDRLFAELQQLEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+      P+ P  ++GGE+      V H  P LSL   +  +D+  F  R+     K
Sbjct: 57  DHPEFV---TPDSPTQRVGGEVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE+G FV A+ RGDG +GEDV+  +R I +IP
Sbjct: 114 AVDLAGSVTDPVEYACELKFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
             L   ++P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P    
Sbjct: 174 LKLKGADVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233

Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G    +        +L     LG PVN      +   G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSGLLDWYETLGLPVNRERAVVHGADGLLGFFRKVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R  LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RDGLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGAVLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +  RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLLDSLEKAKHTTRARFIYGLGIRHVGESTAKDLAKHFGSLDPIM---------- 556

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648
           N     L+ V  VG I+A++I +F+    N   +E L        P      K     + 
Sbjct: 557 NASIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQQY 721
           ++EE    LL+ +
Sbjct: 677 LDEEGLHQLLEGH 689


>gi|114047080|ref|YP_737630.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
 gi|113888522|gb|ABI42573.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
          Length = 690

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/716 (34%), Positives = 394/716 (55%), Gaps = 51/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++ + A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    + 
Sbjct: 18  QAVTPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA- 76

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 77  --DSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDR-----VGEVSFC 129

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L   N PE++EVR
Sbjct: 130 CEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVR 189

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG   
Sbjct: 190 GEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVE 249

Query: 248 EI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  YE LQ+++  G PV++ ++  +    + +YY ++ + R+ LP++IDG+V 
Sbjct: 250 PTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVM 309

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 310 KVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 369

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  D
Sbjct: 370 GVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPED 418

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+  +FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 419 AKAIAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDID 472

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 473 GMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAQAIEA 522

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S +          A        LI+V  +
Sbjct: 523 AKTTTLPRFLYALGIREVGEATAANLATHFGSLE----------ALRVATIEQLIQVEDI 572

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G+++AQ +  F+  P N+  ++AL+   V+             ++ +  V TGTL ++ R
Sbjct: 573 GEVVAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNR 632

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 633 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 688


>gi|167563194|ref|ZP_02356110.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis EO147]
          Length = 691

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/726 (35%), Positives = 402/726 (55%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  + + A+   + L  E+   +  YY   +P + D+EYD L      +    PDL  
Sbjct: 5   PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P  P  ++GGE+      V H  P LSL   ++ ED+  F  R+     K  D    
Sbjct: 63  --TPESPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
             + + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + ++P  L    
Sbjct: 121 VTDPVEYACELKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVPLKLKGKH 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G    +        +L     LG PVN          G++ +++ +   R +LPYD
Sbjct: 241 AYGIGVLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C S + R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTACPECGSGIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS++K ++ +L RFI++LGIRHVG   A+ LAK++ S                    +L
Sbjct: 514 IDSLDKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIEAL 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E   A  +   P      +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++EE   
Sbjct: 624 GTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEEGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 KLLEGH 689


>gi|53723744|ref|YP_103200.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344]
 gi|67639492|ref|ZP_00438344.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
 gi|121600643|ref|YP_993378.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1]
 gi|124385135|ref|YP_001029185.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10229]
 gi|126450807|ref|YP_001080885.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10247]
 gi|167004074|ref|ZP_02269848.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
 gi|254178005|ref|ZP_04884660.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
 gi|254206491|ref|ZP_04912843.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
 gi|254358100|ref|ZP_04974373.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
 gi|81604820|sp|Q62JB9|DNLJ_BURMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215563|sp|A3MKU9|DNLJ_BURM7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215564|sp|A2SB66|DNLJ_BURM9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215565|sp|A1V575|DNLJ_BURMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52427167|gb|AAU47760.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344]
 gi|121229453|gb|ABM51971.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1]
 gi|124293155|gb|ABN02424.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10229]
 gi|126243677|gb|ABO06770.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10247]
 gi|147753934|gb|EDK60999.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
 gi|148027227|gb|EDK85248.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
 gi|160699044|gb|EDP89014.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
 gi|238520039|gb|EEP83503.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
 gi|243060513|gb|EES42699.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
          Length = 691

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/726 (36%), Positives = 394/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  + + A+   + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G             +L     LG PVN          G++++++ +   R +LPYD
Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L  ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLTAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L      +  +      F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNLGFSTLVALDR------FAEKSARNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S         + +          
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL---------- 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E L        P      +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 TLLEGH 689


>gi|126453906|ref|YP_001066758.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a]
 gi|134277579|ref|ZP_01764294.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
 gi|167739178|ref|ZP_02411952.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 14]
 gi|167824768|ref|ZP_02456239.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 9]
 gi|167846299|ref|ZP_02471807.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei B7210]
 gi|167894881|ref|ZP_02482283.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 7894]
 gi|167903270|ref|ZP_02490475.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei NCTC 13177]
 gi|167919520|ref|ZP_02506611.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei BCC215]
 gi|217421846|ref|ZP_03453350.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
 gi|226198948|ref|ZP_03794511.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
 gi|237812814|ref|YP_002897265.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
 gi|242317106|ref|ZP_04816122.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
 gi|254179316|ref|ZP_04885915.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
 gi|254198094|ref|ZP_04904516.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
 gi|166215566|sp|A3NWN7|DNLJ_BURP0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126227548|gb|ABN91088.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a]
 gi|134251229|gb|EBA51308.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
 gi|169654835|gb|EDS87528.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
 gi|184209856|gb|EDU06899.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
 gi|217395588|gb|EEC35606.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
 gi|225929048|gb|EEH25072.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
 gi|237506455|gb|ACQ98773.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
 gi|242140345|gb|EES26747.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
          Length = 691

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/726 (36%), Positives = 395/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  + + A+   + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G             +L     LG PVN          G++++++ +   R +LPYD
Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L      +  +      F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNLGFSTLVALDR------FAEKSARNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S         + +          
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL---------- 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E L        P      +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 TLLEGH 689


>gi|166216288|sp|Q0HWD2|DNLJ_SHESR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 688

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/716 (34%), Positives = 394/716 (55%), Gaps = 51/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++ + A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    + 
Sbjct: 16  QAVTPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA- 74

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 75  --DSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDR-----VGEVSFC 127

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L   N PE++EVR
Sbjct: 128 CEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG   
Sbjct: 188 GEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVE 247

Query: 248 EI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  YE LQ+++  G PV++ ++  +    + +YY ++ + R+ LP++IDG+V 
Sbjct: 248 PTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVM 307

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 308 KVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 367

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  D
Sbjct: 368 GVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPED 416

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+  +FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 417 AKAIAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDID 470

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 471 GMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAQAIEA 520

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S +          A        LI+V  +
Sbjct: 521 AKTTTLPRFLYALGIREVGEATAANLATHFGSLE----------ALRVATIEQLIQVEDI 570

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G+++AQ +  F+  P N+  ++AL+   V+             ++ +  V TGTL ++ R
Sbjct: 571 GEVVAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNR 630

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 631 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 686


>gi|126441747|ref|YP_001059474.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 668]
 gi|166215567|sp|A3NAV3|DNLJ_BURP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126221240|gb|ABN84746.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 668]
          Length = 691

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/726 (36%), Positives = 395/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  + + A+   + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 LPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G             +L     LG PVN          G++++++ +   R +LPYD
Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L      +  +      F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNLGFSTLVALDR------FAEKSARNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S         + +          
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL---------- 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E L        P      +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 TLLEGH 689


>gi|76810783|ref|YP_333980.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b]
 gi|167720173|ref|ZP_02403409.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei DM98]
 gi|167911510|ref|ZP_02498601.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 112]
 gi|254189298|ref|ZP_04895809.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
 gi|254259109|ref|ZP_04950163.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
 gi|254297202|ref|ZP_04964655.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
 gi|123771899|sp|Q3JR23|DNLJ_BURP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76580236|gb|ABA49711.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b]
 gi|157807762|gb|EDO84932.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
 gi|157936977|gb|EDO92647.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
 gi|254217798|gb|EET07182.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
          Length = 691

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/726 (36%), Positives = 395/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  + + A+   + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G             +L     LG PVN          G++++++ +   R +LPYD
Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L      +  +      F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNLGFSTLVALDR------FAEKSARNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S         + +          
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMHAPIDAL---------- 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E L        P      +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 TLLEGH 689


>gi|161761269|ref|YP_248767.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae 86-028NP]
 gi|166215835|sp|Q4QLJ0|DNLJ_HAEI8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|309973429|gb|ADO96630.1| NAD-dependent DNA ligase [Haemophilus influenzae R2846]
          Length = 670

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 402/709 (56%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    I  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGIDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+++A 
Sbjct: 510 DRFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|148828262|ref|YP_001293015.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
 gi|166215779|sp|A5UIM6|DNLJ_HAEIG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148719504|gb|ABR00632.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
          Length = 670

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/709 (34%), Positives = 400/709 (56%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDTEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGSTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|167837047|ref|ZP_02463930.1| DNA ligase, NAD-dependent [Burkholderia thailandensis MSMB43]
          Length = 691

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/726 (36%), Positives = 400/726 (55%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  + + A+   + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQQIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE+      V H  P LSL   ++ +D+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEVAGGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKATDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + +IP  L   +
Sbjct: 121 VTEPVEYACELKFDGLAISLRYEGGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGRH 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P +++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G    +        +L     LG PVN          G++ +++ +   R +LPYD
Sbjct: 241 AYGIGVLDGVEMPGTHSGLLDWYETLGLPVNRERAVVRGAAGLLGFFHSVGERRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S                     L
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPVMDA----------SIDEL 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E L  +     P      +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 KLLEGH 689


>gi|320540519|ref|ZP_08040169.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
 gi|320029450|gb|EFW11479.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
          Length = 685

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 393/714 (55%), Gaps = 50/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   ++++ L   + +H+  Y+    P + D+EYD L      +  A P+L  +   + 
Sbjct: 1   MKSITEQINQLRASLRHHEYQYHVLDAPEVPDAEYDRLMCELRELESAHPELITA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +  +  +V H +  LSL+ +++ E    F  R+    +  D   + F  E K
Sbjct: 58  PTQRVGAALLAAFDQVRHELLMLSLDNVFDEESFLAFYKRVQERLKISD--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE++++ +R I  IP  L+  NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGANIPRRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + +  F  +N E      K +ANPRNAA+G +R+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQMNTEARRKNGKIFANPRNAAAGSIRQLDPRITANRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  +E L + R  G PVN+G R       ++++Y++++  R+ L +DIDG+V K+D+  
Sbjct: 236 PRSHFERLMQFRAWGLPVNDGARCCTGSDEVLAFYHQVEQDRAQLGFDIDGVVVKIDDID 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW  + KF  ++  T + +I+ Q+GRTG +TPVARLEPV + G  ++N
Sbjct: 296 LQEKLGFVARAPRWATAFKFPAQEQITLVREIEFQVGRTGAITPVARLEPVLVAGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIPKVV ++ + R  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPKVVGVLEDRRPQDTRAVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PQHCPVCGSDVERLEGE------AVARCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + E     ++ PAD+F L     +   ++      G  S  NL +++ K R  + 
Sbjct: 459 IEQLVEKE----YVKNPADLFRLSANMLSGLDRM------GPKSAQNLVNALEKSRQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ S +               D  +L  VP VG+++AQ
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGSLEKLYAA----------DIAALKEVPDVGEVVAQ 558

Query: 611 AIVEFYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
               F     N   +       +       +    + + S    K +V TG+L ++ R  
Sbjct: 559 HTRHFLDEALNQKVIAELVSVEIGINWPVPVVVATEEIDSPFAGKTVVLTGSLSQLSRDD 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A++ +  LGA +S  +S+KTD++I G+  GSKL KAQ+LG+++++E + L L++
Sbjct: 619 AKDRLKVLGAKISGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEAELLRLIE 672


>gi|271501855|ref|YP_003334881.1| DNA ligase [Dickeya dadantii Ech586]
 gi|270345410|gb|ACZ78175.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech586]
          Length = 683

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/726 (35%), Positives = 405/726 (55%), Gaps = 52/726 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +++    +   I     ++ +L  ++ YH+  Y+    P I D+EYD L      +  
Sbjct: 1   MLEKESKTADD--IAAVAAQVEALRAQLRYHEYKYHVEDAPEIPDAEYDTLMNTLKVLEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A P+L     P+ P  ++G     +   V H +P LSL+ +++      F  RI    + 
Sbjct: 59  AHPELV---TPDSPTQRVGAAPLDAFDTVAHDVPMLSLDNVFDEASFLAFCKRINDRLK- 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
            +D  + F  E K+DG  +++ YE+G  V AA RGDG +GE+++A IR I  IP  L   
Sbjct: 115 -NDAELTFCCELKLDGLAVSLLYEQGVLVRAATRGDGTTGENITANIRTIGAIPLRLHGD 173

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           NIP  +EVRGEV++    F ALN+E    G K +ANPRNAA+G LR+L+P    TR L F
Sbjct: 174 NIPTRLEVRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTF 233

Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
             +G+G           ++ L + R  G PV++ +R       ++++Y +++  R TL +
Sbjct: 234 LCYGVGLVEGGTLPDTHWQRLMQFRDWGLPVSDRIRLCTGSEAVLNFYRQVEQERETLGF 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V KV+E +LQ++LG  AR+PRW ++ KF  ++  T L D++ Q+GRTG +TPVAR
Sbjct: 294 DIDGVVIKVNELALQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVAR 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV + G +++NATLHN D I+ L            I++GDRV V+RAG+VIP++V ++
Sbjct: 354 LEPVAVAGVVVSNATLHNADEIERL-----------GIQIGDRVAVRRAGDVIPQIVSVV 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           ++ER  DA+P  FP  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVS
Sbjct: 403 LSERPSDARPIVFPEHCPVCGSELERVEGE------AVTRCTGGLFCAAQRKEALKHFVS 456

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A ++EG+G + +D   + E     ++ PAD+  L     T   ++      G  S  N
Sbjct: 457 RRALDVEGMGDKIIDQLVEKE----YVKTPADLLRLDIGILTRLDRM------GPKSAQN 506

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +++K ++ +  RF+++LGIR VG   A +LA ++ +            A    D  +
Sbjct: 507 LVSALDKAKSTTFARFLYALGIRDVGEATAANLASHFGTLD----------ALQAADLEA 556

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-----KEVSPSIGRHEKNVSSEIENKKL 652
           L +VP VG ++A  +  F     N   ++AL+           +    +  +S    K +
Sbjct: 557 LQQVPDVGIVVATHVRHFLDEAHNQQVIQALISDEVGIHWPDPVRVDVEASTSPFAGKTV 616

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L ++ R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E 
Sbjct: 617 VLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEA 676

Query: 713 QFLFLL 718
           + + LL
Sbjct: 677 EMMRLL 682


>gi|260580185|ref|ZP_05848015.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
 gi|1574651|gb|AAC22753.1| DNA ligase (lig) [Haemophilus influenzae Rd KW20]
 gi|260093469|gb|EEW77402.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
          Length = 679

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/709 (34%), Positives = 400/709 (56%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 10  MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 67  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 126 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 246 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 366 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 415 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 469 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 518

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+++A 
Sbjct: 519 ARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 568

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 569 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 629 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 677


>gi|83858905|ref|ZP_00952427.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633]
 gi|83853728|gb|EAP91580.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633]
          Length = 695

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/716 (41%), Positives = 449/716 (62%), Gaps = 30/716 (4%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L  + AL+ ++A  EL  L +EIS HD  YY+   P I D+ YDAL+ R  AI   FP+L
Sbjct: 5   LKDVNALTSDEAASELERLAREISRHDKAYYEKDAPKISDAAYDALRARNSAIEARFPEL 64

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R    + P +++G + +    +V H++P LSL   +  +D+R F  RI RF   K D  
Sbjct: 65  KRK---DSPSDRVGAKPSEQFGEVVHAVPMLSLGNAFEDQDVRDFADRIRRFLNLK-DEK 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + FT EPKIDG    +RYE+G+ V  A RGDG +GE+V+A ++ I  IP  L  ++P+++
Sbjct: 121 LVFTAEPKIDGLSANLRYEQGELVIGATRGDGRTGENVTANLKTIADIPHRLEGDVPDVL 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY+S  DF  LN      G+  Y NPRNAA+G LR+++P     R L FF +  G
Sbjct: 181 EVRGEVYMSHADFAQLNAMQEERGKPAYKNPRNAAAGSLRQIDPNVTAERPLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + SE  A+ QY+ ++++  LGF +N+ + +  +   ++++Y  +++ R+ L YDIDG+VY
Sbjct: 241 ELSEPLAETQYDAVKRLGQLGFVINDDMVRVESVEDVLAHYRALEAKRADLGYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q++LG  AR+PRW I+HKF+ ++A TRL  I+IQ+GRTG LTPVA+LEPV +G
Sbjct: 301 KVDRLDWQERLGFVARAPRWAIAHKFSPEKAVTRLNAIEIQVGRTGALTPVAKLEPVTVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHN+D I+            +D+RVGD V+++RAG+VIP+VV++++++R   
Sbjct: 361 GVVVSNATLHNQDEIER-----------KDVRVGDTVIIQRAGDVIPQVVEVVLDKRPEA 409

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+PF+FP+ CP+C S  VR+            RCTGGL C AQ +ERLKHFVSR AF+IE
Sbjct: 410 AEPFAFPTLCPVCGSHAVREEGE------VVRRCTGGLICDAQAVERLKHFVSRKAFDIE 463

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI--ENILGFGDVSVTNLYDSI 542
           GLG +Q++ FF        ++ PADIFTL+ R +        +   G+G+ S  NL+ SI
Sbjct: 464 GLGAKQIEAFFHE----GLVKQPADIFTLRARNEAGEINPPIQTREGWGERSAANLFGSI 519

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           ++RRNI L RF+F+LGIRHVG E AR +A+ + S+Q   +E         + + + + + 
Sbjct: 520 DQRRNIGLARFLFALGIRHVGEETARLIARSFTSWQ-VVRETAEAANEPGEAFAAFMDID 578

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G+   +A+ EF+    N  A+ ALL  V+      +    S +  K +VFTG+L++  
Sbjct: 579 GIGETAVKALAEFFAESHNQDALNALLAHVTVE-DAEQVAAESPVAGKTVVFTGSLERFT 637

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+     LGA VS  +S KTDI++ G   GSKL+KAQ+LGV+ M E+++L L+
Sbjct: 638 RDEAKAKAQSLGAKVSGSVSGKTDILVAGPGAGSKLKKAQELGVQTMTEDEWLALI 693


>gi|323499974|ref|ZP_08104932.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
 gi|323314991|gb|EGA68044.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
          Length = 669

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/712 (35%), Positives = 395/712 (55%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +++L+ L + + YH   YY    P I D+EYD L R    +    PDL      
Sbjct: 1   MSKE-IQEKLNQLRETLHYHGVKYYVEDSPEIPDAEYDRLMRELMELESQHPDLM---SL 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG        V H IP LSL+  ++  +L  F  R+         +   F  E
Sbjct: 57  DSPSQRVGGAALDGFGSVNHEIPMLSLDNAFDDAELESFNKRMADRIPSAKFD--VFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L     PE IEVRGE
Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLQGQGWPERIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           V++ K  F  LN++ +  G K + NPRNAA+G LR+L+     TR L+F+ + +G     
Sbjct: 175 VFMPKAGFDKLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVQGA 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +   YE   +++  G P+    ++ +    + +YY ++   R  LPY+IDG+V KVD+
Sbjct: 235 TLSSSHYERFLQLKGWGLPMCPETKRVSGLDEVKAYYQDILQRREALPYEIDGVVIKVDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IALQEQLGFVARAPRWAIAYKFPAQEELTTLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            + +GD V+++RAG+VIP++V ++V+ R   A+  
Sbjct: 355 SNATLHNADEIERLS-----------VMIGDTVVIRRAGDVIPQIVSVVVDRRPDSAREI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+CQS+V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG+
Sbjct: 404 VFPALCPVCQSQVERIEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGE 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L     T   ++      G  S  N+ D++N+ +  
Sbjct: 458 KVIEQLVDREM----VETPADLFKLSAGVITVLDRM------GPKSAQNVVDALNQSKQT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+++ S Q   +  +  +          I V  +G+I+
Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQHFKSLQAVTKATHEEL----------IAVSDIGEIV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  I  F+    N   +  LL++    P I   +++    +  K +V TG+L ++ R  A
Sbjct: 558 ASHITAFFAQESNQQVIGQLLEQGINWPEIEERDESTPQPLAGKTVVLTGSLSQLSRSDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA V+  +S+KTDI+  G+N GSKL KAQ LGV+I  E+  + L+
Sbjct: 618 KAALQDLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGVEIRTEQDLIDLI 669


>gi|296132371|ref|YP_003639618.1| DNA ligase, NAD-dependent [Thermincola sp. JR]
 gi|296030949|gb|ADG81717.1| DNA ligase, NAD-dependent [Thermincola potens JR]
          Length = 665

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/710 (33%), Positives = 377/710 (53%), Gaps = 47/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A K ++ L ++I  H+  YY   +P I D+EYD L R    +   +PDL     P
Sbjct: 1   MDKAAAAKRINELRKQIEEHNYYYYVLDRPRITDAEYDRLMRELTELEQQYPDLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG        V H  P LSL   ++  DL  F  R+           + + +E
Sbjct: 58  DSPTQRVGGAPAQGFQSVRHLAPMLSLSNAFSAADLLDFDKRVRNGL---AGARVEYVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE G+FV  A RGDG  GED++  ++ I +IP  L  ++ E++EVRGE 
Sbjct: 115 LKIDGLAVSLLYENGRFVRGATRGDGEVGEDITQNLKTIKSIPLRLRQDL-ELLEVRGEA 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K +F  +N+     G   +ANPRNAA+G LR+L+P     R L+ F++ LG      
Sbjct: 174 YMPKKEFARVNEAREEAGEPLFANPRNAAAGSLRQLDPAVTAERSLDIFLYALGAVQGQA 233

Query: 251 A-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K   E L  ++ LGF +N  +      + ++ Y       R  LPY+IDG+V KV+  
Sbjct: 234 PVKTHLEGLHLLKDLGFRINPNIVLLPNINEVIDYCQNWTEKRHDLPYEIDGMVIKVNSL 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q  LG  ++SPRW I++KF  +QA T++  I +++GRTG+LTP A LEPV + G+ I+
Sbjct: 294 AQQAALGFTSKSPRWAIAYKFPAEQAVTKVKRIYVRVGRTGVLTPTAELEPVRVAGSTIS 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           +ATLHNED I+            +DIR+GD V++ +AG+VIP++++++  +R    Q F 
Sbjct: 354 SATLHNEDIIR-----------EKDIRIGDTVIIHKAGDVIPEIIEVVKEKRTGQEQEFF 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C   V +           A RC     C  +  E L HFVSRDA +IEGLG  
Sbjct: 403 MPAECPVCHGPVRKPAGE------VAVRCVNK-DCPGRGREGLIHFVSRDAMDIEGLGPA 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D        A  ++  AD++ L         ++      G  SV NL ++I + +   
Sbjct: 456 VIDQLL----TAGLVKDAADLYYLNAEDLIKLERM------GKKSVENLLNAIERSKQKD 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L   IF+LGIRHVGA   + LA ++ S     +     +            +P +G  +A
Sbjct: 506 LASLIFALGIRHVGARAGKILAAHFGSMDRLKEARQEELTA----------IPEIGPKMA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++IV ++++P ++  +E L            +     +E K  V TG L+K  R +AQE 
Sbjct: 556 ESIVAYFRDPAHLRLIERLRGAGVKMTQDIPERGERPLEGKTFVLTGALEKYSRKEAQEL 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +LG  VS+ +S+KTD ++ G +PGSKLEKA+QLG+ +++E+ F  +++
Sbjct: 616 IEKLGGKVSSSVSKKTDYVLAGADPGSKLEKARQLGITVISEDDFERMIK 665


>gi|220935192|ref|YP_002514091.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7]
 gi|254781444|sp|B8GTL0|DNLJ_THISH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219996502|gb|ACL73104.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 675

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 385/713 (53%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E+ RK ++SL  E+ YH+  YY    P I D+ YDAL R    +   +P+L     P+ 
Sbjct: 5   PEKVRKRVASLRDELDYHNHRYYVLDDPEIPDAAYDALMRELQDLEAKYPELV---TPDS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +  +  H +P LSL+  +   D+  F  RI       +++ I F +EPK
Sbjct: 62  PTQRVGGAPLKAFEEARHLLPMLSLDNAFEEADVLAFEKRIRDRLG--EESEIEFAVEPK 119

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  I++ YE G  V  A RGDG +GEDV+A +R I  IP  L     P+++EVRGEVY
Sbjct: 120 LDGLAISLLYEDGHLVRGATRGDGATGEDVTANVRTIRAIPLRLQGRGWPKLLEVRGEVY 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F A N E  + G K + NPRNAA+G LR+L+      R L FF +G G       
Sbjct: 180 MDRAGFEAFNREAASRGEKVFVNPRNAAAGSLRQLDSRITAKRPLTFFAYGAGHVEGGEL 239

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                 +L  +   G  V           G + YY  +   R  LPYDIDG+VYKV+ F 
Sbjct: 240 PDTHAAVLDALAEWGQRVCPERDVVTGAAGCLEYYRRIGERRDGLPYDIDGVVYKVNRFE 299

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  +R+PRW I+HK+  ++  T L D++ Q+GRTG LTPVARLEPV +GG  ++N
Sbjct: 300 LQQRLGFVSRAPRWAIAHKYPAQEQMTLLRDVEFQVGRTGALTPVARLEPVFVGGVTVSN 359

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D ++            +D+R+GD V+V+RAG+VIP+V  ++++ R  +A+    
Sbjct: 360 ATLHNMDEVER-----------KDVRIGDTVIVRRAGDVIPEVAAVVLSRRPHNARHVVM 408

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S +VR          A  RC+GGL C+AQ+ E +KHF SR A +IEGLG + 
Sbjct: 409 PTHCPVCGSEIVRSEGE------AVARCSGGLYCAAQRREAIKHFASRRAMDIEGLGDKL 462

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++        A  +     ++ L   Q     ++      G+ S  NL D++ K ++  L
Sbjct: 463 VEQLVD----AGLVDHVDGLYRLTAEQLAGLERM------GEKSAHNLVDALEKSKHTQL 512

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   AR+LA ++                   D  +L++VP VG ++A 
Sbjct: 513 ARFIFALGIREVGEATARALAIHFGGLDALMAA----------DEEALMQVPDVGPVVAH 562

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQ 667
            +  F+Q P N   ++AL +            + +    +     V TG L+ + R +A 
Sbjct: 563 HVATFFQQPHNREVIDALREAGVHWEESEPAALQAEDLPLSGNTYVLTGALESMTREEAG 622

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +  LGA VS  +S+KT  +I G+  GSKL KA++LGV +++E +FL L+ +
Sbjct: 623 DRLMALGAKVSGSVSKKTTAVIAGEAAGSKLAKAEKLGVPVLSEAEFLELIGE 675


>gi|313201136|ref|YP_004039794.1| DNA ligase, nad-dependent [Methylovorus sp. MP688]
 gi|312440452|gb|ADQ84558.1| DNA ligase, NAD-dependent [Methylovorus sp. MP688]
          Length = 689

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/719 (36%), Positives = 385/719 (53%), Gaps = 54/719 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L ++I+ ++  YY    P + DSEYD L R   A+ HA P+L     P+ P  ++G
Sbjct: 17  QIRQLREQINLYNYQYYVLDDPSVPDSEYDKLFRELQALEHAHPELL---TPDSPTQRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                +   V H    LSL   +   +L  F  RI           + + +EPK DG  I
Sbjct: 74  ASPLKAFASVQHRQAMLSLNNAFEESELTAFDKRIRDALG---IAQVEYAVEPKFDGLAI 130

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDF 198
           T+ YE G FV  A RGDG++GEDVS+ +R I  IP  L   N P +IEVRGEV + K DF
Sbjct: 131 TLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEVRGEVLMLKRDF 190

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQYE 256
             LN +    G K +ANPRNAA+G LR+L+P    TR L FF +GLG    +        
Sbjct: 191 DKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIAEGVPQLSTHAA 250

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +  +  L  PV++         G++ YY  + + R  LP+DIDG+VYKV+  + Q +LG
Sbjct: 251 AMDYLASLRLPVSDQRDTVQGLAGLLDYYARIGAARPNLPFDIDGVVYKVNSIAQQNELG 310

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW ++HKF  ++A T +  ID+Q+GRTG +TPVARL+PV +GG  +TNATLHN+
Sbjct: 311 FVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGGVTVTNATLHNQ 370

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS----FPS 432
           D I             +D+RVGD V V+RAG+VIP+VV +++ +R  D   +        
Sbjct: 371 DEIDR-----------KDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYRLLEAINH 419

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S V+R  +       A  RCTGGL CSAQ+ + + HF SR A +IEGLG++ +D
Sbjct: 420 QCPVCGSHVIRQEDE------AVARCTGGLFCSAQRKQAVLHFASRRAIDIEGLGEKLVD 473

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      I   ADI+ L     +S  ++       + S  N+ D++   +  +L R
Sbjct: 474 QLVD----GAHIHTLADIYRLDLATLSSLDRMA------EKSAQNILDALQASKATTLAR 523

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGIR+VG   A+ LA+Y+ S Q               D   L +VP VG I+A++I
Sbjct: 524 FIYALGIRNVGEATAKDLARYFGSLQALLAA----------DIEQLQQVPDVGPIVAESI 573

Query: 613 VEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F   P N   ++ L    +  +           +  K LV TGTL  + R +A+  + 
Sbjct: 574 RQFLSEPHNQQVIQDLQDVGLHWTESDGAGTQQGVLTGKTLVLTGTLPTMSRDQAKALIE 633

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
             G  V+  +S+KTD ++ G+  GSKL KAQ+LGV +++E   L LL+    +   HDD
Sbjct: 634 AAGGKVAGSVSKKTDFVVAGEEAGSKLTKAQELGVAVIDENGLLALLEDKQAS---HDD 689


>gi|145630192|ref|ZP_01785974.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|144984473|gb|EDJ91896.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
          Length = 670

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/709 (34%), Positives = 400/709 (56%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDTLKDA----------NLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+++ V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIEQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|261496584|ref|ZP_05992964.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307787|gb|EEY09110.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 685

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/707 (37%), Positives = 404/707 (57%), Gaps = 46/707 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +++ ++ Q +  ++  Y+    P + D+EYD L      +    P+L      + P 
Sbjct: 17  ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELI---SADSPT 73

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +      +VTH IP LSL+  ++ EDL  F+ R+  +        + F  EPK+D
Sbjct: 74  QRVGAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQ-LEFCCEPKLD 132

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  ++I YE G    AA RGDG +GE+++A IR I  IP  L + N P  +EVRGEV++ 
Sbjct: 133 GLAVSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMP 192

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFA 251
           ++ F  LN++ +A G K +ANPRNAA+G LR+L+P     R L    +G+G  ++ +   
Sbjct: 193 QSGFNELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELP 252

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +E LQ ++ LG PVNN +R       +++YY E+++ R TL YDIDG V KV++ +L
Sbjct: 253 ATHFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIAL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  +RS RW I++KF  ++  T L ++D Q+GRTG +TPVA+LEPV + G  ++NA
Sbjct: 313 QEQLGFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNA 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            I +GD V+++RAG+VIP++  +++  R  +A+   FP
Sbjct: 373 TLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CPIC S V R          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ +
Sbjct: 422 TACPICHSAVTRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLI 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     I  PAD+F L         ++      G+ S  N  +SI K +N +L 
Sbjct: 476 EQLMARE----LIETPADLFKLDHTTLMRLERM------GEKSAQNALNSIEKAKNTTLP 525

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+FSLGIR VG   A +LA ++ S +   Q            +  L  V  VG+++A  
Sbjct: 526 RFLFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANR 575

Query: 612 IVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           IV F+Q P N+  VE L+ + V        + V + +++K +V TGTL ++ R +A+  +
Sbjct: 576 IVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKALL 635

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             LG  VS  +S KTD +I G+  GSKL KAQ+LG++I++E+QF+ L
Sbjct: 636 QSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL 682


>gi|319776649|ref|YP_004139137.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
 gi|329124164|ref|ZP_08252711.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
 gi|317451240|emb|CBY87473.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
 gi|327467589|gb|EGF13087.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
          Length = 670

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/709 (34%), Positives = 401/709 (56%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MKNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGTITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|261868202|ref|YP_003256124.1| NAD-dependent DNA ligase LigA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413534|gb|ACX82905.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 670

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/707 (36%), Positives = 403/707 (57%), Gaps = 46/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L + + +H+  Y+    P I DSEYD L  +  A+    P+L  +   + P  
Sbjct: 5   IQQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTA---DSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G        ++ H IP LSL+  ++ E+   F+ RI           + F  EPK+DG
Sbjct: 62  RVGARPLSEFAQIRHEIPMLSLDNAFSNEEFFSFVKRIQDRLALVP-EPLTFCCEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             ++I Y  G    AA RGDG +GED++  IR I  IP ++L+ N P  +EVRGEV++  
Sbjct: 121 LAVSILYVNGVLSQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPH 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKG 253
             F  LN+  +  G K +ANPRNAA+G LR+L+P   + R L    + +G    +     
Sbjct: 181 AGFERLNERALEHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPPT 240

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E LQ ++ +G PVNN ++  +    ++++Y  + + RS+L YDIDG V K+++ +LQ+
Sbjct: 241 HFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQ 300

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +++PRW I++KF  ++  TRLLD++ QIGRTG +TPVA+LEPV++GG  ++NATL
Sbjct: 301 RLGFISKAPRWAIAYKFPAEEVRTRLLDVEFQIGRTGAVTPVAKLEPVSVGGVTVSNATL 360

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D IK L            I +GD VL++RAG+VIP+V+ ++   +  + +P  FP+ 
Sbjct: 361 HNNDEIKRL-----------GISIGDIVLIRRAGDVIPQVIKLVHKAKKGN-KPIVFPTH 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S ++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+ +G + ++ 
Sbjct: 409 CPVCDSLIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDSVGGKLIEQ 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     I  PAD+F L     T+ T+   +   G  S  N   S+ K +N +L RF
Sbjct: 463 LVDRE----LIHTPADLFKLD---LTTLTR---LERMGPKSAENALASLEKAKNTTLARF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG   A +LA ++ + +          A  N D   L +VP VG+++A  I 
Sbjct: 513 IFALGIRDVGEATALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 562

Query: 614 EFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F++   N+  VE L+ + V       ++   +  + K +V TGTL ++ R+ A+  + Q
Sbjct: 563 VFWREAHNVAVVEDLIAQGVHWETVDVQEVKENPFKGKTVVLTGTLSQMGRNDAKALLQQ 622

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LGA VS  +S KTD +I G+  GSKL KA +LGV++++EE+FL  + 
Sbjct: 623 LGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFLGWIN 669


>gi|330817444|ref|YP_004361149.1| DNA ligase [Burkholderia gladioli BSR3]
 gi|327369837|gb|AEA61193.1| DNA ligase [Burkholderia gladioli BSR3]
          Length = 691

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/723 (36%), Positives = 392/723 (54%), Gaps = 52/723 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E     Q  +  + L  E+   +  YY   +P + D+EYD L R    I    PDL  
Sbjct: 5   PVEP-PASQPSERAAWLRNELERANHAYYVLDQPDLPDAEYDRLFRELQQIEAEHPDLI- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--- 124
              P+ P  ++GGE       V H  P LSL   ++ ED+  F  R+     K   +   
Sbjct: 63  --TPDSPTQRVGGEAATGFTPVVHDAPMLSLNNGFSDEDIAAFDKRVADALDKAPADLAG 120

Query: 125 ----SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL- 179
                + +  E K DG  I++RYE G+FV AA RGDG +GEDV+  +R I +IP  L   
Sbjct: 121 TAIDPVEYACELKFDGLAISLRYEHGRFVQAATRGDGTTGEDVTENVRTIRSIPLTLKGK 180

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNF 238
           N P +++VRGEV + K DF  LN       ++ +ANPRNAA+G LR+L+      R L+F
Sbjct: 181 NPPALLDVRGEVLMYKRDFARLNQRQREAEQREFANPRNAAAGSLRQLDSKITAQRPLSF 240

Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           F +G+G             +L      G PVN          G++++++++   R  LPY
Sbjct: 241 FAYGIGVLEGATMPDTHSGLLDWYAGFGLPVNRERAVVKGAEGLLAFFHKVGEQREALPY 300

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A TRLL I++Q+GRTG +TPVAR
Sbjct: 301 DIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTRLLAIEVQVGRTGAITPVAR 360

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +
Sbjct: 361 LEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAL 409

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           ++ R  DA  F  P+ CP+C SR+ R          A  RCTGGL C AQ+ + L HF  
Sbjct: 410 LDRRPADAAEFVMPTECPVCGSRIERLPEE------AIARCTGGLFCPAQRKQALWHFAQ 463

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A +I+GLG++ +D   +       +R PAD+F L      +  +      F D S  N
Sbjct: 464 RRALDIDGLGEKIIDQLVEQN----LVRTPADLFHLGFATLAALDR------FADKSAQN 513

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L DS+ K R+ +L RFI++LGIRHVG   A+ LAK++ S Q                   
Sbjct: 514 LLDSLEKARHTTLGRFIYALGIRHVGESTAKDLAKHFGSLQPIMDATTE----------Q 563

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTG 656
           L+ V  VG ++A+++ +F+    N   +  L ++V  P      +     +  K +V TG
Sbjct: 564 LLEVNDVGPVVAESLHQFFAEEHNRTVIAQLREKVDWPEGPPAPREPQGVLAGKTVVLTG 623

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R +A+  +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    
Sbjct: 624 TLPTLGRDEAKALLEAAGAKVTGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMHL 683

Query: 717 LLQ 719
           LL+
Sbjct: 684 LLK 686


>gi|227114832|ref|ZP_03828488.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 684

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/727 (35%), Positives = 404/727 (55%), Gaps = 54/727 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK  +  P E   +  A   ++ L + + +H+  Y+    P I D EYD L +   A+  
Sbjct: 1   MKPVKKEPAE---VNAAALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEA 57

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L  S   + P  ++G     +  +V H +P LSL+ +++ E    F  RI    + 
Sbjct: 58  DHPELVTS---DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKN 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
            DD  + F  E K+DG  +++ YE G  V AA RGDG +GE++++ IR +  IP  L   
Sbjct: 115 GDD--LTFCCELKLDGLAVSLLYENGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGD 172

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           NIP  +EVRGEV++  + F  LN+E    G K +ANPRNAA+G LR+L+P     R L F
Sbjct: 173 NIPRRVEVRGEVFMKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTF 232

Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           F +G+G           +E L + +  G PV++ ++       ++ +Y +++  RS+L +
Sbjct: 233 FCYGVGLLEGGELPASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGF 292

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V KVD   LQ++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVAR
Sbjct: 293 DIDGVVVKVDSLELQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVAR 352

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV + G +++NATLHN D I+ L            +++GDRV+V+RAG+VIP++V I+
Sbjct: 353 LEPVAVAGVIVSNATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIV 401

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            +ER    +P  FP+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVS
Sbjct: 402 ESERPETVRPIVFPAACPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVS 455

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A ++EG+G + +D   + E     ++ PAD+F L     T   ++      G  S TN
Sbjct: 456 RRALDVEGMGDKIIDQLVEKE----YVKTPADLFRLSAGIMTGLDRM------GPKSATN 505

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L +++ K ++ +L RF+++LGIR VG   A +LA ++ S +               D  +
Sbjct: 506 LVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGSLEALFAA----------DEDA 555

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKK 651
           L+ VP VG ++A  +  F +   N   +  L      +I   E      + + S    K 
Sbjct: 556 LLEVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNAEEIDSPFAGKT 615

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +V TG+L  + R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E
Sbjct: 616 VVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDE 675

Query: 712 EQFLFLL 718
            + + LL
Sbjct: 676 AEMIRLL 682


>gi|91784125|ref|YP_559331.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
 gi|123358676|sp|Q13XB0|DNLJ_BURXL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91688079|gb|ABE31279.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
          Length = 688

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/722 (35%), Positives = 394/722 (54%), Gaps = 49/722 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P+   +     +  + L  E+   +  YY   +P + D+EYD L +  ++I    PDL 
Sbjct: 4   TPVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLI 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125
               P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K      
Sbjct: 64  V---PDSPTQRVGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPP 120

Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IP 182
             + +  E K DG  I++RY  G FV A+ RGDG +GE+V+  +R I +IP  L    +P
Sbjct: 121 VPVEYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVP 180

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
            +++VRGEV + K DF  LN+   A  +K +ANPRNAA+G LR+L+      R L+FF +
Sbjct: 181 HVLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFSY 240

Query: 242 GLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G+G    +       E+L   + LG PVN      +   G++ +++ +   R  LPYDID
Sbjct: 241 GIGVLEGMDMPATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDID 300

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKV+    Q+ LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG +TPVARLEP
Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAVTPVARLEP 360

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ 
Sbjct: 361 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDR 409

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+ F  P+ CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A
Sbjct: 410 RPDDAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRA 463

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GLG++ +D   +       +R PAD+F L          +  +  F + S  NL D
Sbjct: 464 LDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLD 513

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ K ++ +L RFI++LGIRHVG   A+ LAK++ S                    +L+ 
Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SVEALLE 563

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           V  VG ++A++I +F+    N   +E   A  +   P      K     +  K +V TGT
Sbjct: 564 VNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPKAPQGVLAGKTVVLTGT 623

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R +A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    L
Sbjct: 624 LPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 683

Query: 718 LQ 719
           L+
Sbjct: 684 LE 685


>gi|114319842|ref|YP_741525.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312282|sp|Q0AAV2|DNLJ_ALHEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114226236|gb|ABI56035.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
          Length = 673

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/708 (36%), Positives = 392/708 (55%), Gaps = 47/708 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  + +L +EI  HD  YY    P+I D+EYDAL     A+    P+L     P+ P  +
Sbjct: 9   QARIEALRREIREHDHRYYVLDAPVIADAEYDALMAELQALEAEHPELI---TPDSPSQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           + G       +VTH+ P LSL+  +   DL +F  R+ +       + + +  EPK+DG 
Sbjct: 66  VAGRPAEGFGEVTHAEPMLSLDNAFEEADLAEFDRRVRQALGL---DPVVYVAEPKLDGL 122

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            ++IRYE G+ V A  RGDG  GE ++  +R I ++P  L     P ++EVRGEV I + 
Sbjct: 123 SVSIRYEDGRLVRAGTRGDGRVGEAITENVRTIRSVPLRLRGEGWPPVMEVRGEVVIRRA 182

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQY 255
           DF  LN++ +A G +P+ANPRNAA+G LR+L+P    R  L FF  G+       A   +
Sbjct: 183 DFERLNEQRLADGERPFANPRNAAAGSLRQLDPRITARRRLTFFTFGVAAA-GRLAASHH 241

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L K+   GF VN  V +     G   YY  + + R  L ++IDG+VYKVD+   +++L
Sbjct: 242 EVLDKLAGWGFRVNERVERVRGLDGCREYYQRLLADRDELSFEIDGVVYKVDDLDAREEL 301

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW I+ K   ++A+T +  I   +GRTG +TPVA LEPV +GG  ++ ATLHN
Sbjct: 302 GFTARAPRWAIAWKLPAQEATTVVRRILPSVGRTGAITPVAELEPVGVGGVTVSRATLHN 361

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D ++            +D+R GD V+V+RAG+VIP++  ++  +R   A+P++ P+ CP
Sbjct: 362 LDEVRR-----------KDVRKGDTVMVRRAGDVIPEITAVVTEKRPEGAEPWAMPAECP 410

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S V+R  +       A HRC GGL C AQ+   L HF SR A +I+GLG++ +    
Sbjct: 411 VCGSEVLRLDDE------AVHRCMGGLYCPAQREGALLHFASRKALDIDGLGEKVVSQLV 464

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       +R PAD+FTL+  Q     ++      GD S  NL  +++K R  +L RF++
Sbjct: 465 ERGM----VRSPADLFTLEHCQLAGLERM------GDKSADNLVAALDKARRTTLPRFLY 514

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGI+HVG   AR LA+++ S +       + +A            P VG ++AQAI  F
Sbjct: 515 ALGIQHVGEVTARRLAEHFGSLEAIMNADESALAET----------PDVGPVVAQAIAHF 564

Query: 616 YQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +  P N   V+AL    V+       +     +  +  V TGTL  + R +A+  +  LG
Sbjct: 565 FAEPHNREVVQALRAAGVTWEEVDPAERGEQPLAGRTFVLTGTLSGMTRDEAKAALEALG 624

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A VS  +S+KTD ++ G+  GSKL KA+ LGV++++E+    LLQ++ 
Sbjct: 625 ARVSGSVSKKTDYLVAGEKAGSKLAKAESLGVEVLDEQALQALLQEHG 672


>gi|254440003|ref|ZP_05053497.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307]
 gi|198255449|gb|EDY79763.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307]
          Length = 706

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/715 (41%), Positives = 434/715 (60%), Gaps = 15/715 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
             IE L+ ++A +EL+ L   ++  +  Y+Q   P I D++YDALK R   I   F DL 
Sbjct: 5   TSIENLTKDEAAQELARLSALLAQANAEYHQADAPRIPDADYDALKLRNAMIEARFSDLK 64

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    + P   +G        KV H++  LSL   +  +D+ +F   + +F    +   +
Sbjct: 65  RR---DSPSETVGATPADGFGKVPHALRMLSLGNAFTDDDVTEFDKSVRKFLGL-ETGDL 120

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE GK V AA RGDG  GE+V+A  R I  +P+VL L+ P+I+E
Sbjct: 121 AFTAEPKIDGLSLSLRYENGKLVQAATRGDGAVGENVTANARTIKDVPQVL-LDAPKILE 179

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           VRGEVY+S +DF ALN     VG K +ANPRNAA+G LR+L+ +   +R L FF +  G+
Sbjct: 180 VRGEVYMSHSDFAALNTRQSNVGSKTFANPRNAAAGSLRQLDASITKSRPLKFFAYAWGE 239

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A  Q   + +++ LGF  N   +   +   ++++Y +++  R+TL YDIDG+VYK
Sbjct: 240 VSAPLADTQSGAIARLKTLGFQTNPLTKICASPSEMIAHYRDIEMQRATLGYDIDGVVYK 299

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ SLQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 300 VDDLSLQRRLGFRSTTPRWAIAHKFPAELAWTTLDAIDIQVGRTGALSPVARLSPVTVGG 359

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHNEDYI G    G  +RGG+DIRVGD V + RAG+VIPKV D+ +++R  + 
Sbjct: 360 VVVANATLHNEDYIAGRGNKGDDIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSKRLGET 419

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF FP+ CP C S  VR+      +     RCTGGL C AQ +E+LKHFVSR AF+I+G
Sbjct: 420 APFDFPTTCPKCGSDAVRE------EGDVVRRCTGGLICPAQAVEKLKHFVSRAAFDIDG 473

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F+  +    +++ PADIFTL  R   S TK+ N  G+GD SV  L+ +++++
Sbjct: 474 LGAKQIEAFYNDDQ--LAVKEPADIFTLGARDMGSLTKLANRDGWGDTSVKKLWQAVDEK 531

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I + R IF+LGIRHVG   +  LA +Y ++  F   +          W  L+ +  VG
Sbjct: 532 REIPVARLIFALGIRHVGENASNLLAIHYGTWSTFEDAMTQASVGEGAGWDDLLGIDGVG 591

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++A ++V  +       +++ L+ ++ P         +S +  K +VFTG+L+K+ R +
Sbjct: 592 AVMAASVVTTFHQSAERASIDRLVAQLRPQDSARP-RSNSPVAGKTVVFTGSLEKMTRAE 650

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+     LGA VS  +S KTD++I G   GSK +KA  LG++ M+E+ +L L + 
Sbjct: 651 AKARAESLGAKVSGSVSAKTDLLIAGPGAGSKAKKATDLGIETMDEDGWLALTKD 705


>gi|30995424|ref|NP_439257.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae Rd KW20]
 gi|145638086|ref|ZP_01793696.1| DNA ligase [Haemophilus influenzae PittII]
 gi|166214918|sp|P43813|DNLJ_HAEIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145272415|gb|EDK12322.1| DNA ligase [Haemophilus influenzae PittII]
 gi|309751252|gb|ADO81236.1| NAD-dependent DNA ligase [Haemophilus influenzae R2866]
          Length = 670

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/709 (34%), Positives = 400/709 (56%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|296158912|ref|ZP_06841740.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
 gi|295890787|gb|EFG70577.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
          Length = 688

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/722 (35%), Positives = 396/722 (54%), Gaps = 49/722 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P+   +     +  + L  E+   +  YY   +P + D+EYD L +  ++I    PDL 
Sbjct: 4   TPVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLI 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125
               P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K      
Sbjct: 64  V---PDSPTQRVGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPP 120

Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IP 182
             + +  E K DG  I++RY  G FV A+ RGDG +GE+V+  +R I +IP  L    +P
Sbjct: 121 VPVEYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVP 180

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
           ++++VRGEV + K DF  LN+   A  +K +ANPRNAA+G LR+L+      R L+FF +
Sbjct: 181 QVLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFSY 240

Query: 242 GLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G+G    +       E+L   + LG PVN      +   G++ +++ +   R  LPYDID
Sbjct: 241 GIGVLEGMDMPATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDID 300

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKV+    Q+ LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG +TPVARLEP
Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEP 360

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ 
Sbjct: 361 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDR 409

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+ F  P+ CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A
Sbjct: 410 RPDDAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRA 463

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GLG++ +D   +       +R PAD+F L          +  +  F + S  NL D
Sbjct: 464 LDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLD 513

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ K ++ +L RFI++LGIRHVG   A+ LAK++ S     +              +L+ 
Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMEA----------SVEALLE 563

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           V  VG ++A++I +F+    N   +E   A  +   P      +     +  K +V TGT
Sbjct: 564 VNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLAGKTVVLTGT 623

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R +A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    L
Sbjct: 624 LPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 683

Query: 718 LQ 719
           L+
Sbjct: 684 LE 685


>gi|261493319|ref|ZP_05989845.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261310963|gb|EEY12140.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 685

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/707 (37%), Positives = 404/707 (57%), Gaps = 46/707 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +++ ++ Q +  ++  Y+    P + D+EYD L      +    P+L      + P 
Sbjct: 17  ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELI---SADSPT 73

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +      +VTH IP LSL+  ++ EDL  F+ R+  +        + F  EPK+D
Sbjct: 74  QRVGAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQ-LEFCCEPKLD 132

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  ++I YE G    AA RGDG +GE+++A IR I  IP  L + N P  +EVRGEV++ 
Sbjct: 133 GLAVSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMP 192

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFA 251
           ++ F  LN++ +A G K ++NPRNAA+G LR+L+P     R L    +G+G  ++ +   
Sbjct: 193 QSGFNELNEKALAKGEKTFSNPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELP 252

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +E LQ ++ LG PVNN +R       +++YY E+++ R TL YDIDG V KV++ +L
Sbjct: 253 ATHFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIAL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  +RS RW I++KF  ++  T L ++D Q+GRTG +TPVA+LEPV + G  ++NA
Sbjct: 313 QEQLGFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNA 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            I +GD V+++RAG+VIP++  +++  R  +A+   FP
Sbjct: 373 TLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CPIC S V R          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ +
Sbjct: 422 TACPICHSAVTRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLI 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     I  PAD+F L         ++      G+ S  N  +SI K +N +L 
Sbjct: 476 EQLMARE----LIETPADLFKLDHTTLMRLERM------GEKSAQNALNSIEKAKNTTLP 525

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+FSLGIR VG   A +LA ++ S +   Q            +  L  V  VG+++A  
Sbjct: 526 RFLFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANR 575

Query: 612 IVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           IV F+Q P N+  VE L+ + V        + V + +++K +V TGTL ++ R +A+  +
Sbjct: 576 IVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKALL 635

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             LG  VS  +S KTD +I G+  GSKL KAQ+LG++I++E+QF+ L
Sbjct: 636 QSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL 682


>gi|134300185|ref|YP_001113681.1| NAD-dependent DNA ligase [Desulfotomaculum reducens MI-1]
 gi|190359251|sp|A4J703|DNLJ_DESRM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|134052885|gb|ABO50856.1| DNA ligase, NAD-dependent [Desulfotomaculum reducens MI-1]
          Length = 670

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 49/715 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS +Q++  + +L +EI++H+  YY   +P I D++YD L +    +    P+L   
Sbjct: 1   MADLS-QQSKARVEALRREINHHNYQYYVLDQPTITDAQYDQLMQELLRLEERHPELV-- 57

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  ++GG++      V H IP LSL   +   DLR+F  R+  +        + +
Sbjct: 58  -TPDSPTQRVGGQVQRGFSSVPHKIPMLSLGNAFGEGDLREFDRRVRSYLP---GEEVKY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  I++ YEKG  V  A RGDG  GED++  ++ I  IP  L+  +P  +EVR
Sbjct: 114 VVELKIDGLAISLWYEKGLLVRGATRGDGELGEDITINLKTIRAIPLRLTQEVP-FLEVR 172

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE Y+ K+ F+ LN+     G   +ANPRNAA+G LR+L+P     R L+ F++ +G   
Sbjct: 173 GEAYMPKDSFVRLNEAREEAGEPLFANPRNAAAGSLRQLDPKITAARNLSVFMYAIGYIE 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E L  ++ LG  +N   +   +   ++ + ++ ++ R  LPY IDG+V KV+
Sbjct: 233 GAKPPSHAESLAWLKELGIRINPDHQVCGSIDEVIDFISQWQAKRYQLPYAIDGMVIKVN 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q++LG   +SPRW I++KF  +QA + + DI I++GRTG+LTP A LEPV + G  
Sbjct: 293 SLEQQQRLGTTMKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTT 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED I+            +DIR+GD+ LV++AG++IP++V +   +R  +  P
Sbjct: 353 VSKATLHNEDIIR-----------QKDIRIGDKALVQKAGDIIPEIVQVYPEKRTGNEVP 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C + VVR          AAHRCT    CSA+  E + HFVSR A +I GLG
Sbjct: 402 FILPVTCPECGAEVVRVAGE------AAHRCTNE-NCSAKSREGIIHFVSRSAMDIMGLG 454

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +  ++   K       ++ PAD++ L+        ++         S   L  +I   +N
Sbjct: 455 EGIVNQLIK----GGLVKDPADLYDLKYEDLIRQERMGA------RSSQKLLAAIEASKN 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL + +F LGIRHVG   A+ LA+ + S Q   Q     +            +  +G  
Sbjct: 505 NSLGQLLFGLGIRHVGERAAKILARQFGSMQALMQATAEDLTG----------ISEIGPR 554

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHK 665
           IA++I+E++    N   +E L K     +   E  ++    +  K  V TGTL+   R +
Sbjct: 555 IAESIMEYFSRQENQGLIERLSKAGVNMLEEVEQTESTDQTLSGKTFVVTGTLEGFSRQE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           AQ  + + G  VS  +S+KT+ ++VG+NPGSK +KA+QLG+ I+ E+ F+ LLQQ
Sbjct: 615 AQRAIEERGGKVSGSVSKKTNYVVVGENPGSKHDKARQLGITILTEQDFVKLLQQ 669


>gi|126726435|ref|ZP_01742276.1| DNA ligase [Rhodobacterales bacterium HTCC2150]
 gi|126704298|gb|EBA03390.1| DNA ligase [Rhodobacterales bacterium HTCC2150]
          Length = 705

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/713 (41%), Positives = 435/713 (61%), Gaps = 16/713 (2%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            +++ +AR EL  L + I+  +  Y+    P I D+EYD L+R    I  AFPDL R+  
Sbjct: 7   DMTMAEARSELKRLAKVIAAANSSYHTADAPEISDAEYDRLRRLNSEIEAAFPDLKRA-- 64

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P + +G E+  +  KV H +  LSL   +   ++  F+ R+  +        + FT 
Sbjct: 65  -DSPSDNVGAEVAEAFSKVKHDVRMLSLGNAFEDTEVDDFVGRVRSYLGH--VGPLAFTA 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPKIDG  +++RYE G+ V AA RGDG +GE+V+   R I  IP  L  N P+++EVRGE
Sbjct: 122 EPKIDGLSLSLRYENGELVQAATRGDGETGENVTHSARTISNIPHHL-DNAPDLLEVRGE 180

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI 249
           VY+  +DF ALN+  I  G K +ANPRNAA+G LR+L+     +R L FF +  G  SE 
Sbjct: 181 VYMRHDDFAALNERQIEKGEKTFANPRNAAAGSLRQLDANITRSRPLAFFAYAWGALSEP 240

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A  Q   + ++R LGF  N+  +   +   ++++Y  ++  RSTL YDIDG+VYKVD+ 
Sbjct: 241 LATTQLAAVNRLRSLGFQTNDLTKLCASAQELITHYKSIEEQRSTLGYDIDGVVYKVDDL 300

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+PV +GG +++
Sbjct: 301 ELQRRLGFRSTTPRWAIAHKFPAELAWTRLRGIDIQVGRTGALSPVARLDPVTVGGVVVS 360

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNEDYI+G    G+ +R G+D RVGD V V RAG+VIPK+ D+ + ER  DA P+ 
Sbjct: 361 NATLHNEDYIQGRGNKGEEIRDGKDFRVGDWVQVYRAGDVIPKLADVNLAERPDDAAPYE 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP CQS  +RD         A  RC+GGL C AQ +E+LKHFVSR  F+I+GLG +
Sbjct: 421 FPTICPECQSPAIRD------DGDAVRRCSGGLICPAQAIEKLKHFVSRGCFDIDGLGNK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQ-RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           Q++ FF   DP   ++ PADIFTLQ R       +++N  G+GD S   L+ +I+++RNI
Sbjct: 475 QVEAFF--GDPELPVKEPADIFTLQVRDADNGLKRLKNRDGWGDKSTQKLFAAIDEKRNI 532

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R IFSLGIRHVG   A  LA+++ SY  F   ++     +++ +  LI +  VG++ 
Sbjct: 533 PLNRLIFSLGIRHVGEAAANLLARHFSSYDKFIIAMDEATDRDSNAYQDLIAIDGVGEVF 592

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A ++V  +       +++ L + ++          +S +  K +VFTGTL+++ R +A+ 
Sbjct: 593 ANSLVTAFSATSERASIDRLTQHLNIQDVVQADTGNSAVAGKIVVFTGTLEQMSRAEAKA 652

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
                GA VS  +S+KTDI++ G   GSK  KA  LG+ +++E  +L L+ + 
Sbjct: 653 QAEAAGAKVSGSVSKKTDILVAGPGAGSKATKAAALGITVIDEAAWLALIAEE 705


>gi|50122504|ref|YP_051671.1| NAD-dependent DNA ligase LigA [Pectobacterium atrosepticum
           SCRI1043]
 gi|81644069|sp|Q6D165|DNLJ_ERWCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49613030|emb|CAG76481.1| DNA ligase [Pectobacterium atrosepticum SCRI1043]
          Length = 681

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/713 (35%), Positives = 398/713 (55%), Gaps = 51/713 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L + + +H+  Y+    P I D EYD L +   A+    P+L  S   + P  ++G
Sbjct: 7   RVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTS---DSPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                +  +V H +P LSL+ +++ E    F  RI    +  DD  + F  E K+DG  +
Sbjct: 64  AAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFCCELKLDGLAV 121

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE+G  V AA RGDG +GE++++ IR +  IP  L   NIP  +EVRGEV++    F
Sbjct: 122 SLLYEEGILVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVFMKHGGF 181

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYE 256
             LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G           +E
Sbjct: 182 EKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPASHWE 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L + +  G PV++ ++       ++ +Y +++  RS+L +DIDG+V KVD  +LQ++LG
Sbjct: 242 RLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVKVDSLALQERLG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN 
Sbjct: 302 FVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHNA 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            +++GDRV+V+RAG+VIP++V I+ +ER    QP  FP+ CP+
Sbjct: 362 DEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPAACPV 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R          A  RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D   +
Sbjct: 411 CGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 464

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     ++ PAD+F L     T   ++      G  S  NL +++ K ++ +L RF+++
Sbjct: 465 KE----YVKTPADLFRLSAGIMTGLDRM------GPKSAMNLVNALEKAKSTTLARFLYA 514

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +LA ++ S +               D  +L+ VP VG I+A  +  F 
Sbjct: 515 LGIRDVGESTAANLAAHFGSLETLFAA----------DEDALLEVPDVGKIVAAHVRHFL 564

Query: 617 QNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +   N   +  L      +I   E      + + S    K +V TG+L  + R +A++ +
Sbjct: 565 EEEHNQTVIRELTDPAGINIYWPEVKVVNAEEIDSPFAGKTVVLTGSLSILSRDEAKDRL 624

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL  +  
Sbjct: 625 TALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLLNNHGD 677


>gi|253999028|ref|YP_003051091.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4]
 gi|253985707|gb|ACT50564.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4]
          Length = 699

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/719 (36%), Positives = 386/719 (53%), Gaps = 54/719 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L ++I+ ++  YY    P + DSEYD L R   A+ HA P+L     P+ P  ++G
Sbjct: 27  QIRQLREQINLYNYQYYVLDDPSVPDSEYDRLFRELQALEHAHPELL---TPDSPTQRVG 83

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                +   V H    LSL   +   +L  F  RI           + + +EPK DG  I
Sbjct: 84  ASPLKAFASVQHRQAMLSLNNAFEEGELTAFDKRIRDALG---IAQVEYAVEPKFDGLAI 140

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDF 198
           T+ YE G FV  A RGDG++GEDVS+ +R I  IP  L   N P +IEVRGEV + K DF
Sbjct: 141 TLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEVRGEVLMLKRDF 200

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQYE 256
             LN +    G K +ANPRNAA+G LR+L+P    TR L FF +GLG    +        
Sbjct: 201 DKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIAEGVPQLSTHAA 260

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +  +  L  PV++         G++ YY  + + R  LP+DIDG+VYKV+  + Q +LG
Sbjct: 261 AMDYLASLRLPVSDQRDTVQGLAGLLDYYTRIGAARPNLPFDIDGVVYKVNSIAQQNELG 320

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW ++HKF  ++A T +  ID+Q+GRTG +TPVARL+PV +GG  +TNATLHN+
Sbjct: 321 FVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGGVTVTNATLHNQ 380

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS----FPS 432
           D I             +D+RVGD V V+RAG+VIP+VV +++ +R  D   +        
Sbjct: 381 DEIDR-----------KDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYRLLEAINH 429

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S V+R  +       A  RCTGGL CSAQ+ + + HF SR A +IEGLG++ +D
Sbjct: 430 QCPVCGSHVIRQEDE------AVARCTGGLFCSAQRKQAVLHFASRRAIDIEGLGEKLVD 483

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      I   ADI+ L     +S  ++       + S  N+  +++  +  +L R
Sbjct: 484 QLVD----GAHIHTLADIYRLDLATLSSLDRMA------EKSAKNIIKALDASKATTLAR 533

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGIR+VG   A+ LA+Y+ S Q               D   L +VP VG I+A++I
Sbjct: 534 FIYALGIRNVGEATAKDLARYFGSLQALLAA----------DIEQLQQVPDVGPIVAESI 583

Query: 613 VEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F   P N   ++ L    +  +           +  K LV TGTL  + R +A+  + 
Sbjct: 584 RQFLSEPHNQQVIQDLQDVGLHWTESDGAGTQQGVLTGKTLVLTGTLPTMSRDQAKALIE 643

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
             G  V+  +S+KTD ++ G+  GSKL KAQ+LGV +++E   L LL+   ++   HDD
Sbjct: 644 AAGGKVAGSVSKKTDFVVAGEEAGSKLTKAQELGVAVLDENGLLALLEDKQSS---HDD 699


>gi|254489942|ref|ZP_05103137.1| DNA ligase, NAD-dependent [Methylophaga thiooxidans DMS010]
 gi|224465027|gb|EEF81281.1| DNA ligase, NAD-dependent [Methylophaga thiooxydans DMS010]
          Length = 673

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/710 (34%), Positives = 391/710 (55%), Gaps = 45/710 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++  ++L + I++++  YY    P + D+EYD L      +    P+L  +   + P 
Sbjct: 6   EVQQRAATLRELINHYNYLYYVTDNPEVPDAEYDRLFSELQQLEQTHPELLTA---DSPT 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE+     ++ H++P LSL+ +++ E L  F  R+  +     D    +  EPK+D
Sbjct: 63  QRVGGEVLDKFAEIEHAMPMLSLDNVFDQEALTAFDKRVRDWLNT--DQPQIYAAEPKLD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  I+IRYE+G  V AA RGDG+ GEDV+A +R I ++P  L   NIP I+EVRGE+++ 
Sbjct: 121 GLAISIRYEQGVLVQAATRGDGNYGEDVTANVRTIKSVPLKLSGDNIPAIVEVRGEIFMP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AK 252
           K+ F  LN   +   +K + NPRNAA+G LR+L+     TR L  + +G+G         
Sbjct: 181 KDGFERLNQSQLDNNKKVFVNPRNAAAGSLRQLDSKITATRPLEIYCYGIGYIEGAARPA 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E +  +   G  ++  +++         Y  ++   R +L YDIDG+V KVD  +LQ
Sbjct: 241 SHTEAMSMIANWGCRISPELKKLEGLEACHRYIEQLGERRDSLAYDIDGVVLKVDNTALQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I++KF  ++  T + DI+IQ+GRTG LTPVARL+PV +GG  ++NAT
Sbjct: 301 ERLGFVSRAPRWAIAYKFPAQEEMTTIEDIEIQVGRTGALTPVARLKPVFVGGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I+            +D+R+GD+V+V+RAG+VIP+VV +I+++R    + F  P+
Sbjct: 361 LHNEDEIRR-----------KDVRIGDQVIVRRAGDVIPEVVKVILSKRTDTVREFVMPT 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S V R+         A  RC+GGL C AQ+ E +KHF SR A +++GLG + ++
Sbjct: 410 QCPVCGSDVEREAGE------AVSRCSGGLFCPAQRKEAIKHFASRKALDVDGLGDKLVE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               +E     I+  AD+F L   Q     ++         S  NL  +I   +     R
Sbjct: 464 QMVDAE----LIKDAADLFVLTVEQLAGLERMGQ------KSADNLVRAIKASKQTRFPR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG   ARSLA ++              A    D  +L+ +  VG I+A  I
Sbjct: 514 FLYALGIREVGEATARSLAMHFADLD----------ALKAADSEALVEIEDVGPIVAHHI 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             F+Q P N+  +  L+          + +  S +  K +V TGTL ++ R +A+E +  
Sbjct: 564 ETFFQQPHNLEVINRLIDVGVSWPQEEKSHSDSALSGKTIVLTGTLVQMSRSEAKEKLLA 623

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           LGA V+  +S+KTD ++ G + GSKL KA  L + +++E   L  L+Q  
Sbjct: 624 LGAKVAGSVSKKTDYVVAGADAGSKLTKAASLDISVVDEAMLLEWLKQEK 673


>gi|254508455|ref|ZP_05120575.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16]
 gi|219548665|gb|EED25670.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16]
          Length = 669

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/709 (35%), Positives = 385/709 (54%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q +++L+ L + + YH   YY    P I D+EYD L R    +    P+L      + P
Sbjct: 3   QQIQEKLNQLRESLHYHGIKYYVEDAPEIPDAEYDRLMRELIELEAQNPNLI---SVDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG        V H IP LSL+  ++ ++L  F  R+             F  EPK+
Sbjct: 60  SQRVGGAPLDGFTPVAHEIPMLSLDNAFDDDELNAFHKRMLDRVAGSSVE--AFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L     P  IEVRGEV++
Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLCGEGWPARIEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251
            K  F  LN+  +  G K + NPRNAA+G LR+L+      R L+F+ + +G       +
Sbjct: 178 PKAGFEKLNEHALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLSFYAYSVGVVEGAALS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +  YE   +++  G P+    RQ  +   + +YY ++   R  L Y+IDG+V KVD   L
Sbjct: 238 ESHYERFLQLKSWGLPMCPETRQVESLDDVKAYYKDILQRRDQLAYEIDGVVIKVDSIEL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QERLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L            +++GD V+++RAG+VIP++V ++   R  DA+   FP
Sbjct: 358 TLHNADEIARL-----------GVKIGDSVVIRRAGDVIPQIVSVVAERRPDDAREIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP+C S+V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 SQCPVCNSQVERVEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGVKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S  N+ D++ K +  +L 
Sbjct: 461 EQLVDREM----VETPADLFKLSAGIITVLDRM------GPKSAQNVVDALAKAKQTTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA ++ +            A        LI VP +GDI+A  
Sbjct: 511 RFLYSLGIREVGEATAANLALHFKTLD----------AIKAASHEQLIAVPDIGDIVASH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+    N   ++ L+ +    P I    ++V   +  K +V TG+L ++ R+ A+  
Sbjct: 561 ITAFFAQDNNQSVIDDLIAQGICWPDIEEKGEDVPQPLAGKTVVLTGSLSQLSRNDAKAA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LGV+I  E+  + LL
Sbjct: 621 LQNLGAKVTGSVSKKTDILFAGENAGSKLSKAQELGVEIRTEQDLIDLL 669


>gi|127513305|ref|YP_001094502.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4]
 gi|166216242|sp|A3QFJ5|DNLJ_SHELP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126638600|gb|ABO24243.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4]
          Length = 669

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/711 (35%), Positives = 396/711 (55%), Gaps = 50/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  + E+  L  E++ H+  YY    P I D+EYD L RR   +    P+LA +   + 
Sbjct: 1   MQAIQDEIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE      +VTH  P LSL+ +++ E+   F  R+         ++  F  EPK
Sbjct: 58  PTQRVGGEALSKFNQVTHLKPMLSLDNVFSEEEFNAFYKRVGDKLP----DTPAFCCEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  ++I Y  G F  AA RGDG  GED++  +R I ++P  L     P ++EVRGEV+
Sbjct: 114 LDGLAVSILYRDGVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVRGEVF 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE--- 248
           + K  F A+ND+  A G K + NPRNAA+G LR+L+     +R L F+ + LG       
Sbjct: 174 MPKAAFEAVNDKARAKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPETW 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A   +E L +++  G PV++ V+       +++YY ++ + RS L Y+IDG+V KV++
Sbjct: 234 PLAASHFEQLVQLKEWGCPVSSEVKVCADIPSVLAYYQDILTRRSELAYEIDGVVLKVND 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  A++PRW  ++KF  ++  T+L  +D Q+GRTG +TPVARL+PV +GG  +
Sbjct: 294 IAQQQTLGFVAKAPRWATAYKFPAQEEITQLEGVDFQVGRTGAVTPVARLQPVFVGGVTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            + +GD V+++RAG+VIP+VV ++  +R  DAQ  
Sbjct: 354 SNATLHNADEIARL-----------GVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQAI 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+C S V R          A  RCTGGL C AQ+ E +KHF SR A +I+G+G 
Sbjct: 403 QFPPQCPVCGSDVERVEGE------AVARCTGGLVCEAQRKEAIKHFASRKALDIDGMGD 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L     T   ++      G  S TNL +++   +  
Sbjct: 457 KVVEQLIDKE----LVASPADLFKLTASAITMLDRM------GMKSATNLVNALEAAKQT 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF++SLGIR VG   A +LA Y+ + ++  Q           D  + ++V  VG I+
Sbjct: 507 TFARFLYSLGIREVGEATAANLANYFKTLEHLKQA----------DAETFMKVDDVGVIV 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667
           AQ +V F++ P N+  ++ LL+         E    +  ++ +  V TGTL ++ R+ A+
Sbjct: 557 AQHLVHFFEQPHNLEVIDGLLQAGVHWPDIEEVAEEALSLKGQTWVLTGTLTQLNRNDAK 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++E + L +L
Sbjct: 617 AKLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQELGVKVIDEAELLAIL 667


>gi|53803401|ref|YP_114852.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath]
 gi|81681278|sp|Q604U8|DNLJ_METCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53757162|gb|AAU91453.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath]
          Length = 673

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/711 (35%), Positives = 387/711 (54%), Gaps = 46/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +  ++   L +EI +H+  YY+   P+I D+EYD L     AI   +P+L     P+ 
Sbjct: 4   PAEVVEKARKLREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYPELV---TPDS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSLE  ++ EDL  F  R+ +   +   +++ +  EPK
Sbjct: 61  PTQRVGAPPVEAFTEVRHEVPMLSLENAFSEEDLTAFDRRVRKELSR---DTLEYVAEPK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  + + Y+ G  V AA RGDG  GEDV+  +RA+  IP  L   + P+  E RGEV+
Sbjct: 118 LDGLAVNLLYQDGVLVRAATRGDGEVGEDVTHNVRAVRAIPLRLKGEDFPDRFEARGEVF 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-F 250
           + K  FLALN+     G K + NPRNAA+G LR+L+     +R L+F+ +G+G   +   
Sbjct: 178 MPKRGFLALNERARRSGEKTFVNPRNAAAGSLRQLDARVTASRPLSFYAYGIGAFPDARL 237

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q+E+L+ ++  G PV+   R      G + YY  +   R  LPYDIDG+VYKVD+  
Sbjct: 238 PATQHELLESLQRWGLPVSPEYRVVRGAAGCLEYYRSLGERRHDLPYDIDGVVYKVDDLK 297

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG  +R+PRW I+HKF  ++A TR++ ID+Q+GRTG+LTPVARLEPV +GG  +TN
Sbjct: 298 AQAGLGFVSRAPRWAIAHKFPAEEARTRVVGIDVQVGRTGVLTPVARLEPVFVGGVTVTN 357

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+            +D+R GD V+V+RAG+VIP++V ++   R P A+PF  
Sbjct: 358 ATLHNADEIRR-----------KDVRPGDTVIVRRAGDVIPEIVRVVPELRKPGAEPFRM 406

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S V  +            RC+GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 407 PEVCPECGSAVEAEPGE------VLARCSGGLYCPAQHKESIKHFASRRAMDIEGLGDKL 460

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     +     I   AD++ L         ++  +   G+ S  NL  ++ + +  +L
Sbjct: 461 VDQLVGRK----LIATVADLYRL------DLDRLAGLDRMGEKSAANLLAALERSKRTTL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A+ L++++ S +   +     +          + V  VG ++++
Sbjct: 511 ARFLYALGIRDVGEVTAKVLSEHFGSLEALMEATEEEL----------LAVADVGPVVSR 560

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+  P N   +  LL                 ++    V TGTL  + R +A+  +
Sbjct: 561 HIRLFFAQPHNREVISQLLACGVSWEKPAPAPRKLPLQGLVFVLTGTLASMSRDEARARL 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             LGA  +  +SR T  ++ G  PGSKL+KA +LGV +++E+ FL LL++ 
Sbjct: 621 EALGAKCTGSVSRNTSFVVAGSEPGSKLDKASELGVPVLDEKGFLDLLERG 671


>gi|94310370|ref|YP_583580.1| DNA ligase, NAD-dependent [Cupriavidus metallidurans CH34]
 gi|123383876|sp|Q1LNG5|DNLJ_RALME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|93354222|gb|ABF08311.1| DNA ligase, NAD(+)-dependent [Cupriavidus metallidurans CH34]
          Length = 721

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/748 (35%), Positives = 385/748 (51%), Gaps = 74/748 (9%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S +   +    L +E+  +   YY    P I D++YDAL     A+    P+L     
Sbjct: 14  APSGDSPAERAQWLREELERYSYQYYVLDAPTIPDADYDALFIELQALEAEHPELL---T 70

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS----- 125
           P+ P  ++GG    +   V H +P LSL   +  ED+  F  R  +   +    +     
Sbjct: 71  PDSPTQRVGGAPLSAFDSVRHRVPMLSLNNGFEDEDVINFDRRCAQGLGRATAAAPAAFA 130

Query: 126 --------------------------IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159
                                     + +  E K DG  +++RYE G  V AA RGDG +
Sbjct: 131 TPAAPADDLFSAADAAEAAANTAGNAVEYACELKFDGLAMSLRYENGTLVQAATRGDGET 190

Query: 160 GEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNA 219
           GEDV+A +R I  IP  L    P ++EVRGEV++ + DF  LN      G K + NPRNA
Sbjct: 191 GEDVTANVRTIKAIPLKLRGTAPSVLEVRGEVFMYRADFDKLNARQAESGEKTFVNPRNA 250

Query: 220 ASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANT 277
           A+G LR+L+P     R L+FF +G+G+            ML     LG PV +  R    
Sbjct: 251 AAGSLRQLDPRITAKRPLSFFAYGVGEMEGFDRPGTHSAMLDGFAKLGLPVCDERRVVRG 310

Query: 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337
             G++S++ E+   R  LPYDIDG+VYKV+  + Q+QLG  +R+PR+ ++HKF  ++ +T
Sbjct: 311 AQGLLSFHREVGERRDQLPYDIDGVVYKVNAIAEQEQLGFVSRAPRFALAHKFPAQEMTT 370

Query: 338 RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397
            + DI++Q+GRTG +TPVARL PV +GG  +TNATLHNED I+            +D+ +
Sbjct: 371 TVEDIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRR-----------KDVHI 419

Query: 398 GDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457
           GD V+V+RAG+VIP+VV +++  R  DA+ F  P+ CP+C S V R          A  R
Sbjct: 420 GDTVIVRRAGDVIPEVVAVVLERRPADARAFVMPTECPVCGSHVERLEGE------AIAR 473

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517
           CTGGL C+AQ+ + L HF  R A +IEGLG + ++           +R PAD++ L   +
Sbjct: 474 CTGGLICAAQRKQALLHFAQRRAMDIEGLGDKVVEQLVD----LGIVRTPADLYKLGVAK 529

Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
             +  ++       D S +NL  +I + R  ++ RFIF+LGIRHVG   A+ LAK++   
Sbjct: 530 LAALDRMA------DKSASNLVAAIEQSRETTMNRFIFALGIRHVGEATAKDLAKHFGKL 583

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSI 636
            N                 +L+ V  VG ++AQ+I  F   P N+  +E L    V  + 
Sbjct: 584 DNLLAADE----------AALLEVNDVGPVVAQSIANFIAEPHNVEVIEQLRAAGVHWAE 633

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
                     +  K  V TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GS
Sbjct: 634 TEPTARAPLPLAGKTFVLTGTLPTMSREDAKEKLEAAGAKVAGSVSKKTDYVVAGAEAGS 693

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           KLEKAQ LGV +++EE  L LL +    
Sbjct: 694 KLEKAQTLGVAVLDEEGMLKLLAEVGAA 721


>gi|307729327|ref|YP_003906551.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
 gi|307583862|gb|ADN57260.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
          Length = 688

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/722 (36%), Positives = 389/722 (53%), Gaps = 49/722 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P    +     +  + L  E+   +  YY   +P + D+EYD L +  ++I    PDL 
Sbjct: 4   TPASNPATSAPAERAAWLRTELERANYAYYVLDQPDLPDAEYDRLFKELESIEAEHPDLI 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125
               P+ P  ++GGE       V H  P LSL   +  ED+  F  R+            
Sbjct: 64  V---PDSPTQRVGGEAASGFEPVVHDQPMLSLNNGFADEDIIAFDKRVGDALGNNAKEPP 120

Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IP 182
             + +  E K DG  I++RY  G FV AA RGDG +GE+V+  IR + +IP  L    +P
Sbjct: 121 VPVDYATELKFDGLAISLRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLRLKGKRVP 180

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
            I++VRGEV + K DF  LN+   A G K +ANPRNAA+G LR+L+      R L+FF +
Sbjct: 181 HILDVRGEVLMFKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDSKITAQRPLSFFAY 240

Query: 242 GLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G+G    +       E+L   + LG PVN          G+++++  +   R  LPYDID
Sbjct: 241 GIGVLDGMEMPATHSELLDWYKELGLPVNAERAVVKGAEGLLAFFRAVGEKRDKLPYDID 300

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKV+    Q+ LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEP
Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEP 360

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ 
Sbjct: 361 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDR 409

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+ F  P+ CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A
Sbjct: 410 RPADAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLICPAQRKQALWHFAQRRA 463

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GLG++ +D   +       +R PAD+F L          +  +  F D S  NL D
Sbjct: 464 MDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFADKSAQNLLD 513

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ K ++ +L RFI++LGIRHVG   A+ LAK++ S                    +L+ 
Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SVEALLE 563

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGT 657
           V  VG ++A++I +F+    N   +E L        P      K     +  K +V TGT
Sbjct: 564 VNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGT 623

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R  A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    L
Sbjct: 624 LPTLSREDAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 683

Query: 718 LQ 719
           L+
Sbjct: 684 LE 685


>gi|145636448|ref|ZP_01792116.1| DNA ligase [Haemophilus influenzae PittHH]
 gi|145270273|gb|EDK10208.1| DNA ligase [Haemophilus influenzae PittHH]
          Length = 670

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/709 (35%), Positives = 402/709 (56%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MKNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +S   F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 177 MSHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LDRMGTKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIFSLGIR VG   A +LA ++ +            A  + +   L +VP VG+++A 
Sbjct: 510 ARFIFSLGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|253689765|ref|YP_003018955.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756343|gb|ACT14419.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 681

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/710 (36%), Positives = 397/710 (55%), Gaps = 51/710 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L + + +H+  Y+    P I D EYD L +   A+    P+L  S   + P  ++G
Sbjct: 14  RVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKALEADHPELVTS---DSPTQRVG 70

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                +  +V H +P LSL+ +++ E    F  RI    +  DD  + F  E K+DG  +
Sbjct: 71  AAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFCCELKLDGLAV 128

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE G  V AA RGDG +GE++++ IR +  IP  L   NIP  +EVRGEV++  + F
Sbjct: 129 SLLYEDGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGENIPRRVEVRGEVFMKHSGF 188

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYE 256
             LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G           +E
Sbjct: 189 EKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPASHWE 248

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L + +  G PV++ ++       ++ +Y  ++  RS+L +DIDG+V KVD   LQ++LG
Sbjct: 249 RLMQFKAWGLPVSDKIKLCTGPAEVLDFYRHVEQTRSSLGFDIDGVVVKVDSLELQERLG 308

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN 
Sbjct: 309 FVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHNA 368

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            +++GDRV+V+RAG+VIP++V I+ +ER    QP  FPS CP+
Sbjct: 369 DEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPSACPV 417

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R          A  RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D   +
Sbjct: 418 CGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 471

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     ++ PAD+F L     T   ++      G  S TNL +++ K ++ +L RF+++
Sbjct: 472 KE----YVKTPADLFRLSAGIMTGLDRM------GPKSATNLVNALEKAKSTTLARFLYA 521

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +LA ++ S +               D  +L+ VP VG ++A  +  F 
Sbjct: 522 LGIRDVGESTAANLAAHFGSLEALFAA----------DEETLLAVPDVGKVVAAHVRHFL 571

Query: 617 QNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +   N   +  L      +I   E      + + S    K +V TG+L  + R +A++ +
Sbjct: 572 EEEHNQTVIRELTDPAGINIHWPEVVVVKAEEIDSPFAGKTVVLTGSLTILSRDEAKDRL 631

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 632 TALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLLGE 681


>gi|28897574|ref|NP_797179.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260878266|ref|ZP_05890621.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
 gi|260895418|ref|ZP_05903914.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
 gi|260903353|ref|ZP_05911748.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
 gi|81728289|sp|Q87RJ4|DNLJ_VIBPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28805786|dbj|BAC59063.1| DNA ligase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088617|gb|EFO38312.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
 gi|308090169|gb|EFO39864.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
 gi|308107994|gb|EFO45534.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
          Length = 670

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/710 (35%), Positives = 391/710 (55%), Gaps = 47/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL      + P
Sbjct: 3   ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTV---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+      +VTH +P LSL+  ++  +L  F  R         ++   +  EPK+
Sbjct: 60  SQRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIG--GESIKQYCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L   + P  +EVRGEV++
Sbjct: 118 DGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251
            K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G       A
Sbjct: 178 PKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLA 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE   +++  G P+    ++ ++   + +YY  +   R  LPY+IDG+V K+D+ ++
Sbjct: 238 ASHYERFLQIKSWGLPMCPETKRVDSLADVKTYYQHILQRRDALPYEIDGVVIKIDDIAV 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            +++GD+V+++RAG+VIP+VV +I   R   A+   FP
Sbjct: 358 TLHNADEIERLQ-----------VKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RCTGGL C AQ+ + LKHFVSR A +++GLG + +
Sbjct: 407 TQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S  N+ +++ K +  +L 
Sbjct: 461 EQLVDREM----VETPADLFKLSAGVLTVLERM------GPKSAQNIVNALEKSKLTTLP 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ S +                   LI V  +G ++A+ 
Sbjct: 511 RFLYSLGIREVGEATAANLAQHFKSLEAIQAATEE----------QLIAVQDIGVVVAKH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F++  +N   V+ LL +    P +   E+     +E K +V TGTL ++ R +A+E 
Sbjct: 561 ITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKEA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 621 LQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELIN 670


>gi|148826285|ref|YP_001291038.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittEE]
 gi|166215778|sp|A5UD04|DNLJ_HAEIE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148716445|gb|ABQ98655.1| DNA ligase [Haemophilus influenzae PittEE]
          Length = 670

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/709 (34%), Positives = 397/709 (55%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KQLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG  GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGTIGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYQDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW  ++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWATAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGTKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|262394922|ref|YP_003286776.1| DNA ligase [Vibrio sp. Ex25]
 gi|262338516|gb|ACY52311.1| DNA ligase [Vibrio sp. Ex25]
          Length = 690

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/710 (35%), Positives = 393/710 (55%), Gaps = 47/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL      + P
Sbjct: 23  ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITV---DSP 79

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+   +  +VTH +P LSL+  ++  +L  F  R       +      +  EPK+
Sbjct: 80  SQRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSQSVKE--YCCEPKL 137

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  N  P  +EVRGEV++
Sbjct: 138 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVFM 197

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
            K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G       A
Sbjct: 198 PKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGAELA 257

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE   +++  G P+    ++  +   + +YY ++   R  LPY+IDG+V K+D+ ++
Sbjct: 258 ASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDDIAV 317

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 318 QERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 377

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            +++GD V+++RAG+VIP+VV +I   R   A+   FP
Sbjct: 378 TLHNADEIERLQ-----------VKIGDHVVIRRAGDVIPQVVSVIKERRPETARDIIFP 426

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RCTGGL C AQ+ + LKHFVSR A +++GLG + +
Sbjct: 427 TQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVI 480

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     ++ PAD+F L     T   ++      G  S  N+ +++ K +  +L 
Sbjct: 481 EQLVDREM----VKTPADLFKLSAGILTVLDRM------GPKSAQNIVNALEKSKETTLP 530

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA ++ + +          A  N +   LI V  +G ++AQ 
Sbjct: 531 RFLYSLGIREVGEATAANLAMHFKTLE----------AIQNANEEQLIEVQDIGAVVAQH 580

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   V+ LL++    P I   E+     +E K +V TGTL ++ R +A+E 
Sbjct: 581 ITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTEAKEA 640

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 641 LQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELMN 690


>gi|145634259|ref|ZP_01789970.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
 gi|145268703|gb|EDK08696.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
          Length = 670

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/709 (34%), Positives = 398/709 (56%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEFEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    + +G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYSIGIAEGVNL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVNRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|254360665|ref|ZP_04976814.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
 gi|153091205|gb|EDN73210.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
          Length = 685

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/707 (37%), Positives = 403/707 (57%), Gaps = 46/707 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +++ ++ Q +  ++  Y+    P + D+EYD L      +    P+L      + P 
Sbjct: 17  ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELI---SADSPT 73

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +      +VTH IP LSL+  ++ EDL  F+ R+  +        + F  EPK+D
Sbjct: 74  QRVGAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQ-LEFCCEPKLD 132

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  ++I YE G    AA RGDG +GE+++A IR I  IP  L + N P  +EVRGEV++ 
Sbjct: 133 GLAVSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMP 192

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFA 251
           ++ F  LN++ +A G K +ANPRNAA+G LR+L+P     R L    +G+G  ++ +   
Sbjct: 193 QSGFNELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELP 252

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +E LQ ++ LG PVNN +R       +++YY E+++ R TL YDIDG V KV++ +L
Sbjct: 253 ATHFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIAL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  +RS RW I++KF  ++  T L ++  Q+GRTG +TPVA+LEPV + G  ++NA
Sbjct: 313 QEQLGFISRSSRWAIAYKFPAQEEMTILKEVGFQVGRTGAITPVAKLEPVFVAGVTVSNA 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            I +GD V+++RAG+VIP++  +++  R  +A+   FP
Sbjct: 373 TLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVMLERRPENAKKIEFP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CPIC S V R          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ +
Sbjct: 422 TACPICHSAVTRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLI 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     I  PAD+F L         ++      G+ S  N  +SI K +N +L 
Sbjct: 476 EQLMARE----LIETPADLFKLDHTTLMRLERM------GEKSAQNALNSIEKAKNTTLP 525

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+FSLGIR VG   A +LA ++ S +   Q            +  L  V  VG+++A  
Sbjct: 526 RFLFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANR 575

Query: 612 IVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           IV F+Q P N+  VE L+ + V        + V + +++K +V TGTL ++ R +A+  +
Sbjct: 576 IVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKALL 635

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             LG  VS  +S KTD +I G+  GSKL KAQ+LG++I++E+QF+ L
Sbjct: 636 QSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL 682


>gi|301169841|emb|CBW29445.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae 10810]
          Length = 670

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/707 (34%), Positives = 397/707 (56%), Gaps = 45/707 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDHPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVNRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDTLKDA----------NLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL 
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLA 666


>gi|153838362|ref|ZP_01991029.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
 gi|149748221|gb|EDM59080.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
          Length = 670

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/710 (35%), Positives = 392/710 (55%), Gaps = 47/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL      + P
Sbjct: 3   ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTV---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+      +VTH +P LSL+  ++  +L  F  R         ++   +  EPK+
Sbjct: 60  SQRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIG--GESIKQYCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L   + P  +EVRGEV++
Sbjct: 118 DGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251
            K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G       A
Sbjct: 178 PKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLA 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE   +++  G P+    ++ ++   + +YY ++   R  LPY+IDG+V K+D+ ++
Sbjct: 238 ASHYERFLQIKSWGLPMCPETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDDIAV 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            +++GD+V+++RAG+VIP+VV +I   R   A+   FP
Sbjct: 358 TLHNADEIERLQ-----------VKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RCTGGL C AQ+ + LKHFVSR A +++GLG + +
Sbjct: 407 TQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S  N+ +++ K +  +L 
Sbjct: 461 EQLVDREM----VETPADLFKLSAGVLTVLERM------GPKSAQNIVNALEKSKLTTLP 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ S +                   LI V  +G ++A+ 
Sbjct: 511 RFLYSLGIREVGEATAANLAQHFKSLEAIQAATEE----------QLIAVQDIGVVVAKH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F++  +N   V+ LL +    P +   E+     +E K +V TGTL ++ R +A+E 
Sbjct: 561 ITTFFEEEKNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKEA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 621 LQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELIN 670


>gi|145633173|ref|ZP_01788905.1| DNA ligase [Haemophilus influenzae 3655]
 gi|144986399|gb|EDJ92978.1| DNA ligase [Haemophilus influenzae 3655]
          Length = 670

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/709 (34%), Positives = 397/709 (55%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    + +G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYSIGIAEGVNL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +            A  + +   L +V  VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVSDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|39995996|ref|NP_951947.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA]
 gi|81702997|sp|Q74ER9|DNLJ_GEOSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|39982761|gb|AAR34220.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA]
 gi|298505011|gb|ADI83734.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens KN400]
          Length = 670

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/712 (35%), Positives = 383/712 (53%), Gaps = 44/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A   +++L  E+  H+  YY   +P I D+EYD L R    +   FPDLA    P
Sbjct: 1   MDKQTAADRVAALRTELERHNRLYYAEDRPEITDAEYDLLFRELVDLETRFPDLAA---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +VTH IP LSLE  +   ++  F  R+ RF     D  I +  E
Sbjct: 58  DSPTQRVGGAPLDKFEQVTHRIPMLSLENAFTDVEIADFDDRVKRFLGLHGDVEIDYVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190
           PK+DG  + + YE+G     + RGDG  GE+V+  ++ +  IP  L     PE++EVRGE
Sbjct: 118 PKMDGLAVELVYERGILTVGSTRGDGVVGENVTHNLKTVRGIPLRLRCEQPPELLEVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEI 249
           VY+    F  LN +    G  P+ANPRNAA+G +R+L+     R  L  F +  G+    
Sbjct: 178 VYLPLAAFQRLNAQREEEGEPPFANPRNAAAGSIRQLDSRITARRPLAIFCYAPGEVRGA 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E L ++   G PVN  +R       I++YY EM   R +LPY+IDG+V KVD F
Sbjct: 238 SFAAQTEFLDRIGEWGLPVNPLIRPVKGVAEILAYYREMTERRDSLPYEIDGVVVKVDSF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LGE++RSPRW ++ KF  +QA T + DI   +GRTG++TP A L PV + G  ++
Sbjct: 298 ALQRELGEKSRSPRWAVAVKFPPRQAVTVVEDIVPSVGRTGVITPTANLRPVEVSGVTVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR+GD V+++RAG+VIP VV ++  +R    +P  
Sbjct: 358 RATLHNWEEMER-----------KDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERPLP 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S VV+  +        A RC G L+C AQ  E + HF SRDA ++EGLG++
Sbjct: 407 IPAVCPECGSEVVKIPDE------VAVRCMG-LSCPAQIRESIIHFASRDAMDMEGLGEK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   +       ++  AD++TL + Q             GD    NL ++I   +   
Sbjct: 460 YIEQLLR----LGLVKNVADLYTLTKDQ------FMQFDRMGDKLAENLLNAIEASKQRE 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFIF+LGIRHVG   A+ LA  + S +N  +     +          + +  VG  +A
Sbjct: 510 LSRFIFALGIRHVGEHTAKLLAGAFGSIENLERATEEEL----------LSIREVGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++I+ F++N  N   +   + +        EK V      K  VFTG L +  R +AQ+ 
Sbjct: 560 RSIITFFRNEGNRETIRR-MFKAGVRPTAEEKKVGGRFTGKTFVFTGALTRFSRPEAQKM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           V + G   +  +S+KTD ++ G   GSKL+KA+QLGV+++ E++FL +L++ 
Sbjct: 619 VEKEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVRVLTEDEFLAMLEEG 670


>gi|323526494|ref|YP_004228647.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1001]
 gi|323383496|gb|ADX55587.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1001]
          Length = 688

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/711 (36%), Positives = 390/711 (54%), Gaps = 49/711 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +  + L  E+   +  YY   +P + D+EYD L +  ++I    PDL     P+ P  +
Sbjct: 15  AERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAQHPDLIV---PDSPTQR 71

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTLEPKI 134
           +GGE       V H  P LSL   +  ED+  F  R+              + +  E K 
Sbjct: 72  VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGNNAKEPPVPVDYATELKF 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  I++RY  G FV AA RGDG +GE+V+  IR + +IP  L    +P I++VRGEV +
Sbjct: 132 DGLAISLRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLKLKGKRVPHILDVRGEVLM 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FA 251
            K DF  LN+   A G K +ANPRNAA+G LR+L+P     R L+FF +G+G    +   
Sbjct: 192 FKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMEMP 251

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E+L   + LG PVN+         G+++++  +   R  LPYDIDG+VYKV+    
Sbjct: 252 ATHSELLDWYKELGLPVNSERAVVKGAEGLLAFFRAVGEKRDKLPYDIDGVVYKVNRRDE 311

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q  LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNA
Sbjct: 312 QDALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++  R  DA+ F  P
Sbjct: 372 TLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLERRPDDAREFVMP 420

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +
Sbjct: 421 THCPVCGSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKII 474

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D   +       +R PAD+F L        + +  +  F D S  NL DS+ K ++ +L 
Sbjct: 475 DQLVEQN----LVRTPADLFNL------GFSTLAELDRFADKSAQNLLDSLEKAKHTTLA 524

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIRHVG   A+ LAK++ S     +              +L+ V  VG ++A++
Sbjct: 525 RFIYALGIRHVGESTAKDLAKHFGSLDPIMEA----------SVEALLEVNDVGPVVAES 574

Query: 612 IVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           I +F+    N   +E L        P      K     +  K +V TGTL  + R +A+E
Sbjct: 575 IHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGTLPTLAREEAKE 634

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 635 MLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKLLE 685


>gi|295676829|ref|YP_003605353.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
 gi|295436672|gb|ADG15842.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
          Length = 687

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/722 (35%), Positives = 392/722 (54%), Gaps = 49/722 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + + +     +  + L  E+ + +  YY   +P + D+EYD L +  + I    PDL   
Sbjct: 6   VPSFATSAPAERAAWLRAELEHANYAYYVLDQPDLPDAEYDKLFKELERIEAEHPDLIV- 64

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--- 125
             P+ P  ++GGE       V H  P LSL   +  ED+  F  RI              
Sbjct: 65  --PDSPTQRVGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRIGDALGNNASEPPVP 122

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
           + +  E K DG  I++RY  G FV A+ RGDG +GE+V+  +R I +IP  L    +P +
Sbjct: 123 VDYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPHV 182

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           ++VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+      R L+FF +G+
Sbjct: 183 LDVRGEVLMFKRDFERLNERQRAAGQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGI 242

Query: 244 GKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G    I       E+L   + +G PVN          G++ +++ +   R  LPYDIDG+
Sbjct: 243 GVLDGIEMPPTHSELLDWYKEMGLPVNGERAVVQGAKGLLGFFHAVGEKRDRLPYDIDGV 302

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV 
Sbjct: 303 VYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVF 362

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R 
Sbjct: 363 VGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDRRP 411

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            DA+ F  P+ CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A +
Sbjct: 412 TDAREFVMPTQCPVCGSAIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALD 465

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG++ +D   +       +R PAD+F L          +  +  F D S  NL DS+
Sbjct: 466 IDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFADKSAQNLLDSL 515

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K ++ +L RFI++LGIRHVG   A+ LAK++ S           +          + V 
Sbjct: 516 EKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASLEAL----------LEVN 565

Query: 603 LVGDIIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            VG ++A++I +F+    N   +E   A  +   P      K     +  + +V TGTL 
Sbjct: 566 DVGPVVAESIHQFFAEDHNRTVIEQLRAPGRVTWPEGPPAPKAPQGVLAGQTVVLTGTLP 625

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + R  A+E +   GA V+  +S+KT  ++ G + GSKL KA++LG+ +++E+    LL+
Sbjct: 626 NLSREDAKEMLEAAGAKVAGSVSKKTSYVVAGADAGSKLAKAEELGIPVLDEDGMRKLLE 685

Query: 720 QY 721
            +
Sbjct: 686 GH 687


>gi|260769097|ref|ZP_05878031.1| DNA ligase [Vibrio furnissii CIP 102972]
 gi|260617127|gb|EEX42312.1| DNA ligase [Vibrio furnissii CIP 102972]
          Length = 669

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/711 (35%), Positives = 390/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   + L+ L+  + YH   YY    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MQNVEQRLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEAQHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG       +VTH IP LSL+  ++ ++L  F  R+    +     +  F  EPK
Sbjct: 58  PSQRVGGAPLAGFEQVTHEIPMLSLDNAFDDDELNSFHRRMGD--RVLAAKTAKFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ Y  G  V AA RGDG +GE+++  +R I +IP  L     P  IEVRGEV+
Sbjct: 116 LDGLAVSLLYVDGVLVQAATRGDGTTGENITENVRTIKSIPLRLQGTGWPTRIEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K  F  +N E +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEKMNAEALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVIQGGTL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE   +++  G P++   ++  +   + +YY ++ + RS LPY+IDG+V KVD+ +
Sbjct: 236 VDSHYERFLQLKGWGLPMSPETKRVESLDEVKAYYQDIMTRRSELPYEIDGVVIKVDDIA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQEQLGFVARAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD V+++RAG+VIP++V ++   R   A+   F
Sbjct: 356 ATLHNADEIERL-----------GVKIGDTVVIRRAGDVIPQIVSVVNELRPETAREILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 405 PAQCPVCQSDVERVEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ +++N  +  +L
Sbjct: 459 IEQLVDKEM----VSTPADLFRLRAGELTILERM------GPKSAQNIVNALNTAKATTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGIR VG   A +LA ++L+     +               LI VP VG I+A 
Sbjct: 509 PRFLYSLGIREVGEATAMNLAHHFLTLDAIREAT----------IEQLIEVPDVGTIVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   VE L+       +I     +    +  K +V TGTL ++ R  A+ 
Sbjct: 559 HVHAFFTQERNQKVVEELIALGIHWQAIAPKTDDEPQPLAGKVVVLTGTLSQLSRSDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KAQ+LG++I +E+  + +++
Sbjct: 619 ALQALGAKVTGSVSKNTDILFAGEAAGSKLAKAQELGIEIRDEQDLIAMIR 669


>gi|315180839|gb|ADT87753.1| DNA ligase [Vibrio furnissii NCTC 11218]
          Length = 669

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/711 (35%), Positives = 389/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   + L+ L+  + YH   YY    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MQNVEQRLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEARHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG       +VTH IP LSL+  ++ ++L  F  R+    +     +  F  EPK
Sbjct: 58  PSQRVGGAPLAGFEQVTHEIPMLSLDNAFDDDELNSFHRRMGD--RVLAAKTAKFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ Y  G  V AA RGDG +GE+++  +R I +IP  L     P  IEVRGEV+
Sbjct: 116 LDGLAVSLLYVDGVLVQAATRGDGTTGENITENVRTIKSIPLRLQGTGWPTRIEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K  F  +N E +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEKMNAEALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVIQGGTL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE   +++  G P++   ++  +   +  YY ++ + RS LPY+IDG+V KVD+ +
Sbjct: 236 VDSHYERFLQLKGWGLPMSPETKRVASLDEVKVYYQDIMTRRSELPYEIDGVVIKVDDIA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQEQLGFVARAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD V+++RAG+VIP++V ++   R   A+   F
Sbjct: 356 ATLHNADEIERL-----------GVKIGDTVVIRRAGDVIPQIVSVVNELRPETAREILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 405 PAQCPVCQSDVERIEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ +++N  +  +L
Sbjct: 459 IEQLVDKEM----VSTPADLFRLRAGELTVLERM------GPKSAQNIVNALNTAKATTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGIR VG   A +LA ++L+     +               LI VP VG I+A 
Sbjct: 509 PRFLYSLGIREVGEATAMNLAHHFLTLDAIREAT----------IEQLIEVPDVGTIVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   VE L+       +I     +    +  K +V TGTL ++ R  A+ 
Sbjct: 559 HVHAFFAQERNQKVVEELIALGIHWQAIAPKTDDEPQPLAGKVVVLTGTLSQLSRSDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KAQ+LG++I +EE  + +++
Sbjct: 619 ALQALGAKVTGSVSKNTDILFAGEAAGSKLAKAQELGIEICDEEDLIAMIR 669


>gi|229846132|ref|ZP_04466244.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
 gi|229811136|gb|EEP46853.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
          Length = 670

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/709 (34%), Positives = 397/709 (55%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KQLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG  GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGTIGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYQDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW  ++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWATAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGTKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I G+  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGNAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|113969850|ref|YP_733643.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
 gi|113884534|gb|ABI38586.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
          Length = 690

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/716 (34%), Positives = 393/716 (54%), Gaps = 51/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++   A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    + 
Sbjct: 18  QAVTPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA- 76

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 77  --DSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDR-----VGEVSFC 129

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L   N PE++EVR
Sbjct: 130 CEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVR 189

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG   
Sbjct: 190 GEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVE 249

Query: 248 EI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  YE LQ+++  G PV++ ++  +    + +YY ++ + RS LP++IDG+V 
Sbjct: 250 PTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRSYLPFEIDGVVM 309

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 310 KVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 369

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  D
Sbjct: 370 GVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPED 418

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+  +FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 419 AKAIAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDID 472

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 473 GMGDKIVEQLIDKE----LVQSPADLFKLPASMMTMLDRM------GMKSATNLAQAIEA 522

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S +          A        LI+V  +
Sbjct: 523 AKTTTLPRFLYALGIREVGEATASNLATHFGSLE----------ALRVATIEQLIQVEDI 572

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G+++AQ +  F+  P N+  ++AL+   V+             ++ +  V TGTL ++ R
Sbjct: 573 GEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNR 632

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 633 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 688


>gi|117920017|ref|YP_869209.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3]
 gi|117612349|gb|ABK47803.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3]
          Length = 691

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/716 (34%), Positives = 392/716 (54%), Gaps = 51/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++   A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    + 
Sbjct: 18  QAVTPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA- 76

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 77  --DSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDR-----VGEVSFC 129

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L   N PE++EVR
Sbjct: 130 CEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVR 189

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG   
Sbjct: 190 GEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVE 249

Query: 248 EI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  YE LQ+++  G PV++ ++  +    + +YY ++ + R+ LP++IDG+V 
Sbjct: 250 PTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVM 309

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 310 KVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 369

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I  L            + VGD V+++RAG+VIP++V I+   R  D
Sbjct: 370 GVTVSNATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPED 418

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+  +FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 419 AKAIAFPQHCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 472

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 473 GMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GIKSATNLALAIEA 522

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S +          A        LI+V  +
Sbjct: 523 AKTTTLPRFLYALGIREVGETTAANLATHFGSLE----------ALRVATIEQLIQVEDI 572

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G+++AQ +  F+  P N+  ++AL+   V+             ++ +  V TGTL ++ R
Sbjct: 573 GEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIAAPSADEQPLKGQTWVLTGTLNQLNR 632

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 633 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 688


>gi|254785950|ref|YP_003073379.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
 gi|237685872|gb|ACR13136.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
          Length = 676

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/710 (35%), Positives = 387/710 (54%), Gaps = 45/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   +  + L Q +++H+  YY   +P I D+EYD L      +   FP L   E  + P
Sbjct: 9   EAVMRRCNELHQLLNHHNRQYYLLDEPEIPDAEYDRLFHELKTLEAEFPQL---ETADSP 65

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G E       V H +P LSL+  ++ ED+R F  RI        D  + +  EPK 
Sbjct: 66  TQRVGAEPLKGFSSVQHEVPMLSLDNAFSDEDMRAFEKRIQDRLAS--DAELEYACEPKF 123

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ Y  G+    A RGDG +GED++  +R I ++P  L   N+P + EVRGEV +
Sbjct: 124 DGIAVSLLYRDGRLQRGATRGDGATGEDITQNVRTIGSVPLKLSGDNVPAVFEVRGEVVM 183

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F  LN      G + + NPRNAA+G LR+L+P+    R L FF + +G        
Sbjct: 184 PRAGFAKLNAAAQERGDRLFVNPRNAAAGALRQLDPSITAKRPLVFFAYSVGYVEGELPP 243

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +  L  +  LGF V      A+   G ++YY ++   R+ L YDIDG+V+KV+++ LQ
Sbjct: 244 THFGTLDLLEKLGFVVAGERALAHGAGGCLAYYRDLGEKRADLGYDIDGIVFKVNDYGLQ 303

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I+HKF  ++  T L D++ Q+GRTG +TPVARLEPV +GG  ++NAT
Sbjct: 304 NRLGFVSRAPRWAIAHKFPAQEEMTVLNDVEFQVGRTGAVTPVARLEPVFVGGVTVSNAT 363

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L            +++GD+V+V+RAG+VIP++V ++++ R   A+   FP+
Sbjct: 364 LHNRDEIERL-----------GVKIGDQVVVRRAGDVIPQIVSVVLSARPQHAKEIVFPA 412

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S+V            A  RCTGGL C+AQ+ E +KHFVSR A +IEGLG + ++
Sbjct: 413 NCPVCGSQVEVLEGE------AVARCTGGLVCAAQRKEAIKHFVSRTAMDIEGLGDKLVE 466

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      I   ADI+ L+           N+   GD S  N+ D+I K ++ +L R
Sbjct: 467 QLVGLGH----IEHIADIYRLEHEVLA------NMERMGDKSAQNVIDAIEKSKSTTLPR 516

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+F+LGIR VG   AR++A+++   +N              D  +L+ V  VG I+A  I
Sbjct: 517 FLFALGIREVGQATARNIAQHFGMLKNLMDA----------DQEALVAVDDVGPIVAHHI 566

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F+Q   N   +  L +              S  ++ K  V TGTL+ + R +A+E + 
Sbjct: 567 FDFFQQQGNRAQIALLQEAGVHWPESAPVAAESLPLDGKTYVLTGTLETLSRDEAKEKLL 626

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            LGA V+  +S+KTD ++ G   GSKL KA+ LG+++++E  F+ LL  +
Sbjct: 627 ALGAKVTGSVSKKTDCVVAGPGAGSKLAKAESLGIEVLDEAAFVALLDSF 676


>gi|312796238|ref|YP_004029160.1| NAD-dependent DNA ligase [Burkholderia rhizoxinica HKI 454]
 gi|312168013|emb|CBW75016.1| NAD-dependent DNA ligase (EC 6.5.1.2) [Burkholderia rhizoxinica HKI
           454]
          Length = 681

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/724 (36%), Positives = 399/724 (55%), Gaps = 52/724 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +    P    S ++  +  + L  E+   +  YY   +P I D+EYD L +  + I  
Sbjct: 1   MSRMMFPP----SADRPAERAAWLRTELDRANHAYYVLDRPEIPDAEYDKLFKELEQIEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GG +      + H +P LSL   +   D+  F  R+    Q 
Sbjct: 57  DHPDLI---TPDSPTQRVGGAVAEGFAPIVHDVPMLSLNNGFEDSDVDAFDKRVSDVLQ- 112

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+A +R I ++P  L+ N
Sbjct: 113 --HGDVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTANVRTIRSLPLTLNGN 170

Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
            +P++I+VRGEV + K DF  LN      G++ +ANPRNAA+G LR+L+      R L+F
Sbjct: 171 AVPKVIDVRGEVLMFKRDFERLNARQREAGQREFANPRNAAAGSLRQLDSRITAKRPLSF 230

Query: 239 FVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           F +G+G    +        +L     +G PVN          G++ ++  + + R++LPY
Sbjct: 231 FAYGIGVLDGVPMPDTHSALLDWYVNMGLPVNKERAVVRGAAGLLVFFRGVGARRASLPY 290

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A TRLL I++Q+GRTG +TPVAR
Sbjct: 291 DIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAEEALTRLLAIEVQVGRTGAITPVAR 350

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEP+ +GGA +TNATLHNED ++            +DI +GD V+V+RAG+VIP+VV  I
Sbjct: 351 LEPIFVGGATVTNATLHNEDEVRR-----------KDILIGDTVIVRRAGDVIPEVVGAI 399

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R  DA+PF+ P+ CP+C S + R  +       A  RCTGGL C+AQ+ + L HF  
Sbjct: 400 KERRPVDARPFTMPTHCPVCGSAIERLPDE------AIARCTGGLVCAAQRKQALWHFAQ 453

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A +I+GLG++ +D   +       IR PAD+F+L          +  +  F D S  N
Sbjct: 454 RRALDIDGLGEKIIDQLVEQS----LIRTPADLFSL------GFATVAQLDRFADKSAQN 503

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L DS+ + R+ +L RFI++LGIRHVG   AR LA+++ S           +         
Sbjct: 504 LIDSLERARHTTLPRFIYALGIRHVGEATARDLARHFGSLNALIDASEEAL--------- 554

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFT 655
            + V  VG ++A+AI  F+  P N   +E L       P      +  +  +    +V T
Sbjct: 555 -LEVNDVGPVVAEAIRHFFSEPHNRMVIEQLRAAGVQWPEGPPAPRKPAGPLAGMTVVLT 613

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KT+ ++ G + GSKL KA++LG+ I++EE   
Sbjct: 614 GTLPTLSREAAKERLEAAGAKVAGSVSKKTNYVVAGADAGSKLTKAEELGIPIVDEEGMR 673

Query: 716 FLLQ 719
            LL+
Sbjct: 674 RLLE 677


>gi|197336238|ref|YP_002156719.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11]
 gi|254781450|sp|B5FGU7|DNLJ_VIBFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197317728|gb|ACH67175.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11]
          Length = 668

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/713 (36%), Positives = 401/713 (56%), Gaps = 50/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SIEQ    L  L+Q+++YH   YY    P + D+EYD + +   +I    P+L      
Sbjct: 1   MSIEQT---LDELKQQLNYHAYRYYVEDSPELPDAEYDRMMQELLSIESEHPELVTV--- 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      ++ H IP LSL+  ++ E+L  F  R+      K  +   F  E
Sbjct: 55  DSPSQRVGGEALDGFTQIQHEIPMLSLDNAFSDEELEAFEKRMNDRLISKPVS--LFCCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  +++ Y  GK V A  RGDG +GE+++  +R I  IP  L     P  +EVRGE
Sbjct: 113 PKLDGLAVSLLYVNGKLVQAGTRGDGTTGENITENVRTIRCIPLTLQGEGWPTRLEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           V++ K  F ALN+  +  G KP+ANPRNAA+G LR+L+     TR L+F+ + +G     
Sbjct: 173 VFMPKAGFEALNERALKRGEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVIEGG 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 Y+   +++  G P+    +Q  +   + +YY ++   R  L Y+IDG+V KVD+
Sbjct: 233 ELETSHYQRFVQLKSWGLPMCEETKQCYSLTEVKAYYKDILKRRDALKYEIDGVVIKVDD 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 293 IALQEQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            + +GD V+++RAG+VIP++V ++   R  D++  
Sbjct: 353 SNATLHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKAI 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P+ CP+C S + R          A  RC  GL C AQ+ E LKHFVSR A +++GLG 
Sbjct: 402 VYPTHCPVCGSNLERVEGE------AVTRCGAGLVCQAQRKEALKHFVSRKALDVDGLGD 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L     T   ++      G  S  N+ D++NK +  
Sbjct: 456 KVVEQLVDKEM----VETPADLFKLSAGVLTVLERM------GPKSAQNVVDALNKAKAT 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA ++ + +          A     +  LI V  VGDI+
Sbjct: 506 TLPRFLYSLGIREVGEATAANLAAHFYTLE----------AIQVATFEQLIEVSDVGDIV 555

Query: 609 AQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ ++ F+  P N   ++ L +     P I   +++V   +  K +V TGTL K++R++A
Sbjct: 556 AKHVLNFFAEPHNKTVIDDLQEMGIHWPEIKALDESVPQPLAGKVVVLTGTLHKLKRNEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +LGA V+  +S+KTDI+  G+  GSKL KA++LGV++MNEEQ + LL 
Sbjct: 616 KAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKAEELGVEVMNEEQLIELLN 668


>gi|269968476|ref|ZP_06182487.1| DNA ligase [Vibrio alginolyticus 40B]
 gi|269826910|gb|EEZ81233.1| DNA ligase [Vibrio alginolyticus 40B]
          Length = 690

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/710 (35%), Positives = 388/710 (54%), Gaps = 47/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL      + P
Sbjct: 23  ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITV---DSP 79

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+   +  +VTH +P LSL+  ++  +L  F  R       +      +  EPK+
Sbjct: 80  SQRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSQSVKE--YCCEPKL 137

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  N  P  +EVRGEV++
Sbjct: 138 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVFM 197

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
            K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G       A
Sbjct: 198 PKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGAELA 257

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE   +++  G P+    ++  +   + +YY ++   R  LPY+IDG+V K+D+ ++
Sbjct: 258 ASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDDIAV 317

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 318 QERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 377

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            +++GD V+++RAG+VIP+VV +I   R   A+   FP
Sbjct: 378 TLHNADEIERLQ-----------VKIGDHVVIRRAGDVIPQVVSVIKERRPETARDIVFP 426

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RC GGL C AQ+ + LKHFVSR A +++GLG + +
Sbjct: 427 TQCPVCGSHVERIEGE------AVTRCMGGLVCQAQRKQALKHFVSRKALDVDGLGDKVI 480

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     ++ PAD+F L     T   ++      G  S  N+ +++ K +  +L 
Sbjct: 481 EQLVDREM----VKTPADLFKLSAGILTVLDRM------GPKSAQNIVNALEKSKETTLP 530

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA ++ +                     LI V  +G ++AQ 
Sbjct: 531 RFLYSLGIREVGEATAANLAMHFKTLGAIQNATEE----------QLIEVQDIGAVVAQH 580

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   V+ LL++    P I   E+     +E K +V TGTL ++ R +A+E 
Sbjct: 581 ITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTEAKEA 640

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 641 LQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELMN 690


>gi|325982988|ref|YP_004295390.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212]
 gi|325532507|gb|ADZ27228.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212]
          Length = 677

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/715 (35%), Positives = 395/715 (55%), Gaps = 51/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE+ R  +  L  EI  H+  YY    P I D+EYD L R    I   +P L  +   + 
Sbjct: 5   IEKIRHRIQDLRAEIELHNYRYYVLDTPTIPDAEYDRLLRELQHIEQDYPQLITA---DS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H  P LSL   ++  ++  F  R+         +++ + +EPK
Sbjct: 62  PTQRVGAAPLKAFSQVVHRRPMLSLSNAFDDAEVEAFDRRVCEGL---AVDNVEYAVEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192
            DG  +++ YE G F   A RGDG++GE+++  +R I +IP  L  LN P  +EVRGEV 
Sbjct: 119 FDGLAVSLCYENGIFKTGATRGDGYTGENITLNLRTIRSIPLSLPVLNPPSWLEVRGEVL 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE--I 249
           + + DFLALN    A G K +ANPRNAA+G LR+L+P    TR L FF +G+G+  +  +
Sbjct: 179 MLRADFLALNQRQSAKGEKEFANPRNAAAGSLRQLDPGITATRRLTFFAYGVGEYQDCHM 238

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  ++  +  L FP+            +++YY  ++  R  LPYDIDG+VYKV+  
Sbjct: 239 PLDKHSHVMAYLASLHFPIAKEGGVVKGLQELLAYYQTIEVQRVRLPYDIDGVVYKVNSL 298

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q++LG  +R+PR+ ++HKF  ++A T+L  I+IQ+GRTG LTPVARL+PV +GG  +T
Sbjct: 299 AQQERLGFVSRAPRFALAHKFPAQEAITQLSGIEIQVGRTGALTPVARLKPVFVGGVTVT 358

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+            +D+R+GD V+V+RAG+VIP++V +I+ +R  D Q F 
Sbjct: 359 NATLHNADEIER-----------KDVRIGDTVIVRRAGDVIPEIVSVILEKRPVDTQVFV 407

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C ++ VR ++       A  RCTGGL C AQ+ + + HF SR A +IEGLG +
Sbjct: 408 MPEHCPVCGAKAVRLVDE------AVSRCTGGLFCPAQRKQAILHFASRRAMDIEGLGDK 461

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++           IR PAD++ L          + ++    + S  N+  +I K ++ +
Sbjct: 462 LVEQMVDRAI----IRTPADLYKL------GLGALADLERMAEKSAGNILRAIEKSKHTT 511

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI++LGIR+VG   A+ LA +  S     +  +  +           ++P VG ++A
Sbjct: 512 LARFIYALGIRNVGEATAKDLAAHCGSLDRLIEAGSERLQ----------QIPDVGPVVA 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQKIQRHK 665
           Q+I +F+    N   +E L             +V    +  ++ K  V TGTL  + R +
Sbjct: 562 QSIADFFAEAHNREVIEQLRACGVYWNEHEGISVLAGEARPLQGKTFVLTGTLPIMSREE 621

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E +  LG  VS  +S+KTD ++VG +PGSK +KA  LG+ +++E   L LLQ+
Sbjct: 622 AKEKIELLGGKVSGSVSKKTDYVVVGADPGSKYDKALSLGIAVLDEAGLLELLQE 676


>gi|166216287|sp|Q0HK31|DNLJ_SHESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 688

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/716 (34%), Positives = 393/716 (54%), Gaps = 51/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++   A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    + 
Sbjct: 16  QAVTPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA- 74

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 75  --DSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDR-----VGEVSFC 127

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L   N PE++EVR
Sbjct: 128 CEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG   
Sbjct: 188 GEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVE 247

Query: 248 EI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  YE LQ+++  G PV++ ++  +    + +YY ++ + RS LP++IDG+V 
Sbjct: 248 PTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRSYLPFEIDGVVM 307

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 308 KVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 367

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  D
Sbjct: 368 GVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPED 416

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+  +FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 417 AKAIAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDID 470

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 471 GMGDKIVEQLIDKE----LVQSPADLFKLPASMMTMLDRM------GMKSATNLAQAIEA 520

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S +          A        LI+V  +
Sbjct: 521 AKTTTLPRFLYALGIREVGEATASNLATHFGSLE----------ALRVATIEQLIQVEDI 570

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G+++AQ +  F+  P N+  ++AL+   V+             ++ +  V TGTL ++ R
Sbjct: 571 GEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNR 630

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 631 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 686


>gi|166216286|sp|A0KVI4|DNLJ_SHESA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 689

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/716 (34%), Positives = 392/716 (54%), Gaps = 51/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++   A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    + 
Sbjct: 16  QAVTPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA- 74

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 75  --DSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDR-----VGEVSFC 127

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L   N PE++EVR
Sbjct: 128 CEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG   
Sbjct: 188 GEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVE 247

Query: 248 EI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  YE LQ+++  G PV++ ++  +    + +YY ++ + R+ LP++IDG+V 
Sbjct: 248 PTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVM 307

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 308 KVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 367

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I  L            + VGD V+++RAG+VIP++V I+   R  D
Sbjct: 368 GVTVSNATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPED 416

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+  +FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 417 AKAIAFPQHCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 470

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 471 GMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GIKSATNLALAIEA 520

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S +          A        LI+V  +
Sbjct: 521 AKTTTLPRFLYALGIREVGETTAANLATHFGSLE----------ALRVATIEQLIQVEDI 570

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G+++AQ +  F+  P N+  ++AL+   V+             ++ +  V TGTL ++ R
Sbjct: 571 GEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIAAPSADEQPLKGQTWVLTGTLNQLNR 630

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 631 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 686


>gi|327394702|dbj|BAK12124.1| DNA ligase LigA [Pantoea ananatis AJ13355]
          Length = 672

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/712 (35%), Positives = 405/712 (56%), Gaps = 49/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ ++ L   + +H+  Y+    P + D+EYD L R    +    PDL     P+ 
Sbjct: 1   MKSVQEHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G    +   +V H +P LSL+  ++    R F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLMVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDD--LVYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE++++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           +++N F  LN E      K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MTQNGFEKLNAEARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ +R  +     +++Y+E+ + R+ L +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW ++ KFA ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEKLGFVARAPRWAVAFKFAAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++V+ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A ++EG+G + 
Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVEGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+F L R   T   ++         S  N+ D++ K ++ +L
Sbjct: 459 IDQLVEKE----YVKTPADLFRLTRETLTGLDRMGA------KSAQNVVDALEKAKSTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++   Q               D  +LI V  VG ++A+
Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLDALIAVQDVGTVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F +   N   +  L++++  +  +      + + S    K +V TG+L ++ R  A
Sbjct: 559 HVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +T+LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 619 KARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670


>gi|260774893|ref|ZP_05883794.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609148|gb|EEX35306.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 669

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/709 (36%), Positives = 397/709 (55%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++ ++ L+ L + + YH   YY    P + D+EYD L R    +    PDL      + P
Sbjct: 3   QEIQERLNQLRETLHYHGVKYYVEDNPEVPDAEYDRLMRELLELEAEHPDLV---SIDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+       VTH IP LSL+  ++ E+L  F  R+       + N   F  EPK+
Sbjct: 60  SQRVGGQPLDGFQSVTHEIPMLSLDNAFDDEELESFHKRMSDRIPTAEFN--VFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I +IP  LS    P+ IEVRGEV++
Sbjct: 118 DGLAVSLLYENGILVQAATRGDGTTGENITENVRTIKSIPLKLSGQGWPQRIEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251
            K  F  LN +    G K + NPRNAA+G LR+L+     TR L+F+ + +G    I  +
Sbjct: 178 PKEGFDKLNQQAQKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGIALS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +  YE   +++  G P+    R+      + +YY ++   R  LPY+IDG+V KVD+ +L
Sbjct: 238 ESHYERFLQLKGWGLPMCPETRRVANLTEVKAYYQDILERREALPYEIDGVVIKVDDIAL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QEQLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            ++VGD V+++RAG+VIP++V +I   R  +A+   FP
Sbjct: 358 TLHNADEIERL-----------GVKVGDSVIIRRAGDVIPQIVSVIEERRPGNARDIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG++ +
Sbjct: 407 ERCPVCSSEVERIEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S  N+ D++N+ +  +L 
Sbjct: 461 EQLVDREM----VETPADLFKLSAGVITVLDRM------GPKSAQNVVDALNQAKLTTLP 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+Y+ +            A    +   LI V  +GDI+A  
Sbjct: 511 RFLYSLGIREVGEATAANLAQYFKTLD----------AVKAANHEQLIEVSDIGDIVASH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++ F+   +N   ++ LL +    P I    ++    +  K +V TG+L ++ R+ A+  
Sbjct: 561 VIAFFAQDKNQQVIQDLLDQGIEWPEIEEQSEDTPQPLAGKTVVLTGSLSQLSRNDAKSA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  + L+
Sbjct: 621 LQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLVDLI 669


>gi|138893932|ref|YP_001124385.1| NAD-dependent DNA ligase LigA [Geobacillus thermodenitrificans
           NG80-2]
 gi|166215760|sp|A4IJY6|DNLJ_GEOTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|134265445|gb|ABO65640.1| DNA ligase [Geobacillus thermodenitrificans NG80-2]
          Length = 670

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/717 (36%), Positives = 401/717 (55%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA++  + L + ++ +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAKRRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KVTH +P +SL   +N  DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVTHRVPMMSLANAFNEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L LN P  +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLNEPVSLEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P     R L+ FV+GL    E+ 
Sbjct: 171 FMPKASFLRLNEERQARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     L  ++ LGF VN   R+  T   ++++ NE K  R  LPY+IDG+V KVD F+
Sbjct: 231 IESHSAALSYLQSLGFKVNPERRRCATIDEVIAFVNEWKEKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++  T L+ I++ +GRTG +TP A LEPV + G  +  
Sbjct: 291 QQRQLGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGAVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF+ 
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDEVPFTM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNP-KCPAQLRERLIHFASRSAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +   AD++ L + Q     ++      G+ S  NL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVHDVADLYQLTKEQLVGLERM------GEKSAANLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +       + +          + VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEAATKDEL----------MAVPEIGEKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I  ++  P  +  +  L         +      E   SS +  K +V TG L  + R++
Sbjct: 553 SITTYFSQPEAVELLNELRTYGVNMAYKGRKRTAETPASSVLAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TDI+I G++ GSKL+KAQQLG++I +E +FL  + +  
Sbjct: 613 AKEQIERLGGRVTGSVSRSTDIVIAGEDAGSKLDKAQQLGIEIWDETRFLQEISREE 669


>gi|291618312|ref|YP_003521054.1| LigA [Pantoea ananatis LMG 20103]
 gi|291153342|gb|ADD77926.1| LigA [Pantoea ananatis LMG 20103]
          Length = 672

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/712 (35%), Positives = 405/712 (56%), Gaps = 49/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ ++ L   + +H+  Y+    P + D+EYD L R    +    PDL     P+ 
Sbjct: 1   MKSVQEHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G    +   +V H +P LSL+  ++    R F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLMVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDD--LVYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE++++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           +++N F  LN E      K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MTQNGFEKLNAEARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ +R  +     +++Y+E+ + R+ L +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW ++ KFA ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEKLGFVARAPRWAVAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++V+ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A ++EG+G + 
Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVEGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+F L R   T   ++         S  N+ D++ K ++ +L
Sbjct: 459 IDQLVEKE----YVKTPADLFRLTRETLTGLDRMGA------KSAQNVVDALEKAKSTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++   Q               D  +LI V  VG ++A+
Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLDALIAVQDVGTVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F +   N   +  L++++  +  +      + + S    K +V TG+L ++ R  A
Sbjct: 559 HVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +T+LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 619 KARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670


>gi|194289797|ref|YP_002005704.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
 gi|254781303|sp|B3R2C2|DNLJ_CUPTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193223632|emb|CAQ69639.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
          Length = 709

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/709 (35%), Positives = 381/709 (53%), Gaps = 54/709 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L +E+  H+  YY    P + D+EYDAL     A+    P+L   + P+ P  ++G
Sbjct: 27  RVAWLREELDRHNYQYYVLDAPTVPDAEYDALFSELMALELEHPEL---QTPDSPTQRVG 83

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----------NSIFF 128
           GE   +   V H +P LSL   +  ED+  F  R  +   +              +++ +
Sbjct: 84  GEPLSAFDSVRHRVPMLSLNNAFADEDVLNFDRRCAQGLGRTAPAAGEADLFSAADAVEY 143

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E K DG  +++RYE G+ V AA RGDG +GEDV+  +R I  IP  L    P ++EVR
Sbjct: 144 ACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLKLRGQAPAVLEVR 203

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTS 247
           GEV++ + DF  LN      G K + NPRNAA+G LR+L+P    R  L+FF +GLG+  
Sbjct: 204 GEVFMFRRDFDKLNARQAEAGEKTFVNPRNAAAGSLRQLDPRITARRPLSFFAYGLGELQ 263

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +        ML     LG PV           G++ +Y ++   R  LPYDIDG+VYKV
Sbjct: 264 GVERPPTHSAMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGKRRDDLPYDIDGVVYKV 323

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  +R+PR+ ++HKF  ++ +T + DI++Q+GRTG +TPVARL PV +GG 
Sbjct: 324 NALAEQERLGFVSRAPRFALAHKFPAQEMTTVVEDIEVQVGRTGAITPVARLRPVFVGGV 383

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +TNATLHNED I+            +D+ VGD V+V+RAG+VIP+VV ++   R  DA+
Sbjct: 384 TVTNATLHNEDEIRR-----------KDVHVGDTVIVRRAGDVIPEVVAVVAERRPADAR 432

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P+ CP+C S + +  +       A  RCTGGL C+AQ+ + L HF  R A +IEGL
Sbjct: 433 AFVMPTACPVCGSHIEKLEDE------AIARCTGGLICAAQRKQSLLHFAQRRAMDIEGL 486

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           +R PAD++ L   +  +  ++       D S  NL  +I+K R
Sbjct: 487 GDRLVEQLVDQ----GIVRTPADLYKLGVAKLAALERMA------DKSAANLVAAIDKSR 536

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             ++ RFIF+LGIRHVG   A+ LA+++                   D  +L+ V  VG 
Sbjct: 537 ATTMNRFIFALGIRHVGEATAKDLARHFGKLDALMAA----------DEAALLEVNDVGP 586

Query: 607 IIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++AQ+I  F+  P N+  +E L    V            + +  K  V TGTL  + R  
Sbjct: 587 VVAQSIAHFFAEPHNVEVIEQLRAAGVHWPESEPVAKSPAPLSGKTFVLTGTLPTLSRED 646

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           A+E +   GA V+  +S+KTD ++ G   GSKL+KA+ LGV +++E   
Sbjct: 647 AKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAGM 695


>gi|328473436|gb|EGF44284.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus 10329]
          Length = 670

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/710 (35%), Positives = 391/710 (55%), Gaps = 47/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL      + P
Sbjct: 3   ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTV---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+      +VTH +P LSL+  ++  +L  F  R         ++   +  EPK+
Sbjct: 60  SQRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIG--GESIKQYCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L   + P  +EVRGEV++
Sbjct: 118 DGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251
            K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G       A
Sbjct: 178 PKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLA 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE   +++  G P+    ++ ++   + +YY ++   R  LPY+IDG+V K+D+ ++
Sbjct: 238 ASHYERFLQIKSWGLPMCQETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDDIAV 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QDRLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            +++GD+V+++RAG+VIP+VV +I   R   A+   FP
Sbjct: 358 TLHNADEIERLQ-----------VKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RCTGGL C AQ+ + LKHFVSR A +++GLG + +
Sbjct: 407 TQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S  N+ +++ K +  +L 
Sbjct: 461 EQLVDREM----VETPADLFKLSAGVLTVLERM------GPKSAQNIVNALEKSKLTTLP 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ S +                   LI V  +G ++A+ 
Sbjct: 511 RFLYSLGIREVGEATAANLAQHFKSLEAIQAATEE----------QLIAVQDIGVVVAKH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F++  +N   V+ LL +    P +   E+     +E K +V TGTL ++ R +A+E 
Sbjct: 561 ITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKEA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 621 LQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELIN 670


>gi|196250518|ref|ZP_03149209.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
 gi|196210008|gb|EDY04776.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
          Length = 670

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/717 (36%), Positives = 401/717 (55%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA++  + L + ++ +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAKRRATELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KVTH +P +SL   +N  DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVTHRVPMMSLANAFNEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L LN P  +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLNEPVSLEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P     R L+ FV+GL    E+ 
Sbjct: 171 FMPKASFLRLNEERQARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     L  ++ LGF VN   R+  T   ++++ NE K  R  LPY+IDG+V KVD F+
Sbjct: 231 IESHSAALSYLQSLGFKVNPERRRCATIDEVIAFVNEWKEKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++  T L+ I++ +GRTG +TP A LEPV + G  +  
Sbjct: 291 QQRQLGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGAVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF+ 
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDEVPFTM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNP-KCPAQLRERLIHFASRSAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +   AD++ L + Q     ++      G+ S  NL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVHDVADLYQLTKEQLVGLERM------GEKSAANLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +       + +          + VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEAATKDEL----------MAVPEIGEKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I  ++  P  +  +  L         +      E   SS +  K +V TG L  + R++
Sbjct: 553 SITTYFSQPEAVELLNELRTYGVNMAYKGRKRTAETPASSVLAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TDI+I G++ GSKL+KAQQLG++I +E +FL  + +  
Sbjct: 613 AKEQIERLGGRVTGSVSRSTDIVIAGEDAGSKLDKAQQLGIEIWDETRFLQEISREE 669


>gi|319897423|ref|YP_004135620.1| DNA ligase, nad(+)-dependent [Haemophilus influenzae F3031]
 gi|317432929|emb|CBY81295.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3031]
          Length = 679

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/707 (35%), Positives = 401/707 (56%), Gaps = 45/707 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 10  MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 67  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVNRIEDRLILLP-KPLTFCCEPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RG+G +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 126 LDGLAVSILYVNGELTQAATRGNGTAGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++  
Sbjct: 246 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIG 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L+           I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 366 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R      G+ VA  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 415 PTNCPVCDSQIIR----IEGETVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L     T+ T+   +   G  S  N  +S+   ++ +L
Sbjct: 469 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 518

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +            A  + +   L +VP VG+++A 
Sbjct: 519 ARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 568

Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 569 RIFIFWREAHNVAVVEDLITQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           + QLGA VS  +S KTD +I GD  G+KL KAQ+L + ++ EE+FL 
Sbjct: 629 LQQLGAKVSGSVSSKTDFVIAGDAAGAKLAKAQELNITVLTEEEFLA 675


>gi|59712497|ref|YP_205273.1| NAD-dependent DNA ligase LigA [Vibrio fischeri ES114]
 gi|75353581|sp|Q5E3L1|DNLJ_VIBF1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|59480598|gb|AAW86385.1| DNA ligase, NAD(+)-dependent [Vibrio fischeri ES114]
          Length = 668

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/713 (36%), Positives = 402/713 (56%), Gaps = 50/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SIEQ    L  L+Q+++YH   YY    P + D+EYD + ++  +I    P+L      
Sbjct: 1   MSIEQT---LDELKQQLNYHAYRYYVEDSPELPDAEYDRMMQQLLSIESEHPELVTV--- 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      ++ H IP LSL+  ++ E+L  F  R+      K  +   F  E
Sbjct: 55  DSPSQRVGGEALDGFTQIQHEIPMLSLDNAFSDEELEAFEKRMNDRLISKPVS--LFCCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  +++ Y  GK V A  RGDG +GE+++  +R I  IP  L     P  +EVRGE
Sbjct: 113 PKLDGLAVSLLYVDGKLVQAGTRGDGTTGENITENVRTIRCIPLTLQGEGWPTRLEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           V++ K  F ALN+  +  G KP+ANPRNAA+G LR+L+     TR L+F+ + +G     
Sbjct: 173 VFMPKAGFEALNERALKRGEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVIEGG 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 Y+   +++  G P+    +Q ++   + +YY ++   R  L Y+IDG+V KVD+
Sbjct: 233 ELETSHYQRFVQLKSWGLPMCEETKQCHSLTEVKAYYKDILERRDALKYEIDGVVIKVDD 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 293 IALQEQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            + +GD V+++RAG+VIP++V ++   R  D++  
Sbjct: 353 SNATLHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKAI 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP+C S + R          A  RC  GL C AQ+ E LKHFVSR A +++GLG 
Sbjct: 402 VYPIHCPVCGSNLERVEGE------AVTRCGAGLVCQAQRKEALKHFVSRKALDVDGLGD 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L     T   ++      G  S  N+ D++NK +  
Sbjct: 456 KVVEQLVDKEM----VETPADLFKLSAGLLTVLERM------GPKSAQNVVDALNKAKAT 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA ++ + +          A     +  LI V  VGDI+
Sbjct: 506 TLPRFLYSLGIREVGEATAANLAAHFYTLE----------AIQVATFEQLIEVSDVGDIV 555

Query: 609 AQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ ++ F+  P N   +E L +     P I   +++V   +  K +V TGTL K++R++A
Sbjct: 556 AKHVLNFFAEPHNKTVIEDLQEMGIHWPEIKALDESVPQPLAGKVVVLTGTLHKLKRNEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +LGA V+  +S+KTDI+  G+  GSKL KA++LGV++MNEEQ + LL 
Sbjct: 616 KAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKAEELGVEVMNEEQLIELLN 668


>gi|227328979|ref|ZP_03833003.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 684

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/727 (35%), Positives = 407/727 (55%), Gaps = 54/727 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK  +  P E   +  A   ++ L + + +H+  Y+    P I D EYD L +   ++  
Sbjct: 1   MKPVKKEPAE---VNVAALRVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKSLEA 57

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A P+L  S   + P  ++G     +  +V H +P LSL+ +++ E    F  RI    + 
Sbjct: 58  AHPELVTS---DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKN 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
            DD  + F  E K+DG  +++ YE+G  V AA RGDG +GE++++ IR +  IP  L   
Sbjct: 115 GDD--LTFCCELKLDGLAVSLLYEEGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGD 172

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           NIP  +EVRGEV++  + F  LN+E    G K +ANPRNAA+G LR+L+P    TR L F
Sbjct: 173 NIPRRVEVRGEVFMKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITATRPLTF 232

Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           F +G+G     +     +E L + +  G PV++ ++       ++ +Y +++  RS+L +
Sbjct: 233 FCYGVGLLEGGVLPASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGF 292

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V KVD   LQ++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVAR
Sbjct: 293 DIDGVVVKVDSLELQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVAR 352

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV + G +++NATLHN D I+ L            +++GDRV+V+RAG+VIP++V I+
Sbjct: 353 LEPVAVAGVIVSNATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIV 401

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            +ER    +P  FP+ CP+C S V R          A  RCT GL C AQ+ E LKHFVS
Sbjct: 402 ESERPETVRPILFPAACPVCGSDVERVEGE------AVTRCTAGLICGAQRKEALKHFVS 455

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A ++EG+G + +D   + E     ++ PAD+F L     T   ++      G  S TN
Sbjct: 456 RRALDVEGMGDKIIDQLVEKE----YVKTPADLFRLSAGIMTGLDRM------GPKSATN 505

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L +++ K ++ +L RF+++LGIR VG   A +LA ++ S +               D  +
Sbjct: 506 LVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGSLEALFAA----------DEDA 555

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKK 651
           L+ VP VG ++A  +  F +   N   +  L      +I   E      + + S    K 
Sbjct: 556 LLEVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNVEEIDSPFAGKT 615

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +V TG+L  + R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E
Sbjct: 616 VVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDE 675

Query: 712 EQFLFLL 718
            + + LL
Sbjct: 676 AEMIRLL 682


>gi|308050127|ref|YP_003913693.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799]
 gi|307632317|gb|ADN76619.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799]
          Length = 685

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/726 (34%), Positives = 385/726 (53%), Gaps = 54/726 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L P   +S  QA+  +  L Q ++ ++  YY    P + D+EYD L R   A+    P L
Sbjct: 4   LPPKNDMS--QAKDRIEQLSQLLNDYNHQYYVLDNPSVPDAEYDRLMRELQALEAEHPAL 61

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                P+ P  ++GG        V H  P LSL+   N E+   F  R+           
Sbjct: 62  ---RQPDSPTQRVGGAPAGQFQSVAHLKPMLSLDNAMNEEEFSAFHQRLADRLGS---GD 115

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
           I +  EPK+DG  +++ Y  G    AA RGDG +GE+++  +R I ++P  LS    P +
Sbjct: 116 IQYCAEPKLDGIAVSLIYRDGLLERAATRGDGTTGEEITTNVRTIKSVPLRLSGKGYPAL 175

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +EVRGE ++ K  F A+N + +A G K + NPRNAA+G LR+L+      R L F+ + +
Sbjct: 176 LEVRGEAFMPKAGFEAMNAKAMAAGEKTFVNPRNAAAGSLRQLDSRITANRPLAFYAYAV 235

Query: 244 GKTSEI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G    I    A      L ++   G PV+  V  A      + Y+  +   R  LPY+ID
Sbjct: 236 GVVEGIDTAMADSHSGQLAQLAQWGLPVSPIVETAAGEAAALDYFRRIGQQRPDLPYEID 295

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVD  + Q+QLG  AR+PRW I+ KF  ++  T L D++ Q+GRTG +TPVARLEP
Sbjct: 296 GVVIKVDSLAQQEQLGFVARAPRWAIACKFPAQEEMTLLKDVEFQVGRTGAVTPVARLEP 355

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG  ++NATLHN D I  L            +++GD V+++RAG+VIP++V ++   
Sbjct: 356 VFVGGVTVSNATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVSVVAER 404

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+   FPS CP+C S+V R          A  RC+GGL C AQ+ E +KHF SR A
Sbjct: 405 RPDDARDIEFPSACPVCASKVERFEGE------AVARCSGGLFCEAQRKEAIKHFASRKA 458

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +++GLG + ++     E     +  PAD+FTL   + T   ++         S  NL  
Sbjct: 459 LDVDGLGDKLVELMVDRE----LVATPADLFTLSASRLTMLPRMGT------KSAQNLVA 508

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++++ R  +L RF+++LGIR VG   A +LA+++ + +               D  +LI 
Sbjct: 509 ALDQARTTTLPRFLYALGIREVGEATAANLARHFQTLEALMAA----------DTDALIE 558

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLK----EVSPSIGRHEKNVSSEIENKKLVFTG 656
           V  VG+++A+ +  F++ P N+  ++AL       V           +  ++ +  V TG
Sbjct: 559 VDDVGEVVAKHVYYFFRQPHNLEVIQALTDTEGANVHWPAIEAVAEEAQPLKGQTWVLTG 618

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL ++ R +A+  +  LGA VS  +S+ TD ++ G+  GSKL KA  LGV +++E+  + 
Sbjct: 619 TLSQMGRSEAKAALEALGAKVSGSVSKNTDTLVAGEKAGSKLTKATDLGVPVLDEDGLVA 678

Query: 717 LLQQYN 722
           LL QYN
Sbjct: 679 LLAQYN 684


>gi|269960659|ref|ZP_06175031.1| DNA ligase [Vibrio harveyi 1DA3]
 gi|269834736|gb|EEZ88823.1| DNA ligase [Vibrio harveyi 1DA3]
          Length = 670

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/710 (35%), Positives = 389/710 (54%), Gaps = 47/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD + R    I    P+L      + P
Sbjct: 3   ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTV---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+      +VTH +P LSL+  ++  +L  F  R     +        +  EPK+
Sbjct: 60  SQRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQD--RVVGHTIKQYCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L   + P  +EVRGEV++
Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKDWPTRLEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
            K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G       A
Sbjct: 178 PKAGFDKLNENARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGATLA 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE   +++  G P+    ++ ++   + +YY ++ + R  L Y+IDG+V KVD+ ++
Sbjct: 238 NSHYERFLQIKSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKVDDIAI 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + VGD+V+++RAG+VIP+VV +I   R   A+   FP
Sbjct: 358 TLHNADEIERLQ-----------VMVGDQVVIRRAGDVIPQVVSVIKERRPETAREILFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 DACPVCGSHVERIEGE------AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S TN+ +++ K +  +L 
Sbjct: 461 EQLVDREM----VETPADLFKLSAGVLTVLERM------GPKSATNVVNALEKSKLTTLP 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ +     Q               LI V  +G I+A+ 
Sbjct: 511 RFLYSLGIREVGEATAANLAQHFKNLDAIQQATEE----------QLIEVQDIGVIVAKH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   V  LL +    P I   ++ V   +E K +V TGTL ++ R +A+E 
Sbjct: 561 ITTFFDEEKNQAVVRDLLGQGINWPDIAAPQEGVELPLEGKTVVLTGTLSQLGRSEAKEA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 621 LQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLLNLMN 670


>gi|225181787|ref|ZP_03735225.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1]
 gi|225167561|gb|EEG76374.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1]
          Length = 667

 Score =  789 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/709 (35%), Positives = 388/709 (54%), Gaps = 45/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA + +  L QEI  H+  Y+   +P I D+E+D L ++ +A+   FPDL     P
Sbjct: 1   MDRQQALETVEKLRQEIDDHNYRYHVLDEPQISDAEFDDLMQKLEAMEAQFPDLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      ++TH +P LSL    NIEDLR F+ R  R   +     + F +E
Sbjct: 58  DSPTQRVGGKPLEGFEQITHRVPMLSLSNALNIEDLRDFVRRAIRLVPE---AELEFVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  ++++YE+G+FV  A RGDG  GED++  +R + +IP  L    P  +EVRGEV
Sbjct: 115 LKVDGLAVSLQYEEGRFVRGATRGDGEVGEDITHNLRTVQSIPLRLRK--PLTLEVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ ++ FL LN+E  A G+  +ANPRNAA+G LR+L+P     R L+   +GLG +S++ 
Sbjct: 173 YMPRSSFLKLNEERQAQGQPLFANPRNAAAGSLRQLDPKVAAERNLDMVSYGLGYSSDVT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ L  ++ LG  +N  V        +VSY    +  R  LP+DIDGLV K+++ S
Sbjct: 233 PSSHYDALMTLKELGMRINPHVVVLRELEDVVSYCESWREKRYELPFDIDGLVIKINDRS 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  A+SPRW I++KF  +QA TR+  I +Q+GR G LTP+A LEPV + G ++  
Sbjct: 293 LQEELGTTAKSPRWAIAYKFPAEQAVTRVKAITVQVGRIGTLTPLAELEPVTLAGTVVKR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED ++            +D+RVGD V+V++AG++IP+VV+++ ++R    +PF  
Sbjct: 353 ASLHNEDILR-----------EKDVRVGDHVIVQKAGDIIPEVVEVVKSKRTGAEEPFEM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S   R           A RC   + C AQ +ER+ HF SR A +IEG+G   
Sbjct: 402 PKHCPACGSDATRLPGE------VALRCFNPV-CPAQVMERITHFASRSAMDIEGMGPAV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +         A  I   ADI++L  +++       ++   G+ SV NL  +I K +   L
Sbjct: 455 VLQLLD----AGLIADVADIYSLPDKKEALL----SLERMGEKSVENLLAAIEKSKKQPL 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++ LGIR VG   AR L +++ S +         +            V  VG  IAQ
Sbjct: 507 WRLLYGLGIRFVGDRTARLLVEHFNSMEKLMAASAEELEA----------VDEVGPKIAQ 556

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ EF+  P +   +E L            +     ++ K  V TGTL    R +A E +
Sbjct: 557 SVTEFFSLPESGELIERLRAAGLKLKEEEAEAKDLPLQGKTFVLTGTLPTYSRDEAAELI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  V+  +S+KTD ++ G+  GSKLEKA++L V I++EE    LL 
Sbjct: 617 EDAGGRVTGSVSKKTDYVVAGEKAGSKLEKAEKLAVTILDEEGLQSLLN 665


>gi|188533249|ref|YP_001907046.1| NAD-dependent DNA ligase LigA [Erwinia tasmaniensis Et1/99]
 gi|254781330|sp|B2VE40|DNLJ_ERWT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188028291|emb|CAO96149.1| DNA ligase [Erwinia tasmaniensis Et1/99]
          Length = 670

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/714 (34%), Positives = 399/714 (55%), Gaps = 51/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +  A P+L  +   + 
Sbjct: 1   MESLQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAAHPELLTT---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+  ++ E  R F  R+    +  DD  + F  E K
Sbjct: 58  PTQRVGAAPLSAFEQVRHEVPMLSLDNAFDEESYRAFNKRVQDRLKSSDD--LTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A +R I  IP  L   NIPE +EVRGEV+
Sbjct: 116 LDGLAVSLLYEQGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           +    F  +N++    G+K +ANPRNAA+G LR+L+P     R L FF +GLG       
Sbjct: 176 MPLAGFEKMNEQARRGGQKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ VR  ++   ++ +Y+++++ R  L +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRVRLCHSPSDVLDFYHQVEADRPALGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQITTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GDRV+++RAG+VIP+V+ ++ +     A+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVMSVVESA--EGARDVIF 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R      G++VA  RCTGGL C AQ+   LKHFVSR A +I+G+G++ 
Sbjct: 403 PTHCPVCGSDVER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     ++ PA++F L   + T   ++      G  S  N+ D++ K +  + 
Sbjct: 457 IDQLVDKE----YVKNPAELFELTAGKLTGLDRM------GPKSAQNVVDALAKAKQTTF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGI  VG   A +LA ++ + +               D  +LI VP VG ++A 
Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLEALMAA----------DIDTLITVPDVGKVVAS 556

Query: 611 AIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N   +    E         +    + + S    K +V TG+L  + R  A
Sbjct: 557 HVRNFLDEESNREIIRLLVEKAGVNWPDVVVVKAEEIDSPFAGKTVVLTGSLSILSRDDA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +E +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E++ + LL +
Sbjct: 617 KERLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMMRLLGE 670


>gi|56479083|ref|YP_160672.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
 gi|81356392|sp|Q5NYU3|DNLJ_AZOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56315126|emb|CAI09771.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
          Length = 681

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/711 (36%), Positives = 378/711 (53%), Gaps = 49/711 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +  + L +E+  HD  YY    P + D+EYD L R  DA+    P+L     P+ P  ++
Sbjct: 9   ERAAQLRRELEAHDHAYYVLDAPTVPDAEYDRLFRELDALERRHPELLV---PDSPTRRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFTLEPKID 135
           GG     L  V H++P LS+    +     +  F TR+    +       + +  E K D
Sbjct: 66  GGAPVPGLVPVRHAVPMLSIRTETDTTSGGVIAFDTRVRNALELGPHAPPVEYLGELKFD 125

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++RYE G  V AA RGDG++GEDV+  +R I  IP  L    P +IEVRGE+Y+ +
Sbjct: 126 GLAISLRYENGMLVRAATRGDGYTGEDVTHSVRTIRQIPLRLPGRPPALIEVRGEIYMRR 185

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSE----IF 250
           + F  LN      G K + NPRNAA+G +R+L+     R  L+FF +G G+  E      
Sbjct: 186 DAFERLNARQSETGGKVFVNPRNAAAGAVRQLDARIAARRPLSFFAYGFGEIGESGGWNM 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q EML  +  LG PV      A+   G++++++ + + R +LPYDIDG+VYKV+ F 
Sbjct: 246 PATQGEMLDALDALGIPVCEHRVVASGPDGLIAFHDRIAAARDSLPYDIDGVVYKVNRFD 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG   R PRW ++HK+  ++  T L+DI+IQ+GRTG LTPVARL+PV +GG  +TN
Sbjct: 306 LQRRLGFVTREPRWAVAHKYPAQEEITELVDIEIQVGRTGALTPVARLKPVFVGGVTVTN 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNE+ I+            + + +GD+V+V+RAG+VIP++V  +V  R+   +PF  
Sbjct: 366 ATLHNEEEIQR-----------KGLLIGDQVIVRRAGDVIPQIVAPVVERRNGSERPFVM 414

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S   +  +       A  RC+GGL C AQ+ + L HF  R A +IEGLG + 
Sbjct: 415 PQTCPVCGSHAEKQPDE------AVTRCSGGLFCPAQRKQALLHFAGRRAMDIEGLGDKL 468

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D           +  PAD++ L         K+ N+    D S  NL  +I K R+ +L
Sbjct: 469 VDQLVD----GGIVSTPADLYRL------GLVKLANLPRMADKSAANLLAAIEKSRHATL 518

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR+VG   AR LA+++ S                 D   L +V  VG I+A 
Sbjct: 519 ARFIFALGIRNVGEATARELARHFGSLDALMDA----------DIERLQQVADVGPIVAH 568

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I  F+    N   +E L    V    G            K  V TG L  + R  A+  
Sbjct: 569 SIAGFFAEMHNREVIEQLRAAGVHWDEGVPAVAADGPASGKTFVLTGALPTMSRDDAKAL 628

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G  VS  +S+KTD ++ G   GSKL KAQ+LGV I++E+    LL+Q
Sbjct: 629 IESHGGKVSGSVSKKTDYVVAGAEAGSKLAKAQELGVAILDEDGLRRLLEQ 679


>gi|56418811|ref|YP_146129.1| NAD-dependent DNA ligase LigA [Geobacillus kaustophilus HTA426]
 gi|81348272|sp|Q5L3B9|DNLJ_GEOKA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56378653|dbj|BAD74561.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Geobacillus
           kaustophilus HTA426]
          Length = 670

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/717 (36%), Positives = 397/717 (55%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA +  + L + +  +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KVTH +P +SL   ++  DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  +R I ++P  L    P  +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLPLRLKE--PVSLEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P     R L+ FV+GL    E+ 
Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E L  ++ LGF VN   R+      ++++ NE    R  LPY+IDG+V KVD F+
Sbjct: 231 IESHSEALDYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  
Sbjct: 291 QQRELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF+ 
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLEGE------VALRCLNP-NCPAQLRERLIHFASRAAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +R  AD++ L + Q     ++      G+ S TNL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVRDVADLYRLTKEQLIGLERM------GEKSATNLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +   +     +          + VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLERATKEEL----------MAVPEIGEKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           AI  F+  P     ++ L         +      E    S    K +V TG L  + R++
Sbjct: 553 AITAFFAQPEATELLQELRAYGVNMAYKGPKRSAEAPADSAFAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TD++I G++ GSKLEKAQQLG++I +E +FL  + +  
Sbjct: 613 AKEEIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDESRFLQEINRGK 669


>gi|312173113|emb|CBX81368.1| DNA ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 670

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/714 (34%), Positives = 404/714 (56%), Gaps = 51/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +   +P+L  S   + 
Sbjct: 1   MESLQDKITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+  ++ E    F  R+    +  DD  I F  E K
Sbjct: 58  PTQRVGAAPLSAFGQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YEKG+ V AA RGDG +GED++A +R I  IP  LS + IPE +EVRGEV+
Sbjct: 116 LDGLAVSLLYEKGQLVRAATRGDGTTGEDITANVRTIRAIPLRLSGDSIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           +    F  +N +  + G+K +ANPRNAA+G LR+L+P     R L FF +GLG       
Sbjct: 176 MPLAGFEQMNQQARSCGQKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGLGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ VR +++   ++ +Y+++++ R TL +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRVRLSHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQITTVRDVEFQVGRTGAMTPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GDRV+++RAG+VIP+V+ ++  E   DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVV--ETGDDAREIAF 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S + R      G++VA  RCTGGL C AQ+   LKHFVSR A +I+G+G++ 
Sbjct: 403 PTHCPICGSDIER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     ++ PA++F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 457 IDQLVDKE----YVKNPAELFELTAGKLTGLDRM------GPKSAQNVVNALAKAKQTTF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGI  VG   A +LA ++ + +          A    D  +L+ V  VG ++A 
Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLE----------ALMTADLDALMAVQDVGKVVAS 556

Query: 611 AIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N   +    +         +      + S    K +V TG+L  + R +A
Sbjct: 557 HVRNFLDEESNREIIRLLVDKAGVNWPQVVVVKAGEIDSPFAGKTVVLTGSLSILSRDEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E++ + LL +
Sbjct: 617 KDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMIRLLGE 670


>gi|261822799|ref|YP_003260905.1| NAD-dependent DNA ligase LigA [Pectobacterium wasabiae WPP163]
 gi|261606812|gb|ACX89298.1| DNA ligase, NAD-dependent [Pectobacterium wasabiae WPP163]
          Length = 681

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/708 (36%), Positives = 395/708 (55%), Gaps = 51/708 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L + + +H+  Y+    P I DSEYD L +   A+    P+L  S   + P  ++G
Sbjct: 14  RVAELRRVLRHHEYKYHVEDAPEIPDSEYDKLMQELKALEADHPELVTS---DSPTQRVG 70

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                +  +V H +P LSL+ +++ E    F  RI    +  DD  + F  E K+DG  +
Sbjct: 71  AAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFCCELKLDGLAV 128

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE G  V AA RGDG +GE++++ IR +  IP  L   NIP  +EVRGEV++    F
Sbjct: 129 SLLYEDGVLVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVFMKHGGF 188

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYE 256
             LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G           +E
Sbjct: 189 EKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPASHWE 248

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L + +  G PV++ ++       ++ +Y +++  RS L +DIDG+V KVD  +LQ++LG
Sbjct: 249 RLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSELGFDIDGVVVKVDSLALQERLG 308

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN 
Sbjct: 309 FVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHNA 368

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            +++GDRV+V+RAG+VIP++V I+ +ER    QP  FP  CP+
Sbjct: 369 DEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPVACPV 417

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R          A  RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D   +
Sbjct: 418 CGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 471

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     ++ PAD+F L     T   ++      G  S  N+ +++ K ++ +L RF+++
Sbjct: 472 KE----YVKTPADLFRLSAGSMTGLDRM------GPKSAMNVVNALEKAKSTTLARFLYA 521

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +LA ++ S +               D  +L+ VP VG I+A  +  F 
Sbjct: 522 LGIRDVGESTAANLAAHFGSLEALFAA----------DEDALLAVPDVGKIVAAHVRHFL 571

Query: 617 QNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +   N   +  L      +I   E      + + S    K +V TG+L  + R +A++ +
Sbjct: 572 EEEHNQTVIRELTDPAGINIHWPEVQVVNAEEIDSPFAGKTVVLTGSLSILSRDEAKDRL 631

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 632 TALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 679


>gi|15603581|ref|NP_246655.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|81636517|sp|Q9CKA9|DNLJ_PASMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|12722128|gb|AAK03800.1| Lig [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 673

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/706 (35%), Positives = 395/706 (55%), Gaps = 45/706 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  + E+  L Q + YH+  Y+    P I D+EYD L  R   +   +P       P+ P
Sbjct: 3   DSIKLEIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKTLEQQYPQWF---SPDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G +   +  +V H +P LSL+  ++ E+L  F+ RI           + F  EPK+
Sbjct: 60  TQRVGAKPLSAFAQVQHEMPMLSLDNAFSDEELHAFVKRIQDRL-VFSPKLLEFCCEPKL 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  ++I Y  GK   AA RGDG +GED++  IR +  IP ++L  N P  +EVRGEV++
Sbjct: 119 DGLAVSILYVDGKLTQAATRGDGSTGEDITLNIRTVRNIPLQLLMENPPTRLEVRGEVFM 178

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FA 251
           S+  F  LN++ +A G K +ANPRNAA+G LR+L+P   + R L    + +G    I   
Sbjct: 179 SQAGFEVLNEKALARGEKTFANPRNAAAGSLRQLDPRITSQRPLLLNAYSIGVAEGIDLP 238

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +E LQ ++ +G PVNN ++       ++++Y  +   RSTL YDIDG V KV++ +L
Sbjct: 239 DTHFERLQWLKSIGIPVNNEIQLCEGTENVLNFYRAIMQKRSTLGYDIDGTVIKVNDIAL 298

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +++PRW I++KF  ++  T L  ++ Q+GRTG +TPVA+L+PV + G  ++NA
Sbjct: 299 QEELGFISKAPRWAIAYKFPAQEELTVLNAVEFQVGRTGAITPVAKLQPVFVAGVTVSNA 358

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           D+ +GD V+++RAG+VIP+++ ++  +R  +A+   FP
Sbjct: 359 TLHNGDEIARL-----------DVAIGDTVIIRRAGDVIPQIIGVLHEKRPANAEKIVFP 407

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + +
Sbjct: 408 TECPVCGSVIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGAKLI 461

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     I  PAD+F L         ++      G  S  N  DS+ K +  +L 
Sbjct: 462 EQLVDREQ----IHTPADLFKLDLNTLARLERM------GLKSAQNALDSLQKAKKTTLA 511

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIR VG   A +LA ++ + +   +               L  V  VG+++A  
Sbjct: 512 RFIFALGIREVGEATALNLANHFKTLEALKEAT----------LEQLQEVQDVGEVVANR 561

Query: 612 IVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I  F++ P N+  VE L+ + +       +    +  + K +V TGTL ++ R +A+  +
Sbjct: 562 IFVFWREPHNVAVVEDLIAQGIHWETVEVKDVGDNPFKEKTVVLTGTLTQMGRTEAKALL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            QLGA VS  +S KTD+++ GD+ GSKL KA +LGVK+++E  FL 
Sbjct: 622 QQLGAKVSGSVSAKTDLVVAGDSAGSKLTKANELGVKVIDENTFLA 667


>gi|187477571|ref|YP_785595.1| DNA ligase [Bordetella avium 197N]
 gi|123752160|sp|Q2KUU5|DNLJ_BORA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115422157|emb|CAJ48681.1| DNA ligase [Bordetella avium 197N]
          Length = 695

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/732 (36%), Positives = 396/732 (54%), Gaps = 66/732 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            + AR++ + L  EI+ H+  YY Y +P I D++YDAL R   A+    P+L     P+ 
Sbjct: 5   EQAAREQAARLRAEIAQHNIRYYVYDEPSITDADYDALMRELMALEAQHPELV---TPDS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK----DDNSIFFT 129
           P  ++G         V H++P LSL   +  ED+  F  R+    ++           + 
Sbjct: 62  PTQRVGAAPLAEFGSVRHAVPMLSLGNGFEDEDVLAFDKRVSDTLREAGLLGPAEQAHYF 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E K+DG  I++RYE G+ V AA RGDG  GEDV+A IR I  IP  L    P ++EVRG
Sbjct: 122 CELKLDGLAISLRYENGELVQAATRGDGQEGEDVTANIRTIRAIPLQLRAGAPAVLEVRG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EV +++ DF  LN +  A G K + NPRNAA+G LR+L+P     R L FF +  G+   
Sbjct: 182 EVLMNRADFEKLNQKQAARGEKIFVNPRNAAAGSLRQLDPRVTAQRPLRFFAYSWGEVQG 241

Query: 249 I-------------------FAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEM 288
           +                          ML  +  LG PVN     +A    G++++Y  +
Sbjct: 242 LSRDDAPAFDEASPGLVSTLPRDTHGGMLDWLAGLGLPVNVRFNHKAQGAEGLLAFYRRI 301

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
            + R +LPYDIDGLVYKVD  + Q+ LG  AR+PRW ++HKF  ++A+T LLDI++Q+GR
Sbjct: 302 GAERGSLPYDIDGLVYKVDALAAQRVLGYVARAPRWALAHKFPAEEATTELLDIEVQVGR 361

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVARL+PV +GG  +TNATLHNED I+            +D+R+GDRV+V+RAG+
Sbjct: 362 TGAITPVARLKPVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDRVIVRRAGD 410

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+VV  ++ +R  +   F  P+ CPIC S + R ++       A  RCTGGL C AQ+
Sbjct: 411 VIPEVVGPVLEKRSGELPQFVMPTHCPICGSAIERLVDE------AIARCTGGLFCPAQR 464

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
            + L H   R A +IEGLG++ ++    +     S++  AD+F L   +  +  ++    
Sbjct: 465 KQTLLHAAGRKALDIEGLGEKLVEQLVDN----GSLKTLADVFRLNAFELAALDRM---- 516

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G  S  NL  +I++ R  SL R +F+LGIRHVG   AR +A+++ +            
Sbjct: 517 --GKKSADNLVAAIDQARRPSLGRLLFALGIRHVGETTARDVARHFGNIDAIMDA----- 569

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
                D  +L+ VP VG ++A +I  F+Q   N   +  L K+         +  S ++ 
Sbjct: 570 -----DEAALLAVPDVGPVVAGSIHRFFQEAHNREVIRELEKQ-GVHPQAEAQLQSGDLA 623

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K  V TGT+    R +A  ++   G  VS  +S+KT  ++ G+  GSKL KA++LGV I
Sbjct: 624 GKTFVLTGTMPTWSRDEATRHILAAGGKVSGSVSKKTAYVVAGEEAGSKLVKARELGVTI 683

Query: 709 MNEEQFLFLLQQ 720
           ++E+    LL Q
Sbjct: 684 LDEDGLKALLSQ 695


>gi|91225892|ref|ZP_01260861.1| DNA ligase [Vibrio alginolyticus 12G01]
 gi|91189542|gb|EAS75818.1| DNA ligase [Vibrio alginolyticus 12G01]
          Length = 670

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/710 (35%), Positives = 387/710 (54%), Gaps = 47/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL      + P
Sbjct: 3   ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITV---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+   +  +VTH +P LSL+  ++  +L  F  R              +  EPK+
Sbjct: 60  SQRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSLSVKE--YCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  N  P  +EVRGEV++
Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
            K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G       A
Sbjct: 178 PKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGAELA 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE   +++  G P+    ++  +   + +YY ++   R  LPY+IDG+V K+D+ ++
Sbjct: 238 ASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDDIAV 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            +++GD V+++RAG+VIP+VV +I   R   A+   FP
Sbjct: 358 TLHNADEIERLQ-----------VKIGDHVVIRRAGDVIPQVVSVIKERRPETARDIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RC GGL C AQ+ + LKHFVSR A +++GLG + +
Sbjct: 407 TQCPVCGSHVERIEGE------AVTRCMGGLVCQAQRKQALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     ++ PAD+F L     T   ++      G  S  N+ +++ K +  +L 
Sbjct: 461 EQLVDREM----VKTPADLFKLSAGILTVLDRM------GPKSAQNIVNALEKSKETTLP 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA ++ +                     LI V  +G ++AQ 
Sbjct: 511 RFLYSLGIREVGEATAANLAMHFKTLGAIQNATEE----------QLIEVQDIGAVVAQH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   V+ LL++    P I   E+     +E K +V TGTL ++ R +A+E 
Sbjct: 561 ITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTEAKEA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 621 LQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELMN 670


>gi|78043193|ref|YP_359946.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123743192|sp|Q3AD38|DNLJ_CARHZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77995308|gb|ABB14207.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 664

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/708 (35%), Positives = 388/708 (54%), Gaps = 47/708 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E  +K +  L   + YH+  YY   +P I D+EYD + R   ++   +P+      P
Sbjct: 1   MDKEAVKKRIEELRALLHYHNYRYYVLDQPEISDAEYDRMLRELISLEQQYPEFI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE+     +V H  P  SL+  +  EDL++F  R+           + + +E
Sbjct: 58  DSPSQRVGGEVAKEFREVAHLKPMYSLDNAFGPEDLKEFDRRVRSLLP---GQEVEYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V  A RG+G +GED++A ++ I  IP  L   IP ++EVRGE 
Sbjct: 115 LKIDGLAISLVYENGVLVRGATRGNGTTGEDITANVKTIKAIPLKLRNPIP-LLEVRGEA 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN++    G   +ANPRNAA+G LR+L+P     R L+ F++ +G+     
Sbjct: 174 YMPKESFARLNEQREERGEPLFANPRNAAAGSLRQLDPKVTAERDLSAFMYAIGEVQGYE 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E+++ +  LGF VN      N    +++Y       R +LPY IDGLV KV+  +
Sbjct: 234 PKTQAELMEWLSELGFKVNPYREVFNNIDDVINYCQSWHEKRFSLPYVIDGLVIKVNSLA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  A+SPRW I++KF  + A TRL DI +++GRTG+LTP A  EPV++ G  +T 
Sbjct: 294 QQEALGFTAKSPRWAIAYKFPAEIAETRLKDIIVRVGRTGVLTPTAIFEPVSLAGTTVTR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNEDYI+            +DIR+GD + V++AGE+IP+VV+++  +R    + F  
Sbjct: 354 ASLHNEDYIR-----------EKDIRIGDIIRVQKAGEIIPEVVEVVKEKRTGAEKEFVM 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+CQ + VR          AA RCT   +C AQ  E + HF SR A NIEGLG   
Sbjct: 403 PDTCPVCQGKAVRLPGE------AAWRCTNA-SCPAQLKEGIVHFASRGAMNIEGLGPAV 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +   +    A  I   AD++ L      S  ++  +   G  S  NL ++I K +  SL
Sbjct: 456 AELLLE----AGLIHNYADLYYL------SAEEVARLPRMGKKSAENLINAIEKSKQNSL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER I+ LGIR VG + AR LA ++       +E++ +IA   +    ++ +P VG  +A 
Sbjct: 506 ERLIYGLGIRLVGEKAARDLAVHF-------KELDKLIAAGEE---EIMAIPSVGPKMAA 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I  F+    N+  +E L K    +     +   + +E    V TGTL    R +A++ +
Sbjct: 556 SIKAFFAQKENLELIEKL-KAAGVNTKYLAEVRDNRLEGLTFVLTGTLSSFTRKEAEQLI 614

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             LG  VS+ +S+KT  ++VG++PGSKL KA++LG+ I+ EE+F  ++
Sbjct: 615 LSLGGKVSSSVSKKTSYVVVGEDPGSKLTKAKELGIPILTEEEFRQMV 662


>gi|170692136|ref|ZP_02883299.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
 gi|170142566|gb|EDT10731.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
          Length = 693

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/711 (36%), Positives = 391/711 (54%), Gaps = 49/711 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
                 L  E+   +  YY   +P + D+EYD L +  ++I    PDL     P+ P  +
Sbjct: 20  AARAEWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAEHPDLIV---PDSPTQR 76

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTLEPKI 134
           +GGE       V H  P LSL   +  ED+  F  R+              + +  E K 
Sbjct: 77  VGGEAASGFEPVVHDQPMLSLNNGFADEDIIAFDKRVGDALGNNAKEPPVPVDYATELKF 136

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  I++RY  G FV AA RGDG +GE+V+  IR + +IP  L    +P I++VRGEV +
Sbjct: 137 DGLAISLRYVDGVFVQAATRGDGATGENVTENIRTVRSIPLRLKGKRVPHILDVRGEVLM 196

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FA 251
            K DF  LN+   A G K +ANPRNAA+G LR+L+P     R L+FF +G+G    I   
Sbjct: 197 FKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGIEMP 256

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E+L   + LG PVN+         G++++++ +   R  LPYDIDG+VYKV+    
Sbjct: 257 ATHSELLDWYKELGLPVNSERAVVKGAEGLLAFFHAVGEKRDKLPYDIDGVVYKVNRRDE 316

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNA
Sbjct: 317 QEALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 376

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA+ F  P
Sbjct: 377 TLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALIDRRPDDAREFVMP 425

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +
Sbjct: 426 THCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKII 479

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D   +       +R PAD+F L        + +  +  F D S  NL DS+ K R+ +L 
Sbjct: 480 DQLVEQN----LVRTPADLFNL------GFSTLAQLDRFADKSAQNLLDSLEKARHTTLS 529

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIRHVG   A+ LAK++ S     +              +L+ V  VG ++A++
Sbjct: 530 RFIYALGIRHVGESTAKDLAKHFGSLDPIMEA----------SVEALLEVNDVGPVVAES 579

Query: 612 IVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           I +F+    N   +E L        P      +     +  K +V TGTL  + R +A+E
Sbjct: 580 IHQFFAEEHNRTVIEQLRAHGKVTWPEGPPAPRAPQGVLAGKTIVLTGTLPNLAREEAKE 639

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 640 MLEAAGAKVAGSVSKKTDYVVAGAEAGSKLVKAEELGIPVLDEDGMRKLLE 690


>gi|163856016|ref|YP_001630314.1| DNA ligase [Bordetella petrii DSM 12804]
 gi|254781264|sp|A9II69|DNLJ_BORPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163259744|emb|CAP42045.1| DNA ligase [Bordetella petrii]
          Length = 697

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/730 (34%), Positives = 387/730 (53%), Gaps = 68/730 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QA + +++L  EI  H+  YY +  P + D+EYDAL R    +    P+L     P  P 
Sbjct: 7   QAAQRVAALRNEIEQHNVRYYVHDDPSVSDAEYDALMRELIQLETDHPELV---TPESPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLE 131
            ++G     +   V H++P LSL   ++ ++++ F  R+    +       D    +  E
Sbjct: 64  QRVGAAPLAAFGSVRHAVPMLSLGNAFDPDEVQAFDRRVGDTLRGAGLLRVDQQPEYFCE 123

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I++RYE G  V AA RGDG +GEDV+A +R I  +P  L    P ++EVRGEV
Sbjct: 124 LKLDGLAISLRYEDGVLVQAATRGDGQTGEDVTANVRTIRAVPLRLKGAAPRVLEVRGEV 183

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            +++ +F  LN    A   K + NPRNAA+G LR+L+P     R L FF +  G+   + 
Sbjct: 184 LMNRAEFDRLNRSQAARDEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLP 243

Query: 251 ---------------------AKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEM 288
                                      ML  +  LG PVN    R+A    G++++Y ++
Sbjct: 244 GRQTALFDEPAPGAREESTLPRDTHGAMLDWLAELGLPVNTRHNRRAVGAEGLLAFYEQV 303

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
              R  LPYDIDG+VYKV+    QK LG  AR+PR+ ++HKF  ++A+TRLLDI++Q+GR
Sbjct: 304 GRERPGLPYDIDGVVYKVNSLPAQKVLGFVARAPRFALAHKFPAEEATTRLLDIEVQVGR 363

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVARL+PV +GG  +TNATLHNED ++            +D+R+GD V V+RAG+
Sbjct: 364 TGAITPVARLQPVFVGGVTVTNATLHNEDEVRR-----------KDVRIGDTVTVRRAGD 412

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+VV  +  +R  DA+ F  P  CP+C S + R  +       A  RCTGGL C+AQ+
Sbjct: 413 VIPEVVGPVPGKRPADAREFVMPVSCPVCGSAIERPEDE------AIARCTGGLFCAAQR 466

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
            + L H   R A +I+GLG++ +D    S      ++  AD+++L   +  +  ++    
Sbjct: 467 KQTLLHAAGRKALDIDGLGEKLIDQLVDSGR----VKSLADLYSLNAFELAALERM---- 518

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G  S  NL  +I++ R  SL R +F+LGIRHVG   AR +A+++ S +         +
Sbjct: 519 --GKKSADNLVAAIDRARTPSLGRLLFALGIRHVGETTARDVARHFGSIETIMDADEEAL 576

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
           A            P VG ++A +I  F+  P N   ++ LLK              + + 
Sbjct: 577 AGA----------PDVGPVVAGSIRRFFAEPHNREIID-LLKAQGVHPVPEAGPQGNTLA 625

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K  V TGT+    R +A  ++   G  VS  +S+KT  ++ G+  GSKL KAQ+LGV +
Sbjct: 626 GKTFVLTGTMPNWTRDEATRHILAAGGKVSGSVSKKTAYVVAGEEAGSKLAKAQELGVTV 685

Query: 709 MNEEQFLFLL 718
           ++E+    LL
Sbjct: 686 LDEDGLKALL 695


>gi|292488952|ref|YP_003531839.1| DNA ligase [Erwinia amylovora CFBP1430]
 gi|292900089|ref|YP_003539458.1| DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291199937|emb|CBJ47061.1| DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291554386|emb|CBA21816.1| DNA ligase [Erwinia amylovora CFBP1430]
          Length = 670

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/714 (34%), Positives = 403/714 (56%), Gaps = 51/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +   +P+L  S   + 
Sbjct: 1   MESLQDKITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+  ++ E    F  R+    +  DD  I F  E K
Sbjct: 58  PTQRVGAAPLSAFGQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YEKG+ V AA RGDG +GED++A +R I  IP  LS + IPE +EVRGEV+
Sbjct: 116 LDGLAVSLLYEKGQLVRAATRGDGTTGEDITANVRTIRAIPLRLSGDSIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           +    F  +N +  + G+K +ANPRNAA+G LR+L+P     R L FF +GLG       
Sbjct: 176 MPLAGFEQMNQQARSCGQKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGLGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ VR +++   ++ +Y+++++ R TL +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRVRLSHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQITTVRDVEFQVGRTGAMTPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GDRV+++RAG+VIP+V+ ++  E   DA   +F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVV--ETGDDALEIAF 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S + R      G++VA  RCTGGL C AQ+   LKHFVSR A +I+G+G++ 
Sbjct: 403 PTHCPICGSDIER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     ++ PA++F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 457 IDQLVDKE----YVKNPAELFELTAGKLTGLDRM------GPKSAQNVVNALAKAKQTTF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGI  VG   A +LA ++ + +          A    D  +L+ V  VG ++A 
Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLE----------ALMTADLDALMAVQDVGKVVAS 556

Query: 611 AIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N   +    +         +      + S    K +V TG+L  + R +A
Sbjct: 557 HVRNFLDEESNREIIRLLVDKAGVNWPQVVVVKAGEIDSPFAGKTVVLTGSLSILSRDEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E++ + LL +
Sbjct: 617 KDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMIRLLGE 670


>gi|37679166|ref|NP_933775.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus YJ016]
 gi|81758078|sp|Q7MMT5|DNLJ_VIBVY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|37197908|dbj|BAC93746.1| NAD-dependent DNA ligase [Vibrio vulnificus YJ016]
          Length = 669

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/709 (35%), Positives = 389/709 (54%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  ++ L  L+Q++ YH   YY    P I D+EYD + R   AI    P+       + P
Sbjct: 3   ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWI---SVDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG    S  +VTH IP LSL+  ++ E+L  F+ R          +   F  EPK+
Sbjct: 60  SQRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHID--AFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I ++P  L     P  IEVRGEV++
Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251
            K  F  LND     G K + NPRNAA+G LR+L+     TR L F+ + +G    I  +
Sbjct: 178 PKVGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y+   +++  G P+    +  N    + ++Y ++ + R  LPY+IDG+V K+D+  +
Sbjct: 238 SSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIVI 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QEKLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + VGD V+++RAG+VIP++V ++   R  D  P  FP
Sbjct: 358 TLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKERRKGDENPIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 TSCPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+FTL     T   ++      G  S  N+ +++N  +  +L 
Sbjct: 461 EQLVDKEM----VETPADLFTLSAGVLTVLERM------GPKSAQNIVNALNVAKETTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ + +      +            LI VP +G+++A+ 
Sbjct: 511 RFLYSLGIREVGEATAANLARHFKTLEAIQTATHE----------QLIEVPDIGEVVARH 560

Query: 612 IVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   V+A      V P +      +   +  K +V TGTL ++ R  A+  
Sbjct: 561 ITAFFAEEKNQRVVQALIEQGIVWPPVEELGSEIPQPLAGKVVVLTGTLTQLSRGDAKAA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +LGA V+  +S+KTDI+  G+  GSKL KAQ+LGV+I  E+  L LL
Sbjct: 621 LERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669


>gi|212212963|ref|YP_002303899.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
 gi|254781302|sp|B6J1C6|DNLJ_COXB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212011373|gb|ACJ18754.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
          Length = 677

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/713 (34%), Positives = 386/713 (54%), Gaps = 46/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L QEI+ H+  YY  S+P I DS YD L      +   +P+      P+ 
Sbjct: 7   PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETI---TPSS 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +  +   D    +  EPK
Sbjct: 64  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKL--DKPFEYVCEPK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 122 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 181

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G      F
Sbjct: 182 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 242 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++N
Sbjct: 302 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 362 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 411 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFASRRALDIEGLGDKL 464

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++   T+          G+ S  NL  +I K +  +L
Sbjct: 465 VELFIQEK----LIKDITGIYQLKKSAITAL------PRMGEKSAENLLTAIEKSKKTTL 514

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   AR+LA+++       +              +L  +  +G + A+
Sbjct: 515 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVAAE 564

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L   +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 565 NIHAFFHQKHNAELINKL-IHLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+    
Sbjct: 624 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLKSKGV 676


>gi|297528690|ref|YP_003669965.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
 gi|297251942|gb|ADI25388.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
          Length = 670

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/717 (36%), Positives = 395/717 (55%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA +  + L + +  +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KVTH IP +SL   ++  DLR F  RI      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVTHRIPMMSLANAFDEGDLRDFDRRIR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L    P  +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKE--PVSLEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P     R L+ FV+GL    E+ 
Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E L  ++ LGF VN   R+      ++++ NE    R  LPY+IDG+V KVD F+
Sbjct: 231 IESHSEALDYLQALGFKVNPERRRCANIDEVIAFINEWHEKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  
Sbjct: 291 QQRELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF  
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNP-KCPAQLRERLIHFASRAAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +   AD++ L + Q     ++      G+ S TNL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVHDVADLYRLTKEQLIGLERM------GEKSATNLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +   +     +          + VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATKEEL----------MAVPEIGEKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+ F+  P     +  L         +      E    S    K +V TG L  + R++
Sbjct: 553 SIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TDI+I G++ GSKLEKAQQLG++I +E +FL  + +  
Sbjct: 613 AKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFLQEISRGK 669


>gi|165923886|ref|ZP_02219718.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334]
 gi|165916671|gb|EDR35275.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334]
          Length = 670

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/709 (34%), Positives = 387/709 (54%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L QEI+ H+  YY  S+P I DS YD L      +   +P+      P+ 
Sbjct: 4   PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETI---TPSS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +  +   D    +  EPK
Sbjct: 61  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKL--DKPFEYVCEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 119 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G      F
Sbjct: 179 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 239 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++N
Sbjct: 299 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 359 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 408 PSRCPVCHAEVIKPEGE------AVARCMGGLYCRAQLRESIKHFASRRALDIEGLGDKL 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++   T+          G+ S  NL  +I K +  +L
Sbjct: 462 VELFIQEK----LIKDITGIYQLKKSAITAL------PRMGEKSAENLLTAIEKSKKTTL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   AR+LA+++       +              +L  +  +G ++A+
Sbjct: 512 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L   +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 562 NIHAFFHQKHNAELINKL-IHLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 621 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669


>gi|317401960|gb|EFV82562.1| DNA ligase [Achromobacter xylosoxidans C54]
          Length = 699

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/729 (35%), Positives = 389/729 (53%), Gaps = 68/729 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A +  + L  EI  H+  YY Y  P I D+EYD L R    +  A P+L     P  P  
Sbjct: 9   AAETAARLRAEIEQHNVRYYVYDDPSISDAEYDRLMRELQDLEAAHPELV---TPESPTQ 65

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSIFFTLEP 132
           ++G     +   V H++P LSL   ++ ED+  F  R+    +            +  E 
Sbjct: 66  RVGAAPVSAFGSVRHAVPMLSLGNAFDEEDVVAFDRRVTDTLRGAGLLGPAQQAEYFCEL 125

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  I++RYE G+ V AA RGDG +GEDV++ IR I  IP  LS   P+++EVRGEV 
Sbjct: 126 KLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLSGPAPKVLEVRGEVL 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250
           +++ DF  LN        K + NPRNAA+G LR+L+P     R L FF +G G+   +  
Sbjct: 186 MNRADFEKLNAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVRGLPG 245

Query: 251 --------------------AKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMK 289
                                K    ML  +  LG PVN     +A    G++++Y ++ 
Sbjct: 246 TQSGLFDEASAGAADASTLPEKSHGAMLDWLASLGLPVNVKHNHRATGAEGLMAFYAKVG 305

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
           ++R  LPYDIDG+VYKVD    QK LG  AR+PR+ ++HKF  ++A+T LLDI++Q+GRT
Sbjct: 306 ALRPELPYDIDGVVYKVDSLPAQKLLGFVARAPRFALAHKFPAEEATTTLLDIEVQVGRT 365

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVARL+PV +GG  +TNATLHNED I+            +D+R+GD V+V+RAG+V
Sbjct: 366 GAITPVARLKPVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDTVIVRRAGDV 414

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IP+VV  ++ +R  DA+ F  P  CP+C S + R  +          RCTGGL C+AQ+ 
Sbjct: 415 IPEVVGAVLEKRPADAREFVMPKACPVCGSAIERLEDETIA------RCTGGLFCAAQRK 468

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
           + L H  SR A +IEGLG++ ++    S      ++  AD+F+L+  +     ++     
Sbjct: 469 QTLWHAASRKALDIEGLGEKLVEQLVDSGR----VKSLADLFSLRPLELVGLDRMGQ--- 521

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
               S  NL ++I+K R  +L R +F+LGIRHVG   AR +A+++ S +       + ++
Sbjct: 522 ---KSADNLVEAIDKARAPALGRLLFALGIRHVGETTARDVARHFGSIEAIMDADEDALS 578

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
                      VP VG ++A +I  F+    N   +  L  +   ++        + +  
Sbjct: 579 ----------SVPDVGPVVAGSIRRFFAEQHNRDVIGQLKAQGVHAVAEA-VPQDTTLAG 627

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K  V TGTL    R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LGV ++
Sbjct: 628 KTFVLTGTLPNWTREEASMRIQAAGGKVSGSVSKKTAYLVAGEDAGSKLTKAQELGVTVL 687

Query: 710 NEEQFLFLL 718
           +E+    LL
Sbjct: 688 DEDGLKELL 696


>gi|212218835|ref|YP_002305622.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
 gi|254781301|sp|B6J878|DNLJ_COXB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212013097|gb|ACJ20477.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
          Length = 673

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/709 (34%), Positives = 387/709 (54%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L +EI+ H+  YY  S+P I DS YD L      +   +P+      P+ 
Sbjct: 7   PAKIQKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETI---TPSS 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +  +   D    +  EPK
Sbjct: 64  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKL--DKPFEYVCEPK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 122 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 181

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G      F
Sbjct: 182 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 242 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++N
Sbjct: 302 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 362 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 411 PSRCPVCHAEVIKPEGE------AVARCMGGLYCRAQLRESIKHFASRRALDIEGLGDKL 464

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++   T+          G+ S  NL  +I K +  +L
Sbjct: 465 VELFIQEK----LIKDITGIYQLKKSAITAL------PRMGEKSAENLLTAIEKSKKTTL 514

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   AR+LA+++       +              +L  +  +G ++A+
Sbjct: 515 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 564

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L   +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 565 NIHAFFHQKHNAELINKL-IHLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 624 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672


>gi|91788454|ref|YP_549406.1| DNA ligase [Polaromonas sp. JS666]
 gi|123164833|sp|Q12AD4|DNLJ_POLSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91697679|gb|ABE44508.1| DNA ligase, NAD-dependent [Polaromonas sp. JS666]
          Length = 706

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/745 (35%), Positives = 392/745 (52%), Gaps = 62/745 (8%)

Query: 1   MKKRQLIPIEALSIEQA--RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           M  + L      S + A   + +++L  E+  H   YY   +P I DSEYD L +    +
Sbjct: 1   MATKDLFAQPEPSRQPASPAERMAALRAELHAHAHRYYVLDEPTIPDSEYDRLFKELQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK--FITRIYR 116
             A+P+L     P+ P  ++GG+       V H +P LS+    + E      F TR+ +
Sbjct: 61  EAAYPELL---TPDSPTQRVGGKPLDQFASVRHKVPMLSIRTETDTEATGAQNFDTRVRK 117

Query: 117 FWQKKDDNS-IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
                + N  + +  E K DG  +++RYE G  V AA RGDG  GE+V+  IR I  IP 
Sbjct: 118 ELGLTESNPPVEYVAELKFDGLAMSLRYEHGVLVQAATRGDGEVGEEVTQNIRTIRQIPL 177

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV------GRKPYANPRNAASGILRRLNP 229
            L  + P ++EVRGEVY+ + DF ALND+          G K + NPRNAA+G +R+L+P
Sbjct: 178 KLPSDAPPVLEVRGEVYMRRADFEALNDKQREKIAAGAKGEKTFVNPRNAAAGAVRQLDP 237

Query: 230 TDIT-RYLNFFVHGLGK---------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFH 279
                R L+FF +G+G+             +     E+LQ ++  GFPV    + A+   
Sbjct: 238 AIAAQRPLSFFAYGVGEVVLEAEQANPKNPWVATHMELLQALKSWGFPVAAQTKIAHGAS 297

Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL 339
            +++++  M   R +LPYDIDG+VYKV+  +LQKQ+G  +R PRW ++HK+  ++  T +
Sbjct: 298 ELIAFHQAMGQQRDSLPYDIDGVVYKVNSLALQKQMGFVSREPRWAVAHKYPAQEQLTTV 357

Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGD 399
           L I++Q+GRTG LTPVA+L PV +GG  +TNATLHNED  +            +D+RVGD
Sbjct: 358 LGIEVQVGRTGKLTPVAKLAPVFVGGVTVTNATLHNEDEARR-----------KDVRVGD 406

Query: 400 RVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459
            V+V+RAG+VIP+VV ++ ++R P A  F+ P  CP+C S  VR+         A +RCT
Sbjct: 407 TVIVRRAGDVIPEVVSVLPDKRLPGAPMFTMPRQCPVCGSDAVREEGE------ADYRCT 460

Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
           GGL C AQ+ E + H+  R A  IEGLG + ++    +      IR   D++ L      
Sbjct: 461 GGLFCGAQRKEAILHYAHRRAVEIEGLGDKLVEQLVDAN----VIRTLPDLYKL------ 510

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
             T + ++    + S  NL  ++ K +  +L RF+F LGIRHVG   A+ LA+++ +   
Sbjct: 511 GLTALASLDRMAEKSANNLLKALEKSKQTTLPRFLFGLGIRHVGEATAKELARHFGNLDA 570

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGR 638
                             L+ V  VG I+AQ+I  F+  P N   VE L    V    G 
Sbjct: 571 IMDATQE----------QLLAVSDVGSIVAQSIRTFFDQPHNREVVEQLRACGVHWEEGE 620

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                   +  K  V TGTL  + R +A++ V   G  V+  +S+KTD ++ G   GSKL
Sbjct: 621 PAAVAPKPLSGKTFVITGTLPTLSRDEAKDKVEAAGGKVAGSVSKKTDYVVAGTEAGSKL 680

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNT 723
            KAQ+LG+ +++E   + LL     
Sbjct: 681 VKAQELGIAVIDEAALMRLLASAEA 705


>gi|121604718|ref|YP_982047.1| DNA ligase [Polaromonas naphthalenivorans CJ2]
 gi|166216226|sp|A1VN98|DNLJ_POLNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120593687|gb|ABM37126.1| DNA ligase, NAD-dependent [Polaromonas naphthalenivorans CJ2]
          Length = 707

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/726 (35%), Positives = 390/726 (53%), Gaps = 56/726 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
             +      + +++L  E+  H   YY   +P I D+EYD L +   A+  A P+L    
Sbjct: 13  APMPPASVIERIAALRAELDLHAHRYYVLDEPSIPDAEYDRLFKELQALEAAHPELL--- 69

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK--FITRIYRFWQKKD-DNSI 126
            P+ P  ++GG+       V H IP LS+    + E      F TR+ +    K+ D  +
Sbjct: 70  TPDSPTQRVGGKPLGQFASVRHRIPMLSIRTETDTEATGARNFDTRVRKELGLKESDPPV 129

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +  E K DG  +++RYE G  V AA RGDG  GEDV+  IR I  IP  L  + P ++E
Sbjct: 130 EYVAELKFDGLAMSLRYENGVLVQAATRGDGEVGEDVTQNIRTIRQIPLRLPADAPPVME 189

Query: 187 VRGEVYISKNDFLALNDEMIAV------GRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           VRGEVY+ +++F ALN+           G K + NPRNAA+G +R+L+P     R L+FF
Sbjct: 190 VRGEVYMRRDEFEALNERQREKIAKGAKGEKTFVNPRNAAAGGVRQLDPAFAAERRLSFF 249

Query: 240 VHGLGKT-----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            +G+G+           +  +E+LQ ++   FPV    R A     +++++  +   R  
Sbjct: 250 AYGVGEITPPEEGGPVFETHFELLQTLKSWCFPVAAQTRLAYGAPELIAFHEAIGRQRDQ 309

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPYDIDG+VYKV+  +LQ+++G  +R PRW ++HK+  ++  T +L IDIQ+GRTG LTP
Sbjct: 310 LPYDIDGVVYKVNSLALQRKMGFVSREPRWAVAHKYPAQEQLTTVLAIDIQVGRTGKLTP 369

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA+L PV +GG  +TNATLHNED  +            +D+RVGD V+V+RAG+VIP+VV
Sbjct: 370 VAKLAPVFVGGVTVTNATLHNEDEARR-----------KDVRVGDTVIVRRAGDVIPEVV 418

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            +++++R  DA  FS P  CP+C S  VR+         A +RCTGGL C+AQ+ E + H
Sbjct: 419 SVLLDKRVQDAPQFSMPRQCPVCGSDAVREEGE------ADYRCTGGLFCAAQRKEAILH 472

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           +  + A  IEGLG + ++    +      IR   D++ L      S  ++       + S
Sbjct: 473 YAHKRAVEIEGLGDKLVEQLVDT----GVIRTLPDLYRLGFTSLASLDRMA------EKS 522

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
            +NL  ++ K +  +L RF+F LGIRHVG   A++LA+++    +               
Sbjct: 523 ASNLVAALEKSKQTTLPRFVFGLGIRHVGEATAKALARHFGQLDSIMDASEE-------- 574

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLV 653
              L+ V  VG I+A++I  F++ P N   VE L    V+   G         +  K  V
Sbjct: 575 --QLLEVADVGPIVAKSIRTFFEQPHNREVVEQLRACGVTWEEGAPAAVAPKPLSGKTFV 632

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL  + R  A++ +   G  V+  +S+KTD ++ G + GSKL KA+ LGV +++E  
Sbjct: 633 ITGTLPGLSRDDAKDRIEAAGGKVAGSVSKKTDYVVAGLDAGSKLVKAEALGVAVIDEAT 692

Query: 714 FLFLLQ 719
            L LL 
Sbjct: 693 LLALLD 698


>gi|209522379|ref|ZP_03270993.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
 gi|209497185|gb|EDZ97426.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
          Length = 688

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/725 (35%), Positives = 391/725 (53%), Gaps = 49/725 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P+   +        + L  E+   +  YY   +P + D+EYD L +  + I    PDL 
Sbjct: 4   TPVPPSATGAPADRAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELERIEAEHPDLI 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125
               P+ P  ++GGE       V H  P LSL   +  ED+  F  RI            
Sbjct: 64  V---PDSPTQRVGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRIGDALGNNASEPA 120

Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IP 182
             + +  E K DG  I++RY  G FV A+ RGDG +GE+V+  +R I +IP  L    +P
Sbjct: 121 VPVDYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVP 180

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
            +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+      R L+FF +
Sbjct: 181 RVLDVRGEVLMFKRDFERLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAY 240

Query: 242 GLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G+G    I       E+L   + +G PVN+         G++ +++ +   R  LPYDID
Sbjct: 241 GIGVLEGIEMPATHSELLDWYKEMGLPVNSERAVVQGAEGLLGFFHAVGEKRDRLPYDID 300

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKV+    Q+ LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG +TPVARLEP
Sbjct: 301 GVVYKVNRRDEQETLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEP 360

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ 
Sbjct: 361 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDR 409

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+ F  P+ CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A
Sbjct: 410 RPADAREFVMPTQCPVCGSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRA 463

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GLG++ +D   +       +R PAD+F L          +  +  F + S  NL D
Sbjct: 464 LDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLD 513

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ K ++ +L RFI++LGIRHVG   A+ LAK++ S                     L+ 
Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SLEELLE 563

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           V  VG ++A++I +F+    N   +E   A  K   P      K     +  + +V TGT
Sbjct: 564 VNDVGPVVAESIHQFFAEDHNRTVIEQLRAPGKVAWPEGPPAPKAPQGVLVGQTVVLTGT 623

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R  A+E +   GA V+  +S+KT  ++ G + GSKL KA++LG+ +++E+    L
Sbjct: 624 LPNLSREDAKEMLEAAGAKVAGSVSKKTSYVVAGADAGSKLAKAEELGIPVLDEDGMRKL 683

Query: 718 LQQYN 722
           L+ ++
Sbjct: 684 LEGHS 688


>gi|260462100|ref|ZP_05810344.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075]
 gi|259031960|gb|EEW33227.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075]
          Length = 734

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/744 (40%), Positives = 443/744 (59%), Gaps = 35/744 (4%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M ++   P+++LS  +A  EL  L +EI+ HD  Y+    P I D+EYDAL+RR  AI  
Sbjct: 1   MAEK---PVDSLSESEAEAELQRLAEEIAEHDRRYHTEDAPTITDAEYDALRRRNLAIEE 57

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L R    + P  ++G        KV H++P LSL K +  ED+  FI R  RF+ +
Sbjct: 58  RFPGLVRE---DSPSLRVGAAPAEGFAKVRHAVPMLSLAKAYTDEDVTDFIERGRRFFDR 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL- 179
             D  I FT EPKIDG   ++RYEKG FV  A RG+G  GED++A +R I  IP  L   
Sbjct: 115 DKDLDIAFTAEPKIDGLSASLRYEKGVFVQGATRGNGTVGEDITANLRTIADIPAKLKGS 174

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
             PEIIE+RGEVY++  +F AL     A G + Y NPRN A+G LR+ + +   +R L F
Sbjct: 175 GWPEIIEIRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKF 234

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +  G T+E  A  QY  +QK    GF ++  + +A +   +V++Y+ ++  RS+L YD
Sbjct: 235 FAYAWGYTTEDPAPTQYGAVQKFADWGFKISPLMVRAKSVEELVAHYHRIEEQRSSLGYD 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD+  LQ++ G     PRW I+HKF  +QA T +  IDIQ+GRTG L PVARL
Sbjct: 295 IDGVVYKVDQLELQRRWGFVTGEPRWAIAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARL 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG ++ N TLHNEDYIKG D++G+ +R G D+R+GD V+++RAG+VIP++V +++
Sbjct: 355 APVTVGGVVVENVTLHNEDYIKGFDSNGQPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVI 414

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R  DA P+ FP  CP+C S   R++N KTGK  +  RCTG L C+AQ +ERL+HFVSR
Sbjct: 415 DKRPADATPYEFPHTCPVCGSPATREINEKTGKEDSRRRCTGELICAAQAVERLRHFVSR 474

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ----QTSTTKIENILGFGDVS 534
            A +IEGLG + +D FF     A  I+  ADIFTL+ R+    +    + E      + +
Sbjct: 475 GALDIEGLGAENIDTFFN----AGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAA 530

Query: 535 V------------------TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                                L+ +I+ RR   L+RFIF+LGIRH+G   A  LA+ + +
Sbjct: 531 SGKTRKNVRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAALLARTFST 590

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +   + +    A   D       +  +GD +  A+ +F+ N RN   +E LL++V P  
Sbjct: 591 IEELIR-VGKETAAAEDPHTVFPSINGIGDTVIDALRDFFGNQRNDDVLEKLLEQVKPKP 649

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
                +  SE+  K +VFTGTL+K+ R +A+    +LGA V+  +S KTD+++ G   GS
Sbjct: 650 YIVTVSADSEVAGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGS 709

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQ 720
           KL+ A +LGV++++E+ +L  + +
Sbjct: 710 KLKLASELGVEVIDEDTWLQRVGK 733


>gi|330445331|ref|ZP_08308983.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489522|dbj|GAA03480.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 671

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/714 (35%), Positives = 406/714 (56%), Gaps = 48/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SI+  ++EL +L +++ YH   YY    P I D+EYD + ++   I    P+       
Sbjct: 1   MSID-LQQELFTLREQLDYHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTV--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +V H I  LSL+  +N +DLR F  R+    +    + + +  E
Sbjct: 57  DSPSQRVGGTALEGFTQVKHEIAMLSLDNAFNDDDLRAFQKRLQDRLRS--GSELNYCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L   + P  +EVRGE
Sbjct: 115 PKLDGLAVSLMYENGVLVQAATRGDGATGENITHNVRTIRAIPLKLQGTDWPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           V++ K  F ALN++ +  G K +ANPRNAA+G LR+L+P    TR L+F+ + +G     
Sbjct: 175 VFMPKKGFEALNEKALKKGEKTFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVEGR 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A+ QYE L +++  G P+   +R+ ++   ++ Y+  +   R +L Y+IDG+V KVD 
Sbjct: 235 ELAETQYERLCQLKAWGLPMCPEIRKVDSIEEVIVYHQSIGEKRQSLGYEIDGVVIKVDG 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+QLG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IDTQQQLGFVARAPRWAIAYKFPAQEEMTVLNNVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D ++ L            + +GD V+++RAG+VIP++  ++ + R   AQ  
Sbjct: 355 SNATLHNADEVERL-----------GVMIGDTVIIRRAGDVIPQIASVVESRRPESAQAI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+CQS++ R          A  RCTGGL C AQ+ E LKHFVSR A +++G G+
Sbjct: 404 VFPTECPVCQSKIERIEGE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGCGE 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F     + T   ++      G  S   L D++   +  
Sbjct: 458 KVIEQLVDREM----VATPADLFKFSAGEVTVLERM------GPKSAQKLVDALKASKLT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI+SLGIR VG   A +LA Y+ + +  +Q               LI VP VGD++
Sbjct: 508 TLPRFIYSLGIREVGEATAANLANYFETLEAISQATKE----------QLIEVPDVGDVV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  I  F++   N+  V+ L +     P I + E+ +   +E K +V TG+L ++ R  A
Sbjct: 558 AAHIFNFFREEHNMAVVKDLQEVGIHWPEIEKPEEGIELPLEGKTVVLTGSLSQLTRSDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  + +LGA V+  +S+KTD+++ G+  GSKL KAQ+L ++I +E++ + L+ +
Sbjct: 618 KAALQKLGAKVTGSVSKKTDLLVAGEAAGSKLAKAQELDIEIWDEQKLVDLMSK 671


>gi|153207803|ref|ZP_01946403.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
 gi|120576355|gb|EAX32979.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
          Length = 670

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/709 (34%), Positives = 387/709 (54%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L +EI+ H+  YY  S+P I DS YD L      +   +P+      P+ 
Sbjct: 4   PAKIQKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETI---TPSS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +  +   D    +  EPK
Sbjct: 61  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKL--DKPFEYVCEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 119 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G      F
Sbjct: 179 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 239 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++N
Sbjct: 299 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 359 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 408 PSRCPVCHAEVIKPEGE------AVARCMGGLYCRAQLRESIKHFASRRALDIEGLGDKL 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++   T+          G+ S  NL  +I K +  +L
Sbjct: 462 VELFIQEK----LIKDITGIYQLKKSAITAL------PRMGEKSAENLLTAIEKSKKTTL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   AR+LA+++       +              +L  +  +G ++A+
Sbjct: 512 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L   +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 562 NIHAFFHQKHNAELINKL-IHLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 621 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669


>gi|320157090|ref|YP_004189469.1| DNA ligase [Vibrio vulnificus MO6-24/O]
 gi|319932402|gb|ADV87266.1| DNA ligase [Vibrio vulnificus MO6-24/O]
          Length = 669

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/709 (35%), Positives = 391/709 (55%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  ++ L  L+Q++ YH   YY    P I D+EYD + R   AI    P+       + P
Sbjct: 3   ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWI---SVDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG    S  +VTH IP LSL+  ++ E+L  F+ R          +   F  EPK+
Sbjct: 60  SQRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHID--AFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I ++P  L     P  IEVRGEV++
Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251
            K  F  LND     G K + NPRNAA+G LR+L+     TR L F+ + +G    I  +
Sbjct: 178 PKAGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y+   +++  G P+    +  N    + ++Y ++ + R  LPY+IDG+V K+D+  +
Sbjct: 238 SSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIVI 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QEKLGFVARAPRWAIAYKFPAQEELTMLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + VGD V+++RAG+VIP++V ++ + R  D +   FP
Sbjct: 358 TLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKDRRKGDEKNIIFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 TACPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+FTL     T   ++      G  S  N+ +++N  +  +L 
Sbjct: 461 EQLVDKEM----VETPADLFTLSAGVLTVLERM------GPKSAQNIVNALNVAKETTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ + +      +            LI VP +G+++A+ 
Sbjct: 511 RFLYSLGIREVGEATAANLARHFKTLEAIQTATHE----------QLIEVPDIGEVVARH 560

Query: 612 IVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   V+A      V P++      +   +  K +V TGTL ++ R  A+  
Sbjct: 561 ITAFFAEEKNQRVVQALIEQGIVWPAVEELGSEIPQPLAGKVVVLTGTLTQLSRGDAKAA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +LGA V+  +S+KTDI+  G+  GSKL KAQ+LGV+I  E+  L LL
Sbjct: 621 LERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669


>gi|209364099|ref|YP_001424866.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
 gi|207082032|gb|ABS76887.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
          Length = 673

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 389/709 (54%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L QEI+ H+  YY  S+P I DS YD L      +   +P+      P+ 
Sbjct: 7   PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETI---TPSS 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +  +   D    +  EPK
Sbjct: 64  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKL--DKPFEYVCEPK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 122 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 181

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G      F
Sbjct: 182 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 242 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG++TPVARLEPV++ G  ++N
Sbjct: 302 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGVVTPVARLEPVSVSGVTVSN 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 362 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 411 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFASRRALDIEGLGDKL 464

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++   T+          G+ S  NL  +I K +  +L
Sbjct: 465 VELFIQEK----LIKDITGIYQLKKSAITAL------PRMGEKSAENLLTAIEKSKKTTL 514

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG  IAR+LA+++       +              +L  +  +G ++A+
Sbjct: 515 PRFLYALGIRGVGDTIARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 564

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L   +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 565 NIHAFFHQKHNAELINKL-IHLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 624 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672


>gi|126462048|ref|YP_001043162.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029]
 gi|166216229|sp|A3PJ74|DNLJ_RHOS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126103712|gb|ABN76390.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029]
          Length = 704

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/712 (42%), Positives = 437/712 (61%), Gaps = 17/712 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L+  +A  EL+ L + I   +  Y+ +  P I D++YDALK R  AI   FP+L R
Sbjct: 6   PVDQLTEAEAATELARLAEAIEAANTAYHTHDAPQISDADYDALKLRNRAIEEQFPELRR 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S   + P +++GG +     KV H +  LSLE  +++ ++  +I RI R+     D  + 
Sbjct: 66  S---DSPSDRVGGALAEGFAKVRHEVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYEKG+ V AA RGDG +GE+V+   R I  +P  L    P+++EV
Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTEL-DGAPDLLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    A G++ +ANPRNAA+G LR+L+P    +R L FF +  G  
Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q+E + ++  LGF  N   R       +++ + E++  R+ L YDIDG+VYKV
Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ++LG RA +PRW I+HKFA + A T+L  IDIQ+GRTG L+PVARL+PV +GG 
Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R   A 
Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP C S  +R+         +  RCTGGL C AQQ+ERLKHFVSR AF+IEGL
Sbjct: 420 RYRFPETCPECGSEAIREPG------DSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++  ++       IR PADIF L  R +    ++EN  G+G  S  NL+ +I  RR
Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L R IF+LGIRHVG   A  LA +Y S+  F   +         +W  L+ +  VG 
Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A ++V  +       AV+AL   ++         V+S +  K +VFTGTL+K+ R +A
Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGKIVVFTGTLEKMSRAEA 649

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA VS  +S +TD+++ G   GSK ++A  LG++ ++E+ +L L+
Sbjct: 650 KARAEALGAKVSGSVSARTDVVVAGPGAGSKAKQAAALGIETIDEDGWLRLI 701


>gi|78223924|ref|YP_385671.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15]
 gi|123756373|sp|Q39S28|DNLJ_GEOMG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78195179|gb|ABB32946.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15]
          Length = 671

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/710 (35%), Positives = 376/710 (52%), Gaps = 44/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A + ++ L  EI  HD  YY   +P + D+EYDAL R    +    P+L     P
Sbjct: 1   MDRNAAERRIAELRAEIRRHDHLYYVLDRPELTDAEYDALYRELLKLEEEHPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +VTH IP LSLE  +   D+ +F  R+ R         I +  E
Sbjct: 58  DSPSRRVGGAPLEKFKQVTHRIPMLSLENAFTDGDIAEFDARVKRALALPAGEEIAYVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  + + YE G     + RGDG  GE+V+  ++ + +IP  L   N PE++EVRGE
Sbjct: 118 PKLDGLAVELVYEYGTLTVGSTRGDGVVGENVTQNLKTVKSIPLRLEGENPPELLEVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEI 249
           V++    F  LN +    G  P+ANPRNAA+G LR+L+     R  L  F +  G+    
Sbjct: 178 VFLPLAAFQRLNAQREEEGEPPFANPRNAAAGSLRQLDSRITARRPLTMFCYAPGEIRGA 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E L  +R  G PV +  RQ     G+++YY EM   R TLPY+IDG+V KVD F
Sbjct: 238 DFGSQGEFLSALRQRGLPVTSLARQVTGVAGVLAYYREMTEKRDTLPYEIDGVVVKVDSF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LGE++RSPRW ++ KF  +QA T + DI   +GRTG++TP A L PV + G  ++
Sbjct: 298 PLQRELGEKSRSPRWAVAVKFPPRQAVTVIEDIVPSVGRTGVITPTANLRPVEVSGVTVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR+GD V+++RAG+VIP VV ++  +R    +   
Sbjct: 358 RATLHNWEEMER-----------KDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERFLP 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S VV+  +        A RC G L+C AQ  E + HF SR+A ++EGLG++
Sbjct: 407 IPAACPECGSEVVKIPDE------VAVRCMG-LSCPAQIRESIIHFASRNAMDMEGLGEK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   +       +   AD++TL R               G+    NL ++I   +   
Sbjct: 460 YIEQLLR----LGLVGNVADLYTLTR------DDFMKFDRMGEKLAENLLNAIEASKKRE 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFIF+LGIRHVG   A+ LA  + S  N A+     +          + +  +G  +A
Sbjct: 510 LSRFIFALGIRHVGEHTAKLLATAFGSIDNLARATEAEL----------LSIREIGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q+I  F+ N  N   +   + E        EK V  +   K  VFTGTL +  R +AQ+ 
Sbjct: 560 QSITTFFHNEGNRETIRR-MVEAGVEPTVEEKKVGGKFTGKTFVFTGTLIRFSRSEAQKM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   G   +  +S+KTD ++ GD  GSKL+KA+QLGV ++ E++FL +L+
Sbjct: 619 VESEGGHAAGSVSKKTDYVVAGDEAGSKLDKARQLGVTVLAEDEFLQMLE 668


>gi|27363688|ref|NP_759216.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus CMCP6]
 gi|81449211|sp|Q8DFK5|DNLJ_VIBVU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|27359804|gb|AAO08743.1| DNA ligase, NAD-dependent [Vibrio vulnificus CMCP6]
          Length = 669

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/709 (35%), Positives = 391/709 (55%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  ++ L  L+Q++ YH   YY    P I D+EYD + R   AI    P+       + P
Sbjct: 3   ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWI---SVDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG    S  +VTH IP LSL+  ++ E+L  F+ R          +   F  EPK+
Sbjct: 60  SQRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHID--AFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I ++P  L     P  IEVRGEV++
Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251
            K  F  LND     G K + NPRNAA+G LR+L+     TR L F+ + +G    I  +
Sbjct: 178 PKAGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y+   +++  G P+    +  N    + ++Y ++ + R  LPY+IDG+V K+D+  +
Sbjct: 238 SSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIVI 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QEKLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + VGD V+++RAG+VIP++V ++ + R  D +   FP
Sbjct: 358 TLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKDRRKGDEKNIIFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 TACPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+FTL     T   ++      G  S  N+ +++N  +  +L 
Sbjct: 461 EQLVDKEM----VETPADLFTLSAGVLTVLERM------GPKSAQNIVNALNVAKETTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ + +      +            LI VP +G+++A+ 
Sbjct: 511 RFLYSLGIREVGEATAANLARHFKTLEAIQTATHE----------QLIEVPDIGEVVARH 560

Query: 612 IVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   V+A      V P++      +   +  K +V TGTL ++ R  A+  
Sbjct: 561 ITAFFAEEKNQRVVQALIEQGIVWPAVEELGSEIPQPLAGKVVVLTGTLTQLSRGDAKAA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +LGA V+  +S+KTDI+  G+  GSKL KAQ+LGV+I  E+  L LL
Sbjct: 621 LERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669


>gi|85059656|ref|YP_455358.1| NAD-dependent DNA ligase LigA [Sodalis glossinidius str.
           'morsitans']
 gi|123766419|sp|Q2NSC2|DNLJ_SODGM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84780176|dbj|BAE74953.1| DNA ligase [Sodalis glossinidius str. 'morsitans']
          Length = 678

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/720 (35%), Positives = 407/720 (56%), Gaps = 51/720 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ  + +  L +++ + +  YY  + P + DSEYD        +    PDL  +   + 
Sbjct: 1   MEQIEQHILRLRKQLRHWEYLYYVEAAPEVPDSEYDRFMAELRTLEAERPDLLTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+   S  +V H +P LSL+ ++       F  R+    ++ DD  + +  E K
Sbjct: 58  PSQRVGGQAQSSFGQVRHEVPMLSLDNVFEEPGFLAFDKRVRDRLKRDDD--MTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEV 191
           +DG  +++ YE G+ V AA RGDG +GED++A +R I TIP  L    N+P ++E+RGEV
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGATGEDITANVRTIRTIPLRLQDHDNLPRLLEIRGEV 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSE-I 249
           ++S+  FL LN+     G K +ANPRNAA+G LR+L+P+   R  L F+ +G+G   +  
Sbjct: 176 FMSEAGFLRLNETAKREGSKVFANPRNAAAGSLRQLDPSITARRPLTFYCYGVGLLEDGE 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +  +E LQ+ +  G PV++ VR+      ++ +Y ++   R +L +DIDG+V KVD  
Sbjct: 236 LPESHWERLQQFKAWGVPVSDRVRRCTGSAAVLDFYRQVHEARLSLGFDIDGVVIKVDSL 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  AR+PRW I++KF  ++  TR+ D++ Q+GRTG +TPVARLEPV + GA+++
Sbjct: 296 ALQQRLGFVARAPRWAIAYKFPAQEQLTRVRDVEFQVGRTGAITPVARLEPVLVSGAMVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D ++ L            + +GD V+V+RAG+VIP++V ++ +ER  + +P +
Sbjct: 356 NATLHNADEVERL-----------GLMIGDTVIVRRAGDVIPQIVGVVTSERPAEVRPVA 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R          A  RCT GL C+AQ+ E LKHFVSR A +I+G+G +
Sbjct: 405 FPTQCPVCSSDVERVEGE------AVLRCTAGLVCAAQRKEALKHFVSRRAMDIDGMGDK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     ++ PAD+F L +   T   ++ +       S  NL +++ K R  +
Sbjct: 459 IIDQLVERE----LVKTPADLFRLNKEILTRLDRMGS------KSAQNLLEALEKARQTT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA  Y +            A    D  SL  V  +G+I+A
Sbjct: 509 FARFLYALGIREVGEATAVNLAAAYGTLD----------ALIAADIDSLTGVQDIGNIVA 558

Query: 610 QAIVEFYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
             +  F++   NI  ++     A+       +        +    K +V TG+L  + R 
Sbjct: 559 THVRHFFEETHNIEVIQDLLSPAIGIRWPEPVAAPVAASDNPFAGKTIVLTGSLSSLSRD 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A++++  LGA VS  +S KTD++I G+  GSKL KAQQL + +M+E + + LL + +  
Sbjct: 619 EAKDHLVALGARVSGSVSAKTDLLIAGEAAGSKLSKAQQLNIPVMDEAEMMRLLGESSDA 678


>gi|304317508|ref|YP_003852653.1| DNA ligase, NAD-dependent [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779010|gb|ADL69569.1| DNA ligase, NAD-dependent [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 659

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/710 (32%), Positives = 379/710 (53%), Gaps = 52/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE+    +  L+ ++++H+  YY   +P I D EYD + R    +    P+    + P
Sbjct: 1   MTIEE---RIKELKDKLNHHNYMYYVLDRPEISDYEYDMMMRELIKLEEEHPEF---KTP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE        TH +   SL   ++  +LR F  R+           + + +E
Sbjct: 55  DSPTQRVGGEPVKEFEPFTHVVVMQSLANAFSEGELRDFDRRVR-----SSVGDVEYVVE 109

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + YE G F   + RGDG  GE+V+  ++ I +IP  L  N+   + VRGEV
Sbjct: 110 LKIDGLSVELIYENGIFTIGSTRGDGFVGENVTNNLKTIKSIPLRLKDNL--NLIVRGEV 167

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ +  F  LN+E    G   +ANPRNAA+G LR+LNP     R L+ FV  L +   + 
Sbjct: 168 FMPRASFEKLNEERELNGESLFANPRNAAAGSLRQLNPKITAKRDLDIFVFNLQRIEGVE 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E L+ ++  GF V+  +++      ++   N +++IR +LPYD DG V KV++  
Sbjct: 228 LKTHVEALEFLKEQGFKVSPHLKKCKNIDEVIEDINYIRTIRDSLPYDTDGAVVKVNDLE 287

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + PRW I+ K+  ++  T++ DI +Q+GRTG LTP A LEPV I G++++ 
Sbjct: 288 KREILGSTVKDPRWAIAFKYPAERQKTKVKDIIVQVGRTGALTPTAILEPVKIAGSIVSR 347

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYIK            +DIR+GD V++++AGE+IP+VV ++V +R    + F  
Sbjct: 348 ATLHNEDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVSVVVEDRKGHEKNFFM 396

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C +  VR          A  RCTG L C A+    + HF S+DA +I+GLG   
Sbjct: 397 PDTCPECGATTVRLPGE------AVTRCTG-LNCPAKLKRGIIHFASKDAMDIDGLGPAV 449

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     +      I   AD++ L+        ++      GD SV NL ++I + +   L
Sbjct: 450 IGQLLDNH----LIHNIADLYYLKYDDLIKLDRM------GDKSVKNLLNAIEESKGRDL 499

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R IF LGI  +G++ A  LA ++ +  +  +            +  L  +  VG  +A 
Sbjct: 500 DRVIFGLGIDLIGSKAASILANHFKTMDSLEEA----------SFDELTNIEEVGPKMAD 549

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I+ F++  +N   ++ L +     + +  +N S+  +    V TGTL    R +A++ +
Sbjct: 550 SIIAFFKEKQNKEILDKLKEAGVNMVKKKSENTSNIFDGLTFVLTGTLSNYTRDEAKKLI 609

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + G  V+  +S+KT+ ++ G +PGSKL KAQQLGVK+++EE+F  +L+Q
Sbjct: 610 EERGGKVTGSVSKKTNYVVAGTDPGSKLSKAQQLGVKVIDEEEFENMLKQ 659


>gi|319782858|ref|YP_004142334.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168746|gb|ADV12284.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 734

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/744 (40%), Positives = 442/744 (59%), Gaps = 35/744 (4%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M ++   P+++LS  +A  EL  L +EI+ HD  Y+    P+I D+EYDAL RR  AI  
Sbjct: 1   MAEK---PVDSLSESEAEAELKRLAEEIAEHDRRYHTEDAPVITDAEYDALARRNLAIEE 57

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L R    + P  ++G        KV H++P LSL K +  +D+  FI R  RF+ +
Sbjct: 58  RFPALVRE---DSPSLRVGAAPAEGFTKVRHAVPMLSLAKAYTDDDVTDFIERGRRFFDR 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL- 179
             +  I FT EPKIDG   ++RYE G FV  A RG+G  GED++A ++ I  IP  L   
Sbjct: 115 DKELDIAFTAEPKIDGLSASLRYENGVFVQGATRGNGAVGEDITANLKTIADIPAKLKGS 174

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
             PE IE+RGEVY++  +F AL     AVG + Y NPRN A+G LR+ +P+   +R L F
Sbjct: 175 GWPETIEIRGEVYMTYAEFEALKQRSAAVGGQDYVNPRNTAAGSLRQKDPSVTASRNLKF 234

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +  G T+   A  QY+ +QK    GF ++  + +A +   ++++Y+ ++  RS L YD
Sbjct: 235 FAYAWGYTTADPAPTQYDSVQKFAEWGFKISPLMVRAKSAEELIAHYHRIEEQRSALGYD 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD+  LQ++ G     PRW I+HKF  +QA T +  IDIQ+GRTG L PVARL
Sbjct: 295 IDGVVYKVDQLELQRRWGFVTGEPRWAIAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARL 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG ++ N TLHNEDYIKGLD++G+ +R G D+R+GD V+++RAG+VIP++V +++
Sbjct: 355 APVTVGGVVVENVTLHNEDYIKGLDSTGQPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVI 414

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R  DA P+ FP  CPIC S   R++N KTGK  +  RCTG L C AQ +E L+HFVSR
Sbjct: 415 DKRPADAVPYEFPHTCPICGSPATREINEKTGKEDSRRRCTGELICPAQAVEGLRHFVSR 474

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST----TKIENILGFGDVS 534
            A +IEGLG + +D FF     A  IR  ADIFTL+ R+   T     + E      + +
Sbjct: 475 GALDIEGLGAENIDTFFN----AGLIRTAADIFTLRDRRPAVTRALAERREEQARQREAA 530

Query: 535 V------------------TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                                L+ +I+ RR   L+RFIF+LGIRH+G   A  LA+ + +
Sbjct: 531 SGKTRKNVRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLARTFST 590

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +   + +    A   D       V  +GD +  A+ +F+ N RN   ++ALL++V P  
Sbjct: 591 IEELIR-VGKETAAAEDPHSVFPSVNGIGDTVIDALRDFFGNERNDDVLDALLRQVKPKP 649

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
                +  SE+  K +VFTG+L+K+ R +A+    +LGA V+  +S KTD+++ G   GS
Sbjct: 650 YIVNVSADSEVAGKTVVFTGSLEKMTRSEAKAMAERLGAKVAGSVSAKTDLVVAGPGAGS 709

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQ 720
           KL+ A +LG+++++E+ +L  + +
Sbjct: 710 KLKLASELGIEVIDEDAWLARIGK 733


>gi|190359248|sp|A9KCS0|DNLJ_COXBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 670

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 389/709 (54%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L QEI+ H+  YY  S+P I DS YD L      +   +P+      P+ 
Sbjct: 4   PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETI---TPSS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +  +   D    +  EPK
Sbjct: 61  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKL--DKPFEYVCEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 119 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G      F
Sbjct: 179 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 239 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG++TPVARLEPV++ G  ++N
Sbjct: 299 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGVVTPVARLEPVSVSGVTVSN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 359 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 408 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFASRRALDIEGLGDKL 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++   T+          G+ S  NL  +I K +  +L
Sbjct: 462 VELFIQEK----LIKDITGIYQLKKSAITAL------PRMGEKSAENLLTAIEKSKKTTL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG  IAR+LA+++       +              +L  +  +G ++A+
Sbjct: 512 PRFLYALGIRGVGDTIARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L   +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 562 NIHAFFHQKHNAELINKL-IHLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 621 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669


>gi|146293460|ref|YP_001183884.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32]
 gi|166216243|sp|A4Y802|DNLJ_SHEPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145565150|gb|ABP76085.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32]
          Length = 685

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/714 (35%), Positives = 383/714 (53%), Gaps = 51/714 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
             +S E A++ + +L Q ++ H+  YY    P I DSEYD L +    +   FP    + 
Sbjct: 12  ADMSPENAQQVMQALSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVA- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  +   D   F  R+           + F 
Sbjct: 71  --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFGEADFSAFHKRVTDK-----VGEVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALN+   A   K + NPRNAA+G LR+L+     +R L F+ + LG   
Sbjct: 184 GEAFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVE 243

Query: 248 EI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  K  YE LQ+++  G PV+N ++  +    +  YY ++ + RS LP++IDG+V 
Sbjct: 244 PDSYSLGKTHYEQLQQLKSWGLPVSNEIKVCDELDQVFDYYKDILTRRSDLPFEIDGVVM 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 304 KVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I+ L            I++GD V+++RAG+VIP++V I+   R   
Sbjct: 364 GVTVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPET 412

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A    FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 413 ATNIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIEA 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S            A        L  V  V
Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLD----------ALRVATVEQLTAVEDV 566

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G ++AQ +  F+  P N+  ++AL+   V           +  ++ +  V TGTL ++ R
Sbjct: 567 GVVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++EE  L L
Sbjct: 627 NDAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLAL 680


>gi|163802586|ref|ZP_02196478.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
 gi|159173669|gb|EDP58488.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
          Length = 670

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/710 (35%), Positives = 390/710 (54%), Gaps = 47/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   ++L  L++ + YH   YY    P I D+EYD + R    I    PDL      + P
Sbjct: 3   ESVLQQLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPDLVTV---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+      +VTH +P LSL+  ++  +L  F  R     +    N   +  EPK+
Sbjct: 60  SQRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQD--RVVAHNIKQYCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L   N P  +EVRGEV++
Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGENWPTRLEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
            K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G     + A
Sbjct: 178 PKAGFDKLNELARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGAVLA 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE   +++  G P+    R  +    + +YY ++   R  L Y+IDG+V KVD+  +
Sbjct: 238 NSHYERFLQIKSWGLPMCPETRCVDNLEEVKAYYRDILVRREALAYEIDGVVIKVDDIVI 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEP+ +GG  ++NA
Sbjct: 298 QERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + VGD+V+++RAG+VIP+VV +I   R   A+   FP
Sbjct: 358 TLHNADEIERLQ-----------VMVGDQVVIRRAGDVIPQVVSVIKERRPETAREIIFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 NACPVCGSHVERIEGE------AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S TN+ +++ K +  +L 
Sbjct: 461 EQLVDREM----VETPADLFKLSAGVLTVLDRM------GPKSATNVVNALEKSKLTTLP 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+Y+ +     Q               L+ V  +G ++A+ 
Sbjct: 511 RFLYSLGIREVGEATAANLAQYFKNLDAIQQATEE----------QLVDVQDIGVVVAKH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   V+ LL +    P I   ++     +E K +V TGTL ++ R +A+E 
Sbjct: 561 ITTFFSEEKNQAVVQDLLAQGINWPDIASPQEGAERPLEGKTVVLTGTLSQLGRSEAKEA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L++
Sbjct: 621 LQNLGAKVTGSVSKKTDILFAGENAGSKLTKAQELGIEIQTEQDLLNLMK 670


>gi|310768269|gb|ADP13219.1| NAD-dependent DNA ligase LigA [Erwinia sp. Ejp617]
          Length = 670

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/714 (34%), Positives = 401/714 (56%), Gaps = 51/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +    P+L  S   + 
Sbjct: 1   MESVQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAQHPELLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H +P LSL+  ++ E    F  R+    +  DD  I F  E K
Sbjct: 58  PTQRVGAAPLSVFEQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YEKG+ V AA RGDG +GE+++A +R I  IP  L   NIPE +EVRGEV+
Sbjct: 116 LDGLAVSLLYEKGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           +    F  +N++  + G+K +ANPRNAA+G LR+L+P     R L FF +GLG       
Sbjct: 176 MPLVGFEQMNEQARSSGQKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ VR  ++   ++ +Y+++++ R TL +DIDG+V KVD  +
Sbjct: 236 PRSHRARLQRFKAWGLPVSDRVRLCHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GDRV+++RAG+VIP+V+ ++  E   +A+  +F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVV--ETGDNAREIAF 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R      G++VA  RCTGGL C AQ+   LKHFVSR A +I+G+G++ 
Sbjct: 403 PTRCPVCGSDVER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     ++ PA++F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 457 IDQLVDKE----YVKNPAELFELTAGKLTGLDRM------GPKSAQNVVNALVKAKQTTF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGI  VG   A +LA ++ +                 D  +L+ V  VG ++A 
Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLDALMAA----------DLDALMAVQDVGKVVAS 556

Query: 611 AIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N   +    +         +    + + S    K +V TG+L  + R +A
Sbjct: 557 HVRNFLDEESNREIIRLLVDKAGVNWPQVMVVKAEEIDSPFAGKTVVLTGSLSILSRDEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +  LGA VS  +S+KTD++I G+  GSKL KA++LG+ +++E++ + LL +
Sbjct: 617 KDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKARELGIDVIDEQEMIRLLGE 670


>gi|24374425|ref|NP_718468.1| DNA ligase, NAD-dependent [Shewanella oneidensis MR-1]
 gi|81460839|sp|Q8ED70|DNLJ_SHEON RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24348997|gb|AAN55912.1|AE015728_1 DNA ligase, NAD-dependent [Shewanella oneidensis MR-1]
          Length = 689

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/716 (34%), Positives = 392/716 (54%), Gaps = 51/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A++ + A+  + +L Q ++ H+  YY    P I DSEYD L ++   +   +P    + 
Sbjct: 16  QAVTPQTAQPLMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQQLKKLEAEYPQFVLA- 74

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 75  --DSPTQRVGGLALAKFEQITHLKPMLSLDNAFDEADFTAFHKRVSDR-----VGQVSFC 127

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 128 CEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLRLRGNNYPELVEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG   
Sbjct: 188 GEAFMPKAAFEALNERARLKDDKQFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVE 247

Query: 248 E---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  YE LQ+++  G PV++ ++  +  + + +YY ++ + RS LP++IDG+V 
Sbjct: 248 PSSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELNQVFAYYKDILTRRSDLPFEIDGVVM 307

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 308 KVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 367

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  D
Sbjct: 368 GVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRSED 416

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           AQ   FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 417 AQAIVFPQHCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 470

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 471 GMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLALAIEA 520

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S            A        LI V  +
Sbjct: 521 AKTTTLPRFLYALGIREVGEATAANLAAHFGSLD----------ALRIATIEQLIEVEDI 570

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G+++AQ +  F+  P N+  ++AL+   V+             ++ +  V TGTL ++ R
Sbjct: 571 GEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIEAPSADEQPLKGQTWVLTGTLNQLNR 630

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 631 NDAKAQLQVLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 686


>gi|124302218|gb|ABN05294.1| DNA ligase [Geobacillus sp. g]
          Length = 670

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/717 (35%), Positives = 395/717 (55%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA +  + L + +  +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAERRAAELRELLHRYGYEYYVLGRPSVPDAEYDRLMQELMAIEEQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KVTH +P +SL   ++  DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  +R I ++P  L    P  +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLPLRLKE--PVSLEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P     R L+ FV+GL    E+ 
Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E L  ++ LGF VN   R+      ++++ NE    R  LPY+IDG+V KVD F+
Sbjct: 231 IESHSEALDYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  
Sbjct: 291 QQRELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF  
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNP-KCPAQLRERLIHFASRAAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +   AD++ L + Q     ++      G+ S TNL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVHDVADLYRLTKEQLIGLERM------GEKSATNLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +   +     +          + VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATKEEL----------MAVPEIGEKMAG 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+ F+  P     +  L         +      E    S    K +V TG L  + R++
Sbjct: 553 SIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TDI+I G++ GSKLEKAQQLG++I +E +FL  + +  
Sbjct: 613 AKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFLQEINRGK 669


>gi|215918993|ref|NP_819574.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
 gi|218512010|sp|Q83DZ6|DNLJ_COXBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206583878|gb|AAO90088.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
          Length = 673

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/709 (34%), Positives = 387/709 (54%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L QEI+ H+  YY  S+P I DS YD L    + +   +P+      P+ 
Sbjct: 7   PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPETI---TPSS 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +  +   D    +  EPK
Sbjct: 64  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKL--DKPFEYVCEPK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 122 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 181

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G      F
Sbjct: 182 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 242 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++N
Sbjct: 302 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 362 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 411 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFASRRALDIEGLGDKL 464

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++   T+          G+ S  NL  +I K +  +L
Sbjct: 465 VELFIQEK----LIKDITGIYQLKKSAITAL------PRMGEKSAENLLTAIEKSKKTTL 514

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   AR+LA+++       +              +L  +  +G + A+
Sbjct: 515 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVAAE 564

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L   +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 565 NIHAFFHQKNNAELINKL-IHLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 624 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672


>gi|255264005|ref|ZP_05343347.1| DNA ligase, NAD-dependent [Thalassiobium sp. R2A62]
 gi|255106340|gb|EET49014.1| DNA ligase, NAD-dependent [Thalassiobium sp. R2A62]
          Length = 711

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/713 (40%), Positives = 428/713 (60%), Gaps = 18/713 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I ++ L+   A  EL+ L   +   +D Y+    P + D+EYDALKRR  AI   FPDL 
Sbjct: 13  IDVDDLTRTAATDELTWLSYVLGQANDDYHGSDAPQMSDAEYDALKRRNMAIEARFPDLK 72

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    + P +++G        K+TH +  LSL   +  ED+ +F  R+ ++   +D  ++
Sbjct: 73  RG---DSPSDQVGAAPIDGFGKITHVVRMLSLGNAFTDEDVVEFDRRVRKYLGLED--AL 127

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE G  + AA RGDG  GEDV+A  R +  IP+ L  N P+++E
Sbjct: 128 AYTAEPKIDGLSLSLRYEGGVLIQAATRGDGAVGEDVTANARMVQDIPQTLK-NAPDVLE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEVY+S  DF  LN    A G K +ANPRNAA+G LR+LN      R L FF +  G 
Sbjct: 187 VRGEVYMSHADFEDLNTRQEARGAKSFANPRNAAAGSLRQLNAEITKDRPLRFFAYASGD 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A  Q   ++++  LGF  N   +  +    ++++Y  ++  R+TL YDIDG+VYK
Sbjct: 247 LSAPLADTQNAAIERLAALGFSTNPLTQLCDDPEAMIAHYRRIEEQRATLGYDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++  LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL+PV +GG
Sbjct: 307 VNDLGLQRRLGFRSTTPRWAIAHKFPAELAWTTLEAIDIQVGRTGALSPVARLKPVTVGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYIKGLD+ G  +R GRDI VGD V + RAG+VIPK+ D+ + +R   A
Sbjct: 367 VVVSNATLHNEDYIKGLDSKGAPIREGRDIWVGDWVQIYRAGDVIPKICDVDLAKRLATA 426

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           Q + FP  CP C S  VR+      +  A  RC GG+ C AQ +E+LKHFVSR  F+I+G
Sbjct: 427 QAYEFPETCPECGSHAVRE------EGDAVRRCVGGMICPAQAVEKLKHFVSRGGFDIDG 480

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F         ++ PADIFTL+ R  +   +++N  G+GD S +NL+D+I+ +
Sbjct: 481 LGAKQVEQFHSDA----WVKEPADIFTLRDRFGSGLQQLKNREGWGDKSASNLFDAIDDK 536

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I L R IF+LGIRHVG   A  +A  Y ++  F   +   +    D W +LI +  VG
Sbjct: 537 RRIGLGRLIFALGIRHVGDASANLIANRYGTWSAFEGAMTAAVIGEGDAWETLIDIDGVG 596

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++A ++V   Q      +++ L+  +            S +  K +VFTG+L+K+ R +
Sbjct: 597 AVMAGSLVRAMQEEAERASIDRLVAHLDVQEAVQ-VTSDSPVAGKTVVFTGSLEKMTRAE 655

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+     LGA VS  +S KTD+++ G   GSK +KA  LGV+ ++E+ +L L+
Sbjct: 656 AKARAESLGAKVSGSVSAKTDLLVAGPGAGSKAKKAADLGVETIDEDDWLALI 708


>gi|259907817|ref|YP_002648173.1| NAD-dependent DNA ligase LigA [Erwinia pyrifoliae Ep1/96]
 gi|224963439|emb|CAX54927.1| DNA ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477688|emb|CAY73604.1| DNA ligase [Erwinia pyrifoliae DSM 12163]
          Length = 678

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/714 (33%), Positives = 402/714 (56%), Gaps = 51/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +    P+L  S   + 
Sbjct: 1   MESVQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRDLEAQHPELLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H +P LSL+  ++ E    F  R+    +  DD  I F  E K
Sbjct: 58  PTQRVGAAPLSVFEQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YEKG+ V AA RGDG +GE+++A +R I  IP  L   NIPE +EVRGEV+
Sbjct: 116 LDGLAVSLLYEKGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           +    F  +N++  + G+K +ANPRNAA+G LR+L+P     R L FF +GLG       
Sbjct: 176 MPLVGFEQMNEQARSSGQKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ VR  ++   ++ +Y+++++ R TL +DIDG+V KVD  +
Sbjct: 236 PRSHRARLQRFKAWGLPVSDRVRLCHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GDRV+++RAG+VIP+V+ ++  E   +A+  +F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVV--ETGDNAREIAF 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R      G++VA  RCTGGL C AQ+   LKHFVSR A +I+G+G++ 
Sbjct: 403 PTRCPVCGSDVER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     ++ PA++F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 457 IDQLVDKE----YVKNPAELFELTAGKLTGLDRM------GPKSAQNVVNALVKAKQTTF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGI  VG   A +LA ++ +                 D  +L+ V  VG ++A 
Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLDALMAA----------DLDALMAVQDVGKVVAS 556

Query: 611 AIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N+  +    +         +    + + S    K +V TG+L  + R +A
Sbjct: 557 HVRNFLDEESNLEIIRLLVDKAGVNWPQVMVVKAEEIDSPFAGKTVVLTGSLSILSRDEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +  LGA VS  +S+KTD+++ G+  GSKL KA++LG+ +++E++ + LL +
Sbjct: 617 KDRLQALGAKVSGSVSKKTDLVVAGEAAGSKLAKARELGIDVIDEQEMIRLLGE 670


>gi|187924439|ref|YP_001896081.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
 gi|254781278|sp|B2T5K0|DNLJ_BURPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187715633|gb|ACD16857.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
          Length = 688

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/711 (36%), Positives = 390/711 (54%), Gaps = 49/711 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +  + L  E+   +  YY   +P + D+EYD L +  ++I    PDL     P+ P  +
Sbjct: 15  AERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIETEHPDLIV---PDSPTQR 71

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTLEPKI 134
           +GGE       V H  P LSL   +  ED+  F  R+     K        + +  E K 
Sbjct: 72  VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPPVPVDYAAELKF 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  I++RY  G FV A+ RGDG +GE+V+  +R I +IP  L    +P +++VRGEV +
Sbjct: 132 DGLAISLRYVDGAFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPHVLDVRGEVLM 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FA 251
            K DF  LN+   A  +K +ANPRNAA+G LR+L+      R L+FF +G+G    +   
Sbjct: 192 FKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLEGMEMP 251

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E+L   + LG PVN+         G++ +++ +   R  LPYDIDG+VYKV+    
Sbjct: 252 ATHSELLDWYKELGLPVNSERAVVQGAEGLLGFFHGVGEKREKLPYDIDGVVYKVNRRDE 311

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q  LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNA
Sbjct: 312 QDALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA+ F  P
Sbjct: 372 TLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDRRPSDAREFVMP 420

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +
Sbjct: 421 TQCPVCGSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKII 474

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D   +       +R PAD+F +          +  +  F + S  NL DS+ K ++ +L 
Sbjct: 475 DQLVEQN----LVRTPADLFNI------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLA 524

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIRHVG   A+ LAK++ S                    +L+ V  VG ++A++
Sbjct: 525 RFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SVEALLEVNDVGPVVAES 574

Query: 612 IVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           I +F+    N   +E L        P      K     +  K +V TGTL  + R +A+E
Sbjct: 575 IHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPSLAREEAKE 634

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   GA V+  +S+KTD ++ G + GSKL KA++LGV +++E+    LL+
Sbjct: 635 MLEAAGAKVAGSVSKKTDYLVAGADAGSKLAKAEELGVPVLDEDGMRKLLE 685


>gi|23098215|ref|NP_691681.1| NAD-dependent DNA ligase LigA [Oceanobacillus iheyensis HTE831]
 gi|81741485|sp|Q8CXK6|DNLJ_OCEIH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|22776440|dbj|BAC12716.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Oceanobacillus
           iheyensis HTE831]
          Length = 667

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/714 (35%), Positives = 400/714 (56%), Gaps = 52/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQ  K++ SL + ++ +   YY    P + D+EYD   R    +   FPDL      
Sbjct: 1   MNKEQVSKKIESLIELLNQYGYEYYVLDNPTVPDAEYDQKLRELQQLEQDFPDLVME--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG    S  KVTH++P LSL   +N +DLR F  R         D  I F  E
Sbjct: 58  NSPTQRVGGAPLASFQKVTHNVPMLSLGNAFNEQDLRDFARRA----SNGTDQPISFVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE GKFV  A RGDG  GED+++ ++ I +IP  LS+     +EVRGE 
Sbjct: 114 LKIDGLAISLTYENGKFVRGATRGDGTIGEDITSNLKTIRSIP--LSIKEQGTLEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+    FLALN+       +P+ANPRNAA+G LR+L+P     R L+ F++G+G+     
Sbjct: 172 YMPHKSFLALNELREKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGEWENSD 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L +++ LGF  N   ++ NT   ++ Y N     R+ L Y+IDG+V KVD   
Sbjct: 232 LTSHSEHLTRLKELGFKTNKEWKKCNTIDEVIEYVNYWTEHRNDLSYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++A T L DI++ IGRTG++TP A L+PV + G  +  
Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEAMTTLRDIELSIGRTGVVTPTAILDPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD+V++K+AG++IPKVV  +V +R+ D Q F  
Sbjct: 352 ASLHNEDLIR-----------EQDIRIGDKVVIKKAGDIIPKVVRSVVEQRNGDEQEFHM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C + +VR           A RC     C AQ +E L HFVSR+A NI+GLG++ 
Sbjct: 401 PDECPACGNELVRLEEE------VALRCINP-NCPAQLMEGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       ++  AD++ L + +     ++      G+ SVTNL ++I K +  SL
Sbjct: 454 IIQLFQEN----LVQTMADLYRLDKEELLQLERM------GEKSVTNLLEAIEKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA  + + +N  +            +  ++ +  +GD +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMEFETMENLQKAT----------YEDVLAIDEIGDKMAD 553

Query: 611 AIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +IV+++   +    +    E  ++       + E+   S +  K +V TG ++K  R +A
Sbjct: 554 SIVQYFAEEKVTELLSNLRELGVQMEYKGPRKSEQATDSVLSGKTVVLTGKMEKFSRKEA 613

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +E +  LG  V+  +S+KTDI+I G++ GSKL+KA++LG+ + +E+Q   ++ +
Sbjct: 614 KEIIESLGGTVTGSVSKKTDIVIAGEDAGSKLDKAEKLGIDVWSEQQLEDVVGK 667


>gi|110634347|ref|YP_674555.1| DNA ligase, NAD-dependent [Mesorhizobium sp. BNC1]
 gi|123162160|sp|Q11GT5|DNLJ_MESSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110285331|gb|ABG63390.1| DNA ligase, NAD-dependent [Chelativorans sp. BNC1]
          Length = 703

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/714 (42%), Positives = 444/714 (62%), Gaps = 20/714 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP++ L+ EQA+ EL+ L QEI  HD  YY    P + D+EYDAL+RR  AI  AFP+L 
Sbjct: 6   IPVDELTEEQAKDELARLAQEIGRHDRLYYSEDAPEVSDAEYDALRRRNLAIEQAFPNLI 65

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P  +IG        KV H +P LSL+  +  +D+  F+ R+ RF + +    I
Sbjct: 66  RA---DSPSKRIGAPAVEKFEKVRHKVPMLSLDNAFTDDDVVDFVARVRRFLKMEPHAPI 122

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T EPKIDG  ++IRYE G+ V AA RGDG  GE+V+A  RA+  IP VLS + PEI+E
Sbjct: 123 AMTAEPKIDGLSLSIRYENGRLVSAATRGDGQVGENVTANARAVADIPNVLSGDFPEILE 182

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY++  DFLALN+   A G++ Y NPRN A+G LR+L+ +    R L FF +  G+
Sbjct: 183 VRGEVYMTHRDFLALNERQRAEGKQTYVNPRNTAAGSLRQLDASITAARPLKFFAYAWGE 242

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE+ ++ Q  M++ ++  GF  N  +    T   ++ +Y+ ++  R+TL YDIDG+VYK
Sbjct: 243 VSEMPSQTQMGMVEALKSYGFRTNKLMCLCETARELLEHYHAIEERRATLGYDIDGVVYK 302

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ +LQ++LG  +RSPRW I+HKFA ++A T L DIDIQ+GRTG LTPVARLEPV +GG
Sbjct: 303 VNDLALQQRLGYVSRSPRWAIAHKFAAEKAFTILRDIDIQVGRTGALTPVARLEPVTVGG 362

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++TNATLHN + I+ L            I++GD V V+RAG+VIP+++    + R  DA
Sbjct: 363 VVVTNATLHNAEEIERL-----------GIKIGDTVQVQRAGDVIPQILGYAEDRRPADA 411

Query: 426 QPFSFPSFCP-ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           + F FPS CP   ++ VVRD     G+ V   RC+G  AC  Q++E L+ FVSR AF+IE
Sbjct: 412 KEFVFPSVCPCELKTPVVRDSTAGGGEGV-VRRCSGEFACPFQRIEHLRLFVSRRAFDIE 470

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF+   P   ++ PADIFTL  R   +  K+++  G+G VS  NL+ +I  
Sbjct: 471 GLGEKQIEFFFRD--PDLPVKSPADIFTLAERDAQNIKKLKDKEGWGTVSAGNLFAAIEA 528

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +R I L+R I+ LGIRHVG   A +LA+ Y S++ F      I   +      +  +  +
Sbjct: 529 KRTIPLDRMIYGLGIRHVGERTAVTLARGYGSWKAFHDSALAIAGGDLSAREEMDALEDI 588

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           GD +  AI  ++    N   VEAL  +V+  +        S +  K +VFTG L+++ R 
Sbjct: 589 GDAVIDAIATYFAEEHNCRLVEALAAQVNV-LEAERPVADSPVAGKTIVFTGALERMSRD 647

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A++   +LGA V+  +S KTD+++ G   GSKL+KA +LG+++++E+ +   +
Sbjct: 648 EAKDMAERLGAKVAGSVSSKTDLVVAGPGAGSKLKKAAELGIEVIDEDMWFQRI 701


>gi|156973609|ref|YP_001444516.1| NAD-dependent DNA ligase LigA [Vibrio harveyi ATCC BAA-1116]
 gi|166216277|sp|A7MT54|DNLJ_VIBHB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156525203|gb|ABU70289.1| hypothetical protein VIBHAR_01312 [Vibrio harveyi ATCC BAA-1116]
          Length = 670

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/710 (35%), Positives = 390/710 (54%), Gaps = 47/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD + R    I    P+L      + P
Sbjct: 3   ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTV---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+      +VTH +P LSL+  ++  +L  F  R     +        +  EPK+
Sbjct: 60  SLRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQD--RVVGHTIKQYCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L     P  +EVRGEV++
Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKGWPTRLEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
            K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G       A
Sbjct: 178 PKAGFDKLNENARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGATLA 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE   +++  G P+    ++ ++   + +YY ++ + R  L Y+IDG+V KVD+ ++
Sbjct: 238 NSHYERFLQIKSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKVDDIAI 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEP+ +GG  ++NA
Sbjct: 298 QERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + VGD+V+++RAG+VIP+VV +I   R   A+   FP
Sbjct: 358 TLHNADEIERLQ-----------VMVGDQVVIRRAGDVIPQVVSVIKERRPETAREILFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 DACPVCGSHVERIEGE------AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S TN+ +++ K +  +L 
Sbjct: 461 EQLVDREM----VETPADLFKLSAGVLTVLERM------GPKSATNVVNALEKSKLTTLP 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+Y+ +     Q               LI V  +G I+A+ 
Sbjct: 511 RFLYSLGIREVGEATAANLAQYFKNLDAIQQATEE----------QLIEVQDIGVIVAKH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   V+ LL +    P I   ++ V   +E K +V TGTL ++ R +A+E 
Sbjct: 561 ITTFFGEEKNQAVVQDLLAQGINWPEIAAPQEGVELPLEGKTVVLTGTLSQLGRSEAKEA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L++
Sbjct: 621 LQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLLNLMK 670


>gi|7673996|sp|O87703|DNLJ_BACST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3688229|emb|CAA09732.1| DNA ligase [Geobacillus stearothermophilus]
          Length = 670

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/717 (35%), Positives = 392/717 (54%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA +  + L + ++ +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KV H +P +SL   +   DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L    P  +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKE--PVSLEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P     R L+ FV+GL     + 
Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  ++ LGF VN   R+      ++++ +E    R  LPY+IDG+V KVD F+
Sbjct: 231 IASHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  
Sbjct: 291 QQRALGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF+ 
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLEGE------VALRCLNP-NCPAQLRERLIHFASRAAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +R  AD++ L + Q     ++      G+ S  NL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVRDVADLYCLTKEQLVGLERM------GEKSAANLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +   +     +          + VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLERATKEEL----------MAVPEIGEKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           AI  F+  P     ++ L         +      E    S    K +V TG L  + R++
Sbjct: 553 AITAFFAQPEATELLQELRAYGVNMAYKGPKRSAEAPADSAFAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TD++I G++ GSKLEKAQQLG++I +E +FL  + +  
Sbjct: 613 AKEQIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDESRFLQEINRGK 669


>gi|120598462|ref|YP_963036.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1]
 gi|166216244|sp|A1RII7|DNLJ_SHESW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120558555|gb|ABM24482.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1]
          Length = 685

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/714 (35%), Positives = 382/714 (53%), Gaps = 51/714 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
             +S E A++ + +L Q ++ H+  YY    P I DSEYD L +    +   FP    + 
Sbjct: 12  ADMSPENAQQVMQALSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVA- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  +   D   F  R+           + F 
Sbjct: 71  --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFGEADFSAFHKRVTDK-----VGEVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALN+   A   K + NPRNAA+G LR+L+     +R L F+ + LG   
Sbjct: 184 GEAFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVE 243

Query: 248 EI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  K  YE LQ+++  G PV+N ++       +  YY ++ + RS LP++IDG+V 
Sbjct: 244 PDSYSLGKTHYEQLQQLKSWGLPVSNEIKVCEELDQVFDYYKDILTRRSDLPFEIDGVVM 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 304 KVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I+ L            I++GD V+++RAG+VIP++V I+   R   
Sbjct: 364 GVTVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPET 412

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A    FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 413 ATDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIEA 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S            A        L  V  V
Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLD----------ALRVATVEQLTAVEDV 566

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G ++AQ +  F+  P N+  ++AL+   V           +  ++ +  V TGTL ++ R
Sbjct: 567 GVVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++EE  L L
Sbjct: 627 NDAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLAL 680


>gi|261418603|ref|YP_003252285.1| NAD-dependent DNA ligase LigA [Geobacillus sp. Y412MC61]
 gi|319765418|ref|YP_004130919.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52]
 gi|261375060|gb|ACX77803.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC61]
 gi|317110284|gb|ADU92776.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52]
          Length = 670

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/717 (35%), Positives = 395/717 (55%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA +  + L + +  +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KVTH +P +SL   ++  DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  +R I ++P  L    P  +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLPLRLKE--PVSLEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P     R L+ +V+GL    E+ 
Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLYVYGLANAEELG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E L  ++ LGF VN   R+      ++++ NE    R  LPY+IDG+V KVD F+
Sbjct: 231 IESHSEALHYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  
Sbjct: 291 QQRELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF  
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNP-KCPAQLRERLIHFASRAAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +   AD++ L + Q     ++      G+ S TNL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVHDVADLYRLTKEQLIGLERM------GEKSATNLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +   +     +          + VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATKEEL----------MAVPEIGEKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+ F+  P     +  L         +      E    S    K +V TG L  + R++
Sbjct: 553 SIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TDI+I G++ GSKLEKAQQLG++I +E +FL  + +  
Sbjct: 613 AKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFLQEISRGK 669


>gi|145589636|ref|YP_001156233.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|190359270|sp|A4SYV5|DNLJ_POLSQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145048042|gb|ABP34669.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 671

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/711 (38%), Positives = 395/711 (55%), Gaps = 48/711 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S        + L+ E++  +  YY    P++ D EYD L R    I  A P    SE   
Sbjct: 5   SPTNLADRYAFLQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAAHPQWVTSE--- 61

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GG        VTH++P LSL   +   +L  F  R            + +  E 
Sbjct: 62  SLSQRVGGTALKEFDSVTHAVPMLSLNNAFEDSELIAFDRRCREALH---VEHVAYAGEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191
           K DG  I++RYE G  V AA RGDG SGEDV+A I+ I  IP  L+  NIPEI+EVRGEV
Sbjct: 119 KFDGLAISLRYENGTLVTAATRGDGASGEDVTANIKTIRAIPLKLTGKNIPEILEVRGEV 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTSE 248
           ++   DF  +N +   +G K +ANPRNAA+G LR+L+      R L+FF +GLG  +   
Sbjct: 179 FMYLKDFEKMNRQAAELGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPQS 238

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   E+L     LG PV +  R  ++   I+++YNE+ + R +LPYDIDG+VYKV+ 
Sbjct: 239 WLPKTHEELLNAYVELGLPVCSERRVLHSVEEILAFYNEIGAKRDSLPYDIDGVVYKVNS 298

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+ Q +LG  +R+PR+ ++HK+  ++A T +L ID+Q+GRTG +TPVARL PV +GG  +
Sbjct: 299 FAEQAKLGFVSRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTV 358

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHNED +K            +D+R+GD V V+RAG+VIP+VV +I   R  DA+ F
Sbjct: 359 TNATLHNEDEVKR-----------KDVRIGDTVSVRRAGDVIPEVVSVIKERRPSDAKEF 407

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             PS CP+C S + R  +       A  RC+GGL C AQ+ + L HF  R A +IEGLG+
Sbjct: 408 VMPSRCPVCDSHIERLADE------AVARCSGGLFCGAQRKQALIHFAHRRALDIEGLGE 461

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D           +R PAD++ L        T + N+   G+ S  NL  +IN+ RN 
Sbjct: 462 KIVDQLVDQN----LVRTPADLYRL------GFTALANLERMGEKSADNLIQAINQSRNT 511

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFIF+LGIRHVG   A+ LA +Y S                     L+ V  VG ++
Sbjct: 512 TLARFIFALGIRHVGETTAKDLANHYQSMHALMDA----------SVEELLTVKDVGPVV 561

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A +I  F Q   N   +E LL      +   EK +S+ +  K  V TGT   + R +A++
Sbjct: 562 ADSITSFMQEAHNREVIEQLLAS-GMQLSVEEKIISAAVFGKTFVLTGTFPTMTRDEAKD 620

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + GA V+  +S+KTD ++ G + GSKL KA++LGV +++EE+ L LL+
Sbjct: 621 LLEKAGAKVAGSVSKKTDYVVAGTDAGSKLAKAEELGVPVIDEEEMLNLLK 671


>gi|262402686|ref|ZP_06079247.1| DNA ligase [Vibrio sp. RC586]
 gi|262351468|gb|EEZ00601.1| DNA ligase [Vibrio sp. RC586]
          Length = 669

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/711 (34%), Positives = 385/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L Q +  H   YY    P I D+EYD L R    I    P+L     P+ 
Sbjct: 1   MSNVEQRLTELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLEIEAQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H IP LSL+  ++  +L  F  R+             F  EPK
Sbjct: 58  PSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIP--AVQQSHFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGVDFPVRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALQKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGQL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+   +++  G P+    +   +   + S+Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 TTSHYQRFLQLKNWGLPICPETKVVTSLADVKSFYQDILQRRQSLVYEIDGVVIKVDDTQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+V+RAG+VIP++V +++  R  DA+P  F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVVRRAGDVIPQIVSVVLERRQADAKPIRF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS + R          A  RCTGGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTCCPVCQSEIERVEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA+++L+ +  AQ               LI VP VG ++A 
Sbjct: 509 PRFLYALGIREVGEATALNLAQHFLTLEAIAQA----------SIEQLIEVPDVGGVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  L++     P +      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLHAFFAQQRNQQVIAELVELGITWPVLAAVPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E+  +  ++
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLTKAAELGIQVLDEQALIEFVK 669


>gi|307266289|ref|ZP_07547829.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918667|gb|EFN48901.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 662

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/709 (34%), Positives = 385/709 (54%), Gaps = 49/709 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+    + P+ P 
Sbjct: 2   EPKERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---KTPDSPS 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE        TH +P LSL   ++  +LR F  R+           + + +E KID
Sbjct: 59  QRVGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVRE-----AVGDVEYVVELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE G F   + RGDG  GE+V+  ++ I +IP  L  +    + VRGEV++ +
Sbjct: 114 GLSVELIYENGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDD--ASLVVRGEVFMPR 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN+E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L K      K  
Sbjct: 172 TSFEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTH 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ ++  GF V    ++ +    ++    E++++R  LPYDIDG V KV++   ++ 
Sbjct: 232 IETLEFLKEQGFKVIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREI 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG+ A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLH
Sbjct: 292 LGQTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NEDYIK            +DIR+GD V+V++AGE+IP+VV+++  ER    + F  P  C
Sbjct: 352 NEDYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C +  VR          A  RCTG L C AQ L  + HF S+DA +IEGLG   ++  
Sbjct: 401 PECGALAVRLPGE------AIRRCTG-LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQL 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    I   AD++ L+        ++      GD SV NL ++I + +   L+R +
Sbjct: 454 LSK----GLIHNIADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLL 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGI  +G++ A+ +A+++ +  N  +            +    ++P +G  +A++IV 
Sbjct: 504 FGLGINLIGSKAAQVIAEHFKTMDNIMKA----------KFEDFTQLPDIGPKMARSIVS 553

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+   +N+  +E L           +  VS+  E K  V TGTL+   R +A   + + G
Sbjct: 554 FFAEKQNVEIIEKLKNAGVNMKKLSKGKVSNIFEGKTFVLTGTLENYTREEATRMIEERG 613

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             V+  +S+KTD I+VG +PGSKL+KAQ+LG+KI++E+QF  +L+  N 
Sbjct: 614 GKVTNSVSKKTDYILVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGENI 662


>gi|254226208|ref|ZP_04919802.1| DNA ligase [Vibrio cholerae V51]
 gi|125621244|gb|EAZ49584.1| DNA ligase [Vibrio cholerae V51]
          Length = 669

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         +   F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHS--AFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|229542656|ref|ZP_04431716.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1]
 gi|229327076|gb|EEN92751.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1]
          Length = 668

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/702 (35%), Positives = 381/702 (54%), Gaps = 53/702 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L + ++ +   YY   +P + D+EYD L R    I +A P+L     P+ P  ++GGE 
Sbjct: 12  ELRKLLNQYSYEYYVLDRPSVPDAEYDRLLRELQEIENAHPELI---TPDSPTQRVGGEP 68

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                KV H  P LSL   +N  DLR F  R+      +      +  E KIDG  I+++
Sbjct: 69  LSGFAKVVHDTPMLSLANAFNEADLRDFDRRVRETAGYR----YEYVCELKIDGLAISLK 124

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE G FV  + RGDG  GED++A +R + +IP  L LN P  IE RGE ++ K  F ALN
Sbjct: 125 YENGLFVQGSTRGDGTIGEDITANLRTVRSIP--LRLNEPVTIEARGECFMPKKSFEALN 182

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
                 G +P+ANPRNAA+G LR+L+P     R L+ F++ +G T+ +      E L  +
Sbjct: 183 RIKEENGEEPFANPRNAAAGSLRQLDPKIAASRNLDTFMYAIGDTTGLDISAHSEGLAYL 242

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           + LG  VN   R       ++ +  E    R  LPY+IDG+V KV++++ +  LG   +S
Sbjct: 243 KRLGLKVNKETRICRDIGEVLKFIAEWTEKRPALPYEIDGIVIKVNDYAQEAALGTTVKS 302

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF  ++  T+L  I++++GRTG++TP A L PV + G  +  ATLHNED I+ 
Sbjct: 303 PRWAIAYKFPAEEVVTKLTGIEVKVGRTGVVTPTAILNPVRVAGTTVQRATLHNEDLIR- 361

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD V+VK+AG++IP+VV  I   R  + Q FS PS CP C S +
Sbjct: 362 ----------EKDIRIGDYVVVKKAGDIIPEVVRPIPERRTGEEQAFSMPSHCPDCGSEL 411

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           VR  +        A RC     C AQ  E L HFVSR+A NIEGLG++ +   F  E   
Sbjct: 412 VRLEDE------VALRCINP-NCPAQIREGLIHFVSRNAMNIEGLGEKVISQLFAHE--- 461

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I   ADI+ L++ +     ++      G+ SV+NL  +I   +  SLE+ +F LGIRH
Sbjct: 462 -LIHNVADIYRLKKEELLQLERM------GEKSVSNLLAAIEASKKNSLEKLLFGLGIRH 514

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VGA+ A+ LA ++ + +  ++     +            +P +G+ +A +I  +++N   
Sbjct: 515 VGAKAAKILAAHFETMERLSKATREELEA----------IPDIGEKMADSIAAYFENEEA 564

Query: 622 ICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  V  L       + +      ++N  S    K +V TG L  + R++A+E +  LGA 
Sbjct: 565 LGLVRELAALGVNMVYKGPKRAEKRNADSPFAGKTVVLTGKLVNMTRNEAKEKLEALGAN 624

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V+  +S+ TD++I G++ G+KL KA+QLG+++ +E  FL  L
Sbjct: 625 VTGSVSKNTDLVIAGEDAGTKLTKAEQLGIEVWDEAAFLERL 666


>gi|323495433|ref|ZP_08100510.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
 gi|323310356|gb|EGA63543.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
          Length = 669

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 386/709 (54%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q +++L+ L + + YH   YY    P I D+EYD L R    I    P+L      + P
Sbjct: 3   QQIQEKLNQLRESLHYHGVKYYVEDSPEIPDAEYDRLMRELMEIEAQHPELV---SLDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG        V H IP LSL+  ++  +L  F  R+         +   F  EPK+
Sbjct: 60  SQRVGGAPLDGFDSVRHEIPMLSLDNAFDDSELDAFHKRMSDRLSGTKLD--VFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ Y  G FV AA RGDG +GE+++  +R I  IP  L     PE +EVRGEV++
Sbjct: 118 DGLAVSLLYVNGVFVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPERLEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
            K  F  LN++ +  G K + NPRNAA+G LR+L+      R L+F+ + +G       +
Sbjct: 178 PKEGFDKLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLSFYAYSVGVVEGATLS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +  YE   +++  G P+    R       + +YY ++ + R  LPY+IDG+V KVD  + 
Sbjct: 238 ESHYERFLQLKGWGLPMCPETRLVANLEEVKAYYQDILTRRDALPYEIDGVVIKVDSIAA 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NA
Sbjct: 298 QEQLGFVARAPRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + VGD V+++RAG+VIP++V I+ + R  +A+   FP
Sbjct: 358 TLHNADEIERL-----------GVMVGDCVVIRRAGDVIPQIVSIVSDRRPENAREIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG++ +
Sbjct: 407 TNCPVCNSAVERVEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S  N+ D++ K +  +L 
Sbjct: 461 EQLVDREM----VETPADLFKLSAGVITVLDRM------GPKSAQNVVDALVKAKETTLP 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LAK++ + +      ++ +          I V  +G I+A  
Sbjct: 511 RFLYSLGIREVGEATAANLAKHFKTLEAVQAASHDDL----------IEVQDIGAIVASH 560

Query: 612 IVEFYQNPRNICAVE--ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   ++   +     P I   +++    +  K +V TG+L ++ R  A+  
Sbjct: 561 ITAFFAQDKNQMVIDDLRVQGVHWPDIEEKDQDAPQPLAGKVVVLTGSLSQLTRSDAKAA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA V+  +S+KTDI+  G+N GSKL KAQ LG++I  EE  + L+
Sbjct: 621 LEGLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIRTEEDLIALM 669


>gi|319426762|gb|ADV54836.1| DNA ligase, NAD-dependent [Shewanella putrefaciens 200]
          Length = 685

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/714 (35%), Positives = 383/714 (53%), Gaps = 51/714 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
             +S E A++ + +L Q ++ H+  YY    P I DSEYD L +    +   FP    + 
Sbjct: 12  ADMSPENAQQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQCLIKLEAQFPQFIVA- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG   +   ++TH  P LSL+  +   D   F  R+           + F 
Sbjct: 71  --DSPTQRVGGLALVKFDQITHLKPMLSLDNAFGEADFSAFHKRVTDK-----VGEVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALN+   A   K + NPRNAA+G LR+L+     +R L F+ + LG   
Sbjct: 184 GEAFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVE 243

Query: 248 EI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  K  YE LQ+++  G PV+N ++       +  YY ++ + RS LP++IDG+V 
Sbjct: 244 PDSYSLGKTHYEQLQQLKSWGLPVSNEIKVCEELDQVFDYYKDILTRRSDLPFEIDGVVM 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 304 KVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I+ L            I++GD V+++RAG+VIP++V I+   R   
Sbjct: 364 GVTVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPET 412

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A    FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 413 ATDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIEA 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S            A        L  V  V
Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLD----------ALRVATVEQLTAVEDV 566

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G ++AQ +  F+  P N+  ++AL+   V           +  ++ +  V TGTL ++ R
Sbjct: 567 GVVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++EE  L L
Sbjct: 627 NDAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLAL 680


>gi|297616809|ref|YP_003701968.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
 gi|297144646|gb|ADI01403.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
          Length = 668

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/713 (34%), Positives = 377/713 (52%), Gaps = 47/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  R+    L +EI  HD  YY   +P+I D+EYD L R    +  A+PDL     P+ 
Sbjct: 1   METPRERAEKLREEIRKHDYHYYVLDQPLISDAEYDRLFRELVELEQAYPDLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE+      V H +P LSL+  +N  +LR F  R+        D ++ +  E K
Sbjct: 58  PTQRVGGEVLKGFTPVQHRVPLLSLDNAFNERELRDFNRRLKERLG---DEAVAYVCELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I + Y+ G  +  A RGDG  GEDV+A IR I ++P  L+  +P  +EVRGEVY+
Sbjct: 115 IDGVSIALVYQDGVLMSGATRGDGIVGEDVTANIRTIKSLPLRLTYPLP-RVEVRGEVYM 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F  LN E    G K +ANPRNAA+G +R+L+P     R L   V+ +         
Sbjct: 174 PKEAFARLNREREDRGEKTFANPRNAAAGSIRQLDPKVTAGRTLGLLVYDILHLEGKEID 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+ +  LGFPV+   R   +   ++ Y  E +  R  LPY+IDG+V K++    +
Sbjct: 234 SQRETLEFLSELGFPVDRNFRWCASLDEVLEYCEEWQGRRHELPYEIDGVVVKLNSLPAR 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A+SPRW I++KF  ++  T+++ I++ +GRTG++TP A +EPV++ G  ++ A+
Sbjct: 294 QLLGATAKSPRWAIAYKFPAEEKETKIVAIELNVGRTGVITPTAVMEPVSLAGTTVSRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+            +DIRVGD V+V +AG++IP+VV  +  +R      F  P 
Sbjct: 354 LHNYDLIR-----------EKDIRVGDMVVVHKAGDIIPEVVRSLPEKRTGKEIEFKMPD 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C SRVVR           A+RC   + C A+  E L  F SR+A +IEGLG   ++
Sbjct: 403 KCPACGSRVVRFSGE------VAYRCDN-INCPARLKESLIFFASREAMDIEGLGPALVE 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      +   AD++ L+  +     ++         S  NL  ++ + +   L R
Sbjct: 456 QLVDRGM----VSNVADLYYLRAEELAGLERMGQ------KSAANLIRALEQSKGRPLHR 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +LGIR+VG + AR LA++Y   + F          ++ D   L+ +P +G+ IA+++
Sbjct: 506 LLNALGIRYVGLKTARILAEHYRDIERF----------SDIDREELMSIPEIGEKIAESV 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F+  PRN  ++  L K    ++         S+   K  V TG L+ + R++A + + 
Sbjct: 556 TAFFAEPRNWDSIHKLKKAGVNTVEPEFSMAQDSQFAGKTFVLTGALESMTRNEATKAIE 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             G  V+  +SRKTD ++ G +PGSK +KA  LGV +++E QFL LL +    
Sbjct: 616 DRGGKVTNSVSRKTDFVVAGRDPGSKYDKAVALGVTVLDENQFLQLLGRQAKA 668


>gi|90021526|ref|YP_527353.1| DNA ligase (NAD+) [Saccharophagus degradans 2-40]
 gi|123090491|sp|Q21JI8|DNLJ_SACD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89951126|gb|ABD81141.1| DNA ligase, NAD-dependent [Saccharophagus degradans 2-40]
          Length = 674

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/707 (36%), Positives = 390/707 (55%), Gaps = 45/707 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L SL+ +I+YH+  YY    P + D+EYD L +   AI   FP+L      + P  ++G
Sbjct: 10  KLESLKNQINYHNKLYYVLDAPELPDAEYDKLFQELQAIEQQFPELVTE---DSPTQRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                S   + H  P LSL+ ++N+E+L  F  RI        D S+ ++ EPK DG   
Sbjct: 67  AAPLDSFASIEHKRPMLSLDNVFNVEELFAFDKRIRDRIN--ADASLEYSCEPKFDGIAA 124

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDF 198
           ++ YE G+   AA RGDG  GED++  +R I ++P  L  N IP ++EVRGEVY+ K  F
Sbjct: 125 SLLYENGRLKTAATRGDGTVGEDITQNMRTIGSVPLKLEGNNIPAVLEVRGEVYMPKAGF 184

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYE 256
           L +N+E +A   K + NPRNAA+G LR+LNP     R L F  + +G           YE
Sbjct: 185 LRINEEALAKNEKTFVNPRNAAAGSLRQLNPQITAKRPLVFCAYNVGVVEGGELPATHYE 244

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L ++   GF V+   R A       +YY+ +++ R +L YDIDG+V+KV+ F LQ++LG
Sbjct: 245 TLTQLFEWGFLVSEERRIAKGIEECEAYYHYLEAKRESLAYDIDGIVFKVNAFDLQERLG 304

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+HKF  ++A T L D++ Q+GRTG +TPVA+L+P+ +GG  ++NATLHN+
Sbjct: 305 FVSRAPRWAIAHKFPAQEALTVLHDVEFQVGRTGAITPVAKLQPIFVGGVTVSNATLHNK 364

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            IRVGD V+V+RAG+VIP++V I+ ++R  DA+   FP+ CP+
Sbjct: 365 DEIERL-----------GIRVGDTVIVRRAGDVIPQIVSIVESKRPQDAREIKFPTACPV 413

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V            AA RCTGGL C AQ+ E +KHF SR A +I+GLG + +D    
Sbjct: 414 CGSDVESVEGE------AAIRCTGGLVCEAQRKESIKHFASRQAMDIDGLGDKIVDQLVD 467

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     +   AD++TL         ++         S  NL  +I   +  SL++ +++
Sbjct: 468 NK----LVNDVADLYTLDIPTLAGLERLGA------KSAANLVAAIEASKQTSLDKILYA 517

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   AR+LA ++ +                     LI V  VG ++A  +V+F+
Sbjct: 518 LGIREVGRATARNLANHFCTLNKVMDATQE----------QLIEVTDVGPVVAHYVVDFF 567

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N   +E L+          + +    +E    V TG+L+ + R +A++ +  LGA 
Sbjct: 568 AQANNREVIEKLIAAGVNWPDIEKVDGVKPLEGTTYVLTGSLESLSRDEAKDKLQALGAK 627

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           VS  +S KT  ++ G   GSKL KA++LG+ I++E   L LL+++  
Sbjct: 628 VSGSVSAKTTCVVAGPGAGSKLAKAEKLGLAILDEVGLLALLEEHGV 674


>gi|120554094|ref|YP_958445.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8]
 gi|166215819|sp|A1TZT9|DNLJ_MARAV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120323943|gb|ABM18258.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8]
          Length = 678

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/716 (35%), Positives = 393/716 (54%), Gaps = 46/716 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  RK + SL   +  H+  YY    P I D+EYD L R    +    P+LA     + 
Sbjct: 5   PETIRKRVDSLRATLEDHNYYYYVQDDPRIPDAEYDRLFRELQKLEAEHPELATE---DS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     S  +V H +P LSL+  ++ ++LR F  R+        D +I +  EPK
Sbjct: 62  PTRRVGSSAETSFEEVIHRLPMLSLDNAFSEDELRDFDRRVRDRLG--ADGAIEYVCEPK 119

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG++GED++A IR IP++P  L     P+++EVRGEVY
Sbjct: 120 LDGLAVSLHYENGTLTRAATRGDGYTGEDITANIRTIPSVPLKLRGSGYPDLVEVRGEVY 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSE-IF 250
           + +  F  LN+ +   G K + NPRNAA+G LR+   T   R  L    + +  T E + 
Sbjct: 180 MPRAGFEKLNERLAEQGEKTFVNPRNAAAGSLRQKKSTVTARRPLELCAYSMAVTDESVL 239

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  ++ LQ +R  GF +N  +R+A      +  YNE+ + R +LPY+IDG+V+KV+   
Sbjct: 240 PETHWDSLQLVRDWGFRINPEMRKAEGVEACLDAYNELMAKRDSLPYEIDGIVFKVNRLD 299

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  +R+PRW I+HKF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++N
Sbjct: 300 LQQELGFVSRAPRWAIAHKFPAQEELTIIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSN 359

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           D+ +GD V ++RAG+VIP+VV ++  +R  +A     
Sbjct: 360 ATLHNMDEIRRL-----------DVHIGDTVFIRRAGDVIPQVVKVVPEKRPAEAPMVEM 408

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S +V+          A  RC+GGL C AQ+ E ++H+ SR A +IEGLG + 
Sbjct: 409 PEHCPVCGSDIVQIEGE------AVARCSGGLYCPAQRKEAIRHYASRKAMDIEGLGDRL 462

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           +   AD++ L + Q  S  ++      GD S  NL  +I++ R   L
Sbjct: 463 IEVLVDEGM----VSTVADLYRLTKFQIASLERM------GDKSAANLIAAIDRSREPVL 512

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A+ LA ++ + +          A +  D  +L  VP VG I+A 
Sbjct: 513 WRFLYALGIREVGEATAKGLAAHFGTLE----------AISAADEETLQTVPDVGPIVAG 562

Query: 611 AIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F+  P N   + A     V+    +        +  +  V TGTL  + R +A+E 
Sbjct: 563 HIRSFFDQPHNQETLAALKEAGVTWQEEQVLSADEQPLNGQTWVLTGTLSGMTRDQAKEK 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           + QLGA V+  +S+KT  ++ G+  GSKL KA+QLGV +++EE    LL+++   +
Sbjct: 623 LEQLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLGVPVLDEEGLANLLREHGIEV 678


>gi|262165212|ref|ZP_06032949.1| DNA ligase [Vibrio mimicus VM223]
 gi|262024928|gb|EEY43596.1| DNA ligase [Vibrio mimicus VM223]
          Length = 682

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/716 (34%), Positives = 384/716 (53%), Gaps = 48/716 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E  ++    + L  L Q +  H   YY    P I D+EYD L R    +  A P+L    
Sbjct: 9   ERFTMSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI--- 65

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG        V H IP LSL+  ++  +L  F  R+             F 
Sbjct: 66  TPDSPSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIP--AVQQSHFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVR 188
            EPK+DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVR
Sbjct: 124 CEPKLDGLAVSLLYENGVLTRAATRGDGATGENITENVRTINSIPLRLQGSDFPVRLEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEV++ K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G   
Sbjct: 184 GEVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIID 243

Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KV
Sbjct: 244 GGELATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKV 303

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+  LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG 
Sbjct: 304 DDIQLQERLGFVARAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEPVFVGGV 363

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+
Sbjct: 364 TVSNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAK 412

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+CQS + R          A  RCTGGL C AQ+ E LKHFVSR A +++GL
Sbjct: 413 PIVFPACCPVCQSEIERIEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVDGL 466

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +
Sbjct: 467 GDKVIEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAK 516

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF+++LGIR VG   A +LA+++L+    AQ   +           LI VP VG 
Sbjct: 517 QTTLPRFLYALGIREVGEATALNLAQHFLTLDAIAQASMD----------QLIEVPDVGG 566

Query: 607 IIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++A  +  F+   RN   +  L+                  S +  K +V TG+  ++ R
Sbjct: 567 VVASHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALAGKVVVLTGSFTQLSR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + A+  +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E+  +  L+
Sbjct: 627 NDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQALIDFLK 682


>gi|302878427|ref|YP_003846991.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2]
 gi|302581216|gb|ADL55227.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2]
          Length = 674

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/710 (35%), Positives = 392/710 (55%), Gaps = 50/710 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ + +L  EI  H+  YY    P + D+ YD L R    +    P+   S   + P  
Sbjct: 6   VQQRIKALRSEIEAHNYQYYVLDAPTVPDAGYDTLFRELQRLEAQHPEFLTS---DSPTQ 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G        +V H  P LSL   ++ +++  F  R+         + + + +E K DG
Sbjct: 63  RVGAAPLKYFAEVPHRTPMLSLNNAFSADEVIAFDARVRDALG---IDEVEYAVELKFDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----IEVRGEVY 192
             I + Y  G FV  A RGDG +GEDV+  +R + +IP  L     E+    +EVRGEV 
Sbjct: 120 LAINLSYRNGIFVQGATRGDGSTGEDVTENLRTVRSIPLRLKEANGEVLCADVEVRGEVL 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           +   DF  LN++    G K + NPRNAA+G LR+L+     TR+L+F+ +G+G    +  
Sbjct: 180 MFTRDFDLLNEQQRLNGEKEFVNPRNAAAGSLRQLDSAVTATRHLSFYAYGVGLCDGVNL 239

Query: 252 KGQYEM-LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            G++++ + ++   G PV           G++ YY EM ++R+ LP+ IDG+VYKV++ +
Sbjct: 240 SGKHDLQMAQLADWGVPVATQRSTVQGVAGLLDYYKEMGALRAALPFAIDGVVYKVNDIA 299

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  +R+PR+ I+HKF  ++A T LLDID+Q+GRTG LTPVARL PV +GG  +TN
Sbjct: 300 QQQMLGFVSRAPRFAIAHKFPAEEAMTTLLDIDVQVGRTGALTPVARLTPVFVGGVTVTN 359

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED I+            +D+R+GD V+V+RAG+VIP+V  +++  R  DA+ FS 
Sbjct: 360 ATLHNEDEIRR-----------KDVRIGDTVIVRRAGDVIPEVARVVLERRPSDARVFSM 408

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S VVR+ +       AA RCTGGL C AQ+ + L HF  R A NI+GLG + 
Sbjct: 409 PQACPVCGSHVVREED------AAAWRCTGGLFCPAQRKQALLHFAGRRAMNIDGLGDKL 462

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++    ++     +  PAD++ L      S  ++      G+ S  NL D+I   R  +L
Sbjct: 463 VEQLVDAQQ----VSTPADLYKLGMSGLVSLERM------GEKSALNLLDAIEASRKTTL 512

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+F+LGIR+VG   AR LA+++ +     Q           D   L +V  VG ++AQ
Sbjct: 513 ARFLFALGIRNVGETTARDLAQHFGALDAIMQA----------DAERLQQVRDVGPVVAQ 562

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEY 669
           ++V+F+    N+  +  L +                I   K  V TGTL  + R +A+E 
Sbjct: 563 SMVDFFAEAHNLAVIAQLREAGVHWDEHSPAPQEDRIYTGKTFVLTGTLASLSRQQAKER 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA VS  +S+KTD ++ G + GSKLE+A +LGV +++E +FL L++
Sbjct: 623 LEALGAKVSGSVSKKTDFVVAGSDSGSKLERAMELGVAVLSESEFLLLIE 672


>gi|312882689|ref|ZP_07742426.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369650|gb|EFP97165.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 670

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 393/713 (55%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E    +L+ L Q +  H   YY    P I DSEYD L R    +    P+L      
Sbjct: 1   MSKE-IETKLNHLRQLLHSHGIKYYVEDNPQIPDSEYDRLMRELLELESQHPELV---SL 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+       V H IP LSL+  ++ ++L  F  R+       D+N   F  E
Sbjct: 57  DSPTQRVGGKPLDGFESVQHEIPMLSLDNAFDDQELDAFQKRMQDRLG--DENIGLFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  +++ YE G  + AA RGDG +GE+++  +R I +IP  L   N P  IEVRGE
Sbjct: 115 PKLDGLAVSLLYENGVLIQAATRGDGATGENITENVRTIKSIPLQLQGSNWPARIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           V++ K  F  LN + +  G K + NPRNAA+G LR+L+     +R L+F+ + +G   E 
Sbjct: 175 VFMPKAGFDKLNQQALKKGEKVFVNPRNAAAGSLRQLDSKITASRPLSFYAYSVGVVEEG 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +   YE   ++   G P+     Q +    +  +Y ++ + R  L Y+IDG+V KVD 
Sbjct: 235 ELSSSHYERFIQLTRWGLPMCPETLQVDGLSAVKDFYQDILNRRDDLAYEIDGVVIKVDN 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++Q++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L+PV +GG  +
Sbjct: 295 VAVQERLGFVARAPRWAIAYKFPAQEEITVLNDVEFQVGRTGAITPVAKLKPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            + +GD V+++RAG+VIP++V +++  R    +P 
Sbjct: 355 SNATLHNADEIERL-----------GVMIGDEVVIRRAGDVIPQIVSVVLERRSDTTKPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           +FP  CP+C S + R          A  RCTGG  C AQ+ E LKHFVSR A +++GLG+
Sbjct: 404 TFPICCPVCHSEIERLDGE------AVARCTGGFVCQAQRKEALKHFVSRKALDVDGLGE 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L   Q +   ++      G  S  N+ D++   ++ 
Sbjct: 458 KVIEQLVDRE----LVSTPADLFKLSPHQLSVLERM------GPKSAKNVVDALEHSKST 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LAK++ +  N     ++ +          I V  +GDI+
Sbjct: 508 TLSRFLYSLGIREVGEATATNLAKHFKTLANITAAPHDAL----------IEVQDIGDIV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKA 666
           A+ I  F+   +N   ++ LL +        + + ++   ++ K +V TG+L ++ R  A
Sbjct: 558 AKHITAFFSQQQNQTVIDDLLSQGIEWSDIEDNHANTPQVLQGKVVVLTGSLSQLNRSDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +  LGA V+  +S+KTDI+  G+N GSKL KAQ LG++I  E+  + L++
Sbjct: 618 KEALESLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIRTEQDLVALIR 670


>gi|261253653|ref|ZP_05946226.1| DNA ligase [Vibrio orientalis CIP 102891]
 gi|260937044|gb|EEX93033.1| DNA ligase [Vibrio orientalis CIP 102891]
          Length = 669

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/708 (34%), Positives = 392/708 (55%), Gaps = 47/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +++L+ L + + YH   YY    P I D+EYD L R    +    P+L      + P 
Sbjct: 4   EIQEKLNQLRETLHYHGVKYYVEDNPEIPDAEYDRLMRDLMELESQHPELM---SIDSPS 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG        V H IP LSL+  ++  +L  F  R+         +   F  EPK+D
Sbjct: 61  QRVGGAPLDGFGSVKHEIPMLSLDNAFDDGELESFHKRMKDRIPSATFD--VFCCEPKLD 118

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  +++ YE G  V AA RGDG +GE+++  +R I  IP  L     P  IEVRGEV++ 
Sbjct: 119 GLAVSLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPARIEVRGEVFMP 178

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAK 252
           K  F  LN+  +  G K + NPRNAA+G LR+L+     TR L+F+ + +G       + 
Sbjct: 179 KAGFDKLNELALKKGDKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGAELSS 238

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             Y+   +++  G P+    +Q ++   + +YY ++   R +L Y+IDG+V KVD  +LQ
Sbjct: 239 SHYQRFLQLKGWGLPMCPETKQVSSLDDVKAYYQDILERRESLTYEIDGVVIKVDNIALQ 298

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NAT
Sbjct: 299 EQLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNAT 358

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L            + VGD V+++RAG+VIP++V ++   R  +A+   FP 
Sbjct: 359 LHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVSERRPENAREIVFPE 407

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C+S+V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG++ ++
Sbjct: 408 NCPVCKSQVERVEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIE 461

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     +  PAD+F L     T   ++      G  S  N+ D++NK +  +L R
Sbjct: 462 QLVDREM----VETPADLFKLSAGVITVLDRM------GPKSAQNVVDALNKSKETTLPR 511

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F++SLGIR VG   A +LA+++ +            A    +  +L+ V  +G+I+A  I
Sbjct: 512 FLYSLGIREVGEATAANLAQHFKTLD----------AVKIANHEALVEVQDIGEIVASHI 561

Query: 613 VEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + F+   +N+  ++ L+ +      +   +++    +  K +V TG+L ++ R  A+  +
Sbjct: 562 IAFFAQDKNLTVIDDLILQGVHWSDVEEKDESTPQPLAGKTVVLTGSLSQLTRSDAKAAL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  EE  + L+
Sbjct: 622 QNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIRTEEDLISLM 669


>gi|260219439|emb|CBA26284.1| DNA ligase [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 696

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/717 (36%), Positives = 388/717 (54%), Gaps = 56/717 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K L +L +E+      YY    P++ D EYD L R    +    P+      P+ P  ++
Sbjct: 20  KRLQALREELHRLGHAYYVLDAPLVPDVEYDRLFRELQDLEAQHPEWV---TPDSPTQRV 76

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKD-DNSIFFTLEPKID 135
           GG++  +   V H++P LS+    + E      F TR+ +  +  + D  + +  E K D
Sbjct: 77  GGQVLDAFTSVRHAVPMLSIRTETDTESTGALAFDTRVRKELELNEGDAPVEYVAELKFD 136

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + +RYE+G  V AA RGDG  GEDV+  IR I  IP  L   +P ++EVRGEVY+ +
Sbjct: 137 GLAMNLRYEQGVLVQAATRGDGEYGEDVTQNIRTIGQIPLRLPDGVPPVLEVRGEVYMRR 196

Query: 196 NDFLALNDEMIAV------GRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT-- 246
           +DF ALN+   A       G K + NPRNAA+G +R+L+P     R L+FF +GLG+   
Sbjct: 197 DDFEALNERQRARIAAGEKGEKTFVNPRNAAAGAVRQLDPGIAAQRPLSFFAYGLGEVTP 256

Query: 247 ---SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                      Y MLQ ++  GFPV   V  A     +++Y+  + + R +LP+DIDG+V
Sbjct: 257 AAEGGPDFGSHYAMLQTLKSWGFPVAAQVDTARGAPELIAYHQRIGAGRDSLPFDIDGVV 316

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV+  +LQ++LG   R PRW ++HK+  ++  T +L ID+Q+GRTG LTPVA+L PV +
Sbjct: 317 YKVNSLALQQRLGFVTREPRWAVAHKYPAQEQLTTVLAIDVQVGRTGKLTPVAKLAPVFV 376

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHNED  +            +D+RVGD V+V+RAG+VIP+VV ++  +R  
Sbjct: 377 GGVTVTNATLHNEDEARR-----------KDVRVGDTVIVRRAGDVIPEVVSVLPEKREG 425

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA  F+ P  CP+CQS  VR+         A +RCTGGL CSAQ+ + + HF  R A  +
Sbjct: 426 DAPQFTMPRICPVCQSAAVREEGE------ADYRCTGGLFCSAQRKQAILHFAQRRAVEV 479

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG + ++    +      IR   D++ L      S  ++       D S  N+ D++ 
Sbjct: 480 EGLGDKLVEQLVDAN----VIRNLPDLYRLGLSALASLDRMA------DKSAQNIVDALE 529

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +  +L RF+F LGIRHVG   A+ LA+++ +     +           D  +L+ V  
Sbjct: 530 KSKQTTLPRFLFGLGIRHVGEATAKELARHFGTLDAIMEA----------DEEALLAVSD 579

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           VG I+AQ+I  F+    N   VE L    V+   G         +  K LV TGTL  + 
Sbjct: 580 VGPIVAQSIRTFFDQAHNREVVEQLRACGVTWPEGAPADAGPKPLAGKTLVLTGTLPTLG 639

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R  A++ +   G  VS  +S+KT  ++ G   GSKL+KA +LGV +++E   L LL+
Sbjct: 640 RDAAKDLIEAAGGKVSGSVSKKTHFVVAGAEAGSKLDKANELGVPVLDEAGLLELLK 696


>gi|152974127|ref|YP_001373644.1| NAD-dependent DNA ligase LigA [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|190359228|sp|A7GKJ1|DNLJ_BACCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152022879|gb|ABS20649.1| DNA ligase, NAD-dependent [Bacillus cytotoxicus NVH 391-98]
          Length = 669

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/715 (33%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  ++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEAVQQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLETENPEFITE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGVNVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  + RGDG +GED++  ++ I  IP  L   +   +EVRGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGSTRGDGITGEDITQNLKTIKAIPLRLQEEV--TLEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G LR+L+P     R L+ FV+GL       
Sbjct: 173 YMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADIEGKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ITSHSEALDFLGELGFKTNPNRRICETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDDVT 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQERLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++ ++R    + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVVFDKRTGKEEAYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC    AC AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPTCDSGLVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F++      IR  AD++ L + Q     +      FG+ S +NL  +I   +  SL
Sbjct: 455 ITQLFEAN----YIRTFADLYGLTKDQLLQLDR------FGEKSASNLVQAIEASKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+LA+++ +  N  +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDNLVKAGEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++ N   +  ++           +       +N++S    K +V TG L+ + R +
Sbjct: 555 SIVTYFDNEDVLHLIQQFKDYGVNMTYKGIKRADLQNIASYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD++I G+  GSKL +A++  ++I NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVIAGEAAGSKLAQAEKHNIEIWNEERFLQELNK 669


>gi|15613212|ref|NP_241515.1| NAD-dependent DNA ligase LigA [Bacillus halodurans C-125]
 gi|15213980|sp|Q9KF37|DNLJ_BACHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|10173263|dbj|BAB04368.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+)) [Bacillus
           halodurans C-125]
          Length = 669

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/714 (34%), Positives = 385/714 (53%), Gaps = 54/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A +++  L  ++  +   YY   KP++ D+EYD L      +  AFP+L   +  
Sbjct: 1   MERNDAERKIEKLRNQLEEYGYHYYVLDKPLVSDAEYDGLMNELIELEEAFPEL---KSD 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++GG       KV H  P LSL   ++ +DLR F  R+ +       + + ++ E
Sbjct: 58  TSPSVRVGGPPLPHFEKVEHRTPMLSLGNAFSDQDLRDFDRRVRQVVG----DEVTYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G+FV  A RGDG +GED++  +R IP+IP  L   +   +EVRGE 
Sbjct: 114 LKIDGLAISLIYESGRFVRGATRGDGTTGEDITQNLRTIPSIPLRLKEAV--SLEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ K  F ALN+   A G + +ANPRNAA+G LR+L+P     R+L+ F++ +G      
Sbjct: 172 FMPKRSFEALNEAKEAAGEERFANPRNAAAGSLRQLDPKLAAKRHLDAFIYAIGSVEGKE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E L  ++ +GF +N       +   ++ Y N     R+ LPY+IDG+V KVD  +
Sbjct: 232 LHSHHEGLNYLKTIGFKINPESAYCESIDEVIDYVNSWLERRADLPYEIDGIVIKVDNVN 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++  T LLDI + +GRTG++TP A L+PV + G  +  
Sbjct: 292 FQEQLGYTAKSPRWAIAYKFPAEEVITTLLDITLNVGRTGVVTPTAELKPVTVAGTTVKR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++   R  + +PFS 
Sbjct: 352 ASLHNEDLIR-----------EKDIRLGDSVVVKKAGDIIPEVVNVLTELRTGEERPFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR A NI+GLG++ 
Sbjct: 401 PTHCPECGSELVRLEGE------VALRCINP-QCPAQIREGLIHFVSRQAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       I   AD++ L + +     ++      G+ SV NL  SI   +  SL
Sbjct: 454 ITQLFEH----GLIHNVADLYKLNKDELLQLERM------GEKSVNNLLASIETSKKSSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR VG++ A++LA ++ +     +            +  LI V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFVGSKAAKTLAMHFPTMTELRRA----------SYDELIAVNEIGEKMAA 553

Query: 611 AIVEFYQNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +IV +++ P     ++        +    P     E+   S    K +V TG LQ + R 
Sbjct: 554 SIVSYFEKPEVNELIDELASLGVNMTYNGPKPIGEEEIADSPFAGKTVVLTGKLQALTRG 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+E +  LG  V+  +S+ TD+++ G++ GSKL KA++L ++I +EE  +  +
Sbjct: 614 EAKEKIEALGGKVTGSVSKNTDLLVAGEDAGSKLTKAKELNIEIWDEEALVKAI 667


>gi|297544111|ref|YP_003676413.1| NAD-dependent DNA ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841886|gb|ADH60402.1| DNA ligase, NAD-dependent [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 662

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/707 (33%), Positives = 387/707 (54%), Gaps = 49/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+L   + P+ P  +
Sbjct: 4   KERIKELREKINYHNYKYYVLDQPEISDYEYDMLMRELIELEEKYPEL---KTPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +L+ F  R+           + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHIVPMLSLANAFSEGELKDFDRRVRE-----AVGDVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G F   + RGDG +GE+V+  ++ I +IP  L  N+   + VRGEV++ +  
Sbjct: 116 SVELIYENGIFTVGSTRGDGITGENVTPNLKTIKSIPLRLKDNV--SLVVRGEVFMPRAS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L +      K   E
Sbjct: 174 FERLNTEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQRVEGRKFKTHVE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++  GF V    ++ +    ++    E+++++  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLEFLKEQGFKVIPIHKKCSNIDEVIREIEEIRNLKDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKEPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V++++AGE+IP+VV++I  ER    + F  P  CP+
Sbjct: 354 DYIK-----------EKDIRIGDTVIIQKAGEIIPEVVEVIKEERTGQEREFVMPDRCPV 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR          A  RCT  + C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVRLPGE------AVRRCT-SVNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      I   AD++ L+        ++      GD SV NL ++I + +   L+R +F 
Sbjct: 456 N----GLIHNIADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++ +  +  +            +    ++P VG  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHFKTIDDIMKA----------KFEDFTKLPDVGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +N+  +E L K         ++ VSS  E K  V TG L    R +A   + + G  
Sbjct: 556 AEKQNVETIEKLKKAGVNMKKLSKEKVSSIFEGKTFVLTGALGNYTREEATRIIEERGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KTD ++VG +PGSKL+KAQ+LG++I++E+QF  +L+  N 
Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIEIIDEKQFEEMLKGENI 662


>gi|90410985|ref|ZP_01218999.1| DNA ligase [Photobacterium profundum 3TCK]
 gi|90328198|gb|EAS44509.1| DNA ligase [Photobacterium profundum 3TCK]
          Length = 697

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/710 (34%), Positives = 397/710 (55%), Gaps = 47/710 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +++L +L ++++YH   YY    P I D+EYD + ++  A+    P+L      + P 
Sbjct: 30  DIQQQLDTLREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEADHPELM---SVDSPS 86

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG    S  +V H +P LSL+  +N E+L  F  R+           + +  EPK+D
Sbjct: 87  QRVGGMPLDSFTQVKHELPMLSLDNAFNDEELHAFEKRLLDRL--ITAGQVSYCCEPKLD 144

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  +++ YE G  V AA RGDG +GE+++  +R I +IP  L     P  +EVRGEV++ 
Sbjct: 145 GLAVSLMYENGVLVQAATRGDGATGENITTNVRTIRSIPLKLQGEGWPLRLEVRGEVFMP 204

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAK 252
           K  F  LN   +  G K +ANPRNAA+G LR+L+      R L+F+ + +G    +  A 
Sbjct: 205 KKGFDELNARALKKGDKAFANPRNAAAGSLRQLDSKIAATRPLSFYAYSVGVVEGMDLAD 264

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            QY+ L +++  G P+   +RQ  T   +++YY ++   R +L Y+IDG+V KVD+   Q
Sbjct: 265 SQYDRLVQLKGWGIPMCPEIRQLKTIKDVIAYYQDIGERRQSLSYEIDGVVIKVDDVETQ 324

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEP+ +GG  ++NAT
Sbjct: 325 EQLGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPIFVGGVTVSNAT 384

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +  L            + +GD V+++RAG+VIP++V ++ + R  +A    FP 
Sbjct: 385 LHNADEVARL-----------GVMIGDTVIIRRAGDVIPQIVSVVESRRPANALSIIFPE 433

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C+S V R          A  RC+GGL C AQ+ E LKHFVSR A +++G G++ ++
Sbjct: 434 TCPVCKSNVERVEGE------AVARCSGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIE 487

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     +  PA +F L     T   ++      G  S   L DS+   +  +L R
Sbjct: 488 QLVDREM----VTTPAGLFKLSAGVVTVLDRM------GPKSAQKLVDSLANSKETTLPR 537

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI+SLGIR VG   A +LA ++ + +          A        L+ VP VG+++A  +
Sbjct: 538 FIYSLGIREVGEATAANLANHFETLE----------AITAASKEQLLVVPDVGEVVANNL 587

Query: 613 VEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + F++   N+  VE L+      P+I + E+ V   ++ K +V TG+L ++ R  A+  +
Sbjct: 588 LNFFREAHNMDVVEDLIAVGIHWPAIEKPEEGVELPLDGKVVVLTGSLSQLTRSDAKAAL 647

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             LGA V+  +S+KTD+++ G+  GSKL KAQ+L ++I +E+  + L+ +
Sbjct: 648 QALGAKVTGSVSKKTDLLVAGEAAGSKLTKAQELDIEIWDEQALVDLMNR 697


>gi|89097084|ref|ZP_01169975.1| DNA ligase [Bacillus sp. NRRL B-14911]
 gi|89088464|gb|EAR67574.1| DNA ligase [Bacillus sp. NRRL B-14911]
          Length = 668

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/714 (35%), Positives = 387/714 (54%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + ++ A   +  L   ++ +   YY   KP + DSEYD L +    + +  P L  +   
Sbjct: 1   MDLQNAEARVKELHNLLNQYGYEYYVLDKPSVPDSEYDRLLKELMELENEHPQLKTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE+     KV H  P LSL   +N EDLR F  R+     +    ++ +  E
Sbjct: 58  DSPTQRVGGEILDMFEKVEHQTPMLSLGNAFNEEDLRSFDRRVR----QTAGENLSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + ++YE G F+  A RGDG  GED++  +R I +IP  LS   P  IEVRGE 
Sbjct: 114 LKIDGLAVALKYEDGLFIQGATRGDGTIGEDITVNLRTIRSIPLRLSE--PVSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++    F ALN      G +P+ANPRNAA+G LR+L+P     R L+ F++G+  T +  
Sbjct: 172 FMPGRSFEALNKGKEERGEEPFANPRNAAAGSLRQLDPRIAASRNLDIFLYGISNTGDTG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     L  +  LGF  N   R+  +   ++ Y +     R  L YDIDG+V KVD  +
Sbjct: 232 VESHSAGLDYLETLGFKTNKERRKCASIEEVIEYVSSWTEKRPNLDYDIDGIVIKVDSLA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  A+SPRW I++KF  ++  T L DI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 LQEELGATAKSPRWAIAYKFPAEEVVTTLRDIELSVGRTGVVTPTALLEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DI++GD+V+VK+AG++IP+VV+++  +R  + + F  
Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDKVVVKKAGDIIPEVVNVLAEQRTGEEREFIM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECGSELVRLEGE------VALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F  E     I+  AD++ L         ++      G+ SV NL  +I   +  SL
Sbjct: 454 VSQLFAKE----LIKDVADLYKLTHEALIGMERM------GEKSVNNLVQAIEASKQNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVGA+ A++LA+++ S  N       ++A + DD  +   +  +G  +A 
Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQHFSSMDN-------LMAASEDDLTA---INEIGGKMAG 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           AIV F++       +  L +       +  K V++E        K +V TG L  + R++
Sbjct: 554 AIVAFFEQEEAKELIRELKESGVNMEYKGPKPVAAEDSDSFFAGKTIVLTGKLSILSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  VS  +S+KTD++I G++ GSKL KAQ LG+ I NEEQ +  L 
Sbjct: 614 AKEKIEALGGNVSGSVSKKTDLLIAGEDAGSKLAKAQDLGIDIWNEEQLVEELN 667


>gi|15640987|ref|NP_230618.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|153822692|ref|ZP_01975359.1| DNA ligase [Vibrio cholerae B33]
 gi|229510900|ref|ZP_04400379.1| DNA ligase [Vibrio cholerae B33]
 gi|229518021|ref|ZP_04407465.1| DNA ligase [Vibrio cholerae RC9]
 gi|229608449|ref|YP_002879097.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MJ-1236]
 gi|254291846|ref|ZP_04962629.1| DNA ligase [Vibrio cholerae AM-19226]
 gi|254848101|ref|ZP_05237451.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10]
 gi|255744753|ref|ZP_05418704.1| DNA ligase [Vibrio cholera CIRS 101]
 gi|262151242|ref|ZP_06028378.1| DNA ligase [Vibrio cholerae INDRE 91/1]
 gi|81545212|sp|Q9KTD1|DNLJ_VIBCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|9655431|gb|AAF94133.1| DNA ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126519773|gb|EAZ76996.1| DNA ligase [Vibrio cholerae B33]
 gi|150422206|gb|EDN14170.1| DNA ligase [Vibrio cholerae AM-19226]
 gi|229344736|gb|EEO09710.1| DNA ligase [Vibrio cholerae RC9]
 gi|229350865|gb|EEO15806.1| DNA ligase [Vibrio cholerae B33]
 gi|229371104|gb|ACQ61527.1| DNA ligase [Vibrio cholerae MJ-1236]
 gi|254843806|gb|EET22220.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10]
 gi|255737784|gb|EET93178.1| DNA ligase [Vibrio cholera CIRS 101]
 gi|262030933|gb|EEY49561.1| DNA ligase [Vibrio cholerae INDRE 91/1]
          Length = 669

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         +   F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHS--AFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TD++  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|183179445|ref|ZP_02957656.1| DNA ligase [Vibrio cholerae MZO-3]
 gi|183012856|gb|EDT88156.1| DNA ligase [Vibrio cholerae MZO-3]
          Length = 669

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         +   F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHS--AFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|161831535|ref|YP_001596473.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331]
 gi|190359249|sp|A9NC33|DNLJ_COXBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161763402|gb|ABX79044.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331]
          Length = 670

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/709 (34%), Positives = 386/709 (54%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L  EI+ H+  YY  S+P I DS YD L    + +   +P+      P+ 
Sbjct: 4   PAKIQKRIERLRHEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPETI---TPSS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +  +   D    +  EPK
Sbjct: 61  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKL--DKPFEYVCEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 119 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G      F
Sbjct: 179 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 239 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++N
Sbjct: 299 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 359 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 408 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFSSRRALDIEGLGDKL 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++   T+          G+ S  NL  +I K +  +L
Sbjct: 462 VELFIQEK----LIKDITGIYQLKKSAITAL------PRMGEKSAENLLTAIEKSKKTTL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   AR+LA+++       +              +L  +  +G + A+
Sbjct: 512 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVAAE 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L   +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 562 NIHAFFHQKNNAELINKL-IHLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 621 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669


>gi|30249713|ref|NP_841783.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
 gi|75540341|sp|Q82TW6|DNLJ_NITEU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|30180750|emb|CAD85664.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
          Length = 681

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/722 (35%), Positives = 384/722 (53%), Gaps = 52/722 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S     + L +L   I+ HD  YY    P+I D+EYDAL R    +   +P L     P
Sbjct: 2   ISENTIEERLQALRAAIALHDFHYYVQDAPVIPDAEYDALFRTLQQLEQQYPHLV---TP 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G        ++TH  P LSL   ++ E++  F  RI         + + + +E
Sbjct: 59  DSPTQRVGAPPLKVFAQLTHQTPMLSLANAFSEEEVTAFDRRIREALN---IDRVDYAVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGE 190
           PK DG  I++ Y  G     A RGDG++GED++  +R IP+IP  L +  P    EVRGE
Sbjct: 116 PKFDGLAISLIYANGILTKGATRGDGYTGEDITLNLRTIPSIPLRLQVPFPTGQFEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK--TS 247
           V + K DF  LN++    G K + NPRNAA+G LR+L+      R L FF +G+G     
Sbjct: 176 VVMLKTDFERLNEQQRKNGEKTFVNPRNAAAGSLRQLDSRITAMRRLTFFAYGIGAYHED 235

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +       E+L  +    F V          +G+++YY EM ++R +LPY+IDG+VYKV+
Sbjct: 236 QPIFSTHSEILAYLATQQFLVARQSSTVMGANGLLAYYREMNAVRLSLPYEIDGVVYKVN 295

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q++LG  +R+PR+ I+HKF  ++ ST LL I+IQ+GRTG LTPVARL PV +GG  
Sbjct: 296 DLAQQEKLGYVSRAPRFAIAHKFPAQEVSTELLAIEIQVGRTGALTPVARLAPVFVGGVT 355

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHNED ++            + I +GD V+V+RAG+VIP+VV +IV  R   AQ 
Sbjct: 356 VTNATLHNEDEVQR-----------KQIMIGDTVIVRRAGDVIPEVVAVIVERRPTHAQA 404

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP+C S+ VR  +       A  RCTGGL C AQ+ + + HF SR A +I+GLG
Sbjct: 405 FVMPDHCPVCGSKAVRLPDE------AVTRCTGGLYCPAQRKQAILHFASRRAIDIDGLG 458

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +D     E     +  PAD++ L         ++         S  NL  +I   + 
Sbjct: 459 EKLVDQLIDRE----LVHTPADLYRLDIDTLAGLERMAG------KSARNLVTAIEDSKK 508

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RFI++LGIRHVG   A++LA +                    +   L ++P +G I
Sbjct: 509 TTLPRFIYALGIRHVGEATAKALASHTGDLDRLMDM----------NAEQLQQIPDIGPI 558

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           +AQ+I +F+    N   +E LL           I +     +  +  K  V TGTL  + 
Sbjct: 559 VAQSIADFFSEAHNREVIEQLLSCGLQWEKPSHIAQPSSRTNLAVPGKTFVLTGTLPTMT 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A+  + Q G  V+  +S  T  ++ G +PGSK  +A +LG+ +++E+Q L LL+  +
Sbjct: 619 RDQAKNRIEQQGGKVTGSVSSATSYVVAGSDPGSKYARAIELGIPVLDEDQLLSLLRDTS 678

Query: 723 TT 724
           ++
Sbjct: 679 SS 680


>gi|90416525|ref|ZP_01224456.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207]
 gi|90331724|gb|EAS46952.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207]
          Length = 677

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/713 (37%), Positives = 394/713 (55%), Gaps = 44/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ R E   L+ E++ H+  YY   +P I DSEYD   RR   I    P+L      + 
Sbjct: 5   LEQVRAEYEQLKDELNQHNHRYYVLDEPTIPDSEYDRSMRRLQDIEQQHPELL---SDDS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    S  +V+H++P LSL+  ++ E+L  F  RI      KDD  I +  EPK
Sbjct: 62  PSQRVGGAALPSFSQVSHAVPMLSLDNAFSEEELEAFDRRISDRLNYKDDQQIDYVCEPK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ Y +G  V  A RGDG  GED++A +R I +IP  L    IPE++EVRGE+Y
Sbjct: 122 LDGVAVSLLYNQGLLVRGATRGDGKVGEDITANVRTINSIPLRLNGDGIPELLEVRGEIY 181

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N   IA G KP+ NPRNAA+G LR+L+     +R L    + +G+      
Sbjct: 182 LPRGGFDKINAAAIAKGDKPFVNPRNAAAGSLRQLDSKITASRPLEMCAYSVGQFQGGET 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                 ML+ +   GF +N  V          +YY  M+  R  LPYDIDG+VYKV++  
Sbjct: 242 PDSHLNMLKALGSWGFKINTYVEAVQGIAACEAYYERMQKRRDQLPYDIDGIVYKVNDLG 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  A++PRW I+ KF  ++  T+L+D++ Q+GRTG LTPVARL PV +GG  ++N
Sbjct: 302 LQQRLGFVAKAPRWAIARKFPAQEEMTQLVDVEFQVGRTGALTPVARLAPVFVGGVTVSN 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            + +GD V+++RAG+VIPKV  ++++ R  +AQP  F
Sbjct: 362 ATLHNGDEIARL-----------GLCIGDTVIIRRAGDVIPKVAAVVLDRRPENAQPIVF 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+CQS V R          A  RC+GGL C AQ  E +KHF SR A +I+GLG + 
Sbjct: 411 PENCPVCQSSVRRVEGE------AVARCSGGLFCGAQSKEAIKHFASRKAMDIDGLGDKL 464

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           I  PAD++ L      S TKI ++   G+ S  NL DSI   R  +L
Sbjct: 465 VELLVDR----GLIYSPADLYEL------SATKIADLERMGEKSAQNLIDSIAVSRQTTL 514

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+F+LGIR VG    ++LA+ + S +          A    +  +L+ V  +G ++A 
Sbjct: 515 AKFLFALGIREVGEATGQTLARNFGSLE----------AIIEAEQDALLEVDDIGPVVAY 564

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEY 669
            I +F++NP N+  + AL +              S  ++ +  V TG ++ + R +A++ 
Sbjct: 565 YIRDFFRNPDNLSIINALRESGVSWDDIDITAQDSQPLKGQTWVLTGGMEIMSRAEAKDR 624

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + +LGA V+  +S KT  ++ G   GSKL KAQ L + + +EEQFL  L+ + 
Sbjct: 625 LQELGAKVAGSVSAKTSQVVAGPGAGSKLTKAQSLDIPVFDEEQFLAFLEGHK 677


>gi|20807100|ref|NP_622271.1| NAD-dependent DNA ligase [Thermoanaerobacter tengcongensis MB4]
 gi|81482513|sp|Q8RC42|DNLJ_THETN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|20515592|gb|AAM23875.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 666

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 385/709 (54%), Gaps = 49/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+ARK +  L ++I+YH+  YY   +P I D EYD L R    +   +P+    + P
Sbjct: 1   MDREEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---KTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE        TH +P LSL   +  E++++F  R+           + + +E
Sbjct: 58  DSPSQRVGGEPLDEFEPFTHIVPMLSLANAFTAEEIKEFDRRVKE-----AVGEVEYVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  + + YE G F   + RGDG  GE+V+  ++ I +IP  L  ++   + VRGEV
Sbjct: 113 PKIDGLSVELVYENGMFTVGSTRGDGIVGENVTPNLKTIKSIPLRLKDSV--NLVVRGEV 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ K  F  LN+E    G   +ANPRNAA+G +R+L+P     R L+ F+  L +     
Sbjct: 171 FMPKASFAKLNEERAERGESLFANPRNAAAGSVRQLDPKVTAKRDLDIFIFNLQRIEGRD 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E L+ ++  GF V   +++  T   ++    E+  ++ +LPYDIDG V KV+E  
Sbjct: 231 FKTHVEALEFLKEQGFKVIPLIKKCTTIEEVIKAIEELGEMKDSLPYDIDGAVIKVNELD 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG+ A+  RW I+ K+  +   T+++DI +Q+GRTG LTP A LEPV I G++++ 
Sbjct: 291 KREILGQTAKDYRWAIAFKYPAEMKKTKIVDIVVQVGRTGALTPTAVLEPVVISGSVVSR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYIK            +DIR+GD VLV +AG +IP+VV+++  ER  D + F  
Sbjct: 351 ATLHNEDYIK-----------EKDIRIGDTVLVHKAGGIIPEVVEVVKEERTGDEKAFVM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C +  VR          A  RCTG L C AQ   R+ HF S+DA +IEGLG   
Sbjct: 400 PDKCPECGALAVRLPGE------AVRRCTG-LNCPAQIARRIIHFASKDAMDIEGLGPAI 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            I+  AD++ L+ R   +  ++      GD S  NL ++I K +   L
Sbjct: 453 ISQLLSK----GLIQNVADLYYLKYRDLITLERM------GDKSARNLLEAIEKSKKRDL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R +F LGI  +G++ A+ +A+++ S  N  +            +   + +P +G  +A+
Sbjct: 503 DRLLFGLGINLIGSKAAQVIAEHFKSMDNIMKA----------KYEDFLELPDIGPKMAR 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +IV F+   +N   VE L +            VS+  E K  V TG L+   R +A   +
Sbjct: 553 SIVTFFSEEQNRRVVERLKEAGVNMEKLSTGKVSNIFEGKIFVLTGALKNYTRDEAARLI 612

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G  V+  +S+KTD +IVG +PGSKL+KAQ+LGVKI+NEEQF  +L+
Sbjct: 613 VERGGKVTNSVSKKTDYLIVGADPGSKLKKAQELGVKIINEEQFEAMLK 661


>gi|153826197|ref|ZP_01978864.1| DNA ligase [Vibrio cholerae MZO-2]
 gi|149740057|gb|EDM54226.1| DNA ligase [Vibrio cholerae MZO-2]
          Length = 669

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 387/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         +   F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHS--AFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPSQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLLAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|92112835|ref|YP_572763.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043]
 gi|122990589|sp|Q1QZP4|DNLJ_CHRSD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91795925|gb|ABE58064.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043]
          Length = 691

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/714 (34%), Positives = 387/714 (54%), Gaps = 44/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            +  R+   +L Q++   +  YY    P I D+EYDAL R   ++    P+L   + P+ 
Sbjct: 5   PQAVRERADTLHQQLDDANYQYYVEDDPRITDAEYDALLRELQSLEAEHPEL---KTPDS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +VTH++P LSL+  ++  +L  F+ R+    +  D +++ F  EPK
Sbjct: 62  PTQRVGAAPAERFEEVTHAVPMLSLDNAFDDAELAAFVKRVADKLEC-DGDTLAFCCEPK 120

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YE G+ V  A RGDG +GEDV+  +R I +IP  L  + IP +IEVRGEVY
Sbjct: 121 LDGLAVALVYENGRLVQGATRGDGRTGEDVTLNLRTIRSIPLKLRGDSIPPLIEVRGEVY 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIF 250
           +  + F ALND     G K +ANPRNAA+G LR+L+ +    R L F  + + +   E  
Sbjct: 181 MRHSGFEALNDRARENGDKVFANPRNAAAGSLRQLDSSIAAARPLEFCAYQVARLEGEDD 240

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A    + L+++R LGF  +  +       G++ + + +   R+ L YDIDG V KVD   
Sbjct: 241 AHSHSDYLKRLRTLGFRTSPLLDVVKGERGVIDFCHRLGEQRNGLDYDIDGAVIKVDSLR 300

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +R+PRW I++K+  ++ +T L D+  Q+GR G LTPVA+LEPV + G  + N
Sbjct: 301 DQRELGFVSRAPRWAIAYKYPAQEQTTTLNDVVFQVGRVGTLTPVAKLEPVQVAGVTVAN 360

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP++V ++ ++R    +    
Sbjct: 361 ATLHNMDEIERL-----------GVRIGDTVIVRRAGDVIPQIVGVVESQRPATTRAIEM 409

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S+  R           A RC+GGL C AQ+ E LKHF SR A +I+GLG++ 
Sbjct: 410 PEHCPVCGSQTERLEGE------VAARCSGGLFCPAQRKEALKHFASRRALDIDGLGEKL 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+F L+        ++  +    + S  NL +++   +  +L
Sbjct: 464 IDLLVERE----WVKTPADLFRLEA------ERLAELPRLAEKSANNLVNALEAAKRTTL 513

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI+++GIR VG   A SLA+++ S Q  ++     +            V  VG ++A+
Sbjct: 514 ARFIYAIGIREVGEATAASLARHFGSLQALSEASLEALEA----------VEDVGPVVAR 563

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F++ P N   +E L                  +  +  V TGTL+ + R   +  +
Sbjct: 564 HIHTFFRQPHNQETLEDLQGVGVTWEEVEIAGRPQPLAGQTWVLTGTLESMTRDDGKARL 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             LGA VS  +S+KT  ++ G+  GSKLEKAQ LGV++++E +FL  L  + + 
Sbjct: 624 QALGAKVSGSVSKKTAGVVAGEAAGSKLEKAQNLGVEVIDEREFLQRLAHWESA 677


>gi|54308062|ref|YP_129082.1| NAD-dependent DNA ligase LigA [Photobacterium profundum SS9]
 gi|81615410|sp|Q6LTU5|DNLJ_PHOPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46912488|emb|CAG19280.1| putative NAD-dependent DNA ligase [Photobacterium profundum SS9]
          Length = 676

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/710 (34%), Positives = 399/710 (56%), Gaps = 47/710 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +++L +L ++++YH   YY    P I D+EYD + ++  A+    P+L      + P 
Sbjct: 9   DIQQQLDTLREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEAEHPELM---SVDSPS 65

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG    S  +V H +P LSL+  +N E+L  F  R+           + +  EPK+D
Sbjct: 66  QRVGGTPLDSFTQVKHELPMLSLDNAFNDEELNAFEKRLLDRLITAGH--VSYCCEPKLD 123

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  +++ YE G  V AA RGDG +GE+++  +R I +IP  L     P  +EVRGEV++ 
Sbjct: 124 GLAVSLMYENGVLVQAASRGDGATGENITTNVRTIRSIPLKLQGEGWPVRLEVRGEVFMP 183

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAK 252
           K  F  LN   +  G K +ANPRNAA+G LR+L+      R L+F+ + +G    +  A+
Sbjct: 184 KKGFDELNARALKKGDKAFANPRNAAAGSLRQLDSKIAATRPLSFYAYSVGVVEGMDLAE 243

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            QYE L +++  G P+   +RQ  T + +++YY ++   R +L Y+IDG+V KVD+   Q
Sbjct: 244 SQYERLVQLKGWGIPMCPEIRQLKTINDVIAYYQDIGERRQSLAYEIDGVVIKVDDVETQ 303

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEP+ +GG  ++NAT
Sbjct: 304 EQLGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPIFVGGVTVSNAT 363

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +  L            + +GD V+++RAG+VIP++V ++ + R  +AQ  +FP 
Sbjct: 364 LHNADEVARL-----------GVMIGDTVIIRRAGDVIPQIVSVVESRRPDNAQAITFPI 412

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C+S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G G++ ++
Sbjct: 413 TCPVCESNVERVEGE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIE 466

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     +  PA +F L     T   ++      G  S   L DS+   +  +L R
Sbjct: 467 QLVDREM----VTTPAGLFKLSAGIVTVLDRM------GPKSAQKLVDSLANSKETTLPR 516

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI+SLGIR VG   A +LA ++ + +          A        L+ VP VG+++A  +
Sbjct: 517 FIYSLGIREVGEATAANLANHFETLE----------AITAASKEQLLVVPDVGEVVANNL 566

Query: 613 VEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + F++   N+  VE L+      P+I + E+ V   ++ K +V TG+L ++ R  A+  +
Sbjct: 567 LNFFREAHNMDVVEDLIAVGIHWPAIDKPEEGVELPLDGKVVVLTGSLSQLTRSDAKAAL 626

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             LGA V+  +S KTD+++ G+  GSKL KAQ+L ++I +E+  +  + +
Sbjct: 627 QALGAKVTGSVSSKTDLLVAGEAAGSKLTKAQELDIEIWDEQALVDFMNR 676


>gi|260363295|ref|ZP_05776162.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
 gi|308113593|gb|EFO51133.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
          Length = 655

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/697 (35%), Positives = 385/697 (55%), Gaps = 47/697 (6%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + YH   YY    P I D+EYD L R    I    PDL      + P  ++GG+      
Sbjct: 1   MHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTV---DSPSQRVGGKPLSEFS 57

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           +VTH +P LSL+  ++  +L  F  R         ++   +  EPK+DG  +++ YE G 
Sbjct: 58  QVTHEVPMLSLDNAFDDSELDSFHKRAQDRIG--GESIKQYCCEPKLDGLAVSLLYENGI 115

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMI 206
            V AA RGDG +GE+++  +R I  IP  L   + P  +EVRGEV++ K  F  LN+   
Sbjct: 116 LVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFMPKAGFEKLNELAR 175

Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCL 264
             G K + NPRNAA+G LR+L+     +R L+F+ + +G       A   YE   +++  
Sbjct: 176 QKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLAASHYERFLQIKSW 235

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G P+    ++ ++   + +YY  +   R  LPY+IDG+V K+D+ ++Q++LG  AR+PRW
Sbjct: 236 GLPMCPETKRVDSLADVKTYYQHILQRRDALPYEIDGVVIKIDDIAVQERLGFVARAPRW 295

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NATLHN D I+ L  
Sbjct: 296 AIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERLQ- 354

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                     +++GD+V+++RAG+VIP+VV +I   R   A+   FP+ CP+C S V R 
Sbjct: 355 ----------VKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERI 404

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                    A  RCTGGL C AQ+ + LKHFVSR A +++GLG + ++     E     +
Sbjct: 405 EGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREM----V 454

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
             PAD+F L     T   ++      G  S  N+ +++ K +  +L RF++SLGIR VG 
Sbjct: 455 ETPADLFKLSAGVLTVLERM------GPKSAQNIVNALEKSKLTTLPRFLYSLGIREVGE 508

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A +LA+++ S +                   LI V  +G ++A+ I  F++  +N   
Sbjct: 509 ATAANLAQHFKSLEAIQAATEE----------QLIAVQDIGVVVAKHITTFFEEEQNQAV 558

Query: 625 VEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
           V+ LL +    P +   E+     +E K +V TGTL ++ R +A+E +  LGA V+  +S
Sbjct: 559 VQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKEALQSLGAKVTGSVS 618

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 619 KKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELIN 655


>gi|256959858|ref|ZP_05564029.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96]
 gi|293385046|ref|ZP_06630880.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712]
 gi|293389317|ref|ZP_06633778.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613]
 gi|312906035|ref|ZP_07765048.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512]
 gi|312909381|ref|ZP_07768237.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516]
 gi|256950354|gb|EEU66986.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96]
 gi|291077724|gb|EFE15088.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712]
 gi|291081339|gb|EFE18302.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613]
 gi|310628030|gb|EFQ11313.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512]
 gi|311290405|gb|EFQ68961.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516]
          Length = 676

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/716 (34%), Positives = 392/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+II
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRATAEEI----------VALDSIGEII 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|297538570|ref|YP_003674339.1| DNA ligase, NAD-dependent [Methylotenera sp. 301]
 gi|297257917|gb|ADI29762.1| DNA ligase, NAD-dependent [Methylotenera sp. 301]
          Length = 682

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/704 (36%), Positives = 387/704 (54%), Gaps = 47/704 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
               L Q I+ +D  YY    P + DSEYD + R    I    P+L     P+ P  ++ 
Sbjct: 22  RCQQLRQLIAQYDHEYYVLDAPSVPDSEYDLVYRDLQDIERQHPNLI---TPDSPTQRVS 78

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G    +   +TH    LSL   +   +L  F  R+     +     + + +EPK DG  I
Sbjct: 79  GSAANAFNSITHRQAMLSLNNAFEDSELEAFDKRVREALGQ---EQVEYAVEPKFDGLAI 135

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDF 198
           T+ YE G F   A RGDG++GEDV+  +R + +IP  L+  N P+++EVRGEV + K DF
Sbjct: 136 TLTYENGIFTQGATRGDGYTGEDVTHNLRTVRSIPMRLNCENAPKLLEVRGEVLMFKRDF 195

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA-KGQYE 256
             LN   +A G K +ANPRNAA+G LR+L+     TR L+FF +GLG      A      
Sbjct: 196 EKLNQAQLAKGEKLFANPRNAAAGSLRQLDAKITATRPLSFFAYGLGVADGAPALGSHSM 255

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +  +  L FPV+   +      G+  YY ++  +R+ LP+DIDG+VYKV++F+ Q +LG
Sbjct: 256 AMDYLANLYFPVSEVRQLVMGVTGLRDYYQKIGQLRNELPFDIDGVVYKVNQFNQQNELG 315

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+HKF  ++A T + DI++Q+GRTG +TPVARL PV +GG  +TNATLHNE
Sbjct: 316 FVSRAPRWAIAHKFPAQEALTVVEDINVQVGRTGAITPVARLAPVFVGGVTVTNATLHNE 375

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++            +D+ +GD V V+RAG+VIP+VV +++  R  DA+ F  P+ CP 
Sbjct: 376 DEVRR-----------KDVHIGDTVSVRRAGDVIPEVVSVVLERRLADARRFEMPTACPE 424

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +++  +       A  RCTGGL C AQ+ + + HF SR A +IEGLG++ +D   +
Sbjct: 425 CGSHILKQADE------AVARCTGGLFCPAQRKQAITHFASRRAMDIEGLGEKLVDQLVE 478

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      +   ADI+ L      +   + N+      S  N+ D+++  +  +L RFI++
Sbjct: 479 AN----LVHTLADIYQL------NLETLSNLDRMATKSAQNILDALDHSKITTLARFIYA 528

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG+R+VG   A+ LAK++ +     Q           D  SL+ V  VG ++A++I  F 
Sbjct: 529 LGMRNVGEATAKDLAKHFGNLSALMQA----------DAASLLTVNDVGPVVAESISNFL 578

Query: 617 QNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
               N   + AL    +S      ++  +  +  K  V TGTL  + R  A+E +  +G 
Sbjct: 579 GEQHNQDVIRALQHAGISWPETEGKQLATGHLLGKSFVLTGTLPTLSRDAAKEMIEAVGG 638

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            VS  +S+KTD ++ G + GSKL+KAQ+LG+ I++E   L LL 
Sbjct: 639 KVSGSVSKKTDFVVAGSDAGSKLDKAQELGLVILDEAGLLALLA 682


>gi|229523238|ref|ZP_04412645.1| DNA ligase [Vibrio cholerae TM 11079-80]
 gi|229339601|gb|EEO04616.1| DNA ligase [Vibrio cholerae TM 11079-80]
          Length = 669

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         +   F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHS--AFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ Y+ G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYQNGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLVYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|227517688|ref|ZP_03947737.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104]
 gi|257083650|ref|ZP_05578011.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1]
 gi|227074843|gb|EEI12806.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104]
 gi|256991680|gb|EEU78982.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1]
 gi|315146961|gb|EFT90977.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4244]
          Length = 676

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 391/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|167039197|ref|YP_001662182.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X514]
 gi|256752857|ref|ZP_05493696.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913208|ref|ZP_07130525.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561]
 gi|307723778|ref|YP_003903529.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X513]
 gi|254781440|sp|B0K3S1|DNLJ_THEPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166853437|gb|ABY91846.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X514]
 gi|256748259|gb|EEU61324.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889893|gb|EFK85038.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561]
 gi|307580839|gb|ADN54238.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X513]
          Length = 662

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/707 (34%), Positives = 386/707 (54%), Gaps = 49/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+L   + P+ P  +
Sbjct: 4   KERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEL---KTPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +LR F  R+           + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVRE-----AVGDVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YEKG F   + RGDG  GE+V+  ++ I +IP  L  ++   + VRGEV++ +  
Sbjct: 116 SVELIYEKGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDV--SLVVRGEVFMPRAS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L K      K   E
Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +   GF +    ++ +    ++    E++++R  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLEFLNEQGFKIIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V+V++AGE+IP+VV+++  ER    + F  P  CP 
Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR L        A  RCTG L C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVRLLGE------AIRRCTG-LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++ L+        ++      GD SV NL ++I + +   L+R +F 
Sbjct: 456 K----GLIHNIADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++ +  N  +            +    ++P +G  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHFKTMDNIMKA----------KFEDFTQLPDIGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +N+  +E L           +  VS+  E K  V TG L+   R +A   + + G  
Sbjct: 556 AEKQNVEIIEKLKNAGVNMKKLSKGKVSNIFEGKTFVLTGALESYTREEATRMIEERGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KTD ++VG +PGSKL+KAQ+LG+KI++E+QF  +L+  N 
Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGENI 662


>gi|260912664|ref|ZP_05919150.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260633042|gb|EEX51207.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 673

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/706 (35%), Positives = 395/706 (55%), Gaps = 45/706 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  + E+  L + +  ++  Y+    P + D+EYD L  +   +   +P        + P
Sbjct: 3   EPIQFEMEQLRKTLRRYEYQYHVLDNPTVPDAEYDRLFHQLKKLEREYPQFITE---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G +      +VTH IP LSL+ +++ ++ + F+ RI           + F  EPK+
Sbjct: 60  TQRVGAKPLSGFAQVTHEIPMLSLDNVFSDDEFKAFVKRIQDRLLVLP-KQLTFCCEPKL 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  ++I Y  GK V AA RGDG +GED+++ IR I  IP ++L  N P  +EVRGEV++
Sbjct: 119 DGLAVSILYVDGKLVQAATRGDGTTGEDITSNIRTIRNIPLQLLMDNPPGRLEVRGEVFM 178

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FA 251
            +  F ALN++ +  G K +ANPRNAA+G LR+L+P   + R L    + +G    +   
Sbjct: 179 PQAGFEALNEQALIKGEKTFANPRNAAAGSLRQLDPKITSQRPLVLNAYSIGIAEGVELP 238

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +E LQ ++ +G PVNN ++  +    ++ +Y  +   RS L YDIDG V K++E +L
Sbjct: 239 VTHFERLQWLKSIGIPVNNEIQLCDGIENVLDFYRTIMKKRSDLGYDIDGTVLKINEIAL 298

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L PV + G  ++NA
Sbjct: 299 QQELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLAPVFVAGVTVSNA 358

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           D+ +GD V+++RAG+VIP+++ ++  +R  DA+   FP
Sbjct: 359 TLHNGDEIARL-----------DVAIGDTVIIRRAGDVIPQIIGVVHEKRPADAKKIEFP 407

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + +
Sbjct: 408 SNCPVCDSIIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGAKLI 461

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     I  PAD+F L        T +  +   G  S  N  DS+ K +  +L 
Sbjct: 462 EQLVDREQ----IHTPADLFKL------DLTTLMRLERMGPKSAQNALDSLEKAKKTTLA 511

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIR VG   A +LA Y+ +          + A        L +V  VG+++A  
Sbjct: 512 RFIFALGIREVGEATALNLANYFKT----------LTALKEATLEQLQQVQDVGEVVANR 561

Query: 612 IVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I  F++ P N+  V+  L + +        +   +  + K +V TGTL ++ R +A+  +
Sbjct: 562 IFVFWREPHNVEVVDDLLAQGIHWDAVEITEANDNPFKEKTIVLTGTLTQMGRTEAKALL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +LGA VS  +S KTD++I G++ GSKL KA +L V++++E+ FL 
Sbjct: 622 QRLGAKVSGSVSAKTDLVIAGESAGSKLTKANELNVQVIDEQTFLD 667


>gi|255973805|ref|ZP_05424391.1| NAD-dependent DNA ligase [Enterococcus faecalis T2]
 gi|256964440|ref|ZP_05568611.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704]
 gi|257080988|ref|ZP_05575349.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol]
 gi|307272536|ref|ZP_07553789.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855]
 gi|307284516|ref|ZP_07564678.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860]
 gi|255966677|gb|EET97299.1| NAD-dependent DNA ligase [Enterococcus faecalis T2]
 gi|256954936|gb|EEU71568.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704]
 gi|256989018|gb|EEU76320.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol]
 gi|306503193|gb|EFM72447.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860]
 gi|306510821|gb|EFM79838.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855]
 gi|315151576|gb|EFT95592.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0012]
 gi|315170712|gb|EFU14729.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1342]
 gi|327534312|gb|AEA93146.1| NAD-dependent DNA ligase LigA [Enterococcus faecalis OG1RF]
          Length = 676

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 391/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|288941063|ref|YP_003443303.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
 gi|288896435|gb|ADC62271.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
          Length = 696

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/728 (34%), Positives = 389/728 (53%), Gaps = 54/728 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     + + +L  EI YH+  YY    P I D+EYD L      +    P L     P
Sbjct: 1   MTSSAITQRIEALRAEIRYHNHRYYVLDDPEIPDAEYDRLFAELQQLEAEHPALI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G E    L +V H++P +SL+   + E L +F  R+     + D   + +T E
Sbjct: 58  DSPTQRVGAEPRPELGEVRHAVPMISLDNAMSDERLVEFHRRLTVALPEFD--PVLYTAE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK DG  IT+RYE G  V AA RGDG  GEDV+   R IP +P R+L  + PE++EVRGE
Sbjct: 116 PKFDGLAITLRYESGVLVLAATRGDGTRGEDVTHNARTIPNVPLRLLGEDWPEVLEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEI 249
           VY+ +  F  LN  +   G +P+ANPRNAA+G LR+L+P    R  L F  +G G+ +  
Sbjct: 176 VYMPRAGFDRLNARLEERGERPFANPRNAAAGSLRQLDPRVTARRPLRFCAYGWGEIAGE 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q+EMLQ++   G P++  +RQ     G   Y+  +   R+TL YDIDG+V+K+D  
Sbjct: 236 PGESQFEMLQRLAGWGLPISPELRQVAGLDGCRDYFEALGRRRATLDYDIDGVVFKLDRL 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S Q  LG  A  PRW I+ KF  ++A T +  ++ Q+GRTG +TPVARL PV +GG  ++
Sbjct: 296 SAQTALGATAHHPRWAIARKFPAQEALTEVEAVEFQVGRTGAVTPVARLRPVQVGGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN D ++            +D+R+GD V ++RAG+VIP++V ++V  R   A+   
Sbjct: 356 KATLHNLDEVRR-----------KDVRIGDSVYIRRAGDVIPEIVRVLVERRPDGARLVE 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S V+R          A  RC+GGL C AQ+ E ++HF +R A +IEGLG++
Sbjct: 405 LPTQCPVCGSDVIRPEGE------AVARCSGGLWCPAQRKEAIRHFAARRALDIEGLGEK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     +R PAD++ L   +     ++      G+ S  NL  ++   +  +
Sbjct: 459 LIEQLVDLE----WVREPADLYRLTADRLALLERM------GEKSAANLIAALEHSKRTT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+F+LGIR VG   A+ LA++          I  ++A + +D    + +  +G ++A
Sbjct: 509 LARFVFALGIREVGETTAQLLAEHVGG-------IEALMAASVEDL---VAIKGIGPVVA 558

Query: 610 QAIVEFYQNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
             IV F     N  A+           EV  S     +  ++ +  K  V TGTL +  R
Sbjct: 559 AHIVGFMAQAHNREAIAHLLAAGIHWPEVERSDSMPAEPSAAPLTGKTFVITGTLSRP-R 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +    +  LGA V+  +S+KTD ++ G   GSKL KA+ LGV +++E     L+ +   
Sbjct: 618 EEFAARLQGLGAKVTGSVSKKTDYLLAGAEAGSKLAKAEALGVVVIDEAGLESLIARLQA 677

Query: 724 TLRIHDDD 731
              +H DD
Sbjct: 678 ---LHGDD 682


>gi|307289585|ref|ZP_07569529.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109]
 gi|306499399|gb|EFM68772.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109]
 gi|315164584|gb|EFU08601.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1302]
          Length = 676

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 392/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+++   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVHKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|229525582|ref|ZP_04414987.1| DNA ligase [Vibrio cholerae bv. albensis VL426]
 gi|229339163|gb|EEO04180.1| DNA ligase [Vibrio cholerae bv. albensis VL426]
          Length = 669

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 387/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    ++L+ L Q +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSNVEQKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         +   F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHS--AFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG I+A 
Sbjct: 509 PKFLYALGIREVGEATAFNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVIVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|256617609|ref|ZP_05474455.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200]
 gi|257089149|ref|ZP_05583510.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188]
 gi|312904259|ref|ZP_07763421.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635]
 gi|256597136|gb|EEU16312.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200]
 gi|256997961|gb|EEU84481.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188]
 gi|310632355|gb|EFQ15638.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635]
 gi|315578805|gb|EFU90996.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0630]
          Length = 676

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 391/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672


>gi|300861866|ref|ZP_07107946.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11]
 gi|300848391|gb|EFK76148.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11]
          Length = 676

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/716 (34%), Positives = 391/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + SY  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|163794455|ref|ZP_02188426.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199]
 gi|159180179|gb|EDP64702.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199]
          Length = 696

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/714 (39%), Positives = 414/714 (57%), Gaps = 29/714 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E LS  +A+ EL  L   IS  D  Y+    P++ D+EYDAL+RR  AI   FPDL  
Sbjct: 11  PVEELSDAEAKAELRRLSDAISEADRQYHVEDAPVLTDAEYDALRRRNQAIEERFPDLKL 70

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +   + P  ++    +    KV H+ P LSL   +N ED+ +F  R+ RF    +++ + 
Sbjct: 71  A---DSPSERVAPGPSEGFSKVRHARPMLSLANAFNDEDVHEFARRVRRFLSLGEEDELA 127

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
              EPKIDG    +RY  G+    A RGDG  GE+++  +  +  +P  L   +P I+EV
Sbjct: 128 LVAEPKIDGLSAALRYVDGRLEVGATRGDGTEGENITRNLETLDDVPTTLPAGVPGILEV 187

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY++K+DF+ALND     G K +ANPRNAA+G LR+L+PT    R L FF +  G+ 
Sbjct: 188 RGEVYMTKDDFVALNDRQAKAGGKIFANPRNAAAGSLRQLDPTITAARPLRFFAYSWGEI 247

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A   +E L+K+   GF  N   ++  +    ++ Y ++   R+TLPYDIDG+VYKV
Sbjct: 248 SENIADTHWEFLKKLEAWGFTTNPLSQRCESVESALAVYADIGERRTTLPYDIDGVVYKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q++LG  +R+PRW I+HKF  +QA T L  I+IQ+GRTG LTPVARLEPV + G 
Sbjct: 308 DRLDWQQRLGMVSRAPRWAIAHKFKAEQAETVLKAIEIQVGRTGALTPVARLEPVKVAGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHNE  I+            +D+RVGD V+++RAG+VIP+VV +I+ +R  D+ 
Sbjct: 368 TVSNATLHNEGEIRR-----------KDVRVGDTVVIQRAGDVIPQVVRVILEKRPADSV 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP C S   +          A  RCTGGL C AQ +ERLKHFVSRDAF+IEGL
Sbjct: 417 EYVFPETCPECGSDAEQPEGE------AIRRCTGGLICPAQAVERLKHFVSRDAFDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+D F+ +      I+ P DIF L++ +     +     G   +S  NL  +I  RR
Sbjct: 471 GSKQIDGFYSN----GLIKRPGDIFRLKQHRDVLIGEK----GTKTISTDNLLAAIEDRR 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I  +RFI+SLGIR VG   AR LA  Y + +     +       ++    L+ +  +G 
Sbjct: 523 SIGFDRFIYSLGIRQVGQATARLLAINYGTLEALRTAMAAAHDPESEAHADLLNIDQIGS 582

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +A+ + +F+    N   ++ L  E++ +         S I  K +VFTGTL +I R++A
Sbjct: 583 SVAKDLADFFAEDHNAEVLDDLAAELTIAPFAAPAASDSPIAGKTVVFTGTLTRIGRNEA 642

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +     LGA V+  +S+KTD +I+G + GSK  KA+ LGV  ++E+++  L+ +
Sbjct: 643 KAKAESLGAKVAGSVSKKTDYVIIGADAGSKAAKAEALGVPTLSEDEWFTLIGE 696


>gi|119898292|ref|YP_933505.1| DNA ligase (NAD+) [Azoarcus sp. BH72]
 gi|166215393|sp|A1K713|DNLJ_AZOSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119670705|emb|CAL94618.1| DNA ligase (NAD+) [Azoarcus sp. BH72]
          Length = 693

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/707 (37%), Positives = 387/707 (54%), Gaps = 49/707 (6%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           EI+ H+  YY    P I D+EYD L R    I  A P+L     P+ P  ++GG     L
Sbjct: 17  EIARHNHAYYVLDTPTIPDAEYDRLFRELQDIEAAHPELL---TPDSPTQRVGGAPLPEL 73

Query: 87  FKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKKDDNS-IFFTLEPKIDGTMITIRY 143
             V H++P LS+    +   + +R F TR+       D +  + +  E K DG  I++RY
Sbjct: 74  VPVRHAVPMLSIRTETDTTAQGVRNFDTRVRNALGLGDGDPAVEYLSELKFDGLAISLRY 133

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E G  V AA RGDG +GEDV+  +R I  IP  L    P +IEVRGE+Y+ ++DF ALN+
Sbjct: 134 EHGVLVRAATRGDGETGEDVTHNVRTIQQIPLRLHGAAPAVIEVRGEIYMRRDDFEALNN 193

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEI-FAKGQYEMLQKM 261
                G K + NPRNAA+G +R+L+P    R  L+FF +GLG+ +       Q E+L ++
Sbjct: 194 RQREAGDKVFVNPRNAAAGAVRQLDPRIAARRPLSFFAYGLGEHAGFDLPATQAELLTRL 253

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
              G PV      ++   G++++++ + ++R+ LPYDIDG+VYKV+   LQ++LG   R 
Sbjct: 254 AAFGVPVCEHREVSSGPEGLIAFHDRIAALRNELPYDIDGVVYKVNRVDLQRELGFVTRE 313

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HK+  ++  TRL  ID+Q+GRTG LTPVARLEPV +GG  +TNATLHN+D I  
Sbjct: 314 PRWAVAHKYPAQEEITRLAGIDVQVGRTGALTPVARLEPVFVGGVTVTNATLHNQDEIDR 373

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS---FPSFCPICQ 438
                      +D+RVGD V+V+RAG+VIP+VV  ++  R  +   F+       CP+C 
Sbjct: 374 -----------KDVRVGDWVIVRRAGDVIPEVVGPVLERRVGEPPRFNLLASYPTCPVCG 422

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S VVR      G+  A  RC+GGL C AQ+ + L HF  R A +IEGLG + ++    + 
Sbjct: 423 SHVVR------GEDEAVARCSGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVEQLVDAS 476

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++ PAD++ L      +  ++      G+ S  NL  +I K RN +L RFIF+LG
Sbjct: 477 I----VKTPADLYKLGILALANLERM------GEKSAQNLLAAIEKSRNTTLARFIFALG 526

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IR+VG   A+ LA+++ S           +           +VP VG ++A+ I EF+  
Sbjct: 527 IRNVGEATAKDLARHFGSLDALLAADEGALQ----------QVPDVGPVVAKCIAEFFAE 576

Query: 619 PRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             N+  VE L    +    G      S  +     V TGTL  + R +A+  +   G  V
Sbjct: 577 AHNVEVVEQLRAAGLRWEEGAPAAPASGSVAGLTFVITGTLPTLSRDEAKALIEAHGGKV 636

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           S  +S+KTD ++ G   GSKL KAQ LGV I++E+    LL+    +
Sbjct: 637 SGSVSKKTDYLVAGAEAGSKLAKAQDLGVDIVDEDGLRRLLESGEQS 683


>gi|297578580|ref|ZP_06940508.1| DNA ligase [Vibrio cholerae RC385]
 gi|297536174|gb|EFH75007.1| DNA ligase [Vibrio cholerae RC385]
          Length = 669

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    ++L+ L Q +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSNVEQKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         +   F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHS--AFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I  IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|256957407|ref|ZP_05561578.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5]
 gi|257077597|ref|ZP_05571958.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1]
 gi|294779927|ref|ZP_06745308.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1]
 gi|256947903|gb|EEU64535.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5]
 gi|256985627|gb|EEU72929.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1]
 gi|294452976|gb|EFG21397.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1]
 gi|295114065|emb|CBL32702.1| DNA ligase, NAD-dependent [Enterococcus sp. 7L76]
 gi|315036101|gb|EFT48033.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0027]
 gi|315172192|gb|EFU16209.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1346]
          Length = 676

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 391/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672


>gi|71907364|ref|YP_284951.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB]
 gi|123746888|sp|Q47FA0|DNLJ_DECAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71846985|gb|AAZ46481.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB]
          Length = 683

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/720 (36%), Positives = 381/720 (52%), Gaps = 54/720 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E   K  +    E+  H   YY    P I D+EYD L R    +   +P+L  +   + 
Sbjct: 4   PEDVAKRAAWYRSELERHSYAYYVLDAPTIPDTEYDKLFRELQELEQQYPELLTA---DS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P +++GG          H +P LSL   +  E++  F  RI    +     ++ + +EPK
Sbjct: 61  PTHRVGGVPLKEFPPRQHGVPMLSLNNAFAPEEVEAFDKRIRDGLETIA--AVDYAVEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
            DG  I++ YE G F   A RGDG +GE+V+  +R +  IP  L     P +IE+RGEV 
Sbjct: 119 FDGLAISLTYENGVFTCGATRGDGVTGEEVTPNLRTLRCIPLRLRGEGWPALIEIRGEVL 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K DF  LN      G K +ANPRNAA+G LR+L+      R L+FF +G+G  ++  A
Sbjct: 179 MFKADFAELNARQRERGDKEFANPRNAAAGSLRQLDSKITAGRPLSFFAYGVGAGADALA 238

Query: 252 -KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   EM+  +   GFPV    R      G++ Y+ E+   R  LPYDIDG+VYKV+   
Sbjct: 239 VKTHGEMMGLLAAWGFPVAEERRVVQGVRGLLGYFVEIGVKRPGLPYDIDGVVYKVNRLD 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q QLG  +R+PR+ I+HKF  ++A T +L ID+Q+GRTG +TPVARL+PV +GG  +TN
Sbjct: 299 WQAQLGFVSRAPRFAIAHKFPAEEALTEVLGIDVQVGRTGAITPVARLKPVFVGGVTVTN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD------ 424
           ATLHNED ++            +D+R+GD V+V+RAG+VIP+VV I+  +R         
Sbjct: 359 ATLHNEDEVRR-----------KDVRLGDTVIVRRAGDVIPEVVAIVPEKRPMRDLFGSE 407

Query: 425 --AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
               PF  P+ CP C S VV+      G   A  RCTGGL C AQ+ + L HF +R A +
Sbjct: 408 PLNPPFELPATCPECGSAVVK------GDDEAIARCTGGLYCPAQRKQALWHFAARRAMD 461

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG + +D        A  +  PAD++ L         ++      G+ S  NL  +I
Sbjct: 462 IEGLGDKLVDQLVD----AGLVHSPADLYGLTVETLAGLERM------GEKSAQNLVAAI 511

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           +K R  +L RFIF LGIR+VG   AR LAK++          +  +            VP
Sbjct: 512 DKSRQTTLARFIFGLGIRNVGEATARDLAKHFGGLDALLAADSAALQM----------VP 561

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            VG ++A+++  F+    N   ++      VS   G   +     +  K LV TGTL  +
Sbjct: 562 DVGPVVAESLAAFFAEAHNREVIDGLRRAGVSWPEGEPAQAGPQLLAGKTLVLTGTLPTL 621

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +R +A+  V   G  V+  +S+KTD ++ G+  GSKLEKAQ+LGV +++E + + LL + 
Sbjct: 622 KRDEAKALVEAAGGKVAGSVSKKTDYVVAGEEAGSKLEKAQELGVPVIDEAELMKLLAKG 681


>gi|255971181|ref|ZP_05421767.1| NAD-dependent DNA ligase [Enterococcus faecalis T1]
 gi|255962199|gb|EET94675.1| NAD-dependent DNA ligase [Enterococcus faecalis T1]
          Length = 676

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 391/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 AEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|229548668|ref|ZP_04437393.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200]
 gi|257420983|ref|ZP_05597973.1| DNA ligase [Enterococcus faecalis X98]
 gi|312953107|ref|ZP_07771956.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102]
 gi|229306184|gb|EEN72180.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200]
 gi|257162807|gb|EEU92767.1| DNA ligase [Enterococcus faecalis X98]
 gi|310628941|gb|EFQ12224.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102]
 gi|315153982|gb|EFT97998.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0031]
 gi|315156746|gb|EFU00763.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0043]
          Length = 676

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 390/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ANSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE+  +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQAMVDALD 672


>gi|29375318|ref|NP_814472.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583]
 gi|227554838|ref|ZP_03984885.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22]
 gi|256761492|ref|ZP_05502072.1| NAD-dependent DNA ligase [Enterococcus faecalis T3]
 gi|257415292|ref|ZP_05592286.1| NAD-dependent DNA ligase [Enterococcus faecalis AR01/DG]
 gi|257418334|ref|ZP_05595328.1| NAD-dependent DNA ligase [Enterococcus faecalis T11]
 gi|81437298|sp|Q837V6|DNLJ_ENTFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29342778|gb|AAO80542.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583]
 gi|227176007|gb|EEI56979.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22]
 gi|256682743|gb|EEU22438.1| NAD-dependent DNA ligase [Enterococcus faecalis T3]
 gi|257157120|gb|EEU87080.1| NAD-dependent DNA ligase [Enterococcus faecalis ARO1/DG]
 gi|257160162|gb|EEU90122.1| NAD-dependent DNA ligase [Enterococcus faecalis T11]
 gi|315031451|gb|EFT43383.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0017]
 gi|315166929|gb|EFU10946.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1341]
 gi|315575350|gb|EFU87541.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309B]
 gi|315581380|gb|EFU93571.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309A]
          Length = 676

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 391/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLAQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|262172020|ref|ZP_06039698.1| DNA ligase [Vibrio mimicus MB-451]
 gi|261893096|gb|EEY39082.1| DNA ligase [Vibrio mimicus MB-451]
          Length = 670

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/712 (34%), Positives = 382/712 (53%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L  L Q +  H   YY    P I D+EYD L R    +  A P+L     P+ 
Sbjct: 1   MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H IP LSL+  ++  +L  F  R+             F  EPK
Sbjct: 58  PSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIP--AVQQSHFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+P  F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS + R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 405 PACCPVCQSEIERIEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVDGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA+++L+    AQ   +           LI VP VG ++A 
Sbjct: 509 PRFLYALGIREVGEATALNLAQHFLTLDAIAQASMD----------QLIEVPDVGGVVAS 558

Query: 611 AIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+   RN   +  L+                  S +  K +V TG+  ++ R+ A+
Sbjct: 559 HLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALAGKVVVLTGSFTQLSRNDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E+  +  L+
Sbjct: 619 AALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQALIDFLK 670


>gi|323705997|ref|ZP_08117567.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534611|gb|EGB24392.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 659

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/705 (32%), Positives = 370/705 (52%), Gaps = 49/705 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
               +  L  ++++H   YY   KP I D EYD + R    +   +P     + P+ P  
Sbjct: 3   IEDRIKELRDKLNHHSYMYYVLDKPEISDYEYDMMMRELIELEEKYPQF---KTPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE        TH +P  SL   ++  +LR F  R+           + + +E KIDG
Sbjct: 60  RVGGEPLKEFEPFTHVVPMQSLANAFSEGELRDFDRRVRAS-----VGDVEYVVEFKIDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G F   + RGDG  GE+V+  ++ I +IP  L  ++   + VRGEV++ K 
Sbjct: 115 LSVELIYENGFFTVGSTRGDGIIGENVTNNLKTIKSIPLRLKDDL--NLIVRGEVFMPKA 172

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN+E    G   +ANPRNAA+G LR+LNP     R L+ FV  L +   I  K   
Sbjct: 173 SFEKLNEERELNGESLFANPRNAAAGSLRQLNPKITAKRDLDIFVFNLQRIDGIELKTHA 232

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ ++  GF V+  ++       ++   N ++ IR +L Y+ DG V KV++   ++ L
Sbjct: 233 EALEFLKYQGFKVSPHIKVCGNIDEVIEDINYIRDIRDSLSYETDGAVVKVNDLEKREIL 292

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+ PRW I+ K+  ++  T++ DI +Q+GRTG LTP A LEPV I G++++ ATLHN
Sbjct: 293 GSTAKDPRWAIAFKYPTERQKTKVKDIVVQVGRTGALTPTAILEPVKIAGSIVSRATLHN 352

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYIK            +DIR+GD V++++AGE+IP+VV ++  ER    + F  P  CP
Sbjct: 353 EDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVSVVAEERDGSEKFFIMPEVCP 401

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C +  VR          +  +CTG L C A+    + HF S+DA +I+GLG   +    
Sbjct: 402 ECGAATVRLPGE------SVTKCTG-LNCPAKLKRGIIHFASKDAMDIDGLGPAVIGQLL 454

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            +      I   +D++ L+        ++      GD S  NL ++I + +   L+R IF
Sbjct: 455 DNH----LIHNISDLYYLKYDDLVKLDRM------GDKSAKNLINAIEESKGRDLDRLIF 504

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI  +G++ A  LA ++ + ++  +            +  L  +  +G  +A ++V F
Sbjct: 505 GLGIDLIGSKAAGILASHFKTMESLEKAT----------FEELTEIEEIGPKMADSVVAF 554

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++  +N+  ++ L         +   NV+   +    V TGTL+K  R +A+  + + G 
Sbjct: 555 FKEKQNLDIIDRLKAAGVNMRKKDAINVNDNFKGLTFVLTGTLEKYTRDEAKRLIEERGG 614

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V+  +S+KTD ++VG +PGSKL KAQ+LGVKI+NEEQF  +L+Q
Sbjct: 615 KVTGSVSKKTDYVVVGADPGSKLSKAQELGVKILNEEQFENMLKQ 659


>gi|192361192|ref|YP_001982383.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107]
 gi|254781281|sp|B3PGQ8|DNLJ_CELJU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190687357|gb|ACE85035.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107]
          Length = 680

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/712 (33%), Positives = 388/712 (54%), Gaps = 46/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +    E++ L ++I YH+  YY   +P I D+EYD L +R   +   +P    S  P+ P
Sbjct: 8   DDVSAEIAQLREQIRYHNYRYYALDEPQIPDAEYDRLMQRLRELEAQYP---ASVTPDSP 64

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G     +   V H IP LSL+  +   D+  F  RI    +  ++  I +  E K+
Sbjct: 65  TQRVGAAPLSAFQTVEHQIPMLSLDNAFEEADVIAFNQRILDRLKSTEN--IEYACELKL 122

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  +++ Y  G  V  A RGDG  GED++  +R I ++P ++L    P ++EVRGEVY+
Sbjct: 123 DGLAVSLLYRDGVLVRGATRGDGSKGEDITQNLRTIASVPLKLLGEGYPAVLEVRGEVYM 182

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
            K  F ALN++  + G K + NPRNAA+G LR+L+     +R L    + +G        
Sbjct: 183 PKAGFNALNEKARSTGEKLFVNPRNAAAGALRQLDSRITASRPLEMCAYSVGLVEGGELP 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +L  ++  GF  N     A+T    +++Y  +++ R +L YDIDG+V+KV+   L
Sbjct: 243 GTHTGILAALKSWGFLTNKETATASTIADCIAFYQSIQARRDSLAYDIDGIVFKVNAREL 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  +R+PRW I++KF  ++  T L D++ Q+GRTG +TPVARL+PV +GG  ++NA
Sbjct: 303 QESLGFISRAPRWAIAYKFPAQEEMTVLQDVEFQVGRTGAVTPVARLQPVFVGGVTVSNA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            I +GD V+V+RAG+VIP++V ++ + R  DA+P  FP
Sbjct: 363 TLHNRDEIQRL-----------GIMIGDTVIVRRAGDVIPQIVQVVESRRPTDARPVLFP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S V      +T +  A  RC+GGL C+AQ+ E +KHF SR A ++EGLG + +
Sbjct: 412 DHCPVCGSPV------ETLEDEAIARCSGGLVCAAQRKEAIKHFASRKALDVEGLGDKLV 465

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +    +      +   ADI+ L   Q  +  ++      G+ S  NL  ++   ++ +L 
Sbjct: 466 EQLVDT----GLVSKLADIYQLTGEQLAAMERM------GEKSADNLLQALEASKHTTLA 515

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +FI++LGIR +G   AR+LA ++ S +  A+           D  +L++V  VG + A  
Sbjct: 516 KFIYALGIREIGEATARNLANHFGSLEKLAEA----------DEETLVQVNDVGPVGAHF 565

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYV 670
           + EF+    N  AV  L              +    ++    V TGTL+ + R  A+ ++
Sbjct: 566 VAEFFAQESNRQAVADLRAAGIHWQDLDVSTIEDLPLKGLTYVLTGTLEVMSRDDAKAHL 625

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S KTD ++ G   GSKL+KA++L + +M+EE  L LL+++ 
Sbjct: 626 LALGAKVAGSVSAKTDYVVAGPGAGSKLQKARELNLNVMDEEALLDLLRKHG 677


>gi|311104688|ref|YP_003977541.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
 gi|310759377|gb|ADP14826.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
          Length = 702

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/723 (35%), Positives = 384/723 (53%), Gaps = 68/723 (9%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           EI  H+  YY Y +P I D+EYD L R   A+    P+L     P  P  ++G     + 
Sbjct: 20  EIEQHNVRYYVYDEPSISDAEYDGLMRELQALEAEHPELV---TPESPTQRVGAAPVSAF 76

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSIFFTLEPKIDGTMITIR 142
             V H +P LSL   ++ ED+  F  R+    +            +  E K+DG  I++R
Sbjct: 77  GSVRHVVPMLSLGNAFDEEDVAAFDRRVTDTLRGAGLLGPAQQADYFCELKLDGLAISLR 136

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE G+ V AA RGDG +GEDV++ IR I  IP  L    P+++EVRGEV +++ DF  LN
Sbjct: 137 YEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGTFPKVLEVRGEVLMNRADFEKLN 196

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI------------ 249
                   K + NPRNAA+G LR+L+P     R L FF +G G+   +            
Sbjct: 197 QAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLAGTQGGLFAEAS 256

Query: 250 ---------FAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
                      K    ML  +  LG PVN     +A+   G++++Y ++  +R  LPYDI
Sbjct: 257 AGAAEASQLPEKSHGAMLDWLASLGLPVNVKHNHRASGAEGLMAFYAKVGKLRPELPYDI 316

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    QK LG  AR+PR+ ++HKFA ++A+T LLDI++Q+GRTG +TPVARL+
Sbjct: 317 DGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGAITPVARLK 376

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHNED I+            +D+R+GD V+V+RAG+VIP+V+  ++ 
Sbjct: 377 PVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDTVIVRRAGDVIPEVLGPVLE 425

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA+ F  P+ CPIC S + R  +          RCTGGL C AQ+ + L H  SR 
Sbjct: 426 KRPDDAREFVMPTACPICGSAIERLEDETIA------RCTGGLFCGAQRKQTLWHAASRK 479

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG++ +D    S      ++  AD+++L+  +     ++         S  NL 
Sbjct: 480 ALDIEGLGEKLVDQLVDSGR----VKTLADLYSLRPLELVGLDRMGQ------KSADNLV 529

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I+K R  +L R +++LGIRHVG   AR +A+++ S         + ++          
Sbjct: 530 AAIDKARAPALNRLLYALGIRHVGETTARDVARHFGSIDAIMDADEDALS---------- 579

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            VP VG ++A +I  F+    N   +E L  +    +        + +  K  V TGTL 
Sbjct: 580 SVPDVGPVVAASIRRFFAEQHNRDVIEQLKAQGVNPVAEAAPQA-TTLAGKTFVLTGTLP 638

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LGV +++E+    LL 
Sbjct: 639 NWTREEASMRIQAAGGKVSGSVSKKTAYLVAGEDSGSKLAKAQELGVTVLDEDGLKTLLG 698

Query: 720 QYN 722
           +  
Sbjct: 699 EQG 701


>gi|167038089|ref|YP_001665667.1| NAD-dependent DNA ligase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116496|ref|YP_004186655.1| NAD-dependent DNA ligase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|254781439|sp|B0KBN6|DNLJ_THEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166856923|gb|ABY95331.1| DNA ligase, NAD-dependent [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929587|gb|ADV80272.1| DNA ligase, NAD-dependent [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 662

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/707 (34%), Positives = 386/707 (54%), Gaps = 49/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+L   + P+ P  +
Sbjct: 4   KERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEL---KTPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +LR F  R+           + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVRE-----AVGDVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YEKG F   + RGDG  GE+V+  ++ I +IP  L  ++   + VRGEV++ +  
Sbjct: 116 SVELIYEKGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDV--SLVVRGEVFMPRAS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L K      K   E
Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +   GF +    ++ +    ++    E++++R  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLEFLNEQGFKIIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V+V++AGE+IP+VV+++  ER    + F  P  CP 
Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR L        A  RCTG L C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVRLLGE------AIRRCTG-LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++ L+        ++      GD SV NL ++I + +   L+R +F 
Sbjct: 456 K----GLIHNIADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++ +  N  +            +    ++P +G  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHFKTMDNIMKA----------KFEDFTQLPDIGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +N+  +E L           ++ V++  E K  V TG L    R +A   + + G  
Sbjct: 556 AEKQNVEIIEKLKNAGVNMKKIPKEKVNNIFEGKTFVLTGALGNYTREEATRIIEERGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KTD ++VG +PGSKL+KAQ+LG+KI++E+QF  +L+  N 
Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGENI 662


>gi|332532506|ref|ZP_08408384.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038149|gb|EGI74596.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 672

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/707 (35%), Positives = 385/707 (54%), Gaps = 45/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++++ L   +  H+  YY    P I DSEYD L R   A+    P+   +   + P  K+
Sbjct: 7   EQINHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALEMQHPEFLTA---DSPTQKV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG       +V H +P LSL+  ++ E+   F  RI       D   + F  EPK+DG  
Sbjct: 64  GGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKDRLMSTD--ELTFCCEPKLDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++I Y  G  V AA RGDG +GE+++  ++ I  +P  L  + P+ +EVRGEV++    F
Sbjct: 122 VSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEVFMDSAGF 181

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQYE 256
             LN E    G K + NPRNAA+G LR+L+      R L F+ +  G        +  Y+
Sbjct: 182 DKLNTEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHYQ 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K+   G P+    +        + YY+++ + R  L Y+IDG+V K+++ +LQ++LG
Sbjct: 242 QLEKLTDWGLPLCPETKLVEGPKAALEYYSDILTRRGELKYEIDGVVIKINQKALQERLG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++NATLHN 
Sbjct: 302 FVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNG 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L            ++VGD V+++RAG+VIP++  +++  R  DA+   FP  CPI
Sbjct: 362 DEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPVTCPI 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V +          A  RCTGGL C AQ+ + +KHF SR A +I+GLG + +D    
Sbjct: 411 CDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLVD 464

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I+ PAD+F L++    S  ++      G  S  NL  ++ + +  +L +F++S
Sbjct: 465 RE----LIKTPADLFILKQGHFESLERM------GPKSAKNLVTALEEAKGTTLAKFLYS 514

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR  G   A++LA ++L+ +N            N    SL +V  VG+I+A  +  F+
Sbjct: 515 LGIREAGEATAQNLANHFLTLENI----------INASIDSLTQVSDVGEIVATHVRGFF 564

Query: 617 QNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
               N+  V AL+++ V+             +     V TGTL  + R+ A+  + QLGA
Sbjct: 565 DEEHNLEVVNALIEQGVNWPALSAPSEEEQPLAGLTYVLTGTLNTLNRNDAKARLQQLGA 624

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            VS  +S KTD ++ G+  GSKL KAQ LG+ I+ E++ + LLQ++N
Sbjct: 625 KVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTEDELIELLQKHN 671


>gi|258621988|ref|ZP_05717017.1| DNA ligase [Vibrio mimicus VM573]
 gi|258585741|gb|EEW10461.1| DNA ligase [Vibrio mimicus VM573]
          Length = 670

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/712 (34%), Positives = 382/712 (53%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L  L Q +  H   YY    P I D+EYD L R    +  A P+L     P+ 
Sbjct: 1   MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H IP LSL+  ++  +L  F  R+             F  EPK
Sbjct: 58  PSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIP--AVQQSHFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDIR 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+P  F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS + R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 405 PACCPVCQSEIERIEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVDGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA+++L+    AQ   +           LI VP VG ++A 
Sbjct: 509 PRFLYALGIREVGEATALNLAQHFLTLDAIAQASMD----------QLIEVPDVGGVVAS 558

Query: 611 AIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+   RN   +  L+                  S +  K +V TG+  ++ R+ A+
Sbjct: 559 HLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALAGKVVVLTGSFTQLSRNDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E+  +  L+
Sbjct: 619 AALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQALIDFLK 670


>gi|326390897|ref|ZP_08212448.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200]
 gi|325993045|gb|EGD51486.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200]
          Length = 662

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/707 (34%), Positives = 383/707 (54%), Gaps = 49/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+    + P+ P  +
Sbjct: 4   KERVKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---KTPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +LR F  R+           + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVRE-----AVGDVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G F   + RGDG  GE+V+  ++ I +IP  L  ++   + VRGEV++ +  
Sbjct: 116 SVELIYENGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDV--SLVVRGEVFMPRTS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L K      K   E
Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++  GF V    ++ +    ++    E++++R  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLEFLKEQGFKVIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V+V++AGE+IP+VV+++  ER    + F  P  CP 
Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR          A  RCTG L C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVRLPGE------AIRRCTG-LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++ L+        ++      GD SV NL ++I + +   L+R +F 
Sbjct: 456 K----GLIHNIADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++ +  N  +            +     +P +G  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHFKTMDNIMKA----------KFEDFTHLPDIGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +N+  +E L           +  VS+  E K  V TG L+   R +A   + + G  
Sbjct: 556 AEKQNVEIIEKLKNAGVNMKKLSKGKVSNIFEGKTFVLTGALENYTREEATRMIEERGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KTD I+VG +PGSKL+KAQ+LG+KI++E+QF  +L+  N 
Sbjct: 616 VTNSVSKKTDYILVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGENI 662


>gi|257086082|ref|ZP_05580443.1| NAD-dependent DNA ligase [Enterococcus faecalis D6]
 gi|256994112|gb|EEU81414.1| NAD-dependent DNA ligase [Enterococcus faecalis D6]
 gi|315025779|gb|EFT37711.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2137]
          Length = 676

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/716 (33%), Positives = 391/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D +++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHIIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|315161924|gb|EFU05941.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0645]
          Length = 676

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/716 (34%), Positives = 391/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + SY  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTLKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|229529935|ref|ZP_04419325.1| DNA ligase [Vibrio cholerae 12129(1)]
 gi|229333709|gb|EEN99195.1| DNA ligase [Vibrio cholerae 12129(1)]
 gi|327483693|gb|AEA78100.1| DNA ligase [Vibrio cholerae LMA3894-4]
          Length = 669

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 385/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+    Q    +   F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHS--AFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I  IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R  L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|94499335|ref|ZP_01305873.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65]
 gi|94428967|gb|EAT13939.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65]
          Length = 694

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/708 (35%), Positives = 381/708 (53%), Gaps = 46/708 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L  E++  +  YY    P I D+EYD L      +    P+L      + P  ++G
Sbjct: 25  RVAELRDELNRANHAYYVLDDPSIPDAEYDRLFHELKGLESKHPELLTK---DSPTQRVG 81

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                    V H +P LSL+  ++ +D+R F  RI      K  +SI F  EPK+DG  +
Sbjct: 82  ATPLSEFETVAHEVPMLSLDNAFDDQDMRDFNRRISERLTTK--SSIRFACEPKLDGIAV 139

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE GK V AA RGDG  GE+++  IR + ++P  L   + P ++EVRGEVY+ K  F
Sbjct: 140 SLLYENGKLVRAATRGDGAVGENITQNIRTVYSVPLTLMGNDHPPVLEVRGEVYMPKKGF 199

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG-QYE 256
            A N +    G K + NPRNAA+G LR+L+     +R L F  + +G+           E
Sbjct: 200 EAFNVKARERGEKTFVNPRNAAAGSLRQLDSRITASRPLEFCCYSMGRVDGAELPTVHSE 259

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+K    GF +N  +       G + YY  + + R+ LPY+IDG+VYKVD+  LQ++LG
Sbjct: 260 ILKKFSEWGFKINPEMAVVEGVEGCLDYYENLAAKRNDLPYEIDGIVYKVDDLKLQQRLG 319

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+ KF  ++  T L  I+ Q+GRTG +TPVARLEPV +GG  ++NATLHN 
Sbjct: 320 FVSRAPRWAIARKFPAQEEMTLLKGIEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNM 379

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++ L           D R+GD V+++RAG+VIP+V  ++  +R  ++Q    P  CP+
Sbjct: 380 DEVERL-----------DARIGDTVVIRRAGDVIPQVASVVKEKRPDNSQKIQLPDACPV 428

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R          A  RCTGGL C+AQ+ E +KHF SR A +I+GLG + ++    
Sbjct: 429 CDSHVERVEGE------AVARCTGGLVCAAQRKEAIKHFASRKAMDIDGLGDKIVEQLVD 482

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   D++ L+     S  ++      GD S  NL  +I   +N S  +F+++
Sbjct: 483 EGK----IKSFVDLYKLKHEDIASLERM------GDKSAQNLLKAIEASKNTSFPKFLYA 532

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +L +++L+          I A     +  LI V  VG I+A+ I+ F+
Sbjct: 533 LGIREVGVATANNLVQHFLT----------IRALVKASFDELIEVDDVGPIVAEHILNFF 582

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             P N   ++  L   ++    +   N    +  +  V TGTL  + R  A+ Y+ QLGA
Sbjct: 583 AEPHNQTIIDGLLNIGITWPEVKSVSNSELPLSGETYVVTGTLSAMGRENAKAYLQQLGA 642

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            V+  +S+KT  ++ G+  GSKL KAQ L V +++EEQFL LL ++  
Sbjct: 643 KVAGSVSKKTSALVAGEKAGSKLTKAQDLEVPVLDEEQFLSLLAEHGI 690


>gi|148263373|ref|YP_001230079.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4]
 gi|190359259|sp|A5GA98|DNLJ_GEOUR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146396873|gb|ABQ25506.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4]
          Length = 672

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/709 (36%), Positives = 382/709 (53%), Gaps = 44/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A + +  L +EI+ H+  YY   +P I D+EYD L R    +  A+PDL  +   
Sbjct: 1   MDKQAAERRIQELHKEINRHNYLYYVEDRPEINDAEYDLLLRELQQLEKAYPDLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G        +VTH +P LSLE  +N E++  F  RI RF      + I +  E
Sbjct: 58  DSPTQRVGAAPLEKFSQVTHRMPMLSLENAFNEEEMHDFDERIKRFLGLAAGDEIEYVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  + + YE G F   + RGDG+ GEDV+  +R + TIP  L++   P + EVRGE
Sbjct: 118 PKMDGLAVELVYENGDFTVGSTRGDGYVGEDVTQNLRTVKTIPLSLAIATPPRLFEVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEI 249
           VY+    F  LN E    G  P+ANPRNAA+G LR+L+     R  L+ F +  G     
Sbjct: 178 VYLGLAPFQKLNVEREEAGDPPFANPRNAAAGSLRQLDSRITARRPLSIFCYAAGSLEGH 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q ++L  +   G PVN  +R+ +   G+++YY+EM   R +LPY+IDG+V KVD F
Sbjct: 238 EFTSQSDLLNTIPGWGLPVNPLIRKVSGIGGVLAYYHEMSEKRESLPYEIDGVVVKVDSF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LGE+ RSPRW I+ KF  +QA T + +I  Q+GRTG++TPVA L PV + G +++
Sbjct: 298 DLQRELGEKTRSPRWAIAWKFPPRQAVTVVEEIVPQVGRTGVITPVAHLRPVEVSGVMVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR GD V+V+RAG+VIP VV +I  +R  D QP  
Sbjct: 358 RATLHNWEEMEK-----------KDIRKGDTVVVERAGDVIPAVVKVITEKRKGDEQPLP 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S VV+           A RC G L+C AQ  E + HF SR A +I+G+G +
Sbjct: 407 IPANCPECGSEVVKIPGE------VAVRCLG-LSCPAQIRETIIHFASRHAMDIDGMGDK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   K       ++  AD++ L++       ++      GD    NL  +I   +   
Sbjct: 460 YIEQLLK----LGLVKNVADLYYLKKDDFMRFERM------GDKLAENLLGAIETSKQRE 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI++LGIRHVG   A+ LA  + S +N        +          + +  VG  +A
Sbjct: 510 LSRFIYALGIRHVGEHTAKLLANAFGSMENLEHASEEEL----------LSIREVGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q+I  F+ N  NI  ++  +          EK V      K  VFTG L +  R  A+  
Sbjct: 560 QSIRTFFHNRNNIEVIDR-MFNAGVKPSVEEKRVGGRFTGKTFVFTGALTRFTRDDAKRM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V   G   +  +S+KTD ++ G   GSKL+KA+QLGVK++ E++FL +L
Sbjct: 619 VENEGGHAAGSVSKKTDFVVAGAEAGSKLDKARQLGVKVLTEDEFLAML 667


>gi|229512467|ref|ZP_04401940.1| DNA ligase [Vibrio cholerae TMA 21]
 gi|229350548|gb|EEO15495.1| DNA ligase [Vibrio cholerae TMA 21]
          Length = 669

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    ++L+ L Q +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSNVEQKLTELRQILHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         +   F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHS--AFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F  LN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEVLNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG I+A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVIVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TD++  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|83592275|ref|YP_426027.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170]
 gi|123753272|sp|Q2RVV5|DNLJ_RHORT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83575189|gb|ABC21740.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170]
          Length = 698

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/719 (39%), Positives = 425/719 (59%), Gaps = 31/719 (4%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP+  L+  +A +EL  L  EI+ HD  Y+Q   P I D EYDAL RR + I  AFP+L
Sbjct: 1   MIPVADLTEAEAARELERLAAEIARHDRLYHQQDAPEITDGEYDALVRRNNEIEAAFPEL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R + P+     +G        KVTH++P LSL  +++ ++ R+F  RI RF     + +
Sbjct: 61  VRGDSPSA---HVGAAPAEGFAKVTHALPMLSLGNVFSDDEAREFDQRIRRFLSLDGETT 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPE 183
           I +  EPKIDG   + RYE G +  AA RGDG +GED++A +  +  +P+ L+ +  +PE
Sbjct: 118 ISYVAEPKIDGLSFSARYENGVYRRAATRGDGTTGEDITANLATLTDLPQRLTGDGPVPE 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242
           ++EVRGEV+++K DF ALN   I  G KP+ANPRNAA+G LR+L+P    +R L+ F + 
Sbjct: 178 VLEVRGEVFMTKADFRALNQRQIDAGAKPFANPRNAAAGSLRQLDPEITRSRSLSLFAYA 237

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+   +  +  +  L++++  GFPVN   R       ++   + +   R+ L YDIDG+
Sbjct: 238 SGEVKGLEVESHHAFLERLKTWGFPVNPQTRPCQGVEDLIEATHALALQRAALDYDIDGV 297

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKVD    QK+LG  +R+PRW I+ KF  ++A T +  I IQ+GRTG LTPVA LEPV 
Sbjct: 298 VYKVDRVDWQKRLGFVSRAPRWAIARKFPAERAQTTVKAIQIQVGRTGTLTPVAILEPVT 357

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG ++  ATLHNED I             +D+R+GD V ++RAG+VIP+VV++++++R 
Sbjct: 358 VGGVVVGRATLHNEDEIAR-----------KDVRIGDMVTIQRAGDVIPQVVEVLLDQRP 406

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D+ PF FP  CP+C S  VR           A RC GGL CSAQ +ERLKHFVSRDAF+
Sbjct: 407 ADSAPFVFPETCPVCGSHAVRQEGE------VARRCAGGLICSAQAVERLKHFVSRDAFD 460

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT--STTKIENILGFGDVSVTNLYD 540
           IEGLG + ++ F         I  PADIF L+ +     +   + +  G+G  S  NL+ 
Sbjct: 461 IEGLGGKHIETFHNE----GLITQPADIFALEAKDNEPGALQHLRSREGWGPKSAENLFK 516

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I  R+ I L+RFI++LGIR VG   AR LA +Y S+  + + ++      ++ +  L  
Sbjct: 517 AITARKTIPLDRFIYALGIRQVGQATARLLAGHYASFAAWRKAMDEAQTEGSEAFADLQN 576

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTL 658
           +  +G  +A+ +V F+    N  A++AL+          R +    S +  K +VFTGTL
Sbjct: 577 IESIGPSVARDLVAFFGEEHNRAALDALIDAGVEVLDFARPQAAGDSPLAGKTVVFTGTL 636

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             + R +A+     LGA V+  +S KTD ++VG + GSK +KA++LG+ +++E +F  +
Sbjct: 637 DTMSRGEAKARALALGAKVTGSVSAKTDYVVVGADAGSKEKKARELGLTVLSEAEFRAM 695


>gi|84516174|ref|ZP_01003534.1| DNA ligase [Loktanella vestfoldensis SKA53]
 gi|84509870|gb|EAQ06327.1| DNA ligase [Loktanella vestfoldensis SKA53]
          Length = 722

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/713 (40%), Positives = 421/713 (59%), Gaps = 16/713 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +  L+  +A  EL+ L Q ++  +  Y++   P I D+ YDALK+R  AI   F +L 
Sbjct: 22  IAVADLTRAEAMVELARLAQTLAQANTAYHRNDTPEISDAAYDALKQRNAAIEARFRELK 81

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P +++G  +     KV H++  LSL   ++ +D+  F  R+ ++     D  +
Sbjct: 82  RA---DSPSDQVGAVVADGFGKVQHAVRMLSLGNAFSDDDVTDFDERLRKYLGLTADQPL 138

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE G  V AA RGDG  GE+V+A    I  IP+ L+   P ++E
Sbjct: 139 RYTAEPKIDGLSLSLRYEDGVLVQAATRGDGAVGENVTANACTIADIPQRLT-GAPAVLE 197

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S +DF ALN      G K +ANPRNAA+G LR+L+      R L FF +  G 
Sbjct: 198 VRGEVYMSHDDFAALNARQADKGAKTFANPRNAAAGSLRQLDAGITAARPLRFFAYAWGA 257

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A  Q   + ++  LGF  N      ++   +++ Y+ +++ R++L YDIDG+VYK
Sbjct: 258 LSAPLAATQSGAIARLAELGFATNPLTATCDSPADLIAIYSGIEAQRASLGYDIDGVVYK 317

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 318 VDDLALQQRLGFRSTTPRWAIAHKFPAELAWTVLDAIDIQVGRTGALSPVARLVPVTVGG 377

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI G    G+ +R GRDIRVGD V V RAG+VIPK+ D+    R   A
Sbjct: 378 VVVSNATLHNEDYIAGRGGDGQPIRQGRDIRVGDWVQVYRAGDVIPKIKDVDSARRPAGA 437

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP  CP C S  +RD         A  RCTGG+ C AQ +ERLKHFVSR AF+IEG
Sbjct: 438 TPYIFPDTCPECGSPAIRDPG------DAVRRCTGGMICPAQAVERLKHFVSRAAFDIEG 491

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F         I  P DIFTL+ R      +++N  G+G  S  NL+ +I+ +
Sbjct: 492 LGAKQVEQFHAD----GWITTPVDIFTLRARYGQGLQQLKNREGWGAKSADNLFAAIDDK 547

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I+L R I++LGIRHVG   A  LA +Y S+  FA  +          W +L  +  VG
Sbjct: 548 RAIALNRLIYALGIRHVGESSAALLANHYGSWAGFATAMQAAHIGQGPAWDALTSIDGVG 607

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++A +++   QNP    ++ AL+ ++       +    S +    +VFTGTL+K+ R +
Sbjct: 608 AVMATSLITTLQNPSEAASIAALVAQLDVQ-DAPKIASDSPVSGLTVVFTGTLEKMTRAE 666

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+     LGA V+  +S KTDI++ G   GSK  KA+ LG++ M+E+ +L L+
Sbjct: 667 AKARAESLGAKVAGSVSAKTDILVAGPGAGSKAAKAEALGIRTMDEDGWLALI 719


>gi|89094416|ref|ZP_01167356.1| DNA ligase [Oceanospirillum sp. MED92]
 gi|89081308|gb|EAR60540.1| DNA ligase [Oceanospirillum sp. MED92]
          Length = 674

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/719 (36%), Positives = 406/719 (56%), Gaps = 50/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SIEQ    L  L  ++++H+  YY    P + D+EYD L R    +    P+L      
Sbjct: 1   MSIEQ---HLQQLRDQLNHHNYQYYVLDDPEVPDAEYDRLFRELKKLESDNPELITE--- 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G     +  +V+H +P LSL+  +N ED+ +F  RI      ++  +I +  E
Sbjct: 55  DSPTQRVGSTPLSAFSQVSHELPMLSLDNAFNDEDMEEFDRRIKDRLNMQE--TISYACE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  +++ YE+G  V  A RGDG +GED++  +R IPTIP  L   N P+ +EVRGE
Sbjct: 113 PKLDGIAVSLLYEQGLLVRGATRGDGSTGEDITQNVRTIPTIPLKLTGDNFPDRLEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           +Y+ K  F ALND+  A G+K + NPRNAA+G LR+L+     +R L    + +G     
Sbjct: 173 IYMPKAGFDALNDKARATGQKTFVNPRNAAAGSLRQLDSRITASRPLEMCSYSVGVVEGG 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A    E+L +++  GF +N  +       G + YY  +  +R TLPY+IDG+V+KVD+
Sbjct: 233 ALAGKHSEILAQLKEWGFRLNPLLESVEGVAGCLDYYRRISELRDTLPYEIDGVVFKVDQ 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++LG  +R+PRW I+HKF  ++  T +  I+ Q+GRTG +TPVARLEPV +GG  +
Sbjct: 293 LELQQRLGFVSRAPRWAIAHKFPAQEELTSIRSIEFQVGRTGAVTPVARLEPVFVGGVTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L           D+R GD V+++RAG+VIP+VV ++  +R  D +  
Sbjct: 353 SNATLHNMDEIERL-----------DVRAGDTVVIRRAGDVIPQVVRVLHEKRPADTEAV 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CPIC+S++ R          A  RC+GGL C AQ+ E LKHF SR A +I+GLG 
Sbjct: 402 IIPDACPICESKIERIEGE------AVARCSGGLYCEAQRKEALKHFASRKAMDIDGLGD 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     +     +  PAD++ LQ+ +     ++      G  S  NL ++I   RN 
Sbjct: 456 KLIEMLVDLDM----VHNPADLYALQQTELARLERM------GPKSAENLVNAIQASRNT 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L RF+++LGIR VG   ARSLA ++L      +     +          + VP VG I+
Sbjct: 506 ELPRFLYALGIREVGEATARSLAMHFLDLPALIEASEEAL----------LEVPDVGPIV 555

Query: 609 AQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I  F+Q   NI  ++AL ++  VS S+   +   S  I  +  V TG L+++ R +A
Sbjct: 556 AKHIKSFFQQSHNIEVLDALREKAGVSWSVLETKDEESQPISGETWVLTGKLEQMGRSEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           + Y+ +LGA V+  +S KTD ++ G   GSKL+KA +LG+K M+E+ F+  L +    +
Sbjct: 616 KNYLLELGAKVAGSVSAKTDCVVAGPGAGSKLKKATELGIKTMDEDSFVSFLAEQGINI 674


>gi|149374973|ref|ZP_01892746.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
 gi|149360862|gb|EDM49313.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
          Length = 676

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/706 (35%), Positives = 392/706 (55%), Gaps = 45/706 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
               L   I+ H+  YY    P + D+EYD L R    +   +PD+     P+ P  ++G
Sbjct: 11  RAGELRDIITEHNYQYYVLDDPRVPDAEYDRLFRELQDLETQYPDIV---TPDTPTRRVG 67

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G +  +  +V H IP LSL+  ++ E+LR F  R+    +  DD  I +  EPK+DG  +
Sbjct: 68  GSVETTFEEVVHRIPMLSLDNAFSDEELRDFDRRVKDRLKTGDD--IEYVCEPKLDGLAV 125

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDF 198
           ++ YE G    AA RGDG++GED++A IR IP++P  L  + +PE++EVRGEVY+ +  F
Sbjct: 126 SLHYESGVLTRAATRGDGYTGEDITANIRTIPSVPLRLRGDKVPELVEVRGEVYMPREGF 185

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLG-KTSEIFAKGQYE 256
            ALN  +   G K + NPRNAA+G LR+  PT   R  L    + +  +   +     +E
Sbjct: 186 EALNRRLANKGEKTFVNPRNAAAGSLRQKKPTVTARRPLELCAYSVALEDESLLPATHWE 245

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ++   GF +N  +R+A      +  YNE+   R++LPY+IDG+V+KV+  +LQ+QLG
Sbjct: 246 GLQQVSAWGFRINPEMRRATGAEDCLQAYNELMGKRASLPYEIDGIVFKVNSLALQQQLG 305

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NATLHN 
Sbjct: 306 FVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATLHNM 365

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           D R+GD V V+RAG+VIP+VV ++   R  +A+    P  CP+
Sbjct: 366 DEIRRL-----------DARIGDTVFVRRAGDVIPQVVKVVAERRPANAREVELPDACPV 414

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS +V+      G++VA  RC+GGL C AQ+ E ++H+ SR A +IEGLG + +D    
Sbjct: 415 CQSDIVQ----IEGEVVA--RCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDILVD 468

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     +   AD++ L++   T   ++      G+ S  NL D+I++ R   L +F+++
Sbjct: 469 RE----LVNTVADLYLLKKADLTGLERM------GEKSAGNLIDAIDRSRKPVLWKFLYA 518

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A+ LA Y+ + ++ ++   + +            VP VG I+A  I  F+
Sbjct: 519 LGIREVGEATAKGLASYFGTLESISEADEDALQ----------SVPDVGPIVAGHIRSFF 568

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N   ++AL                  ++ +  V TG+L  + R  A+  +  LGA 
Sbjct: 569 DQTHNQETIQALKDAGVQWQAEEITASQKPLKGETWVLTGSLSGMTRDDAKSKLESLGAK 628

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           V+  +S KT  ++ G+  GSKL KA+ LGV +M+E  F+  L  + 
Sbjct: 629 VAGSVSGKTSCVVAGEAAGSKLTKAENLGVPVMDESAFVDFLATHG 674


>gi|153872826|ref|ZP_02001606.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
 gi|152070708|gb|EDN68394.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
          Length = 670

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/712 (35%), Positives = 393/712 (55%), Gaps = 48/712 (6%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++I  Q +++ + L   ++  +  YY   +P I DSEYD L R   A+   +P L  +  
Sbjct: 1   MTISIQIQQQATQLRDTLNKQNYYYYVLDEPRIPDSEYDKLMRELHALEENYPALITA-- 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++G +   +  +V H+IP LSL   ++ ++++ F  R+           + +  
Sbjct: 59  -DSPTQRVGAKPLTAFSEVIHTIPMLSLNNAFDDKEVQDFDKRVRERLG---GEPVEYVA 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189
           EPK+DG  I++RYE G  V AA RGDGH GEDV+  ++ I TIP R+L  + P ++EVRG
Sbjct: 115 EPKLDGLAISLRYENGLLVKAATRGDGHQGEDVTQNVKTIKTIPLRLLGDDYPRVLEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV++SK DF  LN +    G+K +ANPRNAA+G LR+L+     TR L F  + +G    
Sbjct: 175 EVFMSKADFEKLNQQQTLQGQKTFANPRNAAAGSLRQLDSRVTATRSLTFLAYTIGVVEG 234

Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   ++L  ++  G P++  +   +   G + YY      R  LP++IDG+VYKV+
Sbjct: 235 GELPHRHNKILYTLQKWGIPISIYIEMVHDIQGCLKYYQNTLLYREKLPFEIDGVVYKVN 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q+ LG  +R+PRW I+HK   ++  T +L ID+Q+GRTG LTPVARL PV +GG  
Sbjct: 295 SLEQQEILGFVSRAPRWAIAHKLPAQEVLTEVLAIDVQVGRTGALTPVARLAPVTVGGVT 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHN+D I             ++IRVGD V+V+RAG+VIP++V ++  +R  + QP
Sbjct: 355 VTNATLHNQDEIDR-----------KNIRVGDTVIVRRAGDVIPEIVGVLPEKRPNNTQP 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CPIC S V R          A  RCTGGL C+AQ+ + ++HF SR A +I+GLG
Sbjct: 404 FVLPKKCPICDSDVTRVEGE------AVARCTGGLYCAAQRKQAIQHFASRRAMDIDGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++    +E     ++  ADI+TL         +  N+   G  S  N+  ++ K ++
Sbjct: 458 EKLVEQLINNE----LVKNIADIYTLNH------EQWANLERMGPKSAENIIKALEKSQS 507

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +  +F+++LGIR VG   A +LA+ +   +         +           ++  +G I
Sbjct: 508 TTFAKFLYALGIREVGESTAHTLAQSFGRLEKLIPATEADLE----------QIQDIGPI 557

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666
           +A+ IV F+Q   N   ++ L +           + +   +  +  V TGTL  I RH+A
Sbjct: 558 VAKHIVTFFQQSHNREIIQRLQQIGIHWPENEPTSTNTQPLSGQTFVLTGTLTNITRHEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA VS  +S+KT  ++ G+  GSKLEKA+ LG+KI++E  FL LL
Sbjct: 618 KARLEALGAKVSGSVSKKTACVVAGEKAGSKLEKARTLGIKIIDENAFLALL 669


>gi|121587330|ref|ZP_01677101.1| DNA ligase [Vibrio cholerae 2740-80]
 gi|121730035|ref|ZP_01682446.1| DNA ligase [Vibrio cholerae V52]
 gi|147675693|ref|YP_001216443.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O395]
 gi|153818602|ref|ZP_01971269.1| DNA ligase [Vibrio cholerae NCTC 8457]
 gi|227081145|ref|YP_002809696.1| DNA ligase [Vibrio cholerae M66-2]
 gi|229505430|ref|ZP_04394940.1| DNA ligase [Vibrio cholerae BX 330286]
 gi|262167192|ref|ZP_06034905.1| DNA ligase [Vibrio cholerae RC27]
 gi|298498912|ref|ZP_07008719.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757]
 gi|190359299|sp|A5F2W3|DNLJ_VIBC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781449|sp|C3LTL9|DNLJ_VIBCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121548413|gb|EAX58473.1| DNA ligase [Vibrio cholerae 2740-80]
 gi|121628224|gb|EAX60744.1| DNA ligase [Vibrio cholerae V52]
 gi|126510828|gb|EAZ73422.1| DNA ligase [Vibrio cholerae NCTC 8457]
 gi|146317576|gb|ABQ22115.1| DNA ligase [Vibrio cholerae O395]
 gi|227009033|gb|ACP05245.1| DNA ligase [Vibrio cholerae M66-2]
 gi|227012788|gb|ACP08998.1| DNA ligase [Vibrio cholerae O395]
 gi|229357653|gb|EEO22570.1| DNA ligase [Vibrio cholerae BX 330286]
 gi|262024413|gb|EEY43101.1| DNA ligase [Vibrio cholerae RC27]
 gi|297543245|gb|EFH79295.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757]
          Length = 669

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+    Q    +   F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHS--AFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I  IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R  L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGDATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLLAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|13471538|ref|NP_103104.1| DNA ligase [Mesorhizobium loti MAFF303099]
 gi|75543387|sp|Q98KC4|DNLJ_RHILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|14022280|dbj|BAB48890.1| DNA ligase [Mesorhizobium loti MAFF303099]
          Length = 734

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/744 (40%), Positives = 440/744 (59%), Gaps = 35/744 (4%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M ++   P+++LS  +A  EL  L +EI+ HD  Y+    P I D+EYDAL+RR  AI  
Sbjct: 1   MAEK---PVDSLSESEAEAELKRLAEEIAGHDRRYHAEDAPTITDAEYDALRRRNLAIEE 57

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L R    + P  ++G        KV H++P LSL K +  ED+  FI R  RF+ +
Sbjct: 58  RFPGLVRE---DSPSRRVGAPPAEGFAKVRHAVPMLSLAKAYTDEDVTDFIERGRRFFDR 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL- 179
             D  I FT EPKIDG   ++RYE G FV  A RGDG  GED++A +R I  IP  L   
Sbjct: 115 DKDLDIAFTAEPKIDGLSASLRYENGVFVQGATRGDGAVGEDITANLRTIADIPAKLKGS 174

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
             P++IE+RGEVY++  +F AL     A G + Y NPRN A+G LR+ + +   +R L F
Sbjct: 175 GWPDVIEIRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKF 234

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +  G T+   A  QYE +QK    GF ++  + +A +   +V+ Y+ ++  RS+L YD
Sbjct: 235 FAYAWGFTTADPAPTQYESVQKFADWGFKISPLMVRAKSVEELVAQYHLIEEQRSSLGYD 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD+  LQ++ G     PRW ++HKF  +QA T +  IDIQ+GRTG L PVARL
Sbjct: 295 IDGVVYKVDQLELQRRWGFVTGEPRWAVAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARL 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG ++ N TLHNEDYIKG D++G  +R G D+R+GD V+++RAG+VIP++V +++
Sbjct: 355 APVTVGGVVVENVTLHNEDYIKGFDSNGLPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVI 414

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R  DA P+ FP  CP+C S   R++N KTGK  +  RCTG L C+AQ +ERL+HFVSR
Sbjct: 415 DKRPADAVPYEFPHTCPVCGSPATREINEKTGKEDSRRRCTGELICAAQAVERLRHFVSR 474

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ----QTSTTKIENILGFGDVS 534
            A +IEGLG + +D FF     A  I+  ADIFTL+ R+    +    + E      + +
Sbjct: 475 GALDIEGLGAENIDTFFN----AGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAA 530

Query: 535 V------------------TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                                L+ +I+ RR   L+RFIF+LGIRH+G   A  LAK + +
Sbjct: 531 SGKTRKNVRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLAKTFST 590

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +   + +    A   D       V  +GD +  A+ +F+ N RN   ++ LL++V P  
Sbjct: 591 IEELIR-VGKETAAAEDPHTVFPSVNGIGDTVIDALCDFFGNERNDDVLDKLLEQVKPKP 649

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
                +  SE+  K +VFTGTL+K+ R +A+    +LGA V+  +S KTD+++ G   GS
Sbjct: 650 YIVTVSADSEVAGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGS 709

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQ 720
           KL+ A +LGV++++E+ +L  + +
Sbjct: 710 KLKLASELGVEVIDEDTWLQRVGK 733


>gi|258627076|ref|ZP_05721872.1| DNA ligase [Vibrio mimicus VM603]
 gi|258580594|gb|EEW05547.1| DNA ligase [Vibrio mimicus VM603]
          Length = 670

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/712 (34%), Positives = 381/712 (53%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L  L Q +  H   YY    P I D+EYD L R    +  A P+L     P+ 
Sbjct: 1   MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H IP LSL+  ++  +L  F  R+             F  EPK
Sbjct: 58  PSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIP--AVQQSHFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+P  F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS + R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 405 PACCPVCQSEIERIEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVDGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDREM----VSTPADLFRLRTGELTILERM------GPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA+++L+    AQ   +           LI VP VG ++A 
Sbjct: 509 PRFLYALGIREVGEATALNLAQHFLTLDAIAQASMD----------QLIEVPDVGGVVAS 558

Query: 611 AIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+   RN   +  L+                  S +  K +V TG+  ++ R+ A+
Sbjct: 559 HLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALAGKVVVLTGSFTQLSRNDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E   +  L+
Sbjct: 619 AALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEHALIDFLK 670


>gi|149192011|ref|ZP_01870239.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1]
 gi|148834147|gb|EDL51156.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1]
          Length = 667

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/706 (36%), Positives = 393/706 (55%), Gaps = 47/706 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ L+ L++++ YH   YY    P I D EYD L +   AI    PD       + P  +
Sbjct: 3   QQRLNELKEQLHYHGVKYYVEDSPEIPDVEYDRLMQELLAIEAEHPDWVTV---DSPSQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG    S  +V H IP LSL+  ++ EDL  F  RI     + D     +  E K+DG 
Sbjct: 60  VGGLPLDSFTQVKHEIPMLSLDNAFSDEDLDSFNKRICDRVNRTDIG--AYCCEVKLDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            +++ YE G  V AA RGDG +GE+++  +R I  IP  L   +IP  IEVRGEV++ K 
Sbjct: 118 AVSLLYESGVLVQAATRGDGTTGENITENVRTISAIPLKLQGDDIPARIEVRGEVFMPKA 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254
            F  LN+     G K + NPRNAA+G LR+L+     TR L+F+ + LG           
Sbjct: 178 GFAKLNELAERKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSLGIVEGTELPASH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++   K++ LGFP+    ++ N+   + +Y+  ++  R  L Y+IDG+V KVD+ +LQ+Q
Sbjct: 238 FDRFLKLKSLGFPMGPETKRVNSIEEVKAYHKAIQEKRDELEYEIDGVVIKVDDIALQEQ 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I++KF  ++  T L  ++ Q+GRTG +TPVA+LEPV +GG  ++NATLH
Sbjct: 298 LGFVARAPRWAIAYKFPAQEEITVLNSVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            ++VGD V+++RAG+VIP++V  +   R  DA+   FPS C
Sbjct: 358 NADEIERL-----------GVKVGDSVIIRRAGDVIPQIVSYVPERRPADAKEIVFPSEC 406

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S + R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG++ ++  
Sbjct: 407 PVCASLIERIEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIEQL 460

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     +  PAD+F L   Q T   ++      G  S  N+ +++N  +  +L RF+
Sbjct: 461 VDKEM----VETPADLFKLSVGQLTILERM------GPKSAQNVVNALNVSKETTLARFL 510

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +SLGIR VG   A +L+ ++ + +N     ++           LI VP VG+I+A+ I  
Sbjct: 511 YSLGIREVGEATAANLSTHFETLENVMNATHD----------QLIEVPDVGEIVAKHIRF 560

Query: 615 FYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F+    N   +EAL+       ++    ++    +  K +V TG+L ++ R+ A+  +  
Sbjct: 561 FFAAESNQKVIEALIAAGIHWAAVEAPAEDTPQPLAGKTVVLTGSLSQLNRNDAKAALQA 620

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           LGA V+  +S+KTDI+  G+N GSKL KAQ+L ++I  E+  + L+
Sbjct: 621 LGAKVTGSVSKKTDILFAGENAGSKLAKAQELNIEIRTEDDLIELI 666


>gi|312900318|ref|ZP_07759629.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470]
 gi|311292506|gb|EFQ71062.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470]
          Length = 676

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/716 (33%), Positives = 390/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTL Y+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLTYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|119472555|ref|ZP_01614603.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
 gi|119444879|gb|EAW26179.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
          Length = 672

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/707 (34%), Positives = 386/707 (54%), Gaps = 45/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++++ L   +  H+  YY    P I D+EYD L R   A+    P+       + P  K+
Sbjct: 7   EQINHLRTLLEQHNYNYYVLDTPSIPDAEYDRLLRELSALETQNPEFL---SADSPTQKV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG       +V H +P LSL+  ++ ++   F  RI       D   + F  EPK+DG  
Sbjct: 64  GGAALSKFEQVAHQVPMLSLDNAFSEDEFTGFNRRIKERLMSID--ELTFCCEPKLDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++I Y  G  V AA RGDG +GE+++  ++ I  +P  L  + P+ +EVRGEV++    F
Sbjct: 122 VSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEVFMDSAGF 181

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQYE 256
             LN+E    G K + NPRNAA+G LR+L+      R L F+ +  G        +  ++
Sbjct: 182 EKLNNEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHFQ 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K+   G P+    +        + YY+++ + RS L Y+IDG+V KV++ +LQ++LG
Sbjct: 242 QLEKLTDWGLPLCPETKLVEGPQAALDYYDDILTRRSELKYEIDGVVIKVNKKALQERLG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++NATLHN 
Sbjct: 302 FVARAPRWAIAYKFPAQEEVTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNG 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L            ++VGD V+++RAG+VIP++  +++  R  DA+   FPS CPI
Sbjct: 362 DEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPTDARDIVFPSACPI 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V +          A  RCTGGL C AQ+ + +KHF SR A +I+GLG + +D    
Sbjct: 411 CDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLVD 464

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I+ PAD+F L++    S  ++      G  S  NL  ++N+ +  +L +F++S
Sbjct: 465 RE----LIKTPADLFILKQGHFESLERM------GPKSAKNLVTALNEAKATTLAKFLYS 514

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR  G   A++LA ++L+ +N            +    SL +V  VGDI+A  +  F+
Sbjct: 515 LGIREAGEATAQNLANHFLTLENI----------ISASVESLTQVSDVGDIVASHVRGFF 564

Query: 617 QNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
               N+  V AL+++ V              +     V TGTL  + R+ A+  + QLGA
Sbjct: 565 DEEHNLAVVNALIEQGVHWPALSAPSEDEQPLAGLTYVLTGTLNTLNRNDAKARLQQLGA 624

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            VS  +S KTD ++ G+  GSKL KAQ LG+ ++ E+  + LL+++N
Sbjct: 625 KVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEDGLIELLEKHN 671


>gi|257095174|ref|YP_003168815.1| NAD-dependent DNA ligase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047698|gb|ACV36886.1| DNA ligase, NAD-dependent [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 675

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/706 (37%), Positives = 384/706 (54%), Gaps = 46/706 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L SL  EI  +D  YY    P I D++YD L R   A+    P+L      + P  ++
Sbjct: 5   ERLHSLRAEIERYDHEYYVLDAPSIADADYDRLFRELQALEAEHPELVSR---DSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG        VTH+   LSL   +  +++  F  R+        D  + ++ EPK DG  
Sbjct: 62  GGAPLAEFAAVTHATAMLSLNNAFADDEVAAFDRRVREGLAT--DGEVDYSAEPKFDGLA 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197
           + + Y KG  V  A RGDG +GE+V+A +R + ++P  L   + P  +EVRGEV + ++D
Sbjct: 120 VGLSYAKGILVCGATRGDGSTGENVTANLRTLRSVPLRLRASDWPAALEVRGEVLMWRSD 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS-EIFAKGQY 255
           F  LN      G K + NPRNAA+G LR+L+P     R L FF +G+             
Sbjct: 180 FERLNARQREKGEKEFVNPRNAAAGGLRQLDPRITAQRPLRFFAYGIASGERAGLPATHS 239

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L ++   GFPV    R+     G+++YY +M S R++LPYDIDG+VYK+D+ + Q++L
Sbjct: 240 AQLDQLERWGFPVARERRRVTGLAGLLAYYADMGSRRASLPYDIDGVVYKLDDLAAQERL 299

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PR+ ++HKF  ++A T LLDI IQ+GRTG LTPVARL PV +GG  + NATLHN
Sbjct: 300 GFLSRAPRFAVAHKFPAEEAVTELLDISIQVGRTGALTPVARLAPVFVGGVTVNNATLHN 359

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED I+            +++R+GD V+V+RAG+VIP+VV ++ + R   A+ F  P+ CP
Sbjct: 360 EDEIRR-----------KNVRIGDVVVVRRAGDVIPEVVRVVPDRRPAGAREFVMPTSCP 408

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C SRVVR  +       A  RC+GGL C AQ+ + L HF SR A +IEGLG + ++   
Sbjct: 409 VCGSRVVRSADE------AVARCSGGLYCPAQRKQALLHFASRRALDIEGLGDKLVEQLV 462

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            S      +R P D++ L      S  ++       D S  NL  +I + +  +L RFIF
Sbjct: 463 DSAI----VRTPGDLYRLGLLALASLERMA------DKSAGNLLAAIERSKRTTLARFIF 512

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR+VG   AR LA+++ S                 D  SL +VP VG  +AQ+I +F
Sbjct: 513 ALGIRNVGEATARELARHFGSLDRLLAA----------DEDSLRQVPDVGPTVAQSIRQF 562

Query: 616 YQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
              P N+  +E L    +  S G            +  V TGTL  + R  A+  +   G
Sbjct: 563 CSEPHNLEVIEQLRAAGLVWSEGEPAVPAGGVFAGQVFVLTGTLPSLTREAAKAMIEAAG 622

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             VS  +S+KT  ++ G   GSKLE+A QLGV++++E Q L LL+Q
Sbjct: 623 GKVSGSVSKKTSFVVAGAEAGSKLERALQLGVQVIDEGQLLGLLEQ 668


>gi|229546559|ref|ZP_04435284.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322]
 gi|256854411|ref|ZP_05559775.1| DNA ligase [Enterococcus faecalis T8]
 gi|307274689|ref|ZP_07555861.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134]
 gi|307296388|ref|ZP_07576212.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411]
 gi|229308304|gb|EEN74291.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322]
 gi|256709971|gb|EEU25015.1| DNA ligase [Enterococcus faecalis T8]
 gi|306496043|gb|EFM65628.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411]
 gi|306508618|gb|EFM77716.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134]
 gi|315029103|gb|EFT41035.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4000]
 gi|315157732|gb|EFU01749.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0312]
 gi|323479918|gb|ADX79357.1| DNA ligase, NAD-dependent [Enterococcus faecalis 62]
          Length = 676

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 390/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  +
Sbjct: 295 FVLQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672


>gi|146277206|ref|YP_001167365.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025]
 gi|166216230|sp|A4WRP6|DNLJ_RHOS5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145555447|gb|ABP70060.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025]
          Length = 704

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/685 (43%), Positives = 424/685 (61%), Gaps = 17/685 (2%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+ +  P I D++YDALKRR  AI   FP L RS   + P  ++GG +     KV H + 
Sbjct: 33  YHTHDAPRISDADYDALKRRNRAIEERFPALRRS---DSPSERVGGALAEGFAKVRHEVR 89

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSLE  + + ++ ++I RI RF     D  + FT EPKIDG  +++RYEKG+ V AA R
Sbjct: 90  MLSLENAFELAEVEEWIERIRRFLGHVGD--LRFTAEPKIDGLSLSLRYEKGRLVQAATR 147

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG +GE+V+   R I  +P  L+   P+++EVRGEVY+   DF ALN+   A G++ +A
Sbjct: 148 GDGETGENVTENARTIGDLPTELT-GAPDLLEVRGEVYMRHADFAALNERQEATGQRLFA 206

Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+P    +R L+FF +  G  SE  A  Q   + ++  LGF  N   R
Sbjct: 207 NPRNAAAGSLRQLDPAVTASRPLHFFAYAWGAHSEPLADTQQGAIARLSALGFATNPLTR 266

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
                  ++++Y +++  R++L YDIDG+VYKVD+ +LQ++LG RA +PRW I+HKFA +
Sbjct: 267 LCTGPDELLAHYADIERQRASLGYDIDGVVYKVDDLALQRRLGFRASTPRWAIAHKFAAE 326

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
            A T+L  IDIQ+GRTG L+PVARL+PV +GG ++ NATLHNEDYI G D+ G+ +RGG+
Sbjct: 327 LAWTQLEGIDIQVGRTGALSPVARLKPVTVGGVVVANATLHNEDYIAGRDSKGQEIRGGK 386

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIRVGD V V RAG+VIPKV ++ ++ R   A+P+ FP  CP C S  +R+         
Sbjct: 387 DIRVGDWVQVYRAGDVIPKVAEVDLSRRPEGAEPYRFPDTCPDCGSAAIREPG------D 440

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
           +  RCTGGL C AQQ+ERLKHFVSR AF+IEGLG +Q++  ++       IR PADIF L
Sbjct: 441 SVRRCTGGLICPAQQVERLKHFVSRAAFDIEGLGARQVEALWRD----GWIRQPADIFEL 496

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
             R +    ++EN  G+G  S  NL  +I  RR I+L R IF+LGIRHVG   A  LA +
Sbjct: 497 PNRYRDGLQRLENREGWGRKSAENLLAAIEARRRIALHRLIFALGIRHVGETTATLLATH 556

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           Y S+  F   +         +W  L+ +  VG ++A ++V  +       A++AL   ++
Sbjct: 557 YGSWAAFEAAMTRAEVGTGSEWQDLLSIDGVGAVLATSLVTTFHQEAERAAIDALAAHLT 616

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                    V S I  K +VFTGTL+K+ R++A+     LGA VS  +S +TD+++ G  
Sbjct: 617 VEDAEMRAPVESPIAGKIVVFTGTLEKMSRNEAKARAEALGAKVSGSVSARTDLVVAGPG 676

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLL 718
            GSK ++A  LGV+ + E+ +L L+
Sbjct: 677 AGSKAKQAAALGVETIGEDAWLRLI 701


>gi|119774653|ref|YP_927393.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
 gi|166216239|sp|A1S5R7|DNLJ_SHEAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119767153|gb|ABL99723.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
          Length = 681

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 384/715 (53%), Gaps = 54/715 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I Q + E+  L  EI+ H+  YY    P I D+EYD L  +  A+   +P  A   +P+
Sbjct: 10  TIMQVKAEIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEYPQFA---EPD 66

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       +V+H  P LSL+  +N ED   F  R+      +      +  EP
Sbjct: 67  SPTQRVGGAALNKFEQVSHLKPMLSLDNAFNEEDFVAFDKRLTDKVGSQV-----YCAEP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           K+DG  +++ Y  G    AA RGDG  GED+S  +R I ++P  L   +IP ++EVRGEV
Sbjct: 122 KLDGLAVSLIYRNGVLERAATRGDGAVGEDISVNMRTIKSVPLRLQGDDIPALVEVRGEV 181

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-- 248
           ++ +  F ALND   A G K + NPRNAA+G LR+L+      R L F+ + LG   +  
Sbjct: 182 FMPRAAFEALNDRARAKGDKLFVNPRNAAAGSLRQLDSKITAERSLAFYAYALGVVQDDN 241

Query: 249 ----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
               + A      L+++   G PV+  V+       +++YY ++   R  L ++IDG+V 
Sbjct: 242 GADLVLAPTHKGQLERLTAFGLPVSKEVKLCEGLAEVMAYYADILKRRDELAFEIDGVVI 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++   Q+QLG  AR+PRW I+ KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 302 KVNDIEAQQQLGFVARAPRWAIAFKFPAQEEMTVLEGVDFQVGRTGAVTPVARLKPVFVG 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I  L            +++GD V+++RAG+VIP++V ++   R  +
Sbjct: 362 GVTVSNATLHNGDEIARL-----------GVKIGDTVIIRRAGDVIPQIVAVVPERRPDE 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           AQ   FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A  I+
Sbjct: 411 AQDILFPDNCPVCGSLVERIEGE------AVARCSGGLFCEAQRREAIKHFASRKAMYID 464

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     +  PAD+F L   + T   ++         S TNL  +I +
Sbjct: 465 GMGDKVVEQLIDKE----LVESPADLFKLNVSKLTMLERMGT------KSATNLVAAIEE 514

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L +F+++LGIR VG   A +LAK++ S +          A  + D  +LI+V  V
Sbjct: 515 AKTTTLPKFLYALGIREVGEATAANLAKHFRSLE----------AIRDADVDALIQVEDV 564

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663
           G ++AQ +  F+  P N+  ++AL+          + +     +  +  V TGTL  + R
Sbjct: 565 GTVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIEKPSADAQPLLGQTWVLTGTLTSLGR 624

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+  +  LGA V+  +S+ T  ++ G+  GSKL KAQ+LG+ +++E   + L+
Sbjct: 625 TEAKAKLEALGAKVAGSVSKNTHCVVAGEAAGSKLAKAQELGIPVLDEAGLIELI 679


>gi|78485583|ref|YP_391508.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2]
 gi|123741582|sp|Q31G89|DNLJ_THICR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78363869|gb|ABB41834.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2]
          Length = 672

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/713 (37%), Positives = 404/713 (56%), Gaps = 48/713 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           Q +K    L + ++ H   YY    PII D +YD L ++   I    PD      P  P 
Sbjct: 2   QDQKAYQKLVESLNQHSYQYYVLDDPIISDPQYDVLYQKLLRIEDEHPDWIL---PESPS 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            +IG E       V H++P  SL+  +  ++L+ F+ RI       D  S+ F+ EPK+D
Sbjct: 59  QRIGDEPLKEFHTVRHAVPMYSLDNAFEDDELKSFLKRIEEKLP--DQKSLAFSAEPKMD 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  I IRYE G+ V A  RGDG  GEDV+  IR I ++P  L   N PE++EVRGEV++S
Sbjct: 117 GLAINIRYENGQLVQATTRGDGQVGEDVTHNIRPIYSVPLKLFGNNWPEVVEVRGEVFMS 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           K+ F  LN+    +G K +ANPRNAA+G LR+L+      R+L+FF++G G+ S+ +   
Sbjct: 177 KSAFEQLNEHQQEIGGKIFANPRNAAAGSLRQLDSKVAAKRHLSFFLYGWGELSDDWQLP 236

Query: 254 QY--EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           QY  EM++++   G P N      +   G+ +YY ++++ RS LPY+IDG+VYK+++  L
Sbjct: 237 QYYSEMIEQLVEWGLPANPQSEIISGLEGMFAYYEKIQAKRSELPYEIDGIVYKLNDIKL 296

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  AR+PRW I+ KF  ++  T+LLDI++Q+GRTG +TPVARL+PV++GG +++NA
Sbjct: 297 QQQLGFTARAPRWAIARKFPAEEVWTKLLDIEVQVGRTGAITPVARLQPVSVGGVIVSNA 356

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D IK            +D+R+GD V+V+RAG+VIP+VV  I+ +R  + Q F  P
Sbjct: 357 TLHNMDEIKR-----------KDVRIGDTVIVRRAGDVIPEVVGPILTQRPENTQLFEMP 405

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S VV++L+       A  RCTGGL C AQ+   L HFVSR A +I+GLG + +
Sbjct: 406 QHCPECGSDVVKELDK------AVFRCTGGLVCPAQRKRALHHFVSRKAMDIQGLGDKLI 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D           ++ P D + L   +  +  ++       + S  N+   I      +L 
Sbjct: 460 DQLVDK----GWVKHPDDFYHLTVEKLATLERMA------EKSAQNVITGIQASLETTLA 509

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +FI+SLGI  VG   A++LA ++       Q           ++  LI +  VG+++A+ 
Sbjct: 510 KFIYSLGIPEVGEVTAKNLANHFKDLNAIKQA----------EFEELITLNDVGEVVAEH 559

Query: 612 IVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           IV F++ P N   ++         P+      N  S   NK +V TGTL ++ R +A+  
Sbjct: 560 IVNFFKEPHNESVIQGLLDAGMHWPTPETTLVNEDSPFANKVVVLTGTLSEMSRPEAKVL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +   GA ++  +S KTD +I G+  GSKL KA+ LGV +++E ++L ++ Q +
Sbjct: 620 LEAQGAKITGSVSAKTDYVIAGEKAGSKLTKAESLGVAVLSEAEWLAMMPQQD 672


>gi|91205008|ref|YP_537363.1| NAD-dependent DNA ligase LigA [Rickettsia bellii RML369-C]
 gi|122990942|sp|Q1RK40|DNLJ_RICBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91068552|gb|ABE04274.1| DNA ligase, NAD-dependent [Rickettsia bellii RML369-C]
          Length = 689

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/713 (39%), Positives = 430/713 (60%), Gaps = 29/713 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE ++ E+A+K L  L  +I+ ++  YY   KP++ D+EYD L      +   FP L   
Sbjct: 4   IEKINEEEAKKLLIELADKIAQYNHAYYIEDKPLVSDAEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  KIG ++     KVTH +P LSL  +++ ED++ F+ RI  F +    + IF 
Sbjct: 64  ---NSPSKKIGAKVENKFAKVTHQVPMLSLSNVFDEEDVKDFLDRIKSFLRLDQFSPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG      Y+ G     A RGDG+ GED++A I+ I   P  ++ N PE++EVR
Sbjct: 120 -CEPKIDGLSFAATYKNGILTTGATRGDGYIGEDITANIKTIKDFPHKIN-NAPELLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI KNDF +LN E    G+  +ANPRNAA+G LR+L+P+    R L +FV+ +G   
Sbjct: 178 GEIYIEKNDFTSLNQEQEQQGKDKFANPRNAAAGSLRQLDPSVTAKRPLKYFVYAIGSAK 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E  A  Q ++L K + LGF VN   + AN+   I S+Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 EELANSQDQLLAKFKELGFNVNEIGKLANSEEEIFSFYEYLKTNRKNLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG +
Sbjct: 298 DFALQDRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVI 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+RVGD V ++RAG+VIP++  + + +R  DA  
Sbjct: 358 VSRATLHNYQEIAR-----------KDVRVGDYVFLQRAGDVIPQITGVDLAKRSADATT 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FCP C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDPPLFCPSCNSKLHYVPEDI------IIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ + + S TK+EN+ G+G  SV NL+++I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPYDIFFLKEKNEASLTKLENMDGWGKKSVENLFNNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ L + + SY+NF  ++  +  ++ + +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLTREFGSYENFIAQMELLKENDPEIYQKLNNLDGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +   I++F+    NI  ++ L + ++      E    S +  K +VFTG++  + R +A+
Sbjct: 577 MLVDIIDFFDVKENIELIKNLSEVLNIE-DYKETREQSSLTGKIVVFTGSMPTLSRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               +LGA V+A +S  TD++I G++ GSKL+KA++LG+KI++E ++L L++ 
Sbjct: 636 ATAEKLGAKVAASVSSNTDLVIAGEDAGSKLKKAKELGIKIIDEAEWLTLVRD 688


>gi|33151983|ref|NP_873336.1| NAD-dependent DNA ligase LigA [Haemophilus ducreyi 35000HP]
 gi|81423646|sp|Q7VMX7|DNLJ_HAEDU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33148205|gb|AAP95725.1| DNA ligase [Haemophilus ducreyi 35000HP]
          Length = 686

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/707 (35%), Positives = 401/707 (56%), Gaps = 47/707 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L  ++  ++  Y+  + P++ D+EYD L  +   I   +P+L     P+ P  ++G
Sbjct: 17  QLEALRDQLREYEYHYHVLNNPLVPDAEYDRLINQLKNIEQQYPELI---TPDSPTQRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +V H +P LSL+  ++  DL  F+ RI  +    D N + F  EPK+DG  +
Sbjct: 74  AKPLAGFAQVAHEMPMLSLDNAFSETDLDNFLRRIENYLSL-DANQLTFCCEPKLDGLAV 132

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GE+++A +R I  IP  L   N P  +E+RGE+++    F
Sbjct: 133 SILYIDGVLQLAATRGDGTTGENITANVRTIRNIPLKLKMANPPHRLEIRGEIFMPLKGF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS---EIFAKGQ 254
            ALN   +A G K +ANPRNAA+G LR+L+P     R L    +G+G      +      
Sbjct: 193 NALNQRALAKGEKSFANPRNAAAGSLRQLDPQITRQRPLMLNAYGIGVYESNYQRLPTSH 252

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y  L+ ++ +G PVN  +R A  +  ++++Y ++++ R+ L YDIDG V KVD+ ++Q+ 
Sbjct: 253 YARLEWLKSIGIPVNAEIRLARGYPQLLAFYADIQAKRADLGYDIDGTVLKVDDITIQET 312

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP  + G  ++NATLH
Sbjct: 313 LGFISRSPRWAIAYKFPAQEEMTILKDVEFQVGRTGAITPVAKLEPTLVAGVTVSNATLH 372

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            + +GD V+++RAG+VIP+++ I+ + R  +A+   FP+ C
Sbjct: 373 NGDEIERL-----------GVAIGDTVIIRRAGDVIPQIIGIVADRRPANAKKIVFPTAC 421

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V+R          A  RCTGGL C AQ+ E LKHFVSR A NI+G+G++ ++  
Sbjct: 422 PVCHSAVIRIAGE------AVARCTGGLFCPAQRKEALKHFVSRKAMNIDGVGEKLIEQL 475

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     I  PAD+F L         ++      G+ S  N  +SI K ++ +L RF+
Sbjct: 476 MARE----LIHTPADLFKLDPLSLMRLERM------GEKSAQNALNSIEKAKHTTLARFL 525

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           FSLGIR VG   A +LA ++ S +N              +   L  V  VG+++A  +V 
Sbjct: 526 FSLGIRDVGETTALNLANHFGSLENIRTA----------NVEQLKEVQDVGEVVANRLVC 575

Query: 615 FYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q   N+  VE L+ + V        +   + +++K +V TGTL +  R +A++ + QL
Sbjct: 576 FWQEQHNVAVVEELIAQGVHWDNIVQLEIADNPLKDKNVVLTGTLTQFSRDQARKLLQQL 635

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS+ +S KTD +I G+  G+KL KA+QLG++I++E  F  L++Q
Sbjct: 636 GCKVSSAVSTKTDFLIAGEKAGTKLTKAEQLGIRILDEHAFADLIKQ 682


>gi|315145225|gb|EFT89241.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2141]
          Length = 676

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/716 (34%), Positives = 390/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + SY  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G   
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTG 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|261211985|ref|ZP_05926271.1| DNA ligase [Vibrio sp. RC341]
 gi|260838593|gb|EEX65244.1| DNA ligase [Vibrio sp. RC341]
          Length = 670

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 381/712 (53%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L Q +  H   YY    P I D+EYD L R    I    P+      P+ 
Sbjct: 1   MSNVEQRLTELRQTLHEHGIRYYVEDAPTIPDAEYDRLMRELLDIEAQHPEWI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H IP LSL+  ++  +L  F  R+             F  EPK
Sbjct: 58  PSLRVGGRPLDGFDSVIHEIPMLSLDNAFDDAELESFYRRMTDRIP--AVQQSHFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPRRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G     + 
Sbjct: 176 MPKAGFDALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIEGGML 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   +  +Y ++   R  L Y+IDG+V KVD+ +
Sbjct: 236 ASSHYQRFLQLKSWGLPICPETKLVASLSEVKDFYQDILQRRGALAYEIDGVVIKVDDIT 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPVDAKTILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS + R          A  RCTGGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTHCPVCQSDIERIEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+  + T   ++      G  S  N+ D+++K +  +L
Sbjct: 459 IEQLVDREM----VATPADLFRLRAGELTILERM------GPKSAQNVIDALHKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++L+ +  AQ               LI V  VG+++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLTLEAIAQATME----------QLIEVSDVGNVVAG 558

Query: 611 AIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+   RN   +  L++                 S +  K +V TG+  ++ R+ A+
Sbjct: 559 HLHAFFAQSRNQKVIAELIELGVTWPAMAAISSTEADSVLAGKVVVLTGSFNQLSRNDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+ TDI+  G+  GSKL KA +LGV +M+E+  + LL+
Sbjct: 619 AALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGVAVMDEQALIELLK 670


>gi|307269776|ref|ZP_07551106.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248]
 gi|306513886|gb|EFM82488.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248]
          Length = 676

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 390/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G   
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTG 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672


>gi|157827661|ref|YP_001496725.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389]
 gi|166216232|sp|A8GXT8|DNLJ_RICB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157802965|gb|ABV79688.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389]
          Length = 689

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/713 (39%), Positives = 430/713 (60%), Gaps = 29/713 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE ++ E+A+K L  L  +I+ ++  YY   KP++ D+EYD L      +   FP L   
Sbjct: 4   IEKINEEEAKKLLIELADKIAQYNHAYYIEDKPLVSDAEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  KIG ++     KVTH +P LSL  +++ ED++ F+ RI  F +    + IF 
Sbjct: 64  ---NSPSKKIGAKVENKFAKVTHQVPMLSLSNVFDEEDVKDFLDRIKSFLRLDQFSPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG      Y+ G     A RGDG+ GED++A I+ I   P  ++ N PE++EVR
Sbjct: 120 -CEPKIDGLSFAATYKNGILTTGATRGDGYIGEDITANIKTIKDFPHKIN-NAPELLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI KNDF +LN E    G+  +ANPRNAA+G LR+L+P+    R L +FV+ +G   
Sbjct: 178 GEIYIEKNDFTSLNQEQEQQGKDKFANPRNAAAGSLRQLDPSVTAKRPLKYFVYAIGSAK 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E  A  Q ++L K + LGF VN   + AN+   I S+Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 EELANSQDQLLAKFKELGFNVNEIGKLANSEEEIFSFYEYLKTNRKNLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG +
Sbjct: 298 DFALQDRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVI 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+RVGD V ++RAG+VIP++  + + +R  DA  
Sbjct: 358 VSRATLHNYQEIAR-----------KDVRVGDYVFLQRAGDVIPQITGVDLAKRSADATT 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FCP C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDPPLFCPSCNSKLHYVPEDI------IIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ + + S TK+EN+ G+G  SV NL+++I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPYDIFFLKEKNEASLTKLENMDGWGKKSVENLFNNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G +  + LA+ + SY+NF  ++  +  ++ + +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNVKLLAREFGSYENFIAQMELLKENDPEIYQKLNNLDGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +   I++F+    NI  ++ L + ++      E    S +  K +VFTG++  + R +A+
Sbjct: 577 MLVDIIDFFDVKENIELIKNLSEVLNIE-DYKETREQSSLTGKIVVFTGSMPTLSRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               +LGA V+A +S  TD++I G++ GSKL+KA++LG+KI++E ++L L++ 
Sbjct: 636 ATAEKLGAKVAASVSSNTDLVIAGEDAGSKLKKAKELGIKIIDEAEWLTLVRD 688


>gi|332766219|gb|EGJ96429.1| DNA ligase, NAD-dependent [Shigella flexneri 2930-71]
          Length = 647

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/686 (34%), Positives = 381/686 (55%), Gaps = 48/686 (6%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
             P I D+EYD L R    +    P+L     P+ P  ++G     +  ++ H +P LSL
Sbjct: 2   DAPEIPDAEYDRLMRELRELETKHPELI---TPDSPTQRVGAAPLAAFSQIRHEVPMLSL 58

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E    F  R+    +  ++  + +  E K+DG  ++I YE G  V AA RGDG 
Sbjct: 59  DNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGT 116

Query: 159 SGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPR 217
           +GED+++ +R I  IP  L   NIP  +EVRGEV++ +  F  +N++    G K +ANPR
Sbjct: 117 TGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPR 176

Query: 218 NAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQA 275
           NAA+G LR+L+P     R L FF +G+G              L + +  G PV++ V   
Sbjct: 177 NAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGVPVSDRVTLC 236

Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
            +   ++++Y++++  R TL +DIDG+V KV+    Q+QLG  AR+PRW ++ KF  ++ 
Sbjct: 237 ESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQEQ 296

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            T + D++ Q+GRTG +TPVARLEPV++ G L++NATLHN D I+ L            +
Sbjct: 297 MTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERL-----------GL 345

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           R+GD+V+++RAG+VIP+VV+++++ER  D +   FP+ CP+C S V R          A 
Sbjct: 346 RIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGE------AV 399

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR 515
            RCTGGL C AQ+ E LKHFVSR A +++G+G + +D   + E     +  PAD+F L  
Sbjct: 400 ARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKE----YVHTPADLFKLTA 455

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
            + T   ++      G     N+ +++ K +  +  RF+++LGIR VG   A  LA Y+ 
Sbjct: 456 GKLTGLERM------GPKLAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFG 509

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE---ALLKEV 632
           + +          A        L +VP VG ++A  +  F+    N   +    A     
Sbjct: 510 TLE----------ALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHW 559

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
              I  + + + S    K +V TG+L ++ R  A+  + +LGA V+  +S+KTD++I G+
Sbjct: 560 PAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGE 619

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLL 718
             GSKL KAQ+LG+++++E + L LL
Sbjct: 620 AAGSKLAKAQELGIEVIDEAEMLRLL 645


>gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase [Herbaspirillum seropedicae SmR1]
 gi|300074267|gb|ADJ63666.1| NAD-dependent DNA ligase (contains BRCT domain type II) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 688

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/703 (34%), Positives = 381/703 (54%), Gaps = 47/703 (6%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L  +++ H+  YY   +P I D+EYD L +   A+  A P+L     P+ P  ++G   
Sbjct: 24  ALRADLNRHNYSYYVLDQPSIPDAEYDRLFQELQALETAHPELL---TPDSPTQRVGAGP 80

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                 V H IP LSL   ++ +D+  F  R+    +      + +  E K DG  I++R
Sbjct: 81  LPQFEPVRHDIPMLSLGNGFSDDDIEAFDKRVRDGLETL--QEVRYATELKFDGLAISLR 138

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLAL 201
           YE G  V AA RGDG +GE+V+A IR +  IP  L    IP++++VRGEV + K+DF  L
Sbjct: 139 YENGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGEAIPQLLDVRGEVLMYKDDFARL 198

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQYEMLQ 259
           N      G+K +ANPRNAA+G LR+L+      R L FF +G+G             +L 
Sbjct: 199 NQRQRDAGQKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYGIGVLEGADMPSSHSALLD 258

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
             + LG PV           G++ ++  + + R +LPY+IDG+VYKVD    QKQLG  +
Sbjct: 259 WYQQLGLPVCKERAVVTGATGLLEFFRGIGAKRESLPYEIDGVVYKVDRLDQQKQLGFVS 318

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R+PR+ ++HKF  ++A T + DI++Q+GRTG +TPVARL PV +GG  +TNATLHNED +
Sbjct: 319 RAPRFALAHKFPAQEALTVVQDIEVQVGRTGAITPVARLNPVFVGGVTVTNATLHNEDEV 378

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           +            +DI++GD V+V+RAG+VIP+VV  +  +R  DA+ F  P+ CP+C S
Sbjct: 379 RR-----------KDIQIGDTVIVRRAGDVIPEVVAYVPEKRPADARAFVMPAACPVCGS 427

Query: 440 RVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            +VR  +       A  RC+GG L CSAQ+   L+HF SR A +IEGLG+Q ++     +
Sbjct: 428 PIVRAEDE------AVARCSGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLVDRK 481

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                +  PAD++ L        + +  +    + S  N+ D++ K ++ +L RFI++LG
Sbjct: 482 ----VVNTPADLYRL------GLSALAELDRMAEKSAQNVLDALQKSKSTTLARFIYALG 531

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG   A+ LA+++                       L+ V  VG ++A +I  F+ +
Sbjct: 532 IRHVGEATAKELARHFGGLDKILAASEA----------QLLEVADVGPVVATSIRSFFDD 581

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             N+  VE L               +++ +  K  V TGTL  + R +A + +   G  V
Sbjct: 582 ALNVELVEQLRAVGVHWPESAGVEAAAKHLAGKTFVLTGTLPNLSRDEASQLIEAAGGKV 641

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +S+KT  ++ G   GSKL KA++LG+ I++E+    L  +
Sbjct: 642 TGSVSKKTTYVVAGAEAGSKLAKAEELGIAILDEDGLKALCAE 684


>gi|220931078|ref|YP_002507986.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168]
 gi|254781343|sp|B8D122|DNLJ_HALOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219992388|gb|ACL68991.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168]
          Length = 670

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/714 (35%), Positives = 387/714 (54%), Gaps = 49/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +  +E+  L ++I YH+  YY    P I D+E+D L +R   +    P L     P+ 
Sbjct: 2   ASKVEQEIRDLREKIRYHEYRYYVLDDPEISDAEFDELIQRLIDLEEKHPGLV---TPDS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE      KV H +P LSL   +N  DL  F  RIYR     D   I F +E K
Sbjct: 59  PTQRVGGEPLDKFDKVEHRVPMLSLGNAFNEGDLTNFARRIYRLL---DTGKIDFVVEHK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG    + Y+ G+ +  A RG+G  GEDV+A I+ IP++P  L  ++   IEVRGEVYI
Sbjct: 116 IDGLSAILTYQGGRLIRGATRGNGVVGEDVTANIKTIPSVPLRLKKDV--DIEVRGEVYI 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K+DF  LN+  +  G +P+ANPRNAA+G +R+L+P     R L+F  + +        +
Sbjct: 174 KKDDFSKLNERRLKKGEEPFANPRNAAAGSIRQLDPRLAAARPLSFIAYDVVAYEGEGLQ 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
                L+ +R LGF VN   R+ +    +V+   +    R  LP++IDG+V KV+E  L+
Sbjct: 234 THVGALELLRELGFKVN-WYRKCDDITEVVNICKDWVDKREELPFEIDGMVIKVNELGLR 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  A+SPRW I++KF  +Q +T + DI I +GRTG LTP A LEPV + G+ ++ AT
Sbjct: 293 EQLGATAKSPRWAIAYKFPAQQKTTVVKDIIISVGRTGALTPTAVLEPVEVDGSTVSRAT 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I+            +D+R+GD VLV++AG+VIP+VV +I ++R    Q F  P 
Sbjct: 353 LHNEDEIRR-----------KDVRIGDHVLVQKAGDVIPEVVKVIKSKRDGSEQIFHMPE 401

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   VVR+         A  RC     C AQ+ E + HFVSR+A NI+G+G   +D
Sbjct: 402 TCPACGGEVVREEGE------AVLRCVNVTGCPAQRREGILHFVSRNAMNIDGVGPALID 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +       I   AD++ L++       ++      G+ S TN  ++I   ++  L R
Sbjct: 456 QLLEK----GLIEDYADLYYLKKEDLIPLERM------GEKSATNAIEAIRASKDRPLFR 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIRHVG  +AR L + Y S  +  +     +          + +  +G  IA++I
Sbjct: 506 VIFALGIRHVGLGVARVLTEKYRSLSDLMRASGEEL----------VAIDEIGPTIARSI 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYV 670
           +EF++ P N   +  L +       +          +  K  VFTG L    R +A++ V
Sbjct: 556 IEFFKEPHNREVINKLKEAGVRLEEKENGKEEQNLYLSGKTFVFTGKLDGFTRSEARDKV 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
              G  V++ +SRKTD ++VGD+PGSK +KA++LGV I++E++F  +L+  +  
Sbjct: 616 IAAGGKVTSSVSRKTDYVVVGDSPGSKYDKARELGVTILDEDKFKEVLKAGDNN 669


>gi|229194680|ref|ZP_04321473.1| DNA ligase [Bacillus cereus m1293]
 gi|228588783|gb|EEK46808.1| DNA ligase [Bacillus cereus m1293]
          Length = 669

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/715 (34%), Positives = 390/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +EVRGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|163760776|ref|ZP_02167856.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43]
 gi|162282098|gb|EDQ32389.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43]
          Length = 739

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/720 (40%), Positives = 433/720 (60%), Gaps = 23/720 (3%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
            +   PIEALS  +A+ EL  L  EI+ HD+ Y++   PI+ D+EYDA KRR  AI   F
Sbjct: 38  TQDTKPIEALSEAEAKAELDRLAAEIARHDEAYHRKDAPIVSDAEYDAFKRRNLAIEERF 97

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P L  +   + P  K+G  +     K+TH +  LSLE  ++ ED R F+ R+ RF     
Sbjct: 98  PHLRLA---DSPSLKVGAPVAEGFGKITHKVAMLSLENAFSDEDARDFVNRVKRFLNLTP 154

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNI 181
            + +  T EPKIDG  +++RYE G  V AA RGDG +GE+V+A  R I  IP  L   ++
Sbjct: 155 FDELALTAEPKIDGLSLSLRYENGTLVSAATRGDGATGENVTANARTISDIPHQLAGEDV 214

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240
           PE+IEVRGEVY++K DF+ALN    A G++ Y NPRN A+G LR+L+P     R L FF 
Sbjct: 215 PEVIEVRGEVYMTKADFMALNARQAAAGKQTYVNPRNTAAGSLRQLDPKITAERPLRFFA 274

Query: 241 HGLGKT-SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           +  G+    +    Q EM+      GF VN  + +  +   ++++Y  +++ R+ LPYDI
Sbjct: 275 YAWGEVLPSLPYPTQSEMVAAFARWGFAVNPLMARVTSAEALIAHYRLIEAERAGLPYDI 334

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD+  LQ++LG  +RSPRW I+HKF  ++AST L  IDIQ+GRTG LTPVARLE
Sbjct: 335 DGVVYKVDDLGLQRRLGFVSRSPRWAIAHKFPAEKASTLLTAIDIQVGRTGALTPVARLE 394

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++TNATLHN + I+ L            +R+GD V ++RAG+VIP+V+ ++ +
Sbjct: 395 PVTVGGVVVTNATLHNAEEIERL-----------GVRIGDTVQIQRAGDVIPQVLGVVSS 443

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
               DA  F+FPS CP      V       G      RC+G  AC  Q+ E LKHFVSR 
Sbjct: 444 --PEDAVAFAFPSICPCDLKTPVIREETAGGVEGVVRRCSGEFACPFQRKEHLKHFVSRK 501

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT-STTKIENILGFGDVSVTNL 538
           AF+I+GLG++Q++FF++ +     I  PADIFTL+ R +     +++N  G+GD S   L
Sbjct: 502 AFDIDGLGEKQIEFFYEDKT--LPINQPADIFTLKMRDEANGLQRLKNRDGYGDTSAQKL 559

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +D+I  +R ++LER IFSLGIRHVG + A++LA+ Y  +         I   ++     +
Sbjct: 560 FDAIEAKREVALERLIFSLGIRHVGEQTAKTLARAYGDWTTLHAAALAIADGDSAAVEEM 619

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  +G  + +AI  F+    NI  V+ L+ +++  +   +    S +    +VFTG+L
Sbjct: 620 DALDDIGPAVVEAIGRFFGEDHNIAMVDNLVSQLTV-LDAEKPAQDSPVAGLTVVFTGSL 678

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R +A+    +LGA V+  +S+KTDI++ G   GSKL KAQ LGV+ M+E+ +  L+
Sbjct: 679 EKMTRDEAKAMAERLGAKVAGSVSKKTDILVAGPGAGSKLTKAQGLGVRTMDEDGWFELV 738


>gi|289522353|ref|ZP_06439207.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504189|gb|EFD25353.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 674

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/709 (36%), Positives = 397/709 (55%), Gaps = 46/709 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A+K    L +EI  H+  YY    P+I D EYDAL R    +   FP++     P+ P 
Sbjct: 7   EAKKRAEELRKEIEKHNYYYYVLDSPVITDEEYDALYRGLVELERRFPEII---TPDSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG+      KV H IP LS++ ++  E+L+ F++R+YR  ++     + FT E K+D
Sbjct: 64  QRVGGKPKEEFRKVVHEIPMLSMDNVFTQEELQSFVSRVYRILER----EVDFTTELKVD 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YE G+FV  A RGDG  GEDV+  +R I ++P  L   +P  +EVRGEVY++K
Sbjct: 120 GIAVSLVYEDGRFVLGATRGDGRVGEDVTENLRTIKSLPLRLMEPLPGRLEVRGEVYMTK 179

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF +LN      G   +ANPRNAA+G LR+L+P     R L  FV+ +    E     Q
Sbjct: 180 EDFASLNRSREEDGEPLFANPRNAAAGSLRQLDPNVTAQRRLRIFVYQVVHPEEYGLFSQ 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +++L  +R  GFP     R    F  + +Y  E K  R +L Y  DG+V KVD+ +  +Q
Sbjct: 240 FQVLSWLRNKGFPTQGNERLCKNFEELWNYIEEWKEKRHSLAYATDGVVVKVDDLTAYEQ 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A++PRW I+ K+  ++  TRLL I++ +GRTG LTPVA LEPV + G ++  A+LH
Sbjct: 300 LGTTAKAPRWQIAFKYPAEEQRTRLLRIEVSVGRTGALTPVAILEPVRLAGTVVQRASLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED IK L           D+RVGD V V++AGE+IP+VV +  + R    +PF+ P  C
Sbjct: 360 NEDEIKRL-----------DVRVGDYVYVRKAGEIIPEVVRVDYSARTGQERPFAIPENC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C + VVR +         A+RC    +C AQ  E +KHF SRDA +I+GLG++ ++  
Sbjct: 409 PVCGATVVRLVGE------VAYRCPNK-SCPAQIKESIKHFASRDAMDIKGLGEKIIEQL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +         AD++ L++    S  ++      G  S   L ++IN  +N  L R I
Sbjct: 462 VDKKMIGGF----ADLYKLKKEDLISLDRM------GPKSAEKLINAINSSKNRPLSRLI 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR+VG+  A  LA+ + S  N A+           D   L  +P +G  IA +IV 
Sbjct: 512 YALGIRYVGSRTAEILAERFKSMDNLAKA----------DIQDLSDIPGIGPQIASSIVA 561

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+++ +N+  ++ L +          +      E  K+VFTG L+K  R++A+  V  LG
Sbjct: 562 FFRDEKNLATIKDLARCGIKMAEEESERQEGPWEGWKIVFTGELEKATRNEAENIVKYLG 621

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           A+ S+ +SR    +++G NPGSKL KAQ+LGVKI++E+ F  L+ +  +
Sbjct: 622 AIPSSSVSRNVAFVVIGRNPGSKLAKAQELGVKIVDEQTFWKLVDEAKS 670


>gi|117927902|ref|YP_872453.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B]
 gi|166215382|sp|A0LSQ7|DNLJ_ACIC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117648365|gb|ABK52467.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B]
          Length = 695

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/729 (33%), Positives = 376/729 (51%), Gaps = 43/729 (5%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   +   I A S   A +  + L +EI  H   YY    P I D+EYDAL R  + I +
Sbjct: 1   MSPARNTGIPA-SAADAARRHAELVKEIEEHAYRYYVLDAPTISDAEYDALMRELEEIEN 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A+P+L     P+ P  K+ G        V H    LSL+ ++   +LR +I R+ +    
Sbjct: 60  AYPEL---RTPDSPTQKVQGAPAAHFAPVEHLERMLSLDNVFTEGELRAWIARVEKEVGT 116

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--S 178
                  +  EPK+DG  + + YE G  V  A RGDG  GEDV+A I+AI  +P  L   
Sbjct: 117 ----DAAYLCEPKVDGLAVDLVYEDGVLVRGATRGDGRVGEDVTANIKAIRNVPHRLHRD 172

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
            N+P ++EVRGEVY    DF  LN  ++A G+ P+ANPRNAA+G LR+ +P    +R L 
Sbjct: 173 GNLPALLEVRGEVYFPVADFAELNAGLVAAGKAPFANPRNAAAGSLRQKDPRVTASRPLR 232

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
             VHG+G    + A  Q E    +   G PV+   + A T   I+ Y       R  L +
Sbjct: 233 LVVHGIGAHQGLAAARQSEAYVALAAWGLPVSERAKVATTTKEILDYIAYYAEHRHDLEH 292

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KVD+F+LQ++LG  A++PRW +++K+  ++ +T+LLDI + +GRTG +TP A 
Sbjct: 293 EIDGVVVKVDQFALQRRLGATAKAPRWAVAYKYPPEEVTTKLLDIQVNVGRTGRVTPFAV 352

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +EPV + G+ +TNATLHN D IK            + + +GD V+V++AG+VIP+VV  +
Sbjct: 353 MEPVRVAGSTVTNATLHNADEIKR-----------KGVLIGDTVVVRKAGDVIPEVVGPV 401

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           V  R    + F FPS CP C + +VR+            RC    +C AQ  ERL H  S
Sbjct: 402 VALRDGSEREFVFPSHCPACGTPLVRENG------GVDIRCPNARSCPAQLRERLFHIAS 455

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A +IE LG +  +   +S+     +    D+F L   +  +        G    +   
Sbjct: 456 RGALDIESLGYEAANALLESK----LLADEGDLFLLTPEKLRTVPFFTKKDGELSANAVK 511

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L +++   +   L R + +L IRHVG   AR+LA+ + S         + +A        
Sbjct: 512 LLENLESAKTRPLWRVLVALSIRHVGPTAARALAREFGSIDAIRNASVDELAA------- 564

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
              V  VG +IA++I +++    +   V A        +   +++ +  +    +V TGT
Sbjct: 565 ---VEGVGRVIAESIRDWFAVDWHQEIV-AKWSAAGVRMAEEQRSAAKPLAGITVVVTGT 620

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L +  R  A E +   G   +  +S+KTD ++VG+NPGSK +KA+QLG+ I++EE F  L
Sbjct: 621 LSRWSRDSAIEAIQDAGGRAAGSVSKKTDFVVVGENPGSKYDKARQLGIPILDEEGFATL 680

Query: 718 LQQYNTTLR 726
           L +     R
Sbjct: 681 LTKGPDAAR 689


>gi|311694426|gb|ADP97299.1| NAD-dependent DNA ligase [marine bacterium HP15]
          Length = 678

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/707 (34%), Positives = 385/707 (54%), Gaps = 45/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L   I  H+  YY    P + D+EYD L R    +   +P+LA       P  ++
Sbjct: 10  QRVEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELA---SDTSPTRRV 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G     S  +V H +P LSL+  ++ ++LR F  R+       +D  + +  EPK+DG  
Sbjct: 67  GSAAETSFEEVVHRLPMLSLDNAFSEDELRDFDRRVKDRLGITED--VEYVCEPKLDGLA 124

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           +++ YE G    AA RGDG+SGED++A IR IP++P  L   ++P+++EVRGEVY+ K+ 
Sbjct: 125 VSLHYENGALTTAATRGDGYSGEDITANIRTIPSVPLKLRGDDVPDLVEVRGEVYMPKDG 184

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSE-IFAKGQY 255
           F  LN  +   G K + NPRNAA+G LR+   T   R  L    + +  T E +    Q+
Sbjct: 185 FEQLNRRLAERGEKTFVNPRNAAAGSLRQKKSTVTARRPLEMCAYSVAVTDESLLPDTQW 244

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L++++  GF +N  +R+A      +  Y+E+   R  LPY+IDG+V+KV+    QK L
Sbjct: 245 EGLKRVQSWGFRINPEMRKARGAEECLEAYSELMDKRDGLPYEIDGIVFKVNRLDQQKAL 304

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NATLHN
Sbjct: 305 GFVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNATLHN 364

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           D+ +GD V ++RAG+VIP+VV ++  +R   A+    P  CP
Sbjct: 365 MDEIRRL-----------DVHIGDTVFIRRAGDVIPQVVKVVAEKRPSGAREVELPRQCP 413

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S V++          A  RC+GGL C AQ+ E ++H+ SR A +IEGLG + +D   
Sbjct: 414 VCDSDVIQIEGE------AVARCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDIMV 467

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   +   AD++ L         ++      G+ S  NL  +I++ RN  L RF++
Sbjct: 468 DQGM----VETVADLYRLTTDDLVKLERM------GEKSAANLVAAIDRARNPVLWRFLY 517

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A++LA ++ + +  A            D  SL  VP VG I+A  I  F
Sbjct: 518 ALGIREVGEATAKALAGHFGTLEAIAAA----------DEESLQTVPDVGPIVAGHIRSF 567

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++   N   ++AL +          +     ++ +  V TGTL  + R +A+E +  LGA
Sbjct: 568 FEQTHNRETLDALREAGVRWQEEEVREGEKPLKGQTWVLTGTLSGMTRDEAKEKLESLGA 627

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            V+  +S+KT  ++ G+  GSKL KA+QL V +++E   + LL+++ 
Sbjct: 628 KVAGSVSKKTACVVAGEAAGSKLAKAEQLEVPVLDEAGLVALLEEHG 674


>gi|226310273|ref|YP_002770167.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
 gi|254781268|sp|C0Z4D6|DNLJ_BREBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226093221|dbj|BAH41663.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
          Length = 671

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/707 (34%), Positives = 381/707 (53%), Gaps = 48/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A  ++  L + I  H+  Y++  +P I D EYD L R    +  +FPDL   + P+ P  
Sbjct: 6   AETKIKELAKRIERHNRLYHEEDRPEISDQEYDQLMRELRELETSFPDL---QSPDSPSL 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE      KV H  P LSL   +N ED+R F  R+    Q     ++ +  E KIDG
Sbjct: 63  RVGGEPLPFFEKVVHKTPMLSLGNAFNEEDIRDFDRRVR---QAVGSQAVRYVAELKIDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++ YE G FV  A RGDG +GED++  ++ I +IP  L+   P  +EVRGE Y+SK 
Sbjct: 120 LAVSLHYENGLFVRGATRGDGTTGEDITQNLKTIRSIPLRLTK--PLTLEVRGEAYMSKG 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E    G   +ANPRN+A+G LR+L+P     R L+ F++G+G       +   
Sbjct: 178 AFEKLNKEREERGEALFANPRNSAAGSLRQLDPKIAASRQLDTFIYGIGDLQGETVESHS 237

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L  +  LGF VN   R  +    ++++       R  LPY+IDG+V KVD ++ Q++L
Sbjct: 238 EGLDLLETLGFMVNQERRVFDDVDELLAFIAGWTEKRPHLPYEIDGMVIKVDSYAQQEEL 297

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A T L  I++ +GRTG +TP A L+PV++ G  +  A+LHN
Sbjct: 298 GFTAKSPRWAIAYKFPAEEAVTILEGIEVSVGRTGNVTPTALLKPVSLAGTTVKRASLHN 357

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED I+            + + +GD V+VK+AG++IP+++ ++   R  +  PF+ P+ CP
Sbjct: 358 EDIIR-----------EKGLLIGDHVVVKKAGDIIPEIIAVLPERRTGNEVPFAMPTHCP 406

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S +VR           A RC   + C A   E + HFVSR A NI+GLG++ +   +
Sbjct: 407 ECGSELVRLEEE------VALRCINPM-CPALIREGMIHFVSRTAMNIDGLGEKVVAQLY 459

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++ L +++         +   G+ SV NL  +I   +  SLER +F
Sbjct: 460 RD----GIIHSVADLYYLHQQRDALL----GLERMGEKSVDNLLAAIEASKENSLERVLF 511

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR VGA+ AR LA+++ +     Q     I           ++  +G  +A ++V +
Sbjct: 512 GLGIRLVGAKAARVLAEHFGNIDTIMQASEEEI----------TQIDEIGPKMAASLVNY 561

Query: 616 YQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  P+    +E L            R E         K +V TGTL ++ R +A+E + +
Sbjct: 562 FAQPQAQAVIERLRAAGVNMEYKGIRIESGADLPFSGKTIVLTGTLTQMSRQEAEEAIAR 621

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LG  V+  +S+KTD++I G+  GSKLEKA++LGV +M+E  FL +L+
Sbjct: 622 LGGKVTGSVSKKTDLVIAGEKAGSKLEKAEKLGVAVMDEAGFLQVLE 668


>gi|33602779|ref|NP_890339.1| DNA ligase [Bordetella bronchiseptica RB50]
 gi|81429836|sp|Q7WCJ7|DNLJ_BORBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33577221|emb|CAE35778.1| DNA ligase [Bordetella bronchiseptica RB50]
          Length = 696

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/733 (35%), Positives = 392/733 (53%), Gaps = 72/733 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + +QA   ++ L  EI  H+  YY +  P + D+EYDAL R   A+    P+L     P+
Sbjct: 7   TPQQA---IARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPD 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFF 128
            P  ++G         V H++P LSL   ++ ED+R F  R+    +       D  + +
Sbjct: 61  SPTQRVGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEY 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E K+DG  I++RYE+G+   AA RGDG +GEDV+A IR I  +P  L    P ++EVR
Sbjct: 121 FCELKLDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLH-GAPRVLEVR 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEV +++ +F  LN    A G K + NPRNAA+G LR+L+P     R L FF +  G+  
Sbjct: 180 GEVLMNRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVH 239

Query: 248 EIFA---------------------KGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYY 285
            +                            ML  +  LG PVN     +     G++++Y
Sbjct: 240 GLPEGMPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFY 299

Query: 286 NEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345
             +  +R+ LPYDIDG+VYKVD    Q+ LG  AR+PR+ ++HKF  ++A T+LL I++Q
Sbjct: 300 ERIGKLRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQ 359

Query: 346 IGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405
           +GRTG +TPVARL PV +GG  +TNATLHNED I+            +D+R+GD V+V+R
Sbjct: 360 VGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDTVIVRR 408

Query: 406 AGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACS 465
           AG+VIP+VV  ++ +R  DA+ F   + CPIC S + R          A  RCTGGL C+
Sbjct: 409 AGDVIPEVVGPVLEKRPADAREFVMLTACPICGSAIERPEGE------AIARCTGGLFCA 462

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525
           AQ+ + L H   R A +IEGLG++ +D    ++     ++  ADI++L   +  +  ++ 
Sbjct: 463 AQRKQTLLHAAGRKALDIEGLGEKLIDQLVDADR----VKSLADIYSLTAFELAALERM- 517

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                G  S  NL  +I++ R  +L R +F+LGIRHVG   AR +A+++ S +       
Sbjct: 518 -----GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASE 572

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
             +          + VP VG ++A +I  F+  P N   VE L ++        E   +S
Sbjct: 573 EAL----------LAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS 622

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K  V TGT+    R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LG
Sbjct: 623 -LAGKTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELG 681

Query: 706 VKIMNEEQFLFLL 718
           V +++E+    LL
Sbjct: 682 VPVLDEDGLKALL 694


>gi|33594429|ref|NP_882073.1| DNA ligase [Bordetella pertussis Tohama I]
 gi|81424006|sp|Q7VRX7|DNLJ_BORPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33564504|emb|CAE43819.1| DNA ligase [Bordetella pertussis Tohama I]
 gi|332383840|gb|AEE68687.1| DNA ligase [Bordetella pertussis CS]
          Length = 696

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/733 (35%), Positives = 393/733 (53%), Gaps = 72/733 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + +QA   ++ L  EI  H+  YY +  P + D+EYDAL R   A+    P+L     P+
Sbjct: 7   TPQQA---IARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPD 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFF 128
            P  ++G         V H++P LSL   ++ ED+R F  R+    +       D  + +
Sbjct: 61  SPTQRVGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEY 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E K+DG  I++RYE+G+   AA RGDG +GEDV+A IR I  +P  L    P ++EVR
Sbjct: 121 FCELKLDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLH-GAPRVLEVR 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEV +++ +F  LN    A G K + NPRNAA+G LR+L+P     R L FF +  G+  
Sbjct: 180 GEVLMNRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVH 239

Query: 248 EIFA---------------------KGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYY 285
            +                            ML  +  LG PVN     +     G++++Y
Sbjct: 240 GLPEGMPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFY 299

Query: 286 NEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345
             +  +R+ LPYDIDG+VYKVD    Q+ LG  AR+PR+ ++HKF  ++A T+LL I++Q
Sbjct: 300 ERIGKLRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQ 359

Query: 346 IGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405
           +GRTG +TPVARL PV +GG  +TNATLHNED I+            +D+R+GD V+V+R
Sbjct: 360 VGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDTVIVRR 408

Query: 406 AGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACS 465
           AG+VIP+VV  ++ +R  DA+ F   + CPIC S + R  +       A  RCTGGL C+
Sbjct: 409 AGDVIPEVVGPVLEKRPADAREFVMLTACPICGSAIERPESE------AIARCTGGLFCA 462

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525
           AQ+ + L H   R A +IEGLG++ +D    ++     ++  ADI++L   +  +  ++ 
Sbjct: 463 AQRKQTLLHAAGRKALDIEGLGEKLIDQLVDADR----VKSLADIYSLTAFELAALERM- 517

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                G  S  NL  +I++ R  +L R +F+LGIRHVG   AR +A+++ S +       
Sbjct: 518 -----GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASE 572

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
             +          + VP VG ++A +I  F+  P N   VE L ++        E   +S
Sbjct: 573 EAL----------LAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS 622

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K  V TGT+    R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LG
Sbjct: 623 -LAGKTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELG 681

Query: 706 VKIMNEEQFLFLL 718
           V +++E+    LL
Sbjct: 682 VPVLDEDGLKALL 694


>gi|301052018|ref|YP_003790229.1| DNA ligase [Bacillus anthracis CI]
 gi|300374187|gb|ADK03091.1| DNA ligase [Bacillus cereus biovar anthracis str. CI]
          Length = 669

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPVCESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|258514074|ref|YP_003190296.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771]
 gi|257777779|gb|ACV61673.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771]
          Length = 677

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/708 (35%), Positives = 396/708 (55%), Gaps = 47/708 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +++A K +  L +EI  H+  YY    P+I D+EYD L     A+   FPDL      
Sbjct: 1   MELKEAGKRVLELRREIEEHNYNYYVMDNPVIGDAEYDRLMLELTALEQQFPDLL---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+       VTH +P LSL   ++ ++L+ F  R+           + + +E
Sbjct: 58  HSPTQRVGGKPKEGFTTVTHRVPMLSLANSFSEQELKDFDRRVRGAL---AGEEVNYVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE G F   A RGDG +GED++  ++ I ++   L   +P ++EVRGEV
Sbjct: 115 LKIDGLAVSLFYENGLFQRGATRGDGETGEDITENLKTIRSLSLQLKEAVP-VLEVRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+S   F  LN    A  +  +ANPRNAA+G LR+L+P   + R L+ F++ +G    + 
Sbjct: 174 YMSGEAFRRLNKSREAEDQPLFANPRNAAAGSLRQLDPRITSSRQLSAFIYAVGYYEGVS 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             G  E L+ ++ LGFPV+   R+      +++Y  + ++ R  LP+ IDGLV KVD   
Sbjct: 234 LSGHEEALRYLQDLGFPVSRYYRKFADIEEVLAYCRDWEARRFELPFAIDGLVIKVDSLE 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I++KF  +QA T++ DI I +GRTG+LTP A L+PV + G+ ++ 
Sbjct: 294 QQLKLGATAKSPRWSIAYKFPPEQAVTKVKDIIINVGRTGVLTPTALLDPVRLAGSTVSR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED IK            +D+++GD V+V++AGE+IP+VV ++  +R     PF  
Sbjct: 354 ATLHNEDIIK-----------EKDVQIGDTVVVQKAGEIIPEVVRVLSEKRSGGEIPFKM 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P +CP C ++VVR          AA RCTG +AC +Q  E L HFVSR A +I GLG   
Sbjct: 403 PQYCPDCGAKVVRLEGE------AASRCTG-MACPSQLREGLIHFVSRGAMDIAGLGPAV 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     +      I   AD++ L+     +  +      FG  SV NL  ++ + +  SL
Sbjct: 456 ITQLLDT----GLIHDAADLYNLRYEDLVNLER------FGQKSVQNLLQALEQSKKASL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R IF+LGIRHVG   A++LA+++ S QN                  L+ +P +G  IA 
Sbjct: 506 GRLIFALGIRHVGERAAKTLARHFGSLQNLMAA----------GLEELVGIPEIGTKIAG 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I+ F++  +N+  V+ L++     + +  E + +  +E K  V TGTL+   R  A+++
Sbjct: 556 SIITFFEQEQNLSVVDKLVRAGVNIVEKDTEASTAGSLEGKTFVLTGTLRSFTRETAKQF 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  LG  V+A +S+ TD ++ G+NPGSK +KA +LG+K+++E  F  L
Sbjct: 616 IEGLGGKVTASVSKSTDYVLAGENPGSKYDKAVKLGIKVIDEAYFKEL 663


>gi|229101110|ref|ZP_04231876.1| DNA ligase [Bacillus cereus Rock3-28]
 gi|228682238|gb|EEL36349.1| DNA ligase [Bacillus cereus Rock3-28]
          Length = 669

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +EVRGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+      R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDTKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELK----------SINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|332982281|ref|YP_004463722.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON]
 gi|332699959|gb|AEE96900.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON]
          Length = 665

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/708 (34%), Positives = 376/708 (53%), Gaps = 48/708 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + ++ L Q I +H+  YY    P I D+EYDAL R  + +   +P++     P+ P
Sbjct: 5   EDVIQRVNELRQIIEHHNYMYYVLDSPEISDAEYDALMRELEQLESKYPEII---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+++     V HS+P LSL  +++  ++R F  R+           + + LE KI
Sbjct: 62  TQRVGGQVSGQFQPVVHSVPLLSLNDVFSESEIRDFDRRVRAALN----EDVQYVLEVKI 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + + Y+ G F+  A RGDG  GEDV+A +R I +IP  L L +P  +EVRGEV++ 
Sbjct: 118 DGLSVALTYQDGLFIRGATRGDGFVGEDVTANLRTIRSIP--LRLKMPINVEVRGEVFMP 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           K  F  LN++    G   +ANPRNAA+G +R+L+P     R+L+ FV  L +      + 
Sbjct: 176 KKYFYKLNEQREKDGLPLFANPRNAAAGSVRQLDPAITAQRHLDIFVFNLQRIEGYAFET 235

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  ++  GF +   +   +T    +      +  R  LPY+IDGLV KV+    ++
Sbjct: 236 HVESLMFLKEQGFKIMPYLIPCDTIDEAIEQCRLWEGKRYELPYEIDGLVIKVNSLRQRE 295

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +++PRW +++KF  ++  + +  I +Q+GRTG+LTP A LEPV + G  ++ ATL
Sbjct: 296 ILGNTSKTPRWAVAYKFPAERKESIIKHIVVQVGRTGVLTPTAVLEPVRLAGTTVSRATL 355

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNEDYIK            +DIR+GD VLV++AG++IP+VV +I  +R  D + F  P  
Sbjct: 356 HNEDYIK-----------EKDIRIGDHVLVQKAGDIIPEVVSVIKEKRTGDERIFEMPDK 404

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C +  VR          AA RCTG ++C AQ    L HF SRDA +IEGLG   +  
Sbjct: 405 CPVCGADAVRIDGE------AARRCTG-VSCPAQVERGLIHFASRDAMDIEGLGPAVVRQ 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               +     IR  ADI+ L+        ++      G  S  NL ++I   ++  L R 
Sbjct: 458 LLNKK----LIRDEADIYYLKYEDLVKLERM------GPKSAQNLINAIQASKDRGLARL 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGI  VG   A  LA+ +       +           D   L  +P +G  IA+++V
Sbjct: 508 LYALGIPLVGTRAASILAERFGDIYELMKA----------DQAQLTAIPEIGPKIAESVV 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F++  +    ++ L           ++  ++ +     V TGTL K  R +A E +  L
Sbjct: 558 TFFKQEQTKDLIKRLETAGVRLTADKKQKGNAPLAGLTFVLTGTLSKYTREQATEIIEGL 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G  V+  +S+KTD +I GD PGSKL+KA QLGVK+++E +F +L+ Q 
Sbjct: 618 GGKVTGSVSKKTDYVIAGDGPGSKLDKALQLGVKVIDENEFEWLIGQE 665


>gi|134094553|ref|YP_001099628.1| DNA ligase [Herminiimonas arsenicoxydans]
 gi|166215813|sp|A4G4R4|DNLJ_HERAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|133738456|emb|CAL61501.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Herminiimonas
           arsenicoxydans]
          Length = 696

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/716 (35%), Positives = 372/716 (51%), Gaps = 46/716 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P E           + L  E++ H+  YY    PI+ D+EYD L R   A+  + P+L  
Sbjct: 18  PKEIPDASDPSARAAWLRSELNRHNYAYYVLDNPIVPDAEYDQLFRELQALEASHPELLV 77

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               + P  ++G     +   VTHS+P LSL   +  ED+  F  R+      ++   + 
Sbjct: 78  F---DSPTQRVGALALTAFPPVTHSVPMLSLGNGFEDEDVLAFDKRVSEGLNSRE--EVE 132

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           +  E K DG  I +RYE G  V AA RGDG +GE+V+A IR +  IP  L  N  P++++
Sbjct: 133 YATELKFDGLAINLRYEDGVLVQAATRGDGATGENVTANIRTVRAIPLRLHTNNPPKVLD 192

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K D   LN      G K +ANPRNAA+G LR+L+      R L FF +G+G 
Sbjct: 193 VRGEVMMYKADLAKLNARQRDAGAKEFANPRNAAAGSLRQLDSRITAQRSLRFFSYGIGL 252

Query: 246 TSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                       +L     LG PV +         G++ +Y      R  LPY+IDG+VY
Sbjct: 253 LEGADMPASHSALLDWYAELGIPVCSERAVVRGVQGLLEFYKATSEKRPQLPYEIDGVVY 312

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+    Q QLG  +R+PR+ I+HKF  ++A T + DI++Q+GRTG +TPVARL PV +G
Sbjct: 313 KVNRVDQQLQLGFVSRAPRFAIAHKFPAEEALTTVQDIEVQVGRTGAITPVARLAPVLVG 372

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHNED ++            +DI++GD V+V+RAG+VIP+VV  +   R   
Sbjct: 373 GVTVTNATLHNEDEVRR-----------KDIQIGDTVIVRRAGDVIPEVVAFVPERRPAS 421

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNI 483
           A+PF  PS CP+C S +VR  +       A  RC+GG + C+AQ+   L HFVSR A ++
Sbjct: 422 ARPFIMPSSCPVCGSPIVRLEDE------AIARCSGGWVKCAAQRKGGLLHFVSRRAMDV 475

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG Q ++           I   AD++ L  R      ++       D S  N+ D++ 
Sbjct: 476 EGLGDQLVEQLVDKHI----ITTAADLYKLGFRALAELDRMA------DKSAQNVLDALE 525

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +  +L RFI++LGIRHVG   A+ LA+++ +     Q               L+ V  
Sbjct: 526 KSKRTTLARFIYALGIRHVGEATAKELARHFGNLDALLQASPE----------QLLEVAD 575

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G ++A +I  F+ +  NI  +E L            +N    +  K  V TGTL  + R
Sbjct: 576 IGPVVAASITAFFTDAMNIELIEQLRAAGVTWPEHVVENRPRPLAGKTFVLTGTLPTLSR 635

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             A E +   G  V+  +S+KT  ++ G   GSKL KA++LGV I++E   L LL 
Sbjct: 636 DAAAEKIEAAGGKVAGSVSKKTSYVVAGAEAGSKLAKAEELGVTILDETGLLQLLD 691


>gi|288554984|ref|YP_003426919.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4]
 gi|288546144|gb|ADC50027.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4]
          Length = 668

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/714 (35%), Positives = 387/714 (54%), Gaps = 54/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  ++A K + +L +++  +   YY   +P++ D+EYD L +   A+    P+L      
Sbjct: 1   MDRQEAEKRVQTLREKLEEYGYHYYVLDQPLVTDAEYDQLMQELIALEGEHPELV---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      KV H IP LSL   +N +DLR F  R+         +++ ++ E
Sbjct: 58  DSPSVRVGGEPLPFFEKVEHQIPMLSLGNAFNDQDLRDFDRRVRERVG----DNVTYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GKFV  A RGDG  GED++  ++ IP IP  L L     +EVRGE 
Sbjct: 114 LKIDGLAVSLTYENGKFVRGATRGDGTIGEDITNNLKTIPAIP--LKLKQEASLEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+     G + +ANPRNAA+G LR+L+P     R L+ F++ +G      
Sbjct: 172 YMPKKSFEALNEAKSEAGEEKFANPRNAAAGSLRQLDPKIAAKRNLSIFIYAIGNAEGQD 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E L  ++ LGF VNN  +   T   ++ Y NE    R+ LPY+IDG+V KVD   
Sbjct: 232 LASHHEGLAYLKELGFKVNNESKHCATIEEVIEYTNEWLDKRADLPYEIDGIVIKVDSIE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            QK+LG  A+SPRW  + KF  ++  T L DI++ +GRTG++TP A L+PV + G  +  
Sbjct: 292 QQKELGFTAKSPRWATAFKFPAEEVVTVLRDIELSVGRTGVVTPTAILDPVVVAGTTVKR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +D+++GD V+VK+AG++IP+VV+++ + R    + FS 
Sbjct: 352 ASLHNEDLIR-----------EKDVKLGDTVIVKKAGDIIPEVVNVLTDRRDGRERDFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR A NI+GLG++ 
Sbjct: 401 PTHCPECESELVRLEGE------VALRCINP-ECPAQIREGLIHFVSRQAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     I   AD++ L R +     ++      G+ SV NL  +I   +  SL
Sbjct: 454 IAQLFEHK----LIHTVADLYQLDRSELLKLERM------GEKSVDNLMKAIEASKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIR VG++ A++LA  + S            A    D  +L+ V  +G+ +A 
Sbjct: 504 EKLLFGLGIRFVGSKAAKTLAMEFESID----------AIIEADEAALVAVNEIGEKMAA 553

Query: 611 AIVEFYQNPRNICAVEALLKEV------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +IV F++       ++ L           P      +   S   NK +V TG L ++ R 
Sbjct: 554 SIVRFFETDEVKELIKRLQSYGVNTTYKGPKPVNGTEAAESPFANKTVVLTGKLYEMTRD 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+E +  LG  V+  +S+KTDI+I G++ GSK +KA++LG++I +E   L  L
Sbjct: 614 EAKEKIETLGGKVTGSVSKKTDIVIAGEDAGSKKKKAEELGIEIWDEAALLKEL 667


>gi|196040110|ref|ZP_03107412.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99]
 gi|196028965|gb|EDX67570.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99]
          Length = 669

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R    + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|160899029|ref|YP_001564611.1| NAD-dependent DNA ligase [Delftia acidovorans SPH-1]
 gi|254781308|sp|A9BZW4|DNLJ_DELAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160364613|gb|ABX36226.1| DNA ligase, NAD-dependent [Delftia acidovorans SPH-1]
          Length = 703

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/727 (35%), Positives = 384/727 (52%), Gaps = 52/727 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    + ++   ++ +L  +++     YY    P + D EYD + ++  A+  A+P+L  
Sbjct: 16  PESGAAPDKVLAKVQALRAQLNQWAHEYYVLDTPTVPDGEYDRVFQQLQALEGAYPELV- 74

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-N 124
              P+ P  ++ G +   L  V H++P LS+    + E      F  RI +  +  +   
Sbjct: 75  --TPDSPTQRVIGAVLDGLMPVRHAVPMLSIRTETDNEATGAEAFDARIRKELELAEGAP 132

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IP 182
            + +  EPK DG  + +RYE G+ V A  RGDG  GEDV+  IR I  IP  L     +P
Sbjct: 133 PVEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRKIPLSLPEGKGVP 192

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
            ++EVRGEVY+ + DF+ LN+   A G K +ANPRNAA+G +R+L+      R L+FF +
Sbjct: 193 PVVEVRGEVYMGRADFVKLNERQQAAGGKSFANPRNAAAGSVRQLDSGIAAQRPLSFFAY 252

Query: 242 GLGKT-----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           GLG+              Y MLQ +R  GFPV   V  A     +V+++  M + R+TLP
Sbjct: 253 GLGEITPAAQGGPDFVTHYAMLQTLRDWGFPVAPQVCIAKGAAELVAFHQRMGAERATLP 312

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           Y+IDG+VYKV+  + Q+QLG  +R PRW ++HK+  ++  TR+  IDIQ+GRTG LTPVA
Sbjct: 313 YEIDGVVYKVNSLAQQRQLGFVSREPRWAVAHKYPAEEMPTRMEGIDIQVGRTGKLTPVA 372

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           RL PV +GG ++TNATLHN   I+            + +R GD V+V+RAG+VIP+VV  
Sbjct: 373 RLAPVAVGGVIVTNATLHNLFEIRK-----------KRVRTGDTVVVRRAGDVIPEVVGR 421

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +  +R      F  P+ CPIC S V R          A HRCTGGL C AQ+ E + HF 
Sbjct: 422 VPGDRPAYVPNFRMPAACPICGSAVARPKGE------ANHRCTGGLFCPAQRKEAILHFA 475

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           +R A +IEGLG + +D           +R   D++ L      S  ++       + S  
Sbjct: 476 ARRAMDIEGLGDKLVDQLVD----GHVVRTLPDLYRLGLVALASLDRMA------EKSAQ 525

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           N+ D++ K +  +L RF+F LGIR VG   A+ LA+++                      
Sbjct: 526 NVLDALEKSKKTTLSRFLFGLGIRQVGESTAKDLARHFGQLDAIMDA----------SVE 575

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFT 655
            L++V  VG I+A++I  F+  P N   VE L    V    G   +  +  +    +V T
Sbjct: 576 QLLQVRDVGPIVAESIHTFFAQPHNREVVEQLRACGVHWEEGAAREQTAQPLAGMTVVLT 635

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R +A+E +   GA VS  +S+KT  ++ G   GSKL KA++LGV +++E   L
Sbjct: 636 GTLPTLGRDQAKEMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVTVLDEAGML 695

Query: 716 FLLQQYN 722
            LL   +
Sbjct: 696 ALLAGGD 702


>gi|294497111|ref|YP_003560811.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551]
 gi|294347048|gb|ADE67377.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551]
          Length = 668

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/715 (33%), Positives = 390/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+  +  L   ++ +   YY   +P + D+EYD L      I  +FP+L  +   
Sbjct: 1   MEFETAKSRVQELRDLLNQYGYEYYVLDQPSVPDAEYDKLMNELIEIEESFPELKTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG++  +  KV H    LSL   +N EDLR F  R+ +       +   +  E
Sbjct: 58  DSPTQRIGGQVLDAFEKVQHQTSMLSLGNAFNEEDLRDFDRRVRQAVG----DEFSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G  V  A RGDG +GE+++  ++ I +IP  L +  P  +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYLVLGATRGDGTTGENITENLKTIRSIP--LRIKEPLSMEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ +  F ALN+  +     P+ANPRNAA+G LR+L+P     R L+ FV+ +  T E+ 
Sbjct: 172 FMPRKSFEALNEAKMERDEVPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYAMTDTGELE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   +   T   +++Y    ++ R  L YDIDG+V KVD F 
Sbjct: 232 IDSHSESLNLLDELGFKTNRERQTCETIDDVIAYIESWQTQRPELSYDIDGIVVKVDSFD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I++KF  ++  T+L++I++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQAELGTTAKSPRWAIAYKFPAEEVVTKLVNIELTVGRTGVITPTAILEPVQVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I  +R  + Q F+ 
Sbjct: 352 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIEEKRTGEEQEFTM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC    +C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECESELVRLEGE------VALRCINP-SCPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     I+  ADI+TL ++Q     ++      G+ S  NL  +I   +  SL
Sbjct: 454 ISQLFREQ----LIKDVADIYTLTKQQLIELERM------GEKSADNLIAAIGASKKNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A++LA+++ +     +            +  L+ +  +G  +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKTLAQHFETIDKLTKAT----------YDELVAINEIGAKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIENKKLVFTGTLQKIQRHK 665
           AIV ++        +  L +       +       +NV S    K +V TG L+++ R++
Sbjct: 554 AIVAYFTQEEVQELIHELKEYGVNLTYKGPKLVSVENVDSVFAGKTVVLTGKLEQLSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  V+  +S+KTD+++ G+  GSKL KA +L +++ +E + L  L +
Sbjct: 614 AKAQIEALGGKVTGSVSKKTDLVVAGEEAGSKLTKANELEIEVWDEARLLTELNK 668


>gi|125973550|ref|YP_001037460.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405]
 gi|256003369|ref|ZP_05428360.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360]
 gi|281417755|ref|ZP_06248775.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20]
 gi|166215580|sp|A3DE88|DNLJ_CLOTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|125713775|gb|ABN52267.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405]
 gi|255992659|gb|EEU02750.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360]
 gi|281409157|gb|EFB39415.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20]
 gi|316940208|gb|ADU74242.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 1313]
          Length = 663

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/706 (33%), Positives = 389/706 (55%), Gaps = 46/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              K +  L + ++YH   YY    P I D EYD L R  + +    PDL     P+ P 
Sbjct: 2   DIEKRILELREILNYHSHKYYVEDAPEISDFEYDELYRELEKLEQERPDLI---TPDSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            +IGG+      KV H++   SL  +++ E+L  F  R+         + + + +E KID
Sbjct: 59  QRIGGKPLEGFKKVVHAVQMQSLSDVFSREELLAFDRRVREAVG----DDVEYVVEKKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YE G F   A RGDG  GEDV+  ++ I TIP  L  ++P ++EVRGEV+ISK
Sbjct: 115 GLSVSLVYENGVFTRGATRGDGLVGEDVTQNLKTIRTIPLRLKRDLP-LLEVRGEVFISK 173

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF+ +N+E  A G++ +ANPRNAA+G LR+L+P   + R L+ FV  + +      K  
Sbjct: 174 KDFIKINEEQEAAGQQLFANPRNAAAGSLRQLDPKVTSQRKLDIFVFNIQRIEGQSFKTH 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ ++ LGF  + G +     + +    N +   R  + ++IDG V KV+    ++ 
Sbjct: 234 SETLEFLKELGFKTSPGYKVCKDINAVWEEINRIGEERGEIDFEIDGAVVKVNSLEQREI 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++PRW +++K+  +   T +  I + +GRTG+LTP+A  +PV + G+ ++ ATLH
Sbjct: 294 LGSTIKAPRWAVAYKYPAEVKETVVKKITVNVGRTGVLTPIAIFDPVRLAGSTVSRATLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N DYIK            +DIR+GD V +++AG++IP+VVD++  +R  +   F+ P  C
Sbjct: 354 NMDYIK-----------EKDIRIGDTVRIRKAGDIIPEVVDVVFEKRSGNEAEFNMPEQC 402

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C + VVR+         AA+RCTG + CSAQ   ++ HF SRDA NIEGLG   ++  
Sbjct: 403 PVCGADVVREEGE------AAYRCTG-IECSAQLYRKIVHFASRDAMNIEGLGPAIIEVL 455

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       I+  AD++ L + ++T    + NI   G  SV NL  SI K +  +++R I
Sbjct: 456 LEK----GLIKEIADLYYLHKEKET----LVNIERMGKKSVENLLASIEKSKQNNIDRLI 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F  GIRH+G   A+ L++ + S            A  N     ++ +P  G+ +A+++ +
Sbjct: 508 FGFGIRHIGLRAAQLLSENFESLD----------ALMNASAEDIMAIPEFGEKMAKSVEQ 557

Query: 615 FYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F++  +N   VE L      ++    +K   +  E K  V TGTL    R +A+E +   
Sbjct: 558 FFRQKQNRDTVEKLKAAGVNTVSFGKKKIKDNRFEGKTFVLTGTLPSFTRKEAEEIIKSF 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   S  +S+KTD ++ G++ GSKL+KA++LG++I++E++F  +++
Sbjct: 618 GGKTSGSVSKKTDYVLAGEDAGSKLQKAKELGIEIIDEDKFRKMIE 663


>gi|33597876|ref|NP_885519.1| DNA ligase [Bordetella parapertussis 12822]
 gi|81425567|sp|Q7W0T4|DNLJ_BORPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33574305|emb|CAE38638.1| DNA ligase [Bordetella parapertussis]
          Length = 696

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/733 (35%), Positives = 391/733 (53%), Gaps = 72/733 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + +QA   ++ L  EI  H+  YY +  P + D+EYDAL R   A+    P+L     P+
Sbjct: 7   TPQQA---IARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPD 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFF 128
            P  ++G         V H++P LSL   ++ ED+R F  R+    +       D  + +
Sbjct: 61  SPTQRVGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEY 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E K+DG  I++ YE+G+   AA RGDG +GEDV+A IR I  +P  L    P ++EVR
Sbjct: 121 FCELKLDGLAISLCYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLH-GAPRVLEVR 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEV +++ +F  LN    A G K + NPRNAA+G LR+L+P     R L FF +  G+  
Sbjct: 180 GEVLMNRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVH 239

Query: 248 EIFA---------------------KGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYY 285
            +                            ML  +  LG PVN     +     G++++Y
Sbjct: 240 GLPEGMPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFY 299

Query: 286 NEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345
             +  +R+ LPYDIDG+VYKVD    Q+ LG  AR+PR+ ++HKF  ++A T+LL I++Q
Sbjct: 300 ERIGKLRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQ 359

Query: 346 IGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405
           +GRTG +TPVARL PV +GG  +TNATLHNED I+            +D+R+GD V+V+R
Sbjct: 360 VGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDTVIVRR 408

Query: 406 AGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACS 465
           AG+VIP+VV  ++ +R  DA+ F   + CPIC S + R          A  RCTGGL C+
Sbjct: 409 AGDVIPEVVGPVLEKRPADAREFVMLTACPICGSAIERPEGE------AIARCTGGLFCA 462

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525
           AQ+ + L H   R A +IEGLG++ +D    ++     ++  ADI++L   +  +  ++ 
Sbjct: 463 AQRKQTLLHAAGRKALDIEGLGEKLIDQLVDADR----VKSLADIYSLTAFELAALERM- 517

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                G  S  NL  +I++ R  +L R +F+LGIRHVG   AR +A+++ S +       
Sbjct: 518 -----GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASE 572

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
             +          + VP VG ++A +I  F+  P N   VE L ++        E   +S
Sbjct: 573 EAL----------LAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS 622

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K  V TGT+    R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LG
Sbjct: 623 -LAGKTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELG 681

Query: 706 VKIMNEEQFLFLL 718
           V +++E+    LL
Sbjct: 682 VPVLDEDGLKALL 694


>gi|229028145|ref|ZP_04184287.1| DNA ligase [Bacillus cereus AH1271]
 gi|228733163|gb|EEL84003.1| DNA ligase [Bacillus cereus AH1271]
          Length = 669

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|326317205|ref|YP_004234877.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374041|gb|ADX46310.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 732

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/756 (34%), Positives = 386/756 (51%), Gaps = 89/756 (11%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             E+  + +++L  ++      YY    P + D+EYD + +   A+  A P+L     P+
Sbjct: 15  DPEELGRRVAALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQALEAAHPELV---TPD 71

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK--FITRIYRFWQKKDDN-SIFFT 129
            P  ++ G +   L  V H++P LS+    + E      F  R+ R  +   D   + + 
Sbjct: 72  SPTQRVIGAVMEGLTPVRHTVPMLSIRTETDTEASGAETFDARVRRELKLAPDASPVEYV 131

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEII 185
            EPK DG  +++RYE G+ V AA RGDG  GEDV+  IR I  IP  L       +P ++
Sbjct: 132 AEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLPTGGDKGVPPVL 191

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEVY+ + DF  LN+     G K + NPRNAA+G +R+L+      R L+FF +GLG
Sbjct: 192 EVRGEVYMRRADFDRLNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLG 251

Query: 245 KT-----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
                          ++MLQ+++  GFPV   VR A     +V+++ E+   R  LPYDI
Sbjct: 252 DITPAAEGGPDFATHFDMLQQLKAWGFPVAAQVRTALGAAELVAFHREVGESRDQLPYDI 311

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV+  +LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+GRTG LTPVARL 
Sbjct: 312 DGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLA 371

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHN   I+            + +RVGD+V+V+RAG+VIP+VV  +  
Sbjct: 372 PVFVGGVTVTNATLHNLFEIRK-----------KGVRVGDQVIVRRAGDVIPEVVGTVPA 420

Query: 420 E-----------------------------------RHPDAQPFSFPSFCPICQSRVVRD 444
                                               R P    F  P  CPIC S VVR+
Sbjct: 421 ALLPVAGALQGSDALVDAASGADGTAPGADAARAAPRSPYVPNFRMPRQCPICGSAVVRE 480

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                    A HRCTGGL C AQ+ E L HF  R A +IEGLG++ +D   + +     I
Sbjct: 481 KGE------ANHRCTGGLFCPAQRKEALLHFAQRRAMDIEGLGEKLVDQLVEGQ----VI 530

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           R   D++ L        T + ++    + S  N+  ++ K ++ +L RF+F LGIRHVG 
Sbjct: 531 RTLPDLYRL------GLTALSSLDRMAEKSAQNVLAALEKSKHTTLPRFLFGLGIRHVGE 584

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A+ LA+++              A        L+ V  VG I+A+AI  F+  P N   
Sbjct: 585 ATAKDLARHFGGLD----------AIIGASVEQLLEVNDVGPIVAEAIHTFFAQPHNREV 634

Query: 625 VEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           VE      V+   G   +  +  +  K  V TGTL  + R  A+E +   GA V+  +S+
Sbjct: 635 VEQLRACGVTWKEGPPAERATLPLAGKTFVLTGTLPTLSREDAKERLEAAGAKVAGSVSK 694

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KT  ++ G+  GSKL KAQ+LGV +++E   L LLQ
Sbjct: 695 KTHYVVAGEEAGSKLTKAQELGVPVLDEAGMLALLQ 730


>gi|229089420|ref|ZP_04220691.1| DNA ligase [Bacillus cereus Rock3-42]
 gi|228693897|gb|EEL47589.1| DNA ligase [Bacillus cereus Rock3-42]
          Length = 669

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|49479078|ref|YP_034626.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476055|ref|YP_893206.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis str. Al
           Hakam]
 gi|225862344|ref|YP_002747722.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB102]
 gi|229182688|ref|ZP_04309929.1| DNA ligase [Bacillus cereus BGSC 6E1]
 gi|81397398|sp|Q6HP94|DNLJ_BACHK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215395|sp|A0R906|DNLJ_BACAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781551|sp|C1EV74|DNLJ_BACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49330634|gb|AAT61280.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|118415280|gb|ABK83699.1| NAD-dependent DNA ligase [Bacillus thuringiensis str. Al Hakam]
 gi|225789655|gb|ACO29872.1| DNA ligase (NAD(+)) [Bacillus cereus 03BB102]
 gi|228600773|gb|EEK58352.1| DNA ligase [Bacillus cereus BGSC 6E1]
          Length = 669

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|228995667|ref|ZP_04155330.1| DNA ligase [Bacillus mycoides Rock3-17]
 gi|228764044|gb|EEM12928.1| DNA ligase [Bacillus mycoides Rock3-17]
          Length = 669

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 391/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E+A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD+++ +  E
Sbjct: 58  DSPTVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+FV  A RGDG +GED++  ++ I  IP  L   +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIPLRLKEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LNDE    G   +ANPRNAA+G LR+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNDEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC    AC AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACDSELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD++ L + Q     +      FG+ S + L  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYPLTQEQLLQLER------FGEKSASKLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+LA+++ +  +  +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATEEELK----------EINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++ N   +  ++   +       +       +N++S    K +V TG L+ + R +
Sbjct: 555 SIVTYFDNEDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ + +LG  V+  +S+ TD+++ G+  GSKL +A++  +++ NEE+FL  L +
Sbjct: 615 AKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFLQELNK 669


>gi|30260478|ref|NP_842855.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Ames]
 gi|49183320|ref|YP_026572.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Sterne]
 gi|50196911|ref|YP_052606.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65317730|ref|ZP_00390689.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Bacillus anthracis str. A2012]
 gi|165871348|ref|ZP_02215996.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488]
 gi|167634237|ref|ZP_02392559.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442]
 gi|167640082|ref|ZP_02398349.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193]
 gi|170688355|ref|ZP_02879564.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465]
 gi|170708762|ref|ZP_02899199.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389]
 gi|177653653|ref|ZP_02935792.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174]
 gi|190567340|ref|ZP_03020254.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|190567489|ref|ZP_03020402.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|196034623|ref|ZP_03102031.1| DNA ligase, NAD-dependent [Bacillus cereus W]
 gi|227812970|ref|YP_002812979.1| DNA ligase, NAD-dependent [Bacillus anthracis str. CDC 684]
 gi|228913034|ref|ZP_04076673.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228925550|ref|ZP_04088639.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228944102|ref|ZP_04106481.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229119952|ref|ZP_04249207.1| DNA ligase [Bacillus cereus 95/8201]
 gi|229604913|ref|YP_002864923.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248]
 gi|254686689|ref|ZP_05150547.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. CNEVA-9066]
 gi|254739086|ref|ZP_05196788.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742292|ref|ZP_05199978.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Kruger B]
 gi|254756068|ref|ZP_05208097.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Vollum]
 gi|254761885|ref|ZP_05213734.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Australia
           94]
 gi|81584374|sp|Q81ZG1|DNLJ_BACAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781547|sp|C3PBP1|DNLJ_BACAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781548|sp|C3L543|DNLJ_BACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|30253846|gb|AAP24341.1| DNA ligase (NAD(+)) [Bacillus anthracis str. Ames]
 gi|49177247|gb|AAT52623.1| DNA ligase, NAD-dependent [Bacillus anthracis str. Sterne]
 gi|50082973|gb|AAT70114.1| DNA ligase, NAD-dependent [Bacillus anthracis str. 'Ames Ancestor']
 gi|164712832|gb|EDR18361.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488]
 gi|167511893|gb|EDR87272.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193]
 gi|167530551|gb|EDR93266.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442]
 gi|170126341|gb|EDS95231.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389]
 gi|170667687|gb|EDT18441.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465]
 gi|172081233|gb|EDT66308.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174]
 gi|190561276|gb|EDV15248.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|190561467|gb|EDV15438.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|195992666|gb|EDX56626.1| DNA ligase, NAD-dependent [Bacillus cereus W]
 gi|227002604|gb|ACP12347.1| DNA ligase (NAD(+)) [Bacillus anthracis str. CDC 684]
 gi|228663418|gb|EEL19003.1| DNA ligase [Bacillus cereus 95/8201]
 gi|228815491|gb|EEM61733.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228834028|gb|EEM79576.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228846439|gb|EEM91452.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229269321|gb|ACQ50958.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248]
          Length = 669

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R    + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|114768813|ref|ZP_01446439.1| DNA ligase [alpha proteobacterium HTCC2255]
 gi|114549730|gb|EAU52611.1| DNA ligase [alpha proteobacterium HTCC2255]
          Length = 711

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/718 (39%), Positives = 436/718 (60%), Gaps = 16/718 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E L   QA KEL  L + +   +  YY    PI+ D+EYD LK+R   I   FP+L  
Sbjct: 6   PVEKLDKMQAEKELIRLNEILDRANSDYYSNDAPILSDAEYDTLKKRNLDIESRFPNLKL 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               N   +KIG + + +  K+ H++  LSL   ++ +D+  F  R+ +     +D  I 
Sbjct: 66  K---NSVSDKIGSKPSSTFKKIKHTVKMLSLANGFDEQDIIDFDQRVKKILG-FEDRVIS 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  EPKIDG  ++++Y  GK   A  RGDG  GE+V+     I  IP+ +  N P I+E+
Sbjct: 122 YVAEPKIDGLSLSLKYIDGKLFQATTRGDGEVGENVTENAITIQNIPKYIH-NAPSILEI 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S NDF  LN +   +  K ++NPRNAA+G LR+L+     +R L F+ +  G+ 
Sbjct: 181 RGEVYMSLNDFNELNIKQKNIDAKIFSNPRNAAAGSLRQLDSKVTASRPLKFYAYAWGEV 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S   +  QY  + ++R  GF  N+  ++      ++S+Y+ + + R+ L YDIDG+VYKV
Sbjct: 241 STPISDTQYNAIDRLRKFGFSTNDLTKKCYGPKELISHYDNISNKRADLGYDIDGVVYKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D  S Q +LG R+ +PRW I+HKF  + A T L  I+IQ+GRTG L+PVARL+PVN+GG 
Sbjct: 301 DNLSYQDRLGFRSTTPRWAIAHKFPAEIAQTWLESIEIQVGRTGALSPVARLKPVNVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNEDYIKG D+ G ++RGG DIR GD V V RAG+VIPK+ D+ V++R   ++
Sbjct: 361 IVSNATLHNEDYIKGKDSKGNIIRGGNDIREGDWVYVYRAGDVIPKISDVDVSKRISTSK 420

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P++FPSFCP C S   R      G  VA  RC GG+ C AQ ++ L HFVSR AF+I+GL
Sbjct: 421 PYTFPSFCPECSSPSER----IEGDSVA--RCIGGITCPAQAVQGLAHFVSRGAFDIDGL 474

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++ F++       ++ PADIF L+ R +    ++EN  G+G  S  NL+++I  +R
Sbjct: 475 GNKQIEQFYQ----LGWVKEPADIFKLKLRYENGIKRLENRDGWGQKSANNLFNAIESKR 530

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I L + +++LGIRHVG   A  L+K+Y S+ N  + +N   +     W  L+ +  VG+
Sbjct: 531 TIPLNKMLYALGIRHVGETSATLLSKHYKSFDNLKKSMNEAKSLEGSSWSDLMSIDGVGE 590

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+A+A+V+ + NP     ++ L++E+            S +E   +VFTG+L+ + R +A
Sbjct: 591 ILAKAVVQIFNNPAQRQIIDNLVEELVIENEIENIVSGSPLEGMVVVFTGSLELMTRSEA 650

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +    + GA VS  +S+KTD+++ G   GSK +KA +LGVK+++E ++L L+   N +
Sbjct: 651 KISAEKFGAKVSGSVSKKTDLVVSGPGAGSKEKKAIELGVKVLSESEWLKLINLNNLS 708


>gi|228989472|ref|ZP_04149457.1| DNA ligase [Bacillus pseudomycoides DSM 12442]
 gi|228770197|gb|EEM18776.1| DNA ligase [Bacillus pseudomycoides DSM 12442]
          Length = 669

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 391/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E+A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD+++ +  E
Sbjct: 58  DSPTVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+FV  A RGDG +GED++  ++ I  IP  L   +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIPLRLKEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G LR+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC    AC AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACDSELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD++ L + Q     +      FG+ S + L  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYPLTQEQLLQLER------FGEKSASKLVQAIETSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+LA+++ +  +  +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATEEELK----------EINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++ N   +  ++   +       +       +N++S    K +V TG L+ + R +
Sbjct: 555 SIVTYFDNEDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ + +LG  V+  +S+ TD+++ G+  GSKL +A++  +++ NEE+FL  L +
Sbjct: 615 AKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFLQELNK 669


>gi|332284990|ref|YP_004416901.1| DNA ligase [Pusillimonas sp. T7-7]
 gi|330428943|gb|AEC20277.1| DNA ligase [Pusillimonas sp. T7-7]
          Length = 698

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/725 (35%), Positives = 395/725 (54%), Gaps = 63/725 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A +   +L  EI+ H+  YY    P++ D+ YD L      +    P+L     P  P  
Sbjct: 11  AAQRAETLRAEINEHNHRYYVQDAPVVSDAAYDKLMTELIELEQTHPELI---TPESPTQ 67

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEP 132
           ++G E   S   V H++P  SL   ++ ED+  F  R++           +  + +  E 
Sbjct: 68  RVGAEPLPSFDSVRHAVPMRSLGNAFDAEDIHAFSKRVFDTLHGAGMAGAEEKVQYVAEL 127

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K DG  +++RYE+G+ V AA RGDG +GED+++ IR + ++P  L  + P+++EVRGEV 
Sbjct: 128 KFDGLAVSLRYEEGRLVRAATRGDGQTGEDITSNIRTLRSVPLKLKGDYPQVLEVRGEVL 187

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK------ 245
           +++ DF  LN    A G K + NPRNAA+G LR+L+P     R L F+ +G G+      
Sbjct: 188 MNRQDFEKLNQAQQARGEKVFVNPRNAAAGSLRQLDPRITAKRPLRFYAYGWGEIRIVHD 247

Query: 246 -----------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
                      ++E+  K   +ML  ++ LG PVN+  +      G++ +Y  + S R+ 
Sbjct: 248 GQTELFRQESGSAEMPRKTHAQMLDWLQALGLPVNDSRKLVCGAQGLLDFYEHIGSTRTA 307

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LP+DIDG+VYKVD    Q+ LG  AR+PR+ I+HKF  ++ +TRLL I++Q+GRTG +TP
Sbjct: 308 LPFDIDGVVYKVDSLEAQEVLGYVARAPRFAIAHKFPAQEETTRLLSIEVQVGRTGAITP 367

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARLEPV +GG  +TNATLHNED I+            +D+RVGD V+V+RAG+VIP+V+
Sbjct: 368 VARLEPVFVGGVTVTNATLHNEDEIRR-----------KDVRVGDTVVVRRAGDVIPEVL 416

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +++ R PD   F  P  CP+C S + R  +       A  RCTGGL C+AQ+ + L H
Sbjct: 417 APVLDLRPPDTSLFVMPRQCPVCGSAIERPEDE------AVSRCTGGLFCAAQRKQSLSH 470

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
              R A +IEGLG++ +D    S      ++  AD+FTL   +  +  ++      G  S
Sbjct: 471 AAGRKALDIEGLGEKLVDQLVDSGR----VKSLADLFTLTSDELAAYERM------GRKS 520

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL  ++ K R  SLER +++LGIRHVG   AR LA+++ S            A    D
Sbjct: 521 ADNLVAALEKARTPSLERLLYALGIRHVGEATARDLARHFGSVD----------AVMAAD 570

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLV 653
             +L++V  VG ++A +I+ F+  P N   +  L      +    + + S   +  K LV
Sbjct: 571 ETALLQVHDVGQVVAASILNFFAEPHNRDVIAQLAAAGVHASAPEQASGSDLRLAGKTLV 630

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGT+    R +A   +   G  VS  +S+KT  ++ G+  GSKL KA +LGV +++E+ 
Sbjct: 631 LTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYVVAGEEAGSKLTKAAELGVPVLDEDG 690

Query: 714 FLFLL 718
              LL
Sbjct: 691 LKALL 695


>gi|75759916|ref|ZP_00739987.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228899023|ref|ZP_04063296.1| DNA ligase [Bacillus thuringiensis IBL 4222]
 gi|74492583|gb|EAO55728.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228860598|gb|EEN04985.1| DNA ligase [Bacillus thuringiensis IBL 4222]
          Length = 669

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIELEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G++ GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGESAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|251788438|ref|YP_003003159.1| NAD-dependent DNA ligase LigA [Dickeya zeae Ech1591]
 gi|247537059|gb|ACT05680.1| DNA ligase, NAD-dependent [Dickeya zeae Ech1591]
          Length = 682

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/714 (35%), Positives = 403/714 (56%), Gaps = 50/714 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +++ AR+ +  L   I +HD  Y+    P ILDSEYD LKR    +    P L  S   +
Sbjct: 10  NVDTARRRIKELRILIRHHDIKYHSEDDPEILDSEYDLLKRELSELEIQHPFLVTS---D 66

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G E  ++   + H +P LSL+ ++N +  + F  R+    +  +D  + F  E 
Sbjct: 67  SPTQRVGAEPLVAFGTIKHEVPMLSLDNVFNEDGFKAFSKRVSERLK--NDKELIFCCEL 124

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           K+DG  +++ YE G    A+ RGDG +GE++++ +R I  IP  L   NIP+ +EVRGEV
Sbjct: 125 KLDGLAVSLLYENGILERASTRGDGTTGENITSNVRTIRAIPLRLEGDNIPQRLEVRGEV 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-I 249
           ++    F ALN+E    G K +ANPRNAA+G LR+L+P    TR L F  +G+G      
Sbjct: 185 FMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRVTATRPLTFLCYGVGLVEGGA 244

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                ++ L + R  G PV++ +R       ++ +Y +++  R  L +DIDG+V KV+E 
Sbjct: 245 LPDTHWQRLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERGALGFDIDGVVIKVNEL 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  AR+PRW ++ KF  ++  T L D++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 305 TLQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVVVS 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            +++GDRV V+RAG+VIP++V ++++ER  DA+P  
Sbjct: 365 NATLHNADEIERL-----------GVQIGDRVAVRRAGDVIPQIVSVVLSERPADARPVV 413

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R          A  RCTGGL C+AQ+ E LKHFVSR A ++EG+G +
Sbjct: 414 FPTHCPVCGSDVERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVEGMGDK 467

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     E     ++ PAD+  L     T   ++      G  S  NL +++NK ++ +
Sbjct: 468 IIDQLVDKE----YVKTPADLLRLDIGILTRLDRM------GPKSAQNLVNALNKAKSTT 517

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA ++ + +          A    D  +L +V  VG ++A
Sbjct: 518 FARFLYALGIRDVGEATAANLAAHFGTLE----------ALQAADLDALQQVQDVGIVVA 567

Query: 610 QAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
             +  F     N   ++ L+           +    +  +S    K +V TG+L  + R 
Sbjct: 568 THVRNFLDEAHNQQVIQELIGDDVGLHWPDPVVVDVEASTSPFAGKTVVLTGSLSLLSRD 627

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 628 EAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLTKAQELGIDVIDEAEMMRLL 681


>gi|300118925|ref|ZP_07056636.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1]
 gi|298723541|gb|EFI64272.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1]
          Length = 669

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|171463268|ref|YP_001797381.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|254781389|sp|B1XTU0|DNLJ_POLNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171192806|gb|ACB43767.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 671

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/711 (38%), Positives = 399/711 (56%), Gaps = 48/711 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S     +  + L+ E++  +  YY    P++ D EYD L R    I    P+   SE   
Sbjct: 5   SPTNLAERYAFLQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAVHPEWVTSE--- 61

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GG        VTH++P LSL   +   +L  F  R            + +  E 
Sbjct: 62  SLSQRVGGAALKEFDSVTHAVPMLSLNNAFEDAELIAFDRRCREVLHA---EHMAYAGEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           K DG  I++RYE G  V AA RGDG SGEDV+A I+ I  IP  L   NIP+++EVRGEV
Sbjct: 119 KFDGLAISLRYENGLLVTAATRGDGASGEDVTANIKTIRAIPLKLTRKNIPQVLEVRGEV 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTSE 248
           ++   DF  +N +   +G K +ANPRNAA+G LR+L+      R L+FF +GLG  +   
Sbjct: 179 FMYLKDFEKMNRQAAELGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPQS 238

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   E+L     LG PV +  +  ++   I+++Y+E+   R +LPYDIDG+VYKV+ 
Sbjct: 239 WLPKTHEELLNAYIELGLPVCSERKVLHSVQEILAFYSEIDDKRDSLPYDIDGVVYKVNS 298

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+ Q +LG  +R+PR+ ++HK+  ++A T +L ID+Q+GRTG +TPVARL PV +GG  +
Sbjct: 299 FAEQAKLGFASRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTV 358

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHNED IK            +D+R+GD V V+RAG+VIP+VV +I + R  DA+ F
Sbjct: 359 TNATLHNEDEIKR-----------KDVRIGDTVSVRRAGDVIPEVVSVIKDRRPADAKEF 407

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             PS CP+C S + R  +       A  RC+GGL C AQ+ + L HF  R A +IEGLG+
Sbjct: 408 QMPSRCPVCDSHIERLADE------AVARCSGGLFCGAQRKQALIHFAHRRAMDIEGLGE 461

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D           +R PAD++ L        T + N+   G+ S  NL  +IN+ RN 
Sbjct: 462 KIVDQLVDQN----LVRTPADLYRL------GFTALANLERMGEKSADNLIKAINQSRNT 511

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFIF+LGIRHVG   A+ LA +Y       Q ++ ++    +D L+   V  VG ++
Sbjct: 512 TLARFIFALGIRHVGETTAKDLANHY-------QSMHALMDAGVEDLLT---VKDVGPVV 561

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A +I  F Q   N   +E LL      +   EK +S+ +  K  V TGT   + R +A++
Sbjct: 562 ADSITSFMQEAHNREVIEQLLAS-GMRLAVEEKVISAAVAGKTFVLTGTFPTMTRDEAKD 620

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + GA V+  +S+KTD ++ G + GSKL KA++LGV +++E   L LL+
Sbjct: 621 LLEKAGAKVAGSVSKKTDYVVAGTDAGSKLTKAEELGVPVIDEAAMLDLLK 671


>gi|289577826|ref|YP_003476453.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9]
 gi|289527539|gb|ADD01891.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9]
          Length = 662

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/707 (33%), Positives = 389/707 (55%), Gaps = 49/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L ++I+YH+  YY   +P I D EYD L R    +   +P+L   + P+ P  +
Sbjct: 4   KERINELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEL---KTPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +L+ F  R+           + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHIVPMLSLANAFSEGELKDFDRRVRE-----AVGDVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G F   + RGDG  GE+V+  ++ I +IP  L  N+   + VRGEV++ +  
Sbjct: 116 SVELIYENGIFTVGSTRGDGIIGENVTPNLKTIKSIPLRLKDNV--SLVVRGEVFMPRAS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L +      K   E
Sbjct: 174 FERLNTEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQRVEGRKFKTHVE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ ++  GF V    ++ +    ++    E+++++  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLQFLKEQGFKVIPIHKKCSNIDEVIREIEEIRNLKDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKEPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V++++AGE+IP+VV+++  ER    + F  P+ CP+
Sbjct: 354 DYIK-----------EKDIRIGDTVIIQKAGEIIPEVVEVVKEERTGHEREFIMPNKCPV 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR          A  RCT  + C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVRLPGE------AVRRCT-SVNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      I   AD++ L+        ++      GD SV NL ++I + +   L+R +F 
Sbjct: 456 N----GLIHNIADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++ +  +  +            +    ++P VG  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHFKTMDDIMKA----------KFEDFTKLPDVGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +N+  +E L K         ++ VSS  E K  V TG L+   R +A   + + G  
Sbjct: 556 AEKQNVETIEKLKKAGVNMKKLSKEKVSSIFEGKTFVLTGALENYTREEATRIIEERGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KTD ++VG +PGSKL+KAQ+LG++I++E+QF  +L+  N 
Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIEIIDEKQFEEMLKGENI 662


>gi|254724765|ref|ZP_05186548.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. A1055]
          Length = 669

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q+ DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QEIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R    + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|197117724|ref|YP_002138151.1| NAD-dependent DNA ligase [Geobacter bemidjiensis Bem]
 gi|254781337|sp|B5EIJ0|DNLJ_GEOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197087084|gb|ACH38355.1| DNA ligase, NAD-dependent [Geobacter bemidjiensis Bem]
          Length = 668

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/710 (36%), Positives = 375/710 (52%), Gaps = 44/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A + +  L  EI  H+  YY+   P I D+EYDAL R    +  ++PDLA    P
Sbjct: 1   MDKTAAAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASYPDLAL---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +V H+ P LSLE  +  +D+  F  R+ RF        I +  E
Sbjct: 58  DSPTGRVGGRPVAKFTQVRHTTPMLSLENAFTEKDIVDFDDRMKRFLGLSGAEEIGYVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  + + Y  G     + RGDG  GE+V+  ++ I  IP  L +   P ++ VRGE
Sbjct: 118 PKMDGVAVELVYRDGLLAIGSTRGDGLVGEEVTQNLKTIKDIPLRLQTEEPPGLLTVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    F   N E    G  P+ANPRNAA+G LR+L+      R L+ F +  G+   +
Sbjct: 178 VYLPLEPFRKFNQEREEAGEPPFANPRNAAAGSLRQLDSKITAKRPLSIFCYAPGEVDGV 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q + L  +     PVN   R      G++ YYNEM   R  LPY+IDG+V KVD F
Sbjct: 238 AFQSQSDFLSTIPTWRIPVNPLTRLVPGVQGVLDYYNEMMEKRDDLPYEIDGVVVKVDRF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ+ LGE++RSPRW I+ KF  +QA+T + DI  Q+GRTG++TPVA LEPVN+ G +++
Sbjct: 298 SLQRDLGEKSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPVAHLEPVNVSGVMVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR GD V+V+RAG+VIP VV ++V +R        
Sbjct: 358 RATLHNWEEMER-----------KDIRRGDTVVVERAGDVIPAVVQVLVEKRQGSETLLP 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C   VVR           A RC G L C AQ LER+KHF +R A +I+GLG++
Sbjct: 407 VPQACPVCGGEVVRIPGE------VAVRCVG-LNCPAQALERVKHFAARRAMDIDGLGEK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     +     IR  ADI+ L                 G     NL +SI   +   
Sbjct: 460 FIEQLLNLK----LIRNVADIYRLTE------EDFMQFERMGKKLAENLLNSIAASKERE 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R IF+LGIRHVG   A+ LA  + S +N A      +            +  VG  +A
Sbjct: 510 LSRLIFALGIRHVGEHTAKLLASAFGSMENLAAASEEEL----------TSIREVGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +I +F+++  N+  +  L +    +    EK V      K  VFTG L+K  R +A++ 
Sbjct: 560 ASIADFFKSEENLEVLRELKEH-GVNPRVEEKRVGGRFTGKTFVFTGALEKFTRDEAKKM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   G   +  +S+KTD ++ G + GSKL+KAQQLGV++++E+ FL L+Q
Sbjct: 619 VELEGGHAAGSVSKKTDYVVAGADAGSKLDKAQQLGVRVLSEDDFLELMQ 668


>gi|295702476|ref|YP_003595551.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319]
 gi|294800135|gb|ADF37201.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319]
          Length = 668

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/715 (33%), Positives = 391/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+  +  L   ++ +   YY   +P + D+EYD L      I  +FP+L  +   
Sbjct: 1   MEFETAKSRVQELRDLLNQYGYEYYVLDQPSVPDAEYDKLMNELIEIEDSFPELKTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG++  +  KV H    LSL   +N EDLR F  R+ +  +    +   +  E
Sbjct: 58  DSPTQRIGGQVLDAFEKVQHQTSMLSLGNAFNEEDLRDFDRRVRQAVE----DEFSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G  V  A RGDG +GE+++  ++ I +IP  L +  P  +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYLVLGATRGDGTTGENITENLKTIRSIP--LRIKEPLSMEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ +  F ALN+  +     P+ANPRNAA+G LR+L+P     R L+ FV+ +  T E+ 
Sbjct: 172 FMPRKSFKALNEAKMERDEVPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYAMTDTGELE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   +   T   +++Y    ++ R  L YDIDG+V KVD F 
Sbjct: 232 IDSHSESLNLLDELGFKTNKERQTCETIDDVIAYIESWQTQRPELSYDIDGIVVKVDSFD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I++KF  ++  T+L++I++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQAELGTTAKSPRWAIAYKFPAEEVVTKLVNIELTVGRTGVITPTAILEPVQVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I  +R  + Q F+ 
Sbjct: 352 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIEEKRTGEEQEFTM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC    +C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECESELVRLEEE------VALRCINP-SCPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     I+  ADI+TL ++Q     ++      G+ S  NL  +I   +  SL
Sbjct: 454 ISQLFREQ----LIKDVADIYTLTKQQLIELERM------GEKSADNLIAAIEASKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A++LA+++ +     +            +  L+ +  +G  +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKTLAQHFETIDKLTKAT----------YDELVAINEIGAKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIENKKLVFTGTLQKIQRHK 665
           AIV ++        +  L +       +       +NV S    K +V TG L+++ R++
Sbjct: 554 AIVAYFTQEEVQELIHELKEYGVNLTYKGPKLVSVENVDSVFAGKTVVLTGKLEQLSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  V+  +S+KTD+++ G+  GSKL KA +L +++ +E + L  L +
Sbjct: 614 AKAQIEALGGKVTGSVSKKTDLVVAGEEAGSKLTKANELEIEVWDEARLLTELNK 668


>gi|289208742|ref|YP_003460808.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
 gi|288944373|gb|ADC72072.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
          Length = 697

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/721 (35%), Positives = 383/721 (53%), Gaps = 57/721 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  + +  L ++I +H+  YY    P + D+E+DAL R  + +    PDL     P+ P 
Sbjct: 17  EVGERIEQLRRQIEHHNYRYYVLDDPEVSDAEFDALMRELEQLEADHPDLV---TPDSPT 73

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFT 129
            ++GG        V H +P LSL   +  +++R F  R+     K+  +       + + 
Sbjct: 74  QRVGGAPAAGFDTVRHRLPMLSLANGFESDEIRDFDRRVRERLAKQTGDPARAEQAVAYM 133

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEII 185
            EPK+DG  I++ YE G+ V AA RGDG +GEDV+  +R +  IP  L      + P ++
Sbjct: 134 AEPKLDGLAISLIYENGRLVQAATRGDGETGEDVTGNVRTVRPIPLHLGDRYTDDAPGVL 193

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLG 244
           EVRGEV++ ++DF  LN  + A G++ + NPRNAA+G LR+L+P    R  L+FF + +G
Sbjct: 194 EVRGEVFMRRSDFERLNQGLEADGQRGFMNPRNAAAGSLRQLDPKVTARRPLSFFAYSVG 253

Query: 245 KTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     Q   L  +  LGFPV       +   G ++YY  +   R  L Y+IDG+V
Sbjct: 254 HVEGGTLPDTQSGTLDWLHRLGFPVCPERAVLDGVEGCLAYYERLAERRRELDYEIDGIV 313

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD  + Q+QLG  +R+PRW I+HKF  ++ +T L  +D ++GRTG LTPVARLEPV +
Sbjct: 314 YKVDSLADQQQLGFVSRAPRWAIAHKFPAEEQTTTLRAVDFRVGRTGALTPVARLEPVLV 373

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN D I             +DIR+GDRV+V+RAG+VIP+VV     ER  
Sbjct: 374 GGVTVSNATLHNMDEIAR-----------KDIRIGDRVIVRRAGDVIPEVVGRAGGERPA 422

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D +    P+ CP C S + R          A  RCTGGL C AQ+ E LKHFVSR A +I
Sbjct: 423 DTRAIEMPTRCPECDSHIERPEGE------AVARCTGGLVCPAQRREALKHFVSRRAMDI 476

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EG G++ ++           ++ PAD+F L       T ++E +   G     NL +++ 
Sbjct: 477 EGFGEKLIEQL----ADGGIVQSPADLFAL------DTERLEALERVGPKLAENLVNALE 526

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + R  +L RFIF+LGIR VG   AR+LA YY       Q           D  +L  VP 
Sbjct: 527 QARETTLARFIFALGIREVGEVTARNLATYYGDLDTLMQA----------DAEALQEVPD 576

Query: 604 VGDIIAQAIVEFYQNPRNICAVEA-----LLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           VG I+A+ I  F+  P N+  + A     +     P+    EK  ++ +     V TG+ 
Sbjct: 577 VGPIVAEHIANFFAEPHNLEVIRALREAGVHWPDPPARPAAEKGETAPLAGNTYVLTGSF 636

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A+  +   GA V+  +S+KT  +I G +PGSK+ KA+ L + I+  +    LL
Sbjct: 637 DTMTREEAKAALEARGAKVTGSVSKKTTAVIAGTDPGSKVTKAESLDIPILGPDDLAQLL 696

Query: 719 Q 719
            
Sbjct: 697 A 697


>gi|189425977|ref|YP_001953154.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ]
 gi|254781338|sp|B3E8F8|DNLJ_GEOLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189422236|gb|ACD96634.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ]
          Length = 683

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/711 (36%), Positives = 387/711 (54%), Gaps = 44/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            + A+   + L + + +H+ CYY+   P I D+EYDAL R    I  A PDL     P+ 
Sbjct: 13  PDTAQLRAAELRRLLEHHNRCYYELDSPEISDAEYDALFRELQVIEAARPDLL---TPDS 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+      +V H +P LSLE     +++R F  RI       D  ++ +  EPK
Sbjct: 70  PTLRVGGKPLARFSQVRHRMPMLSLENAMQEDEIRGFEQRIRSLLALPDTVALQYQCEPK 129

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  + + Y+ G  V A+ RGDG  GE+V+A IR +  +P  L   N+P ++EVRGEVY
Sbjct: 130 MDGLAVELVYQDGLLVQASTRGDGEVGEEVTANIRTVRNVPLRLTGDNLPALLEVRGEVY 189

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFA 251
           +    F  LN +    G  P+ANPRNAA+G +R+L+P  + R  L    +G+G   E  A
Sbjct: 190 LPLAAFQQLNQQREEAGEPPFANPRNAAAGSIRQLDPAVVARRPLAMVCYGVG-VMETEA 248

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q E++ ++   G PV++  RQ +   G ++ + +++  R +L Y+IDG+V KVD+  L
Sbjct: 249 RTQTELMSQLAAWGLPVSDQARQVSGIEGAIACFQDLQERRDSLLYEIDGMVIKVDDLRL 308

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LGE++RSPRW I+ KF  +QA+TR+ +I + +GRTG++TPVA LEPV + G  ++ A
Sbjct: 309 QQELGEKSRSPRWAIACKFPPRQATTRINEIILSVGRTGVITPVASLEPVELSGVTVSRA 368

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+            +DIRVGDRV+V+RAG+VIP VV +++++R    Q    P
Sbjct: 369 TLHNWDEIRR-----------KDIRVGDRVIVERAGDVIPAVVKVLLDKRSGTEQELPEP 417

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C SR  R+          A RC GGLAC  Q  E + HF SRDA +I+GLG + +
Sbjct: 418 ETCPVCGSRAAREAGE------VAVRCQGGLACPPQLAESIIHFASRDAMDIDGLGSKYI 471

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           ++  AD++ L R               GD    NL  +I   +   L 
Sbjct: 472 EQLIS----LGLVKDIADLYRLTR------DDFMQFERMGDKLAENLLAAIASSKQQELS 521

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIRHVG   AR+LA+ + S  N                  L  +  VG  +A +
Sbjct: 522 RFIFALGIRHVGERTARTLAERFGSIDNLQTAT----------LEELTSIRDVGPAVAIS 571

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           I  F+  P N   ++ L K    +    EK V   +     VFTGTL  + R +A++ V 
Sbjct: 572 IRSFFDAPANQTVLQRL-KAAGVAPTVEEKRVGGRLAGLTFVFTGTLATLGRDEAKKLVE 630

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             G  V+  +S+KTD ++ G   GSKLEKA+ LG+ +++E+ F  LL    
Sbjct: 631 AEGGNVTGSVSKKTDYVVAGSEAGSKLEKARNLGITVLSEDAFSKLLATGG 681


>gi|228931797|ref|ZP_04094693.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228827777|gb|EEM73515.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 669

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|304411949|ref|ZP_07393560.1| DNA ligase, NAD-dependent [Shewanella baltica OS183]
 gi|307303283|ref|ZP_07583038.1| DNA ligase, NAD-dependent [Shewanella baltica BA175]
 gi|304349809|gb|EFM14216.1| DNA ligase, NAD-dependent [Shewanella baltica OS183]
 gi|306913643|gb|EFN44065.1| DNA ligase, NAD-dependent [Shewanella baltica BA175]
          Length = 685

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/710 (35%), Positives = 384/710 (54%), Gaps = 51/710 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  + 
Sbjct: 12  EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 71  --DSPTQRVGGLALAKFDQITHPKPMLSLDNAFDEADFSAFHKRVTDK-----VGEVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALND   A   K + NPRNAA+G LR+L+      R L F+ + LG   
Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVE 243

Query: 248 E---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  +E LQ+++  G PV++ ++       +  YY ++ + R  L ++IDG+V 
Sbjct: 244 PDSHPLAKTHFEQLQQLKSWGLPVSSEIKVCAELSQVYDYYKDILTRRGDLAFEIDGVVM 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++   Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 304 KVNDIDQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I  L            I+VGD V+++RAG+VIP++V I+   R   
Sbjct: 364 GVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPET 412

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A    FP  CP+C S V R      G++VA  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 413 ATDIVFPHNCPVCGSLVER----LEGEVVA--RCSGGLFCEAQRKEAIKHFASRKALDID 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIEA 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S            A        L  V  V
Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLD----------ALRVATVEQLTEVEDV 566

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G ++AQ +  F+  P N+  ++AL+   V           +  ++ +  V TGTL ++ R
Sbjct: 567 GTVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSAEAQPLKGQTWVLTGTLNQLNR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+M+E++
Sbjct: 627 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676


>gi|52144941|ref|YP_081888.1| NAD-dependent DNA ligase LigA [Bacillus cereus E33L]
 gi|81689708|sp|Q63GS3|DNLJ_BACCZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51978410|gb|AAU19960.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus cereus E33L]
          Length = 669

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELK----------TINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|228983547|ref|ZP_04143752.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228776143|gb|EEM24504.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 669

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELK----------EINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|218901495|ref|YP_002449329.1| DNA ligase, NAD-dependent [Bacillus cereus AH820]
 gi|254781549|sp|B7JM96|DNLJ_BACC0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218535434|gb|ACK87832.1| DNA ligase, NAD-dependent [Bacillus cereus AH820]
          Length = 669

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+V+++I ++R    + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVINVIFDKRTGGEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|218895413|ref|YP_002443824.1| DNA ligase, NAD-dependent [Bacillus cereus G9842]
 gi|228963387|ref|ZP_04124548.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|254781550|sp|B7IUW5|DNLJ_BACC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218545091|gb|ACK97485.1| DNA ligase, NAD-dependent [Bacillus cereus G9842]
 gi|228796281|gb|EEM43728.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 669

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G++ GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGESAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|16077730|ref|NP_388544.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221308499|ref|ZP_03590346.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221312822|ref|ZP_03594627.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221317746|ref|ZP_03599040.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221322025|ref|ZP_03603319.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|7673987|sp|O31498|DNLJ_BACSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2632976|emb|CAB12482.1| DNA ligase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 668

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/715 (34%), Positives = 407/715 (56%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++    L + I+ +   YY   +P + D+EYD L +   AI    PDL     P
Sbjct: 1   MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KVTH  P LSL   +N +DLR F  R+ +       + + + +E
Sbjct: 58  DSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQSVG----DDVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  L +N    IEVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIP--LKMNRELSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+E I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 YMPKRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   ++  +   +++  +E+++ R+ LPY+IDG+V KVD   
Sbjct: 232 VETQSQGLDFLDELGFKTNQERKKCGSIEEVITLIDELQAKRADLPYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV+++V++R  + + FS 
Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVDQRTGEEKEFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L +       ++  +   G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFEEN----LVRNVADLYKLTK------ERVIQLERMGEKSTENLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  +     +          + V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEEL----------LAVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           A++ ++     +  +  L +    ++ +  K V +E        K +V TG L+++ R++
Sbjct: 554 AVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+ TD++I G+  GSKL KAQ+L +++ NEEQ +  L++
Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668


>gi|321314391|ref|YP_004206678.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5]
 gi|320020665|gb|ADV95651.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5]
          Length = 668

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/715 (34%), Positives = 406/715 (56%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++    L + I+ +   YY   +P + D+EYD L +   AI    PDL     P
Sbjct: 1   MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KVTH  P LSL   +N +DLR F  R+ +       + + + +E
Sbjct: 58  DSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQSVG----DDVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  L +N    IEVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIP--LKMNRELSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+E I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 YMPKRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   ++  +   +++  +E+++ R+ LPY+IDG+V KVD   
Sbjct: 232 VETQSQGLDFLDELGFKTNQERKKCGSIEEVITLIDELQAKRADLPYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV+++V +R  + + FS 
Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L +       ++  +   G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFEEN----LVRNVADLYKLTK------ERVIQLERMGEKSTENLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  +     +          + V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEEL----------LAVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           A++ ++     +  +  L +    ++ +  K V +E        K +V TG L+++ R++
Sbjct: 554 AVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+ TD++I G+  GSKL KAQ+L +++ NEEQ +  L++
Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668


>gi|310823543|ref|YP_003955901.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
 gi|309396615|gb|ADO74074.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 673

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/714 (35%), Positives = 404/714 (56%), Gaps = 52/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + ++ A      L +E+++H+  YY    P + D+EYD L R    +   FP LA    P
Sbjct: 1   MDLKTAETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPALA---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      KV H  P LSL  ++N E+  +F  RI +     D   + +  E
Sbjct: 58  DSPTQRVGGEAAEKFAKVVHRAPMLSLANVFNDEEFTEFDERIRKVVGPAD---VTYVCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEV 187
           PK+DG  IT+RYE G+F+  A RGDG +GEDV+  +R +  +P  L     + +P ++EV
Sbjct: 115 PKLDGLAITLRYENGRFLQGATRGDGTTGEDVTGNLRTVRPLPLELLPEAGMAVPPVLEV 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEV+I K DF  LN++    G   +ANPRNAA+G LR+L+P    +R L+  ++ +  T
Sbjct: 175 RGEVFIRKEDFKKLNEKREEEGEALFANPRNAAAGSLRQLDPKITASRPLSVSLYEIVPT 234

Query: 247 SEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             + A       L+ ++ LG PVN+   +A    G+ + Y      R  L +++DG+V K
Sbjct: 235 EGVPAFDTHTAKLEYLQKLGLPVNHH-ERAQGLEGVRAAYQAALKGRHALKFEVDGMVVK 293

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    +++LG+ ++SPRW +++KF  ++ STR+  I++Q+GRTG LTPVA L+PV +GG
Sbjct: 294 VDSEDQRRRLGQVSKSPRWAVAYKFPPEEESTRVEAIEVQVGRTGALTPVAHLKPVKVGG 353

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ ATLHNED ++            +D+R GD V V+RAG+VIP++V ++ N+R  D+
Sbjct: 354 VTVSRATLHNEDELRR-----------KDVRQGDTVFVRRAGDVIPEIVSVVPNQRPADS 402

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P+ FP  CP+C ++ V+D      +  A  RCTG  +C AQ +E+++HF SR A +I+G
Sbjct: 403 KPYEFPQHCPVCGAQAVKD------EEGAIIRCTGA-SCPAQLVEKVRHFASRPAMDIDG 455

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G +       S      ++  AD++ L R Q  S  ++      G+ S  NL  +I + 
Sbjct: 456 VGDKLAAQLVASGR----VKTFADLYALTREQLLSLERM------GEKSADNLLAAIERS 505

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +  RF+++LGIRHVG   A++LA+ +                   D  +L RV  VG
Sbjct: 506 KQTTQRRFLYALGIRHVGEATAKALAEAFP----------EAPLLYTADMEALTRVKDVG 555

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +AQ +  F+Q P+N  A++AL      +    + N       K +V TG +  + R +
Sbjct: 556 PTMAQVLHAFFQEPQNRAAIDAL-LAAGVTPAPPQVNTGGPFAGKTVVLTGGMTGMSRDQ 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E + + G  VS  +SRKTD ++ G++ GSKL+KAQ+LGV++++E+ FL LLQ
Sbjct: 615 AKEEIERRGGKVSGSVSRKTDFVVAGEDAGSKLKKAQELGVRVLDEQAFLKLLQ 668


>gi|229095009|ref|ZP_04226005.1| DNA ligase [Bacillus cereus Rock3-29]
 gi|229113962|ref|ZP_04243388.1| DNA ligase [Bacillus cereus Rock1-3]
 gi|228669421|gb|EEL24837.1| DNA ligase [Bacillus cereus Rock1-3]
 gi|228688339|gb|EEL42221.1| DNA ligase [Bacillus cereus Rock3-29]
          Length = 669

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+      R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDTKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELK----------SINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|315127017|ref|YP_004069020.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
 gi|315015531|gb|ADT68869.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
          Length = 673

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/708 (34%), Positives = 383/708 (54%), Gaps = 46/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++++ L   +  H+  YY    P I D+EYD L R    +    P+   +   + P  K+
Sbjct: 7   EQINHLRTTLEQHNYSYYVLDTPSIPDAEYDRLLRTLSELETQHPEFLTA---DSPTQKV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG       +V H +P LSL+  +  ++   F  RI       +   + F  EPK+DG  
Sbjct: 64  GGAALAKFEQVAHQVPMLSLDNAFGEDEFSGFNRRIKERLMSTE--ELTFCCEPKLDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           ++I Y  G  V AA RGDG +GE+++  ++ I  +P  L   + P  +EVRGEV++    
Sbjct: 122 VSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDDYPRELEVRGEVFMDSAG 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQY 255
           F  LN E    G K + NPRNAA+G LR+L+      R L F+ +  G        +  Y
Sbjct: 182 FEKLNAEAEKRGDKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGTLPEDHY 241

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L K+   G P+    +        ++YYN++ + RS L Y+IDG+V KV++ +LQ++L
Sbjct: 242 QQLAKLTDWGLPLCPETKLVEGPKAALAYYNDILTRRSELKYEIDGVVIKVNKKALQERL 301

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++NATLHN
Sbjct: 302 GFVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHN 361

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L            ++VGD V+++RAG+VIP++  +++ +R  DA+   FP+ CP
Sbjct: 362 ADEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLEQRPSDAKEIVFPTMCP 410

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           IC S + R          A  RCTGGL C AQ+ + +KHF SR A +I+GLG + +D   
Sbjct: 411 ICDSHIERVEGE------AVARCTGGLVCQAQRKQAIKHFASRKALDIDGLGDKIVDQLV 464

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             E     I+ PAD+F L++    S  ++      G  S  NL  +++  +  +L +F++
Sbjct: 465 DRE----LIKTPADLFILKQGHFESLERM------GPKSAKNLVAALDDAKTTTLAKFLY 514

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGIR VG   A++LA ++L+ +N                  LI V  VG+I+A+ +  F
Sbjct: 515 SLGIREVGEATAQNLANHFLTLENVIDA----------SIEQLIEVSDVGEIVAKHVRGF 564

Query: 616 YQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +    N+  V  L+ + ++             +     V TGTL  + R+ A+  + QLG
Sbjct: 565 FTEEHNLTVVNELIAQGINWPQLTAPSEQEQPLAGLTYVLTGTLNTLNRNDAKARLQQLG 624

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A VS  +S KTD ++ G+  GSKL KAQ+LG++I+ E+  + LL+ +N
Sbjct: 625 AKVSGSVSAKTDALVAGEKAGSKLTKAQELGIEILTEDDLITLLETHN 672


>gi|229003296|ref|ZP_04161126.1| DNA ligase [Bacillus mycoides Rock1-4]
 gi|228757914|gb|EEM07129.1| DNA ligase [Bacillus mycoides Rock1-4]
          Length = 669

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 391/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E+A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD+++ +  E
Sbjct: 58  DSPTVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+FV  A RGDG +GED++  ++ I  IP  L   +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIPLRLKEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LNDE    G   +ANPRNAA+G LR+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNDEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC    AC AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACDSELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD++ L + Q     +      FG+ S + L  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYPLTQEQLLQLER------FGEKSASKLVQAIETSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+LA+++ +  +  +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATEEELK----------EINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++ N   +  ++   +       +       +N++S    K +V TG L+ + R +
Sbjct: 555 SIVTYFDNEDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ + +LG  V+  +S+ TD+++ G+  GSKL +A++  +++ NEE+FL  L +
Sbjct: 615 AKKKIEELGGKVAGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFLQELNK 669


>gi|206974389|ref|ZP_03235306.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97]
 gi|217957864|ref|YP_002336408.1| NAD-dependent DNA ligase LigA [Bacillus cereus AH187]
 gi|254781553|sp|B7HSW5|DNLJ_BACC7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781554|sp|B9J1L6|DNLJ_BACCQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206747629|gb|EDZ59019.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97]
 gi|217064176|gb|ACJ78426.1| DNA ligase, NAD-dependent [Bacillus cereus AH187]
          Length = 669

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++ ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|206895761|ref|YP_002246502.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM
           5265]
 gi|254781298|sp|B5Y6V5|DNLJ_COPPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206738378|gb|ACI17456.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM
           5265]
          Length = 666

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/713 (30%), Positives = 374/713 (52%), Gaps = 51/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+A+K +  L + I YH+  YY    P I D EYD L R    +   FP+      P
Sbjct: 1   MTREEAKKRIERLRELIEYHNYRYYVLDSPEISDEEYDKLYRELVTLEKQFPEFI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G         VTH +P LSL+  +  ++++ F  R+     +     + +  E
Sbjct: 58  DSPTQRVGAPPAKEFATVTHEVPMLSLDNAFTEDEIKAFDQRVRSALNQ---QHVEYFCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
            K+DG  +++ YE G FV  + RG+G+ GEDV+A ++ I TIP  L   NIP ++E+RGE
Sbjct: 115 HKLDGLAVSLLYENGLFVRGSTRGNGYVGEDVTANLKTIKTIPLRLKGENIPPVVEIRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
            ++   DF ALN++  A+G+  +ANPRNAA+G +R+L+ +    R L F  +G G    +
Sbjct: 175 AFMMLRDFEALNEQRQALGQPLFANPRNAAAGSIRQLDSSITAQRKLYFMPYGFGLVQGM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q   L++ +  GF +N   R+A++    + +       R  LP+  DG+V KV+  
Sbjct: 235 DFETQERFLKQCQEWGFRINEHNRKASSIEEALEFIRYWTEHRVELPFPADGVVIKVNNL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
                LG  A +PR+ I++KF  ++  T+L D+  Q+GRTGI+TPVA LEPV + GA ++
Sbjct: 295 RYWDILGTTAHAPRYAIAYKFPAEEKETKLKDVVFQVGRTGIITPVAMLEPVVLDGATVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN D ++ L           D+R GD V +KRAG VIP+++ +   +R    +   
Sbjct: 355 RATLHNFDIVRQL-----------DVRKGDVVKLKRAGMVIPEIIGVAAEKRTGKEEQIE 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C      D         A  +C   + C AQ    L H+ SRDA +I+GLG+ 
Sbjct: 404 PPTTCPVCGGPTEWD--------GAYLKCVN-ITCPAQLKGHLLHWASRDAMDIDGLGES 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++           ++  AD++ L  +   +  ++         S T LY++I + ++  
Sbjct: 455 IIENLVD----MGLVKNIADLYKLSVQDLLTLPRLAQ------RSATKLYENIQRSKDRP 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ LGI  VG + A+ LA+++ S         + +            +  +G   A
Sbjct: 505 FFRVLYGLGIPRVGLKTAQMLAEHFGSINALLNATMDEL----------TSIEGIGTDTA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           + I++  Q+P+    ++ L    +  +   ++++   ++    VFTGTL  + R  A + 
Sbjct: 555 ETILKALQSPQVHELIDQLK---TLGLKMEQESIEGPLKGLTFVFTGTLTSMSRGDAAKL 611

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           V  LG  V++ +S+  D ++VG++PGSKL+KAQ+LG+ I++EE FL ++++ +
Sbjct: 612 VQSLGGKVASSVSKNVDYVVVGEDPGSKLDKAQKLGLTIIDEEAFLKMVKREH 664


>gi|229159446|ref|ZP_04287464.1| DNA ligase [Bacillus cereus R309803]
 gi|228624017|gb|EEK80825.1| DNA ligase [Bacillus cereus R309803]
          Length = 669

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQENLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDGLVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEIMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|228919228|ref|ZP_04082598.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840335|gb|EEM85606.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 669

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 385/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R    + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGKEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|42779416|ref|NP_976663.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 10987]
 gi|81411242|sp|Q73EM3|DNLJ_BACC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|42735332|gb|AAS39271.1| DNA ligase, NAD-dependent [Bacillus cereus ATCC 10987]
          Length = 669

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDVNVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVKAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|229083590|ref|ZP_04215919.1| DNA ligase [Bacillus cereus Rock3-44]
 gi|228699722|gb|EEL52378.1| DNA ligase [Bacillus cereus Rock3-44]
          Length = 669

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/715 (33%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E+A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEKAKQRIEELRDMLNACNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLTE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPTVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDSANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+FV  A RGDG +GED++  ++ I  IP  L   +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIPLRLKEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLADVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                + L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IVSHSDSLNFLGELGFKTNPNRRTCETIEDVITYVEEWQEKRPDLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++ ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC    AC AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPTCDSELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD++ L + Q     +      FG+ S + L  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYPLTQEQLLQLER------FGEKSASKLVQAIEASKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+LA+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDLLVKATEEELK----------EINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SIVTYFDNEDVLELLQQFKEYGVNMTYKGIKRADLQNVESYFAGKTIVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ + +LG  V+  +S+ TD+++ G+  GSKL +A++  +++ NEE+FL  L +
Sbjct: 615 AKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFLQELNK 669


>gi|309792382|ref|ZP_07686850.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6]
 gi|308225603|gb|EFO79363.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6]
          Length = 674

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/714 (35%), Positives = 379/714 (53%), Gaps = 49/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +  + +  L   +  H+  YY    P + D+EYDAL R    +    P+L     P
Sbjct: 1   MAESELVQRIERLRALLREHNYRYYVLDDPNVSDAEYDALMRELRHLEATHPELC---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G  +     KV H    LSL   ++  DL  +  R+ +      D  + + +E
Sbjct: 58  DSPTQRVGAPVTSQFGKVRHPQAMLSLGNAFDEADLHAWRERVLKLLG--ADTPLAYVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIE 186
           PKIDG  I++ Y  G+F   A RGDG  GEDVSA +R +  IP +L        IP  IE
Sbjct: 116 PKIDGLAISLTYRAGRFELGATRGDGEVGEDVSANLRTVRGIPLLLRTETPDTPIPTSIE 175

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEVY+   DF ALN  + + G K +AN RN+A+G LR+ +P     R L FF + +G 
Sbjct: 176 VRGEVYMRSADFEALNKRLASSGEKIFANARNSAAGSLRQKDPAITANRPLRFFAYQVGP 235

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              +    Q++ L  +R LGFPVN   R+ + F  ++ Y     + R +L ++ DG+V K
Sbjct: 236 VEGVELTSQWQTLAYLRDLGFPVNRDARRFDDFAAVLDYCRAWMARRDSLEFEADGIVIK 295

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +D+F+ Q++LG   R PRW I+ KF  ++A+TRL  I + +GRTG+LTP A LEPV IGG
Sbjct: 296 IDDFAQQRELGVVGRDPRWAIAFKFPAREATTRLQAITVNVGRTGVLTPGAELEPVVIGG 355

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             + NA+LHN DYI             RDIRVGD V VKRAG+VIP V+  I++ R    
Sbjct: 356 VTVRNASLHNADYI-----------AERDIRVGDYVTVKRAGDVIPYVIGPILSRRDGSE 404

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           QP+SFP+ CP C + + R          AA RC     C AQ + R++H+VSR A +I G
Sbjct: 405 QPWSFPTTCPACGTALERVEGE------AAWRCPNFGICPAQLVRRVEHYVSRGALDIVG 458

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G++Q + F      A  I   AD++ L           + + GFG   + NL  +I + 
Sbjct: 459 IGEKQAELFV----TAGLIADVADLYALHMHH------FQGMEGFGPKKIANLITAIEES 508

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L+R +  LGIR VG+  A++LA  Y S        + I+A    D     ++  +G
Sbjct: 509 KTRPLDRLLVGLGIRFVGSVAAQTLANQYGSL-------DAIMAATQADLE---QIEGIG 558

Query: 606 DIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++A ++V+F+Q+P N   VE L    ++ + G   +  S  +  K  V TGTL  + R 
Sbjct: 559 PVLAASVVDFFQHPENRALVEKLRAAGLTLTGGVPRQLQSQNLSGKTFVLTGTLPTLTRE 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A E +   G  +S  +S+KT  ++ G + GSKL KA QLGV +++E     L+
Sbjct: 619 QAAEMILAHGGKLSESVSKKTSYVVAGASAGSKLAKATQLGVPVLDEAGLRELV 672


>gi|30018549|ref|NP_830180.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 14579]
 gi|229125792|ref|ZP_04254818.1| DNA ligase [Bacillus cereus BDRD-Cer4]
 gi|81436035|sp|Q81IP2|DNLJ_BACCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29894090|gb|AAP07381.1| NAD-dependent DNA ligase [Bacillus cereus ATCC 14579]
 gi|228657649|gb|EEL13461.1| DNA ligase [Bacillus cereus BDRD-Cer4]
          Length = 669

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|91775756|ref|YP_545512.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
 gi|123254532|sp|Q1H1G6|DNLJ_METFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91709743|gb|ABE49671.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
          Length = 693

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/718 (35%), Positives = 384/718 (53%), Gaps = 47/718 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +     +++ +L   I  +D  YY  + P + DSEYD + R   A+  A P+L     P+
Sbjct: 13  APAGLAEKVEALRATIRRYDYEYYVLNAPSVPDSEYDRVFRELKALEDAHPELV---TPD 69

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQK-KDDNSIFFT 129
            P  ++GG     L  V H +P LS+E   +   +    F  R+ +      +D  I + 
Sbjct: 70  SPTQRVGGAAMAELMPVRHHVPMLSIETETDTTPQGAYNFDARVRKKLGLLPEDGPIEYA 129

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E K DG  +++RYE G  V AA RGDG  GEDV+  IR +  IP  L    PE++EVRG
Sbjct: 130 AELKFDGLAMSLRYEHGLLVQAATRGDGEVGEDVTHNIRTMRQIPLQLHGEAPEVLEVRG 189

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY+S+ DF   N      G+    NPRN A+G +R+L+P     R L+FF +GLG+T  
Sbjct: 190 EVYMSRPDFERYNARQREHGKPTLVNPRNGAAGSIRQLDPRLAAQRPLSFFAYGLGETKG 249

Query: 249 IF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   ++L  ++ LG PV N          + +++  + + R  LPYDIDG+VYKV+
Sbjct: 250 WQVPLTHAQVLDALKALGLPVCNERAVGMGAEALAAFHQAISAKRDQLPYDIDGVVYKVN 309

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ++LG R+R P W ++HKF  ++  T L  ID+Q+GRTG +TPVARL+PV +GG  
Sbjct: 310 RLDLQRELGFRSREPNWAVAHKFPAQEEMTVLEHIDVQVGRTGAITPVARLKPVFVGGVT 369

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHN+D I             +D+R+GD V+V+RAG+VIP+VV +I   R   +QP
Sbjct: 370 VTNATLHNQDEIDR-----------KDVRIGDTVVVRRAGDVIPEVVSVIKERRPAGSQP 418

Query: 428 F----SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +    +    CP+C S  VR          AA RCTGGL C+AQ+ + + HF SR A +I
Sbjct: 419 YILLDAIGGLCPVCGSHAVRLPEE------AAVRCTGGLFCAAQRKQAILHFASRRAMDI 472

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++ +D           +   AD++   +    +      +      S  NL D++ 
Sbjct: 473 EGLGEKLVDQLVDQNM----VETLADLYDPGKINLETL---SGLDRMAMKSAQNLLDALQ 525

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +  +L RFI++LGIR+VG   A+ LA+++              A    D  +L +VP 
Sbjct: 526 KSKQATLNRFIYALGIRNVGEATAKDLARHFGRLD----------ALQAADVDTLQQVPD 575

Query: 604 VGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           VG ++A++I EF+    N   +       +  S    +   SS++E K  V TGTL  + 
Sbjct: 576 VGPVVARSIAEFFAEEHNREVIRKLRDAGIHWSETDGQPASSSKLEGKTFVLTGTLPTMS 635

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R +A+E +   G  VS  +S+KT  ++ G + GSKL KAQ+LG+ I++EE  L LL +
Sbjct: 636 RDEAKEKIEAAGGKVSGSVSKKTSYVVAGSDAGSKLAKAQELGLAILDEEGLLSLLAE 693


>gi|160875869|ref|YP_001555185.1| DNA ligase, NAD-dependent [Shewanella baltica OS195]
 gi|190359285|sp|A9L5Z1|DNLJ_SHEB9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160861391|gb|ABX49925.1| DNA ligase, NAD-dependent [Shewanella baltica OS195]
 gi|315268060|gb|ADT94913.1| DNA ligase, NAD-dependent [Shewanella baltica OS678]
          Length = 685

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/710 (35%), Positives = 382/710 (53%), Gaps = 51/710 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  + 
Sbjct: 12  EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 71  --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRVTDK-----VGEVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALND   A   K + NPRNAA+G LR+L+      R L F+ + LG   
Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVE 243

Query: 248 E---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  +E LQ+++  G P+++ ++       +  YY ++ + RS L ++IDG+V 
Sbjct: 244 PDSHPLAKTHFEQLQQLKSWGLPISSEIKVCAELSQVYDYYKDILTRRSDLAFEIDGVVM 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 304 KVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I  L            I+VGD V+++RAG+VIP++V I+   R   
Sbjct: 364 GVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPET 412

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A    FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 413 ATDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIEA 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S            A        L  V  V
Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLD----------ALRVATVEQLTEVEDV 566

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G ++AQ +  F+  P N+  ++AL+   V           +  ++ +  V TGTL ++ R
Sbjct: 567 GAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+M+E++
Sbjct: 627 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676


>gi|229154059|ref|ZP_04282184.1| DNA ligase [Bacillus cereus ATCC 4342]
 gi|228629339|gb|EEK86041.1| DNA ligase [Bacillus cereus ATCC 4342]
          Length = 669

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQQSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELK----------EINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKNIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|293603951|ref|ZP_06686365.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
 gi|292817644|gb|EFF76711.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
          Length = 700

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/724 (35%), Positives = 392/724 (54%), Gaps = 68/724 (9%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L  E+  H+  YY Y +P I D+EYD L R+ +A+    P+L     P  P  ++G  
Sbjct: 15  AHLRAELEQHNVRYYVYDEPSISDAEYDGLMRQLEALEAEHPELI---TPESPTQRVGAA 71

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSIFFTLEPKIDGT 137
              +   V+H++P LSL   +  E++  F  R+    +            +  E K+DG 
Sbjct: 72  PVSAFGSVSHAVPMLSLNNAFAEEEVVAFDRRVTDTLRGAGLLGPAQQADYFCELKLDGL 131

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++RYE G+ V AA RGDG +GEDV++ IR I  IP  L    P+++EVRGEV +++ D
Sbjct: 132 AISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGAAPKVLEVRGEVLMNRAD 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK----------- 245
           F  LN+       K + NPRNAA+G LR+L+P     R L FF +G G+           
Sbjct: 192 FEKLNEAQARRDEKIFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLPGKQSGL 251

Query: 246 ----------TSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRST 294
                      S++  K    ML  +  LG PVN     +A    G++++Y ++  +R++
Sbjct: 252 FDEATAGAGQASQLPEKSHGAMLAWLHELGLPVNLKHNDRATGAEGLMAFYAKVGELRAS 311

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPYDIDG+VYKVD    QK LG  AR+PR+ ++HKFA ++A+T LLDI++Q+GRTG +TP
Sbjct: 312 LPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGAITP 371

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG  +TNATLHNED I+            +D+R GD V+V+RAG+VIP+V+
Sbjct: 372 VARLKPVFVGGVTVTNATLHNEDEIRR-----------KDVRKGDTVIVRRAGDVIPEVL 420

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             ++ +R  DAQ F  P+ CP+C S + R  +          RCTGGL C+AQ+ + L H
Sbjct: 421 GPVLEKRPDDAQQFVMPTACPVCGSAIERLEDETIA------RCTGGLFCAAQRKQTLWH 474

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
             SR A +IEGLG++ +D    S      ++  AD+++L+  +     ++         S
Sbjct: 475 AASRKALDIEGLGEKLVDQLVDSGR----VKTLADLYSLRPLELVGLDRMGQ------KS 524

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL  +I+K R  +L R +F+LGIRHVG   AR +A+++ S                 D
Sbjct: 525 ADNLVAAIDKARAPALNRLLFALGIRHVGETTARDVARHFGSIDAIMDA----------D 574

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
             +L  VP VG ++A +I  F+    N   +E L  +    +        + +  K  V 
Sbjct: 575 EEALSSVPDVGPVVAASIRRFFAEQHNRDVIEQLKAQGVNPVAEA-APQGTTLAGKTFVL 633

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL    R +A  ++   G  V+  +S+KT  ++ G+  GSKL KAQ+LGV +++E+  
Sbjct: 634 TGTLPNWTREEASMHIQAAGGKVTGSVSKKTAYLVAGEEAGSKLTKAQELGVTVLDEDAL 693

Query: 715 LFLL 718
             LL
Sbjct: 694 KALL 697


>gi|148658591|ref|YP_001278796.1| DNA ligase [Roseiflexus sp. RS-1]
 gi|166216236|sp|A5V1U3|DNLJ_ROSS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148570701|gb|ABQ92846.1| DNA ligase, NAD-dependent [Roseiflexus sp. RS-1]
          Length = 726

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/733 (35%), Positives = 386/733 (52%), Gaps = 62/733 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +   + + +L ++I YH+  YY   +P+I D+EYDAL R   A+  A P+L     P
Sbjct: 1   MNNDHLTRRVEALREQIRYHNYRYYVLDEPVISDAEYDALMRELRALEAAHPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G        KV H +P LSL    +  ++R +  R+ R     +D  + F +E
Sbjct: 58  DSPTQRVGAPPGEQFAKVQHVVPMLSLANASDEAEVRAWYDRVVRLLG--NDARVAFVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----------- 180
           PKIDG  +T+ Y  G  V  A RGDG +GEDV+A +R IP IP  L              
Sbjct: 116 PKIDGLAVTLIYRNGILVRGATRGDGETGEDVTANLRTIPGIPLRLGAFASNPEGQTNGA 175

Query: 181 -----IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR- 234
                IP +IEVRGEVY+   DFL LN+++ A G K  ANPRNAA+G LR+ +P    R 
Sbjct: 176 PVQAVIPPLIEVRGEVYMRIADFLRLNEQLAASGEKVAANPRNAAAGSLRQKDPAITARR 235

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L FF +G+G+   +  + Q+E L  +R LGFPVN   R+       ++Y  E  + R  
Sbjct: 236 PLRFFAYGIGQIEGVQVQTQWETLNLLRTLGFPVNRDARRFERLDDALAYCREWMTRRDE 295

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L Y++DG+V K+D  + Q QLG   R PRW I+ KF  ++A +RL+DI + +GRTG++TP
Sbjct: 296 LEYEVDGVVIKIDSLAQQAQLGVVGRDPRWAIAFKFPAREAVSRLIDIVVNVGRTGVITP 355

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A +EPVNIGG  + NA+LHN DYI             RDIR+GD V+VKRAG+VIP +V
Sbjct: 356 NAVIEPVNIGGVTVRNASLHNADYI-----------AERDIRIGDYVIVKRAGDVIPYIV 404

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             IV  R    +P+  P+ CP C + + R           A+RC     C AQ   R++H
Sbjct: 405 GPIVARRDGSERPWQMPATCPACGTPLERAEGE------VAYRCPNFGICPAQITRRIEH 458

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I G+G++Q+  F +       ++  AD++TL            N+ G+G   
Sbjct: 459 FVSRGAMDIAGIGEKQVQLFVER----GWVQDVADLYTLTPDH------FANVEGYGPKR 508

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
           V NL  +I   +N  L R I  LGIR+VG  +A+ LA ++ S    A    + I      
Sbjct: 509 VANLLSAIAGSKNRPLHRLIVGLGIRYVGEVVAQILADHFGSLDALAAASADEIDA---- 564

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKL 652
                 +  +G  IA ++  ++  P +   +  L +    +  +     S  + +  K  
Sbjct: 565 ------LEGIGPAIAASVAAYFARPESKALIAKLKRAGVRTEAQETARASRGNALAGKTF 618

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNE 711
           V TGTL  + R +A   +T  G  VS  +S+KTD +++G  P G+K  KAQ+LG+ +++E
Sbjct: 619 VITGTLPSMSREEASALITAHGGKVSGSVSKKTDYLVIGAEPGGTKFAKAQELGIPMIDE 678

Query: 712 EQFLFLLQQYNTT 724
              L L+    T 
Sbjct: 679 AGLLALIGSGRTA 691


>gi|228956728|ref|ZP_04118514.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229143090|ref|ZP_04271523.1| DNA ligase [Bacillus cereus BDRD-ST24]
 gi|296501121|ref|YP_003662821.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171]
 gi|228640363|gb|EEK96760.1| DNA ligase [Bacillus cereus BDRD-ST24]
 gi|228802916|gb|EEM49748.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296322173|gb|ADH05101.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171]
          Length = 669

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDSANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|229107967|ref|ZP_04237594.1| DNA ligase [Bacillus cereus Rock1-15]
 gi|228675470|gb|EEL30687.1| DNA ligase [Bacillus cereus Rock1-15]
          Length = 669

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+LNP     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLNPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|90579891|ref|ZP_01235699.1| DNA ligase [Vibrio angustum S14]
 gi|90438776|gb|EAS63959.1| DNA ligase [Vibrio angustum S14]
          Length = 670

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 395/696 (56%), Gaps = 47/696 (6%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
            YH   YY    P I D+EYD + ++   I    P+       + P  ++GG       +
Sbjct: 17  DYHGHRYYVEDNPEIPDAEYDRMMQQLIKIEADHPEWITV---DSPSQRVGGAALEGFTQ 73

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H I  LSL+  +N +DLR F  R+    +     ++ +  EPK+DG  +++ YE G  
Sbjct: 74  VKHEIAMLSLDNAFNDDDLRAFQKRLQDRLRS--GATLSYCCEPKLDGLAVSLMYENGVL 131

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GE+++  +R I  IP  L   + PE +EVRGEV++ K  F ALN + + 
Sbjct: 132 VQAATRGDGATGENITHNVRTIRAIPLKLQGDDWPERLEVRGEVFMPKKGFEALNAKALK 191

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265
            G K +ANPRNAA+G LR+L+P    TR L+F+ + +G       A  QYE L +++  G
Sbjct: 192 KGDKAFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVDGRELANTQYERLCQLKAWG 251

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            P+   +R+ ++   ++SY+  +   R +L Y+IDG+V KVD+   Q+QLG  AR+PRW 
Sbjct: 252 LPMCPEIRKVDSIEDVISYHQSIGEKRQSLGYEIDGVVIKVDDVDTQQQLGFVARAPRWA 311

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NATLHN D +  L   
Sbjct: 312 IAYKFPAQEEMTILNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEVARL--- 368

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    + +GD V+++RAG+VIP++  ++ + R  +AQ   FP+ CP+CQS+V R  
Sbjct: 369 --------GVMIGDTVIIRRAGDVIPQIASVVESRRPENAQAIVFPTECPVCQSKVERIE 420

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RCTGGL C AQ+ E LKHFVSR A +++G G++ ++     E     + 
Sbjct: 421 GE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDREM----VT 470

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
            PAD+F     + T   ++      G  S   L D++N  +  +L RFI SLGIR VG  
Sbjct: 471 TPADLFKFSAGEVTVLERM------GPKSAQKLVDALNASKLTTLPRFIHSLGIREVGEA 524

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A +LA Y+ + ++ +Q               LI VP VGDI+A  I  F++   N+  V
Sbjct: 525 TAANLANYFETLESISQATKE----------QLIEVPDVGDIVAAHIFNFFREEHNMVVV 574

Query: 626 EALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
             L +     P I + +++V   ++ K +V TG+L ++ R  A+  + +LGA V+  +S+
Sbjct: 575 NELQEVGIHWPEIEKRDEDVELPLDGKVVVLTGSLSQLTRSDAKAALQKLGAKVTGSVSK 634

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KTD+++ G+  GSKL KAQ+LG++I +E++ + L+ 
Sbjct: 635 KTDLLVAGEAAGSKLTKAQELGIEIWDEQKLVDLMA 670


>gi|217972882|ref|YP_002357633.1| DNA ligase, NAD-dependent [Shewanella baltica OS223]
 gi|254781416|sp|B8EEK5|DNLJ_SHEB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217498017|gb|ACK46210.1| DNA ligase, NAD-dependent [Shewanella baltica OS223]
          Length = 685

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/710 (35%), Positives = 381/710 (53%), Gaps = 51/710 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  + 
Sbjct: 12  EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 71  --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRVTDK-----VGEVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALND   A   K + NPRNAA+G LR+L+      R L F+ + LG   
Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVE 243

Query: 248 E---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  +E LQ+++  G PV++ ++       +  YY ++ + RS L ++IDG+V 
Sbjct: 244 PDSHPLAKTHFEQLQQLKSWGLPVSSEIKVCAELSQVYDYYKDILTRRSDLAFEIDGVVM 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++   Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 304 KVNDIDQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN + I  L            I+VGD V+++RAG+VIP++V I+   R   
Sbjct: 364 GVTVSNATLHNANEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPET 412

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A    FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 413 ATDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIEA 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S            A        L  V  V
Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLD----------ALRVATVEQLTEVEDV 566

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G ++AQ +  F+  P N+  ++AL+   V           +  ++ +  V TGTL ++ R
Sbjct: 567 GAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSAEAQPLKGQTWVLTGTLNQLNR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+M+E++
Sbjct: 627 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676


>gi|5733399|gb|AAD49562.1|AF126866_1 NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis]
          Length = 672

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/707 (34%), Positives = 385/707 (54%), Gaps = 45/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++++ L   +  H+  YY    P I DSEYD L R   A+    P+   +   + P  K+
Sbjct: 7   EQVNHLRIILEQHNYNYYVLDTPSIPDSEYDRLLRELSALETEHPEFLTA---DSPTQKV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG       +V H +P LSL+  ++ E+   F  RI       D   + F  EPK+DG  
Sbjct: 64  GGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKERLMSTD--ELTFCCEPKLDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           ++I Y  G  V AA RGDG +GE+++  ++ I  +P  L  + P+ +EVRGEV++    F
Sbjct: 122 VSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEVFMDSAGF 181

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQYE 256
             LN E    G K + NPRNAA+G LR+L+      R L F+ +  G        +  Y+
Sbjct: 182 DKLNTEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGNIPEDHYQ 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K+   G P+    +        ++YY ++ + RS L Y+IDG+V K+++ +LQ++LG
Sbjct: 242 QLEKLTDWGLPLCPETKLVEGPKAALAYYRDILTRRSELKYEIDGVVIKINQKTLQERLG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW I++KF  ++  T+LLD+D Q+GRTG +TPVARL+PV +GG  ++NATLHN 
Sbjct: 302 FVARAPRWAIAYKFPAQEEITQLLDVDFQVGRTGAITPVARLKPVFVGGVTVSNATLHNS 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D +  L            ++VGD V+++RAG+VIP++  +++  R  DA+   FP+ CPI
Sbjct: 362 DEVARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPTTCPI 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V +          A  RCTGGL C AQ+ + +KHF SR A +I+GLG + +D    
Sbjct: 411 CDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLVD 464

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I+ PAD+F L++    S  ++      G  S  NL  ++ + +  +L +F++S
Sbjct: 465 RE----LIKTPADLFILKQGHFESLERM------GPKSAKNLVTALEEAKGTTLAKFLYS 514

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR  G   A++LA ++L+ +N            N    SL +V  VG+I+A  +  F+
Sbjct: 515 LGIREAGEATAQNLANHFLTLENV----------INASIDSLTQVSDVGEIVAAHVRGFF 564

Query: 617 QNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
               N+  V AL+ + V+             +     V TGTL  + R+ A+  + QLGA
Sbjct: 565 DEEHNLAVVNALIDQGVNWPALSAPSEEEQPLAGLTYVLTGTLNTLNRNDAKARLQQLGA 624

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            VS  +S KTD ++ G+  GSKL KAQ LG+ I+ E++ + LL ++N
Sbjct: 625 KVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTEDELIELLIKHN 671


>gi|324324305|gb|ADY19565.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 669

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|327438552|dbj|BAK14917.1| NAD-dependent DNA ligase [Solibacillus silvestris StLB046]
          Length = 665

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 390/713 (54%), Gaps = 56/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  + ++ L + +  +   YY   KP++ DS YD L     A+  A P+      P+ 
Sbjct: 1   MNEIEQRIAELNKLLHEYGYAYYVLDKPVVEDSVYDQLLHELIALEEANPEFIY---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KVTH    LSL   +N EDLR F  +I +   K       +  E K
Sbjct: 58  PTQRVGGMVLEGFKKVTHETAMLSLSNAFNEEDLRDFDRKIEQAIGKN----YSYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++RYE G FV  A RGDG  GED++A ++ I  IP  L LN P  +EVRGE Y+
Sbjct: 114 IDGLAISLRYENGVFVQGATRGDGTVGEDITANLKTIRAIP--LRLNEPVTLEVRGEAYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-KTSEIFA 251
            K  F  LN+     G + +ANPRNAA+G LR+L+P     R L+ F++ +G        
Sbjct: 172 PKKSFEKLNERRAENGEELFANPRNAAAGSLRQLDPKIAASRNLSTFIYAVGGDGESYGI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G +EML+ +  LGFP N       T   ++++  +    R  L Y+IDG+V KV+ ++ 
Sbjct: 232 DGHWEMLKYLEELGFPSNKEREYCETIEDVLAFIEKWTEARPNLSYEIDGIVIKVNRYAH 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A L PV + G  ++ A
Sbjct: 292 QDELGFTAKSPRWAIAYKFPAEEVITKLLDIELTVGRTGVITPTAILTPVLVAGTTVSRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +DIR+ D V+V++AG++IP++V +++ +R  DA P+  P
Sbjct: 352 SLHNEDLIR-----------EKDIRIDDTVIVRKAGDIIPQIVGVVLEQRPDDAVPYKMP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C   VVR           A RC     C AQ  E +KHFVSR+A NI+GLG++ +
Sbjct: 401 THCPACDEEVVRI------DTDVALRCVNP-QCPAQIAEGVKHFVSRNAMNIDGLGEKVV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +       I+  A ++ L   Q  +  ++         S TNL +++ + ++ SLE
Sbjct: 454 EQLLRE----GYIQDVAGLYELTVEQLINLERMGQ------KSATNLVEALIQSKDNSLE 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F LGIRHVG + A+ LA ++ +           +            +  +GD +A++
Sbjct: 504 RLLFGLGIRHVGEKAAKILAAHFETIDALMVATEEDLK----------DIHEIGDKMAES 553

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQKIQRHKAQ 667
           IV ++ N +    +E L         + +K V    ++    K +V TG LQ++ R++A+
Sbjct: 554 IVAYFANEQVQQLIERLKGFGLNMSYKGKKIVVEAGANPFAGKTIVLTGKLQQLTRNEAK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + QLG  V+  +S+KTD++IVG++ GSKLEKAQ LG++I +E   + L++Q
Sbjct: 614 AKIEQLGGTVAGSVSKKTDLVIVGEDAGSKLEKAQSLGIEIWDE---VRLIEQ 663


>gi|291483102|dbj|BAI84177.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. natto
           BEST195]
          Length = 668

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/715 (34%), Positives = 405/715 (56%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++    L + I+ +   YY   +P + D+EYD L +   AI    PDL     P
Sbjct: 1   MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KVTH  P LSL   +N +DLR F  R+ +       + + + +E
Sbjct: 58  DSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQAVG----DDVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  L +N    IEVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIP--LKMNRELSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+E I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 YMPKRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   ++      +++  +E+++ R+ LPY+IDG+V KVD   
Sbjct: 232 VETQSQGLDFLDELGFKTNQERKKCGDIEEVITLIDELQAKRADLPYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV+++V +R  + + FS 
Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L +       ++  +   G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFEEN----LVRNVADLYKLTK------ERVIQLERMGEKSTENLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  +     +          + V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEEL----------LAVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           A++ ++     +  +  L +    ++ +  K V +E        K +V TG L+++ R++
Sbjct: 554 AVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+ TD++I G+  GSKL KAQ+L +++ NEEQ +  L++
Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668


>gi|52841193|ref|YP_094992.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628304|gb|AAU27045.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 683

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/713 (34%), Positives = 385/713 (53%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 11  MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 67

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H  P LSL  ++  ++L+ FI R      +  +  + F  E
Sbjct: 68  DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 126

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P  L + N P++IEVRGE
Sbjct: 127 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 186

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G   + 
Sbjct: 187 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 246

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 247 KLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 306

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 307 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 366

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 367 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMI 415

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 416 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 469

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L          + N+   G+ S  NL  ++ K +  
Sbjct: 470 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 519

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   ++                  L+ +  +G + 
Sbjct: 520 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKAAT----------IEELMTLNDIGPVA 569

Query: 609 AQAIVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  IV F+    N+  ++    L    P   + + N  +    K +V TGTL  + R +A
Sbjct: 570 ASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 629

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL  + 
Sbjct: 630 KAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFLKWVN 682


>gi|254460861|ref|ZP_05074277.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2083]
 gi|206677450|gb|EDZ41937.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium HTCC2083]
          Length = 706

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/715 (41%), Positives = 445/715 (62%), Gaps = 14/715 (1%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
             I  LS+E+AR EL++L + ++  +  Y+    P + D+ YDALK+R  AI   FP L 
Sbjct: 4   TDITELSVEEARAELAALSKALNTANVAYHGKDNPDLSDANYDALKQRNAAIEDHFPTLV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    + P   +G  +     K+TH+   +SL   +  ED+  F   I ++    +D  +
Sbjct: 64  RE---DSPSKLVGAPVQDGFGKITHAQRMMSLGNAFTDEDVADFTQGIRKYLGLSNDRPL 120

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G  + AA RGDG +GEDV A    I  +P+ L  N PE+IE
Sbjct: 121 AFTAEPKIDGLSLSLRYENGTLIQAATRGDGTTGEDVLANALTIADVPKNL-ENAPEVIE 179

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           VRGEVY++  DF ALN   +  G K +ANPRNAA+G LR+L+     +R L FF +  G 
Sbjct: 180 VRGEVYMTHADFDALNARQVERGSKTFANPRNAAAGSLRQLDSEITKSRPLRFFAYAWGV 239

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S+  A  Q+  + +++ LGF  N   ++      ++ +Y +++  R+ L YDIDG+VYK
Sbjct: 240 LSDPLANTQHGAIARLKMLGFQTNPLTQRFENVVDLIKHYQQIEQQRAALGYDIDGVVYK 299

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ + Q +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 300 VDDLAYQSRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLSPVTVGG 359

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI+G D SG+++RGGRDIRVGD V + RAG+VIPK+ D+ +++R  D+
Sbjct: 360 VVVSNATLHNEDYIEGRDNSGELIRGGRDIRVGDWVQIYRAGDVIPKIKDVDLSKRPSDS 419

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF FP  CP CQS  +RD+        A  RC+GGL C AQ +E++KHFVSR AF+IEG
Sbjct: 420 SPFEFPKICPECQSAALRDVG------DAVRRCSGGLICPAQAVEKMKHFVSRGAFDIEG 473

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F+   DP   IR PADIFTL+ R     +K++N  G+G  S   L+ +I++R
Sbjct: 474 LGAKQVEMFY--HDPTLPIREPADIFTLKTRDAQQLSKLKNRDGWGAKSADKLFAAIDER 531

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           RNIS  R +++LG+RHVGA+ A  +A++Y S+  F   ++       D W  L+ +  VG
Sbjct: 532 RNISFARVLYALGLRHVGAQSASLIARHYGSWAVFVDAMDAASDQVGDAWDRLMSIDGVG 591

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A ++V  +  P    ++  +  E++  I   + +  S +  K +VF+GTL+K+ R +
Sbjct: 592 EIMASSLVTAFIQPGERASITRVTDELTI-IDAEKPDTDSPVTGKVVVFSGTLEKMTRAE 650

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+     LGA VS  +S KTDI+I G   GSK +KA +L ++ ++E+ +L L++ 
Sbjct: 651 AKARAEALGAKVSGSVSAKTDILIAGPGAGSKAKKAAELDIETLDEDSWLALIED 705


>gi|329576880|gb|EGG58365.1| DNA ligase [Enterococcus faecalis TX1467]
          Length = 676

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/716 (33%), Positives = 389/716 (54%), Gaps = 53/716 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+LQ +LG   ++PRW I++KF  ++A T + DI+  I  TG++TP A + PV + G  +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIDCTGVVTPTAVMAPVRVAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+
Sbjct: 355 SRASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG 
Sbjct: 404 EMPTHCPICHSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L   +        ++  AD++ L   Q  +  KI+      + S  N+Y +I   +  
Sbjct: 457 RVLAQMYDK----GLVKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER IF LGIRHVGA+ A+ LA+++      ++     I          + +  +G+ I
Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAEEI----------VALDSIGETI 556

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663
           A ++V +++N         +E     ++    R E+   V S  ++K +V TG L +  R
Sbjct: 557 ADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 617 EEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672


>gi|218230787|ref|YP_002365135.1| NAD-dependent DNA ligase LigA [Bacillus cereus B4264]
 gi|254781552|sp|B7H4U8|DNLJ_BACC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218158744|gb|ACK58736.1| DNA ligase (NAD(+)) [Bacillus cereus B4264]
          Length = 669

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMKYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|222110866|ref|YP_002553130.1| NAD-dependent DNA ligase [Acidovorax ebreus TPSY]
 gi|254781316|sp|B9MIW4|DNLJ_DIAST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221730310|gb|ACM33130.1| DNA ligase, NAD-dependent [Acidovorax ebreus TPSY]
          Length = 740

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/744 (33%), Positives = 384/744 (51%), Gaps = 81/744 (10%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++ +L ++++     YY    P + D+EYD   +   A+  A+PDL     P+ P  
Sbjct: 28  VAAKIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQELQALEGAYPDLV---TPDSPTQ 84

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFTLEPK 133
           ++ G +   L  V H +P LS+    + E    + F  R+ R  +   D   + +  EPK
Sbjct: 85  RVLGAVLDGLTPVRHRVPMLSIRTETDTEASGAQAFDARVRRELKLPPDAPPVEYVAEPK 144

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  +++RYE G+ V AA RGDG  GEDV+  +R I  IP  L   +P ++EVRGEVY+
Sbjct: 145 FDGLAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLPAGVPRVLEVRGEVYM 204

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT-----S 247
            + DF ALN+     G K + NPRNAA+G +R+L+      R L+FF +GLG+       
Sbjct: 205 RRADFDALNERQREKGDKTFVNPRNAAAGAVRQLDSGITAQRPLSFFAYGLGEVTPAAEG 264

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  + MLQ+++  GFPV   V+ A     +++++  + + R  LPYDIDG+VYKV+
Sbjct: 265 GPDFGTHFGMLQQLKEWGFPVAAQVQIAQGASELIAFHQRVGAERDALPYDIDGVVYKVN 324

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             +LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+GRTG LTPVARL PV +GG  
Sbjct: 325 SLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGVT 384

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN-------- 419
           +TNATLHN   ++            + +RVGD+V+V+RAG+VIP+VV ++          
Sbjct: 385 VTNATLHNLFELRR-----------KKVRVGDQVIVRRAGDVIPEVVGVVPAGAGLAVLA 433

Query: 420 -----------------------ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
                                   R P    F  P  CPIC S VVR+           H
Sbjct: 434 GSDALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVREPGE------VNH 487

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RC+GGL C AQ+ + + HF  R A +IEGLG++ +D   +       IR   D++ L   
Sbjct: 488 RCSGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVE----GHVIRTLPDLYRL--- 540

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                + +  +    + S  N+ D+++K +  +L RF+F LGIRHVG   A+ LA+++  
Sbjct: 541 ---GLSSLAQLDRMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHFGR 597

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPS 635
                                L++V  VG ++A+AI  F+  P N   VE L    V+  
Sbjct: 598 LDAIMDA----------GVEQLLQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWD 647

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
                   +  +    +V TGTL  + R  A++ +   GA V+  +S+KT  ++ G + G
Sbjct: 648 ESEPAAAATLPLAGMTVVLTGTLPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAG 707

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKL KAQ+LG+ +++E+    LL+
Sbjct: 708 SKLAKAQELGIPVLDEDGLRALLR 731


>gi|152981161|ref|YP_001353755.1| DNA ligase (polydeoxyribonucleotide synthase) [Janthinobacterium
           sp. Marseille]
 gi|166215814|sp|A6SZQ8|DNLJ_JANMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151281238|gb|ABR89648.1| DNA ligase (Polydeoxyribonucleotide synthase) [Janthinobacterium
           sp. Marseille]
          Length = 692

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/717 (35%), Positives = 375/717 (52%), Gaps = 47/717 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E           + L  E++ H+  Y+    P I D+EYD L R   A+  + P+L    
Sbjct: 19  EEPDASNPAARAAWLRDELNRHNYSYHVLDNPSIPDAEYDKLFRELQALETSHPELLVF- 77

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++G     +  +VTHS+P LSL   +  ED+  F  R+           I + 
Sbjct: 78  --DSPTQRVGALALSAFPQVTHSVPMLSLGNGFEDEDIIAFDKRVSDGLNST---EIEYA 132

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            E K DG  I +RYE G  V AA RGDG +GE+V+  IR +  IP  L +   P++++VR
Sbjct: 133 TELKFDGLAINLRYEDGILVEAATRGDGATGENVTTNIRTVRAIPLRLHTATPPKVLDVR 192

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEV + K D   LN      G K +ANPRNAA+G LR+L+      R L FF +G+G   
Sbjct: 193 GEVMMYKADLAKLNARQRDAGGKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYGIGMLE 252

Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                     +L     LG PV           G++ +Y  +   R TLPY+IDG+VYKV
Sbjct: 253 GAEMPPSHSALLDWYAELGLPVCAERAVVKGAAGLLEFYKAVGQKRPTLPYEIDGVVYKV 312

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +    Q+QLG  +R+PR+ I+HKF  ++A T +  I++Q+GRTG +TPVARL PV +GG 
Sbjct: 313 NRVEQQQQLGFVSRAPRYAIAHKFPAEEALTTVQGIEVQVGRTGAITPVARLAPVLVGGV 372

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +TNATLHNED ++            +DI++GD V+V+RAG+VIP+VV  +  +R  DAQ
Sbjct: 373 TVTNATLHNEDEVRR-----------KDIQIGDTVIVRRAGDVIPEVVAYVPEKRPVDAQ 421

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEG 485
           PF  P+ CP+C S +V+  +       A  RC+GG + C+AQ+   L HFVSR A ++EG
Sbjct: 422 PFVMPTNCPVCNSPIVKLEDE------AIARCSGGWVKCAAQRKGGLLHFVSRRAMDVEG 475

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG Q ++           I   AD++ L  R      ++       D S  N+  ++ K 
Sbjct: 476 LGDQLVEQLVDKHI----ITTAADLYKLGFRALAELDRMA------DKSAQNVMAALEKS 525

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +L RFI++LGIRHVG   A+ LA+++ + +   Q               L+ V  +G
Sbjct: 526 KSTTLARFIYALGIRHVGEATAKELARHFGNLEALLQASEE----------QLLEVADIG 575

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++AQ+I  F  +P N+  +E L            +N       K  V TGTL  + R +
Sbjct: 576 PVVAQSIRSFLSDPLNMELIEQLQAAGVRWPEHVVENKPKPFAGKTFVLTGTLPTLSRDQ 635

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A E +   G  V+  +S+KT  ++ G + GSKL KA++LG+ I++E   L LL  + 
Sbjct: 636 AAEKIEAAGGKVAGSVSKKTSYVVAGADAGSKLAKAEELGITILDESALLQLLDTHE 692


>gi|228937587|ref|ZP_04100225.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228970474|ref|ZP_04131125.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228977043|ref|ZP_04137446.1| DNA ligase [Bacillus thuringiensis Bt407]
 gi|228782660|gb|EEM30835.1| DNA ligase [Bacillus thuringiensis Bt407]
 gi|228789206|gb|EEM37134.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228822068|gb|EEM68058.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326938080|gb|AEA13976.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 669

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|153001196|ref|YP_001366877.1| DNA ligase, NAD-dependent [Shewanella baltica OS185]
 gi|166216241|sp|A6WPS5|DNLJ_SHEB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151365814|gb|ABS08814.1| DNA ligase, NAD-dependent [Shewanella baltica OS185]
          Length = 685

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/710 (35%), Positives = 381/710 (53%), Gaps = 51/710 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  + 
Sbjct: 12  EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 71  --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRVTDK-----VGEVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALND   A   K + NPRNAA+G LR+L+      R L F+ + LG   
Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVE 243

Query: 248 E---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  +E LQ+++  G P+++ ++       +  YY  + + RS L ++IDG+V 
Sbjct: 244 PDSHPLAKTHFEQLQQLKSWGLPISSEIKVCAELSQVYDYYKNILTRRSDLAFEIDGVVM 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 304 KVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I  L            I+VGD V+++RAG+VIP++V I+   R   
Sbjct: 364 GVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPET 412

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A    FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 413 ATDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L     T   ++      G  S TNL  +I  
Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIEA 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S            A        L  V  V
Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLD----------ALRVATVEQLTEVEDV 566

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G ++AQ +  F+  P N+  ++AL+   V           +  ++ +  V TGTL ++ R
Sbjct: 567 GAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+M+E++
Sbjct: 627 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676


>gi|89075460|ref|ZP_01161871.1| DNA ligase [Photobacterium sp. SKA34]
 gi|89048732|gb|EAR54303.1| DNA ligase [Photobacterium sp. SKA34]
          Length = 670

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/696 (35%), Positives = 395/696 (56%), Gaps = 47/696 (6%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
            YH   YY    P I D+EYD + ++   I    P+       + P  ++GG       +
Sbjct: 17  DYHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTV---DSPSQRVGGAALEGFTQ 73

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H I  LSL+  +N +DLR F  R+    +     +  +  EPK+DG  +++ YEKG  
Sbjct: 74  VKHEIAMLSLDNAFNDDDLRAFQKRLQDRLRS--GATFSYCCEPKLDGLAVSLMYEKGVL 131

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GE+++  +R I  IP  L   + PE +EVRGEV++ K  F  LN + + 
Sbjct: 132 VQAATRGDGATGENITHNVRTIRAIPLKLQGDDWPERLEVRGEVFMPKKGFEELNAKALK 191

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265
            G K +ANPRNAA+G LR+L+P    TR L+F+ + +G       A  QYE L +++  G
Sbjct: 192 KGDKAFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVDGRELANTQYERLCQLKAWG 251

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            P+   +R+ ++   +++Y+  +   R +L Y+IDG+V KVD+   Q+QLG  AR+PRW 
Sbjct: 252 LPMCPEIRKVDSIEEVIAYHQNIGEKRQSLGYEIDGVVIKVDDVDTQQQLGFVARAPRWA 311

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NATLHN D +  L   
Sbjct: 312 IAYKFPAQEEMTTLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEVARL--- 368

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    + +GD V+++RAG+VIP++  ++ + R  +AQ   FP+ CP+CQS+V R  
Sbjct: 369 --------GVMIGDTVIIRRAGDVIPQIASVVESRRPANAQAIVFPTECPVCQSKVERIE 420

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RCTGGL C AQ+ E LKHFVSR A +++G G++ ++     E     + 
Sbjct: 421 GE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDREM----VT 470

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
            PAD+F     + T   ++      G  S   L D++N  +  +L RFI+SLGIR VG  
Sbjct: 471 TPADLFKFSAGEVTVLERM------GPKSAQKLVDALNASKLTTLPRFIYSLGIREVGEA 524

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A +LA Y+ + ++ +Q   +           LI VP VG I+A  I  F++   N+  V
Sbjct: 525 TAANLANYFETLESISQATKD----------QLIEVPDVGGIVAAHIFNFFREEHNMVVV 574

Query: 626 EALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
             L +     P I + +++V   ++ K +V TG+L ++ R  A+  + +LGA V+  +S+
Sbjct: 575 NELQEVGIHWPEIEKIDEDVELPLDGKVVVLTGSLSQLTRSDAKAALQKLGAKVTGSVSK 634

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KTD+++ G+  GSKL KAQ+LG++I +E++ + L+ 
Sbjct: 635 KTDLLVAGEAAGSKLTKAQELGIEIWDEQKLVDLMA 670


>gi|157961514|ref|YP_001501548.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345]
 gi|190359287|sp|A8H376|DNLJ_SHEPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157846514|gb|ABV87013.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345]
          Length = 668

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 381/711 (53%), Gaps = 50/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + E++ L  E++ H+  YY    P I D+EYD L  R  A+    P+  R   P+ 
Sbjct: 1   MPAIQNEIAQLTAELNQHNYRYYVDDSPSIPDAEYDRLLNRLKALETEHPEFCR---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE      ++ H  P LSL+ +++ ++   F  RI     K     + +  EPK
Sbjct: 58  PTQRVGGEALAKFEQIKHLKPMLSLDNVFDEQEFTAFNQRIVDKTGK----DLSYCCEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G F  AA RGDG +GED++  +R I +IP  L   N P ++EVRGEV 
Sbjct: 114 LDGLAVSIVYRDGVFERAATRGDGQTGEDITENVRTIKSIPLTLRGDNFPPLVEVRGEVI 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-- 249
           +    F ALN+     G K + NPRNAA+G LR+L+     +R L F+ + LG       
Sbjct: 174 MPHKAFDALNERARVKGDKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETW 233

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A   Y  L+++R  G PV+  VR   T   +++YY +++  RS+L ++IDG+V KV++
Sbjct: 234 ELADSHYGQLEQLRSWGVPVSQEVRGCETVAEVMAYYYDIQQRRSSLEFEIDGVVVKVNQ 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q  LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  +
Sbjct: 294 IAHQLSLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            ++VGD ++++RAG+VIP++V ++  +R  DA+  
Sbjct: 354 SNATLHNADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAVVAEKRPDDAKDI 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S V R          A  RCTGGL C AQ+ E +KHF SR A +I+G+G 
Sbjct: 403 VFPAHCPVCDSEVERVEGE------AVTRCTGGLFCEAQRKEAIKHFASRKALDIDGMGD 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L     T   ++      G  S T L  +I   +  
Sbjct: 457 KVVEQLIDKE----LVESPADLFRLTASAMTMLERM------GMKSATKLVAAIEVAKQT 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR VG   A +LA Y+ + +          A         I+V  VG I+
Sbjct: 507 TFARFLYALGIREVGEATAANLAAYFKTLE----------ALKAASAEEFIKVDDVGTIV 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667
           A  +  F   P N+  ++ L++         E       ++ +  V TGTL ++ R+ A+
Sbjct: 557 AAHLAHFLAQPHNLEVIDKLVEAGIHWPAVEEVAEEDLSLKGQTWVLTGTLTQLNRNDAK 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+ TD ++ G   GSKL KAQ+LGVK+++EE  + +L
Sbjct: 617 AKLQALGAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDEEALIAIL 667


>gi|228906068|ref|ZP_04069957.1| DNA ligase [Bacillus thuringiensis IBL 200]
 gi|228853477|gb|EEM98245.1| DNA ligase [Bacillus thuringiensis IBL 200]
          Length = 669

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ S
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVS 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|221639033|ref|YP_002525295.1| DNA ligase [Rhodobacter sphaeroides KD131]
 gi|254781405|sp|B9KRK2|DNLJ_RHOSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221159814|gb|ACM00794.1| DNA ligase [Rhodobacter sphaeroides KD131]
          Length = 704

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/712 (42%), Positives = 438/712 (61%), Gaps = 17/712 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L+  +A  EL+ L + I   +  Y+ +  P I D++YDAL+ R  AI   FP+L R
Sbjct: 6   PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALRLRNRAIEEQFPELRR 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S   + P +++GG +     KV H +  LSLE  +++ ++  +I RI R+     D  + 
Sbjct: 66  S---DSPSDRVGGALAEGFAKVRHEVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYEKG+ V AA RGDG +GE+V+   R I  +P  L    P+++EV
Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTEL-DGAPDLLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    A G++ +ANPRNAA+G LR+L+P    +R L FF +  G  
Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q+E + ++  LGF  N   R       +++ + E++  R+ L YDIDG+VYKV
Sbjct: 240 SEPLAATQHEAIARLAALGFTTNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ++LG RA +PRW I+HKFA + A T+L  ID+Q+GRTG L+PVARL+PV +GG 
Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDVQVGRTGALSPVARLKPVTVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R   A 
Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C S  +R+         +  RCTGGL C AQQ+ERLKHFVSR AF+IEGL
Sbjct: 420 PYRFPETCPECGSEAIREPG------DSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++  ++       IR PADIF L  R +    ++EN  G+G  S  NL+ +I  RR
Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L R IF+LGIRHVG   A  LA +Y S+  F   +         +W  L+ +  VG 
Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A ++V  +       AVEAL   ++         V+S +  + +VFTGTL+K+ R +A
Sbjct: 590 VLATSLVTAFHQEAERAAVEALAAHLTVEDAEVRAPVASPVAGRIVVFTGTLEKMSRAEA 649

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA VS  +S +TD+++ G   GSK ++A  LG++ ++E+ +L L+
Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLI 701


>gi|77463176|ref|YP_352680.1| DNA ligase [Rhodobacter sphaeroides 2.4.1]
 gi|123730578|sp|Q3J355|DNLJ_RHOS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77387594|gb|ABA78779.1| DNA ligase [Rhodobacter sphaeroides 2.4.1]
          Length = 704

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/712 (42%), Positives = 438/712 (61%), Gaps = 17/712 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L+  +A  EL+ L + I   +  Y+ +  P I D++YDALK R  AI   FP+L R
Sbjct: 6   PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALKVRNRAIEEQFPELRR 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S   + P +++GG +     KV H +  LSLE  +++ ++  +I RI R+     D  + 
Sbjct: 66  S---DSPSDRVGGALAEGFAKVRHDVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYEKG+ V AA RGDG +GE+V+   R I  +P  L    P+++EV
Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTEL-DGAPDLLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    A G++ +ANPRNAA+G LR+L+P    +R L FF +  G  
Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q+E + ++  LGF  N   R       +++ + +++  R+ L YDIDG+VYKV
Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAQIERQRAALGYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ++LG RA +PRW I+HKFA + A T+L  IDIQ+GRTG L+PVARL+PV +GG 
Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R   A 
Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C S  +R+         +  RCTGGL C AQQ+ERLKHFVSR AF+IEGL
Sbjct: 420 PYRFPETCPECGSEAIREPG------DSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++  ++       IR PADIF L  R +    ++EN  G+G  S  NL+ +I  RR
Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYRDGMQRLENREGWGRKSAENLFAAIEARR 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L R IF+LGIRHVG   A  LA +Y S+  F   +         +W  L+ +  VG 
Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A ++V  +       AV+AL   ++         V+S +  K +VFTGTL+K+ R +A
Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGKIVVFTGTLEKMSRAEA 649

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA VS  +S +TD+++ G   GSK ++A  LG++ ++E+ +L L+
Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLI 701


>gi|260576789|ref|ZP_05844774.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2]
 gi|259021041|gb|EEW24352.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2]
          Length = 705

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/712 (42%), Positives = 430/712 (60%), Gaps = 18/712 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE L+  +A  E   L + ++  +  Y+Q   P + D+ YDA+KRR  AI   FP LA  
Sbjct: 7   IEQLTEAEAAVEWQELARAVAQANIDYHQNDAPKLTDATYDAMKRRLAAIEVLFPQLAT- 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P +K+G        KV H++  LSLE  ++  D+  F  R+ +F        + +
Sbjct: 66  ---DSPTSKVGAAPADGFAKVPHAVRMLSLENAFDDTDVTDFDDRVRKFLGHAA--PLTY 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE G  V AA RGDG  GE+V+   R I  IP+ L+   P ++EVR
Sbjct: 121 TAEPKIDGLSLSLRYEAGVLVQAATRGDGEVGENVTDNARTISDIPQSLT-GAPAVLEVR 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+S  DF ALN    A G K +ANPRNAA+G LR+L+ +    R L FF +  G  S
Sbjct: 180 GEVYMSHADFAALNSRQAARGEKTFANPRNAAAGSLRQLDASITAARPLRFFAYAWGALS 239

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E  A  Q E + ++  LGF  N   R   +   +++ Y E+++ R++L YDIDG+VYKV+
Sbjct: 240 EPLAATQLEAIARLAALGFATNPLTRACTSPDDLLAVYREIEAQRASLGYDIDGVVYKVN 299

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG RA +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG +
Sbjct: 300 DLALQARLGFRAATPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVV 359

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           + NATLHNEDYI G D+ G  +R G+DIR+GD V V RAG+VIPK+ +I + +R    + 
Sbjct: 360 VANATLHNEDYIAGRDSKGNPIRDGKDIRIGDWVQVYRAGDVIPKINNIDLEKRPKTVET 419

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F+FP+ CP C S  +R+         +  RCTGGL C AQ +ERLKHFVSR AF+IEGLG
Sbjct: 420 FTFPTICPQCGSDAIRE------DGDSVRRCTGGLICPAQAVERLKHFVSRAAFDIEGLG 473

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGDVSVTNLYDSINKRR 546
            +Q++ FF    P   ++ PADIFTL  R   S   K++N  G+G+ S TNL+ +I+++R
Sbjct: 474 AKQIEAFFND--PDLPLKTPADIFTLASRDAASPLKKLKNRDGWGEKSATNLFAAIDEKR 531

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I L R IF+LGIRHVG   A  LA +Y S+ NF   + +       DW  L  +  VG 
Sbjct: 532 SIPLHRLIFALGIRHVGESSAALLANHYGSWSNFEAAMTHAEIGQGADWADLTAIDGVGA 591

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A +++  +  P    A++AL+  ++           S +  K LVFTGTL+K+ R +A
Sbjct: 592 VLATSLITTFHQPAERAAIDALVAHLTVQ-DAAPVATDSPVAGKTLVFTGTLEKMSRAEA 650

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S KTD++I G   GSK + A+ LGV++++E  +L L+
Sbjct: 651 KARAESLGAKVAGSVSAKTDLVIAGPGAGSKAKAAEALGVQVIDEAAWLALI 702


>gi|206967609|ref|ZP_03228565.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134]
 gi|228950848|ref|ZP_04112971.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|229068048|ref|ZP_04201356.1| DNA ligase [Bacillus cereus F65185]
 gi|229077651|ref|ZP_04210281.1| DNA ligase [Bacillus cereus Rock4-2]
 gi|229176884|ref|ZP_04304280.1| DNA ligase [Bacillus cereus 172560W]
 gi|206736529|gb|EDZ53676.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134]
 gi|228606557|gb|EEK63982.1| DNA ligase [Bacillus cereus 172560W]
 gi|228705592|gb|EEL57948.1| DNA ligase [Bacillus cereus Rock4-2]
 gi|228715056|gb|EEL66923.1| DNA ligase [Bacillus cereus F65185]
 gi|228808777|gb|EEM55273.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 669

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 385/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|229042193|ref|ZP_04189947.1| DNA ligase [Bacillus cereus AH676]
 gi|228727128|gb|EEL78331.1| DNA ligase [Bacillus cereus AH676]
          Length = 669

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   ++SY  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVISYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKEIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|229148695|ref|ZP_04276945.1| DNA ligase [Bacillus cereus m1550]
 gi|228634703|gb|EEK91282.1| DNA ligase [Bacillus cereus m1550]
          Length = 669

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I K +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIEKSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMKYKGIKIADLQNVESYFVGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|253701546|ref|YP_003022735.1| DNA ligase, NAD-dependent [Geobacter sp. M21]
 gi|251776396|gb|ACT18977.1| DNA ligase, NAD-dependent [Geobacter sp. M21]
          Length = 668

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/710 (36%), Positives = 376/710 (52%), Gaps = 44/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A + +  L  EI  H+  YY+   P I D+EYDAL R    +  + PDLA    P
Sbjct: 1   MDKTAAAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASHPDLAL---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +V H+ P LSLE  +  +D+  F  R+ RF        I +  E
Sbjct: 58  DSPTGRVGGRPVAKFTQVRHTTPMLSLENAFTDKDIVDFDDRVKRFLGLSGQAEIGYVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  + + Y +G     + RGDG  GE+V+  ++ I  IP  L +   P ++ VRGE
Sbjct: 118 PKMDGVAVELVYREGLLAIGSTRGDGVVGEEVTQNLKTIKDIPLRLQTEEPPRLLTVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    F   N E    G  P+ANPRNAA+G LR+L+      R L+ F +  G+   +
Sbjct: 178 VYLPLEPFRKFNQEREEAGEPPFANPRNAAAGSLRQLDSKITAKRPLSIFCYAPGEVDGV 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q   L  +     PVN   +  +   G++ YY+EM   R  LPY+IDG+V KVD F
Sbjct: 238 AFDSQSHFLSTIPTWRIPVNPLTKLVSGVQGVLDYYHEMMEKRDDLPYEIDGVVVKVDRF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ+ LGE++RSPRW I+ KF  +QA+T + DI  Q+GRTG++TPVA LEPVN+ G +++
Sbjct: 298 SLQRDLGEKSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPVAHLEPVNVSGVMVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR GD V+V+RAG+VIP VV ++V +R        
Sbjct: 358 RATLHNWEEMER-----------KDIRRGDTVVVERAGDVIPAVVQVLVEKRQGSETLLP 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C   VVR           A RC G L C AQ LER+KHF +R A +I+GLG++
Sbjct: 407 VPQACPVCGGEVVRIPGE------VAVRCVG-LNCPAQALERVKHFAARRAMDIDGLGEK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     +     IR  ADI+ L         ++      G     NL +SI   +   
Sbjct: 460 FIEQLLNLK----LIRNVADIYRLTEEDFMRFERM------GKKLAENLLNSIAASKERE 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R IF+LGIRHVG   A+ LA  + S +N A      +            +  VG  +A
Sbjct: 510 LSRLIFALGIRHVGEHTAKLLAGAFGSMENLAAASEEEL----------TSIREVGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +I +F+++  N+  +  L +    +    EK V      K  VFTG L+K  R +A++ 
Sbjct: 560 ASIADFFKSEENLEVLRELKEH-GVNPKAEEKRVGGRFTGKTFVFTGALEKFTRDEAKKM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   G   +  +S+KTD ++ G + GSKLEKAQQLGV++++E+ FL L++
Sbjct: 619 VELEGGHAAGSVSKKTDYVVAGADAGSKLEKAQQLGVRVLSEDDFLELMR 668


>gi|209695779|ref|YP_002263709.1| NAD-dependent DNA ligase LigA [Aliivibrio salmonicida LFI1238]
 gi|254781250|sp|B6EJQ6|DNLJ_ALISL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|208009732|emb|CAQ80037.1| NAD-dependent DNA ligase [Aliivibrio salmonicida LFI1238]
          Length = 669

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/713 (35%), Positives = 397/713 (55%), Gaps = 50/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SIE   K L  L+++++YH   YY    P + D+EYD + ++   I    P+       
Sbjct: 1   MSIE---KTLDELKKQLNYHAYRYYVEDSPELPDAEYDRMMQQLLLIEKEHPEFMTV--- 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      +V H IP LSL+  +N  +L  F  RI        D+   F  E
Sbjct: 55  DSPSQRVGGEALGGFTQVQHEIPMLSLDNAFNDNELDSFEKRINDRL--ISDSVSLFCCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  +++ Y  G  V A  RGDG +GE+++  +R I  IP  L     P  +EVRGE
Sbjct: 113 PKLDGLAVSLLYVDGLLVQAGTRGDGATGENITENVRTIRCIPLTLQGEGWPTRLEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++ K  F ALN+  +    KP+ANPRNAA+G LR+L+     TR L+F+ + +G     
Sbjct: 173 VFMPKAGFDALNERALKRAEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGIIEGG 232

Query: 250 FAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +   Y+   +++  G P+    +Q ++   + +YY ++   R  L Y+IDG+V KVD 
Sbjct: 233 ELEGSHYQRFVQLKNWGLPMCEETKQCHSLTDVKAYYKDILERRDALKYEIDGVVIKVDS 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  +
Sbjct: 293 ISLQEQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPIFVGGVTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            + +GD V+++RAG+VIP++V ++   R  D++  
Sbjct: 353 SNATLHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPEDSKAI 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P+ CP C S++ R             RC  GL C AQ+ E LKHFVSR A +++GLG 
Sbjct: 402 IYPTTCPACDSQLERIEGE------VVTRCVAGLVCPAQRKEALKHFVSRKALDVDGLGD 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L     T   ++      G  S  N+ +++NK +  
Sbjct: 456 KVVEQLVDKEM----VETPADLFKLSAGVLTVLDRM------GPKSAQNVVNALNKAKET 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA ++ +            A ++  +  LI V  VGDI+
Sbjct: 506 TLSRFLYSLGIREVGEATAANLALHFQTLN----------AISSATFEQLIEVSDVGDIV 555

Query: 609 AQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I+ F+  P N   +E L       P I   +++V   + +K +V TGTL K++R++A
Sbjct: 556 AKHILGFFSEPHNQAVIENLQLMGVNWPDIKALDESVPQPLADKVVVLTGTLYKLKRNEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +LGA V+  +S+ TDI+  G+  GSKL KA++LGV+IMNEEQ + +L 
Sbjct: 616 KAALQELGAKVAGSVSKNTDILFAGEAAGSKLAKAEELGVEIMNEEQLIEILN 668


>gi|196045221|ref|ZP_03112453.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108]
 gi|196023805|gb|EDX62480.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108]
          Length = 669

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L  + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLAVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|166215832|sp|Q5ZWX6|DNLJ_LEGPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 673

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/713 (34%), Positives = 385/713 (53%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 1   MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H  P LSL  ++  ++L+ FI R      +  +  + F  E
Sbjct: 58  DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P  L + N P++IEVRGE
Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G   + 
Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 236

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 357 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L          + N+   G+ S  NL  ++ K +  
Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   ++                  L+ +  +G + 
Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKAAT----------IEELMTLNDIGPVA 559

Query: 609 AQAIVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  IV F+    N+  ++    L    P   + + N  +    K +V TGTL  + R +A
Sbjct: 560 ASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL  + 
Sbjct: 620 KAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFLKWVN 672


>gi|172036733|ref|YP_001803234.1| DNA ligase [Cyanothece sp. ATCC 51142]
 gi|254781304|sp|B1WZL6|DNLJ_CYAA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171698187|gb|ACB51168.1| DNA ligase [Cyanothece sp. ATCC 51142]
          Length = 676

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/711 (32%), Positives = 376/711 (52%), Gaps = 49/711 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++ ++ L Q++   +  YY    PI+ D+ YD L R  D++    P L     P+ P 
Sbjct: 6   EIKQRVTQLRQQLQKANYAYYVLDDPIMEDAVYDQLYRELDSLEKEHPQLI---TPDSPT 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +       VTH+IP  SLE  +N+E+L+ +  R  R ++K++  S+ +  E KID
Sbjct: 63  QRVGDQPASQFVSVTHNIPLYSLENAFNLEELKAWEKRWQRSYEKEEFTSVEYVCELKID 122

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           G+ + + YE G FV    RGDG +GE+++  +R I +IP  L++ N P I+EVRGE ++ 
Sbjct: 123 GSALALTYENGLFVRGVTRGDGTTGEEITQNVRTIRSIPLKLNIDNPPPIVEVRGEAFLP 182

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
            ++F  +N E    G   +ANPRNAA+G LR+L+P  +  R L FF + L    E     
Sbjct: 183 LDEFDRINQEREEKGDALFANPRNAAAGTLRQLDPKIVDQRRLQFFAYTL-HLEEAEISS 241

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+E L  +   GF VN   +       + +Y+ + ++ R  LPY  DG+V K++ +SLQK
Sbjct: 242 QWESLNYLENSGFLVNPHRKLCQFLDEVEAYFKQWETARKDLPYMTDGVVVKINNYSLQK 301

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   + PRW I+ K+  ++A T + +I + +GRTG +TP+A +EPV++ G  +  ATL
Sbjct: 302 ALGFTQKFPRWAIALKYPAEEAPTLVKNIVVNVGRTGAVTPMAVMEPVHLAGTTVQKATL 361

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L           DIRVGD V++++AGE+IP+VV ++   R P+ QP+  P  
Sbjct: 362 HNSDRIAQL-----------DIRVGDTVIIRKAGEIIPEVVRVLKELRPPNTQPYEMPDR 410

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S ++R          A  RC   L+C A     L H+ SRDA +I GLG++ +  
Sbjct: 411 CPECDSPLIRPSGE------AVIRCMN-LSCEAILRGSLVHWASRDALDIRGLGEKIVVL 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++      +   AD++ L          I N+   G  S  NL  +I   +     R 
Sbjct: 464 LIEN----GLVNSIADLYYLTP------ETIANLERMGSKSADNLIKAIEGSKQQPFSRV 513

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LGIR+VG+  A  L + + S    +Q            + SL  V  VG+ IAQ+I+
Sbjct: 514 LYGLGIRYVGSVTANLLVENFPSIDQLSQA----------SFASLSSVYGVGEEIAQSII 563

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRHKAQE 668
           +++   +N   ++ L K          + ++     +    K  V TGTL  + R++A+ 
Sbjct: 564 DWFSIEKNCDLIKQLKKVGLQLETTSSEQITVEPSLTPFSGKTFVITGTLPTLTRNEAKA 623

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + Q G  V+  +S+KTD ++VG+  GSKL +A++LG+  ++E   L LL 
Sbjct: 624 LIEQAGGKVTGSVSKKTDYLLVGEKAGSKLTQAEKLGINQLSEADLLRLLN 674


>gi|229131294|ref|ZP_04260196.1| DNA ligase [Bacillus cereus BDRD-ST196]
 gi|228652180|gb|EEL08115.1| DNA ligase [Bacillus cereus BDRD-ST196]
          Length = 669

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 IQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  D + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGDEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLELER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELK----------TINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|83951899|ref|ZP_00960631.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM]
 gi|83836905|gb|EAP76202.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM]
          Length = 748

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/758 (40%), Positives = 438/758 (57%), Gaps = 59/758 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +   +E L+ + AR EL+ L   +   +  Y+    P I D+EYDALK+R   I   FP+
Sbjct: 3   ETTAVERLTEDAARAELARLADLLQRANAAYHGADAPEISDAEYDALKQRNAEIEARFPE 62

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R    + P  ++G   +    KV H I  LSL   +   D+  F  RI ++       
Sbjct: 63  LKRD---DSPSEQVGAAPSEGFGKVAHEIRMLSLGNAFADGDVADFDERIRKYLGLGSGA 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           ++ +T EPKIDG  +++RYE+GK V AA RGDG  GE+V+A  R +  IP+ +S   PE+
Sbjct: 120 ALAYTAEPKIDGLSLSLRYEQGKLVQAATRGDGAVGENVTANARTVEDIPQEIS-GAPEV 178

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+S  DF ALN    A G KP+ANPRNAA+G LR+L+P     R L FF +  
Sbjct: 179 LEVRGEVYMSHADFEALNARQEAAGAKPFANPRNAAAGSLRQLDPGVTAARPLKFFAYAW 238

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G  S   A+ Q   + ++  LGFPVN   R+  +   ++++Y E++  R+TL YDIDG+V
Sbjct: 239 GALSAPLAETQMGAIARLGALGFPVNPLTRRCESVGEMIAHYREIEQGRATLGYDIDGVV 298

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +
Sbjct: 299 YKVDDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLAPVTV 358

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++NATLHNEDYI G DA G  +RGG+DIRVGD V V RAG+VIPK+ D+ + +R  
Sbjct: 359 GGVVVSNATLHNEDYIAGRDAKGGEIRGGKDIRVGDWVQVYRAGDVIPKIADVDLAKRPE 418

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            A+ F FP+ CP C S  +R+      +  A  RC+GGL C AQ +E+LKHFVSR AF+I
Sbjct: 419 GAERFDFPTRCPECGSEAIRE------EGDAVRRCSGGLICPAQAVEKLKHFVSRAAFDI 472

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG +Q++ F++       I+ PADIFTLQ R      +++N  G+G+ S  NL+ +I 
Sbjct: 473 EGLGAKQVEQFYRD----GWIKAPADIFTLQERYGAGLQQLKNREGWGEKSANNLFAAIE 528

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------ 585
           ++R I L + IF+LGIRH G   AR LA +Y  +Q  A+ I+                  
Sbjct: 529 EKRRIPLAKLIFALGIRHAGEVAARDLALHYRDWQAMAEAIDLARPAARAHRAADEAEEA 588

Query: 586 ---------------NIIAHNNDD----------WLSLIRVPLVGDIIAQAIVEFYQNPR 620
                             A    D          W  LI V  +G ++  ++ + + N +
Sbjct: 589 ERQAAGAEGRRARVSETRAAAVADCDVPAEAAAAWADLIAVDGIGAVLGLSLSDAFANDQ 648

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
              A++ L+  +   +        S +  K +VFTG+L+K+ R +A+     LGA VS  
Sbjct: 649 ERAAIDTLVAGLDI-VAPDAPAADSPVAGKTVVFTGSLEKMTRAEAKARAESLGAKVSGS 707

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S KTDI++ G   GSK  KA +LG++ ++E+ +L L+
Sbjct: 708 VSAKTDILVAGPGAGSKATKAAELGIETLDEDGWLALI 745


>gi|294340191|emb|CAZ88563.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Thiomonas sp.
           3As]
          Length = 686

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/718 (34%), Positives = 379/718 (52%), Gaps = 52/718 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            Q  +  + L  EI+  D  YY    P+  D++YDAL R    I    P+L     P+ P
Sbjct: 8   AQPAERATQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPEL---RTPDSP 64

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKK-DDNSIFFTLE 131
             ++GG        V H++P LS++   +   E    F  R+        DD  + +  E
Sbjct: 65  TQRVGGAPLPEFAPVRHAVPMLSIQTETDTTPEGAAAFDQRVRNRLGLSADDPPVNYCAE 124

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++RYE G+ V AA RGDG +GEDV+  +R I ++P  L  N P ++EVRGEV
Sbjct: 125 LKFDGLAISLRYEHGQLVQAATRGDGETGEDVTQNVRTIRSVPLQLRGNAPAVLEVRGEV 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            + + DF   N      G     NPRN A+G +R+L+P     R L F+ +G G+ +   
Sbjct: 185 LMKRADFERYNARQRDKGLPTLVNPRNGAAGSIRQLDPAIAAQRPLAFYAYGWGEIAGWA 244

Query: 251 --AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 + ML  +   G PV            ++ ++  + + R +LP+DIDG+VYKVD 
Sbjct: 245 QQPDTHHAMLDALETFGLPVAPQRVHGPGAQTLIDFHARIAAARDSLPFDIDGVVYKVDS 304

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG R R P W ++HK+  ++ ST+++ IDIQ+GRTG LTPVA+LEPV +GG  +
Sbjct: 305 LALQRELGFRNREPVWAVAHKYPAQERSTKVIGIDIQVGRTGKLTPVAKLEPVFVGGVTV 364

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQP 427
           TNATLHNED ++            +D+RVGD V+V+RAG+VIP+VV ++++ R  D  +P
Sbjct: 365 TNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEVVSVVLSARPADVGEP 413

Query: 428 FSFPS----FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           F         CP+C S +VR+         A  RCTGGL C+AQ+ + + H+ SR A +I
Sbjct: 414 FDLYQRLGGQCPVCGSAIVREAGE------ADWRCTGGLFCAAQRKQAILHYASRRAMDI 467

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++ +D        A  +R+  D++ L         K+  +    + S  NL  ++ 
Sbjct: 468 EGLGEKLVDQLVD----AGIVRVLPDLYRL------GLLKLAALDRMAEKSAANLLQALQ 517

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIRHVG   A+ LA+++                       L+ VP 
Sbjct: 518 ASKTTTLARFLYALGIRHVGEATAKDLARHFGGLDAILDA----------PLEQLLEVPD 567

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           VG ++AQ+I  F+  P N   VE L    V  S    +++    +  K LV TGTL  + 
Sbjct: 568 VGPVVAQSIRTFFDQPHNREVVEQLRACGVHWSEAAPDRDAPKPLAGKTLVLTGTLPTLS 627

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R +A+  +   G  V   +S+KTD ++ G   GSKL KAQ+LGV +++E + L LL  
Sbjct: 628 REEAKARIEAAGGKVVGSVSKKTDYVVAGAEAGSKLAKAQELGVTVLDEAELLKLLAD 685


>gi|117618613|ref|YP_855770.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166215386|sp|A0KHL9|DNLJ_AERHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117560020|gb|ABK36968.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 668

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/709 (34%), Positives = 388/709 (54%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +         L + +  +   YY    P + D+EYD L R    +    P+L   + P  
Sbjct: 1   MSDILSRHRQLCELLIEYGHQYYVLDNPTVPDAEYDRLMRELIVLEAEHPEL---KTPAS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+   +  +V H IP LSL+ +++ E+L+ F  R+    +++   S  F  EPK
Sbjct: 58  PSVRVGGQPLTAFKQVRHEIPMLSLDNVFSGEELQAFEQRMRDRLKREV--SFTFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ Y  G+ V AA RGDG +GE+++  +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYVAGQLVQAATRGDGTTGEEITENVRTIKAIPLSLRGEGWPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + K  F A+N + +A G K + NPRNAA+G LR+L+     +R L F+ +G+G   E   
Sbjct: 176 MPKAGFEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLAFYAYGVGVGGEQLG 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +  L +++  G P++  V+      G  ++++++ + R  LPY+IDG+VYKVD   L
Sbjct: 236 GSHFGRLNQLKEWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPL 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW  +HKF  ++  T L +++ Q+GRTG +TPVA+L+PV +GG  ++NA
Sbjct: 296 QEELGFVARAPRWATAHKFPAQEEMTELENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + +GD V+V+RAG+VIP++V ++  +R  DA+   FP
Sbjct: 356 TLHNADEIERL-----------GVMIGDTVIVRRAGDVIPQIVAVVEAQRPADARAILFP 404

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RC+GGL C AQ+ E +KHF +R A +++GLG + +
Sbjct: 405 TECPVCGSAVERLEGE------AVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIV 458

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           ++ PAD+F+L   Q     ++         S  NL  +I+  R+ +L 
Sbjct: 459 EQLVDK----GLVKTPADLFSLNAIQLAGLERMGQ------KSALNLVAAIDAARSTTLP 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+F+LGIR VG   A +LA ++L+            A        L+ V  VGDI+A+ 
Sbjct: 509 RFLFALGIREVGEATALNLANHFLTLD----------ALRAASVEQLLEVADVGDIVAKH 558

Query: 612 IVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +  F + P NI  +EA L   +       ++        K  V TGTL  + R+ A+  +
Sbjct: 559 VYYFLRQPHNIEVLEALLAAGIHWPAIEKKEASEQPFAGKTFVLTGTLTTLSRNDAKAAL 618

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             LGA V+  +S KTD+++ G+  GSKL KAQ+LG+ + +EE+    LQ
Sbjct: 619 QALGAKVAGSVSAKTDVLVAGEAAGSKLVKAQELGITVWSEEELQQALQ 667


>gi|51893963|ref|YP_076654.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863]
 gi|81388077|sp|Q67KI8|DNLJ_SYMTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51857652|dbj|BAD41810.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863]
          Length = 673

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/705 (34%), Positives = 377/705 (53%), Gaps = 47/705 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L + I +H+  YY  ++P I D+ +D L +    +  AFPDL R   P+ P  
Sbjct: 6   AERRIPELIETIRHHEYLYYVKNEPEISDAAFDELMQELKQLEEAFPDLRR---PDSPTQ 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG       KV H  P  SL+  ++  DLR F  R+           + +  E KIDG
Sbjct: 63  RVGGATAPDFAKVPHQPPMYSLDNAFSEADLRDFDRRVREGLG---GEPVSYVCELKIDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYI 193
             I++RYE G FV  A RGDG +GEDV+  +R I +IP  L      +P  + VRGEVY+
Sbjct: 120 LSISLRYEDGLFVQGATRGDGETGEDVTENLRTIGSIPLRLDGTEAPVPPRLIVRGEVYM 179

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
           +K     LN  + A G+    NPRNAA+G LR+ +P     R L+ F++ +     +   
Sbjct: 180 TKQVLEELNAALAAEGKPLLQNPRNAAAGGLRQKDPRKTRERRLDAFLYQVVDAEALGIA 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +  LQ+++   F VN     A+T   ++ +    ++ R  LPY+IDGLV KV++ + Q
Sbjct: 240 DHWSALQRLQAWRFKVNPHRHLAHTIDEVLDWVAGWQARRHELPYEIDGLVIKVNDLAQQ 299

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  ++ PRW I++KF  ++  T ++ I +++GRTG++TP A L PV I G  +  AT
Sbjct: 300 RRLGFTSKFPRWAIAYKFPAEERETTVVGISLEVGRTGVVTPSADLAPVRIAGTTVKRAT 359

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNEDYI+            +DIRVGD V+V++AGE+IP+VV ++  +R PDAQP++FP 
Sbjct: 360 LHNEDYIR-----------EKDIRVGDTVIVRKAGEIIPEVVRVVPEKRPPDAQPWTFPK 408

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +VR          AA RCT  L C AQQ   + HF SRDA NIEGLG+  + 
Sbjct: 409 TCPACGAELVRIEGE------AATRCTNNL-CPAQQYRAILHFASRDAMNIEGLGEALVQ 461

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      I   AD++ L  ++      +  +   G+ SV NL  +I+  R   L R
Sbjct: 462 SLLDH----GLIEDAADLYRLHEKRDA----LIRLERMGEKSVDNLLAAIDATRQNPLHR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIRHVG   AR LA ++ S +   Q   + +            +P +G  IA+++
Sbjct: 514 LIFALGIRHVGERAARLLADHFGSMEAIEQAGLDELTA----------IPGLGPKIAESV 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             ++ +PR+   +  L       +G  +       +    +V TGTL +  R + +E + 
Sbjct: 564 KNYFASPRSHQLLAKLRAAGVNMVGEKKAGPAEGPLAGMTVVVTGTLVRWSRKEIEELIQ 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           QLG   +  +SRKT  ++ G+  GSKL+KAQ+LG+ ++ E++F  
Sbjct: 624 QLGGKAAGSVSRKTSFVVAGEAAGSKLQKAQELGIPVLTEDEFCE 668


>gi|114327083|ref|YP_744240.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1]
 gi|122327935|sp|Q0BV35|DNLJ_GRABC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114315257|gb|ABI61317.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1]
          Length = 700

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/717 (39%), Positives = 424/717 (59%), Gaps = 34/717 (4%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
            L P EALS  +AR EL  L   I+  DD YY+   P++ D++YDAL++R   I   FPD
Sbjct: 10  SLTPPEALSPAEARAELERLASRIAELDDAYYRDDAPLVTDADYDALRQRNAEIERLFPD 69

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
                  N P N++G   + +  K+ H +P LSL+ +++ E+  +F  R  RF       
Sbjct: 70  AILK---NSPANRVGTAPSSAFAKIRHRVPMLSLDNVFDTEEFAEFCARARRFLNLPA-- 124

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           S  F  EPKIDG  I++ YE G    AA RGDG  GEDV+A +R +  +P+ L    P  
Sbjct: 125 SPRFVAEPKIDGLSISLTYENGILTRAATRGDGMEGEDVTANVRTLRDVPQTLHGEAPAF 184

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           IE+RGEV++SK  FL LN+    +G+K +ANPRNAA+G LR+L+ +    R L  F +  
Sbjct: 185 IEIRGEVFMSKAAFLELNETQARLGQKIFANPRNAAAGSLRQLDASVTANRPLALFAYAQ 244

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G++S   A+  ++ L +++  GF VN   +     +   ++   + + RSTLPYDIDG+V
Sbjct: 245 GESSAPVAETHWDYLTRLKDWGFVVNPLSQLIEDENAAAAFTTRIAAGRSTLPYDIDGVV 304

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           +K+D+ SLQ++LG   R+PRW  + KF  +QA+T L  IDIQ+GRTG LTPVA L+ VN+
Sbjct: 305 FKIDDLSLQRRLGFVGRAPRWATAWKFPAEQATTVLEKIDIQVGRTGALTPVAHLQAVNV 364

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG L+T ATLHNED I             +D+R GD V+++RAG+VIP++V +++ +R  
Sbjct: 365 GGVLVTRATLHNEDEIAR-----------KDVREGDTVILQRAGDVIPQIVSVVLEKRPD 413

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            A+PF+    CP+C S  +R             RCTGGL C AQ +ERL H VSR AF+I
Sbjct: 414 GARPFAPLEHCPVCGSLAIRPPGE------VVRRCTGGLTCEAQVVERLIHMVSRPAFDI 467

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG++ +  F +       +  PADIF L  R+     +I    G+G +S  NL  +I 
Sbjct: 468 DGLGEKSILEFHRD----GLVSGPADIFRLPARE----DEIARRDGWGSLSARNLSQAIE 519

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            RR+I  +RF+++LGIR +G   AR LA++Y S+  +  ++       +D+ L+L  +  
Sbjct: 520 ARRSIPFDRFLYALGIRRIGETNARLLARHYGSFTEWRTQMLAARQIGSDERLALGSITG 579

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +G  IA+ +V+F+  PRNI  ++ L   +   +PS G     + S +  K +VFTGTLQ 
Sbjct: 580 IGPTIAEELVDFFAEPRNIDTLDELAGMLTITAPSGGLSSAALDSPLNGKIIVFTGTLQA 639

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + R +A+     +GA V+  +S+KTD ++ G + GSK +KA +LG++ ++EE++L L
Sbjct: 640 MTRPEAKARAESMGAKVTDSVSKKTDFVVTGADAGSKAKKAAELGIRTLSEEEWLAL 696


>gi|229171138|ref|ZP_04298732.1| DNA ligase [Bacillus cereus MM3]
 gi|228612316|gb|EEK69544.1| DNA ligase [Bacillus cereus MM3]
          Length = 669

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGMVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LE V + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEAVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|322418721|ref|YP_004197944.1| NAD-dependent DNA ligase [Geobacter sp. M18]
 gi|320125108|gb|ADW12668.1| DNA ligase, NAD-dependent [Geobacter sp. M18]
          Length = 668

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/710 (36%), Positives = 384/710 (54%), Gaps = 44/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A + ++ L +EI  H+  YY+   P I D+EYDAL R    +   FP+LA    P
Sbjct: 1   MEAQAAAERIAWLSKEIERHNRLYYEQDMPEITDAEYDALFRELQELEKKFPELAL---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +V HS P LSLE  ++ +D+  F  R+ RF     D  I +  E
Sbjct: 58  DSPTGRVGGRPLAKFTQVRHSTPMLSLENAFSEQDMVDFDDRVKRFLGLAADAQISYICE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  + + Y  G     + RGDG  GE+V+  ++ I  +P  L +   PE++ VRGE
Sbjct: 118 PKMDGVAVELVYRDGLLAIGSTRGDGVVGEEVTQNLKTIKDVPLRLETREPPELVTVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    F   N E    G  P+ANPRNAA+G LR+L+      R L+ F +  G+ + +
Sbjct: 178 VYLPLAPFRKFNREREEAGEPPFANPRNAAAGSLRQLDSRITAKRPLSIFCYAPGELAGV 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q   L+ +     PVN   R       +++YY EM   R  LPY+IDG+V KVD F
Sbjct: 238 EFTSQSHFLETIPKWRLPVNPLTRVVTGIQAMLAYYQEMMEKRDDLPYEIDGVVVKVDSF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            +Q++LGE++RSPRW  + KF  +QA+T +  I   +GRTG++TPVA L+PV++ G +++
Sbjct: 298 RMQRELGEKSRSPRWATAWKFPPRQATTVVEKIFHSVGRTGVITPVAFLKPVSVSGVMVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR GD V+V+RAG+VIP VV  ++++R   A    
Sbjct: 358 RATLHNWEELER-----------KDIREGDTVVVERAGDVIPAVVQALLDKRPEGAVKPE 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C   VVR  +        A RC G LAC AQ LER+KHF SR A +IEGLG +
Sbjct: 407 IPTSCPVCGGEVVRLPDE------VAVRCVG-LACPAQLLERVKHFASRRAMDIEGLGDK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     +     I   ADI+ L+                G     NL ++I   +   
Sbjct: 460 FIEQLLSLK----LISDVADIYALKE------ADFMQFERMGKKLAENLLNAIEASKERD 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R IF+LG+RHVG   A+ LA  + S +N A+     +            +  VG  +A
Sbjct: 510 LSRLIFALGMRHVGEHTAKLLAGAFGSIENLAKASEEEL----------TSIREVGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +IV+F++N  N+  +E L KE   S    EK +      K  VFTG L+K  R  A++ 
Sbjct: 560 ASIVDFFKNEENLRVIERL-KEAGVSPKVEEKRLGGRFTGKTFVFTGALEKFTRDGAKKM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V Q GA  +  +S+KTD ++ G + GSKLEKA+QLGV+++ EE+FL L+Q
Sbjct: 619 VEQEGAHAAGSVSKKTDYVVAGADAGSKLEKARQLGVRVLTEEEFLELMQ 668


>gi|241764431|ref|ZP_04762455.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
 gi|241366173|gb|EER60750.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
          Length = 697

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/730 (35%), Positives = 384/730 (52%), Gaps = 61/730 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+ QA     +L   ++     YY   +P + D+EYD++ R   A+  A PDL     P+
Sbjct: 11  SLAQAA---DALRARLNLWAHQYYVMDEPTVPDAEYDSVFRELQALETAHPDLI---TPD 64

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKD-DNSIFFT 129
            P  ++ G +   L  V H +P LS+    + E    + F  R+         D  + + 
Sbjct: 65  SPTQRVIGAVMDGLPPVRHVVPMLSIHTETDTEATGAQAFDARVRHELGLAPSDPPVEYV 124

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--------NI 181
            EPK DG  +++RYE G+ V AA RGDG  GEDV+  IR I  IP VL          N+
Sbjct: 125 AEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLVLPFDTPVSGGNNV 184

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240
           P ++EVRGEVY+ + DF ALN+     G K + NPRNAA+G +R+L+      R L+FF 
Sbjct: 185 PPLLEVRGEVYMRRADFDALNERQREHGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFA 244

Query: 241 HGLGKT-----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           +GLG            +  YE+LQ ++  GFPV   V+       +V+Y+  + + R  L
Sbjct: 245 YGLGAITPVGEGGPAFRTHYEVLQTLKSWGFPVAAQVQITQGATELVAYHQRVGASRDAL 304

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           PYDIDG+VYKV+   LQ+ LG + R PRW ++HK+  ++ +T++  ID+Q+GRTG +TPV
Sbjct: 305 PYDIDGVVYKVNSLLLQRDLGFKTREPRWAVAHKYPAQEMATKIEGIDVQVGRTGKITPV 364

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           ARL PV +GG  +TNATLHN   I+            + +RVGD V+V+RAG+VIP+VV 
Sbjct: 365 ARLAPVFVGGVTVTNATLHNLFEIRK-----------KGVRVGDTVIVRRAGDVIPEVVG 413

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           ++   R      F  P+ CP+C S VVR+         A HRCTGGL C+AQ+ E + HF
Sbjct: 414 VMPGNRVGYVPNFRMPNACPVCGSDVVREKGE------ANHRCTGGLFCAAQRKEAILHF 467

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            +R A +IEGLG + +D    +      IR   D++ L        T +  +    + S 
Sbjct: 468 AARRAMDIEGLGDKLVDQLVDAN----VIRTLPDLYRL------GLTSLIALERMAEKSA 517

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            N+  ++ K +  +L RF+F+LGIRHVG   A+ LA+++                     
Sbjct: 518 QNVLAALEKSKQTTLPRFLFALGIRHVGEATAKDLARHFGVLDAIMDATEE--------- 568

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVF 654
             L+ V  VG ++A+AI  F+  P N   VE L    V+   G   +     +    +V 
Sbjct: 569 -QLLAVNDVGPVVAKAIHTFFGQPHNREVVEQLRACGVTWPEGAPAERAPQVLAGMTVVL 627

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL  + R  A++ +   GA V+  +S+KT  ++ G+  GSKL +AQ+LGV +++E   
Sbjct: 628 TGTLPTLSRDAAKDLLEAAGAKVAGSVSKKTHYVVAGEEAGSKLARAQELGVPVLDEAGM 687

Query: 715 LFLLQQYNTT 724
           L LL      
Sbjct: 688 LALLATGPGA 697


>gi|299535244|ref|ZP_07048568.1| DNA ligase [Lysinibacillus fusiformis ZC1]
 gi|298729365|gb|EFI69916.1| DNA ligase [Lysinibacillus fusiformis ZC1]
          Length = 667

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/715 (33%), Positives = 386/715 (53%), Gaps = 56/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  + ++ L + +  +   YY   KP++ DS YD L +   A+  A P L     P+ 
Sbjct: 1   MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLQELIALEEANPSLIY---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KVTH  P LSL   +N  DLR+F  ++ +       +   +  E K
Sbjct: 58  PTQRVGGAVVEGFKKVTHDYPMLSLSNAFNEADLREFDRKVRQAIG----DQFSYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+++YE G FV  A RGDG  GED++A ++ I  IP  L    P  IEVRGE Y+
Sbjct: 114 IDGLAISLKYENGMFVQGATRGDGVVGEDITANLKTIRAIPLRLKE--PITIEVRGEAYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FA 251
            K  F  LN +    G + +ANPRNAA+G LR+L+P     R L+ F++ +G   E+   
Sbjct: 172 PKKSFENLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G  EML  +  LGFP N   ++ +T   ++++       R  L Y+IDG+V KVD ++ 
Sbjct: 232 DGHAEMLDYLEGLGFPSNKERQRCSTIEEVMAFIEHWTENRPKLAYEIDGIVIKVDRYAQ 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  A+SPRW I++KF  ++  T LLDID+ +GRTG++TP A L PV + G  +  A
Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +DIR+GD V++++AG++IP+VV +++ +R  D+ PF  P
Sbjct: 352 SLHNEDLIRD-----------KDIRLGDTVIIRKAGDIIPQVVGVLIEQRPEDSVPFVMP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S ++R           A RC    AC AQ  E +K+FVSR+A NI+GLG + +
Sbjct: 401 KNCPVCDSELIRIEGE------VALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +    A  I   +D++ L   Q     ++      G+ S TNL ++I   +  S+E
Sbjct: 454 EQLLR----ADLIHDVSDLYHLTVEQLVELERM------GEKSATNLVNAIQASKENSME 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  LGIRHVG + A+ +++ + S +                   L+ +  +GD +A +
Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEEFGSMEAVMAATEE----------QLVAIYEIGDKMASS 553

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +VE++ N      +E L         +          S    K +V TG L+++ R++A+
Sbjct: 554 LVEYFSNEDARAVIERLADAGVNMTYKGKKVEVAIGDSPFAGKTIVLTGKLEQLTRNEAK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             + +LG  V+  +S+KTD++I G + GSKL KA+QLG+++  E+    L++Q N
Sbjct: 614 AKIEELGGTVTGSVSKKTDLVIAGADAGSKLTKAEQLGIEVWTED---NLIEQLN 665


>gi|295697355|ref|YP_003590593.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912]
 gi|295412957|gb|ADG07449.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912]
          Length = 677

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/717 (35%), Positives = 381/717 (53%), Gaps = 56/717 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A + +  L   I  +D  YY    P++ D+EYD   R    +    P+L     P+ P 
Sbjct: 6   DAARRIEELRALIRRYDYHYYVLDDPLVDDAEYDRCMRELVELEARHPELV---TPDSPT 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++ G  + +  KV H  P LSL   ++  D+R+F  R+           + +  E KID
Sbjct: 63  QRVSGAPSEAFAKVIHREPMLSLANAFSEGDVREFDRRVRAALP---GEDVEYVCELKID 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++RYE G+FV  A RGDG  GED++  +R I  +P  L   +   +EVRGE Y+ K
Sbjct: 120 GLAISLRYENGEFVQGATRGDGELGEDITRNLRTIRVLPLRLPERV--SVEVRGEAYMPK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI----- 249
             FL +N E    G + +ANPRNAA+G LR+L+P    R  L+ +++      +      
Sbjct: 178 KVFLRVNRERDEAGEQAFANPRNAAAGSLRQLDPRVTARRGLSLWMYAAVLGPDGTVPGG 237

Query: 250 --FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +   E+L+ +  LGFPVN   R       +  + NE   +R+TLPYDIDG+V KV+
Sbjct: 238 PGPFRTHEEILKWLDTLGFPVNPHRRVCRNLEEVFQFLNEGDRLRNTLPYDIDGMVIKVN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q +LG  A+SPRW +++KFA +QA TRLL I++ +GRTG++TP A  EPV + G  
Sbjct: 298 NLDQQNRLGATAKSPRWAMAYKFAPEQAETRLLTIEVSVGRTGVVTPTAVFEPVFLAGTT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LHNED I+            RDIR+GD V+V++AGE+IP+VV +  + R  +   
Sbjct: 358 VSRASLHNEDLIR-----------ERDIRIGDIVVVEKAGEIIPEVVRVRADLRTGEEHI 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           FS P  CP C S +VR           A RC     C AQ  E + HF SRDA NIEGLG
Sbjct: 407 FSMPKDCPACGSPLVRLEEE------VALRCVNP-DCPAQIQEGIIHFASRDAMNIEGLG 459

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +  +   ++       I   AD++ L+R Q     ++         S  NL  +I + + 
Sbjct: 460 EALVAQLYRE----GLIHSVADLYELKREQLVPLERMGA------KSADNLLQAIERSKQ 509

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLER +F LGIR++G + +R LA ++       +  +  +          ++VP +G  
Sbjct: 510 NSLERLLFGLGIRYIGEKASRVLAAHFKEMDALMEASSEEL----------LKVPDIGAK 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +AQ+I  ++        +E L       +  G     V S +  K +V TGTL  + R +
Sbjct: 560 MAQSIRVYFGQESARRLIERLRAHGVNMVYRGAEAAPVPSRLAGKTVVLTGTLHAMGRRE 619

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           AQ++V +LG   +  +SRKTDI+I G++PGSKL KA+QLGV+++NE+QFL +L++  
Sbjct: 620 AQDWVRRLGGKPTESVSRKTDIVIAGEDPGSKLVKARQLGVEVINEDQFLSILREAG 676


>gi|126668324|ref|ZP_01739283.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
 gi|126627241|gb|EAZ97879.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
          Length = 703

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/736 (33%), Positives = 398/736 (54%), Gaps = 67/736 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R  +  L   I+ H+  YY    P + D+EYD L R   A+   +P+LA +     P  
Sbjct: 8   VRDRVHQLRTTITDHNHHYYVLDDPQVPDAEYDRLFRGLQALEAEYPELATA---TSPTQ 64

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK---------------- 120
           ++G  +  S  +V H IP LSL+  ++ +DLR F  R+     +                
Sbjct: 65  RVGSAVETSFAEVIHRIPMLSLDNAFSADDLRDFDRRVRERLNRGNTAGEDSIREDSTAE 124

Query: 121 --------KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172
                   K++ +I +  EPK+DG  +++ Y+ G+ V AA RGDG++GED++A IR I +
Sbjct: 125 EGSKEEDSKEERTIEYVCEPKLDGLAVSLHYQNGELVRAATRGDGYTGEDITANIRTIAS 184

Query: 173 IPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD 231
           +P  L   + P+ +EVRGEVY+ +  F  LN  +   G K + NPRNAA+G LR+   + 
Sbjct: 185 VPLTLRGGDFPQTVEVRGEVYMPRAGFDRLNQRLAGRGEKTFVNPRNAAAGSLRQKKSSV 244

Query: 232 ITR-YLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
             R  L    + +  T E       +E LQ++   GF +N  +  A      +  Y  + 
Sbjct: 245 TARRPLEMCAYSVAVTDESALPPTHWEGLQQVSEWGFRINPEMSLAIGADQCLEAYEALM 304

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
           + R +LPY+IDG+V+KV+   LQ+QLG  +R+PRW I+ KF  ++  T +  ++ Q+GRT
Sbjct: 305 AKRDSLPYEIDGIVFKVNRLDLQQQLGFVSRAPRWAIAQKFPAQEELTVVESVEFQVGRT 364

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVARL+PV +GG  ++NATLHN D ++ L           D+ +GD V ++RAG+V
Sbjct: 365 GAITPVARLKPVFVGGVTVSNATLHNMDEVRRL-----------DLHIGDTVFIRRAGDV 413

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IPKVV ++ N+R  DA     P+ CP C S VV+      G+++A  RC+GGL C AQ+ 
Sbjct: 414 IPKVVKVVQNKRPADAWVIELPAQCPACGSDVVQ----IEGEVIA--RCSGGLFCPAQRK 467

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
           E ++H+ SR A +IEGLG + +D    S+     +   AD++ L +   T   ++     
Sbjct: 468 EAIRHYASRKALDIEGLGDKWVDILVDSKK----VETIADLYRLCKADLTVLERM----- 518

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
            GD S +NL  +I+  R   L RF+++LGIR VG   A+ LA Y+ S +  A+   + + 
Sbjct: 519 -GDKSASNLIAAIDASRQPLLWRFLYALGIREVGEATAKGLAGYFGSLEAIAEADESALQ 577

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
                      V  VG I+A  +  F++ P N   ++ L +       +     S  +  
Sbjct: 578 A----------VSDVGPIVAGHLRSFFEQPHNQEILQNLTQAGVIWQTQEITAASMPLHG 627

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TGT++++ R +A++ +  LGA V+  +S+KT  ++ G+  GSKL KAQQLGV+++
Sbjct: 628 QTWVLTGTMEQMTRDQAKQKLEGLGAKVAGSVSKKTACVVAGEAAGSKLAKAQQLGVEVL 687

Query: 710 NEEQFLFLLQQYNTTL 725
           +E+  L LL+ ++  +
Sbjct: 688 SEQGLLDLLRGHDVEV 703


>gi|289165264|ref|YP_003455402.1| DNA ligase [Legionella longbeachae NSW150]
 gi|288858437|emb|CBJ12315.1| DNA ligase [Legionella longbeachae NSW150]
          Length = 671

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/712 (35%), Positives = 390/712 (54%), Gaps = 46/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I++ +++ + L+ +I  +D  YY   +P++ D EYD   R    +    P+L  +   
Sbjct: 1   MIIDEIKEQAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    +   VTH  P LSL  +++ E+L+ F+ R+     +     + FT E
Sbjct: 58  DSPTQRVGGTPADAFAPVTHRQPMLSLSNVFSEEELQAFVKRVTEKLDEPA-QQLVFTCE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGE 190
           PK+DG  + I YE G  VYAA RGDG +GE+++A I+ I  IP VL  N P    E+RGE
Sbjct: 117 PKLDGLAVNITYENGVLVYAATRGDGTTGENITANIKTIAAIPLVLRSNKPPRFIEIRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           VY+ K+ F   N +   +G K +ANPRNAA+G LR+LNP     R L  + +G+G   + 
Sbjct: 177 VYMPKSGFEQYNKKAKELGEKTFANPRNAAAGSLRQLNPAVTANRPLAIYCYGIGACEDY 236

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E LQ ++ LGF V++  ++     G + YY  M + R  LP++IDG+VYKVD 
Sbjct: 237 RLPNTHWEQLQLLKELGFKVSSESKREVGIKGCLDYYCNMLARRDQLPFEIDGVVYKVDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  +R+PR+  +HKF   +  T +L +D Q+GRTG LTPVARL PVN+ G  +
Sbjct: 297 IALQQQLGFISRAPRFACAHKFPATEEITEILAVDFQVGRTGALTPVARLAPVNVAGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD+V+++RAG+VIP+VV +++ +R  D +  
Sbjct: 357 SNATLHNMDEITR-----------KDIRIGDKVIIRRAGDVIPEVVSVVLEQRPADTKEI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+         A  RC GGL C AQ    + HF SR A +IEGLG 
Sbjct: 406 CLPLKCPVCDSDVVREEGE------AVARCIGGLFCKAQLKRMMWHFASRKAMHIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++           +R   D++ L            N+   G+ S  NL  ++   +  
Sbjct: 460 VLIEQLVDE----GIVRHLPDLYRLDVSTLA------NLPRMGEKSAKNLLQALEHSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF+++LGIR +G   AR LA+++   +          A +N     L+ +  +G + 
Sbjct: 510 TLSRFLYALGIREIGEASARVLAEHFGDIE----------AISNATEADLMSLEDMGPVG 559

Query: 609 AQAIVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  IV F+    N+  ++    L    P I + ++N    +  K +V TGTL  + R +A
Sbjct: 560 AANIVHFFAQTHNLQVIQHLLELGIHWPKIEKKQQNKEHPLFGKTVVLTGTLNTLSREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA VS  +S KTD +I G   G+KL+KA  LG+ I++EEQFL +L
Sbjct: 620 KAKLLILGAKVSGSVSAKTDYVIAGIEAGTKLDKANNLGISILDEEQFLHML 671


>gi|229188563|ref|ZP_04315602.1| DNA ligase [Bacillus cereus ATCC 10876]
 gi|228594752|gb|EEK52532.1| DNA ligase [Bacillus cereus ATCC 10876]
          Length = 669

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 385/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ISSHGESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKA----------INEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|237747723|ref|ZP_04578203.1| DNA ligase [Oxalobacter formigenes OXCC13]
 gi|229379085|gb|EEO29176.1| DNA ligase [Oxalobacter formigenes OXCC13]
          Length = 685

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/713 (37%), Positives = 398/713 (55%), Gaps = 49/713 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            ++ + L  EI  ++  YY    PI+ DSEYD L R+   +  A P+L     P+ P  +
Sbjct: 16  AEQAARLRSEIERYNIAYYVLDAPIVPDSEYDRLFRQLQELEKAHPELVV---PDSPTQR 72

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG       KV H IP LSL+   + E++  F  RI       D  ++ +  E K DG 
Sbjct: 73  VGGLPLAQFEKVEHKIPMLSLQNGLSEEEVAAFDKRISDEL---DGENVEYEAELKFDGL 129

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKN 196
            + +RYE G  V AA RGDG SGE+++  I+ + TIP  LS L  PE++EVRGEV + K 
Sbjct: 130 AVNLRYENGLLVQAATRGDGTSGENITNNIKTVRTIPLRLSDLAPPEVLEVRGEVLMFKK 189

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQ 254
           DF  LN       +K + NPRNAA+G LR+L+     TR L FF +GLG+       + Q
Sbjct: 190 DFHDLNRRQRENEQKEFVNPRNAAAGSLRQLDSQITATRQLRFFAYGLGELKGSPLPRSQ 249

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L     LG PV +  +    F G++ ++N ++  R +LPY+IDG+VYKV+  + Q++
Sbjct: 250 SALLDWFVQLGIPVCDERKVVKGFKGLMGFFNRIEEKRESLPYEIDGVVYKVNSIAEQQK 309

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ I+HKF  ++  T +LDID+Q+GRTG +TPVARL+PV +GG  +TNATLH
Sbjct: 310 LGFISRAPRFAIAHKFPAQEVLTEVLDIDVQVGRTGAITPVARLKPVFVGGVTVTNATLH 369

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +D+R+GD V+V+RAG+VIP+V+ ++   R  DA+ F  P+ C
Sbjct: 370 NEDEVRR-----------KDVRIGDTVIVRRAGDVIPEVLAVVPERRQADAREFVMPTVC 418

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           P+C S ++R  +       A  RC+GG + C AQ+   L  FVSR A  IEGLG+Q +D 
Sbjct: 419 PVCGSPIIRPEDE------AIARCSGGWIKCPAQKKGGLLLFVSRKALGIEGLGEQLIDQ 472

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     I   AD++TL          +  +    + S +NL   + K +  +  RF
Sbjct: 473 LVDKN----VINDAADLYTL------DLETLSQLDRMAEKSASNLLGELEKSKKTTFARF 522

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIRHVG   AR+LA Y+ +  N  Q               L+ V  +G I+A +I 
Sbjct: 523 LYALGIRHVGEATARALAGYFGNLANLRQASEE----------QLLEVADIGPIVAASIK 572

Query: 614 EFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +F+ + RN+  V+ LL      P     EK      +NKK V TGTL  + R  A E + 
Sbjct: 573 QFFSDERNLALVDKLLGVGLHWPEHEMKEKPEELPFQNKKFVLTGTLPSLTRDAAAEIIR 632

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            LG  VS+ +SR TD ++ G  PGSKL KA++LGV++++E +FL L++   + 
Sbjct: 633 NLGGKVSSSVSRNTDYVLAGSEPGSKLAKAEELGVRVIDENEFLQLVKNDKSN 685


>gi|253996456|ref|YP_003048520.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8]
 gi|253983135|gb|ACT47993.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8]
          Length = 677

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/720 (35%), Positives = 395/720 (54%), Gaps = 47/720 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L +  A   +  L   I+ +D  YY    P + DSEYD + R    +  A+P L  +
Sbjct: 1   MPDLKLSSAELRVLELRGLIARYDYEYYVLDAPSVPDSEYDKIYRELQTLEQAYPSLVVA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++ G    +   +TH    LSL   +   +L  F  RI           + +
Sbjct: 61  ---DSPTQRVSGTATNAFGSITHRQAMLSLNNAFEQSELEAFDKRIREALG---VAQVEY 114

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEV 187
            +EPK DG  IT+ YE G F+  A RGDG++GEDV+  +R +  IP  L+  N P+++EV
Sbjct: 115 AVEPKFDGLAITLTYEHGVFIQGATRGDGYTGEDVTHNLRTLRAIPMRLNCENPPQLLEV 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEV + K DF  LN   +A G K +ANPRNAA+G LR+L+     TR L FF +GLG  
Sbjct: 175 RGEVLMLKRDFDKLNQAQLAKGEKLFANPRNAAAGSLRQLDAKVTATRPLTFFAYGLGVA 234

Query: 247 SEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             + A       +  +  L FPV++         G+  YY ++   R  LP+DIDG+VYK
Sbjct: 235 EGVPALTSHGAAMDYLASLHFPVSSARAVVRGVQGLSDYYEKIGQQRQQLPFDIDGVVYK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++F+ Q +LG  +R+PRW ++HKF  ++A T + DI +Q+GRTG +TPVARL+PV +GG
Sbjct: 295 VNQFNQQNELGFVSRAPRWAVAHKFPAQEALTLVEDITVQVGRTGAITPVARLKPVFVGG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +TNATLHNED I+            +DI +GD V V+RAG+VIP+VV ++V +R   A
Sbjct: 355 VTVTNATLHNEDEIRR-----------KDILIGDTVSVRRAGDVIPEVVSVVVEKRPAHA 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P+ CP C S +++  +       A  RCTGGL C AQ+ + + H+ SR A +IEG
Sbjct: 404 RRFEMPTVCPECGSHILKQADE------AVARCTGGLFCPAQRKQAITHYASRRAMDIEG 457

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ +D   ++      +   AD+++L     ++  ++       + S  N+ D++N  
Sbjct: 458 LGEKLVDQLVEAN----LVHTLADVYSLDIHTLSNLERMA------EKSAQNILDALNAS 507

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +L RFI++LG+R+VG   A+ LAK++ +        N ++A + +D L    V  VG
Sbjct: 508 KDTTLARFIYALGMRNVGEATAKDLAKHFGNL-------NALMAASIEDLLE---VNDVG 557

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRH 664
            I+A++I  F+    N   + ALL      +    ++  +  +  K  V TGTL  + R 
Sbjct: 558 PIVAESIKNFFSEEHNKSVIAALLNAGIHWVETEGKQQATGNLVGKTFVLTGTLPNLARD 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            A+  +   G  VS  +S+KTD ++ G + GSKLEKAQ LGV I++E   L +L +   +
Sbjct: 618 DAKALIEAAGGKVSGSVSKKTDFVVAGADAGSKLEKAQLLGVAIIDEANLLAVLAEGEAS 677


>gi|270159993|ref|ZP_06188649.1| DNA ligase [Legionella longbeachae D-4968]
 gi|269988332|gb|EEZ94587.1| DNA ligase [Legionella longbeachae D-4968]
          Length = 671

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/712 (35%), Positives = 390/712 (54%), Gaps = 46/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I++ +++ + L+ +I  +D  YY   +P++ D EYD   R    +    P+L  +   
Sbjct: 1   MIIDEIKEQAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    +   VTH  P LSL  +++ E+L+ F+ R+     +     + FT E
Sbjct: 58  DSPTQRVGGTPADAFAPVTHRQPMLSLSNVFSEEELQAFVKRVTEKLDEPA-QQLVFTCE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGE 190
           PK+DG  + I YE G  VYAA RGDG +GE+++A I+ I  IP VL  N P    E+RGE
Sbjct: 117 PKLDGLAVNITYENGVLVYAATRGDGTTGENITANIKTIAAIPLVLRSNKPPRFIEIRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           VY+ K+ F   N +   +G K +ANPRNAA+G LR+LNP     R L  + +G+G   + 
Sbjct: 177 VYMPKSGFEQYNKKAKELGEKTFANPRNAAAGSLRQLNPAVTANRPLAIYCYGIGACEDY 236

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E LQ ++ LGF V++  ++     G + YY  M + R  LP++IDG+VYKVD 
Sbjct: 237 RLPNTHWEQLQLLKELGFKVSSESKREVGIKGCLXYYCNMLARRDQLPFEIDGVVYKVDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  +R+PR+  +HKF   +  T +L +D Q+GRTG LTPVARL PVN+ G  +
Sbjct: 297 IALQQQLGFISRAPRFACAHKFPATEEITEILAVDFQVGRTGALTPVARLAPVNVAGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD+V+++RAG+VIP+VV +++ +R  D +  
Sbjct: 357 SNATLHNMDEITR-----------KDIRIGDKVIIRRAGDVIPEVVSVVLEQRPADTKEI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+         A  RC GGL C AQ    + HF SR A +IEGLG 
Sbjct: 406 CLPLKCPVCDSDVVREEGE------AVARCIGGLFCKAQLKRMMWHFASRKAMHIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++           +R   D++ L            N+   G+ S  NL  ++   +  
Sbjct: 460 VLIEQLVDE----GIVRHLPDLYRLDVSTLA------NLPRMGEKSAKNLLQALEHSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF+++LGIR +G   AR LA+++   +          A +N     L+ +  +G + 
Sbjct: 510 TLSRFLYALGIREIGEASARVLAEHFGDIE----------AISNATEADLMSLEDMGPVG 559

Query: 609 AQAIVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  IV F+    N+  ++    L    P I + ++N    +  K +V TGTL  + R +A
Sbjct: 560 AANIVHFFAQTHNLQVIQHLLELGIHWPKIEKKQQNKEHPLFGKTVVLTGTLNTLSREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA VS  +S KTD +I G   G+KL+KA  LG+ I++EEQFL +L
Sbjct: 620 KAKLLILGAKVSGSVSAKTDYVIAGIEAGTKLDKANNLGISILDEEQFLHML 671


>gi|54293931|ref|YP_126346.1| DNA ligase [Legionella pneumophila str. Lens]
 gi|81368949|sp|Q5WXV3|DNLJ_LEGPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53753763|emb|CAH15221.1| DNA ligase [Legionella pneumophila str. Lens]
          Length = 673

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/713 (34%), Positives = 383/713 (53%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 1   MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H  P LSL  ++  ++L+ FI R      +  +  + F  E
Sbjct: 58  DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P  L + N P++IEVRGE
Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G   + 
Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 236

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGIEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 357 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L  +   S          G+ S  NL  ++ K +  
Sbjct: 460 VLIDQLVDE----GIVHHLADLYELDLQTLASL------PRMGEKSAKNLLSALEKSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   +                   L+ +  +G + 
Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVEGLKAAT----------IEELMTLNDIGPVA 559

Query: 609 AQAIVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  +V F+    N+  ++    L    P   + + N  +    K +V TGTL  + R +A
Sbjct: 560 ASHVVHFFAQAHNLEVIDRLLELGIHWPKSEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL  + 
Sbjct: 620 KAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFLKWVN 672


>gi|170727191|ref|YP_001761217.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908]
 gi|254781418|sp|B1KJT5|DNLJ_SHEWM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169812538|gb|ACA87122.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908]
          Length = 670

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/708 (37%), Positives = 381/708 (53%), Gaps = 50/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A +E+  L + I+ H+  YY    P + D+EYD L  R   +    P L     P  P  
Sbjct: 3   AIEEIKQLTETINEHNHSYYVEDSPSVPDAEYDRLINRLKQLEGENPHLCL---PTSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG       ++TH  P LSL+ +++ E+   F  RI      K   +  F  EPK+DG
Sbjct: 60  RVGGMALAKFDQITHLKPMLSLDNVFSEEEFEAFYKRISD----KTSEAPTFCCEPKLDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             ++I Y  G +  AA RGDG +GED+S  +R I +IP  L   N P ++EVRGEV + K
Sbjct: 116 LAVSILYRDGVYERAATRGDGTTGEDISENVRTILSIPLKLRGDNFPPLLEVRGEVIMPK 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI---FA 251
             F ALND   A G K + NPRNAA+G LR+L+     +R L F+ + LG         A
Sbjct: 176 KAFDALNDRARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETWALA 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y+ L ++R  GFPV+  V+Q      +V+YY ++ + R +L Y+IDG+V KVD    
Sbjct: 236 DTHYDQLMQLRAWGFPVSAEVKQCGDVSSVVAYYTDIMTRRDSLDYEIDGVVIKVDSIEH 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q QLG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  ++NA
Sbjct: 296 QGQLGFVAKAPRWATAFKFPAQEEVTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L            ++VGD V+V+RAG+VIP++V I+ ++R  DA+   FP
Sbjct: 356 TLHNADEIARL-----------GVKVGDTVIVRRAGDVIPQIVAIVADKRPDDAREIEFP 404

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S V R          A  RCTGGL C AQ+ E +KHF SR A +I+G+G + +
Sbjct: 405 DTCPVCNSMVERVEGE------AVARCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKVV 458

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S TNL  +I   +  +  
Sbjct: 459 EQLIDKE----LVESPADLFKLTASAITMLDRM------GMKSATNLVAAIEVAKTTTFS 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++ LGIR VG   A +LA Y+ +                 D  S I+V  VG I+AQ 
Sbjct: 509 RFLYGLGIREVGEATAANLANYFKTLDKLKAA----------DAESFIKVDDVGTIVAQH 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYV 670
           +  F+  P N+  V+ L++         E    S  ++ +  V TGTL ++ R+ A+  +
Sbjct: 559 LTHFFAQPHNLEVVDKLIEAGVNWPEIEEVAEESLSLKGQTWVLTGTLTQLNRNDAKARL 618

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             LGA V+  +S+ TD ++ G+  GSKL KAQ LGVK+++EE  L LL
Sbjct: 619 QALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQDLGVKVIDEEALLQLL 666


>gi|116873191|ref|YP_849972.1| NAD-dependent DNA ligase LigA [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466434|sp|A0AJL1|DNLJ_LISW6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116742069|emb|CAK21193.1| DNA ligase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 670

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 366/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P+ P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPDSPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N +DL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFTKVAHDTPMLSLANAFNRDDLADFDRRIRDKVG----DDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIPMKLQKDF--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+      E
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSE 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N    + +Y +E    R+ L YDIDG+V K+++   Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNNLEEVYAYIDEWTEKRAELAYDIDGIVLKLNDLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CGSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 EH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKMA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +                        K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|88861394|ref|ZP_01136024.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
 gi|88816660|gb|EAR26485.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
          Length = 673

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/712 (35%), Positives = 402/712 (56%), Gaps = 46/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E    ++++L+ ++  ++  YY    P + DSEYD + R   A+   +P        + P
Sbjct: 3   ESVLSQIAALKVQLEEYNYQYYVLDNPSVPDSEYDRVMRELIALETQYPQFL---SADSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+GGE   S  +V H +P LSL+  ++  + R F  R+    +  D  ++ F  EPK+
Sbjct: 60  SQKVGGEALGSFSQVQHLVPMLSLDNAFDETEFRSFNKRLQDRLK--DTTTLTFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  ++I Y+ G  V AA RGDG +GE+++  ++ I  +P  L   +IP  +EVRGEV++
Sbjct: 118 DGLAVSILYQDGVLVQAATRGDGQTGENITENVKTIRNVPLKLRGESIPHRLEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
               F  +N+  I    K +ANPRNAA+G LR+L+      R L F+ +G+G     +  
Sbjct: 178 DSAGFAKMNELAIKNDGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYGMGIIEGGVVP 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +  LQ +   G P++   +        ++YY ++ + RS L Y+IDG+V KV++ +L
Sbjct: 238 DDHFAQLQALGDWGLPMSPETKLVTGVDDALAYYQDIMNRRSQLKYEIDGVVIKVNDKAL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  AR+PRW I+ KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++NA
Sbjct: 298 QQTLGFVARAPRWAIAFKFPAQEEMTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D I+ L            +++GD V+++RAG+VIP++  +++ ER  DA+   FP
Sbjct: 358 TLHNQDEIERL-----------GVKIGDTVIIRRAGDVIPQITQVVLAERKTDAKDIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP+CQS+V R +        A  RC+GGL C AQ+ E +KHFVSR AF+I+G+G + +
Sbjct: 407 SNCPVCQSKVERTVGE------AVARCSGGLVCGAQRKEAIKHFVSRKAFDIDGMGDKIV 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   + E     I  PA+IFTL++    S  ++      G  S   L  +I   +  +L 
Sbjct: 461 EQLVERE----LIHTPAEIFTLRQGHLESLERM------GPKSAEKLVAAIGNAKQTTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA +YL+        + I+A + D       V  VG+I+A+ 
Sbjct: 511 RFLYSLGIREVGEATALNLANHYLTL-------DAIMAASVDSLQE---VADVGEIVAKH 560

Query: 612 IVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +  F++   N   V+AL+   ++ +    +      +     V TGTL ++ R  A+  +
Sbjct: 561 VNFFFREAHNRAVVDALIAAGITWAALEPKSEAEQPLAGLTYVLTGTLLQMGRSDAKNRL 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA VS  +S KTD ++ GD  GSKL KAQ+LG+K++ E+  + LL QYN
Sbjct: 621 QALGAKVSGSVSAKTDALVAGDKAGSKLTKAQELGIKVLFEDDLIALLAQYN 672


>gi|126659779|ref|ZP_01730906.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110]
 gi|126618931|gb|EAZ89673.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110]
          Length = 677

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/718 (33%), Positives = 386/718 (53%), Gaps = 52/718 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L +EQ    ++ L Q++   +  YY    PI+ D+ YD L R  D +    P L   
Sbjct: 3   VENLGVEQ---RVTQLRQQLQKANYAYYVLDDPIMEDAVYDQLYRELDNLEKEHPQLI-- 57

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  ++G +       VTH+IP  SLE  +N+++L+ +  R  R+ +K+D ++I +
Sbjct: 58  -TPDSPTQRVGDKPASQFVSVTHNIPLYSLENAFNLDELKAWKNRWQRYSEKEDLDTIEY 116

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEV 187
             E KIDG+ + + YE G  +    RGDG +GED++  IR I +IP  L+L N P +IEV
Sbjct: 117 VCELKIDGSALALTYENGLLIRGVTRGDGTTGEDITQNIRTIRSIPLKLNLDNPPPMIEV 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246
           RGE ++  ++F  +N E    G   +ANPRNAA+G LR+L+P  +  R L FF + L   
Sbjct: 177 RGEAFLPLDEFDRINQEREEKGEALFANPRNAAAGTLRQLDPKIVDQRRLQFFAYTL-HL 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E     Q++ L  ++  GF VN   +   +   +  Y+ + ++ R  LPY  DG+V K+
Sbjct: 236 EETEISSQWQSLNYLQNSGFLVNPHRKLCQSLDEVADYFKQWETARKDLPYMTDGVVVKI 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +++SLQK LG   + PRW I+ K+  ++A T + DI + +GRTG +TP+A ++PV++ G 
Sbjct: 296 NDYSLQKALGFTQKFPRWAIALKYPAEEAPTIVKDIIVNVGRTGAVTPMAVMKPVHLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I  L           DIRVGD V++++AGE+IP+VV ++   R PD Q
Sbjct: 356 TVQKATLHNSDRISQL-----------DIRVGDTVIIRKAGEIIPEVVRVLKELRPPDTQ 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+  P  CP C S ++R          A  RC   L+C+A     L H+ SRDA +I GL
Sbjct: 405 PYEMPDRCPECNSLLIRPPEE------AVLRCMN-LSCNAILKGSLVHWSSRDALDIRGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +     +E     +   AD++ L         KI N+   G  S  NL  +I   +
Sbjct: 458 GERIVVLLIDNE----LVNSIADLYYLTP------EKIANLERMGSKSADNLIKAIEGSK 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                R ++ LGIR+VG+  A  L + +LS    +Q            + SL  V  VG 
Sbjct: 508 QQPFSRVLYGLGIRYVGSVTANLLTENFLSIDQLSQA----------SFTSLCSVYGVGG 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            IAQ+I++++   +N   ++ L K     E++ S     ++  + +  K  V TGTL  +
Sbjct: 558 EIAQSIIDWFSIQKNYDLIQQLKKVGLQLEITSSEKNTVESSLTPLSGKTFVITGTLPTL 617

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R +A+  + + G  V+  +S+KTD +++G+N GSKL KAQ+LG+  ++E   L  LQ
Sbjct: 618 NRTEAKTLIEKAGGKVTGSISKKTDYLLLGENAGSKLIKAQELGITQLSEADLLAFLQ 675


>gi|163938297|ref|YP_001643181.1| NAD-dependent DNA ligase LigA [Bacillus weihenstephanensis KBAB4]
 gi|229165272|ref|ZP_04293059.1| DNA ligase [Bacillus cereus AH621]
 gi|254781256|sp|A9VRG3|DNLJ_BACWK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163860494|gb|ABY41553.1| DNA ligase, NAD-dependent [Bacillus weihenstephanensis KBAB4]
 gi|228618097|gb|EEK75135.1| DNA ligase [Bacillus cereus AH621]
          Length = 669

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 IQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLELER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELK----------TINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|237807406|ref|YP_002891846.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187]
 gi|237499667|gb|ACQ92260.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187]
          Length = 686

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/718 (35%), Positives = 403/718 (56%), Gaps = 53/718 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + + +  + +L+Q +  ++  YY + +P + D+EYD L      +  A P      D N 
Sbjct: 1   MNEIQSRMHALQQLLERYNTEYYLHDEPSVPDAEYDRLMNELRELEAANPQWL---DVNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    S   V H  P LSL+ ++N EDL  F  R+       D  +I F  EPK
Sbjct: 58  PTQRVGGVALTSFGSVQHEQPMLSLDNVFNAEDLAAFGRRVQERLLSND--AITFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE+G+ V AA RGDG +GED++  +R I  IP  L   NIP  IEVRGEV+
Sbjct: 116 LDGLAVSILYEQGELVRAATRGDGVTGEDITRNVRTIRVIPLRLSGDNIPARIEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE--I 249
           + K  F   N++ +  G K +ANPRNAA+G LR+L+P     R L F+ + +G   E   
Sbjct: 176 MPKAGFERWNEQALVRGDKVFANPRNAAAGSLRQLDPAITAQRPLAFYAYAIGVVDEATE 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                Y  +Q ++  G PV + +RQ     G   Y++++ + R  LP++IDG+V+KVD  
Sbjct: 236 LPDSHYARMQYLKQFGLPVCDEIRQVVGVEGCQIYHDDILAKRDALPFEIDGVVFKVDTI 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ LG  +R+PRW ++HKF  ++  TRL D++ Q+GRTG +TPVARLEPV +GG  ++
Sbjct: 296 AQQQMLGFVSRAPRWAVAHKFPAQEELTRLNDVEFQVGRTGAITPVARLEPVQVGGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            +++GD V+V+RAG+VIP++V+++++ R    +   
Sbjct: 356 NATLHNADEITRL-----------GVKIGDWVVVRRAGDVIPQIVNVVLDRRDASCRDID 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S+V R          A  RC+GGL C+AQ+ E LKHFVSR A +I+G+G +
Sbjct: 405 FPERCPVCDSQVERLPGE------AVARCSGGLYCAAQRKEALKHFVSRRAMDIDGIGDK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     +  PAD+F L + Q     ++      G+ S   L +++   R  +
Sbjct: 459 LIEQLVDHE----LVHTPADLFALTKAQLLGLERM------GEKSADKLLNALQSARETT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+F+LGIR +G   A++LA+++           ++ A  +    +L++V  VG+++A
Sbjct: 509 FARFLFALGIREIGETTAQTLAQHFS----------DLPALQDASVETLLKVSDVGEVMA 558

Query: 610 QAIVEFYQNPRNICAVEALLKE-------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           + I  F++   N+  ++ LL         +S          +  +  K LV TGTL ++ 
Sbjct: 559 KHIYYFFRQEHNLEVIQRLLAPISEGGAGISWQPVARVAVDALPLNGKTLVLTGTLSQLN 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R  A++ +  LGA V+  +S KTD++I G+  GSKLEKAQQLGV +  E++ + LLQ 
Sbjct: 619 RDAAKQALQALGAKVAGSVSAKTDLVIAGEAAGSKLEKAQQLGVPVWGEDELVALLQD 676


>gi|296046583|gb|ADG86433.1| NAD-dependent DNA ligase [Francisella novicida]
          Length = 673

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/715 (34%), Positives = 382/715 (53%), Gaps = 47/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     ++++ L   +  H   YY    P I D+EYD L ++  A+    P+L  +   
Sbjct: 1   MTPS-ISEQINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG       +V H +P LSL+  ++ ++   F  RI       +   + F  E
Sbjct: 57  DSPTQKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTE--ELTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  ++I Y  G  V AA RGDG +GE+V+  ++ I  +P  L   + P  +EVRGE
Sbjct: 115 PKLDGLAVSIIYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSE 248
           V++    F   N E    G K + NPRNAA+G LR+L+      R L F+ +  G     
Sbjct: 175 VFMDNAGFEKFNIEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADG 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A+  Y+ L+K+   G P+    +        ++YY ++ + R  L Y+IDG+V K+++
Sbjct: 235 SIAEDHYQQLEKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQ 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  +
Sbjct: 295 KALQERLGFVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            ++VGD V+++RAG+VIP++  +++  R  DA+  
Sbjct: 355 SNATLHNGDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CPIC S V +          A  RCTGGL C AQ+ + +KHF SR A +I+GLG 
Sbjct: 404 EFPVTCPICDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D     E     I+ PAD+F L++    S  ++      G  S  NL  ++   +  
Sbjct: 458 KIVDQLVDRE----LIKTPADLFILKQGHFESLERM------GPKSAKNLVTALQDAKAT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L +F++SLGIR  G    ++LA ++L+ +N            N    SL +V  VG+I+
Sbjct: 508 TLAKFLYSLGIREAGEATTQNLANHFLTLENV----------INASIDSLTQVSDVGEIV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A  +  F+    N+  V AL+++                +     V TGTL  + R+ A+
Sbjct: 558 ATHVRSFFAEQHNLDVVNALVEQGINWPELTPPSAQEQPLAGLVYVLTGTLNTLNRNDAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             + QLGA VS  +S KTD ++ G+  GSKL KAQ LG+ ++ EE  + LL+Q+N
Sbjct: 618 ARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEEDLINLLEQHN 672


>gi|120611505|ref|YP_971183.1| DNA ligase [Acidovorax citrulli AAC00-1]
 gi|166215380|sp|A1TR21|DNLJ_ACIAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120589969|gb|ABM33409.1| DNA ligase, NAD-dependent [Acidovorax citrulli AAC00-1]
          Length = 732

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/756 (34%), Positives = 384/756 (50%), Gaps = 89/756 (11%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + E      ++L  ++      YY    P + D+EYD + +   A+  A P+L     P+
Sbjct: 15  APEDLGLRAAALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQALETAHPELV---TPD 71

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK--FITRIYRFWQKKDD-NSIFFT 129
            P  ++ G +   L  V H++P LS+    + E      F  R+ R  +   D   + + 
Sbjct: 72  SPTQRVIGAVMEGLTPVRHTVPMLSIRTETDTEASGAETFDARVRRELKLAPDAPPVEYV 131

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEII 185
            EPK DG  +++RYE G+ V AA RGDG  GEDV+  IR I  IP  L       +P ++
Sbjct: 132 AEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLPTGGRYGVPPVL 191

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEVY+ + DF  LN+     G K + NPRNAA+G +R+L+      R L+FF +GLG
Sbjct: 192 EVRGEVYMRRADFDRLNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLG 251

Query: 245 KT-----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
                          ++ML++++  GFPV   VR A     +V+++ E+ + R  LPYDI
Sbjct: 252 DITPAAEGGPDFATHFDMLRQLKAWGFPVAAQVRTARGASELVAFHQEVGASRDQLPYDI 311

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV+  +LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+GRTG LTPVARL 
Sbjct: 312 DGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLA 371

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHN   I+            + +RVGD+V+V+RAG+VIP+VV  +  
Sbjct: 372 PVFVGGVTVTNATLHNLFEIRK-----------KGVRVGDQVIVRRAGDVIPEVVGTVPA 420

Query: 420 E-----------------------------------RHPDAQPFSFPSFCPICQSRVVRD 444
                                               R P    F  P  CPIC S VVR+
Sbjct: 421 ALLPVAGALQGSDALADAASGADGTAPGADAARAAPRSPYVPNFRMPRQCPICGSTVVRE 480

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                    A HRCTGGL C AQ+ E L HF  R A +IEGLG++ +D   + +     I
Sbjct: 481 KGE------ANHRCTGGLFCPAQRKEALLHFAQRRAMDIEGLGEKLVDQLVEGQ----VI 530

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           R   D++ L        T + ++    + S  N+  ++ K ++ +L RF+F LGIRHVG 
Sbjct: 531 RTLPDLYRL------GLTALSSLDRMAEKSAQNVLAALEKSKHTTLPRFLFGLGIRHVGE 584

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A+ LA+++                       L+ V  VG ++A+AI  F+  P N   
Sbjct: 585 ATAKDLARHFGGLDAIMDA----------SVEQLLEVNDVGPVVAEAIHTFFAQPHNREV 634

Query: 625 VEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           VE      V+   G   +  +  +  K  V TGTL  + R  A++ +   GA V+  +SR
Sbjct: 635 VEQLRACGVTWKEGPPAERATLPLAGKTFVLTGTLPTLSREDAKDRLEAAGAKVAGSVSR 694

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KT  ++ G+  GSKL KAQ+LGV +++E   L LLQ
Sbjct: 695 KTHYVVAGEEAGSKLAKAQELGVPVLDEAGMLALLQ 730


>gi|311067136|ref|YP_003972059.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942]
 gi|310867653|gb|ADP31128.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942]
          Length = 668

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/715 (33%), Positives = 397/715 (55%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++    L   I+ +   YY   +P + DSEYD L +    +    PDL     P
Sbjct: 1   MDKEAAKRRAEDLRSTINQYSYEYYTLDEPSVPDSEYDKLMQELLDLEEEHPDL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KV H  P LSL   +N EDLR F  R+ +       + + + +E
Sbjct: 58  DSPTQRVGGAVIDAFQKVRHGTPMLSLGNAFNAEDLRDFDRRVRQAVG----DDVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  N+   IEVRGE 
Sbjct: 114 LKIDGLAVSLRYENGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNL--SIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 YMPKRSFEALNEERLKKEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q + L  +  +GF  N   ++  T   ++    E+++ R+ LPY+IDG+V KVD   
Sbjct: 232 VDTQSQGLDFLDEIGFKTNQERKKCGTIDEVIDMIEELQAKRADLPYEIDGIVVKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T LLDI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTTLLDIELNVGRTGVITPTAVLEPVKVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+ D+V++K+AG++IP+VV+++  +R    + F+ 
Sbjct: 352 ASLHNEDLIR-----------EKDIRILDKVVIKKAGDIIPEVVNVLTEQRTGQEKEFNM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTTCPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     +R  AD++ L +       ++  +   G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFQEK----LVRNVADLYKLTK------ERVIQLERMGEKSTDNLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S  +  +           +   L+ +  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLDHLKKA----------NKEELLAIDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-----SSEIENKKLVFTGTLQKIQRHK 665
           A++ ++Q    +  ++ L +    ++ +  K V      S    K +V TG L+++ R+ 
Sbjct: 554 AVITYFQKEEMLELLDELEQLGVNTLYKGPKKVKVEDSDSYFAGKTIVLTGKLEELSRND 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+ TD++I G+  GSKL KA++L +++ NEEQ L  L++
Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAEELNIEVWNEEQLLGELKK 668


>gi|77360026|ref|YP_339601.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
 gi|123730523|sp|Q3IKB8|DNLJ_PSEHT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76874937|emb|CAI86158.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
          Length = 673

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/708 (34%), Positives = 380/708 (53%), Gaps = 46/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++++ L   +  H   YY    P I D+EYD L ++  A+    P+L  +   + P  K+
Sbjct: 7   EQINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITA---DSPTQKV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG       +V H +P LSL+  ++ ++   F  RI       +   + F  EPK+DG  
Sbjct: 64  GGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTE--ELTFCCEPKLDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197
           ++I Y  G  V AA RGDG +GE+V+  ++ I  +P  L   + P  +EVRGEV++    
Sbjct: 122 VSIIYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGEVFMDNAG 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQY 255
           F   N E    G K + NPRNAA+G LR+L+      R L F+ +  G       A+  Y
Sbjct: 182 FEKFNIEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIAEDHY 241

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L+K+   G P+    +        ++YY ++ + R  L Y+IDG+V K+++ +LQ++L
Sbjct: 242 QQLEKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQKALQERL 301

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++NATLHN
Sbjct: 302 GFVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHN 361

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L            ++VGD V+++RAG+VIP++  +++  R  DA+   FP  CP
Sbjct: 362 GDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPVTCP 410

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           IC S V +          A  RCTGGL C AQ+ + +KHF SR A +I+GLG + +D   
Sbjct: 411 ICDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLV 464

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             E     I+ PAD+F L++    S  ++      G  S  NL  ++   +  +L +F++
Sbjct: 465 DRE----LIKTPADLFILKQGHFESLERM------GPKSAKNLVTALQDAKATTLAKFLY 514

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGIR  G    ++LA ++L+ +N            N    SL +V  VG+I+A  +  F
Sbjct: 515 SLGIREAGEATTQNLANHFLTLENV----------INASIDSLTQVSDVGEIVATHVRSF 564

Query: 616 YQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +    N+  V AL+++                +     V TGTL  + R+ A+  + QLG
Sbjct: 565 FAEQHNLDVVNALVEQGINWPELTPPSAQEQPLAGLVYVLTGTLNTLNRNDAKARLQQLG 624

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A VS  +S KTD ++ G+  GSKL KAQ LG+ ++ EE  + LL+Q+N
Sbjct: 625 AKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEEDLINLLEQHN 672


>gi|169825829|ref|YP_001695987.1| DNA ligase [Lysinibacillus sphaericus C3-41]
 gi|254781361|sp|B1HTW6|DNLJ_LYSSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168990317|gb|ACA37857.1| DNA ligase [Lysinibacillus sphaericus C3-41]
          Length = 667

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/715 (33%), Positives = 386/715 (53%), Gaps = 56/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  + ++ L + +  +   YY   KP++ DS YD L     A+  A P L     P+ 
Sbjct: 1   MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLHELIALEEANPSLIF---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KVTH  P LSL   +N  DL++F  ++ +           +  E K
Sbjct: 58  PTQRVGGTVVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKVRQAIGDH----FSYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+++YE G FV  A RGDG  GE+++A ++ I  IP  L    P  IEVRGE Y+
Sbjct: 114 IDGLAISLKYENGVFVQGATRGDGVVGEEITANLKTIHAIPLRLKE--PITIEVRGEAYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FA 251
            K  F  LN +    G + +ANPRNAA+G LR+L+P     R L+ F++ +G   EI   
Sbjct: 172 PKKSFEKLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEIYGI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G  EML  +  LGFP N   ++ +T   ++++       R  L Y+IDG+V KVD ++ 
Sbjct: 232 DGHAEMLDYLEDLGFPSNKERQRCSTIEEVMAFIEHWTENRPHLAYEIDGIVIKVDRYAQ 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  A+SPRW I++KF  ++  T LLDID+ +GRTG++TP A L PV + G  +  A
Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +DIR+GD V++++AG++IP+VV +++ +R  ++ PF  P
Sbjct: 352 SLHNEDLIRD-----------KDIRLGDTVIIRKAGDIIPQVVGVLIEQRPENSVPFEMP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S ++R           A RC    AC AQ  E +K+FVSR+A NI+GLG + +
Sbjct: 401 KNCPVCDSELIRIEGE------VALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +    A  I   +D++ L   Q     ++      G+ S TNL ++I   +  S+E
Sbjct: 454 EQLLR----ADLIHDVSDLYHLTIEQLVELERM------GEKSATNLVNAIQASKENSME 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  LGIRHVG + A+ +++ + S +                   L+ +  +GD +A +
Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEQFGSMEAVMAATEE----------QLVAIYEIGDKMASS 553

Query: 612 IVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +VE++ N      +E L +                  +    K +V TG L+++ R++A+
Sbjct: 554 LVEYFSNDDARAVIERLAEVGVNMTFKGKKVEVVVGDNPFAGKTIVLTGKLEQLTRNEAK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             + +LG  V+  +S+KTD++I G++ GSKL KA+QLG+++ NE+    L++Q N
Sbjct: 614 AKIEELGGTVTGSVSKKTDLVIAGEDAGSKLAKAEQLGIEVWNED---NLIEQLN 665


>gi|229015686|ref|ZP_04172669.1| DNA ligase [Bacillus cereus AH1273]
 gi|229021878|ref|ZP_04178448.1| DNA ligase [Bacillus cereus AH1272]
 gi|228739424|gb|EEL89850.1| DNA ligase [Bacillus cereus AH1272]
 gi|228745603|gb|EEL95622.1| DNA ligase [Bacillus cereus AH1273]
          Length = 669

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/715 (34%), Positives = 390/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMGE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTVVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC    AC AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIESSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELK----------TINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|88800009|ref|ZP_01115580.1| DNA ligase, NAD-dependent [Reinekea sp. MED297]
 gi|88777287|gb|EAR08491.1| DNA ligase, NAD-dependent [Reinekea sp. MED297]
          Length = 674

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/712 (36%), Positives = 389/712 (54%), Gaps = 45/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +      +L Q+I  +D  YY  ++  I D EYD L      I    P       P  
Sbjct: 1   MTELHDRYQALIQQIRRYDHEYYVLNESAIPDVEYDRLMEELKRIESEHPQWV---TPQS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++ G        V H +P LSL+  +N +DL  F+ R+       D + I F  EPK
Sbjct: 58  PTQRVAGAPQAGFETVEHRMPMLSLDNAFNHDDLGAFVKRLKDRLN--DPSPIEFACEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE+G  V  A RGDG +GED++A +R I +IP  L  +  PE++EVRGE+Y
Sbjct: 116 LDGIAVSLLYEQGHLVRGATRGDGTTGEDITANVRTIRSIPLSLQGDGWPEVLEVRGEIY 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K  F  +NDE    G K + NPRNAASG LR+L+     TR L    + +G       
Sbjct: 176 MPKAGFERMNDEARERGDKVFVNPRNAASGSLRQLDSRLTATRPLEMCCYSVGVFEGGTL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QY+++QK    G  +N  +       G++ YY++++  R+ LPY+IDG+VYKV+ F 
Sbjct: 236 PDTQYQLMQKFSEWGLKINPEMALVTDVQGLLDYYDQLEQKRNGLPYEIDGIVYKVNSFG 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  +R+PRW I+ KF  ++  T LLD++ Q+GRTG LTPVARLEPV +GG  ++N
Sbjct: 296 LQRRLGFVSRAPRWAIARKFPAQEEVTTLLDVEFQVGRTGALTPVARLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           D+ +GDRV+V+RAG+VIP+VV  +  +R P+A+P + 
Sbjct: 356 ATLHNMDEIERL-----------DVHIGDRVIVRRAGDVIPQVVKSLAEDRSPEARPITA 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S+V R          A  RCTGG+ CSAQ+ E LKHFVSR A +I+G G++ 
Sbjct: 405 PEECPECGSKVDRVAGE------AVMRCTGGMICSAQRREALKHFVSRKAMDIDGFGEKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D           I   +DIF L + + ++  ++      GD S  NL  +I+  R  +L
Sbjct: 459 VDALLAGNK----IHAASDIFELTQEEVSALERM------GDKSAANLIAAIDAARETTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   AR+LA ++ + +                   L+ V  VG  +A 
Sbjct: 509 ARFIFALGIREVGETTARNLAMHFGTIEKLMSATEA----------QLLDVEDVGPKVAA 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            +V ++   +N   ++ L+              +S +  +  V TG + ++ R +A++Y+
Sbjct: 559 HVVNYFSEEQNRIEIQRLIALGVTWDDPIPDQSASVLAGQTWVVTGKISQMSRDEAKDYL 618

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            QLGA V+  +S KT  ++ G   GSKL KA++LGV +M+E +F+  L Q  
Sbjct: 619 LQLGAKVAGSVSAKTTQVVAGPGAGSKLRKAEELGVPVMDEAEFVEWLTQQG 670


>gi|332558050|ref|ZP_08412372.1| DNA ligase [Rhodobacter sphaeroides WS8N]
 gi|332275762|gb|EGJ21077.1| DNA ligase [Rhodobacter sphaeroides WS8N]
          Length = 704

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/712 (42%), Positives = 438/712 (61%), Gaps = 17/712 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L+  +A  EL+ L + I   +  Y+ +  P I D++YDALK R  AI   FP+L R
Sbjct: 6   PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALKLRNRAIEEQFPELRR 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S   + P +++GG +     KV H +  LSLE  +++ ++  +I RI R+     D  + 
Sbjct: 66  S---DSPSDRVGGALAEGFAKVRHDVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYEKG  V AA RGDG +GE+V+   R I  +P  L  + P+++EV
Sbjct: 121 FTAEPKIDGLSLSLRYEKGHLVQAATRGDGETGENVTENARTIADLPTEL-DSAPDLLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    A G++ +ANPRNAA+G LR+L+P    +R L FF +  G  
Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q+E + ++  LGF  N   R       +++ + E++  R+ L YDIDG+VYKV
Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ++LG RA +PRW I+HKFA + A T+L  IDIQ+GRTG L+PVARL+PV +GG 
Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R   A 
Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C S  +R+         +  RCTGGL C AQQ+ERLKHFVSR AF+IEGL
Sbjct: 420 PYRFPETCPECGSEAIREPG------DSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++  ++       IR PADIF L  R +    ++EN  G+G  S  NL+ +I  RR
Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L R IF+LGIRHVG   A  LA +Y S+  F   +         +W  L+ +  VG 
Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A ++V  +       AV+AL   ++         V+S +  + +VFTGTL+K+ R +A
Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGRIVVFTGTLEKMSRAEA 649

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA VS  +S +TD+++ G   GSK ++A  LG++ ++E+ +L L+
Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLI 701


>gi|121594439|ref|YP_986335.1| DNA ligase [Acidovorax sp. JS42]
 gi|166215384|sp|A1W7N4|DNLJ_ACISJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120606519|gb|ABM42259.1| DNA ligase, NAD-dependent [Acidovorax sp. JS42]
          Length = 731

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/741 (33%), Positives = 384/741 (51%), Gaps = 81/741 (10%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +L ++++     YY    P + D+EYD   ++  A+  A+PDL     P+ P  ++ 
Sbjct: 22  KIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQQLQALEGAYPDLV---TPDSPTQRVL 78

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFTLEPKIDG 136
           G +   L  V H +P LS+    + E    + F  R+ R  +   D   + +  EPK DG
Sbjct: 79  GAVLDGLTPVRHRVPMLSIRTETDTEASGAQAFDARVRRELKLPPDAPPVEYVAEPKFDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++RYE G+ V AA RGDG  GEDV+  +R I  IP  L   +P ++EVRGEVY+ + 
Sbjct: 139 LAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLPAGVPPVLEVRGEVYMRRA 198

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT-----SEIF 250
           DF ALN+     G K + NPRNAA+G +R+L+      R L+FF +GLG+          
Sbjct: 199 DFDALNERQREKGDKTFVNPRNAAAGAVRQLDSGITAQRPLSFFAYGLGEVTPAAEGGPD 258

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               + MLQ+++  GFPV   V+ A     +++++  + + R  LPYDIDG+VYKV+  +
Sbjct: 259 FGTHFGMLQQLKEWGFPVAAQVQIAQGASELIAFHQRVGAERDALPYDIDGVVYKVNSLA 318

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+GRTG LTPVARL PV +GG  +TN
Sbjct: 319 LQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGVTVTN 378

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN----------- 419
           ATLHN   ++            + +RVGD+V+V+RAG+VIP+VV ++             
Sbjct: 379 ATLHNLFELRR-----------KKVRVGDQVIVRRAGDVIPEVVGVVPAGAGLAVLAGSD 427

Query: 420 --------------------ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459
                                R P    F  P  CPIC S VVR+           HRC+
Sbjct: 428 ALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVREPGE------VNHRCS 481

Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
           GGL C AQ+ + + HF  R A +IEGLG++ +D           IR   D++ L      
Sbjct: 482 GGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVD----GHVIRTLPDLYRL------ 531

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
             + +  +    + S  N+ D+++K +  +L RF+F LGIRHVG   A+ LA+++     
Sbjct: 532 GLSSLAQLDRMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHFGQLDA 591

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGR 638
                             L++V  VG ++A+AI  F+  P N   VE L    V+     
Sbjct: 592 IMDA----------GVEQLLQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWDESE 641

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                +  +    +V TGTL  + R  A++ +   GA V+  +S+KT  ++ G + GSKL
Sbjct: 642 PAAAATLPLAGMTVVLTGTLPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAGSKL 701

Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719
            KAQ+LG+ +++E+    LL+
Sbjct: 702 AKAQELGIPVLDEDGLHALLR 722


>gi|311029281|ref|ZP_07707371.1| NAD-dependent DNA ligase LigA [Bacillus sp. m3-13]
          Length = 668

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/714 (34%), Positives = 388/714 (54%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQA K +  L   ++ ++  Y+   KP + D+EYD+L +    +    P+L   +  
Sbjct: 1   MEREQAEKRVRELHDVLNQYNYEYHVLDKPSVSDAEYDSLLQELLTLEKEHPEL---QTE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KV H  P LSL   +N +DLR F  R+ +       + + +  E
Sbjct: 58  DSPTQRVGGNILEMFNKVEHRTPMLSLGNAFNEDDLRDFDRRVKQAVG----DDVTYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I +IP  L    P  +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGLFVLGATRGDGTTGEDITMNLKTIKSIPLRLKE--PVTMEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ KN F  LN   +    +P+ANPRNAA+G LR+L+P     R L+ +V+ L    E  
Sbjct: 172 YMPKNSFEKLNAAKMEREEEPFANPRNAAAGSLRQLDPKIAASRNLSVYVYSLADAGEAG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   +   +   ++ Y     + R  L YDIDG+V KVD   
Sbjct: 232 VDSHSEALDYLDKLGFKTNTERKVCTSIEEVLEYVTAWHTKRPDLSYDIDGIVIKVDNTE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++ +T+LLDI++ IGRTG++TP A LEPV + G  +  
Sbjct: 292 HQEQLGFTAKSPRWAIAYKFPAEEVTTKLLDIELNIGRTGVVTPTAILEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DI++GD V+VK+AG++IP+VV+++V++R  + + F+ 
Sbjct: 352 ASLHNEDLIR-----------EKDIKLGDTVIVKKAGDIIPEVVNVLVDQRTGEERDFTM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECESELVRIEGE------VALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       I   AD++ L + Q     ++      G+ S  NL  +I K ++ SL
Sbjct: 454 IAQLFREN----LIEDVADLYKLTKEQLLELERM------GEKSADNLISAIEKTKDNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR VGA+ A++LA+ +      A+     +            +  +GD +A 
Sbjct: 504 ERLLFGLGIRLVGAKAAKTLAQEFDHMDQLARLTKEELTA----------IHEIGDKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           +IV +++ P     +  L +       +  K VS+E        K +V TG L+++ R+ 
Sbjct: 554 SIVTYFEQPEVEELLAELKELGVNMAYKGPKPVSAEDVDSYFAGKTIVLTGKLEEMSRND 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+  + QLG  V+  +S+ T ++I G+  GSKL KAQ+LG+++ NE Q L  +Q
Sbjct: 614 AKAAIEQLGGKVTGSVSKNTHLVIAGEEAGSKLTKAQELGIEVWNEAQMLKEIQ 667


>gi|156740882|ref|YP_001431011.1| DNA ligase [Roseiflexus castenholzii DSM 13941]
 gi|190359279|sp|A7NHP6|DNLJ_ROSCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156232210|gb|ABU56993.1| DNA ligase, NAD-dependent [Roseiflexus castenholzii DSM 13941]
          Length = 718

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/729 (34%), Positives = 382/729 (52%), Gaps = 58/729 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     +   +L ++I YH+  YY   +P+I D+EYDAL R    +  A P+L     P
Sbjct: 1   MTSNDPVRRAETLREQIRYHNYRYYVLDEPVISDAEYDALMRELRELEAAHPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G   +    KV H +P LSL   ++   +R +  R  R      D  + F +E
Sbjct: 58  DSPTQRVGAPPSEQFAKVQHVVPMLSLANAFDEAGMRAWYDRTLRLLGS--DAQVAFVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS------------L 179
           PKIDG  +T+ Y  G  V  A RGDG  GEDV+A +R I +IP  L              
Sbjct: 116 PKIDGLAVTLIYRNGVLVRGATRGDGEIGEDVTANLRTISSIPLRLGSFANDDSAPTNPT 175

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNF 238
            +P ++EVRGEVY+   DF+ LN+++   G K  ANPRNAA+G LR+ +P   +R  L F
Sbjct: 176 AVPPLLEVRGEVYMRIADFMRLNEQLAVAGEKVAANPRNAAAGSLRQKDPAVTSRRPLRF 235

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +G+G+   +  + Q+E L  +R LGFPVN   R+   F   ++Y  E  + R  L Y+
Sbjct: 236 FAYGVGQVEGVALQTQWETLHFLRALGFPVNRDARRFERFEEALAYCREWMTRRDELEYE 295

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           +DG+V K+D F+ Q +LG   R PRW I+ KF  ++A +RLLDI + +GRTG++TP A +
Sbjct: 296 VDGVVVKIDSFAQQAELGVVGRDPRWAIAFKFPAREAVSRLLDIVVNVGRTGVITPNAVI 355

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPVNIGG  + NA+LHN DYI             RDIR+GD V+VKRAG+VIP +V  +V
Sbjct: 356 EPVNIGGVTVRNASLHNADYI-----------AERDIRIGDYVIVKRAGDVIPHIVGPVV 404

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R    + +  P+ CP C + + R           A+RC     C AQ   R++HFVSR
Sbjct: 405 ARRDGSERVWQMPATCPACGTPLERAEGE------VAYRCPNFGICPAQITRRIEHFVSR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I G+G++Q+  F +       ++  AD++TL             I G+G   + NL
Sbjct: 459 SAMDIAGIGEKQVQLFVER----GWVQDVADLYTLTP------EHFHGIEGYGPKRIANL 508

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            ++I + ++  L R I  LGIR+VG  +A+ LA ++ S    A    + I          
Sbjct: 509 LNAIAESKDRPLHRLIVGLGIRYVGEVVAQILADHFGSLDALAAASADEID--------- 559

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTG 656
             +  +G  IA ++ E++  P +   +  L +    +  +          +  K  V TG
Sbjct: 560 -DLEGIGPAIAASVAEYFARPESKALIAKLKRVGVRTEAKGPAVAPKGDALAGKTFVITG 618

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFL 715
           TL  + R +A   +   G  VS  +S+KTD ++VG  P G+K+ KAQ+LG+  ++E   L
Sbjct: 619 TLPSMSREEAGALIVAHGGRVSGSVSKKTDYLVVGSEPGGTKVAKAQELGIPTLDEAGLL 678

Query: 716 FLLQQYNTT 724
            L+   + +
Sbjct: 679 ALIGANDRS 687


>gi|319655032|ref|ZP_08009103.1| DNA ligase [Bacillus sp. 2_A_57_CT2]
 gi|317393299|gb|EFV74066.1| DNA ligase [Bacillus sp. 2_A_57_CT2]
          Length = 668

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/715 (33%), Positives = 382/715 (53%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + ++ A K +  L   ++ ++  Y+   +P + D+EYD L R    +   FP+L      
Sbjct: 1   MDLQLAEKRVKDLHNLLNQYNYEYHVLDQPSVPDAEYDRLMRDLIELEGQFPELKTE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE+     KV H    LSL   ++ +DLR F  R+     +    ++ +  E
Sbjct: 58  DSPTQRVGGEILDMFEKVEHQSQMLSLGNAFSEQDLRDFDRRVR----QGAGENVSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G F   A RGDG  GE+++A ++ I +IP  L  ++   +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGLFTLGATRGDGSIGENITANLKTIRSIPLRLKESV--TMEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ +  F  LN      G +P+ANPRNAA+G LR+L+P     R L+ FV+G+    +  
Sbjct: 172 FMPRRSFEKLNKAKEENGEEPFANPRNAAAGSLRQLDPRLAAKRNLDIFVYGIANVGDTG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   ++  +   ++ Y       R  L YDIDG+V KVD   
Sbjct: 232 VVSHSEGLDYLDSLGFKTNKERKRCESIEKVIEYVQGWTDKRPNLSYDIDGIVIKVDSLE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++  T L DI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 SQEQLGTTAKSPRWAIAYKFPAEEVVTTLRDIELSVGRTGVVTPTALLEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DI++GD+V+VK+AG++IP+VV+++ + R  + Q F+ 
Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDQVVVKKAGDIIPEVVNVLADRRTGEEQDFNM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECESELVRLDGE------VALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F        I+  ADI+ L   Q     ++      G+ SV NL  +I   +  SL
Sbjct: 454 ISQLFAEN----LIKDVADIYKLTYEQLIQLERM------GEKSVNNLIQAIENSKGNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVGA+ A++LA+ +   +   +   + +            +  +G+ +A 
Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQEFGHMEALEKASRDNLTA----------INEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           +IV F+        +  L            K VS+E        K +V TG L+ + R++
Sbjct: 554 SIVSFFDQEEAHELIAELKAAGVNMAYNGPKPVSAENSDSFFAGKTVVLTGKLEIMSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E +  LG  VS  +S+KTD++I G+  GSKL KAQ+LGV++ NEE+ +  L +
Sbjct: 614 AKEKIEALGGKVSGSVSKKTDVVIAGEEAGSKLTKAQELGVEVWNEERLVEELNK 668


>gi|229009789|ref|ZP_04167009.1| DNA ligase [Bacillus mycoides DSM 2048]
 gi|228751407|gb|EEM01213.1| DNA ligase [Bacillus mycoides DSM 2048]
          Length = 669

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 IQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLELER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELK----------TINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKNIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|319762938|ref|YP_004126875.1| DNA ligase, nad-dependent [Alicycliphilus denitrificans BC]
 gi|330825018|ref|YP_004388321.1| DNA ligase [Alicycliphilus denitrificans K601]
 gi|317117499|gb|ADU99987.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans BC]
 gi|329310390|gb|AEB84805.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans K601]
          Length = 717

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/736 (34%), Positives = 385/736 (52%), Gaps = 73/736 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +L  +++     YY   +P + D+EYD + ++  A+  A+P L     P+ P  ++ 
Sbjct: 22  KVEALRAQLNQWAHEYYVLDEPSVPDAEYDRVFQQLQALEGAYPALV---TPDSPTQRVI 78

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQK-KDDNSIFFTLEPKIDG 136
           G +   L  V H +  LS+    + E      F  RI R  +   +D  + +  EPK DG
Sbjct: 79  GAVMNGLAPVRHRVAMLSIRTETDTEASGAEAFDARIRRELKLAPEDPPVEYVAEPKFDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------------------- 177
             +++RYE G+ V AA RGDG  GEDV+  IR I  IP  L                   
Sbjct: 139 LAMSLRYEHGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLQLSAPTLGADASSLPPEGA 198

Query: 178 --------SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229
                       P ++EVRGEVY+ + DF  LN+     G K + NPRNAA+G +R+L+ 
Sbjct: 199 RFALGRPGGETAPPVLEVRGEVYMRRADFEQLNERQREKGDKTFVNPRNAAAGAVRQLDS 258

Query: 230 TDIT-RYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287
                R L+FF +GLG+          Y +LQ+++  GFPV   VR A    G+++++ +
Sbjct: 259 GIAAQRPLSFFAYGLGEVEGGPEFATHYALLQRLKAWGFPVAAQVRIALGAPGLIAFHQQ 318

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
           + + R  LPYDIDG+VYKV+  +LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+G
Sbjct: 319 IGAERDQLPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMMTRVEGIDVQVG 378

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG LTPVARL PV +GG  +TNATLHN   ++            + +RVGD+V+V+RAG
Sbjct: 379 RTGKLTPVARLAPVFVGGVTVTNATLHNLFELRR-----------KRVRVGDQVIVRRAG 427

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           +VIP+VV ++   R      F  P  CPIC S VVR+           HRC+GGL C AQ
Sbjct: 428 DVIPEVVGVVPAPRASYVPNFRMPRQCPICASTVVREPGE------VNHRCSGGLFCPAQ 481

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
           + + + HF  R A +IEGLG++ +D           IR   D+F L         ++   
Sbjct: 482 RKQAVLHFAQRRAMDIEGLGEKLVDQLVD----GHVIRTLPDLFRLDLPTLAGLDRMA-- 535

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
               + S  N+ D++ K +  +L RF+F LGIRHVG   A+ LA+++         ++ I
Sbjct: 536 ----EKSAQNVLDALQKSKQTTLPRFLFGLGIRHVGEATAKDLARHFG-------ALDAI 584

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSE 646
           +    D    L++V  VG ++A++I  F+  P N   V       V+   G      +  
Sbjct: 585 MDAGVD---QLLQVNDVGPVVAESIHTFFAQPHNREVVGQLRECGVAWEEGEPTAGATLP 641

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +V TGTL  + R +A++ +   GA V+  +S+KT  ++ G   GSKLEKAQ LG+
Sbjct: 642 LAGKTIVLTGTLPTLSRDEAKDMLEAAGAKVAGSVSKKTHYVVAGAEAGSKLEKAQALGI 701

Query: 707 KIMNEEQFLFLLQQYN 722
            +++E+    LL+   
Sbjct: 702 PVLDEDGLRALLRGEG 717


>gi|85708859|ref|ZP_01039925.1| DNA ligase [Erythrobacter sp. NAP1]
 gi|85690393|gb|EAQ30396.1| DNA ligase [Erythrobacter sp. NAP1]
          Length = 698

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/717 (37%), Positives = 403/717 (56%), Gaps = 33/717 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+  +S   A  EL  L ++I++HD  Y+    P I D EYDAL RR   +  AFP L R
Sbjct: 13  PVSQMSEADAANELMRLAKQIAHHDRLYHADDDPEISDQEYDALVRRNRELEEAFPQLVR 72

Query: 68  SEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               + P  ++G  +  S L KVTH +  +SL+  +N E++  +  RI R+     D  +
Sbjct: 73  E---DSPSKRVGHAVAASPLSKVTHEVRMMSLDNAFNREEVEDWTARIRRYLNLDADEEV 129

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T E KIDG   ++RYE GK + AA RGDG  GEDV+  +  I  IP+ L   +PE+ E
Sbjct: 130 AITAEDKIDGLSCSLRYENGKLMRAATRGDGQVGEDVTPNVGYISDIPQELPDGVPEVFE 189

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S+ DF ALN      G K +ANPRNAA+G LR+ + +    R L F+ +G G 
Sbjct: 190 VRGEVYMSRADFAALNTAQEEAGGKLFANPRNAAAGSLRQKDASVTAKRPLKFWAYGWGA 249

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S++  + Q +M++ +   GFP++  + +  +   ++++Y E+   R  L Y+IDG+VYK
Sbjct: 250 ASDVPCESQNDMMRMIESWGFPLSPFLTRTMSVDEMIAHYEEIGRQRPDLGYEIDGVVYK 309

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    Q++LG  A++PRW ++HKF  ++A T L  IDIQ+GRTG LTPV RL PV +GG
Sbjct: 310 VDRLDWQQRLGFVAKAPRWALAHKFPAEKAQTTLEAIDIQVGRTGKLTPVGRLAPVLVGG 369

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +TN TLHN D I+ L            +R GDR++++RAG+VIP+VV+ +   R  + 
Sbjct: 370 VTVTNVTLHNRDEIERL-----------GVRPGDRIVIQRAGDVIPQVVENLT--RDEER 416

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF FP  CP C S  V +            RCTGGL C AQ+ +RL+HFVSR A +I+G
Sbjct: 417 EPFVFPDHCPECDSEAVAEEGE------VDVRCTGGLICPAQRTQRLEHFVSRKALDIDG 470

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
            G + +  FF        +  PADIF L+ R++        + G+ D SV NL  S+  R
Sbjct: 471 FGSKTIAQFF----ALGWLESPADIFRLKDRREDILA----LEGWQDKSVDNLLASVENR 522

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     R +F LGIRHVG   AR L K+               A + D    L  +  +G
Sbjct: 523 REPDAARLLFGLGIRHVGEVTARDLLKHVHELPALRTIAEKARAGDEDAASELTAIDGIG 582

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             + +A+ +F+  P N+   E +L EV+P     E  + S +  K +VFTG L+ + R +
Sbjct: 583 PSVVEALGDFFHEPHNVAVWEDILSEVTPPRYEVET-LDSPVAGKTVVFTGKLETMSRDE 641

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+    +LGA  +  +S KTD+++ G   GSKL+KA+QLG+++++E  +  ++ +  
Sbjct: 642 AKAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKKAEQLGIEVVDEAGWAEIVAKAG 698


>gi|167624496|ref|YP_001674790.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4]
 gi|190359286|sp|B0TKB2|DNLJ_SHEHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167354518|gb|ABZ77131.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4]
          Length = 667

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 386/711 (54%), Gaps = 51/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  + E++ L  E++ H+  YY    P I DSEYD L  R  A+    P    +   + 
Sbjct: 1   MQAIQTEIAQLTAELNQHNYRYYVDDSPSIPDSEYDRLLNRLKALETEHPQFCLA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE      ++ H  P LSL+ +++ ++   F  RI          SI +  EPK
Sbjct: 58  PTQRVGGEALAKFEQIQHLKPMLSLDNVFDEQEFTAFNQRITDK-----TGSISYCCEPK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G F  AA RGDG +GE+++  +R I +IP  L   N P ++EVRGEV 
Sbjct: 113 LDGLAVSITYRDGVFERAATRGDGQTGENITENVRTIKSIPLRLRGDNFPLLVEVRGEVI 172

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-- 249
           +    F ALN+   A G K + NPRNAA+G LR+L+     +R L F+ + LG       
Sbjct: 173 MPHKAFDALNERARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESW 232

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A   Y  L+++R  G PV+  V+  ++   ++ YYN+++  RS+L ++IDG+V KV++
Sbjct: 233 ELADSHYGQLEQLRSWGVPVSQEVKVCDSVAQVIEYYNDIQQRRSSLEFEIDGVVIKVNQ 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q  LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  +
Sbjct: 293 IAHQLSLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            ++VGD ++++RAG+VIP++V ++  +R  DA+  
Sbjct: 353 SNATLHNADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAVVAEKRPDDAKEI 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           SFP+ CP+C S V R          A  RCTGGL C AQ+ E +KHF SR A +I+G+G 
Sbjct: 402 SFPARCPVCDSEVERVEGE------AVARCTGGLFCEAQRKEAIKHFASRKALDIDGMGD 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     ++ PAD+F L     T   ++      G  S T L  +I+  +  
Sbjct: 456 KVVEQLIDKE----LVQSPADLFKLTASAMTMLERM------GMKSATKLVAAIDVAKQT 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR VG   A +LA Y+ +            A    +  + I+V  VG I+
Sbjct: 506 TFARFLYALGIREVGEATAANLAAYFKTLD----------ALKAANEETFIKVDDVGTIV 555

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667
           A  +  F   P N+  ++ L++         E       ++ +  V TGTL ++ R+ A+
Sbjct: 556 AAHLAHFLAQPHNLEVIDKLIEAGVHWPAIEEVAEEDLSLKGQTWVLTGTLTQLNRNDAK 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+ TD ++ G   GSKL KAQ+LGVK+++EE  + +L
Sbjct: 616 AKLQLLGAKVAGSVSKNTDCLVAGAAAGSKLAKAQELGVKVIDEEALIAIL 666


>gi|264678823|ref|YP_003278730.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
 gi|262209336|gb|ACY33434.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
          Length = 708

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/729 (34%), Positives = 388/729 (53%), Gaps = 52/729 (7%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           ++    I A   E    ++++L  ++      YY    P + D EYD + ++ +A+  A+
Sbjct: 15  QKPSTAINAGVPESVTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAY 74

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK--FITRIYRFWQK 120
           P L     P+ P  ++ G +   L  V H++P LS++   + E      F  R+ +    
Sbjct: 75  PALV---TPDSPTQRVIGAVLDGLTPVRHAVPMLSIQTETDNEATGAIAFDQRVRKELGL 131

Query: 121 KDDNS-IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-- 177
            +  + I +  EPK DG  + +RYE G+ V A  RGDG  GEDV+  IR I  IP  L  
Sbjct: 132 DESAAAIEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLTLSA 191

Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
             ++P ++EVRGEV+++K D   LN    A G K +ANPRNAA+G +R+L+      R L
Sbjct: 192 GRDVPPVVEVRGEVHMAKADLDKLNARQQAAGAKTFANPRNAAAGSVRQLDSNIAAQRPL 251

Query: 237 NFFVHGLGKT-----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           +FF +GLG+              Y MLQ ++  GFPV   V  A     +V+++  + + 
Sbjct: 252 SFFAYGLGEITPPQQGGPDFGTHYAMLQTLKSWGFPVAPQVSIALGASELVAFHERIGAE 311

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R+ LPY+IDG+VYKV+  +LQ+QLG ++R PRW ++HK+  ++  T +  ID+Q+GRTG 
Sbjct: 312 RANLPYEIDGVVYKVNSLALQRQLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGK 371

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           LTPVARL PV +GG ++TNATL N   I+            + +RVGD+V+V+RAG+VIP
Sbjct: 372 LTPVARLAPVQVGGVVVTNATLSNLFDIRK-----------KGVRVGDQVIVRRAGDVIP 420

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +  ER      F  P  CPIC S VVR+         A HRCTGGL C AQ+ E 
Sbjct: 421 EVVGRVPGERPAYVPNFRMPKTCPICGSEVVREKGE------ANHRCTGGLFCGAQRKEA 474

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           + HF  R A +IEGLG + +D    ++     +R+  D++ L        + +  +    
Sbjct: 475 ILHFAHRRAMDIEGLGDKLVDQLVDAQ----VVRVLPDLYRL------GLSSLAALDRMA 524

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  N+  ++ K ++ +L+RF+F LGIR+VG   AR LAK++                 
Sbjct: 525 EKSAQNVLAALEKSKSTTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDA-------- 576

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENK 650
                 L++V  VG ++A +I  F+  P N   VE L    V    G   +     +   
Sbjct: 577 --SVEELLQVKDVGPVVADSIHTFFAQPHNREVVEQLRACGVHWEEGEPAEKAPQILAGL 634

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TGTL  + R  A++ +   GA VS  +S+KT  ++ G   GSKL KA++LGV +++
Sbjct: 635 TVVLTGTLPTLGRDAAKDMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLD 694

Query: 711 EEQFLFLLQ 719
           E   L LL+
Sbjct: 695 EAGMLALLR 703


>gi|126649600|ref|ZP_01721841.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
 gi|126593925|gb|EAZ87848.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
          Length = 667

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/715 (33%), Positives = 387/715 (54%), Gaps = 56/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  + ++ L + +  +   YY   KP++ DS YD L     A+  A P L     P+ 
Sbjct: 1   MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLHELIALEEANPSLIF---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KVTH  P LSL   +N  DL++F  ++ +           +  E K
Sbjct: 58  PTQRVGGTVVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKVRQAIGDH----FSYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+++YE G FV  A RGDG  GE+++A ++ I  IP  L    P  IEVRGE Y+
Sbjct: 114 IDGLAISLKYENGVFVQGATRGDGVVGEEITANLKTIHAIPLRLKE--PITIEVRGEAYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FA 251
            K  F  LN +    G + +ANPRNAA+G LR+L+P     R L+ F++ +G   E+   
Sbjct: 172 PKKSFEKLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G  EML  +  LGFP N   ++ +T   ++++       R  L Y+IDG+V KVD ++ 
Sbjct: 232 DGHAEMLDYLEDLGFPSNKERQRCSTIEEVMAFIEHWTEHRPHLAYEIDGIVIKVDRYAQ 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  A+SPRW I++KF  ++  T LLDID+ +GRTG++TP A L PV + G  +  A
Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +DIR+GD V++++AG++IP+VV +++ +R  ++ PF  P
Sbjct: 352 SLHNEDLIR-----------EKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPENSVPFEMP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S ++R           A RC    AC AQ  E +K+FVSR+A NI+GLG + +
Sbjct: 401 QNCPVCDSELIRIEGE------VALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +    A  I   +D++ L   Q     ++      G+ S TNL ++I   +  S+E
Sbjct: 454 EQLLR----ADLIHDVSDLYHLTIEQLVELERM------GEKSATNLVNAIQASKENSME 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  LGIRHVG + A+ +++ + S +      +            L+ +  +GD +A +
Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEQFGSMEAVMAATDE----------QLVAIYEIGDKMASS 553

Query: 612 IVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +VE++ N      +E L +                  +    K +V TG L+++ R++A+
Sbjct: 554 LVEYFSNDDAGAVIERLAEVGVNMTFKGKKVEVVVGDNPFAGKTIVLTGKLEQLTRNEAK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             + +LG  V+  +S+KTD++I G++ GSKL KA+QLG+++ NEE    L++Q N
Sbjct: 614 AKIEELGGTVTGSVSKKTDLVIAGEDAGSKLAKAEQLGIEVWNEE---NLIEQLN 665


>gi|145298235|ref|YP_001141076.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166215387|sp|A4SKA6|DNLJ_AERS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|142851007|gb|ABO89328.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 664

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/708 (34%), Positives = 386/708 (54%), Gaps = 47/708 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +       L   ++ +   YY    P + D+EYD L R   AI    P+L  S     
Sbjct: 1   MSETLSRHRQLCDLLTEYGHQYYVLDNPTVPDAEYDRLMRELIAIESEHPELKTSA---S 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+   +  +V H IP LSL+ +++ E+L+ F  R+    +++   S  F  EPK
Sbjct: 58  PSVRVGGQPLTAFRQVRHEIPMLSLDNVFSSEELQAFEQRMKDRLKREI--SFTFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ Y  G+ V AA RGDG +GE+++  +R I  IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYVDGQLVQAATRGDGATGEEITENVRTIKAIPLSLRGSDWPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + K  F A+N + +A G K + NPRNAA+G LR+L+     +R LNF+ +G+G   +   
Sbjct: 176 MPKAGFEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLNFYAYGVGVGGDQLG 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +  L +++  G P++  V+      G  ++++++ + R  L Y+IDG+VYKVD   L
Sbjct: 236 DSHFGRLCQLKAWGLPMSPEVKLKEGAAGCQAFHDDILARRGELAYEIDGVVYKVDAIPL 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW  +HKF  ++  T L +++ Q+GRTG +TPVA+L+PV +GG  I+NA
Sbjct: 296 QEELGFVARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTISNA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + +GD V+V+RAG+VIP++V ++  +R  DA+   FP
Sbjct: 356 TLHNADEIERL-----------GVMIGDTVIVRRAGDVIPQIVAVVEAQRPVDAREILFP 404

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S + R             RC+GGL C AQ+ E +KHF +R A +++GLG + +
Sbjct: 405 TQCPVCGSALERLEGE------VVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIV 458

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           ++ PAD+F+L   Q     ++         S  NL  +I+  R+ +L 
Sbjct: 459 EQLVDK----GLVKTPADLFSLNAIQLAGLERMGQ------KSALNLVAAIDAARSTTLP 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+F+LGIR VG   A +LA ++L+            A        L+ V  VGDI+A+ 
Sbjct: 509 RFLFALGIREVGEATALNLANHFLTLD----------ALRAASVEQLLEVADVGDIVAKH 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +  F + P NI  + A +          ++        K  V TGTL  + R+ A+  + 
Sbjct: 559 VYYFLRQPHNIEVLAAGIHW---PAIEKKEASEQPFAGKTFVLTGTLNLLSRNDAKAALQ 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S KTD+++ G+  GSKL KAQ+LG+ I  EEQ    LQ
Sbjct: 616 ALGAKVAGSVSAKTDVLVAGEAAGSKLAKAQELGITIWTEEQLQAALQ 663


>gi|229055132|ref|ZP_04195560.1| DNA ligase [Bacillus cereus AH603]
 gi|228721208|gb|EEL72737.1| DNA ligase [Bacillus cereus AH603]
          Length = 669

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEITKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPYRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 IQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQLLELER------FGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELK----------TINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|331005395|ref|ZP_08328777.1| DNA ligase [gamma proteobacterium IMCC1989]
 gi|330420789|gb|EGG95073.1| DNA ligase [gamma proteobacterium IMCC1989]
          Length = 707

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/718 (35%), Positives = 397/718 (55%), Gaps = 45/718 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SI Q  ++L+ L ++I ++   YY    P I D+EYD L      +    P    S   +
Sbjct: 30  SITQLDQQLNELREKIHHYSYQYYALDNPTIPDAEYDRLFLELQTLEKENPSYVTS---D 86

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTL 130
            P  ++G +      +VTH +P LSL+  ++ EDLR+F  R+       D   N I +  
Sbjct: 87  SPTQRVGAQPLSVFSQVTHRLPMLSLDNAFSAEDLREFHRRVTERLASLDITVNEIEYAC 146

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRG 189
           EPK+DG  +++ Y+KG  V  A RGDG +GED++  +R I +IP  L   N P+ +EVRG
Sbjct: 147 EPKLDGIAVSLVYQKGILVQGATRGDGKTGEDITQNVRTIASIPLRLQGDNYPDDLEVRG 206

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E+Y+ K  F  LN    A   K +ANPRNAA+G LR+L+      R L    + +G    
Sbjct: 207 EIYLPKAGFEKLNKIADAREEKRFANPRNAAAGSLRQLDSRITAQRPLEMCAYSVGVVDG 266

Query: 249 IFAKG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   ++L  +   GF +N  +           Y++++   R+ LPYDIDG+V+KVD
Sbjct: 267 GQVPTKHSDILYALSAWGFRINQEMASVKGIEACCDYFDQLSKKRNALPYDIDGIVFKVD 326

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQKQLG  +R+PRW I+ KF  ++  T LLD++ Q+GRTG +TPVARL+PV +GG  
Sbjct: 327 SIELQKQLGFVSRAPRWAIAQKFPAQEELTELLDVEFQVGRTGAITPVARLKPVFVGGVT 386

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D ++ L            +++GDRV+++RAG+VIP++V  ++++R   A+ 
Sbjct: 387 VSNATLHNSDEVERL-----------GVKIGDRVIIRRAGDVIPQIVSAVIDQRPDHARD 435

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FPS CP+C S  VR          A  RC+GGL C AQ  + +KH+VSR A +++GLG
Sbjct: 436 IIFPSSCPVCTSPTVRVEGE------ATIRCSGGLVCPAQIKQAIKHYVSRKAMDVDGLG 489

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++   +       I   AD++ LQ  Q        N+   G+ S +N+  ++ + +N
Sbjct: 490 DKLVEQLVELGH----ITSVADLYDLQVEQLA------NMERMGEKSASNVIHALEQSKN 539

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +  RFI++LG+R VG   AR+LA+Y+        +I+ ++    +D     RV  VG +
Sbjct: 540 TTFARFIYALGVREVGEATARNLAQYFG-------DISRLLTATEEDLQ---RVNDVGPV 589

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +AQ IV F    +N   +  L ++        +++    + +   V TGTL+++ R +A+
Sbjct: 590 VAQFIVAFLSQQKNKEVIAKLQEKGVHWEVIEQQDNPQPLLDTVYVLTGTLEQLTRDEAK 649

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            ++ QLGA V+  +S+KT  ++ G+N GSKL KA+ LGV I+ E+  + LL +Y  TL
Sbjct: 650 AHLQQLGATVTGSVSKKTHFLVAGENAGSKLTKAESLGVNILGEQDLINLLNEYGITL 707


>gi|77165170|ref|YP_343695.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707]
 gi|254433594|ref|ZP_05047102.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
 gi|123730661|sp|Q3JAI1|DNLJ_NITOC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76883484|gb|ABA58165.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707]
 gi|207089927|gb|EDZ67198.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
          Length = 675

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/712 (35%), Positives = 391/712 (54%), Gaps = 47/712 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +   A++ + +L++ I+ +D  YY  + P++ DSEYD L R   A+   +P+L      +
Sbjct: 3   APAPAKERIQALKELINNYDYAYYVVNNPLVPDSEYDRLIRELQALEENYPELITL---D 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G +   SL ++ H IP LSL   ++  +L  F  R+           + +  EP
Sbjct: 60  SPTQRVGAKPVKSLGEIKHEIPMLSLNNAFHEGELADFHRRVKTRLG---IERVDYAAEP 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           K+DG  +++ Y+ G  V  A RGDG +GED++  IR IPT+   L    IP ++EVRGEV
Sbjct: 117 KLDGLAVSLLYQDGVLVQGATRGDGITGEDITHNIRTIPTVSLRLRGEKIPSLLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-I 249
           Y+ +  F   N E IA G KP+ NPRNAA+G LR+L+P     R L  F +G+G+    I
Sbjct: 177 YMPRQGFEQFNREQIAKGEKPFVNPRNAAAGSLRQLDPRITANRPLALFCYGVGQVEGGI 236

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E+L +++  G  +           G   YY  +  +R  LPY+IDG+V+KVD  
Sbjct: 237 LPDRHSEILFQLKQWGLRILPYSEVVEELAGCEKYYQHLLDLRDKLPYEIDGVVFKVDYL 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+ LG  AR+PRW +++KF  ++  T++LDI++Q+GRTG LTPVARL+PV +GG  ++
Sbjct: 297 DQQQILGSLARAPRWALAYKFPAQEELTQILDIEVQVGRTGALTPVARLQPVFVGGVTVS 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNE  I+            +DIR+GD V V+RAG+VIP++V +I+  R PD++PF 
Sbjct: 357 KATLHNEGEIQR-----------KDIRIGDTVYVRRAGDVIPEIVKVIMERRLPDSRPFQ 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C S +V++      +  A  RC+GGL C AQ+ E +KHF  R A +I GLG +
Sbjct: 406 MPRQCPVCGSEIVKE------EGGAVARCSGGLYCPAQRKEAIKHFAGRRAMDINGLGDK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   K       ++  AD++ L + Q     ++         S TNL ++I + ++ +
Sbjct: 460 LVEQLTKQ----GLLKDVADLYGLTKEQLAGLERMGQ------KSATNLINAIQQSKHTT 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+++LGIR VG   A+ LAK + S +  A      +           +V  +G I+A
Sbjct: 510 LPRFLYALGIREVGEATAQVLAKEFGSLEALASVSEERLQ----------QVTDIGPIVA 559

Query: 610 QAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             I  F++ P N   ++ L K  V       +  +   +  +  V TGTL+ + R +A+E
Sbjct: 560 AHIAAFFRQPHNRQIIQGLQKAGVCWPEVEDKVQIVQPLLGRTFVLTGTLESMTREQAKE 619

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  V+  +S  TD +I+G NPGSKL KA+ LG+ I++E  F   L  
Sbjct: 620 RLQALGGKVNGSVSPHTDYLIIGANPGSKLVKARNLGITILDETYFRNFLDD 671


>gi|148360390|ref|YP_001251597.1| DNA ligase [Legionella pneumophila str. Corby]
 gi|166215817|sp|A5IFV1|DNLJ_LEGPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148282163|gb|ABQ56251.1| DNA ligase [Legionella pneumophila str. Corby]
          Length = 673

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 383/713 (53%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 1   MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H    LSL  ++  ++L+ FI R      +  +  + F  E
Sbjct: 58  DSPTQRVSGTPSDAFMPVAHKQAMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P  L + N P++IEVRGE
Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G   + 
Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 236

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DI +GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 357 SNATLHNFDEITR-----------KDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L          + N+   G+ S  NL  ++ K +  
Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   ++                  L+ +  +G + 
Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKAAT----------IEELMTLNDIGPVA 559

Query: 609 AQAIVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  IV F+    N+  ++    L    P   + + N  +    K +V TGTL  + R +A
Sbjct: 560 ASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL  + 
Sbjct: 620 KAKLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVAIIEEDEFLKWVN 672


>gi|299529801|ref|ZP_07043234.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
 gi|298722215|gb|EFI63139.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
          Length = 708

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/729 (34%), Positives = 388/729 (53%), Gaps = 52/729 (7%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           ++    I A   E    ++++L  ++      YY    P + D EYD + ++ +A+  A+
Sbjct: 15  QKPSTAINAGVPESVTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAY 74

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK--FITRIYRFWQK 120
           P L     P+ P  ++ G +   L  V H++P LS++   + E      F  R+ +    
Sbjct: 75  PALV---TPDSPTQRVIGAVLDGLTPVRHAVPMLSIQTETDNEATGAIAFDQRVRKELGL 131

Query: 121 KDDNS-IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-- 177
            +  + I +  EPK DG  + +RYE G+ V A  RGDG  GEDV+  IR I  IP  L  
Sbjct: 132 DESAAAIEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLTLSA 191

Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
             ++P ++EVRGEV+++K D   LN    A G K +ANPRNAA+G +R+L+      R L
Sbjct: 192 GRDVPPVVEVRGEVHMAKADLDKLNARQQAAGAKTFANPRNAAAGSVRQLDSNIAAQRPL 251

Query: 237 NFFVHGLGKT-----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           +FF +GLG+              Y MLQ ++  GFPV   V  A     +V+++  + + 
Sbjct: 252 SFFAYGLGEITPPEQGGPDFGTHYAMLQTLKSWGFPVAPQVSIALGASELVAFHERIGAE 311

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R+ LPY+IDG+VYKV+  +LQ+QLG ++R PRW ++HK+  ++  T +  ID+Q+GRTG 
Sbjct: 312 RANLPYEIDGVVYKVNSLALQRQLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGK 371

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           LTPVARL PV +GG ++TNATL N   I+            + +RVGD+V+V+RAG+VIP
Sbjct: 372 LTPVARLAPVQVGGVVVTNATLSNLFDIRK-----------KGVRVGDQVIVRRAGDVIP 420

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +  ER      F  P  CPIC S VVR+         A HRCTGGL C AQ+ E 
Sbjct: 421 EVVGRVPGERPAYVPNFRMPKTCPICGSEVVREKGE------ANHRCTGGLFCGAQRKEA 474

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           + HF  R A +IEGLG + +D    ++     +R+  D++ L        + +  +    
Sbjct: 475 ILHFAHRRAMDIEGLGDKLVDQLVDAQ----VVRVLPDLYRL------GLSSLAALDRMA 524

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  N+  ++ K ++ +L+RF+F LGIR+VG   AR LAK++                 
Sbjct: 525 EKSAQNVLAALEKSKSTTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDA-------- 576

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENK 650
                 L++V  VG ++A +I  F+  P N   VE L    V    G   +     +   
Sbjct: 577 --SVEELLQVKDVGPVVADSIHTFFAQPHNREVVEQLRACGVHWEEGEPAEKAPQILAGL 634

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TGTL  + R  A++ +   GA VS  +S+KT  ++ G   GSKL KA++LGV +++
Sbjct: 635 TVVLTGTLPTLGRDAAKDMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLD 694

Query: 711 EEQFLFLLQ 719
           E   L LL+
Sbjct: 695 EAGMLALLR 703


>gi|54296979|ref|YP_123348.1| DNA ligase [Legionella pneumophila str. Paris]
 gi|81370862|sp|Q5X6E6|DNLJ_LEGPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53750764|emb|CAH12171.1| DNA ligase [Legionella pneumophila str. Paris]
          Length = 673

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/713 (34%), Positives = 385/713 (53%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 1   MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H  P LSL  ++ I++L+ FI R      +  +  + F  E
Sbjct: 58  DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTIDELKAFIKRAIEKLDE-PNQQLVFACE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P  L + N P++IEVRGE
Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + + +G   + 
Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYSIGACEDY 236

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAIGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 357 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPINARKI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCIGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L          + N+   G+ S  NL  ++ K +  
Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   ++                  L+ +  +G + 
Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKSAT----------IEELMTLNDIGPVA 559

Query: 609 AQAIVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  +V F+    N+  ++    L    P   + + N  +    K +V TGTL  + R +A
Sbjct: 560 ASHVVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSAMGREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S KTD +I G   GSKL KA +LGV I+ E++FL  + 
Sbjct: 620 KAKLLALGAKVSGSVSSKTDYVIAGSEAGSKLIKATELGVAIIEEDEFLKWVN 672


>gi|301063517|ref|ZP_07204049.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
 gi|300442456|gb|EFK06689.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
          Length = 671

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/712 (35%), Positives = 399/712 (56%), Gaps = 50/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E++R+E+  L+Q+I YH+  YY    P I D++YD L +R   +    P+L     P+ 
Sbjct: 1   MEKSRQEIDELKQKIEYHNHRYYVLDDPEIPDADYDRLFQRLLELETKHPEL---RSPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GGE      +V H  P LSLE  ++ + +  F  R+ +F    DD  + +T+EPK
Sbjct: 58  PTRKVGGETKSGFSRVIHRSPMLSLENCFDPQQILDFDKRVRKFLG--DDAPVQYTVEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----SLNIPEIIEVR 188
           IDG  + + Y++G+   A+ RGDG  GEDV+  I+ I  +P  L     SL IP+++EVR
Sbjct: 116 IDGLAVELVYKEGRLSVASTRGDGRVGEDVTRNIKTILNVPLKLVTRKQSLPIPDLLEVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GEVY+    FL LN+   A     +ANPRNAA+G LR+L+     R  L+ F +G+G   
Sbjct: 176 GEVYMDVAAFLKLNEHRAARNESLFANPRNAAAGSLRQLDSRITARRRLDIFCYGVGNAE 235

Query: 248 EIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +  K   E++  ++  G  VN   +   +T   +VS    ++  R   PY+IDG V KV
Sbjct: 236 GLSFKTHLEVMMALQHWGLRVNRPHITICDTPDAVVSGCRHIEETRGLFPYEIDGAVIKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +   LQ +LG ++RSPRW +++KFA  Q  T +L I +Q+GRTG LTPVA+L PV +GG 
Sbjct: 296 NRLDLQFRLGMKSRSPRWAMAYKFAPTQEMTTVLGIHVQVGRTGALTPVAQLAPVELGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++ ATLHN++ I             +DIR GD+V+V+RAG+VIP+VV  + ++R  + +
Sbjct: 356 LVSRATLHNQEEIDR-----------KDIREGDQVIVQRAGDVIPEVVKTVFSKRTGNEK 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P  CP C + +++    K+G++VA  RC   + C AQ    ++HFVS+   +I+GL
Sbjct: 405 KFLMPEACPACGTAIIK----KSGEVVA--RCPN-VNCPAQVRGSIRHFVSKGGMDIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++           ++  AD++ L R        I+      + S  NL  +I K +
Sbjct: 458 GEKLVNKLLDK----GLVKDEADLYELTRADLLGLDNIK------EKSAANLLGAIEKSK 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SL RFI++LGIRHVG   A  L++ + + ++ +      ++           +  VG 
Sbjct: 508 APSLGRFIYALGIRHVGEFTAALLSERFGNIESLSNAGLEALSA----------IDGVGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            IA+++  ++ +P+N   +E L K     +    K   + +  K  V TGTL  ++R +A
Sbjct: 558 QIAESVFNYFADPQNRALLERLFKAGVTPVSTRLKPADTPVAGKTFVLTGTLASVKRSEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +E +TQ G    + +SR TD ++ GD PGSKL+KA++L V I+NE++FL LL
Sbjct: 618 KEMITQKGGKAGSSVSRNTDYLVAGDEPGSKLQKARELDVAILNEKEFLDLL 669


>gi|254448715|ref|ZP_05062173.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
 gi|198261723|gb|EDY86010.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
          Length = 673

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/707 (34%), Positives = 375/707 (53%), Gaps = 46/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ + SL +++  H   YY   +P I D+EYD L R   ++   +P+   S   + P  
Sbjct: 7   IQQHIDSLREQLHQHAHAYYVLDEPSIPDAEYDRLFRELQSLEAQYPE---SHSDDSPTQ 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G     +   V H +P LSL  +++ ++L  F  R+         + + +  EPK+DG
Sbjct: 64  RVGAAPLDAFVSVEHEVPMLSLGNVFSDDELVAFDQRLRERLDYP--SELEYAAEPKLDG 121

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--LNIPEIIEVRGEVYIS 194
             I++ YE G  V  A RGDG  GEDV+  I+ I +IP  L    + P+ +EVRGEVY+ 
Sbjct: 122 LAISLLYEDGVLVRGATRGDGSVGEDVTQNIKTIHSIPLRLPKRGDWPKRLEVRGEVYMP 181

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           K  F A+N +    G K +ANPRNAA+G LR+L+      R L+ + + +G         
Sbjct: 182 KAGFEAMNAKAREQGDKVFANPRNAAAGSLRQLDSRIAASRPLDMYCYSVGVFEGELPAT 241

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  +   GF +           G   YY ++   R TLPY+IDG+VYKV+   LQ 
Sbjct: 242 HSETLAMLGRWGFRICPESAVVTGASGCAEYYQQIGRARDTLPYEIDGVVYKVNSLKLQG 301

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  AR+PRW  +HKF   +  T L D++ Q+GRTG LTPVARLEPVN+ G +++NATL
Sbjct: 302 DLGFVARAPRWATAHKFPPSEELTVLQDVEFQVGRTGALTPVARLEPVNVAGVVVSNATL 361

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D +K            +D+R+GD V+V+RAG+VIP+VV  ++  R  +A     PS 
Sbjct: 362 HNMDEVKR-----------KDVRIGDTVIVRRAGDVIPEVVKSVLERRPKEAPAIVMPSH 410

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V+R          A  RC+GGL CSAQ+ E +KHF SR A +I+G+G + +D 
Sbjct: 411 CPVCGSDVIRPEGE------AVARCSGGLYCSAQRREAIKHFASRKALDIDGVGDKLIDQ 464

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     I    D+F L   Q  S  ++      G+ S T   +++   +  +L +F
Sbjct: 465 LVDGE----LIDHVDDLFHLTVEQLASLERM------GEKSATKAIEALENAKRTTLPKF 514

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG   AR+LA ++   +   Q   + +          + V  VG I+A  + 
Sbjct: 515 LFALGIREVGEVTARNLAMHFGDLEPIMQASEDDL----------LAVADVGPIVAAHVK 564

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F++ P NI  ++ LL+           +   + ++    V TGT   ++R +A++ +  
Sbjct: 565 SFFEQPHNIEVIDKLLEAGFVWEPIEVAEQKEAVLDGHTYVLTGTFTAMKRDEAKQQLLA 624

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LGA VS  +S+KT  +  GD+PGSK++KA +L V +  EE  L LL+
Sbjct: 625 LGAKVSGSVSKKTTAVFAGDSPGSKVDKAAELEVPVKTEEDLLELLK 671


>gi|296106543|ref|YP_003618243.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
 gi|295648444|gb|ADG24291.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
          Length = 673

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 383/713 (53%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 1   MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H    LSL  ++  ++L+ FI R      +  +  + F  E
Sbjct: 58  DSPTQRVSGTPSDAFMPVAHKQAMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P  L + N P++IEVRGE
Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G   + 
Sbjct: 177 VYIPKADFEAYNARARELGEKIFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 236

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DI +GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 357 SNATLHNFDEITR-----------KDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L          + N+   G+ S  NL  ++ K +  
Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   ++                  L+ +  +G + 
Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKAAT----------IEELMTLNDIGPVA 559

Query: 609 AQAIVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  IV F+    N+  ++    L    P   + + N  +    K +V TGTL  + R +A
Sbjct: 560 ASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL  + 
Sbjct: 620 KAKLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVAIIEEDEFLKWVN 672


>gi|149203841|ref|ZP_01880810.1| DNA ligase, NAD-dependent [Roseovarius sp. TM1035]
 gi|149142958|gb|EDM31000.1| DNA ligase, NAD-dependent [Roseovarius sp. TM1035]
          Length = 717

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/711 (41%), Positives = 433/711 (60%), Gaps = 15/711 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L+  +A+ EL  L   ++  +  Y+    P I D+ YDALK R  AI   FP L R 
Sbjct: 18  VEDLTESEAQAELGRLAALLAAANRAYHTEDAPEITDAAYDALKARNAAIEARFPTLKRD 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +   +++G        KV HSI  LSL   +  ED+ +F +RI R+    DD  + +
Sbjct: 78  ---DSASDQVGAAPLDGFAKVAHSIRMLSLGNAFEPEDVAEFDSRIRRYLGLPDDAPLAY 134

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RY +G+ V AA RGDG  GE+V+A  R I  IP  L+   PEI+EVR
Sbjct: 135 TAEPKIDGLSLSLRYVQGRLVQAATRGDGEVGENVTANARTITDIPESLT-GAPEILEVR 193

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+S  DF ALN        K +ANPRNAA+G LR+L+      R L FF +  G+ S
Sbjct: 194 GEVYMSHADFAALNARQAEKSDKQFANPRNAAAGSLRQLDAKITAARPLRFFAYSWGEVS 253

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A+ Q   + +++ LGF  N      +    ++ +Y  ++  R+TL YDIDG+VYKVD
Sbjct: 254 APLAETQMGAIARLKALGFQTNPLTVLCDGVEALLEHYARIEQARATLGYDIDGVVYKVD 313

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG +
Sbjct: 314 DLGLQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVV 373

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHNEDYI G D+ G+V+RGG+DIRVGD V V RAG+VIPKV D+ +++R   A P
Sbjct: 374 VSNATLHNEDYIAGRDSKGEVIRGGKDIRVGDWVQVYRAGDVIPKVADVDLSKRAEGATP 433

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP+ CP C S  VR+      +  A  RC GGL C AQ +E+LKHFVSR AF+IEGLG
Sbjct: 434 YVFPATCPECGSDAVRE------EGDAVRRCVGGLICPAQAVEKLKHFVSRAAFDIEGLG 487

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +Q++ F++       I+ PADIF LQ R  +   +++N  G+G+ S  NL+++I ++R 
Sbjct: 488 AKQVEQFYRD----GWIKEPADIFLLQERYGSGLQQLKNREGWGEKSAKNLFEAIEEKRK 543

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           I   R +F+LGIRHVG + +  +A+ Y ++  F   ++    +   +W  L+ +  VG +
Sbjct: 544 IPFGRLLFALGIRHVGEQASTLIARNYGTWDEFIAAMDGAKDYEGPEWERLLGIDGVGTV 603

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A+A+V  +  P    +++ L + ++       +   S +  K +VFTG+L+K+ R +A+
Sbjct: 604 MARALVGAFAEPHERGSIDRLTEYLTVQEAARPRTDGSPVAGKTVVFTGSLEKMTRAEAK 663

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
                LGA V+  +S KTD+++ G   GSK +KAQ LG++ ++E+ +L L+
Sbjct: 664 ARAEGLGAKVAGSVSAKTDLLVAGPGAGSKAKKAQDLGIETIDEDGWLTLI 714


>gi|217970592|ref|YP_002355826.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
 gi|217507919|gb|ACK54930.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
          Length = 693

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/703 (37%), Positives = 384/703 (54%), Gaps = 49/703 (6%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           HD  YY    P I D+EYD L R   AI  A+P L      + P  ++GG+       V 
Sbjct: 30  HDHAYYVLDAPTIPDAEYDRLFRELQAIERAYPAL---RSADSPTQRVGGKALAQFATVR 86

Query: 91  HSIPTLSLEKIWNIEDLRKF--ITRIYRFWQKK-DDNSIFFTLEPKIDGTMITIRYEKGK 147
           H +P LS+    + E    F    R+ R      DD ++ +  E K DG  I++RYE G 
Sbjct: 87  HRVPMLSISTETDTEASGAFAFDARVRRALGLDEDDAAVAYAAELKFDGLAISLRYEDGV 146

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V AA RGDG +GEDV++ +R +  IP  L    P ++EVRGE+Y+ ++DF  LN     
Sbjct: 147 LVQAATRGDGETGEDVTSNVRTVKAIPLRLLGEAPPVLEVRGEIYLRRDDFERLNARQAE 206

Query: 208 VGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLG 265
            G K + NPRNAA+G +R+L+P    R  L+F+ +GLG+ +       Q E+L  +   G
Sbjct: 207 AGEKIFVNPRNAAAGSIRQLDPGIAARRPLSFYAYGLGEVAGWTLPATQTEVLDALAAFG 266

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            PV     Q     G+ +++  + ++R TLP+DIDG+VYKVD  +LQ+QLG   R PRW 
Sbjct: 267 LPVCGHRAQVRGAEGLAAFHARIGALRDTLPFDIDGVVYKVDALALQQQLGFVTREPRWA 326

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           ++HK+  ++A T L DI++Q+GRTG LTPVARLEPV +GG  +TNATLHN+D I      
Sbjct: 327 VAHKYPAQEAVTLLRDIEVQVGRTGALTPVARLEPVFVGGVTVTNATLHNQDEIDR---- 382

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS---FPSFCPICQSRVV 442
                  +D+R+GD V+V+RAG+VIP+VV  I+  R  +   F        CP+C S VV
Sbjct: 383 -------KDVRIGDWVIVRRAGDVIPEVVAPILERRGGELPRFVLLDRFPTCPVCGSHVV 435

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           R      G+  A  RCTGGL C AQ+ + L HF  R A +IEGLG + +D        A 
Sbjct: 436 R------GEDEAVARCTGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVD----AA 485

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            ++ P D++ L      +  ++      G+ S  NL  +I K R  +L RFIF+LGIR+V
Sbjct: 486 IVKTPVDLYRLGVLALANLERM------GEKSAQNLLMAIEKSRGTTLARFIFALGIRNV 539

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   AR LA+++              A    D  +L +VP VG I+A+ I EF+  P N 
Sbjct: 540 GEATARDLARHFGKLD----------ALIAADVDALQQVPDVGPIVAKCIAEFFAEPHNR 589

Query: 623 CAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
             +E L    V  + G  + +V+  +  K  V TGTL  + R +A+  +   G  V+  +
Sbjct: 590 EVIEQLRAAGVHWAEGEPQGSVAGALAGKTFVLTGTLPTLSRDEAKARIEARGGKVAGSV 649

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           S+KT  ++ G   GSKL+KAQ LG+ I++E+    LL + +T 
Sbjct: 650 SKKTHYVVAGAEAGSKLDKAQALGLAILDEDGLRVLLNETDTN 692


>gi|291613759|ref|YP_003523916.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
 gi|291583871|gb|ADE11529.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
          Length = 701

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/734 (34%), Positives = 392/734 (53%), Gaps = 62/734 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +   +  + L ++I+ +D  YY    P I D+EYD L R   A+    P+L  S   + P
Sbjct: 4   QDVTRRAALLRKQIAEYDYWYYVKDMPRIPDAEYDKLFRELQALEAQHPELLAS---DSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKD-DNSIFFTLE 131
             ++GG+       V H++P LS+    +I D     F  R+ R     + D  I +  E
Sbjct: 61  TQRVGGKPLDMFQPVRHAVPMLSIRTETDISDQGAIAFDARVRRELGLNENDPPIEYVCE 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + +RYE+G+ V AA RGDG +GEDV+  +R I  IP  L    P ++EVRGEV
Sbjct: 121 LKFDGLALNLRYEQGRLVQAATRGDGETGEDVTQNVRTIHQIPLSLEGMCPGVLEVRGEV 180

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGK--TSE 248
           Y+++ DF   N+     G     NPRN A+G +R+L+P    R  L FF +GLG+     
Sbjct: 181 YMARPDFERYNERQRQQGLPTLVNPRNGAAGSIRQLDPALAARRPLKFFAYGLGEKVEGW 240

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            + +    +L ++   GFPV++  R  +   G+V ++  ++++R +LP+DIDG+VYKV+ 
Sbjct: 241 DWRETHKGVLDQLEAWGFPVSHECRVVHGAQGLVEFHRRIEAMRDSLPFDIDGVVYKVNS 300

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +R PRW ++HKF  ++  TRL  I+IQ+GRTG LTPVA+LEPV +GG  +
Sbjct: 301 IALQEKLGFVSREPRWAVAHKFPAEEQVTRLNGIEIQVGRTGKLTPVAKLEPVFVGGTTV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP- 427
           +NATLHNE  I+            + I +GD V+V+RAG+VIP+VV ++   +     P 
Sbjct: 361 SNATLHNEGEIRR-----------KGIHIGDMVIVRRAGDVIPEVVGVVPTMKVEPTIPP 409

Query: 428 -----------------FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
                            F  P+ CP+C S VVR+         A  RCTGGL C+AQ+ +
Sbjct: 410 SNTINLELTAPSPTLSAFMMPTSCPVCGSHVVREEGE------ADARCTGGLFCAAQRKQ 463

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            + HF  R A +IEGLG + +D           I   +D++     +  ++  +  +   
Sbjct: 464 AILHFAGRRAMDIEGLGDKLVDQLVDENI----IHSLSDLYD---EKVLNSQTLAALDRM 516

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
            + S  N+ D++ K ++ +L RF+F+LGIRHVG   A+ LA+++   +   Q        
Sbjct: 517 AEKSAQNIVDALEKSKSTALNRFLFALGIRHVGESTAKDLARHFGKLEAIMQA------- 569

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIEN 649
              +   L+ VP VG ++AQ+IV+F+    N   V+ L             +V    +  
Sbjct: 570 ---NVEQLLAVPDVGPVVAQSIVDFFGEAHNREVVQQLRILGVHWAEHEGSSVRELPLSG 626

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K  V TGTL  + R +A+  +  LGA V+  +S+KTD ++ G   GSKL+KA++L V + 
Sbjct: 627 KTFVLTGTLANLSRDEAKSRLEALGAKVAGSVSKKTDCVVAGVEAGSKLDKARELNVPVW 686

Query: 710 NEEQFLFLLQQYNT 723
           +E+Q    L++Y  
Sbjct: 687 DEQQLFDQLKEYEK 700


>gi|257887196|ref|ZP_05666849.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733]
 gi|257823250|gb|EEV50182.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733]
          Length = 678

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/720 (33%), Positives = 393/720 (54%), Gaps = 53/720 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 4   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +  D    +  
Sbjct: 62  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRVVD----YCC 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L    P  IEVRGE
Sbjct: 117 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKE--PMNIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 175 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 355 RASLHNGDYIKL-----------KDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 404 LPTHCPVCGSELVHLDEE------VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 457 VLEQMYDKK----LVADVADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L ++ R 
Sbjct: 557 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L Q ++ 
Sbjct: 617 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAQSHSA 676


>gi|222055066|ref|YP_002537428.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32]
 gi|254781339|sp|B9M861|DNLJ_GEOSF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221564355|gb|ACM20327.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32]
          Length = 669

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/710 (34%), Positives = 381/710 (53%), Gaps = 44/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A+  +  L +EI+ H+  YY   +P I D+EYD L R    +   FPDL  +   
Sbjct: 1   MDRTAAQLRIQELHREINRHNYLYYVEDRPEITDAEYDLLLRELQQLEKEFPDLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G        +V+H +P LSLE  +N  ++R F  RI R+        I +  E
Sbjct: 58  DSPTQRVGAAPLDKFNQVSHRLPMLSLENAFNEGEMRDFDERIKRYLGLPMAKEIEYVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190
           PK+DG  + + YE+G   + + RGDG+ GEDV+  ++ + +IP  L     P ++EVRGE
Sbjct: 118 PKMDGLAVELIYEEGSLTFGSTRGDGYVGEDVTQNLKTVKSIPLRLHCSPPPSLVEVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEI 249
           VY+    F  LN +    G  P+ANPRNAA+G LR+L+P    R  L+ F +  G     
Sbjct: 178 VYLGLAPFQKLNMDREEAGLPPFANPRNAAAGSLRQLDPRITARRPLSIFCYAPGLVEGY 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q +ML  +   G PVN  +++      +++YY E+   R +LPY+IDG+V KVD F
Sbjct: 238 EFTSQSQMLATLPQWGLPVNPLIKKVAGIDAVLAYYREIGETRESLPYEIDGVVIKVDSF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+ LGE+ RSPRW I+ KF  +QA T + DI  Q+GRTG++TPVA L+PV + G +++
Sbjct: 298 DLQRDLGEKTRSPRWAIAWKFPPRQAVTVVEDIVPQVGRTGVITPVAHLKPVEVSGVMVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR GD V+V+RAG+VIP VV ++  +R   A+  +
Sbjct: 358 RATLHNWEEMEK-----------KDIRKGDTVVVERAGDVIPAVVKVMTEKRLEGAELLA 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +V+           A RC G L C AQ  E + HF SR A +IEG+G +
Sbjct: 407 VPAACPECGSEIVKIPGE------VAIRCLG-LTCPAQIRETIIHFASRHAMDIEGMGDK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   + E     ++  AD++ L ++      ++      GD    NL ++I   ++  
Sbjct: 460 YVEQLLRLE----LVKTVADLYYLTKKDFMRFERM------GDKLAENLLNAIEASKHRE 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFIF+LGIRHVG   A+ LA  + S ++  +     +          + +  VG  +A
Sbjct: 510 LSRFIFALGIRHVGEHTAKLLASAFGSVEHLEKATEEEL----------LSIREVGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q++  F++NP N   +E  +          EK +      K  VFTG L +  R  A+  
Sbjct: 560 QSVRTFFRNPANREVIER-MFAAGVRPAVEEKRLGGRFTGKTFVFTGALTRFTRDDAKNM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   G   +  +S+KTD ++ G   GSKL+KA+QLGV ++ E++FL +L+
Sbjct: 619 VENEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVNVLTEDEFLKMLE 668


>gi|257884412|ref|ZP_05664065.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501]
 gi|257898303|ref|ZP_05677956.1| NAD-dependent DNA ligase [Enterococcus faecium Com15]
 gi|257820250|gb|EEV47398.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501]
 gi|257836215|gb|EEV61289.1| NAD-dependent DNA ligase [Enterococcus faecium Com15]
          Length = 678

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/720 (33%), Positives = 393/720 (54%), Gaps = 53/720 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 4   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +  D    +  
Sbjct: 62  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRVVD----YCC 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L    P  IEVRGE
Sbjct: 117 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKE--PMNIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 175 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 355 RASLHNGDYIKL-----------KDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 404 LPTHCPVCGSELVHLDEE------VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 457 VLEQMYDKK----LVADVADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L ++ R 
Sbjct: 557 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L + ++ 
Sbjct: 617 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 676


>gi|256822391|ref|YP_003146354.1| NAD-dependent DNA ligase [Kangiella koreensis DSM 16069]
 gi|256795930|gb|ACV26586.1| DNA ligase, NAD-dependent [Kangiella koreensis DSM 16069]
          Length = 667

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/708 (35%), Positives = 399/708 (56%), Gaps = 48/708 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  K ++ L   +  ++  YY    P + D+EYD L R    I    P+L      + 
Sbjct: 1   MSELEKRVAELRVTLDNYNHQYYVLDDPSVPDAEYDRLLRELQQIESEHPELI---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G + +    +VTH +P LSL+   + ++L  F  R+       ++  I +  EPK
Sbjct: 58  PTQRVGAKPDNGFQEVTHELPMLSLDNAMSDDELVSFNKRVQDRLNTTEN--IEYVCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V  A RGDG +GE+++  +R I  IP  L     PE IE+RGEV+
Sbjct: 116 LDGLAVSLLYENGQLVRGATRGDGTTGENITLNVRTIRAIPLKLRGTETPERIEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250
           + K  F +LN+E    G K +ANPRNAA+G LR+L+P+    R L+F+ + +G  S+ F 
Sbjct: 176 MPKAVFESLNEEAREQGAKSFANPRNAAAGSLRQLDPSITAKRQLSFYAYSMGLVSDDFK 235

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A   ++ L++++  G PV++ ++      G ++Y+  +   R +L Y+IDG+V KV+  
Sbjct: 236 LANTHFDRLEQIKTFGLPVSSEIKLVKGAEGCLAYHQSISEKRDSLGYEIDGVVNKVNSI 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG  AR+PRW I+HKF  ++  T+L+ +D Q+GRTG LTPVARLEPV++GG  ++
Sbjct: 296 ELQEELGFVARAPRWAIAHKFPAQEEMTQLIGVDFQVGRTGALTPVARLEPVSVGGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D IK L           D R+GD V+++RAG+VIP+VV II+ +R  +A+   
Sbjct: 356 NATLHNMDEIKRL-----------DARIGDTVIIRRAGDVIPQVVSIILEKRPSNAEIIL 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C S V R          AA RCTGGL CSAQ+ E +KHF SR A +I+GLG +
Sbjct: 405 TPEQCPVCNSPVERTEGE------AAIRCTGGLICSAQRKEAIKHFASRKAMDIDGLGDK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++ F +       ++  +D++ ++     +  ++      G+ S  NL  ++   +N +
Sbjct: 459 LVEIFAEKGM----VQSISDLYRIKAGDIAALDRM------GEKSAENLIGALEHSKNTT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L +F++SLGIR VG   A+++A ++L+     +     +            VP VG I+A
Sbjct: 509 LPKFLYSLGIREVGEVTAKNIAHHFLTLDGIIKASQEELE----------SVPDVGPIVA 558

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQE 668
             I  F+ N  N+  +E L           +K+     ++ K  V TGTL+ I R +A+ 
Sbjct: 559 HHIRAFFDNVENLEQIEELKDLGVNWPDIKKKSDDELPLKGKTYVITGTLEGISRPEAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  LGA VS  +S KT  +I G + GSKL+KAQ+LGV++++ + FL 
Sbjct: 619 KLEALGAKVSGSVSSKTTALIAGASAGSKLKKAQELGVEVLD-QSFLD 665


>gi|293571852|ref|ZP_06682868.1| DNA ligase, NAD-dependent [Enterococcus faecium E980]
 gi|291608106|gb|EFF37412.1| DNA ligase, NAD-dependent [Enterococcus faecium E980]
          Length = 679

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/720 (33%), Positives = 393/720 (54%), Gaps = 53/720 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 5   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +  D    +  
Sbjct: 63  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRVVD----YCC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L    P  IEVRGE
Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKE--PMNIEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIKL-----------KDIRLKDTVLIYKAGDIIPEVSQVVMDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L ++ R 
Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L + ++ 
Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 677


>gi|227551668|ref|ZP_03981717.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330]
 gi|293377659|ref|ZP_06623848.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1]
 gi|227179231|gb|EEI60203.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330]
 gi|292643659|gb|EFF61780.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1]
          Length = 679

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/720 (33%), Positives = 393/720 (54%), Gaps = 53/720 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 5   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +  D    +  
Sbjct: 63  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRVVD----YCC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L    P  IEVRGE
Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKE--PMNIEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGSM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIKL-----------KDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L ++ R 
Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L + ++ 
Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 677


>gi|56460801|ref|YP_156082.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
 gi|81362279|sp|Q5QUK1|DNLJ_IDILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56179811|gb|AAV82533.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
          Length = 670

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/708 (35%), Positives = 386/708 (54%), Gaps = 46/708 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +   + +  LEQ ++ ++  YY+  +P + D+EYD L R    +    PDL  ++    P
Sbjct: 3   QSVHQRMQELEQLLNRYNQEYYENDEPSVPDAEYDRLFRELKTLETEHPDLKSAQ---SP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+GG+       V H +P LSL+  +++++   F  R+ +      + ++ F  EPK+
Sbjct: 60  TMKVGGKPLGQFRSVEHEVPMLSLDNAFSVDEFEAFSKRVEQRLDT--NQTVTFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ YE G  V  A RGDG SGED++  ++ I  +P  LS ++PE +EVRGEV + 
Sbjct: 118 DGAAVSLLYENGLLVRGATRGDGQSGEDITENVKTIRNVPLKLSGDVPERLEVRGEVVMP 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI--FA 251
              F   N++      K +ANPRNAA+G LR+L+      R L+F+ + LG  SE     
Sbjct: 178 LGAFERFNEQARQREEKVFANPRNAAAGSLRQLDSRITAKRPLHFYAYSLGLISETTQLP 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++ L +++  G PVN  ++  ++  G   YY  + + R TL YDIDG+V+KVD   L
Sbjct: 238 DSHHQRLLQLKDWGLPVNIEIKTVDSVQGCDDYYEAILARRDTLNYDIDGVVFKVDSIRL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  AR+PRW I+ KF  ++  T +  +D Q+GRTG +TPVARLEPVN+GG  ++NA
Sbjct: 298 QQDLGFVARAPRWAIARKFPAQEQLTTITGVDFQVGRTGAITPVARLEPVNVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            +R+GD V ++RAG+VIP+VV +I ++R  + +   FP
Sbjct: 358 TLHNADEIERL-----------GVRIGDCVSIRRAGDVIPQVVSVIKDKRPENTKAIEFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPICQS + R          A  RCTGGL C+AQ+ E +KHF SR A +I+GLG + +
Sbjct: 407 QHCPICQSDIERVEGE------AVARCTGGLYCAAQRKEAIKHFASRKAMDIDGLGDKIV 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   + +     I+ PAD++ L + +  +          G  S  NL ++I   +  +L 
Sbjct: 461 EQLVERD----WIKSPADLYRLSKAELATL------PRMGAKSAENLRNAIKATQETTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIR VG   A +LA ++ +            A    +   L  VP VG ++A+ 
Sbjct: 511 RFIYALGIREVGEATANALANHFKNLD----------ALIAAESEQLQEVPDVGAVVAKH 560

Query: 612 IVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           IV F+    N   V  L + +  P         S  +     V TGTL  + R +A+  +
Sbjct: 561 IVAFFHEAHNQQVVAELREFISWPEGEEASSVQSDRLSGNTYVITGTLSTMTRDEAKSAL 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             LGA V++ +S+KT  ++ G+N GSKL KAQ LG+ I++E     LL
Sbjct: 621 EALGAKVASSVSKKTTALVAGENAGSKLTKAQSLGLDILDENALAELL 668


>gi|83590843|ref|YP_430852.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073]
 gi|123739230|sp|Q2RGY0|DNLJ_MOOTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83573757|gb|ABC20309.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073]
          Length = 666

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/711 (35%), Positives = 375/711 (52%), Gaps = 47/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +  AR+ +  L + I  H+  YY   +P I D EYDAL +   A+  A+P+L     P
Sbjct: 1   MDLAAARQRVEELRRLIEEHNYRYYVLDQPSISDREYDALMQELIALEEAYPEL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +V H    LSL   +N  DL +F  R+     +     + + +E
Sbjct: 58  DSPSQRVGGAPREEFNQVRHPQVLLSLNDAFNEGDLLEFDRRVRDLAGR----PVEYVIE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + Y  G F   A RGDG  GE+V+A ++ IP +  +        + VRGEV
Sbjct: 114 AKIDGLAVALTYRDGLFTLGATRGDGQVGEEVTANLKTIPAL-PLRLRRPLPFLVVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN      G   +ANPRNAA+G LR+L+P    +R L+ FV+ +   +   
Sbjct: 173 YMPKVAFTALNAAREEAGEPLFANPRNAAAGSLRQLDPKITASRSLSLFVYQVISLTGAE 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK-SIRSTLPYDIDGLVYKVDEF 309
              Q   L  +  LGFPVN     A     ++          R++LPY+IDGLV KV++ 
Sbjct: 233 VATQAGALDFLAELGFPVNPYRVVAPDIQAVLEEVKAWTPERRASLPYEIDGLVIKVNDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +L   LG  A++PRW +++KF  +QA+ R+  I +++GRTG+LTP A L PV + G  ++
Sbjct: 293 ALHSVLGATAKAPRWAMAYKFPAEQATARVEGIILRVGRTGVLTPTAVLTPVRLAGTTVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNEDYI+            +DIR+GD V+V++AG++IP+VV +I   R    + F+
Sbjct: 353 RATLHNEDYIR-----------EKDIRIGDTVIVQKAGDIIPEVVAVIPERRTGSEEVFT 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + VVR          AAHRCTGGLAC AQ LE + HF SR A +I+GLG  
Sbjct: 402 MPERCPACGAAVVRPPGE------AAHRCTGGLACPAQVLEGIIHFASRGAMDIQGLGPA 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    +    A  I   AD++ L+        +      FG  S +NL  +I   +   
Sbjct: 456 IVAQLLE----AGLIHDAADLYYLKEEDLLKLER------FGQQSASNLLAAIAASKKQP 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER IF+LGIR+VG   AR LA ++ S    A      +            +P +G  IA
Sbjct: 506 LERLIFALGIRNVGQRAARVLADHFGSLDKLAAATVEELTA----------LPDIGPRIA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           + I EF+  PRN   +E L K        +    +  +  K  V TGTL  + R +A+E 
Sbjct: 556 ENIREFFGEPRNRAVLEKLKKAGVRLEALNAAAPAGPLTGKVFVLTGTLPGMTRQEAEEL 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +T+ G  VS+ +SRKTD ++ G+ PGSKL++A++LGV ++N +    LL+Q
Sbjct: 616 ITRAGGKVSSSVSRKTDYVVAGEKPGSKLDRARELGVPVINADGLRQLLRQ 666


>gi|257895732|ref|ZP_05675385.1| NAD-dependent DNA ligase [Enterococcus faecium Com12]
 gi|257832297|gb|EEV58718.1| NAD-dependent DNA ligase [Enterococcus faecium Com12]
          Length = 678

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/720 (33%), Positives = 393/720 (54%), Gaps = 53/720 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 4   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +  D    +  
Sbjct: 62  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRVVD----YCC 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L    P  IEVRGE
Sbjct: 117 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKE--PMNIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 175 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGSM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 355 RASLHNGDYIKL-----------KDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 404 LPTHCPVCGSELVHLDEE------VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 457 VLEQMYDKK----LVADVADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L ++ R 
Sbjct: 557 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L + ++ 
Sbjct: 617 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 676


>gi|149183793|ref|ZP_01862194.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1]
 gi|148848496|gb|EDL62745.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1]
          Length = 668

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/717 (34%), Positives = 389/717 (54%), Gaps = 56/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I+ A ++++ L   ++ ++  Y+   KP + D+EYD +     AI   FP+L     P
Sbjct: 1   MDIKSAEQKVAELHNLLNQYNYEYHVLDKPSVPDAEYDRVMNELIAIETEFPEL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    +  KV H  P LSL   +N +DLR F  ++ +        +  +  E
Sbjct: 58  DSPTQRVGGNTLEAFEKVEHRTPMLSLGNAFNEDDLRDFDRKVRQA----AGEAYSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G F   A RGDG  GED++A ++ I +IP  L +  P  +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGLFSQGATRGDGTIGEDITANLKTIKSIP--LRIPEPLTMEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  F ALN        +P+ANPRNAA+G LR+L+P     R L+ +++ +    E  
Sbjct: 172 FMPKRSFEALNKAKEEKEEEPFANPRNAAAGSLRQLDPRIAASRNLDIYLYSIADVGETG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   ++ +    ++ Y       R  LPYDIDG+V KVD   
Sbjct: 232 VVSHSEGLDLLDKLGFKTNKERKRCSNIEEVIQYVEGWVEKRPDLPYDIDGIVIKVDSLP 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  A+SPRW I++KF  ++  T L DI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 LQQELGTTAKSPRWAIAYKFPAEEVVTLLKDIELSVGRTGVVTPTAILEPVKVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DI++GD V+VK+AG++IP+VV+++   R  D Q F  
Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDYVVVKKAGDIIPEVVNVLEERRTGDEQDFHM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PEECPECGSGLVRLEKE------VALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   FK       I   ADI+ LQR Q     ++      G+ SV NL ++I   ++ SL
Sbjct: 454 ISQLFKE----GLIVDVADIYRLQREQLLQLERM------GEKSVDNLLNAIEASKSNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A++LA+ + +  N      + +            +  +GD +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKTLAQEFENIDNLKVASKDQLTA----------INEIGDKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-----SSEIENKKLVFTGTLQKIQRHK 665
           A+V +++    +  +  L      +  +  K V      S    K +V TG L+++ R++
Sbjct: 554 AVVAYFEKEEVMELIGELKTAGVNTEYKGPKPVKVDEIDSYFAGKTIVLTGKLEQLGRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A++ + +LG  V+  +S+KTD+++ G++ GSKL KAQ+L ++I +EE    L+++ N
Sbjct: 614 AKQKIEELGGKVTGSVSKKTDLLVAGEDAGSKLSKAQELQIEIWDEE---KLIEELN 667


>gi|114570616|ref|YP_757296.1| DNA ligase [Maricaulis maris MCS10]
 gi|122315591|sp|Q0AMX9|DNLJ_MARMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114341078|gb|ABI66358.1| DNA ligase, NAD-dependent [Maricaulis maris MCS10]
          Length = 701

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/717 (39%), Positives = 428/717 (59%), Gaps = 25/717 (3%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L  ++ L+  +AR E + L +EI+ HD  YYQ   P I D+ YDAL+R+ +AI   FP  
Sbjct: 4   LKDVDQLTEAEARAEHARLAREIAGHDKAYYQSDAPKISDAAYDALRRKLEAIEVRFPQF 63

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                   P  ++G   +    ++ H++P LSL   +N ED+  F+ RI RF    + + 
Sbjct: 64  IDLL---SPTQRVGAVPSGKFGEIRHAVPMLSLGNAFNDEDVADFVGRIRRFLGLAESDV 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEI 184
           +  T EPKIDG   ++RY  GK V+ A RGDG +GEDV+  +  +  IP  L   + P++
Sbjct: 121 VAVTAEPKIDGLSASLRYVGGKLVHGATRGDGQTGEDVTQNLLTLDDIPDTLPPGDWPDV 180

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +EVRGEVY+S  DF ALN+  I  G+  Y NPRNAA+G LR+++P   + R L FF +  
Sbjct: 181 VEVRGEVYMSHADFAALNERQIEAGKDAYKNPRNAAAGSLRQIDPKMTSQRPLRFFAYAW 240

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+ SE  +  Q   + +   +GFPVN+ + +  T   +++ Y ++++ R+ L YDIDG+V
Sbjct: 241 GEVSEPLSDTQMGAVARFGEMGFPVNDLMARCETVEALLAVYRDIEARRAGLGYDIDGVV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YK D    Q++LG  AR+PRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL PV +
Sbjct: 301 YKADRLDWQERLGFVARAPRWAIAHKFPAEQATTILEAIDIQVGRTGALTPVARLTPVTV 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++TNATLHN+D I+            +DIRVGD V+++RAG+VIP+VV ++  +R  
Sbjct: 361 GGVVVTNATLHNQDEIER-----------KDIRVGDTVVIQRAGDVIPQVVRVVDPDRPG 409

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + F FP+ CP+C S+ +R+ + KTGKL    RCTGGL C AQ  ERLKHFVSR AF+I
Sbjct: 410 RGEAFDFPTECPVCGSQALREHDAKTGKLDVVRRCTGGLICGAQLKERLKHFVSRKAFDI 469

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI--ENILGFGDVSVTNLYDS 541
           EGLG +Q++ F +       I  PA IFTL+ R +    K   +   GFG+ S+ NL+ S
Sbjct: 470 EGLGIKQIEAFQEE----GLITEPAHIFTLKARNEAGEIKPPLQEREGFGETSIRNLFTS 525

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I  RR I+L RF+ +LGIRHVG   +   A+ Y S+  F     N+   +      ++ +
Sbjct: 526 IEDRRTITLARFLNALGIRHVGENTSALFARTYGSWAAFHAAAANL--SDEAVRAEMLGI 583

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G+   +A+ +++    N   ++ L+ +++        N  S +  K +VFTG L+++
Sbjct: 584 DGIGNAAVEALEQYFTEAHNRDLLDRLVAQLTIEDAEAIAN-DSPVAGKTVVFTGALERM 642

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A+     LGA V+  +S KTD ++ G   GSK +KA +LGV+ + E+++  L+
Sbjct: 643 TRDEAKAKAQALGAKVAGSVSGKTDYLVAGPGAGSKAKKAAELGVETLTEDEWFDLI 699


>gi|294140434|ref|YP_003556412.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12]
 gi|293326903|dbj|BAJ01634.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12]
          Length = 683

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/725 (34%), Positives = 391/725 (53%), Gaps = 50/725 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M+  ++    + +I+   +E++ L   ++ H+ CYY    P I D+EYD L ++   +  
Sbjct: 1   MQNDKIQDHASFNIQAVAQEIAELTDILNGHNYCYYVDDAPSIPDAEYDRLLKQLKVLET 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A P+      P+ P  ++GG       +V H  P LSL+ +++ E+   F  RI      
Sbjct: 61  AHPEYCF---PDSPTQRVGGVALAKFDQVVHLKPMLSLDNVFSDEEFEAFYNRIND---- 113

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
           K D +  F  EPK+DG  ++I Y  G +  A  RGDG +GED++  +R I +IP  L   
Sbjct: 114 KTDTAPTFCCEPKLDGLAVSILYRDGIYERAGTRGDGKTGEDITENVRTILSIPMKLRGE 173

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           N P ++EVRGEV + K  F +LN+   A G K + NPRNAA+G LR+L+     +R L F
Sbjct: 174 NFPPLLEVRGEVIMPKQAFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRALGF 233

Query: 239 FVHGLGKTSEI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           + + LG         A   Y+ L +++  GFPV+  V+Q ++   +++YY ++ + RS+L
Sbjct: 234 YAYALGVVEPETWELADHHYDQLMQLKSWGFPVSAEVKQCDSVKDVIAYYTDIMTRRSSL 293

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            Y+IDG+V KVD    Q  LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPV
Sbjct: 294 AYEIDGVVIKVDNIDQQAMLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPV 353

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           ARL+P+ +GG  ++NATLHN D I  L            +++ D V+V+RAG+VIP++V 
Sbjct: 354 ARLKPIFVGGVTVSNATLHNADEIARL-----------GVKIKDTVIVRRAGDVIPQIVA 402

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           I+ ++R  DA    FP+ CP+C S V R          A  RCTGGL C AQ+ E +KHF
Sbjct: 403 IVADKRPDDASEIEFPTTCPVCDSLVERLEGE------AVARCTGGLFCEAQRKEAIKHF 456

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            SR A +I+G+G + ++     E     +  PAD+F L     T   ++      G  S 
Sbjct: 457 ASRKALDIDGMGDKVVEQLIDKE----LVESPADLFKLSASAMTMLDRM------GLKSA 506

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
           TNL  +I   +  +  RF+++LGIR VG   A +LA Y+ S                 + 
Sbjct: 507 TNLVKAIEVAKQTTFSRFLYALGIREVGEATAANLASYFKSLDKLKAA----------NA 556

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVF 654
              I+V  VG I+AQ +  F+    N+  V++L++         E    S  ++ +  V 
Sbjct: 557 EEFIKVDDVGIIVAQHLTHFFAQEHNLAVVDSLIQAGVNWPAIEEVAEESLSLKGQTWVL 616

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL ++ R+ A+  +  LGA V+  +S+ T  ++ G+  GSKL KAQ LG+KI++EE  
Sbjct: 617 TGTLTQLNRNDAKAQLQALGAKVAGSVSKNTSCLVAGEAAGSKLTKAQDLGIKILDEEGL 676

Query: 715 LFLLQ 719
           L +L 
Sbjct: 677 LAVLA 681


>gi|238897965|ref|YP_002923645.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|257096312|sp|C4K4K4|DNLJ_HAMD5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|229465723|gb|ACQ67497.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 702

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/733 (33%), Positives = 398/733 (54%), Gaps = 67/733 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   ++++ L   + +H+  Y+    P I D+EYDAL  +       +P+L     P+ 
Sbjct: 1   MKSMLEKINQLRDVLKHHEYLYHVNDAPEITDAEYDALLEKLREWESQYPELMN---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ-------------- 119
           P  K+G   + +   VTH +P LSL+ +++ +    F  R+    +              
Sbjct: 58  PTQKVGASPSTAFKPVTHQVPMLSLDNVFDEKGFLAFNKRVSERLEAESSAQKASLNPLV 117

Query: 120 ----------KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA 169
                     K    ++ F  E K+DG  +++ YEKG+   AA RG+G  GE+++  IR 
Sbjct: 118 RDSDQKNRSEKNVQEALTFCCELKLDGLAVSLIYEKGELTQAATRGNGFQGENITHNIRT 177

Query: 170 IPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN 228
           I +IP  L    +P+ IE+RGEVY+ +  F  LN +  A   K ++NPRNAA+G LR+L+
Sbjct: 178 IQSIPLRLKGKALPQRIEIRGEVYMPQAGFEKLNKQARANHEKIFSNPRNAAAGSLRQLD 237

Query: 229 P-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN 286
           P     R LNFF +G+G     +  +   + L +++  G PV++ +        ++++Y 
Sbjct: 238 PHITAQRPLNFFCYGVGLLEGGVLPQSHIQRLMQLKAWGLPVHDRITLCTGAEQVMAFYQ 297

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346
           E+   R+TL +DIDG+V KVD+  LQ++LG  A++PRW  + KF  ++ +T++L ++ Q+
Sbjct: 298 EIAQARATLGFDIDGIVIKVDDVLLQEKLGFLAKAPRWATAFKFPAQEKTTQVLGVEFQV 357

Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406
           GRTG LTPVARLEPV +GGAL++NA LHN D I  L            +R+GD V+V+RA
Sbjct: 358 GRTGALTPVARLEPVELGGALVSNANLHNADEIARL-----------GLRIGDTVVVRRA 406

Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466
           G+VIP++V++I+  R  +     FP  CPIC+S   R          A  RCTGGL C A
Sbjct: 407 GDVIPQIVNVIIESRPQNTVEIIFPHHCPICKSVAKRIEGE------AVIRCTGGLFCPA 460

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526
           Q+ E LKHFV+R A +IEGLG + +      +     ++ PAD+F L   +  S  ++  
Sbjct: 461 QRKEALKHFVARRALDIEGLGDKIIHQLVDKK----YVQNPADLFHLTSEKLLSLKRM-- 514

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                + S  NL +S+ K +  +  RF+++LGIR VG   A +LA Y+       +    
Sbjct: 515 ----REKSAQNLLNSLKKSQKTTFARFLYALGIREVGETTAANLALYFGQLDLLRKA--- 567

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                  D  +L +VP VG+++A+ +V+F+ N  +   + AL   +        +  +  
Sbjct: 568 -------DIETLKKVPDVGEVVAKNLVDFFGNEHHQQVISALESVLDWPDPEPIEKPNHP 620

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
             +K +V TG+L    R   + ++  LGA VS  +S+KTD +I G+NPGSK +KA++ G+
Sbjct: 621 FRDKTVVLTGSLNAFTRDDLKAHLISLGAKVSGSVSKKTDFLIAGENPGSKAQKAEKSGI 680

Query: 707 KIMNEEQFLFLLQ 719
           KIMNE + +  L+
Sbjct: 681 KIMNEPELIEFLK 693


>gi|82523924|emb|CAI78646.1| NAD-dependent DNA ligase [uncultured delta proteobacterium]
          Length = 670

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/714 (36%), Positives = 399/714 (55%), Gaps = 50/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A K +  L Q I YH+  YYQ   P I D+EYD L R    +   FPD    E  
Sbjct: 2   MDNNSAHKRIIELRQIIEYHNKRYYQQDAPEISDAEYDLLMRELHNLEAQFPD---DELA 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G          TH  P LSL   ++ E++  F  R+ R       ++I +  E
Sbjct: 59  SSPTQRVGAAPLAKFVSFTHPSPMLSLANAFSEEEIIDFDNRLKRL---ASVDNISYVAE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEV 187
           PK+DG  + I YE G F+  A RGDG +GEDV+  ++ I T+P  +  +    IP  +EV
Sbjct: 116 PKLDGLAVNIIYENGFFIKGATRGDGTTGEDVTQNLKTINTLPLKIKKSGETLIPSFMEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKT 246
           RGEVY+ K  F  LN   +  G +P+ANPRNAA+G LR+L+     R  L+ F++G+G  
Sbjct: 176 RGEVYMEKEPFEKLNQRRVKDGEEPFANPRNAAAGSLRQLDSKITARRPLSIFLYGIGNI 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             +     +E+LQ +   GFPVN  + QA   +  + Y+N + + R TLPYDIDG+V KV
Sbjct: 236 QGMNFPTHWELLQALSVWGFPVNKLIEQAKDINACIRYFNRIGNARDTLPYDIDGVVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D  +LQ  LG  +R+PRW ++ KF  +Q +T + DI IQ+GR G LTPVA +EPVN+GG 
Sbjct: 296 DGLALQNTLGNISRNPRWALACKFPAQQETTIIKDIIIQVGRMGTLTPVAIMEPVNVGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++ ATLHNED I             +D+R+GD V+++RAG+VIP+VV +I   R    +
Sbjct: 356 MVSRATLHNEDEI-----------SKKDVRIGDAVIIQRAGDVIPEVVKVIDKNRTDRGK 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  PS CP C S VVR           A RC   ++C AQ  E ++HF SR A +IEGL
Sbjct: 405 KFKMPSHCPECGSEVVRFEGE------VAQRCVN-ISCPAQLKEHIRHFASRGALDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++     F ++     I  PAD++ L + +     +        + S   L DSI + +
Sbjct: 458 GEKLSAQLFDAK----LIADPADLYFLTKDKLLELDRQA------EKSAQKLIDSIARSK 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           N  L++FI++LGIRHVG   A+ LA Y+ S +N       +IA  ++D      +  +G 
Sbjct: 508 NPPLDKFIYALGIRHVGERTAKLLAGYFGSIEN-------LIAAKSEDLTV---INEIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            I+ +IVEF+  P+N  AV    ++      + E + ++ +  K  VFTGT++++ R+KA
Sbjct: 558 EISASIVEFFHEPKN-KAVMKKFEKAGVIPQKKEISHNAPLAGKAFVFTGTMERMGRNKA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ V  +G  V + +++KT  ++ G  PGSKL+KA   G+KI++E++FL L+ +
Sbjct: 617 KDIVENMGGTVQSGVTKKTTYVVAGAEPGSKLDKANSSGIKIISEDEFLKLIGK 670


>gi|293376177|ref|ZP_06622422.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909]
 gi|292645164|gb|EFF63229.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909]
          Length = 669

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/708 (35%), Positives = 381/708 (53%), Gaps = 53/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ ++  YY   KP + D EYD L +    +    P+L  +     P  +
Sbjct: 10  KLRIEELTKLLTQYNHEYYVLDKPSVSDREYDRLMQELMELEEKHPELKSN---TSPTVR 66

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K+ H  P LSL   +N  DLR F TR+ +   K       +  E KIDG 
Sbjct: 67  VGGKVLEGFNKIEHEKPMLSLSNAFNEGDLRDFDTRVKKVSPK-----ATYVCELKIDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y  G FV  A RGDG  GED+S  ++ I TIP  ++ N P  +EVRGEVY+SK  
Sbjct: 122 AVTLHYNNGAFVKGATRGDGVIGEDISENLKTIKTIPLHINNNQP--LEVRGEVYMSKAT 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
              LN+E  A G + +ANPRNAA+G LR+L+      R L  F + +   +++      E
Sbjct: 180 LEKLNEERAAKGEELFANPRNAAAGSLRQLDSRIAAKRNLAMFCYAVPSAADLGCTTHEE 239

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQK+  LGF VN   +       ++ Y N   + R  LPY+IDG+V KV++   Q +LG
Sbjct: 240 SLQKISELGFNVNPNRQVCENIDEVLEYINRWTNARFDLPYEIDGIVIKVNQLQEQDKLG 299

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T L DI   +GRTG++TP A LEPV + G  ++ ATLHNE
Sbjct: 300 NTVKSPRWAIAYKFPAEEVETILTDIIFTVGRTGMVTPNAVLEPVRVAGTRVSRATLHNE 359

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DY+             RDIR+ DRV++++AGE+IP+VV  +++ R+ D  PF   S CP 
Sbjct: 360 DYVTS-----------RDIRINDRVIIRKAGEIIPEVVKPVIDARNGDEIPFEMISTCPR 408

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR+         A + C   + C A+ +E L HFVSRDA NI+GLG + ++  F+
Sbjct: 409 CSSELVREAGE------ADYYCLN-IDCPARIVESLSHFVSRDAMNIDGLGIKVVEQLFE 461

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I   ADI+ L + Q     ++      GD   TNL ++I   +  SLE+ +F 
Sbjct: 462 HK----LIENVADIYRLTKEQLLPLERM------GDKKATNLLNAIEASKENSLEKLLFG 511

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ A+ LA  +       + +++++    DD+     V  VGD+IA +IV ++
Sbjct: 512 LGIRHVGSKTAKVLATQF-------ENMDSLMDAKFDDFKV---VAEVGDVIANSIVHYF 561

Query: 617 QNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
               N+  ++ L +       +     + N       K +V TGTL+ + R +A   +  
Sbjct: 562 SQTANVELIDQLKELGLNMSYKGARLADANTEHVFFGKTVVLTGTLETLSRKEAGIKLES 621

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           LGA VS  +S  TD +I G   GSKL KAQQLGV +++E  FL ++ +
Sbjct: 622 LGAKVSGSISSNTDYLIAGAKSGSKLTKAQQLGVTVLDEATFLSMMNE 669


>gi|261207462|ref|ZP_05922148.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6]
 gi|289565873|ref|ZP_06446314.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF]
 gi|294618097|ref|ZP_06697694.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679]
 gi|260078353|gb|EEW66058.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6]
 gi|289162333|gb|EFD10192.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF]
 gi|291595669|gb|EFF26965.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679]
          Length = 679

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/716 (33%), Positives = 390/716 (54%), Gaps = 53/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 5   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +  D    +  
Sbjct: 63  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRVVD----YCC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L    P  IEVRGE
Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKE--PMNIEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EF
Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIKL-----------KDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L +  R 
Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTRE 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L +
Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 673


>gi|293569137|ref|ZP_06680444.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071]
 gi|291588184|gb|EFF20025.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071]
          Length = 679

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/716 (33%), Positives = 391/716 (54%), Gaps = 53/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 5   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +  D    +  
Sbjct: 63  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRVVD----YCC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L    P  IEVRGE
Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKE--PMNIEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EF
Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIKL-----------KDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E LKHFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINP-KCPAQMKEGLKHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L +  R 
Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTRE 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L +
Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 673


>gi|293557127|ref|ZP_06675681.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039]
 gi|294614139|ref|ZP_06694060.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636]
 gi|291592989|gb|EFF24577.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636]
 gi|291600696|gb|EFF30994.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039]
          Length = 679

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/720 (33%), Positives = 392/720 (54%), Gaps = 53/720 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 5   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KV H IP  SL  +++ E+L  F  R+ +   +  D    +  
Sbjct: 63  -DSPTQRVGGKVLEGFEKVIHDIPLYSLNDVFSKEELIAFDQRVQKAVGRVVD----YCC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L    P  IEVRGE
Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKE--PMNIEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIKL-----------KDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L ++ R 
Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L + ++ 
Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 677


>gi|218439827|ref|YP_002378156.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424]
 gi|254781306|sp|B7K8U0|DNLJ_CYAP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218172555|gb|ACK71288.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424]
          Length = 678

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/712 (32%), Positives = 373/712 (52%), Gaps = 51/712 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++ +  L  ++      YY    PI+ D  YD L R    I   +P+L     P+ P 
Sbjct: 7   EIKQRVDQLRSQLQKASYAYYVLDNPIMEDVVYDQLYRELQNIETQYPELI---TPDSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +++     V H+IP  SLE  +N+++  ++  R  R     D     +  E KID
Sbjct: 64  QRVGDKLSEQFISVNHNIPLYSLENAFNLQEFARWQERWQRLTP--DVTQFEYVCELKID 121

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           G+ I + YE G  V    RGDG  GE+++  I+ I +IP  L+L N P  IEVRGE ++ 
Sbjct: 122 GSAIALTYENGLLVRGVTRGDGIVGEEITPNIKTIRSIPLKLALDNPPVRIEVRGEAFLP 181

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL-GKTSEIFAK 252
             +F  +N E    G   +ANPRNAA+G LR+L+P  +  R L FF + L    S     
Sbjct: 182 IEEFERINQEKQTAGESLFANPRNAAAGTLRQLDPRIVDRRRLQFFAYTLYVIDSPSTPT 241

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q+E L+ ++ +GF VN   +   +   +  YY    + R  LPY  DG+V K++++ LQ
Sbjct: 242 TQWESLEDLQQMGFLVNPNRKLCQSEAEVDQYYQLWDTERHNLPYMTDGVVVKLNDYQLQ 301

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG   + PRW I+ K+  ++A T++ +I + +GRTG +TP+A +EPV + G  +  AT
Sbjct: 302 QQLGFTQKFPRWAIALKYPAEEAPTQVKNITVNVGRTGAVTPMAIMEPVQLAGTTVQKAT 361

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +  L           DIRVGD V++++AGE+IP+VV +I   R P+ QP+  P+
Sbjct: 362 LHNSDRVAQL-----------DIRVGDTVIIRKAGEIIPEVVRVIEELRPPNTQPYQMPT 410

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +VR          A  RC    +C A     L H+ SRDA +I GLG++ + 
Sbjct: 411 QCPECHSTLVRPKGE------AVTRCVNS-SCPAILRGSLVHWCSRDALDIRGLGEKVVI 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               +      +   AD++ L+  Q  S  ++         S  NL ++INK +     R
Sbjct: 464 LLIDN----GLVHSIADLYHLKVEQIASLERMGT------KSANNLINAINKSKQQPWSR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            ++ LGIR+VG+  A+ L+  + S +  +Q            + SL  V  +G  IAQ++
Sbjct: 514 VLYGLGIRYVGSVTAKLLSDNFKSVEQLSQA----------SFTSLESVYGIGAEIAQSV 563

Query: 613 VEFYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            ++++   N   ++      L  E      ++    S+ +  K +V TGTL  ++R++AQ
Sbjct: 564 YDWFKIEANQTLIKNLQQAELQFETLSETPKYPPISSTPLAGKTVVITGTLPSLKRNEAQ 623

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E + + G  V+  +S KTD ++VG++ GSKL KAQQLG+  ++EEQ L ++ 
Sbjct: 624 ELIEKAGGKVTNSVSSKTDYLLVGEDAGSKLTKAQQLGISQLSEEQLLKMIN 675


>gi|257882881|ref|ZP_05662534.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502]
 gi|257818539|gb|EEV45867.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502]
          Length = 674

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 390/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S   
Sbjct: 1   MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +  D    +  E
Sbjct: 58  DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRVVD----YCCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L    P  IEVRGE 
Sbjct: 114 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKE--PMNIEVRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     + 
Sbjct: 172 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPMQ 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EFS
Sbjct: 232 AKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEFS 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++ 
Sbjct: 292 LQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ +  
Sbjct: 352 ASLHNGDYIKL-----------KDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQL 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 401 PTHCPVCGSELVHLDEE------VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPRV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+  +  +     +   AD++ L   +  +  KI+      + S  N+  +I+  ++ S+
Sbjct: 454 LEQMYDKK----LVADVADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNSV 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA 
Sbjct: 504 ERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N      +  L +       +       + V S  + K +V TG L +  R +
Sbjct: 554 SVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTREE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L +
Sbjct: 614 AKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 668


>gi|119386790|ref|YP_917845.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222]
 gi|166216224|sp|A1B9F5|DNLJ_PARDP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119377385|gb|ABL72149.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222]
          Length = 765

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/758 (39%), Positives = 441/758 (58%), Gaps = 63/758 (8%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L P+  L ++ A  E + L +E++  +  YYQ   P I D+EYDA KRR + I   FPDL
Sbjct: 22  LPPVSGLDVKAAEAEHARLSEEVAQANLAYYQEDAPFISDAEYDASKRRLEEIEARFPDL 81

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A S     P  ++G   +    KV H +P LSLE  ++  D+  F+ R+  F        
Sbjct: 82  AHS---GSPTAQVGAAPDTRFAKVPHRLPMLSLENGFSQGDVEAFVQRVRSFLNLASGAP 138

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
           +  T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I  IP  LS +  PE+
Sbjct: 139 LEVTAEPKIDGLSLSLRYEGGRLVQAATRGDGAVGENVTANARTIADIPGQLSGDGYPEV 198

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGE Y+S  DF  LN        + +ANPRNAA+G LR+L+P+    R L FF +  
Sbjct: 199 LEIRGECYMSHEDFEKLNQS---ETGRVFANPRNAAAGSLRQLDPSVTAARPLRFFAYAW 255

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+ S  FA  Q E +++M+  GF  N   R   +   ++S + E++ +R+TL YDIDG+V
Sbjct: 256 GEVSASFAGTQMEAVRRMQAFGFQTNPLTRICASVSEMLSAWAEIEQMRATLGYDIDGVV 315

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV++ + Q +LG R+ +PRW ++HKF  ++A TRL  IDIQ+GRTG L+PVARL PV +
Sbjct: 316 YKVNDLAYQARLGMRSTTPRWALAHKFPAERAWTRLEAIDIQVGRTGALSPVARLHPVTV 375

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++NATLHNEDYI G  A G  +RGG+DIR+GD V V RAG+VIPKV D+ + +R  
Sbjct: 376 GGVVVSNATLHNEDYIAGRGADGSEIRGGKDIRIGDWVEVYRAGDVIPKVADVDLAKRPS 435

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +A+P++FP+ CP C S  +R+      +  +  RCTGGL C AQ +E+L+HFVSR AF+I
Sbjct: 436 EAEPYAFPTTCPECGSPAIRE------EGDSVRRCTGGLICPAQAVEKLRHFVSRAAFDI 489

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGDVSVTNLYDSI 542
           EGLG + ++  F+       I  PADIFTLQ R      T+++N  G+G+ S  +L+ +I
Sbjct: 490 EGLGAKLVEELFRD----GWIAEPADIFTLQDRYGPGQLTQLKNREGWGEKSAASLFQAI 545

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN----------------- 585
            KRR I L R +F+LGIRHVG   A+ LA++Y S++     ++                 
Sbjct: 546 EKRREIPLARLLFALGIRHVGEVAAQDLARHYGSWEALEIALDTARPAALAHRVAEDAAL 605

Query: 586 --------------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
                                     ++       W  LI    +G ++A ++ + + N 
Sbjct: 606 AEREAARAEGRRARPSEARAAALAQVDLSPEATAAWTGLIAADGIGPVLAMSLSDAFANE 665

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           R   A++ L+  ++  +    +   S I  K LVFTGTL+K+ R +A+     LGA V+ 
Sbjct: 666 RERAAIDRLVSFLTV-LPPEARATDSAIAGKTLVFTGTLEKMTRAEAKARAEALGAHVAG 724

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +S KTD++I G   GSK +KA +LG+K+++E+++L +
Sbjct: 725 SVSAKTDLLIAGPGAGSKAKKAAELGIKVIDEDEWLAI 762


>gi|69246831|ref|ZP_00604140.1| NAD-dependent DNA ligase [Enterococcus faecium DO]
 gi|260560049|ref|ZP_05832227.1| NAD-dependent DNA ligase [Enterococcus faecium C68]
 gi|293559999|ref|ZP_06676507.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162]
 gi|294621040|ref|ZP_06700232.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317]
 gi|314937827|ref|ZP_07845144.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04]
 gi|314941627|ref|ZP_07848507.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C]
 gi|314948874|ref|ZP_07852243.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082]
 gi|314951008|ref|ZP_07854075.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A]
 gi|314993009|ref|ZP_07858405.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B]
 gi|314996456|ref|ZP_07861499.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01]
 gi|68195064|gb|EAN09526.1| NAD-dependent DNA ligase [Enterococcus faecium DO]
 gi|260073884|gb|EEW62208.1| NAD-dependent DNA ligase [Enterococcus faecium C68]
 gi|291599354|gb|EFF30379.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317]
 gi|291606087|gb|EFF35513.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162]
 gi|313589438|gb|EFR68283.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01]
 gi|313592532|gb|EFR71377.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B]
 gi|313596863|gb|EFR75708.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A]
 gi|313599518|gb|EFR78361.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C]
 gi|313642858|gb|EFS07438.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04]
 gi|313644664|gb|EFS09244.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082]
          Length = 679

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/716 (33%), Positives = 390/716 (54%), Gaps = 53/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 5   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +  D    +  
Sbjct: 63  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRVVD----YCC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L    P  IEVRGE
Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKE--PMNIEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EF
Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIKL-----------KDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L +  R 
Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTRE 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L +
Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 673


>gi|169797009|ref|YP_001714802.1| DNA ligase [Acinetobacter baumannii AYE]
 gi|169149936|emb|CAM87830.1| DNA ligase [Acinetobacter baumannii AYE]
          Length = 691

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/719 (35%), Positives = 380/719 (52%), Gaps = 47/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   
Sbjct: 14  MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 71  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP---NQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T       I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLLRLD----LLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +         +             P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEALKKT----------PDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L                  +  +  V TGTL+++ R +A
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTL 690


>gi|260550982|ref|ZP_05825187.1| DNA ligase [Acinetobacter sp. RUH2624]
 gi|260405930|gb|EEW99417.1| DNA ligase [Acinetobacter sp. RUH2624]
          Length = 691

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/719 (35%), Positives = 382/719 (53%), Gaps = 47/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   
Sbjct: 14  MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQT--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 71  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP---NQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCE 247

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R +L  +IDG+V KV
Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPSLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  +A+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T       I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLLRLD----LLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +        ++             P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEVLKKT----------PDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L                  +  +  V TGTL+++ R +A
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKATKLGIPVMNETDFLSLMASYGQTL 690


>gi|34581289|ref|ZP_00142769.1| DNA ligase [Rickettsia sibirica 246]
 gi|28262674|gb|EAA26178.1| DNA ligase [Rickettsia sibirica 246]
          Length = 689

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/712 (38%), Positives = 421/712 (59%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  +  N+PE +EVR
Sbjct: 120 -CEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKI-DNVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKLHYTPEDI------IIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++ L + ++      E    S + +K +VFTG+L  + R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIE-DYKETREQSSLMDKIVVFTGSLPTMSRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++VG + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVVGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|304312656|ref|YP_003812254.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1]
 gi|301798389|emb|CBL46613.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1]
          Length = 677

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/714 (35%), Positives = 391/714 (54%), Gaps = 46/714 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S    R+E  +L  ++  H+  YY    P + DSEYD L +R  A+  A PDL      +
Sbjct: 4   SSASDREEAQALRAQLQEHNYRYYVLDDPSVPDSEYDRLFQRLLALEQAHPDLITQ---D 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G     +  +V H +P LSL+ ++N  +L  F  RI+   + +    + F  EP
Sbjct: 61  SPTQRVGAAPLAAFKQVQHRVPMLSLDNVFNAAELLAFEKRIHDRLKSEV--PVDFVCEP 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           K+DG  +++ Y  G FV  A RGDG +GED++  +R + T+P  L     P  +EVRGEV
Sbjct: 119 KLDGLAVSLLYRDGLFVQGATRGDGETGEDITQNLRTLSTVPLRLMGEGFPSELEVRGEV 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEI 249
           Y+ K     LN    + G K +ANPRNAA+G LR+L+P     R L  + +G+G      
Sbjct: 179 YMPKAGLAELNQRQTSAGDKTFANPRNAAAGSLRQLDPRITAKRPLELYCYGIGHVAGGT 238

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L  +   GF VN  +R A        YY+ + + R  L YDIDG+VYKVDE 
Sbjct: 239 LPARHSAILAALGKWGFRVNPEIRSAANAAECQRYYDALLARRDALAYDIDGVVYKVDEL 298

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW I+HKF  ++  TRLLD++ Q+GRTG +TPVARLEPV +GG  ++
Sbjct: 299 ALQQRLGFVSRAPRWAIAHKFPAQEEITRLLDVEFQVGRTGAVTPVARLEPVYVGGVTVS 358

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D +  L           DI VGD V+V RAG+VIP++V ++   R P A    
Sbjct: 359 NATLHNMDEVARL-----------DIHVGDTVVVLRAGDVIPRIVRVLPERRPPYAPVVM 407

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S + R+         A  RC+GGL C AQ  E +KHF +R A +I+GLG +
Sbjct: 408 LPAACPVCGSAITREEGE------AVARCSGGLFCPAQTKEAIKHFSARRAMDIDGLGDK 461

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D    +      +   AD+++L      +  ++      G+ S   L  +I K RN +
Sbjct: 462 IVDQLVDT----GLVASVADLYSLASASLAALERM------GEKSADKLVAAIAKSRNTT 511

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +RF+F+LGIR VG   A++LA++Y +     +           D  SL+ VP +G + A
Sbjct: 512 FQRFLFALGIREVGEATAQTLARHYETLDALLRA----------DEASLLEVPDIGPVSA 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQE 668
           + IV+F+  P N   ++ LL          + +VS+  + ++ LV TG+L ++ R +A +
Sbjct: 562 RNIVQFFAQPHNREVLDRLLAAEIHWPAPVKADVSALPLSDQTLVLTGSLSQLSRDEAGD 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++  LGA VS  +S+ T  +  G+  GSKL +A+ LG+ +  E++ + LL+++ 
Sbjct: 622 HLRALGAKVSGSVSKNTTAVYAGEKAGSKLARAESLGIPVYTEDELMSLLREHG 675


>gi|257878462|ref|ZP_05658115.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933]
 gi|257889341|ref|ZP_05668994.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410]
 gi|257894353|ref|ZP_05674006.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408]
 gi|258616016|ref|ZP_05713786.1| DNA ligase, NAD-dependent [Enterococcus faecium DO]
 gi|257812690|gb|EEV41448.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933]
 gi|257825701|gb|EEV52327.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410]
 gi|257830732|gb|EEV57339.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408]
          Length = 678

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/716 (33%), Positives = 390/716 (54%), Gaps = 53/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 4   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +  D    +  
Sbjct: 62  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRVVD----YCC 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L    P  IEVRGE
Sbjct: 117 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKE--PMNIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 175 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EF
Sbjct: 235 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 295 SLQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 355 RASLHNGDYIKL-----------KDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 404 LPTHCPVCGSELVHLDEE------VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +  KI+      + S  N+  +I+  ++ S
Sbjct: 457 VLEQMYDKK----LVADVADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L +  R 
Sbjct: 557 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTRE 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L +
Sbjct: 617 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 672


>gi|88810628|ref|ZP_01125885.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
 gi|88792258|gb|EAR23368.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
          Length = 672

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/706 (35%), Positives = 398/706 (56%), Gaps = 45/706 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
               + +++L  +I  H+  Y+    P + D++YD L R   A+    PDL     P+ P
Sbjct: 7   AAVERRVAALRDQIEQHNYRYFVLDDPQVSDADYDVLMRELQALEADHPDLV---SPDSP 63

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G +   +  +  H +P LSL+  ++  +L +F  RI         N I +  EPK+
Sbjct: 64  TQRVGAKPVEAFGEARHGVPMLSLDNAFDAGELGEFDRRIRERLG---INRIAYMAEPKL 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + +RYE+G+ V    RGDG  GED++A IR + TIP  L     PE+IEVRGE+ I
Sbjct: 121 DGLSVNLRYEQGRLVQGGTRGDGQVGEDITANIRTLRTIPLRLRGKGWPELIEVRGEIVI 180

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAK 252
            K DF  LN   +  G + +ANPRNAA+G LR+L+P    R  L FF  G+G++ E+ A 
Sbjct: 181 RKADFKHLNTLRLEAGERLFANPRNAAAGSLRQLDPRVTARRPLTFFAFGIGESREVIAG 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q ++L+++   GFPV   V+  +     ++YY  + + R TLP++IDG VYKVD+ S Q
Sbjct: 241 RQSQILERLHGWGFPVYERVQVVSGVEECLAYYRRLMAQRETLPFEIDGTVYKVDDLSSQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  AR+PRW +++K   ++  + +LDI+  +GRTG++TPVARLEPV +GG ++ +AT
Sbjct: 301 QRLGFTARAPRWAVAYKLPAREGLSVVLDIEPSVGRTGVITPVARLEPVPLGGVIVRHAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED ++            +D+R+GD V+++RAG+VIP+++ +   +R   AQP+  P 
Sbjct: 361 LHNEDEVRR-----------KDVRIGDTVMLRRAGDVIPEIIGVQPEKRPQGAQPWRMPL 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C + V+R       +  AAHRC GGL C+AQ+   + HF SR A +I+GLG++ ++
Sbjct: 410 KCPVCSAEVMRL------EHQAAHRCLGGLYCAAQRTGAILHFASRRAMDIDGLGEKLVE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      +   AD+++L+R Q     ++      G+ S  NL  +I+  R  +L R
Sbjct: 464 QLVGR----GLVATVADLYSLERAQLVELERM------GERSAGNLLRAIDASRATTLAR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGI  VG   A+ LA++Y       +     +           R+P +G ++AQ I
Sbjct: 514 FLYALGIPEVGEVTAKRLAEHYGDLDPLERATEEAL----------TRLPDIGPVLAQRI 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             F+  P N   ++AL +           N S+ +  +  V TGTL+   R +AQE +  
Sbjct: 564 THFFAQPHNREVIDALRRSGLHWSVPDGANQSTPLAGRVFVLTGTLKGYTREEAQERIEA 623

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           LG  V+  +S+ TD +IVG+ PGSK +KA QLG+ +++E  F  L+
Sbjct: 624 LGGRVTGHVSKNTDYMIVGEAPGSKRDKAVQLGITLLDESGFRQLI 669


>gi|332970057|gb|EGK09055.1| NAD-dependent DNA ligase LigA [Desmospora sp. 8437]
          Length = 670

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/715 (33%), Positives = 381/715 (53%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  ++A + + +L +EI  HD  Y+  ++P+I D EYDA+ R    +    P+L     P
Sbjct: 1   MERKEAEQRIEALRREIHEHDHRYHVLNQPVISDQEYDAMMRELLGLEQEHPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      KV H+ P LSL   +N E+L++F  RI R     + + + +  E
Sbjct: 58  DSPSQRVGGEPLPYFEKVRHTQPMLSLANAFNFEELQEFDRRIRRL---AEVDGVDYVCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  ++IRYE+G  V  A RGDG +GE+++  ++ I ++P  L   +   +EVRGE 
Sbjct: 115 LKIDGLAVSIRYEEGVMVRGATRGDGTTGENITQNLKTIRSLPLRLRDAV--TLEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ + +F  +N +  + G   +ANPRNAA+G LR+L+P     R L+ F++G+G+     
Sbjct: 173 FLPRKEFERINRQKESRGETLFANPRNAAAGALRQLDPKLTAERALDIFLYGIGEIHGTE 232

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LG  VN           ++ + +  +  R  L YDIDG+V KVD+ 
Sbjct: 233 TPGTHTESLDLLSRLGLKVNPDWVTVKGIDDVMQFIDHWREHREELGYDIDGIVIKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            L+++LG  A+SPRW I++KF  ++  T L  ++I++GRTG +TP A L+PV + G  + 
Sbjct: 293 ELRERLGTTAKSPRWAIAYKFPAEEGVTVLRGVEIKVGRTGAVTPTALLDPVILAGTTVQ 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNED+I+            ++I +GD V+VK+AG++IP+VV ++   R  + +P+ 
Sbjct: 353 RATLHNEDFIR-----------EKEILLGDHVIVKKAGDIIPEVVGVVQERRTGEEKPYQ 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +VR           A RC     C AQ  E + HFVSR A NIEGLG++
Sbjct: 402 MPTECPECGSELVRLEGE------VALRCINP-QCPAQTREGIIHFVSRGAMNIEGLGEK 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F     A  +R PAD++ L+        ++      G  SV NL  +I + +  S
Sbjct: 455 VVTQLFN----ADLVRGPADLYDLKAEDLLPLERM------GKKSVENLLAAIEESKQNS 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E+ IF LGIR VGA+ A  LA+++   +               D   L  V  +G  +A
Sbjct: 505 VEKLIFGLGIRFVGAKGALILAQHFGGLEAIMAA----------DREELEAVDEIGPKMA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-----SSEIENKKLVFTGTLQKIQRH 664
           ++I  ++  P     +  L       + +    V      S    K +V TGTL+ + R 
Sbjct: 555 ESIETYFDKPEVKETLRRLEAAGVNMMYKGPAPVQRGDSDSPFAGKTVVLTGTLESMSRK 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A + +   G  V+  +S+ TD +I G+  GSKL+KA+ LGV +++E+ FL +L+
Sbjct: 615 EAADRIEAQGGKVTGSVSKNTDYVIAGEKAGSKLKKARDLGVDVVDEQAFLAMLE 669


>gi|166216290|sp|Q0AHH6|DNLJ_NITEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 683

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/720 (35%), Positives = 382/720 (53%), Gaps = 52/720 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S +   + L +L   I+ HD  YY    PII D++YD L R    +   +P L     P+
Sbjct: 3   SEKIIEERLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLI---TPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G        ++TH  P LSL   +  ++   F  RI         + + + +EP
Sbjct: 60  SPTQRVGAPPLKVFARLTHQTPMLSLTNAFTEDEAIAFDKRIREALN---VDQVNYAVEP 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           K DG  +++ Y  G     A RGDG++GED++  +R IP+IP  L +  + +  EVRGEV
Sbjct: 117 KFDGLAVSLVYTNGILTNGATRGDGYTGEDITLNLRTIPSIPLRLQTATVTDQFEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG--LGKTSE 248
            + K DF  LN++    G K +ANPRNAA+G LR+L+      R L FF +   L    +
Sbjct: 177 VMLKADFEHLNEQQRNKGEKLFANPRNAAAGSLRQLDSNITAARKLTFFAYDAVLSHKDQ 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            F     E+L  ++   F V           G+++YY+EM ++R +LPY+IDG+VYKVD 
Sbjct: 237 PFFSKHSEILDYLKSQQFLVAQQNGTTTGVAGLLTYYHEMGALRLSLPYEIDGVVYKVDN 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  +R+PR+ I+HKF  ++AST LL I+IQ+GRTG LTPVARL PV +GG  +
Sbjct: 297 LTQQETLGYVSRAPRFAIAHKFPAQEASTELLTIEIQVGRTGALTPVARLAPVFVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHNED ++            + I +GD V+V+RAG+VIP+VV +I  +R   AQPF
Sbjct: 357 TNATLHNEDEVQR-----------KQIMIGDTVIVRRAGDVIPEVVAVIPEQRPAHAQPF 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S+  R          A  RCTGGL C AQ+ + + HF SR A +I+GLG+
Sbjct: 406 IMPDHCPVCGSKAARLPGE------AVTRCTGGLYCPAQRKQAIWHFASRRALDIDGLGE 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D     E     +  PAD++ L      S  ++       + S  NL  +I   +  
Sbjct: 460 KLIDQLIDRE----LVHTPADLYKLNIDTLASLERMA------EKSARNLVTAIEHSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIRHVG   A++LA                      D   L ++P VG I+
Sbjct: 510 TLPRFIYALGIRHVGEATAKALANQASHLDQLMTL----------DIEQLQQIPDVGPIV 559

Query: 609 AQAIVEFYQNPRNICAVEA-----LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           AQ+I++F+    N   +       L  E+     +  +  +S +  K  V TGTL  + R
Sbjct: 560 AQSIIDFFSEAHNREVIRQLLDSGLQWEIPNHGVQQSEQTNSAVSGKTFVLTGTLPTMTR 619

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +A+  + Q G  V+  +S  T  ++ G +PGSK  KA  LG+ +++E+Q L LLQ  +T
Sbjct: 620 DQAKIKIEQQGGKVTGSVSSATSYVVAGSDPGSKYAKAIGLGISVLDEDQLLSLLQNIST 679


>gi|114330949|ref|YP_747171.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91]
 gi|114307963|gb|ABI59206.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91]
          Length = 715

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/720 (35%), Positives = 382/720 (53%), Gaps = 52/720 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S +   + L +L   I+ HD  YY    PII D++YD L R    +   +P L     P+
Sbjct: 35  SEKIIEERLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLI---TPD 91

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G        ++TH  P LSL   +  ++   F  RI         + + + +EP
Sbjct: 92  SPTQRVGAPPLKVFARLTHQTPMLSLTNAFTEDEAIAFDKRIREALN---VDQVNYAVEP 148

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           K DG  +++ Y  G     A RGDG++GED++  +R IP+IP  L +  + +  EVRGEV
Sbjct: 149 KFDGLAVSLVYTNGILTNGATRGDGYTGEDITLNLRTIPSIPLRLQTATVTDQFEVRGEV 208

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG--LGKTSE 248
            + K DF  LN++    G K +ANPRNAA+G LR+L+      R L FF +   L    +
Sbjct: 209 VMLKADFEHLNEQQRNKGEKLFANPRNAAAGSLRQLDSNITAARKLTFFAYDAVLSHKDQ 268

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            F     E+L  ++   F V           G+++YY+EM ++R +LPY+IDG+VYKVD 
Sbjct: 269 PFFSKHSEILDYLKSQQFLVAQQNGTTTGVAGLLTYYHEMGALRLSLPYEIDGVVYKVDN 328

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  +R+PR+ I+HKF  ++AST LL I+IQ+GRTG LTPVARL PV +GG  +
Sbjct: 329 LTQQETLGYVSRAPRFAIAHKFPAQEASTELLTIEIQVGRTGALTPVARLAPVFVGGVTV 388

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHNED ++            + I +GD V+V+RAG+VIP+VV +I  +R   AQPF
Sbjct: 389 TNATLHNEDEVQR-----------KQIMIGDTVIVRRAGDVIPEVVAVIPEQRPAHAQPF 437

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S+  R          A  RCTGGL C AQ+ + + HF SR A +I+GLG+
Sbjct: 438 IMPDHCPVCGSKAARLPGE------AVTRCTGGLYCPAQRKQAIWHFASRRALDIDGLGE 491

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D     E     +  PAD++ L      S  ++       + S  NL  +I   +  
Sbjct: 492 KLIDQLIDRE----LVHTPADLYKLNIDTLASLERMA------EKSARNLVTAIEHSKKT 541

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIRHVG   A++LA                      D   L ++P VG I+
Sbjct: 542 TLPRFIYALGIRHVGEATAKALANQASHLDQLMTL----------DIEQLQQIPDVGPIV 591

Query: 609 AQAIVEFYQNPRNICAVEA-----LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           AQ+I++F+    N   +       L  E+     +  +  +S +  K  V TGTL  + R
Sbjct: 592 AQSIIDFFSEAHNREVIRQLLDSGLQWEIPNHGVQQSEQTNSAVSGKTFVLTGTLPTMTR 651

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +A+  + Q G  V+  +S  T  ++ G +PGSK  KA  LG+ +++E+Q L LLQ  +T
Sbjct: 652 DQAKIKIEQQGGKVTGSVSSATSYVVAGSDPGSKYAKAIGLGISVLDEDQLLSLLQNIST 711


>gi|269836970|ref|YP_003319198.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745]
 gi|269786233|gb|ACZ38376.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745]
          Length = 680

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/716 (35%), Positives = 386/716 (53%), Gaps = 52/716 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +     ++ ++ L + I  ++  YY   +P + D+EYDAL      +  A P+L     P
Sbjct: 1   MDDVDVQERIAELRKLIERYNYEYYVLDQPSVSDAEYDALMNELRELEAAHPELI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G   + +   V H IP LSL   ++ ++LR++  R+YR   ++D   I F  E
Sbjct: 58  DSPTQRVGAPPSSAFGTVRHEIPMLSLANAFSEQELRQWAERVYRLAGRRD---IEFVTE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEV 187
           PKIDG+ ++I Y  G +   A RGDG  GEDV+A IR +  +P  L     +++PE++EV
Sbjct: 115 PKIDGSAVSILYRNGVYERGATRGDGIQGEDVTANIRTVRNVPLRLHDVDGVHVPEVLEV 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE+Y+ K+DF ALN      G   +ANPRNAA+G LR+L+P    +R L F+   +G  
Sbjct: 175 RGEIYMRKSDFEALNRRRGEAGEILFANPRNAAAGSLRQLDPNVTASRPLRFYAWDVGII 234

Query: 247 SEIFAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                       L  +R LG P         T   + +      S+R  L ++IDG+V K
Sbjct: 235 EGGQHNGTHTANLDLLRTLGIPTAPDYHVWQTIDEVWAECERWLSLRDELDFEIDGVVVK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++  LQ +LG  +R PRW I++KF   Q +T L DI++ +GRTG L PVA L+PV IGG
Sbjct: 295 VNDEDLQAELGTVSREPRWAIAYKFPAIQKTTILRDIEVNVGRTGSLNPVAILDPVEIGG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++  ATLHNED I+ L           D+ +GDRV+V+R+G+VIPK+V ++V+ R  D 
Sbjct: 355 VVVRRATLHNEDEIRRL-----------DLLIGDRVVVQRSGDVIPKIVAVVVSARDGDE 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF+ P  CP+C +  VR              C    +C A+  E ++HFVSR A +IEG
Sbjct: 404 RPFTMPDHCPVCGAAAVRLEGE------VMRYCVNA-SCPARLREAVRHFVSRGAMDIEG 456

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
            G +  + F         I   ADI+ L         +I  + GFGD  + NL  SI   
Sbjct: 457 FGSRLAEQFVD----LGLIHSVADIYEL------DWERIRQLEGFGDKRIANLQASIEAS 506

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L R + +LGIRHVG   AR LA+++ S    A                L  +P  G
Sbjct: 507 KERPLSRLLHALGIRHVGERNARLLAQHFNSMDRIAAA----------SIEELQGIPGFG 556

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQR 663
            ++A+A+ +F++ P+N+  ++ L                V   +  K +V TG L+ + R
Sbjct: 557 RVVAEAVYDFFREPQNLALIQRLRAHGLRMTEADGDTAPVDGRLAGKTVVLTGRLESMTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +AQE + ++GA V++ +SRKTD +IVG +PGSK ++A++LGV+I++E+ FL LL 
Sbjct: 617 EQAQEALRRMGATVTSSVSRKTDFVIVGQDPGSKADRARELGVQILDEQAFLALLN 672


>gi|307152955|ref|YP_003888339.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 7822]
 gi|306983183|gb|ADN15064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7822]
          Length = 682

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/717 (32%), Positives = 378/717 (52%), Gaps = 53/717 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++ +  L  E+      YY    PI+ D+ YD L R  + +   +P+L     P+ P 
Sbjct: 7   EIQQRVEQLRSELQKASYAYYVLDNPIMEDAVYDQLYRELENLETQYPELI---TPDSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +++     V H IP  SLE  +N+E+  ++  R  R     +     +  E KID
Sbjct: 64  QRVGDKLSEQFTSVKHHIPLYSLENAFNLEEFTRWQERWQRI--APETKQFEYVCELKID 121

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G+ I + YE G  V    RGDG  GE+++  I+ I +IP  L S + P  +EVRGE ++ 
Sbjct: 122 GSAIALTYENGLLVRGVTRGDGVVGEEITQNIKTIRSIPLRLQSDHPPARVEVRGEAFLP 181

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS---EIF 250
             +F  +N E  A G   +ANPRNAA+G LR+L+P  +  R L FF + L       + +
Sbjct: 182 VEEFERINQEKAATGESLFANPRNAAAGTLRQLDPKIVDRRRLQFFAYTLYIVDTENQSY 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q+E L+ ++ +GF VN   +   +   +  YY    + R  LPY  DG+V K++++ 
Sbjct: 242 PQTQWESLEFLQKIGFLVNPNRKLCQSLEDVEQYYQHWDTRRRNLPYMTDGVVVKINDYD 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQKQLG   + PRW I+ K+A ++A TR+ +I + +GRTG +TP+A +EPV + G  +  
Sbjct: 302 LQKQLGFTQKFPRWAIALKYAAEEAPTRVKNITVNVGRTGAVTPMAIMEPVQLAGTTVQK 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +  L           DIRVGD V++++AGE+IP+VV +I   R  + QP+  
Sbjct: 362 ATLHNSDRVAQL-----------DIRVGDTVIIRKAGEIIPEVVRVISELRPANTQPYQM 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR          A  RC    +C A     L H+ SRDA +I GLG++ 
Sbjct: 411 PTHCPECNSTLVRPKGE------AVTRCVNS-SCPAILRGSLVHWCSRDALDIRGLGEKV 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    ++E     ++   D++ L+  Q  S  ++         S  NL ++INK +    
Sbjct: 464 VILLIENE----LVKSIVDLYGLKAEQIASLERMGT------KSANNLVNAINKSKQQPW 513

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++ LGIR+VG   A+ L   + + +  ++            + SL  V  +G  IAQ
Sbjct: 514 SRVLYGLGIRYVGNVTAKILTDNFPTVEQLSRA----------SFASLESVYGIGSEIAQ 563

Query: 611 AIVEFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++++   N+  V+ L +       +       ++  + ++ K  V TGTL  ++R++
Sbjct: 564 SVSDWFKIEANLTLVKQLQQAGLQFETATVTKNTSESTPTPLKGKTFVITGTLPSLKRNE 623

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           AQ+ + + G  V+  +S KTD ++VG++ GSKL KAQQLG+  ++EE  L ++Q  N
Sbjct: 624 AQQLIEEAGGKVTGSVSAKTDYLVVGEDAGSKLAKAQQLGIIQLSEEALLAMIQGKN 680


>gi|226224361|ref|YP_002758468.1| DNA ligase [Listeria monocytogenes Clip81459]
 gi|254781359|sp|C1KW57|DNLJ_LISMC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225876823|emb|CAS05532.1| Putative DNA ligase [Listeria monocytogenes serotype 4b str. CLIP
           80459]
          Length = 671

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 364/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRDKVG----DDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 QH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +                        K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|121611375|ref|YP_999182.1| DNA ligase [Verminephrobacter eiseniae EF01-2]
 gi|166216275|sp|A1WRA7|DNLJ_VEREI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121556015|gb|ABM60164.1| DNA ligase, NAD-dependent [Verminephrobacter eiseniae EF01-2]
          Length = 693

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/723 (34%), Positives = 384/723 (53%), Gaps = 50/723 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
                +   QA   + +L +++ +    Y+    P + D+EYD   +   A+  A P L 
Sbjct: 9   PDPAQMDPAQADARIRALREQLVHWAHQYHVLDAPSVPDAEYDRAFQALQALEAAHPALI 68

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKD-D 123
               P+ P  ++ G +   L  V H++P LS++   +      + F  R+ R     D D
Sbjct: 69  ---TPDSPTRRVQGAVLQGLTPVRHALPMLSIQTETDTGAGGAQAFDARVRRELGLTDAD 125

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
            +I + +EPK DG  + +RYE  + V AA RGDG  GEDV+  IR I  IP  L  + P 
Sbjct: 126 PAIEYVVEPKFDGLAMGLRYENRRLVQAATRGDGEIGEDVTHNIRTIRQIPLGLPDDAPA 185

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
           ++EVRGEVY+ + DF ALN    A   K + NPRNAA+G +R+L+      R L FF +G
Sbjct: 186 LLEVRGEVYMRRADFDALNQRQRAQSGKTFVNPRNAAAGAVRQLDANITAQRPLRFFAYG 245

Query: 243 LGKT-----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           LG            +  Y +LQ ++  GFPV   V  A+    + + + ++ + R  LPY
Sbjct: 246 LGAVTAPGEGGPAWRTHYALLQTLKSWGFPVAEQVGIAHGASQLAALHEQIGARRDALPY 305

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKV+   LQ+ LG + R PRW ++HK+  ++  TR+  I++Q+GRTG LTPVAR
Sbjct: 306 DIDGVVYKVNALQLQRDLGFKTREPRWAVAHKYPAQEMPTRVEGIELQVGRTGKLTPVAR 365

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L PV +GG  +TNATLHN   I+            + +RVGD V V+RAG+VIP+VV ++
Sbjct: 366 LAPVFVGGVTVTNATLHNLFEIRK-----------KQVRVGDTVTVRRAGDVIPEVVGVL 414

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
             +R      F  P+ CP+C S VVR+         A HRCTGGL C+AQ+ E L HF +
Sbjct: 415 PGQRSAYVANFRMPAHCPVCGSAVVREKGE------ANHRCTGGLFCAAQRKEALLHFAA 468

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A +IEGLG + +D    +E     +R   D++ L     ++  ++       + S  N
Sbjct: 469 RRALDIEGLGDKLVDQLVDAE----LVRGLPDLYRLDLVALSALDRMA------EKSAQN 518

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L D++ K R  +L RF+F LG+RHVG   A+ LA+++ +            A  N     
Sbjct: 519 LLDALEKSRQTTLPRFLFGLGLRHVGEATAKDLARHFGTLD----------AIMNASVEQ 568

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
           L++V  +G ++AQ++  F+Q P N   V       +    G   +  +  +  K +V TG
Sbjct: 569 LLQVSDIGPVVAQSLHCFFQQPHNREVVAQLRACGLRWPEGAPPERPAQRLAGKSVVLTG 628

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R  A++ +   GA V+  +S+KT  +I G   GSKL KA++LG+ +++E   L 
Sbjct: 629 TLPTLGRDAARDLLEAAGAKVTGSVSKKTSYLIAGAEAGSKLAKARELGIPVLDEAGMLA 688

Query: 717 LLQ 719
           LL 
Sbjct: 689 LLA 691


>gi|254993539|ref|ZP_05275729.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-064]
          Length = 665

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/707 (34%), Positives = 364/707 (51%), Gaps = 53/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRDKVG----DDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 QH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +                        K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|313637419|gb|EFS02883.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL S4-171]
          Length = 671

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 368/712 (51%), Gaps = 55/712 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N  DL  F  RI           I +  E KIDG 
Sbjct: 61  VGGEVLEGFQKVAHDTPMLSLANAFNKGDLADFDRRIRDKVG----EDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YEKGK+   A RGDG +GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+      +
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSD 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R       + +Y +E    R+ L YDIDG+V K+++   Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER  D +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGDEKPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CGSDLVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L + +     ++      G+ SVTNL  SI + +  SLE+ +F 
Sbjct: 457 HH----LIKDVADLFFLSKEKLLELERM------GEKSVTNLLASIEQSKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFETMDNLKLA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            N      ++        +    P +    +        K +V TG L+++ R+ A+  +
Sbjct: 557 ANEEVHDLLDELKRANVNMTYTGPKLENMSEE-ELVFAGKTVVLTGKLEQLTRNDAKALI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LG  VS  +S+KTD+++ G + GSKL KA++L + I +E   +  L    
Sbjct: 616 ESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYLPDEG 667


>gi|332852097|ref|ZP_08433924.1| DNA ligase [Acinetobacter baumannii 6013150]
 gi|332867495|ref|ZP_08437648.1| DNA ligase [Acinetobacter baumannii 6013113]
 gi|332872654|ref|ZP_08440622.1| DNA ligase [Acinetobacter baumannii 6014059]
 gi|332729469|gb|EGJ60808.1| DNA ligase [Acinetobacter baumannii 6013150]
 gi|332733912|gb|EGJ65057.1| DNA ligase [Acinetobacter baumannii 6013113]
 gi|332739183|gb|EGJ70042.1| DNA ligase [Acinetobacter baumannii 6014059]
          Length = 683

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/719 (35%), Positives = 380/719 (52%), Gaps = 47/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   
Sbjct: 6   MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 63  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP---NQKVQYEVE 119

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 120 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 180 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 239

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 240 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 300 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 360 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 408

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 409 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 462

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T       I   G+ SV NL D+I   +
Sbjct: 463 GDRWVESLLRLD----LLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASK 514

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +         +             P VGD
Sbjct: 515 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEALKKT----------PDVGD 564

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L                  +  +  V TGTL+++ R +A
Sbjct: 565 ITAEWIADFFLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 623

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 624 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTL 682


>gi|229917963|ref|YP_002886609.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
 gi|229469392|gb|ACQ71164.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
          Length = 664

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/710 (33%), Positives = 383/710 (53%), Gaps = 52/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  + +  L Q ++ +   YY   +P + DSEYD L      I   +P+L     P+ P 
Sbjct: 2   EMAERVEELRQTLNQYGYEYYVLDRPSVPDSEYDRLMNELIQIETDYPEL---RTPDSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG    +  KVTH  P LSL  +++ E+L +++ RI +           F  E K D
Sbjct: 59  QRVGGAPLDAFVKVTHDTPMLSLGNVFSKEELVEWVERIEKDLGYTP----TFVAELKFD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  ++++YE G+ V  A RGDG +GED++  ++ I +IP  L+ ++    EVRGE Y+ K
Sbjct: 115 GLAVSLKYENGRLVRGATRGDGTTGEDITQNLKTIRSIPLRLNEDV--TFEVRGEAYMPK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LNDE   +G   +ANPRNAA+G LR+L+      R L FF +GL    ++ A   
Sbjct: 173 RSFEQLNDERERIGEPLFANPRNAAAGSLRQLDSKIAASRNLAFFAYGLVSQDDLVA-SH 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  ++ LG  V+       T   +  Y     + RS LPY+IDG+V KV  +  Q+Q
Sbjct: 232 DESLDYLKRLGVAVSGDYTTCQTADELWDYIETYVTKRSDLPYEIDGIVIKVAGYEEQEQ 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW +++KF  ++  T + D+D  +GRTG +TP AR  PV++ G+ +T ATLH
Sbjct: 292 LGFTAKSPRWAVAYKFPAEEVVTTIEDVDFSVGRTGKVTPRARFAPVSVAGSTVTYATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED+IK            +D+ +GDRV++K+AG+VIP VV  + +ER  + +   FP+ C
Sbjct: 352 NEDFIK-----------EKDLHIGDRVVIKKAGDVIPAVVSALASERSGEERVIEFPTHC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S ++R          A HRC     C AQ LE L HFVSR A NI+GLG++ +   
Sbjct: 401 PACGSELIRLEGE------ADHRCVNP-ECPAQLLEGLIHFVSRQAMNIDGLGEKVITQL 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +    A  +   AD++ L R       ++      G+ SVTNL  +I + +  SLER +
Sbjct: 454 HE----AGLVHNVADLYRLDRDDLLGLERM------GETSVTNLLSAIEQSKQNSLERVL 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG + A  +A+ + +       ++ IIA   ++  S   +  +G  +A++IV 
Sbjct: 504 FALGIRLVGQKAASLIAERFET-------MDAIIAATVEELTS---IDGIGTKMAESIVL 553

Query: 615 FYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +++ P     V+        +S    +      + +  K +V TG L ++ R +A + + 
Sbjct: 554 YFEKPEARELVKELAESGVNLSFKGMKRPTTEGAPLSGKTVVLTGKLHEMTRGEAGKQLE 613

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            LGA V+  +S+ TD+++ G+  GSKL KA+ LG+++ +E + L  L+++
Sbjct: 614 LLGASVTGSVSKNTDLLVAGEKAGSKLAKAESLGIEVWDEAKLLDFLKEH 663


>gi|290893414|ref|ZP_06556399.1| DNA ligase [Listeria monocytogenes FSL J2-071]
 gi|290557065|gb|EFD90594.1| DNA ligase [Listeria monocytogenes FSL J2-071]
          Length = 671

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 365/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRDKVG----DDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER  + +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGNEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 QH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +                        K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|325838923|ref|ZP_08166729.1| DNA ligase (NAD+) [Turicibacter sp. HGF1]
 gi|325490664|gb|EGC92975.1| DNA ligase (NAD+) [Turicibacter sp. HGF1]
          Length = 662

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/708 (35%), Positives = 380/708 (53%), Gaps = 53/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ ++  YY   KP + D EYD L +    +    P+L  +     P  +
Sbjct: 3   KLRIEELTKLLTQYNHEYYVLDKPSVSDREYDRLMQELMELEEKHPELKSN---TSPTVR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K+ H  P LSL   +N  DLR F TR+ +   K       +  E KIDG 
Sbjct: 60  VGGKVLEGFNKIEHEKPMLSLSNAFNEGDLRDFDTRVKKVSPK-----ATYVCELKIDGL 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y  G FV  A RGDG  GED+S  ++ I TIP  ++ N P  +EVRGEVY+SK  
Sbjct: 115 AVTLHYNNGAFVKGATRGDGVIGEDISENLKTIKTIPLHINNNQP--LEVRGEVYMSKAT 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
              LN+E  A G + +ANPRNAA+G LR+L+      R L  F + +   +++      E
Sbjct: 173 LEKLNEERAAKGEELFANPRNAAAGSLRQLDSRIAAKRNLAMFCYAVPSAADLGCTTHEE 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQK+  LGF VN   +       ++ Y N   + R  LPY+IDG+V KV++   Q +LG
Sbjct: 233 SLQKISELGFNVNPNRQVCENIDEVLEYINRWTNARFDLPYEIDGIVIKVNQLQEQDKLG 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T L DI   +GRTG++TP A LEPV + G  ++ ATLHNE
Sbjct: 293 NTVKSPRWAIAYKFPAEEVETILTDIIFTVGRTGMVTPNAVLEPVRVAGTRVSRATLHNE 352

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DY+             RDIR+ DRV++++AGE+IP+VV  +++ R+ D  PF   S CP 
Sbjct: 353 DYVTS-----------RDIRINDRVIIRKAGEIIPEVVKPVIDARNGDEIPFEMISTCPR 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR+         A + C   + C A+ +E L HFVSRDA NI+GLG + ++  F+
Sbjct: 402 CSSELVREAGE------ADYYCLN-IDCPARIVESLSHFVSRDAMNIDGLGIKVVEQLFE 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I   ADI+ L + Q     ++      GD   TNL ++I   +  SLE+ +F 
Sbjct: 455 HK----LIENVADIYRLTKEQLLPLERM------GDKKATNLLNAIEASKENSLEKLLFG 504

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ A+ LA  +       + +++++    DD+     V  VGD+IA +IV ++
Sbjct: 505 LGIRHVGSKTAKVLATQF-------ENMDSLMDAKFDDFKV---VAEVGDVIANSIVHYF 554

Query: 617 QNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
               N+  +  L +       +     + N       K +V TGTL+ + R +A   +  
Sbjct: 555 SQTANVELINQLKELGLNMSYKGARLADANTEHVFFGKTVVLTGTLETLSRKEAGIKLES 614

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           LGA VS  +S  TD +I G   GSKL KAQQLGV +++E  FL ++ +
Sbjct: 615 LGAKVSGSISSNTDYLIAGAKSGSKLTKAQQLGVTVLDEATFLSMMNE 662


>gi|169634132|ref|YP_001707868.1| DNA ligase [Acinetobacter baumannii SDF]
 gi|169152924|emb|CAP01965.1| DNA ligase [Acinetobacter baumannii]
          Length = 691

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/719 (35%), Positives = 379/719 (52%), Gaps = 47/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  ++   
Sbjct: 14  MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQA--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 71  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP---NQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T       I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLLRLD----LLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +         +             P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEALKKT----------PDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L                  +  +  V TGTL+++ R +A
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTL 690


>gi|239501241|ref|ZP_04660551.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB900]
          Length = 678

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/719 (35%), Positives = 380/719 (52%), Gaps = 47/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   
Sbjct: 1   MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 58  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNKEDLFAFARRVEERLP---NQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T       I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLLRLD----LLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +         +             P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEALKKT----------PDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L                  +  +  V TGTL+++ R +A
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTL 677


>gi|91793866|ref|YP_563517.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
 gi|123165936|sp|Q12L82|DNLJ_SHEDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91715868|gb|ABE55794.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
          Length = 670

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 383/711 (53%), Gaps = 51/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + ++++L  E++ H+  YY    P + D+ YD L ++  A+    P+L +S   + 
Sbjct: 1   MSAIQLQIANLVNELNQHNIKYYVDDAPSVTDAYYDKLMQQLLALEAEHPELIQS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG       +VTH  P LSL+  +   D   F  RI          ++ +  EPK
Sbjct: 58  PSRRVGGHALDKFSQVTHLKPMLSLDNAFEQADFEAFNKRITDK-----VGTVDYVCEPK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  ++I Y  G+F  AA RGDG  GED++  +R I +IP  L  +  PE++EVRGEV+
Sbjct: 113 LDGLAVSITYRNGQFERAATRGDGTVGEDITENVRTIKSIPMGLRGDGYPELVEVRGEVF 172

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE--- 248
           + K  F ALN    A G K + NPRNAA+G LR+L+     +R L F+ + LG       
Sbjct: 173 MPKAAFDALNARQQAKGDKTFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGEVQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +  L +++  G PV+  V+  ++   + +YY+++ + R  L Y+IDG+V KV+ 
Sbjct: 233 PMEPSHFGQLAQLKRWGLPVSQEVKLCDSLEKVYAYYDDILNRRGQLSYEIDGVVIKVNA 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q  LG  A++PRW I++KF  ++  T L  +D Q+GRTG +TPVARL+ V +GG  +
Sbjct: 293 IPKQLSLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLQAVFVGGVTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            +++GD V+++RAG+VIP++V I+  +R  DAQ  
Sbjct: 353 SNATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPQDAQNI 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+CQS V R          A  RC+GGL C AQ+ E +KHF SR A NI+G+G 
Sbjct: 402 VFPTHCPVCQSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALNIDGMGD 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     ++ PAD+F L     T   ++         S T L  +I+  +  
Sbjct: 456 KIVEQLIDKE----LVQSPADLFGLTASMMTMLERMAM------KSATKLVAAIDAAKTT 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI+SLGIR VG   A +LA ++ S          + A        L+ V  VG+I+
Sbjct: 506 TLARFIYSLGIREVGEATAANLANHFKS----------LAAVREAGVEQLLEVADVGEIV 555

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667
           A+ I  F+    N+  V+ LL                  ++ +  V TGTL ++ R++A+
Sbjct: 556 AKHIRHFFDQAHNLEVVDKLLAAGINWPEITAVAEDELRLKGQTWVLTGTLTQLNRNEAK 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++E + L  L
Sbjct: 616 AQLQALGAKVAGSISKNTDCLVAGEAAGSKLAKAQELGVKVIDETELLVFL 666


>gi|260555699|ref|ZP_05827919.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606]
 gi|260410610|gb|EEX03908.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606]
          Length = 691

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/719 (35%), Positives = 380/719 (52%), Gaps = 47/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   
Sbjct: 14  MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 71  DSPTMKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP---NQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I+I YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 128 LKLDGLAISIWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T       I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLLRLD----LLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +         +             P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEALKKT----------PDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L                  +  +  V TGTL+++ R +A
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTL 690


>gi|238650378|ref|YP_002916230.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic]
 gi|257096313|sp|C4K0T1|DNLJ_RICPU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|238624476|gb|ACR47182.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic]
          Length = 689

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/712 (38%), Positives = 418/712 (58%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KV H +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGAKIANKFAKVMHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  +  N+PE +EVR
Sbjct: 120 -CEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKI-DNVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++               RC  GL C AQ  ER+ HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKLHYTPEDI------IIRCDNGLNCPAQNYERIHHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLARAFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++ L + ++      E    S + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIE-DYKETREQSSLTDKIVVFTGSLPTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|213156587|ref|YP_002318248.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
 gi|215484469|ref|YP_002326704.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
 gi|301347734|ref|ZP_07228475.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB056]
 gi|301512482|ref|ZP_07237719.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB058]
 gi|301594386|ref|ZP_07239394.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB059]
 gi|221222446|sp|A3M2U3|DNLJ_ACIBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254778154|sp|B7GZ71|DNLJ_ACIB3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254778155|sp|B7I790|DNLJ_ACIB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781253|sp|B0V8E4|DNLJ_ACIBY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193076578|gb|ABO11237.2| DNA ligase [Acinetobacter baumannii ATCC 17978]
 gi|213055747|gb|ACJ40649.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
 gi|213986610|gb|ACJ56909.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
          Length = 678

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/719 (35%), Positives = 380/719 (52%), Gaps = 47/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   
Sbjct: 1   MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 58  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP---NQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T       I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLLRLD----LLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +         +             P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEALKKT----------PDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L                  +  +  V TGTL+++ R +A
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTL 677


>gi|47092911|ref|ZP_00230693.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858]
 gi|254825997|ref|ZP_05230998.1| DNA ligase [Listeria monocytogenes FSL J1-194]
 gi|254853668|ref|ZP_05243016.1| DNA ligase [Listeria monocytogenes FSL R2-503]
 gi|254932796|ref|ZP_05266155.1| DNA ligase [Listeria monocytogenes HPB2262]
 gi|300765954|ref|ZP_07075926.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017]
 gi|47018737|gb|EAL09488.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858]
 gi|258607047|gb|EEW19655.1| DNA ligase [Listeria monocytogenes FSL R2-503]
 gi|293584349|gb|EFF96381.1| DNA ligase [Listeria monocytogenes HPB2262]
 gi|293595236|gb|EFG02997.1| DNA ligase [Listeria monocytogenes FSL J1-194]
 gi|300513340|gb|EFK40415.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017]
 gi|328466510|gb|EGF37653.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 1816]
 gi|328473899|gb|EGF44721.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 220]
 gi|332312198|gb|EGJ25293.1| DNA ligase [Listeria monocytogenes str. Scott A]
          Length = 671

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 364/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRDKVG----DDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 QH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIQASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +                        K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|144899097|emb|CAM75961.1| NAD-dependent DNA ligase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 693

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/717 (40%), Positives = 429/717 (59%), Gaps = 32/717 (4%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I I+AL+  +AR E S+L +++   D  Y+Q   P + D+ YDA K R  AI   FP+LA
Sbjct: 3   IEIDALTPFEARIEASALREKLIRWDLAYHQADAPEVDDATYDAAKLRLLAIEARFPELA 62

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
                  P  KIG        KV H +P LSL+  ++ +D+R+F  RI RF     D  I
Sbjct: 63  AG----SPTAKIGAPAAEGFGKVRHGVPMLSLDNAFSEDDVREFEGRIRRFLALPPDQII 118

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI---PTIPRVLSLNIPE 183
            F  EPKIDG  I++RYE G+FV AA RGDG  GEDV+A IR +     IP     + P+
Sbjct: 119 AFVAEPKIDGLSISLRYENGQFVRAATRGDGSEGEDVTANIRTLIRRGKIPERF-DDAPD 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           +IEVRGE+Y++K DFLALN    A G KP+ANPRNAA+G LR+LNP    +R L+ F + 
Sbjct: 178 LIEVRGEIYMTKADFLALNQRQEAAGDKPFANPRNAAAGSLRQLNPRVTASRELSTFFYA 237

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           LG+ + I     +E L ++   GFP     +   N    ++  Y  ++ +R++L +DIDG
Sbjct: 238 LGEHTTIKQNTHFEFLNQLTKWGFPCALQYISLYNNIDEMIQGYKNLQDLRASLDFDIDG 297

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
            VYKV+ F  Q++LG  +RSPRW I+HKF  +QA+T L  I+IQ+GRTG LTPVA L PV
Sbjct: 298 YVYKVNRFDWQQRLGFVSRSPRWAIAHKFPAEQATTLLERIEIQVGRTGALTPVAHLTPV 357

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           N+GG +++ A+LHNED I             + +R GD V+++RAG+VIP+VV +++++ 
Sbjct: 358 NVGGVVVSRASLHNEDEI-----------IRKGVREGDTVIIQRAGDVIPQVVGVVMDK- 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              A  F FP  CP+C S  VR  +          RC+GGLAC AQ  ERL+HFVSR+AF
Sbjct: 406 PRGAADFLFPDTCPVCGSHAVRTGDE------VIRRCSGGLACKAQVKERLRHFVSRNAF 459

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG + +DF  + E     I  PADIF L+        +++N  G+G+  V  L+ +
Sbjct: 460 DIEGLGDENIDFLCEGE----WINKPADIFRLEAANAGRLQRLQNYKGWGEKKVAKLFAA 515

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I  RR I+LER I++LGIR VG   A+ LA++Y S+  + + +   +   ND +  LI +
Sbjct: 516 ITARRTIALERLIYALGIRQVGEATAKRLARHYGSFAVWRESMLAAVPRENDSYHDLISI 575

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  +A  I+ F+    N+ A++ L  +++ +  +  +  +S +  K +VFTG L  +
Sbjct: 576 EDIGPAVANDILAFFAEDHNVAALDDLAAQLTINDAQKIEAGNSPVSGKSVVFTGELVAM 635

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A+     LGA V   +S+KTD ++ G   GSKL +A++LG+ +++E+Q+L L+
Sbjct: 636 TRAEAKAKAEMLGAKVVGSVSKKTDYVVAGPGAGSKLAEAEKLGLTVLSEQQWLELI 692


>gi|47095684|ref|ZP_00233291.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854]
 gi|254900737|ref|ZP_05260661.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes J0161]
 gi|254913778|ref|ZP_05263790.1| DNA ligase [Listeria monocytogenes J2818]
 gi|254938165|ref|ZP_05269862.1| DNA ligase [Listeria monocytogenes F6900]
 gi|284802202|ref|YP_003414067.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578]
 gi|284995344|ref|YP_003417112.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923]
 gi|47015969|gb|EAL06895.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854]
 gi|258610778|gb|EEW23386.1| DNA ligase [Listeria monocytogenes F6900]
 gi|284057764|gb|ADB68705.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578]
 gi|284060811|gb|ADB71750.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923]
 gi|293591794|gb|EFG00129.1| DNA ligase [Listeria monocytogenes J2818]
          Length = 671

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 365/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRDKVG----DDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  ++   + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 QH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKVA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +                        K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|239815926|ref|YP_002944836.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
 gi|239802503|gb|ACS19570.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
          Length = 694

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/716 (33%), Positives = 377/716 (52%), Gaps = 60/716 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +++  H   YY    P + D+EYD L +R  A+   +P+L     P+ P  ++GG++ 
Sbjct: 14  LSEQLHKHAHLYYVLDAPELPDAEYDRLFQRLQALEAEYPEL---RTPDSPTQRVGGKVL 70

Query: 84  LSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKKDDNS-IFFTLEPKIDGTMIT 140
               KV H +P LS+    +        F  R+ +     +D   + +  E K DG  + 
Sbjct: 71  EGFVKVRHKVPMLSIRTETDISPGGASAFDARVRKELGLAEDGPQVEYVCELKFDGLAMN 130

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           +RYE G  V AA RGDG  GE+V+  IR +  IP  L+   P ++EVRGE+Y+ + DF A
Sbjct: 131 LRYENGVLVQAATRGDGEVGEEVTQNIRTVREIPLRLNGKAPPVVEVRGEIYMKRADFEA 190

Query: 201 LNDEMIAV------GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-----SE 248
           LN+             K + NPRNAA+G +R+L+P     R L+FF +GLG+        
Sbjct: 191 LNERQREKIAAGQKNEKVFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGLGEVTPASEGG 250

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ LQ+    GFPV     +A     +++++  +   R  LPYDIDG+VYKVD 
Sbjct: 251 PEFPTQFDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYDIDGVVYKVDS 310

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++LG  +R PRW ++HK+  ++  T +L I++Q+GRTG LTPVA+L PV +GG  +
Sbjct: 311 IELQRRLGFVSREPRWAVAHKYPAQEQITEVLGIEVQVGRTGKLTPVAKLAPVFVGGVTV 370

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQ 426
           TNATLHNED  +            +D+RVGD+V+V+RAG+VIP+VV ++     R    +
Sbjct: 371 TNATLHNEDEARR-----------KDVRVGDKVIVRRAGDVIPEVVGVVPESLARPEGER 419

Query: 427 P--FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              F+ P  CP+C S  +R+           +RCTGGL C+AQ+ E + HF +R A +I+
Sbjct: 420 GLLFTMPHQCPVCGSEALREEGE------VDYRCTGGLFCAAQRKEAILHFAARRAVDID 473

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + ++    +      IR   D++ L         ++       D S  NL D++  
Sbjct: 474 GLGDKLVEQLVDAN----LIRTLPDLYKLGFATLAGLDRMA------DKSAKNLVDALEA 523

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+F LGIRHVG   A+ L+K++                       L+ V  V
Sbjct: 524 SKKTTLPRFLFGLGIRHVGESTAKDLSKHFGKLDAIMDASEE----------QLLEVNDV 573

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G ++AQ++  F+  P N   VE L    ++   G         +     V TGTL  + R
Sbjct: 574 GPVVAQSLRTFFDQPHNREVVEQLRACGLTWEEGEPAARAPKPLAGLTFVITGTLPTLSR 633

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A++ +   GA V+  +S+KT  ++ G+  GSKL+KA+++GV++++E + L LL 
Sbjct: 634 DEAKDKLEAAGAKVAGSVSKKTSYLVAGEEAGSKLDKAREIGVEVIDEARMLELLA 689


>gi|254832503|ref|ZP_05237158.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 10403S]
          Length = 671

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 365/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRDKVG----DDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  ++   + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKAIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 QH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKVA----------DKETLTNINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +                        K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|325570045|ref|ZP_08145970.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC
           12755]
 gi|325156873|gb|EGC69044.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC
           12755]
          Length = 687

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/730 (32%), Positives = 383/730 (52%), Gaps = 54/730 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           +K ++ I ++  S E  +     L  +++ +   YY   +P + D  YD L      I  
Sbjct: 4   LKNKEDIRMDVPSKE-IQSRAEELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIET 62

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +P L      + P  ++GG +     KVTH IP  SL  +++ E +  F  R+ +   K
Sbjct: 63  NYPQLVTE---DSPTQRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARVQKALGK 119

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
               ++ +  E KIDG  I+++YE+G+FV  A RGDG  GE+++  ++ + +IP  L L 
Sbjct: 120 ----AVDYVCELKIDGLSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIP--LKLK 173

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            P  +EVRGE Y+ K  FL LN +    G + +ANPRNAA+G LR+L+      R L+ F
Sbjct: 174 EPISLEVRGECYMPKASFLKLNQQREEEGVEVFANPRNAAAGSLRQLDTRIAAQRNLSTF 233

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ L     I A  Q+  L ++  LGF  N+  R  +T   + +Y  E    RS LPY+I
Sbjct: 234 LYTLADFGPIEANDQFSALNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPYEI 293

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+ F  Q  LG   ++PRW  ++KF  ++A T +  I+  +GRTG++TP A + 
Sbjct: 294 DGVVIKVNNFKDQDALGFTVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAVMT 353

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN D+IK            +DIR+GD V++ +AG++IP+V  ++  
Sbjct: 354 PVRVAGTTVSRASLHNVDFIKM-----------KDIRIGDSVIIYKAGDIIPEVAKVLEE 402

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   ++PF  P+ CP C S ++            A RC     C AQ  E L HFVSR+
Sbjct: 403 KRTETSEPFEAPTHCPECGSELIHLDEE------VALRCINP-KCPAQIKEGLSHFVSRN 455

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + L+  F      + ++  AD++ L   Q  +  KI+      + S  NL 
Sbjct: 456 AMNIDGLGPRVLEQMFDK----YLVKDVADLYFLTEEQLLTLDKIK------EKSANNLL 505

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I++ +  S+ER IF LGIRHVGA+ AR LA+++   +  ++     I          I
Sbjct: 506 RAIHQSKENSVERLIFGLGIRHVGAKAARILAEHFGDLRTLSKAKEEEI----------I 555

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVF 654
            +  +G  IA+++V ++ N      ++ L K               + V S  + K +V 
Sbjct: 556 SLETIGATIAESVVTYFDNQEVHDLLDELEKAGVNFAYLGLRTDQLEEVESPFKEKTVVL 615

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG L    R +A+E +  LG  V+  +S+KTDI++ G+  GSKL KAQ LGV + +E Q 
Sbjct: 616 TGKLSHFTREEAKERIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTVWDEAQM 675

Query: 715 LFLLQQYNTT 724
           +  ++  ++ 
Sbjct: 676 VAAIEGSHSA 685


>gi|46907988|ref|YP_014377.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|81565576|sp|Q71YR0|DNLJ_LISMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46881258|gb|AAT04554.1| DNA ligase, NAD-dependent [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 671

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 364/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRDKVG----DDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 QH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIQASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +                        K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFTGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|114563631|ref|YP_751144.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400]
 gi|122299383|sp|Q080K9|DNLJ_SHEFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114334924|gb|ABI72306.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400]
          Length = 670

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/715 (34%), Positives = 388/715 (54%), Gaps = 51/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + E+  L   I+ H+  YY    P I D+EYD L +R   +   +P     +  + 
Sbjct: 1   MHAIQTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELEGDYPQF---KSVDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG       ++TH  P LSL+  +   D   F  RI         +++ +  EPK
Sbjct: 58  PTQRVGGIALQKFAQITHLKPMLSLDNAFEQADFAAFNKRITDK-----VDNVDYVCEPK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG  GED++A +R I +IP  L     P+++EVRGEV+
Sbjct: 113 LDGLAVSITYRFGVLERAATRGDGSVGEDITANVRTIRSIPLKLRGEGFPDLVEVRGEVF 172

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE--- 248
           + K  F  LN   I+ G K + NPRNAA+G LR+L+     +R L F+ + LG       
Sbjct: 173 MPKAAFEVLNQRQISKGDKVFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGESQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 Y  L +++  G PV++ V+  ++   + +YY ++ + RS L Y+IDG+V KV++
Sbjct: 233 PMQTSHYGQLTQLQQWGVPVSSEVKVTDSLEKVYAYYADIMARRSALEYEIDGVVIKVND 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  A++PRW I++KF  ++  T L  +D Q+GRTG +TPVARL+P+ +GG  +
Sbjct: 293 IAKQQTLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLKPIFVGGVTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            +++GD V+++RAG+VIP++V I+  +R  DAQ  
Sbjct: 353 SNATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPDDAQDI 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+CQS V R          A  RC+GGL C AQ+ E +KHF SR A NI+G+G 
Sbjct: 402 IFPQHCPVCQSIVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALNIDGMGD 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     ++ PAD+F+L     T   ++         S TN+  +I + +  
Sbjct: 456 KIVEQLIDKE----LVKTPADLFSLTASSVTMLDRMAM------KSATNIVAAIKQAKTT 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+++  ++                   L+ V  VGDI+
Sbjct: 506 TLARFLYSLGIREVGEATAANLAQHFTEFERIRTA----------SVEQLLEVADVGDIV 555

Query: 609 AQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A+ I +F+  P NI  ++  L   ++  +          ++ +  V TGTL ++ R+ A+
Sbjct: 556 AKHIRQFFSQPHNIEVIDQLLEAGITWPVIEQADESQLSLKGQTWVLTGTLTQLNRNDAK 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             +  LGA V+  +S+ TD ++ G+  GSKL KA++LGVK+++E+  + LL   N
Sbjct: 616 AQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAEELGVKVIDEQALMDLLNAAN 670


>gi|217964094|ref|YP_002349772.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23]
 gi|254781360|sp|B8DFG5|DNLJ_LISMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217333364|gb|ACK39158.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23]
 gi|307571338|emb|CAR84517.1| DNA ligase, NAD-dependent [Listeria monocytogenes L99]
          Length = 671

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 364/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRDKVG----DDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 QH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +                        K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|85859410|ref|YP_461612.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
 gi|123738818|sp|Q2LTN8|DNLJ_SYNAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|85722501|gb|ABC77444.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
          Length = 672

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/711 (36%), Positives = 387/711 (54%), Gaps = 49/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E ARK +  L+  I YH+  YYQ   P I D+EYD+L +   A+   FP        
Sbjct: 2   MDAESARKNIEDLKARIEYHNRRYYQLDDPEISDAEYDSLLQELIALEKQFPQWLTE--- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IG           H  P LSL   ++ E++ +F  R+ RF    +   + F +E
Sbjct: 59  DSPSRRIGAAPLSKFAPAVHLSPMLSLANAFSEEEILEFDRRLKRFLDSSER--LSFVVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEV 187
           PKIDG  + + Y  G     A RGDG  GEDV+  IR + TIP  +       +PE IE+
Sbjct: 117 PKIDGVAVNLIYSSGVLTTGATRGDGAKGEDVTQNIRTLHTIPLKIQNGSDERLPEQIEI 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKT 246
           RGE+Y+    F  LN+  +A G  P+ANPRNAA+G LR+L+ +   R  L  F + +G  
Sbjct: 177 RGEIYMETAAFRKLNERRLAAGEPPFANPRNAAAGSLRQLDASITARRPLKMFCYAVGIV 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   +++L  ++  GF VN  +RQ       + +Y E++ +R+ LPY+IDG+V KV
Sbjct: 237 RGRAFTYHHDVLHALKKWGFSVNPFIRQVEGIEKCIEFYRELQDLRNELPYEIDGMVIKV 296

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ SLQ +LG  +RSPRW ++ KFA  QA+T + DI + +GRTG LTPVA + PV +GG 
Sbjct: 297 DDLSLQTRLGAVSRSPRWAVACKFAATQATTVIRDIIVNVGRTGTLTPVALMTPVKVGGV 356

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATLHN+D I             +DIR+GD VLV+RAG+VIP+VV +IV+ R     
Sbjct: 357 TVSRATLHNQDEI-----------DKKDIRIGDTVLVQRAGDVIPEVVKVIVSNRSGREI 405

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF  P  CP C S VVR          AAHRC G L+C AQ    ++HFVSR   +IEGL
Sbjct: 406 PFKIPDTCPECGSEVVRLAGE------AAHRCIG-LSCPAQLRRHIQHFVSRGGMDIEGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +      +     I  PAD++ L      +  ++       + SV+NL  +I   +
Sbjct: 459 GDKLVSQLVNQK----LIHDPADLYYLSHDALLNLERMA------EKSVSNLLSAIELSK 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + SL++ IF+LGIRHVG  I++ LA+ + +         N +          + +  +G 
Sbjct: 509 HPSLDKIIFALGIRHVGEHISKILARRFRTLDALINTTENEL----------LAIRDIGP 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            ++ +I+EF++N  N   +E L K+   S        S+ +  K  VFTG L ++ R +A
Sbjct: 559 EVSSSILEFFRNASNRRVIEKL-KKAGVSPLETISPRSAPLTGKTFVFTGALSRMTRDEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           ++ V  LG   +  +++KTD ++ G+  GSKL+KAQ+ G+ I++EE+FL L
Sbjct: 618 KQIVESLGGQAAGTVTKKTDYVVAGEAAGSKLQKAQKAGIAILSEEEFLRL 668


>gi|16803798|ref|NP_465283.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes EGD-e]
 gi|224499523|ref|ZP_03667872.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes Finland 1988]
 gi|224503316|ref|ZP_03671623.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL R2-561]
 gi|81508669|sp|Q8Y6D0|DNLJ_LISMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|16411212|emb|CAC99836.1| lmo1758 [Listeria monocytogenes EGD-e]
          Length = 671

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 365/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRDKVG----DDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  ++   + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKKCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 QH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKVA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +                        K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|254411541|ref|ZP_05025318.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420]
 gi|196182042|gb|EDX77029.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420]
          Length = 676

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/719 (32%), Positives = 369/719 (51%), Gaps = 55/719 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   ++ +  L   +      YY    P++ D+ YD L R    +   +P+L     P+ 
Sbjct: 1   MTNVKQRVQELRNLLQQASYAYYVRDNPMMEDAVYDQLYRELQDLESQYPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +       V H+IP  SLE  +N+E+L K+  R  R+    D  ++ +  E K
Sbjct: 58  PTQRVGEKPASEFSSVRHNIPLYSLENAFNLEELAKWQERWQRY--APDVKNVEYVCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192
           IDG+ I + Y+ G  V    RGDG +GED++  IR I +IP  LS    P I+EVRGE +
Sbjct: 116 IDGSAIALTYKDGVLVRGVTRGDGVTGEDITQNIRTIRSIPLRLSTETPPPIVEVRGEAF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF- 250
           +  + F  +N E  A G   +ANPRNAA+G LR+L+P  + R  L+FF + L        
Sbjct: 176 LPLDVFEGINREREAAGEALFANPRNAAAGTLRQLDPKIVDRRQLDFFAYTLHLPGSEEQ 235

Query: 251 -----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K Q+E L+ +R LGF VN   ++  +   +  YY    S R  LPY  DG+V K
Sbjct: 236 ETVPTLKSQWEALEFLRDLGFRVNPNRKRCASLAEVEEYYQYWDSQRRDLPYMTDGVVVK 295

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           ++ FSLQ+QLG   + PRW I+ K+  +++ T + ++ +Q+GRTG LTPVA L+PV + G
Sbjct: 296 LNSFSLQEQLGFTQKFPRWAIALKYPAEESPTLVQNVTVQVGRTGALTPVAELKPVQLAG 355

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ ATLHN D I+ L+           + +GD V+V++AGE+IP+VV ++   R P+A
Sbjct: 356 TTVSRATLHNRDRIEELN-----------LHLGDTVIVRKAGEIIPEVVRVLPELRPPEA 404

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P   P+ CP+C   VVR          A  RC    +C A     L H+ SR A +I G
Sbjct: 405 KPVQMPTDCPVCHQPVVRPPGE------AVTRCINA-SCPAIVKGSLNHWASRGALDING 457

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ ++    S      +   AD++ L         ++ N+   G+ S   L + I + 
Sbjct: 458 LGEKLVNQLVDS----GLVHSVADLYQLT------LDQLTNLERMGEKSAQKLINQIEQS 507

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
                 R ++ LGIR+VG   A+ LA+ + S    A                +  V  +G
Sbjct: 508 NTQPWSRVLYGLGIRYVGTVNAQILAQQFPSVDQLAAAR----------VTDIESVYGIG 557

Query: 606 DIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             IAQ++ ++++ P N   +    EA L+          +  S  ++ K  V TGTL  +
Sbjct: 558 SEIAQSVNDWFRVPSNQTLINRLREANLQLAGEPKVASAEAKSQPLQGKTFVITGTLPTL 617

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +R  A++ +   G  V++ +S KTD ++VG++ GSKLEKAQ+LG+  ++E   L  L +
Sbjct: 618 KRDDAKKLIQNAGGKVTSSVSSKTDYVLVGEDAGSKLEKAQELGINQISESDLLQWLNE 676


>gi|218710253|ref|YP_002417874.1| NAD-dependent DNA ligase LigA [Vibrio splendidus LGP32]
 gi|254782307|sp|B7VIK3|DNLJ_VIBSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218323272|emb|CAV19449.1| DNA ligase [Vibrio splendidus LGP32]
          Length = 670

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 386/709 (54%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  +  L  L + + YH   YY    P I D EYD L ++   I    P+L      + P
Sbjct: 3   ESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEDENPELVTV---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+      +VTH IP LSL+  ++ +DL  F  R+       +     F  EPK+
Sbjct: 60  SQRVGGQPLDGFTQVTHEIPMLSLDNAFSDDDLDAFNKRMSDRAPTANLE--TFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ Y  G  V AA RGDG +GE+++  +R I +IP  L     PE IEVRGEV++
Sbjct: 118 DGLAVSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
            K  F  LN+  +  G K + NPRNAA+G LR+L+      R L F+ + +G       +
Sbjct: 178 PKAGFDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAELS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y+   +++  G P+    +Q ++   + +YY ++ + R TL Y+IDG+V KVD+ + 
Sbjct: 238 NSHYQRFLQLKAWGLPMCPETKQLSSLEDVKAYYQDIMTRRDTLAYEIDGVVIKVDDIAA 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  ++NA
Sbjct: 298 QETLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L            ++VGD V+++RAG+VIP++V ++ + R   A+   FP
Sbjct: 358 TLHNADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 DACPVCNSAVERVEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S  N+  ++NK ++ +L 
Sbjct: 461 EQLVDREM----VETPADLFKLSAGVITVLDRM------GPKSAQNVVSALNKAKDTTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ + +      +            L+ V  +GDI+A  
Sbjct: 511 RFLYSLGIREVGEATAMNLAQHFKTLELVQAATHE----------QLVEVSDIGDIVASH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +  F+   +N   V+ L++     P+I     +    +E K +V TG+L K+ R +A+  
Sbjct: 561 LTSFFSQEKNRAVVDQLIELGVNWPAIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKAA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA V+  +S+KTDI+  G+  GSKL KAQ LG++I  EE  + L+
Sbjct: 621 LQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669


>gi|157964864|ref|YP_001499688.1| NAD-dependent DNA ligase LigA [Rickettsia massiliae MTU5]
 gi|166216234|sp|A8F2K5|DNLJ_RICM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157844640|gb|ABV85141.1| DNA ligase, NAD-dependent [Rickettsia massiliae MTU5]
          Length = 689

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/712 (38%), Positives = 419/712 (58%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S ++A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEKEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLNEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  +  N+PE +EVR
Sbjct: 120 -CEPKIDGLSFSAVYKNGVLTTGATRGDGYVGEDITANIKTIKNFPHKI-DNVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNREDLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTQLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D   
Sbjct: 358 VSRATLHNFQEIAR-----------KDVRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTAT 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKLHYMPEDI------IIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+   SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREVGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++ L + ++      E    S + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIE-DYKETREQSSLTDKIVVFTGSLPTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+A +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVTAGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|254781232|sp|B0VU02|DNLJ_ACIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 678

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/719 (35%), Positives = 379/719 (52%), Gaps = 47/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  ++   
Sbjct: 1   MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 58  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP---NQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVR
Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   + +     ++  ADI+ L   ++T       I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLLRLD----LLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +         +             P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEALKKT----------PDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L                  +  +  V TGTL+++ R +A
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTL 677


>gi|169831769|ref|YP_001717751.1| NAD-dependent DNA ligase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|254781311|sp|B1I551|DNLJ_DESAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169638613|gb|ACA60119.1| DNA ligase, NAD-dependent [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 672

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/710 (35%), Positives = 363/710 (51%), Gaps = 47/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+AR     L +EI YHD  YY    P+I D+EYD L R   A+  A+P+L     P
Sbjct: 1   MKPEEARARAEELRREIEYHDHRYYVLDDPVIEDAEYDRLVRELVALETAYPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG        V H  P LSL   +N  DL  F  R+        D  + + +E
Sbjct: 58  DSPTQRVGGRPREGFVTVQHRAPMLSLANAFNAADLADFDRRVRTGL---ADEDVDYVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            K DG  +++ YE G+ V  A RGDG +GE+++  +R I +IP  L     P +IEVRGE
Sbjct: 115 LKFDGVAVSLTYEHGRLVRGATRGDGVTGEEITPNLRTIRSIPLRLRQPGAPNVIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           VY+ K  F  LN+     G   +ANPRNAA+G LR+L+P     R L+ +++G+G T  I
Sbjct: 175 VYMPKEAFARLNERREDAGLPLFANPRNAAAGSLRQLDPGITAERKLDIWLYGIGYTDGI 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +   GF VN   R  +T   +  +    +  R  LPY IDGLV KVD  
Sbjct: 235 VFGRHSEALAWLGEQGFRVNPHTRIFSTLEEVERHLEHWREARFELPYVIDGLVLKVDRL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG   +SPRW +++K+  +QA T + DI I++GRTG+LTP A L PV + G  ++
Sbjct: 295 DQQERLGTTLKSPRWAVAYKYPPEQAETTVEDIIIRVGRTGVLTPTAVLSPVRLAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD VL+ +AG++IP+++     +R     PF+
Sbjct: 355 RASLHNEDLIR-----------EKDIRIGDVVLIHKAGDIIPEILGSRPEKRTGRETPFA 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S +VR              C+  +AC A+    L HFVSR+AF I GLG  
Sbjct: 404 MPVQCPECASLLVRPEGE------VGVYCSN-VACPARLERSLLHFVSRNAFAINGLGPA 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    +       +  PAD+FTL R +     +       G  S  NL  +I   +  S
Sbjct: 457 VIQQLLERR----LVADPADLFTLTREELVGLER------IGPKSADNLLKAIQNSKRNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R IFSLGIRHVG   AR LA+ + S           +            VP +G  IA
Sbjct: 507 LARLIFSLGIRHVGERAARLLAERFGSLAGLMAAGREELEA----------VPEIGPKIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQE 668
            +++ F+   +N   V  L++    ++           +  K  V TGTL++  R +A  
Sbjct: 557 DSVLNFFAREQNRRVVAKLVRAGVNTVADRPAAAGTGPLAGKTFVLTGTLEEFSRAEAAA 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + +LG  V + +SR+TD +++G NPG K +KA +LGV I+ E +F  LL
Sbjct: 617 RIEELGGRVVSNVSRRTDYVVLGKNPGGKYDKAVKLGVNIIEEPEFKRLL 666


>gi|126729669|ref|ZP_01745482.1| DNA ligase, NAD-dependent [Sagittula stellata E-37]
 gi|126709788|gb|EBA08841.1| DNA ligase, NAD-dependent [Sagittula stellata E-37]
          Length = 714

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/711 (41%), Positives = 436/711 (61%), Gaps = 15/711 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++ +QAR+EL +L   +   +  Y+    P + D+EYD LKRR   I   FP L  +
Sbjct: 16  VGQMTEDQAREELRALSDILGQANRAYHAEDAPELTDAEYDRLKRRNAEIEARFPQLKLA 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++G        KV H +  LSL   ++ +D+R F   I R+     D  + F
Sbjct: 76  ---DSPSEQVGAAPVDGFSKVRHEVRMLSLANAFDDDDIRDFDDSIRRYLGLGTDAPLAF 132

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  + +RYE GK V AA RGDG  GEDV+A  R I  IP  L+   PE++EVR
Sbjct: 133 TAEPKIDGLSLALRYENGKLVRAATRGDGSEGEDVTANARTIDDIPTDLT-GAPEVLEVR 191

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEVY+S  DF ALN+   A G K +ANPRNAA+G LR+L+      R L FF +  G  S
Sbjct: 192 GEVYMSHADFEALNERQTARGGKTFANPRNAAAGSLRQLDAKITAERPLKFFAYAWGVLS 251

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A+ Q   + ++  LGF  N      +    ++++Y ++++ R+TL YDIDG+VYKV+
Sbjct: 252 DPLAETQKGAIDRLNALGFQTNPLTALCDGPEEMLNHYRKVEAQRATLGYDIDGVVYKVN 311

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG +
Sbjct: 312 DLALQERLGFRSTTPRWAIAHKFPAELAWTRLESIDIQVGRTGALSPVARLTPVTVGGVV 371

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHNEDYI G D+SG  +RGG+DIR+GD V V RAG+VIPKV D+ +++R  DAQP
Sbjct: 372 VSNATLHNEDYIAGRDSSGNEIRGGKDIRIGDWVQVYRAGDVIPKVADVDLSQRPEDAQP 431

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP+ CP C S  +R+      +  A  RC+GGL C AQ +E+LKHFV R AF+IEGLG
Sbjct: 432 YVFPTKCPECGSDAIRE------EGDAVRRCSGGLICPAQAVEKLKHFVGRSAFDIEGLG 485

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +Q++ F+        IR P DIFTL+ R  +   +++N  G+G+ S  NL+ +I++RR+
Sbjct: 486 AKQVEQFYAD----GWIREPVDIFTLRDRYGSGIQQLKNREGWGEKSALNLFSAIDERRH 541

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           I L R IF LGIRHVG   +  LA++Y ++  F   + +      + W  L+ +  VG +
Sbjct: 542 IPLGRLIFGLGIRHVGESASNLLARHYGTWAIFEAAMKDAATMEGEAWDDLLSINGVGTV 601

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +AQ++V          +++ L+  +            S +  K +VFTG+L+++ R +A+
Sbjct: 602 LAQSLVSAMNQEAERASMDRLVAHLDVEEAVRPDTDGSPVAGKIVVFTGSLERMTRAEAK 661

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
                +GA VS  +S+KTDI+++G   GSK +KA++LG+ +++E+ +L L+
Sbjct: 662 ARAEAMGAKVSGSVSKKTDIVVIGPGAGSKEKKARELGLTVLDEDAWLELI 712


>gi|289435095|ref|YP_003464967.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171339|emb|CBH27881.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 671

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/712 (34%), Positives = 368/712 (51%), Gaps = 55/712 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N  DL  F  RI           I +  E KIDG 
Sbjct: 61  VGGEVLEGFQKVAHDTPMLSLANAFNKGDLADFDRRIRDKVG----EDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YEKGK+   A RGDG +GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+      +
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSD 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R       + +Y +E    R+ L YDIDG+V K+++   Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER  + +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGEEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CGSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L + +     ++      G+ SVTNL  SI + +  SLE+ +F 
Sbjct: 457 HH----LIKDVADLFFLSKEKLLELERM------GEKSVTNLLASIEQSKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFETMDNLKLA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            N      ++        +    P +    +        K +V TG L+++ R+ A+  +
Sbjct: 557 ANEEVHDLLDELKRANVNMTYTGPKLENMSEE-ELIFAGKTVVLTGKLEQLTRNDAKSLI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LG  VS  +S+KTD+++ G + GSKL KA++L + I +E   +  L    
Sbjct: 616 ESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYLPDEG 667


>gi|257454409|ref|ZP_05619671.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
 gi|257448175|gb|EEV23156.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
          Length = 675

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/714 (35%), Positives = 388/714 (54%), Gaps = 43/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++      ++  L  ++  H+  YY    P++ DSEYD L++   A+  A+P L +S   
Sbjct: 3   MNTAAITAQMRKLIAQLKQHNHAYYVLDNPLLEDSEYDQLRQELVALETAYPQLVQS--- 59

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P N++G +      +VTH IP LSL  ++  +DL+ F+ R+         N   + +E
Sbjct: 60  DSPTNQVGDKPLPFFTQVTHQIPMLSLGNLFTFDDLQNFMRRVNDRLADNQQNP-EYEVE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  +++ Y+ G+F  A  RGDG +GED++  +R I  +P  L+++IP  +EVRGEV
Sbjct: 119 LKLDGLAVSLLYQNGQFTQAVTRGDGQTGEDITQNVRTIRNLPLQLAIDIP-RLEVRGEV 177

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
            + K  F  LN +  A G K +ANPRNAA+G LR+L+P    +R L F+ + + +     
Sbjct: 178 LMPKAGFAKLNRDAQAKGEKTFANPRNAAAGSLRQLDPNIAKSRPLAFYAYSVNQGLPAE 237

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q + L  ++ LGF +++ ++   T   + +YY  +   RS LP++IDG V KV+  +
Sbjct: 238 ITTQSDALFWLKALGFSISD-IKIVQTAAQLQAYYQAVIEKRSHLPFEIDGTVIKVNSLA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  +R PRW  ++KF  +   TRL  I+ Q+GRTG LTPV +LEPVN+GG  ++N
Sbjct: 297 LQEQLGFLSREPRWATAYKFPAETVMTRLNAIEWQVGRTGQLTPVGKLEPVNVGGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN   I+ L           DIR GD V V RAG+VIPKV  +  +ER  +AQ  S 
Sbjct: 357 VTLHNIGEIQRL-----------DIRAGDMVSVHRAGDVIPKVTRVWTDERPANAQVVSL 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V+           A  RCTGGL C AQQ E L HFVSR A +I+GLG++ 
Sbjct: 406 PTHCPVCDSPVIMPEGE------ALARCTGGLFCPAQQQEALIHFVSRKAMDIDGLGERW 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L  FF+       ++  ADI+ L + +      + N+   G+ SV N+  +I K ++ +L
Sbjct: 460 LINFFEQ----GIVKNVADIYALSKHRDA----LINLEKLGEKSVENMLAAIEKSKDTTL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGI  VG   A +LA  +   Q         +             P VG+  A 
Sbjct: 512 PRFIFALGIGGVGESTAMNLAMQFGDLQPLMAASIEALQKT----------PDVGEKTAD 561

Query: 611 AIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I EF++   NI  +   L   +           +  ++ +  V TGTL+ + R +A+  
Sbjct: 562 SIFEFFRAEHNIEVINRLLQAGIHWQPVSQVPEGNQPLKGQSWVITGTLESMGRDEAKAK 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +  LGA VS  +S KT  ++ G+  GSKL  A++LGVK++ E QF  LL  Y+ 
Sbjct: 622 LQALGAKVSGSVSAKTTALLAGEKAGSKLANAEKLGVKVVTEAQFTDLLNTYHA 675


>gi|254829489|ref|ZP_05234176.1| DNA ligase [Listeria monocytogenes FSL N3-165]
 gi|258601904|gb|EEW15229.1| DNA ligase [Listeria monocytogenes FSL N3-165]
          Length = 671

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 364/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRDKVG----DDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  ++   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 QH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKVA----------DKETLTNINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +                        K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|16800936|ref|NP_471204.1| NAD-dependent DNA ligase LigA [Listeria innocua Clip11262]
 gi|81526387|sp|Q92AQ0|DNLJ_LISIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|16414371|emb|CAC97100.1| lin1870 [Listeria innocua Clip11262]
          Length = 671

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 364/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N +DL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVEHDTPMLSLANAFNRDDLADFDRRIRDKVG----DDISYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L       IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIPMKLKKAY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  +    + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSNLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGSEKPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 MH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKIA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +             +          K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|86148411|ref|ZP_01066703.1| DNA ligase [Vibrio sp. MED222]
 gi|85833825|gb|EAQ51991.1| DNA ligase [Vibrio sp. MED222]
          Length = 670

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 387/709 (54%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  +  L  L + + YH   YY    P I D EYD L ++   +    P+L      + P
Sbjct: 3   ESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKLEEENPELVTV---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+      +VTH IP LSL+  ++ +DL  F  R+       +     F  EPK+
Sbjct: 60  SQRVGGQPLDGFTQVTHEIPMLSLDNAFSDDDLDAFNKRMSDRAPTANLK--TFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ Y KG  V AA RGDG +GE+++  +R I +IP  L     PE IEVRGEV++
Sbjct: 118 DGLAVSLLYVKGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
            K  F  LN+  +  G K + NPRNAA+G LR+L+      R L F+ + +G       +
Sbjct: 178 PKAGFDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAELS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y+   +++  G P+    +Q ++   + +YY ++ + R TL Y+IDG+V KVD+ + 
Sbjct: 238 NSHYQRFLQLKAWGLPMCPETKQLSSLEDVKAYYQDIMTRRDTLAYEIDGVVIKVDDIAA 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  ++NA
Sbjct: 298 QETLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L            ++VGD V+++RAG+VIP++V ++ + R   A+   FP
Sbjct: 358 TLHNADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 DACPVCNSAVERVEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S  N+  ++NK ++ +L 
Sbjct: 461 EQLVDREM----VETPADLFKLSAGVITVLDRM------GPKSAQNVVSALNKAKDTTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ + +      +            L+ V  +GDI+A  
Sbjct: 511 RFLYSLGIREVGEATAMNLAQHFKTLELVQAATHE----------QLVEVSDIGDIVASH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +  F+   +N   V+ L++     P+I     +    +E K +V TG+L K+ R +A+  
Sbjct: 561 LTSFFSQEKNRAVVDQLIELGVNWPAIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKAA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA V+  +S+KTDI+  G+  GSKL KAQ LG++I  EE  + L+
Sbjct: 621 LQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669


>gi|315223456|ref|ZP_07865313.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287]
 gi|314946629|gb|EFS98620.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287]
          Length = 662

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/705 (33%), Positives = 375/705 (53%), Gaps = 49/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E++ H+  YY    P I D E+D   +   A+  A+P+     D N P  +
Sbjct: 2   KEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEF---YDENSPTVR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  S   V H     SL+  ++ EDL ++  RI +       + I FT E K DG 
Sbjct: 59  VGGSVTKSFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTLGS---DQINFTCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + YE GK   A  RGDG  G+D++A +R I ++P  L  + PE   +RGE+ + K  
Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E IA G  P+ NPRN ASG L+  +  ++  R L+  ++ L   + I  K Q+E
Sbjct: 176 FENLNKERIAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGNTGI--KSQFE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V N  +  ++   ++ + NE  + R TLPY+ DG+V KVD  + Q++LG
Sbjct: 234 SLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  +Q  T L  I  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNA 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+GD V V++ GE+IPK+V + +++R  DAQP  + + CP 
Sbjct: 354 DQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREVDAQPVKYITHCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR+         A H C     C  Q   +++HF+SR A +IEGLG++ ++  F+
Sbjct: 403 CGTELVRNEGE------AQHYCPNAYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFR 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I   AD++ +   +     ++         S  N+   I K + I  ER +F+
Sbjct: 457 ----AGIIHTYADLYEVTVEKLLPLERMAQ------KSAENIVKGIQKSKEIPFERVLFA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LA++Y + +          A  N     L+ V  +G+ IA +IV F+
Sbjct: 507 LGIRYVGETVAKKLARHYKTIE----------ALENATVEQLVEVDEIGNQIASSIVNFF 556

Query: 617 QNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  N   ++ L           +  +  +  ++    V +G      R + +  + Q G
Sbjct: 557 ADDYNRQLIDRLKGYGLQFSINEQATEGQTDTLKGLTFVVSGVFHLYSREELKALIEQHG 616

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F  ++
Sbjct: 617 GKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEFNAMI 661


>gi|317127163|ref|YP_004093445.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522]
 gi|315472111|gb|ADU28714.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522]
          Length = 670

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/717 (33%), Positives = 395/717 (55%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++E+  L   ++ +   YY   +P + D+EYD L      +  A+P+  R    
Sbjct: 1   MAKDDIKQEIDRLTNILNDYAYHYYVLDQPKVSDAEYDQLLHELTKLEEAYPEWKRD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      KV H +P LSL   +N E+LR F  R+ +       +   ++ E
Sbjct: 58  DSPSERVGGQPLEHFSKVQHDVPMLSLSNAFNEEELRDFDRRVRQGLG----HEPTYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +T++YE+G+FV  A RGDG  GED+++ ++ +P+IP  L   +   IEVRGE 
Sbjct: 114 LKIDGLAVTLKYEQGRFVQGATRGDGTVGEDITSNLKTVPSIPLRLKEAV--TIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  F+ LN+     G + +ANPRNAA+G LR+L+P     R L+ F++ +GK     
Sbjct: 172 FMPKRSFIRLNEAKEKNGEQLFANPRNAAAGSLRQLDPKIAAKRSLDIFIYSVGKVEGED 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +  L  ++ LGF  N   +   T   ++ Y     S R+ LPY+IDG+V KVD  +
Sbjct: 232 IPSHHGALNYVKELGFKTNEHQKHCKTIDEVIDYCESWLSKRADLPYEIDGIVIKVDALA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW  ++KF  ++  T LLDI++ +GRTG++TP A LEPV++ G  +  
Sbjct: 292 DQEQLGFTAKSPRWATAYKFPAEEVVTTLLDIELSVGRTGVITPTAILEPVSVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+ L           D+++GD+V +K+AG++IP+VV+++V +R  + + FS 
Sbjct: 352 ASLHNEDLIREL-----------DLKLGDKVTIKKAGDIIPEVVNVLVEQRTGEERDFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S ++R           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTQCPECHSELIRIEGE------VALRCVNP-KCPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F  +     I   AD++ L+R+   +  ++      G+ SV NL  +I   +  SL
Sbjct: 454 ITQLFNHK----LIEDVADLYKLERQLLLNLERM------GEKSVDNLLRAIEASKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVGA+ A++LA+++ +           +            +  VG+ +A 
Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQHFNTIDQIQNATREDLEA----------INEVGEKMAD 553

Query: 611 AIVEFYQNPRNICAV------EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+V +++ P     +      +  L+   P+I   +   ++    K +V TGT++++ R 
Sbjct: 554 AVVTYFETPEVKELISELEALDINLEYKGPNINVSDDANNAYFSGKTVVLTGTMEQMARG 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            A++ +   G  V+  +S KTD++I G+  GSKL+KAQ L ++I +E +FL  L + 
Sbjct: 614 DAKKEIEARGGNVTGSVSSKTDLLIAGEKSGSKLKKAQDLNIEIWDEARFLEELTKE 670


>gi|212634787|ref|YP_002311312.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3]
 gi|254781417|sp|B8CN91|DNLJ_SHEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212556271|gb|ACJ28725.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3]
          Length = 668

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/705 (34%), Positives = 380/705 (53%), Gaps = 50/705 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+  L Q+++ H+  YY    P I D EYD L +R   +    P+ A++   + P  ++G
Sbjct: 7   EILELTQQLNLHNYHYYVDDNPTIPDVEYDRLLKRLIELETQSPEFAKA---DSPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE      ++TH  P LSL+ +++  +   F +RI          ++ +  EPK+DG  +
Sbjct: 64  GEALAKFEQITHLKPMLSLDNVFDETEFNGFHSRITDKVGT----ALSYCCEPKLDGLAV 119

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           +I Y  G F  AA RGDG +GE+++  +R I +IP  L   N P ++EVRGEV +    F
Sbjct: 120 SIVYRDGVFERAATRGDGQTGENITENVRTIKSIPLKLRGDNFPPLVEVRGEVIMPHKAF 179

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI---FAKGQ 254
            ALN+   A G K + NPRNAA+G LR+L+     +R L F+ + LG         A   
Sbjct: 180 NALNERARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESWELADSH 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y  L+++R  G PV+  V+  ++   ++ YYN+++  RS+L ++IDG+V KV++ + Q  
Sbjct: 240 YGQLEQLRSWGVPVSQEVKVCDSVTEVMDYYNDIQQRRSSLDFEIDGVVLKVNQIAHQLS 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  ++NATLH
Sbjct: 300 LGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            ++VGD ++++RAG+VIP++V I+ ++R  DAQ   FP  C
Sbjct: 360 NADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAIVADKRPDDAQDIVFPERC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+G+G + ++  
Sbjct: 409 PVCDSEVERIEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     +  PAD+F L     T   ++      G  S T L  +I   +  +  RF+
Sbjct: 463 IDKE----LVESPADLFKLTASAMTMLERM------GMKSATKLVAAIEVAKETTFARFL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA Y+ +            A         I+V  VG I+A  +  
Sbjct: 513 YALGIREVGEATAANLAAYFKTLD----------ALKGASAEEFIKVDDVGAIVAAHLAH 562

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F   P N+  ++ L+          E       ++ +  V TGTL ++ R+ A+  +  L
Sbjct: 563 FLAQPHNLEVIDKLIAVGVSWPAIEEVAEEDLSLKGQTWVLTGTLTQLNRNDAKAQLQAL 622

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           GA V+  +S+ TD ++ G   GSKL KAQ+LGVK+++EE  + +L
Sbjct: 623 GAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDEEALIAIL 667


>gi|157828943|ref|YP_001495185.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933668|ref|YP_001650457.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. Iowa]
 gi|166216235|sp|A8GTF2|DNLJ_RICRS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359278|sp|B0BUZ1|DNLJ_RICRO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157801424|gb|ABV76677.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908755|gb|ABY73051.1| NAD-dependent DNA ligase [Rickettsia rickettsii str. Iowa]
          Length = 689

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/712 (38%), Positives = 420/712 (58%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  +  N+PE +EVR
Sbjct: 120 -CEPKIDGVSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKI-DNVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  AR+PR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARNPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKLHYTPEDI------IIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++ L + ++      E    S + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIE-DYKETREQSSLTDKIVVFTGSLPTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|114767408|ref|ZP_01446210.1| DNA ligase, NAD-dependent [Pelagibaca bermudensis HTCC2601]
 gi|114540493|gb|EAU43572.1| DNA ligase, NAD-dependent [Roseovarius sp. HTCC2601]
          Length = 757

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/757 (39%), Positives = 446/757 (58%), Gaps = 59/757 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +EALS +QAR EL  L   ++  +  Y+    P I D++YDALKRR  AI   FP+L 
Sbjct: 13  IDVEALSEDQARAELERLAGLLAQANLAYHTEDAPEISDADYDALKRRNVAIEERFPELK 72

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    + P  ++G  +     K+ H+   +SL   ++ +++R F   I R+    +D  +
Sbjct: 73  RE---DSPSEQVGAALAEGFGKIRHAQRMMSLSNAFDDDEVRDFDRGIRRYLGLAEDAPL 129

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G  + AA RGDG +GE+V+A  R I  IP+ L    PE++E
Sbjct: 130 PFTAEPKIDGLSLSLRYENGALIQAATRGDGATGENVTANARTIDDIPQQL-EGAPELLE 188

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN+   A G KP+ANPRNAA+G LR+L+P     R L FF +  G+
Sbjct: 189 VRGEVYMSHADFEALNERQEARGGKPFANPRNAAAGSLRQLDPEITRARPLKFFAYAWGE 248

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A+ Q + ++++  LGF  N   R  +    ++ +Y +++  R+TL YDIDG+VYK
Sbjct: 249 LSAPLAETQMDAIERLAQLGFQTNPLTRLCDGPQEMLDHYAQIEEQRATLGYDIDGVVYK 308

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 309 VNDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG 368

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI G DASG  +R G+DIRVGD V V RAG+VIPK+ D+ +++R   A
Sbjct: 369 VVVSNATLHNEDYIAGRDASGNPIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSKRPDGA 428

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P++FP  CP C S  +R+      +  A  RC+GGL C AQ +E++KHFVSR AF+IEG
Sbjct: 429 EPYAFPETCPECGSEAIRE------EGDAVRRCSGGLICPAQAVEKMKHFVSRSAFDIEG 482

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F++       I  PA+IFTL+ R  +   +++N  G+G+ S  NL+D+I+++
Sbjct: 483 LGAKQVEQFYRD----GWISEPAEIFTLRERYGSGLQQLKNREGWGEKSANNLFDAIDEK 538

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSY---------------------------- 577
           R I L R +FSLGIRHVG  +A  LA++YLS+                            
Sbjct: 539 RKIELGRVLFSLGIRHVGEVVANDLARHYLSWSAMIAAIDAARPAAERYRRAEQAVEAER 598

Query: 578 ----------------QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
                                E   +       W  L+ V  +G  +A ++V     P  
Sbjct: 599 VAAKSEGRRARLKEIRDAAWAEDPAVSTEARAAWDDLVGVDGIGQTVAVSLVTSMGQPTE 658

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
             +++ L+ ++            S +  K +VFTG+L+K+ R +A+     LGA VS  +
Sbjct: 659 RASIDRLVAQLDIQDAERPATDGSPVAGKTVVFTGSLEKMTRAEAKARAEALGAKVSGSV 718

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+KTDI++ G   GSK  KA++LGV++M+E+ +L L+
Sbjct: 719 SKKTDIVVAGPGAGSKEAKARELGVELMDEDAWLALI 755


>gi|229587074|ref|YP_002845575.1| NAD-dependent DNA ligase LigA [Rickettsia africae ESF-5]
 gi|254781406|sp|C3PLJ2|DNLJ_RICAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|228022124|gb|ACP53832.1| DNA ligase, NAD-dependent [Rickettsia africae ESF-5]
          Length = 689

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/712 (38%), Positives = 417/712 (58%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  +  N+PE +EVR
Sbjct: 120 -CEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKI-DNVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQDEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFVLQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKLHYTPEDI------IIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++ L   ++      E    S + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKKLGGILNIE-DYKETREQSSLTDKIVVFTGSLSTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++ G   GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVGAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|313632855|gb|EFR99806.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL N1-067]
          Length = 678

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 369/712 (51%), Gaps = 55/712 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 11  KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWI---TPESPSKR 67

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N +DL  F  RI           I +  E KIDG 
Sbjct: 68  VGGEVLEGFQKVAHDTPMLSLANAFNKDDLADFDRRIRDKVG----EDIAYMCELKIDGL 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YEKGK+   A RGDG +GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 124 AVSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+      +
Sbjct: 182 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSD 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R       + +Y +E    R+ L YDIDG+V K+++   Q+Q+G
Sbjct: 242 GLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 302 TTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNE 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER  + +PF  P  CP 
Sbjct: 362 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGEEEPFHMPKNCPT 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 411 CGSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 463

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI + +  SLE+ +F 
Sbjct: 464 HH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIEQSKQNSLEKLLFG 513

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 514 LGIRHVGAKAAKSLAIHFETMDNLKLA----------DKETLTSINDIGEKMADSIVTYF 563

Query: 617 QNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            N      ++        +    P +    +        K +V TG L+++ R+ A+  +
Sbjct: 564 ANEEVHDLLDELKRANVNMTYTGPKLENMSEE-ELIFAGKTVVLTGKLEQLTRNDAKSLI 622

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LG  VS  +S+KTD+++ G + GSKL KA++L + I +E   +  L    
Sbjct: 623 ESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYLPDEG 674


>gi|255026038|ref|ZP_05298024.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-003]
          Length = 671

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 364/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRDKVG----DDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKKCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 QH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKVA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +                        K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|1352292|sp|P49421|DNLJ_RHOMR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|607820|gb|AAA93198.1| DNA ligase [Rhodothermus marinus]
          Length = 712

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/722 (34%), Positives = 377/722 (52%), Gaps = 52/722 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +EA+  ++A    + L + ++ H   YY    P+I D++YD L +    +   FP+L  
Sbjct: 29  DLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV- 87

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI- 126
              P+ P  ++GG       KV H  P LSL   +  ED+R +  R  R   ++    + 
Sbjct: 88  --TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAERLGQPVQ 145

Query: 127 -FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-----LN 180
              T E KIDG  + + YE G     A RGDG  GE+V+  +R IP IP  +        
Sbjct: 146 PAVTAELKIDGLAMALTYENGVLSVGATRGDGIEGENVTQNVRTIPAIPLRIPVDPAVGP 205

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  +EVRGEVY+ K DF  LN+++ A G +P+ANPRNAA+G +R+LNP     R L+FF
Sbjct: 206 PPTRLEVRGEVYMRKRDFERLNEQLQARGERPFANPRNAAAGSVRQLNPQVTALRPLSFF 265

Query: 240 VHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G          QYE+LQ +  LGFPVN   R+      ++ Y       R  L Y+
Sbjct: 266 AYGIGPVEGAEVPDSQYEVLQWLGRLGFPVNEHARRFEHLDDVLEYCRYWTEHRDELDYE 325

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V K+D    Q  LG  + +PRW +++KF  ++A TRLLDI + +GRTG++ PVA L
Sbjct: 326 IDGVVLKIDHRPWQALLGAISNAPRWAVAYKFPAREAITRLLDIMVSVGRTGVVKPVAVL 385

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GG  ++ ATLHNEDY++            RDIR+GD V+V RAG+VIP+VV  +V
Sbjct: 386 EPVEVGGVTVSQATLHNEDYVRS-----------RDIRIGDLVVVIRAGDVIPQVVRPVV 434

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R  + +P+  P  CP C S++VR          A + C     C AQ +  L+HF  R
Sbjct: 435 EARTGNERPWRMPERCPSCGSQLVRLPGE------ADYYCVAS-DCPAQFVRLLEHFAGR 487

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           DA +IEG+G Q      +S      +R  +D++ L+         +  + GF +    NL
Sbjct: 488 DAMDIEGMGSQVARQLAES----GLVRPLSDLYRLKLED------LLKLEGFAETRARNL 537

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   +   L R +F LGIRHVG   A  L + + S    A    + +A         
Sbjct: 538 LRAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFASIDELAAATIDELAA-------- 589

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTG 656
             +  VG I A++I  +++   N   +E L +    +  +        S +  K  V TG
Sbjct: 590 --LEGVGPITAESIANWFRVEDNRRLIEELKELGVNTQRLPEEAPAAESPVRGKTFVLTG 647

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L  + R +A+E + + G  V++ +SR TD ++VG+NPGSK ++A+QLG+ +++E+  L 
Sbjct: 648 ALPHLTRKEAEELIKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLGIPMLDEDGLLR 707

Query: 717 LL 718
           LL
Sbjct: 708 LL 709


>gi|259047691|ref|ZP_05738092.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
 gi|259035882|gb|EEW37137.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
          Length = 668

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/706 (33%), Positives = 380/706 (53%), Gaps = 53/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ +  L+++++     YY   KP   D+EYD       A+    P+   +   + P  
Sbjct: 7   IQQRIEQLKEQLNRWSHEYYVEDKPTATDAEYDKAYHELLALEKEHPEFVTA---DSPTQ 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE+     KVTH+ P LSL   ++ EDL +F  R+ +   +    +I +  E KIDG
Sbjct: 64  RVGGEVLEQFQKVTHTNPMLSLSNAFSKEDLEEFDARLRKLTNR----AIEYVCELKIDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I + Y+ G+    A RGDG +GEDV+  +R I ++P  LSL  P  IEVRGE Y+ K 
Sbjct: 120 LSIALTYQNGQLQLGATRGDGTTGEDVTGNVRTIKSVP--LSLKEPWNIEVRGECYMPKK 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F+ALN      G + +ANPRNAA+G LR+L+P     R L+ F++      E+    Q 
Sbjct: 178 SFVALNKSREEEGLEVFANPRNAAAGSLRQLDPKIAAKRNLSVFLYSSPSVEELNVSTQE 237

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L+KM  +GF  N    +  T   + +Y   + + R  LPY+IDG+V KV++F+ Q+++
Sbjct: 238 ELLRKMAEIGFVTNPERLKCQTIDEVWNYIETIGAKRQELPYEIDGMVIKVNDFATQEEI 297

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++A T + D++  +GRTG++TP A ++PV + G  +  A+LHN
Sbjct: 298 GYTVKAPRWAIAYKFPAEEAQTVVRDVEWTVGRTGVVTPTAVMDPVQLAGTTVRRASLHN 357

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D +K            RDIR+ D V++ +AG++IP+V  +I+ +R   +QP+ FP+ CP
Sbjct: 358 IDLMK-----------ERDIRLEDTVVIHKAGDIIPEVTRVILEKRPATSQPYEFPTTCP 406

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C  ++    +        A RC     C AQ  E + HFVSR+A N+ G+G   +  FF
Sbjct: 407 VCHEKLEHLEDE------VAIRCLNP-KCPAQLTEGMSHFVSRNAMNMSGIGPSIIKQFF 459

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       +   AD++ L   Q     KI+        S  N+ ++I   +  SLER + 
Sbjct: 460 EE----GLVLDVADLYKLTLDQLLELDKIQQ------KSAENILEAIENSKANSLERLLT 509

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRHVG + A+ LA+++           N+ A        L+ +  +GDIIA ++  +
Sbjct: 510 GLGIRHVGTKAAKELAQHF----------ENMKALQEASIEQLLEIDGLGDIIAYSVKTY 559

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQEYV 670
           ++ P     ++ L           +    SE     +  K +V TGTL+++ R  A+E +
Sbjct: 560 FEQPSVQELIQELQDRGVNMSYLGKTKADSEASGHILSGKTVVLTGTLEQLTRQDAKEKL 619

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             LGA V+  +S+KTD++I G + GSKL+KA  LG+++ +E+QFL 
Sbjct: 620 ESLGAKVTGSVSKKTDVVIAGYSAGSKLDKANSLGIEVWSEQQFLD 665


>gi|157374877|ref|YP_001473477.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
 gi|190359288|sp|A8FU26|DNLJ_SHESH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157317251|gb|ABV36349.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
          Length = 670

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/712 (35%), Positives = 376/712 (52%), Gaps = 50/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   ++E+  L   ++ H+  YY    P + D+EYD L  R   +    P+L     P+ 
Sbjct: 1   MHAIQEEIKQLTSVLNEHNYRYYVDDAPSVPDAEYDRLINRLKQLEAENPELCL---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG       ++TH  P LSL+ +++ ++   F  RI      K   +  F  EPK
Sbjct: 58  PTQRVGGVALAKFNQITHLKPMLSLDNVFSEDEFDAFYKRISD----KTSETPTFCCEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  ++I Y  G +  AA RGDG  GED++  +R I +IP  L   + P ++EVRGEV 
Sbjct: 114 LDGLAVSILYRDGVYERAATRGDGSVGEDITENVRTIRSIPLKLRGSDFPPLLEVRGEVI 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE--- 248
           + K  F +LND   A G K + NPRNAA+G LR+L+     +R L F+ + LG       
Sbjct: 174 MPKKAFDSLNDRARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESW 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              KG +E L +++  GFPV++ V+       ++ YY ++   R  L Y+IDG+V KVD 
Sbjct: 234 PLGKGHHEQLMQLKSWGFPVSSEVKLCGDVKTVLDYYADILERREALDYEIDGVVIKVDS 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q QLG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  +
Sbjct: 294 IEHQLQLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            ++VGD V+V+RAG+VIP+VV I+  +R   A   
Sbjct: 354 SNATLHNADEIARL-----------GVKVGDTVIVRRAGDVIPQVVAIVAEKRPVSANDI 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+C S V R          A  RCTGGL C AQ+ E +KHF SR A N++G+G 
Sbjct: 403 LFPQTCPVCDSMVERTEGE------AVARCTGGLFCEAQRKEAIKHFASRKALNVDGMGD 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L     T   ++      G  S T L  +I   +  
Sbjct: 457 KVVEQLIDKE----LVASPADLFRLTASAMTMLDRM------GMKSATKLVAAIEDAKQT 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF++ LGIR VG   A +LA Y+ +               + D    I+V  VG I+
Sbjct: 507 TFARFLYGLGIREVGEATAANLANYFKNLDKLK----------SADADEFIKVDDVGAIV 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667
           AQ +  F+  P N+  V+ L++         E    +  ++ +  V TGTL K+ R+ A+
Sbjct: 557 AQHLTYFFAQPHNLEVVDNLVQAGVHWPEIEEVAEEALSLKGQTWVLTGTLTKLNRNDAK 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+ TD ++ G+  GSKL KAQ LGVK+++E+  L +L 
Sbjct: 617 AQLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQDLGVKVLDEDGLLAVLA 668


>gi|256820386|ref|YP_003141665.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271]
 gi|256581969|gb|ACU93104.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271]
          Length = 662

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/705 (33%), Positives = 375/705 (53%), Gaps = 49/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E++ H+  YY    P I D E+D   +   A+  A+P+     D N P  +
Sbjct: 2   KEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEF---YDENSPTVR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  S   V H     SL+  ++ EDL ++  RI +       + I FT E K DG 
Sbjct: 59  VGGSVTKSFPTVIHEYRMYSLDNSYSKEDLEEWEQRIIKTLGS---DQINFTCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + YE GK   A  RGDG  G+D++A +R I ++P  L  + PE   +RGE+ + K  
Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F +LN E  A G  P+ NPRN ASG L+  +  ++  R L+  ++ L   + I  K Q+E
Sbjct: 176 FESLNKERTAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGNTGI--KSQFE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V N  +  ++   ++ + NE  + R TLPY+ DG+V KVD  + Q++LG
Sbjct: 234 SLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  +Q  T L  I  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNA 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+GD V V++ GE+IPK+V + +++R  DAQP  + + CP 
Sbjct: 354 DQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVKYITHCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR+         A H C     C  Q   +++HF+SR A +IEGLG++ ++  F+
Sbjct: 403 CGTELVRNEGE------AQHYCPNAYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFR 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I   AD++ +   +     ++         S  N+   I K + I  ER +F+
Sbjct: 457 ----AGIIHTYADLYEVTVEKLLPLERMAQ------KSAENIVKGIQKSKEIPFERVLFA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LA++Y + +          A  N     L+ V  +G+ IA +IV F+
Sbjct: 507 LGIRYVGETVAKKLARHYKTIE----------ALENATIEQLVEVDEIGNQIASSIVNFF 556

Query: 617 QNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  N   ++ L           +  +  +  ++    V +G      R + +  + Q G
Sbjct: 557 ADDYNRQLIDRLKGYGLQFSINEQATEGQTDTLKGLTFVVSGVFHLYSREELKALIEQHG 616

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F  ++
Sbjct: 617 GKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEFNAMI 661


>gi|27262356|gb|AAN87459.1| NAD-dependent DNA ligase [Heliobacillus mobilis]
          Length = 677

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/708 (33%), Positives = 377/708 (53%), Gaps = 48/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A   +  L + I +H+  YY    P I D++YDAL R   AI   +P+L  +   + P 
Sbjct: 16  EAEVRVKELREIIRHHEYRYYVLDAPEITDADYDALMRELQAIEDTYPELVEA---DSPT 72

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG+   +   V H +P LSL   ++  DLR+F  R      +     + + +EPKID
Sbjct: 73  RRVGGQPLAAFNSVRHRVPLLSLANAFDEHDLREFDRRARERAGR----DLTYVVEPKID 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE+G+FV  A RGDG +GED++  ++ I TIP  L  ++P +++VRGE Y+ K
Sbjct: 129 GLTVVLTYEQGRFVRGATRGDGETGEDITENLKTIRTIPLRLKTDLP-VLDVRGEAYLPK 187

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN+E    G   +ANPRNAA+G LR+L+P    +R L  F + +       A+ Q
Sbjct: 188 GAFATLNEEREERGEPVFANPRNAAAGSLRQLDPKVTASRPLRAFFYNILLLEGAEAQEQ 247

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            + L+ +   G PVN   +   +   +++Y       R  LP++IDG+V KV+E    ++
Sbjct: 248 RQALELIEQWGLPVNKERKFCLSIEEVIAYCRYWTEHRHDLPFEIDGMVVKVNELDEYER 307

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPR+ I+ KF  +QA T++  I +++GRTG++TP A LEPV + G  ++ ATLH
Sbjct: 308 LGVTSKSPRYAIAFKFPAEQAVTQVRSITVKVGRTGVITPTAELEPVRVAGTTVSRATLH 367

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I+            +DI VGD V++++AG++IP+VV ++   R  + QPFS P  C
Sbjct: 368 NEDIIR-----------EKDIHVGDYVIIQKAGDIIPEVVSVLKERRTGEEQPFSMPQAC 416

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S   R           A RCT    C AQ  E L H+ SRDA NIEGLG   ++  
Sbjct: 417 PECGSPASRLEGE------VALRCT-SSTCPAQAKEGLIHYASRDAMNIEGLGPAIVNLL 469

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           + +      +  PAD++ L   Q     ++      G  S  NL  +I + ++  L  F 
Sbjct: 470 WDT----GLVHNPADLYDLTVDQVAPLERM------GKKSAANLIAAIEQSKSRGLAAFT 519

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LG+R VG   A++LA ++ S +         +            +P +G  +A ++  
Sbjct: 520 FALGLRLVGQTAAKTLASHFGSMEKLMAATQEELQA----------IPEIGPKMADSLKN 569

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++  P N+  +  L+++      +    +    +  K +V TGTLQ + R +AQ  +   
Sbjct: 570 YFSIPANVEMILRLVEKGVQMNAQQSTVDSPQTLAGKMIVLTGTLQSMDRREAQRLLEAR 629

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           GA +S+ +S+KT ++I G+  GSKLEKA +L V ++ EE FL L+  +
Sbjct: 630 GAKISSSVSKKTSMVIAGEEAGSKLEKALELKVPVLREEDFLKLIDHH 677


>gi|15893019|ref|NP_360733.1| NAD-dependent DNA ligase LigA [Rickettsia conorii str. Malish 7]
 gi|81527939|sp|Q92GM7|DNLJ_RICCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15620219|gb|AAL03634.1| DNA ligase [Rickettsia conorii str. Malish 7]
          Length = 689

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/712 (38%), Positives = 419/712 (58%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  +  N+PE +EVR
Sbjct: 120 -CEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKI-DNVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKLHYTPEDI------IIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I    DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLIDK----GLISNLLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLKNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++ L + ++      E    S + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIE-DYKETREQSGLTDKIVVFTGSLPTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|268316781|ref|YP_003290500.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252]
 gi|262334315|gb|ACY48112.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252]
          Length = 712

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/722 (34%), Positives = 377/722 (52%), Gaps = 52/722 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +EA+  ++A    + L + ++ H   YY    P+I D++YD L +    +   FP+L  
Sbjct: 29  DLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV- 87

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI- 126
              P+ P  ++GG       KV H  P LSL   +  ED+R +  R  R   ++    + 
Sbjct: 88  --TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAERLGQPVQ 145

Query: 127 -FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-----LN 180
              T E KIDG  + + YE G     A RGDG  GE+V+  +R IP IP  +        
Sbjct: 146 PAVTAELKIDGLAMALTYENGVLTVGATRGDGIEGENVTQNVRTIPAIPLRIPVDPAVGP 205

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  +EVRGEVY+ K DF  LN+++ A G +P+ANPRNAA+G +R+LNP     R L+FF
Sbjct: 206 PPTRLEVRGEVYMRKRDFERLNEQLQARGERPFANPRNAAAGSVRQLNPQVTALRPLSFF 265

Query: 240 VHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G          QYE+LQ +  LGFPVN   R+      ++ Y       R  L Y+
Sbjct: 266 AYGIGPVEGAEVPDSQYEVLQWLGRLGFPVNEHARRFEHLDDVLEYCRYWTEHRDELDYE 325

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V K+D    Q  LG  + +PRW +++KF  ++A TRLLDI + +GRTG++ PVA L
Sbjct: 326 IDGVVLKIDHRPWQALLGAISNAPRWAVAYKFPAREAITRLLDIMVSVGRTGVVKPVAVL 385

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GG  ++ ATLHNEDY++            RDIR+GD V+V RAG+VIP+VV  +V
Sbjct: 386 EPVEVGGVTVSQATLHNEDYVRS-----------RDIRIGDLVVVIRAGDVIPQVVRPVV 434

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R  + +P+  P  CP C S++VR          A + C     C AQ +  L+HF  R
Sbjct: 435 EARTGNERPWRMPERCPSCGSQLVRLPGE------ADYYCVAS-DCPAQFVRLLEHFAGR 487

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           DA +IEG+G Q      +S      +R  +D++ L+         +  + GF +    NL
Sbjct: 488 DAMDIEGMGSQVARQLAES----GLVRRLSDLYRLKLED------LLKLEGFAETRARNL 537

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   +   L R +F LGIRHVG   A  L + + S    A    + +A         
Sbjct: 538 LRAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFASIDELAAATIDELAA-------- 589

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTG 656
             +  VG I A++I  +++   N   +E L +    +  +        S +  K  V TG
Sbjct: 590 --LEGVGPITAESIANWFRVEDNRRLIEELKELGVNTQRLPEEAPAAESPVRGKTFVLTG 647

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L  + R +A+E + + G  V++ +SR TD ++VG+NPGSK ++A+QLG+ +++E+  L 
Sbjct: 648 ALPHLTRKEAEELIKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLGIPMLDEDGLLR 707

Query: 717 LL 718
           LL
Sbjct: 708 LL 709


>gi|221066629|ref|ZP_03542734.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
 gi|220711652|gb|EED67020.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
          Length = 708

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/712 (35%), Positives = 382/712 (53%), Gaps = 52/712 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++++L  ++      YY    P + D EYD + ++ +A+  A+P L     P+ P  ++ 
Sbjct: 32  KVAALRAQLWQWAHEYYVLDAPTVPDGEYDRVYQQLEALEGAYPALV---TPDSPTQRVI 88

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDDNS-IFFTLEPKIDG 136
           G +   L  V H++P LS++   + E      F  R+ +        + I +  EPK DG
Sbjct: 89  GAVLDGLTPVRHAVPMLSIQTETDNEATGAMAFDQRVRKELGLDASAAAIEYVAEPKFDG 148

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVYIS 194
             + +RYE G+ V A  RGDG  GEDV+  IR I  IP  L    N+P ++EVRGEV+++
Sbjct: 149 LAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLSLPADRNVPPVVEVRGEVHMA 208

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT-----SE 248
           K D   LN    A G K +ANPRNAA+G +R+L+ +    R L+FF +GLG+        
Sbjct: 209 KADLEKLNARQQAAGAKTFANPRNAAAGSVRQLDSSIAAQRPLSFFAYGLGEITPPEQGG 268

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 Y MLQ +R  GFPV   V  A     +V+++  + + R+ LPY+IDG+VYKV+ 
Sbjct: 269 PDFGTHYAMLQTLRSWGFPVAPQVALARGASELVAFHQRIGAERANLPYEIDGVVYKVNS 328

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG ++R PRW ++HK+  ++  T +  ID+Q+GRTG LTPVARL PV +GG ++
Sbjct: 329 LALQRRLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGKLTPVARLAPVQVGGVVV 388

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATL N   I+            + +RVGD+V+V+RAG+VIP+VV  +  ER      F
Sbjct: 389 TNATLSNLFDIRK-----------KGVRVGDQVIVRRAGDVIPEVVGRVPGERPVYVPNF 437

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CPIC S VVR+         A HRCTGGL C AQ+ E + HF  R A +IEGLG 
Sbjct: 438 RMPRTCPICASAVVREKGE------ANHRCTGGLFCGAQRKEAILHFAHRRAMDIEGLGD 491

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D     +     +R+  D++ L        + +  +    + S  N+  ++ K ++ 
Sbjct: 492 KLVDQLVDGQ----VVRVLPDLYRL------GLSSLAALDRMAEKSAQNVLAALEKSKST 541

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L+RF+F LGIR+VG   AR LAK++                       L++V  VG ++
Sbjct: 542 TLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDA----------SVEELLQVKDVGPVV 591

Query: 609 AQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A +I  F+  P N   VE L    V    G   +     +    +V TGTL  + R  A+
Sbjct: 592 ADSIHTFFAQPHNREVVEQLRACGVHWEEGEPVEKAPQILAGLTVVLTGTLPTLGRDVAK 651

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA VS  +S+KT  ++ G   GSKL KA++LGV +++E   L LL+
Sbjct: 652 DMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLALLR 703


>gi|296046585|gb|ADG86434.1| NAD-dependent DNA ligase [Francisella novicida]
          Length = 670

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/712 (34%), Positives = 386/712 (54%), Gaps = 51/712 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + E+  L   I+ H+  YY    P I D+EYD L +R   +   +P     +  + P  
Sbjct: 4   IQTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELERDYPQF---KSVDSPTQ 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG       ++TH  P LSL+  +   D   F  RI         +S+ +  EPK+DG
Sbjct: 61  RVGGIALQKFAQITHLKPMLSLDNAFEQADFAAFNKRITDK-----VDSVDYVCEPKLDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             ++I Y  G    AA RGDG  GED++A +R I +IP  L     P+++EVRGEV++ K
Sbjct: 116 LAVSITYRFGVLERAATRGDGSVGEDITANVRTIRSIPLKLRGEGFPDLVEVRGEVFMPK 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE---IFA 251
             F ALN   I+ G K + NPRNAA+G LR+L+     +R L F+ + LG          
Sbjct: 176 AAFEALNQRQISKGDKVFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGESQPMQ 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y  L +++  G PV++ V+  +    + +YY ++ + RS L Y+IDG+V KV++ + 
Sbjct: 236 TSHYGQLTQLQQWGIPVSSEVKVTDLLEKVYAYYADIMARRSALEYEIDGVVIKVNDIAK 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  A++PRW I++KF  ++  T L  +D Q+GRTG +TPVARL+P+ +GG  ++NA
Sbjct: 296 QQTLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLKPIFVGGVTVSNA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L            +++GD V+++RAG+VIP++V I+  +R  DAQ   FP
Sbjct: 356 TLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPDDAQDIIFP 404

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+CQS V R          A  RC+GGL C AQ+ E +KHF SR A NI+G+G + +
Sbjct: 405 LHCPVCQSIVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALNIDGMGDKIV 458

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     ++ PAD+F+L     T   ++         S TN+  +I   +  +L 
Sbjct: 459 EQLIDKE----LVKTPADLFSLTASSITMLDRMAM------KSATNIVAAIKHAKATTLA 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++  ++                   L+ V  VGDI+A+ 
Sbjct: 509 RFLYSLGIREVGEATAANLAQHFAEFERIRTA----------SVEQLLEVADVGDIVAKH 558

Query: 612 IVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I +F+  P NI  +E  L   ++  +          ++ +  V TGTL ++ R+ A+  +
Sbjct: 559 IRQFFAQPHNIEVIEQLLEAGITWPVIEQADESQLSLKGQTWVLTGTLTQLNRNDAKAQL 618

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S+ TD ++ G+  GSKL KA++LGVK+++E+  + LL   N
Sbjct: 619 QALGAKVAGSVSKNTDCLVAGEAAGSKLAKAEELGVKVIDEQALMDLLNAAN 670


>gi|184157078|ref|YP_001845417.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
 gi|254778156|sp|B2HUJ5|DNLJ_ACIBC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183208672|gb|ACC56070.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
          Length = 673

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/712 (35%), Positives = 377/712 (52%), Gaps = 47/712 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   + P  K+
Sbjct: 3   EQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA---DSPTTKV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E K+DG  
Sbjct: 60  GGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP---NQKVQYEVELKLDGLA 116

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISK 195
           I++ YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVRGEV + K
Sbjct: 117 ISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPK 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKG 253
           + F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +         
Sbjct: 177 SGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTT 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KVD+   Q+
Sbjct: 237 MHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQ 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG  ++N TL
Sbjct: 297 QLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+    P  
Sbjct: 357 HNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPES 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++ 
Sbjct: 406 CPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVES 459

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + +     ++  ADI+ L   ++T       I   G+ SV NL D+I   +  +L RF
Sbjct: 460 LLRLD----LLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASKKTTLARF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGIR VG   AR LA  + + +         +             P VGDI A+ I 
Sbjct: 512 IYALGIRGVGETTARMLANTFQTLEALKAANVEALKKT----------PDVGDITAEWIA 561

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +F+  P NI  ++ L                  +  +  V TGTL+++ R +A + +  L
Sbjct: 562 DFFLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQAL 620

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 621 GARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTL 672


>gi|163736311|ref|ZP_02143730.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis BS107]
 gi|161390181|gb|EDQ14531.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis BS107]
          Length = 752

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/763 (39%), Positives = 444/763 (58%), Gaps = 57/763 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +     +++L+ ++AR     L+ E+   D  Y+Q   P I D++YDA KR   A+A 
Sbjct: 1   MTQSGNNNLKSLTSDEARARFLLLQDELRAADLAYHQADDPEISDADYDAKKREYRALAE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP+LA        L  +G  +     K+TH+   +SL   ++ ED+R F   + ++   
Sbjct: 61  HFPELADGATA---LETVGAPVASGFGKITHAQRMMSLGNAFDDEDVRDFDKGLRKYLGL 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
              + + +T EPKIDG  +++RYE GK ++AA RGDG  GE+V+   R I  IP+ ++  
Sbjct: 118 GASDPLAYTAEPKIDGLSLSLRYENGKLIHAATRGDGAVGENVTENARTIADIPQEIA-A 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFF 239
            P ++EVRGEVY+S  DF ALND   A G K +ANPRNAA+G LR+LN     +R L FF
Sbjct: 177 APAVLEVRGEVYMSHEDFAALNDRHAAQGGKTFANPRNAAAGSLRQLNAEITRSRPLRFF 236

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ SE  A+ Q+E L ++R +GF  N   +  +T   +++ Y  +++ R+TL YDI
Sbjct: 237 AYSWGELSEPLAETQFEALTRLREMGFQTNPLTKYCSTTDALIAQYRLIEAQRATLGYDI 296

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD  +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+
Sbjct: 297 DGVVYKVDALALQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQ 356

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ + 
Sbjct: 357 PVTVGGVVVSNATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLP 416

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA PF+FP+ CP C S  VR+      +  A  RCTGGL C AQ +E+LKHFVSR 
Sbjct: 417 KRPEDAVPFAFPAACPECGSDAVRE------EGDAVRRCTGGLICPAQAVEKLKHFVSRK 470

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG +Q++ F+   D   +I+ PADIFTLQ R   +  K++N  G+G+ S  NL+
Sbjct: 471 AFDIDGLGAKQIEAFY--GDAVLTIKTPADIFTLQARDAKTLAKLKNRDGWGETSAANLF 528

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN-------------- 585
            +I ++R I L R IF LGIRHVG   AR LA +Y  +   A  ++              
Sbjct: 529 AAIEEKRRIELARLIFGLGIRHVGEVGARDLALHYADWDAMAAAVDTARPAALAQRAADE 588

Query: 586 -----------------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
                                        N+ +     W  L  +  +G  +  ++ + +
Sbjct: 589 AEDRERVAAAQENRRARIKEARDRAVATLNVPSEARAAWDDLTGIDGIGATLGVSLSDAF 648

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            N     A +AL   +   I        S +    +VFTGTL+K+ R +A+     LGA 
Sbjct: 649 ANTEERAAFDALRGHLDI-IPPEAPQNDSPVTGLTVVFTGTLEKMTRAEAKARAEGLGAK 707

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KTDI++ G   GSK +KA+ LGV+I++E+ +L L+ 
Sbjct: 708 VAGSVSKKTDILVAGPGAGSKEQKARDLGVRILDEDGWLELIA 750


>gi|108759370|ref|YP_633776.1| NAD-dependent DNA ligase [Myxococcus xanthus DK 1622]
 gi|123074067|sp|Q1D0P7|DNLJ_MYXXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|108463250|gb|ABF88435.1| DNA ligase, NAD-dependent [Myxococcus xanthus DK 1622]
          Length = 672

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/711 (35%), Positives = 396/711 (55%), Gaps = 52/711 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++A      L +E+++H+  YY    P + D++YD L R    +    P L   + P+ P
Sbjct: 5   QKAAARARELHRELAHHNYRYYVLDSPEVSDAQYDKLMRELQDLEAKHPSL---QTPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG       +V H  P +SL  I+  + L +F  RI +         I +  EPK+
Sbjct: 62  TQRVGGAAAEEFGEVVHRAPMISLANIFEDQGLTEFDERIRKLVGLPG---IAYVCEPKL 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGE 190
           DG  I +RYEKG FV  A RGDG +GEDV++ +R I ++P  L     + +P+++EVRGE
Sbjct: 119 DGLAIALRYEKGAFVQGATRGDGTTGEDVTSNLRTIRSLPMSLFPQDDVKVPDVLEVRGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V+I K DF  LN++    G   +ANPRNAA+G LR+L+P     R L+ F++       +
Sbjct: 179 VFIRKKDFQKLNEKREEEGEPLFANPRNAAAGSLRQLDPRMTAARPLSVFLYECVPGEGV 238

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   E L+ ++ LG P+N   R+A    G+   Y+     R  LP+++DG+V KVD+
Sbjct: 239 PVFKTHIEKLEYLKTLGLPINQ-YRRAEGLEGVRQAYDASLKGRHELPFEVDGMVVKVDD 297

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +K+LG+ ++SPRW +++KF  ++ ST ++DI IQ+GRTG LTPVA L+PV +GG  +
Sbjct: 298 EDQRKRLGQVSKSPRWAVAYKFPPEEESTEVMDIGIQVGRTGALTPVAHLKPVKVGGVTV 357

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHNED ++            +D+R GD V V+RAG+VIP++V +++++R  D+ PF
Sbjct: 358 ARATLHNEDELRR-----------KDVRKGDTVFVRRAGDVIPEIVSVVLSKRPADSAPF 406

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+C +   +D +       A  RCTG  +C AQ +E+++HF SR A +IEGLG 
Sbjct: 407 EFPKHCPVCDAVATKDED------GAIIRCTGA-SCPAQLVEKIRHFASRLAMDIEGLGD 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +       +      ++  AD++ L +    +  ++      GD S  NL  S+ + +  
Sbjct: 460 KLAAQLVSTGR----VKAFADLYALTKEDLLTLERM------GDKSADNLIASLERSKQT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF++SLGIRHVG   A++LA+ +   +   +               + RV  VG I+
Sbjct: 510 TQRRFLYSLGIRHVGDATAKALAEAFPRSEMLFEA----------SLEDISRVKDVGPIM 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           AQ I  F+Q P+N  A+ AL           +         K +V TG +  + R +A+E
Sbjct: 560 AQVIHTFFQEPQNQEAIRAL-LAAGVQPAAPQVATGGPFVGKSVVLTGAMTGMTREQAKE 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V + G  V+  +SRKTD ++ G++ GSKL+KAQ+LGV+I++E+ FL +LQ
Sbjct: 619 EVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELGVRILDEQAFLQMLQ 669


>gi|152997408|ref|YP_001342243.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1]
 gi|190359264|sp|A6W0S9|DNLJ_MARMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150838332|gb|ABR72308.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1]
          Length = 672

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 382/709 (53%), Gaps = 45/709 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L Q+++ +   Y+   +PI+ D+ YD   R+  +I    P+  ++   + P  ++
Sbjct: 4   QQMLDLIQQLNDYSYAYHVKDEPIVPDAVYDRDYRQLQSIEAEHPEWIQA---DSPTQRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G + +     V H++P LSL+  ++ E L  F  RI +         + +  EPK+DG  
Sbjct: 61  GEKPDSGFTNVAHTVPMLSLDNAFDNESLADFDQRIRKLLNA---EQVTYCCEPKLDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++RYE+G+ V    RGDG SGED+++ I+ I ++P  L     P ++EVRGE+Y+ K  
Sbjct: 118 ISLRYEEGRLVRGVTRGDGLSGEDITSNIKTIYSVPLKLRTKTPPAVLEVRGEIYMPKEG 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQY 255
           F  LN   +  G K + NPRNAA+G LR+L+P     R L    + +G        +  Y
Sbjct: 178 FEKLNALAVEQGEKTFVNPRNAAAGSLRQLDPKVTAKRPLVMCAYSIGYVEGWEQPESHY 237

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L ++   GF  N+ +  A    G + YY ++   R++L YDIDG+VYKVD+ +LQ QL
Sbjct: 238 AGLLQLSEWGFRTNDLMITAEGAQGCIDYYEKLNEKRASLSYDIDGIVYKVDQIALQNQL 297

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW I+ KF  ++  TR+L +D Q+GRTG +TPVARLEPV +GG  ++NATLHN
Sbjct: 298 GFIARAPRWAIARKFPAQEEMTRILGVDFQVGRTGAITPVARLEPVFVGGVTVSNATLHN 357

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           +D I  L            ++V D V+V RAG+VIPKVV +++++R  +A    FP  CP
Sbjct: 358 KDEIARL-----------GVKVNDFVIVHRAGDVIPKVVQVVIDKRPENATEVVFPEACP 406

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S + +          A  RCTGGL C AQ  E LKHFVSR A +I+GLG + ++   
Sbjct: 407 VCGSDLEQVEGE------AVIRCTGGLVCGAQLKESLKHFVSRKAMDIDGLGDKLIEQLV 460

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             +     ++ P DIFTL  ++ T      ++   G  SV  L  SI   ++    RFI+
Sbjct: 461 DQQ----LVKTPVDIFTLSEKKDTLL----SMERMGQKSVEKLLASIEIAKSTQFNRFIY 512

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGIR VG   AR+L  Y+    +              D  +L+ V  VG I+AQ +  F
Sbjct: 513 SLGIREVGEATARALTSYFTELDDLMAA----------DQETLVEVEDVGPIVAQHVRLF 562

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +    N   ++ LL        + + +     +  K  V TG+L +  R + ++ +  LG
Sbjct: 563 FDQELNRDTIKGLLAAGVVWEKKQQVSADELPLSGKTYVVTGSLSQFSRDQVKDKLQALG 622

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           A VS  +S KTD ++ G+  GSKL KAQ L V I++E   + LL ++  
Sbjct: 623 AKVSGSVSAKTDCLVAGEKAGSKLTKAQSLNVPIIDEAGVIALLTEHGA 671


>gi|315303635|ref|ZP_07874170.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596]
 gi|313627998|gb|EFR96596.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596]
          Length = 678

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 369/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P N+
Sbjct: 11  KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWV---TPESPSNR 67

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N +DL  F  RI           + +  E KIDG 
Sbjct: 68  VGGEVLEGFQKVAHDTPMLSLANAFNKDDLADFDRRIRDKVG----EDVAYMCELKIDGL 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG +GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 124 AVSLQYENGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKSY--SIEVRGEAFMPKRS 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+       
Sbjct: 182 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSA 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  +T   + +Y +E    R+ L YDIDG+V K+++   Q+Q+G
Sbjct: 242 GLAMLETLGLKVNKERRLCSTLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  +  A+LHNE
Sbjct: 302 TTAKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVVTPTAVLEPVRVAGTTVGRASLHNE 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER  D +PF  P+ CP 
Sbjct: 362 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSIAEERTGDEEPFHMPANCPT 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 411 CGSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 463

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L + +     ++      G+ SVTNL  SI + +  SLE+ +F 
Sbjct: 464 HH----LIKDVADLFFLSKEKLLELERM------GEKSVTNLLASIEQSKQNSLEKLLFG 513

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA Y+ +                 D  +L R+  +G+ +A +IV ++
Sbjct: 514 LGIRHVGAKAAKSLAIYFETMDKLKLA----------DKETLTRINDIGEKMADSIVTYF 563

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      ++ L +          K             K +V TG L+++ R+ A+  + 
Sbjct: 564 ANEEVHNLLDELKRAGVNMTYTGPKLDDMSEEELVFAGKTVVLTGKLEQLTRNDAKALIE 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +E   +  L    
Sbjct: 624 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYLPDEG 674


>gi|284047985|ref|YP_003398324.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731]
 gi|283952206|gb|ADB47009.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731]
          Length = 675

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/717 (34%), Positives = 378/717 (52%), Gaps = 51/717 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++ E A   +  L   +  +   YY    P+I D+EYDA+ R   A+   +P+L   
Sbjct: 1   MSEMTKEAAAARIDQLRAVMKKNSYLYYVQDNPLITDAEYDAMMRELKALEAEYPELV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P   +GG       +V H  P LSL   ++ E++ +F  R++    +  D  + +
Sbjct: 59  -TPDSPSQHVGGYAKPGFTEVRHMTPLLSLANAFSPEEMEEFDRRVHEGLPQ--DVKVQY 115

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEI 184
            +EPKIDG   +I YE G+FV AA RGDG  GE+V+  +R I  IP+VL     + IPE+
Sbjct: 116 VVEPKIDGLACSIIYENGRFVRAATRGDGVVGENVTENVRTIANIPKVLKPIPGIEIPEL 175

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL 243
           ++VRGEVY+ +  F+ LN+E    G + +AN RNAA+G LR+L+P    R  L FF +G+
Sbjct: 176 LDVRGEVYMPRQAFVKLNEERQEAGEQEFANCRNAAAGSLRQLDPRVTARRSLAFFAYGV 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G  +          +  ++  GF    G    +T         +    R+ L YD DG+V
Sbjct: 236 GVGAGNLP-THNASMDMLQQYGFTTTEGRTLVDTIQEANELIKKHGERRAVLGYDTDGVV 294

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++   Q  LG   + PRW +++KF  +QA T L DI IQ+GRTG+LTP A L PV +
Sbjct: 295 VKVNDVWQQNILGATGKDPRWAMAYKFPPEQAETLLEDIVIQVGRTGVLTPTAVLRPVRL 354

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ I+ ATLHNED+I+            RDIR+GD V++ +A E+IP+V+ ++  +R  
Sbjct: 355 SGSTISRATLHNEDFIR-----------ERDIRIGDHVIINKAAEIIPEVLRVVPEKRTG 403

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           + + F  P  CP C  +V R          AA RCT    C A   E L HF SRDA NI
Sbjct: 404 EEKEFHMPETCPECGWKVERKAGE------AAWRCTNP-HCPALGREGLIHFTSRDAMNI 456

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G G   L         A  ++ P D++ L R       ++E +   G  S  NL  +I 
Sbjct: 457 DGCGPSVLAQL----TAAGLVKDPGDLYLLTR------EQVETLDRMGPKSADNLVSAIA 506

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +N SL++ +F+LGIRHVGA++A +LA+ Y +                 D   L + P 
Sbjct: 507 ASKNQSLDKLLFALGIRHVGAKVAHTLARKYGTMDKLMAA----------DQEDLAQTPD 556

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           +G +IA+++V ++ +P N   VE L +            ++ +     K LVFTGTL  +
Sbjct: 557 IGPVIAESVVTWFADPMNQAYVERLKELGLNMEMTSGPAQDENHPFYGKTLVFTGTLPTL 616

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R  A+    ++GA V+  +S+KTD ++ G +PGSK  KAQ LGV I++E +FL ++
Sbjct: 617 DRATAKTMAQEVGAKVTGSVSKKTDYVVAGADPGSKYTKAQSLGVTILDEAEFLRMM 673


>gi|257865964|ref|ZP_05645617.1| DNA ligase [Enterococcus casseliflavus EC30]
 gi|257872297|ref|ZP_05651950.1| DNA ligase [Enterococcus casseliflavus EC10]
 gi|257799898|gb|EEV28950.1| DNA ligase [Enterococcus casseliflavus EC30]
 gi|257806461|gb|EEV35283.1| DNA ligase [Enterococcus casseliflavus EC10]
          Length = 676

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/716 (32%), Positives = 376/716 (52%), Gaps = 53/716 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++ +     L  +++ +   YY   +P + D  YD L      I   +P L      + P
Sbjct: 6   KEIQSRAEELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIETNYPQLVTE---DSP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +     KVTH IP  SL  +++ E +  F  R+ +   K    ++ +  E KI
Sbjct: 63  TQRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARVQKALGK----AVDYVCELKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I+++YE+G+FV  A RGDG  GE+++  ++ + +IP  L L  P  +EVRGE Y+ 
Sbjct: 119 DGLSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIP--LKLKEPISLEVRGECYMP 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           K  FL LN +    G + +ANPRNAA+G LR+L+      R L+ F++ L     I A  
Sbjct: 177 KASFLKLNQQREEEGAEVFANPRNAAAGSLRQLDTRIAAQRNLSTFLYTLADFGPIEAND 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+  L ++  LGF  N+  R  +T   + +Y  E    RS LPY+IDG+V KV+ F  Q 
Sbjct: 237 QFSALNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPYEIDGVVIKVNNFKDQD 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   ++PRW  ++KF  ++A T +  I+  +GRTG++TP A + PV + G  ++ A+L
Sbjct: 297 ALGFTVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D+IK            +DIR+GD V++ +AG++IP+V  ++  +R   +Q F  P+ 
Sbjct: 357 HNVDFIKM-----------KDIRIGDSVIIYKAGDIIPEVAKVLEEKRTEASQSFESPTH 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S ++            A RC     C AQ  E L HFVSR+A NI+GLG + L+ 
Sbjct: 406 CPECGSELIHLDEE------VALRCINP-KCPAQIKEGLSHFVSRNAMNIDGLGPRVLEQ 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F        ++  AD++ L   Q  +  KI+      + S  NL  +I++ +  S+ER 
Sbjct: 459 MFDKS----LVKDVADLYFLTEEQLLTLDKIK------EKSANNLLRAIHQSKGNSVERL 508

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF LGIRHVGA+ AR LA+++           ++ A +      +I +  +G  IA+++V
Sbjct: 509 IFGLGIRHVGAKAARILAEHFG----------DLRALSKAKEEEIISLEAIGATIAESVV 558

Query: 614 EFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ N      ++ L +               ++V S  + K +V TG L    R +A+E
Sbjct: 559 TYFDNQEVHDLLDELERAGVNFAYLGLRNEQLEDVESPFKEKTVVLTGKLSHFTREEAKE 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            +  LG  V+  +S+KTDI++ G+  GSKL KAQ LGV + +E Q +  ++  ++ 
Sbjct: 619 RIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTVWDEAQMVAAIEGSHSA 674


>gi|325121133|gb|ADY80656.1| DNA ligase [Acinetobacter calcoaceticus PHEA-2]
          Length = 679

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/719 (36%), Positives = 383/719 (53%), Gaps = 47/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +PDL +S   
Sbjct: 1   MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 58  DSPTTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLP---NQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL  +   IP ++EVR
Sbjct: 115 LKLDGLAISLWYENGLLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPHLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN E  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  RS L  +IDG+V KV
Sbjct: 235 PNHGLTTMHDSLQWLTKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 IVHLPENCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           ++  ADI+ L   ++T       I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLL----HLDLLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +          A    D  +L + P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLE----------ALKAADVEALKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L                  +  +  V TGTL+++ R +A
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQTL 677


>gi|148982028|ref|ZP_01816589.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
 gi|145960667|gb|EDK26012.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
          Length = 670

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/709 (35%), Positives = 384/709 (54%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  +  L  L + + YH   YY    P I D EYD L ++   I    P+L      + P
Sbjct: 3   ESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTV---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+      +VTH IP LSL+  ++ EDL  F  R+       +     F  EPK+
Sbjct: 60  SQRVGGQPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSDRAPTANLK--TFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ Y  G  V AA RGDG +GE+++  +R I +IP  L     PE IEVRGEV++
Sbjct: 118 DGLAVSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
            K  F  LN+  +  G K + NPRNAA+G LR+L+      R L F+ + +G       +
Sbjct: 178 PKAGFDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVEGAELS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y+   +++  G P+    +Q ++   + +YY ++ + R  L Y+IDG+V KVD+ + 
Sbjct: 238 TSHYQRFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDALAYEIDGVVIKVDDIAA 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  ++NA
Sbjct: 298 QEVLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L            ++VGD V+++RAG+VIP++V ++ + R   A+   FP
Sbjct: 358 TLHNADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 DACPVCNSSVERVEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S  N+  ++NK ++ +L 
Sbjct: 461 EQLVDREM----VETPADLFKLSAGVITVLDRM------GPKSAQNVVSALNKAKDTTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ + +      +            L+ V  +GDI+A  
Sbjct: 511 RFLYSLGIREVGEATAMNLAQHFKTLELVQAATHE----------QLVEVSDIGDIVASH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+   +N   VE L++     P I     +    +E K +V TG+L ++ R +A+  
Sbjct: 561 ITAFFSQEKNRAVVEQLIELGVNWPVIEDVPDDQELPLEGKVVVLTGSLSQLGRSEAKAA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA V+  +S+KTDI+  G+  GSKL KAQ LG++I  EE  + LL
Sbjct: 621 LQALGAKVTGSVSKKTDILFAGEAAGSKLIKAQDLGIEIRTEEDLIALL 669


>gi|223936891|ref|ZP_03628800.1| DNA ligase, NAD-dependent [bacterium Ellin514]
 gi|223894460|gb|EEF60912.1| DNA ligase, NAD-dependent [bacterium Ellin514]
          Length = 680

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/713 (33%), Positives = 383/713 (53%), Gaps = 45/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +A+   + L +EI  HD+ YY  +KP I D  YD L      +   FPDL  S   
Sbjct: 1   MTHNEAKTRHTQLVEEIRGHDNAYYVEAKPTISDQAYDRLYHELLDLEKKFPDLITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ GE       V H  P +SL+  ++ +D+R F+ R+ R      + ++ + LE
Sbjct: 58  DSPSQRVSGEPLKEFKPVHHLSPMMSLDNTYSQQDVRDFVGRVQRLLP---NETLEWILE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188
           PK+DG  I ++YEKG FV  A RGDG +G+DV++ ++ I +I   L      +P+++E+R
Sbjct: 115 PKVDGVAINLKYEKGVFVCGATRGDGTTGDDVTSNLKTIRSIAGKLKASGRKLPDVVEIR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEVY+ K  F  +N E +A G +P+ANPRN+A+G L++L+P  +  R L+  V+GLG   
Sbjct: 175 GEVYLPKAAFTKINAERVAAGEEPFANPRNSAAGSLKQLDPRIVAKRPLDVIVYGLGVFE 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   E+L  ++  G        +  +   ++   NE+  +R    Y+ DG V K+
Sbjct: 235 GAERPKEHDEVLAWLKSAGCKTPEKTWKCCSADELIDAINELDQLRRKFTYETDGAVIKL 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           + F+L++++G  +++PRW I++K+A +QA T+L  I IQ+GRTG LTPVA LEPV + G+
Sbjct: 295 NSFALRERIGFTSKAPRWAIAYKYAAEQAETKLKAITIQVGRTGALTPVAELEPVFLAGS 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+ ATLHNED ++            +DIRVGD V +++AGEVIP VV +++ +R     
Sbjct: 355 TISRATLHNEDELRR-----------KDIRVGDTVTIEKAGEVIPAVVGVVLTKRTGKEV 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F FP+ CP C S+V R    + G      RC    AC AQ   R++H+ +R A +IEG 
Sbjct: 404 QFQFPTHCPECGSKVARTEGTENGAAGVVWRCLNA-ACPAQIRGRIEHWCARGAMDIEGG 462

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+  +            +R  +D+++L         ++  +   G+ S  N  D +   +
Sbjct: 463 GEALVSQLVTK----GLVREVSDLYSLT------LDQVAGLERMGEKSAQNFLDGVQASK 512

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              + R +F LGI HVGA +A+ L + + +  +                  L  V  +G+
Sbjct: 513 TRDMWRLLFGLGILHVGAGVAKRLGRRFTTLDDIFAA----------SQEQLTEVEDIGE 562

Query: 607 IIAQAIVEFYQNPRNICAVE--ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +IA +IV+++Q P+N   +E          S              K  V TGTL  ++R 
Sbjct: 563 VIAHSIVQWHQEPKNRELIELLRKAGLNFNSELYKPAAALGHFAGKTFVLTGTLPTLKRE 622

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +A   +  LG  VS  +S+KTD I+ G++ GSKLEKAQ+LGVKI++E  FL L
Sbjct: 623 EAAAKIEALGGKVSGSVSKKTDYIVAGEDAGSKLEKAQKLGVKIIDEAAFLKL 675


>gi|257875591|ref|ZP_05655244.1| DNA ligase [Enterococcus casseliflavus EC20]
 gi|257809757|gb|EEV38577.1| DNA ligase [Enterococcus casseliflavus EC20]
          Length = 676

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/716 (32%), Positives = 377/716 (52%), Gaps = 53/716 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++ +     L  +++ +   YY   +P + D  YD L      I   +P L      + P
Sbjct: 6   KEIQSRAEELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIETNYPQLVTE---DSP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +     KVTH IP  SL  +++ E +  F  R+ +   K    ++ +  E KI
Sbjct: 63  TQRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARVQKALGK----AVDYVCELKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I+++YE+G+FV  A RGDG  GE+++  ++ + +IP  L L  P  +EVRGE Y+ 
Sbjct: 119 DGLSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIP--LKLKEPISLEVRGECYMP 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           K+ FL LN +    G + +ANPRNAA+G LR+L+      R L+ F++ L     I A  
Sbjct: 177 KSSFLKLNQQREEEGAEVFANPRNAAAGSLRQLDTRIAAQRNLSTFLYTLADFGPIEAND 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+  L ++  LGF  N+  R  +T   + +Y  E    RS LPY+IDG+V KV+ F  Q 
Sbjct: 237 QFSALNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPYEIDGVVIKVNNFKDQD 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   ++PRW  ++KF  ++A T +  I+  +GRTG++TP A + PV + G  ++ A+L
Sbjct: 297 ALGFTVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D+IK            +DIR+GD V++ +AG++IP+V  ++  +R   +QPF  P+ 
Sbjct: 357 HNVDFIKM-----------KDIRIGDSVIIYKAGDIIPEVAKVLEEKRTEASQPFESPTH 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S ++            A RC     C AQ  E L HFVSR+A NI+ LG + L+ 
Sbjct: 406 CPECGSELIHLDEE------VALRCINP-KCPAQIKEGLSHFVSRNAMNIDSLGPRVLEQ 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F        ++  AD++ L   Q  +  KI+      + S  NL  +I++ +  S+ER 
Sbjct: 459 MFDKS----LVKDVADLYFLTEEQLLTLDKIK------EKSANNLLRAIHQSKGNSVERL 508

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF LGIRHVGA+ AR LA+++           ++ A +      +I +  +G  IA+++V
Sbjct: 509 IFGLGIRHVGAKAARILAEHFG----------DLRALSKAKEEEIISLEAIGATIAESVV 558

Query: 614 EFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ N      ++ L +               ++V S  + K +V TG L    R +A+E
Sbjct: 559 TYFDNQEVHDLLDELERAGVNFAYLGLRNEQLEDVESPFKEKTVVLTGKLSHFTREEAKE 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            +  LG  V+  +S+KTDI++ G+  GSKL KAQ LGV + +E Q +  ++  ++ 
Sbjct: 619 RIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTVWDEAQMVAAIEGSHSA 674


>gi|228472685|ref|ZP_04057445.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624]
 gi|228276098|gb|EEK14854.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624]
          Length = 666

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/710 (31%), Positives = 376/710 (52%), Gaps = 48/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++ +L +E++ H+  YY    P I D E+D   +    +   +P     +DPN 
Sbjct: 1   MDSILQQIEALRKELNEHNYNYYVLDTPSISDYEFDQKLKALQDLEAQYPQY---KDPNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE+  +   VTH     SL+  ++ E++ ++  R+ +       + + F  E K
Sbjct: 58  PTVRVGGEITKNFPTVTHEFRMYSLDNSYSKEEVEEWEKRVLKGLGT---DKVSFVCELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + Y+ G+ V A  RGDG  G++++A +R I ++P  L  + P+   +RGE+ I
Sbjct: 115 YDGASIDLTYDHGQLVQATTRGDGVQGDEITANVRTIRSVPLTLKGDYPDHFHIRGEIII 174

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F  +N++ IA G  PY NPRN ASG L+  +  ++  R L+  ++ +     +   
Sbjct: 175 LKEGFKKMNEQRIAEGEDPYMNPRNTASGSLKLQDTAEVAKRPLDCLLYYVV-GDNLPVD 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q++ LQK R  GF V +  +  ++   ++ + N   + R  LPY+ DG+V KV+++  Q
Sbjct: 234 NQFDSLQKARDWGFKVPSQSKLCHSTDEVMEFINYWDTRRHDLPYETDGVVIKVNDYQAQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  ++SPRW I++KF  ++ +T L  I  Q+GRTG +TPVA L PV + G ++  A+
Sbjct: 294 QELGYTSKSPRWAIAYKFKAEEVTTSLESISYQVGRTGAITPVANLSPVLLAGTIVKRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I  L            + +GD+V V++ GE+IPK+  + +  RH  A P +F +
Sbjct: 354 LHNADQIAKL-----------GLHIGDQVFVEKGGEIIPKITGVRLEARHEQATPVTFIT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +VR+         A H C     C  Q   R++HF+SR A NIEGLG + ++
Sbjct: 403 HCPECGSELVRNEGE------AQHYCPNAYGCPPQITGRIQHFISRKAMNIEGLGSETVE 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F+    A  I   AD++ L+        +I+N+   G  S  N+   I K + +  ER
Sbjct: 457 LMFR----AGLIHNYADLYELKA------EQIQNLERMGTRSAQNIITGIEKSKEVPFER 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGIR VG  +A+  A+ Y +   F              +  LI+V  +GD IAQ++
Sbjct: 507 VLFALGIRMVGESVAKKFARIYKTLDAFRTA----------PYEQLIQVDEIGDRIAQSV 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +EF+ + RN   +E L             + ++S  ++ K LV +G   +  R + +  +
Sbjct: 557 IEFFADDRNKEILERLQGYGLQFALKETAQTSLSEALKGKTLVVSGVFARHSRDEIKALI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  V + +S KT+ ++ G+N G SKLEKA QLG+ I++EE+F  ++Q
Sbjct: 617 ESHGGKVGSSISSKTNYVVAGENMGPSKLEKATQLGIPILSEEEFEKMIQ 666


>gi|163741160|ref|ZP_02148552.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis 2.10]
 gi|161385513|gb|EDQ09890.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis 2.10]
          Length = 741

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/752 (39%), Positives = 440/752 (58%), Gaps = 57/752 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++AR     L+ E+   D  Y+Q   P I D++YDA KR   A+A  FP+LA     
Sbjct: 1   MTSDEARARFLLLQDELRVADLAYHQADDPEISDADYDAKKREYRALAEHFPELADGATA 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
              L  +G  +     K+TH+   +SL   ++ ED+R F   + ++      + + +T E
Sbjct: 61  ---LETVGAPVASGFGKITHAQRMMSLGNAFDDEDVRDFDKGLRKYLGLGASDPLAYTAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYE GK ++AA RGDG  GE+V+   R I  IP+ ++   P ++EVRGEV
Sbjct: 118 PKIDGLSLSLRYENGKLIHAATRGDGAVGENVTENARTIADIPQEIA-AAPAVLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+S  DF ALND   A G K +ANPRNAA+G LR+LN     +R L FF +  G+ SE  
Sbjct: 177 YMSHEDFAALNDRHAAQGGKTFANPRNAAAGSLRQLNAEITRSRPLRFFAYSWGELSEPL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+ Q+E L ++R +GF  N   +  +T   +++ Y  +++ R+TL YDIDG+VYKVD  +
Sbjct: 237 AETQFEALARLREMGFQTNPLTKHCSTTDALIAQYRLIEAQRATLGYDIDGVVYKVDALA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+PV +GG +++N
Sbjct: 297 LQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQPVTVGGVVVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ +++R  DA PF+F
Sbjct: 357 ATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLSKRPEDAVPFAF 416

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S  VR+      +  A  RCTGGL C AQ +E+LKHFVSR AF+I+GLG +Q
Sbjct: 417 PAACPECGSDAVRE------EGDAVRRCTGGLICPAQAVEKLKHFVSRKAFDIDGLGAKQ 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F+   D   +I+ PADIFTLQ R   +  K++N  G+G+ S  NL+ +I ++R I L
Sbjct: 471 IEAFY--GDAVLAIKTPADIFTLQARDAKTLAKLKNRDGWGETSAANLFAAIEEKRRIEL 528

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------------- 585
            R IF LGIRHVG   AR LA +Y  +   A  ++                         
Sbjct: 529 ARLIFGLGIRHVGEVGARDLALHYADWDAMAAAVDTARPAALAQRAADEAEDRERVAAAQ 588

Query: 586 ------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
                             N+ +     W  L  +  +G  +  ++ + + N     A +A
Sbjct: 589 ENRRARIKEARDRAVATLNVPSEARAAWDDLTGIDGIGATLGVSLSDAFANTEERAAFDA 648

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L   +   I        S +    +VFTGTL+K+ R +A+     LGA V+  +S+KTDI
Sbjct: 649 LRGHLDI-IPPEAPQNDSPVTGLTVVFTGTLEKMTRAEAKARAEGLGAKVAGSVSKKTDI 707

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ G   GSK +KA+ LGV+I++E+ +L L+ 
Sbjct: 708 LVAGPGAGSKEQKARDLGVRILDEDGWLELIA 739


>gi|293609092|ref|ZP_06691395.1| DNA ligase [Acinetobacter sp. SH024]
 gi|292829665|gb|EFF88027.1| DNA ligase [Acinetobacter sp. SH024]
          Length = 679

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/719 (36%), Positives = 383/719 (53%), Gaps = 47/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +PDL +S   
Sbjct: 1   MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  I + +E
Sbjct: 58  DSPTTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLP---NQKIQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVR 188
            K+DG  I++ YE G  +    RGDG +GED++  I+ I  +P+VL  +   IP ++EVR
Sbjct: 115 LKLDGLAISLWYENGVLIRGVTRGDGETGEDITQNIKTIRNLPKVLHSDHFEIPRLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K+ F  LN E  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  RS L  +IDG+V KV
Sbjct: 235 PNHGLTTMHDSLQWLIKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 VVHLPENCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           ++  ADI+ L   ++T       I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLL----HLDLLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +          A    D  +L + P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLE----------ALKAADVEALKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L                  +  +  V TGTL+++ R +A
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQTL 677


>gi|332306125|ref|YP_004433976.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173454|gb|AEE22708.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 677

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/718 (36%), Positives = 403/718 (56%), Gaps = 51/718 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ALS  Q    L+ L   I+ ++  YY    P + D+EYD L R    I  A PDL     
Sbjct: 4   ALSPAQ---RLTQLINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIEKAHPDL---RS 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  K+GG    +  +V H +P LSL+  ++ +D+  F  RI    +    + I F+ 
Sbjct: 58  PDSPSQKVGGAALSAFEQVEHEVPMLSLDNAFDEDDMFAFEKRIKDRLKIT--SEISFSC 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRG 189
           EPK+DG  ++I YE GK V AA RGDG  GE+++  +R I  +P  L   + P+ +EVRG
Sbjct: 116 EPKLDGLAVSILYEDGKLVRAATRGDGRVGENITTNVRTIANVPLSLRGEDFPQRLEVRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS- 247
           EV +++  F  LN+  I  G+KP+ NPRNAA+G LR+L+P     R L F+ + LG    
Sbjct: 176 EVIMTRAGFDILNEAQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVEN 235

Query: 248 --EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             +         L+++   G P++  +  A      ++Y++++  +RS L YDIDG+V+K
Sbjct: 236 EQQPLGTTHSARLKQLSDWGLPLSKELEVAQGAKECLTYFHKIGELRSQLSYDIDGVVFK 295

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ ++Q+ LG  AR+PRW I+HKFA ++  + LLD++ Q+GRTG +TPVARL P  +GG
Sbjct: 296 VDDIAMQQTLGFVARAPRWAIAHKFAAQEEMSTLLDVEFQVGRTGAITPVARLAPTFVGG 355

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHN+D I  L            I++GD V+++RAG+VIP++V I+ ++R  DA
Sbjct: 356 VTVSNATLHNQDEINRL-----------GIKIGDSVIIRRAGDVIPQIVAIVADKRPDDA 404

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +   FP  CP+C S V +          A  RCTGGL C AQ+ E +KHF SR A +I+G
Sbjct: 405 KDILFPESCPVCSSAVEKLEGE------AVARCTGGLYCKAQRKEAMKHFASRKALDIDG 458

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++    ++     ++ PAD F L     +S  ++      G+ S  NL +S+ K 
Sbjct: 459 LGDKLIEQLVDADM----VKSPADFFALDIAPLSSMERM------GEKSAVNLVNSLGKS 508

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +L +F++SLGIR VG   A++LA ++L+     Q           D  +L  V  VG
Sbjct: 509 KKTTLAKFLYSLGIREVGEATAQNLALHFLTLDAIEQA----------DLDALQAVSDVG 558

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
            I+AQ +V F++   N+  + AL +         +  V    +  +  V TGTL  + R+
Sbjct: 559 IIVAQHVVNFFKEEHNLEVISALQEAGVHWPKIEKIAVDELPLAGQVYVLTGTLNVMDRN 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +A+  +  LGA VS  +S KTD ++ G+  GSKL KAQ LGVK+MNE++ L +  + +
Sbjct: 619 QAKAKLQSLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDEMLAMFAELD 676


>gi|319941620|ref|ZP_08015944.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
 gi|319804850|gb|EFW01704.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
          Length = 745

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/721 (36%), Positives = 395/721 (54%), Gaps = 47/721 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
            ALS +QA   +  LE E+   +  YY   +P + D+EYD       A+   FP+L    
Sbjct: 50  AALSPDQAPARMHQLETELERWNYEYYVLDEPSVPDAEYDRAFNELKALEARFPELKSR- 108

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQK-KDDNSI 126
               P  ++GG +     KV H +P LS+  E  ++      F  R+        +D  +
Sbjct: 109 --TSPTLRVGGAVRTGFKKVRHDVPMLSIHTETDFSAAGAAAFDERVRSALGLSPEDPPV 166

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +  E K DG    +RYEKG    A+ RGDG  GEDV+A +R I TIP  L+  +P+I+E
Sbjct: 167 EYDCELKFDGLATNLRYEKGVLTEASTRGDGVEGEDVTANVRTIRTIPLRLNGKVPDILE 226

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGE  + K DFLALN    A G KP+ANPRNAA+G LR+L+ +    R L+F+ + LG+
Sbjct: 227 VRGECIMHKADFLALNARQEAAGEKPFANPRNAAAGSLRQLDSSVTAQRTLHFYGYSLGE 286

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE FA+ Q  +L +   LGFPV +          + ++++++ + R++LP++IDG+VYK
Sbjct: 287 VSEPFAETQSGVLDRFAELGFPVAHMREVVKGPEALAAFHDKVAAARASLPFEIDGVVYK 346

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+   L+++LG  AR PRW  +HK+  ++  T++L ID+Q+GRTG LTPVARL PV +GG
Sbjct: 347 VNSLELEEELGFIAREPRWACAHKYPPEEVLTQVLGIDVQVGRTGRLTPVARLAPVYVGG 406

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHNED++              D+RVGD V+++RAG+VIP+++ ++   R    
Sbjct: 407 VTVSNATLHNEDHV----------VKDLDLRVGDTVVLRRAGDVIPEILRVVKERRPAGT 456

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P  CPIC S V+RD   K        RCTGGL C AQ    + HF +R A  I+G
Sbjct: 457 KVFEMPHVCPICGSAVIRDEEEK------DMRCTGGLVCPAQMKLSIVHFAARRAMGIDG 510

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQ-------RRQQTSTTKIENILGFGDVSVTNL 538
           LG++ +D           ++ PAD+F L              + K E  +G    +  NL
Sbjct: 511 LGEKIVDMLVDE----GLVKTPADLFGLTLEALTAPTTATAGSEKPEKRMG--PKAAANL 564

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             SI    + +L RF+F+LG RHVG   A  LA ++ +            A  N    +L
Sbjct: 565 LASIQASTHTTLARFVFALGCRHVGEATALGLANHFGTLS----------AIENASMEAL 614

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             VP VG+++A++I  F++ P N   ++AL+          EK   S +  K  V TGTL
Sbjct: 615 TGVPDVGEVVAESIYAFFREPHNRTVIDALIAR-GIRWPAVEKTAPSLVSGKTFVLTGTL 673

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A++ +T  GA V+  +SR+T  ++ G + GSKL KA++LG+ +++E + L LL
Sbjct: 674 PTLSRDEAKDRLTAQGAKVAGSVSRRTWCVVAGADAGSKLSKAEELGIPVIDEAKLLMLL 733

Query: 719 Q 719
            
Sbjct: 734 D 734


>gi|313623350|gb|EFR93577.1| DNA ligase, NAD-dependent [Listeria innocua FSL J1-023]
          Length = 671

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 362/711 (50%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N +DL  F  RI         + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVEHDTPMLSLANAFNRDDLADFDRRIRDKVG----DDISYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L       IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIPMKLKKAY--SIEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  +    + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSNLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGSEKPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 MH----LIKDVADLFFLSK------EKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +   ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKIA----------DKETLTSINDIGEKMADSXXTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +             +          K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|84393803|ref|ZP_00992550.1| DNA ligase [Vibrio splendidus 12B01]
 gi|84375600|gb|EAP92500.1| DNA ligase [Vibrio splendidus 12B01]
          Length = 670

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/709 (35%), Positives = 385/709 (54%), Gaps = 47/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  +  L  L + + YH   YY    P I D EYD L ++   I    P+L      + P
Sbjct: 3   ESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTV---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+      +VTH IP LSL+  ++ EDL  F  R+       +     F  EPK+
Sbjct: 60  SQRVGGQPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSDRAPMANLK--TFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +++ Y  G  V AA RGDG +GE+++  +R I +IP  L     PE IEVRGEV++
Sbjct: 118 DGLAVSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
            K  F  LN+  +  G K + NPRNAA+G LR+L+      R L F+ + +G       +
Sbjct: 178 PKAGFDKLNEMALKKGDKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAELS 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y+   +++  G P+    +Q ++   + +YY ++ + R  L Y+IDG+V KVD+ + 
Sbjct: 238 NSHYQRFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDALAYEIDGVVIKVDDIAA 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q  LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  ++NA
Sbjct: 298 QVTLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L            ++VGD V+++RAG+VIP++V ++++ R   A+   FP
Sbjct: 358 TLHNADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVLDRRPETARDIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + +
Sbjct: 407 DACPVCNSAVERVEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVI 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L     T   ++      G  S  N+  ++NK ++ +L 
Sbjct: 461 EQLVDREM----VETPADLFKLSAGVITVLDRM------GPKSAQNVVSALNKAKDTTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGIR VG   A +LA+++ + +      +            L+ V  +GDI+A  
Sbjct: 511 RFLYSLGIREVGEATAMNLAQHFKTLELVQAATHE----------QLVEVSDIGDIVASH 560

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +  F+   +N   VE LL+     P+I     +    +E K +V TG+L K+ R +A+  
Sbjct: 561 LTSFFSQEKNRAVVEQLLELGVNWPTIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKAA 620

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA V+  +S+KTDI+  G+  GSKL KAQ LG++I  EE  + L+
Sbjct: 621 LQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669


>gi|126640855|ref|YP_001083839.1| DNA ligase [Acinetobacter baumannii ATCC 17978]
 gi|322506977|gb|ADX02431.1| DNA ligase [Acinetobacter baumannii 1656-2]
 gi|323516844|gb|ADX91225.1| DNA ligase, NAD-dependent [Acinetobacter baumannii TCDC-AB0715]
          Length = 669

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/710 (35%), Positives = 375/710 (52%), Gaps = 47/710 (6%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   + P  K+GG
Sbjct: 1   MRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA---DSPTTKVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +       VTH +P LSL  ++N EDL  F  R+        +  + + +E K+DG  I+
Sbjct: 58  QALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP---NQKVQYEVELKLDGLAIS 114

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISKND 197
           + YE G  V    RGDG +GED++  ++ I  +P+VL      IP ++EVRGEV + K+ 
Sbjct: 115 LWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSG 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQY 255
           F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +          +
Sbjct: 175 FEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMH 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KVD+   Q+QL
Sbjct: 235 DSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG  ++N TLHN
Sbjct: 295 GFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              I  L           D+R+GD V V R G+VIPKV  +    R  +A+    P  CP
Sbjct: 355 IGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCP 403

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++   
Sbjct: 404 VCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLL 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + +     ++  ADI+ L   ++T       I   G+ SV NL D+I   +  +L RFI+
Sbjct: 458 RLD----LLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASKKTTLARFIY 509

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   AR LA  + + +         +             P VGDI A+ I +F
Sbjct: 510 ALGIRGVGETTARMLANTFQTLEALKAANVEALKKT----------PDVGDITAEWIADF 559

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +  P NI  ++ L                  +  +  V TGTL+++ R +A + +  LGA
Sbjct: 560 FLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGA 618

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 619 RVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTL 668


>gi|254480787|ref|ZP_05094034.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
 gi|214039370|gb|EEB80030.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
          Length = 677

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/716 (33%), Positives = 379/716 (52%), Gaps = 45/716 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    + E+  L  ++   +  YY    P + D+EYD   R+       FP+L      
Sbjct: 1   MTDSATQAEVLQLRTQLREWNYRYYVLDDPSVPDAEYDRYLRQLQGFEEQFPELVTE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +      +VTH +P LSL+  ++  +L  F  R+     + D  +I ++ E
Sbjct: 58  DSPTQRVGSKPLSQFSQVTHEVPMLSLDNAFDATELVDFERRLRDRLGEPDL-AIEYSCE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ Y  G     A RGDG +GED++  +R IP+IP  L  +  P+I+EVRGE
Sbjct: 117 PKLDGIAVSLLYRDGILERGATRGDGTTGEDITQNVRTIPSIPLQLRGDGYPQILEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE- 248
           +Y+    F  LN   +  G K + NPRNAA+G LR+L+      R L    + +G     
Sbjct: 177 IYMPLAGFDQLNRRALEKGEKVFVNPRNAAAGSLRQLDSRITAQRPLEMCCYSVGLVQGG 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                   +L  +   G  +N   +          YY  +   R +LPYDIDG+VYKV+ 
Sbjct: 237 QLPPEHAAVLDCLHRWGLRINAESQVVTGVQACEQYYESLAKRRDSLPYDIDGIVYKVNR 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q +LG  +R+PRW I+ KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  +
Sbjct: 297 LDQQSRLGFVSRAPRWAIARKFPAQEEMTQLLDVEFQVGRTGAITPVARLEPVFVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            +RVGD V+V+RAG+VIPKVV +++++R  D++  
Sbjct: 357 SNATLHNADEIERL-----------GLRVGDFVVVRRAGDVIPKVVSVVLDKRPGDSRAV 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FPS CP+C S   R+ +       A  RC GGL C+AQQ   +KHF SR A +I+GLG 
Sbjct: 406 EFPSHCPVCNSATEREPDE------AVIRCMGGLVCAAQQKAAIKHFASRRAMDIDGLGD 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           +   A +++L + Q  +  ++      G+ S  NL  ++   ++ 
Sbjct: 460 KLVEQMVDE----GLLENVASLYSLHKDQLMALERM------GEKSADNLLAALAASKDT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFIF+LGIR VG   A +LA+++ S+         ++A + +  L    V  VG ++
Sbjct: 510 SLPRFIFALGIREVGEATALNLARHFGSW-------PELVAASEESLLD---VDDVGPVV 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667
           A  + +F+ +   +   EAL +             S   +  +  V TG L+ + R++A+
Sbjct: 560 ADHLRQFFDSTSGMAVAEALREAGVRWPDIEIAAESVLPLAGQTWVVTGKLELMGRNEAK 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             +  LGA V+  +S KT  ++ G   GSKL KAQ LGV++++E  F+ LL+Q+  
Sbjct: 620 AALQTLGAKVAGSVSAKTHCVVAGPGAGSKLAKAQDLGVEVIDEITFVALLEQHGE 675


>gi|256847801|ref|ZP_05553246.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN]
 gi|256715490|gb|EEU30466.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN]
          Length = 674

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/716 (33%), Positives = 392/716 (54%), Gaps = 48/716 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E +++ +A+KE+  L Q++      YY+   P + D  YD   +R   +   FP+L    
Sbjct: 4   EQITLAEAKKEIGPLRQQLIQWGKEYYEQDNPSVEDYVYDRQYQRLVELEARFPELV--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG+ +  L KVTH IP LS+  ++++E+L  F  R        D   I + 
Sbjct: 61  TPDSPTQRVGGQTDTQLAKVTHDIPMLSMGDVFSVEELHAFNERQQSNL--LDTAPIEYD 118

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           LE KIDG  +++ YE G+ + A+ RG+G  GED++A    I  IP  L    P  +E RG
Sbjct: 119 LELKIDGLSLSLVYENGRLIQASTRGNGVIGEDITANAMTIKDIPHQLPE--PLSLEFRG 176

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE 248
           E Y+ K  F+ LN E  A G+  +ANPRNAA+G LR+L+P    R  L  F++ + +  +
Sbjct: 177 ECYMPKESFVKLNAEREANGQPVFANPRNAAAGSLRQLDPQVTARRNLATFMYYVPEYEK 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +    Q E LQ+MR LGF VN   +  ++   +  Y  E  + R  L Y IDG+V KV++
Sbjct: 237 LGVTTQEEALQRMRDLGFNVNPHNQTVHSEKELAEYIGEYTAQRDQLAYGIDGIVEKVND 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ +LG   + PRW I++KF  ++ +T + +I   +GRTG +TP A ++PV + G  +
Sbjct: 297 LHLQTKLGNTVKVPRWEIAYKFPPEEQATVVREIVWTVGRTGNVTPTAVMDPVQLAGTTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            +DIR+GD VL+ +AG++IP++  +I+ +R  +++ +
Sbjct: 357 SRASLHNPDYLR-----------EKDIRLGDTVLLHKAGDIIPEISRVIIEKRPVNSEEY 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C+S++V            A RC   + C AQ  E L HF SR+A NI+GLG 
Sbjct: 406 QIPTQCPVCESKLVHLDGE------VALRCVNPM-CPAQIKEGLAHFASRNAMNIDGLGP 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++  +  +     +R  AD++ L   Q  +  K      FG+ S TNL  SI+  R+ 
Sbjct: 459 KIIEQLWDKK----LVRDFADLYRLNEEQLLTLDK------FGEKSATNLLTSIDNSRHN 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER +F LGIRHVGA++AR +A+ + S     +     IA           V  +G  I
Sbjct: 509 SVERLLFGLGIRHVGAKVARLIAEKFGSLDAVMKASAEDIAA----------VDTIGPTI 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKA 666
             ++  ++ N +    ++ L             +V  SSE   +++V TG L    R +A
Sbjct: 559 GDSVATYFANTQVHQLIQELKDVQVNMEYTAASHVDLSSEWNGQRVVLTGKLAMFTRGEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +E++ + GA V+  +S+KT+++I G+  GSKL+KAQ LG+ I +E++F   +++ N
Sbjct: 619 KEWLEEHGAQVTGSVSKKTNLLIAGEKAGSKLQKAQGLGIPIWDEQRFSQAMKEDN 674


>gi|254476645|ref|ZP_05090031.1| DNA ligase, NAD-dependent [Ruegeria sp. R11]
 gi|214030888|gb|EEB71723.1| DNA ligase, NAD-dependent [Ruegeria sp. R11]
          Length = 783

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/757 (39%), Positives = 449/757 (59%), Gaps = 57/757 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +  ++L++E+AR     L+ E+   D  Y+Q   P I D++YDA KR+  A+A AFP+LA
Sbjct: 38  MDPQSLTLEEARPLFEQLQDELRAADLAYHQKDAPEISDADYDAKKRQYRALAEAFPNLA 97

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
                   L+ +G  +     K+TH+   +SL   ++ +D+  F   + ++        +
Sbjct: 98  AEATE---LDTVGAPVASGFGKITHAQRMMSLGNAFDDDDVADFDKGLRKYLGLSASEPL 154

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE G  V+AA RGDG  GE+V+A  R I  IP+ +  N P I+E
Sbjct: 155 AYTAEPKIDGLSLSLRYENGTLVHAATRGDGAVGENVTANARTIDDIPQEIP-NAPAILE 213

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN+   A G K +ANPRNAA+G LR+L+      R L FF +  G+
Sbjct: 214 VRGEVYMSHEDFAALNERHEARGGKTFANPRNAAAGSLRQLDAEITRARPLRFFAYSWGE 273

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE   + Q++ L ++R +GF  N   R   +   ++++Y +++  R+TL YDIDG+VYK
Sbjct: 274 LSEPLGETQFDALARLRKMGFQTNPLTRHCTSVADLIAHYRQIEEQRATLGYDIDGVVYK 333

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD  +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+PV +GG
Sbjct: 334 VDALALQDRLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQPVTVGG 393

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ +++R   A
Sbjct: 394 VVVSNATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLSKRPDGA 453

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + ++FP+ CP C S  VR+      +  A  RCTGGL C AQ +E+LKHFVSR AF+I+G
Sbjct: 454 EAYAFPTTCPQCDSPAVRE------EGDAVRRCTGGLICPAQAVEKLKHFVSRKAFDIDG 507

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F+  E    +I+ PADIF+LQ R   + TK++N  G+G+ S  NL+ +I  +
Sbjct: 508 LGAKQIEMFYGDET--LAIKTPADIFSLQARDAQNLTKLKNRDGWGETSAANLFAAIEDK 565

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN----NIIAHNNDD------- 594
           R I+L R IF LGIRHVG   AR LA +Y+ +   A+ ++      +AH   D       
Sbjct: 566 REIALARLIFGLGIRHVGEVGARDLALHYMDWDAMAEAVDTARPAALAHRAADEAEDAER 625

Query: 595 --------------------------------WLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
                                           W  L  +  +G  +  ++ + + N    
Sbjct: 626 IAAAQANRRARIKEVRDSAIAQCDVPPAARAAWEDLTGIDGIGATLGLSLSDAFANADER 685

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            A +AL   ++       +   S +  K +VFTGTL+K+ R +A+     LGA V+  +S
Sbjct: 686 AAFDALRAYLTIVPPEAPQK-DSPVAGKTVVFTGTLEKMTRAEAKARAEGLGAKVAGSVS 744

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +KTDI++ G   GSK +KA+ LG++I++E+ +L L++
Sbjct: 745 KKTDILVAGPGAGSKEQKARDLGIRILDEDGWLTLIE 781


>gi|223986795|ref|ZP_03636777.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM
           12042]
 gi|223961228|gb|EEF65758.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM
           12042]
          Length = 663

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/707 (32%), Positives = 372/707 (52%), Gaps = 47/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
              + +L ++++ ++  Y+    P + D+EYD L R    +    P+L    DPN P  +
Sbjct: 3   EDRILALRRQLNQYNYEYHVLDHPTVSDAEYDQLMRELITLEQQHPELF---DPNSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K+TH  P LSL  ++N E+L +F  +      + +   + +  E KIDG 
Sbjct: 60  VGGQVLEEFNKITHKRPMLSLGDVFNKEELFEFARK-----AEAEVGPVDYCCECKIDGL 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ Y+ G+F YA  RGDG  GEDV+  +R I +IP  +       +EVRGEVY+ K  
Sbjct: 115 AMSLNYQGGRFQYAVTRGDGVVGEDVTHNVRTIKSIPMEIE--YEGELEVRGEVYMPKAS 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN +    G + +ANPRNAA+G +R+L+      R L+   + + +  ++      E
Sbjct: 173 FERLNQKRRENGEEEFANPRNAAAGSIRQLDSKVAASRGLDALWYHVPQGPQLGHHQHSE 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LGF +N   R       +  +  ++  +RS LPY+IDG+V KV+++  Q+QLG
Sbjct: 233 SLDFIHSLGFRINPLNRLCRNIEEVWQFVEDLTLMRSDLPYEIDGIVIKVNDYEKQQQLG 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++P+W I++KF  ++A TRL +I + +GRTG +TP A+L PV + G  +  A LH+E
Sbjct: 293 FTAKTPKWAIAYKFPAEEAVTRLENIFVTVGRTGKITPNAQLTPVRLAGTSVGFAQLHDE 352

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V+V +AG++IP++V  +  +R     P+ FP  CP+
Sbjct: 353 DMIRD-----------KDIRIGDYVIVHKAGDIIPEIVASVPEKRDGLQVPYVFPKVCPV 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   +VR  +       A H C     C A+ +E + HF SRDA NI+GLG ++++ F  
Sbjct: 402 CGMPLVRYPDE------AHHFCINN-DCPARVVESIAHFCSRDAMNIDGLGVKRVELFHS 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +    DI+ L+                G  S  NL ++I   +  SLE+ ++ 
Sbjct: 455 Q----GWLNTVEDIYNLKDHYDEILE----TPKMGKKSADNLLEAIENSKQNSLEKLLYG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G + A+ LA  + + Q   Q            +  L  +  +G I AQ +++F+
Sbjct: 507 LGIRQIGEKAAKILAYRFETMQALMQAT----------YEELEEIKDIGAITAQTVLDFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            +  N   +EAL+      I   E+ V +    K +V TGTL  + R +AQ  +  LGA 
Sbjct: 557 HDEANQHLIEALIGHGLNMICLKEEQVETIFTGKTVVLTGTLATMTRPEAQALLEHLGAT 616

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           VS  +S++TD +I G+N GSKL KAQ LGV  M E +F+  + ++  
Sbjct: 617 VSGSVSKRTDFVIYGENAGSKLTKAQSLGVATMTESEFMEEVNRHAE 663


>gi|109898096|ref|YP_661351.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c]
 gi|122972028|sp|Q15UZ1|DNLJ_PSEA6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|109700377|gb|ABG40297.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c]
          Length = 677

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 401/713 (56%), Gaps = 51/713 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ALS  Q    L+ +   I+ ++  YY    P + D+EYD L R    I +  PDL     
Sbjct: 4   ALSPAQ---RLTQIINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIENNHPDL---RS 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  K+GG    +  +V H +P LSL+  ++ +D++ F  RI    +    + I F+ 
Sbjct: 58  PDSPSQKVGGAALSAFEQVEHEVPMLSLDNAFDEDDMQAFEKRIKDRLKIS--SEISFSC 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRG 189
           EPK+DG  ++I YE G+ V AA RGDG  GE+++  +R I  +P  L   N P  +EVRG
Sbjct: 116 EPKLDGLAVSILYENGQLVRAATRGDGRVGENITTNVRTIANVPLRLRGENFPSRLEVRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS- 247
           EV +++  F+ LN+  I  G+KP+ NPRNAA+G LR+L+P     R L F+ + LG    
Sbjct: 176 EVIMTRAGFVTLNEAQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVEN 235

Query: 248 --EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             +   +     L ++   G P++  +         ++Y++++  +RS L YDIDG+V+K
Sbjct: 236 EQQPLGETHSSRLAQLSEWGLPLSKELEVTQGATQCLTYFHKIGELRSQLSYDIDGVVFK 295

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD  ++Q++LG  AR+PRW I+HKF  ++  + LLD++ Q+GRTG +TPVARLEP  +GG
Sbjct: 296 VDNIAMQQELGFVARAPRWAIAHKFPAQEEMSTLLDVEFQVGRTGAITPVARLEPTFVGG 355

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHN+D I  L            I++GD V+++RAG+VIP++V I+ ++R  DA
Sbjct: 356 VTVSNATLHNQDEINRL-----------GIKIGDSVIIRRAGDVIPQIVAIVADKRPDDA 404

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +   FP  CP+C S + +          A  RCTGGL C AQ+ E +KHF SR A +++G
Sbjct: 405 KDIVFPESCPVCDSAIEKLEGE------AVARCTGGLYCKAQRKEAMKHFASRKALDVDG 458

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++    +E     ++ PAD F L     +S  ++      G+ S  NL +++ K 
Sbjct: 459 LGDKLIEQLVDAEM----VKSPADFFALDIAPLSSMERM------GEKSAVNLVNALEKS 508

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +L +F++SLGIR VG   A++LA+++L+ +   Q           D  +L  V  VG
Sbjct: 509 KKTTLAKFLYSLGIREVGEATAQNLAQHFLTLEAIEQA----------DLDALQAVSDVG 558

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
            I+AQ +  F++   N+  + ALL+         +  +    +  +  V TGTL  + R+
Sbjct: 559 VIVAQHVFNFFKEEHNLEVISALLEAGVHWPKIEKLALDELPLAGQVYVLTGTLNVMDRN 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            A+  +  LGA VS  +S KTD ++ G+  GSKL KAQ LGVK+MNE+  L +
Sbjct: 619 SAKAKLQSLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDDMLAM 671


>gi|83312957|ref|YP_423221.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1]
 gi|123726860|sp|Q2W0G3|DNLJ_MAGMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|82947798|dbj|BAE52662.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1]
          Length = 698

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/722 (40%), Positives = 435/722 (60%), Gaps = 39/722 (5%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP+EAL+  +AR E + L + I+  D+ Y+    P + D  YD  KRR   I   FP+L
Sbjct: 1   MIPVEALTPFEARIEHAELVETIARWDEAYHAKDAPEVPDDVYDGAKRRLARIEGRFPEL 60

Query: 66  ARSEDPNGPLN-KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           A       P+  K+G   +    K+ H++P LSL+  +  ED+ +F  ++ RF    D+ 
Sbjct: 61  AAK----SPIRDKVGAAPSEGFGKLVHAVPMLSLDNAFAPEDVAEFDAKVRRFLGLGDEA 116

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIP 182
            + +  EPKIDG  I +RYE G+FV AA RGDG  GEDV+  +   P   +PR L  + P
Sbjct: 117 PLAYVAEPKIDGLSINLRYEGGRFVSAATRGDGAEGEDVTRNLETFPATQLPRTLGPDAP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            +IE+RGEVY++K DFLALN    A G K +ANPRNAA+G LR+L+P    +R L+ F +
Sbjct: 177 AVIEIRGEVYMTKADFLALNQRQEAAGEKLFANPRNAAAGSLRQLDPKVTASRPLSLFAY 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +G+ S   A   +E L++++  GF VN  +R+ +   G++S Y  +   R+TL YDIDG
Sbjct: 237 AMGEASAPPAASHWEYLERLKAWGFVVNPLIRRCDGVAGLLSAYESLGEARATLAYDIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD+  LQ++LG  +RSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL PV
Sbjct: 297 IVYKVDDIELQRRLGFVSRSPRWAIAHKFPAEQATTLLEAIDIQVGRTGALTPVARLTPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           N+GG +++NATLHNED I             +D+R+GD V+V+RAG+VIP++V ++  + 
Sbjct: 357 NVGGVVVSNATLHNEDEIAR-----------KDVRIGDTVIVQRAGDVIPQIVGVVPGK- 404

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              A PF +P  CP+C +  VR             RCTGGL C AQ  ERLKHFVSR+AF
Sbjct: 405 PRGAVPFVYPETCPVCGAHAVRPEGE------VIRRCTGGLTCEAQAKERLKHFVSRNAF 458

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGDVSVTNLYD 540
           +IEGLG++ ++F ++       +R PADIF L+ R       ++EN  G+G  S   L++
Sbjct: 459 DIEGLGEKNIEFLWEK----GWVRGPADIFRLKARNDAELLQRLENFEGWGKRSTEKLFE 514

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           SI  R  + LERFIF+LGIR +G   A+ LA++Y S+  +   +   +A   +    L  
Sbjct: 515 SIKTRSAMGLERFIFALGIRQIGEATAKRLARHYGSFGAWRAAM---LAGTEEARAELTS 571

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIENKKLVFT 655
           +  +G  +A  +++F+    N+ AV+ L+  ++   G  E     ++ +S +  K +VFT
Sbjct: 572 IEDIGPSVAGDLLDFFSEEHNVQAVDDLVAAMAALDGAVEDAKVIESSASPVAGKAVVFT 631

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R +A+     LGA V   +S+KTD ++VG + GSK  +A +LG+  ++E+++L
Sbjct: 632 GTLVTMTRPEAKARAEALGAKVVGSVSKKTDYVVVGADAGSKAAEAVKLGIATLSEQEWL 691

Query: 716 FL 717
            L
Sbjct: 692 AL 693


>gi|297717812|gb|ADI50049.1| DNA ligase [Candidatus Odyssella thessalonicensis L13]
          Length = 676

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/698 (39%), Positives = 412/698 (59%), Gaps = 26/698 (3%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + I+YHD+ Y+Q   P I D+ YDAL  R   I + FPDL R    + P  ++G  ++
Sbjct: 1   LAKTIAYHDELYFQKDMPQISDAAYDALVVRNRQIENLFPDLRRE---DSPSKRVGAPVS 57

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               KV H IP LSLE  +  +D+  F  R+ RF     D       EPKIDG    + Y
Sbjct: 58  KGFKKVKHRIPMLSLENAFTSDDVINFFERVRRFLSLPSDQEFPIVAEPKIDGLSAALHY 117

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALN 202
           ++GK   AA RGDG  GED++  +R I  +P+ L   N+PE +EVRGE+Y++++DF ALN
Sbjct: 118 QRGKLRLAATRGDGSEGEDITENVRCIIDVPQTLIGKNVPESLEVRGEIYMNRSDFFALN 177

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQYEMLQKM 261
            +        +ANPRNAA+G +R+L+PT   R  L FF +     S       +E L+ +
Sbjct: 178 QQRQQESEPEFANPRNAAAGSVRQLDPTVTARRPLRFFAYYYDAISGDTTMTHHEALENL 237

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           R  GF VN  ++   +   +  YYN + + R+ LPYDIDG+VYK+D    Q++LG   R+
Sbjct: 238 RRWGFTVNPEIQLCLSIAQLQDYYNSINARRADLPYDIDGVVYKIDALQWQRRLGSVGRT 297

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PR+ ++HKF  ++A T L DI IQ+GRTG+LTPVA L+PV +GG +++ ATLHN D I  
Sbjct: 298 PRYALAHKFEAEKAETILEDIAIQVGRTGVLTPVAHLKPVTVGGVVVSRATLHNADEIAR 357

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +D+RVGD V+++RAG+VIP++V ++  +R P++Q F FP+ CP C   +
Sbjct: 358 -----------KDVRVGDHVIIQRAGDVIPQIVSVVKEKRLPESQSFDFPATCPACGGEI 406

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           V            A RC   L C AQ +ERLKHFVSRDAF+IEGLG + ++ F++     
Sbjct: 407 VYVPGE------VARRCMNRLLCPAQAVERLKHFVSRDAFDIEGLGNRNIEAFYEE---- 456

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I  P DIFTL  R + S T +    G+G  S  NL+++I  RR I+L+RFI++LGI  
Sbjct: 457 GLIHSPVDIFTLAARDRESLTPLRAKEGWGSQSAANLFEAIENRRTITLDRFIYALGIPQ 516

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG+  A+ LA++Y +  N    +        D ++ L+ +  +G  +A+ I+ F+    N
Sbjct: 517 VGSVTAKLLARHYHTLPNLLNTLQQAQDPTTDAYVDLLSLDGIGKNMAEDILSFFHEAHN 576

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           +  ++AL  E+S      E + +S +  K +VFTGTL ++ R +A+    +LGA V+  +
Sbjct: 577 LKVIDALSHELSIPAYALEMSTTSAVSGKTVVFTGTLTRMSRAEAKATAERLGAKVAGSV 636

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S+KTD++IVG + GSK   A +LGV++++E Q++ L+ 
Sbjct: 637 SKKTDLVIVGADAGSKARAAAELGVQVLDENQWMALIA 674


>gi|300114089|ref|YP_003760664.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113]
 gi|299540026|gb|ADJ28343.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113]
          Length = 675

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 384/712 (53%), Gaps = 47/712 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +   A+  + +L++ I+ +D  YY    P+I DSEYD L R    +   +P+L      +
Sbjct: 3   APAPAKDRIQALKELINNYDYAYYVMDNPLIPDSEYDRLIRELRVLEENYPELITL---D 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G +    L +V H +P LSL   ++  +L  F  R+           + +  EP
Sbjct: 60  SPTQRVGAKPIKFLGEVKHEVPMLSLNNAFHEGELVDFHRRVKARLG---IERVDYAAEP 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEV 191
           K+DG  +++ Y+ G  V  A RGDG +GEDV+  IR IPT+   L     P ++EVRGEV
Sbjct: 117 KLDGLAVSLLYQDGVLVQGATRGDGVTGEDVTHNIRTIPTVSLCLRDEKAPSLLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS-EI 249
           Y+ +  F  LN E I  G KP+ NPRNAA+G LR+L+      R L  F +G+G+    I
Sbjct: 177 YMPRKGFERLNREQIVKGEKPFVNPRNAAAGSLRQLDSRIAASRPLAIFCYGIGQVEQGI 236

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E+L +++  G  +   ++      G   YY  M  +R  LPY+IDG+V+KVD  
Sbjct: 237 LPDRHSEVLCQLKQWGLRILPHLQVVEGLAGCKKYYQHMLDMRDKLPYEIDGVVFKVDYL 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ LG  AR+PRW +++KF  ++  T++LDI++Q+GRTG LTPVA L+P+ +GG  ++
Sbjct: 297 NQQQTLGSLARAPRWALAYKFPAQEELTQILDIEVQVGRTGALTPVAWLQPIFVGGVTVS 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNE  I+            +DIR+GD V V+RAG+VIP++V +++ ER P ++ F 
Sbjct: 357 KATLHNEGEIRR-----------KDIRIGDTVYVRRAGDVIPEIVKVVLEERLPGSRLFQ 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C S +V++         A  RC+GGL C AQ+ E +KHF +R A +I GLG +
Sbjct: 406 MPRQCPVCDSEIVKEEGR------AIARCSGGLYCPAQRKEAVKHFAARRAMDINGLGDK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   K       I+  AD++ L + Q     ++         S  NL ++I + ++ +
Sbjct: 460 LVEQLVKR----GLIKDVADLYDLTKEQLVGLERMGQ------KSAANLINAIQQSKHTT 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+++LGIR VG   A+ L K + S    A      +           +V  +G ++A
Sbjct: 510 LPRFLYALGIREVGEATAQVLTKEFGSLAALASASEERLQ----------QVVDIGPVVA 559

Query: 610 QAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             I  F++   N   +++L +  V      H+  +   +  +  V TGTL+ + R +A+E
Sbjct: 560 AHIAAFFRQLHNCQVIQSLQEAGVCWPELEHKAPIVRPLSGRTFVLTGTLESMTREQAKE 619

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LG  VS  +S  TD +I+G  PGSKL KA+ L + I++E  FL LL  
Sbjct: 620 RLQALGGKVSGSVSPHTDYLIIGAKPGSKLIKARNLEITILDETNFLNLLDD 671


>gi|56751245|ref|YP_171946.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 6301]
 gi|81299088|ref|YP_399296.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 7942]
 gi|81596046|sp|Q5N2P4|DNLJ_SYNP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123728245|sp|Q31RL0|DNLJ_SYNE7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56686204|dbj|BAD79426.1| DNA ligase [Synechococcus elongatus PCC 6301]
 gi|81167969|gb|ABB56309.1| DNA ligase, NAD-dependent [Synechococcus elongatus PCC 7942]
          Length = 679

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/710 (32%), Positives = 346/710 (48%), Gaps = 44/710 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +     +  S L Q +      YY   +P++ D+ YD L R    +    P L     P+
Sbjct: 9   TTTAIAQRASELRQLLQQASYAYYVLDQPVMEDAVYDRLYRELQDLEQQHPSLI---TPD 65

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G +       V H IP  SLE  ++ E+LR +  R  +           +  E 
Sbjct: 66  SPTQRVGEQPATGFESVQHRIPLYSLENAFDAEELRSWDQRWRKLAPDVP-ADAGYVCEL 124

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191
           KIDG  I + YE G  V  A RGDG  GE+++A +R I +IP  L  +  PE +EVRGE 
Sbjct: 125 KIDGAAIALSYENGLLVRGATRGDGTRGEEITANLRTIKSIPLRLQTDQPPEWLEVRGEA 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++S   F  LN E    G   +ANPRNAA+G LR+L+P  +  R L+FF + +   ++  
Sbjct: 185 FLSLTRFKQLNTEREKHGEALFANPRNAAAGTLRQLDPRIVAERQLDFFAYSIQGPNDWA 244

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q   L  ++ LGF V    +   T   +  Y+++  + R  LPY  DG+V K+    
Sbjct: 245 NLDQAASLDCLQSLGFRVEPHRQTCPTLAEVEQYFSDWDARRRDLPYLTDGVVVKLQSRR 304

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   + PRW I+ K+   +A T+L  + +Q+GRTG LTPVA   PV + G  ++ 
Sbjct: 305 LQDELGFTQKFPRWAIALKYPADEAPTQLQHVTVQVGRTGALTPVAEFSPVALAGTTVSR 364

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D ++ L           D+ +GD ++V++AGE+IP+VV ++ + R  DA+P   
Sbjct: 365 ATLHNADRLREL-----------DLHIGDTIVVRKAGEIIPEVVRVLTDLRPADAKPVVL 413

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C   V R          A  RC     C A     L H+ SRDA +IEGLG++ 
Sbjct: 414 PEKCPECGQPVQRPEEE------AVTRCVNS-TCPAIVRGALTHWASRDALDIEGLGEKL 466

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D           +   AD++ L      S  +      FG+ S  NL  +I K R    
Sbjct: 467 VDQLVSK----GLVNAIADLYRLDAPLLASLER------FGEKSAQNLVQAIAKSRQQPW 516

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++ LGIRHVG+  A++LA  + S +  AQ   + +A           V  +G  IA 
Sbjct: 517 SRVLYGLGIRHVGSVNAKNLAATFTSAEALAQATPDELAA----------VYGIGSEIAD 566

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           A+ +++    N   + AL +      G      S  +  +  V TGTL  + R++A+  +
Sbjct: 567 AVHQWFTVATNQNLIAALEQAGLQLHGEAASPRSQALAGQTFVLTGTLPTLSRNEAKALI 626

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              G  VS  +S+KT  ++ G+  GSKLEKA  L +  +NE Q L LL Q
Sbjct: 627 EAAGGKVSGSVSKKTSYVVAGEEAGSKLEKAIALNIPQLNETQLLDLLAQ 676


>gi|254510866|ref|ZP_05122933.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11]
 gi|221534577|gb|EEE37565.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11]
          Length = 750

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/758 (39%), Positives = 435/758 (57%), Gaps = 57/758 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +   +  L+ E A++EL+ L  E+   +  Y+    P + D +YDALKRR   I   FPD
Sbjct: 3   KTTAVADLTEEDAQQELARLAAELLRANQLYHAEDAPELSDGDYDALKRRNAEIEARFPD 62

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R+   + P  ++G   +    KV+H++  +SL   ++  D+  F   I ++     D 
Sbjct: 63  LKRT---DSPSEQVGARPSDGFAKVSHAMRMMSLGNAFDDTDIVDFDRSIRKYLGLTGDA 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + FT EPKIDG  +++RYE+G+ V AA RGDG  GE+V+A  R +  IP  ++   P++
Sbjct: 120 PLAFTAEPKIDGLSLSLRYEQGELVQAATRGDGEVGENVTANARTVADIPHRIA-GAPDV 178

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243
           +EVRGEVY+S  DF ALN      G K +ANPRNAA+G LR+L+      R L FF +  
Sbjct: 179 LEVRGEVYMSHQDFEALNTRQAETGGKTFANPRNAAAGSLRQLDSEITRARPLKFFAYAW 238

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+ S   A+ Q   +Q+++  GF +N   R   T   ++ +Y  +++ R+TL YDIDG+V
Sbjct: 239 GELSAPLAETQMGAIQRLKAFGFQINALTRLCATPSQMLDHYRRIEAQRATLGYDIDGVV 298

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+  LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +
Sbjct: 299 YKVDDLGLQSRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLHPVTV 358

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++NATLHNEDYI G DA G V+R G+DIRVGD V V RAG+VIPK+ D+ +++R  
Sbjct: 359 GGVVVSNATLHNEDYIAGRDAKGGVIRDGKDIRVGDWVQVYRAGDVIPKLADVDLSKRPA 418

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DAQP++FP+ CP C S   R+      +  A  RCTGGL C AQ +E+LKHFVSR AF+I
Sbjct: 419 DAQPYAFPTTCPECGSDATRE------EGDAVRRCTGGLICPAQAVEKLKHFVSRKAFDI 472

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG +Q++ F+   DP   I  PADIFTLQ R   +  +++N  G+GD S  NL+++I 
Sbjct: 473 EGLGAKQIEMFY--GDPVLPINTPADIFTLQERDTKALARLKNRDGWGDTSANNLFEAIE 530

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------ 585
            +R I   R +F+LGIRHVG   A+ LA +Y  +   A  I+                  
Sbjct: 531 DKRKIPFARLLFALGIRHVGEVGAKDLALFYRDWDVMAASIDTARPAALAQRAADEAEEV 590

Query: 586 -------------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
                                     + A     W  LI +  +G  +  ++ + + N  
Sbjct: 591 ERIAAADEGRRAKLKDARDSVIAGREVPADAASAWADLIGIDGIGATLGLSLSDAFANAD 650

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
              A + L K +   +        S +  K +VFTGTL+K+ R +A+     LGA VS  
Sbjct: 651 ERAAFDTLRKHLEI-VAPDAPASDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGS 709

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S+KTD+++ G   GSK +KA  LG++ ++E+ +L L+
Sbjct: 710 VSQKTDLLVAGPGAGSKAKKAADLGIRTLDEDGWLQLI 747


>gi|213962174|ref|ZP_03390438.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno]
 gi|213955180|gb|EEB66498.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno]
          Length = 663

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/705 (33%), Positives = 373/705 (52%), Gaps = 49/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E++ H+  YY    P I D E+D   +   A+  A P+     D N P  +
Sbjct: 2   KEKIQQLREELNQHNYNYYILDNPTISDYEFDQKLKELQALEQAHPEF---YDENSPTVR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  S   V H     SL+  ++ EDL ++  RI +       + I FT E K DG 
Sbjct: 59  VGGTITKSFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTLGS---DQINFTCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + YE GK   A  RGDG  G+D++A +R I ++P  L  + PE   +RGE+ + K  
Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E IA G  P+ NPRN ASG L+  +  ++  R L+  ++ L   + +  K Q+E
Sbjct: 176 FENLNKERIAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGNTGV--KSQFE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V N  +  ++   ++ + NE  + R TLPY+ DG+V KVD  + Q++LG
Sbjct: 234 SLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVIKVDSIAQQEELG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  +Q  T L  I  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTILESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNA 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+GD V V++ GE+IPK+V + +++R  DAQP  + + CP 
Sbjct: 354 DQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVQYITHCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + ++R+         A H C    +C  Q   +++HF+SR A +IEGLG++ ++  F+
Sbjct: 403 CSTELIRNEGE------AQHYCPNTYSCPPQITGKIQHFISRKAMDIEGLGEETVEQLFR 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I   AD++ +   +     ++         S  N+   I K + I  ER +F+
Sbjct: 457 ----AGIIHTYADLYEVTVEKLLPLERMAQ------KSAENIVKGIQKSKEIPFERVLFA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LA++Y + +          A  N     L+ V  +G+ IA ++V F+
Sbjct: 507 LGIRYVGETVAKKLARHYKNIE----------ALENATIEQLVEVDEIGNQIATSVVNFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  N   ++ L           E        ++    V +G      R + +  + Q G
Sbjct: 557 ADDYNRKLIDRLKSYGLQFALSEESTEGHTDTLKGLTFVVSGVFHLYSRDELKALIEQHG 616

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F  L+
Sbjct: 617 GKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEFQSLI 661


>gi|23013561|ref|ZP_00053441.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 696

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/725 (39%), Positives = 432/725 (59%), Gaps = 41/725 (5%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
            R  +PI+ L+  +AR E + L +++   D+ Y+    P++ D  YD  KRR   I   F
Sbjct: 2   SRPPVPIDVLTPFEARIEHAELVEKLVSWDEAYHGQDAPLVPDDVYDGAKRRLSGIEARF 61

Query: 63  PDLARSEDPNGPLN-KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           P+LA       P+  K+G   +    K+ H++P LSL+  ++ ED+ +F  ++ RF    
Sbjct: 62  PELAAK----SPIKDKVGAAPSEGFGKLVHALPMLSLDNAFSPEDVAEFDAKVRRFLGLS 117

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP--TIPRVLSL 179
           D+  + +  EPKIDG  I +RYE G FV AA RGDG  GEDV+  +   P   +PR L  
Sbjct: 118 DEAPLAYVAEPKIDGLSINLRYENGNFVSAATRGDGAEGEDVTRNLDTFPETQLPRRLGP 177

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           + P +IE+RGEVY++K DFLALN    + G KP+ANPRNAA+G LR+L+P    +R L+ 
Sbjct: 178 DAPAVIEIRGEVYMTKADFLALNQRQESAGEKPFANPRNAAAGSLRQLDPKITASRPLSL 237

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F + +G+ S + A   +  L++++  GF VN  +R+ +   G+++ Y  +   R+ LPYD
Sbjct: 238 FAYAMGEASSLPAASHWGYLERLKAWGFVVNPLIRRCDGVAGLLAAYGSLGEARAALPYD 297

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD+  LQK+LG  +RSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL
Sbjct: 298 IDGIVYKVDDLELQKRLGFVSRSPRWAIAHKFPAEQATTLLEAIDIQVGRTGALTPVARL 357

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PVN+GG +++NATLHNED I             +D+RVGD V+V+RAG+VIP++V ++ 
Sbjct: 358 TPVNVGGVVVSNATLHNEDEIAR-----------KDVRVGDTVIVQRAGDVIPQIVGVVP 406

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +      PF +P  CP+C +  VR             RCTGGL C AQ  ERLKHFVSR
Sbjct: 407 GK-PRGPTPFVYPDTCPVCGAHAVRPEGE------VIRRCTGGLTCDAQAKERLKHFVSR 459

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +AF+IEGLG + ++F +        +R PA IFTL+   Q    K+EN  G+G  S   L
Sbjct: 460 NAFDIEGLGDKNIEFLWDK----GWVRKPAHIFTLEAANQDRLQKLENFEGWGKRSTEKL 515

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           ++SI  R ++ LERFIF+LGIR +G   A+ LA++Y  +Q +   +        +    L
Sbjct: 516 FESIRSRASMGLERFIFALGIRQIGEATAKRLARHYGGFQAWRDAM------TEEGKDEL 569

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLV 653
             +  +G  +A  +++F++   N  A++ L++ +          +  +  +S I  K +V
Sbjct: 570 TSIEDIGPSVAADLLDFFKEEHNRAALDDLVRAMEALGGGVQDAKRIEAFASPIAGKAVV 629

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTGTL  + R +A+     LGA V   +S+KTD ++VG + GSK  +A +LG+ I++E++
Sbjct: 630 FTGTLVTMTRPEAKARAEALGAKVVGSVSKKTDYVVVGADAGSKATEAAKLGLTILSEQE 689

Query: 714 FLFLL 718
           +L L+
Sbjct: 690 WLDLI 694


>gi|260584784|ref|ZP_05852529.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633]
 gi|260157441|gb|EEW92512.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633]
          Length = 668

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/708 (31%), Positives = 372/708 (52%), Gaps = 52/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             +++  L ++++     YY   +P + D EYD        +   +P L  S   + P  
Sbjct: 5   IEQKVQQLREQLNRWSHEYYVQDRPTVTDHEYDETYHELVRLETEYPQLVTS---DSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG +     KVTH  P LSL   ++ EDL+ F  RI +   +    +I +  E KIDG
Sbjct: 62  RVGGVVLEGFEKVTHQNPMLSLSNAFSKEDLQAFDDRIKKLTNR----TIDYVCELKIDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y+ G+ V  A RGDG  GED++  IR + ++P  LSL  P  IEVRGE Y+ K 
Sbjct: 118 LSVALTYQDGQLVLGATRGDGVIGEDITHNIRTVKSVP--LSLEHPWSIEVRGECYMPKK 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN      G + +ANPRNAA+G LR+L+      R L  F++       +    Q 
Sbjct: 176 SFQQLNQLREEEGLEVFANPRNAAAGSLRQLDSKVAASRNLAVFLYQSPSVETLEVASQM 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L+KM+ LGF  N      ++   + ++  +M   R+ LPY+IDG+V KV++F  Q+++
Sbjct: 236 ELLEKMQALGFVTNQESVLCHSIDEVWAFIEKMTVERNNLPYEIDGIVIKVNDFKAQEEI 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++P+W I++KF  ++A T + DI+  +GRTG++TP A ++ V + G  +  A+LHN
Sbjct: 296 GFTVKAPKWAIAYKFPAEEAQTIVRDIEWTVGRTGVVTPTAVMDAVFLAGTTVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+            RDIR+GD V++ +AG++IP+V  +I+++R    +P+ FP  CP
Sbjct: 356 VDLIR-----------ERDIRIGDTVVIHKAGDIIPEVTRVILDKRPEGLEPYEFPKECP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +V            A RC     C A   E L HFVSRDA N+ G+G + +   F
Sbjct: 405 SCSNPLVHLEEE------VALRCMNP-KCPALLKEGLTHFVSRDAMNMSGVGTRIIHQLF 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +S      ++  AD++ L   Q  +  KI+      + S   +  +I   +  SLER + 
Sbjct: 458 ES----GLVQDVADLYHLTMEQLLTLDKIK------EKSAQKILQAIETSKQNSLERLLT 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR+VG++ A+ LA ++ + +N  +               L+ +  +G +IA +++ +
Sbjct: 508 GLGIRNVGSKAAKDLAMHFETMENLQKAT----------VEELVAIEGLGLVIAHSVLAY 557

Query: 616 YQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +        +E L +           +   +  S +  K +V TGTL+++ R +A+E + 
Sbjct: 558 FNQETVQDMLEELKEAGVNMRYLGKAKVAISEDSLLAGKTVVLTGTLEQMTRQEAKEAIE 617

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LG  V+  +S+KTDI+I G   GSKL KA+ LG+ + +EEQF  +++
Sbjct: 618 SLGGKVTGSVSKKTDIVIAGAQAGSKLTKAESLGILVWDEEQFRTMIE 665


>gi|296330120|ref|ZP_06872602.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673365|ref|YP_003865037.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296152709|gb|EFG93576.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411609|gb|ADM36728.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 668

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/715 (34%), Positives = 399/715 (55%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++    L + I+ +   YY   +P + D+EYD L +   AI    PDL     P
Sbjct: 1   MDKETAKQRADELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KVTH  P LSL   +N +D    +    R  ++   + + + +E
Sbjct: 58  DSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDDVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  L +     IEVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIP--LKMKRDLSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN+E I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 YMPKRSFETLNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  +GF  N   ++  +   +++  +E ++ R+ LPY+IDG+V KVD   
Sbjct: 232 VETQSQGLDFLDEIGFKTNQERKKCGSIEEVIALIDEFQAKRADLPYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV+++V +R  + + FS 
Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L + Q     ++      G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFEEN----LVRNVADLYKLTKEQVIQLERM------GEKSTENLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  +     +          + +  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEEL----------LAIDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           A++ ++     +  +  L +    +  +  K V +E        K +V TG L+++ R+ 
Sbjct: 554 AVITYFHKEEMLDLLNELQELGVNTHYKGPKKVKAEESDSYFAGKTIVLTGKLEELSRND 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+ TD++I G+  GSKL KAQ+L +++ NEEQ +  L++
Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668


>gi|159028322|emb|CAO87220.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 669

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/707 (31%), Positives = 369/707 (52%), Gaps = 47/707 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++    L+ E+      YY    P I DS YD L R  + I   +P L     P+ P 
Sbjct: 6   EIQQRCQQLKTELQRASYAYYVLDDPFISDSVYDQLYRELEDIEKRYPQLI---TPDSPT 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +++     V H+IP  SLE  +N+E+L K+ +R  R+  +  D    +  E KID
Sbjct: 63  QRVGDKISSQFVSVRHNIPLYSLENAFNLEELNKWGSRWQRYVNETQDTE--YVCELKID 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           G+ + + YE G  V    RGDG +GED++  +R I +IP  L++ N P I+EVRGE ++ 
Sbjct: 121 GSALALTYENGFLVRGVTRGDGVTGEDITPNVRTIRSIPLRLNIDNPPAIVEVRGEAFLP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
            + F  +N E    G   +ANPRNAA+G LR+L+P  +  R L FF + L    +     
Sbjct: 181 LDTFDKINQEREEKGESLFANPRNAAAGTLRQLDPKIVDKRRLQFFAYTL-HLDDNHITT 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q++ L ++  +GF VN   +   +   +  YY + +  R  L Y  DG+V K+++   Q 
Sbjct: 240 QWQSLDRLETMGFLVNPHRQLCPSLQEVAQYYQDWQEKRHQLAYMTDGVVVKINDLQRQN 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG   + PRW I+ K+  ++  T + DI + +GRTG +TP+A +EPV + G  +  ATL
Sbjct: 300 RLGFTQKFPRWAIALKYPAEEVPTVVKDIIVNVGRTGAVTPMAVMEPVQVAGTTVQRATL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D +  L           DIRVGD V++++AGE+IP+VV I+   R     PF  P+ 
Sbjct: 360 HNSDRVAEL-----------DIRVGDTVIIRKAGEIIPEVVRILPELRPSQTLPFQMPTN 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP CQS +VR +        A  RC    +C A     + H+ SRDA +I GLG++ +  
Sbjct: 409 CPECQSPLVRPVGE------AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKVVIL 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       +   +D+++L++      T+I  +   G+ S  NL  ++ + +N S  R 
Sbjct: 462 LIEQ----GLVTAISDLYSLEK------TEIAKLDRMGEKSALNLITAMAQSKNQSWSRV 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LGIR+VG+  A+ LA+ + + +  A      +A           V  +G+ IAQ++ 
Sbjct: 512 LYGLGIRYVGSVNAKILAESFRTVEELANASVTDLA----------SVYGIGEEIAQSVY 561

Query: 614 EFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++++   N   V       +  +         + +  K  V TGTL  ++R +A+E + +
Sbjct: 562 DWFRIAANRDLVAKLQAAGLQFAAAAKTTTTKATLAGKTFVITGTLPTLKREEAKELIEK 621

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  V+  +S+KTD +++G+  GSKLEKA +LG+  + E Q L L++
Sbjct: 622 AGGKVTGSVSKKTDYLVLGEAAGSKLEKALELGITQLTEAQLLELIK 668


>gi|299820617|ref|ZP_07052507.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601]
 gi|299818112|gb|EFI85346.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601]
          Length = 674

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/715 (33%), Positives = 369/715 (51%), Gaps = 51/715 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K   +L +E++ +   YY    P + D  YD   +    I  A PD       + P  +
Sbjct: 5   KKRYEALIEELNQYSYDYYVQDNPSVEDVVYDKAMQELLKIEEAHPDWITV---DSPSQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KVTH  P LSL   +  +DLR F  RI       D     +  E KIDG 
Sbjct: 62  VGGEILEGFQKVTHKTPMLSLGNAFGEDDLRDFDRRIQDRIG--DGTEYEYMCELKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ YE G++   A RGDG +GED++A +R + +IP  L   +   IEVRGE Y+ K  
Sbjct: 120 AVSLIYENGEYRQGATRGDGTTGEDITANLRTVRSIPIKLKETL--SIEVRGETYMPKKS 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN      G   +ANPRNAA+G LR+L+      R L+ F++ +    ++      E
Sbjct: 178 FQKLNGAREEEGLPLFANPRNAAAGSLRQLDTKIAAKRNLDIFLYSVADFGDMGVTKHSE 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R       +++Y  E  + RS L Y+IDG+V K+++   Q+++G
Sbjct: 238 GLDYLEKLGLKVNKERRVCKNIEEVLAYVEEWTAKRSDLAYEIDGIVVKLNDLRQQEEVG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T L DI++++GRTG++TP A L+PV++ G  ++ A+LHNE
Sbjct: 298 YTVKSPRWAIAYKFPAEEVPTVLRDIELRVGRTGVITPTAILDPVHVAGTTVSRASLHNE 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK            +DIR+ D V++K+AG++IP+V+  +  +R    + F  P  CP 
Sbjct: 358 DLIK-----------QKDIRIKDTVMIKKAGDIIPEVIRSLPEKRTGSEEEFHMPVHCPE 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR A NI+GLG++ +   F 
Sbjct: 407 CGSELVRLEGE------VALRCINP-KCPAQLKEGLIHFVSRSAMNIDGLGEKVVRQLFT 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I   AD++ L + +     ++      G+ SVTNL  +I K +  SLER +F 
Sbjct: 460 HE----LIHDVADLYFLSKEELLQLERM------GEKSVTNLLAAIEKSKQNSLERLLFG 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ ARSLA ++ +  N  +               LI +  +G+I+A +IV ++
Sbjct: 510 LGIRHVGAKAARSLAIHFETMDNVKEA----------SLEDLIAINDIGEIMADSIVTYF 559

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +N      ++ L +                        KK+V TG L++++R +A+  + 
Sbjct: 560 ENEEVHSLLQELERAGVNMTYTGPRLEEVPEEDLVFAGKKVVLTGKLEQLKRDEAKALIE 619

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            LG  VS  +S+ TDI++ G + GSKLEKA++L + I +E   L  L      ++
Sbjct: 620 SLGGSVSGSVSKNTDIVVAGSDAGSKLEKAEELSIPIWSENDLLEYLPDEGGLIK 674


>gi|329912476|ref|ZP_08275756.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545605|gb|EGF30768.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
          Length = 679

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/696 (37%), Positives = 383/696 (55%), Gaps = 47/696 (6%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
             H   YY    P+I D++YD L R  +A+  + P+L  +   + P  ++G        +
Sbjct: 21  DRHAHAYYVLDNPVIPDADYDLLFRELEALEASHPELVTA---DSPTRRVGAPPLPEFVQ 77

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V HS+P LSL   +  ED+  F  R+    Q      + +  E K DG  I +RYE G  
Sbjct: 78  VRHSVPMLSLSNGFADEDVIGFDRRVRDGLQIA--GEVAYATELKYDGLAINLRYENGVL 135

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GE+V+  IR I  IP  L  +  P II+VRGEV + K DF +LN    A
Sbjct: 136 VEAATRGDGSTGENVTVNIRTIRGIPLRLHTDTPPAIIDVRGEVLLYKADFASLNARQRA 195

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLG 265
            G K +ANPRNAA+G LR+L+      R L FF +G+G    +        +L   R LG
Sbjct: 196 AGLKEFANPRNAAAGSLRQLDSRITAQRALRFFAYGIGTLEGVAMPDSHSGLLDWYRALG 255

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            PV +  +  +   G++ +Y E+ + R++LPY+IDG+VYKVD+   Q+QLG  AR+PR+ 
Sbjct: 256 IPVCDERKVVHGAAGLLDFYREIGAKRASLPYEIDGVVYKVDDAVQQQQLGFVARAPRYA 315

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           ++HKF  ++AST +  ID+Q+GRTG +TPVARL PV +GG ++TNATLHNED ++     
Sbjct: 316 LAHKFPAEEASTVVQGIDVQVGRTGAITPVARLAPVAVGGVIVTNATLHNEDEVRR---- 371

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  +DIR+GD V+V+RAG+VIP+VV  I + R PD Q F  PS CP+C S +VR  
Sbjct: 372 -------KDIRIGDTVIVRRAGDVIPEVVAFIADLRGPDVQEFVMPSACPVCGSAIVRLE 424

Query: 446 NPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
           +       A  RC+GG + C+AQ+   L HFVSR A +IEGLG+Q +      E     I
Sbjct: 425 DE------AIARCSGGWIKCAAQRKGGLLHFVSRRAMDIEGLGEQLVVQLVDRE----VI 474

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           R PAD++ L          +  +    D S  N+  ++ K ++ +L RFI++LGIRHVG 
Sbjct: 475 RTPADLYKL------GLVGLSELARMADKSARNVLAALEKSKSTTLARFIYALGIRHVGE 528

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A+ LA ++                       L+ V  VG ++A +I+EF+ +P N+  
Sbjct: 529 ATAKELAAHFGQLDIVLAATEE----------QLLEVADVGPVVACSILEFFADPLNVEL 578

Query: 625 VEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           VE      V  +     + VS     K  V TGTL  + R +A   +   G  V+  +S+
Sbjct: 579 VEQLRAAGVHWTEHAGRQVVSLPQSGKTFVLTGTLPTLGRDEAAALIEAAGGKVAGSVSK 638

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KT  ++ G + GSKL KAQ+LG+ I++E   L LL+
Sbjct: 639 KTSYVVAGSDAGSKLAKAQELGLAILDEAGLLQLLK 674


>gi|304321380|ref|YP_003855023.1| NAD-dependent DNA ligase [Parvularcula bermudensis HTCC2503]
 gi|303300282|gb|ADM09881.1| NAD-dependent DNA ligase [Parvularcula bermudensis HTCC2503]
          Length = 727

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/741 (38%), Positives = 421/741 (56%), Gaps = 43/741 (5%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E LS  +A  EL+ L  E++  D  Y     P++ D+ YDAL+RR +AI   FP L R+ 
Sbjct: 8   EELSEAEAADELARLAHEMAAADIAYENAD-PVMTDAAYDALRRRNEAIEARFPHLRRA- 65

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++G   +    KV H++P LSL+  +  ED+ +F+TR+ RF +  ++  +  T
Sbjct: 66  --DSPSLRVGTAPSGRFAKVRHALPMLSLDNAFADEDVDEFVTRVRRFLRLGEEEPLRLT 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            EPKIDG    +RYE+GKFV    RGDG  GED++  +  I  IP  L    P I+EVRG
Sbjct: 124 AEPKIDGLSANLRYEEGKFVLGTTRGDGTVGEDITRNLATIENIPARL-EGAPSILEVRG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY+ K  F A+ND   A G K +ANPRNAA+G LR+ +P+    R L FF +  G+ S 
Sbjct: 183 EVYLGKEAFAAMNDAFAARGEKVFANPRNAAAGSLRQKDPSITADRPLRFFAYAWGEVSS 242

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q E ++++  LGF  N  +    T    +++Y  ++++R+ L YD+DG+VYKVD 
Sbjct: 243 PLGETQTEAVKRLSDLGFCTNELMGTFATAKEAIAHYRHIETLRAALDYDVDGVVYKVDR 302

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++LG  +RSPRW I+HKF+ ++A T L  IDIQ+GRTG LTP ARL PV +GG ++
Sbjct: 303 LDWQERLGAVSRSPRWAIAHKFSAEKAETVLERIDIQVGRTGALTPTARLRPVTVGGVVV 362

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHNED I  L           D+R GD V V+RAG+VIP+++ ++  +R  +AQP+
Sbjct: 363 SNATLHNEDEIARL-----------DVREGDSVCVQRAGDVIPQILSVLTEKRPKEAQPY 411

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S  VR+LN KTG+     RCTGGL C AQ +ERLKHFVSR A +I+GLG 
Sbjct: 412 RFPTHCPVCGSEAVRELNEKTGERDVVRRCTGGLICPAQGIERLKHFVSRKAMDIDGLGA 471

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK---------------------IENI 527
           +Q++ F+        I  PADIFTL  R    T                           
Sbjct: 472 RQIEDFYGRHM----IAEPADIFTLPARYHQGTFDVIGTSDLNSYKRLAPTATKPARWTK 527

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                 S+ NL+ +I   R+  L R IF+LGIRH+G    R +A+   +   F +  + +
Sbjct: 528 EITNRKSLDNLFAAIEAARSRPLGRVIFALGIRHIGEMNGRLIAQGVETLSGFCRLGDRL 587

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
              +      ++ +  +GD +  A+  F+  PRN  A++ L  E+SP+         S  
Sbjct: 588 AKGDEAARQEMLAIDGIGDTVTDALAAFFHEPRNREALDRLAAEISPAAPPKPAQ-DSRF 646

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +VFTG L+++ R +A+   T LGA VS  +S KTD ++ G   GSKL KA+ LGV 
Sbjct: 647 SGKTVVFTGKLERMSRDEAKARATSLGAKVSGSISAKTDYLVAGPGAGSKLTKAKDLGVD 706

Query: 708 IMNEEQFLFLLQQYNTTLRIH 728
           I+ E+++L  +     ++++ 
Sbjct: 707 ILTEDEWLEFISDEAVSVQLE 727


>gi|254514186|ref|ZP_05126247.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
 gi|219676429|gb|EED32794.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
          Length = 675

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 382/712 (53%), Gaps = 46/712 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +  + +L +++   +  YY   +P + D +YDA  R    +    P+L   +DP+ P 
Sbjct: 6   DIKARVVALREQLERWNHQYYVLDEPTVPDQDYDAALRELQKLETEHPEL---QDPSSPT 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G     +   V H +P LSL+  ++ E+L  F+ R+      +    +    EPK+D
Sbjct: 63  QRVGAAPLSAFESVAHPMPMLSLDNAFSDEELGAFLQRVMDRLDVESLPEL--VAEPKLD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYIS 194
           G  +++ Y  G    AA RGDG  GED++  +R I ++P  L  +  P+++E+RGE+++ 
Sbjct: 121 GIAVSLIYRDGVLARAATRGDGTHGEDITLNVRTIGSVPLRLGGDACPDVVEIRGEIFMP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEI-FAK 252
           +  F A N+     G KP+ NPRNAA+G LR+L+     R  L F  +  G+  E  + K
Sbjct: 181 RAGFEAFNEYARRNGEKPFVNPRNAAAGSLRQLDSQITARRPLEFCAYASGQHPESQWPK 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +E+LQ     G P++    + ++    V YY  +   R +L +DIDG+VYKV++F  Q
Sbjct: 241 SHWEVLQLFASWGVPISRYAERLSSLEECVDYYQRLGDQRDSLSFDIDGIVYKVNDFEAQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  AR+PRW I+ KF  ++A T++  ++ Q+GRTG +TPVARLEPV +GG  ++NAT
Sbjct: 301 SKLGFVARAPRWSIARKFPAQEAVTKVTGVEFQVGRTGAITPVARLEPVFVGGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +  L+           +  GD V+V+RAG+VIP+VV +I   R PDA   + PS
Sbjct: 361 LHNMDEVGRLE-----------LHDGDTVVVRRAGDVIPQVVSVIEERRLPDAALIAAPS 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S V R          A  RC+GGL C AQ    ++HF SR A +I+GLG++ ++
Sbjct: 410 ACPVCASAVQRVAGE------ATLRCSGGLVCPAQLKAAVRHFASRRAMDIDGLGEKLVE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               +      +R  AD+F L++R   +  ++      G+ S T L  +I   R  +L R
Sbjct: 464 QMVDT----GLVRDVADLFRLEQRSLLTLERM------GEKSATKLLAAIESSRRTTLAR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A +LA Y+ S +          A    D  SL+ VP VG ++AQ +
Sbjct: 514 FIFALGIREVGEATALALATYFGSIE----------AIRAADLDSLLEVPDVGPVVAQHL 563

Query: 613 VEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F+    N   +E  L   V        +N    +E +  V +G L+   R +A+E + 
Sbjct: 564 RAFFSAQANQQVLERLLAAGVVWPAVSPAQNAQGPLEGQTWVVSGKLESQSRDEAEEALR 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            LGA  S  +S KT +++ G   GSKL KA+ LGV+I++E++FL  L +   
Sbjct: 624 ALGARTSKSVSGKTSVLLAGPGAGSKLAKAESLGVEIVDEQEFLARLAKAGA 675


>gi|116748867|ref|YP_845554.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB]
 gi|116697931|gb|ABK17119.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB]
          Length = 694

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/712 (37%), Positives = 385/712 (54%), Gaps = 51/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A   + +L +EI +H+  YY   +P I D  YD L R    +  ++P L     P+ P
Sbjct: 24  EKAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALI---TPDSP 80

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G           H+IP LSLE   +  ++ +F  R+ +     D   + F  EPK+
Sbjct: 81  TQRVGAAPAEKFLPFPHTIPMLSLENAMSEAEVFEFARRVRKILG--DRGDVDFMAEPKM 138

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----SLNIPEIIEVRG 189
           DG  + + YE G+   A  RGDG+ GEDV+   + I  IP  L       + P  I VRG
Sbjct: 139 DGLAVELVYENGELTGAGTRGDGYVGEDVTRNAKTIRAIPLKLYAGAGGASPPARIAVRG 198

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+ + DF ALN      G   +ANPRNAA+G LR+L+P+    R L  F +G+G+ S 
Sbjct: 199 EVYMDRKDFAALNRSREQAGEPLFANPRNAAAGSLRQLDPSVTAARSLKAFFYGVGEVSG 258

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q + L+++R  G PVN   R   +    VS+YNE+ + R  LP++IDG+V KV+ 
Sbjct: 259 YRFKTQAQTLEQLRRWGLPVNPLSRVCPSIEDAVSFYNEIAAGRDALPFEIDGVVVKVNS 318

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+ LGE++RSPRW I++KF+  QA TR+LDI +Q+GRTG+LTPVA LEPV +GG  +
Sbjct: 319 IEWQEMLGEKSRSPRWAIAYKFSPHQARTRVLDIKVQVGRTGVLTPVAELEPVTVGGVTV 378

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN+D ++            +DIRV D+V+V+RAG+VIP+VV++I   R    + F
Sbjct: 379 RRATLHNQDEVER-----------KDIRVRDQVMVRRAGDVIPEVVEVIGEARTGGEEVF 427

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C S VVR          A HRC     C AQ    L+HF SRDA NIEGLGK
Sbjct: 428 QMPGQCPSCGSEVVRLPEE------AVHRCLN-RNCPAQIKASLRHFASRDAMNIEGLGK 480

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +            +   +D++ L      S   +E + GF   S  NL +SI + +  
Sbjct: 481 NIVSMLVDR----GIVESVSDLYRL------SVETLEQLPGFAGKSSRNLVESIERSKKT 530

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L  F+++LGI HVG+ +AR LA+ + +     +               L+ V  VG+++
Sbjct: 531 NLADFLYALGIYHVGSHVARLLAERFGTLDAVRRA----------SVEELMSVNGVGEVV 580

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKA 666
           A+++V ++  P N   VE+LL           +   V +    K +VFTG L  + R  A
Sbjct: 581 ARSVVHYFSLPANRTLVESLLSAGLEMAATEPEAGPVDAFWNGKTVVFTGALSSMTRSNA 640

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
                  GA VS  +SRKTDI++ G +PGSK+EKA+QLG+ I++E +FL  L
Sbjct: 641 AALTASRGARVSDSVSRKTDIVVAGADPGSKVEKARQLGITILDEREFLERL 692


>gi|227530245|ref|ZP_03960294.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540]
 gi|227349834|gb|EEJ40125.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540]
          Length = 680

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/721 (33%), Positives = 389/721 (53%), Gaps = 49/721 (6%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q IP+  L+++QA++E+  L ++I+     YY+   P + D  YD   +R   I   FP+
Sbjct: 4   QSIPVAQLTLDQAKEEIGPLRKQIAQWGKEYYEQDSPTVEDYVYDRQYQRLVQIEQRFPE 63

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L   + P+ P  ++GGE    L KV H IP LS+  +++IE+L  F  R      +  D 
Sbjct: 64  L---QTPDSPTQQVGGEAESQLTKVRHEIPMLSMGDVFSIEELMDFNHRQQE--NRDVDV 118

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
              + LE KIDG  +++ YE GK +  + RG+G+ GEDV+  +R I ++P+ L    P  
Sbjct: 119 EAEYNLELKIDGLSLSLVYENGKLIQGSTRGNGNIGEDVTENVRTIKSVPQELPE--PLS 176

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E RGE Y+ K  F  LN +    G+  +ANPRNAA+G LR+L+P     R L+ F++ +
Sbjct: 177 VEFRGECYMPKESFAKLNAQREDDGQPIFANPRNAAAGSLRQLDPKVTAKRDLDTFMYYV 236

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            +  ++    Q E L +MR LGF VN   R  +    I  Y NE  + R  L Y IDG+V
Sbjct: 237 PEYQKLGVTTQAEALDRMRELGFKVNPHNRVVHNRQEIEDYINEYTAKRDQLAYGIDGIV 296

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++   ++ LG   + PRW I++KF  ++  T + DI+  +GRTG +TP A ++PV +
Sbjct: 297 EKVNDLETEEALGNTVKVPRWEIAYKFPPEEQPTIIRDIEWTVGRTGNVTPTAVMDPVQL 356

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A+LHN DY+K            +D+R+GD V + +AG++IP++  + +++R  
Sbjct: 357 AGTTVSRASLHNPDYLK-----------EKDVRLGDTVYLHKAGDIIPEISKVNLSKRPA 405

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D++P+  P+ CP C S +V   +        A RC   + C AQ  E L HF SR+A +I
Sbjct: 406 DSEPYQIPTKCPACDSELVHLDDE------VALRCINPM-CPAQIKEGLAHFASRNAMDI 458

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GLG + ++  +  +     I   A ++ L   Q  +  K      FG+ S TNL  SIN
Sbjct: 459 AGLGPKIIEQLWNKK----LIHDVAGLYALTEDQLLTLDK------FGEKSATNLLTSIN 508

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             RN S+ER +F LGIRHVGA+ AR +  ++           + I+           V  
Sbjct: 509 NSRNNSVERLLFGLGIRHVGAKAARLIMAHFNDLDQLMGASADEISA----------VDG 558

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQK 660
           +G  I +++  ++ N +    +E L +              + SS+   K++V TG L +
Sbjct: 559 IGPTIGESVETYFANEQVQSLIEELRQSGLNFTYLGSTTTVDESSDWNGKRVVLTGKLVE 618

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R +A++++   GA V+  +S+KTDI+I G+  GSKL KAQ+LGV + +E++F   +++
Sbjct: 619 MTRTEAKDWLEVHGAKVTGSVSKKTDIVIAGEKAGSKLTKAQELGVDVWDEQRFSQAMKE 678

Query: 721 Y 721
            
Sbjct: 679 E 679


>gi|319793880|ref|YP_004155520.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
 gi|315596343|gb|ADU37409.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
          Length = 694

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/718 (34%), Positives = 374/718 (52%), Gaps = 60/718 (8%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +++  H   YY    P + D+EYD L +R  A+   FP+L     P+ P  ++GG++ 
Sbjct: 14  LSEQLHKHAHLYYVLDAPELPDAEYDKLFQRLQALETEFPEL---RTPDSPTQRVGGKVL 70

Query: 84  LSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKKDDNS-IFFTLEPKIDGTMIT 140
               KV H +P LS+    +        F  R+ +     +D   + +  E K DG  + 
Sbjct: 71  DGFTKVRHKVPMLSIRTETDITPGGASAFDARVRKELGLAEDGPQVSYVCELKFDGLAMN 130

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           +RYE G  V AA RGDG  GEDV+  IR +  IP  LS   P ++EVRGEVY+ + DF A
Sbjct: 131 LRYEDGVLVQAATRGDGEVGEDVTQNIRTVREIPLRLSGKAPPVVEVRGEVYMKRADFDA 190

Query: 201 LNDEMIAV------GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-----SE 248
           LN+             K + NPRNAA+G +R+L+P     R L+FF +GLG+        
Sbjct: 191 LNERQREKIAAGQKNEKIFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGLGEVTPAAEGG 250

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ LQ+    GFPV     +A     +++++  +   R  LPYDIDG+VYKVD 
Sbjct: 251 PDCPTQFDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYDIDGVVYKVDS 310

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ+QLG  +R PRW ++HK+  ++  T +L I+IQ+GRTG LTPVA+L PV +GG  +
Sbjct: 311 IELQRQLGFVSREPRWAVAHKYPAQEQLTDVLGIEIQVGRTGKLTPVAKLAPVFVGGVTV 370

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP- 427
           TNATLHNED  +            +D+RVGD V+V+RAG+VIP+VV ++           
Sbjct: 371 TNATLHNEDEARR-----------KDVRVGDTVIVRRAGDVIPEVVGVVPESLAKPEGER 419

Query: 428 ---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              F+ P  CP+C S  VR+           +RCTGGL C+AQ+ E + HF +R A +++
Sbjct: 420 GPVFTMPHKCPVCGSEAVREEEE------VDYRCTGGLFCAAQRKEAILHFAARRAVDVD 473

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + ++    +      IR   D++ L         ++       + S  NL D++  
Sbjct: 474 GLGDRLVEQLVDAN----LIRTLPDLYKLGFTTLAGLDRMA------EKSAKNLVDALEA 523

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+F LGIRHVG   A+ LAK++                       L+ V  V
Sbjct: 524 SKKTTLPRFLFGLGIRHVGESTAKDLAKHFGKLDAIMDATE----------QQLLEVNDV 573

Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G ++AQ++  F+  P N   VE L    ++   G         +     V TGTL  + R
Sbjct: 574 GPVVAQSLRTFFDQPHNREVVEQLRACGLTWEEGEPAARAPKPLAGLTFVITGTLPTLGR 633

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            +A++ +   GA V+  +S+KT  ++ G+  GSKL+KA+++GV +++E + L +L+  
Sbjct: 634 DEAKDKLEAAGAKVAGSVSKKTHYLVAGEEAGSKLDKAREIGVAVIDEARMLEILENG 691


>gi|108803178|ref|YP_643115.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941]
 gi|122976160|sp|Q1AZ75|DNLJ_RUBXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|108764421|gb|ABG03303.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941]
          Length = 685

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/715 (34%), Positives = 378/715 (52%), Gaps = 45/715 (6%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           ++IP  A  + +AR+ +  L ++I YH+  YY    P I D+EYDAL R  + +   FP+
Sbjct: 8   RIIPPVAEKLAEARQRVEELREQIRYHNRKYYVEDAPEISDAEYDALYRELEELESRFPE 67

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L     P+ P  ++GGE      +V H++P LSL+    +E+LR++  R+ R    +++ 
Sbjct: 68  LV---TPDSPTQRVGGEPLEEFEEVRHAVPMLSLQNARRVEELREWDARVRRLLGPEEEG 124

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + +  E KIDG  +++RYE G+ V  A RG+G  GEDV+  +R I ++P  L  + P +
Sbjct: 125 RLRYVTELKIDGLAVSLRYENGRLVRGATRGNGFVGEDVTRQLRTIRSVPDRLDDDPPGV 184

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +E RGEVYI   DF   N      G +P+ANPRN A+G +R+L+P     R L  +++G+
Sbjct: 185 LEPRGEVYIKLKDFEEFNRRRQERGERPFANPRNLAAGSVRQLDPRVTARRPLTIYLYGV 244

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+  E F +   E L  +R  G  VN           ++         R  L + +DG+V
Sbjct: 245 GEGYENF-ESHSEALAALRRYGLRVNPHT-VHGDIDSVIEECGRWAKKREALDFQVDGVV 302

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD    Q++LG   ++PRW I++KF      TRL DI + +GRTG LTP A LEPVN+
Sbjct: 303 VKVDSREQQERLGAVQKAPRWAIAYKFEPLAGRTRLRDIVVTVGRTGALTPQAVLEPVNV 362

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  I+ ATLHNEDYIK            + I +GD V+V+RAG+VIP+VV  +  ER  
Sbjct: 363 GGVTISRATLHNEDYIK-----------EKGILIGDTVIVERAGDVIPQVVRPVPEERDG 411

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D + F  P  CP+C  RV R          A  RC   + C AQ LE + H+ SR A +I
Sbjct: 412 DEEEFRMPERCPVCGERVSRPEGE------AITRCAN-VRCPAQALEHIIHWASRGAMDI 464

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++     F        IR  AD++ L+  Q           G G+ S  NL  +I 
Sbjct: 465 EGLGEKLARKLFD----LGLIRDVADLYELRAEQLAPLE------GLGEKSAQNLIRAIE 514

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + +    +R +F LGIRHVG+  A  +A+ +   +                   L ++  
Sbjct: 515 RSKERPFDRVLFGLGIRHVGSATAELIAERFSGEELLR----------GVGVEELTQIEG 564

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG+I+A+A+VE++    N   V  L++          K     +  ++LV TGTL +  R
Sbjct: 565 VGEIVARAVVEYFSLEENRKLVRRLMEHGLNFGPVRGKPEEGPLSGRRLVITGTLSRP-R 623

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  + +   G  V++ +SR TD ++ G+NPGSKLE+A++LGV +++EE    LL
Sbjct: 624 SEISDLIEGAGGTVTSSVSRNTDYLVAGENPGSKLERARELGVPVLDEEGLRRLL 678


>gi|237745525|ref|ZP_04576005.1| DNA ligase [Oxalobacter formigenes HOxBLS]
 gi|229376876|gb|EEO26967.1| DNA ligase [Oxalobacter formigenes HOxBLS]
          Length = 685

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/713 (36%), Positives = 397/713 (55%), Gaps = 49/713 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
               + L  EI  ++  YY    P++ D+EYD + R    +  A+P+L     P  P  +
Sbjct: 16  ESRAAKLRSEIERYNYAYYVLDAPVVPDAEYDRVFRELQELEAAYPELVV---PGSPTQR 72

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG       KV H +P LSL+     E++  F  R+           + +  E K DG 
Sbjct: 73  VGGAPLAQFDKVEHRLPMLSLQNGLTDEEVEAFDRRLGEELG---IAQVEYEAELKFDGL 129

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKN 196
            +++RYEKG  V AA RGDG SGE+++A IR I ++P  LS L  PE++EVRGEV + K 
Sbjct: 130 AVSLRYEKGVLVQAATRGDGMSGENITANIRTIRSVPLHLSELAPPEVLEVRGEVLMFKK 189

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQ 254
           DF  LN      G+K + NPRNAA+G LR+L+     +R L FF +G+G+       + Q
Sbjct: 190 DFQDLNRRQRESGQKEFVNPRNAAAGSLRQLDSQITASRQLKFFAYGIGELDGAPLPETQ 249

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L     LG PV    +    F G++ ++  +++ R  LPY+IDG+VYKV+  S Q++
Sbjct: 250 NRLLNWFVQLGIPVCEERKVVRGFKGLMGFFQAIEARRDALPYEIDGVVYKVNRLSEQQK 309

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ ++HKF  ++  T + DI++Q+GRTG +TPVARL+PV +GG  +TNATLH
Sbjct: 310 LGFISRAPRFALAHKFPAQEVLTEVTDINVQVGRTGAITPVARLKPVFVGGVTVTNATLH 369

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +D+R+GD V+V+RAG+VIP+V+  +  +R  DA+ F  P+ C
Sbjct: 370 NEDEVRR-----------KDVRIGDTVIVRRAGDVIPEVIASVPEKRPADAREFVMPALC 418

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           P+C S +VR  +       A  RC+GG + C+AQ+   L+ F SR A NIEGLG+Q +D 
Sbjct: 419 PVCGSPIVRPEDE------AIARCSGGWIKCAAQKKGGLQLFASRKAMNIEGLGEQLIDQ 472

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               +     I   AD++ L          +  +    D S +NL D + + R  +L RF
Sbjct: 473 LVDRQI----INDAADLYRL------DLETLSGLDRMADKSASNLLDELGRSRETTLSRF 522

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIRHVG   ARSLA+++ + Q+                  L+ V  +G ++A +I 
Sbjct: 523 LYALGIRHVGETTARSLAEHFGNLQDLMNATEE----------QLLEVDDIGPVVALSIR 572

Query: 614 EFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +F+ + RN   +  L  +    P     EK  +  ++++K V TGTL  + R  A E + 
Sbjct: 573 QFFDDVRNRELIGKLQNDGVHWPERAMKEKPPALPLQDRKFVLTGTLSSLTREAAAEIIR 632

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            LG  VS  +S+KTD ++ G  PGSKL KAQ+LG++I++EE F+ L++     
Sbjct: 633 NLGGKVSNSVSKKTDYVLAGSEPGSKLAKAQELGIRILDEEAFVQLVKHDKDN 685


>gi|312127350|ref|YP_003992224.1| DNA ligase, nad-dependent [Caldicellulosiruptor hydrothermalis 108]
 gi|311777369|gb|ADQ06855.1| DNA ligase, NAD-dependent [Caldicellulosiruptor hydrothermalis 108]
          Length = 673

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/704 (34%), Positives = 386/704 (54%), Gaps = 49/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+       + +   + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLKLKEDI--SIVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  +    +   +   
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKEL-ETHA 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   
Sbjct: 236 QALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVA 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           GE A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN
Sbjct: 296 GETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP
Sbjct: 356 MDYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C + V++  +        A+RCTG + C A+    + HFVSRDA +I G+G+  +   F
Sbjct: 405 VCGADVIKFEDE------VAYRCTG-VECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLF 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+ PADI+ L+     +  +      FG  S  NL  +I   +N  L+R I+
Sbjct: 458 ER----GLIKTPADIYYLKFEDLVNLER------FGVKSTNNLLKAIQASKNRPLDRLIY 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIRH+G + A++LA++  S  +                  L+ +P  G+ +A+++V F
Sbjct: 508 ALGIRHIGQKAAKTLAEHISSIDDLFTITEE----------QLLSLPDFGEKMAKSVVTF 557

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++  +    +E L      ++   +   S  ++    V TGTL K  R++A+E +  LGA
Sbjct: 558 FRQDQTRHLIERLKAAGVNTVSEKKAK-SDILKGYTFVLTGTLSKYSRNEAKEILESLGA 616

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V+  +S+KT  ++VG +PGSK  KAQQLG+KI+NEE F  L++
Sbjct: 617 KVTESVSKKTTAVVVGQDPGSKFTKAQQLGIKILNEEDFEKLVK 660


>gi|262369277|ref|ZP_06062605.1| DNA ligase [Acinetobacter johnsonii SH046]
 gi|262315345|gb|EEY96384.1| DNA ligase [Acinetobacter johnsonii SH046]
          Length = 679

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/709 (35%), Positives = 381/709 (53%), Gaps = 47/709 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            ++  L Q ++ H+  YY   +P I DSEYD L  +  A+   +P+  +   P+ P+NK+
Sbjct: 9   AQMRQLIQILAQHNHAYYVMDQPTIADSEYDQLFHQLKALEEQYPEYIQ---PDSPINKV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG+       VTH +P LSL  ++N E+L  F  R         + +I + +E K DG  
Sbjct: 66  GGKPLAKFTSVTHVVPMLSLGNVFNQEELFAFARRAEERLP---NQTIQYDVELKFDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVYISK 195
           I++ YE+G  V    RGDG +GED++  ++ I  +P+VLS +   +P ++EVRGEV + K
Sbjct: 123 ISLWYEQGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSTDQGEVPTLLEVRGEVLMPK 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK-G 253
             F  LN E  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +      +  
Sbjct: 183 AGFEKLNAENEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPNHGQST 242

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L+ ++  GF V       ++   + + Y ++ + R  L  +IDG+V KV+    Q+
Sbjct: 243 MSESLEWLQQFGFAVGERHFVCDSIQEVQAVYEQINAERPQLSVEIDGMVIKVNSLKQQQ 302

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +R PRW  ++KF    A T + +ID Q+GRTG LTPVARL PV +GG  ++N TL
Sbjct: 303 QLGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNVTL 362

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   I  L           D+R+GD V V R+G+VIPKV  +    R  DA     PS 
Sbjct: 363 HNIGEIHRL-----------DVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDATEVELPSQ 411

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C+S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++ 
Sbjct: 412 CPVCESPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVES 465

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     ++  ADI+ L   +     K+  I   G+ SV NL DSI   +  +L  F
Sbjct: 466 LL----HLDLLKDVADIYHLHEHR----EKLLTIEKMGEKSVQNLIDSIENSKKTTLAAF 517

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGIR VG   AR LA  + +            A    D  +L + P VGDI A+ IV
Sbjct: 518 IYALGIRGVGETTARMLANTFQTLD----------ALRVADIDALKKTPDVGDITAEWIV 567

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +F+Q P N+  ++ L                  +  +  V TGTL  + R +A + +  L
Sbjct: 568 DFFQAPHNLEVLDRL-LAAGIHWDAPVAPSRQPLNGESWVVTGTLSTMGRDEATQLLQAL 626

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           GA VS  +S KT  ++ G+  GSKL+KA++LG+ ++NE +F+ L++ Y 
Sbjct: 627 GARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIAVINEAEFIQLMKDYG 675


>gi|219667570|ref|YP_002458005.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2]
 gi|254781313|sp|B8FP44|DNLJ_DESHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219537830|gb|ACL19569.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2]
          Length = 659

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/706 (33%), Positives = 367/706 (51%), Gaps = 49/706 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + + +L ++I   +  YY   +P + D+EYDAL +    +    P+      P+ 
Sbjct: 1   MSDVSQRIEALREQIEEANYQYYGLDQPTLSDAEYDALLQELIRLEKEHPEFL---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KV H+   LSL+  ++  DL +F  R+           + + +E K
Sbjct: 58  PSQRVGGYIAKEFPKVRHAEALLSLDNAFDAGDLLEFDRRVRSM-----VAEVEYVVELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + + YE G  V  A RGDG  GE+++A ++ IP IP  L     + ++VRGE Y+
Sbjct: 113 IDGLTVALTYEDGALVRGATRGDGEVGEEITANLKTIPAIPLRLR-KQADRLDVRGEGYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  FL LN E    G+  +ANPRNAA+G LR+L+      R L +F + +    E    
Sbjct: 172 PKGSFLRLNQEREEAGQPLFANPRNAAAGSLRQLDSRITAQRKLGYFAYQVLTPEEGELA 231

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q  +L  ++  GF VN   R  +    +++Y  EM   R   PYDIDGLV KV++ + Q
Sbjct: 232 SQTAVLDYLKEQGFSVNPEYRVFSAIEEVIAYCGEMVEKRHNYPYDIDGLVIKVNDIAQQ 291

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  A+SPRW I++KF  +Q  T + DI I++GRTG+LTP A L PV + G+ +  AT
Sbjct: 292 RELGFTAKSPRWAIAYKFPAEQVETVVEDIVIRVGRTGVLTPTAYLTPVFVAGSTVGRAT 351

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+            +D+R+GD VL+++AG+VIP+VV I+  +R    + F  P 
Sbjct: 352 LHNLDNIRA-----------KDVRIGDHVLIQKAGDVIPEVVKILPEKRTGGERIFEMPE 400

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP CQS V+R+         AAHRCT  + C A+Q E + HFVSR+A NI+GLG   + 
Sbjct: 401 LCPECQSPVIREEGE------AAHRCT-SITCPARQREAIIHFVSRNAMNIDGLGPAVIY 453

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  I+  AD++ L+        +       G  S  NL  +I   +   L  
Sbjct: 454 QLLE----AGLIKDAADLYALEYDALVPLER------LGKKSAENLLKAIEDSKERGLAP 503

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF LGIRHVG +  + LA+ Y + ++  +               L  +P VG  +AQ++
Sbjct: 504 LIFGLGIRHVGEKAGKILAQKYGTMEDLEKA----------QVEELQEIPDVGPAMAQSV 553

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            +F+Q       +  L +       +H          K +V TG+LQ+  RH  +  + +
Sbjct: 554 AQFFQQESTHHFLNKLRQAGVVMSAQHSAK-PQIFAGKSIVVTGSLQRWDRHYVETMIEE 612

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G   ++ +S+KT  ++ G+  GSKL KA++LG+ +++EE+F  LL
Sbjct: 613 FGGKAASSVSKKTAFVVAGEKAGSKLAKAKELGIPVLSEEEFAELL 658


>gi|238063192|ref|ZP_04607901.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149]
 gi|237885003|gb|EEP73831.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149]
          Length = 702

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/732 (31%), Positives = 362/732 (49%), Gaps = 43/732 (5%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   Q          +AR+  ++L QE++ H   YY    P + D+E+D   R  +A+  
Sbjct: 1   MSPAQEAAAGPEPTPEARERHATLSQELTEHQYRYYVLDAPTVSDAEFDRQLRELEALEA 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L     P+ P  +IGG  +     VTH+   LSL+  +  E+L  +  R+ R    
Sbjct: 61  EFPAL---RTPDSPTQRIGGTFSTDFTPVTHAERMLSLDNAFADEELAAWAERVER---- 113

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL- 179
                + +  E K+DG  I + YEKG+ V AA RGDG +GEDV+A +R+I  +P  L+  
Sbjct: 114 DAGGPVPYLCELKVDGLAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIRDVPARLTPS 173

Query: 180 ----NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITR 234
               ++PE +EVRGE+Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R
Sbjct: 174 DEFPDVPEFVEVRGEIYFPIAGFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRITASR 233

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L   VHG+G         Q E    +R  G P ++  R      G+  +       R  
Sbjct: 234 PLRLVVHGIGARRGYTPTAQSESYAALRAWGLPTSDRWRVVPDLAGVAEFIAYYAEHRHD 293

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + ++IDG+V KVD  S+Q +LG  +R+PRW I+ K+  ++ +T+LLDID+ +GRTG +TP
Sbjct: 294 VEHEIDGVVVKVDPVSIQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIDVNVGRTGRVTP 353

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A LEPV + G+ +  ATLHN   ++            + + +GD V++++AG+VIP+V+
Sbjct: 354 FAILEPVLVAGSTVALATLHNAHEVER-----------KGVLIGDTVVIRKAGDVIPEVL 402

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +V+ R  DA+PF  P+ CP C + +         +     RC    +C AQ  ER+ H
Sbjct: 403 GPVVDLRPADARPFVMPTTCPACGTPL-----RPEKEADVDIRCPNSRSCPAQLRERVFH 457

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
              R AF+IE LG +       ++     I    D+F+L   +   +    N  G    +
Sbjct: 458 LAGRGAFDIEVLGYKGAAALLDAQ----VITDEGDLFSLDAERLAQSPFFVNKDGSLGSN 513

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L D++   R   L R +  L IRHVG   A++LA+++ S     +     ++     
Sbjct: 514 AAKLLDNLAVARERDLWRVLVGLSIRHVGPTAAQALARHFRSMAAIQEASEEELS----- 568

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
                 V  VG  IA +IV+++    +   V    +                +E   +V 
Sbjct: 569 -----SVDGVGPTIAASIVDWFTVDWHREVVRKWAEAGVRMAEEAGDEGPRPLEGLTVVV 623

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL    R +A E +   G  V+  +S+KT  ++VGDNPGSK +KA  L V +++EE F
Sbjct: 624 TGTLSGFSRDQAAEAIQTRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKVPVLDEEGF 683

Query: 715 LFLLQQYNTTLR 726
             LL Q     R
Sbjct: 684 RVLLDQGPDAAR 695


>gi|312135376|ref|YP_004002714.1| DNA ligase, nad-dependent [Caldicellulosiruptor owensensis OL]
 gi|311775427|gb|ADQ04914.1| DNA ligase, NAD-dependent [Caldicellulosiruptor owensensis OL]
          Length = 673

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/704 (35%), Positives = 389/704 (55%), Gaps = 49/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVL---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+       D +   + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSDFD---YVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLRLKEDI--SIVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  +    E   +   
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWC-EKEIETHA 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ MR LGF V+           +     +++  R +LP++IDG V K+++  L+   
Sbjct: 236 EALEYMRKLGFKVSPDYVVCKDIKEVYEVIRKIEEKRDSLPFEIDGAVVKLNQLRLRDVA 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           GE A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN
Sbjct: 296 GETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP
Sbjct: 356 MDYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C + V++  +        A+RCTG + C A+    + HFVSRDA +I G+G+  +   F
Sbjct: 405 VCGADVIKFEDE------VAYRCTG-VECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLF 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+ PADI+ L+     +  +      FG  S  NL  +I   +N  L+R I+
Sbjct: 458 ER----GLIKTPADIYYLKFEDLVNLER------FGVKSTNNLLKAIQASKNRPLDRLIY 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIRH+G + A++LA++  S  +                  L+ +P  G+ +A+++V F
Sbjct: 508 ALGIRHIGQKAAKTLAEHISSIDDLFTITEE----------QLLALPDFGEKMAKSVVTF 557

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++  +    +E L      ++   +   S+ +++   V TG L K  R++A+E +  LGA
Sbjct: 558 FRQEQTRHLIERLKAAGVNTVSEKKAK-SNILKDYTFVLTGALSKYSRNEAKEILESLGA 616

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 617 KVTESVSKKTTAVIVGQDPGSKYTKAQQLGVKILNEEDFEKLVK 660


>gi|258542980|ref|YP_003188413.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634058|dbj|BAI00034.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637118|dbj|BAI03087.1| DNA ligase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640170|dbj|BAI06132.1| DNA ligase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643227|dbj|BAI09182.1| DNA ligase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646282|dbj|BAI12230.1| DNA ligase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649335|dbj|BAI15276.1| DNA ligase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652321|dbj|BAI18255.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655379|dbj|BAI21306.1| DNA ligase [Acetobacter pasteurianus IFO 3283-12]
          Length = 685

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/707 (40%), Positives = 413/707 (58%), Gaps = 34/707 (4%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +QAR+EL  L  EI++H+  YY+   P I D+EYDAL+RR DAI    P+   +E  
Sbjct: 1   MTQQQAREELERLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVAQHPE---AEPE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFT 129
           N     +G   + +  K  H +P LSL+ +++ ED   FI+R  RF     D    + F 
Sbjct: 58  NSAAQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEGFISRATRFLGLDQDATEQLIFV 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            EPKIDG  I++ YEKG+FV    RGDG  GEDV+A +R +  +P  LS + P++IE+RG
Sbjct: 118 GEPKIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANLRTLKDLPLRLSGSYPDLIEIRG 177

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EV++SK  FL LN    A  ++ +ANPRNAA+G LR+L+P     R L+ F + LG  SE
Sbjct: 178 EVFLSKKHFLELNAAQEAANKRLFANPRNAAAGSLRQLDPKITAQRPLSLFAYALGFCSE 237

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             ++  +  L++++  GFPVN   RQ        +++ E+   R+ L YDIDG+VYK+D+
Sbjct: 238 KISRSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEAFFAEVSQSRAELAYDIDGVVYKIDD 297

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG   R+PRW I+ KF  +QA TRL +I+IQ+GRTG LTPVA LEPVN+GG L+
Sbjct: 298 LALQERLGFAGRAPRWAIAWKFPAEQAITRLKEIEIQVGRTGALTPVAHLEPVNVGGVLV 357

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE-RHPDAQP 427
             ATLHNED I             +D+R GD V ++RAG+VIP+V+ +  +    P   P
Sbjct: 358 MRATLHNEDEIAR-----------KDVRPGDMVFIQRAGDVIPQVLGVAPSPDGTPRQAP 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP  CP+C +  VR          A  RCTGGL C AQ +ERL HFVSR AF+IEGLG
Sbjct: 407 YHFPDHCPVCGAAAVRPEGE------AVRRCTGGLTCPAQVVERLIHFVSRQAFDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +  F         I  P DIF L          IE   G+G+ SV  L  +I  RR 
Sbjct: 461 DRSIREFHD----IGLILTPGDIFRLHEH----AADIEKRDGWGEQSVQKLLQAIESRRT 512

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           ISL RFI++LGIR +GA  AR LA++Y +Y+N+  ++       +D  L L  +  +G  
Sbjct: 513 ISLSRFIYALGIRRIGASNARLLARHYGTYENWFSQMQAAAIIGSDARLELGSITGIGTT 572

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            A+ +V F     N+  +  L   ++  I          +  K +VFTGTL  + R +A+
Sbjct: 573 TAEDLVAFVAEEHNLQTLADLHANLT--ITEETAASEGALAGKTIVFTGTLHTMTRPEAK 630

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
               ++GA VS  +S+KTD++++G+  GSK +KA +LG++ M+E ++
Sbjct: 631 ATAERMGAKVSDSVSKKTDLVVLGEKAGSKAKKAVELGLQTMDEAEW 677


>gi|254468809|ref|ZP_05082215.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
 gi|207087619|gb|EDZ64902.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
          Length = 669

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/710 (36%), Positives = 408/710 (57%), Gaps = 47/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +   K++S L+  I  HD CYY    P I D EYD+L R    I  + P+L     P+ P
Sbjct: 3   QDIIKKISYLKSVIQEHDHCYYVLDDPQISDHEYDSLLRELKNIEDSNPELI---TPDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG       ++ H+ P LSL   + I +L  F  RI       D N + F  E K 
Sbjct: 60  TQRVGGSPISEFNQIQHNKPMLSLGNAFGINELEAFNKRINDTL---DVNDVEFNAELKF 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  +TI YE G   YAA RGDG+ GEDV+  I+ I TIP  L   N P   EVRGEV +
Sbjct: 117 DGLAVTILYENGLMKYAATRGDGNVGEDVTHNIKTIKTIPLKLYGDNHPRTFEVRGEVLM 176

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFA 251
            KNDF  LN+  I++G+K +ANPRNAA+G LR+L+P     R L F+ + LG+   ++  
Sbjct: 177 DKNDFKELNEYQISLGQKTFANPRNAAAGSLRQLDPKITAKRKLKFYAYSLGQVDQDLEL 236

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               ++L+ +   G P+++  ++    + +  +Y ++   R+ LP+DIDG+VYKV+    
Sbjct: 237 TNHTDILKYIHNSGIPISSYSQRVVGINQMQHFYEDILKKRNDLPFDIDGIVYKVNSIKN 296

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  +++PRW I++KF  ++A T + DI++Q+GRTG++TPVARL+PV + G  +TNA
Sbjct: 297 QENLGYVSKAPRWAIAYKFPAEEAETVVNDINVQVGRTGVITPVARLQPVFVSGVTVTNA 356

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED +             +DIR+GD V+V+RAG+V+P++V +I  +R  +A+ F  P
Sbjct: 357 TLHNEDEM-----------LRKDIRIGDSVIVRRAGDVVPEIVRVIKEKRPSNAKVFEMP 405

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            +CPIC S+V+R          AA RCTG L C AQ  + + H+VSR A NIEGLG + +
Sbjct: 406 QYCPICNSQVIRIDGE------AAQRCTGQLKCEAQAKQAISHYVSRKAMNIEGLGAKII 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D FF+       I+  +DI+ L         +I+ + GFG+ S  NL ++I   +  +L 
Sbjct: 460 DHFFEK----GLIKNISDIYHL------DYEEIQKMEGFGERSAENLKEAIESSKKTTLA 509

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +FI++LGIR+VG   ++ + K   +  N       ++  + DD+L    +  VG ++AQ+
Sbjct: 510 KFIYALGIRNVGEATSKDIVKKLGTLDN-------VMKASIDDFLE---INDVGPVVAQS 559

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYV 670
           + +F+Q   N   +  +++       + +   +  ++  +  V TGTL+   R + +E +
Sbjct: 560 LHQFFQEDENKAIINNIVEFGVKWEDQAQNVSNDQKLNQQTFVVTGTLENFSRDEIKELI 619

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              G  VS  +S+KT  +I+GDNPGSK +KA +LGVK++NE+Q + LL +
Sbjct: 620 ENNGGKVSGSVSKKTSYVIIGDNPGSKADKAAELGVKVINEKQLMELLNE 669


>gi|260662792|ref|ZP_05863686.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN]
 gi|260552873|gb|EEX25872.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN]
          Length = 679

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/726 (34%), Positives = 393/726 (54%), Gaps = 51/726 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++   +  L+ +QA+ EL+ L +++      YY+   P + D  YD   +R   I  
Sbjct: 1   MSKQEA--VSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDL     P+ P  ++GG     L KVTH IP LS+  +++  +L  F  R       
Sbjct: 59  RFPDLVV---PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSPAELADFNRRQQDNSDV 115

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K D    + LE KIDG  +++ YE G+ V  + RG+G  GEDV+  ++ I +IP+VL   
Sbjct: 116 KVD--FDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPE- 172

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  +E RGE Y+ K  F+ LN+   A G+  +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 173 -PLSLEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTF 231

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +     +    Q + L+KMR LGF VN   R  ++   + +Y  E    R  LPY I
Sbjct: 232 MYYVPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGI 291

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++ + Q  LG   + PRW I++KF  ++ +T + DI+  +GRTG +TP A ++
Sbjct: 292 DGIVEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMD 351

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY+             +DIR+GD VL+ +AG++IP++  +I+ 
Sbjct: 352 PVQLAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIE 400

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D++P+  P+ CP C + +V   +        A RC   + C AQ  E L HF SR+
Sbjct: 401 KRPADSKPYEVPTTCPECGADLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRN 453

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +        ++  AD++ L+  Q  +  K      FG+ S++NL 
Sbjct: 454 AMNIDGLGPKIIEQLWDKGM----VKDVADLYRLEAAQLLTLPK------FGEKSISNLL 503

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R+ S ER +F LGIRHVGA++A+ LA  + S           I+          
Sbjct: 504 TAIANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKSVDALMAADAATISA--------- 554

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTG 656
            V  +G II  A+  ++QN +    +  L +                S+E   K++V TG
Sbjct: 555 -VDSIGPIIGDAVATYFQNEQVHQLIAELKEVGVNMDYLAPTTSATESAEWAGKRVVLTG 613

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L K+ R +AQE+++  GA V+  +S+KTD++I G+  GSKLEKAQ LG+++ +E++F  
Sbjct: 614 KLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFDQ 673

Query: 717 LLQQYN 722
            +++ N
Sbjct: 674 AMKEEN 679


>gi|259416760|ref|ZP_05740680.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B]
 gi|259348199|gb|EEW59976.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B]
          Length = 739

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/753 (39%), Positives = 434/753 (57%), Gaps = 59/753 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++  ARKE  +L+ +I   D  Y+Q   P + D+EYD LKRR  A+A AFP+LA     
Sbjct: 1   MNVTDARKEFEALQTKIEAADLDYHQKDAPTLSDAEYDRLKRRYLALAEAFPELAEEGT- 59

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
              +  +G        K+ H++  +SL   +  +D+  F   + R+     D  + FT E
Sbjct: 60  --RVESVGAPAASGFGKIAHAVRMMSLGNAFEDQDVEDFAAGLRRYLGLSSDAPLAFTAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYE G  V AA RGDG  GE+V+   R I  IP+ ++   P ++EVRGEV
Sbjct: 118 PKIDGLSLSLRYENGTLVQAATRGDGAVGENVTENARTIEDIPQQIT-GAPAVLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+S  DF ALN      G K +ANPRNAA+G LR+L+      R L FF +  G+ SE  
Sbjct: 177 YMSHADFEALNARHAETGGKIFANPRNAAAGSLRQLDAEITRARPLRFFAYSWGELSEPL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+ Q + +++ + LGF  N   R   T   ++++Y+ ++  R+ L YDIDG+VYKV++ +
Sbjct: 237 AETQIDAIERFKSLGFQTNPLTRCCQTIAELLTHYHSIEEQRADLGYDIDGVVYKVNDLA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+PV +GG +++N
Sbjct: 297 LQERLGFRSTTPRWAIAHKFPAELAWTRLDGIDIQVGRTGALSPVARLQPVTVGGVVVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI GLD+ G  +R G+DIRVGD V + RAG+VIPKV D+ +N R   A+ ++F
Sbjct: 357 ATLHNEDYIAGLDSKGATIRDGKDIRVGDWVQIYRAGDVIPKVADVDLNRRPDGAEVYAF 416

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S  VR+      +  A  RC+GGL C AQ +E+LKHFVSR AF+IEGLG +Q
Sbjct: 417 PTHCPRCNSPAVRE------EGDAVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQ 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F         I+ PADIF L+ R  +   +++N  G+GD S T L+ +I+ +R I  
Sbjct: 471 VEQFHSD----GWIKEPADIFELKERYGSGMQQLKNREGWGDKSATALFAAIDDKRRIEF 526

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN----NIIAHNNDD------------ 594
            R IF LGIRHVG   A+ LA ++ ++   A+  +      +AH   D            
Sbjct: 527 ARLIFGLGIRHVGEVAAKDLALHFRTWAVLAEAADLARPAALAHRAADEAELLERQVAQA 586

Query: 595 ---------------------------WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
                                      W  LI V  +G  +A ++ + + NP    A + 
Sbjct: 587 EERRARISEVRKAAIAACEVAPDAQAAWDDLISVDGLGPTVALSLSDAFANPEERAAFDR 646

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L+  +   I        S +  K +VFTGTL+K+ R +A+     LGA VS  +S+KTDI
Sbjct: 647 LIAHLEV-IEPDAPTEDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDI 705

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ G   GSK  KA +LGV+ M+E+Q+L L+ Q
Sbjct: 706 LVAGPGAGSKATKAAELGVRTMDEDQWLDLIGQ 738


>gi|260911472|ref|ZP_05918061.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634401|gb|EEX52502.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 666

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/707 (32%), Positives = 366/707 (51%), Gaps = 50/707 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L  ++ +H+  YY  + P + D E+D L R    +    P++    DPN P  ++
Sbjct: 5   KRIEELRNQLHHHNYLYYVQNSPTLSDQEFDHLMRELQDLEAKHPEV---YDPNSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +++    +V H  P LSL   +N +++  +   + +     D        E K DG  
Sbjct: 62  GSDLSTGFTQVRHRYPMLSLANTYNEQEVASWYENVRKDL---DGQPFEVCCELKYDGLS 118

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197
           I++ YE+G+ V A  RGDG  G+DV+A +R I  IP VL     P+  E+RGE+ +    
Sbjct: 119 ISLTYEQGRLVRAVTRGDGEQGDDVTANVRTIRAIPLVLPGTGYPDEFEIRGEILMPWKV 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E        +ANPRNAASG L+ L+P  +  R L+ +++ L     + + G YE
Sbjct: 179 FEQLNAEREKAEEPLFANPRNAASGTLKSLDPKLVAKRKLDAYLYYL-LGDNVPSDGHYE 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+     GF V+ G+R+AN+   I  + N   + R  LP   DG+V KV+    Q+QLG
Sbjct: 238 NLKTAEAWGFKVSEGIRKANSLEQIYEFINHWDTARHNLPVATDGIVLKVNSLRQQQQLG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  TRL ++  Q+GRTG +TPVA +EPV + G  +  ATL+NE
Sbjct: 298 FTAKSPRWAIAYKFKAERVCTRLNEVTFQVGRTGAVTPVANMEPVLLAGTTVKRATLNNE 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I+ L           D+ +GD V V++ GE+IPK+V + V+ R PD QP  F S CP 
Sbjct: 358 DFIRSL-----------DLHIGDNVFVEKGGEIIPKIVGVDVSHRSPDLQPVHFISNCPE 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR          AA+ C     C  Q   R++HF++R A NI+ +G + +D +F+
Sbjct: 407 CGSPLVRYAGE------AAYYCPNDTGCPPQIKGRIEHFIARKAMNIDSIGPETIDDYFR 460

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +R  AD++ ++       T+  N  G    S   +   I    +   ER +F+
Sbjct: 461 K----GIVRNVADLYEIR-------TEQINGDGTRQKSAQKIVKGIQDSVSTPFERVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A+ LAK++ S                     L+ V  VG +IA+++V F+
Sbjct: 510 LGIRFVGETTAKLLAKHFKSIDALMTATPE----------QLVEVEGVGTVIAESVVRFF 559

Query: 617 QNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  N+  +E L +           ++  S ++  K +V +G  ++  R + +  +   G
Sbjct: 560 HDEVNLNIIERLRQHGLQMALSADQQQIASDKLAGKNIVISGVFERHSRDEYKAMIESNG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
               + +S KT  I+ G N G SK++KAQQLG+++++E+ FL +L+Q
Sbjct: 620 GKNVSSISNKTSFILAGANMGPSKMQKAQQLGIEMIDEDTFLNMLEQ 666


>gi|149184723|ref|ZP_01863041.1| DNA ligase [Erythrobacter sp. SD-21]
 gi|148832043|gb|EDL50476.1| DNA ligase [Erythrobacter sp. SD-21]
          Length = 690

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/717 (38%), Positives = 405/717 (56%), Gaps = 34/717 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ ++  +A  EL  L + I+ H+  Y+    P I D E+DAL RR   +   FP L R
Sbjct: 6   PVD-MTEAEAANELMRLARAIAKHNKLYHAEDAPEITDQEFDALVRRNAELEEQFPHLVR 64

Query: 68  SEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               + P   +G E+  S L KVTH +  +SL+  ++ E++ +++ R+ RF    +   +
Sbjct: 65  E---DSPSKVVGHEIAASPLSKVTHEVRMMSLDNAFSGEEVAEWVARVRRFLSLDESEEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T E KIDG   ++RYEKG+ V AA RGDG  GEDV+  I  I  IP+ LS ++PE+ E
Sbjct: 122 AITAEDKIDGLSCSLRYEKGRLVRAATRGDGQVGEDVTPNIAHIADIPQQLSGDVPEVFE 181

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           +RGEVY++K DF ALN      G K +ANPRNAA+G LR+ + +    R L F+ HG G 
Sbjct: 182 IRGEVYMAKADFSALNAAQEDAGGKLFANPRNAAAGSLRQKDASVTAKRPLRFWAHGWGA 241

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S +    Q E+++++   G PV+    + +    ++++Y ++   R  LPY+IDG+VYK
Sbjct: 242 ASAVPGATQEEVVRQIENWGVPVSPLFTRVHDVEAMLAHYAKIAKERPDLPYEIDGVVYK 301

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    Q++LG  A++PRW ++HKF  +QA T L  IDIQ+GRTG LTPV RL PV +GG
Sbjct: 302 VDRLDYQQRLGFVAKAPRWALAHKFPAEQAETTLEAIDIQVGRTGKLTPVGRLAPVLVGG 361

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +TN TLHN D I  L            +R GDRV+V+RAG+VIP++VD +   R    
Sbjct: 362 VTVTNVTLHNRDEIARL-----------GVRPGDRVVVQRAGDVIPQLVDNLT--RETSR 408

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF+FP  CP C S  V +            RCTGGL C AQ+ ERLKHFVSR A +I+G
Sbjct: 409 EPFAFPDHCPECGSEAVAEEGE------VDVRCTGGLICPAQRTERLKHFVSRGALDIDG 462

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ +D FF        +  PADIF L +R+         + G+ + SV  L DSI  R
Sbjct: 463 LGEKTIDQFF----ALGWLESPADIFHLHQRRDAILA----LEGWQERSVDKLVDSIEAR 514

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     R +F LGIRHVGA  AR L K++       +      A + +   SL  +  +G
Sbjct: 515 RAPDAARLLFGLGIRHVGAVTARDLMKHFHELPALREAAEAAHAGDEEAAASLTSIDGIG 574

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             + +A+ +F+    N    + ++ EV+P     E    S +  K +VFTG L+ + R +
Sbjct: 575 GAVVEALGDFFHEDHNKAVWDDIISEVTPPPYIVETK-ESPVSGKTVVFTGKLETMSRDE 633

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+    +LGA  S  +S KTD+++ G   GSKL+KA  LG+K+++E  +  ++ +  
Sbjct: 634 AKAQAERLGAKASGSVSAKTDLLVAGPGAGSKLKKAADLGIKVIDEAGWAKIVAEAG 690


>gi|299783520|gb|ADJ41518.1| DNA ligase, NAD-dependent [Lactobacillus fermentum CECT 5716]
          Length = 679

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/726 (34%), Positives = 394/726 (54%), Gaps = 51/726 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++   +  L+ +QA+ EL+ L +++      YY+   P + D  YD   +R   I  
Sbjct: 1   MSKQEA--VSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDL     P+ P  ++GG     L KVTH IP LS+  ++++ +L  F  R       
Sbjct: 59  RFPDLVV---PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSLAELADFNRRQQDNSDV 115

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K D    + LE KIDG  +++ YE G+ V  + RG+G  GEDV+  ++ I +IP+VL   
Sbjct: 116 KVD--FDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPE- 172

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  +E RGE Y+ K  F+ LN+   A G+  +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 173 -PLSLEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTF 231

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +     +    Q + L+KMR LGF VN   R  ++   + +Y  E    R  LPY I
Sbjct: 232 MYYVPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGI 291

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++ + Q  LG   + PRW I++KF  ++ +T + DI+  +GRTG +TP A ++
Sbjct: 292 DGIVEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMD 351

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY+             +DIR+GD VL+ +AG++IP++  +I+ 
Sbjct: 352 PVQLAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIE 400

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D++P+  P+ CP C + +V   +        A RC   + C AQ  E L HF SR+
Sbjct: 401 KRPADSKPYEVPTTCPECGADLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRN 453

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +        ++  AD++ L+  Q  +  K      FG+ S++NL 
Sbjct: 454 AMNIDGLGPKIIEQLWDKGM----VKDVADLYRLEAAQLLTLPK------FGEKSISNLL 503

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R+ S ER +F LGIRHVGA++A+ LA  + S           I+          
Sbjct: 504 TAIANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKSVDALMAADAATISA--------- 554

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTG 656
            V  +G II  A+  ++QN +    +  L +                S+E   K++V TG
Sbjct: 555 -VDSIGPIIGDAVATYFQNEQVHQLIAELKEVGVNMDYLAPTTSATESAEWAGKRVVLTG 613

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L K+ R +AQE+++  GA V+  +S+KTD++I G+  GSKLEKAQ LG+++ +E++F  
Sbjct: 614 KLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFDQ 673

Query: 717 LLQQYN 722
            +++ N
Sbjct: 674 AMKEEN 679


>gi|218248171|ref|YP_002373542.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 8801]
 gi|254781307|sp|B7K0A2|DNLJ_CYAP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218168649|gb|ACK67386.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8801]
          Length = 674

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/696 (32%), Positives = 366/696 (52%), Gaps = 51/696 (7%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
             +  YY    PI+ DS YD L R    +   +P L     P+ P  ++G +       +
Sbjct: 21  KANYAYYVLDNPIMEDSVYDQLYRELQDLESQYPILI---TPDSPTQRVGDQPAAQFNSI 77

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H+IP  SLE  +N+++L+K+  R  R+ Q  + +   +  E KIDG+ + + YE G  +
Sbjct: 78  RHNIPLYSLENAFNLQELQKWEERWQRYDQVSNSD---YVCELKIDGSALALTYEDGILI 134

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAV 208
               RGDG +GE+++  +R I +IP  L+L N P  +E+RGE ++  N+F  LN E    
Sbjct: 135 RGVTRGDGITGEEITQNVRTIRSIPLKLTLENPPSRVEIRGEAFLPLNEFDRLNGERKQA 194

Query: 209 GRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
           G   +ANPRNAA+G LR+L+   ++ R L FF + L    +     Q+E L+ ++ +GF 
Sbjct: 195 GEPLFANPRNAAAGTLRQLDSKVVSERRLQFFAYTLHLPEDNSLSSQWESLEWLKKMGFL 254

Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
           VN   +   T   +  Y+   ++ R  LPY  DG+V K+++++LQ QLG   + PRW I+
Sbjct: 255 VNPNCQLCPTLEAVADYFRHWETARHDLPYMTDGVVVKINDYALQNQLGFTQKFPRWAIA 314

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
            K+  ++A TR+ +I + +GRTG +TP+A +EPV++GG ++  ATLHN D +  L     
Sbjct: 315 LKYPAEEAPTRVKEIIVNVGRTGAVTPMAIMEPVHLGGTIVQRATLHNSDRVSEL----- 369

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                 DIRVGD V++++AGE+IP+V+ ++   R P+++P+  PS CP C S +VR +  
Sbjct: 370 ------DIRVGDTVIIRKAGEIIPEVLRVLPELRLPNSRPYQMPSHCPECGSTLVRPVGE 423

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC    +C A     + H+ SRDA +I GLG++ +    ++E     I   
Sbjct: 424 ------AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKIVSLLVENE----LITSI 472

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
           AD++ L   +  +  ++         S   L ++I   +  S  R ++ LGIR+VG   A
Sbjct: 473 ADLYQLTPEKVAALDRMGT------KSAQKLINAIEGSKRQSWPRVLYGLGIRYVGNVTA 526

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + L   + S +  +Q     +A           V  VG+ IAQ++ ++++   N   +E 
Sbjct: 527 KLLTDNFPSVEVLSQASVPTLA----------SVYGVGEEIAQSVFDWFKIVENQTLIEQ 576

Query: 628 LLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
           L           S        S  I  K  V TGTL  ++R++A+  + + G  V+  +S
Sbjct: 577 LKIAGLQLENIASQAVSLTPSSGNIAGKTFVLTGTLPTLKRNEAKALIEKAGGKVTGSIS 636

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            KTD ++VG+  GSKL KAQ+LG+  ++E   L  L
Sbjct: 637 SKTDYLVVGEEAGSKLAKAQELGITQLSEADLLKFL 672


>gi|89896634|ref|YP_520121.1| hypothetical protein DSY3888 [Desulfitobacterium hafniense Y51]
 gi|122997178|sp|Q24QL5|DNLJ_DESHY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89336082|dbj|BAE85677.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 659

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/706 (33%), Positives = 367/706 (51%), Gaps = 49/706 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + + +L ++I   +  YY   +P + D+EYDAL +    +    P+      P+ 
Sbjct: 1   MPDVSQRIEALREQIEEANYQYYGLDQPTLSDAEYDALLQELIRLEKEHPEFL---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KV H+   LSL+  ++  DL +F  R+           + + +E K
Sbjct: 58  PSQRVGGYIAKEFPKVRHAEALLSLDNAFDAGDLLEFDRRVRAL-----VAEVEYVVELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + + YE G  V  A RGDG  GE+++A ++ IP IP  L     + ++VRGE Y+
Sbjct: 113 IDGLTVALTYEDGALVRGATRGDGEVGEEITANLKTIPAIPLRLR-KQADRLDVRGEGYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  FL LN E    G+  +ANPRNAA+G LR+L+      R L +F + +    E    
Sbjct: 172 PKGSFLRLNQEREEAGQPLFANPRNAAAGSLRQLDSRITAQRKLGYFAYQVLTPEEGELA 231

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q  +L  ++  GF VN   R  +    +++Y  EM   R   PYDIDGLV KV++ + Q
Sbjct: 232 SQTAVLDYLKEQGFSVNPEYRVFSAIEEVIAYCGEMVEKRHNYPYDIDGLVIKVNDIAQQ 291

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  A+SPRW I++KF  +Q  T + DI I++GRTG+LTP A L PV + G+ +  AT
Sbjct: 292 RELGFTAKSPRWAIAYKFPAEQVETVVEDIVIRVGRTGVLTPTAYLTPVFVAGSTVGRAT 351

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+            +D+R+GD VL+++AG+VIP+VV I+  +R    + F  P 
Sbjct: 352 LHNLDNIRA-----------KDVRIGDHVLIQKAGDVIPEVVKILPEKRTGGERIFEMPE 400

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP CQS V+R+         AAHRCT  + C A+Q E + HFVSR+A NI+GLG   + 
Sbjct: 401 LCPECQSPVIREEGE------AAHRCT-SITCPARQREAIIHFVSRNAMNIDGLGPAVIY 453

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  I+  AD++ L+        +       G  S  NL  +I   +   L  
Sbjct: 454 QLLE----AGLIKDAADLYALEYDALVPLER------LGKKSAENLLKAIEDSKERGLAP 503

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF LGIRHVG +  + LA+ Y + ++  +               L  +P VG  +AQ++
Sbjct: 504 LIFGLGIRHVGEKAGKILAQKYGTMEDLEKA----------QVEELQEIPDVGPAMAQSV 553

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            +F+Q       +  L +       +H          K +V TG+LQ+  RH  +  + +
Sbjct: 554 AQFFQQESTHHFLNKLRQAGVVMSAQHSAK-PQIFAGKSIVVTGSLQRWDRHYVETMIEE 612

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G   ++ +S+KT  ++ G+  GSKL KA++LG+ +++EE+F  LL
Sbjct: 613 FGGKAASSVSKKTAFVVAGEKAGSKLAKAKELGIPVLSEEEFAELL 658


>gi|329115587|ref|ZP_08244309.1| DNA ligase [Acetobacter pomorum DM001]
 gi|326695015|gb|EGE46734.1| DNA ligase [Acetobacter pomorum DM001]
          Length = 710

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/718 (39%), Positives = 416/718 (57%), Gaps = 35/718 (4%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +   +P   ++++QAR+EL  L  EI++H+  YY+   P I D+EYDAL+RR DAI  
Sbjct: 16  MPEPAFLP-ATMTLQQAREELEHLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVA 74

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ- 119
             P    +E  N     +G   + +  K  H +P LSL+ +++ ED   FI+R  RF   
Sbjct: 75  QHPQ---AEPENSAAQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEGFISRATRFLGL 131

Query: 120 -KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
            ++    + F  EPKIDG  I++ YEKG+FV    RGDG  GEDV+A +R +  +P  LS
Sbjct: 132 DQEATEQLIFVGEPKIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANLRTLKDLPLRLS 191

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237
            + P++IE+RGEV++SK  FL LN    A  ++ +ANPRNAA+G LR+L+      R L+
Sbjct: 192 GSYPDLIEIRGEVFLSKKHFLELNAAQEAANKRLFANPRNAAAGSLRQLDSKITAQRPLS 251

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F + LG  SE  ++  +  L++++  GFPVN   RQ         ++ E+   R+ L Y
Sbjct: 252 LFAYALGFCSEKISRSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEVFFAEVSQNRAELAY 311

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYK+D+ +LQ++LG   R+PRW I+ KF  +QA TRL +I+IQ+GRTG LTPVA 
Sbjct: 312 DIDGVVYKIDDLALQERLGFAGRAPRWAIAWKFPAEQAVTRLKEIEIQVGRTGALTPVAH 371

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPVN+GG L+  ATLHNED I             +D+R GD V ++RAG+VIP+V+ + 
Sbjct: 372 LEPVNVGGVLVMRATLHNEDEIAR-----------KDVRPGDMVFIQRAGDVIPQVLGVA 420

Query: 418 VN-ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
            + +  P   P+ FP  CP C +  VR          A  RCTGGL C AQ +ERL HFV
Sbjct: 421 PSTDSTPRQAPYHFPDHCPACGAAAVRPEGE------AVRRCTGGLTCPAQVVERLIHFV 474

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR AF+IEGLG + +  F         I  P DIF L          IE   G+G+ SV 
Sbjct: 475 SRQAFDIEGLGDRSIREFHD----IGLILTPGDIFRLHEH----AADIEKRDGWGEQSVQ 526

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            L  +I  RR ISL RFI++LGIR +GA  AR LA++Y +Y+N+  ++       +D  L
Sbjct: 527 KLLQAIESRRTISLSRFIYALGIRRIGASNARLLARHYGTYENWFNQMQAAAIIGSDARL 586

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            L  +  +G   A+ +V F     N+  +  L   ++  I          +  K +VFTG
Sbjct: 587 ELGSITGIGTTTAEDLVAFVAEEHNLQTLADLRANLT--ITEETAASEGALAGKTIVFTG 644

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TL  + R +A+    ++GA VS  +S+KTD++++G+  GSK +KA +LG++ M+E ++
Sbjct: 645 TLHTMTRPEAKATAERMGAKVSDSVSKKTDLVVLGEKAGSKAKKAVELGLQTMDEAEW 702


>gi|166216279|sp|A0LI67|DNLJ_SYNFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 675

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/712 (37%), Positives = 385/712 (54%), Gaps = 51/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A   + +L +EI +H+  YY   +P I D  YD L R    +  ++P L     P+ P
Sbjct: 5   EKAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALI---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G           H+IP LSLE   +  ++ +F  R+ +     D   + F  EPK+
Sbjct: 62  TQRVGAAPAEKFLPFPHTIPMLSLENAMSEAEVFEFARRVRKILG--DRGDVDFMAEPKM 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----SLNIPEIIEVRG 189
           DG  + + YE G+   A  RGDG+ GEDV+   + I  IP  L       + P  I VRG
Sbjct: 120 DGLAVELVYENGELTGAGTRGDGYVGEDVTRNAKTIRAIPLKLYAGAGGASPPARIAVRG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+ + DF ALN      G   +ANPRNAA+G LR+L+P+    R L  F +G+G+ S 
Sbjct: 180 EVYMDRKDFAALNRSREQAGEPLFANPRNAAAGSLRQLDPSVTAARSLKAFFYGVGEVSG 239

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q + L+++R  G PVN   R   +    VS+YNE+ + R  LP++IDG+V KV+ 
Sbjct: 240 YRFKTQAQTLEQLRRWGLPVNPLSRVCPSIEDAVSFYNEIAAGRDALPFEIDGVVVKVNS 299

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+ LGE++RSPRW I++KF+  QA TR+LDI +Q+GRTG+LTPVA LEPV +GG  +
Sbjct: 300 IEWQEMLGEKSRSPRWAIAYKFSPHQARTRVLDIKVQVGRTGVLTPVAELEPVTVGGVTV 359

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN+D ++            +DIRV D+V+V+RAG+VIP+VV++I   R    + F
Sbjct: 360 RRATLHNQDEVER-----------KDIRVRDQVMVRRAGDVIPEVVEVIGEARTGGEEVF 408

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C S VVR          A HRC     C AQ    L+HF SRDA NIEGLGK
Sbjct: 409 QMPGQCPSCGSEVVRLPEE------AVHRCLN-RNCPAQIKASLRHFASRDAMNIEGLGK 461

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +            +   +D++ L      S   +E + GF   S  NL +SI + +  
Sbjct: 462 NIVSMLVDR----GIVESVSDLYRL------SVETLEQLPGFAGKSSRNLVESIERSKKT 511

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L  F+++LGI HVG+ +AR LA+ + +     +               L+ V  VG+++
Sbjct: 512 NLADFLYALGIYHVGSHVARLLAERFGTLDAVRRA----------SVEELMSVNGVGEVV 561

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKA 666
           A+++V ++  P N   VE+LL           +   V +    K +VFTG L  + R  A
Sbjct: 562 ARSVVHYFSLPANRTLVESLLSAGLEMAATEPEAGPVDAFWNGKTVVFTGALSSMTRSNA 621

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
                  GA VS  +SRKTDI++ G +PGSK+EKA+QLG+ I++E +FL  L
Sbjct: 622 AALTASRGARVSDSVSRKTDIVVAGADPGSKVEKARQLGITILDEREFLERL 673


>gi|299771367|ref|YP_003733393.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1]
 gi|298701455|gb|ADI92020.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1]
          Length = 679

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/719 (36%), Positives = 382/719 (53%), Gaps = 47/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +PD  +S   
Sbjct: 1   MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDQVQS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 58  DSPTTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLP---NQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVR 188
            K+DG  I++ YE G  +    RGDG +GED++  ++ I  +P+VL  +   IP ++EVR
Sbjct: 115 LKLDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCE 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PNHNLTTMHDSLQWLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R P+A+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRSPEAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 IVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           ++  ADI+ L   ++T       I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLL----HLDLLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +          A    D  +L + P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLE----------ALKAADVEALKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L                  +  +  V TGTL+++ R +A
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQTL 677


>gi|308172548|ref|YP_003919253.1| DNA ligase [Bacillus amyloliquefaciens DSM 7]
 gi|307605412|emb|CBI41783.1| DNA ligase [Bacillus amyloliquefaciens DSM 7]
 gi|328910657|gb|AEB62253.1| DNA ligase [Bacillus amyloliquefaciens LL3]
          Length = 669

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 401/715 (56%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+     L + I  +   YY   +P + DSEYD L +   AI    P+L     P
Sbjct: 2   MDKETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTP 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  S  KV H  P LSL   +N +D    +    R  ++   + + + +E
Sbjct: 59  DSPTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDGVAYNVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  N+   IEVRGE 
Sbjct: 115 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNL--SIEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 173 FMPKQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   +Q  T   ++    E+++ R+ LPY+IDG+V KVD   
Sbjct: 233 VETQSQGLDFLDELGFKTNQERKQCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLD 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 293 QQEELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV++++ +R  + + F+ 
Sbjct: 353 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTVCPECESELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L + Q     ++      G+ S  NL  SI K +  SL
Sbjct: 455 ITQLFREH----LVRNVADLYKLTKEQVIRLERM------GEKSTDNLISSIQKSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  Q     +          + V  +G+ +A 
Sbjct: 505 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEEL----------LAVDEIGEKMAD 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           A++ +++    +  +  L +    ++ +  K V +E        K +V TG L+++ R++
Sbjct: 555 AVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+KTD++I G+  GSKL KAQ+L +++ +E Q L  L++
Sbjct: 615 AKTQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWDEAQLLGELKK 669


>gi|332529208|ref|ZP_08405172.1| DNA ligase [Hylemonella gracilis ATCC 19624]
 gi|332041431|gb|EGI77793.1| DNA ligase [Hylemonella gracilis ATCC 19624]
          Length = 738

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/744 (33%), Positives = 383/744 (51%), Gaps = 91/744 (12%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           ++ +H   YY    P I D+EYD L +   AI  A P+L     P+ P  ++ G++   L
Sbjct: 31  QLHHHAHRYYVLDAPEIPDAEYDRLFQELQAIEAAHPEL---RTPDSPTQRVIGQVLDGL 87

Query: 87  FKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKKDDN-SIFFTLEPKIDGTMITIRY 143
             V H++P LS++   +   E  R F TR+ +     +    + +  E K DG  I +RY
Sbjct: 88  LPVRHAVPMLSIDTETDTTPEGARAFDTRVRKALGLGEGASPVEYAAELKFDGLAINLRY 147

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-------------------------- 177
           E+G  V AA RGDG +GEDV+  IR I  IP  L                          
Sbjct: 148 ERGVLVQAATRGDGETGEDVTQNIRTINQIPLRLLAPTLPAARGSLPPSPSNAQDALEPG 207

Query: 178 -------------SLNIPEIIEVRGEVYISKNDFLALNDEMIAV------GRKPYANPRN 218
                        +   PE++EVRGEVY+ ++DF ALN+           G K + NPRN
Sbjct: 208 VRFALGLPGGETMTSWPPEVLEVRGEVYMRRDDFEALNERQREKIAAGAKGEKTFINPRN 267

Query: 219 AASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQAN 276
            A+G +R+L+P     R L+F+ +GLG+           +++     +G PV        
Sbjct: 268 TAAGAVRQLDPAMAAQRPLSFYAYGLGEARGWTLPATHGQVMDAFVAMGLPVCEHRALGA 327

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
               +V ++  M ++R +LP+DIDG+VYKV+  +LQ+QLG ++R PRW ++HK+  ++  
Sbjct: 328 GAEALVDFHARMGALRDSLPFDIDGVVYKVNSLALQQQLGFKSREPRWAVAHKYPAQEML 387

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           T +  I++Q+GRTG LTPVA+L PV +GG  +TNATLHNE   +            +D+R
Sbjct: 388 TTVQAIEVQVGRTGKLTPVAKLAPVFVGGVTVTNATLHNELEARR-----------KDVR 436

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           VGD V+V+RAG+VIP+VV ++ ++R P A  F+ P+ CP+C S  VR+         A H
Sbjct: 437 VGDTVIVRRAGDVIPEVVGVLPDKRPPGAPEFTMPTSCPVCGSAAVREEGE------ADH 490

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RCTGGL CSAQ+ + L HF  R A +IEGLG + +D     E     ++   D++ L   
Sbjct: 491 RCTGGLFCSAQRKQALLHFAQRRAMDIEGLGDKLVDQLVDGE----VVKTLPDLYRL--- 543

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                T +  +    + S  N+ D++ K +  +L RF++ LGIRHVG   A+ LA+++  
Sbjct: 544 ---GLTSLAALERMAEKSAQNIVDALQKSKQTTLPRFLYGLGIRHVGESTAKDLARHFGQ 600

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPS 635
                      +          +  P VG ++AQ+I  F++   N   VE      V  +
Sbjct: 601 LDAIMDAGVEAL----------MEAPDVGPVVAQSIRTFFEQAHNREVVEQLRACGVQWA 650

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
            G         +  +  V TGTL  + R +A+E +   GA V+  +S+KT  ++ G+  G
Sbjct: 651 EGEPAPRALLPLAGQTFVLTGTLPTLSREEAKEMLEAAGAKVAGSVSKKTSYVVAGEEAG 710

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKL+KA++LGV +++E +   LL+
Sbjct: 711 SKLDKARELGVPVIDEAKMQALLK 734


>gi|262280095|ref|ZP_06057880.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
 gi|262260446|gb|EEY79179.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
          Length = 692

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/719 (36%), Positives = 382/719 (53%), Gaps = 47/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +S   
Sbjct: 14  MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEQVQS--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 71  DSPTTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLP---NQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVR 188
            K+DG  I++ YE G  +    RGDG +GED++  ++ I  +P+VL  +   IP ++EVR
Sbjct: 128 LKLDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGDKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCE 247

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 248 PNHGLITMHDSLQWLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R PDA+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRSPDAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 IVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           ++  ADI+ L   ++T       I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLL----HLDLLKDVADIYHLHEHRETLL----GIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +          A    D  +L + P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLE----------ALKAADVEALKKTPDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L                  +  +  V TGTL+++ R +A
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRL-IAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL
Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIIVMNETDFLSLMASYGQTL 690


>gi|326334401|ref|ZP_08200613.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325693368|gb|EGD35295.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 670

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/706 (31%), Positives = 378/706 (53%), Gaps = 48/706 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++ +L  E++ H+  YY    P I D E+D   +    + H +P     +DPN P  ++
Sbjct: 7   QQIETLRTELNEHNYNYYVLDSPTISDYEFDQKLKHLQELEHQYPQY---KDPNSPTVRV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+  +   + H     SL+  ++ E+L+++  R+ +   K   + I F  E K DG  
Sbjct: 64  GGEITKNFPTIVHEFRMYSLDNSYSKEELKEWEKRVLKLLGK---DKISFVCELKYDGAS 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + Y+ GK V A  RGDG  G++++A +R I ++P  L  + PE   +RGE+ I K  F
Sbjct: 121 IDLTYDAGKLVQAVTRGDGIQGDEITANVRTIRSVPLTLKGDYPEYFHIRGEIIILKEGF 180

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N++ IA G  PY NPRN ASG L+  + T++  R L+  ++ +   + +  + Q+E 
Sbjct: 181 KRMNEQRIAEGEDPYMNPRNTASGSLKLQDTTEVAKRPLDCLLYYVV-GNNLPIQTQFEG 239

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K R  GF V    +  ++   ++ + N   + R  LPY+ DG+V KV++F  Q++LG 
Sbjct: 240 LRKAREWGFKVPTQSKLCHSTQEVMDFINYWDTHRHDLPYETDGVVIKVNDFQAQQELGY 299

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++SPRW I++KF  ++ +T L  I  Q+GRTG +TPVA L PV + G ++  A+LHN D
Sbjct: 300 TSKSPRWAIAYKFKAEEVTTTLESISYQVGRTGAITPVANLTPVLLAGTIVKRASLHNAD 359

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I  L           D+ +GD+V V++ GE+IPK+  +  +ER  +A   +F + CP C
Sbjct: 360 QIAKL-----------DLHLGDQVFVEKGGEIIPKITGVKTDERKANATTVTFITHCPEC 408

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            + +VR+         A H C     C  Q   R++H++SR A +IEGLG + ++  F+ 
Sbjct: 409 GTALVRNEGE------AQHYCPNAYGCPPQITGRIQHYISRKAMDIEGLGSETVELMFR- 461

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  I   AD++ L+        +I+N+   G+ S  N+ + I K + I  +R +F+L
Sbjct: 462 ---AGLIHNYADLYELK------VEQIQNLERMGERSAKNIIEGIEKSKEIPFDRVLFAL 512

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+  A+ Y + + F              +  L ++  +GD IAQ+++EF+ 
Sbjct: 513 GIRMVGETVAKKFARIYKTLEAFRSAT----------YEQLTQIDEIGDRIAQSVIEFFA 562

Query: 618 NPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + RN   +E L         +      +S  ++ K LV +G   +  R + +  +   G 
Sbjct: 563 DDRNKVILERLQSYGVQFALKETANFPLSDILKGKTLVVSGVFARYSRDELKALIENHGG 622

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V + +S KT  ++ G+N G SKLEKA QLG+ I++E++F  ++ +
Sbjct: 623 KVGSSISSKTSYVVAGENMGPSKLEKATQLGIPILSEKEFEQMIGE 668


>gi|147678862|ref|YP_001213077.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
 gi|190359268|sp|A5CZ68|DNLJ_PELTS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146274959|dbj|BAF60708.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
          Length = 679

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/702 (35%), Positives = 372/702 (52%), Gaps = 57/702 (8%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           I +H+  YY   +P I D++YD L R  + +   FP L     P  P  ++GG       
Sbjct: 19  IEHHNYLYYVLDRPAITDAQYDRLMRELERLEKQFPALV---TPYSPTQRVGGRPREGFA 75

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            V H  P LSL   ++  +LR F  R+ +         + + +E KIDG  +++ YE G 
Sbjct: 76  AVRHLSPMLSLANAFDERELRDFDRRVRQALP---GEQVRYVVELKIDGLAVSLYYENGI 132

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V  A RGDG +GED++  ++ + ++P  L   +P + EVRGE ++ K  F  LN+    
Sbjct: 133 LVRGATRGDGDTGEDITENLKTVRSVPLRLRRPVPAL-EVRGEAFMPKEAFSRLNEGREE 191

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE---IFAKG-------QYE 256
            G   +ANPRNAA+G LR+L+P    +R L+ FV+G G       +F  G         E
Sbjct: 192 AGETLFANPRNAAAGSLRQLDPKITASRQLDLFVYGTGYGEWGRAVFPDGERTAPQEHAE 251

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ ++ LGF VN   R  +    +V Y    ++ R  LPY +DGLV KV+  + Q++LG
Sbjct: 252 VLELLKELGFKVNPEYRLFDRLDELVEYCLGWQARRFELPYAVDGLVIKVNSLAQQERLG 311

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW +++KF  +QA T++ DI +++GRTG+LTP A LEPV + G  ++ ATLHNE
Sbjct: 312 ATMKSPRWAVAYKFPPEQAVTKVKDIFVRVGRTGVLTPTAELEPVRLAGTTVSRATLHNE 371

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD+VLV++AG++IP+VV ++  ER    + ++ P  CP 
Sbjct: 372 DIIR-----------EKDIRIGDKVLVQKAGDIIPEVVAVLKEERTGAEKAWAMPGRCPS 420

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + VVR          AA RCT  +AC A+  E L HF SRDA +I GLG   +     
Sbjct: 421 CGAGVVRAEGE------AAVRCTN-MACPARLQEGLIHFASRDAMDIAGLGPAVIAQLVS 473

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +  PAD++ L+        +       G  S  NL ++I   +  SL R IF+
Sbjct: 474 ----AGLVGDPADLYALRYEDLVPLER------LGPKSARNLLEAIEASKGRSLARLIFA 523

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG   A+ LA +Y S           +          + +P +G  IA +IVEF+
Sbjct: 524 LGIRHVGERAAKILANHYQSLSGLMSATQEEL----------VNIPEIGPKIAASIVEFF 573

Query: 617 QNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            N +N   ++ L+K    ++     +     +  K  V TG L+   R +AQE +  LG 
Sbjct: 574 SNEQNRKVIDKLVKAGVNTLTEKVIREGGGPLNGKVFVLTGVLKDFSRQQAQELIESLGG 633

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +S+ +SR TD ++ G+NPGSK EKA  LGVKI++E +F  L
Sbjct: 634 RISSSVSRNTDFVVAGENPGSKYEKALTLGVKILDENEFREL 675


>gi|328552313|gb|AEB22805.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens TA208]
          Length = 668

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 401/715 (56%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+     L + I  +   YY   +P + DSEYD L +   AI    P+L     P
Sbjct: 1   MDKETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  S  KV H  P LSL   +N +D    +    R  ++   + + + +E
Sbjct: 58  DSPTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDGVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  N+   IEVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNL--SIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 FMPKQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   +Q  T   ++    E+++ R+ LPY+IDG+V KVD   
Sbjct: 232 VETQSQGLDFLDELGFKTNQERKQCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 292 QQEELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV++++ +R  + + F+ 
Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTVCPECESELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L + Q     ++      G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFREH----LVRNVADLYKLTKEQVIRLERM------GEKSTDNLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  Q     +          + V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEEL----------LAVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           A++ +++    +  +  L +    ++ +  K V +E        K +V TG L+++ R++
Sbjct: 554 AVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+KTD++I G+  GSKL KAQ+L +++ +E Q L  L++
Sbjct: 614 AKTQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWDEAQLLGELKK 668


>gi|258544861|ref|ZP_05705095.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
 gi|258519884|gb|EEV88743.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
          Length = 668

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/705 (36%), Positives = 392/705 (55%), Gaps = 48/705 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            L++L +EI  HD  YY    P+I D+EYDAL R   A+  A  +   +   + P  ++G
Sbjct: 6   RLAALREEIRAHDHAYYVLDNPLIADAEYDALLRELRALEAASGEPVPA---DSPSQRVG 62

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+ + +   V H++P LSL+ +++ E+   F+ R+       D + +  + EPK DG  I
Sbjct: 63  GKADGAFAPVAHAVPMLSLDNVFSEEEFAAFVKRLQERL---DHDELLLSAEPKFDGLAI 119

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           ++RYE G    AA RGDG +GEDV+A +R I  IP R+L    P +IE+RGE+Y+ K  F
Sbjct: 120 SLRYENGVLTRAATRGDGATGEDVTANVRTIRAIPLRLLDATPPAVIEIRGEIYMPKAAF 179

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQYE 256
            ALN      G K +ANPRNAA+G LR+L+P    +R+L+F+ +GLG             
Sbjct: 180 AALNAAAERDGGKTFANPRNAAAGSLRQLDPAITASRHLSFYAYGLGAHDGYALPATYSA 239

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L + R  G PV       ++    V+Y + +   R  LPY+IDG+VYK D ++ Q+  G
Sbjct: 240 LLAQYRDWGVPVCPLQESLSSAAAAVAYMDALGKKRHDLPYEIDGVVYKADRYADQQAAG 299

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+ KF   + +T +  ID+Q+GRTG +TPVARL PV +GG  +TNATLHN 
Sbjct: 300 FVSRAPRWAIAWKFPAVEKTTVVEAIDVQVGRTGAVTPVARLRPVEVGGVTVTNATLHNA 359

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D +             +D+RVGD V V+RAG+VIP++V  ++  R  D+QPF+ P+ CP+
Sbjct: 360 DEVAR-----------KDVRVGDTVFVRRAGDVIPEIVKTVLEARPADSQPFAMPTHCPV 408

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S ++R          A  RC+GGL C AQ+++ L HF SR A +I+GLG + ++   +
Sbjct: 409 CESEIIRPEGE------AVARCSGGLHCRAQRVQALIHFASRKALDIQGLGDKLIEQLVQ 462

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +  PAD+F L             +    + S  N+  ++   +  +L RFI++
Sbjct: 463 DGR----VHSPADLFALT------LADWAALPRMAEKSAQNILAALEAAKATTLPRFIYA 512

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A  LA++Y       +E+  ++A + DD  +   +  +G ++AQ I  F+
Sbjct: 513 LGIREVGNVSAELLARHY-------RELPALLAASEDDLQA---IDGIGPVMAQYIRHFF 562

Query: 617 QNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  N   + AL       P +        S +  K +V TGTL  + R +A  ++ +LG
Sbjct: 563 LDDANRAVIAALQAAGIHWPVVEAPVIAADSPLAGKTVVITGTLPTMTRDEAAAHIARLG 622

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              ++ +S+KTD ++ GD  GSKLEKAQ LGV I++E Q L  L+
Sbjct: 623 GKTASAVSKKTDYLLAGDKAGSKLEKAQSLGVAIIDEAQLLAWLE 667


>gi|296135970|ref|YP_003643212.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
 gi|295796092|gb|ADG30882.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
          Length = 688

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/708 (34%), Positives = 373/708 (52%), Gaps = 52/708 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            Q  +  + L  EI+  D  YY    P+  D++YDAL R    I    P+L     P+ P
Sbjct: 8   AQPAERAAQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPEL---RTPDSP 64

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKK-DDNSIFFTLE 131
             ++GG        V H++P LS++   +   E    F  R+        DD  + +  E
Sbjct: 65  TQRVGGAPLPEFAPVRHAVPMLSIQTETDTTPEGAVAFDQRVRNRLGLSADDPPVNYCAE 124

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++RYE G+ V AA RGDG +GEDV+  +R I ++P  L  N P ++EVRGE 
Sbjct: 125 LKFDGLAISLRYEHGQLVQAATRGDGETGEDVTQNVRTIRSVPLQLRGNPPAVLEVRGEA 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            + + DF   N      G     NPRN A+G +R+L+P     R L F+ +G G+ ++  
Sbjct: 185 LMKRADFERYNARQRDKGLPTLVNPRNGAAGSIRQLDPAIAAQRPLAFYAYGWGEIADWA 244

Query: 251 --AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 + ML      G PV            ++ ++  + + R +LP+DIDG+VYKVD 
Sbjct: 245 QQPDTHHAMLDAFETFGLPVAPQRVHGPGAQTLIDFHARIAAARDSLPFDIDGVVYKVDS 304

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG R R P W ++HK+  ++ ST+++ IDIQ+GRTG LTPVA+LEPV +GG  +
Sbjct: 305 LALQRELGFRNREPVWAVAHKYPAQERSTKVIGIDIQVGRTGKLTPVAKLEPVFVGGVTV 364

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQP 427
           TNATLHNED ++            +D+RVGD V+V+RAG+VIP+VV ++++ R  D  +P
Sbjct: 365 TNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEVVSVVMSARPADVGEP 413

Query: 428 FSFPS----FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           F         CP+C S +VR+         A  RCTGGL C+AQ+ + + H+ SR A +I
Sbjct: 414 FDLYQRLGGQCPVCGSAIVREAGE------ADWRCTGGLFCAAQRKQAILHYASRRAMDI 467

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++ +D        A  +R+  D++ L         K+  +    + S  NL  ++ 
Sbjct: 468 EGLGEKLVDQLVD----AGIVRVLPDLYRL------GLLKLAALDRMAEKSAANLLQALQ 517

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIRHVG   A+ LA+++                       L+ VP 
Sbjct: 518 ASKTTTLARFLYALGIRHVGEATAKDLARHFGGLDAILDA----------SLEQLLEVPD 567

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           VG ++AQ+I  F+  P N   VE L    V  S    +++    +  K LV TG L  + 
Sbjct: 568 VGPVVAQSIRTFFDQPHNREVVEQLRACGVHWSEAAPDRDAPKPLAGKTLVLTGILPTLS 627

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           R +A+  +   G  V+  +S+KTD ++ G   GSKL KAQ+LGV +++
Sbjct: 628 REEAKARIEAAGGKVAGSVSKKTDYVVAGAEAGSKLAKAQELGVTVLD 675


>gi|184155951|ref|YP_001844291.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956]
 gi|254781353|sp|B2GDS9|DNLJ_LACF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183227295|dbj|BAG27811.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956]
          Length = 679

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/726 (34%), Positives = 394/726 (54%), Gaps = 51/726 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++   +  L+ +QA+ EL+ L +++      YY+   P + D  YD   +R   I  
Sbjct: 1   MSKQEA--VSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDL     P+ P  ++GG     L KVTH IP LS+  ++++ +L  F  R       
Sbjct: 59  RFPDLVV---PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSLAELADFNRRQQDNSDV 115

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K D    + LE KIDG  +++ YE G+ V  + RG+G  GEDV+  ++ I +IP+VL   
Sbjct: 116 KVD--FDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPE- 172

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  +E RGE Y+ K  F+ LN+   A G+  +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 173 -PLSLEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTF 231

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +     +    Q + L+KMR LGF VN   R  ++   + +Y  E    R  LPY I
Sbjct: 232 MYYVPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTKKRDQLPYGI 291

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++ + Q  LG   + PRW I++KF  ++ +T + DI+  +GRTG +TP A ++
Sbjct: 292 DGIVEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMD 351

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY+             +DIR+GD VL+ +AG++IP++  +I+ 
Sbjct: 352 PVQLAGTTVSRASLHNPDYL-----------VEKDIRLGDTVLLHKAGDIIPEISRVIIE 400

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D++P+  P+ CP C + +V   +        A RC   + C AQ  E L HF SR+
Sbjct: 401 KRPADSKPYEVPTTCPECGADLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRN 453

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +        ++  AD++ L+  Q  +  K      FG+ S++NL 
Sbjct: 454 AMNIDGLGPKIIEQLWDKGM----VKDVADLYRLEAAQLLTLPK------FGEKSISNLL 503

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R+ S ER +F LGIRHVGA++A+ LA  + S           I+          
Sbjct: 504 TAIANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKSVDALMAADAATISA--------- 554

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTG 656
            V  +G II  A+  ++QN +    +  L +                S+E   K++V TG
Sbjct: 555 -VDSIGPIIGDAVATYFQNEQVHQLIAELKEVGVNMDYLAPTTSATESAEWAGKRVVLTG 613

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L K+ R +AQE+++  GA V+  +S+KTD++I G+  GSKLEKAQ LG+++ +E++F  
Sbjct: 614 KLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFDQ 673

Query: 717 LLQQYN 722
            +++ N
Sbjct: 674 AMKEEN 679


>gi|159897339|ref|YP_001543586.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779]
 gi|254781348|sp|A9AXP4|DNLJ_HERA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|159890378|gb|ABX03458.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779]
          Length = 673

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/710 (34%), Positives = 366/710 (51%), Gaps = 50/710 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQ     +SL  E++ ++  YY    P++ D++YD+L     AI   +P+L     P+ P
Sbjct: 5   EQTVARAASLRDELNLYNHHYYTLDAPLVSDAQYDSLLNELRAIEAEYPEL---RTPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G        KV H +P LSL   +N +DL  +  R  +         + +T+EPKI
Sbjct: 62  TQRVGSAPLSKFPKVQHPVPMLSLGNAFNADDLAAWRRRAEQIIGT---QPMSYTVEPKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGE 190
           DG  + + Y  G F   A RG+G  GED++A +R I  +P  L       +PE IEVRGE
Sbjct: 119 DGLAVALTYINGVFSVGATRGNGEIGEDITANLRTIRDVPLRLQPIDGQALPERIEVRGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    F  LN+     G K +ANPRNAA+G LR+L+ T   +R L FF + +G  S +
Sbjct: 179 VYLPIESFNQLNERQAHAGEKVFANPRNAAAGSLRQLDSTITASRPLRFFAYAVGPFSGV 238

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K Q + L  +R  GF VN   R    F  ++ Y +E  S R +L Y++DG+V K+++F
Sbjct: 239 ELKSQAQTLDTLRTYGFSVNPDTRLFADFEAVIEYCHEWMSRRESLSYEVDGVVVKINDF 298

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++Q++LG   R PRW I++KF  ++ +T LL+I I +GRTG L P A LEPV++GG  + 
Sbjct: 299 AMQRELGVVGRDPRWAIAYKFPAREETTTLLNIVINVGRTGKLIPNAVLEPVSLGGTTVQ 358

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           +A+LHN DYI             RDIR+GDRV+VKRAG+VIP V+  IV  R  D + + 
Sbjct: 359 HASLHNADYIIS-----------RDIRIGDRVVVKRAGDVIPYVIGPIVEARTGDERVWP 407

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C   V +  +           C     C A+ +  ++H+VSR A +I G+G++
Sbjct: 408 APTHCPTCGQPVEQIGDE------VDIYCVNN-TCPARLIRSIEHWVSRGAMDIVGMGER 460

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           Q   F +       I+   DI+ L               G+G+  V NL ++I + +   
Sbjct: 461 QASQFVE----MGLIKSIPDIYRLT------VDSFGGREGYGERRVANLLNAIEESKRRP 510

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L+R I +LGI  VG   A  LA+Y+ S    AQ               L  +  +G   A
Sbjct: 511 LDRVITALGINGVGTVAAADLARYFRSLPALAQAT----------IEQLTAIEGIGGSTA 560

Query: 610 QAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           Q++V+F+  P N   +   L   +        +  S  +  K  V TGTL  I R  AQ 
Sbjct: 561 QSVVDFFNTPANQQLIAELLALGLKAEPSEVAELQSDRLAGKSFVITGTLPGISREAAQA 620

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +   G  V   +S+KTD ++ G+  GSKL KAQ LGVK+++ ++   LL
Sbjct: 621 LIEAHGGKVGGSVSKKTDYLLAGEAAGSKLTKAQSLGVKVLSMDELHALL 670


>gi|157826142|ref|YP_001493862.1| NAD-dependent DNA ligase LigA [Rickettsia akari str. Hartford]
 gi|166216231|sp|A8GPM9|DNLJ_RICAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157800100|gb|ABV75354.1| DNA ligase [Rickettsia akari str. Hartford]
          Length = 689

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/712 (37%), Positives = 411/712 (57%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S  +A+K L  L  +I+ ++  YY    P++ D+EYD L      +   FP L   
Sbjct: 4   IDFISEAEAKKLLEELSCKIAAYNHAYYIEDNPLVSDAEYDQLVNINLKLEQQFPHLVLE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  ++G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKEVGAKIANKFVKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G  +  A RGDG+ GED++A I+ I   P  +  N PE +EVR
Sbjct: 120 -CEPKIDGLSFSAIYKNGLLITGATRGDGYVGEDITANIKTIKNFPHKI-DNAPECLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN+E    GR  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNEEQEEQGRDQFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF VN   +   +   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKKFGFSVNEISKLTKSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFELQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+++ D V ++RAG+VIPK+    + +R  D   
Sbjct: 358 VSRATLHNFQEIVR-----------KDVQIKDYVFLQRAGDVIPKITGADIEKRPNDTIA 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FCP C S++               RC  GL C AQ  ER++HFVS++A +I GLG
Sbjct: 407 FEAPLFCPSCNSKLYYVPEDI------IIRCDNGLNCPAQHYERIRHFVSKNAMDIAGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L++  + S  K+EN+ G+G  SV  L  +I K +N
Sbjct: 461 RKQVEFLIAK----GLISNPLDIFFLKKNNEASLIKLENMDGWGQKSVEKLLKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +++D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLSKNDSDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I+ F     NI  ++ L + ++      E    S +  K +VFTG+L  I R + +
Sbjct: 577 ILIDIIAFLDVKENIQLIKKLGEILNIE-DYKETRAQSSLTGKIVVFTGSLPTISRAEVK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+A +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAASVSSNTDLVVAGLDAGSKLQKAKELNIKIIDEEEWLTLIK 687


>gi|154685157|ref|YP_001420318.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens FZB42]
 gi|166215394|sp|A7Z261|DNLJ_BACA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154351008|gb|ABS73087.1| LigA [Bacillus amyloliquefaciens FZB42]
          Length = 669

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 401/715 (56%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+     L + I  +   YY   +P + DSEYD L +   AI    P+L     P
Sbjct: 2   MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTP 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  S  KV H  P LSL   +N +D    +    R  ++   + + + +E
Sbjct: 59  DSPTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDGVAYNVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  N+   IEVRGE 
Sbjct: 115 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNL--SIEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 173 YMPKQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   ++  T   ++    E+++ R+ LPY+IDG+V KVD   
Sbjct: 233 VETQSQGLDFLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLD 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 293 QQEELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV++++ +R  + + F+ 
Sbjct: 353 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTGCPECESELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L + Q     ++      G+ S  NL  SI K +  SL
Sbjct: 455 ITQLFREH----LVRNVADLYKLTKEQVIRLERM------GEKSTDNLISSIQKSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  Q     +          + V  +G+ +A 
Sbjct: 505 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKQVTEEEL----------LAVDEIGEKMAD 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           A++ +++    +  +  L +    ++ +  K V +E        K +V TG L+++ R++
Sbjct: 555 AVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+KTD++I G+  GSKL KAQ+L +++ NE Q L  L++
Sbjct: 615 AKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEAQLLGELKK 669


>gi|119512036|ref|ZP_01631131.1| DNA ligase [Nodularia spumigena CCY9414]
 gi|119463326|gb|EAW44268.1| DNA ligase [Nodularia spumigena CCY9414]
          Length = 678

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/711 (32%), Positives = 367/711 (51%), Gaps = 54/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L Q +      YY    P++ D+ YD L R    +   +P+      P+ P  ++
Sbjct: 9   KRVEELRQLLQQASYAYYVLDAPMMEDAVYDQLYRELQELEIKYPEFI---TPDSPTQRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +       V H+IP  SLE  +NI++L+ +  R  R   K +  ++ +  E KIDG+ 
Sbjct: 66  GEKPATHFTSVRHNIPLYSLENAFNIDELQIWDQRWRRQTPKIE--AVEYVSELKIDGSA 123

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISK 195
           + + YE G  V    RGDG  GED++  +R I +IP  L        E IEVRGEV++  
Sbjct: 124 LALTYENGILVRGVTRGDGVVGEDITQNVRTIRSIPLRLNFAGAKSLEKIEVRGEVFLPL 183

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTSEIFA 251
             F  +N E    G   +ANPRNAA+G LR+L+P  +  R L+FF + L   G      A
Sbjct: 184 EVFKQINAERQKAGEHIFANPRNAAAGTLRQLDPRIVAQRRLDFFAYTLHISGMDDASIA 243

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q+E L+ +  +GFPVN   +   +   +  YY    + R  LPY  DG+V K++ F L
Sbjct: 244 NTQWEALELLEKMGFPVNPNHKLCRSLTEVAQYYQSWDTKRLNLPYMTDGVVVKLNPFKL 303

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG   + PRW ++ K+A ++A TR+ +I + +GRTG LTP+A++ PV + G  ++ A
Sbjct: 304 QEQLGFTQKFPRWAVALKYAAEEAPTRVENISVNVGRTGALTPLAQMRPVQLAGTTVSRA 363

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           DIR+GD V+V++AGE+IP+VV ++   R  D  PF  P
Sbjct: 364 TLHNSDRILQL-----------DIRIGDTVIVRKAGEIIPEVVRVLTELRPDDTVPFIMP 412

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C   VVR+         A  RC    +C+A     ++H+VSRDA +I+G+G++ +
Sbjct: 413 THCPVCGQPVVRESGE------AVTRCVNA-SCAAILRGEIEHWVSRDALDIKGMGEKLV 465

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       +   AD++ L   +  +  ++         S   L D+I + +N    
Sbjct: 466 HQLVDRH----LVNSVADLYDLTTERLCALERMGQ------KSAQKLIDAIAQSKNQPWS 515

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRHVG+  A+ L + Y + +  A    + IA           +  +G  IAQ+
Sbjct: 516 RVLYGLGIRHVGSVNAQLLTQKYPTVEELATAKQSDIAG----------IYGIGAEIAQS 565

Query: 612 IVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           + ++++   N   +E L  E     +        +V+  +  K  V TGTL  + R +A+
Sbjct: 566 VYQWFRIDANHVLIERLKAEGLQLAATEETTTAADVNQNLAGKTFVITGTLPSLSRDEAK 625

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + + G  V+  +S+KTD ++VG++ GSKLEKAQ LG+  ++E   L +L
Sbjct: 626 ALIQKAGGKVTNSVSKKTDYLLVGEDAGSKLEKAQALGITQLSEALLLEML 676


>gi|312793814|ref|YP_004026737.1| DNA ligase, nad-dependent [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180954|gb|ADQ41124.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 673

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/704 (34%), Positives = 385/704 (54%), Gaps = 49/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+       + +   + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDI--SIVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  +    E   +   
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWC-EKEIETHA 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   
Sbjct: 236 EALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVA 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN
Sbjct: 296 GATAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP
Sbjct: 356 MDYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C + V++  +        A+RCTG + C A+    + HFVSRDA +I G+G+  +   F
Sbjct: 405 VCGADVIKFEDE------VAYRCTG-VECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLF 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+ PADI+ L+     +  +      FG  S  NL  +I   +N  L+R I+
Sbjct: 458 ER----GLIKTPADIYYLKFEDLVNLER------FGVKSTNNLLKAIQASKNRPLDRLIY 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIRH+G + A++LA++  S  +      +           L+ +P  G+ +A+++V F
Sbjct: 508 ALGIRHIGQKAAKTLAEHISSIDDLFTITED----------QLLSLPDFGEKMAKSVVTF 557

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++  +    +E L      ++   +   S  ++    V TG L K  R++A+E +  LGA
Sbjct: 558 FRQEQTRHLIERLKAAGVNTVSEKKAK-SDILKGYTFVLTGALSKYSRNEAKEILESLGA 616

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 617 KVTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660


>gi|323490410|ref|ZP_08095622.1| DNA ligase [Planococcus donghaensis MPA1U2]
 gi|323395909|gb|EGA88743.1| DNA ligase [Planococcus donghaensis MPA1U2]
          Length = 668

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/715 (33%), Positives = 389/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +A + +  L + +  +   YY   KP + D+ YD L      +   +PDL     P
Sbjct: 1   MDRLKAEQRVDELNEMLRNYGHAYYVLDKPAVPDAIYDQLLNELIDLETLYPDLVF---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    ++ KVTH  P LSL  ++  EDLR+F  R+         + + +  E
Sbjct: 58  DSPTQRVGGAPLSTVDKVTHERPMLSLSNVFGEEDLREFDKRVR----SGAGDKVDYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GKFV  A RGDG  GED++  +R I  IP  L   +   +EVRGEV
Sbjct: 114 LKIDGLAVSLLYEDGKFVKGATRGDGRVGEDITVNLRTIRAIPLKLKDAV--TLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  F ALN++    G + +ANPRNAA+G LR+L+P     R L+ F++G+G   E +
Sbjct: 172 FMPKKSFHALNEQRSEQGEELFANPRNAAAGSLRQLDPKIAASRNLDVFIYGIGGDGETY 231

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   +   +   +++Y  +    R+ LPY+IDG+V KV++F
Sbjct: 232 RLAEHDESLDYLAKLGFKTNQERQVCTSVEEVLAYIEKWTEKRNDLPYEIDGIVIKVNQF 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG  A+SP+W  ++KF  ++  T + DI++ +GRTG++TP A L+PV++ G  + 
Sbjct: 292 LYQQELGFTAKSPKWATAYKFPAEEVMTTVRDIELSVGRTGVVTPTAILDPVSVAGTTVQ 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED IK            +DIR+GD+V++++AG++IP+VV +I+++R  +  PF 
Sbjct: 352 RASLHNEDLIK-----------EKDIRIGDKVIIRKAGDIIPEVVSVILDQRTGEELPFE 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACDSELVRIEGE------VALRCVNP-QCPAQITEGLIHFVSRNAMNIDGLGEK 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++  ++       +   +DI+ L + Q     ++       D S +NL  +I+  R+ S
Sbjct: 454 VIEQLYRE----GLVHDISDIYKLTKEQLVELDRMA------DKSASNLVAAIDASRSNS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E+ +F LGIRHVG   AR L++++ + +         +          I V  +GD +A
Sbjct: 504 MEKLLFGLGIRHVGERGARILSEHFGTLEQLIAATKEEL----------IEVHEIGDKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            +IV ++ N      VE L +              +  ++    KK+V TG L+++ R +
Sbjct: 554 DSIVMYFDNEEVRALVERLREANVNLSYTGTRVRVEEGANAFAGKKIVLTGKLEQMTRQE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A   +  LG  ++  +S+KTD++I G+  GSKL+KA++L V+I +EE+ +  L +
Sbjct: 614 ASAQIEALGGKLTGSVSKKTDLLIAGEEAGSKLDKARELKVEIWDEERLVEELNK 668


>gi|227515527|ref|ZP_03945576.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931]
 gi|227086140|gb|EEI21452.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931]
          Length = 679

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/726 (33%), Positives = 392/726 (53%), Gaps = 51/726 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++   +  L+ +QA+ EL+ L +++      YY+   P + D  YD   +R   I  
Sbjct: 1   MSKQEA--VSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDL     P+ P  ++GG     L KV H IP LS+  +++  +L  F  R       
Sbjct: 59  RFPDLVV---PDSPTQRVGGAAESQLNKVIHEIPMLSMGDVFSPAELADFNRRQQDNSDV 115

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K D    + LE KIDG  +++ YE G+ V  + RG+G  GEDV+  ++ I +IP+VL   
Sbjct: 116 KVD--FDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPE- 172

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  +E RGE Y+ K  F+ LN+   A G+  +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 173 -PLSLEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTF 231

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +     +    Q + L+KMR LGF VN   R  ++   + +Y  E    R  LPY I
Sbjct: 232 MYYVPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGI 291

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++ + Q  LG   + PRW I++KF  ++ +T + DI+  +GRTG +TP A ++
Sbjct: 292 DGIVEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMD 351

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY+             +DIR+GD VL+ +AG++IP++  +I+ 
Sbjct: 352 PVQLAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIE 400

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D++P+  P+ CP C + +V   +        A RC   + C AQ  E L HF SR+
Sbjct: 401 KRPADSKPYEVPTTCPECGADLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRN 453

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +        ++  AD++ L+  Q  +  K      FG+ S++NL 
Sbjct: 454 AMNIDGLGPKIIEQLWDKGM----VKDVADLYRLEAAQLLTLPK------FGEKSISNLL 503

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R+ S ER +F LGIRHVGA++A+ LA  + S           I+          
Sbjct: 504 TAIANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKSVDALMAADAATISA--------- 554

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTG 656
            V  +G II  A+  ++QN +    +  L +                S+E   K++V TG
Sbjct: 555 -VDSIGPIIGDAVATYFQNEQVHQLIAELKEVGVNMDYLAPTTSATESAEWAGKRVVLTG 613

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L K+ R +AQE+++  GA V+  +S+KTD++I G+  GSKLEKAQ LG+++ +E++F  
Sbjct: 614 KLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFDQ 673

Query: 717 LLQQYN 722
            +++ N
Sbjct: 674 AMKEEN 679


>gi|226941791|ref|YP_002796865.1| DnlJ [Laribacter hongkongensis HLHK9]
 gi|254781355|sp|C1D4R5|DNLJ_LARHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226716718|gb|ACO75856.1| DnlJ [Laribacter hongkongensis HLHK9]
          Length = 692

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/724 (33%), Positives = 383/724 (52%), Gaps = 67/724 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++        + L   +  ++  YY    P + D+EYD L R  +A+  A P+LA     
Sbjct: 1   MTDLNPTARAAGLRALLHRYNHEYYVLDAPSVPDAEYDRLFRELEALEAAHPELA---SA 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKK 121
           + P  ++GG    +   VTH +P LSL  +++            +L  F  R+       
Sbjct: 58  DSPTRRVGGAPLAAFASVTHRLPMLSLNNVFSDMQDSDPAGRHAELAAFDQRVRDGLGL- 116

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
             + + + +EPK DG  +++ YE G  V  A RGDG +GE+V+  +R + +IP  L    
Sbjct: 117 --DEVEYAVEPKFDGLAVSLVYEHGVLVQGATRGDGETGENVTENLRTVRSIPLRLENAP 174

Query: 181 ---------IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT- 230
                    +P  +EVRGEV + K DF  LN E  A G K +ANPRNAA+G LR+L+   
Sbjct: 175 GDDLFAPAVVPARLEVRGEVLMLKRDFERLNSEQDAAGLKRFANPRNAAAGSLRQLDSRI 234

Query: 231 DITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
             +R L FF + + +   +         +  +  LG PV+          G+   Y  M 
Sbjct: 235 TASRRLTFFAYAVAEADGVSLPATHSATMDWLAGLGLPVSRQRSVVRGLAGLTGAYEAML 294

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
           + R+ LP+DIDG+VYKV+  S Q +LG  +R+PR+ ++HKF  ++A T + DI +Q+GRT
Sbjct: 295 AQRAGLPFDIDGVVYKVNRLSEQARLGFVSRAPRFAVAHKFPAEEALTVVEDITVQVGRT 354

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVARL+PV +GG  +TNATLHNED ++            +D+ VGD V+V+RAG+V
Sbjct: 355 GAITPVARLQPVFVGGVTVTNATLHNEDEVRR-----------KDVHVGDTVIVRRAGDV 403

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IP+VV ++   R P A+ F  P  CP+C S +VR+ +       A  RC+GGL CSAQ  
Sbjct: 404 IPEVVSVLAERRPPQARAFEMPLVCPVCGSHIVREADE------AVARCSGGLYCSAQHK 457

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
           + L+HF SR A ++EGLG++ +D        A  +  PAD+F L +       ++     
Sbjct: 458 QALQHFASRKALDVEGLGEKLVDQLVD----AGLVHTPADLFALDQPALARLERM----- 508

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
            GD S  NL  +++  R+ +L RF+++LGIR+VG   AR LA+++ +         +++ 
Sbjct: 509 -GDKSAENLVRALDACRHTTLARFVYALGIRNVGEATARDLARHFGTLDALMAADQDML- 566

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEI 647
                    +  P VG I+A++IV+F+    N   V+ALL      P +        + +
Sbjct: 567 ---------MTAPDVGPIVARSIVDFFAEAHNREVVDALLAAGVSWPVVETVTSAGVAGV 617

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K  V TGTL  + R  A+  +   G  V+  +S+KT  ++ G+  GSKL+KA +LG+ 
Sbjct: 618 SGKTFVLTGTLPTLGRDDAKARIEAAGGKVTGSVSKKTHYVVAGEAAGSKLDKAHELGIT 677

Query: 708 IMNE 711
           +++E
Sbjct: 678 VLDE 681


>gi|52313150|emb|CAH55605.1| DNA ligase (NAD dependent) [Bacillus amyloliquefaciens FZB42]
          Length = 668

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/715 (34%), Positives = 402/715 (56%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+     L + I  +   YY   +P + DSEYD L +   AI    P+L     P
Sbjct: 1   MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  S  KV H  P LSL   +N +DLR       R  ++   + + + +E
Sbjct: 58  DSPTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRD----FDRRVRQAVGDGVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  N+   IEVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNL--SIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 YMPKQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   ++  T   ++    E+++ R+ LPY+IDG+V KVD   
Sbjct: 232 VETQSQGLDFLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 292 QQEELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV++++ +R  + + F+ 
Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTGCPECESELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L + Q     ++      G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFREH----LVRNVADLYKLTKEQVIRLERM------GEKSTDNLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  Q     +          + V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKQVTEEEL----------LAVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           A++ +++    +  +  L +    ++ +  K V +E        K +V TG L+++ R++
Sbjct: 554 AVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+KTD++I G+  GSKL KAQ+L +++ NE Q L  L++
Sbjct: 614 AKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEAQLLGELKK 668


>gi|302871618|ref|YP_003840254.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47]
 gi|302574477|gb|ADL42268.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47]
          Length = 673

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/704 (34%), Positives = 385/704 (54%), Gaps = 49/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVL---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+       D +   + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTLDFD---YVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  ++   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLRLKEDV--SIVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  +    +   +   
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKEL-ETHA 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ +R LGF V+                 +++  R  LP++IDG V K+++  L+   
Sbjct: 236 EALEFLRHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVA 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           GE A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN
Sbjct: 296 GETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP
Sbjct: 356 MDYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQEKIFEMPKKCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C + V++  +        A+RCTG + C A+    + HFVSRDA +I G+G+  +   F
Sbjct: 405 VCGADVIKFEDE------VAYRCTG-VECPAKSYRLILHFVSRDAMDIAGMGEMIVKTLF 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+ PADI+ L+     +  +      FG  S  NL  +I   +N  L+R I+
Sbjct: 458 ER----GLIKTPADIYYLKFEDLVNLER------FGVKSTNNLLKAIQASKNRPLDRLIY 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIRH+G + A++LA++  S  +                  L+ +P  G+ +A+++V F
Sbjct: 508 ALGIRHIGQKAAKTLAEHISSIDDLFTITEE----------QLLSLPDFGEKMAKSVVTF 557

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++  +    +E L      ++   +   S  ++    V TG L K  R++A+E +  LGA
Sbjct: 558 FKQEQTRHLIERLKAAGVNTVSEKKAK-SDILKGYTFVLTGALSKYSRNEAKEILESLGA 616

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 617 KVTESVSKKTTAVIVGQDPGSKYTKAQQLGVKILNEEDFERLVK 660


>gi|294649516|ref|ZP_06726937.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824577|gb|EFF83359.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
           19194]
          Length = 675

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/710 (36%), Positives = 380/710 (53%), Gaps = 47/710 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +++ P    NK+
Sbjct: 8   EQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTP---TNKV 64

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG+       VTH +P LSL  ++N E+L  F  RI        +  + + +E K+DG  
Sbjct: 65  GGQALSKFESVTHVVPMLSLGNVFNQEELFAFARRIDERLP---NQKVQYEVELKLDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISK 195
           I++ YE G  V    RGDG +GED++  ++ I  +P+VLS     IP+++EVRGEV + K
Sbjct: 122 ISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSGQSQAIPQLLEVRGEVLMPK 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF-AKG 253
             F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +         
Sbjct: 182 QGFEKLNADQAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQPHHGLAT 241

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ L  +   GF +        +   +   Y +++  R  L  +IDG+V KVD+   Q+
Sbjct: 242 MHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQQERPDLNVEIDGMVVKVDDLKQQQ 301

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +R PRW  ++KF  + A T++ +ID Q+GRTG LTPVARL PV +GG  ++N TL
Sbjct: 302 QLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGVTVSNVTL 361

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+    P+ 
Sbjct: 362 HNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWAEFRPTDAEIVHLPTN 410

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++ 
Sbjct: 411 CPVCDSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVES 464

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     ++  ADI+ L   +     K+  I   G+ SV NL D+I   +  +L RF
Sbjct: 465 LL----HLDLLKDVADIYHLHTHR----EKLLTIEKMGEKSVQNLIDAIEASKKTTLARF 516

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIR VG   AR LA  + +            A    D  SL + P VGDI A+ I 
Sbjct: 517 IYGLGIRGVGETTARMLANTFQTLD----------ALKAADVESLKKTPDVGDITAEWIA 566

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +F+Q P NI  ++ L                  +  +  V TGTL+ + R +A + +  L
Sbjct: 567 DFFQAPHNIEVLDRL-MAAGIHWDAPTAPTRQPLNGESWVVTGTLESMGRDEATQRLQAL 625

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           GA VS  +S KT  ++ G+  GSKLEKAQ+L +++MNE++FL  L QY T
Sbjct: 626 GARVSGSVSSKTKCVVAGEKAGSKLEKAQKLEIRVMNEQEFLDFLAQYQT 675


>gi|326387612|ref|ZP_08209218.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207658|gb|EGD58469.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 687

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/716 (39%), Positives = 413/716 (57%), Gaps = 33/716 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+A++   A  EL  L ++I+YHD  Y+    P I D+EYDAL RR   I  AFP L R+
Sbjct: 3   IDAMTEADAANELMRLARQIAYHDRLYHTLDTPEIADAEYDALVRRNAEIEAAFPHLIRA 62

Query: 69  EDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              + P  K+G ++  S L KVTH +  +SL+  +  E++ +F  R+ RF     +  + 
Sbjct: 63  ---DSPSRKVGHDVAASPLSKVTHEVRMMSLDNAFTDEEVEEFAARVRRFLALPAEAEVA 119

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            T E KIDG   ++RYE G+ V AA RGDG  GEDV+A +  IP IP+ LS ++PE+ E+
Sbjct: 120 MTAEDKIDGLSCSLRYEHGRLVRAATRGDGQVGEDVTANVAFIPDIPQHLSGDVPEVFEI 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY++K DF ALN      G K +ANPRNAA+G LR+ + +   +R L F  HG G  
Sbjct: 180 RGEVYMAKADFAALNVAQEEKGEKRFANPRNAAAGSLRQKDASVTASRPLRFLAHGWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S + A+ QY+++Q +   G PV+  + +  T   ++++Y  +++ R  LPYDIDG+VYKV
Sbjct: 240 SGLPAQTQYDVMQVIAGWGVPVSPLLVRCATTADMLAHYRAIQAQRPDLPYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q++LG  A++PRW ++HKF  ++A T +  ID+Q+GRTG LTPV RL PV +GG 
Sbjct: 300 DRLDWQERLGFVAKAPRWGMAHKFPAERAETVVEAIDVQVGRTGKLTPVGRLRPVLVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +TN TLHN D I  L            +RVGDRV+++RAG+VIP+VVD +   R    +
Sbjct: 360 TVTNVTLHNRDEIARL-----------GVRVGDRVVLQRAGDVIPQVVDNLT--REEARE 406

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP C S  V +            RCTGGL C AQ+ ERLKHFVSR A +I+GL
Sbjct: 407 AYVFPDHCPECGSEAVAEEGE------VDVRCTGGLICPAQRTERLKHFVSRAALDIDGL 460

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +  FF        +  PADIF L+ R+     +     G+ D SV NL  +I  RR
Sbjct: 461 GEKTIVEFF----ALGWLESPADIFRLKNRRADILGR----EGWKDKSVENLLMAIEARR 512

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                R +F+LGIRHVG   AR L K +++  +         A + D    L+ +  VG 
Sbjct: 513 APDAARLLFALGIRHVGQVTARDLMKRFVTLPDLRAVAERAHAGDEDARAELLGIDGVGP 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++ +A+ EF+  P N    + LL E+SP     E    S +  K +VFTG L+ + R +A
Sbjct: 573 VVVEALGEFFHEPHNRAVWDDLLSELSPPPYIVETRA-SVVAGKTVVFTGKLETMSRDEA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +     LGA  +  +S KTD+++ G   GSKL++A  LG+++++E  +  +++   
Sbjct: 632 KAQAEALGARAAGSVSAKTDLVVAGPGAGSKLKQAAALGIEVIDEAAWAEIVRNAG 687


>gi|194016164|ref|ZP_03054779.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061]
 gi|194012519|gb|EDW22086.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061]
          Length = 668

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 395/715 (55%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++ +  L Q ++ ++  Y+   +P + D+EYDA  R   ++    PDL  +   
Sbjct: 1   MDKEAAKRRIEELHQILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KV H  P LSL   +N +DL  F  R+ +       + I + +E
Sbjct: 58  DSPSQRVGGAVLDAFQKVRHGTPMLSLGNAFNEQDLLDFDRRVRQAVG----DDIAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I +IP  L +  P  IEVRGE 
Sbjct: 114 LKIDGLAVSLRYENGLFVRGATRGDGTTGEDITENLKTIRSIP--LKIKRPLSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  F ALN++ +    +P+ANPRNAA+G LR+L+      R L+ FV+ + +  EI 
Sbjct: 172 FMPKPSFEALNEKRLQNEEEPFANPRNAAAGSLRQLDTKIAAKRNLDIFVYSIAELDEIG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q E L  +  LGF  N   R   T   ++     +K+ R+   Y+IDG+V KVD  +
Sbjct: 232 VESQSEGLDLLDELGFKTNKERRMCQTIEEVIELIETLKTKRADFSYEIDGIVIKVDSLA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW +++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQEELGFTAKSPRWAVAYKFPAEEVVTKLLDIELSVGRTGVITPTAILEPVKVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV +++++R  + +PF  
Sbjct: 352 ASLHNEDLIK-----------EKDIRLFDQVIVKKAGDIIPEVVGVLIDQRTGEEKPFHM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTECPECHSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     +   +D++ L + +     ++      G+ SV NL  SI + +  SL
Sbjct: 454 ITQLFQEQ----LVSRVSDLYRLTKEELIQLERM------GEKSVDNLLRSIEQSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++       Q   +           L+ V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFGDIDQLKQATKD----------QLLEVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-----SSEIENKKLVFTGTLQKIQRHK 665
           A+V +++    +  +  L +          K V      S    K +V TG L+++ R+ 
Sbjct: 554 AVVTYFEKEEILNLLNELKELGVNMTYTGPKPVKVEESDSYFAGKTIVLTGKLEEMARND 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+KTD++I G+  GSKL KA++L ++I +E + L  L++
Sbjct: 614 AKTAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDEAKMLEELKK 668


>gi|50084060|ref|YP_045570.1| DNA ligase [Acinetobacter sp. ADP1]
 gi|81393600|sp|Q6FDW0|DNLJ_ACIAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49530036|emb|CAG67748.1| DNA ligase [Acinetobacter sp. ADP1]
          Length = 676

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/717 (35%), Positives = 379/717 (52%), Gaps = 47/717 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +       ++  L Q I+ H+  YY   +P I D+EYD L  +  A+   +P+L +++ P
Sbjct: 2   MQPADIVAQMRQLIQLIAKHNHAYYVMDQPSITDNEYDQLFHQLKALEAEYPELTQADTP 61

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
               N++GG+       VTH++P LSL  ++N EDL  F  RI        +  I + +E
Sbjct: 62  ---TNRVGGQALSKFETVTHAVPMLSLGNVFNQEDLFAFARRIEERLP---NQQIQYDVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+ L  +    P  +EVR
Sbjct: 116 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKHLQHHSVETPRFLEVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEV + K  F  LN    A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 176 GEVLMPKQGFERLNAANEAKGEKTFANPRNAAAGSLRQLDPAIAASRPLAFYAYGIAQCE 235

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   +E LQ +  LGF +       ++   +   Y +++  R  L  +IDG+V KV
Sbjct: 236 PHHGLGSMHESLQWLTQLGFEIAERQFLCSSIQEVQQCYEQIQQERPDLAVEIDGMVIKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T + +ID Q+GRTG LTPVARL+PV +GG 
Sbjct: 296 DDLKQQQQLGFLSREPRWATAYKFPAEVAMTTVENIDWQVGRTGTLTPVARLQPVFVGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGDRV V R+G+VIPKV  +    R   A+
Sbjct: 356 TVSNVTLHNIGEIHRL-----------DVRVGDRVSVYRSGDVIPKVEKVWPEFRPELAE 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 405 IVQLPEQCPVCSSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           ++  ADI+ L   +     ++  I   G+ SV NL D+I   +
Sbjct: 459 GDRWVESLL----HLDLLKDVADIYHLHEHR----EQLLTIEKMGEKSVQNLMDAIEASK 510

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + +     Q           D  +L + P VGD
Sbjct: 511 KTTLARFIYALGIRGVGETTARMLANTFQTLDALKQA----------DIEALKKTPDVGD 560

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+    NI  ++ L                  +  +  V TGTL+ + R +A
Sbjct: 561 ITAEWIYDFFLAEHNIEVLDRL-LAAGIHWDAPLAPTRQPLNGESWVVTGTLETMGRDEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            + +  LGA VS  +S KT  ++ G+  GSKL+KA++L +++MNE++FL  L QY+ 
Sbjct: 620 TQRLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLQIRVMNEQEFLAFLAQYSA 676


>gi|86138407|ref|ZP_01056981.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193]
 gi|85824932|gb|EAQ45133.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193]
          Length = 752

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/763 (39%), Positives = 440/763 (57%), Gaps = 57/763 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK+ + +    LS EQA+ E   L+ +++  D  Y+Q   P + D+ YDA KRR   +A 
Sbjct: 1   MKQIEPLDPSGLSQEQAQAEFLELQTQLAAADQAYHQNDAPFLSDAAYDAAKRRYKVLAE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFP+L         L+ +G  +     K+ H +P LSL   +   D+  F   I  +   
Sbjct: 61  AFPELKDIAT---QLDSVGAPVTSGFGKIQHVVPMLSLGNAFEDSDVADFDRSIRNYLGF 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                + FT EPKIDG  +++RYEKG  + AA RGDG +GE+V+A  R I  IP+ LS  
Sbjct: 118 GASQPLRFTAEPKIDGLSLSLRYEKGVLIQAATRGDGATGENVTANARTIADIPQQLS-G 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFF 239
            PE++EVRGEVY+S  DF ALN      G K +ANPRNAA+G LR+L+      R L FF
Sbjct: 177 APEVLEVRGEVYMSHEDFAALNARHTERGGKTFANPRNAAAGSLRQLDAEITRLRPLRFF 236

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G  S   A+ Q   ++++  LGF  N   +   +   ++++Y ++++ R+TL YDI
Sbjct: 237 AYSWGDLSAPLAQTQTGAIERLHELGFQTNPLTQTCASVAEMIAHYRQIEAQRATLGYDI 296

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD+ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL 
Sbjct: 297 DGVVYKVDDLALQGRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLT 356

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNEDYI+G D  G+ +RGG++IR+GD V V RAG+VIPKV D+ + 
Sbjct: 357 PVTVGGVVVSNATLHNEDYIRGRDNKGEEIRGGKEIRIGDWVQVYRAGDVIPKVADVDLT 416

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R+ D Q F FP  CP C S  VR+      +  A  RCTGG+ C AQ +E+LKHFVSR 
Sbjct: 417 KRNGDEQTFDFPETCPECGSPAVRE------EGDAVRRCTGGIICPAQAIEKLKHFVSRK 470

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLG +QL+ F+    P   IR P DI+TL++R     TK++N  G+GD S  NL+
Sbjct: 471 AFDIEGLGAKQLEMFYND--PDLPIRTPVDIYTLEQRDLGQFTKLKNRPGWGDQSAANLF 528

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH--------- 590
            +I ++RNISL R IF+LGIRHVG   A+ LA ++ S+++ A  ++   +          
Sbjct: 529 AAITEKRNISLGRMIFALGIRHVGEVAAKDLALHFGSWEDLASAVDAARSAALAHRAADL 588

Query: 591 ----------------------------------NNDDWLSLIRVPLVGDIIAQAIVEFY 616
                                               + W  LI +  +G  +  ++ +  
Sbjct: 589 AEDQERERASSEGRRAKIKETREAALSVLELHRTAREAWEDLIGIDGIGATVGLSLSDAL 648

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            N +    ++ L+ +++ S         S +    +VFTG L+K+ R +A+     LGA 
Sbjct: 649 ANMQERAVIDDLVAQLNISAPAAPSQ-ESPVAGLTVVFTGKLEKMTRDEAKARAESLGAK 707

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KTDI++ G   GSK +KA +LG++I++E+ +L  + 
Sbjct: 708 VSGSVSKKTDILVAGPGAGSKEKKALELGIRILDEDGWLAEIA 750


>gi|312877316|ref|ZP_07737282.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795879|gb|EFR12242.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A]
          Length = 673

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/704 (34%), Positives = 385/704 (54%), Gaps = 49/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+       + +   + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDI--SIVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  +    E   +   
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWC-EKEIETHA 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   
Sbjct: 236 EALEFLKRLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVA 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN
Sbjct: 296 GATAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP
Sbjct: 356 MDYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C + V++  +        A+RCTG + C A+    + HFVSRDA +I G+G+  +   F
Sbjct: 405 VCGADVIKFEDE------VAYRCTG-VECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLF 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+ PADI+ L+     +  +      FG  S  NL  +I   +N  L+R I+
Sbjct: 458 ER----GLIKTPADIYYLKFEDLVNLER------FGVKSTNNLLKAIQASKNRPLDRLIY 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIRH+G + A++LA++  S  +      +           L+ +P  G+ +A+++V F
Sbjct: 508 ALGIRHIGQKAAKTLAEHISSIDDLFTITED----------QLLSLPDFGEKMAKSVVTF 557

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++  +    +E L      ++   +   S  ++    V TG L K  R++A+E +  LGA
Sbjct: 558 FRQEQTRHLIERLKAAGVNTVSEKKAK-SDILKGYTFVLTGALSKYSRNEAKEILESLGA 616

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 617 KVTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660


>gi|313884866|ref|ZP_07818618.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619557|gb|EFR30994.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8]
          Length = 673

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/721 (31%), Positives = 376/721 (52%), Gaps = 57/721 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ ++++        L+++++     YY   KP   D+ YD + R+ + +    PD    
Sbjct: 4   IKEMTLDD----YQDLKEQLNQLAYAYYVLDKPQAEDAVYDQMYRQLENLEKIHPDWL-- 57

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  +IG ++     KVTH  P  SL   ++ E++  FI R+    Q +    + F
Sbjct: 58  -SPDSPTQRIGDQVLAGFEKVTHLEPLYSLANAFSEEEVVAFIDRV----QNQVSGPLTF 112

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E KIDG  I++RYE G FV  A RGDG  GE++++ +R I  +P  L    P   E R
Sbjct: 113 MCECKIDGLSISLRYEDGLFVQGATRGDGRVGENITSNLRTIKALPLRLQK--PVSGEFR 170

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN+     G  P+ANPRNAA+G LR++NP +   R LN F++G     
Sbjct: 171 GEAYMPKAVFQKLNESRDLAGLAPFANPRNAAAGGLRQINPKEAAKRQLNIFMYGAVYNE 230

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +     Q ++   ++ LG   N   R  +    I++Y  E+   R+ LPY+IDG+V KV+
Sbjct: 231 DYQIDSQAQLFDFLQELGLRTNPLRRLCHNKEEIMAYIQEVGQKRADLPYEIDGVVIKVN 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q  LG   ++PRW I++KF  +  +TRL +++  +GRTG++TP A ++PV + G  
Sbjct: 291 QVAQQSSLGYTVKAPRWAIAYKFKAQVEATRLKEVEWTVGRTGVVTPTAVMDPVFLAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN D IK L           D+R+GD+V++ +AG++IP+++++ +++R  D+ P
Sbjct: 351 VQRASLHNIDLIKAL-----------DVRIGDQVVIHKAGDIIPEIIEVNLDQRPADSTP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C   + R+          A RC   L C AQ+L ++ HF SR A NI GLG
Sbjct: 400 LVIPETCPVCYHPLEREAGE------VALRCLNPL-CPAQRLAQISHFGSRGAMNISGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +      +     I+  AD++ L          +  +    + S   L  +I   + 
Sbjct: 453 EKVVAALLDHDM----IQNVADLYHLT------LADLLKLPNTKEKSAQKLLQAIEASKT 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLER +F  GIRHVGA+ AR +A+ + + +  +Q     I            +  +G I
Sbjct: 503 NSLERLLFGFGIRHVGAKAARLVAQKFDTIEALSQASEEEI----------TNIDGIGTI 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQ 662
           IA+++V+F Q+  +   ++ L            K   + ++N     K +V TGT+    
Sbjct: 553 IAKSLVDFLQDEASHALIQDLTNMGVNMTYTGPKVNQTSLDNDFWLDKTVVLTGTMASYS 612

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A+E +  LGA V   +S+ TD ++ G + GSKL KA+QLGV I++E +FL  + + +
Sbjct: 613 RSQAKEILQGLGAKVIGSVSKNTDYLVAGQDAGSKLSKAEQLGVTILDESEFLAQINEES 672

Query: 723 T 723
            
Sbjct: 673 E 673


>gi|327399096|ref|YP_004339965.1| DNA ligase [Hippea maritima DSM 10411]
 gi|327181725|gb|AEA33906.1| DNA ligase [Hippea maritima DSM 10411]
          Length = 667

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/712 (34%), Positives = 403/712 (56%), Gaps = 50/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +A++ +  L +++ YH+  YY    PII DSEYD + +    +  ++P      D 
Sbjct: 1   MNDREAKERIEQLRKKLHYHNYRYYVLDDPIISDSEYDMMLKELKELEESYPQF---YDE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG       KV H IP LSLE  ++  D+R+F  ++ RF +  +D  I +++E
Sbjct: 58  NSPTVRVGGAPLNKFEKVEHKIPMLSLEDGFDDNDIREFDRKVKRFLKLPEDKKIAYSVE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGE 190
           PK DG  I + YE GK   A+ RGDG+ GE+V+  I+ I  +P VL ++ P +  +V+GE
Sbjct: 118 PKFDGLSIDLIYENGKLTVASTRGDGYVGENVTQNIKTIRNVPLVLPIDTPPMYLDVQGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           V ++K +F  +N E +  G   +ANPRNAA+G +R+L+P +   R L   ++ + +    
Sbjct: 178 VLLTKEEFERINQERLKNGLNVFANPRNAAAGSVRQLDPKETAKRNLIMIMYYIRQIEGY 237

Query: 250 FAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             K   Q++ L+ ++ +GFP ++  R        + Y  E++  R TLPY++DG+V KVD
Sbjct: 238 KRKILSQHDALEALKEMGFPTSSLNRLVVGIEEAIEYKKELEIKRETLPYELDGIVIKVD 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F LQ+ LG   +SPRW I+ KF  +QA+T++ DI++ +GRTGILTPVA LEPVNIGG +
Sbjct: 298 DFELQESLGATTKSPRWAIAFKFPAQQATTKIKDIEVNVGRTGILTPVAILEPVNIGGVV 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LH  D I+            +DIR+GD V V+RAG+VIP+VV  + + R    + 
Sbjct: 358 VSRASLHTMDEIEK-----------KDIRIGDVVFVQRAGDVIPEVVKPVKDLRDGSEKK 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP+C SRVV+D         A +RC+  + C     E +KHFVSR A NI+G G
Sbjct: 407 FVMPEKCPVCGSRVVKD--------GAYYRCSN-INCPKVLKESIKHFVSRKAMNIDGFG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++           ++  ADI+ L +       +       G+    NL  SI + + 
Sbjct: 458 DKLIEQLVDK----GIVKNIADIYELDKETLMGLDR------VGEKLAENLISSIQRSKG 507

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +  +FI++LGIRHVG  +A+ LA+ + + +N  +   + +          + +  +G+ 
Sbjct: 508 TTFAKFIYALGIRHVGEFVAKLLAERFKNLENLKKATKDEL----------LAIDGIGEE 557

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA ++V F+  P+N+  ++ LL        + +++  S I  K  VFTGTL K  R   +
Sbjct: 558 IADSVVSFFSEPKNLQTIDKLLYYGIHFEDKTKEH--SRIAGKSFVFTGTLSKP-REYFK 614

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E + + G +V   +S+  D ++VG+NPGSKL+KA+Q GV +++EE+   LL+
Sbjct: 615 ELIEERGGIVRNSVSKNLDYLVVGENPGSKLKKAKQNGVSVISEEELYRLLE 666


>gi|291569184|dbj|BAI91456.1| DNA ligase [Arthrospira platensis NIES-39]
          Length = 683

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/714 (30%), Positives = 362/714 (50%), Gaps = 49/714 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  ++L+ L   +      YY    PI+ D  YD L R    + + +P+L     P+ P 
Sbjct: 11  EISQKLAQLRLTVQRASYAYYVLDDPIMEDGVYDRLYRELQELENQYPELI---SPDSPT 67

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +       VTH+IP  SLE  +N+ +L+ +  +  RF          +  E KID
Sbjct: 68  QRVGEKPAAQFQSVTHNIPLYSLENAFNMAELQAWDEKWRRFLGDSLPQDPKYICELKID 127

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           G+ I + Y  G  V    RGDG +GED++  ++ I +IP  L L N P ++EVRGE ++S
Sbjct: 128 GSAIALTYHNGILVRGVTRGDGVTGEDITQNVKTIRSIPLKLHLDNPPPVVEVRGEAFLS 187

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
            + F+ +N E    G   +ANPRNAA+G LR+L+P  +  R L+FF + L   S      
Sbjct: 188 NHIFVQINQERQQTGEPLFANPRNAAAGTLRQLDPRIVADRRLDFFAYTLHLDSPNLHD- 246

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ L+ ++ +GF VN   +   +   +  Y++   + R  LPY  DG+V K++  SLQK
Sbjct: 247 HWDCLELLQKMGFKVNPNRQLCQSLLEVQQYFDAWDTQRRELPYMTDGVVVKLNSLSLQK 306

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLGE  + PRW I+ K+  ++  T+++ +  Q+GRTG LTPVA LEP+ + G  +  ATL
Sbjct: 307 QLGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTVKRATL 366

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D +  L           D+ +GD V+V++AGE+IP+VV ++ + R   A+  + P+ 
Sbjct: 367 HNQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMPTH 415

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   V++          A  RC    +C A     + H+  R A +I G+G++ +  
Sbjct: 416 CPECGETVIKTPAE------AVTRCINS-SCPAIVRGSIIHWCQRPALDINGIGEKLVQQ 468

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              ++     +R  AD++ L   Q         +   G+ S   +  +I   +     R 
Sbjct: 469 LVDAQ----LVRSVADLYDLNMDQLL------ELDRMGEKSAQKILAAIATSKQQPWHRV 518

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LGIRHVG   A+ LA+ + S Q+ A   +  I            V  +G  IA ++ 
Sbjct: 519 LYGLGIRHVGKANAQLLAQNFPSCQSLAAASSAQIEG----------VYGIGAEIATSVY 568

Query: 614 EFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +++QNP NI   + L +        PS      + +     K  V TGTL  + R +A+ 
Sbjct: 569 QWFQNPANISLCDRLQQAGLQLTSVPSTAPKSTHQAQPFAGKTFVLTGTLPTLSRDQAKS 628

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +   G  V+  +++K D +++G+ PGSKL+KAQ L +  ++E  FL +++  N
Sbjct: 629 MIENAGGKVTNSVTKKVDYLLLGEKPGSKLKKAQDLAIANLSESDFLAMIKSAN 682


>gi|91204173|emb|CAJ71826.1| strongly similar to DNA ligase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 674

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/710 (34%), Positives = 380/710 (53%), Gaps = 49/710 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L   I YHD  YY  + P I D EYD L R    +  A P+L     P+ P  
Sbjct: 5   VKEKIEQLRCIIRYHDYKYYVENNPEISDYEYDQLLRELQNLESAHPELI---TPDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++  +       V H  P LS++  ++ E+L++F  RI R      + +I + +E KIDG
Sbjct: 62  RVADQPISQFPTVEHKKPMLSIDNTYSNEELKEFDQRIKRMAGIDANTNIEYVVELKIDG 121

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-----LNIPEIIEVRGEV 191
             IT+ YE G FV  A RGDG  G+DV+A ++ I  IP  LS       IP ++E+RGE+
Sbjct: 122 IAITLWYENGLFVRGATRGDGFRGDDVTANLKTIRQIPLKLSVSGAHYKIPPVVEIRGEI 181

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+   +F  +N+E    G   +ANPRNAA+G L+ L+P     R L  F + +G    + 
Sbjct: 182 YLPNKEFQRINEEREEKGEIQFANPRNAAAGSLKLLDPRITAKRRLKMFAYVIGYVEGME 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L  ++ +G PVN+  +       +V Y NE    R  L Y +DG+V KV+  +
Sbjct: 242 LESHVQCLDFIKAIGLPVNSYAQLCKNIDEVVRYCNEWDKRRGILDYMVDGMVIKVNSLA 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  +++PRWMIS KF  +QA TR+ +I +Q+G+TG LTPVA L PV + G  ++ 
Sbjct: 302 LQEQLGATSKAPRWMISFKFQPEQAITRIEEIVVQVGKTGTLTPVANLAPVLLAGTTVSR 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D +K            +D+RVGD V+V++AGE+IP+VV ++  +R    + F  
Sbjct: 362 ASLHNFDEVKR-----------KDVRVGDYVVVQKAGEIIPQVVKVLEEKRSGREKVFVE 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C+  V RD +          RC   L C AQ   R+++F  RDA +IEGLG   
Sbjct: 411 PACCPVCKGPVHRDNSE------VYLRCHNPL-CKAQTKRRIQYFAGRDAMDIEGLGPAI 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           +   +DIF+LQ     +  ++      G  S +NL  +I   R   L
Sbjct: 464 IEQLVDK----GLVDDYSDIFSLQYDDLVNLERM------GKKSSSNLISAIENSRGRDL 513

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R I +LGI +VG   A  L++++ S         + +           ++  +G ++AQ
Sbjct: 514 DRLICALGIHNVGLHTAEVLSEHFDSLGKLLNATADELK----------KIHEIGPVVAQ 563

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +IVEF+QN      ++ L+ +   +          SS++  K  V TG LQK  R  A++
Sbjct: 564 SIVEFFQNKHTREIIKKLVAKGVNTEKLTSDIPRKSSKVAGKSFVITGKLQKYSRSDAEK 623

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + +LG  VS+ +S KT+ +I G++PGSKL KA++LGV I++EE F  L+
Sbjct: 624 LIKRLGGRVSSAVSGKTNYLIAGEDPGSKLGKAKELGVVILDEEAFDLLV 673


>gi|257065343|ref|YP_003145015.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476]
 gi|256792996|gb|ACV23666.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476]
          Length = 708

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/728 (31%), Positives = 373/728 (51%), Gaps = 55/728 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A ++   +  + +L +EI +H   YY    P I D+ +D+L R    +  A P      D
Sbjct: 13  AATVSDVKARIDALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELRELELANPQYI---D 69

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P  P  ++GG +      V H++   SL+    +++L +++ R          + + F  
Sbjct: 70  PTSPTQRVGGYVGEQFSPVRHAVRMYSLDNAMGLDELDEWLARTLEAIG----HPVQFCC 125

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-------PE 183
           E KIDG+ I + YE G    AA RGDG +GEDV+  +R +  IP  L  +          
Sbjct: 126 ELKIDGSSIALTYEAGVLTKAATRGDGTTGEDVTVNMRTVRDIPLRLRDDGMAGLRDSDA 185

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
            IEVRGEVY+ K+ F  LN    A G++ +ANPRNAA+G LR+ +P     R L  F++ 
Sbjct: 186 SIEVRGEVYMPKSSFEKLNAAAEATGKQGFANPRNAAAGSLRQKDPKITQNRDLATFLYA 245

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +   + I A+ Q ++L+ +R  GF VN  V+  +T   +  +  ++   R +LPY IDG+
Sbjct: 246 IADDAPIRAESQNDLLEWLRDCGFHVNPDVKLCDTPQEVHDFCEQVAEKRDSLPYGIDGV 305

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV++F+ Q+ +G  AR+PRW I++KF  ++ +T + DI +Q+GRTG  TPVA L+PV 
Sbjct: 306 VVKVNDFATQRDMGFTARAPRWAIAYKFPPEEKTTVMHDITVQVGRTGACTPVAELDPVL 365

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ +  ATLHN D ++            +D+R+GD V+V++AG+VIP+++  +++ R 
Sbjct: 366 VDGSTVARATLHNLDEVRR-----------KDVRIGDTVIVRKAGDVIPEILGPVLSLRP 414

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             A+P+  P+ CP C S +VR+         AA RC   + C AQ +ERL H+ SR A +
Sbjct: 415 EGAKPWEMPATCPSCGSPLVREEGE------AAFRCV-SIDCPAQAMERLIHWASRGAMD 467

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-----KIENILGFGDVSVTN 537
           I+G+G + +    +S      +   AD + L      +       K    +  G      
Sbjct: 468 IDGMGDEIVARLVESGR----VLDVADYYNLTEYDLATLETGRINKEGEPIHLGGTIAAK 523

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  S+   ++ +  R +F LGIRHVG     ++A  Y S +         +A        
Sbjct: 524 LMASLEASKSRTFARVLFGLGIRHVGKTTGEAIAAAYPSMEKLMNATEEGLA-------- 575

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTG 656
             +V  +G +IA++IV F     N   +  L +          E ++   +     V TG
Sbjct: 576 --QVDGIGAVIAKSIVTFLATEDNREVIHRLERAGVTMADEVKESDIPQTLAGITFVLTG 633

Query: 657 TL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           +L    + R +A + +  +GA VS  +S+KT  ++ G+  GSK +KA QLGV ++ E +F
Sbjct: 634 SLTESGMTRTEAGDRLKAMGAKVSGSVSKKTGYVVAGEAAGSKYDKAVQLGVPVLTEAEF 693

Query: 715 LFLLQQYN 722
           L LL+  +
Sbjct: 694 LRLLEAGS 701


>gi|146296740|ref|YP_001180511.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166215569|sp|A4XK85|DNLJ_CALS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145410316|gb|ABP67320.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 673

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/703 (34%), Positives = 386/703 (54%), Gaps = 49/703 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYIF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  +++  +L  F  R+       D N   + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFSEGELYDFDRRLRELLGTDDFN---YVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLKLKDDI--NIVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  +    +   K   
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNVQWCEKEL-KTHD 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ ++ LGF V+      +          +++  R  LP++IDG V K+++ +L+   
Sbjct: 236 EALRYLKYLGFKVSPDYVVCSNIKEAYEAIKKVEEKRGLLPFEIDGAVVKLNQLALRDVA 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW +++KF  ++  T+L+DI++ +GRTGILTP A LEPV I G++++ ATLHN
Sbjct: 296 GSTAKSPRWAVAYKFPPEKKETKLIDIEVNVGRTGILTPTAVLEPVRISGSVVSRATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R  + + F  P  CP
Sbjct: 356 MDYIR-----------QKDIRIGDTVVVQKAAEIIPEVVEVVFSKRTGNERIFEMPKKCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C + V++  +        A+RCTG + C A+    + HFVSRDA +I G+G+  +   F
Sbjct: 405 VCGADVIKFEDE------VAYRCTG-VECPAKSYRLILHFVSRDAMDIAGMGEMIVKNLF 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+ PADI+ L+     +  +      FG  S  NL  +I   +   L+R IF
Sbjct: 458 ER----GLIKTPADIYDLKFDDLVNLER------FGVKSTNNLLKAIEASKKRPLDRLIF 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIRH+G + A++LA++  S  +        +          +++P  G+ +A+++V F
Sbjct: 508 ALGIRHIGQKAAKTLAEHISSIDDLFTITEEEL----------LKLPDFGEKMAKSVVTF 557

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++  +    +E L K    ++   +   S  ++    V TG L K  R +A+E +  LGA
Sbjct: 558 FRQDQTKHLIERLKKAGVNTVAEKKAK-SDILKGYTFVLTGALSKYSRSQAKEILESLGA 616

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            VS  +S+KT  +IVG++PGSKL KAQ+L VKI+ E+ F  L+
Sbjct: 617 RVSESVSKKTTAVIVGEDPGSKLTKAQELNVKILYEQDFERLI 659


>gi|284053772|ref|ZP_06383982.1| NAD-dependent DNA ligase LigA [Arthrospira platensis str. Paraca]
          Length = 683

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/714 (30%), Positives = 360/714 (50%), Gaps = 49/714 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  ++L+ L   +      YY    PI+ D  YD L R    + + +P+L     P+ P 
Sbjct: 11  EISQKLAQLRLTVQRASYAYYVLDAPIMEDGVYDRLYRELQELENQYPELI---SPDSPT 67

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +       VTH+IP  SLE  +N+ +L+ +  +  RF          +  E KID
Sbjct: 68  QRVGEKPAAQFQSVTHNIPLYSLENAFNMAELQAWDEKWRRFLGDSLPQDPKYICELKID 127

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           G+ I + Y  G  V    RGDG +GED++  ++ I +IP  L L N P ++EVRGE ++S
Sbjct: 128 GSAIALTYHNGILVRGVTRGDGVTGEDITQNVKTIRSIPLKLHLDNPPPVVEVRGEAFLS 187

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
            + F+ +N E    G   +ANPRNAA+G LR+L+P  +  R L+FF + L   S      
Sbjct: 188 NHIFVQINQERQQTGEPLFANPRNAAAGTLRQLDPRIVADRRLDFFAYTLHLDSPNLHD- 246

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ L+ ++ +GF VN   +   +   +  Y++   + R  LPY  DG+V K++  SLQK
Sbjct: 247 HWDCLEFLQKMGFKVNPNRQLCQSLLEVQQYFDAWDTQRQQLPYMTDGVVVKLNSLSLQK 306

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLGE  + PRW I+ K+  ++  T+++ +  Q+GRTG LTPVA LEP+ + G  +  ATL
Sbjct: 307 QLGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTVKRATL 366

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D +  L           D+ +GD V+V++AGE+IP+VV ++ + R   A+  + P+ 
Sbjct: 367 HNQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMPTH 415

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   V++          A  RC    +C A     + H+  R A +I G+G++ +  
Sbjct: 416 CPECGETVIKTPAE------AVTRCINS-SCPAIVRGSIIHWCQRPALDINGIGEKLVHQ 468

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              ++     +R  AD++ L   Q         +   G+ S   +  +I   +     R 
Sbjct: 469 LVDAQ----LVRSVADLYDLNMDQLL------ELDRMGEKSAQKILAAIATSKQQPWHRV 518

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LGIRHVG   A  LA+ + S Q+ A   +  I            V  +G  IA ++ 
Sbjct: 519 LYGLGIRHVGKANADLLAQNFPSCQSLAAASSAQIEG----------VYGIGAEIATSVY 568

Query: 614 EFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +++QNP NI   + L +        PS        +     K  V TGTL  + R +A+ 
Sbjct: 569 QWFQNPANISLCDRLQQAGLQLTSVPSTAPKSTPQAQPFAGKTFVLTGTLPTLSRDQAKS 628

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +   G  V+  +++K D +++G+ PGSKL+KAQ L +  ++E  FL +++  N
Sbjct: 629 MIENAGGKVTNSVTKKVDYLLLGEKPGSKLKKAQDLAIANLSESDFLAMIKSAN 682


>gi|154248881|ref|YP_001409706.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1]
 gi|190359256|sp|A7HJG6|DNLJ_FERNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154152817|gb|ABS60049.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1]
          Length = 681

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/716 (32%), Positives = 383/716 (53%), Gaps = 49/716 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+ ++E+  L +EI YH+  YY  ++P+I D EYD L +R   +   +P+L   + P
Sbjct: 1   MVSEKIKQEVEKLRKEIEYHNYRYYVLAQPVISDEEYDKLMKRLMELEEKYPEL---KTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++      V HS P LSL+  +N  ++R F  RI +  +      + +  E
Sbjct: 58  DSPTQRVGGQLIEGFETVEHSEPMLSLDNTYNENEIRNFHERIRKVVR-----DVQYVAE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I +RYE G  V A  RGDG  G+DV+A ++ + +IP  L    P  IEVRGE+
Sbjct: 113 LKIDGVSIALRYENGLLVRAITRGDGLRGDDVTANVKTVKSIPLRLPE--PLTIEVRGEI 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++    F   N +    G  P+ANPRNA +G L  L+P+ +  R L+ F++ + K  +  
Sbjct: 171 FMPVQYFEEFNRQREEEGLLPFANPRNATAGTLHLLDPSQVAQRKLDSFMYYIVKPQQYD 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q++ L+ +  L F VN   +  ++   ++ Y+ E    R  L Y IDG+V KV++F 
Sbjct: 231 LKTQWDALKFLEKLHFKVNPHSKLLSSIEEVIDYWKEWTEKRKKLEYWIDGVVVKVNDFE 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I+ KF  +Q  T++L+I  Q+GRTG +TPVA  EPV + G+++  
Sbjct: 291 QQNELGWTAKSPRWAIAFKFPAQQVRTKVLNITFQVGRTGTITPVAEFEPVELEGSIVKR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DYIK             DIRVGD V +++AG +IP++  ++   R  D      
Sbjct: 351 ASLHNFDYIK-----------ENDIRVGDYVFIEKAGGIIPQISYVLKELRDGDEIETVP 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C   V ++          A++C     C A+    ++ FVSR A +I+GLG + 
Sbjct: 400 PEKCPECGGPVGKESGE-----YVAYKCLNP-HCPAKLKRHIEVFVSRQAMDIQGLGPKI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +         A  ++  AD++ L             I G G   ++N+   I K +   +
Sbjct: 454 ISKIVD----AGLVKDIADLYYLNIFDLA------QISGLGPKMISNILSEIEKSKQNPI 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +  LGI  VG +IA+ LAK Y S +  ++           D   L  +  +G+ IA+
Sbjct: 504 EKLLVGLGIPGVGEKIAKVLAKKYKSMEELSKA----------DIKELSEIEGIGEDIAK 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            IVE++ +P+    +E L ++   ++   E   S+ ++      TGTL+   R + + ++
Sbjct: 554 NIVEYFNSPKTKEILEKL-RKAGVNLESAETTTSNILDGLTFCVTGTLENFSREEIKRFI 612

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
             LG   +  L++KTD ++VG NPGSKLEKA++ GVK++NE++FL +L++    L+
Sbjct: 613 ESLGGHFTDNLTKKTDYLLVGTNPGSKLEKAKKFGVKVLNEQEFLEMLEKKGVELK 668


>gi|17229209|ref|NP_485757.1| NAD-dependent DNA ligase LigA [Nostoc sp. PCC 7120]
 gi|81772126|sp|Q8YW98|DNLJ_ANASP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|17135537|dbj|BAB78083.1| DNA ligase [Nostoc sp. PCC 7120]
          Length = 677

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/713 (32%), Positives = 368/713 (51%), Gaps = 55/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L + +      YY    PI+ D+ YD L R    +    P+L     P+ P  +I
Sbjct: 9   KRVEELRRLLQQASYAYYVSDAPIMEDAVYDQLYRELQQLEIQHPELV---TPDSPTQRI 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G         V H+IP  SLE  +N+E+L+ +  R  R   +       +  E KIDG+ 
Sbjct: 66  GERPATQFLSVRHNIPLYSLENAFNVEELQAWDQRWRR---QVAPTEAEYVAELKIDGSA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE---VRGEVYISK 195
           I + Y+ G  V  A RGDG +GED++  +R I +IP  L+ +  E +E   VRGE ++  
Sbjct: 123 IALTYQNGILVRGATRGDGVTGEDITQNVRTIRSIPLRLNFDGIEKVEKVEVRGEAFLPL 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL---GKTSEIFA 251
             F  +N+E    G + +ANPRNAA+G LR+L+   + R  L+FF + L   G      A
Sbjct: 183 EVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVARRRLDFFAYTLHISGMDDASIA 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q+E L+ ++ +GF VN   +   +   +  YY    + R  LPY  DG+V K++ F L
Sbjct: 243 NTQWEALELLQKMGFRVNPNHKLCQSLAEVADYYKYWDTERLNLPYMTDGVVLKLNSFKL 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG   R PRW ++ K+  ++A TR+ +I + +GRTG LTP+A++ PV + G  ++ A
Sbjct: 303 QEQLGFTQRFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAQMRPVQLAGTTVSRA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           DIR+GD V+V++AGE+IP+VV +I   R  D QPF  P
Sbjct: 363 TLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPADTQPFIMP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C   VVR+         A  RC    +C A     ++H+VSRDA +I+G+G++ +
Sbjct: 412 THCPVCGQPVVRETGE------AVTRCVNA-SCPAILKGSIEHWVSRDALDIKGVGEKLV 464

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       +   AD++ L       T ++  +   G+ S   L ++I + +N    
Sbjct: 465 YQLVDK----GLVHSVADLYDLT------TERLFALERMGEKSAQKLIEAIAQSKNQPWS 514

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRHVG+  A+ L++ Y            +   ++     +  +  +G  IAQ+
Sbjct: 515 RVLYGLGIRHVGSVNAQLLSEKYR----------AVAELSSAKQSDIEGIYGIGAEIAQS 564

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRHKAQ 667
           + ++++   N   +E L           E  V +    ++  K  V TGTL  ++R + +
Sbjct: 565 VYQWFRINANQSLIERLQAAGLKLANTEEIPVMNNGILKLNGKTFVVTGTLPTLKRDEVK 624

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + + G  V+  +S+KTD ++VG++ GSKLEKAQ LG+  + E Q L +L++
Sbjct: 625 ALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLEKAQALGIAQLTETQLLEILEE 677


>gi|330466191|ref|YP_004403934.1| DNA ligase [Verrucosispora maris AB-18-032]
 gi|328809162|gb|AEB43334.1| DNA ligase, NAD-dependent [Verrucosispora maris AB-18-032]
          Length = 717

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/717 (32%), Positives = 360/717 (50%), Gaps = 43/717 (5%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QAR+  ++L QE++ H   YY    P + D+E+D   R   A+   FP L     P+ P 
Sbjct: 31  QARERHATLSQELTEHQYRYYVLDAPTVSDAEFDRQLRELTALEEEFPAL---RTPDSPT 87

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG  +     V H+   +SL+  +  E+L  +  R+ R         + +  E K+D
Sbjct: 88  QRVGGTFSTDFTPVAHAERMMSLDNAFADEELAAWAERVER----DAGGPVPYLCELKVD 143

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-----LNIPEIIEVRGE 190
           G  I + Y+ G+ + AA RGDG +GEDV+A +R+I  +P  L+       +PE IEVRGE
Sbjct: 144 GLAINLTYQGGRLIRAATRGDGRTGEDVTANVRSIRDVPSRLTDSAEYGPVPEFIEVRGE 203

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           +Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G     
Sbjct: 204 IYFPVEAFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARKGF 263

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E    ++  G P ++  R      G+  Y     + R  + ++IDG+V KVD  
Sbjct: 264 QPSTQSESYSALKAWGLPTSDRWRVLPDLTGVRDYIAHYAAHRHDVEHEIDGVVVKVDPV 323

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            +Q +LG  +R+PRW I+ K+  ++ +T+LLDI++++GRTG +TP A LEPV + G+ + 
Sbjct: 324 PIQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRALLEPVKVAGSTVA 383

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   ++            + + +GD V++++AG+VIP+V+  +V+ R PDA+PF 
Sbjct: 384 YATLHNAREVER-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRPPDARPFV 432

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C AQ  ER+ H   R AF+IE LG +
Sbjct: 433 MPTTCPACGTPL-----APAKEGDVDIRCPNSRSCPAQLRERVFHLAGRGAFDIEALGYK 487

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                  ++     I    D+F+L   Q   +    N  G    + T L D++   R   
Sbjct: 488 SGAALLDAQI----ITDEGDLFSLDAEQLARSPFFVNKDGSLGSNATKLLDNLAVARERD 543

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   A++LA+++ S +          A +N     L  V  VG  IA
Sbjct: 544 LWRVLVALSIRHVGPTAAQALARHFRSIE----------AIDNASEEELSSVDGVGPTIA 593

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +I E++    +   V    +                +E   +V TGTL    R +A E 
Sbjct: 594 ASIREWFAVDWHREVVRKWAEAGVRMAEEAVAEGPRPLEGLTVVVTGTLSGYSRDQAAEA 653

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +   G  VS  +S+KT  ++VGDNPGSK +KA  L V I++EE F  LL       R
Sbjct: 654 IQSRGGKVSGSVSKKTGFVVVGDNPGSKADKAATLKVPILDEEGFQVLLDAGVEAAR 710


>gi|327475237|gb|AEA77213.1| DNA ligase [Bacillus aquimaris]
          Length = 668

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A K +  L   ++ ++  Y+   KP + DSEYD L R    +   FPDL  S   
Sbjct: 1   MDKQSAEKRVKELHDVLNQYNYEYHVLDKPSVPDSEYDQLLRELIELEDQFPDLKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  S  KV H  P LSL   +N EDLR F  R+ +       +   +  E
Sbjct: 58  DSPSERVGGSILESFEKVEHRTPMLSLGNAFNEEDLRDFDRRVRQSVG----DDFSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GED+++ ++ I +IP  L ++ P   EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGVFVQGATRGDGTIGEDITSNLKTIRSIP--LKISEPISFEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  F ALN        +P+ANPRNAA+G LR+L+P     R L+ F++ L    +  
Sbjct: 172 FMPKGSFEALNKVKEEKEEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYALADVGDTG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E L ++  LGF  N   R+  T   ++ +       R  LPYDIDG+V KVD   
Sbjct: 232 IESHSEGLDRLERLGFKTNQERRRCATIEEVIEFVEGWTDKRPNLPYDIDGIVIKVDALQ 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I+ KF  ++  T L DI++ IGRTG+LTP A L+PV + G  +  
Sbjct: 292 QQQQLGTTAKSPRWAIAFKFPAEEVVTVLKDIELSIGRTGVLTPTAILDPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DI++GD V++K+AG++IP+VV+++ ++R  + Q F  
Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDHVVIKKAGDIIPEVVNVLEDKRTGEEQEFKM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECDSELVRLEGE------VALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     I   AD++ L+R Q     ++      G+ SV NL ++I   +  SL
Sbjct: 454 ISQLFREK----LIEDVADLYRLEREQLLQLERM------GEKSVDNLLEAIEASKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LG+RHVGA+ A++LA+ + S +       + +            +  +G+ +A 
Sbjct: 504 EKLLFGLGVRHVGAKAAKTLAQQFHSMEKLMTVSKDEL----------TDINEIGEKMAA 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVFTGTLQKIQRHK 665
           AIV ++ N      +E L +       +  K      V S    K +V TG ++ + R++
Sbjct: 554 AIVAYFDNEEVKELIEELKEAGVNLEYKGPKPVKVSEVDSYFAGKTVVLTGKIEVLSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+KTD++I G++ GSKL KA +L +++ +E++ +  L +
Sbjct: 614 AKDKIEMLGGKVTGSVSKKTDLVIAGEDAGSKLAKANELNIEVWDEDKLMEELNR 668


>gi|323140467|ref|ZP_08075395.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067]
 gi|322415035|gb|EFY05826.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067]
          Length = 679

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/713 (35%), Positives = 384/713 (53%), Gaps = 53/713 (7%)

Query: 15  EQAR--KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           E+A    E   L +EI +++  YY    P I D+EYD +  R   +   +PD   +   +
Sbjct: 10  ERAADLAEADKLRREIRHNEYLYYVLDAPEITDAEYDRMMVRLRELEARYPDSIPA---D 66

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG  +    +V H  P LSL  +++ E+LR F  R+         + + + +EP
Sbjct: 67  SPTQRVGGRASSQFTEVRHLEPLLSLGNVFSAEELRAFDERVRSGLP--AGSKVEYVMEP 124

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVR 188
           KIDG   ++ YE GK V AA RGDG  GE+V+A +R I +IP  L       +PE+++VR
Sbjct: 125 KIDGLACSLIYENGKLVRAATRGDGVVGENVTANVRTIRSIPLTLKVPDGETVPELLDVR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ +  F+ LN++    G   +ANPRNAA+G LR+L+P    +R L+FF + L    
Sbjct: 185 GEVYMPRQAFMRLNEQRAERGESEFANPRNAAAGSLRQLDPQVTASRSLSFFAYYLV-GE 243

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   E L  +   GF V+   +        + Y  +   +R  L YD DG V KV+
Sbjct: 244 GAQPK-HSESLALLAHYGFKVSENYKVVENIDEAIKYIGDFNELRQGLSYDTDGAVIKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q+ LG   + PRW  ++K+  +QA T L DID ++GRTG+LTP A L PV + G++
Sbjct: 303 DVYQQRILGATGKDPRWATAYKYPPEQAETTLEDIDWRVGRTGVLTPTAVLTPVKLSGSV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I+ ATLHNED+I+            +DIR+GDRV++ +AGE+IP+V+ ++V +R  D + 
Sbjct: 363 ISRATLHNEDFIRA-----------KDIRIGDRVVINKAGEIIPEVLRVVVEKRTGDEKE 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            + PS CP C  RV R          AA RCT    C A   E L HFVSRDA NI+G G
Sbjct: 412 VAIPSVCPECGWRVERQGEE------AAIRCTNP-HCPALGREGLIHFVSRDAMNIDGCG 464

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              ++        A  +R  AD+++L++       ++      G+ S  NL  ++ + + 
Sbjct: 465 PSVINALLD----AGLVRDAADLYSLRKDDLLKLERM------GEKSADNLLAALAESKK 514

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L++ +F+LGIRHVGA++AR LA  + S +   Q     +A          ++  +GD 
Sbjct: 515 NELDKLLFALGIRHVGAKVARILATEFGSMEKLQQAQPEELA----------QIRDIGDK 564

Query: 608 IAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           IA+++V +   P NI  VE      ++ +         +    K LVFTGT+  + R +A
Sbjct: 565 IAESVVTWLNVPANIDLVERLAAAGLTMTFTPTASQEDNPFFGKTLVFTGTMPTLGRAEA 624

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +     +GA VS  +S+KTD +I G   GSKLEKAQQLGV +++E +FL LL+
Sbjct: 625 KTMAQDVGAKVSGSVSKKTDYVIAGAEAGSKLEKAQQLGVTVIDEAEFLRLLK 677


>gi|312622179|ref|YP_004023792.1| DNA ligase, nad-dependent [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202646|gb|ADQ45973.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 673

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/704 (34%), Positives = 385/704 (54%), Gaps = 49/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+       + +   + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G F+  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFIRGATRGDGNVGEDVTENLKTIRSIPLRLKEDI--SIVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  +    +   +   
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNVQWCEKEL-ETHA 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   
Sbjct: 236 EALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVA 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           GE A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN
Sbjct: 296 GETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP
Sbjct: 356 MDYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C + V++  +        A+RCTG + C A+    + HFVSRDA +I G+G+  +   F
Sbjct: 405 VCGADVIKFEDE------VAYRCTG-VECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLF 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+ PADI+ L+     +  +      FG  S  NL  +I   +N  L+R I+
Sbjct: 458 EK----GLIKTPADIYYLKFEDLVNLER------FGVKSTNNLLKAIQASKNRPLDRLIY 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIRH+G + A++LA++  S  +                  L+ +P  G+ +A+++V F
Sbjct: 508 ALGIRHIGQKAAKTLAEHISSIDDLFTITEE----------QLLSLPDFGEKMAKSVVTF 557

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++  +    +E L      ++   +   S  ++    V TG L K  R++A+E +  LGA
Sbjct: 558 FRQDQTKHLIERLKAAGVNTVSEKKAK-SDILKGYTFVLTGALSKYSRNEAKEILESLGA 616

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 617 KVTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660


>gi|332880018|ref|ZP_08447702.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682014|gb|EGJ54927.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 663

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/705 (32%), Positives = 370/705 (52%), Gaps = 49/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E++ H+  YY    P I D E+D   +   A+  A P+     D N P  +
Sbjct: 2   KEKIQQLREELNQHNYNYYVLDTPTISDFEFDQKLKELQALEQAHPEY---YDENSPTVR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +   V H     SL+  ++ EDL ++  RI +       + I FT E K DG 
Sbjct: 59  VGGTITKNFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTLGS---DQINFTCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + YE GK   A  RGDG  G+D++A +R I ++P  L  + PE   +RGE+ + K  
Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIGSVPLQLKGDYPERFYIRGEIVMPKKA 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN E +A G  P+ NPRN ASG L+  +  ++  R L+  ++ L    +   K Q+E
Sbjct: 176 FEALNKERVAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLV--GDTGIKSQFE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V N  +  ++   ++ + NE  S R TLPY+ DG+V KVD  + Q++LG
Sbjct: 234 GLEKARAWGFKVPNISKLCHSTAEVMDFINEWDSKRHTLPYETDGVVVKVDSIAQQEELG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  +Q  T L  I  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTLLESISYQVGRTGAITPVANLQPVLLAGTIVKRASLHNA 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DI +GD V V++ GE+IPK+V + + +R  +A+   + + CP 
Sbjct: 354 DQIEKL-----------DIHIGDSVYVEKGGEIIPKIVGVNLEKREANAEKVQYITHCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR+         A H C    +C  Q   +++HF+SR A +IEGLG++ ++  F+
Sbjct: 403 CGTALVRNEGE------AQHYCPNSNSCPPQITGKIQHFISRKAMDIEGLGEETVELLFR 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I   AD++ +   +     ++         S  N+   I K + I  ER +F+
Sbjct: 457 ----AGIIHTYADLYEVTVAKLLPLERMAQ------KSAENIVKGIEKSKEIPFERVLFA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LA++Y + +          A        LI V  +G+ IA ++V F+
Sbjct: 507 LGIRYVGETVAKKLARHYKTIE----------ALEAATIEQLIEVDEIGNQIASSVVSFF 556

Query: 617 QNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  N   +E L           +  +  + +++    V +G      R + +  + Q G
Sbjct: 557 ADAYNRALIERLKGYGLQFALSEQATEGQTDKLKGLTFVVSGVFHLHSRDELKTLIEQHG 616

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             V + +S KT  +IVGDN G SK EKA+ LGVK+++EE+F  L+
Sbjct: 617 GKVGSSISSKTSYVIVGDNMGPSKKEKAESLGVKMISEEEFEALI 661


>gi|328950509|ref|YP_004367844.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
 gi|328450833|gb|AEB11734.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
          Length = 676

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/712 (33%), Positives = 380/712 (53%), Gaps = 51/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+A+K +  L Q I YH+  YY    P I D+EYDAL R   A+   +PDL     P
Sbjct: 1   MTREEAKKRVLELRQAIRYHNYRYYVLDDPEISDAEYDALMRELKALEARYPDLV---TP 57

Query: 72  NGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P   +G G +  S  ++ H  P  SL+  +N+E++R+F  R+ R   +       +T+
Sbjct: 58  DSPTQVVGAGMIESSFREIQHPTPLYSLDNAFNLEEVREFEARLERALGRP--GPFEYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  + + YE+G  V+ A RG+G +GE+V+  +  IP +PR L    P  +EVRGE
Sbjct: 116 EYKIDGLSVNLYYEEGFLVWGATRGNGRTGEEVTQNLLTIPDVPRRL-EGAPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SE 248
           VY+ ++ FL LN      G  P+ NPRNAA+G LR+ +P    TR L  + +G+G    E
Sbjct: 175 VYMPRDTFLKLNQAREEAGLPPFKNPRNAAAGSLRQQDPRVTATRGLRAYFYGIGLGLQE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q E+L  ++  GFPV    R      GI + Y    + R T+P++ DG+V K++ 
Sbjct: 235 TGVETQAELLDYLKRAGFPVEPHARVVRGVEGIETAYQAFLAQRHTVPFEADGVVVKLNN 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q +LG  A+SPRW +++KF  ++  TR+L++  Q+GRTG +TPVA LEPV + G  +
Sbjct: 295 LAWQDELGYTAKSPRWAVAYKFPAEEKKTRVLEVIFQVGRTGRVTPVAVLEPVLLDGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  +LHNE Y++ L            + +GD VLV +AG +IP+V+ ++  ER    +P 
Sbjct: 355 SRVSLHNEAYLEEL-----------GLMLGDWVLVHKAGGIIPEVLRVLKEERTGTERPL 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C   +V +           HRC   L C AQ  ER++H+ SR A +I+GLG+
Sbjct: 404 VFPDACPACGHALVLE--------GKIHRCPNPL-CPAQAFERIRHYASRRAMDIQGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       IR PAD++ L +    S  +      FG+ S  NL   I   +  
Sbjct: 455 RHIEQMLEK----GLIRTPADLYRLTKADLVSLER------FGEKSAENLLAQIEASKTR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +F+LGI  VG  +AR+LA+ + +     +     +          + V  VG++ 
Sbjct: 505 GLERLLFALGIPQVGEALARTLARRFGTLDRLLEATPEEL----------LEVEDVGELT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ I E   +P  +  +E L +    S    E+  S  +     V TG L +  R + + 
Sbjct: 555 ARRIHETLHDPAMLELIEQL-RAAGVSFEAKERPRSDALAGLTFVLTGELSRP-RAEVKR 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LGA V++ +S+KT  ++ G   GSKL+KA++LG+ +++E     L+QQ
Sbjct: 613 RLEALGAKVASAVSKKTSYVVAGAGAGSKLQKARELGIPVLDEAGLEALIQQ 664


>gi|226953496|ref|ZP_03823960.1| DNA ligase [Acinetobacter sp. ATCC 27244]
 gi|226835781|gb|EEH68164.1| DNA ligase [Acinetobacter sp. ATCC 27244]
          Length = 675

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/710 (36%), Positives = 380/710 (53%), Gaps = 47/710 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +++ P    NK+
Sbjct: 8   EQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTP---TNKV 64

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG+       VTH +P LSL  ++N E+L  F  RI        +  + + +E K+DG  
Sbjct: 65  GGQALSKFESVTHVVPMLSLGNVFNQEELFAFARRIDERLP---NQKVQYEVELKLDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISK 195
           I++ YE G  V    RGDG +GED++  ++ I  +P+VLS     IP+++EVRGEV + K
Sbjct: 122 ISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSGQSQAIPQLLEVRGEVLMPK 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF-AKG 253
             F  LN +  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +         
Sbjct: 182 QGFEKLNADQAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQPHHGLAT 241

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ L  +   GF +        +   +   Y +++  R  L  +IDG+V KVD+   Q+
Sbjct: 242 MHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQQERPDLNVEIDGMVVKVDDLKQQQ 301

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +R PRW  ++KF  + A T++ +ID Q+GRTG LTPVARL PV +GG  ++N TL
Sbjct: 302 QLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGVTVSNVTL 361

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+    P+ 
Sbjct: 362 HNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWAEFRPTDAEIVHLPTN 410

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++ 
Sbjct: 411 CPVCDSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVES 464

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     ++  ADI+ L   +     K+  I   G+ SV NL D+I+  +  +L RF
Sbjct: 465 LL----HLDLLKDVADIYHLHTHR----EKLLTIEKMGEKSVQNLIDAIDASKKTTLARF 516

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIR VG   AR LA  + +            A    D  SL + P VGDI A+ I 
Sbjct: 517 IYGLGIRGVGETTARMLANTFQTLD----------ALKAADVESLKKTPDVGDITAEWIA 566

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +F+Q P NI  ++ L                  +  +  V TGTL+ + R +A + +  L
Sbjct: 567 DFFQAPHNIEVLDRL-MAAGIHWDAPTAPTRQPLNGESWVVTGTLESMGRDEATQRLQAL 625

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           GA VS  +S KT  ++ G+  GSKLEKAQ+L +++MNE++FL  L QY  
Sbjct: 626 GARVSGSVSSKTKCVVAGEKAGSKLEKAQKLEIRVMNEQEFLDFLAQYQA 675


>gi|16329180|ref|NP_439908.1| NAD-dependent DNA ligase LigA [Synechocystis sp. PCC 6803]
 gi|7674015|sp|P72588|DNLJ_SYNY3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|1651660|dbj|BAA16588.1| DNA ligase [Synechocystis sp. PCC 6803]
          Length = 669

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/696 (33%), Positives = 369/696 (53%), Gaps = 49/696 (7%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
                YY    P++ DS YD L R    +    P+L     P+ P  ++G +       V
Sbjct: 16  KASYAYYVLDAPVMEDSVYDQLYRELQRLEAENPELI---TPDSPTQRVGEQPASQFRSV 72

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H+IP  SLE  +N+++L+++  R  R     +     +  E KIDG+ I + YE G  V
Sbjct: 73  AHNIPLYSLENAFNVQELQQWQERWQRIAPTIE--KAEYVCELKIDGSAIALTYENGLLV 130

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAV 208
               RGDG +GE++S  I+ I +IP  L+L N P  +EVRGE ++   +F  +N E  A 
Sbjct: 131 RGVTRGDGTTGEEISQNIKTIRSIPVKLNLDNPPPTVEVRGEAFLPLEEFNRINHEREAQ 190

Query: 209 GRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG-KTSEIFAKGQYEMLQKMRCLGF 266
           G   +ANPRNAA+G LR+L+P  +  R L FF + L     E   + Q++ L+ ++  GF
Sbjct: 191 GESLFANPRNAAAGTLRQLDPKIVHQRRLQFFAYTLHLPGQEDKIQSQWQALEYLKKAGF 250

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
            VN   +       +V+Y+ + +  R  LPY  DG+V K++++ LQ++LG   + PRW I
Sbjct: 251 MVNPHCQLCKGLDEVVAYFEDWEGARQRLPYMTDGVVVKINQYPLQRELGFTQKFPRWAI 310

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           + K+  ++  T +  I++ +GRTG +TP+A +EPV + G  +  ATLHN+D I+ L    
Sbjct: 311 ALKYPAEETPTVVKAIEVNVGRTGAVTPLAVMEPVQLAGTTVQRATLHNQDRIQEL---- 366

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                  DIRVGD V++++AGE+IP+VV ++   R  +  P+ FPS CP C S +VR L 
Sbjct: 367 -------DIRVGDTVIIRKAGEIIPEVVRVMTELRPENTTPYIFPSHCPACGSPLVRPLE 419

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                  A  RC    +CSA     L H+ SR+A +I+GLG++ +    ++      +  
Sbjct: 420 E------AVIRCVNS-SCSAILQGSLIHWASRNALDIQGLGEKVVITLLENR----LVNS 468

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            AD++ LQ  Q     +      F   S   L  +I   ++    R +F LGIRHVG   
Sbjct: 469 VADLYGLQVEQLLGLER------FAQKSAEKLIAAIEVSKSQPWSRILFGLGIRHVGQVN 522

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV- 625
           A+ L++ + + +  +Q               L  V  +G  IA+A+V +++NP N   + 
Sbjct: 523 AKLLSQQFPTVEKLSQA----------SIPDLEGVYGIGPEIAEAVVNWFRNPGNQQLIQ 572

Query: 626 --EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
             E L   ++       K  S +++ K  V TGTL  + R +AQE + Q G  V++ +S 
Sbjct: 573 DLEELGLVLANQGIDQTKTDSGKLKGKTFVLTGTLPNLSRLEAQELIEQSGGKVTSSVST 632

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KTD +++GD PGSK  KA+ LG+K+++E +FL LL+
Sbjct: 633 KTDYVLLGDKPGSKAAKAESLGIKLLSEAEFLQLLE 668


>gi|303258051|ref|ZP_07344059.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47]
 gi|331000674|ref|ZP_08324326.1| DNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859070|gb|EFL82153.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47]
 gi|329570827|gb|EGG52542.1| DNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 684

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/712 (34%), Positives = 384/712 (53%), Gaps = 45/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +  +  L +E+  H+  YY  + P + D  YD+L +    +   +P     + P  
Sbjct: 9   LEAVKLRMEKLAEELEKHNKAYYIDNAPTVSDEIYDSLFQELARLEKEYPQF---KSPVS 65

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           P  ++G  +   L KVTH++P LS+  E  +  +    F  R+ R  +   D +I +  E
Sbjct: 66  PTERVGATVQSELKKVTHAVPMLSIHTETDYTAQGAYDFDARVRRELELTPDQTIDYDCE 125

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I +RYE G  V AA RGDG++GEDV+A ++ I T+P  +    P+I EVRGEV
Sbjct: 126 LKFDGLAINLRYEDGVLVQAATRGDGYTGEDVTANVKTIKTLPLKV-DGFPKIFEVRGEV 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            + K  F  LN+E  AVG K +ANPRNAA+G LR+L+      R LNF+ +G G+ SE+ 
Sbjct: 185 IMHKEVFRKLNEEQEAVGAKLFANPRNAAAGSLRQLDSALTAKRNLNFYAYGYGEVSEMP 244

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A  Q  +L  ++  GFPV +      T   + +++ E+  IR  LP+DIDG+VYKV+ F+
Sbjct: 245 ADTQSGLLDYLKSKGFPVISNRIVVQTPEQLEAFHLEVARIRHDLPFDIDGVVYKVNSFA 304

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            QKQLG  +R PRW ++HK+  ++  T++LDI +Q+GRTG LTPVARL+PV +GG  I+N
Sbjct: 305 RQKQLGFVSREPRWAVAHKYPPEEVQTQVLDITVQVGRTGKLTPVARLKPVFVGGTTISN 364

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +LHNE++++ +            I++GD V+V RAG+VIP++V +I   R  DA+ F  
Sbjct: 365 VSLHNEEFLQNM-----------GIKIGDTVVVHRAGDVIPEIVRVIPELRPKDARDFVM 413

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P FCP+C S   ++   K         C+GGL C AQ+ + + HFVSR A  I+G+G++ 
Sbjct: 414 PEFCPVCGSHAYKEDGEK------DRHCSGGLFCRAQRAQSILHFVSRKAMGIDGIGEKL 467

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +   + +     +   ADI+ L   +     ++         S   L  SI   +  +L
Sbjct: 468 AEQLIEHD----LVTTVADIYRLTVDKLVGLDRMGQ------KSAEKLVASIEASKKTTL 517

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ERF++++ I  VG   AR+LA ++ + +   +               L  V  +G   A+
Sbjct: 518 ERFLYAISIPEVGEATARNLASHFGALKPLEEA----------SLEQLQEVEDIGPSGAE 567

Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I+ F+  P NI  +  L+   V    G         +     V TGTL  + R +A + 
Sbjct: 568 NILHFFAEPANIAVINDLMDRGVVWEEGTGTSGQELPLNGLTFVLTGTLPTLSRDEASDI 627

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           + + G  VS  +S+KT  ++ G++ GSKL KA+ LGV I++E +   ++ Q 
Sbjct: 628 IRKAGGKVSGSVSKKTSYVLAGESAGSKLAKAEALGVNIIDEPELFKMINQG 679


>gi|222099565|ref|YP_002534133.1| DNA ligase [Thermotoga neapolitana DSM 4359]
 gi|254781438|sp|B9K734|DNLJ_THENN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221571955|gb|ACM22767.1| DNA ligase [Thermotoga neapolitana DSM 4359]
          Length = 693

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/707 (35%), Positives = 385/707 (54%), Gaps = 47/707 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            ++  +E+  L +EI YH+  YY  + P+I D EYD L RR   +   +P+L     P+ 
Sbjct: 12  PKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELV---TPDS 68

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG++      V HS+P LSL+  +N E++ +F  R+ +  Q+     + +  E K
Sbjct: 69  PTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEIIEFDKRVKKTLQES---EVEYVAELK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I +RYE G+FV  A RGDG  GEDVS  ++ I ++P  L    P  IEVRGE+Y+
Sbjct: 126 IDGVSIALRYENGRFVLGATRGDGVEGEDVSENVKTIRSVPLRLRK--PLTIEVRGEIYM 183

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
             ++F  LN+E    G  P+ANPRNAA+G LR+LN   +  R L+ F++ +        K
Sbjct: 184 PVDEFKRLNEEREEEGLPPFANPRNAAAGTLRQLNTALVASRRLDSFIYYVVHPENYGLK 243

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q+E LQ ++ +GF VN   R       ++ Y+ E K  +  L Y +DG+V KV+ F  Q
Sbjct: 244 TQWEALQFLKEIGFKVNPHSRLCKNIQEVIEYWREWKERKRELDYWVDGVVVKVNRFDFQ 303

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LGE +++PRW I+ KF  +QA TR+LD+ IQ+GRTG+LTPVA LEPV + G ++  A+
Sbjct: 304 KVLGETSKAPRWAIAFKFPAEQARTRILDVTIQVGRTGVLTPVAELEPVQLAGTIVKRAS 363

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN +YI+            +DIR+GD V V++AG +IP++V  I   R    +    P 
Sbjct: 364 LHNFEYIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGSEKEIKPPQ 412

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +V      K      A RC     C A+    L+ FVSR+A +IEGLG++ +D
Sbjct: 413 SCPVCGGKV-----GKLSPDEVAIRCLNP-HCPAKLKRALRTFVSREALDIEGLGEKIID 466

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               S      ++  ADIF L               G G  ++  +   I + +   L +
Sbjct: 467 RLVDS----GLVKDIADIFYLTPFDLAQLG-----PGIGQRTIAKILQEIEEAKKRPLHK 517

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I  LGI  VG + A+ LA+++ S +  A+            + +L  +P +G  IA++I
Sbjct: 518 LITGLGIPMVGQKTAKILAEHFKSLEAIAEA----------SYETLKDIPGIGPEIARSI 567

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           VE+++NP+    +E L K       +  K     ++      TGTL+   R +  E++ +
Sbjct: 568 VEYFRNPKTREIIEKLKKAGVKLEEKTVKY--DVLKGLTFAVTGTLKNFTREEIIEFLER 625

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LGA V   +S+ TD +IVG+NPGSK EKA+ L VK M+EE+FL  ++
Sbjct: 626 LGARVVNSVSKNTDYLIVGENPGSKYEKAKALKVKTMSEEEFLRFVE 672


>gi|166364069|ref|YP_001656342.1| DNA ligase [Microcystis aeruginosa NIES-843]
 gi|254781371|sp|B0JTW2|DNLJ_MICAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166086442|dbj|BAG01150.1| DNA ligase [Microcystis aeruginosa NIES-843]
          Length = 669

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/707 (31%), Positives = 367/707 (51%), Gaps = 47/707 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++    L+ E+      YY    P I DS YD L R  + I   +P L     P+ P 
Sbjct: 6   EIQQRCQQLKTELQRASYAYYVLDDPFIPDSVYDQLYRELEDIEKRYPQLI---TPDSPT 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +++     V H+IP  SLE  +N+E+L K+  R  R+  +  D    +  E KID
Sbjct: 63  QRVGDKISSQFVSVRHNIPLYSLENAFNLEELNKWGNRWQRYVNETQDTE--YVCELKID 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           G+ + + YE G  V    RGDG +GED++  +R I +IP  L++ N P I+EVRGE ++ 
Sbjct: 121 GSALALTYENGFLVRGVTRGDGVTGEDITPNVRTIRSIPLRLNIDNPPAIVEVRGEAFLP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
            + F  +N E        +ANPRNAA+G LR+L+P  +  R L FF + L    +     
Sbjct: 181 LDTFDKINQEREEKRESLFANPRNAAAGTLRQLDPKIVDKRRLQFFAYTL-HLDDNNITN 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q++ L ++  +GF VN   +   +   +  YY + +  R  L Y  DG+V K+++   Q 
Sbjct: 240 QWQSLDRLESMGFLVNPHRQLCPSLQQVAQYYQDWQEKRHQLAYMTDGVVVKINDLQRQN 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG   + PRW I+ K+  ++  T + DI I +GRTG +TP+A +EPV + G  +  ATL
Sbjct: 300 RLGFTQKFPRWAIALKYPAEEVPTVVKDIIINVGRTGAVTPMAVMEPVQVAGTTVQRATL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D +  L           DIRVGD V++++AGE+IP+VV I+   R     PF  P+ 
Sbjct: 360 HNSDRVAEL-----------DIRVGDTVIIRKAGEIIPEVVRILPELRPNHTSPFQMPTN 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP CQS +VR +        A  RC    +C A     + H+ SRDA +I GLG++ +  
Sbjct: 409 CPECQSPLVRPVGE------AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKVVIL 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       +   +D+++L++      T+I  +   G+ S  NL  ++ + +N S  R 
Sbjct: 462 LIEQ----GLVTAISDLYSLEK------TEIAKLDRMGEKSALNLITAMAQSKNQSWSRV 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LGIR+VG+  A+ LA+ + + +  A      +A           +  +G+ IAQ++ 
Sbjct: 512 LYGLGIRYVGSVNAKILAESFRTVEELANASVTDLA----------SIYGIGEEIAQSVY 561

Query: 614 EFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++++   N   V       +  +         + +  K  V TGTL  ++R +A+E + +
Sbjct: 562 DWFRIEANRDLVAKLQAAGLQFAAAAKTTTTKATLAGKTFVITGTLPTLKREEAKELIEK 621

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  V+  +S+KTD +++G+  GSKLEKA +LG+  + E Q L L++
Sbjct: 622 AGGKVTGSVSKKTDYLVLGEAAGSKLEKALELGITQLTEAQLLELIK 668


>gi|224476961|ref|YP_002634567.1| DNA ligase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254781419|sp|B9DMU3|DNLJ_STACT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222421568|emb|CAL28382.1| DNA ligase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 668

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/708 (32%), Positives = 373/708 (52%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +    +  L   ++ +   YY    P + DSEYD L R    I +A P+       + 
Sbjct: 1   MAELATRVQELHHLLNKYSHEYYVQDNPSVPDSEYDKLLRELIDIENAHPEYKTE---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   +  KV H  P LSL   +N E+LR+F  R+     K     + +  E K
Sbjct: 58  PTVRVGGEAQATFNKVRHDTPMLSLGNAFNEEELRRFDARVREKAGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG  GED++A +R I  IP  L +N P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTIGEDITANLRTIRAIP--LRINKPLTFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K  F  LN +    G + +ANPRNAA+G LR+L+      R L+ F++ +   +   A+
Sbjct: 171 PKKSFEHLNQQKEEAGEQAFANPRNAAAGSLRQLDSKLAAKRRLSIFLYSVNDFTNFHAE 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N   ++ +   G++ Y     + R  LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDELGFKTNQNRKRVSDIDGVLEYIKYWTAHREELPYDIDGIVIKVNDLEEQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EELGYTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAVLEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +DIR+GD V++K+AG++IP+V+  + + R    +P+  P+
Sbjct: 351 LHNEDLIH-----------EKDIRIGDSVVIKKAGDIIPEVIRSLPDRRPEGTEPYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E + HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRLDGE------VALRCINP-KCPAQLVEGMIHFVSRQAMNIDGLGTKIIM 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++E     I+   D++ L +       ++      G+    NL ++I   +  SLE 
Sbjct: 453 QLYENEI----IKDVGDLYYLTKDDLLPLERM------GEKKADNLLNAIEASKKNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ +A+ + +     +     +          + +  +GD +A ++
Sbjct: 503 LLFGLGIRHLGVKASQVIAERFETMDRLFKVTEEEL----------LEIHDIGDKLATSL 552

Query: 613 VEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           + +  N   I  +E      +      I   E    SE   K +V TG L  + R +A +
Sbjct: 553 ITYLNNKDIIALIEKLRRKNVNMTYEGIKTSEIQTDSEFNGKTVVLTGKLHNMTRTEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA  ++ +++ TD++I G++ GSKL KA++LG ++ +E++F+ 
Sbjct: 613 WLEAQGAKTTSSVTKNTDLVIAGEDAGSKLTKAEKLGTEVWSEDEFIQ 660


>gi|254465633|ref|ZP_05079044.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I]
 gi|206686541|gb|EDZ47023.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I]
          Length = 750

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/763 (39%), Positives = 441/763 (57%), Gaps = 59/763 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +     + AL+ E AR E  +LE ++   D  Y+Q   P I D+EYD+LK+R  A+A 
Sbjct: 1   MAENSEKDVTALTAEDARAEFLALEDQLRAADLAYHQADAPEISDAEYDSLKQRYRALAE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFPDLA +      L+ +G        K+TH++  LSL   +  ED+  F   + ++   
Sbjct: 61  AFPDLADAAT---HLDAVGAPAASGFGKITHAVRMLSLGNAFAEEDVTDFDRSVRKYLGL 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             + ++ +T EPKIDG  +++RYE+GK V AA RGDG  GE+V+A  R I  IP+ L+  
Sbjct: 118 GGEAALGYTAEPKIDGLSLSLRYEQGKLVQAATRGDGSVGENVTANARTISDIPQHLT-G 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFF 239
            PE++EVRGEVY+S  DF ALN      G K +ANPRNAA+G LR+L+      R L FF
Sbjct: 177 APEVLEVRGEVYMSHADFEALNARHAERGGKIFANPRNAAAGSLRQLDAEITRARPLRFF 236

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ S   A+ Q E +++++ LGF  N   R   +   ++ +Y  ++  R+TL YDI
Sbjct: 237 AYSWGELSAPLAETQMEAIERLQSLGFQTNPLTRLCTSVADMIDHYRSIEEQRATLGYDI 296

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV++ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL 
Sbjct: 297 DGVVYKVNDLALQGRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLT 356

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNEDYI+G D+ G+ +RGG+DIR+GD V + RAG+VIPKV D+ ++
Sbjct: 357 PVTVGGVVVSNATLHNEDYIQGRDSKGEEIRGGKDIRIGDWVQIYRAGDVIPKVADVDLS 416

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   A+P+ FP  CP C S   R+      +  A  RC+GGL C AQ +E+LKHFVSR 
Sbjct: 417 KRPQHAEPYQFPHTCPECGSPAERE------EGDAVRRCSGGLICPAQAVEKLKHFVSRA 470

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLG +Q++ F         I+ PADIF LQ    +   +++N  G+G+ S  NL+
Sbjct: 471 AFDIEGLGAKQVEQFHSD----GWIKEPADIFDLQANYGSGLQQLKNREGWGEKSADNLF 526

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------------------- 580
            +I ++R I L + IF+LGIRH G    R LA +Y  +Q                     
Sbjct: 527 AAIEEKRTIPLAKLIFALGIRHAGEVAGRDLALHYRDWQGMAAALDAARPAALAHRAADE 586

Query: 581 ------------------------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
                                   A     + A     W  LI V  +G ++  ++ + +
Sbjct: 587 AEEAERQSAAEEGRRARISETRAAAIAACEVPAEAASAWADLIGVDGIGAVLGLSLSDAF 646

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            NP    A++ L+ +++  +        S +  K +VFTGTL+K+ R +A+     LGA 
Sbjct: 647 ANPEERAAIDRLVAKLTV-VPPDAPAADSPVAGKTVVFTGTLEKMTRAEAKARAEALGAK 705

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KTDI++ G   GSK +KA +LG++ ++E+ +L L+ 
Sbjct: 706 VSGSVSKKTDILVAGPGAGSKAKKAAELGIQTLDEDGWLELIA 748


>gi|87119444|ref|ZP_01075341.1| NAD-dependent DNA ligase [Marinomonas sp. MED121]
 gi|86164920|gb|EAQ66188.1| NAD-dependent DNA ligase [Marinomonas sp. MED121]
          Length = 676

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/715 (35%), Positives = 389/715 (54%), Gaps = 46/715 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +    ++S L   ++ +   Y+   +P + D+EYD   R   A+    PDL ++   + P
Sbjct: 3   DSITAQISELVNRLNDYSYAYHVKDEPKVSDAEYDLDYRTLIALEKQAPDLIQA---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G + +     V H++P LSL+  ++ E L +F  R+++    +    + +  EPK+
Sbjct: 60  TQRVGEKPDSGFQTVAHTVPMLSLDNAFSDEQLEEFEQRLFKLIGAQA---LSYCCEPKL 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  I++RYE G  V    RGDG +GED+++ I+ I +IP  L     P ++EVRGE+Y+
Sbjct: 117 DGLAISLRYEDGILVRGLTRGDGVAGEDITSNIKTIGSIPLKLRTQTPPPVLEVRGEIYM 176

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-A 251
            K  F ALN +    G K + NPRNAA+G LR+L+P+   +R L    + +G T      
Sbjct: 177 PKAGFEALNKQAEEKGEKAFVNPRNAAAGSLRQLDPSITASRPLVLCAYSIGHTEGWIQP 236

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y+ L  M   GF  N  + + ++  G V YY  +  +R  L YDIDG+VYKVD  +L
Sbjct: 237 DSHYDSLTLMSQWGFKTNPLMEKVSSIKGCVDYYQRLTELRPDLTYDIDGIVYKVDSLAL 296

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I+ KF  ++A T++LD+D Q+GRTG +TPVARL+PV +GG  ++NA
Sbjct: 297 QQELGFIARAPRWAIARKFPAEEAITQILDVDFQVGRTGAITPVARLDPVFVGGVTVSNA 356

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D I  L            +RV D V ++RAG+VIP+VV +I ++R  D+    FP
Sbjct: 357 TLHNKDEINRL-----------GVRVKDFVSIRRAGDVIPQVVKVIHDKRGEDSAEVIFP 405

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPICQS + +          A  RC+GGL C AQ+ E LKHFVSR A +I+GLG + +
Sbjct: 406 EVCPICQSELEQVTGE------AVIRCSGGLVCGAQRKEALKHFVSRKAMDIDGLGDKLV 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     I+ P DI+ L +++Q        +   G+ SV  L  SI   +     
Sbjct: 460 EQLVDLE----FIKTPVDIYHLFKKKQALLE----LERMGEKSVEKLLTSIEASKQTEFH 511

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIR VG   AR+L +++ +     +           +  SL++V  VG I+AQ 
Sbjct: 512 RFIYALGIREVGEATARTLTRHFKTLDKIIEA----------NTESLVKVDDVGPIVAQH 561

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +  F+    N   V ALL                +  +     V TGTL  ++R + ++ 
Sbjct: 562 LRRFFFKDSNKEMVMALLDAGLYWQEKEAASGETAQPLLGLTYVVTGTLTALKRDEVKDK 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +  LGA VS  +S KT  +I G+  GSKL KAQ LG++I++E   L LL+++   
Sbjct: 622 LISLGAKVSGSVSAKTHCLIAGEKAGSKLTKAQDLGIQILDEAGMLALLEEHGVA 676


>gi|254556107|ref|YP_003062524.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1]
 gi|300766626|ref|ZP_07076543.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180104|ref|YP_003924232.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|254045034|gb|ACT61827.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1]
 gi|300495726|gb|EFK30877.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045595|gb|ADN98138.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 679

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/721 (32%), Positives = 382/721 (52%), Gaps = 55/721 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            +++EQA  E ++L Q ++     YY    P + DS YD    R   +   FP L     
Sbjct: 7   TMTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQLV---T 63

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P   +GG +     KVTH IP LSL  +++  +L++F+ R     ++   + + +  
Sbjct: 64  PDSPTQLVGGTVKAGFDKVTHEIPMLSLGDVFSQAELQEFVDR----LEQNVGHPVDYNC 119

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G  V  + RG+G  GED++A I+ I +IP+ L+   P  I+VRGE
Sbjct: 120 ELKIDGLALSLRYEDGVLVQGSTRGNGTVGEDITANIKTIKSIPQRLT--RPLTIDVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
            Y+ K  F ALN+   A G   +ANPRNAA+G LR+L+   +  R L+ F++ +     +
Sbjct: 178 CYMPKAAFAALNERREAAGEPVFANPRNAAAGTLRQLDSRVVAERQLSTFMYNIADYEPL 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A+ Q +ML +   LGF +N   + A++   + SY +  ++ R  L Y IDG+V K +  
Sbjct: 238 TARTQSDMLTEFADLGFAINPDFKVAHSMADVFSYIDHYQNERPELAYGIDGIVIKANPL 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+ LG   + PRW I+ KF   +  T L D++  +GRTG++TP A +EPV + G  + 
Sbjct: 298 PLQRSLGATVKVPRWAIAFKFPPDEQPTLLKDVEWTVGRTGVVTPTAVMEPVQLAGTTVA 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DY+             +D+R+GD VL+ +AG++IP++  + + +R  DAQP  
Sbjct: 358 RASLHNPDYV-----------AAKDVRIGDTVLLHKAGDIIPEISSVDLAKRPKDAQPLV 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +V   +        A RC     C AQ  E L HF SR+A NI+GLG +
Sbjct: 407 IPTTCPSCGAPLVHLEDE------VALRCINP-KCPAQVQEGLVHFASRNAMNIDGLGPR 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   + +      +   A ++ L + Q  +  KI+      D S   L  +I++ R+ S
Sbjct: 460 IIAQLYANR----LVSDVAGLYRLTKAQLLTLDKIK------DKSAEKLLTAIDRSRDNS 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA++AR +A+++ + +         IA           +  +GD+IA
Sbjct: 510 LERLLFGLGIRHVGAKVARLIAQHFGTIEALMAASQEEIAA----------IDSMGDVIA 559

Query: 610 QAIVEFYQNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            A+V+++++      +              PS    E   +S    K++V TG L+   R
Sbjct: 560 NAVVQYFESDEVHTLIRELQAVNVNTTYQGPSATVAED-SNSWFAGKRVVLTGKLESFTR 618

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             A +++   GA V+  +S+KTD++I G + GSKL+KAQQL + + +E +F   +++   
Sbjct: 619 PDATQWLQAHGATVTGSVSKKTDLVIAGSDAGSKLQKAQQLDITVWDEARFSETMREDAQ 678

Query: 724 T 724
            
Sbjct: 679 A 679


>gi|188585101|ref|YP_001916646.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|254781378|sp|B2A5W5|DNLJ_NATTJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|179349788|gb|ACB84058.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 663

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/707 (34%), Positives = 383/707 (54%), Gaps = 49/707 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  +K++ +L ++I YH+  YY    P I D E+DAL      +   +P+    + P+ P
Sbjct: 3   KDIQKKVEALREKIEYHNHRYYVLDAPEISDQEFDALMNELIELEQTYPEY---QSPDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE      +V+H IP LSLE   + + L  F  R+ +  QK D     +  E KI
Sbjct: 60  SQRVGGEPLDKFPRVSHEIPMLSLENAESQKGLLDFHQRVSKNTQKTD---PVYVAELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE+G  V  A RGDG +GED++  ++ + +IP  L L+ P  IE+RGE ++S
Sbjct: 117 DGLALSLRYEQGILVRGATRGDGTTGEDITPNVKTVRSIP--LKLSKPLDIEIRGEAFMS 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN E    G  P+ANPRNAA+G LR+L+P     R L+FF + +          
Sbjct: 175 KASFERLNQEKAERGEDPFANPRNAAAGSLRQLDPKIPAKRDLDFFPYSVPYIRGENLDS 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y  +++++ LGF +N  +R+  T   ++SY  E +  R+ LPY+IDG+V K+++++LQ+
Sbjct: 235 HYSAVKELKDLGFKINPYIRKFETMEEVISYCEEWQEKRTKLPYEIDGVVIKLNDYNLQQ 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +++PRW I++KF  +QA +++ +I I +GRTG LTPV  LEPV I G+ +  A+L
Sbjct: 295 QLGATSKNPRWAIAYKFPAEQAESQVNNIFINVGRTGALTPVVELEPVRIAGSTVKRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED ++            +D+R+GDRV++++AG++IP+VV +    R    QPF +P  
Sbjct: 355 HNEDILR-----------QKDVRIGDRVIIQKAGDIIPEVVKVKEEARTGHEQPFVYPES 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C+S   R  +       A  RC     C AQ  ER+ HF SRDA +IEGLG++ ++ 
Sbjct: 404 CPVCKSEAKRINDE------AILRCINP-GCPAQAKERIIHFSSRDAMDIEGLGEKVVEK 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            +        I+  ADI+ L + +        N+ GFGD S  NL  +I + +     + 
Sbjct: 457 LYSH----GLIKDVADIYYLAKNEL------SNLEGFGDKSAENLLQAIEESKKNPFNKL 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LGIR VG   A+ LA  +    N  +               L ++  +G  +A +IV
Sbjct: 507 LYGLGIRLVGKRAAQLLAFEFEHLDNLMKA----------QIEDLTKINDIGPRMATSIV 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+Q       +  L K         E+N SS   +  K +V TGT     R +  + + 
Sbjct: 557 SFFQLEHTHNLIRKLKKAGVNMKEPTEQNKSSDPSLTGKLVVITGTFDNYTRRELTDLIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             GA V++ +S  TD ++VG NPGSK +KAQ LG+ I+ E      L
Sbjct: 617 AKGAKVTSNVSSNTDFVLVGANPGSKRDKAQDLGLTIIEESDLEDFL 663


>gi|52079149|ref|YP_077940.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580]
 gi|52784516|ref|YP_090345.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580]
 gi|319647076|ref|ZP_08001302.1| DNA ligase [Bacillus sp. BT1B_CT2]
 gi|81386291|sp|Q65MR2|DNLJ_BACLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52002360|gb|AAU22302.1| DNA ligase [Bacillus licheniformis ATCC 14580]
 gi|52347018|gb|AAU39652.1| LigA [Bacillus licheniformis ATCC 14580]
 gi|317390900|gb|EFV71701.1| DNA ligase [Bacillus sp. BT1B_CT2]
          Length = 667

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/715 (34%), Positives = 396/715 (55%), Gaps = 54/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++ +  L   I+ ++  Y+    P + DSEYD L +   A+    PDL   + P
Sbjct: 1   MEKEAAKRRVEQLHALINKYNYEYHTLDDPSVPDSEYDKLMKELIALEEEHPDL---KTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KV H  P LSL   +N EDLR F  R+      +    + + +E
Sbjct: 58  DSPSQRVGGAVLDAFQKVQHKTPMLSLGNAFNEEDLRDFDRRVR-----QAVGDVEYNVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  ++   IEVRGE 
Sbjct: 113 FKIDGLAVSLRYENGVFVRGATRGDGTTGEDITENLKTIRNIPLRMKRDL--SIEVRGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  F  LN   I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 171 FMPKRSFELLNKARIERDEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N+  ++ +T   ++    E+K+ R+ LPY+IDG+V KVD   
Sbjct: 231 VETQSQGLDFLDELGFKTNHERKKCSTIEEVIEIVEELKTKRADLPYEIDGIVIKVDSLD 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T LLDI++ +GRTG +TP A LEPV + G  +  
Sbjct: 291 QQEELGFTAKSPRWAIAYKFPAEEVVTTLLDIELSVGRTGAVTPTAILEPVKVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV+++V +R    + F+ 
Sbjct: 351 ASLHNEDLIK-----------EKDIRLLDKVVVKKAGDIIPEVVNVLVEQRTGKEKEFNM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 400 PKECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     +   AD++ L R Q  +  ++      G+ S  NL +SI K +  SL
Sbjct: 453 ITQLFRED----LVHNVADLYKLTREQLINLERM------GEKSTDNLLNSIEKSKKNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +GA+ A++LA ++ +     +     +          I V  +GD +A 
Sbjct: 503 ERLLFGLGIRFIGAKAAKTLAMHFETLDKLKKATKEEL----------IEVDEIGDKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           A+V +++    +  ++ L +    ++ +  K  ++E        K +V TG L ++ R+ 
Sbjct: 553 ALVTYFEKEEILKLLDELEELGVNTVYKGPKKAAAEASDSYFAGKTIVLTGKLSEMSRND 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+KTD++I G+  GSKL KA+ L +++ +E + +  L++
Sbjct: 613 AKAEIEALGGKITGSVSKKTDLVIAGEAAGSKLAKAEDLNIEVWDEARLISELKK 667


>gi|75906538|ref|YP_320834.1| NAD-dependent DNA ligase LigA [Anabaena variabilis ATCC 29413]
 gi|123745307|sp|Q3MGE7|DNLJ_ANAVT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|75700263|gb|ABA19939.1| NAD-dependent DNA ligase [Anabaena variabilis ATCC 29413]
          Length = 676

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/712 (32%), Positives = 373/712 (52%), Gaps = 55/712 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L + +      YY    P++ D+ YD L R    +    P+L     P+ P  +I
Sbjct: 9   KRVEELRRLLQQASYAYYVLDAPVMEDAVYDQLYRELQQLEIQHPELV---TPDSPTQRI 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G         V H+IP  SLE  +N+E+L+ +  R  R   +       +  E KIDG+ 
Sbjct: 66  GERPATQFLSVRHNIPLYSLENAFNVEELQAWDQRWRR---QVAPTEAEYVAELKIDGSA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII---EVRGEVYISK 195
           I + YE G  V  A RGDG +GED++  +R I +IP  LS +  E I   EVRGE ++  
Sbjct: 123 IALTYENGILVRGATRGDGVTGEDITQNVRTIRSIPLRLSFDGIENIGKVEVRGEAFLPL 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL---GKTSEIFA 251
             F  +N+E    G + +ANPRNAA+G LR+L+   + R  L+FF + L   G      A
Sbjct: 183 EVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSKIVARRRLDFFAYTLHISGMDDASIA 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q+E L+ ++ +GF VN+  +   +   +  YY    + R  LPY  DG+V K++ F L
Sbjct: 243 NTQWEALELLQKMGFRVNSQHQLCQSLAEVADYYRYWDTERLNLPYMTDGVVLKLNSFKL 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG   R PRW ++ K+  ++A TR+ +I + +GRTG LTP+A++ PV + G  ++ A
Sbjct: 303 QEQLGFTQRFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAQMRPVQLAGTTVSRA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           DIR+GD V+V++AGE+IP+VV ++   R  D QPF  P
Sbjct: 363 TLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVLKELRPVDTQPFIMP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C   VVR+         A  RC    +C+A     ++H+VSRDA +I+G+G++ +
Sbjct: 412 THCPVCGQPVVRETGE------AVTRCVNA-SCAAILKGSIEHWVSRDALDIKGVGEKLV 464

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                 E     +   AD+++L   Q     ++      G+ S   L ++I + +N    
Sbjct: 465 HQLVDKE----LVHSVADLYSLTNEQLFVLERM------GEKSAQKLIEAIAQSKNQPWS 514

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRHVG+  A+ L++ Y +    +    + IA           +  +G  IAQ+
Sbjct: 515 RVLYGLGIRHVGSVNAQLLSEKYRAVAELSSAKQSDIAG----------IYGIGAEIAQS 564

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           + ++++   N   +E L           E     N + ++  K  V TGTL  ++R +A+
Sbjct: 565 VYQWFRISANQRLIERLQAAGLQFANTEEISAVDNANLKLVGKTFVITGTLPTLKRDEAK 624

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + + G  ++  +S+KTD ++VG++ GSKLEKAQ LG+K ++E + L +L 
Sbjct: 625 ALIQKAGGKITESVSKKTDYLVVGEDAGSKLEKAQTLGIKQLSEAELLKILA 676


>gi|331702040|ref|YP_004398999.1| DNA ligase [Lactobacillus buchneri NRRL B-30929]
 gi|329129383|gb|AEB73936.1| DNA ligase [Lactobacillus buchneri NRRL B-30929]
          Length = 675

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/711 (33%), Positives = 380/711 (53%), Gaps = 53/711 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E +S +QA  +   L ++++   D YY Y  P + D+ YD   ++  A+ + FP +    
Sbjct: 4   ENMSEQQAAAKAGDLRKQLNQWADEYYTYDAPSVEDAVYDQTYQQLVALENQFPQIV--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  K+G        KV H IP LSL  +++ E+L +F+ R      + D  +  + 
Sbjct: 61  TPDSPTQKVGDHTLPGFTKVNHEIPMLSLGDVFSKEELAEFVDR----LSENDSVAFDYN 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I +RYE G FV  + RG+G  GED++  ++ I +IP+ L+   P  IEVRG
Sbjct: 117 CELKIDGLAINLRYENGVFVQGSTRGNGQIGEDITRNLKTIKSIPQKLT--RPINIEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           E Y+ K  F  LN++    G +P+ANPRNAA+G LR+L+P    +R L+ F++ +    +
Sbjct: 175 ECYMPKESFAKLNEQRQLDGEEPFANPRNAAAGSLRQLDPRVTRSRKLSTFMYNVADIDD 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +  Q  ML +++ LGF +N   + A+    I +Y ++ K +R  LPY IDG+V KV+ 
Sbjct: 235 LQSDTQSGMLAELKELGFTINPDFKVAHNMADIDNYVDKYKDLRDGLPYGIDGIVIKVNS 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ+ LG   + PRW I++KF  ++  T + DI+  +GRTG++TP A ++PV + G+ +
Sbjct: 295 LPLQRSLGATVKVPRWAIAYKFPPEEVQTIVRDIEWTVGRTGVVTPTAVMDPVTLAGSTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY+             +DIRVGD V + +AG++IP++   + ++R  ++Q +
Sbjct: 355 SRASLHNPDYL-----------AEKDIRVGDTVKLHKAGDIIPEISQYLPDKRPANSQAY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S +V            A RC     C AQ  E L HF SRDA NI+GLG 
Sbjct: 404 EIPTQCPSCGSTLVHLDQE------VALRCINP-QCPAQLKEGLTHFASRDAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   F+       +   A ++ L   Q  +  K      FG+ S T L  +I+  R+ 
Sbjct: 457 KIIAQLFEKHM----VSDVAGLYDLSFDQLLTLDK------FGEKSATKLLAAIDNSRSN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S ER ++ LGIRHVG + AR +A+ + +     Q     IA           +  +G II
Sbjct: 507 SCERLLYGLGIRHVGIKAARLIAQRFKNIDKVMQASAQDIA----------EIATMGMII 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           A ++V ++  P +   ++ L +                   S    KK V TG LQ I R
Sbjct: 557 ADSVVTYFSMPESKQLIDQLKQVGVNMDYLGVTDEQLAESDSFFTGKKFVLTGKLQNITR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             A +++   GA VS+ +S+ TDI++VG++PGSK +KA+ LG++  +E +F
Sbjct: 617 PDATQWLEDHGAKVSSSVSKNTDIVVVGEDPGSKYDKAKSLGIQTWDEARF 667


>gi|157804104|ref|YP_001492653.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel]
 gi|166216233|sp|A8EZT5|DNLJ_RICCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157785367|gb|ABV73868.1| DNA ligase [Rickettsia canadensis str. McKiel]
          Length = 689

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/709 (37%), Positives = 417/709 (58%), Gaps = 29/709 (4%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++A+K L  L  +I  ++  YY  +  ++ D+EYD L      +   FP L      
Sbjct: 7   ISEKEAKKLLKELADKIERYNHAYYIENNHLVSDAEYDQLFNTNLKLEQKFPHLILE--- 63

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  K+G ++     KVTH  P LSL  +++ +D++ F+ RI  F +  +   IF   E
Sbjct: 64  NSPSKKVGAKIANKFAKVTHQAPMLSLSNVFDEQDVKDFVDRIKNFLRLNEFAPIF--CE 121

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  ++ N PE +EVRGE+
Sbjct: 122 PKIDGLSFSAIYKNGLLTIGATRGDGYIGEDMTANIKTIKNFPHKIN-NAPEFLEVRGEI 180

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           YI K DF  LN E    GR  +ANPRNAA+G LR+L+ +    R L +FV+  G T +  
Sbjct: 181 YIEKQDFFNLNKEQEEQGRDKFANPRNAAAGSLRQLDSSVTAKRPLKYFVYSGGATEQNI 240

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A  Q E+L+K++  GF VN   + A++   I ++Y  +K+ R  L Y+IDG+VYK+++F+
Sbjct: 241 ASSQNELLKKLKEFGFRVNEISKLADSEEEIFAFYEYLKTNRENLSYEIDGVVYKLNDFA 300

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ ++G  AR+PR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ 
Sbjct: 301 LQNRMGFIARAPRFATAHKFPAIVGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR 360

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   I             +D+R+ D V ++RAG+VIP+++ + + +R  DA  F+ 
Sbjct: 361 ATLHNFQEI-----------IRKDVRIRDYVFLQRAGDVIPQIIGVDIGKRSTDATTFNT 409

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P FCP C S++               RC   L C AQ  ER++HFVS++A +IEGLG++Q
Sbjct: 410 PLFCPSCNSKLHYIPEDI------IIRCDNVLNCPAQNYERIRHFVSKNAMDIEGLGRKQ 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++F          I  P DIF L+ + + S TK+EN+ G+G  SV NL+ +I + RN+SL
Sbjct: 464 VEFLIDK----GLISNPLDIFLLKEKNEASLTKLENMDGWGRKSVENLFKNIEESRNVSL 519

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI++LGIRH+G + A+ LA+ + SY NF  +I  +  ++++ +  L  +  +GD I  
Sbjct: 520 PRFIYALGIRHIGEQNAKLLAREFESYNNFISQIELLSKNDSNIYQKLNNLEGIGDKILV 579

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I+ F+    NI  ++ L + ++      E    S +  K +VFTG+L    R +A+   
Sbjct: 580 DIINFFDVKENIELIKKLGEVLNIE-DYKETKEHSSLTGKIVVFTGSLPTTSRVEAKAMA 638

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +LGA V+  +S  TD++I G + GSKL+KA++LG+KI++EE++L ++ 
Sbjct: 639 EKLGAKVAVSVSSNTDLVIAGVDAGSKLKKAKELGIKIIDEEEWLTIVN 687


>gi|294085891|ref|YP_003552651.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292665466|gb|ADE40567.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 696

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/719 (41%), Positives = 435/719 (60%), Gaps = 32/719 (4%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
            R       +S + A +EL+ L + I+YHD  Y+    P I D++YD L  R +A+  +F
Sbjct: 2   TRDHPDPSKMSADDAAQELAYLAERIAYHDRKYHGEDAPDISDADYDMLVARNNALEASF 61

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L R   P+ P  ++G  ++ S  K+ H+ P LSL   ++ ED+  F+TRI +F    +
Sbjct: 62  PELIR---PDSPSQRVGTMVSGSFGKIRHAQPMLSLSNGFSAEDIADFVTRIRKFLSLAE 118

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
            + I FT EPKIDG  +++RYEKG  V AA RGDG  GEDV+A IR +  IP+ L   +P
Sbjct: 119 TDDIAFTAEPKIDGLSLSLRYEKGHLVQAATRGDGSEGEDVTANIRTVDAIPKTLPDTVP 178

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVH 241
           +I EVRGEVY+ + DFLALN +    G K +ANPRNAA+G LR+ + +   +R L FF +
Sbjct: 179 DIFEVRGEVYMDRKDFLALNADQERKGGKIFANPRNAAAGSLRQKDVSITGSRNLAFFAY 238

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +G+ S   A    + L  +R  GF VN+  R   +   +++ Y+ + S R++L YDIDG
Sbjct: 239 SMGEASAPVAATHTDFLAALRDFGFSVNDLSRHCLSLDDMLATYDAIGSQRASLDYDIDG 298

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD    Q++LG+ AR+PRW ++HKF  +QA T ++ IDIQ+GRTG LTPVARL PV
Sbjct: 299 VVYKVDRHDYQERLGQVARAPRWALAHKFPAEQAETTIIKIDIQVGRTGALTPVARLTPV 358

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG +++NATLHNED I             +DIR+GD V+++RAG+VIP+VV ++  +R
Sbjct: 359 TVGGVVVSNATLHNEDEIAR-----------KDIRIGDHVIIQRAGDVIPQVVRVLDEKR 407

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             D Q F+FP  CP+C S  +R          A  RCTGGLAC AQ +E+LKHFVSRDAF
Sbjct: 408 PDDVQIFTFPDRCPVCDSDAIRPEGE------AVRRCTGGLACEAQLVEQLKHFVSRDAF 461

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG +Q++ F +       ++ PADIF L+ R+     K+  + G+G  S+ NL+ S
Sbjct: 462 DIEGLGARQIEQFLE----LGWVKTPADIFRLETRR----DKLATLDGYGAKSLDNLFAS 513

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--WLSLI 599
           IN RR I LERFI++LGIR VG   +R LA +Y         ++     +  +    +L+
Sbjct: 514 INARRTIGLERFIYALGIRQVGQATSRLLALHYGDLDMMMSALDPENTESEHEIAIAALV 573

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  +GD +A  I  F+ +  +   V  L  E+S  +     +  S +  K +VFTGTL 
Sbjct: 574 DIDQIGDAMAADICRFFGDTAHRNIVNDLASELSI-LPPERPSEDSAVSGKTVVFTGTLA 632

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++ R +A+     LGA VS  +S KTD +I G + GSK  KA +LGV +++E+++  L+
Sbjct: 633 RMSRAEAKAKAEALGAKVSGSVSAKTDYLIAGADAGSKARKAAELGVTVLSEDEWRALI 691


>gi|257060505|ref|YP_003138393.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802]
 gi|256590671|gb|ACV01558.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802]
          Length = 674

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/696 (31%), Positives = 366/696 (52%), Gaps = 51/696 (7%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
             +  YY    PI+ DS YD L R    +   +P L     P+ P  ++G +       +
Sbjct: 21  KANYAYYVLDNPIMEDSVYDQLYRELQDLESQYPILI---TPDSPTQRVGDQPAAQFNSI 77

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H+IP  SLE  +N+++L+K+  R  R+ Q  + +   +  E KIDG+ + + YE G  +
Sbjct: 78  RHNIPLYSLENAFNLQELQKWEERWQRYDQVSNSD---YVCELKIDGSALALTYENGILI 134

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAV 208
               RGDG +GE+++  +R I +IP  L+L N P  +E+RGE ++  N+F  LN E    
Sbjct: 135 RGVTRGDGITGEEITQNVRTIRSIPLKLTLENPPSRVEIRGEAFLPLNEFDRLNGERKQA 194

Query: 209 GRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
           G   +ANPRNAA+G LR+L+   ++ R L FF + L    +     Q+E L+ ++ +GF 
Sbjct: 195 GEPLFANPRNAAAGTLRQLDSKVVSERRLQFFAYTLHLPEDNSLSSQWESLEWLKKMGFL 254

Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
           VN   +   T   +  Y+   ++ R  LPY  DG+V K+++++LQ QLG   + PRW I+
Sbjct: 255 VNPNCQLCPTLEAVADYFCHWETTRHDLPYMTDGVVVKINDYALQNQLGFTQKFPRWAIA 314

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
            K+  ++A TR+ +I + +GRTG +TP+A +EPV++GG ++  ATLHN D +  L     
Sbjct: 315 LKYPAEEAPTRVKEIIVNVGRTGAVTPMAIMEPVHLGGTIVQRATLHNRDRVSEL----- 369

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                 DIRVGD V++++AGE+IP+V+ ++   R P++QP+  PS CP C S +VR +  
Sbjct: 370 ------DIRVGDTVIIRKAGEIIPEVLRVLPELRLPNSQPYQMPSHCPECGSTLVRPVGE 423

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC    +C A     + H+ SRDA +I GLG++ +    ++      I   
Sbjct: 424 ------AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKIVSLLVEN----GLITSI 472

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
            D++ L   +  +  ++         S   L ++I   ++ S  R ++ LGIR+VG   A
Sbjct: 473 TDLYQLTPEKVAALDRMGT------KSAQKLINAIEGSKHQSWSRVLYGLGIRYVGNVTA 526

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + L   + S +  +Q     +A           V  VG+ IAQ++ ++++   N   +E 
Sbjct: 527 KLLTDNFPSVEVLSQASVPTLA----------SVYGVGEEIAQSVFDWFKIAENQTLIEQ 576

Query: 628 LLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
           L           S        S ++  K  V TGTL  ++R++A+  + + G  V+  +S
Sbjct: 577 LKIAGLQLENIASQAVSLTAASEKVAGKTFVLTGTLPTLKRNEAKALIEKAGGKVTGSIS 636

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            KTD ++VG+  GSKL KAQ+LG+  ++E   L  L
Sbjct: 637 SKTDYLVVGEEAGSKLAKAQELGITQLSEADLLKFL 672


>gi|325955534|ref|YP_004239194.1| DNA ligase [Weeksella virosa DSM 16922]
 gi|323438152|gb|ADX68616.1| DNA ligase [Weeksella virosa DSM 16922]
          Length = 663

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/704 (31%), Positives = 371/704 (52%), Gaps = 48/704 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L +E+  H+  YY   +P I D E+D   +    +    P+     DPN P  +
Sbjct: 4   QQRILALREELHQHNYRYYVLDQPSISDFEFDLKLKELQKLEKEHPEF---SDPNSPTVR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +   ++H     SL+  ++IE+L+++I R+Y+  +        F  E K DG 
Sbjct: 61  VGGSITKNFPTISHEYQMYSLDNSYSIEELKQWIARVYKNIENP-----TFVCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I+I YE GK   A  RGDG  G+D++A ++ I ++P +L  + P    +RGE+ I    
Sbjct: 116 SISILYENGKLTQAVTRGDGTQGDDITANVKTITSLPLILRGSYPTKFYMRGEITIPIKT 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++    G   YANPRN ASG L+  +  ++  R L  F +       +    Q+ 
Sbjct: 176 FDKINEQRKDEGLLLYANPRNTASGSLKLQDSAEVAKRGLQCFPYAFV-GENLGFDEQWT 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           M++K + LGF +       +    I++Y  + +S R  LP++IDG+V KV+ F+ Q++LG
Sbjct: 235 MIEKAKELGFKIPETASLCSNLEEIIAYITKWESKRHQLPFEIDGIVIKVNSFAQQEELG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  + A T L  I  Q+GRTG +TPVA L PV + G +I  A+LHNE
Sbjct: 295 YTSKSPRWAVAYKFKAEAAETTLESITYQVGRTGAITPVANLHPVQLAGTIIRRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK L           DIR+GD+V V++ GE+IPK+V +  + R    +   +   CP 
Sbjct: 355 DIIKKL-----------DIRIGDQVYVEKGGEIIPKIVGVNTDVRPAGTEEIRYIENCPS 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +++VR      G+  A H C     C  Q + RL+HFVSR A +IE +G +      +
Sbjct: 404 CGTKLVR------GEGEALHYCLNEDGCPPQIIGRLEHFVSRKAMDIESIGSETAILLHE 457

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   AD +TL +       ++       + S  N+ D+I   +  S ER ++ 
Sbjct: 458 ----AGLVNNVADFYTLTKEMILPLERMA------EKSAQNIIDAIENSKQQSFERLLYG 507

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG  +A+ LA ++ + ++  +            +  LI V  +G+ IAQ+I+ ++
Sbjct: 508 LGIRHVGNTVAKKLALHFGTMESLKKAT----------YDELILVEDIGEKIAQSIIAYF 557

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
               ++  ++      +S  +G+ +  +S ++  K  +FTG+L K  R +AQ+ V + G 
Sbjct: 558 DKEEHLELIDRLKTYGLSLELGKEQTPISDKLTGKTFLFTGSLTKFTRAEAQKLVEEHGG 617

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              + +S+  D +I G+  GSKL+KA++L + ++ E +FL L+ 
Sbjct: 618 KNLSAVSKNLDYLIAGEKAGSKLKKAEELKITVLTEGEFLELIN 661


>gi|222529603|ref|YP_002573485.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725]
 gi|254781543|sp|B9MK54|DNLJ_ANATD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222456450|gb|ACM60712.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725]
          Length = 673

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/704 (34%), Positives = 385/704 (54%), Gaps = 49/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            RK +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IRKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+       + +   + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELIGTSNFD---YVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G F+  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFIRGATRGDGNVGEDVTENLKTIRSIPLRLKEDI--SIVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  +    +   +   
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNIQWCEKEL-ETHA 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   
Sbjct: 236 QALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVA 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           GE A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN
Sbjct: 296 GETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP
Sbjct: 356 MDYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C + V++  +        A+RCTG + C A+    + HFVSRDA +I G+G+  +   F
Sbjct: 405 VCGADVIKFEDE------VAYRCTG-VECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLF 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+ PADI+ L+     +  +      FG  S  NL  +I   +N  L+R I+
Sbjct: 458 EK----GLIKTPADIYYLKFEDLVNLER------FGVKSTNNLLKAIQASKNRPLDRLIY 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIRH+G + A++LA++  S  +                  L+ +P  G+ +A+++V F
Sbjct: 508 ALGIRHIGQKAAKTLAEHISSIDDLFTITEE----------QLLCLPDFGEKMAKSVVTF 557

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++  +    +E L      ++   +   S  ++    V TG L K  R++A+E +  LGA
Sbjct: 558 FRQEQTRHLIERLKAAGVNTVSEKKAK-SDILKGYTFVLTGALSKYSRNEAKEILESLGA 616

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 617 KVTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660


>gi|238019226|ref|ZP_04599652.1| hypothetical protein VEIDISOL_01090 [Veillonella dispar ATCC 17748]
 gi|237863925|gb|EEP65215.1| hypothetical protein VEIDISOL_01090 [Veillonella dispar ATCC 17748]
          Length = 667

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/707 (32%), Positives = 367/707 (51%), Gaps = 46/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  +++ +++R F  R+ +           + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFANRVEKELG---HKPSAYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYL-ENAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEEGASIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +    F VN   R   T   ++   N     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLKSLESFKFSVNPHYRVCQTIDEVIETINYWDEKRHDLPYDTDGMVIKVNSFDDQEALG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R     PF+ P+ CP+
Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +  ++      G  S  NL  +I   +   L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAIADSKTRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F       +          + V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAAATIANVVKSMERFMTITKEEL----------VAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+  ++  +E L+           +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDSAHVEIIEGLIAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL+    
Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLKDLGE 665


>gi|227535466|ref|ZP_03965515.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227186876|gb|EEI66943.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 674

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/717 (33%), Positives = 366/717 (51%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAYPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    + + 
Sbjct: 64  --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+ L    P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLK--QPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +     Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIRD-----------KDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEACPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +            ++  AD++ L         K      F + S+ NL  +IN  R
Sbjct: 458 GPKIVAQLQAKH----LVKDVADLYHLTAADLAKLDK------FKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +        IA           VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIA----------DVPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+AIV +++       +         +  +         S +  K +V TG   +  R
Sbjct: 558 TIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               + +  LGA V+  +S+KTD++I GD  GSKL KAQ L V IMNE + L  L+ 
Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674


>gi|293401241|ref|ZP_06645385.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305367|gb|EFE46612.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 662

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/702 (33%), Positives = 375/702 (53%), Gaps = 47/702 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++ + +L +++  +   YY   +P + D+EYD   +    +   +P      DPN   
Sbjct: 2   DVQQRILALRKQLDTYAYEYYVLDQPSVPDAEYDQAYQELLKLEDTYPQY---RDPNSIT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +  KVTH    LSL   +N+EDL+ F  R+     K     + + +E K+D
Sbjct: 59  QRVGGVVLDAFTKVTHKQQMLSLSNAFNLEDLQAFDERVRSIVPK-----VSYVVELKMD 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ Y  G+FV A  RGDG  GEDV+  +R I +IP  +       +EVRGEV++ K
Sbjct: 114 GLAISLHYHDGRFVQAVTRGDGFVGEDVTNNVRTIASIPMHIE--RMGDVEVRGEVFMPK 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN +    G   +ANPRNAA+G +R+L+      R L+ F++          +  
Sbjct: 172 KSFAELNAQREKNGEDVFANPRNAAAGSIRQLDSKIAASRKLDAFLYYYEDALGAGIQTH 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ M  L   VN   R  N+   + S+  EM   R+ LPY+IDG+V KV+E +  +Q
Sbjct: 232 EEALETMEQLHIKVNPLRRVCNSMDEVWSFIQEMSEQRNDLPYEIDGMVIKVNELTAWEQ 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++PR+ I++KF  ++  T+LLDI + +GRTG +TP A L PV + G  ++ A LH
Sbjct: 292 LGTTVKAPRYAIAYKFPAEEVVTKLLDIVLTVGRTGRITPNAVLAPVRVAGTSVSAAQLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED IK            +DIR+ D V+V++AG++IP+VV  +++ R+     + FP  C
Sbjct: 352 NEDMIK-----------EKDIRIQDDVVVRKAGDIIPEVVGPLLDRRNGTQARYVFPKEC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S +VR  +       AAH C     C A+ +E + HF SRDA +I+ LG ++++FF
Sbjct: 401 PVCGSALVRLSDE------AAHYCIN-QDCPARVVESIIHFASRDAMDIDTLGDKKVEFF 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            K       +    DI+ L+  ++T       + GF + S   L D+I   +   LE  +
Sbjct: 454 HKE----GLLNTIEDIYHLKDHKETIL----QMEGFKERSYQKLIDAIEASKQNPLEDLV 505

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIR VG + A+ LAK++L+ +         +          + +  +GDI AQ+IV 
Sbjct: 506 YGLGIRQVGKKAAKVLAKHFLTMEKLMAASEEEL----------VAIKDIGDITAQSIVA 555

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F++ P+N+  ++ L           E    S    K +V TG+LQ++ R++A+E +  LG
Sbjct: 556 FFREPKNVELIDHLRGFGLRMDSEEEIIQESMFTGKTVVLTGSLQQMTRNEAKELLESLG 615

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           A VS  +S+KTD++I G+  GSKL KAQ LGV  M+E  FL 
Sbjct: 616 ANVSGSVSKKTDLVIYGEAAGSKLTKAQSLGVATMDEATFLQ 657


>gi|332705189|ref|ZP_08425270.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L]
 gi|332355932|gb|EGJ35391.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L]
          Length = 1092

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/728 (30%), Positives = 362/728 (49%), Gaps = 63/728 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L + +      YY    PI+ D+ YD L R    +   +P+L  S   + P  ++
Sbjct: 10  QRIQELRRLLQNASYAYYVLDNPIMADAIYDQLYRELQELETEYPELVTS---DSPTQRV 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS----IFFTLEPKI 134
           G +       V H+IP  SL+  +N+E+  ++  R  R               +  E KI
Sbjct: 67  GEKPATGFVSVRHNIPLYSLDNAFNLEEFSQWQERWQRHISGDISQDSGFNTEYVCELKI 126

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN------IPEIIEVR 188
           DG+ + + YE G  V    RGDG +GED++  +R I +IP  L+L+      +P ++EVR
Sbjct: 127 DGSALALTYENGILVRGVTRGDGSTGEDITQNVRTIRSIPLRLNLDQLNLDQLPALVEVR 186

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE ++  + F  +N E    G   +ANPRNAA+G LR+L P  +  R L FF + L   +
Sbjct: 187 GEAFLPLDVFERINQERAQAGEPLFANPRNAAAGTLRQLEPRIVAKRQLAFFAYTLHIPN 246

Query: 248 E--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           +             Q++ L+ ++ LGFPVN   +   +   +  YYN   + R  LPY  
Sbjct: 247 QDSSEEYTIPMPNCQWDALELLQKLGFPVNPHRQCCASLQDVQDYYNYWDARRQDLPYLT 306

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V K++ F +Q+QLG   + PRW I+ K+  ++A +R+  I + +GRTG +TP+A LE
Sbjct: 307 DGVVVKINAFGIQQQLGFTQKFPRWAIALKYPAEEAPSRVEAITVNVGRTGAVTPLAILE 366

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  +  A LHN DY+  L           D+RVGD V+V++AGE+IP+VV ++  
Sbjct: 367 PVQLAGTTVQRAALHNGDYVAQL-----------DLRVGDTVIVRKAGEIIPEVVRVLPE 415

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R   A+PF  P+ CP+C   +VR          A  RC    +C A     L H+ SR+
Sbjct: 416 LRPDHAKPFEMPTHCPVCSQPLVRPKGE------AVTRCINS-SCPAIVKGTLTHWASRN 468

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I GLG++ ++           +   AD++ L   Q  S  ++ +           L 
Sbjct: 469 ALDINGLGEKIVEQLVDQ----GLVTSVADLYDLTLDQLVSLERMGH------KLAQKLL 518

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           ++I K +     R ++ LGIRHVG+  A++L + + + +  AQ     I           
Sbjct: 519 NAIAKSKTQPWSRVLYGLGIRHVGSVNAQTLVQTFPTIEQLAQATVTDIEG--------- 569

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            +  +G  IAQ++  ++Q   N   +        ++  S      + +  +  K  V TG
Sbjct: 570 -IYGIGPEIAQSVWGWFQISSNQTLIARLREAGLQLEASTKTIALDQTQPLTGKTFVITG 628

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R  A++ +   G  V++ +S KTD ++VG++ GSKLEKAQ+LG+  + E Q L 
Sbjct: 629 TLPTLKRSDAKDLIQNAGGKVTSAVSAKTDYLVVGEDAGSKLEKAQKLGITQLTESQLLV 688

Query: 717 LLQQYNTT 724
             Q++  T
Sbjct: 689 KSQKFPAT 696



 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 119/253 (47%), Gaps = 23/253 (9%)

Query: 469  LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
               L H+ SR A +I GLGK+ ++           +   AD++ L         ++ ++ 
Sbjct: 860  KRPLTHWASRYALDINGLGKKIVEQLVDQ----GLVTSVADLYNLT------LEQLVSLN 909

Query: 529  GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
            G G      L ++I K +     R ++ LGIRHVG+  A++L + + + +  AQ     I
Sbjct: 910  GIGHKLAQKLLNAIAKSKTQPWSRVLYGLGIRHVGSVNAQTLVQTFPTIEQLAQATVTDI 969

Query: 589  AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SS 645
                        +  +G  IAQ++  ++Q   N   +  L +         +      S 
Sbjct: 970  EG----------IYGIGPEIAQSVWGWFQISSNQTLIARLREAGLQLEASTKTIALDKSL 1019

Query: 646  EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
             +  K  V TGTL  ++R  A++ +   G  V++ +S KTD ++VG++ GSKLEKAQ+LG
Sbjct: 1020 PLTGKIFVITGTLPTLKRSDAKDLIQNAGGKVTSAVSAKTDYLVVGEDAGSKLEKAQKLG 1079

Query: 706  VKIMNEEQFLFLL 718
            +  + E Q L LL
Sbjct: 1080 ITQLTESQLLDLL 1092



 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 20/173 (11%)

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
           Q   L H+ SR+A +I GLGK+ ++           +   AD++ L         ++ ++
Sbjct: 710 QQRALTHWASRNALDINGLGKKIIEQLVDQ----GLVTSVADLYDLT------LEQLVSL 759

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            G G      L ++I K +     R ++ LGIRHVG++ A++LAK + + +  AQ     
Sbjct: 760 KGIGYKLAQKLLNAIAKSKTQPWSRVLYGLGIRHVGSDKAKTLAKKFRNIEQLAQATIPD 819

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
           I            +  +G  IA+++ +++QN  N   ++ L +    SI +  
Sbjct: 820 IEG----------IYSIGPKIAKSVRDWFQNSSNQTLIDRLREAGLQSIDKRP 862


>gi|312870519|ref|ZP_07730638.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3]
 gi|311093981|gb|EFQ52306.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3]
          Length = 679

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/722 (32%), Positives = 378/722 (52%), Gaps = 51/722 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P++ L++  A++E++ L +++      YY+   P + D  YD   +R   +   FP+
Sbjct: 3   KPTPVDQLTLAAAKQEIAPLREQLIKWGQEYYEQDNPSVEDYVYDRAYQRLVELEQRFPE 62

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L  S   + P   +GG     L KVTH IP LS+  +++I++L  F  R           
Sbjct: 63  LKTS---DSPTQHVGGGPTSELTKVTHEIPMLSMGDVFSIDELMDFNQRQQD--NGDVSV 117

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           +  + LE KIDG  +++ YE G+ V  + RG+G+ GEDV+A +  I +IP  L    P  
Sbjct: 118 TPEYNLELKIDGLSLSLVYENGRLVQGSTRGNGNIGEDVTANVMTIKSIPHQLPE--PLS 175

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL 243
           +E RGE Y+ K  F+ LN E  A G   +ANPRNAA+G LR+L+P    R  L  F++ +
Sbjct: 176 LEFRGECYMPKESFVKLNQEREAAGLSVFANPRNAAAGSLRQLDPQVTARRDLATFMYYV 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            +  ++  + Q   L +MR LGF VN   R  +    I  Y  E  + R  L Y IDG+V
Sbjct: 236 PEYQKLGVRTQAAALDRMRELGFSVNPHNRVVHNRQEITDYVEEYTAQRDQLSYGIDGIV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++   +  LG   + PRW I++KF  ++ +T + DI   +GRTG +TP A ++PV +
Sbjct: 296 EKVNDLDTENALGNTVKVPRWEIAYKFPPEEQATVVRDIVWTVGRTGNVTPTAVMDPVQL 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A+LHN DY+             +DIR+GD V + +AG++IP++  + + +R  
Sbjct: 356 AGTTVSRASLHNPDYL-----------SEKDIRLGDTVYLHKAGDIIPEISRVDLKKRPA 404

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+QP+  P+ CP+C S +V   +        A RC   + C AQ  E L HF SR+A NI
Sbjct: 405 DSQPYQVPTTCPVCGSDLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRNAMNI 457

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG + +   +  E     +   AD+++L   Q  +  K      FGD S  NL  SI 
Sbjct: 458 DGLGPKIIQQLWDKE----LVHDVADLYSLTHDQLLTLDK------FGDKSAANLLTSIA 507

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             RN S+ER +F LGIRHVGA+ AR + +++ S         + +A           V  
Sbjct: 508 NSRNNSVERLLFGLGIRHVGAKAARLIMEHFQSLDRLLTASADEVAA----------VDG 557

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTLQ 659
           +G  I  ++  ++ N +    V+ L + V  +   H         SE   +++V TG L+
Sbjct: 558 IGPTIGDSVQTYFANEQVKKLVDEL-RAVGVNFDYHGSVVPAATDSEWNGRRVVLTGKLE 616

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R  A+ ++   GA V+  +S+KTDI+I G   GSKL KAQ LG+ + +E +F   ++
Sbjct: 617 ELTRADAKHWLEAHGAKVTGSVSKKTDIVIAGTAAGSKLTKAQDLGITVWDEARFAQAMK 676

Query: 720 QY 721
           + 
Sbjct: 677 EE 678


>gi|260426307|ref|ZP_05780286.1| DNA ligase, NAD-dependent [Citreicella sp. SE45]
 gi|260420799|gb|EEX14050.1| DNA ligase, NAD-dependent [Citreicella sp. SE45]
          Length = 754

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/758 (40%), Positives = 442/758 (58%), Gaps = 60/758 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +EAL+  QAR EL+ L + ++  +  Y+    P I D++YDALK R  AI   FP+L 
Sbjct: 9   IEVEALTETQARDELARLAEVLAQANRAYHTEDAPEISDADYDALKLRNIAIEERFPELK 68

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    + P  ++G  +     KV HS   +SL   +  +++  F   I R+    DD  +
Sbjct: 69  RE---DSPSEQVGAPLAEGFAKVRHSQRMMSLANAFADDEVTDFDRGIRRYLGLADDARL 125

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I  IP  L    PE++E
Sbjct: 126 PFTAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDDIPATL-EGAPEVLE 184

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN+   A G K +ANPRNAA+G LR+L+      R L FF +  G+
Sbjct: 185 VRGEVYMSHEDFAALNERQEARGGKRFANPRNAAAGSLRQLDAAITRERPLRFFAYAWGE 244

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE  A  Q   ++++  LGF  N   R  +    ++++Y ++++ R+TL YDIDG+VYK
Sbjct: 245 VSEPLATTQMGAIERLEALGFQTNPLTRLCDGPQEMLAHYAQIEAQRATLGYDIDGVVYK 304

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 305 VDDLALQQRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG 364

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI G DASG  +R G+DIRVGD V V RAG+VIPKV D+ +++R  +A
Sbjct: 365 VVVSNATLHNEDYIAGRDASGNPIRDGKDIRVGDWVQVYRAGDVIPKVADVDLDKRPEEA 424

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P++FP  CP C S  +R+      +  A  RCTGGL C AQ +E+LKHFVSR AF+IEG
Sbjct: 425 EPYAFPQTCPECGSEAIRE------EGDAVRRCTGGLVCPAQAVEKLKHFVSRAAFDIEG 478

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F +       I  PA+IFTL+ R  +   +++N  G+G+ S  NL+D+I++R
Sbjct: 479 LGAKQVEQFHRD----GWISEPAEIFTLRTRYGSGIQQLKNREGWGEKSAQNLFDAIDER 534

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN------------- 592
           R I L R IFSLGIRHVG  +A  LA++Y S+    + ++                    
Sbjct: 535 RTIGLGRVIFSLGIRHVGEVVANDLARHYASWDKLIEAVDAARPAAERYRQAETAVEAER 594

Query: 593 -------------------------------DDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
                                            W  L+ +  +G  +A ++V        
Sbjct: 595 KTAAAEGRRARLKETRDAAWEAEPPVSAGARAAWEDLVGIDGIGQTVAVSLVTSLGQTTE 654

Query: 622 ICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
             +V+ L+ E+ +           S +  K +VFTG L+K+ R +A+     LGA VS  
Sbjct: 655 RASVDRLIAELRTIEAPERPLTDGSPVAGKTVVFTGALEKMTRAEAKARAEALGAKVSGS 714

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S+KTDI++ G   GSK  KA++LG+++M+E+ +L L+
Sbjct: 715 VSKKTDIVVAGPGAGSKEAKARELGIELMDEDAWLALI 752


>gi|262379150|ref|ZP_06072306.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
 gi|262298607|gb|EEY86520.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
          Length = 682

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/708 (36%), Positives = 382/708 (53%), Gaps = 47/708 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L Q I+ H+  YY   +P I D+EYD+L  +  A+   +PDL +++ P     ++G
Sbjct: 14  QMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDTP---TRRVG 70

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+       V H++P LSL  ++N EDL  F  R+           + + +E K+DG  I
Sbjct: 71  GQALSKFMSVRHAVPMLSLGNVFNKEDLFAFARRVEERLP---GQQVKYEVELKLDGLAI 127

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISKN 196
           ++ YE G+ V    RGDG +GED++  ++ I  +P+ L      IP+++EVRGEV I K 
Sbjct: 128 SLWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSDQAAIPKLLEVRGEVLIPKT 187

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQ 254
            FL LN E  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +   E      
Sbjct: 188 GFLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGIAQCEPEHHLNSM 247

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +R LGF +       ++   +   Y ++   R+ L  +IDG+V KVD    QKQ
Sbjct: 248 TESLHWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVDSLKQQKQ 307

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R PRW  ++KF    A T + +ID Q+GRTGILTPVARL PV +GG  ++N TLH
Sbjct: 308 LGFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVTVSNVTLH 367

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I  L           D+R+GD V V R G+VIPKV  +    R   A+  + P  C
Sbjct: 368 NIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEVINLPETC 416

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S VV           A  RC+G L C+AQ++E ++HFVSR A +IEGLG + ++  
Sbjct: 417 PVCASPVVMPEGE------ALARCSGELYCAAQRIESIRHFVSRKAMDIEGLGDRWVESL 470

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     ++  +DI+ L + + T       I   G+ SV NL ++I + +  +L RFI
Sbjct: 471 LHLE----LLKDVSDIYHLHQHRNTLL----GIEKMGEKSVQNLINAIEQSKKTTLARFI 522

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   AR LA  + + +   Q           D  SL +VP VGDI A+ I +
Sbjct: 523 YALGIRGVGETTARMLANSFQTLEALQQA----------DVDSLKKVPDVGDITAEWIYD 572

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F++   N+  ++ L             +    +  +  V TGTL+ + R +A + +  LG
Sbjct: 573 FFRAEHNLEVIDRL-LAAGIHWDAPIASTRQPLNGESWVLTGTLEHLTREQATQMLQALG 631

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A VS  +S KT  ++ G+  GSKLEKAQ+L ++ +NE+QF+ L++ Y 
Sbjct: 632 ARVSGSVSAKTKCVVAGEKAGSKLEKAQKLNIQTLNEKQFIELMETYG 679


>gi|186680717|ref|YP_001863913.1| NAD-dependent DNA ligase LigA [Nostoc punctiforme PCC 73102]
 gi|254781381|sp|B2J3P0|DNLJ_NOSP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|186463169|gb|ACC78970.1| DNA ligase, NAD-dependent [Nostoc punctiforme PCC 73102]
          Length = 678

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/713 (32%), Positives = 367/713 (51%), Gaps = 54/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K    L Q +      YY    PI+ DS YD L R    +   +P+L     P+ P  ++
Sbjct: 9   KRTEELRQLLQQASYAYYVLDTPIMEDSVYDQLYRELQQLEIQYPELTA---PDSPTQRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G         V H+IP  SLE  +NI++L+ +  R  R   K D  S+ +  E KIDG+ 
Sbjct: 66  GERPATQFTSVRHNIPLYSLENAFNIDELQGWDQRWRRQVPKID--SVEYVTELKIDGSA 123

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISK 195
           + + Y+ G  V    RGDG  GED++  +R I +IP  L    L I E +EVRGE ++  
Sbjct: 124 LALTYQDGILVRGTTRGDGVMGEDITQNVRTIRSIPLRLNFEGLEILERVEVRGEAFLPL 183

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTSEIFA 251
             F  +N+E    G + +ANPRNAA+G LR+L+   +  R L FF + L   G+     A
Sbjct: 184 EVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVAKRRLAFFGYTLHIPGRDDTSIA 243

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q+E L+ +  +GF VN   +   +   +  YY    + R  LPY  DG+V K++ F L
Sbjct: 244 NTQWEALELLEKMGFQVNPNHKLCASIAEVAKYYEYWDTERLNLPYMTDGVVVKLNSFKL 303

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG   + PRW I+ K+  ++A TR+ +I + +GRTG LTP+A + PV + G  ++ A
Sbjct: 304 QEQLGFTQKFPRWAIALKYPAEEAPTRVENIAVNVGRTGALTPLAEMRPVQLAGTTVSRA 363

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           DIR+GD V+V++AGE+IP+VV ++   R  + +PF  P
Sbjct: 364 TLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVLKELRPAETEPFVMP 412

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C   VVR+         A  RC    +C+A     ++H+VSRDA +I+GLG++ +
Sbjct: 413 THCPVCDQAVVRESGE------AVTRCVNA-SCAAILKGSIEHWVSRDALDIKGLGEKLV 465

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       +   AD++ L   +  +  ++         S   L D+I + +N    
Sbjct: 466 HQLVDKV----LVHSVADLYELTAEKLCALERMGQ------KSAEKLVDAIAQSKNQPWS 515

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRHVG+  A+ L + Y + +  A    + I            +  +G  IAQ+
Sbjct: 516 RVLYGLGIRHVGSVNAQLLTQKYFTVEQLATAKQSDIEG----------IYGIGAEIAQS 565

Query: 612 IVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           + ++++   N   +E L  E     +P   +   + +     K  V TGTL  ++R +A+
Sbjct: 566 VYQWFRIDANQRLIERLQAEGLQLTAPEETKAFGDGNQIFAGKTFVVTGTLPTLKRDEAK 625

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + + G  V+  +S+KTD ++VG++ GSKLEKA  LG+  ++E Q L +L +
Sbjct: 626 ALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLEKALSLGITQLSEAQLLEMLNE 678


>gi|301066103|ref|YP_003788126.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang]
 gi|300438510|gb|ADK18276.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang]
          Length = 674

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/717 (33%), Positives = 366/717 (51%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    + + 
Sbjct: 64  --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+ L    P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLK--QPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +     Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIRD-----------KDIRIGDTVMLHKAGDIIPEVSRVLVAKRPVDTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEVCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +            ++  AD++ L         K      F + S+ NL  +IN  R
Sbjct: 458 GPKIVAQLQAKH----LVKDVADLYHLTAADLAKLDK------FKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +        IA           VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIA----------DVPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+AIV +++       +         +  +         S +  K +V TG   +  R
Sbjct: 558 TIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               + +  LGA V+  +S+KTD++I GD  GSKL KAQ L V IMNE + L  L+ 
Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674


>gi|327475239|gb|AEA77214.1| DNA ligase [Bacillus sp. 15.4]
          Length = 668

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/710 (34%), Positives = 389/710 (54%), Gaps = 53/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I+ A ++++ L   ++ ++  Y+   KP + D+EYD +     AI + FP+L  +   
Sbjct: 1   MDIKSAEQKVAELHNLLNQYNYEYHVLDKPSVPDAEYDRVMNELIAIENKFPELRTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    +  KV H  P LSL   +N EDLR F  ++ +       +   +  E
Sbjct: 58  DSPTQRVGGSTLQAFEKVQHRTPMLSLGNAFNKEDLRDFDRKVRQA----AGDDYSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G F   A RGDG  GED++A ++ I +IP  L +  P  +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGLFRQGATRGDGTVGEDITANLKTIKSIP--LRIPEPMTMEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  F ALN        +P+ANPRNAA+G LR+L+P     R L+ +++ +    E  
Sbjct: 172 FMPKRSFEALNKAKEEREEEPFANPRNAAAGSLRQLDPRIAASRNLDIYLYSIADVGETG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L  +   GF  N   ++  T   ++ Y       R  L YDIDG+V KVD   
Sbjct: 232 VVSHSSGLDLLDKFGFKTNKERKKCQTIDEVIEYVEGWVERRPDLQYDIDGIVIKVDSLE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  A+SPRW I++KF  ++  T+L +I++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 LQEQLGTTAKSPRWAIAYKFPAEEVVTQLKEIELSVGRTGVVTPTAILEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DI++GD V+VK+AG++IP+VV+++   R    + F  
Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDYVVVKKAGDIIPEVVNVLEERRTGGEKDFLM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PEGCPECESGLVRLEGE------VALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   FK       I   ADI+ L+R Q     ++      G+ SV NL ++I   +  SL
Sbjct: 454 ISQLFKE----GLIEDVADIYRLERDQLLQLERM------GEKSVDNLLNAIEASKANSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVGA+ A++LA+ +        +I+ ++  + DD  +   +  +GD +A 
Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQEFG-------DIDTLMNASKDDLTA---INEIGDKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665
           A+V +++    +  +  L      +  +  K V +E        + +V TG ++++ R++
Sbjct: 554 AVVAYFEKEEAVELIGELRTAGVNTEYKGPKPVKAEEIDSYFAGRTVVLTGKMEQLGRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           A++ + +LG  V+  +S+KTD++I G+  GSKL KAQ+L ++I +EE+ L
Sbjct: 614 AKQKIEELGGKVTGSVSKKTDLLIAGEEAGSKLAKAQELDIEIWDEEKLL 663


>gi|28377923|ref|NP_784815.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1]
 gi|81631729|sp|Q88XQ0|DNLJ_LACPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28270757|emb|CAD63662.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1]
          Length = 679

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/721 (32%), Positives = 381/721 (52%), Gaps = 55/721 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            +++EQA  E ++L Q ++     YY    P + DS YD    R   +   FP L     
Sbjct: 7   TMTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQLV---T 63

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P   +GG +     KVTH IP LSL  +++  +L++F+ R     ++   + + +  
Sbjct: 64  PDSPTQLVGGTVKAGFDKVTHEIPMLSLGDVFSQAELQEFVDR----LEQNVGHPVDYNC 119

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G  V  + RG+G  GED++A I+ I +IP+ L+   P  I+VRGE
Sbjct: 120 ELKIDGLALSLRYEDGVLVQGSTRGNGTVGEDITANIKTIKSIPQRLT--RPLTIDVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
            Y+ K  F ALN+   A G   +ANPRNAA+G LR+L+   +  R L+ F++ +     +
Sbjct: 178 CYMPKAAFAALNERREAAGEPVFANPRNAAAGTLRQLDSRVVAERQLSTFMYNIADYEPL 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A+ Q +ML +   LGF +N   + A++   + SY +  ++ R  L Y IDG+V K +  
Sbjct: 238 TARTQSDMLTEFADLGFAINPDFKVAHSMADVFSYIDHYQNERPELAYGIDGIVIKANPL 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+ LG   + PRW I+ KF   +  T L D++  +GRTG++TP A +EPV + G  + 
Sbjct: 298 PLQRSLGATVKVPRWAIAFKFPPDEQPTLLKDVEWTVGRTGVVTPTAVMEPVQLAGTTVA 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DY+             +D+R+GD VL+ +AG++IP++  + + +R  DAQP  
Sbjct: 358 RASLHNPDYV-----------AAKDVRIGDTVLLHKAGDIIPEISSVDLAKRPKDAQPLV 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +V   +        A RC     C AQ  E L HF SR+A NI+GLG +
Sbjct: 407 IPTTCPSCGAPLVHLEDE------VALRCINP-KCPAQVQEGLVHFASRNAMNIDGLGPR 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   + +      +   A ++ L + Q  +  KI+      D S   L  +I++ R+ S
Sbjct: 460 IIAQLYANR----LVSDVAGLYRLTKAQLLTLDKIK------DKSAEKLLTAIDRSRDNS 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVGA++AR +A+++ + +         IA           +  +GD+IA
Sbjct: 510 LERLLFGLGIRHVGAKVARLIAQHFGTIEALMAASQEEIAA----------IDSMGDVIA 559

Query: 610 QAIVEFYQNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            A+V+++++      +              PS    E   +S    K++V TG L+   R
Sbjct: 560 NAVVQYFESDEVHTLIRELQAVNVNTTYQGPSATVAED-SNSWFAGKRVVLTGKLESFTR 618

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             A +++   GA V   +S+KTD++I G + GSKL+KAQQL + + +E +F   +++   
Sbjct: 619 PDATQWLQAHGATVMGSVSKKTDLVIAGSDAGSKLQKAQQLDITVWDEARFSETMREDAQ 678

Query: 724 T 724
            
Sbjct: 679 A 679


>gi|148544657|ref|YP_001272027.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016]
 gi|184154010|ref|YP_001842351.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112]
 gi|227363780|ref|ZP_03847887.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3]
 gi|325682991|ref|ZP_08162507.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A]
 gi|209572830|sp|A5VLG6|DNLJ_LACRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781354|sp|B2G8T9|DNLJ_LACRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148531691|gb|ABQ83690.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016]
 gi|183225354|dbj|BAG25871.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112]
 gi|227071137|gb|EEI09453.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3]
 gi|324977341|gb|EGC14292.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A]
          Length = 680

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/725 (33%), Positives = 384/725 (52%), Gaps = 50/725 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M ++Q  P++ L++++A+ E+  L  +++     YY+   P + D  YD   +R   +  
Sbjct: 1   MSEKQ-TPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L      + P  ++GG     L KV H IP LS+  +++IE+L  F  R      +
Sbjct: 60  QFPQLV---SADSPTQRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQRQQE--NR 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             +    + LE KIDG  +++ YE GK V  + RG+G  GEDV+A +R I ++P  L   
Sbjct: 115 DVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTANVRTIKSVPAELPE- 173

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            P  IEVRGE Y+ K  F  LN +  A G   +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 174 -PLSIEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELDTF 232

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ + +  +I  K Q E L +MR LGF VN   R  +    I  Y  E  + R  L Y I
Sbjct: 233 MYYVPEYQKIGVKTQAEALDRMRELGFNVNPNNRVVHNRDEIEKYIEEYTAQRDKLTYGI 292

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++   +  LG   + PRW I++KF  ++ +T + DI   +GRTG +TP A ++
Sbjct: 293 DGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAVMD 352

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY++            +DIR+GD V + +AG++IP++  + + 
Sbjct: 353 PVQLAGTTVSRASLHNPDYLR-----------EKDIRIGDTVYLHKAGDIIPEISKVDLT 401

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D+  +  P+ CP+C S +V            A RC   + C AQ  E L HF SR+
Sbjct: 402 KRPADSVEYEIPTKCPVCGSELVHLDGE------VALRCINPM-CPAQIKEGLAHFASRN 454

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +  E     I   A ++ L   Q  +  K      FG+ S  NL 
Sbjct: 455 AMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLTLDK------FGEKSTANLL 504

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            SI+  RN S+ER +F LGIRHVGA+ AR + +++    +  +           D   + 
Sbjct: 505 TSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFGDLDSLMKA----------DADEIS 554

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTG 656
            +  +G  I ++IV ++ N + +  ++ L +          R   N  SE   +++V TG
Sbjct: 555 AISGIGPTIGESIVTYFANQQVVKLIDELREVGVNFAYLGSRSNANPDSEWNGRRVVLTG 614

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L ++ R +A+ ++   GA V+  +S+KTDI+I G + GSKL KAQ LG+ + NE+QF  
Sbjct: 615 KLTEMTRGEAKSWLENHGAKVTESVSKKTDIVIAGADAGSKLTKAQNLGIDVWNEQQFSQ 674

Query: 717 LLQQY 721
            +++ 
Sbjct: 675 AMKEE 679


>gi|82701780|ref|YP_411346.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
 gi|123754406|sp|Q2YBB7|DNLJ_NITMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|82409845|gb|ABB73954.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
          Length = 707

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/729 (34%), Positives = 384/729 (52%), Gaps = 66/729 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  + +  L   I  H+  YY+   P I D+++D L R  + +    P+L     P+ 
Sbjct: 5   LSEISRHMRELRDAIELHNIRYYELDTPTIPDADFDKLFRELEELEQRHPELI---TPDS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H  P LSL   +   ++  F  R+ +         + + +EPK
Sbjct: 62  PTQRVGIPPLKAFPQVVHRTPMLSLSNAFTEGEVEAFDRRVRQSLG---IAQVEYAVEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVR 188
            DG  I++ YE G  V  A RGDG+ GEDV+  ++ I +IP  L        +P  +EVR
Sbjct: 119 FDGLAISLCYENGMLVSGATRGDGYIGEDVTLNLKTIRSIPLGLRAGDGSAEVPAFLEVR 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG--K 245
           GEV + K DF  LN +      K + NPRNAA+G LR+L+P     R L FF +G+G  +
Sbjct: 179 GEVLMLKADFERLNRQQREKNEKTFINPRNAAAGSLRQLDPCITANRNLRFFAYGIGVCE 238

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              +       +L  +  L FPV    R      G++ Y++E+  +R  L YDIDG VYK
Sbjct: 239 GGNVPHDTHSHLLDYLSSLRFPVMRERRTVTGVAGLLEYHHEINGLREQLSYDIDGTVYK 298

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+E   Q++LG  +R+PR+ ++HKF  ++A+T LL ID+Q+GRTG LTPVARL+PV +GG
Sbjct: 299 VNELEYQEKLGFVSRAPRFALAHKFPAQEATTELLGIDVQVGRTGALTPVARLKPVFVGG 358

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           A +TNATLHNED I+            +D+ +GDRV V+RAG+VIP+VV +    R  +A
Sbjct: 359 ATVTNATLHNEDEIRR-----------KDVMIGDRVTVRRAGDVIPEVVAVQKESRPSNA 407

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF  P  CP+C SR +R             RCTGGL C AQ+ + + HF SR A NI G
Sbjct: 408 KPFVMPEHCPVCGSRTIRLPGET------LTRCTGGLFCPAQRKQAILHFASRRAMNIHG 461

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + +D    +      IR PAD++ L      +  ++      G+ S  N+ + I K 
Sbjct: 462 LGDKLVDHLVDNAI----IRTPADLYKLGLAALAALDRM------GEKSAGNIINEIEKS 511

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +L RFI+SLGIR+VG   AR LA+Y+                   D  +L +V  VG
Sbjct: 512 KDTTLARFIYSLGIRNVGEATARDLARYFGGLDRLMDA----------DVETLQQVSDVG 561

Query: 606 DIIAQAIVEFYQNPRNICAVE---------------ALLKEVSPSIGRHEKNVSSEIENK 650
            ++AQ+I +F+    N   VE                     + S        SS+I  +
Sbjct: 562 PVVAQSIADFFGERHNREVVEQLRAAGIRWKEGAGTQTTDHAAGSAHPGAAAASSKIAGR 621

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGTL  + R +A+E +  +G  V+  +S+KTD ++ G + GSK +KA +LGV +++
Sbjct: 622 SFVLTGTLPTMSREEAREKIEAMGGKVAGSVSKKTDYVVAGADAGSKYDKALELGVALLD 681

Query: 711 EEQFLFLLQ 719
           E + + LLQ
Sbjct: 682 EAELIRLLQ 690


>gi|323143662|ref|ZP_08078336.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066]
 gi|322416595|gb|EFY07255.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066]
          Length = 696

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/726 (34%), Positives = 396/726 (54%), Gaps = 61/726 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
              L   ++ +   YY    PI+ DSEYD L R+ + +  A P +     P+ P  ++GG
Sbjct: 8   YKDLVALLNRYAKAYYVDDDPIVTDSEYDRLYRQLEIMEQADPTII---SPDSPTRRVGG 64

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +   +   VTH +P LSL  I+++ +L  F  RI  F     +  + +  EPK+DG  ++
Sbjct: 65  QALSAFASVTHRVPLLSLGDIFSVSELNDFNERICDF---THEEKVEYCAEPKLDGLAVS 121

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFL 199
           + YE G  V AA RGDG  GED++   + I  IP  L   N+P  ++VRGEV++ ++ F 
Sbjct: 122 LIYENGLLVKAATRGDGRVGEDITENAKTIKAIPLRLSGENVPSYLDVRGEVFMPRDGFE 181

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
             N+     G K +ANPRNAA+G LR+L+      R L F  + +G+ S      QY+ L
Sbjct: 182 KWNERARQNGGKVFANPRNAAAGSLRQLDSKITAKRPLTFNAYYIGECSNELPDTQYDRL 241

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             ++  G PVN  +++     G+  +YN++   R  L YDIDG+V KV+   +Q+ +G  
Sbjct: 242 MSVKGWGIPVNPLIKKVYGIKGLSDFYNDILQKRPGLNYDIDGVVLKVNSIPVQEDMGFT 301

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           AR+PRW I++KF  ++  TRLLD++ Q+GRTG +TPVARL+PV +GGA ++NATLHNED 
Sbjct: 302 ARTPRWAIAYKFPPEEEITRLLDVEFQVGRTGAVTPVARLDPVYVGGATVSNATLHNEDE 361

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCPIC 437
           I+ L+           + +GD V+V+RAG+VIP+V  +++  R  D  +P  FP+ CP C
Sbjct: 362 IRRLN-----------LMIGDYVIVRRAGDVIPQVAGVVLERREKDKVKPIVFPTECPEC 410

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S + R          A  RC+GGL C AQ  E + HFVSR+A +IEG G + ++    S
Sbjct: 411 GSLIERVKGE------AVARCSGGLVCPAQLRESVLHFVSRNAMDIEGFGDRIVEQLVLS 464

Query: 498 EDPAFSIRIPADIFTLQRRQQTST-------TKIENILGFGDVSVTNLYDSINKRRNISL 550
                 ++  AD+++L      S         +   +LG   ++   L  +I K R I+L
Sbjct: 465 GK----VKSIADLYSLGENDLASLVLDDGSPERKPRLLGM--ITAKKLKAAIEKSRTIAL 518

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI++LGIR VG   A +LA ++ +  +  +               L+++P +G ++A 
Sbjct: 519 NRFIYALGIREVGESTALTLATHFETLNDIMRA----------SVEDLMKLPDIGVVVAN 568

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI------------GRHEKNVSSEIENKKLVFTGTL 658
            I +F++ P N+  +E L+      +               +   S  +  +  V TGTL
Sbjct: 569 HIYDFFKEPHNLDIIERLVPSADIPLFSAGLTLLPCAQASVQTAQSMPLMGQTYVLTGTL 628

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R+KA+  +  LGA VS  +S+KT  +I G +PGSKL KAQ+LGVK+M E+ F+ LL
Sbjct: 629 SIMDRNKAKNLLQSLGAKVSGSVSKKTYAVIAGADPGSKLVKAQELGVKVMTEDDFIALL 688

Query: 719 QQYNTT 724
           +++  +
Sbjct: 689 KEHGLS 694


>gi|327475235|gb|AEA77212.1| DNA ligase [Exiguobacterium sp. EPVM]
          Length = 664

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/711 (33%), Positives = 386/711 (54%), Gaps = 52/711 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  + + ++ Q+++ +   YY   +P + D+EYD L      I   +P+L     P+ P 
Sbjct: 2   EMAERVEAIRQKLNQYGYEYYVLDRPSVPDAEYDRLMNELIEIETDYPEL---RSPDSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG    +  KVTH  P LSL  +++ E+L +++ RI +           F  E K D
Sbjct: 59  QRVGGAPLDAFVKVTHDTPMLSLGNVFSKEELVEWVDRIEKDLGYSP----LFVAELKFD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  ++++YE G+FV  A RGDG +GED++  +R I +IP  L+ ++    EVRGE Y+ K
Sbjct: 115 GLAVSLKYEDGRFVRGATRGDGTTGEDITQNLRTIRSIPLRLNEDV--TFEVRGEAYMPK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LNDE   +G   +ANPRNAA+G LR+L+      R L FF +GL  T ++ A   
Sbjct: 173 RSFEHLNDERERLGEPLFANPRNAAAGSLRQLDSKIAASRNLAFFAYGLVSTDDLVA-SH 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ +R LG  V+     A+T   +  Y     + RS LPY+IDG+V KV  +  Q+Q
Sbjct: 232 DESLEYLRHLGIAVSQEYTTAHTAEELWGYIETYVTKRSELPYEIDGIVIKVAGYEEQEQ 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW +++KF  ++  T + D+D  +GRTG +TP AR  PV++ G+ +T ATLH
Sbjct: 292 LGFTAKSPRWAVAYKFPAEEVVTTIEDVDFSVGRTGKVTPRARFAPVSVAGSTVTYATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED+I             +D+ +GDRV++K+AG+VIP VV  +V+ER  +     FP+ C
Sbjct: 352 NEDFI-----------LEKDLHIGDRVVIKKAGDVIPAVVSALVSERTGEETEIVFPTHC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C+S +VR          A HRC     C AQ LE L HFVSR A NI+GLG++ +   
Sbjct: 401 PACESELVRLEGE------ADHRCVNP-ECPAQLLEGLIHFVSRPAMNIDGLGEKVITQL 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             S+     +   AD++ L R    +  ++      G+ SVTNL  +I++ +  SLER +
Sbjct: 454 HASD----LVHNVADLYRLDRDALLALDRM------GETSVTNLLAAIDQSKQNSLERVL 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG + A  +A+ + + +          A        L  +  +G  +A++I  
Sbjct: 504 FALGIRLVGQKAAVLIAERFETME----------AVMEASIDELTSIDGIGTKMAESISL 553

Query: 615 FYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +++ P     V  L +    ++    +   +  + +  K +V TG L ++ R +A + + 
Sbjct: 554 YFEKPEARDLVRELGEAGVNLTFKGAKRSVDTDAPLAGKTVVLTGKLHEMTRGEAGKKLE 613

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S+ TD+++ G+  GSKL KA+ LG+++ +E   L  L + +
Sbjct: 614 LLGASVTGSVSKNTDLLVAGEKAGSKLTKAESLGIEVWDEAALLAFLAEQS 664


>gi|254283004|ref|ZP_04957972.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
 gi|219679207|gb|EED35556.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
          Length = 675

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/710 (34%), Positives = 379/710 (53%), Gaps = 51/710 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            E++ L + I      YYQ   P + D++YDA  RR   +  A P+LA    P+ P  ++
Sbjct: 7   AEVAELRERIKRWALEYYQQDAPSVPDADYDAAFRRLHELESAHPELA---SPDSPTRRV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH +P LSL+  ++ +D   F  R+     K   N+I +  EPK+DG  
Sbjct: 64  GAQPIAGFEQVTHRLPMLSLDNAFSSDDFDAFDQRVSERLGK---NAIDYCCEPKLDGIA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           +++ YE+GK   AA RGDG  GED++  +R I  IP  L     P+++EVRGEV++ +  
Sbjct: 121 VSLIYERGKLTQAATRGDGVVGEDITHNVRTIEAIPLALEGGGFPDVLEVRGEVFMPRVG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSE---IFAKG 253
           F  LND   A G K + NPRNAA+G LR+L+P    R  L+F  + +G  S         
Sbjct: 181 FERLNDRARASGDKLFVNPRNAAAGSLRQLDPRVTARRPLDFCCYSVGFCSGQIRDLGDR 240

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              ++ ++   G PV+  ++ A       +YY  +   R  LP+DIDG+V+KVD+   Q+
Sbjct: 241 HSAVIARLGEWGLPVSQWMKVATAAEACEAYYQWLAGERDGLPFDIDGIVFKVDDLESQR 300

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +R+PRW I+ KF  ++  TR+LD++ Q+GRTG +TPVARL+PV +GG  ++NATL
Sbjct: 301 ILGFVSRAPRWAIARKFPAQEQRTRVLDVEFQVGRTGAITPVARLDPVFVGGVTVSNATL 360

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L            + +GD V+++RAG+VIP+VV +I+ ER    +   FP  
Sbjct: 361 HNADEIERL-----------GLCIGDSVIIRRAGDVIPQVVAVILEERDESVRAVVFPDH 409

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S V R          AA RC GGL C AQ+   L+HF SR A +I+GLG++ ++ 
Sbjct: 410 CPACGSEVERVEGE------AAFRCVGGLICPAQRRASLQHFASRKAMDIDGLGEKVIEQ 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     I   A ++ L      S  ++      G+ S  NL  +++K +  +L RF
Sbjct: 464 LVARE----LITDIAGLYGLDLETLVSLDRM------GEKSAENLVAALDKSKATTLARF 513

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGIR VG   AR+LA ++ S          ++            V  VG ++A  I 
Sbjct: 514 IYALGIREVGESTARALAMHFGSLDAIEGAGQEVLE----------EVDDVGPVVATHIR 563

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYV 670
            F+    N   +EAL++         +   + E   +  +  V +G L+ + R +A + +
Sbjct: 564 NFFSEAANRRTIEALIEAGVHWPDPVDSMAAGEEGALAGESWVVSGKLESMSRDQASDRL 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             LGA V+  +S KT  ++ G   GSKL+KA+ LG+ +++E  FL LL++
Sbjct: 624 RSLGARVTGGVSNKTTRLLAGPGAGSKLKKAESLGLPVLDESDFLALLEE 673


>gi|191637997|ref|YP_001987163.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
           casei BL23]
 gi|254781352|sp|B3WD54|DNLJ_LACCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190712299|emb|CAQ66305.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
           casei BL23]
 gi|327382073|gb|AEA53549.1| DNA ligase [Lactobacillus casei LC2W]
 gi|327385217|gb|AEA56691.1| DNA ligase [Lactobacillus casei BD-II]
          Length = 674

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/717 (33%), Positives = 366/717 (51%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    + + 
Sbjct: 64  --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+ L    P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLK--QPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +     Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIRD-----------KDIRIGDTVMLHKAGDIIPEVSRVLVAKRPVDTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEACPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +            ++  AD++ L         K      F + S+ NL  +IN  R
Sbjct: 458 GPKIVAQLQAKH----LVKDVADLYHLTAADLAKLDK------FKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +        IA           VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIA----------DVPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+AIV +++       +         +  +         S +  K +V TG   +  R
Sbjct: 558 TIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               + +  LGA V+  +S+KTD++I GD  GSKL KAQ L V IMNE + L  L+ 
Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674


>gi|255318624|ref|ZP_05359855.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
 gi|255304306|gb|EET83492.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
          Length = 678

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/708 (36%), Positives = 382/708 (53%), Gaps = 47/708 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L Q I+ H+  YY   +P I D+EYD+L  +  A+   +PDL +++    P  ++G
Sbjct: 10  QMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDT---PTRRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+       V H++P LSL  ++N EDL  F  R+           + + +E K+DG  I
Sbjct: 67  GQALSKFMSVRHAVPMLSLGNVFNKEDLFAFARRVEERLP---GQQVKYEVELKLDGLAI 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISKN 196
           ++ YE G+ V    RGDG +GED++  ++ I  +P+ L      IP+++EVRGEV I K 
Sbjct: 124 SLWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSDQAAIPKLLEVRGEVLIPKT 183

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQ 254
            FL LN E  A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +   E      
Sbjct: 184 GFLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGIAQCEPEHHLNSM 243

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +R LGF +       ++   +   Y ++   R+ L  +IDG+V KVD    QKQ
Sbjct: 244 TESLHWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVDSLKQQKQ 303

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R PRW  ++KF    A T + +ID Q+GRTGILTPVARL PV +GG  ++N TLH
Sbjct: 304 LGFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVTVSNVTLH 363

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I  L           D+R+GD V V R G+VIPKV  +    R   A+  + P  C
Sbjct: 364 NIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEVINLPETC 412

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S VV           A  RC+G L C+AQ++E ++HFVSR A +IEGLG + ++  
Sbjct: 413 PVCASPVVMPEGE------ALARCSGELYCAAQRIESIRHFVSRKAMDIEGLGDRWVESL 466

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     ++  +DI+ L + + T       I   G+ SV NL ++I + +  +L RFI
Sbjct: 467 LHLE----LLKDVSDIYHLHQHRNTLL----GIEKMGEKSVQNLINAIEQSKKTTLARFI 518

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   AR LA  + + +   Q           D  SL +VP VGDI A+ I +
Sbjct: 519 YALGIRGVGETTARMLANSFQTLEALQQA----------DVDSLKKVPDVGDITAEWIYD 568

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F++   N+  ++ L             +    +  +  V TGTL+ + R +A + +  LG
Sbjct: 569 FFRAEHNLEVIDRL-LAAGIHWDAPIASTRQPLNGESWVLTGTLEHLTREQATQMLQALG 627

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A VS  +S KT  ++ G+  GSKLEKAQ+L ++ +NE+QF+ L++ Y 
Sbjct: 628 ARVSGSVSAKTKCVVAGEKAGSKLEKAQKLNIQTLNEKQFIELMETYG 675


>gi|162148970|ref|YP_001603431.1| DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
 gi|190359260|sp|A9H0L6|DNLJ_GLUDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161787547|emb|CAP57143.1| putative DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 695

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/716 (39%), Positives = 414/716 (57%), Gaps = 34/716 (4%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +    L+  QA  EL  L Q+I   D  YY+   P + D+EYDAL++R  AI   FPDL 
Sbjct: 1   MDPSELTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPDLR 60

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125
           R+   + P   + G  + +  +  H +P LSL+ ++  ED   F+TR  RF    DD + 
Sbjct: 61  RA---DSPSLHVSGAPSAAFGRHRHLVPMLSLDNVFGREDFESFVTRAARFLGLNDDQAR 117

Query: 126 -IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + F  EPKIDG  I++ YE G+FV    RGDG  GEDV+A +R +  +P  L    P +
Sbjct: 118 ALRFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDVPLRLKGPAPAL 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGL 243
           IE+RGEV++SK  FL++N      G+KP+ANPRNAA+G LR+L+P    R  L+ F +  
Sbjct: 178 IEIRGEVFLSKPAFLSINAAQAEAGQKPFANPRNAAAGSLRQLDPNITARRPLSLFAYAQ 237

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G +S+  A   ++ L+++R  GF VN       +     ++ + +   RS L YDIDG+V
Sbjct: 238 GFSSDRVADTHWDYLERLRQWGFTVNPLSCVVESAEAAEAFMDRIARERSGLEYDIDGVV 297

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+ +LQ +LG   R+PRW I+ KF  +QA TRL  IDIQ+GRTG LTPVA LEPVN+
Sbjct: 298 YKVDDLALQDRLGFVGRAPRWAIAWKFPAEQAITRLTRIDIQVGRTGALTPVAILEPVNV 357

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV--NER 421
           GG ++T ATLHNED I             +D+RVGD V ++RAG+VIP+++ ++    + 
Sbjct: 358 GGVIVTRATLHNEDEIAR-----------KDVRVGDLVQIQRAGDVIPQILGVVPPGADA 406

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P  + F FP  CPIC +R  R             RCTGGL C AQ +ERL HFVSRDAF
Sbjct: 407 PPRGEAFIFPHTCPICGARAERPPGE------VVWRCTGGLTCPAQVVERLIHFVSRDAF 460

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+GLG++ +  F         ++ PADIF L   +    T+     G+G VS  NL  S
Sbjct: 461 DIDGLGERTITEFHAD----GLLKTPADIFRLPDHEADIATR----EGWGTVSARNLTAS 512

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +  R+ I L RFI++LGIR +G   AR LA++Y SY ++ +++       +D+ L+L  +
Sbjct: 513 VRARQTIPLARFIYALGIRRIGTSNARLLARHYGSYTHWREQMLRATTIGSDERLALGSI 572

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  IA  +  F+    N+  ++ L   ++ +I   +      +  K +VFTGTL  +
Sbjct: 573 TGIGGAIADELAAFFMEAHNLETLDDLTAMLT-AIEDEDLPAQGHLSGKTVVFTGTLTTM 631

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            R +A+    +LGA V+  +S+KTD++++G + GSK  KA +LG+  ++EE +  L
Sbjct: 632 TRPEAKAIAERLGARVTDSVSKKTDLVVLGADAGSKARKAAELGIDTLDEEGWREL 687


>gi|269798060|ref|YP_003311960.1| DNA ligase, NAD-dependent [Veillonella parvula DSM 2008]
 gi|269094689|gb|ACZ24680.1| DNA ligase, NAD-dependent [Veillonella parvula DSM 2008]
          Length = 667

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/709 (32%), Positives = 374/709 (52%), Gaps = 46/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  ++N +++R F  R+ +           + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFGNRVEKELG---HKPSSYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLFL-DNAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P     R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITANRNLAFFAYAIGSEVGANIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +    F VN   R   T   ++   +     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLKSLENFKFSVNPHYRVCKTIDEVIEAIDYWGDKRHELPYDTDGMVIKVNNFDDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP+  LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPIGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R+    PF+ P+ CP+
Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +  ++      G  S  NL  +IN  ++  L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAINDSKSRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F     + +          + V  +G  +A +I+E+ 
Sbjct: 509 LGIRLIGSKAATTIANVVKSMERFMTITKDEL----------VAVEEIGPTMADSIIEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P ++  +E L +          +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPSHVAIIEGLTQAGLKMTVDVVEAAGNQLEGEIVVLTGKLEVMGRTEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           V+  +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL++    +
Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVLNEEEFVELLKELGEDI 667


>gi|238026897|ref|YP_002911128.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
 gi|237876091|gb|ACR28424.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
          Length = 747

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/786 (32%), Positives = 389/786 (49%), Gaps = 107/786 (13%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P +     Q  +  + L QE+   +  YY   +P +LD+EYD L R    I    PD
Sbjct: 3   RTTPADP-PASQPSERAAWLRQELERANHAYYVLDQPELLDAEYDRLFRELQQIEAEHPD 61

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD- 123
                 P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K  D 
Sbjct: 62  FI---TPDSPTQRVGGEAADGFTPVLHDAPMLSLNNGFTDEDIAAFDKRVADALGKAVDL 118

Query: 124 ----NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
                 + +  E K DG  I++RY  GKF  AA RGDG +GEDV+  +R I +IP  L  
Sbjct: 119 AGTAEPVEYACELKFDGLAISLRYVHGKFTQAATRGDGTTGEDVTENVRTIKSIPLTLKG 178

Query: 180 N-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237
              P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+      R L+
Sbjct: 179 KHPPALLDVRGEVLMYKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKVTAQRPLS 238

Query: 238 FFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           FF +G+G             +L     LG PVN          G++ ++ ++   R  LP
Sbjct: 239 FFAYGIGVLDGAPMPDTHSGLLDWYESLGLPVNRERAVVQGAEGLLDFFRKVGEKREALP 298

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           YDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A TRL+ I++Q+GRTG +TPVA
Sbjct: 299 YDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEARTRLVAIEVQVGRTGAITPVA 358

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD- 415
           RLEPV +GGA +TNATLHNED ++            +DIRVGD V+V+RAG+VIP+VV  
Sbjct: 359 RLEPVFVGGATVTNATLHNEDEVRR-----------KDIRVGDTVIVRRAGDVIPEVVGR 407

Query: 416 -------IIVNER-----------------------------HPDAQPFSFPSFC----- 434
                  + V  R                               D +       C     
Sbjct: 408 DGPHAMQVRVRFRGVRTVARRNRLRAAASSGRPMTWKPRLLKPTDRRGIRVRRGCLRPSL 467

Query: 435 ---------------PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
                          P+C SR+ R  +       A  RCTGGL C AQ+ + L HF  R 
Sbjct: 468 FEFVEQEPFRMPTECPVCGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRR 521

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I+GLG++ +D   +       +R PAD+F L      +  +      F + S  NL 
Sbjct: 522 ALDIDGLGEKIIDQLVEQN----LVRTPADLFHLGFATLAALDR------FAEKSAQNLL 571

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           DS+ K R+ +L RFI++LGIRHVG   A+ LAK++ + Q       + +          +
Sbjct: 572 DSLEKARHTTLARFIYALGIRHVGESTAKDLAKHFGALQPIMDASIDAL----------L 621

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTL 658
            V  VG ++A+++ +F+    N   +  L ++V  P      +     +  K +V TGTL
Sbjct: 622 EVNDVGPVVAESLHQFFAEEHNRTVIAQLREKVDWPEGPPAPREPQGVLAGKTVVLTGTL 681

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A+  +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL
Sbjct: 682 PTLSRDEAKALLEAAGAKVTGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMHQLL 741

Query: 719 QQYNTT 724
           +  + +
Sbjct: 742 KGESPS 747


>gi|218289368|ref|ZP_03493602.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
 gi|218240474|gb|EED07655.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
          Length = 684

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/721 (33%), Positives = 370/721 (51%), Gaps = 56/721 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ALS+E+AR     L ++I YH+  YY    P I D+E+DAL R    +   +P+L    D
Sbjct: 9   ALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELV---D 65

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P  P  ++G        KV H +P LSL   ++ EDL  +  R+ +       + + +  
Sbjct: 66  PASPTQRVGAPALEGFAKVVHEVPMLSLSNAYSTEDLLDWDRRVRQAVG----DDVRYVC 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + +RY+ G+ V  A RGDG  GED++A IR I  +P  LS   P  +EVRGE
Sbjct: 122 ELKVDGLAVALRYQDGRLVLGATRGDGSVGEDITANIRTIRNVPLELSE--PVSLEVRGE 179

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
            Y+ K +F+ LN+     G   +ANPRNAA+G LR+L+P     R L   V+ L +    
Sbjct: 180 AYMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEAH 239

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +   + L  +  LG P +           +++Y       R  LPY  DG+V KVD  
Sbjct: 240 GCETHSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVDSL 299

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG  A+SPRW I++K+A +QA T L  I++ +GRTG++TP A  +PV + G  ++
Sbjct: 300 ALQSRLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTTVS 359

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED ++            +DIRVGD ++V++AG++IP+V+  +   R      F 
Sbjct: 360 RASLHNEDLVR-----------EKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEFR 408

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C SR+VR           A RC     C A   E L HF SRDA NIEGLG+Q
Sbjct: 409 MPETCPQCGSRLVRLDGE------VAWRCINP-DCPALLREGLIHFCSRDAMNIEGLGEQ 461

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +            +R  AD++ L++       ++      GD     L  +I + +  S
Sbjct: 462 WITVLLDR----GLVRTHADLYRLRKSDLIQLDRM------GDKLADKLLHNIQESKRNS 511

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVG + A++LA+++ +           +          + VP +G  +A
Sbjct: 512 LERLLFGLGIRHVGEKAAKTLAEHFGTIDALMSASEEEL----------MAVPDIGPKVA 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQE 668
           Q+I +++  PR    ++ L            + VS   +  K +V TG LQ   R +A E
Sbjct: 562 QSIRQYFDTPRVRQLIQELKDLGVNMTYLGPQKVSDGPLAGKTVVLTGVLQAADRKQATE 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFLLQQY 721
           ++ ++G  V++ +S KTD++I GD  GSKL KAQ++        ++I +E  FL L+ + 
Sbjct: 622 WIERMGGKVASSVSAKTDVLIAGDKAGSKLAKAQEILRNHPDAKLEIWDEAAFLRLVDEA 681

Query: 722 N 722
            
Sbjct: 682 G 682


>gi|303228999|ref|ZP_07315809.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a]
 gi|302516413|gb|EFL58345.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a]
          Length = 666

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/707 (32%), Positives = 369/707 (52%), Gaps = 46/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L++E+++    YY    P + D EYD   R    +  + P+      P+ P  +
Sbjct: 4   KDRIEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETSHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G + +    KV H  P LSL  +++ +D+R F  R+ +        +  + LE KIDG 
Sbjct: 61  VGIKADGPFEKVVHGRPMLSLSNVFSADDVRAFDQRVTKELG---HQTKAYVLELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IE+RGE Y+  ++
Sbjct: 118 AVNLHYENGIFVRAVTRGDGKVGEDVTANVRTIKSIPLYL-ENAPEFIEIRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G  S      Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSESGANIHTQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L  +    F VN   R   T   ++   N     R  LPYD DG+V KV++F  Q+ LG
Sbjct: 237 LLHTLENFHFSVNPHYRVCKTVDEVIEAINYWGEKRHELPYDTDGMVIKVNDFDDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T + DI I +GRTG+LTP   LEPV + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETIVKDITINVGRTGVLTPTGELEPVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD VL+ +A E+IP+V+ ++  +R     PF+ P  CP+
Sbjct: 357 DFIT-----------EKDIRIGDHVLIHKAAEIIPEVIRVLPEKRTGSEVPFTIPDHCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVRRDGE------AAIRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I    D++ L       T  I  +   G  S  NL  +I   ++  L+R +F 
Sbjct: 459 EK----LITNVVDLYHLT------TESIMGMDRMGKKSADNLVKAIADSKSRGLDRVLFG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S   F     + +          + V  +G  +A +I+E+ 
Sbjct: 509 LGIRLIGSKAAGTIANVVKSMDRFLTITKDEL----------VAVEEIGPTMADSIIEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           ++P++I  +  L+          ++   +E+E + +V TG L+ + R +A + + + GA 
Sbjct: 559 EDPQHIEIINGLIDAGLKMDVDVQETAGNEMEGETVVLTGKLEVMGRSEAGKLLEKHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KT ++I G++ GSKL KA +LG++++NEE+F  LL+    
Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVINEEEFTELLRDLGE 665


>gi|157691416|ref|YP_001485878.1| NAD-dependent DNA ligase LigA [Bacillus pumilus SAFR-032]
 gi|190359234|sp|A8FAQ1|DNLJ_BACP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157680174|gb|ABV61318.1| DNA ligase (NAD(+)) [Bacillus pumilus SAFR-032]
          Length = 668

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/715 (33%), Positives = 393/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++ +  L + ++ ++  Y+   +P + D+EYDA  R   ++    PDL  +   
Sbjct: 1   MDKEAAKRRIEELHEILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KV H  P LSL   +N +DL  F  R+ +       + I + +E
Sbjct: 58  DSPSQRVGGAVLDAFQKVRHGTPMLSLGNAFNEQDLLDFDRRVRQAVG----DDIAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I +IP  L +  P  IEVRGE 
Sbjct: 114 LKIDGLAVSLRYENGVFVRGATRGDGTTGEDITENLKTIRSIP--LKIKRPLSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  F ALN++ +    +P+ANPRNAA+G LR+L+      R L+ FV+ + +  EI 
Sbjct: 172 FMPKPSFEALNEKRLQNEEEPFANPRNAAAGSLRQLDTKIAAKRNLDIFVYSIAELDEIG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q E L  +  LGF  N   R   T   ++     +K+ R+   Y+IDG+V KVD  +
Sbjct: 232 VESQSEGLDLLDELGFKTNKERRTCQTIEEVIELIETLKTKRADFSYEIDGIVIKVDSLA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW +++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQEELGFTAKSPRWAVAYKFPAEEVVTKLLDIELSVGRTGVITPTAILEPVKVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+V  +++++R  + +PF  
Sbjct: 352 ASLHNEDLIK-----------EKDIRLLDQVIVKKAGDIIPEVAGVLIDQRTGEEKPFHM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTECPECHSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   FK +     +   +D++ L + +     ++      G+ SV NL  SI + +  SL
Sbjct: 454 ITQLFKEQ----LVSRVSDLYRLTKEELIQLERM------GEKSVENLLRSIEQSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++       Q               L+ V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLALHFGDIDQLKQATKE----------QLLEVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-----SSEIENKKLVFTGTLQKIQRHK 665
           A+V +++    +  +  L +          K V      S    K +V TG L+++ R+ 
Sbjct: 554 AVVTYFEKEEILNLLNELKELGVNMTYTGPKPVKVEESDSYFAGKTIVLTGKLEEMARND 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+KTD++I G+  GSKL KA++L ++I +E + L  L++
Sbjct: 614 AKAAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDEVKMLEELKK 668


>gi|239631844|ref|ZP_04674875.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526309|gb|EEQ65310.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 674

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/717 (33%), Positives = 365/717 (50%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    + + 
Sbjct: 64  --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+ L    P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLK--QPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 ERFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIRD-----------KDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEVCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +            ++  AD++ L         K      F + S+ NL  +IN  R
Sbjct: 458 GPKIVAQLQAKH----LVKDVADLYHLTAADLAKLDK------FKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +        IA           VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIA----------DVPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+AIV +++       +         +  +         S +  K +V TG   +  R
Sbjct: 558 TIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               + +  LGA V+  +S+KTD++I GD  GSKL KAQ L V IMNE + L  L+ 
Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674


>gi|303231514|ref|ZP_07318244.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6]
 gi|302513857|gb|EFL55869.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6]
          Length = 666

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/708 (32%), Positives = 375/708 (52%), Gaps = 46/708 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L++E+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G + +    KV H  P LSL  +++ +++R F  R+ +        +  + +E KIDG 
Sbjct: 61  VGIKADGPFEKVVHGRPMLSLSNVFSADEVRAFDQRVTKELG---HQTKAYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IE+RGE Y+  ++
Sbjct: 118 AVNLHYENGIFVRAVTRGDGKVGEDVTANVRTIKSIPLYL-ENAPEFIEIRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G  S      Q E
Sbjct: 177 FKRINEERDEEGVPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSESGANIHTQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L  +    F VN   R  NT   ++   N     R  LPYD DG+V KV++F+ Q+ LG
Sbjct: 237 LLHTLENFHFSVNPHYRVCNTIDEVIEAINYWGEKRHELPYDTDGMVIKVNDFNDQEMLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T + DI I +GRTG+LTP   LEPV + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETVVKDITINVGRTGVLTPTGELEPVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD VL+ +A E+IP+V+ ++  +R     PF+ P+ CP+
Sbjct: 357 DFIT-----------EKDIRIGDHVLIHKAAEIIPEVIRVLPEKRTGSEVPFTIPNRCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVRREGE------AAIRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I    D++ L       T  I  +   G  S  NL  +I   ++  L+R +F 
Sbjct: 459 EK----LITNVVDLYHLT------TESIMGMDRMGKKSADNLVKAIADSKSRGLDRVLFG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S   F     + +          + V  +G  +A +I+E+ 
Sbjct: 509 LGIRLIGSKAAGTIANVVKSMDRFLTISKDEL----------VAVEEIGPTMADSIIEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           ++P++I  + +L++         ++   +E+E + +V TG L+ + R +A + + + GA 
Sbjct: 559 EDPQHIKIINSLIEAGLKMDVDVQEAAGNEMEGEIVVLTGKLEVMGRSEAGKLLEKHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           V+  +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL+     
Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVINEEEFIELLKDLGEN 666


>gi|158521726|ref|YP_001529596.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3]
 gi|254781314|sp|A9A0L9|DNLJ_DESOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158510552|gb|ABW67519.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3]
          Length = 682

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/717 (37%), Positives = 399/717 (55%), Gaps = 50/717 (6%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            L   +A++ ++ L  E+  H+  YY    P I D+EYD L R    +    PDLA   D
Sbjct: 4   TLDKSEAKERVTFLRNELHRHNHLYYIKDAPEISDAEYDRLFRELAELEALHPDLA---D 60

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P  P  ++G      L  VT +IP LS+   +  E+L KF  R+ R  Q  D   + +  
Sbjct: 61  PASPTARVGAPPTGDLATVTRTIPMLSISNAFADEELFKFDERVRRSLQTGD--PVTYLA 118

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEV 187
           EPK+DGT + + YEKG+ V AA RGDG +GE ++   R I ++P  L+ +    P ++EV
Sbjct: 119 EPKLDGTAVELVYEKGRLVMAATRGDGVTGEVITPNARTIGSVPLHLTGDAVPMPNLLEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEV ++K  F  LN   +      +AN RNAA+G LR+L+     +R L    +G+G+ 
Sbjct: 179 RGEVVMTKEGFEKLNALRLERDEPLFANARNAAAGSLRQLDSRVTASRPLTLIAYGIGRF 238

Query: 247 SEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           SEI A   Q+E++ ++   GF  N+ VR      G++ +Y  ++ IR +LPYDIDG+V K
Sbjct: 239 SEIDAISTQHEIVTRLADFGFKTNSHVRWDLDIKGVIDFYRFLEGIRPSLPYDIDGMVVK 298

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    Q+ LG  +RSPRW+I++KFA  Q +TRL+ ID+Q+GRTG LTPVA LEPV IGG
Sbjct: 299 VDRLDFQRTLGATSRSPRWVIAYKFAASQETTRLVAIDVQVGRTGALTPVALLEPVTIGG 358

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ ATLHNED I             +DIRVGD VLV+RAG+VIP+VV +I   R  + 
Sbjct: 359 VTVSRATLHNEDEIAR-----------KDIRVGDAVLVQRAGDVIPEVVQVITGRRTGNE 407

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF  P+ CP+C + VVR+ +       A  RC    AC AQ  ER+KHF ++ AF+I+G
Sbjct: 408 TPFQMPATCPVCGTPVVREPSE------AVTRCVNA-ACPAQVKERIKHFAAKGAFDIDG 460

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + +D           I   AD+FTL+     S  ++    GF   S  NL  +I K 
Sbjct: 461 LGDKLVDQLVDRGM----IASYADLFTLRVEDLESLDRM----GF--KSAQNLVAAIEKS 510

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R+I+ + F++ LG+RHVGA +A  LA+ +      A+               L  +  +G
Sbjct: 511 RHITFDAFLYGLGMRHVGAHVATLLARAFPGIDQLAEAALA---------GQLNSIDGIG 561

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQ 662
            +IA+++  F+ NP N   V++L+   V+      E        +  K  V TGTL+K+ 
Sbjct: 562 GVIAESVKNFFSNPENRQTVDSLINHGVALQFPEKEAATGHEMPLAGKTFVLTGTLEKMT 621

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A++ +   G  V+  +S +TD ++ G+ PGSK +KA+ LGV I++E   L LL+
Sbjct: 622 RDQARQRIEAAGGKVTGSVSSRTDYVVAGEAPGSKRDKAEALGVAILDEAGLLSLLE 678


>gi|227498670|ref|ZP_03928814.1| DNA ligase [Acidaminococcus sp. D21]
 gi|226904126|gb|EEH90044.1| DNA ligase [Acidaminococcus sp. D21]
          Length = 674

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/715 (35%), Positives = 385/715 (53%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++A  +  +L +E+  +   YY    P I D+EYD+L R+  AI   +P+L     P
Sbjct: 1   MTKQEALLKAQALRKELERNSYLYYVEDMPTITDAEYDSLMRQLRAIEAEYPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG       +V H  P LSL   ++ E++++F  R++    K  D  + + +E
Sbjct: 58  DSPTQHVGGYAKPGFTEVHHITPLLSLANAFSPEEMKEFDRRVHEGLPK--DAKVEYVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEV 187
           PKIDG   +I YE G+FV AA RGDG  GE+V+  +R I  IP+VL     + IPE+++V
Sbjct: 116 PKIDGLACSIIYENGRFVRAATRGDGMVGENVTENVRTIKNIPKVLSSLPGVPIPELLDV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKT 246
           RGEVY+ ++ FL LN+E +  G   +ANPRNAA+G LR+L+P    R  L FF +G+G  
Sbjct: 176 RGEVYMPRHAFLKLNEERVERGETEFANPRNAAAGSLRQLDPRVTARRSLAFFAYGIGTG 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           +        + + ++   GF    G  +  T     +        R +L YD DG+V KV
Sbjct: 236 A---LDTHNDSMDRLEAYGFTTTEGRTKVATIEEANALIARHGERRKSLGYDTDGVVVKV 292

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +    Q  LG   + PRW +++KF  +QA T L DI IQ+GRTG+LTP A L+PV + G+
Sbjct: 293 NAVWQQNILGATGKDPRWAMAYKFPPEQAETTLRDIVIQVGRTGVLTPTAVLDPVKLSGS 352

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+ ATLHNED+I             +DIR+GDRV++ +A E+IP+V+ + V +R  + +
Sbjct: 353 TISRATLHNEDFI-----------AEKDIRIGDRVIINKAAEIIPEVLRVAVEKRTGEEK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P+ CP C   VVR          AA RCT    C A   E L HF SRDA NI+G 
Sbjct: 402 VFHMPAECPECGWPVVRKNGE------AAVRCTNP-HCPALGREGLIHFTSRDAMNIDGC 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G   L    +       ++ P+D++ +         ++         S  NL  +I   +
Sbjct: 455 GPAVLLQLQERN----LVKDPSDLYLVTADDLMELDRMGA------KSANNLVRAIAASK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SL++ +F+LGIRHVGA++AR+LA  Y +     +     +A          ++P +G 
Sbjct: 505 ENSLDKLLFALGIRHVGAKVARTLAMKYQTMDALMEATQEELA----------QIPDIGP 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +IA+++V ++ +P N   +E L +       +G    N +     K +VFTGTL  + R 
Sbjct: 555 VIAESVVTYFGDPGNQDYIERLKELGLNMKMLGTAASNENHPFYGKTMVFTGTLPTLDRA 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            AQ    ++GA V++ +S+KTD ++ G +PGSK  KAQ LGV I++E  F  LL+
Sbjct: 615 TAQTMAQEVGAKVTSSVSKKTDYVVAGADPGSKYTKAQSLGVTILDEAAFRRLLE 669


>gi|152965283|ref|YP_001361067.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
 gi|190359261|sp|A6W7L4|DNLJ_KINRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151359800|gb|ABS02803.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
          Length = 696

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/720 (30%), Positives = 349/720 (48%), Gaps = 39/720 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR     L  +I      YY  +   + D +YDAL+R   A+    P L     P+ 
Sbjct: 10  PSEARHRWEDLVAQIEAARFAYYVRNSSPLSDGQYDALERELRALEEQHPQL---RTPDS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +GG  +     V H    LSL+  ++ ++L  +  R+ R           +  EPK
Sbjct: 67  PTQTVGGTFSTEFTTVDHPERMLSLDNAFSTDELSAWAARVEREVGA----GARYLCEPK 122

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           IDG  I + YE G+ V    RGDG +GEDV+  +R +  +P  L+  ++PE +EVRGEV+
Sbjct: 123 IDGLAIDLVYEDGRLVRGVTRGDGRTGEDVTFNVRTVEDVPHRLTGADVPEFLEVRGEVF 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
              + F A+N  ++  G+ P+ANPRNAA+G LR+ +P    TR L   VHG+G    +  
Sbjct: 183 FHLDGFAAINAGLVEAGKPPFANPRNAAAGSLRQKDPRVTATRPLRMLVHGVGARRGMEN 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q    +K+   G P +  V+  +T   +  Y       R  + ++IDG+V KVD+  L
Sbjct: 243 DTQSGAYEKLAAWGLPTSPRVKVVDTLDEVAEYVRFYGEHRHDVEHEIDGVVVKVDQVPL 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP A LEPV + G+ +  A
Sbjct: 303 QRRLGSTSRAPRWAIAYKYPPEEVTTSLLDIQVNVGRTGRVTPFAVLEPVKVAGSTVAMA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +             + + +GD V+V++AG+VIP+V+  +V  R    + F  P
Sbjct: 363 TLHNASEVVR-----------KGVLIGDTVVVRKAGDVIPEVLGPVVESRTGAEREFVMP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +               RC    +C AQ  ER+ H   R +F++E LG +  
Sbjct: 412 TVCPECGTPLAHQRAD-----DVDIRCPNSRSCPAQLRERVFHLAGRGSFDVEALGDKAA 466

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               +    A  I    D+FTL               G    +   L  +++ R++  L 
Sbjct: 467 AALLQ----AGVIADEGDLFTLTEDDLVGVPLFTTKAGTVSANGRRLLANLHDRKDQPLW 522

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  L IRHVG   AR+LA  + S +         IA              VG  IA+A
Sbjct: 523 RVLVGLSIRHVGPTAARALADRFGSMEAIEAATAEDIA----------SAEGVGPTIAEA 572

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +VE+     +   V    +         +++    +E   +V TG+L    R +A+E V 
Sbjct: 573 VVEWLAVDWHRDVVRKWREAGVRMADERDESTPRTLEGLTIVVTGSLSGFSRDEAKEAVL 632

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
             G   S+ +S+KT  ++VG+  GSK +KA+QLGV +++EE F+ LL+     +    ++
Sbjct: 633 SRGGKASSAVSKKTSFVVVGEAAGSKADKAEQLGVPVLDEEGFVALLEGGPDAVARPAEE 692


>gi|239618216|ref|YP_002941538.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
 gi|239507047|gb|ACR80534.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
          Length = 672

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/713 (34%), Positives = 379/713 (53%), Gaps = 47/713 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +     +    L +E++YH   YY  + PII D EYD + +    +   +P+L     P+
Sbjct: 3   APHDVIERAKKLREELNYHAYRYYVLNDPIITDEEYDRMLKELQELEKKYPELI---TPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  +IG +      +V HS    SL+  ++ E+L+ F  RI +         + +  E 
Sbjct: 60  SPTQRIGAKPLNGFEQVIHSSRLYSLDNTYSEEELKGFDRRIKKLLN---VEQLDYVCEL 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +T+RYE+G  V  A RGDG  GE+V+  IR I +IP  L    P  IE+RGEVY
Sbjct: 117 KIDGLSVTLRYEEGILVLGATRGDGTVGENVTKNIRTIKSIPLRLRK--PLTIEIRGEVY 174

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K++F  +NDE        +ANPRNAA+G LR+L+P ++  R L+ F + +        
Sbjct: 175 LPKSEFKKINDERAEQELPLFANPRNAAAGTLRQLDPKEVAKRNLDAFFYQIVSPENYEL 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q+E+LQ ++ +G       R  +    ++ ++ E    R+ L Y IDGLV KV+    
Sbjct: 235 ETQWEVLQFLKEIGMKTEPHARLVSDISEVIEFWKEWSESRNNLDYAIDGLVVKVNRIEF 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  A+SPRW I+ KF  +QA T+LLD+  Q+GRTG++TPVA LEPV + G ++  A
Sbjct: 295 QNKLGYTAKSPRWAIAFKFPAEQARTKLLDVTFQVGRTGVITPVAELEPVKLAGTIVKRA 354

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN DYI+            RDIR+GD V+V++AGE+IP++V  I   R    +    P
Sbjct: 355 TLHNFDYIRD-----------RDIRIGDTVIVEKAGEIIPQIVKPIAETRSGKEKVIEPP 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP+C  +V      K  +   A RC    AC A+   R+  FVSR+A +I GLG++ +
Sbjct: 404 SSCPVCGGKV-----GKAKEDEVALRCLNP-ACPAKTERRILLFVSRNAMDINGLGEKMI 457

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                    +  ++ PAD++ L               G G+ ++ N Y  + K R   L 
Sbjct: 458 KRLV----HSGLVKSPADLYKLTPFDLAQLG-----NGIGEKTIRNFYKELEKSRKRPLH 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +  LGI  VG ++AR LA+++ +            A  N     L+ VP +G  +A+ 
Sbjct: 509 KLLAGLGIPGVGVKLARDLAEHFKTLD----------ALQNATIDQLLEVPGIGLELAKN 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IVEF+  P     +E L KEV  +           ++ KK V TGTL+   R +A+E + 
Sbjct: 559 IVEFFNLPEIKEEIEHLKKEV--NTSERSSKKEELLKGKKFVLTGTLKNFTRKEAEELIV 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            LG  VS+ +S+ TD ++VG+NPGSK +KA+ L VK +NEE+F+ L+++    
Sbjct: 617 SLGGKVSSSVSKNTDFVVVGENPGSKFQKAKALNVKTINEEEFIKLIREGEKN 669


>gi|262375659|ref|ZP_06068891.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
 gi|262309262|gb|EEY90393.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
          Length = 679

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/709 (35%), Positives = 373/709 (52%), Gaps = 47/709 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            ++  L Q ++ H+  YY   +P I DSEYD L  +  A+   +PDL +S   + P +K+
Sbjct: 9   AQMRQLIQLLAKHNHAYYVMDQPSIEDSEYDQLFHQLKALEQQYPDLIQS---DSPTDKV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG+       VTH++P LSL  ++N EDL  F  RI        +  I + +E K DG  
Sbjct: 66  GGQALSKFVTVTHAVPMLSLGNVFNQEDLLAFARRIEERLP---NQKIEYDVELKFDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISK 195
           I++ YE G       RGDG +GED++  +R I  +P++LS     IP+++EVRGEV + K
Sbjct: 123 ISLWYEHGVLTRGVTRGDGETGEDITQNVRTIRNLPKLLSPVNGIIPDLLEVRGEVLMPK 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK-TSEIFAKG 253
           + F  LN    A G K +ANPRNAA+G LR+L+P     R L F+ +G+ +         
Sbjct: 183 SGFEKLNAANAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCVPHHGQTT 242

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
               L+ +   GF V       ++   +   Y ++   R++L  +IDG+V KV++   Q+
Sbjct: 243 MSASLEWLHQFGFAVGERHFICDSIQDVQKVYEQIIDERASLSVEIDGMVIKVNDLKQQQ 302

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +R PRW  ++KF    A T + +I+ Q+GRTG LTPVARL PV +GG  ++N TL
Sbjct: 303 QLGFLSREPRWATAYKFPAVAALTTVENINWQVGRTGTLTPVARLNPVAVGGVTVSNVTL 362

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   I  L           D+R+GD V V R+G+VIPKV  +    R  DA     P  
Sbjct: 363 HNIGEIHRL-----------DVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDAVEVHLPEQ 411

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGLG +  + 
Sbjct: 412 CPVCDSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWAES 465

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     +   +DI+ L   ++T       I   G  SV NL D+I   +  +L  F
Sbjct: 466 LL----HLNLLNDVSDIYHLHEHRETLL----GIEKMGAKSVQNLLDAIENSKKTTLAAF 517

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGIR VG   AR LA  + +     Q           D  +L + P VGDI A+ I+
Sbjct: 518 IYALGIRGVGETTARMLANTFQTLDALRQA----------DLEALKKTPDVGDITAEWIL 567

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +F+Q P N+  ++ L                  +  +  V TGTL  + R  A + +  L
Sbjct: 568 DFFQAPHNLEVLDRL-LAAGIHWDAPIAPTRQPLNGESWVVTGTLSSMGRDDATQLLQAL 626

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           GA VS  +S KT  ++ G+  GSKL+KA++LG+ ++NE+QF+ L+Q Y 
Sbjct: 627 GARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIPVINEQQFIGLMQDYG 675


>gi|209545276|ref|YP_002277505.1| NAD-dependent DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532953|gb|ACI52890.1| DNA ligase, NAD-dependent [Gluconacetobacter diazotrophicus PAl 5]
          Length = 708

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/716 (39%), Positives = 414/716 (57%), Gaps = 34/716 (4%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +    L+  QA  EL  L Q+I   D  YY+   P + D+EYDAL++R  AI   FPDL 
Sbjct: 14  LDPSELTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPDLR 73

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125
           R+   + P   + G  + +  +  H +P LSL+ ++  ED   F+TR  RF    DD + 
Sbjct: 74  RA---DSPSLHVSGAPSAAFGRHRHLVPMLSLDNVFGREDFESFVTRAARFLGLNDDQAR 130

Query: 126 -IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + F  EPKIDG  I++ YE G+FV    RGDG  GEDV+A +R +  +P  L    P +
Sbjct: 131 ALRFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDVPLRLKGPAPAL 190

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGL 243
           IE+RGEV++SK  FL++N      G+KP+ANPRNAA+G LR+L+P    R  L+ F +  
Sbjct: 191 IEIRGEVFLSKPAFLSINAAQAEAGQKPFANPRNAAAGSLRQLDPNITARRPLSLFAYAQ 250

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G +S+  A   ++ L+++R  GF VN       +     ++ + +   RS L YDIDG+V
Sbjct: 251 GFSSDRVADTHWDYLERLRQWGFTVNPLSCVVESAEAAEAFMDRIARERSGLEYDIDGVV 310

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+ +LQ +LG   R+PRW I+ KF  +QA TRL  I+IQ+GRTG LTPVA LEPVN+
Sbjct: 311 YKVDDLALQDRLGFVGRAPRWAIAWKFPAEQAITRLTRINIQVGRTGALTPVAILEPVNV 370

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV--NER 421
           GG ++T ATLHNED I             +D+RVGD V ++RAG+VIP+++ ++    + 
Sbjct: 371 GGVIVTRATLHNEDEIAR-----------KDVRVGDLVQIQRAGDVIPQILGVVPPGADA 419

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P  + F FP  CPIC +R  R             RCTGGL C AQ +ERL HFVSRDAF
Sbjct: 420 PPRGEAFIFPHTCPICGARAERPPGE------VVWRCTGGLTCPAQVVERLIHFVSRDAF 473

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+GLG++ +  F         ++ PADIF L   +    T+     G+G VS  NL  S
Sbjct: 474 DIDGLGERTITEFHAD----GLLKTPADIFRLPDHEADIATR----EGWGTVSARNLTAS 525

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +  R+ I L RFI++LGIR +G   AR LA++Y SY ++ +++       +D+ L+L  +
Sbjct: 526 VRARQTIPLARFIYALGIRRIGTSNARLLARHYGSYTHWREQMLRATTIGSDERLALGSI 585

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  IA  +  F+    N+  ++ L   ++ +I   +      +  K +VFTGTL  +
Sbjct: 586 TGIGGAIADELAAFFMEAHNLETLDDLTAMLT-AIEDEDLPAQGHLSGKTVVFTGTLTTM 644

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            R +A+    +LGA V+  +S+KTD++++G + GSK  KA +LG+  ++EE +  L
Sbjct: 645 TRPEAKAIAERLGARVTDSVSKKTDLVVLGADAGSKARKAAELGIDTLDEEGWREL 700


>gi|258510685|ref|YP_003184119.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477411|gb|ACV57730.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 684

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/721 (33%), Positives = 377/721 (52%), Gaps = 56/721 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ALS+E+AR     L ++I YH+  YY    P I D+E+DAL R    +   +P+L    D
Sbjct: 9   ALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELV---D 65

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P  P  ++G        KV H +P LSL   ++ EDL  +  R+ +       + + +  
Sbjct: 66  PASPTQRVGAPALEGFAKVVHEVPMLSLANAYSTEDLLDWDRRVRQAVG----DDVRYVC 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + +RY+ G+ V  A RGDG  GED++A IR I  +P  LS   P  +EVRGE
Sbjct: 122 ELKVDGLAVALRYQDGRLVLGATRGDGSVGEDITANIRTIRNVPLELSE--PVSLEVRGE 179

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
            Y+ K +F+ LN+     G   +ANPRNAA+G LR+L+P     R L   V+ L +    
Sbjct: 180 AYMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEAH 239

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +   + L  +  LG P +           +++Y       R  LPY  DG+V KVD  
Sbjct: 240 GCETHSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVDSL 299

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ +LG  A+SPRW I++K+A +QA T L  I++ +GRTG++TP A  +PV + G  ++
Sbjct: 300 ALQARLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTTVS 359

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED ++            +DIRVGD ++V++AG++IP+V+  +   R      F 
Sbjct: 360 RASLHNEDLVR-----------EKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEFR 408

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C SR+VR           A RC     C A   E L HF SRDA NIEGLG+Q
Sbjct: 409 MPETCPQCGSRLVRLDGE------VAWRCINP-DCPALLREGLIHFCSRDAMNIEGLGEQ 461

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +            +R  AD++ L++       ++      GD     L  +I + +  S
Sbjct: 462 WITVLLDR----GLVRTHADLYRLRKADLVQLDRM------GDKLADKLLHNIQESKRNS 511

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER +F LGIRHVG + A++LA+++++       I+ +++ + +D    + VP +G  +A
Sbjct: 512 LERLLFGLGIRHVGEKAAKTLAEHFVT-------IDALMSASEEDL---MAVPDIGPKVA 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQE 668
           Q+I +++  PR    ++ L            + VS   +  K +V TG LQ   R +A  
Sbjct: 562 QSIRQYFDTPRVRQLIQELKDLGVNMTYLGPQKVSDGPLAGKTVVLTGVLQAADRKQATA 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFLLQQY 721
           ++ Q+G  V++ +S KTD++I GD  GSKL KAQ++        ++I +E  FL L+ + 
Sbjct: 622 WIEQMGGKVASSVSAKTDVLIAGDKAGSKLAKAQEILRNHPDAKLEIWDEAAFLRLVDEA 681

Query: 722 N 722
            
Sbjct: 682 G 682


>gi|148269959|ref|YP_001244419.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1]
 gi|170288644|ref|YP_001738882.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2]
 gi|190359298|sp|A5IKX0|DNLJ_THEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781442|sp|B1LA51|DNLJ_THESQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147735503|gb|ABQ46843.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1]
 gi|170176147|gb|ACB09199.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2]
          Length = 688

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/721 (35%), Positives = 388/721 (53%), Gaps = 54/721 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +R++        ++  +E+  L +EI YH+  YY  + P+I D EYD L RR   +  
Sbjct: 1   MSERKI-------PKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELER 53

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +P+L     P+ P  ++GG++      V HS+P LSL+  +N E++ +F  R+ +  Q+
Sbjct: 54  MYPELV---TPDSPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKTLQE 110

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                + +  E KIDG  I +RYE GKFV  A RGDG  GEDVS  ++ + +IP  L   
Sbjct: 111 ---AEVEYVAELKIDGVSIALRYENGKFVLGATRGDGIEGEDVSENVKTVRSIPLRLRK- 166

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  +EVRGE+Y+  ++F  LNDE    G  P+ANPRNAA+G LR+LN      R L+ F
Sbjct: 167 -PVTVEVRGEIYMPVDEFKRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSF 225

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +        K Q+E LQ ++ LGF VN   +       ++ Y+ E +  +  L Y +
Sbjct: 226 IYYVVHPENYGLKTQWEALQFLKELGFKVNPHSKLCKNIQEVIDYWREWEERKKELDYWV 285

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+ F  Q+ LGE +++PRW I+ KF  +QA TR+LD+ IQ+GRTG+LTPVA LE
Sbjct: 286 DGVVVKVNRFDFQRILGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELE 345

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G ++  A+LHN +YI+            +DIR+GD V V++AG +IP++V  I  
Sbjct: 346 PVQLAGTIVKRASLHNFEYIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPE 394

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    +    P  CP+C  +V +    +      A RC     C A+    L+  VSR+
Sbjct: 395 LRTGSEKEIKPPDKCPVCGGKVGKLDPEE-----VALRCLNP-HCPAKLKRALRTLVSRE 448

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG++ +D        A  ++  ADIF L               G G  ++  + 
Sbjct: 449 ALDIEGLGEKLIDRLVD----AGLVKDIADIFYLTPFDLAQLG-----PGIGQRTIAKIL 499

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
             I + +   L + I  LGI  VG + A+ LA+++ S +  A             + +L 
Sbjct: 500 QEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAIADA----------SYETLK 549

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +P +G  IA++IVE+++NP+    +E L K       R  K     ++      TGTL+
Sbjct: 550 DIPGIGPEIAKSIVEYFRNPKTREIIEKLKKAGVKLEERVMKL--DILKGLTFAVTGTLK 607

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +  E+  +LGA V   +SR TD +IVG+NPGSK EKA+ L VK M+EE+FL  ++
Sbjct: 608 NFTREEIVEFFEKLGAKVVNSVSRNTDYLIVGENPGSKYEKAKMLKVKTMSEEEFLEFVR 667

Query: 720 Q 720
           +
Sbjct: 668 K 668


>gi|116494557|ref|YP_806291.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334]
 gi|122264017|sp|Q03AC3|DNLJ_LACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116104707|gb|ABJ69849.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334]
          Length = 674

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/717 (33%), Positives = 365/717 (50%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    + + 
Sbjct: 64  --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+ L    P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLK--QPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +     Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIRD-----------KDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEVCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +            ++  AD++ L         K      F + S+ NL  +IN  R
Sbjct: 458 GPKIVAQLQAKH----LVKDVADLYHLTAADLAKLDK------FKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +        IA           VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIA----------DVPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            I +AIV +++       +         +  +         S +  K +V TG   +  R
Sbjct: 558 TIGEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               + +  LGA V+  +S+KTDI+I GD  GSKL KAQ L V IMNE + L  L+ 
Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDILIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674


>gi|81429164|ref|YP_396165.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K]
 gi|123755813|sp|Q38VC5|DNLJ_LACSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78610807|emb|CAI55858.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K]
          Length = 677

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/718 (32%), Positives = 381/718 (53%), Gaps = 53/718 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E  +  +A      L  +++ +   YY    P++ D  YD L R  + +  AFP +  +
Sbjct: 7   VEDYTQSEAASLAQQLRDQLADYSQAYYTQDAPLVEDHVYDELYRDLEQLEAAFPVIVTN 66

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  K+GG++     KVTH IP LS+  +++  +L  F  R+ +         I +
Sbjct: 67  ---DSPTQKVGGQVLPGFTKVTHEIPMLSMGDVFSEAELAAFDQRLRK----NTATEIEY 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  I + YEKG+FV  A RG+G  GED++  ++ I  IP+ L+   P  IEVR
Sbjct: 120 NVELKIDGLAIDLIYEKGRFVRGATRGNGTIGEDITQNLKTIKAIPQKLT--RPVSIEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE Y+ K  F  LN +  A G+ P+ANPRNAA+G LR+L+      R L+ F++ +    
Sbjct: 178 GECYMPKAAFADLNQKREAEGQAPFANPRNAAAGSLRQLDAKVAAARQLSAFIYTIVTFD 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           ++ A  Q E L  +  LGF VN           + ++  + +  R+ L Y IDG+V KV+
Sbjct: 238 DVQATTQSEALHVLAELGFNVNPTSVVCQNMAEVQAFIEQYQGTRNDLAYGIDGVVLKVN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ+QLG   + PRW I++KF  ++A T + +I+  +GRTG++TP A ++PV + G  
Sbjct: 298 DLALQRQLGNTVKVPRWEIAYKFPPEEAETVIREIEWTVGRTGVVTPTAVMDPVQLAGTT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN D ++            +D+R+ D VL+ +AG++IP++  +++ +R  D+Q 
Sbjct: 358 VARASLHNADMLRD-----------KDVRLLDTVLLHKAGDIIPEISQVVLAKRPSDSQA 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C   +V            A RC   + C AQ  E+L HF SR+A NI+GLG
Sbjct: 407 YGIPTTCPSCGHDLVHLDEE------VALRCINPM-CPAQMKEQLTHFASRNAMNIDGLG 459

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +    + E     I   AD++ L         K      F + S+ NL ++I+  R 
Sbjct: 460 PRIITQLLEKE----LIHDVADLYRLTADDLAQLDK------FKEKSINNLLNAIDASRQ 509

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLER +F LGIRHVGA+ AR LA+++           N+ A    D  ++I V  +G I
Sbjct: 510 NSLERLLFGLGIRHVGAKAARLLAEHF----------QNLAALMASDQETIITVDTIGTI 559

Query: 608 IAQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQ 662
           IA ++V ++ + +       +EA+   ++ +     +  +S+     K +V TG L++  
Sbjct: 560 IADSLVTYFADSQVQTLMAELEAVGVNLTYTGVTKAQAATSDSYFNGKTVVLTGKLEQYT 619

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R + ++ +   GA V+  +S+KTD +I G + GSKLEKAQ L + I+NE      L Q
Sbjct: 620 RGELKQLLEDNGAKVTGSVSKKTDALIAGQDAGSKLEKAQSLAIPIINEADLDNYLAQ 677


>gi|77919807|ref|YP_357622.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380]
 gi|123756590|sp|Q3A2F5|DNLJ_PELCD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77545890|gb|ABA89452.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380]
          Length = 671

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/715 (33%), Positives = 371/715 (51%), Gaps = 46/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   Q  +    L  E+  H   YY Y +P I D+EYD L R    +  A+P+L  +   
Sbjct: 1   MDKAQRIRRYQQLCDELHRHSRLYYTYDRPEITDAEYDRLFRELLELEKAYPELVTAA-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G         V HS P LSLE     ++L  F  RI +      D  + +  E
Sbjct: 59  -SPSLRVGASPLSQFTPVPHSRPMLSLENALTEDELYDFDARIRKLLAS--DAPVRYVCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y  G     + RGDG +GE ++  +R IP+IP VLS   P ++EVRGEV
Sbjct: 116 LKMDGVAVELVYRDGILSVGSTRGDGTTGEGITENLRTIPSIPLVLSGEAPALLEVRGEV 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           YI  +DF  LN E    G + +ANPRNAA+G LR+L+      R L  F +G+G+ S   
Sbjct: 176 YIDLDDFQKLNHEREEEGLQVFANPRNAAAGSLRQLDSAVTAKRPLKIFCYGIGQLSGEH 235

Query: 251 AKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               + +L+ M   G  VN    R       +  Y+ +++  R  LPY+IDG+V KVD+ 
Sbjct: 236 PASHHSLLKCMHRWGLRVNLEHSRTLEGIEQVTDYFRQLQQRRDELPYEIDGMVVKVDDL 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LGE+ R+PRW I+ KF  +QA T + DI +Q+GRTG +TPVA+L+PV + G  ++
Sbjct: 296 ALQRELGEKTRTPRWAIACKFPPRQAVTVVEDIVLQVGRTGAITPVAQLKPVEVSGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D I  L           D+ +GD V+V+RAG+VIP VV ++   R+   +   
Sbjct: 356 RASLHNWDEIARL-----------DVLIGDTVVVERAGDVIPDVVKVLTEHRNGQERSVP 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   VV+             RC   ++C A+  E +KHFV+R A +I+GLG++
Sbjct: 405 LPQSCPACGGPVVKLEGE------VVPRCQ-EMSCPARLRESIKHFVARRAMDIDGLGER 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   K E     I+  AD++ L +       ++       D S   L  +I   +   
Sbjct: 458 TIEQLLKRE----LIKSVADLYHLTKEDLLLCERLA------DKSAEKLLTAIAASKTRP 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+F+LGIRHVG  +A  LA+ + S    +      +          + +  +G  +A
Sbjct: 508 LGRFLFALGIRHVGEHLASLLARQFGSLDALSHATREEL----------LAIHEIGPQVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++ +F+   RN   + AL +    +    EK     +  K  VFTG+L +  R +AQE 
Sbjct: 558 DSVTDFFAKSRNREILAAL-QRAGVAPQAEEKRSGGPLTGKSFVFTGSLTRFSRKQAQEM 616

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           V +LG   S  +S+KTD ++ G+  GSKLEKA+QL ++I++EE+FL ++      
Sbjct: 617 VERLGGRASGSVSKKTDCVVAGEAAGSKLEKARQLNIQILSEEEFLQMIDTLEEA 671


>gi|332525978|ref|ZP_08402119.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
 gi|332109529|gb|EGJ10452.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
          Length = 686

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/717 (34%), Positives = 379/717 (52%), Gaps = 49/717 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S   A +  + L + +S+H   YY    P I D+EYD L +   AI    PDL     P
Sbjct: 1   MSPTSAAERAAELRRILSHHAHRYYVLDAPEIPDAEYDRLFQELQAIESEHPDLL---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKKDD-NSIFF 128
           + P  +I G++   L  V H++  LS+    +        F  R+ R  +  DD   + +
Sbjct: 58  DSPTQRIIGQVLPGLVPVRHAVAMLSIRTETDTTAAGAEAFDARVRRELELGDDAPPVEY 117

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E K DG  I +RY  G  V AA RGDG +GEDV+  IR I  IP  L    P ++EVR
Sbjct: 118 AAELKFDGLAINLRYVAGLLVQAATRGDGETGEDVTHNIRTIGQIPLRLFGTAPPVLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEVY+ ++DF  LN+     G K + NPRN A+G +R+L+   +  + L+F+ +GLG+  
Sbjct: 178 GEVYMRRDDFERLNERQREKGAKTFINPRNTAAGAVRQLDSRSLADKRLSFYAYGLGEVQ 237

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                      L  +   G PVN          G+V+++  + + R  LP+DIDG+VYKV
Sbjct: 238 GWEQPPTHSGTLDALAAFGLPVNGERAVVQGADGLVAFHRRIAAARDALPFDIDGVVYKV 297

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQK+LG   R PRW ++HK+  ++  TRL  I+IQ+GRTG LTPVA+LEPV +GG 
Sbjct: 298 NDIALQKRLGFVTREPRWAVAHKYPAQEQMTRLNAIEIQVGRTGKLTPVAKLEPVFVGGT 357

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN   ++            + +RVGD V+V+RAG+VIP+VV  +  ER     
Sbjct: 358 TVSNATLHNLFELRR-----------KGVRVGDDVIVRRAGDVIPEVVGRVPGERAGYVP 406

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P  CP+C S V R+      +    HRC+GGL C+AQ+ + L HF  R A +IEGL
Sbjct: 407 NFRMPRQCPVCGSAVARE------RGGIDHRCSGGLFCAAQRKQALLHFAGRRAMDIEGL 460

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D           IR   +++TL   + ++  ++       + S  NL  ++++ +
Sbjct: 461 GDKLVDQLVD----GGLIRTLPELYTLGVAKLSALERMA------EKSAANLVAALDRSK 510

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF+++LGIR VG   A+ LA+++                       L+ V  VG 
Sbjct: 511 QTTLARFLYALGIRQVGEATAKDLARHFGGLDRVMDA----------SVEQLLEVRDVGP 560

Query: 607 IIAQAIVEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           I+AQ+I  F++ P N   VE    A ++             +  +  K LV TGTL  + 
Sbjct: 561 IVAQSIRTFFEQPHNREVVEQLRAAGIRWDEHEGAAVANAAALPLAGKTLVLTGTLPTLS 620

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+E +   G  V+  +S+KT  ++ G+  GSKL+KA++LG+++++E+    LLQ
Sbjct: 621 REQAKEMIEAAGGKVAGSVSKKTHYVVAGEEAGSKLDKARELGIEVLDEDGLRRLLQ 677


>gi|22298400|ref|NP_681647.1| NAD-dependent DNA ligase LigA [Thermosynechococcus elongatus BP-1]
 gi|81743454|sp|Q8DKK2|DNLJ_THEEB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|22294579|dbj|BAC08409.1| DNA ligase [Thermosynechococcus elongatus BP-1]
          Length = 689

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/721 (32%), Positives = 362/721 (50%), Gaps = 62/721 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L + +      YY   +PI+ D  YD L R    +  A+P+      P+ P  +
Sbjct: 8   AERIQQLRRLLQRASYAYYALDQPIMEDEVYDQLYRELQELEAAYPEYI---TPDSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW----QKKDDNSIFFTLEPK 133
           IG         V+H IP  SLE  +   D+  +  R  R+W    Q++      +  E K
Sbjct: 65  IGEAPVSQFESVSHRIPLYSLENAFTFADMVAWQERWQRYWRTLRQEEPLPPAEYVCELK 124

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  + + YE G  V  A RGDG  GEDV++ +R I  IP  L+L N P ++EVRGE +
Sbjct: 125 MDGVALALTYENGLLVRGATRGDGQRGEDVTSNVRTIRPIPLRLALDNPPPVVEVRGEAF 184

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-------- 243
           +    F  LN E  A G  P+ANPRNAA+G LR+L+P  +  R L+FF + L        
Sbjct: 185 LPLERFHQLNQERQAQGEPPFANPRNAAAGTLRQLDPRIVAQRQLDFFAYALHLPEGGSV 244

Query: 244 --GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+      + Q ++L  ++ LGF VN           + +YY+  ++ R  LPY  DG
Sbjct: 245 PLGENQAGEPQSQRQVLYALQHLGFRVNPHHADCPDLEAVKAYYDRWQTARHQLPYLTDG 304

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K+++  LQ+ LG   + PR  I+ K+  +QA T +L I +Q+GRTG LTPVA L PV
Sbjct: 305 IVVKLNDLKLQQTLGFTQKFPRGSIAWKYEPEQAITDVLAITVQVGRTGALTPVAELAPV 364

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  ++ ATLHN DYI  L           D+ +GD+V++ +AGE+IP++V +    R
Sbjct: 365 QLAGTTVSRATLHNADYIAEL-----------DLHIGDKVVIHKAGEIIPEIVRVFPELR 413

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P A+PF+ P+ CP C   VVR  N       A  RC     C A    +++H+ SRDA 
Sbjct: 414 PPTARPFTMPTACPECHQPVVRPANE------AVSRCGNPR-CPAIVRGQIRHWASRDAL 466

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+GLG++ +      E     +R PAD++ L   Q  S  ++         S   L  +
Sbjct: 467 DIQGLGEKLVQQLVTKE----LVRTPADLYRLTAAQLLSLERMGQ------KSADKLLVA 516

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   +     R ++ LGIRHVG+  A+ LA  + S +  A                L  V
Sbjct: 517 IANSKQQPWPRVLYGLGIRHVGSVNAQLLADRFKSVEELATAT----------VADLCGV 566

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEA-----LLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
             +G+ IAQA+ E++Q+P +   +       L    +    +        +  K+ V TG
Sbjct: 567 DGIGEEIAQAVQEWFQDPDHQSLIADLQALGLQLAAALHPAQKALTTEKSLNGKRFVITG 626

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R +A+  + + G  VS  +SR+TD ++VG+  GSKL +AQ+LG+  +NE + + 
Sbjct: 627 TLPTLTREQAKALIQKHGGHVSESVSRQTDYLVVGEKAGSKLRRAQELGIPCINETELIQ 686

Query: 717 L 717
           +
Sbjct: 687 M 687


>gi|163751929|ref|ZP_02159142.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
 gi|161328212|gb|EDP99377.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
          Length = 690

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/720 (35%), Positives = 388/720 (53%), Gaps = 60/720 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP------- 71
           +E+  L  EI+ HD  Y+    PII DSEYD LK +   + + FP L    D        
Sbjct: 10  QEIEHLISEINEHDHRYHVLDDPIITDSEYDRLKIKLKKLENRFPALNLILDLNAVSEGV 69

Query: 72  ------NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                 + P  ++GG+      ++TH  P LSL+ ++N E+   F  R+          +
Sbjct: 70  HTSIRFDSPSRRVGGKALSKFDQITHLKPMLSLDNVFNDEEFEAFHARLTNRLGT----T 125

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEI 184
           + F  EPK+DG  ++I Y  G    AA RGDG  GED++  +R I +IP  L   N P +
Sbjct: 126 LRFCCEPKLDGLAVSILYRDGVLERAATRGDGEIGEDITENVRTIRSIPLKLRGDNFPPL 185

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGEV + K  F +LN+   A G K + NPRNAA+G LR+L+     +R L F+ + L
Sbjct: 186 LEVRGEVIMPKQAFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRSLGFYAYAL 245

Query: 244 GKTSEI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G         A   Y  L +++  GFPV+  V+Q ++   +++YY ++ + RS L Y+ID
Sbjct: 246 GVVEPETWGLADHHYGQLLQLKSWGFPVSAEVKQCDSVSEVIAYYTDIMTRRSALAYEID 305

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVD  + Q +LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+P
Sbjct: 306 GVVIKVDNIAQQLKLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKP 365

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           + +GG  ++NATLHN D I  L            +++ D V+V+RAG+VIP++V I+  +
Sbjct: 366 IFVGGVTVSNATLHNADEIARL-----------GVKIKDTVIVRRAGDVIPQIVAIVAEK 414

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA    FP  CP+C S V R      G++VA  RCTGGL C AQ+ E +KHF SR A
Sbjct: 415 RPDDACEIEFPQTCPVCDSLVER----IEGEVVA--RCTGGLFCEAQRKEAIKHFASRKA 468

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+G+G + ++     E     +  PAD+F L     T   ++      G  S TNL  
Sbjct: 469 LDIDGMGDKVVEQLIDKE----LVESPADLFKLSASAITMLDRM------GLKSATNLVA 518

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   +  +  RF+++LGIR VG   A +LA Y+ S                 +    I+
Sbjct: 519 AIEVAKKTTFPRFLYALGIREVGEATAANLANYFKSLDKLKAA----------NAEEFIK 568

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQ 659
           V  VG I+AQ +  F+    N+  V++L++         E    S  ++ +  V TGTL 
Sbjct: 569 VDDVGTIVAQHLTHFFAQSHNVEVVDSLIEAGVNWPVIEEVAEESLSLKGQTWVLTGTLT 628

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R+ A+  +  LGA V+A +S+ TD ++ G+  GSKL KAQ LG+KI++E+  L +L 
Sbjct: 629 QLNRNDAKAQLQALGAKVAASVSKNTDCLVAGEAAGSKLTKAQDLGIKILDEDGLLAVLA 688


>gi|282850287|ref|ZP_06259666.1| DNA ligase (NAD(+)) [Veillonella parvula ATCC 17745]
 gi|282579780|gb|EFB85184.1| DNA ligase (NAD(+)) [Veillonella parvula ATCC 17745]
          Length = 667

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/709 (32%), Positives = 371/709 (52%), Gaps = 46/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  ++N +++R F  R+ +           + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFGNRVEKELG---HKPSSYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRIGEDVTANVRTIKSIPLFL-DNAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P     R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITANRNLAFFAYAIGSEVGANIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +    F VN   R   T   ++   +     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLKSLENFKFSVNPHYRVCKTIDEVIEAIDYWGDKRHELPYDTDGMVIKVNSFDDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R+    PF+ P+ CP+
Sbjct: 357 DFI-----------DEKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +  ++      G  S  NL  +I+  ++  L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAIDDSKSRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S   F     + +          + V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAATTIANVVQSIDRFMTITKDEL----------VAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P +   +E L +          +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPAHKEIIEGLTQAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           V+  +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL++    +
Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVINEEEFVELLKELGEDI 667


>gi|74316642|ref|YP_314382.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
 gi|123745545|sp|Q3SL40|DNLJ_THIDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|74056137|gb|AAZ96577.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
          Length = 686

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/709 (34%), Positives = 372/709 (52%), Gaps = 52/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    +   ++L +EI  H+  YY    P I D+EYD L    +A+  A P+L  +   
Sbjct: 1   MADRDVQARAAALRREIERHNYAYYVLDAPTIPDAEYDRLYHELEALEAAHPELVAA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQK-KDDNSIFF 128
           + P  ++GG+       V H++P LS+    +      R F  R+ +       D  + +
Sbjct: 58  DSPTRRVGGQPLAGFKPVRHAVPMLSIRTETDTTAAGARAFDVRVRKELGLAPADPPVEY 117

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEV 187
             E K DG  I +RYE G  V AA RGDG +GEDV+  +R + TIP  L  +  P ++EV
Sbjct: 118 AAELKFDGLAINLRYEAGVLVAAATRGDGETGEDVTQNVRTVRTIPLRLHGDAPPAVLEV 177

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246
           RGEV++ ++DF   N +  A G+    NPRN A+G +R+L+P     R L+F+ +GLG+ 
Sbjct: 178 RGEVFMRRDDFERYNAQQRAAGKPTLVNPRNGAAGSIRQLDPAIAGQRPLSFYAYGLGEV 237

Query: 247 SEIF--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                        L  ++ LG PV+      N    ++++++++ + R  LP+DIDG+VY
Sbjct: 238 VGWPDAPATHGATLDALQGLGVPVSAERCVCNGVDDLIAFHDDIAARRDQLPFDIDGVVY 297

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+ F+LQ++LG   R PRW ++HK+  ++  T +L I + +GRTG LTPVARL PV +G
Sbjct: 298 KVNAFALQRELGFLTREPRWAVAHKYPAQEQLTTVLGIGVHVGRTGALTPVARLAPVFVG 357

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D I             +D RVGD V+V+RAG+VIP++V  ++  R   
Sbjct: 358 GVTVTNATLHNQDEIDR-----------KDTRVGDTVIVRRAGDVIPEIVATVLERRPQP 406

Query: 425 AQP----FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
             P          CP C S VVR          A  RCTGGL C AQ+ + L HF SR A
Sbjct: 407 EPPRFNILQSYPVCPECGSHVVRLEGE------AVARCTGGLYCPAQRKQALLHFASRRA 460

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+G+G++ +D     E     +R PAD++ L         ++       + S  NL  
Sbjct: 461 MDIDGVGEKLVDQLVSRE----LVRTPADLYRLPLETLAGLERMA------EKSARNLIQ 510

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   ++ +L RFI++LGIR+VG   AR LA+++ +           +          + 
Sbjct: 511 AIETSKSTTLARFIYALGIRNVGETTARDLARHFGALDALLGANETAL----------LG 560

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           V  VG I+AQ+I +F+  P N+  V  L    V        +     +  K LV TGTL 
Sbjct: 561 VRDVGPIVAQSIAQFFAEPHNLEVVGKLRALGVHWPETTGMQQSGGILSGKTLVLTGTLP 620

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            + R +A+E +   G  V+  +S+KTD ++ G+  GSKL KA++LGV I
Sbjct: 621 ALTRDQAKERIESAGGKVAGSVSKKTDYVVAGEEAGSKLAKARELGVTI 669


>gi|313898151|ref|ZP_07831690.1| DNA ligase (NAD+) [Clostridium sp. HGF2]
 gi|312957179|gb|EFR38808.1| DNA ligase (NAD+) [Clostridium sp. HGF2]
          Length = 665

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/700 (34%), Positives = 368/700 (52%), Gaps = 47/700 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L   +      YY   +P   D EYD   +   A+   FP      DPN    +
Sbjct: 3   QQRILELRSILDRLAYEYYVLDQPSKSDQEYDRYYQELVALEDEFPQY---RDPNSITQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +  KV H    LSL   +N+EDL  F  R+          +  + +E KIDG 
Sbjct: 60  VGGVVLDAFTKVEHKRTMLSLGNAFNLEDLHAFDERVREVVP-----NARYVVELKIDGL 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ Y  G+FV A  RGDG  GEDV+  ++ IP+IP  + L     +EVRGEVY+    
Sbjct: 115 AMSLIYRDGRFVQALTRGDGVVGEDVTHNVKTIPSIPMHIPLQ--GEVEVRGEVYMPNAS 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E    G + +ANPRNAA+G +R+L+ +    R L+ F +      E       E
Sbjct: 173 FQMLNEEREKNGEELFANPRNAAAGSIRQLDSSVAAKRKLDAFWYYFVNAQEYDIHSHEE 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQKM  +   VN   +       +  +  E+   R+ LPY IDG+V KVD+   Q +LG
Sbjct: 233 ALQKMSEMHLRVNPLRKVCERIDEVWQFIEEITEQRNDLPYAIDGMVIKVDDLDAQNRLG 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + PRW I++KF  ++  T+LLDI + +GRTG +TP A LEPV + G  ++ A LHNE
Sbjct: 293 STVKVPRWAIAYKFPAEEVITKLLDIVVTVGRTGRITPNAVLEPVRVAGTTVSAAQLHNE 352

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK            +DIR+ D V+V++AG++IP+VV  ++  R+     + FP+ CPI
Sbjct: 353 DMIK-----------EKDIRIHDDVVVRKAGDIIPEVVRPLLERRNDTQAVYHFPTHCPI 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR          AAH C     C A+ +E + HF SRDA +I+ LG ++++FF K
Sbjct: 402 CGSELVRFPEE------AAHYCIN-QDCPARVVESMIHFASRDAMDIDTLGDKKVEFFHK 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +    DI+ L+  +Q    ++ ++ GF + SV  L D+I   +   LE  I+ 
Sbjct: 455 Q----GFLNTIEDIYCLKEHRQ----ELIDLEGFKEKSVDKLLDAIEDSKQNPLEDLIYG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG + A+ LAK++LS       ++ ++A N ++    + +  +G I A++I  F+
Sbjct: 507 LGIRQVGKKAAKVLAKHFLS-------MDALMAANEEEL---VAIKDIGQITAESITAFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             P+N+  +  L           E+   S    K +V TGTL ++ R+ A+  +  LGA 
Sbjct: 557 HEPKNMELIAHLKGYGLRMDTEAEQIQESSFSGKTIVLTGTLTQMTRNDAKALLESLGAN 616

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           VS  +S+KTD++I G+  GSKL KA  LGV  M+E+ F+ 
Sbjct: 617 VSGSVSKKTDLVIYGEAAGSKLTKANSLGVMTMDEDTFMK 656


>gi|134034096|sp|Q4UN15|DNLJ_RICFE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 689

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/695 (38%), Positives = 406/695 (58%), Gaps = 29/695 (4%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
            +I+ ++  YY    P++ DSEYD L      +   FP L      N P  KIG ++   
Sbjct: 21  DKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLVLE---NSPSKKIGAKITNK 77

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
             K+TH IP LSL   ++ +D+R F+ RI  F +  +   IF   EPKIDG   +  Y+ 
Sbjct: 78  FAKITHQIPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPIF--CEPKIDGLSFSAIYKN 135

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G     A RGDG+ GED++A I+ I   P  +  N PE +EVRGE+YI K DFL LN E 
Sbjct: 136 GLLTTGATRGDGYVGEDITANIKTIKNFPHKI-DNAPEFLEVRGEIYIEKQDFLNLNKEQ 194

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
              GR  +ANPRNAA+G LR+L+ +    R L +FV+  G T +  A  Q ++L K++  
Sbjct: 195 EEQGRDKFANPRNAAAGSLRQLDASITAQRSLKYFVYSGGVTEQNLASSQEQLLIKLKEF 254

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF VN   +  N+   I ++Y  +K+ R  LPY+IDG+VYK+++F+LQ ++G  ARSPR+
Sbjct: 255 GFSVNEISKLTNSEEEIFTFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRF 314

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ ATLHN   I     
Sbjct: 315 ATAHKFPAIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEI----- 369

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   +D+R+ D V ++RAG+VIPK+  + + +R  D   F  P FCP C S++   
Sbjct: 370 ------MRKDVRIDDYVFLQRAGDVIPKITGVDIGKRPNDTIAFDTPLFCPSCNSKL--- 420

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                       RC  GL C AQ  ER++HFVS++A +IEGLG++Q++F          I
Sbjct: 421 ---HYAPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDK----GLI 473

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
             P DIF L+ +  +S TK+EN+ G+G  SV NL+ +I + +N+SL RFI++LGIRH+G 
Sbjct: 474 SNPLDIFFLKEKNDSSLTKLENMDGWGKKSVENLFKNIEQSKNVSLPRFIYALGIRHIGE 533

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
           + A+ LA+ + SY NF  ++  +  ++ D +  L  +  +GD I   I++F+    N   
Sbjct: 534 QNAKLLAREFGSYANFIAQMELLSKNDLDIYQKLNDLEGIGDKILVDIIDFFDVKENTTL 593

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           ++ L + ++      E    S +  K +VFTG+L  I R +A+    +LGA V+A +S  
Sbjct: 594 IKKLGEVLNIE-DYKETREQSSLTGKIIVFTGSLPTISRAEAKATAEKLGAKVAASVSSN 652

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           TD+++ G + GSKL+KA++L +KI+ EE++L L++
Sbjct: 653 TDLVVAGVDAGSKLKKAKELNIKIIGEEEWLTLIK 687


>gi|67458584|ref|YP_246208.1| NAD-dependent DNA ligase LigA [Rickettsia felis URRWXCal2]
 gi|67004117|gb|AAY61043.1| DNA ligase, NAD-dependent [Rickettsia felis URRWXCal2]
          Length = 706

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/695 (38%), Positives = 406/695 (58%), Gaps = 29/695 (4%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
            +I+ ++  YY    P++ DSEYD L      +   FP L      N P  KIG ++   
Sbjct: 38  DKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLVLE---NSPSKKIGAKITNK 94

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
             K+TH IP LSL   ++ +D+R F+ RI  F +  +   IF   EPKIDG   +  Y+ 
Sbjct: 95  FAKITHQIPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPIF--CEPKIDGLSFSAIYKN 152

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G     A RGDG+ GED++A I+ I   P  +  N PE +EVRGE+YI K DFL LN E 
Sbjct: 153 GLLTTGATRGDGYVGEDITANIKTIKNFPHKI-DNAPEFLEVRGEIYIEKQDFLNLNKEQ 211

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
              GR  +ANPRNAA+G LR+L+ +    R L +FV+  G T +  A  Q ++L K++  
Sbjct: 212 EEQGRDKFANPRNAAAGSLRQLDASITAQRSLKYFVYSGGVTEQNLASSQEQLLIKLKEF 271

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF VN   +  N+   I ++Y  +K+ R  LPY+IDG+VYK+++F+LQ ++G  ARSPR+
Sbjct: 272 GFSVNEISKLTNSEEEIFTFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRF 331

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ ATLHN   I     
Sbjct: 332 ATAHKFPAIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEI----- 386

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   +D+R+ D V ++RAG+VIPK+  + + +R  D   F  P FCP C S++   
Sbjct: 387 ------MRKDVRIDDYVFLQRAGDVIPKITGVDIGKRPNDTIAFDTPLFCPSCNSKL--- 437

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                       RC  GL C AQ  ER++HFVS++A +IEGLG++Q++F          I
Sbjct: 438 ---HYAPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDK----GLI 490

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
             P DIF L+ +  +S TK+EN+ G+G  SV NL+ +I + +N+SL RFI++LGIRH+G 
Sbjct: 491 SNPLDIFFLKEKNDSSLTKLENMDGWGKKSVENLFKNIEQSKNVSLPRFIYALGIRHIGE 550

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
           + A+ LA+ + SY NF  ++  +  ++ D +  L  +  +GD I   I++F+    N   
Sbjct: 551 QNAKLLAREFGSYANFIAQMELLSKNDLDIYQKLNDLEGIGDKILVDIIDFFDVKENTTL 610

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           ++ L + ++      E    S +  K +VFTG+L  I R +A+    +LGA V+A +S  
Sbjct: 611 IKKLGEVLNIE-DYKETREQSSLTGKIIVFTGSLPTISRAEAKATAEKLGAKVAASVSSN 669

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           TD+++ G + GSKL+KA++L +KI+ EE++L L++
Sbjct: 670 TDLVVAGVDAGSKLKKAKELNIKIIGEEEWLTLIK 704


>gi|198283038|ref|YP_002219359.1| NAD-dependent DNA ligase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666742|ref|YP_002425245.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|254781244|sp|B7J653|DNLJ_ACIF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781245|sp|B5EP61|DNLJ_ACIF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|198247559|gb|ACH83152.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518955|gb|ACK79541.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 671

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/704 (34%), Positives = 378/704 (53%), Gaps = 46/704 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L  E+   ++ YY+   P + D+EYDA  R    +    P     +  + P  ++
Sbjct: 10  ERIQQLRAELVAANNAYYREDSPTLSDAEYDARLRELRTLEDRNPQW---QSADSPTQRV 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G        +V ++IP  SL+ +++ +    ++ R+ +   ++D   +  + EPK DG  
Sbjct: 67  GAAPVEVFGEVHYAIPLTSLDNVFDQDGFSDWLARVQKGLGRED---VPLSAEPKFDGLS 123

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197
           + IRY +GK V A  RGDG +GEDV+A +R I  +P  L+  + PE++EVRGEV I    
Sbjct: 124 VNIRYIEGKLVQAGTRGDGQTGEDVTANVRTIRNVPLQLTGKDWPELLEVRGEVVIPVAA 183

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E +  G  P+ANPRNAA+G LR+L+ +    R L +F  G G++S    K    
Sbjct: 184 FRRLNGERLRAGDNPFANPRNAAAGSLRQLDSSVTAKRPLAYFPWGWGESSVPLGKSHIA 243

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +++++   GF V + +R  +       Y++EM+ IR  +P++IDGLV+KVD+   ++QLG
Sbjct: 244 VMERLSAWGFEVTSYLRGVHELTECQRYFSEMQKIREGMPFEIDGLVFKVDDLLAREQLG 303

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW I++KF   +  T + DI   +GRTG++TPVA L+PV +GG  ++ A+LHN+
Sbjct: 304 FTARAPRWAIAYKFPAHEERTVVEDILASVGRTGVITPVAVLKPVQVGGVTVSRASLHNQ 363

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D +             +DIRVGD VLV+RAG+VIP+VV +I  ER P  QP+  P  CP+
Sbjct: 364 DEVDR-----------KDIRVGDTVLVRRAGDVIPEVVMVIKEERPPATQPWHMPQRCPV 412

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V+R  N       +AHRC GGL C AQ++  ++HF SR A +I GLG++ ++    
Sbjct: 413 CGSEVLRLANE------SAHRCMGGLYCPAQRMGAIRHFASRRAMDIRGLGEKLVEQLV- 465

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +   ADI+ L         ++ +       S   L   I++ R+ SL RF+++
Sbjct: 466 ---GHGLVHTVADIYHLDEAALCGLERMAS------RSAQKLLAEIDRSRHTSLPRFLYA 516

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A+SLA Y+            ++            +P VG I+A+++  F+
Sbjct: 517 LGIRQVGEGTAKSLAIYFGDLDPLMAATPELLQ----------NIPDVGPIVAESVAHFF 566

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             P N   + AL +         +       +   LV TG L  + R +A+  +   G  
Sbjct: 567 AQPHNRDVIAAL-RAAGVQWAVVQPQKGGRFQGMTLVLTGALDNMTREEAKTAIENAGGK 625

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S KT  ++VG +PGSK EKA +LGVK + E QFL +  +
Sbjct: 626 VSGSVSAKTSYVVVGKDPGSKAEKAAKLGVKQLTEAQFLAMFSE 669


>gi|295397184|ref|ZP_06807287.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563]
 gi|294974573|gb|EFG50297.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563]
          Length = 670

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/706 (33%), Positives = 385/706 (54%), Gaps = 53/706 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
             + +L + ++ +   YY    P I D+EYD L R    +   +P   ++E    P  ++
Sbjct: 12  ARIEALTRLLNDYAYQYYALDNPTISDTEYDKLYRELQDLEAKYPTFIQAE---SPTQRV 68

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G  ++ +  KVTHS P +SL   +N +++ KF+  + +      +  + F  E KIDG  
Sbjct: 69  GDVVSEAFTKVTHSQPMMSLGNAFNFDEVAKFVEDVKK----NVNGQVRFVCELKIDGLS 124

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + I+YE G++V AA RGDG  GED++  +R I ++P  L  +I   IEVRGE+Y+ K+ F
Sbjct: 125 VAIQYENGRYVRAATRGDGVVGEDITNNVRTIKSVPMKLRQDI--DIEVRGEIYMPKDAF 182

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
           LALN++    G   +ANPRN+A+G +R+L+     +R LN F++    + E+  K Q ++
Sbjct: 183 LALNEKREEAGLPTFANPRNSAAGSIRQLDSKVTASRNLNIFLYSGVFSDELPIKSQQDL 242

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            Q     GF VN   R   TF  I +Y  EM + R  L Y IDG+V KVD+FS Q+ LG 
Sbjct: 243 FQHFPDYGFRVNPLTRVCETFEEIQAYIEEMTAKRHELSYGIDGIVIKVDDFSDQETLGY 302

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++  T + DI+  +GRTG++TP A +EPV + G+ +  A+LHN D
Sbjct: 303 TVKAPKWAIAYKFQAEEVETTIHDIEWTVGRTGVVTPTAIMEPVLLDGSTVQRASLHNMD 362

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+ D V++ +AG++IP+VV +++++R  D+ P+  P+ CP+C
Sbjct: 363 LIEA-----------KDIRLNDTVVIHKAGDIIPEVVTVVLDKRPEDSTPYPKPTTCPVC 411

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC    AC AQ  E+L HFVSR+A NI G+G   L+  +  
Sbjct: 412 HSDLVHLEDE------VALRCVNP-ACPAQAKEKLYHFVSRNAMNITGVGPSVLEQMYDK 464

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
            +    +  PAD++ +++ Q  +  K       GD +   +  +I   +  SLER +F L
Sbjct: 465 AN----VHSPADLYQVKKDQLMALDK------IGDKASDKIIQAIEDSKENSLERLLFGL 514

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA+ AR +A+ Y S Q               +   L  +  +G+ IA +IV F+ 
Sbjct: 515 GIRHVGAKAARQIAEVYPSMQEIM----------TKERTDLTNIEGIGETIADSIVAFFA 564

Query: 618 NPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
                  ++AL++          +    + + S    K +V TG L +  R +A++ +  
Sbjct: 565 TDGVRETIDALVENGVNMQYKGPVKAEVEAIDSFWSGKTVVLTGKLSQYTRPEAKKAIEA 624

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + +E+  +  L
Sbjct: 625 LGGNVTGSVSKKTDILVAGEDAGSKLAKAENLGVTVFSEQDMVDKL 670


>gi|259502571|ref|ZP_05745473.1| DNA ligase [Lactobacillus antri DSM 16041]
 gi|259169461|gb|EEW53956.1| DNA ligase [Lactobacillus antri DSM 16041]
          Length = 678

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/720 (32%), Positives = 380/720 (52%), Gaps = 48/720 (6%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P++ L++  A++E++ L Q+++     YY+   P + D  YD   +R   +   FP+
Sbjct: 3   KQTPVDQLTLAAAKQEIAPLRQQLTKWGREYYEQDNPSVEDYVYDRAYQRLVELEQRFPE 62

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L  S   + P   +GG     L KVTH IP LS+  +++I++L  F  R         + 
Sbjct: 63  LKTS---DSPTQHVGGGPTGELTKVTHEIPMLSMGDVFSIDELMDFNQRQQD--NDDVNV 117

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           +  + LE KIDG  +++ YE G+ V  + RG+G+ GEDV+A +  I ++P  L    P  
Sbjct: 118 TPEYNLELKIDGLSLSLVYENGRLVQGSTRGNGNIGEDVTANVMTIKSVPHQLPE--PLS 175

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL 243
           +E RGE Y+ K  F+ LN E  A G   +ANPRNAA+G LR+L+P    R  L  F++ +
Sbjct: 176 LEFRGECYMPKESFVKLNQEREAAGLPIFANPRNAAAGSLRQLDPQVTARRDLATFMYYV 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            +  ++  + Q   L +MR LGF VN   R   +   I  Y  E  + R  L Y IDG+V
Sbjct: 236 PEYQKLGVRTQAAALNRMRELGFSVNPHNRVVRSRQEITDYIEEYTAQRDQLSYGIDGIV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++   +  LG   + PRW I++KF  ++ +T + +I   +GRTG +TP A ++P+ +
Sbjct: 296 EKVNDLDTENALGNTVKVPRWEIAYKFPPEEQATVVREIVWTVGRTGNVTPTAVMDPIQL 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A+LHN DY++            +DIR+GD V + +AG++IP++  + + +R  
Sbjct: 356 AGTTVSRASLHNPDYLR-----------EKDIRLGDTVYLHKAGDIIPEISRVDLKKRPA 404

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+QP+  P+ CP+C S +V            A RC   + C AQ  E L HF SR+A NI
Sbjct: 405 DSQPYQVPTTCPVCGSDLVHLDGE------VALRCVNPM-CPAQIKEGLAHFASRNAMNI 457

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG + +   +  +     +   AD+++L   Q  +  K      FGD S TNL  SI 
Sbjct: 458 DGLGPKIIQQLWDKQ----LVHDVADLYSLTHDQLLTLDK------FGDKSATNLLTSIA 507

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             RN S+ER +F LGIRHVGA+ AR + +++ + +         +A              
Sbjct: 508 NSRNNSVERLLFGLGIRHVGAKAARLIMEHFQTLERLMAANAEEVAAV----------DG 557

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKI 661
           +G  I +++  ++ N + +  V+ L          G      +SE   +++V TG L+++
Sbjct: 558 IGPTIGESVQTYFANEQVVTLVDELRAAGVNFDYHGASAPVAASEWNGRRVVLTGKLEEL 617

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A+ ++   GA V+  +S+KTDI+I G   GSKL KAQ LG+ + +E +F   +++ 
Sbjct: 618 TRTDAKNWLEAHGAKVTGSVSKKTDIVIAGTAAGSKLTKAQDLGITVWDEARFAQAMKEE 677


>gi|160889578|ref|ZP_02070581.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492]
 gi|317480069|ref|ZP_07939180.1| DNA ligase [Bacteroides sp. 4_1_36]
 gi|156861095|gb|EDO54526.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492]
 gi|316903746|gb|EFV25589.1| DNA ligase [Bacteroides sp. 4_1_36]
          Length = 665

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/707 (33%), Positives = 363/707 (51%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  E+  H+  YY  + P I D E+D L R    +    P+    +D N P  
Sbjct: 3   VKEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEY---QDDNSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYERVKKALN----EDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL  N P+  E+RGE+ +   
Sbjct: 116 TSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNYPKSFEIRGEILMPWV 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L    E+   G Y
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ     GF  +   R+A++   +  Y N   + R  LP   DG+V KV+    QK L
Sbjct: 235 ENLQAAASWGFKTSEHTRKAHSLEEVFEYINYWDTERKNLPVATDGIVLKVNSLRQQKNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIRFEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++ L+      T  I+N+   G+ S  N+ + I   + +  ER +
Sbjct: 458 YR----LGLIKDTADLYQLK------TDDIKNLERMGEKSAENIVNGIAASKEVPFERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D   L  +  +G+ IAQ+I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSFTDIEEL----------ENADLEKLKNIDEIGEKIAQSIIT 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ NP N   VE L           E       ++  + +V +G      R + +E + +
Sbjct: 558 YFSNPANRELVERLKSNGLQLHRTEEDLSGYTDKLAGQSIVISGVFTHHSRDEYKEMIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G +KLEKAQ+LGVKIM+E++FL LL
Sbjct: 618 NGGKNVGSISSKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLALL 664


>gi|294791934|ref|ZP_06757082.1| DNA ligase, NAD-dependent [Veillonella sp. 6_1_27]
 gi|294457164|gb|EFG25526.1| DNA ligase, NAD-dependent [Veillonella sp. 6_1_27]
          Length = 667

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/707 (32%), Positives = 369/707 (52%), Gaps = 46/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  +++ +++R F +R+ +           + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFASRVEKELG---HKPSAYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  + PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYL-EDAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEVGANIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +LQ +    F VN   R   T   ++   N     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLQSLETFKFSVNPHYRVCKTIDEVIDAINYWGEKRHELPYDTDGMVIKVNSFEDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R     PF+ P+ CP+
Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPTVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +  ++      G  S  NL  +I   +   L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAIADSKTRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F       +          + V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAAGTIANVVKSMERFLTITKEEL----------VAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P ++  +E L            +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPAHVEIIEGLTAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL++   
Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLRELGE 665


>gi|313893283|ref|ZP_07826858.1| DNA ligase (NAD+) [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442179|gb|EFR60596.1| DNA ligase (NAD+) [Veillonella sp. oral taxon 158 str. F0412]
          Length = 667

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/707 (32%), Positives = 370/707 (52%), Gaps = 46/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  ++N +++R F +R+ +           + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFASRVEKELG---HKPSAYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYL-ENAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEEGASIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +    F VN   R   T   ++   N  +  R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLKSLENFKFSVNPHYRVCQTIDDVIETINYWEEKRHDLPYDTDGMVIKVNSFDDQEALG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R     PF+ P+ CP+
Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPTVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +  ++      G  S  NL  +I   ++  L+R ++ 
Sbjct: 459 NK----LIANVVDLYHLTVDQLVTMDRM------GKKSAENLVKAIGDSKSRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F       +          + V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAAATIANVVQSMERFMTITKEEL----------VAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P +   +E L +          +   ++++ + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPAHAAIIEGLTQAGLKMTVDVVEAAGNQMDGEIVVLTGKLEIMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KT +++ G++ GSKL KA +LG+++MNEE+F+ LL+    
Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVMNEEEFVELLRNLGE 665


>gi|269216606|ref|ZP_06160460.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122]
 gi|269130135|gb|EEZ61217.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122]
          Length = 709

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/730 (32%), Positives = 374/730 (51%), Gaps = 56/730 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +AL  +  R  + +L +EI +H   YY    P I D+ +D+L R    +  A P+L    
Sbjct: 12  QALDADGTRARVRALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELRELEQAHPELI--- 68

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           DP  P  ++GG +      V H++   SL+    +E+L +++ R          + + F 
Sbjct: 69  DPTSPTQRVGGYVGEQFSPVRHAVRMYSLDNAMGLEELDEWLARTVEAIG----HPVPFC 124

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-------NIP 182
            E KIDG+ I + YE G    AA RGDG +GEDV+  +R +  IP  L         +  
Sbjct: 125 CELKIDGSSIALTYEAGVLTKAATRGDGTTGEDVTVNMRTVRDIPLRLRDAGIEGLVDPD 184

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
             IEVRGEVY+ K  F +LN    A GR+ +ANPRNAA+G LR+ +PT    R L+ F++
Sbjct: 185 ASIEVRGEVYMPKRSFESLNAAAAAQGRQGFANPRNAAAGSLRQKDPTVTQGRDLSTFLY 244

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +   + + A+ Q+++L+ +   GF VN  V++ +T   +  +  E+   R +LPY IDG
Sbjct: 245 AIADDAPVRAESQWDLLKWLGDCGFHVNPDVKRCDTPEEVHRFCEEVADRRDSLPYGIDG 304

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVD F++Q+++G  AR+PRW I++KF  ++ +T L DI +Q+GRTG +TPVA L+PV
Sbjct: 305 VVVKVDSFAIQREMGFTARAPRWAIAYKFPPEEKTTVLRDISVQVGRTGAITPVAELDPV 364

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+++  ATLHN D +             +D+RVGD ++V++AG+VIP+V+  +++ R
Sbjct: 365 RVDGSVVARATLHNLDEVHR-----------KDVRVGDTIIVRKAGDVIPEVLGPVLSLR 413

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              A P+  P+ CP C S +VR+         AA RC   + C AQ  ERL H+ SR A 
Sbjct: 414 PEGAIPWEMPAMCPSCGSPLVREDGE------AAFRCV-SIDCPAQATERLIHWASRGAM 466

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-----KIENILGFGDVSVT 536
           +I+G+G++ +    +S      +   AD ++L      +       K    +  G     
Sbjct: 467 DIDGMGEEIVARLVESGR----LTDVADYYSLSEYDLATLETGRTNKEGEPVHLGSTIAA 522

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            L  SI   +     R +F LGIRHVG      +A  Y S     +     +A       
Sbjct: 523 KLIASIEASKARPFGRVLFGLGIRHVGKTTGAQIAAAYPSMDALMRASEEDLAA------ 576

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVF 654
               +  VG IIA++I  F + P N   +  L              ++V   +     V 
Sbjct: 577 ----IDGVGGIIAKSIRAFLETPDNREVIHRLGVLGVRMEDVRTEGEDVPQTLAGITFVL 632

Query: 655 TGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           TG+L    + R +A   +  +GA VS  +S+KT  +I G+  GSK +KA  LGV +++E 
Sbjct: 633 TGSLVESGMTRDEAGSRLKAMGAKVSGSVSKKTGYVIAGEAAGSKYDKAVALGVPVLSEA 692

Query: 713 QFLFLLQQYN 722
             L LL+  +
Sbjct: 693 DLLRLLETGS 702


>gi|257869253|ref|ZP_05648906.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2]
 gi|257803417|gb|EEV32239.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2]
          Length = 676

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/710 (32%), Positives = 373/710 (52%), Gaps = 53/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++    L   ++ +   YY   +P + D  YD L +    +   +P L      + P 
Sbjct: 7   EVQQRAEELRTTLNQYAYEYYVKDQPSVEDYVYDRLYKELVQLETDYPQLVTE---DSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +     KV H IP  SL  +++ E++  F  R+ +   +    ++ +  E KID
Sbjct: 64  QRVGGIVLPGFEKVIHDIPLYSLNDVFDKEEIIAFDARVQKALGR----AVDYVCELKID 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I+++YE G+FV  A RGDG  GE+++  ++ + +IP  L L  P  +EVRGE Y+ K
Sbjct: 120 GLSISLKYENGRFVRGATRGDGTVGENITENLKTVKSIP--LKLKEPVSLEVRGECYMPK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F+ LN      G + +ANPRNAA+G LR+L+      R L+ F++ L     I A  Q
Sbjct: 178 ASFIRLNQVREEEGLEVFANPRNAAAGSLRQLDTRIAASRNLSTFLYTLADFGPIEAHDQ 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +  L ++  LGF  N+  R   T   + +Y  E    RS LPY+IDG+V KV++FS Q  
Sbjct: 238 FSALDELDSLGFRTNHERRLCRTIDEVWAYIEEFHEKRSELPYEIDGVVIKVNDFSDQDT 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++PRW  ++KF  ++A T + +I+  +GRTG++TP A + PV + G  ++ A+LH
Sbjct: 298 LGFTVKAPRWAAAYKFPPEEAETTIEEIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N DYI+            +DIR+ D V++ +AG++IP+V +++ ++R   ++P+  P+ C
Sbjct: 358 NVDYIRA-----------KDIRLNDSVIIYKAGDIIPEVANVLTDKRSKASEPYPIPTHC 406

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC S +V            A RC     C AQ  E L HFVSR+A NIEGLG + L+  
Sbjct: 407 PICDSELVHLDEE------VALRCINP-KCPAQMKEGLSHFVSRNAMNIEGLGPRVLEQM 459

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       +   AD++ L   Q  +  KI+      + S  N+  +I   +  S+ER I
Sbjct: 460 YEKH----LVADVADLYYLTEEQLLTLDKIK------EKSANNILSAIEASKENSVERLI 509

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRHVG++ AR LA++Y + +N ++           D   ++ +  +G  IA ++V 
Sbjct: 510 FGLGIRHVGSKAARILAEHYRNLRNLSKA----------DESEIVSLETIGQTIADSVVT 559

Query: 615 FYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++ N      ++ L K                 + S  + K +V TG L    R +A+E 
Sbjct: 560 YFNNEEVHDLLDELEKAGVNFDYLGLKNEELSAIDSPFKGKTVVLTGKLTHFTREEAKER 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LG  V+  +S+KTDI++ G+  GSKL KAQ LG+ +  E Q +  ++
Sbjct: 620 IENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGITVWEENQMVAAIE 669


>gi|307546309|ref|YP_003898788.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581]
 gi|307218333|emb|CBV43603.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581]
          Length = 700

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/706 (33%), Positives = 388/706 (54%), Gaps = 44/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + E + L  E+   +  YY   +P + D++YD   RR   I   +P+L R   P+ P  
Sbjct: 26  IQDEAARLRAELDDANHRYYVLDEPRMTDADYDRKLRRLQEIETEYPELVR---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G        ++ H++P LSL+  ++ ++L  F+ R+    +  D  SI F  EPK+DG
Sbjct: 83  RVGAAPADGFPEIEHAVPMLSLDNAFDEDELAAFVKRVADRLE-IDGESIAFCCEPKLDG 141

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
             +++ YE+G+      RGDG +GE +++ +R + +IP  L   + P+++EVRGEV +  
Sbjct: 142 AAVSLVYERGELTAGVTRGDGRTGEGITSNLRTLKSIPLKLRGRHWPDVLEVRGEVTMRH 201

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS-EIFAKG 253
            DF A+ND+    G K +ANPRNAA+G LR+L+P     R L F  +   +   +     
Sbjct: 202 ADFEAMNDKAREEGGKVFANPRNAAAGSLRQLDPRITDQRPLEFSAYQAARIEPDAGDAS 261

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              ++ ++   GF  +  +R      G++ Y   +   R  L YDIDG+V KVD+  LQ+
Sbjct: 262 HSALMARLSEFGFRTSAELRVVRGTEGVIEYCRALGEKRDALGYDIDGVVIKVDDLRLQR 321

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I+ KF  ++  TRL D++ Q+GRTG +TPVARLEPV++ G  ++NATL
Sbjct: 322 ELGFVARAPRWAIAFKFPAQEQVTRLNDVEFQVGRTGAITPVARLEPVSVAGVTVSNATL 381

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L            + +GD V ++RAG+VIP+VV +   +R  DA+   FP  
Sbjct: 382 HNADEIARL-----------GVMIGDTVAIRRAGDVIPQVVRVQEEDRPDDAREIVFPER 430

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S++ R  +       A  RC+GGL C+AQ+ E LKHF SR A +IEGLG++ +D 
Sbjct: 431 CPVCDSQIERLEDE------AVARCSGGLYCAAQRKEALKHFASRRALDIEGLGEKLIDQ 484

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + +     ++ PAD+F L+        ++  +   G+ S  NL  ++ K +  +L RF
Sbjct: 485 LVELD----WVQTPADLFALEA------ERLATLPRMGEKSSQNLVTALEKAKATTLPRF 534

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG   A +LA+++ + +       + +           +V  VG I+A  + 
Sbjct: 535 IFALGIREVGEATAANLARHFGTLEALMDAERDALE----------QVDDVGPIVAAHVH 584

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F++ P N   + AL +          +   + +E +  V TGT++ + R + +  +  L
Sbjct: 585 TFFRQPHNRDTIAALRQAGVHWEEAEVEIGPTLLEGQSWVLTGTMESMTRDEGKARLQAL 644

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           GA V+  +S+KT  ++ G+  GSKL KA+QLGV++++E  FL  L+
Sbjct: 645 GAKVAGSVSKKTACLVAGEAAGSKLTKAEQLGVEVIDEATFLERLE 690


>gi|270296700|ref|ZP_06202899.1| DNA ligase, NAD-dependent [Bacteroides sp. D20]
 gi|270272687|gb|EFA18550.1| DNA ligase, NAD-dependent [Bacteroides sp. D20]
          Length = 665

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/707 (33%), Positives = 364/707 (51%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  E+  H+  YY  + P I D E+D L R    +    P+    +D N P  
Sbjct: 3   VKEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEY---QDDNSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYERVKKALN----EDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL  + P+  E+RGE+ +   
Sbjct: 116 TSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPKSFEIRGEILMPWV 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N T +  R L+ +++ L    E+   G Y
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSTIVASRKLDAYLYYL-LGEELPCDGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ     GF  +   R+A++   +  Y N   + R  LP   DG+V K++    QK L
Sbjct: 235 ENLQAAASWGFKTSEHTRKAHSLEEVFEYINYWDTERKNLPVATDGIVLKINSLRQQKNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIRFEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++ L+      T  I+N+   G+ S  N+ + I   + +  ER +
Sbjct: 458 YR----LGLIKDTADLYQLK------TDDIKNLERMGEKSAENIVNGIAASKEVPFERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D   L  +  +G+ IAQ+I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSFTDIEEL----------ENADLEKLKNIDEIGEKIAQSIIT 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ NP N   VE L           E       ++  + +V +G      R + +E + +
Sbjct: 558 YFSNPVNRELVERLKSNGLQLHRTEEDLSGYTDKLAGQSIVISGVFTHHSRDEYKEMIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G +KLEKAQ+LGVKIM+E++FL L+
Sbjct: 618 NGGKNVGSISSKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLALI 664


>gi|121998657|ref|YP_001003444.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1]
 gi|166215780|sp|A1WY80|DNLJ_HALHL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121590062|gb|ABM62642.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1]
          Length = 711

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/745 (33%), Positives = 385/745 (51%), Gaps = 68/745 (9%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
              + EQA++ ++ L  EIS HD  YY   +P I D+EYDAL R    +  A+PDL    
Sbjct: 4   PTATREQAQQRMAQLRGEISEHDYHYYVLDRPTISDAEYDALFRELQRLEAAYPDLV--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++ G        V H  P LSL+  +  +DL  F  RI          S+ +T
Sbjct: 61  SSDSPTQRVAGTAQEGFEAVVHDTPMLSLDNAFEADDLVDFDRRIRDRLG---VASVVYT 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  +++ Y+ G+ V A  RGDGH+GEDV+A +R + ++P  L  +  P  +EVR
Sbjct: 118 GEPKLDGISLSLTYQDGELVRAGTRGDGHTGEDVTANVRTLRSVPLRLRGDGYPGRLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTS 247
           GEV I K DF  LN   +  G +P+ANPRNAA+G LR+L+P    R  L  F  G+G   
Sbjct: 178 GEVVIRKEDFERLNQARLDAGERPFANPRNAAAGSLRQLDPRITARRPLTLFTFGVGDPL 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +  +  +++L+ +   GF     +          +Y + +   R  LP++IDG V+KVD
Sbjct: 238 ALGVESHWQVLECLAGWGFRTTAPLEHLEGVSACQAYRDRLIEERDALPFEIDGAVFKVD 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + ++++QLG  AR+PRW ++ K   ++A+T +  I   +GRTG +TP+ARL+PV + G  
Sbjct: 298 DLAVREQLGFTARAPRWALAFKLPAREATTVVEAIVPSVGRTGKITPLARLQPVEVSGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN D +  +           D+R GD V+V+RAG+VIP++ D+++ +R   AQP
Sbjct: 358 VARASLHNADELARM-----------DVREGDTVMVRRAGDVIPQITDVVLAKRPEGAQP 406

Query: 428 F---SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           +        CP C S V R          AAHRC GGL C AQ+   + HF SR A +I+
Sbjct: 407 WRFEERVQACPECGSAVQRIEGE------AAHRCVGGLYCPAQREGAILHFASRRALDID 460

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ ++           +   AD+F L   Q     ++      GD S  NL  ++++
Sbjct: 461 GLGEKIVEQLVAK----GLVVDLADLFRLGHAQLAGLERM------GDKSADNLLAALDR 510

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSY----------------------QNFAQ 582
            R+ +L RF+++LGI HVG   AR LA+                              ++
Sbjct: 511 ARSTTLARFLYALGIPHVGEVTARRLAEAAYGLMVAVPRGDRAALRAAAGLDAQTAITSE 570

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGR 638
            +  ++A   DD  +   +  VG ++A+AI  F+  P N   V+ L         P    
Sbjct: 571 ALLRVMAAPADDLEA---IEDVGPVVARAIAGFFAEPHNRQVVDHLCAAGVHWPEPDPPE 627

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
             ++VSS +  +  V TGTL+ + R +A+  +   G  V+  +SRKTD ++ G + GSKL
Sbjct: 628 QAESVSS-LAGRAFVVTGTLETMTRDEAKAAIEACGGRVTGSVSRKTDYLVAGADAGSKL 686

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNT 723
            KA++LGV+++NE     LL     
Sbjct: 687 NKARELGVEVVNESGLRELLAGAGA 711


>gi|197105771|ref|YP_002131148.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1]
 gi|254781386|sp|B4RFE9|DNLJ_PHEZH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|196479191|gb|ACG78719.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1]
          Length = 692

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/716 (40%), Positives = 421/716 (58%), Gaps = 29/716 (4%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +  +E+L+  +A +EL+ L  EI+ HD  YY+   P I D+ YDAL+RR D +  AFP L
Sbjct: 1   MKSVESLTEAEAAEELTRLADEIAAHDIRYYREDAPTISDAAYDALRRRNDELEAAFPHL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R    N P  +IG         V H +P LSL+  ++  D  +F  R+ RF +   D  
Sbjct: 61  IRE---NSPSLRIGAARAEQFAPVEHGVPMLSLDNAFSDADALEFDARVKRFLRL--DEE 115

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEI 184
           + +T EPKIDG   +IRYE G+ V AA RGDG  GEDV+A +R I  IP+ L     PE+
Sbjct: 116 VAYTAEPKIDGLSCSIRYENGRLVRAATRGDGRVGEDVTANVRTIGEIPQKLHGQAWPEV 175

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           IE+RGEVY+   +F ALN+   + G+K YANPRNAA+G LR+++P     R L FF +  
Sbjct: 176 IEIRGEVYLGHAEFAALNEAAASAGQKTYANPRNAAAGSLRQIDPKITAQRPLRFFAYAW 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G  S  FA+ Q+E LQ ++  GF      R      G++  Y EM++ R  L +DIDG+V
Sbjct: 236 GFVSAPFAQTQWEALQALKAWGFRTTPQSRCVKGAEGLMEAYREMEAERPHLGFDIDGVV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD    Q++LG  +R+PRW I+ KF  +QA T L  IDIQ+GRTG LTPVARL PV +
Sbjct: 296 YKVDRLEWQQRLGFVSRAPRWGIARKFPAEQARTVLEAIDIQVGRTGALTPVARLTPVTV 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++TNATLHN D I  L           D+RVGD V+++RAG+VIP+++ +I  ER  
Sbjct: 356 GGVVVTNATLHNADEIARL-----------DVRVGDTVVLQRAGDVIPQILRVIPEERPK 404

Query: 424 DAQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           D+ P+ FP  CP   ++ VVR+    +G      RC+G  AC  Q++  L HFVSR AF+
Sbjct: 405 DSVPYDFPHVCPCPLRTEVVRETT-ASGAETVVRRCSGEFACPFQRINHLLHFVSRRAFD 463

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG++QL  FF+       I+ PADIF L  ++         +   G+ SV NL  +I
Sbjct: 464 IEGLGEKQLTAFFER----GWIKAPADIFRLHEKRDELLA----MERMGETSVGNLLANI 515

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
             RR I L+RFI+ LGIRH+G   A  +A+ Y +  +F + ++ + A + +    L  + 
Sbjct: 516 EARRTIGLDRFIYGLGIRHIGETTATVMARGYGTAAHFLEAMDKVAARDPEAVEELDALD 575

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G  + +A   F+    N   VE L  +++  +   +    + +  K +VFTG L+++ 
Sbjct: 576 QIGGAVIEAAAAFFGEDHNRAMVEDLAGQLTI-LDAEKPKTDTAVAGKTVVFTGALERMT 634

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+    +LGA VS  +S+KTDI++ G   GSKL+ A +LG++++ E+++L ++
Sbjct: 635 RDEAKAQAERLGAKVSGSVSKKTDIVVAGPGAGSKLKTAAELGIQVLTEDEWLEMV 690


>gi|217077826|ref|YP_002335544.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B]
 gi|254781437|sp|B7IDX6|DNLJ_THEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217037681|gb|ACJ76203.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B]
          Length = 665

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/696 (34%), Positives = 375/696 (53%), Gaps = 46/696 (6%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +EI YH+  YY  + P+I D EYD L ++   +   +P+      P  P  K+GG++ 
Sbjct: 13  LREEIEYHNYRYYVLADPVISDEEYDKLLKKLIELEKKYPEF---YSPTSPTQKVGGKVL 69

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               KV HSIP LSL+  +N E++++F  RI +       N + +  E KIDG  + +RY
Sbjct: 70  DGFKKVMHSIPMLSLDNTYNEEEIKEFDERIKKLLG---VNEVEYVCELKIDGISVALRY 126

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E G+FV A  RGDG  GED+S  ++ I +IP  L  N+   IEVRGE+++   +F   N 
Sbjct: 127 ENGQFVTALSRGDGIEGEDISENVKKIKSIPLRLFKNL--TIEVRGEIFMPVKEFEKYNK 184

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
                G +P+ANPRNA +G +R+L+ + +  R L+ F++ +        K Q+E L+ ++
Sbjct: 185 IAEEEGLQPFANPRNATAGTIRQLDSSIVAKRNLDSFIYYVVNPEIYGLKTQWEALKFLK 244

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
            +GF  N   R  +  + ++ ++ EM   R+ L Y IDGLV KV+ F  Q++LGE A++P
Sbjct: 245 EIGFKTNPYSRLCHDVNCVIDFWKEMTKKRTQLDYWIDGLVIKVNNFEYQRKLGETAKAP 304

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW I+ KF   +A +++L+I++ +GRTG++TPVA LEP+N+ G+++  A+LHN DYIK  
Sbjct: 305 RWAIAFKFPSIKAESKILNIELNVGRTGVITPVAVLEPINLEGSIVKRASLHNFDYIK-- 362

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     +DIR+GD V V++AG +IP++V +I  +R         P  CPIC  +V 
Sbjct: 363 ---------EKDIRIGDHVYVEKAGGIIPQIVSVIKEKRTGKELEIEIPKSCPICGGKV- 412

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
                K  +   A RC     C  +    ++ FVS+ AFNI GLG++ ++        A 
Sbjct: 413 ----GKISEEEVAIRCLNP-HCPQKLKRHMEIFVSKSAFNISGLGEKIVEKIVD----AR 463

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            I   ADIF L             I G G  S+ N+ + I K +N  L R I  LGI  V
Sbjct: 464 LINDVADIFYLTPFDLA------QISGLGQKSIANILEQIEKAKNTPLYRVIIGLGIPLV 517

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G + A+ LA  + S +  +Q            +  L  +  +G  +A+ I+E+++N +  
Sbjct: 518 GEKTAKILADKFKSIKALSQA----------SYDELTSIEGIGPEVAKNIIEYFKNEKTK 567

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             +  L           +   SS++     V TG      R + +E + +LG  V+  +S
Sbjct: 568 EIIRKLENAGVKLEQEEDTKKSSKLAGLTFVITGKFNSFTREEVKEIIEKLGGKVTNTVS 627

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            KTD ++VG+ PGSK +KA +LGVKI+NE++F  ++
Sbjct: 628 SKTDYLLVGEKPGSKYQKALELGVKIINEDEFKKMI 663


>gi|261854791|ref|YP_003262074.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
 gi|261835260|gb|ACX95027.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
          Length = 685

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/715 (35%), Positives = 376/715 (52%), Gaps = 48/715 (6%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S +  R  L +L  EI  H+  YY    P I D+ +D L R    I  A P+      
Sbjct: 11  APSEDGDRARLLALRDEIERHNFRYYVLDDPEISDAAFDRLMRELQQIESAHPEWI---T 67

Query: 71  PNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           P+ P  ++G          VTH    LSL+ ++++E+   F  RI    ++  D  + F 
Sbjct: 68  PDSPTQRVGSPTFTTRFAPVTHHQAMLSLDNVFSVEEWDAFTQRIQDRLKR--DAPLVFA 125

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI--PEIIEV 187
            EPK DG  I + Y +G+ V AA RGDG +GEDV+  +R I  IP+ L  ++   +++EV
Sbjct: 126 AEPKFDGLAINLIYRQGQLVQAATRGDGQTGEDVTLNVRTIAAIPQQLPDSLLSCDLLEV 185

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE+ +S   F ALN    A G K + NPRNAA+G LR+ +P     R L FF +G+G  
Sbjct: 186 RGEIVMSHKAFAALNAAADARGDKRFVNPRNAAAGSLRQKDPRITAKRQLQFFAYGVGAV 245

Query: 247 SEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q  +L  +  LGF V+   R+      +++Y  EM + RS L YDIDG+V+K
Sbjct: 246 DGADLPDSQLGLLDWLADLGFTVSEWRRRCEGRDEVLAYQQEMSARRSQLDYDIDGVVFK 305

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           ++  S Q  LG  A++PRW I+ KF  ++A++R+  +D Q+GRTG LTPVAR++PV +GG
Sbjct: 306 INAQSEQDALGFVAKAPRWAIAFKFPAEEATSRVHAVDFQVGRTGALTPVARIDPVFVGG 365

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++N TLHN D I             +DIR+GD V+V+RAG+VIP+VV ++   R  DA
Sbjct: 366 VTVSNITLHNIDEITR-----------KDIRIGDTVVVRRAGDVIPEVVRVLPELRPADA 414

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +  + P+ CP+C S VVR          A  RC+GGL C AQ+ E +KHF SR A NI+G
Sbjct: 415 RLVALPATCPVCGSEVVRAEGE------AIARCSGGLFCPAQRREAIKHFASRKAMNIDG 468

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ ++   + +     +    D+F L   Q  +          G+ S  NL D+++  
Sbjct: 469 LGEKWIELLLEHK----LVEHVDDLFHLTVPQVLTL------PRMGEKSAQNLVDALSAA 518

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +L RF+++LGIR VG   A  LA ++ +            A N      L  VP VG
Sbjct: 519 KQTTLPRFLYALGIREVGEVTAAGLAAHFRNLD----------ALNAATLEDLQAVPDVG 568

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
            ++AQ +  F + P N   +  L+            + ++  +  +  V TGTL  + R 
Sbjct: 569 PVVAQHVFTFLRQPHNQEVIRNLIDAGVHWPAIVATDANALPLAGRTYVLTGTLVGMSRE 628

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A E +  LGA VS  +S KT  +I G   GSKL KA  LGV +++E     LL+
Sbjct: 629 EAGERLKALGAKVSGSVSSKTTAVIAGSEAGSKLTKANDLGVPVLDETDLQKLLR 683


>gi|15604557|ref|NP_221075.1| NAD-dependent DNA ligase LigA [Rickettsia prowazekii str. Madrid E]
 gi|6225281|sp|Q9ZCK9|DNLJ_RICPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3861252|emb|CAA15151.1| DNA LIGASE (lig) [Rickettsia prowazekii]
 gi|292572364|gb|ADE30279.1| DNA ligase, NAD-dependent [Rickettsia prowazekii Rp22]
          Length = 689

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/712 (38%), Positives = 421/712 (59%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S ++A+K L  L  +I+ ++  YY    P++ DSEYD L      + + FP L  S
Sbjct: 4   IDLISEQEAKKLLKELADKIAMYNHAYYIEDNPLVSDSEYDQLFNINLKLENTFPHLVLS 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G  +     KV H  P LSL   ++ +DLR F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKVGANITNKFAKVIHQAPMLSLSNAFDEDDLRDFLERIKNFLRINEFTPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G F+  A RGDG+ GED++  I+ I   P  +  N PE +EVR
Sbjct: 120 -CEPKIDGVSFSAIYKNGLFITGATRGDGYVGEDITMNIKTIKNFPHKI-DNAPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE+YI K DFL LN E  A  R  +ANPRNAA+G +R+L+      R L +F++  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++ L F VN   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASTQEQLLTKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F++Q ++G  ARSPR+ I+HKF      T+LL I +Q+GRTG+LTPVA L+P+ IGG +
Sbjct: 298 NFAMQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPIEIGGVV 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIP++  + +++R  D   
Sbjct: 358 VSRATLHNFQDIAR-----------KDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVK 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FCP C S++ R ++          RC  GL C AQ  ER+ HFVS++A +IEGLG
Sbjct: 407 FDTPVFCPSCNSKL-RYVSE-----DIIIRCDNGLNCPAQNYERICHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q+ F          I  P DIF L+ + +T+  ++EN+ G+G  SV NL+ +I K + 
Sbjct: 461 RKQVAFLIDKR----LISNPLDIFFLKEKNETNLIRLENMDGWGKKSVANLFKNIEKSQK 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           ISL+RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +++D +  L  +  +GD 
Sbjct: 517 ISLQRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLSKNDSDIYQKLNDLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   IV+F+    N   ++ L   ++      E    + +  K +VFTG+L  I R +A+
Sbjct: 577 ILVDIVDFFYVKENTQLIKRLGSVLNIE-DYQETREQNILTGKIVVFTGSLSTISRVEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E   +LGA V+A +S  TD++I G N GSKL+KA++L +KI++E ++L  ++
Sbjct: 636 EIAEKLGAKVTASVSLNTDLVIAGVNGGSKLKKAKELNIKIIDEVEWLAFIK 687


>gi|294793797|ref|ZP_06758934.1| DNA ligase, NAD-dependent [Veillonella sp. 3_1_44]
 gi|294455367|gb|EFG23739.1| DNA ligase, NAD-dependent [Veillonella sp. 3_1_44]
          Length = 667

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/707 (32%), Positives = 371/707 (52%), Gaps = 46/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+   S   + P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVS---SSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  +++ +++R F +R+ +           + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFASRVEKELG---HKPSAYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRIGEDVTANVRTIKSIPLYL-ENAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEVGANIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +LQ +    F VN   R   T   ++   N     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLQSLETFKFSVNPHYRVCKTIDEVIDAINYWGEKRHELPYDTDGMVIKVNSFDDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETVLKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R+    PF+ P+ CP+
Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HFVSRDA NI+GLG   ++    
Sbjct: 406 CESPAVRREGE------AAVRCTNK-HCPAIEKEQIIHFVSRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +  ++      G  S  NL  +I   +   L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAIADSKTRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F       +          + V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAAGTIANVVKSMERFMTITKEEL----------VAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P ++  +E L            +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPAHVEIIEGLTAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL++   
Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLRELGE 665


>gi|15642875|ref|NP_227916.1| DNA ligase [Thermotoga maritima MSB8]
 gi|7674016|sp|Q9WXV5|DNLJ_THEMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4980590|gb|AAD35194.1|AE001696_8 DNA ligase [Thermotoga maritima MSB8]
          Length = 688

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/721 (35%), Positives = 391/721 (54%), Gaps = 54/721 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +R++        ++  +E+  L +EI YH+  YY  + P+I D EYD L RR   +  
Sbjct: 1   MSERKI-------PKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELER 53

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +P+L     P+ P  ++GG++      V HS+P LSL+  +N E++ +F  R+ +  Q+
Sbjct: 54  MYPELV---TPDSPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKALQE 110

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                + +  E KIDG  I +RYE G+FV  A RGDG  GEDVS  ++ + +IP  L   
Sbjct: 111 ---AEVEYVAELKIDGVSIALRYENGRFVLGATRGDGIEGEDVSENVKTVRSIPLRLRK- 166

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  IEVRGE+Y+  ++F  LNDE    G  P+ANPRNAA+G LR+LN      R L+ F
Sbjct: 167 -PVTIEVRGEIYMPVDEFKRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSF 225

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +        K Q+E LQ ++ LGF VN   R       ++ Y+ E K  +  L Y +
Sbjct: 226 IYYVVHPENYGLKTQWEALQFLKELGFKVNPHSRLCKNIQEVIDYWKEWKERKRELDYWV 285

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+ F  Q+ LGE +++PRW I+ KF  +QA TR+LD+ IQ+GRTG+LTPVA LE
Sbjct: 286 DGVVVKVNRFDFQRILGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELE 345

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G ++  A+LHN +YI+            +DIR+GD V V++AG +IP++V  I  
Sbjct: 346 PVQLAGTIVKRASLHNFEYIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPE 394

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R  + +    P  CP+C  +V + LNP       A RC     C A+    L+  VSR+
Sbjct: 395 LRTGNEKEIKPPDKCPVCGGKVGK-LNPDE----VAIRCLNP-HCPAKLKRALRTLVSRE 448

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG++ +D        A  I+  ADIF L               G G  ++  + 
Sbjct: 449 ALDIEGLGEKLIDRLVD----AGLIKDIADIFYLTPFDLAQLG-----PGIGQRTIAKIL 499

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
             I + +   L + I  LGI  VG + A+ LA+++ S +  A             + +L 
Sbjct: 500 QEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAIADA----------SYETLK 549

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +P +G  IA++IVE+++NP+    +E L K         +      +       TGTL+
Sbjct: 550 DIPGIGPEIAKSIVEYFRNPKTREIIEKLKKAGVK--LEEKVVKLDILRGLTFAVTGTLK 607

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +  E++ +LGA V   +SR TD +IVG+NPGSK E+A+ L VK+M+EE+FL  ++
Sbjct: 608 NFTREEIIEFLEKLGAKVVNSVSRNTDYLIVGENPGSKYERAKMLKVKMMSEEEFLEFVR 667

Query: 720 Q 720
           +
Sbjct: 668 K 668


>gi|163789388|ref|ZP_02183827.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7]
 gi|159875242|gb|EDP69307.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7]
          Length = 673

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/717 (33%), Positives = 372/717 (51%), Gaps = 53/717 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +     E A++ +  L   +  +   YY    P I D++YD L     A+   FPDL  +
Sbjct: 1   MSTQDFESAKQRVFDLRTLLDKYSYEYYVKDTPSIPDADYDKLYHELVALEEEFPDLISN 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++GG +     KV H +P LSL   +N  DL  F  RI +      D    +
Sbjct: 61  ---DSPTQRVGGTILPGFEKVVHEVPMLSLGNAFNEGDLLDFDRRIKKL----TDKPFSY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E KIDG  ++++YEKGK V AA RGDG  GE+V+  IR + ++P  L       IEVR
Sbjct: 114 ICELKIDGLAVSLKYEKGKLVRAATRGDGTVGENVTQNIRTVKSVPLRLKNAY--SIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K+ F+ LN +    G   +ANPRNAA+G LR L+  +   R LN F++ +G   
Sbjct: 172 GECYMPKDSFIKLNQDREENGEAIFANPRNAAAGGLRNLDTKETAKRNLNTFLYTVGDFG 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A  Q + L ++  LG   N   R   T   + +Y  E +  R+ LPY+IDG+V KV+
Sbjct: 232 ELTAISQEDALHQLDELGLRTNQDRRVFQTIEEVWAYTQEFQEKRTALPYEIDGIVIKVN 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           EF +QK++G   ++PRW I++KF  ++A T + DI+  +GRTG++TP A ++PV + G  
Sbjct: 292 EFDVQKEVGFTVKAPRWAIAYKFPAEEAHTVIRDIEWSVGRTGVVTPTAIMDPVQLAGTT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHNED I             RDIR+ D V+V +AG++IP+V  ++++ER  ++QP
Sbjct: 352 VQRASLHNEDLIH-----------ERDIRLLDTVVVHKAGDIIPEVTRVVLDERPEESQP 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C S ++            A RC     C AQ  E L HFVSR+A NI+GLG
Sbjct: 401 YLIPTHCPACDSELIHLEEE------VALRCMNP-KCPAQITEGLSHFVSRNAMNIDGLG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + L   F+ E     +   AD++TL   Q  +  KI+      + S  NL  +I+  R+
Sbjct: 454 IKVLLQMFEKEM----VHDVADLYTLTFNQLVTLDKIK------EKSANNLLTAIDASRS 503

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLER +F LGIRHVGA+ A+ +A+ + + +   Q     I         +         
Sbjct: 504 NSLERLLFGLGIRHVGAKAAKLIAERFETIEAVQQAEKEAIIAIEGIGEIIA-------- 555

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQ 662
              ++V ++  P     ++ L                   V S    K +V TG L    
Sbjct: 556 --DSVVAYFSLPEVTELIQELKNSQVNMTYLGKKKEEVATVDSYFNGKTIVLTGKLTHFT 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+E +  LG  V+  +S+KTD+++ G+  GSKL+KA+ L + + +E+Q L  L+
Sbjct: 614 REEAKERIENLGGNVTGSVSKKTDLVVAGEEAGSKLDKAESLNILVWDEDQLLKALE 670


>gi|221632243|ref|YP_002521464.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159]
 gi|254781441|sp|B9KXM2|DNLJ_THERP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221155911|gb|ACM05038.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159]
          Length = 695

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/721 (32%), Positives = 364/721 (50%), Gaps = 53/721 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + R  +  L + I  ++  YY  + P + D+EYDAL          +P+L     P+ 
Sbjct: 13  PPEVRARVEELRRLIQRYNYEYYVLNAPTVSDAEYDALMLELRRWEEQYPELV---TPDS 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G         V H IP LSL  +++  ++R +  R+YR   ++D   + F  EPK
Sbjct: 70  PTQRVGAPPAEGFATVQHEIPMLSLGNVFSDGEIRAWAERVYRLSGRQD---VEFVTEPK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRG 189
           +DG  +++ Y  G  V  A RGDG++GEDV+  +R I  IP  L       +P ++EVRG
Sbjct: 127 VDGLAVSLLYRDGVLVRGATRGDGYTGEDVTNNVRTIRMIPLRLYPPEGVIVPPVLEVRG 186

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY++  DF  LN E    G   +ANPRNAA+G LR+L+P+   +R L F    +G    
Sbjct: 187 EVYMNVRDFERLNRERGEQGLPLFANPRNAAAGSLRQLDPSVTASRPLRFAAWDIGLWEG 246

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                     L+ +R L  PV    R   +   +++  +  +  R  L ++ DG+V KV+
Sbjct: 247 TEPPATHLATLEFLRQLQIPVVPDYRLCRSVDEVIAECHRWQERRDALEFEADGVVIKVN 306

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +L + LG   R PR   ++KF   + +T + D+   +GRTG LTPVA LEPV IGG +
Sbjct: 307 DRALYQALGVVGREPRGATAYKFPAHEKTTIVRDVIWSVGRTGKLTPVAVLEPVEIGGVI 366

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHNE+ I+ L            + +GD V+V+R G+VIPKVV  I   R  D +P
Sbjct: 367 VERATLHNEEEIRRL-----------GLLIGDAVVVQRRGDVIPKVVATIPQRRDGDERP 415

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C +  +R              C     C A+    ++HF SR+A +IEGLG
Sbjct: 416 VDIPRQCPVCGAHTIRLEGE------VDRYCPNP-NCPARLKASVRHFASRNAMDIEGLG 468

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  D F         IR   D++      +    ++  + GFG   V NL  +I   +N
Sbjct: 469 EKISDLFVD----LGIIRSLPDLY------EIDWARVLQLEGFGPKKVENLRKAIEASKN 518

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               RF+F+LGIRHVG   A+ LA ++ S     +   + +          +++P  G  
Sbjct: 519 RPFARFLFALGIRHVGERNAQLLADHFRSIDRLMEATIDEL----------LQIPGFGPA 568

Query: 608 IAQAIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +AQ++ EF++ P+N   +E   +    ++         V   +  K +V TG L+ + R 
Sbjct: 569 VAQSVFEFFREPKNREMIERFRRLGVRMAEEEAAAVATVQGPLAGKTVVLTGRLETLTRS 628

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+E + + GA V+  +SRKTD +  G +PGSK  +AQQLGV I+ EE  L +L++    
Sbjct: 629 QAEELLRRAGAHVTDSVSRKTDYVFAGADPGSKYVRAQQLGVPILGEEDLLRMLRESGIE 688

Query: 725 L 725
           +
Sbjct: 689 V 689


>gi|227540068|ref|ZP_03970117.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240084|gb|EEI90099.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300]
          Length = 673

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/714 (30%), Positives = 373/714 (52%), Gaps = 48/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + +++++ L QE+++++  YY  ++ +I D ++D   +  +A+   +P  A   DP
Sbjct: 1   MSAVEIQEKIAQLTQELNHYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG++      V H  P LSL   ++ E+LR F  R+ +       +   +  E
Sbjct: 58  NSPTRRVGGDITSRFNTVKHRWPMLSLGNTYSQEELRDFDQRVRKIIG----DDFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            K DG  I++ Y+ GK V    RGDG  G++V+A +R I +IP  L  N  PE  E+RGE
Sbjct: 114 LKFDGLSISLTYKDGKLVQGVTRGDGTQGDEVTANVRTIRSIPLTLKTNDYPEEFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLG-KTSE 248
           +++ K+ FL LN E    G + YANPRN A+G ++  +  ++ R  L+ F++ L      
Sbjct: 174 IFMHKSAFLRLNKEREENGDQIYANPRNFAAGTIKLQDSAEVARRPLDCFLYFLYMDNRR 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E L+ +R  GF V +  R  +    + S+ N   + R  L Y+IDG+V KV++
Sbjct: 234 KHFSTHWESLEAVRKWGFHVCDHTRLCSNIDDVFSFINYWDTERHNLSYEIDGIVIKVND 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           ++ Q++LG  A++PRW  S+KF  ++  T L  I  Q+GRTG +TPVA L+PV++ G  +
Sbjct: 294 YAQQEELGFTAKNPRWATSYKFKAERVETILKSISYQVGRTGAVTPVANLQPVSLAGTTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN + I  L           D+   D V V++ GE+IPKV+   + +R PDA PF
Sbjct: 354 KRASLHNANEIVRL-----------DLHEQDTVYVEKGGEIIPKVIAANLEKRKPDALPF 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P+ CP CQ+ +VR+         A H C     C  Q + +++HF+ R   +IEG+G 
Sbjct: 403 HYPTHCPECQTLLVREEGE------AVHYCPNEDGCPPQIIGKMQHFIGRKMMDIEGMGN 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++ FFK       IR   DI++L+  +     +++ +  FG  S+ N+   I K +  
Sbjct: 457 ETIETFFKK----GLIRNVVDIYSLKEHE----EELQQMERFGQKSIDNMLKGIEKSKEK 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             E+ +F+LGIRHVG  IA+ LA Y+ +    AQ     IA           V  +G  I
Sbjct: 509 PFEKVLFALGIRHVGETIAKKLALYFKNIDALAQASVEEIA----------SVQDIGGRI 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKA 666
           A+++ ++   P +   ++ L           ++     + +E K  + +G      R + 
Sbjct: 559 AESVHQYLNTPIHQNQIQKLKDYGLQFEIEEKEVILAGNGLEGKTFLISGVFADFSREEL 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
              +   G  + + +S K + ++ GD  G SKL KA++L V I+NE++ L L+ 
Sbjct: 619 TALIESHGGKMVSSISAKLNYLVAGDKMGPSKLAKAEKLQVPIINEQELLVLIN 672


>gi|329897281|ref|ZP_08272019.1| DNA ligase [gamma proteobacterium IMCC3088]
 gi|328921277|gb|EGG28673.1| DNA ligase [gamma proteobacterium IMCC3088]
          Length = 674

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/707 (36%), Positives = 386/707 (54%), Gaps = 44/707 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
                K ++ L   I  +   YY++  P I D+EYD L R    +    P  AR    + 
Sbjct: 2   PADPAKRIAELIALIERYSQEYYEHDAPSISDAEYDQLFRELQTLEVQNPQYARR---DS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+       V H IP LSL+  ++ ++L  F  R        +  +I +  EPK
Sbjct: 59  PTQRVGGKPVEGFAPVMHVIPMLSLDNAFSNDELLDFDRRARERLGLLETATIDYVCEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVY 192
           +DG  + IRYE+G  V AA RGDG +GED++  ++ +  IP  L      + +EVRGE++
Sbjct: 119 LDGIAVAIRYERGMLVQAATRGDGQTGEDITHNVKTVKNIPLQLHGAESIDALEVRGEIF 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-F 250
           + K  F  LN    A G K +ANPRNAA+G LR+L+P     R L F+ +G+G T  +  
Sbjct: 179 MPKRGFTRLNQRAEAQGEKTFANPRNAAAGSLRQLDPAITAKRPLAFYCYGVGVTQGVDI 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QY +L+    LG PVN+ V+  +     + YY ++   RS L YDIDG+VYKV+  +
Sbjct: 239 PDSQYGLLRWYESLGLPVNDEVQAVSGIQACIDYYEQLSRRRSGLDYDIDGIVYKVNSLA 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG  +R+PRW I+ KF  ++A T LLD++ Q+GRTG +TPVARLEPV++GG +++N
Sbjct: 299 EQADLGFVSRAPRWAIARKFPAEEALTHLLDVEFQVGRTGAITPVARLEPVSVGGVVVSN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +++GD V+V+RAG+VIP+V   +  ER  + +   F
Sbjct: 359 ATLHNADEIDRLQ-----------VKIGDLVVVRRAGDVIPQVARALPEERRGELRKIVF 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S +VR+         A  RC+G L CSAQ+   + HFVSR A +IEG G++ 
Sbjct: 408 PSHCPVCGSAIVREEGE------AVQRCSGALTCSAQRKGAIIHFVSRKAMDIEGFGEKL 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     ++ P+DI+ L   +  +          G  S  NL D+I++ +  + 
Sbjct: 462 VEQLVDIER----LKDPSDIYGLTFNELAAL------PRMGAKSAQNLIDAIDRSKRTTF 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+        +I ++IA + DD L+   VP VG I+A 
Sbjct: 512 ARFLYALGIREVGVTTAERLADYFG-------DIESLIAASVDDLLA---VPDVGPIVAN 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEY 669
            I  F  +  ++  +  L++           +V +  +  +  V TG L+   R +A E 
Sbjct: 562 HIRSFLNSSTHLEVISTLVQAGLSWPEVAPIDVDNAPLVGQTWVVTGKLETFSREEATEL 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +  LGA V+  +S KT +++ G   GSKL KAQ LGV+++NE++FL 
Sbjct: 622 LKSLGASVAGSVSNKTTVLLAGPGAGSKLAKAQALGVEVINEDEFLA 668


>gi|164686703|ref|ZP_02210731.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM
           16795]
 gi|164604093|gb|EDQ97558.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM
           16795]
          Length = 674

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/706 (33%), Positives = 376/706 (53%), Gaps = 50/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A+K +  L   I+YH++ YY    P I D EYD L +    +    P+L R+   + P N
Sbjct: 3   AQKRIEELINLINYHNEKYYNQDSPEIEDFEYDNLMKELIKLEEENPELKRN---DSPSN 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+      +V H IP LSL   ++ EDL+ F +R+         + + + +E KIDG
Sbjct: 60  RVGGKPLDKFEQVVHKIPMLSLSNAYSWEDLKDFDSRVREAVG----SDVEYVVEFKIDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G F   A RG+G  GE+++  +  I  IP  L+++    + VRGEVYISK 
Sbjct: 116 LSVGLNYNNGIFESGATRGNGIVGENITKNLMTIKNIP--LNIDEKGELTVRGEVYISKK 173

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           DF  +N       +  YANPRN A+G LR+L+      R L+ F+  L   +    K   
Sbjct: 174 DFEEINKIQEEQDQPLYANPRNLAAGSLRQLDSKLTAKRPLDIFIFNLEDINSKQFKTHS 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ ++ LGF V+   +   T   I+ Y       R  L + IDG+V KV+  + ++Q+
Sbjct: 234 ESLEYLKQLGFHVSPEFKVFKTMDEIIEYIKYWTEHREDLGFGIDGMVIKVNNLAQREQM 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  T+LLDI +++GRTG +TP A LEP+ + G  ++ ATLHN
Sbjct: 294 GYTAKSPRWAIAYKFPAERKETKLLDIVVEVGRTGTITPTAVLEPIRLAGTTVSRATLHN 353

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI             +DI++ D VLV++AG++IP+VV++I  +R  +   F  P  CP
Sbjct: 354 EDYIN-----------EKDIKINDTVLVQKAGDIIPQVVEVIKEKRTGEEIEFKMPEECP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    VR          AA +C   ++C AQ    + HF SR+A +I+GLG+  +    
Sbjct: 403 VCGEPTVRLEGE------AAVKCIN-ISCPAQIRRGIIHFASREAMDIDGLGESIITLLL 455

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K +     I+  +D++ L++ Q +   ++      GD S TNL ++INK +   L RFI 
Sbjct: 456 KQD----LIKDISDLYYLKKEQISVLERM------GDKSATNLINAINKSKENDLWRFIN 505

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI+ +G + A+ LA  +                       LI +   G  +A ++VEF
Sbjct: 506 GLGIKLIGTKAAKILASEFKDLDKLMSATE----------QELINLEEFGQTMADSVVEF 555

Query: 616 YQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++  +NI  +E L +    +  I   ++++    E  K+V TGTL  ++R+ A+E + + 
Sbjct: 556 FKEEKNISVIEKLKEAGVNTKLIESDDEDIPKIFEKMKIVLTGTLPTLKRNDAKEMIEKR 615

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL L+ 
Sbjct: 616 GGKATSSVSKSTSFVLAGEEAGSKLTKANDLGIKVIDEEKFLQLID 661


>gi|126661836|ref|ZP_01732835.1| DNA ligase [Flavobacteria bacterium BAL38]
 gi|126625215|gb|EAZ95904.1| DNA ligase [Flavobacteria bacterium BAL38]
          Length = 663

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/702 (33%), Positives = 373/702 (53%), Gaps = 49/702 (6%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           + +L +E++ H+  YY    PII D E+D   ++   +    PD     D N P  ++GG
Sbjct: 7   IKNLREELNQHNYNYYVLDNPIISDFEFDQKLKQLQDLEIQNPDFF---DENSPTQRVGG 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +  +   + H     SL+  ++IEDL+ + TRI +      D  + +T E K DG  I+
Sbjct: 64  MVTKNFETIKHEYRMYSLDNSYSIEDLQDWETRIQKVLG---DVPLEYTCELKYDGASIS 120

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           I YE G+ V A  RGDG  G+DV+  I+ I  +P  L  + PE  ++RGE+ +    F  
Sbjct: 121 ISYENGRLVRAVTRGDGVQGDDVTNNIKTIKAVPIHLKGDFPEKFDIRGEIILPFAGFEK 180

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N E+I +G  PY+NPRN ASG L+  +  ++  R L+  ++ +   + +  K Q+E LQ
Sbjct: 181 MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYFVI-GNNLPFKTQFEGLQ 239

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           K R  GF V N  + A   + +  + N     R  LPY+ DG+V KV+    Q++LG  A
Sbjct: 240 KARDWGFKVPNQSKLAKNLNEVFEFINYWDKHRHDLPYETDGVVIKVNNIQHQEELGYTA 299

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           +SPRW +++KF  +Q +T+L  I  Q+GRTG +TPVA LEPV + G ++  A+LHN D I
Sbjct: 300 KSPRWAMAYKFKAEQVTTQLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQI 359

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           + L           DIR+GD V V++ GE+IPK++ +   +R   A+P  + + CP CQ+
Sbjct: 360 EKL-----------DIRIGDDVFVEKGGEIIPKIIAV--AKRGNQAEPTKYITHCPECQT 406

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +VR          A H C     C  Q + R++HF++R A +I+GLG + +   F    
Sbjct: 407 ELVRSEGE------ANHFCPNFYGCPPQIIGRIQHFITRKAMDIDGLGGETVALLFN--- 457

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
            A  +   AD++ L++ Q     ++       + S  NL + I K + I  ER +++LGI
Sbjct: 458 -AGLVTNYADLYELKKEQIVPLERMA------EKSAENLINGIEKSKTIPFERVLYALGI 510

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           R+VG  +A+ LAK+Y S            A  N   + LI V  +GD IAQ++++F+ N 
Sbjct: 511 RYVGETVAKKLAKHYKSID----------AIANASVMDLILVDEIGDKIAQSVMQFFDNQ 560

Query: 620 RNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            NI  ++      V       +  VS +++ K  V +G  +   R + ++ +   G  V 
Sbjct: 561 ENIRIIDKLKSFGVQLESDVEDVLVSEKLKGKTFVVSGVFEIYSRDELKKSIEDNGGKVG 620

Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +S KTD +I GDN G SKLEKA QL + I++E  F  ++ 
Sbjct: 621 SSISSKTDFVIAGDNMGPSKLEKANQLKIAIISEIDFKQMID 662


>gi|206890248|ref|YP_002249789.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|254781443|sp|B5YIF8|DNLJ_THEYD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206742186|gb|ACI21243.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 670

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/711 (33%), Positives = 389/711 (54%), Gaps = 50/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  +KE+  L +E++YH+  YY    P+I D EYD + RR   +   +  +     P+ 
Sbjct: 5   PEDIKKEIEKLVKELNYHNYRYYVLDSPVISDEEYDMMLRRLKELEEKWGYIL----PDS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G   +    K  H  P LSL+  ++IE+LR F  R+ R     +   + +T+EPK
Sbjct: 61  PTQRVGAAPSEKFEKAEHREPMLSLDNAFSIEELRDFDARVKRLLGSSE--EVEYTVEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEV 191
            DG  + + Y+ G    A+ RGDG+ GED++  I+ I  IP  +     IPE I++RGEV
Sbjct: 119 YDGLAVELSYKDGLLYKASTRGDGYVGEDITQNIKTIKAIPLRIEGVDKIPEEIDIRGEV 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y++ ++F  +N E I  G   +ANPRNAASG +R+L+P+   +R L    +G+G    I 
Sbjct: 179 YLNIDEFERINKERIEKGEPVFANPRNAASGSVRQLDPSITASRRLYMSCYGIGYVKGIE 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E ++ ++   FPV   V+ A     ++    E++ +R   P++ DG V KV+ F 
Sbjct: 239 FKSQIEFIEWLKKGRFPVPAYVKLAKGIEEVIEAIKEIEKLRQGYPFETDGAVVKVNSFE 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG + R PRW I++K+   Q  T+L DI   +GRTG++TPVA LEPV IGG  ++ 
Sbjct: 299 LQRKLGTKTREPRWAIAYKYPAHQGITKLKDILASVGRTGVITPVAVLEPVKIGGVTVSR 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           +TLHN D ++            +DIRVGD V+V+RAGEVIP ++ ++ + R  + +    
Sbjct: 359 STLHNWDEVER-----------KDIRVGDYVIVERAGEVIPHIIGVVKDRRTGEEKEVKI 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S+ VR+          A +C     C AQ  ER+KHF SR A NIEGLG + 
Sbjct: 408 PEHCPVCGSKTVREPGE------VAVKCIN-FNCPAQVEERIKHFASRRAMNIEGLGDKT 460

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           I+   D++ L++        I+ + GF ++S   L ++I K +  +L
Sbjct: 461 VELLHNK----GIIKHFVDLYKLRQ------EDIKGLPGFAELSSKKLIEAIAKSKKTTL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +++LGI  VG   ++ LA+++   ++        +          +++P +G+  A+
Sbjct: 511 SRLLYALGISQVGEYASKLLAQHFRKLEDLYHIKAEKL----------VQIPQIGEKTAK 560

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            I +F+ N  N+ A+E L +      +    E+   S ++    V TGTL K  R + +E
Sbjct: 561 TIEQFFNNEENLKAIEELKRMGLKVENPEFEEEKKPSPLKGLTFVITGTLPKP-REEVKE 619

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G  VS+ +S+ TD ++VG++PGSKL KAQ L VK ++ E+FL +L+
Sbjct: 620 MIEKAGGKVSSSVSKNTDYLLVGEDPGSKLAKAQALRVKTLSYEEFLKMLE 670


>gi|118594798|ref|ZP_01552145.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
 gi|118440576|gb|EAV47203.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
          Length = 671

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/709 (35%), Positives = 395/709 (55%), Gaps = 48/709 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ L  L++ IS H+  YY    P+I D+E+D +     AI    P+L      + P  
Sbjct: 7   IKERLVDLKKLISEHNYHYYVLDNPLISDAEFDKIFLEIKAIEDLNPELITI---DSPTQ 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE N S  ++TH  P LSL   ++ +DL  F  RI          +I +  EPK DG
Sbjct: 64  RVGGEPNKSFKQITHQRPMLSLGNAFDEKDLDVFDKRIREELG---VANISYVAEPKFDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVYISK 195
             +TI Y  G+   AA RGDG  GEDV+  I+ I +IP  L  N P   IE+RGEV + K
Sbjct: 121 LAVTIVYVDGELHLAATRGDGSVGEDVTHNIKTIKSIPLKLPSNSPAGQIEIRGEVIMLK 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
           NDF+ LN   +    K +ANPRNAA+G LR+L+PT    R L+F+ + +          Q
Sbjct: 181 NDFIGLNKRQLEANEKVFANPRNAAAGSLRQLDPTIAASRPLSFYAYSI-FCDNKTLASQ 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  ++ L  P +N  ++ +   G++ +YN + + R +LP+DIDG+VYKV+  ++Q +
Sbjct: 240 EEGLDLLKQLLIPTSNLTKRVDGVRGMIDFYNAINNARKSLPFDIDGVVYKVNSLNMQDE 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I+HKFA ++A T + DI++Q+GRTG +TPVARL PV + G  +TNATLH
Sbjct: 300 LGFVSRAPRWAIAHKFAAEEAMTTIKDINVQVGRTGSITPVARLMPVVVAGVTVTNATLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +DI +GD V+V+RAG+V+P+V+ ++  +R  D + F  P+ C
Sbjct: 360 NEDELRR-----------KDIHIGDFVMVRRAGDVVPEVIKVVHEKRPNDIKKFEMPTLC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +VR+         +  RC  G+ C AQ+ + + HF SR A +I+GLG++ +D  
Sbjct: 409 PECSNVLVREEGE------SVLRCNAGMLCPAQRKQSIMHFASRKAMDIDGLGEKIIDQL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +S      +   +D++T++      T K+  +  F   S  NL +SI K +  +L +FI
Sbjct: 463 IESS----LVLSVSDLYTVK------TEKLLKLDRFAKKSAENLIESIEKSKKTTLGKFI 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR+VG   A  LAK + S                    SL+ +  +G  +A +I  
Sbjct: 513 YALGIRNVGEATAYDLAKQFGSIDKIMSASKE----------SLLSIHDIGPTVATSIQN 562

Query: 615 FYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++    N   V  LLKE     SI    + +S+E+E    V TGTL  ++R +A+  +  
Sbjct: 563 YFNEDTNREQVAILLKEGIQWDSIEVGAEEISNELEGLVFVLTGTLTSLKRDEAKNLILS 622

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            G  VS  +S+KTD +I G + GSKL+KA  LGVK++ E++ + L ++ 
Sbjct: 623 CGGKVSGSVSKKTDYVIAGLDAGSKLDKASALGVKVIGEDELIQLTKKG 671


>gi|300771799|ref|ZP_07081670.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761185|gb|EFK58010.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 673

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/714 (30%), Positives = 373/714 (52%), Gaps = 48/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + +++++ L QE+++++  YY  ++ +I D ++D   +  +A+   +P  A   DP
Sbjct: 1   MSAVEIQEKIAQLTQELNHYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG++      V H  P LSL   ++ ++LR F  RI +       +   +  E
Sbjct: 58  NSPTRRVGGDITSRFNTVKHRWPMLSLGNTYSQDELRDFDQRIRKIIG----DDFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190
            K DG  I++ Y+ GK V    RGDG  G++V+A +R I +IP  L   + PE  E+RGE
Sbjct: 114 LKFDGLSISLTYKDGKLVQGVTRGDGTQGDEVTANVRTIRSIPLTLKTKDYPEEFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLG-KTSE 248
           +++ K+ FL LN E    G + YANPRN A+G ++  +  ++ R  L+ F++ L      
Sbjct: 174 IFMHKSAFLRLNKEREENGDQIYANPRNFAAGTIKLQDSAEVARRPLDCFLYFLYMDNRR 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E L+ +R  GF V +  R  +    + S+ N   + R  L Y+IDG+V KV++
Sbjct: 234 KHFSTHWESLEAVRKWGFHVCDHTRLCSNIDDVFSFINYWDTERHNLSYEIDGIVIKVND 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           ++ Q++LG  A++PRW  S+KF  ++  T L  I  Q+GRTG +TPVA L+PV++ G  +
Sbjct: 294 YAQQEELGFTAKNPRWATSYKFKAERVETILKSISYQVGRTGAVTPVANLQPVSLAGTTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN + I  L           D+   D V V++ GE+IPKV+   + +R PDA PF
Sbjct: 354 KRASLHNANEIARL-----------DLHEQDTVYVEKGGEIIPKVIAANLEKRKPDAIPF 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P+ CP CQ+ +VR+         A H C     C  Q + +++HF+ R   +IEG+G 
Sbjct: 403 HYPTHCPECQTLLVREEGE------AVHYCPNEDGCPPQIIGKMQHFIGRKMMDIEGMGN 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++ FFK       IR   DI++L+  +      ++ +  FG  S+ N+   I K +  
Sbjct: 457 ETIETFFKK----GLIRNVVDIYSLKEHE----EDLQKLERFGQKSIDNMLRGIEKSKEK 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             E+ +F+LGIRHVG  IA+ LA Y+ +    AQ     IA           V  +G  I
Sbjct: 509 PFEKVLFALGIRHVGETIAKKLALYFKNIDALAQASVEEIA----------SVQDIGGRI 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKA 666
           A+++ ++   P +   ++ L           ++ V   + +E K  + +G      R + 
Sbjct: 559 AESVHQYLNTPIHQQQIQKLKDYGLQFEIEEKEVVLAGNGLEGKTFLISGVFADFSREEL 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
              +   G  + + +S K + ++ GD  G SKL KA++L V I+NE++ L L+ 
Sbjct: 619 TALIESHGGKMVSSISAKLNYLVAGDKMGPSKLAKAEKLQVPIINEQELLVLIN 672


>gi|262373317|ref|ZP_06066596.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
 gi|262313342|gb|EEY94427.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
          Length = 677

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/716 (35%), Positives = 382/716 (53%), Gaps = 47/716 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +      +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +++  
Sbjct: 1   MEQNSVIEQMRQLIQLIAKHNHAYYVMDQPTITDSEYDHLFHQLKALEQQYPEFMQADT- 59

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P NK+GG+       VTH++P LSL  ++N +DL  F  RI        +  + + +E
Sbjct: 60  --PTNKVGGQALSKFESVTHAVPMLSLGNVFNQDDLFAFARRIDERLP---NQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVR 188
            K+DG  I++ YE G  +    RGDG +GED++  ++ I  +P++LS     IP+++EVR
Sbjct: 115 LKLDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKILSSQHQAIPQLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K  ANPRNAA+G LR+L+P     R L F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTLANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCE 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ L  +   GF +        +   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PHHGLTTMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQLERPNLKVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T++ +ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLAPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVERVWAEFRPADAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 LVYLPTNCPVCDSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           +R  ADI+ L   +     K+ +I   G+ SV NL D+I+  +
Sbjct: 458 GDRWVESLL----HLDLLRDVADIYHLHEHR----EKLLSIEKMGEKSVQNLIDAIDASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + ++        + +             P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTFDALKAANIDALKKT----------PDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ IV+F+Q   N+  +E L                  +  +  V TGTL+ + R +A
Sbjct: 560 ITAEWIVDFFQAEHNLEVLERL-LAAGIHWDAPTAPTRQPLNGESWVVTGTLESMGRDEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            + +  LGA VS  +S KT  ++ G+  GSKL+KAQ+L +++MNE++FL  L QY 
Sbjct: 619 TQRLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAQKLDIRVMNEQEFLDFLAQYG 674


>gi|281412160|ref|YP_003346239.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10]
 gi|281373263|gb|ADA66825.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10]
          Length = 688

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/721 (35%), Positives = 387/721 (53%), Gaps = 54/721 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +R++        ++  +E+  L +EI YH+  YY  + P+I D EYD L RR   +  
Sbjct: 1   MSERKI-------PKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELER 53

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +P+L     P+ P  ++GG++      V HS+P LSL+  +N E++ +F  R+ +  Q+
Sbjct: 54  MYPELV---TPDSPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKTLQE 110

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                + +  E KIDG  I +RYE GKFV  A RGDG  GEDVS  ++ + +IP  L   
Sbjct: 111 ---AEVEYVAELKIDGVSIALRYENGKFVLGATRGDGIEGEDVSENVKTVRSIPLRLRK- 166

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
               +EVRGE+Y+  ++F  LNDE    G  P+ANPRNAA+G LR+LN      R L+ F
Sbjct: 167 -LVTVEVRGEIYMPVDEFKRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSF 225

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +        K Q+E LQ ++ LGF VN   +       ++ Y+ E K  +  L Y +
Sbjct: 226 IYYVVHPENYGLKTQWEALQFLKELGFKVNPHSKLCKNIQEVIDYWREWKERKKELDYWV 285

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+ F  Q+ LGE +++PRW I+ KF  +QA TR+LD+ IQ+GRTG+LTPVA LE
Sbjct: 286 DGVVVKVNRFDFQRILGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELE 345

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G ++  A+LHN +YI+            +DIR+GD V V++AG +IP++V  I  
Sbjct: 346 PVQLAGTIVKRASLHNFEYIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPE 394

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    +    P  CP+C  +V +    +      A RC     C A+    L+  VSR+
Sbjct: 395 LRTGSEKEIKPPDKCPVCGGKVGKLDPEE-----VALRCLNP-HCPAKLKRALRTLVSRE 448

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG++ +D        A  ++  ADIF L               G G  ++  + 
Sbjct: 449 ALDIEGLGEKLIDRLVD----AGLVKDIADIFYLTPFDLAQLG-----PGIGQRTIAKIL 499

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
             I + +   L + I  LGI  VG + A+ LA+++ S +  A             + +L 
Sbjct: 500 QEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAIADA----------SYETLK 549

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +P +G  IA++IVE+++NP+    +E L K       R  K     ++      TGTL+
Sbjct: 550 DIPGIGPEIAKSIVEYFRNPKTREIIEKLKKAGVKLEERVMKL--DILKGLTFAVTGTLK 607

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +  E+  +LGA V   +SR TD +IVG+NPGSK EKA+ L VK M+EE+FL  ++
Sbjct: 608 NFTREEIVEFFEKLGAKVVNSVSRNTDYLIVGENPGSKYEKAKMLKVKTMSEEEFLEFVR 667

Query: 720 Q 720
           +
Sbjct: 668 K 668


>gi|87199755|ref|YP_497012.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM
           12444]
 gi|123763512|sp|Q2G7J5|DNLJ_NOVAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|87135436|gb|ABD26178.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM
           12444]
          Length = 721

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/748 (38%), Positives = 420/748 (56%), Gaps = 67/748 (8%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           AL+  +A  EL  L ++I+ H+  Y+    P I D+EYDAL RR   +  AFP L R   
Sbjct: 5   ALTEAEAANELMRLARQIAKHNRLYHAEDSPEITDAEYDALVRRNAELEAAFPHLIR--- 61

Query: 71  PNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           P+ P  +IG E+  S L KV H +  +SL+  +  E++ +F+ R+ RF    +D  +  T
Sbjct: 62  PDSPSAQIGHEIAASPLGKVQHEVRMMSLDNAFTDEEVEEFVARVRRFLALPEDAEVVMT 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEII 185
            E KIDG   ++RYE G+ V AA RGDG  GEDV+A +  IP IP+ L      +IP + 
Sbjct: 122 AEDKIDGLSCSLRYENGRLVRAATRGDGQVGEDVTANVAHIPDIPQELKAAGLFDIPAVF 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           E+RGEVY++K+DFLALN      G K +ANPRN A+G LR+ + +   +R L F  HG G
Sbjct: 182 EIRGEVYMAKDDFLALNARQAEAGEKIFANPRNGAAGSLRQKDASVTASRPLRFLAHGWG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             SE+ A  Q+EM++K+   G PV+  + + ++   +V++Y ++   R++LPYDIDG+VY
Sbjct: 242 AASEVPAATQFEMMRKIADWGVPVSPLLVRCSSAAEMVAHYRDIGEKRASLPYDIDGVVY 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q +LG  A++PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL+PV +G
Sbjct: 302 KVDRLDWQDRLGFVAKAPRWGIAHKFPAERAETTLDAIDIQVGRTGKLTPVGRLKPVLVG 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TN TLHN D I  L            +RVGDR++++RAG+VIP+VV+ +  E   D
Sbjct: 362 GVTVTNVTLHNRDEIGRL-----------GLRVGDRIVLQRAGDVIPQVVENLTREEPRD 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             P+ FP  CP C S  V +            RCTGGL C AQ++ERLKHFVSR A +IE
Sbjct: 411 --PYHFPDHCPECGSEAVAEEGE------VDVRCTGGLICPAQRVERLKHFVSRAALDIE 462

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +  FF+       +  PADIF L++R+     +     G+ D SV NL  +I  
Sbjct: 463 GLGEKTIIEFFQ----LGWLESPADIFRLRKRRSEIVGR----EGWKDKSVDNLLAAIEA 514

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ---------------------- 582
           +R     R +F LGIRHVGA  AR L K +++     +                      
Sbjct: 515 KRQPDAARLLFGLGIRHVGAVTARDLMKRFVTLPALREAARQASSAAREGEPANADGAYD 574

Query: 583 --------EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
                   +     A  +D    L+ +  VG ++ +A+ +F+  P NI   E LL EVSP
Sbjct: 575 PATVTPDSDTAGAEAGRSDALADLLSIDGVGPVVVEALGDFFHEPHNIAVWEDLLSEVSP 634

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                E    S +  K +VFTG L+ + R +A+     LGA  +  +S KTD+++ G   
Sbjct: 635 PPYVVETK-DSAVAGKTIVFTGKLETMSRDEAKAQAEALGARTAGSVSAKTDLVVAGPGA 693

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           GSKL++A  LG+ +++E  +  +++Q  
Sbjct: 694 GSKLKQAAALGIDVIDEAAWAEIVRQAG 721


>gi|51473890|ref|YP_067647.1| NAD-dependent DNA ligase LigA [Rickettsia typhi str. Wilmington]
 gi|81389976|sp|Q68W27|DNLJ_RICTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51460202|gb|AAU04165.1| DNA joinase [Rickettsia typhi str. Wilmington]
          Length = 693

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/712 (38%), Positives = 426/712 (59%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S ++A+K L  L  +I+ ++  YY    P++ DSEYD L      + + FP L  S
Sbjct: 4   IDLISEKEAKKLLEELADKIAMYNHAYYIEDNPLVSDSEYDQLFNLNLKLENTFPHLVLS 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  KIG ++     KV H  P LSL   ++ ED+R F+ RI  F +  +   IF 
Sbjct: 64  ---NSPSKKIGAKITNKFAKVIHQAPMLSLSNAFDEEDIRDFLERIKNFLRINEFTPIF- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G F+  A RGDG+ GED++  I+ I   P  +  N PE +EVR
Sbjct: 120 -CEPKIDGLSFSAIYKHGLFITGATRGDGYVGEDITINIKTIKNFPHKI-DNAPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE+YI K DF+ LN E  A  R  +ANPRNAA+G +R+L+      R L +F++  G T 
Sbjct: 178 GEIYIEKQDFVNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++ L F VN   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 KNLASTQEQLLAKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F++Q ++G  ARSPR+ I+HKF      T+LL I +Q+GRTG+LTPVA L+P+ IGG +
Sbjct: 298 NFAMQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPLEIGGVV 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIP++  + +++R  D   
Sbjct: 358 VSRATLHNFQDIAR-----------KDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVK 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FCP C S++ R ++          RC  GL C AQ  ER+ HFVS++A +I GLG
Sbjct: 407 FDTPVFCPSCNSKL-RYVSE-----DIIIRCDNGLNCPAQNYERICHFVSKNAMDIAGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q+ F          I  P DIF L+++ +T+  ++EN+ G+G  SV NL+ +I K + 
Sbjct: 461 RKQVAFLIDKR----LISNPLDIFFLKKKNETNLIRLENMDGWGKKSVANLWQNIEKSQK 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           ISL+RFI++LGIRH+G + A+ LA+ ++SY NF  ++  +  +++D +  L  +  +GD 
Sbjct: 517 ISLQRFIYALGIRHIGEQNAKLLAREFVSYNNFIAQMELLSKNDSDVYQKLNDLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +   I++F+    NI  ++ L   ++      E    + +  K LVFTG+L+ I R +A+
Sbjct: 577 MLVDIIDFFYVKENIQLIKKLGAVLNIE-DYKETREQNILTGKILVFTGSLKTISRVEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E   +LGA V++ +S  TD++IVG N GSKL+KA++L +KI++E ++L  ++
Sbjct: 636 EIAEKLGAKVASSVSSNTDLLIVGVNGGSKLKKAKELNIKIIDEAEWLAFIK 687


>gi|15606063|ref|NP_213440.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5]
 gi|7673992|sp|O66880|DNLJ_AQUAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2983242|gb|AAC06838.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5]
          Length = 720

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/725 (34%), Positives = 395/725 (54%), Gaps = 51/725 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R++  ++ LS E+A+K    L + I YHD  YY  + P+I D +YD L R    I   +P
Sbjct: 19  RKIKDVKVLSFEEAKKLAEDLREVIRYHDYKYYVEANPVIPDYDYDRLFRALKEIEKKYP 78

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +L     P+ P  ++  E++     V H  P LSL+  ++ ++LR+F  R+ +       
Sbjct: 79  ELI---TPDSPTQRVASEISGEFPTVKHYTPMLSLDNAYSEDELREFDRRVRQITGL--- 132

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
             + + +EPK+DG  I + YE   FV  A RGDG  GED++  ++ I TIP     +   
Sbjct: 133 EVVEYAVEPKLDGAGIALVYENDLFVRGATRGDGEYGEDITNNLKTIKTIPLKAEFSRFG 192

Query: 184 I--IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240
           I   E+RGEV I K++F  LN E +  G  P+ANPRNAA+G +R+ +P ++  R L   V
Sbjct: 193 IKLAEIRGEVVIRKDEFQKLNKERMEEGLPPFANPRNAAAGSIRQKDPKEVAKRNLEAIV 252

Query: 241 H--GLGKTSEIFAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           +     +  E      YE L+ +  LGF       +       ++ Y  E +  R + PY
Sbjct: 253 YHLSYVEPPETEPPTHYESLKMLHTLGFKTLFKDTKVCKGIDEVIEYCKEWEKKRDSYPY 312

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KV++  L K LG  +  PRW I++KF  ++A T+L+D+  Q+GRTG +TPV +
Sbjct: 313 EIDGMVVKVNDRRLWKVLGYTSHHPRWAIAYKFKPRRAVTKLVDVVFQVGRTGTITPVGK 372

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV +GG  +++ +L NED+I+            +DIR+GD V+V+RAG+VIP VV+++
Sbjct: 373 LEPVELGGVTVSSVSLFNEDFIR-----------EKDIRIGDWVVVERAGDVIPYVVEVL 421

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
             +R  + +P  FP +CP C S +V+           A RC   ++C AQ + R+KH+ S
Sbjct: 422 KEKRTGEEKPVEFPKYCPSCGSELVKLPEE------VAIRCIN-ISCPAQSVLRIKHWAS 474

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           RDA +I GLG   +   F         +   D++ L+       T I  + GFG+ S  N
Sbjct: 475 RDAMDIRGLGDATIKLLFNR----GLAKDVGDLYYLK------LTDILKLPGFGEKSAMN 524

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +I + +N  L+R ++ LGIR+VG   A+ +A+           IN++    +     
Sbjct: 525 LLKAIEESKNRPLDRVLYGLGIRYVGQTTAKKIAEI----------INSVWDLKDIPLEK 574

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           L+R+  +G  +A++I EF+  P+N+  ++ L K       + ++ V+  ++ K  VFTGT
Sbjct: 575 LMRLEGIGYKVARSIKEFFNIPQNLEVLKKLEKAGVNLAKKVKEKVADVLKGKTFVFTGT 634

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           L    R KA E V  LG   S  ++ KTD ++VG +PG +KL KA++ GVK + EE+F+ 
Sbjct: 635 LDCCSREKAGEIVEMLGGKFSNSVTSKTDYLVVGKDPGATKLSKAKKYGVKTITEEEFVN 694

Query: 717 LLQQY 721
           +++ Y
Sbjct: 695 MIKDY 699


>gi|296046593|gb|ADG86438.1| NAD-dependent DNA ligase [synthetic construct]
          Length = 689

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/712 (34%), Positives = 392/712 (55%), Gaps = 61/712 (8%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
             YY   +P + D+EYD L      +    P+L      + P  K+GG+   S  +VTH 
Sbjct: 20  HEYYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTI---DSPSQKVGGQALKSFTQVTHQ 76

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
           +P LSL+ +++++D   F+ R+       D+ +I F  EPK+DG  +++RYE G+ + AA
Sbjct: 77  LPMLSLDNVFSLDDFHAFVKRVKDRLN--DNQAIVFCAEPKLDGLAVSLRYEHGQLIQAA 134

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
            RGDG  GE+++  IR I +IP  L      + P+I+EVRGEV++ K  F ALN      
Sbjct: 135 TRGDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTLAKKR 194

Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--------------TSEIFAKG 253
           G K +ANPRNAA+G LR+L+      R L F+ + LG               T++ FA  
Sbjct: 195 GEKGFANPRNAAAGSLRQLDSKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANS 254

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E L +++ LG P+   VR   +     ++Y ++ + RS L Y+IDG V KVDE SLQK
Sbjct: 255 HHERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQK 314

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NATL
Sbjct: 315 RLGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATL 374

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D I  L            ++V D V+++RAG+VIP++V +++++R  +A    FP+ 
Sbjct: 375 HNQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTS 423

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V +          A  RCT GL C+AQ+ E +KHF SR A +++GLG + ++ 
Sbjct: 424 CPVCDSAVAKPEGE------AVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQ 477

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               +     I  PAD+F L   Q      +  I   G  S TNL + + + ++ +L +F
Sbjct: 478 LVDEK----LINTPADLFKLTEIQ------VSTIDRMGKKSATNLINGLEQAKSTTLAKF 527

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIR VG   A +LA ++ +          + A  +     L  V  VG+++A+ I+
Sbjct: 528 IYGLGIREVGEATAANLANHFYT----------LAAIESASLEDLQNVSDVGEVVAKNII 577

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F++   N+  V  L + +       +      +  +  V TGTL ++ R +A+  +  L
Sbjct: 578 NFFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQIFVLTGTLTQMGRTEAKTALQSL 637

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GA VS  +S+ T  ++ GD  GSKL KAQ LG+ ++ E+  + LL ++  T+
Sbjct: 638 GAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689


>gi|71281008|ref|YP_270140.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H]
 gi|123774873|sp|Q47YI0|DNLJ_COLP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71146748|gb|AAZ27221.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H]
          Length = 689

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/712 (34%), Positives = 392/712 (55%), Gaps = 61/712 (8%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
             YY   +P + D+EYD L      +    P+L      + P  K+GG+   S  +VTH 
Sbjct: 20  HEYYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTI---DSPSQKVGGQALKSFTQVTHQ 76

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
           +P LSL+ +++++D   F+ R+       D+ +I F  EPK+DG  +++RYE G+ + AA
Sbjct: 77  LPMLSLDNVFSLDDFHAFVKRVKDRLN--DNQAIVFCAEPKLDGLAVSLRYEHGQLIQAA 134

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
            RGDG  GE+++  IR I +IP  L      + P+I+EVRGEV++ K  F ALN      
Sbjct: 135 TRGDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTLAKKR 194

Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--------------TSEIFAKG 253
           G K +ANPRNAA+G LR+L+      R L F+ + LG               T++ FA  
Sbjct: 195 GEKGFANPRNAAAGSLRQLDSKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANS 254

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E L +++ LG P+   VR   +     ++Y ++ + RS L Y+IDG V KVDE SLQK
Sbjct: 255 HHERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQK 314

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NATL
Sbjct: 315 RLGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATL 374

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D I  L            ++V D V+++RAG+VIP++V +++++R  +A    FP+ 
Sbjct: 375 HNQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTS 423

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V +          A  RCT GL C+AQ+ E +KHF SR A +++GLG + ++ 
Sbjct: 424 CPVCDSAVAKPEGE------AVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQ 477

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               +     I  PAD+F L   Q      +  I   G  S TNL + + + ++ +L +F
Sbjct: 478 LVDEK----LINTPADLFKLTEIQ------VSTIDRMGKKSATNLINGLEQAKSTTLAKF 527

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIR VG   A +LA ++ +          + A  +     L  V  VG+++A+ I+
Sbjct: 528 IYGLGIREVGEATAANLANHFYT----------LAAIESASLEDLQNVSDVGEVVAKNII 577

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F++   N+  V  L + +       +      +  +  V TGTL ++ R +A+  +  L
Sbjct: 578 NFFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQIFVLTGTLTQMGRTEAKTALQSL 637

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GA VS  +S+ T  ++ GD  GSKL KAQ LG+ ++ E+  + LL ++  T+
Sbjct: 638 GAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689


>gi|312898543|ref|ZP_07757933.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359]
 gi|310620462|gb|EFQ04032.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359]
          Length = 672

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/713 (33%), Positives = 371/713 (52%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  ++A   L  L +++ ++   YY   KP I D +YD L R  + I  A P+   +   
Sbjct: 1   MEQDKAYARLLELREKLDFYSYQYYTLDKPTITDYDYDMLYRELETIEGAHPEWVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +++    K TH  P LSL  ++N  +LR+F  R+     ++      + +E
Sbjct: 58  DSPTQRVGHKISGGFNKYTHDRPMLSLGDVFNDNELREFDRRVRSDLGEQVPQ---YVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I + YE G FV    RGDG  GEDV+  +R I TIP  +  + P I E+RGEV
Sbjct: 115 LKIDGLAINLIYENGMFVRGVTRGDGVVGEDVTNNVRTIKTIPLKIDSHSPHI-EIRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+    F ALN +      +P+ANPRNAA+G LR+L+P     R L+FF + +G T  + 
Sbjct: 174 YMPVRAFDALNIQRSEDELEPFANPRNAAAGSLRQLDPQITAQRNLSFFAYAIGGTVGMT 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E+L+ ++ L F VN   R  ++   ++++ +     R  LPY  DG+V KV+ F+
Sbjct: 234 IHSQEELLEDLKKLRFHVNKEYRVFDSIEDVITFIHSWDERRDELPYATDGMVIKVNSFA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG   + PRW I++KF  ++A T++  I + +GRTG+LTP A L PV + G  +  
Sbjct: 294 QQELLGNTVKIPRWAIAYKFPPERAKTKVEGISVTVGRTGVLTPAADLTPVRLAGTTVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYIK            +DIR+GD V++++AGE+IP+VV  +V ER      F  
Sbjct: 354 ATLHNEDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVGPVVKERTGQENVFVM 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C   VVR          AA RC     C A   +++ HFVSR+A NI+GLG   
Sbjct: 403 PTHCPGCGHEVVRPDGE------AATRCVNP-ECPAILSQKVAHFVSRNAMNIDGLGDAI 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                +       I   +DI+ L++    S        GF D S  NL  ++   + + L
Sbjct: 456 TAQLLQQ----GLIHRVSDIYDLKKEDLISLE------GFADKSADNLLKAVEDSKKVGL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F+LGIR VGA+ AR LA+++ S +  A                L  +  +G  IA+
Sbjct: 506 ARVLFALGIRFVGAKAARILAEHFGSVEALAAA----------STEELTDIDEIGPRIAE 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  + +       V AL         +  +   S    + +V TG L+ + R +A+E V
Sbjct: 556 SVHTWIRTDEARKLVAALEAAGVDMTAQKRQTKGSAFRGEIVVLTGKLETMTRKEAEEAV 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
              G   +  ++ KT +++ G +PGSK EKA+ LG  I++EE+F+  +Q+  T
Sbjct: 616 VAGGGKCTGSVTGKTTLVVAGADPGSKYEKARSLGTPIISEEEFIAWIQRDKT 668


>gi|332653279|ref|ZP_08419024.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16]
 gi|332518425|gb|EGJ48028.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16]
          Length = 657

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/703 (34%), Positives = 375/703 (53%), Gaps = 50/703 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +E+  L +E++  +  YY    P + D +YD   RR + +  A P+L     P+ P  +
Sbjct: 4   AQEILELRKELNQANFEYYVKDDPTMSDYDYDHKLRRLEELEGAHPELI---TPDSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+   S  +VTH +P  SL+ +++ ++LR F  R+        +  + +++EPK+DG 
Sbjct: 61  VGGKALESFQQVTHRVPLESLQDVFDFDELRAFDQRVR-----GVEPKVSYSVEPKVDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y+ G+FV  A RGDG  GEDV+  ++ + +IP  +  ++P  + VRGEVY+ K  
Sbjct: 116 SVALEYQDGQFVRGATRGDGLVGEDVTENLKTVKSIPLSIP-DVPGTLIVRGEVYMPKKV 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN+E    G   +ANPRNAA+G LR+L+P     R L+  V  +            E
Sbjct: 175 FHALNEEREKRGEALFANPRNAAAGSLRQLDPKIAAQRRLDIAVFNIQWAENEDFHSHTE 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +  +   GF V   V   +T    V     +   R   P+DIDG V KVD+ + ++ LG
Sbjct: 235 GINYLADKGFKVIPHV-ICSTIEEAVEQVKAIGEGRENYPFDIDGAVIKVDDLAQRQTLG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PRW  ++K+  +   +RL DI IQ+GRTG+LTP A LEPV + G  +TNATLHN+
Sbjct: 294 STAKFPRWAAAYKYPPEVKPSRLTDIVIQVGRTGVLTPKAVLEPVRLAGTTVTNATLHNQ 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD VLV++AGE+IP+V+ +++ +R  DA P+ FP  CP 
Sbjct: 354 DFIT-----------EKDIRIGDTVLVRKAGEIIPEVLSVVMEKRPVDAVPYRFPDVCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V RD +       A  RCTG   C AQ L  L HF SRDA +IEGLG   ++   K
Sbjct: 403 CGAPVARDED------GAHIRCTGA-ECPAQLLRNLAHFASRDAMDIEGLGIAVVENLVK 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  ++ P D++ L          +  +   G  S  NL  +I K ++  L R +F+
Sbjct: 456 ----AGLVKTPGDLYFLHE------EDVAELERMGKKSAQNLLSAIEKSKSQDLSRLLFA 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
            GIR VG +  + LA+ + S  N                  L +V  +G I AQ+IV+++
Sbjct: 506 FGIRQVGQKAGKILAQRFGSLDNLQAAT----------VEELTQVDDIGAITAQSIVDWF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            +P++   + A LKE   ++   +K        K  V TGTL +  R +A + +   G  
Sbjct: 556 ASPQSQHLI-ARLKEAGVNMQAEQKGEDQRFAGKTFVLTGTLDRFTRAEATKMIEDRGGK 614

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  +S+KT  ++ G+  GSKL KAQ+LGV ++ +E+FL L++
Sbjct: 615 AAGSVSKKTTYVVAGEAAGSKLRKAQELGVPVLTQEEFLALME 657


>gi|296046569|gb|ADG86426.1| NAD-dependent DNA ligase [Francisella novicida]
          Length = 689

 Score =  742 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/712 (34%), Positives = 391/712 (54%), Gaps = 61/712 (8%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
             YY   +P + D+EYD L      +    P+L      + P  K+GG+   S  +VTH 
Sbjct: 20  HEYYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTI---DSPSQKVGGQALKSFTQVTHQ 76

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
           +P LSL+ +++++D   F+ R+       D+ +I F  EPK+DG  +++RYE G+ + AA
Sbjct: 77  LPMLSLDNVFSLDDFHAFVKRVKDRLN--DNQAIVFCAEPKLDGLAVSLRYEHGQLIQAA 134

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
            RGDG  GE+++  IR I +IP  L      + P+I+EVRGEV++ K  F ALN      
Sbjct: 135 TRGDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTXAKKR 194

Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--------------TSEIFAKG 253
           G K +ANPRNAA+G LR+L+      R L F+ + LG               T++ FA  
Sbjct: 195 GEKGFANPRNAAAGSLRQLDSKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANS 254

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E L +++ LG P+   VR   +     ++Y ++ + RS L Y+IDG V KVDE SLQK
Sbjct: 255 HHERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQK 314

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NATL
Sbjct: 315 RLGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATL 374

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D I  L            ++V D V+++RAG+VIP++V +++++R  +A    FP+ 
Sbjct: 375 HNQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTS 423

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V +          A  RCT GL C+AQ+ E +KHF SR A +++GLG + ++ 
Sbjct: 424 CPVCDSAVAKPEGE------AVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQ 477

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               +     I   AD+F L   Q      +  I   G  S TNL + + + ++ +L +F
Sbjct: 478 LVDEK----LINTXADLFKLTEIQ------VSTIDRMGKKSATNLINGLEQAKSTTLAKF 527

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIR VG   A +LA ++ +          + A  +     L  V  VG+++A+ I+
Sbjct: 528 IYGLGIREVGEATAANLANHFYT----------LAAIESASLEDLQNVSDVGEVVAKNII 577

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F++   N+  V  L + +       +      +  +  V TGTL ++ R +A+  +  L
Sbjct: 578 NFFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQIFVLTGTLTQMGRTEAKTALQSL 637

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GA VS  +S+ T  ++ GD  GSKL KAQ LG+ ++ E+  + LL ++  T+
Sbjct: 638 GAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689


>gi|270290149|ref|ZP_06196375.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4]
 gi|270281686|gb|EFA27518.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4]
          Length = 675

 Score =  742 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/717 (32%), Positives = 378/717 (52%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE +++ +A +    L +++    + YY    P + D  YD       A+  AFP++A 
Sbjct: 6   PIEKMNLTEANELAEQLREKLDRWSELYYTKDAPEVEDYVYDENYADLQALEQAFPEIA- 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+    ++GGE+     KVTH+ P LS+  +++ E+L +F  RI +       + + 
Sbjct: 65  --SPDSITQRVGGEVLAGFTKVTHTEPMLSMGDVFSKEELAEFDQRIQKNVG----HPVD 118

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  I++ YE GK V  + RGDG+ GED++  ++ I ++P+ LS   P  +EV
Sbjct: 119 YNVELKIDGLAISLVYEDGKLVQGSTRGDGNIGEDITKNLKTIKSVPQTLS--RPLSLEV 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN++  A G+  +ANPRNAA+G LR+LN      R L+ F++ L + 
Sbjct: 177 RGECYMPKAAFAKLNEQQSAAGKSVFANPRNAAAGSLRQLNTQITKARELDTFIYTLVEP 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             +  + Q+E +Q M  LGF  N      ++   +  Y    +  R  LPY IDG+V KV
Sbjct: 237 EVLGVQTQHEAIQAMAELGFNTNPTQTVCHSLDEVWDYIERYEGQRDDLPYGIDGIVLKV 296

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++  LQ +LG   + PRW I++KF  ++ +T + DI+  +GRTG++TP A ++PV + G 
Sbjct: 297 NDLGLQAELGHTVKVPRWEIAYKFPPEEEATVVRDIEWSVGRTGVVTPTAVMDPVQLAGT 356

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATL+N D +             +D+R+GD VL+ +AG++IP++  +++++R  D  
Sbjct: 357 TVSRATLNNVDQLTA-----------KDVRIGDTVLLHKAGDIIPEITRVVLDKRPADVA 405

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
             + P+ CP C   +V            A RC     C AQ + RL+HF SR+A NI GL
Sbjct: 406 DLTIPNQCPSCGKELVHLNGE------VALRCINP-DCPAQIVARLEHFGSRNAMNIMGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+   +        I    D++ L   Q         + GF +  V NL ++I++ R
Sbjct: 459 GPKQIQQLYAK----GFIHHFDDLYKLTADQL------SQLDGFKEKRVNNLLEAIDRSR 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SLER +  LGI+ VG ++AR+LA+ + S     +                  V  VG+
Sbjct: 509 QNSLERLVNGLGIQGVGTKMARTLAEAFGSMDRLMEA----------SVEEFDAVDTVGE 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQR 663
            +A  +  F+Q+      ++ L            +  +   +    KK+V TG L+   R
Sbjct: 559 TLANNLATFFQSEAARNMIDELKAVDVNMEYLGAQPSEAPENYFNGKKVVLTGKLEHFTR 618

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +E +  LGA V+  +S+KTD++I G + GSKL KAQ LGV++++E   L  L+Q
Sbjct: 619 NELKEKLLNLGADVAGSVSKKTDVLIAGADAGSKLTKAQDLGVEVIDEATALEKLEQ 675


>gi|300867541|ref|ZP_07112191.1| DNA ligase [Oscillatoria sp. PCC 6506]
 gi|300334429|emb|CBN57361.1| DNA ligase [Oscillatoria sp. PCC 6506]
          Length = 690

 Score =  742 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/730 (31%), Positives = 356/730 (48%), Gaps = 65/730 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + + ++ +  L +++      YY    PI+ D  YD L R    +    P+L   E    
Sbjct: 2   MPEVQQRVQQLRKQLQEASYAYYVLDTPIMPDEVYDRLYRELQELETQHPELISLE---S 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------ 127
           P  ++G +       V H+IP  SLE  +NIE+  K+  R  R     +           
Sbjct: 59  PTQRVGEKPATHFSSVRHNIPLYSLENAFNIEEFIKWEERWQRGIGTNEGELATGNTLES 118

Query: 128 ---------FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
                    +  E KIDG+ + + YE G  V  A RGDG +GE+++  ++ I +IP  L 
Sbjct: 119 SQKTSPVSKYVCELKIDGSALALTYENGILVRGATRGDGVTGEEITQNVKTIRSIPLQLQ 178

Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
           L + P ++EVRGE ++S   F  +N E    G   +ANPRNAA+G LR+L+   +  R L
Sbjct: 179 LEDCPPLVEVRGEAFLSLAVFEEINQEREKSGDSLFANPRNAAAGTLRQLDSKIVAKRRL 238

Query: 237 NFFVHGL---GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +FF + L   GK     A  Q + L+ ++ +GF VN   +       +  YY      R 
Sbjct: 239 DFFAYTLQIPGKEDIEVADTQCKSLELLQQMGFKVNPNRQLCLALDEVREYYQYWDIERR 298

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            LPY  DG+V K+++  LQKQLG   + PRW ++ K+  ++A T +  I + +GRTG LT
Sbjct: 299 NLPYMTDGVVVKINDLRLQKQLGFTQKFPRWAVALKYPAEEAPTLVESIAVSVGRTGALT 358

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G  ++ ATLHN D I  L+           I +GD V+V++AGE+IP+V
Sbjct: 359 PVAELKPVQLAGTTVSRATLHNSDRILSLN-----------IHIGDTVIVRKAGEIIPEV 407

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           V ++   R   AQ F  PS CP C   VVR+         A  RC    +C A     L 
Sbjct: 408 VRVLPELRPEGAQSFQMPSCCPECGQPVVREKGE------AVTRCINT-SCPAILRGALI 460

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
           HF SRDA +I G+G++ +     S      +   ADI+ L         ++ N+   G  
Sbjct: 461 HFCSRDAVDINGIGEKLVQQLVDSN----LVHSVADIYDLT------VERLMNLERMGKK 510

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
               L  +I   +     R ++ LGIRHVG+  A  L + +   +  A      I     
Sbjct: 511 LADKLVGAIANSKTQPWSRILYGLGIRHVGSVNAVLLTERFPDVEQLAAASAATIEG--- 567

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIEN 649
                  V  +G  IAQ++ +++Q P N   +E L        S +     +  +  +  
Sbjct: 568 -------VYGIGPEIAQSVYQWFQVPANQNLIERLKVAGLQLKSEATSNKVEGKNLLLAG 620

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K  V TGTL  ++R +A+E + + G  V+  +S KT+ ++VG++ GSKLEKAQ+LG+  +
Sbjct: 621 KVFVITGTLPTLKRDEAKELIQKAGGKVTNSVSAKTNYLVVGEDAGSKLEKAQELGIVQL 680

Query: 710 NEEQFLFLLQ 719
           +E Q L +++
Sbjct: 681 SEAQLLEMIK 690


>gi|158334366|ref|YP_001515538.1| NAD-dependent DNA ligase LigA [Acaryochloris marina MBIC11017]
 gi|190359221|sp|B0C308|DNLJ_ACAM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158304607|gb|ABW26224.1| DNA ligase, NAD-dependent [Acaryochloris marina MBIC11017]
          Length = 675

 Score =  742 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/709 (30%), Positives = 349/709 (49%), Gaps = 49/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L Q +      YY    P++ D+ YD L      +   +P L     P+ P  +
Sbjct: 9   QARVQELRQLLQKASYAYYGLDAPLMEDAVYDQLYHELVDLEAQYPQLI---TPDSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G         V H IP  SLE  ++  D+  +  R ++           +  E KIDG+
Sbjct: 66  VGERPATQFVSVQHRIPLYSLENAFDRGDMDTWDERWHKLVPNL-SQEPGYVTELKIDGS 124

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            + + YE G  V    RGDG  GE+++  +R I +IP  L++ + PE +EVRGE ++   
Sbjct: 125 ALALTYENGLLVRGTTRGDGTKGEEITQNVRTIRSIPLRLNIEHPPEWLEVRGEAFLGLQ 184

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTSEI-FA 251
            F  +N + I  G   +ANPRNAA+G LR+L+   +  R L+FF + +   G T ++   
Sbjct: 185 VFDQINRDRIQAGEAEFANPRNAAAGTLRQLDSKVVAERKLDFFAYTIHISGPTDDLALP 244

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q++ L+ ++ LGF VN   RQ  +   + +YY++    R  LPY  DG+V K+D   +
Sbjct: 245 QTQWQALETLKQLGFRVNPNRRQCESLAEVQTYYDDWSLKRLDLPYLTDGVVIKLDNLGV 304

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG   + PRW I+ K+  ++A+TR+  I + +GRTG LTPVA  +PV + G  ++ A
Sbjct: 305 QDELGFTQKFPRWAIAWKYPPEEAATRIEQITVNVGRTGALTPVAEFKPVQLAGTTVSRA 364

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           DI +GD V+V++AGE+IP+V+ ++   R   AQP+  P
Sbjct: 365 TLHNRDRISEL-----------DIHIGDTVVVRKAGEIIPEVLRVLPELRPAGAQPYQMP 413

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C    V+          A  RC    +C A     L H+VSR A +I+GLG++ +
Sbjct: 414 TACPSCGQPAVQLETE------AVTRCVNA-SCPAILRGSLIHWVSRGALDIDGLGEKIV 466

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                S+     ++  AD++ L   +     ++             +  +I   +     
Sbjct: 467 GQLTDSQM----VQSVADLYELNEDKLMDLDRMGT------KLARKIVSAIATSKQQPWH 516

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRHVG+  A+ L + Y +         + IA           +  +G  IAQ+
Sbjct: 517 RVLYGLGIRHVGSVNAQLLTENYPTVDALMAVDGDKIA----------TIHGIGPEIAQS 566

Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + E++Q P N   ++ L    +       E      +  K  V TGTL  ++R +A++ +
Sbjct: 567 VYEWFQTPTNQTLIQRLQSAGLQFEAIVSESTQPQTLSGKTFVITGTLPTLKRDQAKQMI 626

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  V+  +S+ T  ++VG + GSKL KAQ LG+  ++E   L LLQ
Sbjct: 627 QDAGGKVTGSVSKNTSYVVVGADAGSKLTKAQSLGINQLSEADLLALLQ 675


>gi|304385588|ref|ZP_07367932.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284]
 gi|304328092|gb|EFL95314.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284]
          Length = 675

 Score =  742 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/717 (32%), Positives = 377/717 (52%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE +++ +A +    L +++    + YY    P + D  YD       A+  AFP++A 
Sbjct: 6   PIEKMNLTEANELAEQLREKLDRWSELYYTKDAPEVEDYVYDENYADLQALEQAFPEIA- 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+    ++GGE+     KVTH+ P LS+  +++ E+L +F  RI +       + + 
Sbjct: 65  --SPDSITQRVGGEVLAGFTKVTHTEPMLSMGDVFSKEELAEFDQRIQKNVG----HPVD 118

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  I++ YE GK V  + RGDG+ GED++  ++ I ++P+ LS   P  +EV
Sbjct: 119 YNVELKIDGLAISLVYEDGKLVQGSTRGDGNIGEDITKNLKTIKSVPQTLS--RPLSLEV 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN++  A G+  +ANPRNAA+G LR+LN      R L+ F++ L + 
Sbjct: 177 RGECYMPKAAFAKLNEQQSAAGKSVFANPRNAAAGSLRQLNTQITKARELDTFIYTLVEP 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             +  + Q+E +Q M  LGF  N      ++   +  Y    +  R  LPY IDG+V KV
Sbjct: 237 EVLGVQTQHEAIQAMAELGFNTNPTQTVCHSLEEVWDYIERYEGQRDDLPYGIDGIVLKV 296

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++  LQ +LG   + PRW I++KF  ++ +T + DI+  +GRTG++TP A ++PV + G 
Sbjct: 297 NDLGLQAELGHTVKVPRWEIAYKFPPEEEATVVRDIEWSVGRTGVVTPTAVMDPVQLAGT 356

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATL+N D +             +D+R+GD VL+ +AG++IP++  +++++R  D  
Sbjct: 357 TVSRATLNNVDQLTA-----------KDVRIGDTVLLHKAGDIIPEITRVVLDKRPADVA 405

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
             + P+ CP C   +V            A RC     C AQ + RL+HF SR+A NI GL
Sbjct: 406 DLTIPNQCPSCGKELVHLNGE------VALRCINP-DCPAQIVARLEHFGSRNAMNIMGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+   +        I    D++ L   Q         + GF +  V NL ++I+  R
Sbjct: 459 GPKQIQQLYAK----GFIHHFDDLYKLTADQL------SQLDGFKEKRVNNLLEAIDSSR 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SLER +  LGI+ VG ++AR+LA+ + S     +                  V  VG+
Sbjct: 509 QNSLERLVNGLGIQGVGTKMARTLAEAFGSMDRLMEA----------SVEEFDAVDTVGE 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQR 663
            +A  +  F+Q+      ++ L            +  +   +    KK+V TG L+   R
Sbjct: 559 TLANNLATFFQSEAARNMIDELKAVDVNMEYLGAQPSEAPENYFNGKKVVLTGKLEHFTR 618

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +E +  LGA V+  +S+KTD++I G + GSKL KAQ LGV++++E   L  L+Q
Sbjct: 619 NELKEKLLNLGADVAGSVSKKTDVLIAGADAGSKLTKAQDLGVEVIDEATALEKLEQ 675


>gi|326573825|gb|EGE23778.1| NAD-dependent DNA ligase [Moraxella catarrhalis O35E]
          Length = 691

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/711 (37%), Positives = 396/711 (55%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|326570074|gb|EGE20120.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC7]
          Length = 691

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/711 (37%), Positives = 396/711 (55%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|159036755|ref|YP_001536008.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205]
 gi|190359280|sp|A8M5E3|DNLJ_SALAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157915590|gb|ABV97017.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205]
          Length = 710

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/716 (31%), Positives = 356/716 (49%), Gaps = 43/716 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+  ++L  E++ H   YY    P I D+E+D   R   A+   FP L     P+ P  
Sbjct: 25  ARERHATLSLELTEHQYRYYVLDAPTISDAEFDERLRELAALEAEFPAL---RTPDSPTQ 81

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     V H+   +SL+  +  E+L  +  R+ R         + +  E K+DG
Sbjct: 82  RVGGAFSTDFTPVAHAERMMSLDNAFTDEELDAWAERVER----DAGGPVPYLCELKVDG 137

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEV 191
             I + YE+G+ V AA RGDG +GEDV+A +R+I  +P  L+ +     IP ++EVRGE+
Sbjct: 138 LAINLTYERGRLVRAATRGDGRTGEDVTANVRSIRDVPAELAPSAEFPEIPGLLEVRGEI 197

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G      
Sbjct: 198 YFPIAGFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARQGWQ 257

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    +R  G P ++  R      G+  Y     + R  + ++IDG+V KVD  S
Sbjct: 258 PSTQSESYAALRAWGLPTSDRWRVVPDLAGVAEYIAHYATHRHDVEHEIDGVVVKVDPVS 317

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I+ K+  ++ +TRLLDID+ +GRTG +TP A LEPV + G+ +  
Sbjct: 318 IQGRLGSTSRAPRWAIAFKYPPEEVNTRLLDIDVNVGRTGRVTPFAVLEPVRVAGSTVAL 377

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   ++            + + +GD V++++AG+VIP+V+  +V  R PDA+ F  
Sbjct: 378 ATLHNAREVRR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRPPDARSFVM 426

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP C + +         +     RC    +C AQ  ER+ H   R AF+IE LG + 
Sbjct: 427 PSTCPCCGTPL-----APAKEGDVDIRCPNTRSCPAQLRERVFHLAGRGAFDIEVLGYKG 481

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 ++     I    D+F L   Q T +    N  G    +   L D++   +   L
Sbjct: 482 AAALLDAQI----ITDEGDLFALDAAQLTRSPFFVNKDGSLGSNAVKLLDNLTVAKEREL 537

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LA+++ S +   Q     ++           V  VG  IA 
Sbjct: 538 WRVLVALSIRHVGPTAAQALARHFRSIEAIDQAGEEELSA----------VDGVGPTIAA 587

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ E++    +   V    +                +E   +V TGTL    R +A E +
Sbjct: 588 SVREWFAVAWHREVVRKWAEAGVRMTEEAVDEGPRPLEGMTVVVTGTLAGFSRDQAAEAI 647

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
              G  V+  +S+KT  ++VG+NPG+K +KA  L V +++EE F  LL       R
Sbjct: 648 QSRGGKVTGSVSKKTAFVVVGENPGTKADKAASLKVPVLDEEGFRVLLDAGPDAAR 703


>gi|291544905|emb|CBL18014.1| DNA ligase, NAD-dependent [Ruminococcus sp. 18P13]
          Length = 660

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/706 (31%), Positives = 365/706 (51%), Gaps = 51/706 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQA+  L+ L +EI  H+  YY    P I D +YDAL R   AI   +P L     P
Sbjct: 1   MDFEQAKLRLAQLTKEIEQHNYAYYVLDAPTIEDCDYDALMRELKAIETEYPQLL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       KVTH++   SL  +++ E++  F+    +       ++  FT+E
Sbjct: 58  HSPSQRVGGMALSDFQKVTHTVQMGSLRDVFSFEEVAAFVAECQQKL-----DAPRFTVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ YE G     + RGDG  GEDV+  IR I +IP  L  + P ++EVRGEV
Sbjct: 113 PKIDGLSVSLLYENGVLTCGSTRGDGFVGEDVTGNIRTIRSIPLRL-EDAPALLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ ++ FL L ++      +P+ NPRNAA+G LR+ +      R L+ FV  + + +   
Sbjct: 172 FMPRDSFLKLVEQQELADEQPFKNPRNAAAGSLRQKHAEVTAKRRLDIFVFNVQQMTGGL 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  MR LGF      R   T+  I    + +   R+ LPYDIDG+V KV++ +
Sbjct: 232 HGTHAESLTWMRKLGFKTVE-FRLCETYQEIREQISRIGEERAKLPYDIDGVVIKVNDLA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ +G   + P+W +++KF  ++  TRL  I++ +GRTG +TPVA  +P+ + G  ++ 
Sbjct: 291 QRQVMGATTKVPKWAVAYKFPPEEKETRLQKIEVNVGRTGAITPVAVFDPITLAGTSVSR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A LHN+ +I             +DIRVGD + V++AGE+IP+V+  + ++  PD+ P++ 
Sbjct: 351 AVLHNQQFI-----------ADKDIRVGDMIRVRKAGEIIPEVLASVSHQ--PDSVPYTL 397

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C +  VRD         +  RC     C AQ L+ + HF S+ A NI+G+G   
Sbjct: 398 PTHCPVCGTEAVRDPEE------SVLRCPNT-DCPAQLLKNVIHFASKGAMNIDGMGPAI 450

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 +      IR  AD++TL      S  +      F + S  NL D+I K ++  L
Sbjct: 451 AQALLDNGK----IRSVADLYTLTMEDLLSLDR------FAEKSARNLLDAIEKSKSAPL 500

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R IF LGIR +G   A  L   + S +             N     L  +   G I+A+
Sbjct: 501 DRVIFGLGIRGIGQRAAVLLCDRFPSVEQIM----------NASVEQLAEIDGFGSIMAE 550

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++V+ ++ P  +  V+ L         +  +           V TGTL  ++R +A++ +
Sbjct: 551 SVVQAFREPHRVALVQRLQACGVTMQYQAAQAQDQRFVGMTFVLTGTLPTMKRDEAKKLI 610

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
              G  VS  +S+KT +++ G++ GSKL KA+ LGV++++E + L 
Sbjct: 611 ESFGGKVSGSVSKKTSVVVAGEDAGSKLMKAESLGVEVIDEAELLR 656


>gi|150021387|ref|YP_001306741.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
 gi|190359297|sp|A6LN55|DNLJ_THEM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149793908|gb|ABR31356.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
          Length = 662

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/706 (32%), Positives = 378/706 (53%), Gaps = 47/706 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++E+  L +EI YH+  YY  + PII D EYD L ++   +   +P       PN 
Sbjct: 1   MKNIKEEIERLRKEIEYHNYRYYVLADPIISDEEYDRLLKKLIELEKKYPKF---SSPNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GG +     KV H+ P LSL+  +N  ++++F  RI R   +   NS+ +  E K
Sbjct: 58  PTQKVGGGVISGFEKVEHTTPMLSLDNTYNETEIKEFDNRIKRLLNR---NSVEYVCELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++IRYE G+F  A  RG+G  G+D++  ++ I +IP  L       IEVRGE+++
Sbjct: 115 IDGISVSIRYENGEFRQAISRGNGIIGDDITENVKKIKSIPLRLFKKY--TIEVRGEIFM 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
              +F   N      G +P+ANPRNAA+G +R+L+ + +  R L+ F++ +        K
Sbjct: 173 PIKEFEKYNKIAEEEGLQPFANPRNAAAGTIRQLDSSIVAKRNLDSFIYYIVNPENYSLK 232

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q+E L  ++ LGF VN           I+ ++ +M   R  L Y IDGLV KV+ F  Q
Sbjct: 233 TQWEALDFLKKLGFKVNRQSILCKNVECIIDFWKKMTKERKNLDYWIDGLVIKVNNFEFQ 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LGE ++SPRW I+ KF   +  T+++D+++ +GR+GI+TPVA  EP+++ G ++  A+
Sbjct: 293 KILGETSKSPRWAIAFKFPAIKKKTKIIDVELNVGRSGIITPVAIFEPIDLDGTIVKRAS 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN +YI+            +DIR+GD V +++AG +IP+VV ++  +R    +    P 
Sbjct: 353 LHNFEYIQD-----------KDIRIGDYVYIEKAGGIIPQVVSVVKEKRTGLEKEIKIPK 401

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C   V      K  +   A RC     C  +    L+ FVS+ AF+I G+G++ +D
Sbjct: 402 SCPVCNGPV-----GKLTEDEIAIRCLNP-HCPQKLKRHLEIFVSKSAFDISGIGEKIID 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               ++     I+  ADIF L             I G G  S+  + + I K +   L R
Sbjct: 456 KIVDAK----LIKDIADIFYLTPFDLA------QISGLGQKSIAKILEQIEKSKKTPLNR 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I  LGI  VG + ++ LA+ + + +            ++  +  LI++  +G  IA++I
Sbjct: 506 VIVGLGIPMVGEKTSKILAEKFKNIEKL----------SSATYDELIKIENIGPEIAKSI 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           V ++QN +    +  L K+   ++   +   S +++      TG L+   R + ++ + +
Sbjct: 556 VTYFQNEKTKEIINKL-KKAGVNLEEKDVKKSDKLKGLTFAITGKLKSYTREEIKKIIEE 614

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G  VS  +S KT+ +I G+ PGSKLEKA++L +KI++EE FL L+
Sbjct: 615 NGGKVSNSVSSKTNFLIAGEEPGSKLEKAKRLNIKIISEEDFLKLI 660


>gi|326796428|ref|YP_004314248.1| DNA ligase [Marinomonas mediterranea MMB-1]
 gi|326547192|gb|ADZ92412.1| DNA ligase [Marinomonas mediterranea MMB-1]
          Length = 680

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/708 (34%), Positives = 383/708 (54%), Gaps = 45/708 (6%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           + +L  +++ +   Y+    P + DSEYD L +    I    P   +   P+ P  ++G 
Sbjct: 12  VKTLVSQLNDYSYSYHVKDDPKVPDSEYDRLYKALQLIELKNPQWIQ---PDSPTQRVGE 68

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           + +     V H++  LSL+  ++ + + +F  R+ +   +  D  I F  EPK+DG  I+
Sbjct: 69  KPDTGFANVEHTVAMLSLDNAFDDDSMLEFNERVKKLLNESAD--IEFCCEPKLDGLAIS 126

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFL 199
           +RYE G  V    RGDG SGED+++ IR I T+P  L  +  P ++EVRGE+Y+ K  F 
Sbjct: 127 LRYEDGVLVRGVTRGDGLSGEDITSNIRTIHTVPLKLRTDTPPPVVEVRGEIYMPKEGFE 186

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQYEM 257
            LN        K + NPRNAA+G LR+L+P    +R L    + +G +      +  Y+ 
Sbjct: 187 VLNALAKQKDEKLFVNPRNAAAGSLRQLDPKITASRPLVLCAYSIGFSEGWTQPQSHYDG 246

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++   GF +N+ + +     G +SYY ++   R  L YDIDG+VYKVD  + Q++LG 
Sbjct: 247 LIQLGDWGFKINDRMERVTGIQGCLSYYEKLNQDRPALTYDIDGIVYKVDSIAKQQELGF 306

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            AR+PRW I+ KF  ++  T++  ID Q+GRTG +TPVARLEPV +GG  ++NATLHN+D
Sbjct: 307 IARAPRWAIARKFPAQEEITQIKGIDFQVGRTGAITPVARLEPVFVGGVTVSNATLHNKD 366

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I  L            +RV D V+++RAG+VIP+VV +++ +R        +P  CP+C
Sbjct: 367 EIARL-----------GVRVNDWVIIRRAGDVIPQVVQVVLEKRPEGTVSVEYPDSCPVC 415

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S   +          A  RC GGL C+AQ  E LKHFVSR A +I+GLG + ++    +
Sbjct: 416 GSHTEQVEGE------AVIRCAGGLVCNAQLKESLKHFVSRKAMDIDGLGDKLIEQLVDN 469

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           +     ++ PADI+ L  ++     ++ ++   GD SV  L  SI+  +N    RFI++L
Sbjct: 470 K----LVQTPADIYKLHEKE----ARLLDLERMGDKSVDKLLTSIDASKNTLFNRFIYAL 521

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG   A++L K+Y +     Q           D  SLI+V  VG I+AQ +  F++
Sbjct: 522 GIREVGEATAKALTKHYKALDALIQA----------DQESLIQVSDVGPIVAQHVQRFFE 571

Query: 618 NPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             +NI  +  L++      +           +  K  V TGTL +  R + +E + QLGA
Sbjct: 572 QEQNIVVINELIELGIQWDAPAEAAGESEQPLLGKTYVVTGTLNEFTREEIKEKLQQLGA 631

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            VS  +S KTD ++ G+  GSKL KAQ L V +++E+  +  L++   
Sbjct: 632 KVSGSVSGKTDCLVAGEKAGSKLAKAQSLNVPVLDEQGIIAFLKEQGA 679


>gi|332686164|ref|YP_004455938.1| DNA ligase [Melissococcus plutonius ATCC 35311]
 gi|332370173|dbj|BAK21129.1| DNA ligase [Melissococcus plutonius ATCC 35311]
          Length = 678

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/720 (33%), Positives = 386/720 (53%), Gaps = 52/720 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            L++ +A      L+++++ +   YY   KP + D  YD L +    I  A+PDL  S  
Sbjct: 6   PLTLTEATDRADELKEQLNQYSYEYYVQDKPSVEDYVYDRLYKELSEIETAYPDLITS-- 63

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KV H     SL   ++ ED+  F  RI+R      D    +  
Sbjct: 64  -DSPTQRVGGKILPGFEKVHHDSTMYSLNDGFSKEDIYNFDERIHRL----TDQPFTYCC 118

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  I++RY+ G+ V  A RGDG  GE+++  ++ + +IP  L LN    IEVRGE
Sbjct: 119 ELKIDGLAISLRYKNGELVLGATRGDGTIGENITENLKTVRSIP--LRLNKSISIEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            Y+ K  F+ LN E    G   +ANPRNAA+G LR+L+      R LN F++ +     +
Sbjct: 177 CYMPKTSFVRLNQEREEEGCDIFANPRNAAAGSLRQLDSRITAKRNLNTFLYTVADFGSM 236

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK Q++ L ++  +G   N   R   T   + S+  E    R+ LPY+IDG+V KV+EF
Sbjct: 237 TAKNQFDALNELTTIGIRTNPEKRLCQTIDEVWSFIEEYHEKRNELPYEIDGIVIKVNEF 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S Q +LG   ++PRW I++KF  ++A T + +I+  +GRTG++TP A ++PV I G  ++
Sbjct: 297 SEQNKLGFTVKAPRWAIAYKFPPEEARTTVNEIEWTVGRTGVVTPTAIMDPVRIAGTTVS 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D+I+            +DIR+ D V++ +AG++IP+V   +V  R  ++ P+ 
Sbjct: 357 RASLHNFDFIQM-----------KDIRLKDEVIIYKAGDIIPEVAKALVETRTNESVPYQ 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            PS CP+CQS +V            A RC     C AQ  E L HFVSR+A NI GLG +
Sbjct: 406 APSHCPVCQSELVHLDEE------VALRCINP-KCPAQIKEGLNHFVSRNAMNIAGLGPR 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L   ++ +     ++  AD++ +   Q  +  KI+      + S  N+Y +I   +N S
Sbjct: 459 ILAQLYEKK----LVKDVADLYFVTEEQLMTLEKIK------EKSANNIYQAIAASKNNS 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E  IF LGIRHVGA+ A+ LA+++   +  +Q           +  S++ +  +G+IIA
Sbjct: 509 VEHLIFGLGIRHVGAKAAKILAEHFGDLKTLSQA----------NQESIMVLDSIGEIIA 558

Query: 610 QAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +++V +++       +    +A +          + N  S  +NK +V TG L    R +
Sbjct: 559 ESVVAYFEKIEVQELLVELEKAGINFKYTGTRPEQLNGDSFFKNKTVVLTGKLTNYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           A+E +  LG  V+  +S+KTDI+I G+  GSKL  A++L V + +E Q    L+ ++ T+
Sbjct: 619 AKEQIESLGGNVTNSVSKKTDIVIAGEASGSKLAAAKELEVTVWDENQLTEALENHHPTV 678


>gi|305667253|ref|YP_003863540.1| DNA ligase [Maribacter sp. HTCC2170]
 gi|88708187|gb|EAR00425.1| DNA ligase [Maribacter sp. HTCC2170]
          Length = 664

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/706 (32%), Positives = 366/706 (51%), Gaps = 48/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R+++ +L  E+  H+  YY    P I D ++D   +    +    P+     D   P  
Sbjct: 3   VRQKIEALRAELREHNHNYYVLDNPTISDYDFDMKLKELQELEAKHPEF---YDATSPTL 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++  +   + H     SL+  ++ EDL  +  RI R      D  + FT E K DG
Sbjct: 60  RVGGDITKNFNTIVHEHRMYSLDNSYSKEDLEDWEKRIQRILG---DAEVEFTCELKYDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YE GK   A  RGDG  G++V+A I+ I ++P  L  + P   ++RGE+ +  +
Sbjct: 117 ASISLTYEDGKLSKAVTRGDGFQGDEVTANIKTIRSVPLQLKGDYPPKFDIRGEIILPLD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  +N E +A G  PY NPRN ASG L+  +   +  R L+  ++G+          QY
Sbjct: 177 GFEKMNQERVAAGEDPYMNPRNTASGSLKLQDSAAVAQRPLDCLLYGIV-GPNTGITSQY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           EML+K R  GF V +  +   T   ++++       R  LPY+ DG+V KV+    Q +L
Sbjct: 236 EMLEKSRDWGFKVPSIAQLCKTIDEVMAFVEYWDVHRHDLPYETDGVVIKVNSLQHQDEL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  ++SPRW +++KF  +Q ST L +I  Q+GRTG +TPVA LEPV + G  +  A+LHN
Sbjct: 296 GYTSKSPRWAMAYKFKAEQVSTVLNEITYQVGRTGAITPVANLEPVLLAGTTVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           DIR  D V V++ GE+IPK++ + + +R  D++P  + + CP
Sbjct: 356 ADQIEKL-----------DIRERDTVFVEKGGEIIPKIIGVDIPKRPADSEPIKYITLCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C++ +VR       +  A H CT    C  Q   R++HF+SR A +IEGLG + ++  F
Sbjct: 405 ECETELVRT------EGDAKHYCTNFYGCPTQITGRIQHFISRKAMDIEGLGGETVELLF 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K       IR  AD++ L + Q     ++       + S  NL   +     I  ER +F
Sbjct: 459 KE----GLIRNYADLYILTKEQIMPLERMA------EKSAENLVKGVADSTTIPFERVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ LAK Y       + I+ ++A ++++    I V  +G+ IAQ++VEF
Sbjct: 509 ALGIRFVGETVAKKLAKAY-------KNIDALMAASSEEL---IAVDEIGERIAQSVVEF 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +QN RN+  +  L           +K ++    ++ K  V +G  + I R+  ++ +   
Sbjct: 559 FQNERNLDNIARLKSYGVQFEISADKLLNQTEILKGKTFVVSGVFETISRNDLKKLIEDN 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G  V + +S KT  ++ GD  G SK  KA++L + I+ E+ FL ++
Sbjct: 619 GGKVGSSISSKTSFLVAGDKMGPSKRTKAEKLDIPIITEQDFLNMV 664


>gi|108798849|ref|YP_639046.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. MCS]
 gi|119867964|ref|YP_937916.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. KMS]
 gi|126434449|ref|YP_001070140.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. JLS]
 gi|123369452|sp|Q1BAU4|DNLJ_MYCSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216212|sp|A3PXM2|DNLJ_MYCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216213|sp|A1UE68|DNLJ_MYCSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|108769268|gb|ABG07990.1| DNA ligase, NAD-dependent [Mycobacterium sp. MCS]
 gi|119694053|gb|ABL91126.1| DNA ligase, NAD-dependent [Mycobacterium sp. KMS]
 gi|126234249|gb|ABN97649.1| DNA ligase, NAD-dependent [Mycobacterium sp. JLS]
          Length = 701

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/735 (29%), Positives = 354/735 (48%), Gaps = 48/735 (6%)

Query: 1   MKKRQLI---PIEALSIEQA--RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRC 55
           M  +      P E  +  +A  R    +L  E+  H   YY    P+I D+++D L ++ 
Sbjct: 1   MSAKSTPDAGPQEQATEAEAELRHRWQALADEVRDHQFRYYVRDAPVISDADFDKLFQQL 60

Query: 56  DAIAHAFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114
           +A+    P+L     P+ P   +GG           H    LSL+ ++N+++L  + +R+
Sbjct: 61  EALEAEHPEL---RAPDSPTQLVGGAGFATDFTPAEHLERMLSLDDVFNVDELTAWSSRV 117

Query: 115 YRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
                    +   +  E K+DG  + + Y  G+   AA RGDG  GEDV+   R +  +P
Sbjct: 118 RAEVG----DDAAYLCELKVDGLALALVYRDGRLERAATRGDGRVGEDVTLNARTLDDVP 173

Query: 175 RVLS----LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
             L+       P ++EVRGEV+    DF ALN  ++A G+ P+ANPRN+A+G LR+ NP 
Sbjct: 174 ERLTPSDEFPHPAVLEVRGEVFFRVADFEALNAGLVAEGKPPFANPRNSAAGSLRQKNPA 233

Query: 231 DITR-YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
              R  L    HG+G T        +E    +R  G PV++   +      +        
Sbjct: 234 VTARRPLRMVCHGIGYTEGFSPTSLHEAYGALRAWGLPVSDHTTRVQGMDAVRERIAYWG 293

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  + ++IDG+V K+D+ +LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRT
Sbjct: 294 EHRHDIEHEIDGVVVKLDQIALQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIRVNVGRT 353

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TP A +EPV + G+ +  ATLHN   +K            + + +GD V++++AG+V
Sbjct: 354 GRVTPFAYMEPVKVAGSTVGLATLHNASEVKR-----------KGVLIGDTVVIRKAGDV 402

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IP+V+  +V+ R    + F  P+ CP C + +         +  A  RC     C AQ  
Sbjct: 403 IPEVLGPVVDLRDGTEREFVMPTHCPECGTEL-----APAKEGDADIRCPNSRTCPAQLR 457

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
           ER+ H   R AF+IEGLG +      +    A  I    D+FTL       T       G
Sbjct: 458 ERVFHVAGRGAFDIEGLGYEAAIALLQ----AGVITDEGDLFTLTEDDLLRTELFTTKGG 513

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
               +   L  ++ K +   L R + +L IRHVG   AR+LA  + S     +   + +A
Sbjct: 514 AVSANGRRLLANLGKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLDAIIEASEDQLA 573

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
                      V  VG  IA A+ E++    +   VE             + +++  +E 
Sbjct: 574 A----------VEGVGPTIAAAVKEWFTVDWHCAIVEKWRAAGVRMADERDASIARTLEG 623

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
             +V TG+L    R +A+E +   G   +  +S+KT  ++ GD+PGSK +KA  LGV ++
Sbjct: 624 LSIVVTGSLAGFSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDSPGSKYDKAIDLGVPVL 683

Query: 710 NEEQFLFLLQQYNTT 724
           +E+ F  LL+     
Sbjct: 684 DEDGFRNLLENGPQA 698


>gi|301299742|ref|ZP_07205992.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852673|gb|EFK80307.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 672

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/719 (33%), Positives = 397/719 (55%), Gaps = 55/719 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +    EL  L  +++   + YY    P + DS YD   +R   +  A PDL  +   
Sbjct: 1   MSQKDIEMELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KV+H IP LSL  +++ E+L +F+ R     +   +  + ++ E
Sbjct: 58  DSPSQRVGGKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLER----LENSVEQKLDYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE GKF+  + RG+G  GED++  ++ I  IP  L  N P  IEVRGE 
Sbjct: 114 LKIDGLAISLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIPMEL--NEPVSIEVRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN +  A G+  +ANPRNAA+G LR+L+     +R L+ F++ L +  ++ 
Sbjct: 172 YMPKKSFVELNTKREAEGQAVFANPRNAAAGSLRQLDTKITASRNLSTFIYYLMEPEKLG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E L K+   GF VNN  +Q  T   I +Y +E    R+ LPYDIDG+V K + F+
Sbjct: 232 IKTQTEALDKLESWGFKVNNESKQVKTKEEIFAYIDEATDQRANLPYDIDGIVLKAESFA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q Q+G   + PRW I++KF   +  T++LDI+  +GRTG++TP A +EPV + G  +  
Sbjct: 292 VQSQVGNTVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVAR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+K            +DIR+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 352 ASLHNPDYLK-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRPEDSVEYQI 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C +++V   +        A RC     C A   E L HF SR+A +I GLG + 
Sbjct: 401 PTECPECGAKLVHLDDE------VALRCINP-QCPALVKESLTHFTSRNAMDIRGLGPRI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  +  E     I+  A I++L   Q  +  K      F + S  NL  +I+  RN S+
Sbjct: 454 IEQLYNREM----IKDVAGIYSLTFEQLITLDK------FKEKSANNLLTAIDNSRNNSI 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA++AR LA+ Y S  N A+  ++ I+           +  +G+II  
Sbjct: 504 ERLIFGLGIRHVGAKVARILAENYKSMDNLAKAKSDEIS----------TIDSLGEIIGD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS-------IGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++  ++ +   +  ++ L +              + E +  S     ++V TGTL  ++R
Sbjct: 554 SVEMYFADEHVMELLDELRQAGVNMEFLGQTREEQLESSTDSSFNGLRVVLTGTLDTLKR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A+ ++   GA V+  +S+KTD++I G + GSKL KAQ+L V++MNE +F+  +++ +
Sbjct: 614 SEAKSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEEES 672


>gi|328954073|ref|YP_004371407.1| DNA ligase [Desulfobacca acetoxidans DSM 11109]
 gi|328454397|gb|AEB10226.1| DNA ligase [Desulfobacca acetoxidans DSM 11109]
          Length = 676

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/717 (34%), Positives = 385/717 (53%), Gaps = 49/717 (6%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +I    ++IE      + L  +I YHD  YY    P I D+EYD L R  + +       
Sbjct: 1   MIDNARITIE-IAARAARLRDQIHYHDYRYYVLDDPEISDAEYDLLFRELERLEEE---Y 56

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                P+ P  ++GG        VTH  P LSLE  ++  ++++F  R+ RF  ++    
Sbjct: 57  PELVTPDSPTQRVGGGPAEKFESVTHRQPMLSLENAFSEGEVQEFEPRLKRFLHQQA--E 114

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIP 182
             + LEPK+DG  + + YE G     A RGDGH GE+V+  +R I TIP VL       P
Sbjct: 115 FDYVLEPKMDGVAVNLTYEDGLLAIGATRGDGHRGENVTQNLRTIKTIPLVLRRETTPAP 174

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
             +EVRGEVYI   +F  LN    A G+  +ANPRNAA+G LR+L+P     R L  + +
Sbjct: 175 AFLEVRGEVYIELAEFKKLNAAREAQGQPAFANPRNAAAGSLRQLDPAVTAGRPLKIYCY 234

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G+G+ +       +E++Q ++  G  VN  V +       V+Y++ ++ +R  LPY+IDG
Sbjct: 235 GIGEVAGREFSSHWEVMQTLKTWGLRVNPYVDRCQGIEAAVAYHHRLEGLRHGLPYEIDG 294

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVD   LQ +LG ++RSPRW +++KFA  QA+T++  I +Q+GRTG +TP A + PV
Sbjct: 295 VVIKVDSLELQTRLGIKSRSPRWALAYKFAATQATTQVRKIIVQVGRTGAVTPTAIMAPV 354

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG  ++ ATLHNED +             +D+R GD VL++RAG+VIP+VV +I + R
Sbjct: 355 EVGGVTVSRATLHNEDEVAR-----------KDVREGDWVLIQRAGDVIPEVVKVITSRR 403

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               +PF  P  CP+C + +VR          A  RC     CSAQ    ++HF S+ A 
Sbjct: 404 TGREKPFKMPERCPVCDTPLVRPQGE------AVTRCPNP-DCSAQLKRAIRHFASKGAM 456

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+GLG++ ++           ++  AD++ LQ        +      F + S  N+  +
Sbjct: 457 DIDGLGEKIIEQLIDQ----GLVQDVADLYRLQASDLLPLER------FAEKSAQNIVQA 506

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   +  SL RFI++LGIR+VG   A  LA+++ +            A        L+ +
Sbjct: 507 IAGSKKPSLGRFIYALGIRYVGEATANLLARHFQTLN----------ALKAAAVEDLLLI 556

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  +A +I +++QNP+N   + A L + +       + +++ +  +  VFTG LQ++
Sbjct: 557 EGIGPQVAASIRDYFQNPKNQALL-AKLLQANLQPQAATQVLTTPLAGQTFVFTGRLQQL 615

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A+  VT  G  VS+ +S KTD ++VG +PG+K  +A +LG+ I++E  F  L+
Sbjct: 616 SRDEAKALVTAQGGKVSSSVSAKTDYLVVGKDPGTKYAQALELGLTILDEAGFAQLI 672


>gi|172056504|ref|YP_001812964.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15]
 gi|254781332|sp|B1YJ17|DNLJ_EXIS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171989025|gb|ACB59947.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15]
          Length = 664

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/712 (34%), Positives = 398/712 (55%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IEQA   +  L Q+++ +   YY   +P + DS YD L R    +  A P+L     P+ 
Sbjct: 2   IEQA--RIEELRQKLNQYSYEYYVQDQPTVPDSTYDQLLRELTELETAHPELI---TPDS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  KVTH +P LSL  +++  ++R+++ RI R   +    S  +  E K
Sbjct: 57  PTQRVGAAALDAFEKVTHDLPMLSLGNVFDETEIREWVARIERSLGR----STTYVAELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I+++YE G+ V  A RGDG  GE+++  +R I  +P  L  N  E +EVRGE Y+
Sbjct: 113 FDGLAISLKYEDGQLVRGATRGDGTVGENITQNLRTIKALPLRLRRN--ETVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K  F  LN +  A     +ANPRNAA+G LR+L+ +   +R L+ FV+G+G  + + A+
Sbjct: 171 PKQSFERLNADRAAREEALFANPRNAAAGSLRQLDSSITASRNLSLFVYGVG-VNTLSAR 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E + ++  LG P N  ++   T   I++Y       RS LPY+IDG+V KVD +  Q
Sbjct: 230 SHSEAMLQLAELGLPTNKEMQTCETVEEILAYIAHWTMERSNLPYEIDGIVLKVDRYDDQ 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  A+SPR+  ++KFA ++  T + ++D  +GRTG +TP AR  PV + G+ ++ AT
Sbjct: 290 EELGFTAKSPRFATAYKFAAEEVMTTVEEVDFSVGRTGKVTPRARFAPVVVAGSTVSYAT 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D+I             +DIR+ D+V++K+AG+VIP VV ++V+ER  + QP  FP+
Sbjct: 350 LHNADFIT-----------EKDIRLHDQVIIKKAGDVIPAVVSVVVSERTGNEQPIEFPA 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C+S +VR          A  RC     C AQ +E + HFVSR A NI+GLG++ + 
Sbjct: 399 HCPACESELVRLEGE------ADIRCV-SPECPAQLVEGIIHFVSRQAMNIDGLGEKVVR 451

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++ E    +IR  AD++ L R +  +  ++      G+ SV NL  +I   +  SLER
Sbjct: 452 QLYEHE----AIRTLADLYRLDRDELLTYERM------GETSVDNLLTAIEASKQNSLER 501

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIR VG + A  LA+ + S    AQ           ++  ++ +  +G  IA ++
Sbjct: 502 LMFGLGIRLVGQKAAYLLAERFDSLDGIAQA----------EYEDILAIDGIGSKIADSV 551

Query: 613 VEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            +++++P     ++ L +       +G+     ++ +  K +V TGTL+ ++R +A + +
Sbjct: 552 TKYFEHPEAQALIKDLAELGLNQQFLGQRVDQSNAPLAGKTIVLTGTLESLKRSEAGKRL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             LGA V+  +S+KTDI++ G+  GSKL KA+ LG++I NE Q L  L +Y 
Sbjct: 612 ELLGADVTGSVSKKTDILVAGEKAGSKLTKAESLGIEIWNETQLLEELAKYE 663


>gi|81373659|sp|Q5YRS7|DNLJ2_NOCFA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|54017744|dbj|BAD59114.1| putative DNA ligase [Nocardia farcinica IFM 10152]
          Length = 683

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/717 (31%), Positives = 362/717 (50%), Gaps = 42/717 (5%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
               L +E+  H   YY    PII D E+DAL R    +    PDL     P+ P   +G
Sbjct: 2   RWQRLAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDL---RTPDSPTQLVG 58

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G        V H    LSL+ ++++++LR +  R+    + +    + +  E KIDG  +
Sbjct: 59  GGFATDFTPVDHLERMLSLDNVFDVDELRAWAARV----EAETGPDLHYLCEVKIDGVAL 114

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYISK 195
            + YE+GK V AA RGDG +GEDV+   R I  +P  LS      +PE++EVRGEVY+  
Sbjct: 115 NLVYERGKLVRAATRGDGRTGEDVTLNARTIEDVPGELSAGGEFPVPELLEVRGEVYLRL 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            DF ALN  ++A G+ PYANPRN A+G LR+ +P    R  L    HGLG+        Q
Sbjct: 175 ADFEALNAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICHGLGRIEGYTPASQ 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E  + +   G PV+   R+      ++         R  + ++IDG V KVDE SLQ++
Sbjct: 235 FEAYRALSAWGLPVSEHTRRVRGIDAVIERVAYWGEHRHDIEHEIDGQVIKVDETSLQRR 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++A+T+L  I++ +GRTG +TP A +EPV I G+ +  ATLH
Sbjct: 295 LGATSRAPRWAIAYKYPPEEATTKLRAIEVNVGRTGRVTPFAVMEPVVIAGSTVAMATLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K            + + +GD V +++AG+VIP+V+  +V+ R    + F  P+ C
Sbjct: 355 NASEVKR-----------KGVLIGDTVTIRKAGDVIPEVLGPVVDARTGAEREFVMPTHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +         +  A  RC    +C AQ  ER+ H   R AF+IE LG +     
Sbjct: 404 PECGTEL-----APEKEGDADIRCPNQRSCPAQLRERVYHVAGRSAFDIEALGYEAAIDL 458

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +S     +I    D+F L   +  +T+   N  G    +   L ++++  ++  L R +
Sbjct: 459 LQS----GAIGDEGDLFDLDEARLLTTSLFTNKNGSLSANGKRLLENLDAAKDRPLWRVL 514

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             L IRHVG   AR+LA  + S +   Q   + +A              VG  IA A+ E
Sbjct: 515 VGLSIRHVGPTAARALAAEFGSMERIEQASVDELAAT----------DGVGPTIAAAVAE 564

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++    +   V          +   ++++   +E   +V TG+LQ   R  A+E +   G
Sbjct: 565 WFTVDWHRAIVAKWRAAGVRMVDERDESIERTLEGLSIVVTGSLQGFSRDGAKEAILARG 624

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
              +  +S+KT  ++VGD PG+K  KA++LGV I++EE F+ LL +    +   + +
Sbjct: 625 GKAAGSVSKKTAFVVVGDAPGAKAAKAEELGVPILDEEGFVRLLAEGPAAVAAEEPE 681


>gi|229823252|ref|ZP_04449321.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271]
 gi|229787418|gb|EEP23532.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271]
          Length = 671

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/715 (31%), Positives = 370/715 (51%), Gaps = 56/715 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            +  +  +  L  ++  ++ +   YY   + ++ D+ YDAL R  + I  A P+      
Sbjct: 2   KMPSQNLQARLEEVKHLLNDYAYHYYVLDQSLVSDASYDALYRELEEIEAAHPEWI---T 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  ++G ++     KV H+    SL   ++ E++ +FI R+     ++ +  + F  
Sbjct: 59  PDSPTQRVGDQLLEGFSKVAHAESMYSLGNAFSPEEVTQFIERVT----QQVEGPVSFMC 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  I + Y+ G FV  A RGDG  GED++  +R I ++P  L  N+   +EVRGE
Sbjct: 115 ECKIDGLAIALTYQDGVFVRGATRGDGTIGEDITQNLRTIRSLPLRLRQNL--SVEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
            Y+ K  FLALN+E  A G++ + NPRNAA+G LR+L+P  +  R LN F++    T E 
Sbjct: 173 CYMPKAVFLALNEEREAQGQEIFKNPRNAAAGGLRQLDPRAVADRQLNIFLYSAVYTDEF 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q  +      LG   N   R+  T   ++ Y   +   R  LPY+IDG+V KV+  
Sbjct: 233 HPESQAGLFAAFEQLGLRTNPLRRECQTAEEVIDYIQMIGQQRHDLPYEIDGVVIKVNHI 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+ LG   ++PRW I++KF  ++A T L +++  +GRTG++TP A ++PV + G  + 
Sbjct: 293 DQQQALGFTVKAPRWAIAYKFPAEEAVTTLREVEWTVGRTGVVTPTAIMDPVPLAGTTVQ 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D I+ L           D+R+GD+V + +AG++IP++  +++ +R  D+QP +
Sbjct: 353 RASLHNVDLIESL-----------DVRIGDQVTIHKAGDIIPEITSVLLAKRPQDSQPLA 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP CQ+ +VR           A RC   L C AQ+L  L HFVSR A NI+GLG +
Sbjct: 402 IPTHCPECQTALVRQGEE------VALRCPN-LVCPAQRLALLSHFVSRGAMNIQGLGPR 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+    S+    ++    D++ L      S  KI+      + S   L  +I   ++ S
Sbjct: 455 ILNQLVASQ----AVTELDDLYRLSLEDLLSLDKIQ------EKSAQKLLAAIEASKSNS 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER +F LGIRHVGA+ AR + + +      +Q     I            +  VG II+
Sbjct: 505 AERLLFGLGIRHVGAKAARLVLQVFGDLNRLSQATAEEIGA----------IEGVGPIIS 554

Query: 610 QAIVEFYQNPRNICAVEA--------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           Q++V++     +   ++           +   P      +  +     K +V TGT++  
Sbjct: 555 QSLVQYLTLESSQAMLKRLAEAGVNLTYQGPQPLEVAQGETANDFWLGKTVVLTGTMESY 614

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            R +A+E +   GA V+  +S+KTD ++ G   GSKL KA+ LGV I++E  FL 
Sbjct: 615 SRSEAKELLEARGAKVTGSVSKKTDYLVAGQEAGSKLSKAESLGVTILDEASFLA 669


>gi|326574755|gb|EGE24691.1| NAD-dependent DNA ligase [Moraxella catarrhalis 101P30B1]
          Length = 691

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/711 (37%), Positives = 397/711 (55%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE+     +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|309389839|gb|ADO77719.1| DNA ligase, NAD-dependent [Halanaerobium praevalens DSM 2228]
          Length = 670

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/715 (32%), Positives = 390/715 (54%), Gaps = 48/715 (6%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            L+ E+A K++++L+++I  H+  Y+    P I D+E+D L +    +   FPDL     
Sbjct: 3   NLNKEKASKKITALKEKIRKHEYKYFVLDDPSISDAEFDQLMQELIKLESEFPDLITE-- 60

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG +     KV HS   LSL+  +N EDL +F  R+ +  +        + +
Sbjct: 61  -DSPTQRVGGAVLDEFKKVKHSTKMLSLDNAFNKEDLIEFDQRVQKNLK---GEDYQYVV 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG    +RY  G F   A RG+G  GED+S  ++ I ++P  L +     +++RGE
Sbjct: 117 EHKIDGLSAVMRYNNGTFELGATRGNGEVGEDISNNMKTIRSLP--LKIEEKAEMQLRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           +Y++K++F  LN + +     P+ANPRNAA+G +R+L+      R L+  ++ L   S+ 
Sbjct: 175 IYLAKSEFKRLNKQRLENDESPFANPRNAAAGSVRQLDSKIAAERSLSILIYDLISHSKR 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K   E+   ++  GF +N   + A+    ++    +    R  L ++IDGLV K+++ 
Sbjct: 235 EFKTHLEVFAYLKKQGFKIN-WYQAASNIESVIEICQDWHQKREKLDFEIDGLVIKINDL 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +L+K+LG  ARSPRW I++KF  +Q +T++ DI+I +GRTG LTP A L+PV + G+ ++
Sbjct: 294 ALRKKLGNTARSPRWAIAYKFPAQQKTTKIKDIEISLGRTGALTPTAILDPVELAGSTVS 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNED IK            +DI++GD VLV++AG+VIP+VV +I  +R    + F 
Sbjct: 354 RATLHNEDEIKR-----------KDIKIGDIVLVQKAGDVIPEVVKVITEKRDGSEKEFE 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C   V+R          A  RCT  ++C AQ+ E + HFVSR+A NI+G+G  
Sbjct: 403 MPKNCPVCGGEVIRPEGE------AVSRCTN-ISCPAQRKESILHFVSRNAMNIDGVGPA 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++    +      I   AD++ L++       ++      G+ S  N+  +I   +   
Sbjct: 456 LIEQLLANN----LIEDYADLYFLKQSHLKDLERM------GEKSSENVIKAIEASKKRE 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R +++LGIRHVG   AR LA+ + S       I+ + +   DD      +  +G +IA
Sbjct: 506 FFRVLYALGIRHVGIGAARILAENFNS-------IDELKSAKIDDL---KNISEIGPVIA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +IV F+Q   NI  +  L +       +  +   + ++  K VFTG+L    R + ++ 
Sbjct: 556 DSIVNFFQERHNIDLLSRLKQAGIRLKNKASQENENFLDQLKFVFTGSLNDFTRSEIKDL 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           V   G    + +S KTD +++GDNPGSK +KAQ LG++I+NE +F  ++++  ++
Sbjct: 616 VENAGGRAVSSVSSKTDYLVIGDNPGSKYDKAQSLGIEILNESEFKEMIKKKRSS 670


>gi|119487266|ref|ZP_01621017.1| DNA ligase [Lyngbya sp. PCC 8106]
 gi|119455821|gb|EAW36956.1| DNA ligase [Lyngbya sp. PCC 8106]
          Length = 685

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/711 (31%), Positives = 367/711 (51%), Gaps = 55/711 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L+ E  ++ +  L Q++      YY    PII D+ YD L R    +   +P L   
Sbjct: 1   MEQLTSE-IQQRVQKLSQQLHLASYAYYVLDAPIIEDAIYDQLYRELQQLETDYPQLI-- 57

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN---- 124
             P+ P  ++G +       V H+IP  SLE  +N E+L+ +  R  +  + +D      
Sbjct: 58  -TPDSPTQRVGEKPATQFTSVRHNIPLYSLENAFNTEELKAWDGRWKKVLKTEDKEINYS 116

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPE 183
              +  E KIDG+ + + YE G  V    RGDG +GE+++  ++ I +IP  L L + P 
Sbjct: 117 EPLYICELKIDGSALALTYENGILVRGTTRGDGVTGEEITQNVKTIRSIPLRLKLESPPS 176

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242
           I+EVRGE ++S N F  +N E        +ANPRNAA+G LR+L+   + +R L+FF + 
Sbjct: 177 IVEVRGEAFLSLNIFAKINQERQQKDESLFANPRNAAAGTLRQLDSRIVRSRQLDFFAYT 236

Query: 243 LG-KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           +  +  EI  K Q++ L+ ++ +GF VN   +  ++   + +Y+ +  S R  L Y  DG
Sbjct: 237 VHLEGEEINLKTQWDCLELLQEMGFKVNPNRQLCHSLTEVQNYFEDWDSRRQNLSYMTDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K++  SLQ+QLG   + PRW I+ K+  ++A T+LL + +Q+GRTG LTPVA LEP+
Sbjct: 297 VVVKINPLSLQEQLGFTQKFPRWAIALKYPAEEAPTKLLAVTVQVGRTGALTPVAELEPL 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  ATLHN D I  L           D+ +GD V+V++AGE+IP+VV  +   R
Sbjct: 357 QLAGTTVQRATLHNSDRIAEL-----------DLHIGDTVIVRKAGEIIPEVVRNLPELR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             +AQPF  P+ CP C   VV+          A  RC    +C A     L H+ SRDA 
Sbjct: 406 PTNAQPFQMPTHCPECGQAVVKPQTE------AVTRCINT-SCPAILRGSLIHWCSRDAV 458

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I G+G++ +    + +     I   AD++ L         K+  +   G+ S T + ++
Sbjct: 459 DINGVGEKLVQQLVERK----LISSVADLYELT------VEKLTQLERIGEKSATKIVNA 508

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + + +     R ++ LGIRHVG+  A  L + +L+ +  A      I            V
Sbjct: 509 VTESKTQPWARVLYGLGIRHVGSVNAELLTQKFLTVEQLADSTPADIEG----------V 558

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS------SEIENKKLVFT 655
             +G  IA ++ E+++ P N   +E L ++      +     S        +  K  V T
Sbjct: 559 YGIGTEIAFSVEEWFKVPANQALIERLKQQGLNLASQPSPESSLSQKQDLNLSGKTFVLT 618

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           GTL  ++R +A++ +   G  V+  +S KTD ++VG++ GSKL+KAQ+L +
Sbjct: 619 GTLPNLKRDEAKKLIQNAGGKVTGSVSSKTDYVVVGEDAGSKLKKAQELEI 669


>gi|227523032|ref|ZP_03953081.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290]
 gi|227089850|gb|EEI25162.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290]
          Length = 675

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/713 (33%), Positives = 372/713 (52%), Gaps = 53/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ +QA      L ++++   D YY Y  P + DS YD   ++   +   FP +    
Sbjct: 4   EDMTEQQAESAARELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  K+G        KV H IP LSL  +++IE+L+ F  R        +     + 
Sbjct: 61  TPDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADR----LSDSESVPFEYN 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G  V  A RG+G  GED++  ++ I +IP+ LS   P  IEVRG
Sbjct: 117 CELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIPQRLS--RPINIEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ LN +    G  P+ANPRNAA+G LR+L+      R L+ F++ +    +
Sbjct: 175 ECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNVANYDD 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +  Q  ML++++ LGF +N+  + A+    I  Y       R TL Y IDG+V KV+ 
Sbjct: 235 LESDTQSGMLEELKKLGFTINSDYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIVIKVNS 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ+ LG   + PRW I++KF  ++A T + DI+  +GRTG++TP A ++ V + G  +
Sbjct: 295 LPLQRSLGATVKVPRWAIAYKFPPEEAETTVRDIEWTVGRTGVVTPTAVMDEVTLAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            +DIR+GD V + +AG++IP++   + ++R  D+QP+
Sbjct: 355 SRASLHNPDYLQ-----------EKDIRIGDTVRLHKAGDIIPEISTYVKDKRQVDSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S +V            A RC     C AQ  E L HF SRDA NI+GLG 
Sbjct: 404 EIPTECPSCGSELVHLDEE------VALRCINP-QCPAQLKEGLTHFASRDAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   FK       +   A ++ L   Q  +  K      FG+ S  NL  +I+  RN 
Sbjct: 457 KIIGQLFKKHM----LTDVAGLYGLTFDQLMTLDK------FGEKSAGNLLAAIDNSRNN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S ER +F LGIRHVGA+ AR +A+ + +           IA           +  +G II
Sbjct: 507 SCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDATAQEIA----------EIDTMGMII 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           A ++V ++  P++   +  L +               K   S    K+LV TG LQ I R
Sbjct: 557 ADSVVTYFSMPQSKELISQLKQVGVNMDYLGATDEALKESDSVFNGKRLVLTGKLQHITR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +A  ++   GA VS  +S+KTDI++VG++PGSK +KA+ LG+ + +E +F  
Sbjct: 617 PEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIDVWDENRFAE 669


>gi|320160951|ref|YP_004174175.1| DNA ligase [Anaerolinea thermophila UNI-1]
 gi|319994804|dbj|BAJ63575.1| DNA ligase [Anaerolinea thermophila UNI-1]
          Length = 674

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/717 (35%), Positives = 380/717 (52%), Gaps = 51/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +   +E  +L+++I YHD  YY    P+I D+EYD L  R   I  A P+      P
Sbjct: 1   MSQDPLYQEYENLKKQIHYHDYRYYVLDDPVISDAEYDRLILRLKQIEFAHPEWI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       KV H  P LSL   +   D+  +I RI +   +       F LE
Sbjct: 58  DSPSQRVGGMPQDKFNKVRHPSPILSLANGFEKSDVLAWIERIRKLDARVATAD--FVLE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIE 186
           PKIDG  + + Y+ G FV  A RGDG  GED++A +R I ++P V+ +      +PE + 
Sbjct: 116 PKIDGLTVVLTYQNGVFVQGATRGDGEVGEDITANLRTIRSLPLVIPVEQNNVPVPEWVV 175

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGE ++   DF  LN  +   G K Y NPRN A+G LR+L+P+   +R +N FV+ +  
Sbjct: 176 VRGEAFMFIKDFEELNKRLEQSGEKTYLNPRNTAAGSLRQLDPSLTASRPINIFVYAIVA 235

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           +S    + Q+E LQ ++  GFPV + V+   +   ++   ++ +  R TLPY+ DG+V K
Sbjct: 236 SSAPLPQTQWEQLQTLKAWGFPVASDVQYCASVEEVLKGLDQWREKRDTLPYEADGVVIK 295

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +++  L   LG   + PR  ++ KF  ++ STRLLDI + +GRTG+LTP A LEPV IGG
Sbjct: 296 INDLELASSLGYVGKDPRGALAFKFPAREISTRLLDIGVNVGRTGVLTPYAILEPVEIGG 355

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++  ATLHN D+I+            +DIR+GDRV+VKRAG+VIP V+  IV  R  D 
Sbjct: 356 VIVKQATLHNFDFIR-----------EKDIRIGDRVMVKRAGDVIPYVIGPIVELRTGDE 404

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P  CP C   V             A  C   + C AQ +  ++HFVSR A +I G
Sbjct: 405 RVFIPPEMCPACGQPVSHVEGE------VAWYCLN-VTCPAQIIRNVEHFVSRGAMDIVG 457

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++   +       ++ PAD++ L +    +        GF D    N+  +I   
Sbjct: 458 LGIKIVEQLVEK----GFVQSPADLYFLSKEDLLTLE------GFADKKAENILQAIQNS 507

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R+  L R I +LGIR VG  +A  LAK++ +    ++               L+ +  VG
Sbjct: 508 RSRPLSRLITALGIRGVGEVMAGELAKHFKNLDALSKAT----------VQQLMEIEGVG 557

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQR 663
             IAQ+IVE++ +  N   +  L +       +   E   S  +     V TGTL++  R
Sbjct: 558 PNIAQSIVEWFTHSGNQEFLRKLREAGVWPTEQTPVESVESLPLAGLTFVVTGTLKEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              + Y+ +LGA V+  +SR T  ++VG+NPGSKLEKA+QLGV+I+ EE+   L+ +
Sbjct: 618 EGIKGYLERLGAKVTDSVSRNTSYLLVGENPGSKLEKARQLGVRIITEEELKQLVSK 674


>gi|312888786|ref|ZP_07748349.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603]
 gi|311298661|gb|EFQ75767.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603]
          Length = 675

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/712 (29%), Positives = 378/712 (53%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  +A+ ++ +L  E+  H+  YY  + P I D ++D       A+   FP+ A   +P
Sbjct: 1   MSPTEAKNKIHTLSAELKQHNYNYYVLAMPTISDFDFDKKLEELAALEKQFPEFA---EP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE+      V H  P +SL   ++ ++L+ F  R+ +       +   +  E
Sbjct: 58  DSPTQQVGGEITKEFETVRHKWPMMSLGNTYSEQELQDFDQRVRKAIG----DDFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
            K DG  +++ YE+GK + A  RGDG  G+DV+A ++ I TIP+ L   N P+  E+RGE
Sbjct: 114 LKFDGLSMSLTYEQGKLIRAVTRGDGIQGDDVTANVKTIHTIPKKLDEGNYPDHFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEI 249
           V++ +  F  LN+E I     PYANPRN ASG ++  +  ++ R  L+ F++ L  T + 
Sbjct: 174 VFMHRKAFDRLNNERIEQNEMPYANPRNFASGTIKLQDSREVARRPLDCFLYFL-YTDKP 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K  ++ +  ++  GF V    +       +  +       R  L YDIDG+V KV+ +
Sbjct: 233 VFKTHWDSIMAVKSWGFHVCEHTKLCKNIDEVFEFIASWNEKRFDLSYDIDGIVLKVNSY 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q++LG  A+SPRW I++K+  +QA T L  +  Q+GRTG +TPVA L+PV + G  + 
Sbjct: 293 AQQQELGFTAKSPRWAIAYKYKAQQAETVLESVSYQVGRTGSVTPVANLKPVVLAGTTVK 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN + I  L           D+  GD V V++ GE+IPK++ +   +R PDA P +
Sbjct: 353 RASLHNANEILRL-----------DLHEGDSVFVEKGGEIIPKIISVNPLKRKPDAAPIA 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           + + CP C + +VR          A H C     C  Q + +++HF+ R A NI+GLG +
Sbjct: 402 YITHCPECGTELVRQEGE------ANHYCPNDEGCPPQIVGKMQHFIGRKAMNIDGLGDE 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++  ++       +R  +DI+ L       + +++ +  FG+ S+ N+ + I K + + 
Sbjct: 456 TIETLYQK----GFLRHISDIYDL----HLRSDELKQLGRFGEKSINNMMEGIEKSKQMP 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            E+ +F +GIR+VG  +AR L  Y+ +  N  +           +   L  V  +G  IA
Sbjct: 508 FEKVLFGMGIRYVGETVARKLVAYFKNIDNLMKA----------NIEELTTVDEIGTRIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQ 667
           +++V+++ +P ++  VE L  +    +   ++ V  S ++  K  + +G  +K  R + +
Sbjct: 558 ESLVDYWSSPEHVQQVEKLKAQGLQFVSNEKELVLASDKLSGKTFIISGVFEKYSRDELK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + + Q G  + + +S K + ++ GDN G +KLEKA +L + I+++++ L +L
Sbjct: 618 DIIEQNGGKILSSISAKLNYLVAGDNMGPAKLEKANKLNIPIISDDELLTML 669


>gi|315641089|ref|ZP_07896168.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952]
 gi|315483097|gb|EFU73614.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952]
          Length = 671

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/711 (31%), Positives = 372/711 (52%), Gaps = 53/711 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +   +++  L+++++ +   YY   +P++ D+ YD L ++  A+  A P+   S   + P
Sbjct: 3   QTVAEQIHDLQKKLTEYAYAYYVKDQPVVDDAYYDQLYQQLVALETAHPEYQTS---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +     KV H IP  SL  +++  ++  F  R+ +       +++ +  E KI
Sbjct: 60  TQRVGGVVRKGFEKVVHEIPLYSLNDVFSKAEIIAFDQRVQKTLG----HAVSYICELKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I+++YE G+ V  A RGDG  GE+++   + + +IP  L+   P  IEVRGE Y+ 
Sbjct: 116 DGLSISLKYENGRLVRGATRGDGTIGENITDNSKTVKSIPLTLTE--PIDIEVRGECYMP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F+ LN +    G   +ANPRNAA+G +R+L+     +R L+ F++ L     +    
Sbjct: 174 KASFIQLNQKREEEGLDIFANPRNAAAGSIRQLDSKVTASRNLSTFLYTLADFGPLHVTN 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q E L  +  LGF  N      +T   + +Y       RS LPY+IDG+V KV++FS Q 
Sbjct: 234 QAEALTHLDDLGFRTNQERAVCSTIDDVWAYIESFHDKRSQLPYEIDGVVIKVNDFSDQN 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG   ++PRW +++KF  ++A T + +I+  +GRTG++TP A + PV + G  +  A+L
Sbjct: 294 QLGFTVKAPRWAVAYKFPPEEAQTTIEEIEWTVGRTGVVTPTAVMTPVRVAGTTVARASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN DYIK            +DIR+ D+V++ +AG++IP+V  +I   R   +QP++ P+ 
Sbjct: 354 HNADYIKM-----------KDIRLHDQVVIYKAGDIIPEVAHVIEEARDSASQPYTIPTN 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S +V            A RC     C A   E + HFVSRDA NIEG+G + ++ 
Sbjct: 403 CPVCGSELVHLDEE------VALRCINP-KCPALLKEGISHFVSRDAMNIEGIGPRMIEQ 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           FF        +   AD++ L   Q  +  K++      + S TN+  +I   +  SLE+ 
Sbjct: 456 FFNH----GFVEDVADLYRLTLDQLLTIDKVK------EKSATNMLQAIEASKQNSLEKL 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIRHVG + A+ LA+ + +    +Q               ++ V  +G  IA ++V
Sbjct: 506 LFGLGIRHVGVKAAKLLAERFETLTQLSQAT----------VEEILTVATIGPTIADSLV 555

Query: 614 EFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ N      +  L              +    + S  + K +V TG LQ   R +A++
Sbjct: 556 TYFANEEVHELMTELKAAGVNETYLGLKSQDVAEIESAFQGKTVVLTGKLQTYTRDQAKK 615

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + +LG  ++  +S+KTD++I G + GSKL KAQ L + +  EE+ +  L+
Sbjct: 616 RIEELGGTITGSVSKKTDLVIAGADAGSKLTKAQALDIPVWTEEEMIAALE 666


>gi|315498681|ref|YP_004087485.1| DNA ligase, nad-dependent [Asticcacaulis excentricus CB 48]
 gi|315416693|gb|ADU13334.1| DNA ligase, NAD-dependent [Asticcacaulis excentricus CB 48]
          Length = 697

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/708 (40%), Positives = 407/708 (57%), Gaps = 22/708 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            + A+   + L  EI +H D YY    P + D+EYDAL++   A+   +PDL      + 
Sbjct: 6   PDTAQTRHAQLSTEIKHHRDLYYNQEAPELTDAEYDALEQELRALEAQYPDL---HTVDS 62

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E++     V H +P LSL+  +  ED+  F   I RF +   +  + F +EPK
Sbjct: 63  PTEQVGAEISSKFAPVQHGVPMLSLDNAFAPEDVADFEKSIRRFLRLPPEEELAFAVEPK 122

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           IDG   ++ Y  GK V AA RGDG +GED++  +R I  +P VLS  + PE IE+RGEVY
Sbjct: 123 IDGLSCSLLYVNGKLVRAATRGDGRTGEDITENVRTIKDVPHVLSGRDHPERIEIRGEVY 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-F 250
               DF A+N +    G K +ANPRNAASG LR+L+ T   +R L FF +  G+ S+  F
Sbjct: 183 YPLADFAAMNAKSAEEGGKVFANPRNAASGALRQLDATITASRPLRFFAYTWGEVSDPRF 242

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E L K    GF VN          G++  Y  ++  RS+L YDIDG+VYKVD   
Sbjct: 243 VTTQTEALAKFHEWGFQVNPRSATTENSDGLLKIYEAIQRDRSSLGYDIDGVVYKVDRLD 302

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +RSPRW I+HKF  +QA T L  IDIQ+GR G LTPVARLEPVN+GG +++N
Sbjct: 303 YQRRLGFVSRSPRWAIAHKFPAEQALTHLKAIDIQVGRIGTLTPVARLEPVNVGGVVVSN 362

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN D I             +DIR+GD V V+RAG+VIP++V + ++ER    +P+ F
Sbjct: 363 VTLHNADEIAR-----------KDIRIGDLVRVQRAGDVIPQIVGVELSERQEGTEPYVF 411

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP      V       G+   A RC+G  AC  Q++E LK+ VSR   +IEGLG++Q
Sbjct: 412 PTVCPCPLKTAVARELNLKGEEGVARRCSGEHACPHQRVEYLKYVVSRKVLDIEGLGEKQ 471

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L  F +       IR PADIFTL+ R +TS T + N  G G+ S  NL+ +I  RR + L
Sbjct: 472 LQKFSEE----GLIREPADIFTLEARDKTSLTPLRNREGMGETSARNLFKAIEDRRQLPL 527

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFI +LG++ VG   AR LA+ Y S   F   +  + A + +   +L  +  VG  +  
Sbjct: 528 DRFIAALGVKGVGETTARLLARAYHSESTFRDAMIALAAGDEEVKAALDNMDQVGPSLVA 587

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           A++EF+ N  N+      + ++S           S +  K +VFTGTL+K+ R +A+   
Sbjct: 588 ALIEFFSNDHNVGIYMRFVAQLSVQ-DAEAVAGDSAVSGKTVVFTGTLEKMTRDEAKAQA 646

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +LGA V+  +S KT I++ G   GSKL+KA +LGV++M E+++L  +
Sbjct: 647 ERLGAKVAGSVSAKTHIVVAGPGAGSKLKKAAELGVQVMTEDEWLAFI 694


>gi|161598439|ref|YP_120478.2| NAD-dependent DNA ligase LigA [Nocardia farcinica IFM 10152]
          Length = 710

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/719 (31%), Positives = 363/719 (50%), Gaps = 42/719 (5%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R     L +E+  H   YY    PII D E+DAL R    +    PDL     P+ P   
Sbjct: 27  RVRWQRLAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDL---RTPDSPTQL 83

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG        V H    LSL+ ++++++LR +  R+    + +    + +  E KIDG 
Sbjct: 84  VGGGFATDFTPVDHLERMLSLDNVFDVDELRAWAARV----EAETGPDLHYLCEVKIDGV 139

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193
            + + YE+GK V AA RGDG +GEDV+   R I  +P  LS      +PE++EVRGEVY+
Sbjct: 140 ALNLVYERGKLVRAATRGDGRTGEDVTLNARTIEDVPGELSAGGEFPVPELLEVRGEVYL 199

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAK 252
              DF ALN  ++A G+ PYANPRN A+G LR+ +P    R  L    HGLG+       
Sbjct: 200 RLADFEALNAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICHGLGRIEGYTPA 259

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q+E  + +   G PV+   R+      ++         R  + ++IDG V KVDE SLQ
Sbjct: 260 SQFEAYRALSAWGLPVSEHTRRVRGIDAVIERVAYWGEHRHDIEHEIDGQVIKVDETSLQ 319

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I++K+  ++A+T+L  I++ +GRTG +TP A +EPV I G+ +  AT
Sbjct: 320 RRLGATSRAPRWAIAYKYPPEEATTKLRAIEVNVGRTGRVTPFAVMEPVVIAGSTVAMAT 379

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   +K            + + +GD V +++AG+VIP+V+  +V+ R    + F  P+
Sbjct: 380 LHNASEVKR-----------KGVLIGDTVTIRKAGDVIPEVLGPVVDARTGAEREFVMPT 428

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +         +  A  RC    +C AQ  ER+ H   R AF+IE LG +   
Sbjct: 429 HCPECGTEL-----APEKEGDADIRCPNQRSCPAQLRERVYHVAGRSAFDIEALGYEAAI 483

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +S     +I    D+F L   +  +T+   N  G    +   L ++++  ++  L R
Sbjct: 484 DLLQS----GAIGDEGDLFDLDEARLLTTSLFTNKNGSLSANGKRLLENLDAAKDRPLWR 539

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +  L IRHVG   AR+LA  + S +   Q   + +A              VG  IA A+
Sbjct: 540 VLVGLSIRHVGPTAARALAAEFGSMERIEQASVDELAAT----------DGVGPTIAAAV 589

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            E++    +   V          +   ++++   +E   +V TG+LQ   R  A+E +  
Sbjct: 590 AEWFTVDWHRAIVAKWRAAGVRMVDERDESIERTLEGLSIVVTGSLQGFSRDGAKEAILA 649

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
            G   +  +S+KT  ++VGD PG+K  KA++LGV I++EE F+ LL +    +   + +
Sbjct: 650 RGGKAAGSVSKKTAFVVVGDAPGAKAAKAEELGVPILDEEGFVRLLAEGPAAVAAEEPE 708


>gi|296113927|ref|YP_003627865.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
 gi|295921621|gb|ADG61972.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
          Length = 691

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/711 (37%), Positives = 396/711 (55%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE+     +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L ++ +   T    + G GD SV  +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHKQAEYLIT----LEGMGDKSVAKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|269127766|ref|YP_003301136.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183]
 gi|268312724|gb|ACY99098.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183]
          Length = 722

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/742 (30%), Positives = 353/742 (47%), Gaps = 62/742 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +  +A +  + L +EI   +  YY   +P + D+EYD L R    +    P+L     P+
Sbjct: 7   TPTEAARRHAELSREIDEANYRYYVLDRPTLSDAEYDRLMRELRELEERHPELV---TPD 63

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G  +      V H    LSL+     E+L  +  R+ +   ++      +  E 
Sbjct: 64  SPTQRVGAPIVTDFATVQHLERMLSLDNAMTGEELAAWGERVLKEVGEQA----SYLCEL 119

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           KIDG  + + Y  G+ V  A RGDG +GEDV+  IR I  +P  L     P ++EVRGEV
Sbjct: 120 KIDGLAVALVYRDGRLVRGATRGDGRTGEDVTNNIRTIDVVPDRLSGEGWPSLLEVRGEV 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSE-I 249
           +++   F  +N  M+  GR+P+ANPRNAA+G LR+ +P    R  L+  VHG G      
Sbjct: 180 FLTVASFEQINAAMVDAGREPFANPRNAAAGSLRQKDPRITARRPLSMLVHGFGAWEGRE 239

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q E  + MR  G PV++  +      G+  Y       R   PY+IDG+V KVD+ 
Sbjct: 240 LPRSQSEAYELMRSWGLPVSDLYKVVPDLEGVREYVAHYGEHRHDPPYEIDGVVVKVDQL 299

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+++G  +R+PRW I+ K+  ++ +T+LLDI + +GRTG +TP   +EPV + G+ + 
Sbjct: 300 ALQRRMGSTSRAPRWAIAFKYPPEEVNTKLLDIKVGVGRTGRITPYGVMEPVKVAGSTVA 359

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +             + + +GD V++++AG+VIP++V  +   R    +PF 
Sbjct: 360 YATLHNAGEVAR-----------KGVLIGDTVVLRKAGDVIPEIVKPVTELRDGSERPFH 408

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C +R+         +  A  RC     C  Q  ERL    SR+A +IE LG  
Sbjct: 409 MPETCPECGTRL-----AYEKEGDADIRCPNARYCPGQLRERLFFAASRNALDIEALGYV 463

Query: 490 QLDFFFKSEDPAF-SIRIPADIFTLQRRQQ-----------TSTTK-------------I 524
                 +  +P+   +R   D+F L+  Q            T   K              
Sbjct: 464 AATALTQPLEPSDPPVRNEGDLFHLKVEQLLPIRTVVRDPRTGLPKIDPKTGEQKVVSFF 523

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
               G    +V  L+  + K +   L R + +L IRHVG   AR+LA+ + S     +  
Sbjct: 524 ATKDGRPKKTVEVLFAELEKAKTRPLWRVLVALSIRHVGPTAARALAREFGSIDAIMKAS 583

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +A           V  VG  IA +I  ++    +   +E   +     +     +  
Sbjct: 584 EEELAA----------VDGVGPAIAASIKRWFAEDWHREIIEK-WRAAGVRMADEGADGP 632

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +    +V TGTL+   R  A E V   G  V+  +S+KT+ ++VGDNPGSK +KA +L
Sbjct: 633 RPLSGVAVVITGTLEHYSRDSATEAVLSRGGRVTGSVSKKTNFVVVGDNPGSKYDKAVKL 692

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
           GV +++E+ F  LL+Q     +
Sbjct: 693 GVPVLDEDGFRVLLEQGPEAAK 714


>gi|78214056|ref|YP_382835.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9605]
 gi|123729638|sp|Q3AGK2|DNLJ_SYNSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78198515|gb|ABB36280.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9605]
          Length = 680

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/717 (30%), Positives = 352/717 (49%), Gaps = 49/717 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    +  + L   ++     YY    P + D+ YD L R    +    P L R   P+ 
Sbjct: 1   MADPHERAAELRHLLNRAGHAYYVLDAPEMEDTVYDRLYRELLELEQNDPGLQR---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H +  LSL+  +N +DLR +  R+ +   +  D+ +    E K
Sbjct: 58  PTQRVGGAPAEGFTSVEHRVGMLSLDNAFNRDDLRAWHERLLKVLDRPSDSRLPLVGELK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           IDG  + + Y  G    AA RGDG  GE+++A +R I +IP  L + N PE +EVRGE +
Sbjct: 118 IDGNALALSYRNGVLERAATRGDGSRGEEITANVRTISSIPLRLQIENPPEWVEVRGEAF 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           I    F A+N E        +ANPRNA +G LR+L+P  +  R L+FF + L    +   
Sbjct: 178 IPDATFAAINAEREQRDEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPGDAQP 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            GQ+  L+ +   GF VN           I  + +  +  R  LPY  DG+V K+D+  L
Sbjct: 238 PGQWAALEWLNSAGFRVNPNRELCGDLAAIQRFCDHWEQGRHDLPYATDGVVVKLDDLQL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q + G   ++PRW ++ K+  ++A TRLL +  Q+GRTG +TPVA  E V + G  ++ A
Sbjct: 298 QDEAGFTQKAPRWAVALKYPAEEAPTRLLRVGAQVGRTGAITPVAEFEAVPLAGTSVSRA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           D+ +GD ++V++AGE+IP+VV ++   R  DA P   P
Sbjct: 358 TLHNADRIAEL-----------DLHLGDTIVVRKAGEIIPEVVRVLPELRPSDATPVQLP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S +VR+ +       AA RC    +C A     L+H+VS+ A +++GLG + +
Sbjct: 407 QQCPECGSNLVREGDE------AATRCVNS-SCPAILRGGLRHWVSKGALDVDGLGSKLI 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           +   AD++ L      S  ++      GD S TNL +++   +     
Sbjct: 460 EQLVDR----GLVGSLADLYRLDAALLASLDRM------GDKSATNLVEALKASKQQPWH 509

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRH+G   A++LA  + S       I+++     +    +  +  +G  I+ +
Sbjct: 510 RQLYGLGIRHIGEVNAKALAAAFFS-------IDSLATAALEAPEQIAELHGIGPEISAS 562

Query: 612 IVEFYQNPRNICAVEALLKEV---------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           + ++   P N   ++ L               +  +   +    ++ K LV TGTL  + 
Sbjct: 563 LGQWLHTPANQQLLQDLRSVGFSLEASTSEQEAASQAGADADGVLQGKTLVLTGTLPNLS 622

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+  +   G  VS  +S+KTD ++ G+  GSKL KA+ LGV +++E     LLQ
Sbjct: 623 RSEAKALIETAGGKVSGSVSKKTDYLVAGEAAGSKLTKAESLGVTVLSEADLTALLQ 679


>gi|255021565|ref|ZP_05293608.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
 gi|254968953|gb|EET26472.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
          Length = 659

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/700 (34%), Positives = 385/700 (55%), Gaps = 45/700 (6%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +   +  YY+   P++ D+EYDAL R   A+  A P+L  +   + P  ++G     +  
Sbjct: 3   LEAANRAYYRDDAPVMSDAEYDALLRELRALEDAHPELRVA---DSPTQRVGAAPVSAFG 59

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            V + IP  SL+ +++ E+ R +  R+ R   +  +  +    EPK DG  + +RYE G+
Sbjct: 60  AVHYRIPMTSLDNVFSEEEFRDWWERLRRALPEVSNPVLSG--EPKFDGLSVNLRYEGGR 117

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMI 206
            V A  RGDG  GEDV+  +R I  +P  L     PE+IE+RGEV +    F  LN E  
Sbjct: 118 LVRAGTRGDGVEGEDVTHNVRTIHNVPLQLQGSGWPELIELRGEVVLPVAAFRRLNRERE 177

Query: 207 AVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
             G  P+ANPRNAA+G LR+L+P    R  L FF  G G+ SE        +LQ+    G
Sbjct: 178 RRGEAPFANPRNAAAGSLRQLDPRITARRPLAFFPWGFGECSEPLGDSHVHILQRFATWG 237

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
           F V   +R  +     ++Y+ ++ + R ++P++IDGLV+KVD+ +L+++LG  AR+PRW 
Sbjct: 238 FSVTEFLRPIHGLDEALAYHADLAARRESMPFEIDGLVFKVDDLALRERLGFTARAPRWA 297

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I+ KF   +AST + DI   +GRTG++TPVA+L+PV++ G +++ A+LHNED ++     
Sbjct: 298 IAWKFPAHEASTLVEDIVASVGRTGVVTPVAQLQPVSVAGVMVSRASLHNEDEVRR---- 353

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  +D+RVGD VLV+RAG+VIP++V ++ + R   +QP+  P+ CP+C S ++R  
Sbjct: 354 -------KDVRVGDTVLVRRAGDVIPEIVTVLRDRRPAASQPWRMPTRCPVCGSEILRLP 406

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
           N        AHRCTGGL C AQ++  + HF SR A +I GLG++ +            ++
Sbjct: 407 NE------VAHRCTGGLYCPAQRMGAILHFASRRAMDIRGLGEKLVAQLVAQ----GLVK 456

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
             AD++ L R    +          GD S   L D I   R     RF+++LGI  VG  
Sbjct: 457 TVADLYHLDRDTLLAL------PRMGDRSAQKLLDEIAGSRQTEFARFLYALGIHQVGES 510

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A++LA+++        ++  ++A + +D      VP VG ++A+AI+ F+    N   +
Sbjct: 511 TAKALAQHFG-------DLETLMAVSAEDLQE---VPDVGPVVAEAILHFFAQTHNREVI 560

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +AL         +  K     ++ K+LV TG+L  + R  A+E +   G  V + +S + 
Sbjct: 561 QAL-LAAGVHWPKVRKREGGVLQGKRLVLTGSLPHLSREAAKEKIEAAGGKVVSAVSAQV 619

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           D +IVG+ PGSKL KAQ LG+  ++E  FL LL +    +
Sbjct: 620 DYVIVGEAPGSKLAKAQALGIPQLDEAAFLALLAEGGEDV 659


>gi|326562480|gb|EGE12798.1| NAD-dependent DNA ligase [Moraxella catarrhalis 46P47B1]
 gi|326567201|gb|EGE17321.1| NAD-dependent DNA ligase [Moraxella catarrhalis 12P80B1]
 gi|326568292|gb|EGE18374.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC8]
          Length = 691

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/711 (37%), Positives = 396/711 (55%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMCALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|170079241|ref|YP_001735879.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002]
 gi|254781436|sp|B1XLV0|DNLJ_SYNP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169886910|gb|ACB00624.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002]
          Length = 678

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/699 (32%), Positives = 355/699 (50%), Gaps = 53/699 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            L+ L  ++      YY    P + D+ YD L R   A+  A P L     P+ P  +IG
Sbjct: 8   RLAQLRSQLQKAAYAYYVLDAPFMEDAVYDQLYRELVALETAHPQLI---TPDSPTQRIG 64

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +       V H+IP  SLE  ++  +L ++  R  R    +  +   +  E KIDG+ I
Sbjct: 65  DQPATQFTSVKHNIPLYSLENAFDFGELTQWEQRWQRALAGEIPSDSGYVCELKIDGSAI 124

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
            + YE G  V  A RGDG +GE+++  +R I TIP  L+L N P ++EVRGE ++    F
Sbjct: 125 ALTYENGILVRGATRGDGVTGEEITQNLRTIRTIPLRLNLDNPPPLVEVRGEAFLPLETF 184

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE---IFAKGQ 254
             +N E    G   +ANPRNAA+G LR+L+   +  R L+FF + L             Q
Sbjct: 185 EKINQEREKAGENLFANPRNAAAGTLRQLDSRIVAARKLDFFAYTLHLPESHNSPQLNSQ 244

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L+ ++ +GF VN           + +Y+ +    R  LPY  DG+V K+++FSLQ +
Sbjct: 245 WEALEFLKKMGFRVNPNRELCPNLTAVKNYFEKWDEGRKKLPYLTDGVVVKLNDFSLQAE 304

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   + PRW I+ K+A ++A T + DI + +GRTG +TP+A +EPV + G  +  ATLH
Sbjct: 305 LGFTQKFPRWAIALKYAAEEAPTTVKDIIVNVGRTGAVTPMAVMEPVQLAGTTVQRATLH 364

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED IK L           D+R+GD V++++AGE+IP+V+ ++V+ R     P+ FPS C
Sbjct: 365 NEDRIKEL-----------DLRIGDTVVIRKAGEIIPEVLRVLVDLRPEATIPYEFPSHC 413

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S +VR          A  RC    +C A     L H+  RDA +I+GLG++ +   
Sbjct: 414 PECNSALVRPPGE------AVARCVNS-SCPAILRGSLVHWAGRDALDIQGLGEKNVILL 466

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       ++  ADI+ L   Q  S          G  S  NL  +I   +N    R +
Sbjct: 467 IEH----GLVQSIADIYDLTSEQLQSL------PRMGQKSAANLIQAIAHSKNQDYARVL 516

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIR VG   A  LA+ + + +   +            +  L  V  +G+ IAQ++V+
Sbjct: 517 YGLGIRFVGKVNAEILAQNFPTLEQLQKA----------SFAQLQGVYGIGEEIAQSVVD 566

Query: 615 FYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +++   N   +E L +         +      +   + +I  K  V TGTL  ++R +A 
Sbjct: 567 WFRVDANQQLIEKLQQAGLTFAQTQTAQTQTAQTQANHQISGKTFVITGTLPTLKRTEAA 626

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           E +   G  V++ +S+ TD ++ GDN GSKL+KA+QLG+
Sbjct: 627 EKIKAAGGKVTSSVSKNTDYLVAGDNAGSKLDKARQLGI 665


>gi|27468507|ref|NP_765144.1| DNA ligase [Staphylococcus epidermidis ATCC 12228]
 gi|81843559|sp|Q8CRU0|DNLJ_STAES RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|27316054|gb|AAO05188.1|AE016749_134 DNA ligase [Staphylococcus epidermidis ATCC 12228]
          Length = 665

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/708 (34%), Positives = 382/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+   +   + 
Sbjct: 1   MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKST---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI     K     + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++      G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   + +          I +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTESEL----------IEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E      +      I   E     +   K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V++ +++ TDI+I G + GSKL KA++ G +I  E  F+ 
Sbjct: 613 WLKMQGAKVTSSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660


>gi|227512904|ref|ZP_03942953.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577]
 gi|227083904|gb|EEI19216.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577]
          Length = 675

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/713 (33%), Positives = 372/713 (52%), Gaps = 53/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ +QA      L ++++   D YY Y  P + DS YD   ++   +   FP +    
Sbjct: 4   EDMTEQQAESAARELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  K+G        KV H IP LSL  +++IE+L+ F  R        +     + 
Sbjct: 61  TPDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADR----LSDSESVPFEYN 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G  V  A RG+G  GED++  ++ I +IP+ LS   P  IEVRG
Sbjct: 117 CELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIPQRLS--RPINIEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ LN +    G  P+ANPRNAA+G LR+L+      R L+ F++ +    +
Sbjct: 175 ECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNVANYDD 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +  Q  ML++++ LGF +N+  + A+    I  Y       R TL Y IDG+V KV+ 
Sbjct: 235 LESDTQSGMLEELKKLGFTINSDYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIVIKVNS 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ+ LG   + PRW I++KF  ++A T + DI+  +GRTG++TP A ++ V + G  +
Sbjct: 295 LPLQRSLGATVKVPRWAIAYKFPPEEAETTVRDIEWTVGRTGVVTPTAVMDEVTLAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            +DIR+GD V + +AG++IP++   + ++R  D+QP+
Sbjct: 355 SRASLHNPDYLQ-----------EKDIRIGDTVRLHKAGDIIPEISTYVKDKRQVDSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S +V            A RC     C AQ  E L HF SRDA NI+GLG 
Sbjct: 404 EIPTECPSCGSELVHLDEE------VALRCINP-QCPAQLKEGLTHFASRDAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   FK       +   A ++ L   Q  +  K      FG+ S  NL  +I+  RN 
Sbjct: 457 KIIGQLFKKHM----LTDVAGLYGLTFDQLMTLDK------FGEKSAGNLLTAIDNSRNN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S ER +F LGIRHVGA+ AR +A+ + +           IA           +  +G II
Sbjct: 507 SCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDATAQEIA----------EIDTMGMII 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           A ++V ++  P++   +  L +               K   S    K+LV TG LQ I R
Sbjct: 557 ADSVVTYFSMPQSKELISQLKQVGVNMDYLGATDEALKESDSVFNGKRLVLTGKLQHITR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +A  ++   GA VS  +S+KTDI++VG++PGSK +KA+ LG+ + +E +F  
Sbjct: 617 PEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIDVWDENRFAE 669


>gi|326572929|gb|EGE22914.1| NAD-dependent DNA ligase [Moraxella catarrhalis CO72]
          Length = 691

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/711 (37%), Positives = 397/711 (55%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF + +  + A +   I ++Y  +   RS LP++IDGLV KV++ SLQ
Sbjct: 255 TQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLSLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|326569993|gb|EGE20040.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC1]
          Length = 691

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/711 (37%), Positives = 397/711 (55%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF + +  + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|326559356|gb|EGE09783.1| NAD-dependent DNA ligase [Moraxella catarrhalis 7169]
          Length = 691

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/711 (37%), Positives = 397/711 (55%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF + +  + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|67920947|ref|ZP_00514466.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501]
 gi|67857064|gb|EAM52304.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501]
          Length = 670

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/699 (32%), Positives = 376/699 (53%), Gaps = 51/699 (7%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
             +  YY    PI+ D+ YD L R  D +      L  S   + P  ++G +       +
Sbjct: 15  KANYAYYVLDNPIMEDAVYDQLYRELDTLEKENTHLITS---DSPTQRVGDKPASQFVSL 71

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H+IP  SLE  +N+E+L+ +  R  R+ +K++  S  +  E KIDG+ + + YE G  +
Sbjct: 72  AHNIPLYSLENAFNLENLQAWQKRWQRYSEKENIESAEYVCELKIDGSALALTYENGLLI 131

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAV 208
               RGDG +GED++  +R I +IP  L+L N P IIEVRGE ++  ++F  +N +    
Sbjct: 132 RGVTRGDGTTGEDITQNVRTIRSIPLKLNLENPPPIIEVRGEAFLPLDEFDRINQQREEN 191

Query: 209 GRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
           G   +ANPRNAA+G LR+L+P  +  R L FF + L          Q+E L  ++  GF 
Sbjct: 192 GEALFANPRNAAAGTLRQLDPKIVDQRRLQFFAYTL-HLETTDINSQWESLNYLQNSGFL 250

Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
           VN   +   +   +  Y+ + ++ R  LPY  DG+V K++++SLQK LG   + PRW I+
Sbjct: 251 VNTHRKLCPSLEEVADYFQQWETERKDLPYMTDGVVVKINDYSLQKVLGFTQKFPRWAIA 310

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
            K+  ++A T + DI + +GRTG +TP+A +EPV++ G  +  ATLHN D IK L     
Sbjct: 311 LKYPAEEAPTIVKDIIVNVGRTGAVTPMAVMEPVHLAGTTVQKATLHNSDRIKQL----- 365

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                 DIRVGD V++++AGE+IP+VV ++ + R P+ Q +  PS CP C S + R  N 
Sbjct: 366 ------DIRVGDTVIIRKAGEIIPEVVRVLDDLRPPNTQLYQMPSHCPECDSTLKRPPNE 419

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC   L+C A     L H+ SRDA +I GLG++ +     +      +   
Sbjct: 420 ------AVTRCMN-LSCGAILRGSLVHWASRDALDIRGLGEKIVILLINN----GLVNSL 468

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
           AD++ L         KI N+   G  S  NL ++I   +     R ++ LGIR+VG+  A
Sbjct: 469 ADLYDLTP------EKIANLERMGSKSANNLIEAIEGSKKQPFSRVLYGLGIRYVGSVTA 522

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
             LA+ + S +  +Q            +  L  V  VG+ IAQ+I++++   +N   ++ 
Sbjct: 523 GLLAENFPSMEQLSQA----------SFSDLSSVYGVGEEIAQSIIDWFSIEKNCDLIQQ 572

Query: 628 LLKEVSPSIGRHEKNVS------SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           L ++V   +   +          +    K  V TGTL  ++R++A+  + + G  V++ +
Sbjct: 573 L-EKVGLQLEATKSKTPTVDSPLTPFAGKTFVITGTLPSLKRNEAKALIMEAGGKVTSSV 631

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S++TD +++G+NPGSKL +A++LG+  ++E +FL L+++
Sbjct: 632 SKRTDYLLLGENPGSKLTQAEKLGITQLSEAEFLTLVKK 670


>gi|326804258|ref|YP_004322076.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651204|gb|AEA01387.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a]
          Length = 677

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/712 (31%), Positives = 379/712 (53%), Gaps = 53/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  ++ +++L  +++ +   YY   +P + D  YD   R+ + +  + PDL +S   + P
Sbjct: 12  QAVQERMAALVDQLNQYAHEYYVLDQPSVSDDHYDKTYRQLEELEASHPDLIQS---DSP 68

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G  +N    KV    P LSL  +++ E+L  ++  + + +         F  E KI
Sbjct: 69  TQRVGDVLNEKFDKVHFDQPMLSLGDVFSQEELMAWVGGVQKEFG----QDTEFVCEMKI 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ Y+ G+ V  A RGDG++GE+++  I+ I +IP  L    P  +EVRGE+Y+ 
Sbjct: 125 DGLSVSLLYQDGRLVRGATRGDGNTGENITNNIKTISSIPLRLQE--PLSVEVRGEIYMP 182

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN++  A G   +ANPRN+A+G +R+L+P     R LN F++     ++     
Sbjct: 183 KASFAQLNEDREAAGLATFANPRNSAAGSVRQLDPKVTAKRNLNVFLYTGVLPADAGINS 242

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q E+L      G  VN   +  ++   I  Y  ++  IR  L YDIDG+V KV++F  Q+
Sbjct: 243 QAELLTSYPQWGLRVNPEFKLTHSKEEIWDYVEKVSQIRHDLAYDIDGIVIKVNDFDQQE 302

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG   ++PRW I++KF  +QA T + DI+  +GRTG++TP A ++PV + G+ +  A+L
Sbjct: 303 ELGYTVKAPRWAIAYKFPAEQAKTTIRDIEWTVGRTGVVTPTAVMDPVLVAGSTVQRASL 362

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+            +DIR+ D+V++ +AG++IP+VV +I  ER  D+Q +  P  
Sbjct: 363 HNMDLIRA-----------KDIRLNDKVIIHKAGDIIPEVVSVITEERDADSQAYPEPQT 411

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CPICQS +V   +        A RC    AC AQ  E+L HFVSR+A +I G+G   +  
Sbjct: 412 CPICQSDLVHLEDE------VALRCVNP-ACPAQAKEKLFHFVSRNAMDITGVGPAVITQ 464

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            +        ++ P+D++ L      +  K++      + S  N+  +I++ R  SLER 
Sbjct: 465 LYDKA----YVKDPSDLYQLDEATLLTLDKVK------EKSAQNILQAIDQSRENSLERL 514

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIRHVG + AR +A  + S +          A    D  ++  +  +G+IIA ++V
Sbjct: 515 LFGLGIRHVGVKAARDIAMTFGSME----------AIQTADREAISAIDGIGEIIADSVV 564

Query: 614 EFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           E++ N   I  V  L +            +   +V S  + K +V TG L    R +A+ 
Sbjct: 565 EYFANDEVIALVNRLSERGVNMTYLGSSPQAIASVDSFWQGKTVVLTGKLNHYSRQEAKS 624

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +   G  V+  +S+ TD+++ G++ GSKL KAQ L + I +EE+ L  L+ 
Sbjct: 625 LIEGQGGKVTGSVSKNTDVVVAGEDAGSKLTKAQDLDILIFDEEEMLSHLED 676


>gi|326564268|gb|EGE14498.1| NAD-dependent DNA ligase [Moraxella catarrhalis 103P14B1]
          Length = 691

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/711 (37%), Positives = 397/711 (55%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE+     +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN      R L FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAP-SKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +    +   G+ +A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L ++ +   T    + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++  VS          S  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|319399869|gb|EFV88116.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis FRI909]
          Length = 665

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/708 (34%), Positives = 381/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+   +   + 
Sbjct: 1   MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKST---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI           + +  E K
Sbjct: 58  PTVRVGGEAQSSFKKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSI-----GQVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRESLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++      G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   + +          I +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTESEL----------IEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E      +      I   E +   +   K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIDGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+ 
Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660


>gi|265753576|ref|ZP_06088931.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA]
 gi|263235290|gb|EEZ20814.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA]
          Length = 665

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/706 (33%), Positives = 364/706 (51%), Gaps = 50/706 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +              E K DGT 
Sbjct: 62  GSDINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRVKKSLN----EDFEICCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    
Sbjct: 118 ISLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L     +   G YE
Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG
Sbjct: 237 NLKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 297 FTAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+GL           D+ +GD V V++ GE+IPK+V +  N R        F ++CP 
Sbjct: 357 DIIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S++VR          AA+ CT   AC  Q   +++HF+SR A +I+GLG + +D F++
Sbjct: 406 CGSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQ 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  IR  AD++TL+      T+ I N+   G+ S  N+   I + + +  ER +F+
Sbjct: 460 E----GLIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ +AK + S    A    + + H          V  +G+ IAQ+I+ ++
Sbjct: 510 LGIRFVGETVAKKVAKSFKSMDALADASLDDLIH----------VDEIGEKIAQSILLYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            NP+N   +E L           E       ++  K +V +G      R + +E + + G
Sbjct: 560 ANPKNRDIIERLRVAGVRLEADEEDTSGHTDKLAGKSVVISGVFAHHSRDEYKELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                 +S KT  ++ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 620 GKNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|296270799|ref|YP_003653431.1| NAD-dependent DNA ligase [Thermobispora bispora DSM 43833]
 gi|296093586|gb|ADG89538.1| DNA ligase, NAD-dependent [Thermobispora bispora DSM 43833]
          Length = 732

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/739 (31%), Positives = 361/739 (48%), Gaps = 62/739 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L + I   +  YY    P + D+EYDA  R    +   +PDL     P+ P  K
Sbjct: 18  RDRHAELAELIEEANWRYYVLDSPTVSDAEYDAWMREIRELEERYPDL---RTPDSPTQK 74

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG ++     VTH     SL+  ++ EDL  +  RI R +         F  E KIDG 
Sbjct: 75  VGGAISTEFTPVTHLRRLESLDNAFSDEDLAAWHARIQRLYGADVGP---FLCELKIDGL 131

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196
            + + YE G+ V AA RGDG +GED++  IR I  +P  L+ + +P ++EVRGEV++   
Sbjct: 132 AVALVYENGRLVRAATRGDGRTGEDITPNIRTIRNVPHRLTGDGVPSLLEVRGEVFLPVE 191

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQ 254
            F  LN++++  G++P+ANPRNAA+G +R+ +P     R L   VHG+G        + Q
Sbjct: 192 GFRRLNEQLLDAGKQPFANPRNAAAGSVRQKDPRVTAQRPLKMIVHGVGVWEGGDPPESQ 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             + +++R LG PV+   R      GI  Y    +  R    Y+IDG+V KVD  ++Q+ 
Sbjct: 252 SAVYERLRELGLPVSERYRVVEDLGGIREYIAYYREHRHDPEYEIDGVVAKVDRIAVQRA 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I+ K+  ++ +T+LLDI + +GRTG +TP A ++PV + G+ +  ATLH
Sbjct: 312 LGSTSRAPRWAIAFKYPPEEVTTKLLDIQVGVGRTGRVTPYAVMKPVVVSGSTVERATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K            + + +GD V++++AG+VIP++V  +V+ R    + F  P+ C
Sbjct: 372 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSEREFVMPTHC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C +R+  +      +  A  RC    +C AQ  ER+     RDA +IEGLG       
Sbjct: 421 PECGTRLAYER-----EGDADLRCPNTKSCPAQLRERIFFAAGRDALDIEGLGYVAASAL 475

Query: 495 FKSEDPAF-SIRIPADIFTLQ-----------RRQQTSTTK-------------IENILG 529
            +   P    IR  AD+F L            R   T   K                + G
Sbjct: 476 TQPLPPQEPPIRTDADLFDLTMDRLLPIKTVVRDPDTGLPKLDPQTGEPKVVSFFATVSG 535

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
               +   L + + + +   L R + +L IRHVG   AR+LA+++ S    A      +A
Sbjct: 536 APSKNAEKLLEQLEQAKQRPLWRILVALSIRHVGPPTARALAEHFRSIDAIAAASEEELA 595

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EI 647
                         +G +IA AI E++    +   +E                      +
Sbjct: 596 AVE----------GIGPVIAAAIKEWFSVDWHREIIERWRAAGVRMADEEPAVPEGPRPL 645

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           E    V TGTL    R +A E +T  G  V++ +S+KTD ++VG+NPGSK  KA +LG+ 
Sbjct: 646 EGLTFVITGTLSGYTRDEAGEAITSRGGRVASSVSKKTDFVVVGENPGSKYAKAVKLGIP 705

Query: 708 IMNEEQFLFLLQQYNTTLR 726
            ++E+ F  LL++     R
Sbjct: 706 RLDEQGFQVLLEKGPDAAR 724


>gi|224539983|ref|ZP_03680522.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518409|gb|EEF87514.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 694

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/707 (32%), Positives = 367/707 (51%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++  L  E+  H+  YY  + P I D E+D + R    +    P+    +D   P  
Sbjct: 32  AKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQDMEREHPEY---QDETSPTM 88

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +VTH  P LSL   ++  ++  F  R  +              E K DG
Sbjct: 89  RVGSDLNKNFTQVTHKYPMLSLGNTYSEGEVSDFYDRTQKALN----EDFEICAELKYDG 144

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK + A  RGDG  G+DV+  ++ I TIP VL  + P++ E+RGE+ +   
Sbjct: 145 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPQLFEIRGEILMPWE 204

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L    E+   G Y
Sbjct: 205 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 263

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQK    GF +++ +++ ++   +  Y +   + R  LP   DG+V KV+    QK L
Sbjct: 264 ENLQKAAQWGFKISDHMKKCHSLQEVFDYIHYWDTERKNLPVATDGIVLKVNSLKQQKNL 323

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 324 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 383

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434
            D I+GL           D+ VGD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 384 ADIIEGL-----------DLHVGDMVYVEKGGEIIPKITGVDKDARSMMVGEKVKFITHC 432

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 433 PECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 486

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++ L          I+N+   GD S  N+   I + + +  ER +
Sbjct: 487 YR----LGLIKDTADLYKLT------VDDIKNLDRMGDKSAENIVKGIAQSKEVPFERAL 536

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D   LI +  +G+ IAQ+I+ 
Sbjct: 537 FALGIRFVGETVAKKIAKSFTDIEEL----------ENADLERLINIDEIGEKIAQSIIS 586

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ NP N   +E L         + E       ++  + +V +G      R + ++ + +
Sbjct: 587 YFANPLNRELIERLKIAGLQFSRKEEDLSGYTDKLAGQSIVISGVFTHHSRDEYKDLIEK 646

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G +KLEKAQ+LGV+IM+E++FL L+
Sbjct: 647 NGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVQIMSEDEFLALI 693


>gi|332977611|gb|EGK14379.1| NAD-dependent DNA ligase LigA [Psychrobacter sp. 1501(2011)]
          Length = 695

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/723 (35%), Positives = 391/723 (54%), Gaps = 47/723 (6%)

Query: 5   QLIPIEALSIEQ--ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           ++  I++L+ EQ     ++ +L  E+  H++ YY   +P I D+EYD L+     +   +
Sbjct: 13  KMNAIKSLNQEQQDIVAKMRTLITEVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEERY 72

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           PDL +S   + P   +G     S  +V H IP LSL  ++N E+L +F+ R+       +
Sbjct: 73  PDLTQS---DSPTASVGDNPLPSFSQVQHDIPMLSLGNVFNKEELAEFMRRVNDRLSSNN 129

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
            N   + +E K+DG  ++++Y+ G+FV    RGDG +GED++  ++ I  IP VL     
Sbjct: 130 KNP-AYEMELKLDGLAVSLKYQNGRFVRGVTRGDGQTGEDITQNVKTINNIPLVLEAAFD 188

Query: 183 -EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240
            E++EVRGEV + K  F  LN E   V  K +ANPRNAA+G LR+L+P     R L F+ 
Sbjct: 189 IEVLEVRGEVLMPKAGFERLNREAKQVDGKIFANPRNAAAGSLRQLDPAVAANRPLAFYA 248

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           + + +        Q E L  ++ +GF V+  V+  N      +YY  +   RS LP++ID
Sbjct: 249 YSVNQGLPEHIVNQSEALDWLKEIGFTVSA-VKVVNDLEEAQAYYESVIEERSGLPFEID 307

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G V KVD   LQ +LG  +R PRW  ++KF  +   T+L  I+ Q+GRTG +TPV +LEP
Sbjct: 308 GTVIKVDNLQLQSELGYLSREPRWATAYKFPAETVMTKLNAIEWQVGRTGQITPVGKLEP 367

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG  ++N TLHN   I+ L           D+R GD V V RAG+VIPKV  +    
Sbjct: 368 VQVGGVTVSNVTLHNIGEIQRL-----------DVRAGDTVSVHRAGDVIPKVTRVWHEL 416

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  D+QP + P+ CP+C S VV           A  RCTG L C AQQ E L HFVSR A
Sbjct: 417 RPEDSQPVTLPTHCPVCDSPVVLPEGE------ALARCTGELFCPAQQQEALIHFVSRKA 470

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GLG++ L  FF+       ++  ADI+ L++ ++     + N    G+ SV NL  
Sbjct: 471 MDIDGLGERWLISFFEQ----GIVKTVADIYHLEQHREA----LINFEKLGEKSVNNLLA 522

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   +  +L RFI+++GI+ VG   A++LAK++                      SL  
Sbjct: 523 AIENSKKTTLSRFIYAIGIKGVGETTAQNLAKHFGDLPALMDA----------SIESLEA 572

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL- 658
           VP +G I A+ I +F++   N+  +EAL++         +       ++ +  V TGTL 
Sbjct: 573 VPDIGTITAEQIYDFFRAKHNVEVIEALIEAGVHWEKVEQVVAEGLPLDGETWVITGTLV 632

Query: 659 -QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
              + R  A+  +  LGA VS  +S KT  ++ G+  GSKL KAQQLGV+++ E +FL +
Sbjct: 633 ESGMSRDDAKSKLQALGAKVSGSVSAKTSALLAGEKAGSKLTKAQQLGVRVVEEAEFLQM 692

Query: 718 LQQ 720
           +Q+
Sbjct: 693 IQE 695


>gi|86142854|ref|ZP_01061293.1| DNA ligase [Leeuwenhoekiella blandensis MED217]
 gi|85830886|gb|EAQ49344.1| DNA ligase [Leeuwenhoekiella blandensis MED217]
          Length = 663

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/706 (31%), Positives = 360/706 (50%), Gaps = 49/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++ +L QE+  ++  YY   KP + D  +D   +    +    P+     D N P  
Sbjct: 3   AQEKIEALRQELRQYNYEYYVLDKPQVDDYTFDQKLKELQEMEAKHPEF---YDANSPTL 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE+  +   V H     SL+  ++ EDL  +  RI +      D ++ +  E K DG
Sbjct: 60  RVGGEVTKNFATVKHEHRMYSLDNSYSQEDLEDWEKRIKKLV----DGAVEYVCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YE+G  V A  RGDG  G+DV+  ++ I ++P  L  + P   ++RGE+ +   
Sbjct: 116 ASISLTYEEGVLVRAVTRGDGVQGDDVTNNVKTIRSVPLKLKGDFPAKFDIRGEIVLPLA 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F A+N E +  G +PY+NPRN ASG L+  +  ++  R L   ++ +     +    Q+
Sbjct: 176 GFAAMNAERVEAGDEPYSNPRNTASGSLKLQDSAEVAKRPLECLLYSIV-GENLDIASQF 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+K R  GF V    ++  +      + N     R  LPY+ DG+V KV+ F  Q++L
Sbjct: 235 ESLEKARSWGFKVPEVAKKTASTAETFEFLNYWDEHRHDLPYETDGVVIKVNSFRQQEEL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++PRW +++KF  +QA T L  I  Q+GRTG +TPVA L PV + G ++  A+LHN
Sbjct: 295 GFTAKAPRWAMAYKFKTEQAETVLEKITYQVGRTGAITPVANLVPVQLAGTIVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           D+R GD V V++ GE+IPK+V +   +R PD+    + S CP
Sbjct: 355 ADQIEKL-----------DVREGDHVYVEKGGEIIPKIVGVDFEQRDPDSTATEYISECP 403

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR          A H C   + C  Q + R++HF+SR A +IEGLG + +    
Sbjct: 404 ECGTTLVRQEGE------AQHYCPNDMGCPPQIIGRIQHFISRKAMDIEGLGGETVALLV 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   I+  AD++TL++ Q     ++       + S  NL   I   + I  ER +F
Sbjct: 458 NE----GLIKNYADLYTLKKEQILPLERMA------EKSADNLIKGIEASKQIPFERVLF 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR+VG  +AR LAK + +    A+     +          + V  +G  IAQ++V F
Sbjct: 508 GLGIRYVGETVARKLAKQFKTIDALAEASEETL----------VAVDEIGARIAQSVVSF 557

Query: 616 YQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +    N   ++ L              +N + +++ +  V +G   K+ R + ++ +   
Sbjct: 558 FSEEANQDLIKRLKDYGLQLELDASVLENQTDKLQGQTFVISGVFSKVSRTELKKLIEDN 617

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G   S  +S KT+ ++ G+N G SKL+KA++LGV I++E+ FL +L
Sbjct: 618 GGKASGSISSKTNYLVAGENMGPSKLQKAEKLGVPIISEDDFLAML 663


>gi|242241743|ref|ZP_04796188.1| DNA ligase [Staphylococcus epidermidis W23144]
 gi|242234833|gb|EES37144.1| DNA ligase [Staphylococcus epidermidis W23144]
          Length = 665

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/708 (34%), Positives = 381/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+   +   + 
Sbjct: 1   MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKST---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI           + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSI-----GQVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRESLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++      G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKERSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   + +          I +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTESEL----------IEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E      +      I   E +   +   K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIDGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+ 
Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660


>gi|88703478|ref|ZP_01101194.1| DNA ligase [Congregibacter litoralis KT71]
 gi|88702192|gb|EAQ99295.1| DNA ligase [Congregibacter litoralis KT71]
          Length = 674

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/712 (32%), Positives = 376/712 (52%), Gaps = 46/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +  R  + SL +++   +  YY    P + D EYD   R    +  A P+L    D 
Sbjct: 1   MPGDDIRNRVHSLREQLERWNHEYYILDSPTVPDQEYDGALRELQTLEEAHPEL---RDA 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G     +   V H +P LSL+  ++ E+L  F+ R+           +    E
Sbjct: 58  SSPTQRVGAAPLSAFSSVEHPMPMLSLDNAFSDEELAAFLKRVVDRLDVDSVPEL--VAE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  +++ Y +G    AA RGDG  GED++  +R I ++P  L   + P ++E+RGE
Sbjct: 116 PKLDGIAVSLIYREGLLERAATRGDGTYGEDITLNVRTIRSVPLKLRGASCPALVEIRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGK-TSE 248
           +++ +  F A N+     G KP+ NPRNAA+G LR+L+     R  L F  +  G+   E
Sbjct: 176 IFMPRAGFEAFNEHARRHGEKPFVNPRNAAAGSLRQLDSKITARRPLEFCAYASGQHPEE 235

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            +    +++LQ     G P++    + +     + Y++ +   R  L +DIDG+VYKV++
Sbjct: 236 GWPGSHWDVLQLFASWGVPISRYAERLSGLDDCIDYFHRLGDERDALSFDIDGIVYKVND 295

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+ Q++LG  AR+PRW I+ KF  ++A T++  ++ Q+GRTG +TPVARLEPV +GG  +
Sbjct: 296 FAAQRELGFVARAPRWSIARKFPAQEAVTKVTGVEFQVGRTGAITPVARLEPVFVGGVTV 355

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L+           +  GD V+V+RAG+VIP+VV +I   R   + P 
Sbjct: 356 SNATLHNMDEIARLN-----------LHHGDSVVVRRAGDVIPQVVSVIAERREESSAPI 404

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+CQS V R          A  RCTGGL C+AQ    ++HF SR A +I+GLG+
Sbjct: 405 DAPPSCPVCQSPVERVAGE------ATLRCTGGLVCAAQLKAAVRHFASRRAMDIDGLGE 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           +R  AD+F L++    S  ++      G+ S   L  +I+  R  
Sbjct: 459 KIVEQLVDR----GLVRDVADLFKLEQGALLSLERM------GEKSAAKLLAAIDASRQT 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFIF+LG+R VG   A +LA ++ + +          A +  D   L+ VP VG ++
Sbjct: 509 TLPRFIFALGVREVGEATALALANHFGTLE----------ALSGADLDDLLEVPDVGPVV 558

Query: 609 AQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A+ +  F++   N+  +   L   ++         V   ++ +  V +G L+   R +A+
Sbjct: 559 AEHVHGFFRADANLGVLRRLLEAGIAWPAVAVAPEVGGALDGQVWVVSGKLESQSRDEAE 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA  +  +S KT +++ G   GSKL KA+ LGV++++E +FL  L+
Sbjct: 619 AALRALGARTAKSVSGKTTVLLAGPGAGSKLSKAESLGVEVISEAEFLTRLE 670


>gi|329959979|ref|ZP_08298475.1| DNA ligase [Bacteroides fluxus YIT 12057]
 gi|328533113|gb|EGF59882.1| DNA ligase [Bacteroides fluxus YIT 12057]
          Length = 665

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/707 (32%), Positives = 362/707 (51%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++  L  E+  H+  YY  + P I D E+D        +    P+    +D N P  
Sbjct: 3   AKEKIDRLRAELHQHNYNYYVLNAPEISDKEFDDKMHELQNLEKEHPEY---QDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYDRVKKTLN----EDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK + A  RGDG  G+DV+  ++ I TIP VL  N P   E+RGE+ +   
Sbjct: 116 TSISLTYEDGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNYPRSFEIRGEILMPWE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L    E+   G Y
Sbjct: 176 SFEMLNREREAREEPLFANPRNAASGTLKSQNSAVVASRKLDAYLYYL-LGEELPCDGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ     GF ++   ++A++   +  Y N   + R  LP   DG+V KV+    QK L
Sbjct: 235 ENLQMAGSWGFKISEHTKKASSLEEVFEYINYWDTERKNLPVATDGIVLKVNSLRQQKNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNKVSYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD V V++ GE+IPK+  +  N R     +   F + C
Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKNARGMLLGEKVRFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C +R++R          AAH C    AC  Q   R++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGNRLIRYEGE------AAHYCPNETACPPQIKGRIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++ L+         I+N+   G+ S  N+ + I   + +  ER +
Sbjct: 458 YR----LGLIKDTADLYDLKA------DDIKNLDRMGEKSAENIINGIAASKEVPFERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D  +L  +  +G+ IAQ+I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSFTDIEEL----------INTDLENLKNIDEIGEKIAQSIIT 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ NP N   V  L         + E       ++  + +V +G      R + +E + +
Sbjct: 558 YFSNPFNRELVGRLKAAGLQLFRKEEDLSGYTDKLTGQSIVISGVFTHHSRDEYKELIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G +KLEKAQ+LGVKIM+E++FL L+
Sbjct: 618 NGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLTLI 664


>gi|15610151|ref|NP_217530.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Rv]
 gi|31794191|ref|NP_856684.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis AF2122/97]
 gi|121638896|ref|YP_979120.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662865|ref|YP_001284388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra]
 gi|148824204|ref|YP_001288958.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis F11]
 gi|161350059|ref|NP_337609.2| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CDC1551]
 gi|167967816|ref|ZP_02550093.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra]
 gi|215431968|ref|ZP_03429887.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
 gi|219559049|ref|ZP_03538125.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T17]
 gi|224991388|ref|YP_002646077.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254365649|ref|ZP_04981694.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|260188040|ref|ZP_05765514.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CPHL_A]
 gi|260206343|ref|ZP_05773834.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis K85]
 gi|289448688|ref|ZP_06438432.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A]
 gi|289553196|ref|ZP_06442406.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605]
 gi|289571216|ref|ZP_06451443.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17]
 gi|289575722|ref|ZP_06455949.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85]
 gi|289755132|ref|ZP_06514510.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
 gi|294993895|ref|ZP_06799586.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 210]
 gi|297635642|ref|ZP_06953422.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN 4207]
 gi|297732640|ref|ZP_06961758.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN R506]
 gi|306777310|ref|ZP_07415647.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001]
 gi|306785860|ref|ZP_07424182.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003]
 gi|306789901|ref|ZP_07428223.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004]
 gi|306794711|ref|ZP_07433013.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005]
 gi|306798954|ref|ZP_07437256.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006]
 gi|306969091|ref|ZP_07481752.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009]
 gi|306973427|ref|ZP_07486088.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010]
 gi|307081136|ref|ZP_07490306.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011]
 gi|307085740|ref|ZP_07494853.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012]
 gi|313659972|ref|ZP_07816852.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN
           V2475]
 gi|54036987|sp|P63973|DNLJ_MYCTU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|54036988|sp|P63974|DNLJ_MYCBO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215822|sp|A1KN09|DNLJ_MYCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216214|sp|A5U726|DNLJ_MYCTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781375|sp|C1AGD0|DNLJ_MYCBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2791611|emb|CAA16099.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE
           SYNTHASE [NAD+]) [Mycobacterium tuberculosis H37Rv]
 gi|31619786|emb|CAD96726.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE
           SYNTHASE [NAD+]) [Mycobacterium bovis AF2122/97]
 gi|121494544|emb|CAL73025.1| Probable dna ligase [nad dependent] ligA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|134151162|gb|EBA43207.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507017|gb|ABQ74826.1| DNA ligase (NAD dependent) LigA [Mycobacterium tuberculosis H37Ra]
 gi|148722731|gb|ABR07356.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis F11]
 gi|224774503|dbj|BAH27309.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289421646|gb|EFD18847.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A]
 gi|289437828|gb|EFD20321.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605]
 gi|289540153|gb|EFD44731.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85]
 gi|289544970|gb|EFD48618.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17]
 gi|289695719|gb|EFD63148.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
 gi|308214358|gb|EFO73757.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001]
 gi|308329532|gb|EFP18383.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003]
 gi|308333670|gb|EFP22521.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004]
 gi|308337029|gb|EFP25880.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005]
 gi|308340842|gb|EFP29693.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006]
 gi|308353381|gb|EFP42232.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009]
 gi|308357226|gb|EFP46077.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010]
 gi|308361179|gb|EFP50030.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011]
 gi|308364771|gb|EFP53622.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012]
 gi|323718395|gb|EGB27569.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CDC1551A]
 gi|326904628|gb|EGE51561.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis W-148]
 gi|328457668|gb|AEB03091.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 4207]
          Length = 691

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/723 (30%), Positives = 353/723 (48%), Gaps = 43/723 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +  ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L  
Sbjct: 4   PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61

Query: 68  SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +GG         V H    LSL+  +  ++L  +  RI+           
Sbjct: 62  -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIP 182
            +  E KIDG  +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +P
Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241
           E++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P    R  L    H
Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           GLG          ++    +R  G PV+     A    G+    +     R  + ++IDG
Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV
Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN   IK            + + +GD V++++AG+VIP+V+  +V  R
Sbjct: 357 KVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  P+ CP C S +         +  A  RC     C  Q  ER+ H  SR+  
Sbjct: 406 DGSEREFIMPTTCPECGSPL-----APEKEGDADIRCPNARGCPGQLRERVFHVASRNGL 460

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IE LG +      +++     I    ++F L  R    T       G    +   L  +
Sbjct: 461 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 516

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           ++K +   L R + +L IRHVG   AR+LA  + S    A    + +A           V
Sbjct: 517 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQLAA----------V 566

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG  IA A+ E++    +   V+         +   +++V   +    +V TG+L   
Sbjct: 567 EGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGF 626

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL   
Sbjct: 627 SRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADG 686

Query: 722 NTT 724
             +
Sbjct: 687 PAS 689


>gi|53713694|ref|YP_099686.1| DNA ligase [Bacteroides fragilis YCH46]
 gi|81382396|sp|Q64TM7|DNLJ_BACFR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52216559|dbj|BAD49152.1| DNA ligase [Bacteroides fragilis YCH46]
          Length = 665

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/708 (32%), Positives = 366/708 (51%), Gaps = 52/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D L R    +    P+    +D N P  
Sbjct: 3   VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKALN----EDFEICCEMKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
           T I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL   N PE+ E+RGE+ +  
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F ALN E  A     +ANPRNAASG L+  N   +  R L+ +++ L     +   G 
Sbjct: 176 EVFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    Q+ 
Sbjct: 235 YENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + C
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I   AD++ L       T  I  +   GD S  N+   I + + +  ER I
Sbjct: 458 YR----LGLIHDTADLYRLT------TDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVI 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D  +LI +  +G+ IA++I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSFKDIEEL----------ENADLETLINIDEIGEKIARSILN 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ N  N   V+ L K     + R E+++S    ++  + +V +G      R + ++ + 
Sbjct: 558 YFANESNRKLVDRL-KTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 617 KHGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|302865766|ref|YP_003834403.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029]
 gi|302568625|gb|ADL44827.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029]
          Length = 717

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/716 (31%), Positives = 362/716 (50%), Gaps = 43/716 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+  ++L QE++ H   YY    P + D+E+D   R  +A+   +P L     P+ P  
Sbjct: 32  ARERHATLSQELTEHQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPAL---RTPDSPTQ 88

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     VTH+   LSL+  +  E+L  +  R+ R         + +  E K+DG
Sbjct: 89  RVGGTFSTDFTPVTHAERMLSLDNAFADEELAAWSERVER----DAGGPVPYLCELKVDG 144

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIEVRGEV 191
             I + YEKG+ V AA RGDG +GEDV+A +R+I  +P  L+      ++P++IEVRGE+
Sbjct: 145 LAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIKGVPARLTPAGDFPDVPDLIEVRGEI 204

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G  +   
Sbjct: 205 YFPVAAFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGVGARTGFR 264

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    ++  G P ++  R  +   G+  Y       R  + ++IDG+V KVD  S
Sbjct: 265 PAAQSESYAALKAWGLPTSDRWRVVDDLAGVAEYIAYYGRHRHDVEHEIDGVVVKVDPVS 324

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I+ K+  ++ +T+LLDI++++GRTG +TP A L+PV + G+ +  
Sbjct: 325 IQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRAVLQPVRVAGSTVAY 384

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   ++            + + +GD V++++AG+VIP+V+  +V  R  DA+PF  
Sbjct: 385 ATLHNAREVER-----------KGVLIGDTVVLRKAGDVIPEVLGPVVELRPADARPFVM 433

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +         +     RC  G AC  Q  ER+ +  SR   +IE LG++ 
Sbjct: 434 PTTCPACGTPL-----APAKESDVDIRCPNGRACPGQIRERVFYLASRKVLDIEVLGEKG 488

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 ++     I    D+F L   Q + +    N  G    + T L D++ + +   L
Sbjct: 489 AAALLDAQI----ITNEGDLFQLDAEQLSRSPFFVNKDGSLGSNATKLLDNLAEAKERDL 544

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LA+++ S           ++           V  VG  IA 
Sbjct: 545 WRVLVALSIRHVGPTAAQALARHFRSVAAIEAAGEEELS----------SVDGVGPTIAA 594

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ E++    +   V    +                ++   +V TGTL    R +A E +
Sbjct: 595 SVKEWFAVDWHRDVVRKWAEAGVRMAEEAADEGPRPLDGITVVVTGTLSGFSRDQAAEAI 654

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
              G  V+  +S+KT  ++VGDNPGSK +KA  L + I++E+ F  LL       R
Sbjct: 655 QVRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKLPILDEDGFRVLLDSGPEAAR 710


>gi|212693183|ref|ZP_03301311.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855]
 gi|212664288|gb|EEB24860.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855]
          Length = 665

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/706 (33%), Positives = 364/706 (51%), Gaps = 50/706 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +              E K DGT 
Sbjct: 62  GSDINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRVKKSLN----EDFEICCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    
Sbjct: 118 ISLTYENGKLLRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L     +   G YE
Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG
Sbjct: 237 NLKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 297 FTAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+GL           D+ +GD V V++ GE+IPK+V +  N R        F ++CP 
Sbjct: 357 DIIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S++VR          AA+ CT   AC  Q   +++HF+SR A +I+GLG + +D F++
Sbjct: 406 CGSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQ 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  IR  AD++TL+      T+ I N+   G+ S  N+   I + + +  ER +F+
Sbjct: 460 E----GLIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ +AK + S    A    + + H          V  +G+ IAQ+I+ ++
Sbjct: 510 LGIRFVGETVAKKVAKSFKSMDALADASLDDLIH----------VDEIGEKIAQSILLYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            NP+N   +E L           E       ++  K +V +G      R + +E + + G
Sbjct: 560 ANPKNRDIIERLRVAGVRLEADEEDTSGHTDKLAGKSVVISGVFAHHSRDEYKELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                 +S KT  ++ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 620 GKNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|60681965|ref|YP_212109.1| putative DNA ligase [Bacteroides fragilis NCTC 9343]
 gi|81314971|sp|Q5LCI0|DNLJ_BACFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|60493399|emb|CAH08185.1| putative DNA ligase [Bacteroides fragilis NCTC 9343]
          Length = 665

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/708 (32%), Positives = 366/708 (51%), Gaps = 52/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D L R    +    P+    +D N P  
Sbjct: 3   VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKALN----EDFEICCEMKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
           T I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL   N PE+ E+RGE+ +  
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F ALN E  A     +ANPRNAASG L+  N   +  R L+ +++ L     +   G 
Sbjct: 176 EVFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    Q+ 
Sbjct: 235 YENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + C
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I   AD++ L       T  I  +   GD S  N+   I + + +  ER I
Sbjct: 458 YR----LGLIHDTADLYQLT------TDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVI 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D  +LI +  +G+ IA++I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSFKDIEEL----------ENADLETLINIDEIGEKIARSILN 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ N  N   V+ L K     + R E+++S    ++  + +V +G      R + ++ + 
Sbjct: 558 YFANESNRKLVDRL-KTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 617 KHGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|260063119|ref|YP_003196199.1| DNA ligase [Robiginitalea biformata HTCC2501]
 gi|88784688|gb|EAR15858.1| DNA ligase [Robiginitalea biformata HTCC2501]
          Length = 673

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/713 (31%), Positives = 369/713 (51%), Gaps = 48/713 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++     +++ +L  E+  H+  YY   +P+I D ++D   +    +    P+     
Sbjct: 3   EKVNKRDIAEKIQALRDELRDHNYRYYVLDEPVISDYDFDMKLKALQDLEKQHPEF---Y 59

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           DP  P  ++GG +  +   V H  P  SL+  +++E+LR++  RI R      D  + FT
Sbjct: 60  DPASPTQRVGGAITKNFETVVHDYPMYSLDNSYSVEELREWEKRIQRVLG---DVPVTFT 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E K DG  I++ Y+ G  + A  RGDG  G+DV+  +R I +IP  L  + P   ++RG
Sbjct: 117 CELKYDGASISLTYQDGALLRAVTRGDGTQGDDVTTNVRTIRSIPLRLQGDYPNRFDIRG 176

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E+ +    F  +N E +  G  PY NPRN ASG L+  + + +  R L+  ++G+    +
Sbjct: 177 EIVLPLEGFARMNRERVENGEDPYMNPRNTASGSLKLQDSSIVAERPLDCLLYGMA-GRD 235

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + A   +E+L   R LGF V +  +       +V+Y     S R  LPY+ DG+V KV+ 
Sbjct: 236 LGADSHFEILGLARKLGFKVPDTAKLCKNIDEVVAYLEYWDSHRLELPYETDGVVVKVNS 295

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++LG  A+SPRW +++KF  +QA+TRL  I  Q+GRTG +TPVA LEPV + G  +
Sbjct: 296 LQQQEELGYTAKSPRWAMAYKFKSEQAATRLERITYQVGRTGAITPVANLEPVLLAGTTV 355

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN D I  L           D+R GD V V++ GE+IPK+  +  ++R  ++ P 
Sbjct: 356 KRASLHNADQIAKL-----------DVREGDTVYVEKGGEIIPKITGVDFSKRPENSAPT 404

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           ++ S CP C + +VR+         A H C     C  Q   R++HF+SR A +IEGLG 
Sbjct: 405 TYISACPECGTELVRNPGE------AQHFCPNDTGCPPQITGRIQHFISRKAMDIEGLGS 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++  FK       I   AD++TL         ++       + S  NL + +   R +
Sbjct: 459 ETVELLFKE----GLIGDYADLYTLTTDDLLPLERMA------EKSAANLVEGVAASRKV 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             ER +F+LGIR+VG  +A+ LA+ Y       + I+ ++A + D+     +V  +G  I
Sbjct: 509 PFERVLFALGIRYVGETVAKKLARAY-------KNIDALMAASADELQ---QVDEIGQRI 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKA 666
           A ++VEF+ +P N   VE L           E+          K  V +G  + I R++ 
Sbjct: 559 AGSVVEFFSDPVNRERVEKLKGHGLQFSLSEEQLRGQTDLFRGKTFVVSGVFESIGRNEL 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           ++ +   G  V++ +S +T+ ++ G N G SK EKA + GV I++E QFL +L
Sbjct: 619 KKRIEDNGGKVTSSVSARTNFLVAGANMGPSKREKADKNGVPIISETQFLEML 671


>gi|251809892|ref|ZP_04824365.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874546|ref|ZP_06283431.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135]
 gi|293367782|ref|ZP_06614431.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|251806557|gb|EES59214.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296685|gb|EFA89194.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135]
 gi|291318121|gb|EFE58518.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329734727|gb|EGG71033.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU045]
 gi|329734798|gb|EGG71103.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU028]
          Length = 665

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/708 (34%), Positives = 381/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+   +   + 
Sbjct: 1   MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKST---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI     K     + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++      G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   + +          I +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTESEL----------IEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E      +      I   E     +   K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+ 
Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660


>gi|242371787|ref|ZP_04817361.1| DNA ligase [Staphylococcus epidermidis M23864:W1]
 gi|242350488|gb|EES42089.1| DNA ligase [Staphylococcus epidermidis M23864:W1]
          Length = 667

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 376/714 (52%), Gaps = 53/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  ++ ++ L   ++ +   YY    P + DSEYD L      I    P+   +   + 
Sbjct: 1   MEDLQRRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIETEHPEYKTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y+ GKFV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYQDGKFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN +    G +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A 
Sbjct: 171 PRRSFMNLNKQKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFTDFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   L ++  LGF  N    + +   G++ Y  +    R +L YDIDG+V KV++   Q
Sbjct: 231 TQSGALNELDQLGFKTNQERERVSDIEGVLKYIEKWTDKRESLSYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPDDAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++E     I+  ADIF LQ        ++          V NL  +I K ++ S E 
Sbjct: 453 QLYENE----LIKDVADIFYLQEEDLLPLERMGT------KKVENLLAAIEKAKDNSFEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +     +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLEVTEAEL----------VEIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +      I   E     E   K +V TG L+++ R +A +
Sbjct: 553 VTYLENEDIRALIQKLKDKNVNMSYKGIKTTEIEGHPEFSGKTIVLTGKLEQMTRSEASQ 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  EE+F    ++ N
Sbjct: 613 WLEMQGAKVTNSVTKSTDIVIAGADAGSKLTKAEKFGTEIWTEEEFANKQKELN 666


>gi|288801242|ref|ZP_06406697.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331853|gb|EFC70336.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 666

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/713 (32%), Positives = 371/713 (52%), Gaps = 52/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQ  + +  L +E+  H+  YY  + P I D  +DAL     ++ +A P+     D 
Sbjct: 1   MTTEQ--ERIIELRKELHQHNYNYYVLNAPQIDDFTFDALLHELQSLENAHPE---MYDA 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++G ++  S  +V H  P LSL   +N +++  F   + +F             E
Sbjct: 56  NSPTQRVGSDLQESFEQVVHVYPMLSLSNTYNKQEVADFYNTVSKFLN---GEEFEICCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            K DG  I++RYE GK V A  RGDG  G+DV+A ++ I TIP VL  N  P + E+RGE
Sbjct: 113 LKYDGLSISLRYEDGKLVRAVTRGDGTRGDDVTANVKTIKTIPLVLQGNDYPAVFEMRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           V +    F  LN+E        +ANPRNAASG L+ LNP  +  R L+ +++ L    +I
Sbjct: 173 VLMPWKVFDKLNEERRQQEEPLFANPRNAASGTLKSLNPVLVAKRSLDAYLYYL-LGEDI 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
              G +E L+  +  G  +  G+R+ ++   I ++ +     R  LP   DG+V KV+  
Sbjct: 232 NIDGHFERLEAAKRWGVKIGEGMRKVSSLEDIYAFIDYWDVERKNLPVATDGIVLKVNSL 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+ +G  A++PRW I++KF  ++  T+L  +  Q+GRTG +TPVA +EPV + G ++ 
Sbjct: 292 KQQQSMGFTAKNPRWAIAYKFKAERELTKLESVSYQVGRTGTITPVANMEPVLLAGTVVK 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATL+NED+IK             D+ +GD V V++ GE+IPK+V + +++R    QP  
Sbjct: 352 RATLNNEDFIKSF-----------DLHIGDYVYVEKGGEIIPKIVGVELSKRTEGMQPIE 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP C +++VR          AA+ C   + C  Q   +++HF++R A NI+ LG +
Sbjct: 401 FIKTCPECGTQLVRYEGQ------AAYYCPNDMGCPPQIKGKIEHFIARKAMNIDSLGPE 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D ++        I+  AD++ L            N  G    S   + D+I K + + 
Sbjct: 455 TIDSYYNK----GLIKDVADLYCL-------AIDDINEGGAHQKSAKKVIDAIEKSKQVP 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +F+LGIR VG   AR LA+ +          N+I +  N     L+ V  VGDIIA
Sbjct: 504 FDRVLFALGIRFVGETSARLLARKF----------NDINSLRNATAAQLLEVEGVGDIIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            ++V F+ + +NI  +E L             E    + +E K +V +G      R + +
Sbjct: 554 TSVVTFFSDEKNIALIERLESYGLQMAMPVMDEGPKGNVLEGKTIVISGIFTHHSRDEYK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             + QLG   +  +S KT  ++ GDN G SKL+KA+ LGVKI++E++FL +++
Sbjct: 614 AMIEQLGGKNTGSISAKTSFVLAGDNMGPSKLQKAESLGVKILSEDEFLEMIK 666


>gi|116334213|ref|YP_795740.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367]
 gi|122269104|sp|Q03Q13|DNLJ_LACBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116099560|gb|ABJ64709.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367]
          Length = 676

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/717 (35%), Positives = 392/717 (54%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PI+ L++EQA +E + L  ++      YY+   P + D  YD +  R  A+  AFP++  
Sbjct: 5   PIKTLTVEQAAEEAADLRPQLLEWGKQYYEADAPSVEDDVYDRVYARLVALETAFPEIV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++GG     L KVTH IP LSL  ++++++L +F  R     +   D    
Sbjct: 64  --TPDSPTQRVGGSSRSDLPKVTHDIPMLSLGDVFSLDELTEFDER----LRGNVDTPFD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  E KIDG  I++RYE GKFV  + RG+G  GED++A ++ I +IP+ LS   P  IEV
Sbjct: 118 YNCELKIDGLAISLRYENGKFVQGSTRGNGQIGEDITANLKTIKSIPQTLS--RPLTIEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGE Y+ K  FLALN+   A G+ P+ANPRNAA+G LR+L+      R L  F++ +   
Sbjct: 176 RGECYMPKAAFLALNERREAAGQAPFANPRNAAAGSLRQLDTRVTADRQLATFMYNVADY 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             +  + Q  +L ++  LGF  N   R A+    + +Y    ++ R+ L Y IDG+V K 
Sbjct: 236 EPLTTRTQSGLLDELAELGFTTNATYRVAHDMADVAAYIETYQAQRTELAYGIDGIVIKA 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++  LQ+ LG   + PRW I++KF  ++  TR+LDI+  IGRTG++TP A +EPV + G+
Sbjct: 296 NDLPLQRSLGATVKVPRWAIAYKFPPEEVQTRVLDIEWTIGRTGVVTPTAIMEPVALAGS 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  A+LHN DY+             +DIR+GD VL+ +AG++IP++   +  +R  +A+
Sbjct: 356 TVARASLHNPDYL-----------IAKDIRIGDTVLLHKAGDIIPEISQYVAAKRPAEAK 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            +  P+ CP C + +V   +        A RC     C AQ  E + HF SR+A NI GL
Sbjct: 405 AYVIPTTCPSCGAELVHLDDE------VALRCINPR-CPAQLAEGMNHFASRNAMNIAGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G Q +   F        ++  AD++ L   Q  +  K      FG+ S  NL  +I+  R
Sbjct: 458 GPQIVAQLFDRN----LVQDVADLYRLTTDQLLTLDK------FGEKSAQNLLTAIDNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           N SLER +F LGIRHVGA+ ARSLA  +    +              D   +  +  VG 
Sbjct: 508 NNSLERLLFGLGIRHVGAKAARSLAAAFGDMASLMAA----------DSEQISAIDTVGG 557

Query: 607 IIAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IIA ++V ++ N +    V   +A+   ++ + G    N +SE   K++V TG LQ++ R
Sbjct: 558 IIADSVVTYFANTQVHELVAKLQAVGVNMTYTSGTPATNSTSEFTGKRVVLTGKLQELTR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A E++ Q GA V+  +S+KTD++I G+  GSKL KAQ L V + NE Q    + +
Sbjct: 618 PQATEWLEQHGATVTGSVSKKTDLLIAGEAAGSKLAKAQSLDVPVWNEAQLQAAMDE 674


>gi|227892258|ref|ZP_04010063.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741]
 gi|227865899|gb|EEJ73320.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741]
          Length = 672

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/719 (33%), Positives = 395/719 (54%), Gaps = 55/719 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +    EL  L  +++   + YY    P + DS YD   +R   +  A PDL  +   
Sbjct: 1   MSQKDIEMELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KV H IP LSL  +++ E+L +F+ R     +   +  + ++ E
Sbjct: 58  DSPSQRVGGKVLSGFTKVNHDIPMLSLGDVFSKEELIEFLER----LENSVEQKLDYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE GKF+  + RG+G  GED++  ++ I  IP  L  N P  IEVRGE 
Sbjct: 114 LKIDGLAISLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIPMEL--NEPVSIEVRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN +  A G+  +ANPRNAA+G LR+L+     +R L+ F++ L +  ++ 
Sbjct: 172 YMPKKSFVELNTKREAEGQAVFANPRNAAAGSLRQLDTKITASRNLSTFIYYLMEPEKLG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E L K+   GF VNN  +Q  T   I +Y +E    R+ LPYDIDG+V KV+ F+
Sbjct: 232 IKTQTEALNKLESWGFKVNNESKQVKTKEEIFAYIDEATDQRANLPYDIDGIVLKVESFA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q Q+G   + PRW I++KF   +  T++LDI+  +GRTG++TP A +EPV + G  +  
Sbjct: 292 VQSQVGNTVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVAR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY++            +DIR+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 352 ASLHNPDYLR-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRTEDSVEYQI 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +V   +        A RC     C A   E L HF SR+A +I GLG + 
Sbjct: 401 PTECPECGANLVHLDDE------VALRCINP-QCPALVKESLTHFASRNAMDIRGLGPRI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  +  E     I+  A I++L   Q  +  K      F + S  NL  +IN  RN S+
Sbjct: 454 IEQLYNREM----IKDVAGIYSLTFEQLITLDK------FKEKSANNLLTAINNSRNNSI 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA++AR LA+ Y S  N A+  ++ I+           +  +G II  
Sbjct: 504 ERLIFGLGIRHVGAKVARILAENYKSMDNLAKAKSDEIS----------TIDSLGKIIGD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSP-------SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++  ++ +   +  ++ L +              + E +  S     ++V TGTL  ++R
Sbjct: 554 SVEMYFADEHVMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A+ ++   GA V+  +S+KTD++I G + GSKL KAQ+L V++MNE +F+  +++ +
Sbjct: 614 SEAKSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEEES 672


>gi|288927843|ref|ZP_06421690.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330677|gb|EFC69261.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 665

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/711 (31%), Positives = 364/711 (51%), Gaps = 51/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E+ +  +  L +++ +H+  YY  + P + D E+D L R    +    P++    DPN 
Sbjct: 1   MEEIK-RIEELREQLHHHNYLYYVQNSPTLSDQEFDRLMRELQDLEAKHPEV---YDPNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +++    +V H    LSL   +N +++  +   + +              E K
Sbjct: 57  PTQRVGSDLSTGFTQVKHKYAMLSLANTYNEQEVASWYATVSKDLG---GQPFEVCCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
            DG  I++ YE+G+ V A  RGDG  G+DV+A +R I  IP VL     P   E+RGE+ 
Sbjct: 114 YDGLSISLTYEQGRLVRAVTRGDGEQGDDVTANVRTIRAIPLVLPGTGYPNEFEIRGEIL 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +    F  LN ++   G    ANPRNAA G L+  +P  +  R L+ +++ L    ++ +
Sbjct: 174 MPWKVFEQLNVKLEKAGETLLANPRNAAVGALKSHDPRLVAKRKLDAYLYYL-LGDDLPS 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G YE L+     GF V+ G+ +A +   I  + N   + R  LP   DG+V KV+    
Sbjct: 233 DGHYENLKAAETWGFKVSQGMHKATSLEQIYEFINHWDTARHDLPVATDGIVLKVNSLRQ 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  A+SPRW I++KF  ++  TRL ++  Q+GRTG +TPVA +EPV + G  +  A
Sbjct: 293 QQQLGFTAKSPRWAIAYKFKAERVCTRLNEVTFQVGRTGAVTPVANMEPVLLAGTTVKRA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+NED+I+ L           D+ +GD V V++ GE+IPK+V + V+ R P+ QP  F 
Sbjct: 353 TLNNEDFIRSL-----------DLHIGDNVFVEKGGEIIPKIVGVDVSHRSPNLQPVHFI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C S +VR          AA+ C     C  Q   R++HF++R A NI+ +G + +
Sbjct: 402 SNCPECGSPLVRYAGE------AAYYCPNDTGCPPQIKGRIEHFIARKAMNIDSIGPETV 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D +F+       +R  AD++ ++       T+  N  G    S   +   I    +   E
Sbjct: 456 DDYFRR----GIVRNVADLYEIR-------TEQINGDGTRQKSAQKIVKGIQDSVSTPFE 504

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F+LGIR VG   A+ LAK++ S                     L+ V  VG +IA++
Sbjct: 505 RVLFALGIRFVGETTAKLLAKHFKSIDALMVATPE----------QLVEVEGVGTVIAES 554

Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +V F+ +  N+  +E L +           ++  S ++  K +V +G  ++  R + +E 
Sbjct: 555 VVRFFHDEVNLNIIERLRQYGLQMSQSVDQQQPASEKLAGKNIVISGVFEQHSRDEYKEM 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + + G    + +S KT  I+ G N G SK++KAQQLG+ +++E  FL +L+
Sbjct: 615 IERNGGKNVSSISSKTSFILAGANMGPSKMQKAQQLGIDMIDESAFLKMLE 665


>gi|116626792|ref|YP_828948.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122251346|sp|Q01NV7|DNLJ_SOLUE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116229954|gb|ABJ88663.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 662

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/701 (33%), Positives = 367/701 (52%), Gaps = 48/701 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+  L +++ +H+  YY   KP I D+EYDAL  R   +    PDL     P+ P  ++G
Sbjct: 7   EIEKLREQLHHHEHLYYVLDKPEITDAEYDALMHRLQELETKHPDLL---TPDSPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+      KV HS P LSL+   N  +LR F  R+          +  +  E K+DG  +
Sbjct: 64  GKPREGFIKVRHSSPMLSLDNALNEAELRDFDRRVRDLLG---GAAFRYVTELKMDGLSM 120

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
              Y  GKF  A  RGDG +GEDV+   R I ++P  +   +P   EVRGE  +S+  F 
Sbjct: 121 AAHYNNGKFTEAVTRGDGTTGEDVTENARTIRSLPLRVKTKLPA-FEVRGETVMSRRAFE 179

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN +    G   +ANPRNAA+G LR+L P    +R L ++ + L        +  +E L
Sbjct: 180 RLNTDRDEKGLSRFANPRNAAAGSLRQLEPQVTASRRLEYYTYFLLTEGRPAYESHWEAL 239

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             ++ +GF VN+  R  ++   ++++    +  R  LPY+IDG+V KVD    Q++LG  
Sbjct: 240 TALKQMGFKVNDKSRPCDSIDEVLAFCAHWEGERENLPYEIDGVVVKVDSVEQQRRLGFT 299

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A++PRW I++K+  +QA+T +  ID+Q+GRTG LTPVA L+PV +GG  ++ ATLHNED 
Sbjct: 300 AKAPRWAIAYKYPARQATTMIEGIDVQVGRTGALTPVANLKPVVVGGVTVSRATLHNEDE 359

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+ L            +++GD V+V+R+G+VIPKVV +  + +    +PF  PS CP+C 
Sbjct: 360 IERL-----------GLQIGDEVVVERSGDVIPKVVRV--SSQGSYRKPFKMPSHCPVCN 406

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           +++VR+         AA RC     C A+  E + HF SR   NI+G+G   +D     E
Sbjct: 407 TKIVREEGE------AASRCINA-NCPARLKESILHFASRGVMNIDGMGDALVDQLVDRE 459

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                +   AD++ L+        ++      G  S  N+  +I+K R  SL R + +LG
Sbjct: 460 I----VHNIADLYDLKIEDLMDLDRM------GVKSAGNVIRNIDKSRRNSLPRVLTALG 509

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IR VG   A  LA+ + S     +   + +    +          VG  +A+A+V+F+  
Sbjct: 510 IRFVGERTAVFLAQAFGSMDAIERATVDELQQAEE----------VGPKVAEAVVQFFSI 559

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           P N   V+ L K        + +     +     V TGTL  + R +A++ + Q G  V+
Sbjct: 560 PDNRELVDRLRKADLQFTYAYSRPKGGPLTGSTFVLTGTLPNLSREEAKQLIEQAGGKVA 619

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +S+KT  ++ G++ GSKL+KA QL ++++ E +   +L+
Sbjct: 620 SAVSKKTSYVVAGEDAGSKLDKAHQLNIRVITEAELHAMLR 660


>gi|326797492|ref|YP_004315311.1| DNA ligase [Sphingobacterium sp. 21]
 gi|326548256|gb|ADZ76641.1| DNA ligase [Sphingobacterium sp. 21]
          Length = 672

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/714 (29%), Positives = 370/714 (51%), Gaps = 48/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A   + +L +E++ H+  YY  ++P I D ++D       A+   +P+     DP
Sbjct: 1   MQRNDALSRIEALTKELNDHNYKYYVLAQPSISDFDFDQKLAELAALEKDYPEFL---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG++      V H  P LSL   ++ ++L+ F  RI +       +   +  E
Sbjct: 58  DSPTQKVGGDITKQFKTVRHKWPMLSLSNTYSEKELKDFDERIRKVLG----DDFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190
            K DG  I++ YE+G       RGDG  G++V++ I+ I ++P  +   + P++ E+RGE
Sbjct: 114 LKFDGLSISLTYEQGVLTRGVTRGDGTQGDEVTSNIKTIKSVPNKIKSGHFPDLFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-KTSE 248
           V++ +  F  LN E +     PYANPRN A+G ++  + +++  R L+ F++ L     +
Sbjct: 174 VFMHRAAFERLNKERLENDEIPYANPRNFAAGTIKLQDSSEVAKRPLDCFLYFLYMDNRD 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K  +E L+ ++  GF V+   +   T   ++ + +     R  L YDIDG+V KV+ 
Sbjct: 234 RLFKTHWESLEAVKSWGFHVSEHTKLCRTIDEVLQFISYWDDARHKLSYDIDGIVIKVNS 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           ++ Q +LG  A+SPRW I++K+  ++  T L  +  Q+GRTG +TPVA LEPV + G  +
Sbjct: 294 YAQQHELGFTAKSPRWAIAYKYKAEEVETILKSVSYQVGRTGAVTPVANLEPVQLSGTTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN + I  L           D+   D V+V++ GE+IPK++ +  ++R PD +  
Sbjct: 354 KRATLHNANEITRL-----------DLHELDTVMVEKGGEIIPKIIGVNKDKRVPDTKQI 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           ++P+ CP+C + ++R          A H C   L C  Q + +++HF+SR A +IEG+G 
Sbjct: 403 AYPTHCPVCNTVLIRKEGE------AVHYCPNELGCPPQIVGKIQHFISRKAMDIEGMGN 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++  +K       ++  +D++ L   +     ++E I  FG+ S+ N+   I K +  
Sbjct: 457 ETVEVLYKK----GLLKQISDLYQLHHHK----EELEQIERFGEKSINNMLLGIQKSKER 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             ++ +F LGIR+VG  IA+ LA  + +  N  Q     IA           V  +G+ I
Sbjct: 509 PFQKVLFGLGIRYVGETIAKKLANSFKNIDNLIQASVEEIAA----------VDEIGERI 558

Query: 609 AQAIVEFYQNPRNICAVE--ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           AQ++ E++ N  ++  VE           I    +  S+++ +K  V +G  +   R   
Sbjct: 559 AQSVKEYFSNTLHLHQVEILKGENLQFAIIEEEFQLNSNKLADKSFVISGVFEHYSREDL 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + Q G  + + +S K + ++ GDN G SKL KAQ+  + I++E + + ++Q
Sbjct: 619 GKIIVQNGGKLLSGISAKLNYLVAGDNMGPSKLAKAQKFNIPIISEVELIKMIQ 672


>gi|315660157|ref|ZP_07913014.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590]
 gi|315494838|gb|EFU83176.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590]
          Length = 667

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/708 (34%), Positives = 379/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   ++ +   YY    P + DSEYD L      I    P+   +   + 
Sbjct: 1   MDNLQHRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTT---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDL++F  RI           + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVRHDTPMLSLGNAFNEEDLKRFDQRIRDHI-----GEVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE GKFV    RGDG +GED++  +R I  IP  L L  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGKFVQGLTRGDGTTGEDITENLRTIHAIP--LKLKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F++LN +      +P+ANPRNAA+G LR+L+      R L+ F++ +   S+  A 
Sbjct: 171 PRASFMSLNKQKEKNNEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFSDFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q + L ++  LGF  NN     +   G+++Y  +  + R +L YDIDG+V KV++ + Q
Sbjct: 231 TQSDALDELDRLGFKTNNERECVSDIDGVLAYIEKWTAKRESLAYDIDGIVIKVNDLAQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  TRLLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVTRLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I+  R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIERRPNDAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C  ++VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHKLVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++ E     I+  ADIF L         ++      G   V NL  +I+K ++ SLE 
Sbjct: 453 QLYQHE----LIKDVADIFYLTEEDLLPLERM------GKKKVENLLQAIDKAKSNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+GA+ +  LA+ Y + +       + +          I +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGAKASYVLAEKYETIERLLTVTEDEL----------ISIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +       +      +   E     E ++K +V TG L+++ R +A +
Sbjct: 553 VTYLENEDIQSLISKLANKDVNMTFKGVKISELAGHPEFQDKTIVLTGKLEQMTRKEAAD 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TD++I G++ GSKL KAQ+ G +I +E  F+ 
Sbjct: 613 WLQLQGAKVTNSVTKNTDLVIAGEDAGSKLTKAQKFGTEIWSESDFIS 660


>gi|215412865|ref|ZP_03421575.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis
           94_M4241A]
 gi|298526485|ref|ZP_07013894.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496279|gb|EFI31573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis
           94_M4241A]
          Length = 691

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/723 (30%), Positives = 353/723 (48%), Gaps = 43/723 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +  ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L  
Sbjct: 4   PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61

Query: 68  SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +GG         V H    LSL+  +  ++L  +  RI+           
Sbjct: 62  -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIP 182
            +  E KIDG  +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +P
Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241
           E++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P    R  L    H
Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           GLG          ++    +R  G PV+     A    G+    +     R  + ++IDG
Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV
Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN   IK            + + +GD V++++AG+VIP+V+  +V  R
Sbjct: 357 KVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  P+ CP C S +         +  A  RC     C  Q  ER+ H  SR+  
Sbjct: 406 DGSEREFIMPTTCPECGSPL-----APEKEGDADIRCPNARGCPGQLRERVFHVASRNGL 460

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IE LG +      +++     I    ++F L  R    T       G    +   L  +
Sbjct: 461 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 516

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           ++K +   L R + +L IRHVG   AR+LA  + S    A    + +A           V
Sbjct: 517 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQVAA----------V 566

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG  IA A+ E++    +   V+         +   +++V   +    +V TG+L   
Sbjct: 567 EGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGF 626

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL   
Sbjct: 627 SRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADG 686

Query: 722 NTT 724
             +
Sbjct: 687 PAS 689


>gi|258422981|ref|ZP_05685880.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9635]
 gi|257846768|gb|EEV70783.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9635]
          Length = 667

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/715 (33%), Positives = 375/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIHD-----------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L         ++          V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +  +   I   +     E   K +V TG L K+ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHKMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++T  GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLTSQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|150005810|ref|YP_001300554.1| DNA ligase [Bacteroides vulgatus ATCC 8482]
 gi|237725408|ref|ZP_04555889.1| DNA ligase [Bacteroides sp. D4]
 gi|319640984|ref|ZP_07995691.1| DNA ligase [Bacteroides sp. 3_1_40A]
 gi|166215396|sp|A6L5G8|DNLJ_BACV8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149934234|gb|ABR40932.1| DNA ligase [Bacteroides vulgatus ATCC 8482]
 gi|229436095|gb|EEO46172.1| DNA ligase [Bacteroides dorei 5_1_36/D4]
 gi|317387362|gb|EFV68234.1| DNA ligase [Bacteroides sp. 3_1_40A]
          Length = 665

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/706 (33%), Positives = 363/706 (51%), Gaps = 50/706 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +              E K DGT 
Sbjct: 62  GSDINKNFTQVVHKYPMLSLANTYSETEVTEFYDRVKKSLN----EDFEICCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    
Sbjct: 118 ISLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPETFEIRGEILMPWVV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L     +   G YE
Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG
Sbjct: 237 NLKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+P+ + G ++  A+LHN 
Sbjct: 297 FTAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+GL           D+ +GD V V++ GE+IPK+V +  + R        F + CP 
Sbjct: 357 DIIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S++VR          AA+ CT   AC  Q   +++HF+SR A NI+GLG + +D F++
Sbjct: 406 CGSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQ 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  IR  AD++TL+      T+ I N+   G+ S  N+   I + + +  ER +F+
Sbjct: 460 E----GLIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ +AK + S    A    + + H          V  +G+ IAQ+I+ ++
Sbjct: 510 LGIRFVGETVAKKVAKSFKSMDALADASLDNLIH----------VDEIGEKIAQSILLYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            NP+N   +E L           E       ++  K +V +G      R + +E + + G
Sbjct: 560 ANPKNRDIIERLRVAGVRLEADEEDTSEHTDKLAGKSIVISGVFAHHSRDEYKELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                 +S KT  I+ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 620 GKNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|237709923|ref|ZP_04540404.1| DNA ligase [Bacteroides sp. 9_1_42FAA]
 gi|229456016|gb|EEO61737.1| DNA ligase [Bacteroides sp. 9_1_42FAA]
          Length = 665

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/706 (33%), Positives = 364/706 (51%), Gaps = 50/706 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +              E K DGT 
Sbjct: 62  GSDINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRVKKSLN----EDFEICCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    
Sbjct: 118 ISLTYENGKLLRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L     +   G YE
Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG
Sbjct: 237 NLKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 297 FTAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+GL           D+ +GD V V++ GE+IPK+V +  N R        F ++CP 
Sbjct: 357 DIIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S++VR          AA+ CT   AC  Q   +++HF+SR A +I+GLG + +D F++
Sbjct: 406 CGSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQ 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  IR  AD++TL+      T+ I N+   G+ S  N+   I + + +  ER +F+
Sbjct: 460 E----GLIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ +AK + S    A    + + H          V  +G+ IAQ+I+ ++
Sbjct: 510 LGIRFVGETVAKKVAKSFKSMDALADASLDDLIH----------VDEIGEKIAQSILLYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            NP+N   +E L           E       ++  K +V +G      R + +E + + G
Sbjct: 560 ANPKNRDIIERLRVAGVRLEADEEDTSGHTDKLAGKSIVISGVFAHHSRDEYKELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                 +S KT  ++ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 620 GKNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|222151884|ref|YP_002561044.1| DNA ligase [Macrococcus caseolyticus JCSC5402]
 gi|254781362|sp|B9E830|DNLJ_MACCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222121013|dbj|BAH18348.1| DNA ligase [Macrococcus caseolyticus JCSC5402]
          Length = 663

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/709 (32%), Positives = 371/709 (52%), Gaps = 53/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              + ++ L Q +  ++  Y+    P + DSEYD L      I    P+L      + P 
Sbjct: 2   NIEQRVTELHQLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIEREHPELKTD---DSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG    +  KV H  P LSL   ++ EDL  F  R+       +   + + +E KID
Sbjct: 59  VRVGGTPVSAFEKVDHDTPMLSLGNAFSEEDLLAFDKRVKD-----EVGEVEYMVELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  ++++Y  G FV    RGDG +GE+++  ++ I  IP  LS  +P   EVRGE Y+ +
Sbjct: 114 GLAVSLKYVDGVFVQGLTRGDGTTGENITQNLKTIHAIPLTLS--VPLTFEVRGEAYMPR 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             FLALN     VG    ANPRNAA+G LR+L+      R L+ F++ +    E+ A+ Q
Sbjct: 172 KSFLALNAYREKVGEPLAANPRNAAAGSLRQLDSKLTAKRKLDIFLYSVNDLRELNAQSQ 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L K+  +GF  N+  +       +  Y       R+ L YDIDG+V KV++ S Q +
Sbjct: 232 SEALDKLDEIGFKTNHERKLCRNMEEVFEYIKYWTEKRNDLAYDIDGIVIKVNDLSKQDE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SP+W I++KF  ++  T L DI++ IGRTG++TP A LEPV + G  +  A+LH
Sbjct: 292 LGFTAKSPKWAIAYKFPAEEVITTLNDIELSIGRTGVVTPTAILEPVKVAGTTVGRASLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I+            +DIR+GD V++++AGE+IP+VV ++++ R    +P++ P  C
Sbjct: 352 NEDLIR-----------EKDIRIGDSVVIRKAGEIIPEVVRVVLDRRPEGTKPYNMPEIC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C   +VR           A RC     C A+ +E + HFVSR A NI+GLG++ ++  
Sbjct: 401 PSCGHELVRIEGE------VALRCINP-KCDAKLVEGVIHFVSRTAMNIDGLGERIVEVL 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           +  +     I   AD++TL+R +  +  ++      G+  V  L  +I   +  SLER +
Sbjct: 454 YNEDI----INDVADLYTLERERLLTLERM------GEKKVDKLLAAIEASKTNSLERLL 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRH+GA+ +  LA+ + +  N        +           ++  +G+ +AQ++V 
Sbjct: 504 FGLGIRHLGAKASMVLAREFGTMDNLKNATVETL----------TQIDDIGEKMAQSLVT 553

Query: 615 FYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + QN   I  +E L +         + + +  +      K +V TG L  + R +A + +
Sbjct: 554 YLQNEDIINLLEKLEQYGVNMRYTGVTKDDIELHPVFGEKTIVLTGKLTIMSRSEATKAL 613

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           T LGA V+  +++KTDI+I G + GSK EKA  LG+ +  E+  +  L+
Sbjct: 614 TNLGAKVTNSVTKKTDIVIAGSDAGSKREKADSLGIPVWTEQMMVDALR 662


>gi|332519658|ref|ZP_08396122.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4]
 gi|332044217|gb|EGI80411.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4]
          Length = 665

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/706 (32%), Positives = 374/706 (52%), Gaps = 49/706 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E+  L QE+  H+  YY    P I D ++D   +   A+  A P+     D N P  +
Sbjct: 4   KQEIEQLRQELREHNYNYYVLDNPTISDYDFDIKLKELQALEEAHPEFF---DANSPTLR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+  +   V H     SL+  +++EDL+ + TRI +      D  I +T E K DG 
Sbjct: 61  VGGEVTKNFNTVVHEHRMYSLDNSYSLEDLKDWETRIKKLV----DGDISYTCELKYDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  + A  RGDG  G++V+A I+ I ++P  L  + P   ++RGE+ +    
Sbjct: 117 SISLTYENGNLLKAVTRGDGFQGDEVTANIKTIKSVPLQLKGDYPAKFDIRGEIVLPFKG 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           FL +N+E +A G +PY NPRN ASG L+  +  ++  R L   ++ L   + +  + Q+E
Sbjct: 177 FLKMNEERVANGEEPYKNPRNTASGSLKLQDSGEVAKRPLECLLYNL-TGTNLGVENQFE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R +GF V N  R   T   +  + N   + R  LPY+ DG+V KV+    Q++LG
Sbjct: 236 SLEKARKMGFKVPNEARLCKTIDEVFKFINHWDTERHNLPYETDGVVVKVNSLYQQEELG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW +++KF  +Q ST L +I  Q+GRTG +TPVA LEPV++ G ++  A+LHN 
Sbjct: 296 YTSKAPRWAMAYKFKAEQVSTILKEITYQVGRTGAITPVANLEPVDLAGTVVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+ D V V++ GE+IPK++ + + +R  D++P  + + CP 
Sbjct: 356 DQIEKL-----------DIRINDTVFVEKGGEIIPKIIAVDLTQRLQDSKPTKYATHCPE 404

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQ+ + R          A H C     C  Q + R++HF+SR A +IEGLG + +    K
Sbjct: 405 CQTPLERLEGE------AKHFCPNYNGCEPQVIGRIQHFISRKAMDIEGLGGETVGLLVK 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++TL + Q     ++       + S  NL + I   + IS ER +F+
Sbjct: 459 E----GLITNYADLYTLTKAQILPLERMA------EKSAENLINGIEASKQISFERVLFA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           +GIR VG  +A+ LAK+Y S +   Q               L +V  +G  IA+++V F+
Sbjct: 509 IGIRFVGETVAKKLAKHYKSIEALEQA----------SIEDLEKVDEIGIKIAESVVSFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  N   ++ L           EK  +  ++++ K  V +G   K+ R++ ++ +   G
Sbjct: 559 ASEENRNIIKRLKNVGVQLEISAEKLANQTNKLKGKSFVVSGVFTKVSRNELKKLIEDNG 618

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
               + +S KTD ++ GD  G SK EKA++L + ++ E++FL ++ 
Sbjct: 619 GKNVSSISSKTDFVVAGDKMGPSKKEKAEKLNISLITEDEFLQMVD 664


>gi|289550377|ref|YP_003471281.1| DNA ligase [Staphylococcus lugdunensis HKU09-01]
 gi|289179909|gb|ADC87154.1| DNA ligase [Staphylococcus lugdunensis HKU09-01]
          Length = 667

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/708 (33%), Positives = 378/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   ++ +   YY    P + DSEYD L      I    P+   +   + 
Sbjct: 1   MDNLQHRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTT---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDL++F  RI           + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVRHDTPMLSLGNAFNEEDLKRFDQRIRDHI-----GEVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE GKFV    RGDG +GED++  +R I  IP  L L  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGKFVQGLTRGDGTTGEDITENLRTIHAIP--LKLKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F++LN +      +P+ANPRNAA+G LR+L+      R L+ F++ +   S+  A 
Sbjct: 171 PRASFMSLNKQKEKNNEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFSDFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q + L ++  LGF  N      +   G+++Y  +  + R +L YDIDG+V KV++ + Q
Sbjct: 231 TQSDALDELDRLGFKTNKERECVSDIDGVLAYIEKWTAKRESLAYDIDGIVIKVNDLAQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  TRLLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVTRLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I+  R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIERRPNDAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C  ++VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHKLVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++ E     I+  ADIF L         ++      G   V NL  +I+K ++ SLE 
Sbjct: 453 QLYQHE----LIKDVADIFYLTEEDLLPLERM------GKKKVENLLQAIDKAKSNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+GA+ +  LA+ Y + +       + +          I +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGAKASYVLAEKYETIERLLTVTEDEL----------ISIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +       +      +   E     E ++K +V TG L+++ R +A +
Sbjct: 553 VTYLENEDIQSLISKLANKDVNMTFKGVKISELAGHPEFQDKTIVLTGKLEQMTRKEAAD 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TD++I G++ GSKL KAQ+ G +I +E  F+ 
Sbjct: 613 WLQLQGAKVTNSVTKNTDLVIAGEDAGSKLTKAQKFGTEIWSESDFIS 660


>gi|253565642|ref|ZP_04843097.1| DNA ligase [Bacteroides sp. 3_2_5]
 gi|251945921|gb|EES86328.1| DNA ligase [Bacteroides sp. 3_2_5]
          Length = 665

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/708 (32%), Positives = 365/708 (51%), Gaps = 52/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D L R    +    P+    +D N P  
Sbjct: 3   VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKALN----EDFEICCEMKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
           T I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL   N PE+ E+RGE+ +  
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F ALN E  A     +ANPRNAASG L+  N   +  R L+ +++ L     +   G 
Sbjct: 176 EVFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    Q+ 
Sbjct: 235 YENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + C
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I   AD++ L       T  I  +   GD S  N+   I + + +  ER I
Sbjct: 458 YR----LGLIHDTADLYRLT------TDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVI 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D  +LI +  +G+ IA++I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSFKDIEEL----------ENADLETLINIDEIGEKIARSILN 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ N  N   V  L K     + R E+++S    ++  + +V +G      R + ++ + 
Sbjct: 558 YFANESNRKLVGRL-KTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 617 KHGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|90408119|ref|ZP_01216289.1| DNA ligase [Psychromonas sp. CNPT3]
 gi|90310805|gb|EAS38920.1| DNA ligase [Psychromonas sp. CNPT3]
          Length = 667

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/705 (35%), Positives = 386/705 (54%), Gaps = 48/705 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L +++  ++  YY   +P I D++YDA+ ++  AI    P L      N P  K+G
Sbjct: 6   QVKKLTEQLEEYNYQYYVLDEPSISDAQYDAVFQQLKAIESEHPHLLHE---NSPTQKVG 62

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+      +V H +P LSL+ ++N E L+ FI R       K    + F +EPK+DG  +
Sbjct: 63  GQALSKFEQVAHEMPMLSLDNMFNDEALQAFIQRASD----KSIKEVAFCIEPKLDGLAV 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           +I YE G  V AA RGDGH+GE+V+A ++ I  IP  L   NIP+ +EVRGEV++ +  F
Sbjct: 119 SIIYEHGLLVQAATRGDGHTGENVTANVKTISNIPLRLRGDNIPQRLEVRGEVFMPQLGF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             LN  + A+G K + NPRNAA+G LR+L+      R L F+ + +G         QY  
Sbjct: 179 DKLNARLEALGEKSFVNPRNAAAGSLRQLDSKIAASRPLAFYCYAVGVFDGDLENSQYAR 238

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +Q+++  G PV++ + +       ++YY  + + R +L Y IDG+VYKVD+  LQ +LG 
Sbjct: 239 MQQLKGWGLPVSSEISRVQGLDACLAYYRNIVTQRESLGYAIDGVVYKVDDIDLQDKLGF 298

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            AR+PRW  ++KFA ++A TR+ +++ Q+GRTG +TPVA+L PV +GG  ++NATLHN+D
Sbjct: 299 VARAPRWASAYKFAAEEAITRVENVEFQVGRTGAITPVAKLRPVFVGGVTVSNATLHNQD 358

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPSFCPI 436
            I  L            I +GD V+V+RAG+VIP+V  +++  R     Q   FPS CP+
Sbjct: 359 EIARL-----------GILIGDDVVVRRAGDVIPQVARVLLENRDLSQTQEIHFPSVCPV 407

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S + R +        A  RCTGGL C+AQ+ E +KHF SR A +I+GLG + +     
Sbjct: 408 CSSALERIVGE------ATIRCTGGLYCAAQRKEAIKHFASRKALDIDGLGNKLVALLVD 461

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I+ PA +F L         +I  +   G VS   + +S+   +  +L RF+++
Sbjct: 462 HD----LIKDPAQLFDLT------LAQISTLPRMGSVSAKKVLNSLQVSKKTTLSRFLYA 511

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +LA +Y +           +            V  VGDI+A+ I  F+
Sbjct: 512 LGIREVGEATANNLAMHYKNLSALQDAGIEALK----------EVADVGDIVAKNIYYFF 561

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + P N+  V   L   V     +  ++ +  +  +  V TG+   I R   +  +  LGA
Sbjct: 562 RQPSNLQVVNRLLEAGVHWPDIQAVESTTQTLVGQTFVITGSFANISRSDIKSELQALGA 621

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            VS  +S+KT+ +I G   GSKLEKAQ L + IM+E+Q   LL +
Sbjct: 622 KVSGSVSKKTNTLIAGTAAGSKLEKAQALDINIMDEQQLFTLLNK 666


>gi|317495223|ref|ZP_07953593.1| DNA ligase [Gemella moribillum M424]
 gi|316914645|gb|EFV36121.1| DNA ligase [Gemella moribillum M424]
          Length = 663

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/709 (34%), Positives = 399/709 (56%), Gaps = 50/709 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  ++E+  L   ++ +   YY    P I D+EYD L ++ + +   +P+       N 
Sbjct: 1   MEHIKEEIFKLVALLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEQEYPEFILD---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +     KV H +P LSL   ++IEDLR F +RI +      D+SI +  E K
Sbjct: 58  PTQRVGDRVLDEFEKVIHKVPMLSLSNTFSIEDLRDFDSRISKL---SSDDSIEYICELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+I YE GK V AA RGDG  GE+V+  I+ I +IP+ L     +  EVRGEVY+
Sbjct: 115 IDGLAISINYENGKLVSAATRGDGMVGENVTENIKTIFSIPKTLKTK--KSFEVRGEVYL 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K  F  LN E        +ANPRNAA+G LR+L+      R L+ F++ +     I   
Sbjct: 173 PKKSFELLNKEREENNEVLFANPRNAAAGSLRQLDSKITAKRRLSAFIYSVVGDENI--N 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   L     +G PVN   +   T   +V Y    +  +  LPY+IDG+V KV+ +SLQ
Sbjct: 231 SQKMALTVAADVGLPVNPNFKLCKTIDEVVDYIMYWEEHKQDLPYEIDGIVIKVNSYSLQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW  ++KF E++ +T+LLDI++ +GRTGI+TPVA L P+NI G+ ++ A+
Sbjct: 291 EEIGSTQKSPRWATAYKFPEEELATKLLDIELSVGRTGIITPVAVLNPINISGSTVSKAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D I  L           DI +GD V+VK+AGE+IPKVV ++   R  +++ +  P+
Sbjct: 351 LHNKDIIDEL-----------DIHIGDMVVVKKAGEIIPKVVRVVEELRLANSEKYVMPN 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C+S+        T +     RC     C  Q + ++ HF SR+A NIEGLG + + 
Sbjct: 400 ICPSCESKTF------TKEGDPFTRCLNP-DCPEQNIRKIIHFASREALNIEGLGDKVVA 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++       I+   D+F+L R +     ++      GD SV NL ++I   +  SL++
Sbjct: 453 TLYEK----GIIKHTIDLFSLDRNKLVELERM------GDKSVDNLLNAIENSKQSSLDK 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGI +VG +  + LA+YY +  NF++   + +          + +P +G I A++I
Sbjct: 503 VIFALGILNVGKKAGKILAEYYKNLTNFSKATVDEL----------LELPDIGLITAESI 552

Query: 613 VEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           V++  N  N+  +  L++  ++P      KN+ +    K +V TG L ++ R++A+EY+ 
Sbjct: 553 VDYLSNDNNLRFINELIEIGMNPQYEIQNKNIDNIFSGKTIVLTGKLVELTRNEAKEYLE 612

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + GA V+  ++ KTD +I G+  GSKL KA+QLG+++++E++F+ ++++
Sbjct: 613 RFGAKVTGSVTSKTDYVIAGEKAGSKLAKAEQLGIQVLSEDEFIDIMKE 661


>gi|294102358|ref|YP_003554216.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261]
 gi|293617338|gb|ADE57492.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261]
          Length = 684

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/721 (33%), Positives = 388/721 (53%), Gaps = 45/721 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +A + + +L +EI+ H   YY    P I D EYDAL R   ++  AFP+    +DP
Sbjct: 1   MDRREALQRIEALREEINRHAHLYYVLDTPEIADHEYDALFRELASLEEAFPEF---DDP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P +++GG       KV H  P LSL+   + E++  F  R++         ++ +  E
Sbjct: 58  DSPTHRVGGAPLDRFEKVIHESPLLSLDNALSKEEVWSFCDRVFSGLGL---GNLEYLCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE G F+  A RGDG  GEDV+A +R I ++P  L   +   +EVRGEV
Sbjct: 115 LKIDGLAVSLIYEDGVFIRGATRGDGLVGEDVTANLRTIRSLPLRLREKVSGRMEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            +++  F ALN E    G   +ANPRNAA+G LR+L+ +   +R L+ F++ +    E  
Sbjct: 175 LMTREQFAALNQEREEGGELLFANPRNAAAGSLRQLDSSITASRKLSIFLYYVAHPQEHG 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q E+L  ++ LGFPV +     +T   I ++  E +  R +LPY  DG+V K+++  
Sbjct: 235 LRTQQEVLHWLQHLGFPVQSAWGVCSTRQDIDAFIEEWREKRLSLPYSTDGVVLKINQVD 294

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             + LG  A++PRW I+ K+  ++ ++R+LDI++ +GRTG LTPVA LEPV++ G ++  
Sbjct: 295 FWEDLGTTAKAPRWAIAFKYPPEEKTSRILDIEVSVGRTGTLTPVAHLEPVHLAGTVVRR 354

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+ D+V+V++AGE+IP+VV ++   R  +   F  
Sbjct: 355 ASLHNEDEIRR-----------KDIRIKDKVVVRKAGEIIPEVVRVLTEGRDGNEVEFQM 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S V+R           A RC    +C AQ  E + HF SR A +I GLG + 
Sbjct: 404 PDTCPACGSHVMRIPGE------VALRCPNRASCPAQLREGIAHFASRAAMDIRGLGDKL 457

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +      +     IR  AD++TL+R    S  ++      G+ S +NL ++++  +N  L
Sbjct: 458 ITQLVDRQ----LIRNMADLYTLKREDLLSLDRM------GEKSASNLLEALSVSKNRFL 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              I +LGIR VG ++A  LA  + S    +      ++           +  VG  IA 
Sbjct: 508 SNLITALGIRLVGKKVAEILADRFHSLDALSSAQEEGLS----------SIDGVGPKIAA 557

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I  F+ +  N   +  L       +      +V   +E+++ VFTG LQ + R +A+  
Sbjct: 558 SIKAFFDDEANKEMISRLKDAGVRVVEEKSMSSVEGPLEDQRFVFTGELQSMSRGEAEAL 617

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           V  LG   S+ +S+KT I++ G   GSKL+KA++LG+ I+NEE+FL +++ Y      H 
Sbjct: 618 VKNLGGASSSSVSKKTSIVVAGPGAGSKLQKARELGITIINEEEFLQMIRPYERVFSKHT 677

Query: 730 D 730
           D
Sbjct: 678 D 678


>gi|189219712|ref|YP_001940353.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4]
 gi|254781365|sp|B3DWU2|DNLJ_METI4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189186570|gb|ACD83755.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4]
          Length = 689

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/720 (31%), Positives = 375/720 (52%), Gaps = 49/720 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           + K++   +++L  E+ +K    L + I  +D  YY  + P++ D EYD L    + +  
Sbjct: 14  VNKKKAPSLDSLGYEEIKKRHDELVKLIRKYDYAYYVEAHPLVSDQEYDNLYHELETLEK 73

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L     P+ P  +IG        +VTH IP LSLE  ++ E+L  F+ RI R    
Sbjct: 74  LHPELI---TPDSPTQRIGETPLSGFSQVTHEIPMLSLENTYSKEELFAFLERIKRALP- 129

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
                I FT+EPKIDG  I+  Y+ G F   A RG+G  G+D++  ++ I ++P  L + 
Sbjct: 130 --GKKISFTVEPKIDGVSISAVYKNGLFSLGATRGNGTVGDDITQNLKTIRSLPLRLETP 187

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNF 238
           + PE +EVRGE Y+S  DF  LN +    G+  +ANPRNA +G L++L+P  +  R L  
Sbjct: 188 DPPEYLEVRGEAYMSPKDFERLNAQREKEGKVLFANPRNATAGSLKQLDPRVVAERPLAV 247

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             +G GK   +  K Q E L  ++ +G P+       +  + +     ++   R+ LPY 
Sbjct: 248 VFYGAGKLVGMKCKTQEEWLNFLKKIGLPIPIVFWVCSNENEVYEAIGKLNECRNQLPYP 307

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DG   KV+E+     LG  A++PRW  ++K+  ++A TRL ++  Q+GR+G +TPVA +
Sbjct: 308 TDGAAVKVNEWEYYSLLGYTAKAPRWAFAYKYGAERAKTRLNNVIFQVGRSGTITPVAEM 367

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV + G  ++ ATLHN D +K L           D+++GD V +++AGEVIP+VV + +
Sbjct: 368 DPVFLSGTTVSRATLHNFDQVKRL-----------DVKIGDVVYLEKAGEVIPEVVGVDL 416

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           N+R    +    P FCP C  ++  +            RC     C AQ  ER+ HF  R
Sbjct: 417 NQRRGTEKEIVPPEFCPSCGEKLSWE--------GIFLRCENE-NCPAQLKERILHFAQR 467

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +A +I+GLG+  +D           ++  ADI+ L            N+   G  S  NL
Sbjct: 468 NAMDIQGLGESLVDQLVDK----GIVKDVADIYDLDEETLV------NLDRMGKKSAQNL 517

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I + +   L R IF LGI H+G + +  LA+Y+ +    +      +          
Sbjct: 518 LKAIEESKKKDLSRLIFGLGIPHIGQKASEDLARYFGTMDKLSHATEEEL---------- 567

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           + +P +G+I+A++IV +++   N   +E L K+    +    +  S  +  K  V TGTL
Sbjct: 568 LNLPFIGEIMARSIVNYFRKEANRRRLEKLRKKGLNFVSTLSQASSGTLSGKTFVITGTL 627

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + +   AQ+ +   G  VS  LSRKT  ++VG +PGSKL++A++LG+ ++NE++ L +L
Sbjct: 628 SEPRESIAQKII-SKGGRVSNSLSRKTSYLVVGSDPGSKLQEAKKLGIPLINEQELLEML 686


>gi|301163404|emb|CBW22954.1| putative DNA ligase [Bacteroides fragilis 638R]
          Length = 665

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/708 (32%), Positives = 365/708 (51%), Gaps = 52/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D L R    +    P+    +D N P  
Sbjct: 3   VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKALN----EDFEICCEMKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
           T I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL   N PE+ E+RGE+ +  
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F ALN E  A     +ANPRNAASG L+  N   +  R L+ +++ L     +   G 
Sbjct: 176 EVFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF ++  + +  T   +  + N     R  L    DG+V KV+    Q+ 
Sbjct: 235 YENLQEAAKWGFKISPLMHKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + C
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I   AD++ L       T  I  +   GD S  N+   I + + +  ER I
Sbjct: 458 YR----LGLIHDTADLYRLT------TDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVI 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D  +LI +  +G+ IA++I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSFKDIEEL----------ENADLETLINIDEIGEKIARSILN 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ N  N   V+ L K     + R E+++S    ++  + +V +G      R + ++ + 
Sbjct: 558 YFANESNRKLVDRL-KTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 617 KHGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|317489959|ref|ZP_07948451.1| DNA ligase [Eggerthella sp. 1_3_56FAA]
 gi|316910957|gb|EFV32574.1| DNA ligase [Eggerthella sp. 1_3_56FAA]
          Length = 708

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/745 (31%), Positives = 377/745 (50%), Gaps = 61/745 (8%)

Query: 1   MKKRQLIPIEALSIEQA----RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCD 56
           M   Q   ++  ++ +A       + +L +EI +H   YY    P I D+ +D+L R   
Sbjct: 1   MADEQQTLLDEQALAEATSDPAARIDALRREIEHHSYLYYANDAPEISDAAFDSLMRELR 60

Query: 57  AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR 116
            +  A P+L    DP+ P  ++GG +      V H+    SL+   ++++L  +I R+  
Sbjct: 61  ELEAAHPELI---DPSSPTQRVGGYVGEQFAPVRHARRMYSLDNAMDLDELDAWIERVTE 117

Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
            + +     +    E KIDG+ I + YE G+ + AA RGDG +GEDV+A +R +  +P  
Sbjct: 118 AFGRM----VPVVCELKIDGSSIALTYEGGRLMRAATRGDGTTGEDVTANMRTVKDVPLR 173

Query: 177 LSL-------NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229
           L         +    +E+RGEVY+ K+ F ALN   +  G++ +ANPRNAA+G LR+ +P
Sbjct: 174 LREGALGGLRDADAPVELRGEVYMPKSSFDALNAAAVENGKQAFANPRNAAAGSLRQKDP 233

Query: 230 TDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288
           +    R L+ F++ +     + A+GQ+E+L  +R  GF VN  V    T   + ++    
Sbjct: 234 SITANRDLSTFIYAVADERALNAEGQWELLAWLREAGFHVNPDVELCQTREEVHAFCERA 293

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
            + R  LPY+IDG+V KV+ F+ Q+ +G  AR+PRW ++ KF  ++ +T L DI +Q+GR
Sbjct: 294 VARREDLPYEIDGVVVKVNSFAQQESMGYTARAPRWAVAFKFPPEEKTTLLRDITVQVGR 353

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG LTPVA L+PV + G+ +  ATLHNED ++            +D+RVGD V+V++AG+
Sbjct: 354 TGKLTPVAELDPVVVAGSTVARATLHNEDEVQR-----------KDVRVGDTVIVRKAGD 402

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+V+  ++  R  DA+ +  P  CP C S V+R+            RC   + C AQ 
Sbjct: 403 VIPEVLGPVLALRPADAEAWQMPRTCPSCGSPVIREEGE------VDFRCI-SIDCPAQA 455

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-----K 523
           LERL H+ SR A +I+G+G++ +    +S      +   AD +TL   + +        K
Sbjct: 456 LERLLHWASRGAMDIDGMGEEIVSRLVESGR----LSDVADYYTLDEVELSLLDMGRVNK 511

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
               +  G      L  +I++ R     R +F LGIRHVG  IA  LA  Y S +   + 
Sbjct: 512 DGEPIRLGSTVAKKLVAAIDESRTRPFARALFGLGIRHVGKTIAELLAAAYPSIEALMEA 571

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHE 640
               +A           +  VG  IA++   F + P N   +E L               
Sbjct: 572 SEEDLAA----------IDGVGPKIARSAYLFLRTPDNAAVIERLRSHGVALADKAADEG 621

Query: 641 KNVSSEIENKKLVFTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
           + +   +     V TG+L    + R +A   +   GA VS  +S+KT  ++ G+  GSK 
Sbjct: 622 EQLPQTLAGLTFVLTGSLVESGMTRDEAGAALKARGAKVSGSVSKKTSFVVAGEAAGSKY 681

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNT 723
           +KA  LGV +++E   L +L+    
Sbjct: 682 DKAVALGVPVLDEAALLRILETGEA 706


>gi|294776463|ref|ZP_06741938.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510]
 gi|294449660|gb|EFG18185.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510]
          Length = 665

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/706 (33%), Positives = 363/706 (51%), Gaps = 50/706 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +              E K DGT 
Sbjct: 62  GSDINKNFTQVVHKYPMLSLANTYSETEVTEFYDRVKKSLN----EDFEICCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    
Sbjct: 118 ISLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L     +   G YE
Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG
Sbjct: 237 NLKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+P+ + G ++  A+LHN 
Sbjct: 297 FTAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+GL           D+ +GD V V++ GE+IPK+V +  + R        F + CP 
Sbjct: 357 DIIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S++VR          AA+ CT   AC  Q   +++HF+SR A NI+GLG + +D F++
Sbjct: 406 CGSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQ 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  IR  AD++TL+      T+ I N+   G+ S  N+   I + + +  ER +F+
Sbjct: 460 E----GLIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ +AK + S    A    + + H          V  +G+ IAQ+I+ ++
Sbjct: 510 LGIRFVGETVAKKVAKSFKSMDALADASLDNLIH----------VDEIGEKIAQSILLYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            NP+N   +E L           E       ++  K +V +G      R + +E + + G
Sbjct: 560 ANPKNRDIIERLRVAGVRLEADEEDTSEHTDKLAGKSIVISGVFAHHSRDEYKELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                 +S KT  I+ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 620 GKNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|297583057|ref|YP_003698837.1| DNA ligase [Bacillus selenitireducens MLS10]
 gi|297141514|gb|ADH98271.1| DNA ligase, NAD-dependent [Bacillus selenitireducens MLS10]
          Length = 668

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/710 (34%), Positives = 386/710 (54%), Gaps = 53/710 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  +K + +L + ++ +   YY   +P + D+EYD L +  + +  A P+L RS   + P
Sbjct: 5   QDVQKRIDTLTETVNDYAHHYYVLDQPKVPDAEYDRLLQELEELEAAHPELKRS---DSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE      KV H IP LSL   +N E+LR F  R+             +++E KI
Sbjct: 62  SERVGGEPLDHFRKVQHDIPMLSLSNAFNEEELRDFDRRVRDGLGVNP----TYSVELKI 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  IT++YE G+FV  A RGDG +GED++  ++ IP+IP  L  ++   +EVRGE ++ 
Sbjct: 118 DGLAITLKYEAGEFVLGATRGDGTTGEDITRNLKTIPSIPLKLKESV--TLEVRGEAFMP 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           K  F  LN+     G   +ANPRNAA+G LR+L+P     R L+ FV+ +G+        
Sbjct: 176 KASFNRLNEAREEKGEALFANPRNAAAGSLRQLDPKIAAKRNLDMFVYSVGQIEGKTIDS 235

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  +  LGF +N   +  N    +V Y N     R  L Y+IDG+V KVD    Q+
Sbjct: 236 HTETLDYVSKLGFKINPEAKHCNGIEEVVDYVNSWLDRRGDLDYEIDGIVIKVDSLDHQE 295

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  A+SPRW  + KF  ++  T+L+DI++ IGRTG++TP A LEPV++ G  +  A+L
Sbjct: 296 ELGFTAKSPRWATAFKFPAEEVVTKLIDIELSIGRTGVVTPTAILEPVSVAGTTVQRASL 355

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED I+            +D+++GDRV +K+AG++IPKVV+++  +R    + FS P  
Sbjct: 356 HNEDLIR-----------QQDVKIGDRVTIKKAGDIIPKVVNVLTEQRDGSEEDFSMPEH 404

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +VR           A RC     C AQ  E L HF SRDA NI+GLG++ +  
Sbjct: 405 CPACESELVRIDGE------VALRCVNP-ECPAQIREGLIHFASRDAMNIDGLGERVITQ 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +R  AD++ L++    +  ++      G+ S TNL ++I   ++ SLE+ 
Sbjct: 458 LHSRE----LVRNVADLYRLEKEAIMALERM------GEKSATNLVEAIEATKSNSLEKL 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR VG++ A++LA ++ +     +           D  +LI V  +GD +A +IV
Sbjct: 508 LFGLGIRFVGSKAAKTLAMHFETMDALMEA----------DKEALIAVDEIGDKMADSIV 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             ++ P     + AL                 +   S +  K +V TG++++  R +A+ 
Sbjct: 558 MAFEQPGMKHLIGALKDLGVNMTYTGPKRITAEESDSPLAGKTVVITGSMEQYSRKEAKT 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            V   G  V+  +S+KTD++I G+  GSKL+KA +LG+++ +E +F+  L
Sbjct: 618 EVEARGGKVTGTVSKKTDLVIAGEKAGSKLDKANELGIEVWDEARFIDEL 667


>gi|57867376|ref|YP_189011.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A]
 gi|81674000|sp|Q5HN30|DNLJ_STAEQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57638034|gb|AAW54822.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A]
          Length = 665

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/708 (34%), Positives = 381/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+   +   + 
Sbjct: 1   MQGVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKST---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI     K     + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++      G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   + +          I +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTESEL----------IEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E      +      I   E     +   K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+ 
Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660


>gi|223044011|ref|ZP_03614051.1| DNA ligase, NAD-dependent [Staphylococcus capitis SK14]
 gi|222442554|gb|EEE48659.1| DNA ligase, NAD-dependent [Staphylococcus capitis SK14]
          Length = 667

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 377/714 (52%), Gaps = 53/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   ++ +   YY    P + DSEYD L      I    P+   +   + 
Sbjct: 1   MKDLQSRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIDIEEKHPEYKTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y+ G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYQNGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRQSFMNLNAEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFDAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   LQ++  LGF  N    +     G++ Y  +    R +L YDIDG+V KV++   Q
Sbjct: 231 TQSGALQELDDLGFKTNQERERVADIDGVLDYIEKWTEKRESLSYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  ++LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVSKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPKDAKTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 LCPSCDHELVRIEGE------VALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++E     I+  ADIF L+        ++ N        V NL  +I K ++ SLE 
Sbjct: 453 QLYENE----LIKDVADIFYLKEEDLLPLERMGN------KKVENLLAAIEKAKDNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLNVTEEEL----------VAIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +      I   E     E   K +V TG L+++ R +A +
Sbjct: 553 VTYLENQDIRALIQKLKDKNVNMNYKGIKTTEIEGHPEFNGKTIVLTGKLEQMTRSEATQ 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++   GA V++ +++ TDI+I G + GSKL KA++ G +I  E++F    ++ N
Sbjct: 613 WLEMQGAKVTSSVTKSTDIVIAGADAGSKLAKAEKFGTEIWTEDEFAKKQKELN 666


>gi|57650655|ref|YP_186789.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus COL]
 gi|81694155|sp|Q5HEL8|DNLJ_STAAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57284841|gb|AAW36935.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus COL]
          Length = 667

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELNKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIHD-----------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L         ++          V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +  +   I   +     E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|21673293|ref|NP_661358.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS]
 gi|81791793|sp|Q8KF74|DNLJ_CHLTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21646383|gb|AAM71700.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS]
          Length = 674

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/716 (31%), Positives = 370/716 (51%), Gaps = 51/716 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +A++E+  L  EI  H+  YY  +KP I D E+D L +R   +   FP+L     P
Sbjct: 1   MDKAKAQQEIGKLRAEIERHNRLYYLEAKPEISDFEFDKLLKRLIMLEKEFPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      V H  P LSL   ++I ++  F  R+ +    +   +  +  E
Sbjct: 58  DSPSQRVGGGITKEFPTVVHRDPMLSLSNTYSIAEVADFCNRVEKLVAAEGGGTPEYVAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--------SLNIPE 183
            K DG  I++ Y  G  V  + RGDG  G++++A +R IP+IP  L           +  
Sbjct: 118 LKYDGVAISLLYRDGLLVCGSTRGDGRQGDEITANLRTIPSIPLRLEMPDLPLFGTALSG 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            IEVRGEVY+ K+DF  LN+E      + +ANPRNA +G L+  +  ++ R    FV   
Sbjct: 178 EIEVRGEVYMRKDDFERLNEERPE--EERFANPRNATAGTLKLQDSAEVARRRMSFVAYY 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            K  +  A    + L++++ +GF      +       I  +  E    R TLPY+ DG+V
Sbjct: 236 LKGYDGEAPTHLKRLEQLKSMGFMTGAAAKLCKGMDEIADFIAEWSEKRWTLPYETDGVV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K++E SL ++LG  A+SPRW I++K+  +QA T L  +  Q+GR G +TPVA L+P  +
Sbjct: 296 LKLNEVSLWERLGATAKSPRWAIAYKYPAQQAKTVLQGVVFQVGRLGTITPVAELKPTRL 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G++++ +TLHN D IK L            +R+GD V+++++GEVIPKVV ++++ER  
Sbjct: 356 AGSIVSRSTLHNFDEIKRL-----------GVRIGDHVMIEKSGEVIPKVVSVVLDERPA 404

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +      PS CP+C +R+ R              C     C AQ+  R+ HF SR+A +I
Sbjct: 405 ETAEIEVPSECPVCGTRLERPEGE------VNWYCPNEEGCPAQKRGRILHFASRNALDI 458

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           + LG+  +            +    D+++L + Q     ++         S  N+ D++ 
Sbjct: 459 QNLGESLVTQLVDR----GLVSDAGDLYSLTQEQLAGLDRMAA------KSAQNVLDALE 508

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +  S  R +F+LGIRHVGA  AR LA    S     +     +A           VP 
Sbjct: 509 KSKKQSYARLLFALGIRHVGAATARELAHACPSIDRLREMDEEALAA----------VPD 558

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           +G +IA +I +F+  P     ++ L +   P   G  +  V++  E + ++FTG L++  
Sbjct: 559 IGPVIAASIRDFFAKPWVQAMLQKLAEAGLPMQAGEEKALVNNNFEGQSVIFTGALERHV 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+E V + G  + + +S+KT +++ G   GSKLEKA +LGVK+++E++F  +L
Sbjct: 619 RQEAEEMVRERGGRIVSSVSKKTTLVVAGKEAGSKLEKAIKLGVKVIDEDEFERML 674


>gi|315502322|ref|YP_004081209.1| DNA ligase, nad-dependent [Micromonospora sp. L5]
 gi|315408941|gb|ADU07058.1| DNA ligase, NAD-dependent [Micromonospora sp. L5]
          Length = 717

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/716 (31%), Positives = 362/716 (50%), Gaps = 43/716 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+  ++L QE++ H   YY    P + D+E+D   R  +A+   +P L     P+ P  
Sbjct: 32  ARERHATLSQELTEHQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPAL---RTPDSPTQ 88

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     VTH+   LSL+  +  E+L  +  R+ R         + +  E K+DG
Sbjct: 89  RVGGTFSTDFTPVTHAERMLSLDNAFADEELAAWSERVER----DAGGPVPYLCELKVDG 144

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIEVRGEV 191
             I + YEKG+ V AA RGDG +GEDV+A +R+I  +P  L+      ++P++IEVRGE+
Sbjct: 145 LAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIKGVPARLTPAGDFPDVPDLIEVRGEI 204

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G  +   
Sbjct: 205 YFPVAAFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGVGARTGFR 264

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    ++  G P ++  R  +   G+  Y       R  + ++IDG+V KVD  S
Sbjct: 265 PAAQSESYAALKAWGLPTSDRWRVVDDLAGVAEYIAYYGRHRHDVEHEIDGVVVKVDPVS 324

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I+ K+  ++ +T+LLDI++++GRTG +TP A L+PV + G+ +  
Sbjct: 325 IQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRAVLQPVRVAGSTVAY 384

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   ++            + + +GD V++++AG+VIP+V+  +V  R  DA+PF  
Sbjct: 385 ATLHNAREVER-----------KGVLIGDTVVLRKAGDVIPEVLGPVVELRPADARPFVM 433

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +         +     RC  G AC  Q  ER+ +  SR   +IE LG++ 
Sbjct: 434 PTTCPACGTPL-----APAKESDVDIRCPNGRACPGQIRERVFYLASRKVLDIEVLGEKG 488

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 ++     I    D+F L   Q + +    N  G    + T L D++ + +   L
Sbjct: 489 AAALLDAQI----ITNEGDLFQLDAEQLSRSPFFVNKDGSLGSNATKLLDNLAEAKERDL 544

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LA+++ S           ++           V  VG  IA 
Sbjct: 545 WRVLVALSIRHVGPTAAQALARHFRSVAAIEAAGEEELS----------SVDGVGPTIAA 594

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ E++    +   V    +                ++   +V TGTL    R +A E +
Sbjct: 595 SVKEWFAVDWHRDVVRKWAEAGVRMAEEAADEGPRPLDGITVVVTGTLGGFSRDQAAEAI 654

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
              G  V+  +S+KT  ++VGDNPGSK +KA  L + I++E+ F  LL       R
Sbjct: 655 QVRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKLPILDEDGFRVLLDSGPEAAR 710


>gi|146301217|ref|YP_001195808.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101]
 gi|190359257|sp|A5FE87|DNLJ_FLAJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146155635|gb|ABQ06489.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101]
          Length = 668

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/709 (30%), Positives = 371/709 (52%), Gaps = 48/709 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++ + +L +E++ H+  YY      I D ++D   +    + +  P+     D + P 
Sbjct: 2   NIQETIQTLREELNQHNYNYYVLDNATISDYDFDIKLKELQDLENKHPEFF---DEDSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +   + H     SL+  ++ EDL  +  RI R     +   + +T E K D
Sbjct: 59  QRVGGTVTKNFKTIAHQYRMYSLDNSYSKEDLIDWENRIQRVLGNVN---LQYTCELKYD 115

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I+I Y+ GK V A  RGDG  G++V+  I+ I +IP  L  + PE  ++RGE+ +  
Sbjct: 116 GASISISYQNGKLVQALTRGDGFQGDEVTNNIKTIKSIPLKLKGDYPERFDIRGEIILPF 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  +N E+I +G  PY+NPRN ASG L+  +  ++  R L   ++ +   + +  K Q
Sbjct: 176 AGFEKMNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLECLLYTVA-GNNLPFKTQ 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L+  R  GF V N  +  N+   +  + +     R  LPY+ DG+V KV+    Q++
Sbjct: 235 FEGLESARKWGFKVPNEAKLVNSMQEVFDFIDYWDVHRHKLPYETDGVVIKVNSIHSQEE 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  +QAST+L  I  Q+GRTG +TPVA LEPV + G ++  A+LH
Sbjct: 295 LGYTAKSPRWAIAYKFKSEQASTKLKSISYQVGRTGAITPVANLEPVQLAGTIVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L           DIR+ D V V++ GE+IPK++ + + +R  +++   + + C
Sbjct: 355 NADQIEKL-----------DIRINDTVFVEKGGEIIPKIIAVDLEKRPENSEVTQYITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C++ +VR+         A H C     C  Q + R++H++SR A +IEGLG + +   
Sbjct: 404 PECETELVRNAGE------ANHYCPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVALL 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           FK+      +   AD++ L+        ++         S  NL + + K + I  E  +
Sbjct: 458 FKN----GLVHNYADLYELKVEDILHLERMAQ------KSAENLVNGVEKSKEIPFESVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ LAK+Y +    +Q             + LI V  +G+ IA++++E
Sbjct: 508 FALGIRFVGETVAKKLAKHYKNIDALSQA----------SLMDLILVDEIGERIARSVIE 557

Query: 615 FYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F++N  N   +E L K      ++ R   N + +   K  V +G   +  R + ++ +  
Sbjct: 558 FFENEENKIIIERLKKYGIQFETVERVNPNATEKFIGKTFVVSGVFSQFSRDELKKAIED 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            G  V + +S KTD ++ GDN G +KLEKA +L + I++E++F+  L +
Sbjct: 618 NGGKVGSSISAKTDFVVAGDNMGPAKLEKATKLNIPILSEDEFITKLNE 666


>gi|302333569|gb|ADL23762.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 667

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIHD-----------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L         ++          V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +  +   I   +     E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNESNS 667


>gi|283471175|emb|CAQ50386.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 667

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 375/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + +   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIHD-----------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L         ++          V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++      +  +   I   +     E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKYKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++T  GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLTSQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|126737638|ref|ZP_01753368.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6]
 gi|126721031|gb|EBA17735.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6]
          Length = 749

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/756 (39%), Positives = 430/756 (56%), Gaps = 56/756 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PI  LS  +A++EL+ L+  I   D  ++ +    I D  YD  KRR   +   FP L  
Sbjct: 4   PISDLSENEAQEELNELKLLIWSADRLHHTHDISEISDGAYDREKRRLKELVDTFPKLRP 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
             +    L+ +G        K++H+IP LSL   +   D+  F   I  +  +  D S+ 
Sbjct: 64  QAE--KILDSVGAPAASGFGKISHAIPMLSLGNAFEDGDVADFTKGIRNYLGQSADQSLA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYE G+ V+ A RGDG +GEDV+   R I  IP+VL+   PEI+EV
Sbjct: 122 FTAEPKIDGLSLSLRYENGRLVHGATRGDGSTGEDVTENARTIADIPQVLT-GAPEILEV 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246
           RGEVY+S  DF  LN      G K +ANPRNAA+G LR+L+      R L FF +  G+ 
Sbjct: 181 RGEVYMSHADFATLNARQEEQGGKSFANPRNAAAGSLRQLDAEVTRARPLRFFAYSWGEL 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  AK Q+E ++++  LGF  N       +   ++++Y  ++  R+TL YDIDG+VYKV
Sbjct: 241 SEPLAKTQFEAIERLSVLGFQTNELTALCTSVEEMIAHYRRIEEQRATLGYDIDGVVYKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ +LG RA +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG 
Sbjct: 301 NDMALQARLGFRATTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNEDYI+G D  G+ +RGG++IRVGD V + RAG+VIPKV D+ + +R  +  
Sbjct: 361 VVSNATLHNEDYIQGRDNKGEEIRGGKEIRVGDWVQIYRAGDVIPKVADVDIRKRTGNEI 420

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF+FP+ CP C S  VR+      +  A  RCTGGL C AQ +E+LKHFVSR AF+I+GL
Sbjct: 421 PFAFPTTCPECGSEAVRE------EGDAVRRCTGGLICPAQAIEKLKHFVSRKAFDIDGL 474

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +QL+ FF+  D    IR P DI+ L++R   +  K++N  G+G  S  NL+ +I ++R
Sbjct: 475 GAKQLEMFFEDTD--LPIRTPVDIYRLEQRDGENLAKLKNRHGWGAQSAENLFAAITQKR 532

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQ---------------------------- 578
            I L R IF LGIRHVG   A+ LA ++ S+                             
Sbjct: 533 RIPLGRMIFGLGIRHVGEVAAKDLALHFGSWADLAAAVDLAREAALAHRAADLAEEKERQ 592

Query: 579 ---------------NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
                          +       + A   + W  LI +  +G  +  ++ +   N     
Sbjct: 593 AAAAEGRRARIKETRDLEVSRLEVSASARESWEDLIGIDGIGATVGLSLSDALANVEERS 652

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            ++AL+ E+            S +  K +VFTG L+K+ R +A+     LGA VS  +S+
Sbjct: 653 VIDALVHELEIEAPAAPAQ-ESPVAGKTVVFTGKLEKMTRDEAKARAEALGAKVSGSVSK 711

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KTDI++ G   GSK +KAQ+LG++I++EE +L  + 
Sbjct: 712 KTDILVAGPGAGSKEKKAQELGIEILDEEGWLARIA 747


>gi|307609752|emb|CBW99264.1| DNA ligase [Legionella pneumophila 130b]
          Length = 650

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/690 (34%), Positives = 368/690 (53%), Gaps = 46/690 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 1   MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H  P LSL  ++  ++L+ FI R      +  +  + F  E
Sbjct: 58  DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P  L + N P++IEVRGE
Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP     R L  + +G+G   + 
Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISANRPLAIYCYGIGAFEDY 236

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGIEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 357 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L  +   S          G+ S  NL  ++ K +  
Sbjct: 460 VLIDQLVDE----GIVHHLADLYELDLQTLASL------PRMGEKSAKNLLSALEKSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   +                   L+ +  +G + 
Sbjct: 510 TFNRFLYALGIREIGEVGARVLAEHYCDVEGLKAAT----------IEELMTLNDIGPVA 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  +V F+    N+  ++ LLK     P   + + N  +    K +V TGTL  + R +A
Sbjct: 560 ASHVVHFFAQAHNLEVIDRLLKLGIHWPKSEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
           +  +  LGA VS  +S KTD ++ G   GS
Sbjct: 620 KAKLLALGAKVSGSVSSKTDYVVAGSEAGS 649


>gi|215405001|ref|ZP_03417182.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
 gi|289746820|ref|ZP_06506198.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
 gi|289687348|gb|EFD54836.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
          Length = 691

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/723 (30%), Positives = 354/723 (48%), Gaps = 43/723 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +  ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L  
Sbjct: 4   PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61

Query: 68  SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +GG         V H    LSL+  +  ++L  +  RI+           
Sbjct: 62  -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIP 182
            +  E KIDG  +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +P
Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241
           E++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P    R  L    H
Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           GLG          ++    +R  G PV+     A    G+    +     R  + ++IDG
Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV
Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN   IK            + + +GD V++++AG+VIP+V+  +V  R
Sbjct: 357 KVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  P+ CP C+S +         +  A  RC     C  Q  ER+ H  SR+  
Sbjct: 406 DGSEREFIMPTTCPECRSPL-----APEKEGDADIRCPNARGCPGQLRERVFHVASRNGL 460

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IE LG +      +++     I    ++F L  R    T       G    +   L  +
Sbjct: 461 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 516

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           ++K +   L R + +L IRHVG   AR+LA  + S    A    + +A           V
Sbjct: 517 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQLAA----------V 566

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG  IA A+ E++    +   V+         +   +++V   +    +V TG+L   
Sbjct: 567 EGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGF 626

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL   
Sbjct: 627 SRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADG 686

Query: 722 NTT 724
             +
Sbjct: 687 PAS 689


>gi|90962320|ref|YP_536236.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118]
 gi|123391334|sp|Q1WSH6|DNLJ_LACS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|90821514|gb|ABE00153.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118]
          Length = 672

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/719 (33%), Positives = 396/719 (55%), Gaps = 55/719 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +    EL  L  +++   + YY    P + DS YD   +R   +  A PDL  +   
Sbjct: 1   MSQKDIEMELKELRNKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KV+H IP LSL  +++ E+L +F+ R     +   +  + ++ E
Sbjct: 58  DSPSQRVGGKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLER----LENSVEQKLDYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE GKF+  + RG+G  GED++  ++ I  IP  L  N P  IEVRGE 
Sbjct: 114 LKIDGLAISLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIPMEL--NEPVSIEVRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN +  A G+  +ANPRNAA+G LR+L+     +R L+ F++ L +  ++ 
Sbjct: 172 YMPKKSFVELNTKREAEGQAVFANPRNAAAGSLRQLDTKITASRNLSTFIYYLMEPEKLG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E L K+   GF VNN  +Q  T   I +Y ++    R+ LPYDIDG+V K + F+
Sbjct: 232 IKTQTEALNKLESWGFKVNNESKQVKTKEEIFAYIDKATDQRANLPYDIDGIVLKAESFA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q Q+G   + PRW I++KF   +  T++LDI+  +GRTG++TP A +EPV + G  +  
Sbjct: 292 VQSQVGNTVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVAR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+K            +DIR+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 352 ASLHNPDYLK-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRTEDSVEYQI 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C +++V   +        A RC     C A   E L HF SR+A +I GLG + 
Sbjct: 401 PTECPECGAKLVHLDDE------VALRCINP-QCPALVKESLTHFASRNAMDIRGLGPRI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  +  E     I+  A I++L   Q  +  K      F + S  NL  +I+  RN S+
Sbjct: 454 IEQLYNREM----IKDVAGIYSLTFEQLITLDK------FKEKSANNLLTAIDNSRNNSI 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA++AR LA+ Y S  N A+  ++ I+           +  +G II  
Sbjct: 504 ERLIFGLGIRHVGAKVARILAENYKSMDNLAKAKSDEIS----------TIDSLGKIIGD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSP-------SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++  ++ +   +  ++ L +              + E +  S     ++V TGTL  ++R
Sbjct: 554 SVEMYFADEHVMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A+ ++   GA V+  +S+KTD++I G + GSKL KAQ+L V++MNE +F+  +++ +
Sbjct: 614 SEAKSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEEES 672


>gi|329726878|gb|EGG63336.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU144]
          Length = 665

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/708 (34%), Positives = 381/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + D+EYD L      I   +P+   +   + 
Sbjct: 1   MQDVKKRVGKLHDLLNQYSYEYYVQDNPSVPDNEYDKLLHELIEIEEKYPEFKST---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI     K     + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++      G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   + +          I +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTESEL----------IEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E      +      I   E     +   K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+ 
Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660


>gi|319937197|ref|ZP_08011604.1| DNA ligase [Coprobacillus sp. 29_1]
 gi|319807563|gb|EFW04156.1| DNA ligase [Coprobacillus sp. 29_1]
          Length = 662

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/701 (33%), Positives = 381/701 (54%), Gaps = 49/701 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L  +++ ++ ++  YY    P + D EYD L +   AI +  P+   +   + P  ++
Sbjct: 4   ERLIEIKKLLNEYNYQYYVLDNPSVSDQEYDRLMQELQAIENQHPEWLTA---DSPSQRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++  S  K+TH    LSL  I+N ++L  F  R+   +      ++ +  E KIDG  
Sbjct: 61  GGQVLDSFTKITHERMMLSLGNIFNEDELMAFDERVRETYP-----NVEYVCELKIDGLA 115

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ Y  G+  YAA RGDG  GED++  ++ I +IP  L+++     EVRGE+++ K  F
Sbjct: 116 VSLVYADGRLDYAATRGDGTVGEDITHNVKTIKSIP--LTIDYDGDFEVRGEIFMPKKSF 173

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             LN+E    G   +ANPRNAA+G +R+L+ T    R L+ F++ +   +E+      E 
Sbjct: 174 NELNEERAKAGEALFANPRNAAAGSVRQLDSTIAAKRKLDAFLYMVPTATEVGCTTHKEA 233

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  ++ LGF  N     ++    + ++  EM   R TLPY+IDG+V KV+    Q +LG 
Sbjct: 234 LDYIKELGFKTNPMTHVSSDIQDVWAFIQEMTEKRDTLPYEIDGIVIKVNNLEEQVRLGY 293

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+ P+W I++KF  ++  T+L DI   IGRTG +TP A LEPV + G+ +  ATLHNED
Sbjct: 294 TAKVPKWAIAYKFPAEEVVTKLKDIIFTIGRTGQITPNAILEPVRVAGSTVQRATLHNED 353

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            +K            +DIR+GD V+V++AG+VIP+VV  +   R    + F    +CP C
Sbjct: 354 NVKN-----------KDIRIGDYVVVRKAGDVIPEVVRSLKERRDGSEEKFKMIEYCPHC 402

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            SR+VR  N       AA+ C     C  +++ER+ HF SRDA NIEGLG++ ++ F+  
Sbjct: 403 GSRLVRKDNE------AAYYCLND-QCDFKKIERIIHFASRDAMNIEGLGEKIIEQFYN- 454

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++   DI+ L + +Q    +I +I GFG  S+ NL  +I K +  S+E+ +F L
Sbjct: 455 ---LGFVKNIEDIYDLYKHEQ----EIMDIEGFGKKSMDNLVAAIEKSKENSMEKLLFGL 507

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI+ +GA++A +L+K + S     +     +          + +  VG+ I Q+I  F  
Sbjct: 508 GIKGIGAKMADNLSKEFKSIDAMLEASTAKL----------LSIKDVGETIVQSINHFRN 557

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +P ++  +  L           E  +   S    + +  TGTL+ + R + ++Y+ +LGA
Sbjct: 558 DPASLELLMNLKALGLNMNYLKETTLLQESIFNGQTVCITGTLELMTRKEMKDYLARLGA 617

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            V+  +S+ TD +I G + GSKLEKA QLGV ++ EE+F  
Sbjct: 618 NVTGSVSKNTDFLICGRDAGSKLEKANQLGVTVLTEEEFRK 658


>gi|21283574|ref|NP_646662.1| DNA ligase [Staphylococcus aureus subsp. aureus MW2]
 gi|49486723|ref|YP_043944.1| DNA ligase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87161485|ref|YP_494537.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195803|ref|YP_500613.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151222054|ref|YP_001332876.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161510127|ref|YP_001575786.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140357|ref|ZP_03564850.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253734986|ref|ZP_04869151.1| DNA ligase [Staphylococcus aureus subsp. aureus TCH130]
 gi|258451030|ref|ZP_05699066.1| DNA ligase, NAD-dependent [Staphylococcus aureus A5948]
 gi|282923243|ref|ZP_06330924.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9765]
 gi|284024951|ref|ZP_06379349.1| DNA ligase [Staphylococcus aureus subsp. aureus 132]
 gi|294849453|ref|ZP_06790195.1| DNA ligase [Staphylococcus aureus A9754]
 gi|297208934|ref|ZP_06925338.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300913009|ref|ZP_07130447.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304379092|ref|ZP_07361839.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|75410712|sp|Q9AIU7|DNLJ_STAAU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81649030|sp|Q6G829|DNLJ_STAAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81704301|sp|Q7A0H1|DNLJ_STAAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123098079|sp|Q2G1Y0|DNLJ_STAA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123749595|sp|Q2FFJ1|DNLJ_STAA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359293|sp|A6QID2|DNLJ_STAAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359294|sp|A8Z2R8|DNLJ_STAAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13182984|gb|AAK15020.1| DNA ligase [Staphylococcus aureus]
 gi|21205015|dbj|BAB95710.1| DNA ligase [Staphylococcus aureus subsp. aureus MW2]
 gi|49245166|emb|CAG43632.1| DNA ligase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87127459|gb|ABD21973.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87203361|gb|ABD31171.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150374854|dbj|BAF68114.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368936|gb|ABX29907.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253727168|gb|EES95897.1| DNA ligase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257861272|gb|EEV84084.1| DNA ligase, NAD-dependent [Staphylococcus aureus A5948]
 gi|269941376|emb|CBI49773.1| DNA ligase [Staphylococcus aureus subsp. aureus TW20]
 gi|282593154|gb|EFB98153.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9765]
 gi|294823590|gb|EFG40017.1| DNA ligase [Staphylococcus aureus A9754]
 gi|296886424|gb|EFH25353.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|298695246|gb|ADI98468.1| DNA ligase [Staphylococcus aureus subsp. aureus ED133]
 gi|300885787|gb|EFK80994.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751777|gb|ADL65954.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304342327|gb|EFM08219.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|320139715|gb|EFW31584.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142368|gb|EFW34182.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323439848|gb|EGA97564.1| DNA ligase [Staphylococcus aureus O11]
 gi|323443011|gb|EGB00632.1| DNA ligase [Staphylococcus aureus O46]
 gi|329314581|gb|AEB88994.1| DNA ligase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728576|gb|EGG65006.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21189]
 gi|329731482|gb|EGG67845.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21193]
          Length = 667

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIHD-----------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L         ++          V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +  +   I   +     E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|228476354|ref|ZP_04061055.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119]
 gi|228269637|gb|EEK11143.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119]
          Length = 667

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/708 (33%), Positives = 377/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   ++ +   YY    P + DSEYD L R    I +A P+L      + 
Sbjct: 1   MDNIQNRVNELHDLLNQYSYEYYVKDNPSVPDSEYDKLLRELIDIENAHPELKTD---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N E+LR+F  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHETPMLSLGNAFNEEELRRFDERIREHI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYEDGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LNDE      +P+ANPRNAA+G LR+L+P     R L+ F++ +   ++  A 
Sbjct: 171 PRRSFMRLNDEREKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFSAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q + L ++  LGF  N+   +     G++ Y  +    R  L YDIDG+V KV++   Q
Sbjct: 231 TQSDALDELDRLGFKTNHERARVEDIEGVLEYIKKWTKQREQLSYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T L DI++ IGRTG++TP A LEP+ + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTELKDIELSIGRTGVVTPTAILEPIRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED IK            RDIR+GD V+VK+AG++IP+VV  I++ R  DA+P+  P+
Sbjct: 351 LHNEDLIK-----------ERDIRIGDSVIVKKAGDIIPEVVRSIIDRRPNDAKPYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGNKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +  +     I+   DIF L +       ++          V NL  +I   +  SLE 
Sbjct: 453 QLYHHQ----LIKDVGDIFYLTKEDLLPLERMGT------KKVENLLSAIEHAKQNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+GA+ ++ LA+ + +     +     +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGAKASQILAEKFETMDRLLKVTEEEL----------VAIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V +  N      +E      +  +   +   E     E +NK +V TG LQ++ R +A  
Sbjct: 553 VTYLDNEDIKALIEKLKDKNVNMIYKGVKSSEIEGHPEFQNKTIVLTGKLQQMTRKEATT 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V++ +++ TD++I G++ GSKL KA+Q G +I +E QF+ 
Sbjct: 613 WLEMQGAKVTSSVTKSTDLVIAGEDAGSKLSKAEQFGTEIWSESQFIE 660


>gi|258421012|ref|ZP_05683943.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9719]
 gi|257842960|gb|EEV67378.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9719]
          Length = 667

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVGYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIHD-----------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L         ++          V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +  +   I   +     E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|253729682|ref|ZP_04863847.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253726568|gb|EES95297.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 667

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 375/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIHD-----------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L         ++          V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G ++++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKVSQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +  +   I   +     E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|328887795|emb|CAJ70206.2| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Clostridium
           difficile]
          Length = 674

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/706 (31%), Positives = 382/706 (54%), Gaps = 50/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N
Sbjct: 3   VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPTN 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+      ++ H  P LSL   ++ +DLR F  R+  +       ++ + +E KIDG
Sbjct: 60  RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVG----ENVEYVVEFKIDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK+
Sbjct: 116 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 173

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           +F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E   +   
Sbjct: 174 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHS 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++
Sbjct: 234 ESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEM 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHN
Sbjct: 294 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 353

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP
Sbjct: 354 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    +R          AA +C   ++C AQ    + HFVSRDA NI+GLG+  +    
Sbjct: 403 VCSEPTIRLEGE------AAVKCIN-MSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 455

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             +     I+  +D++ +++       ++      G+ S  NL +SI K +   L R I 
Sbjct: 456 NEKI----IQDVSDLYYIKKEDVVDLERM------GEKSADNLINSIEKSKENDLWRLIN 505

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI+ +G + A+ LA  +       ++++ +I+  ++       +   G I+A ++VEF
Sbjct: 506 GLGIKFIGVKAAKILAYNF-------KDLDEVISATSEQLEE---LEEFGSIMANSVVEF 555

Query: 616 YQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++  +N+  +  L      + S+    + V    E  K+V TGTL  ++R+ A+E + + 
Sbjct: 556 FKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKEMIEKR 615

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 616 GGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 661


>gi|15924894|ref|NP_372428.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927478|ref|NP_375011.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus
           subsp. aureus N315]
 gi|148268377|ref|YP_001247320.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH9]
 gi|150394439|ref|YP_001317114.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH1]
 gi|156980220|ref|YP_001442479.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316913|ref|ZP_04840126.1| DNA ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|255006691|ref|ZP_05145292.2| DNA ligase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258408884|ref|ZP_05681166.1| DNA ligase [Staphylococcus aureus A9763]
 gi|258430016|ref|ZP_05688386.1| DNA ligase [Staphylococcus aureus A9299]
 gi|258443466|ref|ZP_05691808.1| DNA ligase [Staphylococcus aureus A8115]
 gi|258445324|ref|ZP_05693515.1| DNA ligase [Staphylococcus aureus A6300]
 gi|258447888|ref|ZP_05696022.1| DNA ligase [Staphylococcus aureus A6224]
 gi|258453321|ref|ZP_05701306.1| DNA ligase [Staphylococcus aureus A5937]
 gi|269203557|ref|YP_003282826.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894571|ref|ZP_06302799.1| DNA ligase, NAD-dependent [Staphylococcus aureus A8117]
 gi|282928077|ref|ZP_06335684.1| DNA ligase, NAD-dependent [Staphylococcus aureus A10102]
 gi|295407285|ref|ZP_06817084.1| DNA ligase [Staphylococcus aureus A8819]
 gi|296275664|ref|ZP_06858171.1| DNA ligase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246190|ref|ZP_06930041.1| DNA ligase [Staphylococcus aureus A8796]
 gi|81705420|sp|Q7A4Q5|DNLJ_STAAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81781309|sp|Q99SY3|DNLJ_STAAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216246|sp|A7X432|DNLJ_STAA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359291|sp|A6U309|DNLJ_STAA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359292|sp|A5IU71|DNLJ_STAA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13701697|dbj|BAB42990.1| DNA ligase [Staphylococcus aureus subsp. aureus N315]
 gi|14247676|dbj|BAB58066.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741446|gb|ABQ49744.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH9]
 gi|149946891|gb|ABR52827.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH1]
 gi|156722355|dbj|BAF78772.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257840331|gb|EEV64793.1| DNA ligase [Staphylococcus aureus A9763]
 gi|257849610|gb|EEV73578.1| DNA ligase [Staphylococcus aureus A9299]
 gi|257851351|gb|EEV75291.1| DNA ligase [Staphylococcus aureus A8115]
 gi|257855842|gb|EEV78766.1| DNA ligase [Staphylococcus aureus A6300]
 gi|257858820|gb|EEV81689.1| DNA ligase [Staphylococcus aureus A6224]
 gi|257864529|gb|EEV87272.1| DNA ligase [Staphylococcus aureus A5937]
 gi|262075847|gb|ACY11820.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282590141|gb|EFB95222.1| DNA ligase, NAD-dependent [Staphylococcus aureus A10102]
 gi|282763058|gb|EFC03190.1| DNA ligase, NAD-dependent [Staphylococcus aureus A8117]
 gi|285817585|gb|ADC38072.1| DNA ligase [Staphylococcus aureus 04-02981]
 gi|294967860|gb|EFG43890.1| DNA ligase [Staphylococcus aureus A8819]
 gi|297176897|gb|EFH36154.1| DNA ligase [Staphylococcus aureus A8796]
 gi|312830277|emb|CBX35119.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129286|gb|EFT85280.1| DNA ligase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329724802|gb|EGG61306.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21172]
          Length = 667

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIHD-----------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L         ++          V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +  +   I   +     E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|313114130|ref|ZP_07799682.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623539|gb|EFQ06942.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 666

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/716 (31%), Positives = 363/716 (50%), Gaps = 51/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L +EQA+K +  L   I  ++  YY    P + D EYDAL R    +   FP L  +
Sbjct: 1   MELLELEQAKKRVEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  K+GG  +  L KVTH++   SL   ++ ++LR F  R+             +
Sbjct: 61  ---SSPTQKVGGTASSKLPKVTHAVKMESLLDAFSYDELRDFDRRVRE-----AGIEPEY 112

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG   ++ YE G+ V A+ RGDG  GEDV+A +RAI +IP+ L  + PE +EVR
Sbjct: 113 VVEIKIDGLSCSLEYENGELVRASTRGDGVVGEDVTANVRAIRSIPKKLK-DAPEFLEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GEVY+    F  L  E    G  P+ NPRNAA+G LR+ +     +R L+ FV  + +  
Sbjct: 172 GEVYMPHGAFQKLCAEQELQGAAPFKNPRNAAAGSLRQKDARITGSRGLSIFVFNVQQIR 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E L  ++ LG PV+      +     ++   ++   R+ L +D+DG V KV+
Sbjct: 232 GKTLTKHAESLDYLKSLGLPVSPRYHIVHDIEQAIAEIEQIGQNRAKLDFDMDGAVIKVN 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+ +  +G   + PRW I+ K+  +   T L  I++ +GRTG+LTP A  +PV + G  
Sbjct: 292 DFAQRDLMGSTNKFPRWAIAFKYPPEVKETTLRSIEVAVGRTGVLTPTACFDPVFLAGTT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHNED+I               + +GD + V++AG++IP+V+ +  +    DAQP
Sbjct: 352 VARATLHNEDFIHQF-----------GLCIGDTIQVRKAGDIIPEVIGVTHHA--EDAQP 398

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C + VV   +       AA RC     C AQ L  + HF SRDA +IEGLG
Sbjct: 399 YEMPTVCPSCGAPVVHLEDE------AALRCVNP-ECPAQALRNIIHFASRDAMDIEGLG 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                   + +     +   ADI+TL R Q  +  K      F + S  NL ++I   + 
Sbjct: 452 TAVATQLVEKDM----VHSAADIYTLTREQLLTLDK------FKEKSADNLLNAIEASKQ 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L++ +F  GIR++G + A  LA+++ + Q          A        +  +   G +
Sbjct: 502 NNLDKLLFGFGIRNIGDKAAALLAEHFGTLQ----------AVREASAEQISEIDGFGGV 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +AQ++VEF+        V  L  +   ++    +    ++  K LV TGTL+ + R++A+
Sbjct: 552 MAQSVVEFFAKEGTTDLVHRL-ADAGLNMQWKGEPKGDKLAGKTLVVTGTLETLSRNEAE 610

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             + + G   S  +S+KT  ++ G   GSKL KAQ LG+ ++ E +FL ++   N 
Sbjct: 611 ALIVKNGGKASGSVSKKTAYVVAGTAAGSKLTKAQVLGIPVLTEAEFLAMISDENI 666


>gi|126700928|ref|YP_001089825.1| DNA ligase [Clostridium difficile 630]
 gi|123362868|sp|Q180F3|DNLJ_CLOD6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 677

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/706 (31%), Positives = 382/706 (54%), Gaps = 50/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N
Sbjct: 6   VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPTN 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+      ++ H  P LSL   ++ +DLR F  R+  +       ++ + +E KIDG
Sbjct: 63  RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVG----ENVEYVVEFKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK+
Sbjct: 119 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           +F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E   +   
Sbjct: 177 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHS 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++
Sbjct: 237 ESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEM 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHN
Sbjct: 297 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP
Sbjct: 357 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    +R          AA +C   ++C AQ    + HFVSRDA NI+GLG+  +    
Sbjct: 406 VCSEPTIRLEGE------AAVKCIN-MSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             +     I+  +D++ +++       ++      G+ S  NL +SI K +   L R I 
Sbjct: 459 NEKI----IQDVSDLYYIKKEDVVDLERM------GEKSADNLINSIEKSKENDLWRLIN 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI+ +G + A+ LA  +       ++++ +I+  ++       +   G I+A ++VEF
Sbjct: 509 GLGIKFIGVKAAKILAYNF-------KDLDEVISATSEQLEE---LEEFGSIMANSVVEF 558

Query: 616 YQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++  +N+  +  L      + S+    + V    E  K+V TGTL  ++R+ A+E + + 
Sbjct: 559 FKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKEMIEKR 618

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 619 GGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 664


>gi|314934069|ref|ZP_07841432.1| DNA ligase, NAD-dependent [Staphylococcus caprae C87]
 gi|313653180|gb|EFS16939.1| DNA ligase, NAD-dependent [Staphylococcus caprae C87]
          Length = 667

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/714 (33%), Positives = 377/714 (52%), Gaps = 53/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +  ++ L   ++ +   YY    P + DSEYD L      I    P+   +   + 
Sbjct: 1   MEDLQSRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIDIEEKHPEYKTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI     K     + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDNIGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y+ G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYQNGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A 
Sbjct: 171 PRRSFMNLNAEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTDFDAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E LQ +  LGF  N    +     G++ Y ++    R +L YDIDG+V KV++   Q
Sbjct: 231 TQSEALQGLDDLGFKTNQERERVADIDGVLDYIDKWTEKRESLSYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  ++LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVSKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPKDAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCDHELVRIEGE------VALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++E     I+  ADIF L+        ++ +        V NL  +I K ++ SLE 
Sbjct: 453 QLYENE----LIKDVADIFYLKEEDLLPLERMGS------KKVENLLAAIEKAKDNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLDVTEEEL----------VAIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +      I   E     E   K +V TG L+++ R +A +
Sbjct: 553 VTYLENEDIRALIQKLKDKNVNMNYKGIKTSEIEGHPEFNGKTIVLTGKLEQMTRSEATQ 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E++F    ++ N
Sbjct: 613 WLEMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKFGKEIWTEDEFAKKQKESN 666


>gi|308377195|ref|ZP_07441467.2| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008]
 gi|13882885|gb|AAK47423.1| DNA ligase [Mycobacterium tuberculosis CDC1551]
 gi|308348655|gb|EFP37506.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008]
          Length = 679

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/712 (30%), Positives = 350/712 (49%), Gaps = 43/712 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L     P+ P   +
Sbjct: 3   RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 59

Query: 79  GGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG         V H    LSL+  +  ++L  +  RI+            +  E KIDG 
Sbjct: 60  GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH----YLCELKIDGV 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193
            +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +PE++EVRGEV+ 
Sbjct: 116 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAK 252
             +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P    R  L    HGLG        
Sbjct: 176 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++    +R  G PV+     A    G+    +     R  + ++IDG+V KVDE +LQ
Sbjct: 236 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQ 295

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  AT
Sbjct: 296 RRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQAT 355

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   IK            + + +GD V++++AG+VIP+V+  +V  R    + F  P+
Sbjct: 356 LHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPT 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +         +  A  RC     C  Q  ER+ H  SR+  +IE LG +   
Sbjct: 405 TCPECGSPL-----APEKEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGV 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +++     I    ++F L  R    T       G    +   L  +++K +   L R
Sbjct: 460 ALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWR 515

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +L IRHVG   AR+LA  + S    A    + +A           V  VG  IA A+
Sbjct: 516 VLVALSIRHVGPTAARALATEFGSLDAIAAASTDQLAA----------VEGVGPTIAAAV 565

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            E++    +   V+         +   +++V   +    +V TG+L    R  A+E +  
Sbjct: 566 TEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVA 625

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL     +
Sbjct: 626 RGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADGPAS 677


>gi|255009394|ref|ZP_05281520.1| putative DNA ligase [Bacteroides fragilis 3_1_12]
 gi|313147153|ref|ZP_07809346.1| DNA ligase [Bacteroides fragilis 3_1_12]
 gi|313135920|gb|EFR53280.1| DNA ligase [Bacteroides fragilis 3_1_12]
          Length = 665

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/707 (32%), Positives = 363/707 (51%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D L R    +    P+    +D N P  
Sbjct: 3   VKEKIDQLRIQLHQHNYNYYVLNAPEISDKEFDDLMRELQTLEQEHPEY---KDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKALN----EDFEICCEMKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
           T I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL  N  P++ E+RGE+ +  
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGNNYPDVFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L     +   G 
Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    QK 
Sbjct: 235 YENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWNVERKNLNVATDGIVLKVNSLKQQKN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNTVSYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+GL           D+ +GD V V++ GE+IPK+  + V  R    +   F + C
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDVAARFMIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++ +     I   AD++ L       T  I+N+   GD S  N+   I + + I  ER I
Sbjct: 458 YRLD----LIHNTADLYQLT------TDDIKNLDRMGDKSAENIIRGIMQSKEIPFERVI 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +           +I+   N D  +L+ +  +G+ IAQ+I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSF----------KDIVELENADLETLVSIDEIGEKIAQSILN 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ N  N   ++ L           E       ++  + +V +G      R + ++ + +
Sbjct: 558 YFANDSNRKLIDRLKIAGLQLYRPEEDLSEHTDKLAGQSIVISGVFTHHSRDEYKDLIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 618 HGGKNVGSISAKTSFILAGDNMGPAKLEKANKLGIKIMNEEEFLKLI 664


>gi|86605509|ref|YP_474272.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab]
 gi|123765626|sp|Q2JW63|DNLJ_SYNJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86554051|gb|ABC99009.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab]
          Length = 673

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/700 (33%), Positives = 372/700 (53%), Gaps = 51/700 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +    L   +      YY +  PI+ DS YD L R    +  A+P+L     P+ P 
Sbjct: 4   KLEQRARELRALLQKASIAYYVHDAPILEDSVYDRLYRELQELERAYPELI---TPDSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-KDDNSIFFTLEPKI 134
            ++G +       V+H IP  SLE  +N+E+L+++  R++R   +  ++  + +  E KI
Sbjct: 61  QRVGEKPAEQFPTVSHRIPLYSLENAFNLEELKEWQERLWRVLGRTPEEGELEYVCELKI 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  + + Y  G     A RGDG SGED++  IRAIP+IP  L +   P ++EVRGE Y+
Sbjct: 121 DGAALALTYVDGLLQRGATRGDGQSGEDITPNIRAIPSIPLRLATAAPPPVLEVRGEAYL 180

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL----GKTSE 248
              +F  +N E  + G  P+ANPRN A+G LR+L+   +  R L+FF + L    G  S 
Sbjct: 181 PIAEFERINRERCSAGDPPFANPRNCAAGTLRQLDSRVVAARKLSFFAYALHWPEGWPSG 240

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q+E LQ+++ LG PVN   +       +V +Y   +   + LPY  DG+V K++ 
Sbjct: 241 DPPQTQWECLQRLKDLGLPVNPLSQVCRGLEEVVQFYERWRQ--AQLPYACDGVVVKLNS 298

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++ G   + PRW I+ K+  ++  TR+  I   +GRTG +TPVA LEPV + G  +
Sbjct: 299 LRLQEEAGFTQKFPRWAIALKYPAQEVPTRIRAIVASVGRTGAVTPVAELEPVLLAGTTV 358

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D ++ L           D+ +GD  +V++AGE+IP+VV I+   R PDA P+
Sbjct: 359 SRASLHNADRLEEL-----------DVHIGDTAIVRKAGEIIPEVVGILKELRPPDAVPY 407

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             PS CP C + +VR          A  RC    AC A+   +L+H+ SRDA +IEGLG+
Sbjct: 408 RLPSHCPECGTLLVRPAGE------AITRCPNP-ACPAKIRGQLQHWASRDAMDIEGLGE 460

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +++    +       +R  AD++ L      S        G G  S   L  +I + R  
Sbjct: 461 KRVAQLVEK----LGVRTVADLYRLTPEHLESLE------GMGSRSSQKLVQAIQRSRQQ 510

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             ER ++ LGI HVG   A+ LA+++ + +  AQ     IA          ++  +G  I
Sbjct: 511 PWERVLYGLGIPHVGVVTAQILAQHFPAPELLAQARAEDIA----------QIYGIGAEI 560

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQ 667
           A+A+V ++ +P +   ++ L +   P++ R     VS  +  KK V TGTL  + R +A+
Sbjct: 561 AEAVVAWFADPAHQKLLQELRELGIPALPRQAAPAVSQVLAGKKFVITGTLPTLSRQQAK 620

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
            ++   G  V+A +SR+TD ++VG +PGSKL++AQ LG+ 
Sbjct: 621 AWIESRGGKVTASVSRQTDYVVVGSDPGSKLKQAQALGIP 660


>gi|300214970|gb|ADJ79386.1| DNA ligase(Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
           salivarius CECT 5713]
          Length = 672

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/719 (33%), Positives = 396/719 (55%), Gaps = 55/719 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +    EL  L  +++   + YY    P + DS YD   +R   +  A PDL  +   
Sbjct: 1   MSQKDIEMELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KV+H IP LSL  +++ E+L +F+ R     +   +  + ++ E
Sbjct: 58  DSPSQRVGGKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLER----LENSVEQKLDYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE GKF+  + RG+G  GED++  ++ I  IP  L  N P  IEVRGE 
Sbjct: 114 LKIDGLAISLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIPMEL--NEPVSIEVRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN +  A G+  +ANPRNAA+G LR+L+     +R L+ F++ L +  ++ 
Sbjct: 172 YMPKKSFVELNTKREAEGQAVFANPRNAAAGSLRQLDTKITASRNLSTFIYYLMEPEKLG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E L K+   GF VNN  +Q  T   I +Y ++    R+ LPYDIDG+V K + F+
Sbjct: 232 IKTQTEALNKLESWGFKVNNESKQVKTKEEIFAYIDKATDQRANLPYDIDGIVLKAESFA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q Q+G   + PRW I++KF   +  T++LDI+  +GRTG++TP A +EPV + G  +  
Sbjct: 292 VQSQVGNTVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVAR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY++            +DIR+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 352 ASLHNPDYLR-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRSEDSVEYQI 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C +++V   +        A RC     C A   E L HF SR+A +I GLG + 
Sbjct: 401 PTECPECGAKLVHLDDE------VALRCINP-QCPALVKESLTHFASRNAMDIRGLGPRI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  +  E     I+  A I++L   Q  +  K      F + S  NL  +I+  RN S+
Sbjct: 454 IEQLYNREM----IKDVAGIYSLTFEQLITLDK------FKEKSANNLLTAIDNSRNNSI 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA++AR LA+ Y S  N A+  ++ I+           +  +G II  
Sbjct: 504 ERLIFGLGIRHVGAKVARILAENYKSMDNLAKAKSDEIS----------TIDSLGKIIGD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSP-------SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++  ++ +   +  ++ L +              + E +  S     ++V TGTL  ++R
Sbjct: 554 SVEMYFADEHVMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A+ ++   GA V+  +S+KTD++I G + GSKL KAQ+L V++MNE +F+  +++ +
Sbjct: 614 SEAKSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEEES 672


>gi|262382012|ref|ZP_06075150.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B]
 gi|262297189|gb|EEY85119.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B]
          Length = 664

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/709 (32%), Positives = 361/709 (50%), Gaps = 52/709 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++ +L  E+  H+  YY  S P I D E+D + +    +  A P+ A   DP+ P  
Sbjct: 2   VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTR 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +++    +V H  P LSL   ++ +++R F  R  R              E K DG
Sbjct: 59  RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSLN----EPFEIVAELKYDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YEKG+   A  RGDG  G+DV+A I+ I ++P  L   + PE  E+RGEV +  
Sbjct: 115 TSISLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPW 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            +F  LN E        +ANPRNAASG L++ NP  +  R L+ + + L     + A+G 
Sbjct: 175 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYL-LGENLPAEGH 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ  R  GF + + +R+  +   I  Y       R  LP   DG+V KV+    Q+ 
Sbjct: 234 YENLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRN 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G ++  A+LH
Sbjct: 294 LGFTSKSPRWAIAYKFQAERAETRLNLVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433
           N D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   
Sbjct: 354 NADIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRV 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +VR          AAH C     C  Q   R++HFV+R A NI  +G + ++ 
Sbjct: 403 CPECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNI-NIGPETVED 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            +     A  ++  AD++TL         +      + + S  NL  S+ + + +  ER 
Sbjct: 456 LYN----AGYVKDSADLYTLTVADLLRLER------WAEKSAQNLMSSLEESKQVPFERV 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR VG  +A+ LA  + S +   Q               L+ V  +G+ IAQ+++
Sbjct: 506 LFGLGIRFVGETVAKRLASAFHSIEALEQA----------SLEDLVAVDEIGERIAQSVL 555

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            ++ + +N   V  L ++        E+    S +++   +V +GT  K  R + +  + 
Sbjct: 556 SYFSDEKNRTLVNRLKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIE 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           Q G   S  +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+
Sbjct: 616 QHGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664


>gi|314936043|ref|ZP_07843392.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655860|gb|EFS19603.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis
           C80]
          Length = 667

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/708 (33%), Positives = 376/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   ++ +   YY    P + DSEYD L R    I +A P+L      + 
Sbjct: 1   MDNIQNRVNELHDLLNQYSYEYYVKDNPSVPDSEYDKLLRELIDIENAHPELKTD---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N E+LR+F  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHETPMLSLGNAFNEEELRRFDERIREHI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYEDGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LNDE      +P+ANPRNAA+G LR+L+P     R L+ F++ +   ++  A 
Sbjct: 171 PRRSFMRLNDEREKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFSAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q + L ++  LGF  N+   +     G++ Y  +    R  L YDIDG+V KV++   Q
Sbjct: 231 TQSDALDELDRLGFKTNHERARVEDIEGVLEYIKKWTKQREQLSYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T L DI++ IGRTG++TP A LEP+ + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTELKDIELSIGRTGVVTPTAILEPIRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED IK            RDIR+GD V+VK+AG++IP+VV  I++ R  DA+P+  P+
Sbjct: 351 LHNEDLIK-----------ERDIRIGDSVIVKKAGDIIPEVVRSIIDRRPNDAKPYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGNKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +  +     I+   DIF L +       ++          V NL  +I   +  SLE 
Sbjct: 453 QLYHHQ----LIKDVGDIFYLTKEDLLPLERMGT------KKVENLLSAIEHAKQNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+GA+ ++ LA+ + +     +     +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGAKASQILAEKFETMDRLLKVTEEEL----------VAIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V +  N      +E      +      +   E     E +NK +V TG LQ++ R +A  
Sbjct: 553 VTYLDNEDIKALIEKLKDKNVNMTYKGVKSSEIEGHPEFQNKTIVLTGKLQQMTRKEATT 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V++ +++ TD++I G++ GSKL KA+Q G +I +E QF+ 
Sbjct: 613 WLEMQGAKVTSSVTKSTDLVIAGEDAGSKLSKAEQFGTEIWSESQFIE 660


>gi|49484145|ref|YP_041369.1| DNA ligase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257426036|ref|ZP_05602458.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428709|ref|ZP_05605104.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431319|ref|ZP_05607695.1| DNA ligase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257434037|ref|ZP_05610388.1| DNA ligase [Staphylococcus aureus subsp. aureus E1410]
 gi|282904535|ref|ZP_06312420.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906308|ref|ZP_06314160.1| DNA ligase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909224|ref|ZP_06317040.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911529|ref|ZP_06319329.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282925143|ref|ZP_06332803.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C101]
 gi|283958665|ref|ZP_06376111.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293507779|ref|ZP_06667621.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510281|ref|ZP_06668987.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M809]
 gi|293539336|ref|ZP_06672015.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428486|ref|ZP_06821113.1| DNA ligase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590042|ref|ZP_06948682.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           MN8]
 gi|81650789|sp|Q6GFF3|DNLJ_STAAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49242274|emb|CAG40981.1| DNA ligase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271179|gb|EEV03336.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274353|gb|EEV05865.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277968|gb|EEV08624.1| DNA ligase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257280963|gb|EEV11107.1| DNA ligase [Staphylococcus aureus subsp. aureus E1410]
 gi|282313101|gb|EFB43499.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C101]
 gi|282324538|gb|EFB54850.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326792|gb|EFB57089.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330505|gb|EFB60022.1| DNA ligase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595091|gb|EFC00058.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C160]
 gi|283789705|gb|EFC28527.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919871|gb|EFD96940.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291094842|gb|EFE25110.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466645|gb|EFF09165.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M809]
 gi|295127468|gb|EFG57107.1| DNA ligase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577170|gb|EFH95884.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312437629|gb|ADQ76700.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315193434|gb|EFU23831.1| DNA ligase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 667

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + +   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIHD-----------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L         ++          V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +  +   I   +     E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|268323600|emb|CBH37188.1| DNA ligase [uncultured archaeon]
          Length = 667

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/702 (33%), Positives = 390/702 (55%), Gaps = 49/702 (6%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L ++I YH+  YY   +P I D+EYD L    + +   +P+L     P+ P  +IG 
Sbjct: 14  IAQLREKIHYHNYRYYVLDEPEISDAEYDRLFVELEELERKYPELI---TPDSPTQRIGA 70

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +         H IP LSL  +     +R F  R+ R         I + +EPKIDG  + 
Sbjct: 71  KPVAEFGTYKHRIPMLSLNSVNTEVAVRDFDERVRRMLG---VEEIEYVVEPKIDGLAME 127

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YE G F+  + RGDG +GE+++  ++ + T+P  +      ++EVRGEV++  + F  
Sbjct: 128 LVYENGVFIVGSTRGDGKTGENITQNLKTVKTLPLRILSETAPLLEVRGEVFMPVSKFKE 187

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           LND + A G + +ANPRNAA+G +R+L+     +R L+FF +G+G+T       Q+E+L 
Sbjct: 188 LNDLLGAKGDRMFANPRNAAAGSVRQLDSRVTASRPLDFFAYGIGRTEGKTFSTQWEVLM 247

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  +GF V+  +R+   F  ++ Y++E+K  R  L Y+IDG+V KV+    Q++LG  +
Sbjct: 248 YLHKIGFKVSPLIRRFKVFEDVIKYHDEVKEKRDELDYEIDGIVVKVNGIEQQERLGLIS 307

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           RSPRW I++KF  ++  T + DI +Q+GRTG LTPVA L PV I G  ++ ATLHNE+ +
Sbjct: 308 RSPRWAIAYKFPAREEFTTVNDIVVQVGRTGALTPVAILAPVQISGVTVSRATLHNENEL 367

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           +            +D+R+GD V+V+RAG+VIP+VV +I ++R    + F  P  CPIC +
Sbjct: 368 RR-----------KDVRIGDTVVVERAGDVIPEVVSVIKSKRTGAEKEFRMPGRCPICGA 416

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            V+++            RC G ++CSAQ  E +KHF S  A NI+GLG++ +      + 
Sbjct: 417 DVLKE--------GPIVRCIG-VSCSAQLKEWIKHFASLRAMNIDGLGEKVIAQLCDRKM 467

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +   AD+F L +R+     ++      GD S  N+ +++ K ++ +L R I++LGI
Sbjct: 468 ----VSDAADLFFLTKRELLKLDRM------GDKSARNILNALEKSKHTTLSRLIYALGI 517

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVGA  A  LA  +   ++            N  +  L+ +P +G  +A++I+ F++  
Sbjct: 518 RHVGAHTASLLADNFSELESLR----------NASYDDLVHIPEIGPEVAKSIILFFKQG 567

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                +  L +       + +    + +E K  VFTG +  + R +A+  V +LG  V++
Sbjct: 568 GTKDLLGKL-ERAGVWYEKKKAAAEARLEGKTFVFTGRIS-MPREEAKSLVERLGGKVAS 625

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            +S+KTD ++ G+  GSK EKA++LGVKI+ E +F  +++  
Sbjct: 626 SVSKKTDYVVAGEEAGSKREKAEKLGVKIIGESEFGEIIRDG 667


>gi|329767007|ref|ZP_08258535.1| DNA ligase [Gemella haemolysans M341]
 gi|328837732|gb|EGF87357.1| DNA ligase [Gemella haemolysans M341]
          Length = 663

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/709 (34%), Positives = 391/709 (55%), Gaps = 50/709 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++Q ++++S L   ++ +   YY    P I D+EYD L ++ + +    P+       N 
Sbjct: 1   MKQVQEKISKLVSLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEENHPEYILE---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +     K+TH +P LSL   ++ EDLR F  RI +      D+S+ +  E K
Sbjct: 58  PTQRVGDRVLDEFEKITHKVPMLSLSNTFSTEDLRDFDARISKLVP---DHSVEYICELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+I+YE G+ V AA RGDG  GEDV+  I+ I +IP+VL  N     EVRGEVY+
Sbjct: 115 IDGLAISIKYEDGRLVSAATRGDGSIGEDVTENIKTIFSIPKVLKDN--RTFEVRGEVYL 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F  LN E  +     +ANPRNAA+G LR+L+      R L+ F++ +     I   
Sbjct: 173 PRKSFELLNSERESNNEVLFANPRNAAAGSLRQLDSKITAKRRLSAFIYSIVGDDSIV-- 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   L   +    PVN   +       ++ Y N     +  LPYDIDG+V KV+ +S Q
Sbjct: 231 SQENALNTAKEYDLPVNPNFKLCKNIDEVIDYINYWTEHKKDLPYDIDGIVIKVNSYSTQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW  ++KF E++ +T+LLD+++ +GRTGI+TPVA L+P+ I G+ ++ A+
Sbjct: 291 EKVGYTQKSPRWATAYKFPEEELATKLLDVELSVGRTGIITPVAILDPIVISGSTVSKAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D I+ L           DI + D V+VK+AGE+IPKVV ++   R   +  +  P+
Sbjct: 351 LHNKDIIEEL-----------DIHIDDMVVVKKAGEIIPKVVRVVRELRTESSTKYVMPN 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C  +     N          RC     C  Q + R+ HF SRDA NIEGLG + + 
Sbjct: 400 TCPSCGQQTYTKENDP------FTRCKNP-DCPDQNIRRIIHFASRDALNIEGLGDKVVA 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++    A +I    D+F+L+R +  S  ++      G+ S  NL ++I   +  SL++
Sbjct: 453 TLYEKGIIAHTI----DLFSLEREKLISLDRM------GEKSADNLLNAIENSKKSSLDK 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGI +VG +  + LA+ YL+  N      + +          + +  VG I A++I
Sbjct: 503 VIFALGILNVGKKAGKILAEKYLNLSNLMNATLDEL----------VNLDDVGQITAESI 552

Query: 613 VEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +++  +  NI  +  L+K  ++P     E N  +    K +V TG L ++ R++A+EY+ 
Sbjct: 553 LDYLSDENNIKFINDLIKVGMNPQYEIQEVNTDNIFAGKTVVLTGKLVELTRNEAKEYLE 612

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + GA V+  ++ KTD++I G+  GSKL KA+QLG+K++NEE+F  ++++
Sbjct: 613 KYGAKVTGSVTSKTDLVIAGEKAGSKLAKAEQLGIKVINEEEFANMVRE 661


>gi|282919739|ref|ZP_06327471.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C427]
 gi|282316377|gb|EFB46754.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C427]
          Length = 667

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 375/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKDPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + +   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIHD-----------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L         ++          V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +  +   I   +     E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++IVG++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIVGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|82751560|ref|YP_417301.1| DNA ligase [Staphylococcus aureus RF122]
 gi|123754599|sp|Q2YU70|DNLJ_STAAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|82657091|emb|CAI81528.1| DNA ligase [Staphylococcus aureus RF122]
          Length = 667

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/715 (33%), Positives = 373/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R   A  +  P+
Sbjct: 351 LHNEDLIHD-----------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEGAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L         ++          V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +  +   I   +     E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|329954852|ref|ZP_08295869.1| DNA ligase [Bacteroides clarus YIT 12056]
 gi|328526956|gb|EGF53967.1| DNA ligase [Bacteroides clarus YIT 12056]
          Length = 665

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/707 (32%), Positives = 363/707 (51%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D   R    +    P+    +D N P  
Sbjct: 3   IKEKIDQLRADLHRHNYNYYVLNTPEISDKEFDDRMRELQELEKEHPEY---QDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYDRVKKALN----EDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP +L  N P + E+RGE+ +   
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLILHGNYPALFEIRGEILMPWE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L    E+   G Y
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ     GF ++   ++A++   +  Y     + R  LP   DG+V KV+    QK L
Sbjct: 235 ENLQAAAGWGFKISEHTKKAHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    +C  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIRYEGE------AAHYCPNETSCPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++ L       T  I+N+   G+ S  N+   I   + +  ER +
Sbjct: 458 YR----LGLIKNTADLYQLT------TDDIKNLDRMGEKSAENIIKGIEASKEVPFERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +          N+I    N +   LI +  +G+ IAQ+I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSF----------NDIDELENANLEKLINIDEIGEKIAQSILA 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ NP N   VE L         R E       ++  + +V +G      R + +E + +
Sbjct: 558 YFANPLNRELVERLKSTGLQLYRREEDLSGYTDKLAGQSIVISGVFAHHSRDEYKELIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G +KLEKA +LG++IM+E++FL L+
Sbjct: 618 NGGKNVGSISAKTSFILAGENMGPAKLEKAHKLGIRIMSEDEFLALI 664


>gi|254976908|ref|ZP_05273380.1| DNA ligase [Clostridium difficile QCD-66c26]
 gi|255308381|ref|ZP_05352552.1| DNA ligase [Clostridium difficile ATCC 43255]
 gi|255316048|ref|ZP_05357631.1| DNA ligase [Clostridium difficile QCD-76w55]
 gi|255518705|ref|ZP_05386381.1| DNA ligase [Clostridium difficile QCD-97b34]
 gi|255651827|ref|ZP_05398729.1| DNA ligase [Clostridium difficile QCD-37x79]
 gi|306521614|ref|ZP_07407961.1| DNA ligase [Clostridium difficile QCD-32g58]
          Length = 674

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/706 (31%), Positives = 382/706 (54%), Gaps = 50/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N
Sbjct: 3   VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPTN 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+      ++ H  P LSL   ++ +DLR F  R+  +       ++ + +E KIDG
Sbjct: 60  RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVG----ENVEYVVEFKIDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK+
Sbjct: 116 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 173

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           +F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E   +   
Sbjct: 174 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHS 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++
Sbjct: 234 ESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEM 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHN
Sbjct: 294 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 353

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP
Sbjct: 354 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    +R          AA +C   ++C AQ    + HFVSRDA NI+GLG+  +    
Sbjct: 403 VCSEPTIRLEGE------AAVKCIN-MSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 455

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             +     I+  +D++ +++       ++      G+ S  NL +SI K +   L R I 
Sbjct: 456 NEKI----IQDVSDLYYIKKEDVVDLERM------GEKSADNLINSIEKSKENDLWRLIN 505

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI+ +G + A+ LA  +       ++++ +I+  ++       +   G I+A ++VEF
Sbjct: 506 GLGIKFIGVKAAKILAYNF-------KDLDEVISATSEQLEE---LEEFGSIMANSVVEF 555

Query: 616 YQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++  +N+  +  L      + S+    + V    E  K+V TGTL  ++R+ A++ + + 
Sbjct: 556 FKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEKR 615

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 616 GGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 661


>gi|265764018|ref|ZP_06092586.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16]
 gi|263256626|gb|EEZ27972.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16]
          Length = 665

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/708 (32%), Positives = 364/708 (51%), Gaps = 52/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D L R    +    P+    +D N P  
Sbjct: 3   VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKALN----EDFEICCEMKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
           T I++ YE GK + A  RGDG  G+DV+  ++ I +IP +L   N PE+ E+RGE+ +  
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLILHGDNYPEVFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L     +   G 
Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    Q+ 
Sbjct: 235 YENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + C
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSARFMIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I   AD++ L       T  I  +   GD S  N+   I + + +  ER I
Sbjct: 458 YR----LGLIHDTADLYQLT------TDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVI 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D  +LI +  +G+ IA++I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSFKDIEEL----------ENADLETLINIDEIGEKIARSILN 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ N  N   V  L K     + R E+++S    ++  + +V +G      R + ++ + 
Sbjct: 558 YFANESNRKLVGRL-KTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTYHSRDEYKDLIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 617 KHGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|260684853|ref|YP_003216138.1| DNA ligase [Clostridium difficile CD196]
 gi|260688511|ref|YP_003219645.1| DNA ligase [Clostridium difficile R20291]
 gi|260211016|emb|CBA66332.1| DNA ligase [Clostridium difficile CD196]
 gi|260214528|emb|CBE07046.1| DNA ligase [Clostridium difficile R20291]
          Length = 677

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/706 (31%), Positives = 382/706 (54%), Gaps = 50/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N
Sbjct: 6   VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPTN 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+      ++ H  P LSL   ++ +DLR F  R+  +       ++ + +E KIDG
Sbjct: 63  RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVG----ENVEYVVEFKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK+
Sbjct: 119 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           +F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E   +   
Sbjct: 177 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHS 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++
Sbjct: 237 ESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEM 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHN
Sbjct: 297 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP
Sbjct: 357 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    +R          AA +C   ++C AQ    + HFVSRDA NI+GLG+  +    
Sbjct: 406 VCSEPTIRLEGE------AAVKCIN-MSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             +     I+  +D++ +++       ++      G+ S  NL +SI K +   L R I 
Sbjct: 459 NEKI----IQDVSDLYYIKKEDVVDLERM------GEKSADNLINSIEKSKENDLWRLIN 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI+ +G + A+ LA  +       ++++ +I+  ++       +   G I+A ++VEF
Sbjct: 509 GLGIKFIGVKAAKILAYNF-------KDLDEVISATSEQLEE---LEEFGSIMANSVVEF 558

Query: 616 YQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++  +N+  +  L      + S+    + V    E  K+V TGTL  ++R+ A++ + + 
Sbjct: 559 FKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEKR 618

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 619 GGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 664


>gi|160872442|ref|ZP_02062574.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
 gi|159121241|gb|EDP46579.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
          Length = 674

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/697 (35%), Positives = 392/697 (56%), Gaps = 47/697 (6%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           + H+  YY    P+I D+ YD L R  +AI   +P+L     P+ P  ++G     +   
Sbjct: 20  NTHNYHYYILDAPLINDATYDTLFRELEAIEKRYPELI---TPDSPTQRVGSTPLTTFKH 76

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H++P LSLE  ++ +++  F  RI    Q ++  +I +  EPK+DG  +++ Y KG+ 
Sbjct: 77  VQHALPMLSLENAFSEKEVLAFNKRIQERLQTQE--AIEYACEPKLDGIAVSLTYHKGQL 134

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           + AA RGDGH GED++  IR I +IP  L   + P  +EVRGEVYI K  F  LN+ +  
Sbjct: 135 IRAATRGDGHRGEDITLNIRTILSIPLKLQGQHYPNDLEVRGEVYIPKKKFQQLNEMLKK 194

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT-SEIFAKGQYEMLQKMRCLG 265
            G K + NPRNAA+G LR+LNP     R L FF H +G   +   A     +L + +  G
Sbjct: 195 KGEKMFVNPRNAAAGSLRQLNPKITAERPLAFFTHSIGIIKNGKLASTHTAILNQFQQWG 254

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            P     + A      ++YY++++  R++LPY+IDG+VYKV+  +LQKQLG  +R+PRW 
Sbjct: 255 LPRCPQTQLAKNITAALAYYHKIQKERASLPYEIDGVVYKVNALALQKQLGFISRAPRWA 314

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           +++KF  ++AST++L I+ Q+GRTG LTPVARL+PV +GGA ++NATLHN D +K     
Sbjct: 315 LAYKFPAEEASTKILSIEFQVGRTGALTPVARLQPVFVGGATLSNATLHNMDEVKR---- 370

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  +DIR GD V+++RAG+VIP+VV +I  +R  + +P + P  CPIC S +++  
Sbjct: 371 -------KDIREGDTVIIRRAGDVIPEVVQVIKKKRPANTRPLTLPKQCPICCSAIIKVE 423

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RC+G L C  Q+ E +KHF SR A NIEGLG +       +      I+
Sbjct: 424 TE------AIARCSGALFCPLQRKEAIKHFASRQAMNIEGLGTKIAYQLVDT----GLIQ 473

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
             ++++ L  +Q  +         FG+ S   L+ +I   +  +L RF++SLGIR VG  
Sbjct: 474 DVSNLYHLTIKQLAALD------HFGEKSAQKLHRAIQASKKTTLTRFLYSLGIRDVGIS 527

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A +LA+++ + +      + ++            +P +G ++A  I +F+    N+  +
Sbjct: 528 TALNLAQHFQALKPIMDADSALLQ----------TIPDIGPVVATHIKKFFSEQHNLDVI 577

Query: 626 EA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           +         P       + +S    K +V TG+L  + R +A + + +LG  VS+ +S+
Sbjct: 578 KNLLAAGITWPKPEFIPPSQTSPFTGKNVVLTGSLSTLSREQATQLLQKLGTKVSSSVSK 637

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            TD +I GDNPGSKL +A  L + ++ E++FL LL++
Sbjct: 638 NTDYVIAGDNPGSKLTRAHALKLTVLTEKKFLELLKE 674


>gi|257436941|ref|ZP_05612983.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M876]
 gi|282914702|ref|ZP_06322487.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M899]
 gi|257283730|gb|EEV13855.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M876]
 gi|282321416|gb|EFB51742.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M899]
          Length = 667

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/715 (33%), Positives = 373/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +D RKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDFRKFDQRIREQI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + +   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIHD-----------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L         ++          V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +  +   I   +     E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|255102476|ref|ZP_05331453.1| DNA ligase [Clostridium difficile QCD-63q42]
          Length = 674

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/706 (31%), Positives = 382/706 (54%), Gaps = 50/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N
Sbjct: 3   IKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPTN 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+      ++ H  P LSL   ++ +DLR F  R+  +       ++ + +E KIDG
Sbjct: 60  RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVG----ENVEYVVEFKIDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK+
Sbjct: 116 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 173

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           +F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E   +   
Sbjct: 174 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHS 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++
Sbjct: 234 ESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEM 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHN
Sbjct: 294 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 353

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP
Sbjct: 354 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    +R          AA +C   ++C AQ    + HFVSRDA NI+GLG+  +    
Sbjct: 403 VCSEPTIRLEGE------AAVKCIN-MSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 455

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             +     I+  +D++ +++       ++      G+ S  NL +SI K +   L R I 
Sbjct: 456 NEKI----IQDVSDLYYIKKEDVVDLERM------GEKSADNLINSIEKSKENDLWRLIN 505

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI+ +G + A+ LA  +       ++++ +I+  ++       +   G I+A ++VEF
Sbjct: 506 GLGIKFIGVKAAKILAYNF-------KDLDEVISATSEQLEE---LEEFGSIMANSVVEF 555

Query: 616 YQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++  +N+  +  L      + S+    + V    E  K+V TGTL  ++R+ A++ + + 
Sbjct: 556 FKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEKR 615

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 616 GGKATSSVSKSTTFVLAGEEAGSKLTKASDLGIKVIDEERFLELLK 661


>gi|288572809|ref|ZP_06391166.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568550|gb|EFC90107.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 674

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/704 (32%), Positives = 367/704 (52%), Gaps = 49/704 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +   SL++EI+ HD  YY    P I DS YD + R    +    P L      + P  ++
Sbjct: 8   RRYESLKKEIARHDRLYYVLDSPEIDDSSYDRMMRELLELEREHPTLV---SDDSPSRRV 64

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG       KV HS P LSL+ ++++ +LR F++R          +S  +  E KIDG  
Sbjct: 65  GGRPLDGFLKVVHSHPMLSLDDVFDVSELRSFLSR-----ATGPVSSFPWVCELKIDGLA 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ YE G FV  A RGDG  GEDV++ +  + ++P  L++++P  +EVRGEVY++KN F
Sbjct: 120 VSLIYEDGVFVGGATRGDGSVGEDVTSNLLTVRSLPLRLNIDVPGRLEVRGEVYMAKNSF 179

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             LN+     G   +ANPRNAA+G LR+L+P     R L+ FV+ +    E     Q ++
Sbjct: 180 ARLNERREEKGDPLFANPRNAAAGSLRQLDPRVAAERRLDLFVYAVVSPEERGINSQSDL 239

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  ++  G PV +     +    +  +    +  R +L Y  DG+V K D      +LG 
Sbjct: 240 LSWLKKAGLPVQDAWELCSDLDEVEEFVARWQEERFSLSYVTDGVVVKADPVEQWGRLGR 299

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            AR+PRW +++K+  ++ +T L +I+I +GRTG +TPVA LEPV + G+++  A+LHNED
Sbjct: 300 TARAPRWAVAYKYPPEEKTTVLKEIEISVGRTGAMTPVAILEPVQLAGSVVRRASLHNED 359

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +D+R+GDRV V++AGE+IP++V +    R+    PF  P  CPIC
Sbjct: 360 EIRR-----------KDVRIGDRVKVRKAGEIIPEIVSVDSEARNGTEIPFEMPRNCPIC 408

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S  VR  +       +A RC    +C AQ  E L+HF SR   +I GLG++       S
Sbjct: 409 GSEAVRLPDE------SAWRCPNK-SCPAQMNEELRHFASRGCMDIRGLGERVASQLVGS 461

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +R  AD++ L+  Q  S  ++      G  S +NL  +I   ++  L   +  L
Sbjct: 462 ----GFVRDLADLYELKEEQIISLDRM------GPKSASNLISAIRGSKDRPLAALLAGL 511

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG  +A  L + Y S +   +           D   L  +  VG  IA ++  F+ 
Sbjct: 512 GIRHVGKGVAELLVERYGSMEALRRA----------DPEELGSIEGVGPAIAASLEAFFS 561

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +  NI  ++ L+        R  +  S    +     VFTG L++  R +AQ+ V  +G 
Sbjct: 562 DDGNIRTLDRLMDHGVRMEERRPETSSDGKLLSGMTFVFTGELKRASRSEAQKLVKSMGG 621

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             ++ +S KT  ++ G++PGSKL+KA  LG+ +++E+ F  +++
Sbjct: 622 KATSSVSGKTSYVVAGESPGSKLDKAVSLGIPVLDEDGFYEMVE 665


>gi|329770498|ref|ZP_08261876.1| DNA ligase [Gemella sanguinis M325]
 gi|328836247|gb|EGF85916.1| DNA ligase [Gemella sanguinis M325]
          Length = 666

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/713 (33%), Positives = 397/713 (55%), Gaps = 50/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ ++E+  L + ++ +   YY    P I D+EYD L ++ + +   +P+L +    N 
Sbjct: 1   MKEIKEEIYKLVKLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEKEYPELIQE---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +     KVTH +P LSL   ++ EDLR F  RI +      +  I +  E K
Sbjct: 58  PTQRVGDVVLSEFEKVTHKVPMLSLSNTFSTEDLRDFDNRIKKVV---ANRKIEYICELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+I Y  GK + AA RGDG  GE+V+  I+ I +IP+VL  N  +  EVRGEVY+
Sbjct: 115 IDGLAISINYVNGKLISAATRGDGTVGEEVTDNIKTIFSIPKVLKDN--KTFEVRGEVYL 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  F  LN+E        +ANPRNAA+G LR+L+      R L+ F++ +    +   +
Sbjct: 173 PKKSFNILNEERKENNEVLFANPRNAAAGSLRQLDSKITAQRRLSAFIYSVV--GDNTIE 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q + L+       PVNN  +       +++Y       R  LPY+IDG+V KV+ +SLQ
Sbjct: 231 SQLQALKTAEEYELPVNNNYKLCKNIDEVINYIEYWDINRKNLPYEIDGIVIKVNSYSLQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW  + KF E++ +T+LLD+++ +GRTGI+TPVA+L+P+ I G+ ++ A+
Sbjct: 291 EEIGYTQKSPRWATAFKFPEEELATKLLDVELSVGRTGIVTPVAQLDPIVISGSTVSKAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D I  L           DI +GD V+VK+AGE+IPKVV ++   R  +++ +  P+
Sbjct: 351 LHNKDVIDEL-----------DIHIGDMVIVKKAGEIIPKVVRVLKELRLENSEKYIMPN 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +V   +          RC     C  Q + ++ HF SRDA NIEGLG + + 
Sbjct: 400 RCPSCNSELVSKKDDP------FIRCVNP-ECPEQNIRKIIHFASRDALNIEGLGDKVVA 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++       I    D+F+L+R +     ++      G+ SV NL  +I   +N SL++
Sbjct: 453 TLYEQ----GIISHTIDLFSLEREKLIDLDRM------GEKSVDNLLKAIENSKNSSLDK 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I++LGI +VG + A+ LA+ YL+         + +          I +P +G I A+++
Sbjct: 503 VIYALGILNVGKKAAKILAEKYLNLTTLMTATVDEL----------INLPDIGLITAESV 552

Query: 613 VEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++F  N  NI  +  L+   ++P     +    +    K +V TG L ++ R++A+EY+ 
Sbjct: 553 IDFLSNEINIKFINDLISIGMNPQYKVQKIEDDNIFSGKTIVLTGKLVELTRNEAKEYLE 612

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +LGA V+  ++ KTD+++ G+  GSKL KA+QLG+++++EE+F+ +L +    
Sbjct: 613 KLGAKVTGSVTTKTDLVLAGEKAGSKLAKAEQLGIQVISEEEFISMLGEKKVN 665


>gi|254882009|ref|ZP_05254719.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA]
 gi|254834802|gb|EET15111.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA]
          Length = 665

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/706 (33%), Positives = 363/706 (51%), Gaps = 50/706 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +              E K DGT 
Sbjct: 62  GSDINKNFTQVVHKYPMLSLANTYSETEVTEFYDRVKKSLN----EDFEICCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    
Sbjct: 118 ISLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPETFEIRGEILMPWVV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L     +   G YE
Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG
Sbjct: 237 NLKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+P+ + G ++  A+LHN 
Sbjct: 297 FTAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+GL           D+ +GD V V++ GE+IPK+V +  + R        F + CP 
Sbjct: 357 DIIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S++VR          AA+ CT   AC  Q   +++HF+SR A NI+GLG + +D F++
Sbjct: 406 CGSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQ 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  IR  AD++TL+      T+ I N+   G+ S  N+   I + + +  ER +F+
Sbjct: 460 E----GLIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ +AK + S    A    + + H          V  +G+ IAQ+I+ ++
Sbjct: 510 LGIRFVGETVAKKVAKSFKSMDALADASLDNLIH----------VDEIGEKIAQSILLYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            NP+N   +E L           E       ++  + +V +G      R + +E + + G
Sbjct: 560 ANPKNRDIIERLRVAGVRLEADEEDTSEHTDKLAGESIVISGVFAHHSRDEYKELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                 +S KT  I+ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 620 GKNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|150007448|ref|YP_001302191.1| DNA ligase [Parabacteroides distasonis ATCC 8503]
 gi|298375424|ref|ZP_06985381.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19]
 gi|166216223|sp|A6LA55|DNLJ_PARD8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149935872|gb|ABR42569.1| DNA ligase [Parabacteroides distasonis ATCC 8503]
 gi|298267924|gb|EFI09580.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19]
          Length = 664

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/709 (32%), Positives = 360/709 (50%), Gaps = 52/709 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++ +L  E+  H+  YY  S P I D E+D + +    +  A P+ A   DP+ P  
Sbjct: 2   VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTR 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +++    +V H  P LSL   ++ +++R F  R  R              E K DG
Sbjct: 59  RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSLN----EPFEIVAELKYDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YEKG+   A  RGDG  G+DV+A I+ I ++P  L   + PE  E+RGEV +  
Sbjct: 115 TSISLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPW 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            +F  LN E        +ANPRNAASG L++ NP  +  R L+ + + L     + A+G 
Sbjct: 175 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYL-LGENLPAEGH 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ  R  GF + + +R+  +   I  Y       R  LP   DG+V KV+    Q+ 
Sbjct: 234 YENLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRN 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G ++  A+LH
Sbjct: 294 LGFTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433
           N D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   
Sbjct: 354 NADIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRV 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +VR          AAH C     C  Q   R++HFV+R A NI  +G + ++ 
Sbjct: 403 CPECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNI-NIGPETVED 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            +     A  ++  AD++TL         +      + + S  NL  S+ + + +  ER 
Sbjct: 456 LYN----AGYVKDSADLYTLTVADLLRLER------WAEKSAQNLMSSLEESKQVPFERV 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR VG  +A+ L   + S +   Q               L+ V  +G+ IAQ+++
Sbjct: 506 LFGLGIRFVGETVAKRLVSAFHSIEALEQA----------SLEDLVAVDEIGERIAQSVL 555

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            ++ + +N   V  L ++        E+    S +++   +V +GT  K  R + +  + 
Sbjct: 556 SYFSDEKNRTLVNRLKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIE 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           Q G   S  +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+
Sbjct: 616 QHGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664


>gi|148557620|ref|YP_001265202.1| DNA ligase, NAD-dependent [Sphingomonas wittichii RW1]
 gi|190359290|sp|A5VFJ8|DNLJ_SPHWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148502810|gb|ABQ71064.1| DNA ligase, NAD-dependent [Sphingomonas wittichii RW1]
          Length = 708

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/737 (38%), Positives = 418/737 (56%), Gaps = 62/737 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +  QA + L+ L  EI+ H+  Y+    P I D++YDAL R   A+   +P L R+   +
Sbjct: 3   TESQAAERLAFLAAEIARHNALYHGEDAPEISDADYDALMRENAALEAEYPHLVRA---D 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G   +  L KV H+ P LSL+  +  ED+  F+ R+ R+     +  +  T EP
Sbjct: 60  SPSKLVGAAPSGHLAKVAHAQPMLSLDNAFADEDVVDFVGRVRRYLSLGAEEPVALTAEP 119

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEV 187
           KIDG   ++RYEKG  V AA RGDG +GEDV+A +R I  IP  L         P++ E+
Sbjct: 120 KIDGLSCSLRYEKGVLVLAATRGDGTTGEDVTANVRTIDDIPERLRGGDLLSSPPDVFEI 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNP-TDITRYLNFFVH 241
           RGEVY++K DF ALN  ++A    P     +ANPRNAA+G LR+ +P    +R L F  H
Sbjct: 180 RGEVYMAKADFAALNARLLAEAEDPAKARQFANPRNAAAGSLRQKDPGVTASRPLRFLAH 239

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G G+ S + A  Q  ++  +   G PV++   + +     +S+Y  +++ R+ LP+DIDG
Sbjct: 240 GWGEVSALPADTQKGVMDAIAAWGLPVSDDFVRVDGAAQALSHYRAIEAKRADLPFDIDG 299

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD    QK+LG  AR+PRW I+HKF  ++A T L DIDIQ+GRTG LTPVARLEPV
Sbjct: 300 VVYKVDRLDWQKRLGFVARAPRWAIAHKFPAEKAQTLLKDIDIQVGRTGKLTPVARLEPV 359

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG ++TNATLHN D I  L           D+  GDRV+V+RAG+VIP++V+ +   R
Sbjct: 360 TVGGVVVTNATLHNADEIGRL-----------DVHPGDRVVVQRAGDVIPQIVENL--SR 406

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                P+ FP  CP C S   R+           +RCTGGL C AQ++ERL+HFVSR A 
Sbjct: 407 DETRDPWPFPQTCPECGSAAEREPGE------VDYRCTGGLICPAQRVERLRHFVSRHAL 460

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG   ++ FF+       ++ PADIF L +    +  +      + +VS  NL  +
Sbjct: 461 DIEGLGLTHIESFFRD----GLVQSPADIFRLTKDILLTRER------WAEVSAGNLIAA 510

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND-------- 593
           I+ +R+  L+RF+F+LGIRHVG   AR LA+ Y S++     I+  I   +         
Sbjct: 511 IDAKRHPPLDRFLFALGIRHVGEVTARDLARRYRSWEGLKAMIDRTIEARDAAVQAIGET 570

Query: 594 ----------DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
                     +  +++  P VG  +A A+V+F+  P N  AV  LL ++ P+   HE   
Sbjct: 571 DEKFAARTAKELAAIVETPGVGPEVALALVDFFAEPHNADAVADLLSQLQPADVIHETRA 630

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
            SE+  K +VFTGTL+ + R +A+     LGA V+  +S KTD+++ G   GSKL+KA  
Sbjct: 631 -SEVSGKTVVFTGTLETMSRDEAKAQAEALGAKVAGSVSAKTDLVVAGPGAGSKLKKASD 689

Query: 704 LGVKIMNEEQFLFLLQQ 720
           LG+ + +E  +  ++  
Sbjct: 690 LGIAVTDEAGWAKIVAD 706


>gi|229551868|ref|ZP_04440593.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1]
 gi|258539286|ref|YP_003173785.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705]
 gi|229314812|gb|EEN80785.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1]
 gi|257150962|emb|CAR89934.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705]
          Length = 674

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 372/716 (51%), Gaps = 51/716 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A  E++ L ++++     YY    P + D+ YD   R   A+  AFP L  
Sbjct: 5   PAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    +++ 
Sbjct: 64  --TPDSPTQQVGDVINSDFAKVRHPIPMLSMGDVFSFEELSEWDARM----QANVGHAVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE G+ V  + RGDG+ GEDV+  +  I ++P+ L    P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNIGEDVTKNVLTIASVPKTLK--RPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGE Y+ K  F  LN    A G  P+ANPRNAA+G LR+LNP     R L+ F++ L   
Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPKITAGRELDTFIYTLIDA 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K Q+E +  M+ LGF  N     A+    I +Y  +  S R  LPY IDG+V KV
Sbjct: 236 DRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  +  
Sbjct: 356 TVARATLHNADMIRD-----------KDIRIGDTVMLHKAGDIIPEVSRVLVKKRPANTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEECPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +      +     +   AD++ L         K      F + S+ NL ++IN  R
Sbjct: 458 GPKIIAQLQAKK----LVTDVADLYRLTATDLEKLDK------FKEKSINNLLNAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++ S                 D   +  +P +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGSLDELMAA----------DQDQVAAIPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+A+V +++       VE L         +         S +  K +V TG   +  R
Sbjct: 558 TIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPTRPAVSDSFVSGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + + QLGA V+  +S+KTD++I GD  GSKL KAQ L V IM+E   L  L+
Sbjct: 618 PELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLTNLK 673


>gi|118470314|ref|YP_886705.1| NAD-dependent DNA ligase LigA [Mycobacterium smegmatis str. MC2
           155]
 gi|166216211|sp|A0QUW7|DNLJ_MYCS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118171601|gb|ABK72497.1| DNA ligase, NAD-dependent [Mycobacterium smegmatis str. MC2 155]
          Length = 701

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/732 (30%), Positives = 353/732 (48%), Gaps = 47/732 (6%)

Query: 1   MKKRQLIPIEALSIE----QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCD 56
           M ++    +EA   E      R+    L  E+  H   YY    PII D+E+D L R   
Sbjct: 1   MSEKATGEVEAELPEHPDADERRRWQELADEVREHQFRYYVKDAPIISDAEFDKLLRELQ 60

Query: 57  AIAHAFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY 115
           A+  A P+L     P+ P   +GG           H    LSL+ +++ ++L  +  RI 
Sbjct: 61  ALEDAHPEL---RTPDSPTQLVGGAGFATEFAPAEHLERMLSLDNVFDSDELTAWAARIS 117

Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
                       F  E KIDG  +++ Y  G+    A RGDG +GEDV+   R I  IP 
Sbjct: 118 SETGDAAH----FLCELKIDGVALSLVYRDGRLERGATRGDGRTGEDVTLNARTIDDIPE 173

Query: 176 VLS----LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD 231
            L+      +P ++EVRGEV+    DF  LN  ++A G+ P+ANPRN+A+G LR+ NP  
Sbjct: 174 RLTPSDEFPVPAVLEVRGEVFFRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAV 233

Query: 232 ITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
             R  L    HG+G T        ++  + +   G PV+    + +T   +         
Sbjct: 234 TARRKLRMICHGIGYTEGFTPASLHDAYRALGAWGLPVSEHTTKVSTVAEVAERIAYWGE 293

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  + ++IDG+V KVDE +LQ++LG  +R+PRW +++K+  ++A+T+LLDI + +GRTG
Sbjct: 294 HRHDVEHEIDGVVVKVDEVALQRRLGATSRAPRWAVAYKYPPEEATTKLLDIRVNVGRTG 353

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TP A +EPV + G+ +  ATLHN   +K            + + +GD V++++AG+VI
Sbjct: 354 RVTPFAYMEPVKVAGSTVGLATLHNASEVKR-----------KGVLIGDTVVIRKAGDVI 402

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+V+  +V+ R    + F FP+ CP C + +         +  A  RC    +C AQ  E
Sbjct: 403 PEVLGPVVDLRDGTEREFEFPTHCPECGTEL-----APAKEGDADIRCPNSRSCPAQLRE 457

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
           RL H   R AF+IEGLG +       ++     I    D+FTL       T       G 
Sbjct: 458 RLFHLAGRGAFDIEGLGYEAATALLAAQ----VIPDEGDLFTLTADDLLRTELFTTKKGE 513

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              +   L  ++ K +   L R + +L IRHVG   AR+LA  + S +         +A 
Sbjct: 514 LSANGKRLLANLTKAKEQPLWRVLVALSIRHVGPTAARALATEFGSLEAIEAASEEELAA 573

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
                        VG  IA A+ +++    +   V+             + ++   +E  
Sbjct: 574 VE----------GVGPTIAAAVKDWFTVDWHRAIVDKWRAAGVRMADERDASIERTLEGL 623

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+L    R +A+E +   G   +  +S+KT  ++ GD PGSK +KA +LGV +++
Sbjct: 624 SIVVTGSLAGFSRDQAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAVELGVPVLD 683

Query: 711 EEQFLFLLQQYN 722
           E+ F  LL+Q  
Sbjct: 684 EDGFRRLLEQGP 695


>gi|194466912|ref|ZP_03072899.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23]
 gi|194453948|gb|EDX42845.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23]
          Length = 680

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/725 (33%), Positives = 384/725 (52%), Gaps = 50/725 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M ++Q  P++ L++++A+ E+  L  +++     YY+   P + D  YD   +R   +  
Sbjct: 1   MSEKQ-TPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L      + P  ++GG     L KV H IP LS+  +++IE+L  F  R      +
Sbjct: 60  QFPQLV---SADSPTQRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQRQQE--NR 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             +    + LE KIDG  +++ YE GK V  + RG+G  GEDV+A +R I ++P  L   
Sbjct: 115 DVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGAIGEDVTANVRTIKSVPAELPE- 173

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            P  IEVRGE Y+ K  F  LN +  A G   +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 174 -PLSIEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELDTF 232

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ + +  ++  K Q E L +MR LGF VN   +  +T   I  Y  E  + R  L Y I
Sbjct: 233 MYYVPEYQKLGVKTQAEALDRMRELGFNVNPNNQVVHTREEIEKYIEEYTAQRDKLTYGI 292

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++   +  LG   + PRW I++KF  ++ +T + DI   +GRTG +TP A ++
Sbjct: 293 DGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAVMD 352

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY+             +DIR+GD V + +AG++IP++  + + 
Sbjct: 353 PVQLAGTTVSRASLHNPDYLH-----------EKDIRIGDTVYLHKAGDIIPEISKVDLT 401

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D+  +  P+ CP+C S +V            A RC   + C AQ  E L HF SR+
Sbjct: 402 KRPADSVEYEIPTKCPVCGSELVHLDGE------VALRCINPM-CPAQIKEGLAHFASRN 454

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +  E     I   A ++ L   Q  +  K      FG+ S  NL 
Sbjct: 455 AMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLTLDK------FGEKSTANLL 504

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            SI+  RN S+ER +F LGIRHVGA+ AR + +++    +  +           D   + 
Sbjct: 505 TSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFGDLDSLMKA----------DADEIS 554

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTG 656
            +  +G  I ++IV ++ N + +  ++ L +          R   N  SE   +++V TG
Sbjct: 555 AISGIGPTIGESIVTYFANQQVVKLIDELREVGVNFAYLGSRSNANPDSEWNGRRVVLTG 614

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L ++ R +A+ ++   GA V+  +S+KTDI+I G + GSKL KAQ LG+ + NE+QF  
Sbjct: 615 KLTEMTRGEAKSWLENHGAKVTGSVSKKTDIVIAGADAGSKLTKAQDLGIDVWNEQQFSQ 674

Query: 717 LLQQY 721
            +++ 
Sbjct: 675 AMKEE 679


>gi|256839697|ref|ZP_05545206.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13]
 gi|256738627|gb|EEU51952.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13]
          Length = 664

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/709 (32%), Positives = 360/709 (50%), Gaps = 52/709 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++ +L  E+  H+  YY  S P I D E+D + +    +  A P+ A   DP+ P  
Sbjct: 2   VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTR 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +++    +V H  P LSL   ++ +++R F  R  R              E K DG
Sbjct: 59  RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSLN----EPFEIVAELKYDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YEKG+   A  RGDG  G+DV+A I+ I ++P  L   + PE  E+RGEV +  
Sbjct: 115 TSISLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPW 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            +F  LN E        +ANPRNAASG L++ NP  +  R L+ + + L     + A+G 
Sbjct: 175 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYL-LGENLPAEGH 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ  R  GF + + +R+  +   I  Y       R  LP   DG+V KV+    Q+ 
Sbjct: 234 YENLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRN 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G ++  A+LH
Sbjct: 294 LGFTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433
           N D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   
Sbjct: 354 NADIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRV 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +VR          AAH C     C  Q   R++HFV+R A NI  +G + ++ 
Sbjct: 403 CPECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNI-NIGPETVED 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            +     A  ++  AD++TL         +      + + S  NL  S+ + + +  ER 
Sbjct: 456 LYN----AGYVKDSADLYTLTVADLLRLER------WAEKSAQNLMSSLEESKQVPFERV 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR VG  +A+ L   + S +   Q               L+ V  +G+ IAQ+++
Sbjct: 506 LFGLGIRFVGETVAKRLVSAFHSIEALEQA----------SLEDLVAVDEIGERIAQSVL 555

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            ++ + +N   V  L ++        E+    S +++   +V +GT  K  R + +  + 
Sbjct: 556 SYFSDEKNRTLVNRLKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIE 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           Q G   S  +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+
Sbjct: 616 QHGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDTFLNMLE 664


>gi|114797923|ref|YP_759116.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444]
 gi|122942770|sp|Q0C577|DNLJ_HYPNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114738097|gb|ABI76222.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444]
          Length = 701

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/691 (40%), Positives = 412/691 (59%), Gaps = 28/691 (4%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YYQ   P + D++YDAL++R  AI   FP L R    + P +++G E      K  HS P
Sbjct: 33  YYQNDAPELTDADYDALRQRNLAIEARFPALKRE---DSPTDRVGAEAGDGFAKARHSAP 89

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+  +  ED+  F  RI RF     + ++ FT EPKIDG  +++ YE GK + AA R
Sbjct: 90  MLSLDNAFTDEDVADFAVRIRRFLGLAPEETLAFTAEPKIDGLSLSLTYENGKLMRAATR 149

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GEDV+A  R +  IP  L     PE IEVRGEVY++K+ F  LN      GRK +
Sbjct: 150 GDGQTGEDVTANARTLGDIPVKLKGKGWPERIEVRGEVYMAKSAFADLNAREAEAGRKVF 209

Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+     +R L FF +     SE FA+ Q+E ++     GF  N+ +
Sbjct: 210 ANPRNAAAGSLRQLDVEITKSRPLRFFAYAWAAASEPFAQTQFEAVKAFADWGFVTNSRM 269

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
            +  T   ++SYY E+++ R++L YDIDG+VYKVD    Q++LG  +R+PRW I+HKF  
Sbjct: 270 IRIKTVEEVLSYYQEIEAERASLEYDIDGVVYKVDRLDWQQRLGFVSRAPRWAIAHKFPA 329

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           ++A T LL IDIQ+GRTG LTPVARLEPV +GG +++NATLHNED I  L          
Sbjct: 330 EKAVTTLLGIDIQVGRTGSLTPVARLEPVTVGGVVVSNATLHNEDEIARL---------- 379

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
             ++ GD+V ++RAG+VIP+V+ ++         P++ P  CP+C S  VR+++   G+ 
Sbjct: 380 -GVKPGDKVEIQRAGDVIPQVLRVVE---PGQGAPWAMPDTCPVCGSAAVREIDD-AGRA 434

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
               RCTGGL C AQ +ERLKHFVSR A +I+GLG++Q+  F +      +++ P DIF 
Sbjct: 435 DVRRRCTGGLICPAQAVERLKHFVSRKALDIDGLGEKQVLLFHEK----GAVKAPQDIFR 490

Query: 513 LQRRQQ-TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           L++  +      +E   GFG  S   LY +I+ RR +   RF+  LGIR+VG   +   A
Sbjct: 491 LKKNIEAAGLPPLEEWEGFGAQSARKLYSAIDARRKVPFARFLNGLGIRYVGQTTSAQFA 550

Query: 572 KYYLSYQNFAQEINNIIAH--NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           + +LS+Q+F   +         ++ +  LI +  +G   A++++ F   P N   + ALL
Sbjct: 551 RSFLSWQSFWAAVKAAEEGGIESEAYNELIGIDGIGQAAARSLMAFEGEPHNREMLAALL 610

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           +EV        +   S +  K +VFTGTL+K+ R +A+   + LGA V+  +S KTDI+I
Sbjct: 611 EEVEVEDEIPAE-TGSPVTGKTVVFTGTLEKMTRDEAKARASALGAKVAGTVSAKTDIVI 669

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            G   GSKL KA+QLG+ +M E+++L L+ +
Sbjct: 670 AGPGAGSKLVKAEQLGLAVMTEDEWLALIGE 700


>gi|56696562|ref|YP_166919.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3]
 gi|81349987|sp|Q5LST6|DNLJ_SILPO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56678299|gb|AAV94965.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3]
          Length = 739

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/752 (38%), Positives = 430/752 (57%), Gaps = 59/752 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +A +EL+ L   ++  +  Y+    P I D++YDALK+R   I   FP L R   P
Sbjct: 1   MTEAEAAQELARLAGLLAQANLAYHTLDAPEISDADYDALKQRNAEIEARFPHLKR---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G        KV+H++  +SL   ++  D+  F   I ++     + ++ +T E
Sbjct: 58  DSPSEQVGARPGEGFSKVSHAVRMMSLGNAFDDADVADFDRSIRKYLGLDVETALAYTAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYE+G  V AA RGDG  GE+V+A  R I  IP  +    PE++EVRGEV
Sbjct: 118 PKIDGLSLSLRYEQGVLVQAATRGDGEVGENVTANARTIADIPARI-EGAPEVLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+S  DF ALN    A G K +ANPRNAA+G LR+L+      R L FF +  G+ SE  
Sbjct: 177 YMSHADFAALNTRQEAEGGKLFANPRNAAAGSLRQLDAAITRARPLRFFAYSWGELSEPL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+ Q + ++++  LGF  N   R+      ++++Y ++++ R+TL YDIDG+VYK+D+  
Sbjct: 237 AETQMQAIERLAGLGFQTNPLTRRCADLDAMIAHYRDIEAQRATLGYDIDGVVYKLDDLG 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG +++N
Sbjct: 297 LQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI G D+ G+ +R G+DIRVGD V V RAG+VIPK+ D+ +N+R   A PF F
Sbjct: 357 ATLHNEDYIAGRDSRGQEIRDGKDIRVGDWVQVYRAGDVIPKIADVDLNKRPEGANPFEF 416

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S  +R+      +  A  RCTGG+ C AQ +E+LKHFVSR AF+IEGLG +Q
Sbjct: 417 PEQCPECGSPAIRE------EGDAVRRCTGGVICPAQAVEKLKHFVSRAAFDIEGLGAKQ 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F         IR PADIF L+ R      +++N  G+G+ S TNL+ +I+ +R I L
Sbjct: 471 VEQFHAD----GWIREPADIFELRSRYGEGLQQLKNREGWGEKSATNLFQAIDDKRRIPL 526

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------------- 585
            R IF+LGIRHVG   A+ L+ +Y  +   A  ++                         
Sbjct: 527 ARLIFALGIRHVGEVGAKDLSLHYRDWDAMAAALDTARLAALAHRAADTAEEQERQQAQA 586

Query: 586 ------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
                              +       W  LI V  +G  +  ++ + + N     A + 
Sbjct: 587 EGRRARISDTRAAVIAAQEVPPEAAAAWADLIGVDGIGATLGLSLSDAFANGDERAAFDR 646

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L   ++  I        S +  K +VFTG+L+K+ R +A+     LGA V+  +S+KTD+
Sbjct: 647 LSAHLTV-IPPDAPARDSPVAGKTVVFTGSLEKMTRAEAKARAEALGAKVAGSVSKKTDL 705

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ G   GSKL+ A+ LG++ ++E+ +L L++
Sbjct: 706 LVAGPGAGSKLKTAESLGIETLDEDGWLKLIE 737


>gi|154498024|ref|ZP_02036402.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC
           29799]
 gi|150273014|gb|EDN00171.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC
           29799]
          Length = 664

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/708 (32%), Positives = 376/708 (53%), Gaps = 49/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E++ L  E++     YY    P + D ++D   RR + +  A PD       + P  ++
Sbjct: 5   QEIALLRAELNKASYEYYVLDNPTMSDYDFDHKLRRLEELEQAHPDQITE---DSPTRRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     +VTH +P  SL+ ++++E+L  F+ R+        D    F +EPK+DG  
Sbjct: 62  GGQVADGFQEVTHEVPLESLQDVFDLEELGDFVRRVQESL----DGKAEFDVEPKVDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y  G FV  A RGDG  GEDV+  ++ I ++P  L   IP++I VRGEVY+SK  F
Sbjct: 118 VALEYRDGLFVRGATRGDGRVGEDVTENLKTIRSLPLRLPEPIPQLI-VRGEVYMSKKVF 176

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             LN+E    G   +ANPRNAA+G LR+L+P     R L+  V  + K          E 
Sbjct: 177 EQLNEEREIRGEALFANPRNAAAGSLRQLDPKVAASRKLDIVVFNIQKAEGAEFSTHTET 236

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  +    F V        +   I +    +   R   PYDIDG V K++  + +K LG 
Sbjct: 237 LDYLERQQFRVIP-RTLCTSMEEIGTRIAAIGDGREEFPYDIDGAVVKLNSLADRKILGS 295

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+ PRW  ++K+  +Q  + + DI +Q+GRTG+LTP A ++PV + G  +TNATLHN+D
Sbjct: 296 TAKFPRWAAAYKYPPEQKESVVEDIVVQVGRTGVLTPKAVVKPVRLAGTTVTNATLHNQD 355

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           +I             +DIR+GD VLV++AGE+IP++V ++  +R     P+  P  CP+C
Sbjct: 356 FIT-----------EKDIRIGDTVLVQKAGEIIPEIVSVVKEKRPEGTVPYHLPDHCPVC 404

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            + V RD +       A  RCTG   C AQ L  L HF SRDA +I+GLG   ++     
Sbjct: 405 GAPVARDED------GAHIRCTGA-ECPAQLLRHLAHFASRDAMDIDGLGPAVMEALIS- 456

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  ++ PAD+++L      +   +  +   G  S  NL  +I++ +   L R +F+ 
Sbjct: 457 ---AGMVKTPADLYSL------APEAVAQLDRMGKKSAENLAAAIDRSKGAGLARLLFAF 507

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG +  + LA ++ +       ++ ++A   +D+ +   VP VG I A+++ ++  
Sbjct: 508 GIRQVGQKAGKILASHFST-------MDALLAATEEDFTA---VPDVGAITAKSLWDWLH 557

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           + ++   ++AL +E    +   +      +  K  V TG+L++  R +A   +  LG  V
Sbjct: 558 SHQSQHLIQAL-REAGVVMENTDAPTGDALTGKTFVLTGSLERFTRAEAGAQIEALGGKV 616

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           S  +S+KT  ++ G+  GSKL+KAQ LG+ ++ EE+FL +L++   T+
Sbjct: 617 SGSVSKKTSYVVAGEAAGSKLKKAQDLGIPVLTEEEFLIMLRELGATI 664


>gi|258508011|ref|YP_003170762.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG]
 gi|257147938|emb|CAR86911.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG]
 gi|259649339|dbj|BAI41501.1| DNA ligase [Lactobacillus rhamnosus GG]
          Length = 674

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 372/716 (51%), Gaps = 51/716 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A  E++ L ++++     YY    P + D+ YD   R   A+  AFP L  
Sbjct: 5   PAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    +++ 
Sbjct: 64  --TPDSPTQQVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QANVGHAVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE G+ V  + RGDG+ GEDV+  +  I ++P+ L    P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNVGEDVTKNVLTIASVPKTLK--RPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGE Y+ K  F  LN    A G  P+ANPRNAA+G LR+LNP     R L+ F++ L   
Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPKITAGRELDTFIYTLIDA 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K Q+E +  M+ LGF  N     A+    I +Y  +  S R  LPY IDG+V KV
Sbjct: 236 DRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  +  
Sbjct: 356 TVARATLHNADMIRD-----------KDIRIGDTVMLHKAGDIIPEVSRVLVKKRPANTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEKCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +      +     +   AD++ L         K      F + S+ NL ++IN  R
Sbjct: 458 GPKIIAQLQAKK----LVTDVADLYRLTATDLEKLDK------FKEKSINNLLNAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++ S                 D   +  +P +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGSLDELMAA----------DQDQVAAIPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+A+V +++       VE L         +         S +  K +V TG   +  R
Sbjct: 558 TIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPTRPAVSDSFVSGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + + QLGA V+  +S+KTD++I GD  GSKL KAQ L V IM+E   L  L+
Sbjct: 618 PELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLTNLK 673


>gi|145593768|ref|YP_001158065.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440]
 gi|190359283|sp|A4X487|DNLJ_SALTO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145303105|gb|ABP53687.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440]
          Length = 711

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/716 (31%), Positives = 357/716 (49%), Gaps = 43/716 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+  ++L +E++ H   YY    P I D+ +D   R   A+   FP L     P+ P  
Sbjct: 26  ARERHATLSRELTEHQYRYYVLDAPTISDAAFDEQLRELAALEAEFPAL---RTPDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     V H+   +SL+  ++ E+L  +  R+ R         + +  E K+DG
Sbjct: 83  RVGGAFSTDFTPVAHAERMMSLDNAFSDEELAAWAERVER----DAGGPVPYLCELKVDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEV 191
             I + YE+G+ V AA RGDG +GEDV+A +R+I  +P  L+ +     IP+++EVRGE+
Sbjct: 139 LAINLTYERGRLVRAATRGDGRTGEDVTANVRSIQDVPGELTPSAEFPEIPDLLEVRGEI 198

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y     F  LN  ++  GR P+ANPRNAA+G LR+ +P    +R L   VHG G      
Sbjct: 199 YFPVAGFADLNAGLVEQGRAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGFGARRGWA 258

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    +R  G P ++  R      G+  Y     + R  + ++IDG+V KVD  +
Sbjct: 259 PSTQSESYAALRTWGLPTSDRWRVVPGLAGVAEYVAHYAAHRHDVEHEIDGVVVKVDPVA 318

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I+ K+  ++ +TRLLDID+ +GRTG +TP A LEPV + G+ +  
Sbjct: 319 IQGRLGSTSRAPRWAIAFKYPPEEVNTRLLDIDVNVGRTGRVTPFAVLEPVRVAGSTVAL 378

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   ++            + + +GD V++++AG+VIP+V+  +V  R P+A+ F  
Sbjct: 379 ATLHNAREVER-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRPPEARSFVM 427

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP C + +         +     RC    +C AQ  ER+ H   R AF+IE LG + 
Sbjct: 428 PSRCPCCGTPL-----APAKEGDIDIRCPNTRSCPAQLRERVFHLAGRGAFDIEVLGYKG 482

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 +E     I    D+FTL   Q   +    N  G    +   L +++   +   L
Sbjct: 483 AAALLDAEI----ITDEGDLFTLDTAQLARSPFFVNKDGSLGSNAVKLLENLTVAKEREL 538

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LA+++ S +   Q     ++           V  VG  IA 
Sbjct: 539 WRVLVALSIRHVGPTAAQALARHFRSVEAIDQAGEEELSA----------VDGVGPTIAA 588

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ E++    +   V    +                +E   +V TGTL    R +A E +
Sbjct: 589 SVREWFAVAWHREVVRKWAEAGVRMAEEAVAQGPRPLEGVTVVVTGTLAGYSRDQAAEAI 648

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
              G  V+  +S+KT  ++VGDNPG+K EKA  L V +++EE F  LL       R
Sbjct: 649 QSRGGKVTGSVSKKTAFVVVGDNPGTKAEKAAGLKVPVLDEEGFQVLLDAGPEAAR 704


>gi|227509971|ref|ZP_03940020.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190577|gb|EEI70644.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 675

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/713 (33%), Positives = 370/713 (51%), Gaps = 53/713 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ +QA      L ++++   D YY Y  P + DS YD   ++   +   FP +    
Sbjct: 4   EDMTEQQAESAAQELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  K+G        KV H IP LSL  +++IE+L+ F  R        +     + 
Sbjct: 61  TPDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADR----LSDSESVPFEYN 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G  V  A RG+G  GED++  ++ I +IP+ LS   P  IEVRG
Sbjct: 117 CELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIPQRLS--RPINIEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ LN +    G  P+ANPRNAA+G LR+L+      R L+ F++ +    +
Sbjct: 175 ECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNVANYDD 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +  Q  ML++++ LGF +N   + A+    I  Y       R TL Y IDG+V KV+ 
Sbjct: 235 LESDTQSGMLEELKKLGFTINADYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIVIKVNS 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ+ LG   + PRW I++KF  ++A T + DI+  +GRTG++TP A ++ V + G  +
Sbjct: 295 LPLQRSLGATVKVPRWAIAYKFPPEEAETIVRDIEWTVGRTGVVTPTAVMDEVTLAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            +DIR+ D V + +AG++IP++   + ++R  D+QP+
Sbjct: 355 SRASLHNPDYLR-----------EKDIRISDTVKLHKAGDIIPEISTYVKDKRQVDSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S +V            A RC     C AQ  E L HF SRDA NI+GLG 
Sbjct: 404 EIPTKCPSCDSELVHLDEE------VALRCINP-QCPAQLKEGLTHFASRDAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   FK       +   A ++ L   Q  +  K      FG+ S  NL  +I   RN 
Sbjct: 457 KIIAQLFKKHM----LTDVAGLYELTFDQLMTLDK------FGEKSAGNLLTAIANSRNN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S ER +F LGIRHVGA+ AR +A+ + +           IA           +  +G II
Sbjct: 507 SCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDATAQEIA----------EIDTMGMII 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           A ++V ++  P++   +  L +               K   S    K+LV TG LQ I R
Sbjct: 557 ADSVVTYFSMPQSKELISQLKQVGVNMDYLGATDEDLKESDSVFNGKRLVLTGKLQHITR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +A  ++   GA VS  +S+KTDI++VG++PGSK +KA+ LG+++ +E +F  
Sbjct: 617 PEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIEVWDENRFAE 669


>gi|255013963|ref|ZP_05286089.1| DNA ligase [Bacteroides sp. 2_1_7]
 gi|301310547|ref|ZP_07216486.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3]
 gi|300832121|gb|EFK62752.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3]
          Length = 664

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/709 (32%), Positives = 360/709 (50%), Gaps = 52/709 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++ +L  E+  H+  YY  S P I D E+D + +    +  A P+ A   DP+ P  
Sbjct: 2   VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTR 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +++    +V H  P LSL   ++ +++R F  R  R              E K DG
Sbjct: 59  RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSLN----EPFEIVAELKYDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YEKG+   A  RGDG  G+DV+A I+ I ++P  L   + PE  E+RGEV +  
Sbjct: 115 TSISLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPW 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            +F  LN E        +ANPRNAASG L++ NP  +  R L+ + + L     + A+G 
Sbjct: 175 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYL-LGENLPAEGH 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ  R  GF + + +R+  +   I  Y       R  LP   DG+V KV+    Q+ 
Sbjct: 234 YENLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRN 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G ++  A+LH
Sbjct: 294 LGFTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433
           N D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   
Sbjct: 354 NADIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRV 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +VR          AAH C     C  Q   R++HFV+R A NI  +G + ++ 
Sbjct: 403 CPECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNI-NIGPETVED 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            +     A  ++  AD++TL         +      + + S  NL  S+ + + +  ER 
Sbjct: 456 LYN----AGYVKDSADLYTLTVADLLRLER------WAEKSARNLMSSLEESKQVPFERV 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIR VG  +A+ L   + S +   Q               L+ V  +G+ IAQ+++
Sbjct: 506 LFGLGIRFVGETVAKRLVSAFHSIEALEQA----------SLEDLVAVDEIGERIAQSVL 555

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            ++ + +N   V  L ++        E+    S +++   +V +GT  K  R + +  + 
Sbjct: 556 SYFSDEKNRTLVNRLKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIE 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           Q G   S  +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+
Sbjct: 616 QHGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664


>gi|317056400|ref|YP_004104867.1| DNA ligase, NAD-dependent [Ruminococcus albus 7]
 gi|315448669|gb|ADU22233.1| DNA ligase, NAD-dependent [Ruminococcus albus 7]
          Length = 659

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/706 (31%), Positives = 371/706 (52%), Gaps = 52/706 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A+K +  L + ++YH   YY   +  I D EYD L+     +  A PDL R    + P
Sbjct: 5   ESAKKRIDELVEILNYHSRLYYVEDRNEISDYEYDMLQNELKKLEAANPDLIRK---DSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE      KVTH +   SL+ +++ +++R+F+ R+         +   F +EPKI
Sbjct: 62  TQRVGGEAVSGFEKVTHKVQMGSLQDVFSFDEVREFVDRVRES-----VSDPVFVVEPKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ Y  G+    + RGDG  GE+V+  ++ + +IP  +  ++P +IEVRGEVY+ 
Sbjct: 117 DGLSVSLEYHDGQLTVGSTRGDGFVGENVTENLKTVRSIPVTIDSSLP-MIEVRGEVYMP 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           +N FL+L  E      +P+ NPRNAA+G LR+ +P     R L+ FV  + +        
Sbjct: 176 RNVFLSLIKEQEDNDEQPFKNPRNAAAGSLRQKDPKIAAKRKLDIFVFNVQQVDGKELTA 235

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             + L  ++ LGF      +Q +T   I++  NE+   R  LPYDIDG+V KVD+F  + 
Sbjct: 236 HKQSLDYLKELGFKTVPDYKQVSTSDEIIARINEIGESRFDLPYDIDGVVIKVDDFKHRD 295

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+ P+W +++KF  ++ +T+L+DI++ +GRTG +TPVA  EPV + G  ++ ATL
Sbjct: 296 ILGATAKVPKWAVAYKFPPEEKNTKLIDIELNVGRTGAVTPVAVFEPVFLAGTQVSRATL 355

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D I             ++I +GD + V++AG++IP+V+  +          F  P  
Sbjct: 356 HNQDLI-----------IEKNINIGDTIRVRKAGDIIPEVLGSVEK---NSEGAFMLPDE 401

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C +++V+  +       AA RC   + C AQ    + HF S+ A NI+GLG Q +  
Sbjct: 402 CPVCHTKLVKSEDE------AAVRCPN-VECPAQIFRSIVHFASKGAMNIDGLGPQIVRL 454

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              ++     I   AD++ ++     +         F + S  NL  +I K R++SL+R 
Sbjct: 455 LLDNK----LITSVADLYNIKEDDLLALD------SFKEKSAHNLVTAIEKSRSVSLDRL 504

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF LGIR++G   A+ L   +    +        I+           +   G ++AQ++ 
Sbjct: 505 IFGLGIRNIGQASAKLLCAKFGGLDSIMSATAEEISG----------IDGFGVVMAQSVY 554

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +     I  ++ L +    +    +         K  V TGTL  ++R+ A+E + + 
Sbjct: 555 NAFHEEHMIALIQRLKEC-GVNTEYEKVQQDDRFAGKTFVLTGTLPTLKRNDAKELIEKF 613

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   S  +S+KTD ++ G+  GSKL KAQ+LGVKI++EE+F+ +++
Sbjct: 614 GGKASGSVSKKTDFVLAGEEAGSKLTKAQELGVKIISEEEFMEMIK 659


>gi|282899989|ref|ZP_06307949.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505]
 gi|281195087|gb|EFA70024.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505]
          Length = 690

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/712 (31%), Positives = 361/712 (50%), Gaps = 53/712 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L + +      YY    PI+ D+ YD L R    +   +P+L  +   + P  ++
Sbjct: 12  QRVEELRKLLQQASYAYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTT---DSPTQRV 68

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDGT 137
           G         V H+IP  SLE  +N+E+L+ +  R  R          + +  E KIDG 
Sbjct: 69  GERPATHFSSVRHNIPLYSLENAFNVEELQSWNQRWIRHLPTPHSLTEVEYVAELKIDGA 128

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYIS 194
            + + Y+ G  V  A RGDG +GED++  +R I +IP  L    + + E +EVRGEV++ 
Sbjct: 129 ALALTYQNGVLVRGATRGDGITGEDITPNVRTIRSIPLRLNFDGIELIEKVEVRGEVFLP 188

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTSEIF 250
              F  +N +    G + +ANPRNA +G LR+L+P  +  R L+FF + L   G      
Sbjct: 189 LEVFKQINQKRQKAGEQLFANPRNAVAGTLRQLDPRVVAQRQLDFFAYTLHIPGLDDRSI 248

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A  Q+E LQ ++ LGF V+   +  ++   +  YY    + R   PY  DG+V K++ F 
Sbjct: 249 ANTQWESLQLLQKLGFRVDVNHKLCSSVDEVAQYYQYWNTERLNSPYMTDGVVVKLNAFK 308

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG   + PRW I+ K+A ++A TR+ +I + +GRTG LTP+A + PV + G  ++ 
Sbjct: 309 LQEQLGFTQKFPRWAIALKYAAEEAPTRVENIMVNVGRTGALTPLAEMRPVQLAGTTVSR 368

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D ++ L           DIR+GD V+V++AGE+IP+VV +I   R  D +PF  
Sbjct: 369 ATLHNSDRLREL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPNDTEPFIM 417

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C   VVR+L           RC    +C A     ++H+VSRDA +I+G+G++ 
Sbjct: 418 PTNCPVCGQPVVRELGE------VVTRCVNA-SCPAILKGEIEHWVSRDALDIKGIGEKL 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            +   AD++ L   Q     ++      G  S   L   I + +N   
Sbjct: 471 VHQLVDK----GLVHSVADLYNLTEEQLCGLERM------GKRSAEKLVQVIRESKNQPW 520

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++ LGIRHVG+  A+ L++ + +    A    + I            V  +G  IAQ
Sbjct: 521 SRVLYGLGIRHVGSVNAQLLSEKFTTVDKLASAKQSDIEG----------VYGIGVEIAQ 570

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKA 666
           ++ +++    N   +  L             +  +E    I  K  V TGTL  ++R +A
Sbjct: 571 SVYQWFHISANQNLIIRLETIGIQLATGKSVHARTEPNPQIAGKTFVITGTLPTLKRDEA 630

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + + G  V+  +S+KTD I+VG + GSKLEKAQ LG+K ++E   L +L
Sbjct: 631 KAMIQKAGGKVTDTVSKKTDFIVVGADAGSKLEKAQSLGIKQLDEANLLEML 682


>gi|167763098|ref|ZP_02435225.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC
           43183]
 gi|167699438|gb|EDS16017.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC
           43183]
          Length = 665

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/707 (32%), Positives = 362/707 (51%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D   R    +    P+    +D N P  
Sbjct: 3   VKEKIDQLRADLHRHNYNYYVLNAPEISDKEFDDRMRELQELEKEHPEY---QDDNSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDLNKNFTQVAHKYPMLSLGNTYSESEVTDFYDRVKKALN----EDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL  + PE  E+RGE+ +   
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGSYPESFEIRGEILMPWE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L    E+   G Y
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ     GF  +  +++A++   +  Y     + R  LP   DG+V KV+    QK L
Sbjct: 235 ENLQAAAGWGFKTSEHMKKAHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    +C  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIRYEGE------AAHYCPNETSCPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++ L          I+N+   G+ S  N+   I   + +  ER +
Sbjct: 458 YR----LGLIKNTADLYQLTA------DDIKNLDRMGEKSAENIIKGIEASKEVPFERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +          N+I    N +   LI +  +G+ IAQ+I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSF----------NDIDELENANLEKLINIDEIGEKIAQSILT 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ NP N   +E L         R E       ++  + +V +G      R + +E + +
Sbjct: 558 YFANPLNCELIERLKSTGLQLYRREEDLSGYTDKLAGQSIVISGVFTHHSRDEYKELIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G +KLEKA +LG+K+M+E++FL L+
Sbjct: 618 NGGKNVGSISAKTSFILAGENMGPAKLEKAHKLGIKLMSEDEFLTLI 664


>gi|323344237|ref|ZP_08084463.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269]
 gi|323094966|gb|EFZ37541.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269]
          Length = 665

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/707 (30%), Positives = 359/707 (50%), Gaps = 50/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L Q++  H+  YY  + P I D  +D +      +   +P   + +DPN P  +
Sbjct: 4   KQRISELRQQLHEHNYKYYVLNAPTISDQAFDFMMHELQDLEAKYP---KMDDPNSPTKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N    +V H  P LSL   +N +D+ ++  ++ R              E K DG 
Sbjct: 61  VGSDLNSEFKQVAHKYPMLSLANTYNEQDVEEWFEQVARGLM---GEEFEVCCELKYDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196
            I++ Y  G+ V    RGDG  G+DV+  ++ I  IP VLS N  P   E+RGE+ +   
Sbjct: 118 SISLTYVDGQLVQGVTRGDGIHGDDVTENVKTIRAIPLVLSGNDYPHEFEMRGEILMPWK 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+ LN   +  R+L+ +++ +    ++   G Y
Sbjct: 178 VFEQLNAEREANEEPLFANPRNAASGTLKSLNSRLVASRHLDSYLYYM-LGEQLPTDGHY 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E + K +  GF ++ G+R+  +   I  +     + R  LP   DG+V KV+    Q+ L
Sbjct: 237 ENMMKAKHWGFKISAGMRKVKSLQQIYDFIKHWDTERKNLPIATDGIVLKVNSLRQQRAL 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A T+L+++  Q+GRTG +TPVA +EPV + G  +  ATL+N
Sbjct: 297 GYTAKSPRWAIAYKFKAERACTKLVEVTYQVGRTGAVTPVANMEPVKLAGTTVKRATLNN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D+IK             D+ VGD V V++ GE+IPK+V + +++R  DA+P SF + CP
Sbjct: 357 ADFIKSF-----------DLHVGDYVYVEKGGEIIPKIVGVALDKRPADAKPISFITHCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + + R          AA+ C    AC  Q   R++HF++R A NI+ +G + +D ++
Sbjct: 406 ECGTPLARYEGE------AAYYCPNDTACPPQIKGRIEHFIARKAMNIDSIGPETVDDYY 459

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++ +         +  N  G  + S   +   I   + +  ER +F
Sbjct: 460 RR----GLIHNAADLYNIT-------VQDINGAGNREKSALKIVRGIASSKQVPFERVVF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   AR +A+++ +     +               L  V  VG++IA++++ +
Sbjct: 509 ALGIRFVGETSARLIARHFKNIDALMEA----------SLQDLTEVEGVGEVIAKSVIAY 558

Query: 616 YQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + NP N   V  L             +   S ++  K +V +G      R + +  + Q 
Sbjct: 559 FSNPINKEIVARLRNYGLQMALSEEQQAGSSDKLTGKSIVISGVFTHHSRDEYKALIEQN 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           G      +S KT  ++ GDN G SKLEKA++LGV I++E+ FL +++
Sbjct: 619 GGKNVGSISGKTSFVLAGDNMGPSKLEKAERLGVPIISEDDFLKMIE 665


>gi|317477010|ref|ZP_07936252.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906803|gb|EFV28515.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA]
          Length = 666

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/708 (32%), Positives = 362/708 (51%), Gaps = 51/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ +  L  ++  H+  YY  + P I D E+D + R    +    P+    +D N P  
Sbjct: 3   IKERIDQLRTDLHRHNYNYYVLNTPEISDKEFDDMMRELQDLEKEHPEY---QDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +VTH  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDLNKNFTQVTHKYPMLSLGNTYSENEVTDFYDRVKKALN----EDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL  N  PE  E+RGE+ +  
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNNYPEHFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L    E+   G 
Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ     GF ++   ++ ++   +  Y     + R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQTAAGWGFKISEHTKKTHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKS 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAITPVANLDPVQLSGTIVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + 
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITH 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDT 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I+  AD++ L          I+N+   G+ S  N+   I   + +  ER 
Sbjct: 458 FYR----LGLIKDTADLYQLTA------EDIKNLDRMGEKSAENIIKGIKASKEVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG  +A+ +AK +          NNI    N D   L  +  +G+ IAQ+I+
Sbjct: 508 LFALGIRFVGETVAKKIAKSF----------NNIEELENADLEKLTSIDEIGEKIAQSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVT 671
            ++ +P N+  +E L         + E       ++  + +V +G      R + ++ + 
Sbjct: 558 IYFSSPLNVNLIERLKSAGLQLYRKEEDLNEYTDKLAGQSIVISGVFTHHSRDEYKDLIE 617

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ G+N G SKLEKA +LG+KI++E++FL L+
Sbjct: 618 KNGGKNVGSISTKTSFILAGENMGPSKLEKAHKLGIKIISEDEFLTLI 665


>gi|255657267|ref|ZP_05402676.1| DNA ligase [Clostridium difficile QCD-23m63]
          Length = 674

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/706 (31%), Positives = 383/706 (54%), Gaps = 50/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N
Sbjct: 3   IKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPTN 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+      ++ H  P LSL   ++ +DLR F  R+  +       ++ + +E KIDG
Sbjct: 60  RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVG----ENVEYVVEFKIDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK+
Sbjct: 116 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 173

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           +F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    +   +   
Sbjct: 174 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEDYDLESHS 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++
Sbjct: 234 DSLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLEYEIDGMVIKVNNIKQRDEM 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHN
Sbjct: 294 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 353

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP
Sbjct: 354 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    +R          AA +C   ++C AQ    + HFVSRDA NI+GLG+  +    
Sbjct: 403 VCSEPTIRLEGE------AAVKCIN-MSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 455

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             +     I+  +D++ +++        +  +   G+ S  NL +SI K +   L R I 
Sbjct: 456 NEKI----IQDVSDLYYIKK------EDVVELERMGEKSADNLINSIEKSKENDLWRLIN 505

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI+ +G + A+ LA  +       ++++++++  ++       +   G I+A ++VEF
Sbjct: 506 GLGIKFIGVKAAKILAYNF-------KDLDDVMSATSEQLEE---LEEFGSIMANSVVEF 555

Query: 616 YQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++  +N+  +  L      + S+    + V    E  K+V TGTL  ++R+ A++ + + 
Sbjct: 556 FKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEKR 615

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 616 GGKATSSVSKSTTFVLAGEEAGSKLAKANDLGIKVIDEERFLELLK 661


>gi|296451892|ref|ZP_06893609.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08]
 gi|296879713|ref|ZP_06903688.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07]
 gi|296259274|gb|EFH06152.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08]
 gi|296429302|gb|EFH15174.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07]
          Length = 677

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/706 (31%), Positives = 383/706 (54%), Gaps = 50/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P N
Sbjct: 6   IKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPTN 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+      ++ H  P LSL   ++ +DLR F  R+  +       ++ + +E KIDG
Sbjct: 63  RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVG----ENVEYVVEFKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK+
Sbjct: 119 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           +F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    +   +   
Sbjct: 177 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEDYDLESHS 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + ++
Sbjct: 237 DSLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLEYEIDGMVIKVNNIKQRDEM 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLHN
Sbjct: 297 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  CP
Sbjct: 357 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    +R          AA +C   ++C AQ    + HFVSRDA NI+GLG+  +    
Sbjct: 406 VCSEPTIRLEGE------AAVKCIN-MSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             +     I+  +D++ +++        +  +   G+ S  NL +SI K +   L R I 
Sbjct: 459 NEKI----IQDVSDLYYIKK------EDVVELERMGEKSADNLINSIEKSKENDLWRLIN 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI+ +G + A+ LA  +       ++++++++  ++       +   G I+A ++VEF
Sbjct: 509 GLGIKFIGVKAAKILAYNF-------KDLDDVMSATSEQLEE---LEEFGSIMANSVVEF 558

Query: 616 YQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++  +N+  +  L      + S+    + V    E  K+V TGTL  ++R+ A++ + + 
Sbjct: 559 FKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEKR 618

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 619 GGKATSSVSKSTTFVLAGEEAGSKLAKANDLGIKVIDEERFLELLK 664


>gi|282917251|ref|ZP_06325006.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           D139]
 gi|283771054|ref|ZP_06343945.1| DNA ligase [Staphylococcus aureus subsp. aureus H19]
 gi|282318878|gb|EFB49233.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           D139]
 gi|283459648|gb|EFC06739.1| DNA ligase [Staphylococcus aureus subsp. aureus H19]
          Length = 667

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/715 (33%), Positives = 373/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELINIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +     +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKESLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIHD-----------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++E     I+  ADIF L         ++          V NL  +I + ++ SLE 
Sbjct: 453 QLYQNE----LIKDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +           +          + +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +  +   I   +     E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|189465636|ref|ZP_03014421.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM
           17393]
 gi|189437910|gb|EDV06895.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM
           17393]
          Length = 665

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/707 (32%), Positives = 366/707 (51%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++  L  E+  H+  YY  + P I D E+D + R    +    P+    +D   P  
Sbjct: 3   AKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQEMEREHPEY---QDETSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +VTH  P LSL   ++  ++  F  R  +              E K DG
Sbjct: 60  RVGSDLNKNFTQVTHKYPMLSLGNTYSEGEVSDFYDRTQKALN----EDFEICAELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK + A  RGDG  G+DV+  ++ I TIP VL  + P++ E+RGE+ +   
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPQLFEIRGEILMPWK 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L    E+   G Y
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQK    GF +++ +++ ++   +  Y +   + R  LP   DG+V KV+    QK L
Sbjct: 235 ENLQKAAQWGFKISDHMKKCHSLQEVFDYIHYWDTERKNLPVATDGIVLKVNSLKQQKNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434
            D I+GL           D+ VGD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 355 ADIIEGL-----------DLHVGDMVYVEKGGEIIPKITGVDKDARSMMVGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 404 PECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+   D++ L          I+N+   GD S  N+   I + R +  ER +
Sbjct: 458 YR----LGLIKDTTDLYKLT------VDDIKNLDRMGDKSAENIVKGIAQSREVPFERAL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK +   +             N D   LI +  +G+ IAQ+I+ 
Sbjct: 508 FALGIRFVGETVAKKIAKSFTDIEEL----------ENADLERLINIDEIGEKIAQSIIS 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ NP N   +E L         + E       ++  + +V +G      R + ++ + +
Sbjct: 558 YFANPLNRELIERLKIAGLQFSRKEEDLSGYTDKLVGQSIVISGVFTHHSRDEYKDLIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G +KLEKAQ+LGV+IM+E++FL L+
Sbjct: 618 NGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVQIMSEDEFLALI 664


>gi|309777086|ref|ZP_07672052.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915156|gb|EFP60930.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53]
          Length = 665

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/700 (33%), Positives = 365/700 (52%), Gaps = 47/700 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L + +      YY   +P + D EYD   +   A+   +P      DPN    +
Sbjct: 3   QQRILELRKILDRLAYEYYVLDQPSMSDQEYDRYYQELVALEEKYPQY---RDPNSITQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +  KV H    LSL   +N++DL  F         ++    + + +E KIDG 
Sbjct: 60  VGGVVLDAFTKVEHKRTMLSLGNAFNLDDLHAF-----DERVREVVPRVRYVVELKIDGL 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ Y  G+FV A  RGDG  GEDVS  ++ I +IP  + L     +EVRGEVY+    
Sbjct: 115 AMSLIYRDGRFVQALTRGDGVVGEDVSHNVKTIASIPMNIPLQ--GEVEVRGEVYMPNAS 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E    G + +ANPRNAA+G +R+L+ +    R L+ F +      E       E
Sbjct: 173 FDMLNAEREKNGEELFANPRNAAAGSIRQLDSSIAAKRKLDAFWYYFVNAQEYDIHSHEE 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+KM  +   VN   +  ++   + ++  E+   R+TLPY IDG+V KVD+   Q +LG
Sbjct: 233 ALEKMSEMHLRVNPLRKVCDSIAEVWAFIEEITKQRNTLPYAIDGMVIKVDDLDAQNRLG 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + PRW I++KF  ++  T+LLDI + +GRTG +TP A LEPV + G  ++ A LHNE
Sbjct: 293 STVKVPRWAIAYKFPAEEVVTKLLDIVVTVGRTGRITPNAVLEPVRVAGTTVSAAQLHNE 352

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK            +DIR+ D V+V++AG++IP+VV  +V  R+     + FP+ CPI
Sbjct: 353 DMIK-----------EKDIRIQDDVVVRKAGDIIPEVVRPLVERRNDTQAVYHFPTHCPI 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR          AAH C     C A+ +E + HF SRDA +I+ LG ++++FF K
Sbjct: 402 CGSELVRFPEE------AAHYCIN-QDCPARVVESMIHFASRDAMDIDTLGDKKIEFFHK 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +    DI+ L+  +Q    ++ ++ GF + SV  L D+I   +   LE  ++ 
Sbjct: 455 Q----GFLNTIEDIYCLKEHKQ----ELIDLEGFKEKSVAKLLDAIEDSKKNPLEDLVYG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG + A+ LAK +L+                     L+ +  +G I A++I  F+
Sbjct: 507 LGIRQVGKKAAKVLAKQFLTMDALMAA----------SVEELVAIKDIGQITAESITAFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             P+N+  +  L           E+   S+   K +V TGTL ++ R+ A+  +  LGA 
Sbjct: 557 HEPKNMELIAHLKGYGLRMDTEAEQIQESQFSGKTVVLTGTLTQMTRNDAKALLESLGAN 616

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           VS  +S+KTD++I G+  GSKL KA  LGV  M+E+ F+ 
Sbjct: 617 VSGSVSKKTDLVIYGEAAGSKLTKANSLGVMTMDEDTFMK 656


>gi|262203140|ref|YP_003274348.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247]
 gi|262086487|gb|ACY22455.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247]
          Length = 691

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/713 (31%), Positives = 357/713 (50%), Gaps = 42/713 (5%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
              R++ S+L  EI  H   YY    P+I D E+DAL RR   +  A P+LA    P+ P
Sbjct: 12  ADLREQWSTLADEIREHQFRYYVKDSPVITDGEFDALLRRLQDLEDAHPELAA---PDSP 68

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG  + +   V H    +SL+ +++ +++R ++ R+          S+ F  E KI
Sbjct: 69  TKLVGGGFSTAFTPVDHLERMMSLDNVFDYDEMRTWVERV----NADAGTSVEFLCELKI 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGE 190
           DG  + + YEKG  V    RGDG +GEDV+   R I  +P+ L+      IP+++EVRGE
Sbjct: 125 DGVALALVYEKGVLVRGVTRGDGRTGEDVTLNARTIDDVPQRLTASDEYPIPDVLEVRGE 184

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249
           V+    DF ALN  ++A G+ P+ANPRN+A+G LR+ NP    R  L    HG+G T   
Sbjct: 185 VFFRVEDFEALNASLVADGKAPFANPRNSAAGSLRQKNPQITARRRLRMICHGIGHTEGW 244

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                ++    +   G PV+    +      I+         R  + ++IDG+V K D+ 
Sbjct: 245 RPASLHDAYLALGAWGLPVSTHTTKVPGADEILEKIGYWGEHRHDVEHEIDGIVVKADDV 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S+Q++LG  +R+PRW I++K+  ++A+T LLDI + +GRTG +TP A L PV + G+ ++
Sbjct: 305 SVQRRLGATSRAPRWAIAYKYPPEEATTELLDIQVGVGRTGRVTPFAVLAPVLVAGSTVS 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNE  +K            + + +GD V +++AG+VIP+V+  +V+ R    + F 
Sbjct: 365 RATLHNESEVKR-----------KGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGTERAFV 413

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + +               RC     C AQ  ERL H   R +F+IE LG +
Sbjct: 414 MPDRCPECGAPL-----RPEKDSDVDIRCPNQETCPAQLRERLFHLAGRGSFDIEALGYE 468

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                  ++     I    D+F+L       T       G    +   L  ++   + + 
Sbjct: 469 AATALLNAK----VITNEGDLFSLTADDLARTDLFTTKAGALSANGKRLLANLENAKQVP 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R +  L IRHVG   AR+LA  + S            A  + D   L  V  +G  +A
Sbjct: 525 LWRVLVGLSIRHVGPTAARALATEFGSLN----------AIEDADVEQLAGVEGLGMTLA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q+I +++    +   VE             + ++   +E K +V TG+L+   R  A+E 
Sbjct: 575 QSIHDWFAVDWHREIVEKWRAAGVSMEDERDDSIVRTLEGKTIVVTGSLEDFSRDGAKEA 634

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + Q G   S  +S+KTD +++G++PGSK  KA+QLGV +++E+ F  LL+  +
Sbjct: 635 ILQRGGKASGSVSKKTDYVVIGESPGSKAAKAEQLGVPVLDEDAFKRLLETGD 687


>gi|210621776|ref|ZP_03292805.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275]
 gi|210154540|gb|EEA85546.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275]
          Length = 678

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/710 (32%), Positives = 379/710 (53%), Gaps = 51/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E  + ++ +L  +I+YH D YY    P I D EYD L +    +    P+  R    
Sbjct: 1   MGKEDIKLQIDNLIDKINYHSDKYYNQDTPEISDFEYDMLMKELIKLEAENPEFKRV--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P N++GG       +VTH  P LSL   ++ EDLR F  R+        D  + + +E
Sbjct: 58  DSPSNRVGGMALDKFDQVTHKNPMLSLSNAYSAEDLRDFDRRVRE----MTDGDVEYVVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + I YE G+F  AA RG+G  GED+S  +  I +IP  L ++    I VRGEV
Sbjct: 114 FKIDGLSVGITYENGEFKSAATRGNGIIGEDISKNVMTIKSIP--LKIDDKREIIVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI- 249
           YISK +F  +N+       + +ANPRN A+G LR+L+      R L+ FV  L   +E+ 
Sbjct: 172 YISKENFEKVNEYQEEHDLQIFANPRNLAAGSLRQLDSKLTAKRPLDIFVFNLENINELD 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 + L+ ++ LGF V+   +   +   ++ +       R +L +DIDG+V KV+  
Sbjct: 232 GIDTHSDSLEYLKKLGFSVSENYKICKSIDEVIEFIEYWTENRGSLKFDIDGMVVKVNNI 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             + ++G  A+SPRW I++KF  ++  +++LDI++++GRTG +TP A LEPV + G  ++
Sbjct: 292 EQRNEMGFTAKSPRWAIAYKFPAERKKSKILDIEVEVGRTGTITPTAILEPVRLAGTSVS 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNED+I+            +DI++ D V+V++AG++IP++V+++  +R  D + F 
Sbjct: 352 RATLHNEDFIR-----------EKDIKLFDHVIVQKAGDIIPQIVEVVKEDRTGDEKDFV 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            PS CP C    VR          AA +C   ++C AQ    + HFVSR+A +I+G+G+ 
Sbjct: 401 MPSVCPECGEPTVRLEGE------AAVKCIN-ISCPAQIRRGMIHFVSREAMDIDGMGES 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +  F K       I+  +DI+ L++ Q     ++      G+ S  NL  +I K ++  
Sbjct: 454 IITLFLKE----GLIKDVSDIYYLKKEQIVPLERM------GEKSADNLIKAIEKSKSND 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R I  LGIR VG + A+ LA  + S               N D   L ++   G I++
Sbjct: 504 LWRLINGLGIRFVGVKGAKILASNFSSLDEI----------INADVERLQQLEEFGSIMS 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +++V+F++  +N+  ++ L      +    +  + +    E  K+V TGTL  ++R++A+
Sbjct: 554 ESVVKFFREEQNLAVIQKLKDAGVNTEAGEDKSEGIPQLFEGMKIVLTGTLPTLKRNQAK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           E +   G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++E+ FL L
Sbjct: 614 EIIELRGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEDMFLKL 663


>gi|218131107|ref|ZP_03459911.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697]
 gi|217986811|gb|EEC53144.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697]
          Length = 666

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/708 (32%), Positives = 362/708 (51%), Gaps = 51/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ +  L  ++  H+  YY  + P I D E+D + R    +    P+    +D N P  
Sbjct: 3   IKERIDQLRTDLHRHNYNYYVLNTPEISDKEFDDMMRELQDLEKEHPEY---QDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +VTH  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDLNKNFTQVTHKYPMLSLGNTYSENEVTDFYDRVKKALN----EDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL  N  PE  E+RGE+ +  
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNNYPEHFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L    E+   G 
Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ     GF ++   ++ ++   +  Y     + R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQTAAGWGFKISEHTKKTHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKS 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAITPVANLDPVQLSGTIVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + 
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITH 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDT 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I+  AD++ L          I+N+   G+ S  N+   I   + +  ER 
Sbjct: 458 FYR----LGLIKDTADLYQLTA------EDIKNLDRMGEKSAENIIKGIKASKEVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG  +A+ +AK +          NNI    N D   L  +  +G+ IAQ+I+
Sbjct: 508 LFALGIRFVGETVAKKIAKSF----------NNIEELENADLEKLTSIDEIGEKIAQSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVT 671
            ++ +P N+  +E L         + E       ++  + +V +G      R + ++ + 
Sbjct: 558 IYFSSPLNVSLIERLKSAGLQLYRKEEDLNEYTDKLAGQSIVISGVFTHHSRDEYKDLIE 617

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ G+N G SKLEKA +LG+KI++E++FL L+
Sbjct: 618 KNGGKNVGSISTKTSFILAGENMGPSKLEKAHKLGIKIISEDEFLTLI 665


>gi|88809499|ref|ZP_01125007.1| DNA ligase [Synechococcus sp. WH 7805]
 gi|88786718|gb|EAR17877.1| DNA ligase [Synechococcus sp. WH 7805]
          Length = 692

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/728 (29%), Positives = 362/728 (49%), Gaps = 56/728 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++  + L Q ++     YY    P + D+ YD L R    +  A P+L  +   + P  +
Sbjct: 2   QERAAELRQLLNRAAHAYYVLDAPDLEDAVYDRLYRELLDLESAHPELVEA---DSPTQR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-----IFFTLEP 132
           +GG        VTH +P  SL+  ++ ++LR + TR+ +   ++  +      +    E 
Sbjct: 59  VGGSPAEGFRSVTHRVPLFSLDNAFSADELRGWYTRLIKVLDREPPSDSPLPALAMVGEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191
           KIDG  + + YE G  V AA RGDG  GE+++A +R I +IP  L L+  P  +EVRGE 
Sbjct: 119 KIDGNALALSYENGVLVRAATRGDGDQGEEITANVRTIASIPLRLHLDHPPAWVEVRGEA 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            I  + F A+N E  A     +ANPRNA +G LR+L+P  +  R L+FF + L    E  
Sbjct: 179 LIPDSTFAAINGERAARDEPLFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPEEWS 238

Query: 251 ---AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q+E L+ +   GF VN           +  ++++  S R  L Y  DG+V K++
Sbjct: 239 GQRPASQWESLRWLEDAGFRVNPNAALLPNLEAVEQFFSDWDSRRHDLNYATDGVVVKLN 298

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ   G   ++PRW I+ K+  ++A +RLL +  Q+GRTG++TPVA  EPV++ G  
Sbjct: 299 DLRLQDAAGFTQKAPRWAIALKYPAEEAPSRLLKLTCQVGRTGVVTPVAEFEPVSLAGTS 358

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN D ++ L           D+  GD ++V++AGE+IP+V+ ++   R   A P
Sbjct: 359 VSRATLHNADRLQEL-----------DLHSGDTIIVRKAGEIIPEVLRVLPELRLEGALP 407

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C S +VR+         AA RC    +C A     L+H+VS+ A +++GLG
Sbjct: 408 LELPHHCPSCGSDLVRESGE------AATRCVNS-SCPAILSGALRHWVSKGALDVDGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++   +       +R  AD++ L     TS  ++      G+ S +NL  ++ + R+
Sbjct: 461 SKLIEQLVER----GLVRSIADLYRLDTALLTSLERM------GEKSASNLVAALEQSRS 510

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R ++ LGI HVG   A++LA  +    + A               ++  +  +G  
Sbjct: 511 QPWSRQLYGLGIHHVGEVNAKALASAFPDADSLADA-------AVLQPEAITGLHGIGPE 563

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--------SSEIENKKLVFTGTLQ 659
           IAQ++ +++    N   ++ L           ++          S ++  +  V TGTL 
Sbjct: 564 IAQSLQQWFSTSANQDLLQQLRDVGLTLAASDQERQTLADRSNGSGQLSGQTFVLTGTLP 623

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + R +AQ  +   G  VS  +S+KT  ++ GD  GSKLEKA+ LGV +++E   + L+Q
Sbjct: 624 SLSRSQAQALIEAAGGKVSGSVSKKTSFVVAGDEAGSKLEKAKSLGVSVLDEAALMLLIQ 683

Query: 720 QYNTTLRI 727
               ++  
Sbjct: 684 DSADSIHP 691


>gi|304384418|ref|ZP_07366824.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973]
 gi|304334516|gb|EFM00803.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973]
          Length = 680

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/707 (31%), Positives = 358/707 (50%), Gaps = 50/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L +++  H+  YY  + P I D E+D +      +    P+    +DPN P  +
Sbjct: 19  KARIEQLRRDLHAHNYKYYVLNAPTIGDQEFDEMMHELQRLETLHPEW---DDPNSPTQR 75

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G +++    +V H  P LSL   +N +D+ ++   + +      D       E K DG 
Sbjct: 76  VGSDLSTGFAQVKHRYPMLSLSNTYNEQDVAEWYESVRKGLN---DEDFEVCCEMKYDGL 132

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            I++ Y  G+ V    RGDG  G+DV+A +R I  IP VL     P   E+RGE+ +   
Sbjct: 133 SISLTYVDGRIVQGVTRGDGVQGDDVTANVRTIHAIPLVLPGTGYPHEFEIRGEILMPWA 192

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E  A     +ANPRNAASG L+ L+P  +  R L+ +++ L     + A G Y
Sbjct: 193 VFEQLNKEREAAEEPLFANPRNAASGTLKSLDPALVATRRLDAYLYYL-LGETLPADGHY 251

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L      GF ++ G+++  T   I ++     S R  LP   DG+V KV+    Q+ L
Sbjct: 252 ENLMAAASWGFKISAGMKKVRTLEEIYAFIRYWDSERKNLPVATDGIVLKVNSLRQQRAL 311

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL ++  Q+GRTG +TPVA +EPV + G  +  ATL+N
Sbjct: 312 GFTAKSPRWAIAYKFKAERACTRLNEVTYQVGRTGAVTPVANMEPVQLAGTTVKRATLNN 371

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED+I+             D+ +GD V V++ GE+IPK+V +    R  DA P  F + CP
Sbjct: 372 EDFIRSF-----------DLHLGDYVYVEKGGEIIPKIVGVDTTRRLADALPVHFITVCP 420

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR          AAH C   ++C  Q   R++HF++R A NIE LG + +D ++
Sbjct: 421 ECGTSLVRYEGE------AAHYCPNDVSCPPQVKGRIEHFIARKAMNIESLGPETVDEYY 474

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       IR  AD++ ++       T+  N  G  + S   +   I + +N+  ER +F
Sbjct: 475 RR----GLIRNIADLYEIR-------TEQINGDGSREKSAQRVVAGIAQSKNVPFERVVF 523

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   AR LA+ + +     +   + +          +++  VG  IA ++V +
Sbjct: 524 ALGIRFVGETSARLLARRFKNIDALMEASPDEL----------MQIEGVGMSIANSVVGY 573

Query: 616 YQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++NP N   VE L                ++  +  K +V +G      R + +  + Q 
Sbjct: 574 FRNPVNREIVERLRGYGLQMALSADEMTGMTDRLAGKTVVISGVFSHHSREEYKRMIEQN 633

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   +  +S KT  I+ GD+ G SKLEKA++LGV +++EE FL +++
Sbjct: 634 GGKNTGSISSKTSFILAGDHMGPSKLEKAEKLGVPVIDEETFLSMIE 680


>gi|260436246|ref|ZP_05790216.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109]
 gi|260414120|gb|EEX07416.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109]
          Length = 680

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/717 (30%), Positives = 355/717 (49%), Gaps = 49/717 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    +  + L   ++     YY    P++ D+ YD L R    +    P L R   P+ 
Sbjct: 1   MADPHERAAELRHLLNRAGHAYYVLDAPVMEDAVYDRLYRELLELEQNDPGLQR---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+       V H +  LSL+  +N +DLR +  R+ +   + +D  +    E K
Sbjct: 58  PTQRVGGDPAEGFTNVEHRVGMLSLDNAFNRDDLRAWHERLLKVLDRPNDTRLPLVGELK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           IDG  + + Y  G    AA RGDG  GE+++A +R I +IP  L + N PE +EVRGE +
Sbjct: 118 IDGNALALSYRNGVLERAATRGDGSRGEEITANVRTISSIPLRLQIENPPEWVEVRGEAF 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           I    F A+N E    G   +ANPRNA +G LR+L+P  +  R L+FF + L    +   
Sbjct: 178 IPDATFAAINAEREQRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPGDAQP 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            GQ+  L+ +   GF VN           I  + +  +  R  LPY  DG+V K+D   L
Sbjct: 238 PGQWAALEWLNTAGFRVNPNRELCGELAAIQRFCDHWEQGRHDLPYATDGVVVKLDNLQL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q + G   ++PRW I+ K+  ++A TRLL I  Q+GRTG +TPVA  E V + G  ++ A
Sbjct: 298 QDEAGFTQKAPRWAIALKYPAEEAPTRLLRIGAQVGRTGAITPVAEFEAVALAGTSVSRA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           D+ +GD ++V++AGE+IP+VV ++   R  DA P   P
Sbjct: 358 TLHNADRIAEL-----------DLHLGDTIVVRKAGEIIPEVVRVLPELRPSDATPVQLP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S +VR+ +       AA RC    +C A     L+H+VS+ A +++GLG + +
Sbjct: 407 QQCPECGSNLVREGDE------AATRCVNS-SCPAILRGGLRHWVSKSALDVDGLGSKLI 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +       +   AD++ L      S  ++      GD S TNL +++   +     
Sbjct: 460 EQLVER----GLVGSLADLYRLDAALLASLDRM------GDKSATNLVEALEASKQQPWH 509

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRH+G   A++LA  + S       I+++ A   +    +  +  +G  I+ +
Sbjct: 510 RQLYGLGIRHIGEVNAKALAAAFFS-------IDSLAAAALEAPEQIAELHGIGPEISAS 562

Query: 612 IVEFYQNPRNICAVE---------ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           + ++ + P N   ++                 +  +   +    ++ K LV TGTL  + 
Sbjct: 563 LGQWLRTPANQQLLQDLRSVELSLEASASEQEAASQAGADADGVLQGKTLVLTGTLPNLS 622

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+  +      VS  +S+KTD ++ G+  GSKL KA+ LGV +++E     LLQ
Sbjct: 623 RSEAKALIEAADGKVSGSVSKKTDYLVAGEAAGSKLTKAESLGVTVLSEADLTALLQ 679


>gi|283458551|ref|YP_003363181.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18]
 gi|283134596|dbj|BAI65361.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18]
          Length = 747

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/739 (32%), Positives = 375/739 (50%), Gaps = 57/739 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R E + L  +I      YY    P + D+EYDAL RR + I    P L  +   + P
Sbjct: 33  EALRAEYAELTDKIRAARRAYYNEDAPFLSDAEYDALYRRLEIIEAEHPHLIAN---DSP 89

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE   +   VTH     SLE +++ E+LR ++T+     +    ++  +  E KI
Sbjct: 90  TQEVGGEAIEAFAPVTHLQRMYSLEDVFSFEELRAWLTKTEESARNLTGSAPQWLTELKI 149

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  + + Y  G  V AA RGDG +GEDV+  +R I +IP+ L   N PE IE+RGEV+I
Sbjct: 150 DGLAVNLLYRNGTLVRAATRGDGTTGEDVTHNVRTIASIPQQLTGENHPEEIEIRGEVFI 209

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           S  DF  LN+ MIA G+ P+ANPRNAA+G LR+ +     +R L+ +VHG+G  + +   
Sbjct: 210 SSADFEKLNESMIAAGKNPFANPRNAAAGSLRQKDAAVTASRPLSMYVHGIGSRTGLDIA 269

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            QYE    +   G PV+     A+    +  + N+    R +L ++IDG+V KV++F+ Q
Sbjct: 270 TQYETYDLLASWGLPVSPYSEIADNTEAVFDFINKYGEQRHSLVHEIDGIVIKVNDFATQ 329

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            QLG  +R PRW +++K+  ++  T+LLDI + +GRTG +TP   +EPV + G+ +  AT
Sbjct: 330 AQLGYTSRVPRWAVAYKYPPEEVHTKLLDIRVDVGRTGRVTPYGVMEPVFVSGSTVERAT 389

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D +K            + + +GD V++++AG+VIP++V  +V  R    + F  PS
Sbjct: 390 LHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEIVAPVVALRDGTEREFVMPS 438

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +         +     RCT   +C AQ  ER+ +  SR AF+IE LG +   
Sbjct: 439 ECPSCGSPL-----APGKEGDVDLRCTNPRSCPAQLTERVYYAASRGAFDIEALGFEAAK 493

Query: 493 FFFKSEDP-AFSIRIPADIFTL-------------QRRQQTSTTKIENILGFG------- 531
                  P    +   A +F+L             ++ +   T K+E +  F        
Sbjct: 494 ALTSPATPDTPPLTTEAHLFSLNIEDLREVTIEREKKVKGVGTGKMERVPYFYTKPTKAR 553

Query: 532 -----DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                  +  NL+  + K +   L R + +L IRHVG   AR+LA  + S Q   +    
Sbjct: 554 PEPKPTKNTLNLFAELEKAKQQPLWRVLVALSIRHVGPTAARALAAEFGSMQAIREADRE 613

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
            +A           V  VG  IA +I+E++    +   V++            +++V   
Sbjct: 614 RLAA----------VDGVGTTIADSIIEWFAEDWHAEVVDSWAAAGVRMEDSRDESVERT 663

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E   +V TGTL    R  A+E +   G   S  +S+KT  ++ G N GSKL+KAQQLG+
Sbjct: 664 LEGLTVVVTGTLNGYTRDGAKEAIISRGGKASGSVSKKTHFVVAGANAGSKLDKAQQLGL 723

Query: 707 KIMNEEQFLFLLQQYNTTL 725
           KI++EE F  LL+     +
Sbjct: 724 KILDEEGFTALLEGGPEAV 742


>gi|319902123|ref|YP_004161851.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108]
 gi|319417154|gb|ADV44265.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108]
          Length = 665

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/707 (31%), Positives = 367/707 (51%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++  L  ++  H+  YY  + P I D E+D++ R    +   +P+    +D + P  
Sbjct: 3   AKEKIDQLRADLHRHNYNYYVLNAPEISDKEFDSMMRDLQNLEKEYPEY---QDNSSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K DG
Sbjct: 60  RVGSDLNKNFTQVMHKYPMLSLGNTYSENEVTDFYDRVKQSLN----EDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP +L  N P++ E+RGE+ +   
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLLLHGNYPKLFEIRGEILMPWK 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F ALN+E  A     +ANPRNAASG L+  N   +  R L+ +++ L    E+   G Y
Sbjct: 176 SFEALNNEREAREETLFANPRNAASGTLKLQNSAVVASRKLDAYLYYL-LGEELPCNGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ     GF ++  +++ ++   I  Y +   + R  L    DG+V KV+    QK L
Sbjct: 235 ENLQMAASWGFKISEHMKKVHSLEEIFEYISFWDTERKNLSVATDGIVLKVNSLKQQKNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGTITPVANLDPVQLSGTVVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD V V++ GE+IPK+  +    R     +   F + C
Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVNKEARGMLLGEKVKFITHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C SR++R          AAH C    AC  Q   +++HF+ R A +I+GLG + +D F
Sbjct: 404 PECGSRLIRYEGE------AAHYCPNETACPPQIKGKIEHFICRKAMDIDGLGPETVDTF 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++ L+        ++      G+ S  N+ + I   + +  ER +
Sbjct: 458 YR----LGLIKDAADLYNLKADDIKGLDRM------GEKSAENIINGITASKEVPFERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK ++  +  A     ++          I +  +G+ IA++IV 
Sbjct: 508 FALGIRFVGETVAKRIAKSFIDIEELANANLEVL----------INIDEIGEKIAKSIVT 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ NP N   VE L         + E        +  + +V +G      R + +  + +
Sbjct: 558 YFCNPSNRKLVERLKDAGLQLFQKEEDLNEYTDRLAGQSIVISGVFTHHSRDEYKILIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G   +  +S KT+ I+ G+N G +KLEKA++LG+KIMNE++FL L+
Sbjct: 618 NGGKNTGSISAKTNFILAGENMGPAKLEKARKLGIKIMNEDEFLALI 664


>gi|257791950|ref|YP_003182556.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243]
 gi|325829905|ref|ZP_08163363.1| DNA ligase (NAD+) [Eggerthella sp. HGA1]
 gi|257475847|gb|ACV56167.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243]
 gi|325488072|gb|EGC90509.1| DNA ligase (NAD+) [Eggerthella sp. HGA1]
          Length = 708

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/745 (31%), Positives = 375/745 (50%), Gaps = 61/745 (8%)

Query: 1   MKKRQLIPIEALSIEQA----RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCD 56
           M   Q   ++  ++ +A       + +L +EI +H   YY    P I D+ +D+L R   
Sbjct: 1   MADEQQTLLDEQALAEATNDPAARIDALRREIEHHSYLYYANDAPEISDAAFDSLMRELR 60

Query: 57  AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR 116
            +  A P+L    DP+ P  ++GG +      V H+    SL+   ++++L  +I R+  
Sbjct: 61  ELEAAHPELI---DPSSPTQRVGGYVGEQFAPVRHARRMYSLDNAMDLDELDAWIERVTE 117

Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
            + +     +    E KIDG+ I + YE G+ + AA RGDG +GEDV+A +R +  +P  
Sbjct: 118 AFGRM----VPVVCELKIDGSSIALTYEDGRLMRAATRGDGTTGEDVTANMRTVKDVPLR 173

Query: 177 LSL-------NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229
           L         +    +E+RGEVY+ K+ F ALN   +  G++ +ANPRNAA+G LR+ +P
Sbjct: 174 LRQGALGGLRDADAPVELRGEVYMPKSSFDALNVAAVENGKQAFANPRNAAAGSLRQKDP 233

Query: 230 TDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288
           +    R L+ F++ +     + A+GQ+E+L  +R  GF VN  V    T   + ++    
Sbjct: 234 SITANRDLSTFIYAVADERALNAEGQWELLAWLREAGFHVNPDVELCQTREEVHAFCERA 293

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
            + R  LPY+IDG+V KV+ F+ Q+ +G  AR+PRW ++ KF  ++ +T L DI +Q+GR
Sbjct: 294 VARREDLPYEIDGVVVKVNSFAQQESMGYTARAPRWAVAFKFPPEEKTTLLRDITVQVGR 353

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG LTPVA L+PV + G+ +  ATLHNED ++            +D+RVGD V+V++AG+
Sbjct: 354 TGKLTPVAELDPVVVAGSTVARATLHNEDEVQR-----------KDVRVGDTVIVRKAGD 402

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+V+  ++  R  DA  +  P  CP C S V+R+            RC   + C AQ 
Sbjct: 403 VIPEVLGPVLALRPADAVQWEMPRTCPSCGSPVIREEGE------VDFRCI-SIDCPAQA 455

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-----K 523
           LERL H+ SR A +I+G+G++ +    +S      +   AD +TL   + +        K
Sbjct: 456 LERLLHWASRGAMDIDGMGEEIVSRLVESGR----LSDVADYYTLDEVELSLLDMGRVNK 511

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
               +  G      L  +I++ R     R +F LGIRHVG  IA  LA  Y S +   + 
Sbjct: 512 DGEPIRLGSTVAKKLVAAIDESRTRPFARALFGLGIRHVGKTIAELLAAAYPSIEALMEA 571

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--- 640
               +A           +  VG  IA++   F + P N   +E L               
Sbjct: 572 SEEDLAV----------IDGVGPKIARSAYLFLRTPDNAAVIERLRSHGVALADEAADAG 621

Query: 641 KNVSSEIENKKLVFTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
           + +   +     V TG+L    + R +A   +   GA VS  +S+KT  ++ G+  GSK 
Sbjct: 622 EQLPQTLAGLTFVLTGSLVESGMTRDEAGAVLKARGAKVSGSVSKKTSFVVAGEAAGSKY 681

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNT 723
           +KA  L V +++E   L +L+    
Sbjct: 682 DKAVALSVPVLDEAALLRILETGEA 706


>gi|237717569|ref|ZP_04548050.1| DNA ligase [Bacteroides sp. 2_2_4]
 gi|293371586|ref|ZP_06618001.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f]
 gi|229453155|gb|EEO58946.1| DNA ligase [Bacteroides sp. 2_2_4]
 gi|292633449|gb|EFF52017.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f]
          Length = 666

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/710 (32%), Positives = 365/710 (51%), Gaps = 53/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKALN----EDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  LN E  A     +ANPRNAASG L+  N + +  R L+ +++ L     +   G
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDG 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK
Sbjct: 234 HYENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQK 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+L
Sbjct: 294 NLGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432
           HN D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F  
Sbjct: 354 HNADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIV 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D
Sbjct: 403 NCPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVD 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F++       I+  AD++ L         ++      G+ S  N+   I + + +  ER
Sbjct: 457 MFYR----LGLIKNTADLYKLTADDIKGLDRM------GEKSAENIITGIAQSKTVPFER 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I
Sbjct: 507 VIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEY 669
           + ++ N  N   V A LKE    + R E+++S    ++  + +V +G      R + +E 
Sbjct: 557 LAYFANESNRELV-AKLKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEYKEL 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 616 IEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|160884627|ref|ZP_02065630.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483]
 gi|156110366|gb|EDO12111.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483]
          Length = 666

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/710 (32%), Positives = 366/710 (51%), Gaps = 53/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKALN----EDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P+  E+RGE+ + 
Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPDSFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  LN E  A     +ANPRNAASG L+  N + +  R L+ +++ L     +   G
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDG 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK
Sbjct: 234 HYENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQK 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+L
Sbjct: 294 NLGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432
           HN D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F  
Sbjct: 354 HNADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIV 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D
Sbjct: 403 NCPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVD 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F++       I+  AD++ L         ++      G+ S  NL   I + + +  ER
Sbjct: 457 MFYR----LGLIKNTADLYKLTADDIKGLDRM------GEKSAENLITGIAQSKTVPFER 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I
Sbjct: 507 VIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEY 669
           + ++ N  N   V A LKE    + R E+++S    ++  + +V +G      R + +E 
Sbjct: 557 LAYFANESNRELV-AKLKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEYKEL 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 616 IEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|56962859|ref|YP_174586.1| NAD-dependent DNA ligase LigA [Bacillus clausii KSM-K16]
 gi|81366743|sp|Q5WJ30|DNLJ_BACSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56909098|dbj|BAD63625.1| DNA ligase [Bacillus clausii KSM-K16]
          Length = 671

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/696 (33%), Positives = 362/696 (52%), Gaps = 53/696 (7%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           +   YY    P + DSEYD L      +   +PDL      + P  +IGG    S  KV 
Sbjct: 20  YGYHYYVLDTPKVPDSEYDRLMNELLQLEADYPDLVTE---DSPSVRIGGPPAPSFKKVA 76

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H +P +SL   +N EDLR F  R+ +   +     + +  E K DG  +++ YE GK V 
Sbjct: 77  HRVPMMSLSNAFNEEDLRAFDRRVRQAVGEH----VSYVCELKFDGLAVSLTYENGKLVR 132

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
            A RGDG  GED++  +R +P IP  L L  P  IEVRGE Y+ K  F  LN+     G 
Sbjct: 133 GATRGDGTIGEDITNNLRTVPAIP--LRLKQPYSIEVRGEAYMPKASFERLNEAKEQAGE 190

Query: 211 KPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
           + +ANPRNAA+G LR+L+P     R L+ F + +G+      +  ++ L  ++ LGF VN
Sbjct: 191 EKFANPRNAAAGSLRQLDPKIAAKRNLSLFAYSIGEVEGKNVQTHFDSLMFLKELGFKVN 250

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
               +  T   +++Y  +    R  LPY+IDG+V KV+  +  ++LG  A+SPRW  + K
Sbjct: 251 EEAAECETIEDVIAYTEKWSERRHELPYEIDGVVVKVNSLADHEKLGFTAKSPRWATAFK 310

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           F  ++  T L DI++ +GRTG++TP A L+PV + G  +  A+LHNED I+         
Sbjct: 311 FPAEEVLTVLRDIELNVGRTGVVTPTALLDPVLVAGTTVRRASLHNEDLIR--------- 361

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
              +D+++GD V+VK+AG++IP+VV ++ ++R  +   F  P+ CP C S + R      
Sbjct: 362 --EKDVKLGDTVIVKKAGDIIPEVVGVLTDKRTGEEVDFHMPTECPECHSVLERLEGE-- 417

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
                A RC     C AQ  E L HFVSR+A NI+GLG++ +   F  +     I   AD
Sbjct: 418 ----VALRCLNP-KCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFLHQ----LIADVAD 468

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
                        ++  +   G+ SV NL  +I   +  SLER +F LGIR VGA+ A++
Sbjct: 469 ------LYLLEREELLQLERMGEKSVDNLLAAIEASKENSLERLLFGLGIRFVGAKAAKT 522

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           LA  + + +   +            +  L+ V  +G+ +A +IV ++Q P     +E L 
Sbjct: 523 LAYEFETMERLQEAT----------FEQLLAVNEIGEKMADSIVSYFQKPEVATLLEKLA 572

Query: 630 KEVSPSIGRHEKNV-----SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
                      K       +     K +V TG L +  R +AQE +  LG  V+  +S+K
Sbjct: 573 NAGVNMTYTGPKKAAIAEEAGVFAGKTVVLTGKLSQWTRKEAQEKIEALGGTVTGSVSKK 632

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           TD+++ G++ GSK +KA+ +G++I  EEQF   ++Q
Sbjct: 633 TDLVVAGEDAGSKQKKAESIGIEIWTEEQFTQAVEQ 668


>gi|330685564|gb|EGG97210.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU121]
          Length = 668

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/706 (34%), Positives = 376/706 (53%), Gaps = 53/706 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + Q +  +  L   ++ +   YY    P + DSEYD L      I    P+    + P+ 
Sbjct: 1   MSQLQNRVDELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIHIEEEHPEF---KTPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI     K     + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENIGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A 
Sbjct: 171 PRKSFMNLNEEKEKNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSINDFTDFEAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   L ++  LGF  N+   + +   G++ Y  +  + R TLPYDIDG+V KV++   Q
Sbjct: 231 TQSGALDELDQLGFKTNHERERVSDIDGVLKYIEKWTAERETLPYDIDGIVIKVNDLEQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIDRRPEDAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++ +        V NL ++I + ++ SLE 
Sbjct: 453 QLYEND----LIKDVADIFYLEEEDLLPLERMGS------KKVENLLEAIKQAKSQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + +R LA+ Y +           +          I +  +G  +AQ++
Sbjct: 503 LLFGLGIRHLGVKASRVLAEKYETMDRLLTVTEEEL----------IAIHDIGGKLAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +      +   E     +   K +V TG L+++ R++A +
Sbjct: 553 VTYLENDDIRALIQKLKDKDVNMTYKGVKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASQ 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  EE+F
Sbjct: 613 WLQMQGAKVTNSVTKSTDILIAGADAGSKLTKAEKFGTEIWTEEEF 658


>gi|325681379|ref|ZP_08160905.1| DNA ligase (NAD+) [Ruminococcus albus 8]
 gi|324106869|gb|EGC01159.1| DNA ligase (NAD+) [Ruminococcus albus 8]
          Length = 665

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/712 (30%), Positives = 371/712 (52%), Gaps = 52/712 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE    + A+K +  L   ++YH   YY   +  I D +YD ++     +   +P+  R 
Sbjct: 5   IEMADKDNAKKRIDELVATLNYHAHLYYVEDRNEISDYDYDMMQNELKKLEAQYPEFIR- 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  ++GG+      KV H +   SL+ +++ E +R+F+ R+         +   F
Sbjct: 64  --PDSPTQRVGGKAVSRFEKVQHKVQMGSLQDVFSFEGVREFVDRVRET-----VDDPKF 116

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +EPKIDG  +++ Y  G+    + RGDG  GE+V+  +R + +IP  +   +P ++EVR
Sbjct: 117 VVEPKIDGLSVSLEYHDGQLTVGSTRGDGFVGENVTENLRTVRSIPVSIDSTLP-MLEVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEVY+ ++ FL L  E      +P+ NPRNAA+G LR+ NP     R L+ FV  + +  
Sbjct: 176 GEVYMPRSVFLKLVKEQEDNDEQPFKNPRNAAAGSLRQKNPKIAAKRKLDIFVFNVQQVE 235

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   + L  ++ LGF      R  +T   I++   E+   R  LPYDIDG+V KVD
Sbjct: 236 GKELTAHKQSLDYLKELGFKTVPDYRLVSTADEIIARIGEIGESRFELPYDIDGVVIKVD 295

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +FS ++++G  A+ P+W +++KF  ++ +T+LLDI++ +GRTG +TPVA  EPV + G  
Sbjct: 296 DFSQRERIGSTAKDPKWAVAYKFPPEEKNTKLLDIELNVGRTGAVTPVAIFEPVFLAGTQ 355

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN+D I             ++I +GD + V++AG++IP+V+ ++  +    A  
Sbjct: 356 VSRATLHNQDLIN-----------EKNINIGDIIKVRKAGDIIPEVLGVV-EKNSDGA-- 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F+ P  CP+C+++++R          AA RC   + C AQ    + HF S+ A NI+GLG
Sbjct: 402 FTLPDECPVCKTKLIRSEEE------AAVRCPN-VECPAQIFRSIVHFASKGAMNIDGLG 454

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            Q +            I   AD++ +         K+  +  F + S  NL  +I K ++
Sbjct: 455 PQIVRVLLDK----GLITSVADLYHITE------EKLLELDNFKEKSAHNLVTAIEKSKS 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL+R IF LGIR +G   A+ L   +    +  +     IA           +   GDI
Sbjct: 505 NSLDRLIFGLGIRGIGQASAKLLCAKFGGIDSIMRATAAEIA----------EIEGFGDI 554

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A ++   +     +  ++ L      +    +       E K  V TGTL  ++R++A+
Sbjct: 555 MADSVYSAFHEEHMLSLIQRLKDC-GVNTDYEKVQQDDRFEGKTFVLTGTLPTLKRNEAK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E + + G   S  +S+KTD ++ G+  GSKL KA+QLG+KI+ EE+F+ +++
Sbjct: 614 ELIEKFGGKASGSVSKKTDYVLAGEEAGSKLTKAEQLGIKIITEEEFMEMIK 665


>gi|313159317|gb|EFR58681.1| DNA ligase (NAD+) [Alistipes sp. HGB5]
          Length = 694

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/705 (31%), Positives = 364/705 (51%), Gaps = 49/705 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R+ +  L +++ YH+  YY  + P I D E+DA+ R    +  A P++A   DPN P  
Sbjct: 2   IRERIEELRRQLEYHNFRYYVENAPEISDFEFDAMMRELQDLERAHPEMA---DPNSPSV 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++      V H  P LSL   ++ ++L +FI RI +     +     F  E K DG
Sbjct: 59  RVGSDITAEFRSVKHRFPMLSLGNTYSPDELHEFIERIEK-----ETGPTEFVCELKFDG 113

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
           T I++ YE G+ + A  RGDG  G+DV+A +R + T+P  L   + P+  E+RGE+ +  
Sbjct: 114 TAISLTYEHGRLLRAVTRGDGTQGDDVTANVRTVRTVPLRLRGDDWPDYFEIRGEILMPY 173

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
             F  +N E  A G   +ANPRNAA+G L++     + R  L+  ++ L    ++     
Sbjct: 174 ASFDKINAEREAAGETLFANPRNAAAGTLKQQASAVVARRGLDCTLYQLA-GDDLPFTNH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQK R  GF +++ +R   +   I +Y       R  LP+  DG+V KV++F +++Q
Sbjct: 233 WESLQKAREWGFKISDQMRICRSAEEIDAYIAHWDEARRELPFPTDGVVIKVNDFGVRRQ 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A++P+W +++KF  +QA TRL  +  Q+GRTG +TPVA LEPV + G  +  ATLH
Sbjct: 293 LGFTAKAPKWAVAYKFKAEQALTRLDSVAFQVGRTGAITPVANLEPVLLAGTTVRRATLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N + +  L           DIR GD V V++ GE+IPK+  + +++R  D++PF + + C
Sbjct: 353 NAEQMALL-----------DIRPGDMVYVEKGGEIIPKITGVELSQRPADSRPFEYITVC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +V+          A H C     C  Q + R+ HF+ R A +IEGLG++ ++  
Sbjct: 402 PECGTPLVKYEGE------AKHYCPNQGGCRPQIIGRIIHFIRRKAMDIEGLGEETVELL 455

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           +++      +R  AD++ LQ  Q             G+ S  N+  SI     +   R +
Sbjct: 456 YEN----GLVRDVADLYDLQAPQLACL------PRLGEKSADNIIRSIRGSVEVPFRRVL 505

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIR VG   A+ LA+++ S     +     +   ++          VG  IA AI+E
Sbjct: 506 FGLGIRFVGETTAKYLAEHFRSLDAVMKATREELTEADE----------VGGRIADAIIE 555

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++ + +N+  +  L            +  S  +  K  V +G      R + +E +   G
Sbjct: 556 YFADEKNLAIIRRLRDAGVKFEAEARELASESLAGKSFVISGKFSNHSRDELKELIEIHG 615

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
               A +S   D I+ G+N G +KL+KA++LGVKI++EE F+ ++
Sbjct: 616 GRNLAAVSANVDYIVAGENMGPAKLKKAEKLGVKIISEEDFIAMI 660


>gi|300779557|ref|ZP_07089415.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910]
 gi|300505067|gb|EFK36207.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910]
          Length = 667

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/710 (30%), Positives = 364/710 (51%), Gaps = 49/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  ++++  L +E+  H++ YYQ   P I D E+D L +    +   +P+     D N P
Sbjct: 3   ENIQQKIEQLRKELHQHNENYYQLDTPTITDFEFDMLLQELQDLEARYPEF---YDENSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +      + H     SL+  ++ +DL  +  RI +      D+ + F  E K 
Sbjct: 60  TVRVGGGVTKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRIIKTI----DDPVEFVAELKY 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I+I YE GK   A  RGDG  G++++  +R I  IP  L  + P    +RGE+Y++
Sbjct: 116 DGASISILYENGKLSQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPAQFFMRGEIYLT 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
           + +F  +N      G  P+ NPRN ASG L+  +  ++  R L+  ++    + E+ A+ 
Sbjct: 176 RKNFDKINKLREEEGLDPFMNPRNTASGSLKMQDSAEVRKRGLSSVLYQFI-SDEVPAES 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E+LQK +  GF  +   +   T   +  +     + R  LP++IDG+V KV+    Q+
Sbjct: 235 HWELLQKAQSWGFKTSQQAKLCKTMAEVQEFITFWDTERHNLPFEIDGIVLKVNSLQQQR 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  A+SPRW +++KF  ++  T L  +  Q+GRTG +TPVA L+PV + G ++  A+L
Sbjct: 295 QLGYTAKSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED IK L           D+   D V V++ GE+IPK+V +   +R  +++   +   
Sbjct: 355 HNEDIIKKL-----------DLHEHDFVYVEKGGEIIPKIVGVNTGKRTEESKEIEYIKH 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +V+  +       A H C   L C  Q + R+ H+VSR A NI+ LG + ++ 
Sbjct: 404 CPECGTELVKIEDQ------AIHFCPNELHCPPQVVGRMIHYVSRKALNIDNLGSETIEQ 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            ++       I  PAD + L + Q     ++       + S  N+   I K + +  E+ 
Sbjct: 458 LYRER----LIENPADFYVLTKEQLLPLERMA------EKSAQNIITGIEKSKEVPFEKV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ +GI+HVG  +A+ L K + + +             N     L +V  +G  IA +IV
Sbjct: 508 LYGIGIKHVGETVAKKLVKNFPTIEELK----------NATIEELCQVEDIGTKIAVSIV 557

Query: 614 EFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +F+QNP N+  +E L              + +S+ +E K  +FTG L    R  A+E V 
Sbjct: 558 DFFQNPENVLMIERLKSYGVQLEKGESTNEVLSNVLEGKTFLFTGKLSLFTRESAEEMVE 617

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
           + G    + +S+  + +IVG+  GSKL+KAQ +G + I++E+QFL L+++
Sbjct: 618 KHGGKNISAVSKNLNYLIVGEKAGSKLKKAQDIGTITILDEQQFLDLIEK 667


>gi|299145622|ref|ZP_07038690.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23]
 gi|298516113|gb|EFI39994.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23]
          Length = 666

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/710 (32%), Positives = 365/710 (51%), Gaps = 53/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKALN----EDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  LN E  A     +ANPRNAASG L+  N + +  R L+ +++ L     +   G
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDG 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK
Sbjct: 234 HYENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQK 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+L
Sbjct: 294 NLGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432
           HN D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F  
Sbjct: 354 HNADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIV 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D
Sbjct: 403 NCPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVD 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F++       IR  AD++ L         ++      G+ S  N+   I + + +  ER
Sbjct: 457 MFYR----LGLIRNTADLYKLTADDIKGLDRM------GEKSAENIVTGIAQSKTVPFER 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I
Sbjct: 507 VIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEY 669
           + ++ N  N   V A LKE    + R E+++S    ++  + +V +G      R + +E 
Sbjct: 557 LAYFANESNRELV-AKLKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEYKEL 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 616 IEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|120434999|ref|YP_860685.1| DNA ligase [Gramella forsetii KT0803]
 gi|166215777|sp|A0LZ23|DNLJ_GRAFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117577149|emb|CAL65618.1| DNA ligase [Gramella forsetii KT0803]
          Length = 664

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/708 (31%), Positives = 362/708 (51%), Gaps = 49/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  K++  L +E+  H+  YY   KP I D E+D   +    +   +P+    ED N P 
Sbjct: 2   EVEKKIRGLREELQQHNYNYYVLDKPQISDYEFDIKLKELQELEEKYPEF---EDDNSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +   V H     SL   ++ E+L ++  R+ +  +      I +  E K D
Sbjct: 59  RRVGGAVTKNFETVVHENRMYSLSNSYSKEELEEWEARLKKIVE----GKIQYVCELKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ YE G    A  RGDG  G+DV+  I+ I ++P  L    P   ++RGE+ +  
Sbjct: 115 GASISLTYENGILKRAVTRGDGFQGDDVTNNIKTIRSVPLKLKDEFPHKFDIRGEIVLPY 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
             F  +N E + +G +PYANPRN ASG L+  +  ++ R  L   ++ +          Q
Sbjct: 175 EGFAKMNAERVEMGEEPYANPRNTASGSLKLQDSAEVARRPLECLLYSI-TGENTGVASQ 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L+K R  GF V       ++   ++ Y N     R  LPY+ DG+V KV+ F  Q++
Sbjct: 234 FEGLEKARKWGFKVPAESELKDSIEEVLHYINYWDEHRHDLPYETDGVVVKVNNFHQQEE 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  +Q ST+L  I  Q+GRTG +TPVA L+ V + G ++  A+LH
Sbjct: 294 LGHTAKSPRWAIAYKFKAEQESTKLNKITYQVGRTGAITPVANLDAVQLAGTVVRRASLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L           D+R GD V V++ GE+IPK+V +   +R PD+ P  + + C
Sbjct: 354 NADQIEKL-----------DVREGDTVFVEKGGEIIPKIVGVDFTKRDPDSNPTQYATNC 402

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S ++R          A H C     C  Q + R++H++SR A +IEGLG + +   
Sbjct: 403 PECDSELIRKDGE------AQHYCPNVNGCPPQIIGRIQHYISRKAMDIEGLGGETVALL 456

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                 A  I   AD++ LQ+ +     ++       + S  NL + I + + I  ER +
Sbjct: 457 VN----ADLIESYADLYKLQKEEVLPLERMA------EKSAENLINGIERSKEIPFERVL 506

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR+VG  +A+ LAK++ S +         +          + +  +G+ IA ++VE
Sbjct: 507 FALGIRYVGETVAKKLAKHFKSIEALMAASEEEL----------VNIDEIGERIAWSVVE 556

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F+    N   VE L +         EK  +  + +E    V +G  +K+ R+  ++ +  
Sbjct: 557 FFNIEANRENVERLKEYGIQLEISAEKLANQTNILEGNTFVISGVFEKVSRNDLKKMIED 616

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  +S+ +S KT+ ++ GDN G SKL KA++LG  I++EE FL +L+
Sbjct: 617 NGGKLSSSISSKTNYLVAGDNMGPSKLAKAEKLGTSIISEEDFLKMLE 664


>gi|193212122|ref|YP_001998075.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327]
 gi|254781284|sp|B3QLI5|DNLJ_CHLP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193085599|gb|ACF10875.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327]
          Length = 674

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/716 (31%), Positives = 371/716 (51%), Gaps = 51/716 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +A++E+  L  EI  H+  YY  +KP I D E+D L  R  A+   FP+L     P
Sbjct: 1   MDKAKAQQEIGKLRAEIERHNRLYYLEAKPEISDFEFDKLLERLIALETEFPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      V H  P LSL   ++I ++  F TR+ +    +   +  +  E
Sbjct: 58  DSPSQRVGGGITKEFPTVIHREPMLSLSNTYSIGEVSDFCTRVEKLVAAEGGGTPEYVAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--------LNIPE 183
            K DG  I++ Y  G  V  + RGDG  G++++A ++ IP+IP  L           +  
Sbjct: 118 LKYDGVAISLFYRDGLLVRGSTRGDGRQGDEITANLKTIPSIPLRLQSAGGSLFDAAVNG 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            +EVRGEVY+ K+DF  LN+E      + +ANPRNA +G L+  +  ++ R    FV   
Sbjct: 178 EVEVRGEVYMRKDDFERLNEERPE--EERFANPRNATAGTLKLQDSAEVARRRMSFVAYY 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            K  +  A      L++++C+GF      R       I ++  E    R TLPY+ DG+V
Sbjct: 236 LKGHDGEAPTHLRRLEQLKCMGFMTGAAARLCKGMDEIANFIGEWSEKRWTLPYETDGVV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K++E  L  +LG  A+SPRW I++K+  +QA T L  +  Q+GR G +TPVA L+P  +
Sbjct: 296 LKLNEVGLWDRLGATAKSPRWAIAYKYPAQQAKTVLQGVVFQVGRLGTITPVAELKPTKL 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ ++ +TLHN D I+ L            +R+GD V+++++GEVIPKVV ++++ER  
Sbjct: 356 AGSTVSRSTLHNFDEIERL-----------GVRIGDHVMIEKSGEVIPKVVSVVLDERPA 404

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +      PS CP+C +++ R           +  C     C AQ+  R+ HF SR+A +I
Sbjct: 405 ETAEIEAPSECPVCGTKLERHEGE------VSWYCPNEEGCPAQKRGRILHFASRNALDI 458

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           + LG+  +    +       +    D+++L + Q  S  ++         S  N+ D++ 
Sbjct: 459 QNLGESLVSQLVER----GFVSDAGDLYSLTQEQLASLDRMAA------KSAQNVLDALE 508

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +  S  R +F+LGIRHVGA  AR LA    S     +     +A           VP 
Sbjct: 509 KSKKQSYARLLFALGIRHVGAATARELAHACPSIDRLREMGEEELAA----------VPD 558

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           +G +IA +I +F+  P     +E L     P   G  +  V++  E + ++FTG L++  
Sbjct: 559 IGPVIAASIRDFFAKPWVAAMLEKLAAAGLPMQAGEEKALVNTNFEGQSVIFTGGLERHV 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+E V + G  + + +S+KT +++ G   GSKLEKA +LGV++++E++F  +L
Sbjct: 619 RQQAEEMVRERGGKIVSSVSKKTTLVVAGKEAGSKLEKAMKLGVRVIDEDEFERML 674


>gi|298385661|ref|ZP_06995219.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14]
 gi|298261802|gb|EFI04668.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14]
          Length = 666

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/709 (31%), Positives = 355/709 (50%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEY---KDENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +++ +  +V H  P LSL   ++  ++  F  R+ +              E K D
Sbjct: 59  MRVGSDISKNFTQVAHKYPMLSLANTYSESEVTDFYERVRKALN----EDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  LN E  A     +ANPRNAASG L+  N + +  R L+ +++ L     +   G
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDG 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK
Sbjct: 234 HYENLQEAAKWGFKISDLTRKCQTLEEVFEFINHWDVERKNLPVATDGIVLKVNSLRQQK 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+ V + G ++  A+L
Sbjct: 294 NLGFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDAVQLSGTIVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432
           HN D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F +
Sbjct: 354 HNADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S+++R          AAH C    AC  Q   R++HF+SR A NI+GLG + +D
Sbjct: 403 NCPECGSKLIRYEGE------AAHYCPNETACPPQIKGRIEHFISRKAMNIDGLGPETVD 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F++       I   AD++ L+        ++      G+ S  N+   I + + +  ER
Sbjct: 457 MFYR----LGLIHNTADLYELKADDIKGLDRM------GEKSAENIITGIEQSKTVPFER 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIR VG  +A+ +AK +       Q           D   LI +  +G+ IA++I
Sbjct: 507 VIFALGIRFVGETVAKKIAKSFGDIDELQQA----------DLEKLISIDEIGEKIARSI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYV 670
           + ++ N  N   V  L +         E       ++  + +V +G      R + ++ +
Sbjct: 557 LLYFSNESNRELVGRLKEAGLQLYRTEEDMSGYTDKLAGQSIVISGVFTHHSRDEYKDLI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ GDN G +KLEKA++LGV I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGVTILSEDEFLKLI 665


>gi|199597353|ref|ZP_03210784.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001]
 gi|199591869|gb|EDY99944.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001]
          Length = 674

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/716 (34%), Positives = 372/716 (51%), Gaps = 51/716 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A  E++ L ++++     YY    P + D+ YD   R   A+  AFP L  
Sbjct: 5   PAAQFTLEEAEAEVAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+    Q    +++ 
Sbjct: 64  --TPDSPTQQVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QANVGHAVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE G+ V  + RGDG+ GEDV+  +  I ++P+ L    P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNIGEDVTKNVLTIASVPKTLK--RPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGE Y+ K  F  LN    A G  P+ANPRNAA+G LR+LNP     R L+ F++ L   
Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPKITAGRELDTFIYTLIDA 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K Q+E +  M+ LGF  N     A+    I +Y  +  S R  LPY IDG+V KV
Sbjct: 236 DRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V ER  +  
Sbjct: 356 TVARATLHNADMIRD-----------KDIRIGDTVMLHKAGDIIPEVSRVLVKERPANTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEKCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +      +     +   AD++ L         K      F + S+ NL ++IN  R
Sbjct: 458 GPKIIAQLQAKK----LVTDVADLYRLTATDLEKLDK------FKEKSINNLLNAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++ S                 D   +  +P +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGSLDELMAA----------DQDQVAAIPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+A+V +++       VE L         +         S +  K +V TG   +  R
Sbjct: 558 TIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPTRPAVSDSFVSGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + + QLGA V+  +S+KTD++I GD  GSKL KAQ L V IM+E   L  L+
Sbjct: 618 PELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLTNLK 673


>gi|119503165|ref|ZP_01625249.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
 gi|119460811|gb|EAW41902.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
          Length = 673

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/708 (32%), Positives = 364/708 (51%), Gaps = 47/708 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S      E+  L   +      YY+   P + DSEYD        +   FP L      
Sbjct: 1   MSEVDPYDEVMRLRDLLRSWGVEYYRNDAPTVSDSEYDRTLLALRELEQKFPHLV---SA 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G         V H +P LSL+  +N +DL  F  R+       D   + +  E
Sbjct: 58  DSPTQRVGAAPLEGFETVVHRLPMLSLDNAFNADDLLDFDRRVRERL---DGAQVRYACE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  ++I +++G+   AA RGDG +GE+++  +R I ++P  L   NIP  +E RGE
Sbjct: 115 PKLDGIAVSIVWQEGELTLAATRGDGRTGENITQNVRTIDSVPLRLSGENIPRYLEARGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEI 249
           +++ +  F A N      G KP+ NPRNAA+G LR+L+ +   R  L+F  +GLG    +
Sbjct: 175 IFMPRAGFEAFNARARRDGGKPFVNPRNAAAGSLRQLDSSITRRRPLSFCAYGLGYVEGM 234

Query: 250 FAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E + ++   G P++   R      G   YY ++  +R  L +DIDG+V+KVD
Sbjct: 235 SGALLSHTEAMAQLNQWGLPISEHSRSVPGIDGCERYYEDLSQVREGLGFDIDGIVFKVD 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F+ Q++LG  +R+PRW I+ KF  ++  T +L ++ Q+GRTG +TPVARL+PV +GG  
Sbjct: 295 TFAEQERLGFVSRAPRWAIARKFPAQEEMTVVLGVEFQVGRTGAVTPVARLDPVFVGGVT 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I  L            I+VGD V+V+RAG+VIP+V  ++V+ R P A+ 
Sbjct: 355 VSNATLHNADEIARL-----------GIKVGDTVIVRRAGDVIPQVAGVVVDRRLPQAED 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            +FP  CP C S +VR+         A  RC  G AC AQ+   ++HFVSR A +I+G G
Sbjct: 404 VAFPDSCPACDSVLVREPGE------AVWRCDAGSACPAQRRAAIEHFVSRRAMDIDGCG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +D     +     I+  +D++ L +       ++         S  NL  +I   +N
Sbjct: 458 EKIIDQLVDLD----LIKTASDLYELSQDTLAGLERMGT------KSAKNLQAAIEDSKN 507

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RFI++LGIR VG   AR LA+Y+ +        +  +            V  VG I
Sbjct: 508 TTLSRFIYALGIREVGETTARQLAEYFGALAPLFTATDEQLQ----------EVEDVGPI 557

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A  +  F+ +P     + +L+           +     +  +  V TG L+++ R +A+
Sbjct: 558 VAGHLQRFFADPGRQEMINSLISHGVYWPAPEVQIGDLPLSGQTWVVTGKLEQMSRDQAE 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           E +   GA VS+ +S KT  ++ G   GSKL+KA  L V +++E +F+
Sbjct: 618 ERLRVFGAKVSSSVSGKTSCVVAGPGAGSKLKKAHSLEVSVIDEAEFI 665


>gi|294673321|ref|YP_003573937.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23]
 gi|294473291|gb|ADE82680.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23]
          Length = 674

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/714 (30%), Positives = 358/714 (50%), Gaps = 59/714 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L +E+  H+  YY  ++P I D E+D +      +    P++A   DPN P  ++
Sbjct: 5   KRIEQLRKELHEHNYKYYVLNQPTIGDQEFDFMMHELQDLEAKHPEMA---DPNSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N    +V H  P LSL   +N +D+  +   + +              E K DG  
Sbjct: 62  GSDLNEEFRQVEHKYPMLSLANTYNEQDVADWYESVKKGL---AGEDFEVCCEMKYDGLS 118

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----------IPEIIEVR 188
           I++ Y  GK   A  RGDG  G+DV+  ++ I +IP VL+             P   E+R
Sbjct: 119 ISLTYVDGKLTQAVTRGDGVHGDDVTTNVKTIRSIPLVLTPPAAGDLFAAPAYPREFEIR 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR-RLNPTDITRYLNFFVHGLGKTS 247
           GE+ +  + F  LN E        +ANPRNAASG L+ + +    +R L+ +++ L    
Sbjct: 179 GEILMPWSVFERLNKEREEAEEPLFANPRNAASGTLKSQKSSLVASRQLDAYLYYL-LGE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A+G YE L+  R  GF ++ G+++  T   I  + N   + R  LP   DG+V KV+
Sbjct: 238 ELPAEGHYENLEVARSWGFKISEGMKKVKTLQQIYDFINYWDTERKKLPVATDGIVLKVN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q+ LG  A+SPRW I++KF  ++  TRL ++  Q+GRTG +TPVA ++PV + G  
Sbjct: 298 SIRQQRALGFTAKSPRWAIAYKFKAERVCTRLNEVTYQVGRTGAITPVANMDPVQLAGTT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+NED+IK             D+ +GD V V++ GE+IPK+V + +++R   AQP
Sbjct: 358 VKRATLNNEDFIKSF-----------DLHIGDYVYVEKGGEIIPKIVGVDIDQRPIIAQP 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             F   CP C + +VR          AA  C     C  Q   R++HF++R A NI+ LG
Sbjct: 407 VEFIKRCPECGTPLVRYEGE------AAWYCPNDSGCPPQIKGRIEHFIARKAMNIDSLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +D +++       I   AD++ +  +Q        N  G    S   + + I   + 
Sbjct: 461 PETVDDYYRH----GLIHNIADLYDIDVQQ-------INGDGSRTKSAQRIVNGIAASKE 509

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +  ER +F+LGIR VG   A+ LA+++ +            A  N     L  +  +G++
Sbjct: 510 VPFERVVFALGIRFVGETSAKLLARHFKNID----------ALMNAGIEELQEIEGIGEV 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A++I+ ++    N+  +E L               N+S ++  + +V +G      R +
Sbjct: 560 MAKSIITYFHTEENLKIIERLRNYGLQMELSEAQTANISDKLAGQSIVISGVFAHHSRDE 619

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            +  + Q G      +S KT  I+ G+N G SKL+KA++LG+KIM+EE+FL ++
Sbjct: 620 YKAIIEQNGGKNVGSISSKTSFILAGENMGPSKLQKAEKLGIKIMSEEEFLEMI 673


>gi|145224827|ref|YP_001135505.1| NAD-dependent DNA ligase LigA [Mycobacterium gilvum PYR-GCK]
 gi|190359265|sp|A4TDZ8|DNLJ_MYCGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145217313|gb|ABP46717.1| DNA ligase, NAD-dependent [Mycobacterium gilvum PYR-GCK]
          Length = 712

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/740 (30%), Positives = 353/740 (47%), Gaps = 54/740 (7%)

Query: 1   MKKRQLIPIEALSIEQA--------RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALK 52
           M    +   E++  EQA        R+    L  E+  H   YY    PII D+E+D L 
Sbjct: 1   MSPEAIPDPESMLAEQAHDALDPDLRRSWQELADEVREHQFRYYIRDAPIITDAEFDQLL 60

Query: 53  RRCDAIAHAFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111
           RR  A+   +P+L     P+ P   +GG           H    LSL+ ++++E+L  + 
Sbjct: 61  RRLQALEDEYPEL---RTPDSPTQLVGGAGFATDFTAAEHLERMLSLDNVFDLEELAAWA 117

Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171
            RI             +  E KIDG  + + Y  G+   AA RGDG +GEDV+   R I 
Sbjct: 118 ARIRTEIGA----DAQYLCELKIDGVALALVYRDGRLERAATRGDGRTGEDVTLNARTIE 173

Query: 172 TIPRVLSL----NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL 227
            IP  LS      +P ++EVRGEV+    DF  LN  ++A G+ P+ANPRN+A+G LR+ 
Sbjct: 174 DIPERLSGTNEFPLPTVVEVRGEVFFRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQK 233

Query: 228 NPTDITRY-LNFFVHGLGKTS---EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS 283
           NP    R  L    HGLG             ++  + ++  G PV++   Q      +  
Sbjct: 234 NPAVTARRRLRMICHGLGHVESSGGSPFPTLHDAYRALKAWGLPVSDHTAQVTGLDAVTE 293

Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343
                   R  + ++IDG+V KVD  +LQ++LG  +R+PRW +++K+  ++A TRLLDI 
Sbjct: 294 RIAYWGEHRHDVEHEIDGVVVKVDAVALQRRLGATSRAPRWAVAYKYPPEEAQTRLLDIR 353

Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403
           + +GRTG +TP A +EPV + G+ +  ATLHN   +K            + + +GD V++
Sbjct: 354 VNVGRTGRVTPFAYMEPVKVAGSTVGLATLHNASEVKR-----------KGVLIGDTVVI 402

Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
           ++AG+VIP+V+  +V+ R    + F FP+ CP C S +         +  A  RC    +
Sbjct: 403 RKAGDVIPEVLGPVVDLRDGSEREFVFPTHCPECGSEL-----APAKEGDADIRCPNTRS 457

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523
           C AQ  ER+ H   R AF+IEGLG +      +    A  I    D+F L       T  
Sbjct: 458 CPAQLRERVFHVAGRGAFDIEGLGYEAATALLQ----AGVIADEGDLFGLTADDLLRTEL 513

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
                G    +   L  ++ K +   L R + +L IRHVG   AR+LA  + S +     
Sbjct: 514 FTTKAGELSANGKRLLANLGKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLEAIETA 573

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
               +A              VG  IA A+++++    +   V+   +         + ++
Sbjct: 574 SEEQLAGT----------EGVGPTIAAAVIDWFTVDWHRAIVDKWREAGVRMADERDASI 623

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TG+L    R +A+E +   G   +  +S+KT  ++ GD PGSK +KA +
Sbjct: 624 ERTLEGLSIVVTGSLAGFSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAIE 683

Query: 704 LGVKIMNEEQFLFLLQQYNT 723
           LGV +++E+ F  LL +   
Sbjct: 684 LGVPVLDEDGFRRLLAEGPE 703


>gi|169630426|ref|YP_001704075.1| NAD-dependent DNA ligase LigA [Mycobacterium abscessus ATCC 19977]
 gi|254781373|sp|B1MDV2|DNLJ_MYCA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169242393|emb|CAM63421.1| DNA ligase (polydeoxyribonucleotide synthase NAD+) [Mycobacterium
           abscessus]
          Length = 681

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/715 (30%), Positives = 348/715 (48%), Gaps = 43/715 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +++   L +E+  H   YY    P+I D ++D L RR  A+   +P+L     P+ P 
Sbjct: 4   DIQRQWGELAEEVRGHQFRYYVKDAPVISDGQFDELLRRLTALEEQYPEL---RTPDSPT 60

Query: 76  NKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +GG         V H    LSL+  ++ ++L  +  R+             +  E KI
Sbjct: 61  QLVGGAGFVTEFRSVDHLERMLSLDNAFSSDELTAWDARVRGDIG----QEPEYLCELKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGE 190
           DG  +++ YE G  V  A RGDG SGEDV+   R I  +P  L       IP ++EVRGE
Sbjct: 117 DGVALSLVYENGVLVRGATRGDGRSGEDVTLNARTIEDVPERLAKSEKYPIPALLEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249
           V+    DF ALN  ++   + P+ANPRN+A+G LR+ NP    R  L    HGLG+    
Sbjct: 177 VFFRLEDFEALNASLVEESKPPFANPRNSAAGSLRQKNPAITARRRLRMICHGLGRAEGF 236

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +  ++    +   G PV+    +      +    N     R  + ++IDG+V KVD  
Sbjct: 237 SPESLHDAYLALGEWGLPVSTHTTKVRGIAKVQERVNYWAEHRHDVEHEIDGVVVKVDTV 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW I++K+  ++A+T LLDI + +GRTG +TP A + PV + G+ ++
Sbjct: 297 ALQRRLGSTSRAPRWAIAYKYPPEEATTELLDIRVSVGRTGRVTPFAYMTPVKVAGSTVS 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +K            + + +GD V++++AG+VIP+V+  + + R+ + + F 
Sbjct: 357 LATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVADLRNGNEREFV 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +  +      +  A  RC    +C AQ  ER+ H   R AF+IE LG +
Sbjct: 406 MPTACPECGTTLAHEK-----EGDADIRCPNSRSCPAQLRERVFHVAGRGAFDIEALGYE 460

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                      A  I    D+F L       T   +   G    +   L D+++K +   
Sbjct: 461 AAIALL----AAGVIEDEGDLFGLTADDLLRTDLFKTKSGALSANGARLLDNLDKAKQQP 516

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA  +   +          A        L  V  VG  IA
Sbjct: 517 LWRVLVALSIRHVGPTAARALATEFGDLE----------AIEGASVEQLAAVEGVGATIA 566

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            A+V+++    +   V+        +    + ++   +E   +V TG+L    R +A+E 
Sbjct: 567 AAVVDWFSVDWHRAIVDKWRAAGVRTADERDDSIPRNLEGLSIVVTGSLPGFSRDEAKEA 626

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +   G   ++ +S+KT  ++VGD+PGSK +KA +LGV I++E+ F  LL      
Sbjct: 627 IIARGGKSASSVSKKTAFVVVGDSPGSKYDKAVELGVTILDEDGFRALLADGPPA 681


>gi|319892947|ref|YP_004149822.1| DNA ligase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162643|gb|ADV06186.1| DNA ligase [Staphylococcus pseudintermedius HKU10-03]
          Length = 667

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/715 (33%), Positives = 371/715 (51%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + +  L + +  ++  Y+    P + DSEYD L      I    P+L  S   + 
Sbjct: 1   MSSIAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIETKHPELKTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N  DLRKF  R+           + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLSNAFNEADLRKFDQRVRD-----AVGEVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  GK V    RGDG +GED++  ++ I  IP  L   I    EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGKLVQGLTRGDGTTGEDITENLKTIYAIPLTLDKKI--SFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+   A   +P+ANPRNAA+G LR+L+      R L+ F++ +   +E+ A 
Sbjct: 171 PRQSFLKLNEAKAARDEQPFANPRNAAAGSLRQLDSKLAAARKLDIFLYSINDFTELDAS 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N+   +  T   ++ Y  +  + R  LPYDIDG+V KV+    Q
Sbjct: 231 SQSEALDELDELGFKTNHEREKVKTIDEVLEYIKKWTNQREQLPYDIDGIVIKVNHLEHQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGFTQKSPRWAIAYKFPAEEVITELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +DIR+GD V++K+AG++IP+VV +I++ R   A+ +  P+
Sbjct: 351 LHNEDLIH-----------EKDIRIGDSVVIKKAGDIIPEVVRVILDRRPEGAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + ++
Sbjct: 400 HCPSCDHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIE 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +        I+  ADIF L +       ++      G+     L D+I   +  SLE 
Sbjct: 453 QLYTHA----LIKDVADIFYLTKEDLLPLERM------GEKKAQKLIDAIETSKARSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +         + +          + +  VG+ +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLTVTEDEL----------VEIYDVGEKLAQSL 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E L  +      + +K        E   K +V TG LQ++ R++A  
Sbjct: 553 VTYLENEDIRALIEKLQSKGVNMTFKGQKLSQIEGHPEFAGKTIVLTGKLQQMTRNEATN 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG  I  E+ F+    + N 
Sbjct: 613 WLKLQGAKVTSSVTKSTDLVIAGEDAGSKLTKAQSLGTMIWTEQDFIDKQNEINE 667


>gi|323464000|gb|ADX76153.1| DNA ligase, NAD-dependent [Staphylococcus pseudintermedius ED99]
          Length = 667

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/715 (33%), Positives = 371/715 (51%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + +  L + +  ++  Y+    P + DSEYD L      I    P+L  S   + 
Sbjct: 1   MSSIAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIETKHPELKTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N  DLRKF  R+           + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLSNAFNEADLRKFDQRVRD-----AVGEVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  GK V    RGDG +GED++  ++ I  IP  L   I    EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGKLVQGLTRGDGTTGEDITENLKTIYAIPLTLDKKI--SFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+   A   +P+ANPRNAA+G LR+L+      R L+ F++ +   +E+ A 
Sbjct: 171 PRQSFLKLNEAKAARDEQPFANPRNAAAGSLRQLDSKLAAARKLDIFLYSINDFTELDAS 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N+   +  T   ++ Y  +  + R  LPYDIDG+V KV+    Q
Sbjct: 231 SQSEALDELDELGFKTNHEREKVKTIDEVLEYIKKWTNQREQLPYDIDGIVIKVNHLEHQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGFTQKSPRWAIAYKFPAEEVITELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +DIR+GD V++K+AG++IP+VV +I++ R   A+ +  P+
Sbjct: 351 LHNEDLIHD-----------KDIRIGDSVVIKKAGDIIPEVVRVILDRRPEGAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + ++
Sbjct: 400 HCPSCDHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIE 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +        I+  ADIF L +       ++      G+     L D+I   +  SLE 
Sbjct: 453 QLYTHA----LIKDVADIFYLTKEDLLPLERM------GEKKAQKLIDAIETSKARSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +         + +          + +  VG+ +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLTVTEDEL----------VEIYDVGEKLAQSL 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E L  +      + +K        E   K +V TG LQ++ R++A  
Sbjct: 553 VTYLENEDIRALIEKLQSKGVNMTFKGQKLSQIEGHPEFAGKTIVLTGKLQQMTRNEATN 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG  I  E+ F+    + N 
Sbjct: 613 WLKLQGAKVTSSVTKSTDLVIAGEDAGSKLTKAQSLGTMIWTEQDFIDKQNEINE 667


>gi|149275978|ref|ZP_01882123.1| DNA ligase [Pedobacter sp. BAL39]
 gi|149233406|gb|EDM38780.1| DNA ligase [Pedobacter sp. BAL39]
          Length = 671

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/713 (29%), Positives = 370/713 (51%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + + ++ +L +E++ H   YY  + P I D E+D      + +   +P+ A   DP
Sbjct: 1   MSKNEVKDKMDALVKELNQHTYDYYVLAMPTIADYEFDRKLAALNKLEQQYPEYA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG++  +   V H  P LSL   +N +DLR F  R+ +       +   +  E
Sbjct: 58  NSPTQQVGGDITKNFTTVAHKWPMLSLGNTYNEQDLRDFDERVRKAIG----DQFQYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190
            K DG  I++ YE  K + A  RGDG  G+DV+  ++ I  IP  LS   IP + E+RGE
Sbjct: 114 LKFDGVSISLTYEDQKLLRAVTRGDGTKGDDVTTNVKTIRNIPHKLSSGTIPSLFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + + +  F  LN E   +G   YANPRN A+G ++  +  ++  R L+ F++    T + 
Sbjct: 174 ILMHRAAFERLNKEREELGEVTYANPRNFAAGTVKMQDSREVAKRPLDCFLYYF-NTDKS 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K  +E L+ ++  GF V+   R  NT   ++ + +  +  R  L YDIDG+V KV+ +
Sbjct: 233 PFKTHWESLETLKSWGFHVSEHSRLGNTIEEVLEFISYWEKERFNLSYDIDGIVIKVNSY 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q +LG  A+SPRW IS+K+  ++  T L  +  Q+GRTG +TPVA L+PV + G  + 
Sbjct: 293 AQQAELGFTAKSPRWAISYKYKAQEVETILERVTYQVGRTGAVTPVANLKPVLLAGTTVK 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + I+ L           D+  GD V V++ GE+IPK++++ +++R   A    
Sbjct: 353 RATLHNANEIERL-----------DLHEGDSVFVEKGGEIIPKIINVNLDKRENGAVKII 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           +P+ CP C + ++R           A+ C    AC  Q + +++HF+ R A +I+GLG +
Sbjct: 402 YPTQCPECGTTLIRKEGE------VAYYCPNDEACPPQIVGKIQHFIGRKAMDIDGLGDE 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++  ++       ++  +D++ L +R    T +++ I  FG+ S+ N+   I   + + 
Sbjct: 456 TIETCYQH----GLLKHISDLYVLHQR----TEELKAIDRFGERSIENMLKGIESSKQMP 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             + +F LGIR+VG  +AR LA    +    A      +            +  +G  IA
Sbjct: 508 FAKVLFGLGIRYVGETVARKLAVATKNIDTLATASLETLTA----------IDEIGQRIA 557

Query: 610 QAIVEFYQNPRNICAVE--ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           ++I+E++  P +I  +E          S  +  +  S ++  K  V +G  +   R + +
Sbjct: 558 ESIIEYFAKPEHIQQIELLKSYGLQFESDEKEIELQSDKLTGKTFVISGVFENYSREELK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           E +   G  + + +S K + ++ GDN G SKLEKA++L + ++++++ L LL 
Sbjct: 618 EIIELNGGKILSSISAKLNFLVAGDNMGPSKLEKAKKLNIPLISQDELLALLN 670


>gi|320354711|ref|YP_004196050.1| NAD-dependent DNA ligase [Desulfobulbus propionicus DSM 2032]
 gi|320123213|gb|ADW18759.1| DNA ligase, NAD-dependent [Desulfobulbus propionicus DSM 2032]
          Length = 670

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/714 (34%), Positives = 397/714 (55%), Gaps = 50/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +A   L  L  ++ +H   YY    PII D EYDAL R   A+   +P+L  +   
Sbjct: 1   MDKGRAADRLEELRGQLRFHAHRYYVLDDPIISDGEYDALFRELLALEQEYPELVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P +++GG    S  +V H+ P LSL+ I+++++L  F+ + +RF +   D  + F  E
Sbjct: 58  DSPSHRVGGPPLHSFAQVEHASPMLSLDNIFDVQELAAFVDKSFRFLK--ADGPLCFMTE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEV 187
           PK+DG  + + Y +G     + RGDG  GED++A ++ +P+IP        +   E + V
Sbjct: 116 PKLDGLAVELVYRQGMLAVGSTRGDGLVGEDITAQLKTVPSIPLRFINNEGIGGAEELIV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKT 246
           RGEV++SK  F  LN +    G   +ANPRNAA+G LR+L+P    R  L+FFV+G+   
Sbjct: 176 RGEVFLSKQGFQLLNQQRQEAGEPLFANPRNAAAGSLRQLDPRITARRRLDFFVYGVANP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             + AK Q E+   +  LGFPVN  V+   T   I   Y+ M   R  L Y+IDG+V K+
Sbjct: 236 DSLAAKSQEEVFHGLARLGFPVNPLVQVCATEEEIRQRYHFMLGARHDLTYEIDGIVVKI 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++  LQ++LG  AR+PRW ++ KF   QA+T +  ++ Q+GRTG +TPVA L PV I G 
Sbjct: 296 NDLGLQQRLGTTARAPRWAVAWKFPATQATTVVERVEFQVGRTGAITPVAHLRPVEIDGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++  ATLHN+D I             +D+   D VLV+RAG+VIP++V +I  +R     
Sbjct: 356 VVKRATLHNQDEIVR-----------KDLYRYDTVLVQRAGDVIPEIVKVIAEKRDGRQV 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP C   +V+  +       AA RC     C AQQ+++L HF  +   +IEGL
Sbjct: 405 PILFPAECPECGQPLVQKPDE------AAIRCVNP-DCPAQQVQKLIHFAGKSGLDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           GK+ ++   +       +R   D+F L+  +  S        G+G+ S  N+ ++I +RR
Sbjct: 458 GKKNVEQLVRE----GLVRSIPDLFNLRMDKLASLD------GWGEKSARNILEAIEQRR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           ++ L +FI +LGIRHVG   A  LA+++       +E+  ++A   +  L   RV  +G+
Sbjct: 508 SLPLAQFIAALGIRHVGEVTASVLAEHF-------RELRELMAAKKEALL---RVEGIGE 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             A +++E++Q+P  +  VE L +     + R      + +  +  +FTGTLQ + R +A
Sbjct: 558 QTADSVIEYFQDPLTVAMVEQLNRAGV--VIRSSTAGGAPLTGRVFLFTGTLQTLSRDEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ V  LGA V+  +S +   ++ G+  GSKL+KA+++G+ I+ E+QFL L+ +
Sbjct: 616 KQLVKALGAQVATSMSHRVTDVVSGEKAGSKLKKAKEMGLPILTEQQFLPLVAR 669


>gi|318040766|ref|ZP_07972722.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0101]
          Length = 690

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/722 (29%), Positives = 346/722 (47%), Gaps = 49/722 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    S+       + L Q ++     YY    P + D  YD L R    +  A P+L  
Sbjct: 4   PAPDESLAAPHARAAELRQLLNRAAHAYYVLDAPEMEDPVYDRLYRELLDLETAHPELIA 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++GG        V H I  LSL+  +N  +L  +  R+ +   ++   ++ 
Sbjct: 64  ---PDSPTQRVGGAPAEGFQSVQHRIGLLSLDNAFNTGELEAWYARLLKVLDREPAAALP 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186
              E KIDG  + + YE G  V AA RGDG  GE+++A +R I ++P  L L + PE +E
Sbjct: 121 MVGELKIDGNALALSYEHGVLVRAATRGDGEQGEEITANVRTIGSVPLRLQLEHPPEWLE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGE +I    F A+N E  + G   +ANPRNA +G LR+L+P  +  R L+FF + L  
Sbjct: 181 VRGEAFIPDGTFTAINAERESRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHL 240

Query: 246 TSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                    Q+E LQ ++  GF VN           + +++    + R  L Y  DG+V 
Sbjct: 241 PPGTQGPASQWESLQWLKAAGFKVNPNAELLPDLAAVEAFFERWDTGRRQLDYATDGVVV 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+++ +LQ   G   ++PRW I+ K+  ++A ++LL +  Q+GRTG++TPVA  EPV + 
Sbjct: 301 KLNDLALQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLACQVGRTGVVTPVAEFEPVPLA 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ ATLHN D +  L           D+  GD ++V++AGE+IP+VV ++   R   
Sbjct: 361 GTSVSRATLHNADRLVEL-----------DLHAGDTIVVRKAGEIIPEVVRVLAELRPAG 409

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           AQ    P  CP C S +VR+         AA RC    +C A     L+H+VS+ A +++
Sbjct: 410 AQRLELPHTCPECGSELVREEGE------AATRCVNS-SCPAILRGALRHWVSKGALDVD 462

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + ++           +   AD++ L      S  ++ +       S  NL  ++  
Sbjct: 463 GLGSKLIEQLVDR----GLVGSIADLYRLDGALLASLERMGS------KSADNLVAALAA 512

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +     R ++ LGI HVG   A++LA  + S          +     D    +  V  +
Sbjct: 513 SKAQPWNRQLYGLGIHHVGEVNAKTLASAFPSAA-------ELATAATDTPELITAVYGI 565

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEV--------SPSIGRHEKNVSSEIENKKLVFTG 656
           G  IAQ++ +++    N   +  L +            +        S+++  +  V TG
Sbjct: 566 GGEIAQSLQQWFATAANQELLSQLERLGFSLATSDEELAAAAERSAASAQLNGQTFVLTG 625

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R +A+  +   G  VS  +S+KT  ++ GD  GSKL KA+ LGV +++E     
Sbjct: 626 TLPSMSRSEAKALIEAAGGKVSGSVSKKTSYVVAGDEAGSKLSKAESLGVAVLDEAGLQA 685

Query: 717 LL 718
           LL
Sbjct: 686 LL 687


>gi|227432449|ref|ZP_03914436.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351770|gb|EEJ42009.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 680

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/715 (33%), Positives = 376/715 (52%), Gaps = 51/715 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             PIE L+ + A++E + L++++  +   YY+   P++ D  YDAL  R  A+   FP  
Sbjct: 5   FTPIEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKFPQY 64

Query: 66  ARSEDPNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
                P+ P   +G  +    L KV H  P LSL  ++++++L  +  R  +       N
Sbjct: 65  VI---PDSPTQNVGSADTKSELQKVVHPAPMLSLGDVFSLDELNDWDARTTKSLG----N 117

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
              + LE KIDG  + + Y  G+ V A+ RG+G  GEDV+A ++ I  IP+ L+   P  
Sbjct: 118 QAPYNLELKIDGLAVALTYVNGQLVQASTRGNGIVGEDVTANVKTIKAIPKKLTE--PLT 175

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243
           IEVRGE+Y+ K  F ALN +  A G +P+ANPRNAA+G LR+LN     +R L  FV+  
Sbjct: 176 IEVRGEIYMPKASFAALNKQREADGLEPFANPRNAAAGSLRQLNVKITKSRNLAAFVYYT 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            +   +    Q   L++   LG P +   R  N    I  Y +E  S R +L Y IDG+V
Sbjct: 236 AEPEMLGVTTQSGALERFAELGLPTDTHNRVINKMTDIAGYIDEYTSERESLSYGIDGVV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++  LQ  LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV +
Sbjct: 296 VKVNQLDLQFDLGNTVKIPRWAIAYKFPPEEALTTVRDIEWTVGRTGAVTPTAVMDPVLL 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  A+LHN DY++            +DI++GD V + +AG++IP++  +I+ +R  
Sbjct: 356 AGTTVQRASLHNPDYLR-----------EKDIQIGDTVTLHKAGDIIPEIGQVILEKRPT 404

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D++ +  P+ CP C+S +V            A RC     CSAQ  E L HF SR+A NI
Sbjct: 405 DSETYQVPTICPACESNLVHIEGE------VALRCINPF-CSAQIQEGLTHFASRNAMNI 457

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + +    K    A  I+  A I+ +   Q  +  K      F + S   L D+IN
Sbjct: 458 DGMGPRVVGQLLK----AGYIKDVASIYRITVEQLLTLDK------FQEKSAVKLIDAIN 507

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  SLER +F LGIR VGA+ AR +A+ + +            A +      +  +  
Sbjct: 508 SSKENSLERLLFGLGIRMVGAKAARLIAEKFRTLS----------AVSEASVEDIANING 557

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKI 661
           +G  IAQ+IV+++  P +   +  L           +  +  +S    KK+V TG L++ 
Sbjct: 558 IGHTIAQSIVQYFSTPESKQLLVELASSGVNQSYLSDTVIDENSFFYGKKVVLTGKLEQS 617

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            R  A +++   GA V+  +S KTD++I G+  GSKL+KA QLGV +  E+QF+ 
Sbjct: 618 SRPAATKWLQDHGANVAGSVSVKTDLVIAGEAAGSKLDKASQLGVTVWTEQQFVD 672


>gi|306819948|ref|ZP_07453599.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551984|gb|EFM39924.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 675

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/707 (32%), Positives = 397/707 (56%), Gaps = 50/707 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SI++AR ++  L+ EI  ++  YY+   P+I D +YD + R+  ++   +P+L   + P+
Sbjct: 3   SIDEARVKIEELKAEIEKNNKLYYEDDNPVISDYDYDMMMRQLISLEEKYPEL---KTPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P N++GG+      ++ H    +SL   +   +LR F ++I  + +        + +E 
Sbjct: 60  SPSNRVGGKALSKFEQIRHDRVMMSLSNAFTAGELRDFDSKIKEYTKNP-----KYVVEF 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  + ++YEKG  + A  RGDG +GE+V+   + I +IP  L   +   +EVRGE +
Sbjct: 115 KIDGLTLVLKYEKGILISAGTRGDGVTGENVTQNAKTIKSIPLKLKEEV--DVEVRGEAF 172

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           I K  F A+N+  I    K +ANPRN A+G LR+L+P    +R L+ F+  + +      
Sbjct: 173 IPKEVFYAINEMQIENDEKTFANPRNMAAGSLRQLDPKITASRKLDIFIFSV-ENDIEGK 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +E+L  ++ LG  ++   +  N    +++   +    R  LP++IDG+V K+D+ +L
Sbjct: 232 NSHFELLDYVKDLGMKISPEKKLCNDIEEVIAEIEKWTDKRFDLPFEIDGMVVKLDDIAL 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           + ++G  +++P+W I++KF  ++  T++ DI +Q+GRTG+LTP A L+ V I G++++ A
Sbjct: 292 RDEIGSTSKAPKWAIAYKFPPEKVRTKVEDIIVQVGRTGVLTPTAILDTVRISGSMVSRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNEDYIK            +DI++GD V +++AGE+IP+V ++  N R  + + F  P
Sbjct: 352 TLHNEDYIK-----------EKDIKIGDYVYIQKAGEIIPEVYEVDKNARTGEEREFEMP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C  + VR  N       A+ +CT  ++C AQ   ++ HFVS+ A +I+G G++ +
Sbjct: 401 HNCPVCGEKTVRFENE------ASWKCTN-ISCKAQLQRKIIHFVSKGAMDIDGFGEKIV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              F+       I+  +DI+TL+          +N+   G+ S  NL ++I   +N+SL+
Sbjct: 454 IQLFEE----GLIKDISDIYTLKADVL------KNLERMGEKSANNLINAIENSKNVSLD 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +FIF+LGIR +GA   + LAK + +     +   + +            +  +G+ +A +
Sbjct: 504 KFIFALGIRFIGANAGKVLAKNFDNIGQLMESSVDRLTA----------IDEIGEKMAMS 553

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IVEF++   N   VE LL      I +   +  S   N K+V TGTL+K +R   Q+ V 
Sbjct: 554 IVEFFEIQSNRDLVEKLLALGVNPISKSNSSQKSIFLNLKVVATGTLEKFKRDDIQKIVE 613

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + G  +S+ +S+KT+ ++ G+  GSKL+KA QLGVK+++E  F  LL
Sbjct: 614 ENGGKLSSSVSKKTNFVVAGEAAGSKLDKANQLGVKVISENDFEKLL 660


>gi|325288902|ref|YP_004265083.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964303|gb|ADY55082.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271]
          Length = 671

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/694 (34%), Positives = 359/694 (51%), Gaps = 49/694 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L+ +I   D  YY    P I D EYD L R    I  A P+      P+ P  ++
Sbjct: 13  ERLNQLKTQIEEADYRYYVLDDPQITDKEYDLLMRELVEIEGAHPEWV---SPDSPSQRV 69

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG  +    KV H  P LSL+  +  E+L +F  R+             + +E KIDG  
Sbjct: 70  GGGPSAQFAKVRHREPLLSLDNAFGREELAEFDRRVRGVVP-----DAEYVVELKIDGLT 124

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           + + YE+G    AA RGDG +GE+++A +R I ++P  L        +++RGE Y+ K  
Sbjct: 125 VALTYEEGILTRAATRGDGETGEEITANVRTIKSVPLSLRSRPAAGRLDIRGEGYLPKES 184

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F+ LN E    G+  +ANPRNA +G LR+L+      R L +F + L +  +I  K Q E
Sbjct: 185 FVRLNREREEEGQPLFANPRNAGAGSLRQLDSRITAGRKLGYFAYQLIQAEQIGLKTQAE 244

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +LQ ++  GF VN+  +  +    ++ Y  EM   R  LPY+IDGLV KV+ F  Q++LG
Sbjct: 245 VLQTLKEWGFQVNDSYKIFSKMEKVMEYCQEMTEERHQLPYEIDGLVIKVNRFDQQRELG 304

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  +Q  T +  IDI +GRTG+LTP A ++ V + G+ +  ATLHN 
Sbjct: 305 FTAKSPRWAIAYKFPAEQVETVVKSIDINVGRTGVLTPTAIMQEVFVAGSTVARATLHNL 364

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD VL+ +AG+VIP+++  I  +R      F+ P  CP 
Sbjct: 365 DNIR-----------EKDIRIGDHVLLHKAGDVIPEIIKSIPEKRTGREMIFAMPESCPA 413

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S VVR          AA+RC   ++C A+Q E L HFVSRDA NIEGLG   +     
Sbjct: 414 CDSPVVRLEGE------AAYRCQN-ISCPARQREALFHFVSRDAMNIEGLGPAIIVQLLD 466

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   A ++ L+  Q       EN+   G  S  NL  +I   +   L   IF+
Sbjct: 467 K----GLIDDAAGLYDLRHEQL------ENLERMGKKSADNLIKAIEASKTRGLAPLIFA 516

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG +  R LA+ Y S +   +   + +            VP +G I+A +I  F+
Sbjct: 517 LGIRNVGIKAGRVLAQKYGSMEKLQEAGEDEL----------CEVPDIGGIMAASITSFF 566

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           ++  N   +  L ++    +    +  S     + +V TGTL+   R + +E +   G  
Sbjct: 567 RDRANRDFIRRL-QKAGVRMTDSRQASSRLFAGQSIVVTGTLRSWDRREIEELIETNGGK 625

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            SA +S+KT  ++ G+NPGSK +KAQ LGV + +
Sbjct: 626 ASASVSKKTSFVLCGENPGSKADKAQALGVPVYS 659


>gi|255691906|ref|ZP_05415581.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565]
 gi|260622459|gb|EEX45330.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565]
          Length = 666

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/709 (32%), Positives = 358/709 (50%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +  +  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P 
Sbjct: 2   DIKGRIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEEAHPEY---KDENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++ E++  F  R+ +              E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEEEVTDFYERVRKALN----EDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F ALN E        +ANPRNAASG L+  N + +  R L+ +++ L     +   G
Sbjct: 175 WEVFEALNREKEVREEPLFANPRNAASGTLKLQNSSVVASRKLDAYLYYL-LGENLPCDG 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ+    GF +++ +R+  T   +  + N     R  LP   DG+V KV+    QK
Sbjct: 234 HYENLQEAAKWGFKISDLMRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQK 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+L
Sbjct: 294 NLGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432
           HN D I+GL           D+ +GD V V++ GE+IPK+  + V+ R     +   F +
Sbjct: 354 HNADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDVDARSFMVGEKVRFIT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++VR          AAH C    AC  Q   +++HF+SR A +I+GLG + +D
Sbjct: 403 TCPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMDIDGLGPETVD 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F++       I   AD++ L          I+ +   G+ S  N+   I + + +  ER
Sbjct: 457 MFYR----LGLIHNTADLYKLT------IDDIKGLERMGEKSAENIVTGIAQSKTVPFER 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIR VG  +A+ +AK + +     +           D   L+ +  +G+ IAQ+I
Sbjct: 507 VIFALGIRFVGETVAKKIAKSFENIDELKRA----------DLERLVSIDEIGEKIAQSI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYV 670
           + ++ N  N   V  L +         E       ++  + +V +G      R + +E +
Sbjct: 557 LTYFANEANCELVNRLKEAGLQFYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKELI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ GDN G +KLEKAQ+LG+ I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAQKLGITILSEDEFLKLI 665


>gi|260175035|ref|ZP_05761447.1| DNA ligase [Bacteroides sp. D2]
 gi|315923266|ref|ZP_07919506.1| DNA ligase [Bacteroides sp. D2]
 gi|313697141|gb|EFS33976.1| DNA ligase [Bacteroides sp. D2]
          Length = 666

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/710 (32%), Positives = 365/710 (51%), Gaps = 53/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKALN----EDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  LN E  A     +ANPRNAASG L+  N + +  R L+ +++ L     +   G
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDG 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK
Sbjct: 234 HYENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQK 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+L
Sbjct: 294 NLGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432
           HN D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F  
Sbjct: 354 HNADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIV 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D
Sbjct: 403 NCPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVD 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F++       I+  AD++ L         ++      G+ S  N+   I + + +  ER
Sbjct: 457 MFYRLR----LIKNTADLYKLTADDIKGLDRM------GEKSAENIITGIAQSKTVPFER 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I
Sbjct: 507 VIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEY 669
           + ++ N  N   V A LKE    + R E+++S    ++  + +V +G      R + +E 
Sbjct: 557 LAYFANESNRELV-AKLKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEYKEL 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 616 IEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|120403104|ref|YP_952933.1| NAD-dependent DNA ligase LigA [Mycobacterium vanbaalenii PYR-1]
 gi|166216216|sp|A1T6X7|DNLJ_MYCVP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119955922|gb|ABM12927.1| DNA ligase, NAD-dependent [Mycobacterium vanbaalenii PYR-1]
          Length = 707

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/741 (30%), Positives = 354/741 (47%), Gaps = 54/741 (7%)

Query: 1   MKKRQLIPIEALSIEQ--------ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALK 52
           M  +     EA+  EQ         R++   L  E+  H   YY    PII D+E+DA+ 
Sbjct: 1   MSSKATQDPEAVLAEQSDDATEAGLRRQWQELADEVRDHQFRYYVRDAPIITDAEFDAML 60

Query: 53  RRCDAIAHAFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111
           RR +A+  A P+L     P+ P   +GG           H    LSL+ ++  ++L  + 
Sbjct: 61  RRLEALEEAHPEL---RTPDSPTQLVGGAGFATDFTAAEHLERMLSLDNVFTPDELAAWA 117

Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171
            RI             +  E KIDG  +++ Y  G+    A RGDG +GEDV+   R I 
Sbjct: 118 ARIRTEIGA----DAQYLCELKIDGVALSLVYRDGRLERGATRGDGRTGEDVTLNARTIE 173

Query: 172 TIPRVLSL----NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL 227
            +P  L+      +P ++EVRGEV+    DF  LN  ++A G+ P+ANPRN+A+G LR+ 
Sbjct: 174 DVPEKLTGTEEFPLPSVLEVRGEVFFRIADFEDLNAGLVAEGKPPFANPRNSAAGSLRQK 233

Query: 228 NPTDITRY-LNFFVHGLGKTSE---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS 283
           NP    R  L    HGLG   +      +  ++  + ++  G PV+    Q      +  
Sbjct: 234 NPAVTARRRLRMICHGLGHIEDAAGFPFRTLHDAYRALQAWGLPVSPHTAQVTGLDAVTE 293

Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343
                   R  + ++IDG+V KVDE +LQ++LG  +R+PRW +++K+  ++A T+LLDI 
Sbjct: 294 RIAYWGEHRHDVEHEIDGVVVKVDEVALQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIR 353

Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403
           + +GRTG +TP A +EPV I G+ +  ATLHN   +K            + + +GD V++
Sbjct: 354 VNVGRTGRVTPFAYMEPVKIAGSTVGLATLHNGSEVKR-----------KGVLIGDTVVI 402

Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
           ++AG+VIP+V+  +V+ R    + F  P+ CP C + +         +  A  RC     
Sbjct: 403 RKAGDVIPEVLGPVVDLRDGSEREFVMPTHCPECGTEL-----APAKEGDADIRCPNSRT 457

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523
           C AQ  ER+ H   R AF+IEGLG +      +    A  I    D+FTL       T  
Sbjct: 458 CPAQLRERVFHVAGRGAFDIEGLGYEAAIALLQ----ARVITDEGDLFTLTADDLLRTDL 513

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
                G    +   L  ++ K +   L R + +L IRHVG   AR+LA  + S       
Sbjct: 514 FTTKAGELSANGKRLLTNLGKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLDAIVAA 573

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
               +A           V  VG  IA A+ +++    +   V+             + ++
Sbjct: 574 SEEELAA----------VEGVGPTIAAAVTDWFTVDWHRTIVDKWRAAGVRMADERDASI 623

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              ++   +V TG+L    R +A+E +   G   +  +S+KT  ++ GD+PGSK +KA +
Sbjct: 624 ERTLDGLSIVVTGSLTGYSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDSPGSKYDKAIE 683

Query: 704 LGVKIMNEEQFLFLLQQYNTT 724
           LGV +++E+ F  LL+    T
Sbjct: 684 LGVPVLDEDGFRRLLENGPDT 704


>gi|227543584|ref|ZP_03973633.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A]
 gi|300909387|ref|ZP_07126848.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112]
 gi|227186424|gb|EEI66495.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A]
 gi|300893252|gb|EFK86611.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112]
          Length = 680

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/725 (33%), Positives = 386/725 (53%), Gaps = 50/725 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M ++Q  P++ L++++A+ E+  L  +++     YY+   P + D  YD   +R   +  
Sbjct: 1   MSQKQ-TPVKELTLQEAQDEIKPLRAKLTEWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L      + P  ++GG     L KV H IP LS+  +++IE+L  F  R      +
Sbjct: 60  QFPQLL---SADSPTQRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQRQQE--NR 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             +    + LE KIDG  +++ YE GK V  + RG+G  GEDV+A +R I ++P  L   
Sbjct: 115 DVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTANVRTIKSVPAELPE- 173

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            P  IEVRGE Y+ K  F  LN +  A G   +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 174 -PLSIEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELDTF 232

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ + +  ++  K Q E L +MR LGF VN   R  +    I  Y  E  + R  L Y I
Sbjct: 233 IYYVPEYQKLGVKTQAEALDRMRELGFNVNLNNRVVHNREEIEKYIEEYTAQRDKLTYGI 292

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++   +  LG   + PRW I++KF  ++ +T + DI   +GRTG +TP A ++
Sbjct: 293 DGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAVMD 352

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY++            +DIR+GD V + +AG++IP++  + + 
Sbjct: 353 PVQLAGTTVSRASLHNPDYLR-----------EKDIRIGDTVYLHKAGDIIPEISKVDLT 401

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D+  +  P+ CP+C S +V            A RC   + C AQ  E L HF SR+
Sbjct: 402 KRPADSVEYEIPTKCPVCSSELVHLDGE------VALRCINPM-CPAQIKEGLAHFASRN 454

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +  E     I   A ++ L   Q  +  K      FG+ S  NL 
Sbjct: 455 AMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLTLDK------FGEKSTANLL 504

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            SI+  RN S+ER +F LGIRHVGA+ AR + +++    +  +  ++ I+          
Sbjct: 505 TSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFGDLDSLMKANDDEISA--------- 555

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTG 656
            +  +G  I ++IV ++ N + +  ++ L +          R   N  SE   +++V TG
Sbjct: 556 -ISGIGPTIGESIVTYFANQQVVKLIDELREVGVNFAYLGSRSNANPDSEWNGRRVVLTG 614

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L ++ R +A+ ++   GA V+  +S+KTDI+I G + GSKL KAQ LG+ + NE+QF  
Sbjct: 615 KLTEMTRGEAKLWLENHGAKVTGSVSKKTDIVIAGADAGSKLTKAQDLGIDVWNEQQFSQ 674

Query: 717 LLQQY 721
            +++ 
Sbjct: 675 AMKEE 679


>gi|148652285|ref|YP_001279378.1| DNA ligase [Psychrobacter sp. PRwf-1]
 gi|190359276|sp|A5WCN7|DNLJ_PSYWF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148571369|gb|ABQ93428.1| DNA ligase, NAD-dependent [Psychrobacter sp. PRwf-1]
          Length = 686

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/710 (34%), Positives = 381/710 (53%), Gaps = 45/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            ++   ++ +L  ++  H++ YY   +P I D+EYD L+     +   +P+L +   P+ 
Sbjct: 14  AQEVIAKMRTLIAQVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEERYPELTQ---PDS 70

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G     S  +V H I  LSL  I+N +DL++F+ R+       D N   + +E K
Sbjct: 71  PTASVGDNPLPSFSQVQHDIAMLSLGNIFNYQDLQEFMRRVNDRLSDADRNP-EYEIEMK 129

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVY 192
           +DG  ++++Y  G+FV    RGDG  GED++  ++ I  IP V+      +++EVRGEV 
Sbjct: 130 LDGLAVSLKYHNGQFVRGVTRGDGQMGEDITQNVKTINNIPLVIEAAQDIDVLEVRGEVL 189

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K  F  LN      G K +ANPRNAA+G LR+L+P     R L F+ + + +      
Sbjct: 190 MPKAGFKRLNRLAQENGDKTFANPRNAAAGSLRQLDPAVAASRPLAFYAYSVNQGLPEAI 249

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   L  ++ LGF V++   +  T   +  YY  M   R+ L ++IDG+V KVD+ +L
Sbjct: 250 TLQSAALTWLKQLGFTVSD-FERVKTAQQVQDYYESMIQKRADLAFEIDGMVIKVDDLTL 308

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q QLG  +R PRW  ++KF  +   T L  I+ Q+GRTG LTPV +LEPV +GG  ++N 
Sbjct: 309 QSQLGALSREPRWATAYKFPAETVMTTLNSIEWQVGRTGQLTPVGKLEPVQVGGVTVSNV 368

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   I+ L           D+R GD V V RAG+VIPKV  +  + R       + P
Sbjct: 369 TLHNFGEIQRL-----------DVRAGDTVSVHRAGDVIPKVTRVWHDLRPEGTSAVTLP 417

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S VV           A  RCTG L C AQQ E L HFVSR A +I+GLG++ L
Sbjct: 418 THCPVCDSPVVLPEGE------ALARCTGELFCPAQQQEALIHFVSRKAMDIDGLGERWL 471

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             FF+       ++  ADI+ L         ++  +   G+ SV+N+  +I + +  +L 
Sbjct: 472 ISFFEH----GIVKTVADIYHLNEH----ADELVTLEKLGEKSVSNMLRAIEESKKTTLA 523

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIR VG   A++LA+Y+        ++  ++  + D   +   VP VG I A+ 
Sbjct: 524 RFIYALGIRGVGETTAQNLAQYFG-------DLPELMGASIDALEA---VPDVGHITAEL 573

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL--QKIQRHKAQE 668
           I  F++   NI  + AL +         ++ + +  +E +  V TGTL    + R  A+ 
Sbjct: 574 IYNFFRAEHNIEVINALQQAGVYWDKVEQQALDNLPLEGQTWVITGTLVASGMSRDDAKA 633

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++  LGA VS  +S KT  ++ G+  GSKL KAQ LGV+++ E++FL ++
Sbjct: 634 HLQALGAKVSGSVSAKTSALLAGEKAGSKLTKAQSLGVRVVLEDEFLKMI 683


>gi|291278945|ref|YP_003495780.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1]
 gi|290753647|dbj|BAI80024.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1]
          Length = 663

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/706 (34%), Positives = 389/706 (55%), Gaps = 54/706 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   KE   L  EI+YHD  YY  + P+I D EYD L +R   I   +P++     P  P
Sbjct: 3   ESILKEYQKLVDEINYHDYRYYVLNDPVISDYEYDQLYKRLKEIESKYPEII---SPYSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G     +L  V H +  LSL+  +N  +L+ F  R+ +  +        F +EPKI
Sbjct: 60  TQRVGYAPVSNLKTVKHEVKMLSLDNTYNEGELKDFYNRVLKNLESVP----SFVVEPKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ YE G     A RGDG +GEDV+  ++ I +IP  L + +   + VRGEV++ 
Sbjct: 116 DGAAVSLTYEDGILQIGATRGDGVTGEDVTHNVKTIKSIP--LKIAVKGKLVVRGEVFLP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           K++F  +NDE +  G +P+ANPRNAA+G L+ L+P     R L+ F++ +          
Sbjct: 174 KSEFERINDERVKNGLEPFANPRNAAAGTLKLLDPRIAAQRNLDIFIYSVDI--GRKHDT 231

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ L  ++ LGF VN  +++  +F  I+S+   +  +R  L Y+IDG V KV+E+S Q+
Sbjct: 232 HFDDLNYLKGLGFKVNPLIKKVESFEDIISHIENLGKMRDELDYEIDGAVIKVNEYSYQE 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLGE  + PRW ++ K+  +  +T L D+  Q+GRTGI+TPVA LEPV+I G+++  ATL
Sbjct: 292 QLGETIKYPRWAVAFKYPPELKTTVLKDVIFQVGRTGIITPVAVLEPVHISGSVVKRATL 351

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED I+ L           D+++GD V V+++GE+IPK++ ++  +R    +   FP  
Sbjct: 352 HNEDEIRRL-----------DVKIGDTVFVEKSGEIIPKIIKVVKEKRTGKEKEIVFPEK 400

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C   +VR  N        A+       CSA+    + HF SRDA +I+GLG+  ++ 
Sbjct: 401 CPVCNG-LVRKEN--------AYYVCLNPDCSAKLKASIIHFASRDAMDIKGLGEAIVER 451

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F         ++  ADI+TL         KI  + GFG  S  NL  SI   +N S +R 
Sbjct: 452 FVD----LGFLKSIADIYTL------DFEKIALLDGFGKKSAENLKKSIEDSKNRSFDRV 501

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIRHVG + AR L  ++ + +   +               L+ +  VG+IIA+++ 
Sbjct: 502 LYALGIRHVGIKTARILTNHFKNIEKLQKAT----------IEELVSIDEVGEIIAKSVY 551

Query: 614 EFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
              ++   +  +E      +  S+   ++N S +++  K V TGTL K  R+   E + +
Sbjct: 552 YTLRDENFLKLIERLKSYGLKFSMEDDKENKSEKLKGLKFVITGTLSKP-RNYYVELIEK 610

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           LG  VS+ +S+KTD +IVG++PGSK  KA  LGVK +NEE+F  L+
Sbjct: 611 LGGEVSSSVSKKTDYVIVGEDPGSKYNKAISLGVKTINEEEFYKLI 656


>gi|304415222|ref|ZP_07395930.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
           LSR1]
 gi|304282928|gb|EFL91383.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
           LSR1]
          Length = 674

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/714 (32%), Positives = 386/714 (54%), Gaps = 51/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   ++++     + +H+  Y+    P I D+EYD L      +   +P+L  +   + 
Sbjct: 1   MKSIIQQINQRRAILQHHEYQYHVLDNPEIPDAEYDRLMNELRELETQYPELICA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H  P LSL+ +++ +    F  R++      +   + F  EPK
Sbjct: 58  PTQRVGAVPLNIFEQVKHESPMLSLDNVFDEKSYLAFHQRLHNRLNLTE--ELAFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YEKG+ V AA RGDG  GE+++A +R I TIP  L   +IP+ IE+RGEV+
Sbjct: 116 LDGVAVSLLYEKGELVRAATRGDGSIGENITANVRTIRTIPLRLRGDDIPQQIEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPY-ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEI 249
           +    F   N+       K + +NPRNAA+G LR+L+P     R L+FF +G+G      
Sbjct: 176 MPLIGFAQFNEAARHKAEKKFFSNPRNAAAGSLRQLDPRITAKRPLDFFCYGMGLLKGGA 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +   + L + +  G PV+N +++      I+++Y  ++  R  L +DIDG+V KVD+ 
Sbjct: 236 LPQHHLQRLLQFKAWGLPVSNQIKRCIGSDQIIAFYRHLEQQRDRLDFDIDGVVIKVDDL 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  AR+PRW  + KF  ++  T++  ++ Q+GRTG +TPVARLEP+ + G +++
Sbjct: 296 SLQERLGFSARAPRWATAFKFPAQEKMTQVRQVEFQVGRTGAITPVARLEPIQLAGVMVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D IK L           D+ +GD V+++RAG+VIPK+V +++N R  +AQ  S
Sbjct: 356 NATLHNADEIKRL-----------DLHIGDTVIIRRAGDVIPKIVSVVMNARPLEAQEVS 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S + R      G+ +A  RC+G L C+AQ+ + LKHFVSR A +++G+G +
Sbjct: 405 FPLHCPVCGSDIER----LEGETIA--RCSGALLCTAQRKKMLKHFVSRRALDVDGMGDK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR-RNI 548
            ++     E     ++ PAD+F L   +     ++         S  NL  ++ KR + +
Sbjct: 459 IIEQLVTKE----YVKHPADLFHLTVEKLMGLNRMGA------KSAHNLIAALEKRNKRL 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
                      R VG   A +LA ++ +  +            + D  +L +V  VG ++
Sbjct: 509 XXXXXXXXXXXREVGETTAANLAAHFRTLSHLR----------SADVETLQQVADVGVVV 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRH 664
           A  ++ F     N   + AL   +            +  ++   +K +V TG+L  + R 
Sbjct: 559 ATHVINFLAQEHNQHVINALEAVIHWPEPEQIIAVAEESNNIFTSKTIVLTGSLNSLSRE 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            A++ +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+K++ E++ L LL
Sbjct: 619 NAKDRLVALGAKVSNSVSKKTDLVIAGEGAGSKLIKAQELGIKVITEDEMLRLL 672


>gi|29346304|ref|NP_809807.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568276|ref|ZP_04845687.1| DNA ligase [Bacteroides sp. 1_1_6]
 gi|81445157|sp|Q8A9C1|DNLJ_BACTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29338199|gb|AAO76001.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842349|gb|EES70429.1| DNA ligase [Bacteroides sp. 1_1_6]
          Length = 666

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/709 (31%), Positives = 355/709 (50%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEY---KDENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K D
Sbjct: 59  MRVGSDINKNFTQVAHKYPMLSLANTYSEGEVTDFYERVRKALN----EDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  LN E  A     +ANPRNAASG L+  N + +  R L+ +++ L     +   G
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDG 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK
Sbjct: 234 HYENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQK 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+ V + G ++  A+L
Sbjct: 294 NLGFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDAVQLSGTVVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432
           HN D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F +
Sbjct: 354 HNADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D
Sbjct: 403 NCPECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVD 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F++       I   AD++ L+        ++      G+ S  N+   I + + +  ER
Sbjct: 457 MFYR----LGLIHNTADLYELKADDIKGLDRM------GEKSAENIITGIEQSKTVPFER 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIR VG  +A+ +AK +       Q           D   LI +  +G+ IA++I
Sbjct: 507 VIFALGIRFVGETVAKKIAKSFGDIDELRQA----------DLEKLISIDEIGEKIARSI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYV 670
           + ++ N  N   V  L +         E       ++  + +V +G      R + ++ +
Sbjct: 557 LLYFSNESNRELVGRLKEAGLQLYRTEEDMSGYTDKLAGQSIVISGVFTHHSRDEYKDLI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ GDN G +KLEKA++LGV I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGVTILSEDEFLKLI 665


>gi|167631047|ref|YP_001681546.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1]
 gi|254781344|sp|B0TDL0|DNLJ_HELMI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167593787|gb|ABZ85535.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1]
          Length = 675

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/712 (34%), Positives = 384/712 (53%), Gaps = 50/712 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +   A + ++ L ++I  HD CYY    P I D+EYD L R    +  + P+L  +   +
Sbjct: 9   APADAAQRIAELREQIRRHDYCYYVLDAPEISDAEYDRLMRELLDLEQSHPELVTA---D 65

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG+   +   V+H +P LSL    + +DLR+F        +++ D  + + +EP
Sbjct: 66  SPSQRVGGQPLAAFRAVSHRVPLLSLANAVDDQDLREFDR----RARERADRPLTYVVEP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  + + YE+G+F+ AA RGDG  GED++  I+ +  +P  L  +I + +EVRGE Y
Sbjct: 122 KIDGLTVVLSYEEGRFIRAATRGDGLIGEDITENIKTVRAVPLRLKRDI-KSLEVRGEAY 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + K  F  LN+E    G   +ANPRNAA+G LR+L+P    +R L  + + +        
Sbjct: 181 LPKAAFARLNEEREEAGEAAFANPRNAAAGSLRQLDPKVTASRPLRAYFYNILHLEGADG 240

Query: 252 KG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            G Q E LQ +  LG PVN   R   T   ++ Y       R  LPY+IDG+V KV+E  
Sbjct: 241 VGEQVEALQMLEDLGLPVNPERRYCRTIDDVIDYCRYWTEHRHDLPYEIDGMVVKVNELD 300

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
               LGE A+SPR+ I+ KF  +QA TR+ DI +++GRTG++TP A LEPV + G  ++ 
Sbjct: 301 QYPLLGETAKSPRYAIAFKFPPEQAITRVRDITVKVGRTGVITPTAELEPVRLAGTTVSR 360

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED I+            RDI +GD V++++AG++IP+V+ ++  +R  + +PF  
Sbjct: 361 ATLHNEDIIR-----------ERDIHIGDYVVIQKAGDIIPEVLSVLKEKRTGEERPFFM 409

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S V R          AA RCT  LAC AQ  E L HF SRDA NIEGLG   
Sbjct: 410 PQTCPECHSPVSRLKGE------AAIRCT-SLACPAQAKEGLIHFASRDAMNIEGLGPAV 462

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  ++    A  +R PAD++ L   Q     ++      G  S  NL  +I   ++  L
Sbjct: 463 VNLLWE----AGLVRDPADLYDLTAEQVAPLERM------GKKSAANLIAAIENSKSRGL 512

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              IF+LGIR VG   A++LA+++ S     +     +   ++          +G  +A+
Sbjct: 513 AALIFALGIRLVGQTAAKTLARHFGSMDQLMKATTEELQAVSE----------IGPKMAE 562

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++  ++  P N   ++ L ++          +  V      K +V TGTL  + R +AQ 
Sbjct: 563 SLQRWFAVPANRQMIDRLAEKGLQMETEKAGDAGVPQTFAGKTVVLTGTLTTLDRREAQR 622

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + + GA V++ +S+KT ++I G+  GSKLEKA++L + I++E  FL L+ +
Sbjct: 623 LLEERGAKVASSVSKKTSLVIAGEAAGSKLEKAKELNIPILSEADFLQLIDR 674


>gi|325102906|ref|YP_004272560.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145]
 gi|324971754|gb|ADY50738.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145]
          Length = 670

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/712 (30%), Positives = 369/712 (51%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S+ + ++++ +L  E++ H+  YYQ + P I D E+D   +  + +    P   R    
Sbjct: 1   MSLFEIKEKIDALVTELNRHNYNYYQLAMPTISDYEFDQKLKELEKLEQENPAFIRI--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GGE+  +   VTH  P LSL   +N +DL  F  RI +       ++  +  E
Sbjct: 58  DSPTQKVGGEITKTFKTVTHKWPMLSLGNTYNEQDLVDFDQRIRKIIG----DNFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
            K DG  I++ YE G  + A  RGDG  G++V+  I+ I TIP  +    I    E+RGE
Sbjct: 114 LKFDGLSISLTYENGDLIRAVTRGDGTKGDEVTTNIKTIRTIPHRIKGEGILPSFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           V++ K  F  LN E I  G +P+ANPRN ASG ++  N  ++  R L+ F++ L    + 
Sbjct: 174 VFMHKAAFEKLNQERIENGEQPFANPRNFASGTVKMQNSAEVAKRPLDCFLYFL-YADKK 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                +E L  +   GF ++   +       +  +       R  L YDIDG+V KV+ +
Sbjct: 233 PFPTHWESLHAVEKWGFKISQESKLCKNLAEVFDFITYWDQERFKLSYDIDGIVIKVNSY 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q++LG  A+SPRW IS+KF   +  T L+++  Q+GRTG +TPVA L+PV + G  + 
Sbjct: 293 AQQEELGFTAKSPRWAISYKFKAAEVETELIEVTYQVGRTGAVTPVANLKPVLLAGTTVK 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + I+ L           D+  GD VLV++ GE+IPK++ + +++R  DAQ   
Sbjct: 353 RATLHNANEIERL-----------DLYEGDTVLVEKGGEIIPKIMGVNLDKRKSDAQKIH 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           + + CP C + +VR +        A H C     C  Q + +++HF+SR   NI+G+G +
Sbjct: 402 YITHCPECGTELVRKVGE------AVHYCPNDEGCRPQIIGKMQHFISRKVMNIDGIGDE 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++  +        IR  +DI+ L++ +      ++ +  FG+ SVTN+   I   + + 
Sbjct: 456 TIETLYSK----GFIRHISDIYNLKQDE----DSLKQMDRFGEKSVTNMLLGIENSKQMP 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            E+ +F LGIR+VG  +A+ LA ++ + QN               +  LI    +G+ IA
Sbjct: 508 FEKVLFGLGIRYVGETVAKKLALHFKNIQNLQHA----------SFEQLIEAEEIGERIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQ 667
           Q+I+E++ +  +I  +  L+          ++ +  S  +  +  + +G  +   R + +
Sbjct: 558 QSILEYFSDETHINEINKLITYGLQFEIEEKEVILQSESLLGQTFLISGVFENHSREELK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + +   G  + + +S K + ++ GDN G SKLEKA +L + I++E+    LL
Sbjct: 618 KIIEDNGGKMLSSISAKLNYLVAGDNMGPSKLEKANKLNIPIISEQDLFNLL 669


>gi|296116447|ref|ZP_06835061.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977040|gb|EFG83804.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769]
          Length = 709

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/711 (38%), Positives = 405/711 (56%), Gaps = 33/711 (4%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
             +S  QA  EL+ L   I+  D  Y+Q   PI+ D+ YDAL+RR   +  A P   R +
Sbjct: 22  PDMSASQAASELALLADVIAQLDRAYHQDDAPIVTDAVYDALRRRNSELEQAHPRERRDD 81

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIF 127
            P+    ++G   + +  +  H  P LSL+ +++ E+   FI+R  RF    D     + 
Sbjct: 82  SPD---TRVGAAPSGAFRRHRHLTPMLSLDNVFSREEFEGFISRAARFLGLDDAQATQLD 138

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           F  EPKIDG  I++ YE   FV    RGDG  GEDV+A +R +  +P+ L    P++IE+
Sbjct: 139 FVAEPKIDGLSISLTYENRHFVRGTTRGDGTEGEDVTANLRTLRNMPQQLHGPAPDLIEI 198

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246
           RGEV+++K+DFL LN   +A G+KP+ANPRNAA+G LR+L+      R L+ F + +G  
Sbjct: 199 RGEVFLAKSDFLTLNAAQVAAGQKPFANPRNAAAGSLRQLDAEITRQRPLSLFAYAVGYC 258

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S   A      L+++   GF V+    +        ++   +   RS L YDIDG+VYK+
Sbjct: 259 SAPVADTHDLYLRQLGEWGFAVSPLCTRVANEAEAEAFMERIARERSALDYDIDGVVYKI 318

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +E +LQ++LG   R+PRW ++ KFA +QA TRL  IDIQ+GRTG LTPVA LEPVN+GG 
Sbjct: 319 NERALQERLGFAGRAPRWAVAWKFAAEQAITRLTKIDIQVGRTGALTPVAILEPVNVGGV 378

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++T A+LHNED I             +D++ GD V ++RAG+VIP+V+D+++  R     
Sbjct: 379 IVTRASLHNEDEIVR-----------KDVQEGDLVRIQRAGDVIPQVLDVVL-PRDHSPH 426

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF FP  CP+C +   R             RC+GGL C AQ +ERL HFVSRDAF+IEGL
Sbjct: 427 PFVFPHVCPVCHAHAERPEGE------VVWRCSGGLTCPAQLVERLIHFVSRDAFDIEGL 480

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +  F         +  PADIF L   ++    +     G+G +S  NL ++I  RR
Sbjct: 481 GDRTIAEFHAD----GLLGTPADIFHLPTHEEAIAVR----PGWGTLSARNLMNAIAARR 532

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            ISL RFI++LGIR +G   AR LA++Y SY N+ Q++       +D+ L L  +  +G 
Sbjct: 533 TISLSRFIYALGIRRIGINTARLLARHYGSYDNWHQQMLRATTVGSDERLELGSITGIGT 592

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            IA  +V F+    N   +E L   +  +I   E   + E+  K +VFTGTL  + R +A
Sbjct: 593 AIADELVAFFIEAHNRQTLEDLTHVLE-AITDEEMLAAGELSGKVIVFTGTLTTMSRPEA 651

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +    ++GA VS  +SRKTDI+++G+  GSK  KA +L +  ++E  +  L
Sbjct: 652 RAIAERMGARVSDSVSRKTDIVVLGEKAGSKARKAAELNLHTVDEAGWRSL 702


>gi|295107089|emb|CBL04632.1| DNA ligase, NAD-dependent [Gordonibacter pamelaeae 7-10-1-b]
          Length = 731

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/720 (32%), Positives = 368/720 (51%), Gaps = 57/720 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
              + +L +EI +H   YY    P I D  +D+L R    +  A P+L    DP+ P  +
Sbjct: 45  AARIEALRREIEHHTYLYYAQDAPEISDGAFDSLMRELRELEAAHPELV---DPSSPTQR 101

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +      V H+    SL+   ++E+L  +I R+   + +     +    E KIDG+
Sbjct: 102 VGGYVGEQFAPVRHARRMYSLDNAMDLEELDAWIERVTEAFGRM----VPVVCELKIDGS 157

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-------NIPEIIEVRGE 190
            I + YE G+ V AA RGDG +GEDV+A +R +  +P  L         +    +E+RGE
Sbjct: 158 SIALTYEDGRLVRAATRGDGTTGEDVTANMRTVKDVPLRLREAALGGLRDAAAPVELRGE 217

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           VY+ K+ F ALN   +A G++ +ANPRNAA+G LR+ +P     R L+ F++ +     +
Sbjct: 218 VYMPKSSFDALNAAAVANGKQAFANPRNAAAGSLRQKDPAITANRDLSTFIYAVADERAL 277

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +GQ+E+L  +R  GF VN  V    T   + ++       R  LPY+IDG+V KV+ F
Sbjct: 278 AVEGQWELLAWLREAGFHVNPDVELCETREAVHAFCERAIERREALPYEIDGVVVKVNAF 337

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ +G  AR+PRW ++ KF  ++ +T L DI +Q+GRTG LTPVA +EPV + G+ + 
Sbjct: 338 AQQESMGYTARAPRWAVAFKFPPEEKTTLLHDITVQVGRTGKLTPVAEMEPVVVAGSTVA 397

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNED ++            +D+RVGD V+V++AG+VIP+V+  ++  R  DA  + 
Sbjct: 398 RATLHNEDEVQR-----------KDVRVGDTVIVRKAGDVIPEVLGPVLALRPADAAVWR 446

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S V+R+            RC   + C AQ LERL H+ SR A +I+G+G++
Sbjct: 447 MPATCPSCGSPVIREEGE------VDFRCI-SIDCPAQALERLLHWASRGAMDIDGMGEE 499

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-----KIENILGFGDVSVTNLYDSINK 544
            +    +S      +   AD +TL   +          K    +  G      L  +I+ 
Sbjct: 500 IVSRLVESGR----LTDVADYYTLDEVELALLDMGRVNKDGEPIRLGSTVAKKLVAAIDG 555

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R     R +F LGIRHVG  IA  LA  Y S +   +     +A           +  V
Sbjct: 556 SRARPFSRALFGLGIRHVGKTIAELLAAAYPSIEALMEASEEDLAA----------LDGV 605

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTL--Q 659
           G  IA+++  F + P N   +E L K            ++ +   +E    V TG+L   
Sbjct: 606 GPKIARSVYLFLRTPDNAAVIERLRKRGVAMADEAADPDEQLPQTLEGLTFVLTGSLVES 665

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + R +A   +   GA VS  +S+KT  ++ G+  GSK +KA  LGV +++E   L +L+
Sbjct: 666 GMTRDEAGAALKARGAKVSGSVSKKTSYVVAGEAAGSKYDKAVTLGVPVLDEAALLRILE 725


>gi|295084199|emb|CBK65722.1| DNA ligase, NAD-dependent [Bacteroides xylanisolvens XB1A]
          Length = 666

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/710 (32%), Positives = 363/710 (51%), Gaps = 53/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKALN----EDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  LN E  A     +ANPRNAASG L+  N + +  R L+ +++ L     +   G
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDG 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK
Sbjct: 234 HYENLQEAAKWGFKISDLTRKCQTLEDVFEFINYWDVERKNLPVATDGIVLKVNSLRQQK 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+L
Sbjct: 294 NLGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432
           HN D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F  
Sbjct: 354 HNADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIV 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D
Sbjct: 403 NCPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVD 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F++       I   AD++ L         ++      G+ S  N+   I + + +  ER
Sbjct: 457 MFYR----LGLIENTADLYKLTADDIKGLDRM------GEKSAENIVTGIAQSKTVPFER 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I
Sbjct: 507 VIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEY 669
           + ++ N  N   V  L KE    + R E+++S    ++  + +V +G      R + +E 
Sbjct: 557 LAYFANESNRELVNRL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKEL 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 616 IEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|255327262|ref|ZP_05368336.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296]
 gi|255295542|gb|EET74885.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296]
          Length = 735

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/753 (32%), Positives = 378/753 (50%), Gaps = 59/753 (7%)

Query: 3   KRQLIPIEALSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
            +Q  P E  +   E  R E + L  +I      YY    P + D+EYD L RR + I  
Sbjct: 7   TQQTAPAENTAEITEALRAEYAELTDKIRAARRAYYNEDAPFLSDAEYDKLYRRLEIIEA 66

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P +  +   + P  ++GGE   +   VTH     SLE +++ E+LR ++T+     + 
Sbjct: 67  EHPLIIAN---DSPTQEVGGEAIEAFAPVTHLQRMYSLEDVFSFEELRAWLTKTEESTRN 123

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
              ++  +  E KIDG  + + Y  G  V AA RGDG +GEDV+  +R I +IP+ L   
Sbjct: 124 LTGSAPQWLTELKIDGLAVNLLYRNGTLVRAATRGDGTTGEDVTHNVRTIASIPQQLTGE 183

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           N PE IE+RGEV+IS  DF  LN+ MIA G+ P+ANPRNAA+G LR+ +     +R L+ 
Sbjct: 184 NHPEEIEIRGEVFISSADFEKLNESMIAAGKNPFANPRNAAAGSLRQKDAAITASRPLSM 243

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           +VHG+G  + +    QYE    +   G PV+     A     +  + N+    R +L ++
Sbjct: 244 YVHGIGSRTGLDIATQYETYDLLASWGLPVSPYSEIAANTEAVFDFINKYGEQRHSLVHE 303

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV++F+ Q QLG  +R PRW +++K+  ++  T+LLDI + +GRTG +TP   +
Sbjct: 304 IDGIVIKVNDFATQAQLGYTSRVPRWAVAYKYPPEEVHTKLLDIRVDVGRTGRVTPYGVM 363

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ +  ATLHN+D +K            + + +GD V++++AG+VIP++V  +V
Sbjct: 364 EPVFVSGSTVERATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEIVAPVV 412

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R    + F  PS CP C S +         +     RCT   +C AQ  ER+ +  SR
Sbjct: 413 ALRDGTEREFVMPSECPSCGSPL-----APGKEGDVDLRCTNPRSCPAQLTERVYYAASR 467

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTL-------------QRRQQTSTTKI 524
            AF+IE LG +          P    +   A +F+L             ++ +   T K+
Sbjct: 468 GAFDIEALGFEAAKALTSPATPHTPPLTTEAHLFSLNIEDLREVTIEREKKVKGVGTGKM 527

Query: 525 ENILGFG------------DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           E +  F               +  NL+  + K +   L R + +L IRHVG   AR+LA 
Sbjct: 528 ERVPYFYTKPTKARPEPKPTKNTLNLFAELEKAKQQPLWRVLVALSIRHVGPTAARALAA 587

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            + S Q   +     +A           V  VG  IA +I+E++    +   V++     
Sbjct: 588 EFGSMQAIREADRERLAA----------VDGVGTTIADSIIEWFAEDWHAEVVDSWAAAG 637

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                  +++V   +E   +V TGTL    R  A+E +   G   S  +S++T  ++ G 
Sbjct: 638 VRMEDTRDESVERTLEGLTVVVTGTLNGYTRDGAKEAIISRGGKASGSVSKRTHFVVAGA 697

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           N GSKL+KAQQLG+K+++EE F  LL+     +
Sbjct: 698 NAGSKLDKAQQLGLKVLDEEGFTALLEGGPEAV 730


>gi|239638039|ref|ZP_04678998.1| DNA ligase, NAD-dependent [Staphylococcus warneri L37603]
 gi|239596322|gb|EEQ78860.1| DNA ligase, NAD-dependent [Staphylococcus warneri L37603]
          Length = 668

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/706 (33%), Positives = 376/706 (53%), Gaps = 53/706 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + + +  ++ L   ++ +   YY    P + DSEYD L      I    P+    + P+ 
Sbjct: 1   MSELQNRVNDLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIHIESEHPEF---KTPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  L +  P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A 
Sbjct: 171 PRKSFMNLNEEKEKNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSIFLYSINDFTDFEAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   L ++  LGF  N+   + +   G++ Y  +  + R  LPYDIDG+V KV++   Q
Sbjct: 231 TQSGALDELDELGFKTNHERERVSDIDGVLKYIEKWTAEREMLPYDIDGIVIKVNDLEQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVRSIIDRRPEDAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+        ++ +        V NL ++I + ++ SLE 
Sbjct: 453 QLYEND----LIKDVADIFYLEEEDLLPLERMGS------KKVENLLEAIKQAKSQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + +R LA+ Y +           +          I +  +G  +AQ++
Sbjct: 503 LLFGLGIRHLGVKASRVLAEKYETMDRLLTVTEEEL----------IAIHDIGGKLAQSV 552

Query: 613 VEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +    +  +      +   E     +   K +V TG L+++ R++A +
Sbjct: 553 VTYLENDDIRALIQKLKDKDVNMTYKGVKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASQ 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  EE+F
Sbjct: 613 WLQMQGAKVTNSVNKSTDILIAGADAGSKLTKAEKFGTEIWTEEEF 658


>gi|209527955|ref|ZP_03276440.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328]
 gi|209491614|gb|EDZ91984.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328]
          Length = 680

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/698 (30%), Positives = 346/698 (49%), Gaps = 49/698 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  ++L  L   +      YY    P + D  YD L R    +   +P+L     P+ P 
Sbjct: 12  EISQKLEQLRLTVQRASYAYYVLDAPTMEDGVYDRLYRELQELETQYPELI---SPDSPT 68

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +       V H+I   SLE  +N+ +L+ +  +  RF          +  E KID
Sbjct: 69  QRVGEKPATQFESVRHNISLYSLENAFNMAELQAWDEKWRRFLGNWAAEDNNYICELKID 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           G+ I + Y  G  V  A RGDG +GED++  I+ I +IP  L L N P ++EVRGE ++ 
Sbjct: 129 GSAIALTYHDGILVRGATRGDGVTGEDITQNIKTIRSIPLKLHLDNPPPVVEVRGEAFLY 188

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  +N E    G   +ANPRNAA+G LR+L+   +  R+L+FF + L   S      
Sbjct: 189 NRIFAEINQERQKNGEPLFANPRNAAAGTLRQLDSRIVAARHLDFFAYTLHLDSPNLHD- 247

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ L+ +  +GF VN   +   +   +  Y+N  ++ R  LPY  DG+V K++  SLQK
Sbjct: 248 HWDCLELLPKMGFKVNPNRQLCQSLLEVQQYFNTWETQRRELPYMTDGVVVKLNSLSLQK 307

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLGE  + PRW I+ K+  ++  T+++ +  Q+GRTG LTPVA LEP+ + G  +  ATL
Sbjct: 308 QLGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTVKRATL 367

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D +  L           D+ +GD V+V++AGE+IP+VV ++ + R   A+  + P+ 
Sbjct: 368 HNQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMPTH 416

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   VV+          A  RC    +C A     + H+  R A +I G+G++ +  
Sbjct: 417 CPECGETVVKTPPE------AVTRCINS-SCPAIVRGSIIHWCGRRALDINGIGEKLVQQ 469

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +++     +R  AD++ L   Q  +  +          S   + ++I   +     R 
Sbjct: 470 LVETQ----LVRSVADLYHLNMDQLVALERQGQ------KSAQKILEAIAASKKQPWHRV 519

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LGIR+VG   A  LA+ + S Q+ A   +  I            V  +G  IA ++ 
Sbjct: 520 LYGLGIRYVGEVNAELLAQNFPSCQSLAAASSAQIEG----------VYGIGAEIATSVY 569

Query: 614 EFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +++QNP NI   + L +        PS        +     K  V TGTL  + R +A+ 
Sbjct: 570 QWFQNPANISLCDRLEQSGLQLASVPSTALKSTPQAQPFAGKTFVLTGTLPTLTREEAKS 629

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
            + + G  V+  +++K D +++GD PGSKL KAQ LG+
Sbjct: 630 IIEKAGGKVTNSVTQKVDYLLLGDKPGSKLAKAQNLGI 667


>gi|148243508|ref|YP_001228665.1| NAD-dependent DNA ligase LigA [Synechococcus sp. RCC307]
 gi|166216253|sp|A5GWQ3|DNLJ_SYNR3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147851818|emb|CAK29312.1| NAD-dependent DNA ligase [Synechococcus sp. RCC307]
          Length = 675

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/711 (30%), Positives = 354/711 (49%), Gaps = 48/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            Q +   + L Q ++     YY    P   D+ YD L R    +    PDL      + P
Sbjct: 5   AQQQLRAAELRQLLNRAAHAYYVLDAPEFEDAVYDRLYRELLDLEQQHPDLL---SADSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG        V H I  LSL+  +N E+L+ +  R+ R  +   +    +  E KI
Sbjct: 62  TQRVGGPPAEGFSSVEHRIGMLSLDNAFNAEELQAWDARLGRQLEDNPERQREYVCELKI 121

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + Y  G  V AA RGDG  GE+++A +R I  +P  L L   P  +EVRGE +I
Sbjct: 122 DGNALALSYADGVLVRAATRGDGSRGEEITANVRTIQAVPLRLQLKQPPAWVEVRGEAFI 181

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-KTSEIFA 251
             + F A+N E    G   +ANPRNA +G LR+L+P  +  R L+FF + +     E+  
Sbjct: 182 PDDTFEAINAERQQRGEALFANPRNACAGTLRQLDPKAVAARRLDFFAYTVHLPADEMGP 241

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K Q++ LQ +   GF VN    + +   G+V++Y+  +  R  LPY  DG+V K+D    
Sbjct: 242 KSQWDALQWLETAGFRVNPHRERTSGADGVVAFYDRWEEQRHQLPYATDGVVVKLDALER 301

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+  G   ++PRW I+ K+A ++A +RLL +  Q+GRTG++TPVA  E V + G  ++ A
Sbjct: 302 QQLAGFTQKAPRWAIALKYAAEEAPSRLLRLVAQVGRTGVVTPVAEFEAVPLAGTSVSRA 361

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D ++ L           D+  GD ++V++AGE+IP+V+ ++   R   A+    P
Sbjct: 362 TLHNADRLEEL-----------DLHSGDTIVVRKAGEIIPEVLRVLPELRPEGAEQLELP 410

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C S +VR+         AA RC    +C A     L+H+VSR A +++GLG + +
Sbjct: 411 SHCPECGSLLVRESGE------AATRCVNS-SCPAILRGALRHWVSRQAMDVDGLGGKLI 463

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           +R  AD++ L      S  ++      G+ S +NL +++   R     
Sbjct: 464 EQLVDR----GLVRSIADLYRLDAALLASLERM------GEQSASNLIEALAASRQRPWH 513

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +++LGI H+G+  A++LA  + S++         +            +  +G  I+Q+
Sbjct: 514 RLLYALGIHHIGSVNAKTLAAAFPSWEALQSASEEAL----------NELYGIGPEISQS 563

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQ 667
           + ++     N   +  L     P         S      +  + LV TGTL  + R +AQ
Sbjct: 564 MQQWCSTEANQSLMAELAALELPLASDDSSAESAGAIGALTGQTLVLTGTLPNLSRLEAQ 623

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +   G  V+  +S+KT+ ++ G   GSKL+KA++LGV +++E +   LL
Sbjct: 624 ALIEAAGGKVTGSVSKKTNYVVAGSEAGSKLQKAEKLGVAVIDEAELKALL 674


>gi|290967938|ref|ZP_06559488.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L]
 gi|290782077|gb|EFD94655.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L]
          Length = 668

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/722 (33%), Positives = 389/722 (53%), Gaps = 55/722 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M KR+         EQ +  L+ ++++++     YY    P + D EYD L R  + +  
Sbjct: 1   MTKRE---------EQEKVRLAEIKKQLAELSYQYYTLDAPTVSDYEYDMLYRELETLEK 51

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +P       P+ P  +IG +++ +  K TH  P LSL  +++ E++R+F  R+ +    
Sbjct: 52  KYPQWV---TPDSPTQRIGSKISGTFAKYTHDRPMLSLGDVFSDEEVREFDARVRQELP- 107

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                + + +E KIDG  + + YEKG+FV    RGDGH GED++  +R I T+P  +S +
Sbjct: 108 --GERVAYVVELKIDGLAVNLIYEKGRFVRGVTRGDGHVGEDITHNVRTIRTVPLHIS-D 164

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
           + + +E+RGEVY+    F ALN++  A   +P+ANPRNAA+G LR+ +P     R L+FF
Sbjct: 165 LSDHVEIRGEVYMPIPAFRALNEQRSADELEPFANPRNAAAGSLRQQDPQVAAERKLSFF 224

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            + LG TS+   + Q  +LQ +R L FPVN   R       +++Y +   + R TL Y  
Sbjct: 225 AYALGGTSDWRPESQEALLQTLRNLHFPVNREYRTFTDIQDVIAYIHTWDTRRDTLSYAT 284

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+ F+ Q+ LG   + PRW I++KF  +QA T++L I + +GRTG+LTP A L+
Sbjct: 285 DGMVIKVNSFAQQQMLGNTVKIPRWAIAYKFPPEQARTKVLQIRVGVGRTGVLTPTAELQ 344

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  + +ATLHNE+YI+            +DIR+GD VL+++AGE+IP+VV  ++ 
Sbjct: 345 PVRLAGTTVKSATLHNEEYIRS-----------KDIRIGDTVLIQKAGEIIPEVVRPVME 393

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R      F  P+ CP C  +V R+         AA RC    AC A   E++ HFVSR 
Sbjct: 394 ARTGREVVFVMPTQCPSCGGQVQREAGE------AAVRCVNP-ACPAMVAEQIAHFVSRP 446

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NIEGLG   +            I   AD+F L +       +I  + GFG+ S  NL 
Sbjct: 447 AMNIEGLGTAIVKQLIDH----GLIHDVADLFLLHK------EEILPLEGFGEKSADNLL 496

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            SI   +   L R +F+LGIR VGA+  R LA+ + S Q  A            D  +L+
Sbjct: 497 QSIAAAKEAGLGRLLFALGIRFVGAKAGRILAETFGSMQALAAA----------DIATLM 546

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            V  +G  IA+++  ++ + + +  ++ L         +  + +++  + + +V TG LQ
Sbjct: 547 AVETIGPRIAESVAAYFADSQKVRVIQKLAAAGVGMTEKKRQLINTSFDGEIVVLTGKLQ 606

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +A+  ++  G   +A +++KT +++ G +PGSK +KA+ LG   + EE+F   L 
Sbjct: 607 HFSRKEAEAAISARGGSCTATVTKKTTLVVCGADPGSKYDKAKALGTPTIGEEEFCDRLN 666

Query: 720 QY 721
           + 
Sbjct: 667 RE 668


>gi|167752039|ref|ZP_02424166.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216]
 gi|167660280|gb|EDS04410.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216]
          Length = 712

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/710 (31%), Positives = 359/710 (50%), Gaps = 49/710 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R+++  L + + YH+  YY  + P I D E+D L R    +  A P+ A   DPN P  
Sbjct: 12  IREKIEELRRTLDYHNHKYYVENSPEISDREFDVLMRELQELEAAHPEYA---DPNSPTA 68

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++      V H  P LSL   +++++L +FI RI +   + +     F  E K DG
Sbjct: 69  RVGSDLTTEFQSVEHRFPMLSLGNTYSLDELHEFIGRIEKELGQTE-----FVCELKFDG 123

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
           T I++ YE G  + A  RGDG  G+DV+A IR I TIP  L   + P+  E+RGEV +  
Sbjct: 124 TAISLTYEHGALLRAVTRGDGTRGDDVTANIRTIRTIPLHLQGGDYPDFFEIRGEVLMPY 183

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E    G    ANPRNAA+G L++ +   +  R L+  ++ L    ++     
Sbjct: 184 ASFDRLNREREENGEPLLANPRNAAAGTLKQQSSAVVAQRGLDCTLYQLA-GDDLPCTTH 242

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E ++K    GF V++ +R   +   I  Y       R  LP+  DG+V KV+ ++L+++
Sbjct: 243 WECMRKASEWGFNVSDKMRICRSQAEIDDYIAFWDEERRKLPFATDGVVIKVNSYTLRRE 302

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A++PRW ++ KF  +QA TRL  +D Q+GRTG +TPVA L+PV + G  +  ATLH
Sbjct: 303 LGFTAKAPRWAVAFKFKAEQALTRLESVDFQVGRTGAITPVANLDPVQLAGTTVKRATLH 362

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N + I  L           DIRVGD V V++ GE+IPK+  + +  R  D++PF + + C
Sbjct: 363 NAEQIALL-----------DIRVGDMVYVEKGGEIIPKITGVDLAARPADSRPFQYITRC 411

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +V+          + H C     C  Q L R+ HF+ R A +IEGLG++ ++  
Sbjct: 412 PECGTPLVKYEGE------SKHYCPNQSHCRPQILGRIIHFIRRKAMDIEGLGEETVELL 465

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F++      +   AD++ L+  Q             G+ S  N+  SI     +  +R +
Sbjct: 466 FEN----GLLHDIADLYDLRAEQLACL------PRLGEKSAENIIRSIRGSVEVPFQRVL 515

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A+ LA ++ +           +          I    VG  IA AI++
Sbjct: 516 FALGIRFVGETTAKYLAAHFRTLDAVMHATREEL----------IEADEVGGKIADAIID 565

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++ +  N+  +E L K    +   H+   S  +  K  V TG      R + +E +   G
Sbjct: 566 YFADAENLRIIERLRKAGLQTEAAHKALESESLAGKNFVITGRFSGHSRDELKELIEAHG 625

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
               A +S   D ++ G+  G +KL+KA +LGV++++EE+ L ++    T
Sbjct: 626 GKNLAAVSANVDFLVAGEKIGPAKLQKATKLGVRLISEEELLAMIASGGT 675


>gi|116617684|ref|YP_818055.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272115|sp|Q03YP0|DNLJ_LEUMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116096531|gb|ABJ61682.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 680

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/715 (33%), Positives = 376/715 (52%), Gaps = 51/715 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             PIE L+ + A++E + L++++  +   YY+   P++ D  YDAL  R  A+   FP  
Sbjct: 5   FTPIEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKFPQY 64

Query: 66  ARSEDPNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
                P+ P   +G  +    L KV H  P LSL  ++++++L  +  R  +       N
Sbjct: 65  VI---PDSPTQNVGSADTKSELQKVVHPAPMLSLGDVFSLDELNDWDARTTKSLG----N 117

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
              + LE KIDG  + + Y  G+ V A+ RG+G  GEDV+A ++ I  IP+ L+   P  
Sbjct: 118 QAPYNLELKIDGLAVALTYVDGQLVQASTRGNGIVGEDVTANVKTIKAIPKKLTE--PLT 175

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243
           IEVRGE+Y+ K  F ALN +  A G +P+ANPRNAA+G LR+LN     +R L  FV+  
Sbjct: 176 IEVRGEIYMPKASFAALNKQREADGLEPFANPRNAAAGSLRQLNVKITKSRNLAAFVYYT 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            +   +    Q   L++   LG P +   R  N    I  Y +E  S R +L Y IDG+V
Sbjct: 236 AEPEMLGVTTQSGALERFAELGLPTDTHNRVINKMADIADYIDEYTSERESLSYGIDGVV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++  LQ  LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV +
Sbjct: 296 VKVNQLDLQFDLGNTVKIPRWAIAYKFPPEEALTIVCDIEWTVGRTGAVTPTAVMDPVLL 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  A+LHN DY++            +DI++GD V + +AG++IP++  +I+ +R  
Sbjct: 356 AGTTVQRASLHNPDYLR-----------EKDIQIGDTVTLHKAGDIIPEIGQVILEKRPT 404

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D++ +  P+ CP C+S +V            A RC     CSAQ  E L HF SR+A NI
Sbjct: 405 DSETYQVPTICPACESNLVHIEGE------VALRCINPF-CSAQIQEGLTHFASRNAMNI 457

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + +    K    A  I+  A I+ +   Q  +  K      F + S   L D+IN
Sbjct: 458 DGMGPRVVGQLLK----AGYIKDVASIYRITVEQLLTLDK------FQEKSAVKLIDAIN 507

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  SLER +F LGIR VGA+ AR +A+ + +            A +      +  +  
Sbjct: 508 SSKENSLERLLFGLGIRMVGAKAARLIAEKFRTLS----------AVSEASVEDIANING 557

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKI 661
           +G  IAQ+IV+++  P +   +  L           +  +  +S    KK+V TG L++ 
Sbjct: 558 IGHTIAQSIVQYFSTPESKQLLVELASSGVNQSYLSDTVIDENSFFYGKKVVLTGKLEQS 617

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            R  A +++   GA V+  +S KTD++I G+  GSKL+KA QLGV +  E+QF+ 
Sbjct: 618 SRPAATKWLQDHGANVAGSVSVKTDLVIAGEAAGSKLDKASQLGVTVWTEQQFVD 672


>gi|93005182|ref|YP_579619.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5]
 gi|122989955|sp|Q1QDW8|DNLJ_PSYCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|92392860|gb|ABE74135.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5]
          Length = 691

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/713 (35%), Positives = 378/713 (53%), Gaps = 43/713 (6%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A + +    ++ +    +  H+  YY    PI+ DSEYD L+R    +   +PDL +   
Sbjct: 19  AANEDAIVAQMRTFIDALKKHNYAYYVLDNPILEDSEYDQLRRSLLELEEEYPDLIQ--- 75

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P+N++G     +  +VTH IP LSL  ++  +DLR F+ R+          S  + +
Sbjct: 76  PDSPINQVGDMPLSAFTQVTHDIPMLSLGNVFEYDDLRDFMRRVNDRL-SVAQQSPEYEM 134

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRG 189
           E K+DG  ++++Y  GKFV A  RGDG +GED++   + I  +P  +      E++EVRG
Sbjct: 135 ELKLDGLAVSLKYAYGKFVQAVTRGDGQTGEDITQNAKTIRNLPLWIPAASDIELLEVRG 194

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EV + K  F  LN      G K +ANPRNAA+G LR+L+P     R L F+ + + +   
Sbjct: 195 EVLMPKAGFERLNRLAEEKGDKTFANPRNAAAGSLRQLDPAIAASRPLAFYCYSVNQGLP 254

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q   L  ++ +GF V+  V          +YY  +K  R  LP++IDG+V KV+ 
Sbjct: 255 EHIKTQSAALAWLKTIGFTVSA-VEVVQNPREAQAYYESVKETRGDLPFEIDGMVIKVNS 313

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  +R PRW  ++KF  +   TRL  I+ Q+GRTG +TPV +LEPV +GG  +
Sbjct: 314 LALQQQLGFLSREPRWATAYKFPAETVMTRLHAIEWQVGRTGAITPVGKLEPVKVGGVTV 373

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +N TLHN   I+ L           D+R GD V V RAG+VIPKV  +  ++R  +++P 
Sbjct: 374 SNVTLHNFGEIQRL-----------DVRAGDMVSVHRAGDVIPKVTRVWTDQRPENSEPV 422

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             PS CP+C S VV   +       A  RCTGGL C AQQ+E L HFVSR A +I+GLG 
Sbjct: 423 KLPSTCPVCDSPVVLPKDE------ALARCTGGLFCPAQQVEALIHFVSRRAMDIDGLGA 476

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             L  FF+       ++  ADI+ L   Q     ++  +   G+ SV N+  +I   +  
Sbjct: 477 SWLISFFEH----GLVKTVADIYQLHNHQ----EELITLEKLGEKSVQNILSAIEASKQT 528

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIR VG   A++LA+ +             +             P VG I 
Sbjct: 529 TLARFIYALGIRGVGETTAQNLAQQFGDLDALMSASIEKLLLT----------PDVGAIT 578

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667
           A+   +F++ P NI  + AL +         +       ++ +  V TG L  + R +A+
Sbjct: 579 AELTYKFFRAPHNIEVINALREAGVHWDKVEQVASEGLPLDGQTWVITGALDSMARDEAK 638

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA VS  +S KT  ++ GD  GSK+ KA++LGVK++ EE+FL L+ +
Sbjct: 639 AKLQALGAKVSGSISAKTTALLAGDKAGSKMAKAEKLGVKVVGEEEFLVLVGE 691


>gi|257784913|ref|YP_003180130.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
 gi|257473420|gb|ACV51539.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
          Length = 705

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/739 (31%), Positives = 373/739 (50%), Gaps = 60/739 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + ALS ++     + L + +++    YY    P + D+E+D L      +  A+P+L   
Sbjct: 1   MAALSPKE-TARAAELNRILNHAAYAYYALDNPELTDAEFDRLLIELQQLEAAYPELITE 59

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GG ++     V H+    S++   N+E+L  +++R          N + +
Sbjct: 60  ---DSYTQRVGGYVSEQFEPVQHAARMYSMDDAMNLEELDAWLSRTDEALGASPTNPVAY 116

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--------- 179
           T E KIDG  + + Y  G+FV AA RGDG +GE+V+A +  I  +PR L+L         
Sbjct: 117 TCELKIDGLGVALTYRDGQFVRAATRGDGSTGENVTANVLTISDVPRELALAGLERVENR 176

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNF 238
            + + IEVRGEVY+ K+ F+ LN++  A G++P+ANPRNAA+G LR+ +P     R L  
Sbjct: 177 GLNQSIEVRGEVYMPKHSFIRLNEDADAAGKQPFANPRNAAAGSLRQKDPKITAHRDLET 236

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F++ +     +    Q+E L  +R  GF VN   R+      +  +  +    R  L YD
Sbjct: 237 FIYAVADEGPLDVHSQWEFLNWLRSCGFNVNPHARRCLNAQEVHDFCAQALEQRGDLNYD 296

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KVD F+ Q+ LG  +R+PRW I+ KF  ++  T L +I IQ+GRTG+LTPVA  
Sbjct: 297 IDGVVVKVDSFASQEALGFTSRAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEF 356

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV + G+ I  ATLHN D I+            +++R GD ++V +AG+VIP+VV  ++
Sbjct: 357 DPVTVAGSTIARATLHNLDEIRR-----------KNVREGDTIIVHKAGDVIPEVVGPVL 405

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           N R  DA  F  P+ CP C S V+++          A RC   + C AQ +ERL H+ SR
Sbjct: 406 NLRPADAVEFQMPATCPSCGSPVIQEEGE------VAFRCV-SIDCPAQAVERLIHWGSR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT-LQRRQQT--------STTKIENILG 529
            A +I+GLG + ++   +       +   AD +  L               T   +++ G
Sbjct: 459 KAMDIDGLGDELINRMVEE----GVLSDVADFYDKLTEEMLACMPTGRVYDTDTADHLSG 514

Query: 530 ----FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                G      +   + + +   L R +F +G+RHVGA +A  LA+ + S Q  A    
Sbjct: 515 DSIPVGHTIAKKVMAKVEESKTRGLGRVLFGIGMRHVGANVAELLAQEFGSIQALATAPV 574

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVS 644
             IA           +P +G  IA+++ EF+  P N+  +E      V     + E  + 
Sbjct: 575 EKIA----------EIPGIGPKIAESVHEFFSIPENVAVIERLRQAGVVLEEEKTENELP 624

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +     V TGTL+   R +A   +  +GA VS  +S+KT  ++ G+  GSKL KA+ L
Sbjct: 625 QTLAGLTFVLTGTLEHFTRDEAGAQLKAMGAKVSGSVSKKTSFVVAGEAAGSKLTKAESL 684

Query: 705 GVKIMNEEQFLFLLQQYNT 723
           GV +++E     +L+    
Sbjct: 685 GVPVLDETALQQILETGQA 703


>gi|224543223|ref|ZP_03683762.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523856|gb|EEF92961.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM
           15897]
          Length = 664

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/700 (34%), Positives = 379/700 (54%), Gaps = 48/700 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L+  ++ ++  YY    P + D EYD L      I    P    +   + P  ++
Sbjct: 7   ERLNELKALLNKYNYEYYVQDNPTVSDQEYDRLMEELIRIEQVNPAWITT---DSPSQRV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     KVTH    +SL  I+N +++  F  R+       +     +  E K+DG  
Sbjct: 64  GGEVLEGFKKVTHQRMMMSLGDIFNEDEVYTFNDRVTDVIPNPE-----YICELKLDGLS 118

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ Y+ G   Y A RG+G  GED++  ++ I +IP  L ++    +EVRGE+ + K   
Sbjct: 119 VSLVYQDGVLQYGATRGNGTVGEDITHNVKTIRSIP--LHIDFKGPLEVRGEIIMPKKAL 176

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             LN+E    G   +AN RNAA+G +R+L+      R L+ F++ + + S++ A   YE 
Sbjct: 177 ERLNEERTDAGLPLFANCRNAAAGSIRQLDSRVAAKRGLDAFLYHVPEASQLNASTHYEC 236

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K++ LGF  N   R+  T   + +Y  E+  +R TLPYDIDG+V KV++   Q++LG 
Sbjct: 237 LEKIKDLGFKTNPYTRKCKTIQEVWNYIEEVAKLRPTLPYDIDGVVIKVNDLDSQRKLGY 296

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+ P+W I++KF  ++  T+L DI   IGRTG +TP A LEPV + G+L+  ATLHNED
Sbjct: 297 TAKVPKWAIAYKFPAEEVITKLKDIIFTIGRTGQITPNAVLEPVRVAGSLVQRATLHNED 356

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
                          +DIR+GD V+V++AG+VIP+VV  I   R     PF   + CP C
Sbjct: 357 NC-----------IRKDIRIGDDVIVRKAGDVIPEVVSAIKERRTGHEIPFKMITVCPKC 405

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +VR  N       AA+ C     C ++++E+L HF SR+A NI+GLG + ++ F+  
Sbjct: 406 GSLLVRKPNE------AAYYCVNE-ECDSKKIEKLIHFASREAMNIDGLGDKIIEQFYN- 457

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +    DI+ L   ++    +I +I GFG  S+  L ++I   +  SLE+ +F L
Sbjct: 458 ---LGFVTCIEDIYHLGVHEK----EIMDIEGFGKKSMDKLLEAIENSKVNSLEKLLFGL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI+ +GA++A +LA ++ S            A  N +++ L  +  VGD IA ++  F +
Sbjct: 511 GIKGIGAKMADTLAYHFGSMD----------ALLNANYVQLTSIKDVGDTIASSLAAFKR 560

Query: 618 NPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           N RN+  +  L +        +  +   +   +K +V TGTL  + R + ++Y+T  GA 
Sbjct: 561 NERNLELIAHLKELGLNMDYLKVRQEGDNPFRDKTVVITGTLTLMTRKQIKDYLTSQGAN 620

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           V+  +S+KTD++IVG+NPGSK  KA  LG+ IMNE  F  
Sbjct: 621 VTGSVSKKTDLVIVGENPGSKYTKAVDLGISIMNESAFKE 660


>gi|308271402|emb|CBX28010.1| DNA ligase [uncultured Desulfobacterium sp.]
          Length = 674

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/710 (35%), Positives = 401/710 (56%), Gaps = 50/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              K++ +L+ E+  H+  YY    P I D++YD + +    +   +P L     P+ P 
Sbjct: 8   DIAKKVENLKSELQKHNYHYYVMDDPQISDTQYDKMMQELIELEAKYPML---STPDSPS 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G E      ++ HS+  LSL+  ++  D+  F  R+        D  I +T EPK+D
Sbjct: 65  MKVGAEPVKKFEQIRHSVKMLSLDNAFSDSDILNFDRRVKEGL--MADEQILYTAEPKMD 122

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGE 190
           G  + + Y+ G+ V A+ RGDG +GED+++ ++ I ++P +L  N     IP  +E RGE
Sbjct: 123 GVAVELVYKDGRLVSASTRGDGETGEDITSNVKTIRSVPLLLQQNKKEHIIPARLEARGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V ISK  F  LN++M++ G   +ANPRNAA+G LR+L+      R L  + +G+G+   I
Sbjct: 183 VIISKEGFKRLNEDMLSQGLALFANPRNAAAGSLRQLDSKVTAKRPLEIYFYGVGEVEGI 242

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K  ++ L  ++ LG  +N  ++     + +  YY E++ +RS LPYDIDG+V KVD  
Sbjct: 243 SCKSHWDWLYALKELGLRINPYIKPKININAVCKYYKELEQMRSGLPYDIDGMVVKVDSV 302

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG +ARSPRW +++KF   Q +T++LDI +Q+GRTG +TPVA LE VNIGG  ++
Sbjct: 303 QYQEQLGTKARSPRWAVAYKFKAIQETTKVLDILVQVGRTGAVTPVACLETVNIGGVNVS 362

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNED I+            +DIR+GD VLV+RAG+VIP++V +I + R+     F 
Sbjct: 363 RATLHNEDEIRN-----------KDIRIGDTVLVQRAGDVIPEIVKVIDSARNGSEIIFC 411

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S+++RD         +  RC    +C A+   +++HFVS+ AF+I+GLG++
Sbjct: 412 MPQNCPSCNSQLIRDEKE------SLIRCVNN-SCPAKTKAQIEHFVSKRAFDIDGLGEK 464

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++  F  +     +   ADIF L +       K+E +   G  S  NL+++I K +NI+
Sbjct: 465 LINQLFDKK----YLSSYADIFYLDK------IKMEGLERMGLKSAGNLFEAIEKSKNIN 514

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RFI++LGIRHVG  IA  LA  Y  Y+ F              +  L  +  VG I+A
Sbjct: 515 FARFIYALGIRHVGEHIAEILASKYEKYEKFCSAT----------YDDLKNIKGVGPIVA 564

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q+I++F     N+  +E +L      I   E   S+ ++ K  V TGTL+ + R++A   
Sbjct: 565 QSIIDFLGREDNLNNIERMLNS-GVIIRYGENRKSTTLDGKIFVLTGTLESMTRNEAIIK 623

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +   G  +S  +S+KTD ++ G +PGSK+EKA+  GV+I++E +   + +
Sbjct: 624 IKSFGGKISESVSKKTDYLVAGKSPGSKIEKAKAAGVEIIDENKLKIMFE 673


>gi|325675870|ref|ZP_08155554.1| DNA ligase [Rhodococcus equi ATCC 33707]
 gi|325553841|gb|EGD23519.1| DNA ligase [Rhodococcus equi ATCC 33707]
          Length = 711

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/736 (30%), Positives = 359/736 (48%), Gaps = 45/736 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           +  +  + +   S E  R+    L + +  H   YY    PI+ D E+D L    +A+  
Sbjct: 10  VTSQPDVEVVPASAED-RERWQELAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALEE 68

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY----- 115
             PDL     P+ P   +GG        V H    LSL+ +++ ++LR +I RI      
Sbjct: 69  RHPDL---RTPDSPTQLVGGGFATEFKAVDHLERMLSLDNVFDYDELRTWIGRIEAEVSD 125

Query: 116 -RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
            R         + +  E KIDG  + + YE G+ V AA RGDG +GEDV+   R I  IP
Sbjct: 126 GRSAGSAAHPDLHYLCEVKIDGVALNLVYENGRLVRAATRGDGRTGEDVTLNARTISDIP 185

Query: 175 RVLS----LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
             L+      IP ++EVRGEV+    DF ALN  ++A G+ P+ANPRN+A+G LR+ NP 
Sbjct: 186 ETLTPSDEYPIPALLEVRGEVFFRLEDFAALNASLVADGKAPFANPRNSAAGSLRQKNPA 245

Query: 231 DITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
              R  L    HGLG+T      GQY+    +   G PV+    +      +V       
Sbjct: 246 VTARRRLGMICHGLGRTEGFDPVGQYDAYTALAAWGLPVSTHTSRVVGADAVVEKVKYWD 305

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  + ++IDGLV KVDE SL ++LG  +R+PRW +++K+  ++A+T+L+DI + +GRT
Sbjct: 306 EHRHDVEHEIDGLVVKVDEMSLHRRLGATSRAPRWAVAYKYPPEEATTKLVDIRVSVGRT 365

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TP A +EPV + G+ +  ATLHN   +K            + + +GD V++++AGEV
Sbjct: 366 GRVTPFAYMEPVLVAGSTVALATLHNASEVKR-----------KGVLIGDTVVIRKAGEV 414

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IP+V+  +V+ R    + F  P+ CP C + +         +  A  RC    +C AQ  
Sbjct: 415 IPEVLGPVVDVRDGSEREFVMPTECPECGTTL-----APAKEGDADIRCPNQRSCPAQLR 469

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
           ER+ H   R AF+IE LG +      +    A  I    D+F+L               G
Sbjct: 470 ERVFHVAGRGAFDIEVLGYEAATALLQ----AGVISDEGDLFSLTEDDLLEAPLFRTKAG 525

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
               +   L D++   +   L R + +L IRHVG   AR+LA  + S +         +A
Sbjct: 526 KLSANGRRLLDNLGSAKQQPLWRVLVALSIRHVGPTAARALASEFGSLERIENAGVEELA 585

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
                      V  VG  IA A+V +++   +   V              ++++   +E 
Sbjct: 586 A----------VDGVGGTIAAAVVAWFEVDWHRDIVAKWRAAGVTMEDERDESIVRNLEG 635

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
             +V TG+L+   R +A+E +   G   +  +S+KT  +++G+ PGSK  KA++LGV I+
Sbjct: 636 LSIVVTGSLEGFSRDEAKEAILVRGGKAAGSVSKKTAFVVIGEAPGSKAAKAEELGVPIL 695

Query: 710 NEEQFLFLLQQYNTTL 725
           +E+ F  LL+     +
Sbjct: 696 DEDGFRRLLEHGPEGV 711


>gi|325288193|ref|YP_004263983.1| DNA ligase [Cellulophaga lytica DSM 7489]
 gi|324323647|gb|ADY31112.1| DNA ligase [Cellulophaga lytica DSM 7489]
          Length = 664

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/706 (30%), Positives = 359/706 (50%), Gaps = 49/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++ +L +E+  H+  YY    P I D ++D   +   A+    P+     D N P  
Sbjct: 3   VKEQIEALREELRKHNHNYYVLDTPTISDYDFDIKLKELQALEAKHPEF---YDANSPTL 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE+  +   V H     SL+  ++ EDL  +  R+ +      D++I FT E K DG
Sbjct: 60  RVGGEITKNFNTVVHEHRMYSLDNSYSKEDLLDWEKRVEKILG---DSNIEFTCELKYDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YE+GK V A  RGDG  G+DV+  I+ I ++P  L  + P   ++RGE+ +   
Sbjct: 117 ASISLTYEEGKLVRAVTRGDGFQGDDVTTNIKTIKSVPLQLKGDYPAKFDIRGEIVLPFE 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  +N+E IA G  PY NPRN ASG L+  + + +  R L   ++ +   + +  + Q+
Sbjct: 177 GFYKMNEERIANGEDPYMNPRNTASGSLKLQDSSLVAQRPLECLLYSVV-GANLNLETQF 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+K R  GF V    +   +   ++++       R  LPY+ DG+V KV+    Q++L
Sbjct: 236 EALEKTRSWGFKVPTVAKLCKSVDEVMAFVEYWDVHRHELPYETDGVVVKVNTLRYQEEL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  ++SPRW +++KF  +Q ST L +I  Q+GRTG +TPVA L PV + G  +  A+LHN
Sbjct: 296 GYTSKSPRWAMAYKFKAEQVSTVLNEISYQVGRTGAITPVANLAPVLLAGTTVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           D+RVGD V V++ GE+IPK+V + ++ R  +++P  +   CP
Sbjct: 356 ADQIEKL-----------DVRVGDAVFVEKGGEIIPKIVGVNLDLRPQNSEPTKYIDHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + ++R       +  A H C     C  Q   +++HF+SR A +I+GLG + ++  F
Sbjct: 405 ECNTELIRT------EGDAKHYCPNEYGCPPQITGKIQHFISRKAMDIDGLGSETVELLF 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K       I+  AD++ L   Q     ++         S  NL   +     I  ER +F
Sbjct: 459 KE----GLIQNYADLYALTVDQLLPLERMA------KKSAENLVKGVAASVEIPFERVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ LAK Y +           +A           V  +G+ IA ++V F
Sbjct: 509 ALGIRFVGETVAKKLAKAYKNIDALMYASALELA----------TVDEIGERIASSVVAF 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +QN  N+  +  L           EK ++   +++ +  V +G  + + R+  ++ +   
Sbjct: 559 FQNEINLDIINRLKGYGLQFQVSAEKLLNQTEKLKGETYVVSGVFE-MSRNDLKKLIEDN 617

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G  V + +S KT  ++ GD  G SK  KA+ L V I++E++FL  L
Sbjct: 618 GGKVGSSISSKTTFLVAGDKMGPSKRTKAESLNVPIISEQEFLAKL 663


>gi|153806306|ref|ZP_01958974.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185]
 gi|149130983|gb|EDM22189.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185]
          Length = 666

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/709 (32%), Positives = 357/709 (50%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P 
Sbjct: 2   DIKEKIEGLRAELHRHNYNYYVLNAPEISDKEFDEKIRELQDLEQAHPEY---KDENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K D
Sbjct: 59  MRVGSDINKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKALN----EDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  LN E  A     +ANPRNAASG L+  N   +  R L+ +++ L     +   G
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDG 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK
Sbjct: 234 HYENLQEAAKWGFKISDLTRKCKTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQK 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+L
Sbjct: 294 NLGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPS 432
           HN D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F +
Sbjct: 354 HNADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSSMLGEKVRFIT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D
Sbjct: 403 NCPECNSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVD 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F++       I   AD++ L      S   I+ +   G+ S  N+   I + + +  ER
Sbjct: 457 MFYR----LGLIHNTADLYDL------SVENIKGLDRMGEKSAENIITGIAQSKAVPFER 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIR VG  +A+ +AK + +     Q           D  +LI +  +G+ IAQ+I
Sbjct: 507 VIFALGIRFVGETVAKKIAKSFENIDELQQA----------DLETLISIDEIGEKIAQSI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYV 670
           + ++ N  N   +  L           E       ++  + +V +G      R + +E +
Sbjct: 557 LSYFANESNCELINRLKAAGLQLYRTEEDLSEYTDKLAGQSIVISGVFTHHSRDEYKELI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ G+N G +KLEKA++LG+ I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGENMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|188997338|ref|YP_001931589.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1]
 gi|254781435|sp|B2V5U1|DNLJ_SULSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188932405|gb|ACD67035.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 704

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/729 (34%), Positives = 393/729 (53%), Gaps = 57/729 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +  + L+ E+A+K +  L + I +HD  YY  ++P+I D EYD L +    I   +P+L 
Sbjct: 20  LDAKKLTKEEAKKIVEDLREVIRFHDWRYYVLAQPVISDYEYDKLFKLLKDIEGKYPELI 79

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  ++  E+     +V H  P LSL+  +N  DLR F  R+         + +
Sbjct: 80  ---TPDSPTQRVPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVRELTGL---DKV 133

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-- 184
            +++EPK DG  I++ YEK  FV  A RGDG  GE+++  ++ I TIP     +   I  
Sbjct: 134 EYSVEPKFDGAGISLIYEKDLFVRGATRGDGEVGEEITNNLKVIKTIPLSAKFSQYGIDK 193

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +E+RGEV I K+ F  +N+E +  G   +ANPRNAA+G +R  +P+++  R L  FV+ +
Sbjct: 194 VEIRGEVLIRKDLFKKMNEERLEEGLPLFANPRNAAAGSIRLQDPSEVAKRNLEAFVYQI 253

Query: 244 GKTS-------EIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTL 295
                          K   + ++ +  LGF      ++       ++ Y  E +  R   
Sbjct: 254 TYAEKDGKNLLGTVLKKHSDNIKMLHELGFKTPYPVMKVCIGIEEVIQYCEEWQRKRDAY 313

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           PY+IDG+V KV++ SL  +LG  +  PRW I+ KF  +QA+T+++++  Q+GRTG +TPV
Sbjct: 314 PYEIDGMVIKVNDISLYDKLGFTSHHPRWAIAFKFKARQATTKIINVVFQVGRTGAITPV 373

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A+LEPV IGG ++++ +L NED+I+            +DIR+GD VLV+RAG+VIP VV 
Sbjct: 374 AKLEPVEIGGVIVSSVSLINEDFIR-----------EKDIRIGDTVLVERAGDVIPYVVM 422

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           +I   R  + +P  FP  CP C S +V+          A +RC   + C AQ +ERL HF
Sbjct: 423 VIKEARTGNEKPIEFPKTCPSCGSPIVKPPGE------AVYRCVN-INCPAQVIERLIHF 475

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            S+DA +I+GL +  +  F+  +     +R   DI+ L          I+NI GFG  SV
Sbjct: 476 ASKDAMDIKGLSEATIRKFYNLK----LVRTIPDIYRLDYNL------IKNIPGFGPKSV 525

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL ++I + +   L R I+ LGIR+VG   A++LA       +            N   
Sbjct: 526 ENLKNAIEESKKRPLYRLIYGLGIRYVGEVTAKTLASAVRCIDDLK----------NFTI 575

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
             L+++P +G  +A  I  F+ N  N+  +E L +    +    E+    ++     VFT
Sbjct: 576 TDLMKLPDIGYKVASEIYNFFHNQENLKMIEELRELRVKTCHEEEEK-KGKLAGLNFVFT 634

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQF 714
           GTL+   R KA+E V  LG  V   +S+K   ++VG+ PGSKL+KAQ+LG VKI+NEE+F
Sbjct: 635 GTLKCCSREKAKEIVESLGGNVLDTVSKKVHYLVVGEEPGSKLQKAQKLGTVKIINEEEF 694

Query: 715 LFLLQQYNT 723
           L L+   NT
Sbjct: 695 LKLIGGENT 703


>gi|237713195|ref|ZP_04543676.1| DNA ligase [Bacteroides sp. D1]
 gi|262406666|ref|ZP_06083215.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22]
 gi|294643460|ref|ZP_06721274.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a]
 gi|294808131|ref|ZP_06766900.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b]
 gi|229446662|gb|EEO52453.1| DNA ligase [Bacteroides sp. D1]
 gi|262355369|gb|EEZ04460.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22]
 gi|292641208|gb|EFF59412.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a]
 gi|294444674|gb|EFG13372.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b]
          Length = 666

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/710 (32%), Positives = 363/710 (51%), Gaps = 53/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKALN----EDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  LN E  A     +ANPRNAASG L+  N + +  R L+ +++ L     +   G
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDG 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK
Sbjct: 234 HYENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQK 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A T L  +  Q+GRTG +TPVA L+PV + G ++  A+L
Sbjct: 294 NLGFTAKSPRWAIAYKFQAERALTCLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432
           HN D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F  
Sbjct: 354 HNADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIV 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D
Sbjct: 403 NCPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVD 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F++       I   AD++ L          I+ +   G+ S  N+   I + + +  ER
Sbjct: 457 MFYR----LGLIENTADLYKLT------VDDIKGLDRMGEKSAENIVTGIAQSKTVPFER 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I
Sbjct: 507 VIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEY 669
           + ++ N  N   V  L KE    + R E+++S    ++  + +V +G      R + +E 
Sbjct: 557 LAYFANESNRELVNRL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKEL 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 616 IEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|73662196|ref|YP_300977.1| NAD-dependent DNA ligase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|84028903|sp|Q49YU8|DNLJ_STAS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|72494711|dbj|BAE18032.1| NAD-dependent DNA ligase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 667

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/708 (32%), Positives = 378/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   +  +  L + ++ +   YY    P + DSEYD L      I    P+   +   + 
Sbjct: 1   MADIQSRVDELHRLLNQYSYEYYVKDNPSVPDSEYDKLLHELIDIETQHPEYRTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +  KV H  P LSL   +N EDLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGSAQSTFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDNI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  ++ I  IP  L +N     EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLKTIHAIP--LKINESRTFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+   A   +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A 
Sbjct: 171 PRKSFVNLNEAKAANEEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFTQFNAD 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N   ++  T   +++Y ++    R  LPYDIDG+V KV+    Q
Sbjct: 231 TQSEALDELDQLGFKTNQERQRVQTIEEVMTYIDKWTKQRENLPYDIDGIVIKVNALEQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 ETLGFTQKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAVLEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +DIR+GD V++K+AG++IP+V+  +++ R  DA+ +  PS
Sbjct: 351 LHNEDLIHD-----------KDIRIGDSVVIKKAGDIIPEVIKSVLDRRPDDAEIYHMPS 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C+  +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCEHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++E     I+  ADIF L +       ++      G+  V NL ++I K ++ SLE+
Sbjct: 453 QLYENEK----IKDVADIFYLTKEDLLPLDRM------GEKKVDNLLNAIEKAKSNSLEQ 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ +A+ Y +           +          + +  VG  +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVIAEKYGTIDELFHVTEEAL----------MDIHDVGHKLAQSV 552

Query: 613 VEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++      +  +   +   E     + ++K +V TG L ++ R++A  
Sbjct: 553 VTYLENEDIRALIDKLKAKNVNMIYKGVKTTELEGHPDFKDKTIVLTGKLYQMTRNEASN 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TD++I G++ GSKL KA++ G +I +EE F+ 
Sbjct: 613 WLALQGAKVTNSVTKNTDLVIAGEDAGSKLAKAEKFGTEIWSEEAFVQ 660


>gi|296171259|ref|ZP_06852663.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894227|gb|EFG73984.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 693

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/725 (30%), Positives = 351/725 (48%), Gaps = 47/725 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   +  P+      + R+    L  E+  H   YY    PI+ D+E+D +     A+  
Sbjct: 1   MSSAEAEPVSP----EVRRRWQELADEVREHQFRYYIKDAPIVSDAEFDTMFNDLLALED 56

Query: 61  AFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
            +P+L     P+ P   +GG        +  H    LSL+ +++ ++L  +  R+     
Sbjct: 57  RYPEL---RVPDSPTQLVGGAGFATDFTEAAHLERMLSLDDVFDRDELVAWNNRVENEVG 113

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS- 178
           +      ++  E KIDG  +++ Y  G+   AA RGDG  GEDV+   R I  +P  L+ 
Sbjct: 114 RDP----YYLCELKIDGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLTR 169

Query: 179 ---LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235
              L IP ++EVRGEV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP    R 
Sbjct: 170 AADLPIPAVLEVRGEVFFMLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARR 229

Query: 236 -LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L    HG+G+T        ++    ++  G PV     +      +          R  
Sbjct: 230 KLRMICHGIGRTDGFAPASLHDAYTALKAWGLPVAEQTARVRGLAAVEDRIGYWGEHRYE 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + ++IDG+V KVD+F+LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP
Sbjct: 290 IDHEIDGVVVKVDDFALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A + PV + G+ +  ATLHN   +K            + + +GD V++++AG+VIP+V+
Sbjct: 350 FAFMTPVKVAGSTVGLATLHNAAEVKR-----------KGVLIGDTVMIRKAGDVIPEVL 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +V+ R    + F  P+ CP C + +         +  A  RC    +C AQ  ER+ H
Sbjct: 399 GPVVDLRDGSEREFVMPTTCPECGTTL-----APAKEGDADIRCPNARSCPAQLRERVFH 453

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
              R A +IEGLG +      K    A  I    D+FTL       T       G    +
Sbjct: 454 VAGRGALDIEGLGYEAATALLK----AGVIADEGDLFTLTEDDLLRTDLFRTKAGTLSAN 509

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L D+++K + ++L R + +L IRHVG   AR+LA  + S           +A     
Sbjct: 510 GRRLLDNLDKAKTVALWRVLVALSIRHVGPTAARALATEFGSLDAIMAASTERLAA---- 565

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
                 V  VG  IA A+ E++    +   V+             + +V   +E   +V 
Sbjct: 566 ------VEGVGPTIAAALTEWFTVDWHRAIVDKWRAAGVRMADERDASVPRTLEGLTVVV 619

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L    R  A+E +   G   +  +S+KTD ++ GD PGSK +KA +LGV +++E+ F
Sbjct: 620 TGSLAGFSRDDAKEAIIARGGKAAGSVSKKTDYVVAGDAPGSKYDKAVKLGVPVLDEDGF 679

Query: 715 LFLLQ 719
             LL 
Sbjct: 680 RELLA 684


>gi|282896837|ref|ZP_06304843.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9]
 gi|281198246|gb|EFA73136.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9]
          Length = 692

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/718 (31%), Positives = 364/718 (50%), Gaps = 53/718 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L + +      YY    PI+ D+ YD L R    +   +P+L  S   + P  ++
Sbjct: 12  QRVEELRKLLQQAGYAYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTS---DSPTQRV 68

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDGT 137
           G         V H+IP  SLE  +N+E+L+ +  R  R          + +  E KIDG 
Sbjct: 69  GERPATHFSSVRHNIPLYSLENAFNVEELQTWNQRWIRHLPTPHSLTKVEYVAELKIDGA 128

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYIS 194
            + + Y+ G  V  A RGDG +GED++  +R I +IP  L    +   E +EVRGEV++ 
Sbjct: 129 ALALTYQNGVLVKGATRGDGITGEDITPNVRTIRSIPLRLNFDGIEPIEKVEVRGEVFLP 188

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTSEIF 250
              F  +N +    G + +ANPRNA +G LR+L+P  +  R L+FF + L   G      
Sbjct: 189 LEVFKQINQKRQKAGEQLFANPRNAVAGTLRQLDPRVVAQRQLDFFAYTLHIPGLDDRSI 248

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A  Q+E L+ ++ LGF V+   +  ++   +  YY    + R   PY  DG+V K++ F 
Sbjct: 249 ANTQWESLELLQKLGFRVDVNHKLCSSVDEVAQYYQYWNTERLNSPYMTDGVVVKLNAFK 308

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG   + PRW I+ K+A ++A TR+ +I + +GRTG LTP+A + PV + G  ++ 
Sbjct: 309 LQEQLGFTQKFPRWAIALKYAAEEAPTRVENIMVNVGRTGALTPLAEMRPVQLAGTTVSR 368

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D ++ L           DIR+GD V+V++AGE+IP+VV +I   R  + +PF  
Sbjct: 369 ATLHNSDRLREL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPNETKPFIM 417

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C   VVR+L           RC    +C A     ++H+VSRDA +I+G+G++ 
Sbjct: 418 PTNCPVCGQPVVRELGE------VVTRCVNA-SCPAILKGEIEHWVSRDALDIKGIGEKL 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            +   AD+++L   Q     ++      G  S   L   I + +N   
Sbjct: 471 VHQLVDK----GLVHSVADLYSLTEEQLCGLERM------GKRSAEKLVQVIRESKNQPW 520

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++ LGIRHVG   A+ L++ + +    A    + I            V  +G  IAQ
Sbjct: 521 SRVLYGLGIRHVGNVNAQLLSEKFTTVDKLATAKQSDIEG----------VYGIGVEIAQ 570

Query: 611 AIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++ +++    N   +  L           +  +      ++ NK  V TGTL  ++R +A
Sbjct: 571 SVYQWFHISANQNLITRLQSIGLQFDQTQLIYNAAATKPDLVNKIFVITGTLPTLKRDEA 630

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +  + + GA V+  LS+KTD ++VGD  GSKLEKA+ LG+K ++E + L +L    T 
Sbjct: 631 KSLIQKAGAKVTDSLSKKTDFVVVGDKAGSKLEKARALGIKQLDEAELLEMLSCEGTN 688


>gi|157363572|ref|YP_001470339.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO]
 gi|190359296|sp|A8F541|DNLJ_THELT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157314176|gb|ABV33275.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO]
          Length = 678

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/707 (33%), Positives = 374/707 (52%), Gaps = 45/707 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  +K +  L +EI YH+  YY  + PII D EYD L +    +   +P+L     P+ 
Sbjct: 4   PEDIKKRIEKLREEIEYHNYRYYVLADPIISDEEYDRLMQELIELEKKYPELV---TPDS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G ++      V HS P LSL+  ++   +R+F  R+ +  +K   ++I +  E K
Sbjct: 61  PSQRVGEKVLDEFRSVEHSEPMLSLDNTYDEAQIREFDKRVRKLLEK---DTIEYVTELK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + +RYE G+FV    RGDG  G+D++  ++ + +IP +L    P  +EVRGE+Y+
Sbjct: 118 IDGVSVALRYENGRFVLGLSRGDGTRGDDITENLKKVRSIPLILRE--PVTVEVRGEIYM 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
              +F  LN+E   V    +ANPRNA +G LR+L+ + I  R L+ F++ +        +
Sbjct: 176 PTEEFERLNEERKKVDGPLFANPRNATAGTLRQLDTSVIRNRRLDSFIYYVLSPERYGLQ 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q++ L+ ++ +GF VN   +       ++ Y+ +    +S L Y +DG+V KV+ F+ Q
Sbjct: 236 TQWDALKWLKKIGFKVNPYSQLCQNIDQVIDYWKQWIEKKSELSYWVDGVVVKVNHFNFQ 295

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG  +RSPRW I+ KF  ++A TR+L+I +Q+GRTGILTPVA LEP+ + G ++   +
Sbjct: 296 SILGSTSRSPRWAIAFKFPAQRAKTRVLNIIVQVGRTGILTPVAELEPIQLAGTVVKRVS 355

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYI+            +DIR+GD+V V+++G +IP+VV +I +ER+   +    PS
Sbjct: 356 LHNFDYIE-----------EKDIRIGDQVYVEKSGGIIPQVVSVIADERNGSEKKIEIPS 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +V      K      A RC     C A+    L+ FVSR A NI+GLG++ +D
Sbjct: 405 KCPVCSGKV-----GKIDSEDVALRCLNP-HCPAKLKRALETFVSRGALNIKGLGEKLID 458

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               S      ++  ADIF L   + +         G G   + NL   I + +   L +
Sbjct: 459 RLVDS----GLVKDIADIFYLTPFELSQLG-----SGIGQKMIANLLAQIEQAKKTPLHK 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +  LGI  VG + AR L + + S +                   L ++  +G  IA+ I
Sbjct: 510 ILTGLGIPLVGEKTARILTQKFRSIKRLLSS----------SVDELTQIEGIGIEIAKNI 559

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            E++ N +    +  L K       +     S  + N     TGTL+   R + ++ V  
Sbjct: 560 REYFDNEKTRQIIGKLEKAGLNLEEKEAVVQSKILSNLTFAVTGTLKNFTRDQIKQLVQS 619

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LG  V+  +S+ TD +IVGDNPGSKL KA+ LGVK++ E++FL  ++
Sbjct: 620 LGGQVTDSVSKSTDYVIVGDNPGSKLTKARNLGVKLLTEDEFLQFVK 666


>gi|312140511|ref|YP_004007847.1| DNA ligase (nad+) liga [Rhodococcus equi 103S]
 gi|311889850|emb|CBH49167.1| DNA ligase (NAD+) LigA [Rhodococcus equi 103S]
          Length = 712

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/737 (30%), Positives = 359/737 (48%), Gaps = 46/737 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           +  +  + +   S E  R+    L + +  H   YY    PI+ D E+D L    +A+  
Sbjct: 10  VTSQPDVEVVPASAED-RERWQELAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALEE 68

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI------ 114
             PDL     P+ P   +GG        V H    LSL+ +++ ++LR +I RI      
Sbjct: 69  RHPDL---RTPDSPTQLVGGGFATEFKAVDHLERMLSLDNVFDYDELRTWIGRIEAEVSD 125

Query: 115 -YRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI 173
                       + +  E KIDG  + + YE G+ V AA RGDG +GEDV+   R I  I
Sbjct: 126 GRSAGSAAAHPDLHYLCEVKIDGVALNLVYENGRLVRAATRGDGRTGEDVTLNARTISDI 185

Query: 174 PRVLS----LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229
           P  L+      IP ++EVRGEV+    DF ALN  ++A G+ P+ANPRN+A+G LR+ NP
Sbjct: 186 PETLTPSDEYPIPALLEVRGEVFFRLEDFAALNASLVADGKAPFANPRNSAAGSLRQKNP 245

Query: 230 TDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288
               R  L    HGLG+T      GQY+    +   G PV+    +      +V      
Sbjct: 246 AVTARRRLGMICHGLGRTEGFDPAGQYDAYTALAAWGLPVSTHTSRVVGADAVVEKVKYW 305

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
              R  + ++IDGLV KVDE SL ++LG  +R+PRW +++K+  ++A+T+L+DI + +GR
Sbjct: 306 DEHRHDVEHEIDGLVVKVDEMSLHRRLGATSRAPRWAVAYKYPPEEATTKLVDIRVSVGR 365

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TP A +EPV + G+ +  ATLHN   +K            + + +GD V++++AGE
Sbjct: 366 TGRVTPFAYMEPVLVAGSTVALATLHNASEVKR-----------KGVLIGDTVVIRKAGE 414

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+V+  +V+ R    + F  P+ CP C + +         +  A  RC    +C AQ 
Sbjct: 415 VIPEVLGPVVDVRDGSEREFVMPTECPECGTTL-----APAKEGDADIRCPNQRSCPAQL 469

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
            ER+ H   R AF+IE LG +      +    A  I    D+F+L               
Sbjct: 470 RERVFHVAGRGAFDIEVLGYEAATALLQ----AGVISDEGDLFSLTEDDLLEAPLFRTKA 525

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           G    +   L D++   +   L R + +L IRHVG   AR+LA  + S +         +
Sbjct: 526 GKLSANGRRLLDNLGSAKQQPLWRVLVALSIRHVGPTAARALASEFGSLERIENAGVEEL 585

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
           A           V  VG  IA A+V +++   +   V              +++++  +E
Sbjct: 586 AA----------VDGVGGTIAAAVVAWFEVDWHRDIVAKWRAAGVTMEDERDESIARNLE 635

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
              +V TG+L+   R +A+E +   G   +  +S+KT  +++G+ PGSK  KA++LGV I
Sbjct: 636 GLSIVVTGSLEGFSRDEAKEAILVRGGKAAGSVSKKTAFVVIGEAPGSKAAKAEELGVPI 695

Query: 709 MNEEQFLFLLQQYNTTL 725
           ++E+ F  LL+     +
Sbjct: 696 LDEDGFRRLLEHGPEGV 712


>gi|322437173|ref|YP_004219385.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9]
 gi|321164900|gb|ADW70605.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9]
          Length = 704

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/741 (31%), Positives = 365/741 (49%), Gaps = 74/741 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S     +++  L +++ +H+  YY    P + D +YD+L  R  A+    P++  S   
Sbjct: 1   MSKGSVEEQVKELREQLEHHEHLYYVMDTPELTDGQYDSLMNRLKALEAEHPEMVTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      KV HS P LSL+  +N EDLR +  R+          ++ +T E
Sbjct: 58  DSPTQRVGGKPADGFQKVKHSRPMLSLDNAYNEEDLRAWDVRVRGGLP--GTEAVAYTCE 115

Query: 132 PKIDGTMITIRY-----EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL------N 180
            K+DG  + + Y     +  +      RGDG +GEDV++ +R I +IP  +S        
Sbjct: 116 LKLDGLSLALHYRGASHDGSQLERGLTRGDGTTGEDVTSNVRTIRSIPLTISAAKLKAAG 175

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
           +P   EVRGE  +    FL +N+E  A G    ANPRNAA+G +R L P  +  R L+F+
Sbjct: 176 LPMEFEVRGECVMPHAAFLKMNEEFEAAGLAAKANPRNAAAGTIRTLEPNIVAQRRLDFY 235

Query: 240 VHGL--GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            + L   +  E+    Q E L  +   G  VN  V   ++  G+  +    + +R +L Y
Sbjct: 236 AYFLLQAEGGEMLLGSQSEALTALGKAGMRVNPQVATVDSIDGVWEFIQRCEPLRDSLGY 295

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KVD+ + Q++LG   ++PRW I++KFA +   T+L  +  Q+GRTG +TPVA+
Sbjct: 296 EIDGIVIKVDKAAQQRRLGFTGKAPRWAIAYKFAARAGVTKLEGVAFQVGRTGKVTPVAQ 355

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L PV IGG  +  ATLHN D I  L            +R+GD V V+R G+VIPK+  ++
Sbjct: 356 LSPVFIGGTTVKRATLHNPDEIVRL-----------GVRIGDFVSVERGGDVIPKITGVV 404

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +     Q   FP  CP C S +V++            RC    +C A+  E L HF +
Sbjct: 405 LEK-PRGTQEIVFPECCPACGSALVKEEGE------VDWRCVNA-SCPARLREELIHFGA 456

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAF-------------------SIRIPADIFTLQRRQQ 518
           R   NIEGLG   +       + A                     +R  AD++ L + Q 
Sbjct: 457 RGVMNIEGLGDAMVGQLLGQVEDAVDETDIEKEEAAAPVTVREPLVRSIADLYRLTKEQL 516

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
               +       GD S   L D I K +   L R +  LGIRHVG   A  LA ++ + +
Sbjct: 517 VGLER------VGDKSAQALLDEIAKSKKAPLSRVLLGLGIRHVGQRTAELLASHFGAIE 570

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
                  + +          ++V  +G I+A  + +F+   +N   V+ L  E+   +  
Sbjct: 571 PLMGATQDEL----------VQVNEIGPIVAATVHDFFAQEQNQALVKEL-LEIGLEMKA 619

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            ++  ++ +E    V TGTL  + R  A+E +   G  VS  +S+KTD ++ G++ GSKL
Sbjct: 620 EKRVTTTVLEGLTFVLTGTLPTLTREIAKEKIEAAGGRVSGSVSKKTDYVVAGEDAGSKL 679

Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719
           EKA+ LGVK+++E   L LL+
Sbjct: 680 EKAESLGVKVVDEAGLLELLE 700


>gi|317121135|ref|YP_004101138.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885]
 gi|315591115|gb|ADU50411.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885]
          Length = 764

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/768 (32%), Positives = 381/768 (49%), Gaps = 108/768 (14%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           +I +HD  YY   +P I D+ YDAL R    +   FP++     P+ P  ++GG+     
Sbjct: 34  QIRHHDYLYYVLDRPEIDDAAYDALMRELRELEARFPEIV---TPDSPTQRVGGKPAAPF 90

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
            +V H+ P LSL+  ++ E+L  F  R+ R         + +  E KIDG  I + YE+G
Sbjct: 91  ARVEHAEPMLSLDNAFSREELEAFDQRVRRAVG----GDVAYVAELKIDGLSIALTYEEG 146

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVYISKNDFLALND 203
           +FV  A RGDG +GEDV+A +R I ++P  L      +P+ +EVRGEVY++ + F  LN 
Sbjct: 147 RFVRGATRGDGEAGEDVTANLRTIRSLPLRLRDRERQVPQRVEVRGEVYMTFDAFRRLNQ 206

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF---AKGQYEMLQ 259
           E  A G+ P+ANPRNAA+G +R+L+P     R LN +V+ L           + Q+E+LQ
Sbjct: 207 EQEARGQAPFANPRNAAAGSVRQLDPAVTAARSLNLWVYALAGWEGDPAAAPRSQWEVLQ 266

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +R  G PVN   R+  +   +++Y +E  + R  LPY IDG+V KVD+ + Q++LG  A
Sbjct: 267 TLRQWGLPVNPHARRCTSLDELLAYIDEWAARRHQLPYLIDGIVIKVDDLAQQRELGTTA 326

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           RSPRW I++KF  ++A TR+ DI + +GRTG LTPVA L+PV + G  ++ A+LHN DYI
Sbjct: 327 RSPRWAIAYKFPAEKARTRVRDILVSVGRTGALTPVAVLDPVLLAGTTVSRASLHNADYI 386

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           +            +D+R+GD V+V +AGE+IP+VV+++   R  D +PF+ P  CP C S
Sbjct: 387 R-----------EKDVRIGDLVVVHKAGEIIPEVVEVVKEARTGDERPFTMPERCPACGS 435

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            VVR          AA RC    AC AQQLER++HF SRDA +IEGLG   ++       
Sbjct: 436 PVVRVEGE------AATRCPNA-ACPAQQLERIRHFASRDAMDIEGLGPAVIEQLVAR-- 486

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +R  AD++ L+        ++      G  S  NL  +I+  R   L R ++ LGI
Sbjct: 487 --GLVRDVADLYRLEAEPVAQLERM------GPKSAANLIAAIDASRARPLRRLLYGLGI 538

Query: 560 R--------------------------------HVGAEIARSLAKYYLSYQN------FA 581
           R                                 +G  IA S+A ++    N       A
Sbjct: 539 RFVGERVAGVLARHFGTIHRVMEAEPAELMAVPEIGPRIAESVAAFFRDEHNRDLIRRLA 598

Query: 582 QEINNIIAHNNDDWLSLIR--------------------------VPLVGDIIAQAIVEF 615
           +      A   +   +  R                          +P V      A  + 
Sbjct: 599 EAGVRAAAGEPEPGSAAARAAAGAGAAAGVAGAAEGAGMAAGPAGIPGV--AGGDAATDG 656

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             +         +     P        V   +  K  VFTG L  + R +A+  V  LG 
Sbjct: 657 LGSGPGATGPGGVGAPPGPDGPGVPPEVRERVAGKTFVFTGGLASMTRDEAEALVEALGG 716

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             +  +SRKTD ++ G+  GSKL KA++LG+ +++E+ FL L+ +  +
Sbjct: 717 RATGSVSRKTDYVVAGEGAGSKLAKARELGIPVLDEQAFLRLVGRQPS 764


>gi|323341293|ref|ZP_08081538.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644]
 gi|323091287|gb|EFZ33914.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644]
          Length = 671

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/717 (31%), Positives = 386/717 (53%), Gaps = 55/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+A+KEL SL ++++     YY    P + D  YD   +R   +   FP+L      
Sbjct: 1   MDKEEAKKELESLREKLTKWSREYYVLDAPTVEDHVYDENYKRLLELEAKFPELVTK--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++  +  KV H IP LSL  +++ E+L  F+ R      +       +  E
Sbjct: 58  DSPSQRVGGKILTNFTKVEHEIPMLSLGDVFSKEELADFVKR----LNENAGADFGYNCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G FV  + RG+G  GED++  ++ I  +P  L LN    +EVRGE 
Sbjct: 114 LKIDGLAISLTYEDGIFVKGSTRGNGTIGEDITENLKTINAVP--LKLNEKISVEVRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ L +  +  
Sbjct: 172 YMPKKSFVDLNKKREAEGQPVFANPRNAAAGSLRQLDSKITAERNLSIFIYYLMEPEKFG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E L+KM   GF VN   R  +T   I +Y +E ++ R+ L YDIDG+V K + F+
Sbjct: 232 VKTQSEALKKMASWGFRVNGESRVCSTMDEIDAYLDEYQAKRAGLEYDIDGIVLKAEPFT 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           + + +G   + PRW I++KF   +  T + DI+  +GRTG++TP A ++PV + G  ++ 
Sbjct: 292 VHELVGNTVKVPRWAIAYKFPPDEQETIVRDIEWTVGRTGVVTPTAVMDPVLLAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             + IR+ D V + +AG++IP++ ++++ +R  D++P+  
Sbjct: 352 ASLHNPDYLN-----------EKGIRLLDTVKLHKAGDIIPEISEVVLEKRPEDSKPYEI 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C +++V   +       AA RC     C A   E L HF S++A NI+GLG + 
Sbjct: 401 PTNCPECDAKLVHLDDE------AALRCINP-KCKALMKESLTHFASKNAMNIDGLGPKI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F+       I   +D++ L         K +      + S +NL ++I+  R  SL
Sbjct: 454 IEQLFERGM----INDVSDLYKLTFDDLLLLDKFK------EKSASNLLNAIDASRKNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A+ LA+ +++    A+     I          + +  +G+ IA 
Sbjct: 504 ERLLFGLGIRHVGAKAAKLLAERFMTMDALAKASKEEI----------VAIETMGETIAD 553

Query: 611 AIVEFYQNPRNICAVEA-------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++  ++ +      +E        +      +    E    S      +V TGTL++++R
Sbjct: 554 SLSTYFNSEGANELLEELKSVGVNMSYLGKTAAELEEAASGSAFNGLTVVLTGTLERLKR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             A++++ + GA V+  +++KT+++I G + GSKL KA++LG KIMNEE+FL  +++
Sbjct: 614 SDAKKWLEEHGAKVTGSVTKKTNLLICGHDAGSKLTKAKELGTKIMNEEEFLQKMEE 670


>gi|171914081|ref|ZP_02929551.1| DNA ligase, NAD-dependent [Verrucomicrobium spinosum DSM 4136]
          Length = 669

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/714 (33%), Positives = 370/714 (51%), Gaps = 48/714 (6%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           + P  AL  E A   ++ L +EI +H+  YYQ + P I D  +DAL R    +  A P L
Sbjct: 1   MPPAAAL--ETASLRVAHLREEIEHHNRLYYQNAAPEISDQAFDALLRELQDLEKAHPSL 58

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                P+ P  ++GG       ++ H +P +SL+  ++ E++R F  R+ +   +     
Sbjct: 59  I---TPDSPTQRVGGTPLDGFKQIAHPVPMMSLDNTYSEEEMRDFFQRLVKGLGR---EK 112

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           +  T+EPK+DG  + +RYE G   YAA RGDG  G+D++  +R I  +P  L   +P+  
Sbjct: 113 VRCTIEPKVDGVAVAVRYEAGALKYAATRGDGRMGDDITQNLRTIRALPLRLPAKVPQTF 172

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEVY+++  F  +N E    G   +ANPRNA +G L++L+P  +  R L    +G+G
Sbjct: 173 EVRGEVYMTRAGFDKMNQEREEAGEPRFANPRNATAGSLKQLDPRLVAKRPLQVIFYGVG 232

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              E     Q ++ + +   G P+   +  A +   +++  +++   R  LPYD DG V 
Sbjct: 233 DVGEARLTSQDDIHKLLHDAGLPMAAHIWHAESADEVIAAIHQLDEKRKALPYDTDGAVV 292

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD F+ Q+ LG  +++PRW I++K+  +QA TRLL +DIQ+GRTG LTPVARL PV + 
Sbjct: 293 KVDAFAEQRDLGATSKAPRWAIAYKYQPEQAETRLLSVDIQVGRTGALTPVARLVPVFLS 352

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ ++NATLHN + I             +DIRVGD V++++AGE+IP VV +   +R  +
Sbjct: 353 GSTVSNATLHNFEEIVR-----------KDIRVGDFVIIEKAGEIIPAVVAVNKEKRTGE 401

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +    P  CP+CQS VV+D      +   A RCT    C  Q   RL+HF  R A +I 
Sbjct: 402 EKEVPVPVHCPVCQSPVVKD------EAQVAIRCTNP-NCPEQVKRRLEHFTHRGAMDIR 454

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG+Q +     +         PAD++ L     +   +          S+ NL   + +
Sbjct: 455 GLGEQMVAQLVDAHLAI----TPADLYDLNTHALSKLERQGA------KSIENLLKGLEE 504

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +  R IF LGI HVGA  ARSL  ++ +    A+               L++V  +
Sbjct: 505 SKKQAPWRLIFGLGILHVGASSARSLMDHFGAVDALARA----------SVEDLLKVQDI 554

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G I+AQ+I  ++Q P N   ++ L            +  S        V TGTL +  R 
Sbjct: 555 GGIVAQSIHGWFQVPANQALLDRLRSSGLQFDNPKTEQASDTFAGTSWVITGTLSE-SRE 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              E +   G  + + +S KT  ++ G+  GSKLEKA +LGVK+++E  F  +L
Sbjct: 614 VIAELIRTHGGKMVSSVSSKTTYLLAGEEAGSKLEKAAKLGVKVLSEADFRAML 667


>gi|291513768|emb|CBK62978.1| DNA ligase, NAD-dependent [Alistipes shahii WAL 8301]
          Length = 674

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/718 (30%), Positives = 372/718 (51%), Gaps = 50/718 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R+ +  L +++  H+  YY  + P I D E+DA+ R    +  A P+ A   DPN P  
Sbjct: 2   VRERIEELRRQLELHNFKYYVENAPEISDFEFDAMMRELQDLERAHPEYA---DPNSPSV 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++      V H    LSL   +++++L +FI RI R     D     +  E K DG
Sbjct: 59  RVGSDLTAEFRTVKHRYAMLSLGNTYSLDELHEFIGRIEREAGATD-----YVCELKFDG 113

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YE G+ V A  RGDG  G+DV+A +R + T+P  L   + P++ E+RGE+ +  
Sbjct: 114 TAISLTYEHGRLVRAVTRGDGVEGDDVTANVRTVRTVPLRLRGTDWPDLFEIRGEILMPY 173

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
             F  LN E  A G + +ANPRNAA+G L++ +   + R  L+  ++ L    E+     
Sbjct: 174 ASFDRLNAEREANGEQLFANPRNAAAGTLKQQSSAVVARRGLDCTLYQLA-GDELPFTSH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L+K R  GF V++  R   +   I ++     + R  LP+  DG+V KV++F++++Q
Sbjct: 233 WESLEKARQWGFKVSDAARICRSVAEIDAFIEHWDTARRRLPFPTDGVVIKVNDFAVRRQ 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A++P+W +++KF  ++A+TRL  +  Q+GRTG +TPVA LEPV + G  +  ATLH
Sbjct: 293 LGFTAKAPKWAVAYKFKAERAATRLDSVSFQVGRTGAITPVANLEPVLLAGTTVRRATLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N + +  L           DIR GD V V++ GE+IPK++ + + +R  D++PF + + C
Sbjct: 353 NAEQMAQL-----------DIRPGDTVYVEKGGEIIPKIIGVDLAQRPADSRPFEYITVC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +VR          A H C     C  Q + R+ HF+ R A +IEGLG++ ++  
Sbjct: 402 PECGTPLVRYEGE------AKHYCPNQSGCRPQIIGRIIHFIRRKALDIEGLGEETVELL 455

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           +++      +R  AD++ L+  Q         +   G+ S  N+  S+ + + +  +R +
Sbjct: 456 YEN----GLVRDVADLYDLRAEQLA------PLPRLGEKSADNIIRSVERSKAVPFQRVL 505

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIR VG   A+ LA+++ S     +     +          +    VG  IA AI+E
Sbjct: 506 FGLGIRFVGETTAKYLAEHFRSLDAVMRATREEL----------VEADEVGGRIADAIIE 555

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++    N+  +  L            +  S  +  +  V +G   +  R + +E +   G
Sbjct: 556 YFAEEDNLRIIRRLRAAGLQFEAEARRLASEALAGRSFVVSGKFTR-SRDEMKELIELHG 614

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
               A +S   D ++ GD  G +KL+KA++LGV+I++EE+F+ +++      +    +
Sbjct: 615 GRNLAAVSGSVDYLVAGDKMGPAKLKKAEKLGVRIISEEEFIAMIEGGGPVEKAAQQE 672


>gi|33866919|ref|NP_898478.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 8102]
 gi|81573701|sp|Q7U3P1|DNLJ_SYNPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33639520|emb|CAE08904.1| Putative DNA ligase [Synechococcus sp. WH 8102]
          Length = 679

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/718 (31%), Positives = 360/718 (50%), Gaps = 54/718 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + + ++  + L   ++     YY    P++ D+ YD L R    +  A P L      + 
Sbjct: 1   MAEQQQRAAELRSLLNRAAHAYYVLDAPVMEDTLYDRLYRELQQLEQADPSLL---SADS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G         V H IP  SL+  ++  +L+ +  R+ +   + DD+ +    E K
Sbjct: 58  PTQRVGKAPATGFHSVEHRIPLQSLDNAFDHGELKAWHERLLKVLDRADDSPLPLVGELK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           IDG  + + Y  G    AA RGDG SGE+++A +R I +IP  L ++  PE +EVRGE +
Sbjct: 118 IDGNALALSYRHGVLERAATRGDGSSGEEITANVRTISSIPLRLQIDDPPEWVEVRGEAF 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF- 250
           I  + F A+N+E  A G   +ANPRNA +G LR+L+P  +  R L+FF + L   S+   
Sbjct: 178 IPDDTFAAINNERAAHGDALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPSDHSN 237

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q+++L  +   GF VN      +  +GI  + +  +  R  L Y  DG+V K+++ 
Sbjct: 238 SPECQWDVLAWLEQAGFRVNPNRELCDGLNGIERFCDRWEQQRHQLTYATDGVVVKLNDL 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ + G   ++PRW I+ K+  ++A ++LL + +Q+GRTG +TPVA  EPV + G  ++
Sbjct: 298 RLQDEAGTTQKAPRWAIALKYPAEEAPSKLLKLAVQVGRTGAVTPVAEFEPVALAGTSVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN D I  L           D+ +GD V+V++AGE+IP+VV ++   R   A P  
Sbjct: 358 RATLHNADRIAEL-----------DLHLGDTVVVRKAGEIIPEVVRVLPELRPTGAVPLE 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S +VRD +       AA RC    +C A     L+H+VS+ A +++GLG +
Sbjct: 407 LPDHCPECGSNLVRDDSE------AATRCINS-SCPAILRGGLRHWVSKGALDVDGLGNK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    +       +R  AD++ L      S  +       G+ S  NL  ++ + +   
Sbjct: 460 LIQQLVER----GLVRSIADLYRLDAALLASLER------VGEKSAANLVAALEQSKQQP 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ LGIRH+G   A++LA  Y +  + A      IA           +  +G  I+
Sbjct: 510 WHRQLYGLGIRHIGEVNAKALAAAYPNSASLAAAEPESIAA----------LHGIGPEIS 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH---------EKNVSSEIENKKLVFTGTLQK 660
            ++ +++ NP N   +E L                    E N S  +  K LV TGTL  
Sbjct: 560 SSLQQWHANPPNQRLLEDLRAVGLSLEANTSELNANSTGEGNSSGALLGKTLVLTGTLPN 619

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R  A+  +   G  VS  +S+KTD ++ G+  GSKL KA+ LGV+I+ E +   LL
Sbjct: 620 LSRSDAKTLIEGAGGKVSGSVSKKTDYLVAGEAAGSKLSKAESLGVEILTEAELQKLL 677


>gi|198274661|ref|ZP_03207193.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135]
 gi|198272108|gb|EDY96377.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135]
          Length = 666

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/707 (32%), Positives = 366/707 (51%), Gaps = 50/707 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHTHNHNYYILNAPTISDQEFDRLMRELQDLEAKHPE---HYDENSPSVRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N    +V H  P LSL   ++  ++R+F  R+ +              E K DGT 
Sbjct: 62  GSDLNKEFRQVEHKYPMLSLGNTYSETEVREFYERVRKALN----EDFEICCELKFDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           I++ YE G+ V A  RGDG  G+DV+  ++ I +IP  L     P   E+RGE+ +    
Sbjct: 118 ISLTYEDGRLVQAVTRGDGVRGDDVTDNVKTIRSIPLRLSGEGYPRRFEIRGEILMPWTV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E        +ANPRNAASG L+  N   +  R L+ +++ L    E+   G YE
Sbjct: 178 FEELNREREQREEPLFANPRNAASGTLKSQNSAVVASRKLDAYLYYL-LGEELPHDGHYE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ+    GF V++ +R+A T   +  + N     R  LP   DG+V KV+    Q+ LG
Sbjct: 237 NLQEAARWGFKVSSHMRKARTLEEVFDFINYWDLERKNLPVATDGIVLKVNSQRQQRNLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  +QA T+LL +  Q+GRTG +TPVA LEPV + G ++  A+LHN 
Sbjct: 297 FTAKSPRWAIAYKFQAEQACTKLLKVTYQVGRTGAVTPVANLEPVQLSGTVVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           D+ +GD V V++ GE+IPK+  +  + R   ++  +F + CP 
Sbjct: 357 DIIESL-----------DLHLGDMVYVEKGGEIIPKITGVDKDARPEGSEKVTFITHCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C SR+VR  +       AAH CT    C  Q   R++HF+SR A NIEGLG + +D F++
Sbjct: 406 CGSRLVRYEDE------AAHYCTNEDGCPTQIKGRIEHFISRRAMNIEGLGPETVDQFYQ 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++TLQ        ++      G+ S  N+   + K + +  ER IF+
Sbjct: 460 E----GLIHDVADLYTLQAADICRLNRM------GEKSAENIIQGVEKSKTVPYERVIFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ +A+ + S  +      + + H          V  +G+ IAQ+I+ ++
Sbjct: 510 LGIRFVGETVAKKVARAFRSIDDLKSATLDDLIH----------VDEIGEKIAQSILRYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            + +N+  +E L +         E+      +++ + +V +G      R + +  + + G
Sbjct: 560 HSEKNLQLIERLREAGVQMAISEEETAGQTDKLQGQSIVISGVFAHHSRDEYKALIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
                 +S+KT  I+ G+N G SKLEKA++LG++I+NEE+FL ++ +
Sbjct: 620 GKNVGSISKKTSFILAGENMGPSKLEKAEKLGIRIVNEEEFLGMIGE 666


>gi|189461356|ref|ZP_03010141.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136]
 gi|189431885|gb|EDV00870.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136]
          Length = 667

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/708 (32%), Positives = 367/708 (51%), Gaps = 50/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P+I D E+D L R    +    P+     DPN P  ++
Sbjct: 5   ERIDQLREELHVHNYNYYVLNAPVISDLEFDKLMRELQDLEALHPEY---YDPNSPSVRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +              E K DGT 
Sbjct: 62  GSDLNKNFTQVEHKYPMLSLGNTYSQAEVTEFYERVSKSLN----EEFELCCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     P+  E+RGE+ +  N 
Sbjct: 118 ISLTYEDGKLVRAVTRGDGVRGDDVTDNVKTIRSIPLVLHGEGYPKNFEIRGEILMPWNV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E        +ANPRNAASG L+  N   +  R L+ +++ L     +   G YE
Sbjct: 178 FEELNRERELREEPLFANPRNAASGTLKSQNSAVVANRKLDAYLYYL-LGDNLPHDGHYE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ+    GF +++  R+A T   +  + N     R  LP   DG+V KV+    Q+ LG
Sbjct: 237 NLQEAAKWGFKISHISRKARTLQEVFDFINYWDVERKNLPVATDGIVLKVNSLRQQRNLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++A T+L  +  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 297 YTAKSPRWAIAYKFQAERALTKLEKVTYQVGRTGAVTPVANLDPVQLSGTVVRRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+ +GD V V++ GE+IPK+  + V+ R   ++  +F + CP 
Sbjct: 357 DIIASL-----------DLHIGDMVYVEKGGEIIPKITGVEVSARPAGSEKVTFITHCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR  +       AA+ CT   AC  Q   +++HF+SR A NIEGLG + +D F++
Sbjct: 406 CGSELVRYEDE------AAYYCTNETACPPQIKGKIEHFISRRAMNIEGLGPETVDLFYQ 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++TLQ      T  I  +   G+ S  N+   I + + +  ER +F+
Sbjct: 460 E----GLIHDIADLYTLQ------TADICRLERMGEKSAENIIQGIERSKEVPYERVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ +AK + S +          A  + +   LI V  +G+ IA +I++++
Sbjct: 510 LGIRFVGETVAKKVAKAFRSIE----------ALASANLDDLIHVDEIGEKIAGSIIQYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            N +N   VE L +         E     S +++   +V +G   +  R + +  + + G
Sbjct: 560 ANEKNRILVERLRQSGLKLEADEEDLSGYSDKLKGMSIVISGVFARHSRDEYKALIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721
                 +S+KT  I+ GDN G SKLEKAQQL + I +E +FL ++++ 
Sbjct: 620 GKNVGSISKKTSFILAGDNMGPSKLEKAQQLNIPIKDENEFLAMIEEE 667


>gi|298492390|ref|YP_003722567.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708]
 gi|298234308|gb|ADI65444.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708]
          Length = 684

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/721 (31%), Positives = 368/721 (51%), Gaps = 55/721 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++ E   + +  L   +      YY    P++ D  YD L R    +   +P L     
Sbjct: 3   QMTSE--AQLVRELRLLLQQASYAYYVLDAPVMEDMVYDRLYRELQELETQYPYLV---T 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFT 129
           P+ P  ++G         V H+IP  SLE  +N+E+L+ +  R  R    +     + + 
Sbjct: 58  PDSPTQRVGERPATHFTSVRHNIPLYSLENAFNVEELQGWDQRWRRHLMAQYYPVEVDYV 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--- 186
            E KIDG  + + Y+ G  V  A RGDG  GED++  +R I +IP  L+ +  E IE   
Sbjct: 118 AELKIDGAALALTYQNGILVRGATRGDGVMGEDITQNVRTIRSIPLRLNFDGLENIEKVE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-- 243
           VRGEV++    F  +N++    G + +ANPRNA +G LR+L+   +  R L+FF + +  
Sbjct: 178 VRGEVFLPLEVFKQINEKRQKAGEQLFANPRNAVAGTLRQLDSRIVAQRQLDFFAYTVHI 237

Query: 244 -GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G      A  Q+E L+ ++ LGF V+   R  ++   +  YY    + R   PY  DG+
Sbjct: 238 PGMDDASIANTQWEALELLQRLGFRVDTNHRLCHSIREVAEYYEYWDTERLNSPYMTDGV 297

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K++ F LQ+QLG   + PRW I+ K+A +QA TR+ +I I +GRTG LTP+A + PV 
Sbjct: 298 VVKLNTFKLQEQLGFTQKFPRWAIALKYAAEQAPTRVNNITINVGRTGALTPLAEMRPVQ 357

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ ATLHN D I+ L           DIR+GD V+V++AG++IP+VV +I   R 
Sbjct: 358 LAGTTVSRATLHNSDRIQQL-----------DIRIGDTVIVRKAGDIIPEVVRVIKELRP 406

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D  PF  PS CPIC   VVR+         A  RC    +C+A     ++H+VSRDA +
Sbjct: 407 SDTAPFIMPSHCPICGQPVVRESGE------AVTRCV-SASCAAILKGEIEHWVSRDALD 459

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+G+G++ +      E     +   +D++ L + +  +  ++         S   L ++I
Sbjct: 460 IKGMGEKLVHQLVDKE----LVLSVSDLYKLIKEELCALERMGQ------KSAQKLVNAI 509

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + +N    R ++ LGIRHVG+  A+ L + + + +  A    + I            V 
Sbjct: 510 AQSKNQPWSRVLYGLGIRHVGSVNAQLLTEKFTTVEQLAAAKQSDIEG----------VY 559

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTL 658
            +G  IAQ++ ++++ P N   +  L        + +  +    ++  +  K  V TGTL
Sbjct: 560 GIGAEIAQSVYQWFRTPANQTLISRLQDIGLQLANTAETKPVGEINPNLAGKIFVVTGTL 619

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             ++R +A+  + + G  V+  +SRKTD ++VG + G K++KAQ LG+  + E Q L +L
Sbjct: 620 PTLKRDEAKVLIQKAGGKVTDSVSRKTDFLVVGADAGFKVKKAQSLGITQLTETQLLKML 679

Query: 719 Q 719
           +
Sbjct: 680 E 680


>gi|300781381|ref|ZP_07091235.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC
           33030]
 gi|300533088|gb|EFK54149.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC
           33030]
          Length = 674

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/716 (31%), Positives = 364/716 (50%), Gaps = 47/716 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           EA   E   ++ + L +E+  H D YY    P+I D+E+D + RR   +    P+LA   
Sbjct: 3   EAQVSEDLLRQWNELAKEVRRHRDLYYNGD-PVITDAEFDEMFRRLQQLEEDHPELAV-- 59

Query: 70  DPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P  ++G    + +   V H  P +SL+ +++ E+L  ++T+              +
Sbjct: 60  -PDSPTKEVGAAPTSTAFEDVEHLEPMMSLDNVFSAEELSDWLTKT----------PGPY 108

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E KIDG  I + YE G+   AA RGDG  GE+++A  R I  IP  L+ + P ++EVR
Sbjct: 109 LTELKIDGVSIDLVYENGQLTRAATRGDGRVGENITANARVIDDIPHELTGDFPALLEVR 168

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEV+I   DF  LN+     G KP+ANPRN A+G LR+ +P  +  R L    HG+G   
Sbjct: 169 GEVFIRPEDFPELNELRQKEGGKPFANPRNTAAGGLRQKDPEKVRNRKLRMICHGIGARE 228

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +    Q++  +K+   G PV+   ++A T   +          R    +++DGLV KVD
Sbjct: 229 GVEFSSQHDAYEKLAAWGLPVSEYTKRAETAEEVQKTVEYWADHRHDAIHEMDGLVIKVD 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+QLG  +R+PRW I++K+  ++ +T+L DI + +GRTG  TP A LEPV + G+ 
Sbjct: 289 DLAAQRQLGFTSRAPRWAIAYKYPPEEVTTKLKDIAVSVGRTGRATPFAVLEPVFVSGST 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN+  +K            + + +GD V+V++AGE+IP+V+  + + R    + 
Sbjct: 349 VSMATLHNQHEVKR-----------KGVLIGDTVVVRKAGEIIPEVLGPVADLRDGTEKE 397

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C +++         +  A  RC    +C AQ  +RL++  SR AF+IE LG
Sbjct: 398 FVFPENCPVCGTKL-----APAKEGDADWRCPNTRSCPAQLGQRLEYLASRGAFDIEALG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++       S      +    D+FTL       ++      G  + S   L  ++ + + 
Sbjct: 453 EKGAQDLIAS----GVLIDEGDLFTLTESDLEKSSVYTTKAGTVNASGKKLLANLEQAKE 508

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R + +L IRHVG   AR+LA  Y S         + +A              VG I
Sbjct: 509 KELWRVLVALSIRHVGPTAARALASRYGSMGKLLDASVDDLADT----------DGVGGI 558

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA++  E+++   +   V         ++     ++   +E   +V TG+L+   R  A+
Sbjct: 559 IAESFKEWFEVEWHRDIVRK-WGAAGVNMEDEASDLEQTLEGLTVVVTGSLENFSRDGAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           E +   G   +  +S+KTD ++VG+N GSK  KA+ LG+ I++E+QF  LL+  + 
Sbjct: 618 EAILSRGGKAAGSVSKKTDYVVVGENAGSKETKARDLGITILDEDQFRTLLETGDA 673


>gi|325335472|gb|ADZ11746.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Riemerella
           anatipestifer RA-GD]
          Length = 669

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/712 (30%), Positives = 357/712 (50%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S++  + ++  L +E+  H+  YY    P I D E+D +      +  A+P+ A   D 
Sbjct: 1   MSLDDIKHKIEELREELHQHNYNYYVLDTPSISDYEFDMMLEELKELELAYPEFA---DN 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG +  +   V H     SL+  +N EDL  +  R+ +     D   I +  E
Sbjct: 58  NSPTQRVGGNITKNFPTVEHRHRMYSLDNSYNFEDLSDWQNRLIKSL---DTTDIEYVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I+I YE G F  A  RGDG  G++++A ++ I  IP  +    P    +RGE+
Sbjct: 115 LKYDGASISILYENGAFKQAITRGDGFQGDEITANVKTISDIPLKIKGEYPNTFYIRGEI 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y++K  F  +N      G   + NPRN ASG L+  + T++  R L+  ++ +    E  
Sbjct: 175 YLTKKHFNLINKAREKEGLDLFMNPRNTASGSLKMQDSTEVRKRKLSAVLYQVV-AEETP 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K  +E+L++ +  GF  +   +       + ++ +     R  L ++IDG+V KV+   
Sbjct: 234 VKTHWELLEQTKDWGFKTSQQAKLCKNLDEVKAFIDYWDKERQHLDFEIDGIVIKVNSLK 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  A+SPRW +++KF  ++  T+L  I  Q+GRTG +TPVA L+PV + G ++  
Sbjct: 294 QQQLLGYTAKSPRWAMAYKFKAEKVETQLESISYQVGRTGAITPVANLKPVLLAGTVVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+ L+   +           D V V++ GE+IPK+V +   +R P+A    +
Sbjct: 354 ASLHNEDIIRKLNLHNQ-----------DFVYVEKGGEIIPKIVGVNEEKRQPNATLVEY 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            S CP C + +VR+         AAH C     C  Q + ++ H+VSR A NIE LG + 
Sbjct: 403 ISHCPECNTPLVRNEGE------AAHFCPNEAHCPPQVVGKMIHYVSRKALNIENLGSET 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F+       I   AD +TL + Q     ++       + S  N+ D I K + I  
Sbjct: 457 IEQLFRE----GLISNIADFYTLTKEQLLPLERMA------EKSAQNILDGIEKSKQIPF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGI+HVG  +A+ L K + +     +               L  V  VG  IA+
Sbjct: 507 EKVLFGLGIKHVGETVAKKLVKNFHTIDGLKKAT----------LEELTEVEDVGIKIAE 556

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++V ++QN  NI  ++ L                VS  +E K  +FTG L    R +A+E
Sbjct: 557 SLVNYFQNEENIEILDRLKSYGIQLEQEENTNTKVSDALEGKTFLFTGKLSLFTREQAEE 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
            V + G    + +S+  + ++VG+  GSKL+KAQ LG V I++E++FL L+ 
Sbjct: 617 MVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQTLGTVTILDEQEFLDLIN 668


>gi|89891625|ref|ZP_01203129.1| DNA ligase [Flavobacteria bacterium BBFL7]
 gi|89516172|gb|EAS18835.1| DNA  ligase [Flavobacteria bacterium BBFL7]
          Length = 684

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/717 (31%), Positives = 367/717 (51%), Gaps = 52/717 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++ SL  E+  H+  YY    P I D E+D    +   +  A P+     D   P  +
Sbjct: 4   KEQIQSLRDELREHNYNYYVNDNPTISDFEFDKKLEQLKTLEAAHPEF---YDATSPSVR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+  +   + H     SL+  ++IEDLR +  RI +      D  I +T E K DG 
Sbjct: 61  VGGEVTKNFNTIKHINRMYSLDNSYSIEDLRDWEKRIKKIV----DGEIQYTCELKYDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++ YE GKFV A  RGDG+ G++V+A +R I ++P  L   ++P   E+RGE+ +  +
Sbjct: 117 SISLHYENGKFVQAVTRGDGNQGDEVTANVRTIKSVPLQLKGDDVPAKFEIRGEIVLPWD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  +N+E    G   Y NPRN ASG L+  +  ++  R L+  ++ L     +  K Q+
Sbjct: 177 GFHKMNEERADQGLDLYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQLA-GENLPVKSQF 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L   R  GF      +  ++   +  + N     R  LPY+ DG+V KV+    Q +L
Sbjct: 236 DSLTLARKWGFKAPQESKLVHSIEEVFEFINHWDVARKELPYETDGVVIKVNSLDQQDEL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++P+W +++KFA +Q STRL +I  Q+GRTG +TPVA LEPV I G  +  A+LHN
Sbjct: 296 GFTAKAPKWAMAYKFAAEQVSTRLEEITYQVGRTGSITPVANLEPVEISGTTVRRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           DIRVGD V V++ GE+IPK+V + + +R  ++ P  + + CP
Sbjct: 356 ADQIEKL-----------DIRVGDEVYVEKGGEIIPKIVAVELTKRPDNSTPTVYATHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR       +  A H C   +AC  Q   R++HF+SR A +I+G+G + +    
Sbjct: 405 ECHTELVRT------EGDAKHYCPNDMACPPQVKGRIEHFISRKAMDIDGIGAETVGQLV 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  I   AD++ L   Q     ++         S  N+ + I   + +  ER +F
Sbjct: 459 D----AGFINNYADLYDLTVEQVLPLERMAQ------KSAENMINGIEASKQVPFERVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFA-----------QEINNIIAHNNDDWLSLIRVPLV 604
            LGIR+VG  +A+ LAK+Y +                    ++ +  +     L  VP +
Sbjct: 509 GLGIRYVGETVAKKLAKHYKNVDALLNMPAEPDKSSIDLFADVSSAADKKMEELTAVPEI 568

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQ 662
           G+ IAQ++VEF QN   +  +E L              +  + ++  K  V +G  + + 
Sbjct: 569 GESIAQSLVEFIQNEDQMAIIERLKNTGLQFALSEEQLEGQTDKLAGKSFVISGVFE-MS 627

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           R+  ++ V   G   S+ +S KTD +I GD  G SKLEKA++LG+ +++E++FL ++
Sbjct: 628 RNDLKKLVEDNGGKNSSSISSKTDYLIRGDKMGPSKLEKAEKLGITMISEQEFLAMI 684


>gi|116071920|ref|ZP_01469188.1| DNA ligase [Synechococcus sp. BL107]
 gi|116065543|gb|EAU71301.1| DNA ligase [Synechococcus sp. BL107]
          Length = 682

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/714 (29%), Positives = 347/714 (48%), Gaps = 47/714 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +  S L   ++     YY    P + D+ YD L R    +    P L  +   + P  ++
Sbjct: 6   ERASELRNLLNTAAHAYYVLDTPTMEDAVYDRLYRELLELEQTTPSLKTA---DSPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG        V H I  LSL+  ++ +DL  +  R+ R   +   + +    E KIDG  
Sbjct: 63  GGAPAEGFTNVEHRIGLLSLDNAFDRDDLNAWNERLLRAIDRPLGSPLELVSELKIDGNA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197
           + + Y  G    AA RGDG  GE+++A +R I  IP  L L N PE +E+RGE +I  N 
Sbjct: 123 LALSYRNGVLERAATRGDGQRGEEITANVRTISAIPLRLQLDNPPEWVEIRGEAFIPDNT 182

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E  + G   +ANPRNA +G LR+L+P  +  R L+FF + L   ++     Q++
Sbjct: 183 FAEINAERESRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPAQAQPSSQWD 242

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +   GF VN           I  + +  +  R  LPY  DG+V K++   LQ + G
Sbjct: 243 ALAWLENAGFRVNPNRSLCADLAEINRFSDHWEQGRHDLPYATDGVVVKLNSLVLQDEAG 302

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I+ KF  ++A +RLL + +Q+GRTG++TPVA  EPV + G  ++ ATLHN 
Sbjct: 303 FTQKSPRWAIALKFPAEEAPSRLLRVVVQVGRTGVITPVAEFEPVALAGTSVSRATLHNA 362

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+ +GD ++V++AGE+IP+VV ++   R   A P   P  CP 
Sbjct: 363 DRIAEL-----------DLHLGDTIVVRKAGEIIPEVVRVLPELRPSSATPVQLPEHCPE 411

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR+ +       AA RC    +C A     L+H+VS+ A +++GLG + ++    
Sbjct: 412 CGSNLVREGDE------AATRCVNS-SCPAILRGGLRHWVSKGALDVDGLGSKLIEQLVD 464

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +   AD++ L     +S  ++      G+ S  NL +++   R  S  R ++ 
Sbjct: 465 Q----GLVSSIADLYRLDAALLSSLDRM------GERSANNLIEALTLSRQRSWARQLYG 514

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+++   +        + N+++        S+  +  +G  +AQ++ +++
Sbjct: 515 LGIHHIGEVSAKAITAEFP-------DANSLMEAACTTPDSITAIYGIGTELAQSLQQWF 567

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKN-------VSSEIENKKLVFTGTLQKIQRHKAQEY 669
            NP N   +  L  +          +           +     V TGTL  + R +A+E 
Sbjct: 568 SNPANQQLLNDLRSQGFRFAVDENDHGHVGVAASDQHLTGLTFVLTGTLSTLSRSEAKER 627

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +   G  V+  +S+ TD ++ G+  GSKL KA  LG+ I++E     LL++   
Sbjct: 628 IEASGGKVTGSVSKNTDYLVAGEEAGSKLTKATTLGITILDEAALHDLLKKSQA 681


>gi|315445158|ref|YP_004078037.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1]
 gi|315263461|gb|ADU00203.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1]
          Length = 701

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/723 (30%), Positives = 349/723 (48%), Gaps = 47/723 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +AL  +  R+    L  E+  H   YY    PII D+E+D L RR  A+   +P+L    
Sbjct: 8   DALDPD-LRRSWQELADEVREHQFRYYIRDAPIITDAEFDQLLRRLQALEDEYPEL---R 63

Query: 70  DPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P   +GG           H    LSL+ ++++E+L  +  RI             +
Sbjct: 64  TPDSPTQLVGGAGFATDFTAAEHLERMLSLDNVFDLEELAAWAARIRTEIGA----DAQY 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEI 184
             E KIDG  + + Y  G+   AA RGDG +GEDV+   R I  IP  LS      +P +
Sbjct: 120 LCELKIDGVALALVYRDGRLERAATRGDGRTGEDVTLNARTIEDIPERLSGTNEFPLPTV 179

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL 243
           +EVRGEV+    DF  LN  ++A G+ P+ANPRN+A+G LR+ NP    R  L    HGL
Sbjct: 180 LEVRGEVFFRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGL 239

Query: 244 GKTS---EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G             ++  + ++  G PV++   Q      +          R  + ++ID
Sbjct: 240 GHVESSGGSPFPTLHDAYRALKAWGLPVSDHTAQVTGLDAVTERIAYWGEHRHDVEHEID 299

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVD  +LQ++LG  +R+PRW +++K+  ++A TRLLDI + +GRTG +TP A +EP
Sbjct: 300 GVVVKVDAVALQRRLGATSRAPRWAVAYKYPPEEAQTRLLDIRVNVGRTGRVTPFAYMEP 359

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ +  ATLHN   +K            + + +GD V++++AG+VIP+V+  +V+ 
Sbjct: 360 VKVAGSTVGLATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDL 408

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    + F FP+ CP C S +         +  A  RC    +C AQ  ER+ H   R A
Sbjct: 409 RDGSEREFVFPTHCPECGSEL-----APAKEGDADIRCPNTRSCPAQLRERVFHVAGRGA 463

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +      +S      I    D+F L       T       G    +   L  
Sbjct: 464 FDIEGLGYEAATALLQS----GVIADEGDLFGLTADDLLRTELFTTKAGELSANGKRLLA 519

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++ K +   L R + +L IRHVG   AR+LA  + S +         +A           
Sbjct: 520 NLGKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLEAIETASEEQLAGT--------- 570

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
              VG  IA A+++++    +   V+   +         + ++   +E   +V TG+L  
Sbjct: 571 -EGVGPTIAAAVIDWFTVDWHRAIVDKWREAGVRMADERDASIERTLEGLSIVVTGSLAG 629

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R +A+E +   G   +  +S+KT  ++ GD PGSK +KA +LGV +++E+ F  LL +
Sbjct: 630 FSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAIELGVPVLDEDGFRRLLAE 689

Query: 721 YNT 723
              
Sbjct: 690 GPE 692


>gi|261366975|ref|ZP_05979858.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176]
 gi|282571093|gb|EFB76628.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176]
          Length = 661

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/709 (31%), Positives = 353/709 (49%), Gaps = 51/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQA+K    L   I  ++  YY    P + D EYDAL R   AI   FPDL     P
Sbjct: 1   MEREQAQKRAEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKAIETEFPDLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P   +GG  +    KVTH++   SL+  +++E+LR F +R+     K +     + +E
Sbjct: 58  ESPTQHVGGTASSKFTKVTHAVKMESLQDAFSLEELRDFDSRVREAGIKPE-----YVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y  G+ V  + RGDG  GEDV+  +  I  IP  L  N P  +EVRGEV
Sbjct: 113 AKIDGLSVSLEYRNGRLVRGSTRGDGMVGEDVTENLATIRDIPLQL-ENAPAFLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+    F  L ++     + P+ NPRNAA+G LR+ N      R L+ FV  L +     
Sbjct: 172 YMPHAAFFKLKEQQELEDKTPFKNPRNAAAGSLRQKNAKITAERGLSIFVFNLQQCEGRS 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E L  ++ LGFPV+      ++    +     +  +R TL +DIDG V KV++ +
Sbjct: 232 FATHHETLDYIKSLGFPVSPRYSVFSSIEDAIREIQTIGELRGTLEFDIDGAVIKVNDLA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + PRW I+ K+  +   + + DI++ +GRTG+LTP A  +PV + G  ++ 
Sbjct: 292 ARRVLGSTNKFPRWAIAFKYPPEVKESVVRDIEVTVGRTGVLTPTAVFDPVFLAGTSVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D I  L            + +GD + V++AG++IP+V+ +  +   PD++PF  
Sbjct: 352 ASLHNGDIISSL-----------GVGIGDTIQVRKAGDIIPEVIAV--SAHGPDSKPFMM 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + VV   +        A RC     C AQ L  L HF SRDA  I+GLG+  
Sbjct: 399 PTVCPSCGAPVVHLQDET------ALRCVNP-ECPAQSLRNLIHFASRDAMAIDGLGEAV 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                +       +   AD+++L   Q  +  K      F   S  NL  +I   +  +L
Sbjct: 452 AIQLTEKN----LVHTVADLYSLNEEQLLTLDK------FKKKSAQNLLTAIEHSKTNNL 501

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ +F LGIR++G + A  LA+++ S +          A  +     +  V   G ++AQ
Sbjct: 502 DKLLFGLGIRNIGDKAAALLAEHFGSME----------AIRSAGVEQMCEVDGFGAVMAQ 551

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ EF+        + A L++   ++        + +  K LV TGTL  + R +A+  +
Sbjct: 552 SVREFFDKEGTSDLL-ARLEKAGVNMQWTGTPKGTALAGKTLVVTGTLPTLSRQEAEALI 610

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            Q G   S  +S+KT  ++ G   GSKL KAQ LG+ +++E     L+Q
Sbjct: 611 VQNGGKASGSVSKKTSYVVAGTAAGSKLTKAQALGIPVIDEAGLYALIQ 659


>gi|86608809|ref|YP_477571.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123724461|sp|Q2JLU3|DNLJ_SYNJB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86557351|gb|ABD02308.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 686

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/705 (33%), Positives = 370/705 (52%), Gaps = 56/705 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +    L   +      YY +  PI+ DS YD L R    +  A+P+L     P+ P 
Sbjct: 4   KLEERARELRTLLQKASIAYYVHDAPILEDSVYDRLYRELQELERAYPELV---TPDSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD------DNSIFFT 129
            ++G +       V H IP  SLE  +N E+L ++  R+ R   +        +  + + 
Sbjct: 61  QRVGEKPAEHFPTVFHRIPLYSLENAFNPEELEEWQERLLRVLGRAPVPDSRTEGELEYV 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            E KIDG  + + Y +G     A RGDG +GED++  +RAI +IP  L + + P ++EVR
Sbjct: 121 CELKIDGAALALTYIEGLLERGATRGDGQAGEDITPNVRAIRSIPLRLATADPPPVLEVR 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---- 243
           GEVY++  +F  +N E  + G  P+ANPRN A+G LR+L+   +  R L+FF + L    
Sbjct: 181 GEVYLALAEFERINQERRSAGDPPFANPRNCAAGTLRQLDSRVVAARKLSFFAYALHWPE 240

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G  +    + Q++ LQ+++ LGFPVN   +       ++ +Y   +   + LPY  DG+V
Sbjct: 241 GWPAGDPPQTQWQCLQQLKELGFPVNPLSQVCRGLGEVIQFYERWRG--AQLPYASDGVV 298

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K++   LQ++ G   + PRW I+ K+  ++  TR+  I   +GRTG +TPVA LEPV +
Sbjct: 299 VKLNSLRLQEEAGFTQKFPRWAIALKYPAQEVPTRIRAIVASVGRTGAVTPVAELEPVPL 358

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G L++ A+LHN D ++ L           D+ +GD  +V++AGE+IP+VV I+   R  
Sbjct: 359 AGTLVSRASLHNADRLREL-----------DVHIGDTAIVRKAGEIIPEVVGILKELRPA 407

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA P+S PS CP C + +VR          A  RC     C A+   +L+H+ SRDA +I
Sbjct: 408 DAVPYSLPSQCPECHTPLVRPPGE------AVTRCPNP-ECPAKLRGQLQHWASRDALDI 460

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG+++     +S      +R  AD++ L   Q           G G  S   L  +I 
Sbjct: 461 EGLGEKRAAQLVES----LGVRTVADLYRLTPEQLQGLE------GMGSRSSQKLVQAIQ 510

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + R    ER ++ LGI HVG   A+ LA ++ + +  AQ     IA          ++  
Sbjct: 511 RSRQQPWERVLYGLGIPHVGVVTAQILAGHFPTPELLAQASAETIA----------QIYG 560

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662
           +G  +A+A+V ++  P +   ++ L     P++ + E   VS  +  KK V TGTL  + 
Sbjct: 561 IGAEVAEAVVAWFAEPAHRRLLQELQALGIPALPQQENPAVSQILAGKKFVITGTLPTLS 620

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           R +A+ ++   G  V+A +SR+TD ++VG +PGSKLE+AQQLG+ 
Sbjct: 621 RQQAKAWIESRGGKVTASVSRQTDYVVVGSDPGSKLEQAQQLGIP 665


>gi|310826558|ref|YP_003958915.1| DNA ligase [Eubacterium limosum KIST612]
 gi|308738292|gb|ADO35952.1| DNA ligase [Eubacterium limosum KIST612]
          Length = 666

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/707 (33%), Positives = 376/707 (53%), Gaps = 50/707 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++QA  ++S L+++I  ++  YY    P+I D  YD + +   ++  A+P    S   + 
Sbjct: 5   LKQAEAKISQLKKQIEENNVRYYDKDAPVIPDYAYDRMMQELISLETAYPQFLTS---DS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG  + +  KV ++ P LSL   +N  DLR F TRI +         + + +E K
Sbjct: 62  PSQRVGGAPSEAFEKVHYTTPKLSLSNAFNAGDLRDFDTRIRKVCP-----DVAYCVEHK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  + + YE G  V  + RGDG +GE+V+  ++ + TIP  L+   P  +EVRGEV I
Sbjct: 117 FDGLTVVLDYENGLLVRGSTRGDGVTGENVTQNLKTVKTIPLRLTE--PMTLEVRGEVLI 174

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K DF  LN      G   +ANPRNAA+G +R+L+P     R L+ FV  L        +
Sbjct: 175 YKEDFEELNAAREEQGEPLFANPRNAAAGSIRQLDPKLAAERPLDIFVFNLEYCENRSFE 234

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI-RSTLPYDIDGLVYKVDEFSL 311
              E    +   GF  +  V+       I++Y  EM+   R  LPY+IDG+V KV+  + 
Sbjct: 235 THKESFDFLTHCGFKTSE-VKLYKDMEDIITYIEEMEHGGREALPYEIDGMVIKVNNLAE 293

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG+ ++SPRW I++KF+ +Q  T + DI +Q+GRTG LTPVA LEPV + G++I+ A
Sbjct: 294 RERLGDTSKSPRWAIAYKFSPEQTVTTVRDITVQVGRTGALTPVAELEPVLLAGSVISRA 353

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNEDYI             +DIR+GDRV++++AG+VIP+V   I  +R      F+ P
Sbjct: 354 TLHNEDYI-----------IDKDIRIGDRVVIQKAGDVIPEVDHSIPEDRTGAEVVFTMP 402

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S   R          A  +C   + C AQ   ++ HF SRDA NI+G+G   +
Sbjct: 403 AHCPVCGSETYRVPGE------AVTKCLN-MDCPAQVFRKIVHFASRDAMNIDGMGPAVV 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                +E     I    DI+ +  R+      +  +   G+ SV NL ++I   ++  L 
Sbjct: 456 RQLLDNE----LIHTIVDIYHVSDRR----EDLTGLEKMGEKSVDNLINAIEDSKSRPLS 507

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F+LGI  VGA  A+ LA ++ S     +     +            +  +G  +A  
Sbjct: 508 KVVFALGIPLVGANGAKILASHFGSMDALMEASEEEL----------TEIYDIGGKMAVE 557

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IV+F++   N   V+  L+E   ++  +    ++E+  K  V TGTL  + R +A+E + 
Sbjct: 558 IVDFFKTDANRRIVD-GLREAGVNMTENTARATAELAGKTFVLTGTLPTMGRREAKEILE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             GA VS  +S+KTD ++ G+NPGSK EKA  L V +++EE F  ++
Sbjct: 617 SHGAKVSGSVSKKTDYVLAGENPGSKAEKAMSLDVPVIDEETFKKMV 663


>gi|269792727|ref|YP_003317631.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100362|gb|ACZ19349.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 673

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/713 (31%), Positives = 362/713 (50%), Gaps = 50/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    AR  +  L + I +HD  YYQ + P I D EYDAL R    +  +FPDL     P
Sbjct: 1   MDRSAARSRMEELAELIRHHDRLYYQENSPEITDQEYDALFRELVDLERSFPDLRL---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +  ++ HS P LSL+   + E++  F+ R+Y         S     E
Sbjct: 58  DSPTLRVSGSPSEAFKRLPHSEPMLSLDNAVSREEVSDFLRRLYDALG----GSAPVVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +++ Y  G  +    RGDG  GEDV++ +  I  +P+ +  +    +EVRGEV
Sbjct: 114 PKLDGLAVSLLYRGGVLIRGLTRGDGSVGEDVTSNVMTIRDLPKRI--DYMGELEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+S+ DF ALN      G  P+ANPRNAA+G LR+L+P     R L+ F++ +    E+ 
Sbjct: 172 YMSRRDFAALNQRREEEGLPPFANPRNAAAGSLRQLDPRVTAQRNLSCFLYHVVNHREVG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E+L  ++   FPV    R       ++ Y ++    R + P D DG+V K+D   
Sbjct: 232 LKTQEELLLWLKGRSFPVQEDFRLCRDPEEVLEYLDDWDRRRHSYPADTDGVVIKLDSLE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   RSPRW ++ KF  ++  TR+L I++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 GREVLGSTNRSPRWAVAFKFPPEERPTRVLSIEVSVGRTGVVTPTAVLEPVRLSGTEVRR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D +             +D+RVGD V V++AGE+IP+V+ + +  R     PF  
Sbjct: 352 ASLHNFDELAR-----------KDVRVGDTVWVRKAGEIIPEVIRVDLGLRPEGTAPFVP 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C SR+VR           A RC    +C AQ  ER+ HF SRD  ++ GLG++ 
Sbjct: 401 PEGCPSCGSRLVRLPGE------VAIRCINP-SCPAQMKERIIHFASRDGMDVRGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                        ++  AD+F L            ++   G+ S +NL  +++  R+  L
Sbjct: 454 ASQLVDRGM----VKDLADLFFLT------MEDWLSLDRMGERSASNLVRALDVARDRPL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + I++LGI  VG   A+ LA  +   +         +A           V  VG ++A+
Sbjct: 504 RKLIYALGIPGVGERTAQDLADRFGRLEALMDASEEELA----------SVEGVGPVVAR 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ +F++N   +  V  L                  +E  + VFTG L  ++R +AQ+ V
Sbjct: 554 SVRDFFRNDSTVRLVRRLRDAGVRM--EERPTAGGPLEGMRFVFTGELGSMRRKEAQDLV 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +LG  VS  +S+    ++ G+  GSKL +A+ LGV I +E++FL L++++  
Sbjct: 612 IRLGGKVSDSVSKGVTALVAGEGGGSKLSRARALGVPIWSEDRFLELVREHTD 664


>gi|298484007|ref|ZP_07002176.1| DNA ligase, NAD-dependent [Bacteroides sp. D22]
 gi|298269788|gb|EFI11380.1| DNA ligase, NAD-dependent [Bacteroides sp. D22]
          Length = 666

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/710 (32%), Positives = 362/710 (50%), Gaps = 53/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+    +D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +              E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKALN----EDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  LN E  A     +ANPRNAASG L+  N + +  R L+ +++ L     +   G
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDG 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK
Sbjct: 234 HYENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQK 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+L
Sbjct: 294 NLGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432
           HN D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F  
Sbjct: 354 HNADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIV 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D
Sbjct: 403 NCPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVD 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F++       I   AD++ L         ++      G+ S  N+   I + + +  ER
Sbjct: 457 MFYR----LGLIENTADLYKLTADDIKGLDRM------GEKSAENIVTGIAQSKTVPFER 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I
Sbjct: 507 VIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEY 669
           + ++ N  N   V  L KE    + R E+++S    ++  + +V +G      R + +E 
Sbjct: 557 LAYFANESNRELVNRL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKEL 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + + G      +S KT  I+ GDN G +KLEK ++LG+ I++E++FL L+
Sbjct: 616 IEKNGGKNVGSISAKTSFILAGDNMGPAKLEKVKKLGITILSEDEFLKLI 665


>gi|116493340|ref|YP_805075.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745]
 gi|122265196|sp|Q03DT9|DNLJ_PEDPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116103490|gb|ABJ68633.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745]
          Length = 675

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/716 (31%), Positives = 378/716 (52%), Gaps = 51/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E + +E+A K   +L + +      YY    P + D EYD       A+  AFP++   
Sbjct: 7   LEEMQVEEASKLAQNLREILDRWSKLYYTKDAPEVEDYEYDEKYADLVALEEAFPEIITQ 66

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+     KVTH+ P LS+  +++ ++L +F  RI +       + + +
Sbjct: 67  ---DSITQRVGGEILEGFTKVTHTEPMLSMGDVFSRDELVEFDNRIQKNVG----HPVDY 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  I++ Y+ G+ +  + RGDG+ GED++  ++ I ++P+ L+   P  IEVR
Sbjct: 120 NVELKIDGLAISLIYQDGELIQGSTRGDGNIGEDITKNLKTIKSVPQKLT--RPLSIEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE ++ K  F  LN + +  G+  +ANPRNAA+G LR+LN      R L+ F++ +  ++
Sbjct: 178 GECFMPKASFAKLNAQQLEDGKPVFANPRNAAAGSLRQLNTNVTKKRDLDTFIYTVVDSN 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           ++ AK Q++ +Q M  LGF  N           +  Y  + +  R  LPY IDG+V KV+
Sbjct: 238 QLGAKTQHQAIQMMAELGFNTNPTQEVCANLDEVWDYIAKYEGQREDLPYGIDGIVLKVN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + SLQ++LG   + PRW I++KF  ++A+T + DI+  +GRTG++TP A ++PV + G  
Sbjct: 298 DLSLQQELGHTVKIPRWEIAYKFPPEEAATVVRDIEWTVGRTGVVTPTAVMDPVQLAGTT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATL+N D +             +D+ +GD VL+ +AG++IP++  +++ +R      
Sbjct: 358 VSRATLNNVDQLTA-----------KDVHIGDTVLLHKAGDIIPEITRVVLEKRPVGISE 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP C   +V            A RC     C AQ + RL+HF SR+A NI GLG
Sbjct: 407 LDIPTHCPSCGKELVHLNGE------VALRCINP-DCPAQIVARLEHFGSRNAMNIMGLG 459

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +Q+   +        I    D++ L       + ++  + GF +  V NL ++I+  R 
Sbjct: 460 PKQIQQLYAKN----FIHHFDDLYKLT------SEELSQLDGFKEKRVNNLLEAIDNSRK 509

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLER I  LGI+ VG ++AR+LA+ + +  N  Q                  V  +G+ 
Sbjct: 510 NSLERLINGLGIQGVGTKMARTLAEKFGTMDNLMQTT----------IEEFDAVDTIGET 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRH 664
           +A  +  F+Q+      ++ L            K   S     + KK+V TG L++  R+
Sbjct: 560 LANNLATFFQSDVAQNMIDELKAVGVNMEYLGVKPAESPDGYYKGKKVVLTGKLEQYTRN 619

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +E +  LGA V+  +S+KTDI+I G + GSKL KAQ LG++I++E + +   +Q
Sbjct: 620 ELKERLISLGADVAGSVSKKTDILIAGADAGSKLTKAQALGIEILDETEAIAKFEQ 675


>gi|94971682|ref|YP_593730.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis
           Ellin345]
 gi|122986011|sp|Q1IHJ4|DNLJ_ACIBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94553732|gb|ABF43656.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis
           Ellin345]
          Length = 673

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/711 (32%), Positives = 358/711 (50%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K+   L +++ YH+  YY    P I D++YD +     A+    P+L     P+ P  +
Sbjct: 8   AKQAEDLREKLRYHEHRYYVLDDPEISDADYDVMMNELKALEAKHPELL---TPDSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+      KV HS P LSL+  +N E+LR +  R+     K     I +  E K+DG 
Sbjct: 65  VGGKPREGFVKVAHSAPMLSLDNAYNEEELRDWARRVEELSGK---AEIEYECELKLDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------RVLSLNIPEIIEVRGEV 191
            + +RY+  +FV A  RGDG  GEDV+  +R + ++P       +   ++    EVRGEV
Sbjct: 122 SMALRYQDARFVLAVTRGDGSIGEDVTLNLRTVKSVPLGVSSATLKKTHMLGDFEVRGEV 181

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
                 F  +N++    G   +ANPRNAA+G +R L P     R L+F+ + L     + 
Sbjct: 182 IFPTKSFEKMNEDREKQGLAKFANPRNAAAGAVRVLEPNITAQRRLDFYAYFLLVDGRVH 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E L  +  LGF VN+      +   ++ + ++ +  R  LPY+IDG+V KV+  +
Sbjct: 242 IDRQSEALDTLEKLGFKVNSNRAVFKSIDDVLKFIHKKEEDREKLPYEIDGVVIKVNSTA 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L ++LG   ++PRW I++K+A + A T++ DI +Q+GRTG LTPVA L+PV IGG  ++ 
Sbjct: 302 LWQRLGFTGKAPRWAIAYKYAARAAVTQVEDILVQVGRTGKLTPVAALKPVPIGGTTVSR 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFS 429
           ATLHN D I  L            + +GD V V+R G+VIPKVV +I ++ HP   + F 
Sbjct: 362 ATLHNMDEIDRL-----------GLLIGDWVQVERGGDVIPKVVKVIDDKDHPRGKKKFK 410

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   VVR          A HRC     C A+  E + HF SR   NIEG+G  
Sbjct: 411 MPERCPECGGHVVRTEGE------ADHRCVNA-NCPAKLRESILHFASRGVMNIEGMGDS 463

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++           ++  ADI+ L   +  S  ++      G  S  N+ D I   + + 
Sbjct: 464 LVNQLVDR----GLVKNVADIYELDEEKLLSLERM------GKKSAQNILDEIKGTKKLP 513

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER I+ LGIR VG   A+ LA+++ S     +     +    +           G  IA
Sbjct: 514 LERVIYGLGIRMVGERTAQFLAEHFGSLDGVMKATEEELLEVEEV----------GPRIA 563

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q+I EF+  P N   V+ L        G  ++   + +  +  V TG+L    R +A++ 
Sbjct: 564 QSIHEFFAEPSNRELVKRLEAAGLQFKGVKKER-GTALAGQTFVLTGSLPTYSRDEAKKL 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G  VS  +S+KT+ ++ G+  GSKL+KA+ LGV +++E+    LL +
Sbjct: 623 IEDAGGKVSGSVSKKTNYVVAGEEAGSKLDKARDLGVAVIDEDALKKLLGK 673


>gi|85374270|ref|YP_458332.1| DNA ligase [Erythrobacter litoralis HTCC2594]
 gi|123409617|sp|Q2N9V6|DNLJ_ERYLH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84787353|gb|ABC63535.1| DNA ligase [Erythrobacter litoralis HTCC2594]
          Length = 736

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/765 (36%), Positives = 407/765 (53%), Gaps = 84/765 (10%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E LS  +A  EL  L ++I+ HD  Y+    P I D EYDAL RR   +  AFP L R 
Sbjct: 5   LENLSEAEAANELMRLARQIAKHDRLYHAEDAPEITDQEYDALVRRNAELEAAFPHLVRE 64

Query: 69  EDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              + P  K+G  +  S L KVTH +  +SL+  +  E++ +F+ R+ R+    +D +I 
Sbjct: 65  ---DSPSRKVGHAVAASPLSKVTHEVRMMSLDNAFADEEVAEFVARVRRYLNIGEDEAIA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-------- 179
           FT E KIDG   ++RYE GK V AA RGDG  GEDV+  +  I  IP+ L+         
Sbjct: 122 FTAEDKIDGLSCSLRYENGKLVRAATRGDGQVGEDVTPNVAHIGDIPQELTPLPLAGGAG 181

Query: 180 -----------------------NIPEIIEVRGEVYISKNDFLALNDE-----MIAVGRK 211
                                  N P + E+RGEVY++  DF ALN             K
Sbjct: 182 GGPLDDSGSAPTPDPSRRREGKWNGPAVFEIRGEVYMATADFHALNARLMDEARAEADEK 241

Query: 212 ----------PYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQYEMLQ 259
                      +ANPRNAA+G LR+ + +   TR L F+ HG G    ++  + Q E+++
Sbjct: 242 DNAFDTAKVRQFANPRNAAAGSLRQKDASVTATRPLRFWAHGWGAVEGDVPGETQVEVVE 301

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           ++   G PV+   R+  T   ++++Y  + + R+ LPY+IDG+VYKVD    Q++LG  A
Sbjct: 302 QIAAWGVPVSPLFRRCETLEEMLAHYEAIGAQRADLPYEIDGVVYKVDRLDYQQRLGFVA 361

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++PRW I+ KF  +QA T L +IDIQ+GRTG LTPV RL PV +GG  +TN TLHN D I
Sbjct: 362 KAPRWAIARKFPAEQAETTLENIDIQVGRTGKLTPVGRLAPVLVGGVTVTNVTLHNRDEI 421

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV--NERHPDAQPFSFPSFCPIC 437
           + L            +R GDRV+V+RAG+VIP+VV  +    +R      F FP  CP C
Sbjct: 422 ERL-----------GVRPGDRVVVQRAGDVIPQVVRNLTPDEKRDS----FEFPDTCPEC 466

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S  V +      +     RCTGGL C AQ+ ERLKHFVSR A +I+GLG++ +D FF  
Sbjct: 467 GSEAVSE------EGGVDVRCTGGLICPAQRTERLKHFVSRAALDIDGLGEKTIDQFF-- 518

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +  PADIF L+ R+         + G+ D SV NL  S+  RR     R +  L
Sbjct: 519 --ALGWLESPADIFRLKDRRDEILA----LEGWMDKSVDNLLASVEARREPDTARLLLGL 572

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA  AR L KY+       +      A + +  ++L  +  +G  + +A+ +F+ 
Sbjct: 573 GIRHVGAVTARDLMKYFHELPALRETAEKARAGDEEAVVALTSIDGIGSAVVEALGDFFH 632

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              N    + LL EVSP     E  + S +  K +VFTG L+ + R +A+    +LGA  
Sbjct: 633 EEHNRAVWDDLLSEVSPPRYEVET-LDSPVAGKTVVFTGKLETMSRDEAKAQAERLGAKA 691

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           S  +S KTD+++ G   GSKL+KAQ LG+++++E  +  ++    
Sbjct: 692 SGSVSAKTDLLVAGPGAGSKLKKAQDLGIEVIDEAGWAEIVAAAG 736


>gi|295426520|ref|ZP_06819170.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM
           11664]
 gi|295063888|gb|EFG54846.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM
           11664]
          Length = 669

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/717 (30%), Positives = 373/717 (52%), Gaps = 54/717 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++++QA+ E+++L +++    + YY    P + D+ YD    R   +   FP+L   
Sbjct: 1   MADITLDQAKTEVAALRKQLDEWAEAYYSKDAPEVEDNVYDQKYNRLLELEKDFPELV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++ E+LR+F  RI +       + + +
Sbjct: 59  -TPDSITQRVGGKIDTKFTKVAHPIPMLSMGDVFSKEELREFDQRIQKQVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ G+ + A+ RG+G  GEDV+A  R I  IP+ L    P  IEVR
Sbjct: 114 NVELKIDGLSLSLEYQNGRLMRASTRGNGQVGEDVTANARFIRDIPQTLPK--PLTIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+SK  F  LN E    G++ +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMSKEAFAKLNAERDENGKEVFANPRNAAAGSLRQLDAKVTKKRDLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +++M  LGF  N   R+  T   I  + +E  + R +LPY IDG+V KVD
Sbjct: 232 E-GITSQHQAIEEMHKLGFHTNQTGRKLETLDEIFDFIDEYTAKRDSLPYCIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  ++++LG   + PRW I++KF  ++  T + DI+  +GRTG++TP A ++PV + G  
Sbjct: 291 DLGIEQELGSTVKVPRWEIAYKFPPEEQETVVRDIEWTVGRTGVVTPTAVMDPVQLAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A LHN D +K            +D+R+GD V + +AG++IP++ ++++++R  D++P
Sbjct: 351 VARAVLHNPDLLK-----------EKDVRIGDTVKLHKAGDIIPEISEVVLSKRPADSKP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C  ++V            A RC    +C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPTTCPSCGQKLVHLKGE------VALRCINP-SCPAQLEEGIIHFASRQAMNIAGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +      +     +   AD++ L             +  F + S+ NL  +I+K + 
Sbjct: 453 PKIVKQLIAKD----LVHNVADLYHLTPDDLM------QLDHFKEKSINNLLTAIDKSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +  LGI HVGA++AR +++ + +                 D   +  +  +G  
Sbjct: 503 NSVELLLTGLGIDHVGAKVARLISQKFKNLPKIMAA----------DVQEVAAIDTIGPT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           IA+++  ++  P     +E L +               +   +  +NK +V TG L    
Sbjct: 553 IAESLTTYFAQPAVQKLIEELEESGLNMDYLGQDETEAEIADNFFKNKTVVLTGKLAHYT 612

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +  + +  LGA V+  +S KTD +I G + GSK  KAQ LGV  + EE+ +  ++
Sbjct: 613 RSEFTKRLQSLGAKVTGSVSHKTDYVIYGKDAGSKFTKAQSLGVPTLTEEEAIAQIK 669


>gi|226365931|ref|YP_002783714.1| NAD-dependent DNA ligase LigA [Rhodococcus opacus B4]
 gi|254781403|sp|C1B1S4|DNLJ_RHOOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226244421|dbj|BAH54769.1| NAD(+)-dependent DNA ligase [Rhodococcus opacus B4]
          Length = 697

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/730 (30%), Positives = 366/730 (50%), Gaps = 44/730 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           + +    P  A      R+  + L +++  H   YY    PII D E+DAL    + + +
Sbjct: 2   VSESTEAPTPA--PGSVREHWNELAEDVRQHQFRYYVRDAPIISDGEFDALLGELNDLEN 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +PDL     P+ P   +GG          H    LSL+ ++  ++LR +I+R+    ++
Sbjct: 60  QYPDL---RTPDSPTQLVGGGFATDFASADHLERMLSLDNVFATDELRTWISRV----EQ 112

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--- 177
           +    + +  E KIDG  + + YE G+ V AA RGDG +GE+V+   R I  IP  L   
Sbjct: 113 ETGPDLHYLCEVKIDGVALNLVYENGRLVRAATRGDGRTGEEVTLNARTIDDIPEKLTGT 172

Query: 178 -SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY- 235
               IP ++EVRGEV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP    R  
Sbjct: 173 DKYPIPALLEVRGEVFFRLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRR 232

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L    HGLG++       QY+    +   G PV+    +      +V         R  +
Sbjct: 233 LGMICHGLGRSEGFEPASQYDAYTALAAWGLPVSTHTVRVTGADAVVDRVQYWGEHRHDV 292

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            ++IDGLV KVDE SLQ++LG  +R+PRW I++K+  ++A+T+LLDI + +GRTG +TP 
Sbjct: 293 EHEIDGLVVKVDETSLQRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPF 352

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A +EPV + G+ ++ ATLHN   +K            + + +GD V++++AG+VIP+V+ 
Sbjct: 353 AYMEPVTVAGSTVSLATLHNGSEVKR-----------KGVLIGDTVVLRKAGDVIPEVLG 401

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            +V+ R  D   F  P+ CP C + +         +  A  RC     C AQ  ER+ H 
Sbjct: 402 PVVDARTGDEYEFVMPANCPECDTPL-----APAKEGDADIRCPNQQYCPAQLRERVFHV 456

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
             R AF+IE LG +      +++    +I    D+F+L       TT      G    + 
Sbjct: 457 AGRGAFDIEVLGYEAATSLLEAK----AIGDEGDLFSLTEDDLLKTTLFRTKAGGLSANG 512

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
             L D+++  ++  L R + +L IRHVG   AR+LA  + S     +     +A      
Sbjct: 513 RRLLDNLDSAKDKPLWRVLVALSIRHVGPTAARALAGEFGSLDRIRESSVEELAA----- 567

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
                V  VG  IA A+ E++    +   V+             ++++   +E   +V T
Sbjct: 568 -----VDGVGGTIAAAVAEWFGVDWHRQIVDKWSAAGVRMEDERDESIPRNLEGLSIVVT 622

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G+L+   R +A+E +   G   +  +S+KT  ++ G++PGSK +KA +LGV +++E+ F 
Sbjct: 623 GSLETFSRDQAKEAILVRGGKAAGSVSKKTAFVVAGESPGSKHDKAVELGVPVLDEDGFR 682

Query: 716 FLLQQYNTTL 725
            LL+     +
Sbjct: 683 RLLEGGPDAV 692


>gi|160914436|ref|ZP_02076651.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991]
 gi|158433594|gb|EDP11883.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991]
          Length = 664

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/700 (32%), Positives = 361/700 (51%), Gaps = 47/700 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L + +      YY   KP + D EYD   +    +   FP      DPN    +
Sbjct: 3   QQRILELRKILDRLAYEYYVLDKPSVSDQEYDRYYQELLKLEDEFPQY---RDPNSITQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +  KV+H    LSL+  +N+EDL  F  R+ +  +  +     + +E K+DG 
Sbjct: 60  VGGVVLDAFEKVSHKRRMLSLDNAFNLEDLMAFDERVRQSVKNPE-----YVVELKMDGL 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G+FV A  RGDG  GEDV+  +R I +IP  +  ++   +EVRGEV + K  
Sbjct: 115 AISLHYHNGRFVQAVTRGDGLVGEDVTNNVRTIASIPMHI--DMEGDLEVRGEVIMPKKS 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN++    G + +ANPRNAA+G +R+L+      R L+ +++      +       E
Sbjct: 173 FEALNEQRRKQGEEEFANPRNAAAGSIRQLDSRIAASRKLDAYLYYFEGAQQHAMHTHEE 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +  +   VN   +       +  +  EM   R+ LPY+IDG+V KV++      LG
Sbjct: 233 ALEALEAMRIKVNPLRKVCKNMQEVWQFIQEMSERRNDLPYEIDGMVLKVNDLHAWDLLG 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++PR+ I++KF  ++  T+LLDI + +GRTG +TP A LEPV + G  ++ ATLHNE
Sbjct: 293 TTAKAPRYAIAYKFPAEEVVTKLLDIVLSVGRTGRITPNAVLEPVRVAGTTVSAATLHNE 352

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK            +D+R+ D V++++AG++IP+VV  +   R+     + FP  CP 
Sbjct: 353 DMIK-----------EKDVRINDDVIIRKAGDIIPEVVRSLPERRNGTQGIYKFPQICPF 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S++VR  +       AAH C     C A+ +  + HF SRDA NI+ LG ++++FF K
Sbjct: 402 CGSKLVRFADE------AAHYCMN-QDCPARIVRGMIHFASRDAMNIDTLGDKKIEFFHK 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +    DI+ L   ++        + GF + S   +  +I   +   LE  +F 
Sbjct: 455 Q----GFLNTIEDIYELSLHKEEILA----LEGFQEKSFQKMILAIEASKERPLEDLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG + AR LAK Y +  +        +            +  +G + AQ+I  ++
Sbjct: 507 LGIREVGKKAARVLAKTYGNIDDLMAAEEAELTA----------IKDIGVVTAQSIRAYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             P+N   +  L           E    S    K +V TGTLQ ++R++A+  + +LGA 
Sbjct: 557 AEPKNKELIAHLKGFGLRMDTDKEVIKESIFTGKTVVLTGTLQYLKRNEAKALLERLGAN 616

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           VS  +S+KTD++I G+  GSKL KA++LGV  M+EE F+ 
Sbjct: 617 VSGSVSKKTDLVIYGEASGSKLSKAKELGVATMDEEAFMK 656


>gi|148240764|ref|YP_001226151.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 7803]
 gi|166216252|sp|A5GPI9|DNLJ_SYNPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147849303|emb|CAK24854.1| NAD-dependent DNA ligase [Synechococcus sp. WH 7803]
          Length = 698

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/735 (30%), Positives = 364/735 (49%), Gaps = 57/735 (7%)

Query: 12  LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +SI Q  ++  + L Q ++     YY    P + DS YD L R    +  A P+L  +  
Sbjct: 1   MSIPQGLQERAAELRQLLNRAAHAYYVLDAPDLEDSVYDRLYRELLDLEAAHPELVEA-- 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NS 125
            + P  ++GG        VTH IP  SL+  ++ E+LR + TR+ +   ++        +
Sbjct: 59  -DSPTQRVGGSPAEGFRSVTHRIPLFSLDNAFSAEELRGWYTRLLKVLDREPPSGSPLPA 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EI 184
           +    E KIDG  + + Y+ G  V AA RGDG  GED++A +R I +IP  L L+ P   
Sbjct: 118 LAMVGELKIDGNALALSYDNGVLVRAATRGDGDQGEDITANVRTIASIPLRLHLDPPPAW 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +EVRGE  I  N F A+N E  A     +ANPRNA +G LR+L+P  +  R L+FF + L
Sbjct: 178 VEVRGEALIPDNTFAAINSERAARDEPLFANPRNACAGTLRQLDPKVVAARRLDFFAYTL 237

Query: 244 GKTSEIF---AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
               +        Q+E L+ +   GF VN           +  ++ +  S R  L Y  D
Sbjct: 238 HLPEDWSGERPTSQWESLRWLEDAGFRVNPNAALLPDVDSVEQFFGDWDSRRHDLNYATD 297

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+++  LQ   G   ++PRW I+ K+  ++A +RLL +  Q+GRTG++TPVA  EP
Sbjct: 298 GVVVKLNDLRLQDAAGFTQKAPRWAIALKYPAEEAPSRLLKLTCQVGRTGVVTPVAEFEP 357

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V++ G  ++ ATLHN D ++ L           D+  GD ++V++AGE+IP+V+ ++   
Sbjct: 358 VSLAGTSVSRATLHNADRLQEL-----------DLHSGDTIIVRKAGEIIPEVLRVLPEL 406

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R   A P   P  CP C S +VR+         AA RC    +C A     L+H+VS+ A
Sbjct: 407 RPEGALPLELPQQCPSCGSDLVRESGE------AATRCVNS-SCPAILSGALRHWVSKGA 459

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +++GLG + ++   +       +R  AD++ L     TS  ++      G+ S  NL  
Sbjct: 460 LDVDGLGSKLIEQLVER----GLVRSIADLYRLDTALLTSLERM------GEKSAGNLVA 509

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++ + R     R ++ LGI HVG   A++LA  +        + +++         ++  
Sbjct: 510 ALAQSRTQPWSRQLYGLGIHHVGEVNAKALASAF-------ADAHSLADAAVQRPEAITD 562

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--------SEIENKKL 652
           +  +G  IAQ++ +++    N   ++ L           ++  +          +  +  
Sbjct: 563 LHGIGPEIAQSLQQWFNTSANQDLLQQLRAVGLTLAASDQERQALADRNNGKGHLNGQTF 622

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R +AQ  +   G  VS  +S+KT  ++ GD  GSKL+KA  LGV +++E 
Sbjct: 623 VLTGTLPSLSRSQAQALIEGAGGKVSGSVSKKTSFVVAGDEAGSKLDKANTLGVSVLDEA 682

Query: 713 QFLFLLQQYNTTLRI 727
             + L+Q    T+ +
Sbjct: 683 ALMLLIQNSADTIHL 697


>gi|149372321|ref|ZP_01891509.1| putative DNA ligase [unidentified eubacterium SCB49]
 gi|149354711|gb|EDM43274.1| putative DNA ligase [unidentified eubacterium SCB49]
          Length = 677

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/721 (30%), Positives = 364/721 (50%), Gaps = 61/721 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              +++  L +E+  ++  YY      + D E+D   +    +  A P+     D N P 
Sbjct: 2   NIEQQIKELREELRAYNYQYYVLDNATVSDFEFDQKLKELQQLEDAHPEYF---DANSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE+  +   V H+    SL+  ++ EDL  + TR+ +      D  + +  E K D
Sbjct: 59  QRVGGEITKNFETVKHNFRMYSLDNSYSKEDLEDWETRVKKMV----DGDVNYACELKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YEKG  V A  RGDG  G++V+A ++ I ++P  L  + PE+ E+RGE+ +  
Sbjct: 115 GASMSLTYEKGVLVRAVTRGDGFQGDNVTANVKTIKSVPLQLKGDYPELFEIRGEIVLPF 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
           + F A+N+E IA G +PY NPRN ASG L+  +  ++  R L+  ++ L   +++    Q
Sbjct: 175 DGFNAMNEERIAAGEEPYRNPRNTASGSLKLQDSAEVAKRPLDCLLYSLV-ANKLPVATQ 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+K    GF V    + A++   ++ + N     R  LPY+ DG+V KV+    Q++
Sbjct: 234 MEGLKKASDWGFKVPPVAKLASSIEEVLEFVNYWDKHRHELPYETDGVVVKVNSLQQQEE 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW +++KF  +Q ST L +I  Q+GRTG +TPVA L+PV + G  +  A+LH
Sbjct: 294 LGYTSKSPRWAMAYKFKAEQVSTVLEEITYQVGRTGAITPVANLQPVELAGTTVKRASLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L           DIR  D V V++ GE+IPK++ + + ER  D+QP  + S C
Sbjct: 354 NADQIEKL-----------DIRERDTVYVEKGGEIIPKIIGVNLEERPEDSQPTKYISQC 402

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +VR       +  A H C     CS Q + R++HF+SR A +IEGLG + +   
Sbjct: 403 PDCHTALVRT------EGDAKHYCPNEEGCSTQIIGRIQHFISRKAMDIEGLGGETVALL 456

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    I+  AD++ L         ++         S  NL + ++K + I  ER +
Sbjct: 457 VNE----GVIKNYADLYALTVEDILPLERMAQ------KSAENLVEGVSKSKEIPFERVL 506

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ LAK++ S     +            +  LI V  +GD IA++++ 
Sbjct: 507 FALGIRFVGETVAKKLAKHFKSIDALMEA----------SFEQLIAVDEIGDRIAESVLA 556

Query: 615 FY------------QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQK 660
           F+            Q   +   VE L           E+       +     V +G   K
Sbjct: 557 FFKIETQDLFSEIKQGETHREVVERLRAYGVQLAISEEELAGQTDTLAGSTFVVSGVFAK 616

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R + ++ +   G  VS  +S+KT  ++ GD  G SK  KA++LGV I+ E+ FL ++ 
Sbjct: 617 VSRTELKKLIEDNGGKVSGSISKKTSYVVAGDKMGPSKRTKAEELGVVIITEDDFLAMIA 676

Query: 720 Q 720
           +
Sbjct: 677 K 677


>gi|312194886|ref|YP_004014947.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c]
 gi|311226222|gb|ADP79077.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c]
          Length = 755

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/716 (31%), Positives = 349/716 (48%), Gaps = 61/716 (8%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +  H   YY  + P + D+EYD L R   A+   +P L     P+ P  K+    +    
Sbjct: 44  LDEHAYRYYVLAAPTVSDAEYDVLYRELVALEERYPAL---RTPDSPTQKVTETPSELFE 100

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            VTH    LSL+  ++ ++ + +  R  +     + +   +  E KIDG  + + YE G 
Sbjct: 101 PVTHLERLLSLDNAFDEDEFQAWAARATK-----ETSVAAWLCELKIDGLAVDLVYEDGV 155

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMI 206
            V AA RGDG  GED++A IR + ++P  L   N+P ++EVRGEV+     F+ALN+ ++
Sbjct: 156 LVRAATRGDGRVGEDITANIRTLRSVPARLRGPNVPALLEVRGEVFFPVAAFVALNESLV 215

Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
           A G+KPYANPRN A+G LR+ +P    +R L  +VHGLG         Q    + +  LG
Sbjct: 216 ADGKKPYANPRNTAAGSLRQKDPQVTASRGLAMYVHGLGARRGFDPPSQSAAYEALAELG 275

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            P++   R       +++Y  E    R  + ++IDG+V KVD+ + Q +LG  +++PRW 
Sbjct: 276 LPISPRYRVVGDVDAVLAYIREWGEHRHDVEHEIDGVVVKVDDLATQGRLGATSKAPRWA 335

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I++K+  ++ +TRL  I++ +GRTG +TP   LEPV + G+ +  ATLHN D +K     
Sbjct: 336 IAYKYPPEEVTTRLKSIEVNVGRTGRVTPFGVLEPVTVAGSTVGLATLHNADQVKA---- 391

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  + + +GD +++++AG+VIP++V  +V+ R    + F FP+ CP C + +VR  
Sbjct: 392 -------KGVLIGDMIILRKAGDVIPEIVGPVVDLRDGTEREFVFPTHCPECGTELVRPE 444

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RC   + C AQ+ E + H  SR A +I+GLG +      +    A  ++
Sbjct: 445 GE------ADTRCPNTVGCPAQRREAIIHLASRGALDIDGLGGESAIDLIE----AGRVK 494

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGD--------------------VSVTNLYDSINKR 545
             AD+F L  R  T     E I    D                         +   I   
Sbjct: 495 DIADVFHLDERSFTGMPLFERIETVRDENGKLVKGPDGKALRRSVLGKKAEQVLKGIEAA 554

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R+  L R +  L IRHVG   A++LA+   S           +A           V  VG
Sbjct: 555 RHRPLWRLLVGLSIRHVGPSAAQALARELRSTDAIRAASLEELAV----------VDGVG 604

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             IA A+VE++ +PR++  VE L                  +    +V TG+L+   R  
Sbjct: 605 PTIAAAVVEWFADPRHLDLVERLRAGGVTLADEGADEGPRPLAGVTVVITGSLEGYTRDS 664

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           A E V  LG  VS  +S+KT  +I G+N G+K +KA  L V I++E     LL + 
Sbjct: 665 ATEAVQNLGGKVSGSVSKKTSFVIAGENAGTKYDKAVSLKVPILDEAGLRVLLTEG 720


>gi|225851368|ref|YP_002731602.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
 gi|254781385|sp|C0QSF6|DNLJ_PERMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225645574|gb|ACO03760.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
          Length = 714

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/721 (36%), Positives = 384/721 (53%), Gaps = 56/721 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + E A   +  L   I YHD  YY  + P+I D EYD L      I   FP+L     P+
Sbjct: 27  TKEDAEAIIEDLRDVIRYHDWRYYVLANPVISDYEYDQLFHLLKDIESRFPELI---TPD 83

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++  E+     +V H  P LSL+  +N EDLR+F  R+         + I + +EP
Sbjct: 84  SPTQRVPSELTKEFPQVKHLAPMLSLDNSYNEEDLREFDRRVREAVG---IDIIEYAVEP 140

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGE 190
           K DG  I++ YEK  FV  A RGDG  GED++  IR I T+P     ++   + IE+RGE
Sbjct: 141 KFDGAGISLVYEKDMFVRGATRGDGVVGEDITPNIRVIKTVPLSAEFSVYGIDRIEIRGE 200

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           V I+K  F  +N + +  G  P ANPRNAA+G LR  +P ++  R L  FV+ +    + 
Sbjct: 201 VLINKEKFKEINHQRLEEGLPPLANPRNAAAGSLRLQDPKEVAKRGLEAFVYQITYAVDK 260

Query: 250 FAKG--------QYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
                        Y+ ++ +  LGF      ++       ++ Y  E +  R   PY+ID
Sbjct: 261 DGNNLLGNKLRYHYDSIKILYELGFKSPYKEIKVCRGIDEVIDYCREWERKRDDYPYEID 320

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KV++ SL  +LG  +  PRW I+ KF  +QA+T+++ +  Q+GRTG +TPVA+LEP
Sbjct: 321 GMVIKVNDISLYDRLGVTSHHPRWAIAFKFRARQATTKIIKVVFQVGRTGAVTPVAKLEP 380

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V IGG  +++ +L NED+IK            +DIRVGD VL++RAG+VIP VV ++   
Sbjct: 381 VEIGGVTVSSVSLINEDFIK-----------EKDIRVGDLVLIERAGDVIPYVVKVVTEA 429

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    +P  FP  CP C S +V+          A  RC   + C AQ +ER+ +F S+DA
Sbjct: 430 RTGKEKPIQFPKECPSCGSPLVKPAGE------AVWRCIN-INCPAQVVERIIYFASKDA 482

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I GLG+  +  F++       +R   DI+ L         KI  + GFG  SV NL  
Sbjct: 483 MDIRGLGEANIRKFYQ----LGFLRSIPDIYRLP------YDKIIQLEGFGQKSVENLKK 532

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I + +N  + R I  LGIR VG   AR+LA+           IN +    +     L R
Sbjct: 533 AIEESKNRPINRLITGLGIRFVGKVTARTLAEN----------INCVEDLKDWSVEDLER 582

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +P VG ++A +I +F+ NP NI  ++ L +    +    E+ V +  E K  VFTGTL  
Sbjct: 583 LPDVGYVVAHSIYDFFHNPDNIKMIQELKRLGVQTCKEKEEVVENIFEGKTFVFTGTLSC 642

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R  AQE V +LG   S+ +SRKT  ++VG+NPGSK  KA  LGV+I++E+QF+ +++ 
Sbjct: 643 CSREIAQEIVERLGGHASSSVSRKTSYVVVGENPGSKYRKALSLGVQILDEKQFIEMIKD 702

Query: 721 Y 721
           +
Sbjct: 703 H 703


>gi|118581474|ref|YP_902724.1| DNA ligase, NAD-dependent [Pelobacter propionicus DSM 2379]
 gi|166216225|sp|A1ATJ6|DNLJ_PELPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118504184|gb|ABL00667.1| DNA ligase, NAD-dependent [Pelobacter propionicus DSM 2379]
          Length = 704

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/729 (37%), Positives = 416/729 (57%), Gaps = 46/729 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKP---IILDSEYDALKRRCDAIAHAFPD 64
           P    +     + +  L Q I++++  YY  + P    I D EYD L +    +   FP+
Sbjct: 5   PTTEQTKNIVAERIQELRQLIAHNNRLYY-ENIPPRREIHDYEYDELFKELQELESRFPE 63

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK---IWNIEDLRKFITRIYRFWQKK 121
               +  + P   +GG ++    KV HS+P LS+E       + ++R  I  +       
Sbjct: 64  F---QSADSPTQIVGGSVSEGFKKVQHSVPMLSIENKPVTKMLSEVRSIIKELKD----- 115

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
           D  SI    EPKIDG   +IRYEK + V AA RGDG  GED++  + +I  IP++L L+ 
Sbjct: 116 DAISIDIVAEPKIDGLSCSIRYEKHQLVRAATRGDGLEGEDITVNVHSISEIPKILPLDA 175

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
           PE+IE+RGEVY+S +DF     +   +G KP  NPRNAA+G LR+L+P+   +R L FF 
Sbjct: 176 PEVIEIRGEVYMSNSDFKQYTAQQNKIGEKPPENPRNAAAGSLRQLDPSVTASRPLRFFA 235

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           +  G+ S  FAK Q++ LQ +R  GF V + +R   +   + SY+ EM+  RS L + ID
Sbjct: 236 YAWGEISNSFAKSQWDALQTLRGWGFKVCDDIRLLYSSDELNSYFEEMQERRSELDFTID 295

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYK++  SLQ+++G+  R+PRW  + KF  ++  T L +I I +GR+G LTPVA L P
Sbjct: 296 GIVYKLNSLSLQERVGQTNRAPRWAAAQKFPPEKRETLLQNITISVGRSGALTPVAELLP 355

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G  ++NATLHN+D ++            +D R+ D ++V+RAG+VIP+VV +++ +
Sbjct: 356 VRLLGTTVSNATLHNQDEVEC-----------KDFRIDDTIVVQRAGDVIPQVVSVVIEK 404

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R   + PF FPS CP+C S+ VR+         A  +CTGGL C AQ LERLKHFVSRDA
Sbjct: 405 RLSGSIPFVFPSACPVCGSKAVREPRE------AVWKCTGGLTCPAQSLERLKHFVSRDA 458

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE---------NILGFG 531
           FNI+GLG++ ++ F+        +  P DIF L+          +            G+G
Sbjct: 459 FNIDGLGEKNIELFYNK----GLLASPVDIFRLEEILSPPLLWQQKPSEFKPLQEWDGWG 514

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           ++S  NL+ +I  ++ I+L RFI++LGI  VG   A+ LA  Y+S  N+   +       
Sbjct: 515 ELSANNLFRAIRTKQKITLYRFIYALGIPKVGEVTAKILADNYVSLDNWQSSMLKAAERE 574

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
           ++ +  LI +  +G ++A  IV F+    NI  +++L   +S         +SS I  K 
Sbjct: 575 SECYQHLISIDGIGSVVADEIVSFFAEAHNIQVLDSLKNYLSVEDFTKPAIISSNISGKI 634

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +VFTG L+K  R  A+    + GA V+  +SRKTDI+I G +PGSKL KAQ+LG+KI++E
Sbjct: 635 VVFTGELEKRSRKAAKIEAEKFGAKVATDVSRKTDIVIAGTDPGSKLRKAQELGIKILSE 694

Query: 712 EQFLFLLQQ 720
           +++  L+ +
Sbjct: 695 DEWEHLINE 703


>gi|300783591|ref|YP_003763882.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
 gi|299793105|gb|ADJ43480.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
          Length = 726

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/718 (30%), Positives = 351/718 (48%), Gaps = 43/718 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R+  S+L +E+  H   YY    PII D ++D L      +  A P L     P  
Sbjct: 27  PADVRERHSALAEELRDHQFRYYVLDSPIISDGQFDELLGELQRLEDAHPALV---TPES 83

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG  +       H    LSL+ ++  ++   ++ R+ +   + +     F  E K
Sbjct: 84  PTQRVGGTFSTEFTAHDHLERMLSLDNVFAEDEFLAWVERVEKEVGRTE-----FLAELK 138

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRG 189
           IDG  I + YE G    A  RGDG +GEDV+  +R +  +P+ L+      +P ++EVRG
Sbjct: 139 IDGLAINLLYENGHLTRALTRGDGRTGEDVTLNVRTLDQVPQTLTGTDQFPVPALVEVRG 198

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           EV+    DFL LN +M+  G+ PYANPRN A+G LR+ +P     R L    HGLGK + 
Sbjct: 199 EVFFRVEDFLELNAKMVEAGKPPYANPRNTAAGSLRQKDPKITRERRLRLICHGLGKRAG 258

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q E    +   G PV+   +   +   + ++       R    ++IDG+V KVD+
Sbjct: 259 FEPQRQSEAYDALAAWGLPVSPHSKVLTSADELTAHIAYWGEHRHDAEHEIDGVVIKVDQ 318

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +R+PRW I++K+  ++A T LLDI + +GRTG +TP A  EPV + G+ +
Sbjct: 319 VALQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVGVGRTGRVTPFAVTEPVTVAGSTV 378

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN++ +K            + + +GDR+++++AG+VIP+V+  +V+ R  D + F
Sbjct: 379 SRATLHNQEEVKR-----------KGVLIGDRIVIRKAGDVIPEVLGPVVDARTGDEREF 427

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C + +         +     RC     C AQ  ERL H   R AF+IE LG 
Sbjct: 428 VMPTHCPECGTEL-----AYQKEGDKDIRCPNTRFCPAQLRERLFHLAGRGAFDIEVLGY 482

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +           A  +    D+F L               G    +   L  +++  ++ 
Sbjct: 483 EAAVALLD----ARVVADEGDVFDLNEDSLAEVELFRTKAGELSANARKLLSNLDAAKDR 538

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L + + +L IRHVG   A++LA+ + S +   Q     ++           V  VG  I
Sbjct: 539 PLWKVLVALSIRHVGPTAAQALAREFGSIERIEQATEEELSA----------VDGVGPTI 588

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A A  E++    +   VE   +         ++++   +E   +V TG+L    R +A+E
Sbjct: 589 AHATQEWFDVAWHREIVEKWRRAGVRMEEARDESIPRHLEGLSIVVTGSLDGFSRDEAKE 648

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            V   G   +  +S+KT  ++VGD+PGSK +KA QL V +++E  F  LL+Q     R
Sbjct: 649 VVMARGGKAAGSVSKKTAFVVVGDSPGSKYDKAVQLKVPVLDEAGFRVLLEQGPDAAR 706


>gi|134102614|ref|YP_001108275.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004701|ref|ZP_06562674.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL
           2338]
 gi|166216238|sp|A4FMS5|DNLJ_SACEN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|133915237|emb|CAM05350.1| DNA ligase, NAD-dependent [Saccharopolyspora erythraea NRRL 2338]
          Length = 727

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/713 (30%), Positives = 351/713 (49%), Gaps = 42/713 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R+  + L +++  H   YY    P I D E+D L      +    P L    DP+ 
Sbjct: 40  PAGVRERYADLVEQVRAHQFRYYVLDSPTISDGEFDELFTELQTLESDHPAL---RDPDS 96

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +GG  +     V H    LSL+  ++ ++LR ++ R+ R           +  E K
Sbjct: 97  PTQVVGGTFSTDFTAVDHLERMLSLDNAFDPDELRAWVERVEREVGSSAH----YLCELK 152

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRG 189
           IDG  I + Y  GK   A  RGDG +GEDV+  +R +  +P  L+      +P ++E+RG
Sbjct: 153 IDGLAINLLYRDGKLERALTRGDGRTGEDVTLNVRTMDDVPDQLTGTDEYPVPALVEIRG 212

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           EV+   ++F  LN  ++  G+ P+ANPRN+A+G LR+ +P    +R L    HGLGK   
Sbjct: 213 EVFFRVDEFAQLNASLVEAGKPPFANPRNSAAGSLRQKDPRVTKSRPLRMICHGLGKREG 272

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q E    +R  G  V+   +  +T   ++ + +     R++  ++IDG+V KVDE
Sbjct: 273 FEPKQQSESYAALRAWGLRVSPHTKVLSTVDEVLEHIDYWGKHRNSAEHEIDGVVVKVDE 332

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ++LG  +R+PRW I++K+  +QA+TRLLDI + +GRTG +TP A +EPV + G+ +
Sbjct: 333 VSLQRRLGATSRAPRWSIAYKYPPEQATTRLLDIQVAVGRTGRVTPYAVMEPVKVAGSTV 392

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN D ++            + + +GDRV++++AG+VIP+V+  +V+ R    + F
Sbjct: 393 ARATLHNADQVR-----------HKGVLIGDRVVIRKAGDVIPEVLGPVVDVRDGSEREF 441

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C + +         +     RC     C  Q+ ERL     R AF+IE LG 
Sbjct: 442 VMPTECPDCGTALAHQK-----EGDVDLRCPNSHNCIGQRRERLFQLAGRKAFDIEVLGY 496

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +         A  +    D+F L       TT      G   V+   L  ++   +  
Sbjct: 497 EGVSALLS----AGVVFDEGDLFDLNEEALLKTTLFRTDDGSLSVNGGKLLANLESAKQQ 552

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R + +L IRHVG   AR LA+ + S     +     +A              VG  I
Sbjct: 553 PLWRVLVALSIRHVGPIAARVLAREFGSLDRIQEASEEELAAG----------EGVGPTI 602

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A A+ E++    +   V    +         ++++   +    +V TG+L+   R +A+E
Sbjct: 603 ATAVREWFDVDWHREIVRKWSEAGVRMADERDESIERHLTGLSIVVTGSLEGFSRDEAKE 662

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            +   G   +  +S+KT  ++VG++PGSK +KA Q+ V +++E+ F  LL+Q 
Sbjct: 663 LIMARGGRAAGSVSKKTAFVVVGESPGSKYDKAVQMKVPVLDEDGFRVLLEQG 715


>gi|303247047|ref|ZP_07333322.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
 gi|302491473|gb|EFL51358.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
          Length = 693

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/730 (33%), Positives = 372/730 (50%), Gaps = 60/730 (8%)

Query: 12  LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +S E+ A   L  L  +I  HD  YY    P+I D+ YDAL R    +  A P+L   +D
Sbjct: 1   MSEEKDAAARLRELRAQIHEHDYRYYVLDDPVIEDAAYDALYRELRKLETAHPEL---DD 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFT 129
           PN P  ++GG +  +     H +   SL+   + E+ R F+TR     +++    +  F 
Sbjct: 58  PNSPTKRVGGTVLPAFVSKPHRLAMYSLDNAMSEEEWRDFVTRAANKLEREGQPFTRTFW 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-------LNIP 182
           ++PK DG  + I YE G +  A  RGDG  GEDV+  +R +  +P  L        L +P
Sbjct: 118 VDPKFDGLALEIIYENGVYAGALTRGDGEVGEDVTENVRTVKNVPLDLRPHAVRANLPVP 177

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            ++EVRGEV +++ DF  LN+     G K +ANPRNAA+G +R+L+     +R L FF +
Sbjct: 178 ALLEVRGEVVMTRQDFYELNERQREQGGKIFANPRNAAAGSVRQLDSKISASRPLTFFAY 237

Query: 242 GLGKTSEIFAK----GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            +G      A         ++  +  LG PV    + A     +  Y+  M   R  LP+
Sbjct: 238 AIGAQDWAGADPGWTTHSGIMAGLGKLGLPVAREGKVA-GEDAVYPYFKTMGVRRPDLPF 296

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KVD  + Q+ LG   R+PR+ I+ KF   +A T L  I++Q+GRTG+LTPVA 
Sbjct: 297 EIDGVVVKVDSLADQEALGFTGRAPRFAIALKFPAHEAETVLKRIEVQVGRTGVLTPVAI 356

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV++ G  ++ ATLHNED IK            +D+R GD V+V+RAG+VIP+VV ++
Sbjct: 357 LEPVSLAGVTVSRATLHNEDEIKA-----------KDLRAGDTVVVRRAGDVIPEVVRVV 405

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
             +R  DA+PF FP  CP C S  VR          AA RC   LAC A     + +FVS
Sbjct: 406 PEKRPADAEPFPFPHICPSCHSPAVRAPGE------AAWRCVN-LACPAMLRRGIAYFVS 458

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           +   +IEG+G + +            ++ PAD+F L         ++       + S  N
Sbjct: 459 KSGLDIEGIGNKWVKTLIDKGM----VKTPADLFNLTEMDLIPMERMA------EKSAAN 508

Query: 538 LYDSINKRRNI-SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
              ++ K +   +L + I +LG+R VG   AR+LA+++      A   +  +        
Sbjct: 509 FVAAVEKAQQNATLAKLIAALGMRQVGTRTARTLAEHFRDLDGLAAATSEDLTA------ 562

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLV 653
               +P +G  +A +I EF+ N  N   +E   +     +   +  V    + +  KK +
Sbjct: 563 ----LPDIGPEVAGSIREFFDNAANRELIERFRQIGLWPVSEPKTAVPPEATPLGGKKFL 618

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTGTL  + R KA+  V   G  V   +S+K D ++VG +PGSKL KAQ LG+ I++ E 
Sbjct: 619 FTGTLPGMSREKAEALVEAAGGRVMKSISKKLDYLVVGADPGSKLAKAQSLGITILDAEA 678

Query: 714 FLFLLQQYNT 723
           F  LL + N 
Sbjct: 679 FQELLGEENA 688


>gi|89054995|ref|YP_510446.1| DNA ligase, NAD-dependent [Jannaschia sp. CCS1]
 gi|123401112|sp|Q28PE1|DNLJ_JANSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|88864544|gb|ABD55421.1| DNA ligase NAD-dependent [Jannaschia sp. CCS1]
          Length = 752

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/748 (38%), Positives = 435/748 (58%), Gaps = 56/748 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S + A+  L+ L + +S  +  Y+    P + D++YDALKR   AI  AFPDL R+   +
Sbjct: 16  SADAAKTRLAELAKRLSDANTAYHAADAPDLSDADYDALKRENAAIEAAFPDLKRA---D 72

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P +++G        K+TH+   LSL   ++  D+  F+  I R+     +  + FT EP
Sbjct: 73  SPSDQVGAAPAEGFSKLTHTQRMLSLANAFDAGDVPDFVAGIRRYLNLGAEADLPFTAEP 132

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +++RYE G+ V AA RGDG  GE+V+A  R I  IP+ L+ + P+++EVRGEVY
Sbjct: 133 KIDGLSLSLRYEDGQLVSAATRGDGAIGENVTANARTIDDIPQTLT-DAPDVLEVRGEVY 191

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251
           +S  DF ALND     G K +ANPRNAA+G LR+L+ +   +R L FF +  G+ S   A
Sbjct: 192 MSHADFAALNDRQAEAGAKTFANPRNAAAGSLRQLDASITRSRPLRFFAYAWGEVSAPLA 251

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   L  ++ LGF +N+  +  ++   ++++Y  ++  R+ L YDIDG+VYK+D+   
Sbjct: 252 ATQSGALNTLKTLGFQINDRTKTCHSAEDMLAHYASIEQDRADLGYDIDGVVYKIDDLDY 311

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +GG +++NA
Sbjct: 312 QRRLGMRSTTPRWAIAHKFPAELAWTTLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNA 371

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNEDYI G DA+G  +R G+DIRVGDRV V RAG+VIPKV D+ + +R  +   ++FP
Sbjct: 372 TLHNEDYIAGRDANGGPIRDGKDIRVGDRVQVYRAGDVIPKVADVDLAKRPENTAKYAFP 431

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP CQS  +R+      +  A  RCTGGL C AQ +E+LKHFVSR AF+I+GLG +Q+
Sbjct: 432 DHCPQCQSEAIRE------EGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAKQV 485

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+        I  PADIF L+        ++ N  G+G+ S T+L+++I+ +R+I+L 
Sbjct: 486 EAFYLD----GWIAEPADIFRLKENYGEGMKQLRNREGWGEKSATSLFNAIDDKRSIALH 541

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594
           R IF+LGIRHVG   A  LA+++ +++  A+ ++                          
Sbjct: 542 RLIFALGIRHVGEVAASDLARHFTTWKALAEIVDQAAPAAEAHRRAEDAVLAERKAAADE 601

Query: 595 ------------------------WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
                                   W  L  +  +G  +A ++V  +Q  R   +++ L+ 
Sbjct: 602 GRRASLQPQRDKAWADTPEPAKAAWDDLTGIDGIGATVAVSLVTTFQQARERASIDRLIT 661

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           E++       +   S +    +VFTG L+++ R +A+     +GA VS  +S KTDI++ 
Sbjct: 662 ELTDIQPPEARATQSAVAGLTVVFTGALERMTRAEAKARAEAMGAKVSGSVSAKTDIVVA 721

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G   GSK +KA+ LG++++ EEQ+L  +
Sbjct: 722 GPGAGSKEKKAKDLGIELLTEEQWLDRI 749


>gi|325297787|ref|YP_004257704.1| DNA ligase [Bacteroides salanitronis DSM 18170]
 gi|324317340|gb|ADY35231.1| DNA ligase [Bacteroides salanitronis DSM 18170]
          Length = 667

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/707 (32%), Positives = 360/707 (50%), Gaps = 50/707 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P+I D E+D L R    +    P+     DPN P  ++
Sbjct: 5   ERIDQLREELHLHNYKYYVENAPVISDQEFDHLMRELQDLEARHPE---HYDPNSPSVRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  RI +              E K DGT 
Sbjct: 62  GSDINKNFVQVEHRYPMLSLGNTYSQAEVTEFYERIAKALN----EDFEICCELKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           I++ YE GK V A  RGDG  G+DV+  ++ I  IP VL     P   E+RGEV +    
Sbjct: 118 ISLTYENGKLVRAVTRGDGVRGDDVTDNVKTIRAIPLVLHGDGYPRQFEMRGEVLMPWKV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E        +ANPRNAASG L+  N  ++  R L+ +++ +     +   G YE
Sbjct: 178 FEELNRERELREEPLFANPRNAASGTLKLQNSAEVAARKLDSYLYYM-LGENLPHDGHYE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ+    GF V++  R+  T   I  + N     R  LP   DG+V KV+    Q+ LG
Sbjct: 237 NLQEAARWGFKVSHVTRKVKTLQEIFDFINYWDVERKNLPVATDGIVLKVNSLRQQRNLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++A TRLL +  Q+GRTG +TPVA LEPV + G ++  A+LHN 
Sbjct: 297 YTAKSPRWAIAYKFQAERALTRLLKVTYQVGRTGAVTPVANLEPVQLAGTVVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+ +GD V V++ GE+IPK+  + V  R   ++  +F + CP 
Sbjct: 357 DIIASL-----------DLHIGDNVYVEKGGEIIPKITGVDVASRPEGSEKVTFITHCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR  +       AA+ CT   +C  Q   +++HF+SR A NIEGLG + +D F++
Sbjct: 406 CGSPLVRYEDE------AAYYCTNESSCPPQIKGKIEHFISRRAMNIEGLGPETVDQFYQ 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++TL+        ++      G+ S  N+   I + R +  ER +F+
Sbjct: 460 E----GLIHDVADLYTLKAEDLVRLERM------GEKSAENIIQGIARSREVPYERVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ +A+ + S +  A    + + H          V  +G+ IA +I+ ++
Sbjct: 510 LGIRFVGETVAKKVARAFRSIEALATATLDDLIH----------VDEIGEKIAGSILRYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            + +N   +E L           E       +++ K +V +G   +  R + +E + + G
Sbjct: 560 ADEKNRNLIERLRTAGLKLEADEEDLAGHTDKLQGKSIVISGVFARHSRDEYKEMIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
                 +S+KT  I+ G+N G SKLEKA+ L + +M E++FL ++ +
Sbjct: 620 GKNVGSISKKTSFILAGENMGPSKLEKARALNIPVMGEDEFLAMVGE 666


>gi|298372045|ref|ZP_06982035.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274949|gb|EFI16500.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058]
          Length = 670

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/715 (30%), Positives = 364/715 (50%), Gaps = 48/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     +++  L +EI  H+  YY  + P I D E+D   ++ +++  A+P+     D 
Sbjct: 1   MANTDIEQQIIKLRKEIEAHNHAYYVDNNPTISDFEFDMRLKQLESMEKAYPEYF---DK 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++G ++  S  ++ H  P LSL   ++  ++ +F  R+ +              E
Sbjct: 58  NSPTQRVGSDLTKSFKQIVHQYPMLSLANTYSEGEVTEFYNRVRKSLNT----DFDVVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++ YE G+   A  RGDG  G+DV+A IR I +IP  L  + P   E+RGEV
Sbjct: 114 LKYDGASISLIYENGELAAAVTRGDGVRGDDVTANIRTIQSIPIRLCGDFPSRFEIRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
            +    F  LN E    G   +ANPRNAASG L+  NP+++ R  L+ +++ L    E+ 
Sbjct: 174 LMPFAVFDELNREKAENGEPLFANPRNAASGTLKLQNPSEVARRRLDSYLYYL-LGEELP 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+  Y+ +   +  GF ++N +R   +   I  +     + R  LP   DG+V KV++  
Sbjct: 233 AETHYDNMMAAKTWGFKISNAIRCCRSLDEIFDFIRYWDTERRNLPVATDGIVLKVNDLR 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  A+SPRW I++K+  ++A TRL  +  Q+GRTG +TP+A LEPV + G  +  
Sbjct: 293 QQRNLGLTAKSPRWAIAYKYQAERALTRLNSVSYQVGRTGAVTPIANLEPVLLSGTTVKR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D I GL           D+ +GD V V++ GE+IPK+  +    R        F
Sbjct: 353 ASLHNADIIAGL-----------DLHIGDMVFVEKGGEIIPKITGVDTEAREAYMPKVVF 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +VR+ +       AAH C     C  Q   ++ HFVSR A +I GLG + 
Sbjct: 402 PQCCPECGSALVRNEDE------AAHYCPNEDHCPPQIKGKILHFVSRKAMDIIGLGDET 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +   ADI+ L+       + I  +   G+ S  N+ D I   + I  
Sbjct: 456 IALLFEKS----LVGNVADIYELK------ISDIAPLERLGEKSAQNIVDGIEASKQIPY 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              IF+LGIR+VG  +A+ LAK + S +   +               LI+V  +G++IA+
Sbjct: 506 PNVIFALGIRYVGETVAKRLAKAFPSIEQLEEAT----------LEQLIQVDEIGEVIAR 555

Query: 611 AIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++V+++    +   +       +  +      ++S+ +E K +V +G   K  R + ++ 
Sbjct: 556 SVVDYFAKEEHRQLISRLKAAGIRLAADEQPGHISALLEGKTVVISGVFAKHSRDEYKDM 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + Q G   S  +S KT  ++ GDN G +KL+KAQ+LG++++ E++FL ++ +   
Sbjct: 616 IEQNGGKNSGSISAKTSFVLAGDNMGPAKLDKAQKLGIRLVTEDEFLEMIAKQKD 670


>gi|170016835|ref|YP_001727754.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20]
 gi|254781358|sp|B1MXQ8|DNLJ_LEUCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169803692|gb|ACA82310.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20]
          Length = 681

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/716 (33%), Positives = 381/716 (53%), Gaps = 51/716 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P+  L+ + A++E+++L++ ++ +   YY+   P++ D  YDA   R   +   FP 
Sbjct: 4   EFTPVNNLTTQMAQQEIATLQKRLTDYGVAYYEEDAPLVEDYIYDAFYARLVLLEAQFPQ 63

Query: 65  LARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                 P+ P   +GG  +   L KV H  P LSL  ++++E+L+++  R  +    +  
Sbjct: 64  FV---TPDSPTQNVGGAKVKSGLAKVVHPAPMLSLGDVFSLEELQEWDERTTKTLGFQS- 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  + + Y  GK V A+ RG+G  GEDV+A ++ I +IP+ L+   P 
Sbjct: 120 ---EYNLELKIDGLAVALTYVDGKLVQASTRGNGSIGEDVTANVKTIRSIPQTLTE--PI 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
            IEVRGE+Y+ K+ F  LN +  A G +P+ANPRNAA+G LR+LN      R L+ FV+ 
Sbjct: 175 TIEVRGEIYMPKSSFATLNKQREADGLEPFANPRNAAAGSLRQLNVAITKKRELSAFVYY 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                 I    Q   L++   LG P ++  R   T   I +Y  E  S R  L Y IDG+
Sbjct: 235 TADPDAIGVTTQSGALERFAALGLPTDDHNRVIATMADIDAYIAEYTSQRERLAYGIDGV 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV++   Q  LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV 
Sbjct: 295 VVKVNQLDNQLDLGHTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAVMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+LHN DY+             +DIR+GD V + +AG++IP++  +++ ER 
Sbjct: 355 LAGTTVQRASLHNPDYLNA-----------KDIRIGDTVTLHKAGDIIPEIGQVLLAERP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            + Q +  P+FCP C S +V            A RC     C AQ  E+L HF SR+A N
Sbjct: 404 ANNQVYDIPTFCPACHSELVHLDGE------VALRCINPF-CVAQIQEKLTHFASRNAMN 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+G+G + +    K+      I+  A I+ LQ  Q  S  K      F + SVTNL  +I
Sbjct: 457 IDGMGPRVVSQLLKAN----YIQDVASIYRLQETQLLSLDK------FKEKSVTNLLSAI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              ++ SLER +F LGIR VGA+ AR +A+ + + Q  A              + +  + 
Sbjct: 507 TTSKSNSLERLLFGLGIRMVGAKAARLIAEKFKTLQAIADA----------SVIDIASIA 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQK 660
            +G+ IA ++V++++ P     +  L +         +  V   S    KK+V TG L+K
Sbjct: 557 GIGETIALSVVQYFKTPEAKQLLIELQEAGVNQTYLSDVIVDETSFFYGKKIVLTGKLEK 616

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             R +A +++   GA V+  +S KTD++I G++ GSKL+KA  LGV + +E+ F+ 
Sbjct: 617 GSRTEATKWLQDHGAQVTGSVSAKTDLLIAGEDAGSKLDKANALGVTVWDEQAFIE 672


>gi|332291077|ref|YP_004429686.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169163|gb|AEE18418.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5]
          Length = 664

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/711 (30%), Positives = 363/711 (51%), Gaps = 53/711 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE+   ++ +L  E+  H+  YY    P I D ++D   ++ +A+  A P+    +DP
Sbjct: 1   MTIEE---QILALRNELQSHNHSYYVLDTPTISDFDFDQKLKQLEALEAAHPEF---DDP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P +++GG +  +   + H     SL+  ++ EDL  +  R+ +      D  + +T E
Sbjct: 55  NSPTHRVGGAVTKNFETIVHENRMYSLDNSYSKEDLEDWEARVKKMV----DGEVNYTCE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++ YE G+ + A  RGDG  G+DV+  I+ I ++P  L  + PE  ++RGE+
Sbjct: 111 LKYDGASISLTYENGELLKAVTRGDGLQGDDVTTNIKTIKSVPLKLKGDYPEKFDIRGEI 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIF 250
            +    F A+N E   +G + Y NPRN ASG L+  +  ++ R  L   ++ +   + + 
Sbjct: 171 VLPWEGFHAMNAEREELGFELYRNPRNTASGSLKLQDSAEVARRPLQCLLYNI-TGNNLG 229

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q + LQK R  GF V    + A     ++ + N     R  LPY+ DG+V KV+   
Sbjct: 230 IATQMDSLQKARDWGFRVPEAAKLAKNIDEVLEFINHWDVARRDLPYETDGVVVKVNGLQ 289

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A++PRW +++KF  +Q STRL +I  Q+GRTG +TPVA LEPV + G  +  
Sbjct: 290 QQEELGYTAKAPRWAMAYKFKAEQVSTRLREITYQVGRTGAITPVANLEPVELAGTTVKR 349

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D I+ L           DIR GD V V++ GE+IPK++ + + +R  D++P ++
Sbjct: 350 ASLHNADQIERL-----------DIREGDEVFVEKGGEIIPKIIAVDLTKRPADSEPTTY 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C + +VR          A H C   + C  Q + R++H++SR A +I+GLG + 
Sbjct: 399 ITECPECSTPLVRKEGE------AQHYCPNDMGCPTQIIGRIQHYISRKAMDIDGLGGET 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            I   AD++ L   Q     ++         S  NL   +     I  
Sbjct: 453 VALLVNE----GLIVNYADLYELTVAQLLPLERMAQ------KSAENLVSGVQASVQIPF 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIR+VG  +A+ LAK+Y S           +          + V  +G  IA+
Sbjct: 503 EKVLFGLGIRYVGETVAKKLAKHYKSIDAIISATEEEL----------VAVDEIGSKIAE 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +++ F+    +I  +E L               N S ++     V +G  + + R++ ++
Sbjct: 553 SVMAFFAKAEHITLIERLRSYGVQLEISAEKLANQSDKLAGYIFVVSGVFE-MPRNELKK 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            +   G  VS+ +S KT  ++ GD  G SKLEKA+ LGV I++EE+FL L+
Sbjct: 612 LIEDNGGKVSSSISSKTTYVVAGDKMGPSKLEKAESLGVTIISEEEFLNLV 662


>gi|283779823|ref|YP_003370578.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068]
 gi|283438276|gb|ADB16718.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068]
          Length = 676

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/707 (34%), Positives = 378/707 (53%), Gaps = 48/707 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  + L +L + I  HD  YY  ++P I D EYD L +    I  +FP+L     P+ P 
Sbjct: 7   EILERLQALREAIRRHDYLYYVRAQPEISDLEYDRLMQDLTTIEASFPELV---TPDSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G E    L +V H  P LS+E  + +EDL+KF  R  +     D  ++ + +E K+D
Sbjct: 64  QRVGEEPMEGLVQVAHRAPMLSIENSYTVEDLQKFAERTSKSL---DGEAVEWVVELKVD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  I++RYE G  V A  RG+G  G+DV+  +R I  +P  L    IP ++EVRGEVY++
Sbjct: 121 GVAISVRYENGLLVQALTRGNGEVGDDVTHNVRTIADVPLRLYGDKIPAVLEVRGEVYMT 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
            +D + LN     +G++ YAN RN ASG +R L+P     R L   VHG+G    + A+ 
Sbjct: 181 NSDLVLLNKRQQELGKELYANTRNVASGTIRLLDPKLCAERKLRMLVHGVGVCEGMTAEN 240

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             + L+++  LG P     +   TF   V Y  E+      L +++DGLV KV+ F  + 
Sbjct: 241 HMQFLEQVSSLGLPPTPHCKCFATFSEAVKYCEEIPERLHELDFEVDGLVLKVNRFDQRA 300

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG+R++SPRW+I++KF + +A+T+LL I +Q+G+TG +TPVA LEPV + G  ++ A+L
Sbjct: 301 KLGQRSKSPRWVIAYKFEKYEATTKLLGISVQVGKTGAITPVAELEPVQLAGTTVSRASL 360

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I             +DIR+GD V+V++AG++IP +V +   ER  D   F FP+ 
Sbjct: 361 HNADEIVR-----------KDIRIGDIVVVEKAGKIIPHIVRVEAAERTTDLPVFQFPTH 409

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V +D      +     RCT   +C AQ  E+L+ F +R A +IEGLG + +D 
Sbjct: 410 CPVCGSDVAKD------EGGVYIRCTNP-SCPAQLREKLRFFATRGAMDIEGLGDKLVDQ 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              S+     +    D++ L   + TS  ++      G+ S T L + I   ++  L R 
Sbjct: 463 LVASK----LVTCYGDLYRLTLDKLTSLERM------GEKSATKLLEGIVASKSRPLSRL 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +  L IRH+G+  ++ LA+++ +     Q               L RV  VG+I A ++ 
Sbjct: 513 LNGLSIRHIGSNGSQVLARHFGTLDAIRQAT----------LEDLSRVSEVGEITAASVY 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVT 671
           EF  +      ++ L+     +        + E     K  V TGTL K  R + ++ + 
Sbjct: 563 EFLHSDYGKTTIDDLVALGLNTQEPKSAIPTGEGIFAGKTFVVTGTLSKFSRDEVEDLIE 622

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + G   S+ +S+KTD ++ G   GSKL KA+ LGVKI++E  F+ LL
Sbjct: 623 KHGGKASSSVSKKTDYLLAGAEAGSKLAKAESLGVKILSEADFIALL 669


>gi|225018630|ref|ZP_03707822.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
           DSM 5476]
 gi|224948624|gb|EEG29833.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
           DSM 5476]
          Length = 659

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/709 (31%), Positives = 357/709 (50%), Gaps = 51/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A+  ++ L +++ YH   YY    P I D +YDA+ R  + +   FP+L      
Sbjct: 1   MDKKDAQLRVAELTKQLHYHSHRYYVLDDPEISDFDYDAMLRELETLEAEFPEL---RSD 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG+ + S  KV H++   SL+  ++  ++  F  R+             + +E
Sbjct: 58  NSPTVRVGGQASNSFEKVAHAVQMGSLQDAFSDGEMLDFFRRVEEKIDHPV-----YVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ Y  G+F   + RGDG  GEDV+  +R I +IP  L+  +P  +EVRGEV
Sbjct: 113 PKIDGLSVSLEYRDGEFFRGSTRGDGFIGEDVTQNLRTIRSIPLKLTRPLP-YLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ ++ FL + +        P+ NPRNAA+G LR+ +P  +  R L+ +V  + +     
Sbjct: 172 FMPRDSFLKVVERQEIEEETPFKNPRNAAAGSLRQKDPKVVAERGLDIYVFNVQQIEGEE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                + L  +R LGF V            ++     +   R   P+DIDG V KVD+FS
Sbjct: 232 LTSHKQSLDLLRGLGFKVIPRYNTFEDPQQVLDEIASIGDRRGEYPFDIDGAVVKVDDFS 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG  A+ P+W ++ K+  ++  T L  ID+ +GRTG LTPVA  +P+ + G  ++ 
Sbjct: 292 EREILGAGAKYPKWAMAFKYPPEEKETVLKQIDVNVGRTGALTPVALFDPIILAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A LHN+D+I             +DIR+GD ++V++AG++IP+VV +   +    ++PF  
Sbjct: 352 AVLHNQDFIT-----------EKDIRIGDTIVVRKAGDIIPEVVSV--AKHAEQSEPFLL 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S VVR  +       AA RC     C A +L  + HF SR A NI+GLG   
Sbjct: 399 PEHCPVCGSEVVRVEDE------AAVRCENP-ECPATRLRNIIHFASRGAMNIDGLGTAN 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     +      I+  AD++ L+R       +      F D SV NL  SI K +   L
Sbjct: 452 ITALIDN----GLIKSSADLYYLKREDLLKLER------FADKSVDNLLSSIEKSKGNEL 501

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F LGIR VG  +A+ L + Y +           I            +  VG +IA 
Sbjct: 502 WRLLFGLGIRGVGQSVAKLLCEKYGNIDELMTAPAEEID----------EIYGVGGVIAH 551

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            IV+++  P +   +E   +    +          ++     V TGTL  ++R +A+  +
Sbjct: 552 NIVQYFALPHSRQLIER-FQAAGVNPTAVPVQKGDKLAGLTFVITGTLPTMKREEAKALI 610

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            Q G   +  +S+KT  ++ G+  GSKL KAQ LGV +++EEQFL ++Q
Sbjct: 611 EQNGGKATGSVSKKTSYLLAGEEAGSKLTKAQSLGVPVLDEEQFLKMIQ 659


>gi|319955749|ref|YP_004167016.1| DNA ligase [Cellulophaga algicola DSM 14237]
 gi|319424409|gb|ADV51518.1| DNA ligase [Cellulophaga algicola DSM 14237]
          Length = 666

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/708 (30%), Positives = 355/708 (50%), Gaps = 48/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           ++++++ +L   +  H+  YY    P I D ++D   +    +    P+     D   P 
Sbjct: 2   ESKQKIEALRIGLREHNYNYYVLDTPTISDYDFDMQLKELQDLEEKHPEF---YDATSPS 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +   + H     SL+  ++ EDL ++  RI R      D  + FT E K D
Sbjct: 59  LRVGGMVTKNFKTIVHDSRMYSLDNSYSKEDLEEWEKRIQRNLG---DVPVAFTCELKYD 115

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I+I YE G+ V A  RGDG  G+DV+  I+ I +IP  L  + P   ++RGE+ +  
Sbjct: 116 GASISITYENGQLVRALTRGDGFQGDDVTNNIKTIKSIPLQLKGDYPPKFDIRGEIVLPF 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  +N E I  G  PY NPRN ASG L+  +   +  R L   ++G+    +   + Q
Sbjct: 176 EGFAKMNAERIENGEDPYMNPRNTASGSLKLQDSALVAQRPLECLLYGIV-GEKTGIESQ 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++ML+K R  GF V    +   +   ++++       R  LPY+ DG+V KV+    Q++
Sbjct: 235 FQMLEKARVWGFKVPTVAQLCKSTDEVMAFVEYWDIHRHELPYETDGVVIKVNSLQYQEE 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW +++KF  +Q +T L +I  Q+GRTG +TPVA L PV + G  +  A+LH
Sbjct: 295 LGYTSKSPRWAMAYKFKAEQVATLLNEITYQVGRTGAITPVANLVPVLLAGTTVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I              DIR GD V V++ GE+IPK+V +   +R  ++ P  +   C
Sbjct: 355 NADQIAKF-----------DIREGDTVFVEKGGEIIPKIVGVDFAQRPSNSVPTKYIDHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + + R       +  A H C     C  Q   R++H++SR A +IEGLG + +   
Sbjct: 404 PECNAELER------AEGDAKHFCPNFYGCPPQITGRIQHYISRKAMDIEGLGGETVALL 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           +K +     I+  AD++TL + Q     ++         S  NL + +    +I  ER +
Sbjct: 458 YKEQ----LIKNYADLYTLTKEQVMPLERMAG------KSAENLVNGVKASVSIPFERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ LAK Y +            A        L++V  +G+ IA ++VE
Sbjct: 508 FALGIRFVGETVAKKLAKAYKNID----------ALKVASVEELVKVDEIGERIANSVVE 557

Query: 615 FYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F+QN  N   +E L              +N + E++ +  V +G  +K+ R + ++ +  
Sbjct: 558 FFQNETNQETIERLKSYGVQFELSADKLENQTEELKGQIFVVSGVFEKVSRDELKKLIED 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  V + +S KT  ++ GD  G SK  KA+ LGV I++E++FL LL 
Sbjct: 618 NGGKVGSSVSSKTTFLVAGDKMGPSKRTKAESLGVAIISEDEFLALLA 665


>gi|327402054|ref|YP_004342892.1| DNA ligase [Fluviicola taffensis DSM 16823]
 gi|327317562|gb|AEA42054.1| DNA ligase [Fluviicola taffensis DSM 16823]
          Length = 670

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/713 (32%), Positives = 365/713 (51%), Gaps = 51/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++ +A+ ++  L +E++ H+  YY  S P I D E+D L +    +   FP+LA     
Sbjct: 1   MNLSEAQLKIEQLTKELTLHNHNYYVESNPTISDYEFDVLLKELQDLETQFPELASDL-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++GG++      V H  P LSL   ++ E++ ++  R+ +         I +  E
Sbjct: 59  -SPTKRVGGDITKKFATVVHKFPMLSLSNSYSEEEIIEWEQRLKKL----ATGPIEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I IRY  GKF  A  RGDG  GED+SA ++ I TIP  L  + P+  E+RGE+
Sbjct: 114 LKYDGVAIGIRYVNGKFARAVTRGDGTKGEDISANVKTIRTIPLTLKGDYPDDFEIRGEI 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           +  K +F A+N +   +G   +ANPRN+ASG L+  +   +  R L+ F++G+    ++ 
Sbjct: 174 FFPKANFEAMNRQREELGEPVFANPRNSASGTLKSQDSKVVAERGLDCFLYGV-YGDDLL 232

Query: 251 AKGQYEMLQKMRCLGFPV----NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +   E +QK +  GF      N  +    +  GI+ + +     R  LP++IDG+V KV
Sbjct: 233 MESHLESIQKAQEWGFKTPQEKNKYILNTFSIEGIMEFIHYWDKERYNLPFEIDGIVIKV 292

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           + +  Q  LG  A+SPRW I++KF  ++ ST L ++  Q+GRTG +TPVA L PV +GG 
Sbjct: 293 NNYDQQADLGFTAKSPRWAIAYKFKAERVSTTLKEVTYQVGRTGAITPVANLIPVLLGGT 352

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++  A+LHN D I+ L           D+ + D V V++ GE+IPK+V +  + R  +A+
Sbjct: 353 VVKRASLHNADQIEKL-----------DLYLEDSVYVEKGGEIIPKIVGVQTDSRPVNAE 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              F   CP C S + R            H C   L C  Q   R++HF+SR A NI+GL
Sbjct: 402 KVIFIERCPECNSELQRREGE------VQHYCLNDLVCPPQVKGRMEHFISRKAMNIDGL 455

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D  +K           AD++ L         ++ N+    D S  NL   I   +
Sbjct: 456 GAETIDLLYKE----GLADSIADLYDLT------FDQVVNLERMADKSANNLIIGIRNSK 505

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I  ER +F+LGIR VG  +A+ LA  +          NNI A +   +  LI V  +G+
Sbjct: 506 EIPFERVLFALGIRFVGETVAKKLAYAF----------NNIDAISKATYDELIAVDEIGE 555

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            IA A+ +F+Q+ R I  +E L               S+ +E K  V +G   K  R + 
Sbjct: 556 KIAIAVQKFFQDERAIQIIERLKIAGVQFEVEEVALDSNSLEGKSFVVSGVFSKFSRDEI 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           ++ + + G      +S KT  ++ G+N G +KLEKA  LG+ I++EE F+ +L
Sbjct: 616 KDLIEKNGGKNVGSISAKTTYVLAGENMGPAKLEKASSLGIPIISEEDFIQML 668


>gi|291296053|ref|YP_003507451.1| DNA ligase NAD-dependent [Meiothermus ruber DSM 1279]
 gi|290471012|gb|ADD28431.1| DNA ligase, NAD-dependent [Meiothermus ruber DSM 1279]
          Length = 666

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/709 (32%), Positives = 361/709 (50%), Gaps = 52/709 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ +  L + I YH+  YY   KP I D+EYD L +   A+  A P+L     P+ 
Sbjct: 1   MQTPKQRIMELRELIRYHNYRYYVLDKPEISDAEYDRLLQELRALEEAHPELII---PDS 57

Query: 74  PLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P   +G  +  +    V H     SL   ++ +D+  F   I RF  +++     + LE 
Sbjct: 58  PTQTVGSAILETPFTPVPHPTRMYSLGNAFSQDDIADFEASINRFLGREESRE--YVLEY 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  + + YE+G F     RGDG +GEDV+  + AIP IPR L    P  +EVRGE+Y
Sbjct: 116 KIDGLSVNLIYEEGVFRQGLTRGDGLTGEDVTPNLLAIPDIPRQL--PQPLDLEVRGEIY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           +    FL LN ++   G  P+ NPRNAA+G LR+ +P    +R L    +G+G+   +  
Sbjct: 174 LPIQTFLELNTQLEEAGEPPFKNPRNAAAGSLRQKDPRISASRGLRGLFYGVGRPESLGV 233

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E+L+K+  LGF V+   +      GI   Y  M + R +LP++ DG+  K++  SL
Sbjct: 234 GTQQELLEKLGQLGFSVDPHYQVVRGVEGIEQGYQAMLAARKSLPFEADGVTVKLNNLSL 293

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             +LG  A++PR+ I++KF  ++ +TR+L +  Q+GRTG +TPVA LEPV + G+ ++  
Sbjct: 294 WSELGYTAKTPRFAIAYKFPAEEKTTRVLRVIFQVGRTGRVTPVAELEPVFLDGSTVSRV 353

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNE Y++ L            +R+GD VLV ++G VIP+V+ ++       A P  +P
Sbjct: 354 TLHNESYVQEL-----------GLRIGDTVLVHKSGGVIPEVLRVVTEAPRGHA-PVEWP 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +              H C   L C A+  E ++HF SR A +I+GLG++ +
Sbjct: 402 THCPECGTALE--------LSGKIHLCPNPL-CPAKAFEAIRHFASRRAMDIQGLGEKLI 452

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   ++      +R  AD++ L++    +  +        + S  NL + I   ++  LE
Sbjct: 453 EQLLET----GLVRDAADLYNLKKEDIAALERKA------EKSAQNLIEQIEASKSRGLE 502

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F+LGI  VG   AR+LAK +    +  +     +            VP + +  AQA
Sbjct: 503 RLLFALGIPQVGESTARALAKRFGHLDSILKATVEELDA----------VPDIAETTAQA 552

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           I +    P     +E L +         EK  S  +E    V TG L +  R +    + 
Sbjct: 553 IHQALARPEMQSFIERL-RAAGLVFEAREKQQSQALEGLTFVLTGELSRP-REEVARQLE 610

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             GA +S  +SRKT  +I G   GSKL KA++LG+ I++E     LL+Q
Sbjct: 611 AHGAKISGSVSRKTSYVIAGPGAGSKLSKAKELGIPILDEAGLRALLEQ 659


>gi|154492286|ref|ZP_02031912.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC
           43184]
 gi|154087511|gb|EDN86556.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC
           43184]
          Length = 666

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/710 (31%), Positives = 361/710 (50%), Gaps = 52/710 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + ++ +L + +  H+  YY  S P I D E+D + +    +  + P+ A   DP+ P  
Sbjct: 3   VKDKIKALREALEQHNYNYYVLSAPTISDREFDEMMKELQVLEESHPEYA---DPHSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +++    +V H  P LSL   ++ ++++ F  RI R              E K DG
Sbjct: 60  RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEVKDFYERIARDLN----EPFEIVAELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
           T I++ YE G+ V A  RGDG  G+DV+A ++ I ++P  L     P   E+RGE+ +  
Sbjct: 116 TSISLTYEDGRLVRAVTRGDGTRGDDVTANVKTIRSVPLKLMGDRYPATFEIRGEILLPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            +F  LN E        +ANPRNAASG L++ NP  +  R L+ + + L    E+ A+  
Sbjct: 176 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAVVAARKLDAYFYYL-LGEELPAETH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++ L+  R  GF + N +R  N+   I  Y       R  LP   DG+V KV+    Q+ 
Sbjct: 235 FDNLEAARSWGFKIPNVIRVCNSLEDIYGYIAYWDVERKNLPVATDGIVLKVNSLRQQRN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G  +  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERAVTRLNSVSFQVGRTGAVTPVANLEPVLLAGTTVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSF 433
           N D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   
Sbjct: 355 NADIIEGL-----------DLHLGDKVFVEKGGEIIPKIVGVDVEARGLLVGDKVRFIRS 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + ++R          AAH C     C  Q   +++HFV+R A NI  +G + ++ 
Sbjct: 404 CPECGTPLMRPEGE------AAHYCPNEAGCPPQIKGKIEHFVTRRAMNI-NMGPETVED 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            ++    A  I+  AD++TL+        +      + D S  NL  S+ + + +  ER 
Sbjct: 457 LYE----AGYIKDTADLYTLEIADLLRLER------WADKSARNLMASLEESKQVPFERV 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LGIR VG  +A+ L   + S +   Q            +  L  V  +G+ IA++I+
Sbjct: 507 LYGLGIRFVGETVAKRLVSAFHSMEQLEQA----------SFEDLTAVDEIGERIARSII 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            ++ + RN   V  L +         EK    S +++   +V +GT  K  R + +  + 
Sbjct: 557 AYFADERNRTLVNRLKEYGLQMSVPEEKLANRSEKLKGLSIVISGTFAKHSRDEYKAMIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           Q G   S  +S KTD I+ GDN G +KLEKA +LGVKI+NE++FL ++ +
Sbjct: 617 QHGGKNSGSVSGKTDYILAGDNMGPAKLEKAAKLGVKIINEDEFLNMIAE 666


>gi|328957928|ref|YP_004375314.1| NAD-dependent DNA ligase LigA [Carnobacterium sp. 17-4]
 gi|328674252|gb|AEB30298.1| NAD-dependent DNA ligase LigA [Carnobacterium sp. 17-4]
          Length = 645

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/688 (35%), Positives = 371/688 (53%), Gaps = 53/688 (7%)

Query: 38  YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLS 97
              P I D++YD L     A+  AFPDL  +   + P  +IGG +     KV H +P LS
Sbjct: 2   KDAPSIPDTDYDKLYNELVALEEAFPDLISN---DSPTQRIGGTILPGFEKVVHEVPMLS 58

Query: 98  LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
           L   +N  DL  F  RI +      D    +  E KIDG  +++ YEKGK V AA RGDG
Sbjct: 59  LGNAFNEGDLLDFDRRIKKI----TDQPFSYICELKIDGLAVSLTYEKGKLVRAATRGDG 114

Query: 158 HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPR 217
             GE+V+  IR + ++P  L L  P  IEVRGE Y+ K+ F+ LN E    G   +ANPR
Sbjct: 115 TVGENVTQNIRTVKSVP--LRLKNPYSIEVRGECYMPKDSFIKLNQEREENGEAIFANPR 172

Query: 218 NAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276
           NAA+G LR L+P +   R LN F++ +G   E+ A  Q + L ++  LG   N+  R   
Sbjct: 173 NAAAGGLRNLDPKETAKRNLNTFLYTIGDFGELTAVSQEDALHQLDELGLRTNHDRRVFQ 232

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
           T   + +Y  E +  R+ LPY+IDG+V KV+EF++Q+++G   ++PRW I++KF  ++A 
Sbjct: 233 TIEEVWAYTQEFQEKRTALPYEIDGIVIKVNEFAVQEEVGFTVKAPRWAIAYKFPAEEAH 292

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           T + DI+  +GRTG++TP A ++PV + G  +  A+LHNED I             RDIR
Sbjct: 293 TVIRDIEWSVGRTGVVTPTAIMDPVQLAGTTVQRASLHNEDLIH-----------ERDIR 341

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           + D V+V +AG++IP+V  +I++ER  D+QP++ P+ CP C S ++            A 
Sbjct: 342 LLDTVVVHKAGDIIPEVTRVILDERPEDSQPYAIPTHCPACDSDLIHLEEE------VAL 395

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RC     C AQ  E L HFVSR+A NI+GLG + L   F+ +     +   AD++TL   
Sbjct: 396 RCMNP-KCPAQITEGLSHFVSRNAMNIDGLGIRVLMQMFEKDM----VHDVADLYTLTFD 450

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
           Q  +  KI+      + S  NL ++I+  R+ SLER +F LGIRHVGA+ A+ +A+ + +
Sbjct: 451 QLVTLDKIK------EKSANNLLNAIDASRSNSLERLLFGLGIRHVGAKAAKLIAERFET 504

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS- 635
            +   Q   ++I         +          A+++V ++  P     ++ L        
Sbjct: 505 MEAVQQAEKDMIISIEGIGEII----------AESVVAYFSLPEVNELIQELKNSQVNMN 554

Query: 636 ----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                      V S    K +V TG L    R +A+E +  LG  V+  +S+KTD+++ G
Sbjct: 555 YLGKKKVEVATVDSYFNGKTVVLTGKLTHFTREEAKERIENLGGNVTGSVSKKTDLVVAG 614

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  GSKL KA+ L + + +E+Q L  L+
Sbjct: 615 EEAGSKLAKAESLNILVWDEDQLLETLE 642


>gi|218281363|ref|ZP_03487841.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989]
 gi|218217455|gb|EEC90993.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989]
          Length = 667

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/713 (33%), Positives = 362/713 (50%), Gaps = 47/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S+   +  +  L +E+  +   YY Y  P I D EYD L +   A+   +P+     D 
Sbjct: 1   MSMMDEKARILELRKELEKYSIEYYVYDNPSITDQEYDRLMQELMALEEKYPE---MYDA 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  +I G +     KVTH    LSL  ++N E++ +F+ RI       +     F +E
Sbjct: 58  TSPSQRIIGSVLDGFEKVTHDTQMLSLSNVFNKEEIEEFVQRISESVSNPE-----FVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + Y+ G F  A  RGDG  GEDVS  ++ I +IP  +       +EVRGEV
Sbjct: 113 CKYDGLAMALLYDDGNFTRAVTRGDGIVGEDVSNNVKTILSIPMHIPE--MRHVEVRGEV 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN      G  P+ANPRNAA+G +R+L+ +   +R L+ + +     S+  
Sbjct: 171 YMPKASFEQLNKRQEEKGLAPFANPRNAAAGSIRQLDSSICASRKLDAYWYYFQNASDFA 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q E LQ M  + F  N   +   T   I  +  E++  R  LPY+IDG+V K++  +
Sbjct: 231 VQTQEEALQAMSKMHFRTNPLRKVCTTVEQIWQFIQEIQEKREDLPYEIDGMVIKLNNLA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+ PR+  ++KF  ++  TRL DI I +GRTG +TP A LEPV + G  ++ 
Sbjct: 291 DQRRLGSTAKVPRYATAYKFPAQEVLTRLKDIVITVGRTGKITPNAVLEPVRVAGTTVSA 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A LHNED I             +D+R+GD V+V++AGE+IP+VV  +   R     P+ F
Sbjct: 351 AQLHNEDMIVN-----------KDLRIGDIVVVRKAGEIIPEVVTSVPERRDGTQVPYKF 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +VR  +       AAH C     C A+ +E + HF SRDA NI+ LG ++
Sbjct: 400 PTTCPICGSHLVRLPDE------AAHYCIN-QDCPARVVESMIHFASRDAMNIDTLGDKK 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   +       +    DI+ L R       K     G+   SV  L +SI K +   L
Sbjct: 453 IEQLHE----WGYLNSIEDIYFLDRYYDELIEK----PGYQKKSVDKLLESIEKSKKQPL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              ++ LGIR VG + A  LA+ +           + +          + +  +G I A 
Sbjct: 505 GVILYGLGIRQVGKKAAMILAEQFGDIDTLMHACVDEL----------VLIHDIGLITAS 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++V F++  +N+  ++ L +         ++ V S   NK  V TGTL+   R++A+  +
Sbjct: 555 SVVAFFKEEKNLHLIDVLKQAGCNFKQEKKQVVESRFTNKTCVLTGTLEHYTRNEAKAIL 614

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             LGA VS  +S+KTD +I G   GSKL KAQ LGV  M+EE+F+  ++    
Sbjct: 615 ESLGANVSGSVSKKTDYVIYGTAAGSKLTKAQSLGVMTMSEEEFVQEVENAKE 667


>gi|91216495|ref|ZP_01253461.1| DNA ligase [Psychroflexus torquis ATCC 700755]
 gi|91185289|gb|EAS71666.1| DNA ligase [Psychroflexus torquis ATCC 700755]
          Length = 667

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/708 (30%), Positives = 363/708 (51%), Gaps = 51/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + ++ +L QE+  H+  YY    P I D ++D        +    P+    +DPN P  
Sbjct: 3   IQDQIENLRQELHEHNYKYYVLDAPEISDYDFDMKLNALQELEKTHPEY---KDPNSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE+  +   V H  P  SL   ++ EDL  + TR+ +  +      + FT E K DG
Sbjct: 60  RVGGEVTKNFKTVVHDFPMYSLSNSYSKEDLEDWQTRVQKIIE----EPVEFTCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             I++ YE G+F+ A  RGDG  G++V+  ++ I ++P  L   N P   ++RGE+ +  
Sbjct: 116 ASISLTYEDGEFLRAVTRGDGTQGDEVTHNVKTIRSVPLKLKGDNYPRRFDIRGEIVLPY 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  +N E + +G +PYANPRN  SG L+  +  ++  R L   ++ L     +    Q
Sbjct: 176 KGFAKMNAERVELGEEPYANPRNTTSGSLKLQDSAEVAKRPLLCLLYNL-TGENLGVSTQ 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L K R  GF V    +   +   + +Y N     R  LPY+ DG+V KV+    Q++
Sbjct: 235 MESLNKSREWGFNVPKEAKLTKSIDEVFAYINYWDEHRHDLPYETDGVVIKVNSLQQQEE 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW +++KF  +Q ST L  I  Q+GRTG +TPVA L+P+ + G  +  A+LH
Sbjct: 295 LGYTAKSPRWAMAYKFKAEQVSTTLNQITYQVGRTGAITPVANLDPIQLAGTTVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSF 433
           N D I+ L           DIR GD V V++ GE+IPK++ +   +R  + +QP  +   
Sbjct: 355 NADQIEKL-----------DIREGDVVFVEKGGEIIPKIIGVDFKKRDSESSQPTVYLKE 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C++ + R          A H C     C  Q + R++HF+SR A +IEGLG + +  
Sbjct: 404 CPECETPLERKEGE------ALHFCPNTEGCPPQIIGRIQHFISRKAMDIEGLGGETVAL 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + +     I   AD++TL++       ++       + S  NL   +   ++I  ER 
Sbjct: 458 LVRED----LIEDYADLYTLRKEDVLPLERMA------EKSAVNLIKGVEASKDIPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LGIR+VG  +A+ L K + S    A          +    +L+ V  +G+ IAQ++V
Sbjct: 508 LYGLGIRYVGETVAKKLVKAFKSIDVLA----------SASLENLVAVDEIGERIAQSVV 557

Query: 614 EFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +F+++  N   ++ L              +  S+ + +  LV +G   K+ R + Q+ + 
Sbjct: 558 DFFKDDANKLRIDRLRNYGLNLEISEEEMEGQSNTLIDLTLVISGVFLKVSRRELQDLIE 617

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G   ++ +S+KTD ++ G+N G SKL KA+ LGVKI+ E++FL ++
Sbjct: 618 KHGGKNTSSISKKTDYLVAGENMGPSKLAKAENLGVKIITEDEFLTMV 665


>gi|167770441|ref|ZP_02442494.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM
           17241]
 gi|167667036|gb|EDS11166.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM
           17241]
          Length = 664

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/715 (29%), Positives = 357/715 (49%), Gaps = 53/715 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           ++  + L  E A++ +  L   I  H+  YY   +P + D EYD L      +  AFP+L
Sbjct: 1   MMDCKDL--ESAKRRVQELRTVIEKHNHSYYVLDRPTVSDYEYDRLLHELIDLEEAFPEL 58

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A       P  ++GG    +   V H +   SL+ +++  +L  F  R+    ++     
Sbjct: 59  ASDH---SPTRRVGGAALNTFAPVRHEVQMGSLQDVFDTAELEAFDARVREQIERPV--- 112

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
             + +EPKIDG  + + Y+ G F   + RGDG +GEDVS  ++ + +IP  L   +P +I
Sbjct: 113 --YIVEPKIDGLSVALEYQDGVFFRGSTRGDGVTGEDVSENLKTVRSIPMTLPEALP-LI 169

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEVY+ ++ F  +    +    +P+ NPRNAA+G LR+ +      R L+ FV  + 
Sbjct: 170 EVRGEVYMPRSSFERVVARQLENEEEPFKNPRNAAAGSLRQKDSRVTAQRGLDIFVFNIQ 229

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +       G  E L  M+ LGF V    +  +     ++    + + R   P+DIDG V 
Sbjct: 230 RIEGKTLSGHKESLDYMKSLGFKVIPSYKAFDNISDAIAEVERIGAQRYEFPFDIDGAVI 289

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+F+ ++ LG  ++ P+W ++ K+  ++  + L DI+I++GRTG LTP A  EP+ + 
Sbjct: 290 KVDDFAQREALGATSKFPKWAVAFKYPPEEKQSVLRDIEIKVGRTGALTPTAVFEPITLA 349

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A LHN+D+I             + I +GD ++V++AG++IP+VV +      PD
Sbjct: 350 GTTVSRAVLHNQDFIN-----------EKGIAIGDTIVVRKAGDIIPEVVSV--ARHQPD 396

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A  +  P+ CP C S   R+         A  RC   +AC AQ    L HF SRDA +I+
Sbjct: 397 APVYQIPAVCPSCGSTAEREEGE------AVLRCVN-MACPAQVARNLTHFASRDAMDID 449

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G   +         A  ++  AD+++L + Q  +  ++      G+ S  NL  ++ +
Sbjct: 450 GMGPAIVHQLL----AAGLVKSAADLYSLTQAQLAALERM------GERSAQNLIAALEQ 499

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++  L R +++LGIR +G   A+ LA+ + +           IA          ++   
Sbjct: 500 SKSRDLARLLYALGIRGIGQRSAQLLAQRFGTMDGVLAASVEEIA----------QIDGF 549

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G I+AQ   +F+    N   ++ L +    ++       +  +  K  V TGTL  + R 
Sbjct: 550 GGIMAQNTADFFALEPNRALIDRL-RAAGLNMACTSAPTADTLSGKIFVLTGTLPTLTRG 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+  +   G  VS  +S+KTD ++ G+  GSKL KA +LGV +++E     +L+
Sbjct: 609 EAKAMIEAAGGKVSGSVSKKTDYVVAGEEAGSKLRKAGELGVAVLDEAALRAMLE 663


>gi|224025865|ref|ZP_03644231.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM
           18228]
 gi|224019101|gb|EEF77099.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM
           18228]
          Length = 665

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/706 (32%), Positives = 362/706 (51%), Gaps = 50/706 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P+I D E+D L R    +    P+     DP  P  ++
Sbjct: 5   ERIDQLREELHRHNHNYYILNAPVISDQEFDKLMRELQDLEARHPE---HFDPTSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N    +V H  P LSL   ++ +++ +F  R+ +              E K DGT 
Sbjct: 62  GSDINKDFVQVEHKYPMLSLGNTYSEDEVTEFYERVRKSLN----EDFEICCEMKFDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           I++ YE G+ + A  RGDG  G+DV+  ++ I +IP VL     P+  E+RGE+ +    
Sbjct: 118 ISLTYEDGRLIRAVTRGDGVRGDDVTDNVKTIRSIPLVLHGTGYPKSFEIRGEILMPWTV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E        +ANPRNAASG L+  N   +  R L+ +++ L     +   G YE
Sbjct: 178 FEELNRERELREEPLFANPRNAASGTLKSQNSAVVAARRLDAYLYYL-LGDNLPCDGHYE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ+    GF ++   R+ ++   I  +       R  LP   DG+V KV+    Q+ LG
Sbjct: 237 NLQEAEKWGFKISKITRKVHSLQEIFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  +QA TRLL +  Q+GRTG +TPVA LEPV + G ++  A+LHN 
Sbjct: 297 YTAKSPRWAIAYKFQAEQALTRLLKVTYQVGRTGAVTPVANLEPVQLSGTVVRRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+ +GD V V++ GE+IPK+  + +  R   ++  +F + CP 
Sbjct: 357 DIIASL-----------DLHLGDNVYVEKGGEIIPKITGVDLASRPAGSEKVTFITHCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S++VR  +       AAH C     C  Q   +++HF+SR A NIEGLG + +D F++
Sbjct: 406 CGSKLVRYEDE------AAHYCPNETGCPPQIKGKIEHFISRRAMNIEGLGPETVDQFYQ 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++TL++       ++      GD S  N+   I K   +  ER +F+
Sbjct: 460 E----GLIHDVADLYTLRKEDICRLERM------GDKSAENIIQGIRKSTEVPYERVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ +AK + S    AQ   + + H          V  +G+ IAQ+I  ++
Sbjct: 510 LGIRFVGETVAKKVAKAFTSIDALAQATLDDLIH----------VDEIGEKIAQSIRLYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            + +N   +E L +         +       +++ + +V +G   +  R + +E + + G
Sbjct: 560 SDEKNRSLIERLQQAGLQLAAGEKDLSDHTDKLQGQSIVISGVFARHSRDEYKELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                 +SRKT  I+ G+N G SKLEKA++LG++I+NEE+FL ++ 
Sbjct: 620 GKNVGSISRKTSFILAGENMGPSKLEKAEKLGIRIVNEEEFLKMID 665


>gi|326693831|ref|ZP_08230836.1| DNA ligase, NAD-dependent [Leuconostoc argentinum KCTC 3773]
          Length = 681

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/716 (33%), Positives = 373/716 (52%), Gaps = 51/716 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  PIE LS   A++E++ L+ +++ +   YY+   P++ D  YDAL  R  A+  AFP 
Sbjct: 4   EFTPIEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAFPQ 63

Query: 65  LARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                  + P   +GG +    L KV H  P LSL  ++++E+L  +  R  +    +  
Sbjct: 64  FVTQ---DSPTQNVGGALTKSGLAKVEHPAPMLSLGDVFSLEELAAWDERTTKSLGFQS- 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  + + Y  G+ V A+ RG+G  GEDV+  ++ I  IP+ L+   P 
Sbjct: 120 ---PYNLELKIDGLAVALTYVDGRLVQASTRGNGTIGEDVTRNVKTIKAIPQQLTE--PL 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
            IEVRGE+Y+ K  F ALN +  A G +P+ANPRNAA+G LR+L+      R L+ FV+ 
Sbjct: 175 TIEVRGEIYMPKKSFAALNVQREADGLEPFANPRNAAAGSLRQLDAQVTKQRELSAFVYY 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
             +   +    Q   L +   LG P +   +       I  +     + R TL Y IDG+
Sbjct: 235 TAEPEVLGVTTQSGALARFAELGLPTDTHNQVIEKMADIADFIATYTAKRDTLAYGIDGV 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+    Q +LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV 
Sbjct: 295 VVKVNALDNQVELGNTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAVMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+LHN DY++            +DIR+GD V + +AG++IP+V  +I+++R 
Sbjct: 355 LAGTTVQRASLHNPDYLQ-----------QKDIRIGDTVTLHKAGDIIPEVGQVILSQRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D+  +  P  CP C S +V            A RC     C+AQ  E L HF SR+A N
Sbjct: 404 ADSTAYPIPVVCPACGSELVHISGE------VALRCINPF-CAAQIQEGLTHFASRNAMN 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I G+G + +D   K+      I+  A I+ L   Q  S  K      F + S  NL  +I
Sbjct: 457 IAGMGPRVIDQLLKAN----YIKDVASIYRLDMTQLLSLDK------FQEKSAANLLAAI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + +  SLER +F LGIR VGA+ AR +A+ + +    A+     IA           + 
Sbjct: 507 TQSKENSLERLLFGLGIRLVGAKAARLVAEKFKTLSAIAEATVPEIA----------SID 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQK 660
            +G+ IAQ+IV+++ +P +   +  L         +   E + +S    KK+V TG L++
Sbjct: 557 GIGEAIAQSIVQYFSHPESQQLLIELTAAGVNQTYLSDVEVDENSFFYGKKIVLTGKLEQ 616

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             R  A +++   GA V+  +S KTD++I G + GSKLEKA  LGV +  E++FL 
Sbjct: 617 SSRPAATKWLQDHGAQVAGSVSAKTDLLIAGADAGSKLEKATALGVLVWTEQEFLE 672


>gi|225849186|ref|YP_002729350.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1]
 gi|254781434|sp|C1DW63|DNLJ_SULAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225644062|gb|ACN99112.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 701

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/733 (34%), Positives = 401/733 (54%), Gaps = 59/733 (8%)

Query: 2   KKRQLIPIEALSIEQARKE--LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           K R+ + ++  SI++ + E  +  L + I +HD  YY  ++P+I D EYD L +    I 
Sbjct: 13  KTREFLNLDIKSIDRKKAESIIEDLREVIRFHDWRYYVLAQPVISDYEYDKLFKLLKDIE 72

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             +PDL     P+ P  ++  E+     +V H  P LSL+  +N  DLR F  R+     
Sbjct: 73  SKYPDLI---TPDSPTQRVPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVRELTG 129

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
                 I + +EPK DG  I++ YEK  F   A RGDG  GED++  ++ I +IP     
Sbjct: 130 L---EKIEYAVEPKFDGAGISLIYEKDLFKRGATRGDGEVGEDITNNLKVIKSIPLSAKF 186

Query: 180 NIPEI--IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
           +   I  +E+RGEV I K+ F  +N++ +  G   +ANPRNAA+G +R  +P ++  R L
Sbjct: 187 SSYGIDKVEIRGEVLIRKDIFKRINEQRLEEGLPLFANPRNAAAGSIRLQDPKEVAKRGL 246

Query: 237 NFFVHGLGKTS-------EIFAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEM 288
             FV+ +               K   + ++ +  LGF     V +  N    ++ Y  E 
Sbjct: 247 EAFVYQITYAEKDGKNLLGTVLKKHSDNIKMLHLLGFKTPYEVLKVCNGIDEVIDYCREW 306

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
           +  R   PY+IDG+V KV++ SL ++LG  +  PRW I++KF  +QA+T+++D+  Q+GR
Sbjct: 307 ERKRDNYPYEIDGMVIKVNDISLYEKLGFTSHHPRWAIAYKFKARQATTKIIDVVFQVGR 366

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVA+L+PV IGG ++++ +L NED+I+            +DIR+GD VLV+RAG+
Sbjct: 367 TGAITPVAKLQPVEIGGVIVSSVSLFNEDFIR-----------EKDIRIGDTVLVERAGD 415

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP VV +I   R  + +P  FP  CP C S +V+ L        A +RC   + C AQ 
Sbjct: 416 VIPYVVMVIKEARTGNEKPIEFPKNCPSCGSPLVKPLGE------AVYRCIN-INCPAQV 468

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           +ER+ HF S+DA +I+GL +  +  F+K       ++   DI+ L  R       I+NI 
Sbjct: 469 IERIIHFASKDAMDIKGLSEATVKKFYK----LGLLKSIPDIYRLDFRI------IKNIQ 518

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           GFG+ SV NL  +I + +N  L R I+ LGIR+VG   A++LA      ++         
Sbjct: 519 GFGEKSVNNLKQAIEESKNRPLYRLIYGLGIRYVGEVTAKTLASAVNCLEDLK------- 571

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
              N     L+++P +GD +A  I  F+ N +N+  ++ L KE+  ++   ++    ++ 
Sbjct: 572 ---NFTITDLMKLPDIGDKVATEIYNFFHNEQNLKMIQQL-KELGVNVCNPKEEKRGKLA 627

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
               VFTG L+   R KA+E V  LG  V   +S+K   ++VG+ PGSKL+KAQ++  +K
Sbjct: 628 GLNFVFTGALKCCSREKAKEIVESLGGNVLDTVSKKVHYLVVGEEPGSKLQKAQKIPTIK 687

Query: 708 IMNEEQFLFLLQQ 720
           I+NEE+FL ++ Q
Sbjct: 688 IINEEEFLKMIGQ 700


>gi|111023430|ref|YP_706402.1| NAD-dependent DNA ligase LigA [Rhodococcus jostii RHA1]
 gi|123045472|sp|Q0S2J2|DNLJ_RHOSR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110822960|gb|ABG98244.1| DNA ligase (NAD+) [Rhodococcus jostii RHA1]
          Length = 696

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/730 (30%), Positives = 367/730 (50%), Gaps = 44/730 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +    P  A      R+  + L +E+  H   YY    PII D E+D L    + + +
Sbjct: 1   MSESTEAPTPA--PGHVREHWNELAEEVRQHQFRYYVRDAPIISDGEFDVLLGELNDLEN 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +PDL     P+ P   +GG  +       H    LSL+ ++  ++LR +I+R+    ++
Sbjct: 59  QYPDL---RTPDSPTQLVGGGFSTDFASADHLERMLSLDNVFATDELRTWISRV----EQ 111

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL- 179
           +    + +  E KIDG  + + YE G+   AA RGDG +GE+V+   R I  IP  L+  
Sbjct: 112 ETGPDLHYLCEVKIDGVALNLVYENGRLDRAATRGDGRTGEEVTLNARTIDDIPEKLTGT 171

Query: 180 ---NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY- 235
               IP ++EVRGEV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP    R  
Sbjct: 172 DEYPIPALLEVRGEVFFRLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRR 231

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L    HGLG++       QY+    +   G PV+    +      +V         R  +
Sbjct: 232 LGMICHGLGRSEGFEPVSQYDAYTALAAWGLPVSTHTARVTGADAVVDRVQYWGEHRHDV 291

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            ++IDGLV KVDE SLQ++LG  +R+PRW I++K+  ++A+T+LLDI + +GRTG +TP 
Sbjct: 292 EHEIDGLVVKVDETSLQRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPF 351

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A +EPV + G+ ++ ATLHN   +K            + + +GD V++++AG+VIP+V+ 
Sbjct: 352 AYMEPVTVAGSTVSLATLHNGSEVKR-----------KGVLIGDTVVLRKAGDVIPEVLG 400

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            +V+ R  D   F  P+ CP C + +         +  A  RC     C AQ  ER+ H 
Sbjct: 401 PVVDARTGDEYEFVMPTHCPECDTPL-----APAKEGDADIRCPNQQYCPAQLRERVFHV 455

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
             R AF+IE LG +      +++    +I    D+F+L       T+      G    + 
Sbjct: 456 AGRGAFDIEVLGYEAATSLLEAK----AIGDEGDLFSLTEDDLLKTSLFRTKAGGLSANG 511

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
             L D+++  ++  L R + +L IRHVG   AR+LA  + S     +     +A      
Sbjct: 512 RRLLDNLDSAKDKPLWRVLVALSIRHVGPTAARALAGEFGSLARIRESSVEELAA----- 566

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
                V  VG  IA A+ E++    +   VE             ++++   +E   +V T
Sbjct: 567 -----VDGVGGTIAAAVAEWFGVDWHQQIVEKWSAAGVRMEDERDESIPRNLEGLSIVVT 621

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G+L+   R +A+E +   G   +  +S+KT  ++VG++PGSK +KA +LGV +++E+ F 
Sbjct: 622 GSLETFSRDQAKEAILIRGGKAAGSVSKKTAFVVVGESPGSKHDKAVELGVPVLDEDGFR 681

Query: 716 FLLQQYNTTL 725
            LL+     +
Sbjct: 682 RLLEGGPDAV 691


>gi|240168924|ref|ZP_04747583.1| NAD-dependent DNA ligase LigA [Mycobacterium kansasii ATCC 12478]
          Length = 683

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/711 (30%), Positives = 350/711 (49%), Gaps = 43/711 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +   L +++  H   YY    PII D+E+D L RR + +   +P+L     P+ P   +
Sbjct: 3   HQWQDLAEQVREHQFRYYVRDAPIITDAEFDELLRRLEVLEEQYPEL---RTPDSPTQLV 59

Query: 79  GGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG         V H    LSL+  ++  +L  +  R++        ++  +  E KIDG 
Sbjct: 60  GGAGFATEFEPVEHLERMLSLDNAFSAAELAAWAARVHAEVG----DAASYLTELKIDGV 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193
            +++ Y++G+   A+ RGDG +GEDV+   R I  +P  LS      +PE++EVRGEV+ 
Sbjct: 116 ALSLVYQQGRLTRASTRGDGRTGEDVTLNARTIDDVPERLSPSDDYPVPEVLEVRGEVFF 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAK 252
              DF ALN  ++  G+ P+ANPRN+A+G LR+ +P    R  L    HGLG T      
Sbjct: 176 RVADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTQGFRPA 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++    +R  G PV+      N   G+    +     R  + ++IDG+V KVDE +LQ
Sbjct: 236 SLHQAYLALRAWGLPVSEHTTLVNDMAGVQERIDYWGEHRHEVDHEIDGVVIKVDEVALQ 295

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  AT
Sbjct: 296 RRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVAQAT 355

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   +K            + + +GD V++++AG+VIP+V+  +V+ R    + F  P+
Sbjct: 356 LHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPT 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +         +  A  RC     C AQ  ER+ H  SR A +IE LG +   
Sbjct: 405 TCPECGTVL-----APEKEGDADIRCPNSQRCPAQLRERVFHVASRSALDIEVLGYEAAV 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  I    D+F L       T       G    +   L  +++K +   L R
Sbjct: 460 ALLQ----AGVIASEGDLFALTEDDLLRTELFRTKAGGLSANGKRLLANLDKAKAAPLWR 515

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +L IRHVG   AR+LA  + + +  A      +A           V  VG  IA A+
Sbjct: 516 VLVALSIRHVGPTAARALATEFGTLEAIANASTEQLAA----------VEGVGPTIAAAV 565

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            E++    +   V+             +++V   +    +V TG+L    R +A+E +  
Sbjct: 566 SEWFTVDWHREIVDKWRAAGVRMADERDESVPRTLAGLTVVVTGSLAGFSRDEAKEAIVA 625

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            G   +  +S+KT  ++ GD+PGSK +KA +LGV I++E+ F  LL Q   
Sbjct: 626 RGGKAAGSVSKKTSYVVAGDSPGSKYDKAVELGVPILDEDGFRELLAQGPA 676


>gi|73748436|ref|YP_307675.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1]
 gi|123759761|sp|Q3ZX08|DNLJ_DEHSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|73660152|emb|CAI82759.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1]
          Length = 677

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/714 (34%), Positives = 373/714 (52%), Gaps = 57/714 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L +EI+ H+  YY    P I D++YD L RR   +  A P+L     P+ P  K+G
Sbjct: 7   EVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELV---TPDSPTQKVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            E   +   V H  P LSL   ++  +L  +  R+ +        S     EPK+DG  +
Sbjct: 64  AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLGNI---SFQIDCEPKMDGLAV 120

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y  GKF   A RGDG  GE+++  +R I +IP     N P + EVRGEVY+SKN F 
Sbjct: 121 ALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNGFA 180

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEM 257
            LN E    G   +ANPRNAA+G LR+L+P+    R L+ F++ LG + + +     +++
Sbjct: 181 KLNRERADKGLPLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHWQI 240

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L     +GF +N   R  NT      YY +M + R++LPY+ DG+V+KVD  SLQ +LG+
Sbjct: 241 LDYFSKIGFRINPLNRLVNTMEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHRLGD 300

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             R PRW I++KF  +Q  TRL  I I +GRTG L P A LEPVN+GG ++  A LHNED
Sbjct: 301 VGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHNED 360

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS----- 432
            I             +DIR GD V+++RAGEVIP+VV  ++++R+P+++PF         
Sbjct: 361 DI-----------LRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNP 409

Query: 433 -----FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                 CP+C   + R          A H CT  ++C AQ   +L+HFVSR A +I G+G
Sbjct: 410 NLNRPACPVCGGEIYRPAGE------AMHYCTN-VSCPAQFERQLEHFVSRGAMDIRGIG 462

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       +       ++  +D++ L             +   G+ S  N+ D+I   + 
Sbjct: 463 ESLSVILAQQ----GLVKNVSDLYYLTTADLL------QLPRMGEKSADNIIDAIADSKT 512

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L+R IF LG+RHVG E A  L+++Y           NI A        L  +P +GD 
Sbjct: 513 RPLDRVIFGLGVRHVGNETATLLSRHYG----------NIWALAKTGLGELQTIPDIGDK 562

Query: 608 IAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           IA +IV ++   +N+  +       V  +  +   N +      + V TG L+   R +A
Sbjct: 563 IASSIVAYFSEEKNVAVIRRLEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSREEA 622

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           QE +  LG      +++ T  ++VG + GSKL KA+ +GVK ++E +F+ +L+Q
Sbjct: 623 QEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKARSMGVKELSEREFINMLEQ 676


>gi|313203539|ref|YP_004042196.1| DNA ligase, nad-dependent [Paludibacter propionicigenes WB4]
 gi|312442855|gb|ADQ79211.1| DNA ligase, NAD-dependent [Paludibacter propionicigenes WB4]
          Length = 676

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/706 (31%), Positives = 355/706 (50%), Gaps = 49/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + ++ SL +E+  H+  YY  S P I D E+DA  R+   +  A P+     DPN P  
Sbjct: 2   IKDQIESLRRELEQHNYNYYVKSAPTISDFEFDAKLRQLQELEAAHPEFF---DPNSPTQ 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++     +V H  P LSL   ++  +++ F  R+ +              E K DG
Sbjct: 59  RVGSDIASGFEQVAHVYPMLSLGNTYSEGEVQDFYERVRKGLN----EDFELVCELKYDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE G  V A  RGDG  G+DV+A ++ I +IP  L  N P+  E+RGE+ +  +
Sbjct: 115 TSISLTYEDGVLVRAVTRGDGEKGDDVTANVKTIRSIPLRLQGNYPKSFEIRGEILMPWS 174

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN E      + +ANPRNAASG L+  N + +  R L+ +++ L     + +    
Sbjct: 175 VFDDLNREREEQEEQLFANPRNAASGTLKLQNSSVVASRKLDAYLYYL-LGENLPSDLHS 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+     GF +++  +   T   + ++ N     R  LP   DG+V KV+  S Q+ L
Sbjct: 234 ENLEAAHSWGFKISDATKVCRTLDEVSAFINYWDVERKNLPVATDGIVLKVNSLSQQRAL 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G  +  A+LHN
Sbjct: 294 GFTAKSPRWAIAYKFQAEKAVTRLNSVSYQVGRTGAVTPVANLDPVQLSGTTVKRASLHN 353

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           D+ +GD V V++ GE+IPK+  +  + R        F   CP
Sbjct: 354 ADIIEAL-----------DLHIGDMVFVEKGGEIIPKITAVDKDARLLIGDKVQFIKSCP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR          AAH C    AC  Q   +++HFVSR A NI+GLG + ++  +
Sbjct: 403 ECGAALVRFEGE------AAHYCPNENACPPQIKGKMEHFVSRKAMNIDGLGSETINLLY 456

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +++     +   ADI+TL+        ++         S  N+ +   K + I  ER +F
Sbjct: 457 QND----LLHNIADIYTLKVPDLIRLERLGT------KSAYNIKEGAEKSKEIPFERVVF 506

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  IA+ LA  + + +   Q            +  L+ V  +G  IAQ++V +
Sbjct: 507 ALGIRFVGETIAKKLAYAFKNIEALEQA----------SYDELVAVDEIGGRIAQSVVAY 556

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + +  NI  +  L +         +K  +  + +    +V +GT  K  R + +  + + 
Sbjct: 557 FSDSLNIEMLNRLKEYGLQMSLSEDKLQAHGTALAGLSIVISGTFSKHSRDEYKTMIERN 616

Query: 674 GAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLL 718
           G      +S KT  I+ GDN G  KL+KA++LGVK++NE+ FL ++
Sbjct: 617 GGKNVGSVSAKTSFILAGDNMGPEKLKKAEKLGVKLVNEDDFLSMI 662


>gi|332884007|gb|EGK04287.1| DNA ligase [Dysgonomonas mossii DSM 22836]
          Length = 665

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/711 (30%), Positives = 359/711 (50%), Gaps = 51/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++Q + ++ +L +E++ H+  YY  S P I D E+D   +    +   +P+     DPN 
Sbjct: 1   MDQIKHQIDTLREELNKHNYDYYVLSAPTISDFEFDKKLKELTDLETQYPEYF---DPNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G ++N S  +V H  P LSL   +   ++  F  R+ +       +      E K
Sbjct: 58  PSQRVGSDINKSFKQVPHKYPMLSLGNTYTEAEITDFYNRVKKGLN----DDFDIVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
            DGT I++ Y  G+   A  RGDG  G+DV+A +R I +IP  L     P   E+RGE+ 
Sbjct: 114 YDGTSISLTYINGQLTQAVTRGDGVQGDDVTANVRTIRSIPLRLHGAGYPAEFEIRGEIL 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +  + F  +N E        +ANPRNA SG L++ +P  +  R L+ +++ L    ++  
Sbjct: 174 MPWSVFDDINKERAEQEEALFANPRNAGSGTLKQQDPKIVASRKLDSYLYYL-LGEDLPT 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G YE L K +  GF +++  ++  T   I +Y +     R  LP   DG+V KV+  + 
Sbjct: 233 DGHYENLIKAKEWGFKISDATKKCKTLDEIFAYIHYWDKERKNLPVATDGIVLKVNSLTQ 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK LG  ++ PRW I+ KF  +QA T L  +  Q+GRTG +TPVA L PV + G  +  A
Sbjct: 293 QKNLGFTSKFPRWAIAFKFQAEQAVTTLESVSYQVGRTGAITPVANLRPVKLSGTTVKRA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +L+NEDYI  L           D+ + D+V V++ GE+IPK+  + V +R+       F 
Sbjct: 353 SLYNEDYINSL-----------DLHINDQVYVEKGGEIIPKITGVDVAQRNIFDAKVEFI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +V+D         A + C   ++C  Q   R++HF++R A NI G G + +
Sbjct: 402 KDCPECGTPLVKDEGE------AIYYCPNDVSCPPQIKGRIEHFLTRKAMNIAG-GTETV 454

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  +     A  IR  AD++TL+ +  +   +      + + S  NL DSI+   ++  E
Sbjct: 455 EHLYN----AGYIRNIADLYTLKWQDVSRLER------WAEKSAKNLIDSIHASVSVPYE 504

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F+LGIR+VG  +A+ LA  +                       L +V  +GD IAQ+
Sbjct: 505 RVLFALGIRYVGETVAKKLALAFPDIDLLQAAT----------IEDLTQVDEIGDRIAQS 554

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEY 669
           IV+++ NP N+  +  L                   +++   +V +GT +K  R + +  
Sbjct: 555 IVKYFSNPNNLEVINKLRTFGLRFELSESIIAQRTEKLKGLSIVISGTFEKYSRDEYKSM 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + Q G   S  +S KT  ++ GDN G +KLEKA+ LG+ I+NE+ FL +L+
Sbjct: 615 IEQNGGKNSGSISSKTSYVLAGDNMGPAKLEKAKSLGIPIINEDDFLKMLE 665


>gi|147669216|ref|YP_001214034.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1]
 gi|190359250|sp|A5FRL4|DNLJ_DEHSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146270164|gb|ABQ17156.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1]
          Length = 680

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/714 (34%), Positives = 373/714 (52%), Gaps = 57/714 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L +EI+ H+  YY    P I D++YD L RR   +  A P+L     P+ P  ++G
Sbjct: 10  EVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELV---TPDSPTQRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            E   +   V H  P LSL   ++  +L  +  R+ +              EPK+DG  +
Sbjct: 67  AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLGNI---PFQIDCEPKMDGLAV 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y  GKF   A RGDG  GE+++  +R I +IP     N P + EVRGEVY+SKN F 
Sbjct: 124 ALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNGFA 183

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEM 257
            LN E    G   +ANPRNAA+G LR+L+P+    R L+ F++ LG + + +     +++
Sbjct: 184 KLNRERADKGLPLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHWQI 243

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L     +GF +N   R  NT      YY +M + R++LPY+ DG+V+KVD  SLQ +LG+
Sbjct: 244 LDYFSKIGFRINPLNRLVNTLEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHRLGD 303

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             R PRW I++KF  +Q  TRL  I I +GRTG L P A LEPVN+GG ++  A LHNED
Sbjct: 304 VGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHNED 363

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF------- 430
            I             +DIR GD V+++RAGEVIP+VV  ++++R+P+++PF         
Sbjct: 364 DI-----------LRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNP 412

Query: 431 ---PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
               + CP+C   + R          A H C   ++C AQ   +L+HFVSR A +I G+G
Sbjct: 413 NLNRTACPVCGGEIYRPAGE------AMHYCAN-VSCPAQFERQLEHFVSRGAMDIRGIG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       +       ++  +D++ L             +   G+ S  N+ D+I   + 
Sbjct: 466 ESLSVILAQQ----GLVKNVSDLYYLTTADLL------QLPRMGEKSADNIIDAIADSKT 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L+R IF LG+RHVG E A  L+++Y           NI A        L  +P +GD 
Sbjct: 516 RPLDRVIFGLGVRHVGNETATLLSRHYG----------NIWALAKTGLGELQTIPDIGDK 565

Query: 608 IAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           IA +IV ++   +N+  +       V  +  +   N +      + V TG L+   R +A
Sbjct: 566 IASSIVAYFSEEKNVAVIRRLEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSREEA 625

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           QE +  LG      +++ T+ ++VG + GSKL KA+ +GVK ++E +F+ +L+Q
Sbjct: 626 QEKIRSLGGTAKDNVTKATNYLVVGADAGSKLTKARSMGVKELSEREFINMLEQ 679


>gi|224369899|ref|YP_002604063.1| LigA1 [Desulfobacterium autotrophicum HRM2]
 gi|254781310|sp|C0QJ86|DNLJ_DESAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|223692616|gb|ACN15899.1| LigA1 [Desulfobacterium autotrophicum HRM2]
          Length = 685

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/724 (34%), Positives = 395/724 (54%), Gaps = 60/724 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++ +KE   L +++  H+  Y+    P+I D EYD + +R  AI   FP+L     P+
Sbjct: 7   SFDRIKKEARLLREQLHVHNINYHVKDDPVISDGEYDRMMQRLIAIETQFPEL---STPD 63

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  +IG +   +     H+IP  SL+  ++ +D+  F  R  +     D   I +T+EP
Sbjct: 64  SPTRRIGAKALTAFETAEHAIPMQSLDNAFSDQDVIDFHNRTAKILNTSD---IRYTVEP 120

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVR 188
           K+DG  + +RYE+G    A  RGDG  GE ++   R IP++P  L+      IP+++EVR
Sbjct: 121 KLDGVAVELRYEQGSLTLALTRGDGTMGEVITDNARTIPSVPLKLAPAGNGTIPDVLEVR 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV I+  DF  LN + +A G   +ANPRNAA+G LR+L+      R L  FV+G+G+  
Sbjct: 181 GEVIINSKDFEGLNKKRLATGEPLFANPRNAAAGSLRQLDSRVTAKRPLEIFVYGVGRAQ 240

Query: 248 EIFAK----GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           E+ A         +L+ ++ LGF +N  +R   +   ++  +   +++R  L Y+IDG+V
Sbjct: 241 ELMANFDIGSHSALLESLKRLGFRINPLIRSGLSLTEVLDRFKAFETMRQDLDYEIDGMV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD+   Q++LG +ARSPRW I++KF   + +T + DI +Q+GRTG LTPVA LEPVNI
Sbjct: 301 IKVDDIVFQERLGTKARSPRWAIAYKFPAMEETTVINDIIVQVGRTGTLTPVAILEPVNI 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++  A+LHN+D I+            +DIR+ D VLVKRAG+VIPKVV  +   R  
Sbjct: 361 GGVMVARASLHNQDEIQN-----------KDIRINDTVLVKRAGDVIPKVVKPVTALRTG 409

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + F  P+ CP+C S V R  N       AA +C    +C AQ  +RLKHFVS+  F++
Sbjct: 410 SERVFVMPTHCPVCHSPVRRLDNE------AAVKCINA-SCKAQLKQRLKHFVSKGGFDM 462

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG + +D           +   AD+FTL R    +  ++      G+ S TN+  +I 
Sbjct: 463 EGLGTKLIDQLVDRT----LVGSFADLFTLDRETLAAMDRM------GEKSATNIVQAIE 512

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + + I L+RF+F+LG+ H G   A+ L+  + + +   +     +            +  
Sbjct: 513 RSKRIPLKRFLFALGMAHTGESAAQLLSSTFFTLEALLKASAEALGA----------IEG 562

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL------VFTGT 657
           VG   A ++V F+ NP N   +  +++     I  H    S+ ++N         V TGT
Sbjct: 563 VGPKTADSVVAFFANPDNQETIARMMEN-GVVIENHTVVESAALDNATFFSEKRVVLTGT 621

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R +A++ + + GA V + +S+ TDI++ G+  GSKL KA+ LGV IM+E+ FL  
Sbjct: 622 LGTLTRSEAKQRLEEQGARVVSSVSKNTDILVAGEASGSKLVKARSLGVTIMDEQTFLEH 681

Query: 718 LQQY 721
           L + 
Sbjct: 682 LDRG 685


>gi|81749525|sp|Q8FPZ7|DNLJ_COREF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23493177|dbj|BAC18148.1| putative DNA ligase [Corynebacterium efficiens YS-314]
          Length = 938

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/712 (31%), Positives = 355/712 (49%), Gaps = 50/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            Q R+  + L +++ YH D YY   +P I D+++DAL R+   +    P+LA    P+ P
Sbjct: 266 AQLRRTWNELAEKVRYHRDLYYNQ-QPEIPDADFDALFRQLQDLEEQHPELAV---PDSP 321

Query: 75  LNKIGGEMNL--SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             ++G  +    S   V H    LSL+ +++ E+LR ++ R           +  +  E 
Sbjct: 322 TKEVGAPVTEQSSFDNVEHLERMLSLDNVFDEEELRDWLART---------PAKRYLTEL 372

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVR 188
           KIDG  I + Y  G    AA RGDG  GED++A  R I  IP  L+      IP ++EVR
Sbjct: 373 KIDGLSIDLVYRNGMLERAATRGDGRVGEDITANARVIGDIPHELTATEEYPIPAVLEVR 432

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEV+I   DF  +N + I  G KP+ANPRNAA+G LR+ NP D+  R L    HG+G + 
Sbjct: 433 GEVFIPIEDFADVNAQRIEDGGKPFANPRNAAAGSLRQKNPEDVKKRRLRMITHGIGYSE 492

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q++    +   G P ++      T   +V         R    +++DGLV KVD
Sbjct: 493 GFQPASQHDAYLALAAWGLPTSSYTEAVETADAVVDKVLYWADHRHDALHEMDGLVIKVD 552

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+ LG  +R+PRW I++K+  ++ +T+L+DI + +GRTG +TP A +EPV + G+ 
Sbjct: 553 DIASQRALGSTSRAPRWAIAYKYPPEEVTTKLIDIKVSVGRTGRVTPFAMMEPVFVAGST 612

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN+  +K            + + +GD V+V++AGEVIP+V+  +V  R    + 
Sbjct: 613 VSMATLHNQSEVKR-----------KGVLIGDTVVVRKAGEVIPEVLGPVVELRDGTERE 661

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S +       T    A  RC    +C  Q  +RL +   R AF+IE LG
Sbjct: 662 FVFPEHCPECGSTL-----APTRAEDADWRCPNTRSCPGQLSQRLTYIAGRGAFDIEALG 716

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++      ++      +   A +F L       +       G  + S   L  ++ +R+N
Sbjct: 717 EKGAQDLIRN----GILVDEAGLFDLTEEDLLESDVYTTKAGAVNASGRKLLANLEQRKN 772

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R + +L IRHVG   AR+LA  Y S Q       + +A              VG I
Sbjct: 773 TDLWRVLVALSIRHVGPTAARALAGRYRSMQKLVDAPVDELAET----------DGVGMI 822

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IAQ+  ++++   +   V+              + +   +E   +V TG L+   R   +
Sbjct: 823 IAQSFKDWFEVDWHRAIVDTWAAAGVTMEDAETEQLEQTLEGLTIVVTGGLEGFTRDSVK 882

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E +   G   S  +S+KTD ++VG+N GSK  KA++LG+ I++EE F+ LL 
Sbjct: 883 EAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLTILDEEAFVRLLD 934


>gi|70726048|ref|YP_252962.1| DNA ligase [Staphylococcus haemolyticus JCSC1435]
 gi|84028902|sp|Q4L7L9|DNLJ_STAHJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|68446772|dbj|BAE04356.1| DNA ligase [Staphylococcus haemolyticus JCSC1435]
          Length = 667

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/706 (34%), Positives = 371/706 (52%), Gaps = 53/706 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +  ++ L   ++ +   YY    P + DSEYD L R    I  A P+    + P+ P 
Sbjct: 3   NIKSRVNELHDLLNQYGYEYYVQDNPSVPDSEYDKLLRELIDIEEAHPEF---KSPDSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE+  S  KV H  P LSL   +N ++LR+F  RI          S+ +  E KID
Sbjct: 60  VRVGGEVQSSFEKVNHDTPMLSLGNAFNEQELRRFDQRIRE-----QVGSVEYMCELKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  ++++Y +G+FV    RGDG +GED++  +R I  IP  L +N P   EVRGE Y+ +
Sbjct: 115 GLAVSLKYVEGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKINEPLSFEVRGEAYMPR 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           + F+ LN+E      +P+ANPRNAA+G LR+L+P     R L+ F++ +   ++  A  Q
Sbjct: 173 SSFIRLNEEKEKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFDATTQ 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
              L ++  LGF  N+   +     G++ Y  +    R  L YDIDG+V KV++   Q +
Sbjct: 233 SGALDELDRLGFKTNHERMRVGDIEGVLEYIEKWTKQREQLSYDIDGIVIKVNDIEQQDE 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G   +SPRW I++KF  ++  T L DI++ IGRTG++TP A L+PV + G  ++ A+LH
Sbjct: 293 MGYTQKSPRWAIAYKFPAEEVVTTLQDIELSIGRTGVVTPTAILDPVRVAGTTVSRASLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I             RDIR+GD V+VK+AG++IP+VV  I   R     P+S P+ C
Sbjct: 353 NEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSITERRPEGTLPYSMPTHC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + +   
Sbjct: 402 PSCDHELVRIEGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           +        I   ADIF L         ++ +        V NL  +I   +  SLE  +
Sbjct: 455 YHHN----VINDVADIFYLTEDDLLPLERMGS------KKVENLLKAIEDAKANSLEHLL 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRH+G + ++ LA+ Y +     +     +          I +  +GD +AQ++V 
Sbjct: 505 FGLGIRHLGVKASQVLAEKYETMDRLLEVTEEEL----------ISIHDIGDKLAQSVVT 554

Query: 615 FYQNPRNICAVEALLK----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + +N      +E L       V   I   +     + +NK +V TG LQ++ R +A  ++
Sbjct: 555 YLENEDIKALIEKLKYKNVNMVYNGIKTSDIEGHPDFKNKTIVLTGKLQQLTRKEASAWL 614

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
              GA V++ +++KTD++I G++ GSKL KA++ G +I  EEQF+ 
Sbjct: 615 ELQGAKVTSSVTKKTDLVIAGEDAGSKLTKAEKFGTEIWTEEQFVA 660


>gi|326381521|ref|ZP_08203215.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
 gi|326199768|gb|EGD56948.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
          Length = 692

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/718 (29%), Positives = 349/718 (48%), Gaps = 41/718 (5%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +E + L +E+  H   YY    P+I D E+D L RR  A+    P+LA +   + P   
Sbjct: 12  AREWALLAEEVRGHQFRYYVQDAPVISDGEFDTLLRRLQALEDEHPELAVA---DSPTKL 68

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG  +     V H    +SL+ +++ +++R +++R              F  E KIDG 
Sbjct: 69  VGGGFSTDFTSVDHLERMMSLDNVFDHDEMRTWVSRTEAEIGA----GTEFLCELKIDGV 124

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYIS 194
            + + YE GK V    RGDG +GEDV+   R I  +P VL      +P ++EVRGEV+  
Sbjct: 125 ALALVYENGKLVRGVTRGDGRTGEDVTLNARTITDVPHVLDDAVRPVPALLEVRGEVFFR 184

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
             DF  LN  ++  G+ P+ANPRN+A+G LR+ NP     R+L    HG+GK      + 
Sbjct: 185 VEDFQNLNASLVEDGKAPFANPRNSAAGSLRQKNPQITAKRHLRMICHGIGKIEGWRPES 244

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++    +   G PV+   R+      IV   +     R ++ ++IDGLV KVD+ S Q+
Sbjct: 245 LHDAYLALGEWGLPVSKHTRKVTGAGEIVKTIDYWGENRHSVEHEIDGLVVKVDDVSQQR 304

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV + G+ +  ATL
Sbjct: 305 RLGATSRAPRWAIAYKYPPEEVTTKLLDIMVGVGRTGRVTPWALMEPVLVAGSTVARATL 364

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   +K            + + +GD + +++AG+VIP+V+  +V  R    + F  P+ 
Sbjct: 365 HNAFEVKR-----------KGVLIGDTITIRKAGDVIPEVLGPVVELRDGTEREFVMPTN 413

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +         +     RC    +C  Q  ERL +   R AF+IE LG +    
Sbjct: 414 CPECGTEL-----APAKEGDKDIRCPNQRSCPGQLRERLFYLAGRGAFDIEALGYEGAQA 468

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              S      +    D+F+L       T       G    +     D+++K +++ L R 
Sbjct: 469 LLSS----GVLADEGDLFSLTADDLIKTDLYTTKAGALSANGKRFLDNLDKAKHVPLWRV 524

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I +L IRHVG   AR+LA  +   +         +A          +V  +G   A ++ 
Sbjct: 525 IVALSIRHVGPTPARALATAFGDLEAIQAASVEDLA----------QVDGLGPTRAASVH 574

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +++    +   V              + ++   +E K +V TG+L    R  A+E +   
Sbjct: 575 DWFAVDWHREIVAKWRAAGVSMADERDDSIERTLEGKTIVVTGSLVDFSRDGAKEAIISR 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           G   S  +S+KTD ++VG+  GSK +KA+QLGV I++E+ F  LL           +D
Sbjct: 635 GGKASGSVSKKTDYVVVGEAAGSKADKAEQLGVPILDEDGFKELLATGAVAGATPTED 692


>gi|325956253|ref|YP_004286863.1| DNA ligase [Lactobacillus acidophilus 30SC]
 gi|325332818|gb|ADZ06726.1| DNA ligase [Lactobacillus acidophilus 30SC]
          Length = 667

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/715 (30%), Positives = 374/715 (52%), Gaps = 52/715 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL  +++   D YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++ E+L++F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A    I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN+E    G   +ANPRNAA+G LR+L+P     R L+ F++      
Sbjct: 172 GECYMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +++M  LGF  N   R+  T   I  + +E  + R++L Y IDG+V K+D
Sbjct: 232 E-GITSQHQAIERMHELGFHTNETGRKLATLDEIFDFIDEYTAKRNSLTYGIDGIVLKID 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  
Sbjct: 291 DLNIEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D++P
Sbjct: 351 VARASLHNPDYLN-----------EKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG
Sbjct: 400 YKIPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +      +     +   AD++ L             +  F + S+ NL  +I+  ++
Sbjct: 453 PKIVKQLIAKD----LVHNVADLYHLTADDLA------ELDHFKEKSINNLLTAIDNSKS 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  I  LGI HVGA+ AR +A+ + +      +    IA           +  +G  
Sbjct: 503 NSVELLITGLGIDHVGAKAARLIAQKFKNLSKIMAQGVQDIA----------SIDTIGMT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           IA+++  ++  P     +E L +            E    +  ++K +V TG L+   R 
Sbjct: 553 IAESMTTYFAQPEVQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTRS 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +  LGA V+  +S+KT+ +I G + GSK  KA+QLG+ ++ EE+ +  ++
Sbjct: 613 EFTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAIAQIE 667


>gi|315037778|ref|YP_004031346.1| DNA ligase [Lactobacillus amylovorus GRL 1112]
 gi|312275911|gb|ADQ58551.1| DNA ligase [Lactobacillus amylovorus GRL 1112]
          Length = 667

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/715 (30%), Positives = 374/715 (52%), Gaps = 52/715 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL  +++   D YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++ E+L++F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A    I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN+E    G   +ANPRNAA+G LR+L+P     R L+ F++      
Sbjct: 172 GECYMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +++M  LGF  N   R+  T   I  + +E  + R++L Y IDG+V K+D
Sbjct: 232 E-GITSQHQAIERMHELGFHTNETGRKLATLDEIFDFIDEYTAKRNSLTYVIDGIVLKID 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  
Sbjct: 291 DLNIEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D++P
Sbjct: 351 VARASLHNPDYLN-----------EKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG
Sbjct: 400 YKIPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +      +     +   AD++ L             +  F + S+ NL  +I+  ++
Sbjct: 453 PKIVKQLIAKD----LVHNVADLYHLTADDLA------ELDHFKEKSINNLLTAIDNSKS 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  I  LGI HVGA+ AR +A+ + +      +    IA           +  +G  
Sbjct: 503 NSVELLITGLGIDHVGAKAARLIAQKFKNLSKIMAQGVQDIA----------SIDTIGMT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           IA+++  ++  P     +E L +            E    +  ++K +V TG L+   R 
Sbjct: 553 IAESMTTYFAQPEVQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTRS 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +  LGA V+  +S+KT+ +I G + GSK  KA+QLG+ ++ EE+ +  ++
Sbjct: 613 EFTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAIAQIE 667


>gi|119961355|ref|YP_947208.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1]
 gi|166215391|sp|A1R4P6|DNLJ_ARTAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119948214|gb|ABM07125.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1]
          Length = 768

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/741 (29%), Positives = 363/741 (48%), Gaps = 61/741 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R E   L   +  +   YYQ   P + D+E+D L RR + +    P+L  +   + P
Sbjct: 31  ESLRDEYEQLADLVRKYRYAYYQEDSPTVSDAEFDELYRRLEELEALHPELVSN---DSP 87

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEP 132
             ++GGE++ +   V H     SL+ ++++++L  ++ +      K  D    I +  E 
Sbjct: 88  TQEVGGEVSSAFAAVEHLQRMYSLDDVFSLDELEAWVRKAEASVAKLGDSVPPIAWLTEL 147

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191
           KIDG  + + Y  GK V AA RGDG +GED++  +  I  IPR LS    P  +E+RGEV
Sbjct: 148 KIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIKEIPRQLSGSGYPSEVEIRGEV 207

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           +I    FL  N+ ++A G+ P ANPRNAA+G LR+ +P +   R L+ FVHG+G    + 
Sbjct: 208 FIPSKAFLEFNESLVAAGKAPLANPRNAAAGSLRQKDPAETAKRPLSMFVHGIGAREGLD 267

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q E  + +   G PV+  ++   TF  ++ +  +    R  L ++IDG+V K+D+F+
Sbjct: 268 AKSQSESYKLLEEWGLPVSPYLKVLETFDDVLKFIADYGERRHKLVHEIDGIVVKIDDFA 327

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  +R PRW  ++K+  ++  T+LLDI + +GRTG +TP   +EPV + G+ +  
Sbjct: 328 TQRALGYTSRVPRWAAAYKYPPEEVHTKLLDIAVNVGRTGRVTPFGLMEPVKVAGSTVGM 387

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP--- 427
           ATLHN+D +K            + + +GD V++++AG+VIP++V  ++  R     P   
Sbjct: 388 ATLHNQDVVKA-----------KGVMIGDIVILRKAGDVIPEIVGPVLALRDKQEPPVRE 436

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP C + +         +     RC    +C +Q  ER+ H  SR AF+IE LG
Sbjct: 437 FVMPTECPSCGTPL-----APAKESDVDIRCPNAKSCPSQLRERVFHVASRGAFDIEALG 491

Query: 488 KQQLDFFFKS-EDPAFSIRIPADIFTLQRRQQT-------------STTKIENILGFGDV 533
            +      +  E     +   A +F+L R                  T + E +  F   
Sbjct: 492 WEAAVALTQPAEPETPPLTSEARLFSLTREDLADVLIRREKRSKGVGTGEYELVPYFYTK 551

Query: 534 -----------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
                      +   L+  + K +   L R + +L IRHVG   +R+LA  + S      
Sbjct: 552 GTAKSPSKPTATTEKLFAELEKAKQQPLWRVLVALSIRHVGPTASRALATAFGSMDAIRN 611

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
                +AH          V  VG  IA A+ E++    +   V++            + +
Sbjct: 612 ATEEQMAH----------VDGVGPTIAVALKEWFAVDWHNEIVDSWAAAGVRMEDERDAS 661

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
           V   +E   +V TGTL    R +A+E +   G   S  +S+ T  ++ G++ G+KL+KA+
Sbjct: 662 VPRTLEGLTVVVTGTLPNFSRDEAKEAIIIRGGKASGSVSKNTSYLVAGESAGTKLDKAE 721

Query: 703 QLGVKIMNEEQFLFLLQQYNT 723
           QLGV +++E+ F  LL     
Sbjct: 722 QLGVPVLDEDGFRELLANGPA 742


>gi|313207091|ref|YP_004046268.1| DNA ligase, naD-dependent [Riemerella anatipestifer DSM 15868]
 gi|312446407|gb|ADQ82762.1| DNA ligase, NAD-dependent [Riemerella anatipestifer DSM 15868]
 gi|315022511|gb|EFT35538.1| DNA ligase [Riemerella anatipestifer RA-YM]
          Length = 669

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/712 (30%), Positives = 357/712 (50%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S++  + ++  L +E+  H+  YY    P I D E+D +      +  A+P+ A   D 
Sbjct: 1   MSLDDIKHKIEELREELHQHNYNYYVLDTPSISDYEFDMMLEELKELELAYPEFA---DN 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG +  +   V H     SL+  +N EDL  +  R+ +     D   I +  E
Sbjct: 58  NSPTQRVGGNITKNFPTVEHRHRMYSLDNSYNFEDLSDWQNRLIKSL---DTTDIEYVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I+I YE G F  A  RGDG  G++++A ++ I  IP  +    P    +RGE+
Sbjct: 115 LKYDGASISILYENGAFKQAITRGDGFQGDEITANVKTISDIPLKIKGEYPNTFYIRGEI 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y++K  F  +N      G   + NPRN ASG L+  + T++  R L+  ++ +    +  
Sbjct: 175 YLTKKHFNLINKAREKEGLDLFMNPRNTASGSLKMQDSTEVRKRKLSAVLYQVV-AEDTP 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K  +E+L++ +  GF  +   +       +  + +     R  L ++IDG+V KV+  +
Sbjct: 234 VKTHWELLEQTKDWGFKTSQQAKLCKNLDEVKDFIDYWDKERQHLDFEIDGIVIKVNNLN 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  A+SPRW ++HKF  ++  T+L  I  Q+GRTG +TPVA L+PV + G ++  
Sbjct: 294 QQQLLGYTAKSPRWAMAHKFKAEKVETQLESISYQVGRTGTITPVANLKPVLLAGTIVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+ L+           +   D V V++ GE+IPK+V +   +R P+A   ++
Sbjct: 354 ASLHNEDIIRKLN-----------LHTQDFVYVEKGGEIIPKIVGVNKEKRLPNATLVAY 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            S CP C   +VR+         AAH C     C  Q + ++ H+VSR A NIE LG + 
Sbjct: 403 ISHCPECHMPLVRNEGE------AAHFCPNETHCPPQVIGKMIHYVSRKALNIENLGSET 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F+       I   AD +TL + Q     ++       + S  N+ D I K + I  
Sbjct: 457 IEQLFRE----GLISNIADFYTLTKEQLLPLDRMA------EKSAQNILDGIEKSKQIPF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGI+HVG  +A+ L K + +     +               L  V  VG  IA+
Sbjct: 507 EKVLFGLGIKHVGETVAKKLVKNFHTIDGLKKAT----------LEELTEVEDVGIKIAE 556

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++V ++QN  NI  ++ L                VS+ +E K  +FTG L    R +A+E
Sbjct: 557 SLVNYFQNEENIEILDRLKSYGIQLEQEENTSAKVSNALEGKTFLFTGKLSLFTREQAEE 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
            V + G    + +S+  + ++VG+  GSKL+KAQ L  V I++E++FL L+ 
Sbjct: 617 MVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQTLSTVTILDEQEFLDLIN 668


>gi|78185772|ref|YP_378206.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9902]
 gi|123743489|sp|Q3AUH7|DNLJ_SYNS9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78170066|gb|ABB27163.1| DNA ligase (NAD+) [Synechococcus sp. CC9902]
          Length = 680

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/713 (30%), Positives = 349/713 (48%), Gaps = 47/713 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +  + L   ++     YY    P + D+ YD L +    +    P L  +   + P  ++
Sbjct: 6   ERATELRNLLNTAAHAYYVLDTPTMEDAVYDRLYQELLELEQNTPSLKTA---DSPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG        V H I  LSL+  +N +DL  +  R+ R   +   + +    E KIDG  
Sbjct: 63  GGAPAEGFTSVEHRIGLLSLDNAFNRDDLSAWNERLLRAIDRPLGSPLDLVSELKIDGNA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197
           + + Y  G    AA RGDG  GE+++A +R I  IP  L L N PE +E+RGE +I  N 
Sbjct: 123 LALSYRNGVLERAATRGDGQRGEEITANVRTISAIPLRLRLDNPPEWVEIRGEAFIPDNT 182

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E  + G   +ANPRNA +G LR+L+P  +  R L+FF + L   ++     Q++
Sbjct: 183 FAEINAERESRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPTQEQPASQWD 242

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +   GF VN           I  + +  +  R  LPY  DG+V K++   LQ + G
Sbjct: 243 ALTWLENAGFRVNPNRALCADLADINRFSDHWEQARHDLPYATDGVVVKLNNLVLQDEAG 302

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I+ KF  ++A +RLL + +QIGRTG++TPVA  EPV + G  ++ ATLHN 
Sbjct: 303 FTQKSPRWAIALKFPAEEAPSRLLRVVVQIGRTGVITPVAEFEPVALAGTSVSRATLHNA 362

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+ +GD ++V++AGE+IP+VV ++   R   A P   P  CP 
Sbjct: 363 DRIAEL-----------DLHLGDTIVVRKAGEIIPEVVRVLPELRPSSATPVQLPEHCPE 411

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR+ +        A RC    +C A     L+H+VS+ A +++GLG + ++    
Sbjct: 412 CGSNLVREGDE------VATRCVNS-SCPAILRGGLRHWVSKGALDVDGLGSKLIEQLVD 464

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +R  AD++ L      S  ++      G+ S  NL +++   R  S  R ++ 
Sbjct: 465 Q----GLVRSIADLYRLDAALLGSLDRM------GERSANNLIEALKLSRQRSWARQLYG 514

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+++   +        + N+++         +  +  +G  +AQ++ +++
Sbjct: 515 LGIHHIGEVSAKAITAEFS-------DSNSLMEAACTAPERITAIYGIGTELAQSLQQWF 567

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKN-------VSSEIENKKLVFTGTLQKIQRHKAQEY 669
            NP N   ++ L  +                      ++    V TGTL  + R +A+E 
Sbjct: 568 SNPANQHLLDDLRSQGFRFALDDNDPGRLGAAASEQHLKGLTFVLTGTLPTLSRSEAKER 627

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +   G  VS  +S+KTD ++ G+  GSKL KA  LG+KI++E++   +L+   
Sbjct: 628 IETCGGKVSGSVSKKTDYLVAGEEAGSKLTKATTLGIKILDEDRLQAMLKDSP 680


>gi|116490507|ref|YP_810051.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1]
 gi|122277306|sp|Q04GN6|DNLJ_OENOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116091232|gb|ABJ56386.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1]
          Length = 684

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/721 (33%), Positives = 385/721 (53%), Gaps = 55/721 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q  PIE L+  QA+ E+  L  E++     YY+   P + D  YDA   R  A+  A+P 
Sbjct: 6   QFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALEKAYPS 65

Query: 65  LARSEDPNGPLNKIGG-----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
           LA    P+ P   +         +  L KV H +P LSL  +++I++L  +     +   
Sbjct: 66  LAM---PDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWDLVTTK--- 119

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
               +   + LE KIDG  I++RYE G+ + A+ RGDG  GE+V+  ++ I  IP+VL  
Sbjct: 120 -NAGSQQKYNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVL-- 176

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           N P  IEVRGE+Y+ K  F  LN +    G+  +ANPRNAA+G LR+L+P     R+L+ 
Sbjct: 177 NEPLTIEVRGEIYMRKEAFADLNQQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRHLSS 236

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F++   +   +    Q ++L++ R LGFPVN+  +  +    +  Y +E    R  LPY 
Sbjct: 237 FIYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPYG 296

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV++  ++ +LG   + PRW I++KF  ++A T + DI   +GRTG++TP A +
Sbjct: 297 IDGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAIM 356

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV + G  +  A+LHN DY++            +D+R+GD V + +AG++IP+V  +I+
Sbjct: 357 DPVFLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVIL 405

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R  DAQ +  P +CP C+S++V            A RC     C AQ  E L HF SR
Sbjct: 406 KKRPADAQAYPIPVYCPSCKSKLVHVQGE------VALRCINP-ECPAQIKEGLIHFASR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +A NI+GLG + ++           IR  +D++ L   Q T+  K  ++      S  NL
Sbjct: 459 NAMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTTLDKFADL------SSKNL 508

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I++ R  S+ER I +LGIR VGA+ A+ LA ++ + +N        IA         
Sbjct: 509 IQAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIA--------- 559

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTG 656
             +  VG ++A AI +++ +      +  L              V  +    NK++V TG
Sbjct: 560 -EIDGVGQVMADAIRQYFNSESVASLINELENFQVNFDYLTTSTVDEKNYFFNKRIVLTG 618

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L    R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++NE+ F+ 
Sbjct: 619 KLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVINEQDFIN 678

Query: 717 L 717
           L
Sbjct: 679 L 679


>gi|307297347|ref|ZP_07577153.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916607|gb|EFN46989.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 665

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/709 (33%), Positives = 387/709 (54%), Gaps = 47/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+ARK +  L +EI YH   YY    P I DSEYD L R    +   +P+L   + P
Sbjct: 2   ITFEEARKRIDELRKEIDYHAYRYYVLDDPEIPDSEYDNLLRTLIDLEEQYPEL---KTP 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +   S  +V H     SL+  ++ E++ +F  R+    Q      + +  E
Sbjct: 59  DSPSIRVGLKPVASFKEVVHEYRLFSLDNTYSEEEVLQFDRRVREELQ---IEIVRYMCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I+++Y+ G  V  A RG+G  GEDV+  IRAI +IP  L  ++   +EVRGEV
Sbjct: 116 LKIDGLSISVKYDNGLLVRGATRGNGFVGEDVTENIRAIKSIPLRLRQDL--SVEVRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K+ F  +N        + +ANPRNAA+G LR+L+P ++  R LN F + + + S++ 
Sbjct: 174 YLPKDVFYEINRARSKGELQVFANPRNAAAGTLRQLDPREVAKRRLNAFFYHVVEPSKLQ 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E LQ ++ +G  V      A    G+++++ +    +S+L Y +DG V KVD+  
Sbjct: 234 LKSQNEQLQFLKSIGMRVEPNSELAEGTDGVIAFWKKWSESKSSLNYAVDGTVVKVDDLY 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG   ++PRW I+ KF  +QA T+L+ +   +GRTG +TPVA LEPV + G  +  
Sbjct: 294 AQEELGYTTKAPRWAIAFKFPAEQAMTKLIKVTFGVGRTGTITPVAELEPVQLAGTTVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN D+I             +DIR+ D V+V++AGE+IP++V  I  +R    +  + 
Sbjct: 354 ASMHNFDFI-----------SEKDIRLFDIVIVQKAGEIIPQIVRSIPEKRTGKEKRITP 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C   V R+          A +C     C A+   R++ F SRDA +IEGLG++ 
Sbjct: 403 PSRCPVCGGEVGREKEE-----DVALKCLNP-TCPAKLSRRIQFFCSRDAMDIEGLGEKL 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   +    A  ++ P+D++ L +    S        G G+ + +NL ++I K R+  L
Sbjct: 457 VERIVE----AGLVKNPSDLYKLNKDDLLSLG-----EGIGEKTASNLIEAIQKSRSNPL 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + I  LGI  VG++ ++ LA Y+ S +             + D   L  V  +G+ +A+
Sbjct: 508 FKLITGLGIPGVGSKTSKDLANYFGSLRGL----------VSADEKELRNVSGIGEQLAK 557

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  ++ +P     VE LLK V  +I   +   S  ++  K V TGTL    R + QE +
Sbjct: 558 DIKRYFSSPEVKKEVEELLKYV--NIKDEDSPGSKPLKGMKFVVTGTLPGYSRKEIQEKI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +LG  V++ +S+ TD +++G+NPGSK +KA+ LG+KI++E  F  +++
Sbjct: 616 IKLGGEVASSVSKNTDFLLLGENPGSKEQKARDLGIKIIDERDFEEMIK 664


>gi|227877013|ref|ZP_03995105.1| DNA ligase [Lactobacillus crispatus JV-V01]
 gi|256850560|ref|ZP_05555986.1| DNA ligase [Lactobacillus crispatus MV-1A-US]
 gi|227863384|gb|EEJ70811.1| DNA ligase [Lactobacillus crispatus JV-V01]
 gi|256712583|gb|EEU27578.1| DNA ligase [Lactobacillus crispatus MV-1A-US]
          Length = 668

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/716 (29%), Positives = 370/716 (51%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++  +L+ F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++      
Sbjct: 172 GECYMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +QKM  LGF  N   R+  T   + ++ +E  + R++L Y IDG+V K+D
Sbjct: 232 E-EITSQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKID 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  
Sbjct: 291 DLGIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D+  
Sbjct: 351 VARASLHNPDYLN-----------EKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVA 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG
Sbjct: 400 YQIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +      +     +   AD++ L             +  F + S+ NL  +++  + 
Sbjct: 453 PKIVKQLIAKD----LVHNVADLYHLTADDLA------QLDHFKEKSINNLLTALDNSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  I  LGI HVGA+ AR +A+ + +               + D   +  +  +G  
Sbjct: 503 NSVELLITGLGIDHVGAKAARLIAQKFKNLAKIM----------SLDVQEIASIDTIGMT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++  ++  P     ++ L +              +   +  ++K +V TG L+   R
Sbjct: 553 IAESMTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +  ++
Sbjct: 613 SEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 668


>gi|229493359|ref|ZP_04387148.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121]
 gi|229319675|gb|EEN85507.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121]
          Length = 700

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/724 (30%), Positives = 359/724 (49%), Gaps = 42/724 (5%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +  +AR++ + L +E+  H   YY    P+I D  +D L  + +A+   +PDL     P+
Sbjct: 11  APNEAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQYPDL---RTPD 67

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +GG        V H    LSL+ +++  +LR +I ++    +++    + +  E 
Sbjct: 68  SPTQLVGGGFATDFTSVDHLERMLSLDNVFDESELRAWIAKV----EQETGPELHYLCEV 123

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVR 188
           KIDG  + + YE GK V AA RGDG +GE V+     I  IP  L+      IP ++EVR
Sbjct: 124 KIDGVALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEYPIPSLLEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GEV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP    R  L    HG G+  
Sbjct: 184 GEVFFRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFGRME 243

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 QY+    +   G PV+    +      +V         R  + ++IDGLV KVD
Sbjct: 244 GFEPASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVVKVD 303

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E SL ++LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV + G+ 
Sbjct: 304 EMSLHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVAGST 363

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   +K            + + +GD V++++AG+VIP+V+  + + R    + 
Sbjct: 364 VSLATLHNGSEVKR-----------KGVLIGDTVVLRKAGDVIPEVLGPVADVRDGTERE 412

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP C + +         +     RC     C AQ  ER+ H   R AF+IE LG
Sbjct: 413 FVMPTHCPECGTLL-----APAKEGDVDVRCPNQQYCPAQLRERVFHVSGRGAFDIEVLG 467

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +      +++     I    D+F+L   +           G    +   L  +++  ++
Sbjct: 468 YEAATGLLEAK----VIGDEGDLFSLDAEKLIEVPIFRTNAGSLSANGKRLLANLDSAKD 523

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R + +L IRHVG   AR+LA  + S Q   +   + +A           V  VG  
Sbjct: 524 KPLWRVLVALSIRHVGPTAARALAGEFGSLQRIREASVDELAA----------VDGVGST 573

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA A+VE++    +   V+             + ++   +E   +V TG+L+   R +A+
Sbjct: 574 IAAAVVEWFSVDWHQQIVDKWASAGVRMEDERDDSIPRNLEGLSIVVTGSLETYSRDQAK 633

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
           E +   G   +  +S+KT  ++VG+ PGSK +KA +LGV +++E+ F  LL+     +  
Sbjct: 634 EAILVRGGKAAGSVSKKTAFVVVGEAPGSKHDKAVELGVPVLDEDGFRRLLEDGPDAVAP 693

Query: 728 HDDD 731
            D D
Sbjct: 694 TDLD 697


>gi|312984361|ref|ZP_07791702.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05]
 gi|310894255|gb|EFQ43336.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05]
          Length = 666

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/713 (29%), Positives = 368/713 (51%), Gaps = 53/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++     P
Sbjct: 2   LTLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV---TP 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG+++    KV H IP LS+  +++  +L+ F  R+ +       + + + +E
Sbjct: 59  DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEYNVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L    P   EVRGE 
Sbjct: 115 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVRGEC 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++      E  
Sbjct: 173 YMGKEAFAKLNAEREEQGLVVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPE-E 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++ +QKM  LGF  N   R+  T   + ++ +E  + R++L Y IDG+V K+D+  
Sbjct: 232 ITSQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLG 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +  
Sbjct: 292 IEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 352 ASLHNPDYLN-----------EKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAYQI 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG + 
Sbjct: 401 PTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +      +     +   AD++ L             +  F + S+ NL  +++  +  S+
Sbjct: 454 VKQLIAKD----LVHNVADLYHLTADDLA------QLDHFKEKSINNLLTALDNSKQNSV 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  I  LGI HVGA+ AR +A+ + +               + D   +  +  +G  IA+
Sbjct: 504 ELLITGLGIDHVGAKAARLIAQKFKNLAKIM----------SLDVQEIASIDTIGMTIAE 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++  ++  P     ++ L +              +   +  ++K +V TG L+   R + 
Sbjct: 554 SMTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRSEF 613

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +  ++
Sbjct: 614 TKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 666


>gi|226305867|ref|YP_002765827.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4]
 gi|254781402|sp|C0ZXK3|DNLJ_RHOE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226184984|dbj|BAH33088.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4]
          Length = 700

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/724 (30%), Positives = 359/724 (49%), Gaps = 42/724 (5%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +  +AR++ + L +E+  H   YY    P+I D  +D L  + +A+   +PDL     P+
Sbjct: 11  APNEAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQYPDL---RTPD 67

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +GG        V H    LSL+ +++  +LR +I ++    +++    + +  E 
Sbjct: 68  SPTQLVGGGFATDFTSVDHLERMLSLDNVFDESELRGWIAKV----EQETGPELHYLCEV 123

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVR 188
           KIDG  + + YE GK V AA RGDG +GE V+     I  IP  L+      IP ++EVR
Sbjct: 124 KIDGVALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEFPIPTLLEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GEV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP    R  L    HG G+  
Sbjct: 184 GEVFFRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFGRME 243

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 QY+    +   G PV+    +      +V         R  + ++IDGLV KVD
Sbjct: 244 GFEPASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVVKVD 303

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E SL ++LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV + G+ 
Sbjct: 304 EMSLHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVAGST 363

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   +K            + + +GD V++++AG+VIP+V+  + + R    + 
Sbjct: 364 VSLATLHNGSEVKR-----------KGVLIGDTVVLRKAGDVIPEVLGPVADVRDGTERE 412

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP C + +         +     RC     C AQ  ER+ H   R AF+IE LG
Sbjct: 413 FVMPTHCPECGTLL-----APAKEGDVDVRCPNQQHCPAQLRERVFHVSGRGAFDIEVLG 467

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +      +++     I    D+F+L   +           G    +   L  +++  ++
Sbjct: 468 YEAATGLLEAK----VIGDEGDLFSLDAEKLIEVPIFRTNAGALSANGKRLLANLDSAKD 523

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R + +L IRHVG   AR+LA  + S Q   +   + +A           V  VG  
Sbjct: 524 KPLWRVLVALSIRHVGPTAARALAGEFGSLQRIREASVDELAA----------VDGVGST 573

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA A+VE++    +   V+             + ++   +E   +V TG+L+   R +A+
Sbjct: 574 IAAAVVEWFSVDWHQQIVDKWASAGVRMEDERDDSIPRNLEGLSIVVTGSLETYSRDQAK 633

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
           E +   G   +  +S+KT  ++VG+ PGSK +KA +LGV +++E+ F  LL+     +  
Sbjct: 634 EAILVRGGKAAGSVSKKTAFVVVGEAPGSKHDKAVELGVPVLDEDGFRRLLEDGPDAVAP 693

Query: 728 HDDD 731
            D D
Sbjct: 694 TDLD 697


>gi|255533202|ref|YP_003093574.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366]
 gi|255346186|gb|ACU05512.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366]
          Length = 670

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/713 (30%), Positives = 368/713 (51%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + +  + +L +E++ H   YY  + P I D  +D        +  A+P+ A   DP
Sbjct: 1   MSGSEVKTNMDALVKELNQHSYNYYVLAMPTIADYTFDKKLEELAQLELAYPEFA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  K+GG++      V H  P LSL   +N +DLR F  RI +        S  +  E
Sbjct: 58  NSPTRKVGGDITKIFTTVPHKWPMLSLGNTYNEQDLRDFDERIKKAIG----ESFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
            K DG  I++ Y+  K V A  RGDG  G+DV+A ++ I TIP  L   ++P + E+RGE
Sbjct: 114 LKFDGLSISLTYDGSKLVRAVTRGDGAKGDDVTANVKTINTIPHQLKEGDVPPLFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           +++ +  F  LN E   +G   YANPRN A+G ++  +  ++  R L+ F++ L  T + 
Sbjct: 174 IFMHRAAFERLNKEREELGEVQYANPRNFAAGTVKMQDSKEVAKRPLDCFLYSL-NTDKN 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           + K  +E LQ ++  GF V    +  N+   + S+    ++ R  L YDIDG+V KV+ +
Sbjct: 233 YFKTHWESLQALKRWGFNVCEHTKLTNSIEDVRSFIKHWENERFKLSYDIDGIVIKVNSY 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q++LG  A+SPRW IS+K+  ++  T L  +  Q+GRTG +TPVA L+PV + G  + 
Sbjct: 293 AQQQELGFTAKSPRWAISYKYKAQEVETILDKVTYQVGRTGAVTPVANLKPVQLAGTTVK 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + I+ L           D+  GD V V++ GE+IPK++++ +++R   A    
Sbjct: 353 RATLHNANEIERL-----------DLHEGDSVFVEKGGEIIPKIMNVNLDKRKAGALKII 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           +P+ CP C + ++R           A  C    AC  Q + +++HF+SR A NI+GLG +
Sbjct: 402 YPTVCPECATPLIRKEGE------VAFYCPNDEACPPQIIGKIQHFISRKAMNIDGLGDE 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++ F++       I   +D++TL  +      +++ +  FG+ S+ N+   I   + + 
Sbjct: 456 TIETFYQR----GLIAHISDLYTLHEK----AEELKTLERFGEKSIENMLHGIELSKQMP 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            E+ +F LGIR+VG  +A+ LA    +    A          +     L  +  +G  IA
Sbjct: 508 FEKVLFGLGIRYVGETVAKKLAYGVKNVDKLA----------SASLEELTAIDEIGQRIA 557

Query: 610 QAIVEFYQNPRNICAVE--ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           ++I+E++    ++  +                    S ++  K  V +G  +   R + +
Sbjct: 558 ESIIEYFGKAEHLHQINLLKSYNLKFEVAENEITLQSDKLTGKTFVISGVFENYSREELK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   G  + + +S K + ++ GDN G SKLEKA++L V ++++E  L LL+
Sbjct: 618 DMIESNGGKILSGISAKLNYLVAGDNMGPSKLEKAKKLNVPLISQEDLLELLK 670


>gi|327183069|gb|AEA31516.1| DNA ligase [Lactobacillus amylovorus GRL 1118]
          Length = 667

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/715 (30%), Positives = 374/715 (52%), Gaps = 52/715 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL  +++   D YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++ E+L++F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A    I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN+E    G   +ANPRNAA+G LR+L+P     R L+ F++      
Sbjct: 172 GECYMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +++M  LGF  N   R+  T   I  + +E  + R++L Y IDG+V K+D
Sbjct: 232 E-GITSQHQAIERMHELGFHTNETDRKLATLDEIFDFIDEYTAKRNSLTYGIDGIVLKID 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  
Sbjct: 291 DLNIEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D++P
Sbjct: 351 VARASLHNPDYLN-----------EKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG
Sbjct: 400 YKIPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +      +     +   AD++ L             +  F + S+ NL  +I+  ++
Sbjct: 453 PKIVKQLIAKD----LVHNVADLYHLTADDLA------ELDHFKEKSINNLLTAIDNSKS 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  I  LGI HVGA+ AR +A+ + +      +    IA           +  +G  
Sbjct: 503 NSVELLITGLGIDHVGAKAARLIAQKFKNLSKIMAQGVQDIA----------SIDTIGMT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           IA+++  ++  P     +E L +            E    +  ++K +V TG L+   R 
Sbjct: 553 IAESMTTYFAQPEVQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTRS 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +  LGA V+  +S+KT+ +I G + GSK  KA+QLG+ ++ EE+ +  ++
Sbjct: 613 EFTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAIAQIE 667


>gi|171059186|ref|YP_001791535.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6]
 gi|254781357|sp|B1Y6D4|DNLJ_LEPCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|170776631|gb|ACB34770.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6]
          Length = 768

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/758 (33%), Positives = 380/758 (50%), Gaps = 91/758 (12%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            ++ A    + L   + +H   YY    P + D+EYD L +   AI   +P L  +   +
Sbjct: 30  DLQTAAARAAWLRSTLQHHAHLYYVLDAPELPDAEYDRLFQELQAIEAMYPALRTA---D 86

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFT 129
            P  ++ G++      V H++P LS+    + E      F  R+ R  +  DD   I + 
Sbjct: 87  SPTQRVLGQVRDGFVVVRHAVPMLSIRTETDTEASGAVAFDARVRRELELPDDAPPISYA 146

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-------- 181
            E K DG  I +RYE G  V AA RGDG SGEDV+  IR I  IP  L            
Sbjct: 147 TELKFDGLAINLRYEHGVLVQAATRGDGESGEDVTQNIRTIGQIPLRLRWAPTLGADAHS 206

Query: 182 -----------------------PEIIEVRGEVYISKNDFLALNDEMIAV------GRKP 212
                                  P ++EVRGEVY+ ++DF ALN+           G K 
Sbjct: 207 LPPEGARFALGRPGGETGAPDLAPAVLEVRGEVYMRRDDFEALNERQRERIARGDKGEKT 266

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNN 270
           + NPRNAA+G +R+L+P     R L+FF +GLG+            +L  +   G PV  
Sbjct: 267 FVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGEVQGWALPHTHAGLLDALAAAGLPVCA 326

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
                    G+V+++  + ++R +L +DIDG+VYKVD  +LQ++LG   R PRW ++HK+
Sbjct: 327 ERAVVQGADGLVAFHQRIGALRDSLAFDIDGVVYKVDSLALQQRLGFVTREPRWAVAHKY 386

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
             ++  TRLL I+IQ+GRTG LTPVARLEPV +GG  ++NATLHNED  +          
Sbjct: 387 PAQEQMTRLLGIEIQVGRTGKLTPVARLEPVFVGGTTVSNATLHNEDEARR--------- 437

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPS----FCPICQSRVVRDL 445
             +D+RVGD V+V+RAG+VIP+VV +++ +R  D  +PF         CP+C S + R  
Sbjct: 438 --KDVRVGDTVIVRRAGDVIPQVVGVVLEQRPDDVGEPFDLYQRLGGRCPVCGSAIARPE 495

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RCTGGL C+AQ+ + + HF SR   +IEGLG + +D        A  IR
Sbjct: 496 GE------ADWRCTGGLFCAAQRKQAILHFASRRMMDIEGLGDKLVDQLVD----AGVIR 545

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
              +++ L   + T+  ++      G+ S  NL  ++ K +  +L RF+FSLGIR VG  
Sbjct: 546 TLPELYKLGVAKLTALERM------GEKSAVNLVAALEKSKQTTLARFLFSLGIRQVGEA 599

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A++LA+++ +         + +            VP VG I+A +I  F+  P N   V
Sbjct: 600 TAKALARHFGALDRVMDASVDQLQA----------VPDVGPIVALSIRTFFDQPHNREVV 649

Query: 626 E----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           E    A +                 +  K LV TGTL  + R  A++ +   G  VS  +
Sbjct: 650 EQLRAAGIHWAEHEASAAADAAELPLAGKTLVLTGTLPTLGRDAAKDLIEAAGGKVSGSV 709

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S+KT  ++ G   GSKL+KA++LG+ I++E   L LL 
Sbjct: 710 SKKTHFVVAGAEAGSKLDKARELGLVILDEAGLLALLN 747


>gi|193213809|ref|YP_001995008.1| NAD-dependentDNA ligase [Chloroherpeton thalassium ATCC 35110]
 gi|254781288|sp|B3QSH0|DNLJ_CHLT3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193087286|gb|ACF12561.1| DNA ligase, NAD-dependent [Chloroherpeton thalassium ATCC 35110]
          Length = 684

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/725 (30%), Positives = 366/725 (50%), Gaps = 57/725 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +A  ++ +L +EI+ H+  YY  +KP I D ++DAL R    +   +PDL     P
Sbjct: 1   MNKSEAEAKIRALRREINEHNYNYYNLAKPKISDYDFDALLRTLAELEAKYPDLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE+  +   V H    LSL   +N+ +L  F+ R+ +  + +   +  FT E
Sbjct: 58  DSPSQRVGGEVTKNFPIVRHKTRMLSLSNTYNLGELGDFLARVAKSLESEGVQAYDFTAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL------------ 179
            K DG  +++ Y  G  V  A RGDG  G++++A ++ + TIP  L              
Sbjct: 118 LKYDGVAVSLIYRDGLLVQGATRGDGSQGDEITANLKTVRTIPLRLRAPASGSAFDTEKW 177

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNF 238
           N    IEVRGEV+++K DF  +N E      + +ANPRNA +G L++ +  ++  R L  
Sbjct: 178 NGSGDIEVRGEVFMTKADFEKINAERDES--EQFANPRNATAGTLKQQDSREVAKRRLTM 235

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             + L            E L+K+  LGF      R   +   I ++ +E ++ R  L Y+
Sbjct: 236 VAYYL-DGRPFADLSHGERLEKLAELGFYTGEAHRTCRSLQDIQAFLDEWENKRDALAYE 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG V K++    Q+ LG  ++SPRW I++K+A ++A T L ++  Q+GRTG +TPVA L
Sbjct: 295 IDGAVIKLNNVRYQELLGATSKSPRWAIAYKYAARRAETVLENVVFQVGRTGAITPVAEL 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV + G++I+ +TLHN D I+ L           D+ +GDRV+++++G+VIPKVV ++ 
Sbjct: 355 QPVKLSGSVISRSTLHNLDEIRRL-----------DLHIGDRVIIEKSGDVIPKVVGVVA 403

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R P+A+     S CP C + +    N         + C     C AQ+  RL HF SR
Sbjct: 404 EKRPPEARTIEPLSTCPSCGTPLEHPENE------VIYYCPNEFGCPAQRKARLVHFASR 457

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG+  ++        A  I  P D++ +++    +  +      F + S  NL
Sbjct: 458 HAMDIEGLGEAVVEQLL----GAGLIGDPGDLYFIEKTALLALER------FAEKSAQNL 507

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            + I   ++ S ER IF+LGIR+VG   A  LA  + S           +    +     
Sbjct: 508 LNGIEASKSRSFERLIFALGIRYVGRRTASILADRFTSLDTIKSASQAELCETEE----- 562

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
                +G+ IA+++  F+  P+    +       +  +  +   +         +VFTG+
Sbjct: 563 -----IGETIAKSVALFFTKPQVQELLGKLERAGLRLASDKKSPDAPQTFAGMTVVFTGS 617

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+   R  A   V + G  V++ +S+KT +++ G   G KL KA++LGVKI+ E +F  +
Sbjct: 618 LENFTRDDAAAKVGERGGKVTSTVSKKTSLVVAGKEAGGKLAKAEKLGVKIVTEAEFQTM 677

Query: 718 LQQYN 722
           L   +
Sbjct: 678 LAAES 682


>gi|319951546|ref|ZP_08025350.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4]
 gi|319434794|gb|EFV90110.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4]
          Length = 726

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/738 (29%), Positives = 353/738 (47%), Gaps = 54/738 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + R+E + L + +  H   YY    PI+ D+E+D L     A+   +P L  +   + 
Sbjct: 17  PPEIRQEWTELAETVRDHQFRYYVKDAPIVSDAEFDRLFGELQALEEKYPALRTA---DS 73

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +GG  +     V H     SL+ +++ E+LR ++          +D  + F  E K
Sbjct: 74  PTQLVGGGFSTDFAPVEHLERMTSLDNVFSEEELRDWVASAVEQAGVPEDR-LPFLCEVK 132

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRG 189
           IDG  + + Y  GK V AA RGDG +GEDV+   R I  IP  L+      +P ++EVRG
Sbjct: 133 IDGVALDLVYRDGKLVSAATRGDGRTGEDVTLNARTIEDIPVTLTPTPDRPVPSLLEVRG 192

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EV+    DF  LN  ++A G+ P+ANPRN+A+G LR+ NP     R L  + HGLG    
Sbjct: 193 EVFFRLEDFAELNARLVAEGKAPFANPRNSAAGSLRQKNPAITAQRRLGMYCHGLGAVEG 252

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              +  +++   +   G PV+     A     +V         RS   ++IDGLV K+D+
Sbjct: 253 ATFESLHDVYLALADWGLPVSPHTAPATGVEEVVERMRYWGEHRSDPEHEIDGLVVKIDD 312

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++Q++LG+ +R+PRW I++K+  ++  T LLDI + +GRTG +TP A +EPV + G+ +
Sbjct: 313 RAVQRRLGQTSRAPRWAIAYKYPPEEVMTELLDIRVSVGRTGRVTPFAYMEPVLVAGSTV 372

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+  +             + + +GD V++++AG+VIP+V+  +V  R    + F
Sbjct: 373 SLATLHNQTEV-----------IRKGVLIGDTVVIRKAGDVIPEVLGPVVERRDGTEREF 421

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C + +         +  A  RC    +C AQ  ERL +  SR+A +IE LG 
Sbjct: 422 VFPERCPECDTVL-----APAREGDADWRCPNQRSCPAQLRERLFYLASRNALDIEALGY 476

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV--------------- 533
           +       S      +   A +F L       T     I                     
Sbjct: 477 EGASDLLAS----GVLENEAGLFDLTEADLLRTHLYTRIEKATRKQIEEGAEPERVVLTE 532

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +   L  ++   ++  L R + +L IRHVG   AR+LA  + + +      +  +A    
Sbjct: 533 NGRKLLANLATAKDRPLWRVLVALSIRHVGPTAARALATRFGTMEAIRAASDQELAET-- 590

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
                     VG  IA ++VE++    +   V+             ++++   +E   +V
Sbjct: 591 --------DGVGQTIAASVVEWFGVDWHREIVDRWAAAGVSMADERDESIPRTLEGLTIV 642

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG+L+   R   +E +   G   S  +S+KTD ++VGDNPGSK  KA++LG+ I++E  
Sbjct: 643 ATGSLEGFTRDGIKEAIIARGGKASGSVSKKTDYVVVGDNPGSKAAKAEELGLTILDEAG 702

Query: 714 FLFLLQQYNTTLRIHDDD 731
           F+ L++         D D
Sbjct: 703 FVELMENGPAPAGTADPD 720


>gi|294631529|ref|ZP_06710089.1| DNA ligase, NAD-dependent [Streptomyces sp. e14]
 gi|292834862|gb|EFF93211.1| DNA ligase, NAD-dependent [Streptomyces sp. e14]
          Length = 732

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/740 (30%), Positives = 352/740 (47%), Gaps = 62/740 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR+E + L +++  H   YY    P+I D+++D L R  +A+   +P+L     P+ 
Sbjct: 2   PAEAREEHARLAEQVEEHRFRYYVKDAPVISDADFDRLLRSLEALEERYPEL---RTPDS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  +N EDL  ++ RI R   +       F  E K
Sbjct: 59  PTQKVAGSYETEFTAVEHRERMLSLDNTFNDEDLAAWVDRIARELGE---QEYHFLCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L    +P+++E+RGEVY
Sbjct: 116 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLNGDKVPDLVEIRGEVY 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++A G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 176 FPMAGFEELNARLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGALEGYEG 235

Query: 252 KGQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +  E    +   G P +   R  +   GI  +       R ++ ++IDG+V K+DE  
Sbjct: 236 LTRLSEAYDLLSTWGLPTSPHNRVVDGLDGIRDFIAYYGEHRHSVEHEIDGVVVKLDEIR 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  AR+PRW I++K+A ++ +T+LL+I + +GRTG +TP A++EPV + G+ +  
Sbjct: 296 LQGRLGSTARAPRWAIAYKYAPEEVNTKLLNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 356 ATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C + +         +     RC     C AQ  ERL +   R A +IE  G   
Sbjct: 405 PGECPECGTPL-----RPMKEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVA 459

Query: 491 LDFFFKSEDPAF-SIRIPADIFTLQRRQQ--------------------TSTTK----IE 525
                K  +PA   +R   D+F L   Q                     T   K      
Sbjct: 460 AAALTKPLEPAEPPLRDEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFA 519

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   + ++I   +   L R +  L IRHVG   A +LA+ + S     Q   
Sbjct: 520 NQQGEPKKNALAMLENIAAAKQRPLARVLTGLSIRHVGPVAAEALAREFRSIDRIEQASE 579

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
             +A+             VG IIA ++ E++    +   +                    
Sbjct: 580 EELANT----------EGVGQIIAASLKEWFAEEWHQEIIRKWRAAGVRMEEEGPGEDEG 629

Query: 646 --EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+  +   GA V+  +S+KT  ++VGDNPGSK +KA Q
Sbjct: 630 PRPLEGLTVVVTGTLEHFTRDGAKAALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 689

Query: 704 LGVKIMNEEQFLFLLQQYNT 723
           L V +++E  F  LL Q   
Sbjct: 690 LKVPVLDETGFGVLLDQGPD 709


>gi|86742328|ref|YP_482728.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
 gi|123750794|sp|Q2J6U3|DNLJ_FRASC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86569190|gb|ABD12999.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
          Length = 706

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/704 (32%), Positives = 349/704 (49%), Gaps = 48/704 (6%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +E+  H   YY    P I D+EYD L     A+    PDL     P+ P  K+ G  +
Sbjct: 29  LARELDEHAYRYYVLDSPTISDAEYDRLMAELAALEERHPDL---RTPDSPTQKVAGSYS 85

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                V H    LSLE +++ ++  ++  R+ R     +     +  E KIDG  + + Y
Sbjct: 86  TLFTPVEHLERMLSLENVFDDDEFHQWAARVAR-----ESEVDAWLCELKIDGLAVDLVY 140

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALN 202
           E G  V AA RGDG +GED++  IR + ++P  L    +P ++EVRGEV+     F  LN
Sbjct: 141 EDGYLVRAATRGDGRTGEDITPNIRTLASVPVRLRGPRVPGLLEVRGEVFFPTAKFAELN 200

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
             ++AVG KP+ANPRNAA+G LR+ +P    TR L   VHGLG         Q     + 
Sbjct: 201 AGLVAVGGKPFANPRNAAAGSLRQKDPRVTATRPLEMIVHGLGAQRGFEVTSQSAAYARF 260

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LG PV        T  G++ Y +     R  + ++IDG+V KVD F+LQ++LG  ++S
Sbjct: 261 AELGLPVATHFEVLATVPGVLDYVHRWGDARHDVVHEIDGVVVKVDSFALQRRLGSTSKS 320

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW +++K+  ++ +T+L DI + +GRTG +TP   LEPV + G+ +  ATLHN D +  
Sbjct: 321 PRWAVAYKYPPEEVTTKLRDIRVNVGRTGRVTPFGELEPVLVAGSTVGLATLHNIDEV-- 378

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                    G + + +GD V++++AG+VIP++V  +V+ R    + F  P+ CP C + +
Sbjct: 379 ---------GRKGVLIGDTVVLRKAGDVIPEIVGPVVDLREGSERAFVMPTRCPECGTEL 429

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           VR             RC   ++C AQ  E + HF SR A +I+GLG +      +    A
Sbjct: 430 VRPEGE------VDIRCPNTVSCPAQLRESIFHFASRGAMDIDGLGYETATALLE----A 479

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +R   DIF L           E + GF    +  +   +   R+  L R +  L IRH
Sbjct: 480 GRVRDIGDIFHLTP------ESFEGLRGFAQKKIDQILRGVEAARHRPLWRLLVGLSIRH 533

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   AR+LA+   S +  A      +A           V  VG  IA A+++++ + R+
Sbjct: 534 VGPTAARALARELRSLEAIAATSAEDLAA----------VEGVGPKIAGAVLDWFADERH 583

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              +  +    +       +     ++   +V TGTL    R  A+E V   G  V+  +
Sbjct: 584 RDILARIAAGGARLADVGAEEGPRPLDGVTVVITGTLTDWSRDSAKEAVEARGGKVTGSV 643

Query: 682 SRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           SRKT  ++VG +PG SK +KA+ L + +++E  F  LL Q    
Sbjct: 644 SRKTTAVVVGADPGASKYDKARSLRIPMLDEAGFAVLLAQGVDA 687


>gi|309812136|ref|ZP_07705894.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185]
 gi|308433823|gb|EFP57697.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185]
          Length = 770

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/726 (29%), Positives = 350/726 (48%), Gaps = 51/726 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            +  R   + L ++I  H   YY    P I D EYD L R    +  ++P+L     P  
Sbjct: 22  PDAVRHRAAELTEQIDGHQFAYYVKDAPTISDGEYDELLRELQGVEESYPEL---RSPES 78

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG  +     V H    LSL+  ++ E+L ++  R+ R    + + S  +  E K
Sbjct: 79  PTQRVGGTYSTEFTAVDHVERMLSLDNAFSPEELAEWGDRVVR----EANTSFHYLCELK 134

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  I + YE GK V    RGDG +GEDV+  +R I  IP  L   ++P+++E+RGEV+
Sbjct: 135 IDGLAINLLYENGKLVRGVTRGDGRTGEDVTLNVRTIQGIPLELHGDDLPQLVEIRGEVF 194

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
               +F ALN  ++  G+ P+ANPRNAA+G LR+ +P     R L   VHG+G  +    
Sbjct: 195 FPVKEFEALNASLVEEGKSPFANPRNAAAGSLRQKDPAKTAKRPLRMLVHGIGARTGFDI 254

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E  + +   G P +      +T   +  +       R ++ ++IDG+V KVDE ++
Sbjct: 255 TRQSEAYELLADWGLPTSPYAEVLDTMDEVQKFVAHYGEHRHSVTHEIDGVVVKVDEIAV 314

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  +R+PRW I++K+  ++ +T+LLDI++ +GRTG +TP   ++PV + G+ ++ A
Sbjct: 315 QRALGATSRAPRWAIAYKYPPEEVNTKLLDIEVNVGRTGRVTPFGMMQPVKVAGSTVSMA 374

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP++V  +V  R  D + F  P
Sbjct: 375 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEIVGPVVEARTGDEREFVMP 423

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +  +      +     RC  G  C +Q  ERL    SR AF+IE LG +  
Sbjct: 424 THCPACGTELAYER-----EGNKDIRCPNGRTCPSQLRERLFSLASRGAFDIEALGWEGA 478

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL------------GFGDVSVTNLY 539
               +S      +   + +F L             +                  +   L 
Sbjct: 479 ISLLES----GVLTDESTLFDLTYDDLARVPLYTRVAKKSDPEAKVRDGRIVSATGEKLL 534

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            ++   +   L R I +L IRHVG   AR+LA  + S           +A          
Sbjct: 535 ANLEVAKTQPLWRVIVALSIRHVGPTAARALATQFGSIDAIRDADEATLAAT-------- 586

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
               VG +IA +I E++    +   V              ++++   +    +V TG+L+
Sbjct: 587 --DGVGAVIAHSIKEWFAVDWHENIVAGWAASGVRMEDERDESIEQTLAGLTIVATGSLE 644

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R   +E +   G   S  +S+KTD +++G+N GSK  KA++LG++I++E QF  LL+
Sbjct: 645 NFTRDGVKEAIIARGGKASGSVSKKTDYVVLGENAGSKATKAEELGLRILDEAQFTRLLE 704

Query: 720 QYNTTL 725
                L
Sbjct: 705 GGAAAL 710


>gi|258645494|ref|ZP_05732963.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470]
 gi|260402847|gb|EEW96394.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470]
          Length = 669

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/706 (30%), Positives = 362/706 (51%), Gaps = 46/706 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +  K+   L +++ YH   YY   KP I D E+D L R    +   +P++     P
Sbjct: 1   MVTAEIIKKAEELRKKLRYHSYLYYVLDKPEITDFEFDRLYRSLVDLEKEYPEIV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+ +    K+    P LSL   ++ E+LR F  R++          + +  E
Sbjct: 58  DSPTQRVGGKASDDFRKIPFKKPMLSLANAFSAEELRDFDRRVHGGIGAM---PVEYITE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + YE G  +    RGDG  GEDV++ ++ I TIP  +  N P  +EVRGEV
Sbjct: 115 LKIDGLSMNLIYENGSLMQGLTRGDGKVGEDVTSNVKTIKTIPLYI-ENAPAYMEVRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ +  F+ALN+E    G  P+AN RNAA+G LR+L+P     R L+FF + LG    + 
Sbjct: 174 YMPRKSFIALNEERDEAGMMPFANCRNAAAGSLRQLDPKVTAARNLDFFAYALGAEEGLD 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q ++L +++   F VN   R+ ++  G+++   E +  R  L YD DG+V KV++F 
Sbjct: 234 ISSQDDLLLQLKKFHFRVNPHYRKWDSIEGVITGVREWEKKRRELDYDTDGMVIKVNDFR 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG   + P+W I++K+  ++A T++  I + +GRTG+LTP A L PV + G  +  
Sbjct: 294 QQELLGATGKDPKWAIAYKYPPEEAVTKIEKIVVSMGRTGVLTPSADLTPVRLAGTTVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D+I+            +DIR GD V++ +AGE+IP++  ++  +R+   + F  
Sbjct: 354 ATLHNLDFIR-----------EKDIREGDTVIIYKAGEIIPEIAAVLKEKRNGSEKEFEM 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C + + R          AA RC    AC     E+L HF SRDA +IEGLG   
Sbjct: 403 PENCPVCGNSIRRIDTE------AAFRCINP-ACGGVVREKLIHFASRDAMDIEGLGPAV 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D           +   AD + L+            I   G+ S  NL  +I   +   L
Sbjct: 456 VDSLL----AYRLVADAADFYALKEDDL------RQIERMGEKSAANLITAIRASKERGL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + +F LGIR +G + +   A Y+ +       I+ I+A + +          +G I A+
Sbjct: 506 AKLLFGLGIRFLGEKGSELAAHYFHT-------IDAIMAADVETIEET---EGIGKITAK 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ +++ + +NI  +  L           E++ S     + +V TG L  + R +A E +
Sbjct: 556 SLYDYFHDEKNIEMINKLKNAGVLMEEIKEESESGMFSGESVVLTGKLAVMGRREASELI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +LG    + ++  T +++ G++ GSKLEKA+  G+ +++E++FL 
Sbjct: 616 KRLGGTTQSSVTNITTLVVAGEDAGSKLEKARAKGIPVIDEQEFLK 661


>gi|256844676|ref|ZP_05550161.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN]
 gi|256613217|gb|EEU18421.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN]
          Length = 668

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/716 (29%), Positives = 370/716 (51%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++  +L+ F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++      
Sbjct: 172 GECYMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +QKM  LGF  N   R+  T   + ++ +E  + R++L Y IDG+V K+D
Sbjct: 232 E-EITSQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKID 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  
Sbjct: 291 DLGIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN DY+             + IR+GD V + +AG++IP++ ++++ +R  D+  
Sbjct: 351 VARASLHNPDYLN-----------EKGIRIGDTVKLHKAGDIIPEISEVVMAKRSADSVA 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG
Sbjct: 400 YQIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +      +     +   AD++ L             +  F + S+ NL  +++  + 
Sbjct: 453 PKIVKQLIAKD----LVHNVADLYHLTADDLA------QLDHFKEKSINNLLTALDNSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  I  LGI HVGA+ AR +A+ + +               + D   +  +  +G  
Sbjct: 503 NSVELLITGLGIDHVGAKAARLIAQKFKNLAKIM----------SLDVQEIASIDTIGMT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++  ++  P     ++ L +              +   +  ++K +V TG L+   R
Sbjct: 553 IAESMTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +  ++
Sbjct: 613 SEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 668


>gi|290889907|ref|ZP_06552994.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429]
 gi|290480517|gb|EFD89154.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429]
          Length = 684

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/721 (33%), Positives = 385/721 (53%), Gaps = 55/721 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q  PIE L+  QA+ E+  L  E++     YY+   P + D  YDA   R  A+  A+P 
Sbjct: 6   QFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALEKAYPS 65

Query: 65  LARSEDPNGPLNKIGG-----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
           LA    P+ P   +         +  L KV H +P LSL  +++I++L  +     +   
Sbjct: 66  LAM---PDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWDLVTTK--- 119

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
               +   + LE KIDG  I++RYE G+ + A+ RGDG  GE+V+  ++ I  IP+VL  
Sbjct: 120 -NAGSQQKYNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVL-- 176

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           N P  IEVRGE+Y+ K  F  LN +    G+  +ANPRNAA+G LR+L+P     R+L+ 
Sbjct: 177 NEPLTIEVRGEIYMRKEAFADLNRQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRHLSS 236

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F++   +   +    Q ++L++ R LGFPVN+  +  +    +  Y +E    R  LPY 
Sbjct: 237 FIYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPYG 296

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV++  ++ +LG   + PRW I++KF  ++A T + DI   +GRTG++TP A +
Sbjct: 297 IDGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAIM 356

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV + G  +  A+LHN DY++            +D+R+GD V + +AG++IP+V  +I+
Sbjct: 357 DPVFLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVIL 405

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R  DAQ +  P +CP C+S++V            A RC     C AQ  E L HF SR
Sbjct: 406 KKRPADAQAYPIPVYCPSCKSKLVHVQGE------VALRCINP-ECPAQIKEGLIHFASR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +A NI+GLG + ++           IR  +D++ L   Q T+  K  ++      S  NL
Sbjct: 459 NAMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTTLDKFADL------SSKNL 508

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I++ R  S+ER I +LGIR VGA+ A+ LA ++ + +N        IA         
Sbjct: 509 IQAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIA--------- 559

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTG 656
             +  VG ++A AI +++ +      +  L              V  +    NK++V TG
Sbjct: 560 -EIDGVGQVMADAIRQYFNSESVASLINELENFQVNFDYLTTSTVDEKNYFFNKRIVLTG 618

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L    R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++NE+ F+ 
Sbjct: 619 KLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVINEQDFIN 678

Query: 717 L 717
           L
Sbjct: 679 L 679


>gi|241889713|ref|ZP_04777011.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379]
 gi|241863335|gb|EER67719.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379]
          Length = 663

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/710 (33%), Positives = 388/710 (54%), Gaps = 52/710 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++Q ++E+  L   ++ +   YY    P I D+EYD L ++ + +   +P+L      N 
Sbjct: 1   MKQIQEEILKLVSLLNKYSYEYYVEDNPQITDTEYDTLYKQLEKLEEKYPELILE---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +     K+TH IP LSL   ++ EDL  F  R+ +        ++ +  E K
Sbjct: 58  PTQRVGDRVLDEFEKITHKIPMLSLSNTFSTEDLIDFDARVSKLVPS---ENVEYICELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+I Y+ GK V AA RGDG  GEDV+  I+ I +IP+VL        EVRGEVY+
Sbjct: 115 IDGLAISINYDNGKLVSAATRGDGTVGEDVTENIKTIFSIPKVLKDK--RSFEVRGEVYL 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K  F  LN E        +ANPRNAA+G LR+L+      R L+ F++ +     I   
Sbjct: 173 PKKSFNILNKEREENNEVLFANPRNAAAGSLRQLDSKITAKRRLSAFIYSIVGDDSIV-- 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   L   +    PVN   +   +   ++ Y N     +  LPYDIDG+V KV+ + +Q
Sbjct: 231 SQENALNTAKEYELPVNPNFKLCKSIDEVIDYINYWTEHKQDLPYDIDGIVIKVNSYKVQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +Q+G   +SPRW  ++KF E++ +T+LLD+++ +GRTGI+TPVA L+P+ I G+ ++ A+
Sbjct: 291 EQIGFTQKSPRWATAYKFPEEELATKLLDVELSVGRTGIITPVAILDPIVISGSTVSKAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D I  LD     M           V+VK+AGE+IPKVV ++   R   +  +  PS
Sbjct: 351 LHNKDIIDDLDIHIGDM-----------VVVKKAGEIIPKVVRVVKELRTEGSTKYQMPS 399

Query: 433 FCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            CP C     V+D +P T       RC     C  Q + ++ HF SRDA NIEGLG + +
Sbjct: 400 NCPSCHQETYVKDNDPFT-------RCKNP-DCPDQNIRKIIHFASRDALNIEGLGDKVV 451

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              +       +I    D+++L R +  +  ++      G+ SV NL ++I K +  SL+
Sbjct: 452 ATLYDKGIICHTI----DLYSLDRDKLIALERM------GEKSVDNLLNAIEKSKESSLD 501

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + I++LGI +VG +  + LA+ Y++  NF           N     LI +  VG I A++
Sbjct: 502 KVIYALGILNVGKKAGKILAEKYVNLSNFM----------NATLEELINLDDVGQITAES 551

Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I+++  +  NI  +  L+   ++P    +E   ++    K +V TG L ++ R++A+E++
Sbjct: 552 ILDYLSDDNNIKFINDLINIGMNPQYEINEIKSNNIFSGKTVVLTGKLVELTRNEAKEFL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + GA V+  ++ KTD++I G+  GSKL KA+QLG++++NEEQF  ++++
Sbjct: 612 EKNGAKVTGSVTSKTDLVIAGEKAGSKLTKAEQLGIEVINEEQFANMVRE 661


>gi|158312936|ref|YP_001505444.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
 gi|254781334|sp|A8L538|DNLJ_FRASN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158108341|gb|ABW10538.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
          Length = 703

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/716 (30%), Positives = 347/716 (48%), Gaps = 48/716 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R   + L +E+  H   YY   KP + D+EYDAL R  +AI    P+L     P+ 
Sbjct: 23  AADERGRAAELARELEEHAYRYYVLDKPTVADAEYDALMRELEAIEERHPEL---RTPDS 79

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G  +     V H    LSL+ ++  E+   +  R  R     +     +  E K
Sbjct: 80  PTQKVAGSYSTLFTPVEHLERLLSLDNVFTDEEFHAWAARAAR-----EQPVTAWLCELK 134

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           IDG  + + YE G+ V AA RGDG +GED++  +R + ++P  L    +PE++EVRGEV+
Sbjct: 135 IDGLAVDLVYEGGRLVRAATRGDGRTGEDITPNVRTLASVPSRLRGPAVPELLEVRGEVF 194

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L+  VHGLG       
Sbjct: 195 FPTERFTELNAALVEAGKAPFANPRNAAAGSLRQKDPRVTASRPLDMIVHGLGAHQGFDV 254

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     ++  LG PV+       +   ++++       R  + ++IDG+V KVD+F  
Sbjct: 255 ASQSGAYARLAELGLPVSARHEVLASVEDVLAFVRRWGEHRHDVEHEIDGVVVKVDDFGQ 314

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +++PRW ++ K+  ++ +TRL DI + +GRTG +TP   LEPV + G+ +  A
Sbjct: 315 QRRLGATSKAPRWAVAFKYPPEEVTTRLRDIQVNVGRTGRVTPFGVLEPVKVAGSTVAMA 374

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D +           G + + +GD V++++AG+VIP++V  +V+ R    + F  P
Sbjct: 375 TLHNIDEV-----------GRKGVLIGDTVVLRKAGDVIPEIVSPVVDLRDGSERAFVMP 423

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C +++VR             RC   ++C AQ  E + H  SR A +I+GLG +  
Sbjct: 424 THCPECGTQLVRPEGE------VDIRCPNTVSCPAQLRESVFHLASRGALDIDGLGYETA 477

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       I    D+F L      +    E + GF D  +  +   +   R+  L 
Sbjct: 478 TVLLAEGR----IHDIGDVFHL------APESFEGLRGFADKKIEQILRGLEAARDRPLW 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  L IRHVG   AR LA+   S    A      +A           V  VG  IA A
Sbjct: 528 RLLVGLSIRHVGPTAARGLARELRSLDAIATAPAERLAA----------VDGVGPKIADA 577

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +V+++ +PR+   V  +                  ++   +V TGTL    R  A E V 
Sbjct: 578 VVDWFADPRHRDIVARIASGGVRLADEGAGEGPGPLDGVVVVITGTLDGWSRDTATEAVQ 637

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
             G  V+  +S+KT  ++ G +PG SK +KA+ L + +++E  F  LL+      R
Sbjct: 638 SRGGKVTGSVSKKTTFVVAGADPGASKYDKARTLKIPLLDEAGFAVLLRDGADAAR 693


>gi|262047040|ref|ZP_06019999.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US]
 gi|293381897|ref|ZP_06627865.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1]
 gi|260572617|gb|EEX29178.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US]
 gi|290921544|gb|EFD98578.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1]
          Length = 668

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/716 (29%), Positives = 369/716 (51%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++  +L+ F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++      
Sbjct: 172 GECYMGKEAFAKLNAEREEQGLVVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +QKM  LGF  N   R+  T   + ++ +E  + R++L Y IDG+V K+D
Sbjct: 232 E-EITSQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKID 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  
Sbjct: 291 DLGIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D+  
Sbjct: 351 VARASLHNPDYLN-----------EKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVA 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG
Sbjct: 400 YQIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +      +     +   AD++ L             +  F + S+ NL  +++  + 
Sbjct: 453 PKIVKQLIAKD----LVHNVADLYHLTADDLA------QLDHFKEKSINNLLTALDNSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  I  LGI HVGA+ AR +A+ + +               + D   +  +  +G  
Sbjct: 503 NSVELLITGLGIDHVGAKAARLIAQKFKNLAKIM----------SLDVQEIASIDTIGMT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++  ++  P     ++ L +              +   +  ++K +V TG L+   R
Sbjct: 553 IAESMTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +  ++
Sbjct: 613 SEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 668


>gi|15827911|ref|NP_302174.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae TN]
 gi|221230388|ref|YP_002503804.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae Br4923]
 gi|7674013|sp|O33102|DNLJ_MYCLE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781376|sp|B8ZS27|DNLJ_MYCLB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2414536|emb|CAB16425.1| DNA ligase [Mycobacterium leprae]
 gi|13093464|emb|CAC30658.1| DNA ligase [Mycobacterium leprae]
 gi|219933495|emb|CAR71800.1| DNA ligase [Mycobacterium leprae Br4923]
          Length = 694

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/735 (30%), Positives = 351/735 (47%), Gaps = 47/735 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   +  PI      +  ++   L +E+  H   YY    PII D+E+DAL  R   +  
Sbjct: 1   MSSPEADPIGP----EVLQQWRKLTEEVREHQFRYYVRDAPIISDAEFDALLDRLTVLEE 56

Query: 61  AFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             P+L     P+ P   +GG           H     SL+  ++ ++L  ++TRI     
Sbjct: 57  QHPELC---TPDSPTQLVGGAGFMTDFVATEHLERMFSLDNAFSGDELNAWVTRIRAEIG 113

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS- 178
                   +  E KIDG  +++ Y  G+   A  RGDG +GEDV+   R I  +P  L+ 
Sbjct: 114 NDAH----YLCELKIDGVALSLVYRDGRLTRATTRGDGRTGEDVTLNARTIEDVPERLTV 169

Query: 179 ---LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-R 234
                +PE++EVRGEV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R
Sbjct: 170 SDIYPLPEVLEVRGEVFFRVVDFQALNTSLVEEGKNPFANPRNSAAGSLRQKDPAVTAHR 229

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L    HGLG         Q++    +R  G PV+      N   G+          R  
Sbjct: 230 KLRMICHGLGHIEGFRPATQHQAYLALRDWGLPVSEHTTLVNDIAGVQGCIAYWAEHRHE 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + ++IDG+V K+DE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP
Sbjct: 290 VDHEIDGIVVKIDEVTLQRRLGSTSRAPRWAIAYKYLPEEAQTKLLDIRVNVGRTGRVTP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A + PV + G+ +  ATLHN   +K            + + +GD V++++AG+VIP+V+
Sbjct: 350 FAFMTPVKVAGSTVGQATLHNPSEVKR-----------KGVLIGDTVVIRKAGDVIPEVL 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +V+ R    + F  P+ CP C + +         +  A  RC    +C  Q  ER+ H
Sbjct: 399 GPVVDLRDGSEREFVMPTTCPECGTTL-----APEKEGDADIRCPNARSCPGQLRERVFH 453

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
             SR A +I+GLG +       ++     I    D+FTL  +    T    N  G    +
Sbjct: 454 VASRSALDIQGLGYEAGVALLAAQ----VITSEGDLFTLTEKALLRTELFRNKAGELSAN 509

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L  +++K +   L R + +L IRHVG   AR+LA  + S           +A     
Sbjct: 510 GKRLLVNVDKAKTAPLWRVLVALSIRHVGPTAARALATEFGSVDAILAASPEQLAA---- 565

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
                 V  VG  IA A+ E++    +   V          +   + +V    E   +V 
Sbjct: 566 ------VEGVGTTIAAAVTEWFTVDWHRVIVNKWRAAGVRMVDERDTSVLPTCEGLTIVV 619

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L    R  A+E +   G  V+  +S+K   ++VGD PG K +KA +LGV I+NE+ F
Sbjct: 620 TGSLAGFSRDDAKEAIVARGGKVAGSVSKKIAYVVVGDLPGYKYDKAVELGVPILNEDGF 679

Query: 715 LFLLQQYNTTLRIHD 729
             LL+Q     ++ D
Sbjct: 680 RLLLEQGPPVQQVVD 694


>gi|71064896|ref|YP_263623.1| NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
 gi|123734475|sp|Q4FUW9|DNLJ_PSYA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71037881|gb|AAZ18189.1| probable NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
          Length = 691

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/704 (35%), Positives = 374/704 (53%), Gaps = 43/704 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +    +  H+  YY    PI+ DSEYD L+R    +   +PDL +   P+ P+N++G
Sbjct: 28  QMRTFIDTLKQHNYAYYVLDNPILEDSEYDQLRRSLLELEEEYPDLVQ---PDSPINQVG 84

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                +  +VTH IP LSL  ++   DLR F+ R+          S  + +E K+DG  +
Sbjct: 85  DMPLPAFTQVTHDIPMLSLGNVFEYNDLRDFMRRVNDRL-SVAQQSPEYEMELKLDGLAV 143

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVYISKNDF 198
           +++Y  GKF  A  RGDG +GED++   + I  +P  L+     E++EVRGEV + K  F
Sbjct: 144 SLKYVHGKFTQAVTRGDGQTGEDITQNAKTIRNMPLWLADAADIELLEVRGEVLMPKAGF 203

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             LN        K +ANPRNAA+G LR+L+P+    R L F+ + + +        Q   
Sbjct: 204 ERLNRLAAEKEEKTFANPRNAAAGSLRQLDPSVAASRPLAFYAYSVNQGLLDTIDTQSAA 263

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  ++ +GF V+  V   +      +YY  + + R+ LP++IDG+V KV+  +LQ+QLG 
Sbjct: 264 LAWIKDIGFSVSA-VEVVSNPREAQTYYESIIATRADLPFEIDGMVIKVNSLALQQQLGF 322

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R PRW  ++KF  +   TRL  ID Q+GRTG +TPV +LEPV +GG  ++N TLHN  
Sbjct: 323 LSREPRWATAYKFPAETVMTRLHAIDWQVGRTGQITPVGKLEPVKVGGVTVSNVTLHNFG 382

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+ L           D+R GD V V RAG+VIPKV  +   +R  +++P   PS CP+C
Sbjct: 383 EIQRL-----------DVRAGDMVSVHRAGDVIPKVTRVWHEQRPENSEPVQLPSTCPVC 431

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S VV   +       A  RCTGGL C AQQ E L HFVSR A +I+GLG   L  FF+ 
Sbjct: 432 DSPVVLPKDE------ALARCTGGLFCPAQQQEALIHFVSRRAMDIDGLGASWLISFFEH 485

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L   Q     ++  +   G+ SV N+  +I   ++ +L RFI++L
Sbjct: 486 ----GLVKTVADIYQLHNHQ----EELVTLEKLGEKSVQNIISAIEASKHTTLSRFIYAL 537

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG   A++LA+ +             +             P VG I A+   +F++
Sbjct: 538 GIRGVGETTAQNLAQQFGDLDALMSASIEKLLLT----------PDVGAITAELAYKFFR 587

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            P NI  + AL +         +       ++ +  V TG L  + R +A+  +  LGA 
Sbjct: 588 APHNIEVITALREAGVHWDKVEQVVSEGLPLDGQTWVITGALDSMARDEAKAKLQALGAK 647

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S KT  ++ GD  GSK+ KA++LGVK++ EE+FL L+ +
Sbjct: 648 VSGSISAKTTALLAGDKAGSKMAKAEKLGVKVVGEEEFLALVGE 691


>gi|124267002|ref|YP_001021006.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1]
 gi|166215820|sp|A2SGT2|DNLJ_METPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|124259777|gb|ABM94771.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1]
          Length = 677

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/713 (33%), Positives = 370/713 (51%), Gaps = 47/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E      + L +++ YH   YY    P I D+EYD L     A+  A P L     P+ 
Sbjct: 5   AEDPAARAAQLREQLEYHAHRYYVLDAPEIPDAEYDRLFTELQALEAAHPGL---RTPDS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKKDD-NSIFFTL 130
           P  ++ G +   L  V H++P LS++   +       KF   +    +   D   + +  
Sbjct: 62  PTQRVIGAVLEGLSAVRHAVPMLSIKTETDTTPTGALKFDAAVRNALKLPPDAPPLRYAA 121

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K DG  I +RY+ G+ V AA RGDG +GEDV+  +  I ++P+ L      ++EVRGE
Sbjct: 122 ELKFDGLAINLRYQAGRLVQAATRGDGETGEDVTHTVGTIESVPKQLRGITAPVLEVRGE 181

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI 249
           V++ ++DF ALN+     G K + NPRNAA+GI+R+L+ +    R L+FF +GLG     
Sbjct: 182 VFMRRDDFEALNERQREAGLKTFVNPRNAAAGIVRQLDASIARQRPLSFFAYGLGDVQGW 241

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                   +L  +  LG PV+           + +++  + + R  LP+DIDG+VYKVDE
Sbjct: 242 DVPPTHAGLLDALAALGLPVDAHRTVVEGGEALAAFHAGIAAERDALPFDIDGVVYKVDE 301

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG ++R PRW ++HK+  ++ ST+L  I+IQ+GRTG LTPVA+L+PV +GG  +
Sbjct: 302 RALQQQLGFKSREPRWAVAHKYPAQEQSTQLAGIEIQVGRTGKLTPVAKLQPVFVGGTTV 361

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN   ++            + IR+GD V+V+RAG+VIP+VV  +   R      F
Sbjct: 362 SNATLHNRFELRR-----------KGIRIGDTVIVRRAGDVIPEVVGRVPVPRTAYIPNF 410

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S+ +R+      +    +RC+GGL C+AQ+ + L HF  R   +IEGLG 
Sbjct: 411 RMPRACPVCGSQALRE------RGSVDYRCSGGLFCAAQRKQALLHFAGRRMMDIEGLGD 464

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           IR   +++ L   +  +  ++      GD S  NL  ++   +  
Sbjct: 465 KLVEQLVD----GGIIRTLPELYRLGVAKLVALERM------GDKSAANLVAALEASKAT 514

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF+FSLGIRH+G   A+ LA+++ +                     L+ V  VG ++
Sbjct: 515 TLARFLFSLGIRHIGEATAKDLARHFGALDRVMDA----------SVEQLLEVNDVGPVV 564

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           AQ++  F+  P N   VE L                    +  K  V TGTL  + R  A
Sbjct: 565 AQSLRTFFDQPHNREVVEQLRAAGVHWDEHSGEADLTPRPLAGKTFVLTGTLPSLGREAA 624

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   G  V+  +S+KTD ++ G+  GSKLEKAQ LGV +++E     LL 
Sbjct: 625 KELIEAAGGKVAGSVSKKTDYVVAGEEAGSKLEKAQALGVAVIDEAALRALLD 677


>gi|118587526|ref|ZP_01544950.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163]
 gi|118431977|gb|EAV38719.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163]
          Length = 684

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/721 (33%), Positives = 385/721 (53%), Gaps = 55/721 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q  PIE L+  QA+ E+  L  E++     YY+   P + D  YDA   R  A+  A+P 
Sbjct: 6   QFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALERAYPS 65

Query: 65  LARSEDPNGPLNKIGG-----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
           LA    P+ P   +         +  L KV H +P LSL  +++I++L  +     +   
Sbjct: 66  LAM---PDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWDLVTTK--- 119

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
               +   + LE KIDG  I++RYE G+ + A+ RGDG  GE+V+  ++ I  IP+VL  
Sbjct: 120 -NAGSQQKYNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVL-- 176

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           N P  IEVRGE+Y+ K  F  LN +    G+  +ANPRNAA+G LR+L+P     R L+ 
Sbjct: 177 NEPLTIEVRGEIYMRKESFADLNRQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRRLSS 236

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F++   +   +    Q ++L++ R LGFPVN+  +  +    +  Y +E    R  LPY 
Sbjct: 237 FIYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPYG 296

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV++  ++ +LG   + PRW I++KF  ++A T + DI   +GRTG++TP A +
Sbjct: 297 IDGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAIM 356

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV++ G  +  A+LHN DY++            +D+R+GD V + +AG++IP+V  +I+
Sbjct: 357 DPVSLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVIL 405

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R  DAQ +  P +CP C+S++V            A RC     C AQ  E L HF SR
Sbjct: 406 KKRPADAQAYPIPVYCPSCKSKLVHVQGE------VALRCINP-ECPAQIKEGLIHFASR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +A NI+GLG + ++           IR  +D++ L   Q T+  K  ++      S  NL
Sbjct: 459 NAMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTTLDKFADL------SSKNL 508

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I++ R  S+ER I +LGIR VGA+ A+ LA ++ + +N        IA         
Sbjct: 509 IQAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIA--------- 559

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTG 656
             +  VG ++A AI +++ +      +  L              V  +    NK++V TG
Sbjct: 560 -EIDGVGQVMADAIRQYFNSESVASLINELENFQVNFDYLTTSTVDEKNYFFNKRIVLTG 618

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L    R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++NE+ F+ 
Sbjct: 619 KLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVINEQDFIN 678

Query: 717 L 717
           L
Sbjct: 679 L 679


>gi|289432483|ref|YP_003462356.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT]
 gi|288946203|gb|ADC73900.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT]
          Length = 680

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/714 (34%), Positives = 371/714 (51%), Gaps = 57/714 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L +EI+ H+  YY    P I D++YD L  R   +  A P+L     P+ P  K+G
Sbjct: 10  EVENLRREINRHNQLYYVQDNPEISDAQYDTLISRLKELEEAHPELV---TPDSPTQKVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            E   +   V H  P LSL   ++  +L  +  R+ +              EPK+DG  +
Sbjct: 67  AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLGNI---PFQIDCEPKMDGLAV 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y  GKF   A RGDG  GE+++  +R I +IP     N P + EVRGEVY+SKN F 
Sbjct: 124 ALTYRDGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNGFA 183

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEM 257
            LN E    G  P+ANPRNAA+G LR+L+P+    R L+ F++ LG + + +     +++
Sbjct: 184 KLNRERADKGLPPFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHWQI 243

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L     +GF +N   R  NT      YY +M + R++LPYD DG+V+KVD  SLQ +LG+
Sbjct: 244 LDYFSKIGFRINPLNRLVNTLEEAKEYYRQMAANRASLPYDADGVVFKVDSVSLQHRLGD 303

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             R PRW I++KF  +Q  TRL  I I +GRTG L P A LEPVN+GG ++  A LHNED
Sbjct: 304 VGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHNED 363

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS----- 432
            I             +DIR GD V+++RAGEVIP+VV  ++++R+P+++PF         
Sbjct: 364 DI-----------LRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNP 412

Query: 433 -----FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                 CP+C   + R          A H C   ++C AQ   +L+HFVSR A +I G+G
Sbjct: 413 NLNRPACPVCGGEIYRPAGE------AMHYCAN-VSCPAQFERQLEHFVSRGAMDIRGIG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       +       ++  +D++ L             +   G+ S  N+ D+I   + 
Sbjct: 466 ESLSVILAQQ----GLVKNVSDLYYLTTADLL------QLPRMGEKSADNIIDAIADSKT 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L+R IF LG+RHVG E A  L+++Y           NI A        L  +P +GD 
Sbjct: 516 RPLDRVIFGLGVRHVGNETATLLSRHYG----------NIWALAKTGLGELQTIPDIGDK 565

Query: 608 IAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           IA +IV ++   +N+  +       V  +  +   N +      + V TG L+   R +A
Sbjct: 566 IASSIVAYFSEEKNVAVIRRLEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSREEA 625

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           QE +  LG      +++ T  ++VG + GSKL KA+ +GVK ++E +F+ +L+Q
Sbjct: 626 QEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKARSMGVKELSEREFINMLEQ 679


>gi|195953269|ref|YP_002121559.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1]
 gi|254781349|sp|B4U8X0|DNLJ_HYDS0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|195932881|gb|ACG57581.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1]
          Length = 700

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/718 (34%), Positives = 399/718 (55%), Gaps = 52/718 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
             LS E+A K +++L + I+YHD  YY  ++P+I D+EYDA+ +   +I   +PDL    
Sbjct: 26  PKLSKEEAIKIINTLRELINYHDYRYYVLNQPVISDAEYDAIYKFLKSIEDNYPDLI--- 82

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+    ++  +++ +  +V H  P LSL+  +N +DLR F  R+     K     I + 
Sbjct: 83  TPDSLTQRVSSDISSTFPQVKHLAPMLSLDNTYNEDDLRDFDRRVKELSGK---EHIEYC 139

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEV 187
           +EPK DG  I++ YE   FV  A RGDG  GEDV+  ++ I TIP   + +   I  +E+
Sbjct: 140 VEPKYDGAGISLLYENDLFVRGATRGDGEVGEDVTKNLKTIKTIPLRANFSKQGIRLLEI 199

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL--G 244
           RGEV I+K+DF  +N+E +A    PYANPRN A+G +R  +P ++  R L   V+ +   
Sbjct: 200 RGEVIINKDDFKKINEERMAENLPPYANPRNLAAGSIRLQDPQEVVKRPLTALVYQITYV 259

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           + +    K  Y  ++ +  LGF      ++       ++ Y    +S R +LPY+IDG+V
Sbjct: 260 EPTNNMPKTHYGAIKMLHDLGFKTPFLDMKLCKNIQEVIDYCRYFESKRESLPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++ SL  +LG  + +PRW  + KF  KQA+T +LD+   +GR G +TPVA+LEPV++
Sbjct: 320 IKVNDISLYDELGFTSHAPRWATAFKFKAKQATTIILDVIFSVGRVGNITPVAKLEPVSL 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  I++ +L NED+I+            +DI + D V+++RAGEVIP VV ++   R  
Sbjct: 380 GGVTISSVSLFNEDFIR-----------EKDIHIKDTVIIERAGEVIPYVVSVVKEARPK 428

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+P  FP +CP C S++V+           A RC   ++C AQ + R++HF S+DA +I
Sbjct: 429 DAKPIVFPKYCPSCGSKLVKAPGE------VAWRCIN-ISCPAQVVLRIRHFASKDAMDI 481

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG+      + ++     ++  ADI+ L+               F   S  NL D+I 
Sbjct: 482 KGLGEAVAQLLYDAK----LVKNIADIYYLKFSDLVRL------PRFAKKSAQNLIDAIE 531

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +   L R ++ LGIR+VG   A+ LA YY       ++I NI+  + +D      +  
Sbjct: 532 ASKRRGLARVLYGLGIRYVGLTTAKKLASYY-------KDIWNIVKASEEDLR---NIED 581

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +GDI+A++I EF+   +NI  ++ L +E    +    + VS+++   + VFTGTL    R
Sbjct: 582 IGDIVARSIKEFFGLEQNINTIKRL-EEAGVLLKEVSEAVSNKLAGLQFVFTGTLSCCTR 640

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
             A++ V  LGA  S  ++  T  ++VG +PG +KL KA  LG+K ++EE+FL LL+ 
Sbjct: 641 EVARQMVESLGATTSDSVTHHTSYLVVGQDPGATKLRKANMLGIKTISEEEFLRLLED 698


>gi|94497003|ref|ZP_01303577.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58]
 gi|94423679|gb|EAT08706.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58]
          Length = 703

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/734 (38%), Positives = 419/734 (57%), Gaps = 48/734 (6%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +     L+  +A   L  L +E++ H+  Y+    P I D++YDAL R  +A+  AFP L
Sbjct: 1   MTDPAMLTEAEAANRLMRLAKEVAKHNRLYHDQDAPEISDADYDALIRENNALEAAFPHL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R++ PN    ++G     +L KV H++  +SL+  ++ ED+  F+ RI RF    DD  
Sbjct: 61  IRADSPNA---QVGAASTTALKKVPHAVRMMSLDNGFSDEDIADFLARIRRFLALPDDAP 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEI 184
           +  T EPKIDG   ++RYEKG+ V AA RGDG +GEDV+A +  I  IP+ L    IP++
Sbjct: 118 VALTAEPKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVHTIADIPQRLTGEAIPDL 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNF 238
            E+RGEVY++K DF+ALN  ++A    P     +ANPRNAA+G LR+ + T   +R L F
Sbjct: 178 FEIRGEVYMAKGDFVALNARLLAEAENPEKARQFANPRNAAAGSLRQKDATVTASRPLRF 237

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             HG G  S + A  Q  ++Q +   G PV++ +   ++   ++++Y  +++ R+ LP+D
Sbjct: 238 LAHGWGAHSALPADTQLGVMQAIAGWGLPVSDMLACVDSLDALIAHYRTIEAGRADLPFD 297

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q++LG  A++PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL
Sbjct: 298 IDGVVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRL 357

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG +++N TLHN D I  L            +R GDR++V+RAG+VIP+VVD + 
Sbjct: 358 TPVTVGGVVVSNVTLHNADEIARL-----------GVRPGDRIIVQRAGDVIPQVVDNLT 406

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R    +PF FP+ CP+C S  VR+            RCTGGL C AQ+ ERL+HFVSR
Sbjct: 407 --RDEAREPFPFPTHCPVCGSEAVREEGE------VDVRCTGGLICPAQRFERLRHFVSR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG++ +  F         I  PADIF L++ +     +     G+ + SV NL
Sbjct: 459 AALDIEGLGEKTIQEFLD----LGWIAEPADIFRLKKHRADLLGR----EGWKEKSVDNL 510

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I  +R     R +F LGIRHVGA  AR L K Y +         +I+A  +    S 
Sbjct: 511 LMAIEAKRQPDAARLLFGLGIRHVGAVTARDLLKRYATLPAIRALAQDIMALRDQPHDSQ 570

Query: 599 ----------IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
                     I V  VG  +  A+  F+  P N+ A + LL EVSP     E  VS+ + 
Sbjct: 571 AKMDKAIAEHIGVDNVGVAVGHALAHFFHEPHNVEAWDDLLSEVSPPPYVVETTVSA-VT 629

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +VFTG L+ + R +A+    ++GA  +  +S KTD+++ G   GSKL++A  LG+++
Sbjct: 630 GKTVVFTGKLETMSRDEAKAQAERMGAKAAGSVSAKTDLVVAGPGAGSKLKQATVLGIEV 689

Query: 709 MNEEQFLFLLQQYN 722
           + E+ +  +++   
Sbjct: 690 ITEQAWADIVKAAG 703


>gi|99081239|ref|YP_613393.1| DNA ligase, NAD-dependent [Ruegeria sp. TM1040]
 gi|122984289|sp|Q1GGT5|DNLJ_SILST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|99037519|gb|ABF64131.1| DNA ligase NAD-dependent [Ruegeria sp. TM1040]
          Length = 739

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/753 (38%), Positives = 426/753 (56%), Gaps = 59/753 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    AR E  +L+ +I   D  Y+Q   P + D++YD LKRR  A+A AFP LA+    
Sbjct: 1   MDEADARAEFEALQTKIEKADHDYHQKDAPTLSDADYDRLKRRYLALADAFPILAKDGT- 59

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
              +  +G        KVTH+   +SL   +  +D+  F   + R+     +  + FT E
Sbjct: 60  --RVASVGAPAASGFGKVTHAQRMMSLGNAFEDQDVEDFAVGLRRYLGLSSEAPLAFTAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYE GK V AA RGDG  GE+V+   R I  IP+ +S   PE++EVRGEV
Sbjct: 118 PKIDGLSLSLRYEAGKLVQAATRGDGAVGENVTENARTISDIPQEIS-GAPEVLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+S  DF ALN      G K +ANPRNAA+G LR+L+      R L FF +  G+ SE  
Sbjct: 177 YMSHADFEALNARHAETGGKIFANPRNAAAGSLRQLDAEITRARPLRFFAYSWGELSEPL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+ Q + ++++  LGF  N   R       ++++Y+ ++  R+ L YDIDG+VYKV++ S
Sbjct: 237 AETQIDAIERLASLGFQTNPLTRCCEQISELLAHYHAIEEQRADLGYDIDGVVYKVNDLS 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +GG +++N
Sbjct: 297 LQERLGFRSTTPRWAIAHKFPAELAWTHLEGIDIQVGRTGALSPVARLHPVTVGGVVVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI GLD+ G  +RGG+DIRVGD V + RAG+VIPKV D+ ++ R    + ++F
Sbjct: 357 ATLHNEDYIAGLDSKGAPIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSRRPEGTERYAF 416

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S  VR+      +  A  RC+GGL C AQ +E+LKHFVSR AF+IEGLG +Q
Sbjct: 417 PTRCPRCDSPAVRE------EGDAVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQ 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F         ++ PADIF LQ+R  +   +++N  G+G+ S + L+ +I  +R I  
Sbjct: 471 VEQFHSD----GWVKEPADIFELQQRYGSGLQQLKNREGWGEKSASALFAAIEDKRRIEF 526

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQ-------------------------------- 578
            R IF LGIRHVG   A+ LA ++ ++                                 
Sbjct: 527 ARLIFGLGIRHVGEVAAKDLALHFRTWSALAEAADLARAAALAHRAADEAEIVERQEAQA 586

Query: 579 -----------NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
                      N A     +   +   W  LI V  +G  +A ++ + + NP    A + 
Sbjct: 587 SARRAKISEARNAAVATCAVAPDSQAAWDDLISVDGLGPTVALSLSDAFANPEERAAFDR 646

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L+  +   I        S +  K +VFTGTL+K+ R +A+     LGA VS  +S+KTDI
Sbjct: 647 LIAHLEI-IEPDAPADDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDI 705

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ G   GSK  KA +LG++ ++E+ +L L+ Q
Sbjct: 706 LVAGPGAGSKAAKAAELGIQTLDEDGWLDLIGQ 738


>gi|220906114|ref|YP_002481425.1| NAD-dependent DNA ligase LigA [Cyanothece sp. PCC 7425]
 gi|254781305|sp|B8HV17|DNLJ_CYAP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219862725|gb|ACL43064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7425]
          Length = 738

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/747 (29%), Positives = 358/747 (47%), Gaps = 96/747 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+ +  L Q +      YY    PI+ D  YD L R    +   +P+L     P+ P 
Sbjct: 19  EIRQRVLELRQLVQRASYAYYVLDAPILEDVVYDQLYRELQDLETQYPELL---TPDSPT 75

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI-----FFTL 130
            ++G +       V H IP  SLE  + + D++ +  R  R  Q   + S       +  
Sbjct: 76  QRVGEQPATQFVSVQHRIPLYSLENAFAVADMQAWQDRWQRQGQAIGEQSATLRSPEYVC 135

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRG 189
           E KIDG+ + + YE G  V  A RGDG  GED++A +R I +IP  L   + P I+EVRG
Sbjct: 136 ELKIDGSALALTYENGVLVRGATRGDGVYGEDITANVRTIRSIPLRLDWPDPPPIVEVRG 195

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG---- 244
           E ++  + F  LN E    G   +ANPRNAA+G LR+L+   +  R L+FF + L     
Sbjct: 196 EAFLPLDVFHRLNQEREQAGESLFANPRNAAAGTLRQLDARIVAKRRLDFFAYTLHLPLA 255

Query: 245 ----------------------------------------KTSEIFAKGQYEMLQKMRCL 264
                                                     +    + Q++ L+ ++ +
Sbjct: 256 SARSATQPAAAQQLDLLAVAQSDPAVAAQQLDLSSASQAESVTTHLPQTQWQSLELLQQI 315

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF VN   +   T   +  YY+     R  LPY  DG+V K++   LQ+ LG   + PRW
Sbjct: 316 GFRVNPHRQLCPTLADVRQYYDHWNHGRLDLPYMTDGVVVKLNSLRLQEHLGFTQKFPRW 375

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I+ K+  +QA T +L+I + +GRTG LTPVA L PV + G  ++ ATLHN D +  L  
Sbjct: 376 AIAWKYEPEQAVTEVLNISVNVGRTGALTPVAELRPVQLAGTTVSRATLHNRDRLAEL-- 433

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                    D+ +GD+V++ +AGE+IP+++ +    R  DA+P+  P+ CP C   VV+ 
Sbjct: 434 ---------DLHIGDKVVIHKAGEIIPEILQVFPELRPADARPYQLPTHCPECGQPVVQP 484

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
           ++       A  RC   ++C A     + H+V RDA +I+G+G++ +            +
Sbjct: 485 VDE------AVTRCLN-VSCPAIVRGAIVHWVGRDAMDIDGVGEKLVRQLVDR----GLV 533

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
              AD++ L   Q  +  ++ N           +  +I K ++    R ++ LGIRHVG+
Sbjct: 534 NSVADLYRLTVAQLLTLERMGN------KLAEKVVAAIAKSQSRPWSRVLYGLGIRHVGS 587

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A+ L   + S       +  ++A + +D  +   V  +G  IAQ+IV+++Q P N   
Sbjct: 588 VNAQVLTTAFPS-------VERLMAASAEDIEA---VHGIGPEIAQSIVQWFQTPANHSL 637

Query: 625 VE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           +E    A ++    ++      +   +  K  V TGTL  + R +A+  + Q G  V+  
Sbjct: 638 IEQLSAAGVQLAQDTVAVPPSQLPQPLAGKTFVLTGTLPTLSRDEARSMIGQAGGKVTDS 697

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           +S+KTD ++VG + GSKL+KA QLG+ 
Sbjct: 698 VSKKTDFLVVGADAGSKLDKAGQLGIP 724


>gi|289422752|ref|ZP_06424592.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L]
 gi|289156931|gb|EFD05556.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L]
          Length = 700

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/721 (33%), Positives = 375/721 (52%), Gaps = 50/721 (6%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           ++ + I I +L I+ AR  +  L   ++YH D YY    P I D +YD + R    +   
Sbjct: 13  EEIEDIDIGSLDIDGARDLVGDLTYTLNYHSDSYYNKDNPEISDYQYDRMMRCLIGLEDK 72

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           +PDL     P+ P  ++GG       +  H  P LSL  +++ E++R F  R+       
Sbjct: 73  YPDLKA---PDSPSVRVGGRALEKFDQYRHQRPMLSLGNVFSEEEIRDFDRRVR----SS 125

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
               + + +E KIDG  + + Y++G     A RGDG  GE+V+  I+ I TIP  +  + 
Sbjct: 126 VSGDVNYVVEFKIDGLSVGLTYDQGVLQIGATRGDGFIGENVTDNIKTIKTIPIKIDEDR 185

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
             I   RGEVYISK DF A+N   I      YANPRN A+G LR+L+      R L+ F+
Sbjct: 186 KLIA--RGEVYISKADFEAVNAYQIDHDLPVYANPRNLAAGSLRQLDSRLAAKRPLDIFI 243

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
             L    E+  K   E  + M  LG  +N G +       ++ +       R  L YDID
Sbjct: 244 FNLENMDELGIKKHSESFEYMESLGLKINKGYKLCTNIDEVIDHIEYWTDKRGQLDYDID 303

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVD    ++ LG  A+SPRW  ++KF  ++  T+LLDI+I++GRTG LTP A LEP
Sbjct: 304 GMVIKVDSLDQREVLGFTAKSPRWATAYKFPAEKKKTKLLDIEIEVGRTGTLTPTAVLEP 363

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           + + G  ++ A+LHNEDYIK            RDIR+GD VLV++AGE+IP+V+++  +E
Sbjct: 364 IRLAGTSVSRASLHNEDYIK-----------ERDIRIGDTVLVQKAGEIIPQVLEVDFDE 412

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R      F  P  CP+C    VR          AA +C   ++C AQ    + HFVSRDA
Sbjct: 413 RDGSEIVFEMPKHCPVCGEETVRLEGE------AAVKCIN-ISCPAQIRRGIIHFVSRDA 465

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IEG+G+  +      E     I+  AD++ L           E +   G  SV NL  
Sbjct: 466 MDIEGMGESIVKLLLDKE----LIKDIADLYYLDPNDL------EQLERMGKKSVANLMA 515

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           SI K +   L R I  LGI+ VG + A+ LAK Y         ++ I+A +++D    I+
Sbjct: 516 SIEKSKTNELWRLINGLGIKFVGLKGAKLLAKAY-------NNLDEIMAASSEDL---IK 565

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTL 658
           +   G I++ ++ +F++  +N   +E L +         E+        E  K+V TGTL
Sbjct: 566 IDEFGTIMSDSVEKFFEEDKNKETIEKLRRAGLNFENIKEEKTDRPMLFEGMKIVLTGTL 625

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             ++R+ A++ +  LG   ++ +S+ TD ++ G+  GSKL+KA  LGVK+++E +F+ +L
Sbjct: 626 PTMKRNDAKKIIEDLGGRATSSVSKSTDFVLAGEEAGSKLDKAISLGVKVIDEARFVSIL 685

Query: 719 Q 719
            
Sbjct: 686 D 686


>gi|295692390|ref|YP_003601000.1| DNA ligase [Lactobacillus crispatus ST1]
 gi|295030496|emb|CBL49975.1| DNA ligase [Lactobacillus crispatus ST1]
          Length = 668

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/716 (29%), Positives = 368/716 (51%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++  +L+ F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++      
Sbjct: 172 GECYMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +QKM  LGF  N   R+      + ++ +E  + R++L Y IDG+V K+D
Sbjct: 232 E-EITSQHQAIQKMHDLGFHTNETGRKLKILDEVFAFIDEYTAKRNSLTYGIDGIVLKID 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  
Sbjct: 291 DLGIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN DY+             + IR+GD V + +AG++IP++ ++++ +R  D+  
Sbjct: 351 VARASLHNPDYLN-----------EKGIRIGDTVKLHKAGDIIPEISEVVMAKRPADSVA 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG
Sbjct: 400 YQIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +      +     +   AD++ L             +  F + S+ NL  +++  + 
Sbjct: 453 PKIVKQLIAKD----LVHNVADLYHLTADDLA------QLDHFKEKSINNLLTALDNSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  I  LGI HVGA+ AR +A+ + +               + D   +  +  +G  
Sbjct: 503 NSVELLITGLGIDHVGAKAARLIAQKFKNLAKIM----------SLDVQEIASIDTIGMT 552

Query: 608 IAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++  ++  P     ++ L                +   +  ++K +V TG L+   R
Sbjct: 553 IAESMTTYFAQPEAQKVIDELRESALNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +  ++
Sbjct: 613 SEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 668


>gi|320102706|ref|YP_004178297.1| NAD-dependent DNA ligase [Isosphaera pallida ATCC 43644]
 gi|319749988|gb|ADV61748.1| DNA ligase, NAD-dependent [Isosphaera pallida ATCC 43644]
          Length = 896

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/724 (31%), Positives = 383/724 (52%), Gaps = 52/724 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M    L+P    + +  R  +  L +EI +H+  YY  + P+I D+EYD L +  +A+  
Sbjct: 1   MTTSLLVP---TTDDPIRDRIERLRREIEHHNRLYYVEAAPVISDAEYDRLVKDLEALEA 57

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GG        V H++P LS++  ++  +LR++ TR+ +    
Sbjct: 58  ERPDLV---TPDSPTQRVGGAPLGEFITVEHTVPMLSIDNAYSEAELREWATRVRKGLTS 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL- 179
            +   I + +E KIDG  I +RYE G+ V A  RGDG  G+D++A  R I  IP VL   
Sbjct: 115 TE--PIHYVVELKIDGVAIGLRYENGRLVRAVTRGDGERGDDITANARTIHDIPLVLDER 172

Query: 180 --NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
               PE++EVRGEV++++++   LN      G  PYAN RN  +G L++L+P  +  R L
Sbjct: 173 RTPAPEVLEVRGEVFMTESELARLNQLRREAGEPPYANSRNLTTGTLKQLDPRQVAKRRL 232

Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
            F  HGLG+T  +  +  + +L+++R  G P+     + +    +  +    K  R++L 
Sbjct: 233 RFTTHGLGETRGLELRSYWAILERLRDWGLPIGPHHARYDDIEAVWRHIQTWKIQRASLD 292

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           +  DG+V KVD+   +++LG R++SPRW ++ K+  +QA T++  + IQ+G+TG LTPVA
Sbjct: 293 FRTDGVVVKVDDLGQRERLGTRSKSPRWALAFKYDAEQAITKVRGVTIQVGKTGKLTPVA 352

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            LEPV + G ++  A+LHN + I             +D+R+GD V+V++AGE+IP+VV +
Sbjct: 353 ELEPVLLAGTIVKRASLHNPEEIAR-----------KDVRIGDTVVVEKAGEIIPQVVRV 401

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT-GGLACSAQQLERLKHF 475
              +R    QPF FP+ CP  ++ VV+             RC    L C  Q  E L  F
Sbjct: 402 RTEDRDGTEQPFVFPTRCPCDRADVVKPPGE------VDVRCPIPALQCHRQFKEWLAWF 455

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
             RDA +I+GLG++ +D   +       ++ PAD++ L      +  ++      G  S 
Sbjct: 456 AHRDAMDIDGLGEKLIDQLVER----GLVKTPADLYRLDVPTLAALDRM------GKKSA 505

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL  +I   ++ SL+R +  L IRHVG   A +LA+ + + +       + +       
Sbjct: 506 ENLVKAIAASKSRSLDRLLVGLTIRHVGVGSAETLARKFGTLEALRAATIDELKA----- 560

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLV 653
                VP +G+I+A+++ ++ ++P NI  ++ LL               +   +  K +V
Sbjct: 561 -----VPDIGEIVAESVFQYLRDPANIAMIDDLLSVGVSPTAPPVIVARAGLPLAGKTVV 615

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL  ++R  A++ +  LG  VS  +S+ T +++ G + GSKL  A +LGV +++E  
Sbjct: 616 LTGTLPTLKRSAAEDLIKSLGGKVSGSVSKTTSLVVAGADAGSKLVNALKLGVTVIDEAT 675

Query: 714 FLFL 717
            L L
Sbjct: 676 LLAL 679


>gi|330994412|ref|ZP_08318338.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
 gi|329758538|gb|EGG75056.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
          Length = 712

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/712 (37%), Positives = 394/712 (55%), Gaps = 37/712 (5%)

Query: 13  SIEQ----ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++EQ    A K L+ L   +   D  Y+Q+  P++ D+ YD+L++    +   FPDL R+
Sbjct: 23  TMEQDAPNAEKALTQLATLLPALDAAYHQHDAPLVDDATYDSLRQLNTRLEARFPDLRRT 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SI 126
              + P  ++G        +  H +P LSL+ +++ E+   FI+RI RF    ++    +
Sbjct: 83  ---DSPAQQVGAPATGPFRRHRHMVPMLSLDNVFSREEFEGFISRIARFLGLDEEQARQL 139

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            F  EPKIDG  I++ YE G+FV    RGDG  GEDV+A +R +  IP  L    P++IE
Sbjct: 140 SFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDIPDQLPAPCPDVIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGK 245
           +RGEV++SK  FL LN      G +P+ANPRNAA+G LR+L+     R  L+ F +  G 
Sbjct: 200 IRGEVFLSKQAFLELNAAQERAGDRPFANPRNAAAGSLRQLDAGITARRPLSLFAYAAGY 259

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A   +  L ++   GF VN    Q        ++   +   RS L YDIDG+VYK
Sbjct: 260 CSAPLAATHHGYLAQLAAWGFRVNPLSTQVKDAGAAEAFMERLTLERSALDYDIDGIVYK 319

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +D+ +LQ++LG   R+PRW ++ KF  +QA TRL  IDIQ+GRTG LTPVA LEPVN+GG
Sbjct: 320 LDDRALQERLGFAGRAPRWAVAWKFPAEQAVTRLEKIDIQVGRTGALTPVAFLEPVNVGG 379

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++T A+LHNED I             +DIR GD V V+RAG+VIP+V  +++  R  D 
Sbjct: 380 VMVTRASLHNEDEITR-----------KDIREGDLVHVQRAGDVIPQVTGVVL-PRDHDR 427

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP  CP C +   R             RC+GGL C AQ +ERL HFVSRDAF+IEG
Sbjct: 428 PPYRFPHVCPACGAHAERPEGE------VVWRCSGGLTCPAQVVERLIHFVSRDAFDIEG 481

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + +  F +       +R PADIF L   +    ++     G+G VS  NL  +I  R
Sbjct: 482 LGDRTIVEFHE----LGWLRTPADIFRLDAHEAEIASR----DGWGRVSAHNLVTAIAAR 533

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I L R I++LGIR +G   AR LA++Y S  N+  ++       +D  L L  +  +G
Sbjct: 534 RTIELSRLIYALGIRRIGINNARLLARHYGSLANWRAQMEKAAVIGSDARLELGSITGIG 593

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             IA  +V F+    N   ++ L   +   +   +      +  + +VFTGTL  + R +
Sbjct: 594 TAIADELVAFFAEAHNRATLDDLTHVLD-HVTDEQAVAEGTLSGRTIVFTGTLTTMTRPE 652

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A+    +LGA VS  +S KTD++++G+  GSK  KA +LG++ M+E  +  L
Sbjct: 653 ARAVAERLGARVSDSVSTKTDLVVLGEKAGSKARKAAELGIRTMDEAGWRVL 704


>gi|302554316|ref|ZP_07306658.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM
           40736]
 gi|302471934|gb|EFL35027.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM
           40736]
          Length = 731

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/741 (29%), Positives = 357/741 (48%), Gaps = 62/741 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR++ + L ++I  H   YY    P++ D+E+D L R  +A+   +P+L     P+ 
Sbjct: 13  PAEAREKHARLAEQIEEHRFRYYVKDAPVVSDAEFDQLLRSLEALEDEYPEL---RTPDS 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  +N E+L  +  RI R   ++D +   F  E K
Sbjct: 70  PTQKVAGAYATEFTAVEHRERMLSLDNTFNEEELAAWAERIARELGEQDYH---FLCELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L  + +P+++E+RGEVY
Sbjct: 127 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPERLKGDRVPDLVEIRGEVY 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 187 FPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGALEGFTG 246

Query: 252 KGQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +  +    +   G P +   R  +   G++ +       R ++ ++IDG+V K+DE  
Sbjct: 247 LTRLSQAYDLLGTWGLPTSRHNRVVDGLEGMLEFIAHYGENRHSVEHEIDGVVVKLDEIP 306

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +R+PRW I++K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  
Sbjct: 307 LQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 366

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 367 ATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 415

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +         +     RC     C AQ  ERL +   R A +IE  G   
Sbjct: 416 PAECPECGTAL-----RPMKEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVA 470

Query: 491 LDFFFKSEDPAF-SIRIPADIFTLQRRQQ--------------------TSTTK----IE 525
                   +P    +    D+F L   Q                     T   K      
Sbjct: 471 AAALTAPLEPKDPPLVDEGDLFDLTIDQLLPIKAYVLDPDSGLPKRDPKTGEEKVATIFA 530

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   + ++I   +   L R I SL IRHVG   A +LA+ + S +   Q   
Sbjct: 531 NQEGNPRKNALAMLENIAAAKERPLARIITSLSIRHVGPVAAEALAREFRSIERIDQATE 590

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643
             +A              VG  IA ++ +++    +   +                E   
Sbjct: 591 EELAVT----------EGVGPTIAASLKQWFAEDWHREIIRKWKAAGVRMEAESTGEDEG 640

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGD+PGSK +KA Q
Sbjct: 641 PRPLEGLTVVVTGTLEHFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQ 700

Query: 704 LGVKIMNEEQFLFLLQQYNTT 724
           L V ++NE+ F  LL+Q    
Sbjct: 701 LKVPVLNEDGFGVLLEQGPDA 721


>gi|260102794|ref|ZP_05753031.1| DNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260083398|gb|EEW67518.1| DNA ligase [Lactobacillus helveticus DSM 20075]
          Length = 689

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/720 (30%), Positives = 375/720 (52%), Gaps = 53/720 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q + +  +++++A+KE +SL  ++    D YY    P + D+ YD    R   +  AFP+
Sbjct: 18  QEVKMAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPE 77

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           +     P+    ++GGE++    KV H IP LS+  +++ ++L++F  R+ +       +
Sbjct: 78  IV---TPDSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRMQKLVG----H 130

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + + +E KIDG  +++ Y+ GK V A+ RG+G+ GEDV+A  R I  IP+VL    P  
Sbjct: 131 PVEYNVELKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPE--PLT 188

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           IEVRGE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++  
Sbjct: 189 IEVRGECYMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTW 248

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     Q++ +++M  LGF  N   R+      +  + +E  + R++L Y IDG+V
Sbjct: 249 VNPP-REITSQHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGIV 307

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD+ SL++QLG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV +
Sbjct: 308 LKVDDLSLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQL 367

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  A+LHN DY+             + +R+GD V + +AG++IP++ ++++++R  
Sbjct: 368 AGTTVARASLHNPDYLN-----------EKGVRIGDTVKLHKAGDIIPEISEVVLSKRPA 416

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+ P+  P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI
Sbjct: 417 DSVPYEIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMNI 469

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GLG + +      +     +   AD++ L             +  F + S+ NL  +I+
Sbjct: 470 AGLGPKIVKQLIAKD----LVHNVADLYHLTEDDLA------QLDHFKEKSINNLLTAID 519

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  S+E  I  LGI HVGA+ AR +A+ + + +         IA           +  
Sbjct: 520 NSKKNSVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSLGVQDIA----------SIDT 569

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQ 659
           +G   A+++  ++  P     +E L +             E+   +  ++K +V TG L+
Sbjct: 570 IGMTTAESMTTYFAQPEAQKLIEELRESGLNMDYLGADEPEEAPDNPFKDKTVVLTGKLE 629

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +  + +  LGA V+  +S KTD +I G + GSK  KA+QLGV ++ EE+ +  ++
Sbjct: 630 HYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEAIAQIE 689


>gi|161507068|ref|YP_001577022.1| DNA ligase [Lactobacillus helveticus DPC 4571]
 gi|190359262|sp|A8YTZ3|DNLJ_LACH4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160348057|gb|ABX26731.1| DNA ligase [Lactobacillus helveticus DPC 4571]
          Length = 668

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/716 (30%), Positives = 373/716 (52%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL  ++    D YY    P + D+ YD    R   +  AFP++   
Sbjct: 1   MAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GGE++    KV H IP LS+  +++ ++L++F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+G+ GEDV+A  R I  IP+VL    P  IEVR
Sbjct: 114 NVELKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPE--PLTIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++      
Sbjct: 172 GECYMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q++ +++M  LGF  N   R+      +  + +E  + R++L Y IDG+V KVD
Sbjct: 232 -REITSQHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + SL++QLG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  
Sbjct: 291 DLSLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN DY+             + +R+GD V + +AG++IP++ ++++++R  D+ P
Sbjct: 351 VARASLHNPDYLN-----------EKGVRIGDTVKLHKAGDIIPEISEVVLSKRPADSVP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMNIAGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +      +     +   AD++ L             +  F + S+ NL  +I+  + 
Sbjct: 453 PKIVKQLIAKD----LVHNVADLYHLTEDDLA------QLDHFKEKSINNLLTAIDNSKK 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  I  LGI HVGA+ AR +A+ + + +         IA           +  +G  
Sbjct: 503 NSVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSLGVQDIA----------SIDTIGMT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            A+++  ++  P     +E L +             E+   +  ++K +V TG L+   R
Sbjct: 553 TAESMTTYFAQPEAQKLIEELRESGLNMDYLGADEPEEAPDNPFKDKTVVLTGKLEHYTR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + +  LGA V+  +S KTD +I G + GSK  KA+QLGV ++ EE+ +  ++
Sbjct: 613 SEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEAIAQIE 668


>gi|78188256|ref|YP_378594.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3]
 gi|123743484|sp|Q3ATX4|DNLJ_CHLCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78170455|gb|ABB27551.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3]
          Length = 667

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/710 (31%), Positives = 367/710 (51%), Gaps = 46/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I  A + ++ L QEI  H+  Y+  +KP + D E+D L     A+   FPDL     P
Sbjct: 1   MTIIDASERIAQLRQEIERHNYLYFNEAKPELSDYEFDKLLEELMALEREFPDLL---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      VTH  P LSL   ++  ++ +F  R+ +    ++ +      E
Sbjct: 58  DSPSQRVGGTITKEFPVVTHREPMLSLANTYSAGEVAEFYNRVAKLLAAENVHKQEMVAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++ Y  G  V  A RGDG  G+D++  IR I +IP  L   +   +EVRGE+
Sbjct: 118 LKFDGVAISLLYRDGVLVRGATRGDGVQGDDITPNIRTIASIPLRLHQPLAGEVEVRGEI 177

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
           ++ K DF  LND       + +ANPRNA +G L+  +  ++ R  +NF  + L    +  
Sbjct: 178 FMRKEDFEQLNDNRPE--EERFANPRNATAGTLKLQDSAEVARRRMNFVAYYLKGLKDET 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L K+  LGF      R+  T   I ++ NE +  R  LPY+ DG+V K++   
Sbjct: 236 LD-HVSRLHKLEALGFTTGGHYRRCKTIEEINTFINEWEEKRWKLPYETDGVVLKLNNVQ 294

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L +QLG  A+SPRW I++K+  +QA T+L ++  Q+GR G +TPVA L PV + G+ ++ 
Sbjct: 295 LWEQLGATAKSPRWAIAYKYPAQQARTQLCNVVFQVGRIGTITPVAELTPVLLAGSTVSR 354

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           +TLHN D I+ L            + + D V+++++GEVIPKVV  + +ER  DA   + 
Sbjct: 355 STLHNFDEIERLS-----------VMILDYVMIEKSGEVIPKVVRTLPDERPADAHAIAI 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +++  N        +  C     C AQ   RL HF SR+A +I+GLG   
Sbjct: 404 PTHCPECDTPLIKPENE------VSWYCPNEEHCPAQIRGRLLHFASRNAMDIKGLGDAL 457

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           +    D++ LQ  Q       E +   G  S  NL  ++++ R  S 
Sbjct: 458 VEQLV----AWGLVHDVGDLYLLQEPQL------ERMERMGKKSAQNLIRALDESRTRSY 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R +++LGIRHVG   AR LA  + +     Q     +A           VP +G  +AQ
Sbjct: 508 DRLLYALGIRHVGRATARELAHAFPTLDALMQANEERLA----------EVPDIGTTVAQ 557

Query: 611 AIVEFYQNPRNICAVE--ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +IV+F+  P +   V+     +    +     + V+   E   L+FTGTL++  R +A E
Sbjct: 558 SIVDFFAKPSSRQLVDKLREARLQLAASASKIEQVNRNFEGMSLLFTGTLERYTRQQAAE 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            V + G  V   +S+KT +++ G + GSKL+KA +LGV++++E++F+ ++
Sbjct: 618 LVVERGGRVVESISKKTSLLVAGRDGGSKLDKAHKLGVRVISEDEFMGMM 667


>gi|313679715|ref|YP_004057454.1| DNA ligase, nad-dependent [Oceanithermus profundus DSM 14977]
 gi|313152430|gb|ADR36281.1| DNA ligase, NAD-dependent [Oceanithermus profundus DSM 14977]
          Length = 670

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/716 (30%), Positives = 365/716 (50%), Gaps = 50/716 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+A + ++ L   I  H+  YY   +P I D+EYDAL R    +  AFP+L     P
Sbjct: 1   MTREEAARRVAELTWAIRRHNHLYYVLDRPEISDAEYDALVRELAELEAAFPEL---RSP 57

Query: 72  NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P N++G  +   S   VTH  P  SL+  +  +++  F  R+ R    +    + + L
Sbjct: 58  ASPTNQVGAGVLGASFEPVTHPTPLYSLDNAFGPDEIAAFEERVARALGTEP--PLEYAL 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  I + YE G+ V+ A RG+G  GE+V+  +  +  +P  L    P  +EVRGE
Sbjct: 116 EYKIDGLSINLLYEGGRLVWGATRGNGRVGEEVTQNLLTVRDVPSRL-EGAPPRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK-TSE 248
           VY+ +  FL LN      G  P+ NPRNAA+G +R+ +P     R L  + +G+G+  +E
Sbjct: 175 VYMPREVFLELNRAREEAGELPFKNPRNAAAGAVRQKDPRIAAERRLAAYFYGVGEGAAE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + A+ Q E+L ++  LG PV    R A    G+   Y +M + R  LP++ DG   KV++
Sbjct: 235 LRARTQLELLDRLEALGLPVEPHRRSAVGAAGVEEAYRQMLARRDALPFEADGATVKVND 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++LG  A+SPRW +++KF  ++  TR+ ++  Q+GRTG +TPVA L PV + G  +
Sbjct: 295 LEAQRRLGHTAKSPRWAVAYKFPAEEKETRIEEVVFQVGRTGRITPVAHLTPVQLDGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHN+ +I+ L           D RVGD V + ++G +IP+++ +I  +R    +P 
Sbjct: 355 SRVTLHNKAFIEEL-----------DARVGDAVRLHKSGGIIPEILRVIKEKRTGKEEPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C + +V        +    HRC   L C A+  ++L+H+ SR A +++GLG+
Sbjct: 404 VFPYHCPECGANLV--------EDGKIHRCPNPL-CPAKAFQQLRHWASRRAMDVQGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       ++  AD++ L +       ++      G+ S  NL   + + +  
Sbjct: 455 KLIEQLLEK----GLVKDAADLYRLGKEDLAGLERM------GEKSAENLLVQLEESKGR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER ++ LGI  VG  +AR+LA+ + + +   +     +            VP VG + 
Sbjct: 505 GLERALYGLGIPQVGEALARTLARRFGTIEKLMEAGEEELEA----------VPDVGPVT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A  I     + R    +  L +       +  +     +    +V TG L +  R + +E
Sbjct: 555 AAEIRRALADERMRSLIRRLKEAGVSFEAKQAQPAEQPLAGLTIVLTGELSRP-RSEVKE 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            +  LGA V+  +SRKT  ++ G   GSKL+KA++LGV +++E     LL +    
Sbjct: 614 ELEALGAKVAGSVSRKTSYVVAGPGAGSKLKKARELGVPVLDEAGLAALLAERGAA 669


>gi|307244055|ref|ZP_07526174.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678]
 gi|306492579|gb|EFM64613.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678]
          Length = 702

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/710 (33%), Positives = 378/710 (53%), Gaps = 47/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++A   +  L + ++YH D YY    P I D +YD L +    +  AFP+  +    
Sbjct: 22  ISKKEAGLMVGDLIEILNYHSDRYYNSDSPEISDMDYDRLMKSLILLEEAFPEYKKK--- 78

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +  H  P LSL  ++N E++R F  R+    +   +  + + +E
Sbjct: 79  DSPTVRVGGRALDKFDQYQHERPMLSLSNVFNNEEIRDFDRRVRGGLE-PANGQVNYVVE 137

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + YE G     A RGDG+ GE+V+  I+ I +IP  + ++    +  RGEV
Sbjct: 138 TKIDGLSVGLTYEDGYLRVGATRGDGYIGENVTENIKTIASIP--IKIDEKRKLVARGEV 195

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           YISK+DF A+N        + YANPRN A+G LR+L+P     R L+ F+  L    ++ 
Sbjct: 196 YISKSDFEAVNAYQEDHDLQTYANPRNLAAGSLRQLDPKLAAKRPLDIFIFNLENIDDLG 255

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   +    M+ LG  VN   +       ++ Y       RS+LPY+IDG+V KVD  +
Sbjct: 256 IEKHSQSFDYMKSLGLKVNEEYKLCKDIEEVIDYIEYWTENRSSLPYEIDGMVIKVDSIA 315

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG  A+SPRW  + KF  ++  T+LLDI++++GRTG +TP A LEPV + G +++ 
Sbjct: 316 QREALGFTAKSPRWATAFKFPAERKKTKLLDIEVEVGRTGTITPTAILEPVRLAGTMVSR 375

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYIK            RDIR+GDRVLV++AG++IP+VV++ +++R      F  
Sbjct: 376 ATLHNEDYIK-----------ERDIRIGDRVLVQKAGDIIPQVVEVSLDDRTGQEVMFDM 424

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C    VR          AA +C   ++C AQ    + HFVSRDA +IEG+G+  
Sbjct: 425 PHECPACGQETVRLDGE------AAVKCIN-ISCPAQIRRGIIHFVSRDAMDIEGMGESI 477

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            I+  AD++ +      S  ++         SV NL  SI K ++  L
Sbjct: 478 ITSLLDK----GVIKDIADLYYMDPDILVSLDRMGQ------KSVANLMASIEKSKSNDL 527

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R I  LGIR VG + A+ LA    S       ++ I+A + +D    I++   G I++ 
Sbjct: 528 WRLINGLGIRFVGVKGAKLLADACGS-------MDKIMAASEEDL---IQIEEFGQIMSD 577

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++V+F+   +N   VE L +       I + ++ ++   E  K+V TGTL  ++R+ A+ 
Sbjct: 578 SVVKFFHEDKNKLTVEKLRQAGLNMEVIEKEDQGIAKVFEGMKIVLTGTLPSMKRNDAKA 637

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + +     ++ +S+ T  ++ G+  GSKL+KA  LGVK+++E +F+ L+
Sbjct: 638 LIEERAGKATSSVSKSTSFVLAGEEAGSKLDKALSLGVKVIDEAKFMELV 687


>gi|254495534|ref|ZP_05108458.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152]
 gi|85819890|gb|EAQ41047.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152]
          Length = 665

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/708 (30%), Positives = 367/708 (51%), Gaps = 48/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++ +  L  E++ H+  YY      I D E+D   +  D +    P      D N P 
Sbjct: 2   NVQERIIELRNELNRHNYNYYVLDNATISDFEFDIKLKELDKLEQENPLFF---DANSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +   V H     SL+  ++ +DL  +  RI +         I +T E K D
Sbjct: 59  QRVGGTITKNFNTVVHKNRMYSLDNSYSKDDLLDWEKRIQKILGTT---EISYTCELKYD 115

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + YE G+F+ A  RGDG  G++V+  I+ I +IP  +  +     E+RGE+ +  
Sbjct: 116 GASINLTYENGQFIKAVTRGDGFQGDEVTNNIKTILSIPLSIQDDFVSNFEMRGEIILPL 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
           + F  +N E +A G + Y NPRN ASG L+  +  ++  R L+  ++ +  T E   K  
Sbjct: 176 DGFNKMNQERVANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQVV-TEERKYKTH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L++ R +GF V   ++  N+   +  + N   + R  LPY+ DG+V KV+    Q++
Sbjct: 235 FESLEQARKVGFKVPKTIKLVNSIDEVFEFVNLWDTKRQDLPYETDGIVIKVNNLQQQEE 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +++PRW I++KF  +Q +T L +I  Q+GRTG +TPVA L+PV + G  +  A+LH
Sbjct: 295 LGYTSKAPRWAIAYKFKAEQEATLLNEITYQVGRTGAITPVANLDPVQLAGTTVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L           D+R+ D V V++ GE+IPK+V +  ++R  +++P  + + C
Sbjct: 355 NADQIEKL-----------DVRINDTVFVEKGGEIIPKIVGVDFSKRPENSEPTVYATNC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +VR          A H C     C+ Q   R++HF+SR A +I+GLG + +D  
Sbjct: 404 PECGTELVRTAG------DAKHYCPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLL 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            K       I+  AD++ L         K+  +    + S  NL + I K + I  E+ +
Sbjct: 458 RKE----GLIQNYADLYELT------VEKVLPLERIAEKSAKNLINGIEKSKEIPFEKVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ LAK++ S  N              D+ +L+ V  +GD IAQ+I++
Sbjct: 508 FALGIRFVGETVAKKLAKHFKSIDNLMAA----------DFETLVAVDEIGDRIAQSIID 557

Query: 615 FYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F  N  +I  V  L +            +N + +++ +  V +G   ++ R + ++ +  
Sbjct: 558 FSSNLTSIQLVNRLKEAGLQLSVSAESLENQTDKLKGQIFVVSGVFHQMSRTELKKAIED 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  VS+ +S+KT+ I+ GDN G SKL KA+ LG++I++E+ F+  + 
Sbjct: 618 NGGKVSSSISKKTNFIVAGDNMGPSKLAKAETLGIQIISEQDFINKIA 665


>gi|257054924|ref|YP_003132756.1| NAD-dependent DNA ligase LigA [Saccharomonospora viridis DSM 43017]
 gi|256584796|gb|ACU95929.1| DNA ligase, NAD-dependent [Saccharomonospora viridis DSM 43017]
          Length = 731

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/727 (30%), Positives = 362/727 (49%), Gaps = 44/727 (6%)

Query: 5   QLIPIEAL--SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           +  P+E +     + R+  S+L +EI  H   YY    P I D+E+D L R  + +    
Sbjct: 32  RTTPVEGIQDVPAEVRERHSALVEEIRGHQFRYYVLDAPTISDAEFDQLMRDLERLEAEH 91

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P L     P+ P   +GG  +       H    LSL+ ++++++L+ +I R+ R      
Sbjct: 92  PALV---SPDSPTQTVGGTFSTEFRAHDHLERMLSLDNVFDLDELQAWIDRVEREVG--- 145

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----S 178
             S  +  E K+DG  + + YE G+ V    RGDG +GEDV+  +R +  +P  L     
Sbjct: 146 -GSTRYLCELKVDGLAVNLVYENGRLVRGLTRGDGRTGEDVTLNVRTVQDVPERLTATDR 204

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN 237
             +P+++EVRGEVY    +F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L 
Sbjct: 205 FPVPDVVEVRGEVYFRVEEFADLNAALVKAGKAPFANPRNAAAGSLRQKDPKVTRSRPLR 264

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
              HGLGK        Q E  + +   G PV+   +  ++   ++ Y       R    Y
Sbjct: 265 LVCHGLGKRVGFEPTRQSESYEALAAWGLPVSPYSKVIDSTEELIEYIRYWNEHRYDAAY 324

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KVD+ SLQ++LG  +R+PRW +++K+  ++A+T LLDI + +GRTG +TP A 
Sbjct: 325 EIDGVVVKVDDVSLQRRLGTTSRAPRWAVAYKYPPEEANTTLLDIRVNVGRTGRVTPYAV 384

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +EPV + G+ ++ ATLHN + +K            + + +GDRV++++AG+VIP+V+  I
Sbjct: 385 MEPVKVAGSTVSMATLHNAEEVKR-----------KGVLIGDRVVIRKAGDVIPEVLGPI 433

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           V+ R    + F  P+ CP C +++         +     RC    +C AQ  ERL H   
Sbjct: 434 VDLRTGTEREFVMPTHCPECGTQL-----AYEKEGDVDIRCPNARSCPAQLRERLFHLAG 488

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R AF+IE LG +      +S      I    D+F L               G    +   
Sbjct: 489 RGAFDIEVLGYEAAGALLRS----GVIADEGDVFDLTEEDLKRVDLFVTKSGQLSANGRR 544

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L D++   ++  L + +  L IRHVG   A++LA+ + S           +A        
Sbjct: 545 LLDNLAAAKDRPLWKVLVGLSIRHVGPTAAQALAREFGSIDAIDAASEERLA-------- 596

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
              V  VG  IA+A+ E++    +   VE   +         + +V   +E   +V TGT
Sbjct: 597 --EVDGVGPTIAKAVREWFAVDWHREVVEKWRRAGVRMEAERDTSVPRNLEGLSIVVTGT 654

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L++  R +A+E +   G   +  +S+KT  ++VGD PGSK +KA QL + +++E+ F  L
Sbjct: 655 LREFSRDEAKEAIMARGGKAAGSVSKKTAFVVVGDAPGSKYDKAVQLKIPVLDEDGFRVL 714

Query: 718 LQQYNTT 724
           L Q    
Sbjct: 715 LDQGPEA 721


>gi|57234606|ref|YP_181338.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195]
 gi|123759715|sp|Q3Z8W1|DNLJ_DEHE1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57225054|gb|AAW40111.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195]
          Length = 677

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/716 (33%), Positives = 367/716 (51%), Gaps = 57/716 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E+ +L +EI+ H+  YY    P I DSEYDAL RR   +  A P+L  +   + P  +
Sbjct: 5   RTEIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTA---DSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G E   +   V H  P LSL   ++  +L  +  R+ +      + +     EPK+DG 
Sbjct: 62  VGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYLRVKKLLG---NAAFQIDCEPKMDGL 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y  GKF   A RGDG  GE+++  +R I +IP     + P + E+RGEVY+ K  
Sbjct: 119 AVALTYRNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVYLPKEG 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQY 255
           F  LN E    G   +ANPRNAA+G LR+L+P+    R L+ F++ LG   + +     +
Sbjct: 179 FAKLNRERADKGLSLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYAEDSLLPDSHW 238

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L+    LGF +N   R  NT      YY EM   R +LPY+ DG+V+KVD  SLQ++L
Sbjct: 239 QILEYFSRLGFKINPRNRLVNTLEEAKEYYREMAENRDSLPYEADGVVFKVDSVSLQQKL 298

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G+  R PRW I++KF  +Q +T L  I I +GRTG L P A LEPVN+GG ++  A+LHN
Sbjct: 299 GDAGREPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLHN 358

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF-- 433
           ED I             +DIR GD V+++RAGEVIP+VV  ++ +R P+++PFS      
Sbjct: 359 EDDI-----------LRKDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETLF 407

Query: 434 --------CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                   CP+C   + R          A H C   ++C AQ   +L+HFVSR   +I G
Sbjct: 408 NPKLSRPACPVCGGEIYRPAGE------AMHYCAN-VSCPAQFERQLEHFVSRGTMDIRG 460

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G+       +       ++  +D++ L             +   G+ S  N+  +I   
Sbjct: 461 IGESLSVILAQE----GLVKNVSDLYYLTAADLL------KLPRMGEKSADNIIKAIADS 510

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++  L+R IF LGIRHVG E A  L+  Y           +I A        L  +P +G
Sbjct: 511 KSRPLDRVIFGLGIRHVGNETAALLSSRYG----------DIWALAGAGLDELQTIPDIG 560

Query: 606 DIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
             IA +I  ++   +NI  +       V  +  +        +   + V TG L  + R 
Sbjct: 561 AKIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSYKPLPLSGVEFVVTGKLDSLSRE 620

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +AQ+ +  LG      +++ T  ++VG + GSKL KA+ +GVK ++E++F+ +L+Q
Sbjct: 621 EAQQKIRSLGGTAKDNVTKATRYLVVGADAGSKLAKARSMGVKELSEQEFINMLEQ 676


>gi|313674932|ref|YP_004052928.1| DNA ligase, nad-dependent [Marivirga tractuosa DSM 4126]
 gi|312941630|gb|ADR20820.1| DNA ligase, NAD-dependent [Marivirga tractuosa DSM 4126]
          Length = 671

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/714 (30%), Positives = 369/714 (51%), Gaps = 49/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A +++  L +++ Y++  YYQ S   I D E+D + +    +   FPDL  S   
Sbjct: 1   MEKKAAEQKIQELSEKLHYYNYKYYQESVSEISDYEFDMMLKELIELEEKFPDLKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++  +   V H IP LSL   ++ E+L  F  R+ R   +    S  +  E
Sbjct: 58  DSPSQRVGGDITKNFETVEHKIPMLSLGNTYSKEELDDFDGRVKRGLGE---ESYEYFCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
            K DG  I++ YE GK +    RGDG  G+D++   + I TIP  +     PE  E RGE
Sbjct: 115 LKFDGVAISLHYENGKLIRGVTRGDGSKGDDITNNAKTIRTIPLKVRGEQFPEYFEARGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           V++ +  F  +N E    G    ANPRNAASG L+  +   +  R L+ F++      ++
Sbjct: 175 VFLPREAFNEINREREENGEALLANPRNAASGTLKMQDSGVVAKRKLDCFLYSYA-GEDL 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E ++++   GF V+   ++    + + ++ NE +  R +LP D DG+V KV+  
Sbjct: 234 PIDSHEEGIKQLEKFGFNVSQTYKKCKNINEVFNFINEWEEKRHSLPVDTDGIVIKVNSL 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  A+SPRW I++K+  + ++T L +I  Q+GRTG +TPVA LEPV++ G  + 
Sbjct: 294 GQQEQLGFTAKSPRWAIAYKYKAESSTTILKEITYQVGRTGAVTPVANLEPVSLAGTTVK 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN + I  L           D+RVGD V V++ GE+IPK+  + + +R   +    
Sbjct: 354 RASLHNANEIARL-----------DLRVGDTVHVEKGGEIIPKITGVDLTKRDLGSNEVE 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           +   CP C + +VR          A H C     C  Q    ++H++ R A +I+ +G++
Sbjct: 403 YIQECPECGTELVRAEGE------AVHYCPNKKGCPPQIKGSIEHYIQRKAADIDSMGER 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   ++       ++  AD++ L+         +  + GF D+S  NL   I + + I 
Sbjct: 457 TIHLLYEK----GLVKNVADLYDLK------YEDVFELEGFKDLSTQNLLKGIEESKQIP 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            E  +F LGIR VG  +A  L  ++ +  N A+            +  LI VP +G+ IA
Sbjct: 507 FENILFGLGIRFVGKTVAEKLGAHFKNIDNLAKA----------SFDELIEVPEIGERIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           Q++VE++ +  NI  +E L         +    +   + +ENK LV +G  +   R + +
Sbjct: 557 QSVVEYFHDEDNIKLIERLKSAGLQFEIQETVIEQKGNVLENKSLVVSGVFEHYGRDEIK 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           E + Q G  V + +S K DI++ G+N G +KL+KA++LGVKI++E +F  L+++
Sbjct: 617 EVIKQYGGKVVSAISGKVDILVAGENMGPAKLQKAEKLGVKIIDEVEFRSLIKE 670


>gi|256826919|ref|YP_003150878.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641]
 gi|256583062|gb|ACU94196.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641]
          Length = 725

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/721 (33%), Positives = 379/721 (52%), Gaps = 55/721 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
             + +L +EI ++   YY    P I D+ +D+L R    +    P+     DP  P  ++
Sbjct: 17  ARIEALRREIEHNSWLYYAQDAPAISDAAFDSLMRELRQLEAEHPEF---YDPTSPTQRV 73

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +      VTH+    SL+   ++++L  ++ R +          +    E KIDG+ 
Sbjct: 74  GGYVGEQFAAVTHAERMYSLDNAMDLDELDAWMDRTFEALGT----DVPLCCELKIDGSG 129

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-------NIPEIIEVRGEV 191
           I + YE G+ + AA RGDG  GEDV+A IR +  +P  L         ++ E +E+RGEV
Sbjct: 130 IAVTYEDGRLMRAATRGDGVVGEDVTANIRTVRDVPLRLRAEALDALTDVEEALELRGEV 189

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN      GR+ +ANPRNAA+G LR+ +PT    R L+ F +     + + 
Sbjct: 190 YMPKKSFNALNAAADREGRQEFANPRNAAAGSLRQKDPTITAQRDLSTFTYATASNAALT 249

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             GQ+E+L+ MR  GF VN  VR  ++   + ++  E    R +LPY+IDG+V KV++FS
Sbjct: 250 LPGQWELLEWMRNAGFHVNPDVRLCHSRDEVRAFCKEALDKRQSLPYEIDGVVVKVNDFS 309

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  AR+PRW I+ KF  ++ +T L DI +Q+GRTG LTPVA LEPV++ G++++ 
Sbjct: 310 LQDRLGFTARAPRWAIAFKFPPEEKTTLLRDITVQVGRTGALTPVAELEPVSVSGSVVSR 369

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED ++            +D+RVGD V+V++AG+VIP+V+  +++ R  DAQP+  
Sbjct: 370 ATLHNEDEVRR-----------KDVRVGDTVIVRKAGDVIPEVLGPVLSLRPADAQPWHA 418

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S VVR+      +  A  RC   L C AQ  ERL H+ SR A +IEG+G++ 
Sbjct: 419 PTSCPSCGSPVVRE------EGGAILRCV-SLDCPAQAHERLIHWASRGALDIEGMGEEV 471

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-----KIENILGFGDVSVTNLYDSINKR 545
           +    +S      +   AD + L      +       K    +  G      +   I++ 
Sbjct: 472 IGRLLESGR----VVDVADYYHLTEYDLATLDMGRVNKDGEAIHLGSTVAAKIVGQIDQS 527

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++    R +F LGIRHVG   A ++A+ Y S +   +   + +A           +  +G
Sbjct: 528 KHRGFARVLFGLGIRHVGKTTAEAIAQAYPSIEALREAKMDDLAA----------IEGIG 577

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTL--QKIQ 662
            IIA+++  F + P+N+  ++ LL                  +     V TG+L    + 
Sbjct: 578 PIIAESLFVFLRTPQNVQVIDRLLAAGVVMEEAALTPRAPQTLSGLTFVLTGSLVQSGMT 637

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A + +  +GA VS  +S KT  +I G+  GSK +KA  LGV +++E  FL +L+   
Sbjct: 638 RTEAGDALKAMGAKVSGSVSGKTSFVIAGEAAGSKRDKAVSLGVPVIDEAAFLHILETGQ 697

Query: 723 T 723
            
Sbjct: 698 A 698


>gi|162448184|ref|YP_001621316.1| DNA ligase [Acholeplasma laidlawii PG-8A]
 gi|190359222|sp|A9NHW0|DNLJ_ACHLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161986291|gb|ABX81940.1| DNA ligase, NAD-dependent [Acholeplasma laidlawii PG-8A]
          Length = 659

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/706 (33%), Positives = 370/706 (52%), Gaps = 49/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +  +  L ++I+  +  Y+   +PII D  YD L R    +   +P+    +D   P 
Sbjct: 2   DIQTRIKELRKQINEANYLYHTKDQPIISDFVYDGLMRELIELETKYPEY---DDETSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            KIGG +  +  K TH++P +SL  I+N E+L+ F  RI +           FT E KID
Sbjct: 59  KKIGGVVLDAFKKHTHTVPMMSLSNIFNKEELKVFYDRIQKVIPNT-----SFTTELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ YEKG F  AA RG+G  GED++  ++ I T+P  LS   P  IEVRGE+Y+S 
Sbjct: 114 GLAVTLIYEKGIFKKAATRGNGVVGEDITENVKTIKTLPLQLSK--PLDIEVRGEIYMSH 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  +N E        + NPRNAA+G +R+L+   +  R L+ F + +   S  F   Q
Sbjct: 172 KTFKEVNLERANSNLDLFVNPRNAAAGTVRQLDSKVVAKRRLDLFTYTVVGASN-FNSTQ 230

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ +  LGFPVN   +  +    +    +    +R TLPYD DG+V KV++F   + 
Sbjct: 231 KETLEFLSELGFPVNPHYKLVDNLDALSDAIDNYDILRKTLPYDTDGVVIKVNQFEHYET 290

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  A+ P++  ++KF  ++  T++ DI  Q+GRTG++TPVA L PV I G+L++ ATLH
Sbjct: 291 IGYTAKYPKYAGAYKFEAEKQITKVEDIIFQVGRTGVITPVAVLTPVFISGSLVSRATLH 350

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NEDYI             +DIR+ D+VLV +AGE+IP+V+++++  R   A PF     C
Sbjct: 351 NEDYI-----------LNKDIRIDDQVLVHKAGEIIPEVIEVVLGSRTNQA-PFEMVKHC 398

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C+S +VR          A + C     C  + +  L HF SR A +I+ LG++ ++  
Sbjct: 399 PACESNLVRKQGE------ADYYCAND-NCPGKNVFGLIHFASRAAMDIDTLGEKVVELL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    ++   DI+ L     T   ++E + GFG   V  L ++I   +  +L+R I
Sbjct: 452 HDQT----YLQTIPDIYKL----HTFKDQLEELPGFGKKKVEKLLNAIEASKMQTLDRLI 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGI++VGA++A++L  +Y S    A             +  LI++P +G  IA ++  
Sbjct: 504 FGLGIKNVGAKVAKTLLNHYPSITLLADA----------KYEDLIQIPDIGPEIADSVTT 553

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++ N  N   +E L         + +   +     K  V TGTL    R +A + + +LG
Sbjct: 554 YFSNESNQHMLEELKNLGLQMTYKIDVVTTHPFNGKTFVVTGTLDDFSRTEASDIIEKLG 613

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             VS  +S+KTD ++ G   GSKL KA +LG+++M+E  F   + +
Sbjct: 614 GKVSGSVSKKTDYVLAGKEAGSKLTKALELGIEVMDEATFKVKINE 659


>gi|220915846|ref|YP_002491150.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254781252|sp|B8JD56|DNLJ_ANAD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219953700|gb|ACL64084.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 687

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/723 (32%), Positives = 365/723 (50%), Gaps = 50/723 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A      L   I   D  YY   +P++ D+EYD L     A+    P+L  +   
Sbjct: 1   MKKADASARARELRDRIRAADHAYYVLDQPLLADAEYDRLMHELQALEAEHPELVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  +    +V H  P LSL  + + ++L +F  R+ R     D   + + +E
Sbjct: 58  DSPTQRVSGAPSERFERVVHREPMLSLGNVQSDDELHEFDARVRRLLGLPDGEPVGYVVE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI------PTIPRVLSLNIPEII 185
           PK+DG  + + Y  G F   + RGDG +GEDV+A +R +        +P  L    P  +
Sbjct: 118 PKLDGLAVELVYRDGAFTSGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGRPPPRV 177

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLG 244
           EVRGEV + K  F A+N +++  G +P+ANPRNAA+G LR+L+      R L+F  +   
Sbjct: 178 EVRGEVLLFKEHFEAMNRQLVRAGEEPFANPRNAAAGTLRQLDWRVTARRPLSFIAYEAL 237

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  +  +E L+++   GF  N   R+      +++Y + M   R  LPYD DG+V 
Sbjct: 238 LPGGDPWRTHWEKLEELAAWGFETNAENRRCRGLAEVLAYRDRMAERRFELPYDTDGIVV 297

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+   +++LG  ++ PRW ++ K+  ++ +TR+  I   +GRTG+LTPV   +PV + 
Sbjct: 298 KVDDLDWRRRLGAASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLS 357

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           GA++  ATLHNED ++            +DI  GD VLV+RAGEVIP+VV  +   R   
Sbjct: 358 GAMVARATLHNEDEMRR-----------KDILEGDWVLVRRAGEVIPEVVKPLPERRTGA 406

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            QPF FP+ CP+C +RVVR+   K       +RCTG  AC AQ + RL HF  R A +IE
Sbjct: 407 EQPFRFPAECPVCGARVVREEGEK------VYRCTGA-ACPAQLVGRLCHFAQRRALDIE 459

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR---QQTSTTKIENILGF----GDVSVTN 537
           GLG++      +       ++  AD++ +      Q  S  + E   G      + S  N
Sbjct: 460 GLGEKLAAGLVERGQ----VKDFADLYAVPFEVWQQLFSRPRKEQDAGAARELPEKSAQN 515

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           +  ++ + R  +L RF+F+LGI  VG   A +LA+++                   D  +
Sbjct: 516 MVAALERSRKTTLRRFLFALGIPQVGEATAATLARHFGDLARVMDA----------DEEA 565

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           L  V  VG   A  I  + Q P+N   VE L      +              K +V TG 
Sbjct: 566 LKGVRDVGPETAAEIRAWTQEPQNRRVVERL-LAAGVTPEAEVVEARGPFAGKTVVLTGG 624

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R  A+  + + G  VS  +SRKT +++ G++ GSKLEKA+ LGV+I  EE+F+ L
Sbjct: 625 LSTMSRDDAKAEIERRGGKVSGSVSRKTYLVVAGEDAGSKLEKARSLGVRIAGEEEFVRL 684

Query: 718 LQQ 720
           L++
Sbjct: 685 LKE 687


>gi|328885211|emb|CCA58450.1| DNA ligase [Streptomyces venezuelae ATCC 10712]
          Length = 726

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/742 (29%), Positives = 356/742 (47%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR++ + L ++I  H   YY   +P+I D E+D L R  +A+   +P+L     P+ 
Sbjct: 9   PAEAREKHAELAEQIEEHRFRYYVKDQPVISDGEFDKLLRALEALEEEYPEL---RTPDS 65

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G+       V H    LSL+  ++ E+L  +  R+ R     D     +  E K
Sbjct: 66  PTQKVAGQYETDFTSVEHRERMLSLDNAFDDEELTTWADRVARDVGTPD---FHYLCELK 122

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L  + +P+++E+RGEVY
Sbjct: 123 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIADIPERLRGDRVPDLVEIRGEVY 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    +R L+  VHG+G       
Sbjct: 183 FPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIGAREGFDI 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               +  + +   G P     +   +   +  +       R ++ ++IDG+V K+DE  L
Sbjct: 243 SRLSDTYELLHEWGLPTAKHNKVVGSLGEVREFIAYFGENRHSVEHEIDGVVVKLDEIPL 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 303 QGRLGSTARAPRWAIAWKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN++ +K            + + +GD V++++AG+VIP+++  + + R    + F  P
Sbjct: 363 TLHNQEVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC     C AQ  ERL     R   +IE  G    
Sbjct: 412 AECPECGTPL-----KAMKEGDIDLRCPNARTCPAQLRERLFFLAGRQCLDIENFGAVAA 466

Query: 492 DFFFKSEDPAF-SIRIPADIFTLQRRQQ--------------------TSTTK----IEN 526
               +  +PA   +    D+F L   Q                     T   K      N
Sbjct: 467 AALTRPLEPAEPPLVDEGDLFDLTIEQLLPIKAYVLDPDSGLPRRDPKTGEEKIVTVFAN 526

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + ++I   +   L RFI  L IRHVG   A +LA+ + S +   Q    
Sbjct: 527 QKGEPKKNALAMLENIAAAKTRPLARFINGLSIRHVGPVAAEALAREFRSLERIEQASEE 586

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVS 644
            +A           V  VG IIA A+ +++    +   V             G  E    
Sbjct: 587 ELAA----------VDGVGGIIAAAVKQWFSEEWHREIVRKWRAAGVSLEDEGAGEDVGP 636

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL+   R  A+E +  LGA V+  +S+KT  ++VG+NPGSK +KA QL
Sbjct: 637 RPLEGLTVVVTGTLENFTRDGAKESLQSLGAKVTGSVSKKTSFVVVGENPGSKYDKAMQL 696

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
            V +++E+ F  LL+Q     R
Sbjct: 697 KVPVLDEDGFKVLLEQGPEAAR 718


>gi|332880187|ref|ZP_08447868.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681836|gb|EGJ54752.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 670

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/710 (30%), Positives = 358/710 (50%), Gaps = 50/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++++  L  E+  H+  YY  + P I D E+D + R    +  A P+    +DP+ P 
Sbjct: 4   EVKEQIERLRNELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEF---DDPDSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N    +V H  P LSL   +N +++  F  R+       +        E K D
Sbjct: 61  RRVGSDLNQEFVQVPHRYPMLSLSNTYNKQEVADFYERVRSGL---EGEPFEICCEMKYD 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  I++ YE+G+ V A  RGDG  G+DV+  ++ I  IP  L+ N  PE  E+RGE+ + 
Sbjct: 118 GLSISLTYEQGRLVRAVTRGDGVQGDDVTENVKTIRCIPLRLNGNGYPEEFEIRGEILMP 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  LN E        +ANPRNAASG L+  N   +  R L+ +++ L     I   G
Sbjct: 178 WTSFETLNREREEREEPLFANPRNAASGTLKSKNSAVVAQRKLDAYLYYL-LGEHIPFDG 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ  R  GF ++ G+++  T   I  + +     R  LP   DG+V KV+    Q+
Sbjct: 237 HYENLQAARSWGFKISGGMKKVTTLQDIYDFIDYWDVERKNLPVATDGIVLKVNSQRQQR 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA ++PV + G ++  ATL
Sbjct: 297 ALGYTAKSPRWAIAYKFQAERARTRLNAVTFQVGRTGTVTPVANMDPVQLAGTVVRRATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF-SFPS 432
           HN D ++ L           D+ +GD V V++ GE+IPK+V +  + R P+  P   F +
Sbjct: 357 HNADVMEQL-----------DLHIGDMVYVEKGGEIIPKIVGVDADARGPETGPRAEFIT 405

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +VR          AA  C    AC  Q   R++H++SR A NI+ LG + +D
Sbjct: 406 RCPECGAELVRYEGE------AAWYCPNDTACPPQIKGRIEHYISRRAMNIDSLGPETVD 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            +++       IR  AD++ +Q +Q           G  + S   +  SI     +  ER
Sbjct: 460 DYYRR----GLIRDVADLYDIQVQQINGED------GTREKSAQKIVRSIADSVEVPFER 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGIR VG   A++LA+++ S            A  +     ++++  +G +IA+++
Sbjct: 510 VVFALGIRFVGEIAAKALARHFKSMD----------ALASASLEDMLQINGIGVVIAESV 559

Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + ++ N  N   V  L ++            + S ++  + +V +G      R + +  +
Sbjct: 560 IRYFANEANRDLVRRLREKGVRMELSDEELSSHSDKLSGQSIVVSGVFSLHSRDEYKAMI 619

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            Q G      +S KT  ++ G N G +KLEKA +LG+ I++EE+FL  ++
Sbjct: 620 EQHGGKNVGSISSKTSFVLAGANMGPAKLEKAGKLGIPILSEEEFLKKIE 669


>gi|197121145|ref|YP_002133096.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K]
 gi|254781542|sp|B4UDH6|DNLJ_ANASK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|196170994|gb|ACG71967.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K]
          Length = 687

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/723 (32%), Positives = 367/723 (50%), Gaps = 50/723 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A      L   I   D  YY   +P++ D+EYD L     A+    P+L  +   
Sbjct: 1   MKKADAPARARELRDRIRAADHAYYVLDQPLLADAEYDRLMHELQALEADHPELVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  +    +V H  P LSL  + + ++L++F  R+ R     D   + + +E
Sbjct: 58  DSPTQRVSGAPSERFERVVHREPMLSLGNVQSDDELQEFDARVRRLLGLPDGEPVGYVVE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI------PTIPRVLSLNIPEII 185
           PK+DG  + + Y  G F   + RGDG +GEDV+A +R +        +P  L    P  +
Sbjct: 118 PKLDGLAVELVYRDGAFTSGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGRPPPRV 177

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLG 244
           EVRGEV + K  F A+N +++  G  P+ANPRNAA+G LR+L+      R L+F  +   
Sbjct: 178 EVRGEVLLFKEHFEAMNRQLVRAGEAPFANPRNAAAGTLRQLDWRVTARRPLSFIAYEAL 237

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              +   +  +E L+++   GF  N   R+      +++Y + M   R  LPYD DG+V 
Sbjct: 238 LPGDDPWRTHWEKLEELAAWGFETNAENRRCRGLAEVLAYRDRMAERRFELPYDTDGIVV 297

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+   +++LG  ++ PRW ++ K+  ++ +TR+  I   +GRTG+LTPV   +PV + 
Sbjct: 298 KVDDLDWRRRLGAASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLS 357

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           GA++  ATLHNED ++            +DI  GD VLV+RAGEVIP+VV  +   R   
Sbjct: 358 GAMVARATLHNEDEMRR-----------KDILEGDWVLVRRAGEVIPEVVKPLPERRTGA 406

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            QPF FP+ CP+C +RVVR+   K       +RCTG  AC AQ + RL HF  R A +IE
Sbjct: 407 EQPFRFPAECPVCGARVVREEGEK------VYRCTGA-ACPAQLVGRLCHFAQRRALDIE 459

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR---QQTSTTKIENILGF----GDVSVTN 537
           GLG++      +       ++  AD++ +      Q  S  + E   G      + S  N
Sbjct: 460 GLGEKLAAGLVERGQ----VKDFADLYAVPFEVWQQLFSRPRKEQDAGAARELPEKSAQN 515

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           +  ++ + R  +L RF+F+LGI  VG   A +LA+++                   D  +
Sbjct: 516 MVAALERSRKTTLRRFLFALGIPQVGEATAATLARHFGGLARVMDA----------DEEA 565

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           L  V  VG   A  I  + Q P+N   VE L      +              K +V TG 
Sbjct: 566 LKGVRDVGPETAAEIRAWTQEPQNRRVVERL-LAAGVTPEAEVVEARGPFAGKTVVLTGG 624

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R  A+  + + G  VS  +SRKTD+++ G++ GSKLEKA+ LGV+I  EE+F+ L
Sbjct: 625 LSTMSRDDAKAEIERRGGRVSGSVSRKTDLVVAGEDAGSKLEKARSLGVRIAGEEEFVRL 684

Query: 718 LQQ 720
           L++
Sbjct: 685 LKE 687


>gi|160902460|ref|YP_001568041.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95]
 gi|190359269|sp|A9BJX5|DNLJ_PETMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160360104|gb|ABX31718.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95]
          Length = 668

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/704 (32%), Positives = 377/704 (53%), Gaps = 45/704 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            +  ++    L+ EI  H+  YY  + PII D EYD L +    +   +P+L   + P+ 
Sbjct: 4   PKNIKERYEKLKAEIEEHNYRYYVLADPIISDQEYDKLFKELVELEKKYPEL---KTPDS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  +IGG +     KV H IP LSL+  +N E++  F  R+ +       N + +  E K
Sbjct: 61  PTQRIGGIVVEGFNKVNHLIPMLSLDNTYNEEEILDFHKRVLKNLSL---NHVEYFCELK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + +RY  G    A  RGDG +GED++  ++ IP+IP  L  N+   IEVRGE+Y+
Sbjct: 118 IDGVSVALRYTDGVLTQAITRGDGTTGEDITQNVKTIPSIPLRLRENL--TIEVRGEIYM 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K +F+ +N E    G   +ANPRNA +G L+ L+ T++  R L+ F++ +        +
Sbjct: 176 PKKEFVRINSEREEKGLPVFANPRNATAGTLKLLDSTEVAKRKLSSFMYYVIFPQNYNLE 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E +  ++ +GF +N   + A     ++ ++ E    R  L Y++DG+V KV+ F LQ
Sbjct: 236 TQEEAINFLKEVGFRINPNYKNAQDIGQVIEFWKEWNRRRKELEYEVDGIVVKVNSFELQ 295

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LGE ARSPRW I+ KF  +Q  T+L  I +Q+G TGI+TPVA  +P+ + G ++  A+
Sbjct: 296 RLLGETARSPRWAIAFKFEAEQKETKLKAIKLQVGSTGIITPVAEFDPIQLEGTIVKRAS 355

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DY+K            RDIR GD VL+++AG +IP+V+  +  +R  + +    P 
Sbjct: 356 LHNFDYLK-----------ERDIREGDYVLIEKAGGIIPQVIGPVKEKRTGEEKIIRPPE 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +V +  + +      A RC    +C  + L  L++FVSR+A NI+GLG + L 
Sbjct: 405 KCPVCGGKVGKIKSSE-----VAIRCLNP-SCPEKLLRTLENFVSRNAMNIQGLGPKILK 458

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                   A  ++  AD++ L  ++  S        G GD +V N+   I + +N  L+R
Sbjct: 459 RMVD----AGLLKDIADLYYLNEQKIRSLG-----EGIGDKTVENILTQIEQSKNRELDR 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I +LGI +VG++ A+ LA ++ +  +               +  L+ +  +G+ IA AI
Sbjct: 510 LINALGIPNVGSKTAKDLANHFKNLDSLIDA----------KFDELVEIEGIGEDIANAI 559

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++F+        V+ L         + E+ +   ++   +  TG L K+ R +  EYV  
Sbjct: 560 IKFFSQEEVKKIVKKLKDAGVNMGKKEEEKLEGPLKGLVICQTGALSKMTRQEFAEYVES 619

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            G   S  +++KT+I++VG+NPGSKL+KAQ  G+ IM+EE+F  
Sbjct: 620 KGGTFSENVTKKTNILVVGENPGSKLDKAQSYGITIMSEEEFFD 663


>gi|325962711|ref|YP_004240617.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468798|gb|ADX72483.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3]
          Length = 767

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/758 (29%), Positives = 366/758 (48%), Gaps = 63/758 (8%)

Query: 2   KKRQLIPIEALSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
             R   P+E  S+  E  R+E  +L   +  +   YYQ   P++ D+E+D L RR + I 
Sbjct: 12  ATRTTEPVEPESVPSESVREEYENLVDLVRKYRFAYYQEDAPLVSDAEFDELFRRLEEIE 71

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
              P+L  +   + P  ++GGE++ +   V H     SLE ++++E+L  ++T+      
Sbjct: 72  ALHPELVSN---DSPTQEVGGEVSAAFAAVEHLQRMYSLEDVFSLEELEAWLTKASASIG 128

Query: 120 KKDDN--SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
           K  +   +  +  E KIDG  + + Y  GK V AA RGDG +GED++  +  I  IPR L
Sbjct: 129 KLGNGTPAAAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIQEIPREL 188

Query: 178 -SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
                P  +EVRGEV+I   +F   N+ +I  G+ P ANPRNAA+G LR+ +P +   R 
Sbjct: 189 RGEGFPAEMEVRGEVFIPSKEFAEFNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRP 248

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L  FVHG+G    + A  Q E    ++  G PV+       +   ++ +       R  L
Sbjct: 249 LKMFVHGIGARDGLPAGSQSESYALLKQWGLPVSPYSEVLGSLDEVLEFIKRYGDKRHKL 308

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            ++IDG+V KVD+F+ Q+ LG   R PRW +++K+  ++  T+LLDI + +GRTG +TP 
Sbjct: 309 LHEIDGIVIKVDDFATQRALGYTTRVPRWAVAYKYPPEEVHTKLLDIQVNVGRTGRVTPF 368

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
             +EPV + G+ +  ATLHN+D +K            + +++GD V++++AG+VIP++V 
Sbjct: 369 GLMEPVKVAGSTVEMATLHNQDVVKA-----------KGVKIGDIVILRKAGDVIPEIVG 417

Query: 416 IIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
            ++  R     P   F  P+ CP C + +         +     RC    +C +Q  ER+
Sbjct: 418 PVLALRDQQDPPVRDFVMPTECPSCGTPL-----APAKEGDVDIRCPNAKSCPSQLRERV 472

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKS-EDPAFSIRIPADIFTLQRRQQTS----------- 520
            H   R AF+IE LG +      +  E     +   A +F L                  
Sbjct: 473 FHLAGRGAFDIEALGWEAAIALTQPAEPEVPPLTSEAALFDLTPEDLAGVRIRREKRSKG 532

Query: 521 --TTKIENILGFGDV-----------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
             T + E +  F              +   L+  ++K +   L R + +L IRHVG   +
Sbjct: 533 VPTGEYELVPYFYSKGTAKSPSRPTATTEKLFKELDKAKTQPLWRVLVALSIRHVGPRAS 592

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           R+LA  + S     Q     +AH          V  VG  IA A+ E++    +   V+ 
Sbjct: 593 RALATAFGSMDAIRQASEEELAH----------VDGVGPTIAAALKEWFAEDWHREIVDR 642

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
                       ++++   +E   +V TG+L    R +A+E +   G   +  +S+ T  
Sbjct: 643 WAAAGVRMKDERDESMPRTLEGLTVVVTGSLPNFSRDEAKEAILVRGGKAAGSVSKNTSY 702

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           ++ G++ G+KL+KA+QLG+ +++E+ F  LL      L
Sbjct: 703 LVAGESAGTKLDKAEQLGIPVLDEDGFRQLLAGGPAAL 740


>gi|254427631|ref|ZP_05041338.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
 gi|196193800|gb|EDX88759.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
          Length = 776

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/804 (30%), Positives = 384/804 (47%), Gaps = 125/804 (15%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +      ++   L  +++     YY    P + D+EYD   R    +   +PDL  +   
Sbjct: 1   MPNPDIIQKAQHLRDQLNDWSYRYYVQDDPAVPDAEYDRAFRELKDLEAQYPDLITA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G     +  +V H +P LSL+  ++ +DLR F  RI        D ++ +  E
Sbjct: 58  DSPTQRVGDVPLDAFEQVQHEVPMLSLDNAFDDDDLRAFDKRIRERLG--VDETVDYVAE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  I++ Y  G+ V AA RGDG +GE+++   R I ++P  L  + +P  +EVRGE
Sbjct: 116 PKLDGLAISLLYLDGQLVRAATRGDGQTGENITVNARTIRSVPLTLRGSQVPSRLEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V +    F ALN    A  +K +ANPRNAA+G LR+L+     +R L F+ + + +   +
Sbjct: 176 VVMPHAGFAALNARQEAAEQKVFANPRNAAAGSLRQLDSRITASRPLEFYAYSMAQLEGV 235

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  +ML+ +R  G  VN  VR       ++++Y  +   R  L YDIDG+VYKVD 
Sbjct: 236 PEPATHADMLEALRSWGLRVNPEVRVCAGVDALLAFYQGILEKRDHLDYDIDGVVYKVDR 295

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  Q+ LG  +R+PRW I+HKF  ++  T L  +D Q+GRTG LTPVARLEPV++GG ++
Sbjct: 296 FDWQQDLGFVSRAPRWAIAHKFPAQEELTVLNGVDWQVGRTGALTPVARLEPVHVGGVIV 355

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L           DIR+GD V+V RAG+VIPKVV  +   R  DA+  
Sbjct: 356 SNATLHNIDEIQRL-----------DIRIGDTVVVYRAGDVIPKVVRALPERRPADARDI 404

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P  CP+C S ++R      G      RCTGGL C AQQ E +KHF SR A +I+GLG 
Sbjct: 405 ALPPSCPVCGSDILR------GDDQVVARCTGGLICGAQQREAIKHFASRRAMDIDGLGD 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D     E     I   AD++ L+  Q     ++      G+ S  NL  ++   + +
Sbjct: 459 KLVDALVDQE----LIATVADLYRLKAEQVAGLERM------GEKSADNLIAALETSKTV 508

Query: 549 SLERFIFSLGI--------------------------------RHVGAEIARSLAKYYLS 576
            L RF+F+LGI                                  VG E+A+++  ++  
Sbjct: 509 GLGRFLFALGILQIGEETAKNLADCFGDLEGIRRAPLLLLLAVPDVGMEVAKAIGAFFAE 568

Query: 577 YQNFAQEINNIIAHNNDDWLSLI-----------------------RVPLVGDIIAQAIV 613
             N    I+ ++A   +   S +                        +  +GD   + + 
Sbjct: 569 ADN-EVVIDGLLAEGVNPQASGVPSAAFVNSLTLAQLLKSAKRLGMNLEGIGDKSLETLG 627

Query: 614 EFYQ---------------------------------NPRNICAVEALLKEVSPSIGRHE 640
             ++                                        ++    +V+    R  
Sbjct: 628 GHFRTVAELSAAAAEGAGAEPKGVRSGVMTQLARALAENGWQARLQDAEDQVAALAARAP 687

Query: 641 KNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
               S  +E +  V TGTL+++ R +A++ + QLGA V+  +S+ T  ++ G + GSKL 
Sbjct: 688 VQAESRPLEGQTWVLTGTLEQLTRDQAKQALQQLGAKVAGSVSKNTSTVVAGASAGSKLA 747

Query: 700 KAQQLGVKIMNEEQFLFLLQQYNT 723
           KA+ LGV++ +E   L +L Q+  
Sbjct: 748 KAESLGVEVCDEAALLSMLTQHGI 771


>gi|319779225|ref|YP_004130138.1| DNA ligase [Taylorella equigenitalis MCE9]
 gi|317109249|gb|ADU91995.1| DNA ligase [Taylorella equigenitalis MCE9]
          Length = 681

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/710 (36%), Positives = 387/710 (54%), Gaps = 48/710 (6%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
             +L+  IS HD  YY    P I D EYD L R+      A P+   S   + P  ++GG
Sbjct: 9   YEALKSLISVHDKAYYIDDNPQISDEEYDGLMRKLLDYEQAHPEWVTS---DSPSQRVGG 65

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
                   V H++P LSL  ++N E+L  F  R+       D     F  EPK DG  I+
Sbjct: 66  VALKIFNSVRHAVPMLSLGNVFNPEELTAFYNRMVEAVGSDD---FEFNCEPKFDGLAIS 122

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKN 196
           IRYE G    A+ RGDG +GEDV+A +  I T+P  L       +P+IIEVRGE  + ++
Sbjct: 123 IRYENGVLKTASTRGDGLTGEDVTAQVSTIRTVPLKLNVPSKEALPKIIEVRGEALMLRS 182

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK---TSEIFAK 252
           DF  L       G + +ANPRNAA+G LR+L+P     R L F+ +GLG+         K
Sbjct: 183 DFDNLVKRQEEEGLQTFANPRNAAAGSLRQLDPKITAKRKLRFYAYGLGEFKSLGSEEPK 242

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q ++L  +  LGF V           G+++++  +K+ R TLP+DIDG+VYKVD F LQ
Sbjct: 243 SQSQLLDYLSELGFAVTEYRSVKKGLDGLLNFFEHIKAKRDTLPFDIDGVVYKVDSFELQ 302

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G  +++PR+ I+HKFA +Q  T+LLDI++Q+GRTG LTPVARLEPV +GG  +  AT
Sbjct: 303 QKIGFVSKAPRFAIAHKFAAEQMQTKLLDIEVQVGRTGALTPVARLEPVFVGGVTVRKAT 362

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I+            +++ +GD V+V+RAG+VIP+V++ +++ R  DA  F  P+
Sbjct: 363 LHNEDEIER-----------KNLMIGDTVIVRRAGDVIPEVLESVIDLRPEDAVKFVMPT 411

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S V +          A  RCTGGL C AQ  + + H VSR A NIEGLG + + 
Sbjct: 412 ICPVCGSAVEKPEGE------AVARCTGGLVCGAQITQGIIHAVSRKALNIEGLGDKHIQ 465

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               +E     I+   D+F L         +        +V    L+  I   ++ +L R
Sbjct: 466 KLVSTEK----IKRLDDLFKLTVDDLNILGRNAE-DSKLEVLAPTLHARIQASKSTTLSR 520

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+F+LGIRHVG   AR LAKY+    +  Q               L+ VP VG+++A +I
Sbjct: 521 FLFALGIRHVGETTARDLAKYFGDLYSIMQA----------STEELVSVPNVGEVMATSI 570

Query: 613 VEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F+  P N   +  LL+     +       ++  I     V TGTL+  +R +  + + 
Sbjct: 571 HTFFNEPHNREVISNLLELGFVLNAEEEAIQINPAIAGHSFVVTGTLENWKRDEISQVII 630

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
             G  +++ +S+KTD +++G  PG SK++KAQ++G KI++E +F+ +L+Q
Sbjct: 631 SSGGRINSSVSKKTDYLLMGAEPGDSKVKKAQEVGTKILSEAEFIQMLEQ 680


>gi|294506892|ref|YP_003570950.1| NAD-dependent DNA ligase [Salinibacter ruber M8]
 gi|294343220|emb|CBH23998.1| NAD-dependent DNA ligase [Salinibacter ruber M8]
          Length = 691

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/703 (31%), Positives = 375/703 (53%), Gaps = 49/703 (6%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + +H+  YY    P++ D+EYD L ++   +   +P L   + P+ P +++GG +   L 
Sbjct: 32  LRHHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPGL---QTPDSPTHQVGGPVRDELG 88

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            VTH  P LSL+ ++  +++R F     +   +    ++ +T EPK DG  + + YE G+
Sbjct: 89  TVTHPAPMLSLKAVYEEDEVRNFAETCRKELGR---ETVTYTAEPKFDGLAVELIYEDGR 145

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVYISKNDFLALNDE 204
            V  A RGDG +GE+++A ++ I  +P  L  +   +P+ + VRGE Y+ K++F A N  
Sbjct: 146 LVQGATRGDGETGEEITANVKTIKGVPLRLRDDARPVPDRLVVRGEAYMRKDEFNAFNRR 205

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
               G+K +ANPRNAA+G LR+L+     R  L  + + +            E+L+ +  
Sbjct: 206 REEEGKKVFANPRNAAAGSLRQLDSNITARRPLRIYFYEIAPVDGRDFATHAEVLEALPE 265

Query: 264 LGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
            G  V    +R+ +     ++++  +   R  LPY+IDGLV KV++F   + LG R R P
Sbjct: 266 WGLRVCEDHIRRCDGIDAALAHHAALVDRRDDLPYEIDGLVIKVNDFDGHETLGVRDRDP 325

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW  ++KF  ++A+T + D+ +Q+GRTG +TPVA L PV +GG  +T A+LHN++ I   
Sbjct: 326 RWAAAYKFPPRRATTSIEDLFVQVGRTGRITPVAVLAPVEVGGVEVTRASLHNQNEIDR- 384

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     +DIR+GD VL++RAG+VIP+VV +I +ER     P+  P  CP+C S VV
Sbjct: 385 ----------KDIRIGDTVLIERAGDVIPQVVKVIEDERDGTEAPYHIPDACPVCGSEVV 434

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
              + K         CTGG+ C AQ  ERLKH+ SR+A +IEGLG ++ +        A 
Sbjct: 435 LSDDKKQA------FCTGGMTCPAQFRERLKHYASREATDIEGLGDKRAEQLID----AG 484

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            I+  +D++ L++       +        D S  NL D I       L+RF+++LGI  V
Sbjct: 485 LIQTISDLYELEKADLLQLERYA------DKSAQNLIDEIEASLEQDLDRFLYALGIPLV 538

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G+  AR LA+++ +            A  + D  +L  +  +G  +A +I  F+ +  N 
Sbjct: 539 GSATARLLAQHFDTLD----------ALVDADEDALTTIDDIGPEVAHSIATFFADDANR 588

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++  +++   ++       ++ +     VFTG+L+   R   Q +V Q GA  ++ +S
Sbjct: 589 GVIDE-MRDAGLTLTNPYAEDAAPLAGLTFVFTGSLEDWTRSAVQRFVEQHGANATSSVS 647

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             TD ++ G   GSK + A+ LGV +++E+ F  LL++ +  +
Sbjct: 648 GNTDYVVAGPGAGSKRDDAEALGVPVLDEDDFHALLRERDIEM 690


>gi|323467080|gb|ADX70767.1| DNA ligase [Lactobacillus helveticus H10]
          Length = 689

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/720 (30%), Positives = 374/720 (51%), Gaps = 53/720 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q + +  +++++A+KE +SL  ++    D YY    P + D+ YD    R   +  AFP+
Sbjct: 18  QEVKMAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPE 77

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           +     P+    ++GGE++    KV H IP LS+  +++ ++L++F  R+ +       +
Sbjct: 78  IV---TPDSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRMQKLVG----H 130

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + + +E KIDG  +++ Y+ GK V A+ RG+G+ GEDV+A  R I  IP+VL    P  
Sbjct: 131 PVEYNVELKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPE--PLT 188

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           IEVRGE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++  
Sbjct: 189 IEVRGECYMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTW 248

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     Q++ +++M  LGF  N   R+      +  + +E  + R++L Y IDG+V
Sbjct: 249 VNPP-REITSQHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGIV 307

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD+ SL++QLG   + PRW I++KF  ++  T + DI   +GRTG++TP A + PV +
Sbjct: 308 LKVDDLSLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMYPVQL 367

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  A+LHN DY+             + +R+GD V + +AG++IP++ ++++++R  
Sbjct: 368 AGTTVARASLHNPDYLN-----------EKGVRIGDTVKLHKAGDIIPEISEVVLSKRPA 416

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+ P+  P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI
Sbjct: 417 DSVPYEIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMNI 469

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GLG + +      +     +   AD++ L             +  F + S+ NL  +I+
Sbjct: 470 AGLGPKIVKQLIAKD----LVHNVADLYHLTEDDLA------QLDHFKEKSINNLLTAID 519

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  S+E  I  LGI HVGA+ AR +A+ + + +         IA           +  
Sbjct: 520 NSKKNSVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSLGVQDIA----------SIDT 569

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQ 659
           +G   A+++  ++  P     +E L +             E+   +  ++K +V TG L+
Sbjct: 570 IGMATAESMTTYFAQPEAQKLIEELRESGLNMDYLGADEQEEAPDNPFKDKTVVLTGKLE 629

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +  + +  LGA V+  +S KTD +I G + GSK  KA+QLGV ++ EE+ +  ++
Sbjct: 630 HYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEAIAQIE 689


>gi|258648381|ref|ZP_05735850.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259]
 gi|260851551|gb|EEX71420.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259]
          Length = 677

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/712 (31%), Positives = 361/712 (50%), Gaps = 49/712 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L +E+  H+  YY  + P ILD+++DAL +    +    P+ A   D N P  +
Sbjct: 8   KDRIDFLRKELHRHNYNYYVKNNPEILDADFDALMQELADLEQKHPEWA---DNNSPTVR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G +++    +V H  P LSL   ++  ++++F  RI    +    ++     E K DG 
Sbjct: 65  VGSDLSNDFVQVRHQYPMLSLGNTYDKAEIKEFYDRITGDLK---GSAFEICCELKFDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEVYISK 195
            I++ YE G+ + A  RGDG  G+DV+  I+ I +IP  L   L  P   EVRGEV +  
Sbjct: 122 SISLLYEDGRLIRAVTRGDGSVGDDVTENIKTIKSIPLQLQEGLGWPRRFEVRGEVLMPW 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E    G   +ANPRNAASG L+  N   +  R L+ +++ +    +I  K  
Sbjct: 182 ASFEKLNTERETNGEPLFANPRNAASGTLKSKNSAVVASRRLDAYLYYV-LGEDIPKKSH 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE L  ++  GF V+  +  + +   I +Y +   + R  LP   DG+V KVD  + Q+Q
Sbjct: 241 YENLLMIKKWGFKVSENIHLSKSLDNIYAYIDHWDTERRYLPVATDGIVLKVDNLNQQQQ 300

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A T LLD+  Q+GRTG +TPVA ++PV + G  +  A+LH
Sbjct: 301 LGSTAKSPRWAIAYKFKAERARTHLLDVIYQVGRTGAVTPVAVMDPVLLAGTTVKRASLH 360

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSF 433
           NED I+ L           D+   D V V++AGE+IP++V +  + R+        F + 
Sbjct: 361 NEDIIQQL-----------DLHYNDFVFVEKAGEIIPQIVGVDKDARNESLGDKVHFITQ 409

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + ++R  N       AA  C     C  Q   R++HF+SRDA +I  LG + +D 
Sbjct: 410 CPECGTHLIRFPNE------AATYCPNDATCPPQIKGRIEHFISRDAMDINSLGPETIDN 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           +++       I   AD++ L+      +            S   + + I K ++   +R 
Sbjct: 464 YYER----GLIHDIADLYKLRIEDLAGSD------ATRLKSARKIIEGIEKSKSTPFDRV 513

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG  +A++LA Y+ S                     L++V  VG  IA+ + 
Sbjct: 514 LYALGIRFVGKVVAKTLAAYFHSMDALQAAT----------LEELLQVEGVGQTIAENVR 563

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +++ +P N+  ++ L            + VS+ +  K +V +GT  +  R + +  + + 
Sbjct: 564 QWFMSPTNLQILDRLTVAGLQMTADVSRQVSNRLAGKSIVISGTFTRHSREEYKAIIEEN 623

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           G      +S+KTD I+ GDN G SK  KA+ LG+ ++ EE FL +L + +TT
Sbjct: 624 GGKNVGSISKKTDFILAGDNMGPSKRTKAEALGIPLLQEEAFLAMLDEESTT 675


>gi|183981708|ref|YP_001849999.1| NAD-dependent DNA ligase LigA [Mycobacterium marinum M]
 gi|254781377|sp|B2HIF0|DNLJ_MYCMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183175034|gb|ACC40144.1| DNA ligase [NAD dependent] LigA [Mycobacterium marinum M]
          Length = 687

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/719 (30%), Positives = 352/719 (48%), Gaps = 44/719 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E  R+    L +++  H   YY    P+I D+E+D L RR +A+   +P+L     P
Sbjct: 1   MTPEVLRQ-WQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPEL---RTP 56

Query: 72  NGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P   +GG         V H    LSL+  +N E+L  +  RI+        +S  +  
Sbjct: 57  DSPTQLVGGAGFATEFEPVEHLERMLSLDNAFNTEELTAWAGRIHADVG----DSAAYLC 112

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIE 186
           E KIDG  +++ YE G+   A+ RGDG +GEDV+   R I  +P  LS +     PE++E
Sbjct: 113 ELKIDGVALSLVYEGGRLTRASTRGDGRTGEDVTLNARTIEDVPERLSHSEDHRMPEVLE 172

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           VRGEV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ +P    R  L    HGLG 
Sbjct: 173 VRGEVFFRVADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGH 232

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           T        ++    ++  G PV+          G+    +     R  + ++IDG+V K
Sbjct: 233 TEGFRPATLHQAYLALQAWGLPVSQHTTLVADLAGVQERIDYWGEHRHEVDHEIDGVVVK 292

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G
Sbjct: 293 VDDVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAG 352

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN   +K            + + +GD V++++AG+VIP+V+  +V+ R    
Sbjct: 353 STVAQATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSE 401

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P+ CP C + +         +  A  RC    +C  Q  ER+ H  SR+A +IE 
Sbjct: 402 REFVMPTTCPECGTPL-----APEKEGDADIRCPNTRSCPGQLRERVFHVSSRNALDIEM 456

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +           A  I    D+F L   +   T       G    +   L  +++K 
Sbjct: 457 LGYEAGAALLS----ARVIGDEGDLFGLTEEELLRTDLFRTKAGDLSANGRRLLANLDKA 512

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L R + +L IRHVG   AR+LA  + S           +A           V  VG
Sbjct: 513 KAAPLWRVLVALSIRHVGPTAARALATEFGSIDAIVSATTEQLAA----------VEGVG 562

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             IA A+ E++    +   VE             + +V   +    +V TG+L    R +
Sbjct: 563 PTIASAVSEWFTVDWHREIVEKWRAAGVRMADERDDSVPRTLAGVTVVVTGSLPGFSRDE 622

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           A+E +   G   +  +S+KT  ++ GD PGSK +KA +LGV I++E+ F  LL+Q    
Sbjct: 623 AKEAIVTRGGKAAGSVSKKTSYVVAGDAPGSKYDKAVELGVPILDEDGFRKLLEQGPPA 681


>gi|1352293|sp|P49422|DNLJ_THESC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|609276|emb|CAA82645.1| DNA ligase [Thermus scotoductus]
 gi|1093606|prf||2104272A DNA ligase
          Length = 674

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/712 (33%), Positives = 386/712 (54%), Gaps = 52/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK ++ L   I YH+  YY  + P I D+EYD L R    +   FP+L   + P
Sbjct: 1   MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEL---KSP 57

Query: 72  NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G +   +    + H     SL+  +N ++L+ F  RI R   +  +    +T+
Sbjct: 58  DSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFNFDELKAFEERIGRALGR--EGPFAYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE G  V+ A RGDG  GE+V+  +  IPTIPR +   +PE +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEDGVLVWGATRGDGEVGEEVTQNLLTIPTIPRRVK-GVPERLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKT-SE 248
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P    R  L    + LG    E
Sbjct: 175 VYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSLRQKDPRITARRGLRATFYALGLGLEE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q ++L  +R  GFPV +G  +A    G+   Y      R +LP++ DG+V K+DE
Sbjct: 235 SGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKLDE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SL ++LG  AR+PR+ I++KF  ++  TRLL +  Q+GRTG +TPV  LEPV I G+++
Sbjct: 295 LSLWRELGYTARAPRFAIAYKFPAEEKETRLLQVVFQVGRTGRVTPVGILEPVFIEGSVV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE YI+ L           D+R+GD VLV +AG VIP+V+ ++  +R  + +P 
Sbjct: 355 SRVTLHNESYIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKEKRTGEERPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +I GLG+
Sbjct: 404 RWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIGGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       ++  AD++ L++       ++      G+ S  NL   I + +  
Sbjct: 455 KLIEKLLEK----GLVKDVADLYRLKKEDLLGLERM------GEKSAQNLLRQIEESKGR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +++LG+  VG  +AR+LA ++ +     +               L++V  VG++ 
Sbjct: 505 GLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEASL----------EELLQVEEVGELT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ I E  Q+P     V  L +         ++     ++    V TG L +  R + + 
Sbjct: 555 ARGIYETLQDPAFRDLVRRLKEAGVVM--EAKERGEEALKGLTFVITGELSRP-REEVKA 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  + EE+   L+++
Sbjct: 612 LLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLIEE 663


>gi|94984803|ref|YP_604167.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300]
 gi|122986680|sp|Q1J0I6|DNLJ_DEIGD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94555084|gb|ABF44998.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300]
          Length = 684

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/707 (30%), Positives = 349/707 (49%), Gaps = 46/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +   +L  EI  H+  YY+   P I D EYD L R   A+  A P+       N P   +
Sbjct: 22  EHYLALRAEIERHNRAYYELDAPEIPDDEYDRLVRELRALEAAHPEWVAE---NSPAQTV 78

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIFFTLEPKIDGT 137
           GG  + +   V H  P  SL+ +++ E+L ++  ++ R      D +   +T E KIDG 
Sbjct: 79  GGAPSSAFLPVEHPTPMTSLDNVFSDEELAEWQEKLARALNLPPDHDGFTYTGELKIDGL 138

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y  G   +AA RG+G  GE V+  +  IP IPR L   +   +EVRGEVY+S+ D
Sbjct: 139 SVNLYYADGVLQWAATRGNGRVGEMVTEQVLTIPGIPRALP-GLTGELEVRGEVYLSRAD 197

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F A N     +G     NPRN A+G LR+ +P    TR+L    + LGK   +  + Q E
Sbjct: 198 FAAFNARAEELGLPLLKNPRNGAAGALRQKDPEVTRTRHLKALFYSLGKHDGVPVRTQGE 257

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L  +   GFP +              Y+  M + R+   +D DG V K+D  +LQ + G
Sbjct: 258 VLAWLAEQGFPTSRYSETFTGLQAAADYHRRMTAQRAQFEFDADGTVLKLDSLALQAEAG 317

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW +++KF  ++  T L  I + +GRTG L P+A L P  I G+ ++ ATLHNE
Sbjct: 318 STSRAPRWAVAYKFPVEEVETVLESITVNVGRTGKLAPLAHLSPRLIEGSTVSKATLHNE 377

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+ L           D+R+GD V+V+++G VIP+++ +++ +R PDA P+ FP+ CP 
Sbjct: 378 DYIRDL-----------DLRIGDTVVVRKSGGVIPQIMRVVLEKRPPDAAPYRFPTHCPE 426

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   VVR       +  A   C    AC AQQ ERL++FVSR A ++ G+G++ ++    
Sbjct: 427 CGHEVVR------AEGDANTYCPNP-ACPAQQFERLRYFVSRGAMDVRGVGEKLIEQLLA 479

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      +   AD++ L   Q  S  +       G+    N+   +   +   L R I +
Sbjct: 480 T----GLVHDAADLYQLTAEQLASLERS------GEKKAANILAQLEASKTRPLWRLINA 529

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI HVG   A++LA+ + +           I            VP +G  IAQ++    
Sbjct: 530 LGINHVGERNAQALARAFGTLDALLAATPESIEA----------VPGLGRTIAQSVSAAL 579

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            +P     +  L +     +          +     V TGTL +  R + +  +   GA 
Sbjct: 580 ADPSMQDLIRRLRERGLKPVEETAPR-GDALAGLSFVLTGTLSRP-RDEIKARLESAGAR 637

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +++KT  +I G+  GSKL++A++LG+ +++E     LL++   
Sbjct: 638 VTGSVTKKTSYLIAGEEAGSKLDRARELGIPVLDEAGLGALLEERGV 684


>gi|225873424|ref|YP_002754883.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196]
 gi|254781243|sp|C1F7S7|DNLJ_ACIC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225792636|gb|ACO32726.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196]
          Length = 677

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/721 (34%), Positives = 366/721 (50%), Gaps = 53/721 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S   A +++ SL + I +H+  YY   +P I D  +D L R+   +    P+L     P
Sbjct: 1   MSHASAAQQIESLRESIRHHEYLYYVQDQPEIDDLAFDELMRKLQRLEAEHPELI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      KV HS P LSL+ + + E+LR +  R+     +     I +  E
Sbjct: 58  DSPTQRVGGKPKEGFAKVAHSRPMLSLDNVNSEEELRDWERRVREQAGQNA--EIEYVCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL------NIPEII 185
            K+DG  + + Y  G+      RGDG  GEDV+  +R I ++P  ++        +P   
Sbjct: 116 YKLDGLSMALHYRDGQLARGLTRGDGEIGEDVTTNVRTIRSVPLSIADGKLQQAKMPANF 175

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH-GL 243
           EVRGEV +    F  LN+E  A G  P ANPRNAA+G +R L P  +  R L+F+ +  L
Sbjct: 176 EVRGEVVMPFTAFEKLNEEREAQGLAPAANPRNAAAGTIRTLEPNIVAQRRLDFYAYFAL 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            +  E     Q E L  +  LGF VN     A +   +V + N  +  RS L Y+IDG+V
Sbjct: 236 TEKGEDAFGEQEEALDALATLGFRVNQHRHAAKSIETVVEFVNRAEEHRSRLGYEIDGVV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+   LQ++LG   R+PRW +++KFA +   T++ DI +Q+GRTG LTPVA L PV +
Sbjct: 296 VKVNSAVLQRRLGYTGRAPRWAVAYKFAARSGVTQVEDIQVQVGRTGKLTPVAWLAPVQV 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN-ERH 422
           GG  +T ATLHN D I+ L            +R+GD V ++R G+VIPKVV+++ + E  
Sbjct: 356 GGTTVTRATLHNADEIERL-----------GLRIGDFVRIERGGDVIPKVVEVVDDAEHP 404

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + F FP  CP C S VVR          A +RC     C A+  E L HF SR   N
Sbjct: 405 RGTKHFHFPHACPACGSEVVRTPGE------ADYRCVNT-DCPARLRESLLHFASRGVMN 457

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG+G+  +            ++  +DI++L   Q  S  ++      G  S T L   I
Sbjct: 458 IEGMGEAIVMQLLGR----GLVKTVSDIYSLTEEQLVSLERM------GKKSATALLGEI 507

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           +K R   L+R +F LGIR VG   A++LA+ Y S     Q     +           RV 
Sbjct: 508 DKSRQAPLDRVLFGLGIRFVGERTAQALAEEYGSMDALMQASREELE----------RVN 557

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG  +++AI EF+  PRN   VE L +      G   K   S++     V TGTL  + 
Sbjct: 558 DVGPRVSEAIREFFDEPRNRDLVERLREAGLRFTGEKRKKT-SQLAGLTFVLTGTLPGLS 616

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A+  +   G  VS  +S+KT+ ++ G + GSKLEKA  LGV +++E   + +L+   
Sbjct: 617 RDEAKGKIENAGGHVSGSVSKKTNYVVAGADAGSKLEKANSLGVPVIDEAALIKMLETEQ 676

Query: 723 T 723
            
Sbjct: 677 A 677


>gi|227893041|ref|ZP_04010846.1| DNA ligase [Lactobacillus ultunensis DSM 16047]
 gi|227865154|gb|EEJ72575.1| DNA ligase [Lactobacillus ultunensis DSM 16047]
          Length = 667

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/715 (30%), Positives = 370/715 (51%), Gaps = 52/715 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL  +++   D YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MTEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELERQFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++ ++L++F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKDELKEFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A  R I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANARYIADIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GE Y+ K  F  LN+E    G   + NPRNAA+G LR+L+P    R  L+ F++      
Sbjct: 172 GECYMGKKAFAKLNEEREEQGLTVFVNPRNAAAGSLRQLDPKVTKRRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ + +M  LGF  N   R+  T   I ++ +E  + R++L Y IDG+V K+D
Sbjct: 232 EGII-SQHQAIDRMHELGFHTNETGRKLATLDEIFAFIDEYTAKRNSLTYGIDGIVLKID 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  
Sbjct: 291 DLNIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D++ 
Sbjct: 351 VARASLHNPDYLN-----------EKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSEV 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG
Sbjct: 400 YHIPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +      +     +   AD++ L             +  F + S+ NL  +I+  + 
Sbjct: 453 PKIVKQLIAKD----LVHNVADLYHLNADDLA------QLDHFKEKSINNLLTAIDNSKK 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  I  LGI HVGA+ AR +A+ + + +         IA           +  +G  
Sbjct: 503 NSVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSLGVQDIA----------SIDTIGMT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           IA+++  ++  P     VE L +            E    +  ++K +V TG L+   R 
Sbjct: 553 IAESMTTYFAQPEAQKLVEELRESGLNMDYLGEDEEVAPDNPFKDKTVVLTGKLEHYTRS 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +  LGA V+  +S +TD +I G + GSK  KAQQLGV ++ EE  +  ++
Sbjct: 613 EFTKKLQALGAKVTGSVSHRTDYVIYGKDAGSKYNKAQQLGVPLLTEEDAIAQIE 667


>gi|255535523|ref|YP_003095894.1| DNA ligase [Flavobacteriaceae bacterium 3519-10]
 gi|255341719|gb|ACU07832.1| DNA ligase [Flavobacteriaceae bacterium 3519-10]
          Length = 667

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/710 (30%), Positives = 367/710 (51%), Gaps = 49/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  ++++ +L +EI  H+  YY   +P I D E+D   +    +   FP+     D N 
Sbjct: 2   PENIQQKIDALRKEIHQHNYSYYSLDEPTISDFEFDLKLKELQDLELQFPEF---YDNNS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG++  +   V H     SL+  ++  DL ++  RI +         + F  E K
Sbjct: 59  PTLRVGGQITKNFPTVQHQFRMFSLDNSYDFNDLEEWEKRIRKTLN----EPVEFVAELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I+I YE GK   A  RGDG  G+++++ ++ I  IP  L  + PE   +RGE+Y+
Sbjct: 115 YDGASISILYENGKLNEAVTRGDGFQGDEITSNVKTISQIPMQLHGDFPERFFMRGEIYL 174

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
           +  +F  +N      G  P+ NPRN ASG L+  +  ++  R L+  ++    +    A+
Sbjct: 175 THQNFEKINKRREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSAVLYQFI-SENTAAQ 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +E+LQK +  GF +++  +       + ++ N     R TL +DIDG+V KV++ + Q
Sbjct: 234 THWELLQKAKSWGFRISDQAKLCADLDEVKAFINFWDENRHTLAFDIDGIVVKVNDLAQQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A+SPRW +++K+  ++A T L  +  Q+GRTG +TPVA L+PV + G ++  A+
Sbjct: 294 RVLGYTAKSPRWAMAYKYKAEKAETELQTVTYQVGRTGAITPVANLKPVLLAGTVVKRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I+ L            +   D V V++ GE+IPK+V + + +R+P      +  
Sbjct: 354 LHNEDIIRKL-----------GLYEHDFVYVEKGGEIIPKIVGVNLAKRNPANAEIQYIK 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + ++R  +       A H C   L C  Q + R+ H+VSR A NIE LG + ++
Sbjct: 403 NCPECSTALIRVEDQ------AIHFCPNELHCPPQVIGRMIHYVSRKALNIENLGSETIE 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++ +     +  PAD + L + Q     ++       + S  N+   I K + I+ E+
Sbjct: 457 QLYREK----LVENPADFYALTKEQLLPLERMA------EKSAQNIITGIEKSKEIAFEK 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F +GI+HVG  +A+ L K + S  +        +          ++V  +G  IA++I
Sbjct: 507 VLFGIGIKHVGETVAKKLVKNFNSIDDLKNATAAEL----------VQVEDIGLKIAESI 556

Query: 613 VEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            EF++NP N+  +E L              + +S+ ++ K  +FTG L    R  A+E V
Sbjct: 557 TEFFKNPENVLMIERLKSYGVKLEKGADTHEVLSNALDGKTFLFTGKLSLFTRDDAEEMV 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
            + G    + +S+  D ++VG+  GSKL+KAQ++G + I++E+QFL LLQ
Sbjct: 617 EKHGGKNISAVSKNLDFLVVGEKAGSKLKKAQEIGTITILDEQQFLDLLQ 666


>gi|58336856|ref|YP_193441.1| DNA ligase [Lactobacillus acidophilus NCFM]
 gi|227903415|ref|ZP_04021220.1| DNA ligase [Lactobacillus acidophilus ATCC 4796]
 gi|75357942|sp|Q5FLL4|DNLJ_LACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|58254173|gb|AAV42410.1| DNA ligase [Lactobacillus acidophilus NCFM]
 gi|227868891|gb|EEJ76312.1| DNA ligase [Lactobacillus acidophilus ATCC 4796]
          Length = 668

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/716 (29%), Positives = 372/716 (51%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE S L  ++    D YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MADITLDEAKKEASLLRNQLDKWADAYYSKDAPEVEDNVYDQKYSRLLELEKQFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GGE++    KV H+IP LS+  +++ ++L+ F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGEIDSDFTKVEHAIPMLSMGDVFSKDELKDFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK + A+ RG+G+ GEDV+A  R I  IP+ L    P  IEVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLMRASTRGNGYVGEDVTANARYIADIPQTLPE--PLTIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN+E    G   +ANPRNAA+G LR+L+P     R L+ F++      
Sbjct: 172 GECYMGKEAFAKLNEERENEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q+E +++M+ LGF  N   ++  +   I ++ +E  + R +L Y IDG+V K+D
Sbjct: 232 E-DITSQHEAIKRMQELGFHTNETGQKLASLEEIFAFIDEYTARRDSLAYGIDGIVLKID 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + ++++ LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  
Sbjct: 291 DLNIERSLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN DY+             +D+R+GD V + +AG++IP++ ++++++R  D+ P
Sbjct: 351 VARASLHNPDYLN-----------EKDVRLGDTVKLHKAGDIIPEISEVVLSKRPVDSVP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG
Sbjct: 400 YVIPENCPSCGHKLVHLQDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +     ++     +   AD++ L             +  F + S+ NL  +I+  + 
Sbjct: 453 PKIVKQLIAND----LVHNVADLYHLSAEDLA------QLDHFKEKSINNLLTAIDNSKK 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  I  LGI HVGA+ AR +A+ + +           +A           +  +G  
Sbjct: 503 NSVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSLGVQDLA----------SIDTIGMT 552

Query: 608 IAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++  ++  P     +  L               E    +  ++K +V TG L+   R
Sbjct: 553 IAESMTTYFAQPEAQEMIADLEKSGLNMEYLGEDEPEDIPDNPFKDKTVVLTGKLEHYTR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + +  LGA V+  +S+KT+ +I G + GSK  KA+QLG+ ++ EE+ +  ++
Sbjct: 613 SEFTKRLQALGAKVTGSVSKKTNYVIYGQDAGSKYNKAEQLGIPLLTEEEAIAQIK 668


>gi|298245037|ref|ZP_06968843.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963]
 gi|297552518|gb|EFH86383.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963]
          Length = 700

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/701 (30%), Positives = 360/701 (51%), Gaps = 50/701 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E+  K ++ L  +I   +  Y+    P + D+EYD L      I    P+L     P  
Sbjct: 29  EERLAKRVAELRHQIEEANYQYHVLDNPTLSDAEYDQLMIELQRIEGEHPELV---TPES 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G      + + +H +P LSL    + ++L  +  R         + +  +  E K
Sbjct: 86  PTQRVGAGPLQDVAQYSHPVPMLSLANARSEKELYDWYKRAQNILP---NATFTYVCELK 142

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEV 191
           IDG  + + Y++G+    A RG+G  GED +  +R I +IP+ L     IPE +EVRGE+
Sbjct: 143 IDGLAMALTYDQGRLTMGASRGNGLVGEDWTPNVRTIRSIPQKLHDAAPIPEKVEVRGEI 202

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+S   F  LN++M     K +ANPRNAA+G LR+ +P    TR L+FF + +G    + 
Sbjct: 203 YMSTQSFEKLNEQMAEN--KLFANPRNAAAGSLRQKDPRITGTRNLDFFGYQIGYVQGMR 260

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  +E LQ ++  GFP+N  V+ A+T   ++++ N+ +  R  LPY+IDG+V K+++ +
Sbjct: 261 IQSHWETLQLIKEWGFPLNPHVQLAHTLEEVMAFCNKWEHERFNLPYEIDGVVIKINDLA 320

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  AR PRW I+ K+   Q +TRLLDI + IGRTG + P A LEP+NI G  ++ 
Sbjct: 321 HQEELGVVARDPRWAIAFKYPPIQVATRLLDIKVNIGRTGSVNPWAELEPINIRGVTVSR 380

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNE+ I+            +D+RVGD VLV+RAGEVIP+VV  ++ +R    + +  
Sbjct: 381 ASLHNEEDIQR-----------KDLRVGDWVLVQRAGEVIPQVVKPVMEKRTGSEEVYHL 429

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C + ++R  +       A   C   L C A+  E   HFVS+ A +++ +G++ 
Sbjct: 430 PENCPRCGTAIIRIPDQ------AMAYCPN-LQCPARNFESFTHFVSKGAMDMDTIGEKT 482

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +   +    A  ++  +D + L R           + G  + S  N+ ++I   +   L
Sbjct: 483 CEQLME----AGYLQSVSDFYHLTRDDLL------ELEGIKEKSANNMLNAIEASKQRPL 532

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F L IR+VG + A+ LA  +                       +  VP +G  I Q
Sbjct: 533 SRLLFGLNIRYVGEKTAQLLADAFGDMDTLMAASEA----------QINEVPGIGPKIGQ 582

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ +++Q   N   +E L +    ++    K+V   +  +  + TG L  + R  A+E +
Sbjct: 583 SVAQWFQQEENQALIERL-RAAGLNMREERKHVEGPLTGQSFLLTGRLNTMTRTAAEEAI 641

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
             LG  +++ +S+    +I G++ GSKL KAQ+  V + +E
Sbjct: 642 KALGGTIASGVSKSLSHLIAGEDAGSKLAKAQKAKVPVHDE 682


>gi|239982451|ref|ZP_04704975.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
          Length = 728

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/742 (28%), Positives = 344/742 (46%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
              AR+    L +++  H   YY   +P++ D+E+D   R    +   +P L     P+ 
Sbjct: 11  PADARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPL---RTPDS 67

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G+       V H    LSL+  ++ E+L  +  R+ +       +   F  E K
Sbjct: 68  PTQKVAGQYETEFTSVQHRERMLSLDNAFDDEELAAWAERVAKEVGAPGYH---FLCELK 124

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG  GED++  +R I  IP  L   ++P ++E+RGEV+
Sbjct: 125 VDGLAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTISDIPERLHGDDLPALVEIRGEVF 184

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               +F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 185 FPMEEFEKLNARLVEAGEKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREGFTI 244

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                    +R  G P     +      G+ ++       R ++ ++IDG+V K+DE  L
Sbjct: 245 DCLSHAYDLLRSWGLPTARHNKVVEGLDGVRAFITYYGDHRHSVEHEIDGVVVKLDEVPL 304

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PRW I+ K+  ++ ++RL+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 305 QGRLGSTSRAPRWAIAWKYPPEEVNSRLIDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 364

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D ++            + + +GD V++++AG+VIP+++  + + R    +PF+ P
Sbjct: 365 TLHNQDVVRA-----------KGVLIGDTVVLRKAGDVIPEILGPVADLRDGTERPFTMP 413

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC    +C AQ  ER+ +   R   +IE  G    
Sbjct: 414 AECPECSTPL-----KPMKEGDIDLRCPNARSCPAQLRERIYYLAGRKCLDIENFGYVAA 468

Query: 492 DFFFKSEDPAF-SIRIPADIFTLQRRQQ--------------------TSTTK----IEN 526
               +  +P+   +R   D+F L   Q                     T   K      N
Sbjct: 469 TALTQPLEPSEPPLRDEGDLFDLTVDQLLPIRSYVLDPDSGLPKRDPKTGEEKIVTFFAN 528

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + D I   +   L R +  L IRHVG   A++LA+ + S +        
Sbjct: 529 KQGEAKKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATEE 588

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVS 644
            +A              VG  IA ++  ++    +   V    +           E    
Sbjct: 589 ELAQT----------EGVGPTIAASLKSWFAEEWHREIVRKWREAGVRMEEESTGEDEGP 638

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q 
Sbjct: 639 RPLEGLTVVVTGTLEHHTRDNAKEALQNQGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQA 698

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
            V +++E  F  LL Q     R
Sbjct: 699 KVPVLDEAGFAVLLDQGPDAAR 720


>gi|110833810|ref|YP_692669.1| NAD-dependent DNA ligase LigA [Alcanivorax borkumensis SK2]
 gi|123345666|sp|Q0VR01|DNLJ_ALCBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110646921|emb|CAL16397.1| DNA ligase (NAD+) [Alcanivorax borkumensis SK2]
          Length = 777

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/796 (30%), Positives = 380/796 (47%), Gaps = 125/796 (15%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +  SL  +++     YY    P + D+EYD + R    +   +PDL  +   + P  ++G
Sbjct: 10  QAQSLRDQLNDWSYRYYVQDDPAVPDAEYDRVFRALKDLEAQYPDLVTA---DSPTQRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                +  +V H +P LSL+  ++ E+L  F  RI       +   I +  EPK+DG  +
Sbjct: 67  DVPLDAFEQVQHEVPMLSLDNAFDDEELWAFDKRIRERLDVSE--IIDYVAEPKLDGLAV 124

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDF 198
           ++ YE G+ V AA RGDG +GE+++   R I ++P  L  N +P+ +EVRGEV +    F
Sbjct: 125 SLLYENGELVRAATRGDGQTGENITVNARTIRSVPLKLRGNDVPKRLEVRGEVVMPHAGF 184

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQYE 256
             LN      G K +ANPRNAA+G LR+L+     +R L F+ + + +            
Sbjct: 185 EELNARQQEAGLKLFANPRNAAAGSLRQLDSRITASRPLEFYAYSMAQLEGWEHPPTHSA 244

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ML  +R  G  VN  +R  +    ++ +Y  +   R  L YDIDG+VYKV+ F  Q  LG
Sbjct: 245 MLDALRDWGLRVNPEIRVCHGVEALLRFYQGILEKREHLDYDIDGVVYKVNRFDWQDDLG 304

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+HKF  ++  T L  +D Q+GRTG LTPVARLEPV++GG +++NATLHN 
Sbjct: 305 FVSRAPRWAIAHKFPAQEELTVLNGVDWQVGRTGALTPVARLEPVHVGGVIVSNATLHNI 364

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+GD V+V RAG+VIPKVV  +   R  +AQ  + PS CP+
Sbjct: 365 DEIQRL-----------DIRIGDTVVVYRAGDVIPKVVRALPERRPANAQGIALPSSCPV 413

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++R      G      RCTGGL C  Q+ E +KHF SR A +I+GLG + +D    
Sbjct: 414 CGSEILR------GHDQVVARCTGGLICGDQRREAIKHFASRRAMDIDGLGDKLVDALVD 467

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I   AD++ L+  Q     ++      G+ S  NL  ++   + + L RF+F+
Sbjct: 468 QE----LITTVADLYRLKAEQVAGLERM------GEKSADNLIAALEASKTVGLGRFLFA 517

Query: 557 LGI--------------------------------RHVGAEIARSLAKYYLSYQNFAQEI 584
           LGI                                  VG E+A+++  ++    N    I
Sbjct: 518 LGILQIGEETAKNLADCFGDLDSIRHAPLLLLLAVPDVGLEVAKAIGAFFAESDN-EAVI 576

Query: 585 NNIIAHNNDDWLSLI-----------------------RVPLVGDIIAQAIVEFYQ---- 617
           + ++A       S +                        +  +GD     +   ++    
Sbjct: 577 DGLLAQGVSPQASGVPSAAFVKSLTLAQLLKSAKRLGMNLEGIGDKSLDILGSHFRTVTE 636

Query: 618 -----------------------------NPRNICAVEALLKEVSPSIGR-HEKNVSSEI 647
                                               ++   K+V+    R  ++  S  +
Sbjct: 637 LSAAAAEGAGAEPKGVRSGVMTQLAKALAENDWRGRLQDAEKKVADMAARAPQEMESQPL 696

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           E +  V TGTL++  R++A++ + QLGA V+  +S+ T +++ G + GSKL KA+ LG++
Sbjct: 697 EGQTWVLTGTLEQFTRNQAKQALQQLGAKVAGSVSKNTRMVVAGASAGSKLAKAESLGIE 756

Query: 708 IMNEEQFLFLLQQYNT 723
           + +E   L LL Q+  
Sbjct: 757 VCDEAALLSLLNQHGI 772


>gi|118617527|ref|YP_905859.1| NAD-dependent DNA ligase LigA [Mycobacterium ulcerans Agy99]
 gi|166216215|sp|A0PPW9|DNLJ_MYCUA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118569637|gb|ABL04388.1| DNA ligase [NAD dependent] LigA [Mycobacterium ulcerans Agy99]
          Length = 683

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/712 (30%), Positives = 349/712 (49%), Gaps = 43/712 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L +++  H   YY    P+I D+E+D L RR +A+   +P+L     P+ P   +
Sbjct: 3   RQWQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPEL---RTPDSPTQLV 59

Query: 79  GGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG         V H    LSL+  +N E+L  +  RI+        +S  +  E KIDG 
Sbjct: 60  GGAGFATEFEPVEHLERMLSLDNAFNTEELTAWAGRIHADVG----DSAAYLCELKIDGV 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEVYI 193
            +++ YE G+   A+ RGDG +GEDV+   R I  +P  LS +     PE++EVRGEV+ 
Sbjct: 116 ALSLVYEGGRLTRASTRGDGRTGEDVTLNARTIEDVPERLSHSEDHRMPEVLEVRGEVFF 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAK 252
              DF ALN  ++  G+ P+ANPRN+A+G LR+ +P    R  L    HGLG T      
Sbjct: 176 RVADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTEGFRPA 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++    ++  G PV+           + +  +     R  + ++IDG+V KVD+ +LQ
Sbjct: 236 TLHQAYLALQAWGLPVSQHTTLVADLAEVQARIDYWGEHRHEVDHEIDGVVVKVDDVALQ 295

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  AT
Sbjct: 296 RRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVAQAT 355

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   +K            + + +GD V++++AG+VIP+V+  +V+ R    + F  P+
Sbjct: 356 LHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPT 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +         +  A  RC    +C  Q  ER+ H  SR+A +IE LG +   
Sbjct: 405 TCPECGTPL-----APEKEGDADIRCPNTRSCPGQLRERVFHVSSRNALDIEMLGYEAGA 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                   A  I    D+F L   +   T       G    +   L  +++K +   L R
Sbjct: 460 ALLS----ARVIGDEGDLFGLTEEELLRTDLFRTKAGDLSANGRRLLANLDKAKAAPLWR 515

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +L IRHVG   AR+LA  + S           +A           V  VG  IA A+
Sbjct: 516 VLVALSIRHVGPTAARALATEFGSIDAIVAATTEQLAA----------VEGVGPTIASAV 565

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            E++    +   VE             + +V   +    +V TG+L    R +A+E +  
Sbjct: 566 SEWFTVDWHREIVERWRAAGVRMADERDDSVPRTLAGVTVVVTGSLPGFSRDEAKEAIVT 625

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            G   +  +S+KT  ++ GD PGSK +KA +LGV I++E+ F  LL+Q    
Sbjct: 626 RGGKAAGSVSKKTSYVVAGDAPGSKYDKAVELGVPILDEDGFRKLLEQGPPA 677


>gi|163782033|ref|ZP_02177032.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882565|gb|EDP76070.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 715

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 381/714 (53%), Gaps = 52/714 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A++ +  L + I+YHD  YY  + P+I D EYD L R    +   +P+L     P+ P
Sbjct: 30  EEAQEYVQELREVINYHDYKYYVQASPVISDYEYDQLFRALRDLEKKYPELI---TPDSP 86

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++  E+  +   V H  P LSL+  +  E+LR F  R+         + + +++EPK 
Sbjct: 87  TQRVASEITGAFPTVRHYTPMLSLDNAYTEEELRDFDRRVRELTGL---DVVEYSVEPKY 143

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192
           DG  I + Y    FV  A RGDG +GED++  +R + TIP     +   I  IE+RGEV 
Sbjct: 144 DGAGIALLYRDDLFVRGATRGDGETGEDITNNLRTVRTIPLKAEFSRFGIRLIELRGEVL 203

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH--GLGKTSEI 249
           I++ +F  +N+E +  G  P+ANPRNAA+G +R  NP ++  R L+  V+     +    
Sbjct: 204 INREEFRKMNEERLEEGLPPFANPRNAAAGSIRLQNPAEVAKRKLDAVVYQVSYVEPESR 263

Query: 250 FAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                YE ++ +  LGF      ++       ++ Y  E +  R   PY+IDG+V KV+ 
Sbjct: 264 HPNTHYEAIEMLHLLGFKTPFPDMKLCKGIDEVIEYCREWEEKREEYPYEIDGMVVKVNR 323

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               + LG  +  PRW I+ KF  KQA+T+L+D+  Q+GR G +TPV +LEPV IGG ++
Sbjct: 324 KEYYEVLGFTSHHPRWAIAFKFKPKQATTKLIDVVFQVGRVGTITPVGKLEPVEIGGVVV 383

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           ++ +L NED+I+            +DIR+GD VLV+RAG+VIP VV++I   R  D  P 
Sbjct: 384 SSVSLFNEDFIR-----------EKDIRIGDLVLVERAGDVIPYVVEVIKEARDGDEVPI 432

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C S++V+           A RC   ++C AQ + RLKH+ SR+A +I GLG+
Sbjct: 433 EFPDRCPSCGSKLVKLPGE------VAWRCIN-ISCPAQVVLRLKHWGSREAMDIRGLGE 485

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                 ++       ++   D++ L+            + GF + S  NLY++I + +N 
Sbjct: 486 ATSKALYEK----GLVKDVGDLYYLKVVDLM------KLPGFAEKSAMNLYNAIQESKNR 535

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L+R ++ LGIR+VG   A+ L+          Q I++I    +     L  +  +GD++
Sbjct: 536 GLDRVLYGLGIRYVGLTTAKKLS----------QVIDSIWDLRDMPVEKLEAIEGIGDVV 585

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A++I EF+    N+  +E L       + R +      ++    VFTGTL+   R +A E
Sbjct: 586 ARSIKEFFSREENVKVIEKL-DRAGVKLRRTKLEKEGPLKGMVFVFTGTLRCCSRERAGE 644

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQY 721
            V  LG   S  ++ KT  ++VG+ PG  KL +A+QLG+K++NEE FL +++ Y
Sbjct: 645 LVESLGGTFSNSVTSKTTYLVVGEEPGRTKLRRAEQLGIKLLNEEDFLNMVKDY 698


>gi|291530728|emb|CBK96313.1| DNA ligase, NAD-dependent [Eubacterium siraeum 70/3]
          Length = 660

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/710 (32%), Positives = 366/710 (51%), Gaps = 51/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQ + E   L ++   H+  YY    P I D EYD L RR   I    P++      
Sbjct: 1   MDKEQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIV---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG    +  KVTH +   SL+ +++  +L +F  R+ +   K       + +E
Sbjct: 58  SSPTQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERVKKAVGK-----AVYCVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ Y+ G F   + RGDG  GED++  ++ I +IP VL   IP  IEVRGEV
Sbjct: 113 PKIDGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMVLREKIP-FIEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K DF  L  + +    +P  NPRNAA+G LR+ +     +R L+ FV  L +     
Sbjct: 172 YMPKADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIEGRE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  M+ LGF V +G +  +     VS   E+   R +  YDIDG V KVD+F 
Sbjct: 232 LTCHSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDDFE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L+ +LG  A+ P+W ++ K+  ++  T+LLDI+I +GRTG LTPVA  EPV + G  ++ 
Sbjct: 292 LRNELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A LHN+DYI             +DIR+GD + V++AG++IP+VV  + +    +++PF  
Sbjct: 352 AVLHNQDYIDS-----------KDIRIGDIIAVRKAGDIIPEVVRSVSHA--ENSEPFVI 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C  +  R  +       A  RC   + C AQ L+ ++HF SR A NI+GLG+  
Sbjct: 399 PHICPVCHGKAERAEDE------AVIRCVN-IDCPAQLLKNIEHFASRPAMNIDGLGEAV 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    ++      I   AD+++LQ++        E + GF  VS + L  +I   +  S 
Sbjct: 452 VKQLVENR----LISTVADLYSLQQQDL------EMLPGFAKVSASKLIANIENSKTNSP 501

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R +F+LGI+ +G + A+ L K + S +  ++  +  I+           V   GDI+A 
Sbjct: 502 DRLLFALGIKGIGQKNAQLLMKNFGSIEKLSETSSEEISA----------VENFGDILAN 551

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I      P     +E L      +        S ++     V TGTL  + R +A+  +
Sbjct: 552 NIFTALHEPHMTELIERLKSY-GVNTVYQSDVKSDKLAGLTFVITGTLPDMTRDEAKTLI 610

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            Q G   S  +S+KT  ++ G+  GSKL KAQQLGV +++++Q + ++ +
Sbjct: 611 EQNGGKCSGSVSKKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMIGE 660


>gi|226226196|ref|YP_002760302.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27]
 gi|254781336|sp|C1A6H2|DNLJ_GEMAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226089387|dbj|BAH37832.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27]
          Length = 689

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/723 (32%), Positives = 361/723 (49%), Gaps = 52/723 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M      P    ++E+AR     L +++      YY   +P + D EYD L R    I  
Sbjct: 1   MTASSGTPPHQ-TVERAR----ELREQLGTAQHEYYVLDRPTLSDQEYDRLFRELQGIEA 55

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +P L      + P  ++G  +  +     H +  LSL+  +++ +L  F   + R    
Sbjct: 56  EYPTLCTE---DSPTRRVGAPVQSAFSPHRHLVRMLSLDNAFDLSELEDFEQSLKRVVGD 112

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
               S  +T+E KIDG  + + Y +G  V AA RGDG  GEDV+A +R I  +P  L   
Sbjct: 113 AIHTS-GYTVELKIDGAAVALTYREGVLVTAATRGDGTDGEDVTANVRTIRGVPLRLHGD 171

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           N P ++EVRGEVY+    F  +N+  +A G   Y NPRNAA+G +R+L+      R L F
Sbjct: 172 NHPPLMEVRGEVYLPFAGFERMNEARVAAGEPVYVNPRNAAAGSMRQLDSANTAARPLRF 231

Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-KSIRSTLP 296
           F +          A+ Q+E+L+++   G PV    ++ +T     ++   +    R+TL 
Sbjct: 232 FGYAAVLPDGSAPARSQWELLEQLSAWGVPVAPHRQRCHTIQEAEAWATVVEHETRATLG 291

Query: 297 YDIDGLVYKVDEFSLQKQLGERA-RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           + IDG V KV++ +LQ +LG RA R+PRW ++ KFA   A T+L  ID+ +GRTG+LTP 
Sbjct: 292 FAIDGGVVKVNDMALQDELGIRADRTPRWGVARKFAPDMALTKLRRIDVNVGRTGVLTPF 351

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A LEPV++GGA +T A+LHN D I             +D+R GD V V RAG+VIP V+ 
Sbjct: 352 AVLEPVDVGGATVTFASLHNADQI-----------AAKDLREGDTVQVVRAGDVIPYVLG 400

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            +  +R    QP+S P+ CP C + V R  +        A  C   +AC  +QLE L HF
Sbjct: 401 PVPEQRDGSQQPWSMPTQCPRCNTPVERYGD------DVAVYCPN-VACPGRQLEGLVHF 453

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            S+DA +I+GL   ++         A  +   AD+F +   Q TS  +      F   S 
Sbjct: 454 SSKDALDIDGLSYARIQQLLD----AGLVHDVADLFDITVDQLTSLER------FAKKSA 503

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL  +I   +   L R +F LGIRHVGA+ A+ L++ Y S           +       
Sbjct: 504 ENLVAAIAAAKQQPLSRLMFGLGIRHVGAQAAQLLSRQYGSLDALMNATAEQLGA----- 558

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
                V  +G IIAQ++  ++ +P     +E L          +       +    +V T
Sbjct: 559 -----VRGIGSIIAQSVASYFADPTTRALMERLRARGLRFDEPNAVQADGVLTGATVVLT 613

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R +A   V Q G  V++ +S+KT  ++ G+  GSKL+KA++LGV ++ E + L
Sbjct: 614 GTLPSLSRGEATALVEQAGGRVTSSVSKKTTFVVAGEEAGSKLDKAKELGVTVLTEAELL 673

Query: 716 FLL 718
             L
Sbjct: 674 EKL 676


>gi|298208451|ref|YP_003716630.1| DNA ligase [Croceibacter atlanticus HTCC2559]
 gi|83848374|gb|EAP86243.1| DNA ligase [Croceibacter atlanticus HTCC2559]
          Length = 664

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/707 (30%), Positives = 365/707 (51%), Gaps = 49/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + ++  L +E+  H+  YY   KP I D ++D   ++   +    P+     D N P  
Sbjct: 3   VKDQIQQLREELRQHNYNYYVLDKPEISDYDFDQKLKQLQDLETENPEF---YDANSPTL 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++  +    TH     SL+  ++ EDL  +  RI +      D  + +T E K DG
Sbjct: 60  RVGGQVTKNFDTTTHDYRMYSLDNSYSKEDLEDWEKRIMKMV----DGDVHYTCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YE G+ + A  RGDG  G++V+  ++ I +IP  L+ + P+  ++RGE+ +   
Sbjct: 116 ASISLTYEDGELIRAVTRGDGFKGDNVTNNVKTIRSIPLKLNGDYPKRFDIRGEIILPLE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  +N E +A G + YANPRN ASG L+  + T+++ R L+  ++ +     +  K Q+
Sbjct: 176 GFTKMNAERVANGEEAYANPRNTASGSLKLQDSTEVSKRPLDCLLYSII-GKNLNFKTQF 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+K R  GF V      A +   ++++ N   + R  LPY+ DG+V KV+    Q++L
Sbjct: 235 EGLEKAREWGFKVPEVATLAKSTKEVMAFVNYWDTHRHDLPYETDGVVIKVNNLQQQEEL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++PRW +++KF  +Q ST L  I  Q+GRTG +TPVA L PV + G  +  A+LHN
Sbjct: 295 GYTAKAPRWAMAYKFKAEQVSTVLEKITYQVGRTGAITPVANLIPVQLAGTTVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           DIR  D V V++ GE+IPK++ +   +R  +++P  +   CP
Sbjct: 355 ADQIEKL-----------DIREEDTVFVEKGGEIIPKIIGVDFTKRDKNSKPTQYIEHCP 403

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C++ +VR+         A H C     C  Q + R++H++SR A +IEGLG + +    
Sbjct: 404 ECETPLVRNEGE------AQHYCPNEERCPPQVVGRIQHYISRKALDIEGLGGETVALLA 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  I+  AD++TL+        ++         S  NL + I   + I  ER +F
Sbjct: 458 N----AGLIKNYADLYTLKIEDVLPLERMAQ------KSAENLINGIEASKQIPFERVLF 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRHVG  +A++L K + + +N A          N     L+ V  +G  IA+++V F
Sbjct: 508 GLGIRHVGETVAKTLVKTFKTIENLA----------NAKEEELVEVEEIGGKIAESVVVF 557

Query: 616 YQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + +      V+ L +            +  ++++E + +V +G   K+ R + ++ +   
Sbjct: 558 FSDEYKKETVQRLKEYGVQLEISAEQLQGQTNKLEGEIIVVSGVFNKLSRTELKKAIEDN 617

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  VS+ +S KT  ++ G+N G SK  KA+ L V I+ E++FL  +Q
Sbjct: 618 GGKVSSSISSKTTYLVAGENMGPSKRTKAEGLNVPIITEDEFLDKIQ 664


>gi|258592875|emb|CBE69184.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [NC10
           bacterium 'Dutch sediment']
          Length = 684

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/721 (32%), Positives = 369/721 (51%), Gaps = 56/721 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R ++  L Q I  H+  YY   +P I D+E+D L +R   +    P+L     P+ P  +
Sbjct: 8   RAQVDDLRQLIRRHEYLYYVLDRPEITDAEFDTLYQRLQTLETQHPELI---TPDSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG        V H    LSL+  +N E+LR+F  RI R           + +EPK+DG 
Sbjct: 65  VGGRPVEGFASVQHKAAMLSLDNAYNAEELREFEARIKRALP---GERFTYVVEPKVDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISK 195
            + + YE G+ V  A RGDG  GEDV+  +  +  IPR L   +     +EVRGE++I +
Sbjct: 122 SVALLYEGGRLVRGATRGDGRYGEDVTQNLMTVRGIPRYLHGPLAACAALEVRGEIFIWR 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E+ A G +P+ANPRNAA+G +R+ +P     R L+ F++G+           
Sbjct: 182 QAFEKLNRELEAEGEEPFANPRNAAAGSVRQKDPRITEVRRLDIFIYGVSYAEPDPFTEH 241

Query: 255 YEMLQKMRCLGFPVNN---------GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           ++ + ++   GF ++            R+     G++  Y E+++ R  +  D DG+V K
Sbjct: 242 WQTMGQLLEAGFLLDPQDRKNTLERYRRRCADIDGVIQAYLEIEAARDEIGCDCDGVVVK 301

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    Q++LG     PRW +++KF  +QA++ +  ID+ +GRTG LTP A L+PV I G
Sbjct: 302 VDAIEQQRRLGSTTHHPRWAVAYKFPARQATSIIRKIDVNVGRTGALTPTALLDPVEIAG 361

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           A I+ ATLHN D I+ L           DIR GD VL++RAG+VIP ++ +I  +R PD+
Sbjct: 362 ATISRATLHNADEIERL-----------DIREGDTVLIERAGDVIPHILRVIQEKRPPDS 410

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF FP  CP+C ++  R             RCT   AC A+  E L HF +R A +IE 
Sbjct: 411 TPFCFPGQCPVCNAQAFRPEGE------VVSRCTNS-ACLARLKESLLHFGARRAMDIEH 463

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG+  ++     +     +R  AD++ L         ++         S TNL+++I   
Sbjct: 464 LGEAVVEQLVDRK----LVRELADLYRLDVATLAELERLAQ------KSATNLHNAIQGS 513

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L R +F+LGIR+VG  +A  LA++Y S     Q     +A           +  +G
Sbjct: 514 KGRGLSRLLFALGIRYVGEHVATILARHYGSMDRLEQAPEEELA----------EIFGIG 563

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             IAQ++  +++ P N   +E L +                +  K  V TG L+ + R +
Sbjct: 564 PRIAQSVALYFRQPENRRQIEQLREVGVSMKEAGVTAEPRPLAGKTFVLTGGLEGLTRDE 623

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           A+E + ++G  V++ +S+KTD ++VG +PGSK + A++LGV  ++E  F  L+ +   + 
Sbjct: 624 AKELIVRVGGRVTSTVSKKTDFVVVGKDPGSKFDDAKRLGVPTLDEVAFKELVSRGIESK 683

Query: 726 R 726
           +
Sbjct: 684 K 684


>gi|139438245|ref|ZP_01771798.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC
           25986]
 gi|133776442|gb|EBA40262.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC
           25986]
          Length = 742

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/735 (32%), Positives = 360/735 (48%), Gaps = 76/735 (10%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L  E+ YH   YY    P I D+ +D +      I  A+PDL     P+    ++GG +
Sbjct: 39  ELRHELDYHAYRYYMLDAPEITDAAFDKMLVELQEIEAAYPDLV---TPDSYTQRVGGYV 95

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           +     VTH     S++   ++++L  ++ R           ++ +T E KIDG  + + 
Sbjct: 96  SEQFTPVTHMARMYSMDDAMDLDELDAWLQRTEDALGA---GNVTYTCELKIDGLGVALT 152

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--------NIPEIIEVRGEVYIS 194
           Y+ G FV AA RGDG +GEDVS  +R I  +P  LS         +    IEVRGEVY+ 
Sbjct: 153 YQNGTFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEPALTHMGADRERTIEVRGEVYMP 212

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKG 253
           K  F+ LN+E  A GR P+ANPRNAA+G LR+ +P    R  L  F++ +  T  +    
Sbjct: 213 KGSFVRLNEEADAEGRDPFANPRNAAAGSLRQKDPKVTARRDLATFIYAIADTDPLHVHS 272

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q E L  +R  GF VN  V +  T   +  +  +    R  L YDIDG+V KVD F  Q 
Sbjct: 273 QREFLDWLRSAGFSVNPNVARCATPAEVHEFCAQALEHRGDLDYDIDGVVVKVDSFQQQL 332

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  AR+PRW I+ KF  ++  T L +I IQ+GRTG+LTPVA  +PV + G+ I  ATL
Sbjct: 333 DLGFTARAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEFDPVTVAGSTIARATL 392

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+            +++R GD ++V +AG+VIP+VV  ++++R  D+  +  P  
Sbjct: 393 HNIDEIRR-----------KNVREGDTIIVHKAGDVIPEVVGPVLDKRPADSVDWQMPEV 441

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S VV +          A+RC   + C AQ  ERL H+VSR   +++GLG + +D 
Sbjct: 442 CPVCGSPVVHEDGE------VAYRCV-SIDCPAQLKERLLHWVSRGCMDVDGLGDEIVDK 494

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTT--------------KIENILGFGDVSVTNLY 539
                  A  I   AD + L                       K  + +  G  +   + 
Sbjct: 495 MI----AAGLIHDVADFYQLTVDDIAGLDTGRTYASSNSKKGVKKGDPIPVGLKTAEKII 550

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
             +NK ++  L R +F+LGIRHVG  +   +A+ +LS       I+ +I  + +D     
Sbjct: 551 VELNKSKSQPLGRVLFALGIRHVGKSVGEVIAERFLS-------IDKLILASEEDIAEC- 602

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---------------SPSIGRHEKNVS 644
               +G  IA ++ +F   P N+  +E L +                 + +    E   +
Sbjct: 603 --EGIGPKIAASVKQFLAVPENLAVLERLRQAGLSLEVDLGAAHAQAAADAGVAGELADA 660

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +     V TGTL    R +A   +  LGA VS  +S+KT  ++ G   GSKL KA+QL
Sbjct: 661 QPLAGLTFVLTGTLVNRTRDEAGAALKVLGAKVSGSVSKKTSYLVAGPKAGSKLTKAEQL 720

Query: 705 GVKIMNEEQFLFLLQ 719
           GV +++E+    +L 
Sbjct: 721 GVPVLDEDALEQILA 735


>gi|330995784|ref|ZP_08319681.1| DNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329574514|gb|EGG56079.1| DNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 669

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/710 (30%), Positives = 360/710 (50%), Gaps = 51/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++++  L  E+  H+  YY  + P I D E+D + R    +  A P+    +DP+ P 
Sbjct: 4   EVKEQIERLRSELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEF---DDPDSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N    +V H  P LSL   +N +++  F  R+       +        E K D
Sbjct: 61  RRVGSDLNQEFVQVPHRYPMLSLSNTYNKQEVADFYERVRSGL---EGEPFEICCEMKYD 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  I++ YE+G+ V A  RGDG  G+DV+  ++ I  IP  L+ N  PE  E+RGE+ + 
Sbjct: 118 GLSISLTYEQGRLVRAVTRGDGVQGDDVTENVKTIRCIPLRLNGNGYPEEFEIRGEILMP 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F ALN E        +ANPRNAASG L+  N   +  R L+ +++ L     +   G
Sbjct: 178 WTSFEALNREREEREEPLFANPRNAASGTLKSKNSAVVAQRKLDAYLYYL-LGEHVPFDG 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ     GF ++ G+++  T  GI  + +     R  LP   DG+V KV+    Q+
Sbjct: 237 HYENLQAACSWGFKISGGMKKVTTLQGIYDFIDYWDVERKNLPVATDGIVLKVNSQRQQR 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA ++PV + G ++  ATL
Sbjct: 297 ALGYTAKSPRWAIAYKFQAERARTRLNAVTFQVGRTGTVTPVANMDPVQLAGTVVRRATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF-SFPS 432
           HN D ++ L           D+ +GD V V++ GE+IPK+V + ++ R  +  P   F +
Sbjct: 357 HNADVMEQL-----------DLHIGDMVYVEKGGEIIPKIVGVDIDARGAETGPRAEFIT 405

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +VR          AA  C    AC  Q   R++H++SR A NI+ LG + +D
Sbjct: 406 RCPECGAELVRYEGE------AAWYCPNDTACPPQIKGRIEHYISRRAMNIDSLGPETVD 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            +++       IR  AD++ ++  Q        N  G  + S   +  SI     +  ER
Sbjct: 460 DYYRR----GLIRDVADLYDIRVEQ-------INGDGTREKSAQKIVRSIADSVEVPFER 508

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGIR VG   A++LA+++ S            A ++     ++++  +G +IA+++
Sbjct: 509 VVFALGIRFVGEIAAKALARHFKSMD----------ALSSASLEDMLQINGIGVVIAESV 558

Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + ++ N  N   V  L ++            + S ++  + +V +G      R + +  +
Sbjct: 559 IRYFANEANHDLVRRLREKGVRMELSDEELSSHSDKLSGQSIVVSGVFSLHSRDEYKAMI 618

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            Q G      +S KT  ++ G N G +KLEKA +LG+ I++EE+FL  ++
Sbjct: 619 EQHGGKNVGSISSKTSFVLAGANMGPAKLEKAGKLGIPILSEEEFLKKIE 668


>gi|150025890|ref|YP_001296716.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86]
 gi|166215404|sp|A6H0N9|DNLJ_FLAPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149772431|emb|CAL43913.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86]
          Length = 666

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/704 (32%), Positives = 366/704 (51%), Gaps = 48/704 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++ SL +E++ H+  YY    P I D ++D       ++    P+     D N P  ++
Sbjct: 5   QKIQSLREELNLHNYNYYVLDNPTISDYDFDVKLTDLQSLEKNNPEYF---DENSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +  +   + H     SL+  ++ EDL  +  RI +      D  + +  E K DG  
Sbjct: 62  GGTITKNFETLKHDYRMYSLDNSYSKEDLLDWENRIQKALG---DVPLEYICELKYDGAS 118

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I+I YE G+ V A  RGDG  G+DV+  I+ I  +P  L  + PE  ++RGE+ +    F
Sbjct: 119 ISITYENGRLVRAVTRGDGFQGDDVTNNIKTIKAVPIKLKGDFPEKFDIRGEIILPFAGF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N ++I +G  PY+NPRN ASG L+  +  ++  R L+  ++ L   + +  +  +E 
Sbjct: 179 EKMNQDLIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYSLI-GNNLPFQSHFEG 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K R  GF V      A   + +  + N     R TLPY+ DG+V KV++  LQ +LG 
Sbjct: 238 LEKARLWGFKVPKQSHLAKNMNEVFDFINIWDKNRHTLPYETDGVVIKVNDLHLQDELGY 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +Q  T+L  I  Q+GRTG +TPVA LEPV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFKSEQVFTQLNSISYQVGRTGSITPVANLEPVQLAGTIVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+ L           DIR+ D V V++ GE+IPK++ + + +R  ++Q  ++ + CP C
Sbjct: 358 QIEKL-----------DIRINDTVFVEKGGEIIPKIIGVDLQKRPSNSQKTAYITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           Q+++ R          A H C     C  Q + R++H++SR A +IEGLG + +   + +
Sbjct: 407 QTKLERKEGE------ANHYCPNFYGCRPQIIGRIQHYISRKAMDIEGLGGETVALLYDN 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  AD++ L      S  +I  +      S  NL   +   +NI  E  +F+L
Sbjct: 461 ----GLVKNYADLYDL------SVEQILPLERMAQKSAENLVQGVQNSKNIPFENVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR+VG  +A+ LAK+Y +            A  N + L L+ V  +GD IAQ++VEF+ 
Sbjct: 511 GIRYVGETVAKKLAKHYKNID----------AIANANLLELVMVDEIGDKIAQSVVEFFD 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           N  NI  +E L           E N  VS+++  K  V +G  +   R + ++ +   G 
Sbjct: 561 NQENISVLERLKNNGIQLAISEENNTVVSNKLLGKIFVVSGVFEIYSRDELKKAIEDNGG 620

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            V + +S KT+ +I G N G +KLEKA QL V I++E  F  LL
Sbjct: 621 KVGSSISAKTNYVIAGQNMGPAKLEKANQLKVSIISESDFSALL 664


>gi|124006376|ref|ZP_01691210.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134]
 gi|123988033|gb|EAY27704.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134]
          Length = 691

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/712 (29%), Positives = 364/712 (51%), Gaps = 47/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++A++ +  L +++ +++  YYQ    ++ D ++D L      +   FP   +    
Sbjct: 1   MTNQEAQERIRELSKDLHHYNYMYYQKHVSVVTDYKFDKLLEELIDLEEKFPQFKKD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      + H    LSL   ++ +DL  F  R+ +     DD  I +  E
Sbjct: 58  DSPSQRVGGTITKDFPTIKHRYRMLSLGNTYSKDDLLDFDKRLKKLLG--DDKEIEYICE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            K DG  I++ YE GK V AA RGDG  G+DV+A  R I T+P  +  N  P   EVRGE
Sbjct: 116 LKFDGVSISLTYENGKLVTAATRGDGVQGDDVTANARTIRTVPISIQGNSFPANFEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           V++    F A+N + +  G+  YANPRN ASG ++  +  ++  R L+ +++ L     +
Sbjct: 176 VFMPNKVFEAINAQRVKEGKDLYANPRNTASGTMKLQDSAEVAKRKLDAYLYFL-LGDNL 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K   E ++ +   GF V+   ++      ++ Y N  +  R  LP D DG+V KV++ 
Sbjct: 235 PYKTHEEAIKAVESWGFHVSPTYKRCTGIDAVMEYVNHWEKERKNLPVDTDGVVIKVNDI 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+QLG  ++SPRW I++K+  +  ST L  I  Q+GRTG +TPVA L PV + G  + 
Sbjct: 295 DLQEQLGFTSKSPRWAIAYKYKAESVSTVLNSITYQVGRTGSVTPVAELTPVQLAGTTVK 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D I+              +   D V V++ GE+IPKV  + + +R  +AQ   
Sbjct: 355 RASLHNADEIES----------RLQLHENDTVFVEKGGEIIPKVTGVDLTKRAANAQAVK 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP C + +VR          A H C     C  Q   R++HF+ R+A +I+ +G +
Sbjct: 405 FIDHCPECGTALVRKDGE------ANHYCPNEKGCPPQIKGRIEHFIQRNALDIDSMGGE 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++  F+       ++  AD++ L  +Q  S  +      FG+ S  NL + + + ++IS
Sbjct: 459 TINQLFEK----GLVKNVADLYDLTLKQLLSLDR------FGEKSAHNLIEGLKQSKSIS 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ LGIR VG  +A+ LA ++ + +   +  ++ +          + V  +G  IA
Sbjct: 509 FARVLYGLGIRFVGKTVAQKLAVHFKTMEAIQKASHDEL----------VAVEDIGGRIA 558

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +++E +++  N+  +  L              +  S +++ K  V +GT Q+  R + +
Sbjct: 559 DSLIEHFKDTENLDVINRLKAAGLQFEDNTPVLQKDSDKLDGKTFVVSGTFQQFSRDEIK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + +   G  V + +S+K D +I GD  G SKL+KA++L V +++E++F+ ++
Sbjct: 619 QKIEANGGKVVSSISKKLDYLIAGDKMGPSKLDKAKKLDVTMISEDEFVQMV 670


>gi|297202535|ref|ZP_06919932.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
 gi|197709937|gb|EDY53971.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
          Length = 730

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/745 (29%), Positives = 363/745 (48%), Gaps = 62/745 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E     +AR++ + L ++I  H   YY    P++ D+++D L R  +A+   +P+L    
Sbjct: 8   ETTVPSEAREKHAQLAEQIEEHRFRYYVNDAPVVSDADFDKLLRSLEALEDEYPEL---R 64

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  K+ G        V H    LSL+  ++ E+L  +  R+ +     D +     
Sbjct: 65  TPDSPTQKVAGAYETEFTSVQHRSRMLSLDNAFSDEELAAWAERVAKDVGTTDYH---LL 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            E K+DG  + + YE G+   AA RGDG +GED++  +R I  IP  L+ + +P+++E+R
Sbjct: 122 CELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGDKVPDLVEIR 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY     F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G   
Sbjct: 182 GEVYFPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGALE 241

Query: 248 EIFAKGQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                 +  +    ++  G P     +  +   G+  +       R ++ ++IDG V K+
Sbjct: 242 GFDGMTRLSQGYDLLKSWGLPTAKHNKVVDGLDGVREFIAYFGENRHSVEHEIDGAVVKL 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           DE  LQ +LG  +R+PRW I++K+A ++ +T+L++I + +GRTG +TP A++EPV + G+
Sbjct: 302 DEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAGS 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    +
Sbjct: 362 EVEFATLHNQDVVKL-----------KGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSER 410

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P+ CP C + +         +     RC     C AQ  ERL +   R + +IE  
Sbjct: 411 EFVMPAECPECGTAL-----RPMKEGDVDLRCPNARTCPAQLRERLFYLAGRKSLDIEHF 465

Query: 487 GKQQLDFFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTK-- 523
           G        +  +P+   +    D+F L                    +R  +T   K  
Sbjct: 466 GYVAAAALTQPLEPSDPPLTDEGDLFDLTIEQLLPIKAYVLDQDSGLPKRDPKTGEEKVA 525

Query: 524 --IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
               N  G    +   + ++I   ++  L R +  L IRHVG   A +LA+ + S     
Sbjct: 526 TVFANQQGEPKKNAVAMLENIAAAKDRPLARVLTGLSIRHVGPVAAEALARNFRSIDRIE 585

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRH 639
           Q     +A+             VG IIA+++ E++    +   +             G  
Sbjct: 586 QASEEELANT----------DGVGSIIAKSLKEWFAEDWHQEILRKWKAAGVRMEEEGSG 635

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           E      +E   +V TGTL++  R  A+E +   GA V+  +S+KT  ++VGDNPGSK +
Sbjct: 636 EDEGPRPLEGLTVVVTGTLERFTRDGAKEALQSKGAKVTGSVSKKTSFVVVGDNPGSKYD 695

Query: 700 KAQQLGVKIMNEEQFLFLLQQYNTT 724
           KA QL V ++NE+ F  LL+Q    
Sbjct: 696 KAMQLKVPVLNEDGFDVLLEQGPEA 720


>gi|270307958|ref|YP_003330016.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS]
 gi|270153850|gb|ACZ61688.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS]
          Length = 680

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/716 (33%), Positives = 369/716 (51%), Gaps = 57/716 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + E+ +L +EI+ H+  YY    P I DSEYDAL RR   +  A P+L     PN P  +
Sbjct: 8   QTEIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELV---TPNSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G E   +   V H  P LSL   ++  +L  +  R+ +      + +     EPK+DG 
Sbjct: 65  VGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYLRVKKLLG---NAAFQIDCEPKMDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y  GKF   A RGDG  GE+++  +R I +IP     + P + E+RGEVY+ K  
Sbjct: 122 AVALTYRNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVYLPKEG 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQY 255
           F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++ LG   + +     +
Sbjct: 182 FAKLNCERADKGLSLFANPRNAAAGSLRQLDPLVTAERPLDIFIYALGYAEDSLLPDSHW 241

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L+    LGF +N   R  NT      YY EM   R +LPY+ DG+V+KVD  SLQK+L
Sbjct: 242 QILEYFSRLGFRINPRNRLVNTLAEAKEYYREMTENRDSLPYEADGVVFKVDSVSLQKKL 301

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G+  R PRW I++KF  +Q +T L  I I +GRTG L P A LEPVN+GG ++  A+LHN
Sbjct: 302 GDAGREPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLHN 361

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF-- 433
           ED I             +DIR GD V+++RAGEVIP+VV  ++ +R P+++PFS      
Sbjct: 362 EDDI-----------LRKDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETLF 410

Query: 434 --------CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                   CP+C   + R          A H C   ++C AQ   +L+HFVSR A +I G
Sbjct: 411 NPKLSRPACPVCGGEIYRPAGE------AMHYCAN-VSCPAQFERQLEHFVSRGAMDIRG 463

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G+       +       ++  +D++ L             +   G+ S  N+  +I+  
Sbjct: 464 IGESLSVILAQE----GLVKNVSDLYYLTAADLL------KLPRMGEKSADNIIKAISDS 513

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++  L+R IF LGIRHVG E A  L+  Y           +I A        L  +P +G
Sbjct: 514 KSRPLDRVIFGLGIRHVGNETAALLSSRYG----------DIWALAGAGLDKLQTIPDIG 563

Query: 606 DIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
             IA +I  ++   +NI  +       V  +  +   + S  +   + V TG L+ + R 
Sbjct: 564 AKIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSHKSLPLSGVEFVVTGKLESLSRE 623

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + Q+ +  LG      +++ T  ++VG + GSKL KA+ +GVK ++E++ + +L+Q
Sbjct: 624 ETQQKIRSLGGTAKDNVTKATRYLVVGADAGSKLAKARSMGVKELSEQELINMLEQ 679


>gi|111225216|ref|YP_716010.1| DNA ligase [Frankia alni ACN14a]
 gi|122953782|sp|Q0RDH8|DNLJ_FRAAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|111152748|emb|CAJ64491.1| DNA ligase [Frankia alni ACN14a]
          Length = 771

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/722 (31%), Positives = 356/722 (49%), Gaps = 49/722 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P  A S+   R   + L +E+  H   YY    P + D+EYD L R   A+    P+L  
Sbjct: 51  PAVAASVAD-RARAAELARELDEHAYRYYVLDSPTVSDAEYDRLMRELTALEEHHPEL-- 107

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  K+ G  +     V H    LSL+ +++ ++   +  R  R  +        
Sbjct: 108 -RTPDSPTQKVAGSYSTLFTPVEHLERLLSLDNVFDDDEFHLWAARAARETEVDG----- 161

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186
           +  E KIDG  + + YE+G+ V AA RGDG +GED++  IR + ++P  L   ++PE++E
Sbjct: 162 WLCELKIDGLAVDLVYEEGRLVRAATRGDGRTGEDITPNIRTLASVPTRLRGASVPELLE 221

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV+     F  LN  ++A G KP+ANPRNAA+G LR+ +P    TR L+  VHGLG 
Sbjct: 222 VRGEVFFPTEKFAELNASLVAGGGKPFANPRNAAAGSLRQKDPRVTATRPLDMIVHGLGA 281

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                A  Q     +    G PV+       +   ++++ +     R  + ++IDG+V K
Sbjct: 282 QRGFDAASQSAAYARFAEFGLPVSTHFEVLASVGDVLAFIHRWGRARHDVEHEIDGVVVK 341

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD F+LQ++LG  +++PRW ++ K+  ++ +T+L DI + +GRTG +TP   LEPV + G
Sbjct: 342 VDAFALQRRLGSTSKAPRWAVAFKYPPEEVTTKLRDIRVNVGRTGRVTPFGELEPVLVAG 401

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN D +           G + + +GD V++++AG+VIP++V  +V+ R    
Sbjct: 402 STVGLATLHNVDEV-----------GRKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGTE 450

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P+ CP C + +VR             RC    AC AQ  E + H  SR+A +I+G
Sbjct: 451 RAFVMPTHCPECGTELVRPEGE------VDIRCPNTDACPAQLRELIFHLASRNALDIDG 504

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +      +++          DIF L           E + GFG   +  +   +   
Sbjct: 505 LGYETAIALLEADRVG----DIGDIFHLTP------ESFEGLRGFGQKKIDQILRGVEAA 554

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R+  L R +  L IRHVG   AR+LA+   S            A        L  V  VG
Sbjct: 555 RHRPLWRLLVGLSIRHVGPTAARALARELRSLD----------AIAAAPAEQLAAVEGVG 604

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             IA A+V+++ + R+   V  +    +             ++   +V TGTL    R  
Sbjct: 605 PKIASAVVDWFADARHRDIVARIAAGGASLADAGAAEGPRPLDGVAVVITGTLDGWSRDS 664

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           A E V   G  V+  +S+KT  ++VG +PG +K +KA+ LGV +++E  F  LL++    
Sbjct: 665 ATEAVQGRGGKVTGSVSKKTAFVVVGADPGAAKYDKARSLGVPVLDEAGFAVLLERGADA 724

Query: 725 LR 726
            R
Sbjct: 725 AR 726


>gi|291454298|ref|ZP_06593688.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
 gi|291357247|gb|EFE84149.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
          Length = 736

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/742 (28%), Positives = 344/742 (46%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
              AR+    L +++  H   YY   +P++ D+E+D   R    +   +P L     P+ 
Sbjct: 19  PADARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPL---RTPDS 75

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G+       V H    LSL+  ++ E+L  +  R+ +       +   F  E K
Sbjct: 76  PTQKVAGQYETEFTSVQHRERMLSLDNAFDDEELAAWAERVAKEVGAPGYH---FLCELK 132

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG  GED++  +R I  IP  L   ++P ++E+RGEV+
Sbjct: 133 VDGLAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTISDIPERLHGDDLPALVEIRGEVF 192

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               +F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 193 FPMEEFEKLNARLVEAGEKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREGFTI 252

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                    +R  G P     +      G+ ++       R ++ ++IDG+V K+DE  L
Sbjct: 253 DCLSHAYDLLRSWGLPTARHNKVVEGLDGVRAFITYYGDHRHSVEHEIDGVVVKLDEVPL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PRW I+ K+  ++ ++RL+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 313 QGRLGSTSRAPRWAIAWKYPPEEVNSRLIDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D ++            + + +GD V++++AG+VIP+++  + + R    +PF+ P
Sbjct: 373 TLHNQDVVRA-----------KGVLIGDTVVLRKAGDVIPEILGPVADLRDGTERPFTMP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC    +C AQ  ER+ +   R   +IE  G    
Sbjct: 422 AECPECSTPL-----KPMKEGDIDLRCPNARSCPAQLRERIYYLAGRKCLDIENFGYVAA 476

Query: 492 DFFFKSEDPAF-SIRIPADIFTLQRRQQ--------------------TSTTK----IEN 526
               +  +P+   +R   D+F L   Q                     T   K      N
Sbjct: 477 TALTQPLEPSEPPLRDEGDLFDLTVDQLLPIRSYVLDPDSGLPKRDPKTGEEKIVTFFAN 536

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + D I   +   L R +  L IRHVG   A++LA+ + S +        
Sbjct: 537 KQGEAKKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATEE 596

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVS 644
            +A              VG  IA ++  ++    +   V    +           E    
Sbjct: 597 ELAQT----------EGVGPTIAASLKSWFAEEWHREIVRKWREAGVRMEEESTGEDEGP 646

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q 
Sbjct: 647 RPLEGLTVVVTGTLEHHTRDNAKEALQNQGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQA 706

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
            V +++E  F  LL Q     R
Sbjct: 707 KVPVLDEAGFAVLLDQGPDAAR 728


>gi|296140594|ref|YP_003647837.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
 gi|296028728|gb|ADG79498.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
          Length = 688

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/717 (32%), Positives = 358/717 (49%), Gaps = 43/717 (5%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R+    L +E+  H   YY    P++ D E+DAL +R  A+  AFP+LA    P+ P
Sbjct: 7   EDDRRAWQELAEEVRGHQFRYYVQDAPVLSDGEFDALLKRLQAMEDAFPELAV---PDSP 63

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG  +     V H     SL+ +++  +LR++I R+ R        S+ F  E KI
Sbjct: 64  TKLVGGGFSTEFTAVDHLERMYSLDNVFDEGELREWIARVQRDVG----ESVTFLTELKI 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGE 190
           DG  + + YE G  V  A RGDG +GEDV+   R +  +P  L+      IP ++EVRGE
Sbjct: 120 DGVALNLVYEDGALVRGATRGDGRTGEDVTLNARTLRDVPHRLTPSDEFPIPAVLEVRGE 179

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249
           V+    DF  LN  ++A G+ P+ANPRN+A+G LR+ NP   +R  L    HGLG+    
Sbjct: 180 VFFRLADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPQITSRRKLGMICHGLGRIEGG 239

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +     +E  + +   G PV+   +Q      +V         R    ++IDGLV KVDE
Sbjct: 240 WSPASLHEAYRALAAWGLPVSAHTKQVVGADAVVDRVFYWGEHRHDPEHEIDGLVVKVDE 299

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A + PV + G+ +
Sbjct: 300 IALQRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVNVGRTGRVTPYAYMAPVTVAGSTV 359

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN   ++            + + +GD V +++AG+VIP+V+  +V+ R    + F
Sbjct: 360 EFATLHNASEVQR-----------KGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGTEKAF 408

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C + +       + +  A  RC     C AQ  ERL +   R  F+IEGLG 
Sbjct: 409 VMPVTCPECGAAL-----APSKEGDADIRCPNTETCPAQLRERLFYLAGRTCFDIEGLGY 463

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +       S      +    D+F+L     T      N  G    +   L  +++  +  
Sbjct: 464 EAATALTASP----VLHNEGDVFSLTEADLTQVPLFTNDGGALSANAQRLLTNLDVAKTK 519

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R + +L IRHVG   AR+LA+   S +  A            D   L  V  VG +I
Sbjct: 520 PLWRVLVALSIRHVGPSAARALAQELGSLEAIAAA----------DVDQLAEVDGVGRVI 569

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+A+VE++    +   VE             + +V   +E   +V TG+LQ   R  A+E
Sbjct: 570 AEAVVEWFTVGWHREIVEKWRAAGVTMEDERDASVPRNLEGLSIVVTGSLQNFSRDGAKE 629

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            +   G   ++ +S+KT  ++VGD PGSK +KA+QLGV +++E  F  LL +     
Sbjct: 630 AILVRGGKAASSVSKKTAFVVVGDAPGSKADKAEQLGVPVLDEAGFEKLLAEGPEAF 686


>gi|188995252|ref|YP_001929504.1| DNA ligase [Porphyromonas gingivalis ATCC 33277]
 gi|254781390|sp|B2RKL2|DNLJ_PORG3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188594932|dbj|BAG33907.1| DNA ligase [Porphyromonas gingivalis ATCC 33277]
          Length = 669

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/705 (31%), Positives = 358/705 (50%), Gaps = 49/705 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L + +  H+  YY  S P I D EYDA+ ++ + +   +P+    + P+ P +++G
Sbjct: 10  RIEELRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEW---DSPDSPTHRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +       V H  P LSL   +N +++  F  R+    Q           E K DG  I
Sbjct: 67  SDKTEGFASVRHDRPMLSLSNTYNYDEIGDFYRRVSEGLQ---GAPFEIVAELKFDGLSI 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE G  V A  RGDG  G+DV+A +R I ++P  L   + P ++EVRGE+ +   +F
Sbjct: 124 SLIYEDGMLVRAVTRGDGIMGDDVTANVRTIRSVPLRLRGDDYPRMLEVRGEILLPFKEF 183

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N +  A G   +ANPRNAASG +++L+P  +  R L+ + + L  + E  A+  Y+ 
Sbjct: 184 DRINAQREAEGEPLFANPRNAASGTIKQLDPHIVAGRNLDAYFYYL-YSDEPLAENHYDR 242

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L + R  GF V++ V    +   + ++ +   + R TLP   DG+V KV+  + Q  LG 
Sbjct: 243 LMQARQWGFKVSDAVTLCCSKEDVYAFIDRFDTERLTLPVATDGIVLKVNAPAQQDLLGF 302

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++K+  ++  TRL  +  Q+GRTG +TPVA L+PV I G ++  A+LHN D
Sbjct: 303 TAKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVANLDPVLISGTVVRRASLHNAD 362

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           +I             +D+  GD V V++ GE+IPK+V +  + R  D +P  F   CP C
Sbjct: 363 FI-----------AEKDLHEGDFVYVEKGGEIIPKIVGVDTDARSIDGRPIVFTVLCPDC 411

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            + +VR+         AA+ C     C  QQ  RL+H+  R A +I  +G + ++  +  
Sbjct: 412 ATPLVREQGE------AAYYCPNAEGCPQQQKGRLEHYCGRKAADI-NIGPETIELLYSR 464

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD + L   Q  +        GF   +   L DSI   +    +  +F L
Sbjct: 465 NM----IRNVADFYALTEEQLLTL------PGFKKRAAAKLLDSIEASKARPYQAILFGL 514

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ LA  Y S    A   +  +          +++  +G+ IA A++ F+ 
Sbjct: 515 GIRFVGETVAKKLAAVYPSIDALAAATSEEL----------VQIDEIGERIAAAVLHFFS 564

Query: 618 NPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             +N   +E L    VS         VS+ +  K +V +GT +K  R + +  V   G  
Sbjct: 565 LRQNRELIERLRLAGVSLEAETVSVPVSARLAGKTVVISGTFEKYSRDEYKAMVEDNGGR 624

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++  +S KT  I+ G + G SK EKA++LGV++M+EE+FL L+++
Sbjct: 625 MAGSVSSKTSFILAGSDMGPSKREKAEKLGVRLMSEEEFLRLIEE 669


>gi|299139723|ref|ZP_07032896.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8]
 gi|298598347|gb|EFI54512.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8]
          Length = 723

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/762 (31%), Positives = 368/762 (48%), Gaps = 92/762 (12%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P  ALS +Q   ++ +L +++ +H+  YY    P + D++YDA       +    P+L 
Sbjct: 4   TPSNALSPDQ---QIEALREDLRHHEHLYYVLDAPELTDAQYDARMNELRRLETEHPELV 60

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  ++GG+      KV HS P LSL+  +N  +LR +  R+       +   +
Sbjct: 61  ---TPDSPTQRVGGKPKEGFAKVAHSRPMLSLDNAYNEAELRAWAERVVSGLPSGEV--V 115

Query: 127 FFTLEPKIDGTMITIRYE-----KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---- 177
            F  E K+DG  + ++Y+     +        RG+G  GEDV+  +R I ++P  +    
Sbjct: 116 RFVCELKLDGLSLALQYDAGAKHEAVLKTGVTRGNGTIGEDVTTNVRTIRSVPLHIQAAK 175

Query: 178 --SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-R 234
                +P+  EVRGEV + +  F  +N E  A G  P ANPRNAA+G +R L P  +  R
Sbjct: 176 LAKAGLPQQFEVRGEVVLPQKAFEKMNAEREAAGLAPAANPRNAAAGTIRTLEPNIVAQR 235

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L FF + L +  E     Q   LQ +R  GF VN   R   +   ++++ NE + +R  
Sbjct: 236 RLEFFAYFLLREGEPLLAEQSSALQALREAGFLVNKHARTVGSIDEVLAFINEAEPLRDG 295

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPY+IDG+V KVD  + Q++LG   ++PRW I++KF  + A TRL D+  Q+GRTG +TP
Sbjct: 296 LPYEIDGVVIKVDAIAQQRRLGFTGKAPRWAIAYKFPARAAVTRLDDVLFQVGRTGKVTP 355

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L PV IGG  +T ATLHN D I  L            +RVGD V V+R G+VIPK+ 
Sbjct: 356 VAALAPVFIGGTTVTRATLHNADEIARL-----------GVRVGDFVSVERGGDVIPKIT 404

Query: 415 DIIVN-ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           +++ + +         FPS CP+C S +VR             RC   + C A+  E L 
Sbjct: 405 EVVEDAKHPRGTSEIIFPSHCPVCGSELVRAEGE------VDWRCINAV-CPARVREELL 457

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSED---------------------------------- 499
           H+ +R   NIEGLG+  +       +                                  
Sbjct: 458 HWAARGVMNIEGLGESMVAQLLGQAEEDSESAEGRSGLQPGLSESVSDEGLQTGLAEPIK 517

Query: 500 --PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD+++L R Q  +  +       G+ +   L   I + +   L R +F L
Sbjct: 518 TSHEPLIRSIADLYSLTREQLLTLER------VGEKTADALLAEIERSKQAPLARVLFGL 571

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG   A  LA+++ S  +  +     +   N+          VG  +AQAIVEF+ 
Sbjct: 572 GIRFVGERTASLLAEHFGSLDDLMKASAEDLEAVNE----------VGPRVAQAIVEFFA 621

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +N   VE L + V  +    ++ V +       V TGTL  + R +A++ +   G  V
Sbjct: 622 EEKNRELVEKL-RTVGLTFTAEKRVVGTTFAGLTFVLTGTLPTLTRDEAKQRIEDAGGKV 680

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S  +S+KT  ++ G++ GSKLEKAQQLGV +++E   L L+ 
Sbjct: 681 SGSVSKKTSYVVAGEDAGSKLEKAQQLGVAVLDEAGLLALIA 722


>gi|289644234|ref|ZP_06476323.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata]
 gi|289505957|gb|EFD26967.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata]
          Length = 713

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/701 (31%), Positives = 340/701 (48%), Gaps = 48/701 (6%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
            H   YY    P + D+EYD L      +   +P L     P+ P  K+ G ++     V
Sbjct: 41  EHAFRYYVLDSPTVSDAEYDQLMAELTQLETRYPGL---RTPDSPTQKVAGTISTLFTPV 97

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H    LSL+ ++   +   +  R+ R  +        +  E KIDG  + + YE G   
Sbjct: 98  EHLERLLSLDNVFTEVEFEAWAARVTREAEVD-----AWLCELKIDGLAVDLVYEDGYLA 152

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAV 208
            AA RGDG +GEDV+  IR +  +P  L    +PE++EVRGEV+     F  LN  ++A 
Sbjct: 153 RAATRGDGRTGEDVTPNIRTLAAVPGRLRGGSVPELLEVRGEVFFPTAAFTELNATLVAA 212

Query: 209 GRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
           G KP+ANPRNAA+G LR+ +P     R L+  +HGLG         Q +  Q+M  LG P
Sbjct: 213 GDKPFANPRNAAAGSLRQKDPRVTAGRPLSMIMHGLGAHRGFDVTSQSDAYQRMAELGLP 272

Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
           V+       +   + ++       R  + ++IDG+V KVD F LQ++LG  ++SPRW ++
Sbjct: 273 VSRHHEVLASVAEVEAFVRRWGEHRHDVEHEIDGVVVKVDAFGLQRRLGATSKSPRWAVA 332

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           +K+  ++ +TRLL I++ +GRTG +TP  RLEPV + G+ +  ATLHN D ++       
Sbjct: 333 YKYPPEEVTTRLLGIEVNVGRTGRVTPFGRLEPVRVAGSTVALATLHNADQVER------ 386

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                + + +GD V++++AG+VIP++V  +V+ R    + F  P+ CP C + +VR    
Sbjct: 387 -----KGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSERAFVMPTHCPECGTELVRPEGE 441

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                    RC   ++C AQ  E L HF SR A +I+G G +      +    A  +R  
Sbjct: 442 ------VDVRCPNTVSCPAQLRESLFHFASRGALDIDGFGYETATALLE----AGRVRDV 491

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
            D+F L             + GF    +  +   +   R   L R +  L IRHVG   A
Sbjct: 492 GDVFHLTA------ESFAELRGFAKKKIDQILRGVEAARQQPLWRLLVGLSIRHVGPSAA 545

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           R+LA+   S    A      +A           V  VG  IA ++V+++ +PR+   +E 
Sbjct: 546 RALAREMRSVDAIAAASTETLAA----------VDGVGPTIAASVVDWFADPRHQDILER 595

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           +    +        +    +    +V TGTL    R  A E V   G  V+A +S+KT  
Sbjct: 596 IRSGGARFADAGADDGPGPLTGVTVVITGTLAGWSRDSATEAVQARGGKVTASVSKKTAF 655

Query: 688 IIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
           ++VG +PG SK +KA+   + I++E  F  LL+Q       
Sbjct: 656 VVVGADPGASKYDKARAWKLSILDEAGFAVLLEQGPQAATP 696


>gi|317132010|ref|YP_004091324.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3]
 gi|315469989|gb|ADU26593.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3]
          Length = 661

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/704 (31%), Positives = 353/704 (50%), Gaps = 52/704 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A      L + +S H+  YY    P I D EYD + R  + +  A P++     P+ P 
Sbjct: 2   DAAARAKELRKALSRHNYLYYVLDAPEIEDFEYDRMLRELEELEAAHPEIV---TPDSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE       V H +P  SL+ ++++E++R F  R++        +++ + +EPKID
Sbjct: 59  QRVGGEAVGQFEPVRHEVPMESLQDVFSVEEVRAFDERMHAAL-----STVRYAVEPKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  G FV  + RGDG +GEDV+A +R + +IP  LS  +P  +EVRGEV++  
Sbjct: 114 GLSVALEYRNGLFVRGSTRGDGVTGEDVTANLRTVRSIPLRLSRPLP-FLEVRGEVFMPV 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
             F AL         K + NPRNAA+G LR+ NP     R L+ FV  + +      +  
Sbjct: 173 AKFEALVRAQELREEKLFKNPRNAAAGSLRQKNPKITSARGLDIFVFNIQRIEGATVESH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
                 ++ LGF V       +T     +    +   R +LPY IDG V KVD+F+ ++ 
Sbjct: 233 LAGHALLKELGFKVVAHTA-CDTLEKTETEITRIGESRGSLPYGIDGAVVKVDDFTARRM 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+ PRW ++ KF  ++  T LL IDI +GRTG LTP A LEPV + G+ +  A+LH
Sbjct: 292 LGSTAKFPRWAVAFKFPPEEKRTGLLSIDINVGRTGALTPTAVLEPVLLAGSTVARASLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED+I+            +DIR+GD V+V++AG++IP++V +     H   +P+  P+ C
Sbjct: 352 NEDFIR-----------EKDIRIGDTVVVRKAGDIIPEIVSVAE---HGGGKPYRMPTAC 397

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + V R+ +       A  RC     C AQ L  L HF SRDA +IEG+G   ++  
Sbjct: 398 PSCGAPVAREKDE------AVLRCQNP-DCPAQLLRHLIHFASRDAMDIEGMGPALVESL 450

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    +R  AD++ L          +  +   G  S  NL  +I   +   L R +
Sbjct: 451 VGE----GLVRSIADVYDLNA------EAVAKLERMGKKSAENLIAAIETSKRAGLARLL 500

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LG+R VG + A  +A  + S +       + +            +  +G IIA+ +V 
Sbjct: 501 YALGVRQVGQKAAGLIAARFGSMERLFSATEDEL----------CAIDEIGGIIAENVVR 550

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+        VE L         R ++   + +  +  V TGTL K  R +A++ +  LG
Sbjct: 551 FFALEDTARLVERLRAAGVDLTAREQEVADTRLSGQIFVLTGTLSKYSREEAKKRIEALG 610

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             V+  +S+KT  ++ G+  GSKL+KA  LGV +++E  F  LL
Sbjct: 611 GKVTGSVSKKTSYVVAGEEAGSKLDKALALGVPVLDEAAFEQLL 654


>gi|116669859|ref|YP_830792.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24]
 gi|166215392|sp|A0JUH2|DNLJ_ARTS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116609968|gb|ABK02692.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24]
          Length = 790

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/738 (29%), Positives = 368/738 (49%), Gaps = 61/738 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R+E  +L +E+  H   YYQ   PII D+E+D L RR + I    P+L  +   + P  
Sbjct: 51  VREEYENLVEEVRKHRFAYYQEDAPIISDAEFDELFRRLETIEAMHPELVAN---DSPTQ 107

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI--FFTLEPKI 134
           ++GGE++ +   V H     SLE ++++E+L  +I +      K  + +    +  E KI
Sbjct: 108 EVGGEVSAAFAAVEHLQRMYSLEDVFSLEELESWIAKAEASVAKLGNGTAGPAWLTELKI 167

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  + + Y  GK V AA RGDG++GED++  +  I  IP+ L   N P  +EVRGEV+I
Sbjct: 168 DGLAVNLLYRDGKLVRAATRGDGYTGEDITHNVLTIKEIPQQLTGGNYPAEMEVRGEVFI 227

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
               F   N+ +I  G+ P ANPRNAA+G LR+ +P +   R L  +VHG+G    +   
Sbjct: 228 PSKAFAEYNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPLRMYVHGIGAREGLRTV 287

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q +  +++   G P +       +   I+ +       R +L ++IDG+V KVD+F+ Q
Sbjct: 288 SQSDTYRQLAEWGLPTSPYFEVLGSLKDILDFIKRYGDKRHSLTHEIDGIVVKVDDFATQ 347

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  +R PRW +++K+  ++  T+LLDI + +GRTG +TP   +EPV + G+ +  AT
Sbjct: 348 RALGYTSRVPRWAVAYKYPPEEVHTKLLDIAVNVGRTGRVTPFGIMEPVKVAGSTVGMAT 407

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP---FS 429
           LHN+D +K            + +++GD V++++AG+VIP++V  ++  R     P   F 
Sbjct: 408 LHNQDVVKA-----------KGVKIGDIVVLRKAGDVIPEIVGPVLALRDQQDPPVRDFV 456

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C AQ  ER+ H  SR AF+IE LG +
Sbjct: 457 MPTECPACGTPL-----APGKEGDVDIRCPNSRSCPAQLRERVFHVASRGAFDIEALGWE 511

Query: 490 QLDFFFKSEDPAF-SIRIPADIFTLQRRQQTS-------------TTKIENILGFGDV-- 533
                 +  +P    +   A++F L R                  T + E +  F     
Sbjct: 512 AAIALTQPAEPVTPPLTSEANLFRLTREDLADVRIRREKRSKGVATGEFELVPYFYTKGT 571

Query: 534 ---------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
                    +   L+  + K ++  L R + +L IRHVG   +R+LA  + S     +  
Sbjct: 572 AKSPSKPTATTEKLFTELEKAKSQPLWRVLVALSIRHVGPRASRALATAFGSMDAIREAS 631

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +AH          V  VG +IA A+ E++    +   V+   ++        +++  
Sbjct: 632 EEELAH----------VDGVGPVIAAALKEWFAEDWHREIVDTWAEDGVRMEDEQDESTP 681

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TG+L+   R +A+E +   G   S  +S+ T  ++ G+N G+KL+KA+QL
Sbjct: 682 RTLEGLTVVVTGSLEGFSRDEAKEAILIRGGKASGSVSKNTSYVVAGENAGTKLDKAEQL 741

Query: 705 GVKIMNEEQFLFLLQQYN 722
           GV +++E+ F  LL    
Sbjct: 742 GVPVLDEDGFRALLANGP 759


>gi|7674018|sp|Q9ZFY8|DNLJ_THESK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4235370|gb|AAD13188.1| NAD-dependent DNA ligase [Thermus sp. AK16D]
          Length = 674

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/712 (32%), Positives = 385/712 (54%), Gaps = 52/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+AR+ ++ L   I YH+  YY    P I D+EYD L R    +   FP+L   + P
Sbjct: 1   MTLEEARRRVNELRDLIRYHNYLYYVLDAPEISDAEYDRLLRELKELEERFPEL---KSP 57

Query: 72  NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G     +    V H     SL+  ++++++R F  RI R   +K      +T+
Sbjct: 58  DSPTEQVGARPLEATFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK--GPFLYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  IPTIPR L+  +P+ +EVRGE
Sbjct: 116 ERKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIPTIPRRLT-GVPDRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKT-SE 248
           VY+    FL LN E+   G + + NPRNAA+G LR+ +P    R  L    + LG    E
Sbjct: 175 VYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATFYALGLGLEE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q+++L  +R  GFPV +G  +A    G+   Y      R  LP++ DG+V K+D+
Sbjct: 235 TGLKSQHDLLLWLRERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEADGVVVKLDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +L ++LG  AR+PR+ +++KF  ++  TRLL +  Q+GRTG +TPV  LEPV I G+ +
Sbjct: 295 LALWRELGYTARTPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLEPVFIEGSEV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE +I+ L           D+R+GD VLV +AG VIP+V+ ++   R  + +P 
Sbjct: 355 SRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKERRTGEEKPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C   ++++           HRC   L C A++ E ++H+ SR A +I+GLG+
Sbjct: 404 IWPENCPECGHALIKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIQGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       +R  AD++ L++    +  ++      G+ S  NL   I + +  
Sbjct: 455 KLIEKLLEK----GLVRDVADLYRLKKEDLVNLERM------GEKSAENLLRQIEESKGR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +++LG+  VG  +AR+LA  +       +               L+ V  VG++ 
Sbjct: 505 GLERLLYALGLPGVGEVLARNLALRFGHMDRLLEA----------GLEDLLEVEGVGELT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+AI+   ++P     V  L +       +  +     ++    V TG L +  R + + 
Sbjct: 555 ARAILNTLKDPEFRDLVRRLKEAGVEMEAKERE--GEALKGLTFVITGELSRP-REEVKA 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  ++EE+   L+++
Sbjct: 612 LLRRLGAKVTDSVSRKTSFLVVGENPGSKLEKARALGVPTLSEEELYRLIEE 663


>gi|29829290|ref|NP_823924.1| NAD-dependent DNA ligase LigA [Streptomyces avermitilis MA-4680]
 gi|81719851|sp|Q82JK7|DNLJ_STRAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29606397|dbj|BAC70459.1| putative DNA ligase [Streptomyces avermitilis MA-4680]
          Length = 730

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/740 (29%), Positives = 354/740 (47%), Gaps = 61/740 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR++ + L ++I  H   YY    P++ D+E+D L R  +A+   +P+L     P+ 
Sbjct: 13  PAEAREKHAQLAEQIEEHRFRYYVKDAPVVSDAEFDTLLRSLEALEEEYPEL---RTPDS 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  ++   L  +  R+ +     D +   F  E K
Sbjct: 70  PTQKVAGGYETEFTAVQHRERMLSLDNAFDDLGLAAWAERVAKDVGTSDYH---FLCELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L  + IP+++E+RGEVY
Sbjct: 127 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPDLVEIRGEVY 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 187 FPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGARQGFDI 246

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               +  + +R  G P     R  +   G+  +       R ++ ++IDG+V K+DE  L
Sbjct: 247 DRLSQAYELLREWGLPTTRYARVVDDLDGVREFIAYYGENRHSVEHEIDGVVVKLDEIPL 306

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  A
Sbjct: 307 QGRLGSTSRAPRWAIAWKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 366

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    + F  P
Sbjct: 367 TLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTERAFVMP 415

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC     C AQ  ERL +   R + +IE  G    
Sbjct: 416 AECPECGTPL-----APAKEGDVDLRCPNARTCPAQLRERLFYLAGRKSLDIEQFGYVAA 470

Query: 492 DFFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTK----IEN 526
               K  +PA   +    D+F L                    +R  +T   K      N
Sbjct: 471 AALTKPLEPAEPPLLDEGDLFDLTIERLLPIKAYVLDQDSGLPKRDPKTGEEKVATVFAN 530

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +  ++ D+I   +   L R +  L IRHVG   A +LA+ + S     Q    
Sbjct: 531 QQGEPRKNAISMLDNIAAAKERPLARILTGLSIRHVGPVAAEALARAFRSIDRIDQATEE 590

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVS 644
            +               VG I+A A+ +++    +   +                E    
Sbjct: 591 ELKDT----------DGVGPIVAAAVKQWFAEDWHREIIRKWKAAGVRMEDERSGEDEGP 640

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 641 RPLEGLTVVVTGTLEHHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQL 700

Query: 705 GVKIMNEEQFLFLLQQYNTT 724
            V ++NE  F  LL+Q    
Sbjct: 701 KVPVLNEAGFAVLLEQGPEA 720


>gi|288919113|ref|ZP_06413452.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f]
 gi|288349457|gb|EFC83695.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f]
          Length = 715

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/724 (30%), Positives = 349/724 (48%), Gaps = 48/724 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +P         R   + L +++  H   YY    P I D+EYDAL R  D I   +P+L 
Sbjct: 28  VPEAEAPDAAVRARAAELARDLEEHAHRYYVLDAPTIADAEYDALLRELDQIEQQYPELR 87

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
            +   + P  K+ G  +     VTH    LSL+ +++ +    +  R  R    +     
Sbjct: 88  TA---DSPTQKVAGSYSTLFTPVTHLERLLSLDNVFDEDGFHAWAARAAREQPVE----- 139

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEII 185
            +  E KIDG  + + YE G  V AA RGDG +GED++  +R + ++P  L    +PE++
Sbjct: 140 AWLCELKIDGLAVDLVYEAGALVSAATRGDGRTGEDITLNVRTLRSVPARLRGPGVPELL 199

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEVY     F  LN  ++  G+ P+ANPRNAA+G LR+ +P     R L   VHGLG
Sbjct: 200 EVRGEVYFPTAGFAELNASLVEAGKAPFANPRNAAAGSLRQKDPRVTAGRPLAMIVHGLG 259

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  + Q    +++  LG PV+   +       ++++       R  + ++IDG+V 
Sbjct: 260 ANRGFEVESQSAAYERLAELGLPVSTRYQVCAGVDEVLAFVRAWGEQRHDVEHEIDGVVI 319

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD F+ Q++LG  +++PRW ++ K+  ++ +TRL DI + +GRTG +TP   LEPV + 
Sbjct: 320 KVDGFAQQRRLGATSKAPRWAVAFKYPPEEVTTRLRDIQVNVGRTGRVTPFGVLEPVKVA 379

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ +  ATLHN D +           G + + +GD V++++AG+VIP++V  +V+ R   
Sbjct: 380 GSTVGMATLHNIDEV-----------GRKGVLIGDVVVLRKAGDVIPEIVSPVVDLRDGS 428

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            + F  P+ CP C + +VR             RC   ++C AQ  E + H  SR A +I+
Sbjct: 429 ERAFVMPTHCPECGTELVRPEGE------VDIRCPNTVSCPAQLRESVFHLASRGALDID 482

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +              IR   DIF L      +    E + GF    V  +   I  
Sbjct: 483 GLGYETATVLLAEGR----IRDIGDIFHL------APESFEGLRGFASKKVDQILRGIEA 532

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R+  L R +  L IRHVG   AR+LA+   S            A        L  V  V
Sbjct: 533 ARDRPLWRLLVGLSIRHVGPTAARALARELRSLD----------AIAAAPAERLAAVDGV 582

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G  IA+A+V+++ +PR+   V  +    +             ++   +V TGTLQ   R 
Sbjct: 583 GPKIAEAVVDWFADPRHRDVVARIAAGGARLADEGAGEGPGLLDGVVVVITGTLQGWSRD 642

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            A E V   G  V+  +S+KT  ++ G +PG SK +KA  L + +++E  F  LL     
Sbjct: 643 TATEAVQARGGKVTGSVSKKTTFVVAGVDPGASKYQKALSLRIPLLDETGFAALLGDGAD 702

Query: 724 TLRI 727
             R+
Sbjct: 703 AARV 706


>gi|256380031|ref|YP_003103691.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
 gi|255924334|gb|ACU39845.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
          Length = 816

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/715 (32%), Positives = 353/715 (49%), Gaps = 42/715 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
              AR    +L +E+  H   YY    P I D E+DAL R   ++  A P LA    P+ 
Sbjct: 43  PADARDRHRALAEEVRGHQFRYYVLDAPTISDGEFDALLRELQSLEDAHPGLA---TPDS 99

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG  +     V H    LSL+  ++ + LR +  R+     K+  ++  +  E K
Sbjct: 100 PTQQVGGTFSTEFTAVDHLERMLSLDNAFDEDGLRAWFERV----GKEVGDAARYLCELK 155

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRG 189
           +DG  I +RYE+G+ V A  RGDG +GEDV+  +R +  +P VL+      +PE++EVRG
Sbjct: 156 VDGLAINLRYERGRLVRALTRGDGRTGEDVTLNLRTLRDVPEVLTGTDEWPVPELVEVRG 215

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY +  DFL LN +++  G  P+ANPRN A+G LR+ +P    +R L    HG+GK + 
Sbjct: 216 EVYFAVEDFLELNAKLVEAGLPPFANPRNTAAGSLRQKDPKVTASRRLRMVCHGIGKRAG 275

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q +    +R  G P +       TF  + +        R    ++IDGLV KVDE
Sbjct: 276 FELERQSDAYAALRAWGLPTSEHTAVVATFDEVWARVAHWGEHRHDAAHEIDGLVVKVDE 335

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++LG  +R+PRW I+ K+  ++A+T LLDI +Q+GRTG +TP A +EPV + G+ +
Sbjct: 336 VPLQRRLGSTSRAPRWAIAFKYPPEEATTTLLDIGVQVGRTGRVTPFAIMEPVKVAGSTV 395

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN   +K            + + +GDR+++++AG+VIP+V+  +V+ R  DA+ F
Sbjct: 396 ARATLHNASEVKR-----------KGVLIGDRIVIRKAGDVIPEVLGPVVDVRPADAREF 444

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +         +     RC     C AQ  ERL +  SR A ++E LG 
Sbjct: 445 VMPASCPECGHAL-----RPMKEGDVDIRCPNAEGCPAQLRERLAYLASRSALDVEVLGY 499

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +       SE         AD+F L            N  G    +   L +++   ++ 
Sbjct: 500 EGAAALASSEVYG----NEADLFDLTAEDLLRVDLFRNQDGALVTNGAKLLENLEAAKSQ 555

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R + +L IRHVG   AR+LA  +   Q         +A              VG  I
Sbjct: 556 PLWRVLVALSIRHVGPTAARALAVEFGGVQAILDAEEADLAAAG----------GVGPTI 605

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A A+ E+   P     V          +   +  +  ++E   +V TGTL    R +A++
Sbjct: 606 AAAVREWALTPWRQEVVRRWAAAGVRMVDERDTTIRRDLEGLSIVVTGTLADFSRDEAKD 665

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +   G      +S+KT  +IVGDNPGSK +KA QL V +++E  F  LL++   
Sbjct: 666 SILVRGGKAVGSVSKKTAFVIVGDNPGSKADKAAQLKVPVLDEAGFRVLLERGPE 720


>gi|320450863|ref|YP_004202959.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01]
 gi|320151032|gb|ADW22410.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01]
          Length = 674

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/712 (33%), Positives = 384/712 (53%), Gaps = 52/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK ++ L   I YH+  YY    P I D+EYD L R    +   FP+L   + P
Sbjct: 1   MTLEEARKRINELRDLIRYHNYRYYVLDAPEISDAEYDRLLRELKELEERFPEL---KSP 57

Query: 72  NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G +   +    + H     SL+  + +E++R F  RI R   +K      +T+
Sbjct: 58  DSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFTLEEVRTFEERIERALGRK--GPFVYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  IPTIPR L   +PE +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGILVWGATRGDGETGEEVTQNLLTIPTIPRRLK-GVPERLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKT-SE 248
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P    R  L    + LG    E
Sbjct: 175 VYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSLRQKDPRITARRGLRATFYALGLGLEE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q ++L  +R  GFPV +G  +A    G+   Y      R +LP++ DG+V K+DE
Sbjct: 235 SGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKLDE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SL ++LG  AR+PR+ I++KF  ++  TRLL +  Q+GRTG +TPV  LEPV I G+ +
Sbjct: 295 LSLWRELGYTARAPRFAIAYKFPAEEKETRLLQVVFQVGRTGRVTPVGILEPVFIEGSEV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE YI+ L           D+R+GD VLV +AG VIP+V+ ++  +R  + +P 
Sbjct: 355 SRVTLHNESYIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKEKRTGEERPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +I GLG+
Sbjct: 404 RWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIGGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       ++  AD++ L+        ++      G  S  NL   I + R+ 
Sbjct: 455 KLIEKLLEK----GLVKDVADLYRLKEEDLVGLERM------GKKSAGNLLRQIEESRSR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +++LG+  VG  +AR+LA ++ +     +               L++V  VG++ 
Sbjct: 505 GLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEASL----------EELLQVEEVGELT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ I E  Q+P     +  L +         ++     ++    V TG L +  R + + 
Sbjct: 555 ARGIYETLQDPAFRDLIRRLKEAGVEM--EAKERGEEALKGLTFVITGELSRP-REEVKA 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +LGA V+  +SRKT  ++VG+ PGSKLEKA+ LGV  + EE+   L+++
Sbjct: 612 LLRRLGAKVTDSVSRKTSYLVVGEAPGSKLEKARALGVPTLTEEELYRLIEE 663


>gi|330718928|ref|ZP_08313528.1| DNA ligase, NAD-dependent [Leuconostoc fallax KCTC 3537]
          Length = 681

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/722 (33%), Positives = 378/722 (52%), Gaps = 51/722 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +   +  L+  QA++E++ L+ +++ +   YY+   P + D  YDA   R   +  AFP 
Sbjct: 4   EFKAVSELTTAQAQQEIAKLQDDLTRYGVEYYEDDNPSVEDHVYDAFYARLVDLEAAFPQ 63

Query: 65  LARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                 P  P  ++GG  +   L K+TH +P LSL  ++++E+L+ +  R  +    + D
Sbjct: 64  FM---TPESPTQRVGGTNVKSELTKITHPVPMLSLGDVFSLEELQDWDARTTKALGFQSD 120

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  + + YE G+ V A+ RG+G  GEDV+A ++ I  IP+ LS   P 
Sbjct: 121 ----YNLELKIDGLAVALDYENGELVQASTRGNGTIGEDVTANVKTIQAIPQRLSE--PL 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
            IEVRGE+Y+ K  F  LN +    G  P+ANPRNAA+G LR+L+      R L+ FV+ 
Sbjct: 175 TIEVRGEIYMPKKSFAKLNQQRELEGLAPFANPRNAAAGSLRQLDAKVTKKRELSAFVYY 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                 + A+ Q   LQ+   LG P N   +  +    I SY       R TL Y IDG+
Sbjct: 235 TADFETLGAETQSGALQRFAALGLPTNTTNQVISVMSYISSYITHYTQQRDTLDYGIDGV 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+   LQ  LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV 
Sbjct: 295 VVKVNALDLQLDLGNTVKIPRWAIAYKFPPEEALTTVRDIEWTVGRTGAVTPTAVMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G ++  A+LHN DY+             + IR+GD V + +AG++IP+V  +I  +R 
Sbjct: 355 LAGTVVKRASLHNPDYLNA-----------KGIRIGDTVTLHKAGDIIPEVGQVIEEKRS 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D+ P+  P  CP CQS +V            A RC     CSAQ  ERL HF SR+A N
Sbjct: 404 IDSVPYVIPVMCPACQSELVHIEGE------VALRCINPF-CSAQIQERLTHFASRNAMN 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+G+G + +    K+      I+  A I+ L+  Q  S  K      F + S  NL+++I
Sbjct: 457 IDGMGPRVIAQLLKNN----LIQDVASIYALKEEQLLSLDK------FKEKSANNLFNAI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + +  SLER +F LGIR VGA+ A+ +AK +          +  IA           + 
Sbjct: 507 QQSKQNSLERLLFGLGIRMVGAKAAKLIAKKFKDLTQLMHTTSADIA----------SID 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQK 660
            +G  IA ++V+F+  P+    V+ L+        +   E + +S    KK+V TG L++
Sbjct: 557 GIGSTIADSMVQFFSTPQAQQLVQDLMAAGVNGKYLSDVEIDENSFFFGKKIVLTGKLEQ 616

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R    +++   GA V   +S KTD++I G + GSKL+KA  LG+ +  E+QF+   Q+
Sbjct: 617 MSRPVIAKWLENHGASVVGSVSAKTDLVIAGHSAGSKLDKATGLGIPVWQEQQFIDTKQE 676

Query: 721 YN 722
            +
Sbjct: 677 ED 678


>gi|325110927|ref|YP_004271995.1| DNA ligase [Planctomyces brasiliensis DSM 5305]
 gi|324971195|gb|ADY61973.1| DNA ligase [Planctomyces brasiliensis DSM 5305]
          Length = 675

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/711 (32%), Positives = 364/711 (51%), Gaps = 49/711 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             +E++SL  EI  H+  YY  ++P I D E+D L  R   +    P+    + P+ P  
Sbjct: 5   VAQEIASLRDEIERHNRLYYVEAQPEITDREFDRLLNRLIDLEQQHPEF---QSPDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+GG+       V H++P LS+E ++  E + +F  RI +   +    ++ +T+E KIDG
Sbjct: 62  KVGGQPIEGFQTVPHAVPMLSIENVFEPEGIDEFDRRICKLLDR---ETLDYTIEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             + + YE G+ + A  RGDG  G+D+++  R    +P  L   N PE++EVRGE YI+ 
Sbjct: 119 VALALVYEHGRLIRAVTRGDGQQGDDITSNARTARGVPLKLAGDNPPELLEVRGEAYIAN 178

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           +DF  L  E  A G   +ANPRN+ +G L+ L+P     R + F  HG+G  S       
Sbjct: 179 SDFAVLRAEQEARGETVFANPRNSTAGALKLLDPKLSAQRKVRFVSHGIGAHSNFGVDTH 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++ ++K+R  G P   G+R  +    +      M     TL  ++DGLV KV+  +L+++
Sbjct: 239 FDYIEKLREFGLPTTPGIRVCHGIQEVREQIEMMMDDLHTLDLEVDGLVIKVNSLALREE 298

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW+I++K+   +A+TR+ DI IQ+G+TG LTPVA L PV I G  +T ++LH
Sbjct: 299 LGNTSKSPRWVIAYKWERYEATTRVEDIQIQVGKTGTLTPVAYLAPVEIAGTTVTRSSLH 358

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D ++ L           DIR+GD  +V++AG++IP V+ +    R    Q F FP+ C
Sbjct: 359 NRDELQRL-----------DIRIGDYAVVEKAGKIIPHVLRVERERRDGSEQEFHFPTQC 407

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P CQ+ VV+D      +     RC     C A+  E L+ F SR A +I+GLG + ++  
Sbjct: 408 PECQTEVVQD------EGGVYIRCPNP-DCPARLRESLRFFASRQAMDIDGLGIKLIEQL 460

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                 A  +   ADI+ L  R+         +   G+ SV  +   I + +   L R +
Sbjct: 461 VD----AGLLTSLADIYRLPERRDEMLA----LDRMGEKSVDKVLKGIERSKEQPLWRLL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             L IRHVG   AR LA+ + S     ++    +A  N+          +G +IA+++ E
Sbjct: 513 TGLNIRHVGTSNARILAERFGSLGQLQEQSAENLAAVNE----------IGPVIAESVYE 562

Query: 615 FYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           F  +      V  L         +  +   E+        K  V TGTL+   R +A+E 
Sbjct: 563 FLHSDFGATLVNQLADLGLNLGTAKQVSPEEEGAELPWAGKTFVLTGTLETFTRQQAEEE 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G   S  +S+KT  ++ G   GSKLEKA++LG+ I+ E  F  +L++
Sbjct: 623 IRVRGGKASGSVSKKTSFVVAGAEAGSKLEKAEKLGISILTEADFTQMLEE 673


>gi|254422498|ref|ZP_05036216.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335]
 gi|196189987|gb|EDX84951.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335]
          Length = 694

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/714 (30%), Positives = 339/714 (47%), Gaps = 54/714 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +     + L  ++      YY    P + DS YD L R    +   +P L  S   + P 
Sbjct: 21  EIETRAAELRSQLQKASYAYYVLDAPELPDSVYDRLYRELQTLEDQYPGLQTS---DSPT 77

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G E       V H+IP  SLE  ++ E+   +  R  R   + D        E KID
Sbjct: 78  QRVGAEPAEQFTSVRHNIPLYSLENAFDTEEYLDWQARWQRL--EPDVGETTAVAELKID 135

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEV 191
           G  + + YE G  +    RGDG +GED++  +R I TIP  L        P ++EVRGE 
Sbjct: 136 GNALALTYENGMLIRGVTRGDGIAGEDITQNVRTIRTIPLRLHIENGQAPPPVVEVRGEA 195

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++  + F  +N +  A G   +ANPRNAA+G LR+L+   +  R L+FF + +       
Sbjct: 196 FLPLDVFDDINQKRQAEGTALFANPRNAAAGTLRQLDAKIVAERQLDFFAYTVLMPEGTG 255

Query: 251 ----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  Q+  L  ++ L F VN   +       + SYY+E +  R  LPY  DG+V K+
Sbjct: 256 DLDAPTTQWTALDLLQTLRFRVNPHRKLCQRAAEVASYYDEWEEKRHDLPYLTDGVVVKL 315

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D F LQ +LG   + PRW I+ K+  ++  T L  I +Q+GRTG +TPVA L PV + G 
Sbjct: 316 DSFELQDRLGFTNKFPRWAIALKYPAEEVPTTLNKITVQVGRTGAITPVAELSPVQLAGT 375

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATLHN D +  L           D+ +GD V+V++AGE+IP+VV ++ + R   A+
Sbjct: 376 TVSRATLHNADRLIEL-----------DLHLGDTVVVRKAGEIIPEVVRVLSDLRPKGAK 424

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            +  P+ CP+C   VV+          A  RC    +C A     L+H+ SRDA +I GL
Sbjct: 425 AYQLPTNCPVCDQPVVKPEGE------AVTRCVN-QSCPAILSGSLRHWASRDALDISGL 477

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +  +         +   AD++ L          +  +   G      L  +I   +
Sbjct: 478 GERLVQSWIDQS----VVTSIADLYDLT------LEDLLPLERMGKQLANKLLQAIALSK 527

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                + ++ LGIR VG+  A+ LA  + S    A    ++IA          ++  +G 
Sbjct: 528 QKPWAKVLYGLGIRLVGSTNAQILANRFPSVAMLAAADESVIA----------QIYGIGP 577

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            IAQ++ +++Q P N   +  L        +  +        +  K  V TGTL  ++R 
Sbjct: 578 EIAQSVRQWFQLPANQQLIARLEAAGLQLEATPQKIDQRPQPLMGKSFVLTGTLPTLKRA 637

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+  +   G  VS   S KTD ++VG+N GSK  KA +LG+K + E + + LL
Sbjct: 638 EAKAQIQAAGGRVSGAPSAKTDYVVVGENAGSKQAKADELGLKQLTEAELIELL 691


>gi|122971128|sp|Q14L37|DNLJ_SPICI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110005471|emb|CAK99793.1| dna ligase protein [Spiroplasma citri]
          Length = 667

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/713 (33%), Positives = 382/713 (53%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQA+K    L++++   +  YY    P + D EYD   +   AI   + +L      
Sbjct: 1   MTFEQAKKRSLVLKEQLEKWNYEYYVNDNPSVSDQEYDRALQELIAIEQQYSELITI--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G+++    K  H+ P LSL   +N +DL  F  +I  F        I +T E
Sbjct: 58  DSPTQRVSGQISEKFNKYVHTSPMLSLGNAFNYDDLIHFDEQIKEF---TALPEIEYTCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ Y+    V  A RGDG +GEDV+  I+ I +IP  L ++ P +I VRGEV
Sbjct: 115 LKIDGLSISLVYDNHVLVMGATRGDGLTGEDVTINIKQIKSIP--LRIDQPTLI-VRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+S  +F  +N+E +  G   +ANPRNAA+G LR+L+ T +  R LN F++      +  
Sbjct: 172 YLSVEEFNKINEERVKNGEFKFANPRNAAAGTLRQLDSTIVAKRKLNAFLYYYVNALQDG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + QYE LQ++  L F +N   R  +    + +Y  E +  R+ L Y+IDG+V KV+  +
Sbjct: 232 IQSQYEALQRLEQLKFKINPEYRYCSNIAAVWAYIQEYEPKRNQLGYEIDGIVIKVNNLN 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L  ++G  A++P+W I++KF  +   T+LL+I   +GRTG +T  A LEP+ I G ++  
Sbjct: 292 LYNRIGYTAKNPKWAIAYKFPAEVVVTKLLNIFPSVGRTGRITYNAVLEPIRIVGTIVRA 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D+I             RDIR+GD V VK+AG++IP+V++ +   R  +AQ +  
Sbjct: 352 ATLHNADFIT-----------ERDIRIGDNVQVKKAGDIIPEVINYVAARRQKNAQKWQE 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C S + R              C   + C  +    L+H+ SR+A NIEG+ ++ 
Sbjct: 401 ATHCPECNSLLERVEGE------VDQYCINSV-CPKKITRGLEHYCSRNAMNIEGISEKI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  FK E     ++  +D++ L++ +     +I  +  FG+ S  N+  SIN  +N SL
Sbjct: 454 IERLFKLE----YLKSFSDLYQLEQYR----AEIIELENFGEKSFENMITSINNSKNNSL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F+LGIRHVG + A+ LA+ + +  N A            +   L  +  +G I+A 
Sbjct: 506 ERLLFALGIRHVGQKTAKLLARQFKTIDNLAAM----------NIEQLSIINDIGPIVAA 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++V+++  P N   +  L +           ++++ + EN + V TG L K  R   +E 
Sbjct: 556 SVVDYFAIPANQQELALLRQNGVKMEYFATNQHLAQKFENYRFVITGVLSK-SREYFKEL 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +   G  VS  +S KT  ++ G + G+KL KAQ+L VKI+NEE+F  LL + +
Sbjct: 615 IESYGGQVSESVSAKTTYLLAGTDAGNKLVKAQKLNVKIINEEEFQQLLSKED 667


>gi|228476991|ref|ZP_04061629.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126]
 gi|228251010|gb|EEK10181.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126]
          Length = 652

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/702 (31%), Positives = 362/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L  +++ +   YY    P + D+EYD L R   A+   +P+  ++   + P ++
Sbjct: 2   EKRMKELVVKLNQYAKEYYTEDNPSVSDAEYDKLYRELVALEAEYPEYVQA---DSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+   +   D     +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDQRVKAEFPNAD-----YMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +
Sbjct: 114 SISLTYVDGVLQVGATRGDGSIGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N +    G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q +
Sbjct: 172 FERINIQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFLY--QEASPTERLTQND 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDDLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    LL +D Q+GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P+ CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-PMEVPTQCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  FK
Sbjct: 398 CGSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFK 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +E     ++  ADI+ L      ++     + GF + S   LY +I   +  S E+ ++ 
Sbjct: 451 AE----LVKDVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLYG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA++++ L + + S +  A      IA           V  +G++IA++I  ++
Sbjct: 501 LGIRHVGAKVSKQLLEAFGSIKELASADVEAIAA----------VDGLGEVIAKSIQRYF 550

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   ++ L           +K      +  K +V TG L+ ++R +A+  +  LGA
Sbjct: 551 AKEEAQVLLKELETYGVNLAYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD+++ G N GSKLEKAQ LG+++ +E   L L
Sbjct: 611 KVTGSVSKKTDLVVAGSNAGSKLEKAQSLGIEVKDEAWLLDL 652


>gi|194307280|gb|ACF42137.1| DNA ligase [Mycobacterium lepromatosis]
          Length = 686

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/720 (31%), Positives = 347/720 (48%), Gaps = 43/720 (5%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  ++   L +E+  H   YY    PII D+E+DAL  R   +    P+L     P+ P 
Sbjct: 4   ELLRQWRKLAEEVREHQFRYYVRDAPIISDAEFDALLGRLTVLEEQHPEL---RTPDSPT 60

Query: 76  NKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             IGG           H    LSL+   + ++L  +ITRI R           +  E K+
Sbjct: 61  QLIGGAGFTTDFVATEHLERMLSLDNASSEDELDAWITRIRREIGNDAH----YLCELKV 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGE 190
           DG  +++ Y  G    A  RGDGH+GEDV+   R I  +P  L+      IPE++EVRGE
Sbjct: 117 DGVALSLVYRNGLLNRATTRGDGHTGEDVTLNARTIEDVPERLTVSDIYPIPEVLEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           V+    DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG     
Sbjct: 177 VFFRVTDFQALNTSLVEEGKNPFANPRNSAAGSLRQKDPAVTAHRTLRMICHGLGHIEGF 236

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++    +R  G PV++     N   G+          R  + ++IDG+V K+DE 
Sbjct: 237 RPATQHQAYLALRAWGLPVSDHTTLVNDIAGVQRRIAYWAEHRHEVDHEIDGIVVKIDEL 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ + 
Sbjct: 297 ALQRRLGSTSRAPRWAIAYKYLPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVG 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +K            + + +GD V++++AGEVIP++V  +V+ R      F 
Sbjct: 357 QATLHNASEVKR-----------KGVLIGDTVVIRKAGEVIPEIVGPVVDLRDGSESEFV 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C  Q  ER+ H  SR   +I+GLG +
Sbjct: 406 MPTTCPECGTTL-----APEKEGDTDIRCPNARSCPGQLRERVFHVASRSVLDIQGLGYE 460

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                  ++     I    D+FTL       T    N  G    +   L  +++K +   
Sbjct: 461 AGVALLAAQ----VITSEGDLFTLTEDDLLRTELFRNKAGKLSANGKRLLVNVDKAKTAP 516

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA  + S           +A           V  VG  IA
Sbjct: 517 LWRVLVALSIRHVGPTAARALAAEFGSIDAILAASPEQLAA----------VEGVGAAIA 566

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            A+ E++    +   V+         +   + +V    E   +V TG+L    R  A+E 
Sbjct: 567 AAVTEWFAVDWHRAIVDKWRAAGVRMVDERDTSVPPTCEGLTIVVTGSLAGFSRDDAKEA 626

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           +   G  V+  +S+K   ++VGD PGSK +KA +LGV I++E+ F  LL+Q     ++ D
Sbjct: 627 IVARGGKVAGAVSKKIAYVVVGDLPGSKYDKAIELGVPILDEDGFRLLLEQGPPVQQVVD 686


>gi|322373465|ref|ZP_08048001.1| DNA ligase, NAD-dependent [Streptococcus sp. C150]
 gi|321278507|gb|EFX55576.1| DNA ligase, NAD-dependent [Streptococcus sp. C150]
          Length = 652

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/702 (31%), Positives = 364/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L  +++ +   YY    P + D+EYD L R   A+    P+L ++   + P ++
Sbjct: 2   EKRMKELVAKLNQYAKEYYTEDNPSVSDAEYDKLYRELVALEAEHPELVQA---DSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+   +   D     +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHEYPLYSLQDAFSREELDTFDKRVKDEFPNAD-----YMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +
Sbjct: 114 SISLTYVNGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N +    G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q +
Sbjct: 172 FERINTQRQENGEAEFANPRNAAAGTLRQLDTKVVAKRRLATFLY--QEASPTERLTQND 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLNEVTELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDYLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    LL +D Q+GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P+ CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-PMEVPTQCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  F+
Sbjct: 398 CGSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFQ 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +E     ++  ADI+ L      ++     + GF + S   LY +I   +  S E+ ++ 
Sbjct: 451 AE----LVKDVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQTSKENSAEKLLYG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA++++ L + + + ++ A      IA           V  +G++IA++I  ++
Sbjct: 501 LGIRHVGAKVSKQLLEAFETIKDLASADVEAIAA----------VDGLGEVIAKSIQRYF 550

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   ++ L           +K   +  +  K +V TG L+ ++R +A+  +  LGA
Sbjct: 551 VKEEVKVLLKELESYGINMAYLGQKVADNAILSGKTVVLTGKLEHLKRSEAKAKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD+++ G + GSKLEKAQ LG+ +++E   L L
Sbjct: 611 KVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIDVVDEAWLLNL 652


>gi|210630510|ref|ZP_03296493.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279]
 gi|210160444|gb|EEA91415.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279]
          Length = 756

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/739 (31%), Positives = 351/739 (47%), Gaps = 76/739 (10%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L   + YH   YY    P I D+ +D L      I  A P+L     P+    ++GG +
Sbjct: 53  ELRHLLDYHAYRYYALDAPEISDAAFDKLLIELQQIEAAHPELV---TPDSYTQRVGGYV 109

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           +     VTH     S++   N+E+L +++ R            + +T E KIDG  + I 
Sbjct: 110 SEQFTPVTHMARMYSMDDAMNLEELDEWLARTEDALGA---GRVAYTCELKIDGLGVAIT 166

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--------NIPEIIEVRGEVYIS 194
           Y+ G FV AA RGDG +GEDVS  +R I  +P  LS         +    IEVRGEVY+ 
Sbjct: 167 YQNGAFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEAALAHMGADRSAPIEVRGEVYMP 226

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN E  A GR+P+ANPRNAA+G LR+ +P    +R+L  F++ +  T+ +    
Sbjct: 227 KGSFARLNAEADAEGREPFANPRNAAAGSLRQKDPKVTASRHLATFIYAIADTAPLHVDS 286

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+  L  +R  GF VN  V +  +   + ++  +  + R  L YDIDG+V KVD F  Q 
Sbjct: 287 QHAFLDWLRRAGFSVNGSVARCTSPAEVHAFCADALAHRGDLDYDIDGVVVKVDSFDQQG 346

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  AR+PRW I+ KF  ++ +T L DI IQ+GRTG+LTPVA  +PV + G+ I  ATL
Sbjct: 347 DLGFTARAPRWAIAFKFPPEEKTTVLRDIRIQVGRTGVLTPVAEFDPVTVAGSTIARATL 406

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+            +D+R GD ++V +AG+VIP+VV  ++++R      +  P+ 
Sbjct: 407 HNLDEIRR-----------KDVRPGDTIIVHKAGDVIPEVVGPVLDKRPEGTAEWDMPAT 455

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S VV +          A+RC   L C AQ  ERL H+VSR   +++G+G + +D 
Sbjct: 456 CPACGSPVVHEDGE------VAYRCV-SLDCPAQLKERLLHWVSRGCMDVDGVGDELIDK 508

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS--------------VTNLY 539
             +    A  +   AD + L      +       L                       + 
Sbjct: 509 MIE----AGLLHDVADFYHLTVDAVAALDTGRTYLKDDKKKGVSAGDSIKVGATIAQKVV 564

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           D + + R   L R +F+LGIRHVG  +A  +A+ +L+    A      IA          
Sbjct: 565 DELTRSREQPLSRVLFALGIRHVGKSVAEVIAQRFLTVDALAAASEEDIAGC-------- 616

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEA---------------LLKEVSPSIGRHEKNVS 644
               +G  IA ++ +F   P N+  ++                  +    +    +   +
Sbjct: 617 --EGIGPKIAASVRQFLAVPENLEVLQRLREAGLSLEEDLGAAHAQAAQETGVAADLAEA 674

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +     V TGTL    R +A   +  LGA VS  +S+KT  ++ G   GSKL KA+ L
Sbjct: 675 QPLAGLTFVLTGTLVNRTRDEAGAALKLLGAKVSGSVSKKTSYLVAGPKAGSKLTKAESL 734

Query: 705 GVKIMNEEQFLFLLQQYNT 723
           GV +++E     +L     
Sbjct: 735 GVPVLDEAALEQILATGQI 753


>gi|239917127|ref|YP_002956685.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
 gi|239838334|gb|ACS30131.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
          Length = 797

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/799 (29%), Positives = 363/799 (45%), Gaps = 99/799 (12%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
              + +     R+E   L + +      YYQ   P I D+EYDAL RR + +    P+L 
Sbjct: 11  PDPQDIPAADLREEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELV 70

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-QKKDDNS 125
            +   + P  ++GGE++ +   V H     SLE ++++E+L  +  R  +   Q +   +
Sbjct: 71  SN---DSPTQEVGGEVSEAFAPVRHGARMYSLEDVFSVEELEVWFRRAAQALTQVRPGVA 127

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEI 184
             + +E KIDG  + +RY  G+ V AA RGDG +GEDV+A +R I  IP  L     P  
Sbjct: 128 PRWLVEVKIDGLAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAE 187

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
            EVRGEV++S   F  LN      G+ P+ANPRNAA+G LR+ +P     R L  FVHG+
Sbjct: 188 FEVRGEVFMSSAAFAELNARRAEEGQPPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGI 247

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHG-----IVSYYNEMKSIRSTLPYD 298
           G       + Q+E    +   G PV+   R+           +V+   E    R  L ++
Sbjct: 248 GSVEAFGLESQHEAYDALASWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHE 307

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V K D F+ Q+ LG  +R PRW  ++K+  ++  T L DI + +GRTG +TP A L
Sbjct: 308 IDGIVLKADAFADQRYLGHTSRVPRWAAAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVL 367

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ ++ ATLHN+D +K            + + +GD V+V++AG+VIP+VV  ++
Sbjct: 368 EPVTVAGSTVSLATLHNQDVVKA-----------KGVLIGDTVVVRKAGDVIPEVVGPVL 416

Query: 419 NERHP------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
             R        + + F  P+ CP C + +         +     RC    +C AQ   R+
Sbjct: 417 PLREKAIEAGRELREFVMPAHCPSCGTPL-----APAKEGDVDLRCPNARSCPAQLAGRV 471

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFK-------------SEDPAFSIRIPADIFTL------ 513
           +H  SR AF++E LG++   +  +               +    I   A IF L      
Sbjct: 472 EHLASRGAFDVEALGEEAARWLVQGPGEDPAEHEGHVRPEGPGPITAEAQIFDLASGTPE 531

Query: 514 ------QRRQQTSTTKIENILGFGD----------------------------------- 532
                      T   +    +                                       
Sbjct: 532 AITGPRGEDGLTDLQRSLGAVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPT 591

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +   L+D + K ++  L R + +L IRHVG   ARSLA  + S            A   
Sbjct: 592 ANTLRLFDELEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALR------AAAEA 645

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
            D   L  +  VG IIA A++E++    +   V+             +++    +E   +
Sbjct: 646 GDRDRLAEIDGVGPIIADALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPRTLEGLTV 705

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L+   R  A+E +   G   S  +S+KTD ++ G+  GSKL+KAQ LGV +++E 
Sbjct: 706 VVTGSLEGFSRDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEA 765

Query: 713 QFLFLLQQYNTTLRIHDDD 731
           +F  LL      +R  D D
Sbjct: 766 EFTALLAGGPDAVRPADTD 784


>gi|160945211|ref|ZP_02092437.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442942|gb|EDP19947.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii
           M21/2]
          Length = 671

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/716 (31%), Positives = 364/716 (50%), Gaps = 51/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L +EQA+K +  L   I  ++  YY    P + D EYDAL R    +   FP L  +
Sbjct: 1   MEYLELEQAKKRVKELRAIIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                P  K+GG  +  L KVTH++   SL   ++ ++LR F  R+             +
Sbjct: 61  A---SPTQKVGGTASSKLPKVTHAVKMESLLDAFSFDELRDFDRRVRE-----AGVEPEY 112

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG   ++ YE G+ V A+ RGDG  GEDV+A +RAI +IP+ L  + PE +EVR
Sbjct: 113 VVEIKIDGLSCSLEYENGQLVRASTRGDGVVGEDVTANVRAIRSIPKTLK-DAPEFLEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GEVY+    F  L  E    G  P+ NPRNAA+G LR+ +     +R L+ FV  + +  
Sbjct: 172 GEVYMPHGAFQHLCAEQELQGAAPFKNPRNAAAGSLRQKDARITGSRGLSIFVFNVQQIR 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E L  ++ LG PV+      +     ++    +   RS L +D+DG V KV+
Sbjct: 232 GKTLTKHSESLDYLKSLGLPVSPRYHVVHDIEDAIAEIENIGQNRSKLDFDMDGAVIKVN 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+ ++ +G   + PRW I+ K+  +   T L  I++ +GRTG+LTP A  +PV + G  
Sbjct: 292 DFAQRELMGSTNKFPRWAIAFKYPPEVKETTLRSIEVAVGRTGVLTPTACFDPVFLAGTT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHNED+I+              + +GD + V++AG++IP+V+ +  +     A+P
Sbjct: 352 VARATLHNEDFIRQF-----------GLCIGDTIQVRKAGDIIPEVIGVTHHA--EGAEP 398

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           ++ P+ CP C + VV   +       AA RC     C AQ L  + HF SRDA +IEGLG
Sbjct: 399 YTMPTVCPSCGAPVVHLEDE------AALRCVNP-ECPAQALRNIIHFASRDAMDIEGLG 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       + E     +   ADI+TL R Q     K      F + S  NL  +I   + 
Sbjct: 452 EAVATQLVEKE----LVHSAADIYTLTREQLLELDK------FKEKSADNLLQAITASKQ 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L++ +F  GIR++G + A  LA+++ + Q   +               + ++   G +
Sbjct: 502 NNLDKLLFGFGIRNIGDKAAALLAEHFGTLQAIREATAE----------QVSQIDGFGGV 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +AQ++VEF+        V  L  +   ++    +    ++  K LV TGTL+ + R++A+
Sbjct: 552 MAQSVVEFFAKEGTTDLVHRL-ADAGVNMQWKGEPKGDKLAGKTLVVTGTLETLSRNEAE 610

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             + + G   S  +S+KT  ++ G   GSKL KAQ LGV ++ E++FL +LQ    
Sbjct: 611 ALIVKNGGKASGSVSKKTAYVVAGAAAGSKLTKAQALGVPVLTEQEFLAMLQDAPA 666


>gi|307293327|ref|ZP_07573173.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1]
 gi|306881393|gb|EFN12609.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1]
          Length = 711

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/742 (38%), Positives = 419/742 (56%), Gaps = 56/742 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +     ++  +A   L  L +EI+ H+  Y+   +P I D+ YDAL R  +A+  AFP L
Sbjct: 1   MTDPTPMTEAEAANRLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            RS+ PN    ++G     +L KV H++  +SL+  +  ED+ +FI R+ RF    +D  
Sbjct: 61  IRSDSPNA---QVGAAPTSALKKVQHAVRMMSLDNGFADEDIAEFIARVRRFLALPEDAP 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEI 184
           +  T EPKIDG   ++RYEKG+ V AA RGDG +GEDV+A +R I  IP+ L+   +P++
Sbjct: 118 VALTAEPKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVRTIADIPQRLTGQAVPDL 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNF 238
            EVRGEVY++K DF+ALN+ ++A    P     +ANPRNAA+G LR+ +     +R L F
Sbjct: 178 FEVRGEVYMAKADFVALNERLLAEAEDPEKARQFANPRNAAAGSLRQKDAAVTASRPLRF 237

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             HG G+ S + A+ Q  ++Q +   G PV++ +   +T   ++++Y  +++ R+ LP+D
Sbjct: 238 LAHGWGEVSAVPAQTQLGVMQAIAGWGLPVSDRLACVDTLEALIAHYRAIEAARAELPFD 297

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q++LG  A++PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL
Sbjct: 298 IDGVVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRL 357

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG +++N TLHN D I  L            +R GDR++V+RAG+VIP+VVD + 
Sbjct: 358 TPVTVGGVVVSNVTLHNADEIARL-----------GVRPGDRIVVQRAGDVIPQVVDNLT 406

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R     PF FP  CP+CQS  VR+            RCTGGL C+AQ+ ERL+HFVSR
Sbjct: 407 --RDDPRSPFIFPDHCPVCQSEAVREEGE------VDIRCTGGLICAAQRFERLRHFVSR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG++ ++ F         I  PADIF L+  +     +     G+ + SV NL
Sbjct: 459 AALDIEGLGEKSIEEFLD----LGWIAEPADIFRLRTHRTDLLGR----EGWKEKSVDNL 510

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND----- 593
             +I  +R     R +F LGIRH+GA  AR L K Y +          IIA  +      
Sbjct: 511 LAAIEAKRQPDAARLLFGLGIRHIGAVTARDLLKRYTTLPAIHGLAKEIIALRDAAAPAE 570

Query: 594 -------------DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                             I V  VG  +  A+ +F+  P N+     LL EVSP     E
Sbjct: 571 GEEESRFRNRLDKAIAEQIGVENVGSAVGHALADFFHEPHNVEVWNDLLSEVSPPDYVVE 630

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
              S+ +  K +VFTG L+ + R +A+    +LGA  +  +S KTD+++ G   GSKL++
Sbjct: 631 TTASA-VTGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKQ 689

Query: 701 AQQLGVKIMNEEQFLFLLQQYN 722
           A  LG+++++E  +  +++   
Sbjct: 690 AAALGIEVIDEAAWAEIVKAAG 711


>gi|220920535|ref|YP_002495836.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060]
 gi|254781366|sp|B8ICE5|DNLJ_METNO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219945141|gb|ACL55533.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060]
          Length = 829

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/826 (35%), Positives = 433/826 (52%), Gaps = 122/826 (14%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E ++  QAR+   SL  EI+ HD  Y+    PII D+EYDAL+RR +AI   FP+LA 
Sbjct: 10  PVEEMTAAQAREAHESLSAEIAEHDRRYHGEDAPIISDAEYDALRRRLEAIEERFPELAG 69

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +   +     +G + +    KV H++P LSL   +  E++ +F+ R+ RF        + 
Sbjct: 70  TGAAS---VSVGAKASDKFAKVRHAVPMLSLGNAFAEEEITEFVERVRRFLGLPASEPLA 126

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           FT EPKIDG  +++RYE G+ V AA RGDG  GEDV+A +R I  IP  L   ++PEI E
Sbjct: 127 FTAEPKIDGLSLSLRYEGGRLVTAATRGDGEVGEDVTANVRTIREIPHELAGDDVPEICE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF A+N      GR  +ANPRNAA+G LR+L+P    +R L FF +  G+
Sbjct: 187 VRGEVYLSHADFAAINARQEEAGRPLFANPRNAAAGSLRQLDPGITASRPLRFFAYAAGE 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A+ Q  ++   R  G PVN   ++  +   ++++Y  +++ R+ L YDIDG+VYK
Sbjct: 247 MSSWPAETQSGLIGAFRRFGLPVNPRTKRCTSVAEMLAHYRAIETERAELGYDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VDEF+LQ++LG  AR+PRW ++HKF  ++A T +  I+I +GRTG L P+ARL+PV +GG
Sbjct: 307 VDEFALQRRLGFVARAPRWALAHKFPAQRAVTVIEAIEINVGRTGSLNPLARLKPVTVGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVMR------------------GGRDIRVGDRVLVKRAG 407
            +++NATLHNEDYI+G+DA G  +R                   G D+RVGD V+V RAG
Sbjct: 367 VVVSNATLHNEDYIRGIDADGNTIRSGINIWDGFRLREDVDLRQGSDVRVGDTVVVLRAG 426

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           +VIPKV D+++  R  DA P++FP  CP C S  VR  NP+TGKL +  RCTGGL C AQ
Sbjct: 427 DVIPKVADVVLERRPADAVPYAFPETCPACGSHAVRAYNPRTGKLDSVRRCTGGLICPAQ 486

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQ 517
             ERL+HFVSR+AF+IEG G+  +   F+    A  +R PAD+F L           RRQ
Sbjct: 487 GQERLRHFVSRNAFDIEGFGETYIATLFE----AGLVRQPADLFRLDFEPLKAAIVARRQ 542

Query: 518 QTSTTKI------------ENILGFGDVSVTNLYDSINKRRN------------------ 547
             S  +             +      D ++ NL  ++  RR                   
Sbjct: 543 ALSAERALAAGKTPEAKKAKPKANEEDKAIHNLLAAVEARRTIPLNRFIFALGIEQVGEA 602

Query: 548 -------------------------ISLERFIFSLGIRHVGAEI---------------- 566
                                         +I    +  VG                   
Sbjct: 603 TAKALAKHFPDMPALMEGVRAAAACRPGPDWIELASLPRVGPTTRERLLAAAEAGETDLL 662

Query: 567 ------------ARSLAKYYLSYQNFAQEINNII-AHNNDDWLSLIRVPLVGDIIAQAIV 613
                         +L   Y         +   +     D +  L     +G +   +++
Sbjct: 663 ADGAVTRLTSAQKEALLAAYGDRDGLRNAVERALRQKPGDAYRHLADDSEIGAVTTASLI 722

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           EF+    N+ AVEALL+EV           ++    + +VFTG+L+++ R +A+    +L
Sbjct: 723 EFFSEAHNVEAVEALLREVRTERAGTPA-AAAVFSGQTVVFTGSLERMTRSEAKATAERL 781

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           GA VS  +S KTD+++ G   GSKL+ A++ GV++++E ++L +++
Sbjct: 782 GAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVRVISEAEWLAMVE 827


>gi|110637718|ref|YP_677925.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354667|sp|Q11VI1|DNLJ_CYTH3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110280399|gb|ABG58585.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406]
          Length = 670

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/714 (30%), Positives = 371/714 (51%), Gaps = 51/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  QA   +  L + + YH++ YYQ     I D E+D L +    +   FP   ++   
Sbjct: 1   MNDAQALARIEELNKVLHYHNNLYYQKDTTEISDFEFDTLLQELIELEKQFPLYLKA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      ++H  P LSL   ++ E++R+F  R+ +       +++ +  E
Sbjct: 58  DSPSQRVGGTVTKEFASISHKYPMLSLSNTYSEEEIREFDERVQKAVG----HAVEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
            K DG  I+I Y+ G    A  RGDG  G+DV+  I+ I +IP  + S   PE  EVRGE
Sbjct: 114 MKFDGVAISITYKNGMIAQAVTRGDGVRGDDVTNNIKTIKSIPLKIQSATFPEEFEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           VY+    F  +N E   +G    ANPRNAASG ++  +   +  R L+ F++ L + S  
Sbjct: 174 VYLPYEMFERINQEREDIGEAALANPRNAASGTVKMQDSGIVAKRALDCFIYSLLQDSNK 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                   L +++  GF V++  +       I+ Y N     R  LP   DG+V KV++ 
Sbjct: 234 QP-THAAALAQLKEWGFRVSDSYKVCKNVDEIIQYINHWSEERFKLPLATDGIVIKVNDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  A+SPRW I++KF  ++AST +L ++ Q+GRTG +TPVA L PV++ G  + 
Sbjct: 293 RLQSELGMTAKSPRWAIAYKFKAEEASTPILSVEYQVGRTGAVTPVANLAPVHLAGTTVK 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++ L+           + +GD V V++ GE+IPK+  + V++R   +Q   
Sbjct: 353 RATLHNANEMERLN-----------LHIGDTVFVEKGGEIIPKITRVDVSKRIAGSQMIP 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F   CP+C ++++R          AA  C     C+ Q   +++HF+ R A NI+G+G +
Sbjct: 402 FIQNCPVCDTKLIRIEGE------AAWYCPNDKGCAPQITGKIEHFIQRKAMNIDGIGSE 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++  ++ +     IR  AD++TL   Q     +      FG+ SVTN+ + I   +   
Sbjct: 456 TIELLYQKK----LIRNVADLYTLTYDQLIQLDR------FGEKSVTNVLNGIEASKQTP 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +  +F++GIR+VG+ +A  LA ++ S          I A        L++ P +G  IA
Sbjct: 506 FKSVLFAIGIRYVGSTVAEKLALHFKS----------INALEKASIEELLQAPEIGIKIA 555

Query: 610 QAIVEFYQNPRNICAVEA-LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666
           Q+I+E++    N+  +E      V   +  HE  K  S +   K  V +G  +  +R + 
Sbjct: 556 QSIIEWFSVDTNVQLIEDLKKAGVKLELSEHEILKPESDKFAGKSFVISGVFENYERDEL 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ + + G  +S+ ++ K + ++ G+N G +KLEKAQ+L + I++E +F+ LL 
Sbjct: 616 KDLILKNGGKISSGITGKLNYLVAGENMGPAKLEKAQKLNITILSEAEFISLLN 669


>gi|291557760|emb|CBL34877.1| DNA ligase, NAD-dependent [Eubacterium siraeum V10Sc8a]
          Length = 660

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/710 (32%), Positives = 367/710 (51%), Gaps = 51/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQ + E   L +E+  H+  YY    P I D EYD L RR   I    P++      
Sbjct: 1   MDKEQIKSEYEQLCREVEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIV---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG    +  KVTH +   SL+ +++  +L +F  R+ +   K       + +E
Sbjct: 58  SSPTQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERVKKAVGK-----AVYCVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ Y+ G F   + RGDG  GED++  ++ I +IP  L+  IP  IEVRGEV
Sbjct: 113 PKIDGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMELNEKIP-FIEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K DF  L  + +    +P  NPRNAA+G LR+ +     +R L+ FV  L +     
Sbjct: 172 YMPKADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIEGRE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  M+ LGF V +G +  +     VS   E+   R +  YDIDG V KVD F 
Sbjct: 232 LTCHSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDNFE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L+ +LG  A+ P+W ++ K+  ++  T+LLDI+I +GRTG LTPVA  EPV + G  ++ 
Sbjct: 292 LRNELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A LHN+DYI             +DIR+GD + V++AG++IP+VV  + +    +++PF  
Sbjct: 352 AVLHNQDYIDS-----------KDIRIGDIIAVRKAGDIIPEVVRSVSHA--ENSEPFII 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C  +  R  +       A  RC   + C AQ L+ ++HF SR A NI+GLG+  
Sbjct: 399 PHICPVCHGKAERAEDE------AVIRCVN-IDCPAQLLKNIEHFASRPAMNIDGLGEAV 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    ++      I   AD+++LQ++        E + GF  VS + L  +I   +  S 
Sbjct: 452 VKQLVENR----LISTVADLYSLQQQDL------EMLPGFAKVSASKLIANIENSKANSP 501

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R +F+LGI+ +G + A+ L K++ S +  ++ +   I+           V   GDI+A 
Sbjct: 502 DRLLFALGIKGIGQKNAQLLMKHFGSIEKLSETLPEEISA----------VENFGDILAN 551

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I      P     +E L      +        S ++     V TGTL  + R +A+  +
Sbjct: 552 NIFTALHEPHMTELIERLKSY-GVNTVYQSDVKSDKLAGLTFVITGTLPDMTRDEAKTLI 610

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            Q G   S  +SRKT  ++ G+  GSKL KAQQLGV +++++Q + ++ +
Sbjct: 611 EQNGGKCSGSVSRKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMIGE 660


>gi|332188479|ref|ZP_08390201.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17]
 gi|332011491|gb|EGI53574.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17]
          Length = 712

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/719 (40%), Positives = 415/719 (57%), Gaps = 56/719 (7%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
           +EI++H+  Y+    P I D++YDAL RR  AI  AFP L RS+ PN    ++G      
Sbjct: 23  REIAHHNRLYHTEDAPEISDADYDALIRRNMAIEAAFPHLIRSDSPN---RQVGAAPAAH 79

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
           L KV H+ P  SL+  ++ E++ +FI R+ R+ +  DD  +  T EPKIDG   ++RY  
Sbjct: 80  LAKVAHARPMTSLDNAFSDEEVEEFIGRVRRYLKLPDDEPVTLTAEPKIDGLSCSLRYVD 139

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--- 202
           G+ V A  RGDG  GEDV+  +R I  IP+ L    P + EVRGEVY+SK DF ALN   
Sbjct: 140 GRLVQALTRGDGTIGEDVTENVRTIADIPQSLPAPAPTVFEVRGEVYMSKVDFTALNARL 199

Query: 203 -DEMIAVGRKP--YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
             E    G++   +ANPRNAA+G LR+ NP     R L F  HG G+ SE+ A+ Q++M+
Sbjct: 200 AQEAAETGKEARQFANPRNAAAGSLRQKNPAITAGRPLRFLAHGWGEASEVPAETQFDMV 259

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +  R  GFP+     +       ++ Y  +++ R+ LP+DIDG+VYKVD    Q +LG  
Sbjct: 260 ETWRRWGFPIAEAFARVPDAAAALAVYRTIEAQRADLPFDIDGVVYKVDRLDWQARLGIV 319

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            R+PRW I+HKF  ++A T L  IDIQ+GRTG LTPVARLE V +GG ++TNATLHN D 
Sbjct: 320 GRTPRWAIAHKFPAERAQTTLERIDIQVGRTGALTPVARLEAVTVGGVVVTNATLHNADE 379

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+ L            +R GDRV+++RAG+VIP++V+ +   RH   +PF FP  CP C 
Sbjct: 380 IERL-----------GVRPGDRVVLQRAGDVIPQIVENLT--RHVAREPFVFPDHCPECG 426

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S   R      G+     RCTGGL C AQ++ERL HFVSR AF+I GLG  +++ FF+  
Sbjct: 427 SLATR------GEGEVVIRCTGGLICPAQRVERLIHFVSRHAFDITGLGLVRVEEFFRD- 479

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I  PADIF L + ++    +        ++ V  L  +I+ RR+ISL+RF+F+LG
Sbjct: 480 ---GLIASPADIFRLAQHREALIQR----ERMSELVVDKLLAAIDARRDISLDRFLFALG 532

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND------------------DWLSLIR 600
           IRHVG   AR LA+ ++S   F   I+  +    +                    ++ I 
Sbjct: 533 IRHVGEITARDLARRFVSMAGFRAMIDAALQVRAETVPALGEPERKFELRRQRAIVAAID 592

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
            P +G  +A A+++F+    N   V+ LL EV+P+   H+   S  +  K LVFTGTL+ 
Sbjct: 593 TPQIGPEVADALLDFFAEEHNRDVVDDLLSEVTPADVVHQTRESD-VSGKTLVFTGTLET 651

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A+     LGA VS  +S KTD++I G   GSKL+KAQ LG+ +++E  +  L+ 
Sbjct: 652 LSRDEAKAQAEALGARVSGSVSAKTDLVIAGPGAGSKLKKAQDLGIPVIDEAAWNALVA 710


>gi|166216285|sp|Q03JF6|DNLJ_STRTD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 652

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/702 (31%), Positives = 365/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L  +++ +   YY    P + D+EYD L R    +    P+L ++   + P ++
Sbjct: 2   EKRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQA---DSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  RI     K +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRI-----KSEFPNADYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +
Sbjct: 114 SISLTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N +    G   +ANPRNAA+G LR+L+   +  R L  F +     +E     Q +
Sbjct: 172 FERINTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERL--TQND 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++   +LL +D Q+GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R         PS CP 
Sbjct: 350 DYIT-----------EKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-AMPVPSQCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  FK
Sbjct: 398 CGSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFK 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +E     ++  ADI+ L      ++     + GF + S   LY +I   +  S E+ ++ 
Sbjct: 451 AE----LVKEVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLYG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA++++ L + + + +  A          + D  ++  V  +G++IA++I  ++
Sbjct: 501 LGIRHVGAKVSKQLLESFGTIKELA----------SADVQAIAAVDGLGEVIAKSIQRYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   ++      V+ S    +    + +  K +V TG L+ ++R +A+  +  LGA
Sbjct: 551 AKEEAQVLLKELESYGVNLSYLGQKVTDDAILSGKTVVLTGKLEHLKRSEAKAKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 611 KVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652


>gi|146329194|ref|YP_001209306.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A]
 gi|166215582|sp|A5EVZ5|DNLJ_DICNV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146232664|gb|ABQ13642.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A]
          Length = 678

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/713 (35%), Positives = 389/713 (54%), Gaps = 46/713 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              EL +L Q I  H+  YY    P I DSE+DAL ++  A+  A      +   + P  
Sbjct: 8   IAAELEALRQTIRAHEYAYYVLEAPNIADSEFDALMQKLRALEAASGLPIPA---DSPTQ 64

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+ +     V H I  LSL+ ++N ++   F  R+          +I    EPK DG
Sbjct: 65  RVGGKADNRFRNVAHHIAMLSLDNVFNADEFADFYRRLQEQL--SPTTAISLIAEPKFDG 122

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             I +RYE G    A+ RGDG +GEDV+  +R I TIP  L +   P++IE+RGE+Y+ K
Sbjct: 123 LAINLRYENGILQRASTRGDGITGEDVTQNVRTISTIPLRLNTHTPPDVIEIRGEIYMPK 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI-FAKG 253
             F ALN++  A G K +ANPRNAASG LR+L+P    R  L FF +G G+ +     + 
Sbjct: 183 KAFYALNEQAAANGEKIFANPRNAASGSLRQLDPRITARRQLAFFAYGYGEITNYQLPET 242

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              +L++ R    PV +  ++A T    ++ Y +    R  LP+DIDG+V+KV+ F+ Q+
Sbjct: 243 YEALLEQYRAWHIPVCSLHQKAATLPEALAAYQQFAKQREQLPFDIDGVVFKVNRFADQQ 302

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           + G  AR+PRW I+ KF   + +TR+  I++Q+GRTG +TPVARL+PV I G ++ +A+L
Sbjct: 303 RAGFLARAPRWAIAWKFPALEKTTRIEAIELQVGRTGAVTPVARLQPVTIAGVVVRSASL 362

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   I             +DIRVGD + ++RAG+VIP+VV +++ +R PDA  F+ P  
Sbjct: 363 HNAREIAR-----------KDIRVGDTIFIRRAGDVIPEVVSVVLEKRLPDAPVFAMPEH 411

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C + +V++ +       A  RC+GGL C AQ++  L HF SR+A +I GLG++ +  
Sbjct: 412 CPVCAAAIVQNEDE------AVARCSGGLHCPAQRVAALIHFASREALDIRGLGEKLIQQ 465

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +R PAD+F L      S          G  S  N+  +I+  +  +L RF
Sbjct: 466 LVAQE----FVRTPADLFCLTADDWASL------PRMGKKSAHNVMTAIDAAKKTTLARF 515

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGIR VG+  A++LA ++     F       +            +  +GD++A  I 
Sbjct: 516 IYALGIRGVGSVNAQALAAHFGDLAAFMAADRAALQ----------EIEGIGDVVAADIE 565

Query: 614 EFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F+ +  N   + A++   V  S    +K + + +  K +V TGTL  + R +AQ+ +  
Sbjct: 566 HFFADEDNRAVIAAIVAAGVHWSTELTKKIIDAPLLGKTVVITGTLPSLSRAEAQKRLET 625

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           LGA V++ +SR+TD +++G + GSKL +AQ   V I++E Q     Q Y   +
Sbjct: 626 LGAKVTSQVSRQTDFLLLGADAGSKLARAQAFSVPIIDEAQLQTWWQHYGNAV 678


>gi|167750769|ref|ZP_02422896.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702]
 gi|167656204|gb|EDS00334.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702]
          Length = 660

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/710 (32%), Positives = 365/710 (51%), Gaps = 51/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQ + E   L ++   H+  YY    P I D EYD L RR   I    P++      
Sbjct: 1   MDKEQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIV---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG    +  KVTH +   SL+ +++  +L +F  R+ +   K       + +E
Sbjct: 58  SSPTQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERVKKAVGK-----AVYCVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ Y+ G F   + RGDG  GED++  ++ I +IP  L+  IP  IEVRGEV
Sbjct: 113 PKIDGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMELNEKIP-FIEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K DF  L  + +    +P  NPRNAA+G LR+ +     +R L+ FV  L + +   
Sbjct: 172 YMPKADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIAGRE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  M+ LGF V +G +  +     VS   E+   R +  YDIDG V KVD F 
Sbjct: 232 LTCHSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDNFE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L+ +LG  A+ P+W ++ K+  ++  T+LLDI+I +GRTG LTPVA  EPV + G  ++ 
Sbjct: 292 LRNELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A LHN+DYI             +DIR+GD + V++AG++IP+VV  + +    +++PF  
Sbjct: 352 AVLHNQDYIDS-----------KDIRIGDIIAVRKAGDIIPEVVRSVSHA--ENSEPFVI 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C  +  R  +       A  RC   + C AQ L+ ++HF SR A NI+GLG+  
Sbjct: 399 PHICPVCHGKAERAEDE------AVIRCVN-IDCPAQLLKNIEHFASRPAMNIDGLGEAV 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    ++      I   AD++ LQ++        E + GF  VS + L  +I   +  S 
Sbjct: 452 VKQLVENR----LISTVADLYGLQQQDL------EMLPGFAKVSASKLIANIENSKANSP 501

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R +F+LGI+ +G + A+ L K++ S +  ++     I+           V   GDI+A 
Sbjct: 502 DRLLFALGIKGIGQKNAQLLMKHFGSIEKLSETSPEEISA----------VENFGDILAN 551

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I      P     ++ L      +        S ++     V TGTL  + R +A+  +
Sbjct: 552 NIFTALHEPHMTELIKRLKSY-GVNTVYQSDVKSDKLAGLTFVITGTLPDMTRDEAKTLI 610

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            Q G   S  +S+KT  ++ G+  GSKL KAQQLGV +++++Q + ++ +
Sbjct: 611 EQNGGKCSGSVSKKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMIGE 660


>gi|294011619|ref|YP_003545079.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S]
 gi|292674949|dbj|BAI96467.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S]
          Length = 711

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/742 (37%), Positives = 421/742 (56%), Gaps = 56/742 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +  + +++  +A   L  L +EI+ H+  Y+   +P I D+ YDAL R  +A+  AFP L
Sbjct: 1   MTDLTSMTEAEAANHLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            RS+ PN    ++G     +L KV H++  +SL+  +  ED+ +FI R+ RF    ++  
Sbjct: 61  VRSDSPNA---QVGAAPTSALKKVQHAVRMMSLDNGFADEDIAEFIARVRRFLALPENAP 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
           +  T EPKIDG   ++RYEKG+ V AA RGDG +GEDV+A +R I  IP  L+ + +P++
Sbjct: 118 VALTAEPKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVRTIADIPERLTGDTVPDL 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNF 238
            EVRGEVY++K +F+ALN+ ++A    P     +ANPRNAA+G LR+ +     +R L F
Sbjct: 178 FEVRGEVYMAKANFVALNERLLAEAEDPEKARQFANPRNAAAGSLRQKDAAVTASRPLRF 237

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             HG G+ S + A+ Q  ++Q +   G PV++ +   +T   ++++Y  +++ R+ LP+D
Sbjct: 238 LAHGWGEVSAVPAETQLGVMQAIASWGLPVSDRLTCVDTLESLIAHYRAIEAARAELPFD 297

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q++LG  A++PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL
Sbjct: 298 IDGVVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRL 357

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG +++N TLHN D I  L            +R GDR++V+RAG+VIP+VVD + 
Sbjct: 358 TPVTVGGVVVSNVTLHNADEIARL-----------GVRPGDRIVVQRAGDVIPQVVDNLT 406

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R     PF+FP  CP+CQS  VR+            RCTGGL C AQ+ ERL+HFVSR
Sbjct: 407 --RDDPRAPFAFPDHCPVCQSEAVREEGE------VDIRCTGGLICPAQRFERLRHFVSR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG++ ++ F         I  PADIF L+  +     +     G+ + SV NL
Sbjct: 459 AALDIEGLGEKSIEEFLD----LGWIAEPADIFRLKTHRADLMGR----EGWKEKSVDNL 510

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW--- 595
             +I  +R     R +F LGIRH+GA  AR L K Y +          IIA  +      
Sbjct: 511 LAAIEAKRQPDAARLLFGLGIRHIGAVTARDLLKRYATLPAIHALALEIIALRDAAQPAE 570

Query: 596 ---------------LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                             I V  VG  +  A+ +F+  P N+     LL EVSP     E
Sbjct: 571 GEEESRFRNRLDKAIAEQIGVENVGSAVGHALADFFHEPHNVEVWNDLLSEVSPPDYVVE 630

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
              S+ +  K +VFTG L+ + R +A+    ++GA  +  +S KTD+++ G   GSKL++
Sbjct: 631 TTASA-VTGKTVVFTGKLETMSRDEAKAQAERMGAKAAGSVSAKTDLVVAGPGAGSKLKQ 689

Query: 701 AQQLGVKIMNEEQFLFLLQQYN 722
           A  LG+++++E  +  +++   
Sbjct: 690 AAALGIEVIDEAAWAEIVKAAG 711


>gi|218295128|ref|ZP_03495964.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23]
 gi|218244331|gb|EED10856.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23]
          Length = 674

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/712 (32%), Positives = 383/712 (53%), Gaps = 52/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E AR+ ++ L   I YH+  YY    P I D+EYD L R    +   FP+L   + P
Sbjct: 1   MTLEAARRRVNELRDLIRYHNYLYYVLDAPEISDAEYDRLLRELKELEERFPEL---QSP 57

Query: 72  NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G     S    V H     SL+  ++++++R F  RI R   +K      +T+
Sbjct: 58  DSPTEQVGARPLESTFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK--GPFLYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  I TIPR L+  +P+ +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIRTIPRRLT-GVPDRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKT-SE 248
           VY+    FL LN E+   G + + NPRNAA+G LR+ +P    R  L    + LG    E
Sbjct: 175 VYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATFYALGLGLEE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q+++L  +R  GFPV +G  +A    G+   Y      R  LP++ DG+V K+D+
Sbjct: 235 TGLKSQHDLLLWLRERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEADGVVVKLDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +L ++LG  AR+PR+ +++KF  ++  TRLL +  Q+GRTG +TPV  LEPV I G+ +
Sbjct: 295 LALWRELGYTARAPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLEPVFIEGSEV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE +I+ L           D+R+GD VLV +AG VIP+V+ ++   R  + +P 
Sbjct: 355 SRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKERRTGEEKPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C   ++++           HRC   L C A++ E ++H+ SR A +I+GLG+
Sbjct: 404 LWPENCPECGHALIKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIQGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       +R  AD++ L++    +  ++      G+ S  NL   I + +  
Sbjct: 455 KLIEKLLEK----GLVRDVADLYRLKKEDLVNLERM------GEKSAENLLRQIEESKGR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +++LG+  VG  +AR+LA  +       +               L+ V  VG++ 
Sbjct: 505 GLERLLYALGLPGVGEVLARNLALRFGHMDRLLEA----------GLEDLLEVEGVGELT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+AI+   ++P     V  L +       +  +     ++    V TG L +  R + + 
Sbjct: 555 ARAILNTLKDPEFRDLVRRLKEAGVEMEAKERE--GEALKGLTFVITGELSRP-REEVKA 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  ++EE+   L+++
Sbjct: 612 LLRRLGAKVTDSVSRKTGFLVVGENPGSKLEKARALGVPTLSEEELYRLIEE 663


>gi|87301433|ref|ZP_01084273.1| DNA ligase [Synechococcus sp. WH 5701]
 gi|87283650|gb|EAQ75604.1| DNA ligase [Synechococcus sp. WH 5701]
          Length = 698

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/734 (30%), Positives = 352/734 (47%), Gaps = 65/734 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R     L + ++     YY    P + D+ YD L R  + +    P+L     P+ P  +
Sbjct: 2   RALAEELRRLLNRAAHAYYVLDSPEMEDAVYDRLYRELEQLERLHPELI---SPDSPTRR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEP 132
           +GG        V H I  LSLE  ++IE+L  +  R+ +   +         ++    E 
Sbjct: 59  VGGSPAEGFQAVRHRIGLLSLENAFSIEELEAWYGRLLKVLDRSAPPGEALPALPMVGEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191
           KIDG  + + YE G  V AA RGDG SGE+++A +R I ++P  L L + PE +EVRGE 
Sbjct: 119 KIDGNALALSYEHGLLVRAATRGDGESGEEITANVRTIQSVPLRLLLEDPPEWVEVRGEA 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL------- 243
            I    F  +N E    G   +ANPRNA +G LR+L+P  +  R L+FF + L       
Sbjct: 179 LIPDGTFAEINAERAGRGEPLFANPRNACAGTLRQLDPQVVAARRLDFFAYTLHLPDDWR 238

Query: 244 ---GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
              G       + Q+E L+ +   GF VN           + +++   +  R  LPY  D
Sbjct: 239 PAPGSGDPGRPRSQWESLRWLAAAGFRVNPNAALCPDLAAVEAFFAAWEHKRRDLPYATD 298

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+D+  LQ   G   ++PRW I+ K+A ++A +RLL +  Q+GRTG++TPVA  EP
Sbjct: 299 GVVVKLDDLRLQADAGFTQKAPRWAIALKYAAEEAPSRLLRLVAQVGRTGVVTPVAEFEP 358

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G  ++ ATLHN D +  L           D+  GD ++V++AGE+IP+VV ++   
Sbjct: 359 VPLAGTSVSRATLHNADRLAEL-----------DLHAGDTIVVRKAGEIIPEVVRVLAEL 407

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R P A P   PS CP C S +VR+         AA RC    +C A     L+H+VS+ A
Sbjct: 408 RPPGAAPLQLPSSCPECGSALVREEGE------AATRCVNS-SCPAILRGALRHWVSKGA 460

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +++GLG + ++           +R  AD++ L      S  ++      G+ S  NL +
Sbjct: 461 MDVDGLGAKLVEQLVDR----GLVRSIADLYRLDAALLASLERM------GETSAANLVE 510

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++   +     R ++ LGI HVGA  A++LA+ + S +              +    +  
Sbjct: 511 ALEASKQQPWHRQLYGLGIHHVGAVNAKALARAFPSAETLGMA-------AAEQPEVITA 563

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----------IENK 650
           V  +G  IA+++ +++    N   +  L     P      +               +  +
Sbjct: 564 VFGIGGEIAESLRQWFATAANGALLAELQALGIPLAAAEREQGVEGEGGGPGGAGHLSGQ 623

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGTL  + R +AQ  +   G  VS  +S+KT  ++ G   GSKL KA+ LGV +++
Sbjct: 624 TFVLTGTLPSLSRSQAQALIEAAGGKVSGSVSKKTSYVVAGAEAGSKLTKAEALGVAVLD 683

Query: 711 EEQFLFLLQQYNTT 724
           EE    LL++   T
Sbjct: 684 EEGLRALLEELEGT 697


>gi|227548037|ref|ZP_03978086.1| DNA ligase (NAD(+)) [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079891|gb|EEI17854.1| DNA ligase (NAD(+)) [Corynebacterium lipophiloflavum DSM 44291]
          Length = 689

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/710 (31%), Positives = 362/710 (50%), Gaps = 45/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
               ++   L  ++ +H D YY   + +I D+E+D L     A   A P+LA    P  P
Sbjct: 23  ADLHRQWDDLASQVRHHRDLYYN-GQQVISDAEFDKLFNNLVAFEEAHPELAV---PESP 78

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G  ++ +   VTH    +SL+ +++ E+L  ++ +              +  E KI
Sbjct: 79  TKEVGAPVSSAFADVTHLERMMSLDNVFSAEELADWLAKT----------PGPYLTELKI 128

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + YE G+ V AA RGDG  GED++A  + IP IP  L+ + PE++EVRGEV+I 
Sbjct: 129 DGLSIDLVYENGELVRAATRGDGRVGEDITANAKVIPDIPHRLTGDFPELLEVRGEVFIR 188

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
             DF  LN++ I  G KP+ANPRN A+G LR+ NP D+  R L    HG+G         
Sbjct: 189 PEDFPELNEQRIKEGGKPFANPRNTAAGGLRQKNPEDVKKRRLRMICHGIGAREGFSPAS 248

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+E  +K+   G PV+   R+A T + +    +     R    +++DG+V KVD  + Q+
Sbjct: 249 QFEAYEKLAEWGLPVSEYTRRAETANEVQESVDYWAEHRHDAIHEMDGVVIKVDSVATQR 308

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +R+PRW I++K+  ++ +T+LLDI++ +GRTG  TP A LEPV + G+ ++ ATL
Sbjct: 309 SLGATSRAPRWAIAYKYPPEEVTTKLLDIEVSVGRTGRATPFAVLEPVFVSGSTVSLATL 368

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+  +K            + + +GD V++++AGE+IP+V+  + + R    + F +P  
Sbjct: 369 HNQHEVKR-----------KGVLIGDTVVIRKAGEIIPEVLGPVADLRDGSEREFIYPKD 417

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +         +  A  RC    +C AQ  +RLK+  SR AF+IE LG++    
Sbjct: 418 CPACGTEL-----APAKEGDADWRCPNTRSCPAQLSQRLKYLASRGAFDIEALGEKGAID 472

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              S      +    D+F L       ++      G  + +   L  +++  R   L R 
Sbjct: 473 LIDS----GVLVDEGDLFDLTEEDLKKSSAYTTKAGNVNAAGKKLLANLDTARERELWRV 528

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +L IRHVG   AR+LA  Y S Q         +A              VG +IAQ+  
Sbjct: 529 LVALSIRHVGPTAARALAARYASMQALIDAPVADLADT----------DGVGLVIAQSFK 578

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +++    +   V+   K     +          +E   +V TGTL+   R +A+E +   
Sbjct: 579 DWFTVDWHRDIVDKWAKAGVRMVDDTTDAAPQTLEGLTVVVTGTLENFSRDEAKEAILSR 638

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           G   +  +S+KT  ++VG+N GSK +KA++LGV I+NEEQF  LLQ  + 
Sbjct: 639 GGKAAGSVSKKTSYVVVGENAGSKEDKARELGVPILNEEQFEQLLQTGSA 688


>gi|312144161|ref|YP_003995607.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus']
 gi|311904812|gb|ADQ15253.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus']
          Length = 670

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/697 (34%), Positives = 387/697 (55%), Gaps = 48/697 (6%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L ++I   +  Y+    P I D+E+D L +    +   FP+L  +   + P  ++GGE+ 
Sbjct: 16  LREKIRKAEYRYFVLDDPQISDAEFDKLMQDLLKLESQFPELVTA---DSPTQRVGGEVL 72

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               KV HS   LSL+  +N E+LR F  R+ +   ++D     + +E KIDG    IRY
Sbjct: 73  DEFEKVEHSTEMLSLDNSFNAEELRGFDQRVKKNTTERDYQ---YIVEHKIDGLSAVIRY 129

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           + G F   A RG+G  GE+++  ++ I ++P  L +     +E+RGE+Y+SK++F  +N+
Sbjct: 130 QGGSFQLGATRGNGEVGENITENMKTIRSLP--LKIEDKAELELRGEIYLSKSEFERINE 187

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
           + +   +KP+ANPRNAA+G +R+L+      R L+  ++ L   S    +   E+   + 
Sbjct: 188 KRLENEKKPFANPRNAAAGSVRQLDSKIAASRRLSILIYDLISHSNREFETHLEVFAYLE 247

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
             GF VN   ++A+    ++    E +  R +L ++IDGLV K++  +L+++LG  ARSP
Sbjct: 248 EQGFNVNWH-KKADDIGKVIEICQEWEEKRESLDFEIDGLVVKINNLNLREELGSTARSP 306

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW I++KF  +Q +TR+  I+I +GRTG LTP A LEPV I G+ ++ ATLHNED IK  
Sbjct: 307 RWAIAYKFPAQQKTTRVKSIEISLGRTGALTPTAVLEPVEIAGSTVSRATLHNEDEIKR- 365

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     +DIR+GD VLV++AG+VIP+VV +I  +R    + F  P  CP+C ++V 
Sbjct: 366 ----------KDIRIGDIVLVQKAGDVIPEVVKVIKEKRDGCEKEFEMPDHCPVCGTKVK 415

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           R          A  RCT  ++C AQ+ E++ HFVSRDA NIEG+G   +D   +++    
Sbjct: 416 RPEGE------AVTRCTN-ISCPAQRKEKILHFVSRDAMNIEGVGPALVDQLLEND---- 464

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            I    D++ L++         +N+   G+ S  N+ D+I + ++    R I++LGIRHV
Sbjct: 465 LIDDYGDLYFLKKHHL------QNLERMGEKSSQNVIDAIKQSKDREFFRVIYALGIRHV 518

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   AR+L+  Y S     +  N  +            +  +G +IA +I++F+   +N 
Sbjct: 519 GLGAARTLSDNYSSISQLMEASNEELE----------EIDEIGPVIADSIIDFFAEKQNR 568

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             +  L +        + +     +E  K VFTG+L    R + ++ V + G    + +S
Sbjct: 569 DLISRLRQAGINLSRENTEEKEKFLEGLKFVFTGSLNDFTRSEVKDLVEKAGGRSVSSVS 628

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            KTD +++GDNPGSK +KAQ+LG+KI++E +F  LL+
Sbjct: 629 SKTDYLVIGDNPGSKYQKAQELGIKILSESEFKELLE 665


>gi|55821530|ref|YP_139972.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMG
           18311]
 gi|55823458|ref|YP_141899.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus CNRZ1066]
 gi|81559086|sp|Q5LYL9|DNLJ_STRT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81560280|sp|Q5M382|DNLJ_STRT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|55737515|gb|AAV61157.1| DNA ligase [Streptococcus thermophilus LMG 18311]
 gi|55739443|gb|AAV63084.1| DNA ligase [Streptococcus thermophilus CNRZ1066]
          Length = 652

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/702 (31%), Positives = 365/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L  +++ +   YY    P + D+EYD L R    +    P+L ++   + P ++
Sbjct: 2   EKRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQA---DSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+     K +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRV-----KSEFPNADYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +
Sbjct: 114 SISLTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N +    G   +ANPRNAA+G LR+L+   +  R L  F +   + S      Q +
Sbjct: 172 FERINTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFY--QEASPTERLTQND 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAIQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++   +LL +D Q+GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R         PS CP 
Sbjct: 350 DYIT-----------EKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-AMPVPSQCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  FK
Sbjct: 398 CGSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFK 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +E     ++  ADI+ L      ++     + GF + S   LY +I   +  S E+ ++ 
Sbjct: 451 AE----LVKEVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLYG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA++++ L + + + +  A          + D  ++  V  +G++IA++I  ++
Sbjct: 501 LGIRHVGAKVSKQLLESFGTIKELA----------SADVQAIAAVDGLGEVIAKSIQRYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   ++      V+ S    +    + +  K +V TG L+ ++R +A+  +  LGA
Sbjct: 551 AKEEAQVLLKELESYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 611 KVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652


>gi|163757008|ref|ZP_02164114.1| DNA ligase [Kordia algicida OT-1]
 gi|161323012|gb|EDP94355.1| DNA ligase [Kordia algicida OT-1]
          Length = 665

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/709 (29%), Positives = 361/709 (50%), Gaps = 48/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   +++L++L  E+  H+  YY      I D E+D   +    +    P+     DPN 
Sbjct: 1   MRNIQEKLTALRDELREHNYNYYVLDNATISDYEFDMKLKELQELEAKHPEF---HDPNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG++  +   + H     SL+  ++ EDL  +  RI +       +++ +T E K
Sbjct: 58  PTLRVGGQITKNFNTIAHEYRMYSLDNSYSKEDLLDWEKRIEKILG---VSTVEYTCELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  + + YE GK + A  RGDG  G++V+  I+ I T+P  L  + P   ++RGE+ +
Sbjct: 115 YDGASMNLTYENGKLIKAVTRGDGFQGDEVTNNIKTIKTVPLQLKGDYPPKFDIRGEIIL 174

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
             + F  +N+E +A G  PY NPRN ASG L+  + +++  R L   ++ + K   +   
Sbjct: 175 PLDGFKKMNEERVANGEDPYMNPRNTASGSLKLQDSSEVAKRPLECLLYNI-KGERLPIA 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q+E L+K R  GF V    + A     I+ + N  ++ R  L Y+IDG+V KV+    Q
Sbjct: 234 TQFESLEKAREWGFKVPTVAKVAKNVDEILQFVNYWEANRHELKYEIDGVVIKVNNLQYQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +++PRW +++KF  +Q +T L +I  Q+GRTG +TPVA L+PV + G  +  A+
Sbjct: 294 EELGYTSKAPRWAMAYKFKAEQVATVLNEITYQVGRTGAITPVANLQPVLLAGTTVKRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I  L           DIR  D V V++ GE+IPK+V +  + R  D+    + +
Sbjct: 354 LHNADQIAKL-----------DIRERDTVFVEKGGEIIPKIVGVNFDLRPEDSTETVYAT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + + R          A H C     C+ Q + R++H++SR A +IEGLG + + 
Sbjct: 403 ECPECHTPLERKEGE------AQHYCPNVAGCTPQIVGRIQHYISRKAMDIEGLGGETVA 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +       I   AD++ L   Q     ++       + S  NL + I   + I  ER
Sbjct: 457 LLVQE----GLITNYADLYELTTAQVIPLERMA------EKSAENLINGIEASKKIPFER 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +++LGIR+VG  +A+ LAK+Y S        +N +          + V  +G  IA+++
Sbjct: 507 VLYALGIRYVGETVAKKLAKHYKSIDALMNASSNDL----------VNVDEIGVKIAESV 556

Query: 613 VEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            +F+    N+  +E L K            + ++  +  K  V +G  +K+ R++ ++ +
Sbjct: 557 AQFFAEDVNLQMIERLKKFGVQLEFSAEQLEGLTETLLGKSFVVSGVFEKVSRNELKKLI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
              G  VS+ +S KT  ++ GD  G SK EKA++L + I+ E++FL ++
Sbjct: 617 ENNGGKVSSSISSKTSFVVAGDKMGPSKREKAEKLNIPIITEDEFLNMI 665


>gi|329121050|ref|ZP_08249681.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965]
 gi|327471212|gb|EGF16666.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965]
          Length = 666

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/705 (32%), Positives = 371/705 (52%), Gaps = 46/705 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +   ++  L +E+ YH   YY   KP I D E+D + R        +P+L      + P 
Sbjct: 5   EIISKVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELITQ---DSPT 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG+      KV    P LSL   +N ++L +F   +         ++I +  E KID
Sbjct: 62  QRVGGKATGDFKKVEFKKPMLSLSNAFNGKELIEFDRSVKETLNT---DNIEYITELKID 118

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE+GK +    RGDG  GEDV+A ++ I +IP  +  N P  IE+RGEV++ +
Sbjct: 119 GLSMNLIYEEGKLIRGLTRGDGKVGEDVTANVKTIKSIPLYI-ENAPPYIEIRGEVFMPR 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           + F++LN++  A G  P+AN RNAASG +R+L+P    +R L+FF + +G+T  I  K Q
Sbjct: 178 SSFVSLNEKRDAAGIMPFANCRNAASGSIRQLDPNVTASRNLDFFAYSVGETEGIEIKNQ 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L  ++   F VN   ++ N+   ++   NE +  R  L YD DG+V KV++F  Q  
Sbjct: 238 ESLLNLLKKFHFKVNPNYKKINSIEKVIEIINEWQEKRHHLGYDTDGMVVKVNDFEQQNV 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++ P+W I++K+  ++A T + +I + +GRTG+LTP A L+ V I G ++  ATLH
Sbjct: 298 LGATSKDPKWAIAYKYPPEEAETVVENIIVTMGRTGVLTPSADLKSVQIAGTVVKRATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N ++I+            +DIR+GD V + ++GE+IP++  ++ N+R    + F  PS C
Sbjct: 358 NMNFIE-----------EKDIRIGDIVKIYKSGEIIPEISVVLKNKRTGKEKKFIMPSEC 406

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+ ++ R           A+RC     C     E L HF SRDA NIEGLG   +D  
Sbjct: 407 PLCKHKIYRTEGE------VAYRCINP-DCGGVIRENLIHFASRDAMNIEGLGPAVIDGL 459

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    I   AD + L++        I  I   G+ S  NL  SI   +N  L +F+
Sbjct: 460 LAYN----LIENIADFYELRK------DDIIQIERMGEKSAKNLLTSIENSKNRGLSKFL 509

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIRH+G + +  +++ +                 N    S+  V  +G+I A+ I +
Sbjct: 510 FALGIRHLGEKGSELISEKFKDIDVLM----------NASVDSIKSVSGIGNITAEHIYK 559

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +++N +N   +E L            K+  +  +   +V TG L  I R +A E +  LG
Sbjct: 560 YFKNEKNKKIIERLKNHGILMKLNERKSEGNAFKGHNVVLTGKLSNIGRREAGEIIKALG 619

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + + +++ T ++IVG+N GSKLEKA++ G+KI+NE  FL ++ 
Sbjct: 620 GNLQSTVTKTTTLVIVGENAGSKLEKAREKGIKIINENDFLKIIN 664


>gi|86157121|ref|YP_463906.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123723230|sp|Q2INT9|DNLJ_ANADE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|85773632|gb|ABC80469.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 687

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/711 (32%), Positives = 366/711 (51%), Gaps = 50/711 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + I   D  YY   +P++ D+EYD L     AI    P+L  +   + P  ++ G  +
Sbjct: 13  LRERIRAADHAYYVLDQPVLADAEYDRLMHELQAIEAEHPELVTA---DSPTQRVSGAPS 69

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               +V H  P LSL  + + ++L +F  R+ R     +  ++ + +EPK+DG  + + Y
Sbjct: 70  ERFERVVHREPMLSLGNVQSDDELHEFDARVRRLLGLPEGEAVGYVVEPKLDGLAVELVY 129

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAI------PTIPRVLSLNIPEIIEVRGEVYISKND 197
             G F   + RGDG +GEDV+A +R +        +P  L    P  +EVRGEV + K  
Sbjct: 130 RDGAFTGGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGTPPPRVEVRGEVLLFKEH 189

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N +++  G +P+ANPRNAA+G LR+L+      R L+F  +          +  +E
Sbjct: 190 FEAMNRQLVRAGDEPFANPRNAAAGTLRQLDWRVTARRPLSFVAYEALVPGGDPWRTHWE 249

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +   GF  N   R+      +++Y + M   R  LPYD DG+V KVD+   +++LG
Sbjct: 250 KLEALAAWGFETNPENRRCRGLGEVLAYRDRMAERRFELPYDTDGIVVKVDDLDWRRRLG 309

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++ PRW ++ K+  ++ +TR+  I   +GRTG+LTPV   +PV + GA++  ATLHNE
Sbjct: 310 AASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLSGAMVARATLHNE 369

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++            +DI  GD VLV+RAGEVIP+VV  +   R  + +PF FP+ CP+
Sbjct: 370 DEMRR-----------KDILEGDWVLVRRAGEVIPEVVKPLPERRTGEERPFRFPAECPV 418

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +RVVR+   K       +RCTG  AC AQ + R+ HF  R A +IEGLG++      +
Sbjct: 419 CGARVVREEGEK------VYRCTGA-ACPAQLVGRICHFAQRRALDIEGLGEKLAAGLVE 471

Query: 497 SEDPAFSIRIPADIFTLQRR---QQTSTTKIENILGF----GDVSVTNLYDSINKRRNIS 549
                  ++  AD++ +      Q  S  + E   G      + S  N+  ++ + R+ +
Sbjct: 472 RGQ----VKDFADLYAVPFEVWQQLFSRPRKEQDAGAARELPEKSAQNMVAALERSRSTT 527

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+F+LGI  VG   A +LA+++                   D  +L  V  VG   A
Sbjct: 528 LRRFLFALGIPQVGEATAATLARHFGDLARILDA----------DEEALKGVRDVGPETA 577

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
             I  + Q P+N   VE L                     K +V TG L  + R  A+  
Sbjct: 578 SEIRAWTQEPQNRRVVERL-LAAGVRPEPEVVEARGPFAGKTVVLTGGLSAMSRDDAKAE 636

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V + G  VS  +SRKTD+++ G+  GSKLEKA+ LGV+++ EE+F+ LL++
Sbjct: 637 VERRGGKVSGSVSRKTDLVVAGEEAGSKLEKARSLGVRVVGEEEFVRLLKE 687


>gi|291299865|ref|YP_003511143.1| DNA ligase NAD-dependent [Stackebrandtia nassauensis DSM 44728]
 gi|290569085|gb|ADD42050.1| DNA ligase, NAD-dependent [Stackebrandtia nassauensis DSM 44728]
          Length = 749

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/767 (29%), Positives = 350/767 (45%), Gaps = 84/767 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + AR+  + L  EI  H   Y++   P I D+EYDAL R   AI  A P LA     + P
Sbjct: 16  DAARERHTKLAAEIDRHRQLYHRDDAPQISDAEYDALMRELLAIEEAHPVLATQ---DSP 72

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+++     V H+    SL+  ++ E+L  ++ R+       +     +  E KI
Sbjct: 73  SQQVGGDVSELFASVRHAERLYSLDNAFSPEELTAWVERV-----TAEVPGEAYLCELKI 127

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGE 190
           DG  + + YE G  V  A RGDG +GED++  +R I +IP  L       +PE +E+RGE
Sbjct: 128 DGLAVNLTYENGVLVRGATRGDGTTGEDITPNVRTIASIPEKLKGTKKYPVPEFVEIRGE 187

Query: 191 VYISKNDFLALNDEMIAVGR--------------------KPYANPRNAASGILRRLNPT 230
           V++S   F  LN + +A                         YANPRNAA+G LR+ +PT
Sbjct: 188 VFMSTESFEKLNADRLAENERITAANEERKAEGKRLQKLLPLYANPRNAAAGSLRQKDPT 247

Query: 231 -DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
              +R L+  V+G G         Q +    ++  G P ++  +  +T  G+  Y     
Sbjct: 248 ITASRALSMTVYGFGARRGFEPTHQSQGYAALKAWGLPTSSYFKVLDTVEGVTEYIEHYG 307

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  + ++IDG+V K+D+ ++Q++LG   R+PRW I++K+  ++ +T L DI + +GRT
Sbjct: 308 EHRHDIEHEIDGVVIKIDDIAVQRRLGSTTRAPRWAIAYKYPPEEVTTTLRDIKVSVGRT 367

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G  TP A LEPV + G+ +  ATLHN+D +K            + + +GDRV++++AG+V
Sbjct: 368 GRATPYAVLEPVRVAGSEVEFATLHNQDIVKA-----------KGVLIGDRVIIRKAGDV 416

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IP+V+  +   R  D   F  PS CP C + +      +  +     RC    +C AQ  
Sbjct: 417 IPEVLGPVEGARTGDEHEFVMPSNCPECGTEL-----RQMSEGDIDLRCPNARSCPAQLR 471

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKS-EDPAFSIRIPADIFTLQRRQQT--------- 519
           ERL +   R   +I+GLG        +  E     +    D+F L   Q           
Sbjct: 472 ERLSYLTGRSCLDIDGLGYVACTALVQPLEPKQPPLADEGDLFNLTMEQLLPIKSLVLDP 531

Query: 520 --STTK-------------IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
                K                  G      T + + I   +   L R I  L IRHVG 
Sbjct: 532 DSGLPKKDPKTGKDKEVTYFATQDGAPKAGATKMLEGIEAAKQQELWRIINGLSIRHVGP 591

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             AR+LA  +             +A           V  VG  IA A+ +++    ++  
Sbjct: 592 VAARALATEFGDLDAIRDADEERLAA----------VDGVGPTIATAVKQWFAEDWHVEI 641

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           +E         +    +     +    +V TG+L+   R  A E V   G  VS  +S+K
Sbjct: 642 LEKWRAAGVRFVEERPEAGERHLAGLTVVITGSLEGWTRDGAAEAVRVRGGKVSGSVSKK 701

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           T  ++VGD+PGSK +KA +LGV I++ E F  LL +    +R  + D
Sbjct: 702 TSFVVVGDSPGSKYDKAVKLGVPILDTEGFATLLSEGPDAVRPIEAD 748


>gi|310657889|ref|YP_003935610.1| DNA ligase [Clostridium sticklandii DSM 519]
 gi|308824667|emb|CBH20705.1| DNA ligase, NAD(+)-dependent [Clostridium sticklandii]
          Length = 683

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/712 (31%), Positives = 369/712 (51%), Gaps = 50/712 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E+++ +    +++ L + I +H   YY    P I D+++D L +   A+   +P+     
Sbjct: 3   ESINEKDIYNKINELRERIEHHSILYYVQDSPEISDADFDMLMKELIALEEKYPEYITE- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  +IGGE      +V HS+  +SL   ++ +DL  F +R+ +   K +     + 
Sbjct: 62  --DSPTQRIGGEALSKFDQVRHSVQMMSLSNAFSKQDLLDFDSRVRQMIPKPE-----YV 114

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           LE KIDG  + + YEKGKF   A RGDG  GEDV+  ++ I +IP  L   +   + VRG
Sbjct: 115 LEFKIDGLSVALTYEKGKFKVGATRGDGVVGEDVTKNLKTIKSIPMKLKEEV--SLVVRG 172

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVYI K  F  LN +    G   +ANPRNAA+G LR+L+      R L+ F+  L +  +
Sbjct: 173 EVYIPKEKFKELNLQQEENGLALFANPRNAAAGSLRQLDSNITAKRPLDIFIFNLQEIID 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L+ ++ LG  V+      ++   +    +     R  L ++IDG+V KV++
Sbjct: 233 KDIYTHSEALEYLKALGLKVSPMRNVYSSMEAVWDEISVWHDKRHELDFEIDGIVIKVND 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + +  LGE A++PRW I++KF  ++  T++ DI +Q+GRTG +TP A L PV I G+ +
Sbjct: 293 LAQRAMLGETAKAPRWAIAYKFPAERQLTQIEDIIVQVGRTGTITPTAILTPVRIAGSTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHNED+IK            +DI++ D   +++AG++IP+V ++ +++R      F
Sbjct: 353 SRATLHNEDFIKA-----------KDIKIKDWAYIQKAGDIIPEVYEVDISKRTGVEYEF 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C +  VR          AA +C   + C AQ    + HFVS+ A +I+ LG+
Sbjct: 402 KMPETCPECHTPTVRVEGE------AALKCPN-ITCPAQIKRGIIHFVSKSAMDIDKLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +   ++    A  I   ADI+ L   +  +          G  SV+NL +SI + +  
Sbjct: 455 AIVIQLYE----AGLINDMADIYYLNPDEILAL------PRMGSKSVSNLMNSIEESKTA 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L+R +  LGIR++G + A++LA  Y   +   Q               L+++  +G+ +
Sbjct: 505 GLDRLLIGLGIRYIGTKAAKTLASVYSDIEQIKQA----------SIEELLQIDEIGEKM 554

Query: 609 AQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           AQ+I EF++   N+  +E L    VS S+ +         E  K V TGTL+ ++R +A 
Sbjct: 555 AQSIFEFFKVEENLNLIERLKLAGVSMSVDKKNSQQKPIFEGMKFVLTGTLETLKRDEAA 614

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + +     S+ +S+ T  +I G+  GSKL+KA  LGV ++NEE F  LL+
Sbjct: 615 VLIEERLGKTSSSVSKNTTAVIAGEEAGSKLDKAIALGVAVINEEVFKKLLK 666


>gi|320105506|ref|YP_004181096.1| NAD-dependent DNA ligase [Terriglobus saanensis SP1PR4]
 gi|319924027|gb|ADV81102.1| DNA ligase, NAD-dependent [Terriglobus saanensis SP1PR4]
          Length = 694

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/737 (32%), Positives = 375/737 (50%), Gaps = 73/737 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S EQ     S L  EI +H+  YY   KP I D++YDAL     A+    P+L     P
Sbjct: 1   MSPEQ---RASELRAEIEHHEHAYYVLDKPEISDAQYDALVNLLKALETEHPELV---TP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++GG+      KV HS P LSL+  +N  +LR +  R+       D  ++ +T E
Sbjct: 55  ESPTQRVGGKPREGFAKVAHSRPMLSLDNAYNEAELRAWAERVTTSLPASD--AVEYTCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI------PEII 185
            K+DG  + + YE G+ V    RGDG  GEDV++ +R I ++P  ++         P   
Sbjct: 113 YKLDGLSLALHYENGQLVRGVTRGDGSVGEDVTSNVRTIRSVPLRIAAAKLKAAGLPGTF 172

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEV + ++ F  LN +  A G+   ANPRNAA+G +R + P+ +  R L+F+ + L 
Sbjct: 173 EVRGEVVMPQSAFEELNRQREAAGQAAAANPRNAAAGTIRTIEPSIVAQRRLDFYAYFLL 232

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +  +   K Q   L  +R  GF VN   R   T   ++ +  + ++ R  L Y+IDG+V 
Sbjct: 233 RDGDTLLKSQQATLDALRATGFRVNAQARTVGTIDEVLGFIAQAEAERDGLGYEIDGVVI 292

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  +LQK+LG   ++PRW I++KF  +   T+L  +  Q+GRTG LTPVA L+P+ IG
Sbjct: 293 KVNATALQKRLGFTGKAPRWAIAYKFPARAGVTQLRGVIFQVGRTGKLTPVADLQPIFIG 352

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP- 423
           G  +T ATLHN D I+ L            +++GD V V+R G+VIPK+  ++ ++ H  
Sbjct: 353 GTTVTRATLHNADEIERL-----------GLKIGDHVSVERGGDVIPKITHVVEDKIHAR 401

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             +   FP+ CP C   VVR+            RC    +C A+  E L+HF SR   NI
Sbjct: 402 GTEEIVFPTVCPRCGEPVVREEGE------VDWRCVNA-SCPARLEEELRHFASRGVMNI 454

Query: 484 EGLGKQQLDFFF----------------------KSEDPAFSIRIPADIFTLQRRQQTST 521
           EGLG+  +                          ++      +   ADI+ L   Q    
Sbjct: 455 EGLGESLVAQLLGHTVAEAVDATAGVGEGEESVAEAPTREALVHSVADIYGLTLEQLMGL 514

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            +I         S  +L   I K ++  L R +  LGIRHVG   A++LA+ + S     
Sbjct: 515 ERIGQ------KSAESLLAEIEKSKSAPLSRVLLGLGIRHVGERTAQTLAEEFGS----- 563

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
             ++ +I+   +D     RV  VG  +A+AI E++ N +N+  V+ L K+   ++   ++
Sbjct: 564 --MDALISATEEDLT---RVNDVGPKVAEAIREWFANEKNLLLVQRL-KDAGLTMTAEKR 617

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
              +++     V TGTL  + R  A+E +   G  VS  +S+KT  ++ G++ GSKLEKA
Sbjct: 618 ERGTQLAGMTFVLTGTLPTLTRDTAKEKIEAAGGKVSGSVSKKTTYVVAGEDAGSKLEKA 677

Query: 702 QQLGVKIMNEEQFLFLL 718
           ++LG+ +++E   L +L
Sbjct: 678 RELGIAVLDEAGLLEML 694


>gi|34540958|ref|NP_905437.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83]
 gi|81417286|sp|Q7MV47|DNLJ_PORGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|34397273|gb|AAQ66336.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83]
          Length = 669

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/705 (31%), Positives = 357/705 (50%), Gaps = 49/705 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L + +  H+  YY  S P I D EYDA+ ++ + +   +P+    + P+ P +++G
Sbjct: 10  RIEELRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEW---DSPDSPTHRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +       V H  P LSL   +N +++  F  R+    Q           E K DG  I
Sbjct: 67  SDKTEGFASVRHDRPMLSLSNTYNYDEIGDFYRRVSEGLQ---GAPFEIVAELKFDGLSI 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++ YE G  V A  RGDG  G+DV+A +R I ++P  L   + P ++EVRGE+ +   +F
Sbjct: 124 SLIYEDGMLVRAVTRGDGIMGDDVTANVRTIRSVPLRLRGDDYPRMLEVRGEILLPFKEF 183

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N +  A G   +ANPRNAASG +++L+P  +  R L+ + + L  + E  A+  Y+ 
Sbjct: 184 DRINAQREAEGEPLFANPRNAASGTIKQLDPHIVAGRNLDAYFYYL-YSDEPLAENHYDR 242

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L + R  GF V++ V    +   + ++ +   + R TLP   DG+V KV+  + Q  LG 
Sbjct: 243 LMQARQWGFKVSDAVTLCCSKEEVYAFIDRFDTERLTLPVATDGIVLKVNAPAQQDLLGF 302

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++K+  ++  TRL  +  Q+GRTG +TPVA L+PV I G ++  A+LHN D
Sbjct: 303 TAKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVANLDPVLISGTVVRRASLHNAD 362

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           +I             +D+  GD V V++ GE+IPK+V +  + R  D +P  F   CP C
Sbjct: 363 FI-----------AEKDLHEGDFVYVEKGGEIIPKIVGVDTDARSIDGRPIVFTVLCPDC 411

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            + +VR+         AA+ C     C  QQ  RL+H+  R   +I  +G + ++  +  
Sbjct: 412 ATPLVREQGE------AAYYCPNAEGCPQQQKGRLEHYCGRKTADI-NIGPETIELLYSR 464

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD + L   Q  +        GF   +   L DSI   +    +  +F L
Sbjct: 465 NM----IRNVADFYALTEEQLLTL------PGFKKRAAAKLLDSIEASKARPYQAILFGL 514

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ LA  Y S    A   +  +          +++  +G+ IA A++ F+ 
Sbjct: 515 GIRFVGETVAKKLAAVYPSIDALAAATSEEL----------VQIDEIGERIAAAVLHFFS 564

Query: 618 NPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             +N   +E L    VS         VS+ +  K +V +GT +K  R + +  V   G  
Sbjct: 565 LRQNRELIERLRLAGVSLEAETVSVAVSNRLAGKTVVISGTFEKRSRDEYKAMVEDNGGR 624

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++  +S KT  I+ G + G SK EKA++LGV++M+EE+FL L+++
Sbjct: 625 MAGSVSSKTSFILAGSDMGPSKREKAEKLGVRLMSEEEFLRLIEE 669


>gi|256852262|ref|ZP_05557648.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN]
 gi|260661706|ref|ZP_05862617.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN]
 gi|282934844|ref|ZP_06340077.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
 gi|297205571|ref|ZP_06922967.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16]
 gi|256615308|gb|EEU20499.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN]
 gi|260547453|gb|EEX23432.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN]
 gi|281301075|gb|EFA93386.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
 gi|297150149|gb|EFH30446.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16]
          Length = 669

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/717 (30%), Positives = 373/717 (52%), Gaps = 54/717 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+ + A++E+ +L ++++   + YY    P + D+ YD   ++   +   FP+L   
Sbjct: 1   MAKLNKKNAQEEIETLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQKLVELEKQFPELV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GGE+   L KV H +P LS+  +++ ++L +F  RI +         + +
Sbjct: 59  -TPDSITQRVGGEIKSDLGKVEHQVPMLSMGDVFSKDELFEFDQRIQKLVG----GPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK + A+ RG+G  GEDV+  ++ I  IP++L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYVDGKLIQASTRGNGRIGEDVTKNVQYIDDIPKILPEKL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  FL LN E    G   +ANPRNAA+G LR+L+P     R L+ F++      
Sbjct: 172 GECYMGKAAFLKLNTERDENGEAIFANPRNAAAGSLRQLDPKVTKKRNLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +     Q++ +Q+M  LGF  N   R+      + +Y +E  S R +L Y IDG+V KVD
Sbjct: 232 K-EITSQHQAIQQMSKLGFHTNETGRKLANLDEVFAYIDEYTSKRDSLSYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQKQLG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PV + G  
Sbjct: 291 DLTLQKQLGNTVKVPRWEIAYKFPPEEQETIVHEIVWTVGRTGVVTPTAVMDPVELAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A LHN D +K            +D+R+GD V + +AG++IP++ ++++++R  ++Q 
Sbjct: 351 VSRAVLHNPDLLK-----------QKDVRIGDTVKLHKAGDIIPEISEVVLSKRPANSQV 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C   +V            A RC    AC AQ  E + HF SR A +I GLG
Sbjct: 400 YEIPTECPSCGQSLVHLEGE------VALRCINP-ACPAQIEEGIIHFASRPAMDIMGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +    + +     ++  AD++ L             +  FGD S++NL  +I+  R 
Sbjct: 453 PKIVRQLIQHD----LVKDVADLYHLTADDLA------ELDHFGDKSISNLLTAIDNSRQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +  LGI HVGA+ A  + + + +     Q   + +            +  +G+ 
Sbjct: 503 NSVELLLNGLGIDHVGAKAALLIVQRFKNLNKIMQASVSDLTA----------IDTIGET 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           IA++I  ++        V+ L+               E+ V +  +NK +V TG L    
Sbjct: 553 IAESITTYFAQASVQKLVQELIDSGVNIDYLGEDVSEEEIVDNFFKNKTVVLTGKLAHFT 612

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +  + +  LGA V++ +S+KTD +I G + GSKL KA+ L + ++ EE+ +  +Q
Sbjct: 613 RSEFTKKLESLGAKVTSSVSKKTDYVIYGTDAGSKLTKAESLKIALLTEEEAIEKIQ 669


>gi|302524940|ref|ZP_07277282.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
 gi|302433835|gb|EFL05651.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
          Length = 707

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/716 (31%), Positives = 346/716 (48%), Gaps = 43/716 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R+   +L +EI  H   YY    PII D ++DAL      I   +P L     P+ 
Sbjct: 11  PADVRERHGALAEEIRGHQFRYYVLDSPIISDGQFDALLGDLQKIEDEYPALV---TPDS 67

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +GG  +       H    LSL+ ++  E+   ++ R+ +     +  S  +  E K
Sbjct: 68  PTQNVGGTFSTEFTAHDHLERMLSLDNVFTAEEFLAWVERVEK-----EIGSAEYLAELK 122

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRG 189
           IDG  I + YE GK      RGDG +GEDV+  IR +  +P  L+      +P+++EVRG
Sbjct: 123 IDGLAINLLYENGKLTRGLTRGDGRTGEDVTLNIRTLDQVPDRLTGTDEFPVPKLVEVRG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           EVY    DFL LN +M+  G+ PYANPRN A+G LR+ +P     R L    HGLGK   
Sbjct: 183 EVYFRVEDFLELNAKMVEAGKLPYANPRNTAAGSLRQKDPKITRERRLRLICHGLGKRDG 242

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q      +   G PV+   R   T   +  +       R    ++IDG+V KVD+
Sbjct: 243 FEPVTQSHAYDALAAWGLPVSPYTRVLRTGKELTEHIAYWGEHRHDAEHEIDGVVIKVDQ 302

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +R+PRW I++K+  ++A T LLDI + +GRTG +TP A  EPV + G+ +
Sbjct: 303 VALQRRLGTTSRAPRWAIAYKYPPEEAITMLLDIQVGVGRTGRVTPFAVTEPVKVAGSTV 362

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN++ +K            + + +GDR+++++AGEVIP+V+  +V+ R  D + F
Sbjct: 363 ARATLHNQEEVKR-----------KGVLIGDRIVIRKAGEVIPEVLGPVVDARTGDEREF 411

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C +++         +     RC     C AQ  ERL H   R AF+IE LG 
Sbjct: 412 VMPTECPECGTKL-----AYQKEGDKDIRCPNSQFCPAQLRERLFHLAGRGAFDIEVLGY 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +           A  +    D+F L               G    +   L  +++  ++ 
Sbjct: 467 EAAVALLD----ARVVADEGDVFDLNEESLAEVELFRTKAGDLSANARKLLVNLDSAKDR 522

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L + I +L IRHVG   A++LA+ + S Q         +A           V  VG  I
Sbjct: 523 PLWKVIVALSIRHVGPTAAQALAREFGSLQRIEDTTEEELA----------DVDGVGPTI 572

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A A+ E+++   +   VE   +         ++++   +E   +V TG+L    R +A+E
Sbjct: 573 AHAVQEWFEVDWHREIVEKWRRAGVRMEEERDESIPRNLEGLSIVVTGSLDGFSRDEAKE 632

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            +   G   +  +S+KT  ++VGD PGSK +KA QL V +++E  F  LL++    
Sbjct: 633 AIMARGGKAAGSVSKKTSFVVVGDAPGSKYDKAVQLKVPVLDENGFRALLERGPEA 688


>gi|312863154|ref|ZP_07723392.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396]
 gi|322516268|ref|ZP_08069198.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC
           49124]
 gi|311100690|gb|EFQ58895.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396]
 gi|322125241|gb|EFX96614.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC
           49124]
          Length = 652

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/702 (31%), Positives = 363/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L  +++ +   YY    P + D++YD L R    +    P+L ++   + P ++
Sbjct: 2   EKRMKELVSKLNQYAKEYYTEDNPSVSDADYDKLYRELVDLEVEHPELVQA---DSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+   +   D     +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRVKDEFPNAD-----YMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +
Sbjct: 114 SISLTYVDGVLQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N +    G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q +
Sbjct: 172 FERINIQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFLY--QEASPTERLTQND 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDDLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    LL +D Q+GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P+ CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-PMEVPTQCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  FK
Sbjct: 398 CGSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFK 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +E     ++  ADI+ L      ++     + GF + S   LY +I   +  S E+ ++ 
Sbjct: 451 AE----LVKDVADIYGL------NSQDFLQLEGFKEKSAEKLYSAIQVSKENSAEKLLYG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA++++ L + + S Q  A      IA           V  +GD+IA++I  ++
Sbjct: 501 LGIRHVGAKVSKQLLEAFGSIQELASADVEAIAA----------VDGLGDVIAKSIQRYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   ++      V+ S    +    + +  K +V TG L+ ++R +A+  +  LGA
Sbjct: 551 AKEEAQVLMKELESYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 611 KVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652


>gi|194333271|ref|YP_002015131.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271]
 gi|254781391|sp|B4S4Y6|DNLJ_PROA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194311089|gb|ACF45484.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271]
          Length = 675

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/716 (31%), Positives = 366/716 (51%), Gaps = 51/716 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A KE++ L  E++ H+  YY  ++P I D  +D    R  A+  AFPDL     P
Sbjct: 1   MQRKDALKEIARLRDELNRHNYRYYVLAQPEISDYAFDQELERLIALEKAFPDLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE+      VTH  P  SL   +++E++ +F  R+ +   ++   +  F  E
Sbjct: 58  DSPSQRVGGEITKEFPTVTHRQPMRSLSNTYSLEEVEEFYARVLKLLPEEAGENPEFVAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--------E 183
            K DG  +++ Y  G  V  A RG+G  G+D++  IR I ++P  L              
Sbjct: 118 LKFDGVAVSLLYRDGFLVQGATRGNGVEGDDITPNIRTIGSVPLQLRGGAAMAAEQYGGR 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            IEVRGEV++ K+DF ALN+       + +ANPRNA +G L+  +  ++ R    FV   
Sbjct: 178 EIEVRGEVFMRKDDFAALNEGRPE--EEQFANPRNATAGTLKLQDSAEVARRKMMFVAYY 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               +  +    + LQ++  +GF          +F  I  +    +  R TL YDIDG+V
Sbjct: 236 LTDPQCRSMQHVQRLQRLEEMGFYTGGHYSTCRSFDEIRDFIGRWEVDRLTLQYDIDGIV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K++  +   +LG  ++SPRW I++K+  +QA T L D+  Q+GR G +TPVA LE V +
Sbjct: 296 LKLNNPAFWDELGATSKSPRWAIAYKYPAEQAETVLNDVVFQVGRLGTITPVAELEAVRL 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  +TLHN D I+ L           D+R+GDRV+++++GE+IPKV+ ++   R  
Sbjct: 356 AGTTVKRSTLHNFDEIRRL-----------DVRIGDRVVIEKSGEIIPKVIRVVPGTRRE 404

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+   + PS CP+C + ++   N        +  C    +C AQ   R+ HF SR+A +I
Sbjct: 405 DSSEIAIPSHCPVCGTALLHPENE------VSWYCPNSQSCPAQVKARILHFASRNAMDI 458

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           + LG+  ++           +    D++ L         ++ ++    D S  NL  +I 
Sbjct: 459 KSLGESLVEQLV----HNGLVADSGDLYRLTA------DEVSHLDRMADKSAMNLLKAIE 508

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K R    ER +++LGIRHVG   AR LA  Y S    A          +     L  V  
Sbjct: 509 KSRTREYERVLYALGIRHVGLATARELAAAYHSIDLLA----------SAALEELSCVAD 558

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           +G +IAQ++ +F++NP  +  VE L    +  +    +  V+   E  K++FTGTL++  
Sbjct: 559 IGPVIAQSVHDFFRNPDALALVEKLRTAGLRLAASAPKALVNRNFEGMKVIFTGTLERHS 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A   V Q G      LSRKTD+++ G +PGSKL+KA +LGV+++ EE+F  +L
Sbjct: 619 RDDAAALVAQRGGKEVKSLSRKTDLVVAGKDPGSKLQKALKLGVRVIGEEEFEAML 674


>gi|89069525|ref|ZP_01156869.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516]
 gi|89044860|gb|EAR50950.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516]
          Length = 739

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/723 (39%), Positives = 416/723 (57%), Gaps = 60/723 (8%)

Query: 41  PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100
           PI+ D+ YDALKRR  A+   FP+L R+   + P  ++G        KVTH +  LSL  
Sbjct: 30  PIMDDAAYDALKRRNAALEARFPELMRA---DSPTGQVGAAPAAGFGKVTHRVRMLSLLN 86

Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160
            +   D+R F   + R+     D  + +T EPKIDG  +++RYE G+ V AA RGDG +G
Sbjct: 87  AFEEADIRDFDDGVRRYLGLAADAPLRYTAEPKIDGLSLSLRYEDGRLVQAATRGDGTTG 146

Query: 161 EDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
           E+V+   R I  IP  L    P+++EVRGEVY+S  DF ALN        K +ANPRNAA
Sbjct: 147 ENVTDNARTIDDIPDRL-EGAPDVLEVRGEVYMSHADFAALNARQSEAAGKTFANPRNAA 205

Query: 221 SGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFH 279
           +G LR+L+P     R L FF +  G+ S   A+ Q   ++++  LGF VN   R  +   
Sbjct: 206 AGSLRQLDPEITRARPLRFFAYAWGELSAPLAETQMGAIERLGALGFQVNPLTRLCDGPD 265

Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL 339
            ++++Y  +++ R+TL YDIDG+VYKVD+ +LQ +LG R+ +PRW  +HKF  + A TRL
Sbjct: 266 KMIAHYRAIEAQRATLGYDIDGVVYKVDDLALQSRLGFRSTTPRWATAHKFPAELAWTRL 325

Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGD 399
             I+IQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G  ASG  +RGG+DIR GD
Sbjct: 326 ERIEIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAGRAASGDEIRGGKDIREGD 385

Query: 400 RVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459
            V V RAG+VIPKV D+ + +R  DA P+ FP  CP C S  VR+      +  A  RCT
Sbjct: 386 WVQVYRAGDVIPKVADVDLAQRPADAAPYVFPETCPECGSEAVRE------EGDAVRRCT 439

Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
           GGL C AQ +E+LKHFVSR AF+IEGLG +Q++ F+  E     I  PADIFTL+ R   
Sbjct: 440 GGLVCPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFYHDE----WITEPADIFTLRDRYGP 495

Query: 520 S-TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
              T+++N  G+G+ S  NL+D+I +RR I+L R +F+LGIRHVG   A  LA+++ +++
Sbjct: 496 GKLTQLKNREGWGEKSAENLFDAIEERRTIALARLVFALGIRHVGEVAASDLARHFSTWE 555

Query: 579 NFAQEINN-------------------------------------------IIAHNNDDW 595
                ++                                            +       W
Sbjct: 556 ALVATVDAAAPAAHRVQAAEAALLAERAAARDEGRRARLAEVRDRVWAEPPLPEGARAAW 615

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
             ++ +  +G  +A+++V          +++ L   ++      +    S +  K +VFT
Sbjct: 616 DEIVGIEGIGATVARSLVLTMAQEAERASIDRLAAGLTIE-PAEQVATDSPVAGKTIVFT 674

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G+L+K+ R +A+     LGA VS  +S KTD+++ G   GSK +KA +LG++ ++E+ +L
Sbjct: 675 GSLEKMTRAEAKARAEALGAKVSGSVSAKTDLVVAGPGAGSKGKKAAELGIETIDEDAWL 734

Query: 716 FLL 718
            L+
Sbjct: 735 ALI 737


>gi|320334549|ref|YP_004171260.1| DNA ligase [Deinococcus maricopensis DSM 21211]
 gi|319755838|gb|ADV67595.1| DNA ligase [Deinococcus maricopensis DSM 21211]
          Length = 671

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/708 (31%), Positives = 350/708 (49%), Gaps = 45/708 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
                 L Q I +H+  YY+   P I D+EYDAL R   A   A P+      P  P  K
Sbjct: 3   EARYRELIQTIQHHNRLYYEQDTPEISDAEYDALMRELRAAEAAHPEWI---TPESPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDG 136
           +GG  + +   VTH  P  SL+ ++N E+L  +  ++ R      D     +T E KIDG
Sbjct: 60  VGGAPSSAFQPVTHPTPMTSLDNVFNDEELTDWGAKLARALGAAPDTADYAYTCELKIDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G   +AA RG+G  GE V+  +  IP IPR L   +   +EVRGEVY+S+ 
Sbjct: 120 LSVNLYYVDGVLQWAATRGNGVVGEIVTEQVLTIPEIPRTLP-GLKGELEVRGEVYLSRE 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +F + N     +G     NPRN A+G LR+ +P +   R L   ++ LGK   + A+ Q+
Sbjct: 179 EFASYNALAEELGLPLLKNPRNGAAGALRQKDPKETAKRRLRAILYALGKRDGVPARTQW 238

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L  +   GFP +    +        +Y+  M + R+ LP+D DG V K+D+   Q+  
Sbjct: 239 DVLTWLAEQGFPTSAYSERVQGLPAAAAYHARMVADRANLPFDADGTVIKLDDLRAQEDA 298

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I++KF  ++  T+LL I I +GRTG L P+A LEP  I G+ ++ ATLHN
Sbjct: 299 GFTSRAPRWAIAYKFPVEEVQTKLLSITINVGRTGKLAPLAHLEPRLIEGSTVSKATLHN 358

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED+I+ L           D+R+GD VLV++AG VIP++V  +   R   ++PF FP+ CP
Sbjct: 359 EDFIRNL-----------DLRIGDTVLVRKAGGVIPEIVRNLTELRADHSEPFEFPTHCP 407

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C    VR       +  A   C    AC AQ  ERL++FVSR A +I GLG++ ++   
Sbjct: 408 ECGHAAVR------AEGDANTYCVNP-ACPAQAYERLRYFVSRGAMDIRGLGEKLIEQLL 460

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       +R  AD ++L   Q     +             N+   + + +   L R + 
Sbjct: 461 Q----GGLVRDAADFYSLTEAQLAGLERSGT------KKAQNVLRELEESKKQPLWRLVN 510

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LG+  VG   A+ L + + S           IA           +  VG+ +AQ++   
Sbjct: 511 ALGMPGVGERNAQVLTRAFPSLDALLAATPEQIA----------SIHGVGETLAQSVHAA 560

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             +      +  L      ++   +     ++     V TGTL +  R   + ++  LGA
Sbjct: 561 LHDATMTDLLGRLRAADLNTVEEVDAPQGEQLAGTTFVITGTLSRP-RDVFKAHLESLGA 619

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +S  +++KT  ++ G++ GSKL+KA++ GV I++E     LL + + 
Sbjct: 620 RISGSVTKKTTYLLAGEDAGSKLDKARENGVTILDEAALGALLTERDA 667


>gi|308176651|ref|YP_003916057.1| DNA ligase [Arthrobacter arilaitensis Re117]
 gi|307744114|emb|CBT75086.1| DNA ligase [Arthrobacter arilaitensis Re117]
          Length = 767

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/772 (29%), Positives = 381/772 (49%), Gaps = 70/772 (9%)

Query: 1   MKKRQLIPIEALS--IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + ++ + P+E  +   E  +     L ++I  H D YYQ   P++ D EYDAL      +
Sbjct: 10  VSEKDVAPVETTNVPPEADKTRYDQLVEQIRAHRDAYYQNDAPLVSDVEYDALFHELQLL 69

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
              +P LA     + P  ++GGE++ +   VTH+    SLE ++++++L  ++ R     
Sbjct: 70  EATYPILAGQ---DSPTQEVGGEVSAAFASVTHASRMYSLEDVFSLDELEAWLERAQANA 126

Query: 119 QK-KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
           ++      + +  E KIDG  + + Y  GK V AA RGDG +GEDV+     I  IP+ L
Sbjct: 127 ERLHPQTPVRWLCEVKIDGLALNLTYRDGKLVRAATRGDGTTGEDVTHNALTISDIPQQL 186

Query: 178 -SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
                P   EVRGEV+I+  DF   N+ +IA G+ P ANPRNAA+G LR+ +P     R 
Sbjct: 187 EGSGWPAEFEVRGEVFIATEDFNKFNEALIAQGKAPLANPRNAAAGSLRQKDPAQTAKRP 246

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L  FVHGLG++ +     Q +  + MR  G PV+   R  ++      Y  E    R  L
Sbjct: 247 LRMFVHGLGRSRDFKLTEQSQAYELMRGWGLPVSPYGRVVDSRQAAKDYIAEHGEKRHDL 306

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            +DIDG+V KVD+ + Q+QLG  +R PRW +++K+  ++  T+LLDI +Q+GRTG +TP 
Sbjct: 307 IHDIDGIVIKVDDLATQEQLGYTSRVPRWAVAYKYPPEEVHTKLLDIQVQVGRTGRVTPF 366

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
             +EPV + G+ +  ATLHN++ +K            +++++GD +++++AG+VIP++V 
Sbjct: 367 GVMEPVLVAGSTVARATLHNQEVVKA-----------KNVKIGDTIILRKAGDVIPEIVG 415

Query: 416 IIVNERHPD--AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
            ++  R  +   + F  P+ CP C   +         +     RC    +C AQ  ER+ 
Sbjct: 416 PVLPLREGNDELRDFIMPTECPSCGQPL-----APAKEGDVDIRCLNAESCPAQLTERVA 470

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPA-------------FSIRIPADIFTLQRRQQ-- 518
           +   R A +IE LG +                           ++  A++F L+ + +  
Sbjct: 471 YLGGRSALDIEALGYEAAAALTSGPGEDPATLGGIILPAGPGPLKNEAELFNLKDKLEEL 530

Query: 519 -------------TSTTKIENILGFG-----------DVSVTNLYDSINKRRNISLERFI 554
                          T K E +  F              S   L D + K ++  L R +
Sbjct: 531 GEVKVWREKRVKGEGTGKFELVPYFYSKATAKKPSAPTKSTMKLLDELEKAKDNPLWRVL 590

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +L IRHVG   +R++A  Y S     + ++     + +    L  +  VG IIA+A+V+
Sbjct: 591 VALSIRHVGPNASRAIATRYGSMDALLEVLD-----SGNAEAELSEIDSVGSIIAEALVD 645

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +++   +   V +            ++N++  +E   +V TGTL+   R  A+E +   G
Sbjct: 646 WFKVDWHREIVASWQAAGVKMQDEQDENITKNLEGLAIVVTGTLENYSRDTAKEAIIVRG 705

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
              +  +S+KTD ++ G+  GSKL+KAQ LGV +++E  F  LL+Q     R
Sbjct: 706 GKATGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEAGFGVLLEQGPDAAR 757


>gi|284992468|ref|YP_003411022.1| DNA ligase, NAD-dependent [Geodermatophilus obscurus DSM 43160]
 gi|284065713|gb|ADB76651.1| DNA ligase, NAD-dependent [Geodermatophilus obscurus DSM 43160]
          Length = 716

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/721 (30%), Positives = 362/721 (50%), Gaps = 41/721 (5%)

Query: 10  EALS--IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           E L+   + AR     L +E+  +   YY    P++ D +YD L     +I  A P L  
Sbjct: 19  EDLTEVPDDARTRHRDLSEELDRYAFAYYVQDAPLVSDGQYDELMGELKSIEAAHPALV- 77

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  K+ G    +   V H     SL+  ++ ++L  +  R+ R           
Sbjct: 78  --TPDSPSQKVNGGFAATFAPVKHLERMQSLDNAFSSDELSAWAARVEREVGSAAV---- 131

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           +  E K+DG  + + YE+G+ + AA RGDG +GEDV+A +R +  +P+ L   ++P ++E
Sbjct: 132 YLCELKVDGVAVDLVYERGRLLRAATRGDGVTGEDVTANVRTMDDVPQQLSGDDVPPLLE 191

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGE+Y     F  +N   +A G+ P+ANPRNAA+G LR+ +     +R L   VHGLG 
Sbjct: 192 VRGEIYFPVEAFAEVNAGQVADGKPPFANPRNAAAGSLRQKDARVTASRPLRLVVHGLGA 251

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 + Q E   ++R LG PV++ V   +   G+ +Y    +  R ++ ++IDG+V K
Sbjct: 252 REGFSPERQSEAYARLRELGLPVSDRVEVLDDLEGVWAYIERYREQRHSVEHEIDGVVVK 311

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ++LG  +R+PRW I+ K+  ++A+T+LLDI + +GRTG +TP A +EPV + G
Sbjct: 312 VDQVALQRRLGSTSRAPRWAIAFKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVKVAG 371

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN   +K            + + +GD V++++AG+VIP+V+  +V  R  D 
Sbjct: 372 STVQLATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVAARTGDE 420

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P+ CP C + +  +      +  A  RC    +C AQ  ER+ H   R AF+IE 
Sbjct: 421 REFEMPTHCPECGTELRHEK-----EGDADIRCPNARSCPAQLRERVFHVAGRGAFDIEN 475

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +      +       I    D+F+L   +   T       G    +   L  ++  R
Sbjct: 476 LGYEAGIALLQEH----LIEDEGDVFSLDEEKLERTAFFTKKDGALSANGRKLLTNLQTR 531

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +++ L R + +L IRHVG   A++LA+ + S    A+     +A              VG
Sbjct: 532 KDVPLWRVLVALSIRHVGPTAAQALARDFRSLDRIAEASEEELAAA----------DGVG 581

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             IA+++ E++    +   VE             E      +    +V TG+L+   R +
Sbjct: 582 PTIARSVKEWFAVDWHRGVVEKWRAAGVRMADEGEDAGPGPLTGVAVVVTGSLRDHSRDQ 641

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           A   + + G  V+  +S+KT  ++VG +PGSK +KA Q+   I++++ F  LL++     
Sbjct: 642 AIAAIQERGGKVTGSVSKKTGFVVVGADPGSKYDKAVQVKAPILDDDGFRVLLEEGPEAA 701

Query: 726 R 726
           R
Sbjct: 702 R 702


>gi|229815888|ref|ZP_04446212.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM
           13280]
 gi|229808583|gb|EEP44361.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM
           13280]
          Length = 752

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/735 (32%), Positives = 358/735 (48%), Gaps = 76/735 (10%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L   + YH   YY    P I D+ +D L      I  A P+L     P+    ++GG +
Sbjct: 49  ELRHLLDYHAYRYYALDAPEITDAAFDKLLVELQQIEAAHPELV---TPDSYTQRVGGYV 105

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           +     VTH     S++   N+E+L +++ R            + +T E KIDG  + I 
Sbjct: 106 SEQFTPVTHMARMYSMDDAMNLEELDEWLARTEEALGA---GRVAYTCELKIDGLGVAIT 162

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--------NIPEIIEVRGEVYIS 194
           Y+ G FV AA RGDG +GEDVS  +R I  +P  LS         +    IEVRGEVY+ 
Sbjct: 163 YQNGAFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEAALAHMGADRGTPIEVRGEVYMP 222

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN E  A GR+P+ANPRNAA+G LR+ +P    TR L  F++ +  T+ +    
Sbjct: 223 KGSFARLNAEADAEGREPFANPRNAAAGSLRQKDPKVTATRSLATFIYSIADTAPLHVDS 282

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+  L  +R  GF VN  V +  +   + ++  +  + R  L YDIDG+V KVD F  Q 
Sbjct: 283 QHAFLDWLREAGFSVNASVARCTSPAEVHAFCADALAHRGDLDYDIDGVVVKVDGFDQQA 342

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  AR+PRW I+ KF  ++ +T L +I IQ+GRTG+LTPVA  +PV + G+ I  ATL
Sbjct: 343 DLGFTARAPRWAIAFKFPPEEKTTVLREIRIQVGRTGVLTPVAEFDPVTVAGSTIARATL 402

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+            +D+RVGD ++V +AG+VIP+VV  ++++R  DA  +  P  
Sbjct: 403 HNLDEIRR-----------KDVRVGDTIIVHKAGDVIPEVVGPMLDKRPADAVEWDMPEA 451

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S VV + +        A+RC   L C AQ  ERL H+VSR   +++GLG + +D 
Sbjct: 452 CPACGSPVVHEGDE------VAYRCV-SLDCPAQLKERLIHWVSRGCMDVDGLGDELIDK 504

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS--------------VTNLY 539
             +    A  +R  AD +TL      +                               + 
Sbjct: 505 MIE----AGLLRDVADFYTLDASAIAALDTGRTYAKDDKKKGVAAGDPIKVGHTIAGKVM 560

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           D + + +   L R +F+LGIRHVG  +A  LA+ +L+    A      IA          
Sbjct: 561 DELVRSKAQPLSRVLFALGIRHVGKSVAEVLAQRFLTIDALAAASEEDIAAC-------- 612

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALL-------KEVSPSIGRHEKN--------VS 644
               +G  IA ++ EF     N+  ++ L        + +  ++ +  +           
Sbjct: 613 --EGIGPKIAASVREFLSVSENLEVLQRLREAGLALEENLGAAVAQAAQETGVDADLAAG 670

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             ++    V TGTL    R +A   +  LGA VS  +S+KT  ++ G   GSKL KA+ L
Sbjct: 671 QPLDGLAFVLTGTLVNRTRDEAGAALKLLGAKVSGSVSKKTSYLVAGPKAGSKLTKAESL 730

Query: 705 GVKIMNEEQFLFLLQ 719
           GV +++EE    +L 
Sbjct: 731 GVPVLDEEALERILA 745


>gi|161485980|ref|NP_737948.2| NAD-dependent DNA ligase LigA [Corynebacterium efficiens YS-314]
 gi|259506289|ref|ZP_05749191.1| DNA ligase [Corynebacterium efficiens YS-314]
 gi|259166069|gb|EEW50623.1| DNA ligase [Corynebacterium efficiens YS-314]
          Length = 678

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/712 (31%), Positives = 355/712 (49%), Gaps = 50/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            Q R+  + L +++ YH D YY   +P I D+++DAL R+   +    P+LA    P+ P
Sbjct: 6   AQLRRTWNELAEKVRYHRDLYYNQ-QPEIPDADFDALFRQLQDLEEQHPELAV---PDSP 61

Query: 75  LNKIGGEMNL--SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             ++G  +    S   V H    LSL+ +++ E+LR ++ R           +  +  E 
Sbjct: 62  TKEVGAPVTEQSSFDNVEHLERMLSLDNVFDEEELRDWLART---------PAKRYLTEL 112

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVR 188
           KIDG  I + Y  G    AA RGDG  GED++A  R I  IP  L+      IP ++EVR
Sbjct: 113 KIDGLSIDLVYRNGMLERAATRGDGRVGEDITANARVIGDIPHELTATEEYPIPAVLEVR 172

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEV+I   DF  +N + I  G KP+ANPRNAA+G LR+ NP D+  R L    HG+G + 
Sbjct: 173 GEVFIPIEDFADVNAQRIEDGGKPFANPRNAAAGSLRQKNPEDVKKRRLRMITHGIGYSE 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q++    +   G P ++      T   +V         R    +++DGLV KVD
Sbjct: 233 GFQPASQHDAYLALAAWGLPTSSYTEAVETADAVVDKVLYWADHRHDALHEMDGLVIKVD 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+ LG  +R+PRW I++K+  ++ +T+L+DI + +GRTG +TP A +EPV + G+ 
Sbjct: 293 DIASQRALGSTSRAPRWAIAYKYPPEEVTTKLIDIKVSVGRTGRVTPFAMMEPVFVAGST 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN+  +K            + + +GD V+V++AGEVIP+V+  +V  R    + 
Sbjct: 353 VSMATLHNQSEVKR-----------KGVLIGDTVVVRKAGEVIPEVLGPVVELRDGTERE 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S +       T    A  RC    +C  Q  +RL +   R AF+IE LG
Sbjct: 402 FVFPEHCPECGSTL-----APTRAEDADWRCPNTRSCPGQLSQRLTYIAGRGAFDIEALG 456

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++      ++      +   A +F L       +       G  + S   L  ++ +R+N
Sbjct: 457 EKGAQDLIRN----GILVDEAGLFDLTEEDLLESDVYTTKAGAVNASGRKLLANLEQRKN 512

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R + +L IRHVG   AR+LA  Y S Q       + +A              VG I
Sbjct: 513 TDLWRVLVALSIRHVGPTAARALAGRYRSMQKLVDAPVDELAET----------DGVGMI 562

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IAQ+  ++++   +   V+              + +   +E   +V TG L+   R   +
Sbjct: 563 IAQSFKDWFEVDWHRAIVDTWAAAGVTMEDAETEQLEQTLEGLTIVVTGGLEGFTRDSVK 622

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E +   G   S  +S+KTD ++VG+N GSK  KA++LG+ I++EE F+ LL 
Sbjct: 623 EAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLTILDEEAFVRLLD 674


>gi|38233671|ref|NP_939438.1| NAD-dependent DNA ligase LigA [Corynebacterium diphtheriae NCTC
           13129]
 gi|81401524|sp|Q6NHQ4|DNLJ_CORDI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|38199932|emb|CAE49600.1| DNA ligase [Corynebacterium diphtheriae]
          Length = 677

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/713 (30%), Positives = 352/713 (49%), Gaps = 49/713 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
              R++   L +++ +H D YY +  P I D+E+D L R+   +    P+LA    P  P
Sbjct: 6   ADLRRQWDDLAEQVRHHRDAYYNH-TPEISDAEFDQLFRQLQQLEQEHPELAV---PESP 61

Query: 75  LNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G  +   S   V H    LSL+ +++  +L  ++ R           S  +  E K
Sbjct: 62  TLRVGAPVEQSSFDNVEHLERMLSLDNVFDAAELDDWLQRT---------PSATYLTELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRG 189
           IDG  I + Y  G+   AA RGDG  GEDV+A  + I  IP  L       +PE++E+RG
Sbjct: 113 IDGLSIDLVYRSGRLERAATRGDGRVGEDVTANAKVIEDIPHRLQHSDAYPVPELVEIRG 172

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           EV+I+  DF  +N++    G KP+ANPRNAA+G LR+ +   +  R L    HG+G +  
Sbjct: 173 EVFIAVEDFALVNEQRQKEGGKPFANPRNAAAGSLRQKDTEAVRKRRLKMICHGIGASEG 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A  Q++  + +   G PV+   ++ ++   +          R    +++DGLV K+D 
Sbjct: 233 FEADTQFDAYKALEAWGLPVSPYTKRVHSAQEVQERVTYWAQHRHDATHEMDGLVIKIDS 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+ Q+ LG  AR+PRW I++K+  ++ +T+LLDI + +GRTG +TP A ++PV + G+ +
Sbjct: 293 FAEQRALGSTARAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMDPVFVAGSTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN+  +K            + + +GD V++++AGEVIP+V+  +V +R    + F
Sbjct: 353 EMATLHNQTEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGSEREF 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP C +R+         +  A  RC    +C AQ   RL +   R AF+IE LG+
Sbjct: 402 IFPTLCPACGTRL-----APQKEDDADWRCPNSQSCPAQLSSRLTYLAGRGAFDIEALGE 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +  +    S      +   A +F L       T       G  + +   L  ++   ++ 
Sbjct: 457 KGAEDLIAS----GVLIDEAQLFNLTEDDLKRTKVYTTKAGALNATGEKLLANLESAKHT 512

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R + +L IRHVG   AR+LA  Y S +          A    D   +     VG II
Sbjct: 513 DLWRVLVALSIRHVGPTAARALAVRYRSLE----------ALRAADVEDIANTEGVGAII 562

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           AQ+  +++  P +   VE                    +E   +V TG+L    R  A+E
Sbjct: 563 AQSFAQWFDVPWHRNIVEVWADAGVTMADSEADIPDQVLEGLTIVVTGSLVDFSRDSAKE 622

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            +   G   S  +S+KT  ++VG+N GSK  KA+ LG++I+NE++F  LL   
Sbjct: 623 AIVSRGGKASGSVSKKTSYVVVGENAGSKETKARDLGLRILNEDEFKQLLANG 675


>gi|220912112|ref|YP_002487421.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
 gi|254778146|sp|B8HFJ3|DNLJ1_ARTCA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|219858990|gb|ACL39332.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
          Length = 770

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/754 (29%), Positives = 365/754 (48%), Gaps = 66/754 (8%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R+ IP +A      R+E  +L   I  +   YYQ   P++ D+E+D L RR + I    P
Sbjct: 21  RESIPSDA-----IREEYENLSDLIRKYRFAYYQDDAPLVSDAEFDTLFRRLEEIEALHP 75

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +L  +   + P  ++GGE + +   V H     SLE +++IE+L  ++ R      K  D
Sbjct: 76  ELVAN---DSPTQEVGGEASAAFAAVEHLQRMYSLEDVFSIEELEAWLNRAEASIAKLGD 132

Query: 124 N--SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
                 +  E KIDG  + + Y  GK V AA RGDG +GED++  +  I  IP+ L    
Sbjct: 133 GTAQAAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIKEIPQQLSGEG 192

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            P  +EVRGEV+I    F   N+ +I  G+ P ANPRNAA+G LR+ +P +   R L  F
Sbjct: 193 YPSEVEVRGEVFIPSKAFAEFNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPLKMF 252

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           VHG+G    + A+ Q E    ++  G PV+           ++ + ++    R  L ++I
Sbjct: 253 VHGIGAREGLEARSQSETYALLKEWGLPVSPYFEVLEARADVLGFISKYGEQRHKLLHEI 312

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KVD+F+ Q+ LG   R PRW +++K+  ++  T+LLDI + +GRTG +TP   +E
Sbjct: 313 DGIVIKVDDFATQRALGYTTRVPRWAVAYKYPPEEVHTKLLDIQVNVGRTGRVTPFGMME 372

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+ +  ATLHN+D +K            + +++GD V++++AG+VIP++V  ++ 
Sbjct: 373 PVKVAGSTVEMATLHNQDVVKA-----------KGVKIGDIVVLRKAGDVIPEIVGPVLA 421

Query: 420 ERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
            R     P   F  P+ CP C + +         +     RC  G +C +Q  ER+ H  
Sbjct: 422 LRDQQDPPVRDFVMPTECPACGTPL-----APAKEGDVDIRCPNGKSCPSQLRERVFHLA 476

Query: 477 SRDAFNIEGLGKQQLDFFFKS-EDPAFSIRIPADIFTLQRRQQTS-------------TT 522
            R  F+IE LG +      +  E     +   A +F L R                  T 
Sbjct: 477 GRGGFDIEALGWEAAIALTQPAEPDVPPLTSEAALFDLTREDLADVKIRREKRSKGVATG 536

Query: 523 KIENILGFGDV-----------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           + E +  F              S   L+  ++K ++  L R + +L IRHVG   +R+LA
Sbjct: 537 EYELVPYFYSKGTAKSPSKPTASTEKLFKELDKAKSQPLWRVLVALSIRHVGPRASRALA 596

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + + +           +AH          V  VG  IA A+ E++    +   V+     
Sbjct: 597 QAFGTMDGIRAASEEELAH----------VDGVGPTIAAALKEWFAEDWHREIVDRWAAA 646

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   +++    +E   +V TG+L    R +A+E +   G   S  +S+ T  ++ G
Sbjct: 647 GVRMEDERDESTPRTLEGLTVVVTGSLPNFSRDEAKEAILVRGGKASGSVSKNTSYVVAG 706

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           ++ G+KL+KA+QLG+++++E+ F  LL      +
Sbjct: 707 ESAGTKLDKAEQLGIRVLDEDGFRLLLDGGPAAV 740


>gi|300173629|ref|YP_003772795.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811]
 gi|299888008|emb|CBL91976.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811]
          Length = 681

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/716 (34%), Positives = 380/716 (53%), Gaps = 51/716 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +L PIE LS E A+ E++ L+ ++  +   YY+   PI+ D  YDAL  R  A+   FP 
Sbjct: 4   ELKPIEKLSREAAQHEIAKLQDDLRQYGIAYYEQDAPIVEDYIYDALYARLVALETVFPQ 63

Query: 65  LARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                 P+ P   +GG M    L KV H  P LSL  ++++E+L ++ +R  +    + D
Sbjct: 64  FIN---PDSPTQNVGGAMTKSGLEKVVHPAPMLSLGDVFSLEELDEWDSRTTKSLGFQSD 120

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  + + Y  GK V A+ RG+G  GEDV+A ++ I  IP+VL  N P 
Sbjct: 121 ----YNLELKIDGLAVALTYVSGKLVQASTRGNGTIGEDVTANVKMIKAIPQVL--NEPI 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
            IEVRGE+Y+ K+ F  LN +    G  P+ANPRNAA+G LR+LN   +  R L+ FV+ 
Sbjct: 175 TIEVRGEIYMPKSSFSTLNKQRELDGLAPFANPRNAAAGSLRQLNAKIMKQRNLSAFVYY 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
             +   + +  Q + L++   LG P +   R       I +Y  E    R  L Y IDG+
Sbjct: 235 TAEPDILGSTTQSDALKRFSSLGLPTDTHNRVMTKMADINNYIAEYTVTRDNLAYGIDGV 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV++   Q  LG   + PRW I++KF  ++A T +  I+  +GRTG +TP A ++PV 
Sbjct: 295 VVKVNQLDDQLDLGNTVKIPRWAIAYKFPPEEALTVVRAIEWTVGRTGAVTPTAVMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+LHN DY+             + +R+ D V + +AG++IP++  +I+++R 
Sbjct: 355 LAGTTVQRASLHNPDYLN-----------EKGVRLEDTVTLHKAGDIIPEIGQVILSKRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             ++ +  P FCP CQS +V            A RC     CSAQ  E L HF SR+A N
Sbjct: 404 TGSEAYEIPVFCPACQSELVHIEGE------VALRCINPF-CSAQIQEGLTHFASRNAMN 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG+G + ++   K    A  I+  A I+ L   Q  S  K      F + +V NL  SI
Sbjct: 457 IEGMGPKVIEQLLK----ADYIKDVAAIYRLTSEQLFSLDK------FKEKAVNNLLMSI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + ++ SLE+ +F LGIR VGA+ AR LA  + + Q+ A      IA           + 
Sbjct: 507 ARSKDNSLEKLLFGLGIRMVGAKAARVLAGKFKNLQSIATATTEDIA----------NID 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQK 660
            +GD IA++IV+++  P +   ++ L         +   E + ++   +K++V TG L+K
Sbjct: 557 GIGDRIARSIVQYFDMPESKQLLQELTDAGVNQKYLSDVEIDENNFFYHKRIVLTGKLEK 616

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             R    +++   GA VS  +S KTD++I G+  GSKL KA +LGV    E++F+ 
Sbjct: 617 NSRSMVTKWLQDHGASVSGAVSAKTDLLIAGEAAGSKLRKANELGVPTWTEQEFIS 672


>gi|116628243|ref|YP_820862.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMD-9]
 gi|116101520|gb|ABJ66666.1| NAD-dependent DNA ligase [Streptococcus thermophilus LMD-9]
          Length = 648

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/699 (31%), Positives = 364/699 (52%), Gaps = 53/699 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L  +++ +   YY    P + D+EYD L R    +    P+L ++   + P +++GG
Sbjct: 1   MKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +     K  H  P  SL+  ++ E+L  F  RI     K +  +  +  E KIDG  I+
Sbjct: 58  LVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRI-----KSEFPNADYMAELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +F  
Sbjct: 113 LTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEFER 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N +    G   +ANPRNAA+G LR+L+   +  R L  F +     +E     Q ++L 
Sbjct: 171 INTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERL--TQNDVLN 228

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG   
Sbjct: 229 EVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEELGFTV 288

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++PRW I++KF  ++   +LL +D Q+GRTG++TP A L PV + G  ++ ATLHN DYI
Sbjct: 289 KAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI 348

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
                        +DIR+GD V+V +AG++IP V+ ++ ++R         PS CP C S
Sbjct: 349 T-----------EKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-AMPVPSQCPSCGS 396

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  FK+E 
Sbjct: 397 GLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFKAE- 448

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               ++  ADI+ L      ++     + GF + S   LY +I   +  S E+ ++ LGI
Sbjct: 449 ---LVKEVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLYGLGI 499

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVGA++++ L + + + +  A          + D  ++  V  +G++IA++I  ++   
Sbjct: 500 RHVGAKVSKQLLESFGTIKELA----------SADVQAIAAVDGLGEVIAKSIQRYFAKE 549

Query: 620 RNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                ++      V+ S    +    + +  K +V TG L+ ++R +A+  +  LGA V+
Sbjct: 550 EAQVLLKELESYGVNLSYLGQKVTDDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAKVT 609

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             +S+KTD+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 610 GSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 648


>gi|325137931|gb|EGC60506.1| DNA ligase, NAD-dependent [Neisseria meningitidis ES14902]
          Length = 841

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/842 (30%), Positives = 392/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               F A+   + L   + LGF + N           ++++Y +M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 -----TLQRRQQTSTTKIENILGFGD----------------VSVTNLYDSINKRRNISL 550
                TLQ+ ++T+   +                            N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + +   +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|205372454|ref|ZP_03225267.1| NAD-dependent DNA ligase LigA [Bacillus coahuilensis m4-4]
          Length = 635

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/682 (35%), Positives = 359/682 (52%), Gaps = 53/682 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A + +  L Q ++  +  YY   KP + D EYD+  +   AI   FP+L   + P
Sbjct: 1   MERQFAEERVKELHQTLNEWNYAYYVLDKPQVSDQEYDSKLQELIAIEQEFPEL---KTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IG ++     KV H IP LSL   +N EDL+ F  +I         ++  +  E
Sbjct: 58  DSPSERIGAQVLEGFTKVQHDIPMLSLGNAFNEEDLKDFDRKIRERVG----DNFAYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I+++YE G FV  A RGDG  GED++A +R I +IP  L   +   IEVRGE 
Sbjct: 114 LKIDGLAISLKYEDGLFVQGATRGDGTIGEDITANLRTIRSIPLRLKDAV--TIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  F++LN+     G +P+ANPRNAA+G LR+L+P     R L+ F++ +    E+ 
Sbjct: 172 FMPKRSFVSLNEAKDEAGEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYSIANGEEVG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                + L  +  LGF  N   RQ  T   ++ Y  E    R  L Y+IDG+V KV+ FS
Sbjct: 232 MTEHAKALAYLDSLGFKTNPLRRQCETIEEVMMYVEEWTEKRQDLAYEIDGIVIKVNSFS 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I++KF  ++  T L DI++ +GRTG +TP A LEPV + G  +  
Sbjct: 292 QQDELGFTAKSPRWAIAYKFPAEEVITVLKDIELSVGRTGAVTPTAILEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV  +   R  + + F  
Sbjct: 352 ASLHNEDLIR-----------EKDIRIGDHVIVKKAGDIIPEVVSSLKERRTGEEKEFFM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP C S ++R  +        A RC     C A   E L HFVSR A NI+GLG++ 
Sbjct: 401 PSHCPECDSELIRIEDE------VALRCMNP-KCPALIRESLIHFVSRTAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   FK E     I+  ADI+ L + Q  +  +       G+ S  NL  +I+  R  SL
Sbjct: 454 ISQLFKEE----LIQDVADIYFLTQEQLIALER------IGEKSALNLIQAIDASRENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVGA+ A++LA+ + +  N            N     LIR+  +GD +A 
Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQEFDTLTNLQ----------NASKEELIRIDEIGDKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-----SSEIENKKLVFTGTLQKIQRHK 665
           +IV+++  P     +  L K       +  K +      +    K +V TG L  + R++
Sbjct: 554 SIVQYFSMPEVHELIAELQKAEVNMQYKGPKKIAVEAGETSFAGKVVVLTGKLSILTRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDI 687
           A+E +  LG  V+  +S+K   
Sbjct: 614 AKEKIELLGGKVTGSVSKKPTF 635


>gi|238855396|ref|ZP_04645707.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3]
 gi|260665363|ref|ZP_05866211.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US]
 gi|282932093|ref|ZP_06337550.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
 gi|238831994|gb|EEQ24320.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3]
 gi|260560867|gb|EEX26843.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US]
 gi|281303772|gb|EFA95917.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
          Length = 669

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/717 (30%), Positives = 371/717 (51%), Gaps = 54/717 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+ + A++E+ +L ++++   + YY    P + D+ YD   +R   +   FP+L  S
Sbjct: 1   MAKLNKKAAQEEIENLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQRLVELEKQFPELVTS 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H IP LS+  +++ ++LR+F  RI +         + +
Sbjct: 61  ---DSITQRVGGEIKSDLGKVEHQIPMLSMGDVFSKDELREFDQRIQKLVG----GPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK V A+ RG+G  GEDV+  ++ I  IP+ L   +   +EVR
Sbjct: 114 NVELKIDGLSLSLEYSDGKLVRASTRGNGRIGEDVTKNVQYISDIPKTLPEAL--TMEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  FL LN E    G   +ANPRNAA+G LR+L+P     R L+ F++      
Sbjct: 172 GECYMGKEAFLKLNTERDENGEAVFANPRNAAAGSLRQLDPQVTKKRNLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +     Q++ +Q+M  LGF  N   ++     G+ +Y +E  S R +L Y IDG+V KVD
Sbjct: 232 K-EITSQHQAIQQMAKLGFHTNETGKRLANLDGVFAYIDEYTSKRDSLSYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQKQLG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PV + G  
Sbjct: 291 DLTLQKQLGNTVKVPRWEIAYKFPPEEQETIVHEIVWTVGRTGVVTPTAVMDPVELAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A LHN D +K            +D+R+GD V + +AG++IP++ ++++++R  D++ 
Sbjct: 351 VSRAVLHNPDLLK-----------QKDVRIGDTVRLHKAGDIIPEISEVVLSKRPVDSKV 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C   +V            A RC    AC AQ  E + HF SR A +I GLG
Sbjct: 400 YEIPDKCPSCGQALVHLEGE------VALRCINP-ACPAQIEEGIIHFASRPAMDIMGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +    +       ++  AD++ L             +  FGD S+ NL  +I+  R 
Sbjct: 453 PKIVRQLIQHN----LVKDIADLYHLTADDLA------ELDHFGDKSINNLLTAIDNSRQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +  LGI HVGA+ A  + + + +     Q   + +            +  +G+ 
Sbjct: 503 NSVELLLNGLGIDHVGAKAALLIVQRFKNLNKIMQASVSELTA----------IDTIGET 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           IA++I  ++        V+ L+              +E+   +  +NK +V TG L    
Sbjct: 553 IAESITTYFAQASVQKLVQELIDSGVNIDYLGEDVSNEEIADNFFKNKTVVLTGKLAHFT 612

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +  + +  LGA V+  +S+KTD +I G + GSKL KA+ L + ++ EE+ +  +Q
Sbjct: 613 RSEFTKKLESLGAKVTGSVSKKTDYVIYGTDAGSKLTKAESLQIALLTEEEAIEKIQ 669


>gi|7674019|sp|Q9ZHI0|DNLJ_THEFI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]; AltName: Full=Tfi DNA ligase
          Length = 670

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/717 (33%), Positives = 384/717 (53%), Gaps = 52/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+AR+ ++ L   I YH+  YY  + P I D+EYD L R    +   FP+    + P
Sbjct: 1   MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEF---KSP 57

Query: 72  NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G      +   V H     SL+  +  E++  F  R+ R   +K      +T+
Sbjct: 58  DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALGRK--RPFLYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG  GE+V+  +  IPTIPR L   +P+ +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLK-GVPDRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SE 248
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P     R L    + LG    E
Sbjct: 175 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLEE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K QYE+L  ++  GFPV +G  +A    G+   Y    + R  LP++ DG+V K+D+
Sbjct: 235 SGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPFEADGVVVKLDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +L ++LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV I G+ +
Sbjct: 295 LALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  + +P 
Sbjct: 355 SRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +IEGLG+
Sbjct: 404 RWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIEGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       +R  AD++ L++       ++      G+ S  NL   I + ++ 
Sbjct: 455 KLIERLLEK----GLVRDVADLYHLRKEDLLGLERM------GEKSAQNLLRQIEESKHR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +++LG+  VG  +AR+LA+ + +     +     +    +             + 
Sbjct: 505 GLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELLEVEEVGE----------LT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+AI+E  ++P     V  L +       + E  VS  +     V TG L +  R + + 
Sbjct: 555 ARAILETLKDPAFRDLVRRLKEAGVSMESKEE--VSDLLSGLTFVLTGELSRP-REEVKA 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV ++ EE+F   L++    +
Sbjct: 612 LLQRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGAPV 668


>gi|114565926|ref|YP_753080.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318951|sp|Q0AZZ5|DNLJ_SYNWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114336861|gb|ABI67709.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 661

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/704 (33%), Positives = 376/704 (53%), Gaps = 48/704 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +    +  L +E+  HD  YY    P+I DS YD L +    +   +P    +   + P 
Sbjct: 2   EVSSRIKELREEMQKHDYHYYILDAPLISDSGYDRLMQELKKLEEEYPQYITA---DSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++ G+ +     V H  P LSL+  ++ +DL +F  RI R  +     ++ +  E KID
Sbjct: 59  QRVAGKASEKFSPVRHRFPLLSLDNAFSYQDLLEFDRRIGRVAR-----TLSYMAELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + YE G  + AA RGDG  GEDV+A IR I TIP  L  ++P  +EVRGEV++ K
Sbjct: 114 GVSIALVYENGVLLNAATRGDGLVGEDVTANIRTIKTIPLRLRHSLP-RLEVRGEVFMPK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            +F+ LN+E    G + +ANPRNAA+G LR+L+P     R L+ FV+ +          Q
Sbjct: 173 QEFIRLNEEKEEKGERVFANPRNAAAGSLRQLDPRVTAGRALSAFVYDIIYMEGQTLAEQ 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E    M+ LG PVN  VR     + ++++  E    R  LPY+IDG+V K++  + +++
Sbjct: 233 QEAWHFMQELGLPVNPEVRFCADINAVLAFTEEYAEKRHELPYEIDGVVVKLNTLAEREE 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ARSPRW +++KF  ++  TRLL ++I +GRTGI+ P A LEPV + G  ++ A++H
Sbjct: 293 LGATARSPRWAMAYKFPAEEKETRLLGVEINVGRTGIIAPTALLEPVFLAGTTVSRASMH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D IK            +D+R+GD VL+ +AG++IP+++  +  +R  + +  + P  C
Sbjct: 353 NFDLIK-----------EKDLRIGDMVLLHKAGDIIPEIIASLPEKRSGEERVITPPENC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+V R           A+RC   + C A+  E L  F SR A +I+GLG   ++  
Sbjct: 402 PACDSKVARFAGE------VAYRCEN-INCPARLKESLIFFASRGAMDIDGLGSAVIEQL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     ++   D++ L+  + T+  ++      G  S  NL  +IN+ ++  L R +
Sbjct: 455 VNKDM----VKRIDDLYRLREEEITALERM------GPKSAANLIKAINESKSRPLSRLL 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGIRH+GA  A+ L+++     +F +              +L  +P +G  +A+++V 
Sbjct: 505 TALGIRHIGARSAKILSRHIHDIDDFYKL----------GVENLTSIPEIGPKMAESMVN 554

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+  PRN   +E L      +     +     ++ K  V TGTL  + R +A E +   G
Sbjct: 555 FFAEPRNRETIEDLKDLGVNTREEAIEAGEQLLQGKTFVLTGTLPSLTRQQASEMIESRG 614

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             VS+ +S+KT  ++ GD+PGSKL+KA QL + I++E  FL LL
Sbjct: 615 GKVSSSVSKKTSYVVAGDDPGSKLDKALQLELTILDEAGFLNLL 658


>gi|312278868|gb|ADQ63525.1| DNA ligase [Streptococcus thermophilus ND03]
          Length = 648

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/699 (31%), Positives = 364/699 (52%), Gaps = 53/699 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L  +++ +   YY    P + D+EYD L R    +    P+L ++   + P +++GG
Sbjct: 1   MKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +     K  H  P  SL+  ++ E+L  F  RI     K +  +  +  E KIDG  I+
Sbjct: 58  LVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRI-----KSEFPNADYMAELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +F  
Sbjct: 113 LTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEFER 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N +    G   +ANPRNAA+G LR+L+   +  R L  F +     +E     Q ++L 
Sbjct: 171 INTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERL--TQNDVLN 228

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG   
Sbjct: 229 EVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEELGFTV 288

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++PRW I++KF  ++   +LL +D Q+GRTG++TP A L PV + G  ++ ATLHN DYI
Sbjct: 289 KAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI 348

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
                        +DIR+GD V+V +AG++IP V+ ++ ++R         PS CP C S
Sbjct: 349 T-----------EKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-AMPVPSQCPSCGS 396

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  FK+E 
Sbjct: 397 GLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFKAE- 448

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               ++  ADI+ L      ++     + GF + S   LY +I   +  S E+ ++ LGI
Sbjct: 449 ---LVKEVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLYGLGI 499

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVGA++++ L + + + +  A          + D  ++  V  +G++IA++I  ++   
Sbjct: 500 RHVGAKVSKQLLESFGTIKELA----------SADVQAIAAVDGLGEVIAKSIQRYFAKE 549

Query: 620 RNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                ++      V+ S    +    + +  K +V TG L+ ++R +A+  +  LGA V+
Sbjct: 550 EAQVLLKELESYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAKVT 609

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             +S+KTD+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 610 GSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 648


>gi|302037359|ref|YP_003797681.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii]
 gi|300605423|emb|CBK41756.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii]
          Length = 675

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/715 (33%), Positives = 376/715 (52%), Gaps = 50/715 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + +  + A + ++ L ++I +HD  YY   +P I D+EYD L R    +  A PDL    
Sbjct: 4   QPMPHQTAEQRIADLRRQIRHHDHLYYTKDRPEISDAEYDRLFRELVDLETAHPDLVTG- 62

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++G      L KV+H  P LSL+ I + +D+R F  R+ R     + + I +T
Sbjct: 63  --DSPTQRVGAPPLDELTKVSHEKPMLSLDSITDQDDVRAFDARMKREL---ETDQIVYT 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEV 187
            EPK DG  + + Y++G FV  A RGDG  GEDV+  +R I  +P  L    ++P  + V
Sbjct: 118 AEPKFDGLSVELVYDRGAFVRGATRGDGMVGEDVTINLRTIRALPLQLDPQPSLPAHLVV 177

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+  ++F  LN  M   G + +ANPRNAA+G LR+L+     +R L    + +   
Sbjct: 178 RGEVYMRLDEFQVLNRRMTERGEEAFANPRNAAAGSLRQLDSRITASRPLTLTCYDIMAI 237

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S       ++ L  +   G PV    ++  +   ++S+     ++R +LP++IDG+V K+
Sbjct: 238 SGTAPPTHWDELDALAAWGLPVPEHRQRCRSIDEVLSFQQATDAMRDSLPFEIDGVVVKL 297

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D  + Q QLG ++RSPRW I++KFA ++  T + DI + +GRTG LTP+A L+PV +GG 
Sbjct: 298 DRRTWQDQLGSKSRSPRWAIAYKFAPRKEITVIQDIAVSVGRTGTLTPLALLKPVEVGGV 357

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+ ATLHN D +             +D+RVGD V V+RAG+VIP + + +        +
Sbjct: 358 TISRATLHNADEVAR-----------KDVRVGDTVKVERAGDVIPAIAERVPVPGETRQE 406

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF  P  CP+C S V R+         A   CTG   C AQ    ++HF S+ A +I+G+
Sbjct: 407 PFVMPDHCPVCGSAVARE--------GAYFYCTGQTVCVAQLKGAIEHFASKSALDIDGM 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           GK+ +            +R  AD+++L + Q  +        GF D S   L +SI + +
Sbjct: 459 GKKTIAQLVD----VGLVRDLADLYSLTKDQILTLE------GFADRSANLLLESIERSK 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           ++SL+R +  LGIR VG  IAR LAK + +           +          ++V  +G 
Sbjct: 509 SVSLDRLLMGLGIRQVGQHIARVLAKQFGTLSKLMSATQEDL----------LQVREIGP 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            I+ ++  F+   RN   +  L++               S  +  K  VFTG L+   R 
Sbjct: 559 EISASLTSFFSEERNRAVIARLIERGLTIAPPTTENTTGSQHLAGKTFVFTGGLEGYSRD 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+E V Q G  VS+ +S+K   ++ G +PGSKL++AQ+LGV+I+ E +F  L++
Sbjct: 619 QAKELVEQQGGQVSSSVSKKASFVVAGTDPGSKLDQAQKLGVRILTEAEFTALVR 673


>gi|241760920|ref|ZP_04759009.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374539|gb|EER64000.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 731

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/733 (40%), Positives = 441/733 (60%), Gaps = 51/733 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + LS EQA  EL  L   IS++D  Y+    P + DSEYDAL  R   I   FPDL R  
Sbjct: 24  KDLSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIR-- 81

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  K+G   N  L K+ H    LSL+  +  +D+  F+ R+ RF+  K++ ++  T
Sbjct: 82  -PDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAVICT 140

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
           +EPKIDG   ++RYEKG    A  RGDG  GEDV+  +R I  IP+ L   N PEIIE+R
Sbjct: 141 VEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEIIEIR 200

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GEVY++K+DF ALN       +K +ANPRNAA+G LR+L+P    R  L F  HG G+ +
Sbjct: 201 GEVYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDPNITARRSLRFLAHGWGEAT 260

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            + A  QY M++ +   G  V+N + +A+    ++ +Y ++++ R+ L +DIDG+VYK+D
Sbjct: 261 SLPADTQYGMMKMIESYGLSVSNLLARADNIGQMLDFYQKIEAERADLDFDIDGVVYKLD 320

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q++ G  AR+PR+ ++HKF  ++A T LLDI+IQ+GRTG+LTPVA+LEPV +GG +
Sbjct: 321 QLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVGGVV 380

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +++ATLHN D I+ L A           R GDRVLV+RAG+VIP++V+ + +    D   
Sbjct: 381 VSSATLHNSDEIERLGA-----------RPGDRVLVQRAGDVIPQIVENLTS--DVDRPI 427

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP  CP+C S   R+          A RCTGGL C AQ++ERL HFVSR AF IEGLG
Sbjct: 428 WHFPHRCPVCDSVARREEGE------VAWRCTGGLICPAQRVERLCHFVSRTAFEIEGLG 481

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K  ++ FF  +     I  PADIF L +++Q    +     G+G++SV NL  +I+KRR 
Sbjct: 482 KSHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDKRRK 533

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN------IIAHNNDDWLSLIR- 600
           +  +RF+F+LGIRHVGA  AR LAK Y ++ NF   I+       I+  ++++     + 
Sbjct: 534 VPFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQK 593

Query: 601 -----------VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
                      +P +G  I +++++F+    N   V  LL+EV       E   SS +  
Sbjct: 594 RVDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFE-LASSPLSG 652

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K +VFTG+LQKI R +A+     LGA V++ +S+KT++++ G+  GSKL KA++L + I+
Sbjct: 653 KIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISII 712

Query: 710 NEEQFLFLLQQYN 722
           +E+++  +++   
Sbjct: 713 DEDRWHRIVENDG 725


>gi|319789848|ref|YP_004151481.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1]
 gi|317114350|gb|ADU96840.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1]
          Length = 723

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/734 (31%), Positives = 382/734 (52%), Gaps = 57/734 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           ++ +     + LS E+AR+    L + I YHD  YY  + P+I D +YD L    +A+  
Sbjct: 21  LEGKTEEDFKKLSTEEARELAEKLRRVIRYHDYKYYVQANPVISDYQYDKLFHALEALEK 80

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A P++     P+ P  +I         KV H     SLE  ++ EDL+++  ++      
Sbjct: 81  AHPEVV---TPDSPTQRISPAFTGEFQKVKHYAEMTSLENTYSPEDLKEWDRKVKELLGT 137

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
              +++ + +EPK DG  + + Y+    V  A RGDG  GED++  IR I +IP     +
Sbjct: 138 ---DTVEYIVEPKFDGASVELVYKNDILVRGATRGDGIYGEDITVNIRTIKSIPLKAPFS 194

Query: 181 IP--EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237
               E+I +RGEV + K+ F  LN+E    G   +ANPRNAA+G LR  NP ++  R L+
Sbjct: 195 KHGIELISIRGEVIMPKSVFKKLNEEREKQGLTLFANPRNAAAGTLRLKNPAEVAKRGLD 254

Query: 238 FFVHGLGKTSE----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
            +V+ +  +         + Q E L+ +   GF      +       ++      +  R 
Sbjct: 255 CYVYQILYSEPKKLCTDIRTQKEALKLLAECGFKTPPIQKVCKNIEEVIETVLAAQEERE 314

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
           T  ++ DG+V KV++    ++LGE    PRW +++KF  KQA T+L+D+  Q+GRTG LT
Sbjct: 315 TWDFEADGMVIKVNDICAWEKLGETLHHPRWAVAYKFPAKQAVTKLIDVVWQVGRTGALT 374

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA LEPV +GG +++ ATL N D+IK            +DIR+GD V+V+RAGE IP +
Sbjct: 375 PVAILEPVEVGGVIVSRATLFNPDFIKS-----------KDIRIGDYVIVERAGETIPYI 423

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           V  + + R  D +P   P  CP+C + +V++L+       A  RC   + C AQ  E L 
Sbjct: 424 VGPVKDRRKGDEKPVEVPKHCPVCGAPIVKELDE------AVPRCPN-INCPAQLKEHLV 476

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
           ++      +I+GLG+   +   K       ++  AD++ L+R           + G+G  
Sbjct: 477 YWG--KVLDIKGLGESTANVLTKK----GLVKSIADLYYLKREDLL------KLSGWGLK 524

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
              NL + I K ++    + + +LGIRHVG + A+ LAK + + +             N 
Sbjct: 525 KSENLLNQIEKSKSAPFWKKLTALGIRHVGEKTAQLLAKRFKNIEELM----------NA 574

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIEN 649
           D+  L  +P +G I A +I  F++  +N+  +    EA  K         E+ +   +E 
Sbjct: 575 DFTELASIPGIGPITATSIQNFFKAEQNVEMIKKLQEAGFKFERTQEEEQEEKLPKPLEG 634

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +++VFTG L+   R +AQ  V  LGA  +  +++KT  ++VG+NPGSK +KAQ+LG+K++
Sbjct: 635 QRIVFTGELEHFTRKEAQHVVELLGANPTNSVTKKTSFVVVGENPGSKFQKAQKLGIKML 694

Query: 710 NEEQFLFLLQQYNT 723
           NE++F+ LL++Y  
Sbjct: 695 NEKEFIELLKRYAD 708


>gi|257125939|ref|YP_003164053.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b]
 gi|257049878|gb|ACV39062.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b]
          Length = 706

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/736 (32%), Positives = 389/736 (52%), Gaps = 52/736 (7%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           KK+ +   + ++  + +++   L  EI YH++ YY    PII D EYDAL R    +   
Sbjct: 11  KKQNINNEKNINFSKIQEKYKKLRNEIEYHNNLYYNEDNPIISDMEYDALMRELKQLEQE 70

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW--- 118
           +P+L      N P  KIGG  +    KV H  P LSL   +NI ++  F  R+ +     
Sbjct: 71  YPELL-ENSENSPTKKIGGTASEKFSKVRHRTPMLSLSNTYNISEIEDFDKRVKKIILSQ 129

Query: 119 ---QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
               K +D ++ + LE K+DG  I++ YE G+ V A  RGDG  GEDV+  IR I +IP+
Sbjct: 130 IDENKNNDENLEYILELKLDGLSISLIYENGELVQAVTRGDGQIGEDVTENIREISSIPK 189

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-R 234
            L    P  +EVRGE+ +  ++F  +N E    G   +ANPRNAASG +R+L+ T +  R
Sbjct: 190 KLKD--PVSLEVRGEIILPISNFNRINQEREDDGEDVFANPRNAASGTIRQLDKTIVADR 247

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L+ +++ L            E ++ ++ LGF       +   F  +    ++    R T
Sbjct: 248 GLDCYLYYLVNAENYGINTHLESIEYIKNLGFQTTGVFEKYTDFTELEKSIDKWHDKRKT 307

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L Y+ DGLV KV+ F+L + LG   +SPRW I++KF  +Q  T+L D+  Q+GRTG++TP
Sbjct: 308 LDYETDGLVIKVNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLTDVTFQVGRTGVITP 367

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA LE VN+ G+++  A+LHN D I+            +DI++GD V+V++A E+IP+VV
Sbjct: 368 VAELEAVNLSGSVVKRASLHNFDEIRR-----------KDIKIGDNVIVEKAAEIIPQVV 416

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
           +++ ++R         P+ CP+C S +  +      + + A +C   L C  +   ++ +
Sbjct: 417 NVVFDDRTGKEIEIQEPTNCPVCNSELSHE------EGLVALKCHNPL-CPEKVKRQIAY 469

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSRDA NI GLG + ++ F +       I+   DI++L++ +     ++EN+   G  S
Sbjct: 470 FVSRDAMNISGLGDKIVEKFIELGK----IKTIVDIYSLEKYR----EELENLEKMGQKS 521

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-QEINNIIAHNND 593
           V NL +SI   +     + +++LGI  VG   A  L K + + +N   Q I N++A    
Sbjct: 522 VDNLINSIESSKTRDFSKVLYALGIPFVGKFNANLLTKTFKNIENLKNQSIENLLA---- 577

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENK 650
                  V  +GD +A A+  F  +  N   +   + +  + +      EK   + I++K
Sbjct: 578 -------VKGIGDKVAVAVNTFLNDENNWKIITDLQNIGLQFAIDETNLEKIADNPIKDK 630

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             + TG LQK +R+  ++ +   G    +++S+  D +I G+  GSKLEKA++LG++++ 
Sbjct: 631 NFLATGKLQKYKRNDIKDIILSKGGNYLSVVSKNLDFLIAGEKAGSKLEKAEKLGIRVLT 690

Query: 711 EEQF-LFLLQQYNTTL 725
           EE F    L+  N  +
Sbjct: 691 EEDFEKEFLENINENI 706


>gi|326330727|ref|ZP_08197031.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1]
 gi|325951568|gb|EGD43604.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1]
          Length = 702

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/736 (30%), Positives = 363/736 (49%), Gaps = 57/736 (7%)

Query: 10  EALSIE---QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + L+ E   + + E   L ++I      YY    P + D+++D   RR + +   FP+L 
Sbjct: 3   DDLTAEAGPEQKSEHQELAEQIEDARYRYYVLDDPTLSDADFDQKWRRINELEEQFPEL- 61

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  K+GG  +     V H     SL+ +++ E+L  +  RI +          
Sbjct: 62  --RTPDSPTQKVGGTFSTEFTAVDHLQRMESLDNVFSFEELAGWHARIAK----DGAGQA 115

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIP 182
               E K+DG  I + YEKG+ V A  RGDG +GEDV+  +R I +IP  L+      +P
Sbjct: 116 ELLCELKVDGLAINLLYEKGRLVRALTRGDGRTGEDVTPNVRTIKSIPHRLTGTDEFPVP 175

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           +++EVRGEV++S   F  LN  ++  G+  +ANPRN+A+G LR+ +P    TR L    H
Sbjct: 176 DLVEVRGEVFLSIEVFDKLNASLVDAGKPMFANPRNSAAGSLRQKDPRVTATRELGMVCH 235

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDID 300
           G+G         Q      ++  G P +N V+   T   +  + +     R  +  ++ID
Sbjct: 236 GIGAREGFQPVAQSHAYDALKAWGLPTSNRVKVLKTLQEVEEFISYFGEHRHDVTEHEID 295

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVD+ SLQ++LG  +R+PRW I++K+  ++ + +LL ID+ +GRTG +TP   +EP
Sbjct: 296 GVVIKVDDISLQRRLGSTSRAPRWAIAYKYPPEEVNAKLLAIDVGVGRTGRVTPFGVMEP 355

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
             + G+ +  ATLHN   +K            +D+R GD +++++AG+VIP+++  ++  
Sbjct: 356 TKVAGSTVERATLHNAHEVKR-----------KDVRPGDTIILRKAGDVIPEILGPVLPL 404

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R      +  P+ CP C + +      +  +     RC     C AQ  ER+     R A
Sbjct: 405 RPEGLPEWVMPTECPACGTTL-----AEQKEGDKDLRCPNHRGCPAQVRERVFFASGRGA 459

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-------KIENILGFGDV 533
           F+IEG+G +       +   A  I    DIF L      +TT       K E   G GD 
Sbjct: 460 FDIEGMGYEA----ADALLAAEVITNEGDIFDLDEAGLATTTFFTRAAKKAEKEAGAGDR 515

Query: 534 ----SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
               +   L  ++ +R+++ L R + +L IRHVG   AR+LA  + S           +A
Sbjct: 516 VLNANALGLLRNLEERKHVPLWRVLVALSIRHVGPSAARALATEFGSLDAIWAASQEELA 575

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
                         VG IIA+AIVE+ Q   +   V+             +++V+  +E 
Sbjct: 576 AT----------EGVGGIIAEAIVEWRQVDWHQEIVDKWRAAGVSLADERDESVARTLEG 625

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
             +V TG+L+   R  A+E +   G   +  +S+KTD ++VGDN GSK  KA++LG+ I+
Sbjct: 626 LTVVVTGSLEDFSRDGAKEAIISRGGKAAGSVSKKTDYVVVGDNAGSKAAKAEELGLPIL 685

Query: 710 NEEQFLFLLQQYNTTL 725
           +E  F  LL+   T L
Sbjct: 686 DEAAFKVLLEDGPTGL 701


>gi|94263030|ref|ZP_01286849.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1]
 gi|93456573|gb|EAT06681.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1]
          Length = 678

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/697 (34%), Positives = 377/697 (54%), Gaps = 44/697 (6%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
           + I+YH+  YY    P + D EYD L R  + +   +P+L  +   + P  ++GG     
Sbjct: 22  ELIAYHNHRYYVLDDPELSDGEYDRLFRELEELESRWPELVTA---DSPSRRVGGAAAEQ 78

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
              V H++P LSLE  +   +L  F  R+ RF    DD  I +  EPK+DG  + + YE+
Sbjct: 79  FAPVRHAVPMLSLENAFAEAELYDFENRLRRFLNL-DDQPIAYYAEPKLDGLAVELVYEQ 137

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDE 204
           G F   + RGDG  GE++SA ++ I  IP  L     P  +++RGEV ++   F ALN++
Sbjct: 138 GFFTLGSTRGDGLVGENISANLKTIDDIPIRLRGEQAPARLDIRGEVCLTVAGFTALNEQ 197

Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
               G   +ANPRNAA+G LR+L+P     R L FF +G+     +    Q ++++ +  
Sbjct: 198 RAQNGESLFANPRNAAAGSLRQLDPAISAARPLEFFAYGVADADPLAVGSQQQVIELLAA 257

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           LGF              +++++ ++   RS LPY+IDG+V KV+E +LQK+LG + R+PR
Sbjct: 258 LGFKTIPHGHLCPDLAAVIAHFQQLAQRRSQLPYEIDGMVAKVNELALQKRLGSKTRTPR 317

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W I+ KF   QA+TRLL ++ Q+GRTG +TPVARLEPV +GG  ++ ATLHNE  I+   
Sbjct: 318 WAIAAKFPAVQATTRLLAVEYQVGRTGAVTPVARLEPVTVGGVTVSRATLHNEAEIRR-- 375

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                    +D+R+ D VLV+RAGEVIP+VV  +  +R+   +  + P+ CP C S+++R
Sbjct: 376 ---------KDLRLEDTVLVQRAGEVIPEVVKPLAEKRNGRQREITLPTHCPECGSQLIR 426

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
                        RC     C AQ+L  L HF  +   +IEGLG++ L+        A  
Sbjct: 427 PAAE------VVLRCPNHRHCPAQRLRALIHFCGKAGLDIEGLGQKVLEQL----TAAGL 476

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           +    DIF L+  Q         + G+G+    N+  ++N+RR + L R + +LGIRH+G
Sbjct: 477 VGDIPDIFRLRAAQLA------PLPGWGEKKAANVIAAVNRRRRVELGRLLAALGIRHIG 530

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A+ LA+ + + +        ++A   +D+L    +  +G   A A+V ++  P N  
Sbjct: 531 EVTAQLLARRFGTLEG-------LLAAGEEDFLD---IEGIGPQAAAALVTYFAAPGNRE 580

Query: 624 AVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            +  L +E+   I        S  + ++  +FTGTL    R +A+  V +LG  V+  L+
Sbjct: 581 ILRQLQEELGLEIQPEGGPEQSQPLGDRVFLFTGTLSNWSRSEAKARVKELGGEVATSLN 640

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R+   ++ G  PGSKL KA+++G+ I++EEQF  LL 
Sbjct: 641 RRVTHLVCGSKPGSKLPKAREMGLTILDEEQFRRLLA 677


>gi|303327018|ref|ZP_07357460.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3]
 gi|302863006|gb|EFL85938.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3]
          Length = 711

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/748 (34%), Positives = 390/748 (52%), Gaps = 65/748 (8%)

Query: 1   MKKRQLIPIEALSI------EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRR 54
           M  +   P+E  S+       Q R+    L  E+  H+  Y+    P I D +YDAL R 
Sbjct: 1   MSPQNKPPVEQHSLLAPQPSAQERERARRLSAELERHNYLYHTLDAPEISDEQYDALFRE 60

Query: 55  CDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114
              +   +P L     P+ P  ++GG +   L K  H      L+ +++ ED R F+ R+
Sbjct: 61  LTELEERWPGL---RSPHSPTLRVGGRLLDGLAKKAHRRRMYGLDNVFSDEDWRDFVERM 117

Query: 115 YRFWQKKDDNSIF--FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172
            R W  + +  +   F  +PK+DG  + I YE G  + A  RGDG  GE V+  +R I T
Sbjct: 118 QRAWDAELNGPLPLGFWCDPKLDGLALEIIYENGLLIEALTRGDGEIGEVVTEAVRTIRT 177

Query: 173 IPRVLSL--NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
           +P  L      P  +EVRGEV + K DF ALN +  A+GRK +ANPRNAA+G LR+L+ +
Sbjct: 178 VPLRLRGEGPFPARLEVRGEVVMFKKDFEALNAQQEALGRKTFANPRNAAAGTLRQLDIS 237

Query: 231 DI-TRYLNFFVHGLGKTSEIFAKG---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN 286
              +R L F  + LG+     AK    Q+E++ ++   GF      R       + +Y  
Sbjct: 238 VTESRPLRFLAYSLGEADWAPAKPCLFQHELMARLTAYGFLTPPDGRLCAGADEVEAYAA 297

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346
            ++  R   P +IDG V K D    Q+ LG  AR+PR+ ++ KF   QA TRL  IDIQ+
Sbjct: 298 WVREHRQDFPMEIDGAVAKEDNLEAQEALGFTARAPRFAVAFKFPAMQAETRLTGIDIQV 357

Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406
           GRTG+LTPVA LEPV +GG +++ ATLHNED I+            RD+RVGD V+V+RA
Sbjct: 358 GRTGVLTPVAVLEPVPVGGVMVSRATLHNEDEIRA-----------RDVRVGDTVIVQRA 406

Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466
           G+VIP+VV  +++ R PDA  F FP  CP C   V R+         AA RC   L+C A
Sbjct: 407 GDVIPEVVGPVLSRRPPDAVEFVFPHTCPACGEAVHREPGE------AAWRCDN-LSCPA 459

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526
            +L  + HFVS+   +I+G+G++ +     S      ++ PAD+FTL+  +     ++  
Sbjct: 460 VRLRAISHFVSKAGLDIQGVGQKWIAQLVTSGR----VQSPADLFTLKAEELLDFERM-- 513

Query: 527 ILGFGDVSVTNLYDSINKRRNI-SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
               G+V      D++++ R+  +L R I +LGIRHVG + AR LA ++    +  +   
Sbjct: 514 ----GEVLARKFVDALDEARHTATLPRLISALGIRHVGEQTARLLAGHFRDLDDLGRA-- 567

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--------G 637
                   D  +L  +P VG  +A +I  FY++P N   +E   +     +         
Sbjct: 568 --------DAETLQALPDVGPEVAASIRNFYESPANRAQLERFREMGLWPLSPLADANSA 619

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
              +     ++ K ++FTGTL  +QR KAQ      GA+ +  +++K D ++VGD PGSK
Sbjct: 620 ETAQTQVGPLQGKNILFTGTLS-LQRGKAQHLAEAAGAIPAGSVNKKLDFLVVGDKPGSK 678

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           L+KA+ LG+ +++E  F  LL      L
Sbjct: 679 LDKARTLGIAVLDEAGFRELLAASGIPL 706


>gi|227889453|ref|ZP_04007258.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200]
 gi|227849931|gb|EEJ60017.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200]
          Length = 668

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/716 (29%), Positives = 367/716 (51%), Gaps = 52/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  +A +++  L +++    D YY    P++ D+ YD   +    +   FPDL  +
Sbjct: 1   MAVLTHSEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       + + +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYTNGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD
Sbjct: 232 -RNITSQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +
Sbjct: 291 DLSLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTI 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LHN DY++            + +R+GD V + +AG++IP++  +++++R  D++P
Sbjct: 351 VSRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            I   AD++ L   Q         +  F + S+TNL  SI   + 
Sbjct: 453 PRIVKQLIDK----GFINDVADLYHLTPDQL------GQLDHFKEKSITNLLSSIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S E  ++ LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ 
Sbjct: 503 NSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGET 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRH 664
           IA+++  ++  P     ++ L              E+   +  + K +V TG L    R 
Sbjct: 553 IAESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSAFTRS 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 613 EFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|225377122|ref|ZP_03754343.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM
           16841]
 gi|225211027|gb|EEG93381.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM
           16841]
          Length = 668

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/705 (30%), Positives = 362/705 (51%), Gaps = 47/705 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + ++ L++ + YH D YY    P I D EYD + +    +    P+L     P+ P  
Sbjct: 6   AEERIAELKKTLEYHIDRYYNQDSPEISDYEYDMMMQELKNLEKEHPELV---TPDSPTQ 62

Query: 77  KIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           ++GG         V H++P LSL+ +++ E++  F+  + +     +     F +E KID
Sbjct: 63  RVGGTAKREAGVLVRHNVPMLSLQDVFSKEEVFNFVEEMQKQLDHPE-----FVVEYKID 117

Query: 136 GTMITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           G  +++RYE G+ + A  RGDG   GEDV+A  + I  + + L    PE +E+RGEVY+ 
Sbjct: 118 GLSMSLRYENGELILAETRGDGINFGEDVTANAKVIKDVKQKLKDK-PEYLEIRGEVYMK 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  +N+    +G+K +ANPRN A+G LR+L+      R L+ F+  + +   +    
Sbjct: 177 NAAFEKVNETQELLGKKVFANPRNCAAGTLRQLDSKVTKERDLSMFIFNIQQVRGMEFAT 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E  + ++  G  V +  +   T   +      +   R  L YDIDG V K++ FS ++
Sbjct: 237 HTEGYEFLKKQGIHVIDDYKVCTTAEEVWDAITAIGENRGNLAYDIDGAVVKINRFSDRE 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLGE ++ PRW I++K+  ++  +RLL+I++ +GRTG +TP A  EPV + G  ++ ATL
Sbjct: 297 QLGETSKVPRWAIAYKYPPEEKESRLLNIELSVGRTGRITPTAVFEPVRLCGTSVSRATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D+I  L           DI +GD ++V ++GE+IPK+ ++   +R  D + F  P  
Sbjct: 357 HNQDFIDDL-----------DIGIGDTIVVYKSGEIIPKIKEVKKEKRPSDWKRFVIPDV 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C ++  R+ +       A  RCT    C AQ    + +FV RDA +I+G G   ++ 
Sbjct: 406 CPVCGAKTEREKD------TADIRCT-SPNCPAQLERHIINFVGRDAMDIKGFGTVYIEE 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       I   AD+F L+  +     +   I+G  + +   L D+I K +     + 
Sbjct: 459 LVR----LGYINNVADVFVLKTHRDELIDQ--GIIG-KEKNTDKLLDAIEKSKENDAYKL 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +  LGI +VG   A+++ KY+    +  +               L  V  +G++ A  I 
Sbjct: 512 LTGLGIPNVGKAAAKAIMKYFKDMDHLKEA----------SVEQLTEVNDIGEVSALCIR 561

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F+ + +NI  ++ L +          + V S +  K +V TGTL  + R +A E + + 
Sbjct: 562 NFFTDEKNIEILDRLKEYGVNMQAEETETVESVLTGKTVVVTGTLPTLGRKEASELIEKY 621

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G   S  +S+KTD ++ G+N GSKL KAQ+LG+ +++EEQ   +L
Sbjct: 622 GGKASGSVSKKTDYVLAGENAGSKLTKAQELGIPVISEEQLKEML 666


>gi|329667842|gb|AEB93790.1| NAD-dependent DNA ligase [Lactobacillus johnsonii DPC 6026]
          Length = 668

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/716 (29%), Positives = 367/716 (51%), Gaps = 52/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  +A +++  L +++    D YY    P++ D+ YD   +    +   FPDL  +
Sbjct: 1   MAVLTHNEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N    ++GGE+   L KV H +P LS+  +++ E+L++F  RI +       + + +
Sbjct: 61  ---NSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKEELKEFDERITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYTNGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD
Sbjct: 232 -RNITSQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +
Sbjct: 291 DLSLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTI 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LHN DY++            + +R+GD V + +AG++IP++  +++++R  D++P
Sbjct: 351 VSRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            I   AD++ L   Q         +  F + S+TNL  SI   + 
Sbjct: 453 PRIVKQLIDK----GFINDVADLYHLTPDQL------GQLDHFKEKSITNLLSSIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S E  ++ LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ 
Sbjct: 503 NSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGET 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRH 664
           IA+++  ++  P     ++ L              E+   +  + K +V TG L    R 
Sbjct: 553 IAESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSAFTRS 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 613 EFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|322392021|ref|ZP_08065484.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780]
 gi|321145119|gb|EFX40517.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780]
          Length = 652

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/701 (30%), Positives = 361/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + ++ L + ++ +   YY    P + DSEYD L R    +  A P+      PN P +++
Sbjct: 3   ERMNELVELLNRYATEYYTSDNPSVSDSEYDRLYRELVELEQAHPEQVL---PNSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +        ++ +  E KIDG  
Sbjct: 60  GGKILDGFEKYSHQYPLYSLQDAFSREELLAFDARVRKELP-----NVTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE+G  V  A RGDG  GE+++  ++ +  IP  L   +   + VRGE Y+ +  F
Sbjct: 115 ISLTYEQGVLVVGATRGDGSIGENITENLKRVKDIPLTLPEAL--DMTVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DQVNQSRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRNSQEQV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A++   +  +  E+   R  LPYDIDG+V KV++   Q+QLG 
Sbjct: 231 LKHLEQLGFVVNPRRVLAHSMDEVWQFIQEVGQERDQLPYDIDGVVIKVNDLVGQEQLGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R    +    P+ CP C
Sbjct: 351 YI-----------SEKDIRKDDTVIVYKAGDIIPAVLRVVESKR-ISEEKLDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S+++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 ESKLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNISGLGPSMVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L             + G  + +   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLTEHDFL------QLEGVKEKTAQKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S +  AQ           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASKLLVQHFHSIETLAQA----------DPEEVSNIETLGSVIAKSLQTYFA 551

Query: 618 NPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +  VS           + +    +V TG L+++ R +A+  +  LGA 
Sbjct: 552 TEGSKILLRELKELGVSLDYKGQVVAGDAALSGLTVVLTGKLERLNRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKL+KAQ+LG++I +E     L
Sbjct: 612 VTGSVSKKTDLVVAGADAGSKLQKAQELGIEIRDEAWLEGL 652


>gi|15676564|ref|NP_273708.1| DNA ligase [Neisseria meningitidis MC58]
 gi|161869603|ref|YP_001598770.1| DNA ligase [Neisseria meningitidis 053442]
 gi|304388085|ref|ZP_07370214.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091]
 gi|81784869|sp|Q9K0E3|DNLJ_NEIMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359266|sp|A9M2U7|DNLJ_NEIM0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|7225892|gb|AAF41084.1| DNA ligase [Neisseria meningitidis MC58]
 gi|161595156|gb|ABX72816.1| DNA ligase [Neisseria meningitidis 053442]
 gi|304337942|gb|EFM04082.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091]
 gi|316983632|gb|EFV62613.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76]
 gi|325139885|gb|EGC62416.1| DNA ligase, NAD-dependent [Neisseria meningitidis CU385]
 gi|325200648|gb|ADY96103.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76]
          Length = 841

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/842 (30%), Positives = 393/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHICRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF+ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMLKADFVALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             + F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 -----TLQRRQQTSTTKIENILGFGD----------------VSVTNLYDSINKRRNISL 550
                TLQ+ ++T+   +                            N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + +   +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|254670337|emb|CBA05747.1| DNA ligase [Neisseria meningitidis alpha153]
          Length = 841

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/842 (30%), Positives = 392/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYERMQQKRPKLPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 -----TLQRRQQTSTTKIENIL----------------GFGDVSVTNLYDSINKRRNISL 550
                TLQ+ ++T+   +                            N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETTDKTVAESEQMPSEGSSVGASGKHKKPPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + +   +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGIAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIENKKLVFTG 656
                        +   P+N   +E L    +      E       ++  +  K  V TG
Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|118465270|ref|YP_883031.1| NAD-dependent DNA ligase LigA [Mycobacterium avium 104]
 gi|166215821|sp|A0QJE3|DNLJ_MYCA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118166557|gb|ABK67454.1| DNA ligase, NAD-dependent [Mycobacterium avium 104]
          Length = 693

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/728 (30%), Positives = 349/728 (47%), Gaps = 47/728 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   +   +      + R++   L + +  H   YY    PII D+E+DAL     A+  
Sbjct: 1   MSSAEADSVPP----EVRRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEE 56

Query: 61  AFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             P+L  +   + P   +GG        +  H    LSL+ +++ ++L  +  R+     
Sbjct: 57  RHPELRVA---DSPTQLVGGAGFATDFAEAAHLERMLSLDDVFDTDELIAWSNRVENEIG 113

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS- 178
           K       +  E KIDG  +++ Y  G+   AA RGDG  GEDV+   R I  +P  LS 
Sbjct: 114 KDPH----YLCELKIDGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSP 169

Query: 179 ---LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235
                +P ++EVRGEV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP    R 
Sbjct: 170 SDDFPVPALLEVRGEVFFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARR 229

Query: 236 -LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L    HG+G+T     K Q+E    +   G PV     +      +          R  
Sbjct: 230 KLRMICHGIGRTEGFSPKTQHEAYTALSVWGLPVAEQTARVRGLAAVQERIGYWGEHRYE 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L ++IDG+V KVD+ +LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP
Sbjct: 290 LQHEIDGVVVKVDDVALQRRLGATSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A + PV + G+ +  ATLHN   +K            + + +GD V++++AG+VIP+V+
Sbjct: 350 FAFMTPVKVAGSTVGLATLHNAAEVKR-----------KGVLIGDTVMIRKAGDVIPEVL 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +V+ R    + F  P+ CP C + +         +  A  RC    +C AQ  ER+ H
Sbjct: 399 GPVVDLRDGTEREFVMPTTCPECGTPL-----APAKEGDADIRCPNARSCPAQLRERVFH 453

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
              R A +IEGLG +      K    A  I    D+F L       T       G    +
Sbjct: 454 VAGRGALDIEGLGYEAATALLK----AGVIADEGDLFALTEDDLLRTELFRTKAGTLSAN 509

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
            T L  ++ K + ++L R + +L IRHVG   AR+LA  +    +        +A     
Sbjct: 510 GTRLLQNLQKAKKVALWRVLVALSIRHVGPTAARALATEFGDLDSIMSASTERLAA---- 565

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
                 V  VG  IA A+ E++    +   V+             + +V   +E   +V 
Sbjct: 566 ------VEGVGPTIAAALTEWFTVDWHRAIVDKWRGAGVRMADERDASVPRTLEGLTVVV 619

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L    R  A+E +   G   +  +S+KTD ++ GD+PGSK +KA +LGV I++E+ F
Sbjct: 620 TGSLAGFSRDDAKEAILARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPILDEDGF 679

Query: 715 LFLLQQYN 722
             LL +  
Sbjct: 680 RKLLAEGP 687


>gi|163788595|ref|ZP_02183040.1| putative DNA ligase [Flavobacteriales bacterium ALC-1]
 gi|159875832|gb|EDP69891.1| putative DNA ligase [Flavobacteriales bacterium ALC-1]
          Length = 664

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/706 (32%), Positives = 368/706 (52%), Gaps = 49/706 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E+  H+  YY      I D E+D   +   A+  A P+     DPN P  +
Sbjct: 4   KQKIEILREELRQHNYNYYILDNATISDYEFDIKLKELQALEEANPEFF---DPNSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+  +     H     SL+  ++ EDL  + TRI +      D  + +  E K DG 
Sbjct: 61  VGGEITKNFNTTVHDFRMYSLDNSYSKEDLLDWETRIKKMV----DGEVQYNCELKYDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V A  RGDG  G++V+A ++ I T+P  L  + PE  ++RGE+ +    
Sbjct: 117 SMNLTYENGKLVRAVTRGDGVQGDEVTANVKTIKTVPLQLKGDFPERFDIRGEIILPIEG 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           FL +N+E IA   +PY NPRN ASG L+  +  ++  R L   ++ + K + +  + Q+E
Sbjct: 177 FLKMNEERIANDEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYSI-KGNNLNIQSQFE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V    +  N+   ++ Y       R  LPY+IDG+V KV++   Q +LG
Sbjct: 236 GLKKAREWGFKVPKEAKLVNSIDAVLDYVEYWDEHRHNLPYEIDGVVVKVNDLYQQDELG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++PRW +++KF  +Q STRL +I  Q+GRTG +TPVA LEPV + G ++  A+LHN 
Sbjct: 296 FTAKAPRWAMAYKFKAEQVSTRLNEITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR GD V V++ GE+IPK++ + +++R  D++P  + S CP 
Sbjct: 356 DQIEKL-----------DIREGDEVFVEKGGEIIPKIIAVDLSKRPEDSKPTVYISCCPE 404

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C++ + R          A H C     C  Q + R++HF+SR A +IEGLG + +    K
Sbjct: 405 CETTLERIEGE------AKHYCPNYNGCPPQVVGRIQHFISRKAMDIEGLGGETVALLVK 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  +D++ L   Q     ++       + S  NL + +   + I  ER +F 
Sbjct: 459 E----GLIKDYSDLYELTVAQVIPLERMA------EKSAENLINGVEVSKQIPFERVLFG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LAK+Y S                   L LI V  +G+ IA+++VEF+
Sbjct: 509 LGIRYVGETVAKKLAKHYKSIDALMFAT----------TLDLIAVDEIGERIAESVVEFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
               N   +E L           +K  +   +++   +V +G  + I R++ ++ +   G
Sbjct: 559 SLGENRKIIERLKSFGVQLEISADKLANQTDKLKGFSIVVSGVFETISRNELKKLIEDNG 618

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           A VS+ +S KT  ++ GD  G SK  KA+ L + I+ E++FL  L+
Sbjct: 619 AKVSSSISSKTSYLVAGDKMGPSKRTKAESLNIPIITEQEFLNKLK 664


>gi|282889962|ref|ZP_06298497.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500155|gb|EFB42439.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 668

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/711 (32%), Positives = 385/711 (54%), Gaps = 46/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++   + +    L  +I  H+  YY   +P+I D E+D L  + + +    P+   S   
Sbjct: 1   MTKPSSHQSYQELCNQIWSHNKAYYVDHRPVISDEEFDHLMHQLEQMEKEHPEWISSA-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G  +      V H  P LSL   ++ ++++ FI R+ +  + +D   + F+ E
Sbjct: 59  -SPTQRVGEMLTEGFQTVAHRTPMLSLANSYSKDEVQDFIHRVKKLTRSQD---VAFSCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
            K+DG  I+ ++EKG FV    RGDG  G+D++  +R +   P  L   + P+ +EVRGE
Sbjct: 115 LKMDGIAISAQFEKGIFVRGITRGDGKKGDDITQNLRTVAAFPLQLIGPSAPDFLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249
           +++ K  F  LN E    G   +ANPRNAA+G L+ L+P +  R  L+   +G+G+ S+ 
Sbjct: 175 IFMPKQVFQKLNAEKELEGEDLWANPRNAAAGSLKLLDPNETRRRKLDVVFYGIGQDSQD 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q+     ++  G P+ + V + +T   I  +  +++++R++LP++IDG+V K+D  
Sbjct: 235 ALTSQFACHALLKSYGLPILHQVEKCHTLEEIWEFVEKVRTLRASLPFEIDGVVVKLDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + QK+LG   ++PRW +++KFA +QA T +  I +Q+GRTG+LTPVA L+PV + G+ I 
Sbjct: 295 AEQKRLGSTGKNPRWAVAYKFAAEQAETDIYSITVQVGRTGVLTPVAELKPVFLAGSTIA 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNE+ +             +DIR GD V++++ G+VIPKVV +  ++R  D+ P+ 
Sbjct: 355 RATLHNEEEV-----------LRKDIREGDSVIIEKGGDVIPKVVSVNFDKRKSDSHPWK 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + V R ++        A +C   L C  QQL RL +F  + A +IE +G++
Sbjct: 404 MPTHCPSCGALVARSVDE------VAVKCPNTLHCPEQQLRRLIYFAGKFAMDIEHMGEK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   +       ++ P+DI+ L   Q         + GF   SV NL  SI K +++S
Sbjct: 458 VVEQLVR----LGFVKRPSDIYALTSEQLF------QLEGFKTKSVENLITSIEKSKDVS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RFI +LGI+HVG   A  LAK   +     Q     +          +++  +G+ +A
Sbjct: 508 FSRFIMALGIKHVGEGTAELLAKRAGNVHILMQMTTEEL----------LQIEGIGEKVA 557

Query: 610 QAIVEFYQNPRNICAVE-ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            AIVE++ + RN   ++  L + V P   +   +     + K  V TGTL++  R  A  
Sbjct: 558 TAIVEYFADARNQEEIQLLLQRGVLPQEVKSISHKGHPFDAKTFVLTGTLKQYTRPAAAT 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G  V+  +S KTD ++ G++PGSKL+KA+ L V+I+ EE+F  +L 
Sbjct: 618 LIKERGGKVTNSVSSKTDYLLAGEDPGSKLDKAKSLQVRILTEEEFQAMLD 668


>gi|11095423|gb|AAG29863.1|AF313764_6 DNA ligase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|49284|emb|CAA77966.1| DNA ligase [Zymomonas mobilis subsp. mobilis CP4]
 gi|382210|prf||1819268B DNA ligase
          Length = 731

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/733 (39%), Positives = 440/733 (60%), Gaps = 51/733 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + LS EQA  EL  L + IS++D  Y+    P + DSEYDAL  R   I   FPDL R  
Sbjct: 24  KNLSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIR-- 81

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  K+G   N  L K+ H    LSL+  +  +D+  F+ R+ RF+  K++ ++  T
Sbjct: 82  -PDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAVICT 140

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
           +EPKIDG   ++RYEKG    A  RGDG  GEDV+  +R I  IP+ L   N PEIIE+R
Sbjct: 141 VEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEIIEIR 200

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GEVY++K+DF ALN       +K +ANPRNAA+G LR+L+P    R  L F  HG G+ +
Sbjct: 201 GEVYMAKSDFTALNARQTEENKKLFANPRNAAAGSLRQLDPNITARRSLRFLAHGWGEAT 260

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            + A  QY M++ +   G  V+N + +A+    ++ +Y ++++ R+ L +DIDG+VYK+D
Sbjct: 261 SLPADTQYGMMKMIESYGLSVSNLLARADDIGQMLDFYQKIEAERADLDFDIDGVVYKLD 320

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q++ G  AR+PR+ ++HKF  ++A T LLDI+IQ+GRTG+LTPVA+LEPV +GG +
Sbjct: 321 QLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVGGVV 380

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +++ATLHN D I+ L            +R GDRVLV+RAG+VIP++V+ +      D   
Sbjct: 381 VSSATLHNSDEIERL-----------GVRPGDRVLVQRAGDVIPQIVENLTP--DVDRPI 427

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP  CP+C S   R+          A RCTGGL C AQ++E L HFVSR AF I+GLG
Sbjct: 428 WHFPHRCPVCDSVARREEGE------VAWRCTGGLICPAQRVEALCHFVSRTAFEIDGLG 481

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K  ++ FF  +     I  PADIF L +++Q    +     G+G++SV NL  +I+KRR 
Sbjct: 482 KSHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDKRRK 533

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN------IIAHNNDDWLSLIR- 600
           +  +RF+F+LGIRHVGA  AR LAK Y ++ NF   I+       I+  ++++     + 
Sbjct: 534 VPFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQK 593

Query: 601 -----------VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
                      +P +G  I +++++F+    N   V  LL+EV       E   SS +  
Sbjct: 594 RVDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFE-LASSPLSG 652

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K +VFTG+LQKI R +A+     LGA V++ +S+KT++++ G+  GSKL KA++L + I+
Sbjct: 653 KIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISII 712

Query: 710 NEEQFLFLLQQYN 722
           +E+++  +++   
Sbjct: 713 DEDRWHRIVENGG 725


>gi|83816597|ref|YP_445022.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855]
 gi|123739757|sp|Q2S459|DNLJ_SALRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83757991|gb|ABC46104.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855]
          Length = 690

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/701 (31%), Positives = 370/701 (52%), Gaps = 49/701 (6%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + +H+  YY    P++ D+EYD L ++   +   +P L   + P+ P +++GG +   L 
Sbjct: 32  LRHHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPVL---QTPDSPTHQVGGPVRDELG 88

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            VTH  P LSL+ ++  +++R F         +    ++ +  EPK DG  + + YE G+
Sbjct: 89  TVTHPAPMLSLKAVYEEDEVRNFAETCREELGR---ETVTYIAEPKFDGLAVELIYEDGR 145

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVYISKNDFLALNDE 204
            V  A RGDG +GE+++A ++ I  +P  L  +   +P+ + VRGE Y+ K++F A N  
Sbjct: 146 LVQGATRGDGETGEEITANVKTIKGVPLRLRDDARPVPDRLVVRGEAYMRKDEFNAFNRR 205

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
               G+K +ANPRNAA+G LR+L+     R  L  + + +            E+L+ +  
Sbjct: 206 REEEGKKVFANPRNAAAGSLRQLDSNITARRPLRIYFYEIAPVDGRDFATHAEVLEALPE 265

Query: 264 LGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
            G  V    +R+ +     ++++  +   R  LPY+IDGLV KV++F   + LG R R P
Sbjct: 266 WGLRVCEDHIRRCDGIDAALAHHAALVDRRDDLPYEIDGLVIKVNDFDGHETLGVRDRDP 325

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW  ++KF  ++A+T + D+ +Q+GRTG +TPVA L PV +GG  +T A+LHN++ I   
Sbjct: 326 RWAAAYKFPPRRATTSIEDLFVQVGRTGRITPVAVLAPVEVGGVEVTRASLHNQNEIDR- 384

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     +DIR+GD VL++RAG+VIP+VV +I +ER     P+  P  CP+C S VV
Sbjct: 385 ----------KDIRIGDTVLIERAGDVIPQVVKVIEDERDGTEAPYHIPDACPVCGSEVV 434

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
              + K         CTGG+ C AQ  ERLKH+ SR+A +IEGLG ++ +        A 
Sbjct: 435 LSDDKKQA------FCTGGMTCPAQFRERLKHYASREATDIEGLGDKRAEQLID----AG 484

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            I+  +D++ L++       +        D S  NL D I       L+RF+++LGI  V
Sbjct: 485 LIQTISDLYELEKADLLQLERYA------DKSAQNLIDEIEASLEQDLDRFLYALGIPLV 538

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G+  AR LA+++ +            A  + D  +L  +  +G  +A +I  F+ +  N 
Sbjct: 539 GSATARLLAQHFDTLD----------ALVDADEDALTTIDDIGPEVAHSIATFFADDANR 588

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++  +++   ++       ++ +E    VFTG+L+   R   Q +V Q GA  ++ +S
Sbjct: 589 GVIDE-MRDAGLTLTNPYAEDAARLEGLTFVFTGSLEGWTRSAVQRFVEQHGANATSSVS 647

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             TD ++ G   GSK + A   G+ +++E+ F  LL++   
Sbjct: 648 GNTDYVVAGPGAGSKRDDADDRGIPVLDEDAFHALLREQGI 688


>gi|322375289|ref|ZP_08049802.1| DNA ligase, NAD-dependent [Streptococcus sp. C300]
 gi|321279552|gb|EFX56592.1| DNA ligase, NAD-dependent [Streptococcus sp. C300]
          Length = 652

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/701 (30%), Positives = 361/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +   +       +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKELPQP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGVLVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A +   I  +  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LEHLEQLGFVVNPKRILAKSIDEIWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR GD V+V +AG++IP V+ ++ ++R  + +    PS CP C
Sbjct: 351 YI-----------AEKDIRKGDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPSNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 DSHLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L+              G  + S + LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLKEEDFLLLE------GVKEKSASKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IAQ++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAQSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   ++      V+           + +    +V TG L+++ R +A+  +  LGA 
Sbjct: 552 TEGSKILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KT++++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|121634462|ref|YP_974707.1| DNA ligase [Neisseria meningitidis FAM18]
 gi|166216218|sp|A1KSS7|DNLJ_NEIMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120866168|emb|CAM09908.1| putative DNA ligase [Neisseria meningitidis FAM18]
          Length = 841

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/842 (30%), Positives = 392/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF+ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMLKADFVALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             + F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 -----TLQRRQQTSTTKIENILGFGD----------------VSVTNLYDSINKRRNISL 550
                TLQ+ ++T+   +                            N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + +   +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|184201319|ref|YP_001855526.1| NAD-dependent DNA ligase [Kocuria rhizophila DC2201]
 gi|254781351|sp|B2GL64|DNLJ_KOCRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183581549|dbj|BAG30020.1| NAD(+)-dependent DNA ligase [Kocuria rhizophila DC2201]
          Length = 766

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/755 (29%), Positives = 362/755 (47%), Gaps = 73/755 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R+E + L   +      YY + +P+I D+EYD L R  +      P+L  +   + P
Sbjct: 27  EALREEYAQLSDRVREARAAYYVHDQPVISDAEYDQLYRSLEEFEALHPELKAN---DSP 83

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPK 133
             ++GGE+  +   V H     SLE +++ ++L  ++ R  +   +      + +  E K
Sbjct: 84  TQEVGGEVGAAFSPVKHLEKMYSLEDVFSTDELVAWLERAQKQVAELPGAPEVAWLSEVK 143

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  + + Y  G  V AA RGDG +GED++  +  I TIP+ L   N+PE +EVRGEV+
Sbjct: 144 IDGLAVNLLYRDGVLVRAATRGDGTTGEDITHNVATIKTIPQRLSGENLPEEVEVRGEVF 203

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFA 251
           IS  DF  LN+ M+  GR P+ANPRNAA+G LR+ +P    R  L+ FVHG+G    +  
Sbjct: 204 ISSKDFRTLNEAMVEEGRAPFANPRNAAAGSLRQKDPQVTARRPLSMFVHGIGYVRGVDL 263

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q E  + +R  G PV+   R  +T   ++ +  E    R  L ++IDG+V KVD+   
Sbjct: 264 ETQSEAYEILRGWGLPVSPYSRVLSTVAEVLEFIAEFGDKRHALLHEIDGIVVKVDDRRT 323

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R PRW +++K+  ++ +T L+DI + +GRTG +TP   ++PV + G+ +  A
Sbjct: 324 QFRLGYTSRVPRWAVAYKYPPEEVNTTLVDILVNVGRTGRVTPFGLMDPVRVAGSTVEMA 383

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D ++            + + +GD V++++AG+VIP++V  +V  R    + F  P
Sbjct: 384 TLHNQDMVRA-----------KGVLIGDTVVLRKAGDVIPEIVGPVVALRDGSEREFVMP 432

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC     C +Q  ER+ H   R AF+IE LG++  
Sbjct: 433 AECPSCGTPL-----RPAKEGDVDIRCPNAETCPSQLKERVNHAAGRGAFDIEALGEEAA 487

Query: 492 DFFFKS---------EDPAFSIRIPADIFTLQ-------------RRQQTSTTKIENILG 529
               +          E     +R  A +F L              RR  T     E +  
Sbjct: 488 RALTQPVPLDAPDGTELSVPPLRNEAGLFDLTPEDLRDVMVWRDARRTVTDEETGEKVQR 547

Query: 530 FGD-------------------VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
                                  +   ++  + + ++  L R + +L IRHVG   ARSL
Sbjct: 548 VTPELVPYFWTKPTKARPSVPSKTTEQMFAQLEQAKDTELWRVLVALSIRHVGPTAARSL 607

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A    S     Q     +A              VG +IAQA+ EF+  P     VE    
Sbjct: 608 ATSLRSMDAIRQADPETLAGT----------DGVGPVIAQAVQEFFAEPWRRRVVEQWAA 657

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
                    +++    +E   +V TG+L+   R  A+E + + G   S  +S+KT  ++ 
Sbjct: 658 AGVRMEEEVDESTPRTLEGVTVVVTGSLEGYSRDSAKEAILKRGGKASGSVSKKTHFLVA 717

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GDN G+KL+KA+ LGV +++E  F  LL Q     
Sbjct: 718 GDNAGTKLDKAESLGVPVLDEAGFEQLLAQGPEAF 752


>gi|15672401|ref|NP_266575.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. lactis
           Il1403]
 gi|81538437|sp|Q9CIE4|DNLJ_LACLA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|12723294|gb|AAK04517.1|AE006278_8 DNA ligase [Lactococcus lactis subsp. lactis Il1403]
 gi|326405996|gb|ADZ63067.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis CV56]
          Length = 654

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/703 (31%), Positives = 360/703 (51%), Gaps = 51/703 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
               ++  L ++++ +   YY   +P + DSEYD L +    +    P L R+   + P 
Sbjct: 2   NIESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRA---DSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           ++ GG +     K  H     SL  +++ E+L  +  R+ +     +  +  +  E KID
Sbjct: 59  HRTGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERVRK-----EIANPEYICELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YE G  + AA RGDG +GE+++  ++ I  +P  L   I   I VRGE Y+ +
Sbjct: 114 GLSLSLYYENGLLMTAATRGDGTTGENITENVKRIKDVPLKLKEAI--DIVVRGEAYLPR 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            +F  LN E    G  P+ANPRNAA+G LR+L+   +  R L  F++   + S      Q
Sbjct: 172 KNFAKLNKERELEGATPFANPRNAAAGTLRQLDTKIVAKRGLATFLY--QEASPATNDTQ 229

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E+L+    LGF VN   + A     I  +  E   +R  LPYDIDG+V KV+  + Q++
Sbjct: 230 EEVLEYFEELGFQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNNLAEQEE 289

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++PRW I++KF  +QA T +L +D  +GRTG++TP A + PV +    +  ATLH
Sbjct: 290 LGFTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLH 349

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N DYI+            +DIR+GD VL+ +AG++IPKV  +++++R    +    P+ C
Sbjct: 350 NVDYIE-----------EKDIRIGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGLEIPTKC 398

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S ++   +        A RC   L C AQ  E+L HF SRDA NI GLG   +   
Sbjct: 399 PECGSELIHFEDE------VALRCVNPL-CPAQIREKLIHFASRDAMNIVGLGPSVISQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F  +     +   AD++ L      +  K++      +     +  +I + R  S E+ +
Sbjct: 452 FDKK----LVADVADLYQLTIEDLLTLDKVK------ETLAQKIVSAIAQSRENSAEKLL 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRHVG + A+ L + + + +  ++     I+           +P +G +IA A+V 
Sbjct: 502 FGLGIRHVGGKAAKLLLERFANLRALSKATEEEIS----------EIPSLGGVIATAVVS 551

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +++       ++ L             N+   +  K +V TG L  ++R +A+E +  LG
Sbjct: 552 YFETDGAKILLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTLKRSEAKEKLEALG 611

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A VS  +S+KTD+++ G+  GSKL KAQ LG++I +E+  L L
Sbjct: 612 ANVSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL 654


>gi|281490961|ref|YP_003352941.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147]
 gi|281374719|gb|ADA64239.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147]
          Length = 654

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/703 (31%), Positives = 360/703 (51%), Gaps = 51/703 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
               ++  L ++++ +   YY   +P + DSEYD L +    +    P L R+   + P 
Sbjct: 2   NIESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRA---DSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           ++ GG +     K  H     SL  +++ E+L  +  R+ +     +  +  +  E KID
Sbjct: 59  HRTGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERVRK-----EIANPEYICELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YE G  + AA RGDG +GE+++  ++ I  +P  L   I   I VRGE Y+ +
Sbjct: 114 GLSLSLYYENGLLMTAATRGDGTTGENITENVKRIKDVPLKLKEAI--DIVVRGEAYLPR 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            +F  LN E    G  P+ANPRNAA+G LR+L+   +  R L  F++   + S      Q
Sbjct: 172 KNFAKLNKERELEGAAPFANPRNAAAGTLRQLDTKIVAKRGLATFLY--QEASPATNDTQ 229

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E+L+    LGF VN   + A     I  +  E   +R  LPYDIDG+V KV+  + Q++
Sbjct: 230 EEVLEYFEELGFQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNNLAEQEE 289

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++PRW I++KF  +QA T +L +D  +GRTG++TP A + PV +    +  ATLH
Sbjct: 290 LGFTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLH 349

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N DYI+            +DIR+GD VL+ +AG++IPKV  +++++R    +    P+ C
Sbjct: 350 NVDYIE-----------EKDIRIGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGLEIPTKC 398

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S ++   +        A RC   L C AQ  E+L HF SRDA NI GLG   +   
Sbjct: 399 PECGSELIHFEDE------VALRCVNPL-CPAQIREKLIHFASRDAMNIVGLGPSVISQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F  +     +   AD++ L      +  K++      +     +  +I + R  S E+ +
Sbjct: 452 FDKK----LVADVADLYQLTIEDLLTLDKVK------ETLAQKIVSAIAQSRENSAEKLL 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRHVG + A+ L + + + +  ++     I+           +P +G +IA A+V 
Sbjct: 502 FGLGIRHVGGKAAKLLLERFANLRALSKATEEEIS----------EIPSLGGVIATAVVS 551

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +++       ++ L             N+   +  K +V TG L  ++R +A+E +  LG
Sbjct: 552 YFETDGAKILLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTLKRSEAKEKLEALG 611

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A VS  +S+KTD+++ G+  GSKL KAQ LG++I +E+  L L
Sbjct: 612 ANVSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL 654


>gi|42521704|ref|NP_967084.1| DNA ligase [Bdellovibrio bacteriovorus HD100]
 gi|81618744|sp|Q6MRL9|DNLJ_BDEBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|39574234|emb|CAE77738.1| DNA ligase [Bdellovibrio bacteriovorus HD100]
          Length = 684

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/709 (34%), Positives = 377/709 (53%), Gaps = 53/709 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L++ IS HD  Y+   KP I D EYD L      I    P     +  + P  +
Sbjct: 21  KKRHEELKKIISEHDHNYHVLDKPTITDYEYDQLFAELLDIEK-NP--KGLDLSDSPSQR 77

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H +P LSL   ++ ED+ +F  R+ +F   +D   + +  E K DG 
Sbjct: 78  VGGTVLEGFTKAQHRLPMLSLANSYSPEDIFEFDERVRKFLNTED--PVEYLCELKFDGL 135

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKN 196
            + + YE G+ V A  RGDG  GEDV+  I+ I +IP  LS  N P ++EVRGEV + K 
Sbjct: 136 SMELIYENGQLVRAITRGDGTVGEDVTHNIKTIKSIPLKLSHKNPPPLLEVRGEVLMFKE 195

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           DF  LN+     G++ +ANPRNAA+G +R+L+      R L FF + LG         Q 
Sbjct: 196 DFARLNETQQENGQQTFANPRNAAAGTVRQLDSRIAASRPLRFFGYALGAVEGETFNTQK 255

Query: 256 EMLQKMRCLGFPV-----NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + +     G P       + +  A     +V YY+ ++ +R  LP+DIDG+V KV+   
Sbjct: 256 NIQEYFNDHGIPTVLPYKEDLLVVAKGPEEVVKYYHHIEKVRPKLPFDIDGVVIKVNSLR 315

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  ARSPRW  + KF  +QA T + DI +Q+GRTG LTPVA ++PV +GG  +TN
Sbjct: 316 LQEDLGLVARSPRWATAAKFKPEQAQTTVEDIVVQVGRTGALTPVAIMKPVKVGGVTVTN 375

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERHPDAQPFS 429
           ATLHN+D I             +DIR+GD V+++RAG+VIP+VV+++  ++R  D  P+S
Sbjct: 376 ATLHNQDEITR-----------KDIRIGDTVIIQRAGDVIPEVVEVVNPDKRPADRLPYS 424

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S  V+             RC   L C A   E LKHFV+R A NI+ +G +
Sbjct: 425 IPERCPACDSVAVKAEGE------VVTRCVNPL-CIAVVKESLKHFVARRAMNIDKVGDR 477

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++    ++     +   +D + L + Q  S  +       GD S  N+  SI   +N +
Sbjct: 478 LIETLVDNK----LLTRFSDFYRLTKEQILSLERQ------GDKSADNIIKSIENSKNPT 527

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFIF+LGIR VG +  + LA ++L+   F +     +          ++VP +G  +A
Sbjct: 528 LARFIFALGIRFVGEQTGKHLADHFLTIDKFLEASEEEL----------LQVPEIGAKVA 577

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++I ++  NP+ +  V+A + E+   I    +     +     + TGTL  ++R  A++ 
Sbjct: 578 KSIRDWTGNPKLVDEVKA-MIELGVKIAGPVRAQEGSLSGMSFLITGTLP-VKRDDAKDL 635

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + G  +   +S K + ++VGD+PGSK+EKAQ LGVKI++ E+   ++
Sbjct: 636 IERNGGKILGSVSSKLNYLVVGDDPGSKVEKAQGLGVKIISWEELQAMI 684


>gi|325197886|gb|ADY93342.1| DNA ligase, NAD-dependent [Neisseria meningitidis G2136]
          Length = 841

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/842 (30%), Positives = 392/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHICRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 RQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 -----TLQRRQQTSTTKIENIL----------------GFGDVSVTNLYDSINKRRNISL 550
                TLQ+ ++T+   +                            N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + +   +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQAQAVSLPAAQYAEPQRWIARLPGFKISENKAQALWELAGKSIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKSLPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|189347498|ref|YP_001944027.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245]
 gi|254781283|sp|B3EFT6|DNLJ_CHLL2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189341645|gb|ACD91048.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245]
          Length = 673

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/715 (31%), Positives = 366/715 (51%), Gaps = 50/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A  E++ L +EI  H+  YY  ++P+I D E+D L  +  A+    PDL     P
Sbjct: 1   MDRAMAADEIARLRKEIERHNYLYYVEAEPVISDYEFDRLLEQLIALERLHPDLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++  S   V H  P LSL   +++E++  F  R+ R    +         E
Sbjct: 58  DSPSLRVGGQITRSFPSVRHREPMLSLSNTYSMEEVADFYRRVRRLLLDEGIGEQEMVAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI------- 184
            K DG  +++ Y  G  V  A RGDG  G+D++  +R I +IP  L  +  E        
Sbjct: 118 LKFDGVAVSLIYRNGLLVQGATRGDGVQGDDITVNLRTISSIPLRLETSASETLSGSDRE 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
           IEVRGEV++ K DF  LN+      R  +ANPRNA +G L+  +  ++ R    FV    
Sbjct: 178 IEVRGEVFMPKEDFDRLNEGRPEEDR--FANPRNATAGTLKLQDSAEVARRRMTFVAYFL 235

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           K         ++ L+ +  LGF   +  R     H I  +  E    R  LPY+ DG+V 
Sbjct: 236 KGIGDQHMPHFDRLKLLGKLGFFTGDHYRLCPELHDIERFIGEWSEKRWKLPYETDGVVL 295

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K++   L ++LG  ++SPRW I++K+  +QA T LL +  Q+GR G +TPVA L PV + 
Sbjct: 296 KLNAVWLWERLGATSKSPRWAIAYKYPAQQAITELLGVVFQVGRLGTITPVAELRPVKLA 355

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ ++ +TLHN D I+ L            +RV DRV+V+++GEVIPK++ +  +     
Sbjct: 356 GSTVSRSTLHNFDEIERL-----------GVRVHDRVVVEKSGEVIPKIIRVAEDSGSLF 404

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           + P   P  CP C + + R  N        +  C     C AQ   R+ H+ SR+A +I+
Sbjct: 405 SVPIVVPERCPSCDTPLTRPENE------VSWYCPNEEGCPAQIRGRMLHYASRNAMDIQ 458

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
            LG   +D           ++ P D+++LQ        ++E +   G  S  NL  +I +
Sbjct: 459 SLGIALVDQLVGR----GLVKDPGDLYSLQ------LPQLEPLERMGTKSSINLVRAIEE 508

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R  S +R +++LGIRHVG   AR LA  Y  + +  +     +A           VP +
Sbjct: 509 SRTKSYDRLLYALGIRHVGQATARELAGAYPYFASLHEAGEQELA----------EVPDI 558

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G ++A++I++F+  P     ++ L +   P   G+ ++ V++  E + ++FTG L++  R
Sbjct: 559 GPVVARSIIDFFSKPWVQAMLDKLEQAGLPMRAGKEKEQVNNNFEGQSVIFTGGLERHVR 618

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+E V + G  + + +S+KT +++ G   GSKLE+A +LGV+++ E++F  +L
Sbjct: 619 QEAEEMVRERGGRIVSSVSKKTSLVVAGKEAGSKLERALKLGVRVIGEDEFEAML 673


>gi|333030674|ref|ZP_08458735.1| DNA ligase [Bacteroides coprosuis DSM 18011]
 gi|332741271|gb|EGJ71753.1| DNA ligase [Bacteroides coprosuis DSM 18011]
          Length = 667

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/708 (31%), Positives = 362/708 (51%), Gaps = 50/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A+  +  L + +   +  YY  ++P I D E+D L +    +    P     +DPN P +
Sbjct: 3   AKDRIDELRKYLHQQNYKYYILNQPEISDKEFDDLLKELQDLEKKNPQY---DDPNSPTH 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +IG +++    +  H  P LSL   ++  ++ +F  R+ +              E K DG
Sbjct: 60  RIGSDIDKRFTQKEHKYPMLSLANTYSETEVAEFYERVKKALGS---QPFELCCELKFDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
           T I++ Y+ GK V A  RGDG  G+ V+  ++ I TIP VL   N P+  E+RGE+ +  
Sbjct: 117 TSISLTYQHGKLVEAVTRGDGTRGDMVTDNVKTIRTIPLVLNGDNYPDEFEIRGEILMPW 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E  A     +ANPRNAASG L+  N + +  R L+ +++ L     +   G 
Sbjct: 177 VVFEELNAEKEAREEPLFANPRNAASGTLKLQNSSVVASRKLDAYLYYL-LGENLPYDGH 235

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE L++    GF +++ +R+  T   +  +     + R  LP   DG+V KV+  + Q+ 
Sbjct: 236 YENLEEASKWGFKISSEMRKCKTLQEVYDFIRYWDTARKDLPVATDGIVIKVNSIAQQEG 295

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL ++  Q+GRTG +TPVA L+ V + G ++  A+LH
Sbjct: 296 LGYTAKSPRWAIAYKFQAEEARTRLNEVTYQVGRTGAITPVANLDAVQLSGTVVRRASLH 355

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP-FSFPSF 433
           NED I+GL           D+ +GD V V++ GE+IPK+  +  + R     P   F   
Sbjct: 356 NEDIIRGL-----------DLHIGDMVYVEKGGEIIPKITAVDTDARDEHLGPKVEFIKK 404

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +VR          AAH C     C  Q   R+ HF+SR A NI+GLG + +D 
Sbjct: 405 CPECGTDLVRYEGE------AAHYCPNETGCPTQIKGRIVHFISRRAMNIDGLGPETVDL 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       +   AD++ L + Q     ++      GD S  N+   I + + +   R 
Sbjct: 459 FYRE----GLLHNAADLYQLTKEQILGLERM------GDTSANNIIKGIEESKKVPFARA 508

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG  +A+ LAK + +  + A+               LI +  +G+ IA++I+
Sbjct: 509 LFALGIRFVGETVAKKLAKAFKNIGDLAKA----------SQEELISIDEIGEKIAESII 558

Query: 614 EFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            ++    N   V+ L++             N ++++E   +V +G  +   R++ +  + 
Sbjct: 559 NYFSKEENRIMVQQLVEYGVQLHQNEEEVANQTNKLEGAAIVISGVFKIHSRNEYKALIE 618

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           Q G      +S KTD ++ G+N G +KLEKA++LG+KI++EE+FL L+
Sbjct: 619 QNGGRNVGSISSKTDYVLAGENMGPAKLEKAEKLGIKIISEEEFLLLI 666


>gi|300856841|ref|YP_003781825.1| DNA ligase [Clostridium ljungdahlii DSM 13528]
 gi|300436956|gb|ADK16723.1| DNA ligase [Clostridium ljungdahlii DSM 13528]
          Length = 664

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/705 (32%), Positives = 361/705 (51%), Gaps = 47/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
               + L++ I+YH+D YY    P + D EYD L +    I    P++     P+ P   
Sbjct: 4   EDRYNELKKIINYHNDRYYNQDNPEVSDYEYDMLMQELKNIEREHPEVI---TPDSPTQH 60

Query: 78  IGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +GG     S   V H +P LSL  ++N ED+ +F+  +   +       + F +E KIDG
Sbjct: 61  VGGNAKRESGVLVRHRVPMLSLRDVFNKEDVEQFVDDVKAQFP-----DVEFVVETKIDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
             + +RYE GK + A  RGDG   GEDV+   + I  + + L   IP  +E+RGEVY++K
Sbjct: 116 LSMALRYEDGKLITAITRGDGIVYGEDVTVNAKVINDVVKSLKDKIP-YLEIRGEVYMTK 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  +N+    +G+K +ANPRN A+G LR+L+      R L+ F+  +     +  K  
Sbjct: 175 QAFENVNEHQELLGKKVFANPRNCAAGTLRQLDSKVTKERNLSLFIFNVQDVRGMEFKTH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E  + ++  G  V        T   I      +   R  L YDIDG V K++  + + +
Sbjct: 235 TEGYEFLKKQGIKVIENYTVCKTTGEIWDAIERIGENRGDLDYDIDGAVIKINNLAYRTE 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++ P+W I++K+  ++  T+LLDI + +GRTG +TPVA  EP+ + G  ++ ATLH
Sbjct: 295 LGSTSKVPKWAIAYKYPPEEKETKLLDIQLTVGRTGRITPVAIFEPIRLCGTSVSRATLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D+I  L           D+ VGD ++V ++GE+IPK+  +I  +R      F FP  C
Sbjct: 355 NQDFIDEL-----------DVGVGDTIVVYKSGEIIPKIKKVIHEKRPEGTVKFQFPDKC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V R+      +  A  +CT  + C +  ++R+ +FVSRD  +I+G G   ++  
Sbjct: 404 PVCGSPVARE------EGAADIKCTN-INCPSMLVKRIINFVSRDCMDIKGFGAAYVEQL 456

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    I    DI+ L   +       E I+G  + +   L D+I   +    +R +
Sbjct: 457 VDK----GYIDDIPDIYHLNEYRDKLVE--EGIIG-KEKNTDKLLDAIENSKKNEPQRLL 509

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            SLGI +VG   A+ L KY+ S  N            N D   + +V  +GDI A AI E
Sbjct: 510 ASLGISNVGKSTAKELMKYFKSIDNL----------INADIDEIKKVSDIGDISASAIFE 559

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +++N  N+  +  L K     +    K   + +E  K V TGTL  + R +A+E + + G
Sbjct: 560 YFKNEDNLKIISELAKCGVNMVMNENKEEDNLLEGSKFVITGTLPSMGRTEAKELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             VS  +S+KT  ++ GD PGSK+ KAQ+LGVK+++E + L +L+
Sbjct: 620 GKVSGSVSKKTTYVLAGDAPGSKVTKAQELGVKVISEAELLQMLK 664


>gi|123774771|sp|Q47SC6|DNLJ_THEFY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71914739|gb|AAZ54641.1| NAD-dependent DNA ligase [Thermobifida fusca YX]
          Length = 745

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/744 (31%), Positives = 350/744 (47%), Gaps = 64/744 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R+  + L Q++  +   YY    PII D+EYD L      +   +P L     P+ 
Sbjct: 27  PADVRERHARLSQDLDDYSYRYY-LGSPIISDAEYDQLMAELRDLEAQYPSLV---TPDS 82

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G  ++     V H     SL+  ++   L  +  R+             F  E K
Sbjct: 83  PTQKVGAPISNEFAPVEHLERMQSLDNAFSDAQLEAWAHRVSAEVPVD-----AFLCELK 137

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGE 190
           IDG  + + YEKG+ V AA RGDG  GED++  IR I T+P  L       PE++EVRGE
Sbjct: 138 IDGLAVALVYEKGRLVRAATRGDGRIGEDITLNIRTIDTVPLRLDESRYPAPELLEVRGE 197

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++    F  LN  +   G+ P+ANPRNAA+G LR+ +P    +R L+  VHG+G    +
Sbjct: 198 VFLPVKAFEQLNSRLADEGKPPFANPRNAAAGSLRQKDPRVTASRPLSMLVHGIGAHRGV 257

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q +  + +   G PV++ +R  +T   +  Y       R    Y+IDG+V KVD+ 
Sbjct: 258 TITHQSQSYELLAAWGLPVSDRIRVVSTLDEVREYIAYYAEHRHDPEYEIDGVVVKVDDV 317

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  +R+PRW I++K+  ++ +T+LLDI   +GRTG +TP A LEPV + G+ + 
Sbjct: 318 SLQRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIKTSVGRTGRVTPYAVLEPVKVAGSEVE 377

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +             + + +GD V+V++AG++IP+VV  +V +R    +PF 
Sbjct: 378 FATLHNAQEVAR-----------KGVLIGDTVVVRKAGDIIPEVVGPVVEKRTGTERPFV 426

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +      +  +     RC     C  Q  ERL     R A +IE LG  
Sbjct: 427 MPTECPECGSPL-----GQQKEGDVDLRCPNTRYCKGQLRERLAFIAGRKALDIEALGYV 481

Query: 490 QLDFFFKSEDPAF-SIRIPADIFTLQRRQQTSTTK------------------------I 524
                 +  +PA   +R   D+F+L   Q                               
Sbjct: 482 AATALTQPLEPAEPPLRDEGDLFSLTVEQLLPIRTLVLDPDTAEPKIDPKTGKPKVVSFF 541

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
            N  G     V  L+  + + +   L R + +L IRHVG   A  LA+++ S    AQ  
Sbjct: 542 ANQKGEPKKIVEKLFQQLEEAKKRPLWRVLVALSIRHVGPRAAEDLARHFRSLDAIAQAS 601

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +            V  +G  IA++IV+++    +   VE               +  
Sbjct: 602 EEELEA----------VEGIGPTIARSIVDWFSVDWHREIVEKWRAAGVRMEEEGADDGP 651

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             ++    V TGTL+K  R  A+E V +LG  V+  +SRKTD ++VG NPGSK +KA +L
Sbjct: 652 RLLDGITTVITGTLEKYSRDGAKEAVQKLGGRVTGSVSRKTDFVVVGANPGSKYDKAVKL 711

Query: 705 GVKIMNEEQFLFLLQQYNTTLRIH 728
           GV I++E  F  LL Q     R  
Sbjct: 712 GVPILDEAGFEVLLTQGPEAARAA 735


>gi|56551260|ref|YP_162099.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4]
 gi|59802648|sp|P28719|DNLJ_ZYMMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56542834|gb|AAV88988.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 731

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/733 (40%), Positives = 441/733 (60%), Gaps = 51/733 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + LS EQA  EL  L + IS++D  Y+    P + DSEYDAL  R   I   FPDL R  
Sbjct: 24  KDLSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIR-- 81

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  K+G   N  L K+ H    LSL+  +  +D+  F+ R+ RF+  K++ ++  T
Sbjct: 82  -PDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAVICT 140

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
           +EPKIDG   ++RYEKG    A  RGDG  GEDV+  +R I  IP+ L   N PEIIE+R
Sbjct: 141 VEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEIIEIR 200

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GEVY++K+DF ALN       +K +ANPRNAA+G LR+L+P    R  L F  HG G+ +
Sbjct: 201 GEVYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDPNITARRSLRFLAHGWGEAT 260

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            + A  QY M++ +   G  V+N + +A+    ++ +Y ++++ R+ L +DIDG+VYK+D
Sbjct: 261 SLPADTQYGMMKVIESYGLSVSNLLARADDIGQMLDFYQKIEAERADLDFDIDGVVYKLD 320

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q++ G  AR+PR+ ++HKF  ++A T LLDI+IQ+GRTG+LTPVA+LEPV +GG +
Sbjct: 321 QLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVGGVV 380

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +++ATLHN D I+ L            +R GDRVLV+RAG+VIP++V+ +      D   
Sbjct: 381 VSSATLHNSDEIERL-----------GVRPGDRVLVQRAGDVIPQIVENLTP--DVDRPI 427

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP  CP+C S   R+          A RCTGGL C AQ++ERL HFVSR AF IEGLG
Sbjct: 428 WRFPHRCPVCDSVARREEGE------VAWRCTGGLICPAQRVERLCHFVSRTAFEIEGLG 481

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K  ++ FF  +     I  PADIF L +++Q    +     G+G++SV NL  +I+KRR 
Sbjct: 482 KSHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDKRRK 533

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN------IIAHNNDDWLSLIR- 600
           +  +RF+F+LGIRHVGA  AR LAK Y ++ NF   I+       I+  ++++     + 
Sbjct: 534 VPFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQK 593

Query: 601 -----------VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
                      +P +G  I +++++F+    N   V  LL+EV       E   SS +  
Sbjct: 594 RVDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFE-LASSPLSG 652

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K +VFTG+LQKI R +A+     LGA V++ +S+KT++++ G+  GSKL KA++L + I+
Sbjct: 653 KIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISII 712

Query: 710 NEEQFLFLLQQYN 722
           +E+++  +++   
Sbjct: 713 DEDRWHRIVENDG 725


>gi|268319976|ref|YP_003293632.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785]
 gi|262398351|emb|CAX67365.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785]
          Length = 668

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/716 (29%), Positives = 368/716 (51%), Gaps = 52/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  +A +++  L +++    D YY    P++ D+ YD   +    +   FPDL  +
Sbjct: 1   MAVLTHSEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       + + +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y KGK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYTKGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD
Sbjct: 232 -RNITSQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +
Sbjct: 291 DLSLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTI 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LHN DY++            + +R+GD V + +AG++IP++  +++++R  D++P
Sbjct: 351 VSRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            I   AD++ L   Q         +  F + S+TNL  SI   + 
Sbjct: 453 PRIVKQLIDK----GFINDVADLYHLTPDQL------GQLDHFKEKSITNLLSSIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S E  ++ LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ 
Sbjct: 503 NSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGET 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRH 664
           IA+++  ++  P     ++ L              E+   +  + K +V TG L    R 
Sbjct: 553 IAESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSAFTRS 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 613 EFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|296119554|ref|ZP_06838112.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306]
 gi|295967437|gb|EFG80704.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306]
          Length = 700

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/720 (29%), Positives = 352/720 (48%), Gaps = 50/720 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L+ E+A+K  + L QE+  H + YY   +P I D+++DAL +   A+  A P L    
Sbjct: 8   DQLNPEEAQKRWAELAQEVRRHRELYYNE-QPAIPDADFDALFQELVALESAHPQLVV-- 64

Query: 70  DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            P+ P  ++G       +   + H    +SL+ ++N ++L+ ++ R           +  
Sbjct: 65  -PDSPTQEVGSAPAADSAFADIEHLERLMSLDNVFNADELQDWLDRT---------PAEA 114

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPE 183
           +  E KIDG  I + Y  GK   AA RGDG  GED++A  R I +IP  L       +P 
Sbjct: 115 YLAELKIDGASIDLVYRDGKLATAATRGDGRVGEDITANARVIESIPHELQGSEEYPVPA 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
           ++E+RGE+Y+   DF ALN+E  + G++ +ANPRN+A+G LR  NP D+  R L    HG
Sbjct: 175 LVEIRGEIYMRPEDFEALNEERASEGKQAFANPRNSAAGGLRMKNPDDVKKRRLRLVAHG 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           LG         Q++    +   G PV+    +  T   +          R    +++DG+
Sbjct: 235 LGAREGFTPTSQHDAYAAIAAWGLPVSPYTERVTTSKEVQDKVKYWADHRHDAEFEMDGV 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD+   Q+ LG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A ++PV 
Sbjct: 295 VIKVDDLGSQRSLGATSRAPRWAIAYKYPPEEVTTKLRNIEVGVGRTGRVTPYAVMDPVF 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ ++ ATLHN+  +K            + + +GD V++++AGE+IP+V+  +  +R 
Sbjct: 355 VSGSTVSMATLHNQSEVKR-----------KGVLIGDTVIIRKAGEIIPEVLGPVEEKRD 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                + FP  CP C +++         +  A  RC     C AQ   RL++   R AF+
Sbjct: 404 GTETEWVFPENCPSCGTKL-----APQKEGDADWRCPNTRTCPAQLSARLEYLAGRGAFD 458

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IE LG++      +       +   +D+F L       +       G  + S   L  ++
Sbjct: 459 IEALGEKGAIDLIER----GVLEDESDLFDLTEELLKKSEVYTTKAGNVNASGKKLLSNL 514

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              R+  L R + +L IRHVG   AR++A  Y S            A  + D   +    
Sbjct: 515 ETARHTDLWRVLVALSIRHVGPTAARAIASRYGSLD----------AARSADVEDIAETD 564

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG +IA++  ++++   +   V+                    +E   +V TGTL+   
Sbjct: 565 GVGLVIAESFKDWFEIDWHRTIVDKWAAAGVTMAIDASDKPEQTLEGLTIVVTGTLENFS 624

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R  A+E +   G   S  +S+KTD ++ G+N GSK  KA+ LGV I+NE  F  LL   +
Sbjct: 625 RDSAKEAIISRGGKASGSVSKKTDFVVAGENAGSKETKARDLGVTILNENGFETLLATGS 684


>gi|302542307|ref|ZP_07294649.1| DNA ligase, NAD-dependent [Streptomyces hygroscopicus ATCC 53653]
 gi|302459925|gb|EFL23018.1| DNA ligase, NAD-dependent [Streptomyces himastatinicus ATCC 53653]
          Length = 740

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/743 (29%), Positives = 359/743 (48%), Gaps = 62/743 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR E + L +++  H   YY    PI+ D+E+D L RR +A+    P+L     P+ 
Sbjct: 10  PTEARDEHAKLAEQVEEHRFRYYVKDAPIVSDAEFDRLLRRLEALEEDHPEL---RTPDS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G       +V H    LSL+  ++ ++L  +  RI +        +  F  E K
Sbjct: 67  PTQKVAGAYETEFTEVEHRERMLSLDNAFDDDELGTWADRIAKELGT---GAYHFLCELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L+ + +P ++EVRGEV+
Sbjct: 124 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLTGDRVPALVEVRGEVF 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + +  F  LN  ++   + P+ANPRNAA+G LR+ +P    +R L+  VHG+G       
Sbjct: 184 LPRKAFEELNARLVEAEKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGAREGFDI 243

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK--SIRSTLPYDIDGLVYKVDEF 309
               +  + +   G P     R  +T  G+  Y         R ++ ++IDG V K+DE 
Sbjct: 244 ARLSQAYELLHEWGLPTAAHFRVVDTIEGVREYIAHYGDSEHRHSVEHEIDGAVIKLDEI 303

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  +R+PRW I+ KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + 
Sbjct: 304 PLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGSEVE 363

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F 
Sbjct: 364 FATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFV 412

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C AQ  ER+ +   R + +IE LG  
Sbjct: 413 MPAECPECGTPL-----QPAKEGDVDLRCPNSRSCPAQLRERIFYLAGRKSLDIENLGYV 467

Query: 490 QLDFFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTK----I 524
                 +  +PA   +R   D+F L                    +R  +T   K     
Sbjct: 468 AAAALTQPLEPAEPPLRDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEEKVVTFF 527

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
               G    +   +  +I   +   L R I  L IRHVG   A +LA+ + S    A+  
Sbjct: 528 ATQKGEAKKNALAMLANIEAAKQRPLARIITGLSIRHVGPVAAAALAREFRSLDRIAEAD 587

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNV 643
              +A              VG IIA ++ +++    +   VE   +  V           
Sbjct: 588 EEELAATE----------GVGGIIAASVKQWFAVDWHREIVEKWRRAGVRLEEEAGADEG 637

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              ++   +V TGTL+   R  A+E +   GA V+  +S+KTD ++VGDNPGSK +KA Q
Sbjct: 638 PLPLKGLTVVVTGTLESHTRDGAKEALQNRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQ 697

Query: 704 LGVKIMNEEQFLFLLQQYNTTLR 726
           L V +++++ F  LL+Q     R
Sbjct: 698 LKVPVLDDDGFAVLLEQGPDAAR 720


>gi|260655066|ref|ZP_05860554.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1]
 gi|260630177|gb|EEX48371.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1]
          Length = 670

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/712 (30%), Positives = 350/712 (49%), Gaps = 49/712 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R     L + ++ +   YY    P++ D E+D L     +I    PD  R   P+ P  +
Sbjct: 4   RARYDELVETVNENSYLYYVKDAPVLSDFEWDQLMNELLSIEREHPDWIR---PDSPSRR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG    +  KVTH IP LSLE +++ E+L  ++    +    +      +  E KIDG 
Sbjct: 61  VGGTALDAFEKVTHQIPMLSLEDVFSPEELTGWLAHAEKEIGSQS----EWCCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y+ G FV  A RGDGH GEDV+A +R + ++P  L  ++P ++EVRGEVY+ K  
Sbjct: 117 AISLIYQDGVFVRGATRGDGHVGEDVTANLRTVRSLPLKLRGSVPGLLEVRGEVYMDKTS 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN      G   +ANPRN A+G LR+L+PT  + R L  F++ +    E   + Q +
Sbjct: 177 FEALNRRREEAGEALFANPRNVAAGSLRQLDPTVTSQRNLQVFLYYVMNPHERGFETQSD 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  M  +G PV    R +        +  E +  R  L Y  DG+V+K ++      L 
Sbjct: 237 CLNWMASVGLPVQPAWRVSRGTAEAAQFVEEWRDRRFDLSYGTDGVVFKANKLFDWDLLS 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW ++ K+  ++ +  L  ID+ +GRTG++TPVA  +PV + G  ++ A+LHN 
Sbjct: 297 ATSRTPRWAVAFKYPPEEKTVHLDAIDVSVGRTGVITPVAIFQPVVLSGTNVSRASLHNG 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I             +DIRVGD + V++AGE+IP+VV    + R     PF  P  CP 
Sbjct: 357 GEIAR-----------KDIRVGDWITVRKAGEIIPEVVKSDASRRDGTQTPFIMPERCPS 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   VV+          AA RC   ++C AQ L RL HF SR A ++ GLG+        
Sbjct: 406 CGHPVVQLQGE------AALRCQN-VSCPAQMLARLVHFASRGAMDVRGLGEALAQQLLS 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           S      +   AD++ L   Q     ++      G+ S ++L  ++   +   L+R + +
Sbjct: 459 SR----LVVTLADLYRLTADQLAGLERM------GEKSASSLVQALEGAKKRPLDRLLVA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  VG   AR+L   + S +   Q   + ++          +V  +G  IA ++  + 
Sbjct: 509 LGIPLVGPSAARALVGRFGSLEAIGQATEDELS----------KVEGIGPAIAGSVASWL 558

Query: 617 QNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            +  N   ++        +       +         + +VFTG +  + R +A E    L
Sbjct: 559 ADSANRALLQDFSSLGLEACTSREPTQPAQPGPWTGQVIVFTGEMASMPRSQASELARGL 618

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GA V+  +S KT +++ G+  GSKL+KA  LG+ +++EE+FL  LQ   +TL
Sbjct: 619 GAKVTGSVSSKTTLLVAGEAAGSKLDKANSLGIPVISEEEFLSRLQAAKSTL 670


>gi|258404928|ref|YP_003197670.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692]
 gi|257797155|gb|ACV68092.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692]
          Length = 678

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/721 (34%), Positives = 391/721 (54%), Gaps = 57/721 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  +  ++SL + I +HD  YY    P I D+EYDAL +   A+ H +P+L   +DP
Sbjct: 1   MAEQSVQSRVASLRETIRHHDYLYYVLDAPQISDNEYDALFKELQALEHRYPEL---DDP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G +   +     HS+P  SL+ ++++E+ + ++ R+ R         I F ++
Sbjct: 58  ASPTKRVGQKPLAAFAHREHSLPMASLDNVFSLEEFQTYVQRLERLLP---GEEITFWVD 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVR 188
           PK+DG  + + +E G++V A  RGDG  GEDV+A +R + T+P  L      +P+ IEVR
Sbjct: 115 PKMDGLAVEVIFEAGRYVAACTRGDGRVGEDVTAQMRTVRTVPLQLREEGVEVPDYIEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + ++DF  LN      G +P+ANPRNAA+G +R+L+P     R L FF +G+G   
Sbjct: 175 GEVVMHEDDFALLNKRQTENGARPFANPRNAAAGSVRQLDPEVTAKRPLRFFAYGVGVVR 234

Query: 248 EIFAKG----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              AK     Q E++Q +R LG PV    R A +   + +YY ++ + R +L ++IDG+V
Sbjct: 235 WSGAKTVWSRQSEVMQGLRELGLPVAPKARWAESAAAVQTYYQDLGANRHSLGFEIDGVV 294

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD    Q +LG  +R+PRW ++ KF   QA T L DI +Q+GRTG+LTPVA L PV +
Sbjct: 295 AKVDRLEQQHRLGSTSRAPRWALALKFPAHQAETVLEDIQVQVGRTGVLTPVAVLRPVEV 354

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++ ATLHNED I+            + +RVGD VLV+RAG+VIP+VV  + ++R  
Sbjct: 355 GGVTVSRATLHNEDEIRA-----------KGLRVGDPVLVQRAGDVIPEVVRPLTDKRTG 403

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           + + F FP  CP C S V R  +        A RC    AC AQ +++L HFVS+   +I
Sbjct: 404 EEKTFVFPQTCPACGSPVSRLGDE------VARRCVNA-ACPAQVVQQLIHFVSKAGLDI 456

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++ +  F         +R PAD+F L+ R      ++      GD S  N+  +I 
Sbjct: 457 EGLGERWVQIFVDQ----GLVRSPADLFRLKERDLVPLERM------GDKSARNMIQAIA 506

Query: 544 KRR-NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
             + +  L++ I +LGIR VG   A  LA  +   +  A+  +  + H          +P
Sbjct: 507 SAKSSARLDQLISALGIRLVGRRTAEILATSFEDLEALAEADSETLQH----------IP 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTL 658
            +G  +A ++  F+  P N   +  L +             + + S+ +E  + V TG L
Sbjct: 557 DIGPEVAASLRRFFTTPANQALIRDLHQLGVWPRRETGNGSDADQSAPLEGLRFVLTGAL 616

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R  A++ +   G  V + +S K D ++ G+NPGSKL+KA++L + +++E     LL
Sbjct: 617 SDMSRSAAKDAIESRGGKVVSAVSSKVDYVVAGENPGSKLDKARELDIAVLDETGLHDLL 676

Query: 719 Q 719
            
Sbjct: 677 A 677


>gi|161723110|ref|YP_288664.2| NAD-dependent DNA ligase LigA [Thermobifida fusca YX]
          Length = 731

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/744 (31%), Positives = 350/744 (47%), Gaps = 64/744 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R+  + L Q++  +   YY    PII D+EYD L      +   +P L     P+ 
Sbjct: 13  PADVRERHARLSQDLDDYSYRYY-LGSPIISDAEYDQLMAELRDLEAQYPSLV---TPDS 68

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G  ++     V H     SL+  ++   L  +  R+             F  E K
Sbjct: 69  PTQKVGAPISNEFAPVEHLERMQSLDNAFSDAQLEAWAHRVSAEVPVD-----AFLCELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGE 190
           IDG  + + YEKG+ V AA RGDG  GED++  IR I T+P  L       PE++EVRGE
Sbjct: 124 IDGLAVALVYEKGRLVRAATRGDGRIGEDITLNIRTIDTVPLRLDESRYPAPELLEVRGE 183

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++    F  LN  +   G+ P+ANPRNAA+G LR+ +P    +R L+  VHG+G    +
Sbjct: 184 VFLPVKAFEQLNSRLADEGKPPFANPRNAAAGSLRQKDPRVTASRPLSMLVHGIGAHRGV 243

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q +  + +   G PV++ +R  +T   +  Y       R    Y+IDG+V KVD+ 
Sbjct: 244 TITHQSQSYELLAAWGLPVSDRIRVVSTLDEVREYIAYYAEHRHDPEYEIDGVVVKVDDV 303

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  +R+PRW I++K+  ++ +T+LLDI   +GRTG +TP A LEPV + G+ + 
Sbjct: 304 SLQRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIKTSVGRTGRVTPYAVLEPVKVAGSEVE 363

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +             + + +GD V+V++AG++IP+VV  +V +R    +PF 
Sbjct: 364 FATLHNAQEVAR-----------KGVLIGDTVVVRKAGDIIPEVVGPVVEKRTGTERPFV 412

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +      +  +     RC     C  Q  ERL     R A +IE LG  
Sbjct: 413 MPTECPECGSPL-----GQQKEGDVDLRCPNTRYCKGQLRERLAFIAGRKALDIEALGYV 467

Query: 490 QLDFFFKSEDPAF-SIRIPADIFTLQRRQQTSTTK------------------------I 524
                 +  +PA   +R   D+F+L   Q                               
Sbjct: 468 AATALTQPLEPAEPPLRDEGDLFSLTVEQLLPIRTLVLDPDTAEPKIDPKTGKPKVVSFF 527

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
            N  G     V  L+  + + +   L R + +L IRHVG   A  LA+++ S    AQ  
Sbjct: 528 ANQKGEPKKIVEKLFQQLEEAKKRPLWRVLVALSIRHVGPRAAEDLARHFRSLDAIAQAS 587

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +            V  +G  IA++IV+++    +   VE               +  
Sbjct: 588 EEELEA----------VEGIGPTIARSIVDWFSVDWHREIVEKWRAAGVRMEEEGADDGP 637

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             ++    V TGTL+K  R  A+E V +LG  V+  +SRKTD ++VG NPGSK +KA +L
Sbjct: 638 RLLDGITTVITGTLEKYSRDGAKEAVQKLGGRVTGSVSRKTDFVVVGANPGSKYDKAVKL 697

Query: 705 GVKIMNEEQFLFLLQQYNTTLRIH 728
           GV I++E  F  LL Q     R  
Sbjct: 698 GVPILDEAGFEVLLTQGPEAARAA 721


>gi|289704853|ref|ZP_06501270.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58]
 gi|289558349|gb|EFD51623.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58]
          Length = 797

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/799 (29%), Positives = 363/799 (45%), Gaps = 99/799 (12%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
              + +     R E   L + +      YYQ   P I D+EYDAL RR + +    P+L 
Sbjct: 11  PDPQDIPAADLRAEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELV 70

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-QKKDDNS 125
            +   + P  ++GGE++ +   V H     SLE +++IE+L  +  R  +   Q +   +
Sbjct: 71  SN---DSPTQEVGGEVSEAFAPVRHGARMYSLEDVFSIEELEVWFRRAAQALTQVRPGVA 127

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEI 184
             + +E KIDG  + +RY  G+ V AA RGDG +GEDV+A +R I  IP  L     P  
Sbjct: 128 PRWLVEVKIDGLAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAE 187

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
            EVRGEV++S   F  LN      G+ P+ANPRNAA+G LR+ +P     R L  FVHG+
Sbjct: 188 FEVRGEVFMSSAAFAELNARRAEEGQTPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGI 247

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHG-----IVSYYNEMKSIRSTLPYD 298
           G       + Q+E+   +   G PV+   R+           +V+   E    R  L ++
Sbjct: 248 GSVEAFGLESQHEVYDALAGWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHE 307

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V K D F+ Q+ LG  +R PRW +++K+  ++  T L DI + +GRTG +TP A +
Sbjct: 308 IDGIVLKADAFADQRYLGHTSRVPRWAVAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVM 367

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ ++ ATLHN+D +K            + + +GD V+V++AG+VIP+VV  ++
Sbjct: 368 EPVTVAGSTVSLATLHNQDVVKA-----------KGVLIGDTVVVRKAGDVIPEVVGPVL 416

Query: 419 NERHP------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
             R        + + F  P+ CP C + +         +     RC    +C AQ   R+
Sbjct: 417 PLREKAIEAGRELREFVMPTHCPSCGTPL-----APAKEGDVDLRCPNARSCPAQLAGRV 471

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFK-------------SEDPAFSIRIPADIFTL------ 513
           +H  SR AF++E LG++   +  +               +    I   A IF L      
Sbjct: 472 EHLASRGAFDVEALGEEAARWLVQGPGEDPAEHEGQVRPEGPGPITAEAQIFDLASGTPE 531

Query: 514 ------QRRQQTSTTKIENILGFGD----------------------------------- 532
                      T   +    +                                       
Sbjct: 532 EITGPRGEDGLTDLQRSLGEVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPT 591

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +   L+D + K ++  L R + +L IRHVG   ARSLA  + S            A   
Sbjct: 592 ANTLRLFDELEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMA------ALRAAAEA 645

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
            D   L  +  VG IIA A++E++    +   V+             +++    +E   +
Sbjct: 646 GDRDRLAEIDGVGPIIADALIEWFAEDWHREIVDRWAAAGVVMEDEQDESTPRTLEGLTV 705

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L+   R  A+E +   G   S  +S+KTD ++ G+  GSKL+KAQ LGV +++E 
Sbjct: 706 VVTGSLEGFSRDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEA 765

Query: 713 QFLFLLQQYNTTLRIHDDD 731
            F  LL      +R  D D
Sbjct: 766 GFTALLAGGADAVRPADTD 784


>gi|254804544|ref|YP_003082765.1| DNA ligase [Neisseria meningitidis alpha14]
 gi|254668086|emb|CBA04596.1| DNA ligase [Neisseria meningitidis alpha14]
          Length = 841

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/842 (30%), Positives = 389/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               F A+   + L   + LGF + N           ++++Y +M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQ-----------------RRQQTSTTKIENILGFGDV----SVTNLYDSINKRRNISL 550
            L                    Q  S        G           N+   I   +   L
Sbjct: 539 RLDIPTLQKMKEAADKTVAESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + ++  +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIENKKLVFTG 656
                        +   P+N   +E L    +      E       ++  +  K  V TG
Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|325135742|gb|EGC58354.1| DNA ligase, NAD-dependent [Neisseria meningitidis M0579]
          Length = 841

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/842 (29%), Positives = 391/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  + AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 -----TLQRRQQTSTTKIENIL----------------GFGDVSVTNLYDSINKRRNISL 550
                TLQ+ ++T+   +                            N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + +   +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|300087757|ref|YP_003758279.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527490|gb|ADJ25958.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 687

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/719 (33%), Positives = 388/719 (53%), Gaps = 57/719 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++A+K + +L ++I++H+  YY   +P I D EYD L R    + + FP+LA  E    
Sbjct: 1   MDEAKKRIDTLRKQITHHNYLYYVKDEPEISDQEYDILFRELQILENEFPELASDE---S 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G + + +  ++ H  P LSL   ++ E+L+ +  RI +        ++ F  E K
Sbjct: 58  PTKIVGAKPSKTFSRIKHVKPLLSLANAFSHEELKVWYERIIKSLS---PETVEFVCEHK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + + Y +GK V  A RGDG +GEDV+  ++ I ++P  ++ N+P+  EVRGEV++
Sbjct: 115 IDGLAVAVAYHEGKLVTGATRGDGETGEDVTNNLKTIYSLPHTVADNVPDKFEVRGEVFL 174

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FA 251
             ++FL LN   +      +ANPRNAA+G +R+L+P     R L+ F++GLG      FA
Sbjct: 175 PTDNFLRLNQMRLKQRLPLFANPRNAAAGSVRQLDPNVTAQRPLDIFIYGLGWAEPADFA 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++ LQK+  +GF +N   R  +T   I SYY E    R  LPY+ DG+V KV+++S 
Sbjct: 235 DNHWDTLQKLGEIGFKINPNNRLCHTLEDIQSYYQEWLGKRDQLPYEADGIVIKVNDYSQ 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG+ AR PRW I+ KF   QA TRL DI I +GRTG L P A LEPV +GG  I  A
Sbjct: 295 QESLGQIAREPRWAIAFKFPAPQAITRLKDIGISVGRTGTLNPFAILEPVKLGGVTIQRA 354

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNE+ I+            +DIR+GD+V+V+RAG+VIP++V  I+ +    A+ FS  
Sbjct: 355 TLHNEEDIRR-----------KDIRIGDKVIVQRAGDVIPQIVRPIIEDSSNRAEVFSIT 403

Query: 432 S---------FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                      CP+C + V R            + C    AC AQ  E+L+HFVS+   +
Sbjct: 404 EKLKGPDSKPHCPVCNAVVTRTAGE------VMYYCPNT-ACPAQLAEKLEHFVSKSGMD 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I G+G++    F         I+  AD++ L+              G  + S   L  SI
Sbjct: 457 IRGMGEKLSTAFLNE----GLIKDVADLYNLKTEHLVGRE------GMKEKSAEKLITSI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           +  +N  L   I++LGIRH+GAE A+SLA+ + S    A+               LI +P
Sbjct: 507 SNSKNRPLHNVIYALGIRHIGAENAQSLAREFGSLSELAKA----------SLERLISIP 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQK 660
            +G  IA +++ ++  P N   V  L + +     +  +    SS I  K++V TG+L+ 
Sbjct: 557 GIGVKIADSMLNYFSEPHNQKIVSRLNEILETPTMLPANNAQFSSLISGKEVVITGSLKS 616

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + RH A E + + G +  A ++ KT  ++ G+  G+K++KA++  + I++E+  L +++
Sbjct: 617 MTRHDAWEMIRRAGGIPKADITTKTSYLVAGEKGGTKIKKAKEGKIPIISEDDLLAMVE 675


>gi|42519595|ref|NP_965525.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533]
 gi|81667534|sp|Q74I49|DNLJ_LACJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|41583884|gb|AAS09491.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533]
          Length = 668

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/716 (29%), Positives = 368/716 (51%), Gaps = 52/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  +A +++  L +++    D YY    P++ D+ YD   +    +   FPDL  +
Sbjct: 1   MAVLTHNEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       +S+ +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HSVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYTDGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD
Sbjct: 232 -RNITSQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +
Sbjct: 291 DLSLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTI 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LHN DY++            + +R+GD V + +AG++IP++  +++++R  D++P
Sbjct: 351 VSRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            I   AD++ L   Q         +  F + S+TNL  SI   + 
Sbjct: 453 PRIVKQLIDK----GFINDVADLYQLTPDQL------GQLDHFKEKSITNLLSSIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S E  ++ LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ 
Sbjct: 503 NSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGET 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRH 664
           IA+++  ++  P     ++ L              E+   +  + K +V TG L    R 
Sbjct: 553 IAESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSAFTRS 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 613 EFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|325141882|gb|EGC64324.1| DNA ligase, NAD-dependent [Neisseria meningitidis 961-5945]
          Length = 841

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/838 (30%), Positives = 389/838 (46%), Gaps = 159/838 (18%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  + AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF-KSEDPAFSIRIPADI 510
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++    +     F+     DI
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVLHFADLYRLDI 542

Query: 511 FTLQRRQQTSTTKIENILGFGD----------------VSVTNLYDSINKRRNISLERFI 554
            TLQ+ ++T+   +                            N+   I   +   L RF+
Sbjct: 543 PTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIESGKTPELARFL 602

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------------- 583
           F+LGIRHVG   A++LA+ + + +   +                                
Sbjct: 603 FALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM 662

Query: 584 INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE------------ 614
           I+ ++A         + +P                  + +  AQA+ E            
Sbjct: 663 IDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQND 722

Query: 615 ---------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQK 660
                    +   P+N   +E L    +      E    S      +  K  V TGTL  
Sbjct: 723 KALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPT 782

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV I++E + L LL
Sbjct: 783 LKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840


>gi|282861257|ref|ZP_06270322.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
 gi|282563915|gb|EFB69452.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
          Length = 732

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/741 (28%), Positives = 352/741 (47%), Gaps = 61/741 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR+  + L ++I  H   YY   +P++ D+E+D L R  +A+    P L     P+ P
Sbjct: 15  AEARERHALLSEQIEEHRFRYYVKDQPVVSDAEFDRLMRELEAVEDENPQL---RTPDSP 71

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+ G        V H    LSL+  ++ E+L  +  R+ +   +   +   F  E K+
Sbjct: 72  TQKVAGPYTTEFTSVEHRERMLSLDNAFDDEELAAWAERVAKDVGRPGYH---FLCELKV 128

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + YE G+   AA RGDG +GED++  IR I  IP  L+ + +P ++E+RGEVY 
Sbjct: 129 DGLAVNLTYEHGRLTRAATRGDGRTGEDITPNIRTIAEIPHRLTGDRVPALVEIRGEVYF 188

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
               F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G    +   
Sbjct: 189 PMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGLDID 248

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              +    +R  G P     +  ++  G+  +       R ++ ++IDG+V K+DE  LQ
Sbjct: 249 RLSQAYDLLRDWGLPTARHNKVVDSLDGVREFVRYFGENRHSVEHEIDGVVVKLDEIPLQ 308

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++E V + G+ +  AT
Sbjct: 309 GRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEAVEVAGSEVEFAT 368

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN++ +K            + + +GD V++++AG+VIP+++  +V+ R    + F  P+
Sbjct: 369 LHNQNVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPA 417

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +         +     RC    +C AQ  ER+ +   R   +I+  G     
Sbjct: 418 ECPECGTPL-----RPMKEGDVDLRCPNARSCPAQLRERVAYLAGRKCLDIDHFGYVAAA 472

Query: 493 FFFKSEDPAF-SIRIPADIFTLQRRQQ--------------------TSTTK----IENI 527
              +  +P+   +R   D+F+L   Q                     T   K      N 
Sbjct: 473 ALTQPLEPSEPPLRDEGDLFSLTIDQLLPIRAYVLDPDSGLPRRDPKTGEEKIATVFANQ 532

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            G    +   L D I   +   L R +  L IRHVG   A  LA+ + S           
Sbjct: 533 QGEPKKNALALLDGIAAAKQAPLARILTGLSIRHVGPVAAVELARQFRSVDRI------- 585

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSS 645
              +      L     VG IIA ++ +++    +   +    +           E     
Sbjct: 586 ---DEASEAELAAADGVGSIIAASVKQWFAEDWHREILRKWREAGVRMEDEGAGEDEGPR 642

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +E   +V TGTL    R  A++ +  LGA V+  +S+KT  ++VG+NPGSK +KA QL 
Sbjct: 643 PLEGLTVVVTGTLASHTRDGAKDALQSLGAKVTGSVSKKTSFVVVGENPGSKYDKAMQLK 702

Query: 706 VKIMNEEQFLFLLQQYNTTLR 726
           V +++E  F  LL +     R
Sbjct: 703 VPVLDEAGFAVLLDEGPDAAR 723


>gi|332362528|gb|EGJ40328.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1056]
          Length = 652

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/702 (32%), Positives = 361/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   EERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q E
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQANSQEE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  LGF VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLADLGFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +P   PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEPLEIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CDSELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYTAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSIGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|297570387|ref|YP_003691731.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2]
 gi|296926302|gb|ADH87112.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2]
          Length = 680

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/719 (34%), Positives = 388/719 (53%), Gaps = 49/719 (6%)

Query: 6   LIP--IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           +IP  ++A + EQAR+ ++ L ++I YH+  YY    P I D+EYDAL R    +   +P
Sbjct: 1   MIPPLLQAAAKEQARQRVAELREQIRYHNHRYYVLDDPEIPDAEYDALFRELQELEERYP 60

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
            LA +   + P  ++G E       V H +P LSLE  +N  ++  F+ R+ RF     D
Sbjct: 61  GLAGA---DSPSRQVGAEPLAQFAPVAHRLPMLSLENAFNEGEISDFLLRLGRFL--HTD 115

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---N 180
                  EPK+DG  + + YE G F   + RGDG +GE+++A +  I TIPR L      
Sbjct: 116 QVPALHAEPKLDGLAVELVYEDGLFTLGSTRGDGFTGENITANLATIATIPRRLKTGGNP 175

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            P  +E+RGEV +S   F  LN      G   +ANPRNAA+G LR+L+P     R L FF
Sbjct: 176 PPARLEIRGEVCLSITGFKELNRRRGEAGESLFANPRNAAAGSLRQLDPAITADRPLEFF 235

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +G   ++ +    Q ++L+++   G  +    R        ++++  +   R  +PY+I
Sbjct: 236 AYGAADSAALAVTTQAQLLEQLHAFGLQLIPHGRVCPDLETALAHFRFLDEQRRQMPYEI 295

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++ +LQK+LG +ARSPRW ++ KFA  QA+T+L+ ++ Q+GRTG +TPVA LE
Sbjct: 296 DGMVLKVNDLALQKRLGAKARSPRWAVAAKFAAVQAATKLIGVEFQVGRTGAVTPVAVLE 355

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG L++ ATLHNED IK            +D+R+ D VLV+RAGEVIP+VV  + +
Sbjct: 356 PVKVGGVLVSRATLHNEDEIKR-----------KDLRLHDTVLVQRAGEVIPEVVKPVAD 404

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D +P   P+ CP C   ++R          A  RC     C AQ+L  L HF S+ 
Sbjct: 405 KRRGDEKPIQLPANCPECDHALIRKEGE------AVRRCPNP-QCPAQRLRSLIHFCSKA 457

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
             +I+GLGK+ ++   ++      +    DI+ L+  Q         + G+G+ S   + 
Sbjct: 458 GLDIDGLGKKAVELLVQT----GLVGDIPDIYRLRPEQLA------PLPGWGEKSAAKVC 507

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           D+I   ++  L R + +LGIRHVG   A+ LA+++ S +   Q +              +
Sbjct: 508 DAIAAAKSPKLARLLAALGIRHVGEVNAQVLARHFPSLEALQQAMEE----------DFL 557

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            V  +G  +A ++V F+++P     +  L +         +      ++N+  +FTG+L 
Sbjct: 558 EVEGIGSQVAASLVTFFKDPTTTAMLAQLKELGLTISPEEQPAQQLPLQNRVFLFTGSLA 617

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + R++A+  V +LG  V+  L+RK   ++ GD PGSKL KA++L ++I+ E  F  LL
Sbjct: 618 GMSRNEAKARVKELGGQVATGLNRKVTHLVCGDKPGSKLTKARELELEILTEADFARLL 676


>gi|84500836|ref|ZP_00999071.1| DNA ligase, NAD-dependent [Oceanicola batsensis HTCC2597]
 gi|84390903|gb|EAQ03321.1| DNA ligase, NAD-dependent [Oceanicola batsensis HTCC2597]
          Length = 626

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/635 (41%), Positives = 393/635 (61%), Gaps = 13/635 (2%)

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
              K+TH++  +SL   ++  D+ +F  RI  +     D  + +T EPKIDG  +++RYE
Sbjct: 2   GFGKITHAVRMMSLANAFDDADVAEFDARIRSYLNLAADAPLAYTAEPKIDGLSLSLRYE 61

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            G+ V AA RGDG  GE+V+A  R I  IP  ++   PE++EVRGEVY+S  DF ALN  
Sbjct: 62  NGRLVQAATRGDGEVGENVTANARTIDDIPVEVT-GAPEVMEVRGEVYMSHADFAALNAR 120

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
               G K +ANPRNAA+G LR+L+      R L FF +  G  S   A  Q + ++++R 
Sbjct: 121 QAERGGKTFANPRNAAAGSLRQLDAQITRARPLRFFAYSWGDLSAPLAATQTQAIERLRR 180

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           LGF  N   R+ +    ++ +Y  ++  R+TL YDIDG+VYKVD+ +LQ +LG R+ +PR
Sbjct: 181 LGFRTNPLTRRCDGPQDMLDHYRSIEEQRATLGYDIDGVVYKVDDLALQNRLGSRSTTPR 240

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W ++HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G D
Sbjct: 241 WALAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAGRD 300

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
           + G+ +RGG+DIR+GD V V RAG+VIPKV D+ +++R  DA+P+ FP+ CP C S  +R
Sbjct: 301 SRGEEIRGGKDIRIGDWVQVYRAGDVIPKVADVDLSKRPDDAEPYVFPTKCPECGSDALR 360

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           +         A  RCTGG+ C AQ +E+LKHFVSR AF+IEGLG +Q++ F+        
Sbjct: 361 EPG------DAVRRCTGGVVCPAQAVEKLKHFVSRAAFDIEGLGARQVEAFYTD----GW 410

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           I  PA+IFTL+ R       ++N  G+G+ S TNL+ +I+++R I L R +F+LGIRHVG
Sbjct: 411 ITEPAEIFTLEERYGRGLRALKNREGWGEKSATNLFRAIDEKRRIPLSRLLFALGIRHVG 470

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              +  +A +Y ++    + +    A        L  +  VG+++A ++   + NP    
Sbjct: 471 ESASALIANHYGTWDALEEAMVAA-AEPGQAREDLTGIDGVGEVMATSLTSAFANPAERA 529

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           +++ L+  +     R      S +  K +VFTGTL+K+ R +A+     LGA VS  +S 
Sbjct: 530 SMDRLVAHLDVQESRRAVAADSPVAGKTVVFTGTLEKMTRAEAKARAESLGAKVSGSVSA 589

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           KTD+++ G   GSK +KA +LGV+ M+E+ +L L+
Sbjct: 590 KTDLLVAGPGAGSKAKKAAELGVETMDEDGWLALI 624


>gi|332829049|gb|EGK01713.1| DNA ligase [Dysgonomonas gadei ATCC BAA-286]
          Length = 665

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/712 (30%), Positives = 365/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++++ +L +E++ H+  YY  S P I D E+D   +    +    P+     D N 
Sbjct: 1   MDHIKQQIEALREELNKHNHDYYVLSSPTISDFEFDKKLKELSELETLHPEYF---DANS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G ++N S  +V H  P LSL   +   ++  F  R+ +       +      E K
Sbjct: 58  PTQRVGSDINKSFRQVKHRYPMLSLGNTYTEAEVTDFYNRVQKGLN----DEFEIVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
            DGT I++ Y  G+   A  RGDG  G+DV+A +R I +IP  L  N  P   E+RGE+ 
Sbjct: 114 YDGTSISLTYVNGELTQAITRGDGVQGDDVTANVRTIRSIPLRLHGNDYPAEFEIRGEIL 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +  + F  LN E        +ANPRNA SG L++ +P  +  R L+ +++ +     +  
Sbjct: 174 MPWSVFEDLNKERAEQEEALFANPRNAGSGTLKQQDPKIVASRKLDSYLYYM-LGENLPT 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G YE L K +  GF +++  ++  T   I +Y +     R  LP   DG+V KV+  + 
Sbjct: 233 DGHYENLMKAKEWGFKISDATKKCKTLDEIFAYVHYWDIERKNLPVATDGIVLKVNSLTQ 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  ++ PRW I+ KF  ++A T L  +  Q+GRTG +TPVA L+ V + G  +  A
Sbjct: 293 QRNLGYTSKFPRWAIAFKFQAEKAVTTLESVSYQVGRTGAVTPVANLKAVKLSGTTVKRA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +L+NEDYI  L           D+ + D+V V++ GE+IPK+  +   +R    +   F 
Sbjct: 353 SLYNEDYINLL-----------DLHINDQVYVEKGGEIIPKITGVDTTKRGIFDEKVEFT 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +V+D         A + C   ++C  Q   R++HF++R A NI G G + +
Sbjct: 402 KNCPECGTPLVKDDGE------AIYYCPNDISCPPQIKGRIEHFLTRKAMNIAG-GSETV 454

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  +     A  I   AD++TL+ +  +   +      + + S  NL DSI+   ++   
Sbjct: 455 EHLYN----ARLIHNIADLYTLKWQDVSRLER------WAEKSARNLVDSIHASVSVPYA 504

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +++LGIR+VG  +A+ LA  + +       I+ ++A + ++    ++V  +GD IAQ+
Sbjct: 505 RVLYALGIRYVGETVAKKLALAFPN-------IDALMAASAEEL---VQVDEIGDRIAQS 554

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQE 668
           IV ++    N+  V  L +         E  VS    +++   +V +GT +K  R + + 
Sbjct: 555 IVRYFSEISNVEVVNKLREF-GIQFELSEDIVSQRTEKLKGLSIVISGTFEKHSRDEYKA 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            + Q G   S  +S KT+ I+ GDN G +KLEKA+ LGV +++EE FL +++
Sbjct: 614 MIEQNGGKNSGSISSKTNYILGGDNMGPAKLEKAESLGVPVISEEVFLEMIK 665


>gi|322389291|ref|ZP_08062851.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           903]
 gi|321144035|gb|EFX39453.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           903]
          Length = 652

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/702 (31%), Positives = 359/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ +   YY    P + DSEYD L R    +  A PD      P  P ++
Sbjct: 2   KTRMKELVELLNRYAYEYYTKDAPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+ +     +  SI +  E KIDG 
Sbjct: 59  VGGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRVRK-----EFPSISYVCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GED++  ++ +  IP VL    P  I VRGE Y+ +  
Sbjct: 114 SISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPE--PVNITVRGECYMPRAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N      G   +ANPRNAA+G LR+L+ T +  R L  F++   + S      Q  
Sbjct: 172 FDRVNQIRQENGEPEFANPRNAAAGTLRQLDTTIVAKRNLATFLY--QEVSPTDQSSQEG 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+K+ CLGF VN     A     I  +  ++  +R  LPYDIDG+V KV++ ++Q++LG
Sbjct: 230 VLEKLACLGFVVNQERVLAEDMEQIWDFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W +++KF  ++   ++L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DI   D V+V +AG++IP V+ ++ ++R  D Q  + P+ CP 
Sbjct: 350 DYI-----------AEKDIHQDDTVIVYKAGDIIPAVLRVVKDKRVSD-QALAIPTQCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CQSELLHFEDE------VALRCINPL-CPAQIKEGLNHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     +   A I+ L      +        GF + S   LY++I   +  S E+ +F 
Sbjct: 451 AQ----LVEDVAGIYRLTVEDLLTLE------GFKEKSAEKLYEAIQASKENSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG+++++ L + +      A      IA           +  +G ++A+++  ++
Sbjct: 501 LGIRHVGSKVSQILLQEFHDLDQLATADPERIA----------SIDSLGMVVAESLKRYF 550

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
               +   ++ L +         EK  +   +    +V TG L+++ R +A+  +  LGA
Sbjct: 551 AQEGSKRLLQELKEAGVNMAYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLESLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD+++ G + GSKL KAQ+LG+++ +E     L
Sbjct: 611 KVTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDEAWLESL 652


>gi|330752433|emb|CBL87383.1| DNA ligase [uncultured Flavobacteria bacterium]
          Length = 663

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/705 (30%), Positives = 362/705 (51%), Gaps = 49/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+ +  L  E+  H+  YY    P I D E+D   ++   +   +P+L    DPN P  +
Sbjct: 4   RELIFQLRNELRKHNHNYYVLDTPTISDFEFDIKLKKLQVLESQYPEL---SDPNSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +   V H+    SL+  ++  DL  + +R+ R      D  + +T E K DG 
Sbjct: 61  VGGAVTKNFQTVFHAQRMYSLDNSYSKSDLLDWESRVKRAV----DGPVSYTCELKYDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I+I Y+ G    A  RGDG+ G+DV+A ++ I ++P VL  + PE  E+RGE+ +    
Sbjct: 117 SISITYKNGCLFRALTRGDGNKGDDVTANVKTIKSLPLVLQGDFPESFEIRGEIILPFKG 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQYE 256
           F A+N + I+ G +P+ NPRN ASG L+  + +++ R  L   ++ + +      K QYE
Sbjct: 177 FKAMNKQRISQGEEPFKNPRNTASGSLKLQDSSEVARRPLECLLYSI-EGENTGIKYQYE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V    +  ++   ++ +       R  LPY+IDG+V KV++   Q +LG
Sbjct: 236 NLEKARMWGFKVPEEAQCVDSIEAVLKFIEHWDKARYDLPYEIDGIVVKVNDLQQQAELG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++PRW +++KF  +Q STRL  I  Q+GRTG +TPVA LE V + G ++  A+LHN 
Sbjct: 296 FTAKAPRWAMAYKFKAEQVSTRLNYISYQVGRTGAITPVANLEAVELAGTVVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+RVGD V V++ GE+IPK++ + +++R   A    + S CP 
Sbjct: 356 DQILKL-----------DVRVGDAVFVEKGGEIIPKIIGVDLSKRILGASKTKYISECPD 404

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C++ ++R          A H C   + C  Q + R++H++SR A +IEGLG + +     
Sbjct: 405 CKTPLIRKDGE------AQHYCPNTIGCPPQIIGRIQHYISRKALDIEGLGGETVAMLV- 457

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I+ PAD++TL+ +      ++         S  NL   +   + I  ER +F 
Sbjct: 458 ---AAGLIKDPADLYTLEIKDLLPLERMAQ------KSAENLIKGVQSSKQIPFERVLFG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LAK+Y +          + A +      L  V  +G  IA+++  F+
Sbjct: 509 LGIRYVGETVAKILAKHYKT----------VHALSEASVEDLEAVDEIGIKIAKSVYAFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +N  +I  +  L           E   +    +   ++V +G   ++ R++ +  +   G
Sbjct: 559 RNDVSIRLLSRLYSYGLQLSLSDEVLANQTTLLTGHRIVVSGVFDQVSRNELKRLIEANG 618

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             V + +S KT  +I G N G SK +KA+ LG+ ++ E+ FL  +
Sbjct: 619 GKVVSSISSKTSYLIAGSNVGPSKRQKAENLGITVLTEQAFLDKI 663


>gi|325129804|gb|EGC52612.1| DNA ligase, NAD-dependent [Neisseria meningitidis OX99.30304]
          Length = 841

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/842 (29%), Positives = 391/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  + AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 -----TLQRRQQTSTTKIENIL----------------GFGDVSVTNLYDSINKRRNISL 550
                TLQ+ ++T+   +                            N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + +   +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|325131881|gb|EGC54581.1| DNA ligase, NAD-dependent [Neisseria meningitidis M6190]
          Length = 841

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/842 (29%), Positives = 392/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF+ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMLKADFVALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             + F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +++GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDLDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 -----TLQRRQQTSTTKIENILGFGD----------------VSVTNLYDSINKRRNISL 550
                TLQ+ ++T+   +                            N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + +   +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|325127826|gb|EGC50734.1| DNA ligase, NAD-dependent [Neisseria meningitidis N1568]
          Length = 841

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/842 (29%), Positives = 391/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      ++ H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEIRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  + AA RGDG +GEDV+  ++ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             + F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 -----TLQRRQQTSTTKIENILGFGD----------------VSVTNLYDSINKRRNISL 550
                TLQ+ ++T+   +                            N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + +   +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|300858287|ref|YP_003783270.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685741|gb|ADK28663.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206007|gb|ADL10349.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
           C231]
 gi|302330560|gb|ADL20754.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
           1002]
 gi|308276242|gb|ADO26141.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
           I19]
          Length = 694

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/715 (30%), Positives = 352/715 (49%), Gaps = 50/715 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R++   L +++ YH D YY    P I D ++DAL R    +    P+LA    P+ P 
Sbjct: 23  ELRRQWDELAEQVRYHRDAYYN-DTPEISDQDFDALFRTLQKLEEEHPELAV---PDSPT 78

Query: 76  NKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
            ++G  +  + S   V H    +SL+ +++  +L +++ R           +  +  E K
Sbjct: 79  LEVGAPVALSSSFNNVEHLERLMSLDNVFDAAELSEWLQRT---------PAQAYLTELK 129

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRG 189
           IDG  + + Y  GK   AA RGDG  GEDV+   + I  +P  L  N    IPE++EVRG
Sbjct: 130 IDGLSLDLIYRDGKLWRAATRGDGRIGEDVTENAKVIADVPHRLKENAEFPIPELLEVRG 189

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EV+I+  DF A+N++    G KP+ANPRNAA+G LR+ +   +  R L    HGLG T  
Sbjct: 190 EVFIAVEDFAAVNEQRQLEGGKPFANPRNAAAGSLRQKDVEAVKKRRLRMICHGLGATQG 249

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                QY   + +   G PV+       +   +          R    +++DG+V KVD 
Sbjct: 250 FTPASQYHAYEALAAWGLPVSPYTELVQSAAEVQEKVLYWAEHRHDAAHEMDGVVVKVDS 309

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            S Q+ LG  AR+PRW I++K+  ++ +T LLDI + +GRTG +TP A + PV + G+ +
Sbjct: 310 ISEQRALGATARAPRWAIAYKYPPEEVTTELLDIQVGVGRTGRVTPFAVMRPVFVAGSTV 369

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+  +K            + + +GD V++++AGEVIP+V+  +V +R    + F
Sbjct: 370 SMATLHNQTEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGTEREF 418

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP C +R+         +  A  RC    +C AQ   RL +   R AF+IE LG+
Sbjct: 419 IFPTLCPSCGTRL-----APQKEDDADWRCPNSQSCPAQLSTRLTYLAGRGAFDIEALGE 473

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +  +   ++      +   A +F L       T          + + + L  ++ + +  
Sbjct: 474 KAAEDLIRT----GVLIDEAGLFELTEEDLLKTRVYTTKKKTLNATGSKLLANLEQSKKA 529

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R + +L IRHVG   AR+LA  Y S     +     IA              VG II
Sbjct: 530 DLWRVLVALSIRHVGPTAARALASRYHSMDALREASAEEIADT----------EGVGAII 579

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           AQ+  ++++   +   VE   +          +     +    +V TG+L+   R  A+E
Sbjct: 580 AQSFKDWFEVDWHAHIVEQWARAGVTMAEETSQLPEQTLAGMTVVVTGSLEGFSRDSAKE 639

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +   G   S  +S+KTD ++VG+N GSK  KA++LG+ I++E  F+ LL+  + 
Sbjct: 640 AIISRGGKASTSVSKKTDYVVVGENAGSKETKARELGLTILDESGFIRLLENGSV 694


>gi|218767787|ref|YP_002342299.1| putative DNA ligase [Neisseria meningitidis Z2491]
 gi|166216217|sp|A1IQR7|DNLJ_NEIMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121051795|emb|CAM08101.1| putative DNA ligase [Neisseria meningitidis Z2491]
 gi|319410038|emb|CBY90372.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria
           meningitidis WUE 2594]
          Length = 841

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/838 (30%), Positives = 390/838 (46%), Gaps = 159/838 (18%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               F A+   + L   + LGF + N           ++++Y +M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLTFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF-KSEDPAFSIRIPADI 510
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++    +     F+     DI
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVLHFADLYRLDI 542

Query: 511 FTLQRRQQTSTTKIENILGFGD----------------VSVTNLYDSINKRRNISLERFI 554
            TLQ+ ++T+   +                            N+   I   +   L RF+
Sbjct: 543 PTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIESGKTPELARFL 602

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------------- 583
           F+LGIRHVG   A++LA+ + + +   +                                
Sbjct: 603 FALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM 662

Query: 584 INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE------------ 614
           I+ ++A         + +P                  + +  AQA+ E            
Sbjct: 663 IDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQND 722

Query: 615 ---------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQK 660
                    +   P+N   +E L    +      E    S      +  K  V TGTL  
Sbjct: 723 KALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPT 782

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV I++E + L LL
Sbjct: 783 LKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840


>gi|103486042|ref|YP_615603.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256]
 gi|123078573|sp|Q1GVQ2|DNLJ_SPHAL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|98976119|gb|ABF52270.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256]
          Length = 714

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/733 (37%), Positives = 411/733 (56%), Gaps = 57/733 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +  + +L+  +A  EL  L ++I++H+  Y+    P I D++YDAL RR  AI  AFP L
Sbjct: 1   MKDVGSLTEAEAANELMRLAKQIAHHNKLYHAEDSPEISDADYDALVRRNTAIEEAFPHL 60

Query: 66  ARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
            R++ PN     +G  +  S L KVTH+   +SL+  +  ED+ +F  R+ RF    +  
Sbjct: 61  IRADSPN---RLVGAAVEASPLAKVTHAQRMMSLDNAFAAEDVEEFAARVRRFLNLDEGE 117

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + FT E KIDG   ++RYEKG  V AA RGDG  GEDV+  +R I  IP+ L  +IP+I
Sbjct: 118 PLAFTAEDKIDGLSCSLRYEKGVLVQAATRGDGTVGEDVTPNVRTIADIPQNLKGDIPDI 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNF 238
            E+RGEVY++K DF ALN  ++A    P     +ANPRNAA+G LR+ + +   +R L F
Sbjct: 178 FEIRGEVYMAKADFAALNARLLAEADDPDKARQFANPRNAAAGSLRQKDASVTASRPLRF 237

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             HG G+ S + A  QY +++ +   G PV+  +++ +    ++ +Y  +++ R+ LPYD
Sbjct: 238 LAHGWGEVSALPADTQYAVMKAIESWGVPVSPLLKRCDGVADLLDHYRMIEAERAELPYD 297

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q +LG  AR+PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL
Sbjct: 298 IDGVVYKVDRLDWQARLGFVARAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRL 357

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG +++N TLHN D I  L            +R GDR++V+RAG+VIP+VV+ + 
Sbjct: 358 TPVTVGGVVVSNVTLHNRDEIARL-----------GVRPGDRIIVQRAGDVIPQVVENLT 406

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R    +P+ FP  CP+C S  V +            RCTGGL C+AQ+ ERL+HFVSR
Sbjct: 407 --RDEPREPYVFPDHCPVCGSEAVAEDGE------VDVRCTGGLICNAQKFERLRHFVSR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG++ +  F +     +  + PADIF L+  ++    +     G+ + SV NL
Sbjct: 459 GALDIEGLGEKSIAEFLEL---GWLEKGPADIFRLKSHREELLAR----EGWKERSVDNL 511

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND----- 593
             +I  +R     R +F LGIRHVGA  AR L K          +   + A         
Sbjct: 512 LAAIEAKRQPDAARLLFGLGIRHVGAVTARDLLKGIGDIARLPGKAAELRAWVEANPRIE 571

Query: 594 ---------------DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
                            +  +R   +G  +A+A+ +F+  P N    + LL EVSP    
Sbjct: 572 GESEGKYAARRLEAIKAILDVRADGIGPAVAEALGDFFHEPHNRVLWDDLLSEVSPPPYV 631

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E    SE+  K +VFTG L+ + R +A+     LGA  +  +S KTD+++ G   GSKL
Sbjct: 632 VETR-DSEVSGKTVVFTGKLETMSRDEAKAQAEALGAKAAGSVSAKTDLVVAGPGAGSKL 690

Query: 699 EKAQQLGVKIMNE 711
           ++A  LG+++++E
Sbjct: 691 KQAASLGIRVIDE 703


>gi|254776288|ref|ZP_05217804.1| NAD-dependent DNA ligase LigA [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 681

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/711 (30%), Positives = 344/711 (48%), Gaps = 43/711 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++   L + +  H   YY    PII D+E+DAL     A+    P+L  +   + P   
Sbjct: 2   RRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPELRVA---DSPTQL 58

Query: 78  IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +GG        +  H    LSL+ +++ ++L  +  R+     K       +  E KIDG
Sbjct: 59  VGGAGFATDFAEAAHLERMLSLDDVFDTDELIAWSNRVENEIGKDPH----YLCELKIDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVY 192
             +++ Y  G+   AA RGDG  GEDV+   R I  +P  LS      +P ++EVRGEV+
Sbjct: 115 VALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSPSDDFPVPALLEVRGEVF 174

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251
               DF ALN  ++  G+ P+ANPRN+A+G LR+ NP    R  L    HG+G+T     
Sbjct: 175 FLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTEGFSP 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K Q+E    +   G PV     +      +          R  L ++IDG+V KVD+ +L
Sbjct: 235 KTQHEAYTALSVWGLPVAEQTARVRGLAAVQERIGYWGEHRYELQHEIDGVVVKVDDVAL 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  A
Sbjct: 295 QRRLGATSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVGLA 354

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+V+  +V+ R    + F  P
Sbjct: 355 TLHNAAEVKR-----------KGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGTEREFVMP 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +  A  RC    +C AQ  ER+ H   R A +IEGLG +  
Sbjct: 404 TTCPECGTPL-----APAKEGDADIRCPNARSCPAQLRERVFHVAGRGALDIEGLGYEAA 458

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                    A  I    D+F L       T       G    + T L  ++ K + ++L 
Sbjct: 459 TALL----TAGVIADEGDLFALTEDDLLRTELFRTKAGTLSANGTRLLQNLQKAKKVALW 514

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   AR+LA  +    +        +A           V  VG  IA A
Sbjct: 515 RVLVALSIRHVGPTAARALATEFGDLDSIMSASTERLAA----------VEGVGPTIAAA 564

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + E++    +   V+             + +V   +E   +V TG+L    R  A+E + 
Sbjct: 565 LTEWFTVDWHRAIVDKWRAAGVRMADERDASVPRTLEGLTVVVTGSLAGFSRDDAKEAIL 624

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             G   +  +S+KTD ++ GD+PGSK +KA +LGV I++E+ F  LL +  
Sbjct: 625 ARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPILDEDGFRKLLAEGP 675


>gi|325133819|gb|EGC56475.1| DNA ligase, NAD-dependent [Neisseria meningitidis M13399]
          Length = 841

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/842 (30%), Positives = 388/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+      P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPEFKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF+ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFVALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             + F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQ-----------------RRQQTSTTKIENILGFGDV----SVTNLYDSINKRRNISL 550
            L                    Q  S        G           N+   I   +   L
Sbjct: 539 RLDIPTLQKMKEAADKTVAESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + ++  +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKSIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV I++E + L 
Sbjct: 779 TLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|238020272|ref|ZP_04600698.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147]
 gi|237868666|gb|EEP69670.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147]
          Length = 797

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/807 (31%), Positives = 394/807 (48%), Gaps = 132/807 (16%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            +QA++++ +L  +++ +   YY    P + DSEYD L R  +A+   +P       P  
Sbjct: 20  PQQAQQKIQTLTAQLNQYAHEYYTLDAPTVPDSEYDRLYRELEALETEYPQFRL---PES 76

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKKDD 123
           P N++GG +      V H++P LSL   ++            ++R F  R+ +       
Sbjct: 77  PTNRVGGAVLDGFETVIHAVPMLSLANAFSPRDDEAGTFDHAEMRAFDERVCKDLGAAHT 136

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IP 182
               + +EPK DG  I++ Y+ G  + AA RGDG +GEDV+  I+ +  IP  L  + +P
Sbjct: 137 ---EYIIEPKFDGLAISLLYQNGILIQAATRGDGTTGEDVTENIKTVRNIPLRLHGDEVP 193

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
           ++IEVRGEV + K DF ALN   +  G+KP+ANPRNAA+G LR+LN      R L+FF +
Sbjct: 194 DLIEVRGEVLMLKADFAALNARQLDAGQKPFANPRNAAAGSLRQLNSAITAQRKLHFFGY 253

Query: 242 GLGKTSEIF--AKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           G+ + S  F   +   + ++ +  LGF      +R       ++ +Y  M   R  LPY+
Sbjct: 254 GIARLSTAFRQPENHAQEIELLARLGFSEPQAQIRVCANIQEVLDFYETMAQQRPQLPYE 313

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV++   Q+QLG  +R+PRW I+HKF  ++A T +  ID+Q+GRTG +TPVARL
Sbjct: 314 IDGMVVKVNDLRQQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGSITPVARL 373

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +++
Sbjct: 374 KPVFVGGVTVTNATLHNQDEVAR-----------KDVRVGDTVVVRRAGDVIPEVVRVVL 422

Query: 419 NERH------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466
             R             P    F  P  CP+C S V R++        A  RCTGG+ C A
Sbjct: 423 ERRPMRNVDLLGERQEPQHPAFRLPETCPVCGSAVEREIGE------AVARCTGGIVCKA 476

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526
           Q+ + L HF SR A +I GLG +Q++   + +     +   ADI+ L   +  +    ++
Sbjct: 477 QRAQGLIHFASRKAMDIVGLGDKQIEALVEQD----VLHSFADIYQLDIAKLQTIKDSKS 532

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK-------------- 572
                +    N+ D++   R   L RF+F+LGIRHVG   A+ LA               
Sbjct: 533 GA---NKWTHNILDAVAASRQPPLARFLFALGIRHVGESTAKQLAAAFGDWDTVRRAPEP 589

Query: 573 ---------------------------------YYLSYQNFAQEINNIIAHNNDDWLSLI 599
                                            +++S Q  A     +       WL+ +
Sbjct: 590 VLACLPDIGSVVAHSIAHFFRLPEQQKLLDDLLHFVSPQEAAIATLVLEYATPARWLARL 649

Query: 600 RVPLVGDIIAQAIVE---------------------FYQNPRNICAVE-------ALLKE 631
               + +  AQ + +                     + + P N   +         L + 
Sbjct: 650 PDYKISEKRAQELWDLAGGSIAQLLADDALPSDWQAWRRQPENARLLRDIDAFFAQLPEH 709

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
             P+      ++ +EI  K  V TGTL  ++R +A   +   G  VS  +S+KTD ++ G
Sbjct: 710 ALPADNAVSGSLKNEITGKIFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFVVAG 769

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              GSKLEKAQ LG+ +++EE+ L +L
Sbjct: 770 AEAGSKLEKAQSLGITVLSEEELLGML 796


>gi|116074145|ref|ZP_01471407.1| DNA ligase [Synechococcus sp. RS9916]
 gi|116069450|gb|EAU75202.1| DNA ligase [Synechococcus sp. RS9916]
          Length = 691

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/730 (30%), Positives = 347/730 (47%), Gaps = 56/730 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++   A +    L   ++     YY    P++ D  YD L R    +  A P L      
Sbjct: 1   MTAASA-QRAQELRGLLNTAAHAYYVLDAPVMEDPVYDRLYRELLELESADPSLVTV--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SI 126
           + P  ++GG        V H I  LSL+  +N E+L  +  R+ R   ++        ++
Sbjct: 57  DSPTQRVGGTPAEGFSSVRHRIGLLSLDNAFNAEELGAWYGRLLRVLDREPSEGQPRPAL 116

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEII 185
               E KIDG  + + YE G  V AA RGDG  GED++A +R I ++P  L L+  P  +
Sbjct: 117 AMVGELKIDGNALALSYENGVLVRAATRGDGEQGEDITANVRTIGSVPLRLQLDQPPAWL 176

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGE +I    F  +N +    G   +ANPRNA +G LR+L+P  +  R L+FF + L 
Sbjct: 177 EVRGEAFIPDGVFDGINADRQQRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLH 236

Query: 245 KTSEIF---AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
              +        Q++ LQ +R  GF VN           + +++N     R  L Y  DG
Sbjct: 237 LPDDWQGQRPTSQWDSLQWLRDAGFKVNPNAELLPDLDAVEAFFNSWDGGRRQLDYATDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K+D   LQ   G   ++PRW I+ K+  ++A ++LL +  Q+GRTG++TPVA  E V
Sbjct: 297 VVVKLDNLRLQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLTCQVGRTGVITPVAEFEAV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  ++ ATLHN D +  L           D+  GD ++V++AGE+IP+VV ++   R
Sbjct: 357 PLAGTSVSRATLHNADRLDEL-----------DLHAGDTIVVRKAGEIIPEVVRVLKELR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              A+    P  CP C S +VR+         AA RC    +C A     L+H+VS+ A 
Sbjct: 406 PTSAERLQLPHTCPECGSTLVREAGE------AATRCINS-SCPAILRGALRHWVSKGAL 458

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +++GLG + ++           ++  AD++ L     +S  ++         S  NL  +
Sbjct: 459 DVDGLGSKLIEQLVDR----GLVQSIADLYRLDAALLSSLERMGQ------KSAENLVSA 508

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   R     R ++ LGI HVG   A++LA  +           N          S+  V
Sbjct: 509 LAASRQQGWARQLYGLGIHHVGEVNAKALAATFPDADLLQTAACNA-------PESITAV 561

Query: 602 PLVGDIIAQAIVEFYQNPRNICAV-----EALLKEVSPSIGRHEKNVSSE--IENKKLVF 654
             +GD IAQ++ +++ NP N+  +     +     +S    R  +  SSE  +     V 
Sbjct: 562 FGIGDEIAQSLQQWFANPSNLQLLNGLREQGFSLALSADEQRRAEAASSERHLSGSTFVL 621

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL  + R +A+E +   G  VS  +S+KT  ++ GD  GSKL KA+ LG+ I++E   
Sbjct: 622 TGTLPTLSRSQAKELIEAAGGKVSGSVSKKTSYVVAGDEAGSKLTKAESLGLTILDETGL 681

Query: 715 LFLLQQYNTT 724
             LL    + 
Sbjct: 682 QALLGSPQSA 691


>gi|317153517|ref|YP_004121565.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2]
 gi|316943768|gb|ADU62819.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2]
          Length = 678

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/721 (32%), Positives = 378/721 (52%), Gaps = 59/721 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +     + L + I +H+  YY    P I D+EYDAL R   A+  A P+L   +D 
Sbjct: 1   MASSEIIDRAAWLRERIEHHNHRYYVLDDPEISDAEYDALFRELAALEAAHPEL---DDA 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GGE  +      H++   SL+    +++   F  R+ +   +     + +  +
Sbjct: 58  NSPTRRVGGEPAVGFTPYEHALRMYSLDNAMALDEWFAFAERVSKGLGRS---EVAYWTD 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  + + YE G+ V AA RGDGH GEDV+  +R +  +P VL   ++P+++EVRGE
Sbjct: 115 PKMDGLAVEVIYEAGRLVRAATRGDGHIGEDVTHSMRTVMNLPLVLRGPDVPDLLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           V +S  DF A+N      G K +ANPRN A+G +R+L+P     R L F  +G+G+    
Sbjct: 175 VVMSNADFAAMNQRRREAGEKVFANPRNGAAGAVRQLDPKVAASRPLRFLAYGVGRVQWG 234

Query: 250 FA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q+E++  +  LGF V    +   +   +  Y+  +  +R+ LPY+IDG+V K
Sbjct: 235 SPLFAWTSQHEIMAGLARLGFAVPPEAKLCGSASEVADYFTRLMELRAGLPYEIDGVVAK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   +Q+ LG  +R+PRW ++ KF   QA T L DI IQ+GRTG+LTPVA LEPV + G
Sbjct: 295 VDNLEMQRALGFTSRAPRWALALKFPAHQARTMLRDIRIQVGRTGVLTPVAELEPVPLAG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHN+ YI             RD R+GD VL++RAG+VIP+V+ + V +R   A
Sbjct: 355 VIVSNATLHNKGYI-----------AERDFRIGDTVLIQRAGDVIPQVLSVDVGQRPESA 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP+ CP+C             +   A RCT    C A+ ++R+ HFVS+   ++EG
Sbjct: 404 TPYEFPAICPVCGGEA--------REDGEAVRCTNP-TCPAKTVQRIIHFVSKAGLDMEG 454

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G+  +    +       +  PAD+FTL +             G GD S     ++I++ 
Sbjct: 455 VGRTWVRRLAED----GVLETPADLFTLDKTALLRYE------GMGDKSADKFIEAIDRA 504

Query: 546 RNI-SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           R    L R I  LGIRHVG + AR+LA  Y      AQ           D   L+ +  V
Sbjct: 505 RRTAPLWRLIAGLGIRHVGEQTARTLAARYRDLDALAQA----------DRDELLALDDV 554

Query: 605 GDIIAQAIVEFYQNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           G ++A+++  F+++      ++              +    +   ++ +  K  +FTG+L
Sbjct: 555 GPVVAESVHFFFRSEETRSLLQRFREADFWPLGGQTAANVADAAGNAPLAGKVFIFTGSL 614

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A+  V + G      +S+K D ++ GD  GSK+ KA++LG+ +++ + F+ LL
Sbjct: 615 PGMTRDQAKLLVEERGGAAVPSISKKVDYVVAGDKAGSKIAKAEKLGLTVIDFDGFMELL 674

Query: 719 Q 719
           Q
Sbjct: 675 Q 675


>gi|325143946|gb|EGC66256.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240013]
 gi|325206489|gb|ADZ01942.1| DNA ligase, NAD-dependent [Neisseria meningitidis M04-240196]
          Length = 841

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/842 (30%), Positives = 393/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+      P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPEFKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               F A+   + L   + LGF + N           ++++Y +M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 -----TLQRRQQTSTTKIENIL------------GFGDV----SVTNLYDSINKRRNISL 550
                TLQ+ ++T+   +                G           N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETTDKTVAESDQTPSEGSSVGASGKHKKQPVKWAENILGGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + +   +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV I++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|307326508|ref|ZP_07605703.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113]
 gi|306887916|gb|EFN18907.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113]
          Length = 732

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/743 (29%), Positives = 356/743 (47%), Gaps = 62/743 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + R+  + L ++I  H   YY    P++ D+E+D L R  +A+    P L     P+ 
Sbjct: 10  PAEVRERHARLAEQIEEHRFRYYVKDAPVVSDAEFDKLMRELEALEEETPAL---RTPDS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G       +V H    LSL+  ++ E+L  +  RI +        +  F  E K
Sbjct: 67  PTQKVAGAYETDFTEVEHRERMLSLDNAFDDEELSTWADRIAKELGS---GAYHFLCELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L+ + +P ++EVRGEV+
Sbjct: 124 VDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLTGDRVPALVEVRGEVF 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           +++  F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L+  VHG+G       
Sbjct: 184 LARERFEELNAGLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGARDGFDI 243

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK--SIRSTLPYDIDGLVYKVDEF 309
               +  + +   G P     +  +T   +  Y         R ++ ++IDG V K+DE 
Sbjct: 244 DRLSQAYELLHEWGLPTAAHFKVVDTIEAVREYIAYYGDSEHRHSVEHEIDGAVVKLDEI 303

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  +R+PRW I+ KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + 
Sbjct: 304 PLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGSEVE 363

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    + F 
Sbjct: 364 FATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFV 412

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C AQ  ER+ +   R + +IE LG  
Sbjct: 413 MPATCPECDTPL-----QPAKEGDVDLRCPNSRSCPAQLRERIFYLAGRKSLDIENLGYV 467

Query: 490 QLDFFFKSEDPAF-SIRIPADIFTLQRRQQT-----------STTK-------------I 524
                 +  +P    ++   D+F L+  Q                K              
Sbjct: 468 AAAALTQPLEPTEPPVKDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEAKVVTFF 527

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
               G    +   +  +I   +   L R I  L IRHVG   A +LA+ + S    A+  
Sbjct: 528 ATQKGEAKKNALAMLANIEAAKERPLARIITGLSIRHVGPVAATALAREFRSLDRIAEAD 587

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNV 643
              +A              VG  IA ++ E++    +   +E   +  V       E   
Sbjct: 588 EEELAAVE----------GVGSTIAASVKEWFAVDWHREILEKWRRAGVRLEEEGGEDEG 637

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E+  +V TGTLQ   R  A+E +   GA V+  +S+KTD ++VGDNPGSK +KA Q
Sbjct: 638 PRPLESLTVVVTGTLQSYTRDGAKEALQSRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQ 697

Query: 704 LGVKIMNEEQFLFLLQQYNTTLR 726
           + V +++E+ F  LL+Q     R
Sbjct: 698 VKVPVLDEDGFGVLLEQGPDAAR 720


>gi|11967289|gb|AAG42042.1| NAD-dependent DNA ligase [Aquifex pyrophilus]
          Length = 719

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/720 (33%), Positives = 384/720 (53%), Gaps = 51/720 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ LS+E+A++    L++ I +HD  YY  + P+I D +YD L R    I   FP     
Sbjct: 24  LKDLSLEEAKRLAEELKEVIRFHDYKYYVQASPVISDYDYDRLFRALKEIERKFPQFI-- 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  ++  E+      V H  P LSL+  +  E+L+++  R+           + +
Sbjct: 82  -TPDSPTQRVASEITGEFPTVKHYAPMLSLDNAYTEEELKEWDRRVRELTG---FEVVEY 137

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IE 186
           T+EPK+DG  I + Y+   FV  A RGDG  GED++  ++ I TIP     +   I   E
Sbjct: 138 TVEPKLDGAGIALVYKDDIFVRGATRGDGEYGEDITNNLKTIKTIPLKAEFSRFGIKLAE 197

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-- 243
           +RGEV I+K +F  LN E I  G  P+ANPRNAA+G +R+ +P ++  R L   V+ L  
Sbjct: 198 IRGEVVINKEEFKKLNQERIEEGLPPFANPRNAAAGSIRQKDPKEVAKRRLEAVVYQLSY 257

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            +  E   K  YE L+ +  LGF       +       ++ Y  E +  R T PY+IDG+
Sbjct: 258 VEPPERDPKTHYESLKMLDTLGFKTLFKDTKLCRGIDEVIEYCKEWEEKRDTYPYEIDGM 317

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV++  L ++LG  +  PRW I++KF  ++A T+L+D+  Q+GRTG +TPV +LEPV 
Sbjct: 318 VVKVNDRRLYEKLGYTSHHPRWAIAYKFKPRRAVTQLVDVVFQVGRTGAITPVGKLEPVQ 377

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG  +++ +L NED+I+            +DIR+GD VLV+RAG+VIP + D++  +R 
Sbjct: 378 VGGVTVSSVSLFNEDFIR-----------EKDIRIGDYVLVERAGDVIPYIADVLKEKRS 426

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            + +   FP  CP C S +V+  +        A RC   + C AQ + R+KH+ SR+A +
Sbjct: 427 GEEREIVFPERCPSCGSELVKLPDE------VARRCIN-IGCPAQSVLRVKHWASREAMD 479

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I GLG   +   F        +R                  +  + GFG+ S  NL  +I
Sbjct: 480 IRGLGDATVKLLFNR----GLVRDVG------DLYYLKLLDLLRLPGFGERSALNLLRAI 529

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + +N  ++R ++ LGIR+VG+  A+ +++           IN+I    +     ++R+ 
Sbjct: 530 EESKNRPIDRVLYGLGIRYVGSTTAKKISEI----------INSIWELKDIPIERIMRLE 579

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG  +A++I EF+  P N+  +E L K       +  + ++  ++ K  VFTGTL+   
Sbjct: 580 GVGYKVAKSIKEFFSVPENLKVLEKLEKAGVNLEKKKTEKIADVLKGKTFVFTGTLECCS 639

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQY 721
           R KA E V  LG   S  ++ +TD ++VG  PG  KLEKA++ GVK + EE+F+ +++ Y
Sbjct: 640 REKAGEIVESLGGKFSNSVTSRTDYLVVGKEPGRTKLEKAKKYGVKTITEEEFINMIKDY 699


>gi|58038653|ref|YP_190617.1| NAD-dependent DNA ligase [Gluconobacter oxydans 621H]
 gi|81352629|sp|Q5FUI5|DNLJ_GLUOX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|58001067|gb|AAW59961.1| NAD-dependent DNA ligase [Gluconobacter oxydans 621H]
          Length = 683

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/704 (38%), Positives = 417/704 (59%), Gaps = 34/704 (4%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A +  ++LE +++  D+ Y+   +P + D+ YDA +R   A+  A+PDL   E   G   
Sbjct: 8   AAERHAALEADLAQWDEAYHGRDEPEVSDAVYDAARRELLALEEAYPDLRSQE---GASQ 64

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPKI 134
           ++G   + +  K  H +P LSL+ +++ E    F++R+ RF    +D   ++ F  EPKI
Sbjct: 65  RVGATPDSAFGKYRHLVPMLSLDNVFDPEGFDGFVSRVGRFLGLDEDGLQALQFVAEPKI 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++ YE G FV    RGDG  GEDV+A +  +  IPR L    PE +E+RGEV++S
Sbjct: 125 DGLSISLTYEHGHFVRGTTRGDGIEGEDVTANLLTLKDIPRELPGEAPERVEIRGEVFLS 184

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
           K+ FL LN++ +A G KP+ANPRNAA+G LR+L+     +R L+ F +  G TS   A  
Sbjct: 185 KSSFLTLNEQQVARGAKPFANPRNAAAGSLRQLDAEITRSRPLSLFAYAQGYTSSPVATT 244

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ L+K+R  GF VN   +       I +Y  ++   RS L YDIDG+V+K+D+ SLQ 
Sbjct: 245 HWDYLEKLRSWGFTVNPLSQMIAHARDIPAYVEKLARERSELDYDIDGIVFKLDDLSLQD 304

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG   R+PRW I+ KF  +QA TRL +I+IQ+GRTG LTPVA LEPVN+GG +++ ATL
Sbjct: 305 RLGFAGRAPRWAIAWKFPAEQAITRLREIEIQVGRTGALTPVAHLEPVNVGGVIVSRATL 364

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED I             +D+RVGD V ++RAG+VIP+++  + +E  P ++PF +P  
Sbjct: 365 HNEDEIAR-----------KDVRVGDLVRLQRAGDVIPQILGPVPSE-EPRSEPFVYPDH 412

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S   R          A  RCTGGL C AQ +ERL H VSR+AF+I+GLG++ +  
Sbjct: 413 CPVCGSLAERVHGE------AVRRCTGGLTCEAQIVERLIHMVSRNAFDIDGLGERSIRE 466

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F+     A  IR P DIF L++ ++    +     G+G +SV NL+ +I  RR I L R 
Sbjct: 467 FYD----AGYIRRPGDIFRLRQHEEALLQR----DGWGRLSVDNLFRAIEDRRTIPLSRL 518

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF LGIR +G   A+ LA++Y +++N+   +      ++++  SL  +  VGD IA  + 
Sbjct: 519 IFGLGIRRIGERNAQLLARHYQTFENWRTAMLAARP-DSEERASLGAIMGVGDAIADELS 577

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F+    NI  ++ L  E+   I   E      +  K +VFTGTL  + R +A+    +L
Sbjct: 578 AFFSESHNIETLDDLALEL-KDIIAEEAPSEGHLSGKVIVFTGTLTTMSRPEAKAIAERL 636

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           GA V+  +S+KT ++++G+  GSK +KA +LG++ ++E  +  L
Sbjct: 637 GAQVTDSVSKKTSLVVLGEKAGSKAKKAAELGIETVDESGWRVL 680


>gi|261392961|emb|CAX50546.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria
           meningitidis 8013]
          Length = 841

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/842 (29%), Positives = 388/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+      P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDRLFRELEALELNHPEFKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               F A+   + L   + LGF + N           ++++Y +M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQ-----------------RRQQTSTTKIENILGFGDV----SVTNLYDSINKRRNISL 550
            L                    Q  S        G           N+   I   +   L
Sbjct: 539 RLDIPTLQKMKEAADKTVAESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + ++  +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIENKKLVFTG 656
                        +   P+N   +E L    +      E       ++  +  K  V TG
Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|332638905|ref|ZP_08417768.1| NAD-dependent DNA ligase [Weissella cibaria KACC 11862]
          Length = 678

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/720 (31%), Positives = 374/720 (51%), Gaps = 52/720 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            I  +++ +A+ E+ +L+Q++      YY+   P + D+ YD    R +A+  A+P+L  
Sbjct: 6   DIATMTVIEAKAEIDALQQDLKQWAQEYYENDAPSVEDAVYDREYNRLEALEAAYPELV- 64

Query: 68  SEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+    ++GG+     L KV H IP LSL  ++++++L  ++    + +       +
Sbjct: 65  --TPDSITQQVGGKATKSDLPKVVHDIPMLSLGDVFSLDELYDWLATTQKSFNT----PL 118

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +  E KIDG  I++ YE G+ + A+ RGDG+ GEDV+A +R I  IP+ L  N P  +E
Sbjct: 119 SYNAELKIDGLAISLVYENGELIQASTRGDGNIGEDVTANVRQIKRIPKQL--NEPISVE 176

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEVY+ K  F+ LN++    G   +ANPRNAA+G LR+L+      R L+ F++    
Sbjct: 177 VRGEVYMPKAAFVTLNEQRERDGLSTFANPRNAAAGSLRQLDVKVTKQRQLDAFLYAAVD 236

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
               +    Q ++LQ++  LG P N       +   I +Y N+  + R  L Y IDG+V 
Sbjct: 237 AENTLGVTTQADLLQRLAELGLPANPTNAVVASEADIAAYINDETATRDELAYGIDGIVI 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  +  ++LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV + 
Sbjct: 297 KVNSLAYHEELGNTVKVPRWAIAYKFPPEEAHTVVRDIEWTVGRTGAVTPTAVMDPVQLA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  A+LHN DY+             +DIR+GD V + +AG++IP++  +I+++R  D
Sbjct: 357 GTTVARASLHNPDYLNS-----------KDIRIGDTVTLHKAGDIIPEIGQVILSQRPTD 405

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           ++ +  P  CP C   +V            A RC     C AQ  E L HF SRDA NI+
Sbjct: 406 SEVYQMPLGCPACGQELVHIDGE------VALRCINPF-CPAQVQESLTHFASRDAMNID 458

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + +            I   +D++ L   Q  +  K      FG+ S  NL  +I  
Sbjct: 459 GLGPKIVGQLLSRNM----ISQVSDLYRLTFEQLLTLDK------FGETSANNLLRAIEN 508

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  S+ER +F LGIR+VGA+ A+++A  +++    A    + IA           +P +
Sbjct: 509 SKQNSVERLLFGLGIRNVGAKAAKTIAAKFVTLDAIAHASADDIA----------ELPGM 558

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           G II  +I +++        V    +    +      E    +   +KK+V TG L    
Sbjct: 559 GLIIGHSIAQYFDTEHAQELVADFEQLGVNTRYTQAVEIATDTVFSDKKVVLTGKLALFS 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A  ++   GA VS  +S+KTD++I G + GSKL KAQ+LG++I +E Q    +   N
Sbjct: 619 RSEATAWLESQGATVSGSVSKKTDLLIAGADAGSKLTKAQELGIEIWSEAQLRDSMDNNN 678


>gi|308388851|gb|ADO31171.1| DNA ligase [Neisseria meningitidis alpha710]
 gi|325202538|gb|ADY97992.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240149]
 gi|325207712|gb|ADZ03164.1| DNA ligase, NAD-dependent [Neisseria meningitidis NZ-05/33]
          Length = 841

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/842 (30%), Positives = 393/842 (46%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               F A+   + L   + LGF + N           ++++Y +M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 -----TLQRRQQTSTTKIENIL------------GFGDV----SVTNLYDSINKRRNISL 550
                TLQ+ ++T+   +                G           N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETTDKTVAESDQTPSEGSSVGASGKHKKQPVKWAENILGGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + +   +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|323342976|ref|ZP_08083207.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463040|gb|EFY08235.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 659

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/700 (36%), Positives = 388/700 (55%), Gaps = 48/700 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L +++  ++  Y+   +P I D EYD L R  + +    P+     D N P  K
Sbjct: 3   KERILALRKKLHQYNYEYHVMDQPTIADVEYDQLLRELNELEVKHPEFF---DINSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG ++    KVTH  P  SL   ++  DL  F  R+   +      ++ + +E KIDG 
Sbjct: 60  VGGVVSERFSKVTHRFPMFSLGNAFSRSDLEVFDERLRAQFP-----NVSYVVELKIDGL 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++I YE G F+ A  RGDG  GEDV+  IR I +IP  L LNI E + VRGEV++    
Sbjct: 115 AMSIDYEDGLFIQAVTRGDGTVGEDVTQNIRVIDSIP--LKLNIDEDVTVRGEVFMPVKS 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+         +AN RNAA+G +R+L+   +  R L+ F + L    E+    QY+
Sbjct: 173 FTRVNESRKENNEALFANCRNAAAGTIRQLDSKVVATRGLDGFWYTLVNAKELGITSQYD 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  ++ +GF VN  ++  NT   +     E++ +R++LPYDIDG+V KV++F++Q++LG
Sbjct: 233 SLTYLKQIGFKVNPEIKLCNTIDAVWQRIEEIEHMRASLPYDIDGVVIKVNDFAMQEELG 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++  TR+ DI + +GRTG +TP A+L PV I G+L++ ATLHNE
Sbjct: 293 FTVKTPRWAIAYKFKAEEVKTRVEDIFVTVGRTGKITPNAKLTPVQISGSLVSYATLHNE 352

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIRVGD V+V++AGE+IP++V + V+ R    +P+ FP  CP+
Sbjct: 353 DYITN-----------KDIRVGDEVVVRKAGEIIPEIVSVDVSNRTDVIKPYHFPKVCPV 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   +VR          A H C   + CSA+  E L HF SRDA NI+ LG++++     
Sbjct: 402 CMGHLVRFEGE------ADHYCVN-VDCSAKISEALVHFASRDAMNIDTLGERRVYQLHD 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     +    DI+TLQ  +      +E +   G  S   L D+I   +N S+E+ IF 
Sbjct: 455 AK----LLNTITDIYTLQEHKDA----LEKLEKMGPKSAEKLLDAIENSKNNSVEKLIFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ +  LA YY +  +               +  LI +  +G +IAQ++V F+
Sbjct: 507 LGIRHVGAKTSNVLAAYYKTIASLMDAT----------YDELIEIDEIGGVIAQSVVSFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   +E LL+    +   +    SS+ E  K V TGTLQ + R  A++ +   G  
Sbjct: 557 EIDHNRELIEDLLER-GVNGNYNHVVTSSKFEGMKFVLTGTLQTMGRTDAKKMIESFGGS 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           VS  +S KTD+++ G++ GSKL KAQ LGVK   EE+FL 
Sbjct: 616 VSGSVSSKTDVVVYGESAGSKLTKAQSLGVKTWTEEEFLN 655


>gi|312867643|ref|ZP_07727849.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405]
 gi|311096706|gb|EFQ54944.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405]
          Length = 652

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/702 (31%), Positives = 357/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ +   YY    P + DSEYD L R    +  A PD      P  P ++
Sbjct: 2   KTRMKELVELLNRYAYEYYTKDTPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+ +     +  SI +  E KIDG 
Sbjct: 59  VGGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRVRK-----EFPSISYVCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GED++  ++ +  IP VL    P  I VRGE Y+ +  
Sbjct: 114 SISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPE--PVNITVRGECYMPRAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q  
Sbjct: 172 FDRVNQIRQENGEPEFANPRNAAAGTLRQLDTKIVAKRNLATFLY--QEVSPTDQSSQEG 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+K+  LGF VN     A     I  +  ++  +R  LPYDIDG+V KV++ ++Q++LG
Sbjct: 230 VLEKLARLGFVVNQERVLAEDMEQIWDFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W +++KF  ++   ++L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DI   D V+V +AG++IP V+ ++ ++R  D Q  + P+ CP 
Sbjct: 350 DYI-----------AEKDIHQNDTVIVYKAGDIIPAVLRVVKDKRVSD-QALAIPTHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CQSELLHFEDE------VALRCINPL-CPAQIKEGLNHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     +   A I+ L      +        GF + S   LY++I   +  S E+ +F 
Sbjct: 451 AQ----LVEDVAGIYRLTVEDLLTLE------GFKEKSAEKLYEAIQASKENSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG+++++ L + +      A      IA           +  +G ++A+++  ++
Sbjct: 501 LGIRHVGSKVSQILLQEFHDLDQLATADPERIA----------SIDSLGMVVAESLKRYF 550

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
               +   ++ L +         EK  +   +    +V TG L+++ R +A+  +  LGA
Sbjct: 551 AQEGSKRLLQELKEAGVNMDYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLESLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD+++ G + GSKL KAQ+LG+++ +E     L
Sbjct: 611 KVTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDEAWLESL 652


>gi|171779630|ref|ZP_02920586.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281732|gb|EDT47166.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 652

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/702 (31%), Positives = 356/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L  E++ +   YY   +P + DSEYD L R    +  A PDL     P+ P   
Sbjct: 2   KERIQKLVDELNQYRKEYYTQDQPTVSDSEYDKLYRELVELEKANPDLIL---PDSPTQA 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLILDGFEKYQHETPLYSLQDAFSREELDDFDRRVKA-----EFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ Y  G     A RGDG  GE+++  ++ I  IP  L    P  I VRGE Y+ +  
Sbjct: 114 SVSLVYVDGVLQVGATRGDGSIGENITENVKRIKDIPHKLEE--PLTITVRGEAYLPRES 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G+  +ANPRNAA+G LR+LN   +  R L  F +   + +      Q +
Sbjct: 172 FDKINEERRESGQSEFANPRNAAAGTLRQLNTAVVAKRNLATFFY--QEVASTSMTTQND 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+++   GF VN      ++   I ++  E+ + R +LPYDIDG+V KV+  ++Q++LG
Sbjct: 230 VLEELSRYGFSVNPRRITTSSMEDIWAFIQEVAAERDSLPYDIDGIVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R+    P   P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVESKRNKQV-PMPIPETCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   F 
Sbjct: 398 CGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L      +        GF + S   LY++I   +  S E+ +F 
Sbjct: 450 ---TADLVHDVADIYRLSVEDLLTLD------GFKEKSAEKLYNAIQASKANSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ +R L + + S +N        IA           +  +G +IA+++  ++
Sbjct: 501 LGIRHVGAKASRQLLEVFESIENLVAADEEAIA----------NIDGLGTVIAKSLRSYF 550

Query: 617 QNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   +  L            + +  +++    +V TG LQ++ R++A+E +  LGA
Sbjct: 551 AKKEAEELLAELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLQRLTRNEAKEKLQDLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTDI++ G + GSKL KAQ LG+ + +E     L
Sbjct: 611 KVTGSVSKKTDIVVAGADAGSKLTKAQALGIDVRDEAWLESL 652


>gi|319946751|ref|ZP_08020985.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641]
 gi|319746799|gb|EFV99058.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641]
          Length = 652

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/700 (30%), Positives = 362/700 (51%), Gaps = 53/700 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L   ++++ + YY    P + D EYD L R   A+  A P+L +   PN P +++G
Sbjct: 4   RMKELVTLLNHYAEEYYTKDAPSVSDYEYDKLYRELVALEEAHPELVQ---PNSPTHRVG 60

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G +     K  H+ P  SL+  ++ E+L  F  R+ +     +  ++ +  E KIDG  I
Sbjct: 61  GTILKGFEKYQHTYPLYSLQDAFSYEELVAFDQRVRK-----EFPAVTYVCELKIDGLSI 115

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y +G     A RGDG  GE+++  ++ +  IP VL    P  + VRGE Y+ +  F 
Sbjct: 116 SLSYVEGVLETGATRGDGSIGENITENLKRVRDIPLVLPE--PLTLTVRGECYMPRASFD 173

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
           A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L
Sbjct: 174 AVNLSRQENGEAEFANPRNAAAGTLRQLDTKIVAERKLATFLY--QEASPTDQTSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            K+  LGF VN   +   +   + +Y  E+ ++R  LPYDIDG+V KV++ ++Q++LG  
Sbjct: 232 AKLERLGFVVNPHHKTVTSIEQVWAYIQEVAAMRDQLPYDIDGVVIKVNDLAIQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ +++++R  + +    PS CP CQ
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVMDKRVSEER-LEIPSHCPSCQ 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ  E L HF SRDA NI GLG   ++  F  E
Sbjct: 400 SELLHFEDE------VALRCINPR-CPAQIKEGLAHFASRDAMNITGLGPAVVEKLFSKE 452

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++  A I+ L             + GF + S   L D+I   +  S E+ +F LG
Sbjct: 453 ----LVQDVAGIYRLTVDDLL------QLDGFKEKSAQKLIDAIQASKGNSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L + + S    A+     IA           +  +G ++A+++  ++  
Sbjct: 503 IRHVGSKASQLLLQEFHSIPALAEAEVERIAA----------IDSLGMVVAESLKRYFAQ 552

Query: 619 PRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +E      V+      +    + +  K +V TG L+++ R +A+  +  LGA V
Sbjct: 553 EGSQLLLEELKDAGVNLDYLGQKVAADAPLSGKTVVLTGKLERLTRSEAKAKLEALGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+ TD+++ G + GSKL KAQ+L ++I +E     L
Sbjct: 613 TGSVSKNTDLLVAGSDAGSKLSKAQELSIEIQDEAWLESL 652


>gi|268594283|ref|ZP_06128450.1| DNA ligase [Neisseria gonorrhoeae 35/02]
 gi|268547672|gb|EEZ43090.1| DNA ligase [Neisseria gonorrhoeae 35/02]
          Length = 827

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/850 (29%), Positives = 392/850 (46%), Gaps = 171/850 (20%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+    + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+
Sbjct: 4   SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123
            P  ++GGE      +V H +P LSL   ++ +         ++  F  R+       D 
Sbjct: 61  SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 117

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIP 182
            +  + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N+P
Sbjct: 118 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVP 177

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
           E+IEVRGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF +
Sbjct: 178 ELIEVRGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 237

Query: 242 GLGKTSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            + +    F A+   + L   + LGF + N           ++++Y  M+  R  LPY+I
Sbjct: 238 SIARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 297

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+
Sbjct: 298 DGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 357

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I  
Sbjct: 358 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 406

Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447
            R                                    +P+  P+ CPIC+S + R+   
Sbjct: 407 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE 466

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  
Sbjct: 467 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHF 516

Query: 508 ADIF-----TLQRRQQT------------------STTKIENILGFGD--VSVTNLYDSI 542
           AD++     TLQ+ ++T                    +K     G         N+   I
Sbjct: 517 ADLYRIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGI 576

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------- 583
              +   L RF+F+LGIRHVG   A++LA+ + + +   +                    
Sbjct: 577 ESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSI 636

Query: 584 ------------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE 614
                       I+ ++A         + +P                  + +  AQA+ E
Sbjct: 637 AHFFAQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWE 696

Query: 615 ---------------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIE 648
                                +    +N   +E L    +      E    S      + 
Sbjct: 697 LAGQSIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVA 756

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K  V TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +
Sbjct: 757 GKTFVLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSV 816

Query: 709 MNEEQFLFLL 718
           ++E + L LL
Sbjct: 817 LSEAELLTLL 826


>gi|255038855|ref|YP_003089476.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053]
 gi|254951611|gb|ACT96311.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053]
          Length = 695

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/734 (29%), Positives = 365/734 (49%), Gaps = 68/734 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQ    +  L +++ Y++D YYQ S   I D E+D L +   A+   +P   +    
Sbjct: 1   MNPEQ---RIQELSEKLHYYNDRYYQDSVSEISDYEFDQLLKELQALESEYPQFRQD--- 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  S   V H  P LSL+  +N ++LR F  R+ R     D  +  +  E
Sbjct: 55  DSPTQRVGGTVTKSFNAVYHRYPMLSLDNTYNEDELRSFDDRVRRGL---DGEAYEYICE 111

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            K DG  ++  YE G  V    RGDG  G++++  ++ I ++P  +  + IP + E+RGE
Sbjct: 112 LKFDGISLSFTYENGVLVRGVTRGDGTRGDEITNNVKTIRSLPLRVKADGIPPVFEIRGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249
            ++  + F  LN+EM  +G   YANPRNAASG  +  +  +  R  L+ +++    +   
Sbjct: 172 GFMPISSFQKLNEEMETLGENQYANPRNAASGSFKLQDSAEAARRGLDSYIYSF-LSDNA 230

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           F K   E L  ++  GF V+ G ++ +T   +++Y +E +  R+ LP   DG+V K++ F
Sbjct: 231 FFKSHEESLLALKSWGFNVSPGWKKVSTIDEVIAYIHEWEEKRAHLPLATDGIVIKINSF 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL----------- 358
             Q++LG  A+SPRW IS+K+  +     L  +  Q+GRTG +TPVA L           
Sbjct: 291 EQQRELGFTAKSPRWAISYKYKAENKPAVLRMVTYQVGRTGAVTPVANLCDLSERALPYN 350

Query: 359 --EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
             + V++ G  +  ATLHN + ++ L            +R+ D V V+++GE+IPK+  +
Sbjct: 351 QVKGVHLSGTRVKRATLHNANELERL-----------GVRLNDTVFVEKSGEIIPKITGV 399

Query: 417 IVNER-HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            V++R + + +P  FP+ CP C   + R+          A  C     C  Q   R++HF
Sbjct: 400 DVSQRENYETEPVIFPTHCPECGHELQRNEGE------VAFFCPNDSHCPPQLKGRIEHF 453

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK--------IENI 527
           + R A NIE LG+ +++  F  +     +R PAD++ L   +     K            
Sbjct: 454 IHRKAMNIESLGEGKIELLFDLD----LVRTPADLYDLNHDKLLGLEKNLLNEETGKLKK 509

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
           + F + +V N+   I   R +  +  +F+LGIR VG  +A  LA Y+ S           
Sbjct: 510 ISFREKTVENILKGIEVSRTVPFKNVLFALGIRFVGQTVAEKLAAYFKSM---------- 559

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSS 645
            A     +  L  VP +G  IA +I  F+  P N   VE L +         +  +  S 
Sbjct: 560 RALRAATYEQLTAVPEIGGRIALSIESFFSVPENQMLVERLERAGLQMESDEKPVEIESD 619

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL 704
            ++ K  V +G  +  +R + +E +   G  V + +S K + ++ G N G SKLEKA++L
Sbjct: 620 LLDGKTFVISGVFENFERDELKEKIEANGGKVLSGVSGKLNYLLAGANMGPSKLEKARKL 679

Query: 705 GVKIMNEEQFLFLL 718
           GV I++EE+FL ++
Sbjct: 680 GVTIISEEEFLAMI 693


>gi|260753112|ref|YP_003226005.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552475|gb|ACV75421.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 731

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/744 (39%), Positives = 444/744 (59%), Gaps = 54/744 (7%)

Query: 2   KKRQLIPI---EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
            ++Q +P    + LS EQA  EL  L   IS++D  Y+    P + DSEYDAL  R   I
Sbjct: 13  PEKQDLPALAPKDLSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRI 72

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
              FPDL R   P+ P  K+G   N  L K+ H    LSL+  +  +D+  F+ R+ RF+
Sbjct: 73  EQFFPDLIR---PDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFF 129

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL- 177
             K++ ++  T+EPKIDG   ++RYEKG    A  RGDG  GEDV+  +R I  IP+ L 
Sbjct: 130 NLKENQAVICTVEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLK 189

Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-L 236
             N PEIIE+RGEVY++K+DF ALN       +K +ANPRNAA+G LR+L+P    R  L
Sbjct: 190 GDNWPEIIEIRGEVYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDPNITARRSL 249

Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
            F  HG G+ + + A  QY M++ +   G  V+N + +A+    ++ +Y ++++ R+ L 
Sbjct: 250 RFLAHGWGEATSLPADTQYGMMKVIESYGLSVSNLLARADNIGQMLDFYQKIEAERADLD 309

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           +DIDG+VYK+D+   Q++ G  AR+PR+ ++HKF  ++A T LLDI+IQ+GRTG+LTPVA
Sbjct: 310 FDIDGVVYKLDQLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVA 369

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           +LEPV +GG ++++ATLHN D I+ L            +R  DRVLV+RAG+VIP++V+ 
Sbjct: 370 KLEPVTVGGVVVSSATLHNSDEIERL-----------GVRPEDRVLVQRAGDVIPQIVEN 418

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +      D   + FP  CP+C S   R+          A RCTGGL C AQ++ERL HFV
Sbjct: 419 LTP--DVDRPIWHFPHRCPVCDSVARREEGE------VAWRCTGGLICPAQRVERLCHFV 470

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR AF I+GLGK  ++ FF  +     I  PADIF L +++Q    +     G+G++SV 
Sbjct: 471 SRTAFEIDGLGKSHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVD 522

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN------IIAH 590
           NL  +I+KRR +  +RF+F+LGIRHVGA  AR LAK Y ++ NF   I+       I+  
Sbjct: 523 NLISAIDKRRKVPFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQP 582

Query: 591 NNDDWLSLIR------------VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
           ++++     +            +P +G  I +++++F+    N   V  LL+EV      
Sbjct: 583 SSEESEEKYQKRVDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLY 642

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E   SS +  K +VFTG+LQKI R +A+     LGA V++ +S+KT++++ G+  GSKL
Sbjct: 643 FE-LASSPLSGKIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKL 701

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYN 722
            KA++L + I++E+++  +++   
Sbjct: 702 SKAKELDISIIDEDRWHRIVENDG 725


>gi|19745839|ref|NP_606975.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS8232]
 gi|94990137|ref|YP_598237.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10270]
 gi|139474058|ref|YP_001128774.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes str.
           Manfredo]
 gi|81632934|sp|Q8P1L1|DNLJ_STRP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123258039|sp|Q1JHP3|DNLJ_STRPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216247|sp|A2RFD0|DNLJ_STRPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|19747987|gb|AAL97474.1| putative DNA ligase [Streptococcus pyogenes MGAS8232]
 gi|94543645|gb|ABF33693.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10270]
 gi|134272305|emb|CAM30559.1| DNA ligase [Streptococcus pyogenes str. Manfredo]
          Length = 652

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/702 (30%), Positives = 359/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVKA-----EFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+     G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q E
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLY--QEASPTARNQQNE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F 
Sbjct: 398 CGSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F 
Sbjct: 450 ---LAGFVHDVADIYQLTK------EDFMQLDGIKEKSADKLLAAIEASKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G++++R + + Y             IA          R+  +G  IAQ++ +++
Sbjct: 501 LGIRHIGSKVSRLILEVYGDISALLTAKEEEIA----------RIDGLGSTIAQSLTQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +       V+      V+      + N  + +    +V TG L ++ R++A++ +  LGA
Sbjct: 551 EQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 611 KVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRKL 652


>gi|268600753|ref|ZP_06134920.1| DNA ligase [Neisseria gonorrhoeae PID18]
 gi|268683767|ref|ZP_06150629.1| DNA ligase [Neisseria gonorrhoeae SK-92-679]
 gi|268686007|ref|ZP_06152869.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035]
 gi|293399617|ref|ZP_06643770.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62]
 gi|268584884|gb|EEZ49560.1| DNA ligase [Neisseria gonorrhoeae PID18]
 gi|268624051|gb|EEZ56451.1| DNA ligase [Neisseria gonorrhoeae SK-92-679]
 gi|268626291|gb|EEZ58691.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035]
 gi|291610186|gb|EFF39308.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62]
          Length = 829

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/850 (29%), Positives = 391/850 (46%), Gaps = 171/850 (20%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+    + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+
Sbjct: 6   SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123
            P  ++GGE      +V H +P LSL   ++ +         ++  F  R+       D 
Sbjct: 63  SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIP 182
            +  + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N+P
Sbjct: 120 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVP 179

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
           E+IEVRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF +
Sbjct: 180 ELIEVRGEVLMLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 239

Query: 242 GLG-KTSEIFAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  +   + A+   + L   + LGF + N           ++++Y  M+  R  LPY+I
Sbjct: 240 SVARQQGGLIAEEHIQELAYFQALGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG V KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+
Sbjct: 300 DGTVVKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I  
Sbjct: 360 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 408

Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447
            R                                    +P+  P+ CPIC+S + R+   
Sbjct: 409 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE 468

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  
Sbjct: 469 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHF 518

Query: 508 ADIF-----TLQRRQQT------------------STTKIENILGFGD--VSVTNLYDSI 542
           AD++     TLQ+ ++T                    +K     G         N+   I
Sbjct: 519 ADLYRIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGI 578

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------- 583
              +   L RF+F+LGIRHVG   A++LA+ + + +   +                    
Sbjct: 579 ESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSI 638

Query: 584 ------------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE 614
                       I+ ++A         + +P                  + +  AQA+ E
Sbjct: 639 AHFFAQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWE 698

Query: 615 ---------------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIE 648
                                +    +N   +E L    +      E    S      + 
Sbjct: 699 LAGQSIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVA 758

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K  V TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +
Sbjct: 759 GKTFVLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSV 818

Query: 709 MNEEQFLFLL 718
           ++E + L LL
Sbjct: 819 LSEAELLTLL 828


>gi|15674800|ref|NP_268974.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes M1 GAS]
 gi|71910386|ref|YP_281936.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS5005]
 gi|81533831|sp|Q9A0J5|DNLJ_STRP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13621930|gb|AAK33695.1| putative DNA ligase [Streptococcus pyogenes M1 GAS]
 gi|71853168|gb|AAZ51191.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS5005]
          Length = 652

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/702 (30%), Positives = 359/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVKA-----EFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPYQLSE--PLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+     G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q E
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLY--QEASPTARNQQNE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F 
Sbjct: 398 CGSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F 
Sbjct: 450 ---LAGFVHDVADIYQLTK------EDFMQLDGIKEKSADKLLAAIEASKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G++++R + + Y             IA          R+  +G  IAQ++ +++
Sbjct: 501 LGIRHIGSKVSRLILEVYGDISALLTAKEEEIA----------RIDGLGSTIAQSLTQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +       V+      V+      + N  + +    +V TG L ++ R++A++ +  LGA
Sbjct: 551 EQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 611 KVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652


>gi|315613211|ref|ZP_07888121.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296]
 gi|315314773|gb|EFU62815.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296]
          Length = 652

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/701 (30%), Positives = 361/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +   +       +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKELPQP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A +   I  +  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LEHLEQLGFVVNPKRILAESMDEIWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S+++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 DSQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L+              G  + S + LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLKEDDFLLLE------GVKEKSASKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IAQ++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFA 551

Query: 618 -NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               NI   E     V+           + +    +V TG L+++ R +A+  +  LGA 
Sbjct: 552 TEGSNILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KT++++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|149173204|ref|ZP_01851835.1| DNA ligase [Planctomyces maris DSM 8797]
 gi|148848010|gb|EDL62342.1| DNA ligase [Planctomyces maris DSM 8797]
          Length = 671

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/711 (31%), Positives = 365/711 (51%), Gaps = 47/711 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R E+  L +++ +H+  YY  +KP I D EYD L +R + +    P+    + P  P  
Sbjct: 3   VRTEIEELRKQLEHHNRLYYLDAKPEITDREYDRLMKRLEQLETDHPEY---DSPESPTK 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+GG        V H +P LS++ I+ +E L +F  RI +   +   + +  T E KIDG
Sbjct: 60  KVGGAPIEGFQTVAHRLPMLSIDNIFELEGLTEFEARICKLLGQ---DQVELTAEYKIDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             +++ YE+G+ +    RGDG  G+D++  +R I  +P  L + N PE++EVRGE YIS 
Sbjct: 117 VAVSLIYEEGRLIQGLTRGDGQQGDDITHNVRTIIGVPLRLETENPPELLEVRGEAYISN 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           +DF  LN EM   G++P+AN RN  +G L+ L+P     R + FF HG+G  + +  +  
Sbjct: 177 SDFQVLNVEMQEQGKEPFANSRNTTAGGLKLLDPKLCAKRKIRFFAHGIGAMAGVDYQTH 236

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  ++ +G P   GV+        + +   M      L +++DG+V KV+ F  +++
Sbjct: 237 IEYLAAIQEMGIPATPGVKAFPDLKTTMEHVQTMMDDLHALDFEVDGIVLKVNRFDQREE 296

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW++++K+   +A TR   I  Q+G+TG +TPVA LEPV I G  ++ A+LH
Sbjct: 297 LGNTSKSPRWVVAYKWERYEAVTRAESIVFQVGKTGTVTPVANLEPVPIAGTTVSRASLH 356

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D ++ L            I++GD V+V++AG++IP VV +  + R    Q   FP+ C
Sbjct: 357 NRDEMERL-----------GIQIGDWVVVEKAGKIIPHVVRVEEHRRDGSQQELEFPTHC 405

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +++D      +     RC     C A   E L+++ SR A +IEG+G + ++  
Sbjct: 406 PECDTLLIQD------EGGVYIRCPNP-NCPAMLRETLRYYASRQAMDIEGMGIKMIEQL 458

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                        ADI+ L          +  +   G+ S+ NL   I   +   L R +
Sbjct: 459 LGQGLLK----GLADIYRLHNYY----GDLVALERQGEKSIENLLAGIENSKTQPLWRLL 510

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             L IRHVG+  AR L K + +    AQ+    +A           V  +G +IA+++  
Sbjct: 511 TGLNIRHVGSSNARILEKQFGTIDEIAQQSVEELAA----------VDEIGPVIAESVYT 560

Query: 615 FYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           F+ +      ++ L      +   + +     +  ++ K LV TGTL +  R +A+E + 
Sbjct: 561 FFHSDFGTKLIDDLKSAGLNMGSPVEKTTTEAAGILDGKTLVVTGTLTQFTRDEAKELIR 620

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + G   S  +S KTD ++ G+  GSKL KA++L V ++ E +FL LL +  
Sbjct: 621 KHGGKASGSVSSKTDYLVAGEKAGSKLSKAEELNVPVLTEIEFLELLGESG 671


>gi|47569950|ref|ZP_00240615.1| DNA ligase, NAD-dependent [Bacillus cereus G9241]
 gi|47553396|gb|EAL11782.1| DNA ligase, NAD-dependent [Bacillus cereus G9241]
          Length = 615

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/657 (35%), Positives = 365/657 (55%), Gaps = 49/657 (7%)

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ + 
Sbjct: 2   SEDSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYI 58

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RG
Sbjct: 59  CELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARG 116

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E
Sbjct: 117 EAYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEE 176

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  +  LGF  N   R   T   +++Y  E +  RS L Y+IDG+V KVD+
Sbjct: 177 KTIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRSHLDYEIDGIVIKVDD 236

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++
Sbjct: 237 VALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIV 296

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +
Sbjct: 297 RRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEY 345

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG+
Sbjct: 346 HMPTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGE 398

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   F     A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  
Sbjct: 399 RVITQLFD----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKEN 448

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SLER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +
Sbjct: 449 SLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKM 498

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQR 663
           AQ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R
Sbjct: 499 AQSVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 558

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 559 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 615


>gi|194097948|ref|YP_002000994.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945]
 gi|239998421|ref|ZP_04718345.1| putative DNA ligase [Neisseria gonorrhoeae 35/02]
 gi|254781380|sp|B4RJQ9|DNLJ_NEIG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193933238|gb|ACF29062.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945]
 gi|317163707|gb|ADV07248.1| putative DNA ligase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 823

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/845 (29%), Positives = 390/845 (46%), Gaps = 171/845 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N+PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG+V 
Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF- 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYR 517

Query: 512 ----TLQRRQQT------------------STTKIENILGFGD--VSVTNLYDSINKRRN 547
               TLQ+ ++T                    +K     G         N+   I   + 
Sbjct: 518 IDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKT 577

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------ 583
             L RF+F+LGIRHVG   A++LA+ + + +   +                         
Sbjct: 578 PELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFA 637

Query: 584 -------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE----- 614
                  I+ ++A         + +P                  + +  AQA+ E     
Sbjct: 638 QAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQS 697

Query: 615 ----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLV 653
                           +    +N   +E L    +      E    S      +  K  V
Sbjct: 698 IEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFV 757

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E +
Sbjct: 758 LTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAE 817

Query: 714 FLFLL 718
            L LL
Sbjct: 818 LLTLL 822


>gi|254493140|ref|ZP_05106311.1| DNA ligase [Neisseria gonorrhoeae 1291]
 gi|268598398|ref|ZP_06132565.1| DNA ligase [Neisseria gonorrhoeae MS11]
 gi|226512180|gb|EEH61525.1| DNA ligase [Neisseria gonorrhoeae 1291]
 gi|268582529|gb|EEZ47205.1| DNA ligase [Neisseria gonorrhoeae MS11]
          Length = 829

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/850 (29%), Positives = 391/850 (46%), Gaps = 171/850 (20%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+    + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+
Sbjct: 6   SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123
            P  ++GGE      +V H +P LSL   ++ +         ++  F  R+       D 
Sbjct: 63  SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIP 182
            +  + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N P
Sbjct: 120 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTP 179

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
           E+IEVRGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF +
Sbjct: 180 ELIEVRGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 239

Query: 242 GLGKTSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            + +    F A+   + L   + LGF + N           ++++Y  M+  R  LPY+I
Sbjct: 240 SIARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+
Sbjct: 300 DGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I  
Sbjct: 360 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 408

Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447
            R                                    +P+  P+ CPIC+S + R+   
Sbjct: 409 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE 468

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  
Sbjct: 469 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHF 518

Query: 508 ADIF-----TLQRRQQT------------------STTKIENILGFGD--VSVTNLYDSI 542
           AD++     TLQ+ ++T                    +K     G         N+   I
Sbjct: 519 ADLYRIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGI 578

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------- 583
              +   L RF+F+LGIRHVG   A++LA+ + + +   +                    
Sbjct: 579 ESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSI 638

Query: 584 ------------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE 614
                       I+ ++A         + +P                  + +  AQA+ E
Sbjct: 639 AHFFAQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWE 698

Query: 615 ---------------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIE 648
                                +    +N   +E L    +      E    S      + 
Sbjct: 699 LAGQSIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVA 758

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K  V TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +
Sbjct: 759 GKTFVLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSV 818

Query: 709 MNEEQFLFLL 718
           ++E + L LL
Sbjct: 819 LSEAELLTLL 828


>gi|270292770|ref|ZP_06198981.1| DNA ligase, NAD-dependent [Streptococcus sp. M143]
 gi|270278749|gb|EFA24595.1| DNA ligase, NAD-dependent [Streptococcus sp. M143]
          Length = 652

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/701 (30%), Positives = 361/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYASEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKELPHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGATRGDGSIGENITENLKRVKDIPLTLPEKL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DLVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKHLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLAGQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S+++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 DSQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L+              G  + S + LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLKEEDFLLLE------GVKEKSASKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IA+++  F+ 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGSVIAKSLQTFFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   ++      V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSKILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|302537077|ref|ZP_07289419.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
 gi|302445972|gb|EFL17788.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
          Length = 736

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/742 (29%), Positives = 359/742 (48%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
              AR++   L +++  H   YY   +P++ D+E+D L R  +A+   +P+L     P+ 
Sbjct: 11  PTAAREQHQLLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRSLEALEEQYPEL---RTPDS 67

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  ++ E+L  +  R+ R     D +   +  E K
Sbjct: 68  PTQKVAGAYETDFASVEHRERMLSLDNAFDDEELSAWADRVARDVNTPDYH---YLCELK 124

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L  + IP ++E+RGEVY
Sbjct: 125 VDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPALVEIRGEVY 184

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++    KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 185 FPMEKFEELNARLVEASGKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGFEI 244

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q +  + +R  G P     +  ++   +  +       R ++ ++IDG+V K+DE +L
Sbjct: 245 ERQSQAYELLREWGLPTARHNKVVSSLAEVREFIALFGENRHSVEHEIDGVVVKLDEIAL 304

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 305 QGRLGSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFA 364

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN++ +K            + + +GD V++++AG+VIP+++  +V+ R    + F  P
Sbjct: 365 TLHNQEVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMP 413

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC  G  C AQ  ER+ +   R + +IE  G    
Sbjct: 414 ALCPECGTEL-----RPMKEGDIDVRCPNGQTCPAQLRERIYYLAGRQSLDIENFGIVAA 468

Query: 492 DFFFKSEDPA-FSIRIPADIFTL--------------------QRRQQTSTTK----IEN 526
                  +PA   +    D+F L                    +R  +T   K      N
Sbjct: 469 AALTGPLEPAQPPLLDEGDLFDLTIEQLLPIKAYVRDPDSGLPKRDPKTGEEKIVTVFAN 528

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + ++I   +   L R I  L IRHVG   A +LA+ + S     Q    
Sbjct: 529 QKGEPKKNALAMLENIAAAKQRPLARIINGLSIRHVGPVAAEALAREFRSIDRIEQATEE 588

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVS 644
            +               VG IIA ++ E++    +   +             G  E+   
Sbjct: 589 ELTAT----------EGVGAIIAASLKEWFAVDWHQEILRKWRAAGVRMEEEGSAEEEGP 638

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTLQ   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 639 RPLEGLTVVVTGTLQNHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAVQL 698

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
           G+ I+++  F  LL+Q     R
Sbjct: 699 GLAILDDAGFEVLLEQGADAAR 720


>gi|163841673|ref|YP_001626078.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
 gi|190359277|sp|A9WTZ3|DNLJ_RENSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|162955149|gb|ABY24664.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
          Length = 758

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/738 (29%), Positives = 369/738 (50%), Gaps = 61/738 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E S L ++I ++   YY  ++ ++ D+E+D L RR + I    P+L  +   + P  +
Sbjct: 33  RAEYSKLVEDIRHYRFAYYNEAESLVSDAEFDVLFRRLEEIEALHPELISN---DSPTQE 89

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEP 132
           +GGE++ +   V H+    SLE +++IE+L+ +I +     +K   +      + +  E 
Sbjct: 90  VGGEVSAAFTPVQHTSQIYSLEDVFSIEELQSWIIKAQANAEKLAGSIVAERPLRWLTEL 149

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           KIDG  + + Y  G+ V AA RGDG +GED++  +  I  IPR L   N+PE +E+RGEV
Sbjct: 150 KIDGLAVNLLYRNGQLVRAATRGDGITGEDITHNVLTIQEIPRQLRGENLPEEVEIRGEV 209

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           +I+  DFLALN++++  GR P+ANPRNAA+G LR+ +P D   R L+  VHG+G    + 
Sbjct: 210 FIASKDFLALNEQIVGTGRAPFANPRNAAAGSLRQKDPADTAKRPLSMLVHGIGSRIGLD 269

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    ++  G P +   +    +  ++ Y N     R  L ++IDG+V K+D+F+
Sbjct: 270 VASQSESYALLKAWGLPTSPYFKVLTGYQEVLDYINHYGEHRHDLLHEIDGIVIKIDDFA 329

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG  +R PRW +++K+  ++  T+LLDI + +GRTG +TP   +EPV + G+ +  
Sbjct: 330 SQNALGFTSRVPRWAVAYKYPPEEVHTKLLDILVNVGRTGRVTPFGVMEPVKVAGSTVEM 389

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP++V  ++  R    + F  
Sbjct: 390 ATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEIVGPVLALRDGREREFVM 438

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +         +     RC    +C  Q  ER+ H   R AF+IE LG + 
Sbjct: 439 PTECPSCGTAL-----APAKEGDVDIRCPNAKSCPDQLRERVFHLAGRGAFDIEALGWEA 493

Query: 491 LDFFFKSEDPAF-SIRIPADIFTLQRRQQTS------------------------TTKIE 525
                +  +P    +R  A IF L                               +   E
Sbjct: 494 AIALTQPAEPELAPVRNEAQIFNLVAEDLALVKIKREKKVKGVLSGVHELVPYFYSKGTE 553

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                   +   L+  + K +   L R + +L IRHVG   +R+LA  + S         
Sbjct: 554 EKPSEPTSNTVKLFIELEKAKAQPLWRVLVALSIRHVGPTASRALATAFGSMAAIRAASE 613

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
             +A           V  VG  IA A++E++    +   ++A   +        +++V  
Sbjct: 614 PELA----------EVDGVGPTIAAALIEWFAEDWHREIIDAWAADGVRMADERDESVRR 663

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +    +V TG+L+K  R +A+E +   G   +  +S+ TD ++ G+N G+KL+KA++LG
Sbjct: 664 TLAGLTIVVTGSLEKFNRDQAKEAIINRGGKSAGSVSKNTDYVVAGENAGTKLDKAEKLG 723

Query: 706 VKIMNEEQFLFLLQQYNT 723
           V +++E  F  LL     
Sbjct: 724 VTVLDEAGFETLLAHGPD 741


>gi|21910027|ref|NP_664295.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS315]
 gi|28896275|ref|NP_802625.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes SSI-1]
 gi|81759290|sp|Q8K831|DNLJ_STRP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21904217|gb|AAM79098.1| putative DNA ligase [Streptococcus pyogenes MGAS315]
 gi|28811526|dbj|BAC64458.1| putative DNA ligase [Streptococcus pyogenes SSI-1]
          Length = 652

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/702 (30%), Positives = 358/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVKA-----EFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+     G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q E
Sbjct: 172 FKAINEGRQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLY--QEVSPTARNQQNE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F 
Sbjct: 398 CGSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F 
Sbjct: 450 ---LAGFVHDVADIYQLTK------EDFMQLDGIKEKSADKLLAAIEASKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G++++R + + Y             IA          R+  +G  IAQ++ +++
Sbjct: 501 LGIRHIGSKVSRLILEVYGDISALLTAKEEEIA----------RIDGLGSTIAQSLTQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +       V+      V+      + N  + +    +V TG L ++ R++A++ +  LGA
Sbjct: 551 EQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 611 KVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652


>gi|327461089|gb|EGF07422.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1057]
          Length = 652

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/702 (32%), Positives = 363/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRIRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q E
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQADSQEE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLAALGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +P   PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEPLEIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYTAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E   + V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEEGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|86131748|ref|ZP_01050345.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134]
 gi|85817570|gb|EAQ38744.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134]
          Length = 664

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/710 (31%), Positives = 360/710 (50%), Gaps = 53/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE+   ++  L QE+  H+  YY    P I D E+D    +  A+  A P     +DP
Sbjct: 1   MTIEE---QILQLRQELREHNYNYYTLDTPTISDFEFDKKLEQLKALELANPAY---DDP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P +++GG +  +   + H     SL+  ++ EDL  +  R+ +      D  + +T E
Sbjct: 55  NSPTHRVGGAVTKNFETIVHEHRMYSLDNSYSKEDLEDWEARVKKMV----DGEVHYTCE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++ YE G+ + A  RGDG  G+DV+  I+ I ++P  L  + P   ++RGE+
Sbjct: 111 LKYDGASISLTYENGELLRAVTRGDGLQGDDVTTNIKTIKSVPLKLKGDYPPKFDIRGEI 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            +  + F A+N E   +G + Y NPRN ASG L+  +  ++  R L   ++ +   + + 
Sbjct: 171 VLPWDGFHAMNAEREELGFELYRNPRNTASGSLKLQDSAEVAKRPLQCLLYNI-TGNNLG 229

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E LQK R  GF V +    A +   ++ + N     R  LPY+ DG+V KV+   
Sbjct: 230 ITTQIESLQKARDWGFMVPDAAVLAKSIDEVLDFINHWDKARHDLPYETDGVVVKVNGLQ 289

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A++PRW +++KF  +Q STRL +I  Q+GRTG +TPVA LEPV + G  +  
Sbjct: 290 QQEELGYTAKAPRWAMAYKFKAEQVSTRLREITYQVGRTGAITPVANLEPVELAGTTVKR 349

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D I+ L           DIR GD V V++ GE+IPK++ + + +R  D++P  +
Sbjct: 350 ASLHNADQIERL-----------DIREGDEVFVEKGGEIIPKIIAVDLTKRPADSEPTDY 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C +++VR          A H C   + C  Q + R++H++SR A +I+GLG + 
Sbjct: 399 IAECPECDTQLVRKEGE------AQHYCPNDMGCPPQIIGRIQHYISRKAMDIDGLGGET 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            I   AD++ L   Q     ++         S  NL + +     I  
Sbjct: 453 VALLVNE----GLILNYADLYELTVAQLLPLERMAQ------KSAENLVNGVQASVKIPF 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIR+VG  +A+ LAK+Y S           +          + V  +G  IA+
Sbjct: 503 EKVLFGLGIRYVGETVAKKLAKHYKSIDAIISATEEEL----------VAVDEIGIKIAE 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++V F+    +I  +E L               N S  +  K  V +G  + + R+  ++
Sbjct: 553 SVVAFFAKAEHIALIERLRSYGVQLEISAEKLANQSDVLAGKTFVVSGVFE-MPRNDLKK 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
            +   G  VS+ +S KT  ++ G+  G SKLEKAQ+LG+ I++E +FL L
Sbjct: 612 LIEDNGGKVSSSISSKTSYLVAGEKMGPSKLEKAQKLGITIISEIEFLAL 661


>gi|268681538|ref|ZP_06148400.1| DNA ligase [Neisseria gonorrhoeae PID332]
 gi|268621822|gb|EEZ54222.1| DNA ligase [Neisseria gonorrhoeae PID332]
          Length = 829

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/850 (29%), Positives = 390/850 (45%), Gaps = 171/850 (20%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+    + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+
Sbjct: 6   SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123
            P  ++GGE      +V H +P LSL   ++ +         ++  F  R+       D 
Sbjct: 63  SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIP 182
            +  + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N P
Sbjct: 120 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTP 179

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
           E+IEVRGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF +
Sbjct: 180 ELIEVRGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 239

Query: 242 GLGKTSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            + +    F A+   + L   + LGF + N           ++++Y  M+  R  LPY+I
Sbjct: 240 SIARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+
Sbjct: 300 DGTVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I  
Sbjct: 360 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 408

Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447
            R                                    +P+  P+ CPIC+S + R+   
Sbjct: 409 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPTRCPICRSEIEREEGE 468

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  
Sbjct: 469 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHF 518

Query: 508 ADIF-----TLQRRQQT------------------STTKIENILGFGD--VSVTNLYDSI 542
           AD++     TLQ+ ++T                    +K     G         N+   I
Sbjct: 519 ADLYRIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGI 578

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------- 583
              +   L RF+F+LGIRHVG   A++LA+ + + +   +                    
Sbjct: 579 ESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSI 638

Query: 584 ------------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE 614
                       I+ ++A         + +P                  + +  AQA+ E
Sbjct: 639 AHFFAQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWE 698

Query: 615 ---------------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIE 648
                                +    +N   +E L    +      E    S      + 
Sbjct: 699 LAGQSIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVA 758

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K  V TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +
Sbjct: 759 GKTFVLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSV 818

Query: 709 MNEEQFLFLL 718
           ++E + L LL
Sbjct: 819 LSEAELLTLL 828


>gi|300813135|ref|ZP_07093512.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300495889|gb|EFK31034.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 671

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/716 (29%), Positives = 366/716 (51%), Gaps = 51/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+P+L   + 
Sbjct: 2   AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDKKYARLLELEAAYPEL---KS 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +    ++GGE+N  L KV H +P LS+  +++ E+L +F  R+ +       + + + +
Sbjct: 59  ADSITQRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YE+G+   A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE
Sbjct: 115 ELKIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
            Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++        
Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPP-A 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+ 
Sbjct: 232 GIDSQHQAIGEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDL 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ  LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G  + 
Sbjct: 292 ALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVQLAGTTVA 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D +  L           DIR+GD V + +AG++IP++ ++++++R  D+ P+ 
Sbjct: 352 RASLHNPDLLAKL-----------DIRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYE 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C   +V            A RC    +C AQ  E + HF SR A NI GLG +
Sbjct: 401 VPTKCPSCGEDLVHLDKE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPK 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +      +     +   AD++ L             +  F + S+ NL  +I++ R  S
Sbjct: 454 IVKQLIAKD----LVHNVADLYYLTADDL------SQLDHFKEKSINNLLAAIDQSRKNS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E  +F LGI +VG + A+ +A+ + +    A          +     L  +  +G  IA
Sbjct: 504 VELVLFGLGIDNVGGKAAQLIARKFKNMSKIA----------SASVQELTAIDTIGMTIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +++  ++Q       +  L +       +G   +   +  + K +V TG L    R +  
Sbjct: 554 ESLTAYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFT 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + +  LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T
Sbjct: 614 KKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669


>gi|325203753|gb|ADY99206.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240355]
          Length = 841

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/842 (29%), Positives = 385/842 (45%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFATLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               F A+   + L   + LGF + N           ++++Y +M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQELGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKEAADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--------------------------- 583
            RF+F+LGIRHVG   A++LA+ + + +   +                            
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 584 ----INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE-------- 614
               I+ ++A         + +P                  + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQAQAVSLPAAQYAEPQRWIARLPGFKISENKAQALWELAGKSIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKSLPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|318059490|ref|ZP_07978213.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actG]
 gi|318076490|ref|ZP_07983822.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actF]
          Length = 783

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/746 (28%), Positives = 355/746 (47%), Gaps = 63/746 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           EA      R+E   + +E+  H   YY   +P++ D+++D L RR  A+    P L    
Sbjct: 29  EAAVPADVREEHDRIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---R 85

Query: 70  DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            P+ P  K+ G+         V H    LSL+ +++ E L  +  R+ +       +   
Sbjct: 86  TPDSPTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAKEIGVPGYH--- 142

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           +  E K+DG  + + YE G+   AA RGDG  GED++  +R I  IP  L+ + +PE++E
Sbjct: 143 YLCELKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVE 202

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY    DF ALN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G 
Sbjct: 203 VRGEVYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGA 262

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                        + +   G P     +  ++  G+ S+       R ++ ++IDG+V K
Sbjct: 263 REGFTIDRLSHAYELLHEWGLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDGVVVK 322

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +DE  LQ +LG  +R+PRW  + KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G
Sbjct: 323 LDEIPLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAG 382

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    
Sbjct: 383 SEVEFATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSE 431

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P+ CP C + +         +     RC    +C AQ  ER+ +   R + +IE 
Sbjct: 432 RAFVMPAECPECGTPL-----RAMKEGDIDLRCPNARSCPAQLRERIFYLAGRKSLDIEH 486

Query: 486 LGKQQLDFFFKSEDPAF-SIRIPADIFTLQRRQQT-----------STTK---------- 523
           LG        +  +P+   +R   D+F L   +                K          
Sbjct: 487 LGYVAATALTQPIEPSDPPVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPASGEEKI 546

Query: 524 ---IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
                N  G    +  ++ ++I   +   L + +  L IRHVG   A +LA+ + S    
Sbjct: 547 VTFFANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRI 606

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                + +A              VG  IA ++ ++Y+   +   +               
Sbjct: 607 FAAEESELAET----------EGVGPTIAASLKQWYEEDWHREILRKWKAAGVRMEAAES 656

Query: 641 KNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
           +  S    +E   +V TGTL++  R  A+E +   GA V+  +S+KT  ++VGDNPGSK 
Sbjct: 657 ETDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKY 716

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +KA  L V ++ E+ F  LL++    
Sbjct: 717 DKALSLKVPVLEEDGFAILLEEGPEA 742


>gi|87308785|ref|ZP_01090924.1| DNA ligase [Blastopirellula marina DSM 3645]
 gi|87288496|gb|EAQ80391.1| DNA ligase [Blastopirellula marina DSM 3645]
          Length = 679

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/714 (31%), Positives = 372/714 (52%), Gaps = 51/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   ++E+  L  EI  HD  YY  +K  I D EYD L  R   +    P L     P+ 
Sbjct: 1   MAAVQEEIDHLRAEIRRHDRMYYVEAKTEISDLEYDQLLNRLKHLEAENPQLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  +IG +    L +V H +P LS++  +++E+L+ +  RI +   +     I + +E K
Sbjct: 58  PTQRIGDQPVEHLNQVAHRVPMLSIDNTYSLEELKAYGERIQKLLPE---EKIEWVVELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG   ++ YE G+ V    RG+G  G+D++  IR I  IP  L   ++P ++EVRGE+Y
Sbjct: 115 IDGVAASLLYEAGRLVRGVTRGNGQVGDDITHNIRTIKDIPLQLAGDDVPPVLEVRGEIY 174

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ++ ++   +N  + A G   Y N RN  +G +R L+P     R L  F HG+G    + +
Sbjct: 175 MTNDELSRINKRLAAAGEALYKNTRNVTAGSIRLLDPRICAERNLRMFTHGVGYAEGLNS 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +   + L +++  G      V     F   V++   +      LP+++DGLV KV+ F  
Sbjct: 235 ESHIDFLNELKQYGLSPTPKVEAFADFDAAVAHCETLIETLQDLPFEVDGLVLKVNRFEQ 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG   +SPRW+I++KF + +A T+L DI +Q+G+TG +TP+A LEPV + G  ++ +
Sbjct: 295 RERLGSTTKSPRWIIAYKFEKYEAITKLNDIRVQVGKTGTITPIAELEPVELAGTTVSRS 354

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN + I+ L           DIR+GD V+V++AG++IP +V + ++ER  +   F FP
Sbjct: 355 SLHNAEQIERL-----------DIRIGDVVVVEKAGKIIPHIVRVEMHERKTELPKFEFP 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CPIC + +V+D      +     RC     C AQ  ER+ +F SR+A ++EGLG + +
Sbjct: 404 TQCPICHTTLVKD------EGGVYIRCPNRETCPAQLKERIGYFASRNAMDVEGLGDKLV 457

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D     E     ++   DI+ L   +     ++      G  S  NL  SI   ++  L 
Sbjct: 458 DQLVVDE----LVKSYGDIYRLTVEELAQLERM------GKKSSENLIASIAASKDRGLA 507

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  L IRHVG  +A+ LA+++++           IA  N+          +G IIA +
Sbjct: 508 RLLNGLSIRHVGNRVAQLLARHFVTVDALLSASEEEIAAVNE----------IGPIIAAS 557

Query: 612 IVEFYQNPRNICAVEALLKEV------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +  F+ +      +E L +         P +   ++     +  K LV TGTL K  R +
Sbjct: 558 VHHFFASEFGQQTIEDLRQLGLKLTEDVPDVVASDETGGGPLTGKTLVVTGTLVKYGRDE 617

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            QE + + G   ++ +S+KTD ++ G+  GSKL KA+QLGVK+++E +F  LL 
Sbjct: 618 IQELIEKHGGKATSSVSKKTDYVVAGEKAGSKLAKARQLGVKVLSEAEFEVLLA 671


>gi|226357440|ref|YP_002787179.1| NAD-dependent DNA ligase [Deinococcus deserti VCD115]
 gi|254778147|sp|C1D1Y6|DNLJ1_DEIDV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|226319430|gb|ACO47425.1| putative NAD-dependent DNA ligase [Deinococcus deserti VCD115]
          Length = 686

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/712 (32%), Positives = 357/712 (50%), Gaps = 43/712 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +  + L Q+++ H+  YY+   P I D EYDAL R    +    P+ A    P  P   
Sbjct: 8   AERHAWLTQKVAEHNRRYYEEDAPTIPDFEYDALVRELRELEARHPEFAA---PTSPAQT 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFTLEPKIDG 136
           +GG  +    KV H  P  SL+  ++  +L  F  ++ R       + +  +T E KIDG
Sbjct: 65  VGGRPSTLFEKVRHPTPMTSLDNAFSDAELAHFDDKVARALNLPPGSRTFTYTCELKIDG 124

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I + Y  G   +AA RGDG  GE V+A I  IP IP  L   +   +EVRGEVY+SK 
Sbjct: 125 LSINLYYVDGILQWAATRGDGEVGEKVTANIEGIPGIPTQLP-GLQGELEVRGEVYMSKA 183

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQY 255
            FLA N +    GR    NPRN A+G LR+ +P +  R  L   ++ LGK   +  + Q+
Sbjct: 184 TFLAYNLKAEEEGRPLLKNPRNGAAGALRQKDPAETRRRGLEVILYALGKRDGVPVRTQW 243

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L+ +R  GF  +   R+        +Y+ EM + R  LP+D DG V K+D+  LQ+  
Sbjct: 244 DILEWLRAQGFATSEYARRVTGSEAAAAYHAEMTAQRPQLPFDADGSVVKLDDLRLQEDA 303

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+P+W +++KF    A T +  I IQ GRTG LTPVA L PV + G  +  ATLHN
Sbjct: 304 GYTSRAPKWAVAYKFPADVAQTVIEAITIQTGRTGKLTPVAELRPVLLEGTTVARATLHN 363

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED+I+GL           D+ VGD V V ++G +IP+V+ +++ +R   + P++FP+ CP
Sbjct: 364 EDFIRGL-----------DLHVGDTVRVHKSGGIIPEVLGVVLEQRPEGSTPYAFPTHCP 412

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    VR       +  A   CT   AC A+   R+++F SRD  +I+GLG++ ++   
Sbjct: 413 VCGHEAVRH------EGAAGTFCTNP-ACPAKSTLRVRYFASRDVMDIKGLGERLVEQLV 465

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG----FGDVSVTNLYDSINKRRNISLE 551
                A  +R PAD++ L   Q       E   G     G  +   L   I   +   L 
Sbjct: 466 D----AGLVRDPADLYALTAEQIEHLEMGETTTGGVRRVGRKNAEKLVAEIEASKTRELW 521

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R   SLG+ +VG   A  +A+ Y S ++  Q   + +A          R+P VG  +A+ 
Sbjct: 522 RVFRSLGLPYVGEGTATRIARVYRSLEDIRQASVDDLA----------RIPDVGRQVAEG 571

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IV+  ++      ++ L           +  V  ++     V TGTL  + R   + ++ 
Sbjct: 572 IVQGLRDADMCAYLDRLTAAGVQPTPSVDVRVGEQLAGLTFVVTGTLS-VPRDVIKLHLG 630

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           Q GA VS  +++KT  +I G++ GSKLEKA +L V +++E     LL +   
Sbjct: 631 QYGARVSGSVTKKTSYLIAGEDAGSKLEKATELKVPVLDEAGLQKLLAEKGA 682


>gi|240115079|ref|ZP_04729141.1| putative DNA ligase [Neisseria gonorrhoeae PID18]
 gi|240125172|ref|ZP_04738058.1| putative DNA ligase [Neisseria gonorrhoeae SK-92-679]
 gi|240127627|ref|ZP_04740288.1| putative DNA ligase [Neisseria gonorrhoeae SK-93-1035]
          Length = 823

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/845 (29%), Positives = 389/845 (46%), Gaps = 171/845 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N+PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-K 245
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + +  +
Sbjct: 179 RGEVLMLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238

Query: 246 TSEIFAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              + A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG V 
Sbjct: 239 QGGLIAEEHIQELAYFQALGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF- 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYR 517

Query: 512 ----TLQRRQQT------------------STTKIENILGFGD--VSVTNLYDSINKRRN 547
               TLQ+ ++T                    +K     G         N+   I   + 
Sbjct: 518 IDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKT 577

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------ 583
             L RF+F+LGIRHVG   A++LA+ + + +   +                         
Sbjct: 578 PELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFA 637

Query: 584 -------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE----- 614
                  I+ ++A         + +P                  + +  AQA+ E     
Sbjct: 638 QAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQS 697

Query: 615 ----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLV 653
                           +    +N   +E L    +      E    S      +  K  V
Sbjct: 698 IEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFV 757

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E +
Sbjct: 758 LTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAE 817

Query: 714 FLFLL 718
            L LL
Sbjct: 818 LLTLL 822


>gi|296285034|ref|ZP_06863032.1| DNA ligase [Citromicrobium bathyomarinum JL354]
          Length = 733

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/756 (36%), Positives = 402/756 (53%), Gaps = 74/756 (9%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E LS  +A  EL  L + I  H+  Y+    P I D EYDAL RR +A+  AFPDL R  
Sbjct: 9   EPLSEAEAANELMRLARTIRKHNRLYHAEDAPEITDQEYDALVRRNEALEAAFPDLVR-- 66

Query: 70  DPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P   +G E+  S L KVTH++  +SL+  +N E++ +++ R+ RF   + D  I F
Sbjct: 67  -PDSPSKGVGHEVAGSPLSKVTHAVRMMSLDNAFNGEEVGEWVARVRRFLDLEVDTPIAF 125

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T E KIDG   ++RYEKG+ V AA RGDG  GEDV+A +  I  IP  L+ + P++ EVR
Sbjct: 126 TAEDKIDGLSCSLRYEKGQLVRAATRGDGQVGEDVTANVAHIADIPAQLTGDAPDVFEVR 185

Query: 189 GEVYISKNDFLALN---------------DEMIAVGRKPYANPRNAASGILRRLNPT-DI 232
           GEVY+ +  F  LN               +E      + +ANPRNAA+G LR+ + +   
Sbjct: 186 GEVYMERAAFADLNTRLMDEARAAASEKGEEFDPAKARQFANPRNAAAGSLRQKDASVTA 245

Query: 233 TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR 292
            R L F+ HG G+ S++  + Q ++++ +   G PV+    +      ++ +Y  + S R
Sbjct: 246 KRPLRFWAHGWGEASQVPGETQTDVIRAIEAFGLPVSPQFTRVEGLDALLDHYETIASAR 305

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
             LPY+IDG+VYKVD    Q++LG  A++PRW ++HKF  ++A T L  IDIQ+GRTG L
Sbjct: 306 PDLPYEIDGVVYKVDRLDWQERLGFVAKAPRWALAHKFPAERAETTLEAIDIQVGRTGKL 365

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPV RL PV +GG  +TN TLHN D I  L            +RVGDRVL++RAG+VIP+
Sbjct: 366 TPVGRLAPVLVGGVTVTNVTLHNRDEIARL-----------GLRVGDRVLIQRAGDVIPQ 414

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
           VV+ +        + F FP  CP C S  V + +          RCTGGL C AQ+LER+
Sbjct: 415 VVENLTP--DAQRERFEFPETCPECGSEAVAEEDE------VDVRCTGGLICPAQRLERM 466

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532
           KHFVSR A +IEG+G++ +  F +       +  PADIF L++R+         + G+ D
Sbjct: 467 KHFVSRGALDIEGMGEKTIAEFLER----GWLESPADIFRLRKRRDEILA----LEGWQD 518

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII---- 588
            SV NL  +I  +R     R +F LGIRHVGA  AR L K     +    +         
Sbjct: 519 KSVDNLLAAIEAKRAPDAARLLFGLGIRHVGAVTARDLLKGLGDIRKLPGKAAEFHRYRI 578

Query: 589 --------------AHNNDDWLSLIRV--PLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
                         A   D    +  V    +G  +  A+ +F+    N    + L    
Sbjct: 579 ENPRGEDEKVSPFNARMLDAVRRIYEVRADGIGTAVGHALADFFHEEHNRQVWDDL-IGA 637

Query: 633 SPSIGR------HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
            P  G         + V S +  K +VFTG L+ + R +A+    +LGA  +  +S KTD
Sbjct: 638 EPGAGEVDPPVYEVETVESPVAGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTD 697

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +++ G   GSKL+KA++LG+++++E  +  ++    
Sbjct: 698 LLVAGPGAGSKLKKAEELGIEVIDEAGWTEIVAAAG 733


>gi|323697702|ref|ZP_08109614.1| DNA ligase, NAD-dependent [Desulfovibrio sp. ND132]
 gi|323457634|gb|EGB13499.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans ND132]
          Length = 684

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/718 (33%), Positives = 388/718 (54%), Gaps = 57/718 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E   + ++ L Q+I +H+  YY    P I D E+D L R   A+    P+L   +DP
Sbjct: 1   MVPESVAERVAELRQKIDHHNYRYYVLDDPEISDQEFDVLFRELAALEAEHPEL---DDP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GGE         H++   SL+   +++    F  R+ +   + D   + +  +
Sbjct: 58  NSPTRRVGGEPASGFTPYEHALRLYSLDNAMDLDAWYAFHERVAKGVGRAD---VAYWAD 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  + + YE G++V AA RGDG  GEDV+A +R +  +P  L   ++PE++EVRGE
Sbjct: 115 PKMDGLALEVIYENGRYVRAATRGDGLVGEDVTANMRTVMNLPLSLHGDDVPELLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           V ++  DF ALN      G K +ANPRNAA+G +R+L+P     R L F  +G+G+    
Sbjct: 175 VVMANRDFAALNARQEEKGEKVFANPRNAAAGTIRQLDPKVAASRPLRFMAYGVGRVEWP 234

Query: 250 FAK----GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q  +++ +R LGF +   V+   +   +  Y+ ++ +IR+TLP++IDG+V K
Sbjct: 235 GRASDWATQQALMEGLRDLGFAIPPDVKLCASAKAVADYFQQLGAIRATLPFEIDGMVAK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++  +Q+ LG  AR+PRW ++ KF   Q  TRL  I +Q+GRTG+LTPVA LEPV + G
Sbjct: 295 VNDREMQEALGYTARAPRWALALKFPAHQTRTRLNAIRVQVGRTGVLTPVAELEPVELAG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHN+ YI             RD+RVGD VL++RAG+VIP+V+   + +R  +A
Sbjct: 355 VVVSNATLHNKGYI-----------AERDLRVGDTVLIQRAGDVIPQVLSADLEQRPENA 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF FP  CP+C+S  V     + G+ V    CT   AC A+ ++RL HFVS+   ++EG
Sbjct: 404 EPFVFPMVCPVCESPAV-----EDGERVV---CTNP-ACPAKTVQRLIHFVSKAGMDMEG 454

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +GKQ +    +       +   AD+FTL++             G GD S  N   +I K 
Sbjct: 455 VGKQWVRKLAED----GVLNSAADLFTLKKTDLLKYG------GMGDKSAENFLKAIEKA 504

Query: 546 R-NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +    L R +  LGIRH+G + AR+LA  + +         + +            +  +
Sbjct: 505 KAEAPLWRLVAGLGIRHIGEQAARTLAARFKNLDELFGATLDDLTG----------LDGI 554

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKI 661
           GD++A+++++F  +  N   ++   +      G     E +    +  K  +FTGTL  I
Sbjct: 555 GDVMAESVLDFRVDAANREMIDRFRELGVWPEGGAPAEEPSDELPLAGKVFIFTGTLP-I 613

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R +A   V   G +    +S+K D ++ G+  GSK+ KA++LG+++++ + F  LL+
Sbjct: 614 SRDEAWAMVEARGGIPVKSISKKVDYVVAGEKAGSKIAKAEKLGLEVIDFDAFKALLE 671


>gi|94988258|ref|YP_596359.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS9429]
 gi|94992132|ref|YP_600231.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS2096]
 gi|122986939|sp|Q1JCM1|DNLJ_STRPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123080420|sp|Q1JMJ7|DNLJ_STRPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94541766|gb|ABF31815.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS9429]
 gi|94545640|gb|ABF35687.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS2096]
          Length = 652

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/702 (30%), Positives = 359/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVKA-----EFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+     G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q E
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLY--QEASPTARNQQNE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLAELAGLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F 
Sbjct: 398 CGSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F 
Sbjct: 450 ---LAGFVHDVADIYQLTK------ENFMQLDGIKEKSADKLLAAIEASKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G++++R + + Y             IA          R+  +G  IAQ++ +++
Sbjct: 501 LGIRHIGSKVSRLILEVYGDISALLTAKEEEIA----------RIDGLGSTIAQSLTQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +       V+      V+      + N  + +    +V TG L ++ R++A++ +  LGA
Sbjct: 551 EQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 611 KVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652


>gi|225022751|ref|ZP_03711943.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944472|gb|EEG25681.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 699

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/718 (29%), Positives = 351/718 (48%), Gaps = 48/718 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P E    ++  +E   L  E++ H + YY    P I D+E+DAL ++ +A+    P+LA
Sbjct: 4   TPAETTDTQEIHQEWQRLASEVTRHRELYYNQ-TPEITDAEFDALFKKLEALEADHPELA 62

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  ++G  +  S   V H    LSL+ +++ E+L +++ R+         ++ 
Sbjct: 63  ---TPDSPTQQVGAPVESSFENVEHLERMLSLDNVFDEEELDEWLQRV---------DAP 110

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIP 182
            +  E KIDG  + + Y  G    AA RGDG  GEDV+   + I  +P +L+      IP
Sbjct: 111 EYVTELKIDGLSLALVYRNGVLERAATRGDGRIGEDVTENAKVIQDVPHMLTATEEFPIP 170

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241
            ++EVRGEV+I+  DF  +N++    G KP+ANPRNAA+G LR+ +   + R  L    H
Sbjct: 171 NLLEVRGEVFIAVEDFAEVNEQRQKDGGKPFANPRNAAAGSLRQKDVEAVRRRKLRMLCH 230

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G+G T       QY   + +   G PV++  +   T   +       +  R     ++DG
Sbjct: 231 GIGATEGFTPASQYHAYEALAAWGLPVSDYTKLVKTIDEVHKQVAYWEKHRGDAVCEMDG 290

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           LV KVD  + Q+QLG  +R+PRW I++K+  ++  T+LLDI   +GRTG +TP A +EPV
Sbjct: 291 LVVKVDSIAEQRQLGATSRAPRWAIAYKYPPEEVQTKLLDIHEGVGRTGRVTPYAVMEPV 350

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           ++ G+++  ATLHN+  +K            + + +GD V++++AGE+IP+V+  +V  R
Sbjct: 351 SVAGSIVELATLHNQTEVKR-----------KGVLIGDTVVIRKAGEIIPEVLGPVVERR 399

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + + FP  CP C +++         +     RC     C AQ   R+K+   R  F
Sbjct: 400 DGTEREYVFPENCPSCGTKL-----APQREGDVDWRCPNSQKCPAQVAARIKYLADRGRF 454

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IE LG++  +   +S      +     +F L       T+      G  + +   L  +
Sbjct: 455 DIEALGEKAAEDLVRS----GVLVDEGGLFNLTEADLLRTSIYTTKKGTLNATGKKLLKN 510

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   ++  L R + SL IR VG   +R+LA  Y S           IA            
Sbjct: 511 LETAKHTDLWRVMASLSIRMVGNTASRALASRYRSLDALRAATVEDIAET---------- 560

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG ++AQ+  ++++   +   V+   K                +    +V TG+L+  
Sbjct: 561 EGVGLVMAQSFKDWFEVQWHCDIVDQWAKSGVTMEDDASDQPEQVLAGLTVVVTGSLEGF 620

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R  A+E +   G   S  +S+KTD ++VG+  GSK +KA+ LG+ I++E  F+ LL 
Sbjct: 621 TRDSAKEAIISRGGKASGSVSKKTDYVVVGEKAGSKEQKARDLGLTILDEAGFVQLLA 678


>gi|71903217|ref|YP_280020.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS6180]
 gi|123761437|sp|Q48UE1|DNLJ_STRPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71802312|gb|AAX71665.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS6180]
          Length = 652

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/702 (30%), Positives = 359/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVKA-----EFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+     G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q E
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLY--QEASPTARNQQNE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN   +  ++   I ++   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLAELADLGFSVNPYYQLTSSMDEIWNFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F 
Sbjct: 398 CGSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F 
Sbjct: 450 ---LAGFVHDVADIYQLTK------EDFMQLDGIKEKSADKLLAAIEASKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G++++R + + Y             IA          R+  +G  IAQ++ +++
Sbjct: 501 LGIRHIGSKVSRLILEVYGDISALLTAKEEEIA----------RIDGLGSTIAQSLTQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +       V+      V+      + N  + +    +V TG L ++ R++A++ +  LGA
Sbjct: 551 EQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 611 KVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652


>gi|326776439|ref|ZP_08235704.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
 gi|326656772|gb|EGE41618.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
          Length = 743

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/755 (28%), Positives = 358/755 (47%), Gaps = 61/755 (8%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M     +  E+      R++ + L ++I  H   YY   +P++ D+++D   R  +A+  
Sbjct: 1   MAGEDRVEQESSVPADVREKHALLAEQIEEHRFRYYVKDQPVVSDADFDRQLRSLEALEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P L     P+ P  K+ G        V H    LSL+  ++ E+L  +  R+ +    
Sbjct: 61  EHPSL---RTPDSPTQKVAGPYRTEFTSVEHRERMLSLDNAFDDEELAAWADRVAKDVGT 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
            D +   F  E K+DG  + + YE G+   AA RGDG +GED++  +R I  IP  L   
Sbjct: 118 PDHH---FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGE 174

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           +IP ++E+RGEV+    DF  LN  ++A   KP+ANPRNAA+G LR+ +P    TR L+ 
Sbjct: 175 DIPALVEIRGEVFFPMEDFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTATRPLHM 234

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            VHG+G    +           +   G P     +  ++  G+  +       R ++ ++
Sbjct: 235 VVHGIGAHEGLSIDRLSAAYDLLHAWGLPTARHNKVVDSLAGVREFIAHYGENRHSVEHE 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V K+DE  LQ +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++
Sbjct: 295 IDGVVVKLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQV 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ +  ATLHN++ +K            + + +GD V++++AGEVIP+++  +V
Sbjct: 355 EPVEVAGSEVEFATLHNQNVVKA-----------KGVLIGDTVVIRKAGEVIPEILGPVV 403

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R    + F  P+ CP C + +         +     RC     C AQ  ER+ +   R
Sbjct: 404 DLRDGTEKAFEMPTHCPECGTEL-----RPMKEADIDLRCPNARTCPAQLRERVFYLAGR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSI-RIPADIFTLQRRQQ------------------- 518
            + +I+  G        +  +PA  + +  +D+F+L   Q                    
Sbjct: 459 KSLDIDHFGYVAAAALTRPLEPAEPVLKDESDLFSLTVEQLLPIRAYVLDQDSGLPKRDP 518

Query: 519 -TSTTK----IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            T   K      N  G    +   + + I   ++  L R +  L IRHVG   A+ LA+ 
Sbjct: 519 KTGEEKIATVFANQQGEPKKNAVAMLEGIAAAKDAPLARVLTGLSIRHVGPVAAQELARQ 578

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +            +      L     VG  IA ++ +++    +   V    +   
Sbjct: 579 FRSIERI----------DEATEEELAAADGVGPTIAASVKQWFAEDWHREIVRKWREAGV 628

Query: 634 PSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   E      +E   +V TGTL    R  A+E +  LGA V+  +S+KT  ++VG
Sbjct: 629 RMADEGSDEDEGPRPLEGLTVVVTGTLAGHTRDGAKEALQALGAKVAGSVSKKTAFVVVG 688

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           DNPGSK +KA QL V +++E+ F  LL+Q     +
Sbjct: 689 DNPGSKYDKAMQLKVPVLDEDGFAILLEQGPERAK 723


>gi|88803633|ref|ZP_01119157.1| putative DNA ligase [Polaribacter irgensii 23-P]
 gi|88780366|gb|EAR11547.1| putative DNA ligase [Polaribacter irgensii 23-P]
          Length = 665

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/706 (31%), Positives = 360/706 (50%), Gaps = 48/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L  E++ H+  YY     +I D ++D   ++ + +    P L    D N P  
Sbjct: 3   AAQTIQLLRDELNTHNYNYYVLDNGMISDFDFDVKLKKLEQLEKENPLLF---DANSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG +  +   V H     SL+  ++ EDL  +  R+ +         + +T E K DG
Sbjct: 60  RVGGAVTKNFNTVVHKNRMYSLDNSYSKEDLLDWEKRVEKVLGSSA---LEYTCELKFDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I + YE G+FV A  RGDG  G++V+  I+ I +IP  LS +     E+RGE+ +  +
Sbjct: 117 ASINLTYENGQFVKAVTRGDGFQGDEVTNNIKTIRSIPLSLSADFVHNFEMRGEIILPLD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F ++N E IA G + Y NPRN ASG L+  +  ++  R L+  ++ +  TSE   K  +
Sbjct: 177 GFNSMNAERIANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQIV-TSERKYKTHF 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+  R +GF V   ++   +   +  + +     R  LPY+ DG+V KV++   Q++L
Sbjct: 236 ESLENARRVGFKVPKAIKLVKSIDAVFDFVSYWDEKRHDLPYETDGIVIKVNDLQQQEEL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++PRW I++KF   Q +T L  I  Q+GRTG +TPVA L PV + G  +  A+LHN
Sbjct: 296 GYTAKAPRWAIAYKFKATQVTTILNAISYQVGRTGAITPVANLNPVQLAGTTVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           DIR  D V V++ GE+IPK+  +    R  +++P  + + CP
Sbjct: 356 ADQIEKL-----------DIREKDTVFVEKGGEIIPKITAVDFTRRLENSEPTRYATNCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR       +  A H C     C+ Q   R++HF+SR A +IEGLG + +D   
Sbjct: 405 ECNTLLVRS------EGDAKHYCPNEFGCAPQITGRIQHFISRKAMDIEGLGGETVDLLR 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K       I+  AD++ L   Q     ++       + S  N+   I K + I  E+ +F
Sbjct: 459 KEGC----IQNYADLYDLTVEQVIPLERMA------EKSAQNMIAGIEKSKEIPFEKVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ LAKY+ S  N              ++  LI V  +GD IAQ+I++F
Sbjct: 509 ALGIRFVGETVAKKLAKYFKSIDNLMHA----------EFEVLISVDEIGDRIAQSIIDF 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +  NI  +  L           E   +    ++ +  V +G   ++ R++ ++ +   
Sbjct: 559 SSDEGNIQLINRLKSYGVQLEVSAEILENQTELLKGQVFVVSGVFHQLSRNELKKAIEDN 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G  VSA +S+KT+ I+ GDN G SKL KAQ LG++I++E+  +  +
Sbjct: 619 GGKVSASISKKTNYIVAGDNMGPSKLTKAQDLGIEIISEQNLIDKI 664


>gi|59800688|ref|YP_207400.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090]
 gi|75356380|sp|Q5F9Z9|DNLJ_NEIG1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|59717583|gb|AAW88988.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090]
          Length = 823

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/845 (29%), Positives = 389/845 (46%), Gaps = 171/845 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N+PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-K 245
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + +  +
Sbjct: 179 RGEVLMLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238

Query: 246 TSEIFAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              + A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG V 
Sbjct: 239 QGGLIAEEHIQELAYFQALGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF- 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYR 517

Query: 512 ----TLQRRQQT------------------STTKIENILGFGD--VSVTNLYDSINKRRN 547
               TLQ+ ++T                    +K     G         N+   I   + 
Sbjct: 518 IDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKT 577

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------ 583
             L RF+F+LGIRHVG   A++LA+ + + +   +                         
Sbjct: 578 PELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFA 637

Query: 584 -------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE----- 614
                  I+ ++A         + +P                  + +  AQA+ E     
Sbjct: 638 QAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQS 697

Query: 615 ----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLV 653
                           +    +N   +E L    +      E    S      +  K  V
Sbjct: 698 IEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFV 757

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E +
Sbjct: 758 LTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGETAGSKLEKANALGVSVLSEAE 817

Query: 714 FLFLL 718
            L LL
Sbjct: 818 LLTLL 822


>gi|311113170|ref|YP_003984392.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931]
 gi|310944664|gb|ADP40958.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931]
          Length = 740

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/741 (30%), Positives = 370/741 (49%), Gaps = 57/741 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  R E + L   I      YYQ   P + D+EYD L RR + I   +P L  +   + P
Sbjct: 27  DTIRAEYAELTDTIRTARHDYYQEDAPTLSDAEYDRLYRRLEQIEAQYPALIAN---DSP 83

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE++ +   VTH +   SLE ++++E+LR ++T+     +     +  +  E KI
Sbjct: 84  TQEVGGEVSEAFSPVTHLVRMYSLEDVFSLEELRAWLTKAEENTRLLTGTAPQWLTELKI 143

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  + + Y  G  V AA RGDG +GEDV+  +R I +IP+ L   N P  +EVRGEV+I
Sbjct: 144 DGLAVNLLYRNGVLVRAATRGDGTTGEDVTHNVRTIASIPQKLAGENHPAELEVRGEVFI 203

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           S  DF  LN++M++ G+ P+ANPRNAA+G LR+ +      R L+ +VHG+G  + +   
Sbjct: 204 SSADFKKLNEKMVSEGKNPFANPRNAAAGSLRQKDSAVTAERPLSMYVHGVGSRTGLDVN 263

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            QY+  +++   G P +   +   +   I+ Y  E    R +L ++IDG+V KV++F  Q
Sbjct: 264 SQYQTYEQLAAWGLPTSPYSKLFTSVDDILRYIAEYGEKRHSLVHEIDGIVIKVNDFVAQ 323

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            QLG  +R PRW +++K+  ++ +T+LLDI + +GRTG +TP   +EPV + G+ +  AT
Sbjct: 324 TQLGYTSRVPRWAVAYKYPPEEVNTKLLDIRVDVGRTGRVTPYGVMEPVLVSGSTVERAT 383

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D +K            + + +GD V++++AG+VIP++V  +V  R+   + F  P+
Sbjct: 384 LHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEIVGPVVALRNGHEREFVMPT 432

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +         +     RC    +C AQ  ER+ +  SR AF+IE LG +   
Sbjct: 433 ECPSCGTTL-----APGKEGDVDMRCPNYRSCPAQLTERIYYAASRGAFDIEALGFEAAK 487

Query: 493 FFFKS-EDPAFSIRIPADIFTLQRRQQ-------------TSTTKIENILGFG------- 531
                 E     +   A +F L                    T K E +  F        
Sbjct: 488 ALTAPAEPEQPPLTSEAFLFDLTAEDLRDVKIRREKKVKGVGTGKFELVPYFYTKPTKAK 547

Query: 532 -----DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                  +  NL+  + K ++  L R + +L IRHVG   AR+LA  + S    AQ   +
Sbjct: 548 PDPVPTKNTQNLFVELEKAKSQPLWRVLVALSIRHVGPTAARALATEFGSMDAIAQADRD 607

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
            +A           V  VG +IA +I+E++    +   +              + ++   
Sbjct: 608 RLAA----------VDGVGGVIADSIIEWFATDWHREVLARWADAGVRMEDERDASIERT 657

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E   +V TGTL    R  A+E +   G   S  +S+KT  ++ G + GSKL+KA+ LG+
Sbjct: 658 LEGVTVVVTGTLVNYSRDSAKEAIIVRGGRASGSVSKKTHFVVAGASAGSKLDKAEALGI 717

Query: 707 KIMNEEQFLFLLQQYNTTLRI 727
            +++E+ F  LL      L  
Sbjct: 718 PVLDEDGFTKLLAHGPDALAP 738


>gi|222094064|ref|YP_002528121.1| nad-dependent DNA ligase liga [Bacillus cereus Q1]
 gi|221238119|gb|ACM10829.1| DNA ligase, NAD-dependent [Bacillus cereus Q1]
          Length = 615

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/657 (35%), Positives = 365/657 (55%), Gaps = 49/657 (7%)

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ + 
Sbjct: 2   SEDSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYI 58

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L LN    +E RG
Sbjct: 59  CELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARG 116

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E
Sbjct: 117 EAYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEE 176

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+
Sbjct: 177 KTILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDD 236

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++
Sbjct: 237 VALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIV 296

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++ ++R  + + +
Sbjct: 297 RRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEY 345

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG+
Sbjct: 346 HMPTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGE 398

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   F+    A  IR  AD+++L + Q     +      FG+ S TNL  +I   +  
Sbjct: 399 RVITQLFE----ADYIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKEN 448

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SLER +F LGIRHVGA+ AR+ A+++ +     +     +            +  +G+ +
Sbjct: 449 SLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKA----------INEIGEKM 498

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQR 663
           AQ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R
Sbjct: 499 AQSVVAYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGR 558

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 559 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 615


>gi|182435814|ref|YP_001823533.1| NAD-dependent DNA ligase LigA [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|254778153|sp|B1VZW1|DNLJ2_STRGG RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|178464330|dbj|BAG18850.1| putative DNA ligase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 743

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/755 (28%), Positives = 358/755 (47%), Gaps = 61/755 (8%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M     +  E+      R++ + L ++I  H   YY   +P++ D+++D   R  +A+  
Sbjct: 1   MAGEDRVEQESSVPADVREKHALLAEQIEEHRFRYYVKDQPVVSDADFDRQLRSLEALEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P L     P+ P  K+ G        V H    LSL+  ++ E+L  +  R+ +    
Sbjct: 61  EHPSL---RTPDSPTQKVAGPYRTEFTSVEHRERMLSLDNAFDDEELAAWADRVAKDVGT 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
            D +   F  E K+DG  + + YE G+   AA RGDG +GED++  +R I  IP  L   
Sbjct: 118 PDHH---FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGE 174

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           +IP ++E+RGEV+    DF  LN  ++A   KP+ANPRNAA+G LR+ +P    TR L+ 
Sbjct: 175 DIPALVEIRGEVFFPMEDFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTATRPLHM 234

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            VHG+G    +           +   G P     +  ++  G+  +       R ++ ++
Sbjct: 235 VVHGIGAHEGLSIDRLSAAYDLLHTWGLPTARHNKVVDSLAGVREFIAHYGENRHSVEHE 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V K+DE  LQ +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++
Sbjct: 295 IDGVVVKLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQV 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ +  ATLHN++ +K            + + +GD V++++AGEVIP+++  +V
Sbjct: 355 EPVEVAGSEVEFATLHNQNVVKA-----------KGVLIGDTVVIRKAGEVIPEILGPVV 403

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R    + F  P+ CP C + +         +     RC     C AQ  ER+ +   R
Sbjct: 404 DLRDGTEKAFEMPTHCPECGTEL-----RPMKEADIDLRCPNARTCPAQLRERVFYLAGR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSI-RIPADIFTLQRRQQ------------------- 518
            + +I+  G        +  +PA  + +  +D+F+L   Q                    
Sbjct: 459 KSLDIDHFGYVAAAALTRPLEPAEPVLKDESDLFSLTVEQLLPIRAYVLDQDSGLPKRDP 518

Query: 519 -TSTTK----IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            T   K      N  G    +   + + I   ++  L R +  L IRHVG   A+ LA+ 
Sbjct: 519 KTGEEKIATVFANQQGEPKKNAVAMLEGIAAAKDAPLARVLTGLSIRHVGPVAAQELARQ 578

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +            +      L     VG  IA ++ +++    +   V    +   
Sbjct: 579 FRSIERI----------DEATEEELAAADGVGPTIAASVKQWFAEDWHREIVRKWREAGV 628

Query: 634 PSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   E      +E   +V TGTL    R  A+E +  LGA V+  +S+KT  ++VG
Sbjct: 629 RMADEGSDEDEGPRPLEGLTVVVTGTLAGHTRDGAKEALQALGAKVAGSVSKKTAFVVVG 688

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           DNPGSK +KA QL V +++E+ F  LL+Q     +
Sbjct: 689 DNPGSKYDKAMQLKVPVLDEDGFAILLEQGPERAK 723


>gi|240015985|ref|ZP_04722525.1| putative DNA ligase [Neisseria gonorrhoeae FA6140]
 gi|240112339|ref|ZP_04726829.1| putative DNA ligase [Neisseria gonorrhoeae MS11]
          Length = 823

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/845 (29%), Positives = 389/845 (46%), Gaps = 171/845 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG+V 
Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF- 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYR 517

Query: 512 ----TLQRRQQT------------------STTKIENILGFGD--VSVTNLYDSINKRRN 547
               TLQ+ ++T                    +K     G         N+   I   + 
Sbjct: 518 IDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKT 577

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------ 583
             L RF+F+LGIRHVG   A++LA+ + + +   +                         
Sbjct: 578 PELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFA 637

Query: 584 -------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE----- 614
                  I+ ++A         + +P                  + +  AQA+ E     
Sbjct: 638 QAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQS 697

Query: 615 ----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLV 653
                           +    +N   +E L    +      E    S      +  K  V
Sbjct: 698 IEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFV 757

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E +
Sbjct: 758 LTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAE 817

Query: 714 FLFLL 718
            L LL
Sbjct: 818 LLTLL 822


>gi|325690880|gb|EGD32881.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK115]
          Length = 652

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/702 (32%), Positives = 362/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q E
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQADSQEE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +P   PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEPLEIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELGNFKEKSANKLYTAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|317507336|ref|ZP_07965075.1| DNA ligase [Segniliparus rugosus ATCC BAA-974]
 gi|316254381|gb|EFV13712.1| DNA ligase [Segniliparus rugosus ATCC BAA-974]
          Length = 712

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/714 (31%), Positives = 345/714 (48%), Gaps = 48/714 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++    L  ++  H   YY    P + D+E+DAL R   A+    P+LA     + P   
Sbjct: 12  QERWLRLADQVKEHQFRYYVLDSPTVTDAEFDALLRELQALEDEHPELA---SASSPTKL 68

Query: 78  IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +GG        +V H  P LSL+ ++N ED   +  R+     +  +  I F  E KIDG
Sbjct: 69  VGGAGFTTDFAEVGHVEPMLSLDNVFNEEDFLAWAERVA----QGAEQPINFDCELKIDG 124

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVY 192
             I++ YE+G+   AA RGDG +GEDV+  +R I  +P  L        PE++EVRGEV+
Sbjct: 125 LGISLVYERGRLARAATRGDGRTGEDVTLNVRTIADVPHELSLAAGEEPPELLEVRGEVF 184

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF ALN  ++A G+ P+ANPRN+A+G LR+ NP     R L    HGLG T     
Sbjct: 185 FKLKDFEALNASLVAEGKAPFANPRNSAAGSLRQKNPAITAKRKLAMLCHGLGATGGWSP 244

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             + E  QK++  G PV+       +   ++ +       R  + YDIDGLV KV+E SL
Sbjct: 245 ATRSEAYQKLKDWGLPVSPYNTTLASPEAVLGHIRHWGERRHEVEYDIDGLVVKVEEMSL 304

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             +LG  +R+PRW I++K+  ++  T+LLDI + +GRTG +TP A +EPV + G+ +  A
Sbjct: 305 YARLGNTSRAPRWAIAYKYPPQEVQTKLLDIRVNVGRTGRVTPFAFMEPVLVAGSTVGLA 364

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +             + + +GD V++++AG+VIP+V+  +V  R    + F  P
Sbjct: 365 TLHNASEVAR-----------KGVLIGDTVVLRKAGDVIPEVLGPVVALRDGSEREFVMP 413

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC     C AQ  ER+ H   R AF+IE LG +  
Sbjct: 414 AQCPECGAEL-----APAKEADVDIRCPNARTCPAQLRERVFHVAGRGAFDIEALGYEAA 468

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG----DVSVTNLYDSINKRRN 547
               K      +I    D+F L   +   T    N  G        +   L  ++ + ++
Sbjct: 469 VDLLKHN----AIEDEGDLFDLDEERLLKTELFVNTSGKNAGQLSANGRKLLQNLEQAKS 524

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R + +L IRHVG   AR+LA  + S           +A           V  VG  
Sbjct: 525 RDLWRVLVALSIRHVGPTAARALATRFGSVDAVFGADQEALA----------EVDGVGPT 574

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA ++ E+++   +   VE   +    ++    +     +    +V TG+L    R   Q
Sbjct: 575 IAASVREWFEVDWHRSIVER-WRAAGVTMAEDREQSPQTLAGLTIVVTGSLDGFTRESVQ 633

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           E +   G   S  +S+KT  ++ G+  GSK +KA+QLGV I++E  F+ LL   
Sbjct: 634 EAIIAHGGKASGSVSKKTSYVVAGEGGGSKRDKAEQLGVPIIDEAAFVQLLANG 687


>gi|94994051|ref|YP_602149.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10750]
 gi|123257616|sp|Q1J7G9|DNLJ_STRPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94547559|gb|ABF37605.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10750]
          Length = 652

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/702 (30%), Positives = 358/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVKA-----EFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+     G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q E
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLY--QEASPTARNQQNE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F 
Sbjct: 398 CGSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F 
Sbjct: 450 ---LAGFVHDVADIYQLTK------ENFMQLDGIKEKSADKLLAAIEASKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G++++R + + Y             IA          R+  +G  IAQ++ +++
Sbjct: 501 LGIRHIGSKVSRLILEVYGDISALLTAKEEEIA----------RIDGLGSTIAQSLTQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +       V+      V+      + N  + +    +V TG L ++ R++A++ +  LGA
Sbjct: 551 EQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 611 KVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652


>gi|229496499|ref|ZP_04390213.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406]
 gi|229316396|gb|EEN82315.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406]
          Length = 671

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/714 (31%), Positives = 369/714 (51%), Gaps = 54/714 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             + +  L  EI  H+  YY  S P+I D E+D L ++   +    P+L     P  P  
Sbjct: 4   VEERIEQLRSEIEQHNYRYYVLSTPLISDVEFDRLMQQLIDLEAQHPELI---TPTSPTQ 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G + N S   V HS+P LSL   +N +++R+F  R++       + S+    E K DG
Sbjct: 61  RVGSDRNPSFVSVRHSVPMLSLSNTYNYDEVREFWHRLH-----SGNGSLTLDCELKFDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195
             I + Y  G+   A  RGDG  G+DV+  IR I +IP R+L  NIP  +EVRGE+ +  
Sbjct: 116 LSIAVVYLNGELSQAITRGDGIEGDDVTNNIRTIRSIPLRLLGENIPPRVEVRGEILLPY 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
           ++F  +N + +A G+ P+ANPRNAASG L++L+ + ++ R L+ F + L   + +     
Sbjct: 176 DEFERINSQRLAEGKDPFANPRNAASGTLKQLDTSVVSERRLDAFFYYL-LVNGLDIDSH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L   +  G  V++   Q +T   I ++ +   + R +LP+  DG+V KVD  +LQ+ 
Sbjct: 235 AERLHLAKSWGIKVSDYSAQCSTLEDIYAFIDHWDTARRSLPFATDGIVLKVDSLALQQT 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  A+ PRW I++K+  ++AST+L+D+  Q+GRTGI+TPVA L P+ I G ++  ATLH
Sbjct: 295 IGFTAKGPRWAIAYKYQPERASTQLIDVSYQVGRTGIITPVANLAPILISGTVVRRATLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D+I  L           D+   D V V++ GE+IPK+  +  + R  DA P  FPS C
Sbjct: 355 NADFILSL-----------DLHQKDYVYVEKGGEIIPKIAGVDKSLRQSDALPIVFPSTC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +++            + C   L C  Q    ++H+  R A +I  +G + +D  
Sbjct: 404 PDCGTTLIKAEGE------VGYFCPNKLGCPMQIKGSIEHYTQRKAADIT-IGPETIDAL 456

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           +        ++   D++ L      S        GF + +  NL  SI + ++      +
Sbjct: 457 YSR----GFVKSICDLYRLTADDILSLD------GFKECATGNLLGSIEQSKSRPFPAIL 506

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIR+VG  +A+ L + + S +   +     +            +  +G+ IA++IV 
Sbjct: 507 FGLGIRYVGENVAKILTRTFNSIETLMEASQEELQ----------TIDGIGERIAESIVS 556

Query: 615 FYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F+ + RN   + AL +      +P      + +S  +E K +V +GT  +  R +  + +
Sbjct: 557 FFADERNQKIIAALKEFGVTLSNPVEEGISEAISRPLEGKSIVISGTFSQHTRDEYTQII 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            QLG    + +S+KT  I+ G++ G SK EKA  LG+ +++E++FL L+   NT
Sbjct: 617 EQLGGKKVSSISQKTSFILAGEDMGPSKREKALSLGIPLLSEDEFLALVDLPNT 670


>gi|261401085|ref|ZP_05987210.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970]
 gi|269208977|gb|EEZ75432.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970]
          Length = 827

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/853 (29%), Positives = 395/853 (46%), Gaps = 168/853 (19%)

Query: 7   IPIEALS-IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +P E LS +    + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L
Sbjct: 1   MPSENLSAMNPTAQRIHELTDLLNRYAYEYYTLDAPSVPDAEYDRLFRELEALELNHPEL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYR 116
                P+ P  ++GGE      +V H +P LSL   ++ +         ++  F  R+  
Sbjct: 61  KL---PDSPTQRVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRN 117

Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
                      + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  
Sbjct: 118 GLN---GEQPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLR 174

Query: 177 L-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-R 234
           L   N PE+IEVRGEV + K DF ALN       +KP+ANPRNAA+G LR+L+      R
Sbjct: 175 LHGENTPELIEVRGEVLMLKADFAALNKRQADNNQKPFANPRNAAAGSLRQLDSRITAQR 234

Query: 235 YLNFFVHGLGKTSEIFA-KGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIR 292
            L+FF + + +    FA +   + L   + LGF + +G          ++++Y +M+  R
Sbjct: 235 KLHFFPYSIARQQGGFAAEEHIQELAYFQKLGFSLPDGNFGCFKNIDEVLAFYEQMQQKR 294

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
             LPY+IDG+V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +
Sbjct: 295 PELPYEIDGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAV 354

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPVARL+PV +GG  +TNATLHN+D +             +D+R+GD V+V+RAG+VIP+
Sbjct: 355 TPVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRIGDTVVVRRAGDVIPE 403

Query: 413 VVDIIVNERHPDA--------------------------------QPFSFPSFCPICQSR 440
           VV +I   R                                    +P+  P+ CPIC+S 
Sbjct: 404 VVRVIFERRPMRETAVAVSDSIGHRQDDLFAETPSANQTRSVPLHKPYRLPTHCPICRSE 463

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + R+         A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +  
Sbjct: 464 IEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD-- 515

Query: 501 AFSIRIPADIF-----TLQRRQQTSTTKIENILGFGD----------------VSVTNLY 539
              +R  AD++     TLQ+ ++ +   +                            N+ 
Sbjct: 516 --LVRHFADLYRLDIPTLQKMKEAADKTVAESDQMPSEGSSVGASGKHKKPPVKWAENIL 573

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE---------------- 583
             I   +   L RF+F+LGIRHVG   A++LA+ + S +   +                 
Sbjct: 574 AGIESGKTPELARFLFALGIRHVGERTAKTLAQAFGSLERVRRAPEPVLACLPDIGTVVA 633

Query: 584 ---------------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQA 611
                          I+ ++A         + +P                  + +  AQA
Sbjct: 634 RSIAHFFAQAEQQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQA 693

Query: 612 IVE---------------------FYQNPRNICAVEALLKEVSPSIGRHE-----KNVSS 645
           + E                     +    +N   +E L    +      E       ++ 
Sbjct: 694 LWELAGQSIEGLQTDKALPTDWQAWRSEAQNAALLENLKTFFAQMPSEDEAAQRSDGINK 753

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LG
Sbjct: 754 AVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALG 813

Query: 706 VKIMNEEQFLFLL 718
           V +++E + L LL
Sbjct: 814 VSVLSEAELLTLL 826


>gi|268596277|ref|ZP_06130444.1| DNA ligase [Neisseria gonorrhoeae FA19]
 gi|268603059|ref|ZP_06137226.1| DNA ligase [Neisseria gonorrhoeae PID1]
 gi|291044437|ref|ZP_06570146.1| DNA ligase [Neisseria gonorrhoeae DGI2]
 gi|268550065|gb|EEZ45084.1| DNA ligase [Neisseria gonorrhoeae FA19]
 gi|268587190|gb|EEZ51866.1| DNA ligase [Neisseria gonorrhoeae PID1]
 gi|291011331|gb|EFE03327.1| DNA ligase [Neisseria gonorrhoeae DGI2]
          Length = 829

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/850 (29%), Positives = 390/850 (45%), Gaps = 171/850 (20%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+    + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+
Sbjct: 6   SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123
            P  ++GGE      +V H +P LSL   ++ +         ++  F  R+       D 
Sbjct: 63  SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIP 182
            +  + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N P
Sbjct: 120 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTP 179

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
           E+IEVRGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF +
Sbjct: 180 ELIEVRGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 239

Query: 242 GLGKTSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            + +    F A+   + L   + LGF + N           ++++Y  M+  R  LPY+I
Sbjct: 240 SIARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+
Sbjct: 300 DGTVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I  
Sbjct: 360 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 408

Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447
            R                                    +P+  P+ CPIC+S + R+   
Sbjct: 409 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE 468

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  
Sbjct: 469 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHF 518

Query: 508 ADIF-----TLQRRQQT------------------STTKIENILGFGD--VSVTNLYDSI 542
           AD++     TLQ+ ++T                    +K     G         N+   I
Sbjct: 519 ADLYRIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGI 578

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------- 583
              +   L RF+F+LGIRHVG   A++LA+ + + +   +                    
Sbjct: 579 ESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSI 638

Query: 584 ------------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE 614
                       I+ ++A         + +P                  + +  AQA+ E
Sbjct: 639 AHFFAQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWE 698

Query: 615 ---------------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIE 648
                                +    +N   +E L    +      E    S      + 
Sbjct: 699 LAGQSIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVA 758

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K  V TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +
Sbjct: 759 GKTFVLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSV 818

Query: 709 MNEEQFLFLL 718
           ++E + L LL
Sbjct: 819 LSEAELLTLL 828


>gi|282856148|ref|ZP_06265431.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455]
 gi|282585907|gb|EFB91192.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455]
          Length = 681

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/718 (32%), Positives = 357/718 (49%), Gaps = 46/718 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +       L  E++ H   YY    P I D EYDAL R         PDL R    + P 
Sbjct: 7   EKLDRYYWLVDELNRHGRLYYVLDAPEIEDDEYDALMREMLQFEREHPDLIRD---DSPS 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +  KVTH+ P LSLE +++  +L  ++ R      +     I +  E KID
Sbjct: 64  KRVGGAVLDAFEKVTHAKPMLSLEDVFSKNELHDWLQRAAEGVGQ---PWIPWCCELKID 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ +E GKFV A+ RGDG  GEDV+  ++ +  +P  L  ++P  +E+RGEVY+ K
Sbjct: 121 GLAVSLIFEDGKFVQASTRGDGVVGEDVTENLKTVKDLPLRLLGDVPGHLELRGEVYMGK 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
           + F  LN      G   +ANPRNAA+G LR+L+ +    R L  F + +          Q
Sbjct: 181 DGFAQLNAAREEAGLPLFANPRNAAAGSLRQLDTSVAAKRNLRLFTYYVQDAESYGLHSQ 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E+L+ ++  G PV    R+A T    + +       R +LPY  DG V+K D       
Sbjct: 241 SEILEWLKARGLPVQKAWRRAETETEALDFLERWSGERFSLPYATDGAVFKADATEYWTV 300

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++PRW +++K+  ++  T+L  I+I +GRTG+LTPVA LEPV + G ++  A+LH
Sbjct: 301 LGNNVKTPRWAVAYKYPPEERKTKLESIEISLGRTGVLTPVANLEPVLLSGTVVKRASLH 360

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N++ I+            +DIRVGDRV V++AGE+IP++V + V  R    +PF+ P+ C
Sbjct: 361 NDEEIQR-----------KDIRVGDRVWVRKAGEIIPEIVRVDVASRTGTEEPFAMPATC 409

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C + V +           A RC    +C AQ  + L HF SR   NI+GLG +  +  
Sbjct: 410 PVCGAAVAKLPGE------VALRCLN-RSCPAQLTQGLIHFASRQGMNIQGLGDRLAEQL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +S      ++  +D++ L+        ++      G+ S   L  +I K +   L+  I
Sbjct: 463 VRS----GLVKNFSDLYALRVEPLVRLDRM------GEKSAGKLLQAIAKSKERPLKFLI 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGIR VGA +A  LAK + S    A      +A           V  VG +IA +I  
Sbjct: 513 TALGIREVGAGVAAELAKRFSSLDEIAAADEERLAA----------VEGVGPVIAGSIKT 562

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+    N   ++ L +                 +  K  VFTG L ++ R +AQE VTQ 
Sbjct: 563 FFGEEHNRRLIDGLREAGVSMRSETAPEAPIGPLAGKTFVFTGELSRMSRAQAQELVTQR 622

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           G      +S+KT  ++VG+ PG K EKA +L V  +NEE+F  ++      +    +D
Sbjct: 623 GGKSVNSVSKKTSYVVVGEAPGGKAEKALRLNVPTLNEEEFFAMIDNLPQHMSGGTND 680


>gi|240122918|ref|ZP_04735874.1| putative DNA ligase [Neisseria gonorrhoeae PID332]
          Length = 823

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/845 (29%), Positives = 388/845 (45%), Gaps = 171/845 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG V 
Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPTRCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF- 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYR 517

Query: 512 ----TLQRRQQT------------------STTKIENILGFGD--VSVTNLYDSINKRRN 547
               TLQ+ ++T                    +K     G         N+   I   + 
Sbjct: 518 IDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKT 577

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------ 583
             L RF+F+LGIRHVG   A++LA+ + + +   +                         
Sbjct: 578 PELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFA 637

Query: 584 -------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE----- 614
                  I+ ++A         + +P                  + +  AQA+ E     
Sbjct: 638 QAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQS 697

Query: 615 ----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLV 653
                           +    +N   +E L    +      E    S      +  K  V
Sbjct: 698 IEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFV 757

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E +
Sbjct: 758 LTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAE 817

Query: 714 FLFLL 718
            L LL
Sbjct: 818 LLTLL 822


>gi|187251632|ref|YP_001876114.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191]
 gi|254781329|sp|B2KE31|DNLJ_ELUMP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|186971792|gb|ACC98777.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191]
          Length = 656

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/707 (33%), Positives = 367/707 (51%), Gaps = 52/707 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ +KE+  L  +I+YH++ YY      I D+EYD L  R   +    PD A   D   
Sbjct: 1   MDKIKKEIEDLRSKINYHNNLYYNLDNAEISDAEYDGLYARLKFLEAMNPDYA---DAAS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  KIGG  +     VTH+   +SL+  ++ E++ ++  R  +        +     E K
Sbjct: 58  PTQKIGGAASRVFTSVTHASQMMSLDNTYSSEEVLRWHERCVKSLG---HGNFEMVAEAK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG   ++ YE G    AA RGDG +GEDV+A I+ I TIP  +S      IE+RGE+YI
Sbjct: 115 IDGVSCSLTYEGGVLTVAATRGDGKTGEDVTANIKTIKTIPHNISFK--NKIEIRGEIYI 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K D   LN+     G   +AN RNAA+G +R+ N     +R L FF H  G   ++  K
Sbjct: 173 EKADLKRLNEIQENEGENIFANTRNAAAGSIRQKNAEISASRPLKFFAHSFGYG-DVDVK 231

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           G  E +   +  GF V     +    + I S+Y   + +R+ LPYD+DG+V K++ F+ Q
Sbjct: 232 GFAEFMDLCKSWGFSVTPNRIRTADINEITSFYKRFEELRAGLPYDVDGIVVKINSFAEQ 291

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LG  A+SPRW I+ K+   Q  T +  I   +GRTGI+TPVA LEPV + G +I+NAT
Sbjct: 292 KILGVTAKSPRWAIAFKYKPPQGKTVVNKIIFSVGRTGIITPVAELEPVAVAGVIISNAT 351

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D IK L            ++ GD V+V+RAGEVIPK+++++ +           P 
Sbjct: 352 LHNFDEIKRL-----------GVKEGDTVIVERAGEVIPKILNVVKD---GGGNEVKAPK 397

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S+V R  +        A RC    AC AQ    L HFVSR A +I+G G+  ++
Sbjct: 398 NCPSCGSKVYRYEDE------VAIRCINP-ACPAQIKGHLLHFVSRAAMDIDGFGEAVVE 450

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              + +     ++  ADI+ L+  Q  +         F D  V NL  ++   +  SL R
Sbjct: 451 QVVEKK----YVKDFADIYNLKAEQLLTLDL------FKDKKVNNLLLAVEASKKRSLSR 500

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +++ GIRHVG +    LA ++       ++I N++A + +D+    ++  +G ++ Q++
Sbjct: 501 VLYAFGIRHVGQKTGEILANHF-------EDIENMLAASLEDFQ---KINEIGPVVGQSV 550

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            +F Q+ +    +  L            +   +E+  K LVFTG L  + R +A+     
Sbjct: 551 YDFMQSAKGKEEIARLKTAGVNFTQPKVQLAGNELLGKTLVFTGEL-NMPRTQAEALAKA 609

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  VS  +S KT  ++ G + GSKL KAQ LGV +++EE+FL L++
Sbjct: 610 HGGKVSGSVSSKTSYVVAGADAGSKLTKAQSLGVSVISEEEFLNLIK 656


>gi|325696052|gb|EGD37943.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK160]
          Length = 652

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/702 (32%), Positives = 361/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRIRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q  
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQVGSQEA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  LGF VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +P   PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEPLEIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYTAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I NE+    L
Sbjct: 611 NVSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRNEDWLDSL 652


>gi|46199040|ref|YP_004707.1| NAD-dependent DNA ligase [Thermus thermophilus HB27]
 gi|81405933|sp|Q72JN8|DNLJ_THET2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46196664|gb|AAS81080.1| NAD-dependent DNA ligase [Thermus thermophilus HB27]
          Length = 676

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/714 (33%), Positives = 380/714 (53%), Gaps = 55/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK ++ L   I YH+  YY  + P I D+EYD L R    +   FP+L   + P
Sbjct: 1   MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEL---KSP 57

Query: 72  NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G     +    V H     SL+  +N ++L+ F  RI R   +  +    +T+
Sbjct: 58  DSPTEQVGARPLEATFRPVRHPTRMYSLDNAFNFDELKAFEERIERALGR--EGPFAYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE G  VY A RGDG  GE+V+  +  IPTIPR L   +PE +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEDGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLK-GVPERLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG----K 245
           VY+    FL LN+E+   G + + NPRNAA+G LR+ +P     R L    + LG    +
Sbjct: 175 VYMPVEAFLRLNEELEERGERIFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLGLEE 234

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q+ +L  ++  GFPV +G  +A    G+ + Y +    R  LP++ DG+V K
Sbjct: 235 VEREGVATQFALLHWLKEKGFPVEHGYARAVGAEGVEAVYQDWLKKRRALPFEADGVVVK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +DE +L ++LG  AR+PR+ I++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV + G
Sbjct: 295 LDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFLEG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  + 
Sbjct: 355 SEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEE 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P  +P  CP C  R++++           HRC   L C A++ E ++HF SR A +I+G
Sbjct: 404 RPIRWPETCPECGHRLLKE--------GKVHRCPNPL-CPAKRFEAIRHFASRKAMDIQG 454

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ ++   +       ++  AD++ L++       ++      G+ S  NL   I + 
Sbjct: 455 LGEKLIERLLEK----GLVKDVADLYRLRKEDLVGLERM------GEKSAQNLLRQIEES 504

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   LER +++LG+  VG  +AR+LA  + +     +     +    +            
Sbjct: 505 KRRGLERLLYALGLPGVGEVLARNLAARFGNMDRLLEASLEELLEVEEVGE--------- 555

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            + A+AI+E  ++P     V  L +       + +      ++    V TG L +  R +
Sbjct: 556 -LTARAILETLKDPAFRDLVRRLKEAGVEMEAKEK--GGEALKGLTFVITGELSRP-REE 611

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  + EE+   LL+
Sbjct: 612 VKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLE 665


>gi|50913936|ref|YP_059908.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10394]
 gi|81372213|sp|Q5XCY8|DNLJ_STRP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50903010|gb|AAT86725.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10394]
          Length = 652

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/701 (30%), Positives = 358/701 (51%), Gaps = 53/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVKA-----EFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+     G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q E
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLY--QEASPTARNQQNE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F 
Sbjct: 398 CGSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F 
Sbjct: 450 ---LAGFVHDVADIYQLTK------EDFMQLDGIKEKSADKLLAAIEASKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G++++R + + Y             IA          R+  +G  IAQ++ +++
Sbjct: 501 LGIRHIGSKVSRLILEVYGDISALLTAKEEEIA----------RIDGLGSTIAQSLTQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +       V+      V+      + N  + +    +V TG L ++ R++A++ +  LGA
Sbjct: 551 EQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    
Sbjct: 611 KVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRK 651


>gi|327470726|gb|EGF16182.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK330]
          Length = 652

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/702 (32%), Positives = 361/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRIRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q E
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQVGSQEE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLAALDFSVNPTHILADSIEAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +P   PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEPLEVPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESDLVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYTAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|306833158|ref|ZP_07466288.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338]
 gi|304424732|gb|EFM27868.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338]
          Length = 652

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/702 (31%), Positives = 357/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVKA-----EFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L+   P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLA--QPLNITVRGEAYLPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G+  +ANPRNAA+G LR+LN   +  R L  F++   + +      Q +
Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLY--QEVASTSMTTQND 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++LG
Sbjct: 230 VLEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKR-GKQVPMPIPENCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   FK
Sbjct: 398 CGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFK 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +E     +   ADI+ L      S        GF + S   LY++I   +  S ++ +F 
Sbjct: 451 AE----LVHDVADIYQLTVEDLLSLD------GFKEKSAEKLYNAIQVSKENSADKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ +R L + + +                 D  S+  +  +G +IA+++  ++
Sbjct: 501 LGIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIAKSLRSYF 550

Query: 617 QNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   +  L            + +  +++    +V TG L+++ R++A+E +  LGA
Sbjct: 551 AKEEATELLHELENAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTDI++ G + GSKL KAQ LG+ + +E     L
Sbjct: 611 KVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652


>gi|239944478|ref|ZP_04696415.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
 gi|239990936|ref|ZP_04711600.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 11379]
 gi|291447943|ref|ZP_06587333.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
 gi|291350890|gb|EFE77794.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
          Length = 743

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/755 (28%), Positives = 359/755 (47%), Gaps = 61/755 (8%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   + +  ++      R+  + L ++I  H   YY   +P++ D+E+D L R  +A+  
Sbjct: 1   MAGEERVEQDSSVPAGVRETHALLAEQIEEHRFRYYVKDQPVVSDAEFDRLLRSLEALED 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +P L     P+ P  ++ G        V H    LSL+  ++ E+L  +  R+ +    
Sbjct: 61  EYPPL---RTPDSPTQQVAGPYITEFTSVEHRERMLSLDNAFDDEELAAWADRVAKETGT 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
            D +   F  E K+DG  + + YE G+   AA RGDG +GED++  +R I  IP  L   
Sbjct: 118 PDHH---FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGE 174

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           +IP ++E+RGEV+     F  LN  ++A   KP+ANPRNAA+G LR+ +P    +R L+ 
Sbjct: 175 DIPALVEIRGEVFFPMEGFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTASRPLHM 234

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            VHG+G    +      +    +   G P     R  ++  G+  +       R ++ ++
Sbjct: 235 VVHGIGAHEGLRIDRLSQAYDLLHSWGLPTARHNRVVDSLAGVREFIAYFGEHRHSVEHE 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V K+DE  LQ +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++
Sbjct: 295 IDGVVVKLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQV 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ +  ATLHN++ +K            + + +GD V++++AG+VIP+++  +V
Sbjct: 355 EPVEVAGSEVEFATLHNQNVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVV 403

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R    + F  P+ CP C + +         +     RC     C AQ  ER+ +   R
Sbjct: 404 DLRDGTEKAFEMPTHCPECGTEL-----RPMKEGDIDLRCPNARTCPAQLRERVFYLAGR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSI-RIPADIFTL--------------------QRRQ 517
            + +I+  G        +  +PA  + +  +D+F+L                    +R  
Sbjct: 459 KSLDIDHFGYVAAAALTRPLEPAEPVLKDESDLFSLTIEQLLPIRAYVLDQDSGLPKRDP 518

Query: 518 QTSTTK----IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           +T   K      N  G    +   + + I   +   L R +  L IRHVG   A+ LA+ 
Sbjct: 519 KTGEEKIATVFANQQGEPKKNAVAMLEGIAAAKEAPLARILTGLSIRHVGPVAAQELARQ 578

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S              +      L     VG  IA +I +++    +   +    +   
Sbjct: 579 FRSVDRI----------DEATEEELAAADGVGPTIAASIKQWFAEDWHREILRKWREAGV 628

Query: 634 PSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   E      +E   +V TGTL    R  A+E +  LGA V+  +S+KT  ++VG
Sbjct: 629 RMADEGSDEDEGPRPLEGLTVVVTGTLAGHTRDGAKEALQTLGAKVTGSVSKKTAFVVVG 688

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           DNPGSK +KA QL V +++E+ F  LLQ      R
Sbjct: 689 DNPGSKYDKAMQLKVPVLDEDGFAILLQDGPERAR 723


>gi|306831054|ref|ZP_07464215.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426620|gb|EFM29731.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 652

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/702 (31%), Positives = 357/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L +F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEEFDRRVKA-----EFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L+   P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLA--QPLNITVRGEAYLPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G+  +ANPRNAA+G LR+LN   +  R L  F++   + +      Q +
Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLY--QEVASTSMTTQND 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++LG
Sbjct: 230 VLEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRDKQV-PMPIPESCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   FK
Sbjct: 398 CGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFK 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +E     +   ADI+ L      S        GF + S   LY++I   +  S ++ +F 
Sbjct: 451 AE----LVHDVADIYQLTVEDLLSLD------GFKEKSAEKLYNAIQVSKENSADKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ +R L + + +                 D  S+  +  +G +IA ++  ++
Sbjct: 501 LGIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIANSLRSYF 550

Query: 617 QNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   +  L            + +  +++    +V TG L+++ R++A+E +  LGA
Sbjct: 551 AKKEATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTDI++ G + GSKL KAQ LG+ + +E     L
Sbjct: 611 KVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652


>gi|295394422|ref|ZP_06804646.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972774|gb|EFG48625.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 740

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/758 (29%), Positives = 360/758 (47%), Gaps = 78/758 (10%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
             L   + +K  + L  +I  H + YY +  P I D E+D L    + +  A+P+LAR  
Sbjct: 15  AELEPAERQKLAAELAAQIEEHREAYYVHDAPKISDKEFDELVHALEDLESAYPELARD- 73

Query: 70  DPNGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             + P  K+GG     +   V H     SLE ++++E+L ++  R+ +           F
Sbjct: 74  --DSPTQKVGGYADTEAFAPVQHVARMYSLEDVFSVEELDQWFERVAKSVPA----GTPF 127

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEV 187
             E KIDG    + YE G+ V AA RGDG++GED++A +R I  IP  L+  N P  +E+
Sbjct: 128 LSEVKIDGLACNLLYENGQLVRAATRGDGYTGEDITANVRTIDDIPTTLNATNPPARVEI 187

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL--- 243
           RGEV+   + F  LN  ++  G+ P+ANPRNAA+G LR+ +P+    R L+  VHG+   
Sbjct: 188 RGEVFFPSDKFADLNASLVEQGKPPFANPRNAAAGSLRQKDPSITAQRPLHMLVHGIAAW 247

Query: 244 --GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G         Q ++   +R  G P++   R   T   + +Y  E    R  L ++IDG
Sbjct: 248 QSGDAGAQEPTQQSQVYDLLRDWGMPISPYYRVCTTQDDVHAYITEFGERRHELLHEIDG 307

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVD  +LQ++LG  +R+PRW  ++K+  ++ +T+LLDI +Q+GRTG +TP A +EPV
Sbjct: 308 IVVKVDNIALQEELGYTSRAPRWACAYKYPPEEVTTKLLDIRVQVGRTGRVTPFAVMEPV 367

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ ++ ATLHN   +K            + + +GD V++++AG+VIP+V+  +   R
Sbjct: 368 LVAGSTVSRATLHNAHEVKR-----------KGVLIGDDVVIRKAGDVIPEVLGPVTANR 416

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  P+ CP C + +      +  +     RC     C AQ   RL +  SR A 
Sbjct: 417 DGSERAFVMPTHCPDCGAELY-----EQKEGDKDLRCPNSETCPAQVANRLAYLASRAAL 471

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT------------------- 522
           +IE LG++      +       ++  A +F L                            
Sbjct: 472 DIELLGEEASLALTQPLGEP-PLKSEAGLFDLTVDDLGEVEIEREVKKNGVPTGEIERVK 530

Query: 523 ---KIENILGFGDVSVT------------NLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
                E +   G+                 + D I K +   L R + +L IRHVG   A
Sbjct: 531 YFFTKEELYASGEKKGQVKKPSQPRANTLAMLDEIEKAKGQPLWRVLVALSIRHVGPTAA 590

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           R +A ++ S            A  N     L+ V  VG+ IAQ++V+++    +   V++
Sbjct: 591 RDIAAHFRSMD----------AVRNATVEDLLEVEGVGETIAQSVVDWFAEEWHAHIVDS 640

Query: 628 LLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
             K           E      +E   +V TG+L    R   +E +   G   S+ +S+KT
Sbjct: 641 WAKAGVRMADEPAEESTQPQTLEGLTIVATGSLDNFTRDGIKESIVGAGGKASSSVSKKT 700

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           D ++ G+N GSKL KAQ LGV ++NEEQF  LL     
Sbjct: 701 DYVVAGENAGSKLTKAQDLGVPVLNEEQFQQLLATGEA 738


>gi|325977951|ref|YP_004287667.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177879|emb|CBZ47923.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 652

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/702 (31%), Positives = 356/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVKA-----EFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L+   P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLA--QPLNITVRGEAYLPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G+  +ANPRNAA+G LR+LN   +  R L  F++   + +      Q +
Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLY--QEVASTSMTTQND 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++LG
Sbjct: 230 VLEELSRYGFSVNPRRITTSSMTDIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRDKQV-PMPIPESCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   FK
Sbjct: 398 CGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFK 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +E     +   ADI+ L      S        GF + S   LY++I   +  S ++ +F 
Sbjct: 451 AE----LVHDVADIYQLTVEDLLSLD------GFKEKSAEKLYNAIQVSKENSADKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ +R L + + +                 D  S+  +  +G +IA ++  ++
Sbjct: 501 LGIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIANSLRSYF 550

Query: 617 QNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   +  L            + +  +++    +V TG L+++ R++A+E +  LGA
Sbjct: 551 AKKEATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTDI++ G + GSKL KAQ LG+ + +E     L
Sbjct: 611 KVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652


>gi|284032790|ref|YP_003382721.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
 gi|283812083|gb|ADB33922.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
          Length = 709

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/718 (30%), Positives = 354/718 (49%), Gaps = 37/718 (5%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +  +  + R+  ++L +EI  H   YY  +   I D+++DAL      I   + +L    
Sbjct: 13  QPAAPAEVRERHAALSREIEEHRFRYY-MATSTISDADFDALMHELQGIEQQYQEL---R 68

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  K+G  ++     VTH     SL   ++ E +  +  R+ R    +  +   F 
Sbjct: 69  TPDSPTQKVGVPISTLFAPVTHPTRMESLGNAFSAEQMEAWAKRLEREVTAQQIHDSGFL 128

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            E K+DG  + + YE G+ V  A RGDG +GEDV+  +R I +IP  L   ++P  +EVR
Sbjct: 129 CELKVDGLALDLVYENGRLVTGATRGDGRTGEDVTLNVRTIDSIPNELAGDDLPSFLEVR 188

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY    DF  LN +++  G+ P++NPRN+A+G LR+ +P     R L F VHGLGK  
Sbjct: 189 GEVYFRVEDFEQLNAQLVEAGKDPFSNPRNSAAGSLRQKDPRVSAARPLRFVVHGLGKVE 248

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +   E  ++++  G PV++  R+  T   +  +       R ++ ++IDG+V KVD
Sbjct: 249 GYRVRRLSEAYEQLKAWGLPVSDRARRVETLAEVNEFIAHYGENRHSVDHEIDGVVVKVD 308

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E  LQ+ LG  + +PRW I++K+  ++ +T+LLDI++ +GRTG +TP  ++EPV + G+ 
Sbjct: 309 EVDLQRALGSTSSAPRWAIAYKYPPEEVTTKLLDIEVNVGRTGRVTPYGKMEPVRVAGST 368

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN   ++            + + +GD V++++AG+VIP+++  ++  R  +A P
Sbjct: 369 VEFATLHNAREVER-----------KGVWIGDTVVLRKAGDVIPEILGPVIELRPQEAHP 417

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP C + +         +     RC    +C AQ  ERL H   R AF+IE LG
Sbjct: 418 FRMPTQCPSCGTTL-----RPMKEGDVDIRCPNAQSCPAQLRERLFHLAGRSAFDIEVLG 472

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +  D     E     I    D+F L  +    +       G    +   L  ++   + 
Sbjct: 473 FKAADALISGE----LITDEGDLFDLTEQDLGRSPFFTTKAGALSANAKRLLANLETAKT 528

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R + +L IRHVG   A +LA  Y           + +A          ++  VG  
Sbjct: 529 QPLARGLVALSIRHVGPTAAAALAAAYDDIDAIQAAGEDELA----------QIEGVGPT 578

Query: 608 IAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           IA A++E++Q   +   V       V     R    V   +    +V TGT++   R +A
Sbjct: 579 IAHAVIEWFQVDWHQQIVRKWKAAGVQLRQERTGPTVEQTLTGLSVVVTGTVEGFSRDEA 638

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            E +   G   +  +S+KT  ++VGD+PGSK +KA QLGV I++   F  LL Q    
Sbjct: 639 TEAIVSRGGKAAGSVSKKTSFVVVGDSPGSKYDKAVQLGVPILDAAGFEVLLDQGADA 696


>gi|240013546|ref|ZP_04720459.1| putative DNA ligase [Neisseria gonorrhoeae DGI18]
 gi|240120618|ref|ZP_04733580.1| putative DNA ligase [Neisseria gonorrhoeae PID24-1]
          Length = 823

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/845 (29%), Positives = 388/845 (45%), Gaps = 171/845 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-K 245
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + +  +
Sbjct: 179 RGEVLMLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238

Query: 246 TSEIFAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              + A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG V 
Sbjct: 239 QGGLIAEEHIQELAYFQALGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF- 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYR 517

Query: 512 ----TLQRRQQT------------------STTKIENILGFGD--VSVTNLYDSINKRRN 547
               TLQ+ ++T                    +K     G         N+   I   + 
Sbjct: 518 IDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKT 577

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------ 583
             L RF+F+LGIRHVG   A++LA+ + + +   +                         
Sbjct: 578 PELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFA 637

Query: 584 -------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE----- 614
                  I+ ++A         + +P                  + +  AQA+ E     
Sbjct: 638 QAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQS 697

Query: 615 ----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLV 653
                           +    +N   +E L    +      E    S      +  K  V
Sbjct: 698 IEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFV 757

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E +
Sbjct: 758 LTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAE 817

Query: 714 FLFLL 718
            L LL
Sbjct: 818 LLTLL 822


>gi|332366947|gb|EGJ44687.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1059]
          Length = 652

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/702 (32%), Positives = 361/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q  
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQVGSQEA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLAALGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +P   PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEPLEIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYTAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q   +I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSHILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|306827641|ref|ZP_07460921.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782]
 gi|304430204|gb|EFM33233.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782]
          Length = 652

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/702 (30%), Positives = 358/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVKA-----EFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+     G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q E
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLY--QEASPTARNQQNE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F 
Sbjct: 398 CGSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F 
Sbjct: 450 ---LAGFVHDVADIYQLTK------EDFMQLDGIKEKSADKLLAAIEASKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G++++R + +               IA          R+  +G  IAQ++ +++
Sbjct: 501 LGIRHIGSKVSRLILEVCGDISALLTAKEEEIA----------RIDGLGSTIAQSLTQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +       V+      V+      + N  + +    +V TG L ++ R++A++ +  LGA
Sbjct: 551 EQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 611 KVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRKL 652


>gi|300361107|ref|ZP_07057284.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03]
 gi|300353726|gb|EFJ69597.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03]
          Length = 668

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/716 (30%), Positives = 368/716 (51%), Gaps = 52/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  QA +++  L +++    + YY    PI+ D+ YD   +    +   FPDL  S
Sbjct: 1   MAVLTHNQASQKVDELRKKLDEWAEDYYAKDAPIVEDAVYDKAYQELVELEKRFPDLVTS 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H IP LS+  +++ ++L++F  RI +       + + +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPIPMLSMGDVFSKDELKEFDDRITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD
Sbjct: 232 -RNITSQHQAIDEMNRLGFHTNQTGRRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A + PV + G +
Sbjct: 291 DLSLQNELGNTVKVPRWEIAYKFPPEEQETIVKEIEWTVGRTGVVTPTAVMNPVQLAGTV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LHN DY++            + +R+GD V + +AG++IP++  +++N+R  D++P
Sbjct: 351 VSRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +      +     +   AD++ L   Q         +  F D S+TNL  SI   + 
Sbjct: 453 PRIVKQLIDKK----FVNDVADLYHLTNEQL------SQLDHFKDKSITNLLTSIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S E  +F LGI HVGA+ AR + + Y + +  +Q               LI +  +G+ 
Sbjct: 503 NSAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELISIDTIGET 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRH 664
           IA+++  ++  P     ++ L              E+   +  + K +V TG L    R 
Sbjct: 553 IAESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSDFTRS 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 613 EFTKKLQNLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|313891779|ref|ZP_07825384.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E]
 gi|313119773|gb|EFR42960.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E]
          Length = 666

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/705 (32%), Positives = 373/705 (52%), Gaps = 46/705 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +   ++  L +E+ YH   YY   KP I D E+D + R        +P+L     P+ P 
Sbjct: 5   EIISKVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELI---TPDSPT 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG+      KV    P LSL   +N ++L +F   +         ++I +  E KID
Sbjct: 62  QRVGGKATGDFKKVEFKKPMLSLSNAFNGKELIEFDKGVKETLNT---DNIEYITELKID 118

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE+GK +    RGDG  GEDV+A ++ I +IP  +  N P  IE+RGEV++ +
Sbjct: 119 GLSMNLIYEEGKLIRGLTRGDGKVGEDVTANVKTIKSIPLYI-ENAPPYIEIRGEVFMPR 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           + F++LN++  A G  P+AN RNAASG +R+L+P    +R L+FF + +G+T  I  K Q
Sbjct: 178 SSFVSLNEKRDAAGIMPFANCRNAASGSIRQLDPNVTASRNLDFFAYSVGETEGIEIKNQ 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L  ++   F VN   ++ N+   ++   NE +  R  L YD DG+V KV++F+ Q  
Sbjct: 238 ESLLNLLKKFHFKVNPNYKKINSIEKVIEIINEWQEKRHNLGYDTDGMVVKVNDFAQQNI 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++ P+W I++K+  ++  T + +I + +GRTG+LTP A L+PV I G ++  ATLH
Sbjct: 298 LGATSKDPKWAIAYKYPPEEEETVVENIIVTMGRTGVLTPSADLKPVQIAGTVVKRATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N ++I+            +DIR+GD V + ++GE+IP++  ++ N+R    + F  PS C
Sbjct: 358 NMNFIE-----------EKDIRIGDIVKIYKSGEIIPEISVVLKNKRTGKEKKFIMPSEC 406

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+ ++ R           A+RC     C     E L HF SR+A NIEGLG   +D  
Sbjct: 407 PLCKHKIYRTEGE------VAYRCINP-DCGGVIRENLIHFASRNAMNIEGLGPAVIDGL 459

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    I   AD + L++        I  I   G+ S  NL  SI   +N  L +F+
Sbjct: 460 LAYN----LIENIADFYELRK------DDIIQIERMGEKSAKNLLISIENSKNRGLSKFL 509

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIRH+G + +  +++ +                 N    S+  V  +G+I A+ I +
Sbjct: 510 FALGIRHLGEKGSELISEKFKDIDVLM----------NASVDSIKSVSGIGNITAEHIYK 559

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +++N +N   +E L            K+  +  +   +V TG L  I R +A E +  LG
Sbjct: 560 YFKNEKNKKIIERLKDHGILMKLNERKSEGNAFKGHNVVLTGKLSNIGRREAGEIIKALG 619

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + + +++ T ++IVG+N GSKLEKA++ G+KI+NE  FL ++ 
Sbjct: 620 GNLQSTVTKTTTLVIVGENAGSKLEKAREKGIKIINENDFLKIIN 664


>gi|261377933|ref|ZP_05982506.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685]
 gi|269145793|gb|EEZ72211.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685]
          Length = 831

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/853 (29%), Positives = 390/853 (45%), Gaps = 179/853 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQHIRRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238

Query: 247 SEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              F A+   + L   + LGF + N           ++++Y +M+  R  LPY+IDG+V 
Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A---------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 408 ETAVMGLSDGIKYQQDDLFAEAPAANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 463

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 464 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVGQD----LVRHFADLY 517

Query: 512 TL------QRRQQTSTTKIENILGFGD-------------------VSVTNLYDSINKRR 546
            L      + ++       EN  G  +                       N+   I   +
Sbjct: 518 RLDIPTLQKMKETADKGSSENEDGDAETVSGDLSERNTQNGKKQPTKWAENILAGIEASK 577

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSY----------------------------- 577
              L RF+F+LGIRHVG   A++LA+ + S                              
Sbjct: 578 TPELSRFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVAHSIAYFF 637

Query: 578 --QNFAQEINNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE---- 614
                   I+ ++A         + +P                  + +  AQA+ E    
Sbjct: 638 AQDAQQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGK 697

Query: 615 -----------------FYQNPRNICAVEALLKE------------VSPSIGRHEKNVSS 645
                            +   P+N   +E L               VS         ++ 
Sbjct: 698 SIEGLQTDKALPADWQAWRSEPQNAALLENLKTFFAQTSSENQEATVSECAASPWDGLNE 757

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LG
Sbjct: 758 AVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALG 817

Query: 706 VKIMNEEQFLFLL 718
           V +++E + L LL
Sbjct: 818 VSVLSEAELLTLL 830


>gi|254383201|ref|ZP_04998554.1| DNA ligase [Streptomyces sp. Mg1]
 gi|194342099|gb|EDX23065.1| DNA ligase [Streptomyces sp. Mg1]
          Length = 736

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/755 (29%), Positives = 361/755 (47%), Gaps = 61/755 (8%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   Q    +A      R++ + L +++  H   YY   +P++ D+E+D L R  +A+  
Sbjct: 1   MAAEQKQAGDAAVPAAVREQHALLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRSLEALEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +P L     P+ P  K+ G        V H    LSL+  ++ E+L  +  R+ R    
Sbjct: 61  QYPQL---RTPDSPTQKVAGAYETDFASVQHRERMLSLDNAFDDEELAAWAERVARDANT 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
            D +   +  E K+DG  + + YE G+   AA RGDG +GED++  +R I  IP  L+ +
Sbjct: 118 SDYH---YLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGD 174

Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
            IP ++E+RGEV+     F  LN  ++    KP+ANPRNAA+G LR+ +P    +R L+ 
Sbjct: 175 RIPALVEIRGEVFFPMEKFEELNARLVETEGKPFANPRNAAAGSLRQKDPKITASRPLHM 234

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            VHG+G              + +R  G P     R  ++   +  +       R ++ ++
Sbjct: 235 VVHGIGAREGFDIDKLSHAYELLREWGLPTARHNRVVSSLAEVREFITHFGENRHSVEHE 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V K+DE  LQ +LG  AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++
Sbjct: 295 IDGVVVKLDEIPLQGRLGSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQV 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ +  ATLHN++ +K            + + +GD V++++AG+VIP+++  +V
Sbjct: 355 EPVTVAGSEVEFATLHNQEVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVV 403

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R    + F  P+ CP C + +         +     RC  G  C AQ  ERL +   R
Sbjct: 404 DLRDGSEREFVMPAECPECGTPL-----RPMKEGDIDLRCPNGQTCPAQLRERLFYLGGR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTL--------------------QRRQ 517
              +IE  G           +PA   +R   D+F L                    +R  
Sbjct: 459 QCLDIENFGAVAAAALTNPLEPAEPPLRDEGDLFGLTIEDLLPIKAYVLDGDSGLPKRDP 518

Query: 518 QTSTTK----IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           +T   K      N  G    +   + ++I   +   L R I  L IRHVG   A +LA+ 
Sbjct: 519 KTGEEKIVTVFANQKGEPKKNALAMLENIAAAKERPLARVINGLSIRHVGPVAAEALARE 578

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   Q     +A              VG IIA ++ E++    +   +    +   
Sbjct: 579 FRSIERIEQATEEELAAT----------DGVGAIIAASLKEWFAVDWHQEILRKWREAGV 628

Query: 634 PS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                G  E+     +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VG
Sbjct: 629 RMEEEGSGEEEGPRPLEGLTVVVTGTLESHTRDGAKEALQSRGAKVTGSVSKKTSFVVVG 688

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           DNPGSK +KA QL + I+++  F  LL+Q     R
Sbjct: 689 DNPGSKYDKAVQLKLAILDDAGFAVLLEQGPDAAR 723


>gi|320546461|ref|ZP_08040776.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812]
 gi|320448846|gb|EFW89574.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812]
          Length = 652

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/702 (31%), Positives = 354/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVKA-----EFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L+   P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLA--QPLNITVRGEAYLPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G+  +ANPRNAA+G LR+LN   +  R L  F++   + +      Q  
Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTAVVAKRNLATFLY--QEVASTSMTTQNN 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++LG
Sbjct: 230 VLEELSRFGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRDKQV-PMPIPESCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   FK
Sbjct: 398 CGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFK 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +E     +   ADI+ L      S        GF + S   LY++I   +  S ++ +F 
Sbjct: 451 AE----LVHDVADIYQLTVEDLLSLD------GFKEKSAEKLYNAIQVSKENSADKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ +R L + + +                 D  S+  +  +G +IA ++  ++
Sbjct: 501 LGIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIANSLRSYF 550

Query: 617 QNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   +  L            +    +++    +V TG L+++ R++A+E +  LGA
Sbjct: 551 AKKEATELLHELKNVGVNFAYLGKKVPKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTDI++ G + GSKL KAQ LG+ + +E     L
Sbjct: 611 KVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652


>gi|327489925|gb|EGF21714.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1058]
          Length = 652

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/702 (32%), Positives = 360/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQASYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q  
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQADSQEA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLADLDFSVNPTHILADSIEAVWKFIEKIAQERDSLPYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +P   PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEPLEIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNINGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S E  +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYTAIQASKENSAECLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G++ GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGEDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|169350953|ref|ZP_02867891.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552]
 gi|169292015|gb|EDS74148.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552]
          Length = 682

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/703 (31%), Positives = 362/703 (51%), Gaps = 47/703 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
             + L+Q+I YH+D YY    P I D EYD + +   A+    P+       + P  K+G
Sbjct: 24  RYNELKQKIMYHNDRYYNQDDPEISDYEYDMMMQELKALEKKHPEYITE---DSPTQKVG 80

Query: 80  GEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GE        V H++P LSL+ +++ E++ +F+  +         +   F +E KIDG  
Sbjct: 81  GEAKREAGVLVRHNVPMLSLQDVFSKEEVEQFVKDMQEQL-----DDPTFVVEYKIDGLS 135

Query: 139 ITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
           + +RY  GK   A  RGDG   GEDV+A  + I  + + L   I E +EVRGEVY++   
Sbjct: 136 LALRYVNGKLDVAITRGDGILQGEDVTANAKVIKDVKKKLKEPI-EYLEVRGEVYMTNEA 194

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+     G+K +ANPRN A+G LR+L+      R L+ FV  +            E
Sbjct: 195 FNQVNEMQEIKGKKTFANPRNCAAGTLRQLDSKITKERNLSMFVFNIQDVRGKQFVSHSE 254

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
             + ++  G  V    +   T   +     E+   R  L YDIDG V K+D F  +++LG
Sbjct: 255 GYEYLKKQGIKVIENYKICKTADEVWQAIEEIGENRDKLKYDIDGAVVKIDNFEDRRKLG 314

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PRW I++K+  ++  T+LL+I++ +GRTG +TP A  EP+ + G  ++ ATLHN+
Sbjct: 315 NTAKVPRWAIAYKYPPEEKETKLLEIELSVGRTGRITPTAIFEPIRLCGTTVSRATLHNQ 374

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I  L           DIR+GD ++V ++GE+IPKV  ++  +R  ++ P+     CP+
Sbjct: 375 DFIDDL-----------DIRIGDTIVVYKSGEIIPKVKRVVKEKRPTNSVPYVIGDRCPV 423

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  +R+ N       A  +CT   +C ++ +  + +FV RDA +I+G G   ++    
Sbjct: 424 CNAPAIREGN------NADIKCTNH-SCPSKLVRNIVNFVGRDAMDIKGFGLAYVETLVS 476

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  +DI++L  ++Q    K   ++G    S  NL ++I K +N    + + S
Sbjct: 477 ----LGYIKDLSDIYSLIGKRQELLDK--KVIGLV-KSTDNLLNAIEKSKNNDASKLLTS 529

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A++L K + S  N            N  +  LI V  +GDI A AI+ ++
Sbjct: 530 LGISNVGKSAAKNLMKKFKSIDNLM----------NASYAQLIEVNDIGDISAMAIINYF 579

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +NP N   ++ L           +++     +    V TGTL  + R +A + + + G  
Sbjct: 580 KNPDNRIVIDKLKNYGVNMKIIEDQDSDDRFDGMTFVVTGTLPTLSRKEASDIIEKHGGK 639

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KT+ ++ G+N GSKL KAQ L VKI++EE    +++
Sbjct: 640 VSGSVSKKTNYLLAGENAGSKLIKAQSLNVKIIDEETLFEMVK 682


>gi|305682056|ref|ZP_07404860.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266]
 gi|305658529|gb|EFM48032.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266]
          Length = 715

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/718 (29%), Positives = 351/718 (48%), Gaps = 48/718 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P E    ++  +E   L  E++ H + YY    P I D+E+DAL ++ +A+    P+LA
Sbjct: 11  TPAETTDTQEIHQEWQRLASEVTRHRELYYNQ-TPEITDAEFDALFKKLEALEADHPELA 69

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  ++G  +  S   V H    LSL+ +++ E+L +++ R+         ++ 
Sbjct: 70  ---TPDSPTQQVGAPVESSFENVEHLERMLSLDNVFDEEELDEWLQRV---------DAP 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIP 182
            +  E KIDG  + + Y  G    AA RGDG  GEDV+   + I  +P  L+      IP
Sbjct: 118 EYVTELKIDGLSLALVYRNGVLERAATRGDGRIGEDVTENAKVIQDVPHTLTATEEFPIP 177

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241
           +++EVRGEV+I+  DF  +N++    G KP+ANPRNAA+G LR+ +   + R  L    H
Sbjct: 178 DLLEVRGEVFIAVEDFAEVNEQRQKDGGKPFANPRNAAAGSLRQKDVEAVRRRKLRMLCH 237

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G+G T       QY   + +   G PV++  +   T   +       +  R     ++DG
Sbjct: 238 GIGATEGFTPASQYHAYEALAAWGLPVSDYTKLVKTIDEVHKQVAYWEKHRGDAVCEMDG 297

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           LV KVD  + Q+QLG  +R+PRW I++K+  ++  T+LLDI   +GRTG +TP A +EPV
Sbjct: 298 LVVKVDSIAEQRQLGATSRAPRWAIAYKYPPEEVQTKLLDIHEGVGRTGRVTPYAVMEPV 357

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           ++ G+++  ATLHN+  +K            + + +GD V++++AGE+IP+V+  +V  R
Sbjct: 358 SVAGSIVELATLHNQTEVKR-----------KGVLIGDTVVIRKAGEIIPEVLGPVVERR 406

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + + FP  CP C +++         +     RC     C AQ   R+K+   R  F
Sbjct: 407 DGTEREYVFPENCPSCGTKL-----APQREGDVDWRCPNSQKCPAQVAARIKYLADRGRF 461

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IE LG++  +   +S      +     +F L       T+      G  + +   L  +
Sbjct: 462 DIEALGEKAAEDLVRS----GVLVDEGGLFNLTEADLLRTSIYTTKKGTLNATGKKLLKN 517

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   ++  L R + SL IR VG   +R+LA  Y S           IA            
Sbjct: 518 LETAKHTDLWRVMASLSIRMVGNTASRALASRYRSLDALRAATVEDIAET---------- 567

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG ++AQ+  ++++   +   V+   K                +    +V TG+L+  
Sbjct: 568 EGVGLVMAQSFKDWFEVQWHCDIVDQWAKSGVTVEDDASDRPEQVLAGLTVVVTGSLEGF 627

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R  A+E +   G   S  +S+KTD ++VG+  GSK +KA+ LG+ I++E  F+ LL 
Sbjct: 628 TRDSAKEAIISRGGKASGSVSKKTDYVVVGEKAGSKEQKARDLGLTILDEAGFVQLLA 685


>gi|160934306|ref|ZP_02081693.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753]
 gi|156866979|gb|EDO60351.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753]
          Length = 661

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/710 (31%), Positives = 362/710 (50%), Gaps = 51/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +E ARK    L ++++YH   YY+   P I D EYD + R  + I  A+P+L      
Sbjct: 1   MDLENARKSAEELRKKLNYHAKKYYEEDNPEITDYEYDMMLRELEGIELAYPELVTE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG        VTH +P  SL   ++ E+L  F  ++     K     + + +E
Sbjct: 58  DSPTQRVGGAALNKFTPVTHEVPMESLHDSFSEEELFDFDRKVREVVPK-----VSYVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  +++ Y  G FV  + RGDG  GEDV+  +R I TIP+ L+  +P  +EVRGEV
Sbjct: 113 PKFDGLSVSLEYRNGIFVRGSTRGDGSVGEDVTENLRTIKTIPKKLTRAVP-FLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+S   FL L +       KP+ NPRNAA+G LR+ +      R L+ +V  + +   + 
Sbjct: 172 YMSNESFLKLLERQELNEEKPFKNPRNAAAGSLRQKDSRITAQRELDIYVFNIQQIEGVV 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF         +    +V     +   R    + +DG V KV+ F 
Sbjct: 232 LNTHKESLDYLTELGFHTPPFYNCYDDMDDVVKEIQRIGEQRGGFSFPVDGAVIKVNAFH 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ +G  ++ P+W  + K+  ++  T LLDI+I +GRTG+LTP    EPV + G  ++ 
Sbjct: 292 DRELIGSTSKFPKWAEAFKYPPEEKETALLDIEINVGRTGVLTPTGLFEPVLLAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+IK            +DIR+GD V++++AGE+IP+VV +  ++  PD++P+  
Sbjct: 352 ATLHNEDFIK-----------EKDIRIGDTVVLRKAGEIIPEVVSVKAHK--PDSKPYQM 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S+V R+         AA RC     C AQ L  L HFVSRDA ++EGLG   
Sbjct: 399 PEHCPSCGSKVQREPGE------AALRCDNT-QCPAQLLRHLIHFVSRDAMDMEGLGPAV 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+     +     +  P D+++L +       ++      G+ S  NL +++ K +    
Sbjct: 452 LEQLVAHQ----LVSSPVDLYSLNKEALVDLERM------GEKSAENLLNAVEKSKGNDF 501

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI++LGIRH+G   A+ L + + +     +     IA           +   G I+A+
Sbjct: 502 YRFIYALGIRHIGLRAAKLLTQRFPTIDQILKAPPEEIAA----------IDGFGQIMAE 551

Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +   ++  P     +++   + V+      E++       K  V TG L    R +A + 
Sbjct: 552 SAAYYFSLPETRKLIDSFRTKGVNLESFEKEESKDLRFSGKTFVLTGALPTYTRAEAGKM 611

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +   G  VS+ +S+KT  ++ G+  GSKL KAQ+LGV I++EE+FL +LQ
Sbjct: 612 IEDRGGKVSSSVSKKTSFVLAGEEAGSKLTKAQKLGVPIISEEEFLAMLQ 661


>gi|302023934|ref|ZP_07249145.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05HAS68]
 gi|330832985|ref|YP_004401810.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3]
 gi|329307208|gb|AEB81624.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3]
          Length = 652

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/702 (30%), Positives = 362/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +S L   ++ +   YYQ  +P + D+EYD L R    +  A P+L     P+ P ++
Sbjct: 2   KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+M     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG 
Sbjct: 59  VGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRK-----EFPQATYICELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  +P  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAV--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N +    G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q +
Sbjct: 172 FDRVNKQRQEAGEAEFANPRNAAAGTLRQLDTGVVAQRGLATFLY--QEASPSEATSQSQ 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+K+  LGF  N+    A +      +  ++   R  LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 VLEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW +++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++   R         PS CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQE-IMPIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS +    +        A RC   + C +Q + +L+HF SRDA NI GLG   ++  F 
Sbjct: 398 CQSDLQHYEDE------VALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L      +        GF + S   LY +I   ++ S E  +F 
Sbjct: 450 ---GAGLVHDVADIYKLTVDDLLTLE------GFKEKSADKLYQAIQTSKSNSAECLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ ++ L + +   +  A      IA           +  +G +IA+++  F+
Sbjct: 501 LGIRHVGSKASKILVEKFGDLETLAFADQEAIA----------SLEGLGQVIAKSLTTFF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            +      +      +V+ +      + ++ +    +V TG L++++R++A+  +  LGA
Sbjct: 551 ASEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KT++++ G + GSKL KAQ+LG++I +E     L
Sbjct: 611 NVAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL 652


>gi|145295383|ref|YP_001138204.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum R]
 gi|166215581|sp|A4QDK5|DNLJ_CORGB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|140845303|dbj|BAF54302.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 680

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/721 (29%), Positives = 355/721 (49%), Gaps = 52/721 (7%)

Query: 12  LSIEQARKE--LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++ + A+     + L +++ YH D YY   +P I D+++DAL ++   +    P+LA   
Sbjct: 1   MTEDNAQLRRTWNDLAEKVRYHRDRYYNE-QPEIPDADFDALFKQLQQLEEDHPELAV-- 57

Query: 70  DPNGPLNKIGGEMNL--SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            P+ P   +G  +    S   V H    LSL+ +++ ++LR ++ R           +  
Sbjct: 58  -PDSPTMVVGAPVAEQSSFDNVEHLERMLSLDNVFDEQELRDWLGRT---------PAKQ 107

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPE 183
           +  E KIDG  I + Y  G+   AA RGDG  GED++A  R I  IP  L       +P 
Sbjct: 108 YLTELKIDGLSIDLVYRNGQLERAATRGDGRVGEDITANARVIEDIPHQLQGTDEYPVPA 167

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
           ++E+RGEV+I+  DF  +N + IA G KP+ANPRNAA+G LR+ N  D+  R L    HG
Sbjct: 168 VLEIRGEVFITVEDFPEVNAQRIADGGKPFANPRNAAAGSLRQKNIEDVKKRRLRMISHG 227

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +G T       Q++    +   G P +           +V   +     R    +++DGL
Sbjct: 228 IGFTEGFSPASQHDAYLALAAWGLPTSPYTEAVTDPEDVVKKVSYWADHRHDALHEMDGL 287

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD+ + Q+ LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV 
Sbjct: 288 VIKVDDIASQRALGSTSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVL 347

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ ++ ATLHN+  +K            + + +GD V++++AGEVIP+V+  +V  R 
Sbjct: 348 VAGSTVSMATLHNQSEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVELRD 396

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + + FP+ CP C +R+               RC    +C  Q   RL +   R AF+
Sbjct: 397 GTEREYIFPTLCPECGTRL-----APAKADDVDWRCPNMQSCPGQLSTRLTYLAGRGAFD 451

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IE LG++  +   ++      +   + +F L      S+       G  + S   L D++
Sbjct: 452 IEALGEKGAEDLIRT----GILLDESGLFDLTEDDLLSSNVYTTNAGKVNASGKKLLDNL 507

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +   L R + +L IRHVG   AR+LA  Y S Q         ++             
Sbjct: 508 QKSKQTDLWRVLVALSIRHVGPTAARALAGRYHSIQALIDAPLEELSET----------D 557

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG IIAQ+  ++++   +   V+              +     +E   +V TG L+   
Sbjct: 558 GVGTIIAQSFKDWFEVDWHKAIVDKWAAAGVTMEEEVGEVAEQTLEGLTIVVTGGLEGFT 617

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R   +E +   G   S  +S+KTD ++VG+N GSK  KA++LG++I++E  F+ LL   +
Sbjct: 618 RDSVKEAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLRILDEAGFVRLLNTGS 677

Query: 723 T 723
            
Sbjct: 678 A 678


>gi|209559128|ref|YP_002285600.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes NZ131]
 gi|254781429|sp|B5XKP3|DNLJ_STRPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|209540329|gb|ACI60905.1| DNA ligase [Streptococcus pyogenes NZ131]
          Length = 652

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/702 (30%), Positives = 358/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVKA-----EFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS   P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+     G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q E
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTAVVAKRELATFLY--QEASPTARNQQNE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F 
Sbjct: 398 CGSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F 
Sbjct: 450 ---LAGFVHDVADIYQLTK------ENFMQLDGIKEKSADKLLAAIEASKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G++++R + + Y             IA          R+  +G  IAQ++ +++
Sbjct: 501 LGIRHIGSKVSRLILEVYGDISALLTAKEEEIA----------RIDGLGSTIAQSLTQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +       V+      V+      + N  + +    +V TG L ++ R++A++ +  LGA
Sbjct: 551 EQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 611 KVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652


>gi|313123177|ref|YP_004033436.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279740|gb|ADQ60459.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 671

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/716 (29%), Positives = 366/716 (51%), Gaps = 51/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+P+L   + 
Sbjct: 2   AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPEL---KS 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +    ++GGE+N  L KV H +P LS+  +++ E+L +F  R+ +       + + + +
Sbjct: 59  ADSITQRVGGEVNSDLPKVEHQVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YE+G+   A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE
Sbjct: 115 ELKIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
            Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++        
Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPP-A 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+ 
Sbjct: 232 GIDSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDL 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ  LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G  + 
Sbjct: 292 ALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGTTVA 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+ 
Sbjct: 352 RASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYE 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C   +V            A RC    +C AQ  E + HF SR A NI GLG +
Sbjct: 401 VPTKCPSCGEDLVHLNEE------VALRCINP-SCPAQIEEGITHFASRQAMNIAGLGPK 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +      +     +   AD++ L             +  F + S+ NL  +I++ R  S
Sbjct: 454 IVKQLIAKD----LVHNVADLYYLTADDL------SQLEHFKEKSINNLLAAIDQSRKNS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E  +F LGI +VG + A+ +A+ + +    A          +     L  +  +G  IA
Sbjct: 504 VELVLFGLGIDNVGRKAAQLIAQKFKNMSKIA----------SASVQELTAIDTIGMTIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +++  ++Q       +  L +       +G   +   +  + K +V TG L    R +  
Sbjct: 554 ESLTAYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFT 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + +  LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T
Sbjct: 614 KKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669


>gi|76787534|ref|YP_329595.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae A909]
 gi|123771969|sp|Q3K1K8|DNLJ_STRA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76562591|gb|ABA45175.1| DNA ligase, NAD-dependent [Streptococcus agalactiae A909]
          Length = 652

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/700 (31%), Positives = 362/700 (51%), Gaps = 53/700 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L   ++ +   YY    P + DS+YD L R    +    P+      PN P +++G
Sbjct: 4   RMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNSPTHRVG 60

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG  +
Sbjct: 61  GLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVKA-----EFPTAAYMAELKIDGLSV 115

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  F 
Sbjct: 116 SLTYVNGVLQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFE 173

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
           A+N E  A G + +ANPRNAA+G LR+LN   +  R L  F++   + S    + Q ++L
Sbjct: 174 AINIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLY--QEASPTQKETQDDVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG  
Sbjct: 232 KELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C 
Sbjct: 352 I-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPSCG 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S +V            A RC   L C  Q  ERL HF SRDA NI G G   ++  F   
Sbjct: 400 SELVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD-- 450

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  I   ADI+ L      +        G  + S T +Y +I   +  S E+ +F LG
Sbjct: 451 --AHLIADVADIYRLSIENLLTLD------GIKEKSATKIYHAIQSSKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ +R L + + + +  +Q     IA           +  +G +IA+++  F++ 
Sbjct: 503 IRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIAKSLHTFFEK 552

Query: 619 PRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                 +E      V+ +      +  +++    +V TG L+K+ R++A+E +  LGA V
Sbjct: 553 EEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 613 TGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652


>gi|240080125|ref|ZP_04724668.1| putative DNA ligase [Neisseria gonorrhoeae FA19]
 gi|240117363|ref|ZP_04731425.1| putative DNA ligase [Neisseria gonorrhoeae PID1]
 gi|260441105|ref|ZP_05794921.1| putative DNA ligase [Neisseria gonorrhoeae DGI2]
          Length = 823

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/845 (29%), Positives = 388/845 (45%), Gaps = 171/845 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG V 
Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF- 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYR 517

Query: 512 ----TLQRRQQT------------------STTKIENILGFGD--VSVTNLYDSINKRRN 547
               TLQ+ ++T                    +K     G         N+   I   + 
Sbjct: 518 IDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKT 577

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------ 583
             L RF+F+LGIRHVG   A++LA+ + + +   +                         
Sbjct: 578 PELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFA 637

Query: 584 -------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE----- 614
                  I+ ++A         + +P                  + +  AQA+ E     
Sbjct: 638 QAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQS 697

Query: 615 ----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLV 653
                           +    +N   +E L    +      E    S      +  K  V
Sbjct: 698 IEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFV 757

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E +
Sbjct: 758 LTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAE 817

Query: 714 FLFLL 718
            L LL
Sbjct: 818 LLTLL 822


>gi|116630136|ref|YP_815308.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323]
 gi|122272927|sp|Q041K2|DNLJ_LACGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116095718|gb|ABJ60870.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323]
          Length = 668

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/716 (29%), Positives = 368/716 (51%), Gaps = 52/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  QA +++  L +++    + YY    P++ D+ YD   +    +   FPDL  S
Sbjct: 1   MAVLTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTS 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       + + +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +     Q++ + +M  LGF  N   ++  +   +  + +E  + R+ L Y IDG+V KVD
Sbjct: 232 KN-ITSQHQAIDEMNRLGFHTNQTGQRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +
Sbjct: 291 DLSLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LHN DY++            + +R+GD V + +AG++IP++  +++N+R  D++P
Sbjct: 351 VSRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YQIPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            +   AD++ L   Q         +  F D S+TNL  SI   + 
Sbjct: 453 PRIVKQLIDKN----FVNDVADLYHLTNEQL------SQLDHFKDKSITNLLTSIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S E  +F LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ 
Sbjct: 503 NSAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGET 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRH 664
           IA+++  ++  P     ++ L              E+   +  + K +V TG L    R 
Sbjct: 553 IAESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSDFTRS 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 613 EFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|223932796|ref|ZP_03624793.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591]
 gi|223898505|gb|EEF64869.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591]
          Length = 652

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/702 (30%), Positives = 362/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +S L   ++ +   YYQ  +P + D+EYD L R    +  A P+L     P+ P ++
Sbjct: 2   KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+M     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG 
Sbjct: 59  VGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRK-----EFPQATYICELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  +P  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAV--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N +    G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q +
Sbjct: 172 FDRVNKQRQEAGEAEFANPRNAAAGTLRQLDTGVVAQRGLATFLY--QEASPSEATSQSQ 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+K+  LGF  N+    A +      +  ++   R  LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 VLEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW +++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++   R         PS CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQE-IMPIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS +    +        A RC   + C +Q + +L+HF SRDA NI GLG   ++  F 
Sbjct: 398 CQSDLQHYEDE------VALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L      +        GF + S   LY +I   ++ S E  +F 
Sbjct: 450 ---GAGLVHDVADIYKLTVDDLLTLE------GFKEKSADKLYQAIQTSKSNSAECLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ ++ L + +   +  A      IA           +  +G +IA+++  F+
Sbjct: 501 LGIRHVGSKASKILVEKFGDLETLAFADQEAIAL----------LEGLGQVIAKSLTTFF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            +      +      +V+ +      + ++ +    +V TG L++++R++A+  +  LGA
Sbjct: 551 ASEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KT++++ G + GSKL KAQ+LG++I +E     L
Sbjct: 611 NVAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL 652


>gi|324991571|gb|EGC23504.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK353]
          Length = 652

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/702 (32%), Positives = 362/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q E
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQADSQEE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +    PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEALEVPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYTAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAAADAVLSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL+KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGQDAGSKLDKAQELGIEIRDEDWLDSL 652


>gi|22537014|ref|NP_687865.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae 2603V/R]
 gi|81454504|sp|Q8E084|DNLJ_STRA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|22533870|gb|AAM99737.1|AE014230_17 DNA ligase, NAD-dependent [Streptococcus agalactiae 2603V/R]
          Length = 652

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/700 (31%), Positives = 362/700 (51%), Gaps = 53/700 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L   ++ +   YY    P + DS+YD L R    +    P+      PN P +++G
Sbjct: 4   RMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNSPTHRVG 60

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG  +
Sbjct: 61  GLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVKA-----EFPTAAYMAELKIDGLSV 115

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  F 
Sbjct: 116 SLTYVNGVLQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFE 173

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
           A+N E  A G + +ANPRNAA+G LR+LN   +  R L  F++   + S    + Q ++L
Sbjct: 174 AINIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLY--QEASPTQKETQDDVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG  
Sbjct: 232 KELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSIAMQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C 
Sbjct: 352 I-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPSCG 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S +V            A RC   L C  Q  ERL HF SRDA NI G G   ++  F   
Sbjct: 400 SELVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD-- 450

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  I   ADI+ L      +        G  + S T +Y +I   +  S E+ +F LG
Sbjct: 451 --AHLIADVADIYRLSIENLLTLD------GIKEKSATKIYHAIQSSKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ +R L + + + +  +Q     IA           +  +G +IA+++  F++ 
Sbjct: 503 IRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIAKSLHTFFEK 552

Query: 619 PRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                 +E      V+ +      +  +++    +V TG L+K+ R++A+E +  LGA V
Sbjct: 553 EEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 613 TGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652


>gi|326403263|ref|YP_004283344.1| DNA ligase [Acidiphilium multivorum AIU301]
 gi|325050124|dbj|BAJ80462.1| DNA ligase [Acidiphilium multivorum AIU301]
          Length = 682

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/705 (37%), Positives = 401/705 (56%), Gaps = 40/705 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               +  L+ L + ++  D  YY+   PI+ D+ YDAL+R   ++  A PDLA + D   
Sbjct: 11  PANPKARLAELIERLAAADAAYYRDDAPIMDDAAYDALRREAASLRAAHPDLAAALD--- 67

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G   + +  KV H IP LSL+ ++   D  +F   I RF        + F  EPK
Sbjct: 68  ---QVGTTPSGAFGKVRHRIPMLSLDNVFEPADFVEFCASIRRFLGL-GTAPLAFVAEPK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++ YE  +FV  A RGDG  GEDV+  +R +  +P  L  + P+ IE+RGEVY+
Sbjct: 124 IDGLSISLTYENRRFVRGATRGDGTEGEDVTENLRTLRELPATLPDDAPDFIEIRGEVYM 183

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           +K DF+ALN          +ANPRNAA+G LR+L+P    +R L+ F +  G +SE   +
Sbjct: 184 TKTDFIALNQGQARQ----FANPRNAAAGSLRQLDPAVTASRRLSLFAYARGASSEAVGE 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++ L  +R  GFPVN    +  +      +   +   R+ L YDIDG+VYK+D+ +LQ
Sbjct: 240 THWDYLATLRRWGFPVNPLAERV-SEAAAEPFQRSIGERRAGLDYDIDGVVYKIDDLALQ 298

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   R+PRW ++ KF  ++A T L  IDIQ+GRTG LTP ARL+PVN+GG L+++AT
Sbjct: 299 ERLGFAGRAPRWAVAWKFPAERALTTLRGIDIQVGRTGALTPRARLDPVNVGGVLVSHAT 358

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +D+R+GD V ++RAG+VIP+++  +   R  D+ PF FP 
Sbjct: 359 LHNEDEIAR-----------KDVRIGDTVELQRAGDVIPQILRALPERRPADSVPFVFPD 407

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C +  +R             RCTGGL+C AQ +ERL HF SR AF+IEG+G++ + 
Sbjct: 408 HCPACGALAIRPAGE------VVRRCTGGLSCPAQVVERLIHFCSRLAFDIEGMGEKTVQ 461

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         +  PADIFTL+ R+      I  + G+G+VS   L  +I+ RR ISL R
Sbjct: 462 EFH----GLGWLESPADIFTLRDREAA----IAALEGWGEVSARKLIAAIDARRRISLAR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGIR +G + A+ LA++Y SY  + +++       +D  L L  +  +G  IA+ +
Sbjct: 514 FIYALGIRRIGEQNAKLLARHYSSYAVWRRQMEEAGVIGSDARLELGSISGIGPSIAEEL 573

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             F+  P N   ++ L+  ++  I          +  K +VFTGTL+ + R +A+     
Sbjct: 574 AGFFAEPHNRDLLDRLVPILT--IEDEVAAAGGALAGKTIVFTGTLESLTRPEAKARAEA 631

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           LGA V+  +S+KTD ++VG + GSK  KA  LGV +++E +F  L
Sbjct: 632 LGARVTESVSKKTDFVVVGADAGSKAAKATSLGVTVLSEAEFRSL 676


>gi|255281707|ref|ZP_05346262.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
 gi|255267774|gb|EET60979.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
          Length = 674

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/708 (29%), Positives = 354/708 (50%), Gaps = 48/708 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++E  ++++  L + + YH D YY    P I D EYD +     ++    P+L     P 
Sbjct: 4   TVETIQQKIEELRKTLEYHSDRYYNQDNPEISDYEYDQMMLELKSLEKEHPELI---TPE 60

Query: 73  GPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P   +GG         V H +P LSL  +++ E++  F+  +          +  F +E
Sbjct: 61  SPTQHVGGTAKREAGVLVKHRVPMLSLADVFSREEVDAFVQDMQA-----QFGNPEFVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
            KIDG  + +RY  G    A  RGDG   GEDV+   R I  +   L   IP  +E+RGE
Sbjct: 116 TKIDGLSMALRYTDGVLTTAITRGDGIIQGEDVTENARVIKDVKTRLKHPIP-YLEIRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           VY++   F  +N++   +G+K +ANPRN A+G LR+L+      R L+ FV  + +T   
Sbjct: 175 VYMTDAAFEKVNEKQELLGKKLFANPRNCAAGTLRQLDSRITKERELSLFVFNIQETQGR 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E  + ++  G  V +  +   T   + +   E+ S+R  L YDIDG V K++  
Sbjct: 235 EFTTHTEGYEYLKSNGIRVIDHYKVCRTADEVWNAIEEIGSMRGELGYDIDGAVVKLNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + +  +G  ++ PRW +++K+  ++  + LLDI++ +GRTG +TP A  EPV + G  ++
Sbjct: 295 AQRAIVGATSKVPRWAVAYKYPPEEKESVLLDIELSVGRTGRITPTAVFEPVRLCGTSVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D+I  L           DI +GD ++V ++GE+IPK+  +   +R   A+ F 
Sbjct: 355 RATLHNQDFIDDL-----------DICIGDTIVVYKSGEIIPKIRAVKKEKRPQGAKRFR 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C +  VR+      K  A  RCTG   C AQ    + +FV RDA +I+G G  
Sbjct: 404 IPDVCPVCGAPAVRE------KDTADIRCTGS-NCPAQLERHIINFVGRDAMDIKGFGAN 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    +       ++  ADIF+L+  ++    +   I+G  + +   L  +I   +   
Sbjct: 457 YIIELVR----LGYLKNVADIFSLKEHREELIEQ--GIIG-KEKNTDKLLKAIEDAKANQ 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +  LGI+ VG   ARSL  ++ + +  A      +            V  +G I A
Sbjct: 510 PDRLLTGLGIQGVGKATARSLMSHFGTIEKLAGASQEELE----------SVSDIGSISA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +AI  ++  P N   +E L ++   ++   ++   +    K  V TGTL  + R +A   
Sbjct: 560 EAIRSYFAEPDNRRLLEKL-RDAGVNMEAEQEEAGTVFAGKTFVVTGTLPTMGRSEAVSL 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + +LG   +  +S+KT  ++ G+N GSKL KAQQLG+ +++E +FL +
Sbjct: 619 IQKLGGKAAGSVSKKTSYVLAGENAGSKLTKAQQLGIPVIDEAEFLEM 666


>gi|325684644|gb|EGD26799.1| NAD-dependent DNA ligase LigA [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 671

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/716 (29%), Positives = 366/716 (51%), Gaps = 51/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+P+L   + 
Sbjct: 2   AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPEL---KS 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +    ++GGE+N  L KV H +P LS+  +++ E+L +F  R+ +       + + + +
Sbjct: 59  ADSITQRVGGEVNSDLPKVEHQVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YE+G+   A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE
Sbjct: 115 ELKIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
            Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++        
Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPP-A 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+ 
Sbjct: 232 GIDSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDL 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ  LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G  + 
Sbjct: 292 ALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGTTVA 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+ 
Sbjct: 352 RASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYE 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C   +V            A RC    +C AQ  E + HF SR A NI GLG +
Sbjct: 401 VPTKCPSCGEDLVHLNEE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPK 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +      +     +   AD++ L             +  F + S+ NL  +I++ R  S
Sbjct: 454 IVKQLIAKD----LVHNVADLYYLTADDL------SQLDHFKEKSINNLLAAIDQSRKNS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E  +F LGI +VG + A+ +A+ + +    A          +     L  +  +G  IA
Sbjct: 504 VELVLFGLGIDNVGGKAAQLIAQKFKNMSKIA----------SASVQELTAIDTIGMTIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +++  ++Q       +  L +       +G   +   +  + K +V TG L    R +  
Sbjct: 554 ESLTAYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFT 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + +  LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T
Sbjct: 614 KKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669


>gi|322385709|ref|ZP_08059353.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100]
 gi|321270447|gb|EFX53363.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100]
          Length = 652

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/702 (32%), Positives = 366/702 (52%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELMAFDQRIRK-----EFPQVSYICELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q E
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQAGSQEE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  L F VN     A++  G+  +  ++   R +L Y+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLASLDFSVNPIHFLADSIDGVWEFIEKIAQERDSLSYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +    PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEALEIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKVFD 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L      +        GF + S   LY++I   +  S E+ +F 
Sbjct: 451 KN----LVKDVAGIYRLSVEDLLTLD------GFKEKSANKLYNAIQASKENSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     I+           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILMEKFHDMIKLSQASQEEIS----------SIDSLGTVIAQSLHSYF 550

Query: 617 QNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +   +   +  L +  V+      +    + +  K +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQLLLRELQEAGVNLDYLGEKVAADAALAGKTVVLTGKLQKLTRNQAKEKLLSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVAGSVSKKTDLVVAGTDAGSKLTKAQELGIEIRDEDWLDSL 652


>gi|225025741|ref|ZP_03714933.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
           23834]
 gi|224941522|gb|EEG22731.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
           23834]
          Length = 778

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/802 (31%), Positives = 380/802 (47%), Gaps = 131/802 (16%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L Q ++ +   YY    P + D+EYD L R  +A+    P       P  P  +
Sbjct: 5   QQRIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELEALEAEHPQFRL---PESPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKKDDNSIF 127
           +GG +      V H++P LSL   ++            +   F  R+ +         + 
Sbjct: 62  VGGAVLDGFETVVHAVPMLSLNNAFSPRDDETGAFDHAEFLAFDERVCKELG---VAQVE 118

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           +  EPK DG  +++ Y+ G  V AA RGDG +GE+V+  I+ +  IP  L     P ++E
Sbjct: 119 YAAEPKFDGLAVSLLYQNGILVQAATRGDGTTGENVTENIKTVRNIPLRLHGEKQPALLE 178

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN   +  G+KP+ANPRNAA+G LR+L+      R L+FF +G+ +
Sbjct: 179 VRGEVLMLKADFAALNQRQLEAGQKPFANPRNAAAGSLRQLDSKITAQRKLHFFAYGIAQ 238

Query: 246 TSEI--FAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            S +    +   E L  +  +GF +  G   A      ++  Y  +   R  LPY+IDG+
Sbjct: 239 LSGVERLPESHMEELALLHEIGFSLPKGYFGAYTGAAAVLREYERLAEHRPRLPYEIDGM 298

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+  + Q+QLG  +R+PRW I+HKF  ++A T +  ID+Q+GRTG +TPVARL PV 
Sbjct: 299 VVKVNSLAEQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGAVTPVARLAPVF 358

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +++  R 
Sbjct: 359 VGGVTVTNATLHNQDEVAR-----------KDVRVGDTVVVRRAGDVIPEVVRVLLERRP 407

Query: 423 PD------------AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
                          +PF  P  CP+C S V R+         A  RCTGG+ C AQ+ +
Sbjct: 408 MQPVDLLGEQMEPLHEPFRLPETCPVCGSAVEREAGE------AVARCTGGMLCQAQRAQ 461

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            L HF SR A +I GLG +Q++        A  +   ADI+ L   +  +    ++    
Sbjct: 462 GLIHFASRKAMDIAGLGDKQIEALV----AADVLHSFADIYRLDIAKLQTIKDGKS---A 514

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK------------------ 572
                 N+ DSI + R   L RF+F+LGIRHVG   A+ LA                   
Sbjct: 515 ATKWAQNILDSIAQSRTPPLARFLFALGIRHVGESTAKQLAAAFGNLDTVRRAPEPILAC 574

Query: 573 -------------YYLSYQNFAQEINNIIAH--------------NNDDWLSLIRVPLV- 604
                        +Y       + +++++ H              N      L R+P + 
Sbjct: 575 LPDIGSVVAHAIAHYFRQPAQQKMLDDLLQHVAPQAAAPSPQTRANAAPEQWLQRLPNIK 634

Query: 605 -------------GDIIA--------QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
                        G + A        Q    + + P +   ++ +             NV
Sbjct: 635 LSEKRAAELWQLAGSLHALQTDQALPQEWQNWRRQPAHAALLQEITAFTEALPESSTDNV 694

Query: 644 SS-------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
           S         I  K  V TGTL  ++R +A   +   G  VS  +S+KTD ++ G+  GS
Sbjct: 695 SGSLHPENHPIAGKTFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFVVAGEAAGS 754

Query: 697 KLEKAQQLGVKIMNEEQFLFLL 718
           KLEKAQ LGV +++EE+ L +L
Sbjct: 755 KLEKAQALGVAVLSEEELLGML 776


>gi|319744895|gb|EFV97229.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae ATCC 13813]
          Length = 652

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/700 (31%), Positives = 365/700 (52%), Gaps = 53/700 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L   ++ +   YY    P + DS+YD L R    +    P+      PN P +++G
Sbjct: 4   RMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHRVG 60

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG  +
Sbjct: 61  GLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVKA-----EFPTASYMAELKIDGLSV 115

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  F 
Sbjct: 116 SLTYVNGILQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFE 173

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
           A+N E  A G + +ANPRNAA+G LR+LN   +  R L  F++   + S    + Q ++L
Sbjct: 174 AINIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLY--QEASPTQKETQDDVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG  
Sbjct: 232 KELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C 
Sbjct: 352 I-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPSCG 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S +V   +        A RC   L C  Q  ERL HF SRDA NI G G   ++  F   
Sbjct: 400 SELVHFEDE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD-- 450

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  I   ADI+ L      S   +  + G  + S T +Y +I   +  S E+ +F LG
Sbjct: 451 --AHLIADVADIYRL------SIEDLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ +R L + + + +  +Q     IA           +  +G +IA+++  F++ 
Sbjct: 503 IRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIAKSLHTFFEK 552

Query: 619 PRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                 +E      V+ +      +  +++    +V TG L+K+ R++A+E +  LGA V
Sbjct: 553 EEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 613 TGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652


>gi|55981066|ref|YP_144363.1| DNA ligase [NAD+] [Thermus thermophilus HB8]
 gi|118780|sp|P26996|DNLJ_THET8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]; AltName: Full=Tth DNA ligase
 gi|94721|pir||A40363 DNA ligase (NAD) (EC 6.5.1.2) - Thermus aquaticus
 gi|155088|gb|AAA27486.1| DNA ligase [Thermus thermophilus]
 gi|155090|gb|AAA27487.1| DNA ligase [Thermus thermophilus]
 gi|55772479|dbj|BAD70920.1| DNA ligase [NAD+] [Thermus thermophilus HB8]
          Length = 676

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/714 (33%), Positives = 382/714 (53%), Gaps = 55/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK ++ L   I YH+  YY  + P I D+EYD L R    +   FP+L   + P
Sbjct: 1   MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEL---KSP 57

Query: 72  NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G     +    V H     SL+  +N+++L+ F  RI R   +K      +T+
Sbjct: 58  DSPTLQVGARPLEATFRPVRHPTRMYSLDNAFNLDELKAFEERIERALGRK--GPFAYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  VY A RGDG  GE+V+  +  IPTIPR L   +PE +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLK-GVPERLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG----K 245
           VY+    FL LN+E+   G + + NPRNAA+G LR+ +P     R L    + LG    +
Sbjct: 175 VYMPIEAFLRLNEELEERGERIFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLGLEE 234

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q+ +L  ++  GFPV +G  +A    G+ + Y +    R  LP++ DG+V K
Sbjct: 235 VEREGVATQFALLHWLKEKGFPVEHGYARAVGAEGVEAVYQDWLKKRRALPFEADGVVVK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +DE +L ++LG  AR+PR+ I++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV + G
Sbjct: 295 LDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFLEG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  + 
Sbjct: 355 SEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEE 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P  +P  CP C  R++++           HRC   L C A++ E ++HF SR A +I+G
Sbjct: 404 RPIRWPETCPECGHRLLKE--------GKVHRCPNPL-CPAKRFEAIRHFASRKAMDIQG 454

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ ++   +       ++  AD++ L++       ++      G+ S  NL   I + 
Sbjct: 455 LGEKLIERLLEK----GLVKDVADLYRLRKEDLVGLERM------GEKSAQNLLRQIEES 504

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   LER +++LG+  VG  +AR+LA  + +     +     +    +            
Sbjct: 505 KKRGLERLLYALGLPGVGEVLARNLAARFGNMDRLLEASLEELLEVEEVGE--------- 555

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            + A+AI+E  ++P     V  L +       + +      ++    V TG L +  R +
Sbjct: 556 -LTARAILETLKDPAFRDLVRRLKEAGVEMEAKEK--GGEALKGLTFVITGELSRP-REE 611

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  + EE+   LL+
Sbjct: 612 VKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLE 665


>gi|306829554|ref|ZP_07462744.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249]
 gi|304428640|gb|EFM31730.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249]
          Length = 652

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/701 (30%), Positives = 362/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYASEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKELPHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGATRGDGSIGENITENLKRVKDIPLTLPEKL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DLVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A +   I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKHLEQLGFVVNPKRILAESMDEIWNFIQEVGQEREHLPYDIDGVVIKVNDLAGQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S+++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 DSQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L+              G  + S + LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLKEDDFLLLE------GVKEKSASKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ + +N AQ           D   +  +  +G +IAQ +  ++ 
Sbjct: 502 GIRHVGSKASQLLLQHFHTIENLAQA----------DPEEVASIESLGSVIAQGLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   ++     EV+ +         + +    +V TG L+++ R +A+  +  LGA 
Sbjct: 552 TEGSKILLDELKEAEVNLAYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVAGTDAGSKLQKAQELGIEVRDEAWLESL 652


>gi|325687188|gb|EGD29210.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK72]
          Length = 652

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/702 (32%), Positives = 361/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q E
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQADSQEE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +    PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEALEVPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNIAGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYTAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|296876694|ref|ZP_06900742.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           15912]
 gi|296432196|gb|EFH17995.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           15912]
          Length = 652

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/702 (31%), Positives = 359/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ +   YY    P + DSEYD L R    +  A PD      P  P ++
Sbjct: 2   KTRMKELVELLNRYAYEYYTKDTPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+ +     + +SI +  E KIDG 
Sbjct: 59  VGGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRVRK-----EFSSISYVCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GED++  ++ +  IP VL    P  I VRGE Y+ +  
Sbjct: 114 SISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPE--PVNITVRGECYMPRAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q  
Sbjct: 172 FDRVNQIRQENGEPEFANPRNAAAGTLRQLDTKIVAKRNLATFLY--QEVSPTDQSSQEG 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+K+  LGF VN     A     I  +  ++  +R  LPYDIDG+V KV++ ++Q++LG
Sbjct: 230 VLEKLARLGFVVNQERVLAEDMEQIWEFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W +++KF  ++   ++L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DI   D V+V +AG++IP V+ ++ ++R  D Q  + P+ CP 
Sbjct: 350 DYI-----------AEKDIHQDDTVIVYKAGDIIPAVLRVVKDKRVSD-QALAIPTQCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CQSELLHFEDE------VALRCINPL-CPAQMKEGLNHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     +   A I+ L      +        GF + S   LY++I   +  S E+ +F 
Sbjct: 451 AQ----LVEDVAGIYRLTVEDLLTLE------GFKEKSAEKLYEAIQASKENSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG+++++ L + +      A      IA           +  +G ++A+++  ++
Sbjct: 501 LGIRHVGSKVSQILLQEFHDIDQLATADPERIA----------SIDSLGMVVAESLKSYF 550

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
               +   ++ L +     +   EK  +   +    +V TG L+++ R +A+  +  LGA
Sbjct: 551 AQEGSKRLLQELKEASVNMVYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLESLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD+++ G + GSKL KAQ+LG+++ +E     L
Sbjct: 611 KVTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDEAWLESL 652


>gi|331266328|ref|YP_004325958.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5]
 gi|326683000|emb|CBZ00617.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5]
          Length = 652

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/701 (30%), Positives = 359/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +   +       +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKELPQP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I  +  E++  R  LPYDIDG+V KV+  + Q++LG 
Sbjct: 231 LKHLEQLGFVVNPKRILAENIDEIWDFIQEVEQERDNLPYDIDGVVIKVNNLAGQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R    +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKR-ISEEKLDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S+++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 DSQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAT 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L+              G  + S + LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLKEEDFLLLE------GVKEKSASKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IAQ++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIKNLAQA----------DPEEVASIESLGSVIAQSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   ++      V+           + +    +V TG L+++ R +A+  +  LGA 
Sbjct: 552 TEGSKILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KT++++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLEGL 652


>gi|302522063|ref|ZP_07274405.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78]
 gi|302430958|gb|EFL02774.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78]
          Length = 783

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/746 (28%), Positives = 355/746 (47%), Gaps = 63/746 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           EA      R+E   + +E+  H   YY   +P++ D+++D L RR  A+    P L    
Sbjct: 29  EAAVPADVREEHDGIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---R 85

Query: 70  DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            P+ P  K+ G+         V H    LSL+ +++ E L  +  R+ +       +   
Sbjct: 86  TPDSPTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAKEIGAPGYH--- 142

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           +  E K+DG  + + YE G+   AA RGDG  GED++  +R I  IP  L+ + +PE++E
Sbjct: 143 YLCELKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVE 202

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY    DF ALN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G 
Sbjct: 203 VRGEVYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGA 262

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                        + +   G P     +  ++  G+ S+       R ++ ++IDG+V K
Sbjct: 263 REGFTIDRLSHAYELLHEWGLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDGVVVK 322

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +DE  LQ +LG  +R+PRW  + KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G
Sbjct: 323 LDEIPLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAG 382

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    
Sbjct: 383 SEVEFATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSE 431

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F  P+ CP C + +         +     RC    +C AQ  ER+ +   R + +IE 
Sbjct: 432 HAFVMPAECPECGTPL-----RAMKEGDIDLRCPNARSCPAQLRERIFYLAGRKSLDIEH 486

Query: 486 LGKQQLDFFFKSEDPAF-SIRIPADIFTLQR-----------RQQTSTTK---------- 523
           LG        +  +P+   +R   D+F L              Q +   K          
Sbjct: 487 LGYVAATALTQPIEPSDPPVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPASGEEKI 546

Query: 524 ---IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
                N  G    +  ++ ++I   +   L + +  L IRHVG   A +LA+ + S    
Sbjct: 547 VTFFANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRI 606

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                + +A              VG  IA ++ ++Y+   +   +               
Sbjct: 607 FAAEESELAET----------EGVGPTIAASLKQWYEEDWHREILRRWKAAGVRMEAAES 656

Query: 641 KNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
           +  S    +E   +V TGTL++  R  A+E +   GA V+  +S+KT  ++VGDNPGSK 
Sbjct: 657 ETDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKY 716

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +KA  L V ++ E+ F  LLQ+    
Sbjct: 717 DKALSLKVPVLEEDGFAILLQEGPEA 742


>gi|125718295|ref|YP_001035428.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK36]
 gi|166216249|sp|A3CNX3|DNLJ_STRSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|125498212|gb|ABN44878.1| DNA ligase, putative [Streptococcus sanguinis SK36]
          Length = 652

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/702 (32%), Positives = 359/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYENGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q E
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQVGSQEE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLADLDFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +    PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEALEVPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTIENLL------ELENFKEKSANKLYTAIQASKKNSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPRLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|146321044|ref|YP_001200755.1| NAD-dependent DNA ligase LigA [Streptococcus suis 98HAH33]
 gi|253751920|ref|YP_003025061.1| DNA ligase [Streptococcus suis SC84]
 gi|253753743|ref|YP_003026884.1| DNA ligase [Streptococcus suis P1/7]
 gi|253755379|ref|YP_003028519.1| DNA ligase [Streptococcus suis BM407]
 gi|166216248|sp|A4W1W6|DNLJ_STRS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145691850|gb|ABP92355.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus suis 98HAH33]
 gi|251816209|emb|CAZ51836.1| DNA ligase [Streptococcus suis SC84]
 gi|251817843|emb|CAZ55596.1| DNA ligase [Streptococcus suis BM407]
 gi|251819989|emb|CAR46142.1| DNA ligase [Streptococcus suis P1/7]
 gi|292558495|gb|ADE31496.1| NAD-dependent DNA ligase [Streptococcus suis GZ1]
 gi|319758281|gb|ADV70223.1| NAD-dependent DNA ligase LigA [Streptococcus suis JS14]
          Length = 652

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/702 (30%), Positives = 361/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +S L   ++ +   YYQ  +P + D+EYD L R    +  A P+L     P+ P ++
Sbjct: 2   KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+M     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG 
Sbjct: 59  VGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRK-----EFPQATYICELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  +P  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAV--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N +    G   + NPRNAA+G LR+L+   +  R L  F++   + S   A  Q +
Sbjct: 172 FDRVNKQRQEAGEAEFVNPRNAAAGTLRQLDTGVVAQRGLATFLY--QEASPSEATSQSQ 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+K+  LGF  N+    A +      +  ++   R  LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 VLEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW +++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++   R         PS CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQE-IMPIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS +    +        A RC   + C +Q + +L+HF SRDA NI GLG   ++  F 
Sbjct: 398 CQSDLQHYEDE------VALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L      +        GF + S   LY +I   ++ S E  +F 
Sbjct: 450 ---GAGLVHDVADIYKLTVDDLLTLE------GFKEKSANKLYQAIQTSKSNSAECLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ ++ L + +   +  A      IA           +  +G +IA+++  F+
Sbjct: 501 LGIRHVGSKASKILVEKFGDLETLAFADQEAIA----------SLEGLGQVIAKSLTTFF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            +      +      +V+ +      + ++ +    +V TG L++++R++A+  +  LGA
Sbjct: 551 ASEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KT++++ G + GSKL KAQ+LG++I +E     L
Sbjct: 611 NVAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL 652


>gi|288904984|ref|YP_003430206.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34]
 gi|288731710|emb|CBI13271.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34]
          Length = 652

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/702 (31%), Positives = 355/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVKA-----EFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L+   P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLA--QPLNITVRGEAYLPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E    G+  +ANPRNAA+G LR+LN   +  R L  F++   + +      Q +
Sbjct: 172 FDKINKERRDSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLY--QEVASTSMTTQND 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++LG
Sbjct: 230 VLEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G +++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTMVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRDKQV-PMPIPESCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   FK
Sbjct: 398 CGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFK 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     +   ADI+ L      S        GF + S   LY++I   +  S ++ +F 
Sbjct: 451 VE----LVHDVADIYQLTVEDLLSLD------GFKEKSAEKLYNAIQVSKENSADKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ +R L + + +                 D  S+  +  +G +IA ++  ++
Sbjct: 501 LGIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIANSLRSYF 550

Query: 617 QNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   +  L            + +  +++    +V TG L+++ R++A+E +  LGA
Sbjct: 551 AKKEATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTDI++ G + GSKL KAQ LG+ + +E     L
Sbjct: 611 KVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652


>gi|25010923|ref|NP_735318.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae NEM316]
 gi|81457056|sp|Q8E5W1|DNLJ_STRA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23095302|emb|CAD46512.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 652

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/700 (31%), Positives = 365/700 (52%), Gaps = 53/700 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L   ++ +   YY    P + DS+YD L R    +    P+      PN P +++G
Sbjct: 4   RMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHRVG 60

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG  +
Sbjct: 61  GLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVKA-----EFPTASYMAELKIDGLSV 115

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  F 
Sbjct: 116 SLTYVNGILQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFE 173

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
           A+N E  A G + +ANPRNAA+G LR+LN   +  R L  F++   + S    + Q ++L
Sbjct: 174 AINIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLY--QEASPTQKETQDDVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG  
Sbjct: 232 KELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C 
Sbjct: 352 I-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPSCG 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S +V   +        A RC   L C  Q  ERL HF SRDA NI G G   ++  F   
Sbjct: 400 SELVHFEDE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD-- 450

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  I   ADI+ L      S   +  + G  + S T +Y +I   +  S E+ +F LG
Sbjct: 451 --AHLIADVADIYRL------SIEDLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ +R L + + + +  +Q     IA           +  +G +IA+++  F++ 
Sbjct: 503 IRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIAKSLHTFFEK 552

Query: 619 PRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                 +E      V+ +      +  +++    +V TG L+K+ R++A+E +  LGA V
Sbjct: 553 EEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 613 TGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652


>gi|325694926|gb|EGD36831.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK150]
          Length = 652

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/702 (32%), Positives = 361/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVCK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q  
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQVGSQEA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  LGF VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLAALGFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEREAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +P   PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEPLEIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFKDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYTAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQNLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|260889570|ref|ZP_05900833.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254]
 gi|260860981|gb|EEX75481.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254]
          Length = 702

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/715 (32%), Positives = 379/715 (53%), Gaps = 50/715 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-- 70
           S    +++ + L  EI YH++ YY   KP+I D EYDAL R    +   +P+L ++E+  
Sbjct: 22  SFSDVQEKYAKLRNEIEYHNNLYYNEDKPLISDMEYDALMRELKQLEQKYPELLKNEENG 81

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSI 126
            + P  KIGG  +    KV H +P LSL   +NI ++  F  RI +       K+    +
Sbjct: 82  ESSPTEKIGGTASEKFSKVRHRVPMLSLSNTYNISEIEDFDKRIKKIILSENVKEHSKEL 141

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            + LE K+DG  I++ YE G  V A  RGDG  GEDV+  I  I TIP+ L  NI   +E
Sbjct: 142 EYILELKLDGLSISLIYENGVLVQAVTRGDGQVGEDVTENIMEITTIPKKLKENI--SLE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGE+ +  + F  +N E    G   +ANPRNAASG +R+L+ T +  R L+ +++ L  
Sbjct: 200 VRGEIILPISSFNRINQEREDDGEDVFANPRNAASGTIRQLDKTIVAERGLDCYLYYLVN 259

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                     E ++ +  LGF       +   F  +    ++  + R  L Y+ DGLV K
Sbjct: 260 AENYGINTHLESIEYIEKLGFKTTKIFEKYTDFKELEKSIDKWHNYRKKLDYETDGLVIK 319

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+ F+L + LG   +SPRW I++KF  +Q  T+L+D+  Q+GRTG++TPVA LE VN+ G
Sbjct: 320 VNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLMDVTFQVGRTGVITPVAELEAVNLSG 379

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           +++  A+LHN D I+            +DI++GD V+V++A E+IP+VV+++ ++R    
Sbjct: 380 SVVKRASLHNFDEIRR-----------KDIKIGDNVIVEKAAEIIPQVVNVVFDDRTGQE 428

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P+ CP+C S +  +      + + A +C   L C  +   ++ +FVSRDA NI G
Sbjct: 429 IEIQEPANCPVCNSELAHE------EGLVALKCHNPL-CPEKVKRQIAYFVSRDAMNISG 481

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++ F +       I+   DI++L++ +     ++EN+   G  SV NL +SI   
Sbjct: 482 LGDKIVEKFIELGK----IKTIVDIYSLEKYR----EELENLEKMGQKSVDNLINSIESS 533

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-QEINNIIAHNNDDWLSLIRVPLV 604
           +N    + +++LGI  VG   A  L K + + +N   Q I N++A           V  +
Sbjct: 534 KNRDFSKVLYALGIPFVGKFNANLLTKTFKNIENLKNQSIENLLA-----------VKGI 582

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKI 661
           GD +A A+  F  +  N   +  L              E+   + I++K  + TG LQK 
Sbjct: 583 GDKVAVAVNTFLNDEDNWKIITDLKNIGLQFAVDENNSEEIADNPIKDKNFLATGKLQKY 642

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +R+  ++ +   G    + +S+  D +I G+  GSKLEKA++LGV+I+ E++F  
Sbjct: 643 KRNDIKDIILSKGGNYLSAVSKNLDFLIAGEKAGSKLEKAEKLGVRILTEDEFEK 697


>gi|19552465|ref|NP_600467.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC
           13032]
 gi|62390131|ref|YP_225533.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC
           13032]
 gi|81760918|sp|Q8NR20|DNLJ_CORGL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21324011|dbj|BAB98637.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325467|emb|CAF19947.1| DNA LIGASE [Corynebacterium glutamicum ATCC 13032]
          Length = 680

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/721 (29%), Positives = 355/721 (49%), Gaps = 52/721 (7%)

Query: 12  LSIEQARKE--LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++ + A+     + L +++ YH D YY   +P I D+++DAL ++   +    P+LA   
Sbjct: 1   MTEDNAQLRRTWNDLAEKVRYHRDRYYNE-QPEIPDADFDALFKQLQQLEEDHPELAV-- 57

Query: 70  DPNGPLNKIGGEMNL--SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            P+ P   +G  +    S   V H    LSL+ +++ ++LR ++ R           +  
Sbjct: 58  -PDSPTMVVGAPVAEQSSFDNVEHLERMLSLDNVFDEQELRDWLGRT---------PAKQ 107

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPE 183
           +  E KIDG  I + Y  G+   AA RGDG  GED++A  R I  IP  L       +P 
Sbjct: 108 YLTELKIDGLSIDLVYRNGQLERAATRGDGRVGEDITANARVIEDIPHQLQGTDEYPVPA 167

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
           ++E+RGEV+I+  DF  +N + IA G KP+ANPRNAA+G LR+ N  D+  R L    HG
Sbjct: 168 VLEIRGEVFITVEDFPEVNAQRIADGGKPFANPRNAAAGSLRQKNIEDVKKRRLRMISHG 227

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +G T       Q++    +   G P +           +V   +     R    +++DGL
Sbjct: 228 IGFTEGFSPASQHDAYLALAAWGLPTSPYTEAVTDPEDVVKKVSYWADHRHDALHEMDGL 287

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD+ + Q+ LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV 
Sbjct: 288 VIKVDDIASQRALGSTSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVL 347

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ ++ ATLHN+  +K            + + +GD V++++AGEVIP+V+  +V  R 
Sbjct: 348 VAGSTVSMATLHNQSEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVELRD 396

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + + FP+ CP C +R+               RC    +C  Q   RL +   R AF+
Sbjct: 397 GTEREYIFPTLCPECGTRL-----APAKADDVDWRCPNMQSCPGQLSTRLTYLAGRGAFD 451

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IE LG++  +   ++      +   + +F L      S+       G  + S   L D++
Sbjct: 452 IEALGEKGAEDLIRT----GILLDESGLFDLTEDDLLSSNVYTTNAGKVNASGKKLLDNL 507

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +   L R + +L IRHVG   AR+LA  Y S Q         ++             
Sbjct: 508 QKSKQTDLWRVLVALSIRHVGPTAARALAGRYHSIQALIDAPLEELSET----------D 557

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG IIAQ+  ++++   +   V+              +     +E   +V TG L+   
Sbjct: 558 GVGTIIAQSFKDWFEVDWHKAIVDKWAAAGVTMEEEVGEVAEQTLEGLTIVVTGGLEGFT 617

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R   +E +   G   S  +S+KTD +++G+N GSK  KA++LG++I++E  F+ LL   +
Sbjct: 618 RDSVKEAIISRGGKASGSVSKKTDYVVIGENAGSKATKAEELGLRILDEAGFVRLLNTGS 677

Query: 723 T 723
            
Sbjct: 678 A 678


>gi|255658313|ref|ZP_05403722.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
 gi|260849632|gb|EEX69639.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
          Length = 675

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/711 (30%), Positives = 355/711 (49%), Gaps = 47/711 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SI+Q +KEL+ L + I YH++ YY    P I D EYD L  R  AI   +P+L      N
Sbjct: 9   SIQQVKKELTELRKTIRYHNNRYYNEDNPEISDYEYDQLMLRLKAIEAKYPELITK---N 65

Query: 73  GPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P   +GG+    +   V H +P LSL+ +++ E++  F+  + +  +  +     F +E
Sbjct: 66  SPTQVVGGQARRTAGVLVKHDVPMLSLQDVFSKEEIFAFVEELQQELEAPE-----FVVE 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
            KIDG  + +RYE G+ V A  RGDG   GEDV+   + I  + + L   +P   E+RGE
Sbjct: 121 EKIDGLSMALRYEDGELVRAITRGDGIVQGEDVTENAKVIHDVKKKLKDKLP-YFEIRGE 179

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           VY+ K  F A+N     +G KP+ANPRN A+G LR+L+      R+L+ F+  L      
Sbjct: 180 VYMEKKAFDAVNARQELLGLKPFANPRNCAAGTLRQLDSRITKERHLSLFIFNLQTARGR 239

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E    M+  G  V +G +  +T   +      +   R  LPYDIDG V K++  
Sbjct: 240 TFTTHTEAYDFMKKQGIKVIHGYKVCHTADEVWQAITAIGENRGNLPYDIDGAVVKLNNL 299

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + +++LG  A+ PRW I++K+  ++  T +  I++ +GRTG +TP A  +P+ + G  + 
Sbjct: 300 ADREKLGATAKVPRWAIAYKYPPEEKETVIRKIELSVGRTGRITPTAVFDPIRLCGTTVE 359

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D+I  L           D+R+GD V V ++GE+IPKV +++  +R    +PF 
Sbjct: 360 RATLHNQDFIDNL-----------DVRIGDTVRVYKSGEIIPKVKEVVKEKRPAGTEPFV 408

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
             + CP+C +  VR+ +       +  +C    +C AQ    + +FV R A +I+GLG+ 
Sbjct: 409 IGTTCPVCGAPAVREPD------TSDIKCKNP-SCPAQLESHILNFVGRSAMDIKGLGEA 461

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    +       I   AD++ L  +++    K   I+G  + +   +  +I   +   
Sbjct: 462 AIHRLIED----GFIATIADLYRLGGKREELIEK--GIIG-KEKNTDKVLAAIEASKENE 514

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +  LGI  +G   AR L  ++ S    A+     I          + V  +G+I A
Sbjct: 515 PQRLLTGLGIPGIGRTAARELMLHFGSIDALAKASEEEI----------LEVRDMGEISA 564

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +AIV+++ +P +   + A               V  +   K  V TGTL  + R  A   
Sbjct: 565 KAIVQYFNDPASQKILAAFRAAGVNFTLEDTGLVDEKFAGKTFVITGTLPSLSRKDAAAL 624

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G  V+  +S+KTD ++ G+  GSKL+KA  LG+ I++E     LL+ 
Sbjct: 625 IESHGGRVAGSVSKKTDYLVAGEAAGSKLQKATDLGITILDEAGLQALLED 675


>gi|300743918|ref|ZP_07072938.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567]
 gi|300380279|gb|EFJ76842.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567]
          Length = 740

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/741 (30%), Positives = 370/741 (49%), Gaps = 57/741 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  R E + L   I      YYQ   P + D+EYD L RR + I   +P L  +   + P
Sbjct: 27  DTIRAEYAELTDTIRAARHDYYQADAPTLSDAEYDRLYRRLEQIEAQYPALIAN---DSP 83

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE++ +   VTH +   SLE ++++E+LR ++T+     +     +  +  E KI
Sbjct: 84  TQEVGGEVSEAFSPVTHLVRMYSLEDVFSLEELRAWLTKAEENTRLLTGTAPQWLTELKI 143

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193
           DG  + + Y  G  V AA RGDG +GEDV+  +R I +IP+ L   N P  +EVRGEV+I
Sbjct: 144 DGLAVNLLYRNGVLVRAATRGDGTTGEDVTHNVRTIASIPQKLAGENHPAELEVRGEVFI 203

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           S  DF  LN++M++ G+ P+ANPRNAA+G LR+ +      R L+ +VHG+G  + +   
Sbjct: 204 SSADFKKLNEKMVSEGKNPFANPRNAAAGSLRQKDSAVTAERPLSMYVHGVGSRTGLDVN 263

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            QY+  +++   G P +   +   +   I+ Y  E    R +L ++IDG+V KV++F  Q
Sbjct: 264 SQYQTYEQLAAWGLPTSPYSKLFTSVDDILRYIAEYGEKRHSLVHEIDGIVIKVNDFVAQ 323

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            QLG  +R PRW +++K+  ++ +T+LLDI + +GRTG +TP   +EPV + G+ +  AT
Sbjct: 324 TQLGYTSRVPRWAVAYKYPPEEVNTKLLDIRVDVGRTGRVTPYGVMEPVLVSGSTVERAT 383

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D +K            + + +GD V++++AG+VIP++V  +V  R+   + F  P+
Sbjct: 384 LHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEIVGPVVALRNGHEREFVMPT 432

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +         +     RC    +C AQ  ER+ +  SR AF+IE LG +   
Sbjct: 433 ECPSCGTTL-----APGKEGDVDMRCPNYRSCPAQLTERIYYAASRGAFDIEALGFEAAK 487

Query: 493 FFFKS-EDPAFSIRIPADIFTLQRRQQ-------------TSTTKIENILGFG------- 531
                 E     +   A +F L                    T K E +  F        
Sbjct: 488 ALTAPAEPEQPPLTSEAFLFDLTAEDLRDVKIRREKKVKGVGTGKFELVPYFYTKPTKAK 547

Query: 532 -----DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                  +  NL+  + K ++  L R + +L +RHVG   AR+LA  + S    AQ   +
Sbjct: 548 PEPVPTKNTQNLFVELEKAKSQPLWRVLVALSLRHVGPTAARALATEFGSMDAIAQADRD 607

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
            +A           V  VG +IA +I+E++    +   +              + ++   
Sbjct: 608 RLAA----------VDGVGGVIADSIIEWFATDWHREVLARWADAGVRMEDERDASIERT 657

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E   +V TGTL    R  A+E +   G   S  +S+KT  ++ G + GSKL+KA+ LG+
Sbjct: 658 LEGVTVVVTGTLVNYSRDSAKEAIIVRGGRASGSVSKKTHFVVAGASAGSKLDKAEALGI 717

Query: 707 KIMNEEQFLFLLQQYNTTLRI 727
            +++E+ F  LL      L  
Sbjct: 718 PVLDEDGFTKLLAHGPDALTP 738


>gi|327474802|gb|EGF20207.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK408]
          Length = 652

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/702 (32%), Positives = 360/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEKKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q  
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQVGSQEA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +P   PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEPLEIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYTAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|189499438|ref|YP_001958908.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1]
 gi|254781285|sp|B3EM49|DNLJ_CHLPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189494879|gb|ACE03427.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1]
          Length = 684

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/725 (31%), Positives = 367/725 (50%), Gaps = 54/725 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA  E+  L +EI  H+  YY  ++P I D +YDA+  +  A+   FP+L  S   
Sbjct: 1   MDKKQAVAEIIRLREEIDRHNYRYYVLARPEISDFQYDAMLEKLVALEGEFPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      V H  P LSL   ++IE++ +F  R+ +   ++  +S  F  E
Sbjct: 58  DSPSQRVGGGITKEFPTVEHREPMLSLSNTYSIEEVGEFYHRVVKLLPEEHRDSPEFVAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----------I 181
            K DG  +++ Y  G  V  A RGDG  G+D++  IR I ++P  L              
Sbjct: 118 LKFDGVAVSLLYRDGLLVRGATRGDGSQGDDITGNIRTIRSVPLRLGNPSGSGEGVERYE 177

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241
              IEVRGEV+++K DF  LN+       + +ANPRNA +G L+  +  +++R    FV 
Sbjct: 178 GREIEVRGEVFMTKTDFAVLNEGRPE--EERFANPRNATAGTLKLQDSGEVSRRKMVFVA 235

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST-LPYDID 300
              K S        E L+ +  LGF      R   T   I  Y +  +  R T LPY+ID
Sbjct: 236 YYLKESSAEIISHAERLELLERLGFYTGGEHRVCRTLKDIREYIDGWQKKRLTGLPYEID 295

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K++  +L+ +LG  ++SPRW I++KF  ++A T +  I  Q+GR G +TPVA LEP
Sbjct: 296 GIVLKLNNTALRDELGATSKSPRWAIAYKFPAERARTVIRSIVFQVGRLGTITPVAELEP 355

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G  ++ +TLHN + ++ L           D+R+ D V+++++GE+IPKV+ ++  +
Sbjct: 356 VRLAGTTVSRSTLHNLEEVERL-----------DVRLHDTVVIEKSGEIIPKVISVVEEK 404

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R P   P   P  CP C + +V+  N         + C     C AQ   R++HF SR+A
Sbjct: 405 RRPGTLPVVVPESCPSCGTPLVKPPNE------VHYYCPNSEGCPAQTKARIEHFASRNA 458

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I GLGK  ++    S      +    D++ L         +        + S  NL +
Sbjct: 459 MDINGLGKAIVEQLVSSGM----VVDAGDLYRLTPDLIMRLDRQA------EKSAGNLVN 508

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I K RN    R +F+LGIRHVG   AR LA  Y +     +     ++           
Sbjct: 509 AIAKSRNREYFRVLFALGIRHVGIATARELAGAYPTLDMLCKASVEALS----------D 558

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           V  VG +IA+++  F++ P     +E L +  V     + +K V+   +  K++FTG L+
Sbjct: 559 VTDVGPVIAESVHAFFRKPSATAMIEKLREAGVRLEAEKTKKPVNLNFDGMKVIFTGALE 618

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  R +A   V + G    A +S+ T++++ G  PGSKLEKA++LGV+++ E +F  +L 
Sbjct: 619 RYTRDEAAGLVRERGGKTVASVSKNTNLVVYGKEPGSKLEKARKLGVRVITESEFEEMLG 678

Query: 720 QYNTT 724
           +  + 
Sbjct: 679 EVGSN 683


>gi|221195651|ref|ZP_03568705.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626]
 gi|221184417|gb|EEE16810.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626]
          Length = 706

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/730 (31%), Positives = 363/730 (49%), Gaps = 53/730 (7%)

Query: 12  LSIEQA--RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +S  +   R   + L + +++    YY    P + D+E+D L      I  A P+L    
Sbjct: 1   MSEAEKSFRSRAAELNRILNHAAYAYYALDAPELTDAEFDRLLVELQGIEAAHPELIV-- 58

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P     ++GG ++     VTH+    S++   N+E+L  ++ R          + + +T
Sbjct: 59  -PESYTQRVGGYVSEQFEPVTHAARMYSIDDAMNLEELDAWLARTDEALGASKTHPVAYT 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---------SLN 180
            E KIDG  I + Y +G+ V  A RGDG +GE+V+A    I  IPR L            
Sbjct: 118 CELKIDGLGIALTYTEGQLVRGATRGDGATGENVTANALTIKDIPRALAPAGLARLRDEG 177

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
               +EVRGEVY+ K+ F+ LN++  A G++P+ANPRNAA+G LR+ +P     R L  F
Sbjct: 178 AHLSLEVRGEVYMPKHSFVRLNEDADAAGKQPFANPRNAAAGSLRQKDPKVTAHRDLETF 237

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +   + +    Q++ L  +R  GF VN    +  +   +  +       RS L YDI
Sbjct: 238 MYAIADEAPLQVDSQWKFLSWLRDCGFSVNTHAARCVSAQEVHDFCKRALEERSELDYDI 297

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KVD F+ Q++LG  +R+PRW I+ KF  ++  T L +I IQ+GRTG+LTPVA  +
Sbjct: 298 DGVVVKVDSFAYQEELGFTSRAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEFD 357

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+ I  ATLHN D +             +++R GD ++V +AG+VIP+VV  ++ 
Sbjct: 358 PVVVAGSTIARATLHNIDEVHR-----------KNVREGDTIIVHKAGDVIPEVVRPVLE 406

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  +++PF  P+ CP C S VV++          A+RC   + C AQ  ERL H+ SR 
Sbjct: 407 KRPLNSKPFMMPTVCPSCGSPVVKEEGE------VAYRCV-SIDCPAQATERLIHWGSRK 459

Query: 480 AFNIEGLGKQQLDFFFKSED-----PAFSIRIPADIFTLQRRQQTSTTKIENILGFG--- 531
           A +I+GLG++ ++    +         +     +DI  L   +   T    ++ G     
Sbjct: 460 AMDIDGLGEELVNKLVANGILSDVADFYDKLTVSDIAELPTGRFYETDTDGHLSGDPIPT 519

Query: 532 -DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
                  +   I + +   L R +F +GIRHVGA +A  LA+Y+ S Q         +A 
Sbjct: 520 GLTIAEKIMTQIQESKTRGLARVLFGIGIRHVGANMAALLAQYFHSIQELQLATEEQMAA 579

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIEN 649
                     +  VG  +A++I EF+  P NI  +E L              +    +  
Sbjct: 580 ----------ISGVGPKMAKSIKEFFLIPENIAVLERLRVAGVVMEEADATSDKPQTLSG 629

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
              V TGTL+   R +A   + + GA VS  +S+KT  ++ G+  GSKL KA  LGV ++
Sbjct: 630 LTFVLTGTLEHYTRDEAGALLKERGAKVSGSVSKKTSFVVAGEAAGSKLTKAVSLGVPVL 689

Query: 710 NEEQFLFLLQ 719
           +E     +L+
Sbjct: 690 SEADLERILE 699


>gi|323351288|ref|ZP_08086944.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66]
 gi|322122512|gb|EFX94223.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66]
          Length = 652

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/702 (31%), Positives = 359/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYENGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q  
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQADSQEA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  L F VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLADLDFSVNPTHILADSIDSVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +P   PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEPLEIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNINGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYTAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KT++++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTNLVVAGADAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|76798177|ref|ZP_00780429.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21]
 gi|77405561|ref|ZP_00782652.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
 gi|77410701|ref|ZP_00787060.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111]
 gi|76586485|gb|EAO62991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21]
 gi|77163237|gb|EAO74189.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111]
 gi|77175868|gb|EAO78646.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
          Length = 648

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/699 (31%), Positives = 362/699 (51%), Gaps = 53/699 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DS+YD L R    +    P+      PN P +++GG
Sbjct: 1   MNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG  ++
Sbjct: 58  LVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVKA-----EFPTAAYMAELKIDGLSVS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  F A
Sbjct: 113 LTYVNGVLQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEA 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N E  A G + +ANPRNAA+G LR+LN   +  R L  F++   + S    + Q ++L+
Sbjct: 171 INIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLY--QEASPTQKETQDDVLK 228

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           ++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG   
Sbjct: 229 ELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGFTV 288

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DYI
Sbjct: 289 KAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI 348

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
                        +DIR+GD V+V +AG++IP V+++++++R+        P  CP C S
Sbjct: 349 -----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPSCGS 396

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +V            A RC   L C  Q  ERL HF SRDA NI G G   ++  F    
Sbjct: 397 ELVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD--- 446

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
            A  I   ADI+ L      +        G  + S T +Y +I   +  S E+ +F LGI
Sbjct: 447 -AHLIADVADIYRLSIENLLTLD------GIKEKSATKIYHAIQSSKENSAEKLLFGLGI 499

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVG++ +R L + + + +  +Q     IA           +  +G +IA+++  F++  
Sbjct: 500 RHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIAKSLHTFFEKE 549

Query: 620 RNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                +E      V+ +      +  +++    +V TG L+K+ R++A+E +  LGA V+
Sbjct: 550 EVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVT 609

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 610 GSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 648


>gi|260904918|ref|ZP_05913240.1| DNA ligase, NAD-dependent [Brevibacterium linens BL2]
          Length = 729

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/747 (28%), Positives = 355/747 (47%), Gaps = 67/747 (8%)

Query: 11  ALSIEQARKE-LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
            LS   AR +  + L ++I      YY+   P++ D+EYD L  R + +   FP+L    
Sbjct: 15  DLSDATARAQAHADLVEKIEEQRAAYYKDDSPLVADAEYDDLVHRLEDLEEKFPELVTD- 73

Query: 70  DPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             + P   +GG +   +   V H     SL+ +++ E+LR +  R+             F
Sbjct: 74  --SSPTQTVGGNVDTSTFDPVEHIGRMYSLDNVFDFEELRGWYDRVRAATSATS----KF 127

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEV 187
             E KIDG  + + Y  G+ V AA RGDG  GED++A +R I  IP  L  + P   +E+
Sbjct: 128 LCELKIDGLAVNLLYRNGELVRAATRGDGRIGEDITANVRTISDIPDHLDTDYPPAEVEI 187

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-- 244
           RGEV+     F  LN  ++  G+ P+ANPRN+A+G LR+ +P     R L+  VHG+   
Sbjct: 188 RGEVFFPLEKFTELNAALVEEGKAPFANPRNSAAGSLRQKDPAVTAVRPLHMLVHGIAVW 247

Query: 245 ---KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                S      Q E+ ++ R  G P++   +   T   I  +       R  + +++DG
Sbjct: 248 TPADDSHPEPAHQSEVYEQFRSWGLPISEYFKVLETVDEIEEFITYYGEHRHDVTHELDG 307

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K+D+ ++Q+ LG  +R+PRW  + K+  ++ +T+LLDI +Q+GRTG +TP A +EPV
Sbjct: 308 IVIKIDDIAVQETLGYTSRAPRWATAFKYPPEEVTTKLLDIQVQVGRTGRVTPFAVMEPV 367

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN   +K            + + +GD V +++AG+VIP+V+  +V +R
Sbjct: 368 TVAGSTVERATLHNGYEVKR-----------KGVLIGDTVTLRKAGDVIPEVLGPVVAQR 416

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                 F  P+ CP C + +      +        RC    +C AQ   R+ +  SR AF
Sbjct: 417 DGSEYEFVMPTHCPSCGTEL-----GEQKAGDKDKRCPNARSCPAQLANRIFYLASRAAF 471

Query: 482 NIEGLGKQQLDFFFKS-EDPAFSIRIPADIFTLQRRQQTSTTKIEN-------------- 526
           +IE LG++         E  +  +   A +F L            N              
Sbjct: 472 DIEALGEEAALALTAPAEPESPPLTSEAFLFDLTAEDLAEVKIWRNKKVKGVETGERELV 531

Query: 527 ----------ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                            +   L+D ++K ++  L R + +L IRHVG   AR+LA ++ +
Sbjct: 532 PYFYTRPTAKKPSAPSANTKKLFDELDKAKDQDLWRVLVALSIRHVGPTAARTLAAHFRT 591

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +          A    +   L  V  +G  IA +I +++    ++  VEA  +      
Sbjct: 592 LE----------AIRAAELEELSAVDGIGSTIAASIRDWFAVDWHVEIVEAWAEAGVRME 641

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++     +E   +V TG+L    R   +E +   G   ++ +S+KTD ++ G+N GS
Sbjct: 642 DEEQETGEQTLEGLTIVATGSLSTFTRDGIKEAILGAGGKAASSVSKKTDYVVAGENAGS 701

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           KLEKA+ LGV++++E+ F  LL+  + 
Sbjct: 702 KLEKAESLGVRVLDEDTFRILLETGSI 728


>gi|194335632|ref|YP_002017426.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1]
 gi|254781384|sp|B4SCX5|DNLJ_PELPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194308109|gb|ACF42809.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1]
          Length = 674

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/711 (31%), Positives = 364/711 (51%), Gaps = 50/711 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A + ++ L +EI  H   YY  +KP + D E+D L  +   +   FP L     P+ P 
Sbjct: 6   RAAEAIAQLRREIERHTHLYYVEAKPELSDFEFDQLLDQLITLERQFPQLL---TPDSPS 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +      V H  P LSL   ++I ++ +F  R+ +    +         E K D
Sbjct: 63  QRVGGAITREFPAVQHREPMLSLSNSYSITEVEEFYNRVRKLLALEGVVEQEMVAELKFD 122

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-------NIPEIIEVR 188
           G  I++ Y+ G  V  A RGDG  G+D++A ++ + TIP  L              IEVR
Sbjct: 123 GVAISLIYQDGILVRGATRGDGRQGDDITANLKTVATIPLRLEETLVAALQGEERAIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GEV++ K DF  LN+      R  +ANPRNA +G L+  +  ++ R    FV    K  +
Sbjct: 183 GEVFMRKEDFERLNESRPDEDR--FANPRNATAGSLKLQDSGEVARRSMSFVAYYLKGLK 240

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +      L+ +  LGF   +  R  NT   I +Y  E    R  LPY+ DG+V K+++
Sbjct: 241 DESTPHIHRLELLARLGFFTGDHYRLCNTLEEINTYIAEWAEKRWQLPYETDGVVLKLND 300

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +++LG  A+SPRW I++K+  +QA + L ++  Q+GR G +TPVA LEPV + G+ +
Sbjct: 301 VPFREKLGATAKSPRWAIAYKYPAQQARSVLQNVLFQVGRLGTITPVAELEPVLLAGSTV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + +TLHN D I+ L            + + DRV+++++GEVIPKVV  +  ER  DA P 
Sbjct: 361 SRSTLHNFDEIERL-----------GLMLRDRVIIEKSGEVIPKVVRTLFEERPADAMPI 409

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C + +VR  N        ++ C     C AQ   RL HF SR+A +I+ LG 
Sbjct: 410 LPPTHCPSCGAPLVRPENE------VSYSCPNEEECPAQIKGRLLHFASRNAMDIQTLGD 463

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++           ++ P D++ LQ  Q       E +   G  S  N+  ++ K R  
Sbjct: 464 ALVEQLVAK----GLVKDPGDLYFLQEPQL------EKLERMGPKSAQNILRALEKSREK 513

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S ER +++LGIRHVG   AR L++   S     +     +A           +P +G ++
Sbjct: 514 SYERLLYALGIRHVGRATARELSQACPSIDLLREASEEQLA----------TIPDIGPVV 563

Query: 609 AQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A++I++++  P     +E L    +  S    ++ V+   E   ++FTG+L++  R KA 
Sbjct: 564 ARSIIDYFAKPSWPHLLEKLRTAALQLSASEPKEQVNRNFEGVTVLFTGSLERYDRQKAS 623

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E V + G  V   +S+KT +++ G +PGSKL+KA +LGV++++E++F  +L
Sbjct: 624 ELVLERGGRVVGSVSKKTGMVVAGQDPGSKLQKANKLGVRVVSEDEFEAML 674


>gi|168705071|ref|ZP_02737348.1| NAD-dependent DNA ligase [Gemmata obscuriglobus UQM 2246]
          Length = 678

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/709 (30%), Positives = 358/709 (50%), Gaps = 45/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +  + L +++ +H+  YY  + P+I D E+D L +    I  A P L     P+ P  +
Sbjct: 10  AERAAELRKQLDHHNYLYYVEAAPVISDREFDTLLKELADIERANPGLV---TPDSPTQR 66

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+      +VTH  P LS++  ++  DLRKF   + +        ++ +  E KIDG 
Sbjct: 67  VGGQPIPGFKQVTHKTPMLSIDNSYDEGDLRKFDADVRKAVG--PGAAVDYVTELKIDGV 124

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            +++ YE G   +AA RG G  G+DV+  I+ I  IP  L   N P I EVRGEVY+++ 
Sbjct: 125 SMSLTYENGVLAFAATRGSGTVGDDVTHNIKTIAAIPLKLKTSNPPAIFEVRGEVYMTRG 184

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQY 255
           +   +N E     ++PY N RN  +G L+  +P +  TR L FF +G G    +    Q 
Sbjct: 185 ELARINAEQAKGNQEPYKNARNLTAGTLKLKDPRECATRKLAFFAYGSGDIGGLAITTQA 244

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            ML K++  GFPVN   R   +   +++Y  E +  R  L YD DG+V KV++++ ++++
Sbjct: 245 AMLAKLKEFGFPVNPHERVCGSIDEVIAYCQEWEPKRKELAYDTDGIVVKVNDWAQRERI 304

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE-PVNIGGALITNATLH 374
           G  A+ P+W  ++KF  +QA+T+L  +   +G+ G LTPVA  + PV + G  +T+A++H
Sbjct: 305 GYTAKVPKWAKAYKFEAEQATTKLGKVVFYLGKFGELTPVATFDPPVQLAGTTVTHASMH 364

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N  ++             RD+R+GD V+V++ GE+IP+VVD+I  +R    Q  ++P  C
Sbjct: 365 NASWV-----------AERDVRIGDTVVVEKKGEIIPQVVDVIKADRTGAEQVITWPDKC 413

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C   V ++ +  +   +    C     C AQ  +RL+ F  +    I+GLG++     
Sbjct: 414 PKCGGPVEKEESATSYNFI----CANTGVCPAQLAKRLEGFAKKTRMEIDGLGREVAVQL 469

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             +E     ++  AD++ L + Q  +        GF D    NL D I   +   L R +
Sbjct: 470 VDTE----LVKSVADLYRLTKAQLLALE------GFKDKKAQNLLDGIAASKGRGLARLL 519

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             L I  VG  ++  L + +        +I+ IIA   +D     RV   G   AQ +  
Sbjct: 520 PGLTIYMVGEAMSDLLVEEFP-------DIDLIIAAAPEDLA---RVKGFGPKRAQFVRA 569

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F+ +      +  L +         +   +    +  K +V TGTL    R   ++ +  
Sbjct: 570 FFDSESGRQLIADLKQFGIKMTHDKKAAPTGGLPLAGKTVVVTGTLVNYDRIGIEQAIKD 629

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            GA  S  +S+KTD ++VGD PGSK +KA++LGVKI+NE +F  ++ + 
Sbjct: 630 AGAKASGSVSKKTDFVLVGDKPGSKADKAKELGVKIINEAEFRQMIGEG 678


>gi|293365500|ref|ZP_06612209.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037]
 gi|307703456|ref|ZP_07640398.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037]
 gi|291315868|gb|EFE56312.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037]
 gi|307622863|gb|EFO01858.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037]
          Length = 652

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/701 (30%), Positives = 359/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   ERMNELVALLNRYATEYYTSDNPSVSDSEYDCLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKFSHQYPLYSLQDAFSREELEAFDARVRKEIPHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYENGILVAGATRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A +   +  +  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LEHLEQLGFVVNPKRILAQSIDEVWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S+++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 DSQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L+              G  + S + LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLKENDFLLLE------GVKEKSASKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IAQ++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   ++      V+           + +    +V TG L+++ R +A+  +  LGA 
Sbjct: 552 TEGSKILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKNKLEILGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KT++++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|282851211|ref|ZP_06260576.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1]
 gi|282557179|gb|EFB62776.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1]
          Length = 668

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/716 (29%), Positives = 367/716 (51%), Gaps = 52/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  QA +++  L +++    + YY    P++ D+ YD   +    +   FPDL  S
Sbjct: 1   MAVLTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTS 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       + + +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +     Q++ + +M  L F  N   ++  +   +  + +E  + R+ L Y IDG+V KVD
Sbjct: 232 KN-ITSQHQAIDEMNRLDFHTNQTGQRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +
Sbjct: 291 DLSLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LHN DY++            + +R+GD V + +AG++IP++  +++N+R  D++P
Sbjct: 351 VSRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YQIPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            +   AD++ L   Q         +  F D S+TNL  SI   + 
Sbjct: 453 PRIVKQLIDKN----FVNDVADLYHLTNEQL------SQLDHFKDKSITNLLTSIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S E  +F LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ 
Sbjct: 503 NSAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGET 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRH 664
           IA+++  ++  P     ++ L              E+   +  + K +V TG L    R 
Sbjct: 553 IAESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSDFTRS 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 613 EFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|124026855|ref|YP_001015970.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL1A]
 gi|166216227|sp|A2C5E6|DNLJ_PROM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123961923|gb|ABM76706.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL1A]
          Length = 690

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/719 (30%), Positives = 356/719 (49%), Gaps = 57/719 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L   ++  +  YY    P I D+ YD L R    I +  P L      + P  ++
Sbjct: 10  ERIKELRALLNKANYSYYVLDSPEIDDAVYDQLYRELIEIENIHPSLITD---DSPSQRL 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEPK 133
           GG  +     V H+IP LSL+  +N+ +L  +  RI +    ++ N      +    E K
Sbjct: 67  GGVPSKGFKNVEHNIPLLSLDNAFNLNELESWYGRISKLISSENKNIKKVDDLELICELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           IDG  I++RYE G    AA RGDG +GED++  IR I TIP  L L N P  +E+RGE +
Sbjct: 127 IDGNAISLRYENGILTRAATRGDGKTGEDITTNIRTISTIPLRLLLENPPSWVEIRGEAF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +  N F  LN E     +  +ANPRN+ +G LR+L+P  +  R L+FF + L        
Sbjct: 187 MPNNIFNKLNIERKNTDQPLFANPRNSCAGTLRQLDPKIVASRKLDFFAYSLYFPENWEP 246

Query: 252 K--------GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     Q E L+ ++ +GF VN       T +    YY   +  +  L Y  DG+V
Sbjct: 247 TDNNFKKPISQSESLEFLKNIGFKVNTTYETTKTLNEANKYYKYWEVKKDFLAYATDGIV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+D+F +Q  LG   ++PRW I+ K+  ++ +T+L  I  Q+GR+G +TPVA  E + +
Sbjct: 307 VKIDKFDIQNLLGATNKAPRWAIAVKYPAEEKATKLRKIIFQVGRSGAVTPVAEFESIEL 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  ATLHN   +  L           D+   D ++V++AGE+IP+V+ +I   R  
Sbjct: 367 AGTSVNRATLHNAKRLASL-----------DLHYEDTIIVRKAGEIIPEVIRVIKEFRKV 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+    P  CP C S+++ + N       A  +C     C A+    L+H+VS+ + NI
Sbjct: 416 DAKLVQLPQNCPECNSKLILESNE------AITKCIN-YGCEAKLKGLLRHWVSKGSMNI 468

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG++ ++           ++  AD++ L+        +      FG+ S  NL   IN
Sbjct: 469 DGLGEKIINQLVNE----GYVKSIADLYKLEIDSLLELER------FGEKSANNLLIEIN 518

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + +N +  + ++ LGI H+G   A+SL+  + S       I  + A   +    +  +  
Sbjct: 519 ESKNKNWHKQLYGLGIPHIGEANAKSLSNNFNS-------IEELNAIAKESPEKISNIYG 571

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            G+ +  +IV+++ +  N   ++ L              +  N S+  + K  V TGTL 
Sbjct: 572 FGNEMKDSIVKWFDDSNNQTLIKELKAIGFSLKESLDSNYNSNQSNVFDGKSFVLTGTLD 631

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + R +A+E +   G  VS+ +S+KTD ++ G+  GSKL KAQ+LGVKI+NE +   LL
Sbjct: 632 SLTRDEAKELIESAGGKVSSSISKKTDFLVSGEKAGSKLNKAQELGVKIINENELKLLL 690


>gi|78357136|ref|YP_388585.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123768784|sp|Q30ZK6|DNLJ_DESDG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78219541|gb|ABB38890.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 705

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/739 (32%), Positives = 397/739 (53%), Gaps = 56/739 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R+  P++     +  + +  L   + YH   YY   +P I D+EYDAL R    +    P
Sbjct: 3   RRGAPVKQ-DSAKVEQRMEELRTLLEYHGHRYYVMDEPEISDAEYDALFRELVRLEEEHP 61

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +      P  P +K+GG++   L    HS+   SL+  + IE+ R+F+ R+ R    + D
Sbjct: 62  EHIH---PGSPTHKVGGQILDGLKPREHSLRMYSLDNAFGIEEFREFVERVVRL---EPD 115

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNI 181
             + F ++PK+DG  + + YE G F+ A  RGDG  GEDV+  +R +  +   L   +  
Sbjct: 116 APLEFWVDPKMDGLAMELVYENGVFLLAVTRGDGSMGEDVTHTMRTVRNVRMRLNPEIEA 175

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
           P  +EVRGEV I++ DF ALN      G K +ANPRNAA+G +R+L+ +    R L F  
Sbjct: 176 PVRLEVRGEVIITRADFEALNARQQQKGGKLFANPRNAAAGSVRQLDSSVAAARPLRFMA 235

Query: 241 HGLGKTSEIFAK----GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           +G+G+      +     QY++++ ++ LGF V +  R       + + + E+ + R  LP
Sbjct: 236 YGVGQVVWADGRQRWRTQYDIMRGLQELGFAVPSQGRLCAAPADVEAAFTELSAARHELP 295

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           ++IDG+V K+++  LQ+ LG  AR+PRW I+ KF   QA TRL DI IQ+GRTG++TPVA
Sbjct: 296 FEIDGVVAKLNDLDLQEALGFTARAPRWAIALKFPAHQARTRLKDIRIQVGRTGVMTPVA 355

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            LEPV +GG  +++ATLHNED I+            + + +GD V+V+RAG+VIP+VV  
Sbjct: 356 ELEPVTVGGVTVSSATLHNEDEIRA-----------KGLMLGDVVIVQRAGDVIPEVVRA 404

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +  ER    + + FP+ CP+C S  VR      G+  AA RCT  + C A + + + HFV
Sbjct: 405 VPEERTGAEREYVFPAVCPVCGSAAVR------GEGEAAWRCTN-MQCPAVRKQAIIHFV 457

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           S+   +I+G+G++ ++    S      +  PAD+F + R       ++      G+   +
Sbjct: 458 SKAGLDIDGVGRKWIEQLVDSGR----VVSPADLFRITREDLLGMERM------GEKLAS 507

Query: 537 NLYDSINKRRN-ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
           N  ++ +  R+  +L+RFI +LGIRHVG + AR+LA  + +     +           D 
Sbjct: 508 NFIEAFDSARHESTLQRFICALGIRHVGEQTARTLAARFGNMDELMRA----------DQ 557

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKL 652
            +L  +  +G  +A +I  F+ N +N   ++           +     S   + +  KK+
Sbjct: 558 ETLQSLRDIGGEVAGSIRAFFANGQNRELLQQFKNLGLWPEEQQPAGDSTPVTPLAGKKI 617

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           +FTG+L ++ R +A+    + GA V + +S + DI++ GD PGSKLEKA+ LG+ ++ E+
Sbjct: 618 LFTGSLVRMTRSEAKAMAEKAGAAVMSGVSARLDILVAGDKPGSKLEKARSLGITVLTED 677

Query: 713 QFLFLLQQYNTTLRIHDDD 731
           +F+    +         DD
Sbjct: 678 EFIRQASESEEISGQAADD 696


>gi|56708436|ref|YP_170332.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670907|ref|YP_667464.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198]
 gi|134301572|ref|YP_001121540.1| DNA ligase [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187931418|ref|YP_001891402.1| DNA ligase, NAD-dependent [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224457588|ref|ZP_03666061.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254875281|ref|ZP_05247991.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|81597232|sp|Q5NF60|DNLJ_FRATT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123063401|sp|Q14GL3|DNLJ_FRAT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215759|sp|A4IWW8|DNLJ_FRATW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781335|sp|B2SFT1|DNLJ_FRATM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56604928|emb|CAG46020.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321240|emb|CAL09403.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198]
 gi|134049349|gb|ABO46420.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|187712327|gb|ACD30624.1| DNA ligase, NAD-dependent [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254841280|gb|EET19716.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159628|gb|ADA79019.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 678

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 395/713 (55%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  + +G+G  S+ 
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 250 F--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F   + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQM 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S++    +       A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSKIENVNDQ------AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++    +      I+ PADI+ L   Q T   ++         S  N+ DSI K + 
Sbjct: 466 AKLIEQLVAAN----LIKYPADIYKLNFEQLTGLERMAA------KSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE  L       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|333024269|ref|ZP_08452333.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071]
 gi|332744121|gb|EGJ74562.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071]
          Length = 771

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/746 (28%), Positives = 355/746 (47%), Gaps = 63/746 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           EA      R+E   + +E+  H   YY   +P++ D+++D L RR  A+    P L    
Sbjct: 29  EAAVPADVREEHDRIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---R 85

Query: 70  DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            P+ P  K+ G+         V H    LSL+ +++ E L  +  R+ +       +   
Sbjct: 86  TPDSPTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAKEIGAPGYH--- 142

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           +  E K+DG  + + YE G+   AA RGDG  GED++  +R I  IP  L+ + +PE++E
Sbjct: 143 YLCELKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVE 202

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY    DF ALN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G 
Sbjct: 203 VRGEVYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGA 262

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                        + +   G P     +  ++  G+ S+       R ++ ++IDG+V K
Sbjct: 263 REGFTIDRLSHAYELLHEWGLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDGVVVK 322

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +DE  LQ +LG  +R+PRW  + KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G
Sbjct: 323 LDEIPLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAG 382

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    
Sbjct: 383 SEVEFATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSE 431

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P+ CP C + +         +     RC    +C AQ  ER+ +   R + +IE 
Sbjct: 432 RAFVMPAECPECGTPL-----RAMKEGDIDLRCPNARSCPAQLRERIFYLAGRKSLDIEH 486

Query: 486 LGKQQLDFFFKSEDPAF-SIRIPADIFTLQRRQQT-----------STTK---------- 523
           LG        +  +P+   +R   D+F L   +                K          
Sbjct: 487 LGYVAATALTQPIEPSDPPVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPASGEEKI 546

Query: 524 ---IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
                N  G    +  ++ ++I   +   L + +  L +RHVG   A +LA+ + S    
Sbjct: 547 VTFFANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSVRHVGPVAAAALAREFRSIDRI 606

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                + +A              VG  IA ++ ++Y+   +   +               
Sbjct: 607 FAAEESELAET----------EGVGPTIAASLKQWYEEDWHREILRKWKAAGVRMEAAES 656

Query: 641 KNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
           +  S    +E   +V TGTL++  R  A+E +   GA V+  +S+KT  ++VGDNPGSK 
Sbjct: 657 ETDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKY 716

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +KA  L V ++ E+ F  LL++    
Sbjct: 717 DKALSLKVPVLEEDGFAILLEEGPEA 742


>gi|283850424|ref|ZP_06367713.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B]
 gi|283574450|gb|EFC22421.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B]
          Length = 697

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/729 (33%), Positives = 371/729 (50%), Gaps = 60/729 (8%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +P+        R  L++L   I +H+  YY    P I D+ YDAL R    +  A P+LA
Sbjct: 1   MPVSDSDP---RARLAALRDLIHFHNHRYYVLDDPQIEDAAYDALYRELVTLEAAHPELA 57

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-S 125
              DPN P  ++GG +  S     H +   SL+   +  + + F+TR      ++D    
Sbjct: 58  ---DPNSPTRRVGGAVLPSFDSKAHGLRMYSLDNAMSETEWQDFLTRAANKLDREDVAFE 114

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-------S 178
             F ++PK DG  + I YEKG +  A  RGDG  GEDV+  +R +  +P  L        
Sbjct: 115 RTFWVDPKFDGLALEILYEKGVYAGALTRGDGVRGEDVTENVRTVRNVPLDLRPHARQAG 174

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
           L +PE++EVRGEV +++  F  LN+     G K +ANPRNAA+G +R+L+     +R L 
Sbjct: 175 LPVPELLEVRGEVVMTRQAFFELNERQREQGGKIFANPRNAAAGSVRQLDSRISASRPLT 234

Query: 238 FFVHGLGKTSEIFA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           FF +GLG+     A         ++  +R LG PV +  R      G+  Y+  +   R 
Sbjct: 235 FFAYGLGRQDWGEAASPWTTHSGVMAGLRSLGLPVASEGRMVE-AEGVYPYFQALGLRRQ 293

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            LP++IDG+V KVD   LQ+ LG   R+PR+ ++ KF   +A T L  ID+Q+GRTG+LT
Sbjct: 294 ELPFEIDGVVAKVDSLPLQEALGFTDRAPRFALALKFPAHEAETVLRQIDVQVGRTGVLT 353

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA LEPV++ G  +  ATLHNED IK            +D+R GD V+V+RAG+VIP+V
Sbjct: 354 PVALLEPVSLAGVTVARATLHNEDEIKA-----------KDLREGDTVVVRRAGDVIPEV 402

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           V +++ +R  DA  F FP  CP C S  VRD      +  AA RC   LAC A     + 
Sbjct: 403 VKVVLEKRPADAAAFEFPHTCPACGSPAVRD------EGAAAWRCVN-LACPAMLRRGIA 455

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
           +FVS+   +IEGLG++ ++           ++ PAD+F+L   +     ++         
Sbjct: 456 YFVSKAGLDIEGLGQKWVETLIAKGM----VKTPADLFSLTEAELLFLDRMAA------K 505

Query: 534 SVTNLYDSINKRRNI-SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
           S +N   ++   R   +L++ I +LGIR VG   AR+LA ++      A      +    
Sbjct: 506 SASNFVAAVEAARQKATLQKLIAALGIRQVGTRTARTLADHFRDLDALAAATAEELTAL- 564

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKK 651
                    P +G  +A +I EF+ N  N   V          +   +   S + +  K+
Sbjct: 565 ---------PDIGPEVAASIREFFDNEANRQLVARFKDLGLWPVSEPKPIASAAPLAGKR 615

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            +FTG L  + R  AQ  V   G  + + +S+K D ++ G +PGSKL KAQ LGV ++  
Sbjct: 616 FLFTGALPDMTREAAQALVEAAGGRIVSSVSKKLDYLVAGTDPGSKLAKAQALGVTVLTP 675

Query: 712 EQFLFLLQQ 720
           E+F  LL +
Sbjct: 676 EEFSSLLAE 684


>gi|313668860|ref|YP_004049144.1| DNA ligase [Neisseria lactamica ST-640]
 gi|313006322|emb|CBN87785.1| putative DNA ligase [Neisseria lactamica 020-06]
          Length = 827

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/853 (29%), Positives = 397/853 (46%), Gaps = 168/853 (19%)

Query: 7   IPIEALS-IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +P E LS +    + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L
Sbjct: 1   MPSENLSAMNPTAQRIHELTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPEL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYR 116
                P+ P  ++GGE      +V H +P LSL   ++ +         ++  F  R+  
Sbjct: 61  KL---PDSPTQRVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRN 117

Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
                      + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  
Sbjct: 118 GLN---GEQPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLR 174

Query: 177 L-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-R 234
           L   N PE+IEVRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R
Sbjct: 175 LHGENTPELIEVRGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQR 234

Query: 235 YLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIR 292
            L+FF + + +    F A+   + L   + LGF + +G          ++++Y +M+  R
Sbjct: 235 KLHFFPYSVARQQGGFVAEAHIQELAYFQELGFSLPDGNFGCFKNIGEVLAFYGQMQQKR 294

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
             LPY+IDG+V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +
Sbjct: 295 PELPYEIDGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAV 354

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPVARL+PV +GG  +TNATLHN+D +             +D+R+GD V+V+RAG+VIP+
Sbjct: 355 TPVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRIGDTVVVRRAGDVIPE 403

Query: 413 VVDIIVNERHPDA--------------------------------QPFSFPSFCPICQSR 440
           VV +I   R                                    +P+  P+ CPIC+S 
Sbjct: 404 VVRVIFERRPMQETAVAVSDGIGHRQDDLFAETPSAGQTRSVPLHKPYRLPTRCPICRSE 463

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + R+         A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +  
Sbjct: 464 IEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD-- 515

Query: 501 AFSIRIPADIF-----TLQRRQQTSTTKIENILGFGD----------------VSVTNLY 539
              +R  AD++     TLQ+ ++T+   +                            N+ 
Sbjct: 516 --LVRHFADLYRLDIPTLQKMKETADKTVAESDQMPSEVSSVGASGKHKKQPVKWAENIL 573

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE---------------- 583
             I   +   L RF+F+LGIRHVG   A++LA+ + + +   +                 
Sbjct: 574 GGIESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVA 633

Query: 584 ---------------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQA 611
                          I+ ++A         + +P                  + +  AQA
Sbjct: 634 HSIAHFFAQAEQQAMIDELLAAGVAPQAQAVSLPVAQYAEPQRWIARLPGFKISENKAQA 693

Query: 612 IVE---------------------FYQNPRNICAVEALLKEVSPSIGRHE-----KNVSS 645
           + E                     +    +N   +E L    +      E       ++ 
Sbjct: 694 LWELAGQSIKGLQNDKALPADWQAWRSETQNAVLLENLKTFFAQMPSEDETAQGSDGINE 753

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LG
Sbjct: 754 AVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALG 813

Query: 706 VKIMNEEQFLFLL 718
           V +++E + L LL
Sbjct: 814 VSVLSEAELLTLL 826


>gi|309378943|emb|CBX22396.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 827

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/853 (29%), Positives = 397/853 (46%), Gaps = 168/853 (19%)

Query: 7   IPIEALS-IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +P E LS +    + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L
Sbjct: 1   MPSENLSAMNPTAQRIHELTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPEL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYR 116
                P+ P  ++GGE      +V H +P LSL   ++ +         ++  F  R+  
Sbjct: 61  KL---PDSPTQRVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRN 117

Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
                      + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  
Sbjct: 118 GLN---GEQPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLR 174

Query: 177 L-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-R 234
           L   N PE+IEVRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R
Sbjct: 175 LHGENTPELIEVRGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQR 234

Query: 235 YLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIR 292
            L+FF + + +    F A+   + L   + LGF + +G          ++++Y +M+  R
Sbjct: 235 KLHFFPYSVARQQGGFVAEAHIQELAYFQELGFSLPDGNFGCFKNIGEVLAFYGQMQQKR 294

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
             LPY+IDG+V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +
Sbjct: 295 PELPYEIDGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAV 354

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPVARL+PV +GG  +TNATLHN+D +             +D+R+GD V+V+RAG+VIP+
Sbjct: 355 TPVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRIGDTVVVRRAGDVIPE 403

Query: 413 VVDIIVNERHPDA--------------------------------QPFSFPSFCPICQSR 440
           VV +I   R                                    +P+  P+ CPIC+S 
Sbjct: 404 VVRVIFERRPMQETAVAVSDGIGHRQDDLFAETPSAGQTRSVPLHKPYRLPTRCPICRSE 463

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + R+         A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +  
Sbjct: 464 IEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD-- 515

Query: 501 AFSIRIPADIF-----TLQRRQQTSTTKIENILGFGD----------------VSVTNLY 539
              +R  AD++     TLQ+ ++T+   +                            N+ 
Sbjct: 516 --LVRHFADLYRLDIPTLQKMKETADKTVAESEQMPSEVSSVGASGKHKKQPVKWAENIL 573

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE---------------- 583
             I   +   L RF+F+LGIRHVG   A++LA+ + + +   +                 
Sbjct: 574 GGIESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVA 633

Query: 584 ---------------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQA 611
                          I+ ++A         + +P                  + +  AQA
Sbjct: 634 HSIAHFFAQAEQQAMIDELLAAGVAPQAQAVSLPVAQYAEPQRWIARLPGFKISENKAQA 693

Query: 612 IVE---------------------FYQNPRNICAVEALLKEVSPSIGRHE-----KNVSS 645
           + E                     +    +N   +E L    +      E       ++ 
Sbjct: 694 LWELAGQSIKGLQNDKALPADWQAWRSETQNAVLLENLKTFFAQMPSEDETAQGSDGINE 753

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LG
Sbjct: 754 AVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALG 813

Query: 706 VKIMNEEQFLFLL 718
           V +++E + L LL
Sbjct: 814 VSVLSEAELLTLL 826


>gi|77414096|ref|ZP_00790264.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515]
 gi|77159848|gb|EAO70991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515]
          Length = 648

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/699 (31%), Positives = 365/699 (52%), Gaps = 53/699 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DS+YD L R    +    P+      PN P +++GG
Sbjct: 1   MNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG  ++
Sbjct: 58  LVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVKA-----EFPTASYMAELKIDGLSVS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  F A
Sbjct: 113 LTYVNGILQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEA 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N E  A G + +ANPRNAA+G LR+LN   +  R L  F++   + S    + Q ++L+
Sbjct: 171 INIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLY--QEASPTQKETQDDVLK 228

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           ++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG   
Sbjct: 229 ELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFTV 288

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DYI
Sbjct: 289 KAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI 348

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
                        +DIR+GD V+V +AG++IP V+++++++R+        P  CP C S
Sbjct: 349 -----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPSCGS 396

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +V   +        A RC   L C  Q  ERL HF SRDA NI G G   ++  F    
Sbjct: 397 ELVHFEDE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD--- 446

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
            A  I   ADI+ L      S   +  + G  + S T +Y +I   +  S E+ +F LGI
Sbjct: 447 -AHLIADVADIYRL------SIEDLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGLGI 499

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVG++ +R L + + + +  +Q     IA           +  +G +IA+++  F++  
Sbjct: 500 RHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIAKSLHTFFEKE 549

Query: 620 RNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                +E      V+ +      +  +++    +V TG L+K+ R++A+E +  LGA V+
Sbjct: 550 EVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVT 609

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 610 GSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 648


>gi|254368889|ref|ZP_04984902.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022]
 gi|157121810|gb|EDO65980.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022]
          Length = 678

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 395/713 (55%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  + +G+G  S+ 
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 250 F--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F   + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQI 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S++    +       A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSKIENVNDQ------AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++    +      I+ PADI+ L   Q T   ++         S  N+ DSI K + 
Sbjct: 466 AKLIEQLVAAN----LIKYPADIYKLNFEQLTGLERMAA------KSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE  L       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|332523413|ref|ZP_08399665.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176]
 gi|332314677|gb|EGJ27662.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176]
          Length = 652

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/702 (32%), Positives = 368/702 (52%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L   ++ +   YY    P + D EYD L     A+   +P+  +    + P   
Sbjct: 2   EKRIIELTNLLNQYRQEYYTNDNPTVSDQEYDKLYHELLALETEYPEFIQK---DSPTQG 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  RI     K +   + +  E KIDG 
Sbjct: 59  VGGLILSGFEKYQHPYPLYSLQDAFSQEELVAFDRRI-----KLEFPIVTYVAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y+ GK V  A RGDG  GE+++  I+ I  IP++L    P  I VRGE Y+SK+ 
Sbjct: 114 SISLNYKGGKLVTGATRGDGSVGENITENIKKIKDIPQILKE--PIDITVRGEAYMSKHS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E    G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q  
Sbjct: 172 FQMINVERQENGETEFANPRNAAAGTLRQLDTSIVGKRNLASFLY--QEASPSQESTQVA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  LGF VNN    +++   I  +  E+++ R+ LPYDIDG+V KV + ++Q++LG
Sbjct: 230 VLDKLSYLGFSVNNHRMVSSSMEDIWQFIQEIEADRAQLPYDIDGIVIKVADLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  IGRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTIGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R  D +P   P+ CP 
Sbjct: 350 DYI-----------AQKDIRIGDTVIVYKAGDIIPAVLRVVTDKR-KDQEPILIPNLCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS +    +        A RC   L C +     L+HF SR+A NI GLG   ++  F 
Sbjct: 398 CQSSLTHLEDE------VALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAVVEKLFT 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I   ADI+ L R Q  S        G  + S   L  +I   +  S E+ +F 
Sbjct: 451 AQ----LIHDVADIYRLSREQLLSLE------GIKEKSADKLLSAIADSKEKSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG + +R L + +   +   Q     IA          ++  +G +IA +I +++
Sbjct: 501 LGIRHVGEKASRLLLETFGDIETVMQSDEEAIA----------QIDGLGHVIANSIAQYF 550

Query: 617 QNPRNICAV-EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             P     + E   + ++ S      + S+ +    +V TG L+++ R +A+  +  LGA
Sbjct: 551 AKPEAQQLISELKSQGLNLSYLGQRVDQSAPLYGLTVVLTGKLEEMGRSEAKTKLENLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V++ +S+KTD+++ G + GSKL+KA+QLG++I +E+  L L
Sbjct: 611 KVTSSVSKKTDVVLAGSDSGSKLDKAKQLGIRIEDEQWLLDL 652


>gi|238854176|ref|ZP_04644523.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4]
 gi|238833252|gb|EEQ25542.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4]
          Length = 668

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/716 (30%), Positives = 368/716 (51%), Gaps = 52/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  QA +++  L +++    + YY    P++ D+ YD   +    +   FPDL  S
Sbjct: 1   MAVLTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTS 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H IP LS+  +++ ++L++F  RI +       + + +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPIPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L    P   EVR
Sbjct: 114 NVELKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +     Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD
Sbjct: 232 KN-ITSQHQAIDEMNRLGFHTNQTGRRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G +
Sbjct: 291 DLSLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LHN DY++            + +R+GD V + +AG++IP++  +++N+R  D++P
Sbjct: 351 VSRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YQIPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            +   AD++ L   Q         +  F D S+TNL  SI   + 
Sbjct: 453 PRIVKQLIDKN----FVNDVADLYHLSNEQL------SQLDHFKDKSITNLLTSIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S E  +F LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ 
Sbjct: 503 NSAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGET 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRH 664
           IA+++  ++  P     ++ L              E+   +  + K +V TG L    R 
Sbjct: 553 IAESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSDFTRS 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 613 EFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIVKIEK 668


>gi|329848744|ref|ZP_08263772.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19]
 gi|328843807|gb|EGF93376.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19]
          Length = 714

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/734 (37%), Positives = 408/734 (55%), Gaps = 46/734 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++++ AR   S L  ++ YH   YY+   P + D++YDAL+++   +   FPDL  SE  
Sbjct: 1   MTLDDARALHSELAAQVQYHRGLYYREETPELTDADYDALEKQLRDLEAQFPDLKTSE-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P   +G  ++     V H +P LSL+  +  ED+  F  RI RF +   +  + F  E
Sbjct: 59  -SPTQTVGAVISEKFSPVVHGVPMLSLDNAFADEDVTDFEDRIRRFLKLPAEEPVVFAAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PKIDG   ++ Y  G+ V  A RGDG +GEDV+  IR I  IP  LS    PE IE+RGE
Sbjct: 118 PKIDGLSCSLLYVNGELVRGATRGDGRTGEDVTENIRTIADIPHRLSGTGHPERIEIRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           +Y+    F  +N +  A G + YANPRN ASG LR+L+      R L FF +  G+ S+ 
Sbjct: 178 IYVPLQAFADMNAKAQAEGGRTYANPRNFASGSLRQLDTAVTAARPLRFFAYTWGEVSDD 237

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            FA  Q E L K R  G  VN    Q +   G++  YN +   RS L YDIDG+VYKVD 
Sbjct: 238 GFAATQTEALAKFREWGLQVNPQSAQVDGAAGLLDVYNRIGRDRSGLGYDIDGVVYKVDR 297

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++LG  +RSPRW I+HKF  +QA TRL  IDIQ+GR G +TPVARL+PVN+GG ++
Sbjct: 298 LDWQRRLGFVSRSPRWAIAHKFPAQQALTRLAAIDIQVGRMGTMTPVARLQPVNVGGVVV 357

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TN TLHN D I+            +DIR+GD V V+RAG+VIP++V I  +ER   A P+
Sbjct: 358 TNVTLHNADEIER-----------KDIRIGDMVRVQRAGDVIPQIVGIEPDERPDTAVPY 406

Query: 429 SFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            FP+ CP   ++ VVR+ N   G    A +C+G  AC  Q+ E LK+ VSR   +IEGLG
Sbjct: 407 EFPTVCPCPLKTEVVREQN-AAGTEGVARKCSGDQACPHQRTEYLKYVVSRRVLDIEGLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-----TTKIENILGFGDVSVT------ 536
           +  ++ F +       +  PADI+ L  + + +       +        + S        
Sbjct: 466 ETYIEIFNR----GGILAEPADIYRLHEKAEAAKVIVLEERKRQSAARQEKSGQAVKKQV 521

Query: 537 -----------NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                       L+ +I+ RR++ LERFI +LGI+HVG   A+ LA+ ++S + F   + 
Sbjct: 522 ADTDRAFTDLDKLFAAIDIRRDLPLERFIAALGIKHVGDTTAKLLARAFVSERAFHDTLV 581

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
                + + + S+  +  VG +IA+++  ++ +P      E  +++V         +  S
Sbjct: 582 KAAEGDEEAFNSVKDLNQVGPVIARSVTSYFAHPYQRGIYERFIEQVRVQDAEAVAST-S 640

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K +VFTGTL+K+ R +A+    +LGA VS  +S+KTD+++ G   GSKL+ A +LG
Sbjct: 641 PVSGKTVVFTGTLEKLTRDEAKAQAERLGAKVSGSVSKKTDLVVAGPGAGSKLKTAAELG 700

Query: 706 VKIMNEEQFLFLLQ 719
           ++++ E+++L L+ 
Sbjct: 701 IQVLTEDEWLSLIA 714


>gi|254445017|ref|ZP_05058493.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
 gi|198259325|gb|EDY83633.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
          Length = 668

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/709 (31%), Positives = 357/709 (50%), Gaps = 47/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S     K +  L  EI  HD+ YY+ ++P I D +YD LKR    +  A P+L      
Sbjct: 1   MSKASDLKRIEQLRAEIRRHDELYYRNAEPEISDFDYDGLKRELADLEAANPELPMEA-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P   +G +         H +P  SL+  ++ ++   F+ R+ +     +  +  FT+E
Sbjct: 59  -SPTQAVGDDRVEGFESYRHRLPMQSLDNTYSKDEFVAFVARVEKGL---EIENAHFTVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
           PKIDG  +++ YE+G+ V A  RG+G  G+DV+A  R I ++P  L  +  P++IE+RGE
Sbjct: 115 PKIDGVAVSLTYEQGELVRAVTRGNGIEGDDVTANARFIESLPGSLQGDFHPDLIEIRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           +++   +F  LN E    G + + NPRN A+G ++ L+  ++  R L+  ++GLG     
Sbjct: 175 IFMHVEEFERLNAERREAGLEQFKNPRNLAAGTIKMLDREEVAKRKLDIVLYGLGDCRPA 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E  +++   G PV     +     G  S   E+  +R    +  DG V K+D F
Sbjct: 235 VVSSQIEYRKQLVLWGLPVVERFWEVEGAEGAWSAVEELDEVRGGFAFPTDGAVVKLDSF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S Q  LG  +++PRW I+ KFA +QA T L  I IQ+GRTG LTPVA L+PV + G  ++
Sbjct: 295 SQQDALGATSKAPRWAIAVKFAAEQAETVLERITIQVGRTGTLTPVAELQPVQLAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN++ +             +D+RVGD V+V++AGE+IP VV +++ +R  ++  F 
Sbjct: 355 RATLHNQEEMAR-----------KDVRVGDTVVVEKAGEIIPAVVRVVLEKRPEESASFV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP C + V +           A RC     C  Q   RL+HF SR   +IEGLG+ 
Sbjct: 404 FPERCPACGTEVSKIEGE------VAVRCLNS-ECPDQVRGRLEHFASRQCLDIEGLGEA 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     +     +   +DI+ L+     +  K      F + S  NL  +I   + + 
Sbjct: 457 VVDQLVARKI----VSNISDIYGLEYEDMLALDK------FAEKSARNLLAAIEASKGVE 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R +  LGI  VGA  A+ LAK           +  +   +      L+ +  +G+  A
Sbjct: 507 LWRLLHGLGIPQVGASAAKDLAK----------ALGGVRELSEASVERLVEIDGIGEKTA 556

Query: 610 QAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             IV ++ + RN   V+AL    ++P          +    K  V TGTL  ++R +A+ 
Sbjct: 557 SGIVAYFGDERNKTVVDALFAAGMNPKAPERPSEADAIFAGKTFVITGTLPTMKRDEAKA 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V   G  V+  +S+KTD ++ G+  GSKL KA+ LGV +++E + L +
Sbjct: 617 LVESKGGKVAGSVSKKTDFLVAGEAAGSKLTKAESLGVTVVDEAELLKM 665


>gi|241662937|ref|YP_002981297.1| DNA ligase [Ralstonia pickettii 12D]
 gi|240864964|gb|ACS62625.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12D]
          Length = 813

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/834 (30%), Positives = 401/834 (48%), Gaps = 144/834 (17%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           ++   P    + E      + L  E++ +   YY   +P + D+EYD L R  +A+    
Sbjct: 2   RKIAEPASGTTPE---ARAAWLRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEH 58

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQK 120
           P+L   + P+ P  ++GG +      V H IP LS+    +      R F   + R    
Sbjct: 59  PEL---KTPDSPTLRVGGAVLPEFAAVRHVIPMLSIRTETDTTPNGARAFDASVRRELGL 115

Query: 121 KD-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS- 178
            D D  + +  E K DG  I++RYE+G  V AA RGDG +GEDV+  IR I  IP  LS 
Sbjct: 116 DDTDPPVEYAAELKFDGLAISLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSP 175

Query: 179 --LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
              ++P+++EVRGEVY+ ++DF  LN      G K + NPRN A+G +R+L+P     R 
Sbjct: 176 VDGHVPDVLEVRGEVYMRRDDFEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERP 235

Query: 236 LNFFVHGLGKTSEI--FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           L+FF +GLG+ +           ML  ++  GFPV+N         G+V ++  +++ R 
Sbjct: 236 LSFFAYGLGEVAGWKGMPGTHSSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAKRD 295

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
           +LP+DIDG+VYKV+  +LQ++LG R+R PRW ++HK+  ++A T +  ID+Q+GRTG +T
Sbjct: 296 SLPFDIDGVVYKVNSLALQRELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAIT 355

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVARL PV +GG  +TNATLHNED ++            +D+RVGD V+V+RAG+VIP+V
Sbjct: 356 PVARLVPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEV 404

Query: 414 VDIIVNERHPD---------------AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           V ++++ R  D                 PF  P  CP+C S VVR+         A  RC
Sbjct: 405 VSVVLDRRPMDDVPGSDLFNPQQQPKYPPFELPKTCPVCGSHVVREEGE------AVARC 458

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ-RRQ 517
           +GGL CSAQ+ E ++HF  R   +IEGLG++ +D   + +     +   AD++ L     
Sbjct: 459 SGGLFCSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELD----YVHGIADLYKLTLEDF 514

Query: 518 QTSTTKIENILGFGD----------VSVTNLYDSINKRRNISLERFIFSLGIRHV----- 562
                + +   G                 NL + I   +   L RF+F+LGIRHV     
Sbjct: 515 LEMKRRADERDGVTPETVSAGKIATKWAENLLEGIQASKTPPLARFLFALGIRHVGESTA 574

Query: 563 ---------------------------GAEIARSLAKYYLSYQNFAQEINNIIAH----- 590
                                      GA +A ++A ++   +N  Q ++ ++       
Sbjct: 575 KTLADWLGSLAMIRRAPAPLLLALPDVGATVAEAIADFFAEPKN-QQALDALLEAGVAPQ 633

Query: 591 -------------NNDDWLSLIRVPLVGDIIAQ--------------------------- 610
                           +  + + VP +    A+                           
Sbjct: 634 GEHAPNAKLREKLEPAELYATLGVPKLTATRAKQLAVAAPTLAQLASVEPDQLAGLPADV 693

Query: 611 --AIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             +++E+  +  +   +  L        +    E      +  K +V TGTL  + R +A
Sbjct: 694 TASLLEWLASHDHRAQLAKLDALRGELLAAMPAEAAEEGVLAGKTVVLTGTLPNLTRDEA 753

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +   GA VS  +S+KTD ++ G++ GSKL KA++L VK+++E   L LL++
Sbjct: 754 KAMLEAAGAKVSGSVSKKTDYVVAGEDAGSKLAKAEELNVKVLDEAGMLALLKK 807


>gi|306825169|ref|ZP_07458511.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432605|gb|EFM35579.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 652

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/701 (30%), Positives = 364/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +   +       +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKELPQP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRTSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEVSPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN+    A +   I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKHLEQLGFVVNSKRILAESMDEIWNFIQEVGQERDNLPYDIDGVVIKVNDLAGQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
             +++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 DCQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L               G  + S + LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLNEDDFLLLE------GVKEKSASKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IAQ++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   ++ L +       + +  V+   +    +V TG L+++ R +A+  +  LGA 
Sbjct: 552 TEGSKILLDELKEAGVNLDYKGQTVVADAVLSGLTVVLTGKLERLTRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KT++++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|322376748|ref|ZP_08051241.1| DNA ligase, NAD-dependent [Streptococcus sp. M334]
 gi|321282555|gb|EFX59562.1| DNA ligase, NAD-dependent [Streptococcus sp. M334]
          Length = 652

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 358/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ ++ F
Sbjct: 115 ISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRSSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I  +  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKHLEQLGFVVNPKRILAENIDEIWDFIQEVGQERDNLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R    +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKR-ISEEKLDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 DSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAT 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L+              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLKEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|187928361|ref|YP_001898848.1| DNA ligase [Ralstonia pickettii 12J]
 gi|254781397|sp|B2UB00|DNLJ_RALPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187725251|gb|ACD26416.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12J]
          Length = 817

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/836 (30%), Positives = 401/836 (47%), Gaps = 141/836 (16%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K +       S ++     + L  E++ +   YY   +P + D EYD L R  +A+  
Sbjct: 1   MSKTEEPASGPPSKDRPEARAAWLRAELNRYAHEYYVLDQPSVPDVEYDRLYRELEALET 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFW 118
             P+L   + P+ P  ++GG +      V H IP LS+    +      R F   + R  
Sbjct: 61  EHPEL---KTPDSPTLRVGGAVLPEFAAVRHVIPMLSIRTETDTTANGARAFDASVRREL 117

Query: 119 QKKD-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
              D D  + +  E K DG  I +RYE+G  V AA RGDG +GEDV+  IR I  IP  L
Sbjct: 118 GLDDTDPPVEYAAELKFDGLAINLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGL 177

Query: 178 S---LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233
           S    ++P+++EVRGEVY+ ++DF  LN      G K + NPRN A+G +R+L+P     
Sbjct: 178 SPVDGHVPDVLEVRGEVYMRRDDFEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAE 237

Query: 234 RYLNFFVHGLGKTSEI--FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           R L+FF +GLG+ +           ML  ++  GFPV+N         G+V ++  +++ 
Sbjct: 238 RPLSFFAYGLGEVAGWKGMPGTHSSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAK 297

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LP+DIDG+VYKV+  +LQ++LG R+R PRW ++HK+  ++A T +  ID+Q+GRTG 
Sbjct: 298 RDSLPFDIDGVVYKVNSLALQRELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGA 357

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARL PV +GG  +TNATLHNED ++            +D+RVGD V+V+RAG+VIP
Sbjct: 358 ITPVARLVPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIP 406

Query: 412 KVVDIIVNERH---------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           +VV ++++ R                P   PF  P  CP+C S VVR+         A  
Sbjct: 407 EVVSVVLDRRPLDDVPGSDLFNPQQQPKYPPFELPKTCPVCGSHVVREEGE------AVA 460

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ-R 515
           RC+GGL CSAQ+ E ++HF  R   +IEGLG++ +D   + +     +   AD++ L   
Sbjct: 461 RCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELD----YVHGIADLYKLTLE 516

Query: 516 RQQTSTTKIENILGFGD----------VSVTNLYDSINKRRNISLERFIFSLGIRHV--- 562
                  + +   G                 NL + I   +   L RF+F+LGIRHV   
Sbjct: 517 DFLEMKRRADERDGVTPETVSAGKIATKWAENLLEGIQASKTPPLARFLFALGIRHVGES 576

Query: 563 -----------------------------GAEIARSLAKYYLSYQNFAQEINNIIAH--- 590
                                        GA +A ++A ++   +N  Q ++ ++     
Sbjct: 577 TAKTLADWLGSLAMIRRAPAPLLLALPDVGATVAEAIADFFAEPKN-QQALDALLEAGVA 635

Query: 591 ---------------NNDDWLSLIRVPLVGDIIAQ------------------------- 610
                             +  + + VP +    A+                         
Sbjct: 636 PQGEHAPNAKLREKLEPAELYATLGVPKLTATRAKQLAVAAPTLAQLASVEPDQLAGLPA 695

Query: 611 ----AIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
               +++E+  +  +   +  L        +    E      ++ K +V TGTL  + R 
Sbjct: 696 DVTASLLEWLASHDHRAQLAKLDALRGELLAAMPAEAAEEGVLDGKTVVLTGTLPNLTRD 755

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A+  +   GA VS  +S+KTD ++ G++ GSKL KA++L VK+++E   L LL++
Sbjct: 756 EAKAMLEAAGAKVSGSVSKKTDYVVAGEDAGSKLAKAEELNVKVLDEAGMLALLKK 811


>gi|104773603|ref|YP_618583.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|122984006|sp|Q1GBF7|DNLJ_LACDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|103422684|emb|CAI97297.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 671

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/716 (29%), Positives = 366/716 (51%), Gaps = 51/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+P+L   + 
Sbjct: 2   AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPEL---KS 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +    ++GGE+N  L KV H +P LS+  +++ E+L +F  R+ +       + + + +
Sbjct: 59  ADSITQRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YE+G    A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE
Sbjct: 115 ELKIDGLSLSLEYEEGCLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
            Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++        
Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPP-A 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+ 
Sbjct: 232 GIDSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDL 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ  LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G+ + 
Sbjct: 292 ALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTVA 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+ 
Sbjct: 352 RASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYE 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C   +V            A RC    +C AQ  E + HF SR A NI GLG +
Sbjct: 401 VPTKCPSCGEDLVHLDEE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPK 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +      +     +   AD++ L             +  F + S+ NL  +I++ R  S
Sbjct: 454 IVKQLIAKD----LVHNVADLYYLTADDL------SQLDHFKEKSINNLLVAIDQSRKNS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E  +F LGI +VG + A+ +A+ + +    A          +     L  +  +G  IA
Sbjct: 504 VELVLFGLGIDNVGGKAAQLIARKFKNMSKIA----------SASVQELTAIDTIGMTIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +++  ++Q       +  L +       +G   +   +  + K +V TG L    R +  
Sbjct: 554 ESLTAYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFT 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + +  LGA V+  +S+KT+ ++ G++ GSKL KA+ L +  + E + +  +++ +T
Sbjct: 614 KKLQALGAKVTGSVSKKTNCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669


>gi|218961271|ref|YP_001741046.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans]
 gi|167729928|emb|CAO80840.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans]
          Length = 667

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/716 (32%), Positives = 370/716 (51%), Gaps = 57/716 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  + +  +  L  EI +H+  YY  +KP I D EYD L +    +   + + A  E  
Sbjct: 1   MNKNELKARIDRLRAEIEHHNRLYYTLAKPEISDYEYDMLVKELQELEAQYAEGAVEE-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  K+G ++      + H +   SLE  +++E++  FI R              +  E
Sbjct: 59  -SPTQKVGSDLTPGAKTIPHKVRMASLENAYSLEEVLAFINRTNNDLGYAS----EYCAE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I + YE G F+YA  RGDG  GEDV+   R +P +P  +  +    IE+RGE+
Sbjct: 114 LKIDGFSINLYYENGNFIYATTRGDGLEGEDVTENFRLLPDVPFTI--DYKGAIEIRGEI 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           YI   DFLALN+       K +ANPRNAA+G ++  +  ++ +R+L    + LG      
Sbjct: 172 YIPVQDFLALNEFRRENELKTFANPRNAAAGSIKLKSREEVKSRHLKALFYALGYYETPL 231

Query: 251 ------AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                    Q  +L  +  LGFP +        +     +  +M+  R T+PYDIDG+V 
Sbjct: 232 QYKNEIIDKQTRLLDFLDELGFPTSK-RTLCKHYQEAEKFCLQMEQERYTIPYDIDGIVI 290

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+    QK+LG  A+SP+W I++KF  ++  T L  +  Q+GRTG +TPVA L+PV I 
Sbjct: 291 KVNSLEDQKKLGWTAKSPKWAIAYKFKPEEKETVLESVSFQVGRTGAVTPVANLKPVFIS 350

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ +++ATLHN D IK L           D+  GD VLV ++GE+IPK++ + V++R  +
Sbjct: 351 GSTVSHATLHNADEIKRL-----------DLHYGDTVLVVKSGEIIPKILSVNVSKRPVN 399

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P  FP+ CP+C + + RD +       + + C     C AQ   +L+HF SR+A +I 
Sbjct: 400 AKPVIFPATCPVCNAPLQRDED------GSINYCPNA-NCPAQIQRKLEHFASREAMDIY 452

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG   +    ++      I+   DI+ L         KI  +   G  S  NL  +I  
Sbjct: 453 GLGSSLIARLIETGQ----IKWIPDIYHL------DYNKIAEMERMGKKSADNLQKAIEA 502

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  + +R +F+LGIRH+G+  AR+LA+++ +           +          + VP +
Sbjct: 503 SKTKNFDRVLFALGIRHIGSITARTLAQHFKNIDALIMAKEEEL----------LSVPDI 552

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G IIA++I+ F+    N   ++  L++V           S+ +  K  + TGTL    R 
Sbjct: 553 GSIIARSIIGFFSQKSNRELID-SLRKVGLQFTYISPQSSAILAGKTFLITGTLPNYSRK 611

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
             +  +T+ G  + + +S++ + +IVG+NPGSKL+KA QLG VKI++E + L +LQ
Sbjct: 612 DMETLITEHGGKILSGVSKQLNYLIVGENPGSKLDKAHQLGTVKIISEAELLDMLQ 667


>gi|332970926|gb|EGK09901.1| NAD-dependent DNA ligase LigA [Kingella kingae ATCC 23330]
          Length = 785

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/814 (31%), Positives = 385/814 (47%), Gaps = 137/814 (16%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  Q + ++  L + ++ +   YY    P + DSEYD L R  + +   FP       P
Sbjct: 1   MSNTQIQNQIKHLTEILNRYAHEYYTLDAPSVPDSEYDKLYRELEQLERDFPYFRL---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI---------EDLRKFITRIYRFWQKKD 122
             P N++GG +      V H++P LSL   ++           +   F  R+ +   +  
Sbjct: 58  ESPTNRVGGAILSEFASVRHAVPMLSLNNAFSPRDESGAYDHAETLAFNERVCKDLNQ-- 115

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNI 181
                +T+EPK DG  +++ Y+ G F+ AA RGDG  GEDV+  I+ +  IP  L   NI
Sbjct: 116 -AQTEYTIEPKFDGLAVSLLYQNGIFIQAATRGDGTIGEDVTENIKTVRNIPLKLHGKNI 174

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240
           P +IEVRGEV + K DF  LN    A G+KP+ANPRNAA+G LR+LN      R L+FF 
Sbjct: 175 PNLIEVRGEVLMLKADFATLNARQEAAGQKPFANPRNAAAGSLRQLNSRVAAERKLHFFG 234

Query: 241 HGLGKTSEI--FAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPY 297
           +G+ +   +    +   E L  ++ LGF +  G          ++  Y ++   R  LPY
Sbjct: 235 YGIARLDGVENPPQTHAEELLWLQELGFSLPTGNWHICANIAEVLQQYEQLAEKRPNLPY 294

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KV+    Q++LG  +R+PRW I+HKF  ++A T +  ID+Q+GRTG +TPVAR
Sbjct: 295 EIDGMVIKVNSLIEQEKLGFVSRAPRWAIAHKFPAEEAITIVEAIDVQVGRTGAITPVAR 354

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L+PV +GG ++TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV ++
Sbjct: 355 LQPVAVGGVVVTNATLHNQDEVAR-----------KDVRVGDSVIVRRAGDVIPEVVRVV 403

Query: 418 VNERHPDAQ----------------PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
           +  R    +                 F  P  CP+C S + R+         A  RC+GG
Sbjct: 404 LERRPMVQELGADLFSETVEKPKFSAFRLPELCPVCNSPIEREDGE------AVARCSGG 457

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
           + C AQ+ + L HF +R A +I GLG +Q++   + +     +   ADI+ L        
Sbjct: 458 MLCQAQRAQGLIHFSARKAMDIVGLGDRQIEALVEQD----VLHSFADIYQLD---IAKL 510

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            KI++          N+   I   R   L RF+F+LGIRHVG   A+ LA  +       
Sbjct: 511 QKIKDSKSSATKWAENILTGIENSRKPLLSRFLFALGIRHVGESTAKQLANAFGDLATVR 570

Query: 582 QEINNIIA------------------------------------------------HNND 593
                I+A                                                    
Sbjct: 571 HAPEPILACLPDIGGVVAQSIAHYFRQPAQQKLLDDLLAVGVEPQHAVLSTNVREFATPA 630

Query: 594 DWLSLIRVPLVGDIIAQAIVEF-----------------YQNPRNICAVEALLKEVSPSI 636
            W+S +    + +  AQ + +                  +QN  NI    ALL+EV   +
Sbjct: 631 RWISRLPNYKISEKRAQELWDLAGGSVEGLLSDKVLPIEWQNWCNIAENAALLREVGEFL 690

Query: 637 GRHEKN------------VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
               +             +++ I  K  V TGTL  ++R +A   +   G  VS  +S+K
Sbjct: 691 AMLPEFGATNAENAVLGSLNNLIAGKTFVLTGTLPTLKRDEAAAMIEAAGGKVSGSVSKK 750

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           TD ++ GD  GSKLEKA  LGV +++E++FL +L
Sbjct: 751 TDFVVAGDAAGSKLEKALSLGVAVLSEDEFLAML 784


>gi|322387936|ref|ZP_08061543.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779]
 gi|321141209|gb|EFX36707.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779]
          Length = 652

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/701 (30%), Positives = 364/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L + ++ +   YY    P + DSEYD L R    +  A+P+      P+ P +++
Sbjct: 3   ERMKELVELLNRYATEYYTSDNPSVSDSEYDRLYRELVELEIAYPEQVL---PDSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +       + + +  E KIDG  
Sbjct: 60  GGKILDGFKKYSHQYPLYSLQDAFSREELDAFDARVRKEL-----DDVTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE+G F   A RGDG  GE+++  ++ +  IP  LS  I   I VRGE Y+ ++ F
Sbjct: 115 ISLTYEQGIFAAGATRGDGSVGENITENLKRVKDIPLSLSEKI--DITVRGECYMPRDSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 NQVNLARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  +  LGF VN     A++   +  +  E+   R  LPYDIDG+V KV++ + Q+QLG 
Sbjct: 231 LNHLEQLGFVVNPRRLLAHSMDEVWEFIQEVGQERDQLPYDIDGVVIKVNDLTGQEQLGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LGIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S+++   +        A RC     C AQ  E L HF SRDA NI GLG   ++  F +
Sbjct: 399 ESKLLHFEDE------VALRCINP-QCPAQIKEGLIHFASRDAMNISGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L             + G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLT------VEDFLVLDGIKEKSAQKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S ++ AQ     +A           +  +G++IAQ++  +++
Sbjct: 502 GIRHVGSKASQLLLQHFHSIESLAQANPEEVA----------SIESLGNVIAQSLQSYFE 551

Query: 618 NPRNICAV-EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  + E     V+         V + +    +V TG L+++ R +A+  +  LGA 
Sbjct: 552 TEGAKILLSELKELGVNLDYKGQVVAVDAALSGLTVVLTGKLERLTRSEAKSKLENLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G   GSKL+KAQ+LG++I +E     L
Sbjct: 612 VTGSVSKKTDLVVAGAEAGSKLQKAQELGIEIRDEAWLEGL 652


>gi|284037426|ref|YP_003387356.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74]
 gi|283816719|gb|ADB38557.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74]
          Length = 696

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 209/735 (28%), Positives = 352/735 (47%), Gaps = 69/735 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+   ++  L   ++ ++  YYQ S   + D  +D L     A+ + +P+      P
Sbjct: 1   MNPEE---QIIDLTNRLNQYNFQYYQNSISEVDDFTFDKLLADLTALENQYPEF---RQP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG ++     V H  P LSL   ++ EDL +F  R+ +        +  +  E
Sbjct: 55  DSPTARVGGTISKEFKTVYHRFPMLSLGNTYSEEDLIEFDKRVQKGLN---GQTYEYICE 111

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI------- 184
            K DG  +++ YE G  V  A RGDG  G+D++  IR I T+P  +              
Sbjct: 112 LKFDGVALSLTYENGVLVQGATRGDGVRGDDITNNIRTIRTVPLRIGAGHKATHTQPESA 171

Query: 185 ---------IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-R 234
                     EVRGE ++   +F  +N E   +G    ANPRNAASG  ++ +   +  R
Sbjct: 172 PAVAALPALFEVRGEGFLPLAEFDRINKEREDIGEPLLANPRNAASGTFKQQDSGAVAKR 231

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L+ +++     ++IF +   E L  M   GF V+   R+      +++Y NE ++ R  
Sbjct: 232 RLDCYLYSFLSDTDIF-QTHEESLVAMNAWGFNVSPTWRKCTDIQEVMAYINEWETKRFD 290

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LP   DG+V KV+ +  Q+ LG  A+SPRW I+ K+    AST L  I  Q+GRTG +TP
Sbjct: 291 LPLGTDGIVIKVNRYDQQRDLGYTAKSPRWAIAFKYKAMAASTELNGIQYQVGRTGAVTP 350

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L PV + G ++  A+LHN + I+ L            + + D V V++ GE+IPK+ 
Sbjct: 351 VALLTPVLLAGTIVKRASLHNANEIERL-----------GVMMHDTVFVEKGGEIIPKIT 399

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            + +N R   +QP  +P+ CP C + +VR          A   C     C  Q+  R +H
Sbjct: 400 GVDLNRRTDKSQPIVYPTTCPACGTALVRKEGE------AHFYCPNEQGCPPQRQARFEH 453

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK--------IEN 526
           F+ R A NIE LG+ +++           ++ PAD++ L+        K         + 
Sbjct: 454 FIQRRAMNIESLGEGKIELLIDR----GLVQTPADLYDLKATDLLGIEKVFLVEETGKKR 509

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           ++ F + +V N+  +I + ++      +F LGIR+VG   A  L  Y+ S          
Sbjct: 510 VVSFREKTVENILTAIERSKSQPFANVLFGLGIRYVGNTTAEKLVDYFGSMD-------- 561

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVS 644
             A  N     L+ VP  G  IA+++V ++ +  N   VE L       +G  +  +   
Sbjct: 562 --AIMNATQEQLLAVPDTGPRIAESVVAWFGDTANQEFVERLRAAGLQFVGEKKVVEQEG 619

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
             +  K  ++TGT     R + +  +   G  + + +S+K + +IVG+N G SK+EKA++
Sbjct: 620 DSLTGKTFLYTGTFANFSREELESRIEANGGKLLSGISKKLNYLIVGENAGPSKVEKAKK 679

Query: 704 LGVKIMNEEQFLFLL 718
           L V ++ E++F+ +L
Sbjct: 680 LNVPMIGEDEFMAML 694


>gi|332361975|gb|EGJ39777.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK49]
          Length = 652

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/702 (32%), Positives = 360/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q E
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQVGSQEE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLADLDFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +    PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEALEVPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTIENLL------ELENFKEKSANKLYTAIQASKKNSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDILRLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|254820448|ref|ZP_05225449.1| NAD-dependent DNA ligase LigA [Mycobacterium intracellulare ATCC
           13950]
          Length = 693

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/728 (30%), Positives = 352/728 (48%), Gaps = 47/728 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   +   +      + R++   L + +  H   YY    PII D+E+D++     A+  
Sbjct: 1   MSSAEADSVAP----EVRRQWQDLAEAVREHQFRYYIKDAPIISDAEFDSMFNELLALEE 56

Query: 61  AFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             P+L  +   + P   +GG        +  H    LSL+ +++ ++L  +  R+     
Sbjct: 57  RHPELRVA---DSPTQLVGGAGFATDFAEAQHLERMLSLDDVFDRDELVAWSNRVENEVG 113

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS- 178
           K+      +  E KIDG  +++ Y  G+   AA RGDG  GEDV+   R I  +P  LS 
Sbjct: 114 KEPH----YLCELKIDGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSA 169

Query: 179 ---LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235
                 P ++EVRGEV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP    R 
Sbjct: 170 GKDFPAPSLLEVRGEVFFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARR 229

Query: 236 -LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L    HG+G+T     K Q+E    ++  G PV     +      +          R  
Sbjct: 230 KLRMICHGIGRTEGFAPKTQHEAYAALKAWGLPVAEQTARVRGLAAVEERIGYWGEHRYD 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L ++IDG+V KVD+ +LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP
Sbjct: 290 LEHEIDGVVVKVDDVALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A + PV + G+ +  ATLHN   +K            + + +GD V++++AG+VIP+V+
Sbjct: 350 FAFMTPVKVAGSTVGLATLHNAAEVKR-----------KGVLIGDTVMIRKAGDVIPEVL 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +V+ R    + F  P+ CP C + +         +  A  RC    +C AQ  ER+ H
Sbjct: 399 GPVVDLRDGSEREFVMPTTCPECDTPL-----APAKEGDADIRCPNARSCPAQLRERVFH 453

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
              R AF+IEGLG +      K+E     I    D+FTL       T       G    +
Sbjct: 454 VAGRGAFDIEGLGYEAAIALLKAE----VIADEGDLFTLTEDDLLRTELFRTKAGTLSAN 509

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L D+++K + ++L R + +L IRHVG   AR+LA  +             +A     
Sbjct: 510 GRRLLDNLDKAKKVALWRVLVALSIRHVGPTAARALATEFGDLDAIVSASTERLAA---- 565

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
                 V  VG  IA A+ E++    +   V+             + +V   +E   +V 
Sbjct: 566 ------VEGVGPTIAAALTEWFTVDWHRAIVDKWRAAGVRMADERDTSVPRTLEGLTVVV 619

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L    R  A+E +   G   +  +S+KTD ++ GD+PGSK +KA +LGV +++E+ F
Sbjct: 620 TGSLAGFSRDDAKEAILARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPVLDEDGF 679

Query: 715 LFLLQQYN 722
             LL    
Sbjct: 680 RRLLADGP 687


>gi|167627564|ref|YP_001678064.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|190359258|sp|B0TY02|DNLJ_FRAP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167597565|gb|ABZ87563.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 678

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/726 (36%), Positives = 402/726 (55%), Gaps = 56/726 (7%)

Query: 1   MKKRQLIPIE--ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           M     I I+   L+  Q +  +  L + +      Y+   KP+I DS+YD L R    +
Sbjct: 1   MTPSDFISIDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
               P L  S   N  L+++GGE+      + H     SL  ++++E+LR F  +I    
Sbjct: 61  VDDNPQLKPS---NSVLDRVGGEILAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--- 114

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL- 177
                  I    EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L 
Sbjct: 115 -----YDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169

Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236
           + N PE +EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L
Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229

Query: 237 NFFVHGLGKTSEIF--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
             + +G+G  S+ F   + Q+E++  ++  GF +++ +  A  F  +  Y+++M   R+ 
Sbjct: 230 KLYSYGIGYFSKDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRAD 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDGLV+KV+   LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TP
Sbjct: 290 LAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG +++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV
Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVV 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R PDAQ    P+ CP+C S +    +       A +RCTGG  C AQ  ERLKH
Sbjct: 399 KSLPQYRKPDAQMVEMPTNCPVCDSAIENINDQ------AIYRCTGGWHCQAQTTERLKH 452

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I+ LG + ++        A  I+ PADI+ L   Q T   ++         S
Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AADLIKYPADIYKLNFEQLTGLERMGA------KS 502

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N+ DSI K +  SL RFIF++GI+ VG   + +LA ++ S ++F +            
Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------K 552

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKL 652
           +  LI +  +G+IIA+ IV F+Q+  NI  V+          +  + E+  +    NK +
Sbjct: 553 FEQLIEINDIGEIIAKNIVSFWQDSLNIQIVDELLGNSINIQNPEKIEQAHNESFTNKTI 612

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGT +   R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ LGV+++ EE
Sbjct: 613 VITGTFENYNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTKAQDLGVEVIFEE 672

Query: 713 QFLFLL 718
               LL
Sbjct: 673 DLQNLL 678


>gi|313890529|ref|ZP_07824157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121046|gb|EFR44157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026]
          Length = 652

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/702 (32%), Positives = 373/702 (53%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L   ++ +   YY    P + D EYD L     A+   +P+L +    + P   
Sbjct: 2   EKRIIELTNLLNQYRQEYYTNDNPTVSDQEYDKLYHELLALETEYPELIQK---DSPTQG 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+     K +  ++ +  E KIDG 
Sbjct: 59  VGGLILSGFEKYQHPYPLYSLQDAFSQEELFAFDRRV-----KLEFPTVTYVAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y++GK V  A RG+G  GE+++  I+ I  IP+ L    P  I VRGE Y+SK+ 
Sbjct: 114 SISLDYKEGKLVTGATRGNGSVGENITENIKKIKDIPQTLKD--PIDITVRGEAYMSKHS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E    G   +ANPRNAA+G LR+L+ + ++ R L  F++     S+     Q  
Sbjct: 172 FQMINIERQESGEAEFANPRNAAAGTLRQLDTSIVSKRNLASFLYQEASPSQEI--TQVA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  LGF VN     +++   I  +  E++  R+ LPYDIDG+V KVD+ ++Q++LG
Sbjct: 230 VLDKLSHLGFSVNKHRMVSSSMEDIWQFIQEIEPDRAQLPYDIDGIVIKVDDLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  IGRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTIGRTGVVTPTANLRPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R  + +P   P+ CP 
Sbjct: 350 DYI-----------AQKDIRIGDTVIVYKAGDIIPAVLRVVTDKR-KNQEPILIPNLCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS +    +        A RC   L C +     L+HF SR+A NI GLG   ++  F+
Sbjct: 398 CQSSLTHLEDE------VALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAVVEKLFR 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I   ADI+ L R Q  S        G  + S   L  +I   +  S E+ +F 
Sbjct: 451 AQ----LIHDVADIYKLSREQLLSLE------GIKEKSADKLLSAIADSKEKSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG + +R L + +   +   Q   + IA          ++  +G +IA ++ +++
Sbjct: 501 LGIRHVGEKASRLLLETFGDIETLMQSNEDAIA----------QIDGLGHVIANSLAQYF 550

Query: 617 QNPRNICAV-EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             P     + E   + ++ +      + S+ +    +V TG L+++ R +A+  + +LGA
Sbjct: 551 AKPEAQQLISELKCQGLNLTYLGQRVDQSAPLYGLTVVLTGKLEEMGRSEAKTKLEKLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V++ +S+KTD+++ G + GSKL+KA+QLG+++ +E+  L L
Sbjct: 611 KVTSSVSKKTDVVLAGSDSGSKLDKARQLGIRVEDEQWLLDL 652


>gi|332359434|gb|EGJ37254.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK355]
          Length = 652

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/702 (32%), Positives = 362/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIVFDQRIRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q E
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQVGSQEE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLADLDFSVNPTRILADSIQAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +P   PS+CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEPLEIPSYCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYTAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVTGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|311233982|gb|ADP86836.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris RCH1]
          Length = 818

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/726 (33%), Positives = 377/726 (51%), Gaps = 58/726 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E+AR+  + L  ++  H+  YY+   P I D+EYDAL R    +   +P L    D   
Sbjct: 55  PEEARQRAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPAL---RDEAS 111

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE+   L K  H++   SL+  ++ ++   FI R+Y       D    F  +PK
Sbjct: 112 PTQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFIQRMYNALP---DAPSAFWCDPK 168

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  + + YE G F  A  RG+G  GE V+A +R +  +P  L   ++P  IEVRGEV 
Sbjct: 169 MDGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVV 228

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG----KTS 247
           I+K DF  LN    A G K +ANPRNAA+G +R+L+ T    R L F  +G+G    +  
Sbjct: 229 IAKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGG 288

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                    ++ ++R  GF      R   +   + +YY  + + R +L  +IDG+V K+D
Sbjct: 289 TAPWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLD 348

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q+ LG  AR+PRW ++ KF   QA TRL DI +Q+GRTG+LTPVA LEPV +GG  
Sbjct: 349 DTEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVE 408

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED I+            + + +GD VLV+RAG+VIP+VV  +V ER  D +P
Sbjct: 409 VSRATLHNEDEIRA-----------KGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERP 457

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S VVR           AHRC   + C A + + + HFVS+   ++ G+G
Sbjct: 458 FVFPENCPECDSPVVRPQGE------VAHRCVNVM-CPAVRRQSIIHFVSKAGLDVRGVG 510

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +            +  P  +F L +       ++      G  S  N   +++  R 
Sbjct: 511 ERWVQQLVD----GGHVTSPVGLFLLTKLDLMRFERM------GPTSAANFVTALDAART 560

Query: 548 -ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L R I +LGIRHVG + AR+LA  +              A    D  +L ++P +G 
Sbjct: 561 GATLVRLICALGIRHVGEQTARTLAANFTDLD----------ALREADAETLQQLPDIGP 610

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +A +I  F+ N  N+  +E L           +P        +   ++  K++FTG+L 
Sbjct: 611 EVAGSIRSFFANEGNLELLERLRAIGLWPKRQDAPPASEGADAIVLPLQGLKVLFTGSLT 670

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R +A++     GA +++ +++  D+++VG  PGSKLEKA++LG+++M E  F  +L 
Sbjct: 671 RVGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAMLA 730

Query: 720 QYNTTL 725
               ++
Sbjct: 731 SGVASV 736


>gi|94676849|ref|YP_588544.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|123260587|sp|Q1LU20|DNLJ_BAUCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94219999|gb|ABF14158.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 671

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/709 (35%), Positives = 388/709 (54%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++Q  + +  L Q++ Y +  YY    P + D EYD L  +   +   +PDL  +   + 
Sbjct: 1   MKQIEQYIEQLRQQLRYWNFLYYAKDAPEVSDVEYDWLMMKLRELERQWPDLKTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   IG +      KV H +P LSL+ I+N      F  RI    Q   +N + +  E K
Sbjct: 58  PTQHIGYKAQSKFRKVIHEVPMLSLDHIFNDTSFLAFDRRIRNRLQ-YGNNYLTYCCELK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEV 191
            DG  +++ Y+ GK + AA RGDGH GEDV+  IR I +IP  L  +  IP +IE+RGEV
Sbjct: 117 FDGIAVSLLYKHGKLIRAATRGDGHIGEDVTDNIRTICSIPLQLKDDGHIPRLIEIRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEI 249
            +S++ F  LN+       K +ANPRNAA+G LR+++P+   TR L+FF +G+G+  S+ 
Sbjct: 177 IMSEDAFRHLNETAKKNKSKRFANPRNAAAGSLRQVDPSITATRLLSFFCYGVGRIDSKK 236

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E+LQ+ +  G PV+N  R       ++ +Y+ +  +RS L ++IDG+V KV+  
Sbjct: 237 IPAAHLELLQQFKIWGLPVSNYRRYCVGHQEVLDFYSYVSKVRSKLGFNIDGIVIKVNAL 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW I++K    +  T + +ID Q+GRTGI+TPVARL+PV I GA I+
Sbjct: 297 VQQQQLGFVARAPRWAIAYKLPANEQLTEIQNIDFQVGRTGIITPVARLKPVYISGAYIS 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NA+LH+   IK L            +R+GD V+++ AG +IP++V+++V++R     P  
Sbjct: 357 NASLHSFAEIKRL-----------GLRIGDTVVIRLAGNIIPQIVNVVVSKRSIKTSPVL 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           +P +CP+C S+V ++   KT        CT G+ CSAQ  E LKHFVSR A NI G+G +
Sbjct: 406 YPLYCPVCGSKVKQNNKEKTII------CTAGMICSAQLKEALKHFVSRRAMNIYGMGGK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     +     I+ P D+F L + Q T    +             L D+I   +  +
Sbjct: 460 IIDQLVDLKI----IQNPVDLFRLNQDQLTCLKNMGQ------KKTKKLLDAIEYAKKTT 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF++++GIR +G   A  LA YY       + I+ ++A    D  SL ++  +G I+A
Sbjct: 510 FARFLYAIGIREIGETKAAYLADYY-------KHIDALMAA---DIESLTKIQDIGIIVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
             ++ F+ N  NI  +E L               ++    K +VFTGTL  + R +A + 
Sbjct: 560 TNVLNFFHNKHNIAIIEELCSPKIGIKFLSTLEKNNYFSGKNIVFTGTLAFLSREEAIDM 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA + + +S K D++I G N G KL KA+QL +KI+ E +F  +L
Sbjct: 620 LIALGARIRSSVSSKIDLLIAGKNTGFKLTKAKQLQIKIIEEAEFYQIL 668


>gi|89256066|ref|YP_513428.1| DNA ligase [Francisella tularensis subsp. holarctica LVS]
 gi|167009870|ref|ZP_02274801.1| DNA ligase [Francisella tularensis subsp. holarctica FSC200]
 gi|254367402|ref|ZP_04983428.1| DNA ligase [Francisella tularensis subsp. holarctica 257]
 gi|123401612|sp|Q2A4C4|DNLJ_FRATH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89143897|emb|CAJ79115.1| DNA ligase [Francisella tularensis subsp. holarctica LVS]
 gi|134253218|gb|EBA52312.1| DNA ligase [Francisella tularensis subsp. holarctica 257]
          Length = 678

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/713 (36%), Positives = 395/713 (55%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  + +G+G  S+ 
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 250 F--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F   + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQI 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S++    +       A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSKIENVNDQ------AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++    +      I+ PADI+ L   Q T   ++         S  N+ DSI K + 
Sbjct: 466 AKLIEQLVAAN----LIKYPADIYKLNFEQLTGLERMAA------KSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINYIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           IA  IV F+ +  NI  VE  L       +  + E   +     K +V TG+ +   R +
Sbjct: 566 IANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|156502078|ref|YP_001428143.1| DNA ligase [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|290954221|ref|ZP_06558842.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1]
 gi|295312341|ref|ZP_06803126.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1]
 gi|166214810|sp|A7NB34|DNLJ_FRATF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156252681|gb|ABU61187.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 678

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 395/713 (55%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  + +G+G  S+ 
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 250 F--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F   + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+K++
Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKIN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQI 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S++    +       A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSKIENVNDQ------AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++    +      I+ PADI+ L   Q T   ++         S  N+ DSI K + 
Sbjct: 466 AKLIEQLVAAN----LIKYPADIYKLNFEQLTGLERMAA------KSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINYIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           IA  IV F+ +  NI  VE  L       +  + E   +     K +V TG+ +   R +
Sbjct: 566 IANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|208779663|ref|ZP_03247008.1| DNA ligase, NAD-dependent [Francisella novicida FTG]
 gi|208744624|gb|EDZ90923.1| DNA ligase, NAD-dependent [Francisella novicida FTG]
          Length = 678

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 395/713 (55%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  + +G+G  S+ 
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 250 F--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F   + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQM 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S +    +       A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSAIENVNDQ------AIYRCTGGWHCQAQTTERLKHFVSRKATDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++    +      I+ PADI+ L   Q T   ++         S  N+ DSI K + 
Sbjct: 466 AKLIEQLVAAN----LIKYPADIYKLNFDQLTGLERMGA------KSSQNVLDSIKKSKT 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE LL       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|315223028|ref|ZP_07864907.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211]
 gi|315187978|gb|EFU21714.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211]
          Length = 652

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/702 (30%), Positives = 357/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ +   YY    P + DSEYD L      +   +P+L ++   + P ++
Sbjct: 2   KDRMLELVKLLNQYAHEYYTTDNPTVSDSEYDRLYHELLDLEQQYPELVQA---DSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     D   + +  E KIDG 
Sbjct: 59  VGGKVLEGFEKYQHQYPLYSLQDAFSREELEAFDVRIRK-----DFPKVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP VL   +   + VRGE Y+ ++ 
Sbjct: 114 SISLMYEKGILVAGATRGDGSVGENITENLKRVKDIPLVLPTAV--NLTVRGECYMPRSS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q  
Sbjct: 172 FDRVNRLRQENGEPEFANPRNAAAGTLRQLDTAIVAKRNLATFLY--QEASPTSATSQEA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++   GF VN     A++   +  +  ++   R  LPYDIDG+V KV++  +Q++LG
Sbjct: 230 VLNQLSKNGFSVNERHILAHSMDEVWQFIGQIAQERDQLPYDIDGVVIKVNDLVMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR GD V+V +AG++IP V+ ++ ++R    +    P  CP 
Sbjct: 350 DYI-----------AEKDIRKGDTVIVYKAGDIIPAVLQVVESKR-QSEEKLEIPKNCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC     C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CNSELIHFEDE------VALRCINPR-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFD 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     +   A I+ L             +  F + S   LY +I   +  S E+ +F 
Sbjct: 451 QQ----LVNDVAGIYRLTVEDLL------QLENFKEKSANKLYTAIQASKENSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ ++ L K++   +  A+     IA           +  +G +IA+++  ++
Sbjct: 501 LGIRHVGSKASQILLKHFHDLEQLAKAEKEEIAA----------LDSLGMVIAESLSSYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q   +I   E     ++ +    +    + +    +V TG L+++ R +A++ +  LGA
Sbjct: 551 AQEGTHILLSELKEAGLNFTYLGEKVAADAVLSGLTVVLTGKLERLNRSEAKKKLESLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V++ +S+KT +++ G + GSKL KAQ+LG+ I +E     L
Sbjct: 611 KVTSSVSKKTSLVVAGADAGSKLTKAQELGIDIRDEAWLENL 652


>gi|118497929|ref|YP_898979.1| DNA ligase [Francisella tularensis subsp. novicida U112]
 gi|194323151|ref|ZP_03056935.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida
           FTE]
 gi|166215758|sp|A0Q7L0|DNLJ_FRATN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118423835|gb|ABK90225.1| DNA ligase [Francisella novicida U112]
 gi|194322515|gb|EDX19995.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida
           FTE]
          Length = 678

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 394/713 (55%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAEFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  + +G+G  S+ 
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 250 F--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F   + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQM 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S +    +       A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSAIENVNDQ------AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++    +      I+ PADI+ L   Q T   ++         S  N+ DSI K + 
Sbjct: 466 AKLIEQLVAAN----LIKYPADIYKLNFDQLTGLERMGA------KSSQNVLDSIKKSKT 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   +  LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDVLANHFGSLESFRDA----------KFEELIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE LL       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|271969279|ref|YP_003343475.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
 gi|270512454|gb|ACZ90732.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
          Length = 726

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/749 (28%), Positives = 357/749 (47%), Gaps = 67/749 (8%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           + +P+ AL         + L + +   +  Y+    P + D++YD   R    I    P 
Sbjct: 6   EGVPVAALD------RHAELTELVEQANWRYHVLDSPTVSDAQYDTWMRELRGIEEEHPS 59

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L     P+ P  K+G  ++     V H     SL+  +N +DL  +  R  R  ++   +
Sbjct: 60  L---RTPDSPTQKVGAPISSDFTPVAHLQRMESLDNAFNADDLASWQARAERLAER---D 113

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPE 183
              +  E KIDG  I + YEKG+ V  A RGDG  G+DV+A +R +  +P  L   ++P+
Sbjct: 114 PAPYLCELKIDGLAIALVYEKGRLVRGATRGDGRVGDDVTANVRTVAGVPHRLAGDDVPD 173

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
           ++E+RGEVY+  + F+ LN++++A G+ P+ANPRN+A+G LR  +P     R L+  VHG
Sbjct: 174 LVEIRGEVYMPVDGFVKLNEQLVAAGKAPFANPRNSAAGSLRMKDPRITAQRPLHLIVHG 233

Query: 243 LGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           +G+       + Q  + +++R  G PV++  +  +   GI ++    +  R    Y+IDG
Sbjct: 234 VGRWEGTALPRTQSGVYERLREFGLPVSDLYKVVDDLDGINAFIEFYREHRHDPAYEIDG 293

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVD   LQ  LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP   +EP+
Sbjct: 294 VVVKVDRIELQNNLGSTSRAPRWAIAYKYPPEEVNTKLLDIQVGVGRTGRVTPYGVMEPI 353

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN   +             + +R+GD V++++AG+VIP++V  +V+ R
Sbjct: 354 VVAGSTVERATLHNGSEVAR-----------KGVRIGDTVVLRKAGDVIPEIVGPVVDLR 402

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F+ P+ CP C + +         +  A  RC    AC AQ  ER+     R A 
Sbjct: 403 DGTEREFTMPTHCPECGTAL-----AYEKEGDADLRCPNTRACPAQLRERIFFAAGRRAL 457

Query: 482 NIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTLQ-----------RRQQTSTTK------ 523
           +IEGLG        +   P    +R  AD+F L            R   T   K      
Sbjct: 458 DIEGLGYVAATALTQPLPPQEPPVRTEADLFDLTIERLLPIRSVVRDPDTGLPKTDPETG 517

Query: 524 -------IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                    N  G    +   + + + K ++  + R + +L IRHVG   A+++A  + S
Sbjct: 518 DPKVVAFFANQSGEPSKNAEKMLEELEKAKDQPVWRVLVALSIRHVGPPTAQAIAAEFRS 577

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
               A      +A              VG  +A AI ++++   +   V+          
Sbjct: 578 IDAIAAASEEELAAVE----------GVGPRVAAAIRDWFEVDWHREIVDRWKAAGVRME 627

Query: 637 GRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
                  +   +     V TGTL+   R +A   +   G  VS+ +S+KT  ++ G+N G
Sbjct: 628 DEPPTDQLPQTLAGLTFVVTGTLEAFTRDEAGAALAARGGKVSSSVSKKTAFLVAGENAG 687

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           SK +KA +LGV I++EE    LL +    
Sbjct: 688 SKFDKAVKLGVPILDEEGLRVLLAEGPEA 716


>gi|46580019|ref|YP_010827.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81404693|sp|Q72BM7|DNLJ_DESVH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46449435|gb|AAS96086.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 799

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/726 (33%), Positives = 377/726 (51%), Gaps = 58/726 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E+AR+  + L  ++  H+  YY+   P I D+EYDAL R    +   +P L    D   
Sbjct: 36  PEEARQRAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPAL---RDEAS 92

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE+   L K  H++   SL+  ++ ++   FI R+Y       D    F  +PK
Sbjct: 93  PTQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFIQRMYNALP---DAPSAFWCDPK 149

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  + + YE G F  A  RG+G  GE V+A +R +  +P  L   ++P  IEVRGEV 
Sbjct: 150 MDGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVV 209

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG----KTS 247
           I+K DF  LN    A G K +ANPRNAA+G +R+L+ T    R L F  +G+G    +  
Sbjct: 210 IAKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGG 269

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                    ++ ++R  GF      R   +   + +YY  + + R +L  +IDG+V K+D
Sbjct: 270 TAPWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLD 329

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q+ LG  AR+PRW ++ KF   QA TRL DI +Q+GRTG+LTPVA LEPV +GG  
Sbjct: 330 DTEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVE 389

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED I+            + + +GD VLV+RAG+VIP+VV  +V ER  D +P
Sbjct: 390 VSRATLHNEDEIRA-----------KGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERP 438

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S VVR           AHRC   + C A + + + HFVS+   ++ G+G
Sbjct: 439 FVFPENCPECDSPVVRPQGE------VAHRCVNVM-CPAVRRQSIIHFVSKAGLDVRGVG 491

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +            +  P  +F L +       ++      G  S  N   +++  R 
Sbjct: 492 ERWVQQLVD----GGHVTSPVGLFLLTKLDLMRFERM------GPTSAANFVTALDAART 541

Query: 548 -ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L R I +LGIRHVG + AR+LA  +              A    D  +L ++P +G 
Sbjct: 542 GATLVRLICALGIRHVGEQTARTLAANFTDLD----------ALREADAETLQQLPDIGP 591

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +A +I  F+ N  N+  +E L           +P        +   ++  K++FTG+L 
Sbjct: 592 EVAGSIRSFFANEGNLELLERLRAIGLWPKRQDAPPASEGADAIVLPLQGLKVLFTGSLT 651

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R +A++     GA +++ +++  D+++VG  PGSKLEKA++LG+++M E  F  +L 
Sbjct: 652 RVGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAMLA 711

Query: 720 QYNTTL 725
               ++
Sbjct: 712 SGVASV 717


>gi|307708748|ref|ZP_07645210.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261]
 gi|307615114|gb|EFN94325.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261]
          Length = 652

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/701 (30%), Positives = 359/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASLSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKHLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R    +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKR-ISEEKLDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSVVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S + LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSASKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|239906999|ref|YP_002953740.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1]
 gi|239796865|dbj|BAH75854.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1]
          Length = 704

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/732 (33%), Positives = 360/732 (49%), Gaps = 63/732 (8%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +I +  +        L  L   I  +D  YY    P + D+ YDAL R   A+  A P+L
Sbjct: 1   MIAVSTIDPA---ARLRELRDLIHEYDYRYYVLDDPTVEDAAYDALYRELKALEEAHPEL 57

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-- 123
           A   DPN P  ++GG +        H     SL+     ++ R F+TR     ++     
Sbjct: 58  A---DPNSPTRRVGGAVLEGFASKPHRRRMYSLDNAMAEDEWRDFVTRAANKLERDGVAF 114

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------ 177
           ++  F ++PK DG  + I YE G +  A  RGDG  GEDV+  +R +  +P  L      
Sbjct: 115 DAPAFWVDPKFDGLALEIIYENGVYAGALTRGDGEVGEDVTENVRTVRNVPLDLRPHAAR 174

Query: 178 -SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235
             L +P ++EVRGEV +++ DF  LN+     G K +ANPRNAA+G +R+L+     TR 
Sbjct: 175 AGLPVPRLLEVRGEVVMTRQDFYELNERQREQGGKVFANPRNAAAGSVRQLDSRISATRP 234

Query: 236 LNFFVHGLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
           L FF + +G                  ++  ++ LG PV    +   T   +  Y+  M 
Sbjct: 235 LTFFTYAVGSQDWGDGLAGPGWATHSAVMAGLKALGLPVAGQGKVV-TADEVYPYFEAMG 293

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  LP++IDG+V KVD  +LQ+ LG   R+PR+ ++ KF   +A T L  ID+Q+GRT
Sbjct: 294 RQRQELPFEIDGVVVKVDSLALQEALGFTDRAPRFAVALKFPAHEAETVLKHIDVQVGRT 353

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G+LTPVA LEPV++ G  +  ATLHNED IK            +D+R GD V+V+RAG+V
Sbjct: 354 GVLTPVAILEPVSLAGVTVARATLHNEDEIKA-----------KDLRPGDTVVVRRAGDV 402

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IP+VV ++ ++R  +A+P+ FP  CP C S  VR      G+  AA RC   LAC A   
Sbjct: 403 IPEVVRVVEDKRPAEAEPYDFPHVCPSCGSDAVR------GEGEAAWRCVN-LACPAMLR 455

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
             + +FVS+   +IEGLG + +            ++ PAD+F L         ++     
Sbjct: 456 RGISYFVSKSGLDIEGLGAKWVAALIDKGM----VKSPADLFDLTEADLLPLERMAEKSA 511

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
              V+            + SL + I +LGIR VG   AR+LA ++              A
Sbjct: 512 ANFVAAVAAAKQ-----SASLVKLIAALGIRQVGTRTARTLAGHFHDLD----------A 556

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSE 646
                   L  +P +G  +A +I EF+ N  N   +E         +G        V + 
Sbjct: 557 LGAASLEELTALPDIGPEVAGSIREFFANEANRELLERFKGIGLWPVGEAKPETPAVQTA 616

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K+ +FTG L  + R  AQ+ V   G VV   +S+K D ++ G +PGSKL KAQ LG+
Sbjct: 617 LTGKRFLFTGALPDLTREAAQKLVEAAGGVVVGSVSKKLDYLVAGADPGSKLAKAQALGI 676

Query: 707 KIMNEEQFLFLL 718
            I++ E F  LL
Sbjct: 677 TILSPEAFAALL 688


>gi|307706499|ref|ZP_07643306.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321]
 gi|307617954|gb|EFN97114.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321]
          Length = 652

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 360/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DQVNQARQENGESEFANPRNAAAGTLRQLDTAVVATRNLATFLY--QEASPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKHLEQLGFVVNPKRILAENIDEIWNFIQEVGEERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    PS CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRLSEEK-LDIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRD  NI GLG   ++  F +
Sbjct: 399 DSHLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDTMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L+              G  + S + LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLKEEDFLLLE------GVKEKSASKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQA----------DSDEVASIESLGSVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   ++      V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLKELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKNKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|297191909|ref|ZP_06909307.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721112|gb|EDY65020.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 736

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/742 (30%), Positives = 354/742 (47%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             QAR+E + L ++I  H   YY    P+I D+E+D L R  + +   +P+L     P+ 
Sbjct: 19  PAQAREEHALLAEQIEEHRFRYYVKDSPVISDAEFDKLLRELEGLEERYPEL---RTPDS 75

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G+    L KV H    LSL+  ++  +L  +  R+ R       +   F  E K
Sbjct: 76  PTQKVAGDYETELTKVEHRERMLSLDNAFDDAELAAWAERVARDVGAPGYH---FLCELK 132

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YEKG+   AA RGDG  GED++   R I  IP  L  + IP ++E+RGEVY
Sbjct: 133 VDGLAVNLTYEKGRLTRAATRGDGRVGEDITPNARTIAGIPDRLGGDRIPRLVEIRGEVY 192

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN   +A G +PYANPRN+ASG LR+ +P    T  L   VHG+G    +  
Sbjct: 193 FPMEQFQELNARRVAAGEQPYANPRNSASGSLRQKDPKVTATLPLRMVVHGIGAREGLTI 252

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               +    +R  G P     +   +   +  +       R ++ ++IDG+V K+DE  L
Sbjct: 253 DRLSQAYDLLREWGLPTARHNKVVGSLEEVREFIAYFGEHRHSVEHEIDGVVVKLDEIPL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  AR+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  A
Sbjct: 313 QGRLGSTARAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    + F  P
Sbjct: 373 TLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC    +C AQ  ERL +   R A +IE  G    
Sbjct: 422 AECPECGTAL-----RPMKEGDVDLRCPNARSCPAQLRERLFYLAGRKALDIEHFGYVAA 476

Query: 492 DFFFKSEDPAF-SIRIPADIFTLQRRQQTST------------------------TKIEN 526
               +  +PA   +    D+F L   Q                            T   N
Sbjct: 477 AALTQPLEPAEPPLVDEGDLFDLTMEQLLPIKAYVLDQDSGLPKRDPKTGEDKIATVFAN 536

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + ++I   +   L R I  L IRHVG   A +LA+ + S     Q    
Sbjct: 537 QKGEPRRNAVAMLENIAAAKERPLARIITGLSIRHVGPVAAEALAREFRSIDRIEQATEE 596

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVS 644
            +A           V  VG  IA A+ ++++   +   +         +   G  E    
Sbjct: 597 ELAA----------VDGVGPTIAAALKQWFEEDWHREILRKWRAAGVRTEEHGSGEDAGP 646

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL+   R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 647 RPLEGLTVVVTGTLENHTRDGAKEALQSLGAKVAGSVSKKTSFVVVGDNPGSKYDKAVQL 706

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
            V +++E  F  LL++     R
Sbjct: 707 KVPVLDESGFAVLLEEGPEAAR 728


>gi|146318834|ref|YP_001198546.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05ZYH33]
 gi|166216250|sp|A4VVK7|DNLJ_STRSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145689640|gb|ABP90146.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus suis 05ZYH33]
          Length = 652

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/702 (30%), Positives = 360/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +S L   ++ +   YYQ  +P + D+EYD L R    +  A P+L     P+ P ++
Sbjct: 2   KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+M     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG 
Sbjct: 59  VGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRK-----EFPQATYICELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  +P  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAV--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N +    G   + NPRNAA+G LR+L+   +  R L  F++   + S   A  Q +
Sbjct: 172 FDRVNKQRQEAGEAEFVNPRNAAAGTLRQLDTGVVAQRGLATFLY--QEASPSEATSQSQ 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+K+  LGF  N+    A +      +  ++   R  LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 VLEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW +++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++   R         PS CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQE-IMPIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS +    +        A RC   + C +Q + +L+HF SRDA NI GLG   ++  F 
Sbjct: 398 CQSDLQHYEDE------VALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L      +        GF + S   LY +I   ++ S E  +F 
Sbjct: 450 ---GAGLVHDVADIYKLTVDDLLTLE------GFKEKSANKLYQAIQTSKSNSAECLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ ++ L + +   +  A      IA           +  +G +IA+++  F+
Sbjct: 501 LGIRHVGSKASKILVEKFGDLETLAFADQEAIA----------SLEGLGQVIAKSLTTFF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            +      +      +V+ +      + ++ +    +V TG L++++R++A+  +  LGA
Sbjct: 551 ASEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KT++++ G + GS L KAQ+LG++I +E     L
Sbjct: 611 NVAGSVSKKTNLVVAGTDAGSTLTKAQELGIEIKDEAWLESL 652


>gi|120602570|ref|YP_966970.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
 gi|166215379|sp|A1VDM7|DNLJ2_DESVV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|120562799|gb|ABM28543.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
          Length = 797

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/720 (33%), Positives = 376/720 (52%), Gaps = 58/720 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E+AR+  + L  ++  H+  YY+   P I D+EYD L R    +   +P L    D   
Sbjct: 36  PEEARQRAAQLRADLERHNRLYYELDTPEISDAEYDVLYRELVGLERRWPAL---RDEAS 92

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE+   L K  H++   SL+  ++ ++   F+ R+Y       D    F  +PK
Sbjct: 93  PTQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFMQRMYNALP---DAPSAFWCDPK 149

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  + + YE G F  A  RG+G  GE V+A +R +  +P  L   ++P  IEVRGEV 
Sbjct: 150 MDGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVV 209

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG----KTS 247
           I+K DF  LN    A G K +ANPRNAA+G +R+L+ T    R L F  +G+G    +  
Sbjct: 210 IAKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGG 269

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                    ++ ++R  GF      R   +   + +YY  + + R +L  +IDG+V K+D
Sbjct: 270 TAPWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLD 329

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q+ LG  AR+PRW ++ KF   QA TRL DI +Q+GRTG+LTPVA LEPV +GG  
Sbjct: 330 DTEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVE 389

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED I+            + + +GD VLV+RAG+VIP+VV  +V ER  D +P
Sbjct: 390 VSRATLHNEDEIRA-----------KGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERP 438

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S VVR           AHRC   + C A + + + HFVS+   ++ G+G
Sbjct: 439 FVFPENCPECDSPVVRPQGE------VAHRCVNVM-CPAVRRQSIIHFVSKAGLDVRGVG 491

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +            +  P  +F+L +       ++      G  S  N   +++  R 
Sbjct: 492 ERWVQQLVD----GGHVTSPVGLFSLTKLDLMRFERM------GPTSAANFVTALDAART 541

Query: 548 -ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L R I +LGIRHVG + AR+LA  +              A    D  +L ++P +G 
Sbjct: 542 GATLVRLICALGIRHVGEQTARTLAANFTDLD----------ALREADAETLQQLPDIGP 591

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +A +I  F+ N  N+  +E L           +P        +   ++  K++FTG+L 
Sbjct: 592 EVAGSIRTFFANEGNLELLERLRAIGLWPKRQDAPPAPEGADAIVRPLQGLKVLFTGSLT 651

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R +A++     GA +++ +++  D+++VG  PGSKLEKA++LG+++M E  F  +L+
Sbjct: 652 RVGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAMLE 711


>gi|116513594|ref|YP_812500.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275636|sp|Q04BW0|DNLJ_LACDB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116092909|gb|ABJ58062.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 671

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/716 (29%), Positives = 366/716 (51%), Gaps = 51/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+ +L   + 
Sbjct: 2   AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYSEL---KS 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +    ++GGE+N  L KV H +P LS+  +++ E+L +F  R+ +       + + + +
Sbjct: 59  ADSITQRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YE+G+   A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE
Sbjct: 115 ELKIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
            Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++        
Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPP-A 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+ 
Sbjct: 232 GIDSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDL 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ  LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G+ + 
Sbjct: 292 ALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTVA 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+ 
Sbjct: 352 RASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYE 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C   +V            A RC    +C AQ  E + HF SR A NI GLG +
Sbjct: 401 VPTKCPSCGEDLVHLDEE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPK 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +      +     +   AD++ L             +  F + S+ NL  +I++ R  S
Sbjct: 454 IVKQLIAKD----LVHNVADLYYLTADDL------SQLDHFKEKSINNLLVAIDQSRKNS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E  +F LGI +VG + A+ +A+ + +    A          +     L  +  +G  IA
Sbjct: 504 VELVLFGLGIDNVGGKAAQLIARKFKNMSKIA----------SASVQELTAIDTIGMTIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +++  ++Q       +  L +       +G   +   +  + K +V TG L    R +  
Sbjct: 554 ESLTTYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFT 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + +  LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T
Sbjct: 614 KKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669


>gi|227503896|ref|ZP_03933945.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940]
 gi|227199519|gb|EEI79567.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940]
          Length = 680

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/713 (29%), Positives = 345/713 (48%), Gaps = 49/713 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +++ S L QE+  H + YY   +P I D+++D L +R   +    P+LA    P+ P 
Sbjct: 12  DIQRKWSELAQEVRKHRELYYN-GEPSIPDADFDELFQRLLKLEAEHPELAV---PDSPT 67

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G         + H     SL+ ++N  +++ ++ R           +  +  E KID
Sbjct: 68  QQVGAAP-EGAADIEHLERLYSLDNVFNESEMQDWLDRT---------PAQTYLTELKID 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEV 191
           G  I + Y  GK   AA RGDG  GED++A  + I  IP  LS      +P ++EVRGEV
Sbjct: 118 GLSIDLVYRDGKLTTAATRGDGRVGEDITANAKVITDIPHELSGTDEYPVPALVEVRGEV 177

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+  ++F  +N      G+  +ANPRNAA+G LR  +P ++  R L+   HG+G      
Sbjct: 178 YMRPDEFAEINAARREDGKPTFANPRNAAAGGLRMKDPNEVKKRRLHMVCHGIGARDGFQ 237

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++  Q +   GFPV+   +Q  +   +          R    +++DGLV KVD+ +
Sbjct: 238 PSSQHDAYQALEAWGFPVSPYTKQVKSAAAVQKEIKHWAEHRHDAYFEMDGLVVKVDDLA 297

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  +R+PRW I++K+  ++ +T+LLDI++ +GRTG +TP A +EPV + G+ ++ 
Sbjct: 298 SQRALGATSRAPRWAIAYKYPPEEVTTKLLDIEVGVGRTGRITPFAVMEPVFVSGSTVSK 357

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+  +K            + + +GD +++++AGE+IP+V+  ++  R      + F
Sbjct: 358 ATLHNQFEVKN-----------KGVMIGDTIIIRKAGEIIPEVLGPVLELRDDSVYEWVF 406

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C +++               RC    +C AQ   RL++  SR   +IE LG++ 
Sbjct: 407 PENCPSCGTKL-----APQKDGDQDWRCPNTRSCPAQLSARLEYLASRKGMDIEALGEKA 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                +S      +   AD+F L   +   ++      G  +     L  ++   R    
Sbjct: 462 AVDLIES----GVLVDEADLFDLDEEKLLKSSAYTTKAGKLNAQGKKLLKNLESARQTDF 517

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + SL IRHVG   AR+LA  Y S +       + +A              VG IIA 
Sbjct: 518 WRVLVSLSIRHVGPIAARALATRYRSMEALRAASESELADT----------DGVGGIIAA 567

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +   +++   +   VE              +     +E   +V TGTL+   R  A+E +
Sbjct: 568 SFKAWFEEDWHRNIVEKWAAAGVTMEDTATEQHEQTLEGLTIVVTGTLENFSRDSAKEAI 627

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
              G   S  +S+KTD ++VG+N GSK  KA++LG+ I++E  F  LL+    
Sbjct: 628 ITRGGKASGSVSKKTDYVVVGENAGSKETKARELGLTILDEAGFQRLLETGEA 680


>gi|291542878|emb|CBL15988.1| DNA ligase, NAD-dependent [Ruminococcus bromii L2-63]
          Length = 661

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/703 (32%), Positives = 363/703 (51%), Gaps = 51/703 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A+     L +++ YH++ YY   +P I D +YD L R  + I   FP L   + P  P N
Sbjct: 6   AQNRAQELTKQLEYHNNLYYNQDEPEISDYDYDMLMRELENIEKEFPSL---KSPMSPTN 62

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG        VTH +   SL   ++ E+LR+F  R+          ++ + +EPK DG
Sbjct: 63  RVGGNAGEKFSPVTHEVVMESLHDSFSHEELREFDARVRETVP-----NVRYVVEPKFDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             ++  YE G FV  + RGDG  GEDV+  +  I ++P+ +  N PE +EVRGEVY+S N
Sbjct: 118 LSVSCEYENGVFVRGSTRGDGSVGEDVTENLMTIKSLPKRIP-NAPEYLEVRGEVYMSFN 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F AL         K + NPRNAA+G LR+ N      R L+ FV  + +   +  +   
Sbjct: 177 SFDALTRRQEENEEKTFKNPRNAAAGSLRQKNAKITAQRSLDIFVFNIQQIRGMTIESHI 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L  +  LGFP        +    ++     + ++R  L Y IDG V KVD F+ ++ L
Sbjct: 237 QGLDYLTELGFPT-AFYSVYDNVDEVIEEIERIGNMRGELDYAIDGAVVKVDSFASRRLL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+ P+W  ++K+  ++  T+LL+I+I +GRTG+LTPV   EPV + G  ++ ATLHN
Sbjct: 296 GSTAKYPKWAEAYKYPPEEKPTKLLNIEINVGRTGVLTPVGNFEPVLLAGTTVSRATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           +D+I             + I VGD V++++AGE+IP+V+ +   E   +A PF FPS CP
Sbjct: 356 KDFI-----------DEKGICVGDTVIIRKAGEIIPEVLSV--KEHAENAVPFEFPSVCP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + V  D         AA RCT    C AQ    L HFVSRDA +I+GLG   L+   
Sbjct: 403 SCGNPVTHDEGE------AAIRCTNT-DCPAQLTRHLIHFVSRDAMDIDGLGPAILEQLS 455

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   ++ PAD++ L+    +S  +        + S  NL  SI K +   L R +F
Sbjct: 456 DE----GLVKSPADLYRLKAEDISSLERKA------EKSAQNLISSIEKSKENELFRLVF 505

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR++G + A+ + + + +       I++I++   +D+    ++   G ++A+++  +
Sbjct: 506 ALGIRNIGLKAAKIICENFAT-------IDDIMSAKAEDFE---KIDGFGAVMAESLENY 555

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +        +  L            KN     E K  V TGTL  + R +A + + Q G 
Sbjct: 556 FSLDGTKELIADLKSLGLKMKPSQPKNTGGLFEGKTFVLTGTLPTMTRSEASKLIEQNGG 615

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             S+ +S+KT  ++ G++ GSKL KAQ LGV I++EE+   +L
Sbjct: 616 KTSSSVSKKTSYVLAGEDAGSKLTKAQTLGVTIISEEELKEML 658


>gi|149003762|ref|ZP_01828594.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69]
 gi|237650785|ref|ZP_04525037.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI 1974]
 gi|237822373|ref|ZP_04598218.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147758208|gb|EDK65210.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69]
          Length = 652

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 358/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + 
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKG 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|324993931|gb|EGC25850.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK405]
 gi|324994750|gb|EGC26663.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK678]
 gi|327463193|gb|EGF09514.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1]
          Length = 652

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/702 (32%), Positives = 361/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRIRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  I  +L+L  P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDI--LLTLKEPLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q  
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQVGSQEA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVDSKRVSEEH-LEIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYIAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSIGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E     V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|189485424|ref|YP_001956365.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|254781446|sp|B1H072|DNLJ_UNCTG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|170287383|dbj|BAG13904.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 674

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/716 (34%), Positives = 381/716 (53%), Gaps = 54/716 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +   +  +  L +E+  H+  YY+ + P I DSEYD L +  + I    P  A    P
Sbjct: 1   MIMGNIQNRIDYLRKELIRHNGLYYESNNPEISDSEYDNLAKELEQIEKENPLFAL---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  KI G ++ S  ++ HS P LSL+  ++ ++  K+  RI +    K+     FT+E
Sbjct: 58  DSPTKKISGFVSSSFEQIKHSSPMLSLDNTYSQKETAKWYERIEKNLNNKNT---EFTIE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190
           PKIDG   ++ Y  G     A RGDG +GED++  I+ +  IP  L   N P   E+RGE
Sbjct: 115 PKIDGVSASLTYINGSLTAGATRGDGETGEDITENIKKVKNIPYKLKADNPPYFFELRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           VYI K+DF  LN+E++    + +AN RNAASG LR+ NP     R L FFVH LGK    
Sbjct: 175 VYIDKSDFRKLNEEILMSVGQKFANSRNAASGSLRQKNPQITAERKLRFFVHSLGKIDGK 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q + LQ  R  GF + +  +  ++   I+ +   M + R  L Y+IDGLV KV+  
Sbjct: 235 QFESQSDFLQYCRKCGFQLQDNFKICHSLKEIMDFMEIMINNRDLLHYEIDGLVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQK+LG   +SPRW I+ KF  KQA+T+L  I +Q+GRTGI+TP A LE V + G  I+
Sbjct: 295 QLQKELGYTNKSPRWAIAFKFPAKQATTKLSRIRVQVGRTGIITPSAILESVTLAGVTIS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           +ATLHN + I+ L+           +  GD VL++RAG+VIPK+V ++  E   +   F 
Sbjct: 355 HATLHNFEEIERLN-----------VNEGDTVLIERAGDVIPKIVKVVKKE---NRGFFK 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S +V++   +      A+RC     C AQ    L HFVSR+A +I+G GK 
Sbjct: 401 PPHNCPSCNSGIVKENEEE-----VAYRCINP-ECPAQFRRHLIHFVSRNAMDIDGFGKA 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F   +     I++ ADI+ L+               F +   +NL  ++   +   
Sbjct: 455 VIDQFLDRKK----IQVLADIYYLKYDDFIKLDL------FKEKKTSNLMKAVAASKKHP 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L + +F+LGIR +G +++  +AK + S +          A  N       RVP +G I+A
Sbjct: 505 LSKLLFALGIRRIGEKVSEIIAKKFKSME----------ALFNASIEDFTRVPEIGSILA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++ EF++N      ++ L+      I    +   ++ + K  V TG L+   R +A + 
Sbjct: 555 LSLKEFFENKTVRNVIDNLIAAGVNMIEPEAEQSGTQFDGKMFVLTGELKNHTREQAGKI 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF------LFLLQ 719
           +  LG  V++ +S+KTD I+ G N GSKL+KA++L VKI++E +F      L L++
Sbjct: 615 IRSLGGKVASSVSKKTDYIVAGVNAGSKLKKAKELNVKIVDEAEFDILTGKLSLIE 670


>gi|149006206|ref|ZP_01829918.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74]
 gi|225856757|ref|YP_002738268.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae P1031]
 gi|307127352|ref|YP_003879383.1| NAD-dependent DNA ligase [Streptococcus pneumoniae 670-6B]
 gi|254781432|sp|C1CKI0|DNLJ_STRZP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147761983|gb|EDK68945.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74]
 gi|225725530|gb|ACO21382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae P1031]
 gi|306484414|gb|ADM91283.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 670-6B]
 gi|332075451|gb|EGI85920.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41301]
          Length = 652

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 357/701 (50%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + 
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKG 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +Y+ S +N  Q           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|115314545|ref|YP_763268.1| DNA ligase [Francisella tularensis subsp. holarctica OSU18]
 gi|122325430|sp|Q0BMQ3|DNLJ_FRATO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115129444|gb|ABI82631.1| DNA ligase (NAD(+)) [Francisella tularensis subsp. holarctica
           OSU18]
          Length = 678

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/713 (36%), Positives = 395/713 (55%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  + +G+G  S+ 
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 250 F--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F   + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKS-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQI 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S++    +       A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSKIENVNDQ------AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++    +      I+ PADI+ L   Q T   ++         S  N+ DSI K + 
Sbjct: 466 AKLIEQLVAAN----LIKYPADIYKLNFEQLTGLERMAA------KSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F              +  LI +  VG+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINYVGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           IA  IV F+ +  NI  VE  L       +  + E   +     K +V TG+ +   R +
Sbjct: 566 IANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|225858927|ref|YP_002740437.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae 70585]
 gi|254781425|sp|C1C7B1|DNLJ_STRP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225720821|gb|ACO16675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 70585]
          Length = 652

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 358/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L+  +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLTEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + 
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKG 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +Y+ S +N  Q           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|312880304|ref|ZP_07740104.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260]
 gi|310783595|gb|EFQ23993.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260]
          Length = 696

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/713 (33%), Positives = 361/713 (50%), Gaps = 47/713 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A   +  L ++I  HD  YY    P++ D  YDAL R   ++  A PDLA   DP+ P
Sbjct: 11  DAAASRIRELTEQIRLHDHRYYVLDDPVLPDDAYDALLRELRSLERAHPDLA---DPDSP 67

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG       KVTH +P  SL+   + E+L  F+ R+ +   +     +    EPKI
Sbjct: 68  TGRVGGSPKEEFRKVTHPVPLQSLDNALDREELAAFLQRLRQGLGR---EEVPVVCEPKI 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+RY  G+FV  A RGDG  GEDV+  +R + ++P  L+L +P  +EVRGEV+++
Sbjct: 125 DGLAVTLRYRDGRFVQGATRGDGRVGEDVTENLRTLRSLPLRLALPVPGELEVRGEVFMA 184

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           + DF  LN      G  P+ANPRNAA+G LR+L+P     R L  F++ +          
Sbjct: 185 RGDFGELNVRREEEGEPPFANPRNAAAGALRQLDPRITAQRRLRLFLYHVVDPLARGITT 244

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q  +L+ +R +GFP      +  +   I ++ +     R       DG+V K+D+ + ++
Sbjct: 245 QGALLEWLREVGFPTQGEWARCTSPGEIGTFLDRWDQKRHEHLAQTDGVVVKLDDLAARE 304

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   R+PRW I+ K+  ++  TR+ DI+I +GRTG+LTP A LEPV + G ++  A+L
Sbjct: 305 TLGSTNRAPRWAIAFKYPPEERPTRVRDIEISVGRTGVLTPTAVLEPVRLSGTVVQRASL 364

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D +             +D+R+GDRV V++AGE+IP+VV +    R     PF  PS 
Sbjct: 365 HNPDEVAR-----------KDVRIGDRVFVRKAGEIIPEVVRVDREARDGSESPFVPPSA 413

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S  VR           A RC    +C AQ  E L+HF SR   +I GLG++ L+ 
Sbjct: 414 CPACGSEAVRLEGE------VALRCPN-RSCPAQLKEGLRHFASRGGLDIRGLGEKLLEQ 466

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     +R  AD+F +      +  ++         S  NL +++   ++  L + 
Sbjct: 467 AVD----VGLVRDAADLFLVTEDAWAALDRMGA------ASARNLKEALEVAKDRPLRKL 516

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR+VG  +A  LA  + S +         +A           V  VG ++A A+ 
Sbjct: 517 LFALGIRNVGDRLAADLAGRFGSLEALEACSEEALAA----------VEGVGPVVAAAVR 566

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+++  N   +  L +         E+           KLVFTG L+   R  AQE   
Sbjct: 567 AFFRDGHNRETLRRLREAGVRMEDPQEEKAPGGLPWAGWKLVFTGELESCPREAAQEAAR 626

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             GA     +SRKT  ++ G   GSKLEKA++LG+ + +E +FL LL++   T
Sbjct: 627 ARGAQTGESVSRKTTAVVAGARAGSKLEKARKLGIPVWDEARFLELLREAEET 679


>gi|114776845|ref|ZP_01451888.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1]
 gi|114552931|gb|EAU55362.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1]
          Length = 670

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/708 (34%), Positives = 379/708 (53%), Gaps = 51/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
             +  L  ++  H+  YY    P+I D+EYD L R  +++     +   +   + P   +
Sbjct: 9   ARIEHLRSQLREHNYRYYILDAPVISDAEYDRLLRELESLEAELGEPVPA---DSPTRTV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G   +      TH    LSL   ++  ++  F+ RI          ++ F +EPK+DG  
Sbjct: 66  GAPPSQVFTTRTHGEALLSLANAFSAGEVEAFVRRIGETLPAT---TLSFIVEPKVDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYIS 194
           + +RYE+G    AA RGDG +GEDV+  +R I  IP  L     + +P ++EVRGE+Y+S
Sbjct: 123 VNLRYEQGSLTIAATRGDGTTGEDVTDNVRTIGDIPWQLKQVDGIELPTVLEVRGEIYMS 182

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           +  F ALN    A G +P+ANPRNAA+G LR+L+     +R L FF +G G      A  
Sbjct: 183 REAFAALNARQDAEGAQPFANPRNAAAGSLRQLDARVTASRRLGFFAYGAGLGGRAIASS 242

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q ++L+++   GF V      A+   G+++ Y +++  R  +PY+IDG+VYK+DEF+LQ 
Sbjct: 243 QSQLLERLAGFGFAV-QKTACADDLEGLLATYQQLQQQRPDMPYEIDGVVYKLDEFALQD 301

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G  ARSPRW I+HKF  ++ +T + DI  Q+GRTG++TPVA +EPV +GG +++ ATL
Sbjct: 302 RMGAVARSPRWAIAHKFPAEEVTTTVKDIIWQVGRTGVITPVADMEPVAVGGVVVSRATL 361

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D +K            + +  G RV+V+RAG+VIP+VV  +       A     P+ 
Sbjct: 362 HNIDELKR-----------KQVYAGARVIVRRAGDVIPEVVRAVDV--DAQAMMPKAPAQ 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C + + R           A RC+GGL+CSAQ  ERL+HFVSR A +IEG+G + +  
Sbjct: 409 CPVCGASLFRLEGE------VAIRCSGGLSCSAQLTERLRHFVSRGAMDIEGMGDKLIAR 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     +   AD++                 G G+  +TNL  SI + +   L RF
Sbjct: 463 LVDEGC----LNDIADLYEFDYASL------HEWQGMGEKKITNLQLSIERSKQRPLARF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +LGIRHVG+  A +LA ++   +   Q           D  +L+ VP VG  +A +I+
Sbjct: 513 LHALGIRHVGSATAAALATHFADLELLMQA----------DEEALLAVPDVGPEVAGSIL 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F++   N   ++ LL          ++     +  K +V TG+   I+R  AQE +  L
Sbjct: 563 SFFREQHNRDVIDRLLAAGVTPEAPQQQQHDHPLAGKTVVLTGSFVAIKRRTAQEQLRAL 622

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G   S  +S++TD++I G+  GSKL KA++LG+++ +E Q L  L  +
Sbjct: 623 GVRPSGSVSKQTDLVIAGEKAGSKLTKARELGIEVADEAQLLSWLNWH 670


>gi|149024919|ref|ZP_01836320.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72]
 gi|303259779|ref|ZP_07345754.1| DNA ligase [Streptococcus pneumoniae SP-BS293]
 gi|303262954|ref|ZP_07348889.1| DNA ligase [Streptococcus pneumoniae SP14-BS292]
 gi|303264916|ref|ZP_07350832.1| DNA ligase [Streptococcus pneumoniae BS397]
 gi|303266897|ref|ZP_07352775.1| DNA ligase [Streptococcus pneumoniae BS457]
 gi|303268933|ref|ZP_07354718.1| DNA ligase [Streptococcus pneumoniae BS458]
 gi|147929542|gb|EDK80536.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72]
 gi|301794230|emb|CBW36650.1| DNA ligase [Streptococcus pneumoniae INV104]
 gi|302635931|gb|EFL66431.1| DNA ligase [Streptococcus pneumoniae SP14-BS292]
 gi|302638984|gb|EFL69444.1| DNA ligase [Streptococcus pneumoniae SP-BS293]
 gi|302641551|gb|EFL71913.1| DNA ligase [Streptococcus pneumoniae BS458]
 gi|302643595|gb|EFL73864.1| DNA ligase [Streptococcus pneumoniae BS457]
 gi|302645604|gb|EFL75835.1| DNA ligase [Streptococcus pneumoniae BS397]
 gi|332202976|gb|EGJ17044.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47901]
          Length = 652

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 358/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + 
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKG 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|328956034|ref|YP_004373367.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2]
 gi|328456358|gb|AEB07552.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2]
          Length = 752

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/764 (32%), Positives = 373/764 (48%), Gaps = 79/764 (10%)

Query: 2   KKRQLIPIEALSIEQA---RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           K     P   ++   A    +    L + + YH   YY    P I D+++D L R    I
Sbjct: 26  KDSTAQPAGHMTSTAAVPPAERAEELRRLLDYHAYRYYALDAPEISDAQFDRLLRELQQI 85

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
               PDL     P+    ++GG ++     +TH     S++   ++++L  ++ R+    
Sbjct: 86  EVEHPDLI---TPDSYTQRVGGFVSGQFAPITHMARMYSIDDAMDLDELDAWLDRVESAL 142

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL- 177
                 S  +T E KIDG  + + Y  GKFV AA RGDG+ GEDVS  IR I  +P  L 
Sbjct: 143 GA---GSAVYTCELKIDGLGVALTYRSGKFVRAATRGDGYVGEDVSRNIRTIADVPMRLS 199

Query: 178 -------SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
                    +  E IEVRGEVY+ K  F  LN    A GR P+ANPRNAA+G LR+ +P 
Sbjct: 200 TEAVERMGDDASEAIEVRGEVYMPKGSFARLNATADAEGRPPFANPRNAAAGSLRQKDPA 259

Query: 231 DITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
              R  L+ F++ L  T+ +    Q E L  +R  GF VN  V +  +   +  +  +  
Sbjct: 260 VTARRDLSTFMYALADTAPVHVTSQLEFLDWLREAGFHVNPNVARCASPAQVHDFCADAL 319

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
           + R  L YDIDG+V KVD F LQ++LG  AR+PRW I+ KF  ++  T L +I IQ+GRT
Sbjct: 320 AHRGGLDYDIDGVVVKVDSFELQERLGFTARAPRWAIAFKFPPEERRTVLREIRIQVGRT 379

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G+LTPVA+ +PV++ G+ I  ATLHN D I+            +D+RVGD ++V +AG+V
Sbjct: 380 GVLTPVAQFDPVSVAGSTIARATLHNIDEIER-----------KDVRVGDTIIVHKAGDV 428

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IP+VV  +++ R   A+P+  P  CP C + VVR+          A RC   L C AQ  
Sbjct: 429 IPEVVGPVLDLRADGARPYQMPDRCPACGNPVVREPGQ------VAIRCV-SLDCPAQLH 481

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT------- 522
           ERL H+VSR   +++G+G + +D        A  +R  AD +TL   Q  +         
Sbjct: 482 ERLLHWVSRGCMDVDGVGAELVDKLVD----AGLVRDVADFYTLTSEQIAALDTGRVYQK 537

Query: 523 -------KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
                  +  + +  G      + D +++ ++  L R +F+LGIRHVG  +   LA+++ 
Sbjct: 538 TVAKKGVRAGDPILVGKTVADKIADELDRSKSRPLGRVLFALGIRHVGKSVGELLARHFG 597

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL------ 629
           S +   +     IA           +  +G  IA +   F+  P N+  +  L       
Sbjct: 598 SIEALIEANEEEIAG----------IDGIGPKIASSTKMFFSVPENLQVLSRLREAGVGT 647

Query: 630 KEVSPSIGRHEKNVSS---------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           +E S  +   E   S           +E    V TG+L+   R +A   +  LGA V+  
Sbjct: 648 QEGSGEVEAREAEESGVSVELARQRPLEGLTFVLTGSLEHRTRDQAAAALVALGARVAGS 707

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +S++T  +I G   GSKL KA  LG+ +++E +   +L     +
Sbjct: 708 VSKRTSFVIAGPGAGSKLTKAASLGIAVLDERELERILATGRVS 751


>gi|309782142|ref|ZP_07676872.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA]
 gi|308919208|gb|EFP64875.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA]
          Length = 813

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/834 (30%), Positives = 397/834 (47%), Gaps = 144/834 (17%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
            +   P    + E      + L  E++ +   YY   +P + D+EYD L R  +A+    
Sbjct: 2   SKIAEPASGTTPE---ARAAWLRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEH 58

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQK 120
           P+L   + P+ P  ++GG +      V H IP LS+    +      R F   + R    
Sbjct: 59  PEL---KTPDSPTLRVGGAVLPEFAAVRHVIPMLSIRTETDTTPNGARAFDASVRRELGL 115

Query: 121 KD-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS- 178
            D D  + +  E K DG  I +RYE+G  V AA RGDG +GEDV+  IR I  IP  LS 
Sbjct: 116 DDTDPPVEYAAELKFDGLAIGLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSP 175

Query: 179 --LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
              ++P+++EVRGEVY+ ++DF  LN      G K + NPRN A+G +R+L+P     R 
Sbjct: 176 VDGHVPDVLEVRGEVYMRRDDFEKLNVRQRERGDKTFVNPRNTAAGAVRQLDPKMAAERP 235

Query: 236 LNFFVHGLGKTSEI--FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           L+FF +GLG+             ML  ++  GFPV+          G+V +++ + + R 
Sbjct: 236 LSFFAYGLGEVVGWKGMPGTHSGMLDALQAFGFPVSAERAAVKGGDGLVEFHDAIGAKRD 295

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
           +LP+DIDG+VYKV+  +LQ++LG R+R PRW ++HK+  ++A T +  ID+Q+GRTG +T
Sbjct: 296 SLPFDIDGVVYKVNSLALQRELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAIT 355

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVARL PV +GG  +TNATLHNED ++            +D+RVGD V+V+RAG+VIP+V
Sbjct: 356 PVARLVPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVVVRRAGDVIPEV 404

Query: 414 VDIIVNERH---------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           V ++++ R                P   PF  P  CP+C S VVR+         A  RC
Sbjct: 405 VSVVLDRRPLDDVPGSDLFNPRQQPKYPPFELPKTCPVCGSHVVREEGE------AVARC 458

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ-RRQ 517
           +GGL CSAQ+ E ++HF  R   +IEGLG++ +D   + +     +   AD++ L     
Sbjct: 459 SGGLFCSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELD----YVHGIADLYKLTLEDF 514

Query: 518 QTSTTKIENILGFGD----------VSVTNLYDSINKRRNISLERFIFSLGIRHV----- 562
                + +   G                 NL + I   +   L RF+F+LGIRHV     
Sbjct: 515 LEMKRRADERDGVKPETVSAGKIATKWAENLLEGIQASKTPPLARFLFALGIRHVGESTA 574

Query: 563 ---------------------------GAEIARSLAKYYLSYQNFAQEINNIIAH----- 590
                                      GA +A ++A ++   +N  Q ++ ++       
Sbjct: 575 KTLADWLGSLAMIRRAPAPLLLALPDVGATVAEAIADFFAEPKN-QQALDALLEAGVAPQ 633

Query: 591 -------------NNDDWLSLIRVPLVGDIIAQ--------------------------- 610
                           +  + + VP +    A+                           
Sbjct: 634 GEHAPNAKLREKLEPAELYATLGVPKLTATRAKQLAVAAPTLAQLASVEPDQLAGLPADV 693

Query: 611 --AIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             +++E+  +  +   +  L        +    E      +  K +V TGTL  + R +A
Sbjct: 694 TASLLEWLASHDHRAQLAKLDALRGELLAAMPAEAAEEGVLAGKTVVLTGTLPNLTRDEA 753

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +   GA VS  +S+KTD ++ G++ GSKL KA++L VK+++E   L LL++
Sbjct: 754 KAMLEAAGAKVSGSVSKKTDYVVAGEDAGSKLAKAEELNVKVLDEAGMLALLKK 807


>gi|148998387|ref|ZP_01825829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70]
 gi|168576158|ref|ZP_02722052.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016]
 gi|194398076|ref|YP_002037745.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae G54]
 gi|225861080|ref|YP_002742589.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230922|ref|ZP_06964603.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254162|ref|ZP_06977748.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502866|ref|YP_003724806.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A]
 gi|254781424|sp|B5E4M9|DNLJ_STRP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781433|sp|C1CRL7|DNLJ_STRZT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147755784|gb|EDK62829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70]
 gi|183577935|gb|EDT98463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016]
 gi|194357743|gb|ACF56191.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae G54]
 gi|225727034|gb|ACO22885.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238461|gb|ADI69592.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A]
 gi|327389325|gb|EGE87670.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA04375]
 gi|332075071|gb|EGI85542.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17545]
          Length = 652

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 357/701 (50%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + 
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKG 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +Y+ S +N  Q           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|72383117|ref|YP_292472.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A]
 gi|123746237|sp|Q46IA9|DNLJ_PROMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|72002967|gb|AAZ58769.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A]
          Length = 690

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/719 (30%), Positives = 355/719 (49%), Gaps = 57/719 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L   ++  +  YY    P I DS YD L R    I +  P L      + P  ++
Sbjct: 10  ERIKELRALLNKANYSYYVLDSPEIDDSVYDQLYRELIEIENIHPSLITD---DSPSQRL 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEPK 133
           GG  +     V H+IP LSL+  +N+ ++  +  RI +    ++ N           E K
Sbjct: 67  GGVPSKGFKNVEHNIPLLSLDNAFNLNEVEAWYGRISKLISSENKNIKKVYDPELICELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           IDG  I++RYE G    A  RGDG +GED++  IR I TIP  L L N P  +E+RGE +
Sbjct: 127 IDGNAISLRYENGILTRATTRGDGKTGEDITTNIRTISTIPLRLLLENPPLWVEIRGEAF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +  N F  LN E     +  +ANPRN+ +G LR+L+P  +  R L+FF + L        
Sbjct: 187 MPNNIFNKLNIERKNNDQPLFANPRNSCAGTLRQLDPKIVASRKLDFFAYSLYFPENWEP 246

Query: 252 K--------GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     Q E L+ ++ +GF VN       T +    YY   +  +  L Y  DG+V
Sbjct: 247 TDNNFKKPISQSESLEFLKNIGFKVNTTYETTKTLNEANKYYKYWEVKKDFLAYATDGIV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+D+F +Q  LG   ++PRW I+ K+  ++ +T+L  I  Q+GR+G +TPVA  E + +
Sbjct: 307 VKIDKFEIQNLLGATNKAPRWAIAVKYPAEEKATKLRKIIFQVGRSGAVTPVAEFESIEL 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  ATLHN   +  L           D+   D ++V++AGE+IP+V+ +I   R  
Sbjct: 367 AGTSVNRATLHNAKRLASL-----------DLHYEDTIIVRKAGEIIPEVIRVIKEFRKV 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+    P  CP C S+++ + N       A  +C     C+A+    L+H+VS+ + NI
Sbjct: 416 DAKLVQLPQNCPECNSKLILESNE------AITKCIN-YRCAAKLKGLLRHWVSKGSMNI 468

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG++ ++           ++  AD++ L+        +      FG+ S  NL   IN
Sbjct: 469 DGLGEKIINQLVNE----GYVKSIADLYKLEIDSLLELER------FGEKSANNLLIEIN 518

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + +N +  + ++ LGI H+G   A+SL+  + S       I  + A   +    +  +  
Sbjct: 519 ESKNKNWHKQLYGLGIPHIGEANAKSLSNNFNS-------IEELNAIAKESPEKISNIYG 571

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            G+ +  AIV+++ +  N   ++ L              +  N S+  + K  V TGTL 
Sbjct: 572 FGNEMKDAIVKWFDDSNNQTLIKELKAIGFSLKESLDSNYNSNQSNVFDGKSFVLTGTLD 631

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + R +A+E +   G  VS+ +S+KTD ++ G+  GSKL KAQ+LGVKI+NE +   LL
Sbjct: 632 SLTRDEAKELIESAGGKVSSSISKKTDFLVSGEKAGSKLNKAQELGVKIINENELKLLL 690


>gi|227832930|ref|YP_002834637.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182581|ref|ZP_06042002.1| NAD-dependent DNA ligase LigA [Corynebacterium aurimucosum ATCC
           700975]
 gi|254781299|sp|C3PFU5|DNLJ_CORA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|227453946|gb|ACP32699.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975]
          Length = 674

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 209/713 (29%), Positives = 358/713 (50%), Gaps = 49/713 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++E S L QE+  H + YY   +P I D+++D L +R  A+    P+L   + P+ P 
Sbjct: 6   DIQREWSELAQEVRKHRELYYN-GEPSIPDADFDELFQRLLALEAEHPEL---QTPDSPT 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G         + H     SL+ +++ E+L+ ++ R           +  +  E KID
Sbjct: 62  QQVGAAP-EGAVDIEHLERLYSLDNVFSAEELQDWLDRT---------PAEAYLTELKID 111

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEV 191
           G  I + Y  GK V AA RGDG  GED++A  R IP IP  L+      +P ++EVRGEV
Sbjct: 112 GLSIDLVYRDGKLVTAATRGDGRVGEDITANARVIPDIPHELTGTDEYPVPSLVEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+  ++F  +N      G+  +ANPRNAA+G LR  +P D+  R L+   HG+G      
Sbjct: 172 YMRPDEFEEINAARREDGKPTFANPRNAAAGGLRMKDPEDVKKRRLHMVCHGIGARERFQ 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++  + +   GFPV+   ++  T   +       +  R    +++DGLV KVD+ +
Sbjct: 232 PTSQHDAYKALEAWGFPVSPYTQRVTTAKEVQERVTYWEEHRHDAYFEMDGLVIKVDDLA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  +R+PRW I++K+  ++ +T+LL+I++ +GRTG +TP A +EPV + G+ ++ 
Sbjct: 292 SQRALGATSRAPRWAIAYKYPPEEVTTKLLNIEVGVGRTGRVTPFAIMEPVFVSGSTVSM 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+  +K            +++ +GD +++++AGE+IP+V+  ++++R      + F
Sbjct: 352 ATLHNQFEVKN-----------KNVLIGDTIIIRKAGEIIPEVLGPVLDKRDGSETEWVF 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C +++         +     RC    +C AQ   RL++  SR A +I  LG++ 
Sbjct: 401 PENCPACGTKL-----APQKEGDQDWRCPNTRSCPAQLAARLEYLASRKALDIGELGEKA 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 S      +   AD+F L  +    ++      G  + S   L +++   R    
Sbjct: 456 AADLISS----GVLEDEADLFDLDEQALLKSSVYTTQKGALNASGKKLLENLKTARQAEF 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   AR+LA  + S +         +A              VG IIA+
Sbjct: 512 WRVLVALSIRHVGPIAARALATRFGSMEVLRAASVEELADT----------DGVGTIIAE 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +  ++++   +   V+                 +  +E   +V TGTL+   R  A+E +
Sbjct: 562 SFKQWFEVDWHDNIVQKWTAAGVTMEEESSDKPAQTLEGITVVVTGTLENFTRDSAKEAI 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
              G   S+ +S+KT+ ++VG+N GSK +KA+ LG+ I++EE F  LL+    
Sbjct: 622 ITRGGKASSSVSKKTNYVVVGENAGSKEQKARDLGLTILDEEGFTRLLETGEA 674


>gi|328946560|gb|EGG40699.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1087]
          Length = 652

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/702 (32%), Positives = 360/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +   +    P+ P ++
Sbjct: 2   KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKY---STDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRIRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L    P  I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKE--PLDITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q  
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPTQVGSQEA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  L F VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG
Sbjct: 230 VLNKLADLDFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +P   PS CP 
Sbjct: 350 DYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVS-EEPLEIPSHCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  A I+ L             +  F + S   LY +I   +  S ER +F 
Sbjct: 451 QN----LVKDVAGIYRLTVENLL------ELENFKEKSANKLYTAIQASKENSAERLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +      +Q     IA           +  +G +IAQ++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q    I   E   + V+      +    + +    +V TG LQK+ R++A+E +  LGA
Sbjct: 551 EQEGSQILLAELQEEGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 611 NVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|15903068|ref|NP_358618.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae R6]
 gi|116516470|ref|YP_816476.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae D39]
 gi|81449679|sp|Q8DPS9|DNLJ_STRR6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|122278638|sp|Q04KH2|DNLJ_STRP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15458641|gb|AAK99828.1| DNA ligase [Streptococcus pneumoniae R6]
 gi|116077046|gb|ABJ54766.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae D39]
          Length = 652

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/701 (30%), Positives = 357/701 (50%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + 
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKG 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY- 616
           GIRHVG++ ++ L +Y+ S +N  Q           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFA 551

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                I   E     V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 AEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|303254175|ref|ZP_07340287.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455]
 gi|302598846|gb|EFL65880.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455]
          Length = 652

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/701 (30%), Positives = 357/701 (50%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDCLYRELVELETAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  +    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILLAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I  +  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKHLEQLGFVVNPKRILAENIDEIWDFIQEVGEERDNLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R    +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKR-ISEEKLDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F  
Sbjct: 399 DSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  ++  ADI+ L+              G  + S + LY +I   +  S E+ +F L
Sbjct: 450 --AADLVKDVADIYRLKEEDFLLLE------GVKEKSASKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|254390812|ref|ZP_05006024.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
 gi|197704511|gb|EDY50323.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 730

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/742 (31%), Positives = 358/742 (48%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR+  + L ++I  H   YY   +P+I DSE+D L R  + +    P L     P+ 
Sbjct: 10  PARARERHAELAEQIEEHRFRYYVKDQPVISDSEFDRLLRSLEELEERHPALC---TPDS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G+    L KV H    LSL+  ++ E+L  +  R+ R     D +   F  E K
Sbjct: 67  PTQKVAGQYETDLAKVEHRERMLSLDNAFDEEELTAWAERVEREVGSPDFH---FLCELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YEKG+   AA RGDG  GED++  IR I  +P  L  + IPE++E+RGEVY
Sbjct: 124 VDGLAVNLTYEKGRLTRAATRGDGRIGEDITPNIRTIADVPDRLRGDRIPELVEIRGEVY 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
              + F  LN+  IA G +PYANPRN+ASG LR+ +P    T  L+  VHG+G       
Sbjct: 184 FPMDQFQQLNERRIAAGEQPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAREGFDI 243

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                    +R  G P     R  ++  G+  +       R ++ ++IDG+V K+DE  L
Sbjct: 244 DCLSHAYDLLREWGLPTARHNRVVDSLEGVREFIAHYGENRHSMEHEIDGVVVKLDEIPL 303

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  AR+PRW I+ K+  ++ +TRL+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 304 QGRLGSTARAPRWAIAWKYPPEEVNTRLVDILVGVGRTGRVTPYAQVEPVQVAGSEVEFA 363

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D +K            + + +GD V++++AG+VIP+++  +V  R    + F  P
Sbjct: 364 TLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRDGTEREFVMP 412

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC    +C AQ  ERL +   R + +IE  G    
Sbjct: 413 AECPECGTEL-----RPMKEGDVDLRCPNARSCPAQLRERLFYLAGRRSLDIEHFGYVAA 467

Query: 492 DFFFKSEDPAF-SIRIPADIFTLQRRQQ--------------------TSTTK----IEN 526
               +  +PA   ++   D+F+L   Q                     T   K      N
Sbjct: 468 AALTRPLEPAEPPLKDEGDLFSLTVEQLLPIRAYVLDPDSKLPKRDPKTGEEKIATVFAN 527

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   +  +I   +   L R +  L IRHVG   A +LA+ + S Q   +    
Sbjct: 528 QEGEPRKNALAMLRNIEAAKTRPLARVLTGLSIRHVGPVAAEALAREFRSVQRIQEATEE 587

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVS 644
            +A              VG IIA ++ +++    +   +                E+   
Sbjct: 588 ELAAT----------EGVGAIIAASLKQWFAEEWHQEILRKWEAAGVRMAEEGADEEQGP 637

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTLQ   R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 638 RPLEGVTVVVTGTLQDYTRDGAKEALQSLGAKVTGSVSKKTAFVVVGDNPGSKFDKAMQL 697

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
            V ++ E+ F  LL+Q     R
Sbjct: 698 KVPVLREDGFTLLLEQGPDAAR 719


>gi|294661389|ref|YP_003573265.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|254781251|sp|C3L496|DNLJ_AMOA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|227336540|gb|ACP21137.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 671

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/714 (31%), Positives = 373/714 (52%), Gaps = 50/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQARKE+  L   ++YH+  YY+ ++P I D E+D L  +  A+ + FPDL     P
Sbjct: 1   MDKEQARKEIKRLTALVAYHNKLYYEEAQPEISDYEFDQLLEKLIALENQFPDLRL---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GGE +     V H  P LSL   ++ E++ +F+ R ++        +I F  E
Sbjct: 58  NSPTQRVGGEPSKKFATVYHQYPMLSLSNTYSAEEVMQFVKRAHKQLP---GATIEFFCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
            K DG  I++ Y++GK      RGDG  G+D++   + IP IP+++   ++P   EVRGE
Sbjct: 115 LKFDGVAISLLYKEGKLDKVVTRGDGFKGDDITENAKQIPNIPQIIEHKDLPPAFEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
            ++S  DF  LN + +A G +P ANPRNA +G L+ L  T   R+L+ +++ L  T    
Sbjct: 175 AFMSLADFEKLNRDRLAHGLEPLANPRNATAGTLKTLKSTGPKRWLDCYMYSLLSTDMDL 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  +Q +    F V+   ++  T   +++Y    +S +++LP  IDG+V KV++  
Sbjct: 235 P-THEVCIQWLEKWCFHVSPTYKKCRTLEEVMAYIEYWESAKNSLPVAIDGVVIKVNDTL 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I++K+  +  +T L  +D Q+GRTG++TPVA L+P+ + G ++  
Sbjct: 294 QQNKLGLTAKSPRWAIAYKYKPENLATILESVDYQVGRTGVITPVAHLKPILLAGTIVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   I+ L           D+ +GD V +++ GE+IPK+    V++R  D++P  F
Sbjct: 354 ATLHNAGEIQRL-----------DLHLGDTVFIEKGGEIIPKITGTDVSKRSLDSEPVKF 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C + +V+          A + C     C  Q    LKHFV R A +I  +GKQ 
Sbjct: 403 VTHCPACGTELVKRYEK------ALYYCPNTKGCPYQLQGLLKHFVHRKAMDIRSIGKQT 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           +  PAD+++L+ +   S        GF D++  N+   I   +    
Sbjct: 457 IEMLINR----GLVHTPADLYSLKYQDIRSLE------GFKDLATRNVLSGIESSKQRPF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F+LGIRHVG  IA  + +YY                +N     LI +P +G  IA 
Sbjct: 507 ERVLFALGIRHVGEVIADKITQYYTDIDTL----------SNATVEDLIAIPFIGTEIAH 556

Query: 611 AIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++  +++NP N+  ++ L +       P +       S  +  K  V +GT Q  +R + 
Sbjct: 557 SVTNYFENPENLALIDVLKQAGLQLSRPQLATVFATQSLPLSGKTFVISGTFQNFEREEL 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQ 719
           +E + + G  +   +S K + +I+G+NPG  K+ +AQ LG+  +NE + L +L+
Sbjct: 617 KELIKKKGGGILTNISAKLNYLIIGENPGPGKVAQAQALGISTINETEILQMLE 670


>gi|148994566|ref|ZP_01823725.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68]
 gi|168488962|ref|ZP_02713161.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195]
 gi|147927160|gb|EDK78197.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68]
 gi|183572496|gb|EDT93024.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195]
 gi|332073479|gb|EGI83958.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17570]
          Length = 652

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 358/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + 
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVVAKRSLATFLY--QEASPSTRDSQEKG 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|289168011|ref|YP_003446280.1| DNA ligase [Streptococcus mitis B6]
 gi|288907578|emb|CBJ22415.1| DNA ligase [Streptococcus mitis B6]
          Length = 652

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/701 (30%), Positives = 359/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRK-----EVTHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP +L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLILPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN           I  +  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKHLEQLGFVVNPKRILTENIDEIWDFIQEIGQKRENLPYDIDGVVIKVNDLAGQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 DSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSVVEKLFSA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A+I+ LQ              G  + S + LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVANIYRLQEEDFLLLE------GVKEKSASKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|241668131|ref|ZP_04755709.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876666|ref|ZP_05249376.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842687|gb|EET21101.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 678

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/718 (36%), Positives = 399/718 (55%), Gaps = 54/718 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
              + L+  Q +  +  L + +      Y+   KP+I DS+YD L R    +    P L 
Sbjct: 9   TDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDLVDDNPQLK 68

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
            S   N  L+++GG++      + H     SL  ++++E+LR F  +I           I
Sbjct: 69  PS---NSVLDRVGGDVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDI 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEII 185
               EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L + N PE +
Sbjct: 118 ELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEEL 177

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  + +G+G
Sbjct: 178 EVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIG 237

Query: 245 KTSEIF--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
             S+ F   + Q+E++  ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGL
Sbjct: 238 YFSKDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGL 297

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KV+   LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV 
Sbjct: 298 VFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVA 357

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG +++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R 
Sbjct: 358 VGGVIVSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLSEYRK 406

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           PDAQ    P+ CP+C S +    +       A +RCTGG  C AQ  ERLKHFVSR A +
Sbjct: 407 PDAQMVEMPTNCPVCDSTIENINDQ------AIYRCTGGWHCQAQTTERLKHFVSRKAMD 460

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+ LG + ++        A  I+ PADI+ L   Q T   ++         S  N+ DSI
Sbjct: 461 IDKLGAKLIEQLV----AADLIKYPADIYKLNFEQLTGLERMGA------KSSQNVLDSI 510

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +  SL RFIF++GI+ VG   + +LA ++ S ++F +            +  LI + 
Sbjct: 511 TKSKEPSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------KFEQLIEIN 560

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
            +G+IIA+ IV F+Q+  NI  V+          +  + E+  +    NK +V TGT + 
Sbjct: 561 DIGEIIAKNIVSFWQDSLNIQIVDELLGNSINIQNPEKIEQAHNESFTNKTIVITGTFEN 620

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ LGV+++ EE    LL
Sbjct: 621 YNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLIKAQDLGVEVIFEEDLQNLL 678


>gi|302336117|ref|YP_003801324.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084]
 gi|301319957|gb|ADK68444.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084]
          Length = 747

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/727 (31%), Positives = 347/727 (47%), Gaps = 57/727 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L + +S     YY    P + D+E+D L     A+  A P+L     P     +I
Sbjct: 46  ARAAELNRILSRAAYAYYALDDPEMTDAEFDRLLVELQALESAHPELV---SPESYTQRI 102

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG ++     V H+    S++   ++++L +++ R         +  + +T E KIDG  
Sbjct: 103 GGYVSDQFEPVRHAQRMYSIDDAMSLDELDEWLARTDGALGATAERPVAYTCELKIDGLG 162

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---------SLNIPEIIEVRG 189
           I + Y  G  V AA RGDG +GE+V+A    I  IPR L                IEVRG
Sbjct: 163 IALTYRDGTLVRAATRGDGTTGENVTANALTIKDIPRALASAGMGRIAGGGFGVSIEVRG 222

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           EVY+ K+ F+ LN++  A GR+P+ANPRNAA+G LR+ + +    R L  F++ +   S 
Sbjct: 223 EVYMPKHSFVRLNEQNDAAGRQPFANPRNAAAGSLRQKDSSVTKARDLETFIYAVADESP 282

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +    Q++ L  ++  GF VN   R+  +   +  +  +  + R  L YDIDG+V KVD 
Sbjct: 283 LAIDTQHDFLSWLKDCGFSVNPHARRVESSREVRRFCVDALAYRGELDYDIDGVVVKVDS 342

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+ Q  LG  AR+PRW ++ KF  ++  T L  I +Q+GRTG+LTPVA  +PV + G+ I
Sbjct: 343 FAGQAALGFTARAPRWSMAFKFPPEERRTVLRQIRVQVGRTGVLTPVAEFDPVVVAGSTI 402

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP- 427
             ATLHN D ++            +D+R GD ++V +AG+VIP+VV  +           
Sbjct: 403 ARATLHNIDEVRR-----------KDVREGDTIVVHKAGDVIPEVVGPVTEGPLAAEHEA 451

Query: 428 ---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              +  P  CP C S VVR+          A RC   + C AQ  ERL H+ SR+A +I+
Sbjct: 452 RPLWDMPETCPSCGSPVVREEGE------VAWRCV-SIDCPAQASERLIHWGSRNAMDID 504

Query: 485 GLGKQQ----LDFFFKSEDPAFSIRIPAD---IFTLQRRQQTSTTKIENILG--FGDVSV 535
           GLG +     ++    ++   +  R+  D        R  +T+    E   G   G    
Sbjct: 505 GLGDEIVGRMVEQGILTDVADYYDRLDVDTLAAVDTGRVYETAGKGHEEGDGIVVGPTIA 564

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
             +   +   +   L R +F LGIRHVGA +A  LA  + S Q  A      +A      
Sbjct: 565 GKIMGQVEASKRAGLGRVLFGLGIRHVGASVANLLADRFGSMQALAAATEEDMA------ 618

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKL 652
               +V  +G  IAQ++  F+    N+  VE L                     ++    
Sbjct: 619 ----QVDGIGPKIAQSVRGFFSVEGNVAVVERLRAAGVSLEQEGFGEGPKRPQTLDGLTF 674

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL+K  R  A   +  LGA VS  +S+KT  ++ G   GSKL KAQ LGV +++E 
Sbjct: 675 VLTGTLEKYSRGDAGSRLKALGAKVSGSVSKKTSFVVAGAAAGSKLAKAQALGVTVLDET 734

Query: 713 QFLFLLQ 719
               +L 
Sbjct: 735 ALDHILA 741


>gi|182411830|ref|YP_001816896.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
 gi|254778148|sp|B1ZWH2|DNLJ1_OPITP RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|177839044|gb|ACB73296.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
          Length = 675

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/714 (31%), Positives = 364/714 (50%), Gaps = 49/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +A+  ++ L  +++ HD+ Y++ ++P I D EYDALKR    +  A+P  AR    
Sbjct: 1   MTPVEAQSRIAELRAQVARHDELYHRRAQPQIGDFEYDALKRELAELEAAWPQFARGA-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G +         H    +SL+  ++  +LR+F  R+ R  ++     + F +E
Sbjct: 59  -SPTEQVGDDRTEGFQVYRHRERMMSLDNTYSETELREFHDRLVRELERDG---LKFVIE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEV 187
           PKIDG  ++I YEKGK V A  RG+G  G+D++     I ++PR L       +P +IE+
Sbjct: 115 PKIDGLAVSITYEKGKLVRAVTRGNGIEGDDITTNALTIKSLPRELKRADGVPLPAVIEI 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV+++  +FL +N +    G   YANPRN A+G +++L+P ++  R L   ++G G  
Sbjct: 175 RGEVFLTTEEFLRINRQREEAGEPLYANPRNLAAGTIKQLDPREVAQRKLEVVLYGRGYV 234

Query: 247 SEI--FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  + Q +    ++  G P       A     I +   E+ ++R T  Y  DG V 
Sbjct: 235 EPASALPETQAQFHGWVKAWGLPTVERFWTATGADEIWAAVQELDALRDTFAYATDGAVV 294

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+D   LQ++ G  ++SPRW +++KFA  +A T+L  I +Q+GRTG+LTPVA L+PV + 
Sbjct: 295 KLDAVPLQRRAGSTSKSPRWAMAYKFAPDRAETQLRAITVQVGRTGVLTPVAELDPVQLA 354

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ ATLHN D I             +DIRVGD V V++AGE+IP V+ +    R P+
Sbjct: 355 GTTVSRATLHNRDEIAR-----------KDIRVGDFVYVEKAGEIIPAVIGVNPARRAPE 403

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             P+ FP  CP C + VV+           A RC    +C  Q   R++HF S+   +IE
Sbjct: 404 CVPYVFPEKCPECGTAVVQLEGE------VAVRCPN-FSCPVQVRRRVQHFASKACVDIE 456

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+  +D   +       +    DI+ L+R    +  K        + S   L ++I  
Sbjct: 457 GMGEAMVDVLVEK----GWVHSVPDIYQLKRENLLTLGKS------VEKSTDKLLEAIEA 506

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +   L RFI  LGI H GA  A+ LA+ +   +  A                   +  +
Sbjct: 507 SKRAELWRFIHGLGIPHAGAAAAKDLARTFGGLERLASARYEDFIREKASV-----IGGI 561

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+ +A AI+ ++  PRN   V+ L   V   +     N  S +  K  V TGTL  + R 
Sbjct: 562 GETMALAILAYFAEPRNRAVVDEL---VRVGVQPVVPNSGSALAGKTFVLTGTLPTLTRD 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A   +   G  VS+ +S+KT  ++ G+  GSKLEKA+ L V +++E +FL LL
Sbjct: 619 EATAQIEAAGGKVSSGVSKKTSYVLAGEEAGSKLEKARALAVPVIDEAEFLRLL 672


>gi|332184463|gb|AEE26717.1| DNA ligase [Francisella cf. novicida 3523]
          Length = 678

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/713 (36%), Positives = 397/713 (55%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    +    P    +   
Sbjct: 14  LAKPELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVDDNPQFKPT--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++ IE+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLVNVFTIEELRDFYDKIE--------YEIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L ++N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTINPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  F +G+G  S+ 
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLFSYGIGYFSKD 242

Query: 250 F--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F   + Q+E++Q +R  GF +++ +  A +F  +  Y+ +M   R+ L YDIDGLV+KV+
Sbjct: 243 FVHPETQFELMQLLRSFGFTISDNMFLAKSFSEVEEYHRKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDTIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVM 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRV DRV+V+RAG+VIP+VV  +   R PDAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAQI 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C S +    +       A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPKNCPVCDSTIENINDQ------AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++        A  I+ PADI+ L   Q T   ++         S  N+ DSI K + 
Sbjct: 466 AKLIEQLV----AADLIKYPADIYKLNFEQLTGLKRMGA------KSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F +            +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSEALANHFGSLESFREA----------KFEQLIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+Q+  NI  V+ LL       +  + E+  +    NK +V TGT +   R +
Sbjct: 566 MANNIVSFWQDSLNIQIVDELLANAINIQNPEKIEQAHNESFTNKTVVITGTFENYNRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV ++ E+    LL
Sbjct: 626 LTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVTVILEQDLQNLL 678


>gi|297559142|ref|YP_003678116.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843590|gb|ADH65610.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 775

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/748 (29%), Positives = 356/748 (47%), Gaps = 72/748 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            ++ R   + L QE+  H   YY    P+I D+EYD L R    I  ++P LA     + 
Sbjct: 11  PDEVRARHTELCQELDDHSYRYY-LGTPVISDAEYDTLMRELVGIEDSYPALATQ---DS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G  +++    V H +   SL   +++++L  +  R              +  E K
Sbjct: 67  PTQKVGAPISVDFAAVEHLVRMESLGNAFDVDELNAWADRASAEVPVNG-----YLCELK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGE 190
           IDG  + + YEKG+ V AA RGDG  GED++  +R I  +P  L       PE++EVRGE
Sbjct: 122 IDGLAVDLVYEKGRLVRAATRGDGRVGEDITLNVRTIGVVPERLDESVRPAPELLEVRGE 181

Query: 191 VYISKNDFLALNDEMIAVGRK-PYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--- 245
           V++   DF  LN+ + A G   P+ANPRNAA+G LR+ +P    TR L+  VHG+G    
Sbjct: 182 VFLPVEDFGKLNERITASGEHTPFANPRNAAAGSLRQKDPRVTATRPLSMIVHGVGAYSP 241

Query: 246 ----TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                 E+    Q +  + +   G P+++  R   T   +  Y     + R    Y+IDG
Sbjct: 242 AKDGGGEVAFTSQSQAYRLLGEWGLPLSDRYRVVTTMDEVREYVAHYAAHRHEPAYEIDG 301

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVD+F+LQ++LG  +R PRW I++K+  ++ +TRLLDI + +GRTG +TP   +EPV
Sbjct: 302 IVIKVDDFALQRRLGSTSRVPRWAIAYKYPPEEVTTRLLDIKVGVGRTGRVTPYGVMEPV 361

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN   ++            + + +GD V++++AG+VIP++V  +++ R
Sbjct: 362 VVAGSEVEFATLHNAREVER-----------KGVLIGDTVVLRKAGDVIPEIVAPVLDRR 410

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F+ P  CP C + +      +  +     RC    +C  Q  ERL    SR A 
Sbjct: 411 DGTERAFAMPESCPECGTTL-----GQQKEGDVDLRCPNARSCPGQLRERLFFVASRKAL 465

Query: 482 NIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTLQRRQQTSTTKI---------------- 524
           +IE LG        +  +PA   +R   D+F L                           
Sbjct: 466 DIEALGYVAATALTQPLEPARPPVRDEGDLFDLTVDMLLPIRTHVLDPDTTEPKTDPKTG 525

Query: 525 --------ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                    N  G    +V  L++ + + ++  L R + +L IRHVG   A  LA+++ S
Sbjct: 526 EPKVVSFFANKKGEPKKTVEKLFEQLEEAKSKPLWRVLVALSIRHVGPRAAEDLARHFRS 585

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
                      +A           V  VG  IA +I E++    +   V           
Sbjct: 586 MDAIRAASEEELAA----------VDGVGPTIAASIREWFSVDWHAEIVRKWADAGVRME 635

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              + +    +E   +V TG+L+   R  A+E + + G   +A +S+KT  ++VGD+PGS
Sbjct: 636 DEDDGSRPRHLEGVTVVVTGSLEGFSRDGAKEAIAERGGRATASVSKKTGFVVVGDSPGS 695

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           K +KA +LGV +++EE F  LL+     
Sbjct: 696 KYDKAVKLGVPVLDEEGFRVLLEAGPEA 723


>gi|15900984|ref|NP_345588.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae TIGR4]
 gi|81531953|sp|Q97QT2|DNLJ_STRPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|14972593|gb|AAK75228.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae TIGR4]
          Length = 652

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 359/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSCEELDAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + 
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKG 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|256785054|ref|ZP_05523485.1| NAD-dependent DNA ligase LigA [Streptomyces lividans TK24]
 gi|289768947|ref|ZP_06528325.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
 gi|289699146|gb|EFD66575.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
          Length = 735

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/741 (30%), Positives = 354/741 (47%), Gaps = 62/741 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR+  + L ++I  H   YY    P++ D+E+D L R  + +    P+L     P  
Sbjct: 17  PAEARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEELEERHPEL---RTPES 73

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  +N ++L  +  RI R   +       F  E K
Sbjct: 74  PTQKVAGAYATEFTAVQHPTRMLSLDNTFNDDELAAWFERIARELGE---QEYHFLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  + + YE+G+ V AA RGDG +GED++  +R I  IP  L    +P+++E+RGEVY
Sbjct: 131 VDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVPDLVEIRGEVY 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  +   G KP+AN RNAA+G LR+ +P    +R L+  VHG+G       
Sbjct: 191 FPMEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVHGIGTLEGYSG 250

Query: 252 KGQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +  +    ++  G P +   R  +   G+  +       R ++ ++IDG+V KVDE  
Sbjct: 251 LTRLSQAYDLLKAWGLPTSPHNRVVDGLDGVREFIAYYGENRHSVAHEIDGVVVKVDEIR 310

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  
Sbjct: 311 LQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEF 370

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN++ +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 371 ATLHNQEVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 419

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +         +     RC    AC AQ  ER+ +   R+  +IE  G   
Sbjct: 420 PAECPECGTPL-----KAMKEGDIDLRCPNARACPAQLRERVAYLAGRECLDIEHFGGVV 474

Query: 491 LDFFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTK----IE 525
                   +P+   +    D+F L                    +R  +T   K      
Sbjct: 475 AAALTGPLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKIATVFA 534

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   L   I + +   L RFI  L IR+VG   A++LA+ + S     Q   
Sbjct: 535 NKEGEPKKNTLALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQATE 594

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643
             +A              VG  IA A+ E++    +   V        P   R   E   
Sbjct: 595 EELAST----------DGVGGTIATAVKEWFAVDWHREIVRKWKAAGVPLEDRSTGEDEG 644

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q
Sbjct: 645 PRPLEGLTVVVTGTLENFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 704

Query: 704 LGVKIMNEEQFLFLLQQYNTT 724
           L V ++NE+ F  LL+Q    
Sbjct: 705 LKVPVLNEDGFAVLLEQGPEA 725


>gi|325125239|gb|ADY84569.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 671

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/716 (29%), Positives = 365/716 (50%), Gaps = 51/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+ +L   + 
Sbjct: 2   AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYSEL---KS 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +    ++GGE+N  L KV H +P LS+  +++ E+L +F  R+ +       + + + +
Sbjct: 59  ADSITQRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++ YE+G    A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE
Sbjct: 115 ELKIDGLSLSLEYEEGCLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
            Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++        
Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPP-A 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+ 
Sbjct: 232 GIDSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDL 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ  LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G+ + 
Sbjct: 292 ALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTVA 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+ 
Sbjct: 352 RASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYE 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C   +V            A RC    +C AQ  E + HF SR A NI GLG +
Sbjct: 401 VPTKCPSCGEDLVHLDEE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPK 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +      +     +   AD++ L             +  F + S+ NL  +I++ R  S
Sbjct: 454 IVKQLIAKD----LVHNVADLYYLTADDL------SQLDHFKEKSINNLLVAIDQSRKNS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E  +F LGI +VG + A+ +A+ + +    A          +     L  +  +G  IA
Sbjct: 504 VELVLFGLGIDNVGGKAAQLIARKFKNMSKIA----------SASVQELTAIDTIGMTIA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +++  ++Q       +  L +       +G   +   +  + K +V TG L    R +  
Sbjct: 554 ESLTAYFQPEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFT 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + +  LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T
Sbjct: 614 KKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669


>gi|237733138|ref|ZP_04563619.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383820|gb|EEO33911.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 664

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/703 (31%), Positives = 354/703 (50%), Gaps = 47/703 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
               L+  I YH+D YY    P I D EYD + +    +    P+   S   + P  K+G
Sbjct: 6   RYKELKATILYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITS---DSPTQKVG 62

Query: 80  GEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G         V H++P LSL+ +++ ED+  F+  +             F +E KIDG  
Sbjct: 63  GSAKREAGVLVRHNVPMLSLQDVFSKEDVDAFVADMQEQLV-----DPTFVVEYKIDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
           + +RY  GK   A  RGDG   GEDV+   + I  +   L   I E +EVRGEVY++   
Sbjct: 118 MALRYVNGKLDVAVTRGDGVLQGEDVTVNAKVIKDVKNTLKEPI-EYLEVRGEVYMTNEA 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+     G+K +ANPRN A+G LR+L+ +    R L+ FV  +            E
Sbjct: 177 FDKVNEIQEIKGKKLFANPRNCAAGTLRQLDSSITKERNLSMFVFNIQDAKGREFISHSE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
             + ++  G  +    +   T   +      +   R  L YDIDG V K+D F+ +++LG
Sbjct: 237 GYEYLKRQGIKIIEDYKICKTAKEVWEAIEAIGENRDKLGYDIDGAVVKIDSFADRQKLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PRW +++K+  ++  T+LL I++ +GRTG +TP A  EP+ + G  ++ ATLHN+
Sbjct: 297 ATAKVPRWAVAYKYPPEEKETKLLAIELSVGRTGRITPTAIFEPIRLCGTTVSRATLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I  L           D+R+GD ++V ++GE+IPKV  ++  +R  D+ P+   + CP+
Sbjct: 357 DFIDDL-----------DVRIGDTIVVYKSGEIIPKVKGVVKEKRPADSVPYVIGNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR+ +       A  +CT   +C ++ +  + +FV RDA +I+G G   ++    
Sbjct: 406 CGAPAVREGD------NADIKCTNH-SCPSKLVRNIVNFVGRDAMDIKGFGFAYVETLVD 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  +DI+ L  ++Q    K   I+G    S  NL ++I   +N    + + S
Sbjct: 459 H----GYLKDLSDIYGLIDKRQELLDK--KIIGLV-KSTDNLLNAIEGSKNNDAIKLLTS 511

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A+SL K + S  N  +            +  LI V  +GDI A AI+ ++
Sbjct: 512 LGISNVGKSAAKSLMKKFKSIDNLMKA----------SYAQLIEVNDIGDISAMAIINYF 561

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +NP N   V+ L +          ++     + K  V TGTL  + R  A E + + G  
Sbjct: 562 KNPDNQAVVQRLKEYGVNMNIIEAQDGDERFDGKTFVVTGTLPTLSRKAASELIEKHGGK 621

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KTD ++ G+N GSKL KAQ LG+ +++EE  L +++
Sbjct: 622 VSGSVSKKTDYLLAGENAGSKLTKAQNLGINVISEETLLEMVK 664


>gi|168486469|ref|ZP_02710977.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00]
 gi|183570508|gb|EDT91036.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00]
          Length = 652

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 359/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + 
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKG 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|119717662|ref|YP_924627.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614]
 gi|166216220|sp|A1SMA5|DNLJ_NOCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119538323|gb|ABL82940.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614]
          Length = 752

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/720 (29%), Positives = 360/720 (50%), Gaps = 43/720 (5%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E   + +EI      YY    P I D+++D   RR +A+   FP+L     P+ P   
Sbjct: 64  REEHRLIAEEIEEARWRYYVLDSPTIDDADFDRRMRRLEALEEEFPEL---RTPDSPTQT 120

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG ++       H     SL+  +++E++  +  R+ R              E K+DG 
Sbjct: 121 VGGAVSTDFTSHPHLRRMESLDNAFSVEEVEAWYARLRR----DGVEDPALLCELKVDGL 176

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVYI 193
            I + YE+G+ V A  RGDG +GEDV++ ++ I ++P  L+      +P ++EVRGEV++
Sbjct: 177 AINLLYEEGRLVRALTRGDGTTGEDVTSNVKTITSVPHRLTGTDEFPVPALVEVRGEVFL 236

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
               F  LN+ ++  G+ P+ANPRN+A+G LR+ +P    +R L    HG+G+      +
Sbjct: 237 PVEAFERLNESLLEAGKAPFANPRNSAAGSLRQKDPRITASRALGMVCHGIGERRGFEPQ 296

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVYKVDEFSL 311
            Q      +   G P ++ VR  +T  G+  Y     + R T+ PY+IDG+V KVD+ +L
Sbjct: 297 AQSHAYDALAAWGLPTSDQVRVVSTLKGVEGYIENAGARRHTIVPYEIDGVVVKVDDVAL 356

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I+ K+  ++ + +LL+I + +GRTG +TP A +EP  + G+ + NA
Sbjct: 357 QRRLGSTSRAPRWAIAFKYPPEEVNAKLLEIRVNVGRTGRVTPYAVMEPTKVAGSTVENA 416

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   ++  D      R G     GD V++++AG+VIP+++  ++  R    QP+  P
Sbjct: 417 TLHNFYEVERKDV-----RPGGPGDPGDTVILRKAGDVIPEILGPVLALRPEGLQPWVPP 471

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +V     +  +     RC     C  Q  ER+    SR+AF+IEGLG +  
Sbjct: 472 TTCPSCGTPLV-----EQKEGDKDRRCPNHEKCPGQLRERVFFVASRNAFDIEGLGYEAA 526

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD------VSVTNLYDSINKR 545
                +E     I    D+F L                  +       +   L D+++K 
Sbjct: 527 VALLDAE----VIANEGDVFDLDAAALLRAPLFTRAPKKDEDGPQLSANGQRLLDNLDKA 582

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           + + L R + +L IRHVG +  R+LA  + S           +A              VG
Sbjct: 583 KQVPLWRVLVALSIRHVGPKAGRALATEFGSMAAIRAATEEQLAAA----------EGVG 632

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             IA+A++E+++ P ++  V+   +         +++    +    +V TG+L    R  
Sbjct: 633 PTIAEAVIEWFKEPWHVEIVDKWERAGVTMADERDESTPRTLAGLTVVVTGSLVDFSRDS 692

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           A+E +   G   +  +S+KTD ++VG+N GSK +KA+QLGV +++E  F  LL      L
Sbjct: 693 AKEAILSRGGKAAGSVSKKTDYVVVGENAGSKADKAEQLGVPVLDEAGFKTLLDGGPAAL 752


>gi|213964541|ref|ZP_03392741.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46]
 gi|213952734|gb|EEB64116.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46]
          Length = 703

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 209/724 (28%), Positives = 353/724 (48%), Gaps = 51/724 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +    R++   L   I  +   YY  ++P+I D+EYD + R+   +   +PDL  
Sbjct: 23  PASEPAPADVREKWQELATRIRDNAALYYT-AQPVISDAEYDEMFRQLQQLEEQWPDLVV 81

Query: 68  SEDPNGPLNKIGGEM-----NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
              P+ P  ++G ++           V H     SL+ +++ ++LR ++ R         
Sbjct: 82  ---PDSPTQQVGAQVEAPADGEVFEPVEHLERLYSLDNVFDEQELRGWLART-------- 130

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNI 181
             +  +  E KIDG  I + YEKG+ V AA RGDG  GE+V+A  R I  IP  +   N+
Sbjct: 131 -PASTYLTELKIDGLSIDLVYEKGRLVRAATRGDGRVGENVTANARTIEDIPHEISGENV 189

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240
           P+++EVRGEV+IS  +F  +N + +  G+KP+ANPRNAA+G LR+ +  ++  R L+   
Sbjct: 190 PDVLEVRGEVFISLEEFERINSDRVDAGQKPFANPRNAAAGSLRQKDVAEVAKRRLSMIC 249

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           HG+G       + Q+E  + +   GF V+    Q ++   +V         R    +++D
Sbjct: 250 HGIGHIEGWRPQSQHEAYRALGEWGFHVSPYTNQVHSADDVVKQMQYWGEHRHDAIHEMD 309

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           GLV KVD  S Q+ LG  +R+PRW I++K+  ++ +T LLDI + IGRTG  TP A ++P
Sbjct: 310 GLVVKVDSLSEQRALGATSRAPRWAIAYKYPPEEVTTDLLDIRVSIGRTGRATPYAVMKP 369

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ +  ATLHN   +             + + +GDRV +++AG+VIP+V+  + + 
Sbjct: 370 VFVAGSTVEMATLHNPSEVHR-----------KGVLIGDRVTIRKAGDVIPEVLGPVADL 418

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    + + +P+ CP C +R+            A  RC     C  Q   R++   SR  
Sbjct: 419 RDGSERKYIYPTLCPECGTRL-----APAKDSDADWRCPNTRYCPGQLRRRIEFLASRSG 473

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG-DVSVTNLY 539
           F+IE LG++              +   + +F L       T           + +   L 
Sbjct: 474 FDIENLGERGAADLI----HRGVLDDESRLFDLTEEDLLGTEVYTTASRKSLNANGKKLL 529

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I+  ++  L R + SL IRHVG  +AR+LA+ + S +         I+          
Sbjct: 530 ANIDAAKDKELWRVLVSLSIRHVGPTVARTLAQKFGSMEALRAASREEISA--------- 580

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  +G+II  ++ ++++   +   VE                    +E   +V TG+L+
Sbjct: 581 -IDGIGEIIGDSVADWFEVDWHREVVERWEAAGVRMADEVTDRPDQVLEGLTVVVTGSLE 639

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R  A+E +   G   +  +S+KTD ++VG+N GSK  KA++LG+ I++E+ F  LL+
Sbjct: 640 DFTRDSAKEAIISRGGKAAGSVSKKTDYVVVGENAGSKATKAEELGLPILDEDGFKRLLE 699

Query: 720 QYNT 723
               
Sbjct: 700 TGQA 703


>gi|320008426|gb|ADW03276.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331]
          Length = 731

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/742 (28%), Positives = 344/742 (46%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + R+  + L ++I  H   YY   +P++ D+E+D   R  +AI H  P+L     P+ 
Sbjct: 14  PAEVRERHALLAEQIEEHRFRYYVKDQPVVDDAEFDRQMRALEAIEHEHPEL---RTPDS 70

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  ++  +L  +  R+ +           F  E K
Sbjct: 71  PTQKVAGPYTTEFTSVEHRERLLSLDNAFDDGELAAWAERVAKDVG---GGGYHFLCELK 127

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L   +IP ++E+RGEV+
Sbjct: 128 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPLRLKGDDIPALVEIRGEVF 187

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 188 FPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGFGI 247

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               +    +R  G P     +   +   +  +       R ++ ++IDG+V K+DE  L
Sbjct: 248 DRLSQAYDLLREWGLPTARHNKVVESLDEVREFIAWFGENRQSVEHEIDGVVVKLDEIPL 307

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  A
Sbjct: 308 QGRLGSTSRAPRWAIAWKYAPQEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFA 367

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN++ +K            + + +GD V++++AG+VIP+++  +V+ R      F  P
Sbjct: 368 TLHNQNVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEHAFVMP 416

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C + +         +     RC    +C AQ  ER+ +   R   +I+  G    
Sbjct: 417 SECPECGTPL-----RPMKEADIDLRCPNARSCPAQLRERVAYLAGRKCLDIDHFGYVAA 471

Query: 492 DFFFK-SEDPAFSIRIPADIFTLQRRQQ--------------------TSTTK----IEN 526
               +  E     +    D+F L   Q                     T   K      N
Sbjct: 472 AALTRPLEPEEPPLLDEGDLFGLTVEQLLPIRAYFLDPDSGLPKRDPKTGEEKIATVFAN 531

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + + I   R   L R +  L IRHVG   A  LA+ + S +        
Sbjct: 532 QQGEPKKNALGMLEGIAAARQAPLARILTGLSIRHVGPVAAVELARQFRSIERI------ 585

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVS 644
               +      L     VG IIA ++ +++    +   +    +           E    
Sbjct: 586 ----DEASEEELAAADGVGPIIAASVKQWFAEDWHREILRKWREAGVRMEDEGAGEDEGP 641

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL    R  A++ +  LGA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 642 RPLEGLTVVVTGTLAAHTRDGAKDALQSLGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQL 701

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
            V +++EE F  LL+Q     R
Sbjct: 702 KVPVLDEEGFAVLLEQGPDAAR 723


>gi|167756540|ref|ZP_02428667.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402]
 gi|167702715|gb|EDS17294.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402]
          Length = 664

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/703 (31%), Positives = 354/703 (50%), Gaps = 47/703 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
               L+  I YH+D YY    P I D EYD + +    +    P+   S   + P  K+G
Sbjct: 6   RYKELKATILYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITS---DSPTQKVG 62

Query: 80  GEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G         V H++P LSL+ +++ ED+  F+  +             F +E KIDG  
Sbjct: 63  GSAKREAGVLVRHNVPMLSLQDVFSKEDVDAFVADMQEQLV-----DPTFVVEYKIDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
           + +RY  GK   A  RGDG   GEDV+   + I  +   L   I E +EVRGEVY++   
Sbjct: 118 MALRYVNGKLDVAVTRGDGVLQGEDVTVNAKVIKDVKNTLKEPI-EYLEVRGEVYMTNEA 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+     G+K +ANPRN A+G LR+L+ +    R L+ FV  +            E
Sbjct: 177 FDKVNEIQEIKGKKLFANPRNCAAGTLRQLDSSITKERNLSMFVFNIQDAKGREFISHSE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
             + ++  G  +    +   T   +      +   R  L YDIDG V K+D F+ +++LG
Sbjct: 237 GYEYLKRQGIKIIEDYKICKTAKEVWEAIEAIGENRDKLGYDIDGAVVKIDSFADRQKLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PRW +++K+  ++  T+LL I++ +GRTG +TP A  EP+ + G  ++ ATLHN+
Sbjct: 297 ATAKVPRWAVAYKYPPEEKETKLLAIELSVGRTGRITPTAIFEPIRLCGTTVSRATLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I  L           D+R+GD ++V ++GE+IPKV  ++  +R  D+ P+   + CP+
Sbjct: 357 DFIDDL-----------DVRIGDTIVVYKSGEIIPKVKGVVKEKRPADSAPYVIGNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR+ +       A  +CT   +C ++ +  + +FV RDA +I+G G   ++    
Sbjct: 406 CGAPAVREGD------NADIKCTNH-SCPSKLVRNIVNFVGRDAMDIKGFGFAYVETLVD 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  +DI+ L  ++Q    K   I+G    S  NL ++I   +N    + + S
Sbjct: 459 H----GYLKDLSDIYGLIDKRQELLDK--KIIGLV-KSTDNLLNAIEGSKNNDAIKLLTS 511

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A+SL K + S  N  +            +  LI V  +GDI A AI+ ++
Sbjct: 512 LGISNVGKSAAKSLMKKFKSIDNLMKA----------SYAQLIEVNDIGDISAMAIINYF 561

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +NP N   V+ L +          ++     + K  V TGTL  + R  A E + + G  
Sbjct: 562 KNPDNQAVVQRLKEYGVNMNIIEAQDGDERFDGKTFVVTGTLPTLSRKAASELIEKHGGK 621

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KTD ++ G+N GSKL KAQ LG+ +++EE  L +++
Sbjct: 622 VSGSVSKKTDYLLAGENAGSKLTKAQNLGINVISEETLLEMVK 664


>gi|296110658|ref|YP_003621039.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154]
 gi|295832189|gb|ADG40070.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154]
          Length = 681

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/723 (33%), Positives = 388/723 (53%), Gaps = 51/723 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  PIE L+   A++E+++ ++ +  +   YY+   P++ D  YDAL  R   +  AFP 
Sbjct: 4   EFTPIEQLTTPMAQQEIANHQETLLQYGVAYYEQDAPLVEDYVYDALYARLVELEAAFPQ 63

Query: 65  LARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                 P+ P  K+GG +    L KV H  P LSL  ++++E+L ++  R  +    +  
Sbjct: 64  FIN---PDSPTQKVGGAITKSGLEKVVHPAPMLSLGDVFSLEELEEWDARTTKTLGFQS- 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  + + Y  GK + A+ RG+G  GEDV+A ++ I  IP++L  N P 
Sbjct: 120 ---AYNLELKIDGLAVALTYVDGKLIQASTRGNGMIGEDVTANVKMIKVIPQIL--NEPL 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
            IEVRGE+Y+SK+ F  LN++    G  P+ANPRNAA+G LR+LN + +  R L+ FV+ 
Sbjct: 175 TIEVRGEIYMSKSSFATLNNQRETEGLAPFANPRNAAAGSLRQLNTSIMKQRQLSAFVYY 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
             +   +    Q + L++   LG P ++          I  Y ++  + R  L Y IDG+
Sbjct: 235 TAEPDILGVTTQSQALERFHELGLPTDHHNHVILKMPDIADYISKYSADRDKLSYGIDGV 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+E   Q  LG   + PRW I++KF  ++A T L DI+  +GRTG +TP A ++PV 
Sbjct: 295 VVKVNELDDQTDLGNTVKIPRWAIAYKFPPEEALTILRDIEWTVGRTGAVTPTAVMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+LHN DY+             + +R+GD V + +AG++IP++  +I+++R 
Sbjct: 355 LAGTTVQRASLHNPDYLND-----------KGVRLGDTVTLHKAGDIIPEIGQVILSKRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            ++QP++ P  CP C+S++V            A RC    ACSAQ  E L HF SR+A N
Sbjct: 404 VNSQPYNIPLLCPACESKLVHLEGE------VALRCINP-ACSAQIQEGLAHFASRNAMN 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG+G + +    +    A  I   A I+ L   Q  +  K      F + SV+NL ++I
Sbjct: 457 IEGMGPRVIAQLLQ----AGFIEDVASIYRLNATQLHALDK------FKEKSVSNLLNAI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + ++ SLE+ +F LGIR VGA+ AR +A+ + +    A+   + IA           + 
Sbjct: 507 ERSKDNSLEKLLFGLGIRMVGAKAARLIAEKFKTLSVIARATVSEIA----------NID 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQK 660
            +G+ IA+++V+++  P +   ++ L           E  +  SS    KK+V TG L +
Sbjct: 557 GIGETIARSLVQYFNMPESQQLLKELTAAGVNQSYLSEVVIDESSFFYGKKIVLTGKLSE 616

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R    +++   GA VS+ +S KTD++I G + GSKL KA +LG+ +  E Q +   ++
Sbjct: 617 SNRSAVSKWLQNHGASVSSAVSSKTDLLIAGTDAGSKLAKANELGIAVWTESQLIAAQKE 676

Query: 721 YNT 723
            + 
Sbjct: 677 EDI 679


>gi|254373281|ref|ZP_04988769.1| hypothetical protein FTCG_00864 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571007|gb|EDN36661.1| hypothetical protein FTCG_00864 [Francisella novicida GA99-3549]
          Length = 678

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 395/713 (55%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  + +G+G  S+ 
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 250 F--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F   + Q+E++  ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRV DRV+V+RAG+VIP+VV  +   R PDAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAQV 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S +    +       A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTSCPVCDSAIENVNDQ------AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++    +      I+ PADI+ L   Q T   ++         S  N+ DSI K + 
Sbjct: 466 AKLIEQLVAAN----LIKYPADIYKLNFDQLTGLERMGA------KSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ VG   + +LA ++ S ++F +            +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------KFEQLIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE LL       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|149012887|ref|ZP_01833800.1| DNA ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182684133|ref|YP_001835880.1| DNA ligase [Streptococcus pneumoniae CGSP14]
 gi|254781428|sp|B2IPZ1|DNLJ_STRPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147763176|gb|EDK70116.1| DNA ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182629467|gb|ACB90415.1| DNA ligase [Streptococcus pneumoniae CGSP14]
 gi|301801994|emb|CBW34723.1| DNA ligase [Streptococcus pneumoniae INV200]
          Length = 652

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 359/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + 
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKG 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|113954059|ref|YP_731994.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9311]
 gi|122945488|sp|Q0I6C8|DNLJ_SYNS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|113881410|gb|ABI46368.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9311]
          Length = 697

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/718 (29%), Positives = 352/718 (49%), Gaps = 55/718 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +    L + ++     YY    P + D  YD L R    + H    L      + P  ++
Sbjct: 15  ERAEELRRLLNRAAHAYYVLDAPDMEDPVYDQLYRELQDLEHQDSTLV---SADSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-----DNSIFFTLEPK 133
           GG +      V+H I   SL+  +N ++L  + +R+ +   +         ++    E K
Sbjct: 72  GGRLADGFRSVSHRISLFSLDNAFNRDELHGWYSRLLKALDRTPAAGSPPPTLPMVGELK 131

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           IDG  + + YE G  V AA RGDG  GE+++A +R I +IP  L L  +P  +EVRGE +
Sbjct: 132 IDGNALALSYENGVLVRAATRGDGEQGEEITANVRTISSIPLRLHLEPVPAWVEVRGEAF 191

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           I    F A+N+E ++     +ANPRNA +G LR+L+P+ +  R L+FF + L    E   
Sbjct: 192 IPDATFHAINNERLSRDESLFANPRNACAGTLRQLDPSVVAARRLDFFAYTLHLPDEWQE 251

Query: 252 K---GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +    Q++ LQ +   GF VN           +  +++   + R  L Y  DG+V K+++
Sbjct: 252 RRPLTQWDALQWLGDAGFKVNPNAGLLPDLQAVEQFFDTWDTERRQLDYATDGVVVKLND 311

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ   G   ++PRW I+ K+  ++A +++L I  Q+GRTG++TPVA  EPV + G  +
Sbjct: 312 LRLQDAAGFTQKAPRWAIALKYPAEEAPSKILRISYQVGRTGVITPVAEFEPVGLAGTSV 371

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D +  L           D+  GD ++V++AGE+IP+VV ++   R   AQP 
Sbjct: 372 SRASLHNADRLVEL-----------DLHDGDTIVVRKAGEIIPEVVRVLPELRPALAQPL 420

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                CP C S +VR+ N       +A RC    +C A     L+H+VS+ A +I+GLG 
Sbjct: 421 EITKTCPACGSTLVRESNE------SATRCINS-SCPAILRGALRHWVSKGAMDIDGLGS 473

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           ++  AD++ L      S  ++ +       S  NL  ++N  R+ 
Sbjct: 474 KLIEQLVDR----GLVQSIADLYRLDMALLGSLERMGS------KSAENLIQALNASRSQ 523

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + ++ LGI HVG   A+++   + +  +  Q   +          S+  +  VG  I
Sbjct: 524 GWAKQLYGLGIHHVGDVNAKAITTAFPNADSLNQAACHA-------PESITAIFGVGKEI 576

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-------VSSEIENKKLVFTGTLQKI 661
           AQ++ +++ +P N   ++ L           E+         +  +     V TGTL  +
Sbjct: 577 AQSLQQWFSSPANQRLLDELRSLGFSLSLNEEEQSRATTAAANHHLTGSTFVLTGTLPTL 636

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R +A+E +   G  VS  +S+KT  ++ G+  GSKL KAQ+LGV I++EE    +L+
Sbjct: 637 TRSQAKEQIEACGGKVSGSVSKKTSYLVAGEEAGSKLTKAQELGVSILDEEALQNMLR 694


>gi|307704876|ref|ZP_07641768.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597]
 gi|307621589|gb|EFO00634.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597]
          Length = 652

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 361/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A +   I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKHLEQLGFVVNPKRILAESMDEIWNFIQEVGEERENLPYDIDGVVIKVNDLAGQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R    +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKR-FSEEKLDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 DSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ L+              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLKEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++ S +  AQ           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIETLAQA----------DPEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +  V+ +         + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELREAGVNLAYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEVWLESL 652


>gi|291538763|emb|CBL11874.1| DNA ligase, NAD-dependent [Roseburia intestinalis XB6B4]
          Length = 671

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/710 (29%), Positives = 361/710 (50%), Gaps = 50/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+   ++  L  +I+YH D YY    P I D E+D L ++   +    P+L      
Sbjct: 1   MTPEE---QIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTK--- 54

Query: 72  NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P   +GG     +   V H++P LSL+ +++ E++  F+ ++         +   F +
Sbjct: 55  DSPTQHVGGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMKEQL-----DDPEFVV 109

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           E KIDG  + +RYE G    A  RGDG   GEDV+A  + I  + + L    PE +E+RG
Sbjct: 110 EYKIDGLSMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLKDK-PEYLEIRG 168

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY+   DF  +N++   +G+K +ANPRN A+G LR+L+      R L+ FV  + +   
Sbjct: 169 EVYMKNEDFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRG 228

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      +  + ++  G P+    +   T   + +    +   R  L YDIDG V K++ 
Sbjct: 229 MDIMTHTQGYEFLKRQGIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINR 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           +S ++ LG  ++ P+W I++K+  ++  T+LLDI++ +GRTG +TP A  EPV + G  +
Sbjct: 289 YSDRELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSV 348

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+D+I  L           D+ +GD ++V ++GE+IPKV ++   +R    + F
Sbjct: 349 SRATLHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKEVRKEKRPDGWKRF 397

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C ++  R+      K  A  +CT    C AQ    + +FV RDA +I+G G 
Sbjct: 398 MIPDVCPVCGAKTERE------KDTADIKCT-SPNCPAQLERHIINFVGRDAMDIKGFGT 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++   +       I+  ADIF L+  ++    +   I+G  + +   L ++I K +  
Sbjct: 451 VYIEELVR----LGYIKDIADIFELKDHREELIEQ--GIIG-KEKNTDKLLETIEKAKEN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
                +   GI +VG   A+++ K + S          I+   N D  +L+ V  VG++ 
Sbjct: 504 DAYMLLTGFGIPNVGKAAAKTIMKRFSS----------ILDLENADRDALMEVDDVGEVS 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A  I  F+ + +N   +  L            + + S +  K +V TGTL  + R +A E
Sbjct: 554 ADCIFRFFHDEKNKEMIARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAE 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            V + G  VS  +S+KTD ++ G++ GSKL KAQ+LG+ ++ E +   LL
Sbjct: 614 LVEKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663


>gi|295836378|ref|ZP_06823311.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB74]
 gi|295825992|gb|EDY45591.2| DNA ligase, NAD-dependent [Streptomyces sp. SPB74]
          Length = 818

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/745 (29%), Positives = 355/745 (47%), Gaps = 66/745 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + R+E S + +E+  H   YY   +P++ D+++DAL RR  A+    P L     P+ 
Sbjct: 49  PAEVREEHSRVAREVDEHRYRYYVNDQPVVSDADFDALLRRLTALEEEHPQL---RTPDS 105

Query: 74  PLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           P  K+ G+         V H    LSL+ +++ E L  +  R+ +       +   +  E
Sbjct: 106 PTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAKEVGAPGYH---YLCE 162

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
            K+DG  + + YE G+   AA RGDG  GED++  +R I  IP  L    +PE++EVRGE
Sbjct: 163 LKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGERVPELVEVRGE 222

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY    DF ALN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G     
Sbjct: 223 VYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGF 282

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                    + +   G P     + A++  G+ S+       R ++ ++IDG+V K+DE 
Sbjct: 283 TIDRLSHAYELLHEWGLPTAKHNKVADSLDGVRSFIRYYGEHRHSVEHEIDGVVVKLDEI 342

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  +R+PRW  + KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + 
Sbjct: 343 PLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAGSEVE 402

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F 
Sbjct: 403 FATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVADLRDGSERAFV 451

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C AQ  ER+ +   R + +IE LG  
Sbjct: 452 MPAECPECGTPL-----RAMKEGDIDLRCPNARSCPAQLRERIFYLAGRKSLDIEHLGYV 506

Query: 490 QLDFFFKSEDPAF-SIRIPADIFTLQRRQQ--------------------TSTTK----I 524
                 +  +P+   +R   D+F L   +                     T   K     
Sbjct: 507 AATALTQPLEPSEPPLRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPVTGEEKIVTFF 566

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
            N  G    +  ++ ++I   +   L + +  L IRHVG   A +LA+ + S        
Sbjct: 567 ANKEGVAKKNALSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRIFAAE 626

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNICAVEALLKEVSPSIGRHEK 641
            N +A              VG  IA ++ ++Y   +N  +   +               +
Sbjct: 627 ENELAET----------EGVGPTIAASLKQWYDAEENDWHREILRKWKAAGVRMEADESE 676

Query: 642 NVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
             S    +E   +V TGTL++  R  A+E +   GA V+  +S+KT  ++VGDNPGSK +
Sbjct: 677 TDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYD 736

Query: 700 KAQQLGVKIMNEEQFLFLLQQYNTT 724
           KA  L V ++ E+ F  LL Q    
Sbjct: 737 KALSLKVPVLEEDGFAILLDQGPEA 761


>gi|260887264|ref|ZP_05898527.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
 gi|330838979|ref|YP_004413559.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
 gi|260863326|gb|EEX77826.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
 gi|329746743|gb|AEC00100.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
          Length = 669

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/710 (30%), Positives = 357/710 (50%), Gaps = 47/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I++ +KEL+ L + I +H+  YY    P I D EYD L  +  A+   +P+L      
Sbjct: 1   MDIQEVKKELAQLRRTIRHHNVRYYNDDNPEISDYEYDQLMLQLKALEREYPELITE--- 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           N P  K+GG    +    V H +P LSL+ +++ E++  F+  I    +        F +
Sbjct: 58  NSPTQKVGGTAKRTAGTLVRHDVPMLSLQDVFSREEIEAFVRDIEARMENPV-----FVV 112

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           E KIDG  + +RYE G    A  RGDG   GEDV+   + I  + + L   +P   EVRG
Sbjct: 113 EEKIDGLSLALRYENGTLSRAITRGDGIVQGEDVTENAKVIKDVVQKLKEPLP-YFEVRG 171

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY++K  F A+N+    +G K +ANPRN A+G LR+L+      R L+ FV  L     
Sbjct: 172 EVYMTKAAFEAVNERRQLIGLKLFANPRNCAAGTLRQLDSRITKERGLSLFVFNLQAVRG 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              +   E    M   G  V +      T   +     ++ + R  LPYDIDG V K+++
Sbjct: 232 KDFQTHVEAYDFMNRQGIKVIHAFHVCRTAEEVWDAIEQIGASRGDLPYDIDGAVVKLND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           FS ++ LG  +++PRW I++K+  ++  + +  I + +GRTG +TP A  +P+ + G  +
Sbjct: 292 FSQRESLGATSKAPRWAIAYKYPPEEKESVVRSITLSVGRTGRITPTATFDPIRLCGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN+D+I  L           D+RVGD V+V ++GE+IPK+  ++  +R    +PF
Sbjct: 352 ERATLHNQDFIDDL-----------DVRVGDTVVVYKSGEIIPKIKAVVKEKRPEGTEPF 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                CP+C ++  R+ +       A  +C    AC AQ    + +FVSRDA +I+GLG+
Sbjct: 401 KIGDRCPVCGAKAEREADS------ADVKCIN-QACPAQVESHILNFVSRDAMDIKGLGE 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +    +       +    DIF L+  ++     I   +   + +   L  +I + +  
Sbjct: 454 KNIAALIEK----GFLHTIVDIFRLKEHRE---ELISQGVVGKEKNTDKLLAAIEEAKKN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             +R +  LGI  +G   A +L +++ + +      +  I          + V  +G+  
Sbjct: 507 EPQRLLTGLGIPGIGKAAAAALMQHFKTLEALENASDEAI----------LAVRDMGETS 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             AI  ++QN  N      L +    +  +       E+ +   V TGTL+   R +  E
Sbjct: 557 VAAIRSYFQNEGNAKICRELQQLGVATAVQERAAQGDELADMSFVVTGTLRHFGRREITE 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + Q G  V++ +S+KTD ++ G+N GSKL+KA+QLG++I+ EE+FL L+
Sbjct: 617 LIEQHGGRVTSSVSKKTDCLVAGENAGSKLQKAEQLGIRILTEEEFLQLI 666


>gi|120602092|ref|YP_966492.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
 gi|166215378|sp|A1VC99|DNLJ1_DESVV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|120562321|gb|ABM28065.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
          Length = 680

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/718 (33%), Positives = 373/718 (51%), Gaps = 55/718 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I Q +   + L  E++ H+  YY+   P I D+EYD L R    +   +P L    D  
Sbjct: 3   NIPQHQSRAAWLRAELARHNRLYYELDTPEISDAEYDTLYRELVNLETLWPALM---DEA 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GGE+   L K  H++   SL+  ++ ++   FI R+Y    +       F  +P
Sbjct: 60  SPTQRVGGEVLDRLEKQAHTMRMYSLDNAFSRDEWGAFIQRMYNTLPETPS---SFWCDP 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191
           K+DG  + + YE G F  A  RG+G  GE V+A +R +  +P  L  N +P  +EVRGEV
Sbjct: 117 KMDGLALEVIYENGVFTSALTRGNGAEGEVVTAAMRTVRNLPLRLRGNNVPHRLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG----KT 246
            I+K DF  LN    AVG K +ANPRNAA+G +R+L+ +    R L F  +G+G      
Sbjct: 177 VIAKADFEQLNARQSAVGGKVFANPRNAAAGSVRQLDTSITAGRPLQFLAYGVGQVVLDG 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                    +++ ++R  GF      R   +   + +YY  + + R +L  +IDG+V KV
Sbjct: 237 GTAPWTTHSDLMARLREWGFDSPPEGRLCTSPDEVWAYYEMLGARRESLAIEIDGVVAKV 296

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+ LG  AR+PRW ++ KF   Q  TRL DI +Q+GRTG+LTPVA LEPV +GG 
Sbjct: 297 DDTEAQEALGFTARAPRWALALKFPAMQVRTRLQDIRVQVGRTGVLTPVAILEPVRVGGV 356

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATLHN   I+            + + +GD VLV+RAG+VIP+VV  +V +R    +
Sbjct: 357 EVSRATLHNAYEIED-----------KGLMLGDMVLVQRAGDVIPEVVRPLVEDRTGGER 405

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF FP+ CP C S V +  +        AHRC   ++C A + + + HFVS+   ++ G 
Sbjct: 406 PFVFPTTCPECGSVVHKPNDE------VAHRCIN-VSCPAVRRQSIIHFVSKAGLDVRGF 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+  +         A  +   AD+F+L         ++      G  S  N   S++  R
Sbjct: 459 GEHIVQQLVD----AGRVTTAADLFSLTTVDLMGFERM------GPTSAANAIASLDAAR 508

Query: 547 N-ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
              +L R I +LGIRHVG + AR+LA +++      +           D   L+ +P +G
Sbjct: 509 TGATLARLICALGIRHVGEQTARTLATHFVDLDAMRKA----------DGEKLLHLPDIG 558

Query: 606 DIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +A +I  F+ N  NI  +E L         P          S+++  KL+FTG+LQ++
Sbjct: 559 PEVAASIRCFFDNQSNIELLEQLRDKGLWPRKPDANGPFVREGSQLQGLKLLFTGSLQRM 618

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R +A+      GA V + +S+  D+I+ G + GSKL++A+ LG+ +++E+ F  LL+
Sbjct: 619 SRSEAKRMAEAAGAHVVSNVSKSLDMIVAGADAGSKLDQAKSLGLHVIDEDAFANLLK 676


>gi|153003607|ref|YP_001377932.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5]
 gi|166215389|sp|A7H8A2|DNLJ_ANADF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152027180|gb|ABS24948.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5]
          Length = 699

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/728 (32%), Positives = 371/728 (50%), Gaps = 58/728 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A    + L   I   D  YY   +P++ D+EYD L R    I  A P+LA S   + P
Sbjct: 8   DSAETRAAELRARILDADHAYYVLDRPVLADAEYDRLVRELAEIEAAHPELATS---DSP 64

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++ G  +    +V H  P LSL  I +  +L +F  R++R      D  + +  EPK+
Sbjct: 65  TQRVSGAPSERFERVVHREPMLSLGNIQSDGELDEFDARVHRLLGLAGDVQVGYVAEPKL 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI------PTIPRVLSLNIPEIIEVR 188
           DG  + + YE G+ V  + RGDG +GEDV+A +R +        +P  L+  +P  +EVR
Sbjct: 125 DGLAVELVYEGGRLVQGSTRGDGVNGEDVTANLRTVGRTRANRGVPERLAGEVPPRVEVR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH------ 241
           GEV + K  F A+N +++  G +P+ANPRNAA+G LR+L+      R L+F  +      
Sbjct: 185 GEVLLFKEHFEAMNRQILRAGDEPFANPRNAAAGSLRQLDWRVTARRPLSFIAYEALVPG 244

Query: 242 ---GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
              G  +      +   E L+ +   GF  N    +      + +Y + M   R  LPYD
Sbjct: 245 AEPGGARAGPWAWRTHAEKLEALARWGFETNAENERCEGIAAVKAYRDRMAERRFALPYD 304

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DG+V KVD+   +++LG  ++ PRW ++ K+  ++ +TR+  I   +GRTGILTPV   
Sbjct: 305 TDGVVVKVDDLDWRRRLGAASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGILTPVVDF 364

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + GA+++ ATLHNED ++            +D+  GD +LV+RAGEVIP+VV  + 
Sbjct: 365 EPVRLSGAMVSRATLHNEDEMRR-----------KDVLEGDWILVRRAGEVIPEVVMPLK 413

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R  + +PF+FP+ CPIC ++VVR+   K       +RCTG  AC AQ + RL HF  R
Sbjct: 414 ERRTGEERPFAFPAECPICGAKVVREEGEK------VYRCTGA-ACPAQLVGRLTHFAQR 466

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTST----TKIENILGFGD 532
            A +I+GLG +      +       ++  AD++       Q+  +     + +       
Sbjct: 467 RAMDIDGLGDKLALGLVER----GLVKDFADLYAVPFPAWQELFSRPRKEERDAKAELPQ 522

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            S  N+ D++ + +  +L R +F+LGI  VG   A +LA+++     F     + +    
Sbjct: 523 KSAQNMVDALERSKATTLRRLLFALGIPQVGEATAATLARHFGELARFMDASEDAL---- 578

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
                 + V  VG   A+ I  + + P+N   VE L             +       K +
Sbjct: 579 ------LAVRDVGPETAREIRAWTEEPQNRRVVERL-LAAGVRPAPETVDAGGPFAGKTV 631

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG L  + R  A+  + + G  VS  +SRKTD+++ G   GSKLEKAQ LGV+++ EE
Sbjct: 632 VLTGGLAALSRDDAKAEIERRGGKVSGSVSRKTDLVVAGAEAGSKLEKAQALGVRVVGEE 691

Query: 713 QFLFLLQQ 720
           +FL +L++
Sbjct: 692 EFLRMLEE 699


>gi|21223850|ref|NP_629629.1| NAD-dependent DNA ligase LigA [Streptomyces coelicolor A3(2)]
 gi|7674017|sp|Q9Z585|DNLJ1_STRCO RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|4467245|emb|CAB37570.1| putative DNA ligase [Streptomyces coelicolor A3(2)]
          Length = 735

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/741 (30%), Positives = 354/741 (47%), Gaps = 62/741 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR+  + L ++I  H   YY    P++ D+E+D L R  + +    P+L     P  
Sbjct: 17  PAEARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEELEERHPEL---RTPES 73

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  +N ++L  +  RI R   +       F  E K
Sbjct: 74  PTQKVAGAYATEFTAVQHPTRMLSLDNTFNDDELAAWFERIARELGE---QEYHFLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  + + YE+G+ V AA RGDG +GED++  +R I  IP  L    +P+++E+RGEVY
Sbjct: 131 VDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVPDLVEIRGEVY 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  +   G KP+AN RNAA+G LR+ +P    +R L+  VHG+G       
Sbjct: 191 FPMEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVHGIGTLEGYSG 250

Query: 252 KGQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +  +    ++  G P +   R  +   G+  +       R ++ ++IDG+V KVDE  
Sbjct: 251 LTRLSQAYDLLKAWGLPTSPHNRVVDGLDGVREFIAYYGENRHSVAHEIDGVVVKVDEIR 310

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  
Sbjct: 311 LQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEF 370

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN++ +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 371 ATLHNQEVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 419

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +         +     RC    AC AQ  ER+ +   R+  +IE  G   
Sbjct: 420 PAECPECGTPL-----KAMKEGDIDLRCPNARACPAQLRERVAYLAGRECLDIEHFGGVV 474

Query: 491 LDFFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTK----IE 525
                   +P+   +    D+F L                    +R  +T   K      
Sbjct: 475 AAALTGPLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKIATVFA 534

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   L   I + +   L RFI  L IR+VG   A++LA+ + S     Q   
Sbjct: 535 NKEGEPKKNTLALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQATE 594

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643
             +A              VG  IA A+ E++    +   V        P   R   E   
Sbjct: 595 EELAST----------DGVGGAIATAVKEWFAVDWHREIVRKWKAAGVPLEDRSTGEDEG 644

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q
Sbjct: 645 PRPLEGLTVVVTGTLENFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 704

Query: 704 LGVKIMNEEQFLFLLQQYNTT 724
           L V ++NE+ F  LL+Q    
Sbjct: 705 LKVPVLNEDGFAVLLEQGPEA 725


>gi|307709253|ref|ZP_07645711.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564]
 gi|307619836|gb|EFN98954.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564]
          Length = 648

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/699 (30%), Positives = 358/699 (51%), Gaps = 53/699 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++GG
Sbjct: 1   MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELESAYPDQVLA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  I+
Sbjct: 58  KVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRK-----EVAHPTYICELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F  
Sbjct: 113 LTYEKGILVAGATRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++L+
Sbjct: 171 VNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKVLK 228

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGF VN     A     I  +  E+   R +LPYDIDG+V KV++ + Q++LG   
Sbjct: 229 HLEQLGFVVNPKRILAENIDEIWHFIQEVGEERDSLPYDIDGVVIKVNDLAGQEELGFTV 288

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI
Sbjct: 289 KAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI 348

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
                        +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S
Sbjct: 349 -----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSCDS 396

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +  
Sbjct: 397 GLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAAN- 448

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F LGI
Sbjct: 449 ---LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGLGI 499

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVG + ++ L +++ S +N AQ           D   +  +  +G +IA+++  ++   
Sbjct: 500 RHVGNKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFATE 549

Query: 620 RNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            +   +       V+          ++ +    +V TG L++++R +A+  +  LGA V+
Sbjct: 550 GSEILLRELKEAGVNLDYKGQTVVANAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVT 609

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 610 GSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 648


>gi|33241290|ref|NP_876232.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|81663882|sp|Q7V9J2|DNLJ_PROMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33238820|gb|AAQ00885.1| NAD-dependent DNA ligase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 685

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/725 (28%), Positives = 361/725 (49%), Gaps = 60/725 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     K +S L   ++  +  YY    P+I D+ +D L R    +   +P L     P
Sbjct: 1   MAETNHSKRISELRSLLNKANHAYYILDSPLIEDAVFDRLYRELIELEKQYPSLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +       + H IP  SL+  +N ++L  + +R+ +  +           E
Sbjct: 58  DSPSQRLGNKPATKFESIKHRIPLQSLDNAFNFDELNYWHSRMQKHLKSHS----AMVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
            KIDG  + + Y  G     A RGDG  GE+++A ++ I +IP  L L N P  +E+RGE
Sbjct: 114 LKIDGNALALSYVNGVLTRGATRGDGAEGEEITANVKTIVSIPLSLHLQNPPAWVEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL------ 243
            +I    F++LN E +   ++ +ANPRNA SG LR+L+   +  R+L+FF + +      
Sbjct: 174 AFIPNKVFISLNKERLKEEKQLFANPRNACSGTLRQLDSRIVASRHLDFFAYTIHLPDDW 233

Query: 244 --GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+T     KGQ+E L  ++  GF VN   +  +    +  +  + +  R  LPY  DG
Sbjct: 234 IPGETDPKKPKGQWEALLWLKAAGFRVNPNAKLISQPDQVEKFCIDWEKRRHQLPYTTDG 293

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K+D+F LQK LG   ++PRW I+ K+  ++A T+L  +  Q GRTG +TPVA   P+
Sbjct: 294 IVIKIDDFKLQKTLGITQKAPRWAIALKYPAEEAPTQLNKLIFQTGRTGTVTPVAEFNPI 353

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG L++ ATLHN + +  L           DI  GD +++++AGE+IP+V+ +I   R
Sbjct: 354 PLGGTLVSKATLHNANRLSEL-----------DIHEGDTIVIRKAGEIIPEVIRVIKELR 402

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             +A+    P  CP C S+++++         AA +C     C A     L+H+VS+ A 
Sbjct: 403 PNNAKKLVLPEKCPECNSKLLKETGE------AATKCLNN-DCPAILRGVLRHWVSKGAM 455

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+G G + ++   K +     I+  A I+ L+ +        EN+   G  S   L   
Sbjct: 456 NIDGFGTKLVEQLVKRKI----IKSIAGIYELKEKNL------ENLERMGTKSAEKLLIE 505

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           IN  +     + ++ LGI H+G   A+++A+ + S    A               S+  +
Sbjct: 506 INNSKKQPWHKQLYGLGILHIGEANAKAIAEVFPSISLLADA-------AIASPESISNI 558

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--------EIENKKLV 653
             +G  I +++ +++    N   ++ L          +E+            +   K  V
Sbjct: 559 YGIGSEITESLHKWFNCSINQNLIKELKDLGIALERVNEEGAIDNILMQEKLQFSGKTFV 618

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGT+  + R   +E + + G  V++ +S KT+ ++ G+ PG+KL+KA++LG+K++NE++
Sbjct: 619 ITGTMPSLSRANLEELIEREGGKVNSSVSSKTNYLVAGEKPGNKLKKAKELGIKVINEQE 678

Query: 714 FLFLL 718
            + L+
Sbjct: 679 LMTLI 683


>gi|55379625|ref|YP_137475.1| NAD-dependent DNA ligase LigA [Haloarcula marismortui ATCC 43049]
 gi|74516349|sp|Q5UY84|DNLJ_HALMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|55232350|gb|AAV47769.1| DNA ligase [Haloarcula marismortui ATCC 43049]
          Length = 691

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/720 (33%), Positives = 365/720 (50%), Gaps = 51/720 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
              +E +  E AR++   L + + YHD  YY  + P+I D  YDAL  R   +  AF   
Sbjct: 20  FESVEDVDAETAREQADQLREALRYHDYRYYVENDPVIGDRAYDALFSRLQRLESAF--- 76

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              +    P  ++GGE    L  V H     S+++     D+R+F +R+        D  
Sbjct: 77  -NLDTDGSPTQRVGGEPLDELPDVEHVARMGSIDQGGEEADVREFDSRVRNGL----DGD 131

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  EPK DG  + I YE G +  AA RGDG  GEDV+  +R I ++P+ L  + P+ +
Sbjct: 132 VQYFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRTISSVPQRLRGDYPDFL 191

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
            VRGEVYI ++ F   N E +  G  P+ANPRNAA+G LR+L+P+    R L+ F  G+ 
Sbjct: 192 AVRGEVYIPRDAFTTFNRERVERGEDPFANPRNAAAGTLRQLDPSVTAERPLSIFFFGVL 251

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             S +  +   E+ ++    G  V +     +     + Y NE +  R  L Y+IDG+V 
Sbjct: 252 DAS-VDFESHSELHERFPEWGLRVCDRTAVVDDIDAAIDYRNEQQQARDDLDYEIDGVVI 310

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+      LG  AR+PRW  ++KF  ++  T + DI +Q+GRTG LTPVA ++PV +G
Sbjct: 311 KVDDMDACDDLGSTARAPRWAFAYKFPARKEETTVRDIVVQVGRTGRLTPVALMDPVEVG 370

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+LHN   I  L            + VGDRV +KRAG+VIP VV+++ ++    
Sbjct: 371 GVTVSRASLHNPSLIADL-----------GVDVGDRVRIKRAGDVIPDVVEVLDDDGDGH 419

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              F FP  CP C S V  D             CTGGL C AQ+   ++H+ SRDA +IE
Sbjct: 420 ---FEFPETCPACDSPVEHD--------GPMAFCTGGLTCPAQRERSVEHYASRDALDIE 468

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G++ +         A  +  PAD++ L     T         G+G+ S  NL D ++ 
Sbjct: 469 GVGEKAVQQLLD----AGLVSDPADLYDLTVEDLTGLE------GWGETSARNLVDGMDS 518

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R   L  F+ +LGI  VG   AR+LA+ + +++        + A +  D  +   VP V
Sbjct: 519 AREPPLADFLVALGIPEVGTVTARNLAQEFGTFEAI------LDAADEGDTDAFEAVPDV 572

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G  +A++IVEF++   N   ++ LL  V P            ++ +  VFTG+L    R 
Sbjct: 573 GQTVARSIVEFFEGEGNRAVIDRLLDHVEPQAAEETD--GDALDGQTFVFTGSLDGYTRG 630

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +AQE V +     ++ +S  TD +++GDNPG  K + A    V+ + E++F  LL     
Sbjct: 631 EAQELVERNDGSATSSVSGNTDYLVLGDNPGQRKQDDAAAHDVETLTEDEFEELLDDAGV 690


>gi|240145659|ref|ZP_04744260.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82]
 gi|257202247|gb|EEV00532.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82]
          Length = 671

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/710 (29%), Positives = 361/710 (50%), Gaps = 50/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+   ++  L  +I+YH D YY    P I D E+D L ++   +    P+L      
Sbjct: 1   MTPEE---QIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTK--- 54

Query: 72  NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P   +GG     +   V H++P LSL+ +++ E++  F+ ++         +   F +
Sbjct: 55  DSPTQHVGGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMKEQL-----DDPEFVV 109

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           E KIDG  + +RYE G    A  RGDG   GEDV+A  + I  + + L    PE +E+RG
Sbjct: 110 EYKIDGLSMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLKDK-PEYLEIRG 168

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY+   DF  +N++   +G+K +ANPRN A+G LR+L+      R L+ FV  + +   
Sbjct: 169 EVYMKNEDFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRG 228

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      +  + ++  G P+    +   T   + +    +   R  L YDIDG V K++ 
Sbjct: 229 MDIMTHTQGYEFLKRQGIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINR 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           +S ++ LG  ++ P+W I++K+  ++  T+LLDI++ +GRTG +TP A  EPV + G  +
Sbjct: 289 YSDRELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSV 348

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+D+I  L           D+ +GD ++V ++GE+IPKV ++   +R    + F
Sbjct: 349 SRATLHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKEVRKEKRPDGWKRF 397

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C ++  R+ +       A  +CT    C AQ    + +FV RDA +I+G G 
Sbjct: 398 MIPDVCPVCGAKTEREKD------TADIKCT-SPNCPAQLERHIINFVGRDAMDIKGFGT 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++   +       I+  ADIF L+  ++    +   I+G  + +   L ++I K +  
Sbjct: 451 VYIEELVR----LGYIKDIADIFELKDHREELIEQ--GIIG-KEKNTDKLLETIEKAKEN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
                +   GI +VG   A+++ K + S          I+   + D  +L+ V  VG++ 
Sbjct: 504 DAYMLLTGFGIPNVGKAAAKTIMKRFPS----------ILDLEDADRDALMEVDDVGEVS 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A  I  F+ + +N   +  L            + + S +  K +V TGTL  + R +A E
Sbjct: 554 ADCIFRFFHDEKNKEMIARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAE 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            V + G  VS  +S+KTD ++ G++ GSKL KAQ+LG+ ++ E +   LL
Sbjct: 614 LVEKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663


>gi|256390514|ref|YP_003112078.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928]
 gi|256356740|gb|ACU70237.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928]
          Length = 723

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/746 (29%), Positives = 346/746 (46%), Gaps = 63/746 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++  +     ++ ++L +EI      YY    P I D+++D   R+ +AI  A P+L   
Sbjct: 1   MDETTAATPAQQHAALAEEIENARYRYYVLDAPTISDADFDVKLRQLEAIEDANPEL--- 57

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  K+ G        V H    LSL+  +  E+L+ +  RI +            
Sbjct: 58  RTPDSPTQKVAGAYETEFTSVPHLERMLSLDNAFTAEELQTWADRIEKDLGALP----EL 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEI 184
             E K+DG  I + YEKGK   A  RGDG +GED++   + I TIP+ L+      +PE+
Sbjct: 114 LCELKVDGLAINLLYEKGKLTRALTRGDGRTGEDITPNAKTIQTIPQTLTGTDEFPVPEL 173

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +EVRGEVY +   F   N++++A   + YAN RNAA+G LR+ +P     R L+  VHG+
Sbjct: 174 VEVRGEVYFAVQAFDEWNEKILAETGRSYANARNAAAGSLRQKDPRVTAQRPLSMVVHGI 233

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G         Q    + +R  G P ++ V+   T   +  Y +     R  + ++IDG+V
Sbjct: 234 GARKGFTPTSQSHSYEALRAWGLPTSDRVKVVKTLKDVQKYIDYYNKHRHDVEHEIDGVV 293

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD   +Q +LG  +R+PRW I+ K+  ++ +T+LLDI +Q+GRTG +TP A +EPV +
Sbjct: 294 VKVDALPIQGRLGSTSRAPRWAIAFKYPPEEVTTKLLDIRVQVGRTGRVTPYAVMEPVTV 353

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ + NATLHN+  +             + + +GD V++++AG+VIP++V  + + R  
Sbjct: 354 AGSTVQNATLHNQAIV-----------VKKGLLIGDTVVLRKAGDVIPEIVGAVQDLRDG 402

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + F  P  CP C +++         +     RC     C  Q  ER+    SR+A +I
Sbjct: 403 SEREFVMPENCPDCGTKL-----APQKEGDIDLRCPNSQFCLGQIRERIDFMGSRNALDI 457

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY---- 539
           E LG +      +       +    D+ +L+         +++  G              
Sbjct: 458 EALGYESAVALTQPAAGTAPVHDEGDLLSLKLEDLADLKMLQSKRGADAKPGETELVPYF 517

Query: 540 ---------------------DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
                                     + +  L RF+ SL IRHVG   AR LA+ + S+ 
Sbjct: 518 FTKGTPKKPSVPTATTELLLQQLELVKTDRPLWRFLVSLSIRHVGPTAARVLAREFPSFD 577

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
             A      +   N           +G  IA AIVE++    +   +          +  
Sbjct: 578 ALANATEEDLKAAN----------GIGPTIATAIVEWFAVDWHRAIIGKWQAAGVVPVVE 627

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            +      +E   +V TGTL    R  A E +T  GA VS  +S+KT  ++VGDNPG+K 
Sbjct: 628 SQPEGPRPLEGLSVVVTGTLAGFTRDGAAEELTSRGAKVSGSVSKKTSFVVVGDNPGTKY 687

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +KA  LGVK+++EE F  LL      
Sbjct: 688 DKALSLGVKVLDEEGFKVLLGDGPQA 713


>gi|21231024|ref|NP_636941.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768971|ref|YP_243733.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992085|ref|YP_001904095.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|81305065|sp|Q4UTB0|DNLJ_XANC8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81794799|sp|Q8PAB5|DNLJ_XANCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254782312|sp|B0RUY2|DNLJ_XANCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21112648|gb|AAM40865.1| DNA ligase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66574303|gb|AAY49713.1| DNA ligase [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733845|emb|CAP52051.1| DNA ligase (NAD(+)) [Xanthomonas campestris pv. campestris]
          Length = 833

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/849 (29%), Positives = 401/849 (47%), Gaps = 164/849 (19%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + + +L Q I   +  Y+   +P I D EYD L R  +A+  A P+LA +   + P  +
Sbjct: 8   AQRIDALRQRIEDANYRYHVLDEPQIADVEYDRLLRELEALEAAHPELATA---DSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G        +V H +P LSL   ++ E++ +F+ RI    ++K      F  EPK+DG 
Sbjct: 65  VGYLAASRFAEVRHVLPMLSLGNAFSDEEVAEFVRRISERLERK---QPVFCAEPKLDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            I++RYE+G+FV  A RGDG +GEDVSA +R +  IP  L     PE++EVRGEVY+ + 
Sbjct: 122 AISLRYEQGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGTGWPEVLEVRGEVYMPRA 181

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK-TSEIFAKGQ 254
            F A N +M   G K  ANPRN A+G LR+L+      R L+FF +G+G+          
Sbjct: 182 AFEAYNAQMRLQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVADGALPPTH 241

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             ML ++R  GFPV+  V       G+++YY  +   R  LP+DIDG+VYK+D+ + Q++
Sbjct: 242 STMLAQLREWGFPVSQLVEVVQGSEGLLTYYRRIGEARDGLPFDIDGVVYKLDDLAGQRE 301

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLH
Sbjct: 302 MGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVVVTNATLH 361

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L           D+RVGD V+V+RAG+VIP+V  ++  +R      +  P+ C
Sbjct: 362 NADQIARL-----------DVRVGDTVIVRRAGDVIPEVAGVVAEQRPAGTHAWQMPTQC 410

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++  
Sbjct: 411 PVCGSEIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVL 464

Query: 495 FKSE-------------DPAFSIRIP-----ADIFTLQRRQQTSTTKIENIL-------- 528
             S              D    +R+         F  + R+  +      +         
Sbjct: 465 VDSGVVQGVADLYLLNVDQLLQLRLISTADSPHAFLREAREHLAAGAYAQVEQTMVGIGV 524

Query: 529 -----------------------------GFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
                                                NL ++I   R+ +LERF+F+LGI
Sbjct: 525 DLAGVQPAPQTWQADLLRAGLPAFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGI 584

Query: 560 RHVGAEIARSLAK-------------------------------YYLSYQNFAQEINNII 588
            HVG   A++L+                                ++       Q I++++
Sbjct: 585 EHVGESTAKALSAWFGELDVIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLL 644

Query: 589 ------------------AHNNDDWLSLIRVPLVGDIIAQ-------------------- 610
                             A +    L  + +P V  + AQ                    
Sbjct: 645 QRGVRIGDAHPPSPKLRGALSFAVLLEDLDIPKVTPVRAQQLAAATASFDALIASEADPL 704

Query: 611 -----------AIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTG 656
                      ++ ++   P N     A    +  +   + + +   +  ++ + +V TG
Sbjct: 705 LQAGVPAPVIASLQQWLARPENAALATAAQRAMDALLAQLPQADAVQAGPLDGQTVVITG 764

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L 
Sbjct: 765 TLAALTRDAAKQRLESLGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLA 824

Query: 717 LLQQYNTTL 725
            L ++   +
Sbjct: 825 FLSEHGQAV 833


>gi|303239321|ref|ZP_07325849.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2]
 gi|302593107|gb|EFL62827.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2]
          Length = 663

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/706 (31%), Positives = 353/706 (50%), Gaps = 46/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L + I YH+D YY      I D EYD L      +    P+LA +   N P 
Sbjct: 2   DIKKRIEELRKTIEYHNDRYYNQDDAEISDYEYDQLSLELRKLEQEHPELALT---NSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+GG     L KV H +P +SL+ +++ E++  F+ ++ +           F +E KID
Sbjct: 59  QKVGGTAKRELRKVQHDVPVISLQDVFSKEEVYSFVNKMIQEL-----GDPTFVVERKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + +RY  G  V    RGDG  GE V   +  I +IPR +   +P  +EVRGEVY+S 
Sbjct: 114 GLSVVLRYNDGNLVEGITRGDGLVGESVYENLLEIQSIPRTIPTKLP-YLEVRGEVYMSA 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
             F   N +    G K Y   RN A+G LR+L+P  +  R L+ +V  L           
Sbjct: 173 EAFEKANRKQEETGGKIYQTARNLAAGSLRQLDPGIVRERNLDIYVFNLEICQGKDFSSH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +   GFP++       T   +    +++   R  L + IDG V KVD    +K+
Sbjct: 233 SESLNWLSTQGFPISPEFMICKTADEVWECISKIGETRWQLSFGIDGAVVKVDSLDDRKR 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++ PRW ++ K+  +Q  T + DI +Q+GRTG LTP+A L+PV I G  ++ ATLH
Sbjct: 293 LGITSKVPRWAVAFKYPPEQKETVVEDIKVQVGRTGRLTPLAILKPVKIAGTTVSRATLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+DYI             +DI++GD V++++AG++IP+V+  I  +R   A+ +  P  C
Sbjct: 353 NQDYIDS-----------KDIQIGDTVIIQKAGDIIPEVLKSIPEKRPDTAKRYIIPDKC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C +  +R+ +          RCTG  AC AQ +  + +F S+DA NIEG G   ++  
Sbjct: 402 PMCGAPALREEDGVE------IRCTGS-ACFAQAIRGVIYFASKDAMNIEGFGPSSVEAL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    I+  ADI+ L+  +    TK    +   + S+ NL  +I K ++  ++R I
Sbjct: 455 MSE----GYIKDVADIYLLKDSRDELITKG---IVGKEKSIDNLLKAIEKSKDNDIDRLI 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
              GIR+VG + AR LA  +   ++            N  +  LI +P  GDI+ + I+E
Sbjct: 508 TGFGIRNVGKQTARVLAANFQDIESL----------ENATYDQLIVLPDFGDIMVKDILE 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+    N+  +  L +     + +            K  V TGTL  + R +A E +   
Sbjct: 558 FFSKSENLLLISKLKQVGINMLSKASVNKKDDRFSGKTFVLTGTLPSMTREEATELIQMH 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  VS  +S++T  ++ G++ GSKL KAQ+LGV+++ EE+   +L 
Sbjct: 618 GGKVSGSVSKRTSYVLAGEDAGSKLAKAQELGVQVIGEEELKNMLN 663


>gi|148986045|ref|ZP_01819066.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71]
 gi|147921879|gb|EDK73005.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71]
 gi|301800082|emb|CBW32679.1| DNA ligase [Streptococcus pneumoniae OXC141]
          Length = 652

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 357/701 (50%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + 
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKG 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKYLEQLGFVVNPKRILAENIDKIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +Y+ S +N  Q           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|110597868|ref|ZP_01386151.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031]
 gi|110340593|gb|EAT59076.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031]
          Length = 674

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/710 (33%), Positives = 364/710 (51%), Gaps = 50/710 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A +E+  L +EI  H+  YYQ +KP I D ++D L  +  A+   FPDL     P+ P  
Sbjct: 7   ASEEILRLRREIERHNRLYYQEAKPEISDYDFDLLLEQLVALEQQFPDLV---TPDSPSQ 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG +      V H  P LSL   ++ E++ +F  R+ +    +         E K DG
Sbjct: 64  RVGGTITKEFTAVRHREPMLSLSNTYSPEEVEEFCNRLRKLLLLEGVQEQEMVAELKFDG 123

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-------IEVRG 189
             +T+ Y     V  A RGDG  G++++  ++ I TIP  L  ++          IEVRG
Sbjct: 124 VAVTLLYRDALLVQGATRGDGVQGDNITVNLKTIATIPLRLEGSLAGELQGEGREIEVRG 183

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           EVY+ K DF  LN+      R  +ANPRNA +G L+  +  ++ R    FV    K    
Sbjct: 184 EVYMPKLDFEHLNETRPEEDR--FANPRNATAGTLKLQDSAEVARRRLSFVAYYLKGLGD 241

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                +  L+ +  LGF      R     + I  +  E    R  LPY+ DG+V K+++ 
Sbjct: 242 ETASHFSRLKMLERLGFHTGGHYRLCREQNEINRFIEEWTERRWKLPYETDGVVLKLNDV 301

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            L  ++G  A+SPRW I++K+  +QA+T LLD+  Q+GR G +TPVA L+PV + G+ ++
Sbjct: 302 RLWDKIGATAKSPRWAIAYKYPAQQAATELLDVLFQVGRLGTITPVAELKPVLLAGSTVS 361

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            +TLHN D I+ L            + V DRV++++AGEVIPKV+ +++ ER  DA+P +
Sbjct: 362 RSTLHNFDEIERL-----------GLMVHDRVVIEKAGEVIPKVISVVLAERPVDAEPIA 410

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + + +  N        +  C     C AQ   RL HF SR+A +I+ LGK 
Sbjct: 411 VPVVCPECNTPLEKPENE------VSWYCPNEAECPAQIRGRLLHFASRNAMDIKTLGKA 464

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     +     +R   D++ LQ  Q       EN+   G  S  NL  ++ + R  S
Sbjct: 465 LVDQLVGMK----LVRDVGDLYLLQEPQL------ENLERMGRKSAQNLVRALAESREKS 514

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER +++LGIRHVG   AR L+  Y S     Q     ++           VP VG I+A
Sbjct: 515 YERLLYALGIRHVGRATARELSAAYPSLDLLRQASEEELS----------TVPDVGPIVA 564

Query: 610 QAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++IV+F+  P +    E L +  V  S     + V+   E   ++FTG L++  R KA E
Sbjct: 565 RSIVDFFAKPSSAALFETLREAGVQVSAAGKPEQVNRNFEGISVIFTGGLERYDRQKATE 624

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            V + G  V   +S+KT +++ G +PGSKLEKA +LGV+++ E++F  +L
Sbjct: 625 LVIERGGRVVGSVSKKTGLVVAGHDPGSKLEKALKLGVRVVTEDEFDAML 674


>gi|227488027|ref|ZP_03918343.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091889|gb|EEI27201.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 679

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/713 (29%), Positives = 349/713 (48%), Gaps = 50/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
                L  ++ YH D YY    P I D+E+D L  +   +    P L     P+ P  ++
Sbjct: 7   ARWEELAAQVRYHRDKYYN-GTPEITDAEFDVLFSQLQQLEAEHPGL---RAPDSPTLEV 62

Query: 79  GGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           G           + H     SL+ +++ ++L +++ R           S  +++E KIDG
Sbjct: 63  GAPSPEGSSFENIAHLERMYSLDNVFSKDELEQWLIRT---------PSDTYSVELKIDG 113

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVY 192
             I + Y  G+   AA RGDG  GE+++A  R I  IP  L  N    IP ++EVRGEVY
Sbjct: 114 VSIDLVYRDGELATAATRGDGTVGEEITANARMITGIPDHLQENDAFPIPSVLEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           I+ +DF  +N++     +KP+ANPRNAA+G +R+ +P  +  R L    HG+G    I  
Sbjct: 174 IAIDDFPLVNEQRQLENKKPFANPRNAAAGSMRQKDPQAVKKRKLTLVCHGIGAAEGISV 233

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q E  + +   G PV+      ++   +     +    R    +++DG+V KVD    
Sbjct: 234 ESQTEAYKALAAFGLPVSEYTTVVHSHEEVHEMVEKWADHRHDAVFEMDGMVVKVDNREQ 293

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  +R+PRW I++K+  ++A T+L+D+ + +GRTG +TP A +EPV + G+ +  A
Sbjct: 294 QRALGATSRAPRWAIAYKYPPEEAVTKLIDVRVGVGRTGRVTPFAIMEPVEVAGSTVEMA 353

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+  +             + + +GD+V++++AGEVIP+V+  + + R    +PF FP
Sbjct: 354 TLHNQSEVNR-----------KGVLIGDQVVIRKAGEVIPEVLGPVADLRDGTERPFVFP 402

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C +++         +  A  RC    +C  Q   RL++   R  F+IE LG++  
Sbjct: 403 TLCPQCGTKL-----APAKEEDADWRCPNTRSCPGQLAGRLEYIAGRGVFDIEALGEKAA 457

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               ++      +   AD+FTL       +    N  G  + +   L   +  ++   L 
Sbjct: 458 ADLVRT----GILTDEADLFTLTEDDLLDSRVYTNSKGAVNAAGKKLIAGLKTQKETDLW 513

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I  L IRHVG   AR+LA+ + S     +     +A              VG +IA +
Sbjct: 514 RVITGLSIRHVGPTAARALAREFGSMDAIRKATEEELAAT----------EGVGGVIAAS 563

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IV+++    +   V+A  +          +     +E   +V TG+L+   R  A+E + 
Sbjct: 564 IVDWFSVDWHRAIVDAWAEAGVTMEDERGEAKEQTLEGLTIVVTGSLENYTRDGAKEAII 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           + G   S  +S+KTD ++VG N GSK  KA++LG  I+NE+QF  LL     T
Sbjct: 624 ERGGKASGSVSKKTDYVVVGANAGSKAAKAEELGRPIINEQQFEELLATGAVT 676


>gi|241896133|ref|ZP_04783429.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313]
 gi|241870647|gb|EER74398.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313]
          Length = 675

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/716 (31%), Positives = 377/716 (52%), Gaps = 52/716 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +  +      +A +++  L+ ++      YY+   P + D+EYD + +R   +  AFP+L
Sbjct: 1   MTEVALTDPTEAAQQMEKLQLQLQQWAKEYYENDSPTVEDAEYDKVYKRLQELEAAFPEL 60

Query: 66  ARSEDPNGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
                P+    ++GG +    L KV H +P LSL  ++++++L  ++    + +      
Sbjct: 61  VN---PDSITQQVGGHKTKSELPKVEHDVPMLSLGDVFSMDELTNWMVNTQKSF----TE 113

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + +  E KIDG  I++ Y++G  V A+ RGDG+ GEDV++ I+ +  IP+ LS   P  
Sbjct: 114 ELIYNAELKIDGLAISLVYQEGLLVQASTRGDGNVGEDVTSNIKYVDDIPKKLSE--PLS 171

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           IEVRGE+Y+ K  F++LN+     G   +ANPRNAA+G LR+L+P     R L+ F++ +
Sbjct: 172 IEVRGEIYMPKEAFVSLNESRERDGLPTFANPRNAAAGSLRQLDPLITKKRKLSAFMYQV 231

Query: 244 GKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                 +  K Q E+L ++  LG P NN      +   + +Y     + R +L Y IDG+
Sbjct: 232 VDAPRSLNIKTQSELLIRLSQLGLPANNTNAVVTSTTDVENYIVSQTNHRDSLSYGIDGI 291

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+  S  ++LG   + P+W I++KF  ++A T +  I+  +GRTG +TP A + PV 
Sbjct: 292 VIKVNNLSFHEELGNTVKVPKWAIAYKFPPEEAETIIQGIEWTVGRTGAVTPTAVMNPVQ 351

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A+LHN DY++            +DIR+GD V + +AG++IP+V  +I+  R 
Sbjct: 352 LAGTTVSRASLHNADYLQA-----------KDIRIGDTVTLHKAGDIIPEVGKVIIERRP 400

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D+  +  P  CP C   +V            A RC    AC AQ  E L HF SR+A N
Sbjct: 401 EDSVLYELPKECPACHQSLVHVDGE------VALRCINP-ACPAQVQESLTHFASRNAMN 453

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG + +            I    D++ LQ     +  K      FGD +  NL ++I
Sbjct: 454 IDGLGPKIISQLLAH----GLITKVTDLYRLQYDDLINLDK------FGDTAANNLLNAI 503

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N  +N S+ER +F LGIR+VGA+ A+++A  + + +  A+   + IA          ++P
Sbjct: 504 NLSKNNSVERLLFGLGIRNVGAKAAKTIATKFGNLKAIAEATADDIA----------KLP 553

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE-IENKKLVFTGTLQK 660
            +G  I  ++ +++   +    +   ++ +V+         + +     KK+V TG+L  
Sbjct: 554 GMGLTIGDSVAQYFATEQAQQLLNDFIELKVNTEFTSQTAVIDNPMFSGKKIVLTGSLSL 613

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             R  A  ++   GA+V++ +S+KTD++I G+N GSKL KAQ L ++I +E+Q   
Sbjct: 614 FSRRDASAWLESQGAIVASSVSKKTDLLIAGENAGSKLTKAQDLNIEIWSEKQLRD 669


>gi|222152820|ref|YP_002561997.1| NAD-dependent DNA ligase LigA [Streptococcus uberis 0140J]
 gi|254781430|sp|B9DRS2|DNLJ_STRU0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222113633|emb|CAR41520.1| DNA ligase [Streptococcus uberis 0140J]
          Length = 652

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/702 (31%), Positives = 363/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L   ++ +   YY    P + D EYD L      +   +P+  +    + P   
Sbjct: 2   EKRIRELTSLLNQYRQEYYTNDNPSVSDQEYDKLYHELIDLEKEYPEYIQK---DSPSQA 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+     K +     +  E KIDG 
Sbjct: 59  VGGLILSGFEKYQHPFPLYSLQDAFSKEELEAFDRRV-----KSEFPKAEYIAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G+ V  A RGDG  GE+++  I+ I  IP  L  +I   I VRGE Y+S++ 
Sbjct: 114 SISLSYESGRLVTGATRGDGSVGENITENIKKIKDIPHQLKDDI--TITVRGEAYMSRSS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256
           F  +N E    G   +ANPRNAA+G LR+L+ + + R  L  F++   + S   A+ Q +
Sbjct: 172 FQKINLERQENGETEFANPRNAAAGTLRQLDTSIVARRELASFLY--QEASPSQAQNQED 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +  LGF VN     +++   I S+  +++  R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLENLEALGFSVNKKRLISSSMEDIWSFITQVEDERDNLSYDIDGIVIKVNNLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  IGRTG++TP A L P+ + G  ++ ATLHN 
Sbjct: 290 FTIKAPRWAIAYKFPAEEKEAEILSVDWTIGRTGVVTPTANLTPIQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++  +R     P   P  CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVDTKRDQQL-PMPIPKVCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS +V            A RC   L C +     L+HF SR+A NI GLG   ++  F 
Sbjct: 398 CQSDLVHLEAE------VALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAIVEKLFS 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I   ADI+ L      S   +  + G  + S   L D+I   ++ S ++ +F 
Sbjct: 451 AQ----LIHDVADIYQL------SLDSLLTLEGIKEKSAQKLLDAIQSSKSNSADKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ +R L + + S +N  +  +  IA          ++  +G +IA +I  ++
Sbjct: 501 LGIRHVGAKASRLLLETFGSVENLMKADDQSIA----------QIDGLGHVIANSIKNYF 550

Query: 617 QNPRNICAV-EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   + E   K V+      + + S+++    +V TG L+++ R +A+E +  +GA
Sbjct: 551 AKEEAKQLIFELKDKGVNLDYLGKKVDTSAQLFGLTVVLTGKLEEMTRQEAKEKLENMGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD++I G + GSKL+KA+ LG+ + +E   L L
Sbjct: 611 KVTGSVSKKTDLVIAGSDAGSKLDKARSLGIDVKDENWLLQL 652


>gi|169834268|ref|YP_001694538.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|254781426|sp|B1IBQ3|DNLJ_STRPI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168996770|gb|ACA37382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Hungary19A-6]
          Length = 652

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/701 (30%), Positives = 357/701 (50%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + 
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKG 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++   Q++LG 
Sbjct: 231 LKYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLVSQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY- 616
           GIRHVG++ ++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFA 551

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                I   E     V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 AEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|169335238|ref|ZP_02862431.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257976|gb|EDS71942.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM
           17244]
          Length = 659

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/706 (33%), Positives = 381/706 (53%), Gaps = 48/706 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +KE+  L +E+  H+  YY+   P I D +YD L R+   +   +P   +      
Sbjct: 1   MEDIKKEIEKLTEELLEHNRKYYEEDNPSISDYDYDMLIRKLTKLEEEYPQYKKEY---S 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P +++GG+   +  KV H    LSL   ++ ++L +F  R+ +     +  +  +TLE K
Sbjct: 58  PTDRVGGKALDAFDKVKHEYKQLSLSNAFSYDELLEFDQRVKK-----EIENPVYTLENK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + Y+KG     A RGDG  GEDV+  ++ I +IP  L LN    + VRGEV I
Sbjct: 113 FDGLTIVLTYKKGLLSVGATRGDGEVGEDVTLNVKTIKSIP--LKLNEEVDLTVRGEVLI 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K++F  +N E    G   +ANPRN A+G +R+L+      R L+ F+  L         
Sbjct: 171 YKDNFEKINKEREKEGLSLFANPRNMAAGSIRQLDSKIAAKRNLDCFIFNLEHIEGKTLS 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E L  ++ LGF V+   +  +    I     + +  R ++PY+IDG V K+++   +
Sbjct: 231 SHSESLDYLKSLGFKVSE-YKIFDNMKDIFDELIKKEDSRKSMPYEIDGAVIKLNDLEER 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   ++PRW I++KF+E +  T+L DI + +GRTG LTPVA LE V I G+ ++ AT
Sbjct: 290 ELLGSTNKNPRWAIAYKFSETKVKTKLTDIIVNVGRTGTLTPVAILEGVRIDGSFVSRAT 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNEDYI              DIR+GD V+VK+AGE+IP+V+  +  +R  D + F  P 
Sbjct: 350 LHNEDYIND-----------NDIRIGDNVIVKKAGEIIPQVISSVKEDRKGDEKLFEMPK 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C   VVR       +  +A +C   + C A+    + HF SR+A NI+ LG++ L+
Sbjct: 399 NCPVCGKEVVRQ------EGNSAVKCIN-VDCPAKISREIIHFASREAMNIDTLGERVLE 451

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              + +     I+  +DI+ L+ +++     IE++   G+ SV+N+ ++I K +  SLE 
Sbjct: 452 TLIEKD----LIQDVSDIYKLEDKKK----DIESLEKMGEKSVSNMLNAIEKSKENSLED 503

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+L I  VG + A+ LAK + +  N            N  +  ++ +  +GD +A  I
Sbjct: 504 LLFALSINLVGKQGAKLLAKRFKTMDNL----------INASYEDIVDINEIGDKMATEI 553

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + F++NP  +  +E L          +E+N   + E    V TGTL K +R +A++ +  
Sbjct: 554 INFFKNPSKLALIERLKSVGVNMEYINEENEELKFEGMTFVLTGTLSKYKRSEAKKIIEN 613

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G  VS+ +S+KT  ++ G+N GSK EKA++LGVKI++E++F  ++
Sbjct: 614 YGGKVSSSVSKKTTYVLAGENAGSKEEKAKELGVKIISEDEFENMI 659


>gi|312865342|ref|ZP_07725570.1| DNA ligase (NAD+) [Streptococcus downei F0415]
 gi|311099453|gb|EFQ57669.1| DNA ligase (NAD+) [Streptococcus downei F0415]
          Length = 673

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/700 (30%), Positives = 352/700 (50%), Gaps = 53/700 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L  +++ +   YY    P + D++YD L R    +  A P+L ++   + P +++G
Sbjct: 25  RMKELVDQLNRYAKEYYTQDNPSVSDAQYDKLYRELVDLEKAHPELVQA---DSPTHRVG 81

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G +     K TH  P  SL+  ++ E+L  F  R+       +  S  +  E KIDG  I
Sbjct: 82  GLVLDGFEKYTHEYPLFSLQDAFSREELDDFDRRVKA-----EFPSASYLAELKIDGLSI 136

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y  G+    A RGDG  GE+++  ++ I  IP  L+    + I VRGE Y+ +  F 
Sbjct: 137 SLTYVNGQLQIGATRGDGTVGENITENLKRIQDIPLSLAGG--QTITVRGEAYLPRASFE 194

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
           A+N +    G+  +ANPRNAA+G LR+L+   +  R L  F++   +  E     Q  +L
Sbjct: 195 AINAKRREEGQDEFANPRNAAAGTLRQLDTAVVAQRKLATFIY--QEAGETDFPTQEAVL 252

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +    +GF VN      ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG  
Sbjct: 253 EGFADMGFVVNPRRIVTSSMDEIWDFIQAVQADRDNLAYDIDGIVIKVNSLAMQEELGFT 312

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++PRW I++KF  ++   +++ +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 313 VKAPRWAIAYKFPAEEKEAKIISVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDY 372

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR+ D V+V +AG++IP V+++++ +R     P   P  CP C 
Sbjct: 373 I-----------ADKDIRLDDTVVVYKAGDIIPAVLNVVMAKRQKQL-PMEIPETCPSCY 420

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           SR+V   +        A RC     C AQ  E+L HF SRDA NI GLG   ++  ++  
Sbjct: 421 SRLVHYEDE------VALRCVNPR-CPAQLKEKLIHFASRDAMNITGLGPSLIEKVYQ-- 471

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  I+  AD++ L      +        G  + S   LY +I   +  S E+ +F LG
Sbjct: 472 --AGLIQDVADLYQLTVADLLTLE------GVKEKSAAKLYQAIQASKENSAEKLLFGLG 523

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVGA+ ++ L + + S           IA           +  +G +IAQ++ +++  
Sbjct: 524 IRHVGAKASKQLLEKFGSLGQLMSAKFEAIA----------DIDGLGAVIAQSLQDYFAT 573

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                 +  L +         ++      +    +V TG L  + R +A+E +  LGA V
Sbjct: 574 DGAKQLMRELQEAGLNFDYLGKRVTEDAALSGMTVVLTGKLVSLTRSQAKEKLETLGAKV 633

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+ TD+++ G + GSKL KAQ+LG+ I +E+    L
Sbjct: 634 TGSVSKNTDLVVAGTDAGSKLTKAQELGITIQDEDWLANL 673


>gi|319939188|ref|ZP_08013551.1| DNA ligase [Streptococcus anginosus 1_2_62CV]
 gi|319811584|gb|EFW07860.1| DNA ligase [Streptococcus anginosus 1_2_62CV]
          Length = 652

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/702 (30%), Positives = 353/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ +   YY    P + DSEYD L      +   +P+  +   P+ P ++
Sbjct: 2   KDRMLELVKLLNQYAHEYYTTDNPSVSDSEYDKLYHELLDLEKQYPEFVQ---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     D   + +  E KIDG 
Sbjct: 59  VGGKVLEGFEKYQHQYPLYSLQDAFSREELDVFDARIRK-----DFPDVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  IP  L   +   + VRGE Y+ ++ 
Sbjct: 114 SISLMYENGILVAGATRGDGSVGENITENLKRVKDIPLKLPSEV--DMTVRGECYMPRSS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S   A  Q  
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAIVAKRNLATFLY--QEASPTSATSQEA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L ++   GF VN     A++      +  E+   R  LPYDIDG+V KV++  +Q++LG
Sbjct: 230 VLNQLSKNGFSVNERHILAHSMDEAWQFIEEINQEREQLPYDIDGVVIKVNDLVVQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR  D V+V +AG++IP V+ ++ ++R    +    P  CP 
Sbjct: 350 DYI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRQSKEK-LEIPKNCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC     C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CNSELIHFEDE------VALRCINPR-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFD 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     +   A I+ L  +          +  F + S   LY +I   +  S E+ +F 
Sbjct: 451 QQ----LVNDVAGIYRLTVKDLL------QLENFKEKSANKLYTAIQASKENSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ ++ L +++   +  A+     IA           +  +G +IA+++  ++
Sbjct: 501 LGIRHVGSKASQILLEHFHDLEQLAKAKREEIAA----------LDSLGMVIAESLSSYF 550

Query: 617 -QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q   +I   E     ++ +    +    + +    +V TG L+++ R +A++ +  LGA
Sbjct: 551 AQEGTHILLSELKEAGLNFTYLGEKVAADAALSGLTVVLTGKLERLNRSEAKKKLESLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KT +++ G + GSKL KAQ+LG+ I +E     L
Sbjct: 611 KVTNSVSKKTSLVVAGADAGSKLTKAQELGIIIRDEAWLESL 652


>gi|145220287|ref|YP_001130996.1| DNA ligase, NAD-dependent [Prosthecochloris vibrioformis DSM 265]
 gi|190359271|sp|A4SG85|DNLJ_PROVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145206451|gb|ABP37494.1| DNA ligase, NAD-dependent [Chlorobium phaeovibrioides DSM 265]
          Length = 674

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/713 (30%), Positives = 351/713 (49%), Gaps = 50/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I+  R E   L  +I  H+  YY  +KP + D ++D L  R   +    P+L     P+ 
Sbjct: 4   IDALRSEAERLRSDIERHNHLYYVEAKPELSDYDFDLLLDRLVQLEREHPELV---TPDS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +      V H  P LSL   ++I ++ +F+ R+ R  + +         E K
Sbjct: 61  PTQRVGGTITKEFPSVEHREPMLSLANTYSIGEVEEFVGRLNRLLEAEGAQGRDTVAELK 120

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-------NIPEIIE 186
            DG  +++ Y  G  +  A RGDG  G+D++  ++ +P+IP  L              +E
Sbjct: 121 FDGVAVSLLYRDGLLIRGATRGDGRRGDDITVNLKTVPSIPLRLGEFDGPFSAGEGREVE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           VRGEV + K DF ALND      R  +ANPRNA +G L+  +  ++ R   +FV      
Sbjct: 181 VRGEVLMRKEDFEALNDTRPEEDR--FANPRNATAGTLKLQDSREVARRSLWFVAYYVSG 238

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                    + L+ +   GF   N  R  +    I ++       R  LPY+ DG+V K+
Sbjct: 239 LHDEDTRHVDRLKLLETAGFSTGNQYRLCHGIEEIEAFMQFWDEGRRALPYETDGVVVKL 298

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++    + LG  ++SPRW I++K+   +A+T L DI  Q+GR G +TPVA LEPV+I G+
Sbjct: 299 NDVRQWRLLGATSKSPRWAIAYKYPASRATTLLRDIVFQVGRLGTITPVAELEPVHIAGS 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  +TLHN D ++ L            +  GDRV+++++GEVIPKV+ +++ ER P   
Sbjct: 359 TVARSTLHNFDEMRRL-----------GVMPGDRVVIEKSGEVIPKVISVLLEERPPGLS 407

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP C + +V+           +  C     C AQ   R+ HF SR+A +IE L
Sbjct: 408 AKELPTHCPDCGTPLVQPEGE------VSWYCPNEEGCGAQIRGRVLHFASRNAMDIENL 461

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+  ++           ++ P D++ L+  +     ++      G+ S  NL   + K R
Sbjct: 462 GESLVEQLVAKGM----VKDPGDLYFLREEELAGLERM------GEKSARNLLQGLLKSR 511

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S  R +F LGIRHVG   AR LAK   S +   +            +  L  VP +G 
Sbjct: 512 EQSFARLLFGLGIRHVGRATARELAKACSSIEVLKEA----------SFEELSEVPDIGP 561

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHK 665
           +IA++I +++  P     +E L +   P         V++  E   +VFTG LQ+  R  
Sbjct: 562 VIARSIRDWFLKPAIPSLIEKLRRAGLPLAAEEPGPLVNTNFEGLTVVFTGGLQRHDRSS 621

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A E V   G +V + +S+KT +++ G   GSKLEKA++LG++I+ E++F  LL
Sbjct: 622 AGELVVARGGIVVSTVSKKTGLVVAGKEAGSKLEKARKLGLRIITEDEFDALL 674


>gi|294815250|ref|ZP_06773893.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
 gi|326443605|ref|ZP_08218339.1| NAD-dependent DNA ligase LigA [Streptomyces clavuligerus ATCC
           27064]
 gi|294327849|gb|EFG09492.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 767

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/742 (31%), Positives = 358/742 (48%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR+  + L ++I  H   YY   +P+I DSE+D L R  + +    P L     P+ 
Sbjct: 47  PARARERHAELAEQIEEHRFRYYVKDQPVISDSEFDRLLRSLEELEERHPALC---TPDS 103

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G+    L KV H    LSL+  ++ E+L  +  R+ R     D +   F  E K
Sbjct: 104 PTQKVAGQYETDLAKVEHRERMLSLDNAFDEEELTAWAERVEREVGSPDFH---FLCELK 160

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YEKG+   AA RGDG  GED++  IR I  +P  L  + IPE++E+RGEVY
Sbjct: 161 VDGLAVNLTYEKGRLTRAATRGDGRIGEDITPNIRTIADVPDRLRGDRIPELVEIRGEVY 220

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
              + F  LN+  IA G +PYANPRN+ASG LR+ +P    T  L+  VHG+G       
Sbjct: 221 FPMDQFQQLNERRIAAGEQPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAREGFDI 280

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                    +R  G P     R  ++  G+  +       R ++ ++IDG+V K+DE  L
Sbjct: 281 DCLSHAYDLLREWGLPTARHNRVVDSLEGVREFIAHYGENRHSMEHEIDGVVVKLDEIPL 340

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  AR+PRW I+ K+  ++ +TRL+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 341 QGRLGSTARAPRWAIAWKYPPEEVNTRLVDILVGVGRTGRVTPYAQVEPVQVAGSEVEFA 400

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D +K            + + +GD V++++AG+VIP+++  +V  R    + F  P
Sbjct: 401 TLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRDGTEREFVMP 449

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC    +C AQ  ERL +   R + +IE  G    
Sbjct: 450 AECPECGTEL-----RPMKEGDVDLRCPNARSCPAQLRERLFYLAGRRSLDIEHFGYVAA 504

Query: 492 DFFFKSEDPAF-SIRIPADIFTLQRRQQ--------------------TSTTK----IEN 526
               +  +PA   ++   D+F+L   Q                     T   K      N
Sbjct: 505 AALTRPLEPAEPPLKDEGDLFSLTVEQLLPIRAYVLDPDSKLPKRDPKTGEEKIATVFAN 564

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   +  +I   +   L R +  L IRHVG   A +LA+ + S Q   +    
Sbjct: 565 QEGEPRKNALAMLRNIEAAKTRPLARVLTGLSIRHVGPVAAEALAREFRSVQRIQEATEE 624

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVS 644
            +A              VG IIA ++ +++    +   +                E+   
Sbjct: 625 ELAAT----------EGVGAIIAASLKQWFAEEWHQEILRKWEAAGVRMAEEGADEEQGP 674

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTLQ   R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 675 RPLEGVTVVVTGTLQDYTRDGAKEALQSLGAKVTGSVSKKTAFVVVGDNPGSKFDKAMQL 734

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
            V ++ E+ F  LL+Q     R
Sbjct: 735 KVPVLREDGFTLLLEQGPDAAR 756


>gi|227542668|ref|ZP_03972717.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181551|gb|EEI62523.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 679

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/713 (29%), Positives = 348/713 (48%), Gaps = 50/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
                L  ++ YH D YY    P I D+E+D L  +   +    P L     P+ P  ++
Sbjct: 7   ARWEELAAQVRYHRDKYYN-GTPEITDAEFDVLFSQLQQLEAEHPGL---RAPDSPTLEV 62

Query: 79  GGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           G           + H     SL+ +++ ++L +++ R           S  +++E KIDG
Sbjct: 63  GAPSPEGSSFENIAHLERMYSLDNVFSKDELEQWLIRT---------PSDTYSVELKIDG 113

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVY 192
             I + Y  G+   AA RGDG  GE+++A  R I  IP  L  N    IP ++EVRGEVY
Sbjct: 114 VSIDLVYRDGELATAATRGDGTVGEEITANARMITGIPDHLQENDAFPIPSVLEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           I+ +DF  +N++     +KP+ANPRNAA+G +R+ +P  +  R L    HG+G    I  
Sbjct: 174 IAIDDFPLVNEQRQLENKKPFANPRNAAAGSMRQKDPQAVKKRKLTLVCHGIGAAEGISF 233

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q E  + +   G PV+      ++   +     +    R    +++DG+V KVD    
Sbjct: 234 ESQTEAYKALAAFGLPVSEYTTVVHSHEEVHEMVEKWADHRHDAVFEMDGMVVKVDNREQ 293

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  +R+PRW I++K+  ++A T+L+D+ + +GRTG +TP A +EPV + G+ +  A
Sbjct: 294 QRALGATSRAPRWAIAYKYPPEEAVTKLIDVRVGVGRTGRVTPFAIMEPVEVAGSTVEMA 353

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+  +             + + +GD+V++++AGEVIP+V+  + + R    +PF FP
Sbjct: 354 TLHNQSEVNR-----------KGVLIGDQVVIRKAGEVIPEVLGPVADLRDGTERPFVFP 402

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C +++         +  A  RC    +C  Q   RL++   R  F+IE LG++  
Sbjct: 403 TLCPQCGTKL-----APAKEEDADWRCPNTRSCPGQLAGRLEYIAGRGVFDIEALGEKAA 457

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               ++      +   AD+FTL       +    N  G  + +   L   +  ++   L 
Sbjct: 458 ADLVRT----GILTDEADLFTLTEDDLLDSRVYTNSKGAVNAAGKKLIAGLKTQKETDLW 513

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I  L IRHVG   AR+LA+ + S     +     +A              VG +IA +
Sbjct: 514 RVITGLSIRHVGPTAARALAREFGSMDAIRKATEEELAAT----------EGVGGVIAAS 563

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IV+++    +   V+A  +          +     +E   +V TG+L+   R   +E + 
Sbjct: 564 IVDWFSVDWHRAIVDAWAEAGVTMEDERGEAKEQTLEGLTIVVTGSLENYTRDGVKEAII 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           + G   S  +S+KTD ++VG N GSK  KA++LG  I+NE+QF  LL     T
Sbjct: 624 ERGGKASGSVSKKTDYVVVGANAGSKAAKAEELGRPIINEQQFEELLATGAVT 676


>gi|159904348|ref|YP_001551692.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
           9211]
 gi|254781392|sp|A9BDC5|DNLJ_PROM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|159889524|gb|ABX09738.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Prochlorococcus marinus str. MIT 9211]
          Length = 697

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/726 (30%), Positives = 370/726 (50%), Gaps = 62/726 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K    L + ++  +  YY    P++ D+ YD L R    I    P L  +   + P  ++
Sbjct: 10  KRSFELRKLLNRANHAYYVLDTPLMEDTVYDRLYRELLNIEKNHPSLITA---DSPSQRL 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTLEPK 133
           G        KV H IP +SL+  +N E+L+ +  RI +   +K++      SI F  E K
Sbjct: 67  GSTPAKEFVKVEHKIPLMSLDNAFNFEELQDWDLRIRKLLNQKNNFGILKTSIDFACELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           IDG+ + + Y  G  V AA RGDG +GE+++A ++ I +IP  L + N P  +EVRGE +
Sbjct: 127 IDGSALALSYANGVLVQAATRGDGVAGEEITANVKTITSIPLSLDIENPPSWLEVRGEAF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K  F  +N          +ANPRNA +G LR+L+P  +  R L+FF + +    +   
Sbjct: 187 LPKQTFDGINLLRKQQREALFANPRNACAGTLRQLDPQIVASRQLDFFAYKMYLPKDWDP 246

Query: 252 KG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           +G        Q   L+ ++  GF VN   +   + H + S+++  +  R  LPY  DG+V
Sbjct: 247 QGENIHQPEAQDAALKWLKKAGFKVNPNTKIFKSLHEVQSFFDIWEKKRHKLPYTTDGVV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+ F LQ+ LG   +SPRW I+ K+  ++A T+L+++  Q+GRTG +TPVA  EP+ +
Sbjct: 307 VKVNNFKLQEMLGVTQKSPRWAIALKYPAEEAPTKLINLSYQVGRTGTVTPVAEFEPIPL 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G ++  ATLHN D ++ L           D+   D ++V++AGE+IP+VV ++   R  
Sbjct: 367 AGTIVRKATLHNADRLQSL-----------DLHNEDTIVVRKAGEIIPEVVCVLKELRPQ 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           ++     PS CP C  ++VR      G   AA +C   L C A     L+H+VS+ A NI
Sbjct: 416 NSTRLYLPSNCPECDEKLVR------GTDQAATKCVNNL-CPAIIQGALRHWVSKKAMNI 468

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + ++           ++   D++ L  +      ++      G+ S   + +SI 
Sbjct: 469 DGVGSKVIEQLVNK----GIVKSIPDLYELNYQMLFGLERM------GEKSAHKVIESIE 518

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +     + ++ LGI H+G   A+ LA  + S        + +     +    + ++  
Sbjct: 519 KSKTQPWNKQLYGLGILHIGEGNAKLLANAFASE-------DELSHAAINSPERIAKIHG 571

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSP---------SIGRHEKNVSSEIENKKLVF 654
           +G+ + +++ E++++  N   +  L +             +I     + + E+  K+ V 
Sbjct: 572 IGNEMVESLQEWFEDESNQRIISRLKELGVQLKSTANDSGAIKSVINSSNKEVLGKRFVL 631

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGT++ I R  AQE + + G  V++ +S KT  +I G NPGSKL KA++LG+KI+NEE F
Sbjct: 632 TGTMESINRDVAQEMIEKAGGKVNSSISSKTTYLITGSNPGSKLSKAKELGIKIINEEDF 691

Query: 715 LFLLQQ 720
             LL +
Sbjct: 692 FNLLSK 697


>gi|262282968|ref|ZP_06060735.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA]
 gi|262261220|gb|EEY79919.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA]
          Length = 652

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/702 (31%), Positives = 365/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +S L   ++ +   YY    P + DSEYD L R   ++   +P+      P  P ++
Sbjct: 2   KDRMSELVSLLNRYAHEYYTKDAPSVSDSEYDQLYRELVSLEEQYPNEIL---PESPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++  +L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKVLDGFEKYQHQYPLYSLQDAFSRAELVAFDERVRK-----EFPEVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K  
Sbjct: 114 SISLAYENGILVAGATRGDGSIGENITENLKRVKDIP--LTLPEPLTITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q +
Sbjct: 172 FDAVNQLRQENGEAEFANPRNAAAGTLRQLDTSVVAKRNLATFLY--QEASPTSEATQED 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+K+  LGF VN     A+T   +  +  ++   R  LPY+IDG+V KV+  + Q++LG
Sbjct: 230 VLEKLSQLGFSVNEKRVLASTIDQVWDFIEKVGQERDKLPYEIDGIVIKVNHLAAQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR  D V+V +AG++IP V+ ++ ++R  D      PS CP 
Sbjct: 350 DYIR-----------EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSDEH-LDVPSQCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++   +        A RC   L C AQ +E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CQSDLLHFEDE------VALRCINPL-CPAQIMEGLAHFASRDAMNISGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     +R  A I+ L      S   +  +  F + S   LY++I   ++ S E+ +F 
Sbjct: 451 KD----LVRDVAGIYRL------SIEDLLQLENFKEKSANKLYNAIQASKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +    + AQ     IA           +  +G +IA+++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPSLAQAEQEEIA----------SIDSLGMVIAKSLHSYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   ++      V+ +    +    + +  K +V TG L+ + R +A+E + +LGA
Sbjct: 551 AQEGTQILLKELEEAGVNLAYLGEKVAADAVLSGKTVVLTGKLETLTRTQAKEKLLRLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD++I G + GSKL KAQ+LG++I +E     L
Sbjct: 611 NVAGSVSKKTDLVIAGVDAGSKLAKAQELGIEIQDEAWLEQL 652


>gi|254374741|ref|ZP_04990222.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548]
 gi|151572460|gb|EDN38114.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548]
          Length = 678

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 393/713 (55%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYGKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  + +G+G  S+ 
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 250 F--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F   + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRV DRV+V+RAG+VIP+VV  +   R PDAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAQV 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C S +    +       A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPISCPVCDSAIENVNDQ------AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++    +      I+ PADI+ L   Q T   ++         S  N+ DSI K + 
Sbjct: 466 AKLIEQLVAAN----LIKYPADIYKLNFDQLTGLERMGA------KSSQNVLDSIKKSKT 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   +  LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDVLANHFGSLESFRDA----------KFEELIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE LL       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|307067701|ref|YP_003876667.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus pneumoniae AP200]
 gi|306409238|gb|ADM84665.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus pneumoniae AP200]
          Length = 648

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/699 (30%), Positives = 356/699 (50%), Gaps = 53/699 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++GG
Sbjct: 1   MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  I+
Sbjct: 58  KVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F  
Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+
Sbjct: 171 VNQVRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKGLK 228

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   
Sbjct: 229 YLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTV 288

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI
Sbjct: 289 KAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI 348

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
                        +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S
Sbjct: 349 -----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSCNS 396

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +  
Sbjct: 397 DLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAAN- 448

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F LGI
Sbjct: 449 ---LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGLGI 499

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVG++ ++ L +Y+ S +N  Q           D   +  +  +G +IA+++  ++   
Sbjct: 500 RHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFATE 549

Query: 620 RNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            +   +       V+           + +    +V TG L++++R +A+  +  LGA V+
Sbjct: 550 GSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVT 609

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 610 GSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 648


>gi|226356158|ref|YP_002785898.1| DNA ligase (NAD(+)) [Deinococcus deserti VCD115]
 gi|254778151|sp|C1CVC7|DNLJ2_DEIDV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|226318148|gb|ACO46144.1| putative DNA ligase (NAD(+)) [Deinococcus deserti VCD115]
          Length = 686

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/718 (30%), Positives = 357/718 (49%), Gaps = 47/718 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +A S +       +L  E++ H+  YY+   P I D EYDAL R    +    P+     
Sbjct: 3   QAASPDD-HARYLALRAEVARHNRAYYEQDAPEISDDEYDALARALRDMEARHPEWVED- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFF 128
             + P+  IGG  + +   V H  P  SL+ +++ ++LR++  ++ R      + +   F
Sbjct: 61  --DSPVQTIGGAPSAAFEPVAHLTPMTSLDNVFDADELREWQEKLARSLNLPPESDDFTF 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T E KIDG  + + Y  G   +AA RG+G  GE V+A +  IP IP+ L   +   +EVR
Sbjct: 119 TGEIKIDGLSVNLYYLDGTLQWAATRGNGRVGEMVTAQVLTIPGIPQHL-DGLKGQLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GEVY+S+ DF A N +   +G     NPRN A+G LR+ +P    TR L    + LG+  
Sbjct: 178 GEVYLSRADFAAFNAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRNLKAIFYSLGRRD 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            + A+ Q E+LQ +   GFPV++       +     Y+  M   RS   +D DG V K+D
Sbjct: 238 GVEARTQSEVLQWLAGRGFPVSHYSETFRGYVAAADYHRRMTEARSNFEFDADGTVIKLD 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             +LQ++ G  +R+PRW I+ KF  +Q  T L  I + +GRTG L P+A L P  I G+ 
Sbjct: 298 PLALQEEAGFTSRAPRWAIAFKFPVEQVETVLESITVNVGRTGKLAPLAHLAPRLIEGST 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNEDYI+ +           D+RVGD V+V+++G VIP+++ ++  +R     P
Sbjct: 358 VSKATLHNEDYIRQM-----------DLRVGDTVVVRKSGGVIPQIMRVVTEKRPEKTTP 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP++CP C   V R       +  A   C    AC AQ+ ER+++FVSR A ++ G+G
Sbjct: 407 FVFPTYCPECGHEVTR------AEGDANTYCPNP-ACPAQRFERIRYFVSRGAMDVRGIG 459

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +    ++      +R  AD++ L   Q     +       G+    N+   +   + 
Sbjct: 460 EKLVIQVIET----GLVRDAADLYLLTAEQLAGLERG------GEKKAQNVLAQLEASKT 509

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R I +LG+ HVG   A++LA+ + S     +     I            VP +G +
Sbjct: 510 RPLWRLINALGMTHVGERNAQALARAFGSLDALLRATPEQIEA----------VPGMGKV 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            A ++     +P     +E L +    S    +     ++     V TG+L +  R + +
Sbjct: 560 TAVSVSAALADPTMRNLIERL-RAAGMSPEETQTVRGEQLAGLNFVITGSLSQP-RDELK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             +   GA V+  ++RKT  +I G + GSKL++A++L V +++E     LL Q    L
Sbjct: 618 ALLEAAGARVTGSVTRKTSYLIAGQDAGSKLDRARELAVPVLDEAALGTLLHQRGVQL 675


>gi|225620892|ref|YP_002722150.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
 gi|254781267|sp|C0QVE5|DNLJ_BRAHW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225215712|gb|ACN84446.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
          Length = 663

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/707 (33%), Positives = 387/707 (54%), Gaps = 48/707 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE+A++ +  L + I+YH+  YY    P I D EYD L R  + +   FP+L +    
Sbjct: 1   MNIEEAKQRIEQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P NK+GG +     K  H I   SL  + N E+  +F  R+ +   +     I +T+E
Sbjct: 58  DSPTNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLEFDNRMQKELNQS---KIKYTVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + YEKGK   A+ RGDG  GE+V+  ++ +  +P+ +      I  VRGE 
Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMSNVPKSIKEKKKLI--VRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            I+K DF ALN E   +   P+AN RNAASG LR+L+  +   R L FF + +    +  
Sbjct: 173 LITKKDFEALNKEREELEEIPFANARNAASGGLRQLDSAESKKRRLKFFAYQIANYKDFD 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              +Y+ ++ +  LGF V  GV        ++  Y +++  RS + Y+IDGLV KVD+  
Sbjct: 233 LTNEYKSMEFLSELGFTV-EGVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVK 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +R+PR+ ++ KF  ++  T L +I++Q+GRTG LTPVA+LEPV +GG  ++N
Sbjct: 292 HQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN + IK            +DIR+GD V+V R+G+VIPK+  +++ +R  D++PF F
Sbjct: 352 VTLHNPNEIKS-----------KDIRIGDTVVVIRSGDVIPKITRVVLEKRTADSKPFEF 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C                   RC     C ++    +++FVS+ A N+E +GK+ 
Sbjct: 401 PKKCPVCGGDT------AVTDGDVIVRCINE-ECPSKITRYIEYFVSKPAMNMERIGKEW 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F KS      ++ PAD++ + R       ++      G+     + +SI   +N +L
Sbjct: 454 IAVFTKS----GLVKTPADLYKITRDDLFKFERM------GEKLAGYMLESIENSKNTTL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFI++LGIR VG   A  LAKY+ S +NF +   + +            +  +G+I A+
Sbjct: 504 KRFIYALGIRQVGETTADLLAKYFTSIENFKKATIDDLQ----------NIEGIGEISAK 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F  N + +  ++ LL      +      V S +  K +V TG+++   R+ A+E  
Sbjct: 554 SIYDFLHNEKTLKLIDDLLASGVNPVFEKVVTVESPLTGKNVVITGSIEGFTRNSAKEAA 613

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +LGA V + +S+ T+I+IVG+  GSKL+KAQ LGV+IM  ++F+ L
Sbjct: 614 ERLGATVQSAVSKNTNILIVGEKAGSKLKKAQDLGVEIMEADEFIKL 660


>gi|17546117|ref|NP_519519.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) protein
           [Ralstonia solanacearum GMI1000]
 gi|81505313|sp|Q8XZJ7|DNLJ_RALSO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|17428413|emb|CAD15100.1| putative dna ligase (polydeoxyribonucleotide synthase [nad+])
           protein [Ralstonia solanacearum GMI1000]
          Length = 813

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/837 (29%), Positives = 385/837 (45%), Gaps = 152/837 (18%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
            +   P    S E      ++L   ++ +   YY   +P + D+EYD L R  +A+    
Sbjct: 2   SKTEHPASGASPET---RAAALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEH 58

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQK 120
           P+L     P+ P  ++GG +      V H +P LS+    +        F   + R    
Sbjct: 59  PEL---RTPDSPTLRVGGAVLPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRRELGL 115

Query: 121 KD-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-- 177
            + D  + +  E K DG  I +RYEKG  V AA RGDG +GEDV+  IR I  IP  L  
Sbjct: 116 AESDPPVEYAAELKFDGLAINLRYEKGFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRP 175

Query: 178 -SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
               +P+++EVRGEVY+ ++DF  LN      G K + NPRN A+G +R+L+P     R 
Sbjct: 176 VGGAVPDVLEVRGEVYMRRDDFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERP 235

Query: 236 LNFFVHGLGKTSEI--FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           L+FF +GLG+ +           ML  +   GFPV+          G+V ++  + + R 
Sbjct: 236 LSFFAYGLGEAAGWSGMPDTHSGMLDALVAYGFPVSKERAAVKGGEGLVQFHAAIGAKRD 295

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
           +LP+DIDG+VYKV+  +LQ++LG R R PRW ++HK+  ++A T +  I +Q+GRTG +T
Sbjct: 296 SLPFDIDGVVYKVNSLALQRELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAIT 355

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVARL PV +GG  +TNATLHNED ++            +D+RVGD V+V+RAG+VIP+V
Sbjct: 356 PVARLVPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEV 404

Query: 414 VDIIVNERHPD---------------AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           V +++  R  +                 PF  P  CP+C S VVR+         A  RC
Sbjct: 405 VAVVLERRPMEDVPGSDLFNPTQQPKHPPFELPRSCPVCGSHVVREEGE------AVARC 458

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           +GGL CSAQ+ E ++HF  R   +IEGLG++ +D   + E     +   AD++ L     
Sbjct: 459 SGGLFCSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELE----YVHGIADLYRLTLDDF 514

Query: 519 TSTTKIENIL-----------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG---- 563
               +  +                     NL D I   +   L RF+F++GIRHVG    
Sbjct: 515 LEMKRRADERDGVTPETVAAGKIATKWAENLLDGIRASKTPPLARFLFAMGIRHVGESTA 574

Query: 564 ----------------------------AEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                                       A +A ++A ++   +N  Q ++ ++       
Sbjct: 575 KTLADWLGSLAIVRRAPAPLLLTLPDVGATVAEAIADFFAEPKN-QQALDALLTAGVAPQ 633

Query: 596 -----------------------------------------------LSLIRVPLVGDII 608
                                                          +   ++  +   +
Sbjct: 634 GEHPPSAKLRDQLEPAELYAALGVPKLTAIRSKQLATLVPSLAQLANVDTAQLEGLPADV 693

Query: 609 AQAIVEFYQNPRNI------CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           A +++ +     +        A+ A L    P+    E      +  K +V TGTL  + 
Sbjct: 694 AASLLAWLDADDHRTRLGTLDALRAELLAAMPAGAAEE----GALSGKTVVLTGTLPTLS 749

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+  +   GA VS  +S+KTD ++ G   GSKL +AQ+LGV++++E   L LLQ
Sbjct: 750 RDEAKAMLEAAGAKVSGSVSKKTDYVVAGVEAGSKLARAQELGVRVLDEAGMLALLQ 806


>gi|325915467|ref|ZP_08177781.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937]
 gi|325538349|gb|EGD10031.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937]
          Length = 833

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/846 (29%), Positives = 406/846 (47%), Gaps = 164/846 (19%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + + +L + I   +  Y+   +P + D +YD L R  +A+    P LA +   + P  +
Sbjct: 8   AQRIDALRRRIEDANYRYHVLDEPQMADVDYDRLMRELEALEAEHPALATA---DSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G        +V H++P LSL   ++ E++ +F+ RI       +     F+ EPK+DG 
Sbjct: 65  VGHLAASRFAEVRHALPMLSLGNAFSDEEVSEFVRRISERL---EVKQPVFSAEPKLDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P+++EVRGEVY+ + 
Sbjct: 122 AISLRYEDGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGQGWPKVLEVRGEVYMPRA 181

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK-TSEIFAKGQ 254
            F A N  M A G K  ANPRN A+G LR+L+      R L+FF +G+G+  +    +  
Sbjct: 182 AFEAYNAHMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVGNGALPQTH 241

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L ++R  GFPV+  V       G+++YY  + + R  L +DIDG+VYK+D+ + Q++
Sbjct: 242 SAILAQLRDWGFPVSQLVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQRE 301

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLH
Sbjct: 302 MGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLH 361

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ C
Sbjct: 362 NADQIARL-----------DVRVGDTVIVRRAGDVIPEVAGVVADQRQPGTQEWRMPTHC 410

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++  
Sbjct: 411 PVCGSEIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVL 464

Query: 495 FKSE-------------DPAFSIRIP-----ADIFTLQRRQQTSTTKIENIL-------- 528
             S              D    +R+         F  + R+  +T     +         
Sbjct: 465 VDSGLVQGVADLYLLTVDQLLQLRLISTADSPHAFLREAREHLATGAYAQLEATMMRIGV 524

Query: 529 ---GFGD--------------------------VSVTNLYDSINKRRNISLERFIFSLGI 559
              G  +                              NL ++I   RN +LERF+F+LGI
Sbjct: 525 DLAGEHEAPQTWQADLLRAGLPSFDWNRRKIATKWAENLIEAIETSRNTTLERFLFALGI 584

Query: 560 RHVGAEIARSLAK-------------------------------YYLSYQNFAQEINNII 588
            HVG   A++L+                                ++       Q I++++
Sbjct: 585 EHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQPGNQQAIDDLL 644

Query: 589 ------------------AHNNDDWLSLIRVPLVGDIIAQ-------------------- 610
                             A +    L  + +P V  + AQ                    
Sbjct: 645 QRGVRIGDAHPPSPKLRDALSFASVLEDMDIPKVTPVRAQQLAAAVPSFDALRDAGSDAL 704

Query: 611 -----------AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
                      A++++   P N       +  ++ V   +   E   +  ++ + +V TG
Sbjct: 705 LQAGVPAPVVAALLQWLDRPENAALATSAQRAMETVLARLPEAEAVQAGPLDGQTVVITG 764

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L 
Sbjct: 765 TLTALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLA 824

Query: 717 LLQQYN 722
            L ++ 
Sbjct: 825 FLAEHG 830


>gi|296126514|ref|YP_003633766.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563]
 gi|296018330|gb|ADG71567.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563]
          Length = 663

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/707 (34%), Positives = 386/707 (54%), Gaps = 48/707 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+A++++  L + I+YH+  YY    P I D EYD L R  + +   FP+L +    
Sbjct: 1   MNKEEAKQKIKQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P NK+GG +     K  H I   SL  + N E+   F  R+ R     D ++I +T+E
Sbjct: 58  DSPTNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLDFDNRMQREL---DASNIKYTVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + YEKGK   A+ RGDG  GE+V+  ++ +  +P+ +       + VRGE 
Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMSNVPKSIKEK--NKLIVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            I+K DF ALN E   +   P+AN RNAASG LR+L+  +   R L FF + +    +  
Sbjct: 173 LITKKDFEALNKEREELEEIPFANARNAASGGLRQLDSAESKKRRLKFFAYQIANYKDFD 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              +Y+ ++ +  LGF V  GV        ++  Y +++  RS + Y+IDGLV KVD+  
Sbjct: 233 LTNEYKSMEFLSDLGFTV-EGVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVK 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +R+PR+ ++ KF  ++  T L +I++Q+GRTG LTPVA+LEPV +GG  ++N
Sbjct: 292 YQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN + IK            +DIR+GD V+V R+G+VIPK+  +++ +R  D++PF F
Sbjct: 352 VTLHNPNEIKS-----------KDIRIGDTVVVIRSGDVIPKITRVVLEKRPEDSKPFEF 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C                   RC     C ++    +++FVS+ A N+E +GK+ 
Sbjct: 401 PKKCPVCGGDT------AVTDGDVIVRCINE-ECPSKITRYIEYFVSKPAMNMERIGKEW 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F KS      ++ PAD++ + R       ++      GD   + + +SI   +N +L
Sbjct: 454 IAVFTKS----GLVKTPADLYKITRDDLFKFERM------GDKLASYMLESIENSKNTTL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFI++LGIR VG   A  LAKY+ S +NF +               L  +  +G+I A+
Sbjct: 504 KRFIYALGIRQVGETTADLLAKYFTSIENFKKA----------AIEDLQNIEGIGEISAK 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F  N R +  ++ LL      +      V S +  K +V TG+++   R  A+E  
Sbjct: 554 SIYDFLHNERTLKLIDDLLAAGVNPVFEKVVTVESPLTGKNVVITGSIEGFTRTSAKEAA 613

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +LGA V + +S+ TDI+IVG+  GSKL+KAQ LG+ IM  ++F+ L
Sbjct: 614 ERLGAAVQSAVSKNTDILIVGEKAGSKLKKAQDLGIAIMEADEFIKL 660


>gi|119356312|ref|YP_910956.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266]
 gi|166215573|sp|A1BDQ5|DNLJ_CHLPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119353661|gb|ABL64532.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266]
          Length = 676

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/713 (31%), Positives = 367/713 (51%), Gaps = 52/713 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             RK +  L +EI+ H+  YY  ++P I D E+D L  R   +  AFPD      P+ P 
Sbjct: 6   NVRKAIEELRREINRHNTLYYVDARPEISDYEFDRLMERLIELEKAFPDFV---TPDSPS 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +++GG +      V H  P LSL   +++ ++  F +R+ +    +         E K D
Sbjct: 63  HRVGGAITREFPSVRHREPMLSLSNTYSLAEVEDFYSRVKKLLLVEGVREQDMAAELKFD 122

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-------NIPEIIEVR 188
           G  I++ Y  G  V  A RGDG  G+D++  ++ + ++P  + L        I   IE+R
Sbjct: 123 GVAISLLYRDGLLVQGATRGDGTEGDDITTNLKTLSSVPLRIPLTSLPVIEGIERDIEIR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL-GKT 246
           GEV++ K+DF  LN+      R  +ANPRNA +G L+  +  ++ R  LNF  + L   +
Sbjct: 183 GEVFMQKDDFARLNEARPEEDR--FANPRNATAGTLKLQDSGEVARRRLNFVAYYLRLSS 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            + F   QY+ L+ +  LGF      R       I  +       R  LPY+ DG+V K+
Sbjct: 241 QDSFLLTQYDRLELLGQLGFFTGKHYRLCRDMKEIGDFIGYWAVERWNLPYETDGVVLKL 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +L  ++G  A+SPRW I++K+  +QA T L  +  Q+GR G +TPVA LEPV + G+
Sbjct: 301 NDVALWPRIGATAKSPRWAIAYKYPAQQAKTVLQGVAFQVGRLGTVTPVAELEPVRLAGS 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ +TLHN D I+ L            + + DRV+++++GEVIPKV+ ++++ER  +A+
Sbjct: 361 TVSRSTLHNFDEIERL-----------GLMLHDRVIIEKSGEVIPKVIRVVLDERPENAE 409

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   PS CP C + + +  N        ++ C    +C AQ   RL HF SR+A +I+ L
Sbjct: 410 PVGVPSVCPECGASLEKPENE------VSYYCPDQDSCPAQIRGRLLHFASRNALDIQSL 463

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+  +    +       +R   D++ LQ+ Q  +  ++      G  S  NL  ++ + R
Sbjct: 464 GESLVAQLVQK----GLVRDAGDLYLLQQPQLEALERM------GRKSAHNLLRALQESR 513

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S ER +++LGIRHVG   AR LA+ Y + +         +A           VP VG 
Sbjct: 514 EKSYERLLYALGIRHVGQATARELARAYETVEALQNASEEELA----------TVPDVGP 563

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++A ++ +++        +  L     P      +K ++   E   ++FTG L++  R +
Sbjct: 564 VVAHSVKDYFSKSSTQMLLRKLRDAGFPLRFTGPQKLINRNFEGVNVLFTGALERYGRQQ 623

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A E V Q G  V   +SR T +++ G  PGSKL+KA++LGVK+++E++F  +L
Sbjct: 624 ASELVQQRGGRVVGSVSRSTGVVVAGSEPGSKLDKARKLGVKVISEDEFNAML 676


>gi|87123447|ref|ZP_01079298.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp.
           RS9917]
 gi|86169167|gb|EAQ70423.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp.
           RS9917]
          Length = 694

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/724 (29%), Positives = 341/724 (47%), Gaps = 61/724 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +    L   ++     YY    P + D  YD L R    +  A P L     P+ P  ++
Sbjct: 7   ERARELRTLLNRAAHAYYVLDAPEMEDPVYDRLYRELVELEQADPSLC---SPDSPTQRV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTLEPK 133
           GG        V H I  LSL+  +NI +L  +  R+ R   ++        ++    E K
Sbjct: 64  GGPPAAGFQSVRHRIGLLSLDNAFNIGELEAWYARLLRVLDREPGAGAPLPALPMVGELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           IDG  + + YE+G  V AA RGDG  GE ++A +R I  +P  L L   PE +EVRGE +
Sbjct: 124 IDGNALALSYEQGVLVRAATRGDGEQGEAITANVRTIGAVPLRLQLEQPPEWLEVRGEAF 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-------- 243
           I    F A+N E  A G   +ANPRNA +G LR+L+P  +  R L+FF + L        
Sbjct: 184 IPDGTFSAINAEREARGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPEGWQA 243

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G         Q+E LQ ++  GF VN       +   +  ++ + +  R  LPY  DG+V
Sbjct: 244 GAGDPARPSSQWESLQWLKRAGFKVNPNAELLPSLAAVEGFFAQWQEGRKALPYATDGVV 303

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+++  LQ   G   ++PRW I+ K+  ++A ++LL +  Q+GRTG++TPVA  E V +
Sbjct: 304 VKLNDLRLQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLTCQVGRTGVVTPVAEFEAVPL 363

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ ATLHN D +  L           D+   D ++V++AGE+IP+VV ++   R  
Sbjct: 364 AGTSVSRATLHNADRLAEL-----------DLHADDTIVVRKAGEIIPEVVRVLTELRPA 412

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +A     P  CP C S +VR+         AA RC    +C A     L+H+VS+ A ++
Sbjct: 413 NAARLELPHTCPECGSELVREEGE------AATRCVNS-SCPAILRGALRHWVSKGALDV 465

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG + ++           +   AD++ L      S  ++         S  NL  ++ 
Sbjct: 466 DGLGSKLIEQLVDR----GLVSSIADLYRLDGALLASLERMGQ------KSADNLVAALA 515

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +     R ++ LGI HVG   A++                ++ A   D   ++  V  
Sbjct: 516 ASKAQPWHRQLYGLGIHHVGEVNAKA-------LAAAFPSAADLAAAAADHADAITAVFG 568

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--------NVSSEIENKKLVFT 655
           +G  IAQ++ +++    N+  +  L +         E+          S+++  +  V T
Sbjct: 569 IGAEIAQSLQQWFATAANLNLLAELERLGFSLSSSEEELQAAAERSAASAQLSGQTFVLT 628

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R +A+E +   G  VS  +S+KT  ++ G+  GSKL KA+ LGV +++E    
Sbjct: 629 GTLPSLSRSQAKELIEAAGGKVSGSVSKKTSYVVAGEEAGSKLSKAESLGVPVLDEAGLQ 688

Query: 716 FLLQ 719
            LL 
Sbjct: 689 ALLA 692


>gi|302558233|ref|ZP_07310575.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
 gi|302475851|gb|EFL38944.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
          Length = 731

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/741 (29%), Positives = 354/741 (47%), Gaps = 62/741 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR++ + L + I  H   YY    P+I D+++D L R  +A+            P+ 
Sbjct: 13  PAEAREKHAKLAERIEEHRFRYYVNDAPVISDADFDRLLRELEALEEE---HPELRTPDS 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  +N +DL  ++ RI+R           F  E K
Sbjct: 70  PTQKVAGAYETEFTSVEHRSRMLSLDNTFNDDDLAAWVERIHRELGT---QKYHFLCELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YE+G+ V AA RGDG +GED++  +R I  IP  L+ + +P+++E+RGEVY
Sbjct: 127 VDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLTGDEVPDVVEIRGEVY 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 187 FPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGVLEGYRG 246

Query: 252 KGQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +  +  + +R  G P +   R  +   G+  +       R ++ ++IDG+V K+DE  
Sbjct: 247 MTRLSQGYELLRTWGLPTSPHNRVVDDLEGVREFIAYYGENRHSVAHEIDGVVVKLDEIP 306

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +R+PRW I++K+A ++ +TRL++I + +GRTG +TP A++EPV + G+ +  
Sbjct: 307 LQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 366

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 367 ATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 415

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +         +     RC     C AQ  ERL +   R A +IE  G   
Sbjct: 416 PAECPECGTPL-----RPMKEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVA 470

Query: 491 LDFFFKS-EDPAFSIRIPADIFTLQRRQQ--------------------TSTTK----IE 525
                +  E     +R   D+F L   Q                     T   K      
Sbjct: 471 AAALTRPLEPEEPPLRDEGDLFDLTVDQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFA 530

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   +  +I   +   L R + SL IRHVG   A +LA+ + S     Q   
Sbjct: 531 NQEGEPRKNAVAMLANIAAAKERPLARVLTSLSIRHVGPVAAEALAREFRSIDRIEQATE 590

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643
             +A              VG IIA ++ +++    +   +                E   
Sbjct: 591 EELAAT----------EGVGGIIAASLKQWFAEDWHREIIRKWKTAGVRMEDERSGEDEG 640

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q
Sbjct: 641 PRPLEGLTVVVTGTLENFTRDGAKEALQSQGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQ 700

Query: 704 LGVKIMNEEQFLFLLQQYNTT 724
           L V ++NE+ F  LL+Q    
Sbjct: 701 LKVPVLNEDGFNVLLEQGPEA 721


>gi|332678645|gb|AEE87774.1| DNA ligase [Francisella cf. novicida Fx1]
          Length = 678

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/713 (35%), Positives = 392/713 (54%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYGKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P  L + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+   +  R L  + +G+G  S+ 
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 250 F--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F   + Q+E++  ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRV DRV+V+RAG+VIP+VV  +   R PDAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAQV 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S +    +       A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTSCPVCDSAIENVNDQ------AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++    +      I+ PADI+ L   Q T   ++         S  N+ DSI K + 
Sbjct: 466 AKLIEQLVAAN----LIKYPADIYKLNFDQLTGLERMGA------KSSQNVLDSIKKSKT 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   +  LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDVLANHFGSLESFRDA----------KFEELIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE LL       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I G+N GSKL KAQ LGV+++ EE    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGENAGSKLTKAQDLGVEVIFEEDLQNLL 678


>gi|257387145|ref|YP_003176918.1| NAD-dependent DNA ligase LigA [Halomicrobium mukohataei DSM 12286]
 gi|257169452|gb|ACV47211.1| DNA ligase, NAD-dependent [Halomicrobium mukohataei DSM 12286]
          Length = 700

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/722 (34%), Positives = 376/722 (52%), Gaps = 48/722 (6%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P+E  S ++AR++   L + I YHD  YY  + P+I D  YDAL  R +A+  AF  
Sbjct: 22  EFEPVEDFSDDEAREQAQRLREAIRYHDHRYYVLADPVIGDRAYDALFARLEALEDAFD- 80

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-D 123
               +    P  ++GGE    L  V H  P  S+++     ++R+F  R+         D
Sbjct: 81  ---LDREASPTQRVGGEPLDELASVEHVAPMGSIDQGGEASEVREFDRRVRDRLSDAGYD 137

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
             I +  EPK DG  + I YE G+F  AA RGDG  GEDV+  +R I ++P+ L  + P+
Sbjct: 138 GEIEYFCEPKFDGLSVEIVYEDGQFQRAATRGDGAVGEDVTENVRTIASVPQRLRGDYPD 197

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            + VRGEVY+ ++ F A N E I  G  P+ANPRNAA+G LR+L+P+    R L+ F+ G
Sbjct: 198 YLAVRGEVYMPRDAFTAYNSERIERGEDPFANPRNAAAGTLRQLDPSVTAERPLSIFLFG 257

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +   S +       + ++    G  V +     +     + Y +     R  L Y+IDG+
Sbjct: 258 VLDAS-VDFDSHGALHERFPEWGLRVCDRTTVVDDIDAAIDYRDRQLDARDDLDYEIDGV 316

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD+    + LG  +R+PRW  ++KF  ++  T L DI +Q+GRTG LTPVA L+PV 
Sbjct: 317 VIKVDDRRACELLGATSRAPRWAFAYKFPARKERTTLRDIAVQVGRTGRLTPVALLDPVE 376

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG  ++ A+LHN   I+ L               GD V +KRAG+VIP VV+++ +   
Sbjct: 377 VGGVTVSRASLHNPAQIEELGVDA-----------GDTVRIKRAGDVIPDVVEVVESS-- 423

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                FSFP  CP+C+S V RD             CTGGLAC AQ+   ++H+ SRDA +
Sbjct: 424 -GEATFSFPDRCPVCESAVERD--------GPMAFCTGGLACPAQRERAIEHYASRDALD 474

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG+G++ +     +E     +  PAD++ L   +  + +      G+G  S  NL   +
Sbjct: 475 IEGVGEKAVAKLLDAE----LVESPADLYDLTVDELAALS------GWGQRSAENLVAEV 524

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           +  R   L  F+ +LGI  VG   AR+LA+ + S++   +      A    D  +   V 
Sbjct: 525 DASREPPLANFLVALGIHDVGTVTARNLAREFGSFEAIRE------AGAAGDTDAFEAVD 578

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG ++A++I EF++  RN   ++ LL  V P     E      ++ +  VFTG+L    
Sbjct: 579 DVGPVVAESICEFFRGERNEAVLDDLLDHVDPQPADTE--TGDALDGQTFVFTGSLAGYT 636

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721
           R +AQ+ V   G   ++ +S  TD ++VGDNPG SK + A+  GV+ +++E F  LL   
Sbjct: 637 RSEAQDLVEAHGGSATSSVSGNTDYLVVGDNPGQSKRDDAEAEGVETIDQESFEELLADR 696

Query: 722 NT 723
             
Sbjct: 697 GI 698


>gi|323126984|gb|ADX24281.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 652

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/702 (32%), Positives = 365/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L + ++ +   YY    P + DSEYD L R    + + +P+       + P   
Sbjct: 2   KKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQ---DSPTQN 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+     K +     +  E KIDG 
Sbjct: 59  VGGTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRV-----KSEFPDATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G+    A RGDG  GE+++  ++ I  IP+VL    P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGQLQVGATRGDGSVGENITENLKQIKDIPQVL--PQPLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+E    G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q  
Sbjct: 172 FKAINEERQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLY--QEASPTTRSQQDH 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +  LGF VN     +++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLKALADLGFSVNQRHHLSSSMDEIWDFIQTVEAERDQLAYDIDGIVIKVNNLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L+PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLKPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R  +  P   PS CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVSDKR-QEQVPMWIPSQCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS +V   +        A RC   L C +     L+HF SR+A NI GLG   ++  F 
Sbjct: 398 CQSDLVHFEDE------VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +          ++ G  + S   L  +I   ++ S E+ +F 
Sbjct: 450 ---LAGLVHDVADIYKLTKEDLL------HLDGIKEKSAEKLLAAIETSKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+GA+ +R + +     ++        IA           +  +G +IA+++V+++
Sbjct: 501 LGIRHIGAKASRLILETCGDIEHLLTVREEDIA----------TIDGLGMVIAKSLVQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           Q    I  VE      V+ +    + + ++E+    +V TG L+K+ R+ A+  +  LGA
Sbjct: 551 QQDSAILLVEELKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD++I G + GSKLEKAQ LG++I  EE    L
Sbjct: 611 KVTGSVSKKTDLVIAGSDAGSKLEKAQALGIRIEGEEWLEQL 652


>gi|291536367|emb|CBL09479.1| DNA ligase, NAD-dependent [Roseburia intestinalis M50/1]
          Length = 671

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/710 (29%), Positives = 362/710 (50%), Gaps = 50/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+   ++  L  +I+YH D YY    P I D E+D L ++   +    P+L      
Sbjct: 1   MTPEE---QIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTK--- 54

Query: 72  NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P   +GG     +   V H++P LSL+ +++ E++  F+ ++         +   F +
Sbjct: 55  DSPTQHVGGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMKEQL-----DDPEFVV 109

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           E KIDG  + +RYE G    A  RGDG   GEDV+A  + I  + + L    PE +E+RG
Sbjct: 110 EYKIDGLSMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLKDK-PEYLEIRG 168

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EVY+   DF  +N++   +G+K +ANPRN A+G LR+L+      R L+ FV  + +   
Sbjct: 169 EVYMKNEDFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRG 228

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      +  + ++  G P+    +   T   + +    +   R  L YDIDG V K++ 
Sbjct: 229 MDIMTHTQGYEFLKRQGIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINR 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           +S ++ LG  ++ P+W I++K+  ++  T+LLDI++ +GRTG +TP A  EPV + G  +
Sbjct: 289 YSDRELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSV 348

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+D+I  L           D+ +GD ++V ++GE+IPKV ++   +R    + F
Sbjct: 349 SRATLHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKEVRKEKRTEGWKRF 397

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P  CP+C ++  R+ +       A  +CT    C AQ    + +FV RDA +I+G G 
Sbjct: 398 AIPDVCPVCGAKTEREKD------TADIKCT-SPNCPAQLERHIINFVGRDAMDIKGFGT 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++   +       I+  ADIF L+  ++    +   I+G  + +   L ++I K +  
Sbjct: 451 VYIEELVR----LGYIKDIADIFELKDHREELIEQ--GIIG-KEKNTDKLLETIEKAKEN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
                +   GI +VG   A+++ K + S          I+   + D  +L+ V  VG++ 
Sbjct: 504 DAYMLLTGFGIPNVGKAAAKTIMKRFSS----------ILDLEDADRDALMEVDDVGEVS 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A  I  F+ + +N   +  L            + + S +  K +V TGTL  + R +A E
Sbjct: 554 ADCIFRFFHDEKNKEMIARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAE 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            V + G  VS  +S+KTD ++ G++ GSKL KAQ+LG+ ++ E +   LL
Sbjct: 614 LVEKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663


>gi|111658008|ref|ZP_01408712.1| hypothetical protein SpneT_02000805 [Streptococcus pneumoniae
           TIGR4]
          Length = 648

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/699 (30%), Positives = 358/699 (51%), Gaps = 53/699 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++GG
Sbjct: 1   MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  I+
Sbjct: 58  KVLDGFEKYSHQYPLYSLQDAFSCEELDAFDARVRK-----EVAHPTYICELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F  
Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+
Sbjct: 171 VNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKGLK 228

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   
Sbjct: 229 YLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTV 288

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI
Sbjct: 289 KAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI 348

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
                        +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S
Sbjct: 349 -----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSCNS 396

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +  
Sbjct: 397 DLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAAN- 448

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F LGI
Sbjct: 449 ---LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGLGI 499

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++   
Sbjct: 500 RHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFATE 549

Query: 620 RNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            +   +       V+           + +    +V TG L++++R +A+  +  LGA V+
Sbjct: 550 GSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVT 609

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 610 GSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 648


>gi|332200505|gb|EGJ14577.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41317]
          Length = 648

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/699 (30%), Positives = 358/699 (51%), Gaps = 53/699 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++GG
Sbjct: 1   MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  I+
Sbjct: 58  KVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F  
Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+
Sbjct: 171 VNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKGLK 228

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   
Sbjct: 229 YLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTV 288

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI
Sbjct: 289 KAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI 348

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
                        +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S
Sbjct: 349 -----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSCNS 396

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +  
Sbjct: 397 DLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAAN- 448

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F LGI
Sbjct: 449 ---LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGLGI 499

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++   
Sbjct: 500 RHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFATE 549

Query: 620 RNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            +   +       V+           + +    +V TG L++++R +A+  +  LGA V+
Sbjct: 550 GSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVT 609

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 610 GSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 648


>gi|251782129|ref|YP_002996431.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390758|dbj|BAH81217.1| NAD-dependent DNA ligase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 652

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/702 (31%), Positives = 364/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L + ++ +   YY    P + DSEYD L R    + + +P+       + P   
Sbjct: 2   KKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQ---DSPTQN 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+     K +     +  E K+DG 
Sbjct: 59  VGGTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRV-----KSEFPDATYLAELKVDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G+    A RGDG  GE+++  ++ I  IP+VL    P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGQLQVGATRGDGSVGENITENLKQIKDIPQVL--PQPLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+E    G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q  
Sbjct: 172 FKAINEERQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLY--QEASPTTRSQQNH 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +  LGF VN     +++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLKALADLGFSVNQRHHLSSSMDEIWDFIQTVEAERDQLAYDIDGIVIKVNNLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ ++R  +  P   PS CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVSDKR-QEQVPMWIPSQCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS +V   +        A RC   L C +     L+HF SR+A NI GLG   ++  F 
Sbjct: 398 CQSDLVHFEDE------VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +          ++ G  + S   L  +I   ++ S E+ +F 
Sbjct: 450 ---LAGLVHDVADIYKLTKEDLL------HLDGIKEKSAEKLLAAIETSKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+GA+ +R + +     ++        IA           +  +G +IA+++V+++
Sbjct: 501 LGIRHIGAKASRLILETCGDIEHLLTVREEDIA----------TIDGLGMVIAKSLVQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           Q    I  VE      V+ +    + + ++E+    +V TG L+K+ R+ A+  +  LGA
Sbjct: 551 QQDSAILLVEELKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD++I G + GSKLEKAQ LG++I  EE    L
Sbjct: 611 KVTGSVSKKTDLVIAGSDAGSKLEKAQALGIRIEGEEWLEQL 652


>gi|33864448|ref|NP_896008.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
           9313]
 gi|81576658|sp|Q7V3Z9|DNLJ_PROMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33641228|emb|CAE22358.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9313]
          Length = 696

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/724 (29%), Positives = 348/724 (48%), Gaps = 61/724 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K  + L Q ++     YY    P + D+ YD L R    +      L     P+ P  +I
Sbjct: 10  KRAAELRQLLNQAAHSYYVLDTPTMEDAVYDRLYRELLNLEAKDSSLL---TPDSPTQRI 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ-----KKDDNSIFFTLEPK 133
           GG        V H IP LSL+  +N+++L  +  R+ +        K     +    E K
Sbjct: 67  GGAPAQGFASVQHRIPLLSLDNAFNVDELTGWYVRLAKLLGHQTNPKTPQPDLSMVGELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           IDG  + + YE G  + AA RGDG +GE+++A +R I +IP  L L + P  +EVRGE +
Sbjct: 127 IDGNALALSYEHGVLIRAATRGDGANGEEITANVRTIASIPLRLQLVHPPAWLEVRGEAF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           I  + F  +N      G   +ANPRNA +G LR+L+P  +  R L+FF + L       A
Sbjct: 187 IPNSTFADINTARGKRGDVAFANPRNACAGTLRQLDPKVVASRQLDFFAYTLHLPDNWQA 246

Query: 252 KGQ--------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           K          +  LQ ++ +GF VN           + +++      R  LPY  DG+V
Sbjct: 247 KAHDPARPMNQWAALQWLQAIGFKVNPNTALLADLTAVENFFKLWDEDRHQLPYATDGVV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+++  LQ+  G   ++PRW I+ K+A ++A ++LL +  Q+GRTG +TPVA  E + +
Sbjct: 307 VKLNDLQLQETAGFTQKAPRWAIALKYAAEEAPSKLLRLTCQVGRTGAVTPVAEFEAIPL 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ ATLHN + +  L           D+  GD ++V++AGE+IP+V+ ++   R  
Sbjct: 367 AGTSVSRATLHNANRVSEL-----------DLHSGDTIVVRKAGEIIPEVIGVLRELRPA 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            AQ    P  CP C+S +VR+ +       AA RC    +C A     L+H+VS+ A ++
Sbjct: 416 GAQTLKLPHICPECRSDLVREEDE------AATRCVNS-SCPAILRGTLRHWVSKGALDV 468

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG + ++           ++  AD++ L+     S  ++ +       S  NL  ++ 
Sbjct: 469 DGLGSKLIEQLVNR----GLVQSIADLYALEASLLASMDRMGS------KSTANLITALQ 518

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             ++    + ++ LGI HVG   A++LAK + S    A                +  V  
Sbjct: 519 ASKSKPWHKQLYGLGIHHVGEVNAKALAKKFPSAATLATAACKA-------PEQITSVFG 571

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--------IENKKLVFT 655
           VG+ IAQ++ +++  P N   +  L +         ++             +E +  V T
Sbjct: 572 VGNEIAQSLQQWFATPANQQLLAKLKQLGISLEANEDELAHDTDQNQRTVSLEGQTFVLT 631

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R +AQ  +   G  V+  +S+ T  ++ G   GSKL KA++L V ++N+E+ L
Sbjct: 632 GTLPTLSRSEAQALIEASGGKVNNSVSKNTSYVVAGVAAGSKLNKAEKLEVTVLNQEELL 691

Query: 716 FLLQ 719
            LL 
Sbjct: 692 KLLA 695


>gi|300870442|ref|YP_003785313.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
 gi|300688141|gb|ADK30812.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
          Length = 663

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/707 (33%), Positives = 385/707 (54%), Gaps = 48/707 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK++  L   I+YH+  YY    P I D EYD L R  + +   FP+L +    
Sbjct: 1   MNLEEARKKIEQLTATINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P NK+GG +     K  H I   SL  + N E+  +F  R+ +         I +T+E
Sbjct: 58  DSPTNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLEFDNRMQKELNAS---KIKYTVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + YEKGK   A+ RGDG  GE+V+  ++ +  +P+ +      I  VRGE 
Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMNNVPKSIKETKKLI--VRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            I+K DF  LN E   +   P+AN RNAASG LR+L+ ++   R L FF + +    +  
Sbjct: 173 LITKKDFEILNKEREELEEIPFANARNAASGGLRQLDSSESKKRRLKFFAYQIANYKDFD 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              +Y+ ++ +  LGF V  GV        ++  Y  ++  RS + Y+IDGLV KVD+  
Sbjct: 233 LTNEYKSMEFLSELGFTV-EGVHPNIDAKKVLETYYNIQEKRSKMDYEIDGLVIKVDDVK 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +R+PR+ ++ KF  ++  T L +I++Q+GRTG LTPVA+LEPV +GG  ++N
Sbjct: 292 YQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN + IK            +DIR+GD V+V R+G+VIPK+V +++ +R  D++ F F
Sbjct: 352 VTLHNPNEIKS-----------KDIRIGDTVVVIRSGDVIPKIVRVVLEKRPSDSKVFEF 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C                   RC     C ++    +++FVS+ A N+E +GK+ 
Sbjct: 401 PKKCPVCGGET------AVTDGDVIVRCINE-ECPSKITRYIEYFVSKPAMNMERIGKEW 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F KS      ++ PAD++ + R       ++      G+   + + +SI   +N +L
Sbjct: 454 IAVFTKS----GLVKTPADLYKITRDDLFKFERM------GEKLASYMLESIENSKNTTL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFI++LGIR VG   A  LAKY+ S +NF +   + +            +  +G+I A+
Sbjct: 504 KRFIYALGIRQVGETTADLLAKYFTSVENFKKATIDDLQ----------NIEGIGEISAK 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F  N + +  ++ LL      +      V S +  K +V TG+++   R  A+E  
Sbjct: 554 SIYDFLHNKKTLKLIDDLLDAGVNPVFEKLTTVESPLTGKNVVITGSIEGFTRTSAKETA 613

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +LGA V + +S+ TDI+IVG+  GSKL+KAQ+LG++IM  + F+ L
Sbjct: 614 ERLGATVQSAVSKNTDILIVGEKAGSKLKKAQELGIQIMEADDFIKL 660


>gi|168483195|ref|ZP_02708147.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00]
 gi|168492012|ref|ZP_02716155.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04]
 gi|221231854|ref|YP_002511006.1| DNA ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225854613|ref|YP_002736125.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae JJA]
 gi|254781427|sp|B8ZPV9|DNLJ_STRPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781431|sp|C1CEA4|DNLJ_STRZJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|172043461|gb|EDT51507.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00]
 gi|183573785|gb|EDT94313.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04]
 gi|220674314|emb|CAR68857.1| DNA ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225722247|gb|ACO18100.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae JJA]
 gi|332201605|gb|EGJ15675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47368]
          Length = 652

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 359/701 (51%), Gaps = 53/701 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVADSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + 
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKG 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG 
Sbjct: 231 LKYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +
Sbjct: 399 NSDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F L
Sbjct: 452 N----LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFA 551

Query: 618 NPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +       V+           + +    +V TG L++++R +A+  +  LGA 
Sbjct: 552 TEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 612 VTGSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|157150014|ref|YP_001450670.1| NAD-dependent DNA ligase LigA [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|190359295|sp|A8AY10|DNLJ_STRGC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157074808|gb|ABV09491.1| DNA ligase, NAD-dependent [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 652

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/702 (31%), Positives = 362/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +S L   ++ +   YY    P + DSEYD L R   ++   +P+      P  P ++
Sbjct: 2   KDRMSELVSLLNRYAHEYYTKDAPSVSDSEYDQLYRELVSLEEQYPNEIL---PESPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++  +L  F  R+ +     +     +  E KIDG 
Sbjct: 59  VGGKVLDGFEKYQHQYPLYSLQDAFSRAELVAFDERVRK-----EFPDASYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  IP  L+L  P  I VRGE Y+ K  
Sbjct: 114 SISLAYENGILVAGATRGDGSIGENITENLKRVKDIP--LTLPEPLTITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N      G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q +
Sbjct: 172 FDAVNQLRQENGEAEFANPRNAAAGTLRQLDTSVVAKRNLATFLY--QEASPTSEATQED 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+K+  LGF VN     A+T   +  +  ++   R  LPY+IDG+V KV+  + Q++LG
Sbjct: 230 VLEKLSQLGFSVNEKRVLASTIDQVWDFIEKVGQERDKLPYEIDGIVIKVNHLAAQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR  D V+V +AG++IP V+ ++  +R  D      PS CP 
Sbjct: 350 DYIR-----------EKDIRKDDTVIVYKAGDIIPAVLRVVEGKRVSDEH-LDVPSKCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++   +        A RC   L C AQ +E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CQSDLLHFEDE------VALRCINPL-CPAQIMEGLAHFASRDAMNISGLGPAVVEKLFA 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     +R  A I+ L             +  F + S   LY++I   ++ S E+ +F 
Sbjct: 451 KD----LVRDVAGIYRLNIEDLL------QLENFKEKSANKLYNAIQASKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + +    + AQ           +   ++ +  +G +IA+++  ++
Sbjct: 501 LGIRHVGSKASRILLEKFHDIPSLAQA----------EQEEIVSIDSLGMVIAKSLHSYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                   ++      V+ +    +    + +  K +V TG L+ + R +A+E + +LGA
Sbjct: 551 AQEGTQILLKELEEAGVNLAYLGEKAAADAVLSGKTVVLTGKLETLTRTQAKEKLLRLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD++I G + GSKL KAQ+LG++I +E     L
Sbjct: 611 NVAGSVSKKTDLVIAGADAGSKLAKAQELGIEIQDEAWLEQL 652


>gi|299067453|emb|CBJ38652.1| DNA ligase [Ralstonia solanacearum CMR15]
          Length = 813

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/833 (29%), Positives = 388/833 (46%), Gaps = 144/833 (17%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
            +   P    S E      ++L   ++ +   YY   +P + D+EYD L R  +A+    
Sbjct: 2   SKTEHPASGASPET---RAAALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEADH 58

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQK 120
           P+L     P+ P  ++GG +      V H +P LS+    +        F   + R    
Sbjct: 59  PEL---RTPDSPTLRVGGAVLPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRRELGL 115

Query: 121 KD-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS- 178
            + D  + +  E K DG  I +RYE+G  V AA RGDG +GEDV+  IR I  IP  L  
Sbjct: 116 AESDPPVEYAAELKFDGLAINLRYERGFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRP 175

Query: 179 --LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
               +P+++EVRGEVY+ ++DF  LN      G K + NPRN A+G +R+L+P     R 
Sbjct: 176 VDGAVPDVLEVRGEVYMRRDDFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERP 235

Query: 236 LNFFVHGLGKTSEI--FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           L+FF +GLG+ +      +    ML  +   GFPV+          G+V ++  + + R 
Sbjct: 236 LSFFAYGLGEAAGWSGMPETHSGMLDALVAYGFPVSKERAAVTGGEGLVQFHAAIGAKRD 295

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
           +LP+DIDG+VYKV+  +LQ++LG R R PRW ++HK+  ++A T +  I +Q+GRTG +T
Sbjct: 296 SLPFDIDGVVYKVNSLALQRELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAIT 355

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVARL PV +GG  +TNATLHNED ++            +D+RVGD V+V+RAG+VIP+V
Sbjct: 356 PVARLVPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEV 404

Query: 414 VDIIVNERHPD---------------AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           V +++  R  +                 PF  P  CP+C S VVR+         A  RC
Sbjct: 405 VAVVLERRPMEDMPGSDLFNPAQQPKHPPFELPKSCPVCGSHVVREEGE------AVARC 458

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           +GGL CSAQ+ E ++HF  R   +IEGLG++ +D   + E     +   AD+F L     
Sbjct: 459 SGGLFCSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELE----YVHGIADLFRLTLDDF 514

Query: 519 TSTTKIENIL-----------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG---- 563
               +  +                     NL D I   +   L RF+F+LGIRHVG    
Sbjct: 515 LEMKRRADERDGVTPETVAAGKIATKWAENLLDGIRASKTPPLARFLFALGIRHVGESTA 574

Query: 564 ----------------------------AEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                                       A +A ++A ++   +N  Q ++ ++A      
Sbjct: 575 KTLADWLGSLAVIRRAPAPLLLTLPDVGATVAEAIADFFAEPKN-QQALDALLAAGVAPQ 633

Query: 596 -----------------------------------------------LSLIRVPLVGDII 608
                                                          +   ++  +   +
Sbjct: 634 GEHAPSAKLREQLEPAALYAALGVPKLTAIRSKQLATLVPSLAQLAHVDTAQLEGLPADV 693

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKA 666
           + +++ + +   +   +  L    +  +       + E  +  K +V TGTL  + R +A
Sbjct: 694 SASLLSWLEADDHRAGLAQLEALRAELLAAMPAGAAEEGALSGKTVVLTGTLPTLSRDEA 753

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +   GA VS  +S+KTD ++ G+  GSKL +AQ+LGV++++E   L LLQ
Sbjct: 754 KAMLEAAGAKVSGSVSKKTDYVVAGEEAGSKLARAQELGVRVLDEAGMLALLQ 806


>gi|298369197|ref|ZP_06980515.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283200|gb|EFI24687.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314]
          Length = 830

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/835 (29%), Positives = 386/835 (46%), Gaps = 171/835 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIKHLTALLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L   N PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238

Query: 247 SEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              F A+   + L   + LGF + N           ++++Y +M+  R  LPY+IDG+V 
Sbjct: 239 QGGFVAEEHIQELAYFQELGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGTVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC S + R+        
Sbjct: 408 ETAVAVSDGLKHQQDDLFAETPSANQTQSVPLHKPYRLPTHCPICHSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYR 517

Query: 513 L------QRRQQTSTTKIENILGFGD-------------------VSVTNLYDSINKRRN 547
           L      + ++       EN  G  +                       N+   I   + 
Sbjct: 518 LDIPTLQKMKETADKGSSENENGDAETVSDDLSESNTQNGKKQPTKWAENILAGIEASKT 577

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------ 583
             L RF+F+LGIRHVG   A++LA+ + S ++  +                         
Sbjct: 578 PELARFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVARSIAHFFA 637

Query: 584 -------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE----- 614
                  I+ ++A         + +P                  + +  AQA+ E     
Sbjct: 638 QDAQQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKS 697

Query: 615 ----------------FYQNPRNICAVEALLKEVSPSIGRHEKNV-----SSEIENKKLV 653
                           +    +N   +E L    + +   ++  V     +  +  K  V
Sbjct: 698 IEGLQTDKALPADWQAWRSETQNAVLLENLKTFFAQTSSENQDEVFSDDLNEAVAGKTFV 757

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +
Sbjct: 758 LTGTLPILKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVAV 812


>gi|255324552|ref|ZP_05365669.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum
           SK141]
 gi|255298458|gb|EET77758.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum
           SK141]
          Length = 689

 Score =  692 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/718 (28%), Positives = 356/718 (49%), Gaps = 61/718 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E + L QE+  H + YY   +P I D+++DAL +R  A+    P+LA    P+ P  ++
Sbjct: 12  REWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLLALEEEHPELAV---PDSPTQQV 67

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G   ++    + H    +SL+ +++  +++ ++ R           +  +  E KIDG  
Sbjct: 68  GAAPSVG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKIDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVYIS 194
           I + Y  G+   AA RGDG  GE+++A  R I  IP  L+      +PE+IE+RGEVY+ 
Sbjct: 118 IDLVYRNGRLTTAATRGDGTVGEEITANARVIEDIPHELTGTAEYPVPELIEIRGEVYMR 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
             DF  +N+E  A G+  +ANPRNAA+G LR  +  ++  R L    HGLG         
Sbjct: 178 PEDFEEINEERAADGKDKFANPRNAAAGGLRMKDSAEVKKRRLKMVCHGLGAREGFSPTS 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q++  + +   G PV+   +Q ++   +          R    +++DGLV KVD+ + Q+
Sbjct: 238 QHDAYKAIAAWGLPVSPYTKQVHSAKEVQDEVAHWAEHRHDAIFEMDGLVVKVDDLASQR 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A +EPV + G+ +  ATL
Sbjct: 298 ALGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPYAVMEPVFVSGSTVEMATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+  +K            + + +GD V++++AGE+IP+V+  +  +R      ++FP  
Sbjct: 358 HNQSEVKR-----------KGVLIGDTVIIRKAGEIIPEVLGPVREQRDGSEHEWTFPEN 406

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C +++            A  RC    +C AQ   RL++  SR A +IE LG++    
Sbjct: 407 CPACGTKL-----APQKDGDADWRCPNTQSCPAQLSARLEYLASRKALDIEALGEKGAMD 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTST----------TKIENILGFGDVSV--TNLYDS 541
              +      +   +++F L  ++  ++           K     G   V+    NL ++
Sbjct: 462 LIDN----GILVDESELFELTAKKLLASDVYTAKKDTKDKRSKKEGNVKVNTAGQNLLNN 517

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + + +     R + SL IRHVG   AR+LA  Y S           +A           V
Sbjct: 518 LEEVKGRDFWRVLVSLSIRHVGPIAARALASRYGSMDKLRAAKTEELA----------EV 567

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG  IAQ+  ++++   +   V+             E++    +E   +V TG+L+  
Sbjct: 568 DGVGMTIAQSFHDWFEVDWHRTIVDKWAAAGVAMEVAAEEHKEQTLEGLTIVVTGSLENF 627

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R  A+E +   G   +  +S+KT  ++ G N GSK +KA++L + I+NE QF  LL+
Sbjct: 628 TRDSAKEAIVSRGGKATGSVSKKTSYLVAGANAGSKEDKARELDIPILNESQFQQLLE 685


>gi|148927169|ref|ZP_01810794.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1]
 gi|147887384|gb|EDK72833.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1]
          Length = 675

 Score =  692 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/717 (29%), Positives = 369/717 (51%), Gaps = 50/717 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    R+    L + +S +   YY   +P + D+ YD+L      +    P+L  +   
Sbjct: 1   MTKPHLRERAIKLRELLSQYSYEYYVLDRPSVADAIYDSLFGELKKLEAEHPELITA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       KV H    LSL  +++ E++  ++ R+ +   +  D  + F  E
Sbjct: 58  DSPTQRVGGVPIAKFQKVEHRTRMLSLNDVFSREEVEAWLLRVRKLAPEM-DEKVEFFAE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN------IPEII 185
            K+DG   ++ YE GK V A  RGDG  GEDV++ +R IP++P  L  N      +  I 
Sbjct: 117 VKMDGLACSLIYENGKLVRAVTRGDGLVGEDVTSNVRTIPSVPLALRTNKEDWRFLKGIT 176

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGE+ + K DF  LN ++   G+K YANPRN A+G +R+L+P  +  R L F  + L 
Sbjct: 177 EVRGEIVMFKKDFELLNAQLEQEGKKTYANPRNLAAGTIRQLDPRLVAQRKLYFLAYDLL 236

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +             + +R LGF  N   +   +   +V +    +  R  LPY+ DG+V 
Sbjct: 237 RDDPAEVPTWEMAYRIVRELGFRSNRDAKVIQSVDELVEFAESWEKKRFDLPYNTDGMVI 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+++ +L + LG   ++PR  I++K+  +QA+TR+ DI + IGRTG  TPVA LEPV I 
Sbjct: 297 KLNDRALYRALGVVGKNPRGAIAYKYPAEQATTRIKDIFVSIGRTGAATPVAMLEPVVIA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ +  ATLHNED +K            + + +GD V+V++AG++IP+V+  I   R+  
Sbjct: 357 GSTVQMATLHNEDEVKR-----------KGVLIGDTVVVQKAGDIIPEVISPIEKLRNGS 405

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            + F  P  CP C++ +VR          A  RC   + C A+    ++HF S+ A +I+
Sbjct: 406 EKAFKMPKNCPECETDLVRPEGE------AVWRCPNPI-CPAKTWRSIQHFASKAALDID 458

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G++ +         A  I+  AD++ L++       +I  +  F D+S   L D+I  
Sbjct: 459 GMGEKNVAALLD----AGLIKDAADLYVLKK------EQILELERFADISAGKLIDAIAA 508

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +++  L +F+F+LGIRHVGA+ A  +  ++ S     Q   +           L  V  V
Sbjct: 509 KKHPPLAKFLFALGIRHVGAQTAIDVTAHFGSLTAIRQATID----------QLHEVEGV 558

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+++A++IV ++++P +   ++   K         +      +     V TG+L  + R 
Sbjct: 559 GEVVAESIVAWFEDPEHQALLDKFEKYGVQPQDVKQAPTKGPLAGIHFVITGSLHSLDRE 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A + +  LG +    + + TD ++ GDN  GSKL KA++ G KI++E++   ++++
Sbjct: 619 EAADKIRALGGIFQTAVGKNTDYLVAGDNVGGSKLAKAEKFGTKIIDEQKLRDMIRE 675


>gi|313836700|gb|EFS74414.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA2]
 gi|314929893|gb|EFS93724.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL044PA1]
 gi|314972321|gb|EFT16418.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA3]
 gi|328907750|gb|EGG27514.1| NAD-dependent DNA ligase LigA [Propionibacterium sp. P08]
          Length = 740

 Score =  692 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/752 (27%), Positives = 336/752 (44%), Gaps = 74/752 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P + D+ YD L      +    P+L     P+ P
Sbjct: 18  AEARHRWTELAQRILDAQDAYYANDAPTMSDAAYDQLMVELKKVEDDHPEL---RSPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ I+  ++L ++++R+     K       F  E K
Sbjct: 75  TQRVGAPQRVTDFAPVEHLERLLSLDNIFTRDELSEWMSRVVAAVGKIPG----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  + + Y  G+ +  A RGDG  GEDV+A +R I  IP+ L   ++P ++EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLISGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFADLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTESRPLSMIVHGIGAVEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+  L
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVENADEVHDFVTHWGESRDEASHQIDGVVIKVDDVCL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGVTSRAPRWAIAYKYPPEEVNTELLDIRVSVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R    + FS P
Sbjct: 371 TLHNAFEVKR-----------KGVLLGDTVVLRKAGDVIPEILGPVVELRDGSEREFSMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +               RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DRCPSCGTEL-----AYEKDGDKDLRCPNAKGCPSQLRERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED---------------PAFSIRIPADIFTLQRRQQTSTTKI------------ 524
                 E+                   +   A +F LQ                      
Sbjct: 475 IALTDPENQRPQDEEAAEGLPERQTAVLSSEAGLFDLQPDDLAGVKVWRRRKVSGKLSPW 534

Query: 525 -----------ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                               +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSVPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  ++    +   V        
Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFDVEWHQEIVSRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     ++   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLKGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSK  KA+ LG  I++E  F +LL      +
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLDNGPQGV 736


>gi|325928155|ref|ZP_08189364.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118]
 gi|325541451|gb|EGD12984.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118]
          Length = 833

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/846 (29%), Positives = 409/846 (48%), Gaps = 164/846 (19%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + + +L + I   +  Y+   +P + D++YD L R  +A+  A P+LA     + P  +
Sbjct: 8   AQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---SADSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G        +V H++P LSL   ++ E++ +F+ RI       +     F+ EPK+DG 
Sbjct: 65  VGHLAASRFAEVRHALPMLSLGNAFSDEEVTEFVRRISERL---EVKQPLFSAEPKLDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P+++EVRGEVY+ + 
Sbjct: 122 AISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRA 181

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQ 254
            F A N +M A G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE    +  
Sbjct: 182 AFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTH 241

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L ++R  GFPV+  V       G+++YY  + + R  L +DIDG+VYK+D+ + Q++
Sbjct: 242 SAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQRE 301

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLH
Sbjct: 302 MGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLH 361

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ C
Sbjct: 362 NADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQC 410

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S++VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++  
Sbjct: 411 PVCGSQIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVL 464

Query: 495 FKSE-------------DPAFSIRIP-----ADIFTLQRRQQTSTTKIENIL-------- 528
             S              D    +R+         F  + R+  ++     +         
Sbjct: 465 VDSGLVKGVADLYLLSVDQLLQLRLISTAESPHAFLREAREHLASGAYAQLETSVVGIGV 524

Query: 529 -----------------------------GFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
                                                NL ++I   R+ +LERF+F+LGI
Sbjct: 525 DLAGERDVPQTWQADLLRAGLPRFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGI 584

Query: 560 RHVGAEIARSLAK-------------------------------YYLSYQNFAQEINNII 588
            HVG   A++L+                                ++       Q I++++
Sbjct: 585 EHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLL 644

Query: 589 ------------------AHNNDDWLSLIRVPLVGDIIAQ-------------------- 610
                             A +    L  + +P V  + AQ                    
Sbjct: 645 QRGVRIGDTHPPSPKLREALSFASVLEDMDIPKVTPVRAQQLAAAVDSFAALRTAGADAL 704

Query: 611 -----------AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
                      A++++   P N       +  ++ V   + + +   +  ++ + +V TG
Sbjct: 705 QQAGVPAPVVAALLQWLDRPENTALANAAQQAMETVLARLPQADALQTGPLDGQTVVITG 764

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L 
Sbjct: 765 TLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLA 824

Query: 717 LLQQYN 722
            L  + 
Sbjct: 825 FLGDHG 830


>gi|290957204|ref|YP_003488386.1| DNA ligase [Streptomyces scabiei 87.22]
 gi|260646730|emb|CBG69827.1| putative DNA ligase [Streptomyces scabiei 87.22]
          Length = 739

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/739 (30%), Positives = 358/739 (48%), Gaps = 64/739 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++ + L ++I  H   YY    P++ D+E+D L R  +A+   + +L     P+ P  K
Sbjct: 23  REKHARLAEQIEEHRFRYYVKDAPVVSDAEFDELLRTLEALEDEYGEL---RTPDSPTQK 79

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +  E    L +V H    LSL+ +++ E L  +  R+ +     D +      E KIDG 
Sbjct: 80  VAVEYETDLAEVEHRERMLSLDNVFDDEGLAAWAERVAKDVGTTDYH---LLCELKIDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196
            + + YE G+   AA RG G +GED++  +R I  IP  L  + +P ++E+RGEVY    
Sbjct: 137 AVNLTYEDGRLTRAATRGTGRTGEDITPNVRTIAEIPHRLKGDRVPRLVEIRGEVYFPME 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI--FAKG 253
            F  LN+  +A G KPYANPRN+ASG LR+ +P    T  L+  VHG+G           
Sbjct: 197 AFQGLNERRVAAGEKPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGALEGFDGGFTR 256

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E    +R  G P     R  +   G+  +       R ++ ++IDG V K+DE  LQ 
Sbjct: 257 LSEAYDLLRSWGLPTAEHNRVVDDLDGVREFIAYYGENRHSVAHEIDGAVVKLDEIRLQG 316

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  ATL
Sbjct: 317 RLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFATL 376

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFPS 432
           HN++ +K            +++ +GD V++++AG+VIP+++  +V+ R  +  +PF  P+
Sbjct: 377 HNQEVVKA-----------KNVLIGDTVVIRKAGDVIPEILGPVVDLRDENETRPFVMPT 425

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +         +     RC    +C AQ  ER+ +   R+  +IE  G     
Sbjct: 426 ECPECGTPL-----RPMKEGDIDLRCPNARSCPAQLRERVSYLAGRECLDIEHFGGVAAA 480

Query: 493 FFFKSEDPAF-SIRIPADIFTLQRRQQT-----------STTKI-------------ENI 527
              +  +PA   +    D+F L   +                K               N 
Sbjct: 481 ALTRPLEPADPPLVDEGDLFDLTVEKLLPIKAYVLDADSGLPKHDPKTGEPKVVTVFANQ 540

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            G    +   L   I + ++  L RF+  L IRHVG   A++LA+ + S     Q     
Sbjct: 541 KGEPKKNTLALLQKIEEAKSRPLARFLNGLSIRHVGPVAAQALAREFRSIDRIEQATQEE 600

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSS 645
           +            V  VG I+A+A+ E++    +   +        P    G  E     
Sbjct: 601 LTA----------VDGVGAIVAKALEEWFAEEWHREIIRKWKAAGVPLEDRGAGEDEGPR 650

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VG+NPGSK +KA QL 
Sbjct: 651 PLEGLTVVVTGTLEHHTRDGAKEALQNRGAKVTGSVSKKTSFVVVGENPGSKHDKAMQLK 710

Query: 706 VKIMNEEQFLFLLQQYNTT 724
           V ++NE+ F  LL+Q    
Sbjct: 711 VPVLNEDGFAVLLEQGPDA 729


>gi|320529157|ref|ZP_08030249.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399]
 gi|320138787|gb|EFW30677.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399]
          Length = 672

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/711 (30%), Positives = 355/711 (49%), Gaps = 44/711 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            I+  + EL+ L ++I  +   YY  +   I D E+D L  R  AI   +P+L      N
Sbjct: 3   DIQAVKAELAELRRQIRRYSKQYYDDNASDISDYEFDQLMLRLKAIEAEYPELITK---N 59

Query: 73  GPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P  K+GG     +   V H +P LSL+ +++  ++R F+  I   +      +  F +E
Sbjct: 60  SPTQKVGGSAQRTAGVLVKHDVPMLSLQDVFSEAEIRDFVAGICAHFP-----AAEFVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
            KIDG  + +RYE G    A  RGDG   GEDV+   R I  +   LS + P   EVRGE
Sbjct: 115 EKIDGLSLALRYENGVLARAVTRGDGIVQGEDVTENARMIADVREQLS-DAPVYFEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI 249
           VY+ +  F A+N+    +G KP+ANPRN A+G LR+L+      R L+ FV  L +T   
Sbjct: 174 VYMERAAFAAVNERQELLGLKPFANPRNCAAGTLRQLDARVTRERRLSMFVFNLQRTEGR 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                      MR  G  +  G R   T   + +   E+ + R +LPYDIDG V KV++F
Sbjct: 234 TFASHTASYDFMRAQGIKIIAGYRVCRTADEVWAAIEEIGARRGSLPYDIDGAVVKVNDF 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S + +LG  A++PRW I++K+  ++  T L +I++ +GRTG +TP A  +PV + G  + 
Sbjct: 294 SQRAELGATAKAPRWAIAYKYPPEEKETVLREIELSVGRTGRITPTAVFDPVQLCGTRVE 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+DYI GL           D+R+GD +LV ++GE+IP+V  +++ +R     P+ 
Sbjct: 354 RATLHNQDYIAGL-----------DVRIGDTILVYKSGEIIPRVKGVVLEKRPASTVPYV 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
               CP+C +  VR+ +       A  +C   + C AQ    + HFVSR A +I+G G  
Sbjct: 403 IGDTCPVCGAPAVREAD------TADMKCQNPV-CPAQVENHILHFVSRTAMDIKGFGTA 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +         A  +   ADI+TL   +      I + +   + +V  L D+I   +   
Sbjct: 456 AVIAL----THAGYLHDIADIYTLYEHRD---ELIASGIIGREKTVDKLLDAIAHSKENP 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +  LGI  +G   A SL + + S    A+           D   ++ VP +G++ A
Sbjct: 509 PDRLLTGLGIAGIGRAAAISLMQEFPSVDALAEA-------ARGDAEKILAVPDMGEVSA 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +++ EF+ +  +   +E         +    +   + +E K  V TGTL  + R +    
Sbjct: 562 RSLAEFFGSEASRGLLEKFRAAGVNFVSAPRERTGTALEGKSFVITGTLPTLSREECAAL 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +T  G  V   +S+KTD ++ G+  GSKL KA+ L + +++E     ++++
Sbjct: 622 ITAHGGTVKGSVSKKTDYLVAGEAAGSKLAKAESLDIPVLDEAALRRMIEE 672


>gi|311740579|ref|ZP_07714406.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304099|gb|EFQ80175.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 689

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/718 (28%), Positives = 352/718 (49%), Gaps = 61/718 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E + L QE+  H + YY   +P I D+++DAL +R  A+    P+LA    P+ P  ++
Sbjct: 12  REWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLLALEEEHPELAV---PDSPTQQV 67

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G   +     + H    +SL+ +++  +++ ++ R           +  +  E KIDG  
Sbjct: 68  GAAPSAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKIDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVYIS 194
           I + Y  G+   AA RGDG  GE+++A  R I  IP  L+      +PE+IE+RGEVY+ 
Sbjct: 118 IDLVYRNGRLTTAATRGDGTVGEEITANARVIEDIPHELTGTDEYPVPELIEIRGEVYMR 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
             DF  +N+E  A G+  +ANPRNAA+G LR  +P ++  R L    HGLG         
Sbjct: 178 PEDFEEINEERAADGKDKFANPRNAAAGGLRMKDPAEVKKRRLKMVCHGLGAREGFSPSS 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q++  + +   G PV+   +Q  +   +          R    +++DGLV KVD+ + Q+
Sbjct: 238 QHDAYKAIAAWGLPVSPYTKQVYSAKEVQDEVAHWAEHRHDAIFEMDGLVVKVDDLASQR 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A +EPV + G+ +  ATL
Sbjct: 298 ALGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPYAVMEPVFVSGSTVEMATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+  +K            + + +GD V++++AGE+IP+V+  +  +R      ++FP  
Sbjct: 358 HNQSEVKR-----------KGVLIGDTVIIRKAGEIIPEVLGPVREQRDGSEHEWTFPEN 406

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C +++            A  RC    +C AQ   RL++  SR A +IE LG++    
Sbjct: 407 CPACGTKL-----APQKDGDADWRCPNTQSCPAQLSARLEYLASRKALDIEALGEKGAMD 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTST----------TKIENILGFGDVSV--TNLYDS 541
              +      +   +++F L   +  ++           K     G   V+    NL  +
Sbjct: 462 LIDN----GILVDESELFELTAEKLLASDVYTAKKDTKDKRSKKEGNAKVNTAGQNLLSN 517

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + + +     R + SL IRHVG   AR+LA  Y S           +A           V
Sbjct: 518 LEEVKGRDFWRVLVSLSIRHVGPIAARALASRYGSMDRLRAAKTEELA----------EV 567

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG  IAQ+  ++++   +   V+             E +    +E   +V TG+L+  
Sbjct: 568 DGVGMTIAQSFHDWFEVDWHRTIVDKWAAAGVAMEVAAEDHKEQTLEGLTIVVTGSLENF 627

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R  A+E +   G   +  +S+KT  ++ G N GSK +KA++L + I+NE QF  LL+
Sbjct: 628 TRDSAKEAIVSRGGKATGSVSKKTSYLVAGANAGSKEDKARELDIPILNESQFQQLLE 685


>gi|258651684|ref|YP_003200840.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233]
 gi|258554909|gb|ACV77851.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233]
          Length = 736

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/719 (30%), Positives = 348/719 (48%), Gaps = 43/719 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A    + L Q I+     YY    P + D E+D + R  D +   +P L     P+ 
Sbjct: 20  PPEAAHRHAELTQIITDAQFRYYVLDAPTMSDGEFDTVLRELDGLEEQYPSL---RTPDS 76

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H+   LSL+ +++ ++L  ++ R  R         + +  E K
Sbjct: 77  PTQRVGGGFATEFGAVEHAERLLSLDNVFSADELAGWLARTAR----DAGTPVSWLTELK 132

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRG 189
           IDG  + + YE+G+ + AA RGDG  GEDV+  +R I  +P  L  +    +PE +E+RG
Sbjct: 133 IDGLAVNLTYERGRLIRAATRGDGRVGEDVTLNVRTIAAVPERLRDDGAHDVPEFVEIRG 192

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV+     F  LN  ++A G+ P+ANPRN+A+G LR+ +P    +R L    HG+G    
Sbjct: 193 EVFFPLEAFEELNASLVAAGKAPFANPRNSAAGSLRQKDPRVTASRRLTMLCHGIGARVG 252

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q +   ++R  G P+++  +   T   +          R  L +DIDGLV KVDE
Sbjct: 253 FDITRQSQAYDRLRSWGLPISDHNQVVQTEQEVADRIAYWAEHRHDLSHDIDGLVVKVDE 312

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++Q++LG  +R+PRW I++K+  ++A+T L DI + +GRTG +TP A LEPV I G+ +
Sbjct: 313 VAVQRRLGSTSRAPRWAIAYKYPPEEATTLLRDIQVNVGRTGRVTPFAVLEPVLIAGSTV 372

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QP 427
             ATLHN+D ++            + +++GD V+V++AG+VIP+++  +V+ R     + 
Sbjct: 373 GMATLHNQDEVRR-----------KGVQIGDTVVVRKAGDVIPEILGPVVDLREGRTLRE 421

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP C + +         +     RC    +C AQ  ER+ H   R AF+IEG+G
Sbjct: 422 FVMPTHCPECGTAL-----APAKENDVDIRCPNSRSCPAQLRERVFHLAGRGAFDIEGMG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +       +   A +I    DIF L   +           G    +   L  ++   ++
Sbjct: 477 YEA----AVALLAAGAITDEGDIFDLDEDRLLGVPLFTTKAGALSANGRKLLANLQICKD 532

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R + +L IRHVG   AR+LA+ + S           +A              VG  
Sbjct: 533 QPLWRVLVALSIRHVGPTAARALAQQFGSLPAIRAAAQEELAAAE----------GVGPT 582

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA A++E++    +   V+                    +    +V TG L    R +A+
Sbjct: 583 IADAVIEWFTVDWHRQIVDKWAAAGVRMQDEITDRPEQTLAGLSVVVTGGLDGFSRDEAK 642

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
             +   GA  +A +S KT  ++VGD+PGSK +KA  LGV I++E  F  LL++     R
Sbjct: 643 AALLSRGAKAAASVSAKTAFVVVGDSPGSKYDKALGLGVPILDEAGFRVLLERGPDAAR 701


>gi|297156986|gb|ADI06698.1| NAD-dependent DNA ligase LigA [Streptomyces bingchenggensis BCW-1]
          Length = 728

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/743 (30%), Positives = 354/743 (47%), Gaps = 62/743 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR + + L +++  H   YY    PI+ D+E+D L R  +A+            P+ 
Sbjct: 10  PAEARDKHAILAEQVEEHRFRYYVKDAPIVSDAEFDRLLRELEALEEE---YTELRTPDS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G       +V H    LSL+  ++ E+L  +  RI R      D+   F  E K
Sbjct: 67  PTQKVAGAYETEFTEVEHRERMLSLDNAFDGEELAAWAERIVRELG---DSGYHFLCELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YE+G+   AA RGDG +GED++  +R I  IP  L  + IPE++EVRGEVY
Sbjct: 124 VDGLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTISVIPDRLKGDRIPELVEVRGEVY 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G       
Sbjct: 184 FPGARFEELNARLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLRMVVHGIGAREGFDI 243

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS--IRSTLPYDIDGLVYKVDEF 309
             Q +  + +   G P     +  ++   +  Y         R +L ++IDG+V K+DE 
Sbjct: 244 DRQSQAYELLHEWGLPTAAHFKVVDSLDAVSEYIAYYGDPKRRHSLEHEIDGVVVKLDEI 303

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  +R+PRW I+ KF  ++ +T+L+DI + +GRTG +TP A +EPV + G+ + 
Sbjct: 304 PLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPFAVVEPVTVAGSEVE 363

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D +K            + + +GD V++++AG+VIP++V  +V+ R    + F 
Sbjct: 364 FATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSEREFV 412

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC     C AQ  ER+ +   R   +IE  G  
Sbjct: 413 MPAECPECGTPL-----QPMKEGDVDLRCPNARYCRAQIRERVYYLAGRKCLDIENFGYV 467

Query: 490 QLDFFFKSEDPAF-SIRIPADIFTLQRRQQTSTTKI------------------------ 524
                 +  DPA   ++   D+F L+  Q    T                          
Sbjct: 468 AAGALTQPLDPAEPPLKDEGDLFDLKVEQLLPITSYVLDPDSGLPKRDPKTGEEKVVTFF 527

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
            N  G    +   + D+I   +   L R I  L IRHVG   A +LA+ + S    A+  
Sbjct: 528 ANQKGEPKKNTLAMLDNIEAAKQRPLARIITGLSIRHVGPVAAAALAREFRSLDRIAEAS 587

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNV 643
              +A              VG  IA ++ +++    +   VE   +  V       E   
Sbjct: 588 EEELAAVE----------GVGPTIAASVKQWFAEDWHREIVEKWRRAGVLLEEEAPEDEG 637

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTLQ   R  A+E +   GA V+  +S+KTD ++VGDNPGSK +KA Q
Sbjct: 638 PRPLEGLTVVVTGTLQTHTRDGAKEALQNRGAKVAGSVSKKTDFVVVGDNPGSKYDKAMQ 697

Query: 704 LGVKIMNEEQFLFLLQQYNTTLR 726
           L V +++E+ F  LL+Q     R
Sbjct: 698 LKVPVLDEDGFTVLLEQGPEAAR 720


>gi|313903518|ref|ZP_07836909.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965]
 gi|313466339|gb|EFR61862.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965]
          Length = 817

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/649 (36%), Positives = 353/649 (54%), Gaps = 52/649 (8%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
            +R    + A  +E AR  + +L ++I +HD  YY   +P I D+ YDAL R+   +   
Sbjct: 43  AERPAEDVPA-DLEAARARVEALREQIRHHDYLYYVLDRPEIDDAAYDALMRQLRELEQR 101

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L     P+ P  ++GG       +V H+ P LSL+  ++ E+L  F  R+ R     
Sbjct: 102 FPELV---TPDSPTQRVGGRPAAPFARVEHAEPMLSLDNAFSREELEAFDQRVRRAVG-- 156

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-- 179
             + + +  E KIDG  I + YE G+FV  A RGDG +GEDV+A +R I ++P  L    
Sbjct: 157 --DDVAYVAELKIDGLSIALTYEGGRFVRGATRGDGEAGEDVTANLRTIRSLPLRLRDRE 214

Query: 180 -NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
             +P  +E+RGEVY++ + F  LN E  A G  P+ANPRNAA+G +R+L+P    +R LN
Sbjct: 215 RPVPRRVEIRGEVYMTFDAFRRLNQEQEARGLAPFANPRNAAAGSVRQLDPAVTASRSLN 274

Query: 238 FFVHGLG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
            +V+ L   +  E   + Q+E+LQ +R  G PVN   R+      + +Y +E    R  L
Sbjct: 275 LWVYALAGWEGDEPAPRSQWEVLQTLRAWGLPVNPHARRCTGLDELFAYIDEWAERRHQL 334

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           PY  DG+V KVD+   Q+QLG  ARSPRW I++KF  ++A TR+ DI + +GRTG LTPV
Sbjct: 335 PYLTDGIVIKVDDLEQQRQLGATARSPRWAIAYKFPAEKARTRVRDILVSVGRTGALTPV 394

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A L+PV + G  ++ A+LHN DYI+            +D+R+GD V+V +AGE+IP+VV+
Sbjct: 395 AVLDPVLLAGTTVSRASLHNADYIR-----------EKDVRIGDLVVVHKAGEIIPEVVE 443

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           ++   R    +PFS P  CP C S VVR          AA RC    AC AQQLER++HF
Sbjct: 444 VVKEARTGAERPFSMPERCPACGSPVVRVEGE------AATRCPNA-ACPAQQLERIRHF 496

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            SRDA +IEGLG   ++           +R  AD++ L+        ++      G  S 
Sbjct: 497 ASRDAMDIEGLGPAIIEQLVGR----GLVRDVADLYHLEPEPLAQLERM------GPKSA 546

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL  +I+  R   L R ++ LGIR VG  +A  LA+++ + Q        ++A   D+ 
Sbjct: 547 ANLVAAIDASRGRPLRRLLYGLGIRFVGERVAGLLARHFGTIQ-------RLMAAGPDEL 599

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              + VP +G  IA+++V F+++  N   +  L +    +     +  S
Sbjct: 600 ---MAVPEIGPRIAESVVIFFRDEHNRQLIRRLAEAGVEAAAGAPEPGS 645



 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 48/88 (54%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
                  V   +  K  VFTG L  + R +AQE V  LG   +  +SRKTD ++ G+  G
Sbjct: 728 WPDVPPEVRERVAGKTFVFTGGLASMTRDEAQELVEALGGRATGSVSRKTDYVVAGEGAG 787

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           SKL +A++LG+ +++E  FL L+ +   
Sbjct: 788 SKLARARELGIPVLDEAAFLRLVGREPA 815


>gi|256824829|ref|YP_003148789.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547]
 gi|256688222|gb|ACV06024.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547]
          Length = 770

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/759 (27%), Positives = 350/759 (46%), Gaps = 79/759 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R +   L + +  H   YY   +P I D+++DAL R  + +    P L     P  P
Sbjct: 37  EGVRHQWDDLARRVREHRFAYY-LGRPTISDADFDALFRELEQLESEHPGL---RTPESP 92

Query: 75  LNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G  +       V H+   LSL+ +++ E+L  +  R        D   + +  E K
Sbjct: 93  TQEVGAPVFETGFDAVDHAERMLSLDNVFSSEELAAWFQRARDAAGTTD---LHYLCELK 149

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------------SLNI 181
           IDG  + + YE G  V AA RGDG +GED++  +R I  +P  L            ++++
Sbjct: 150 IDGLAVNLTYEDGVLVRAATRGDGRTGEDITLNVRTIQGVPHRLERPADLADDATATVDV 209

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
           P ++EVRGEV++    F  LN   +  G+  +ANPRNAA+G LR+ +P    +R L   V
Sbjct: 210 PPLVEVRGEVFLPLEKFAELNARQVEAGKAAFANPRNAAAGSLRQKDPRVTASRPLRMIV 269

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           HG+G         Q E  + +   G PV +  +  +T   I  Y       R    +++D
Sbjct: 270 HGIGAREGFDIARQSEAYEVLAGWGLPVTSHAKVLDTLEEIEQYVAYWGGHREGAEHELD 329

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+DE ++Q+QLG  +R+PRW I+ K+  ++ +T+LLDI + +GRTG +TP   +EP
Sbjct: 330 GIVIKIDEVTVQRQLGSTSRAPRWAIAWKYPPQEVTTKLLDIAVNVGRTGRVTPFGVMEP 389

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ ++ ATLHN   ++            + + +GD V++++AG+VIP+++  + + 
Sbjct: 390 VTVAGSTVSMATLHNAHEVQR-----------KGVLIGDTVVLRKAGDVIPEILGPVADL 438

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R      F  P+ CP C + +         +     RC    +C +Q  ERL     R A
Sbjct: 439 RDGSETAFVMPTHCPSCGTEL-----APAKEGDKDIRCPNSRSCPSQLRERLFGLAGRGA 493

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL------------ 528
           F+IE LG +           A  +   A +F L       T+                  
Sbjct: 494 FDIESLGWEGAGALLD----AGVLTDEAGVFDLTAEDLLRTSLYTRAAKKAEAAAAEEGD 549

Query: 529 -------------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
                                 L D++ + +   L R + +L IRHVG   AR+LA ++ 
Sbjct: 550 PEGVLPPGGVVDGRVLSAVGVRLLDNLQQVKEQPLWRVLVALSIRHVGPTAARALAGHFA 609

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNICAVEALLKEV 632
           + +         +A           V  VG  IA+A+ E++    N  +   V+      
Sbjct: 610 TMEAIRAASTEELAA----------VEGVGPTIAEAVTEWFGGEGNGWHRQIVDTWAAAG 659

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                  ++++   +E   +V TG+L+   R +++E +   G   S  +S+KTD ++VG 
Sbjct: 660 VRMADERDESIERTLEGLTVVVTGSLEGWSRDESKEAILTRGGKASGSVSKKTDYVVVGA 719

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           N GSK  KA++LG+ I++EEQF  LL          +DD
Sbjct: 720 NAGSKATKAEELGLPILSEEQFGELLATGRVEGVTPEDD 758


>gi|325267489|ref|ZP_08134142.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
 gi|324981014|gb|EGC16673.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
          Length = 804

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/800 (30%), Positives = 374/800 (46%), Gaps = 131/800 (16%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
            A ++   +  + +L Q ++ +   YY    P + D+EYD L R  + +   +P      
Sbjct: 21  AACTMSTPQHRIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELETLEAEYPQFRL-- 78

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQ 119
            P  P  ++GG +      V H++P LSL   ++            +   F  R+ +   
Sbjct: 79  -PESPTQRVGGAVLDGFETVVHAVPMLSLNNAFSPRDDETGAFGHAEFLAFDERVCKELG 137

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-S 178
                 + +  EPK DG  +++ Y+ G  V AA RGDG +GE+V+  I+ +  IP  L  
Sbjct: 138 ---VAQVEYAAEPKFDGLAVSLLYQNGILVQAATRGDGTTGENVTENIKTVRNIPLKLHG 194

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237
              P ++EVRGEV + K DF ALN   +  G+KP+ANPRNAA+G LR+L+      R L+
Sbjct: 195 EKQPALLEVRGEVLMLKADFAALNQRQLEAGQKPFANPRNAAAGSLRQLDSKITAQRKLH 254

Query: 238 FFVHGLGKTSEI--FAKGQYEMLQKMRCLGFPVNNGVR-QANTFHGIVSYYNEMKSIRST 294
           FF +G+ + S +    +   E L  +  LGF +  G          ++  Y  +   R  
Sbjct: 255 FFAYGIAQLSGVERLPESHMEELALLHELGFSLPEGYFGTHTGAAAVLREYERLAEHRPR 314

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPY+IDG+V KV+  + Q+QLG  +R+PRW I+HKF  ++A T +  ID+Q+GRTG +TP
Sbjct: 315 LPYEIDGMVVKVNSLAEQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGAITP 374

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV
Sbjct: 375 VARLAPVFVGGVTVTNATLHNQDEVAR-----------KDVRVGDTVVVRRAGDVIPEVV 423

Query: 415 DIIVNERHPD------------AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
            +++  R                +PF  P  CP+C S V R+         A  RCTGG+
Sbjct: 424 RVLLERRPMQPVDLLGEQMEAKYEPFRLPETCPVCGSAVEREAGE------AVARCTGGM 477

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522
            C AQ+ + L HF SR A +I GLG +Q++        A  +   ADI+ L   Q  +  
Sbjct: 478 LCQAQRAQGLIHFASRKAMDIAGLGDKQIEALV----AADVLHSFADIYRLDIAQLQTIK 533

Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK---------- 572
             ++          N+ DSI + R   L RF+F+LGIRHVG   A+ LA           
Sbjct: 534 DSKS---AATKWAQNILDSIAQSRTPPLARFLFALGIRHVGESTAKQLAAAFGNLDTVRR 590

Query: 573 ---------------------YYLSYQNFAQEINNIIAH--------------NNDDWLS 597
                                +Y       + +++++ H              +      
Sbjct: 591 APEPILACLPDIGSIVAHAIAHYFKQPAQQKMLDDLLQHVAPQAAAPSPQTRAHAAPEQW 650

Query: 598 LIRVPLV--------------GDIIA--------QAIVEFYQNPRNICAVEALLKEVSPS 635
           L R+P +              G + A        Q   ++ + P +   ++ +       
Sbjct: 651 LQRLPNIKLSEKRAAELWQLAGSLHALQTDQALPQEWQDWRKQPAHAALLQEITAFTEAL 710

Query: 636 IGRHEKNVS-------SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
                  VS       S I  K  V TGTL  ++R +A   +   G  VS  +S+KTD +
Sbjct: 711 PESSTDGVSGSLHPEHSPIAGKTFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFV 770

Query: 689 IVGDNPGSKLEKAQQLGVKI 708
           + G+  GSKLEKAQ LGV +
Sbjct: 771 VAGEAAGSKLEKAQALGVAV 790


>gi|62185205|ref|YP_219990.1| NAD-dependent DNA ligase LigA [Chlamydophila abortus S26/3]
 gi|81312632|sp|Q5L5Q2|DNLJ_CHLAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|62148272|emb|CAH64037.1| putative DNA ligase [Chlamydophila abortus S26/3]
          Length = 660

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/702 (34%), Positives = 386/702 (54%), Gaps = 50/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++  SL ++I   D  YY    P I D +YD   R+  +I    P+         P  +
Sbjct: 7   REQYISLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLW---SPSMR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   + S   V H+ P LS+   + +E+L +F +RI +           +TLE KIDG 
Sbjct: 64  LGDRTSGSFPIVAHAHPMLSIANAYTLEELYEFFSRIEKTLGYTP----KYTLEIKIDGI 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYE+   V A  RG+G  GED++A IR I ++P  LS   PE +EVRGEV+ S+  
Sbjct: 120 AVAIRYEQRVLVQALSRGNGRKGEDITANIRTIRSLPLRLSKEAPEFLEVRGEVFFSRAT 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N       +  +ANPRNAA G L+ L+  +   R L   ++  G  +E   +  YE
Sbjct: 180 FCQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQRNLEISIY--GSLAEENKRSHYE 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L   +  GFPV    RQ  T   +V+  +E++  R+ LP +IDG+V KVD+   QK LG
Sbjct: 238 NLLLCKEWGFPVFGQPRQCQTIEKVVASLHEIEVARAQLPMEIDGVVIKVDDIEDQKVLG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+  RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+ ++ A+L+NE
Sbjct: 298 MTAKHYRWALAYKYAPERAETILEDIIVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNE 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V V++ GE+IP+VV + + +R    QP+  P +CP+
Sbjct: 358 DEIER-----------KDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGTQPWVMPEYCPV 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  +V R+ +        + RCT  L CSA  +E+++ F  RDA +I+ LG++ +   F 
Sbjct: 407 CHQKVTRESDK------VSVRCTNSL-CSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFD 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I    DIF +             + GF D S+ N+  SI K +++ L+RFI +
Sbjct: 460 LGC----IHRRCDIFQITEEDL------RQVPGFKDKSIRNVLKSIEKAKSVPLDRFITA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A +LA+++LS +       +++A + DD      +  +GD +A++IV ++
Sbjct: 510 LGIPYVGIGGANALAQHFLSLE-------SVMAASLDDL---KAIEGIGDKVAESIVAYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             P ++  ++ +L      +       SS    K  V TGTL+K+ R +A+ Y+   G  
Sbjct: 560 HQPEHLEEIQKMLSLGVHIL--PCHRASSSCLGKAFVITGTLEKLTRSEAETYIRNCGGK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V + +S+ TD ++VG +PGSKL++AQ+LGV I++E++ L LL
Sbjct: 618 VGSSVSKNTDYLVVGQDPGSKLKRAQELGVPILSEDELLKLL 659


>gi|295111571|emb|CBL28321.1| DNA ligase, NAD-dependent [Synergistetes bacterium SGP1]
          Length = 683

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/703 (32%), Positives = 359/703 (51%), Gaps = 45/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
              ++ L +E+++H   YY    P I D+EYDAL R    +  A PD  R   P+ P  +
Sbjct: 18  AARMAELYEELAHHARLYYDEDAPEIPDAEYDALVRELAELERAHPDRVR---PDSPTRR 74

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     KV H  P LSL+ +++  +L  F+ RI        ++   FT E KIDG 
Sbjct: 75  VGGTVLEGFEKVRHERPMLSLDNVFSAGELSSFLERIR---GDVPEDDWTFTCEMKIDGL 131

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ YE G+FV  A RGDG  GEDV+  +R + T+P  L       +EVRGEV ++ + 
Sbjct: 132 AVSLLYEDGRFVRGATRGDGRVGEDVTENLRTLRTLPMRLKGAPAGRVEVRGEVLMTWDR 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN+    +G  P+ANPRNAA+G +R+L+   +  R L+ F++ L     +    Q +
Sbjct: 192 FNALNERREELGEPPFANPRNAAAGTMRQLDSRIVAERGLDAFLYYLVDAPSLGVTRQGD 251

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +   G P+    R+  +     ++  E +  R +LPY  DG V K+D+ +L   LG
Sbjct: 252 ALEWLAERGLPIQPAWRRCASLAEAEAFIVEWQERRFSLPYVTDGAVVKLDDLTLWDGLG 311

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A +PRW +++K+  ++A TR+L ID+ +GRTG LTPVA LEPV + G ++  A LHNE
Sbjct: 312 ATAHAPRWAVAYKYPPEEARTRILSIDVSVGRTGALTPVANLEPVRLAGTVVQRAGLHNE 371

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+  D     +   R           +A E+IP+VV +    R    +PF  P  CP 
Sbjct: 372 DEIRRKDVRVGDVVRVR-----------KAAEIIPEVVAVEKECRTGAERPFEMPERCPA 420

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S  VR  +       A  RC    +C AQ  E L++F SR   +I GLG++  +    
Sbjct: 421 CGSEAVRLPDE------AVLRCPNRASCPAQLKEGLRYFASRAGLDIRGLGERLAEQLID 474

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           S      ++  +D++ L      S  ++      G+ S  NL  ++   ++  L   I +
Sbjct: 475 SGR----VKTLSDVYDLPEEDWASLDRM------GEKSARNLMGALEASKDRPLSALIAA 524

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A  LA+ + S    +      IA           V  VG +IA ++  F+
Sbjct: 525 LGIRFVGRRVAELLAERFGSMDALSAASEAEIA----------DVEGVGPVIASSVEAFF 574

Query: 617 QNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++  N+  VE L +  ++ S G    +  +E+E K  VFTG L  ++R +A+  V   G 
Sbjct: 575 RDEANLALVERLRERGLNFSSGDAAGHEGTELEGKSFVFTGELSSMKRAEAEALVRAHGG 634

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             S  +S KT  ++ G   GSK  +A++LGV I++EE FL ++
Sbjct: 635 SASGSVSSKTSFLVAGAGGGSKRRRAEELGVPIVSEEDFLRMI 677


>gi|220904693|ref|YP_002480005.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254781312|sp|B8J0Q0|DNLJ_DESDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219868992|gb|ACL49327.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 712

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/729 (32%), Positives = 377/729 (51%), Gaps = 62/729 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+ +  L  E+  H+  Y+   +P I D ++DAL R    +   +P+L      + P 
Sbjct: 24  EERRRVQWLTAELERHNHLYHTLDRPEISDDQFDALFRELQDLETRWPEL---RSLHSPT 80

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF--FTLEPK 133
            ++GG +   L K  HS+    L+ +++    ++F  R+ R W    +  +   F  +PK
Sbjct: 81  LRVGGGLLEGLAKKAHSLQMYGLDNVFSAGQWQEFAERMARAWGGDVNGPLPESFWCDPK 140

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEV 191
           +DG  + I Y  G    A  RGDG  GE V+  +R I T+P  L      P  +EVRGEV
Sbjct: 141 LDGLALEIIYADGVLQEALTRGDGEVGEVVTDAVRTIRTVPLRLAGPGPFPARLEVRGEV 200

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
            + KNDF  LN++  A+G K +ANPRNAA+G LR+L+   I +R L F  + LG+     
Sbjct: 201 VMYKNDFAVLNEKQEALGLKTFANPRNAAAGTLRQLDTAIIGSRPLRFLAYSLGQALWTP 260

Query: 251 AK---GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           A     Q E++ ++R  GF      R  ++   +  Y   ++  R+  P +IDG V K+D
Sbjct: 261 APVCLLQSEVMSRLREYGFLTPPDGRLCSSVAEVEEYAQWVREHRAAFPMEIDGAVAKLD 320

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q+ LG  AR+PR+ ++ KF  + A T L DI+IQ+GRTG+LTPVA LEPV++GG +
Sbjct: 321 NLEAQQALGFTARAPRFAVAFKFPAELAQTLLKDIEIQVGRTGVLTPVAMLEPVSVGGVM 380

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED I+            RD+RVGD V+V+RAG+VIP+VV  ++ +R  +A+ 
Sbjct: 381 VSRATLHNEDEIRN-----------RDVRVGDTVMVRRAGDVIPEVVGPVLEKRPENARE 429

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP  CP C     R+         AA RC   +ACSA +L  + HFVS+   +I G+G
Sbjct: 430 YVFPHTCPACGQPAYREEGE------AAWRCEN-MACSAIRLRAITHFVSKAGLDIAGVG 482

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR-R 546
           ++ ++    S      ++ PAD+FTL  ++     ++      G+V      D++ +   
Sbjct: 483 QKWIEQLVTSGR----VQSPADLFTLTVQELLGFERM------GEVLAHKFVDALARAVH 532

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +L R I +LGIRHVG + AR+LA ++ +           +          + +P VG 
Sbjct: 533 SATLPRLISALGIRHVGEQTARTLALHFETLDELENAGAETL----------LSLPDVGP 582

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP-----------SIGRHEKNVSSEIENKKLVFT 655
            +A +I  F+ +P N   +E                            S  +  K ++FT
Sbjct: 583 EVASSIHNFFNSPANREQLERFRALGLWPRGGRSGGGSSGSTGEGGLASGPLAGKNILFT 642

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R +A++     GA     +S+K D ++ G+  GSKLEKAQ LGV ++ EE+F+
Sbjct: 643 GTLS-MPRSEAEKLAETAGATPLGGVSKKLDYLVAGEKAGSKLEKAQALGVTVLTEEEFM 701

Query: 716 FLLQQYNTT 724
            +L++    
Sbjct: 702 TMLREAKAA 710


>gi|317125504|ref|YP_004099616.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043]
 gi|315589592|gb|ADU48889.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043]
          Length = 715

 Score =  690 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/737 (29%), Positives = 354/737 (48%), Gaps = 56/737 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE    ++   E + L +  S     Y+    P I D+EYD L RR +A+   +P L   
Sbjct: 10  IEDAIPDEVHHEWADLAERASAAQFAYHVKDAPTISDAEYDGLIRRLNALEAQWPSL--- 66

Query: 69  EDPNGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
             P+ P  K+G          V H    LSL+  ++ E+LR +  R+ R           
Sbjct: 67  RTPDSPTQKVGASAFATGFETVDHLERMLSLDNAFSFEELRAWAERVEREVGAGAH---- 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           F  E KIDG  + + YE+G+ V A  RGDG +GEDV+  +R I  +P  L   ++PE++E
Sbjct: 123 FLTELKIDGLAVNLLYEQGRLVRALTRGDGRTGEDVTNNVRTIEGVPERLSGDDVPELVE 182

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           +RGEV+     F  LN  ++A G+ P+ANPRNAA+G LR+ +P     R L   VHG+G 
Sbjct: 183 IRGEVFFPTAGFADLNAALVAAGKAPFANPRNAAAGSLRQKDPKVTAGRPLRLLVHGIGA 242

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q E    +R  G P ++ V+  +    +  +       R    ++IDG+V K
Sbjct: 243 RRGFDIARQSEGYAALRSWGLPTSDQVKVLDDIADVEEFVTFHGEHRHDGLHEIDGIVVK 302

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VDE +LQ+QLG  +R+PRW I+ K+  ++ +TRLLDI + +GRTG +TP   ++PV + G
Sbjct: 303 VDEVTLQRQLGATSRAPRWAIAFKYPPEEVNTRLLDIRVNVGRTGRVTPYGVMQPVVVAG 362

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN+  ++            + + +GD V++++AG+VIP++V  +V+ R    
Sbjct: 363 STVEQATLHNQHEVER-----------KGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSE 411

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF  P+ CP C +++         +     RC    +C +Q  ER+    SR A +IE 
Sbjct: 412 RPFVMPTQCPSCGTQL-----APEKEGDKDIRCPNSRSCPSQLRERVFALASRSALDIEA 466

Query: 486 LGKQQLDFFFKSE---DPAFSIRIPAD-----IFTLQRRQQTSTTKIENIL--------- 528
           LG +      +S    D       P D      + + R +  +                 
Sbjct: 467 LGWEGSIALLESGILTDEGDLFAPPEDSPEAGAYGVTRERLAAVGLYTRAAKRTDDPAHV 526

Query: 529 ---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                   +   L   + K +   L R + +L IRHVG   AR+LA  + S     +   
Sbjct: 527 VDGRVLSANGEKLLAELEKAKTQPLWRVLVALSIRHVGPTAARALATTFGSMDAIRRASI 586

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
             +A              VG IIA+++  ++    +   V              + +V+ 
Sbjct: 587 EELA----------EAEGVGQIIAESVTAWFAVDWHAEIVRKWAAARVRMEDEVDASVAR 636

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +E + +V TG+L+   R + +E +   G   +  +SRKTD ++VG N GSK  KA++LG
Sbjct: 637 TLEGRTVVVTGSLEGFSRDETKEAILSRGGKAAGSVSRKTDWVVVGANAGSKAAKAEELG 696

Query: 706 VKIMNEEQFLFLLQQYN 722
           +++++E QF+ LL+  +
Sbjct: 697 LRVLDEAQFVRLLETGS 713


>gi|306835907|ref|ZP_07468900.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726]
 gi|304568181|gb|EFM43753.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726]
          Length = 689

 Score =  690 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/723 (29%), Positives = 357/723 (49%), Gaps = 61/723 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +    ++E + L QE+  H + YY   +P I D+++DAL +R   +    P+LA    P+
Sbjct: 6   NPADVQREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLMDLEKQHPELAV---PD 61

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G   N     + H    +SL+ +++  +++ ++ R           +  +  E 
Sbjct: 62  SPTQQVGATPNAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTEL 111

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVR 188
           KIDG  I + Y  G+   AA RGDG  GE+++A  R I  IP  L+      +PE+IE+R
Sbjct: 112 KIDGLSIDLVYRNGRLDTAATRGDGTVGEEITANARVISDIPHELTGTDEYPVPELIEIR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GEVY+   DF  +N+E  + G+  +ANPRNAA+G LR  +P ++  R L    HGLG   
Sbjct: 172 GEVYMRPEDFEEINEERASDGKARFANPRNAAAGGLRMKDPAEVKKRRLRMVCHGLGARE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q++  + +   G PV+    Q ++   +    +     R    +++DGLV KVD
Sbjct: 232 GFSPSSQHDAYKAIAAWGLPVSPYTTQVHSAAEVQKEVSYWAEHRHDAIFEMDGLVVKVD 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q+QLG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A +EPV + G+ 
Sbjct: 292 DLGSQRQLGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPFAIMEPVFVSGST 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN+  +K            + + +GD +++++AGE+IP+V+  +  +R      
Sbjct: 352 VSMATLHNQSEVKR-----------KGVLIGDTIIIRKAGEIIPEVLGPVREQRDGSEYE 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +SFP+ CP C + +            A  RC    +C AQ   RL++  SR   +IE LG
Sbjct: 401 WSFPTQCPACGTTL-----APQKDGDADWRCPNTQSCPAQLSARLEYLASRKGLDIEALG 455

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST----------TKIENILGFGDVSVT- 536
           ++      ++      +   +++F L   +  ++           K     G   V+   
Sbjct: 456 EKGAMDLIEN----GILTDESELFELTEEKLLASDVYTAKRDTKDKRSKKEGNVKVNTAG 511

Query: 537 -NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL  ++ + ++    R + SL IRHVG   AR+LA  Y S +         +A      
Sbjct: 512 KNLLQNLEEVKDRDFWRVLVSLSIRHVGPIAARALAARYGSMEKLRAAKTEDLA------ 565

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
                V  VG +IA++   +++   +   VE   +         E      +E   +V T
Sbjct: 566 ----EVDGVGAVIAESFHAWFEVDWHRTIVEKWAEAGLAMEVAAEDRKEQTLEGLTIVVT 621

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G+L+   R  A+E +   G   +  +S+KT  ++ G N GSK +KA+ LGV I+NEEQF 
Sbjct: 622 GSLEDFTRDSAKEAIISRGGKATGSVSKKTSYLVAGANAGSKEDKARDLGVPILNEEQFH 681

Query: 716 FLL 718
            LL
Sbjct: 682 TLL 684


>gi|78047224|ref|YP_363399.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123744002|sp|Q3BV14|DNLJ_XANC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78035654|emb|CAJ23345.1| DNA ligase [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 833

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/846 (29%), Positives = 408/846 (48%), Gaps = 164/846 (19%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + + +L + I   +  Y+   +P + D++YD L R  +A+  A P+LA     + P  +
Sbjct: 8   AQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---SADSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G        +V H++P LSL   ++ E++ +F+ RI       +     F+ EPK+DG 
Sbjct: 65  VGHLAASRFAEVRHALPMLSLGNAFSEEEVTEFVRRISERL---EVKQPLFSAEPKLDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P+++EVRGEVY+ + 
Sbjct: 122 AISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRA 181

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQ 254
            F A N +M A G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE    +  
Sbjct: 182 AFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTH 241

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L ++R  GFPV+  V       G+++YY  + + R  L +DIDG+VYK+D+ + Q++
Sbjct: 242 SAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQRE 301

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLH
Sbjct: 302 MGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLH 361

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ C
Sbjct: 362 NADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQC 410

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S++VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++  
Sbjct: 411 PVCGSQIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVL 464

Query: 495 FKSE-------------DPAFSIRIP-----ADIFTLQRRQQTSTTKIENIL-------- 528
             S              D    +R+         F  + R+  ++     +         
Sbjct: 465 VDSGLVKGVADLYLLSVDQLLQLRLISTAESPHAFLREAREHLASGAYAQLETSVVGIGV 524

Query: 529 -----------------------------GFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
                                                NL ++I   R+ +LERF+F+LGI
Sbjct: 525 DLAGERDVPQTWQADLLRAGLPRFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGI 584

Query: 560 RHVGAEIARSLAK-------------------------------YYLSYQNFAQEINNII 588
            HVG   A++L+                                ++       Q I++++
Sbjct: 585 EHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLL 644

Query: 589 ------------------AHNNDDWLSLIRVPLVGDIIAQ-------------------- 610
                             A +    L  + +P V  + AQ                    
Sbjct: 645 QRGVRIGDTHPPSPKLREALSFASVLEDMDIPKVTPVRAQQLAASVDSFAALRTAGADAL 704

Query: 611 -----------AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
                      A++++   P N       +  ++ V   + + +   +  ++ + +V TG
Sbjct: 705 QQAGVPAPVVAALLQWLDRPENTALANAAQQAMETVLARLPQADALQTGPLDGQTVVITG 764

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I  E + L 
Sbjct: 765 TLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWGEARLLA 824

Query: 717 LLQQYN 722
            L  + 
Sbjct: 825 FLGDHG 830


>gi|183603490|ref|ZP_02717204.2| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06]
 gi|183576581|gb|EDT97109.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06]
          Length = 648

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/699 (30%), Positives = 358/699 (51%), Gaps = 53/699 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++GG
Sbjct: 1   MNELVALLNRYATEYYTSDNPSVADSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  I+
Sbjct: 58  KVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F  
Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+
Sbjct: 171 VNQVRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKGLK 228

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   
Sbjct: 229 YLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTV 288

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI
Sbjct: 289 KAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI 348

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
                        +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S
Sbjct: 349 -----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEK-LDIPTNCPSCNS 396

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F +  
Sbjct: 397 DLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAAN- 448

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               ++  ADI+ LQ              G  + S   LY +I   +  S E+ +F LGI
Sbjct: 449 ---LVKDVADIYRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGLGI 499

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++   
Sbjct: 500 RHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFATE 549

Query: 620 RNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            +   +       V+           + +    +V TG L++++R +A+  +  LGA V+
Sbjct: 550 GSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVT 609

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 610 GSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 648


>gi|254523079|ref|ZP_05135134.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14]
 gi|219720670|gb|EED39195.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14]
          Length = 821

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/850 (30%), Positives = 409/850 (48%), Gaps = 168/850 (19%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  +  +    L ++I+  +  Y++   P I D +YD + R  +A+    P+LAR+   
Sbjct: 1   MSP-RPAERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G   +    +V H++P LSL   ++ E++  F+ RI     ++   S+ F+ E
Sbjct: 57  DSPTQQVGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRR---SLQFSAE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I++RYE+G FV  A RGDG +GEDV+A +R I  IP+ L   + P+++EVRGE
Sbjct: 114 PKMDGLAISLRYEEGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           VY+++ DF A N+     G K  ANPRNAA+G LR+L+P     R L+FF +G G+    
Sbjct: 174 VYMARADFEAYNERARQQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGG 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                    L ++   GFPV+   +      G++ YY ++   R  LP+DIDG+VYK+D+
Sbjct: 234 ELPDTHSGTLAQLGAWGFPVSGLCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDD 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ +G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL PV + G ++
Sbjct: 294 RAGQQAMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L           D+RVGD V+V+RAG+VIP+VV +I++ R P   P+
Sbjct: 354 SNATLHNADQIARL-----------DVRVGDSVIVRRAGDVIPEVVSVILDRRPPGTTPW 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C S +VR+      +  AA RC+G L+C AQ+ E + HF SR A +I+GLG 
Sbjct: 403 QMPTRCPVCGSEIVRE------EGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGD 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK------------------------- 523
           + ++        A  ++  AD++ L R Q                               
Sbjct: 457 KYIETLVD----AGIVKSVADLYRLNRDQLLHLKLVLDAEDPSALAAALKLHLPAEGSGA 512

Query: 524 --------IENILGFGD------------------VSVTNLYDSINKRRNISLERFIFSL 557
                     N  G+                        NL  +I+  R  +LER +F+L
Sbjct: 513 VLNAVLKLDGNDPGWRTQALVQPASFEWNTKKIATKWADNLIAAIDASRAATLERLLFAL 572

Query: 558 GIRHVGA--------------------------------EIARSLAKYYLSYQNFAQEIN 585
           GI HVG                                 E+ARSL  ++   Q   Q I+
Sbjct: 573 GIEHVGESTAKALAQWFGDLELIRHLPWPLFKRVPDIGGEVARSLG-HFFEQQGNQQAID 631

Query: 586 NIIA-------------------HNNDDWLSLIRVPLVGDIIAQAIV------------- 613
           +++                     +    L    +P +  + A+ +V             
Sbjct: 632 DLLKVGQVRISDVHAPSAKLREGLDLAQLLVESEIPGITRLRAEKLVAALPGAQAVLDAE 691

Query: 614 ------------------EFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKL 652
                             E+     +   +   E  ++ +        + V+  ++ + +
Sbjct: 692 HGQFVNAGLPDDTARGLAEWLDAEGHGAMLLAAEKAMQLILAKAPALAEIVAGPLDGQTV 751

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL ++ R  A+E +  LGA VS  +S+KT  ++ G   GSKL+KAQ LGV + +E+
Sbjct: 752 VLTGTLAQLTRDAAKERLEALGAKVSGSVSKKTSFVVAGAEAGSKLDKAQSLGVPVWDED 811

Query: 713 QFLFLLQQYN 722
           + L  L ++ 
Sbjct: 812 RLLAYLAEHE 821


>gi|296532809|ref|ZP_06895486.1| NAD-dependent DNA ligase LigA [Roseomonas cervicalis ATCC 49957]
 gi|296266870|gb|EFH12818.1| NAD-dependent DNA ligase LigA [Roseomonas cervicalis ATCC 49957]
          Length = 719

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/710 (38%), Positives = 389/710 (54%), Gaps = 52/710 (7%)

Query: 32  DDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTH 91
           D  Y+Q   P+I D+EYDAL+RR  AI   FP L R++ P+               K  H
Sbjct: 33  DLAYHQQDAPVITDAEYDALRRRNAAIEARFPALKRADSPSDASPG--AAPAAGFAKARH 90

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
             P LSL+  +  ED  +F   I RF +  +   + F  EPKIDG  + + YE G FV  
Sbjct: 91  GTPMLSLDNAFAPEDFLEFTKSIRRFLRLDEAELLRFVAEPKIDGLSVNLTYENGVFVRG 150

Query: 152 ALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
           A RGDG  GED++  +       +PR L+   PE IE+RGEV+++K DF+A  DE   + 
Sbjct: 151 ATRGDGTEGEDITRNLETFSDKNLPRRLAAPFPEQIEIRGEVFMTKADFIAFRDEQARLA 210

Query: 210 R----------------KPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
                            +  ANPRNAA+G LR+L+P     R L  F +  G++S   A+
Sbjct: 211 EEREQRRERGEKVGPEIRIPANPRNAAAGSLRQLDPEITRQRPLRLFAYAQGESSAPVAE 270

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
                L ++   GF VN   R     H   ++  EM + R+ L YDIDG+VYK+D    Q
Sbjct: 271 THSGYLARLAEWGFDVNPLSRALPDEHAAEAFQAEMAAQRAGLAYDIDGVVYKLDRLDWQ 330

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG   R+PRW I+ KF  +QA TRLLDI IQ+GRTG LTP A ++PVN+GG ++ +AT
Sbjct: 331 ARLGFVGRAPRWAIAWKFPAEQAMTRLLDIQIQVGRTGALTPRAVMQPVNVGGVMVQHAT 390

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +D+R+GD V+++RAG+VIP++V I+  +R  +A PF+FP+
Sbjct: 391 LHNEDEIAR-----------KDVRIGDTVILQRAGDVIPQIVGIVPEKRPAEAVPFAFPT 439

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S  VR             RCTGGL C AQ +ERLKHFV R A +IEGLG++ + 
Sbjct: 440 TCPACGSHAVRPEGE------VVRRCTGGLICPAQTVERLKHFVGRTAMDIEGLGEENIL 493

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD-----VSVTNLYDSINKRRN 547
              +       ++ PADIF L R       ++    G+G        V NL  +I  RRN
Sbjct: 494 RLHEE----GLVKSPADIFRLHRH----AERMRGWEGWGKGAKTSKKVDNLLAAIEARRN 545

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             LERFIF+LGIR +GA+ A+ LA++Y S   +  ++       ++    L  +  VG  
Sbjct: 546 PPLERFIFALGIRRIGAQNAKLLARHYHSLAEWRAKMLAATIIGSEAREELGSIQGVGPA 605

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA  + EF+   RN  A++ L +EV+P      +   S    K +VFTGTL++  R +A+
Sbjct: 606 IATELAEFFAEQRNRDALDDLAREVTPQDAERLE-SDSPFAGKVVVFTGTLERSSRDEAE 664

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
               +LGA V+  +S+KTD ++VG + GSK +KA +LGV+ + E ++  L
Sbjct: 665 AVADRLGAKVTKSVSKKTDFVVVGADAGSKAKKAAELGVRTLTEPEWRAL 714


>gi|15807063|ref|NP_295792.1| DNA ligase [Deinococcus radiodurans R1]
 gi|81550876|sp|Q9RSQ5|DNLJ_DEIRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|6459863|gb|AAF11619.1|AE002043_4 DNA ligase [Deinococcus radiodurans R1]
          Length = 700

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/707 (30%), Positives = 351/707 (49%), Gaps = 46/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R    +L  E++ H+  YY+   P I D EYD L R    +  A P+ A   D + P+  
Sbjct: 15  RARYLALRDEVALHNRAYYEQDAPTIPDDEYDRLARELRELEAAHPEFA---DDHSPVQT 71

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIFFTLEPKIDG 136
           +GG  + +   VTH     SL+ +++ ++LR +  ++ R      D +   FT E KIDG
Sbjct: 72  VGGAPSSAFEPVTHPTQMTSLDNVFDDDELRDWQEKLARSLGLPLDTDDFTFTGELKIDG 131

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G+  +AA RG+G  GE V+A +  IP IP+ L   +   +EVRGEVY+S+ 
Sbjct: 132 LSVNLYYLDGELQWAATRGNGRVGEIVTAQVLTIPDIPQKL-EGLKGELEVRGEVYLSRA 190

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
           DF A N +   +G     NPRN A+G LR+ +P    TR+L   ++ +GK   + A+ Q+
Sbjct: 191 DFAAFNAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRHLKAILYAVGKRDGVPARTQW 250

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L+ +   GFP +              Y+  M    +   +D DG V K+D  S Q++ 
Sbjct: 251 EVLEWLSAQGFPTSRSSEHLRGIAAAADYHARMIRAHADFEFDADGTVLKLDSLSQQEEA 310

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I++KF  ++  T L  I + +GRTG L P+A L P  I G+ ++ ATLHN
Sbjct: 311 GFTSRAPRWAIAYKFPVEEVETVLESITVNVGRTGKLAPLAHLSPRLIEGSTVSKATLHN 370

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI+ +           D+RVGD VLV+++G VIP+++ ++ ++R  DA PF FP+ CP
Sbjct: 371 EDYIRDM-----------DLRVGDTVLVRKSGGVIPQIMRVLPDKRPADAAPFEFPTHCP 419

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    VR       +  A   C    AC AQ  ER+++FVSR A ++ G+G++ +    
Sbjct: 420 VCGHEAVR------AEGDANTYCPNP-ACPAQSFERIRYFVSRGAMDVRGIGEKLVTQLL 472

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   I   A ++TL   Q     +       G+    N+   +   +   L R I 
Sbjct: 473 HE----GLIHDAAGLYTLSAEQLAGLERG------GEKKAGNILGQLEASKTKPLWRLIN 522

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LG+ HVG   A++LA+ + + +         I            VP +G IIAQ++   
Sbjct: 523 ALGMSHVGQRNAQALARAFGTLEGLLAATPEQIEA----------VPGLGGIIAQSVTAS 572

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             +P     +  L      +    E   + ++     V TG L +  R   +  +   G 
Sbjct: 573 LADPAMRDLIARLQAS-GVAPQAEEVTRTDQLSGLNFVLTGALSRP-REVIKAELEAAGG 630

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            V+  +++KT  ++ G++ GSKL +A +LGV +++E     LL +  
Sbjct: 631 RVTGSVTKKTSYLVAGEDAGSKLARAGELGVPVLDEAGLAALLAERG 677


>gi|294626370|ref|ZP_06704972.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599371|gb|EFF43506.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 833

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/849 (29%), Positives = 406/849 (47%), Gaps = 172/849 (20%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + + +L + I   +  Y+   +P + D++YD L R  +A+  A P+LA     + P  ++
Sbjct: 9   QRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---SADSPTQRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G        +V H++P LSL   ++ E++ +F+ RI       +     F+ EPK+DG  
Sbjct: 66  GHLAASRFAEVRHALPMLSLGNAFSDEEVAEFVRRIGERL---EVKQPLFSAEPKLDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P+++EVRGEVY+ +  
Sbjct: 123 ISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRAA 182

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQY 255
           F A N +M A G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE    +   
Sbjct: 183 FEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTHS 242

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            +L ++R  GFPV+  V       G+++YY  +   R  L +DIDG+VYK+D+ + Q+++
Sbjct: 243 AILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQREM 302

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN
Sbjct: 303 GFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHN 362

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ CP
Sbjct: 363 ADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCP 411

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++   
Sbjct: 412 VCGSEIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLV 465

Query: 496 KSEDPAFSIRIPADI----------------------FTLQRRQQTSTTKIENILG---- 529
            S      ++  AD+                      F  + R+  ++     +      
Sbjct: 466 DS----GLVKGVADLYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYAQLEASVVG 521

Query: 530 ---------------------------------FGDVSVTNLYDSINKRRNISLERFIFS 556
                                                   NL ++I   R+ +LERF+F+
Sbjct: 522 IGVDLAGERDVPQTWQADLLRAGLPSFDWNRKKIATKWAENLIEAIETSRDTTLERFLFA 581

Query: 557 LGIRHVGAEIARSLAK-------------------------------YYLSYQNFAQEIN 585
           LGI HVG   A++L+                                ++       Q I+
Sbjct: 582 LGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAID 641

Query: 586 NII------------------AHNNDDWLSLIRVPLVGDIIAQAI---VEFYQ------- 617
           +++                  A +    L  + +P V  + AQ +   V+ +        
Sbjct: 642 DLLQRGVRIGDTHPPSPKLREALSFASVLDDMDIPKVTPVRAQQLAAAVDSFAALRTAGA 701

Query: 618 ------------------------NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
                                   N     A +  ++ V   +   +   +  ++ + +V
Sbjct: 702 DALQQAGVPAPVVATLLQWLDRPENAALASAAQQAMETVLARLPEADALQTGPLDGQTVV 761

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E +
Sbjct: 762 ITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEAR 821

Query: 714 FLFLLQQYN 722
            L  L  + 
Sbjct: 822 LLVFLGDHG 830


>gi|239928777|ref|ZP_04685730.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
 gi|291437098|ref|ZP_06576488.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
 gi|291339993|gb|EFE66949.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
          Length = 731

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/741 (29%), Positives = 351/741 (47%), Gaps = 62/741 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR++   L ++I  H   YY    P+I D+E+D L R  +A+            P+ 
Sbjct: 13  PAEAREQHVQLAEQIEEHRFRYYVNDAPVISDAEFDRLLRELEALEEE---YPELRTPDS 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  +N +DL  +  R+ R   +       F  E K
Sbjct: 70  PTQKVAGSYETEFTAVRHRSRMLSLDNTFNDDDLAAWTERVRRELGE---QEYHFLCELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YE+G+   AA RGDG +GED++  +R I  +P  L  + +P+++E+RGEVY
Sbjct: 127 VDGLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTIAEVPDRLKGDRVPDLVEIRGEVY 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 187 FPMEKFEELNRRLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHLVVHGIGALEGFEG 246

Query: 252 KGQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +  E    ++  G P +   R  +   G+  +       R ++ ++IDG+V K+DE  
Sbjct: 247 MTRLSEAYDLLKSWGLPTSRHNRVVDDLGGVREFIAHYGENRHSVEHEIDGVVVKLDEIR 306

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  
Sbjct: 307 LQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 366

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 367 ATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 415

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C + +         +     RC    AC AQ  ERL +   R A +IE  G   
Sbjct: 416 PGECPECGTPL-----RPMKEGDVDLRCPNARACPAQLRERLFYLAGRKALDIEHFGYVA 470

Query: 491 LDFFFKSEDPAF-SIRIPADIFTLQRRQQ--------------------TSTTK----IE 525
                K  +PA   ++   D+F L   Q                     T   K      
Sbjct: 471 AAALTKPLEPADPPLKDEGDLFDLTVDQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFA 530

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   + ++I   +   L R +  L IRHVG   A +LA+ + S     +   
Sbjct: 531 NQEGKAKKNALAMLENIAAAKERPLARLLTGLSIRHVGPVAAEALARAFRSIDRIEEASE 590

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNV 643
             + +             VG+I+A A+ +++    +   +                E   
Sbjct: 591 EELKNT----------EGVGEIVAAAVKQWFAEEWHREIIRKWKAAGVRMEDEGSGEDEG 640

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q
Sbjct: 641 PRPLEGLTVVVTGTLEHFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 700

Query: 704 LGVKIMNEEQFLFLLQQYNTT 724
           L V ++NEE    LL Q    
Sbjct: 701 LKVPVLNEEGLNVLLGQGPEA 721


>gi|294665962|ref|ZP_06731226.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604265|gb|EFF47652.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 833

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/850 (29%), Positives = 406/850 (47%), Gaps = 172/850 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + + +L + I   +  Y+   +P + D++YD L R  +A+  A P+LA     + P  +
Sbjct: 8   AQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---SADSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G        +V H++P LSL   ++ E++ +F+ RI       +     F+ EPK+DG 
Sbjct: 65  VGHLAASRFAEVRHALPMLSLGNAFSDEEVAEFVRRIGERL---EVKQPLFSAEPKLDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P+++EVRGEVY+ + 
Sbjct: 122 AISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRA 181

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQ 254
            F A N +M A G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE    +  
Sbjct: 182 AFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTH 241

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L ++R  GFPV+  V       G+++YY  +   R  L +DIDG+VYK+D+ + Q++
Sbjct: 242 SAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQRE 301

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLH
Sbjct: 302 MGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLH 361

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ C
Sbjct: 362 NADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQC 410

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++  
Sbjct: 411 PVCGSEIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVL 464

Query: 495 FKSEDPAFSIRIPADI----------------------FTLQRRQQTSTTKIENILG--- 529
             S      ++  AD+                      F  + R+  ++     +     
Sbjct: 465 VDS----GLVKGVADLYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYAQLEASVV 520

Query: 530 ----------------------------------FGDVSVTNLYDSINKRRNISLERFIF 555
                                                    NL ++I   R+ +LERF+F
Sbjct: 521 GIGVDLAGERDVPQTWQADLLRAGLPSFDWNRKKIATKWAENLIEAIETSRDTTLERFLF 580

Query: 556 SLGIRHVGAEIARSLAK-------------------------------YYLSYQNFAQEI 584
           +LGI HVG   A++L+                                ++       Q I
Sbjct: 581 ALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAI 640

Query: 585 NNII------------------AHNNDDWLSLIRVPLVGDIIAQAI---VEFYQ------ 617
           ++++                  A +    L  + +P V  + AQ +   V+ +       
Sbjct: 641 DDLLQRGVRIGDTHPPSPKLREALSFASVLDDMDIPKVTPVRAQQLAAAVDSFAALRTAG 700

Query: 618 -------------------------NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
                                    N     A +  ++ V   +   +   +  ++ + +
Sbjct: 701 ADALQQAGVPAPVVATLLQWLDRPENAALASAAQQAMETVLARLPEADALQTGPLDGQTV 760

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E 
Sbjct: 761 VITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEA 820

Query: 713 QFLFLLQQYN 722
           + L  L  + 
Sbjct: 821 RLLVFLGDHG 830


>gi|225075650|ref|ZP_03718849.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
           NRL30031/H210]
 gi|224953072|gb|EEG34281.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
           NRL30031/H210]
          Length = 822

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/834 (29%), Positives = 392/834 (47%), Gaps = 170/834 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIQYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H IP LSL   ++ +         ++  F  R+             +
Sbjct: 62  VGGEPLAGFNEVRHEIPMLSLTNAFSPQDENGVFDHTEMYAFDERVRGGLN---GEKPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
            +EPK DG  I++ Y  G    AA RGDG +GEDV+  ++ +  IP  L   NIPE+IE+
Sbjct: 119 VIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTHNVKTVSNIPLRLHGENIPELIEI 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV + K DF ALN +    G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAALNKKQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SEIF-AKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              F A+   + L   + LGF + +G          ++++Y +M+  R TLPY+IDG+V 
Sbjct: 239 QGGFIAEEHLQELNYCKELGFSLPDGNFGCFKNIDEVLAFYEQMQQKRPTLPYEIDGMVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQEKLGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A---------------------------QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457
                                       +P+  P+ CPIC+S + R+         A  R
Sbjct: 408 ETNISVSDGLQDDLFAETPSETRSEPLHKPYRLPTHCPICRSEIEREEGE------AVAR 461

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ--- 514
           C+GG+ C AQ+++ L HF SR A +I+GLG++Q++     +     +R  AD++ L    
Sbjct: 462 CSGGMLCQAQRVQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLDIPT 517

Query: 515 -------------RRQQTSTTKIENILGF-------------GDVSVTNLYDSINKRRNI 548
                          ++ S ++IE+  G                    N+   I   +  
Sbjct: 518 LQKMKETADKASINEEEPSNSEIEDFEGETGNTLLAKNNKKQPTKWAENILAGIEASKTP 577

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------- 583
            L RF+F+LGIRHVG   A++LA+ + + ++                             
Sbjct: 578 ELARFLFALGIRHVGERTAKTLAQAFGTLEHVRHAPEPILACLPDIGTVVARSIAHFFAQ 637

Query: 584 ------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE------ 614
                 I+ ++A         + +P                  + +  A A+ E      
Sbjct: 638 EAQQAMIDELLAVGIAPQSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSI 697

Query: 615 ---------------FYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVF 654
                          +   P+N   +E +    + ++ + +       ++  I  K  V 
Sbjct: 698 EGLQTDKALPADWQTWRSKPQNAALLENMKTFFAQTLSKLQDETISDGINEAIAGKTFVL 757

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKAQ LGV +
Sbjct: 758 TGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQALGVAV 811


>gi|77409440|ref|ZP_00786135.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1]
 gi|77171952|gb|EAO75126.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1]
          Length = 643

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/687 (32%), Positives = 359/687 (52%), Gaps = 53/687 (7%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
             YY    P + DS+YD L R    +    P+      PN P +++GG +     K  H 
Sbjct: 8   KEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHRVGGLVLEGFEKYQHE 64

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
            P  SL+  ++ E+L  F  R+       +  +  +  E KIDG  +++ Y  G     A
Sbjct: 65  YPLYSLQDAFSKEELIAFDKRVKA-----EFPTASYMAELKIDGLSVSLTYVNGILQVGA 119

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  F A+N E  A G + 
Sbjct: 120 TRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEAINIEKRANGEQE 177

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+LN   +  R L  F++   + S    + Q ++L+++   GF VN+ 
Sbjct: 178 FANPRNAAAGTLRQLNTGIVAKRKLATFLY--QEASPTQKETQDDVLKELESYGFSVNHH 235

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG   ++PRW I++KF 
Sbjct: 236 RLISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIAYKFP 295

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DYI            
Sbjct: 296 AEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 344

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR+GD V+V +AG++IP V+++++++R+        P  CP C S +V   +     
Sbjct: 345 EKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPSCGSELVHFEDE---- 399

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
              A RC   L C  Q  ERL HF SRDA NI G G   ++  F     A  I   ADI+
Sbjct: 400 --VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD----AHLIADVADIY 452

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L      S   +  + G  + S T +Y +I   +  S E+ +F LGIRHVG++ +R L 
Sbjct: 453 RL------SIEDLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGLGIRHVGSKASRLLL 506

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA-LLK 630
           + + + +  +Q     IA           +  +G +IA+++  F++       +E     
Sbjct: 507 EEFGNLRQLSQASQESIA----------SIDGLGGVIAKSLHTFFEKEEVDKLLEELTSY 556

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            V+ +      +  +++    +V TG L+K+ R++A+E +  LGA V+  +S+KTD+I+ 
Sbjct: 557 NVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVTGSVSKKTDLIVA 616

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           G + GSKL KAQ LG+ I +E+  L L
Sbjct: 617 GSDAGSKLTKAQDLGITIQDEDWLLNL 643


>gi|21242377|ref|NP_641959.1| NAD-dependent DNA ligase LigA [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|81803317|sp|Q8PM07|DNLJ_XANAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21107814|gb|AAM36495.1| DNA ligase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 833

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/850 (29%), Positives = 406/850 (47%), Gaps = 172/850 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + + +L + I   +  Y+   +P + D++YD L R  +A+  A P+LA     + P  +
Sbjct: 8   AQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---SADSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G        +V H++P LSL   ++ E++ +F+ RI       +     F+ EPK+DG 
Sbjct: 65  VGHLAASRFAEVRHAMPMLSLGNAFSDEEVTEFVRRISERL---EVRQPLFSAEPKLDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P ++EVRGEVY+ + 
Sbjct: 122 AISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPRVLEVRGEVYMPRA 181

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQ 254
            F A N +M A G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE    +  
Sbjct: 182 AFEAYNAQMRAQGGKILANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQAH 241

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L ++R  GFPV+  V       G+++YY  +   R  L +DIDG+VYK+D+ + Q++
Sbjct: 242 SAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQRE 301

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLH
Sbjct: 302 MGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLH 361

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ C
Sbjct: 362 NADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQC 410

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++  
Sbjct: 411 PVCGSEIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVL 464

Query: 495 FKSEDPAFSIRIPADI----------------------FTLQRRQQTSTTKIENILG--- 529
             S      ++  AD+                      F  + R+  ++     +     
Sbjct: 465 VDS----GLVKGVADLYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYAQLEASVV 520

Query: 530 ----------------------------------FGDVSVTNLYDSINKRRNISLERFIF 555
                                                    NL ++I   R+ +LERF+F
Sbjct: 521 GIGVDLAGERDVPQTWQADLLRAGLPSFDWNRKKIATKWAENLIEAIEISRDTTLERFLF 580

Query: 556 SLGIRHVGAEIARSLAK-------------------------------YYLSYQNFAQEI 584
           +LGI HVG   A++L+                                ++       + I
Sbjct: 581 ALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQKAI 640

Query: 585 NNIIAH------------------NNDDWLSLIRVPLVGDI------------------- 607
           ++++A                   +  + L  + +P V  I                   
Sbjct: 641 DHLLARKVRIGDTHPPSPKLRGELSLANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGG 700

Query: 608 ------------IAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKL 652
                       +A+++  +   P N       +  L E+   +    +  +  ++ + +
Sbjct: 701 PEPLVEAGVPQSVAESLAAWLLVPANDTLAVNAQRKLSELLAMLPEAGEEKTGPLDGQTV 760

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E 
Sbjct: 761 VITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEA 820

Query: 713 QFLFLLQQYN 722
           + L  L  + 
Sbjct: 821 RLLAFLGDHG 830


>gi|298528094|ref|ZP_07015498.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511746|gb|EFI35648.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 679

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/717 (35%), Positives = 379/717 (52%), Gaps = 51/717 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E        L +EI+ H+  YY    P+I D EYD +      +    P L  S     P
Sbjct: 6   EHIEHRAEELRREINLHNYYYYVLDDPLISDVEYDRMLAELKDLEEKHPGLKHS---GSP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+G           HS+P  SL+  +++E++R+F+ RI +   +  D   +F  EPK+
Sbjct: 63  TMKVGAPPAGQFEHREHSLPMYSLDNSFSLEEVREFVQRIKK---QIPDADPYFWAEPKL 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEVY 192
           DG  + I YE G FV A+ RGDG+ GEDV+  IR I  +P  L  +   PE +EVRGEV 
Sbjct: 120 DGLAVEIIYENGLFVAASTRGDGYVGEDVTDNIRTIRNLPLTLFYTEFFPEYLEVRGEVV 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT---SE 248
           I + +F  LN++    G K +ANPRNAA+G +R+L+     +R + FF +G G +   S 
Sbjct: 180 IPRQEFTRLNEDKARKGEKVFANPRNAAAGSVRQLDSRITASRPVYFFSYGTGISRFKSG 239

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q E+ + +  LG PV  G R       +   Y E    R    ++IDGLV KV++
Sbjct: 240 AGWQSQEEIARGLNALGLPVVPGGRICRDPAEVEECYREQLDRREQSDFEIDGLVIKVND 299

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++LG  +R+PRW ++ KF   Q  T+L DI +Q+GRTG+LTPVA LEP+N+GG ++
Sbjct: 300 IGLQQRLGFTSRAPRWAMAVKFPALQGRTKLKDIQVQVGRTGVLTPVAILEPLNLGGVVV 359

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHNE+ I+            +D++VGD VLV+RAG+VIP+VV     ER    + F
Sbjct: 360 SRASLHNENEIRA-----------KDLKVGDTVLVQRAGDVIPEVVRPETRERDGTQKEF 408

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP CQS V R  +       AA RC   ++C A+  ++L +F  +   +IEGLG+
Sbjct: 409 VFPEKCPACQSPVARIDDE------AAIRCLN-MSCPARLEQQLIYFAGKQGLDIEGLGR 461

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN-KRRN 547
           Q +    K       +  PADIF L         K+      G     N+ DSI    + 
Sbjct: 462 QWIKVLVKK----GLLCSPADIFRLSLDDLLPLDKM------GRKLAQNMLDSIRLAAQK 511

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L R I +LGIRHVG E A+ LA  Y      A    N +            +  +G  
Sbjct: 512 ATLPRLIAALGIRHVGVETAKRLAANYKDLDELAAAEKNSLQM----------IEDIGPE 561

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A +I  F+ NP+N   +E   +                ++ KKLVFTG +  + R +A+
Sbjct: 562 VASSIAGFFANPQNRKLLEEFKEIGLWPEHAAAAGEDLPLKGKKLVFTGGMHNLSRDRAR 621

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           E V +LG  VS  +S  TD++I GDNPGSKL KA++LG+ I++E++FL L++ ++ +
Sbjct: 622 EIVEKLGGKVSGSVSGNTDMVIAGDNPGSKLSKARELGLDILSEQEFLDLIENWSAS 678


>gi|300704237|ref|YP_003745840.1| DNA ligase [Ralstonia solanacearum CFBP2957]
 gi|299071901|emb|CBJ43230.1| DNA ligase [Ralstonia solanacearum CFBP2957]
          Length = 813

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/807 (29%), Positives = 376/807 (46%), Gaps = 141/807 (17%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           + +   YY   +P + D+EYD L R  +A+    P L     P+ P  ++GG +      
Sbjct: 25  NRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPAL---RTPDSPTLRVGGAVLPEFAP 81

Query: 89  VTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRYEK 145
           V H +P LS+    +   +    F   + R     + D  + +  E K DG  I +RYE+
Sbjct: 82  VRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDPPVEYAAELKFDGLAINLRYEQ 141

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISKNDFLALN 202
           G  V AA RGDG +GEDV+  IR I  IP  L      +P+++EVRGEVY+ ++DF  LN
Sbjct: 142 GFLVQAATRGDGTTGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLN 201

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI--FAKGQYEMLQ 259
                 G K + NPRN A+G +R+L+P     R L+FF +GLG+ +      +    ML 
Sbjct: 202 ARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSAMPETHSGMLD 261

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGFPV+          G+V ++  + + R +LP+DIDG+VYKV+  +LQ++LG R 
Sbjct: 262 ALVALGFPVSRERAAVKGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNSLALQRELGFRT 321

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R PRW ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNATLHNED +
Sbjct: 322 REPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEV 381

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD--------------- 424
           +            +D+RVGD V+V+RAG+VIP+VV +++  R  +               
Sbjct: 382 RR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNAAQQPK 430

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             PF  P  CP+C S VVR+         A  RC+GGL CSAQ+ E ++HF  R   +IE
Sbjct: 431 HPPFELPKSCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIRHFAGRRMMDIE 484

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL-----------GFGDV 533
           GLG++ +D   + E     +   AD++ L         +  +                  
Sbjct: 485 GLGERYIDNLVELE----YVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATK 540

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGA----------------------------- 564
              NL   I   +   L RF+F+LGIRHVG                              
Sbjct: 541 WAENLLAGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLTLPD 600

Query: 565 ---EIARSLAKYYLSYQNFAQEINNIIAHNNDDW-------------------------- 595
               +A ++A ++   +N  Q ++ ++A                                
Sbjct: 601 VGATVAEAIADFFDEPKN-QQALDALLAAGVAPQGEHPPSAKLRGQLEPAELYAVLGVPK 659

Query: 596 ---------------------LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
                                    ++  +   ++ +++++ +   +   +  L    + 
Sbjct: 660 LTAIRSKQLAALVPTLAQLATADAAQLEGLPAEVSASLLDWLEADGHRARLAQLDALRAE 719

Query: 635 --SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
             +    E      +  K +V TGTL  + R  A+  +   GA VS  +S+KTD ++ G+
Sbjct: 720 LLAAMPAETAEEGALSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSKKTDYVVAGE 779

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GSKL KA +LGVK+++E   L LLQ
Sbjct: 780 EAGSKLAKAAELGVKVLDEAGMLALLQ 806


>gi|227501728|ref|ZP_03931777.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725]
 gi|227077753|gb|EEI15716.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725]
          Length = 680

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/719 (29%), Positives = 356/719 (49%), Gaps = 61/719 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E + L QE+  H + YY   +P I D+++DAL +R   +    P+LA    P+ P  +
Sbjct: 2   QREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLMDLEKQHPELAV---PDSPTQQ 57

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   N     + H    +SL+ +++  +++ ++ R           +  +  E KIDG 
Sbjct: 58  VGATPNAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKIDGL 107

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVYI 193
            I + Y  G+   AA RGDG  GE+++   R I  IP  L+      +PE+IE+RGEVY+
Sbjct: 108 SIDLVYRNGRLDTAATRGDGTVGEEITPNARVISDIPHELTGTDEYPVPELIEIRGEVYM 167

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
              DF  +N+E  A G+  +ANPRNAA+G LR  +P ++  R L    HGLG        
Sbjct: 168 RPEDFEEINEERAADGKARFANPRNAAAGGLRMKDPAEVKKRRLRMVCHGLGAREGFSPS 227

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q++  + +   G PV+   RQ ++   +    +     R    +++DGLV KVD+   Q
Sbjct: 228 SQHDAYKAIAAWGLPVSPYTRQVHSAAEVQEEVSYWAEHRHDAIFEMDGLVVKVDDLGSQ 287

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A +EPV + G+ ++ AT
Sbjct: 288 RQLGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPFAIMEPVFVSGSTVSMAT 347

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+  +K            + + +GD +++++AGE+IP+V+  +  +R      +SFP+
Sbjct: 348 LHNQSEVKR-----------KGVLIGDTIIIRKAGEIIPEVLGPVREQRDGSEYEWSFPT 396

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +            A  RC    +C AQ   RL++  SR   +IE LG++   
Sbjct: 397 QCPACGTTL-----APQKDGDADWRCPNTQSCPAQLSARLEYLASRKGLDIEALGEKGAM 451

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTST----------TKIENILGFGDVSVT--NLYD 540
              ++      +   +++F L   +  ++           K     G   V+    NL  
Sbjct: 452 DLIEN----GILTDESELFELTEEKLLASDVYTAKRDTKDKRSKKEGNVKVNTAGKNLLQ 507

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++ + ++    R + SL IRHVG   AR+LA  Y S +         +A           
Sbjct: 508 NLEEVKDRDFWRVLVSLSIRHVGPIAARALAARYGSMEKLRAAKTEDLA----------E 557

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           V  VG +IA++   +++   +   VE   +         E      +E   +V TG+L+ 
Sbjct: 558 VDGVGAVIAESFHAWFEVDWHRTIVEKWAEAGLAMEVAAEDRKEQTLEGLTIVVTGSLED 617

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             R  A+E +   G   +  +S+KT  ++ G N GSK +KA+ LGV I+NEEQF  LL 
Sbjct: 618 FTRDSAKEAIISRGGKATGSVSKKTSYLVAGANAGSKEDKARDLGVPILNEEQFHTLLN 676


>gi|254292786|ref|YP_003058809.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814]
 gi|254041317|gb|ACT58112.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814]
          Length = 792

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/793 (32%), Positives = 408/793 (51%), Gaps = 100/793 (12%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
            +L+++QAR+    L + I   D  YY++  P + D++YDAL++   A+   FP L    
Sbjct: 14  ASLTLDQARERWEELAETIRQADSAYYEHDAPHLSDADYDALRQDLLALESEFPQLVAQ- 72

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P   +G + +    K+TH  P LSL+  ++ ED+ +F+ RI R+        +  T
Sbjct: 73  --DSPSQSVGVKPSGRFAKITHLQPMLSLDNAFSDEDVSEFLGRIRRYLGMDASVELHVT 130

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            EPKIDG   ++ YE G  +  A RGDG  GEDV+A ++ I  IP  L   + PE IE+R
Sbjct: 131 AEPKIDGLSASLLYENGVLISGATRGDGRVGEDVTANLKTIADIPHTLEGDDWPERIEIR 190

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GEVY+S  DF ALN+   A GRK +ANPRNAA+G LR+L+     +R L FF +  G TS
Sbjct: 191 GEVYMSHADFAALNEREAAAGRKTFANPRNAAAGSLRQLDVEVTKSRPLRFFAYAWGDTS 250

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           + F+  Q   ++     GF +N  ++ A++   ++  YN++ + R++L YDIDG+VYKVD
Sbjct: 251 KEFSVNQMGAVEAFSKWGFSINPLMKCADSASQLIEIYNQIANDRASLGYDIDGVVYKVD 310

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q +LG  +R PRW I+HKF  +QA+T L +I+IQ+GRTG LTPVA+LEPV +GG +
Sbjct: 311 RLDWQARLGFVSRFPRWAIAHKFPAEQATTILREIEIQVGRTGSLTPVAKLEPVTVGGVV 370

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHNED I             +DIRVGD+V+++RAG+VIP++V +I  ER   ++P
Sbjct: 371 VSNATLHNEDEIAR-----------KDIRVGDKVVIQRAGDVIPQIVRVIAEERPSHSKP 419

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL------------------ 469
           + FP+ CP C S  VR+++ K G+  A  RCTGGL C AQ                    
Sbjct: 420 YEFPTTCPACGSHAVREMDEK-GEEDARRRCTGGLICPAQAKERLKHFVSRKALDIDGLG 478

Query: 470 -ERLKHFVSRDAF----------------------NIEGLGKQQLDFFFKSEDPAFSIRI 506
            ++++ F  +                           EG GK   +  F + +    I  
Sbjct: 479 AKQIELFFDKGVVTAPQHIFQLEQRINELNLPPLEEWEGFGKTSSENIFAAINAKRQIPF 538

Query: 507 PADIFTL-------------------------------QRRQQTSTTKIENILGFGDVSV 535
              +  L                                 R   +  K+ +I   GD ++
Sbjct: 539 ARFLIGLGIQHVGQTNSGLLAQNFLSFDAFQTAMHAAIDARPGPAYLKLSSIDRIGDTTL 598

Query: 536 TNLYDSIN---------KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
            N+ + +               +L   I +L ++ V +    ++A+ Y ++  F  E+  
Sbjct: 599 ENILNFVEENGLPETPPASLEPNLSGQIPALQMKGVNSAACEAMARRYGNWDEFRNELLK 658

Query: 587 IIAHNNDD-WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
                    + S+  +  +GD+ A+A+++F+  P N   +  LL E+     +       
Sbjct: 659 ANDTKPASAFKSISNIDGMGDVSAEALIDFFMEPHNQDMLTQLLAEIEIEAAQA-IQTDG 717

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K +VFTG+L+ + R +A+     LGA V++ +S+KTD ++ G   GSKL+KAQ LG
Sbjct: 718 AVAGKTVVFTGSLELMSRDEAKSKAQSLGAKVASSVSKKTDYVVAGPGAGSKLKKAQDLG 777

Query: 706 VKIMNEEQFLFLL 718
           V ++ E+ +L ++
Sbjct: 778 VTVLTEQAWLDMI 790


>gi|329936847|ref|ZP_08286526.1| NAD-dependent DNA ligase LigA [Streptomyces griseoaurantiacus M045]
 gi|329303772|gb|EGG47656.1| NAD-dependent DNA ligase LigA [Streptomyces griseoaurantiacus M045]
          Length = 731

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/741 (29%), Positives = 346/741 (46%), Gaps = 62/741 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             QAR+    L ++I  H   YY    P++ D+E+D L R    +    P+L     P+ 
Sbjct: 13  PAQARERHVRLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRELQELEERHPEL---RTPDS 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  +N EDL  +  RI R        +  F  E K
Sbjct: 70  PTQKVAGAYETEFTSVRHRERMLSLDNTFNDEDLAAWTERIARELGS---QTYHFLCELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L    +P+++E+RGEV+
Sbjct: 127 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLHGEEVPDVVEIRGEVF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    +R L+  VHG+G       
Sbjct: 187 FPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTASRPLHMVVHGIGALEGFEG 246

Query: 252 KGQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +  +    +   G P +   R      G+  +       R ++ ++IDG V K+DE  
Sbjct: 247 MSRLSQAYDLLGSWGLPTSPYNRVVEDLAGVREFIAHYGENRHSVAHEIDGAVVKLDEIP 306

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +R+PRW I++K+A ++ +TRL++I + +GRTG +TP A++EPV + G+ +  
Sbjct: 307 LQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 366

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 367 ATLHNQDVVKA-----------KGVLIGDMVVLRKAGDVIPEILGPVADLRDGSEREFVM 415

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +         +     RC    AC AQ  ERL +   R + +IE  G   
Sbjct: 416 PADCPECGTPL-----RPMKEGDVDLRCPNSRACPAQLRERLFYLAGRKSLDIEHFGYVA 470

Query: 491 LDFFFKSEDPAF-SIRIPADIFTLQRRQQ--------------------TSTTK----IE 525
                +  +PA   +    D+F L   Q                     T   K      
Sbjct: 471 AAALTRPLEPAEPPLTDEGDLFDLTMEQLLPIKAYVLDQDSGLPKRDPRTGEEKIATVFA 530

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +  ++ ++I   +   L R +  L IRHVG   A +LA+ + S         
Sbjct: 531 NQQGEPRKNAVSMLENIAAAKERPLARVLTGLSIRHVGPVAAEALAREFRSVDRIEAASE 590

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643
             +A              VG IIA ++ +++    +   +                E   
Sbjct: 591 EELAATE----------GVGPIIAASLKQWFAEDWHREILRKWKAAGVRMEEESTGEDEG 640

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGD+PGSK +KA Q
Sbjct: 641 PRPLEGLTVVVTGTLEHHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQ 700

Query: 704 LGVKIMNEEQFLFLLQQYNTT 724
           L V ++NE+ F  LL+     
Sbjct: 701 LKVPVLNEDGFAVLLESGPEA 721


>gi|329120426|ref|ZP_08249092.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462110|gb|EGF08438.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 887

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/852 (29%), Positives = 393/852 (46%), Gaps = 172/852 (20%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +     ++  L   ++ +   YY    P + D+EYD L R  +A+  A P+L     P+ 
Sbjct: 64  MNDPAAKIRELTDLLNRYGYEYYTLDAPSVPDAEYDRLFRELEALEAAHPELKL---PDS 120

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDN 124
           P  ++GG       +V H +P LSL   ++ +         ++  F  R+          
Sbjct: 121 PTQRVGGAPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMTAFDERVRGGLG---GA 177

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPE 183
           +  + +EPK DG  +++ Y  G    AA RGDG SGEDV+  I+ +  IP  L   + P 
Sbjct: 178 NPQYVIEPKFDGLAVSLLYRDGVLQQAATRGDGASGEDVTQNIKTVSNIPLRLHGADTPA 237

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
           +IE+RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + 
Sbjct: 238 LIEIRGEVLMLKADFAALNRRQEEAGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYS 297

Query: 243 LGKTSEIFA-KGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           + +    FA +   + L+    LGF +  G          ++++Y +M+  R  LPY+ID
Sbjct: 298 IARQEGGFAAESHIQELEYCGTLGFSLPEGNYGCFGNIAEVLAFYEQMQQKRPALPYEID 357

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+P
Sbjct: 358 GMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTTVEAIDVQIGRTGAVTPVARLQP 417

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +++  
Sbjct: 418 VFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVVLER 466

Query: 421 RHPDA--------------------------QPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
           R   A                           P+  P  CPIC+S + R+         A
Sbjct: 467 RPMKAATVSNDTNAQNDLFEQRPSEKTQPAYPPYRLPENCPICRSPIEREEGE------A 520

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514
             RC+GG+ CSAQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ L 
Sbjct: 521 VARCSGGMLCSAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLD 576

Query: 515 ----RRQQTSTTKIENI------------LGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
               ++ + +  + EN+                     N+   I   +   L RF+F+LG
Sbjct: 577 VPVLQKMKETAEQSENVSDGLSNTSAAKPKKQPTKWAENIIAGIENSKTPELARFLFALG 636

Query: 559 IRHV--------------------------------GAEIARSLAKYYLSYQNFAQEINN 586
           IRHV                                G  +ARS+A ++ +       I+ 
Sbjct: 637 IRHVGERTAKTLAQAFGTLDTVRRAPEPVLACLPDIGEVVARSVA-HFFAQDAQQAMIDE 695

Query: 587 IIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE--------------- 614
           ++A           +P                  + +  AQA+ E               
Sbjct: 696 LLAAGVAPKTQPATLPVLRHAEPQRWLARLPDFKISETKAQALWELAGKKTDALLTDQAL 755

Query: 615 ------FYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIE--------------N 649
                 +   P+N   +   +  ++      S GR   +  S I                
Sbjct: 756 PADWQAWRSVPQNETLLRHTIAFLNELDQRSSRGREAAHSESSIADTANLSDGLNEAVAG 815

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K  V TGTL  ++R +AQ  +   G  VS  +S+KTD +I G+  GSKLEKA  LGV ++
Sbjct: 816 KTFVLTGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVIAGEAAGSKLEKALALGVAVL 875

Query: 710 NEEQFLFLLQQY 721
            EE+ L +L + 
Sbjct: 876 GEEELLAMLGRG 887


>gi|329942957|ref|ZP_08291736.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10]
 gi|332287548|ref|YP_004422449.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC]
 gi|313848123|emb|CBY17124.1| putative DNA ligase [Chlamydophila psittaci RD1]
 gi|325506604|gb|ADZ18242.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC]
 gi|328815217|gb|EGF85206.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10]
 gi|328914798|gb|AEB55631.1| DNA ligase, NAD-dependent [Chlamydophila psittaci 6BC]
          Length = 660

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/702 (34%), Positives = 389/702 (55%), Gaps = 50/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++  SL ++I   D  YY    P I D +YD   R+  +I    P+         P  +
Sbjct: 7   REQYLSLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLW---SPSMR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   + S   V H+ P LS+   + +E+L +F +R+ +           +TLE KIDG 
Sbjct: 64  LGDRASGSFPIVAHAHPMLSIANAYTLEELYEFFSRMEKALGYTP----KYTLEIKIDGI 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + +RYE+   + A  RG+G  GED++A IR I T+P  LS   PE +EVRGEV+ S+  
Sbjct: 120 AVALRYEQRVLLQALSRGNGRKGEDITANIRTIRTLPLRLSKEAPEFLEVRGEVFFSRAT 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N       +  +ANPRNAA G L+ L+  +   R L   ++  G  +E   +  YE
Sbjct: 180 FRQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQRNLEISIY--GSLAEENKRSHYE 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L   R  GFPV    RQ  T   +V+  +E++++R  LP +IDG+V KVD+   QK LG
Sbjct: 238 NLLLCREWGFPVLGQPRQCQTIDEVVASLHEIEALRDQLPMEIDGVVIKVDDIEDQKVLG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+  RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+ ++ A+L+NE
Sbjct: 298 MTAKHYRWALAYKYAPERAETILEDILVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNE 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V V++ GE+IP+VV + + +R   +QP+  P +CP+
Sbjct: 358 DEIER-----------KDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGSQPWVMPEYCPV 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  +V R+ +        + RCT  L CSA  +E+++ F  RDA +I+ LG++ +   F 
Sbjct: 407 CHGKVTRESDK------VSVRCTNPL-CSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFD 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I    DIF +            ++ GF D S+ N+  SI K +++ L+RF+ +
Sbjct: 460 LGC----IHRRCDIFQITEEDL------RHVPGFKDKSIRNVLKSIEKAKSVPLDRFLTA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A +LA+++LS +       ++++ + DD  S   V  +GD +A++IV ++
Sbjct: 510 LGIPYVGIGGANALAQHFLSLE-------SVMSASLDDLKS---VEGIGDKVAESIVAYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             P +   ++ +L      +    +  SS    K  V TG+L+K+ R +A+ Y+   G  
Sbjct: 560 NQPEHREEIQIMLSLGVHVLPYRRE--SSSCLGKTFVITGSLEKLTRSEAETYIRNCGGK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V + +S+ TD ++VG +PGSKL+KAQ+L + I++E++ L +L
Sbjct: 618 VGSSVSKNTDYLVVGKDPGSKLQKAQELEIPILSEDELLKIL 659


>gi|194366356|ref|YP_002028966.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia R551-3]
 gi|254781422|sp|B4SP88|DNLJ_STRM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194349160|gb|ACF52283.1| DNA ligase, NAD-dependent [Stenotrophomonas maltophilia R551-3]
          Length = 821

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/850 (30%), Positives = 410/850 (48%), Gaps = 168/850 (19%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S   A +    L ++I+  +  Y++   P I D +YD + R  +A+    P+LAR+   
Sbjct: 1   MSPSPA-ERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G   +    +V H++P LSL   ++ E++  F+ RI     ++   S+ F+ E
Sbjct: 57  DSPTQQVGARPSGRFAEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRR---SLQFSAE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I++RYE+G FV  A RGDG +GEDV+A +R I  IP+ L   + P+++EVRGE
Sbjct: 114 PKMDGLAISLRYEEGHFVLGATRGDGSTGEDVTANLREIGDIPKRLNGKDWPDVLEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           VY+++ DF A N+     G K  ANPRNAA+G LR+L+P     R L+FF +G G+    
Sbjct: 174 VYMARADFEAYNERARLQGGKVLANPRNAAAGSLRQLDPKISAQRKLSFFAYGTGEVQGG 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                    L ++   GFPV+   R  +   G++ YY ++   R  LP+DIDG+VYK+D+
Sbjct: 234 ELPDTHSGTLAQLGSWGFPVSALCRVVDGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDD 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ +G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL PV + G ++
Sbjct: 294 RAGQQAMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L           D+RVGD V+V+RAG+VIP+VV +I++ R     P+
Sbjct: 354 SNATLHNADQIARL-----------DVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPW 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C S +VR+      +  AA RC+G L+C AQ+ E + HF SR A +I+GLG 
Sbjct: 403 QMPTQCPVCGSEIVRE------EGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGD 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK------------------------- 523
           + ++        A  ++  AD++ L R Q                               
Sbjct: 457 KYIETLVD----AGIVKGVADLYRLSRDQLLHLKLVLDAEDPSALAAALKLHLPAEGSGA 512

Query: 524 --------IENILGFG------------------DVSVTNLYDSINKRRNISLERFIFSL 557
                     N  G+                        NL  +I+  R  +LER +F+L
Sbjct: 513 VLNAVLKLDGNDPGWRAQALVQPASFEWNTKKIATKWADNLIAAIDASRAATLERLLFAL 572

Query: 558 GIRHV--------------------------------GAEIARSLAKYYLSYQNFAQEIN 585
           GI HV                                G E+ARSL  ++   Q   Q I+
Sbjct: 573 GIEHVGESTAKALAQWFGDLELIRHLPWPLFKRVPDIGGEVARSLG-HFFEQQGNQQAID 631

Query: 586 NIIA-------------------HNNDDWLSLIRVPLVGDIIAQAIV------------- 613
           +++                     +    L    +P +  + A+ +V             
Sbjct: 632 DLLQVGQVRISDAHAPSAKLREGLDLAQLLVESEIPGITRLRAEKLVAALPSAQAVLDAE 691

Query: 614 ------------------EFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKL 652
                             E+     +   +   E  ++++        + V+  ++ + +
Sbjct: 692 HGQFVNAGLPDDTARGLAEWLDAEGHGAMLLAAEKAMRQILAKAPALAEIVAGPLDGQTV 751

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL ++ R  A+E +  LGA VS  +S+KT  ++ G   GSKL+KAQ LGV + +E+
Sbjct: 752 VLTGTLAQLTRDAAKERLEALGAKVSGSVSKKTSFVVAGTEAGSKLDKAQSLGVPVWDED 811

Query: 713 QFLFLLQQYN 722
           + L  L ++ 
Sbjct: 812 RLLAYLAEHE 821


>gi|113475951|ref|YP_722012.1| NAD-dependent DNA ligase LigA [Trichodesmium erythraeum IMS101]
 gi|123160812|sp|Q112N5|DNLJ_TRIEI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110166999|gb|ABG51539.1| DNA ligase, NAD-dependent [Trichodesmium erythraeum IMS101]
          Length = 774

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/812 (27%), Positives = 365/812 (44%), Gaps = 143/812 (17%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L++E   +   +L +++      YY   +PI+ D+ YD L R    +   +P L  S
Sbjct: 1   MAKLTLE-VEQYTQNLREKLQEAGYSYYVLDQPIMEDAVYDHLLRELQELESQYPQLIVS 59

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF----------- 117
              + P  ++G +       V H+IP  SLE  +NI++L+ +  R  R            
Sbjct: 60  ---DSPTQRVGEKPATKFVSVKHNIPLYSLENAFNIQELKSWQERWQRQTLLENQRLTLP 116

Query: 118 -------------------------------WQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
                                          + + D  S+ +  E KIDG+ + + YE G
Sbjct: 117 LRGEVKIKNSIDESDNFSTVNSLAPVITGSNFDEIDLASVDYICELKIDGSALALTYENG 176

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALNDEM 205
             V  A RGDG  GED++  ++ I +IP  L   N P ++EVRGE ++S N F  +N E 
Sbjct: 177 LLVRGATRGDGIMGEDITQNVKTINSIPLKLKVDNPPLLVEVRGEAFLSINVFENINAER 236

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE----IFAKGQYEMLQK 260
             +G   +ANPRNAA+G LR+L+   +  R L+FF + L         +    Q + L+ 
Sbjct: 237 EKIGEIIFANPRNAAAGTLRQLDSKIVAKRRLDFFAYTLYLEENESNFLQFYTQSQCLEL 296

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           ++ LGF VN   +  ++ + + +YY      R  LPY  DG+V K++  SLQ++LG   +
Sbjct: 297 LKKLGFKVNPNGQVCSSLNEVEAYYQYWDKQRENLPYLTDGVVVKLNSLSLQEKLGFTQK 356

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
            PRW I+ K+  ++  T +  + +Q+GRTG +TPVA L+PV + G  +  A+LHN D + 
Sbjct: 357 YPRWAIALKYPAEEIPTIVQGVTVQVGRTGAITPVAELKPVQLAGTTVQRASLHNSDRLA 416

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            L           D+ +GD V+V++AGE+IP+VV ++   R   AQ F  P+ CP C   
Sbjct: 417 EL-----------DLHIGDTVIVRKAGEIIPEVVRVLPELRPKKAQRFQMPTHCPECSQP 465

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +++  N       A  RC    +C A     L H+ SR A +I GLG++ +     S   
Sbjct: 466 LIKPRNE------AVTRCINT-SCPAILRGSLAHWASRAALDINGLGEKLVQQLVNS--- 515

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              ++  AD++ L     TS  ++      G  S   L +++   +     R ++ LGIR
Sbjct: 516 -GLVKSVADLYNLTMEDLTSLERM------GKKSANKLIEAMGTSKAQPWRRVLYGLGIR 568

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG   A  L + + +    +Q     I            V  +G  IAQ + ++++ P 
Sbjct: 569 HVGTVNAELLTQKFPTVAQLSQAKATDIE----------TVHGIGPEIAQYVEQWFRVPA 618

Query: 621 NIC------------------------------------------------AVEALLKEV 632
           N                                                   VE L    
Sbjct: 619 NQNLVERLKIAGVTMETKDSTSGMAKLTETVLAIQNLAARQNLVARQNLENLVERLKIAG 678

Query: 633 SPSIGRHE-----KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
                +       +  S  +  K  V TGTL  ++R +A+  +   G  V++ +S KTD 
Sbjct: 679 VTMETKDSTSDVVEVQSGLLRGKTFVLTGTLPTMRRDEAKNLIQNAGGKVTSSVSSKTDF 738

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           I+VG++ GSKLEKA++LGVK ++E + L  L 
Sbjct: 739 IVVGEDGGSKLEKAKKLGVKELSESELLEALA 770


>gi|84498237|ref|ZP_00997034.1| DNA ligase [Janibacter sp. HTCC2649]
 gi|84381737|gb|EAP97620.1| DNA ligase [Janibacter sp. HTCC2649]
          Length = 731

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/738 (28%), Positives = 352/738 (47%), Gaps = 58/738 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            ++ R E + L ++ + H   Y+    P + D EYD L +R + +   +P L     P  
Sbjct: 30  PDEIRHEWTDLAEQATTHQFAYHVKDSPTVSDGEYDKLMKRLNMLEDEYPSL---RTPES 86

Query: 74  PLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P   +GG + +     V H    LSL+  ++ E++ ++  R+ R       ++  +  E 
Sbjct: 87  PTQSVGGAVFSTDFESVDHLERMLSLDNAFSPEEMVEWNARVTR----DAGSAFHYLCEL 142

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVR 188
           KIDG  I + YEKG+   A  RGDG +GEDV+  +R +  IP  L       +P+++EVR
Sbjct: 143 KIDGLAINLLYEKGRLTRALTRGDGRTGEDVTLNVRTVRGIPTELKGTKKHPVPDLVEVR 202

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY     F  LN +++  G+ PYANPRN A+G LR+ +P    +R L   VHG+GK  
Sbjct: 203 GEVYFPIEAFGELNAQLVEAGKPPYANPRNTAAGSLRQRDPRVTASRELRMLVHGIGKRE 262

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q E    ++  G PV+   R  +T   +  +       R  + ++IDG+V KVD
Sbjct: 263 GFALTRQSEAYAALQEWGMPVSTHFRVVDTIEEVNEFIVSTGEHRHDVEHEIDGVVVKVD 322

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E  +Q+QLG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   ++PV + G+ 
Sbjct: 323 EIVVQRQLGATSRAPRWAIAYKYPPEEVNTVLLDIQVNVGRTGRVTPFGVMKPVVVAGST 382

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN   +             + + +GD +++++AG+VIP+++  +V+ R    + 
Sbjct: 383 VERATLHNATEVTR-----------KGVLIGDTIVLRKAGDVIPEILGPVVDLRDGSERA 431

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C + +         +     RC    +C +Q  ERL     R AF+IE LG
Sbjct: 432 FVMPVDCPSCGTPL-----APAKEGDKDIRCPNSRSCPSQLRERLSGLAGRGAFDIEALG 486

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQ------------RRQQTSTTKIENILGFGDVSV 535
            +      +S      +   + +F L               ++T +              
Sbjct: 487 WEGSVALLES----GVLTDESTLFGLTDADIARVPLYTRAAKKTDSEDAVIDGRVPSAIG 542

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
             L  ++   +   L R +  L IRHVG   AR+LA+++ S           ++      
Sbjct: 543 AKLVANLESAKTQPLWRVLVGLSIRHVGPTAARALAQHFGSMDGIRAATVEELSG----- 597

Query: 596 LSLIRVPLVGDIIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
                V  VG IIA+++ +++    N  ++  V+    +        + ++   +E   +
Sbjct: 598 -----VEGVGGIIAESVRDWFDREGNEWHVAIVDQWAADGVRMEDERDTSIEQTLEGLTV 652

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+++   R +A+E +   G   S  +S+KTD ++VG   GSK  KA++LG+ I++E 
Sbjct: 653 VVTGSMEGFTRDEAKEAILSRGGKASGSVSKKTDYVVVGPGAGSKEAKARELGLTILDEA 712

Query: 713 QFLFLLQQYNTTLRIHDD 730
            F+ LL+          D
Sbjct: 713 GFVTLLESGAAEGSSAQD 730


>gi|313896259|ref|ZP_07829812.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975058|gb|EFR40520.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 672

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/711 (31%), Positives = 356/711 (50%), Gaps = 44/711 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            I+  + EL+ L ++I  +   YY  +   I D E+D L  R  AI   +P+L      N
Sbjct: 3   DIQMVKAELAELRRQIRRYSKQYYDDNASDISDYEFDQLMLRLKAIEAEYPELITK---N 59

Query: 73  GPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P  K+GG     +   V H +P LSL+ +++  ++R F+  I   +      +  F +E
Sbjct: 60  SPTQKVGGSAQRTAGVLVKHDVPMLSLQDVFSEAEIRDFVAGIRAHFP-----AAEFVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
            KIDG  + +RYE G    A  RGDG   GEDV+   R I  +   LS + P   EVRGE
Sbjct: 115 EKIDGLSLALRYENGVLARAVTRGDGIVQGEDVTENARMIADVREQLS-DAPVYFEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI 249
           VY+ +  F A+N+    +G KP+ANPRN A+G LR+L+      R L+ FV  L +T   
Sbjct: 174 VYMERAAFAAVNERQELLGLKPFANPRNCAAGTLRQLDARVTRERRLSMFVFNLQRTEGR 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                      MR  G  +  G R   T   + +   E+ + R +LPYDIDG V KV++F
Sbjct: 234 TFASHTASYDFMRAQGIKIIAGYRVCRTADEVWAAIEEIGARRGSLPYDIDGAVVKVNDF 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S + +LG  A++PRW I++K+  ++  T L +I++ +GRTG +TP A  +PV + G  + 
Sbjct: 294 SQRAELGATAKAPRWAIAYKYPPEEKETVLREIELSVGRTGRITPTAVFDPVQLCGTRVE 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+DYI GL           D+R+GD +LV ++GE+IP+V  +++ +R     P+ 
Sbjct: 354 RATLHNQDYIAGL-----------DVRIGDTILVYKSGEIIPRVKAVVLEKRPASTVPYV 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
               CP+C    VR+ +       A  +C   + C AQ    + HFVSR A +I+G G  
Sbjct: 403 IGDTCPVCGEPAVREAD------TADMKCQNPV-CPAQVENHILHFVSRTAMDIKGFGTS 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +         A  +   ADI+TL + +      I + +   + +V  L D++   +  +
Sbjct: 456 AVIAL----THAGYLHDIADIYTLHQHRD---ELISSGIIGREKTVDKLLDAVAHSKENT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +  LGI  +G   A SL + + S    A+           D   ++ VP +G++ A
Sbjct: 509 PDRLLTGLGIAGIGRAAAISLMQEFPSVDALAEA-------ARGDAEKILAVPDMGEVSA 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +++ EF+ +      +E         +    +   + +E K  V TGTL  + R +    
Sbjct: 562 RSLAEFFDSEAGRGLLEKFRAAGVNFVSAPRERTGTALEGKSFVITGTLPTLSREECAAL 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +T  G  V   +S+KTD ++ G+  GSKL KA+ LGV +++E     ++++
Sbjct: 622 ITAHGGTVKGSVSKKTDYLVAGEAAGSKLAKAEFLGVPVLDEAALRRMIEE 672


>gi|146307768|ref|YP_001188233.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina ymp]
 gi|190359273|sp|A4XVY5|DNLJ_PSEMY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145575969|gb|ABP85501.1| DNA ligase, NAD-dependent [Pseudomonas mendocina ymp]
          Length = 786

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/680 (33%), Positives = 351/680 (51%), Gaps = 55/680 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A + +S L  E+  H+  YY   +P + D+EYD L R   A+    P+L     P  
Sbjct: 1   MTDAAQRISELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELV---TPES 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++GGE   +  +V H +P LSL   +  +DLR F   +         +       + 
Sbjct: 58  PTQRVGGEALSAFGEVRHEVPMLSLGNAFEEDDLRAFDRSVQSGLGLAGGDLFGGGAEVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++RYE G+ V  A RGDG +GED+SA +R I  +P  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLRYENGQLVRGATRGDGSTGEDISANVRTIRNVPLKLQGEGWPQVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++ K  F  LN      G K +ANPRNAA+G LR+L+P    +R L F  +G+G+
Sbjct: 178 VRGEVFMPKAGFEELNARQAEAGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S      Q  MLQ+++  G P++  ++ A      + YY ++   R +L YDIDG+V+K
Sbjct: 238 VSGELPGTQVAMLQQLKAWGIPISRELKLAKGVEACLDYYRDIGQRRMSLAYDIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+    Q+QLG RAR+P W I+HKF  ++  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNIEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+V+ ++   R  DA
Sbjct: 358 VMVANATLHNMDEVARL-----------GVMIGDTVIIRRAGDVIPQVMAVVPERRPADA 406

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVA------AHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V R    K  K  A       +RC G L+C AQ  + + HFVSR 
Sbjct: 407 RPVHIPEQCPVCGSAVERTQLIKRSKGKASVSEGSVYRCVGRLSCQAQLKQAIIHFVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L   Q           GF +VS   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLTYEQIIGLE------GFAEVSSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  SL RFI++LGI  VG E A+ LA+   S +   Q +  ++ +         
Sbjct: 517 AAIENSKRPSLARFIYALGIPDVGEETAKVLARSLASLERVRQALPEVLTY--------- 567

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +P +G  +A  I  F+++  N   + ALL E    +    +  +           G L 
Sbjct: 568 -LPDIGLEVAHEIHSFFEDAHNQQVISALLGECGLELQDEGELSAEFSAVAT--LGGMLD 624

Query: 660 KIQ-----RHKAQEYVTQLG 674
           K+         AQ+   + G
Sbjct: 625 KLNIPTVGPGAAQKLAERFG 644



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 16/179 (8%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L   +  L I  VG   A+ LA+ + S +             N DWL + +   + +  
Sbjct: 618 TLGGMLDKLNIPTVGPGAAQKLAERFGSLEGVL----------NGDWLDMRQA--LPERQ 665

Query: 609 AQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
           A+A+ EF+    N     A+E  L+E        +K      +  +  V TGTL+ + R 
Sbjct: 666 AKAVREFFDETANAQRARAIEQQLREFGMHWESEKKVAEGLPLAGQTWVLTGTLEVMSRD 725

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            A+E +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E QFL  L+ Y  
Sbjct: 726 VAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGVKVLDEAQFLEQLKSYGI 784


>gi|83748812|ref|ZP_00945825.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551]
 gi|207743250|ref|YP_002259642.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein
           [Ralstonia solanacearum IPO1609]
 gi|83724504|gb|EAP71669.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551]
 gi|206594647|emb|CAQ61574.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein
           [Ralstonia solanacearum IPO1609]
          Length = 813

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/807 (29%), Positives = 377/807 (46%), Gaps = 141/807 (17%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           + +   YY   +P + D+EYD L R  +A+    P+L     P+ P  ++GG +      
Sbjct: 25  NRYAHEYYVLDQPSVPDAEYDRLYRALEALEAEHPEL---RTPDSPTLRVGGAVLPEFAP 81

Query: 89  VTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRYEK 145
           V H +P LS+    +   +    F   + R     + D  I +  E K DG  I +RYE+
Sbjct: 82  VRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDPPIEYAAELKFDGLAINLRYEQ 141

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISKNDFLALN 202
           G  V AA RGDG +GEDV+  IR I  IP  L      +P+++EVRGEVY+ ++DF  LN
Sbjct: 142 GFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLN 201

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI--FAKGQYEMLQ 259
                 G K + NPRN A+G +R+L+P     R L+FF +GLG+ +      +    ML 
Sbjct: 202 ARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPETHSGMLD 261

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGFPV+          G+V ++  + + R +LP+DIDG+VYKV+  +LQ++LG R 
Sbjct: 262 ALVALGFPVSKERAAVMGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNALALQRELGFRT 321

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R PRW ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNATLHNED +
Sbjct: 322 REPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEV 381

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD--------------- 424
           +            +D+RVGD V+V+RAG+VIP+VV +++  R  +               
Sbjct: 382 RR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPK 430

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             PF  P  CP+C S VVR+         A  RC+GGL CSAQ+ E ++HF  R   +IE
Sbjct: 431 YPPFELPKSCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIRHFAGRRMMDIE 484

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL-----------GFGDV 533
           GLG++ +D   + E     +   AD++ L         +  +                  
Sbjct: 485 GLGERYIDNLVELE----YVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATK 540

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEI--------------------------- 566
              NL   I   +   L RF+F+LGIRHVG                              
Sbjct: 541 WAENLLAGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLTLPD 600

Query: 567 -----ARSLAKYYLSYQNFAQEINNIIAHNNDDW-------------------------- 595
                A ++A ++   +N  Q ++ ++A                                
Sbjct: 601 VGATVAEAIADFFDEPKN-QQALDALLAAGVAPQGEHPPSAKLRSQLEPAELYAVLGVPK 659

Query: 596 ---------------------LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
                                    ++  +   ++ +++++ +   +   +  L    + 
Sbjct: 660 LTATRSKQLATLVPTLAQLTTADAAQLEGLPAEVSASLLDWLEADGHRARLAQLDALRAE 719

Query: 635 --SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
             +    E      +  K +V TGTL  + R  A+  +   GA VS  +S+KTD ++ G+
Sbjct: 720 LLAAMPAETAEEGALSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSKKTDYVVAGE 779

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GSKL KA++LGVK+++E   L LLQ
Sbjct: 780 EAGSKLAKAEELGVKVLDEAGMLALLQ 806


>gi|218885555|ref|YP_002434876.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|254781315|sp|B8DJT6|DNLJ_DESVM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218756509|gb|ACL07408.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 808

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/734 (32%), Positives = 372/734 (50%), Gaps = 74/734 (10%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
            +L  +++YH   YY      I D+EYDAL R    I   +P L     P+ P +++G  
Sbjct: 38  EALRDQLNYHSHRYYVLDDAEISDAEYDALFRELQDIEAEWPSL---RTPDSPTHRVGDT 94

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
           +  +L    H++   SL+  ++ E+   +   I R  + + D    F  +PK+DG  + +
Sbjct: 95  VVAALETQAHTLRMYSLDNAFSAEE---WDGFIQRMLRAEPDAPTAFWCDPKMDGLALEV 151

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVYISKNDFL 199
            YE G F  A  RGDG  GE V+  +R +  +P  L      P  +EVRGEV I++ +F 
Sbjct: 152 IYENGVFTTALTRGDGEKGEIVTTAMRTVRNLPLRLHGEGPHPARLEVRGEVVITRAEFD 211

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK------------- 245
           ALN      G K +ANPRNAA+G +R+L+ +    R L F  +G+G+             
Sbjct: 212 ALNAARRGAGEKLFANPRNAAAGSVRQLDASVTAGRPLRFLAYGVGQVVWPAETSDGAAS 271

Query: 246 ---TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                E       +++  +   GF      R+  T   +++YY ++   RS LP+DIDG+
Sbjct: 272 AAQGPEARWATHGQVMAALADYGFGTPPDARRCETPAQVMAYYEDLGRRRSELPFDIDGV 331

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K+D+ S Q  LG  AR+PRW I+ KF   QA+TRL  I IQ+GRTG+LTPVA L PV 
Sbjct: 332 VAKLDDLSAQAALGYTARAPRWAIALKFPAHQATTRLEHIAIQVGRTGVLTPVAELAPVA 391

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG  ++ ATLHNED I+            +D+RVGD V+V+RAG+VIP+VV  +V++R 
Sbjct: 392 VGGVTVSRATLHNEDEIRA-----------KDLRVGDMVVVQRAGDVIPEVVRPLVDQRP 440

Query: 423 PDA-QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                 F FP+ CP+C + V R+         AA RC   + C A   + + HFVS+   
Sbjct: 441 ASGLPEFEFPAECPVCHTPVRREPGE------AAWRCVN-VGCPAVVRQSIIHFVSKAGL 493

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+G+G++ ++           +  PAD+F L ++   +  ++      G     N   +
Sbjct: 494 DIQGVGRRWVELLVDRGK----VTSPADLFGLDKQTLLAFERM------GPKLAENFIAA 543

Query: 542 INKRRN-ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            +  R   +L R I +LGIRHVG + AR+LA ++             +           +
Sbjct: 544 FDTARTGATLNRLICALGIRHVGEQTARTLAAHFADLDALGAAQAETLQ----------Q 593

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEK-----NVSSEIENKK 651
           +P +G  +A +I  F+ N  N   +E L       V P     +        S  +   +
Sbjct: 594 LPDIGPEVAASIRAFFANEGNRALLERLRGVGLWPVRPVRPEADAAGAPGEGSGPLAGLR 653

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           ++FTG+L  + R  A+      GA +   +S+K D+++VGD PGSKL+KA +LG++++ E
Sbjct: 654 VLFTGSLTTLTRSDAERRAVAAGANILGSVSKKLDLLVVGDKPGSKLDKATKLGIRVLRE 713

Query: 712 EQFLFLLQQYNTTL 725
           ++FL LL+     +
Sbjct: 714 QEFLDLLEGRGGDV 727


>gi|254371060|ref|ZP_04987062.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|151569300|gb|EDN34954.1| hypothetical protein FTBG_00816 [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 643

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/690 (36%), Positives = 387/690 (56%), Gaps = 54/690 (7%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+   KPII DS+YD L R    + +  P        N  L+++GGE+      + H   
Sbjct: 2   YHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI---NSVLDRVGGEVLAGFETIKHKKK 58

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL  ++++E+LR F  +I           I    EPK+DG  I+I Y+ GKF YA  R
Sbjct: 59  MTSLANVFSLEELRDFYDKIE--------YDIELECEPKMDGLAISIFYKNGKFDYAVTR 110

Query: 155 GDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG  GE VS  ++ I  +P  L + N PE +EVRGE+ + K  FL+LN+ M     K +
Sbjct: 111 GDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTF 170

Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF--AKGQYEMLQKMRCLGFPVNN 270
           ANPRNAA+G +R L+   +  R L  + +G+G  S+ F   + Q+E++Q ++  GF +++
Sbjct: 171 ANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISD 230

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
            +  A  F  +  Y+++M   R+ L YDIDGLV+KV+   LQ  +G  AR P+W I++KF
Sbjct: 231 NMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKF 290

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
             ++  + +L+++ Q+GRTG +TPVARL+PV +GG +++NATLHN + IK          
Sbjct: 291 PAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVIVSNATLHNINEIKR--------- 341

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
             +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ    P+ CP+C S++    +    
Sbjct: 342 --KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQMVEMPTNCPVCDSKIENVNDQ--- 396

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
              A +RCTGG  C AQ  ERLKHFVSR A +I+ LG + ++    +      I+ PADI
Sbjct: 397 ---AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLVAAN----LIKYPADI 449

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           + L   Q T   ++         S  N+ DSI K +  SL RFIF++GI+ +G   + +L
Sbjct: 450 YKLNFEQLTGLERMAA------KSSQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDAL 503

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A ++ S ++F              +  LI +  +G+I+A  IV F+ +  NI  VE  L 
Sbjct: 504 ANHFGSLESFRDA----------KFEELIEINDIGEIMANNIVSFWHDSLNIKIVEEFLA 553

Query: 631 EVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
                 +  + E   +     K +V TG+ +   R +  + +  +GA V++ +S+KTD++
Sbjct: 554 IGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMV 613

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 614 ICGDNAGSKLTKAQELGVEVILEDNLKDLL 643


>gi|29840375|ref|NP_829481.1| NAD-dependent DNA ligase LigA [Chlamydophila caviae GPIC]
 gi|75539575|sp|Q822R2|DNLJ_CHLCV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29834724|gb|AAP05359.1| DNA ligase [Chlamydophila caviae GPIC]
          Length = 662

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/702 (33%), Positives = 375/702 (53%), Gaps = 50/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++  SL +E+   D CYY     +I D +YD   ++  AI    P+         P  +
Sbjct: 7   REQYLSLCKELEKDDYCYYVLHNAVISDYDYDMKMQKLLAIEAQHPEWKVLW---SPSMR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  ++ +   V HS P LS+   + +E+L  F +R+ +           +TLE KIDG 
Sbjct: 64  LGDRVSGNFPVVAHSHPMLSIANAYTLEELNDFFSRVEKTLGYAP----IYTLELKIDGI 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYE+G  V A  RG+G  GED++A IR I ++P  L  + PE +EVRGEV+  +  
Sbjct: 120 AVAIRYEQGILVQALSRGNGQKGEDITANIRTIRSLPLRLPKDAPEFLEVRGEVFFKRET 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N       +  +ANPRNAA G L+ L+  +   R L   V+  G  S+   +  Y+
Sbjct: 180 FEQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQRNLELSVY--GSLSDENTESHYD 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L   +  GFP+    RQ  T   +V   +E++ +R  LP +IDG+V KVD+   QK LG
Sbjct: 238 NLMLCKRWGFPIFGQPRQCQTIAEVVKSLDEIEGLRDQLPMEIDGVVIKVDDVEAQKALG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+  RW +++K+A ++A T L +I IQ+GRTG+LTPVA+L PV + G+ ++ A+L+NE
Sbjct: 298 MTAKHYRWALAYKYAPERAETILENILIQVGRTGVLTPVAKLSPVFLSGSRVSRASLYNE 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           + I+            +DIR+GD V V++ GE+IPKVV + + +R    QP+  P FCP+
Sbjct: 358 EEIER-----------KDIRIGDTVYVEKGGEIIPKVVGVCLEKRPEGTQPWVMPEFCPV 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  +V R+ +        + RCT  L CSA  +E+++ FV R A +I+ LG++ +   F 
Sbjct: 407 CHGKVTRESDK------VSVRCTNPL-CSAGAIEKIRFFVGRGALDIDHLGEKVITKLFD 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I    DIF +             + GF D SV N+  SI K +   L+RFI +
Sbjct: 460 ----LGVIHRCCDIFKITEEDLL------QVPGFKDKSVKNVLKSIEKAKQAPLDRFIAA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG  +A +LA+++L+ +          A        L  +  +GD +A++I  ++
Sbjct: 510 LGIPYVGVRVASALAQHFLNLE----------AVMGASLEELKSIEGIGDKVAESIEAYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                I  ++ +L      +  H +  SS    K  V TGTL+K+ R +A+  +   G  
Sbjct: 560 NQQDTIEEIQKMLSLGVNVLPYHRE--SSSCLGKTFVITGTLKKMTRSEAEASIRNCGGK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V + +S+ TD ++VG++PGSK +KAQ+L + I+NE   L +L
Sbjct: 618 VGSSVSKSTDYLVVGEDPGSKFKKAQELEIPILNENDLLKIL 659


>gi|292670878|ref|ZP_06604304.1| DNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647499|gb|EFF65471.1| DNA ligase [Selenomonas noxia ATCC 43541]
          Length = 673

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/709 (30%), Positives = 353/709 (49%), Gaps = 44/709 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            I++ + EL+ L ++I  +   YY  +   I D ++D L +R  AI   +P+L      N
Sbjct: 3   DIKEIKNELTELRKKIRKYSKQYYDENASDISDYDFDLLMQRLKAIEAEYPELITK---N 59

Query: 73  GPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P  K+GG     +   V H +P LSL+ +++ +++R F+T +          S  F +E
Sbjct: 60  SPTQKVGGTAQREVGVLVPHDVPMLSLQDVFSEDEIRTFVTGV-----LSHFPSAEFVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
            KIDG  + +RYE G  V A  RGDG   GEDV+   RAI  +   L  ++P   EVRGE
Sbjct: 115 EKIDGLSLALRYENGALVRAITRGDGVVQGEDVTLNARAISDVVETLHDSVP-YFEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           VY+ +  F  +N+    +G KP+ANPRN A+G LR+L+      R L+ FV  L +    
Sbjct: 174 VYMERAAFAEVNERQELLGLKPFANPRNCAAGTLRQLDARVTKERKLSMFVFNLQRAEGH 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 +    MR  G  +       +T   + +    + + R  LPYDIDG V KV++F
Sbjct: 234 SFTSHTDAYDFMRAQGIKIIANYNVCHTADEVWNAIMAIGARRGDLPYDIDGAVVKVNDF 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + + +LG  A++PRW I++K+  ++  T L +I++ +GRTG +TP A  +PV + G  + 
Sbjct: 294 AQRAELGTTAKAPRWAIAYKYPPEEKETILRNIELSVGRTGRITPTAVFDPVQLCGTRVE 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+DYI  L           D+R+GD +LV ++GE+IP+V  +I  +R  +  PF 
Sbjct: 354 RATLHNQDYIDSL-----------DVRIGDTILVYKSGEIIPRVKAVIKEKRPKNTPPFV 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
               CP+C S  VR+ +       A  +C    AC AQ    + +FVSR+A +I+G G+ 
Sbjct: 403 IGDQCPVCGSHAVRETD------TADMKCQNP-ACPAQVENHILNFVSRNAMDIKGFGES 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +         A  +   ADI++L          I + L   + SV N   +IN+ +  +
Sbjct: 456 AIIAL----THAGYLHDIADIYSL---HLHRNELISSGLIGREKSVDNRLAAINESKANT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +  LGI  +G   A SL + + S     +           D   +  VP +G+I  
Sbjct: 509 PDRLLTGLGISGIGRAAAVSLMQAFPSIDALQETACT-------DPEKIRAVPDMGEISV 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q + EF+ +      ++              K   + ++ K  V TGTL  + R +    
Sbjct: 562 QKLTEFFTSETGRALLDKFRAAGVNFASTPMKPAGAALDGKSFVITGTLPTLSREECASL 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +T  G  V + +S+KTD ++ G+  GSKL+KA+ LG+ I++E     ++
Sbjct: 622 ITSHGGTVKSSVSKKTDYLVAGEAAGSKLQKAEDLGIPILDEASLRDMI 670


>gi|241759788|ref|ZP_04757888.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
 gi|241319796|gb|EER56192.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
          Length = 859

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/834 (29%), Positives = 384/834 (46%), Gaps = 170/834 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 42  AQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQR 98

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R++            +
Sbjct: 99  VGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVHGGLN---GEKPEY 155

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
            +EPK DG  I++ Y  G    AA RGDG +GEDV+  ++ +  IP  L   NIPE+IE+
Sbjct: 156 VIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPELIEI 215

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 216 RGEVLMLKADFAALNARQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 275

Query: 247 SEIF-AKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              F A+   + L   + LGF + +           ++++Y +M+  R TLPY+IDG+V 
Sbjct: 276 QGGFIAEEHLQELSYCKELGFSLPDSNFGCFPNIDEVLAFYEQMQQKRPTLPYEIDGMVV 335

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 336 KVNSLAQQEKLGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 395

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 396 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 444

Query: 425 A---------------------------QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457
                                       +P+  P+ CPIC S + R+         A  R
Sbjct: 445 ETKISVSDGLQDDLFAETPSETRSEPIHKPYRLPTHCPICHSEIEREEGE------AVAR 498

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ--- 514
           C+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ L    
Sbjct: 499 CSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLDIPT 554

Query: 515 -RRQQTSTTKI-------------------------ENILGFGDVSVTNLYDSINKRRNI 548
            ++ + +  K                          +N+         N+   I   +  
Sbjct: 555 LQKMKETADKASANEEEPSNSEIEDFEGETGNTLLAKNVKKQPTKWAENILAGIEASKTP 614

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------- 583
            L RF+F+LGIR+VG   A++LA+ + + +N                             
Sbjct: 615 ELARFLFALGIRYVGERTAKTLAQAFGTLENVRHAPEPILACLPDIGTVVARSIAHFFAQ 674

Query: 584 ------INNIIAHNNDDWLSLIRVP-----------------LVGDIIAQAIVE------ 614
                 I+ ++A         + +P                  + +  A A+ E      
Sbjct: 675 KAQQAMIDELLAVGVAPQSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSI 734

Query: 615 ---------------FYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVF 654
                          +   P+N   +E +    +              ++  +  K  V 
Sbjct: 735 EGLQTDKALPADWQTWRNKPQNATLLENMKTFFAQTRSNLQDETISDGINEAVAGKTFVL 794

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKAQ LGV +
Sbjct: 795 TGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGVAV 848


>gi|325283108|ref|YP_004255649.1| DNA ligase [Deinococcus proteolyticus MRP]
 gi|324314917|gb|ADY26032.1| DNA ligase [Deinococcus proteolyticus MRP]
          Length = 676

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/703 (31%), Positives = 357/703 (50%), Gaps = 46/703 (6%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L  E+  H+  YY+   P I D EYDAL R+  A     P+ A +     P  ++GG +
Sbjct: 15  RLRAELERHNRAYYEQDNPEIPDDEYDALARQVRAAEAEHPEWAAA---GSPTERVGGAV 71

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIFFTLEPKIDGTMITI 141
           + +   V H  P  SL+  ++  ++  +  R+ R      D     FT E KIDG  + +
Sbjct: 72  SAAFEPVDHPTPMTSLDNAFDDSEMAGWQERLARALNLPPDHGDFAFTGELKIDGLSVNL 131

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            Y  G+  +AA RG+G +GE V+A +  IP IP+ L   +   +EVRGEVY+++ DF A 
Sbjct: 132 YYRDGELQWAATRGNGRTGEKVTAQLLTIPGIPQQLP-GLSGELEVRGEVYLAREDFAAY 190

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQK 260
           N     +G     NPRN A+G LR+ +P    R  L    + LG+   + A+ Q+E+L+ 
Sbjct: 191 NARAEELGEPLLKNPRNGAAGALRQKDPELTRRRGLKAIFYSLGRRDGVPARTQWEVLEW 250

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +   GFP +   R   +    ++Y+ EM + R+ LP+D DG V K+D   +Q++ G  +R
Sbjct: 251 LAAQGFPTSPYSRPLGSLAEALAYHAEMTAARAALPFDADGTVIKLDSLRVQEEAGFTSR 310

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I++KF  ++  T L  I + +GRTG +TP+A L P  I G+ ++ ATLHNED+++
Sbjct: 311 APRWAIAYKFPVEEVETLLESISVGVGRTGKITPLAHLSPRLIEGSTVSRATLHNEDFVR 370

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            +           D+RVGD V+V+++G VIP+++ ++ + R  DAQPF+FP+ CP C   
Sbjct: 371 DM-----------DLRVGDTVVVRKSGGVIPQIMRVLPDRRPADAQPFAFPAECPECGHT 419

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +VR       +  A   C    AC AQQ ERL +FVSR+A +I G+G++ +         
Sbjct: 420 LVRS------EGDANTYCPNP-ACPAQQFERLSYFVSREAMDIRGVGERLIRQLLAE--- 469

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              +R  AD + L   Q +   +       GD    N+   +   +   L R I +LGI+
Sbjct: 470 -GLVRDAADFYFLSAEQLSGLERS------GDKKAANILAQLEASKTRPLWRVINALGIQ 522

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG  ++++LA  + + +         +A              +GD+IA+ +V    +  
Sbjct: 523 HVGTRVSQALAAEFGTLERLLAADAPAVAAVP----------GLGDVIAENLVAALHDGA 572

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
               +  L +E         +   + +     V TGTL +  R   +  +   GA V+  
Sbjct: 573 MQNLLRRL-EEAGVRPPETVQERGTALSGLSFVITGTLSQP-REYYKALLEAQGARVTGS 630

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++ KT  ++ G++ GSKL+KAQQLG  +++E     LL +   
Sbjct: 631 VTGKTSFLLAGEDAGSKLDKAQQLGTAVLDEAGLEALLTERGV 673


>gi|330751993|emb|CBL80506.1| DNA ligase [uncultured Polaribacter sp.]
          Length = 665

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/703 (30%), Positives = 358/703 (50%), Gaps = 48/703 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             +++  L ++++ H+  YY      I D ++D   +  + +    P    S   N P  
Sbjct: 3   VEEKIKELREQLNNHNYNYYVLDNATISDFDFDRTLKELEKLEKENPIFFNS---NSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG +  +   + H     SL+  ++ EDL  +  R+ +       + + FT E K DG
Sbjct: 60  RVGGTVTKNFNTIVHKNRMYSLDNSYSKEDLLDWEKRVEKVLG---VSELEFTCELKFDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I + YE G+FV A  RGDG  G++V+  I+ I +IP  +        E+RGE+ +  +
Sbjct: 117 ASINLTYENGQFVKAVTRGDGFQGDEVTNNIKTIRSIPLSIKEEFISNFEMRGEIVLPID 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F+ +N+E I  G + Y NPRN ASG L+  +  ++  R L+  ++ +  T E   K  +
Sbjct: 177 GFIKMNEERILNGEEVYRNPRNTASGSLKLQDSGEVAKRPLDCLLYQMV-TEERKYKTHF 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+  R +GF V   +  A +   +  + N   + R+ LPY+ DG+V KV+    Q++L
Sbjct: 236 ESLENARKVGFKVPKTITLAKSIDAVFDFVNYWDAKRNDLPYETDGIVIKVNNLQQQEEL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++PRW I++KF   Q ST L +I  Q+GRTG +TPVA L PV + G  +  A+LHN
Sbjct: 296 GYTAKAPRWAIAYKFKAAQVSTILNEITYQVGRTGAITPVANLNPVQLAGTTVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           DIR  D V V++ GE+IPK++ +   +R  ++ P  + + CP
Sbjct: 356 ADQIERL-----------DIREKDTVFVEKGGEIIPKIIAVDHTKRSENSAPTMYATNCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR       +  A H C     C+ Q   R++H++SR A +I+GLG + +D   
Sbjct: 405 ECDTALVRT------EGDAKHYCPNEFGCAPQITGRIQHYISRKAMDIDGLGGETVDLLR 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K       I+  AD++ L   Q     ++       + S  N+   I K + I  E+ +F
Sbjct: 459 KE----GLIQNYADLYDLNVAQIIPLERMA------EKSAQNMISGIEKSKEIPFEKVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ LAK++ S  +               +  LI+   +GD IAQ+I++F
Sbjct: 509 ALGIRFVGETVAKKLAKHFKSIDHLMTAT----------FEELIKADEIGDRIAQSILDF 558

Query: 616 YQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             +  NI  +  L              +N +  ++ +  V +G   ++ R++ ++ +   
Sbjct: 559 SSDLGNIQLINRLKSYGLQLEVSAAVLENQTEILQGQIFVVSGVFYQMSRNELKKAIEDN 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
           G  VS+ +S+KT+ I+ GDN G SKL KAQ LG+ I++E+ F+
Sbjct: 619 GGKVSSSISKKTNFIVAGDNMGPSKLTKAQDLGISIISEQDFI 661


>gi|218754780|ref|ZP_03533576.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis GM 1503]
 gi|289763195|ref|ZP_06522573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM
           1503]
 gi|289710701|gb|EFD74717.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM
           1503]
          Length = 690

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/724 (28%), Positives = 333/724 (45%), Gaps = 46/724 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +  ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L  
Sbjct: 4   PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61

Query: 68  SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +GG         V H    LSL+  +  ++L  +  RI+           
Sbjct: 62  -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIP 182
            +  E KIDG  +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +P
Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241
           E++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P    R  L    H
Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           GLG          ++    +R  G PV+     A    G+    +     R  + ++IDG
Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI  +         V   +  
Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIPGERRPHRADHAVCVHDAG 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR-VGDRVLVKRAGEVIPKVVDIIVNE 420
             G   +  ATLHN              +G  D+R  GD    +R     P+V+  +V  
Sbjct: 357 EGGRVDVGQATLHNASR---------SAQGRADLRHRGDPQGRRRD----PEVLGPVVEL 403

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    + F  P+ CP C S +         +  A  RC     C  Q  ER+ H  SR+ 
Sbjct: 404 RDGSEREFIMPTTCPECGSPL-----APEKEGDADIRCPNARGCPGQLRERVFHVASRNG 458

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IE LG +      +++     I    ++F L  R    T       G    +   L  
Sbjct: 459 LDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLV 514

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +++K +   L R + +L IRHVG   AR+LA  + S    A    + +A           
Sbjct: 515 NLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQLAA---------- 564

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           V  VG  IA A+ E++    +   V+         +   +++V   +    +V TG+L  
Sbjct: 565 VEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTG 624

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL  
Sbjct: 625 FSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLAD 684

Query: 721 YNTT 724
              +
Sbjct: 685 GPAS 688


>gi|317485271|ref|ZP_07944151.1| DNA ligase [Bilophila wadsworthia 3_1_6]
 gi|316923397|gb|EFV44603.1| DNA ligase [Bilophila wadsworthia 3_1_6]
          Length = 698

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/724 (34%), Positives = 393/724 (54%), Gaps = 54/724 (7%)

Query: 9   IEALSIEQA-RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           +++L +E A +K L  L   + YH+  Y+    P I D EY+A  +    +    P+   
Sbjct: 6   LQSLLVEDADKKRLEELRAFVIYHNHRYHTLDAPEITDDEYNAAFQELLRLEERHPEW-- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P N+IGG++  SL    H+    SL+ +++ E+ + F+ R+    +  +     
Sbjct: 64  -RSPDSPTNRIGGQVLSSLETKAHTRRMYSLDNVFDAEEWQGFLKRLDNAQEGLEH---A 119

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           F  +PK+DG  + + YE G+FV A  RGDG  GE V+  ++ +  +P+VL  + PE +EV
Sbjct: 120 FWCDPKMDGLALELVYENGRFVEALTRGDGEVGELVTEAMQTVRNLPKVLHGDAPERLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK- 245
           RGEV   + DF  LN+ +     K +ANPRNAA+G +R+L+ +   +R L F  +G G  
Sbjct: 180 RGEVIFRRRDFALLNERLRKENLKTFANPRNAAAGSIRQLDTSVTASRPLRFLAYGFGDV 239

Query: 246 --TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                       E++ ++R  GF    G R       + +YY  +   R +L Y+IDG+V
Sbjct: 240 RFGGVQPWSTYEEVMGRLRDFGFETPPGGRLCRGSEEVEAYYASLSEKRESLAYEIDGVV 299

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+++   Q+ LG  AR+PR+ ++ KF  +QA+T LLDI +Q+GRTG+LTPVA LEPVN+
Sbjct: 300 MKLNDLEAQEALGYTARAPRFAVAWKFPAQQATTLLLDITVQVGRTGVLTPVAELEPVNV 359

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG L++ ATLHNED I+            RD+R+GDRV+V+RAG+VIP+VV  +++ER P
Sbjct: 360 GGVLVSRATLHNEDEIRN-----------RDVRIGDRVVVQRAGDVIPEVVRAVLSERAP 408

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+QPF FP  CP C     R           A RC   ++C A   + L HFVS+   +I
Sbjct: 409 DSQPFVFPHVCPSCGQAASRLEGE------VAWRCVN-VSCPAMIRQSLAHFVSKAGLDI 461

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++ ++    S      ++ PAD+FTL+  +     ++      G    T   DS++
Sbjct: 462 EGLGQRWIELLVASGR----VKTPADLFTLRVDELLHYERM------GVKLATKFVDSLD 511

Query: 544 KR-RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           +  +  +L+R + +LGIRHVG + A++LA  Y             +            +P
Sbjct: 512 RAKKEATLQRLLCALGIRHVGEQTAKTLAATYADMDVLRAASPEELQ----------NLP 561

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQ 659
            +G  +A +I  F+ +  N+  +  L +     + +     S     +  +K++FTG+L 
Sbjct: 562 DIGPEVASSIKAFFDDEPNVALLARLRELGLWPVRQEAAVASMPVGPLAGQKILFTGSLS 621

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            I R KAQ+     GA ++  +SR+ ++++VGD PGSK EKAQ LG++I++E  FL LLQ
Sbjct: 622 -IPRSKAQQMAENAGAEIAGSVSRRLNLLVVGDEPGSKREKAQALGIRIVDEAGFLALLQ 680

Query: 720 QYNT 723
             N 
Sbjct: 681 ADNE 684


>gi|291166519|gb|EFE28565.1| DNA ligase, NAD-dependent [Filifactor alocis ATCC 35896]
          Length = 668

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/715 (32%), Positives = 378/715 (52%), Gaps = 58/715 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A K++  L + + Y+   YYQ   P I D+EYD++ +   ++    P L  +E    P 
Sbjct: 2   DAEKKIKLLRERLEYYSAKYYQEDAPEISDAEYDSMMKELMSLEKEHPSLRSAE---SPS 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+GG  +    +  H +P LSL   ++ E+L +F  +I           I + +E KID
Sbjct: 59  EKVGGSYSKKFAEYVHRVPLLSLSNAFSYEELLEFDQKIRERC-----GDISYCVELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+KGKF++ A RG+G  GE+V+  +  I TIP+ L  N    + VRGEV++ K
Sbjct: 114 GLSVALEYKKGKFIHGATRGNGQQGENVTDNLNEIVTIPKEL--NQKVDLVVRGEVFLPK 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS------- 247
           + FL LN++   +G   +ANPRNAASG LR+L+      R L+ F+  + +         
Sbjct: 172 DRFLKLNEQQEDLGLPLFANPRNAASGSLRQLDSNITKDRNLDIFIFNVQEWMDNSDKEK 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E       + L  +  LGF   +      +   ++ +       R  L +DIDG+V KVD
Sbjct: 232 EQELNSHSKQLNYLDDLGFKTISPREHCESMEKVIEFIKYWTEHREELLFDIDGIVIKVD 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E + ++ LG+ A++PRW I++KF  +Q  T +  I +Q+GRTG+LTP+A L PV I G+ 
Sbjct: 292 ELNKREILGQTAKAPRWAIAYKFPAEQKETTIEAITVQVGRTGVLTPIAELTPVLISGST 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNEDYI             +DIRVGDRV+V++AGE+IP+V  ++ ++R      
Sbjct: 352 VSRATLHNEDYIAM-----------KDIRVGDRVIVQKAGEIIPEVHAVMKDKRDGTEVV 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C +   +           A +CT   AC AQ   R+ HFVS+ A +I+  G
Sbjct: 401 FHMPHTCPSCGAATQKIDGE------VAVKCTN-FACPAQLKRRMIHFVSKSAMDIDNFG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +   +++      I+  ADI+ L+ +          + GF   S +NL  SIN  ++
Sbjct: 454 PSIVSSLYEN----GLIKNIADIYLLKEKDLL------QLNGFAKKSASNLISSINHSKS 503

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L + + +LGI  VG + A+ L+K + S +   +           +   L+R+  +G  
Sbjct: 504 RNLNQLLVALGIDFVGEKAAKVLSKNFSSLEELEKA----------NLDDLMRIEEIGLK 553

Query: 608 IAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            AQ+I+ ++Q   N   +E L++    + SI   ++N S     KK V TGTL+ ++R +
Sbjct: 554 TAQSILNYFQLEENRAVLERLVEYGVNTKSISGTDQNSSKVFSGKKFVLTGTLEGMKRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +   G  V + +S   D ++ GD+PGSKL+KAQ+L + I+ +++FL ++ +
Sbjct: 614 AKKIIETCGGEVMSAVSTSVDYLLAGDSPGSKLKKAQELNIPILTKDEFLVMVNE 668


>gi|319638552|ref|ZP_07993314.1| DNA ligase [Neisseria mucosa C102]
 gi|317400301|gb|EFV80960.1| DNA ligase [Neisseria mucosa C102]
          Length = 822

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/834 (28%), Positives = 385/834 (46%), Gaps = 170/834 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+             +
Sbjct: 62  VGGEPLSGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLN---GEKPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
            +EPK DG  I++ Y  G    AA RGDG +GEDV+  ++ +  IP  L   NIPE+IE+
Sbjct: 119 VIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPELIEI 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAALNARQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SEIF-AKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              F A+   + L   + LGF + +G          ++++Y +M+  R TLPY+IDG+V 
Sbjct: 239 QGGFIAEEHLQELSYCKELGFSLPDGNFGCFPNIDKVLAFYEQMQQKRPTLPYEIDGMVI 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLTQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A---------------------------QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457
                                       +P+  P+ CPIC+S + R+         A  R
Sbjct: 408 EANVTVSDGLQDDLFAKTPSETQAKPLHKPYRLPTHCPICRSEIEREEGE------AVAR 461

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517
           C+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ L    
Sbjct: 462 CSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLDIPT 517

Query: 518 QTSTTKIENILGFGD-----------------------------VSVTNLYDSINKRRNI 548
                ++ +     +                                 N+   I   +  
Sbjct: 518 LQKMKEMADKASANEEEPSNSEIGDFEGETGNTLLAKNNKKQPTKWAENILAGIEASKTP 577

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------- 583
            L RF+F+LGIRHVG   A++LA+ + + ++                             
Sbjct: 578 ELARFLFALGIRHVGERTAKTLAQAFGTLEHVRHAPEPILACLPDIGTVVAHSIAHFFAQ 637

Query: 584 ------INNIIA-----------------HNNDDWLSLIRVPLVGDIIAQAIVE------ 614
                 I+ ++A                      W++ +    + +  A A+ E      
Sbjct: 638 EAQQAMIDELLAVGVVPQSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSI 697

Query: 615 ---------------FYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVF 654
                          +   P+N   +E +    + ++   +       ++  +  K  V 
Sbjct: 698 EGLQTDKALPADWQAWRSKPQNAALLENMKTFFAQTLSNLQDETISDGINEAVAGKTFVL 757

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKAQ LG+ +
Sbjct: 758 TGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGIAV 811


>gi|322411466|gb|EFY02374.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 652

 Score =  685 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/702 (31%), Positives = 365/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  + + ++ +   YY    P + DSEYD L R    + + +P+       + P   
Sbjct: 2   KKRIREVTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVELENQYPEHVLQ---DSPTQN 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+     K +     +  E KIDG 
Sbjct: 59  VGGTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRV-----KSEFPDATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G+    A RGDG  GE+++  ++ I  IP+VL    P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGQLQVGATRGDGSIGENITENLKQIKDIPQVL--PQPLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N+E    G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q  
Sbjct: 172 FKAINEERQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLY--QEASPTTRSQQDH 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +  LGF VN     +++   I ++   +++ R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLKALADLGFSVNQRYHLSSSMDEIWNFIQTVEAEREQLAYDIDGIVIKVNNLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    +L +D  +GRTG++TP A L  V + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTSVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V++ +AG++IP V+ +I ++R  +  P   PS CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVIIYKAGDIIPAVLRVISDKR-QEQVPMWIPSQCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS +V   +        A RC   L C +     L+HF SR+A NI GLG   ++  F 
Sbjct: 398 CQSDLVHFEDE------VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLF- 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L +          ++ G  + S   L  +I   ++ S E+ +F 
Sbjct: 450 ---LAGLVHDVADIYKLTKEDLL------HLDGIKEKSAEKLLAAIETSKSNSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+GA+ +R + +   + ++        IA           +  +G +IA+++V+++
Sbjct: 501 LGIRHIGAKASRLILETCGNIEHLLTVREEDIA----------TIDGLGMVIAKSLVQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           Q    I  VE      V+ +    + + ++E+    +V TG L+K+ R+ A+  +  LGA
Sbjct: 551 QQDSAILLVEELKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KT+++I G + GSKLEKAQ LG++I  EE    L
Sbjct: 611 KVTGSVSKKTNLVIAGSDAGSKLEKAQALGIRIEGEEWLEQL 652


>gi|24379931|ref|NP_721886.1| NAD-dependent DNA ligase LigA [Streptococcus mutans UA159]
 gi|81451132|sp|Q8DT49|DNLJ_STRMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24377912|gb|AAN59192.1|AE014986_3 DNA ligase [Streptococcus mutans UA159]
          Length = 652

 Score =  685 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/702 (31%), Positives = 355/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L Q ++ +   YY    P + D+EYD L R    +   FP+      PN P ++
Sbjct: 2   KERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDIL---PNSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K  H  P  SL+  ++ E+L  F  RI   + + D     +  E KIDG 
Sbjct: 59  VGDLVLDGFEKYRHEYPLFSLQDAFSREELDAFDRRIKAEFPQAD-----YLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G+    A RGDG  GE+++  ++ +  IP  L  NI   + VRGE Y+ K  
Sbjct: 114 SISLTYVNGRLRVGATRGDGTVGENITENLKRVRDIPLHLPENI--DLTVRGECYLPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E    G   +ANPRNAA+G LR+L+   +  R L  F++   +     A  Q  
Sbjct: 172 FKTINAERRENGETEFANPRNAAAGTLRQLDTKVVAKRKLATFIY--QEAGPTAASSQEA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+    LGF VN     +++   I  +  ++   R+ L YDIDG+V KV+  +LQ+ LG
Sbjct: 230 VLESFAKLGFTVNPRHIISSSMDAIWQFIEDVAKERAELAYDIDGVVIKVNSLALQEALG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++ +  +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKTAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ N+R     P   P+ CP 
Sbjct: 350 DYI-----------AEKDIRIGDIVVVYKAGDIIPAVLHVVENKRDQQV-PLPIPTVCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++   +        A RC     C AQ  E+L HF SRDA NI GLG   ++  F 
Sbjct: 398 CQSELIHFEDE------VALRCVNPR-CPAQLKEKLIHFASRDAMNIIGLGPAIVEKLFT 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +E     I   ADI+ L             + G  + S T LY +I   +  S E+ +F 
Sbjct: 451 AE----LICDVADIYQLTPENLM------QLEGIKEKSATKLYKAIQASKANSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + + S +  A    + IA  +           +G +IA+++  ++
Sbjct: 501 LGIRHVGSKASRLLMERFESLEQLAAADFDDIAAID----------GLGIVIAESLKTYF 550

Query: 617 QNPRNIC-AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                    +E     ++ +    +    + +    +V TG L  + R +A+E +  LGA
Sbjct: 551 ATAGAQKLLIELKTAGLNLTYLGKKTASDAALTGMTIVLTGKLANLTRSQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KT ++I G + GSKLEKA+ LG++I +E     L
Sbjct: 611 NVAGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDEAWLESL 652


>gi|124024594|ref|YP_001018901.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
           9303]
 gi|166216228|sp|A2CDS6|DNLJ_PROM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123964880|gb|ABM79636.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9303]
          Length = 696

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 209/726 (28%), Positives = 345/726 (47%), Gaps = 65/726 (8%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           + P      E+A    + L Q ++     YY    P + D+ YD L R    +      L
Sbjct: 1   MTPTSRTPPERA----AELRQLLNQAAHSYYVLDTPTMEDAVYDRLYRELLDLEVKDSSL 56

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ-----K 120
                P+ P  +IGG        V H IP LSL+  +N+++L  +  R+ +        K
Sbjct: 57  L---TPDSPTQRIGGAPAQGFASVPHRIPLLSLDNAFNVDELTGWYVRLVKLLGYQTNPK 113

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL- 179
                +    E KIDG  + + YE G  + AA RGDG +GE+++A +R I +IP  L L 
Sbjct: 114 TPQPDLSMVGELKIDGNALALSYEHGVLIRAATRGDGANGEEITANVRTIASIPLRLQLV 173

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNF 238
           + P  +EVRGE +I  + F  +N      G   +ANPRNA +G LR+L+P  +  R L+F
Sbjct: 174 HPPAWLEVRGEAFIPNSTFADINTARGERGDVAFANPRNACAGTLRQLDPKVVASRQLDF 233

Query: 239 FVHGLGKTSEIFAK--------GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
           F + L       AK         Q+ +LQ ++ +GF VN           +  ++     
Sbjct: 234 FAYTLHLPDNWQAKADDPASPMNQWAVLQWLQAIGFKVNPNTALLTDLTAVEHFFKLWDE 293

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  LPY  DG+V K+++  LQ+  G   ++PRW I+ K+A ++A ++LL +  Q+GRTG
Sbjct: 294 ARHQLPYATDGVVVKLNDLQLQETAGFTQKAPRWAIALKYAAEEAPSKLLRLTCQVGRTG 353

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVA  E + + G  ++ ATLHN + +  L           D+  GD ++V++AGE+I
Sbjct: 354 AVTPVAEFEAIPLAGTSVSRATLHNANRVSEL-----------DLHSGDTIVVRKAGEII 402

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+V+ ++   R   AQ    P  CP C+S +VR+         AA RC    +C A    
Sbjct: 403 PEVIGVLRELRPAGAQTLKLPHICPECRSDLVREEGE------AATRCVNN-SCPAILRG 455

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            L+H+VS+ A +++GLG + ++           ++  AD++ L+     S  ++ N    
Sbjct: 456 TLRHWVSKGALDVDGLGSKLIEQLVNR----GLVQSIADLYALEASLLASMDRMGN---- 507

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              S  NL  ++   ++    + ++ LGI HVG   A++LAK + S    A         
Sbjct: 508 --KSTENLITALQASKSKPWHKQLYGLGIHHVGEVNAKALAKKFPSAATLANAACKA--- 562

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---- 646
                  +  V  VG+ IAQ++ +++  P N   +  L +         ++         
Sbjct: 563 ----PEQITSVFGVGNEIAQSLQQWFATPANQELLAKLKQLGISLEANEDELAHDTDQKQ 618

Query: 647 ----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
               ++ +  V TGTL  + R +AQ  +   G  V++ +S+ T  ++ G   GSKL KA+
Sbjct: 619 RTVSLQGQTFVLTGTLPTLSRSEAQALIEAAGGKVNSSVSKNTSYVVAGAEAGSKLNKAE 678

Query: 703 QLGVKI 708
           +L V +
Sbjct: 679 KLRVTV 684


>gi|261380488|ref|ZP_05985061.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
 gi|284796739|gb|EFC52086.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
          Length = 822

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/834 (29%), Positives = 391/834 (46%), Gaps = 170/834 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+             +
Sbjct: 62  VGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLN---GEKPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
            +EPK DG  I++ Y  G    AA RGDG +GEDV+  ++ +  IP  L   NIPE+IE+
Sbjct: 119 VIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLYGENIPELIEI 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAALNARQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SEIF-AKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              F A+   + L   + LGF + +G        + ++++Y +M+  R TLPY+IDG+V 
Sbjct: 239 QGGFIAEEHLQELGYCKELGFSLPDGNFGCFPNINEVLAFYEQMQQKRPTLPYEIDGMVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A---------------------------QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457
                                       +P+  P+ CPIC S + R+         A  R
Sbjct: 408 ESNISVSDGLQDDLFAETPSETRAEPLHKPYRLPTHCPICHSEIEREEGE------AVAR 461

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----T 512
           C+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++     T
Sbjct: 462 CSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVTQD----LVRHFADLYRLDIPT 517

Query: 513 LQRRQQTS--------------TTKIENILG----------FGDVSVTNLYDSINKRRNI 548
           LQ+ ++T+                  EN  G                 N+   I   +  
Sbjct: 518 LQKMKETADKASVNEEEPSNSEIEDFENESGNALLSKTSKKQPTKWAENILAGIEASKTP 577

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------------------------- 583
            L RF+F+LGIRHVG   A++LA+ + +  N                             
Sbjct: 578 ELARFLFALGIRHVGERTAKTLAQAFGTLGNVRHAPEPILACLPDIGTVVAHSIAHFFAQ 637

Query: 584 ------INNIIA-----------------HNNDDWLSLIRVPLVGDIIAQAIVE------ 614
                 I+ ++A                      W++ +    + +  A A+ E      
Sbjct: 638 EAQQAMIDELLAVGVALQSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSI 697

Query: 615 ---------------FYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVF 654
                          +   P+N   +E +    + ++ + +       ++  I  K  V 
Sbjct: 698 EGLQSDKALPADWQTWRSKPQNAALLENMKTFFAQTLSKLQDETISDGINETIAGKTFVL 757

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKAQ LGV +
Sbjct: 758 TGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGVAV 811


>gi|190575033|ref|YP_001972878.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia K279a]
 gi|254781423|sp|B2FKJ1|DNLJ_STRMK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190012955|emb|CAQ46587.1| putative DNA ligase [Stenotrophomonas maltophilia K279a]
          Length = 821

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/850 (30%), Positives = 406/850 (47%), Gaps = 168/850 (19%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S   A +    L ++I+  +  Y++   P I D +YD + R  +A+    P+LAR+   
Sbjct: 1   MSPSPA-ERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G   +    +V H++P LSL   ++ E++  F+ RI     ++   S+ F+ E
Sbjct: 57  DSPTQQVGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRR---SLRFSAE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  I++RYE G FV  A RGDG +GEDV+A +R I  IP+ L   + P+++EVRGE
Sbjct: 114 PKMDGLAISLRYEDGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           VY+++ DF A N+     G K  ANPRNAA+G LR+L+P     R L+FF +G G+    
Sbjct: 174 VYMARADFEAYNERARLQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGG 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                    L ++   GFPV+   +      G++ YY  +   R  LP+DIDG+VYK+D+
Sbjct: 234 ELPDTHSGTLAQLGAWGFPVSELCKVVEGTDGLLGYYRTIGERRDGLPFDIDGVVYKLDD 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ +G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL PV + G ++
Sbjct: 294 RAGQQAMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L           D+RVGD V+V+RAG+VIP+VV +I++ R     P+
Sbjct: 354 SNATLHNADQIARL-----------DVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPW 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C S +VR+      +  AA RC+G L+C AQ+ E + HF SR A +I+GLG 
Sbjct: 403 QMPTRCPVCGSEIVRE------EGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGD 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK------------------------- 523
           + ++        A  ++  AD++ L R                                 
Sbjct: 457 KYIETLVD----AGIVKSVADLYRLSRDTLLHLKLVLDAEEPSALAAALKLHLPAEGSGA 512

Query: 524 --------IENILGFG------------------DVSVTNLYDSINKRRNISLERFIFSL 557
                     N  G+                        NL  +I+  R  +LER +F+L
Sbjct: 513 VLNAVLKLDGNDPGWRAQALAQPASFEWNTKKIATKWADNLIAAIDASRAATLERVLFAL 572

Query: 558 GIRHVGA--------------------------------EIARSLAKYYLSYQNFAQEIN 585
           GI HVG                                 E+ARSL  ++   Q   Q I+
Sbjct: 573 GIEHVGESTAKALAQWFGDLELIRHLPWPLFKRVPDIGGEVARSLG-HFFEQQGNQQAID 631

Query: 586 NIIA-------------------HNNDDWLSLIRVPLVGDIIAQAIV------------- 613
           +++                     +    L    +P +  + A+ +V             
Sbjct: 632 DLLQVGQVRIADVHAPSAKLREGLDLAQLLVESEIPGITRLRAEKLVAALPGAQAVLDAE 691

Query: 614 ------------------EFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKL 652
                             E+     +   +   E  ++E+        + V+  ++ + +
Sbjct: 692 HGQFVNAGLPDDTARGLAEWLDADGHGAMLLAAENAMREILAKAPALAEIVAGPLDGQTV 751

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL ++ R  A+E +  LGA VS  +S+KT  ++ G   GSKL+KAQ LGV + +E+
Sbjct: 752 VLTGTLAQLTRDAAKERLEALGAKVSGSVSKKTSFVVAGTEAGSKLDKAQSLGVSVWDED 811

Query: 713 QFLFLLQQYN 722
           + L  L ++ 
Sbjct: 812 RLLAYLAEHE 821


>gi|329116783|ref|ZP_08245500.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020]
 gi|326907188|gb|EGE54102.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020]
          Length = 654

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/702 (30%), Positives = 360/702 (51%), Gaps = 52/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L   ++ +   YY    P + D +YD L      +   +P+ A     + P   
Sbjct: 2   EKRIKELTDLLNQYRLEYYTNDSPSVSDQDYDRLYHELVQLEEEYPEYALK---DSPTQA 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H+ P  SL+  ++ E+L  F  R+       +  S  +  E KIDG 
Sbjct: 59  VGGLVLTGFEKYQHAYPLYSLQDAFSPEELYSFDRRVKA-----EFPSAEYVAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y++GK V  A RGDG  GE+++  I+ I  IP  L  +    I VRGE Y+S+  
Sbjct: 114 SISLNYQEGKLVTGATRGDGSIGENITENIKRIKDIPHQL--DQAIDITVRGEAYMSRKS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E    G   +ANPRNAA+G LR+L+ + +  R L  F++   + S      Q  
Sbjct: 172 FQQINLERQENGETEFANPRNAAAGTLRQLDTSIVAKRELASFLY--QEASPTDELSQEL 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+K+  LGF VN       +   I  +   ++  R  L YDIDG+V KV+  ++Q++LG
Sbjct: 230 VLEKLDNLGFSVNPRRLITQSMDEIWDFIQAIEIERDQLSYDIDGIVIKVNSLAMQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW +++KF  ++    +  +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTIKAPRWAVAYKFQAEEKEAEIRSVDWTVGRTGVVTPTANLTPVKLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V +AG++IP V+ ++ ++R  D++P   PS CP 
Sbjct: 350 DYIE-----------HKDIRIGDTVIVYKAGDIIPAVLRVVTDKRRDDSEPMPIPSLCPS 398

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++   +        A RC   L C       L+HF SR+A NI GLG   ++  + 
Sbjct: 399 CQSELIHFEDE------VALRCINPL-CPNLIQRSLEHFASRNAMNISGLGPAIVEKLYS 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      I   ADI+ L   Q  +        G  + S   L  +I   +  S ++ +F 
Sbjct: 452 AN----LIHDVADIYKLNLEQLLALE------GIKEKSAEKLLTAITNSKKNSADKLLFG 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ +R L + +   ++  +           +   + ++  +G +IA++I  ++
Sbjct: 502 LGIRHVGAKASRILLEEFGDIESLVEA----------NQEEISQIDGLGTVIAKSIARYF 551

Query: 617 QNPRNICAV-EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +       + E     ++ S    + + ++++    +V TG L+++ R++A+  +  LGA
Sbjct: 552 EKAEAQLLLSELKSAGLNLSYLGKKIDKTAKLFGMTVVLTGKLEQLTRNEAKAKLESLGA 611

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V++ +S+KTD+++ G + GSKL+KA  LG++I +E+  + L
Sbjct: 612 KVTSSVSKKTDLLVAGSDAGSKLDKASTLGIRIEDEDWLVNL 653


>gi|152992057|ref|YP_001357778.1| NAD-dependent DNA ligase LigA [Sulfurovum sp. NBC37-1]
 gi|166216278|sp|A6Q7G2|DNLJ_SULNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151423918|dbj|BAF71421.1| DNA ligase, NAD-dependent [Sulfurovum sp. NBC37-1]
          Length = 648

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/700 (30%), Positives = 357/700 (51%), Gaps = 57/700 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E     + +      YY    P+  D EYD L           PD A     + P  ++G
Sbjct: 5   EYKEKVKTLKKWAYAYYVEDNPVATDEEYDRLYHEVLDYEMKHPDKALE---DSPTKRVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G +     K  H     S+E +++ E+++ ++ R+ +     +     +  EPK DG  +
Sbjct: 62  GIVRDEFTKAKHIKRMWSMEDVFSKEEVQDWLDRVEK-----NVGECDYFCEPKFDGASM 116

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y+ GK + A  RGDG  GE+V+  +R I ++P  L ++   +IE+RGEV I K+DF 
Sbjct: 117 NLLYDDGKLLRAITRGDGVVGEEVTDNVRTIRSVP--LVIDYKGLIEIRGEVVIRKDDFE 174

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            +N+E +  G  P+ANPRNAA+G LR+L+ +    R L F+  G+G+ + +  K   E +
Sbjct: 175 QINEERLKAGEAPFANPRNAAAGSLRQLDSSVTAKRRLVFYPWGIGENT-LDQKKLSEKM 233

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +   GF         +T   I  +Y  + S R  +P  +DG+V KVDE   Q++LG  
Sbjct: 234 EFIYGQGFLRPPYHEACHTIDNIEKFYQFLISKRDEIPMMMDGMVIKVDEIEKQEELGYT 293

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            + PRWM ++KF   +  T++  I +Q+GRTG++TPVA +EPVNI GA+++ ATLHN D 
Sbjct: 294 VKFPRWMCAYKFPAVEKVTQIRAITLQVGRTGVITPVAEIEPVNIEGAMVSRATLHNFDE 353

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+            +DIR+GD V++ R+G+VIPK+  ++++ R  D  P   P+ CP C 
Sbjct: 354 IER-----------KDIRIGDHVIIIRSGDVIPKITKVLIDRRTGDEIPVERPTHCPTCG 402

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++           A  +C   L C  + +  + HF  +   +I+GLG + ++   K  
Sbjct: 403 SELL--------DEGALIKCQN-LECPDRVINTIIHFAKKGCMDIDGLGSKIVEQLVKEG 453

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I    D+++L               GF +  ++NL D+I   +   L R I ++G
Sbjct: 454 K----IHDILDLYSLTYEDLADLE------GFKEKKISNLLDAIAASKGAPLHRLITAMG 503

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I H+G   +R+LA  +             +   +  +  ++ +  +G+ +A +++EF + 
Sbjct: 504 IEHIGEVASRALALEFG------------LGIVDAKYEDIVAIDGIGEEMANSLLEFMRV 551

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
             N   V  L   + P++ +  +   +  + K +V TGT+ +  R K +E + +LGA VS
Sbjct: 552 --NREKVLKLFNTIKPTVEKKVEAKENPFKGKIVVLTGTMSE-SRGKIKEMLEELGAKVS 608

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +S+KTD +I G++ GSKL KA+ LGV  + E++   +L
Sbjct: 609 GSVSKKTDFVIYGEDAGSKLTKAESLGVPTLTEDEMRAML 648


>gi|289663144|ref|ZP_06484725.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 833

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/846 (29%), Positives = 407/846 (48%), Gaps = 164/846 (19%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + + +L   I   +  Y+   +P + D +YD L R  +A+   +P LA     + P  +
Sbjct: 8   AQRIDALRSRIEDANYRYHVLDEPQMADVDYDRLMRELEALEAEYPQLA---SADSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G        +V H++P LSL   +N E++ +F+ RI       +     F+ EPK+DG 
Sbjct: 65  VGHLAASRFAEVRHALPMLSLGNAFNDEEVTEFVRRISERL---EVKQPLFSAEPKLDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P+++EVRGEVY+ + 
Sbjct: 122 AISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRA 181

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQ 254
            F + N +M A G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE +  +  
Sbjct: 182 AFESYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGVLPQTH 241

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L ++R  GFPV++ V       G+++YY  + + R  L +DIDG+VYK+D+ + Q++
Sbjct: 242 SAILAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQRE 301

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLH
Sbjct: 302 MGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLH 361

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ C
Sbjct: 362 NADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQC 410

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++  
Sbjct: 411 PVCGSEIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVL 464

Query: 495 FKSE-------------DPAFSIRIP-----ADIFTLQRRQQTSTTKIENIL-------- 528
             S              D    +R+         F  + R+  ++     +         
Sbjct: 465 VDSGLVQGVADIYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQLETTVVGIGV 524

Query: 529 -----------------------------GFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
                                                NL ++I   R+ +LERF+F+LGI
Sbjct: 525 DMAGEREVPPTWQADLLRAGLPKFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGI 584

Query: 560 RHVGAEIARSLAK-------------------------------YYLSYQNFAQEINNII 588
            HVG   A++L+                                ++L      Q I++++
Sbjct: 585 EHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARALGHFLDQPGNQQAIDDLL 644

Query: 589 ------------------AHNNDDWLSLIRVPLVGDIIAQ-------------------- 610
                             A +    L  + +P V  + AQ                    
Sbjct: 645 QRGVRIGDTHPPSPKLREALSFASVLEDMDIPKVTPVRAQQLAAAVDSFAALRTAGADAL 704

Query: 611 -----------AIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTG 656
                      A++++   P N     A    ++ V   +   +   +  ++ + +V TG
Sbjct: 705 QQAGVPAPVVAALLQWLDRPENAALASAAQQAMETVLARLPEADALQTGPLDGQSVVITG 764

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV I +E + L 
Sbjct: 765 TLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVDIWDEARLLA 824

Query: 717 LLQQYN 722
            L ++ 
Sbjct: 825 FLSEHG 830


>gi|195977913|ref|YP_002123157.1| NAD-dependent DNA ligase LigA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|254781421|sp|B4U2C7|DNLJ_STREM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|195974618|gb|ACG62144.1| DNA ligase LigA [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 652

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/702 (31%), Positives = 360/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DSEYD L R    +   +P        + P   
Sbjct: 2   KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILK---DSPTQL 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  RI     K       +  E KIDG 
Sbjct: 59  VGGTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRI-----KSAFPEAEYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG  GE+++  I+ I  IP+ LS  +   + +RGE Y+S+  
Sbjct: 114 SISLVYEAGILKVGATRGDGTIGENITENIKNIKDIPKRLSQAL--DVTIRGEAYMSRKA 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   +ANPRNAA+G LR+L+   +  R L  F++   +     A  Q  
Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLY--QEVGLEAADSQQR 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+++  LGF VN+    +++ + I  +   +++ R  LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 TLERLADLGFSVNSHYLLSSSMNDIWDFIQSIEATREELPYEIDGVVVKVNQLAIQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    ++ +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++  +R  +  P   P+ CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKRS-NQTPMPIPTACPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS++V   +        A RC   L C +     L+HF SR A NI GLG   ++  + 
Sbjct: 398 CQSQLVHFEDE------VALRCINPL-CPSLIQRSLEHFASRQAMNIAGLGPAVVEKLYS 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +    DI+ L      S   +  + G  + S   L  +I + +  S E+ +F 
Sbjct: 451 ----AGLVHDVTDIYRL------SLEDLLMLDGIKEKSAEKLLAAIEQSKANSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+GA+ +R + + Y   +         +A          ++  +G +I Q++V+++
Sbjct: 501 LGIRHIGAKASRLILETYGDLETLLSVTAEELA----------QIDGLGLVIGQSLVQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           Q  +    +       V+ +      +  +E+    +V TG L+K+ R +A+E + QLGA
Sbjct: 551 QQDQATQLLAELKSAGVNLAYLGQRPDRQAELFGLTVVLTGKLEKLNRTQAKEKLEQLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD+++ G   GSKL KAQQLG++I +E+  L L
Sbjct: 611 KVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652


>gi|297626017|ref|YP_003687780.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921782|emb|CBL56340.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 764

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/731 (29%), Positives = 351/731 (48%), Gaps = 62/731 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++  + L +EI    + YY   KP I D+ YD L      +   +P L     P+ P  +
Sbjct: 29  QRRHAELVKEIDDAQEAYYGRDKPFITDALYDELMLELQKLEAEYPSL---RTPDSPTQR 85

Query: 78  IGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G          +TH    LSL+ +++I++L++++TR              +  E KIDG
Sbjct: 86  VGAPQEETDFSPLTHPSQMLSLDDVFSIDELKEWMTRTEAALGHTP----EWLCEVKIDG 141

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP----EIIEVRGEVY 192
             I ++Y  G+   AA RGDG  GE+++   R I  IP+ L  +       + E RGEV+
Sbjct: 142 LAIDLQYVNGRLQTAATRGDGRVGENITPNARTIKAIPQRLRPDPAQDFLALFEARGEVF 201

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +   +F A ND++   G+  +ANPRNAA+G LR+ +P     R L+   HGLG    +  
Sbjct: 202 VPLKEFAAYNDKLADQGKPQFANPRNAAAGSLRQKDPRVTAQRPLSSICHGLGVADGLAV 261

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q +    M+  G P++   +  ++   ++ +       R  L + IDG+V KVD F+ 
Sbjct: 262 TRQSDAYAVMKAWGLPISPYNKVVHSLDEVLDFITYYGQHRHDLIHQIDGIVVKVDSFAE 321

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  +R+PRW I+ K+  ++ +TRLLDI +++GRTG +TP   +EPV + G+++++A
Sbjct: 322 QQQLGVTSRAPRWAIAFKYPPEEVNTRLLDIRVKVGRTGRVTPYGVMEPVQVAGSVVSSA 381

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   ++            + + +GD V++++AG+VIP++V  +V  R    +PF  P
Sbjct: 382 TLHNAYEVER-----------KGVLIGDMVVLRKAGDVIPEIVGPVVEMRTGAERPFVMP 430

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C +++         +     RC    +C AQ  ERL    +R AF+IE LG Q  
Sbjct: 431 THCPSCGTKL-----ASEKESDKDIRCPNSKSCPAQLRERLFSLAARSAFDIEALGYQGA 485

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTS--------TTKIENIL-----------GFGD 532
           D   +    A  +   A +F L   Q  +        T +                    
Sbjct: 486 DAILR----AGVLDNEAQLFNLTPEQLVTVPFYTRGATPRELKEPALVPPPGIRDGRVLS 541

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +   L +++   R+  L R + +L IRHVG   AR+LA  + S           +A   
Sbjct: 542 ANGRRLLENLRTARHQPLWRVLVALSIRHVGPTAARALAARFGSMDAIRAAGVEELADT- 600

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
                      VG IIA+A+ +++    ++  + A   +            +  +    +
Sbjct: 601 ---------DGVGLIIAEAVRDWFTVDWHLEILNAWAADGVSMADEKSARPAQTLRGLTV 651

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+LQ   R  A+  +T  G   +  +SR TD ++VG+N GSK  +A+QLGV +++E 
Sbjct: 652 VVTGSLQDFTRDSAKAAITDRGGKAAGSVSRHTDYVVVGENAGSKQARAEQLGVPMLDEA 711

Query: 713 QFLFLLQQYNT 723
           QF  LL+   T
Sbjct: 712 QFRELLEHGPT 722


>gi|237785838|ref|YP_002906543.1| NAD-dependent DNA ligase LigA [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758750|gb|ACR18000.1| DNA ligase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 686

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/721 (29%), Positives = 357/721 (49%), Gaps = 57/721 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + + +SL  ++ +H D YY  S+P+I D+E+D L +    +    P+LA++     P  +
Sbjct: 6   QAQWNSLAADVRHHRDLYYN-SEPVISDAEFDHLFKTLQDLEADHPELAKN---GSPTEE 61

Query: 78  IGGEMNL---------SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +G  +           +   V H     SL+ +++  +L +++ R           +  +
Sbjct: 62  VGAPVPTPTETSSAEVTFAPVRHIERLYSLDNVFSKSELLEWLHRT---------PAPTY 112

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEI 184
             E KIDG  I + Y  G+ V AA RGDG +GED++   R I  IP+ +S      +PE+
Sbjct: 113 LTELKIDGLSIDLVYRDGELVSAATRGDGLTGEDITPNARTISDIPQTISPTDEYPVPEL 172

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +EVRGEV+I   +F  +N + +  GRKP+ANPRNAA+G LR+ NP +   R L+   HG+
Sbjct: 173 VEVRGEVFIGVEEFAVINADRVEQGRKPFANPRNAAAGSLRQKNPAETAKRNLSMICHGI 232

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G         Q++    +   GF V+   ++  +   +++        R    +++DGLV
Sbjct: 233 GAREGWEPSTQHDAYTALAAWGFRVSPYTKRVTSADEVIAQMEYWGEHRHDATHEMDGLV 292

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD+ + Q+ LGE +R+PRW I++K+  ++  T L DI I IGRTG  T  A L+PV +
Sbjct: 293 VKVDDLAEQEDLGETSRAPRWAIAYKYPPEEVVTTLRDIRIGIGRTGRATTYAVLDPVLV 352

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  ATLHN   +             + + +GDRV +++AGEVIP+V+  + + R  
Sbjct: 353 AGSTVARATLHNPSEVHD-----------KGVLIGDRVTIRKAGEVIPEVLGPVADARDG 401

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             +PF F + CP C + +V+          A  RC     C  Q L R+ +   R AF+I
Sbjct: 402 SEKPFVFSTVCPECGTPLVQ-----AKADDADWRCPNTQGCPGQLLARMTYLAGRSAFDI 456

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           + LG   +    +S     ++   +++F L       T+      G  + +   L  ++ 
Sbjct: 457 DALGVSGIQDLIRS----GALTNESELFDLDESHLRLTSVFTTKAGKINATGKALLKNLE 512

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + ++  L R I +L IRHVG   AR+LA  Y S +         +A          R+  
Sbjct: 513 EAKSTELWRVIVALSIRHVGPTAARALATKYGSLEAIRSASEEELA----------RIDG 562

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG IIA ++  ++    +I  V+A            ++     +E   +V TGTL+   R
Sbjct: 563 VGSIIAASLCSWFAVDWHIKIVDAWAAAGVRMEDDKQQAQPQTLEGTTVVVTGTLEDFTR 622

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             A+E +   G   +  +S+KT+ ++VG N GSK  KA+ LG++I++E+ F  LL+    
Sbjct: 623 DSAKEAIISRGGRAAGSVSKKTNYVVVGANAGSKETKARDLGLRILDEDGFKELLETGRV 682

Query: 724 T 724
           +
Sbjct: 683 S 683


>gi|330502846|ref|YP_004379715.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01]
 gi|328917132|gb|AEB57963.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01]
          Length = 786

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/680 (33%), Positives = 352/680 (51%), Gaps = 55/680 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A + +S L  E+  H+  YY   +P + D+EYD L R   A+    P+L     P  
Sbjct: 1   MTDAAQRISELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELV---TPES 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++GGE   +  +V H +P LSL   +  +DLR F   +             D   I 
Sbjct: 58  PTQRVGGEALSAFGEVRHEVPMLSLGNAFEEDDLRAFDRSVQNGLGVSGGDLFGDGAEIE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++RYE G+ V  A RGDG +GED+++ +R I  +P  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLRYEHGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLQGEGWPQVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++ K+ F  LN     +G K +ANPRNAA+G LR+L+P    +R L F  +G+G+
Sbjct: 178 VRGEVFMPKSGFEELNARQAEIGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S      Q  MLQ+++  G P++  ++ A      + YY ++   R +L YDIDG+V+K
Sbjct: 238 VSGELPGTQVAMLQQLKAWGVPISRELKLAKGVEACLDYYRDIGQRRMSLAYDIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+    Q+QLG RAR+P W I+HKF  ++  T LLD++ Q+GRTG +TPVARL PV + G
Sbjct: 298 VNNIEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLHPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+V+ ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GVMIGDTVIIRRAGDVIPQVMAVVPERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V R          ++    + +RC G L+C AQ  + + HFVSR 
Sbjct: 407 RPVQIPEQCPVCGSAVERTQLVRRSKGKESLSEGSVYRCVGRLSCQAQLKQAIIHFVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L   Q           GF +VS   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLTFEQIIGLE------GFAEVSSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  +L RFI++LGI  VG E A+ LA+   S +   + +  ++ +         
Sbjct: 517 KAIEDSKRPALARFIYALGIPDVGEETAKVLARSLASLERVREALPQVLTY--------- 567

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +P +G  +A  I  F+++  N   + ALL E    +    +  +           G L 
Sbjct: 568 -LPDIGLEVAHEIHSFFEDEHNQQVISALLGECGLELQEEGELSAEFSAIAT--LGGMLD 624

Query: 660 KIQ-----RHKAQEYVTQLG 674
           K+         AQ+   + G
Sbjct: 625 KLNIPTVGPGAAQKLAERFG 644



 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 16/179 (8%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L   +  L I  VG   A+ LA+ + S +               DWL + +   + +  
Sbjct: 618 TLGGMLDKLNIPTVGPGAAQKLAERFGSLEGVL----------GGDWLDMRQA--LPEKQ 665

Query: 609 AQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
           A+A+ EF+ +  N      +E  L++        +K      +  +  V TGTL+ + R 
Sbjct: 666 AKAVREFFDSVENAQLACAIEQQLRDFGMHWESEKKVAEGLPLAGQTWVLTGTLEVMSRD 725

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            A+  +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E QFL  L+ Y  
Sbjct: 726 VAKGKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGVKVLDEAQFLDQLKAYGI 784


>gi|317051097|ref|YP_004112213.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5]
 gi|316946181|gb|ADU65657.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5]
          Length = 660

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/708 (34%), Positives = 373/708 (52%), Gaps = 54/708 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + R+ +  L   +   D+ YY  + PI+ D EYD L R   A+   FP    +   
Sbjct: 1   MSAAE-RERIDQLTALLQKADEAYYTLADPIMGDGEYDGLYRELRALEARFPQYVHA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IG  +        HS+P LSL   +   +L  F+ ++ R       + + FT+E
Sbjct: 57  DSPTRRIGERLEGGSRAFVHSVPMLSLGNTYEQAELEDFLRKVRR----DSGDHVRFTVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ Y  G F  AA RGDG  GE++S  IR I ++P  L +     +E+RGEV
Sbjct: 113 PKIDGVAVSLHYRDGVFSVAATRGDGLQGEEISHNIRTIRSLP--LEIPAAGAMEIRGEV 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
           YI +  F  +N + +  G   YANPRN A+G L+ L+P   +R  L  F + L       
Sbjct: 171 YIPRQAFERINQQRLEQGESLYANPRNLAAGSLKLLDPAQSSRRGLQIFCYSL---QGFP 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               ++ LQ +R  GFPV++ VRQ  +   +      ++  R  LP+DIDG V KVD+  
Sbjct: 228 HDSHFQCLQTLRDWGFPVSDLVRQCASDAEVWDAVQHIRQQRELLPFDIDGAVIKVDQLH 287

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L ++LG  A+ PR+ I++K+  +Q STRL DI  Q+GRTG++TPVA L+PV + G+ I+ 
Sbjct: 288 LHEELGTTAKIPRYAIAYKYEAQQVSTRLRDITFQVGRTGVITPVAELDPVLLAGSTISR 347

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN + ++            +DIR+GD+VL+++ G+VIPKVV  I+  R  DA     
Sbjct: 348 ATLHNFEELRR-----------KDIRIGDQVLIEKGGDVIPKVVKPIMALRSADASEVVP 396

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +    N           C   L C AQ+L  L HFVSRDA +I G+G++ 
Sbjct: 397 PENCPECGSPLHWSDN------GVHLYCQNPL-CPAQRLGALLHFVSRDAMDIAGMGEKV 449

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F         +    DI+ L         ++ ++ GFG  S  NL  S+   +   L
Sbjct: 450 VQRFLDE----GILTDIPDIYHLV------YERVASLDGFGVKSALNLQASVEASKAHPL 499

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F+LGIRHVG + A+ LA+++ S +   Q               L  V  VG+I+A+
Sbjct: 500 ERVLFALGIRHVGKKTAQLLARHFGSMERLMQA----------SIEELTAVEEVGEIVAR 549

Query: 611 AIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I  F + P ++  VEA     ++         V+S +  + +VFTG L +  R + +E 
Sbjct: 550 SIYSFLREPASVALVEALKRSGLNMESSAPRAQVASGLSGRSVVFTGKLSRP-RKEYEEM 608

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
               GA V + +S   D ++ G++ GSKL+KA++LGV I++EE+F+ L
Sbjct: 609 AQLGGARVLSGVSGSLDYLVCGEDAGSKLDKARKLGVAIIDEEEFVRL 656


>gi|225868755|ref|YP_002744703.1| DNA ligase [Streptococcus equi subsp. zooepidemicus]
 gi|225702031|emb|CAW99626.1| DNA ligase [Streptococcus equi subsp. zooepidemicus]
          Length = 652

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/702 (31%), Positives = 360/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DSEYD L R    +   +P        + P   
Sbjct: 2   KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILK---DSPTQL 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  RI     K       +  E KIDG 
Sbjct: 59  VGGTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRI-----KSAFPEAEYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG  GE+++  I+ I  IP+ LS  +   + +RGE Y+S+  
Sbjct: 114 SISLVYEAGVLKVGATRGDGTIGENITENIKNIKDIPKRLSQAL--DVTIRGEAYMSRQA 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   +ANPRNAA+G LR+L+   +  R L  F++   +     A+ Q  
Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLY--QEVGLEAAESQQR 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+++  LGF VN+    +++   I  +   +++ R  LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 TLERLADLGFSVNSHYLLSSSMTDIWDFIQSIEATREQLPYEIDGVVIKVNQLAIQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    ++ +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++  +R  +  P   P+ CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKRS-NQTPMPIPTACPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS++V   +        A RC   L C +     L+HF SR A  I GLG   ++  + 
Sbjct: 398 CQSQLVHFEDE------VALRCINPL-CPSLIQRSLEHFASRQAMAIAGLGPAVVEKLYS 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L      S   +  + G  + S   L  +I + +  S E+ +F 
Sbjct: 451 ----AGLVHDVADIYRL------SLEDLLTLDGIKEKSAEKLLAAIEQSKANSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ +R + + Y   +         +A          ++  +G +I Q++V+++
Sbjct: 501 LGIRHVGAKASRLILETYGDLETLLSVTAEELA----------QIDGLGLVIGQSLVQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           Q  +    +       V+ +      +  +E+    +V TG L+K+ R +A+E + QLGA
Sbjct: 551 QQDQAAQLLAELKSAGVNLAYLGQRPDRQAELFGFTVVLTGKLEKLNRTQAKEKLEQLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD+++ G   GSKL KAQQLG++I +E+  L L
Sbjct: 611 KVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652


>gi|284166901|ref|YP_003405180.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511]
 gi|284016556|gb|ADB62507.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511]
          Length = 692

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/722 (34%), Positives = 374/722 (51%), Gaps = 52/722 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+  LS ++AR+++  L + I  HD  YY  S P+I D  YDAL  R   +  AF   
Sbjct: 20  FAPVGELSEDEAREQVELLREAIREHDRRYYVESDPVIADRTYDALFARLRDLEDAFG-- 77

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              E P+ P   +GGE       V H  P LS+++     D+R+F  R+ R     +   
Sbjct: 78  --LEHPDSPTRSVGGEPLEEFETVEHVAPMLSIDQSGEEADVREFADRVQR-----EVGD 130

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  EPK DG  +   YE G+   AA RGDG  G+DV+   R I ++P+ L  + PE +
Sbjct: 131 VDYVCEPKFDGVSMEFVYEDGRLERAATRGDGREGDDVTRNARTIGSVPQKLHGDYPEFL 190

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
            VRGEVY+ K+ F A N E I  G +P+ANPRNA +G +R+L+P+ +  R L  F   + 
Sbjct: 191 AVRGEVYMPKDAFQAHNRERIERGEEPFANPRNATAGTIRQLDPSIVADRPLEVFFFDVL 250

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++        L++    G  V + V  A+     ++Y + M   R  L Y+IDG V 
Sbjct: 251 EASDLE-DSHSAELERFPDWGLRVTDHVELADDIDEAIAYRDRMLEARDDLNYEIDGTVI 309

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+   +++LG  AR  R+  ++KF  +   T ++D+ +Q+GRTG LTPVA LEPV++G
Sbjct: 310 KVDDRESREELGRTARHDRYAFAYKFPARAEVTPIVDVAVQVGRTGRLTPVALLEPVDVG 369

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+LHN D I+            +++ VGD V V+RAG+VIP V +++       
Sbjct: 370 GVTVSRASLHNPDEIE-----------EKNVNVGDTVRVQRAGDVIPYVEEVVEK---DS 415

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              +  P  CP+C S V RD             CTGGLAC AQ    ++++   D  ++E
Sbjct: 416 EGHYDLPDRCPVCDSAVERD--------GPMAFCTGGLACDAQLRRSIEYYAGDDGLDLE 467

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +         A  +   AD++ L R   T         G+G+ S  N+   I  
Sbjct: 468 GLGEKSVRQLVD----AGLLESVADLYELDREDLTDLE------GWGETSAENVLAEIEA 517

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R   L  F+ +LGI HVG   AR LA+ + +++ F +          D+   L  VP V
Sbjct: 518 SREPPLAEFLSALGIPHVGPTTARELAREFGTFEAFREA-------AEDEPERLEDVPDV 570

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+ +A+ + EF+ +  N  AV+ LL+ VSP     E     E+E    VFTG+L+ + R 
Sbjct: 571 GETVAEQLHEFFTSEANAAAVDDLLEHVSPQESDLETG-GDELEGLTFVFTGSLEGMTRG 629

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +AQE V   GA  +  +S  TD ++VG+NPG +K + A    V I++E++F  LL  Y  
Sbjct: 630 EAQEAVEAHGANATGSVSGNTDYLVVGENPGQTKRDDAAANDVPIIDEDEFRELLAGYGI 689

Query: 724 TL 725
            L
Sbjct: 690 DL 691


>gi|297623824|ref|YP_003705258.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093]
 gi|297165004|gb|ADI14715.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093]
          Length = 681

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/686 (33%), Positives = 348/686 (50%), Gaps = 55/686 (8%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
             +  YY    P + D+E+D L      +    P+L     P+ P  ++G     S   V
Sbjct: 20  EANYRYYVLQDPELSDAEWDRLFHELKRLEETHPEL---RTPDSPTQRVGAPPQASFAAV 76

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H  P LSL+  +++  L +F  R+ R      D  I +  E KIDG  I + YE G  V
Sbjct: 77  RHPHPMLSLDNAFDLAGLEEFEARLKRVLAT--DEEIAYLAELKIDGLSINLLYEGGVLV 134

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVL------SLNIPEIIEVRGEVYISKNDFLALND 203
           +AA RGDG +GEDV+  +  +P +P+ L         +PE++EVRGE+Y+S+ +F  +N+
Sbjct: 135 WAATRGDGVTGEDVTFNVLGVPGLPQRLPEALPGGGRVPEVLEVRGELYLSRAEFRRINE 194

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
           E  A G  P+ NPRNAASG +R+L+P     R L  F +G+ +   +  + Q E+L  + 
Sbjct: 195 ERAAAGEPPFKNPRNAASGTIRQLDPRVSAGRKLQVFFYGVAEPRALGVRTQSELLDWLA 254

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
             GF  N    +A     +        ++RSTL Y+ DG+V KVDE +L  +LG  AR+P
Sbjct: 255 AAGFRTNPLRARARGIAALEPLIARWTALRSTLDYEADGVVVKVDELALHDELGSTARAP 314

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW +++KF  ++  T LL + + +GRTG +TPVA LEP  I G  ++ ATLHN  +I  L
Sbjct: 315 RWAVAYKFPAEEVETTLLGVSLGVGRTGKITPVAELEPRLIEGTEVSRATLHNPGFIAAL 374

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                      D+RVGDRV+V ++G +IP+V+ ++   R  +  P+ FP  CP C   ++
Sbjct: 375 -----------DLRVGDRVMVHKSGGIIPEVIRVLTEARTAELPPYVFPETCPACGEALI 423

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
                   +  A  RC   LAC AQ L RL H+ SR A +I GL  + L           
Sbjct: 424 --------EDGANVRCVN-LACPAQVLARLSHYASRGAMDIAGLSTKTLQKLLDK----G 470

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            IR   D++ L   Q T         GFG+ S  NL  +I + +   LER + +LG+ HV
Sbjct: 471 LIRTIPDLYDLTPEQLTPLE------GFGERSAQNLVAAIARSKTQPLERLLVALGLPHV 524

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           GA  A+ LA+ + S +         +A            P VG+  A+A+ +  Q P   
Sbjct: 525 GARTAQLLARAFGSLEALQAADTADLAAL----------PEVGETTARAVHDALQQPALR 574

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             +  L            +  S  ++    V TGTL +  R + +E +  LGA V++ +S
Sbjct: 575 ALIGELRARGVGGGAAAPR--SDRLKGLTFVLTGTLSEP-RDRLKERLEALGARVASSVS 631

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKI 708
           +KT  ++ G++PGSKL+KA+ LGV +
Sbjct: 632 KKTSFVVAGEDPGSKLDKARALGVPV 657


>gi|311898479|dbj|BAJ30887.1| putative DNA ligase [Kitasatospora setae KM-6054]
          Length = 788

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/763 (30%), Positives = 351/763 (46%), Gaps = 80/763 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + R   + L  EI  H   YY+   P++ D+E+DAL R  +A+  A P LA    P+ 
Sbjct: 8   PAEVRTRHAELATEIEEHRSRYYEQDAPVVTDAEFDALMRELEALEAAHPALA---TPDS 64

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GG        V H    LSL+   +  +L  +  R+       D +   +  E K
Sbjct: 65  PTRKVGGAPTALFAPVEHRERLLSLDNAMDDAELAAWAERVAAELAGIDYH---YLCELK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  + + YE+G  V AA RGDG  GED++  +R I  +P  L   ++PE++EVRGEVY
Sbjct: 122 VDGLAVNLTYERGVLVRAATRGDGRVGEDITPNVRTIEGVPHRLRGEDLPELVEVRGEVY 181

Query: 193 ISKNDFLALN--------------DEMIAVGRKP------YANPRNAASGILRRLNP-TD 231
               +F ALN              +E    G++P      + NPRNAA+G LR+ +P   
Sbjct: 182 FPTAEFEALNASFEAENARRRQENEERAKEGKRPRALIRLFMNPRNAAAGSLRQKDPLIT 241

Query: 232 ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
             R L   VHG+G  +      Q      +R  G P         T   + ++       
Sbjct: 242 AARPLRLVVHGIGARTGFDIDNQSHAYDLLRGWGLPTARHNAVVGTLDEVRAFIARFGER 301

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R ++ ++IDG+V KVDE +LQ +LG  ++SPRW I+ K+  ++ + RL DI I IGRTG 
Sbjct: 302 RHSVEHEIDGVVVKVDEIALQGRLGATSKSPRWAIAWKYPPEEVTGRLTDIRIGIGRTGR 361

Query: 352 LTPVARLE-PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            TP A LE PV + G+++  ATLHN+  +K            + + +GD V++++AG+VI
Sbjct: 362 ATPYAVLEKPVKVAGSMVQYATLHNQQVVKA-----------KGVLLGDTVVLRKAGDVI 410

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P++V  + + R    + F  P+ CP C S +         +     RC     C AQ  E
Sbjct: 411 PEIVGPVHDLRDGGEREFVMPADCPECGSGL-----RPMSEGDIDLRCPNTRYCPAQIRE 465

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS-IRIPADIFTLQRRQQ----------- 518
           R+     R+  ++EG G        +  +P    +R   DIF L   +            
Sbjct: 466 RVAFLAGRNCLDVEGFGYVAATALTQPLEPTEPPVRDEGDIFGLTEERLLPIRVLVRDPR 525

Query: 519 TSTTKIENILGFGD-------------VSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
           TS  K+++  G                   T L D++   R   L RF+  L IRHVG  
Sbjct: 526 TSMPKLDDETGEQKEVFFFANNAGTARKDTTALLDNLRAARTSPLWRFLNGLSIRHVGPV 585

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A++LA+ +                   D   L  V  +G  IA+A+ E+Y    +   +
Sbjct: 586 AAQALAREFRDLDRVFAA----------DETELTAVEGIGPTIARAVKEWYAEDWHREIL 635

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           E             E+     +E   +V TGTL    R  A+E +   GA V+  +S+KT
Sbjct: 636 EKWRAAGVVFTEEAEELGERPLEGLTVVVTGTLAGHTRDGAKEALASRGAKVTGSVSKKT 695

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728
             ++ GDNPGSK +KA QLG+ ++++  F  LL++     R H
Sbjct: 696 HFVVAGDNPGSKYDKAVQLGLPVLDDAGFAVLLERGADAARAH 738


>gi|3800758|gb|AAC68862.1| thermostable DNA ligase [Thermus filiformis]
          Length = 667

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/719 (32%), Positives = 378/719 (52%), Gaps = 59/719 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+AR+ ++ L   I YH+  YY  + P I D+EYD L R    +   FP+    + P
Sbjct: 1   MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEF---KSP 57

Query: 72  NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G      +   V H     SL+  +  E++  F  R     ++  +    +T+
Sbjct: 58  DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEER----LERLAEAPSLYTV 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G +   +  GDG  GE+V+  +  IPTIPR L   +P+ +EVRGE
Sbjct: 114 EHKVDGLSV-LYYEEGVWSTGS--GDGEVGEEVTQNLLTIPTIPRRLK-GVPDRLEVRGE 169

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--- 246
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P     R L    + LG     
Sbjct: 170 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGL 229

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E   K QYE+L  ++  GFPV +   +A    G+   Y    + R  LP++ DG+V K+
Sbjct: 230 EESGLKSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKL 289

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +L  +LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV I G+
Sbjct: 290 DDLTLWGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGS 349

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R    +
Sbjct: 350 EVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGKER 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +IEGL
Sbjct: 399 PIRWPEACPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIEGL 449

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++   +       +R  AD++ L++       ++      G+ S  NL   I + +
Sbjct: 450 GEKLIERLLEK----GLVRDVADLYHLRKEDLLGLERM------GEKSAQNLLRQIEESK 499

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  LER +++LG+  VG  +AR+LA+ + +     +     +    +             
Sbjct: 500 HRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGE---------- 549

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           + A+AI+E  ++P     V  L +       + E  VS  +     V TG L +  R + 
Sbjct: 550 LTARAILETLKDPAFRDLVRRLKEAGVSMESKEE--VSDLLSGLTFVLTGELSRP-REEV 606

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV ++ EE+F   L++    +
Sbjct: 607 KALLQRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGAPV 665


>gi|312131728|ref|YP_003999068.1| DNA ligase, nad-dependent [Leadbetterella byssophila DSM 17132]
 gi|311908274|gb|ADQ18715.1| DNA ligase, NAD-dependent [Leadbetterella byssophila DSM 17132]
          Length = 680

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/718 (30%), Positives = 360/718 (50%), Gaps = 55/718 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +  + +L  +I++++D YY  +   I D E+D L +  + +  A P+      P+ P 
Sbjct: 2   DIKTRIQTLTDQINHYNDRYYLDAVSEISDFEFDTLLKELEELEKAHPEF---RQPDSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +   V H  P LSL   ++ E++R +  R+ +     +     +  E K D
Sbjct: 59  QRVGGSITRNFETVRHQFPMLSLSNTYSEEEIRDWDARVKKGL---EGEPYEYICELKFD 115

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVY 192
           G  ++IRYE G       RGDG  G+D++A ++ I ++P  +      + E  EVRGE +
Sbjct: 116 GISLSIRYENGILTKGITRGDGVQGDDITANVKTIRSLPLNVRKFEEVLGENFEVRGEGF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +    F ALN E    G    ANPRNAA+G  +  + + +  R L+ FV+      E F 
Sbjct: 176 MPTKVFEALNKEKEIRGEALLANPRNAAAGTFKLQDSSVVASRKLDCFVYQFISGEERF- 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E    ++  GF V+N  ++ +   G++S+ +E    R TL    DG+V KV+ ++ 
Sbjct: 235 TTHEESFLALQSAGFKVSNSWKKVSNIEGVMSFIHEWDEKRHTLECATDGIVIKVNSYAQ 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A+SPRW I++K+  +  ST LLD+  Q+GRTG +TPVA L PVN+    +  A
Sbjct: 295 REKLGFTAKSPRWAIAYKYKAESKSTTLLDVTFQVGRTGTVTPVAELRPVNLSMTTVKRA 354

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + +GD V V++AGE+IPKV  + V        P  FP
Sbjct: 355 TLHNADEIERL-----------GLAIGDEVFVEKAGEIIPKVTGVAVQ--SLARIPIVFP 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + ++R+         AA  C     C  Q    ++HF+ R A +IE LG+ ++
Sbjct: 402 TACPSCGTSLLRNEGE------AAWYCPNSEGCLPQIKGSIEHFIQRKALDIESLGEGKI 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK--------IENILGFGDVSVTNLYDSIN 543
           D   ++      IR  AD++ L+        K            + F + +V N+ + I 
Sbjct: 456 DILLEN----GLIRDAADLYQLKYEDLIGLEKVHVDEETGKSKKISFKEKTVKNILEGIA 511

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +   L + +F +GIR VG   A+ LA ++ S Q             N ++  L+ VP 
Sbjct: 512 KSKEEPLAKLLFGIGIRFVGETTAQKLAAHFKSMQGLM----------NANYEELLAVPD 561

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKI 661
           VG+ +AQ+I +++Q+      +  L          HE+ V   + +E   L++TGT +  
Sbjct: 562 VGEKVAQSIRDYFQSESKQHFIAKLQVAGLQMEAVHEEVVTEGNALEGLSLLYTGTFENF 621

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            R + +  +   G  + + +S+K   +IVG+  G SKL+KA++LG+ I+NEEQFL  L
Sbjct: 622 SREELERKIEANGGKLVSGVSKKLSYLIVGEGAGPSKLKKAEELGIPILNEEQFLAKL 679


>gi|212703192|ref|ZP_03311320.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098]
 gi|212673458|gb|EEB33941.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098]
          Length = 729

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/732 (33%), Positives = 386/732 (52%), Gaps = 60/732 (8%)

Query: 8   PIEALSI-----EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           P + LS+     ++ ++ ++ L   + +H+  Y+   KP+I D +YDAL R   A+   +
Sbjct: 43  PADPLSLPEPPRDRPQERMAWLTTILEHHNYLYHTLDKPVISDDQYDALFRELKALEEDY 102

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P       P+ P  ++GG +   L K  H      L+ +++ E+ ++F+ R+ R   +  
Sbjct: 103 PQW---RSPHSPTLRVGGGLLGGLPKQRHRQRMYGLDNVFSAEEWQEFVARMQRALPE-- 157

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--N 180
              + F  +PK+DG  + I YE G    A  RGDG  GE V+  +R I T+P  L     
Sbjct: 158 -APLAFWCDPKLDGLALEIIYEDGVLQQALTRGDGEEGEVVTEAVRTIRTVPLRLRGTGP 216

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFF 239
            PE +EVRGEV I K DF A+N+   ++G+K  ANPRNAA+G LR+L+  +  +  L F 
Sbjct: 217 FPERLEVRGEVVIYKKDFAAINERRESLGQKLLANPRNAAAGALRQLDVANTQQMPLRFL 276

Query: 240 VHGLGKTSEIFAKG---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
            + LG+     A+    Q+E+  ++R  GF      +       + +Y   ++  R+  P
Sbjct: 277 AYSLGEARWGQAEPCHFQHELAARLRDYGFLTPPDGKLCADPAAVEAYVESVRQGRADFP 336

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
            +IDG V K D+   Q+ LG  AR+PR+ I+ KF   Q  TRL  I+IQ+GRTG+LTPVA
Sbjct: 337 MEIDGAVAKQDDLEAQEALGFTARAPRFAIAFKFPAMQVHTRLTGIEIQVGRTGVLTPVA 396

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           +LEPV +GG ++T ATLHNED I             +D+RVGD V+V+RAG+VIP+VV  
Sbjct: 397 QLEPVAVGGVMVTRATLHNEDEI-----------LAKDVRVGDTVIVQRAGDVIPEVVGP 445

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           ++ ER   A+PF FP  CP+C     R+         AA RC G ++C A +L  + HFV
Sbjct: 446 VLEERPSGARPFEFPHICPVCGEPAHREPGE------AAWRC-GNISCPAVRLRSICHFV 498

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           S+   +++G+G++ ++    S      +  P  +F L  +      ++ ++L        
Sbjct: 499 SKAGLDVQGVGQKWIEQLVSSGH----VTSPKQLFRLTVQDLLPFDRMGDVL------AR 548

Query: 537 NLYDSINKRRNI-SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            + D+ +  R+  +L R I +LGIRHVG + AR LA ++      A            D 
Sbjct: 549 KIVDAFDDARHNATLARLISALGIRHVGEQTARMLAAHFYDMDALAAA----------DT 598

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSSEIENKKL 652
             L+ +P VG  +A +I  F+++P N      +         +    E      ++ K +
Sbjct: 599 QRLLELPDVGPEVASSIRSFFESPANQHMLAGLREAGLWPVAAAEPAEAAGEGPLQGKNI 658

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           +FTGTL  + R KA++     GAVV   +S+K DI++VG+NPGSKLEKAQ LG+ +++E 
Sbjct: 659 LFTGTLS-MARGKAKQLAEAAGAVVLGSVSKKLDILVVGENPGSKLEKAQSLGITVLDEA 717

Query: 713 QFLFLLQQYNTT 724
            FL LL      
Sbjct: 718 AFLDLLADRTDA 729


>gi|308233598|ref|ZP_07664335.1| DNA ligase, NAD-dependent [Atopobium vaginae DSM 15829]
 gi|328944216|ref|ZP_08241680.1| DNA ligase [Atopobium vaginae DSM 15829]
 gi|327491135|gb|EGF22910.1| DNA ligase [Atopobium vaginae DSM 15829]
          Length = 792

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/741 (31%), Positives = 366/741 (49%), Gaps = 66/741 (8%)

Query: 7   IPIEA-LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +P++   S+ +A   +  L + + YH   YY    P+I D+++D+  +    +   +P L
Sbjct: 74  VPVDTHASLPEA--RVRELRKLLEYHAYRYYALDAPLITDNQFDSYLQELLHLEKTYPYL 131

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              +D +   ++IGG ++    +V H+    S++   N+E+L  ++ +          N 
Sbjct: 132 ---DDEHSYTHRIGGYVSQQFRRVAHAQRMYSMDDAMNLEELDAWLEKTDEALGSSPSNP 188

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-------- 177
           + +T E KIDG  + + Y  G+ + AA RGDG  GEDV+A +  I  +P  L        
Sbjct: 189 VAYTCELKIDGLGVALTYHNGQLLRAATRGDGSVGEDVTANVITIKDVPHTLLRDGLQKI 248

Query: 178 -SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
            +      IEVRGEVY+ K+ F+ LN+     GR  +ANPRNAA+G LR+ N      R 
Sbjct: 249 ANTGFGSDIEVRGEVYMPKHSFVRLNETADDEGRPTFANPRNAAAGSLRQKNARITAHRD 308

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L  F++ L     +    Q + L  +   GF VN   ++      +  Y       RS+L
Sbjct: 309 LETFIYALASRESLDVHTQTDFLAWLSSCGFSVNPHAQRCVCAQEVHDYCARALKNRSSL 368

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            YDIDG+V KVD F+ Q QLG  AR+PRW I+ KF  +Q  T L +I IQ+GRTG+LTPV
Sbjct: 369 DYDIDGVVVKVDSFAFQDQLGFTARAPRWAIAFKFPPEQKQTILREIRIQVGRTGVLTPV 428

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A  +PV + G+ I  ATLHN D ++            RD+RVGD ++V +AG+VIP+VV 
Sbjct: 429 AEFDPVLVAGSTIARATLHNIDEVRR-----------RDVRVGDTIVVHKAGDVIPEVVG 477

Query: 416 IIVN----ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
            ++       H     +  P  CP C + VVR+ +        A+RC   L C AQ  +R
Sbjct: 478 PVLEGDLAALHFARPVWDMPQTCPACGASVVREDDE------VAYRCV-SLDCPAQASQR 530

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT-LQRRQQTSTT-------- 522
           L H+ SR A +I+GLG + +    +       ++  AD +  L     +S          
Sbjct: 531 LIHWCSRKAMDIDGLGSELITRLTEQ----GYVKDVADYYDKLSLENLSSLDTGRTYDTT 586

Query: 523 ----KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
               K  + +  G    + +   +NK +   L R +F LGIRHVGA +A  +   Y   +
Sbjct: 587 NKLHKQGDAIRVGKKIASKIIAQLNKSKQAGLARVLFGLGIRHVGASVAELIVATYPDLE 646

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIG 637
           +  +   + IA           +  VG  IA ++V+F   P+N+  +  L    V  S  
Sbjct: 647 SLLRADKDEIAA----------IDGVGPKIAASLVDFLHMPQNMEVLIRLQAAGVVLSAP 696

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
             +  +   +     V TGTL+ + R  A + +  LGA VS  +SRKT  +I G+  GSK
Sbjct: 697 EQKALLPQSLTGYTFVLTGTLEDLSRTAAGDALKALGAKVSGSVSRKTSFVIAGEQAGSK 756

Query: 698 LEKAQQLGVKIMNEEQFLFLL 718
           L+KA++LGV ++  ++   +L
Sbjct: 757 LDKARELGVCVIGRKELDEIL 777


>gi|290580089|ref|YP_003484481.1| DNA ligase [Streptococcus mutans NN2025]
 gi|254996988|dbj|BAH87589.1| DNA ligase [Streptococcus mutans NN2025]
          Length = 652

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/702 (31%), Positives = 353/702 (50%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L Q ++ +   YY    P + D+EYD L R    +   FP+   S   N P ++
Sbjct: 2   KERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDILS---NSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K  H  P  SL+  ++ E+L  F  RI   + + D     +  E KIDG 
Sbjct: 59  VGDLVLDGFEKYRHEYPLFSLQDAFSREELNAFDRRIKAEFPQAD-----YLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G+    A RGDG  GE+++  ++ +  IP  L  NI   + VRGE Y+ K  
Sbjct: 114 SISLTYVNGRLRVGATRGDGTVGENITENLKRVRDIPLHLPENI--DLTVRGECYLPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E    G   +ANPRNAA+G LR+L+   +  R L  F++   +     A  Q  
Sbjct: 172 FKTINAERRENGETEFANPRNAAAGTLRQLDTKVVAKRKLATFIY--QEAGPTAASSQEA 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+    LGF VN     +++   I  +  ++   R+ L YDIDG+V KV+  +LQ+ LG
Sbjct: 230 VLESFAKLGFTVNPRHIISSSMDAIWQFIEDVAKERAELAYDIDGVVIKVNSLALQEALG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++ +  +L +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKTAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++ N+R     P   P+ CP 
Sbjct: 350 DYI-----------AEKDIRIGDIVVVYKAGDIIPAVLHVVENKRDQQV-PLPIPTVCPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++   +        A RC     C AQ  E L HF SRDA NI GLG   ++  F 
Sbjct: 398 CQSELIHFEDE------VALRCVNPR-CPAQLKEELIHFASRDAMNIIGLGPAIVEKLFT 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +E     I   ADI+ L             + G  + S T LY +I   +  S E+ +F 
Sbjct: 451 AE----LICDVADIYQLTPENLM------QLEGIKEKSATKLYKAIQASKANSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ +R L + + S +  A    + IA  +           +G +IA+++  ++
Sbjct: 501 LGIRHVGSKASRLLMERFESLEQLAAADFDDIAAID----------GLGIVIAESLKTYF 550

Query: 617 QNPRNIC-AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                    +E     ++ +    +    + +    +V TG L  + R +A+E +  LGA
Sbjct: 551 ATAGAQKLLIELKTAGLNLTYLGKKTASDAALTGMTIVLTGKLANLTRSQAKEKLQSLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V   +S+KT ++I G + GSKLEKA+ LG++I +E     L
Sbjct: 611 NVVGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDEAWLESL 652


>gi|71898271|ref|ZP_00680445.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
 gi|71732010|gb|EAO34067.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
          Length = 831

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/860 (30%), Positives = 417/860 (48%), Gaps = 172/860 (20%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP++        +  + L + +   +  Y+   +P I D++YD + R  DA+   +PDL
Sbjct: 1   MIPLDP------AQRAAELRRRLQEANYHYHVLDQPRIPDADYDRMLRELDALEATYPDL 54

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +     
Sbjct: 55  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITAHLGETAPG- 110

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP+ L  +  P +
Sbjct: 111 --FSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 168

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+P     R L+F+ +G+
Sbjct: 169 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 228

Query: 244 GK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ T ++      E+L  +R  GFPV+  V       G+++YY  M++IR TLP+DIDG+
Sbjct: 229 GEVTDDVSFHRHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 288

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q ++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 289 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 348

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 349 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 397

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P    +S P  CP+C S +VR+         A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 398 PGVTAWSMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMD 451

Query: 483 IEGLGKQQLDFFFKS--------------------------EDPAFSIRIPADIFTLQRR 516
           +EGLG + ++    +                          + P   +R   D  T  R 
Sbjct: 452 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 511

Query: 517 QQTS---TTKIENILGFGD--------------------------VSVTNLYDSINKRRN 547
           QQ      T   ++ G GD                              NL  +I+  R 
Sbjct: 512 QQLEEILLTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDHSRQ 571

Query: 548 ISLERFIFSLGIRHVGA--------------------------------EIARSLAKYYL 575
            +LERF+F+LG+ HVG                                 E+AR++  +++
Sbjct: 572 TTLERFLFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKCVPDIGGEVARAIG-HFM 630

Query: 576 SYQNFAQEINNIIAH------------------NNDDWLSLIRVPLVGDI---------- 607
                 Q I++++                         L  + +P +  +          
Sbjct: 631 DQPANQQAIDDLVERGVRITDAHPPTSTLRDQLTLASLLEHLEIPKITPLRAVQLATLAP 690

Query: 608 ---------------------IAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNV 643
                                 AQ++ E++Q+P NI     L          +   ++  
Sbjct: 691 TLPLLAETDLDALLQAGVPQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQLPSPDRAH 750

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           ++ +  + +V TG L  + R  A   +  LGA +   +S+KT  ++ G++PGSKL+KA  
Sbjct: 751 TAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHA 810

Query: 704 LGVKIMNEEQFLFLLQQYNT 723
           L V I +E + L  L+QY+ 
Sbjct: 811 LHVDIWDEARLLAFLEQYSA 830


>gi|82523684|emb|CAI78466.1| NAD-dependent DNA ligase [uncultured candidate division WS3
           bacterium]
          Length = 667

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/704 (32%), Positives = 356/704 (50%), Gaps = 46/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR  ++ L + I +HD  YY  + P I D EYDAL     A+    P+L  +   + P  
Sbjct: 7   ARARVAELRELIRHHDRKYYVDAAPEIADGEYDALMSELAALEREHPELVTA---DSPTR 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++ G  +     V H++P LSLE  ++ E+L  F  R+ +         + + +EPK+DG
Sbjct: 64  RVAGAPSDGFSTVEHAVPMLSLENTYSPEELVAFDARVRKGLP---GEPVEYVVEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             I++RY +G    A  RGDG  G+DV+A +R I +IP  LS    P  +EVRGEV++ +
Sbjct: 121 VSISLRYVEGSLDVAVTRGDGERGDDVTANVRTIRSIPSALSGRRAPATVEVRGEVFMPR 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
           + F  LN   I     P+ NPRNAA+G L+  +P++   R L    + +   +      Q
Sbjct: 181 SGFEELNGRRIEAEEAPFVNPRNAAAGSLKLRDPSEAAKRPLTAIFYQVAGPAAARIATQ 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E ++ M   GFPV+  V  A      V         R  L YDIDG V KV+    Q +
Sbjct: 241 WEAIELMGDWGFPVSPDVALARDVDAAVEACLAWDERRGGLDYDIDGTVVKVNSLEQQAR 300

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF      T +L I++Q+GRTG LTPVA LEPV + G+ ++ ATLH
Sbjct: 301 LGSTAKSPRWGIAYKFPAVSVRTVVLGIEVQVGRTGKLTPVAVLEPVFVSGSTVSRATLH 360

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D I+ L           D+RVGD V +++ GEVIPKV  ++ + R    + F  P+ C
Sbjct: 361 NQDEIERL-----------DVRVGDTVEIEKGGEVIPKVARVVRSMRKGRPRRFRMPATC 409

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C   VVR             RC G  +C  Q   R++HF SR A +I GLG   +   
Sbjct: 410 PACGEPVVRPEGE------VDARC-GNESCPGQAAGRIQHFASRGAMDIRGLGSALVATL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    +    D++ L      +  ++      G+ S  NL   + + ++    R +
Sbjct: 463 VAE----GLVSDYGDLYGLDAESLAALDRM------GERSAENLLAELEESKDRPFARVL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGIRHVGA  A+ LA  +   +  A      +A   +          +G +IA +I  
Sbjct: 513 HGLGIRHVGARAAQVLAARFTGMKELAAASEEELAETEE----------IGPVIAASIRS 562

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F ++PRN  A+  L        G      ++ +    +V TG+L+++ R +A E V + G
Sbjct: 563 FLESPRNKEALRKLETAGVNMRGGSTPGRATALAGLTVVLTGSLERMTREQAAEAVAEAG 622

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             VS+ +S KTD+++VG +PGSKL+KA +LG++ ++E +   +L
Sbjct: 623 GRVSSSVSSKTDLVVVGADPGSKLKKALELGIRTIDESELERML 666


>gi|28199807|ref|NP_780121.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa Temecula1]
 gi|182682559|ref|YP_001830719.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M23]
 gi|81438262|sp|Q87A88|DNLJ_XYLFT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254782314|sp|B2I9S4|DNLJ_XYLF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28057928|gb|AAO29770.1| DNA ligase [Xylella fastidiosa Temecula1]
 gi|182632669|gb|ACB93445.1| DNA ligase, NAD-dependent [Xylella fastidiosa M23]
 gi|307578838|gb|ADN62807.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 831

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/860 (30%), Positives = 415/860 (48%), Gaps = 172/860 (20%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP++        +  + L + +   +  Y+   +P I D++YD + R  DA+   +PDL
Sbjct: 1   MIPLDP------AQRAAELRRRLQEANYHYHVLDQPRIPDADYDRMLRELDALEATYPDL 54

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +     
Sbjct: 55  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITARLGETAPG- 110

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP+ L  +  P +
Sbjct: 111 --FSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 168

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+P     R L+F+ +G+
Sbjct: 169 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 228

Query: 244 GK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ T ++      E+L  +R  GFPV+  V       G+++YY  M++IR TLP+DIDG+
Sbjct: 229 GEVTDDVAFHRHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 288

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q ++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 289 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 348

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ TLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 349 VAGVTVTSVTLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 397

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P A  +S P  CP+C S +VR+         A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 398 PGATAWSMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMD 451

Query: 483 IEGLGKQQLDFFFKS--------------------------EDPAFSIRIPADIFTLQRR 516
           +EGLG + ++    +                          + P   +R   D  T  R 
Sbjct: 452 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 511

Query: 517 QQTST-------------------------TKIENILGFGDV----SVTNLYDSINKRRN 547
           QQ                             +  +              NL  +I++ R 
Sbjct: 512 QQLEEILRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQ 571

Query: 548 ISLERFIFSLGIRHV--------------------------------GAEIARSLAKYYL 575
            +LERF+F+LG+ HV                                G E+AR++  +++
Sbjct: 572 TTLERFLFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKCVPDIGGEVARAIG-HFM 630

Query: 576 SYQNFAQEINNIIAH------------------NNDDWLSLIRVPLVGDI---------- 607
                 Q I++++                         L  + +P +  +          
Sbjct: 631 DQPANQQAIDDLVERGVRITDAHPPTSTLRDQLTLASLLEHLEIPKITPLRAVQLATLAP 690

Query: 608 ---------------------IAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNV 643
                                 AQ++ E++Q+P NI     L       + +    ++  
Sbjct: 691 TLPLLAEADLDALLQAGVPQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQLLSPDRAH 750

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           ++ +  + +V TG L  + R  A   +  LGA +   +S+KT  ++ G++PGSKL+KA  
Sbjct: 751 TAPLNGQSVVLTGKLASLTREAAATRLESLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHA 810

Query: 704 LGVKIMNEEQFLFLLQQYNT 723
           L V I +E + L  L+QY+ 
Sbjct: 811 LHVDIWDEARLLAFLEQYSA 830


>gi|225870290|ref|YP_002746237.1| DNA ligase [Streptococcus equi subsp. equi 4047]
 gi|254781420|sp|C0M6L2|DNLJ_STRE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225699694|emb|CAW93413.1| DNA ligase [Streptococcus equi subsp. equi 4047]
          Length = 652

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/702 (31%), Positives = 359/702 (51%), Gaps = 53/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DSEYD L R    +   +P        + P   
Sbjct: 2   KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILK---DSPTQL 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K  H  P  SL+  ++ E+L  F  RI     K       +  E KIDG 
Sbjct: 59  VGSTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRI-----KSAFPEAEYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG  GE+++  I+ I  IP+ LS  +   + +RGE Y+S+  
Sbjct: 114 SISLVYEAGVLKVGATRGDGTIGENITENIKNIKDIPKRLSQAL--DVTIRGEAYMSRQA 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   +ANPRNAA+G LR+L+   +  R L  F++   +     A  Q +
Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLY--QEVGLETADSQQK 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+++  LGF VN+    +++ + I  +   +++ R  LPY+IDG+V KV++ ++Q++LG
Sbjct: 230 TLERLADLGFSVNSHYLLSSSMNDIWDFIQSIEASREELPYEIDGVVVKVNQLAIQEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++    ++ +D  +GRTG++TP A L PV + G  ++ ATLHN 
Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIR+GD V+V +AG++IP V+ ++  +R   A P   P+ CP 
Sbjct: 350 DYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKRRDQA-PMPIPTACPS 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS++V   +        A RC   L C +     L+HF SR A NI GLG   ++  + 
Sbjct: 398 CQSQLVHFEDE------VALRCINPL-CPSLVQRSLEHFASRQAMNIAGLGPAVVEKLYS 450

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L      S   +  + G  + S   L  +I + +  S E+ +F 
Sbjct: 451 ----AGLVHDVADIYRL------SLEDLLTLDGIKEKSAEKLLAAIEQSKANSAEKLLFG 500

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+GA+ +R + + Y   +         +A          ++  +G +I Q++V+++
Sbjct: 501 LGIRHIGAKASRLILEAYGDLEALLAVTAEELA----------QIDGLGLVIGQSLVQYF 550

Query: 617 QNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           Q  +    +       V+ +      +  + +    +V TG L+K+ R +A E + QLGA
Sbjct: 551 QQEQAAQLLAELKSAGVNLAYLGQRPDQQAALFGLTVVLTGKLEKLNRTQAMEKLEQLGA 610

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  +S+KTD+++ G   GSKL KAQQLG++I +E+  L L
Sbjct: 611 KVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652


>gi|58426627|gb|AAW75664.1| DNA ligase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 961

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/862 (29%), Positives = 407/862 (47%), Gaps = 175/862 (20%)

Query: 13  SIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++EQ   +    L + I   D  YY  + P I D++YD L R    +   +P+L  +   
Sbjct: 120 TMEQGVIERARELRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTA--- 176

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  S  KV HSIP LSL   ++  +++ F+ RI+R       N + F++E
Sbjct: 177 DSPSMRVGGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFRRMGSS--NPLEFSVE 234

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK DG  I++RYE GKFV    RGDG  GEDVS  IR I ++P  L  N +P I+EVRGE
Sbjct: 235 PKFDGLAISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGE 294

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG----- 244
           VY+ ++ F   N   +A G K  ANPRN A+G LR+L+      R L+FF +G+G     
Sbjct: 295 VYMPRDGFSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVE 354

Query: 245 -----KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
                +  +  A     ML ++R  GFPV++ V       G+++YY  +   R  LP+DI
Sbjct: 355 QDLFEEIPQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDI 414

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYK+D+ + Q+++G  +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+
Sbjct: 415 DGVVYKLDDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLK 474

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV++ G ++TNATLHN D I  L           D+RVGD V+V+RAG+VIP+V  ++ +
Sbjct: 475 PVHVAGVIVTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVAD 523

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R P  Q +  P+ CP+C S +VR+         A  RC+G L C AQ+ E  +HFVSR 
Sbjct: 524 QRPPATQSWQMPTQCPVCGSEIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRR 577

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIP------------------ADIFTLQRRQQTST 521
           A +++GLG++ ++    S        +                      F  + R+  ++
Sbjct: 578 AMDVDGLGEKFIEVLVDSGVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLAS 637

Query: 522 TKIENILG-------------------------------------FGDVSVTNLYDSINK 544
                +                                              NL ++I  
Sbjct: 638 GAYAQLEATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIET 697

Query: 545 RRNISLERFIFSLGIRHV--------------------------------GAEIARSLAK 572
            R+ +LERF+F+LGI HV                                G E+ARSL  
Sbjct: 698 SRDTTLERFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLG- 756

Query: 573 YYLSYQNFAQEINNIIAHNN------------------DDWLSLIRVPLVGDI------- 607
           ++       + I++++A                      + L  + +P V  I       
Sbjct: 757 HFFDQPGNQKAIDHLLARKVRIGDTHPPSPKLRGELRLANLLEDLEIPKVTPIRAAQIAT 816

Query: 608 ------------------------IAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHE 640
                                   +A+++  +   P N       +  L  +   +    
Sbjct: 817 AFGSIDALRNGGPEPLVEAGVPQSVAESLATWLLVPANDTLAVKAQKKLSALLAMMPEAG 876

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
           +  +  ++ + +V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+K
Sbjct: 877 EEKTGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDK 936

Query: 701 AQQLGVKIMNEEQFLFLLQQYN 722
           AQ LGV+I +E + L  L ++ 
Sbjct: 937 AQSLGVEIWDEARLLAFLGEHG 958


>gi|330984116|gb|EGH82219.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 675

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/707 (32%), Positives = 362/707 (51%), Gaps = 46/707 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
             + L   I + +  Y+   +P I D+EY+AL +   AI  A P     + P+ P  KIG
Sbjct: 6   RAAELRHLIDHANYRYHVLDEPTITDNEYNALFQELLAIEAADP---TQQTPDSPTQKIG 62

Query: 80  GEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +    L  V H++  LSL+  +   D +KF+  I     +   + + +  EPK DG  
Sbjct: 63  GYVAVGGLQPVKHAVRMLSLDNAFEDADFQKFVKAIEA---EMGIDQLEYVCEPKYDGLA 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ Y  G     A RGDG +GEDV+  +R +  IP  L  + P  +EVRGEVY+ ++ F
Sbjct: 120 VSLIYIDGVLTRGATRGDGETGEDVTHTVRTVKNIPLKLRGDFPAYVEVRGEVYMPRDGF 179

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
            ALN   I  G K YANPRNAA+G LR+L+ T   +R L F  + L     I  K   E 
Sbjct: 180 EALNQRQIEQGLKTYANPRNAAAGSLRQLDSTVSASRPLEFCAYSLVGAEGIRPKTHIEA 239

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +Q ++  G P+  G+     F  +   + E+   R TL YDIDG+V+K+++  LQ++LG 
Sbjct: 240 MQIIQGWGVPITPGLEVIKGFEAVKLAWEELLKRRPTLNYDIDGIVFKLNDIELQEELGF 299

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             R PRW I+ KF  ++  T L+ +D+QIGRTG  TPVAR++PV +GG +++N TLHN D
Sbjct: 300 VGRVPRWAIAWKFPAEEVDTVLIQVDVQIGRTGAATPVARVKPVQVGGVVVSNVTLHNWD 359

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            +K L           D+  GD V+++RAG+VIP+++  + ++R P A+P + P+ CP C
Sbjct: 360 EVKRL-----------DLHEGDTVIIRRAGDVIPQMMMSVADKRIPGAKPIAAPTHCPRC 408

Query: 438 QSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            S       +V+         +A  RC GG+AC AQ+ E + + VSR+  +I+GLGK  +
Sbjct: 409 NSEILNDTDLVKKKGVYVEVTLAYRRCQGGIACDAQREEMIINAVSREVLDIDGLGKTTV 468

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       ++  +D+F L             + G  + SV  L  SI K +   L 
Sbjct: 469 KTL----CDLGILKDLSDVFALTYDDLI------KVEGMAEASVNKLLASIEKSKQTELP 518

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+ SLGIR  G    + LAK +LS+              N  +  L+ +   G   A  
Sbjct: 519 RFLRSLGIREAGETTGKVLAKTFLSFDQI----------VNKSFDDLVALEDFGPKKAGY 568

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +V+ +     +  +   +  +  +I   E+  +S +  +  V TGTL  + R +A+  + 
Sbjct: 569 LVKAFAPGSPVLEMAQRMLALGVTIAPVEQQDTS-LAGRTYVLTGTLSHMSRGEAKARLE 627

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             GA  S  + +KT  +I G + G KL +A  LG+ ++ EE  + L+
Sbjct: 628 AKGAKTSGSVGKKTTALIAGADGGGKLTEAANLGIPVLYEEDLMKLI 674


>gi|153956079|ref|YP_001396844.1| LigA1 [Clostridium kluyveri DSM 555]
 gi|219856414|ref|YP_002473536.1| hypothetical protein CKR_3071 [Clostridium kluyveri NBRC 12016]
 gi|190359246|sp|A5N2X7|DNLJ_CLOK5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781297|sp|B9DWM9|DNLJ_CLOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146348937|gb|EDK35473.1| LigA1 [Clostridium kluyveri DSM 555]
 gi|219570138|dbj|BAH08122.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 663

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/706 (30%), Positives = 362/706 (51%), Gaps = 46/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L + I YH+D YY    P I D EYD L      + ++ P+       + P 
Sbjct: 2   DIKKRIDELRKIIEYHNDKYYNQDDPEITDYEYDKLYVELRNLENSHPEYKIQ---SSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+GG +   L KV H IP +SL+ +++ E++  F+ +I       +     F +E KID
Sbjct: 59  QKVGGTVKRELRKVKHDIPVVSLQDVFSKEEVYSFVEKI-----TSEVTYPKFVVEKKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + +RY  G+   A  RGDG  GE V   I  + +IP+ +   +   +E+RGE+Y++ 
Sbjct: 114 GLTVVLRYYNGELKEAITRGDGSIGESVFENILQVKSIPKHIPSKL-NYLEIRGEIYMTN 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            +F+ +N++   +G K + NPRN A+G +R+L+ + +  R L+ F+  L  +     +  
Sbjct: 173 ENFIKVNEKQEEIGGKIFKNPRNLAAGTIRQLDTSIVKDRNLDIFIFNLEISEGKKFETH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ +   GF V+   +   T   + +   +++  R  L Y IDG V KVD  + +  
Sbjct: 233 SETLEWLSNQGFDVSPNFKICETADEVWNAILDIEESRWDLGYSIDGAVVKVDNLNDRIS 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++ P+W ++ K+  +Q  T + DI +Q+ RTG L P+A L PV +    I+ ATLH
Sbjct: 293 LGMTSKVPKWTVAFKYPPEQKETVIEDIIVQVSRTGRLNPLALLRPVILANTTISKATLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D+I             +DIR+GD V++++AG++IP+++  I  +R   A+ +  P  C
Sbjct: 353 NQDFIDS-----------KDIRIGDTVIIQKAGDIIPEIIRSIPEKRPDWAKKYIIPDVC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S+ +R+ +          RC+    C AQ   ++ +FVS+DA NI G G+  ++  
Sbjct: 402 PVCNSKTIREPD------GVDTRCSNP-DCEAQSFRKIGYFVSKDAMNIVGFGQNTVEAL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            K       I+  +DI+ L+  +     K   I+G  + SV NL ++I   ++  ++R I
Sbjct: 455 MKD----GYIKKISDIYILKNYKDALIEK--GIIG-KEKSVNNLLNAIELSKDNDIDRLI 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGIR+VG + A+ LA  + S    A             +  LI +   G      I+E
Sbjct: 508 TGLGIRNVGKQSAKILAGNFKSMDELA----------GAAYEQLIELEDFGPTTVPDILE 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+ +   I  ++ L +    +I +  +K + +    K  V TGTL  ++R +A E +   
Sbjct: 558 FFNSNAYIELIKKLKEAGVNTISKTLQKKIDNRFLGKTFVITGTLPTMKRDEAAEIIQSF 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  VS  +S++T  ++ G+  GSKL KAQQLG+ I+ EE    +++
Sbjct: 618 GGKVSGSVSKRTSFVLAGEEAGSKLTKAQQLGISIITEEDLKDMIK 663


>gi|73667316|ref|YP_303332.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake]
 gi|123732189|sp|Q3YRC1|DNLJ_EHRCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|72394457|gb|AAZ68734.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake]
          Length = 677

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/708 (37%), Positives = 412/708 (58%), Gaps = 39/708 (5%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+A+ EL  L  +I +HD  YY    P I D+EYD L  + + I  +FP+LA +   
Sbjct: 1   MKQEEAKLELDKLNSQIQHHDFLYYTQDNPQITDAEYDVLCHKRNLILESFPELASN--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N   + +G   +    KV H+   LSL+  +N +D+ KFITR  +     +  SI  + E
Sbjct: 58  NNYQDNVGSTPDAKFAKVKHAEKMLSLDNAFNQQDIEKFITRTKKLLDMDNSQSIAISCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG   ++ Y+KG+   A+ RG+G+ GE+++  ++ I  +P  +  N P+ +EVRGE+
Sbjct: 118 LKIDGLSFSVIYKKGEISQASTRGNGYFGENITNNVKTIKNLPHTIQ-NAPDSLEVRGEI 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           YI ++DF+ LN          +ANPRNAA+G +R+L+      R L +F++ +  T  + 
Sbjct: 177 YIDRSDFIQLNK-----DGNNFANPRNAAAGSVRQLDINITAQRKLKYFMYTIVNTKCL- 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E L +++ LGF VN      N     +++YN+  + RS + YDIDG++YKV++  
Sbjct: 231 --TQEETLNQLKTLGFCVNEHTITTNNIEDALNFYNQFYNNRSNISYDIDGIIYKVNDIK 288

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG   +SPRW I++KF   +A T +  I IQIGRTG+LTP+A L P+NIGG ++T 
Sbjct: 289 SQHILGATNKSPRWAIAYKFPAAEAKTLVNKISIQIGRTGVLTPIAELSPINIGGVIVTR 348

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN+  I+            +DIR GD V+VKRAG+VIP+VVD+  N R  +   F F
Sbjct: 349 ASLHNKSEIER-----------KDIREGDYVIVKRAGDVIPQVVDVDKNLRAQELTKFIF 397

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S + +           +  CTG L C  Q LE++KHFVS+DAFNI G GK+Q
Sbjct: 398 PTTCPSCGSNLFQAEQE------VSIYCTGELFCKNQILEKIKHFVSKDAFNIIGFGKKQ 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L FF++       I    DIFTL+ +   S  K+E++ G+G+ S+ NL+ +IN  + ISL
Sbjct: 452 LLFFYEQ----GLITNIVDIFTLEEKISNSDLKLESLHGWGEKSIHNLFSAINNSKTISL 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E FIF+LGIR VG  IA+ LAK++LSY+ +  E+  +      D   L+ +  +G     
Sbjct: 508 ENFIFALGIRFVGKYIAKILAKHFLSYEKWYHEMLRLAQ----DENYLLNIQQIGHKTIH 563

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  F+    N+  +  L++ ++ +  +   ++ S +  K +VFTG L  + RH+A+   
Sbjct: 564 SLKMFFTEQHNLDTINNLVRHLTITDAKTTSHL-SLLHGKTIVFTGELSNMSRHEAKTKS 622

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              GA VS+ LS+ TD +IVG+NPGSK +KAQ L ++I+ E+ +L  +
Sbjct: 623 ETAGAKVSSSLSKNTDFLIVGNNPGSKYKKAQSLNIQILTEDLWLQYI 670


>gi|71275191|ref|ZP_00651478.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon]
 gi|170731182|ref|YP_001776615.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M12]
 gi|71164000|gb|EAO13715.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon]
 gi|167965975|gb|ACA12985.1| DNA ligase (NAD(+)) [Xylella fastidiosa M12]
          Length = 837

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/860 (30%), Positives = 413/860 (48%), Gaps = 172/860 (20%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP++        +  + L + +   +  Y+   +P I D++YD + R  DA+   +PDL
Sbjct: 7   MIPLDP------AQRAAELRRRLQEANYHYHVLDQPRIPDADYDRMLRELDALEATYPDL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +     
Sbjct: 61  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITARLGETA--- 114

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP+ L  +  P +
Sbjct: 115 PSFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 174

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+P     R L+F+ +G+
Sbjct: 175 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 234

Query: 244 GK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+   ++      E+L  +R  GFPV+  V       G+++YY  M++IR TLP+DIDG+
Sbjct: 235 GEVADDVSFHSHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q ++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 295 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 355 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P    +S P  CP+C S +VR+         A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 404 PGVTAWSMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMD 457

Query: 483 IEGLGKQQLDFFFKS--------------------------EDPAFSIRIPADIFTLQRR 516
           +EGLG + ++    +                          + P   +R   D  T  R 
Sbjct: 458 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 517

Query: 517 QQTST-------------------------TKIENILGFGDV----SVTNLYDSINKRRN 547
           QQ                             +  +              NL  +I++ R 
Sbjct: 518 QQLEEILRTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQ 577

Query: 548 ISLERFIFSLGIRHV--------------------------------GAEIARSLAKYYL 575
            +LERF+F+LG+ HV                                G E+AR++  +++
Sbjct: 578 TTLERFLFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKCVPDIGGEVARAIG-HFM 636

Query: 576 SYQNFAQEINNIIAH------------------NNDDWLSLIRVPLVGDI---------- 607
                 Q I++++                         L  + +P +  +          
Sbjct: 637 DQPANQQAIDDLVERGVRITDAHPPTSTLRDQLTLASLLEHLEIPKITPMRAVQLATLAP 696

Query: 608 ---------------------IAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNV 643
                                 AQ++ E++Q+P NI     L          +   ++  
Sbjct: 697 TLPLLAEADLDALLQAGVPQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQLPSPDRAH 756

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           ++ +  + +V TG L  + R  A   +  LGA +   +S+KT  ++ G++PGSKL+KA  
Sbjct: 757 TAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHA 816

Query: 704 LGVKIMNEEQFLFLLQQYNT 723
           L V I +E + L  L+QY+ 
Sbjct: 817 LHVDIWDEARLLDFLEQYSA 836


>gi|294054681|ref|YP_003548339.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221]
 gi|293614014|gb|ADE54169.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221]
          Length = 711

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/702 (30%), Positives = 360/702 (51%), Gaps = 47/702 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE++ L   I  HD  YY+ ++P I D  YD LK R  A+    P+L   +  + P   +
Sbjct: 54  KEIAQLRAAIEKHDRLYYKKAQPEIDDQAYDRLKARLTALESQNPEL---DFGSSPTQTV 110

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +   S     H  P LSL+  +N ++L  F  R+ +   +  + ++ F +EPKIDG  
Sbjct: 111 GDDRLESFESYVHRKPMLSLDNTYNRDELIDFGKRLEK---RFPNQALNFLVEPKIDGVA 167

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ YE+G+F+ A  RG+G  G+D++  +R I  +P  +    P+I+EVRGE+Y+  ++F
Sbjct: 168 VSLTYEEGQFIRAVSRGNGSEGDDITQNVRHIEGLPLQIEE-APDILEVRGEIYMRHSEF 226

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS-EIFAKGQYE 256
             +N    A G   YANPRN A+G ++ LNP +   R L+  ++G+G    + +   Q E
Sbjct: 227 ERINAVREAAGEPLYANPRNLAAGTIKLLNPNEARARRLDIVLYGIGACEPQNYFVRQTE 286

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           + Q+++   FPV      ++      +   E+ S R    Y  DG V K+D+F+LQ+Q G
Sbjct: 287 IQQRLKEWHFPVLEKYWLSSNIVEAWASIEELDSRRQRFTYPTDGAVVKLDDFALQQQAG 346

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF  ++A T L +I +QIGRTG +TPVA LEPV + G  ++ ATLHNE
Sbjct: 347 FTSKAPRWAIAYKFEAERAETLLKEISLQIGRTGAVTPVAILEPVQLAGTTVSRATLHNE 406

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR GD VLV++AGE+IP+V+ + +++R  D+  F F      
Sbjct: 407 DEIRR-----------KDIRPGDTVLVQKAGEIIPQVLGVNISKRPADSTTFDFAQHLSS 455

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                 RD      ++V+ H          +Q   L+HF SR   +IE LG   ++    
Sbjct: 456 LGIDAERDPGEAVWRIVSKHD-------PIRQQRALQHFASRTCMDIENLGTAVVEQLVS 508

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                   R  AD++ LQ            +  F + S  NL +++   +   + + I  
Sbjct: 509 R----GLARTVADLYQLQ------LDDFLQLEKFAEKSAQNLVEALEASKQRPVWQLIHG 558

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI HVG + A+ L  ++ S    A+     +            +  +G I+AQ+I  ++
Sbjct: 559 LGIPHVGKQSAKDLEAHFESLDALARASEEQLEA----------IDGIGSIMAQSIHAWF 608

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           ++  N   ++ L         +  +     +  K +V TGTL  + R++A   +   G  
Sbjct: 609 EDSENAELLDRLRTYGLNFRSQRSEPTGGALAGKTVVLTGTLPTMTRNEATALIEAAGGR 668

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            S+ +S+KTD ++ G+  GSK  KA++LGV I++E+ F  L+
Sbjct: 669 TSSSVSKKTDYLLTGEAAGSKYTKAEKLGVPILDEDAFRALI 710


>gi|50364975|ref|YP_053400.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma
           florum L1]
 gi|81391966|sp|Q6F1V7|DNLJ_MESFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50363531|gb|AAT75516.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma
           florum L1]
          Length = 666

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/710 (31%), Positives = 372/710 (52%), Gaps = 48/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQA K ++ L  +++     YY    P + D+EYD    +   + + FP+L  S   
Sbjct: 1   MTKEQASKLINDLRLKLNEWAKEYYVLDNPSVDDAEYDKTIHQLLDLENQFPELITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    K+GG ++    K TH  P LSL  I++ ++   F  ++ +    +++    +T E
Sbjct: 58  DSITQKVGGIVSDKFEKHTHKYPMLSLGDIFSWDEFINFNKQVAKVTGTENN---EYTAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ Y+ G       RGDG  GE+V+  ++ I +IP  LS+   + IE+RGEV
Sbjct: 115 LKIDGLSISLIYKDGVLQKGVTRGDGKVGENVTTNVKTIKSIP--LSIPSKDEIEIRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K +F  +N+E +  G + +ANPRNAA+G LR+L+   +  R L+ +++         
Sbjct: 173 FLGKKEFAKINEERLLNGDQLFANPRNAAAGTLRQLDSKIVAERNLDAYLYYY-FNENNP 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++ + +++ LG  +N   +   T   +  Y       R+ L Y+IDG+V+K+++  
Sbjct: 232 INTQFDSINQIKNLGLKINKETKICKTLEEVKLYIEYYTEKRNELDYEIDGIVFKLNDKK 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+++G  A++P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV I G  ++ 
Sbjct: 292 LQEEVGYTAKTPKWAIAYKFPAEVKQTKLLDIFPTVGRTGKITYNAKLEPVQIAGTTVSA 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+L+N +YI             +D+R+   V VK+AG++IP+V+  I +E+      +  
Sbjct: 352 ASLNNAEYI-----------MAKDLRINSIVKVKKAGDIIPEVISAIKDEKFDLLPIWEK 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP C   + +              C     C AQ L  L+HF SR A NI GLG Q 
Sbjct: 401 DVQCPACNELLEKTSTE------VDQFCVN-FNCPAQILRSLEHFASRGAANIVGLGGQT 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     I   ADIF ++  ++     I N   FG+ S  NL  SI + +N S 
Sbjct: 454 IKKLFEEK----LITNIADIFKVEEHKEN----IINFEKFGEKSFENLIASIKESKNNSF 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVG++ A +LA+ Y +  N            N  +  L  +  VG+++A 
Sbjct: 506 EKTLFGLGIRHVGSKTALTLAQIYKNIDNLK----------NATYEELSSIDSVGEVLAM 555

Query: 611 AIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +IV++++   N+  +      +V+       KN  S I  K  V TGTL +  R   ++ 
Sbjct: 556 SIVDWFKIESNLQLINELKSFDVNFEYLGQAKNTESTISEKSFVITGTLSE-SRDYFKDI 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +      V   +S+KTD ++ G+N GSKL KA++L VK++NEE+F  +L+
Sbjct: 615 IELNNGKVIGSVSKKTDYVLAGENAGSKLTKAEELNVKVINEEEFFAILK 664


>gi|71899829|ref|ZP_00681979.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
 gi|254782317|sp|B0U5G7|DNLJ_XYLFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71730420|gb|EAO32501.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
          Length = 831

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/860 (30%), Positives = 413/860 (48%), Gaps = 172/860 (20%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP++        +  + L + +   +  Y+   +P I D++YD + R  DA+   +PDL
Sbjct: 1   MIPLDP------AQRAAELRRRLQEANYHYHVLDQPRIPDADYDRMLRELDALEATYPDL 54

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +     
Sbjct: 55  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITARLGETA--- 108

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP+ L  +  P +
Sbjct: 109 PSFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 168

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+P     R L+F+ +G+
Sbjct: 169 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 228

Query: 244 GK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+   ++      E+L  +R  GFPV+  V       G+++YY  M++IR TLP+DIDG+
Sbjct: 229 GEVADDVSFHSHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 288

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q ++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 289 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 348

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 349 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 397

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P    +S P  CP+C S +VR+         A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 398 PGVTAWSMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMD 451

Query: 483 IEGLGKQQLDFFFKS--------------------------EDPAFSIRIPADIFTLQRR 516
           +EGLG + ++    +                          + P   +R   D  T  R 
Sbjct: 452 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 511

Query: 517 QQTST-------------------------TKIENILGFGDV----SVTNLYDSINKRRN 547
           QQ                             +  +              NL  +I++ R 
Sbjct: 512 QQLEEILRTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQ 571

Query: 548 ISLERFIFSLGIRHV--------------------------------GAEIARSLAKYYL 575
            +LERF+F+LG+ HV                                G E+AR++  +++
Sbjct: 572 TTLERFLFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKCVPDIGGEVARAIG-HFM 630

Query: 576 SYQNFAQEINNIIAH------------------NNDDWLSLIRVPLVGDI---------- 607
                 Q I++++                         L  + +P +  +          
Sbjct: 631 DQPANQQAIDDLVERGVRITDAHPPTSTLRDQLTLASLLEHLEIPKITPMRAVQLATLAP 690

Query: 608 ---------------------IAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNV 643
                                 AQ++ E++Q+P NI     L          +   ++  
Sbjct: 691 TLPLLAEADLDALLQAGVPQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQLPSPDRAH 750

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           ++ +  + +V TG L  + R  A   +  LGA +   +S+KT  ++ G++PGSKL+KA  
Sbjct: 751 TAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHA 810

Query: 704 LGVKIMNEEQFLFLLQQYNT 723
           L V I +E + L  L+QY+ 
Sbjct: 811 LHVDIWDEARLLDFLEQYSA 830


>gi|325911416|ref|ZP_08173828.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D]
 gi|325476766|gb|EGC79920.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D]
          Length = 672

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/716 (30%), Positives = 361/716 (50%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +      D    +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVGHVVD----Y 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD
Sbjct: 232 ET-ITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +
Sbjct: 291 DLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P
Sbjct: 351 VSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            +   AD++ L   Q         +  F + S+ NL ++I   + 
Sbjct: 453 PKIVRQLIALH----LVNDIADLYFLSATQLA------KLDHFKEKSIQNLLNAIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +F LGI HVGA+ AR +AK +       +               L+++  +G  
Sbjct: 503 NSVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++V++++       ++ L               +    +  + K +V TG L    R
Sbjct: 553 IAESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L 
Sbjct: 613 ADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLN 668


>gi|172040410|ref|YP_001800124.1| NAD-dependent DNA ligase LigA [Corynebacterium urealyticum DSM
           7109]
 gi|254781300|sp|B1VG01|DNLJ_CORU7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171851714|emb|CAQ04690.1| DNA ligase [Corynebacterium urealyticum DSM 7109]
          Length = 712

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/734 (28%), Positives = 345/734 (47%), Gaps = 59/734 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++ +  ++  SL  ++ +H + YY Y  P I D+E+DAL  R     ++ P+        
Sbjct: 22  ALAELAQQWQSLADQVRHHREVYY-YGNPEISDAEFDALLTRLQEFENSHPEAVTGP--- 77

Query: 73  GPLNKIGGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            P  ++      S     V H  P LSL+ +++ E L  ++ R           +  +  
Sbjct: 78  SPTTEVAPSPPESSPFRNVDHQEPMLSLDNVFDTEQLSSWLDRT---------PAKTYLT 128

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIE 186
           E KIDG  I + Y  G    A  RGDG +GED++   R +  IP  L       +PEI+E
Sbjct: 129 ELKIDGASINLLYRNGVLELALTRGDGTTGEDITHNARTLSDIPARLQPSEDFPVPEIVE 188

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGK 245
           +RGEV+I   DF  +N +  A G+K +ANPRNAA+G +R+ +P +  R  L    HG+G 
Sbjct: 189 IRGEVFIRVEDFAKMNAQRQAEGQKMFANPRNAAAGAMRQKDPAETARRPLRLICHGIGA 248

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q+   + +   G PV+   +Q ++   ++         R    +++DGLV K
Sbjct: 249 REGFTPASQHAAYEALAAWGLPVSPYTKQVHSAKEVLEQVAYWADHRHDADHEMDGLVIK 308

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   Q++LG  +R+PRW I++K+  ++A TRL DI + IGRTG  TP A +EP  + G
Sbjct: 309 VDDTESQQRLGTTSRAPRWAIAYKYPPEEARTRLHDIRLGIGRTGRATPYAVMEPKYVAG 368

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +T ATLHN                 + +R+GD +++++AGEVIP+V+  + + R+   
Sbjct: 369 STVTMATLHNPSE-----------AHRKGVRLGDEIMIRKAGEVIPEVLGPVEDARNGAE 417

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F F S CP C + +     P  G   A  RC     C  Q   RL +   R AF+I+ 
Sbjct: 418 REFLFSSLCPECGTPL----APARGD-DADWRCPNTRYCPGQLHTRLTYIAGRGAFDIDA 472

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++           +  +     +F+L       T       G  +     L  ++   
Sbjct: 473 LGEKAAYDLI----HSGVLPDETGLFSLTEEDLRRTDAYTTKSGALNKQGETLLTTLAAA 528

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           + + L R I +L IRHVG   A++LA +Y S  + A            D  ++  V  VG
Sbjct: 529 KEVDLWRVIVALSIRHVGPTAAKALANHYGSIPDVAAA----------DVETMSTVDGVG 578

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEV---------SPSIGRHEKNVSSEIENKKLVFTG 656
            IIA+++ +++    +   V+A               PS        +  +    +V TG
Sbjct: 579 PIIAESVRDWFAVSWHQEIVDAWAAAGVRMEQDVTEQPSADAAGSIQADLLAGLSIVVTG 638

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL+   R  A+E +   G   +  +S+KTD ++ G   GSKL KA++LG+ +++E  F  
Sbjct: 639 TLEDFDRSSAKEAIESRGGKATGSVSKKTDYLVAGAKAGSKLTKAEELGIPVLDEAGFHK 698

Query: 717 LLQQYNTTLRIHDD 730
           LL +        +D
Sbjct: 699 LLSEGPGKGDAEED 712


>gi|292657108|ref|YP_003537005.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2]
 gi|291370943|gb|ADE03170.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2]
          Length = 699

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/722 (33%), Positives = 377/722 (52%), Gaps = 48/722 (6%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P E+LS E A  + + L + +  HD  YY  + P++ D+ YDAL  R  A+  AF  
Sbjct: 20  EFEPAESLSREAAEGQAALLREAVREHDHRYYVAADPLVSDAAYDALFSRLVALEDAFD- 78

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +  N P N++GGE   +L  V H  P LS+++  + +DLR+F  R+ R     +  
Sbjct: 79  ---LDTTNSPTNRVGGEPIDALETVEHVAPMLSIDQSTDADDLREFDERVRR-----EVG 130

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           ++ +  EPK DG  + + YE G+FV AA RGDG  G+DVSA ++ IPT+P  L  + P+ 
Sbjct: 131 AVDYVCEPKFDGLSVEVVYEDGEFVRAATRGDGRRGDDVSAQVKTIPTVPLSLRGDHPDR 190

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           + VRGE+Y+ K+DF  LN   +  G   +ANPRNAA+G LR L+P+ +  R L  F + +
Sbjct: 191 LAVRGEIYMPKSDFSDLNARRVEAGEDAFANPRNAAAGTLRNLDPSVVADRPLAVFFYDI 250

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              S      Q+  L ++R  G  V + + +A      + Y + M++ R  L Y+IDG V
Sbjct: 251 LDASAR-PDSQWAALDRLREWGLRVTDRIERAEDVAEAIDYRDRMQAARDDLDYEIDGTV 309

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD    +++LGE++RS RW  ++KF  +   T + DI +Q+GRTG LTPVA L+PV++
Sbjct: 310 IKVDSRDARERLGEKSRSVRWAFAYKFPARHEVTTVRDIVVQVGRTGRLTPVAILDPVDV 369

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++ ATLHN D            R    + VGDRV VKRAG+VIP+VV++  +    
Sbjct: 370 GGVTVSRATLHNPDE-----------RAALGVAVGDRVRVKRAGDVIPQVVEVTED---- 414

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               + FP  CP+C S V RD             C+GGL+C AQ+   + HF  + A +I
Sbjct: 415 GGGCYEFPDECPVCGSAVDRD--------GPLAFCSGGLSCPAQREASIGHFAVKGAMDI 466

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG++++         A  +   AD++ L             + G+G+ S  NL  ++ 
Sbjct: 467 DGLGEERVAQLVD----AGLVETVADLYDLTADDLA------ELEGWGETSAENLVAAVE 516

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             ++ SL+ F+  L I  VG   AR LA+ + S + F  E +      +     L  VP 
Sbjct: 517 NAKHPSLDSFLVGLSIPEVGEATARGLAREFGSIEAFPIEADAEEDEFDAFEERLTTVPD 576

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG+ +A+ + +F++N  N   + ALL           ++   E++    V TGTL    R
Sbjct: 577 VGETVARRVRDFFENADNRAVIRALLDRGV--DPEPVESGGDELDGLTFVVTGTLAA-SR 633

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
               E V   G  V+  +S  TD ++VG+NPG SK + A+   V  + E +F  LL +  
Sbjct: 634 SDVTELVESHGGNVTGSVSGNTDYLVVGENPGRSKRDDAEANDVPTLAETEFEALLAERG 693

Query: 723 TT 724
             
Sbjct: 694 VA 695


>gi|297566494|ref|YP_003685466.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946]
 gi|296850943|gb|ADH63958.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946]
          Length = 670

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/706 (32%), Positives = 360/706 (50%), Gaps = 51/706 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A++ +  L +EI YH+  YY    P+I D+EYD L R    +   +P+L     P+ P 
Sbjct: 10  EAQRRIHQLREEIRYHNYRYYVLDDPVISDAEYDRLLRELKELEARYPELV---TPDSPT 66

Query: 76  NKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +G G++  S   + H  P  SL+  +  ED+R F  RI R           + LE KI
Sbjct: 67  QTVGPGKIETSFAAIPHPTPLYSLDNAFGPEDIRLFEERIARSLGMPA--PFPYVLEYKI 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + + YE+G  ++ A RG+G  GEDV+  + A+  IP  + +  P  +EVRGEVY+ 
Sbjct: 125 DGLSVNLYYEEGTLLWGATRGNGQVGEDVTPNLMAVEGIPHRV-VGAPPRLEVRGEVYLP 183

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAK 252
              FL +N E+   G  P+ NPRNAA+G LR+ +P     R L   ++ +G   +E   +
Sbjct: 184 IETFLKVNAELEEQGLPPFKNPRNAAAGSLRQKDPRVTAKRGLKAVLYSIGLGLAESEVR 243

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L+ ++ LGF +    ++A  +  +   Y  M + R  LPY+ DG+V K+D+  LQ
Sbjct: 244 SQSELLEYLKHLGFAIEPHYQKAVGWRAVEETYQRMLAKRRQLPYEADGVVVKLDDIRLQ 303

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG  ++SPRW I++KF  ++  TR++ ++  +GRTG +TPVA LEPV+I G+ ++   
Sbjct: 304 ADLGFTSKSPRWAIAYKFPAEEKITRVVGVEFTVGRTGRITPVANLEPVDIEGSTVSRVV 363

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+ Y++ L           D+  GD+VL+ +AG VIP+V+ +I   R   A   ++P+
Sbjct: 364 LHNQSYLEEL-----------DLHYGDQVLIHKAGGVIPEVLRVIPEARPKGAVKVTYPT 412

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +V +           H C   L C A+  E + H+ SR A +I+GLG++ + 
Sbjct: 413 RCPECGTPLVLE--------GKIHLCPNPL-CPAKAYEAILHYASRGAMDIQGLGEKLVA 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      +R P+D++ L + Q     ++      G+ S  NL D I   +   LER
Sbjct: 464 KLLAE----GLVRDPSDLYKLTKEQLMGLERM------GEKSAQNLIDQIEASKGRGLER 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGI  VGA +AR+LA+ +                       L  V  V    A+ I
Sbjct: 514 LLFALGIPQVGAALARTLARRFGHLDRLLAA----------SVQDLDEVEDVALPTAERI 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            +          +E L +    S    EK     ++    V TG L +  R +    +  
Sbjct: 564 YQTLHQKDMRAYIERL-RAAGVSFEAKEKPQGDRLKGLTFVLTGELSRP-REEILRRLEA 621

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           LGA VS+ +S+KT  ++ G+  GSKL+KA++LGV +++E     LL
Sbjct: 622 LGAKVSSSVSKKTSYVVAGEGAGSKLQKARELGVPVLDEAGLEALL 667


>gi|309808880|ref|ZP_07702761.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a]
 gi|308167878|gb|EFO70015.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a]
          Length = 672

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/716 (30%), Positives = 362/716 (50%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG +   L KV H  P LS+  +++ ++L +F  RI +      D    +
Sbjct: 59  -DPDSITQRVGGNIKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVGHVVD----Y 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKVGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD
Sbjct: 232 ET-ITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +
Sbjct: 291 DLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P
Sbjct: 351 VSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            +   AD++ L   Q         +  F D S+ NL ++I   + 
Sbjct: 453 PKIVRQLIALH----LVNDIADLYFLSAAQLA------KLDHFKDKSIQNLLNAIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +F LGI HVGA+ AR +AK +       +               L+++  +G  
Sbjct: 503 NSVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++V++++       ++ L               +    +  + K +V TG L    R
Sbjct: 553 IAESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L 
Sbjct: 613 ADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLN 668


>gi|9107768|gb|AAF85353.1|AE004063_2 DNA ligase [Xylella fastidiosa 9a5c]
          Length = 837

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/860 (30%), Positives = 413/860 (48%), Gaps = 172/860 (20%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP++        +  + L   +   +  Y+   +P I D++YD + R  DA+  A+PDL
Sbjct: 7   MIPLDP------AQRAAELRCRLQEANYHYHVLDQPRIPDADYDRMLRELDALEAAYPDL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +     
Sbjct: 61  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITACLGETAPG- 116

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP+ L  +  P +
Sbjct: 117 --FSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 174

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+P     R L+F+ +G+
Sbjct: 175 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 234

Query: 244 GK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ T ++      E+L  +R  GFPV+  V        +++YY  M++IR TLP+DIDG+
Sbjct: 235 GEVTDDVSFHRHSEILASLRAWGFPVSPLVELVYGSEELLNYYRRMETIRDTLPFDIDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q+++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 295 VYKLDDLSGQREMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 355 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVTVITDSRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             A  +S P  CP+C S +VR+         A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 404 LGATAWSMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMD 457

Query: 483 IEGLGKQQLDFFFKS--------------------------EDPAFSIRIPADIFTLQRR 516
           +EGLG + ++    +                          + P   +R   D  T  R 
Sbjct: 458 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 517

Query: 517 QQTST-------------------------TKIENILGFGDV----SVTNLYDSINKRRN 547
           QQ                             +  +              NL  +I++ R 
Sbjct: 518 QQLEEILRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQ 577

Query: 548 ISLERFIFSLGIRHV--------------------------------GAEIARSLAKYYL 575
            +LERF+F+LG+ HV                                G E+AR++  +++
Sbjct: 578 TTLERFLFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKCVPDIGGEVARAIG-HFM 636

Query: 576 SYQNFAQEINNIIAH------------------NNDDWLSLIRVPLVGDI---------- 607
                 Q I++++                         L  + +P +  +          
Sbjct: 637 DQPANQQAIDDLVERGVRITDTHPPTSTLRDQLTLASLLEHLDIPKITPLRAVQLAALAP 696

Query: 608 ---------------------IAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNV 643
                                 AQ++ E++Q+P NI     L          +   ++  
Sbjct: 697 TLPLLAEAALDTLLQAGVSQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQLPSADRAH 756

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           ++ +  + +V TG L  + R  A   +  LGA +   +S+KT  ++ G++PGSKL+KA  
Sbjct: 757 TAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHA 816

Query: 704 LGVKIMNEEQFLFLLQQYNT 723
           L V I +E + L  L QY+ 
Sbjct: 817 LHVDIWDEARLLAFLGQYSA 836


>gi|302185110|ref|ZP_07261783.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           642]
          Length = 787

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/812 (28%), Positives = 378/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  ++  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAQLDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPEVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+K
Sbjct: 238 TSADIADTHIGVLETLKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KAVHVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNI----------------------------------EGLGKQQLDFFFKSEDPAFSIR 505
           A +I                                  EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              N+ D++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           +          A  + DWL + +   + +  A+++ +F+ +  +     A+EA LK+   
Sbjct: 647 E----------AIISADWLDMRQT--LPEKQAKSVRDFFDDSVHAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKTVEGLPLAGQTWVLTGSLERMSRDIAKEKLESLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++E+  L  L +    +
Sbjct: 755 AGSKLTKANELGLTVLDEDALLKRLTELGVAV 786


>gi|309804542|ref|ZP_07698607.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c]
 gi|309809394|ref|ZP_07703256.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D]
 gi|312873385|ref|ZP_07733436.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d]
 gi|308165934|gb|EFO68152.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c]
 gi|308170305|gb|EFO72336.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D]
 gi|311091069|gb|EFQ49462.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d]
          Length = 672

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/716 (30%), Positives = 361/716 (50%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +      D    +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVGHVVD----Y 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD
Sbjct: 232 ET-ITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +
Sbjct: 291 DLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P
Sbjct: 351 VSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            +   AD++ L   Q         +  F D S+ NL ++I   + 
Sbjct: 453 PKIVRQLIALH----LVNDIADLYFLSAAQLA------KLDHFKDKSIQNLLNAIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +F LGI HVGA+ AR +A+ +       +               L+++  +G  
Sbjct: 503 NSVELLLFGLGIDHVGAKAARLIAQKFHDLNTIREC----------SIADLMQIDTIGQT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++V++++       ++ L               +    +  + K +V TG L    R
Sbjct: 553 IAESMVKYFEQQSVKELMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L 
Sbjct: 613 ADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLN 668


>gi|125623311|ref|YP_001031794.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|166215816|sp|A2RIF3|DNLJ_LACLM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|124492119|emb|CAL97048.1| DNA ligase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070060|gb|ADJ59460.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 686

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/735 (30%), Positives = 356/735 (48%), Gaps = 83/735 (11%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
               ++  L  +++     YY   +P + DSEYD L      +    P L R+   + P 
Sbjct: 2   NIESKIKELTDQLNQFAYEYYTLDEPSVEDSEYDHLYHELVKLEQENPQLVRA---DSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           ++ GG +     K  H     SL  +++ E+L  +  R+ +     +  +  +  E KID
Sbjct: 59  HRTGGVILDGFVKFRHPYNLYSLGDVFSREELALWEERVRK-----EIVNPEYICELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YE G  V AA RGDG +GE+++  ++ I  +P  L   I   I VRGE Y+ +
Sbjct: 114 GLSLSLYYENGLLVTAATRGDGTTGENITENVKRIKDVPLKLKEAI--DIVVRGEAYLPR 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            +F  LN E    G  P+ANPRNAA+G LR+L+   +  R L  F++   + S      Q
Sbjct: 172 QNFAKLNAERELEGAAPFANPRNAAAGTLRQLDTKIVAKRGLATFLY--QEASPATNDTQ 229

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E+L+    LGF VN   + A     I  +  E   +R  LPYDIDG+V KV+  + Q++
Sbjct: 230 EEVLEYFEELGFQVNPERKFARNLDEIWEFIEEATRLRDELPYDIDGVVIKVNNLAEQEE 289

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++PRW I++KF  +QA T +L +D  +GRTG++TP A +  V +    +  ATLH
Sbjct: 290 LGFTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTAVLLAQTTVARATLH 349

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER--------HPDAQ 426
           N DYI+            +DIR  D+V++ +AG++IPKV  +++ +R           A 
Sbjct: 350 NVDYIQ-----------EKDIRNHDKVMIYKAGDIIPKVGKVLLEKRKPARHLRKTHRAN 398

Query: 427 PFSF------------------------PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
            + +                        P+ CP C S ++   +        A RC   L
Sbjct: 399 KYVWTRFGRRSVEKGLVFSKREDNRVKIPTQCPECDSDLIHFEDE------VALRCVNPL 452

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522
            C AQ  E+L HF SRDA NI GLG   +   F  +     +   AD++ L      +  
Sbjct: 453 -CPAQIREKLIHFASRDAMNIVGLGPSVISQLFDKK----LVTDVADLYQLTVEDLLTLD 507

Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
           K++      +     +  +I + R  S E+ +F LGIRHVG + A+ L + + + +  +Q
Sbjct: 508 KVK------ETLAQKIVSAIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSQ 561

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
                I+           +P +G +IA A+V +++       ++ L             N
Sbjct: 562 ASEEEIS----------EIPSLGGVIATAVVSYFETAGAKTLLDELENAGLNFAYLGAVN 611

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
           V   +  K +V TG L  ++R +A+E +  LGA VS  +S+KTD+++ G+  GSKL KAQ
Sbjct: 612 VEGILSGKTVVLTGKLTTLKRTEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQ 671

Query: 703 QLGVKIMNEEQFLFL 717
            LG++I +E+  L L
Sbjct: 672 DLGIEIWSEQDLLDL 686


>gi|37520296|ref|NP_923673.1| NAD-dependent DNA ligase LigA [Gloeobacter violaceus PCC 7421]
 gi|81710991|sp|Q7NMN8|DNLJ_GLOVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|35211289|dbj|BAC88668.1| DNA ligase [Gloeobacter violaceus PCC 7421]
          Length = 668

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/708 (29%), Positives = 347/708 (49%), Gaps = 52/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +  +   +L   +      YY    P + D+ YD   R    +   +P+L     P+ 
Sbjct: 6   PPEIEEHTRTLRALLHRWGYAYYVLDAPEVSDAIYDQHYRELVDLESRYPELV---SPDS 62

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +   VTH +P  SLE  ++  +L K+  R+ R         + F  E K
Sbjct: 63  PTRRVGERPASAFVSVTHRVPMFSLENAFSQAELEKWGERLLRAIG----PGLEFICELK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           IDG+   + YE G  V  A RGDG  GE+++  +R I  IP ++L   +P ++EVRGE +
Sbjct: 119 IDGSATALSYEDGVLVRGATRGDGVEGEEITQNLRTIRAIPLKLLGGEVPAVLEVRGEAF 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           I +++F  +N E  A G K +ANPRNA +G LR+L+   +  R L FF +         A
Sbjct: 179 IPRDEFERINQERQAAGEKLFANPRNACAGTLRQLDSRVVASRRLGFFAYTAHYGR---A 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q+E L ++   GF VN           + ++    ++ R  LPYD DG+V KV+ F  
Sbjct: 236 ESQWEALAELESHGFRVNPHRSLCRDLAEVRTFCEHWENHRHELPYDTDGVVVKVNAFDH 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+++G  ++ PRW I+ K+  ++ ST +  I +Q+GRTG LTPVA L+PV + G  ++ A
Sbjct: 296 QREVGFTSKFPRWAIAFKYPAEEKSTVVEAIAVQVGRTGALTPVAELQPVAVAGTTVSRA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D I+ L           D+RVGD V++++AGE+IP+VV +I   R P+A P+ FP
Sbjct: 356 TLHNQDRIESL-----------DVRVGDTVIIRKAGEIIPEVVRVIGELRPPEAVPYVFP 404

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + VVR          AA RC     C A    +L H+ +  A  I+G+G + +
Sbjct: 405 QTCPECGTAVVRAPGE------AAVRCPNPR-CPALIRGKLGHWCA--ALEIDGIGDKLI 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       +   AD++ L   Q     ++         S   + + +++       
Sbjct: 456 ARLVS----LGLVHTVADLYELSAEQLAGLERLGA------RSAAKIVEQLDRSHRQPWS 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LG+RH+GA ++  LA+ + S            A    D  ++  +   G+ +A++
Sbjct: 506 RVLYGLGLRHIGASVSVELARAFAS----------ADALARADLAAIASLYGFGEELARS 555

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +VE++    N   +E L        G      SS +     V TGTL  + R +    + 
Sbjct: 556 VVEWFAQAENRALLERLKAHGLQLAGGGRAAQSSALAGLTFVITGTLPTLSREECTALIE 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G  V++ +S +T  ++ G+  GSKL +AQ L V +++EEQ   L++
Sbjct: 616 SHGGKVTSSVSSRTSYVVAGEKAGSKLARAQDLKVAVLDEEQLRALIE 663


>gi|77747612|ref|NP_299833.2| NAD-dependent DNA ligase LigA [Xylella fastidiosa 9a5c]
 gi|166216281|sp|Q9PAG2|DNLJ_XYLFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 831

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/860 (30%), Positives = 413/860 (48%), Gaps = 172/860 (20%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP++        +  + L   +   +  Y+   +P I D++YD + R  DA+  A+PDL
Sbjct: 1   MIPLDP------AQRAAELRCRLQEANYHYHVLDQPRIPDADYDRMLRELDALEAAYPDL 54

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +     
Sbjct: 55  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITACLGETAPG- 110

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP+ L  +  P +
Sbjct: 111 --FSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 168

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+P     R L+F+ +G+
Sbjct: 169 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 228

Query: 244 GK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ T ++      E+L  +R  GFPV+  V        +++YY  M++IR TLP+DIDG+
Sbjct: 229 GEVTDDVSFHRHSEILASLRAWGFPVSPLVELVYGSEELLNYYRRMETIRDTLPFDIDGI 288

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q+++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 289 VYKLDDLSGQREMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 348

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 349 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVTVITDSRP 397

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             A  +S P  CP+C S +VR+         A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 398 LGATAWSMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMD 451

Query: 483 IEGLGKQQLDFFFKS--------------------------EDPAFSIRIPADIFTLQRR 516
           +EGLG + ++    +                          + P   +R   D  T  R 
Sbjct: 452 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 511

Query: 517 QQTST-------------------------TKIENILGFGDV----SVTNLYDSINKRRN 547
           QQ                             +  +              NL  +I++ R 
Sbjct: 512 QQLEEILRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQ 571

Query: 548 ISLERFIFSLGIRHV--------------------------------GAEIARSLAKYYL 575
            +LERF+F+LG+ HV                                G E+AR++  +++
Sbjct: 572 TTLERFLFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKCVPDIGGEVARAIG-HFM 630

Query: 576 SYQNFAQEINNIIAH------------------NNDDWLSLIRVPLVGDI---------- 607
                 Q I++++                         L  + +P +  +          
Sbjct: 631 DQPANQQAIDDLVERGVRITDTHPPTSTLRDQLTLASLLEHLDIPKITPLRAVQLAALAP 690

Query: 608 ---------------------IAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNV 643
                                 AQ++ E++Q+P NI     L          +   ++  
Sbjct: 691 TLPLLAEAALDTLLQAGVSQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQLPSADRAH 750

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           ++ +  + +V TG L  + R  A   +  LGA +   +S+KT  ++ G++PGSKL+KA  
Sbjct: 751 TAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHA 810

Query: 704 LGVKIMNEEQFLFLLQQYNT 723
           L V I +E + L  L QY+ 
Sbjct: 811 LHVDIWDEARLLAFLGQYSA 830


>gi|312875390|ref|ZP_07735394.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b]
 gi|311089053|gb|EFQ47493.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b]
          Length = 672

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/716 (30%), Positives = 362/716 (50%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG +   L KV H  P LS+  +++ ++L +F  RI +      D    +
Sbjct: 59  -DPDSITQRVGGNIKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVGHVVD----Y 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKVGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD
Sbjct: 232 ET-ITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +
Sbjct: 291 DLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P
Sbjct: 351 VSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            +   AD++ L   Q         +  F D S+ NL ++I   + 
Sbjct: 453 PKIVRQLIALH----LVNDIADLYFLSAAQLA------KLDHFKDKSIQNLLNAIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +F LGI HVGA+ AR +AK +       +               L+++  +G  
Sbjct: 503 NSVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++V++++       ++ L               +    +  + K +V TG L    R
Sbjct: 553 IAESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L 
Sbjct: 613 ADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVVAKLN 668


>gi|325913348|ref|ZP_08175716.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B]
 gi|325477451|gb|EGC80595.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B]
          Length = 672

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/716 (30%), Positives = 360/716 (50%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLL-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +      D    +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVGHVVD----Y 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+G  GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGRIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD
Sbjct: 232 ET-ITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +
Sbjct: 291 DLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P
Sbjct: 351 VSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            +   AD++ L   Q         +  F D S+ NL ++I   + 
Sbjct: 453 PKIVRQLIALH----LVNDIADLYFLSAAQLA------KLDHFKDKSIQNLLNAIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +F LGI HVGA+ AR +AK +       +               L+++  +G  
Sbjct: 503 NSVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++V++++       ++ L               +    +  + K +V TG L    R
Sbjct: 553 IAESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L 
Sbjct: 613 ADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLN 668


>gi|84623945|ref|YP_451317.1| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|123752764|sp|Q2P334|DNLJ_XANOM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84367885|dbj|BAE69043.1| DNA ligase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 841

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/855 (29%), Positives = 403/855 (47%), Gaps = 174/855 (20%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +    L + I   D  YY  + P I D++YD L R    +   +P+L  +   + P  ++
Sbjct: 7   ERARELRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTA---DSPSMRV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +  S  KV HSIP LSL   ++  +++ F+ RI+R       N + F++EPK DG  
Sbjct: 64  GGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFRRMGSS--NPLEFSVEPKFDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++RYE GKFV    RGDG  GEDVS  IR I ++P  L  N +P I+EVRGEVY+ ++ 
Sbjct: 122 ISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGEVYMPRDG 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG----------KT 246
           F   N   +A G K  ANPRN A+G LR+L+      R L+FF +G+G          + 
Sbjct: 182 FSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVEQDLFEEI 241

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +  A     ML ++R  GFPV++ V       G+++YY  +   R  LP+DIDG+VYK+
Sbjct: 242 PQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKL 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ + Q+++G  +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G 
Sbjct: 302 DDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGV 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++TNATLHN D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q
Sbjct: 362 IVTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPATQ 410

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            +  P+ CP+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GL
Sbjct: 411 SWQMPTQCPVCGSEIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGL 464

Query: 487 GKQQLDFFFKSEDPAFSIRIP------------------ADIFTLQRRQQTSTTKIENIL 528
           G++ ++    S        +                      F  + R+  ++     + 
Sbjct: 465 GEKFIEVLVDSGVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQLE 524

Query: 529 G-------------------------------------FGDVSVTNLYDSINKRRNISLE 551
                                                        NL ++I   R+ +LE
Sbjct: 525 ATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSRDTTLE 584

Query: 552 RFIFSLGIRHV--------------------------------GAEIARSLAKYYLSYQN 579
           RF+F+LGI HV                                G E+ARSL  ++     
Sbjct: 585 RFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLG-HFFDQPG 643

Query: 580 FAQEINNIIAHNN------------------DDWLSLIRVPLVGDI-------------- 607
             + I++++A                      + L  + +P V  I              
Sbjct: 644 NQKAIDHLLARKVRIGDTHPPSPKLRGELRLANLLEDLEIPKVTPIRAAQIATAFGSIDA 703

Query: 608 -----------------IAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEI 647
                            +A+++  +   P N       +  L  +   +    +  +  +
Sbjct: 704 LRNGGPEPLVEAGVPQSVAESLATWLLVPANDTLAVNAQKKLSALLAMMPEAGEEKTGPL 763

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           + + +V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+
Sbjct: 764 DGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVE 823

Query: 708 IMNEEQFLFLLQQYN 722
           I +E + L  L ++ 
Sbjct: 824 IWDEARLLAFLGEHG 838


>gi|15618073|ref|NP_224357.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae CWL029]
 gi|15835684|ref|NP_300208.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae J138]
 gi|16752895|ref|NP_445166.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae AR39]
 gi|33241485|ref|NP_876426.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae TW-183]
 gi|7674003|sp|Q9Z934|DNLJ_CHLPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4376415|gb|AAD18302.1| DNA Ligase [Chlamydophila pneumoniae CWL029]
 gi|7189537|gb|AAF38439.1| DNA ligase [Chlamydophila pneumoniae AR39]
 gi|8978522|dbj|BAA98359.1| DNA ligase [Chlamydophila pneumoniae J138]
 gi|33235993|gb|AAP98083.1| DNA ligase (NAD+) [Chlamydophila pneumoniae TW-183]
          Length = 662

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/708 (32%), Positives = 376/708 (53%), Gaps = 50/708 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E ++    +L +E+  HD  YY   +P I D EYD   R+   I  + P+       
Sbjct: 1   MKEENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLW-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G   + +   V+H  P LS+   ++ E+L +F +R+ +           +T+E
Sbjct: 59  -SPSTRLGDRPSGTFSVVSHKEPMLSIANSYSKEELSEFFSRVEKSLGTSP----RYTVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + IRYE    V A  RG+G  GED+++ IR I ++P  L  + PE IEVRGEV
Sbjct: 114 LKIDGIAVAIRYEDRVLVQALSRGNGKQGEDITSNIRTIRSLPLRLPEDAPEFIEVRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           + S + F  +N++   + +  +ANPRNAA G L+ L+P ++  R L   ++ L    +  
Sbjct: 174 FFSYSTFQIINEKQQQLEKTIFANPRNAAGGTLKLLSPQEVAKRKLEISIYNLIAPGDN- 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE LQ+    GFPV+   R  +T   ++S    +++ R++LP +IDG V KVD  +
Sbjct: 233 -DSHYENLQRCLEWGFPVSGKPRLCSTPEEVISVLKTIETERASLPMEIDGAVIKVDSLA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG   +  RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+L++ 
Sbjct: 292 SQRVLGATGKHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVAKLTPVLLSGSLVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+L+NED I             +DIR+GD V V + GEVIPKVV +   +R   ++ ++ 
Sbjct: 352 ASLYNEDEIHR-----------KDIRIGDTVCVAKGGEVIPKVVRVCREKRPEGSEVWNM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P FCP+C S VVR+ +        + RC     C A  +E+++ FV R A NI+ LG + 
Sbjct: 401 PEFCPVCHSHVVREEDR------VSVRCVNP-ECVAGAIEKIRFFVGRGALNIDHLGVKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +   AD+F L             I G  + S  N+ +SI + +++ L
Sbjct: 454 ITKLFE----LGLVHTCADLFQLTTEDLM------QIPGIRERSARNILESIEQAKHVDL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RF+ +LGI  +G  +A  LA ++ +                  +  L+ +  +G+ +A 
Sbjct: 504 DRFLVALGIPLIGIGVATVLAGHFETLDRVISAT----------FEELLSLEGIGEKVAH 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           AI E++ +  ++  ++ +          H+    S    K  V TGTL+ + R  A+  +
Sbjct: 554 AIAEYFSDSTHLNEIKKMQDLGVCISPYHK--SGSTCFGKAFVITGTLEGMSRLDAETAI 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              G  V + +S++TD +++G+NPGSKLEKA++LGV I+++E F  L+
Sbjct: 612 RNCGGKVGSSVSKQTDYVVMGNNPGSKLEKARKLGVSILDQEAFTNLI 659


>gi|122879187|ref|YP_201049.6| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|166216280|sp|Q5H057|DNLJ_XANOR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 841

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/855 (29%), Positives = 403/855 (47%), Gaps = 174/855 (20%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +    L + I   D  YY  + P I D++YD L R    +   +P+L  +   + P  ++
Sbjct: 7   ERARELRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTA---DSPSMRV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +  S  KV HSIP LSL   ++  +++ F+ RI+R       N + F++EPK DG  
Sbjct: 64  GGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFRRMGSS--NPLEFSVEPKFDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++RYE GKFV    RGDG  GEDVS  IR I ++P  L  N +P I+EVRGEVY+ ++ 
Sbjct: 122 ISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGEVYMPRDG 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG----------KT 246
           F   N   +A G K  ANPRN A+G LR+L+      R L+FF +G+G          + 
Sbjct: 182 FSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVEQDLFEEI 241

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +  A     ML ++R  GFPV++ V       G+++YY  +   R  LP+DIDG+VYK+
Sbjct: 242 PQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKL 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ + Q+++G  +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G 
Sbjct: 302 DDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGV 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++TNATLHN D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q
Sbjct: 362 IVTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPATQ 410

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            +  P+ CP+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GL
Sbjct: 411 SWQMPTQCPVCGSEIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGL 464

Query: 487 GKQQLDFFFKSEDPAFSIRIP------------------ADIFTLQRRQQTSTTKIENIL 528
           G++ ++    S        +                      F  + R+  ++     + 
Sbjct: 465 GEKFIEVLVDSGVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQLE 524

Query: 529 G-------------------------------------FGDVSVTNLYDSINKRRNISLE 551
                                                        NL ++I   R+ +LE
Sbjct: 525 ATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSRDTTLE 584

Query: 552 RFIFSLGIRHV--------------------------------GAEIARSLAKYYLSYQN 579
           RF+F+LGI HV                                G E+ARSL  ++     
Sbjct: 585 RFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLG-HFFDQPG 643

Query: 580 FAQEINNIIAHNN------------------DDWLSLIRVPLVGDI-------------- 607
             + I++++A                      + L  + +P V  I              
Sbjct: 644 NQKAIDHLLARKVRIGDTHPPSPKLRGELRLANLLEDLEIPKVTPIRAAQIATAFGSIDA 703

Query: 608 -----------------IAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEI 647
                            +A+++  +   P N       +  L  +   +    +  +  +
Sbjct: 704 LRNGGPEPLVEAGVPQSVAESLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEEKTGPL 763

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           + + +V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+
Sbjct: 764 DGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVE 823

Query: 708 IMNEEQFLFLLQQYN 722
           I +E + L  L ++ 
Sbjct: 824 IWDEARLLAFLGEHG 838


>gi|315653834|ref|ZP_07906750.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195]
 gi|315488530|gb|EFU78176.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195]
          Length = 672

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/716 (30%), Positives = 361/716 (50%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +      D    +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVGHVVD----Y 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD
Sbjct: 232 ET-ITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +
Sbjct: 291 DLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P
Sbjct: 351 VSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            +   AD++ L   Q         +  F D S+ NL ++I   + 
Sbjct: 453 PKIVRQLIALH----LVNDIADLYFLSAAQLA------KLDHFKDKSIQNLLNAIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +F LGI HVGA+ AR +A+ +       +               L+++  +G  
Sbjct: 503 NSVELLLFGLGIDHVGAKAARLIAQKFHDLNTIREC----------SIADLMQIDTIGQA 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++V++++       ++ L               +    +  + K +V TG L    R
Sbjct: 553 IAESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L 
Sbjct: 613 ADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLN 668


>gi|167034833|ref|YP_001670064.1| NAD-dependent DNA ligase LigA [Pseudomonas putida GB-1]
 gi|190359275|sp|B0KPX3|DNLJ_PSEPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166861321|gb|ABY99728.1| DNA ligase, NAD-dependent [Pseudomonas putida GB-1]
          Length = 776

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/646 (34%), Positives = 347/646 (53%), Gaps = 48/646 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE   +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ +PK+DG
Sbjct: 60  RVGGEALSAFSQVRHEVPMLSLGNAFEETDLREFGRRVVEGLDQP--GAVDYSCKPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP  L     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE      
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  +R A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGVLEQLKAWGMPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNNLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPDDARPVEVPSAC 406

Query: 435 PICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+V R          +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           I  PAD++ L      +  +I  + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLVDE----GLIGSPADLYKL------AFEQIVGLEGFAEVSSKKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650
           A  I  F+++  N   +E LL              E   S+ +   
Sbjct: 567 AYEIHNFFEDEHNQKVIEQLLASGMKLQDEGELAAEFAASTTLAGM 612



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 16/205 (7%)

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           E +L  G         +     + +L   I  L I  VG   A  L     S +      
Sbjct: 584 EQLLASGMKLQDEGELAAEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLE------ 637

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK 641
             IIA +  D    +         A A+ EF+++  N      +EA L          +K
Sbjct: 638 -KIIAADGIDLRQALAA-----KQADAVREFFKDEANQKLARDIEAQLLAFGMHWSCEKK 691

Query: 642 NVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
                 +  +  V TGTL+++ R  A++ +  LGA V+  +S KT  ++ G   GSKL K
Sbjct: 692 VAEGLPLAGQTWVLTGTLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAK 751

Query: 701 AQQLGVKIMNEEQFLFLLQQYNTTL 725
           A +LGVK+++E+ F+  L +    +
Sbjct: 752 ASELGVKVLDEDAFVTFLAEQGIVV 776


>gi|71737941|ref|YP_274013.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123775130|sp|Q48KR2|DNLJ_PSE14 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71558494|gb|AAZ37705.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320329466|gb|EFW85458.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 787

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/812 (28%), Positives = 378/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV++ ++ AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFN----------------------------------IEGLGKQQLDFFFKSEDPAFSIR 505
           A +                                  +EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              N+ D++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           +          A  + DWL + +   + +  A+++ +F+ +  +     A+EA LK+   
Sbjct: 647 E----------AIISADWLDMRQT--LPEKQAKSVRDFFDDSAHAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++E+  L  L +    +
Sbjct: 755 AGSKLTKANELGLTVLDEDALLKRLTELGVAV 786


>gi|331013366|gb|EGH93422.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 787

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/812 (29%), Positives = 378/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEESDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVCGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFN----------------------------------IEGLGKQQLDFFFKSEDPAFSIR 505
           A +                                  +EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              N+ D++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRNVIDALLGECGLKLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           +          A  + DWL + +   + +  A+++ +F+ +  +     A+EA LK+   
Sbjct: 647 E----------AIISADWLDMRQT--LPEKQAKSVRDFFDDSAHAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++E+  L  L +   T+
Sbjct: 755 AGSKLTKANELGLTVLDEDALLKRLTELGVTV 786


>gi|330986172|gb|EGH84275.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 787

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/812 (29%), Positives = 379/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEESDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV++ ++ AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSHELKLANGVEDCLDYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFN----------------------------------IEGLGKQQLDFFFKSEDPAFSIR 505
           A +                                  +EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              N+ D++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           +          A  + DWL + +   + +  A+++ +F+ +  +     A+EA LK+   
Sbjct: 647 E----------AIISADWLDMRQT--LPEKQAKSVRDFFDDSAHAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++E+  L  L +   T+
Sbjct: 755 AGSKLTKANELGLTVLDEDALLKRLTELGVTV 786


>gi|269303032|gb|ACZ33132.1| DNA ligase, NAD-dependent [Chlamydophila pneumoniae LPCoLN]
          Length = 662

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/708 (32%), Positives = 375/708 (52%), Gaps = 50/708 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E ++    +L +E+  HD  YY   +P I D EYD   R+   I  + P+       
Sbjct: 1   MKEENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLW-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G   + +   V+H  P LS+   ++ E+L +F +R+ +           +T+E
Sbjct: 59  -SPSTRLGDRPSGTFSVVSHKEPMLSIANSYSKEELSEFFSRVEKSLGTSP----RYTVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + IRYE    V A  RG+G  GED++  IR I ++P  L  + PE IEVRGEV
Sbjct: 114 LKIDGIAVAIRYEDRVLVQALSRGNGKQGEDITLNIRTIRSLPLRLPEDAPEFIEVRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           + S + F  +N++   + +  +ANPRNAA G L+ L+P ++  R L   ++ L    +  
Sbjct: 174 FFSYSTFQTINEKQQQLEKTIFANPRNAAGGTLKLLSPQEVAKRKLEISIYNLIAPGDN- 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE LQ+    GFPV+   R  +T   ++S    +++ R++LP +IDG V KVD  +
Sbjct: 233 -DSHYENLQRCLEWGFPVSGKPRLCSTPEEVISVLKTIETERASLPMEIDGAVIKVDSLA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG   +  RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+L++ 
Sbjct: 292 SQRVLGATGKHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVAKLTPVLLSGSLVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+L+NED I             +DIR+GD V V + GEVIPKVV +   +R   ++ ++ 
Sbjct: 352 ASLYNEDEIHR-----------KDIRIGDTVCVAKGGEVIPKVVRVCREKRPEGSEVWNM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P FCP+C S VVR+ +        + RC     C A  +E+++ FV R A NI+ LG + 
Sbjct: 401 PEFCPVCHSHVVREEDR------VSVRCVNP-ECVAGAIEKIRFFVGRGALNIDHLGVKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +   AD+F L             I G  + S  N+ +SI + +++ L
Sbjct: 454 ITKLFE----LGLVHTCADLFQLTTEDLM------QIPGIRERSARNILESIEQAKHVDL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RF+ +LGI  +G  +A  LA ++ +                  +  L+ +  VG+ +A 
Sbjct: 504 DRFLVALGIPLIGIGVATVLAGHFETLDRVISAT----------FEELLSLEGVGEKVAH 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           AI E++ +  ++  ++ +          H+    S    K  V TGTL+ + R  A+  +
Sbjct: 554 AIAEYFSDSTHLNEIKKMQDLGVCISPYHK--SGSTCFGKAFVITGTLEGMSRLDAETAI 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              G  V + +S++TD +++G+NPGSKLEKA++LGV I+++E F  L+
Sbjct: 612 RNCGGKVGSSVSKQTDYLVMGNNPGSKLEKARKLGVSILDQEAFTNLI 659


>gi|330981936|gb|EGH80039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 787

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/812 (28%), Positives = 378/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AF----------------------------------NIEGLGKQQLDFFFKSEDPAFSIR 505
           A                                   ++EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              ++ D++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           +          A  + DWL + +   + +  A+++ +F+ +  N     A+EA LK+   
Sbjct: 647 E----------AIISADWLDMRQA--LPEKQAKSVRDFFDDSANAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++E+  L  L +    +
Sbjct: 755 AGSKLTKANELGLTVLDEDALLKRLAELGVAV 786


>gi|329920507|ref|ZP_08277239.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G]
 gi|328936183|gb|EGG32636.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G]
          Length = 672

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/716 (30%), Positives = 361/716 (50%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +      D    +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVGHVVD----Y 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN +    G   +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMDKATFAKLNFKRDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD
Sbjct: 232 ET-ITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +
Sbjct: 291 DLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P
Sbjct: 351 VSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            +   AD++ L   Q         +  F D S+ NL ++I   + 
Sbjct: 453 PKIVRQLIALH----LVNDIADLYFLSAAQLA------KLDHFKDKSIQNLLNAIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +F LGI HVGA+ AR +AK +       +               L+++  +G  
Sbjct: 503 NSVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++V++++       ++ L               +    +  + K +V TG L    R
Sbjct: 553 IAESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L 
Sbjct: 613 ADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVVAKLN 668


>gi|300691610|ref|YP_003752605.1| DNA ligase [Ralstonia solanacearum PSI07]
 gi|299078670|emb|CBJ51328.1| DNA ligase [Ralstonia solanacearum PSI07]
          Length = 813

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/807 (29%), Positives = 382/807 (47%), Gaps = 141/807 (17%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           + +   YY   +P + D+EYD L R  +A+    P+L   + P+ P  ++GG +      
Sbjct: 25  NRYAHEYYVLDQPSVPDAEYDRLYRELEALEADHPEL---KTPDSPTLRVGGAVLPEFAP 81

Query: 89  VTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRYEK 145
           V H +P LS+    +   +    F   + R     + D S+ +  E K DG  I +RYEK
Sbjct: 82  VRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDPSVEYAAELKFDGLAINLRYEK 141

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISKNDFLALN 202
           G  V AA RGDG +GEDV+  IR I  IP  L      +P+++EVRGEVY+ ++DF  LN
Sbjct: 142 GFLVQAATRGDGTTGEDVTQNIRTIRQIPLGLRPVNGAVPDVLEVRGEVYMRRDDFERLN 201

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI--FAKGQYEMLQ 259
                 G K + NPRN A+G +R+L+P     R L+FF +GLG+ +           +L 
Sbjct: 202 ARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWAEMPGTHAGVLD 261

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +   GFPV++         G+V ++ ++++ R +LP+DIDG+VYKV+  +LQ++LG R 
Sbjct: 262 ALVAFGFPVSHERAAVTGGEGLVRFHADIRAKRDSLPFDIDGVVYKVNSLALQRELGFRT 321

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R PRW ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNATLHNED +
Sbjct: 322 REPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNATLHNEDEV 381

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD--------------- 424
           +            +D+RVGD V+V+RAG+VIP+VV +++  R  +               
Sbjct: 382 RR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPK 430

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             PF  P  CP+C S VVR+         A  RC+GGL CSAQ+ E ++HF  R   +IE
Sbjct: 431 YPPFELPKSCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIRHFAGRRMMDIE 484

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL-----------GFGDV 533
           GLG++ +D   + E     +   AD++ L         +  +                  
Sbjct: 485 GLGERYIDNLVELE----YVHGIADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATK 540

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHV------------------------------- 562
              NL   I   +   L RF+F+LGIRHV                               
Sbjct: 541 WAENLLAGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLTLPD 600

Query: 563 -GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW-------------------------- 595
            GA +A ++A ++   +N  Q ++ ++A                                
Sbjct: 601 VGATVAEAIADFFAEPKN-QQALDALLAAGVTPQGEHPPGAKLRDQLEPAELYAALGVPK 659

Query: 596 ---------------------LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
                                    ++  +   ++ +++++ +   +   +  L    + 
Sbjct: 660 LTATRSKQLATLVPALAQLATADAAQLEGLPADVSASLLDWLEADDHRARLAQLEALRAE 719

Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
            +       + E  +  K +V TGTL  + R  A+  +   GA VS  +S+KTD ++ G 
Sbjct: 720 LLAAMPAGTAEEGALSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSKKTDYLVAGV 779

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GSKL +AQ+LGV++++E   L LLQ
Sbjct: 780 EAGSKLARAQELGVRVLDEAGMLALLQ 806


>gi|66045063|ref|YP_234904.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           B728a]
 gi|75502608|sp|Q4ZVF6|DNLJ_PSEU2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|63255770|gb|AAY36866.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. syringae B728a]
          Length = 787

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/812 (28%), Positives = 378/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLTLTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AF----------------------------------NIEGLGKQQLDFFFKSEDPAFSIR 505
           A                                   ++EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTYLPDVGLEVAYEIRSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              ++ D++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           +          A  + DWL + +   + +  A+++ +F+ +  N     A+EA LK+   
Sbjct: 647 E----------AIISADWLDMRQA--LPEKQAKSVRDFFDDSANAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++E+  L  L +    +
Sbjct: 755 AGSKLTKANELGLTVLDEDALLKRLIELGVAV 786


>gi|296123087|ref|YP_003630865.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776]
 gi|296015427|gb|ADG68666.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776]
          Length = 707

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/728 (31%), Positives = 368/728 (50%), Gaps = 59/728 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S +QAR  L  L QEI  HD  YY  ++  I D EYD L  R   +  AFP+L  +   +
Sbjct: 18  SADQARHLLDKLRQEIRRHDRLYYVLAQNEISDLEYDRLMARLLEVEAAFPELTTA---D 74

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLE 131
            P  K+GGE      +V HS+P LS++ +++   L +F  ++ R   +      + +  E
Sbjct: 75  SPSQKVGGEPIEGFVQVAHSVPMLSIDNVYDESGLLEFGQKVSRRASEVGWKGPMEWLAE 134

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----------N 180
            K+DG  +++ YE+GK + A  RGDG  G+DV+   + I  +P  L             N
Sbjct: 135 FKVDGVALSLIYEEGKLIRAVTRGDGRVGDDVTHNAKTIKGVPLFLEDGSSKKSLFAESN 194

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP ++EVRGE YI   DF  +    +  G +P+ N RNA +G L+ L+P     R L FF
Sbjct: 195 IPRLLEVRGEAYIGNQDFAKVRAHQLERGEEPFKNSRNATAGSLKLLDPKLCAQRQLRFF 254

Query: 240 VHGLGKTSEIFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
            H LG   E  A   K   + L+    +G P         +F   V+    M    STL 
Sbjct: 255 AHSLGAIDEQEATRFKTHADYLELFYQVGLPTVPMTACHPSFEAAVAASPTMMEALSTLD 314

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           +++DGLV+KV+  +L+ +LG  ++SPRW++++K+   +A+T++L+I +Q+G+TG+LTPVA
Sbjct: 315 FEVDGLVFKVNNLALRAELGMTSKSPRWIVAYKWERYEAATKVLNITVQVGKTGVLTPVA 374

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            LEPV I G  ++ ++LHN D I+ L            + VGD V+V++AG++IP +V +
Sbjct: 375 DLEPVEIAGTTVSRSSLHNRDEIERL-----------GLGVGDTVIVEKAGKIIPHIVRV 423

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
             + R  +  P+ FP  CP C + V +D      +     RC   + C A+  E L++F 
Sbjct: 424 EEHLRPTNTAPYRFPETCPECSTIVEQD------EGGVYIRCPN-INCPARFRESLRYFA 476

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR A +IEGLG + ++    S      ++  +D++ L  ++                SV 
Sbjct: 477 SRQAMDIEGLGTKLVEQLVSSR----LVQSISDLYRLVDKRAELLELERLGE----KSVD 528

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           +L   +   R   L R + +L IRHVG   A+ LA+ + S    + +    ++       
Sbjct: 529 SLLAGLEASRQQPLWRLLTALNIRHVGQRTAQILAERFGSMDRLSAQTIEELSAT----- 583

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENKKL 652
                P VG++IAQ++  F+        +E L        + S  +        +  K  
Sbjct: 584 -----PEVGEVIAQSVHHFFHTEYGSKLIEELKNLGLNLGTESEQKQIAATEGVLSGKTF 638

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R + +E +   G   ++ +S+KT  ++ G+N GSKL KAQ LGV ++NE 
Sbjct: 639 VVTGTLPSMGREEIEELIRLHGGHAASSVSKKTSFVVAGENAGSKLTKAQSLGVPVINEA 698

Query: 713 QFLFLLQQ 720
           +F+ L+ +
Sbjct: 699 EFMKLIGK 706


>gi|116511279|ref|YP_808495.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
           SK11]
 gi|122940331|sp|Q031P9|DNLJ_LACLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116106933|gb|ABJ72073.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. cremoris SK11]
          Length = 686

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/735 (30%), Positives = 354/735 (48%), Gaps = 83/735 (11%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
               ++     +++     YY   +P + DSEYD L      +    P L R++ P    
Sbjct: 2   NIESKIKEFTDQLNQFAYEYYTLDEPSVEDSEYDRLYHELVKLEQENPQLVRADSPTHWT 61

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
              GG +     K  H     SL  +++ E+L  +  R+ +     +  +  +  E KID
Sbjct: 62  ---GGVILDGFVKFRHPYNLYSLGDVFSREELALWEERVRK-----EIVNPEYICELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YE G  V AA RGDG +GE+++  ++ I  +P  L   I   I VRGE Y+ +
Sbjct: 114 GLSLSLYYENGLLVTAATRGDGTTGENITENVKRIKDVPLKLKEAI--DIVVRGEAYLPR 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            +F  LN E    G  P+ANPRNAA+G LR+L+   +  R L  F++   + S      Q
Sbjct: 172 QNFAKLNAERELAGAAPFANPRNAAAGTLRQLDTKIVAKRGLATFLY--QEASPATNDTQ 229

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E+L+    LGF VN   + A     I  +  E   +R  LPYDIDG+V KV+  + Q++
Sbjct: 230 EEVLEYFEELGFQVNPERKFARNLDEIWEFIEEATRLRDELPYDIDGVVIKVNNLAEQEE 289

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++PRW I++KF  +QA T +L +D  +GRTG++TP A + PV +    +  ATLH
Sbjct: 290 LGFTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLH 349

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER--------HPDAQ 426
           N DYI+            +DIR  D+V++ +AG++IPKV  +++ +R           A 
Sbjct: 350 NVDYIQ-----------EKDIRNHDKVMIYKAGDIIPKVGKVLLEKRKPAKHLRKTHRAN 398

Query: 427 PFSF------------------------PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
            + +                        P+ CP C S ++   +        A RC   L
Sbjct: 399 KYVWTRFGRRSVEKGLVFSKREDNRVKIPTQCPECDSDLIHFEDE------VALRCVNPL 452

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522
            C AQ  E+L HF SRDA NI GLG   +   F  +     +   AD++ L      +  
Sbjct: 453 -CPAQIREKLIHFASRDAMNIVGLGPSVISQLFDKK----LVTDVADLYQLTVEDLLTLD 507

Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
           K++      +     +  +I + R  S E+ +F LGIRHVG + A+ L + + + +  +Q
Sbjct: 508 KVK------ETLAQKIVSAIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSQ 561

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
                I+           +P +G +IA A+V +++       ++ L             N
Sbjct: 562 ASEEEIS----------EIPSLGGVIATAVVSYFETAGAKTLLDELENAGLNFAYLGAVN 611

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
           V   +  K +V TG L  ++R +A+E +  LGA VS  +S+KTD+++ G+  GSKL KAQ
Sbjct: 612 VEGILSGKTVVLTGKLTTLKRKEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQ 671

Query: 703 QLGVKIMNEEQFLFL 717
            LG++I +E+  L L
Sbjct: 672 DLGIEIWSEQDLLDL 686


>gi|330960233|gb|EGH60493.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 787

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/812 (29%), Positives = 379/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   DLR+F  R+         +      ++ 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGAGSTVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPEVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L  ++  G PV+  ++ AN     ++YY ++   R +L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLNALKKWGMPVSRELKLANGVEECLAYYKDIGERRLSLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNSLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R   A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVAERRPQTA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S+V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KPVEVPQTCPVCGSQVERTQLVKRSKGKETISEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AF----------------------------------NIEGLGKQQLDFFFKSEDPAFSIR 505
           A                                   ++EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSKQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDIGLEVAHEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              N+ D++                    + +LE  I  L I  VG   A+ LA+ + + 
Sbjct: 587 HNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLAEKFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA---VEALLKEVSP 634
           +          A  + DWL + +   + +  A+++ +F+    N      +EA LK+   
Sbjct: 647 E----------AVISADWLDMRQA--LPEKQAKSVRDFFDANANAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TGTL+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKAVEGLPLAGQTWVLTGTLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++EE  L  L +    +
Sbjct: 755 AGSKLTKANELGLTVLDEEALLKRLTELGVAV 786


>gi|88658391|ref|YP_507122.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas]
 gi|123763773|sp|Q2GHG1|DNLJ_EHRCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|88599848|gb|ABD45317.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas]
          Length = 676

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/703 (38%), Positives = 417/703 (59%), Gaps = 39/703 (5%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A+ EL  L ++I +HD  YY    P I D+EYD L R+ + I +AFP L +S D    
Sbjct: 5   EKAKLELDKLNKQIQHHDVLYYVQDNPEISDAEYDELCRKRNLILNAFPKLTQSND---Y 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            N IG   +    KV H     SL+  +N +D+ KFITR  +F    D+ SI  + E KI
Sbjct: 62  QNNIGSSPDTKFAKVKHEEKMFSLDNAFNQQDVEKFITRTKKFLNINDNQSIPLSCELKI 121

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG   ++ Y+KG+   A+ RG+G+ GE+++  ++ I  +P ++  N P+++EVRGE+YI 
Sbjct: 122 DGLSFSVIYKKGEIYQASTRGNGYFGENITTNVKTIKNLPHIIH-NAPDLLEVRGEIYID 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           + DF+ LN          +ANPRNAA+G +R+L+      R L +F++ +  T+ +    
Sbjct: 181 RCDFIQLN-----NDGNNFANPRNAAAGSVRQLDHNITAQRKLKYFMYTIVNTACL---T 232

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q E+L +++  GF VN      +      ++YN++ + RS + YDIDG++YKV++   Q 
Sbjct: 233 QEELLYQLKIWGFCVNEHTITTDNIEEAFNFYNQVYNNRSNINYDIDGIIYKVNDIKSQH 292

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  ++SPRW I++KF   +A T+L  I IQIGRTG+LTP+A L P+NIGG ++T A+L
Sbjct: 293 ILGTTSKSPRWAIAYKFPAAEAKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVTRASL 352

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN++ I+            +DIR GD V+VKRAG+VIP++VD+  N R  +   F FP+ 
Sbjct: 353 HNKNEIER-----------KDIREGDYVIVKRAGDVIPQIVDVDKNLRTQELTKFVFPTT 401

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S V +          A+  CTG L C  Q LE++KHFVS+DAFNI G GK+QL F
Sbjct: 402 CPSCGSSVYQAKQE------ASIYCTGELFCKDQILEKIKHFVSKDAFNIIGFGKKQLLF 455

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I    DIFTL+ +   S  K+E++ G+G+ S++NL+ +IN  + ISLE F
Sbjct: 456 FYEQR----LITNITDIFTLEEKISNSDVKLESLHGWGEKSMSNLFSAINNSKVISLENF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR +G  IA+ LA ++ SY+ +  E+  +    N+D+   + +  +G     ++ 
Sbjct: 512 IFALGIRFIGKYIAKILANHFSSYETWYNEMLKL--AQNEDY--SLNIQQIGSKTIGSLK 567

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F+  P N+  +  L+K ++ +  +    + S I  K +VFTG L  + R +A+      
Sbjct: 568 MFFSQPHNLNMINDLVKHLTITDTQSSSYL-SLIHGKIIVFTGELSSMSRSEAKIRSETA 626

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           GA VS+ LS+ TD +I G+NPGSK +KAQ L V+I+ E+ +L 
Sbjct: 627 GAKVSSSLSKNTDFLIAGNNPGSKYKKAQSLNVQILTEDLWLQ 669


>gi|148546832|ref|YP_001266934.1| NAD-dependent DNA ligase LigA [Pseudomonas putida F1]
 gi|190359274|sp|A5W0U0|DNLJ_PSEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148510890|gb|ABQ77750.1| DNA ligase, NAD-dependent [Pseudomonas putida F1]
          Length = 776

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/646 (34%), Positives = 346/646 (53%), Gaps = 48/646 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP  L     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE      
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSESIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  ++ A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQDARPVEVPSEC 406

Query: 435 PICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+V R          +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           I  PAD++ LQ        ++  + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQ------FEQVVGLEGFAEVSTQKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650
           A  I  F+++  N   ++ LL              E   S+ +   
Sbjct: 567 AYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELAAEFAASTTLAGM 612



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 16/189 (8%)

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +     + +L   I  L I  VG   A  L     S        + IIA +  D    + 
Sbjct: 600 AAEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSL-------DKIIAADGIDLRQALA 652

Query: 601 VPLVGDIIAQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSS-EIENKKLVFTG 656
                   A A+ EF+++  N      +EA L          +K      +  +  V TG
Sbjct: 653 A-----KQADAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTG 707

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL+++ R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+ F+ 
Sbjct: 708 TLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVT 767

Query: 717 LLQQYNTTL 725
            L +    +
Sbjct: 768 FLAEQGIAV 776


>gi|325274411|ref|ZP_08140498.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51]
 gi|324100446|gb|EGB98205.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51]
          Length = 776

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/646 (33%), Positives = 343/646 (53%), Gaps = 48/646 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAALSAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             +++ Y  G  V  A RGDG +GED+SA +R +  IP  L     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGLLVQGATRGDGTTGEDISANVRTVRNIPLKLHGEGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ S       
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSASIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  ++ A      + YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLDYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P + PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPDDARPVAVPSEC 406

Query: 435 PICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+V R          +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           I  PAD++ LQ        ++  + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQ------FEQVVGLEGFAEVSTRKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIENK 650
           A  I  F+++  N   ++      +          E   S+ +   
Sbjct: 567 AYEIHNFFEDEHNQKVIQQLLDSGMHLQDEGELAAEFAASTSLAGM 612



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 16/189 (8%)

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +     + SL   I  L I  VG   A  L     S        + IIA +  D    + 
Sbjct: 600 AAEFAASTSLAGMIAKLDIASVGPTGAEKLVAKLDSL-------DKIIAADGIDLRQALA 652

Query: 601 VPLVGDIIAQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSS-EIENKKLVFTG 656
                   A A+ EF+++  N      +EA L          +K      +  +  V TG
Sbjct: 653 A-----KQADAVREFFKDEANQQLARAIEAQLLAFGMHWTSEKKVAEGLPLAGQTWVLTG 707

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL+++ R  A++ +  LGA V+  +S +T  ++ G   GSKL KA +LGVK+++EE F+ 
Sbjct: 708 TLERMSRDVAKDKLESLGAKVAGSVSGRTQCVVAGPGAGSKLAKASELGVKVLDEEAFVA 767

Query: 717 LLQQYNTTL 725
            L     T+
Sbjct: 768 FLAGQGITI 776


>gi|89898194|ref|YP_515304.1| NAD-dependent DNA ligase LigA [Chlamydophila felis Fe/C-56]
 gi|123735917|sp|Q254X9|DNLJ_CHLFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89331566|dbj|BAE81159.1| DNA ligase [Chlamydophila felis Fe/C-56]
          Length = 662

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/702 (33%), Positives = 372/702 (52%), Gaps = 50/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++  +L ++I   D  YY    PII D +YD   ++  +I    P+         P  +
Sbjct: 7   REQYLALCKDIEEDDYRYYVLHDPIISDYDYDMKMQKLLSIEAQHPEWRVLW---SPSMR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  ++ S   VTHS P LS+   + +E+L  F +R+ +           +TLE KIDG 
Sbjct: 64  LGDRISGSFPVVTHSHPMLSIANAYTLEELNDFFSRVEKTLGYTP----TYTLELKIDGI 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYE+   V A  RG+G  GED++  IR I ++P  L    PE +EVRGEV+ ++  
Sbjct: 120 AVAIRYEQRVLVQALSRGNGRQGEDITTNIRTIRSLPLRLPKEAPEFLEVRGEVFFTRAT 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N       +  +ANPRNAA G L+ L+  +   R L   ++  G  +E   +  Y+
Sbjct: 180 FEQINSIQRQSEKPEFANPRNAAGGTLKLLSAKEAAQRNLELSIY--GAWAEENTESHYD 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L   +  GFPV    RQ  +   +V   +E+  IR  LP +IDG+V KVD    QK LG
Sbjct: 238 NLMLCQKWGFPVFGRPRQYKSVEEVVKALHEIAKIRDQLPMEIDGVVIKVDNTEDQKVLG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+  RW +++K+A +Q  T L DI IQ+GRTG+LTPVA+L PV + G+ ++ A+L+NE
Sbjct: 298 MTAKHYRWALAYKYAPEQGETILEDILIQVGRTGVLTPVAKLRPVFLSGSKVSRASLYNE 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           + I+            +DIR+GD V V++ GE+IPKVV + + +R    +P+  P +CP+
Sbjct: 358 EEIER-----------KDIRIGDTVYVEKGGEIIPKVVGVCLEKRPEGTKPWVMPEYCPV 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  RV R+ +        + RCT   +CSA  +E+++ FV R+A +IE LG++ +   F 
Sbjct: 407 CHERVSRESDK------VSVRCTNS-SCSAGTIEKIRFFVGREALDIEHLGEKVITKLFD 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I    DIF +             + GF D S+ N+  SI K ++  LERFI +
Sbjct: 460 ----LGLIHRRCDIFQITEEDLL------QVPGFKDKSIKNVLKSIEKAKSAPLERFIAA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A +LA+++LS            A  +     L  +  +G  +A++IV+++
Sbjct: 510 LGIPYVGIGGANALAQHFLSLD----------AVMSASLEELKVIDGIGSKVAESIVDYF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N+  ++ +L      +       S+  + K  V TG+L+K+ R +A+  +   G  
Sbjct: 560 HQSDNVEEIQKMLSLGVNVLPY--SRASASCQGKTFVITGSLEKMTRSEAEASIRNCGGK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V + +S+  + ++VG +PGSKL+KAQ+L + I+NE   L +L
Sbjct: 618 VGSSVSKSINYLVVGKDPGSKLKKAQELQIPILNESDLLKIL 659


>gi|148259769|ref|YP_001233896.1| DNA ligase, NAD-dependent [Acidiphilium cryptum JF-5]
 gi|166215383|sp|A5FWJ5|DNLJ_ACICJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146401450|gb|ABQ29977.1| DNA ligase, NAD-dependent [Acidiphilium cryptum JF-5]
          Length = 682

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/705 (37%), Positives = 403/705 (57%), Gaps = 40/705 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               +  L+ L + ++  D  YY+   PI+ D+ YDAL+R  +++  A PDLA + D   
Sbjct: 11  PADPKARLAELVERLAAADAAYYRDDAPIMDDAAYDALRREAESLRAAHPDLAAALD--- 67

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G   + +  KV H +P LSL+ ++   D  +F   I RF        + F  EPK
Sbjct: 68  ---QVGAAPSGAFGKVRHRLPMLSLDNVFEPADFVEFCASIRRFLGLGA-APLAFVAEPK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++ YE  +FV  A RGDG  GEDV+  +R +  +P  L  + P+ IE+RGEVY+
Sbjct: 124 IDGLSISLTYENRRFVRGATRGDGTEGEDVTENLRTLRELPATLPDDAPDFIEIRGEVYM 183

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           +K DF+ LN          +ANPRNAA+G LR+L+P    +R L+ F +  G  S+   +
Sbjct: 184 TKTDFITLNQGQARQ----FANPRNAAAGSLRQLDPAVTASRRLSLFAYARGAASQAVGE 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++ L  +R  GFPVN    +  +  G   +   +   R+ L YDIDG+VYK+D+ +LQ
Sbjct: 240 THWDYLAILRRWGFPVNPLAERV-SEAGAEPFQRSIGERRAGLDYDIDGVVYKIDDLALQ 298

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   R+PRW ++ KF  ++A T LL IDIQ+GRTG LTP ARL+PVN+GG L+++AT
Sbjct: 299 ERLGFAGRAPRWAVAWKFPAERALTTLLGIDIQVGRTGALTPRARLDPVNVGGVLVSHAT 358

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +D+R+GD V ++RAG+VIP+++  +   R  D+ PF FP 
Sbjct: 359 LHNEDEIAR-----------KDVRIGDTVELQRAGDVIPQILRALPERRPADSVPFVFPD 407

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C +  +R             RCTGGL+C AQ +ERL HF SR AF+IEG+G++ + 
Sbjct: 408 HCPVCGALAIRPAGE------VVRRCTGGLSCPAQVVERLIHFCSRLAFDIEGMGEKTVQ 461

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         +  PADIFTL+ R+      I  + G+G+VS   L  +I+ RR ISL R
Sbjct: 462 EFH----GLGWLESPADIFTLRDREAA----IAALEGWGEVSARKLIAAIDARRRISLAR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGIR +G + A+ LA++Y SY  + +++       +D  L L  +  +G  IA+ +
Sbjct: 514 FIYALGIRRIGEQNAKLLARHYSSYAVWRRQMEEAGVIGSDARLELGSISGIGPSIAEEL 573

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             F+  P N   ++ L+  ++  I          +  K +VFTGTL+ + R +A+     
Sbjct: 574 AGFFAEPHNRDLLDRLVPMLT--IEDEVAAAGGALAGKTIVFTGTLESLTRPEAKARAEA 631

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           LGA V+  +S+KTD ++VG + GSK  KA  LGV +++E +F  L
Sbjct: 632 LGARVTESVSKKTDFVVVGADAGSKAAKAASLGVTVLSEAEFRSL 676


>gi|94986686|ref|YP_594619.1| NAD-dependent DNA ligase [Lawsonia intracellularis PHE/MN1-00]
 gi|123385090|sp|Q1MRS8|DNLJ_LAWIP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94730935|emb|CAJ54298.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 682

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/718 (34%), Positives = 387/718 (53%), Gaps = 52/718 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P  +L  ++ ++ +  L + I++H+  YY    P I DSEYD   +    + + FP L  
Sbjct: 6   PQYSLPSKKEKQRVRELRKFINHHNYLYYTLDDPEISDSEYDKAFQELLTLENTFPSLKT 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +   N P  K+G  +   L +  H     SL+ +++ ++   F+ R+     +       
Sbjct: 66  N---NSPTQKVGNNILKKLEEQPHRQRMYSLDNVFSNDEWEGFLKRLANALPEV---PFS 119

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--LNIPEII 185
           F  +PK+DG  + + YEKG+   A  RGDG  GE V+  +R I  IP+ L   +N PE++
Sbjct: 120 FWCDPKMDGLALELIYEKGQLTSALTRGDGDIGEVVTEAVRTISNIPKRLKHSINAPELL 179

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           E+RGEV IS+ DF  LN E     +K +ANPRNAASG +R+L+PT   +R L F  +G+G
Sbjct: 180 EIRGEVVISRADFKKLNKEQEKKKKKLFANPRNAASGSVRQLDPTITASRPLRFLAYGIG 239

Query: 245 K--TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +   S +     +E++  ++  GF      +   +   + SYY  +++ R +L Y+IDG+
Sbjct: 240 EIQPSSLKWNTYHELMSYLKEYGFETPPKGKLCISSTEVQSYYTRLQAQRYSLRYEIDGI 299

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K+D+   Q++LG  +R+PR+ I+ KF   Q  TRLL I IQ+GRTG+LTPVA LEP+N
Sbjct: 300 VMKLDDIQSQEKLGYTSRAPRFAIAWKFPATQVQTRLLQIHIQVGRTGVLTPVAELEPIN 359

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GGA I+ ATLHNED IK            +DIR GD V+V+RAG+VIP++V  I+++R 
Sbjct: 360 VGGATISRATLHNEDEIKN-----------KDIRPGDMVIVQRAGDVIPEIVSPILSDRS 408

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             ++PF FP  CP+C  +V R  N        A RC   L+C A +L+ + +FVS+   N
Sbjct: 409 AKSKPFVFPKICPVCHEKVYRINNE------VAWRCIN-LSCPAIRLQSIIYFVSKSGLN 461

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+G+G++ ++    S      I+ PAD+FTL      +  ++                ++
Sbjct: 462 IQGIGQRLIELLVTSGC----IKTPADLFTLTTADLLTYKRMGA------KLAAKTIQAL 511

Query: 543 NKRRNI-SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +  +   SL R I +LGIRHVG + AR LA  ++             A ++     L ++
Sbjct: 512 SLAKQTMSLHRLICALGIRHVGEQTARILASSFIDLD----------ALSSASLEDLQQL 561

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
             +G  +A +I  F++N  NI  +       + P    ++         KKL+FTGTL++
Sbjct: 562 SEIGPEVASSIQAFFKNKANIQMINQFREMNIWPIQQVNDTTTKGFFTGKKLLFTGTLER 621

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R + +    + GA+V   +S K D +I G NPGSKL KAQ+L + I++E  FL  L
Sbjct: 622 P-RAEMKRLAEEAGAIVMTGISHKLDYVIAGKNPGSKLNKAQELHISILDEPTFLQKL 678


>gi|11513386|pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
           Filiformis
 gi|11513387|pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
           Filiformis
          Length = 667

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/719 (32%), Positives = 378/719 (52%), Gaps = 59/719 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+AR+ ++ L   I YH+  YY  + P I D+EYD L R    +   FP+    + P
Sbjct: 1   MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEF---KSP 57

Query: 72  NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G      +   V H     SL+  +  E++  F        +++ +    +T+
Sbjct: 58  DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAF----EERLEREAEAPSLYTV 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G +   +  GDG  GE+V+  +  IPTIPR L   +P+ +EVRGE
Sbjct: 114 EHKVDGLSV-LYYEEGVWSTGS--GDGEVGEEVTQNLLTIPTIPRRLK-GVPDRLEVRGE 169

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--- 246
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P     R L    + LG     
Sbjct: 170 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGL 229

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E   K QYE+L  ++  GFPV +   +A    G+   Y    + R  LP++ DG+V K+
Sbjct: 230 EESGLKSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKL 289

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +L  +LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV I G+
Sbjct: 290 DDLTLWGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGS 349

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R    +
Sbjct: 350 EVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGKER 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +IEGL
Sbjct: 399 PIRWPEACPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIEGL 449

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++   +       +R  AD++ L++       ++      G+ S  NL   I + +
Sbjct: 450 GEKLIERLLEK----GLVRDVADLYHLRKEDLLGLERM------GEKSAQNLLRQIEESK 499

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  LER +++LG+  VG  +AR+LA+ + +     +     +    +             
Sbjct: 500 HRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGE---------- 549

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           + A+AI+E  ++P     V  L +       + E  VS  +     V TG L +  R + 
Sbjct: 550 LTARAILETLKDPAFRDLVRRLKEAGVSMESKEE--VSDLLSGLTFVLTGELSRP-REEV 606

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV ++ EE+F   L++    +
Sbjct: 607 KALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGAPV 665


>gi|313497885|gb|ADR59251.1| LigA [Pseudomonas putida BIRD-1]
          Length = 776

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/646 (34%), Positives = 346/646 (53%), Gaps = 48/646 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAAMAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP  L     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE      
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSESIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  ++ A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQDARPVEVPSEC 406

Query: 435 PICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+V R          +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           I  PAD++ LQ        ++  + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQ------FEQVVGLEGFAEVSTQKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650
           A  I  F+++  N   ++ LL              E   S+ +   
Sbjct: 567 AYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELAAEFAASTTLAGM 612



 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 16/189 (8%)

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +     + +L   I  L I  VG   A  L     S        + IIA +  D    + 
Sbjct: 600 AAEFAASTTLAGMIAKLDIASVGPTGAEKLVSKLDSL-------DKIIAADGIDLRQALA 652

Query: 601 VPLVGDIIAQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSS-EIENKKLVFTG 656
                   A A+ EF+++  N      +EA L          +K      +  +  V TG
Sbjct: 653 A-----KQADAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTG 707

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL+++ R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+ F+ 
Sbjct: 708 TLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVT 767

Query: 717 LLQQYNTTL 725
            L +    +
Sbjct: 768 FLAEQGIAV 776


>gi|170722763|ref|YP_001750451.1| NAD-dependent DNA ligase LigA [Pseudomonas putida W619]
 gi|254781396|sp|B1JC06|DNLJ_PSEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169760766|gb|ACA74082.1| DNA ligase, NAD-dependent [Pseudomonas putida W619]
          Length = 776

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/647 (34%), Positives = 345/647 (53%), Gaps = 48/647 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A   + +L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P 
Sbjct: 2   NAESRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+D
Sbjct: 59  QRVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQP--GAVDYSCEPKLD 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  +++ Y  G+ V  A RGDG +GED+SA +R +  IP  L     P ++EVRGEV++S
Sbjct: 117 GLAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVFMS 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ S    + 
Sbjct: 177 KAGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSASIGES 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              +L++++  G P++  +R A      ++YY ++   R++LPY+IDG+V+KV+  + Q+
Sbjct: 237 HIGILEQLKAWGLPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLASQR 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATL
Sbjct: 297 ELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P   PS 
Sbjct: 357 HNMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPVQVPSA 405

Query: 434 CPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           CP+C S+V R          +T    A +RC G LAC AQ  + + H+VSR A +I+GLG
Sbjct: 406 CPVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++           I  PAD++ LQ  Q           GF +VS   L D+I   + 
Sbjct: 466 EKSVEQLVDE----GLIGSPADLYKLQFDQIVGLE------GFAEVSSKKLLDAIEASKR 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P +G  
Sbjct: 516 PSLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLE 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650
           +A  I  F+++  N   +E LL              E   S+ +   
Sbjct: 566 VAYEIHNFFEDEHNCKVIEQLLGCGMQLQDEGELAAEFAASTTLAGM 612



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 16/205 (7%)

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           E +LG G         +     + +L   I  L I  VG   A  L     S        
Sbjct: 584 EQLLGCGMQLQDEGELAAEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSL------- 636

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEK 641
           + IIA +  D    +         A+A+ EF+++  N      +EA L          +K
Sbjct: 637 DKIIAADGIDLRQALAA-----KQAEAVREFFKDEANQKLARDIEAQLLAFGMHWNSEKK 691

Query: 642 NVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
                 +  +  V TGTL+++ R  A+E +  LGA V+  +S KT  ++ G   GSKL K
Sbjct: 692 VAEGLPLAGQTWVLTGTLERMSRDIAKEKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAK 751

Query: 701 AQQLGVKIMNEEQFLFLLQQYNTTL 725
           A +LGVK+++E+ F+  L +    +
Sbjct: 752 ASELGVKVLDEDAFVVFLDEQGIAI 776


>gi|322652148|gb|EFY48510.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
          Length = 571

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/606 (34%), Positives = 337/606 (55%), Gaps = 45/606 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H IP LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558

Query: 611 AIVEFY 616
            +  F 
Sbjct: 559 HVFNFL 564


>gi|259501108|ref|ZP_05744010.1| DNA ligase [Lactobacillus iners DSM 13335]
 gi|302190444|ref|ZP_07266698.1| DNA ligase [Lactobacillus iners AB-1]
 gi|259167802|gb|EEW52297.1| DNA ligase [Lactobacillus iners DSM 13335]
          Length = 672

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/716 (30%), Positives = 361/716 (50%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +      D    +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVGHVVD----Y 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+      R L+ +++      
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTYIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD
Sbjct: 232 ET-ITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +
Sbjct: 291 DLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P
Sbjct: 351 VSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRLQASLP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            +   AD++ L   Q         +  F D S+ NL ++I   + 
Sbjct: 453 PKIVRQLIALH----LVNDIADLYFLSAAQLA------KLDHFKDKSIQNLLNAIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +F LGI HVGA+ AR +A+ +       +               L+++  +G  
Sbjct: 503 NSVELLLFGLGIDHVGAKAARLIAQKFHDLNTIRKC----------SIADLMQIDTIGQT 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++V++++       ++ L               +    +  + K +V TG L    R
Sbjct: 553 IAESMVKYFEQQSVKELMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L 
Sbjct: 613 ADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLN 668


>gi|284042834|ref|YP_003393174.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
 gi|283947055|gb|ADB49799.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
          Length = 684

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/719 (31%), Positives = 360/719 (50%), Gaps = 50/719 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +  + L +E++YH   YY    P I D  YDAL     A+  A P+L     P+ P  +
Sbjct: 7   AQRAAVLRRELAYHGHRYYDLDDPEIGDDAYDALLDELRALEAAHPELL---TPDSPTQR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFTLEPKID 135
           +GG +   L KV H    LSL    + ++L  ++ R+     ++  +D    + +EPK+D
Sbjct: 64  VGGAVVSELRKVRHRRRMLSLANARSEQELLAWVERMRAHLAREGIEDPRFEYVVEPKVD 123

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YE G  +    RGDG  GEDV+  IR I  IP+ +    P  +EVRGEVY+S 
Sbjct: 124 GLAMSLHYENGTLIRGVTRGDGEIGEDVTHNIRTIEQIPQQI-DGAPAWLEVRGEVYMSL 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN      GR  + NPRN+A+G +R+L+      R L+ + +G+G+T  I     
Sbjct: 183 ADFEALNLRRAEEGRSTFMNPRNSAAGTIRQLDSRLAAERPLSMWCYGIGETEGISFSTH 242

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ +R  GFPVN+ +R+  T   +V+     +  R +L ++IDG+V KVD+  LQ++
Sbjct: 243 WESLQWLRAHGFPVNDEIRRIRTAEKVVARCERWQERRGSLDFEIDGVVVKVDDVELQRR 302

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   R PRW I+ KF    A T+L D+   +G+ G L P A LEPV++GG  +  ATLH
Sbjct: 303 LGVVGRDPRWAIAWKFPPTTAVTQLHDVMWNVGKFGTLHPFAVLEPVHVGGVTVKLATLH 362

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPS 432
           NE+ +             +D+R GD V+V RAG+VIP+V+    +  ER   A     P+
Sbjct: 363 NEEDLAR-----------KDVRPGDDVIVLRAGDVIPQVLSPAPHVAERSDRAPVPRPPA 411

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C +  V+             +C     C  ++ + L+H+VSR A +++G+G++Q+ 
Sbjct: 412 RCPVCDTPTVKGEG-------VFTKCPN-RDCPGRRWQLLQHYVSRGAMDVDGIGEKQVS 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +       +R P D + L   Q     +      FG+VS  N  ++I   +     R
Sbjct: 464 VLMEH----GLLRTPGDYYRLSAEQLMQLDR------FGEVSARNAVEAIAASKERPFGR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGI  VG+   RSLA+ + +           IA            P +G I+ + I
Sbjct: 514 VLFGLGIEGVGSVTGRSLAQRFRTIDALTAASAEEIAAT----------PGIGPIVGRLI 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            +  ++      ++ L                  + +K +V TGTL  + R +A E +  
Sbjct: 564 HDQLRDEHLRAVIDDLRAHGVRMEEDGPPPGEGPLADKAIVLTGTLPTLTREEATERILA 623

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
            G  V++ +SR+TD ++ G+  G+KLEKA++L V +++E+    LL+         +DD
Sbjct: 624 AGGRVTSSVSRRTDYVVAGERAGTKLEKAERLRVPVLDEDGLEALLRGAGDAG--AEDD 680


>gi|26990965|ref|NP_746390.1| NAD-dependent DNA ligase LigA [Pseudomonas putida KT2440]
 gi|81439923|sp|Q88F25|DNLJ_PSEPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24985989|gb|AAN69854.1|AE016624_5 DNA ligase, NAD-dependent [Pseudomonas putida KT2440]
          Length = 776

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/646 (34%), Positives = 345/646 (53%), Gaps = 48/646 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP  L     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE      
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  ++ A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R   A+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPVEVPSAC 406

Query: 435 PICQSRVV------RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+V       R    +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTRLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           I  PAD++ LQ        ++  + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQ------FEQVVGLEGFAEVSTQKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  ++ +          +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650
           A  I  F+++  N   ++ LL              E   S+ +   
Sbjct: 567 AYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELAAEFAASTTLAGM 612



 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 16/189 (8%)

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +     + +L   I  L I  VG   A  L     S        + IIA +  D    + 
Sbjct: 600 AAEFAASTTLAGMIAKLDIASVGPTGAEKLVARLDSL-------DKIIAADGIDLRQALA 652

Query: 601 VPLVGDIIAQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSS-EIENKKLVFTG 656
                   A A+ EF+++  N      +EA L          +K      +  +  V TG
Sbjct: 653 A-----KQADAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTG 707

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL+++ R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+ F+ 
Sbjct: 708 TLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVT 767

Query: 717 LLQQYNTTL 725
            L +    +
Sbjct: 768 FLAEQGIAV 776


>gi|104780921|ref|YP_607419.1| NAD-dependent DNA ligase LigA [Pseudomonas entomophila L48]
 gi|122985912|sp|Q1ICK0|DNLJ_PSEE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|95109908|emb|CAK14613.1| NAD-dependent DNA ligase [Pseudomonas entomophila L48]
          Length = 784

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/660 (33%), Positives = 354/660 (53%), Gaps = 51/660 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A   + +L  E+  H+  YY   +P + D+EYD L     A+    P L  +   + P 
Sbjct: 2   NAESRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPQLVTA---DSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
            ++GG    +  +V H +P LSL   +  +DLR F  R+         +      ++ ++
Sbjct: 59  QRVGGAALAAFSQVRHEVPMLSLGNAFEEDDLRDFDRRVVEGLDLPGGDLFAAQAAVDYS 118

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            EPK+DG  +++ Y  G+ V  A RGDG +GED+S  +R +  IP  L     P ++EVR
Sbjct: 119 CEPKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISTNVRTVRNIPLKLQGEGWPAVLEVR 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+SK  F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ S
Sbjct: 179 GEVYMSKAGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVS 238

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E F      +L+K++  G P++  +R A      ++YY ++ + R+ LPY+IDG+V+KV+
Sbjct: 239 EPFGDSHIGILEKLKTWGLPISRELRHAAGIEECLAYYRDIGARRNDLPYEIDGVVFKVN 298

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             + Q++LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G +
Sbjct: 299 SLASQRELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVM 358

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I  L            +R+GD V+++RAG+VIP+V+ ++++ R  +A+P
Sbjct: 359 VSNATLHNMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLDRRPENARP 407

Query: 428 FSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              P+ CP+C S+V R          +T    A +RC G L+C+AQ  + + H+VSR A 
Sbjct: 408 VEVPTECPVCGSQVERTQLVKRSKGKETISEGAVYRCVGRLSCAAQLKQAIIHYVSRRAM 467

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+GLG++ ++           IR PAD++ L+        ++  + GF +VS   L ++
Sbjct: 468 DIDGLGEKSVEQLVDE----GLIRSPADLYKLE------FEQVVVLEGFAEVSSRKLLEA 517

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   +  SL RFI++LGI  VG E A+ LA+   S       +  ++ +          +
Sbjct: 518 IEASKRPSLARFIYALGIPDVGEETAKVLARSLGSLARVQVALPQVLTY----------L 567

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           P +G  +A  I  F+++  N   +  LL        + E  + +E         G L K+
Sbjct: 568 PDIGLEVAHEIHNFFEDTHNREVIAQLLASG--MQLQEEGELGAEFAAST-TLAGMLAKL 624



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 16/187 (8%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
               + +L   +  L I  VG   A  L     +        + IIA +  D    +   
Sbjct: 610 EFAASTTLAGMLAKLDIPSVGPTGAEKLVDKLGTL-------DKIIAADGIDLRQALN-- 660

Query: 603 LVGDIIAQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL 658
                 A+ + EF+++  N     A+EA L +        +++     +  +  V TGTL
Sbjct: 661 ---TKQAEGVREFFRDEANQLLARAIEAQLLDFGMHWSCEKRSAEGLPLAGQTWVLTGTL 717

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E + +LGA V+  +S KT  ++ G   GSKL KA +LGVK+++EEQF+  +
Sbjct: 718 ERMSRDVAKEQLERLGAKVAGSVSGKTHCVVAGPGAGSKLAKANELGVKVLDEEQFVAFM 777

Query: 719 QQYNTTL 725
            +   TL
Sbjct: 778 AEQGITL 784


>gi|34499358|ref|NP_903573.1| DNA ligase [Chromobacterium violaceum ATCC 12472]
 gi|81654398|sp|Q7NR81|DNLJ_CHRVO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|34105208|gb|AAQ61564.1| DNA ligase [Chromobacterium violaceum ATCC 12472]
          Length = 821

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/831 (29%), Positives = 392/831 (47%), Gaps = 151/831 (18%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++  + R   + L + ++ +   YY    P + D+EYD L R   A+  A P+LA S  
Sbjct: 18  PMTANELRA--AELRELLNRYGHEYYVLDAPTVPDAEYDRLFRELQALEEAHPELAVS-- 73

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQK 120
            + P  ++GG        V H++P LSL   ++            +L +F  R+ +    
Sbjct: 74  -DSPTRRVGGAPLDEFVSVVHAVPMLSLSNAFSDMQLTDPAERHSELIQFDERVRKGL-- 130

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
            D   + +  EPK DG  I++ YE G    AA RGDG +GE V+  +R I  IP  L   
Sbjct: 131 -DAAEVEYATEPKFDGLAISLLYENGVLTRAATRGDGVAGEQVTENVRTIRAIPLKLDGA 189

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNF 238
           N P ++EVRGEV + K DF  LN + IA G K +ANPRNAA+G LR+L+      R L+F
Sbjct: 190 NPPALLEVRGEVLMLKRDFERLNADQIARGDKTFANPRNAAAGSLRQLDSRITAQRRLSF 249

Query: 239 FVHGLGKTSEI-FAKGQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTL 295
           F + + +     +       +  ++ LGFPV  ++     +   G+  YY  + + R+ L
Sbjct: 250 FAYSIAQVGGADWPATHAGEMAWLKTLGFPVVMDSLRPVVSGAAGLAGYYEAVLTARAGL 309

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           P++IDG+VYKV+    Q+ LG  +R+PRW I+HKF  ++A T +  I+ Q+GRTG +TPV
Sbjct: 310 PFEIDGVVYKVNRRDQQEALGFVSRAPRWAIAHKFPAEEALTCVEAIEEQVGRTGAITPV 369

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           ARL+PV +GG  +TNATLHNED ++            +D+RVGD V+V+RAG+VIP+VV 
Sbjct: 370 ARLKPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVVVRRAGDVIPEVVS 418

Query: 416 IIVNERHPDAQP---------------FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG 460
           +++ +R                     +  P+ CP+C S VVR+         A  RC+G
Sbjct: 419 VVLAQRPMQPAEGGDLFSAGEEPRYPAYRLPTACPVCGSHVVREEGE------AIARCSG 472

Query: 461 GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS 520
           GL+C AQ+ + ++HF  R   +I+GLG++ +D   +       ++  AD++ L+      
Sbjct: 473 GLSCRAQRSQAIQHFAGRRMMDIDGLGERYIDKLVE----YGYVQGVADLYRLKLEDLLE 528

Query: 521 TTKIENIL-----------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
             +  +                     NL ++I+  R   L R +F+LGIRHVG   A++
Sbjct: 529 MKRRADEDEGVTPETVKAGKVASKWAENLIEAIDASRAPPLARLLFALGIRHVGESTAKT 588

Query: 570 LAKY-------------------------------YLSYQNFAQEINNIIAH-------- 590
           LA +                               + +  N  + ++ ++A         
Sbjct: 589 LADWLGTMALIRRCPAALFAALPDIGGVVADSLADFFAEDNNEKALDALLAEVKPADEHA 648

Query: 591 ---------NNDDWLSLIRVPLVGDI------------------------------IAQA 611
                    ++   L+ + +P + ++                              +  A
Sbjct: 649 PSPKLRERLDDASLLARLAIPRLTEVRSQQLAAQRSLAWLGQSERRALLALELPAEVVNA 708

Query: 612 IVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           + ++   P    A+     L  E+  S+    +  +  +E K LV TGTL  + R +A+ 
Sbjct: 709 LADWLDEPGRRAALASLAGLRDEILASLPAAAEAAALPLEGKTLVLTGTLPTLSRDQAKA 768

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   G  VS  +S+KT  ++ G+  G KL KAQ+LGV I++E     LL 
Sbjct: 769 LIEAAGGKVSGSVSKKTHYVVAGEEAGGKLAKAQELGVAILDEAGLQALLA 819


>gi|254453419|ref|ZP_05066856.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 238]
 gi|198267825|gb|EDY92095.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 238]
          Length = 661

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/670 (41%), Positives = 398/670 (59%), Gaps = 54/670 (8%)

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL   +  +D+ +F   + +F    +  ++ FT EPKIDG  +++RYE GK V AA R
Sbjct: 1   MLSLGNAFTDDDVSEFDKSVRKFLGL-ETGALAFTAEPKIDGLSLSLRYEFGKLVQAATR 59

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+V+A  R I  +P++L  + P+I+EVRGEVY+S  DF ALN      G K +A
Sbjct: 60  GDGAVGENVTANARTIHDVPQLL-DDAPDILEVRGEVYMSHADFEALNARQSKAGAKTFA 118

Query: 215 NPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+ +   +R L FF +  G+ S   A  Q   + +++ LGF  N   +
Sbjct: 119 NPRNAAAGSLRQLDVSVTKSRPLKFFAYAWGEVSAPLADTQSGAIARLKTLGFQTNPLTQ 178

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
                  ++++Y +++S R+TL YDIDG+VYKVDE +LQ +LG R+ +PRW I+HKF  +
Sbjct: 179 ICTGPSDMIAHYRDIESQRATLGYDIDGVVYKVDELALQARLGFRSTTPRWAIAHKFPAE 238

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
            A T L  IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G    G  +RGG+
Sbjct: 239 LAWTTLDAIDIQVGRTGALSPVARLSPVTVGGVVVSNATLHNEDYIAGRGNKGDDIRGGK 298

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIRVGD V + RAG+VIPKV D+ + +R  +A PF FP+ CP C S  VR+      +  
Sbjct: 299 DIRVGDWVQIYRAGDVIPKVADVDLTKRPVEATPFDFPTTCPKCGSDAVRE------EGD 352

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
              RCTGGL C AQ +E+LKHFVSR AF+I+GLG +Q++ F+  +    +I+ PADIFTL
Sbjct: 353 VVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAKQVEAFYNDDQ--LAIKEPADIFTL 410

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           Q R   S TK+ N  G+GD SV  L+ +I+++R ISL R IF+LGIRHVG   A+ LA++
Sbjct: 411 QARDLDSFTKLANRDGWGDTSVKKLWQAIDEKREISLARLIFALGIRHVGEVTAQDLARH 470

Query: 574 YLSYQNFAQEIN----NIIAHNNDD----------------------------------- 594
           Y +++  A+ +       IAH   D                                   
Sbjct: 471 YGTWEVLAENVKLGRPAAIAHRAADEAEADERFIADRDGRRPRVSEARKLAIANAGLSRT 530

Query: 595 ----WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
               W  LI    +G  +A +  +   N     A+EAL++++   I    +  +S +  K
Sbjct: 531 ATKAWAFLIDADGIGATVALSFSDALSNAEESKAIEALIQQLDTIIAPQTQASNSPVAGK 590

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +VFTGTL+K+ R +A+     LGA VS  +S KTD++I G   GSK +KA   G++ ++
Sbjct: 591 TVVFTGTLEKMTRAEAKARAESLGAKVSGSVSAKTDLLIAGLGAGSKAKKAADFGIETLS 650

Query: 711 EEQFLFLLQQ 720
           E+ +L L + 
Sbjct: 651 EDGWLALTKD 660


>gi|269119219|ref|YP_003307396.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386]
 gi|268613097|gb|ACZ07465.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386]
          Length = 669

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/712 (30%), Positives = 367/712 (51%), Gaps = 47/712 (6%)

Query: 14  IEQ--ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +EQ   +K    L+  I  +++ YY+ ++ ++ D EYD L +  ++I   +P+L  +   
Sbjct: 1   MEQTGIKKRYEELKDLIRKYNEHYYEKNESLVTDYEYDMLLKEMESIEKEYPELKDTV-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+GG  +    KV H +P LSL   +NI ++  F  RI +     +D  I + LE
Sbjct: 59  -SVTEKVGGRASGKFSKVVHKVPMLSLSNTYNIGEIEDFDKRIKKVIG--EDQKIEYVLE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I+I+YE G+ V    RGDG  GEDV+  I  I +IP++L    P  +EVRGE+
Sbjct: 116 LKLDGLSISIQYENGRLVRGITRGDGEIGEDVTENIMQIDSIPQILKE--PVTLEVRGEI 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
            +  ++F  +N      G   +ANPRNAASG +R+L  + +  R L+ +++ L       
Sbjct: 174 VLPISNFNKVNKMREEAGEDVFANPRNAASGTIRQLESSIVKDRGLDCYLYFLVNAQNYN 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + ++ +  LGF           F  +     +    R  L ++ DGLV K+DEF+
Sbjct: 234 LQKHSDSIKYLEKLGFKTTKVFEIYKDFSLLEKAIEKWHVERERLDFETDGLVIKLDEFA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
               LG   +SPRW I++KF  ++A T+LLDI  Q+GRTG++TPVA LEPV + G+++  
Sbjct: 294 YYSALGSTTKSPRWAIAYKFPAEKAKTKLLDITFQVGRTGVITPVAELEPVELSGSVVRR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D IK            +DI++GD V +++A E+IP+V++ +++ER    +    
Sbjct: 354 ASLHNFDEIKR-----------KDIKIGDFVYIEKAAEIIPQVIEPVISERTGSEKEIEM 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C  ++++  +        A +C    AC      ++++FVSRDA NI GLG++ 
Sbjct: 403 PESCPSCGHKLIKIEDQ------VAIKCINP-ACPEIIKRKIEYFVSRDAMNITGLGEKI 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F +       I+   DI++L   +     ++E +   G  SV NL +SI + +    
Sbjct: 456 IEKFIELGK----IKDIVDIYSLHEYR----EELEKLEKMGKKSVDNLLNSIEESKKREY 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + ++SLGI  VG   A  LAK +L+  N            + +   L+ V  +GD +A+
Sbjct: 508 SKVLYSLGIPFVGKFTANLLAKEFLNIDNLK----------SKETEDLLEVKGIGDKVAK 557

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  F  +  N   +  L +              + I+ K  + TG L+K  R + ++ +
Sbjct: 558 SVNMFLNDENNWNLISKLKETGLQFEEEEVFIEDNPIKGKTFLATGKLEKYTRDEIKDII 617

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF-LFLLQQY 721
              G    + +S+  + +I G+  GSKL+KA  LGV ++NEEQF    L++ 
Sbjct: 618 EAKGGKYLSGVSKNLNYLIAGEKAGSKLKKANDLGVIVLNEEQFEKEFLEEE 669


>gi|309803834|ref|ZP_07697919.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d]
 gi|312870780|ref|ZP_07730886.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a]
 gi|312873110|ref|ZP_07733169.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1]
 gi|308164068|gb|EFO66330.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d]
 gi|311091343|gb|EFQ49728.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1]
 gi|311093656|gb|EFQ51994.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a]
          Length = 672

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/716 (30%), Positives = 361/716 (50%), Gaps = 53/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +      D    +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVGHVVD----Y 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+      R L+ F++      
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD
Sbjct: 232 ET-ITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVD 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G +
Sbjct: 291 DLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTV 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P
Sbjct: 351 VSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG
Sbjct: 400 YEIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +            +   AD++ L   Q         +  F D S+ NL ++I   + 
Sbjct: 453 PKIVRQLIALH----LVNDIADLYFLSAAQLA------KLDHFKDKSIQNLLNAIENSKQ 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +F LGI HVGA+ AR +A+ +       +               L+++  +G  
Sbjct: 503 NSVELLLFGLGIDHVGAKAARLIAQKFHDLNTIREC----------SIADLMQIDTIGQA 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IA+++V++++       ++ L               +    +  + K +V TG L    R
Sbjct: 553 IAESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKEKNVVLTGKLAHYSR 612

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L 
Sbjct: 613 ADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVVAKLN 668


>gi|289626390|ref|ZP_06459344.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330866315|gb|EGH01024.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 787

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/812 (29%), Positives = 375/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  YY   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYYVLDEPSIPDVEYDRLFHELKALEVENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  +  AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELNLANGVEECLDYYRDIGERRLTLNYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFN----------------------------------IEGLGKQQLDFFFKSEDPAFSIR 505
           A +                                  +EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              N+ D++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           +          A  + DWL +     + +  A+++ +F+ +  +     A+EA LK+   
Sbjct: 647 E----------AIISADWLDMR--HTLPEKQAKSVRDFFDDSAHAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLETLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++E+  L  L +    +
Sbjct: 755 AGSKLTKANELGLTVLDEDALLKRLTELGVAV 786


>gi|256832938|ref|YP_003161665.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603]
 gi|256686469|gb|ACV09362.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603]
          Length = 798

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/764 (28%), Positives = 364/764 (47%), Gaps = 89/764 (11%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +++   L + I  +   YY   +  + D++YDAL     A+        +      P  +
Sbjct: 54  QEQWERLARLIQRYQFEYYIQGESSVPDADYDALLAELVAVEEQLGGAPQG----SPTQR 109

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG  +    +V H  P LSL+  +++E+L+ +  R++    +    ++ +  E KIDG 
Sbjct: 110 VGGTFSTEFEEVDHRQPMLSLDNAFSLEELQAWADRVH---GELSGGAVSYLCEVKIDGL 166

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVRGEVYIS 194
            +++ YE+G+ V A  RGDG +GEDV+  ++ I +IP+ L  +    P+++E+RGEV++ 
Sbjct: 167 AVSLTYERGELVRALTRGDGQTGEDVTLNVQTIRSIPQRLGGDPAFHPQVVEIRGEVFMK 226

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS-----E 248
             DF  LND     G K +ANPRNAA+G LR+ +P     R L+ + HG+G         
Sbjct: 227 VADFADLNDSQARQGGKTFANPRNAAAGSLRQKDPRVTAQRRLSMYAHGIGALEWDGQSP 286

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +    Q ++    +  G PV++     +    +       +  R ++ +++DG V KVDE
Sbjct: 287 VDLARQSDVYALYQQWGIPVSSHNSVEHDLDAVTRKIEYYRENRHSIEHELDGFVIKVDE 346

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + QKQLG  +R+PRW I+ K+  ++ +TRLLDI + +GRTG +TP   +EPV + G+ +
Sbjct: 347 VAAQKQLGSTSRAPRWAIAFKYPPEEVTTRLLDIQVNVGRTGRVTPFGMMEPVLVAGSTV 406

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN   ++            +D+R GD V+V++AG+VIP+++  + + R      +
Sbjct: 407 SMATLHNFHEVRR-----------KDVRPGDTVIVRKAGDVIPEILGAVESLRPDGLPQW 455

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C + +      +  +     RC    +C +Q  ER+    SR AF+IE LG 
Sbjct: 456 EPPTHCPSCGTEI-----REAKEGDKDLRCPNAQSCPSQLRERVFALASRGAFDIEALGW 510

Query: 489 QQLDFFFKSED------------------------PAFSI--------RIPADIFTLQRR 516
           +        E                           F +        R   D+   + R
Sbjct: 511 ESAVALCDPESSRPVGPDAPQLDGPPLTPVLTSEAHIFDLADENSSLTRSLKDVVVWRER 570

Query: 517 QQTSTTKIENILGFGDVSVT-----------NLYDSINKRRNISLERFIFSLGIRHVGAE 565
           +  S T+ E +  F   +              L++ + K ++  L R + +L IRHVG  
Sbjct: 571 KLKSGTRWELVPYFYTRATASKSSVPTATTVKLFEEVQKAKSQPLWRVLVALSIRHVGPT 630

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ----NPRN 621
            AR+LA  + S         + +A           V  VG  IA+++VE+++    N   
Sbjct: 631 AARALATEFGSMDRIRAASVSELAA----------VDGVGSTIAESVVEWFREVDGNQWR 680

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              V A  K         +++V   +E   +V TG L+   R   +E +   G   S  +
Sbjct: 681 PAIVAAWAKAGVSMEDIPDESVQRTLEGITVVVTGGLENFTRDGVKEAIVARGGKASGSV 740

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           S+KTD ++VG N GSK  KA++LG++I+NEE+F  LL      +
Sbjct: 741 SKKTDFVVVGANAGSKETKARELGLRILNEEEFTRLLAGGPDAV 784


>gi|46447394|ref|YP_008759.1| NAD-dependent DNA ligase LigA [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81626502|sp|Q6MAB5|DNLJ_PARUW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46401035|emb|CAF24484.1| probable DNA ligase [Candidatus Protochlamydia amoebophila UWE25]
          Length = 665

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/703 (33%), Positives = 388/703 (55%), Gaps = 46/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K+   L  EI +H+  YY   +PII D E+DAL ++ + I  + P+         P  +
Sbjct: 4   QKDYEKLCHEIWHHNKLYYIEHQPIISDEEFDALLKKLEEIERSHPEWITEF---SPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +   +      V H  P LSL   ++ E++  FI R+ +   K+    + F++E K+DG 
Sbjct: 61  VNESLTSGFKTVAHRTPMLSLANTYSKEEIEDFIKRLQKLVGKR---QVEFSVELKMDGI 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            IT  YE+G F     RG+G  G+D++  +R I  +P  L   N+P+ +E+RGEV++ + 
Sbjct: 118 AITAIYEQGIFKRGITRGNGKRGDDITTNMRMIENLPLQLSGENLPDFLEIRGEVFMPRQ 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            FL LN++ +  G   +ANPRNAA+G L+ L+P  +  R L    +GL + S    K Q 
Sbjct: 178 VFLQLNEQKLQDGEVLWANPRNAAAGSLKLLDPKMVAERRLAVVFYGLAEDSSASIKKQA 237

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+    R +G P             I  +  E++S+R+ LPYDIDG+V K+++F  QK+L
Sbjct: 238 EVPSFFRSIGLPALEHHAYCQNIEQIWKFAEEIRSLRTILPYDIDGIVIKLNDFKDQKRL 297

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   +SPRW I++KFA +QA TR++DI +QIGRTG+LTPVA LEP+ + G+ I  A+L+N
Sbjct: 298 GVTGKSPRWAIAYKFAAEQAKTRIIDITVQIGRTGVLTPVAELEPIFLSGSTIARASLYN 357

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ++ ++            +DIR+GD V +++ G+VIPKV+++ +++R   +QP+  P +CP
Sbjct: 358 QEEVQR-----------KDIRIGDLVTIEKGGDVIPKVLNVELSQRPLHSQPWQMPLYCP 406

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C ++V+  +         A RC    +C+ QQ+ +L +FV + A +I+ +G++ +   F
Sbjct: 407 SCGTQVINIIGE------VAVRCPNEDSCTEQQIRKLIYFVGKQAMDIKHMGEKIVIQLF 460

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I +P+DIF L   Q      I  +  F   ++ NL  SI + +++SLERFI 
Sbjct: 461 QK----GFIHLPSDIFALTEGQ------ISQLTNFKTKAIQNLMRSIEESKHVSLERFIM 510

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +L I+++G   A  LA    + +   Q     +          I++  VG  +AQA+VE 
Sbjct: 511 ALEIKYIGIGTAELLAARAGTIETLMQLNEEDL----------IKIEGVGGKVAQAVVEH 560

Query: 616 YQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +QNP++   V   L   V P     +   +   + K  V TG+L+   R  A   + + G
Sbjct: 561 FQNPKHRQEVYRLLELGVCPQSKTVQIFTNHAFQGKIFVLTGSLEHYTRQSAASLIKERG 620

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             VS  +SRKT+ ++ G  PGSKL+KA+ LG+ ++NE++F+ L
Sbjct: 621 GKVSDSVSRKTNYVVAGAEPGSKLDKARTLGIPVLNEKEFISL 663


>gi|260577534|ref|ZP_05845474.1| DNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258604338|gb|EEW17575.1| DNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 688

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/718 (28%), Positives = 344/718 (47%), Gaps = 57/718 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +     L  ++ +H   YY Y +P I D+++DAL +    +  A P++        P  +
Sbjct: 4   QSRWQELADQVRHHRQLYY-YGEPEISDADFDALLQELKDLEQAHPEVVTGA---SPTEE 59

Query: 78  IGGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +      S     V H    LSL+ +++ E L  ++ R           +  +  E KID
Sbjct: 60  VAPAPPTSSPFRNVDHREQMLSLDNVFDTEQLAGWLDRT---------PAKTYLTELKID 110

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEV 191
           G  I + Y  G+   A  RGDG +GED++   R +  IP  L       +PE++E+RGEV
Sbjct: 111 GASINLLYIDGQLELALTRGDGTTGEDITHNARTLDDIPDTLHGTDEFPVPELVEIRGEV 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           +I   DF A+N +  A G K +ANPRNAA+G +R+ N  D   R L    HG+G      
Sbjct: 171 FIDVEDFAAMNAQRQAEGLKMFANPRNAAAGAMRQKNSADTAKRPLKLICHGIGAREGFS 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++  + +   G PV+   +Q ++   +        + R    +++DGLV KVD   
Sbjct: 231 PASQHDAYRAIAAWGLPVSPYTKQVHSAKEVQQQVEYWGNHRHDAAHEMDGLVVKVDSLE 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  +R+PRW I++K+  ++A T L +I + IGRTG  TP A +EP  + G+ ++ 
Sbjct: 291 EQLELGHTSRAPRWAIAYKYPPEEAMTTLHNIRVGIGRTGRATPYAVMEPKYVAGSTVSM 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN                 + + +GD + +++AGEVIP+V+  + ++R    +PF F
Sbjct: 351 ATLHNPTE-----------AHRKGVMLGDTITIRKAGEVIPEVLGPVEDKRTGAERPFLF 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            +FCP C +R+       +    A  RC     C  Q   RL +  SR AF+I+ LG++ 
Sbjct: 400 STFCPECGTRL-----APSKVGDADWRCPNTQYCPGQLHTRLTYLASRKAFDIDALGEKG 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                     +  +   +++F L       T+      G  + S   L + +   +   L
Sbjct: 455 AYDLI----HSGVLADESELFDLSAEDLEKTSSYATKAGKLNKSGETLLEKLQSAKEADL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LAK++ S ++ A      +A           +  V + IA+
Sbjct: 511 WRVLVALSIRHVGPTAAKALAKHFESVEDIASASVEEMAG----------IDGVAETIAE 560

Query: 611 AIVEFYQNPRNICAVEAL-------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +I +++    +   V+          +E   + G  +   S+ +E   +V TG+L+   R
Sbjct: 561 SISDWFTVDWHRRIVDRWAAAGVRMHQEAGEASGEADGVDSALLEGLTIVVTGSLEDFDR 620

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             A+E +   G   +  +S+KTD ++ G+  GSKL+KA+ LGV +++E  F  LL+  
Sbjct: 621 TAAKEAIEARGGKAAGSVSKKTDFLVAGEKAGSKLKKAEDLGVPVLDEAGFKELLESG 678


>gi|70729275|ref|YP_259012.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf-5]
 gi|123734866|sp|Q4KFH1|DNLJ_PSEF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|68343574|gb|AAY91180.1| DNA ligase, NAD-dependent [Pseudomonas fluorescens Pf-5]
          Length = 788

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/626 (34%), Positives = 330/626 (52%), Gaps = 48/626 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A   +  L  E+  H+  Y+   +P I D+EYD L R   A+    P+L  S   + 
Sbjct: 1   MTAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALEAEHPELVTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H IP LSL   +   D+R+F  R+         +      ++ 
Sbjct: 58  PTQRVGSAALSAFTQVRHEIPMLSLGNAFEEVDMREFDRRVNEGLDLPAGDLFGGGAAVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186
           ++ EPK+DG  +++ Y+ G  V  A RGDG +GED+S  +R +  IP  L     P  +E
Sbjct: 118 YSCEPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPATLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   +  G K +ANPRNAA+G LR+L+     +R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNAAQLEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A      L++++  G P++  +R A      + YY E+   R+ LPY+IDG+V+K
Sbjct: 238 VSADIADTHIGNLERLKQWGMPISRELRLAKGIDECLDYYREIGERRNALPYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNSIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLQPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VTVSNATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVTERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V R          +T    A +RC G LAC AQ  + + HFVSR 
Sbjct: 407 RPVQIPESCPVCGSHVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++           I  PAD++ L+  Q           GF +VS   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEN----LIASPADLYRLKYEQIIDLE------GFAEVSSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  +L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +         
Sbjct: 517 KAIEDSKRPALARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQVLTY--------- 567

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAV 625
            +P VG  +A  I  F+++  N   +
Sbjct: 568 -LPDVGLEVAHEIHSFFEDSHNQEVI 592



 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 16/185 (8%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
               + +L   +  L I  VG   A+ LA  + S Q   +           DWL + +  
Sbjct: 614 EFAASTTLGGMLDKLNIPSVGPGAAQKLADKFGSLQGVIEA----------DWLDMRQA- 662

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTL 658
            + +  A+A+ EF+ NP N    +A+ +++           +      +  +  V TG+L
Sbjct: 663 -LPEKQAKAVREFFDNPANAQLAQAIEQQLQAFGMHWQSEKKVVAGLPLAGQTWVLTGSL 721

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG+K+++EE F+  L
Sbjct: 722 ELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVAFL 781

Query: 719 QQYNT 723
            ++  
Sbjct: 782 TEHGV 786


>gi|319441119|ref|ZP_07990275.1| NAD-dependent DNA ligase LigA [Corynebacterium variabile DSM 44702]
          Length = 702

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/733 (28%), Positives = 345/733 (47%), Gaps = 49/733 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           + + +       S +   +  S+L  EI +H D YY   +P+I D+E+D + R   ++  
Sbjct: 12  VSEPKQTTSPTASPDDPAERWSALAAEIRHHRDLYYYR-EPVITDAEFDTMMRELQSLEA 70

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P++     P   + +    +N     V H    LSL+ +++  +L++++ R       
Sbjct: 71  EHPEVVTGPSPTTEVAQ--PPVNSPFRNVAHREQMLSLDNVFDGGELKEWLDRT------ 122

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL- 179
               S  +  E KIDG  I + Y  G+   A  RGDG +GED++   R I  IP  LS  
Sbjct: 123 ---PSETYLTELKIDGASIDLLYLDGRLETALTRGDGVTGEDITHNARTISDIPDRLSGT 179

Query: 180 ---NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
               +P ++E+RGE++I+  DF  +N +  A G+K +ANPRNAA+G +R+ NP +   R 
Sbjct: 180 EEFPVPAVVEIRGEIFITVEDFATMNADRQAEGKKMFANPRNAAAGAMRQKNPAETAKRP 239

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L    HGLG         Q++  + +   G PV+   +Q ++   +++        R   
Sbjct: 240 LKLICHGLGAREGFEPASQHDAYRAIEAWGLPVSPYTKQVHSAEEVIAQVGYWGEHRHDA 299

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            +++DGLV KVD    Q+ LG  +R+PRW I++K+  ++A T +  I I +GRTG  TP 
Sbjct: 300 THEMDGLVVKVDSLDEQEDLGATSRAPRWAIAYKYPPEEAMTTVESIRIGMGRTGRATPF 359

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A + P  + G+ ++ ATLHN                 + IR+GDRV++++AGEVIP+V+ 
Sbjct: 360 AVMSPTPVAGSTVSMATLHNPTE-----------AHRKGIRLGDRVMIRKAGEVIPEVLG 408

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            + + R    + F F S CP C + +       T +  A  RC     C  Q   RL + 
Sbjct: 409 PVEDVRDGSEREFVFSSVCPECGTPL-----APTKEGDADWRCPNTRYCPGQLQNRLNYL 463

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
             R AF+I+ LG++       S      +     +F+L     TST       G  +   
Sbjct: 464 AGRGAFDIDALGERAASDLIAS----GVLPDEGRLFSLSADDLTSTNAYTTKAGKLNRPG 519

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
             L D++ + + + L R I +L IRHVG              +  A  + +I A +    
Sbjct: 520 ELLLDNLEEAKQVDLWRVITALSIRHVGPTA----------AKALAATLQSIPAIDKASV 569

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLV 653
             +  +  VG IIAQ++ +++    +   V+A          I          +    +V
Sbjct: 570 EEMAEIDGVGGIIAQSVKDWFAVDWHREIVDAWADAGVRMEQIVEASDLPEQTLAGLTVV 629

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG+L+   R  A+E V   G   +  +S+ TD ++ G+  GSKL KA+ LGV +++E  
Sbjct: 630 VTGSLENFDRTSAKEAVESRGGKAAGSVSKNTDFLVAGEKAGSKLTKAEDLGVPVLDEAG 689

Query: 714 FLFLLQQYNTTLR 726
           F  LL +    +R
Sbjct: 690 FEKLLAEGPDAVR 702


>gi|304436815|ref|ZP_07396781.1| NAD-dependent DNA ligase LigA [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370187|gb|EFM23846.1| NAD-dependent DNA ligase LigA [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 677

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/715 (30%), Positives = 359/715 (50%), Gaps = 44/715 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I++ + ELS L ++I  +   YY  ++  I D ++D L  R   +  A+P+L      N 
Sbjct: 4   IDEVKTELSELRRKIRKYSKQYYDDNESEISDYDFDMLMMRLKKLEAAYPELITK---NS 60

Query: 74  PLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P   +GG     +   V H +P LSL+ +++ E++  F+  +   +      +  F +E 
Sbjct: 61  PTRTVGGSAQREVGLLVPHDVPMLSLQDVFSEEEIHAFVDNVLAHFP-----AAEFVVEE 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           KIDG  + +RYE G    A  RGDG   GEDV+A  R I  + + L   +P   EVRGEV
Sbjct: 116 KIDGLSLALRYENGVLARAITRGDGIVQGEDVTANARVIDDVVQKLHDALP-YFEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ +  F  +N+    +G KP+ANPRN A+G LR+L+      R L+ FV  L ++    
Sbjct: 175 YMKRAAFAEVNERQELLGLKPFANPRNCAAGTLRQLDSRITKERRLSMFVFNLQRSDGRV 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E    M+  G       R   T   + +   E+   R +LPYDIDG V KV+ F+
Sbjct: 235 FSSHTEAYVFMQSQGIKTIANYRVCRTAEEVWAAIEEIGVRRGSLPYDIDGAVVKVNSFA 294

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           ++++LG  A++PRW I++K+  ++  T L DI++ +GRTG +TP A  +PV + G  +  
Sbjct: 295 MREELGVTAKAPRWAIAYKYPPEEKETVLRDIELSVGRTGRITPTAVFDPVGLCGTRVER 354

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+DYI  L           DIR+GD +LV ++GE+IP+V  ++ ++R  +++P+  
Sbjct: 355 ATLHNQDYIDSL-----------DIRIGDTILVYKSGEIIPRVKAVLKDKRPQNSRPYVI 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C +  VR+ +       A  RC   + C AQ    L +FVSR A +I+GLG   
Sbjct: 404 PDVCPVCGAHAVREAD------TADMRCQNPV-CPAQIENHLLNFVSRSAMDIKGLGAAA 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +         A  I   A+IF+L   ++        ++G    SV     +I   +    
Sbjct: 457 VIALV----HAGYIHDVAEIFSLHEHREELVA--SGLIG-RAKSVDQRLAAIEASKQNPP 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +  LGI  +G   A +L + + S       I+ +     +    ++ VP +G+I  Q
Sbjct: 510 ERLLTGLGIAGIGRAAAAALMQEFSS-------IDALQEAARESPERILAVPDMGEITVQ 562

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            + EF+ +      ++ L        G   + V + +  K  V TGTL  + R +    +
Sbjct: 563 KLTEFFSSASACALLDRLRAAGVNFAGTRTERVGTALAGKSFVITGTLPTLSREECSALI 622

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           T  G +V   +S+KTD ++ G+  GSKL+KA+ LG+ +++E     ++ +    L
Sbjct: 623 TAHGGLVKGSVSKKTDYLVAGEAAGSKLKKAEDLGIPVLDEAALRAMISEEKDGL 677


>gi|225155696|ref|ZP_03724184.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2]
 gi|224803490|gb|EEG21725.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2]
          Length = 761

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/793 (30%), Positives = 371/793 (46%), Gaps = 123/793 (15%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   +  P+         + +++L  E++ HD+ YY+ ++P I D +YD LKR    +  
Sbjct: 1   MTPAEPTPV---------QRIANLRAELARHDELYYRAARPEISDYDYDRLKRELANLES 51

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P L   +  + P  +IG +      +V H    L+L+  ++  +LR+F  R+ +   K
Sbjct: 52  QHPQL---DLGDSPTLRIGDDRVEGFTRVRHRQAMLTLDNTYDEGELREFHVRVVKALSK 108

Query: 121 KD-----------------------------------------DNSIFFTLEPKIDGTMI 139
           ++                                         D +I + +EPKIDG  I
Sbjct: 109 ENPPPPPPPPPSPTTTATKPTEQLDLFAPVPSPPPPPLPPATFDANIAYIVEPKIDGVSI 168

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------SLNIPEIIEVRGEVYI 193
           ++ YE GK   A  RGDG  G+DV+A ++ I  +P  L      +  +P +IE+RGE+++
Sbjct: 169 SLTYEHGKLTQAITRGDGTEGDDVTANVKTIHGLPHTLCHAPGTTTPLPALIEIRGEIFL 228

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK------- 245
            + +F  +N +    G  PYANPRN A+G L++L+PT +  R L   ++GLG        
Sbjct: 229 REEEFRRINQQQEEAGDAPYANPRNLAAGTLKQLDPTLVASRRLEIVLYGLGACEPAVPP 288

Query: 246 ------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
                 T  +    Q    +++   G P    +        + +   E+  +R T  Y  
Sbjct: 289 PPPSAPTDALGFDSQTTYQRQLIAWGLPTVEKIWSVRGIDAVWTAIQELDRLRRTFAYAT 348

Query: 300 DGLVYKVDEFSLQKQLGERAR------------SPRWMISHKFAEKQASTRLLDIDIQIG 347
           DG V K+D F+ QK LG R              SPRW  + KF   +A TRL  I IQ+G
Sbjct: 349 DGAVVKLDLFAQQKILGYRGADATGRAQEARKLSPRWACAFKFPPDRAKTRLRAITIQVG 408

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG+LTPVA L+PV + G+ +  ATLHN D I             +D+R+ D VL+++AG
Sbjct: 409 RTGVLTPVAELDPVLLAGSTVRRATLHNADEIAR-----------KDVRINDTVLIEKAG 457

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           E+IP V+++IV +R PD+ P++FP  CP C +  VR           A RC     C  +
Sbjct: 458 EIIPAVINVIVEKRPPDSIPYAFPQNCPACNTPAVRIEGE------VAWRCLNP-HCPGK 510

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
              R+ HFVS+   +IEGLG++ ++           I+   D+F L R Q     K    
Sbjct: 511 MRRRIAHFVSKACLDIEGLGREIVELLLDHN----LIKTIPDLFRLTREQLLPLKKS--- 563

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
              G+    NL ++I  RR   L R I  LGI  VGA  A++LA+ + S    A      
Sbjct: 564 ---GETWSGNLINAIAARRTADLWRVIHGLGIPQVGAAAAKNLARAFRSLDALAAATLPD 620

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           +           R+P  G   AQA+ +++ +P N   +  L +             +  +
Sbjct: 621 LE----------RLPDFGATTAQAVRDWFADPHNQELIADLQRAGLAPTPPAAAATNHPL 670

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +V TGTL  + R +A E +   G  +S  +S+KT  ++ G   GSKLEKAQ+LGV 
Sbjct: 671 AGKTIVLTGTLPTLTREQATEKIEAAGGKISTSVSKKTHYVLAGAEAGSKLEKAQKLGVP 730

Query: 708 IMNEEQFLFLLQQ 720
           I++E  FL LL  
Sbjct: 731 ILDEAAFLQLLDD 743


>gi|262037707|ref|ZP_06011149.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264]
 gi|261748179|gb|EEY35576.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264]
          Length = 697

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/718 (30%), Positives = 370/718 (51%), Gaps = 60/718 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73
           +E   L ++I  ++  YY   +P+I D EYD L ++   I    P+L             
Sbjct: 16  EEYKKLREDIERYNRYYYDEDRPLISDKEYDDLIKKLQKIEEKNPELKNIYTVFSKDNSD 75

Query: 74  -----------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                      P  KIGG  +    KV HS+P LSL   +NI ++  F  R  +      
Sbjct: 76  ISDIEENPEITPTEKIGGTASEKFSKVVHSVPMLSLSNTYNISEIEDFDQRARKITGL-- 133

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D  + + LE K+DG  I++ YEKG F  A  RGDG  GEDV+  +R I ++P+ L  +I 
Sbjct: 134 DKKLEYILELKLDGLSISLIYEKGMFKQAITRGDGQIGEDVTENVREISSVPKKLKDSI- 192

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
             +EVRGE+ +  ++F  +N+     G   +ANPRNAA+G +R+L+ + +  R L+ +++
Sbjct: 193 -DVEVRGEIVLPISNFNKVNEIREEAGEDVFANPRNAAAGTIRQLDSSIVKDRGLDCYLY 251

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            L        K   E ++ ++ LGF   +   +   F  +     +    R  L Y+ DG
Sbjct: 252 YLVNPERYEIKTHLESMEFIKKLGFKTTDIFEKYTDFKELEKSIEKWHDEREKLDYETDG 311

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           LV KV++FS   +LG   +SPRW I++KF  +Q  T+LLD+  Q+GRTG++TPVA LEPV
Sbjct: 312 LVIKVNDFSYYNELGYTTKSPRWAIAYKFPAEQVKTKLLDVTFQVGRTGVITPVAELEPV 371

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+++  A+LHN D I+            ++I++GD V++++A E+IP+VV+++  +R
Sbjct: 372 TLSGSVVKRASLHNFDEIER-----------KEIKIGDNVIIEKAAEIIPQVVNVVFEDR 420

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               +    P+ CP+C S +V++          A +C   + C  +    +++FVSRDA 
Sbjct: 421 TGKEREIEKPTNCPVCGSELVKEEGQ------VALKCLNPV-CPEKVKREIEYFVSRDAM 473

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI GLG++ ++ F +       I+   DI++L+  +     ++EN+   G  SV NL ++
Sbjct: 474 NISGLGEKIVEKFIELGK----IKTVVDIYSLKDYR----EELENLEKMGKKSVDNLINN 525

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I + +N    + ++SLGI  VG   A  L K + + +N            N +   L+++
Sbjct: 526 IEESKNRGFNKVLYSLGIPFVGKFTANLLVKNFKNIENLK----------NSEIEELLQI 575

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTL 658
             VG+ +A ++  +  N  N   +  L       S       +   + I+ K  + TG L
Sbjct: 576 KGVGEKVAISVHNYLNNEDNWGKINDLKGRGLNFSLENAEEIEIEDNPIKGKNFLATGKL 635

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +K +R + +E +   G    + +S+  D +I G+  GSKLEKA++L V+++ EE+F  
Sbjct: 636 EKYKREEIKEIILSKGGNYLSGVSKNLDFLIAGEKAGSKLEKAEKLNVRVLTEEEFER 693


>gi|28870811|ref|NP_793430.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|81730313|sp|Q87YY6|DNLJ_PSESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28854060|gb|AAO57125.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 787

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/812 (29%), Positives = 381/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFN----------------------------------IEGLGKQQLDFFFKSEDPAFSIR 505
           A +                                  +EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              N+ D++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           +          A  + DWL + +   + +  A+++ +F+ +  N     A+EA LK+   
Sbjct: 647 E----------AVISADWLDMRQT--LPEKQAKSVRDFFDDNANAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++EE  L  L +    +
Sbjct: 755 AGSKLTKANELGLTVLDEEALLKRLTELGVAV 786


>gi|291288208|ref|YP_003505024.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809]
 gi|290885368|gb|ADD69068.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809]
          Length = 652

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/700 (32%), Positives = 361/700 (51%), Gaps = 53/700 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
              L  +++Y+   YY    P++ D+EYD L      I    P +      + P  ++G 
Sbjct: 3   YRELVDKLNYYSKKYYVEDDPVVADAEYDKLYNELLRIEAEDPSII---SHDSPSQRVGD 59

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +    L  VTH I  LSL   ++ E+L KF+  I+      +       +EPKIDG  + 
Sbjct: 60  KPVTGLENVTHEIKLLSLSNAYSREELEKFVENIWD-----EYPGAEIVVEPKIDGAAMV 114

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YE GK V  A RGDG +GEDV+  IR I ++P  L +     + +RGEV++    F  
Sbjct: 115 LTYEDGKLVRGATRGDGTTGEDVTHNIRTIRSLP--LEIEKSGRMIIRGEVFMPVASFER 172

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           LN      G K +ANPRNAA+G L+ L+      R L+ F++G+        +   + ++
Sbjct: 173 LNRLKGEKGEKLFANPRNAAAGTLKLLDSKTAYERGLDVFLYGMDMGG---TEHHLKDME 229

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            M+ LGF +N   R+ N F  I ++   + S R++L YDIDG V KVD  + Q+ LG   
Sbjct: 230 LMKSLGFNINEMTRKFNNFEDIWAHVEYIGSRRNSLEYDIDGAVIKVDSKAYQRSLGSTI 289

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           +SP+W I++K+  ++A T L D+D Q+GRTG +TPVA+LEPV + G+ I+NATLHNED I
Sbjct: 290 KSPKWAIAYKYPAQEAVTILRDVDFQVGRTGSITPVAKLEPVFLAGSTISNATLHNEDEI 349

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
             L            I++GD+V +++ G++IPKVV  I++ER    +   F S CP+CQS
Sbjct: 350 ARL-----------GIKIGDKVTIRKGGDIIPKVVRPIIDERDGSERDIEFLSNCPVCQS 398

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           ++ ++      +     +C   + C AQ+  +L HF SR A +I+G G+  ++      +
Sbjct: 399 KLQKE------ETDINRKCINPV-CPAQRKLKLLHFASRKAMDIQGFGEALVNKLVDDGE 451

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +   ADI+  +          +   G+G+ SV  L+++I   +    ++ ++ LGI
Sbjct: 452 ----LHDVADIYEKRFDYL------KEEDGYGEKSVQKLHEAIENSKKKPFDKVLYGLGI 501

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVG   A+ LA+Y+                 + D  +L+ V  +G   A AIV  + N 
Sbjct: 502 RHVGERTAQVLAEYFGDIDKL----------VSADEEALVNVRDIGSETAGAIVNSFAND 551

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                +  L K         ++  S  +  K  V TGTL  + R   ++ +   G  V +
Sbjct: 552 DLSNIINRLKKSGLCFTAEKKEKASDVLNGKTFVVTGTLS-LPRDYFKKVIESNGGKVLS 610

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +S K D ++VG+N GSKLEKAQ+LGV I++E     +L+
Sbjct: 611 AVSGKLDYLLVGENAGSKLEKAQKLGVAIIDESGLTKMLK 650


>gi|289649545|ref|ZP_06480888.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 787

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/812 (28%), Positives = 375/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEVENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  +  AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELNLANGVEECLDYYRDIGERRLTLNYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFN----------------------------------IEGLGKQQLDFFFKSEDPAFSIR 505
           A +                                  +EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              N+ D++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           +          A  + DWL +     + +  A+++ +F+ +  +     A+EA LK+   
Sbjct: 647 E----------AIISADWLDMR--HTLPEKQAKSVRDFFDDSAHAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLETLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++E+  L  L +    +
Sbjct: 755 AGSKLTKANELGLTVLDEDALLKRLTELGVAV 786


>gi|330963250|gb|EGH63510.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 787

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/812 (29%), Positives = 381/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFN----------------------------------IEGLGKQQLDFFFKSEDPAFSIR 505
           A +                                  +EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              N+ D++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           +          A    DWL + +   + +  A+++ +F+ +  N     A+EA LK+   
Sbjct: 647 E----------AVIGADWLDMRQA--LPEKQAKSVRDFFDDNANAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++E+  L  L +    +
Sbjct: 755 AGSKLTKANELGLTVLDEDALLKRLTELGVAV 786


>gi|331015921|gb|EGH95977.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 787

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/812 (29%), Positives = 381/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFN----------------------------------IEGLGKQQLDFFFKSEDPAFSIR 505
           A +                                  +EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              N+ D++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           +          A  + DWL + +   + +  A+++ +F+ +  N     A+EA LK+   
Sbjct: 647 E----------AVISADWLDMRQT--LPEKQAKSVRDFFDDNANAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++EE  L  L +    +
Sbjct: 755 AGSKLTKANELGLTVLDEEALLKRLTELGVAI 786


>gi|18311241|ref|NP_563175.1| NAD-dependent DNA ligase LigA [Clostridium perfringens str. 13]
 gi|18145924|dbj|BAB81965.1| DNA ligase [Clostridium perfringens str. 13]
          Length = 665

 Score =  672 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 209/715 (29%), Positives = 350/715 (48%), Gaps = 58/715 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S    +K +  L +E++ +   YY      + D +YD        +          + P
Sbjct: 1   MSKMDKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLP 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNS 125
             P  ++G  +     K TH     SL+K   +E++R++  R  +F ++       +   
Sbjct: 57  YSPTQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPP 116

Query: 126 IFFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           + + L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + 
Sbjct: 117 LKYILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDF 174

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +E+ GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +
Sbjct: 175 LEIHGEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDV 230

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G       K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV
Sbjct: 231 GYKEGAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLV 290

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
             +D+   +  LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV +
Sbjct: 291 IAIDDIRTRDLLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVEL 350

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++      
Sbjct: 351 AGVTVKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LE 398

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             +    P  CP C + +V +             C   L C  Q ++ + HF  R+A NI
Sbjct: 399 GTKEIEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNI 450

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G  ++  +  F+       IR  +D++ L+  +     K      FG     NL D+I 
Sbjct: 451 AGFSEKTAEQLFEK----LDIRDISDLYKLEYEKLLDLDK------FGPKKAQNLLDAIE 500

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K ++ +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  
Sbjct: 501 KSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQD 550

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VGDI+A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R
Sbjct: 551 VGDIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSR 610

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              +E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 611 TSIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 665


>gi|284929444|ref|YP_003421966.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A]
 gi|284809888|gb|ADB95585.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A]
          Length = 682

 Score =  672 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/721 (29%), Positives = 356/721 (49%), Gaps = 49/721 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    +K +  L + +   +  Y+  ++ I+ DS YD L R+   +    P+L      
Sbjct: 1   MNNLNIQKTIIKLRKHLQQANYAYHVLNESIMEDSVYDQLYRQLYNLEQRNPNLI---SS 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++G +  L    V H IP  SLE  +N+++L  +  R  ++ + +++  I +  E
Sbjct: 58  DSVTQRVGEKPALHFNSVKHDIPLYSLENAFNLQELEAWENRNQKYLKSQENQLIKYIAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            KIDG+ +++ YE G       RGDG  GED++  IR I +IP  L+L+  P I+ V GE
Sbjct: 118 LKIDGSALSLTYENGLLTRGLTRGDGIVGEDITQNIRTIFSIPLHLNLDDPPSIMHVNGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
            ++  ++F  +N +    G+  +ANPRNAA+G LR+L+   ++ R L FF + L     +
Sbjct: 178 AFLPLDEFKRINKQKQKEGKSLFANPRNAAAGTLRQLDSKIVSERKLQFFAYSL-YADNL 236

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K Q++ L+ ++  GF VN   R   +   + +Y+NE KS +  LPY  DG+V K++  
Sbjct: 237 DIKSQWDTLKFLQECGFLVNPYYRLCKSLDTVTNYFNEWKSAKKHLPYMTDGVVIKINSH 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQK+L    R PRW I+ K+  ++ ST + DI    GRTG +TP+A + PV +GG ++ 
Sbjct: 297 ILQKELAYTQRFPRWAIALKYPAEEISTVVEDIIFNTGRTGAVTPMAVMNPVLLGGTIVR 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN D I  L            I +GD V +++AGE+IP+V+ ++   RH   + F 
Sbjct: 357 KATLHNIDRIAQL-----------GICIGDTVTIRKAGEIIPEVIRVLKTLRHHKTKVFQ 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
               CP C S +V   N       A  RC    +C A     L H+ SRDA +I GLG++
Sbjct: 406 ISERCPKCNSMLVSFSNE------AVVRCINN-SCPAILKGNLIHWSSRDAVDISGLGEK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D    +      +   +D++ L      +  ++ N+   G  S  NL  SI   +  S
Sbjct: 459 IIDLLISN----GLVNSISDLYHL------NFQEVSNLERMGIKSAENLIKSIESSKTKS 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             + ++ LGI HVG   A  L + + S Q   Q            + +L+ +  +G  +A
Sbjct: 509 WTKVLYGLGIHHVGYTTAILLTENFSSVQQLLQA----------PYDTLVTIKGIGKEVA 558

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            +I  ++    N   +  L K       +       K       N   V TG+L  ++R 
Sbjct: 559 YSIRSWFSLEENQKLISELDKNGFVLENKNLGINQNKPDKQIFFNITFVITGSLNTLKRS 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           + +  +   G  V   +++KT+ I+VG+NPGSKL +  +L +  +NE  FL +L+  N  
Sbjct: 619 EIKNLIENFGGKVVNSVTKKTNYILVGENPGSKLAEGMKLNIIRLNETDFLRILKDANIE 678

Query: 725 L 725
           +
Sbjct: 679 I 679


>gi|190570889|ref|YP_001975247.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019404|ref|ZP_03335210.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|254782310|sp|B3CPS1|DNLJ_WOLPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190357161|emb|CAQ54574.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994826|gb|EEB55468.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 651

 Score =  672 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/706 (39%), Positives = 413/706 (58%), Gaps = 59/706 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            +E+ R++   L+ +I+YH+  YYQ SKP I D+EYD LK++  AI    P+   ++D  
Sbjct: 3   DLEKMREK---LQNQINYHNILYYQKSKPEISDAEYDELKKKLAAIE---PEAYATQD-- 54

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
                +G   +    KV H  P LSLE  ++ + + KF+++I RF      + I    EP
Sbjct: 55  ----SVGAPPDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIA---DEIEILCEP 107

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG   +  YE GKFV AA RGDG  GEDV+  +  I   P+ L  ++   +EVRGE+Y
Sbjct: 108 KIDGLSFSAIYEDGKFVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-DVQGRLEVRGEIY 166

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           IS +DFL LN+         +ANPRNAA+G L++LN      R L +F + L        
Sbjct: 167 ISNSDFLKLNENNE------FANPRNAAAGSLKQLNANITAKRPLRYFAYSLI---GGIE 217

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K Q E+L+K+  LGF VN      ++ +G++ +YNE+   R  L YDIDG+VYKV++  L
Sbjct: 218 KSQSEVLEKLEKLGFCVNEHRSLTSSLNGMLKFYNEIYDCRYNLDYDIDGIVYKVNDLVL 277

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG   ++PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A
Sbjct: 278 QSRLGSTHKAPRSALAYKFSAIYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRA 337

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN+D IK            +DIR GD V +KRAG+VIP++V +    RH +   F FP
Sbjct: 338 SLHNQDEIKR-----------KDIREGDVVTIKRAGDVIPQIVKVDEGSRHTNMPEFVFP 386

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S+V  +          A RC     C AQ +E+LKHFVS+DAF+I GLG++Q+
Sbjct: 387 DICPECGSKVQIE--------GVAVRCPEEFNCKAQIVEKLKHFVSKDAFDIVGLGEKQI 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            FF+  E     IR   DIF L+ R +  + K  +  G+G+ S+ NL  +I  RR ISL+
Sbjct: 439 KFFYDLE----LIRQIPDIFILEERLKEFSLKEHH--GWGEKSIANLLSAIQSRRVISLD 492

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIFSLGIR +G  +A  LA YY+SY N+   +++         + L+ +  +G+ +A++
Sbjct: 493 RFIFSLGIRFIGQVVAELLANYYVSYDNWYNSMSSND-------VELVGIDGIGEKVAES 545

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +  F+   RNI  +  L   +   +     +  S + NK +VFTG L+ + R +A+    
Sbjct: 546 LKSFFSQERNIKMLNDLTAYLQI-LPVSSNSSDSFLNNKIIVFTGKLRAMSRGEAKVRAK 604

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            LGA +S+ LS KTD +I G++PGSK +KA +LGV+I++EEQ+  L
Sbjct: 605 VLGAKISSSLSTKTDYLIAGEDPGSKYKKAMELGVEILDEEQWNRL 650


>gi|213968905|ref|ZP_03397045.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
 gi|301385372|ref|ZP_07233790.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063632|ref|ZP_07255173.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato K40]
 gi|302133897|ref|ZP_07259887.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926204|gb|EEB59759.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
          Length = 787

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/812 (29%), Positives = 381/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KPVEVPQSCPVCGSHVERTQLVKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AF----------------------------------NIEGLGKQQLDFFFKSEDPAFSIR 505
           A                                   ++EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              N+ +++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRNVIEALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           +          A  + DWL + +   + +  A+++ +F+ +  N     A+EA LK+   
Sbjct: 647 E----------AVISADWLDMRQT--LPEKQAKSVRDFFDDNANAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKAVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++EE  L  L +    +
Sbjct: 755 AGSKLTKANELGLTVLDEEALLKRLTELGVAV 786


>gi|330879146|gb|EGH13295.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 787

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/812 (29%), Positives = 380/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGATGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFN----------------------------------IEGLGKQQLDFFFKSEDPAFSIR 505
           A +                                  +EG  +   +   K+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              N+ D++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
                      A    DWL + +   + +  A+++ +F+ +  N     A+EA LK+   
Sbjct: 647 D----------AVIGADWLDMRQA--LPEKQAKSVRDFFDDNANAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKAVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++E+  L  L +    +
Sbjct: 755 AGSKLTKANELGLTVLDEDALLKRLTELGVAV 786


>gi|256372325|ref|YP_003110149.1| DNA ligase, NAD-dependent [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008909|gb|ACU54476.1| DNA ligase, NAD-dependent [Acidimicrobium ferrooxidans DSM 10331]
          Length = 664

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/712 (30%), Positives = 346/712 (48%), Gaps = 54/712 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A   +++L   I    + YY    PI+ D E+D L     A+  A P+L     P+ P
Sbjct: 3   ESAAARVAALRSLIQRASEAYYVADDPIMSDDEFDGLVLELRALEAAHPEL---RSPDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G     S   V H  P LSL+ +++ ++L  ++ R  R       +      E KI
Sbjct: 60  TERVGAPPGSSFAPVRHRTPMLSLDNVFDADELDAWVERTRRGLG----HDPALFFELKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  +++ Y  G+   AA RGDG  GEDV+A    +  IPR L     P ++EVRGE+++
Sbjct: 116 DGLALSLTYVDGRLAQAATRGDGEVGEDVTANALVVDAIPRRLKGVTGPGLVEVRGELFL 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            ++ F ALN+ +     +P+ANPRNAA+G LR+ +P     R L+FF + L         
Sbjct: 176 PRSAFRALNERV----ERPFANPRNAAAGSLRQKDPALTRDRGLSFFAYQL--EEGPSFD 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +E LQ +  +GF V            +      +   R  L YDIDG V KVD    +
Sbjct: 230 YHHEALQWLGEVGFQVEAHATPV-GLDELADKLAWLAEARDGLDYDIDGAVIKVDRLEDR 288

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG    +PRWMI++KF  ++  TRL+ I++ +G++G +TP A L+PV +GG+ ++ AT
Sbjct: 289 VRLGTTTHAPRWMIAYKFPAEERPTRLVGIEVSVGKSGKVTPFAVLDPVRVGGSTVSRAT 348

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I  L           D+RVGD V+V+RAGEVIP+VV  ++  R  DA P+ FP+
Sbjct: 349 LHNADQIARL-----------DVRVGDTVIVRRAGEVIPEVVRPVLELRPDDAVPWVFPT 397

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C + +VRD            RC     C  Q ++RL HF SRDA +I+GLG+Q+  
Sbjct: 398 TCPVCHTPLVRDRGE------VDWRCPNRR-CPEQLVQRLIHFASRDAMDIDGLGEQRAR 450

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  + +P D++ L               G    S+  L   I   R+  L R
Sbjct: 451 QLVE----AGLVVVPPDLYRLTDDDLARL------PGVRHRSIERLRAGIEASRSRPLGR 500

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF+L I +VG  +   +A    S         + +           RV  +G ++A ++
Sbjct: 501 VIFALAIDNVGQHVGMLVADVVGSLSGLRTVTEDEL----------CRVEGIGPVVAASV 550

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           V F  +      ++ L +    +     +     +E    V TGT+  I R +    + +
Sbjct: 551 VAFRDSDLGREILDKLERAGVGASADRPRAAGGPLEGLSFVLTGTVPGIGRAELAALIEE 610

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            G  V   +S++T  ++ G +PGSKL++A+  G+ +++ +    L+ +   +
Sbjct: 611 HGGQVRTSVSQRTSYVVAGASPGSKLDEARARGIPVIDLDGLRELIDRRGGS 662


>gi|152984776|ref|YP_001349158.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PA7]
 gi|190359272|sp|A6V7X3|DNLJ_PSEA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150959934|gb|ABR81959.1| DNA ligase, NAD-dependent [Pseudomonas aeruginosa PA7]
          Length = 794

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/650 (33%), Positives = 340/650 (52%), Gaps = 50/650 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+    P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEHPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW--------QKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEII 185
            ++ EPK+DG  +++ YE G+ V  A RGDG +GED+++ +R I  +P  L     P+I+
Sbjct: 122 EYSCEPKLDGLAVSLLYENGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPDIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++S+  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSRAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 RVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQP   P  CP+C S V R          ++    A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQPIEVPEHCPVCGSAVERTQLVRRSKGRESLSEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++           +  PAD++TL   Q      +  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYDQ------VFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LAAIADSRTPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             +P VG  +A  I  F+ +  N   +  L         + E  V++E  
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAEFA 620



 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 14/180 (7%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S     +           DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA----------DWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
           A+++ +F   P N+    A+EA L+E         K V    +  +  V TGTL+ + R 
Sbjct: 674 AKSLRDFLDEPANVQRALAIEAQLREFGMHWQSERKAVEGLPLAGQTWVLTGTLEAMSRD 733

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            A+E +  LGA V+  +S +T  ++ G   GSKL KA +LG+K+++E+  L LL +Y   
Sbjct: 734 VAKEKLEGLGAKVAGSVSARTHCVVAGPGAGSKLAKANELGLKVLDEDGLLKLLDEYGVA 793


>gi|330889906|gb|EGH22567.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. mori str.
           301020]
          Length = 787

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/812 (29%), Positives = 380/812 (46%), Gaps = 126/812 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   A
Sbjct: 358 VMVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVVERRPESA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RPVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNI----------------------------------EGLGKQQLDFFFKSEDPAFSIR 505
           A +I                                  EG  +   +  FK+   +    
Sbjct: 467 AMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLFKAIADSRQPT 526

Query: 506 IPADIFTL------------QRRQQTSTTKIENILG--------------------FGDV 533
           +   I+ L              R   S  +++  L                     F D 
Sbjct: 527 LARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDE 586

Query: 534 SVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              N+ D++                    + +LE  I  L I  VG   A+ LA  + + 
Sbjct: 587 HNRNVIDALLGECGLKLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTL 646

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634
           +          A  + DWL + +   + +  A+++ +F+ +  +     A+EA LK+   
Sbjct: 647 E----------AIISADWLDMRQT--LPEKQAKSVRDFFDDSAHAERARAIEAQLKDFGM 694

Query: 635 SIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G  
Sbjct: 695 HWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPG 754

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            GSKL KA +LG+ +++E+  L  L +   T+
Sbjct: 755 AGSKLTKANELGLTVLDEDALLKRLTELGVTV 786


>gi|81611354|sp|Q6A7A2|DNLJ_PROAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50840696|gb|AAT83363.1| DNA ligase [Propionibacterium acnes KPA171202]
          Length = 772

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/749 (28%), Positives = 342/749 (45%), Gaps = 74/749 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 50  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 106

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 107 TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 162

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L   ++P ++EVRGEV+
Sbjct: 163 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 222

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 223 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 282

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 283 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 342

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 343 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 402

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 403 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 451

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 452 DHCPSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 506

Query: 492 DFFFKSED---------------PAFSIRIPADIFTLQRRQQT----------------- 519
                 E+                   +   A +F LQ                      
Sbjct: 507 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEIKVWRRRKVNGGPGPW 566

Query: 520 ------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 567 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 626

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 627 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 676

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 677 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 736

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSK  KA+ LG  I++E  F +LL+   
Sbjct: 737 AGSKETKARDLGRPILDEAGFRYLLENGP 765


>gi|325295048|ref|YP_004281562.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065496|gb|ADY73503.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 723

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/724 (30%), Positives = 370/724 (51%), Gaps = 57/724 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            LS E+A++    L + I YHD  YY  + P+I D +YD L    + +     ++     
Sbjct: 31  KLSTEEAKELAEKLRKVIRYHDYKYYVLASPVISDYQYDKLFHALEDLEKVHSEII---T 87

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  +I         KV H     SLE  ++ EDL+++  ++ +   +     + + +
Sbjct: 88  PDSPTQRIAPAFTGEFEKVKHLAEMTSLENTYSPEDLKEWDRKVKQLLGR---EEVEYIV 144

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVR 188
           EPK DG  + + YE      A  RGDG  GED++  +R I +IP     +   I  I +R
Sbjct: 145 EPKFDGASVELVYEDDLLKRAVTRGDGVIGEDITMNVRTIKSIPLKAPFSRYGINLISIR 204

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE+ + K+ F  LN E    G   +ANPRNAA+G LR  NP+++  R L+ + + +  + 
Sbjct: 205 GEIVMPKSVFEKLNKEREKQGLPLFANPRNAAAGTLRLKNPSEVAKRGLDCYAYQILYSE 264

Query: 248 E----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                   K Q E L+ +   GF      +       ++    + +  R +  ++ DG+V
Sbjct: 265 GKRLCDDIKTQSEALKLLAHCGFKSPRIQKVCKNIDEVIETVLQAQEERESWDFEADGMV 324

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++      LGE    P+W +++KF  KQA T+L+D+  Q+GRTG LTPVA LEPV +
Sbjct: 325 VKVNDICAWNVLGETMHHPKWAVAYKFPAKQAVTKLVDVVWQVGRTGALTPVAVLEPVEV 384

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++ A+L N D+IK            +DIR+ D V+V+RAGE IP +V  I + R  
Sbjct: 385 GGVVVSRASLFNPDFIK-----------QKDIRIFDYVIVERAGETIPYIVAPIKDRRSG 433

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             +    P+ CP+C++ +V++L+       A  RC   + C AQ  E L ++      +I
Sbjct: 434 KEKLVEVPTHCPVCKAPIVKELDE------AVPRCPN-INCPAQLKEHLVYWG--KVLDI 484

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG+   +   K+E     ++  AD++ L +           + G+G     NL   I 
Sbjct: 485 KGLGESTANILLKNE----LVKSIADLYYLNKFDLI------KLPGWGLKKAENLLKQIE 534

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K ++ +  + + +LGIRHVG + A+ LA+ +       ++IN ++   N  +  L  +  
Sbjct: 535 KSKSATFWKKLTALGIRHVGEKTAQFLAQKF-------KDINELM---NASFSELASIQG 584

Query: 604 VGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           +G I A +I  F++  +NI  ++                 E+ +   +E + +VFTG L+
Sbjct: 585 IGAITATSIRNFFKAKQNIEMIKRLEETGFYFRRTEEEEKEQKLPKPLEGQNIVFTGELE 644

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +AQ  V+ LG   +  +++KT  ++VG+NPGSK  KAQ+LG+K++NEE+FL L++
Sbjct: 645 HFTRKEAQYLVSLLGGNPTNSVTKKTSFVVVGENPGSKFAKAQKLGIKLLNEEEFLKLIK 704

Query: 720 QYNT 723
           +++ 
Sbjct: 705 KFSK 708


>gi|68536402|ref|YP_251107.1| NAD-dependent DNA ligase LigA [Corynebacterium jeikeium K411]
 gi|123748223|sp|Q4JUL8|DNLJ_CORJK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|68264001|emb|CAI37489.1| DNA ligase [Corynebacterium jeikeium K411]
          Length = 695

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 203/721 (28%), Positives = 344/721 (47%), Gaps = 57/721 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +     L  ++ +H   YY Y +P I D+++DAL +    +  A P++        P  +
Sbjct: 4   QSRWQELADQVRHHRQLYY-YGEPEISDADFDALLQELKDLEQAHPEVVTGA---SPTEE 59

Query: 78  IGGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +      S     V H    LSL+ +++ E L  ++ R           +  +  E KID
Sbjct: 60  VAPAPPTSSPFRNVDHREQMLSLDNVFDTEQLAGWLDRT---------PAKTYLTELKID 110

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEV 191
           G  I + Y  G+   A  RGDG +GED++   R +  IP  L       +PE++E+RGEV
Sbjct: 111 GASINLLYIDGQLELALTRGDGTTGEDITHNARTLDDIPDTLHGTDEFPVPELVEIRGEV 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           +I   DF A+N +  A G K +ANPRNAA+G +R+ N  D   R L    HG+G      
Sbjct: 171 FIDVEDFAAMNAQRQAEGLKMFANPRNAAAGAMRQKNSADTAKRPLKLICHGIGAREGFS 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++  + +   G PV+   +Q ++   +        + R    +++DGLV KVD   
Sbjct: 231 PASQHDAYRAIAAWGLPVSPYTKQVHSAKEVQQQVEYWGNHRHDAAHEMDGLVVKVDSLE 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  +R+PRW I++K+  ++A T L +I + IGRTG  TP A + P  + G+ ++ 
Sbjct: 291 EQLELGHTSRAPRWAIAYKYPPEEAMTTLHNIRVGIGRTGRATPYAVMAPKYVAGSTVSM 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN                 + + +GD + +++AGEVIP+V+  + ++R    +PF F
Sbjct: 351 ATLHNPTE-----------AHRKGVLLGDTITIRKAGEVIPEVLGPVEDKRTGAERPFLF 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            +FCP C +R+       +    A  RC     C  Q   RL +  SR AF+I+ LG++ 
Sbjct: 400 STFCPECGTRL-----APSKVGDADWRCPNTQYCPGQLHTRLTYLASRKAFDIDALGEKG 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                     +  +   +++F L+      T+      G  + S   L + +   +   L
Sbjct: 455 AYDLI----HSGVLADESELFDLRAEDLEKTSSYATKAGKLNKSGETLLEKLQSAKEADL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LAK++ S ++ A      +A           +  V + IA+
Sbjct: 511 WRVLVALSIRHVGPTAAKALAKHFESVEDIASASAEEMAG----------IDGVAETIAE 560

Query: 611 AIVEFYQNPRNICAVEAL-------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +I +++    +   V+          +E     G  +   S+ +E   +V TG+L+   R
Sbjct: 561 SISDWFTVDWHRRIVDRWAAAGVRMRREAGNVPGAADGVDSALLEGLTIVVTGSLEDFDR 620

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             A+E +   G   +  +S+KTD ++ G+  GSKL+KA+ LGV +++E  F  LL+    
Sbjct: 621 TAAKEAIEARGGKAAGSVSKKTDFLVAGEKAGSKLKKAEDLGVPVLDEAAFKELLENGAP 680

Query: 724 T 724
           +
Sbjct: 681 S 681


>gi|166216289|sp|A4VKN0|DNLJ_PSEU5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 788

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/685 (32%), Positives = 347/685 (50%), Gaps = 64/685 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S + A + ++ L  EI  H+  YY   +P + D+EYD L     A+    P+L     P 
Sbjct: 3   SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELV---TPE 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSI 126
            P  ++GG    +  +V H +P LSL   +  +DL  F  R+             D   +
Sbjct: 60  SPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAVV 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185
            ++ EPK+DG  +++ YE G  V  A RGDG +GED+SA +R +  IP  L     P ++
Sbjct: 120 EYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVL 179

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGE+Y+ K  F ALN   +  G KP+ANPRNAA+G LR+L+     +R L    +G+G
Sbjct: 180 EVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVG 239

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           ++          +LQ ++  G P++  ++ A       +YY+ + + R  LPY+IDG+V+
Sbjct: 240 RSDGELPDTHIGILQALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVF 299

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+    Q++LG RAR PRW I+HKF  ++  T LLD++ Q+GRTG +TPVARL+PV + 
Sbjct: 300 KVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVA 359

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            + +GD V+V+RAG+VIP+++ +I   R  D
Sbjct: 360 GVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQILGVIAERRPTD 408

Query: 425 AQPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           A+    P  CP+C S V R          ++    + +RC G LAC AQ  + + HFVSR
Sbjct: 409 ARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSR 468

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++           +R PAD++ L         ++  + GF ++S  NL
Sbjct: 469 RAMDIDGLGDKIVEQLVDK----GLVRSPADLYCLTH------EQVIELEGFAEISTRNL 518

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I+  R  SL RF+++LGI  VG E A+ LA+   S     + + +++          
Sbjct: 519 LHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDVL---------- 568

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVE---------ALLKEVSPSIGRHEKNVSSEIEN 649
           + +P VG  +A  I  F+++  N   +              +V P        +   ++ 
Sbjct: 569 VYLPDVGLEVAHEIHSFFEDEHNRTVIALLRERGVEPQEQGDVHPEFA-ACATLPDLLDR 627

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLG 674
             +        I R  AQ    + G
Sbjct: 628 LNI------PHIARTGAQRLAERFG 646



 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 21/252 (8%)

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT--STTKIENILGFGDVSV 535
           R   +++ +G+   D      D    +      F      +T  +  +   +       V
Sbjct: 552 RALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFFEDEHNRTVIALLRERGVEPQEQGDV 611

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
              + +       +L   +  L I H+    A+ LA+ + S +          A    DW
Sbjct: 612 HPEFAACA-----TLPDLLDRLNIPHIARTGAQRLAERFGSLE----------AIIAADW 656

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKK 651
           L L +V  + +  A+++ +++  P N      +EA L+E         K      +  + 
Sbjct: 657 LDLRQVERLTEKAARSLRDYFDKPENAERARLIEAQLREFGMHWESERKAAEGLPLAGQT 716

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            V TGTL+ + R + +  +  LGA V+  +S KT  ++ G   GSKL KA +LGV +++E
Sbjct: 717 WVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVVAGPGAGSKLTKANELGVTVLDE 776

Query: 712 EQFLFLLQQYNT 723
            QF+  L Q  +
Sbjct: 777 SQFIERLAQLGS 788


>gi|289450450|ref|YP_003474988.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184997|gb|ADC91422.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 758

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/701 (32%), Positives = 371/701 (52%), Gaps = 42/701 (5%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E++ L  E+++H++ YY    PII D  YDA+ RR + +  A P+   +   + P  K+
Sbjct: 94  REITELRAELNFHNNLYYVEDSPIISDYSYDAMLRRLEELETAHPEYMTT---DSPTVKV 150

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG  +    K+TH +P  SL  +++ E+L++ + R+               +E KIDG  
Sbjct: 151 GGRASEKFRKLTHIVPMQSLRDVFSREELQEAVERMQEQLPV----GAELVVEEKIDGLS 206

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ YE G FV  + RGDG  GE+++  ++ I ++P  L   +P  +EVR E+Y++K +F
Sbjct: 207 VSLEYENGVFVRGSTRGDGLVGEEITENLKQIKSLPLKLQKPLP-YLEVRAEIYLNKENF 265

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
            ALN   +A G KP+ANPRNAA+G LR+L+P     R L+FF   + +   I      E 
Sbjct: 266 AALNKAQLAAGLKPFANPRNAAAGSLRQLDPRITRDRNLSFFAFNIQRVEGITFTTHDES 325

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  +   GFPV       + F  I     ++ + R++LPY IDG V K++    +++LG 
Sbjct: 326 LFYICNEGFPVVYSSFAHSDFAKIWECVEKIATRRASLPYMIDGAVIKINNLQYREKLGV 385

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A++PRW +++K+  ++  T + DI +Q+GRTG +TP+A LEPV + G+ +++ATLHN D
Sbjct: 386 TAKTPRWAVAYKYPPEEQETVVKDIKLQVGRTGKITPLAVLEPVMVDGSCVSSATLHNAD 445

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YIK            +DIRVGD VL+ +AG+VIP +  ++++ R   A+PF  P  CP+C
Sbjct: 446 YIKA-----------KDIRVGDTVLIAKAGDVIPAIQKVVLDRRPLKAKPFVMPDKCPVC 494

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
             +++R       +     RC G L+C AQ   RL H V++DA +I  LG   L    + 
Sbjct: 495 GEKLIRRK-----ENEVDLRC-GNLSCPAQVFRRLLHMVAKDALDIADLGPAVLARLQE- 547

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  I   +DIF L   +        N+ GF   SV NL + I K +   L+RFI +L
Sbjct: 548 ---AGLINELSDIFRLAAYRPEML----NLPGFQQKSVDNLLNEIEKAKVKPLDRFIVAL 600

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG   A+ LA  +            + A    D  +L+ V  +G   AQ+I++F++
Sbjct: 601 GIDYVGVVAAKKLAVAFRK--------GGLSALAAADIETLLSVETIGQTAAQSIIDFFK 652

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            P  +  ++A  +             +   + K    TGTL+  +R + ++ +   G  V
Sbjct: 653 RPTTVALLQAWQELGVKPASPPLIEENGVWQGKIFAVTGTLENYKRSEVKQLIEARGGTV 712

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +S K   +I G+  G KL KA++LG+ + +E  F   L
Sbjct: 713 ANTVSSKIFAVIAGEKAGGKLAKAKELGIPVWSETDFAAKL 753


>gi|76801093|ref|YP_326101.1| NAD-dependent DNA ligase LigA [Natronomonas pharaonis DSM 2160]
 gi|121729348|sp|Q3ITK1|DNLJ_NATPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76556958|emb|CAI48532.1| DNA ligase (NAD) [Natronomonas pharaonis DSM 2160]
          Length = 691

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/723 (30%), Positives = 352/723 (48%), Gaps = 51/723 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P++ L    A +++ +L + I +HD  YYQ + P+I D  YD L  R + +   F   
Sbjct: 17  FEPVDELDAASATRQVETLREAIRFHDYRYYQLADPVISDRAYDQLFERLERLESKFD-- 74

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-DN 124
                   P  ++GGE    L  V H  P  S+E    ++D+R F TRI         + 
Sbjct: 75  --RSSATSPTQRVGGEPLDELETVEHVAPMRSIESSVEVDDIRDFDTRIQERLAAAGYEG 132

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + +  EPK DG  + + YE+G+   AA RGDG  G+DV+A +R I ++P  L  + P  
Sbjct: 133 PVRYLCEPKFDGLSVELVYEEGELSRAATRGDGQEGDDVTANVRTIRSVPLTLDGDCPSF 192

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           + VRGE+++ K+ F   N E +  G +P++NPRNAA+G LR+L+P+    R L+ FV  +
Sbjct: 193 LAVRGEIFMPKDAFQEYNRERLERGEEPFSNPRNAAAGTLRQLDPSVTAERPLDCFVFDI 252

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                   + +    + +   GF V++   + +     +++  EM   R++L Y+IDG+V
Sbjct: 253 LDDGGRGFETRMAEHEAVESWGFQVDDHTARVDDIEAAIAFREEMLDGRASLDYEIDGIV 312

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+D       LG  AR+PRW  ++KF  +   T + DI +Q+GRTG LTPVA L+PV +
Sbjct: 313 IKLDRKDACALLGATARAPRWAYAYKFPARTEETTVRDIVLQVGRTGRLTPVALLDPVEV 372

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ ATLHN   I  L            + +GDRV +KRAG+VIP +  ++ +ER  
Sbjct: 373 SGVEVSRATLHNPQQIAEL-----------GVGIGDRVTLKRAGDVIPYIEAVVDSER-- 419

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               F FP  CP+C+S + RD             CTGG+AC AQ    ++H+ SR   +I
Sbjct: 420 -EAHFEFPDRCPVCESPLERD--------GPLAYCTGGVACPAQLRRAVEHYASRSGLDI 470

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG+  +D        A  +    D++ L      S   +  + G+G  S  NL + + 
Sbjct: 471 EGLGESAVDQLVD----AGLVERLPDLYDL------SVADVAELDGWGRTSAENLLEELE 520

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
                 L  F+ +LGI  VG   A  +A+ + +           +            V  
Sbjct: 521 ASTEPPLPAFLSALGIPGVGTTTAADIAREFGTLDAVMDATAEELRA----------VDG 570

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G  +   I EF+ + RN   +E L K          +     +  +  VFTG+L  + R
Sbjct: 571 IGPTLGGEIAEFFDSDRNQQVIEQLRKRGV--DPEPAETAGDALSGQTFVFTGSLDGLTR 628

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A E V   G   +  +S  TD ++VGD+PG  K E A + GV+ +++  F  LL+ + 
Sbjct: 629 EEAHELVETSGGTATGSVSGNTDYLVVGDSPGQRKREAANEHGVETLSQSDFESLLESHG 688

Query: 723 TTL 725
             +
Sbjct: 689 IEI 691


>gi|289426325|ref|ZP_06428068.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
 gi|295131143|ref|YP_003581806.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
 gi|289153053|gb|EFD01771.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
 gi|291375741|gb|ADD99595.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
 gi|332676019|gb|AEE72835.1| DNA ligase [Propionibacterium acnes 266]
          Length = 753

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/749 (28%), Positives = 342/749 (45%), Gaps = 74/749 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 31  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 87

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 88  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 143

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L   ++P ++EVRGEV+
Sbjct: 144 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 203

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 204 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 263

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 264 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 323

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 324 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 383

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 384 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 432

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 433 DHCPSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 487

Query: 492 DFFFKSED---------------PAFSIRIPADIFTLQRRQQT----------------- 519
                 E+                   +   A +F LQ                      
Sbjct: 488 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 547

Query: 520 ------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 548 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 607

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 608 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 657

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 658 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 717

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSK  KA+ LG  I++E  F +LL+   
Sbjct: 718 AGSKETKARDLGRPILDEAGFRYLLENGP 746


>gi|314957538|gb|EFT01641.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA1]
          Length = 724

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/749 (28%), Positives = 342/749 (45%), Gaps = 74/749 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 2   AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 58

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 59  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L   ++P ++EVRGEV+
Sbjct: 115 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 174

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 175 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 235 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 295 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 354

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 355 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 404 DHCPSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 458

Query: 492 DFFFKSED---------------PAFSIRIPADIFTLQRRQQT----------------- 519
                 E+                   +   A +F LQ                      
Sbjct: 459 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 518

Query: 520 ------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 519 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 578

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 579 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 628

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 629 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 688

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSK  KA+ LG  I++E  F +LL+   
Sbjct: 689 AGSKETKARDLGRPILDEAGFRYLLENGP 717


>gi|146282220|ref|YP_001172373.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri A1501]
 gi|145570425|gb|ABP79531.1| DNA ligase, NAD-dependent [Pseudomonas stutzeri A1501]
          Length = 802

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/685 (32%), Positives = 347/685 (50%), Gaps = 64/685 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S + A + ++ L  EI  H+  YY   +P + D+EYD L     A+    P+L     P 
Sbjct: 17  SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELV---TPE 73

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSI 126
            P  ++GG    +  +V H +P LSL   +  +DL  F  R+             D   +
Sbjct: 74  SPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAVV 133

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185
            ++ EPK+DG  +++ YE G  V  A RGDG +GED+SA +R +  IP  L     P ++
Sbjct: 134 EYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVL 193

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGE+Y+ K  F ALN   +  G KP+ANPRNAA+G LR+L+     +R L    +G+G
Sbjct: 194 EVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVG 253

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           ++          +LQ ++  G P++  ++ A       +YY+ + + R  LPY+IDG+V+
Sbjct: 254 RSDGELPDTHIGILQALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVF 313

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+    Q++LG RAR PRW I+HKF  ++  T LLD++ Q+GRTG +TPVARL+PV + 
Sbjct: 314 KVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVA 373

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            + +GD V+V+RAG+VIP+++ +I   R  D
Sbjct: 374 GVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQILGVIAERRPTD 422

Query: 425 AQPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           A+    P  CP+C S V R          ++    + +RC G LAC AQ  + + HFVSR
Sbjct: 423 ARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSR 482

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++           +R PAD++ L         ++  + GF ++S  NL
Sbjct: 483 RAMDIDGLGDKIVEQLVDK----GLVRSPADLYCLTH------EQVIELEGFAEISTRNL 532

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I+  R  SL RF+++LGI  VG E A+ LA+   S     + + +++          
Sbjct: 533 LHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDVL---------- 582

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVE---------ALLKEVSPSIGRHEKNVSSEIEN 649
           + +P VG  +A  I  F+++  N   +              +V P        +   ++ 
Sbjct: 583 VYLPDVGLEVAHEIHSFFEDEHNRTVIALLRERGVEPQEQGDVHPEFA-ACATLPDLLDR 641

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLG 674
             +        I R  AQ    + G
Sbjct: 642 LNI------PHIARTGAQRLAERFG 660



 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 21/252 (8%)

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT--STTKIENILGFGDVSV 535
           R   +++ +G+   D      D    +      F      +T  +  +   +       V
Sbjct: 566 RALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFFEDEHNRTVIALLRERGVEPQEQGDV 625

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
              + +       +L   +  L I H+    A+ LA+ + S +          A    DW
Sbjct: 626 HPEFAACA-----TLPDLLDRLNIPHIARTGAQRLAERFGSLE----------AIIAADW 670

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKK 651
           L L +V  + +  A+++ +++  P N      +EA L+E         K      +  + 
Sbjct: 671 LDLRQVERLTEKAARSLRDYFDKPENAERARLIEAQLREFGMHWESERKAAEGLPLAGQT 730

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            V TGTL+ + R + +  +  LGA V+  +S KT  ++ G   GSKL KA +LGV +++E
Sbjct: 731 WVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVVAGPGAGSKLTKANELGVTVLDE 790

Query: 712 EQFLFLLQQYNT 723
            QF+  L Q  +
Sbjct: 791 SQFIERLAQLGS 802


>gi|188524111|ref|ZP_03004188.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|198273308|ref|ZP_03205844.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|195659974|gb|EDX53354.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|198249828|gb|EDY74608.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
          Length = 673

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/712 (30%), Positives = 373/712 (52%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD   R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG ++    KV H  P LSL   ++  DLRKF        Q    +   + +EPK
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQ----DNQNASVDLKGYVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYESI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+ +      I+  AD++ LQ+ ++        I    D S +NL +SIN  +  SLE
Sbjct: 456 NKFYDAN----LIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ LAK + +                 ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFDELTNVDACGEKAALS 558

Query: 612 IVEFYQNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++ +  NIC +         ++ +   I     N+  E +NK  V TG+   I R +
Sbjct: 559 LINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYDAKVKNSVSKKTDYVLAGAEAGTKLEKAKSLGVKII-ENEFWK 668


>gi|327480472|gb|AEA83782.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri DSM 4166]
          Length = 791

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/684 (31%), Positives = 347/684 (50%), Gaps = 62/684 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S + A + ++ L  EI  H+  YY   +P + D+EYD L     A+    P+L     P 
Sbjct: 3   SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELV---TPE 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSI 126
            P  ++GG    +  +V H +P LSL   +  +DL  F  R+             D  ++
Sbjct: 60  SPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAAV 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185
            ++ EPK+DG  +++ YE G  V  A RGDG +GED+SA +R +  IP  L     P ++
Sbjct: 120 EYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVL 179

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGE+Y+ K  F ALN   +  G KP+ANPRNAA+G LR+L+     +R L    +G+G
Sbjct: 180 EVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVG 239

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           ++          +L+ ++  G P++  ++ A       +YY+ + + R  LPY+IDG+V+
Sbjct: 240 RSDGELPNTHIGILEALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVF 299

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+    Q++LG RAR PRW I+HKF  ++  T LLD++ Q+GRTG +TPVARL+PV + 
Sbjct: 300 KVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVA 359

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            + +GD V+V+RAG+VIP+++ +I   R  D
Sbjct: 360 GVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQILGVIAERRPTD 408

Query: 425 AQPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           A+    P  CP+C S V R          ++    + +RC G LAC AQ  + + HFVSR
Sbjct: 409 ARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSR 468

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++           +R PAD++ L         ++  + GF ++S  NL
Sbjct: 469 RAMDIDGLGDKIVEQLVDK----GLVRSPADLYCLTH------EQVIELEGFAEISTRNL 518

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I+  R  SL RF+++LGI  VG E A+ LA+   S     + + +++          
Sbjct: 519 LHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDVL---------- 568

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--------HEKNVSSEIENK 650
           + +P VG  +A  I  F+++  N   +  L +                    +   ++  
Sbjct: 569 VYLPDVGLEVAHEIHSFFEDEHNRTVIALLRERGVEPQEEGDVHPEFAACATLPDLLDRL 628

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLG 674
            +        I R  AQ    + G
Sbjct: 629 NI------PHIARTGAQRLAERFG 646



 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 103/251 (41%), Gaps = 21/251 (8%)

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT--STTKIENILGFGDVSV 535
           R   +++ +G+   D      D    +      F      +T  +  +   +    +  V
Sbjct: 552 RALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFFEDEHNRTVIALLRERGVEPQEEGDV 611

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
              + +       +L   +  L I H+    A+ LA+ + S +          A    DW
Sbjct: 612 HPEFAACA-----TLPDLLDRLNIPHIARTGAQRLAERFGSLE----------AIIAADW 656

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKK 651
           L L +V  + +  A+++ +++    N     A+EA L+E         K      +  + 
Sbjct: 657 LDLRQVERLTEKAARSLRDYFDKSENAERARAIEAQLREFGMHWESERKAAEGLPLAGQT 716

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            V TGTL+ + R + +  +  LGA V+  +S KT  ++ G   GSKL KA + GV +++E
Sbjct: 717 WVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVVAGPGAGSKLTKANEFGVVVLDE 776

Query: 712 EQFLFLLQQYN 722
            QFL  L Q  
Sbjct: 777 AQFLERLAQLG 787


>gi|297621454|ref|YP_003709591.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044]
 gi|297376755|gb|ADI38585.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044]
          Length = 665

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/705 (32%), Positives = 366/705 (51%), Gaps = 46/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++   +L +E+  H+  YY    P+I D E+D L +  + I    P+     DPN P  +
Sbjct: 3   KENYEALCKEVWEHNKRYYIDHAPLINDEEFDLLLKELEEIEKMHPEWI---DPNSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +        H  P LSL   ++ E++ +FI R+ +         + F+ E K+DG 
Sbjct: 60  VGEMLTEGFPTALHQTPMLSLANTYSKEEVDEFIKRMEKLAG---HKEMAFSCELKMDGI 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            + + YE+G FV A  RGDG  G+D+SA ++ IP++P  L        IEVRGEVY+  N
Sbjct: 117 AVAVTYEQGGFVRAVTRGDGKKGDDISANLKTIPSLPLKLIDGKTLNRIEVRGEVYMPVN 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN          +ANPRNAA G L+ L+P     R L    +G+     +    QY
Sbjct: 177 AFETLNKTRKESNEALFANPRNAAGGSLKLLDPKATAQRSLAVVFYGISDPESLGLHSQY 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++   +  LG P     RQ  +   I ++  E++  R TL Y IDG+V K+D+ + QK+L
Sbjct: 237 DVHGFLGSLGLPTLEYRRQCFSREEIWNFVEEVRKKRETLSYQIDGIVIKLDDLAQQKRL 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   + PRW +++KFA +Q  TR+ DI +Q+GRTG++TPVA LEPV + G+ I+ ATLHN
Sbjct: 297 GSTGKQPRWAVAYKFAAEQTETRIRDIIVQVGRTGVITPVAELEPVLLAGSTISRATLHN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           E+ ++            +D+R+GD  L+++ G+VIPKV+ I   +R   + P+  P  CP
Sbjct: 357 EEEVER-----------KDVRIGDSALIEKGGDVIPKVISINPEKRREGSMPWKMPDVCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C   +VR           A RC     C  Q L R+ +FVS++A  I+ LG++ +    
Sbjct: 406 SCGHPLVRVEGE------VAVRCPNREGCPEQLLRRIAYFVSKEAMEIDHLGEKVVKQLI 459

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       ++ P+DI+TL + Q        N+ GF + +   L   I   +++S  RFI 
Sbjct: 460 R----IGYVKRPSDIYTLTKEQLL------NLEGFKEKAAERLKQGIENSKHVSFSRFIM 509

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGI++VGA  A  LA          Q            +  L+++  +G+  A++++E+
Sbjct: 510 ALGIKYVGAGTAELLANRSGDIDGLKQL----------SYEELLKINGIGEKAAESVIEY 559

Query: 616 YQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           + +  N+  +E      V P     +  +     NK  V TGTL+   R  A   + + G
Sbjct: 560 FSDAENLKEIERLKKFGVCPQKVERKTFIGHPFNNKTFVLTGTLENYTRTAAASLIKERG 619

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             V+  +S+KTD ++ G++PGSKLEKA+ LG++++ E +F+ ++ 
Sbjct: 620 GKVTGSVSKKTDYLLAGESPGSKLEKAESLGIQVLTESEFVKMIN 664


>gi|168211265|ref|ZP_02636890.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC
           3626]
 gi|170710700|gb|EDT22882.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC
           3626]
          Length = 662

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/711 (29%), Positives = 349/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++       +   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----DTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRKCTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+       IR  +D++ L+  +     K      FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEK----LDIRDISDLYKLEYEKLLDLDK------FGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|313834239|gb|EFS71953.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL056PA1]
 gi|314924752|gb|EFS88583.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA3]
          Length = 740

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/749 (28%), Positives = 342/749 (45%), Gaps = 74/749 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L   ++P ++EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKTPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED---------------PAFSIRIPADIFTLQRRQQT----------------- 519
                 E+                   +   A +F LQ                      
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534

Query: 520 ------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSK  KA+ LG  I++E  F +LL+   
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLENGP 733


>gi|313763487|gb|EFS34851.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA1]
 gi|313773641|gb|EFS39607.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL074PA1]
 gi|313801268|gb|EFS42519.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA2]
 gi|313808052|gb|EFS46533.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA2]
 gi|313811476|gb|EFS49190.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA1]
 gi|313813500|gb|EFS51214.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA1]
 gi|313816668|gb|EFS54382.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA1]
 gi|313819621|gb|EFS57335.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA2]
 gi|313826033|gb|EFS63747.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA1]
 gi|313829503|gb|EFS67217.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA2]
 gi|313831217|gb|EFS68931.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL007PA1]
 gi|313840009|gb|EFS77723.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL086PA1]
 gi|314914784|gb|EFS78615.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA4]
 gi|314920694|gb|EFS84525.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA3]
 gi|314930573|gb|EFS94404.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL067PA1]
 gi|314954471|gb|EFS98877.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA1]
 gi|314961961|gb|EFT06062.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA2]
 gi|314963768|gb|EFT07868.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA1]
 gi|314968405|gb|EFT12503.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA1]
 gi|314974093|gb|EFT18189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA1]
 gi|314976617|gb|EFT20712.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL045PA1]
 gi|314978931|gb|EFT23025.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA2]
 gi|314984280|gb|EFT28372.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA1]
 gi|314986627|gb|EFT30719.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA2]
 gi|314990983|gb|EFT35074.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA3]
 gi|315079616|gb|EFT51609.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA2]
 gi|315081153|gb|EFT53129.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL078PA1]
 gi|315087038|gb|EFT59014.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA3]
 gi|315089213|gb|EFT61189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA1]
 gi|315095437|gb|EFT67413.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL038PA1]
 gi|315099114|gb|EFT71090.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA2]
 gi|315100402|gb|EFT72378.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA1]
 gi|315109094|gb|EFT81070.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA2]
 gi|327328505|gb|EGE70267.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA2]
 gi|327329632|gb|EGE71388.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA3]
 gi|327334143|gb|EGE75857.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL097PA1]
 gi|327444292|gb|EGE90946.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA2]
 gi|327444828|gb|EGE91482.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA1]
 gi|327446317|gb|EGE92971.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA2]
 gi|327452096|gb|EGE98750.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL092PA1]
 gi|327454866|gb|EGF01521.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA3]
 gi|327457850|gb|EGF04505.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA2]
 gi|328752459|gb|EGF66075.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL020PA1]
 gi|328755302|gb|EGF68918.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA1]
 gi|328758217|gb|EGF71833.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA2]
 gi|328759940|gb|EGF73524.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL099PA1]
          Length = 740

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/749 (28%), Positives = 342/749 (45%), Gaps = 74/749 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L   ++P ++EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED---------------PAFSIRIPADIFTLQRRQQT----------------- 519
                 E+                   +   A +F LQ                      
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534

Query: 520 ------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSK  KA+ LG  I++E  F +LL+   
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLENGP 733


>gi|195867759|ref|ZP_03079760.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|195660614|gb|EDX53870.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
          Length = 673

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/712 (30%), Positives = 374/712 (52%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD + R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQVMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG ++    KV H  P LSL   ++  DLRKF        Q    +   + +EPK
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQ----DNQNASVDLKGYVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYESI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+ +      I+  AD++ LQ+ ++        I    D S +NL +SIN  +  SLE
Sbjct: 456 NKFYDAN----LIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ LAK + +                 ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFDELTNVDACGEKAALS 558

Query: 612 IVEFYQNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++ +  NIC +         ++ +   I     N+  E +NK  V TG+   I R +
Sbjct: 559 LINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYDAKVKNSVSKKTDYVLAGAEAGTKLEKAKSLGVKII-ENEFWK 668


>gi|161621794|ref|YP_056321.2| NAD-dependent DNA ligase LigA [Propionibacterium acnes KPA171202]
 gi|315106904|gb|EFT78880.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA1]
          Length = 740

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/749 (28%), Positives = 342/749 (45%), Gaps = 74/749 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L   ++P ++EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED---------------PAFSIRIPADIFTLQRRQQT----------------- 519
                 E+                   +   A +F LQ                      
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEIKVWRRRKVNGGPGPW 534

Query: 520 ------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSK  KA+ LG  I++E  F +LL+   
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLENGP 733


>gi|300933643|ref|ZP_07148899.1| NAD-dependent DNA ligase LigA [Corynebacterium resistens DSM 45100]
          Length = 680

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 209/716 (29%), Positives = 343/716 (47%), Gaps = 56/716 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
               L  E+  H + YY Y  P I D+++DAL  +   +    P+L        PL ++ 
Sbjct: 7   RWQELADEVRLHRERYY-YGDPTISDADFDALLAQLRTLEDEHPELVTGP---SPLTEVA 62

Query: 80  GEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
                +     V H    LSL+ +++   L  ++ R           +  +  E KIDG 
Sbjct: 63  PTPPTSSPFRNVDHRERMLSLDNVFDGAQLESWLERT---------PADTYLTELKIDGA 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVYI 193
            I + Y  G+   A  RGDG +GED++   + +  IP+ L       +PE++EVRGEV+I
Sbjct: 114 SINLLYVNGELELALTRGDGTTGEDITHNAKTLDDIPQKLKGTEEFPVPELVEVRGEVFI 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
           +  DF  +N +  A G K +ANPRNAA+G +R+ N  D   R L    HG+G       +
Sbjct: 174 TVEDFATMNAQRQAEGLKMFANPRNAAAGAMRQKNAEDTAKRPLRLICHGIGAREGFTPQ 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q+E  Q +   G PV+   +Q ++   +V         R    +++DG+V KVD  S Q
Sbjct: 234 SQHEAYQAIAAWGLPVSPYTKQVHSAKEVVEQVTYWGEHRHDAAHEMDGVVIKVDSLSEQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I++K+  ++A T L +I I IGRTG  TP A +EP  + G+ +T AT
Sbjct: 294 LELGATSRAPRWAIAYKYPPEEAVTTLRNIRIGIGRTGRATPYAVMEPKYVAGSTVTMAT 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN                 + + +GDR+++++AGEVIP+V+  + +ER    +PF + S
Sbjct: 354 LHNPTE-----------AHRKGVMLGDRIMIRKAGEVIPEVLGPVEDERTGKERPFIYSS 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +       + +  A  RC    +C  Q   RL +   R AF+I+ LG++   
Sbjct: 403 ICPECGTVL-----APSKEGDADWRCPNTRSCPGQLHTRLTYLSGRGAFDIDALGERAAY 457

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               S      +   + +F L+++    TT      G  + +   L + +   + + L R
Sbjct: 458 DLINS----GVLSDESGLFNLKKQDLERTTAYSTKAGSLNKAGETLLEKLESAKQVDLWR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I +L IRH G   A++LA +Y S          I A        +  +  VG+IIAQ+I
Sbjct: 514 VIVALSIRHAGPTAAKALAAHYHS----------IAAIQGASVEEMSTIEGVGEIIAQSI 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------NKKLVFTGTLQKIQRHKA 666
            +++    +   V +             +    ++          +V TGTL+   R  A
Sbjct: 564 ADWFTVDWHRNIVNSWSTAGVRMEEEVPEKSEEDLAQAKLLDGLTIVVTGTLENFDRDGA 623

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +E +   G   +  +S+KT  ++ G+  GSKL KA+ LGV ++NE+QF+ LL++ +
Sbjct: 624 KEAIEARGGKAAGSVSKKTSFLVAGEKAGSKLTKAEDLGVPVLNEQQFVELLEKGS 679


>gi|319787332|ref|YP_004146807.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1]
 gi|317465844|gb|ADV27576.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1]
          Length = 788

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/804 (29%), Positives = 393/804 (48%), Gaps = 128/804 (15%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
             + L + I   +  Y++   P I D++YDAL R  +A+    P+LA     + P  ++G
Sbjct: 10  RAAELRRRIEDANRRYHELDAPDITDAQYDALVRELEALEREHPELAAE---DSPTRRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
              +     VTH++P LSL   +  E++  F+ RI +  ++ +D  + F+ EPK+DG  I
Sbjct: 67  ATPSGRFAAVTHAVPMLSLGNAFTDEEVADFVRRIRQRLER-EDGDLAFSAEPKLDGLAI 125

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198
           ++RYE G FV  A RGDG +GEDV+A +R I  IP  L     P ++EVRGEVY+ + DF
Sbjct: 126 SLRYEDGVFVQGATRGDGATGEDVTANLRTIGDIPHQLAGKGWPRVLEVRGEVYMGRADF 185

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQYE 256
              N+     G K  ANPRN A+G LR+ +P     R L+FF +G+G             
Sbjct: 186 ERWNEHARLHGGKVLANPRNGAAGSLRQQDPKITAQRPLSFFAYGVGLVEGGELPPSHSA 245

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+++R  GFPV++ V+      G++ YY  +   R  LP+DIDG+VYK+D+   Q+++G
Sbjct: 246 TLRQLRDWGFPVSDLVQVVRGLDGLLGYYRHIGEARDGLPFDIDGVVYKLDDQEGQREMG 305

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+HKF  ++ +T +  +++ +GRTG +TP A ++PV +GG  +T ATLHN 
Sbjct: 306 FVSRAPRWAIAHKFPAQEQTTVVESVEVSVGRTGAVTPWALMQPVLVGGVTVTRATLHNA 365

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D++  L           D+R GD V+V+RAG+VIP+VV +++++R PDA+P+S P+ CP 
Sbjct: 366 DHVARL-----------DVRNGDTVIVRRAGDVIPEVVQVVIDQRPPDARPWSMPATCPA 414

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S VVR+      +  A  RC+G L+C AQ ++ + HF SR A +I+GLG++ ++   +
Sbjct: 415 CGSEVVRE------EGAAVWRCSGELSCPAQLVQSVFHFASRRAMDIDGLGERYIESLAE 468

Query: 497 SEDPAFSIRIPADIFTLQRRQQT-----STTKIENILGFGDVS-----------VTNLYD 540
                  +R  +D++ L           +  +          S             NL  
Sbjct: 469 ----FGYLRDVSDLYRLTLDDLLEMKRRADEREGTTPVAPAKSGVKSGKVATRWADNLLA 524

Query: 541 SIN--------------------KRRNISLERFIFSLG-IRH-----------VGAEIAR 568
           +I+                    +    +L +++  L  IRH           +G E+AR
Sbjct: 525 AIDTSRNTTLARFLYALGIQHVGESTAKALAQWLGDLELIRHLPWPLFRRLPDIGGEVAR 584

Query: 569 SLAKYYLSYQNFAQEINNIIA--------------------------------------- 589
           +L  ++         I+ ++                                        
Sbjct: 585 ALG-HFFDQPGNQAVIDRLLERGVRIGDSHAPDPRLGATLDLASLLADLEIPKITPVRAA 643

Query: 590 --HNNDDWLSLIRVP-------LVGDIIAQAIVEFYQNPRNICAV---EALLKEVSPSIG 637
              +  D  +L+  P        +    A A+V + + P N   +         V   + 
Sbjct: 644 QLASAFDAQALVDAPLHNLVTAGLPPETASALVAWLEAPGNAELLLRSAQAQARVRALLP 703

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
             +   S  +E   +V TGTL  + R +A+E +  LGA  +  +S+KT  ++ G+  GSK
Sbjct: 704 AADAVASGPLEGMTVVLTGTLSSMSRDEAKEKLEALGAKAAGSVSKKTSFVVAGEAAGSK 763

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQY 721
           L KA +LG+++ +E + L  L+Q+
Sbjct: 764 LAKAGELGIEVWDEARLLAFLEQH 787


>gi|253575959|ref|ZP_04853293.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844753|gb|EES72767.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 672

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 196/717 (27%), Positives = 332/717 (46%), Gaps = 60/717 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A + +  L ++++ ++  YY   +PII D EYD L     A+            P+ P 
Sbjct: 2   DAMQRMEQLVEQLNRYNYHYYTLDEPIISDKEYDQLYDELTALEAE----TGITLPDSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-------QKKDDNSIFF 128
            ++GGE+        H  P  SL+K  N E L  +  R+ +                  +
Sbjct: 58  GRVGGELLEGFKPHRHLAPLWSLDKAQNEEQLLNWNNRVLKLIADYNSKNPTTPLPDPTY 117

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E K DG  + + Y  G+ V AA RG+G  GE +   ++ I ++P  +       IEV+
Sbjct: 118 VVELKFDGLTLNLTYTDGQLVQAATRGNGVVGEGILPQVKTIKSVPLTIPYRD-GTIEVQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE  ++ +     N+        P  N RNAA+G LR LNP     R LN F + +G + 
Sbjct: 177 GEGIMNLSVLAKYNETAAE----PLKNARNAAAGALRNLNPRTTAERKLNAFFYNVGYSD 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +  +   EM+  ++   F VN  V    +F  ++   +E+   R TL Y IDG V K+ 
Sbjct: 233 NLKFQDHREMMAFLKDNRFKVNPYVTYHASFDKVIGALHEIVEKRPTLDYLIDGAVIKIT 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + PRW ++ KF  ++ +T L  +   +GRTG +TP+A++EPV + G  
Sbjct: 293 DMRTREVLGYTDKFPRWAVAFKFEAEETTTILESVSWNVGRTGKITPLAKVEPVELAGVT 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           + N TL+N   I+  +             +G RV ++R+ +VIP+++  + +E  P+   
Sbjct: 353 VQNCTLNNIGDIERKNLKYA---------LGTRVFIRRSNDVIPEILGKVPDE--PEGGE 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             +P  CP C + + +          A   C   L C  Q + R+ HF SRDA +IE   
Sbjct: 402 IIYPEVCPACGTPLEQR--------GAHLFCNNRLGCKPQIVARITHFASRDAMDIETFS 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +          ++R PAD++TL         +      FG+     L  +I   + 
Sbjct: 454 EKTAEQLHDE----LNLREPADLYTLTFDDLIKLER------FGEKKANKLLQAIEVSKG 503

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L  F+F+LGI + G    + LA ++ S +         +            +P +G I
Sbjct: 504 RDLASFLFALGIPNTGKSTTKVLADHFGSLEAVMSATTEELTA----------LPDIGGI 553

Query: 608 IAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +A +IV F+ +P     +  +L+        +        S    K +V TGTL ++ R 
Sbjct: 554 VADSIVNFFADPFYQAGIRKMLELGVSPKAPVKSAAPVTGSFFSGKTVVLTGTLHQMSRD 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720
           +A E +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ ++ +E + + LL +
Sbjct: 614 EATERLEALGAKVTGSVSKKTDLVIAGEKAGSKLAKAQELGIPVIEDENELIRLLNE 670


>gi|182625562|ref|ZP_02953333.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721]
 gi|177909250|gb|EDT71715.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721]
          Length = 662

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/711 (29%), Positives = 349/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++       +   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+       IR  +D++ L+  +     K      FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEK----LDIRDISDLYKLEYEKLLDLDK------FGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|168213168|ref|ZP_02638793.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969]
 gi|170715278|gb|EDT27460.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969]
          Length = 662

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/711 (29%), Positives = 349/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++       +   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNIKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+       IR  +D++ L+  +     K      FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEK----LDIRDISDLYKLEYEKLLDLDK------FGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|168205087|ref|ZP_02631092.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987]
 gi|170663244|gb|EDT15927.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987]
          Length = 662

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/711 (29%), Positives = 349/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++       +   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKVKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+       IR  +D++ L+  +     K      FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEK----LDIRDISDLYKLEYEKLLDLDK------FGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|58617448|ref|YP_196647.1| DNA ligase [Ehrlichia ruminantium str. Gardel]
 gi|75356732|sp|Q5FG20|DNLJ_EHRRG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|58417060|emb|CAI28173.1| DNA ligase [Ehrlichia ruminantium str. Gardel]
          Length = 674

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/707 (38%), Positives = 408/707 (57%), Gaps = 43/707 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A+  L  L ++I YHD  YY    P I D+EYD L  +   I   FP L      N  
Sbjct: 5   EEAKLILDKLNEKIRYHDLLYYTQDSPEISDAEYDDLCHQRSIILEKFPSL------NSY 58

Query: 75  LNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
               IGG+ +    KV H+   LSL+  +N +D+ KF+ R  +    K++ S+ F+ E K
Sbjct: 59  YQDYIGGDPDSRFSKVKHNERMLSLDNAFNKQDVEKFMVRTRKLLDMKENESLCFSCELK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG   +I Y+ GK   A+ RG+G+ GE+++  ++ I  +P  +  N P+ +EVRGEVYI
Sbjct: 119 IDGLSFSIIYKNGKLFQASTRGNGYFGENITNNVKTIENLPHTIQ-NAPDFLEVRGEVYI 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            +NDF+ LN+E      K +ANPRNAA+G +R+L+PT    R L + ++ +  ++ +   
Sbjct: 178 DRNDFIQLNNE-----GKNFANPRNAAAGSIRQLDPTITAQRKLKYCMYTIVNSNCL--- 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L  +   GF  N      + F   +++YN+M + RS + YDIDG++YK++   LQ
Sbjct: 230 TQTESLNLLNSWGFCTNEHTISTDNFEEAINFYNKMYNNRSNISYDIDGIIYKINNIKLQ 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG  ++SPRW I++KF   +  T+L  I IQ+GRTG+LTP+A L P+NIGG +IT A+
Sbjct: 290 HILGTTSKSPRWAIAYKFPAIEGKTKLNKISIQVGRTGVLTPIAELAPINIGGVVITRAS 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+  I+            +DIR GD V+VKRAG+VIP+VVD+  + R  +   F+FP+
Sbjct: 350 LHNKSEIER-----------KDIREGDYVIVKRAGDVIPQVVDVDKSLRTVELAEFNFPT 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S V +           +  C GGL C  Q LE+++HFVS+DAFNI GLGK+QL 
Sbjct: 399 ACPACGSTVYQAQQE------VSIYCMGGLFCHNQILEKIRHFVSKDAFNIIGLGKKQLL 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           FF++       I    DIFTL+ +      ++ +  G+G+ S+ NL  +IN  + I+LE 
Sbjct: 453 FFYE----YGLITNIIDIFTLEEKINNKNIQLSSFNGWGEKSINNLLSAINNSKVINLEN 508

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIFSLGIR VG  IA+ LA +++SY+N+  E+  +      D    I +  VG     ++
Sbjct: 509 FIFSLGIRFVGKHIAKILANHFISYKNWYTEMLKLAQ----DVNYTINIQQVGLKTINSL 564

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             F+    N+  +  L++ ++    +    V S I  K +VFTG L  + R +A+     
Sbjct: 565 RTFFTEQHNLNMINNLVEHLTIIDAQSNSYV-SLIHGKTIVFTGELSSMSRSEAKLKSET 623

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GA VS+ LS+ TD +I+G+NPGSK +KAQ L ++I++E+ +L  +Q
Sbjct: 624 AGAKVSSSLSKNTDFLIIGNNPGSKYKKAQSLNIQILSEDIWLQYIQ 670


>gi|319956399|ref|YP_004167662.1| DNA ligase, nad-dependent [Nitratifractor salsuginis DSM 16511]
 gi|319418803|gb|ADV45913.1| DNA ligase, NAD-dependent [Nitratifractor salsuginis DSM 16511]
          Length = 657

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/707 (31%), Positives = 363/707 (51%), Gaps = 57/707 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E      ++      YY    P + D  YD L R  +A   A PD     DP  P  ++
Sbjct: 6   QEYEEAVAKLKRWAYAYYVEDNPEVTDEVYDRLYREVEAYEKAHPDEI---DPTSPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G  +     K  H     S+E ++N  +  ++  RI + +  +      + +EPK DG  
Sbjct: 63  GAPLKEGFKKAKHLSRMWSMEDVFNAAEFEEWFNRIDKKYPGE-----RYYIEPKFDGAS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G    A  RGDG  GEDV+A  + I +IP  L +    +IE+RGEV ++  +F
Sbjct: 118 LNLIYENGLLKQAITRGDGVEGEDVTANAKTIRSIP--LDIAHKSLIEIRGEVLMTIEEF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N E IA G +P+ANPRNAA+G LR+L+P+    R L F   G+G  +++  +   ++
Sbjct: 176 ERINKERIAAGEQPFANPRNAAAGSLRQLDPSITAKRNLIFQPWGVG-VNDLDYEYLSDL 234

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +  +  LGF          T   I + Y ++  +RS LP  +DG+V KVD  +LQ+ LG 
Sbjct: 235 MGYVYDLGFRKPPLREVKRTPKEIEAVYEKLDKMRSQLPVMLDGMVVKVDRIALQEILGY 294

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRWM+++KF   +  TRLLD+  Q+GRTG++TPVA LEPV I G ++  ATLHN D
Sbjct: 295 TVKYPRWMVAYKFPAVEKQTRLLDVIPQVGRTGVITPVAVLEPVEIEGVVVERATLHNYD 354

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI+ L           DIR+GD V V R+G+VIPK++ ++   R    +P   P+ CP+C
Sbjct: 355 YIEKL-----------DIRIGDMVTVIRSGDVIPKIIKVLPQYRTGKEKPIQRPTRCPVC 403

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S V+              +C   L+C A+ +  + +F S+   NI+GLG++ +   +  
Sbjct: 404 GSEVL--------DEGPLVKCQN-LSCPARVVNSIIYFASKQCMNIDGLGEKIVQQLYD- 453

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  ++   D++ L++           + GFG+     L ++I   +     RF+ +L
Sbjct: 454 ---AGLVKDVEDLYHLKKEDLL------KLEGFGEKKAEKLLEAIEASKGRECWRFVNAL 504

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI H+G   ++ + + +             +   + D  +L+ +   G+ +A + +EF +
Sbjct: 505 GIEHIGEVASKKICEKFG------------LDFIHADKEALLSIEGFGEEMANSFLEFMR 552

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              N   V+ L++ V P   + E+ V S    K +V TG ++K  R + +E +  LGA V
Sbjct: 553 V--NGEKVKRLMEIVRPKPPQKEEVVESPFTGKTVVLTGAMKKP-RSEIKEMLEHLGAHV 609

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +  +S KTD +I G++PGSK +KA+QLGV ++ EE+   +L +    
Sbjct: 610 TNTVSHKTDYVIYGEDPGSKFDKAKQLGVTLLPEEKMWEMLGEQAEA 656


>gi|289428790|ref|ZP_06430473.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
 gi|289158188|gb|EFD06408.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
          Length = 753

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/749 (28%), Positives = 341/749 (45%), Gaps = 74/749 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 31  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 87

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 88  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 143

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L   ++P ++EVRGEV+
Sbjct: 144 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 203

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 204 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 263

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 264 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 323

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 324 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 383

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 384 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 432

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C   +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 433 DHCPSCGVELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 487

Query: 492 DFFFKSED---------------PAFSIRIPADIFTLQRRQQT----------------- 519
                 E+                   +   A +F LQ                      
Sbjct: 488 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 547

Query: 520 ------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 548 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 607

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 608 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 657

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 658 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 717

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSK  KA+ LG  I++E  F +LL+   
Sbjct: 718 AGSKETKARDLGRPILDEAGFRYLLENGP 746


>gi|226945096|ref|YP_002800169.1| NAD-dependent DNA ligase LigA [Azotobacter vinelandii DJ]
 gi|254781546|sp|C1DN27|DNLJ_AZOVD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226720023|gb|ACO79194.1| DNA ligase, NAD-dependent [Azotobacter vinelandii DJ]
          Length = 784

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/684 (32%), Positives = 349/684 (51%), Gaps = 65/684 (9%)

Query: 12  LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++  Q A + ++ L  EI  H+  YY    P + D+EYD L     A+    P+L     
Sbjct: 1   MTDAQTAAERIARLRSEIDEHNYRYYVLDAPSVPDAEYDRLFNELKALEAEHPELV---T 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P  P  ++GGE   +  +V H +P LSL   +  EDL  F   + +   +     + ++ 
Sbjct: 58  PESPTQRVGGEALAAFGQVRHELPMLSLGNAFAEEDLLDFDRNVCKGLDR-GIEVVEYSC 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRG 189
           EPK+DG  +++ YE G+ V  A RGDG +GED++A +R +  IP  L     P ++EVRG
Sbjct: 117 EPKLDGLAVSLLYEDGQLVRGATRGDGSTGEDITANVRTVRNIPLRLHGQGWPAVLEVRG 176

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E+Y+ +  F ALN   I  G K +ANPRNAA+G LR+L+P     R L F  +G+G+   
Sbjct: 177 EIYMPRAGFEALNARAIENGGKTFANPRNAAAGSLRQLDPKITAGRPLEFCGYGIGRFEG 236

Query: 249 IF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +    +L+ +R  G P++  ++ A +    ++YY  +   R  L YDIDG+V+KV+
Sbjct: 237 AEVPQTHTSLLETLRRWGLPISRELQLARSVQDCLAYYRAIGERRQGLAYDIDGVVFKVN 296

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q++LG RAR+P W I++KF  ++  T LL ++ Q+GRTG +TPVARL+PV + G  
Sbjct: 297 RLDWQRELGFRARTPHWAIAYKFPAQEELTELLGVEFQVGRTGAITPVARLKPVQVAGVT 356

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NA+LHN D +  L            + +GD V+V+RAG+VIP+++ ++   R  DA+P
Sbjct: 357 VSNASLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQIMQVVGERRPADARP 405

Query: 428 FSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              P  CP+C S V R    K GK        A +RC G LAC AQ  + + HFVSR A 
Sbjct: 406 VEVPRQCPVCGSAVERTQLVKRGKGRASLSEGAIYRCVGRLACQAQLKQAIVHFVSRRAM 465

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+GLG++ ++    +      ++ PAD++ L   Q           GF +VS  NL  +
Sbjct: 466 DIDGLGERIVEQLVDT----GLVKSPADLYILTFEQLVVLD------GFAEVSSNNLLAA 515

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   R  SL RFI++LGI  VG E A+ LA+   S     + +  ++          I +
Sbjct: 516 IAASRRPSLARFIYALGIPDVGEETAKRLARALGSLTRIEKALPEVL----------IWL 565

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----------SEIENK 650
           P VG  +A  I  F+++  N+  +  LL          E +              +++  
Sbjct: 566 PDVGLEVAHEIHSFFRDEHNLTVIGQLLARGVELQEEGELHAEFAACASLGELLDKLDIP 625

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLG 674
            +  TG         A++     G
Sbjct: 626 GIAATG---------AKKLAEAAG 640



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 12/176 (6%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL   +  L I  + A  A+ LA+   S           +   + DWL+L     + +  
Sbjct: 614 SLGELLDKLDIPGIAATGAKKLAEAAGSL--------EAVIGLSQDWLTLNTTKGLSEKA 665

Query: 609 AQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
            QA+ EF+  P N+    A+E  L+E         +      +  +  V TGTL+ + R 
Sbjct: 666 RQALREFFAVPANVEHARAIEGQLREFGMHWESERRCAEGLPLAGQTWVLTGTLESMSRE 725

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +  +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++EE FL LL+Q
Sbjct: 726 QGKARLESLGAKVAGSVSAKTACVVAGPGAGSKLAKAGELGVKVLDEEAFLALLRQ 781


>gi|225630391|ref|YP_002727182.1| DNA ligase [Wolbachia sp. wRi]
 gi|254782311|sp|C0R399|DNLJ_WOLWR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225592372|gb|ACN95391.1| DNA ligase [Wolbachia sp. wRi]
          Length = 662

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/707 (38%), Positives = 415/707 (58%), Gaps = 54/707 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++E+ R++   L+ +I+YH+  Y+Q +KP I D+EYD LK++   I    P++  +++  
Sbjct: 3   NLEKMREK---LQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIYATQE-- 54

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
                +G   +    KV H  P LSLE  ++ + + KF+++I RF     ++ I    EP
Sbjct: 55  ----SVGAPPDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFL---IEDKIEILCEP 107

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG   +  YE G+FV AA RGDG  GEDV+  +  I   P+ L   +   +EVRGE+Y
Sbjct: 108 KIDGLSFSAIYEDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-GVQGRLEVRGEIY 166

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           IS +DFL LN+         +ANPRNAA+G L++L+     +R L +F + L   +E   
Sbjct: 167 ISNSDFLKLNE------NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAE--- 217

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K Q E+L K+  LGF VN      ++  G++ +YNE+ + R  L YDIDG+VYKV++  L
Sbjct: 218 KSQSEVLNKLEALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVL 277

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG   ++PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A
Sbjct: 278 QNRLGNTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRA 337

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN+D IK            +DIR GD V +KRAG+VIP++V++  + R P+   F FP
Sbjct: 338 SLHNQDEIKR-----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFP 386

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S+V +          AA RC    AC AQ +E+LKHFVS+DAF+I GLG +Q+
Sbjct: 387 EVCPECGSKVRQVEGE------AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQI 440

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +FF+        I+   DIFTL+ R       +E   G+G  S+ +L ++I  RR I+L+
Sbjct: 441 EFFYD----LGLIKQIPDIFTLEER--LDEFNLEEQSGWGKKSIAHLLNAIQSRRVITLD 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIFSLGIR +G   A  LA YY+SY N+   +  +    + D   L+ +  +G  +A++
Sbjct: 495 RFIFSLGIRFIGQVAAELLADYYVSYDNWYNSMIEL----SSDNTELVGIDGIGKKVAES 550

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +  F+    NI  +  L   +   +     + +S + NK +VFTG L  + R +A+    
Sbjct: 551 LESFFSKEHNIKMLNDLTACLQI-LPVSSNSSNSVLNNKIIVFTGKLLAMSRGEAKVRAK 609

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            LGA VS+ LS KTD +I G+ PGSK +KA +LGV+I++E+Q+  ++
Sbjct: 610 TLGAKVSSHLSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVI 656


>gi|166215590|sp|Q8XI62|DNLJ_CLOPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 662

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/711 (29%), Positives = 348/711 (48%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++       +   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   +  LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRDLLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+       IR  +D++ L+  +     K      FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEK----LDIRDISDLYKLEYEKLLDLDK------FGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|314919398|gb|EFS83229.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA1]
          Length = 740

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/749 (28%), Positives = 340/749 (45%), Gaps = 74/749 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L   ++P ++EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+A PRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKNPFATPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED---------------PAFSIRIPADIFTLQRRQQT----------------- 519
                 E+                   +   A +F LQ                      
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534

Query: 520 ------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSK  KA+ LG  I++E  F  LL+   
Sbjct: 705 AGSKETKARDLGRPILDEAGFRDLLENGP 733


>gi|238926785|ref|ZP_04658545.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531]
 gi|238885317|gb|EEQ48955.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531]
          Length = 677

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/715 (30%), Positives = 357/715 (49%), Gaps = 44/715 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I++ + ELS L ++I  +   YY  ++  I D ++D L  R   +  A+P+L      N 
Sbjct: 4   IDEVKTELSELRRKIRKYSKQYYDDNESEISDYDFDMLMMRLKKLEAAYPELITK---NS 60

Query: 74  PLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P   +GG     +   V H +P LSL+ +++ E++R F+  I   +      +  F +E 
Sbjct: 61  PTRTVGGSAQREVGVLVPHDVPMLSLQDVFSEEEIRAFVDNILAHFP-----AAEFIVEE 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           KIDG  + +RYE G    A  RGDG   GEDV+A  R I  + + L   +P   EVRGEV
Sbjct: 116 KIDGLSLALRYENGVLARAITRGDGIVQGEDVTANARMIDDVVQELHDALP-YFEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+ +  F  +N+    +G KP+ANPRN A+G LR+L+      R L+ FV  L ++    
Sbjct: 175 YMKRAAFAEVNERQELLGLKPFANPRNCAAGTLRQLDSRITKERRLSMFVFNLQRSDGRM 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E    M+  G       R       +     E+   R +LPYDIDG V KV+ F+
Sbjct: 235 FSSHTEAYAFMQAQGIKTIANYRVCRMAEEVWDAIEEIGVRRGSLPYDIDGAVVKVNSFA 294

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           ++++LG  A++PRW I++K+  ++  T L DI++ +GRTG +TP A  +PV + G  +  
Sbjct: 295 MREELGVTAKAPRWAIAYKYPPEEKETVLRDIELSVGRTGRITPTAVFDPVGLCGTRVER 354

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+DYI  L           DIR+GD +LV ++GE+IP+V  ++  +R  +++P+  
Sbjct: 355 ATLHNQDYIDSL-----------DIRIGDTILVYKSGEIIPRVKAVLKEKRPQNSRPYVI 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C +  VR+ +       A  RC   + C AQ    L +FVSR A +I+GLG   
Sbjct: 404 PDVCPVCGAHAVREAD------TADMRCQNPV-CPAQIENHLLNFVSRSAMDIKGLGAAA 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     +E     I   ADIF+L   ++        ++G    SV     +I   +    
Sbjct: 457 VIALVHAE----YIHDIADIFSLHMHREELIA--SGLIG-RAKSVDQRLAAIEASKQNPP 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +  LGI  +G   A +L + + S       I+ +     +    ++ VP +G+I AQ
Sbjct: 510 ERLLTGLGIAGIGRAAAAALMQEFSS-------IDALQEAARESPERILAVPDMGEITAQ 562

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            + EF+ +      ++ L        G   + V + +  K  V TGTL  + R +    +
Sbjct: 563 KLTEFFSSASACALLDRLRAAGVNFAGTRTERVGAALAGKSFVITGTLPTLSREECSALI 622

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           T  G +V   +S+KTD ++ G+  G KL+KA+ L + I++E     ++ +    +
Sbjct: 623 TAHGGLVKGSVSKKTDYLVAGEAAGRKLKKAEDLSIPILDEAALRAMISEEKDGV 677


>gi|58696662|ref|ZP_00372215.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537163|gb|EAL60267.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 656

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/698 (39%), Positives = 408/698 (58%), Gaps = 51/698 (7%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
             L+ +I+YH+  Y+Q +KP I D+EYD LK++   I    P++  +++       +G  
Sbjct: 3   EKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIYATQE------SVGAP 53

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
            +    KV H  P LSLE  ++ + + KF+++I RF     ++ I    EPKIDG   + 
Sbjct: 54  PDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFL---IEDKIEILCEPKIDGLSFSA 110

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            YE G+FV AA RGDG  GEDV+  +  I   P+ L   +   +EVRGE+YIS +DFL L
Sbjct: 111 IYEDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-GVQGRLEVRGEIYISNSDFLKL 169

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           N+         +ANPRNAA+G L++L+     +R L +F + L   +E   K Q E+L K
Sbjct: 170 NE------NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAE---KSQSEVLNK 220

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +  LGF VN      ++  G++ +YNE+ + R  L YDIDG+VYKV++  LQ +LG   +
Sbjct: 221 LEALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHK 280

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK
Sbjct: 281 APRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIK 340

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                       +DIR GD V +KRAG+VIP++V++  + R P+   F FP  CP C S+
Sbjct: 341 R-----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSK 389

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           V +          AA RC    AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+     
Sbjct: 390 VRQVEGE------AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFYD---- 439

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              I+   DIFTL+ R       +E   G+G  S+ +L ++I  RR I+L+RFIFSLGIR
Sbjct: 440 LGLIKQIPDIFTLEER--LDEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFSLGIR 497

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
            +G   A  LA YY+SY N+   +  +    + D   L+ +  +G  +A+++  F+    
Sbjct: 498 FIGQVAAELLADYYVSYDNWYNSMIEL----SSDNTELVGIDGIGKKVAESLESFFSKEH 553

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           NI  +  L   +   +     + +S + NK +VFTG L  + R +A+     LGA VS+ 
Sbjct: 554 NIKMLNDLTACLQI-LPVSSNSSNSVLNNKIIVFTGKLLAMSRGEAKVRAKTLGAKVSSH 612

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           LS KTD +I G+ PGSK +KA +LGV+I++E+Q+  ++
Sbjct: 613 LSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVI 650


>gi|110801053|ref|YP_696931.1| NAD-dependent DNA ligase LigA [Clostridium perfringens ATCC 13124]
 gi|123049624|sp|Q0TN59|DNLJ_CLOP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110675700|gb|ABG84687.1| DNA ligase, NAD-dependent [Clostridium perfringens ATCC 13124]
          Length = 662

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/711 (29%), Positives = 349/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++       +   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----DTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+       IR  +D++ L+  +     K      FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEK----LDIRDISDLYKLEYEKLLDLDK------FGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|315083671|gb|EFT55647.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA2]
          Length = 740

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/749 (28%), Positives = 341/749 (45%), Gaps = 74/749 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
             AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AAARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L   ++P ++EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED---------------PAFSIRIPADIFTLQRRQQT----------------- 519
                 E+                   +   A +F LQ                      
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534

Query: 520 ------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSK  KA+ LG  I++E  F +LL+   
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLENGP 733


>gi|313822055|gb|EFS59769.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA1]
 gi|313823710|gb|EFS61424.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA2]
          Length = 740

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/749 (28%), Positives = 341/749 (45%), Gaps = 74/749 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L   ++P ++EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+  L
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVFL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED---------------PAFSIRIPADIFTLQRRQQT----------------- 519
                 E+                   +   A +F LQ                      
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534

Query: 520 ------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSK  KA+ LG  I++E  F +LL+   
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLENGP 733


>gi|57239421|ref|YP_180557.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579393|ref|YP_197605.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden]
 gi|81352823|sp|Q5HAI7|DNLJ_EHRRW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57161500|emb|CAH58426.1| NAD-dependent DNA ligase [Ehrlichia ruminantium str. Welgevonden]
 gi|58418019|emb|CAI27223.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden]
          Length = 674

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/707 (38%), Positives = 408/707 (57%), Gaps = 43/707 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A+  L  L ++I YHD  YY    P I D+EYD L  +   I   FP L      N  
Sbjct: 5   EEAKLILDKLNEKIRYHDLLYYTQDSPEISDAEYDDLCHQRSIILEKFPSL------NSY 58

Query: 75  LNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
               IGG+ +    KV H+   LSL+  +N +D+ KF+ R  +    K++ S+ F+ E K
Sbjct: 59  YQDYIGGDPDSRFSKVKHNERMLSLDNAFNKQDVEKFMVRTRKLLDMKENESLCFSCELK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG   +I Y+ GK   A+ RG+G+ GE+++  ++ I  +P  +  N P+ +EVRGEVYI
Sbjct: 119 IDGLSFSIIYKNGKLFQASTRGNGYFGENITNNVKTIENLPHTIQ-NAPDFLEVRGEVYI 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            +NDF+ LN+E      K +ANPRNAA+G +R+L+PT    R L + ++ +  ++ +   
Sbjct: 178 DRNDFIQLNNE-----GKNFANPRNAAAGSIRQLDPTITAQRKLKYCMYTIVNSNCL--- 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L  +   GF  N      + F   +++YN+M + RS + YDIDG++YK++   LQ
Sbjct: 230 TQTESLNLLNSWGFCTNEHTISTDNFEEAINFYNKMYNNRSNISYDIDGIIYKINNIKLQ 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG  ++SPRW I++KF   +  T+L  I IQ+GRTG+LTP+A L P+NIGG +IT A+
Sbjct: 290 HILGTTSKSPRWAIAYKFPAIEGKTKLNKISIQVGRTGVLTPIAELAPINIGGVVITRAS 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+  I+            +DIR GD V+VKRAG+VIP+VVD+  + R  +   F+FP+
Sbjct: 350 LHNKSEIER-----------KDIREGDYVIVKRAGDVIPQVVDVDKSLRTVELAEFNFPT 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S V +           +  C GGL C  Q LE+++HFVS+DAFNI GLGK+QL 
Sbjct: 399 ACPACGSTVYQAQQE------VSIYCMGGLFCHNQILEKIRHFVSKDAFNIIGLGKKQLL 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           FF++       I    DIFTL+ +      ++ +  G+G+ S+ NL  +IN  + I+LE 
Sbjct: 453 FFYE----YGLITNIIDIFTLEEKINNKNIQLSSFNGWGEKSINNLLSAINNSKVINLEN 508

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIFSLGIR VG  IA+ LA +++SY+N+  E+  +      D    I +  VG     ++
Sbjct: 509 FIFSLGIRFVGKHIAKILANHFISYKNWYTEMLKLAQ----DVNYTINIQQVGLKTINSL 564

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             F+    N+  +  L++ ++    +    V S I  K +VFTG L  + R +A+     
Sbjct: 565 RTFFIEQHNLNMINNLVEHLTIIDAQSNSYV-SLIHGKTIVFTGELSSMSRSEAKLKSET 623

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GA VS+ LS+ TD +I+G+NPGSK +KAQ L ++I++E+ +L  +Q
Sbjct: 624 AGAKVSSSLSKNTDFLIIGNNPGSKYKKAQSLNIQILSEDIWLQYIQ 670


>gi|229137131|ref|ZP_04265750.1| DNA ligase [Bacillus cereus BDRD-ST26]
 gi|228646303|gb|EEL02518.1| DNA ligase [Bacillus cereus BDRD-ST26]
          Length = 589

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/632 (35%), Positives = 353/632 (55%), Gaps = 49/632 (7%)

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL   +N  DLR F  R+    Q  DD ++ +  E KIDG  +++ YEKG+F+  A R
Sbjct: 1   MLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICELKIDGLAVSLHYEKGRFIQGATR 57

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG +GED++  ++ I  IP  L LN    +E RGE Y+ K  F+ LN+E    G   +A
Sbjct: 58  GDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEAYMPKRSFVKLNEEKEQNGEDVFA 115

Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G +R+L+P     R L+ FV+GL    E       E L  +  LGF  N   R
Sbjct: 116 NPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKTILSHSESLDFLGELGFKTNPNRR 175

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
              T   +++Y  E +  R  L Y+IDG+V KVD+ +LQ+ LG  A+SPRW I++KF  +
Sbjct: 176 TCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVALQESLGTTAKSPRWAIAYKFPAE 235

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +  TRL  I++ +GRTG++TP A LEPV + G ++  A+LHNED I+            +
Sbjct: 236 EVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDLIR-----------EK 284

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR+GD V+VK+AG++IP+VV+++ ++R  + + +  P+ CP C+S +VR          
Sbjct: 285 DIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEYHMPTHCPACESELVRLEEE------ 338

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
            A RC     C AQ  E L HFVSR+A NI+GLG++ +   F+    A  IR  AD+++L
Sbjct: 339 VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERVITQLFE----ADYIRTFADLYSL 393

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            + Q     +      FG+ S TNL  +I   +  SLER +F LGIRHVGA+ AR+ A++
Sbjct: 394 TKEQLLQLER------FGEKSATNLVQAIENSKENSLERLLFGLGIRHVGAKAARTFAEH 447

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + +     +     +            +  +G+ +AQ++V ++ N   +  ++   +   
Sbjct: 448 FETMDALVKATEEELKA----------INEIGEKMAQSVVAYFDNEDVLELLQQFKEYGV 497

Query: 634 PSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
               +       +NV S    K +V TG L+ + R +A++ +  LG  V+  +S+ TD++
Sbjct: 498 NMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLV 557

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 558 VAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 589


>gi|253583310|ref|ZP_04860508.1| DNA ligase [Fusobacterium varium ATCC 27725]
 gi|251833882|gb|EES62445.1| DNA ligase [Fusobacterium varium ATCC 27725]
          Length = 688

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/731 (30%), Positives = 364/731 (49%), Gaps = 50/731 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK+ +L   E   ++  ++ +  L  ++  ++  YY  ++ +I D EYD L      +  
Sbjct: 1   MKEMKLNFFEENDMKTDKERIEKLRADLLKYNQYYYTNNESLISDVEYDMLMNELKDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +P+    +    P   +G          KVTH  P LSL   +N E++  FI RI +  
Sbjct: 61  KYPEY---KSEASPTVIVGASNLRENKFQKVTHRKPMLSLSNTYNEEEIGDFIDRIKKLL 117

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
              ++N+I + LE K+DG  I+I+YEKGK V    RGDG  GEDV+  I  I TIP  L 
Sbjct: 118 P--EENNIKYALELKLDGLSISIQYEKGKLVKGVTRGDGAIGEDVTENILEIETIPHTLK 175

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237
              P  IE+RGE+ +  + F  LN+  +  G + +ANPRNAASG LR+++ + I  R L+
Sbjct: 176 E--PLDIEIRGEIVLPISKFETLNERRMEAGEEVFANPRNAASGTLRQIDASIIKERGLD 233

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            + + +        +   E ++ +  LG           T   +    +  +  +  L Y
Sbjct: 234 CYFYFIVDAKNYGIQTHSESIKYLESLGIKTTGVCEVLGTASALKKRIDYWEQEKEKLDY 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           + DG+V KVD      +LG   +SPRW I++KF  KQ +T LL I  Q+GRTG +TPVA 
Sbjct: 294 ETDGMVIKVDNLDFWDKLGNTTKSPRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVAE 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LE V++ G+ +  A+LHN   I+            +DIR+GD+V +++A E+IP+VV  I
Sbjct: 354 LEEVSLSGSKVKRASLHNFHEIER-----------KDIRIGDKVFIEKAAEIIPQVVKSI 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R    +  + P  CP+C S V R+            +CT  + C  +   R+++FVS
Sbjct: 403 KEFRDGSEKMITEPDKCPVCGSPVAREEGQ------VDIKCTNPV-CPGKVKGRIEYFVS 455

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           RDA NI G G + ++   +       I+   DI+ L+  +      +ENI   G  SV N
Sbjct: 456 RDAMNIGGFGSKMVEKMLE----LGFIKNVGDIYDLKDHK----EDLENIEKMGKRSVEN 507

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L DSI   +     + I++LGI  +G    + LA+   +  N  +           +   
Sbjct: 508 LLDSIEASKKRDYSKVIYALGIPFIGKYSGKILAEASRNIDNLMKM----------EIEE 557

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVF 654
           L+ +  +GD  A+A+ +F+++  NI  +  L       +      E         K  +F
Sbjct: 558 LMEIDGIGDKGAKAVYDFFRDEENIELINILRGHGLQFAMEEKEEEDQSDKIFSGKTFLF 617

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQ 713
           TGTL+  +R + +E + +LG    + +S+  D +I+G+  GSKL+KAQ+LG VKI+ EE+
Sbjct: 618 TGTLKNFKREEIKEEIEKLGGKNLSAVSKNLDYLIIGEKAGSKLKKAQELGTVKILTEEE 677

Query: 714 FLFLLQQYNTT 724
           F+ + +  +  
Sbjct: 678 FIEICKNNDKN 688


>gi|331703733|ref|YP_004400420.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802288|emb|CBW54442.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 668

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/713 (32%), Positives = 387/713 (54%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++A   ++ L+++++     YY    P + D EYD   +   ++   +P+L  S   
Sbjct: 1   MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG ++    K+TH  P LSL  +++ ++   F T++ +     D+    +  E
Sbjct: 58  DSPSQKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQVSKVSNTLDNQ---YVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+  ++ I +IP  L +N  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINVKTIKSIP--LKINKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+SK +F  +N + +      + NPRNAA+G LR+L+   +  R L+ F++    + +  
Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYI-SDDSN 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QY+ + K+  LGF  N           I +Y ++  ++++ L Y IDG+V+K+++ +
Sbjct: 232 NLTQYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDKN 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  ++ P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV + GA I+ 
Sbjct: 292 LQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISA 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E   + + F  
Sbjct: 352 ATLNNAEYIKS-----------KDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEKFKP 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
             +CP C S + ++ N           C    +CS + L  L+HF SR+A NI  LG + 
Sbjct: 401 ILYCPNCHSLLEKNENE------VDQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDRS 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+  F        I+  +DI+ L+  +     +I  I  FG  S  NL DSIN  +N SL
Sbjct: 454 LEILFNLNI----IKTISDIYRLEEYK----DQILEIENFGLKSYLNLIDSINMSKNNSL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRH+G++ A+ LA+ Y +  N  +            +  LI++  +G+ +A 
Sbjct: 506 EKVLFGLGIRHIGSKTAKILARKYQNIDNLMKA----------SYDELIQINSIGESLAL 555

Query: 611 AIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I+++++   N+  +       ++ +    + N  S I NK  V TGTL +  R + +  
Sbjct: 556 SIIDWFRIEDNLKLINELKSFNINFNYLGAKINSDSIIANKSFVITGTLTRP-REEFKTL 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +      V   +S++TD ++ G+N GSKLEKA++LGV I++E+QF  LL+   
Sbjct: 615 IENNAGKVIGSISKQTDYLLAGNNVGSKLEKAKKLGVTIIDEQQFFDLLKSEK 667


>gi|313793877|gb|EFS41901.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA1]
          Length = 740

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/749 (28%), Positives = 342/749 (45%), Gaps = 74/749 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L   ++P ++EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGPLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED---------------PAFSIRIPADIFTLQRRQQT----------------- 519
                 E+                   +   A +F LQ                      
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534

Query: 520 ------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +     +A           V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSK  KA+ LG  I++E  F +LL+   
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLENGP 733


>gi|294789790|ref|ZP_06755020.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453]
 gi|294482296|gb|EFG29993.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453]
          Length = 798

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/814 (30%), Positives = 392/814 (48%), Gaps = 149/814 (18%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L ++++ +   YY    P + DSEYD L R  +A+  A+P       P  P  ++GG + 
Sbjct: 14  LTEKLNRYAHEYYTLDAPSVPDSEYDRLYRELEALEMAYPTFRL---PESPTQRVGGAIL 70

Query: 84  LSLFKVTHSIPTLSLEKIWNI---------EDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
                V H IP LSL   ++           +   F  R+ +  +      + +T+EPK 
Sbjct: 71  REFASVRHKIPMLSLNNAFSPLDDNGKFIHTETLAFDERVRKDLELS---KVEYTIEPKF 127

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  I++ Y+ G F+ AA RGDG +GEDV+  I+ +  IP  L     P++IEVRGEV +
Sbjct: 128 DGLAISLLYQDGIFIQAATRGDGITGEDVTENIKTVRNIPLKLQGQYIPDLIEVRGEVLM 187

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL----GKTSE 248
            K DF  LN   IA  +K +ANPRNAA+G LR+LN      R L+FF +G+    G   E
Sbjct: 188 LKKDFEQLNQRQIAQNQKTFANPRNAAAGSLRQLNSRIAAERKLHFFGYGIAQFSGIQPE 247

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              K   E L  ++ LGF +  G          ++  Y  + + RSTLPY+IDG+V KV+
Sbjct: 248 NAPKTHAEELLWLQDLGFSLPTGNWHICANIAEVLQQYENLNAKRSTLPYEIDGMVIKVN 307

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             + Q++LG  +R+PRW I+HKF  ++A T++  ID+Q+GRTG +TPVARL+PV++GG +
Sbjct: 308 SLAEQEKLGFVSRAPRWAIAHKFPAEEAMTQVETIDVQVGRTGAITPVARLKPVSVGGVI 367

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH----- 422
           + NATLHN+D +             +DIR+GD V+V+RAG+VIP+VV +++  R      
Sbjct: 368 VINATLHNQDEVSR-----------KDIRIGDTVVVRRAGDVIPEVVRVVLEHRPMKIVE 416

Query: 423 -------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
                              P+  PF  P  CP+C S + R+         A  RCTGG+ 
Sbjct: 417 IQSNNIQDDLFPTTKTQSVPEFPPFRLPENCPVCGSAIEREAGE------AIARCTGGMI 470

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523
           C AQ+ + L HF SR A +I GLG +Q++     +     +   ADI+ L   +     +
Sbjct: 471 CKAQRSQGLIHFASRKAMDIVGLGDKQIEALVTQDI----LHSFADIYQLDIEK---LQQ 523

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV--------------------- 562
           I++          N+   I   R   L RF++SLGIRHV                     
Sbjct: 524 IKDSKSSATKWAENILIGIENSRKPLLSRFLYSLGIRHVGESTAKQLANAFGDLATVRHA 583

Query: 563 -----------GAEIARSLAKYYLSYQNFAQEINNIIA----------------HNNDDW 595
                      G+ +A S+A Y+   +   + +++++                      W
Sbjct: 584 PEPVLACLPDIGSVVAHSIAHYFRQPEQ-QKLLDDLLRFVEPQHTVLTINICDFAKPARW 642

Query: 596 LSLIRVPLVGDIIAQAIVEF-----------------YQNPR----NICAVEALLKEVSP 634
           LS +    + +  AQ + +                  +Q+ R    N   +  + + ++ 
Sbjct: 643 LSRLPSYKLSEKRAQELWDLAGNSVDGLLTDRVLPREWQDWRKIAENAALLREIDESLTK 702

Query: 635 SIGRHEK---------NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
              +  +         ++ SEI  K  V TGTL  ++R  A   +   G  VS  +S+KT
Sbjct: 703 FDSKQNEAYYLPLGTGSLKSEITGKTFVLTGTLPTLKREDAAAMIEAAGGKVSGSVSKKT 762

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           D ++ G+  GSKLEKA  LG+ ++NE++FL + Q
Sbjct: 763 DFVVAGEAAGSKLEKALSLGITVLNEDEFLAMFQ 796


>gi|260773253|ref|ZP_05882169.1| DNA ligase [Vibrio metschnikovii CIP 69.14]
 gi|260612392|gb|EEX37595.1| DNA ligase [Vibrio metschnikovii CIP 69.14]
          Length = 591

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/629 (35%), Positives = 350/629 (55%), Gaps = 44/629 (6%)

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+  +   +L  F  RI             F  EPK+DG  +++ Y  G+   AA R
Sbjct: 1   MLSLDNAFADSELDSFFRRIGERVAATQH--ARFCCEPKLDGLAVSLLYIDGRLTQAATR 58

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GE+++  +R I +IP  LS    P  IEVRGEV++ K  F  +N + +  G+K +
Sbjct: 59  GDGTTGENITENVRTIKSIPLKLSGTGWPSRIEVRGEVFMPKEGFERMNAQALKKGQKVF 118

Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNG 271
            NPRNAA+G LR+L+      R L F+ + +G       +   Y+   +++  G PV+  
Sbjct: 119 VNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVEGAELSTSHYDRFLQLKSWGLPVSPE 178

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            ++      +  YY  + + R+ LPY+IDG+V KVD+ +LQ++LG  AR+PRW I++KF 
Sbjct: 179 TQRVENAQQVKDYYQTIMAKRADLPYEIDGVVIKVDDIALQEKLGFVARAPRWAIAYKFP 238

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++  TRL +++ Q+GRTG +TPVA+LEP+ +GG  ++NATLHN D I+ L         
Sbjct: 239 AQEEMTRLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNADEIERL--------- 289

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
              + VGD V+++RAG+VIP++V +++  R  +AQP  FPS CP+CQS V R        
Sbjct: 290 --GVMVGDTVIIRRAGDVIPQIVSVVLERRPQEAQPIIFPSHCPVCQSDVERVEGE---- 343

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RCTGGL C AQ+ E LKHFVSR A +++GLG + ++   + E     +  PAD+F
Sbjct: 344 --AVARCTGGLVCQAQRKEALKHFVSRKAMDVDGLGDKVIEQLVEREM----VETPADLF 397

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+  + T   ++      G  S  N+  ++   +  +L RF+++LGIR VG   A +LA
Sbjct: 398 KLRAGELTVLDRM------GPKSAQNITQALINAKRTTLARFLYALGIREVGEATAMNLA 451

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           +++ + +  +Q               LI V  VG I+A  +  F+   +N   V+ L   
Sbjct: 452 QHFCTLEAISQA----------SIEQLIGVQDVGMIVASHVHAFFSQEKNQRVVQELRDL 501

Query: 632 V--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
               P I   +      +  K +V TG+L ++ R +A+  +  LGA V+  +S+ TD++ 
Sbjct: 502 GVTWPDIEPQDVAKPQPLAGKTVVLTGSLVQLSRTEAKAALQSLGAKVTGSVSKNTDMLF 561

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G+  GSKL KAQ+LG++I +E+  L LL
Sbjct: 562 AGEAAGSKLVKAQELGIEIFSEQDLLDLL 590


>gi|254234624|ref|ZP_04927947.1| DNA ligase [Pseudomonas aeruginosa C3719]
 gi|126166555|gb|EAZ52066.1| DNA ligase [Pseudomonas aeruginosa C3719]
          Length = 794

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/650 (33%), Positives = 341/650 (52%), Gaps = 50/650 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW--------QKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEII 185
            ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P  L     PEI+
Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQ    P  CP+C S V R          ++    A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++           +  PAD++TL         ++  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLVDR----GLVASPADLYTLT------YEQVFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             +P VG  +A  I  F+ +  N   +  L         + E  V++E  
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAEFA 620



 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 14/180 (7%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S     +           DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA----------DWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
           A+++ +F+  P N+    A+EA L+E         K V    +  +  V TGTL+ + R 
Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGLPLAGQTWVLTGTLEAMSRD 733

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+  L L  ++   
Sbjct: 734 VAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDEHGVA 793


>gi|168216777|ref|ZP_02642402.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239]
 gi|182381157|gb|EDT78636.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239]
          Length = 662

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 209/711 (29%), Positives = 349/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++       +   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFVEEHNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKVKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+       IR  +D++ L+  +     K      FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEK----LDIRDISDLYKLEYEKLLDLDK------FGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N            N  +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENL----------ENATFEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|256383839|gb|ACU78409.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384670|gb|ACU79239.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455996|gb|ADH22231.1| DNA ligase, NAD-dependent [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 668

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/713 (32%), Positives = 388/713 (54%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++A   ++ L+++++     YY    P + D EYD   +   ++   +P+L  S   
Sbjct: 1   MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG ++    K+TH  P LSL  +++ ++   F T+I +     D+    +  E
Sbjct: 58  DSPSQKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQISKVSNTLDNQ---YVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+  ++ I +IP  L +N  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINVKTIKSIP--LKINKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+SK +F  +N + +      + NPRNAA+G LR+L+   +  R L+ F++    + +  
Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYI-SDDSN 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QY+ + K+  LGF  N           I +Y ++  ++++ L Y IDG+V+K+++ +
Sbjct: 232 NLTQYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDKN 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  ++ P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV + GA I+ 
Sbjct: 292 LQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISA 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E   + + F  
Sbjct: 352 ATLNNAEYIKS-----------KDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEVFQP 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
             +CP C S + ++ N           C    +CS + L  L+HF SR+A NI  LG + 
Sbjct: 401 ILYCPNCHSLLEKNENE------VDQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDRS 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+  F  +     I+  +DI+ L+  +         I  FG  S  NL DSIN  +N SL
Sbjct: 454 LEILFNLKI----IQNISDIYRLEEYKDEILA----IENFGLKSYLNLIDSINMSKNNSL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRH+G++ A+ LA+ Y +  N  +            +  LI++  +G+ +A 
Sbjct: 506 EKVLFGLGIRHIGSKTAKILARKYQNIDNLMKA----------SYDELIQINSIGESLAL 555

Query: 611 AIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I+++++   N+  ++      ++ +    + N  S I NK  V TGTL +  R + +  
Sbjct: 556 SIIDWFKIEDNLKLIDELKSFNINFNYLGAKINSDSIIANKSFVITGTLTRP-REEFKTL 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +      V   +S++TD ++ G+N GSKLEKA++LGVKI++E+QF  LL+   
Sbjct: 615 IENNAGKVIGSISKQTDYLLAGNNVGSKLEKAKKLGVKIIDEQQFFDLLKSEK 667


>gi|296390104|ref|ZP_06879579.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAb1]
          Length = 794

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/650 (33%), Positives = 341/650 (52%), Gaps = 50/650 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW--------QKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEII 185
            ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P  L     P+I+
Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPDIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQ    P  CP+C S V R          ++    A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++           +  PAD++TL         ++  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLVDR----GLVASPADLYTLT------YEQVFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             +P VG  +A  I  F+ +  N   +  L         + E  V++E  
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAEFA 620



 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 14/180 (7%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S     +           DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA----------DWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
           A+++ +F+  P N+    A+EA L+E         K V    +  +  V TGTL+ + R 
Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGLPLAGQTWVLTGTLEAMSRD 733

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+  L L  ++   
Sbjct: 734 VAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVLDEDGLLKLFDEHGVA 793


>gi|78187553|ref|YP_375596.1| DNA ligase (NAD+) [Chlorobium luteolum DSM 273]
 gi|123743616|sp|Q3B278|DNLJ_PELLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78167455|gb|ABB24553.1| DNA ligase (NAD+) [Chlorobium luteolum DSM 273]
          Length = 677

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/697 (31%), Positives = 349/697 (50%), Gaps = 52/697 (7%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           H+  YY  +KP I D ++D L  R   +    P+L     P+ P  ++GG +      V 
Sbjct: 24  HNHLYYVEAKPEISDYDFDRLLLRLIELEREHPELV---TPDSPTGRVGGAVTREFPPVE 80

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H  P LSL   ++I ++ +F  R+ R  + +         E K DG  +++ Y  G  V 
Sbjct: 81  HREPMLSLSNTYSIGEVEEFSARVGRLLEAEGIRDRDMVAELKFDGVAVSLLYRDGVLVR 140

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVL-------SLNIPEIIEVRGEVYISKNDFLALND 203
            A RG+G  G+D++  +R +PT+P  L       SL     +EVRGEV++ K DF ALND
Sbjct: 141 GATRGNGRRGDDITVNLRTVPTVPLRLQTLDTPFSLGEGREVEVRGEVFMRKEDFTALND 200

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
                 R  +ANPRNA +G L+  +  ++  R L F  + L    +      +  LQ + 
Sbjct: 201 TRPEEDR--FANPRNATAGTLKLQDSAEVAVRRLWFVAYYLDGIQDPDTP-HFHRLQLLE 257

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
             GF      R       I ++       R  LPY+ DG+V K+++    K LG  ++SP
Sbjct: 258 TAGFFTGGHYRLCKGMQEIAAFIARWNEERWHLPYETDGVVLKLNDVRQWKTLGATSKSP 317

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW I++K+  +QA+T L D+  Q+GR G +TPVA LEPV + G+ ++ +TLHN D ++ L
Sbjct: 318 RWAIAYKYPAQQATTVLRDVVFQVGRLGTITPVAELEPVRLAGSTVSRSTLHNFDEMRRL 377

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                       I +GDRV+++++GEVIPKV+ ++   R  DA+    PS CP C + +V
Sbjct: 378 -----------GIMIGDRVVIEKSGEVIPKVIRVVTEARPVDARLVELPSRCPACSTPIV 426

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           R+             C     C AQ   R+ HF SR+A +I+ LG+  ++          
Sbjct: 427 REEGE------VGFYCPNEAGCPAQLKGRILHFASRNAMDIQNLGEALVEQLV----AFG 476

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            +  P D++ LQ  Q        N+   G  S  N+  ++++ R+ S  R +F+LGIRHV
Sbjct: 477 LVHDPGDLYFLQEPQL------RNLERMGPKSAQNVVRALDESRSQSYARLLFALGIRHV 530

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   AR LA+ + S          I A        L  V  +G +IA++I E+++ P   
Sbjct: 531 GQATARELARAFPS----------IEALEAASEEELADVADIGPVIARSIREWFEAPAVS 580

Query: 623 CAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
             +E L     P      K  ++S  E   +VFTG L +  R  A E V + G  + + +
Sbjct: 581 ALLEKLRDARLPLAAEDPKPLINSNFEGLSVVFTGALLRHDRQSASELVLERGGKIVSTV 640

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+KT +++ G   GSKLEKA +LG+++++EE+F  +L
Sbjct: 641 SKKTGLVVAGREAGSKLEKALKLGLRVISEEEFEAML 677


>gi|169347054|ref|ZP_02865996.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495]
 gi|169296737|gb|EDS78866.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495]
          Length = 662

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/711 (29%), Positives = 349/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELLDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++       +   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+       IR  +D++ L+  +     K      FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEK----LDIRDISDLYKLEYEKLLDLDK------FGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESLFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|15596726|ref|NP_250220.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAO1]
 gi|107100960|ref|ZP_01364878.1| hypothetical protein PaerPA_01001990 [Pseudomonas aeruginosa PACS2]
 gi|218892513|ref|YP_002441382.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa LESB58]
 gi|81541359|sp|Q9I3I4|DNLJ_PSEAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781394|sp|B7UVJ3|DNLJ_PSEA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|9947487|gb|AAG04918.1|AE004581_5 DNA ligase [Pseudomonas aeruginosa PAO1]
 gi|218772741|emb|CAW28526.1| DNA ligase [Pseudomonas aeruginosa LESB58]
          Length = 794

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/650 (33%), Positives = 341/650 (52%), Gaps = 50/650 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW--------QKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEII 185
            ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P  L     PEI+
Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQ    P  CP+C S V R          ++    A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++           +  PAD++TL         ++  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLVDR----GLVASPADLYTLT------YEQVFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LTAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             +P VG  +A  I  F+ +  N   +  L         + E  V++E  
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAEFA 620



 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 14/180 (7%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S     +           DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA----------DWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
           A+++ +F+  P N+    A+EA L+E         K V    +  +  V TGTL+ + R 
Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGLPLAGQTWVLTGTLEAMSRD 733

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+  L L  ++   
Sbjct: 734 VAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDEHGVA 793


>gi|116049473|ref|YP_791724.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122258581|sp|Q02K12|DNLJ_PSEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115584694|gb|ABJ10709.1| DNA ligase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 794

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/650 (33%), Positives = 341/650 (52%), Gaps = 50/650 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW--------QKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEII 185
            ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P  L     PEI+
Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQ    P  CP+C S V R          ++    A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++           +  PAD++TL         ++  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLVDR----GLVASPADLYTLT------YEQVFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             +P VG  +A  I  F+ +  N   +  L         + E  V++E  
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAEFA 620



 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 14/180 (7%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S     +           DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA----------DWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
           A+++ +F+  P N+    A+EA L+E         K V    +  +  V TGTL+ + R 
Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGLPLAGQTWVLTGTLEAMSRD 733

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+  L L  ++   
Sbjct: 734 VAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDEHGVA 793


>gi|257467825|ref|ZP_05631921.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 688

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/731 (31%), Positives = 366/731 (50%), Gaps = 50/731 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK+ +L   E   +++ ++ +  L  ++  ++  YY  ++ +I D EYD L      +  
Sbjct: 1   MKEMKLNFFEENDMKKDKERIEKLRADLLKYNQYYYTNNESLISDVEYDMLMNELKELEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +P+    +    P   +G          KVTH  P LSL   +N E++  FI RI R  
Sbjct: 61  KYPEY---KSEASPTVIVGASNLRENKFQKVTHKKPMLSLSNTYNEEEIGDFIDRIKRLL 117

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
            +++D  I + LE K+DG  I+I+YEKGK V    RGDG  GEDV+  I  I TIP  L 
Sbjct: 118 PERED--IKYALELKLDGLSISIQYEKGKLVRGVTRGDGAIGEDVTENIMEIETIPHTLK 175

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237
              P  +E+RGE+ +  + F +LN+  +  G + +ANPRNAASG LR+++ + I  R L+
Sbjct: 176 E--PLDMEIRGEIVLPISRFESLNERRMEAGEEVFANPRNAASGTLRQIDASIIKERGLD 233

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            + + +        +   E ++ +  LG          +T   +    +  +  +  L Y
Sbjct: 234 CYFYFIVDAKNYGIQTHSESIKYLESLGIKTTGVCEVLDTASALKKRIDYWEQEKEKLDY 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           + DG+V KVD   L  +LG   +SPRW I++KF  KQ +T LL I  Q+GRTG +TPVA 
Sbjct: 294 ETDGMVIKVDNLDLWDELGNTTKSPRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVAE 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LE V + G+ +  A+LHN   I+            +DIR+GD+V +++A E+IP+VV  I
Sbjct: 354 LEEVALSGSKVKRASLHNFHEIER-----------KDIRIGDKVFIEKAAEIIPQVVKSI 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R    +  + P  CP+C S V R+            +CT  + C  +   R+++FVS
Sbjct: 403 KEFRDGSEKMITEPDKCPVCGSPVAREEGQ------VDIKCTNPV-CPGKVKGRIEYFVS 455

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           RDA NI G G + ++   +       I+   DI+ L+  +      +ENI   G  SV N
Sbjct: 456 RDAMNIGGFGSKMVEKMLELS----FIKNVGDIYDLKDHK----EDLENIEKMGKRSVEN 507

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L DSI   +     + I++LGI  +G    + LA+   +  N  +           +   
Sbjct: 508 LLDSIEASKKRDYSKVIYALGIPFIGKYSGKLLAEASRNIDNLMKM----------EIEE 557

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVF 654
           LI +  +GD  A+A+ +F ++  NI  +  L       +      E         K  +F
Sbjct: 558 LIEIDGIGDKGAKAVYDFLRDEENIELINILKGHGLQFAMEEKEEEDQSEKIFSGKTFLF 617

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQ 713
           TGTL+  +R + +E + +LG    + +S+  D +I+G+  GSKL+KAQ+LG VKI+ EE+
Sbjct: 618 TGTLKNFKREEIKEEIEKLGGKNLSAVSKNLDYLIIGEKAGSKLKKAQELGTVKILTEEE 677

Query: 714 FLFLLQQYNTT 724
           F+ + +  N  
Sbjct: 678 FVEICKNNNKN 688


>gi|110803876|ref|YP_699521.1| NAD-dependent DNA ligase LigA [Clostridium perfringens SM101]
 gi|122956526|sp|Q0SQT6|DNLJ_CLOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110684377|gb|ABG87747.1| DNA ligase, NAD-dependent [Clostridium perfringens SM101]
          Length = 662

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/711 (28%), Positives = 349/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++       +   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  +  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLITGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----DTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+       IR  +D++ L+  +     K      FG     NL D+I K ++
Sbjct: 452 ERTAEQLFEK----LDIRDISDLYKLEYEKLLDLDK------FGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LG+ I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGITILSEEEFENMI 662


>gi|42520616|ref|NP_966531.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81652444|sp|Q73H01|DNLJ_WOLPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|42410355|gb|AAS14465.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 662

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/707 (39%), Positives = 415/707 (58%), Gaps = 54/707 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++E+ R++   L+ +I+YH+  Y+Q +KP I D+EYD LK++   I    P++  ++D  
Sbjct: 3   NLEKMREK---LQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIYATQD-- 54

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
                +G   +    KV H  P LSLE  ++ + + KF+++I RF     ++ I    EP
Sbjct: 55  ----SVGAPPDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFL---IEDKIEILCEP 107

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG   +  YE G+FV AA RGDG  GEDV+  +  I   P+ L   +   +EVRGE+Y
Sbjct: 108 KIDGLSFSAIYEDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-GVQGRLEVRGEIY 166

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           IS +DFL LN+         +ANPRNAA+G L++L+     +R L +F + L   +E   
Sbjct: 167 ISNSDFLKLNE------NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAE--- 217

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K Q E+L K+  LGF VN      ++  G++ +YNE+ + R  L YDIDG+VYKV++  L
Sbjct: 218 KSQSEVLNKLEALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVL 277

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG   ++PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVN+GG L++ A
Sbjct: 278 QNRLGNTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNVGGVLVSRA 337

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN+D IK            +DIR GD V +KRAG+VIP++V++  + R P+   F FP
Sbjct: 338 SLHNQDEIKR-----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFP 386

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S+V +          AA RC    AC AQ +E+LKHFVS+DAF+I GLG +Q+
Sbjct: 387 EVCPECGSKVRQVEGE------AAVRCPEEFACKAQMIEKLKHFVSKDAFDIVGLGDKQI 440

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +FF+        I+   DIFTL+ R       +E   G+G+ S+ NL +SI  RR I+L+
Sbjct: 441 EFFYD----LGLIKQIHDIFTLEER--LDEFNLEEQSGWGEKSIANLLNSIQSRRVITLD 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIFSLGIR +G   A  LA YY+SY N+   +  +    + D   L+ +  +G   A++
Sbjct: 495 RFIFSLGIRFIGQVAAELLADYYVSYNNWYNSMIEL----SLDNTELVGIDGIGKKGAES 550

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +  F+    NI  +  L   +   +     + +S + NK +VFTG L  + R +A+    
Sbjct: 551 LESFFSKEHNIKMLNDLTACLQI-LPVSSNSSNSVLNNKIIVFTGKLLAMSRGEAKVRAK 609

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            LGA VS+ LS KTD +I G+ PGSK +KA +LGV+I++E+Q+  ++
Sbjct: 610 TLGAKVSSHLSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVI 656


>gi|171920530|ref|ZP_02695360.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|171903225|gb|EDT49514.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
          Length = 673

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/712 (30%), Positives = 373/712 (52%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD   R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG ++    KV H  P LSL   ++  DLRKF        Q    +   + +EPK
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQ----DNQNASVDLKGYVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVNLSKRLANSVPYESI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCINIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+ +      I+  AD++ LQ+ ++        I    D S +NL +SIN  +  SLE
Sbjct: 456 NKFYDAN----LIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ LAK + +                 ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFDELTNVDACGEKAALS 558

Query: 612 IVEFYQNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++ +  NIC +         ++ +   I     N+  E +NK  V TG+   I R +
Sbjct: 559 LINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKII-ENEFWK 668


>gi|330444629|ref|YP_004377615.1| DNA ligase [Chlamydophila pecorum E58]
 gi|328807739|gb|AEB41912.1| DNA ligase, NAD-dependent [Chlamydophila pecorum E58]
          Length = 666

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/702 (32%), Positives = 370/702 (52%), Gaps = 50/702 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++    L QE+  HD  YY    P+I D +YD   R    I    P+      P  P  +
Sbjct: 11  QEYYLELCQELEKHDYQYYVLHAPLISDYDYDMKMRELQLIEKQHPEW---RVPWSPTLR 67

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +  L  V H  P LS+   ++ E+L +F +R+ +          ++T+E KIDG 
Sbjct: 68  LGDRPSGELEIVDHKYPMLSIANGYSEEELEEFFSRVEKSLGHVP----YYTIELKIDGI 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYE    V A  RG+G  GED++  IR I  +P  L    PE +EVRGEV+  +  
Sbjct: 124 AVAIRYEDRILVQAMSRGNGKQGEDITTNIRTIRALPLRLPEESPEFLEVRGEVFFKRAV 183

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N +  A+ +  +ANPRNAA G L+ L+   +  R L   ++ +   +E  +    +
Sbjct: 184 FDEINAKQRALKKPEFANPRNAAGGTLKLLSAEKVAERKLEISIYSV--LAEELSDSHCD 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+  R  G  V    R   +   +  +  E+K +RS LP +IDG+V KVD    Q+ LG
Sbjct: 242 SLECCRQWGLSVQGMPRLCRSKEEVFVFLEEIKQLRSQLPMEIDGVVIKVDSIKDQQSLG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +  RW +++K+A +QA T L DI +Q+GRTG+LTPVA+L PV + G+LI+ A+L+NE
Sbjct: 302 STGKHYRWALAYKYAPEQAETVLEDILVQVGRTGVLTPVAKLRPVFLSGSLISRASLYNE 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           + I+            +DIR+GD V++++ GEVIPKVV +++ +R  D+Q +  P  CPI
Sbjct: 362 EEIRR-----------KDIRIGDTVVLEKGGEVIPKVVGVVLGKRPEDSQSWQMPEHCPI 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   VVR+ N          RC     CS   +E+++ F  R A +IE LG++ ++  F 
Sbjct: 411 CHGDVVREGNK------VCVRCMNP-TCSGGTIEKIRFFAGRSALDIEYLGEKVINKLFD 463

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +   +DIF+L +R          + GF + SVTN+  SI K +N+ L+RF+ +
Sbjct: 464 ----MGLLHSCSDIFSLTKRDLL------QVPGFREKSVTNILKSIEKAKNVFLDRFLVA 513

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG  +A SLA+++ S +         +                 D +A +I E++
Sbjct: 514 LGIPYVGIGVASSLAEHFGSLERVISASEEELLEIEGIG----------DKVAVSIKEYF 563

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +NP+++  +E +L         H+   SS  + K  V TG    I R   +  +   G  
Sbjct: 564 ENPKHLEEIEKMLDFGVKVAPSHK--SSSICQGKTFVITGAFAGITRSDIERTIRNCGGK 621

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           VS+ +S++TD ++VG++PGSKL+KAQ+LG+ +++++    +L
Sbjct: 622 VSSSVSKQTDYLVVGEDPGSKLKKAQELGIPLLDQDSLQKIL 663


>gi|256420112|ref|YP_003120765.1| DNA ligase, NAD-dependent [Chitinophaga pinensis DSM 2588]
 gi|256035020|gb|ACU58564.1| DNA ligase, NAD-dependent [Chitinophaga pinensis DSM 2588]
          Length = 709

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/720 (32%), Positives = 379/720 (52%), Gaps = 57/720 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I+     L +L + I Y+D  YY  S P++ D EYD L      +  A PD       +
Sbjct: 26  TIQDLDSTLENLRRVIIYNDWRYYVQSDPVLSDYEYDQLFAWLKELETANPDKV---SAD 82

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++   ++ +   V H +P LSLE  +N +DL  +  +        D   I + +EP
Sbjct: 83  SPTQRVALGISKNFPTVQHLVPMLSLENSYNADDLNDWDRKAREISGLTD---IEYCIEP 139

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII--EVRGE 190
           K DG  I++ YE  K    A RGDG SGED++A IR I +IP         I   E+RGE
Sbjct: 140 KFDGASISLIYENDKLTRGATRGDGVSGEDITANIRQIRSIPLSAHFAAHGIQSIEIRGE 199

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH-------G 242
           V I+KN F A ND+  A    P ANPRNAASG LR ++P ++  R L  F++        
Sbjct: 200 VLINKNTFKAYNDQRAADNLPPLANPRNAASGSLRMVDPREVAKRGLEAFLYHMSYHVMD 259

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            GKT     K     LQ +  LGF      ++       ++ Y  E +  R  LPY+IDG
Sbjct: 260 DGKTEPQEIKTHSNTLQLLASLGFRSPAKEMKVVKGIQAVIDYVLEFEKERDNLPYEIDG 319

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV++++LQ +LG     PRW +++KF  +QA+++L  ++ Q+GRTG +TPVA+++PV
Sbjct: 320 MVIKVNDYALQDKLGMTTHHPRWAMAYKFKARQATSKLRRVEFQVGRTGSVTPVAKIDPV 379

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            IGG  + + +L NED +K            +D+++GD VLV+RAG+VIP +V  + + R
Sbjct: 380 PIGGVTVGSISLFNEDVVK-----------EKDLKIGDTVLVERAGDVIPYIVKSLADLR 428

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               +   FP+ CP+C   + +          +  RC   L C AQ +ER+ HFVS+DA 
Sbjct: 429 DGTEEEIKFPTECPVCNEPLFKPEGE------SVWRCIN-LMCEAQVVERMIHFVSKDAM 481

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I  LG+  +  F+        ++    I+ +   Q       E + GFG  S+TNL  +
Sbjct: 482 DIRSLGESNVRKFY----GLGLMKDIPGIYKIDFAQL------EKLEGFGKKSLTNLQSA 531

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I + +   L R IF LGIR+VG   A++LA            +N+++   +     L+ +
Sbjct: 532 IEQSKTQPLHRLIFGLGIRYVGETTAKTLAN----------AVNHLLDLKDWTEEQLLAL 581

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
             +G  +A +I +F+    +I  ++ L    ++    + +      ++ +  +FTGTL K
Sbjct: 582 EDIGPKVAGSINQFFHLDDSIHMLQELEALGLNLKSTKADHPGGGNLDGQTFLFTGTLNK 641

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
           ++R+ A+  V Q G  + + +S K + +IVGD+ GSKLEKA+++  ++I++E++FL L+Q
Sbjct: 642 LKRNDAEAMVEQQGGKILSGVSSKLNFLIVGDDAGSKLEKAKKINTIRILSEDEFLNLIQ 701


>gi|90424785|ref|YP_533155.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18]
 gi|123275077|sp|Q211V0|DNLJ_RHOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|90106799|gb|ABD88836.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18]
          Length = 795

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/638 (40%), Positives = 371/638 (58%), Gaps = 47/638 (7%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
            K     ++ LS  +A+ EL  L  EI  H++ YYQ   P I D+EYDAL+ R +AI   
Sbjct: 5   PKTAPTDLDTLSKAKAKVELKRLSLEIERHNNAYYQDDAPKISDAEYDALRHRVEAIEAK 64

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L      + P  K+G        KV H++P LSL   ++ +++ +F+TR+ RF +  
Sbjct: 65  FPELV---SSDSPTQKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLTRVRRFLKLD 121

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LN 180
            +       EPKIDG  +++RYE GK V AA RGDG +GEDV+A +R I  IP  L+   
Sbjct: 122 AEQIPAIVAEPKIDGLSLSLRYEHGKLVRAATRGDGFTGEDVTANVRTIKDIPHALAVAE 181

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239
            P   E+RGEVY+ K+DFLALN      G  P+ANPRN+A+G LR+ +     +R L FF
Sbjct: 182 PPAACELRGEVYMLKSDFLALNQRQETAGEPPFANPRNSAAGSLRQKDVAITASRPLKFF 241

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ S++    QY ML  ++  GF VN  +    +    +++Y ++   R+TLPYDI
Sbjct: 242 AYAWGEFSDLPEATQYGMLGWLKRAGFTVNPLITLCKSVDDALAFYRKIGEERATLPYDI 301

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG   R+PRW I+HKFA +QA+T L  I+IQ+GRTG LTPVARL 
Sbjct: 302 DGVVYKVDRLDWQERLGFAGRAPRWAIAHKFAAEQATTILNGIEIQVGRTGALTPVARLA 361

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ NATLHNEDYIK L           DI +GD V+V+RAG+VIP++V ++ +
Sbjct: 362 PVTVGGVVVQNATLHNEDYIKSL-----------DIHIGDTVVVQRAGDVIPQIVSVVRD 410

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA+P+ FP FCP C S  VRD +       A  RCTGGL C AQ +ERL+HFVSR 
Sbjct: 411 KRPEDAEPYEFPKFCPACGSHAVRDEDEGE----AVRRCTGGLICPAQAIERLRHFVSRG 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ-----------RRQQTSTTKIENIL 528
           AF+I G G+  ++  ++       +R PADIF L            R++++  T+ E   
Sbjct: 467 AFDIAGFGETYVELLYEE----GLVRNPADIFALHSKVDELKAALFRKRESLATQREEKT 522

Query: 529 GFGDVS-----------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
           G    S           V NL  +I+ RR ++  RFIF LGIRHVG   +++L +++   
Sbjct: 523 GKKRKSSLSEEKRQYTDVENLLAAIDARRTVAFNRFIFGLGIRHVGEVTSKALVRHFADV 582

Query: 578 QNFAQEIN-NIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + F   ++   +A     WL L  V  +G+I  + ++E
Sbjct: 583 KAFLDGVDAAALARPGPAWLDLKNVRYIGEITLERLLE 620



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 2/151 (1%)

Query: 568 RSLAKYYLSYQNFAQEINNII-AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
            SL  +Y + +  A  +           +  L     +G++  Q++++F++   N   V 
Sbjct: 642 ASLLSHYGNEEKIAGALQAARSEAPGPAFQQLANDSEIGEVATQSLIDFFEETNNRQVVT 701

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           AL+ +V         +  S I  K +VFTG L++  R +A+    +LGA V++ +S KTD
Sbjct: 702 ALMDQVQVERPAA-ASAKSPISGKIVVFTGALERTTRDEAKAIAERLGAKVASSVSSKTD 760

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +++ G + GSKL  AQ+ GVK++ EE++  +
Sbjct: 761 LVVAGPSAGSKLRDAQKFGVKVLTEEEWAEI 791


>gi|296393986|ref|YP_003658870.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985]
 gi|296181133|gb|ADG98039.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985]
          Length = 690

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/712 (30%), Positives = 341/712 (47%), Gaps = 48/712 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +   +L  EI  H   YY    P + D+++D L R    +             + P   
Sbjct: 13  AQRWRALADEIREHQFRYYVLDSPTVTDAQFDVLLRELQELEEE---HPELASADSPTKL 69

Query: 78  IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +GG        +V H  P LSL+ +++ E L  +  R     ++    +I F  E KIDG
Sbjct: 70  VGGAGFTTDFAEVGHIEPMLSLDNVFDEEGLLAWAQRTSNAAER----AIRFECELKIDG 125

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVY 192
             +++ YE G+   AA RGDG +GEDV+  +R I  +P  L        PE++EVRGEV+
Sbjct: 126 LGVSLVYEHGRLARAATRGDGRTGEDVTLNVRTIGDVPHELRLAPGEAPPELLEVRGEVF 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF ALN  ++A G+ P+ANPRN+A+G LR+ NP     R L    H  G TS    
Sbjct: 186 FRLKDFEALNASLVAEGKPPFANPRNSAAGSLRQKNPAVTAKRNLTMLCHSFGATSSWKP 245

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             +    +K+R  G PV+      +T   ++ +     + R+ + Y+IDGLV KV+E  L
Sbjct: 246 ATRSAAYEKLREWGLPVSEYNTTLDTPEAVLEHIRAWGNRRAEIAYEIDGLVVKVEEMDL 305

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             QLG  +R+PRW I++K+  ++  T+L DI + +GRTG +TP A ++PV + G+ ++ A
Sbjct: 306 YGQLGHTSRAPRWAIAYKYPPQEVQTKLRDIRVNVGRTGRVTPFAFMDPVLVAGSTVSLA 365

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   ++            + + +GD V++++AG+VIP+V+  +   R    + F  P
Sbjct: 366 TLHNASEVER-----------KGVLIGDTVVLRKAGDVIPEVLGPVAALRDGTERQFVMP 414

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C +++         +     RC     C AQ  ER+ H   R AF+IE LG +  
Sbjct: 415 DVCPECGTKL-----APAKESDVDIRCPNARTCPAQLRERVFHVAGRGAFDIEALGYEAA 469

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG----DVSVTNLYDSINKRRN 547
               K +     I    D+F L  ++   T    N  G        +   L  ++ + +N
Sbjct: 470 TDLLKHQ----VIEDEGDLFDLDEQRLLRTEIFVNTSGKNAGKLSANGQKLLHNLEQAKN 525

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R + +L IRHVG   AR+LA  + S           +A           V  VG  
Sbjct: 526 RDLWRVLVALSIRHVGPTAARALATRFGSVDAIFSADEQTLA----------EVDGVGPT 575

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA +++E++Q   +   + A        +    + +   +    +V TG+L+   R   Q
Sbjct: 576 IAASVIEWFQVDWHRSIL-ARWAAAGVKMAEEREELPQTLAGLTIVVTGSLEGFTRESVQ 634

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E +   G   S  +S+KT  ++ G+  GSK EKA+QLGV +++E  FL LL+
Sbjct: 635 EAIIARGGKASGSVSKKTSYVVAGEGGGSKREKAEQLGVPVIDEAAFLKLLR 686


>gi|322368190|ref|ZP_08042759.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253]
 gi|320552206|gb|EFW93851.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253]
          Length = 685

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/720 (34%), Positives = 369/720 (51%), Gaps = 57/720 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+  +    A ++   L + I +HD  YY  + P I D  YDAL  R   +  AF   
Sbjct: 19  FEPVAEMDEAGASEQAELLREAIRHHDYRYYVENDPRIGDRTYDALFTRLQELEEAFD-- 76

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              + P+ P  ++GGE    L  V H  P LS++     ED+R F  RI+R     +   
Sbjct: 77  --VQTPDSPTRRVGGEPLDELESVEHVAPMLSIDSSGEAEDVRGFDDRIHR-----EVGD 129

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  +PK DG  + + YE G+FV AA RGDG +GEDV+  +R I +IP  L  + P+ +
Sbjct: 130 VEYVCDPKFDGLSLEVVYEDGEFVRAATRGDGETGEDVTENVRTIASIPHHLRGDYPDYL 189

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
            VRGEVY+  + F   N E +  G  P+ANPRNAA+G LR+L+P+    R L+ F + + 
Sbjct: 190 AVRGEVYLPLDAFTEFNRERVEQGEDPFANPRNAAAGSLRQLDPSVTAERPLDCFFYDVL 249

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             SE F    +   + +   G  VN+   + +     + Y +E+ + R+ L Y+IDG V 
Sbjct: 250 AASEEFP-THWSEYEALPEFGLKVNDRTERVDDIEDCIEYRDELMADRADLNYEIDGTVI 308

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++     +LG  ARS RW  ++KF  +   T ++D+ +Q+GRTG LTPVA LEPV++G
Sbjct: 309 KVNDREKCAELGTTARSYRWAYAYKFPARSERTSIMDVTVQVGRTGRLTPVALLEPVDVG 368

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+LHN D I             +DI VGD V VKRAG+VIP V +++       
Sbjct: 369 GVTVSRASLHNPDEI-----------AEKDINVGDEVQVKRAGDVIPYVSEVVEK---HS 414

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              +  P  CP+C S V RD             CTGGLAC+AQ  + + ++ S D  +I+
Sbjct: 415 EGHYELPDRCPVCGSPVERD--------GPIAYCTGGLACTAQLRQAVAYYGSDDGLDID 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG+++++    +            + +L    +    ++  + G+G+ S  NL   I K
Sbjct: 467 GLGEERVNQLIDAGL----------LESLPDLYELDEKELLELEGWGEKSAENLLAEIEK 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  SL  F+ ++GI  VG E AR LA+ + S  +            N D   L  VP +
Sbjct: 517 SKRPSLADFLSAIGIPRVGTETARELARTFESMDDVM----------NADSDELEAVPDI 566

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G  +A  I EF+ + RN   VE LLK V P   R E     E+ +   VFTG+L +  R 
Sbjct: 567 GPKVAAGIREFFDSERNRSVVEQLLKHVEP--EREEVAGGDELADLTFVFTGSLSEP-RS 623

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
              E V   GA  +  +S  TD ++VG+NPG SK   A +  V I++E++F  LL++   
Sbjct: 624 DISELVENHGANATGSVSGNTDYLVVGENPGESKPNDADENDVPILSEDEFWNLLEEAGI 683


>gi|313106533|ref|ZP_07792762.1| DNA ligase [Pseudomonas aeruginosa 39016]
 gi|310879264|gb|EFQ37858.1| DNA ligase [Pseudomonas aeruginosa 39016]
          Length = 794

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/650 (33%), Positives = 342/650 (52%), Gaps = 50/650 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW--------QKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEII 185
            ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P  L     PEI+
Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S   +  Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 QVSGTLSDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQ    P  CP+C S V R          ++    A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++           +  PAD++TL         ++  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLVDR----GLVASPADLYTLT------YEQVFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             +P VG  +A  I  F+ +  N   +  L         + E  V++E  
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAEFA 620



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 14/180 (7%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S     +           DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA----------DWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
           A+++ +F+  P N+    A+EA L+E         K V    +  +  V TGTL+ + R 
Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGLPLAGQIWVLTGTLEAMSRD 733

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+  L L  ++   
Sbjct: 734 VAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDEHGVA 793


>gi|254239878|ref|ZP_04933200.1| DNA ligase [Pseudomonas aeruginosa 2192]
 gi|126193256|gb|EAZ57319.1| DNA ligase [Pseudomonas aeruginosa 2192]
          Length = 794

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/650 (33%), Positives = 340/650 (52%), Gaps = 50/650 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+ P
Sbjct: 5   QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW--------QKKDDNSI 126
             ++ G    +  +V H IP LSL   +  +DL  F  R+                   +
Sbjct: 62  TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEII 185
            ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P  L     PEI+
Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G G
Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+V+
Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV + 
Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  + NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R  D
Sbjct: 362 GVTVFNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410

Query: 425 AQPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           AQ    P  CP+C S V R          ++    A +RC G L+C AQ  + + HFVSR
Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++           +  PAD++TL         ++  + GF ++S  NL
Sbjct: 471 RAMDIDGLGDKIVEQLVDR----GLVASPADLYTLT------YEQVFELEGFAELSTNNL 520

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  ++ +        
Sbjct: 521 LTAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             +P VG  +A  I  F+ +  N   +  L         + E  V++E  
Sbjct: 573 --LPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAEFA 620



 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 14/180 (7%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL  FI  L I  + A  A  LA  + S     +           DWL L +V  + +  
Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA----------DWLDLRQVERLPERA 673

Query: 609 AQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
           A+++ +F+  P N+    A+EA L+E         K V    +  +  V TGTL+ + R 
Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGLPLAGQTWVLTGTLEAMSRD 733

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++E+  L L  ++   
Sbjct: 734 VAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDEHGVA 793


>gi|313681943|ref|YP_004059681.1| DNA ligase, nad-dependent [Sulfuricurvum kujiense DSM 16994]
 gi|313154803|gb|ADR33481.1| DNA ligase, NAD-dependent [Sulfuricurvum kujiense DSM 16994]
          Length = 676

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/701 (29%), Positives = 350/701 (49%), Gaps = 57/701 (8%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
            +++  +   YY    PI  D EYD L  +  A  H  P    S   + P  ++G     
Sbjct: 10  VEQLKKYSYHYYVLDDPITTDEEYDILYHKVVAYEHEHPSEIIS---DSPTQRVGDVPQD 66

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
              K  H     SLE +++ E+L  ++ RI +         + F  EPK DG  + + Y+
Sbjct: 67  KFDKAQHLSRMWSLEDLFDREELETWVNRITK-----GYGDVRFYCEPKFDGASLNLIYD 121

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
           KG  V A  RGDG  GEDV+   + I +IP  L +     IE+RGEV I K DF  +N E
Sbjct: 122 KGVLVQAITRGDGVEGEDVTQNAKTIQSIP--LRIEYKGRIEIRGEVVIFKEDFEKINLE 179

Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
               G   +ANPRNAA+G LR+L+     +R L F  +G+G  + +  K   E ++ +  
Sbjct: 180 RSRNGESLFANPRNAAAGSLRQLDTRITASRRLVFMPYGIGANT-LEIKNLSERMEWVYG 238

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           LGF   +      +   I ++Y+EM+  R      +DG+V KVD  ++Q +LG   ++PR
Sbjct: 239 LGFRNPHMTHLCESADQIETFYHEMRVERDNFAMLLDGMVIKVDSIAVQDELGYTVKNPR 298

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W  ++KF   +  T L ++ +Q+GR+G++TPVA +EPV+I G  +  +TLHN D I+   
Sbjct: 299 WAAAYKFPAIEKLTTLKEVIMQVGRSGVVTPVAIVEPVDIEGVTVERSTLHNFDEIER-- 356

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                    +DIR+GD+V++ R+G+VIPK+V +I  ER    Q    P+ CP+C S ++ 
Sbjct: 357 ---------KDIRIGDKVIILRSGDVIPKIVKVITAERTGSEQVIPRPTQCPVCGSELL- 406

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
                     A  +C   + C A+ +  + +F S+   NI+GLG + ++        A  
Sbjct: 407 -------DEGALIKCQN-MGCEARVVNSIIYFASKQCLNIDGLGDKIVEALHS----AGM 454

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           +   +D+F L   Q  S        GF +    NL D+I   +     RFI +LGI H+G
Sbjct: 455 VHEVSDLFGLTMDQLLSLE------GFKEKKSRNLLDAIAAAKGCDCWRFINALGIEHIG 508

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              +++L   + +            A +      ++ +   G  + ++I+EF +   N  
Sbjct: 509 EVASKTLCGAFGT------------AFDRSSREEILALEGFGGEMVESILEFVRV--NSE 554

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            +E L   ++P+     +   +  + K +V TG++  + R   +  + +LGA V++ +S+
Sbjct: 555 KIERLRSILNPAAPVKIEAAENPFKGKSVVITGSMS-VPRDHIKVMLEELGAKVASSVSK 613

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           KTD ++ G++ G+K +KA +LGV ++ E +F  + +  ++ 
Sbjct: 614 KTDYVVYGEDAGNKYDKAVELGVTLLTESEFREMCEAGDSA 654


>gi|282854737|ref|ZP_06264072.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
 gi|282582319|gb|EFB87701.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
 gi|314982008|gb|EFT26101.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA3]
 gi|315090823|gb|EFT62799.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA4]
          Length = 740

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/746 (28%), Positives = 341/746 (45%), Gaps = 74/746 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P  +
Sbjct: 21  RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77

Query: 78  IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G          V H    LSL+ ++  ++L ++I+R+     K  +    F  E KIDG
Sbjct: 78  VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             + + Y  G+ V  A RGDG  GEDV+A +R I  IP+ L   ++P ++EVRGEV+   
Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN  ++  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G         Q
Sbjct: 194 ADFADLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
                K+   G PV+   +       +  +       R    + IDG+V KVD+ SLQ++
Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGESRDEASHQIDGVVVKVDDVSLQRK 313

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  ATLH
Sbjct: 314 LGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMATLH 373

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P  C
Sbjct: 374 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMPDHC 422

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +  + N          RC     C +Q  ER+    SR A +IE LG +     
Sbjct: 423 PSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAAIAL 477

Query: 495 FKSED---------------PAFSIRIPADIFTLQRRQQT-------------------- 519
              E+                   +   A +F LQ                         
Sbjct: 478 TDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPWQLE 537

Query: 520 ---STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
               T            +   ++D + K ++  L R + +L IRHVG   AR+LA ++ S
Sbjct: 538 PYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATHFGS 597

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +   +     +A           V  VG+IIA+++  +++   +   +           
Sbjct: 598 VEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGVRMA 647

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N GS
Sbjct: 648 DDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGS 707

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYN 722
           K  KA+ LG  I++E  F +LL+   
Sbjct: 708 KETKARDLGRPILDEAGFRYLLENGP 733


>gi|314923733|gb|EFS87564.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL001PA1]
 gi|315104373|gb|EFT76349.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA2]
 gi|327328187|gb|EGE69956.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL103PA1]
          Length = 740

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/746 (28%), Positives = 341/746 (45%), Gaps = 74/746 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P  +
Sbjct: 21  RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77

Query: 78  IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G          V H    LSL+ ++  ++L ++I+R+     K  +    F  E KIDG
Sbjct: 78  VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             + + Y  G+ V  A RGDG  GEDV+A +R I  IP+ L   ++P ++EVRGEV+   
Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN  ++  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G         Q
Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
                K+   G PV+   +       +  +       R    + IDG+V KVD+ SLQ++
Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGESRDEASHQIDGVVVKVDDVSLQRK 313

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  ATLH
Sbjct: 314 LGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMATLH 373

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P  C
Sbjct: 374 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMPDHC 422

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +  + N          RC     C +Q  ER+    SR A +IE LG +     
Sbjct: 423 PSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAAIAL 477

Query: 495 FKSED---------------PAFSIRIPADIFTLQRRQQT-------------------- 519
              E+                   +   A +F LQ                         
Sbjct: 478 TDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPWQLE 537

Query: 520 ---STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
               T            +   ++D + K ++  L R + +L IRHVG   AR+LA ++ S
Sbjct: 538 PYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATHFGS 597

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +   +     +A           V  VG+IIA+++  +++   +   +           
Sbjct: 598 VEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGVRMA 647

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N GS
Sbjct: 648 DDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGS 707

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYN 722
           K  KA+ LG  I++E  F +LL+   
Sbjct: 708 KETKARDLGRPILDEAGFRYLLENGP 733


>gi|15835041|ref|NP_296800.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg]
 gi|270285206|ref|ZP_06194600.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg]
 gi|270289225|ref|ZP_06195527.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Weiss]
 gi|301336602|ref|ZP_07224804.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum MopnTet14]
 gi|13626415|sp|Q9PKP2|DNLJ_CHLMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|7190466|gb|AAF39279.1| DNA ligase [Chlamydia muridarum Nigg]
          Length = 660

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/699 (32%), Positives = 371/699 (53%), Gaps = 51/699 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
           +L  E+  HD  YY   +P I D  YD   R    I    P+      P  P   +G   
Sbjct: 11  ALCTELIEHDRRYYVLDRPTISDYSYDMKMRELQKIEAQHPEWKV---PWSPTIYLGDRP 67

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           +     V HS P +S+  ++++E+L +F +R  +           ++LE KIDG  + IR
Sbjct: 68  SGQFPVVPHSHPMVSIANVYSLEELEEFFSRTEKLLGYFP----TYSLELKIDGIAVAIR 123

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE   F  A  RG+G  GED++A +  I ++P  L  + PE +EVRGEV++S   F  LN
Sbjct: 124 YENRTFAQALSRGNGVKGEDITANVSTIRSLPMTLPQDAPEEVEVRGEVFLSYQAFEKLN 183

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
                 G+  +ANPRNAA G L+ L+  +   R L+  ++GL    E      +E L   
Sbjct: 184 ICQREQGKLEFANPRNAAGGTLKLLSSREAAKRNLDLSIYGLITNREEH--SHFENLGLC 241

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
              GFP+    +Q  T   ++    E++ +RS LP  IDG+V KVD  + Q +LG  ++ 
Sbjct: 242 AHWGFPIAGMPKQCRTKEEVIERIREVEGMRSRLPMAIDGVVVKVDSVAEQHRLGLTSKH 301

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
            RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+NED I+ 
Sbjct: 302 YRWAIAYKYAPERAETILQDITVQVGKTGILTPVAELTPVLLSGSRVSRASLYNEDEIEK 361

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD V V++ GE+IPK+V I + +R PD++P+  PS CP+C + V
Sbjct: 362 -----------KDIRIGDSVYVEKGGEIIPKIVGINLAKRSPDSKPWKMPSLCPMCHNPV 410

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           +++          + RCT  L C    LE++  F S+ A NI+ LG++ +   F+     
Sbjct: 411 IKER--------VSVRCTNPL-CLGGMLEKICFFASKGALNIDHLGEKVIAKLFE----M 457

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             IR  +D+F L           + + GF D SV NL  SI   + ++L+RF+ +L I  
Sbjct: 458 GLIRSCSDVFALTENDL------KQVPGFKDRSVHNLLASIAGAKEVTLDRFLTALSIPF 511

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG+  A +LA ++ +     +               L+ +  +G  +A +I++F+    N
Sbjct: 512 VGSSGAIALADHFGTLDKVMKA----------SLDELLSIEGIGQKVAASIIDFFSKTEN 561

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           +  +   ++E+   I   + +  + ++ K  V TGTLQ++ R +A+E +  LG  +S+ +
Sbjct: 562 VEEI-CRMQELGVRILPKQVDRWAPLQGKIFVLTGTLQEMTRLQAEERIRSLGGKISSSV 620

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S+ T  ++VG   GSKL+KAQ+LGV+++ E   L +L Q
Sbjct: 621 SKNTYAVVVGREAGSKLKKAQELGVQVLEESDLLKILNQ 659


>gi|77458028|ref|YP_347533.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf0-1]
 gi|123731132|sp|Q3KFB2|DNLJ_PSEPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77382031|gb|ABA73544.1| DNA ligase [Pseudomonas fluorescens Pf0-1]
          Length = 785

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/626 (33%), Positives = 333/626 (53%), Gaps = 48/626 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A+  +  L  E+  H+  Y+   +P I D+EYD L     A+  A P+L  S   + 
Sbjct: 1   MTAAKDRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+R+F  R+         +      ++ 
Sbjct: 58  PTQRVGSVALTAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPAGDLFGGGAAVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y+ G  V  A RGDG +GED+S  +R +  IP  L     P  +E
Sbjct: 118 YSCEPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +G+G+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   +      LQ+++  G P+++ ++ A      + YY ++   R++L Y+IDG+V+K
Sbjct: 238 VSHDISDTHIGNLQQLKAWGMPISHELKLAKGIGECLDYYRDIGERRNSLAYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNSIADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             + NATLHN D +  L            + +GD V+++RAG+VIP+VV +++  R  DA
Sbjct: 358 VTVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVMERRPEDA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V R          +T    A +RC G LAC AQ  + + HFVSR 
Sbjct: 407 RPVQIPESCPVCGSHVERTQLVKRSKGKETISEGAVYRCVGRLACGAQLKQAIIHFVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++           +  PAD++ L+         I ++ GF +VS   L 
Sbjct: 467 AMDIEGLGDKSVEQLVDE----GLVSSPADLYALK------FEDIVDLEGFAEVSSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +   L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +         
Sbjct: 517 AAIEDSKKPGLARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQVLTY--------- 567

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAV 625
            +P +G  +A  I  F+++  N   +
Sbjct: 568 -LPDIGLEVAHEIHSFFEDAHNRQVI 592



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 16/186 (8%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
               + +L  F+  L I  VG   A+ LA  + S +             N DWL + +  
Sbjct: 611 EFAASTTLGGFLDKLHIPSVGPGGAQKLADKFESLEGVM----------NADWLDMRQA- 659

Query: 603 LVGDIIAQAIVEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
            + +  A ++ EF+  P +    E     L           +      +  +  V TG +
Sbjct: 660 -LPEKQANSVREFFALPEHRQLAEDAEKQLRDFGMHWQSEKKVVEGLPLAGETWVLTGKV 718

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + R  A+E++  LGA V+  +S KT  ++ G   GSKL KA +LGVK+M+EE F+  L
Sbjct: 719 ELMSRDVAKEHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVMDEEAFIAFL 778

Query: 719 QQYNTT 724
           + +  +
Sbjct: 779 KGHGIS 784


>gi|242309547|ref|ZP_04808702.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter pullorum
           MIT 98-5489]
 gi|239524118|gb|EEQ63984.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter pullorum
           MIT 98-5489]
          Length = 648

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/696 (32%), Positives = 362/696 (52%), Gaps = 59/696 (8%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
           + ++     YY    PI  D EYD L  +        P+       + P  ++G  +  S
Sbjct: 11  KTLNLWAKHYYILDDPIASDEEYDTLYHQIKEFEAKNPNQIAK---DSPTQRVGDNILES 67

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
             K  H     SLE I++ ++L+++I R+ +        ++ FT++PK DG  + + YE 
Sbjct: 68  FSKSEHIERMWSLEDIFDTQELQEWINRVSK------GENLLFTIDPKFDGASLNLLYEN 121

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           GK   A  RGDG  GE+V+   + I +IP  LS+   + IE+RGE  I+KNDF  LN E 
Sbjct: 122 GKLQKATTRGDGFIGENVTQNAKTIQSIP--LSIPYTDRIEIRGECVIAKNDFERLNQER 179

Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
           +  G   +ANPRNAA+G LR+L+      R L F   G+G  + I     +E++QK+R  
Sbjct: 180 LENGESLFANPRNAAAGSLRQLDSKITAKRKLQFIPWGVGFCT-IEENSFFELMQKIRSF 238

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF  +   +       I   Y  + S R + P  +DG+V ++D  +LQK LG   ++PR+
Sbjct: 239 GFLTSPFSKLCKNLQEIEESYQNLISKRDSYPIMLDGMVIRIDSIALQKNLGFTIKAPRF 298

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             ++KF   +   ++LDI +Q+GRTG++TPVA LEPV I GA +  ATLHN D I+    
Sbjct: 299 ACAYKFPAIEKKAKILDITLQVGRTGVVTPVAILEPVMIEGAKVARATLHNFDEIRK--- 355

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   +DI + D V++ R+G+VIPK++  + + R    +    P+ CPIC S ++ +
Sbjct: 356 --------KDILINDSVILIRSGDVIPKIIKSLPSLRDGTQKKCEIPTHCPICGSELLIE 407

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                       +C   L+C A+    L HF+S+ A NI+GLGK+ +D  F+       I
Sbjct: 408 E--------KLIKCQN-LSCKARLKNSLIHFISKKALNIDGLGKRIIDLLFERGK----I 454

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
               DIF+LQ              GF D  + N+ ++I + + I L RFI +LGI H+G 
Sbjct: 455 TKIEDIFSLQYEDLEGLE------GFKDKKIHNILNAIKESKGIDLWRFINALGIEHIGE 508

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             ++ LA  +             +      +   I +   G+ +A ++VEF     N   
Sbjct: 509 GASKKLANTFG------------LEFCQKGFEDFITLDGFGEEMANSLVEFCH--INQER 554

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           ++ LL  ++P   +  ++ ++ +  K  V TGTL + +R   QE +  LGA VS+ +S+K
Sbjct: 555 IKNLLNILTPKTTQTPQSTTN-LSGKTFVITGTLSQ-KRESYQEILESLGAKVSSSVSKK 612

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           TD ++ G+  GSKL KAQ+LGVKI++E+ F  L+++
Sbjct: 613 TDFLLCGEEAGSKLTKAQELGVKILDEKDFWELIKE 648


>gi|314966144|gb|EFT10243.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA2]
          Length = 740

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/746 (28%), Positives = 341/746 (45%), Gaps = 74/746 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P  +
Sbjct: 21  RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77

Query: 78  IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G          V H    LSL+ ++  ++L ++I+R+     K  +    F  E KIDG
Sbjct: 78  VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             + + Y  G+ V  A RGDG  GEDV+A +R I  IP+ L   ++P ++EVRGEV+   
Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN  ++  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G         Q
Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
                K+   G PV+   +       +  +       R    + IDG+V KVD+ SLQ++
Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGESRGEASHQIDGVVVKVDDVSLQRK 313

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  ATLH
Sbjct: 314 LGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMATLH 373

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P  C
Sbjct: 374 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMPDHC 422

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +  + N          RC     C +Q  ER+    SR A +IE LG +     
Sbjct: 423 PSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAAIAL 477

Query: 495 FKSED---------------PAFSIRIPADIFTLQRRQQT-------------------- 519
              E+                   +   A +F LQ                         
Sbjct: 478 TDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPWQLE 537

Query: 520 ---STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
               T            +   ++D + K ++  L R + +L IRHVG   AR+LA ++ S
Sbjct: 538 PYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATHFGS 597

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +   +     +A           V  VG+IIA+++  +++   +   +           
Sbjct: 598 VEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGVRMA 647

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N GS
Sbjct: 648 DDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGS 707

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYN 722
           K  KA+ LG  I++E  F +LL+   
Sbjct: 708 KETKARDLGRPILDEAGFRYLLENGP 733


>gi|313125027|ref|YP_004035291.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551]
 gi|312291392|gb|ADQ65852.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551]
          Length = 694

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/720 (32%), Positives = 363/720 (50%), Gaps = 56/720 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+E+LS E A +E   L + +  HD  YY  + P++ D  YDAL  R   +  AF   
Sbjct: 24  FEPVESLSAEAAEREARLLREAVREHDHRYYVAADPLVADRTYDALFNRLQELEDAFD-- 81

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              +D + P  ++GGE    L  V H  P LS+++     D+R F  R+           
Sbjct: 82  --LDDESSPTRRVGGEPLDELDTVEHVAPMLSIDQSVEAADVRDFDRRVRE-----AVGE 134

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  EPK DG  + + YE G++V AA RGDG  G+DV+A +R I +IP  L  + P+ +
Sbjct: 135 VRYVCEPKFDGLSVEVVYEDGEYVRAATRGDGERGDDVTAQVRTIRSIPLRLRGDYPDFL 194

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
            VRGEVY+ ++ F  LN E I    +P+ANPRNAA G LR+L+P+    R L+ F + + 
Sbjct: 195 TVRGEVYMPRDAFQELNRERIEADEEPFANPRNAAVGTLRQLDPSVTADRPLDCFFYDVL 254

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             S++  + Q   L ++   G   N+ V       G ++Y +E+ + R  L Y+IDG V 
Sbjct: 255 DASDV-PETQTATLSRLDSWGLRTNDRVESVADIDGAIAYRDELMAAREDLNYEIDGTVI 313

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    ++QLGE +RS RW  ++KF  +   T + D+ +Q+GRTG LTPVA L+PV++G
Sbjct: 314 KVDRRDQREQLGETSRSVRWAFAYKFPARSEVTTMTDVVVQVGRTGRLTPVALLDPVDVG 373

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+LHN + I+ L            + +GD V +KRAG+VIP V +++       
Sbjct: 374 GVTVSRASLHNPEEIERL-----------GVNIGDEVRIKRAGDVIPDVEEVVEK---HS 419

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              F FP  CP+C S V R+             CTGGL C AQ +  + H+  R A +IE
Sbjct: 420 EGTFDFPEECPVCGSPVNRE--------GPLAYCTGGLTCEAQLVRAVDHYAMRGALDIE 471

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG ++++           I    D++ L+R +         + G+G  S  NL   I  
Sbjct: 472 GLGGERVEQLVDE----GLIEGLPDLYRLERDEL------SELEGWGKTSADNLVTEIEA 521

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++  L  F+  LGI  VG   AR+LA+ + S           +    D           
Sbjct: 522 TKSPELSSFLVGLGIPEVGGSTARNLARAFGSLDAVMDASVEELEEVEDV---------- 571

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G  +A+ I EF+    N  A+ A ++ +       E     E++    VFTG+L  + R 
Sbjct: 572 GPTVAEKIREFFDTESNRKAI-AEMRSLGVEPETAETAGGDELDGLTFVFTGSL-AVTRG 629

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            AQE V   GA  ++ +S  TD +++GDNPG SK + A    V +++E++F  LL +   
Sbjct: 630 DAQELVQAHGANATSSVSGNTDYLVIGDNPGQSKRDDAAANDVPVLDEDEFAELLAEKGI 689


>gi|83319601|ref|YP_424672.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|123740036|sp|Q2SRE1|DNLJ_MYCCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83283487|gb|ABC01419.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 668

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/713 (32%), Positives = 390/713 (54%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S EQ    ++ L+++++     YY    P + D+EYD   +   ++ + +P+   S   
Sbjct: 1   MSKEQILLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG ++    K+TH  P LSL  ++N ++  +F T++ +     ++    +  E
Sbjct: 58  DSPSQKVGGTVSEKFLKITHKTPMLSLGNVFNFDEFLEFNTQVSKVSNNLNN---EYVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+  +R I +IP  L ++  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGVLVSAATRGNGVIGEDVTTNVRTIKSIP--LKISKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+SK +F  +N + +      + NPRNAA+G LR+L+   +  R L+ F++    + +  
Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYI-SDDSP 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QYE + K+  LGF  N           I +Y ++  ++++ L Y IDG+V+K+++ +
Sbjct: 232 NLNQYESILKLNQLGFKTNKETMLCKNLDQIKAYIDKYTNLKNDLDYQIDGIVFKINDKN 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  ++ P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV + GA I+ 
Sbjct: 292 LQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISA 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E   + + F  
Sbjct: 352 ATLNNAEYIKS-----------KDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEVFQP 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
             +CP C S + ++ N           C    +CS + L  L+HF SR+A NI  LG + 
Sbjct: 401 ILYCPNCHSLLEKNENE------VDQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDRS 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+  F  E     I+  +DI+ L+  +     +I  I  FG  S  NL DSIN  +N SL
Sbjct: 454 LEILFNLEI----IQNISDIYKLEEYK----DQILAIENFGLKSYLNLIDSINMSKNNSL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRH+G++ A+ LA+ Y +  N  +            +  LI++  +G+ +A 
Sbjct: 506 EKVLFGLGIRHIGSKTAKILARKYQNIDNLMKA----------SYDELIQINSIGESLAL 555

Query: 611 AIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I+++++   N+  +       ++ +    + N  S I NK  V TGTL +  R + +  
Sbjct: 556 SIIDWFKIEDNLKLINELKSFNINFNYLGAKINSDSIIANKTFVITGTLTRP-REEFKTL 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +      +S  +S++TD ++ G+N GSKLEKA++LGV I++E+QF  LL+   
Sbjct: 615 IENNAGKISGSISKQTDYLLAGNNVGSKLEKAKKLGVIIIDEQQFFDLLKSEK 667


>gi|185178794|ref|ZP_02554752.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188024241|ref|ZP_02569990.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188518556|ref|ZP_03004016.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|209554205|ref|YP_002284543.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225551582|ref|ZP_03772528.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|254781448|sp|B5ZAV3|DNLJ_UREU1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|184209414|gb|EDU06457.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188018900|gb|EDU56940.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188997873|gb|EDU66970.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|209541706|gb|ACI59935.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225379397|gb|EEH01762.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
          Length = 673

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/712 (30%), Positives = 369/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD   R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG ++    KV H  P LSL   ++  DLRKF        Q    +   + +EPK
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQ----DNQNASVDLKGYVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYESI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+ +      I+  AD++ LQ+ ++        I    D S +NL +SIN  +  SLE
Sbjct: 456 NKFYDAN----LIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ LAK + +                 ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFGELTNVDACGEKAALS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI------ENKKLVFTGTLQKIQRHK 665
           ++ ++ +  N+  V  L +         +      I      +NK  V TG+   I R +
Sbjct: 559 LINWFNDDHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKII-ENEFWK 668


>gi|222474841|ref|YP_002563256.1| DNA ligase (ligA) [Anaplasma marginale str. Florida]
 gi|255003944|ref|ZP_05278745.1| DNA ligase (ligA) [Anaplasma marginale str. Virginia]
 gi|254781539|sp|B9KHN8|DNLJ_ANAMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222418977|gb|ACM49000.1| DNA ligase (ligA) [Anaplasma marginale str. Florida]
          Length = 673

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/710 (35%), Positives = 403/710 (56%), Gaps = 44/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQAR+ L+ L  ++ +HD  Y+    P + D +YD L +    +   FPD+ + +D   
Sbjct: 2   LEQARRRLAGLNAKLRHHDMLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDD--- 58

Query: 74  PLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             + +G  +++    KV H  P LSLE  + ++D+ KFITR+ RF + + D+ +  + E 
Sbjct: 59  YADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG   +  Y  GK    A RG+GH GED++     +  +P  L  + PE++EVRGE+Y
Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQL-DSAPEVLEVRGEIY 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +   DF  L       G   +ANPRNAA+G +R+LN   +  R L++  +    ++    
Sbjct: 178 MHHEDFEKL------RGSCNFANPRNAAAGSIRQLNQKIVEERNLSYVAYSAVNST---F 228

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E+L+++   GF  N  V   +     +++YN + + RS L YDIDG+VYKV+  + 
Sbjct: 229 ATQQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSINF 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK LG   +SPRW I+HKF   +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A
Sbjct: 289 QKLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN + I+            +D+R+GD V+VKRAGEVIP+VVD+    R    Q F FP
Sbjct: 349 SLHNLNEIER-----------KDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C S++ R+          A RC   L+C AQ LER+KHFVSRD  NI GLG +Q+
Sbjct: 398 SHCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQI 451

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +FF         I   ADIF+L+ +        E+  G+G+ SV NL  +I     + L 
Sbjct: 452 EFF----CNHGLIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLS 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FIF+LGIR +G   A+ +A++Y SY+N+ Q +  +      +    +++  +G+    +
Sbjct: 506 NFIFALGIRFIGVGAAKLIAEHYRSYKNWHQAMLALT-----ETHDTVQIRGLGEKSISS 560

Query: 612 IVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +  F+    N+  +E+L  +++        +  SS I  K +VFTGTL+ + R +A+   
Sbjct: 561 LKAFFSVQGNLEVLESLSAKLNILDEASPAQRGSSAISGKTVVFTGTLESMSRTEAKLQA 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             LGA V+  +S  T +++ G NPGSK EKA  L V++++E+ ++ +++ 
Sbjct: 621 ESLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVED 670


>gi|315095035|gb|EFT67011.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL060PA1]
          Length = 740

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/746 (28%), Positives = 341/746 (45%), Gaps = 74/746 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P  +
Sbjct: 21  RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77

Query: 78  IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G          V H    LSL+ ++  ++L ++I+R+     K  +    F  E KIDG
Sbjct: 78  VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             + + Y  G+ V  A RGDG  GEDV+A +R I  IP+ L   ++P ++EVRGEV+   
Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN  ++  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G         Q
Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
                K+   G PV+   +       +  +       R    + IDG+V KVD+ SLQ++
Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGESRDEASHQIDGVVVKVDDVSLQRK 313

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  ATLH
Sbjct: 314 LGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMATLH 373

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P  C
Sbjct: 374 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMPDHC 422

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +  + N          RC     C +Q  ER+    SR A +IE LG +     
Sbjct: 423 PSCGAELAYEKNG-----DKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAAIAL 477

Query: 495 FKSED---------------PAFSIRIPADIFTLQRRQQT-------------------- 519
              E+                   +   A +F LQ                         
Sbjct: 478 TDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPWQLE 537

Query: 520 ---STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
               T            +   ++D + K ++  L R + +L IRHVG   AR+LA ++ S
Sbjct: 538 PYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATHFGS 597

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +   +     +A           V  VG+IIA+++  +++   +   +           
Sbjct: 598 VEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGVRMA 647

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N GS
Sbjct: 648 DDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGS 707

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYN 722
           K  KA+ LG  I++E  F +LL+   
Sbjct: 708 KEIKARDLGRPILDEAGFRYLLENGP 733


>gi|15895931|ref|NP_349280.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824]
 gi|81529669|sp|Q97FQ5|DNLJ2_CLOAB RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|15025704|gb|AAK80620.1|AE007765_2 NAD-dependent DNA ligase [Clostridium acetobutylicum ATCC 824]
          Length = 669

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/708 (29%), Positives = 353/708 (49%), Gaps = 58/708 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L +E++ +   YY    PI+ D EYD        +            P  P N++G
Sbjct: 10  RMQELIEELNKYSYSYYVLDNPIVADKEYDKRYDELVELEEK----TGITYPYSPTNRVG 65

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPK 133
             +     K TH     SL+K  + E++  +  R  +   + + N       + + L  K
Sbjct: 66  DVILKQFQKYTHKSRLWSLDKAQSFEEIIDWHNRNKKAVAEYNSNHEDKLPELKYVLTKK 125

Query: 134 IDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
            DG  I   Y E G  + AA RG G  GED+++  + I +IP  L +    ++EV GE  
Sbjct: 126 FDGLTINCTYDESGVMIKAATRGTGVIGEDITSQAKTIKSIP--LKIKNGSVVEVHGEAI 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251
           ++K  F   N +       P  N RN A+G LR LN  +  R  L+ F + +G       
Sbjct: 184 MTKTAFNEYNKKA----EVPLKNLRNGAAGALRNLNVRETARRNLSAFFYDVGYNEGKAF 239

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K   EM+  ++ +GFPV+  +++ NT   I      +  IRS+L YDIDG+V  +D++  
Sbjct: 240 KSYMEMMNFIKEMGFPVDEYLKECNTIEEINKEIQYVGDIRSSLDYDIDGVVIVIDDYRT 299

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G ++  A
Sbjct: 300 REYLGYTVKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVIVKRA 359

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N D I           G + +++G RV V+R+ +VIP+++ +       +      P
Sbjct: 360 TLNNMDDI-----------GRKKVKIGSRVFVRRSNDVIPEIMGVTEET-EGETNEIEAP 407

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S +V++             C   L+C  Q ++ + HF SR+A NIEG  ++  
Sbjct: 408 TICPYCGSEIVKE--------GVHLFCENTLSCKPQMVKSIVHFASREAMNIEGFSEKTA 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+      +I+  +D++ + + +  S  K      F D   +NL ++I K +   L 
Sbjct: 460 EQLFEK----LNIKSISDLYRITKEELMSLDK------FKDKKASNLINAIEKSKKCDLA 509

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            F++SLGI +VG + A  L K + S++N  +            +  LI V  +G I+A++
Sbjct: 510 SFVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYDELILVQDIGSIVAES 559

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IVEF++  +   ++  L +          + V +    K +V TGTLQ   R   +E + 
Sbjct: 560 IVEFFKQEKIEKSLNELFELGVTPFYEESEVVENAFTGKTVVATGTLQNYSRTAIKEKLE 619

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+KTD +I G+N GSK +KA QLGVKI+ EE+F  L+ 
Sbjct: 620 SLGANVAGSVSKKTDYVIAGENAGSKYDKAVQLGVKILTEEEFEQLIN 667


>gi|325510083|gb|ADZ21719.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018]
          Length = 669

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/708 (29%), Positives = 353/708 (49%), Gaps = 58/708 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L +E++ +   YY    PI+ D EYD        +            P  P N++G
Sbjct: 10  RMQELIEELNKYSYSYYVLDNPIVADKEYDKRYDELVELEEK----TGITYPYSPTNRVG 65

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPK 133
             +     K TH     SL+K  + E++  +  R  +   + + N       + + L  K
Sbjct: 66  DVILKQFQKYTHKSRLWSLDKAQSFEEIIDWHNRNKKAVAEYNSNHEDKLPELKYVLTKK 125

Query: 134 IDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
            DG  I   Y E G  + AA RG G  GED+++  + I +IP  L +    ++EV GE  
Sbjct: 126 FDGLTINCTYDESGVMIKAATRGTGVIGEDITSQAKTIKSIP--LKIKNGSVVEVHGEAI 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251
           ++K  F   N +       P  N RN A+G LR LN  +  R  L+ F + +G       
Sbjct: 184 MTKTAFNEYNKKA----EVPLKNLRNGAAGALRNLNVRETARRNLSAFFYDVGYNEGKAF 239

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K   EM+  ++ +GFPV+  +++ NT   I      +  IRS+L YDIDG+V  +D++  
Sbjct: 240 KSYMEMMNFIKEMGFPVDEYLKECNTIEEINKEIQYVGDIRSSLDYDIDGVVIVIDDYRT 299

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G ++  A
Sbjct: 300 REYLGYTVKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVIVKRA 359

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N D I           G + +++G RV V+R+ +VIP+++ +       +      P
Sbjct: 360 TLNNMDDI-----------GRKKVKIGSRVFVRRSNDVIPEIMGVTEET-EGETNEIEAP 407

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S +V++             C   L+C  Q ++ + HF SR+A NIEG  ++  
Sbjct: 408 TICPYCGSEIVKE--------GVHLFCENTLSCKPQMVKSIVHFASREAMNIEGFSEKTA 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+      +I+  +D++ + + +  S  K      F D   +NL ++I K +   L 
Sbjct: 460 EQLFEK----LNIKSISDLYRITKEELMSLDK------FKDKKASNLINAIEKSKKCDLA 509

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            F++SLGI +VG + A  L K + S++N  +            +  LI V  +G I+A++
Sbjct: 510 SFVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYDELILVQDIGSIVAES 559

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IVEF++  +   ++  L +          + V +    K +V TGTLQ   R   +E + 
Sbjct: 560 IVEFFKQEKIEKSLNELFELGVTPFYEESEVVENAFTGKTVVATGTLQNYSRTAIKEKLE 619

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+KTD +I G+N GSK +KA QLGVKI+ EE+F  L+ 
Sbjct: 620 SLGANVAGSVSKKTDYVIAGENAGSKYDKAVQLGVKILTEEEFEELIN 667


>gi|225550545|ref|ZP_03771494.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225379699|gb|EEH02061.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 673

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/712 (30%), Positives = 369/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD   R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG ++    KV H  P LSL   ++  DLRKF        Q    +   + +EPK
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQ----DNQNASVDLKGYVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYESI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+ +      I+  AD++ LQ+ ++        I    D S +NL +SIN  +  SLE
Sbjct: 456 NKFYDAN----LIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ LAK + +                 ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFGELTNVDACGEKAALS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI------ENKKLVFTGTLQKIQRHK 665
           ++ ++ +  N+  V  L +         +      I      +NK  V TG+   I R +
Sbjct: 559 LINWFNDDHNVSLVNQLQQVGLNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKII-ENEFWK 668


>gi|330808456|ref|YP_004352918.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376564|gb|AEA67914.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 785

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/633 (33%), Positives = 335/633 (52%), Gaps = 48/633 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      +  L  E+  H+  Y+   +P I D+EYD L     A+    P+L  S   + 
Sbjct: 1   MNAVETRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H IP LSL   ++   +R+F  R+                ++ 
Sbjct: 58  PTQRVGSVALSAFSQVRHEIPMLSLGNAFDETTMREFDRRVTEGLDLPMGDLLGGGAAVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186
           ++ EPK+DG  +++ Y+ G  V  A RGDG +GED+S  +R +  IP  L     P ++E
Sbjct: 118 YSCEPKLDGLAVSLLYQDGMLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPLLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEVY+SK  F  LN   +  G K +ANPRNAA+G LR+L+      R L F  +G+G+
Sbjct: 178 VRGEVYMSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +   A      L++++  G P++  ++ A+     + YY ++   R+ LPY+IDG+V+K
Sbjct: 238 VTADIADTHIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNSIASQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             + NATLHN D +  L            + +GD V+++RAG+VIP+VV +I   R  DA
Sbjct: 358 VTVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVITERRPDDA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V R          +T    A +RC G LAC AQ  + + HFVSR 
Sbjct: 407 RPVEIPRQCPVCGSHVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG++ ++           +  PAD++ L         ++ ++ GF ++S  NL 
Sbjct: 467 AMDIEGLGEKSVEQLVDE----GLVGSPADLYALT------FEQVVDLEGFAELSSKNLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  SL RFI++LGI  VG E A+ LA+   S +     +  ++ +         
Sbjct: 517 AAIVDSKKPSLARFIYALGIPDVGEETAKVLARSLGSLERVQAAVPQVLTY--------- 567

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            +P VG  +A  I  F+++P N   ++ LL+  
Sbjct: 568 -LPDVGLEVAHEIHSFFEDPHNRQVIKDLLRHG 599



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 16/187 (8%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
               + +L  F+  L I  VG   A+ LA  + S +          A  N DWL + +  
Sbjct: 611 EFSASTTLGGFLDKLNIPSVGPGGAQKLADKFGSLE----------AVMNADWLDMRQA- 659

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTL 658
            + +  A A+ EF+    N    EA  +++           +            V TG+L
Sbjct: 660 -LPEKQANAVREFFAVAANRQQAEAAEQQLRDFGMHWQSEKKVVEGLPEAGHTWVLTGSL 718

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG+K+++EE F+  L
Sbjct: 719 ELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVVFL 778

Query: 719 QQYNTTL 725
            Q+  T+
Sbjct: 779 SQHGITV 785


>gi|254517673|ref|ZP_05129729.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA]
 gi|226911422|gb|EEH96623.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA]
          Length = 663

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 203/712 (28%), Positives = 355/712 (49%), Gaps = 57/712 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++ +  L  E++ +   YY    P + D +YD        +     +      P  P 
Sbjct: 2   DKKQRIEELVNELNRYAYEYYSLDNPSVSDKDYDKKYDELKKLE----EETNYVLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-----DDNSIFFTL 130
            ++G  +     K TH     SL+K  ++E+L+ +  R  +F ++      D     + L
Sbjct: 58  LRVGDRVLEGFNKYTHKARLWSLDKAQSLEELKDWHNRNLKFIREMNSRGEDLPEPRYVL 117

Query: 131 EPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
             K DG  + + Y E G    AA RG+G  GE+VSA ++ I +IP  L +N  ++ E+ G
Sbjct: 118 TKKFDGLTVNLTYDENGILASAATRGNGEVGEEVSAQVKTIKSIP--LKINNDDLFEIHG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E  ++   F   N         P  N RN A+G LR LN  +   R L+ F + +G    
Sbjct: 176 EAIMTTEAFENYN----KNADVPLKNLRNGAAGALRNLNLKETAKRNLSAFFYDVGYKEG 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   EML  ++  G P+++ +R   T   I    + ++ IR  L YDIDG+V  +D+
Sbjct: 232 EGFKTYEEMLNFIKDKGLPMDDYIRYCTTIEEIEKEIDYIREIRFDLNYDIDGVVIAIDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              ++ +G   + P+W I++KF  ++A+T+L+D++  +GR+G + P A L+P+++ G  +
Sbjct: 292 IRTRELMGYTVKFPKWAIAYKFEAQEATTKLVDVEWNVGRSGRVGPTAILDPIDLAGVTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I+            + +R+G  V V+R+ +VIP+++ ++           
Sbjct: 352 KRATLNNIDDIRR-----------KGVRIGAEVFVRRSNDVIPEIMGVVTESLEGTE-EI 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P  CP C + +V++           + C   L+C  Q ++ + H+ SRDA NIEG  +
Sbjct: 400 NVPEVCPACGAHLVQN--------GVHYFCENTLSCKPQMVKTIVHYASRDAMNIEGFSE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +  +  F+       I+  AD++ LQ+ +     K      FG     NL D++ K ++ 
Sbjct: 452 KTAEQLFEK----LDIKSIADLYKLQKEELLQLDK------FGPKKAQNLLDAVEKSKDC 501

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L RFI+SLGI +VG + A+ L   + S +             +  +  L+ V  VG I+
Sbjct: 502 ELYRFIYSLGIPNVGVKTAKDLVNKFKSLEGLK----------SASFDDLVSVQDVGGIV 551

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ ++EF++  + +  +  LL+         ++ +SS  E K +V TGTLQ   R + + 
Sbjct: 552 AKCVLEFFKEEKAVNTINELLELGVNPKFEEKQIISSPFEGKTVVVTGTLQNYSRGEIKA 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LGA VS  +S+KTD +I G+  GSKL+KA +LGVK++NE++F  ++++
Sbjct: 612 KLELLGAKVSGSVSKKTDFVIAGEEAGSKLDKAIELGVKVLNEDEFEDIIKE 663


>gi|296273134|ref|YP_003655765.1| DNA ligase, NAD-dependent [Arcobacter nitrofigilis DSM 7299]
 gi|296097308|gb|ADG93258.1| DNA ligase, NAD-dependent [Arcobacter nitrofigilis DSM 7299]
          Length = 648

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/702 (30%), Positives = 362/702 (51%), Gaps = 57/702 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + E +     +      YY    P   D EYD L R C A     P L+    PN P  +
Sbjct: 3   QNEYNEKINILISWAIAYYVEDNPQASDEEYDKLSRECLAYEQENPSLSH---PNSPNKR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H     S E ++N  +L  +I R  +      + ++ F  EPK DG 
Sbjct: 60  VGGFVLEGFEKAAHLSRMWSQEDVFNTVELEDWIKRAQKV-----NTNLEFYCEPKFDGA 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G    A  RGDG  GEDV+  ++ I +IP  L +    +IE+RGE+ I K D
Sbjct: 115 SLNLIYENGVLKQAITRGDGSIGEDVTNNVKTIHSIP--LQIKEQSLIEIRGEIVIKKAD 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G + +ANPRNAA+G LR+L+PT    R L F V G+G+ S  F K   E
Sbjct: 173 FEKINEERAKNGEQLFANPRNAAAGSLRQLDPTVTAKRKLFFNVWGIGQHSLDFTK-HSE 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           M++ +  LGF       +  T  GI   Y+++ + R+++   +DG+V K+++   Q++LG
Sbjct: 232 MMEYVYSLGFVHPPMTTKTTTVEGIEELYHKIIASRNSITMMLDGMVIKINDIETQEELG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + PRW  ++KF   + +T + DI  Q+GRTG++TPVA +EP  I G+ +  A+LHN 
Sbjct: 292 YTVKFPRWSCAYKFPAVEKTTTIKDIIQQVGRTGVITPVAVVEPTLIDGSTVERASLHNY 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+R+ D+V++ ++G++IPK+  + V  R    +  + P+ CP 
Sbjct: 352 DEIARL-----------DLRINDQVIIIKSGDIIPKITKVFVERRDGTQEKITRPTLCPK 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S ++ +            +C   L C A  +  + +F S++  NI+GLG + ++   +
Sbjct: 401 CRSELLDEGT--------LIKCQN-LDCPAIIVNSIIYFASKNCMNIDGLGNKIVETLVR 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I    D+++L+          EN+ GF +  + NL ++I K +  SL R I +
Sbjct: 452 EKK----IYDILDLYSLKYEDL------ENLEGFKEKKINNLLNAIEKTKANSLHRVINA 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   ++ +   +             +   N D+ SL+ +  +G+ +A + VEF 
Sbjct: 502 LGIEHIGEVASKQICLEFG------------LDVVNIDFDSLVALDGIGEQMANSFVEFM 549

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   V  L+  ++P++    +   +  + K +V TGT+  + R + ++ +  LGA 
Sbjct: 550 RV--NEELVSKLIATINPTVEEKIEVSENAFKGKTVVITGTMS-VSRGEVKKQLEALGAK 606

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           VS+ +S+KTD +I G++ GSK +KA +L VK +NEE+   ++
Sbjct: 607 VSSSVSKKTDYVIYGEDAGSKYDKAIELNVKTINEEEMNNMI 648


>gi|257053690|ref|YP_003131523.1| NAD-dependent DNA ligase LigA [Halorhabdus utahensis DSM 12940]
 gi|256692453|gb|ACV12790.1| DNA ligase, NAD-dependent [Halorhabdus utahensis DSM 12940]
          Length = 693

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/722 (33%), Positives = 368/722 (50%), Gaps = 53/722 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
              ++AL  E A ++   L + I YHD  YY  + P+I D  YDAL  R   +   F   
Sbjct: 19  FESVDALDAESAHEQAEQLREAIRYHDHQYYVENDPVIGDRTYDALFARLQDLEDGFG-- 76

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ--KKDD 123
              +  N P  ++GGE    L  V H  P  S+++   + ++R+F  R+ R       D 
Sbjct: 77  --LDRENSPTQRVGGEPLDKLASVEHVAPMQSIDQGGEVTEVREFDERVARGMGDAGFDP 134

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
           +   +  EPK DG  + I YE G +  AA RGDG  GEDV+  +R IP++P  L  + P+
Sbjct: 135 DERTYFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRTIPSVPGRLRGDYPD 194

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
            + VRGEVYI  + F A N E I  G  P+ANPRNAA+G LR+L+P+    R L  F  G
Sbjct: 195 TLAVRGEVYIPTDAFQAYNRERIERGDDPFANPRNAAAGTLRQLDPSITAERPLAIFFFG 254

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +   S +  +   E+ +++   G  V +   + ++    + Y + +   R  LP++IDG+
Sbjct: 255 VLDAS-VEFEQNSEVYERLPEWGLRVTDLAEEVDSIEDAIDYRDRLLDERDDLPFEIDGV 313

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K+++ +    LG  AR+PRW  ++KF  +   T + D+ +Q+GRTG LTPVA ++PV 
Sbjct: 314 VIKLNDRAACDALGSTARAPRWAFAYKFPARTERTTIRDVVVQVGRTGRLTPVALMDPVE 373

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG +++ A+LHN   I+ L            + VGD V V+RAG+VIP+V +++     
Sbjct: 374 VGGVMVSRASLHNPAEIERL-----------GVDVGDEVRVQRAGDVIPEVAEVLDAASD 422

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                F FP  CP+C S V RD             CTGGLAC AQ    + H+ SR   +
Sbjct: 423 GT---FDFPESCPVCDSPVERD--------GPLAFCTGGLACPAQLERAIVHYASRAGLD 471

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG++++         A  +   AD++ L +   TS        G+G  SV NL + +
Sbjct: 472 IEGLGEERVQQLLD----AGLVEELADLYELGQLDLTSLE------GWGMQSVANLQEEL 521

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              R   L+ F+ +L +  +GA  A +LA+ + +++          A  + D   L  V 
Sbjct: 522 EASREPPLDDFLAALNVPSLGAATATALAREFGTFE----------AVMDADREQLQAVD 571

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G  +A  I EF++  RN  A+E LL  V P     E     E++    VFTGTL    
Sbjct: 572 DIGPKVAAEIREFFETERNREAIERLLDHVDPQPYEVEG--GDELDGLTFVFTGTLSNYT 629

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721
           R +AQE V   G   ++ +S  TD ++VG+NPG  K + A    V+I++E++F  LL   
Sbjct: 630 RSEAQELVEVHGGSATSSVSGNTDYLVVGENPGQRKRDDADANDVQILDEDEFEELLAGR 689

Query: 722 NT 723
             
Sbjct: 690 GV 691


>gi|56416472|ref|YP_153546.1| DNA ligase [Anaplasma marginale str. St. Maries]
 gi|81359291|sp|Q5PBN8|DNLJ_ANAMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56387704|gb|AAV86291.1| DNA ligase [Anaplasma marginale str. St. Maries]
          Length = 673

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/710 (35%), Positives = 404/710 (56%), Gaps = 44/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQAR+ L+ L  ++ +HD  Y+    P + D +YD L +    +   FPD+++ +D   
Sbjct: 2   LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDISQYDD--- 58

Query: 74  PLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             + +G  +++    KV H  P LSLE  + ++D+ KFITR+ RF + + D+ +  + E 
Sbjct: 59  YADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG   +  Y  GK    A RG+GH GED++     +  +P  L  + PE++EVRGE+Y
Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQL-DSAPEVLEVRGEIY 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +   DF  L       G   +ANPRNAA+G +R+LN   +  R L++  +    ++    
Sbjct: 178 MHHEDFEKL------RGSCNFANPRNAAAGSIRQLNQKIVEERNLSYVAYSAVNST---F 228

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E+L+++   GF  N  V   +     +++YN + + RS L YDIDG+VYKV+  + 
Sbjct: 229 ATQQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSTNF 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK LG   +SPRW I+HKF   +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A
Sbjct: 289 QKLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN + I+            +D+R+GD V+VKRAGEVIP+VVD+    R    Q F FP
Sbjct: 349 SLHNLNEIER-----------KDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C S++ R+          A RC   L+C AQ LER+KHFVSRD  NI GLG +Q+
Sbjct: 398 SHCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQI 451

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +FF         I   ADIF+L+ +        E+  G+G+ SV NL  +I     + L 
Sbjct: 452 EFF----CNHGLIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLS 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FIF+LGIR +G   A+ +A++Y SY+N+ Q +  +      +    +++  +G+    +
Sbjct: 506 NFIFALGIRFIGVGAAKLVAEHYRSYKNWHQAMLALT-----ETHDTVQIRGLGEKSISS 560

Query: 612 IVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +  F+    N+  +E+L  +++        +  SS I  K +VFTGTL+ + R +A+   
Sbjct: 561 LKAFFSVQGNLEVLESLSAKLNILDEASPAQRGSSAISGKTVVFTGTLESMSRTEAKLQA 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             LGA V+  +S  T +++ G NPGSK EKA  L V++++E+ ++ +++ 
Sbjct: 621 ESLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVED 670


>gi|289581750|ref|YP_003480216.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099]
 gi|289531303|gb|ADD05654.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099]
          Length = 699

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/723 (32%), Positives = 364/723 (50%), Gaps = 50/723 (6%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P E LS ++A +++  L   I  HD  YY  + P+I D  YD L  R   +   F   
Sbjct: 21  FEPPEQLSDDEAEQQVEQLRDAIREHDRRYYVENDPLIADRTYDTLFERLQVLESTFD-- 78

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                P+ P   +GGE   +   V H  P LS+++     D+R+F  R+ R     +  +
Sbjct: 79  --LSHPDSPTRSVGGEPIEAFETVEHEAPMLSIDQSGEEADVREFDERVRR-----EVGA 131

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  EPK DG  +   YE G    A  RGDG  G+DV+   R I ++P+ L  + P+ +
Sbjct: 132 VDYVCEPKFDGVSMEFVYEDGSLQRAVTRGDGREGDDVTRNARTIGSVPQKLHGDYPDFL 191

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
            VRGEV++ K+ F   N E I  G +P+ANPRNA +G +R+L+P  +  R L+ F   + 
Sbjct: 192 AVRGEVFMPKDAFQEHNRERIERGEEPFANPRNATAGTIRQLDPEIVAERPLDVFYFDVL 251

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             SE+      E L++    G  V + V   +     ++Y + M   R  L Y+IDG V 
Sbjct: 252 AASELE-DSHREELERFPEFGLRVTDHVEIVDDIDDAIAYRDRMLEARDDLNYEIDGTVI 310

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+   +++LG  AR  R+  ++KF  +   T + D+ +QIGRTG +TPVA LEPV++G
Sbjct: 311 KVDDRDAREELGRTARHDRYAFAYKFPARAEVTPIADVAVQIGRTGRVTPVALLEPVDVG 370

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+LHN + I             + + +GD V V+RAG+VIP V ++I      D
Sbjct: 371 GVTVSRASLHNPEEI-----------AEKTVAIGDTVRVQRAGDVIPYVEEVIEKGADND 419

Query: 425 -AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               +  P  CP+C S + RD             CTGGLAC AQ    ++++ S    ++
Sbjct: 420 PESHYELPDHCPVCDSAIERD--------GPMAFCTGGLACDAQLRRSIEYYASDGGLDL 471

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++ +         A  +   AD++ L+  + T+        G+GD S  NL   I 
Sbjct: 472 EGLGEKSVRQLVD----AGLVESIADLYELECEELTALE------GWGDTSAENLLSEIE 521

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R   L  F+ +LGI HVG   AR LA+ + +++        +     DD  +L  V  
Sbjct: 522 ASREPPLADFLSALGIPHVGPTTARELAREFGTFE-------AVREAAEDDPAALEGVDD 574

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG+ +A+ I EF+ +  N  AV  +L  VSP     E     E++    VFTG+L  + R
Sbjct: 575 VGETVAETIHEFFASEANAAAVADILAHVSPQESDLESG-GDELDGLTFVFTGSLADVTR 633

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +AQE V   GA  +  +S  TD ++VG+NPG +K E A++  V I++E +F  LL +  
Sbjct: 634 SEAQETVEAHGANATGSVSGNTDYLVVGENPGATKREDAEENDVPIIDESEFRELLAERG 693

Query: 723 TTL 725
             L
Sbjct: 694 IGL 696


>gi|322382981|ref|ZP_08056811.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153004|gb|EFX45464.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 673

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/713 (28%), Positives = 339/713 (47%), Gaps = 62/713 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +EI+ H+  YY   +P I D EYDAL  R   +       + +  PN P  ++GG
Sbjct: 8   MKILIEEINKHNYHYYTLDEPTITDQEYDALYDRLLKLEKE----SGTVLPNSPTLRVGG 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-------NSIFFTLEPK 133
           ++        H     SL+K  +IE L+ +  R+ +     +            F +E K
Sbjct: 64  DILKGFEPHRHRSRLWSLDKAQSIEVLKNWHNRVQKLVNDYNSKNPSTPLPEPSFAVELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + Y++G  V A+ RG+G  GE + A ++ I ++P  +      +IEV+GE  +
Sbjct: 124 FDGLTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVPLEIPYKE-GLIEVQGEGMM 182

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +     N         P  N RNAA+G LR LNP     R L  F + +G +      
Sbjct: 183 LLSVLDQYNQTAAE----PLKNARNAAAGALRNLNPKVTAERRLTAFFYNVGFSDRKQFM 238

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              EM+  ++   F VN  V+  NT   +     +++  R    + IDG V KV +   +
Sbjct: 239 NHQEMIAFLKENHFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDFLIDGAVIKVTDIRTR 298

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + PRW I++KF  ++ +T L  +  ++GRTG +TPVA++EPV + G  + N T
Sbjct: 299 EVLGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAKVEPVELAGVTVQNCT 358

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N   I+  +             +G  V ++R+ +VIP+++  +  E   D +   +P 
Sbjct: 359 LNNIGDIERKNLKHA---------LGSLVYIRRSNDVIPEILGKVTEE--IDGEEIKYPE 407

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + + +          A   C   L C  Q + R+ HF SRDA +IE       +
Sbjct: 408 HCPACGTELEQR--------GAHLFCPNRLGCKPQLIGRITHFASRDAMDIETFSVMTAE 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++       +R PAD++ L          I  +  FG+    NL D+I K +   L  
Sbjct: 460 QLYQQ----LDVRDPADLYDLT------YDDIIQLPRFGEKKANNLLDAIEKSKERDLSS 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+F+LGI + G    + LA+++ S       +             LI +P VG I+A +I
Sbjct: 510 FLFALGIPNTGKTTTKVLAEHFRSLDKVMDAV----------VEELIALPDVGGIVADSI 559

Query: 613 VEFYQNPRNICAVEAL-----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
             F+++P  I ++  +       ++    G+ E +       K +V TGTL  + R +A 
Sbjct: 560 YTFFRDPIMIESIRRMKKAGVQAQMEAEEGKAEIDPGHPFYGKTIVLTGTLSSMSRDEAA 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN-EEQFLFLLQ 719
           + +  LGA V+  +S+KTDI+I G+N GSKL KA+QLG+++++ E++ L LL 
Sbjct: 620 KKLESLGAKVTGSVSKKTDIVIAGENAGSKLAKAEQLGIRVIDNEDELLHLLD 672


>gi|42561289|ref|NP_975740.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|81400468|sp|Q6MSK8|DNLJ_MYCMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|42492787|emb|CAE77382.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301320499|gb|ADK69142.1| DNA ligase (NAD(+)) [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 668

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/713 (32%), Positives = 389/713 (54%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++A   ++ L+++++     YY    P + D+EYD   +   ++   +P+L  S   
Sbjct: 1   MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLETLYPELITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG ++    K+TH  P LSL  +++ ++   F T+I +     D+    +  E
Sbjct: 58  DSPSQKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQISKISNTLDNQ---YVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+   R I +IP  L ++  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINARTIKSIP--LKISKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+SK +F  +N + +      + NPRNAA+G LR+L+   +  R L+ F++    + +  
Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYI-SDDSN 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QY+ + K+  LGF  N           I +Y ++  ++++ L Y IDG+V+K+++ +
Sbjct: 232 NLTQYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDKN 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  ++ P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV + GA I+ 
Sbjct: 292 LQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGAKISA 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E     + F  
Sbjct: 352 ATLNNAEYIKT-----------KDLRINSIVKIKKAGDVIPEVIEAIKDEDFYKLEKFKP 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
             +CP C S + ++ N           C    +CS + L  L+HF SR+A NI  LG + 
Sbjct: 401 ALYCPNCHSLLEKNENE------VDQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDRS 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+  F  +     I+  +DI+ L+  +     +I  I  FG  S  NL DSIN  +N SL
Sbjct: 454 LEILFNLKI----IQNISDIYKLEEYK----DQILAIDNFGLKSYLNLIDSINMSKNNSL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRH+G++ A+ LA+ Y +  N            +  +  LI++  +G+ +A 
Sbjct: 506 EKVLFGLGIRHIGSKTAKILARKYQNIDNLM----------SASYDELIQINSIGESLAL 555

Query: 611 AIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I+++++   N+  ++      ++ +    + N  S I NK  V TGTL +  R + +  
Sbjct: 556 SIIDWFKIEDNLKLIDELKSFNINFNYLGAKINSDSIIANKSFVITGTLTRP-REEFKTL 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +      V   +S++TD ++ G+N GSKLEKA++LGVKI++E+QF  LL+   
Sbjct: 615 IENNAGKVIGSISKQTDYLLAGNNVGSKLEKAKKLGVKIIDEQQFFDLLKSEK 667


>gi|158319601|ref|YP_001512108.1| NAD-dependent DNA ligase LigA [Alkaliphilus oremlandii OhILAs]
 gi|190359226|sp|A8MLJ8|DNLJ_ALKOO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158139800|gb|ABW18112.1| DNA ligase, NAD-dependent [Alkaliphilus oremlandii OhILAs]
          Length = 661

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/708 (29%), Positives = 356/708 (50%), Gaps = 59/708 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L  L   ++ +   YY   +P++ D EYD L      +         +   + P  ++
Sbjct: 5   ERLRQLVDILNEYSYQYYVLDEPVVSDKEYDQLYDELVLLEKE----LNTVLEDSPTIRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++  +     H  P  SL+K    E+L  +  R+ R  +      I + +E K DG  
Sbjct: 61  GGDVLKNFKAHNHLAPLWSLDKCKTPEELISWDLRVRRLLEGSGV-PIEYVMEYKFDGLT 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y  G+ V AA RG+G +GE +   ++ I TIP  L++     IEV+GE  +  +  
Sbjct: 120 LNLTYNNGQLVQAATRGNGTTGEGILEQVKTIKTIP--LTIPHKGRIEVQGEGLMGLSVL 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
            A N   +     P  NPRNAA+G LR L+P     R L+ F + +G    I      E+
Sbjct: 178 AAYNKTALE----PLKNPRNAAAGALRNLDPKVTAKRKLSAFCYNVGFYEGIDFNTHMEI 233

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  ++   FPV+N  ++ +T H ++     +     +L +  DGLV KV+    ++ LG 
Sbjct: 234 LAFLKANKFPVSNYTKKFHTIHQVIEEIETIGEQVKSLDFLTDGLVIKVNHMEARRLLGY 293

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRW ++ KF  ++ +T L D+  Q+GRTG LTP A LEP++IGG  ++ ATL+N +
Sbjct: 294 TQKFPRWAMAFKFEAEEMTTELKDVIWQVGRTGKLTPAAVLEPIDIGGVTVSRATLNNWE 353

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            + +++G RV ++R+ +VIP+++  I  E    A     P  CP C
Sbjct: 354 DIQR-----------KKVKIGCRVWIRRSNDVIPEIMGSI-EETLEGAMDIEKPQHCPAC 401

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S VV        +  A   C   L+C  Q + R+ H+ SRDA +I G  ++  +  F+ 
Sbjct: 402 HSEVV--------ERGAHIFCPNSLSCKPQLVSRIVHYASRDAMDIVGFSEKTAEQLFEE 453

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                ++R  AD++ ++            +  FGD    NL ++I   +N  L+ F+++L
Sbjct: 454 ----LNLRDLADLYEIKYEDLI------KLPRFGDKKARNLLEAIENSKNCKLDSFVYAL 503

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG + A  LAK+Y S+Q          A    ++  LI +P VGDI+AQ+I++F++
Sbjct: 504 GIPNVGRKTATDLAKHYKSFQ----------AIQEAEFQELITLPDVGDIVAQSIIDFFE 553

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           +     +V  L+ E    + +  +   +    K +V TGTL+K  R + +E + +LGA V
Sbjct: 554 DEEIKKSVNRLINEGIRPLFKEVEQQENIFLGKTVVVTGTLEKYGRKEIKELLEKLGAKV 613

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL---GVK----IMNEEQFLFLL 718
           +  +S+ TD ++ G+  GSKLEKA ++   GV+    I++E +F  +L
Sbjct: 614 TGSVSKNTDFLLAGEAAGSKLEKAMEIIASGVETSLRIISEAEFEAML 661


>gi|269959115|ref|YP_003328904.1| NAD-dependent DNA ligase [Anaplasma centrale str. Israel]
 gi|269848946|gb|ACZ49590.1| NAD-dependent DNA ligase [Anaplasma centrale str. Israel]
          Length = 673

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/710 (36%), Positives = 403/710 (56%), Gaps = 44/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQAR+ L+ L  ++ +HD  Y+    P + D +YD L +    +   FPD+ + +D   
Sbjct: 2   LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDD--- 58

Query: 74  PLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             + +G  +++    KV H  P LSLE  + ++D+ KFITR+ RF + + D+ +  + E 
Sbjct: 59  YADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG   +  Y  GK    A RG+GH GED++     +  +P  L  + PE++EVRGE+Y
Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQL-DSAPEVLEVRGEIY 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +   DF  L       G   +ANPRNAA+G +R+LN   +  R L++  +    ++    
Sbjct: 178 MHHEDFEKL------RGSCNFANPRNAAAGSIRQLNQKIVEERNLSYVAYSAVNST---F 228

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E+L+++   GF  N  V   +     V++YN + + RS L YDIDG+VYKV+  + 
Sbjct: 229 ATQQEILKQLDEWGFHTNKQVLFTDKIEEAVAFYNSVYTTRSALGYDIDGVVYKVNSINF 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK LG   +SPRW I+HKF   +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A
Sbjct: 289 QKLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN + I+            +D+R+GD V+VKRAGEVIP+VVD+    R    Q F FP
Sbjct: 349 SLHNLNEIER-----------KDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C S++ R+          A RC   L+C AQ LER+KHFVSRD  NI GLG +Q+
Sbjct: 398 SHCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQI 451

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +FF         I   ADIF+L+ +        E+  G+G+ SV NL  +I     + L 
Sbjct: 452 EFFSNH----GLINGIADIFSLEEKLHGINLGTEH--GWGEKSVANLIAAIRNSATVRLS 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FIF+LGIR +G   A+ +A++Y SY+N+ Q +  +      +    +++  +G+    +
Sbjct: 506 NFIFALGIRFIGVGAAKLVAEHYRSYKNWHQAMLALT-----ETHDTVQIRGLGEKSISS 560

Query: 612 IVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +  F+    N+  +E+L  +++        +  SS I  K +VFTGTL+ + R +A+   
Sbjct: 561 LKAFFSVQGNLEVLESLSAKLNILDEASPAQRGSSAISGKTVVFTGTLESMSRTEAKLQA 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             LGA V+  +S  T +++ G NPGSK EKA  L V++++E+ ++ +++ 
Sbjct: 621 ESLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVED 670


>gi|307720805|ref|YP_003891945.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294]
 gi|306978898|gb|ADN08933.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294]
          Length = 650

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/704 (31%), Positives = 369/704 (52%), Gaps = 58/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E     ++++     YY    PI+ D  YD L +  +    A P+       N P  +
Sbjct: 3   KQEYKQAVEKLNLWAYHYYVLDDPIMTDEVYDKLYKEVEQYEEAHPEDILK---NSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  ++    K  H     SLE I++ + L+K++ ++YR      D+ + F  EPK DG 
Sbjct: 60  VGDVVSEGFAKEPHLSRMWSLEDIFDADGLKKWLEKVYRL-----DSHVTFYCEPKYDGA 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G+      RGDG  GE ++  ++ I T+P  LS+   E+IE+RGEV I K++
Sbjct: 115 SLNLVYENGELQKGITRGDGTVGERITQNVKTIHTVP--LSIEHKELIEIRGEVVIFKDE 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E +  G  P+ANPRNAA+G LR+L+P+    R L F  +G+G  + +  K   +
Sbjct: 173 FDKINKERLKKGEPPFANPRNAAAGSLRQLDPSITAARNLVFLPYGVG-VNTLPHKLLND 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +  +  LGF           +  I + Y  MK  R +    +DG+V KV+E + Q  +G
Sbjct: 232 KMSYIYELGFRKPPLRAITKGYDEIEAIYERMKEERESYSMMLDGMVVKVNEIAAQIDMG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + PRW +++KF   +  TRL +I +Q+GRTG++TPVA +EP  I GA++  ATLHN 
Sbjct: 292 YTVKVPRWAVAYKFPAVEKITRLKNIILQVGRTGVVTPVAVVEPTEIEGAVVERATLHNF 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ +           DIR+GD+V++ R+G+VIPK+V ++  ER         P+ CP+
Sbjct: 352 DEIERM-----------DIRIGDQVIILRSGDVIPKIVKVLTQERDGSEVKIERPTHCPV 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++++            +C   L C A+ +  + +F S+   NI+GLG + ++  F 
Sbjct: 401 CGSELLQEE--------VLIKCQN-LKCEARVVNSIIYFASKQCLNIDGLGNKIVEQLFN 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +R   D+F+L +       K+  + GF +    NL  SI   +   L RFI +
Sbjct: 452 ----AGLVRSVLDLFSLTQ------EKLLELEGFKEKKAQNLLRSIENAKGCELWRFINA 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   ++ +A+ +             + + + +   L+ +  +GD +A++ +EF 
Sbjct: 502 LGIEHIGEVASKRIAEAFG------------LEYIHQNKEQLLTIEGIGDEMAESYLEFM 549

Query: 617 Q-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + N   +  ++ +L+ V P   + E+   +  + K++V TGT+ +  R   +E +  LGA
Sbjct: 550 RVNEETVVKLQEILRPVEP--KKREEAQDNPFKGKRIVLTGTMSEP-RPVIKEKLEDLGA 606

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            VS  +S+KTD +I G++ GSK +KA  LGVK + E++   LLQ
Sbjct: 607 KVSGSVSKKTDYVIYGEDAGSKYDKAISLGVKTLTEDELKELLQ 650


>gi|312962450|ref|ZP_07776941.1| DNA ligase [Pseudomonas fluorescens WH6]
 gi|311283377|gb|EFQ61967.1| DNA ligase [Pseudomonas fluorescens WH6]
          Length = 789

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/628 (32%), Positives = 331/628 (52%), Gaps = 48/628 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P+L      + 
Sbjct: 1   MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELVTR---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H IP LSL   ++   + +F  R+                ++ 
Sbjct: 58  PTQRVGSAALSAFTQVRHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y+ G+ V  A RGDG +GED+S  +R +  IP  L     P  +E
Sbjct: 118 YSCEPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+     +R L F  +G+G+
Sbjct: 178 VRGEVFMSKAGFERLNASQLDVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +   +      L++++  G P+++ ++ A      + YY ++ + R++LPY+IDG+V+K
Sbjct: 238 VTADISDTHIGNLKQLQQWGMPISHELKLAKGIQECLDYYRDIGARRNSLPYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNSIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R   A
Sbjct: 358 VTVSNATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVSVVTERRPEHA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + HFVSR 
Sbjct: 407 RAVQIPESCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I+GLG + ++     +     I  PAD++ L+  Q           GF D+S   L 
Sbjct: 467 AMDIDGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIIDLE------GFADISSKKLI 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  +L RFI++LGI  VG E A+ LA+   S +   + +  ++ +         
Sbjct: 517 TAIEHSKAPTLARFIYALGIPDVGEETAKVLARSLASLERVRKALPEVLTY--------- 567

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +P VG  +A  I  F+++  N   + A
Sbjct: 568 -LPDVGLEVAHEIHSFFEDSHNQQVIGA 594



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 16/187 (8%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
               + +L   +  L +  VG   A+ LA  + S +   +           DWL + +  
Sbjct: 614 EFAASTTLGGLLDKLHVPSVGPGAAQKLADKFTSLEGVIKA----------DWLDMRQA- 662

Query: 603 LVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL 658
            + +  A+A+ +F+ N  N     A+E  LK+        +K V          V TG+L
Sbjct: 663 -LPEKQAKAVRDFFDNADNANRALAIEQQLKDFGMHWQSEKKVVEGLPEAGHTWVLTGSL 721

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + R  A+E +  LGA V+  +S KT  ++ G   GSKL KA +LG+K+++EE F+  L
Sbjct: 722 ELMSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFL 781

Query: 719 QQYNTTL 725
            ++N  +
Sbjct: 782 AKHNIPI 788


>gi|222481049|ref|YP_002567286.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
 gi|254781342|sp|B9LU22|DNLJ_HALLT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222453951|gb|ACM58216.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
          Length = 710

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/730 (30%), Positives = 360/730 (49%), Gaps = 59/730 (8%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+ ALS ++A ++ S L   I  HD  YY  + P+I D  YD L  R   + + F   
Sbjct: 24  FEPVGALSEDEATEQASLLRAAIREHDHRYYLEADPLIPDETYDRLFTRLQELENEFD-- 81

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW--QKKDD 123
                 N P  ++GGE    L  V H  P  S++     + +R+F  R+ +    +  D 
Sbjct: 82  --LPTQNSPTRRVGGEPLDELATVEHVAPMRSIDNATEADAVREFDGRVRKGLDAEGFDS 139

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
           +++ +  EPK DG  + + YE G++V AA RGDG +G+DV+  +R I ++P  L  + P 
Sbjct: 140 DAVEYVCEPKFDGLSVEVIYEDGEYVRAATRGDGTAGDDVTEQVRTIRSVPGKLRGDPPS 199

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
            + VRGE Y+ ++ F A N+ ++  G +P+ANPRNAA+G LR+L+P+ +  R L+ F   
Sbjct: 200 RLAVRGEAYMPRDAFKAYNEALMERGEEPFANPRNAAAGTLRQLDPSVVAERPLDIFFFD 259

Query: 243 LGKTSEIF-------AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           +                  +E        G    N V + +   G + Y + + + R  L
Sbjct: 260 VLGWENDAEGDSPNRPATHWEEFDTFDAFGLRRANRVERVDDIEGALDYRDRLMADREDL 319

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            + IDG+V  VD+ + ++ LG  AR+PRW  ++KF  + A+T +  I +Q+GRTG LTPV
Sbjct: 320 NFAIDGVVIAVDDRANREALGATARAPRWAFAYKFPPRTATTIVEGITVQVGRTGRLTPV 379

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A L+P+++GG  ++ ATLHN   I+ L            + VGD V + RAG+VIP V +
Sbjct: 380 AELDPIDVGGVTVSRATLHNPAEIEAL-----------GVNVGDCVRIYRAGDVIPYVPE 428

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           ++  +R      + FP  CPIC + V RD             CTGGL C AQ    ++H+
Sbjct: 429 VV-EKRS--EGTYVFPETCPICDAPVERD--------GPLAFCTGGLVCPAQLERAVEHW 477

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
             RDA +IEGLG +++    +    A  +    D++ L      +        G+G+ S 
Sbjct: 478 ARRDALDIEGLGPERVQQLRE----AGLVESLPDLYDLAVDDLAALE------GWGETSA 527

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL   +   R+  L+ F+  LGI  VGA  AR+LA ++           + +       
Sbjct: 528 ENLIAELAATRDPPLDDFLAGLGIPDVGATTARALAAHFGDLDAILDADEDALRA----- 582

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
                V  VG  +A++I  F  N  N  A++ L +         +      ++    VFT
Sbjct: 583 -----VDDVGPEVAESIRTFLDNAENRVAIDGLRER-GVDPESVDVETGDALDGLTFVFT 636

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
           G+L    R +AQ +V   GA  ++ +S  TD ++ G++PG SK + A   GV +++EE+F
Sbjct: 637 GSLST-TRGEAQAHVEAHGADATSSVSGNTDYLVAGESPGRSKRDDADAEGVPVVDEEEF 695

Query: 715 LFLLQQYNTT 724
             LL +    
Sbjct: 696 AGLLAERGVA 705


>gi|229819870|ref|YP_002881396.1| DNA ligase, NAD-dependent [Beutenbergia cavernae DSM 12333]
 gi|229565783|gb|ACQ79634.1| DNA ligase, NAD-dependent [Beutenbergia cavernae DSM 12333]
          Length = 782

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/783 (28%), Positives = 351/783 (44%), Gaps = 98/783 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A    + L Q+++     YY    P + D+ +DAL    +A+  + P+L     P+ P 
Sbjct: 23  EAAHRWAELAQQVNDARFAYYVKDAPTLSDAAFDALLHELEALEESHPEL---RVPDSPT 79

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG  +     V H    LSL+  ++ E +  +  R+ R         + +  E KID
Sbjct: 80  QQVGGTFSTEFTAVEHVERMLSLDNAFSAEGVESWAQRVERDLDAAAAG-LHYLCELKID 138

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVY 192
           G  I + YE G+ V AA RGDG +GEDV+  +R I +IP VL  +    P  IE+RGEV+
Sbjct: 139 GLAIALLYEGGRLVRAATRGDGRTGEDVTLNVRTIASIPHVLGGDAASHPARIEIRGEVF 198

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251
           +    F ALN   +  G+ P+ANPRNAA+G LR+ +P    R  L  + HG+G      A
Sbjct: 199 LPVEAFEALNSSQVEAGKSPFANPRNAAAGSLRQKDPRVTARRALGMYAHGIGALDWGDA 258

Query: 252 ------KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q ++ + +   G P +   R  +   G+          R  + ++IDG+V K
Sbjct: 259 PEASSITRQSQVYELLSSWGVPTSPHTRVVDDLAGVQEMIAYYGEHRHDVEHEIDGVVVK 318

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VDE +LQ++LG  +R+PRW I++K+  ++ +TRLLDI + +GRTG +TP   +EPV + G
Sbjct: 319 VDEVALQRRLGATSRAPRWAIAYKYPPEEVNTRLLDIRVSVGRTGRVTPYGVMEPVVVAG 378

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN   +K            + + +GD V++++AG+VIP++V  +V  R    
Sbjct: 379 STVEAATLHNASEVKR-----------KGVLIGDTVVLRKAGDVIPEIVGPVVALREGRE 427

Query: 426 ---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + F  P  CP C + +         +     RC    +C AQ  ER+     R  F+
Sbjct: 428 SELREFVMPDVCPSCGTPL-----APAKEGDVDIRCPNARSCPAQLSERVSALGGRGGFD 482

Query: 483 IEGLGKQQLDFFFKSE--------------------------DPAFSIRIPADIFTLQ-- 514
           IE LG +        E                            A  +   A +F L   
Sbjct: 483 IEALGWEAATALTDPERGRPVDASVYRPGADLTAEAPAALPDRQAPVLATEAGLFELTPD 542

Query: 515 -----------RRQQTSTTKIENILGFGDV-----------SVTNLYDSINKRRNISLER 552
                      +R+  +T   E+   F              +   L+D +   +   L R
Sbjct: 543 DVANVRVWREIKRKGEATGFWEDRPFFFTKGTAKVPPKPTQTTQVLFDQLELAKTRPLWR 602

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +L IRHVG   AR+LA+ + S            A +      L     VG  IA A+
Sbjct: 603 VLVALSIRHVGPTAARALAQRFGSID----------AIDAASEEELAAADGVGPTIAAAV 652

Query: 613 VEFYQNP-----RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            E+  +P          V              +++V   +E   +V TG+L++  R  A+
Sbjct: 653 KEWLGDPEAPDNWRREIVRRWAAAGVRMADERDESVPRTLEGLTVVVTGSLERFTRDGAK 712

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
           E V   G   +  +S+ TD ++VG+N GSK  KA++LG  I++E  F  LL +    +  
Sbjct: 713 EAVLARGGKAAGSVSKSTDFVVVGENAGSKETKARELGRPILDEAGFERLLAEGPDAVAE 772

Query: 728 HDD 730
             D
Sbjct: 773 SAD 775


>gi|163854038|ref|YP_001642081.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1]
 gi|254781364|sp|A9VWA4|DNLJ_METEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163665643|gb|ABY33010.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1]
          Length = 814

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/622 (41%), Positives = 376/622 (60%), Gaps = 31/622 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +EALS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   FP L  +
Sbjct: 10  VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            + +     +G + +    KV H++P LSL   +  ED+ +F+ R+ RF     + S+ F
Sbjct: 70  TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEESVAF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
           T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  L   NIPE++EV
Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGENIPEVLEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  G+ 
Sbjct: 187 RGEVYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDIDG+VYKV
Sbjct: 247 SEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRTIEAERAGLGYDIDGVVYKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG 
Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++ +R  DA 
Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIEKRPADAV 426

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+ F++EG 
Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 486

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTKIEN---------- 526
           G+  ++  F+    A  ++ PAD+F L+          RR+  S  +             
Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARRETLSAQRRSEGEPAPKKPTK 542

Query: 527 -ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                 D ++ NL  S++ RR I L RF+F+LGI  +G   A++LAK +    +    + 
Sbjct: 543 KKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMPSLMAALE 602

Query: 586 NI-IAHNNDDWLSLIRVPLVGD 606
                    DWL L  +P +G 
Sbjct: 603 AATREQAGRDWLELSALPRIGP 624



 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 112/248 (45%), Gaps = 14/248 (5%)

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A  I  +G+       K      S+    +  T ++  +     +  +   G  +   L+
Sbjct: 573 ALGIPQIGESTAKALAKRFPDMPSLMAALEAATREQAGRDWLE-LSALPRIGPGTRDRLF 631

Query: 540 DSINKRRNISLERFIF---SLGIRHVGAEIA---RSLAKYYLSYQNFAQEINNIIAHNND 593
           ++++      L        SLG R  G        ++  +Y S +     +    +    
Sbjct: 632 ETLD-----PLPGEAMQDLSLGARLRGRLTPSQREAVLAHYGSEEKVDAALERAASQRPG 686

Query: 594 DWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           D   L      +G +   ++++F+  P N  AV ALL+EV  +        ++    K +
Sbjct: 687 DAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVRALLEEVG-TEPLATTTSAAAFAGKTV 745

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTG+L+K+ R +A+    +LGA VS  +S KTD+++ G   GSKL+ A++ GVK+++E+
Sbjct: 746 VFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVKVVSED 805

Query: 713 QFLFLLQQ 720
            +L +L +
Sbjct: 806 DWLAMLAE 813


>gi|212550985|ref|YP_002309302.1| NAD-dependent DNA ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|254781545|sp|B6YRR9|DNLJ_AZOPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212549223|dbj|BAG83891.1| NAD-dependent DNA ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 663

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/708 (30%), Positives = 358/708 (50%), Gaps = 50/708 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++ +L QEI   +  YY   +PI+ D E+D   +  + +   +P+     D   P 
Sbjct: 2   NIKQKIDNLRQEIDNWNYRYYVIYQPIVSDFEFDKKLKELEKLEAQYPEY---YDYYSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            +IG ++N +  ++ H  P LSL   ++ E +  F  RI +        +     E K D
Sbjct: 59  QRIGNDINNNFAQINHIYPMLSLSNTYSWEGINDFYNRIKKILN----ENFVIACELKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  I++ YE G  + A  RGDG +G+DV+  IR + +IP  L   N P   E+RGE+   
Sbjct: 115 GVSISLIYESGLLLRAVTRGDGTTGDDVTTNIRTVKSIPLKLYGNNYPRFFEIRGEIVFP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
              F  +N E I     P+ANPRNAA+G L+ LNP  ++ R L+ +++ L     + +  
Sbjct: 175 WAAFNKINKERIENSEPPFANPRNAAAGTLKTLNPQVVSQRNLDAYLYQL-LGDNLSSDS 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            YE LQ  +  GF V+N ++   T   I ++ N     + +LP+ +DG+V KVD    Q 
Sbjct: 234 HYENLQLAQGWGFKVSNIIKCCKTIDEIENFINYWGKWKKSLPFAVDGVVLKVDSIRQQS 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  +   T L  +D Q+GRTGI+TP+A LEPV + G ++  A+L
Sbjct: 294 LLGRIAKSPRWAIAYKFQSETVKTTLHSVDFQVGRTGIITPIANLEPVLLSGTIVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPS 432
           HNED I  L           D+ +GD+  V++ GE+IPK+  I    R     +  +FP 
Sbjct: 354 HNEDIINAL-----------DLHIGDQCYVEKGGEIIPKITGINKEARLTFGNKAVNFPK 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + ++R  N        A+ C     C  Q    + HF SR A NI  +G++ ++
Sbjct: 403 NCPACNTPLIRFQNET------AYYCPNYTQCKPQIKGMITHFASRKAMNI-NVGEETIE 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F++    A  +R  AD++ ++         I  +  + + S  N  +S+ + + +  ER
Sbjct: 456 TFYR----AGLVRDIADLYEIK------IDDILQLKRWAEKSAINFVESVQQSKQVPYER 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            ++ LGI  VG  +A+ LAK + + +  +   N            L  +  +G+ IAQ++
Sbjct: 506 VLYGLGIHFVGEVVAKRLAKAFPTIEQLSIANNE----------QLTTIDGIGNQIAQSV 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++++ N  N+  +  L           +  + +++  K  + +G  +K  R K +E +  
Sbjct: 556 IQYFSNENNLQLIRRLKLYGLQLFTIQKIFIDNKLAGKTFIISGIFRKYSRDKYKELIEN 615

Query: 673 LGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQ 719
            G    + LS KTD I+ G N G  KL KAQ+ G+KI++E++FL +++
Sbjct: 616 NGGKNVSSLSAKTDFILSGVNMGPVKLIKAQRFGIKIISEDEFLKMIE 663


>gi|254564006|ref|YP_003071101.1| DNA ligase [Methylobacterium extorquens DM4]
 gi|254271284|emb|CAX27296.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens DM4]
          Length = 814

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/622 (41%), Positives = 376/622 (60%), Gaps = 31/622 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +EALS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   FP L  +
Sbjct: 10  VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            + +     +G + +    KV H++P LSL   +  ED+ +F+ R+ RF     + ++ F
Sbjct: 70  TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEEAVAF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
           T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  L    IPE++EV
Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGEGIPEVLEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE+Y+S +DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  G+ 
Sbjct: 187 RGEIYLSHDDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDIDG+VYKV
Sbjct: 247 SEPFNDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDIDGVVYKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG 
Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++++R  DA 
Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVLDKRPADAV 426

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+ F++EG 
Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 486

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTKIEN---------- 526
           G+  ++  F+    A  ++ PAD+F L+          RR+  S  +             
Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRTEGEPAPKKPTK 542

Query: 527 -ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                 D ++ NL  S+  RR I L RF+F+LGI  +G   A++LAK +         ++
Sbjct: 543 KKGEEEDKAIKNLLASLEARRKIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAALS 602

Query: 586 NIIAH-NNDDWLSLIRVPLVGD 606
                    DWL L  +P +G 
Sbjct: 603 AATQEQAGQDWLELSALPRIGP 624



 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 115/262 (43%), Gaps = 16/262 (6%)

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525
           A++   L  F+   A  I  +G+       K      ++       T ++  Q     + 
Sbjct: 561 ARRKIPLNRFL--FALGIPQIGESTAKALAKRFPDMPALMAALSAATQEQAGQDWLE-LS 617

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIF---SLGIRHVGAEIA---RSLAKYYLSYQN 579
            +   G  +   L+++++      L        SLG R  G        ++  +Y S   
Sbjct: 618 ALPRIGPGTRDRLFETLD-----PLPGEAMQDLSLGARLRGRLTPSQREAVLAHYGSEAE 672

Query: 580 FAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
               +    +    D   L      +G +   ++++F+  P N  AV ALL+EV  +   
Sbjct: 673 ADAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVRALLEEVG-TEPL 731

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                ++    K +VFTG+L+K+ R +A+    +LGA VS  +S KTD+++ G   GSKL
Sbjct: 732 VATTSAAAFAGKTVVFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKL 791

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
           + A++ GVK+++E+ +L +L  
Sbjct: 792 KDAEKHGVKVVSEDDWLAMLAD 813


>gi|295688860|ref|YP_003592553.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756]
 gi|295430763|gb|ADG09935.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756]
          Length = 783

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/797 (33%), Positives = 403/797 (50%), Gaps = 98/797 (12%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
             LIP+  L+  QA +EL  L  E++ HD  Y+Q   P I D++YDALKRR   I   FP
Sbjct: 1   MSLIPVADLTEAQAVEELERLADELTRHDLAYHQQDNPTISDADYDALKRRNLDIETRFP 60

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
            L R    N P  ++G         V H +P LSL+  ++ ++  +F  R+ RF +    
Sbjct: 61  HLVRD---NSPSMRVGAARAEQFSPVRHGVPMLSLDNAFSNDEAEEFDARVRRFLRLSPS 117

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIP 182
            ++ +T EPKIDG   ++RYEKG  V  A RGDG +GEDV+A +R I  IP  L     P
Sbjct: 118 ETLAYTAEPKIDGLSASLRYEKGVLVQGATRGDGQTGEDVTANLRTIADIPHRLKGSGWP 177

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           ++IEVRGEVY+    F A N      G++ YANPRN A+G LR+++ T    R L FF +
Sbjct: 178 DVIEVRGEVYVELEAFAAFNKAAEDAGQRTYANPRNFAAGSLRQIDSTISAQRPLRFFGY 237

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
             G  SE FA GQ+E L+K+R  GF       R+     G++  Y E +++R TL +DID
Sbjct: 238 AWGLVSEPFAGGQWEALEKLRSWGFVTTAPPARRVENAQGLLDVYAEFEALRPTLNFDID 297

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKVD+  LQ++LG  +RSPRW I+ KF  ++A T L  ID+Q+GRTG +TPVARL+P
Sbjct: 298 GVVYKVDDLELQRRLGFVSRSPRWAIARKFPAQKARTLLEAIDLQVGRTGAITPVARLKP 357

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG ++TNATLHN D I+ L           D R+GD V+V+RAG+VIP++V++ ++ 
Sbjct: 358 VTVGGVVVTNATLHNGDEIERL-----------DARIGDTVVVQRAGDVIPQIVEVALDA 406

Query: 421 RHPDA-QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           R   A +P+ FP  CP      +      +G+     RCTG  AC  Q++E L+HFVSR 
Sbjct: 407 RPDPAPEPYVFPHECPCPLKTPLAREVNASGQESVVRRCTGEFACPFQRVEHLRHFVSRR 466

Query: 480 AFNIE---------------------------------------GLGKQQLDFFFKSEDP 500
           AF+IE                                       G G+  +    +  + 
Sbjct: 467 AFDIEGLGEKQLQAFFDEGWITEPADIFKLARDEEKLAALREREGYGETSVANLARGIEA 526

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
             +I +   I+ L  R     T    +    D        +    R +  E ++      
Sbjct: 527 RRTITMDRMIYGLGAR-DIGETTSTVLARNFDRFEDLQEAAEKAARALPGETYLELSTAP 585

Query: 561 HVGAEI-------------------------------------ARS-LAKYYLSYQNFAQ 582
            VG +                                      AR+ LA+ Y ++  FA+
Sbjct: 586 GVGPKALDSLVEAGRGGLKADPWPQTDDLEIKIGHAVPKLTKPARAALAQRYGTWDAFAE 645

Query: 583 EINNIIA-HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
            +    +    DD+L L  +  VG + AQ++  F+    N   V  L+ E+        K
Sbjct: 646 GLAAAASGAPGDDYLHLAAIDGVGPVAAQSLARFFAEDHNRQKVANLVAELDIQPVEKPK 705

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
              + +  K +VFTG L+K+ R +A+     LGA V++ +S+KTD+++ G   GSKL+ A
Sbjct: 706 -TDTAVAGKTIVFTGALEKMTRDEAKAQAEGLGAKVASSVSKKTDLVVAGPGAGSKLKTA 764

Query: 702 QQLGVKIMNEEQFLFLL 718
            +LG+++M E+++L L+
Sbjct: 765 TELGIQVMTEDEWLALV 781


>gi|186701986|ref|ZP_02554435.2| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|186700761|gb|EDU19043.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 673

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/712 (30%), Positives = 369/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + ++  L+Q++   +  YY    P + D  YD   R    + + +P    +   N 
Sbjct: 1   MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GG ++    KV H  P LSL   +N +DL+KF        Q    +   + +EPK
Sbjct: 58  PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFDQ----DNQNASVDLKGYVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q +R   F V++ + + +T + +++  +    +R  L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYEPI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 INCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+ +      I+  AD++ LQ+ ++   T    I    + S +NL +SIN  +  SLE
Sbjct: 456 NKFYDAN----LIKNIADLYYLQKHKEFILTSDFKI---KEKSFSNLINSINNSKKCSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ +AK + +     +           ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKIAKQFKTMTALMRA----------NFDELTNVDACGEKAASS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI------ENKKLVFTGTLQKIQRHK 665
           ++ ++ +  N+  V  L +         +      I      +NK  V TG+   I R +
Sbjct: 559 LINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLAGTEAGTKLEKAKLLGVKII-ENEFWK 668


>gi|313673736|ref|YP_004051847.1| DNA ligase, nad-dependent [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940492|gb|ADR19684.1| DNA ligase, NAD-dependent [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 655

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/694 (31%), Positives = 379/694 (54%), Gaps = 57/694 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +   L +E+++H   YY  + P I D++YD L ++   I    P+      P+ P  +
Sbjct: 5   KTDYDRLVKELNHHCIRYYLLNDPAISDAKYDNLYKQLRKIEEEHPEWI---SPDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++      + H     SL+ I++  +L  F +++Y+       + I + +EPKIDG 
Sbjct: 62  VGFKVTSG-KTIKHLYKMFSLDNIYSEGELNDFFSKVYKVVG----SDIDYVVEPKIDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++I YE G   YAA RGDG  GED++  I+ I  +P  +S      I +RGEVY+SK  
Sbjct: 117 AVSIVYEDGVLSYAASRGDGVEGEDITHNIKTIRELPVSISEK--NRIVLRGEVYLSKEQ 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256
           F  +N E    G   +ANPRNAA+G L+ L+P    R  L+ F++ +           ++
Sbjct: 175 FNKINRERKNAGESLFANPRNAAAGTLKILDPAITARRGLSIFIYSI--EEGRRYDNHFD 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ +GFP+N  +     +  I  Y ++++S+R  LPYDIDG V KV+++ ++  LG
Sbjct: 233 DLKWLKSIGFPINEHIFV-GKYKDIKGYIDKIESLRKNLPYDIDGAVVKVNKYEVRSILG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E  + P+W I++K+  +Q +T L D+  Q+GRTGI+TPVA L+ VNI G+ ++ A+LHNE
Sbjct: 292 ETIKYPKWAIAYKYEAEQVTTILKDVIFQVGRTGIVTPVAVLDTVNISGSNVSRASLHNE 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK L            +++GD V V+++GE+IPKV+ ++   R    +   FPS CP 
Sbjct: 352 DEIKRL-----------GVKIGDTVFVEKSGEIIPKVIKVVPEFRTGGEKEIIFPSNCPS 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++         K+ A  +C   L C  +    + H+ SRDA +I GLG++ ++ F+ 
Sbjct: 401 CGDKLF--------KIDAYWKCLN-LDCPDRVKGSITHYASRDAMDIRGLGEKNVERFYD 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +R   DI+ L+           N+ GFG++S  NL  SI + +     R I++
Sbjct: 452 ----LGLLRSIPDIYRLEYDDLV------NLEGFGELSADNLLKSIEESKRREFYRLIYA 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  VG ++A++LA ++ S       I++I+A + DD    + +  +GD + ++I EF+
Sbjct: 502 LGIDGVGIKMAQTLALHFKS-------IDSIMAASIDDL---MDIYGIGDEVGRSIFEFF 551

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  RNI  ++ L +     +   ++ +  ++     + TGTL K  R   ++ + + G  
Sbjct: 552 RERRNIEMLQFLRRVGVNMV--QKEVMGDKLSGVTFLITGTLSKP-RKFYEDIIIKNGGK 608

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           + + +S+  + +IVG+NPGSKLEKA+ LGV+++ 
Sbjct: 609 ILSGVSKNLNFLIVGENPGSKLEKAKSLGVEVIT 642


>gi|187776813|ref|ZP_02993286.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC
           15579]
 gi|187775472|gb|EDU39274.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC
           15579]
          Length = 664

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/714 (28%), Positives = 355/714 (49%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ H   YY      I D EYD        +        +   P  
Sbjct: 1   MDNKLEKMKELVEELNQHAYEYYVLDNSSISDKEYDLKYDELVVLEKE----TKVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G  +     K TH     SL+K  N+  L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDNILGEFGKYTHKGRLWSLDKAQNMSQLTEWHNRNLKTVEQYNSINEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  V  A RG G  GED++A I+ I T+P  +  N   +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILVKGASRGTGIIGEDITAQIKTIKTVPLKIKNN--HVIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  + + R L+ F + +G 
Sbjct: 175 VHGEAILTKTAFEEYN----KTAQVPLKNLRNGAAGALRNLDIKETSKRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM++ ++ +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYTEMMKFIKNMGLPQDKYIKECTNMEEVEKEIQYIESIREELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   +K LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTRKVLGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D I+            +++++G +VLV+R+ +VIP+++ ++  E   ++
Sbjct: 351 VTVKRATLNNMDDIQR-----------KNVKLGAKVLVRRSNDVIPEIMGVV-EESLEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KEIEAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+       I+  AD++ +++ +  +  K      FGD    NL D+I   
Sbjct: 451 FSEKTAEQLFEK----LDIKSIADLYKIKKEELLTLDK------FGDKKSQNLIDAIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + +N                  L+ VP VG
Sbjct: 501 KNCDLPSFIYALGIPNVGKKTANDLVMKFKTLENIESAT----------IEELVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A+++ +F+++ + I  +E LL          E    +    K +V TG+L    R +
Sbjct: 551 EIVAKSVYDFFKDEKIINNIEELLNLGVKPYYEEEIIDENPFMGKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAVELGVKVINEEEFSNKIK 664


>gi|288958932|ref|YP_003449273.1| DNA ligase (NAD+) [Azospirillum sp. B510]
 gi|288911240|dbj|BAI72729.1| DNA ligase (NAD+) [Azospirillum sp. B510]
          Length = 788

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/625 (41%), Positives = 386/625 (61%), Gaps = 32/625 (5%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           + I ++AL+ EQA  +L++L  EI++HD  Y+Q  +P I D++YDAL RR  AI   FP+
Sbjct: 12  RSIAVDALTPEQAAADLAALAAEIAHHDRLYHQQDQPEITDADYDALVRRNLAIEARFPE 71

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R+   + P  ++G        KV H+IP LSL   +  ED+ +F  R+ RF    DD 
Sbjct: 72  LRRA---DSPSLRVGAAPAAGFGKVRHAIPMLSLGNAFAPEDVAEFDARVRRFLGLADDA 128

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + F  EPKIDG   ++RY+KG+ V AA RGDG  GE+V+A +R I  +P  L    PE+
Sbjct: 129 PLTFVAEPKIDGLSCSLRYQKGELVLAATRGDGAEGENVTANVRTIRDVPHRLPAPFPEV 188

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGEVY+S++DFLA+N      G + +ANPRNAA+G LR+L+     +R L FF + L
Sbjct: 189 LEVRGEVYMSRDDFLAMNAARAEKGEQLFANPRNAAAGSLRQLDSAITASRPLCFFGYAL 248

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+ SE  A+ Q+ + ++++  GF +N      +    +++YY  +  +R+ LP+DIDG+V
Sbjct: 249 GEASEPIAETQWGIRERLKGWGFQLNRPAELCDGKDKLLAYYEGIGRLRAGLPFDIDGVV 308

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD   LQ++LG  +R+PRW I+HKF  +QA TRL  I IQ+GRTG LTPVA L+ + +
Sbjct: 309 YKVDSLELQQRLGFVSRAPRWAIAHKFPAEQAQTRLKAITIQVGRTGALTPVAELDDITV 368

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++ ATLHNED I             +DIRVGD V+V+RAG+VIP+VV++++++R  
Sbjct: 369 GGVVVSRATLHNEDEIAR-----------KDIRVGDLVVVQRAGDVIPQVVEVVLSQRPA 417

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+ P+     CP+C S  +R+            RCTGGL C+AQ  ERL+HFVSRDAF+I
Sbjct: 418 DSVPYVPVETCPVCGSLAIREAGE------VVRRCTGGLICAAQAKERLRHFVSRDAFDI 471

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++ ++ F+        I+ P DIFTL+ R +          G+ + SV NL+ +IN
Sbjct: 472 EGLGEKIIEEFWDE----GFIKSPVDIFTLEDRVEL-----IGRPGWKEKSVENLFKAIN 522

Query: 544 KRRN-ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI-IAHNNDDWLSLIRV 601
           +RR+ I L R IF+LGIRHVG   A+SLA++Y + + +   +     A    +W  L  +
Sbjct: 523 QRRDGIELHRVIFALGIRHVGEVTAKSLARHYRTMRGWVDGMRAAERAMPGQEWRDLHAL 582

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVE 626
             VG + A  I+ ++ +P +   ++
Sbjct: 583 NGVGPVTADTILAWFADPESAAKLD 607


>gi|254420802|ref|ZP_05034526.1| DNA ligase, NAD-dependent [Brevundimonas sp. BAL3]
 gi|196186979|gb|EDX81955.1| DNA ligase, NAD-dependent [Brevundimonas sp. BAL3]
          Length = 776

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/791 (34%), Positives = 394/791 (49%), Gaps = 99/791 (12%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
              P+E L+ E A +EL+ L  E++ HD  Y   + P I D++YDAL+ R  AI  AFPD
Sbjct: 7   PFPPVEDLTAETAAEELAWLAAEMARHDALY-NEATPEISDADYDALRARNLAIETAFPD 65

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R   P+ P +K+G  ++    +V H +P LSL+  ++  ++R F+ RI RF +   D 
Sbjct: 66  LVR---PDSPSHKVGAAVSSQFAEVRHGVPMLSLDNAFDEGEVRDFVARIARFLKLPSDE 122

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPE 183
            I F  EPKIDG    + Y  G+    A RGDG +GEDV+A +  I  + + L   + P+
Sbjct: 123 PIAFVAEPKIDGLSANLLYVDGRLTLGATRGDGRTGEDVTANLNTIADVKQTLAGDDWPD 182

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242
            IE+RGEVY     F A N    A GR+ YANPRN A+G LR+ +      R LNFF + 
Sbjct: 183 RIEIRGEVYAPNAAFAAFNAAAEAEGRRTYANPRNFAAGSLRQKDARITGKRPLNFFAYA 242

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ S  FA+ Q+E LQK++  GFPVN   R+     G+++ Y E++  R+TL YDIDG+
Sbjct: 243 WGEHSSDFAETQWEALQKLKAWGFPVNARSRRVEGAEGLIAVYRELERDRATLGYDIDGV 302

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKVD    Q++LG  ARSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL PV 
Sbjct: 303 VYKVDRLDWQRRLGFVARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHPVT 362

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG ++ NATLHNED I+ L           D+R+GD V ++RAG+VIP+++ ++ + R 
Sbjct: 363 VGGVVVRNATLHNEDEIERL-----------DVRIGDTVRLQRAGDVIPQILGVVPDLRP 411

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            DA P+ FP  CP+C S  VR+ +          RCTGGL C AQ +ERLKHFV R AF+
Sbjct: 412 ADAVPYVFPDKCPVCGSEAVREGDE------VKRRCTGGLICDAQIVERLKHFVGRRAFD 465

Query: 483 I---------------------------------------EGLGKQQLDFFFKSEDPAFS 503
           I                                       +G G+  +       D    
Sbjct: 466 IEGLGEKQLAAFNARGWIKEPADIFRLARDEARLKELEREDGYGETSIRNLVAGIDARRV 525

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG----- 558
           I +   +F L  R          +    +         +     +  + +    G     
Sbjct: 526 ISLDRFLFGLGIR-DIGEQTSIVLARAFESWPALKAACLQAASGVPSDAWTALAGAHAIS 584

Query: 559 ------------------------------IRHVGAEIARSLAKYYLSYQNFAQEINNII 588
                                            + A   RSLA     +    +      
Sbjct: 585 PRVLTLMAEATPPAADPWPEATMDMKISQAFPGMAAPARRSLATMTGDWSGLVELARVAR 644

Query: 589 AHNNDDWLSLIR-VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
                + L+ I  V  VG + A A+  F+  P N+  V AL  E++  +        + +
Sbjct: 645 EEGPSEILNQIAGVTGVGPVAALALAHFFHEPHNLQVVAALEAELTQILDAERPKSDTPV 704

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +VFTG L++  R +A+     LGA VS  +S+KTD ++ G   GSKL+ A++ GV+
Sbjct: 705 AGKTVVFTGALERFTRDEAKARAESLGAKVSGSVSKKTDYLVAGPGAGSKLKDAEKHGVQ 764

Query: 708 IMNEEQFLFLL 718
           ++ E+++L L+
Sbjct: 765 VLTEDEWLALI 775


>gi|171920195|ref|ZP_02931577.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|171902576|gb|EDT48865.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC
           27813]
          Length = 673

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/712 (30%), Positives = 370/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + ++  L+Q++   +  YY    P + D  YD   R    + + +P    +   N 
Sbjct: 1   MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GG ++    KV H  P LSL   +N +DL+KF        Q    +   + +EPK
Sbjct: 58  PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFDQ----DNQNASVDLKGYVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q +R   F V++ + + +T + +++  +    +R  L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYEPI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 INCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+ +      I+  AD++ LQ+ ++   T    I    + S +NL +SIN  +  SLE
Sbjct: 456 NKFYDAN----LIKNIADLYYLQKHKEFILTSDFKI---KEKSFSNLINSINNSKKCSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ +AK + +     +           ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKIAKQFKTMTALMRA----------NFDELTNVDACGEKAASS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI------ENKKLVFTGTLQKIQRHK 665
           ++ ++ +  N+  V  L +         +      I      +NK  V TG+   I R +
Sbjct: 559 LINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++VG   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLVGTEAGTKLEKAKLLGVKII-ENEFWK 668


>gi|150388772|ref|YP_001318821.1| NAD-dependent DNA ligase LigA [Alkaliphilus metalliredigens QYMF]
 gi|190359225|sp|A6TLU4|DNLJ_ALKMQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149948634|gb|ABR47162.1| DNA ligase, NAD-dependent [Alkaliphilus metalliredigens QYMF]
          Length = 660

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/708 (29%), Positives = 354/708 (50%), Gaps = 60/708 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+  L ++++ +   YY   +PI+ D EYD+L  +   +      +      + P  ++
Sbjct: 5   KEMEQLVKQLNEYSYKYYVLDQPIVSDKEYDSLYDQLIELEEKTGHVLL----DSPTQRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE         H     SL+K    E+L  +  RI +  +   ++ I + +E K DG  
Sbjct: 61  GGEPLKKFQSHQHVALLWSLDKAKTAEELVAWEQRIKKKLES--NHEIEYIVEYKFDGLT 118

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G+ V AA RG+G  GE +   ++ I  IP  L ++    +E++GE  ++ +  
Sbjct: 119 LNLTYENGELVQAATRGNGVVGESIIEQVKTIQAIP--LGVDFNNKMEIQGEGLMAISTL 176

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
              N       ++P  NPRNAA+G LR L+P     R L  F + +G    +  +   +M
Sbjct: 177 AQYN----KTAKEPLKNPRNAAAGALRNLDPKVTAKRKLGAFCYSIGYYEGMEFETHIQM 232

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +  ++   FPV+N ++       ++    E+++    L Y  DG+V KV++   ++ LG 
Sbjct: 233 IDFLKKNRFPVSNYIKSCKGIDQVIEQIREVEAGMKELDYLTDGIVIKVNDLRTREILGY 292

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRW I++KF  ++ +T+L  +  Q+GRTG LTP A+LEPV I G  ++ ATL+N +
Sbjct: 293 TQKFPRWAIAYKFEAQEVTTKLEAVLWQVGRTGKLTPAAQLEPVEIAGVTVSRATLNNWE 352

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            + ++VG +V ++R+G+VIP+++  I  E   +A     P  CP C
Sbjct: 353 DIQR-----------KKVKVGCQVWLRRSGDVIPEIMGAI-EETCEEAVEIEKPQHCPAC 400

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V               C   L+C  Q + R+ H+ SRDA +IEG  ++  +  F+ 
Sbjct: 401 DSEIVHR--------GVHIFCPNSLSCKPQLVSRIVHYASRDAMDIEGFSEKTAEQLFE- 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  ++  A ++ L+        +      FGD    NL D+I + +   L+ FI++L
Sbjct: 452 ---ALGLKNIAALYELKYEDLIQLER------FGDKKAKNLLDAIEESKTCKLDAFIYAL 502

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG + A  LA Y+   +   +           ++  L+ +P +G I+AQ+IV F++
Sbjct: 503 GIPNVGRKTAADLANYFGDLEKIQRA----------NYDELVVLPDIGGIVAQSIVGFFE 552

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           + + I ++E LL E      + +    S    K +V TGTL+   R + Q  + + GA V
Sbjct: 553 DEKIIKSIELLLAEGIKPQHKMKNRQESIFSGKTVVVTGTLENYGRKEIQTLLEEQGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFLL 718
           S  +S+ TD +I GDN GSKL+KAQ++        ++I++E  F  LL
Sbjct: 613 SGSISKNTDFVIAGDNAGSKLKKAQEILESGVETNLQILDEAAFEALL 660


>gi|237799321|ref|ZP_04587782.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022177|gb|EGI02234.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 703

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/720 (31%), Positives = 354/720 (49%), Gaps = 79/720 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   DLR+F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P ++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPGVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L  ++  G PV+  ++ A+     ++YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLNALKKWGMPVSRELKLADGVEECLAYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R   A
Sbjct: 358 VMVANATLHNMDEVARL-----------GVMIGDTVIIRRAGDVIPQVVQVVAERRPDTA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RPVEVPQTCPVCGSHVERTQLIKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I GLG + ++     +     I  PAD++ L+  Q           GF ++S   L 
Sbjct: 467 AMDIGGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIIDLE------GFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +         
Sbjct: 517 KAITDSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY--------- 567

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +P VG  +A  I  F+++  N   ++ALL E    +    +         +   + TL+
Sbjct: 568 -LPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGEL------GAEFAASTTLE 620

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV--KIMNEEQFLFL 717
            +                      K  I +VG     KL  A++ G    I+    +L +
Sbjct: 621 GLID--------------------KLHIPLVGPGAALKL--AEKFGTLEAIIG-ADWLDM 657


>gi|188584367|ref|YP_001927812.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001]
 gi|254781367|sp|B1Z9P1|DNLJ_METPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|179347865|gb|ACB83277.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001]
          Length = 814

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/629 (40%), Positives = 378/629 (60%), Gaps = 31/629 (4%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           + +    +E+LS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   
Sbjct: 3   RTQASAAVESLSEDAAQARHAELSRAIERANHLYYNEDAPELTDAEYDALRQELEAIEAR 62

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP L  + + +     +G + +    KV H++P LSL   +  ED+ +F+ R+ RF    
Sbjct: 63  FPALTGTTEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLT 119

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180
            +  + FT EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  LS  +
Sbjct: 120 AEEPVAFTAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVEDIPATLSGKD 179

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IPE++EVRGEVY+S  DF  +N    A G+  +ANPRNAA+G LR+L+P    +R L FF
Sbjct: 180 IPEVLEVRGEVYLSHEDFAGINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFF 239

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDI
Sbjct: 240 AYAWGEVSEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+
Sbjct: 300 DGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLK 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV+D++++
Sbjct: 360 PVTVGGVVVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVMDVVLD 419

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+
Sbjct: 420 KRPADAVPYVFPETCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRN 479

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTKIEN--- 526
            F++EG G+  ++  F+    A  ++ PAD+F L+          RR+  S  +      
Sbjct: 480 GFDLEGFGQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEP 535

Query: 527 --------ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
                        D ++ NL  S+  RR I+L RF+F+LGI  +G   A++LAK +    
Sbjct: 536 APKKPTKKKGEEEDKAIKNLLASLEARRKIALNRFLFALGIPQIGESTAKALAKRFPDMP 595

Query: 579 NFAQEINNI-IAHNNDDWLSLIRVPLVGD 606
                +          DWL L  +P +G 
Sbjct: 596 ALMAALEAATREQAGRDWLELSALPRIGP 624



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 118/262 (45%), Gaps = 16/262 (6%)

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525
           A++   L  F+   A  I  +G+       K      ++    +  T ++  +     + 
Sbjct: 561 ARRKIALNRFL--FALGIPQIGESTAKALAKRFPDMPALMAALEAATREQAGRDWLE-LS 617

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIF---SLGIRHVGAEIA---RSLAKYYLSYQN 579
            +   G  +   L+++++      L        SLG R  G        ++  +Y S + 
Sbjct: 618 ALPRIGPGTRDRLFETLD-----PLPGEAMQDLSLGARLRGRLTPSQREAVLAHYGSEEE 672

Query: 580 FAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
               +    +    D   L      +G +   ++++F+  P N  AV ALL+EV  +   
Sbjct: 673 ADAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVRALLEEVG-TEPL 731

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                ++    K +VFTGTL+K+ R +A+    +LGA VS  +S KTD+++ G   GSKL
Sbjct: 732 AATTSAAAFAGKTVVFTGTLEKMTRSEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKL 791

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
           + A++ GVK+++E+ +L +L +
Sbjct: 792 KDAERHGVKVVSEDDWLAMLAE 813


>gi|13357678|ref|NP_077952.1| DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762219|ref|YP_001752204.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|183508850|ref|ZP_02958298.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|81549679|sp|Q9PR23|DNLJ_UREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781447|sp|B1AIB0|DNLJ_UREP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|11272940|pir||F82930 DNA ligase UU121 [imported] - Ureaplasma urealyticum
 gi|6899079|gb|AAF30527.1|AE002113_1 DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827796|gb|ACA33058.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|182675825|gb|EDT87730.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC
           33697]
          Length = 673

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/712 (30%), Positives = 369/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + ++  L+Q++   +  YY    P + D  YD   R    + + +P    +   N 
Sbjct: 1   MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GG ++    KV H  P LSL   +N +DL+KF        Q    +   + +EPK
Sbjct: 58  PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFDQ----DNQNASVDLKGYVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +K +ANPRNAA+G LR L+ + +  R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q +R   F V++ + + +T + +++  +    +R  L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYEPI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 INCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+ +      I+  AD++ LQ+ ++   T    I    + S +NL +SIN  +  SLE
Sbjct: 456 NKFYDAN----LIKNIADLYYLQKHKEFILTSDFKI---KEKSFSNLINSINNSKKCSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ +AK + +                 ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKIAKQFKTMTALMHA----------NFDELTNVDACGEKAALS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI------ENKKLVFTGTLQKIQRHK 665
           ++ ++ +  N+  V  L +         +      I      +NK  V TG+   I R +
Sbjct: 559 LINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++VG   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLVGTEAGTKLEKAKLLGVKII-ENEFWK 668


>gi|296128966|ref|YP_003636216.1| DNA ligase, NAD-dependent [Cellulomonas flavigena DSM 20109]
 gi|296020781|gb|ADG74017.1| DNA ligase, NAD-dependent [Cellulomonas flavigena DSM 20109]
          Length = 824

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/821 (26%), Positives = 354/821 (43%), Gaps = 125/821 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + R   ++L ++I      YY    P   D+ YD   R  + +    P L     P+ 
Sbjct: 14  PAEVRHRWTALAEQIRADQFAYYVRDAPSSSDAAYDERMRELERLEDEHPGL---RTPDS 70

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG  +     V H    LSL+  ++ EDL  +  R+ R  +      + +  E K
Sbjct: 71  PTQQVGGTFSTEFTAVDHVERMLSLDNAFSREDLVAWAERVQRDLESTV--PVEYLCELK 128

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVRGE 190
           IDG  I + YEKG+ V AA RGDG +GEDV+  +R I TIP VL  +    P++IE+RGE
Sbjct: 129 IDGLAIALLYEKGRLVRAATRGDGRTGEDVTLNVRTISTIPDVLGGDPATHPDVIEIRGE 188

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG-----LG 244
           V++  + F ALN+  +A GR P+ANPRNAA+G LR+ +P     R L  + HG      G
Sbjct: 189 VFLPVDAFRALNEAQVAAGRAPFANPRNAAAGSLRQKDPRVTAARPLRMYAHGIGALTWG 248

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                    Q ++   +   G P +   R   +   +          R  + ++IDG+V 
Sbjct: 249 DGRGTGIDRQSQVYDLLAGWGVPTSTHTRVVGSLDEVWDRVAHFGEHRHDVEHEIDGVVV 308

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+ +LQ++LG  +R+PRW I++K+  ++ +TRLL I++ IGRTG  TP A +EPV + 
Sbjct: 309 KVDDIALQRRLGATSRAPRWAIAYKYPPEEVNTRLLAIELGIGRTGRATPFAVMEPVLVA 368

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ +  ATLHN+D +K                  D V++++AG+VIP++V         D
Sbjct: 369 GSTVRQATLHNQDVVKVKGVRVG-----------DMVVLRKAGDVIPEIVGPAPQAPDDD 417

Query: 425 AQ--PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                +  P+ CP C + +         +     RC     C AQ   RL+H  SR AF+
Sbjct: 418 VPRVEWHMPADCPECGTPL-----RPMREGDVDLRCPNAQGCPAQVRGRLEHIGSRGAFD 472

Query: 483 IEGLGKQQLDFFFKSEDPAF-----------SIRIPADI--FTLQRRQQTSTTKIENIL- 528
           IE LG+       + E P              +  PAD     ++R +  S  ++  +  
Sbjct: 473 IEVLGEVTAAALTQPEVPEVPPVPNEAYLFDLVGYPADAPPEEVERVRSASLARLAEVEV 532

Query: 529 -------GFGDVSVTNLYD----------------------------------------S 541
                  G                                                    
Sbjct: 533 VVRDAETGLPKEDADGTVRRRTPFRRTLKHTRAQRAAAEAAGRTLPDWEPSEAARTLLDQ 592

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR- 600
           ++  +   L R I +L IRHVG   AR+LA+ + S       ++       D     +  
Sbjct: 593 LDLAKTKELWRAIVALSIRHVGPTAARALAQEFGSMAALRAVVDPTARGAVDAPQEAVDG 652

Query: 601 -------------------------------VPLVGDIIAQAIVEFYQNPRNICAVEALL 629
                                          V  VG  IA+++++++  P +   V+   
Sbjct: 653 GAVADDAVEGSIADEDGAPAADAAAVARLAGVEGVGPTIARSLLDWFAEPWHREIVDRWA 712

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
                     +++    +E   +V TG+L++  R  A+E +   G   S  +SRKTD ++
Sbjct: 713 AAGVVMQDAVDESTPRTLEGVTVVVTGSLERFSRDGAKEAILGRGGKASGSVSRKTDFVV 772

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
           VG+N GSK  KA++LG++I++E  F  LL      +   D+
Sbjct: 773 VGENAGSKETKARELGLRILDEAGFEALLAHGPGAVVPPDE 813


>gi|327541957|gb|EGF28460.1| NAD-dependent DNA ligase LigA [Rhodopirellula baltica WH47]
          Length = 754

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/727 (30%), Positives = 364/727 (50%), Gaps = 64/727 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +     +  L  EI+ H+  YY  + P I D +YD L      + + +P+L     P+ P
Sbjct: 58  DSIASRVQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENEYPEL---RQPDSP 114

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG++   L +V H +P LS++  ++ E+L   + RI +     +  S+ +T+E KI
Sbjct: 115 TQLVGGDVVDQLVQVPHRVPMLSIDNTYSREELAAAMERIEKSL---EGESVAWTMEYKI 171

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----------SLNIPE 183
           DG   +IRYE G+   A  RG+G  G+D++  +R I  +PR +             N+PE
Sbjct: 172 DGVAGSIRYENGELTLALTRGNGQVGDDITHNVRTIRELPRSIADAALAHPEVADGNVPE 231

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
           ++EVRGE+Y++  D   LN      G +P+ N RN  +G +R L+P     R + FF HG
Sbjct: 232 VLEVRGELYMTDADLADLNVRQTEAGHEPFKNTRNVTAGTIRLLDPKIAASRNIRFFCHG 291

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+   + A      L+ ++ LG P+   V +       +    +++     LP++IDG+
Sbjct: 292 SGELVGVQASDHMTFLEHVQALGIPIAPDVVRFENKENALQAIAKLELEMPDLPFEIDGI 351

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KVD F  +++LG R++SPRW+I++KF   +A T L  ID+Q+G+TG +TPVA L PV+
Sbjct: 352 VFKVDSFEQREKLGVRSKSPRWVIAYKFERYEAITTLEAIDVQVGKTGTITPVAYLTPVD 411

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I    ++ A+LHN D I+ L           D+RVGD V+V++AG++IPKVV +  + R 
Sbjct: 412 IADTTVSRASLHNADEIERL-----------DVRVGDTVVVEKAGKIIPKVVRVEKHART 460

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                F FP+ CP C   + RD      +     RCT   AC AQ  +RL +F SR   +
Sbjct: 461 KPLPKFEFPTHCPQCDEVLTRD------EGGVYIRCTNP-ACPAQLRQRLVYFGSRTGMD 513

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG---------FGDV 533
           I+GLG++ +D   + E     +   AD++ L   +    T      G         FG  
Sbjct: 514 IDGLGEEVVDLLLQKE----LVENYADLYRLNVDELAELTWPRLRKGKGDEMIEVQFGRK 569

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +  +L   IN+ R   L R + S+ IRH+G  +A+ +   + +           +A    
Sbjct: 570 NAESLVAGINESRTRGLARVLSSISIRHIGPRVAKLITAKFWNLDLLRSAKAEDLAA--- 626

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIE 648
                  +  +GD IA+++V+F  +      +  L                       + 
Sbjct: 627 -------IHEIGDRIAESLVKFIHSESGSQTLSDLDAVGVTMSEPEPVATPDEEANLPLA 679

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTLQ   R + +  + +LG   ++ +S+KTD +I G+  GSKL KA+ LGV++
Sbjct: 680 GKNIVATGTLQHYTRDEIKARIEELGGRAASSVSKKTDFLIAGEKAGSKLTKAESLGVEV 739

Query: 709 MNEEQFL 715
           ++E+ F 
Sbjct: 740 LSEDDFR 746


>gi|229591993|ref|YP_002874112.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens SBW25]
 gi|254781395|sp|C3JXX6|DNLJ_PSEFS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|229363859|emb|CAY51325.1| DNA ligase [Pseudomonas fluorescens SBW25]
          Length = 785

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/662 (32%), Positives = 341/662 (51%), Gaps = 51/662 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A   +  L  E+  H+  Y+   +P I D+EYD L     A+    PDL      + 
Sbjct: 1   MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTR---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H IP LSL   ++   + +F  R+                ++ 
Sbjct: 58  PTQRVGSAALSAFTQVKHDIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186
           ++ EPK+DG  +++ Y+ G+ V  A RGDG +GED+S  IR +  IP  L     P  +E
Sbjct: 118 YSCEPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNIRTVRNIPLKLHGSGWPATLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+     +R L F  +G+  
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGV-- 235

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +   +      LQ+++  G P+++ ++ A      + YY ++   R++LPY+IDG+V+K
Sbjct: 236 -TTDISDTHIGNLQQLKKWGMPISHELKLAKGIQDCLDYYRDIGERRNSLPYEIDGVVFK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 295 VNSIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 355 VTVSNATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVSVVPERRPENA 403

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + HFVSR 
Sbjct: 404 RAVQIPESCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRR 463

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I+GLG + ++     +     I  PAD++TL+  Q           GF D+S   L 
Sbjct: 464 AMDIDGLGDKTIEQLVDEK----LIGSPADLYTLKYEQIIDLE------GFADISSKKLI 513

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  +L RFI++LGI  VG E A+ LA+   S +   + +  ++ +         
Sbjct: 514 TAIENSKTPTLARFIYALGIPDVGEETAKVLARSLASLERVQKALPEVLTY--------- 564

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +P VG  +A  I  F+++  N   + ALL   +  +   ++   S          G L 
Sbjct: 565 -LPDVGLEVAHEIHSFFEDSHNQDVIGALLSPQACGLQLQDQGELSAEFAASTTLGGLLD 623

Query: 660 KI 661
           K+
Sbjct: 624 KL 625



 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 16/187 (8%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
               + +L   +  L +  VG   A+ LA  +++ +   +           DWL + +  
Sbjct: 611 EFAASTTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKA----------DWLDMRQA- 659

Query: 603 LVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL 658
            + +  A+A+ EF+ N  N     A+E  LK+        +K V          V TG+L
Sbjct: 660 -LPEKQAKAVREFFDNADNANHALAIEQQLKDFGMHWDSEKKVVEGLPEAGHTWVLTGSL 718

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG+K+++EE F+  L
Sbjct: 719 ELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFL 778

Query: 719 QQYNTTL 725
            ++N  +
Sbjct: 779 AKHNIPV 785


>gi|332665881|ref|YP_004448669.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334695|gb|AEE51796.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100]
          Length = 711

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/719 (31%), Positives = 375/719 (52%), Gaps = 54/719 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            ++ + L   I YH+  YY  + P++ D EYD L +  + +    P+L      + P  +
Sbjct: 30  AQQHAELCGLIIYHEWRYYIQNDPVLSDYEYDQLFKLLERLEEVHPELV---SADSPSQR 86

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +  ++     +V H IP LSL   +N EDL  +   I RF     D  + + +EPK DG 
Sbjct: 87  VSADLTEDFSQVEHLIPMLSLANSYNAEDLNDWDASIKRFLNIDPDTDLDYGVEPKFDGG 146

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISK 195
            I + YE    V AA RG+G  GE+++   + I +IP     +      +E+RGEV I K
Sbjct: 147 SIALVYENDVLVRAATRGNGIIGEEITNNAKVIRSIPLRAEFSKYGIHRVELRGEVLIRK 206

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE------ 248
           + F  +N +  A G   +AN RN A+G LR  +P ++  R L  F++ LG  ++      
Sbjct: 207 DIFEKMNAKRAAEGITLFANARNTATGGLRIKDPKEVAKRGLEAFIYTLGYATDQAGNNM 266

Query: 249 -IFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   E L+ +  LGF V     +       ++ + N  +  R    Y+IDG+V KV
Sbjct: 267 LNQFATHLESLELLEKLGFKVPVQERKLCKNIQEVIDFCNYWQQQRDGYAYEIDGMVAKV 326

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +   LQ++ G  +  PRW I+ KF  KQA+++LL+++ Q+G+ G +TPVA+LEPV + G 
Sbjct: 327 NSRELQERSGFTSHHPRWAIAFKFQAKQATSKLLNVEYQVGKIGSITPVAKLEPVQLAGV 386

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +++ +LHNED+I             RD+R+GD VLV+RAG+VIP +V  +   R     
Sbjct: 387 TVSSVSLHNEDFITS-----------RDLRLGDTVLVERAGDVIPYIVKAMDELRDGSEV 435

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP FCPI  +    +L  +  +  AA RC   + C  Q L+R+   VS+DA +I+G+
Sbjct: 436 PIVFPQFCPINDTDTPVELLREGEE--AAWRCPNCV-CGQQDLQRIIFHVSKDAMDIDGM 492

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           GKQ ++ FF+       +R  AD++ L        T++  + GFG+ S T L  +I K +
Sbjct: 493 GKQIVERFFE----LGWVRNFADVYNL------DFTQVAQLEGFGEKSATKLQAAIEKAK 542

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              + R ++SL I H+G ++++ LA           EIN+++   +       ++  VG 
Sbjct: 543 KNPISRVLYSLSIHHLGKKVSKLLAA----------EINHVLDLKDWQIEDYTKIKDVGP 592

Query: 607 IIAQAIVEFYQNPRNICAVEAL-----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           ++A   +EF+QN  NI  ++ +         +        +  + +  K ++FTG+L K+
Sbjct: 593 VVAANAIEFFQNELNIELIQQMEALGVNLHQTEEDKPKAASADAPLAGKTILFTGSLAKM 652

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
            R +AQE     GA   + +S+  DI++VG+  GSKL+KA++LG V I+ E++FL +L+
Sbjct: 653 GRKEAQEKAEAAGAKNISAVSKNLDILVVGEEAGSKLKKARELGTVMILTEDEFLAMLE 711


>gi|148284934|ref|YP_001249024.1| NAD-dependent DNA ligase LigA [Orientia tsutsugamushi str. Boryong]
 gi|166216222|sp|A5CEY0|DNLJ_ORITB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146740373|emb|CAM80812.1| NAD-dependent DNA ligase [Orientia tsutsugamushi str. Boryong]
          Length = 698

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/720 (35%), Positives = 416/720 (57%), Gaps = 32/720 (4%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
             I IE L+ + A+K +  L  E+  +D  YY  + P++ D++YD LK   + I   FP 
Sbjct: 7   STINIEQLTSDHAKKIVDFLALELQKYDQAYYSDNNPLVTDAQYDVLKNLNNKIVAKFPH 66

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           LA   D +    K+G   +    KV H  P LSL   + +ED+  FIT+I  F +   D+
Sbjct: 67  LALVNDHS---KKVGFTPSAQFSKVVHLKPMLSLANGFCVEDISNFITKIQNFLKI--DH 121

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                 E KIDG     RYE G    A+ RGDG  GE+++  ++ I + P+ L +   ++
Sbjct: 122 CPKIVCEYKIDGLSFNARYEYGVLTLASTRGDGQIGENITENLKTIQSFPQTLPITD-KV 180

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
            EVRGE+YI+ NDF  LN +   +G+  ++NPRNAA+G +R+L+P     R L +FV+ L
Sbjct: 181 FEVRGEIYITNNDFRVLNIQQQKLGKALFSNPRNAAAGSIRQLDPAITAQRPLKYFVYAL 240

Query: 244 GKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ +   FA  Q+E+LQK+  L F VN     ++  H ++ +YN + + R+ L ++IDG+
Sbjct: 241 GEVTNHHFASTQFELLQKLSQLKFSVNTDYILSDNLHSMIEFYNNVATERNNLAFEIDGV 300

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKV++F+LQ++LG  + SPR+ I++KF      T++ +I +Q+G+TG +TPVA L P+N
Sbjct: 301 VYKVNDFALQERLGATSTSPRFAIAYKFPALIGRTKITNITLQVGKTGAVTPVALLIPIN 360

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I G  I+ ATLHN+  I+            +DIR+GD V + RAG+VIPK+  + ++ R 
Sbjct: 361 IAGVTISRATLHNKQEIES-----------KDIRIGDYVFLHRAGDVIPKINGVDLSARD 409

Query: 423 PD-AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              +  F FP+ CP C   +V       G+ VA  RC   LAC AQ  ER+ HFVS+DA 
Sbjct: 410 AQSSTRFIFPATCPSCNQNLV----VNEGETVA--RCGNSLACPAQIYERICHFVSKDAL 463

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR-RQQTSTTKIENILGFGDVSVTNLYD 540
           NI+GLG+Q++ F   ++     I    DIF L+   +  S+ K+E+I G+G  SV  L+ 
Sbjct: 464 NIDGLGRQRIRFLLDNK----YIVNIVDIFLLEENNKLLSSNKLEDIAGWGIKSVNKLFK 519

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +IN+ +N+ L+RFI++L ++HVG   A+ LAK + + +NF  +   +  +  + +  L  
Sbjct: 520 NINQAKNVILDRFIYALAVKHVGKYSAKLLAKEFKTAKNFIDQSLKLANNVTEIYEKLCN 579

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G   A  + +F+    N+  +  L+  ++          +  + N+ +VFTGT   
Sbjct: 580 IEGLGVKTADQLKQFFMVSANVNLITKLVNILTIQ-DWQYHGDNLLLSNQTIVFTGTFAT 638

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R + +    +LGA V   +S  TD+++VG+  G+KL+KAQQLG+KI+NEE+++ ++ +
Sbjct: 639 VSRSEIKVQAEKLGAKVGTQVSNNTDLLVVGNKAGNKLQKAQQLGIKIINEEEWIKMVNE 698


>gi|330973309|gb|EGH73375.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 670

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q           GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIIDLE------GFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           ++I   R  +L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +         
Sbjct: 517 NAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY--------- 567

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +        E   S+ +E  
Sbjct: 568 -LPDVGLEVAYEIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622


>gi|167647059|ref|YP_001684722.1| NAD-dependent DNA ligase [Caulobacter sp. K31]
 gi|190359242|sp|B0T1N5|DNLJ_CAUSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167349489|gb|ABZ72224.1| DNA ligase, NAD-dependent [Caulobacter sp. K31]
          Length = 792

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/804 (33%), Positives = 396/804 (49%), Gaps = 109/804 (13%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +  L+  QA +EL  L  +++ HD  Y+Q   P I D+EYDALKRR   I   FP L 
Sbjct: 4   IAVADLTEAQAAEELERLADDLAAHDLRYHQQDAPTISDAEYDALKRRNLDIEDRFPHLV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    N P  ++G         V H +P LSL+  ++ ++  +F  RI RF +   +  +
Sbjct: 64  RD---NSPSMRVGAARAEQFSPVEHGVPMLSLDNAFSNDEATEFDARIRRFLRLT-NEPV 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------SLN 180
           F+T EPKIDG   ++RYEKG  V  A RGDG  GEDV+A +R I  IP  L         
Sbjct: 120 FYTAEPKIDGLSASLRYEKGVLVQGATRGDGRMGEDVTANLRTIADIPHRLRGGDPQGGG 179

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P++IE+RGEVY+    F A N   +  G++ YANPRN A+G LR+++P     R L FF
Sbjct: 180 WPDVIEIRGEVYVELEAFAAFNAAALEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFF 239

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +  G TSE FA  Q+E L K+R  GF        +     G++  Y + +  R  L +D
Sbjct: 240 AYAWGLTSEGFAATQWEALGKLRDWGFVTTAPPAERVQDAQGLLDIYAKFEVERPKLAFD 299

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD+   Q++LG  +RSPRW I+ KF  +QA T L  ID+Q+GRTG +TPVARL
Sbjct: 300 IDGVVYKVDDLEQQRRLGFVSRSPRWAIARKFPAQQARTILEAIDLQVGRTGAITPVARL 359

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV +GG  +TNATLHN D I             +D+R+GD V+++RAG+VIP++V  ++
Sbjct: 360 KPVTVGGVSVTNATLHNADEIAR-----------KDVRIGDTVILQRAGDVIPQIVGPVL 408

Query: 419 NERHPDAQPFSFPSFCPIC-QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            ER   A PF FP+ CP   ++ +VR+ +   G      RC+G  AC  Q++E L+HFVS
Sbjct: 409 EERPAGAVPFEFPTHCPCHLETPLVRE-STAAGAETVVRRCSGEFACPFQRIEHLRHFVS 467

Query: 478 RDAF-----------------------NI----------------EGLGKQQLDFFFKSE 498
           R AF                       +I                +G G+  +    K  
Sbjct: 468 RRAFDIEGLGEKQLAAFFEEGWIKEPADIFKLARDEAKLAELRERDGYGETSVANLVKGI 527

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI-----SLERF 553
           +   +I +   I+ L  R    TT       F        ++ +               +
Sbjct: 528 EARRTIGLDRVIYGLGMRDIGETTSTVLARNFASPKGKGGFEDLQAAAERAAGQLPGAVY 587

Query: 554 IFSLGIRHVGAEI-------------------------------------AR-SLAKYYL 575
           +   G   VG +                                      AR +LA+ Y 
Sbjct: 588 LELAGAPGVGPKARDELVEAGKGGLKADPWPEADSLEVKIGHAVPKLSKPARVALAERYG 647

Query: 576 SYQNFAQEINNIIA-HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
            +  FAQ +         +D+L L  +  +G + AQ+I  F+    N   V  L+ E+  
Sbjct: 648 DWDTFAQALAQAGQGAPGEDYLQLAAIDGIGPVAAQSIARFFAEAHNREKVANLIAELDI 707

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                 K   + +  K +VFTG L+K+ R +A+     LGA V++ +S+KTD+++ G   
Sbjct: 708 QPVAKPK-TDTAVAGKTIVFTGALEKMTRDEAKAQAEGLGAKVASSVSKKTDLVVAGPGA 766

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLL 718
           GSKL+ A +LG+++M E+++L ++
Sbjct: 767 GSKLKTATELGIQVMTEDEWLAMV 790


>gi|291277000|ref|YP_003516772.1| DNA ligase [Helicobacter mustelae 12198]
 gi|290964194|emb|CBG40040.1| DNA ligase [Helicobacter mustelae 12198]
          Length = 669

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/716 (31%), Positives = 365/716 (50%), Gaps = 64/716 (8%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K ++   +E       +++     +++      YY    PI  D EYD L         A
Sbjct: 13  KSKKETSME-------KEQYEKKVEQLKKMAYHYYVLDDPISSDEEYDILYHEVKGYEEA 65

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
            P+  R    + P  ++G    L   K TH     SL+ +++ E+L  +  +IY+     
Sbjct: 66  HPEAIRE---DSPTQRVGMPPLLEFQKNTHRKKMWSLDDVFSFEELESWCQKIYK----- 117

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
           +     FT  PK DG  + + YE G  + A  RGDG  GE V+   + IP+IP  L +  
Sbjct: 118 NHPEAIFTCSPKFDGASLNLLYENGDLISATTRGDGMQGELVTQNAKTIPSIP--LKIPH 175

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240
             +IE+RGEV I+K+DF ALN + +  G   +ANPRNAA+G +R+L+ +    R L F  
Sbjct: 176 KGLIEIRGEVVIAKSDFEALNKKRMEEGEALFANPRNAAAGSMRQLDSSITAQRKLRFIP 235

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
            G G+ + +      E L+++ C GF     V+       I  YY E+   R  LP  +D
Sbjct: 236 WGFGQHT-LGIDSFKEALEQVFCFGFSPIPFVQLCKNMQEIQRYYEEIMQRREDLPMMLD 294

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V  +D F +Q+++G   +SPR+  ++KF   +  T++L I  Q+GRTG++TPVA LEP
Sbjct: 295 GMVVMLDSFLMQEKMGFTIKSPRFACAYKFPAVEKFTKILSIINQVGRTGVITPVAELEP 354

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           + I GA +T ATLHN   I+            +DIR+ D V+V R+G+VIPK++   +  
Sbjct: 355 IEIEGARVTRATLHNYKEIQK-----------KDIRIFDEVVVIRSGDVIPKIIRPNIAR 403

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  + +    P+ CPIC  R++ +            RC   L C+A+  E + HFVS+ A
Sbjct: 404 RTGEEKAIEPPTHCPICGERLLIEE--------IFIRCQN-LQCTARVRESIVHFVSKKA 454

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NI+GLG++ +   F     A  ++   D+++L   +           GF +    NL +
Sbjct: 455 LNIDGLGEKIIYQLF----AAGLVKNITDLYSLDYEELLRLE------GFKEKKAKNLLE 504

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   +NI L R I +LGI H+G   ++ LA  +   + F ++ + +            R
Sbjct: 505 AIANTKNIDLWRLIHALGIEHIGEGASKKLALAFG-LECFDKDYDAL-----------TR 552

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +   G  +A++ +EF  +  N   +  LLK ++P + + +  V +    KK+V TG++Q+
Sbjct: 553 IDGFGKEMAESFLEF--SQVNARLIHVLLKILTPKVQQTQNPVQNYFSAKKIVLTGSMQR 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             R +    +  +GA +S  +S K D +I G+NPGSKL+KA++LGV I++E +F  
Sbjct: 611 -SREEVAALLEGVGAKISTSVSGKVDFVIYGENPGSKLDKARELGVGILSEAEFWE 665


>gi|224372650|ref|YP_002607022.1| NAD-dependent DNA ligase LigA [Nautilia profundicola AmH]
 gi|254781379|sp|B9L8R4|DNLJ_NAUPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|223589900|gb|ACM93636.1| DNA ligase, NAD-dependent [Nautilia profundicola AmH]
          Length = 656

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/699 (29%), Positives = 343/699 (49%), Gaps = 55/699 (7%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
              +      YY    P++ D EYD L    +      PD     DP  P  ++G  +  
Sbjct: 12  VDTLKKWAYYYYVLDNPLVTDEEYDKLYHEVEEYEKKHPDKI---DPTSPTQRVGDVVLE 68

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
              K  H     S+E ++N +D   ++ R+ R        +  F +EPK DG  + + YE
Sbjct: 69  GFEKAKHLSRMWSMEDVFNEKDFLDWVGRVKRILG---HENFSFYIEPKFDGASLNLIYE 125

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            GK + A  RGDG  GEDV+   + I +IP  L +    +IE+RGEV I K+DF  LN+E
Sbjct: 126 NGKLIRAETRGDGEIGEDVTLNAKTINSIP--LEIKEKSLIEIRGEVVIKKDDFDKLNEE 183

Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
            +  G   +ANPRNAA+G LR+L+P     R L F+  G+G  S +  +   E++  +  
Sbjct: 184 RLKNGEPTFANPRNAAAGSLRQLDPKITAKRPLIFYPWGVGVNS-LNYERYSELMDYIYS 242

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           LGF              +   Y+E   +R +    +DG+V K+DE      LG   + PR
Sbjct: 243 LGFKEPPKRGVCKDIPCVEKKYDEFVKLRDSFEVMLDGMVVKIDEIKYHDILGYTQKYPR 302

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           WM+++KF   +  T + D+ +Q+GRTG+LTPVA L+PV IGG ++  ATLHN D I+ + 
Sbjct: 303 WMVAYKFPAIEKETIIEDVIVQVGRTGVLTPVAVLKPVEIGGVIVERATLHNFDEIERM- 361

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                     DIR+GD V+V R+G+VIPK+  ++  +R  D +P   P+ CP+C + V+ 
Sbjct: 362 ----------DIRIGDHVIVIRSGDVIPKITKVLTWKRKGDEKPIPRPTHCPVCGAEVL- 410

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
                     A  +C   L+C A+ +  + +F S++  +IEGLG+      ++       
Sbjct: 411 -------DEGALIKCQN-LSCPARVVNTIIYFASKNCLDIEGLGESVAKLLYEH----GL 458

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           ++   D+F L+          E +  F      NL ++I  +  +   RF+ +LGI H+G
Sbjct: 459 VKDVTDLFELKVEDL------EKLPLFARKKAENLVNAIKSKVGVECWRFVNALGIEHIG 512

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              ++ + + +         +        +        P +   IA+ I        N  
Sbjct: 513 EVASKKICEKFG--------VEFYKHAPEEFEEIEGFGPEMVKSIAEYIR------VNKE 558

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            +E L++ + P     ++   +    K +V TGT+ K  R + ++ +  +GA VS+ +S+
Sbjct: 559 KIEKLIEILKPKNPEKKEVQKTPFTGKTVVLTGTMSKP-RSEIKKMLEDMGAKVSSSVSK 617

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           KTD +I G++ GSK +KA++LGV +++E+    +L++  
Sbjct: 618 KTDFVIYGEDAGSKYDKAKKLGVNLLSEDDMWKMLKEGK 656


>gi|303232470|ref|ZP_07319159.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4]
 gi|302481435|gb|EFL44506.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4]
          Length = 836

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/778 (31%), Positives = 360/778 (46%), Gaps = 95/778 (12%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
            +Q  P++      A   +  L + ++YH   YY    P+I D+++DA  +   A+  A 
Sbjct: 83  SQQEPPVDT-HATVAALRVPELRRLLTYHAWRYYALDDPLISDAQFDAYLQELIALEQAH 141

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+LA    P     ++GG ++      TH+    S++   N+++L  ++ R      K  
Sbjct: 142 PELA---SPTSYTQRVGGFVSRQFAACTHAKRMYSIDDAMNLDELDLWLERTCDALAKLA 198

Query: 123 DN-------------------------------SIFFTLEPKIDGTMITIRYEKGKFVYA 151
           ++                               S  FT E KIDG  I + YE G+FV A
Sbjct: 199 ESYEDASAPVPEGTSAAAQAAADARARMRKALLSPTFTCELKIDGLGIALTYESGQFVRA 258

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSL---------NIPEIIEVRGEVYISKNDFLALN 202
           A RGDG  GEDVSA +  I  +PR L            +   +EVRGEVY+ K  F+ LN
Sbjct: 259 ATRGDGAVGEDVSANVLTIADVPRALKPQGLAHVRNSGLNYALEVRGEVYMPKQSFVRLN 318

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           +E  A G   +ANPRNAA+G LR+ NP     R L  F++ +     +    Q+E L  +
Sbjct: 319 EEADAQGTATFANPRNAAAGSLRQKNPEITAHRDLKTFMYAVATRDGLDVHTQHEFLAWL 378

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
              GF  N      ++   +  +       RS L YDIDG+V KVD+ + Q  +G  AR+
Sbjct: 379 ASCGFSTNTKFATCHSAREVHDFCKRALEHRSELDYDIDGVVVKVDDMAAQDAMGFTARA 438

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF  +Q  T L DI IQ+GRTG+LTPVA  EPV + G+ I  ATLHN D +  
Sbjct: 439 PRWAIAYKFPPEQKQTLLRDICIQVGRTGVLTPVAEFEPVLVAGSTIARATLHNLDEVTR 498

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN----ERHPDAQPFSFPSFCPIC 437
                      RD+RVGD ++V +AG+VIP+VV  ++     E H     +  P  CP C
Sbjct: 499 -----------RDVRVGDTIIVHKAGDVIPEVVGPVLEGAMAEAHAARPRWQMPRVCPSC 547

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S VV++          A RC   + C AQ  ERL H+VSR A +I+GLG++ +      
Sbjct: 548 GSSVVQEDGE------VAFRCV-SIDCPAQAKERLVHWVSRKAMDIDGLGEELIIKLIGR 600

Query: 498 EDPAFSIRIPADIFTLQ-----------RRQQTSTTKIENILGFGDVS--VTNLYDSINK 544
                 +R  AD +              R  +TST            S   T +Y  I  
Sbjct: 601 S----LVRDVADFYDRLTCDMIAKLDTGRYYKTSTGAHNEGDPILVGSTVATKIYAQIEA 656

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +   L R +F LGIRHVG  +A  +A Y  S           IA           +  V
Sbjct: 657 SKQAGLARVLFGLGIRHVGQNVAGLIAAYAGSLSQLMAAQPTEIA----------SIDGV 706

Query: 605 GDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G  IA+++ +F    +N   +       V  S        +  +     V TGTL  + R
Sbjct: 707 GPKIAESVHKFLSIEQNRTVITRLAAAGVRLSEREDAAPTAQTLHGYTFVLTGTLDGMAR 766

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             A + +  LGA VS  +S+KT  +I G+N GSKL++A +LGV ++ + +   +L+Q 
Sbjct: 767 TDAADALRALGAKVSGSVSKKTSFVIAGENAGSKLDRAHELGVCVIGKPELDEILRQG 824


>gi|239994967|ref|ZP_04715491.1| DNA ligase, NAD-dependent [Alteromonas macleodii ATCC 27126]
          Length = 593

 Score =  655 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/632 (35%), Positives = 349/632 (55%), Gaps = 45/632 (7%)

Query: 98  LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
           ++  ++ E L  F  R+    +  D  ++ F+ EPK+DG  ++I YE G+ V AA RGDG
Sbjct: 1   MDNAFDEESLLAFEKRLKDRLK--DSATLDFSCEPKLDGLAVSILYENGELVRAATRGDG 58

Query: 158 HSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216
             GE+++A +R I  +P  L   + PE +EVRGEV++ +  F  LN+     G K +ANP
Sbjct: 59  QVGENITANVRTISNVPLTLRGEHYPERVEVRGEVFMPREGFAKLNEHQKETGGKVFANP 118

Query: 217 RNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI---FAKGQYEMLQKMRCLGFPVNNGV 272
           RNAA+G LR+L+      R L F+ + LG              E L+++   G P+   +
Sbjct: 119 RNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPESFELPTTHSERLKQLGNWGLPLCPDI 178

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
             A    G ++YYN +   R +LPYDIDG+V+KV+   LQ  LG  AR+PRW I+ KF  
Sbjct: 179 DTAEGGKGCLAYYNHILEKRDSLPYDIDGVVFKVNRIDLQDALGFVARAPRWAIAQKFPA 238

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++NATLHN+D I  L          
Sbjct: 239 QEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDEISRL---------- 288

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
             ++VGD V+++RAG+VIP+VV ++   R       +FPS CP+C S+V +  +      
Sbjct: 289 -GVKVGDTVVIRRAGDVIPQVVSVVEANRTGSETDITFPSQCPVCDSQVEKLEDE----- 342

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
            A  RCTGGL C+AQ+ + LKHF SR AF+I+GLG + +D        A  +  PAD FT
Sbjct: 343 -AVARCTGGLICAAQRKQALKHFASRKAFDIDGLGDKLVDQLVD----ADLVHSPADFFT 397

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L      S   +  +    + S + L  S+   +  +L +F+++LGIR VG   A +LA 
Sbjct: 398 L------SLGDVVGLERMAEKSASKLLASLEASKQTTLAKFLYALGIREVGEATAANLAA 451

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
           ++ + +          A       +L+ V  VG+++A  I  F+    N   ++ALLKE 
Sbjct: 452 HFETLE----------AIREASLEALVEVQDVGEVVATHIFNFFNESHNTDVIDALLKEG 501

Query: 633 SPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                  + +  +  +E K  V TGTL ++ R  A+  +  LGA V+  +S+ TD ++ G
Sbjct: 502 INWPAIEKPDSDNLPLEGKTCVITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAG 561

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +  GSKL KAQ+L V++ +E   +  L ++  
Sbjct: 562 EKAGSKLTKAQELDVEVWDEAALIAFLSEHEK 593


>gi|110669547|ref|YP_659358.1| NAD-dependent DNA ligase LigA [Haloquadratum walsbyi DSM 16790]
 gi|109627294|emb|CAJ53784.1| DNA ligase (NAD) [Haloquadratum walsbyi DSM 16790]
          Length = 770

 Score =  655 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/723 (32%), Positives = 381/723 (52%), Gaps = 56/723 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             PIE LS E A ++ + L + I  HD  YY  + PII D  YD L  R  A+   F   
Sbjct: 97  FRPIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILFDRLQALEDIF--- 153

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              +    P  ++GGE    L  V H    LS+++   ++ +R F  R+           
Sbjct: 154 -NLDTEASPTRRVGGEPLDELETVEHVTSMLSIDQSTAVDSVRDFDERVRDV-----VGD 207

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  EPK DG  + + YE G+++ AA RGDG+ G+DV+A +  +  +P  L  + P  +
Sbjct: 208 LEYICEPKFDGLSVEVIYEDGEYIRAATRGDGNRGDDVTAQVETVGAVPLKLHGDYPSYL 267

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
            VRGEVY+ K  F   N E I    KP+ANPRNAA+G LR+L+P  +  R L+ F + + 
Sbjct: 268 AVRGEVYMPKAGFREYNRERIECDEKPFANPRNAAAGTLRQLDPGVVAERPLSCFFYDIL 327

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             +E+    Q+  L  ++  G   N+ + + ++    ++Y +++K+ R+ L Y+IDG V 
Sbjct: 328 DATELPPD-QWTTLNDLQSWGLRTNDRISRVDSIDDAIAYRDQLKAARAELNYEIDGTVI 386

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++   ++ LG  +RS RW  ++KF  +   T + DI +Q+GRTG LTPVA L+PV++G
Sbjct: 387 KVNDRGNREILGATSRSVRWAFAYKFPPRAEITHITDIVVQVGRTGRLTPVALLDPVDVG 446

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+LHN + IK L  +            GD V V+RAG+VIP+V ++   +R   
Sbjct: 447 GVTVSRASLHNPEEIKRLSVNS-----------GDEVRVRRAGDVIPEVAEV-TQKRA-- 492

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              F+FP+ CPIC S V +D             CTGGL C AQ +  + H+ SR A +I+
Sbjct: 493 TGTFNFPNQCPICHSSVEQD--------GPLAFCTGGLTCDAQLVRTIVHYGSRSALDID 544

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG+Q+++   +S      I   AD++TL      S   +  + G+G  S  NL  +I++
Sbjct: 545 GLGEQRVEQLVES----GVIGELADLYTL------SVADLSKLDGWGTTSAENLIQAISE 594

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  SL  F+  LGI  VG  IAR+LA  + ++           A  + D  +L  +  +
Sbjct: 595 TQTPSLTDFLVGLGIPEVGPTIARNLAGTFDNFD----------AIIDADEAALREIEDI 644

Query: 605 GDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G  ++  I EF+ N +N  A++  L   V+P   +     ++ + +   VFTG+L  + R
Sbjct: 645 GPTVSTHISEFFTNEQNRAAIDNLLSAGVTPQTQQSTATTNAPLSDLTFVFTGSLS-VPR 703

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYN 722
             A  Y+ + G   +  +S  TD +++GDNPGS K   A++  V  ++E +F  LL +++
Sbjct: 704 TTATTYIERHGGNATGSVSSNTDYLVIGDNPGSTKRIDAERNDVPEIDETEFTELLAEHD 763

Query: 723 TTL 725
            TL
Sbjct: 764 DTL 766


>gi|330897709|gb|EGH29128.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 657

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  ++  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAQLDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q           GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIIDLE------GFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +         
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY--------- 567

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +        E   S+ +E  
Sbjct: 568 -LPDVGLEVAYEIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622


>gi|224437677|ref|ZP_03658624.1| NAD-dependent DNA ligase LigA [Helicobacter cinaedi CCUG 18818]
 gi|313144124|ref|ZP_07806317.1| DNA ligase [Helicobacter cinaedi CCUG 18818]
 gi|313129155|gb|EFR46772.1| DNA ligase [Helicobacter cinaedi CCUG 18818]
          Length = 651

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/704 (33%), Positives = 365/704 (51%), Gaps = 57/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E SS  Q+++     YY    PI  DS+YD L  +        P L     PN P  +
Sbjct: 3   QQEYSSNIQKLTKMAYHYYVLDDPIATDSQYDELYHQVLNFERQNPILI---SPNSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG    S  K +H     SLE ++N  +++++  RIY+ +         FT  PK DG 
Sbjct: 60  VGGTPLESFSKNSHIERMWSLEDVFNQAEMQEWCERIYKSYPHS-----HFTCSPKFDGA 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y  G  V A  RGDG  GE V++  R I +IP  LS++    IE+RGEV I+K+D
Sbjct: 115 SLNLLYRDGILVSATTRGDGIVGELVTSNARTIQSIP--LSIDYKGEIEIRGEVVIAKDD 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E +      +ANPRNAA+G LR+L+      R L F   G+G     F    YE
Sbjct: 173 FEKINNERLEQNLSLFANPRNAAAGSLRQLDSKITAQRKLRFMPWGIGAGLSQF-GSFYE 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQK+   GF     +        I+  Y  + S R   P  +DG+V  +DE  +Q++LG
Sbjct: 232 ALQKITDFGFAPVPFLTHCEGSDDIMQMYKILISKRDDYPIMLDGMVIMLDEIEIQQRLG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PR+  + KF   + S+++LDI +Q+GRTGI+TPVA LEPV I GA+I  ATLHN 
Sbjct: 292 WTIKAPRFACAFKFPAVEKSSKILDITLQVGRTGIITPVAELEPVEIEGAMIARATLHNF 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+ D V++ R+G+VIPK++  I   R     P + P+ CP+
Sbjct: 352 SEIER-----------KDIRINDEVIIIRSGDVIPKIIKPITALRDGTQIPITKPTHCPV 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+  ++ +            +C   L+C A+ +E + HF S+ A NI+GLG++ +   F+
Sbjct: 401 CRQELLIEE--------IFIKCQN-LSCEARVIESIIHFASKKALNIDGLGEKIVIQLFE 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      I+   DI+ L+  Q  +        G+ +    NL  +I     + L RFI +
Sbjct: 452 N----GLIQSILDIYALEESQLLALE------GWKEKRAKNLIVAIQNTIGVELWRFINA 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   ++ LA+ +                 + D+  ++ +   G+ +A ++VEF 
Sbjct: 502 LGIEHIGEGASKRLAQSFG------------RDTFSADFQQILGLDGFGEEMAYSLVEF- 548

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            N  N   +  LL+ +SP I + + +       K +V TGTL K  R +  E +   GA 
Sbjct: 549 -NHANKELIAKLLEIISPKIEQIKLDSGHIFYGKSIVLTGTLNKP-RDEIVEMLESKGAK 606

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +S+ +S+KTD +I G+  GSKLEKAQ LGVK ++EE+F+  +Q+
Sbjct: 607 ISSSVSKKTDFVIYGEKAGSKLEKAQNLGVKTLSEEEFMACMQE 650


>gi|313665597|ref|YP_004047468.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50]
 gi|312949194|gb|ADR23790.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50]
          Length = 668

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/710 (32%), Positives = 388/710 (54%), Gaps = 48/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S EQ    ++ L+++++     YY    P + D+EYD   +   ++ + +P+   S   
Sbjct: 1   MSKEQVLLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG +N    K+TH  P LSL  ++N ++  +F T++ +     ++    +  E
Sbjct: 58  DSPSQKVGGTVNEKFLKITHKTPMLSLGNVFNFDEFLEFNTQVSKVSNNLNN---EYVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+  ++ I +IP  L ++  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGVLVSAATRGNGIVGEDVTINVKTIKSIP--LKISKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+SK +F  +N + +      +ANPRNAA+G LR+L+   +  R L+ F++         
Sbjct: 173 YLSKAEFEKINKKRLLNSEDLFANPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSAK 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QYE + ++  LGF  N           I +Y  +  ++++ L Y IDG+V+K+++ +
Sbjct: 233 LN-QYESILRLNQLGFKTNKETMLCKNLDQIKAYIQKYTNLKNDLDYQIDGIVFKINDKN 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  ++ P+W I++KF  +   T+LLD+   +GRTG +T  A+LEPV + GA I+ 
Sbjct: 292 LQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDVFATVGRTGKITYNAKLEPVFLMGAKISA 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E     + F  
Sbjct: 352 ATLNNAEYIKT-----------KDLRINSIVKIKKAGDVIPEVIEAIKDEDFYKLEKFKP 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
             +CP C S + ++             C    +CS + L  L+HF SR+A NI  LG + 
Sbjct: 401 ALYCPNCYSLLEKNDGE------VDQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDRS 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+  F  +     I+  +DI+ L+  +     +I  I  FG  S  NL DSIN  +N SL
Sbjct: 454 LEILFNLKI----IQNISDIYKLEEYK----DQILAIDNFGLKSYLNLIDSINASKNNSL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRH+G++ A+ LAK Y +  N            +  +  LI++  +G+ +A 
Sbjct: 506 EKVLFGLGIRHIGSKTAKILAKKYQNIDNLM----------SASYDELIQINSIGESLAL 555

Query: 611 AIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +IV++++   N+  +       ++ +    + N +S I NK  V TGTL +  R + +  
Sbjct: 556 SIVDWFKIEDNLKLINDLKSFNINFNYLGAKINSNSIIANKSFVITGTLTRP-REEFKTL 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +      +S  +S++TD ++VG+N GSKLEKA++LGVKI++E+ F  LL+
Sbjct: 615 IENNAGKISGSISKQTDYLLVGNNVGSKLEKAKKLGVKIIDEQHFFDLLK 664


>gi|114705256|ref|ZP_01438164.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506]
 gi|114540041|gb|EAU43161.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506]
          Length = 821

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/648 (38%), Positives = 375/648 (57%), Gaps = 39/648 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P+E L   +A  EL  L +EI+ HD  YY    P + D++YDAL+RR  AI   FP L 
Sbjct: 4   TPVENLDETEAASELERLAREIAEHDRAYYGDDAPTLSDADYDALRRRNTAIEARFPALI 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P  ++G   + +  KV H++P LSL+  +  ED+  F  R+ R  + +D + +
Sbjct: 64  RA---DSPSKRVGAAPSTTFAKVRHAVPMLSLDNAFTEEDVADFAKRVRRIAKLQDTDGL 120

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T EPKIDG  +++RY  G+   AA RGDG  GEDV+   R +  IP  +    P++ E
Sbjct: 121 GITAEPKIDGLSLSLRYVNGELETAATRGDGTVGEDVTPNARTVDDIPVRI-DRAPKVFE 179

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           VRGEVY++  DF ALN+   A G+  +ANPRNAA+G LR+ +     +R L FF +  G+
Sbjct: 180 VRGEVYMAHADFAALNERQEAAGKPRFANPRNAAAGSLRQKDAEVTRSRPLRFFAYAWGE 239

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE+  + Q E++  +   GFPVN  +++  T   ++ +Y  ++  R++L YDIDG+VYK
Sbjct: 240 ASEVPGETQSEVVAAIGKFGFPVNELMQRFETIDALIEHYRRIEENRASLGYDIDGVVYK 299

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+  LQK LG  +R PRW I+HKFA ++A+T L  ID+  GRTG L P+ARLEPV +GG
Sbjct: 300 VDDLRLQKDLGFVSRFPRWAIAHKFAAEKATTVLKGIDVTTGRTGALNPIARLEPVTVGG 359

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
            +++NATLHNEDYI G+DA G+ +R  G DIR+GD V+++RAG+VIP+++D++  +R   
Sbjct: 360 VVVSNATLHNEDYIAGIDADGETIRPSGLDIRIGDTVVIQRAGDVIPQIIDVVAEKRPAG 419

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+PF FP+ C +C S  VR++NP+TG+  +   CT GL C AQ  E LKH VSR AF+IE
Sbjct: 420 AKPFVFPTHCAVCGSNAVREMNPRTGRPDSKRHCTAGLTCPAQGREGLKHLVSRSAFDIE 479

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT---------------------- 522
           GLG+  ++  F        +R PADIFTL   +  +                        
Sbjct: 480 GLGETLVEALFDE----GLVRQPADIFTLDFEKMKALLEERALAARREREAAEDEAARAE 535

Query: 523 ------KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                 + ++       S  N++D I+ RR + LERFIF LGI +VG   A++LA+++  
Sbjct: 536 GREPKVRGDDRAYDYTKSTQNIFDGIDARRTLPLERFIFGLGIPNVGETTAKALARHFSD 595

Query: 577 YQNFAQEINNIIAHNNDD-WLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
                  ++          W+ L  +  +G+   + I++  Q+  N  
Sbjct: 596 VAALIGGVDAAEKGKPGSAWIELSALKGIGEKSFEQILDLDQSKLNEE 643



 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 104/248 (41%), Gaps = 6/248 (2%)

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
              I  +G+       +      ++    D    + +  ++  ++  + G G+ S   + 
Sbjct: 575 GLGIPNVGETTAKALARHFSDVAALIGGVDAAE-KGKPGSAWIELSALKGIGEKSFEQIL 633

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA-HNNDDWLSL 598
           D +++ +               +     +SL + Y         I           +L+L
Sbjct: 634 D-LDQSKLNEETYDPTRDPAAGLNVTRRKSLKERYGDASRIRAAILEAKQTAPTQAYLNL 692

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFT 655
                +G +  Q+++ F+    N  AV+ALLK    +       V    S +    +VFT
Sbjct: 693 TTDSDIGTVATQSLINFFAEDHNRQAVDALLKAGVSTTNERMTAVASNDSPVSGLTIVFT 752

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G+L+K+ R  A+E    LGA VS  +S KTD+++ G   GSKL KA +LG+++++E+ + 
Sbjct: 753 GSLEKMTREAAKEMAEGLGAKVSGSVSNKTDLVVAGPGAGSKLSKASELGIEVIDEDAWF 812

Query: 716 FLLQQYNT 723
             + +   
Sbjct: 813 KRIGRDPA 820


>gi|28211984|ref|NP_782928.1| NAD-dependent DNA ligase LigA [Clostridium tetani E88]
 gi|75541732|sp|Q891I0|DNLJ_CLOTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28204427|gb|AAO36865.1| NAD-dependent DNA ligase [Clostridium tetani E88]
          Length = 668

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 198/714 (27%), Positives = 351/714 (49%), Gaps = 59/714 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+ ++ +  L +E++ +   YY    P + D EYD        +      +        P
Sbjct: 5   EEKKRRIHELIEELNKYAYEYYVLDNPTVSDKEYDKRYDELVNLEKETGFVLSY----SP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR------FWQKKDDNSIFF 128
             ++G  +     K TH     SL+K  NIE L+++I R  +         ++      +
Sbjct: 61  TQRVGDTVLTQFDKYTHKSRLWSLDKAQNIEQLKEWINRNEKIIMEYNRLNEETLPMPTY 120

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            L  K DG  +   Y E G  V  A RG G  GED+++ ++ I  +P  ++ N   +IEV
Sbjct: 121 ILTKKFDGLTVNCTYDESGILVKGATRGTGIIGEDITSQVKTIKCLPLRIANN--NLIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGE  ++K  F   N++       P  N RN A+G LR L+  +   R L+ F + +G +
Sbjct: 179 RGEAIMTKEAFDKYNEKA----EIPLKNLRNGAAGALRNLDVRETAKRNLSAFFYDIGYS 234

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EM+  +  +GFPV+  +++      I      ++ IR+ L YDIDG+V  +
Sbjct: 235 EGNEFKTYMEMIGFLISMGFPVDPYIKECKDIVEIKDEIKYIEDIRNELNYDIDGIVIAI 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +    ++ LG   + PRW I++KF  ++A+T+L+D++  +GR+G +TP A LE V +GGA
Sbjct: 295 NHIKTREVLGYTVKFPRWAIAYKFEAEEATTKLIDVEWNVGRSGRVTPTALLESVELGGA 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I  ATL+N D I             + +R+G  V ++R+ +VIP+++ ++      + +
Sbjct: 355 TIKRATLNNMDDI-----------IRKKVRLGAEVFIRRSNDVIPEIMGVV-ESSLENTE 402

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP C+S+++ +             C   L+C  Q ++ L HF SR+A NIEG 
Sbjct: 403 EIKAPLKCPYCESKLINE--------GVHLFCENTLSCKPQLVKSLVHFASREAMNIEGF 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++  + F++      +I+   D++ +++    +  K      F +    N+ ++I   +
Sbjct: 455 SEKTAEQFYEE----LNIKSIGDLYRVKKEDLLTLDK------FKEKKADNIMNAIENSK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L  FI++L I +VG + AR L K + +  N            N     L  V  +G+
Sbjct: 505 KPKLSSFIYALSIPNVGVKTARDLVKSFKTLDNIK----------NATIEELTSVKDIGE 554

Query: 607 IIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+A +++EF++      +++  L   V+P +   E    ++   K +V TGTL+   R++
Sbjct: 555 IVANSVIEFFKQENINESIKELLELGVTPIMDITEIKKDNKFNGKTIVVTGTLEGYTRNE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +E +  LGA VS  +S+KTD ++ G+  GSK  KA +LG++I+ EE+F  ++ 
Sbjct: 615 IKEKLEALGAKVSGSVSKKTDFVLAGEEAGSKYNKAMELGIRIITEEEFNEMIN 668


>gi|255526475|ref|ZP_05393386.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
 gi|296184848|ref|ZP_06853259.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
 gi|255509857|gb|EET86186.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
 gi|296050630|gb|EFG90053.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
          Length = 669

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/716 (28%), Positives = 355/716 (49%), Gaps = 58/716 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I+  ++++  L +E++ +   YY    P + D EYD        +            P 
Sbjct: 3   TIDTKKEQIEKLVEELNKYAQEYYLLDNPSVSDKEYDLRYDELLKLEKE----TGIILPY 58

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSI 126
            P  ++G  +     K TH     SL+K   ++ +  +  R  +     +         +
Sbjct: 59  SPTQRVGDNILKEFQKYTHKGKLWSLDKSQTVQGIIDWHVRNKKAVDDYNSTHEEKLPQL 118

Query: 127 FFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
            + +  K DG  I   Y E G  + AA RG G  GED++A  R I ++P  L +N   +I
Sbjct: 119 EYVITKKFDGLTINCTYDENGILIKAATRGTGEVGEDITAQARTIMSLP--LKINNSNVI 176

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLG 244
           EV GE  +++  F   N         P  N RN A+G LR LN  +  R  L+ F + +G
Sbjct: 177 EVHGEAIMTREAFEEYNKSAA----VPLKNLRNGAAGALRNLNIKETARRKLSAFFYDVG 232

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  K  +EM+  ++ +GFP++N ++  ++   I +    ++ IRS L YDIDG+V 
Sbjct: 233 YNEGAPFKTYFEMMNFIKNMGFPLDNYIKICSSIEEIENELKYVEEIRSELNYDIDGVVI 292

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
            +++   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G +TP A LEPV + 
Sbjct: 293 AINDMKTREILGYTIKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVTPTAILEPVELA 352

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  ATL+N D IK            +++R+G  V V+R+ +VIP+++ ++ +     
Sbjct: 353 GVTVKRATLNNMDDIKR-----------KEVRIGCSVFVRRSNDVIPEIMGVVQDTLEG- 400

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           +     P  CP C S +V+D           + C   L+C  Q ++ + HF SR+A NIE
Sbjct: 401 SIEIQAPEKCPYCDSELVQD--------GVHYFCDNTLSCKPQMVKSIVHFGSREAMNIE 452

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G  ++  +  F+       I+   D++ +++       K      F +    NL ++I K
Sbjct: 453 GFSEKTAEQLFEK----LEIKSIPDLYRIKKEDLMQLDK------FAEKKAQNLVNAIEK 502

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +N SL  FI++LGI ++G + A  L K + S  N  Q     +          + +  V
Sbjct: 503 SKNCSLASFIYALGIPNIGKKTATDLVKNFKSLDNIIQSSEEEL----------VSIQDV 552

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+I+A++I+EF+   + I ++  LL+     I   E+   S   +K +V TG+L+   R 
Sbjct: 553 GEIVAKSIIEFFNEDKIINSINELLELGVKPIFEEEEVSKSLFSDKTVVVTGSLENYTRT 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +E +  +GA VS  +S+KTD ++ G   GSK +KA +LGVKI+NEE+F  +L +
Sbjct: 613 TIKEKLQSVGAKVSGSVSKKTDYVLAGKEAGSKYDKALELGVKIINEEEFEKMLSK 668


>gi|32476578|ref|NP_869572.1| DNA ligase [Rhodopirellula baltica SH 1]
 gi|81659473|sp|Q7UKD1|DNLJ_RHOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|32447124|emb|CAD76950.1| DNA ligase [Rhodopirellula baltica SH 1]
          Length = 706

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/727 (30%), Positives = 369/727 (50%), Gaps = 64/727 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +     +  L  EI+ H+  YY  + P I D +YD L      + +  PDL R   P+ P
Sbjct: 10  DSIASRVQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENDHPDLRR---PDSP 66

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG++   L +V H +P LS++  ++ E+L   + RI +     +  S+ +T+E KI
Sbjct: 67  TQLVGGDVVDQLVQVPHRVPMLSIDNTYSREELAAAMERIEKSL---EGESVAWTMEYKI 123

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----------SLNIPE 183
           DG   +IRYE G+   A  RG+G  G+D++  +R I  +PR +             N+PE
Sbjct: 124 DGVAGSIRYENGELTLALTRGNGQVGDDITHNVRTIRELPRSIADAALAHPEVAGGNVPE 183

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
           ++EVRGE+Y++  D   LN      G +P+ N RN  +G +R L+P     R + FF HG
Sbjct: 184 VLEVRGELYMTDADLADLNVRQTDAGHEPFKNTRNVTAGTIRLLDPKIAASRNIRFFCHG 243

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+   + A      LQ ++ LG P+   V +       +    +++     LP++IDG+
Sbjct: 244 SGELVGVRASDHMTFLQHVQALGIPIAPDVVRFENKEDALQAIAKLELEMPDLPFEIDGI 303

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KVD F  +++LG R++SPRW+I++KF   +A T L  ID+Q+G+TG +TPVA L PV+
Sbjct: 304 VFKVDSFEQREKLGVRSKSPRWVIAYKFERYEAITTLEAIDVQVGKTGTITPVAYLTPVD 363

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I    ++ A+LHN D I+ L           D+RVGD V+V++AG++IPKVV +  + R 
Sbjct: 364 IADTTVSRASLHNADEIERL-----------DVRVGDTVVVEKAGKIIPKVVRVEKHART 412

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                F FP+ CP C   + RD      +     RCT   AC AQ  +RL +F SR   +
Sbjct: 413 KPLPKFEFPTHCPQCDEVLTRD------EGGVYIRCTNP-ACPAQLRQRLVYFGSRTGMD 465

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG---------FGDV 533
           I+GLG++ +D   + E     +   AD++ L   +    T      G         FG  
Sbjct: 466 IDGLGEEVVDLLLQKE----LVENYADLYRLNVDELAELTWPRLRKGKGDEMIEVQFGRK 521

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +  +L   IN+ R   L R + S+ IRH+G  +A+ +   + +           +A    
Sbjct: 522 NAESLVAGINESRTRGLARVLSSISIRHIGPRVAKLITAKFWNLDLLRSAKAEDLAA--- 578

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA-----LLKEVSPSIGRHEKNVSSEIE 648
                  +  +GD IA+++V+F  +      +       +    +  +   ++  +  + 
Sbjct: 579 -------IHEIGDRIAESLVKFIHSESGSQTLSDLDAVGVTMSETEPVATPDEEANLPLA 631

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTLQ   R + +  + +LG   ++ +S+KTD +I G+  GSKL KA+ LGV++
Sbjct: 632 GKNIVATGTLQHYTRDEIKARIEELGGRAASSVSKKTDFLIAGEKAGSKLTKAESLGVEV 691

Query: 709 MNEEQFL 715
           ++E+ F 
Sbjct: 692 LSEDDFR 698


>gi|329924834|ref|ZP_08279795.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5]
 gi|328940396|gb|EGG36721.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5]
          Length = 670

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/715 (29%), Positives = 347/715 (48%), Gaps = 60/715 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E++ ++  YY   +P++ D EYDAL  +  A+            P+ P  +
Sbjct: 4   KEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAE----TGVTLPDSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-------QKKDDNSIFFTL 130
           +GGE+        H  P  SL+K  NIE LR +  R+ R               S  + L
Sbjct: 60  VGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPSPCYAL 119

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K DG  + + Y+ GK V A+ RG+G  GE + A ++ I ++P  +       IEV+GE
Sbjct: 120 ELKFDGLTLNLTYQDGKLVQASTRGNGTVGEGILAQVKTIKSVPMTIPYTE-GTIEVQGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
             ++ +     N         P  N RNAA+G LR LNP     R LN + + +G +  I
Sbjct: 179 GIMNLSVLEQYNQTAAE----PLKNARNAAAGALRNLNPKVTAERKLNAYFYNVGYSDGI 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 EM+  +R     VN  +     F  ++    +++  RS L Y IDG V KV +F
Sbjct: 235 TFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVKVTDF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            +++ LG   + PRW +++KF  ++ +T L  +   +GRTG +TP+AR+EPV + G  + 
Sbjct: 295 RIREALGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAGVTVQ 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           N TL+N   I+         R      +G RV ++R+ +VIP+++  +  E   D +   
Sbjct: 355 NCTLNNIGDIE---------RKNLKFALGSRVFIRRSNDVIPEILGKVTEE--QDGEEIL 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           +P  CP C   + +          A   C     C  Q + R+ HF SRDA +IE    +
Sbjct: 404 YPEQCPSCGFPLEQR--------GAHLFCNNKTGCKPQIVARITHFASRDAMDIETFSDK 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                +        +R PAD++TL      S   +  +  FG+    NL D+I K +   
Sbjct: 456 TAIQLYDE----LGVREPADLYTL------SFDSLLKLERFGEKKAQNLLDAIEKSKERD 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L  F+F+LGI + G    + LA +Y       +++N ++A   ++ +    +P VG I+A
Sbjct: 506 LASFLFALGIPNTGKSTTKMLADHY-------RDLNRVMAATAEELVE---LPDVGGIVA 555

Query: 610 QAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I  ++ +P    +++ +     +          +  S    K +V TGTL  + R +A
Sbjct: 556 ESIAGYFADPFAQASIQKMLSLGVQAKAPEAPKPVSTDSYFSGKTVVLTGTLHLLTREEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720
            E +  LGA V+  +S+KTD++I G+  GSKL KAQQLG+ I+ +EE+F+ LL +
Sbjct: 616 TERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670


>gi|152990877|ref|YP_001356599.1| NAD-dependent DNA ligase LigA [Nitratiruptor sp. SB155-2]
 gi|166216219|sp|A6Q433|DNLJ_NITSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151422738|dbj|BAF70242.1| DNA ligase, NAD-dependent [Nitratiruptor sp. SB155-2]
          Length = 660

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/707 (31%), Positives = 351/707 (49%), Gaps = 56/707 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E     +++      YY    P + D  YD L R  +    A PD     DP  P  +I
Sbjct: 6   QEYKEAVEKLKRWAYAYYVLDNPEVPDEVYDKLYREVEEYEKAHPDQI---DPTSPTQRI 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E      K+ H     S+E ++N  ++ +++ R+Y+   +KD   + F +EPK DG  
Sbjct: 63  GAEPAKEFKKIKHLSKMWSMEDVFNQREMHEWLERVYKNAGRKD---LQFYIEPKFDGAS 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G    AA RGDG  GEDV+A  + IP+IP  L ++   +IE+RGEV I K+DF
Sbjct: 120 LNLIYENGLLKSAATRGDGEVGEDVTANAKTIPSIP--LGIDYKGLIEIRGEVVIRKDDF 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             LN E    G   +ANPRNAA+G LR+L+P     R L F+   +G  + +  K Q+E 
Sbjct: 178 EKLNHERALKGESTFANPRNAAAGSLRQLDPKVTAQRKLYFYPWDIGYNT-LNFKYQHEK 236

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +  +   GF              I   Y E    R  LP  +DG+V KVDE +L + LG 
Sbjct: 237 MDFVYQQGFIKPFKRAICENEEEIQQLYEEFSKERDKLPVMLDGMVVKVDEIALHEILGY 296

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRWM+++KF   +  TR++DI  Q+GRTG++TPVA LEPV I G ++  ATLHN  
Sbjct: 297 TVKYPRWMVAYKFPAVEKMTRIIDIVPQVGRTGVITPVAILEPVEIEGVVVERATLHNYA 356

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V+V R+G+VIP+V  ++   R    +    P  CP+C
Sbjct: 357 EIER-----------KDIRIGDMVIVIRSGDVIPEVTKVLTQYRTGKEKKVERPKVCPVC 405

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
              V+              +C   L+C A+ +  + +F S+   +I GLG+  +   ++ 
Sbjct: 406 GQPVL--------DEGILIKCQN-LSCPARVVNSIIYFASKQCLDISGLGEATVKLLYEK 456

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++   D+F L++             GF +    NL D+    + +   RF+ +L
Sbjct: 457 ----GLVKDVVDLFKLKKEDLLRL------PGFAEKKAQNLIDATQSVKGVECWRFVNAL 506

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI H+G   ++ L + +             +         L  +   G  + ++I EF  
Sbjct: 507 GIEHIGEVASKKLCEKFG------------LDWYKAPKEKLYEIEGFGPEMVRSIEEF-- 552

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              N   +E L++ + P+  + E+ V +S + +K +V TG + K+ R K +E + + GA 
Sbjct: 553 VEVNKEKIEKLIELLQPTEPKKEEEVENSPLAHKTVVLTGEM-KLPRSKIKELLERAGAH 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S  TD +  G+NPGSK +KAQQLGV ++ EE+   LL++   
Sbjct: 612 VTNSVSHHTDYVFYGENPGSKFQKAQQLGVPLLPEEKMWELLKEAGI 658


>gi|320323491|gb|EFW79576.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 787

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/656 (33%), Positives = 337/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV++ ++ AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q           GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIIDLE------GFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI +LGI  VG E A+ LA+   S     Q +  ++ +         
Sbjct: 517 KAIADSRQPTLARFIHALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY--------- 567

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +        E   S+ +E  
Sbjct: 568 -LPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 113/278 (40%), Gaps = 39/278 (14%)

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           L R  H     A  I  +G++      +S      ++  A    L             I 
Sbjct: 527 LARFIH-----ALGIPDVGEETAKVLARSLASLDRVKQ-ALPEVLTYLPDVGLEVAYEIH 580

Query: 529 GFGD-VSVTNLYDSI----------------NKRRNISLERFIFSLGIRHVGAEIARSLA 571
            F +     N+ D++                    + +LE  I  L I  VG   A+ LA
Sbjct: 581 SFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLA 640

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEAL 628
             + + +          A  + DWL + +   + +  A+++ +F+ +  +     A+EA 
Sbjct: 641 DRFGTLE----------AIISADWLDMRQT--LPEKQAKSVRDFFDDSAHAERARAIEAQ 688

Query: 629 LKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           LK+        +K V    +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  
Sbjct: 689 LKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHT 748

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           ++ G   GSKL KA +LG+ +++E+  L  L +    +
Sbjct: 749 VVAGPGAGSKLTKANELGLTVLDEDALLKRLTELGVAV 786


>gi|332671254|ref|YP_004454262.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484]
 gi|332340292|gb|AEE46875.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484]
          Length = 834

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/792 (27%), Positives = 354/792 (44%), Gaps = 112/792 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             QAR   S L + I      YY    P   D++YDA  R    +   +P L     P  
Sbjct: 27  PAQARHRWSELVERIDADQFAYYVLDAPPSSDADYDARLRELAELEERYPGLV---TPQS 83

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG  +       H    LSL+  ++ ED+  +  R  R       +   +  E K
Sbjct: 84  PTQRVGGTFSTDFATAAHVQRMLSLDNAFSDEDVAAWADRALRDLGAAAPH---YLCELK 140

Query: 134 IDGTMITIRY------EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEI 184
           IDG  I + Y      E  + V AA RGDG +GEDV+  +R I ++P VL  +    P++
Sbjct: 141 IDGLAIALLYQRPRPGEPARLVRAATRGDGRTGEDVTLNVRTIASVPDVLGGDPATHPDV 200

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           IE+RGEV++    F  LN+  +A G+ P+ANPRNAA+G LR+ +P    +R L  + HG+
Sbjct: 201 IEIRGEVFLPVEAFARLNEAQVAAGKAPFANPRNAAAGSLRQKDPRVTASRPLGMYAHGI 260

Query: 244 GKTS-----EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           G            + Q ++   +   G P ++  R  +   G+          R  + ++
Sbjct: 261 GAFERGSAGGPGIERQSQVYDLLASWGVPTSSHTRVVDGLDGVREMIAYYGEHRHDVEHE 320

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KVDE  LQ++LG  +R+PRW I++K+  ++  TRLL I++ IGRTG  TP A +
Sbjct: 321 IDGVVVKVDEIDLQRRLGATSRAPRWAIAYKYPPEEVVTRLLAIELGIGRTGRATPFAVM 380

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ +  ATLHN+D ++            + +RVGD V++++AG+VIP++V    
Sbjct: 381 EPVFVSGSTVRQATLHNQDVVRA-----------KGVRVGDMVVLRKAGDVIPEIVGPAP 429

Query: 419 NERHPDAQ--PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
                  +   +  P+ CP C + +         +     RC    +C AQ   R++H  
Sbjct: 430 QAPDDTVERVEWHMPADCPECGTPL-----RPMREGDVDLRCPNAESCPAQVRGRVEHIG 484

Query: 477 SRDAFNIEGLGKQQLDFF----------FKSEDPAF--------------------SIRI 506
           SR AF+IE LG+                 ++E   F                    S+R 
Sbjct: 485 SRGAFDIEALGEVTAAALTQPDVPSTPPLRTEADLFALVGYGPDAPQDERARVRDASLRT 544

Query: 507 PADIFTLQRRQQTSTTKIEN-------------------------------ILGFGDVSV 535
              I  + R  +T   + +                                       + 
Sbjct: 545 LGAIEVVVRDPETGLPREDEDGNVRRRAPFRRQLTWSKAERARAEADGRELPDWEPSTAA 604

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
             L D ++  +   L R + +L IR+VG   AR+LA+ + S     + +           
Sbjct: 605 RTLLDQLDLAKEKELWRVLVALSIRNVGPTAARALAQEFRSMAALREVVE---GDPVAAA 661

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------- 648
             L  V  VG  IAQ++V+++  P +   V+A             + V+  +E       
Sbjct: 662 ERLSGVDGVGPTIAQSLVDWFATPWHAAVVDAWAAAGVRMADTAGEQVARTLEVADEGGT 721

Query: 649 --NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
                +V TG L++  R +A+E +   G   +  +S+KTD ++VG+N GSK  KA++LG+
Sbjct: 722 VRGLTVVVTGGLERFSRDEAKEAILSRGGKAAGSVSKKTDFVVVGENAGSKETKARELGL 781

Query: 707 KIMNEEQFLFLL 718
           +I++E  F  LL
Sbjct: 782 RILDEAGFEALL 793


>gi|261409569|ref|YP_003245810.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. Y412MC10]
 gi|261286032|gb|ACX68003.1| DNA ligase, NAD-dependent [Paenibacillus sp. Y412MC10]
          Length = 670

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/715 (29%), Positives = 347/715 (48%), Gaps = 60/715 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E++ ++  YY   +P++ D EYDAL  +  A+            P+ P  +
Sbjct: 4   KEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAE----TGVTLPDSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-------QKKDDNSIFFTL 130
           +GGE+        H  P  SL+K  NIE LR +  R+ R               S  + L
Sbjct: 60  VGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPSPCYAL 119

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K DG  + + Y+ GK V A+ RG+G  GE + A ++ I ++P  +       IEV+GE
Sbjct: 120 ELKFDGLTLNLTYQDGKLVQASTRGNGTVGEGILAQVKTIKSVPMTIPYAE-GTIEVQGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
             ++ +     N         P  N RNAA+G LR LNP     R LN + + +G +  I
Sbjct: 179 GIMNLSVLEQYNQTAAE----PLKNARNAAAGALRNLNPKVTAERKLNAYFYNVGYSDGI 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 EM+  +R     VN  +     F  ++    +++  RS L Y IDG V KV +F
Sbjct: 235 TFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVKVTDF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            +++ LG   + PRW +++KF  ++ +T L  +   +GRTG +TP+AR+EPV + G  + 
Sbjct: 295 RIREVLGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAGVTVQ 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           N TL+N   I+         R      +G RV ++R+ +VIP+++  +  E   D +   
Sbjct: 355 NCTLNNIGDIE---------RKNLKFALGSRVFIRRSNDVIPEILGKVTEE--QDGEEIL 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           +P  CP C   + +          A   C     C  Q + R+ HF SRDA +IE    +
Sbjct: 404 YPEQCPSCGFPLEQR--------GAHLFCNNKTGCKPQIVARITHFASRDAMDIETFSDK 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                +        +R PAD++TL      S   +  +  FG+    NL D+I K +   
Sbjct: 456 TAIQLYDE----LGVREPADLYTL------SFDSLLKLERFGEKKAQNLLDAIEKSKERD 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L  F+F+LGI + G    + LA +Y       +++N ++A   ++ +    +P VG I+A
Sbjct: 506 LASFLFALGIPNTGKSTTKMLADHY-------RDLNRVMAATAEELVE---LPDVGGIVA 555

Query: 610 QAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I  ++ +P    +++ +     +          +  S    K +V TGTL  + R +A
Sbjct: 556 ESIAGYFADPFAQASIQKMLSLGVQAKAPEAPKPVSTDSYFSGKTVVLTGTLHLLTREEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720
            E +  LGA V+  +S+KTD++I G+  GSKL KAQQLG+ I+ +EE+F+ LL +
Sbjct: 616 TERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670


>gi|58584805|ref|YP_198378.1| NAD-dependent DNA ligase, Lig [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75497767|sp|Q5GS88|DNLJ_WOLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|58419121|gb|AAW71136.1| NAD-dependent DNA ligase, Lig [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 683

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/721 (37%), Positives = 405/721 (56%), Gaps = 59/721 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            +E+  +E + L  +ISYHD  Y+Q SKP I D+EYD LK++   +    P    ++D  
Sbjct: 3   DLEKMIEEFTKLRDQISYHDVLYHQKSKPEIADAEYDKLKQKLVEMEGQLPGACVTQD-- 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
                +G   +    K+ H  P LSLE  ++ + + +F++RI RF     +  I    EP
Sbjct: 61  ----GVGAAPDEKFSKIKHREPMLSLENAYDEQGVERFLSRIKRFL---IEEEIEVFCEP 113

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG   +  YE G+FV AA RGDG  GEDV+  +  I   PR L  ++ + +EVRGE+Y
Sbjct: 114 KIDGLSFSAVYEDGRFVKAATRGDGFIGEDVTRNVATIKGFPRFLQ-DVQDRLEVRGEIY 172

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           I+ +DFL LN +        +ANPRNAA+G L++L+ +    R L +F + L    E   
Sbjct: 173 INNSDFLKLNKDNE------FANPRNAAAGSLKQLDVSITANRPLKYFAYSLIGGKE--- 223

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K Q E+L ++  LGF VN      N   G++ +YN++ + R +L YDIDG+VYKV++  L
Sbjct: 224 KSQSEVLNRLESLGFCVNEHRSLTNNLSGMLEFYNKVYNCRYSLDYDIDGIVYKVNDLIL 283

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG   ++PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A
Sbjct: 284 QSRLGSTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLIPVNIGGVLVSRA 343

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
            LHN+D IK            +D+R GD V +KRAG+VIP++V +    RH DA  F FP
Sbjct: 344 NLHNQDEIKR-----------KDVREGDIVTIKRAGDVIPQIVRVDKGSRHADAPGFVFP 392

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C  +V  +         AA RC+  L C AQ + +L HFVS+ AF+I GLG++Q+
Sbjct: 393 EICPECGGKVQAE--------GAAIRCSEELTCKAQIIGKLSHFVSKGAFDIFGLGEKQI 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            FF+        I+   DIF L+ R    + K      +G+ S+ NL ++I  RR I+L+
Sbjct: 445 KFFYD----LGLIKQIPDIFNLEERLNEFSLK--EQPDWGERSIANLLNAIQNRRVITLD 498

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL-------------SL 598
           RFIFSLGIR +G   A  LA YY+SY N+   +  +++++ +  +              L
Sbjct: 499 RFIFSLGIRFIGQVAAELLANYYVSYNNWYNSMIKLLSNDAEVGVGGVEKKIAKSFSDEL 558

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           + +  +G+ +A+++  F+    NI  ++ L   +         + S     K +VFTG L
Sbjct: 559 VGIDGIGEKVAESLKSFFSKEHNIKMLKDLTDYLQILSVNSNSSNSVLNN-KVIVFTGKL 617

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A+     LGA VS+ LS K D ++ G+ PG+K +KA +LGV I+NE+Q+  ++
Sbjct: 618 LTMSRGEAKVRAKALGAKVSSNLSAKIDYLVAGEKPGNKYKKAVELGVGILNEDQWYRMI 677

Query: 719 Q 719
            
Sbjct: 678 N 678


>gi|332299534|ref|YP_004441455.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176597|gb|AEE12287.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707]
          Length = 679

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/722 (29%), Positives = 355/722 (49%), Gaps = 58/722 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++      E+  L   I  H+  YY  + P I D++YDAL +R   +    P+LA   DP
Sbjct: 1   MTRNNTELEIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G + N +  +V H  P LSL   +N +++ +   R        D   + +  E
Sbjct: 58  TSPSLRVGRDRNDAFVQVAHERPMLSLSNTYNYDEIAEICERTDTLLATDD---VPWVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--LNIPE----II 185
            K DG+ I++ YE+G  V A  RGDG  G+DV+  +R I ++P  L      P+     I
Sbjct: 115 MKYDGSSISLIYEEGVLVRAVTRGDGTLGDDVTVNVRTIQSVPLRLRPVAGHPDYTMGRI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEV +   +F  LN E  A G  P+ANPRNAA+G L+ LN   +  R L    + L 
Sbjct: 175 EVRGEVLLPFKEFERLNGERTAEGEAPFANPRNAAAGTLKTLNSRVVAQRRLLCICYYLY 234

Query: 245 KTSEI--FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
              +        YE ++ +  +GF       +++    +  Y +E    R  LPY  DG+
Sbjct: 235 ALDDETRLPDSYYERMKLLEEMGFNTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD  + Q+ LG  A+SPRW  ++K+  + A   LL +D Q+GR+G++TPVA +EPV 
Sbjct: 295 VLKVDSLTQQRTLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGVVTPVANVEPVL 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I G ++  ATLHNE++IK L           D+   D V +++ GE+IPK+  +  + R 
Sbjct: 355 ISGTVVRRATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVETSLRR 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P+++P   P  CP C + +      +       + C    AC  Q + R++H+ +R A +
Sbjct: 404 PESEPVRLPELCPACGAPL------QQIDGSVGYYCVNSYACPPQIMGRIEHYCTRRAAD 457

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I  +G + +D  F        I    D++ L             +  F + S+ NL  SI
Sbjct: 458 I-NVGPETIDSLFDRH----LIENIDDLYKLTASDLA------QLPNFKEKSINNLLASI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + ++    R ++ +GIR+VG   A++LA+++ S    AQ  +            L  +P
Sbjct: 507 EQSKSRPFARLLYGIGIRYVGEGTAKTLARHFQSIDRLAQATD----------YELQALP 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTL 658
            VG  IA+ +V F+   RN   +  L +       R E+   +     +E +++V +G+ 
Sbjct: 557 DVGPKIAEQVVYFFSLERNQQLIAELQRCGVILEERSEETTDAPQSNLLEGERIVISGSF 616

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
            +  R + ++ + Q G V    +S +T  +++G + G SK  KA+QLG+ ++ EE+FL  
Sbjct: 617 TQHSRDEYKQLIEQHGGVNVGSISGRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLAR 676

Query: 718 LQ 719
           L 
Sbjct: 677 LN 678


>gi|168183572|ref|ZP_02618236.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf]
 gi|237796711|ref|YP_002864263.1| NAD-dependent DNA ligase LigA [Clostridium botulinum Ba4 str. 657]
 gi|254781290|sp|C3KUA1|DNLJ_CLOB6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|182673387|gb|EDT85348.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf]
 gi|229263356|gb|ACQ54389.1| DNA ligase, NAD-dependent [Clostridium botulinum Ba4 str. 657]
          Length = 664

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/714 (28%), Positives = 358/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +        +   P  
Sbjct: 1   MDNKLEKMKKLVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKE----TQVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  +  N   +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNN--HVIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +  R  L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYN----KAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  +R +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIREELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++  E   ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVV-EESLEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
              +  +  F+       I+  +D++ +++ +  +  K      FGD    NL D+I   
Sbjct: 451 FSGKTAEQLFER----LDIKSISDLYKIRKEELLTLDK------FGDKKSQNLIDAIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESIK----------NTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +    K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|240141492|ref|YP_002965972.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
 gi|240011469|gb|ACS42695.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
          Length = 814

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/630 (40%), Positives = 378/630 (60%), Gaps = 31/630 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +EALS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   FP L  +
Sbjct: 10  VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            + +     +G + +    KV H++P LSL   +  ED+ +F+ R+ RF     + ++ F
Sbjct: 70  TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEEAVAF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
           T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  L   NIPE++EV
Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGENIPEVLEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  G+ 
Sbjct: 187 RGEVYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDIDG+VYKV
Sbjct: 247 SEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRTIEAERAGLGYDIDGVVYKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG 
Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++++R  DA 
Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIDKRPADAV 426

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+ F++EG 
Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 486

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTKIEN---------- 526
           G+  ++  F+    A  ++ PAD+F L+          RR+  S  +             
Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEPAPKKPTK 542

Query: 527 -ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                 D ++ NL  S++ RR I L RF+F+LGI  +G   A++LAK +         + 
Sbjct: 543 KKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAALA 602

Query: 586 NI-IAHNNDDWLSLIRVPLVGDIIAQAIVE 614
                    DWL L  +P +G      + +
Sbjct: 603 AATREQAGQDWLELSALPRIGPGTRDRLFD 632



 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 5/169 (2%)

Query: 556 SLGIRHVGAEIA---RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQA 611
           SLG R  G        ++  +Y S       +    +    D   L      +G +   +
Sbjct: 646 SLGARLRGRLTPSQREAVLAHYGSEAEADAALERAASQRPGDAYRLFADDGEIGPVATDS 705

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +++F+  P N  AV ALL+EV  +        ++    K +VFTG+L+K+ R +A+    
Sbjct: 706 LIQFFSEPHNDAAVRALLEEVG-TEPLATTTSAAAFAGKTVVFTGSLEKMTRSEAKATAE 764

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +LGA VS  +S KTD+++ G   GSKL+ A++ GVK+++E+ +L +L +
Sbjct: 765 RLGAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813


>gi|317062114|ref|ZP_07926599.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
 gi|313687790|gb|EFS24625.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 665

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/707 (31%), Positives = 353/707 (49%), Gaps = 50/707 (7%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
             ++  ++  YY  ++ +I D EYD L      +   +P+    +    P   +G     
Sbjct: 2   RADLLKYNQYYYTNNESLISDVEYDMLMNELKELEEKYPEY---KSEASPTVIVGASNLR 58

Query: 85  S--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                KVTH  P LSL   +N E++  FI RI R   +++D  I + LE K+DG  I+I+
Sbjct: 59  ENKFQKVTHKKPMLSLSNTYNEEEIGDFIDRIKRLLPERED--IKYALELKLDGLSISIQ 116

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YEKGK V    RGDG  GEDV+  I  I TIP  L    P  +E+RGE+ +  + F +LN
Sbjct: 117 YEKGKLVRGVTRGDGAIGEDVTENIMEIETIPHTLKE--PLDMEIRGEIVLPISRFESLN 174

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           +  +  G + +ANPRNAASG LR+++ + I  R L+ + + +        +   E ++ +
Sbjct: 175 ERRMEAGEEVFANPRNAASGTLRQIDASIIKERGLDCYFYFIVDAKNYGIQTHSESIKYL 234

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LG          +T   +    +  +  +  L Y+ DG+V KVD   L  +LG   +S
Sbjct: 235 ESLGIKTTGVCEVLDTASALKKRIDYWEQEKEKLDYETDGMVIKVDNLDLWDELGNTTKS 294

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF  KQ +T LL I  Q+GRTG +TPVA LE V + G+ +  A+LHN   I+ 
Sbjct: 295 PRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVAELEEVALSGSKVKRASLHNFHEIER 354

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD+V +++A E+IP+VV  I   R    +  + P  CP+C S V
Sbjct: 355 -----------KDIRIGDKVFIEKAAEIIPQVVKSIKEFRDGSEKMITEPDKCPVCGSPV 403

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+            +CT  + C  +   R+++FVSRDA NI G G + ++   +     
Sbjct: 404 AREEGQ------VDIKCTNPV-CPGKVKGRIEYFVSRDAMNIGGFGSKMVEKMLELS--- 453

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I+   DI+ L+  +      +ENI   G  SV NL DSI   +     + I++LGI  
Sbjct: 454 -FIKNVGDIYDLKDHK----EDLENIEKMGKRSVENLLDSIEASKKRDYSKVIYALGIPF 508

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G    + LA+   +  N  +           +   LI +  +GD  A+A+ +F ++  N
Sbjct: 509 IGKYSGKLLAEASRNIDNLMKM----------EIEELIEIDGIGDKGAKAVYDFLRDEEN 558

Query: 622 ICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           I  +  L       +      E         K  +FTGTL+  +R + +E + +LG    
Sbjct: 559 IELINILKGHGLQFAMEEKEEEDQSEKIFSGKTFLFTGTLKNFKREEIKEEIEKLGGKNL 618

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYNTT 724
           + +S+  D +I+G+  GSKL+KAQ+LG VKI+ EE+F+ + +  N  
Sbjct: 619 SAVSKNLDYLIIGEKAGSKLKKAQELGTVKILTEEEFVEICKNNNKN 665


>gi|313886637|ref|ZP_07820349.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923933|gb|EFR34730.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I]
          Length = 679

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/722 (29%), Positives = 355/722 (49%), Gaps = 58/722 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++      E+  L   I  H+  YY  + P I D++YDAL +R   +    P+LA   DP
Sbjct: 1   MTRNNTELEIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G + N +  +V H  P LSL   +N +++ +   R        D   + +  E
Sbjct: 58  TSPSLRVGRDRNDAFVQVAHERPMLSLSNTYNYDEIAEICERTDTLLATDD---VPWVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--LNIPE----II 185
            K DG+ I++ YE+G  V A  RGDG  G+DV+  +R I ++P  L      P+     I
Sbjct: 115 MKYDGSSISLIYEEGVLVRAVTRGDGTLGDDVTVNVRTIQSVPLRLRPVAGHPDYTMGRI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEV +   +F  LN E  A G  P+ANPRNAA+G L+ LN   +  R L    + L 
Sbjct: 175 EVRGEVLLPFKEFERLNGERTAEGEAPFANPRNAAAGTLKTLNSRVVAQRRLLCICYYLY 234

Query: 245 KTSEI--FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
              +        YE ++ +  +GF       +++    +  Y +E    R  LPY  DG+
Sbjct: 235 ALDDEARLPDSYYERMKLLEEMGFNTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD  + Q+ LG  A+SPRW  ++K+  + A   LL +D Q+GR+G++TPVA +EPV 
Sbjct: 295 VLKVDSLTQQRTLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGVVTPVANVEPVL 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I G ++  ATLHNE++IK L           D+   D V +++ GE+IPK+  +  + R 
Sbjct: 355 ISGTVVRRATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVETSLRR 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P+++P   P  CP C + +      +       + C    AC  Q + R++H+ +R A +
Sbjct: 404 PESEPVRLPERCPACGAPL------QQIDGSVGYYCVNSYACPPQIMGRIEHYCTRRAAD 457

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I  +G + +D  F        I    D++ L             +  F + S+ NL  SI
Sbjct: 458 I-NVGPETIDALFDRH----LIENIDDLYKLTASDLA------QLPNFKEKSINNLLASI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + ++    R ++ +GIR+VG   A++LA+++ S    AQ  +            L  +P
Sbjct: 507 EQSKSRPFARLLYGIGIRYVGEGTAKTLARHFQSIDRLAQATD----------YELQALP 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTL 658
            VG  IA+ +V F+   RN   +  L +       + E+   +     +E +++V +G+ 
Sbjct: 557 DVGPKIAEQVVYFFSLERNQQLIAELQRCGVILEEQTEETTDAPQSNLLEGERIVISGSF 616

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
            +  R + ++ + Q G V    +S +T  +++G + G SK  KA+QLG+ ++ EE+FL  
Sbjct: 617 TQHSRDEYKQLIEQHGGVNVGSISGRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLAR 676

Query: 718 LQ 719
           L 
Sbjct: 677 LN 678


>gi|166215834|sp|Q18E49|DNLJ_HALWD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 736

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/723 (32%), Positives = 381/723 (52%), Gaps = 56/723 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             PIE LS E A ++ + L + I  HD  YY  + PII D  YD L  R  A+   F   
Sbjct: 63  FRPIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILFDRLQALEDIF--- 119

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              +    P  ++GGE    L  V H    LS+++   ++ +R F  R+           
Sbjct: 120 -NLDTEASPTRRVGGEPLDELETVEHVTSMLSIDQSTAVDSVRDFDERVRDV-----VGD 173

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  EPK DG  + + YE G+++ AA RGDG+ G+DV+A +  +  +P  L  + P  +
Sbjct: 174 LEYICEPKFDGLSVEVIYEDGEYIRAATRGDGNRGDDVTAQVETVGAVPLKLHGDYPSYL 233

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
            VRGEVY+ K  F   N E I    KP+ANPRNAA+G LR+L+P  +  R L+ F + + 
Sbjct: 234 AVRGEVYMPKAGFREYNRERIECDEKPFANPRNAAAGTLRQLDPGVVAERPLSCFFYDIL 293

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             +E+    Q+  L  ++  G   N+ + + ++    ++Y +++K+ R+ L Y+IDG V 
Sbjct: 294 DATELPPD-QWTTLNDLQSWGLRTNDRISRVDSIDDAIAYRDQLKAARAELNYEIDGTVI 352

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++   ++ LG  +RS RW  ++KF  +   T + DI +Q+GRTG LTPVA L+PV++G
Sbjct: 353 KVNDRGNREILGATSRSVRWAFAYKFPPRAEITHITDIVVQVGRTGRLTPVALLDPVDVG 412

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+LHN + IK L  +            GD V V+RAG+VIP+V ++   +R   
Sbjct: 413 GVTVSRASLHNPEEIKRLSVNS-----------GDEVRVRRAGDVIPEVAEV-TQKRA-- 458

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              F+FP+ CPIC S V +D             CTGGL C AQ +  + H+ SR A +I+
Sbjct: 459 TGTFNFPNQCPICHSSVEQD--------GPLAFCTGGLTCDAQLVRTIVHYGSRSALDID 510

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG+Q+++   +S      I   AD++TL      S   +  + G+G  S  NL  +I++
Sbjct: 511 GLGEQRVEQLVES----GVIGELADLYTL------SVADLSKLDGWGTTSAENLIQAISE 560

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  SL  F+  LGI  VG  IAR+LA  + ++           A  + D  +L  +  +
Sbjct: 561 TQTPSLTDFLVGLGIPEVGPTIARNLAGTFDNFD----------AIIDADEAALREIEDI 610

Query: 605 GDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G  ++  I EF+ N +N  A++  L   V+P   +     ++ + +   VFTG+L  + R
Sbjct: 611 GPTVSTHISEFFTNEQNRAAIDNLLSAGVTPQTQQSTATTNAPLSDLTFVFTGSLS-VPR 669

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYN 722
             A  Y+ + G   +  +S  TD +++GDNPGS K   A++  V  ++E +F  LL +++
Sbjct: 670 TTATTYIERHGGNATGSVSSNTDYLVIGDNPGSTKRIDAERNDVPEIDETEFTELLAEHD 729

Query: 723 TTL 725
            TL
Sbjct: 730 DTL 732


>gi|189184847|ref|YP_001938632.1| NAD-dependent DNA ligase LigA [Orientia tsutsugamushi str. Ikeda]
 gi|254781383|sp|B3CVK1|DNLJ_ORITI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189181618|dbj|BAG41398.1| DNA ligase [Orientia tsutsugamushi str. Ikeda]
          Length = 699

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/720 (35%), Positives = 415/720 (57%), Gaps = 32/720 (4%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
             I IE L+ + A+K +  L  E+  +D  YY  + P++ D++YD LK   + I   FP 
Sbjct: 7   STINIEQLTSDHAKKIVDFLALELQKYDQAYYSDNNPLVTDAQYDVLKNLNNKIVAKFPH 66

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           LA   D +    K+G   +    KV H  P LSL   + +ED+  FIT+I  F +   D+
Sbjct: 67  LALVNDHS---KKVGFTPSAQFSKVVHLKPMLSLANGFCVEDISNFITKIQNFLKI--DH 121

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                 E KIDG     RYE G    A+ RGDG  GE+++  ++ I + P+ L +   ++
Sbjct: 122 CPKIVCEYKIDGLSFNARYEYGVLTLASTRGDGQIGENITENLKTIQSFPQTLPITD-KV 180

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
            EVRGE+YI+ NDF  LN +   +G+  ++NPRNAA+G +R+L+P     R L +FV+ L
Sbjct: 181 FEVRGEIYITNNDFRVLNIQQQKLGKALFSNPRNAAAGSIRQLDPAITAQRPLKYFVYAL 240

Query: 244 GKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ +   FA  Q+E+LQK+  L F VN     ++  H ++ +YN + + R+ L ++IDG+
Sbjct: 241 GEVTNHHFASTQFELLQKLSQLKFSVNTDYILSDNLHSMIEFYNNVATERNNLAFEIDGV 300

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKV++F+LQ++LG  + SPR+ I++KF      T++ +I +Q+G+TG +TPVA L P+N
Sbjct: 301 VYKVNDFALQERLGATSTSPRFAIAYKFPALIGRTKITNITLQVGKTGAVTPVAWLIPIN 360

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I G  I+ ATLHN+  I+            +DIR+GD V + RAG+VIPK+  + ++ R 
Sbjct: 361 IAGVTISRATLHNKQEIES-----------KDIRIGDYVFLHRAGDVIPKINGVDLSARD 409

Query: 423 PDAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             +   F FP+ CP C   +V       G+ VA  RC   LAC AQ  ER+ HFVS+DA 
Sbjct: 410 TQSSERFIFPTTCPSCNQNLV----VNEGETVA--RCGNSLACQAQIYERICHFVSKDAL 463

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR-RQQTSTTKIENILGFGDVSVTNLYD 540
           NI+GLGKQ++ F   ++     I    DIF L+   +   + K+E+I G+G  SV  L+ 
Sbjct: 464 NIDGLGKQRIQFLLDNK----YIVNIVDIFLLEENNKFLYSNKLEDIAGWGIKSVNKLFQ 519

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +IN+ +N+ L++FI++L I+HVG   A+ LAK + + +NF  +   +  +  + +  L  
Sbjct: 520 NINQAKNVILDKFIYALAIKHVGKYSAKLLAKEFKTAKNFINQSLKLANNATEIYEKLRN 579

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  VG   A  + +F+    N+  +  L+  ++          +  + N+ +VFTGT   
Sbjct: 580 IEGVGVKTADQLKQFFMVSANVNLITKLVNILTIQ-DWQYHGDNLLLSNQTIVFTGTFAT 638

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R + +    +LGA V   +S  TD+++VG+  G+KL+KAQQLG+KI+NEE+++ ++ +
Sbjct: 639 VSRSEIKVQAEKLGAKVGTQVSNNTDLLVVGNKAGNKLQKAQQLGIKIINEEEWIKMVNE 698


>gi|226950696|ref|YP_002805787.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto]
 gi|254781293|sp|C1FLS8|DNLJ_CLOBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226842063|gb|ACO84729.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto]
          Length = 664

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/714 (28%), Positives = 356/714 (49%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  +  N   +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNN--HVIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +  R  L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYN----KAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++      ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+       I+  AD++ +++ +  +  K      F D    NL D+I   
Sbjct: 451 FSEKTAEQLFEK----LDIKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESIK----------NTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +    K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|289804564|ref|ZP_06535193.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 551

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/588 (36%), Positives = 336/588 (57%), Gaps = 43/588 (7%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            E K+DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVR
Sbjct: 1   CELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVR 60

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV++ +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G   
Sbjct: 61  GEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILE 120

Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                      L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 121 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 180

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 181 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 240

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 241 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 289

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 290 PIVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 343

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +
Sbjct: 344 GDKIIDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAK 393

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG 
Sbjct: 394 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGI 443

Query: 607 IIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++A  +  F+    N   +    A        +  + + + S    K +V TG+L ++ R
Sbjct: 444 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSR 503

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
             A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E
Sbjct: 504 DDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDE 551


>gi|253680829|ref|ZP_04861632.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873]
 gi|253562678|gb|EES92124.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873]
          Length = 664

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 200/713 (28%), Positives = 352/713 (49%), Gaps = 58/713 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  ++++  L  E++     YY    P + D +YD        +      L        
Sbjct: 1   MEVKKQKIYKLVDELNKLAYEYYVLDNPSVADKDYDKKYDELVQLEKETGMLLSY----S 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G  +     K TH     SL K  ++E+++ +  +  +   + + N       I 
Sbjct: 57  PTQRVGDVVLGKFEKYTHKGKLWSLGKAQSLEEVKDWHNKNIKAINEYNLNHEDKLPPIK 116

Query: 128 FTLEPKIDGTMITIRYEKG-KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  I   Y      V AA RG G  GED++   + I T+P  L +N   +IE
Sbjct: 117 YIITKKFDGLTINCTYNNDGILVAAATRGTGEIGEDITLQAKTIKTLP--LKINNNALIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           V GE  ++K  F   N     V   P  N RN A+G LR LN  +  R  L+ F + +G 
Sbjct: 175 VHGEAIMTKEAFQEYN----KVADVPLKNLRNGAAGALRNLNVRETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EML+ ++  G P+++ V+  +T   I      ++ IR  L YDIDG+V  
Sbjct: 231 NEGTPFKTYSEMLKFIKEQGIPMDDYVKPCSTVEEIEKEIKYIEKIRDNLNYDIDGIVIA 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +D+   ++ +G   + P+W +++KF  ++A+T+L+D++  +GR+G +TP A LEPV IGG
Sbjct: 291 IDDMKTREVIGYTVKFPKWALAYKFEAQEATTKLIDVEWNVGRSGRVTPTAILEPVEIGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D I             + +++G  V ++R+ +VIP+++ ++ N    + 
Sbjct: 351 VTVKRATLNNMDDISR-----------KGVKLGSVVFLRRSNDVIPEIMGVVENS-LENT 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S VV++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 REIKAPEICPYCGSEVVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+       I+   D++ +++ +        N+  FG+    NL D+I K 
Sbjct: 451 FSEKTAEQLFEE----LDIKSIPDLYRIKKEELL------NLQRFGEKKAQNLIDAIEKS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + +  L + + + Q                +  LI +  +G
Sbjct: 501 KNCDLPSFIYALGIPNVGKKTSIDLCRKFKTLQKLKSAT----------FHDLIAIEDIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I+EF+++   +  ++ LL+       + E    +    K +V TG+L    R +
Sbjct: 551 EIVAESIIEFFKDDTILKNIDELLELGVNPKFQEENIQENIFNGKTVVVTGSLNSFSRSE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +E +  LGA V++ +S+KTD +IVG +PGSK +KA +L VKI++EE+F  ++
Sbjct: 611 IKEKLQSLGAKVASSVSKKTDYVIVGKDPGSKYKKAVELNVKIIDEEKFKNMI 663


>gi|268679995|ref|YP_003304426.1| DNA ligase, NAD-dependent [Sulfurospirillum deleyianum DSM 6946]
 gi|268618026|gb|ACZ12391.1| DNA ligase, NAD-dependent [Sulfurospirillum deleyianum DSM 6946]
          Length = 648

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/702 (30%), Positives = 354/702 (50%), Gaps = 60/702 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E S   + +      YY    PI  D EYD L     A     P  A   D + P  ++
Sbjct: 4   QEYSEKIEILKAWAKAYYVDDAPIASDEEYDRLYHEILAFEKENPLFA---DESSPTKRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K +H     S+E +++  DL  +I R+ +        +  F  EPK DG  
Sbjct: 61  GGMVLEGFNKASHKARMWSMEDVFDEHDLDAWIERVKKV-----KENFTFYCEPKFDGAS 115

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y+KG    A  RGDG  GEDV+  ++ I +IP  L +    +IE+RGEV I K DF
Sbjct: 116 MNLIYDKGVLQQAITRGDGSIGEDVTQNVKTIGSIP--LQIAYEGLIEIRGEVVIKKADF 173

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN+E +      +ANPRNAA+G LR+L+ +    R L F+  G+G+   +  +   E 
Sbjct: 174 ECLNEERLHTNEPLFANPRNAAAGSLRQLDTSVTAKRKLMFYPWGIGENQLVQTRL-SEK 232

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           ++ +  LGF     +        +   Y+E+   R  +   +DG+V KVDE +LQ++LG 
Sbjct: 233 MRFVYDLGFLQPPRIVVTQNVEDVHMLYHELIETRDAIEMMMDGMVVKVDEIALQEELGY 292

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + P+WM++ KF   +  T+L  I +Q+GRTG++TPVA +E VNI G ++  ATLHN D
Sbjct: 293 TVKYPKWMVAFKFPAIEKVTKLRAITLQVGRTGVVTPVAEVEAVNIEGVVVERATLHNFD 352

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V++ R+G+VIPK++ ++V  R         P  CP+C
Sbjct: 353 EIER-----------KDIRIGDSVIIIRSGDVIPKIIKVLVERRDGTEVIPKRPLVCPVC 401

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
              ++           A  +C   L+C A+ +  + HF S+ A NI+GLG + ++  +  
Sbjct: 402 GGELL--------DEGALIKCQN-LSCDARVVGAMIHFASKKALNIDGLGDKIIEQLYAQ 452

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           +     +    D++TL      S  ++  + GF      NL D+I + + ++LE+FI +L
Sbjct: 453 K----VVLHVKDLYTL------SLEQLLALEGFKVKKAQNLLDAIAQSKGVALEKFINAL 502

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI H+G   A+ +A+ +             +         +I +   G+ +A+++VEF  
Sbjct: 503 GIEHIGEVAAKKIARTFG------------LEWLEATHEQIIGLEGFGEEMAKSLVEF-- 548

Query: 618 NPRNICAVE-ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              ++ AVE   L  +   +    +   S    K +V TG++ K  R + +  +  LGA 
Sbjct: 549 --IHVNAVETKELMGIIAPVASKLEITESVFTGKTVVLTGSMSK-SRDEMKAMLESLGAK 605

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           VS  +S+KTD +I G+  GSKL+KA +LGVK ++E +   +L
Sbjct: 606 VSGSVSKKTDFVIFGEEAGSKLDKALELGVKTLSEAEVNEML 647


>gi|257466592|ref|ZP_05630903.1| NAD-dependent DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917747|ref|ZP_07913987.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691622|gb|EFS28457.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 676

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/715 (30%), Positives = 360/715 (50%), Gaps = 50/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++       L++++  + D YY  ++ +I D EYD L +  + +        + ++ 
Sbjct: 2   ISKKEKENRREELQKKLQRYSDAYYSQNESLISDYEYDMLLKELENLEAE----LQIQNK 57

Query: 72  NGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           +     +G  + N    K+ H  P LSL   + I ++  F+ R  +     D+  +    
Sbjct: 58  DSITQTVGSSLKNSKFQKIAHKTPMLSLSNTYQIGEIEDFLLRAKKNLNMTDNLEVEM-- 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  I+I YEKGK V A  RGDG  GEDV+  +  I +IP  LS      IE+RGE
Sbjct: 116 EIKLDGLSISIIYEKGKLVRAVTRGDGIVGEDVTENVLQIESIPHELSEAF--DIEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + +  ++F  LN   I  G + +ANPRNAASG LR+L+P  +  R+L  + + +    + 
Sbjct: 174 IVLPFSEFENLNKIRIEKGEEVFANPRNAASGTLRQLDPKIVKERHLAAYFYFIVNAEQY 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q + +  +  L  P        +    + +        R  L Y+ DGLV K++  
Sbjct: 234 GIHSQKDSIAFLEKLSLPTTGICEIFHNLSDLENRIEHWSKERENLAYETDGLVLKINNI 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SL ++LG   +SPRW +++KF  KQ +T+LLDI  Q+GRTG +TPVA LE V + G+ + 
Sbjct: 294 SLWEKLGSTGKSPRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVK 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D I             +DIR+GD V +++A E+IP+VV  +  +R  + +   
Sbjct: 354 RASLHNYDEIVR-----------KDIRIGDTVFIEKAAEIIPQVVKSVKQDRTGEEKEIE 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CPIC S + R+        +   +C     C  +    +++FVSRD  NI GLG +
Sbjct: 403 APAHCPICNSVLEREQG------LVDLKCINK-HCPGKIQGEMEYFVSRDGMNISGLGGK 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+ F         +   +DI+ L+ R+     ++E +   G  S+ NL +SI + +  S
Sbjct: 456 ILEKFLDLH----YLEDVSDIYYLKERK----EELEQLDKMGKKSIENLLNSIEESKKTS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ++ +++LGI  VG   A+ LAK          E  NI          L ++  +G+ +A
Sbjct: 508 YDKVLYALGIPFVGKVAAKLLAK----------ESKNIFKLQTMTEEELQQIEGIGEKMA 557

Query: 610 QAIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++IV+F+QN      ++ L+      +   G      +   + K  + TGTL K  R + 
Sbjct: 558 RSIVDFFQNEVKKQLIQNLIDIGLCFTLKDGVEASTEAKIWQGKTFLVTGTLSKYTRAEL 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
           QE + + G    + +++K D +IVG+  GSKLEKA+ LG V I+ EE FL L ++
Sbjct: 618 QEDIEKSGGTNLSSVTKKLDYLIVGEKAGSKLEKAKALGSVTILTEEDFLALKEK 672


>gi|330939980|gb|EGH43181.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 731

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q           GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIIDLE------GFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +         
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY--------- 567

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +        E   S+ +E  
Sbjct: 568 -LPDVGLEVAYEIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622


>gi|182419331|ref|ZP_02950583.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521]
 gi|237666454|ref|ZP_04526439.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376662|gb|EDT74234.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521]
 gi|237657653|gb|EEP55208.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 663

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 203/711 (28%), Positives = 351/711 (49%), Gaps = 57/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L ++++ +   YY    P + D EYD +      +     +      P  P 
Sbjct: 2   DKKEKIKELVEQLNNYSYKYYVLDDPSVTDKEYDKIYDELKKLE----EETGFVLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF-----WQKKDDNSIFFTL 130
            ++G  +     K TH     SL+K  +IE++  +  R  +F      + ++   + + L
Sbjct: 58  LRVGDIVLDGFEKYTHKAKLWSLDKAQSIEEIIDWHNRNVKFVNDMRLKGENLPDLKYVL 117

Query: 131 EPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
             K DG  I + Y E+G    AA RG G+ GE+V+A ++ I +IP  +  N   I+EV G
Sbjct: 118 TKKFDGLTINLTYNEEGVMEIAATRGTGNIGENVTAQVKTIKSIPLKIENN--HILEVHG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE 248
           E  +++  F   N+        P  N RN A+G LR LN  +  R  L+ F + +G    
Sbjct: 176 EAVMTQEAFDKYNESAQ----VPLKNLRNGAAGALRNLNVKETARRNLSAFFYDIGYKEG 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   EML  ++  G P+++ ++   T   I    + + SIR  L YDIDGLV  +D+
Sbjct: 232 SPFKTYLEMLNFIKEKGLPMDDYMKVCTTIDEIQEQIDYINSIRFDLNYDIDGLVVAIDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              ++ +G   + P+W I++KF  ++A+T+LL ++  +GR+G L P A LEPV + G  +
Sbjct: 292 MRTRELMGYTVKFPKWAIAYKFEAQEATTKLLGVEWNVGRSGRLAPTAILEPVELAGVTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I             + +++G  V V+R+ +VIP+++ I+       A+  
Sbjct: 352 KRATLNNMDDIAR-----------KGVKIGADVFVRRSNDVIPEIMGIVPETLDG-AEDI 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S ++ D         A + C   L+C  Q ++ + H+  R+A NI G  +
Sbjct: 400 KPPTECPACGSHIILD--------GAHYFCENTLSCKPQMVKSIVHYACREAMNIAGFSE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +  +  F+      +I+  +D++ L+  +     K      FG     NL ++I   +  
Sbjct: 452 RTAEQLFEK----LNIKSISDLYKLKEEELIDLEK------FGPKKAQNLLEAIENSKEC 501

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FI++LGI +VG + A+ L   + S +             N  +  L+ VP VGDI+
Sbjct: 502 ELHAFIYALGIPNVGVKTAKDLVSRFKSIEGLK----------NATFEELVSVPDVGDIV 551

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           AQ ++ F++  + +  ++ LL           +   +    K +V TG+LQ   R + +E
Sbjct: 552 AQDVMSFFKEEKVLETIDELLALGVNPKFEEFEVTENPFMGKTVVATGSLQNYSRSEIKE 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+KTD +I G+  GSKL KAQ+LGVK+++EE+F  +L+
Sbjct: 612 KLESLGAKVAGSVSKKTDYVIAGEAAGSKLTKAQELGVKVLSEEEFEEILR 662


>gi|150015242|ref|YP_001307496.1| NAD-dependent DNA ligase LigA [Clostridium beijerinckii NCIMB 8052]
 gi|190359245|sp|A6LQB0|DNLJ_CLOB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149901707|gb|ABR32540.1| DNA ligase, NAD-dependent [Clostridium beijerinckii NCIMB 8052]
          Length = 663

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 198/709 (27%), Positives = 351/709 (49%), Gaps = 57/709 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L ++++ +   YY    P + D +YD        +            P  P  ++
Sbjct: 5   ERIKELVEKLNRYSYEYYSLDSPSVSDKDYDEKYYELQELERE----TEYVLPYSPTLRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTLEPK 133
           G  +     K TH     SL+K  +++++  +  R  +F ++          + + +  K
Sbjct: 61  GDVVLEGFRKYTHKARLWSLDKAQSLQEIIDWHNRNVKFVEEARGRGENLPDLKYVVTKK 120

Query: 134 IDGTMITIRYE-KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
            DG  I + Y  +G    AA RG G  GE+V+A ++ I +IP  L +N  +I+EV GE  
Sbjct: 121 FDGLTINLTYNTEGILEIAATRGTGSIGEEVTAQVKTIKSIP--LKINSNDILEVHGEAI 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251
           +++  F   N+        P  N RN A+G LR LN  +  R  L+ F + +G       
Sbjct: 179 MTQEAFNKYNE----TSDTPLKNLRNGAAGALRNLNVKETARRNLSAFFYDVGYKEGTPF 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K   EM++ ++  G PV++ +R   +   I    + ++ IR  L YDIDGLV  +D+   
Sbjct: 235 KTYMEMMEFIKQQGLPVDDYIRVCTSIEEIEKEIDYVRDIRFDLNYDIDGLVIAIDDIRT 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ +G   + P+W I+ KF  ++A+T+LLD++  +GR+G + P A LEPV + G  +  A
Sbjct: 295 RELIGYTVKFPKWAIAFKFEAQEATTKLLDVEWNVGRSGRVGPTAILEPVELAGVTVKRA 354

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N D I             + +R+G  V V+R+ +VIP+++ I+       ++  S P
Sbjct: 355 TLNNMDDIAR-----------KGVRIGAEVFVRRSNDVIPEIMGIVPES-LEGSEEISVP 402

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S +V           A + C   L+C  Q ++ + H+ SR+A NI G  ++  
Sbjct: 403 EVCPACGSHLV--------LNGAHYFCENTLSCKPQLVKTIVHYASREAMNIAGFSERTA 454

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+      +I+  +D++ L+        K      F      NL ++I K ++  L 
Sbjct: 455 EQLFEK----LNIKSISDLYKLKEEDLIGLEK------FAAKKAQNLLEAIEKSKDCELY 504

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FI++LGI +VG + A+ L   + S +             N  +  L+ V  VGDI+AQ 
Sbjct: 505 AFIYALGIPNVGVKTAKDLVSRFESIEGLK----------NATFEELVGVQDVGDIVAQG 554

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ F++  + +  +E LL          ++ ++S  E K +V TG+L+   R + ++ + 
Sbjct: 555 VLAFFKEEKVLQTIEELLSLGVSPKYEEKEVIASAFEGKTVVATGSLKNYSRTEIKDKLE 614

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA V+  +S+KTD +I G+  GSKL KA++LG+KI++E++F  +L++
Sbjct: 615 SLGAKVAGSVSKKTDYVIAGEAAGSKLTKAEELGIKILSEDEFEEMLRR 663


>gi|308071012|ref|YP_003872617.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus
           polymyxa E681]
 gi|305860291|gb|ADM72079.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus
           polymyxa E681]
          Length = 680

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/715 (28%), Positives = 338/715 (47%), Gaps = 60/715 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
             +  L  E++ ++  YY   +P I D EYD L     A+       +    P+ P  ++
Sbjct: 14  HRMEQLVAELNTYNYHYYTLDEPKISDKEYDVLYDELVALE----QTSGLVLPDSPTQRV 69

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-------QKKDDNSIFFTLE 131
           GGE+        H  P  SL+K  N+E LR +  R+ +          ++   S  + +E
Sbjct: 70  GGELLKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEQPLPSPGYAIE 129

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + Y  G+ V A+ RG+G  GE + A ++ I ++P  +       IEV+GE 
Sbjct: 130 LKFDGLTLNLTYTDGQLVQASTRGNGVVGEGILAQVKTIKSVPLTIPFRN-GTIEVQGEG 188

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            ++ +     N   +     P  N RNAA+G LR LNP     R LN F + +G    I 
Sbjct: 189 IMNLSVLSKYNKTAVD----PLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADRIQ 244

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                EM+  +R   F VN  +   + F  ++    E++  R+ L Y IDG V K+ +  
Sbjct: 245 FNSHQEMMTFLRENHFKVNPYLTYFDNFEDVMEQLIEIEESRAGLDYLIDGAVLKITDMR 304

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + PRW +++KF  ++ +T L  ++  +GRTG +TP+AR+EPV + G  + N
Sbjct: 305 TREALGYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQN 364

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TL+N   I+         R      +G RV ++R+ +VIP+++  + +E   +      
Sbjct: 365 CTLNNAGDIE---------RKNLKFALGARVFIRRSNDVIPEILGKVTSENDGEE--IVV 413

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C   + +          A   C   L C  Q + R+ HF SRDA +IE    + 
Sbjct: 414 PDHCPACGFPLQQR--------GAHLFCDNKLGCKPQIVARISHFASRDAMDIETFSDKT 465

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                        +R PAD++TLQ        +      FG+   +NL  ++ K ++  L
Sbjct: 466 AIQLHDE----LEVREPADLYTLQYDDLVKLER------FGEKKASNLLAALEKSKDRDL 515

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             F+++LGI + G    R LA++Y                       LI +P VG I+A+
Sbjct: 516 ASFLYALGIPNTGKATTRMLAEHYRDLHKTMSAT----------VEELIELPDVGGIVAE 565

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +IV F+ +P     +E +L     +       EK   S    K +V TGTL ++ R +A 
Sbjct: 566 SIVAFFADPFTQAGIEKMLSLGVKAQAPEAPQEKKTDSFFSGKTVVLTGTLHQLTRDEAV 625

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQY 721
             +  +GA V+  +S+KTD++I G+  GSKL KAQQLG+  + +E++F+ LL+Q 
Sbjct: 626 SKLEAMGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIEDEDEFIRLLEQE 680


>gi|148381215|ref|YP_001255756.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 3502]
 gi|153931904|ref|YP_001385590.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. ATCC
           19397]
 gi|153935840|ref|YP_001388996.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. Hall]
 gi|166215576|sp|A7FYL7|DNLJ_CLOB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215577|sp|A5I6Z7|DNLJ_CLOBH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148290699|emb|CAL84829.1| DNA ligase [Clostridium botulinum A str. ATCC 3502]
 gi|152927948|gb|ABS33448.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 19397]
 gi|152931754|gb|ABS37253.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. Hall]
          Length = 664

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/714 (28%), Positives = 358/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  +  N   +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNN--HVIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +  R  L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYN----KAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++  E   ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVV-EESLEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+       I+  AD++ +++ +  +  K      F D    NL D+I   
Sbjct: 451 FSEKTAEQLFEK----LDIKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESIK----------NTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +   +K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKVISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|168179082|ref|ZP_02613746.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916]
 gi|182670115|gb|EDT82091.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916]
          Length = 664

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/714 (28%), Positives = 356/714 (49%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  +  N   +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNN--HVIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +  R  L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYN----KAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++      ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             K+  +  F+       I+  AD++ +++ +  +  K      F D    NL D+I   
Sbjct: 451 FSKKTAEQLFEK----LDIKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESIK----------NTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +    K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|310644240|ref|YP_003948999.1| DNA ligase, nad-dependent [Paenibacillus polymyxa SC2]
 gi|309249191|gb|ADO58758.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2]
          Length = 671

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/715 (28%), Positives = 337/715 (47%), Gaps = 60/715 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
             +  L  E++ ++  YY    P I D EYD L     A+       +    P+ P  ++
Sbjct: 5   HRMEQLVAELNTYNYHYYTLDDPQISDKEYDVLYDELVALE----QTSGLVLPDSPTQRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-------QKKDDNSIFFTLE 131
           GGE+        H  P  SL+K  N+E LR +  R+ +          ++   S  + +E
Sbjct: 61  GGEILKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEQPLPSPGYAIE 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + Y  G+ V A+ RG+G  GE + A ++ I ++P  +       IEV+GE 
Sbjct: 121 LKFDGLTLNLTYTDGQLVQASTRGNGVVGEGILAQVKTIKSVPLKIPF-QNGTIEVQGEG 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            ++ +     N++ +     P  N RNAA+G LR LNP     R LN F + +G    I 
Sbjct: 180 IMNLSVLSNYNEKAVE----PLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADRIQ 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                EM+  +R   F VN  +   + F  ++    E++  R+ L Y IDG V K+ +  
Sbjct: 236 FNSHQEMMTFLRENHFKVNPYLTYFDNFDDVMEQLIEIEESRAGLDYLIDGAVLKITDMR 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + PRW +++KF  ++ +T L  ++  +GRTG +TP+AR+EPV + G  + N
Sbjct: 296 TREVLGYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TL+N   I+         R      +G RV ++R+ +VIP+++  + +E   +      
Sbjct: 356 CTLNNAGDIE---------RKNLKFALGARVFIRRSNDVIPEILGKVTSENDGEE--IVV 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C   + +          A   C   L C  Q + R+ HF SRDA +IE    + 
Sbjct: 405 PEHCPACGFPLQQR--------GAHLFCDNKLGCKPQIVARISHFASRDAMDIETFSDKT 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                        +R PAD++TLQ        +      FG+    NL  ++ K +   L
Sbjct: 457 AIQLHDE----LGVREPADLYTLQYDDLVKLER------FGEKKANNLLAALEKSKERDL 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             F+++LGI + G    R LA++Y           + +          I +P VG I+A+
Sbjct: 507 ASFLYALGIPNTGKATTRMLAEHYRDLHKTMSATVDEL----------IELPDVGGIVAE 556

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQ 667
           +IV F+ +P     +E +L     +       V    S    K +V TGTL ++ R +A 
Sbjct: 557 SIVAFFADPFTQAGIEKMLSLGVKAQAPEAPQVKKIDSFFSGKTVVLTGTLHQLTRDEAA 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQY 721
             +  LGA V+  +S+KTD++I G+  GSKL KAQQLG+  + +E++F+ LL+Q 
Sbjct: 617 SRLEALGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIEDEDEFIRLLEQE 671


>gi|261414540|ref|YP_003248223.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261370996|gb|ACX73741.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326001|gb|ADL25202.1| DNA ligase (NAD+) [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 715

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/726 (28%), Positives = 356/726 (49%), Gaps = 59/726 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R     L++++      YY+     + D ++D   +  +A+   +P+L           K
Sbjct: 9   RTRYFELKKQLEEASRLYYKDGVSPMSDQDFDFGLKEMEALEAKYPELRGK---GSLTQK 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEPKID 135
           +G ++     KV H++P LS+  +++ E++R+F+              +S  +  E KID
Sbjct: 66  VGSDLTNDFAKVAHAVPMLSIANVYSEEEMREFVKAAEEGLSSFVSRLSSKKWICERKID 125

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR-----VLSLNIPEI----IE 186
           G  +++ YE G+   AA RGDG  G+DV+     I  IP       L ++  EI     E
Sbjct: 126 GVSLSVIYENGRLKQAATRGDGAQGDDVTLNALTIADIPEYFDAKKLKIDPSEIPQGTFE 185

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           VRGEVY+ +  F  LN++ I   +K + N RN  SG L+  +  +  TR + FF + + +
Sbjct: 186 VRGEVYMEREAFERLNEQFILENKKTFQNCRNTVSGSLKLKSVAECKTRPMRFFAYHIPQ 245

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           ++    K   E L++++ LGF  N+    A+T   I++   ++ + R +LP+DIDG+V K
Sbjct: 246 SNN---KTHEENLKQLKRLGFHTNDYWT-ADTVDEIMAISEKIGASRDSLPFDIDGMVVK 301

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +++   Q++LG  ++SPRW I++KF  ++A T LL ++ Q+GRTG +TPVA L PV + G
Sbjct: 302 LNDLQQQRELGSTSKSPRWAIAYKFKAERAYTPLLSVEFQVGRTGAVTPVANLAPVRLAG 361

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATLHN D +  L           D+  GD V V++ GE+IPK+ D+    R   A
Sbjct: 362 TTVKRATLHNFDEVARL-----------DLHYGDTVGVEKGGEIIPKITDVKRELRPAGA 410

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P   P  CP+C  ++               RC   L C AQ     +HFVSR+A NIE 
Sbjct: 411 SPVVAPEKCPVCGEQLTHIDGE------VILRCEN-LHCKAQVQCLFEHFVSREAMNIEN 463

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG   +     +      I+   D++ L          +E+       S  N++D+I   
Sbjct: 464 LGPALIASLLATGK----IKRIPDLYRLT------LEDLESQERMAKKSAKNVFDAIQAS 513

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SLE  +  LGIR VG   AR++AK++ + +                   L  V  VG
Sbjct: 514 KQRSLENLLHGLGIRFVGRTSARNIAKHFRTLEKIRTAT----------VEELQNVTDVG 563

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           + I +++ EF+  P     ++ L+    P+    +  V +  + +  V TGTL  + R +
Sbjct: 564 ERIGKSVYEFFHTPLYTNEIDELVALGLPT--EFKGVVKTLFQGQTAVITGTLPNMDRDE 621

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           A++ + + G  VS  +S+KT  ++ G+  GSKL KA +LG+ + +E   +  +   + + 
Sbjct: 622 ARKLIEENGGKVSGSVSKKTSWVLAGEAAGSKLTKANELGIPVHDEAWLMAQIANADESG 681

Query: 726 RIHDDD 731
              D++
Sbjct: 682 DAPDEN 687


>gi|237738042|ref|ZP_04568523.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817]
 gi|229419922|gb|EEO34969.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817]
          Length = 663

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/700 (31%), Positives = 349/700 (49%), Gaps = 50/700 (7%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
            ++I  + D YY  ++ +I D E+D L      +   +P+       N P   +G     
Sbjct: 2   REKIKKYSDYYYTNNESLISDVEFDKLLVELKELEEKYPEYKEK---NSPTEIVGATSLK 58

Query: 85  S--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                KV H  P LSL   +N  D+  FI R+ +     ++ ++ + LE K+DG  ++I+
Sbjct: 59  ETKFQKVAHKKPMLSLSNSYNEGDISDFIERVKKLLP--EEKNLAYALELKLDGLSLSIQ 116

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE+GK V A  RGDG  GEDV+  I  I +IP++L   +   IE+RGEV +  + F  LN
Sbjct: 117 YEEGKLVRAVTRGDGTVGEDVTENILEIESIPKILKEKV--SIEIRGEVVLPLSKFEELN 174

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
            + +  G + +ANPRNAA+G LR+L+ + I  R L+ + + L        K   E ++ +
Sbjct: 175 KKRMENGEEVFANPRNAAAGTLRQLDSSIIKERGLDAYFYFLVDAQNYGVKTHSESIEYL 234

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LG               ++S        R +L Y+ DG+V KVD   L  +LG   +S
Sbjct: 235 AKLGIKTTGVCEVLKNSSELISRIEYWGEKRESLDYETDGMVIKVDNIELWDKLGNTTKS 294

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I+ KF  KQ +T++L +  Q+GRTG +TPVA LE V + G+ +  A+LHN   I+ 
Sbjct: 295 PRWAIAFKFPAKQVTTKILGVTWQVGRTGKVTPVAELEEVELSGSRVKRASLHNYQEIER 354

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD V +++A E+IP+VV  +   R  +      P+ CPIC ++V
Sbjct: 355 -----------KDIRIGDSVFIEKAAEIIPQVVKAVKELRDGNEIIIKEPTHCPICNTKV 403

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+            RC   ++C  +    L +FVSRDA NI G G + ++   +     
Sbjct: 404 EREEGQ------VDIRCPN-ISCPGKIEGELIYFVSRDAMNIAGFGSKIVENMLR----L 452

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I+   DI+ L+  +     ++E +   G  SV NL  +I   +     + + +LGI  
Sbjct: 453 GFIKNIVDIYELKNHR----EELEKLEKMGKKSVDNLLTAIENSKTREYSKVLCALGIPF 508

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   A+ LA    +               +     L+ +  +GD +AQAI +F+++   
Sbjct: 509 VGKTSAKLLADSSGNIDKLM----------SMSVEELMEIEGIGDKMAQAIFDFFRDEEK 558

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
              +E L       I   ++ + +E      K  +FTGTLQ   R++ +E + +LG    
Sbjct: 559 KKLIEGLKAHGLTFIQERKEELPAEEKVFTGKTFLFTGTLQNFTRNEIKEEIEKLGGKNL 618

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFL 717
           + +S+  D +IVG+  GSKL+KAQ+LG VKI+ EE+F+ +
Sbjct: 619 SAVSKNLDYLIVGEKAGSKLKKAQELGTVKIITEEEFMKI 658


>gi|218532981|ref|YP_002423797.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4]
 gi|254781363|sp|B7KU78|DNLJ_METC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218525284|gb|ACK85869.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4]
          Length = 814

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/622 (40%), Positives = 373/622 (59%), Gaps = 31/622 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +EALS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   FP L  +
Sbjct: 10  VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            + +     +G + +    KV H++P LSL   +  ED+ +F+ R+ RF     + ++ F
Sbjct: 70  TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEEAVAF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187
           T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  L    IPE++EV
Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGEGIPEVLEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE+Y+S  DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  G+ 
Sbjct: 187 RGEIYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDIDG+VYKV
Sbjct: 247 SEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDIDGVVYKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG 
Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++ +R  DA 
Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIEKRPADAV 426

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+  ++EG 
Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGLDLEGF 486

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTKIEN---------- 526
           G+  ++  F+    A  ++ PAD+F L+          RR+  S  +             
Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRTEGEPAPKKPTK 542

Query: 527 -ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                 D ++ NL  S++ RR I L RF+F+LGI  +G   A++LAK +         + 
Sbjct: 543 KKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAALA 602

Query: 586 NI-IAHNNDDWLSLIRVPLVGD 606
                    DWL L  +P +G 
Sbjct: 603 AATREQAGRDWLELSALPRIGP 624



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 5/169 (2%)

Query: 556 SLGIRHVGAEIA---RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQA 611
           SLG R  G        ++  +Y S       +    +    D   L      +G +   +
Sbjct: 646 SLGARLRGRLTPSQREAVLAHYGSEAEADAALERAASQRPGDAYRLFADDGEIGPVATDS 705

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +++F+  P N  AV ALL+EV  +        ++    K +VFTG+L+K+ R +A+    
Sbjct: 706 LIQFFSEPHNDAAVRALLEEVG-TEPLAATTSAAAFAGKTVVFTGSLEKMTRSEAKATAE 764

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +LGA VS  +S KTD+++ G   GSKL+ A++ GVK+++E+ +L +L +
Sbjct: 765 RLGAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813


>gi|224418026|ref|ZP_03656032.1| NAD-dependent DNA ligase LigA [Helicobacter canadensis MIT 98-5491]
 gi|253827358|ref|ZP_04870243.1| DNA ligase, NAD-dependent [Helicobacter canadensis MIT 98-5491]
 gi|313141565|ref|ZP_07803758.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter
           canadensis MIT 98-5491]
 gi|253510764|gb|EES89423.1| DNA ligase, NAD-dependent [Helicobacter canadensis MIT 98-5491]
 gi|313130596|gb|EFR48213.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter
           canadensis MIT 98-5491]
          Length = 650

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/696 (32%), Positives = 362/696 (52%), Gaps = 60/696 (8%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
           + ++     YY    PI  D EYDAL  +        P        + P  ++G  +  S
Sbjct: 11  KTLNLWAKHYYILDDPIASDEEYDALYHQIKEFEANNP---TQISKDSPTQRVGDRILES 67

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
             K  H     SL+ I+N ++L+ +I R+ +      D ++ FT++PK DG  + + YE 
Sbjct: 68  FNKSEHIERMWSLDDIFNTQELQDWINRVSK------DENLNFTIDPKFDGASLNLLYEN 121

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G    A  RGDG  GE+V+   + IP+IP  LS+   + IE+RGE  I+K+DF A+N E 
Sbjct: 122 GILQKATTRGDGFIGEEVTQNAKTIPSIP--LSIPYTDKIEIRGECVIAKDDFEAINQER 179

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
           +  G   +ANPRNAA+G LR+L+    + R L F   G+G   +I  +  + +++K+R  
Sbjct: 180 LENGEALFANPRNAAAGSLRQLDSKITSKRKLQFIPWGVGFC-QINEESFFALMEKIRSF 238

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF  +   +  +    I   Y  + S R + P  +DG+V +VD   LQK LG   ++PR+
Sbjct: 239 GFIASPFSKLCSNLQAIEDSYQNLISKRDSYPITLDGMVIRVDNIPLQKSLGFTIKAPRF 298

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             ++KF   +   ++LDI +Q+GRTG++TPVA LEPV I GA ++ ATLHN D IK    
Sbjct: 299 ACAYKFPAIEKKAKILDIVLQVGRTGVITPVAILEPVMIEGAKVSRATLHNFDEIKK--- 355

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   +DI + D V++ R+G+VIPK++  +   R    +    P+ CPIC S ++ +
Sbjct: 356 --------KDILINDSVILIRSGDVIPKIIKSLPTLRDGTQKQCKMPTHCPICNSELLIE 407

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                       +C   L C A+    L HF+S+ A NI+GLGK+ +D  F+       I
Sbjct: 408 E--------KLIKCQN-LNCKARVKNSLIHFISKKALNIDGLGKRIIDLLFELGK----I 454

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
               DIF+LQ              GF D  + NL ++I + + I L RFI +LGI H+G 
Sbjct: 455 TKIEDIFSLQYEDLEGLE------GFKDKKIHNLLNAIKQAKGIDLWRFINALGIEHIGE 508

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             ++ LA  + +               +  +   + +   G+ +A ++VEF     N   
Sbjct: 509 GASKKLANTFGN------------DFYHKSFEDFVVLDGFGEEMANSLVEFCHV--NQER 554

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           +  LL  + P    ++   ++ + N+  V TGTL + +R   QE +  LGA VS+ +S+K
Sbjct: 555 INHLLAILQPKC--NQSTTNANLSNQTFVITGTLSQ-KREVYQEILESLGAKVSSSVSKK 611

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           T+ ++ G+  GSKL KAQ+LGVK+++EE F  L+Q+
Sbjct: 612 TNFLLCGEEAGSKLTKAQELGVKVISEEDFWNLIQE 647


>gi|300709542|ref|YP_003735356.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3]
 gi|299123225|gb|ADJ13564.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3]
          Length = 703

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/728 (31%), Positives = 366/728 (50%), Gaps = 55/728 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L PI+ L  ++A +E   L + I +HD  YY  + P I D  YD L +R   I  +F   
Sbjct: 17  LTPIDEL--DEAEREARRLREAIRHHDRRYYVENDPEIADRTYDTLFQRLVDIEESFG-- 72

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              + P+ P  ++GGE    L  V H  P LS+++  +  D+R+F  R+ R     +   
Sbjct: 73  --LQIPDSPTRRVGGEPVEELETVEHVAPMLSIQQSGDAADVREFAERMDR-----EIGE 125

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +T EPK DG  I + Y++G F  A  RG+G  G+DVSA +R I +IP+ L    P+ +
Sbjct: 126 VTYTCEPKFDGVSIEVVYDEGVFERAVTRGNGREGDDVSANVRTIRSIPQRLRGEYPDFL 185

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
            VRGE+++ ++ F A N E +  G +P+ANPRNA +G +R+L+PT    R L+ F + + 
Sbjct: 186 AVRGEIFMPRDAFQAYNRERVERGDEPFANPRNATAGTIRQLDPTVTAERPLDCFFYDIL 245

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             SE  A   +E L  +   G   N+    A      ++Y + +   R  L Y+IDG+V 
Sbjct: 246 DASEGIA-THWEELDALESYGLQTNDRAELAADIDEAIAYRDRLVEDREGLNYEIDGVVI 304

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVDE +  ++LG  +R  RW  ++KF  +   T + D+ +Q+GRTG LTPVA L+PV++G
Sbjct: 305 KVDEKAACEELGTTSRHYRWAFAYKFPARAGETAIQDVALQVGRTGRLTPVALLDPVDVG 364

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A+LHN   I+            +++ VGD V V+RAG+VIP V +++  +R   
Sbjct: 365 GVTVSRASLHNPAEIE-----------EKEVNVGDVVRVERAGDVIPYVDEVV-EKRS-- 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           +  F FP+ CP+C S + RD             CTGGLAC AQ    ++++ S    +IE
Sbjct: 411 SGYFEFPATCPVCDSAIERD--------GPIAFCTGGLACPAQLRRSVEYYASDSGLDIE 462

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +++D   +           AD++ L+R           + G+G  S  NL   +  
Sbjct: 463 GLGGERVDQLLE---AGLVEESVADLYRLERADLV------ELEGWGQKSAENLLAELEA 513

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++  L  F+ ++GI HVG   AR LA  +           + +            V  +
Sbjct: 514 SKSPPLFAFLAAIGIPHVGRATARELAGAFGDLDGLMDASEDEL----------REVDEI 563

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+++A+ I +F+ +  N   +  L +         ++     +    +VFTG+L    R 
Sbjct: 564 GEVVAREIRDFFDSEGNRRVLRELREAGVEPERAEDRESGDTLSGLTVVFTGSLPDRTRS 623

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +AQ  +   G  V+  +S  TD ++VG+NPG SK E A   GV  +  E+F  L+ +   
Sbjct: 624 EAQGLIEGAGGSVTGSVSGNTDYLVVGENPGSSKREDAADEGVPELTPEEFEALVDESEE 683

Query: 724 TLRIHDDD 731
             R    +
Sbjct: 684 ADRQEQQE 691


>gi|195938757|ref|ZP_03084139.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 556

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/591 (36%), Positives = 340/591 (57%), Gaps = 43/591 (7%)

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 1   MDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 60

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 61  LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 120

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 121 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 180

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 181 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 240

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 241 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 289

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P++CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 290 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 343

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +  + 
Sbjct: 344 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 393

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +          A        L +VP VG ++A 
Sbjct: 394 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 443

Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +    A        I  + + + S    K +V TG+L ++ R  A+
Sbjct: 444 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 503

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 504 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 554


>gi|170756080|ref|YP_001782894.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B1 str. Okra]
 gi|254781294|sp|B1ING1|DNLJ_CLOBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169121292|gb|ACA45128.1| DNA ligase, NAD-dependent [Clostridium botulinum B1 str. Okra]
          Length = 664

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/714 (28%), Positives = 357/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  L +    +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNSHVIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +  R  L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYN----KAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++      ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+       I+  AD++ +++ +  +  K      F D    NL D+I   
Sbjct: 451 FSEKTAEQLFEK----LDIKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESIK----------NTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +   +K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|315649754|ref|ZP_07902837.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453]
 gi|315274728|gb|EFU38109.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453]
          Length = 670

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/715 (29%), Positives = 341/715 (47%), Gaps = 60/715 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E++ ++  YY   +P++ D EYDAL  +  A+            P+ P  +
Sbjct: 4   KEKMGKLITELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAE----TGVTLPDSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-------QKKDDNSIFFTL 130
           +GGE+        H  P  SL+K  NIE LR +  R+ R               +  + L
Sbjct: 60  VGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPNPCYAL 119

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K DG  + + Y+ GK V A+ RG+G  GE +   ++ I ++P  +  +    IEV+GE
Sbjct: 120 ELKFDGLTLNLTYQDGKLVQASTRGNGAVGEGILPQVKTIKSVPLTIPYDE-GTIEVQGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
             ++ +     N         P  N RNAA+G LR L+P     R LN + + +G +  I
Sbjct: 179 GIMNLSVLEKYNQTAAE----PLKNARNAAAGALRNLSPKVTAERKLNAYFYNVGYSDGI 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 EM+  +R     VN  +     F  ++    +++  RS L Y IDG V KV +F
Sbjct: 235 TFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVKVTDF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            +++ LG   + PRW +++KF  ++ +T L  +   +GRTG +TP+AR+EPV + G  + 
Sbjct: 295 RIREALGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAGVTVQ 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           N TL+N   I+         R      +G RV ++R+ +VIP+++  +  E   +   F 
Sbjct: 355 NCTLNNIGDIE---------RKNLKFALGSRVFIRRSNDVIPEILGKVTEENDGEEILF- 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   + +          A   C     C  Q + R+ HF SRDA +IE    +
Sbjct: 405 -PVECPSCGFPLEQR--------GAHLFCNNKTGCKPQIVARITHFASRDAMDIETFSDK 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                ++       +R PAD++TL      S   +  +  FG+    NL D+I K +   
Sbjct: 456 TAIQLYEE----LGVREPADLYTL------SFDSLVKLERFGEKKAQNLLDAIEKSKERD 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L  F+F+LGI + G    + LA +Y             +          + +P VG I+A
Sbjct: 506 LASFLFALGIPNTGKSTTKMLADHYRDLHRVMAATAEEL----------VELPDVGGIVA 555

Query: 610 QAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKA 666
            +I  ++ +P    ++E +    V        K VSS+     K +V TGTL  + R +A
Sbjct: 556 DSIAGYFADPFAQASIEKMLSLGVQAQAPEAPKPVSSDSYFSGKTVVLTGTLHLLTREEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720
            E +  LGA V+  +S+KTD++I G+  GSKL KAQQLG+ I+ +EE+F+ LL +
Sbjct: 616 TERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670


>gi|322807581|emb|CBZ05156.1| DNA ligase [Clostridium botulinum H04402 065]
          Length = 664

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/714 (28%), Positives = 357/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  L +    +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNDHVIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +  R  L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYN----KAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++      ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+       I+  AD++ +++ +  +  K      F D    NL D+I   
Sbjct: 451 FSEKTAEQLFEK----LDIKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESIK----------NTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +   +K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMSKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|153940260|ref|YP_001392616.1| NAD-dependent DNA ligase LigA [Clostridium botulinum F str.
           Langeland]
 gi|166215578|sp|A7GIK6|DNLJ_CLOBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152936156|gb|ABS41654.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. Langeland]
 gi|295320603|gb|ADG00981.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. 230613]
          Length = 664

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/714 (28%), Positives = 357/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  L +    +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNSYVIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +  R  L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYN----KAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  +R +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++      ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+       I+  AD++ +++ +  +  K      F D    NL D+I   
Sbjct: 451 FSEKTAEQLFEK----LDIKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESIK----------NTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +   +K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|302874256|ref|YP_003842889.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B]
 gi|307689480|ref|ZP_07631926.1| NAD-dependent DNA ligase LigA [Clostridium cellulovorans 743B]
 gi|302577113|gb|ADL51125.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B]
          Length = 665

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 200/716 (27%), Positives = 360/716 (50%), Gaps = 60/716 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I  ++K +  L ++++     YY    P I D EYD L      +      +      
Sbjct: 1   MEISDSKKRIEELIEQLNKFAYEYYALDNPSISDKEYDKLYDELTILEKETGYILSY--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------S 125
             P  ++G  +     K  H     SL+K  + E++ ++  R  +   + +         
Sbjct: 58  -SPTQRVGDGILSQFSKYIHKGRLWSLDKAQSFEEIIEWHNRNVKAVMQYNKENADKLPP 116

Query: 126 IFFTLEPKIDGTMITIRYEKG-KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           + + +  K DG  +   Y+     + AA RG G  GED++A  + I  +P  L ++   +
Sbjct: 117 LEYVITKKFDGLTLNCTYDNDGIMIKAATRGTGEIGEDITAQAKTIKALP--LKVDHKGL 174

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
            E+ GE  ++K  F A N++          N RN A+G LR LN  +   R L+ F + +
Sbjct: 175 FEIHGEAIMTKEAFDAYNEKA----EVKLKNLRNGAAGALRNLNLKETAKRNLSAFFYDV 230

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G       +   +M++ +R   FP+++ ++ A     I +    + SIR+ L YDIDG+V
Sbjct: 231 GYNEGDPFESYIDMMKFIREKNFPIDDYMKIARDTEDIKNEIEYINSIRADLNYDIDGIV 290

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
             +++   +  LG   + P+W I++KF  ++ +T LLD++  +GR+G ++P A LEPV++
Sbjct: 291 IVINDMRTRAVLGYTIKFPKWAIAYKFEAEETTTELLDVEWNVGRSGRVSPTALLEPVDL 350

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +  ATL+N D IK            +++++G+RV V+R+ +VIP+++ +       
Sbjct: 351 GGVTVKRATLNNMDDIKR-----------KNVKIGNRVFVRRSNDVIPEIMGVAEEL--E 397

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +A+    PS CP C S ++         + A + C   L+C  Q ++ + HF SR+A NI
Sbjct: 398 NAREIIAPSNCPSCGSELM--------LVGAHYFCENTLSCKPQMVKSIVHFGSREAMNI 449

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EG  ++  +  ++  D    ++  +D++ L++ +  +  K      FGD    NL D+I 
Sbjct: 450 EGFSEKTAEQLYEKVD----LKTLSDLYKLKKEELLNLEK------FGDKKAQNLLDAIE 499

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +   L  FI++LGI +VG + A+ L K   S +   +            +  L+ +  
Sbjct: 500 KSKECELASFIYALGIPNVGKKTAKDLCKNLKSLEGIKKAT----------YEDLLAIED 549

Query: 604 VGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           +G+I+A+ I+EF+ + + + +++  L   VSPS      N  S   +K +V TGTL+   
Sbjct: 550 IGEIVAKCIIEFFSDEKILRSIDELLAVGVSPSYEETLVNDQSSFMDKTVVVTGTLKNFS 609

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R + ++ +  LGA VS  +S+KTD +I G+  GSK +KA  LG+KI++EE+FL ++
Sbjct: 610 RTEIKDKLEALGAKVSGTVSKKTDYVIAGEAAGSKYDKAISLGIKILSEEEFLAMI 665


>gi|187734527|ref|YP_001876639.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835]
 gi|254781249|sp|B2UL69|DNLJ_AKKM8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187424579|gb|ACD03858.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835]
          Length = 794

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/777 (28%), Positives = 368/777 (47%), Gaps = 104/777 (13%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L  E+  H+  YY+ ++P I D+EYDAL    + +  A P+L    DP+ P  
Sbjct: 45  AHRRIDYLRSELRRHNRLYYEQAEPEISDAEYDALFLELEKLEKAHPEL---SDPDSPTR 101

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWN-------IEDLRKFITRIYRFWQKKDDNSIFFT 129
           ++GG       ++ H++P LS++ I+         E+L +F  ++ R  Q     ++  +
Sbjct: 102 RVGGAPLQGFNQIRHAVPMLSIDDIFEQRDAPVPDEELAEFYHKLSRALQT---ENVPVS 158

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +EPKIDG  ++I Y  GK  YAA RGDG  G+DV+A +R I ++P  L    P ++EVRG
Sbjct: 159 VEPKIDGVALSIMYRNGKLAYAATRGDGDVGDDVTANVRTIRSVPLTLPPGAPPVLEVRG 218

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           EV++    F  LN+E  A G   +ANPRNA +G L++L+P  +  R L F  HGLG    
Sbjct: 219 EVFMPNEAFAKLNEERDADGLPAFANPRNATAGTLKQLDPRQVAARPLAFLAHGLGAYEG 278

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              +   +    +R  G P N  V   ++         ++  +R TLPY  DG V K+  
Sbjct: 279 PELRDAKDFWNMLRHCGIPCNEPVYYTDSLESTRQAVRDIDRLRHTLPYGTDGAVIKISS 338

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + ++ LG  AR+PRW  ++KF  +Q  T LL+I +Q+GRTG+LTPVA L+PV + G+ +
Sbjct: 339 TATREALGATARAPRWAAAYKFPPEQKETTLLNIVVQVGRTGVLTPVAELQPVLLSGSTV 398

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN+D I             +D+R+GD VLV++AGE+IP V+ + +++R  DA+P+
Sbjct: 399 ARATLHNQDEIDR-----------KDVRIGDTVLVEKAGEIIPAVLKVNLSKRPQDARPY 447

Query: 429 S----FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           S        CP C + ++++          A RCT    C AQ +  + HF SR A ++E
Sbjct: 448 SILEATKGLCPACGNPIMKEEGK------VAWRCTN-FTCPAQAVTGITHFCSRSALDVE 500

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT--STTKIENILGFGDVSVTNLYDSI 542
            +G    +    S           D+F+L   Q    +    E    +G+ +     D++
Sbjct: 501 SIGSSVAEALRSS----GLASSALDLFSLMPDQLANLNLGTPEEPRRYGEKNARKALDAL 556

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA--------------------- 581
              R + LER++ + GI  VG  +A++LA  +   ++ A                     
Sbjct: 557 QNARGLPLERWLIAFGIPLVGEVVAKALADTHPDLKHVADSPYLRDIVRLDELVEQAAKT 616

Query: 582 -------------------------QEINNIIAHNNDDWLSLIRV----------PLVGD 606
                                    QE+   I      +L+   +            +G 
Sbjct: 617 NPNTRENKKAVKEGALSAEAVQERHQELMEEIDRLTAPYLATGYLRKNTAKFSYGSEIGV 676

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIENKKLVFTGTLQKI 661
             A+++  F+ +      ++ L +       +       +  +  +  K  V TGTL   
Sbjct: 677 AAAKSLRSFFASAAGNHTMDVLHRLGINPQSQSYRASLLEIPAGSLSGKTFVITGTLSHP 736

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R   ++ +   G   +  +S+ T  ++ G+  GSK +KA +LGV +++EE F  ++
Sbjct: 737 -RDYFEQLIASHGGKATGAISKSTSCLLAGNGGGSKRDKALKLGVPVISEEDFYKMI 792


>gi|257452731|ref|ZP_05618030.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
 gi|317059272|ref|ZP_07923757.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
 gi|313684948|gb|EFS21783.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
          Length = 676

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/715 (31%), Positives = 364/715 (50%), Gaps = 50/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++       L++++  + D YY  ++ +I D EYD L +  + +        + E+ 
Sbjct: 2   ISKKEKENRREELQKKLQRYSDAYYSQNESLISDYEYDMLLKELEQLEKE----LQIENK 57

Query: 72  NGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           +    K+G  + N    K TH  P LSL   + I ++  F+ R  +     D+  +    
Sbjct: 58  SSITQKVGSSLKNTKFQKTTHKTPMLSLSNTYEIGEIEDFLLRAKKNLNMTDNLEVEM-- 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  I+I YEKGK V A  RGDG  GEDV+  +  I +IP  LS      IE+RGE
Sbjct: 116 EIKLDGLSISIIYEKGKLVRAVTRGDGIVGEDVTENVLQIESIPHELSEAF--DIEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           + +  ++F  LN   I  G + +ANPRNAASG LR+L+P  +  R+L  + + +    + 
Sbjct: 174 IVLPFSEFENLNKIRIEKGEEVFANPRNAASGTLRQLDPKIVKERHLAAYFYFIVNAEQY 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E +  +  L  P             +    N   S R  LPY+ DGLV K+++ 
Sbjct: 234 GIHSQKESILFLEKLSLPTTKICEIFQDSSKLEDRINYWSSEREKLPYETDGLVLKINDI 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SL ++LG   +SPRW +++KF  KQ +T+LLDI  Q+GRTG +TPVA LE V + G+ + 
Sbjct: 294 SLWEKLGSTGKSPRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVK 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D I             +DIR+GD V +++A E+IP+VV  +  +R    +   
Sbjct: 354 RASLHNYDEIVR-----------KDIRIGDTVFIEKAAEIIPQVVKAVKEDRTGKEKKIE 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CPIC+S + R+      + +   +C     C  +    +++FVSRD  NI GLG +
Sbjct: 403 APEHCPICESILERE------EGLVDLKCINK-HCPGKIQGEMEYFVSRDGMNISGLGGR 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+           +   +DI++L+ ++     ++E +   G  S+ NL  SI + +  S
Sbjct: 456 ILEKLLSLH----YLENVSDIYSLKEKR----EELEQLDKMGKKSIENLLSSIEESKKTS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ++ +++LGI  VG   A+ LAK          E  NI+         L ++  VG+ +A
Sbjct: 508 YDKVLYALGIPFVGKVAAKLLAK----------ESKNILKLQTMTEEELQQIEGVGEKMA 557

Query: 610 QAIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++IV+F+QN      ++ L+      +   G      +   + K  + TGTL K  R + 
Sbjct: 558 RSIVDFFQNETKKQLIQNLIDIGLCFTLKDGVEASTEAKIWQGKNFLVTGTLSKYTRAEL 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
           QE + + G    + +++K D +IVG+  GSKLEKA+ LG V I+ EE+FL L ++
Sbjct: 618 QEDIEKSGGTNLSSVTKKLDYLIVGEKAGSKLEKAKALGSVTILTEEEFLALKEK 672


>gi|170761523|ref|YP_001788587.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A3 str. Loch
           Maree]
 gi|254781295|sp|B1L1H3|DNLJ_CLOBM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169408512|gb|ACA56923.1| DNA ligase, NAD-dependent [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 664

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/714 (29%), Positives = 357/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  +  N   IIE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNN--HIIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +  R  L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYN----KAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  +R +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGSEFKNYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIREELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +TRLLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTRLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ +   E   ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGV-AEESLEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+       I+  AD++ +++ +  +  K      F D    NL ++I   
Sbjct: 451 FSEKTAEQLFEK----LDIKSIADLYKIKKEELLTLEK------FKDKKSQNLINAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESIK----------NTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +   +K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|331270357|ref|YP_004396849.1| DNA ligase [Clostridium botulinum BKT015925]
 gi|329126907|gb|AEB76852.1| DNA ligase, NAD-dependent [Clostridium botulinum BKT015925]
          Length = 663

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 203/713 (28%), Positives = 359/713 (50%), Gaps = 58/713 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  ++++  L  E++     YY    P + D +YD        +            P  
Sbjct: 1   MEGKKQQIYKLVDELNKLAYEYYVLDNPSVADKDYDKKYDELVQLEKQ----TGMMLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G  +     K TH     SL K  ++E+++ +  +  +   + +         I 
Sbjct: 57  PTQRVGDMVLAKFEKYTHKGKLWSLGKAQSLEEVKDWHNKNIKAINEYNLKHEDKLPPIK 116

Query: 128 FTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  I   Y+  G  V AA RG G  GED++A  + I T+P  L +N   +IE
Sbjct: 117 YIVTKKFDGLTINCTYDNEGILVTAATRGTGEIGEDITAQAKTIKTLP--LKINNNALIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           V GE  ++K  F   N     + + P  N RN A+G LR LN  +  R  L+ F + +G 
Sbjct: 175 VHGEAIMTKEAFEEYN----KIAQVPLKNLRNGAAGALRNLNIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 +   EML+ ++  G P+++ V+  +T   I      ++ IR+ L YDIDG+V  
Sbjct: 231 NEGKPFETYSEMLKFIKEQGIPMDDYVKTCSTVEEIEEEIKYIEEIRNDLNYDIDGIVIA 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +D+   ++ +G   + P+W +++KF  ++A+T+L+D++  +GR+G +TP A LEPV IGG
Sbjct: 291 IDDMKSRELIGYTVKFPKWALAYKFEAQEATTKLIDVEWNVGRSGRVTPTAILEPVEIGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D I             + +++G  V ++R+ +VIP+++ ++ N    D 
Sbjct: 351 VTVKRATLNNMDDINR-----------KGVKLGSVVFLRRSNDVIPEIMGVVENS-TEDT 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KEIKTPEVCPYCGSEIVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++     F+       I+  +D++ +++ +        N+  FG+    NL D+I K 
Sbjct: 451 FSEKTAGQLFEE----LDIKSISDLYRIKKEELL------NLQRFGEKKAQNLIDAIEKS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + +  L K + + +N               +  LI V  +G
Sbjct: 501 KNCDLPSFIYALGIPNVGKKTSTDLCKKFKTLKNLKSAT----------FDDLISVEDIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           DI+A++I+EF+++   + +++ LL+       + E+   +    K +V TG+L    R +
Sbjct: 551 DIVAESIMEFFKDDTILKSIDELLELGVNPEFQEEEIQENIFNGKTVVVTGSLNSFSRSE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +E +  LGA VS+ +S+KTD +IVG +PGSK EKA +L VKI++E++F  ++
Sbjct: 611 IKEKLQSLGAKVSSSVSKKTDYVIVGKDPGSKYEKAVELNVKIIDEDEFKNMI 663


>gi|187932891|ref|YP_001884644.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B str. Eklund
           17B]
 gi|254781292|sp|B2TIZ7|DNLJ_CLOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187721044|gb|ACD22265.1| DNA ligase, NAD-dependent [Clostridium botulinum B str. Eklund 17B]
          Length = 667

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/711 (28%), Positives = 352/711 (49%), Gaps = 56/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L + ++ +   YY    P + D +YD        +            P  P  +I
Sbjct: 6   ERIKELVEILNKYSYDYYVLDNPSVSDKDYDKEYDELKLLEKE----TGFVLPYSPTLRI 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-----DDNSIFFTLEPK 133
           G  +     K TH     SL+K  ++++++ +  R  +F  +      D   + +    K
Sbjct: 62  GDVVLQGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNIKFVNEMRAQGEDLPDLKYIATKK 121

Query: 134 IDGTMITIRYEKG-KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
            DG  + + Y KG     +A RG+G  GE+V++ ++ I +IP  L  N  ++ EV GE  
Sbjct: 122 FDGLTVNLTYNKGGMLEVSATRGNGEIGENVTSQVKTIKSIPLKLQEND-DLFEVHGEAI 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251
           +++  F   N         P  N RN A+G LR LN  +  R  L+ F + +G       
Sbjct: 181 MTQEAFEKYNASA----DIPLKNLRNGAAGALRNLNIKETARRDLSAFFYDVGYKEGYQF 236

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K   EM+  ++  G P++  ++   +   I      ++ IR  L YDIDGLV  +D+   
Sbjct: 237 KTYLEMMDFIKEKGLPIDEYLKVCTSIDDIKKEIEYIEKIRFDLNYDIDGLVIAIDDIRT 296

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G + P A LEPV + G  +  A
Sbjct: 297 RELLGYTVKYPKWAIAYKFEAQEATTKLLDVEWNVGRSGRIGPTAILEPVELAGVTVKRA 356

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N D IK            + +R+G  V V+R+ +VIP+++  + N    +++    P
Sbjct: 357 TLNNMDDIKR-----------KGVRIGADVFVRRSNDVIPEIMGTLENT-LENSEEICPP 404

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S VV           A + C   L+C  Q ++ + H+ SRDA NI G  ++  
Sbjct: 405 TECPACGSHVV--------LNGAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGFSEKTA 456

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+      +I+  +D++ L++    +  K      FG+    NL ++I K ++  L 
Sbjct: 457 EQLFEK----LNIKSISDLYKLKKEDLINLEK------FGEKKSENLLNAIEKSKDCKLY 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FI++LGI +VG + A+ +   + S               N  +  L+ V  VGDI+AQ 
Sbjct: 507 SFIYALGIPNVGVKTAKDIVNKFKSIDGLK----------NATFEELVSVQDVGDIVAQD 556

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++EF++  + I  ++ LL      I    K V S  ++K +V TGTLQ   R + +  + 
Sbjct: 557 VIEFFKEEKVINTIDELLNLGVNPIFDEVKIVESIFKDKTVVTTGTLQNYSRTEIKTKLE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA VS  +S+KTD +I G++ GSKL KA++LGVKI++EE+F  +L + +
Sbjct: 617 SLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVKIISEEEFEKMLGRES 667


>gi|228469580|ref|ZP_04054573.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3]
 gi|228308930|gb|EEK17605.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3]
          Length = 679

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/722 (29%), Positives = 349/722 (48%), Gaps = 58/722 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++      E+  L + I  H+  YY  + P I D++YDAL +R   +    P+ A   DP
Sbjct: 1   MTPNSTELEIEQLRKTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPEFA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G + N +  +V H  P LSL   +N +++ +   R        D   + +  E
Sbjct: 58  TSPSLRVGRDRNDAFVQVAHEQPMLSLSNTYNYDEIAEICKRTDTLLATDD---VPWVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--LNIPE----II 185
            K DG+ I++ YE+G    A  RGDG  G+DV+  +R I ++P  L      P+     I
Sbjct: 115 MKYDGSSISLIYEEGVLARAVTRGDGTLGDDVTVNVRTIQSVPLRLHSIAGHPDYTRGRI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEV +   +F  LN E  A    P+ANPRNAA+G L+ LN   +  R L    + L 
Sbjct: 175 EVRGEVLLPFKEFERLNGERTAESEAPFANPRNAAAGTLKTLNSRIVAQRRLLCICYYLY 234

Query: 245 KTSEI--FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
              +        YE ++ +  +GF       +++    +  Y +E    R  LPY  DG+
Sbjct: 235 ALDDETRLPDSYYERMKLLEEMGFDTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD  + Q+ LG  A+SPRW  ++K+  + A   LL +D Q+GR+GI+TPVA +EPV 
Sbjct: 295 VLKVDSLTQQRVLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGIVTPVANVEPVL 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I G ++  ATLHNE++IK L           D+   D V +++ GE+IPK+  +  + R 
Sbjct: 355 ISGTVVRRATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVEPSLRR 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P+A+P   P  CP C + +      +       + C    AC  Q + R++H+ +R A +
Sbjct: 404 PEAEPVRLPERCPACGAPL------QQIDGSVGYYCVNSYACPPQIMGRIEHYCTRRAAD 457

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I  +G + +D  F        I    D++ L             +  F + S+ NL  SI
Sbjct: 458 I-NVGPETIDALFDRH----LIENIDDLYKLTASDLA------QLPNFKEKSINNLLASI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + +     R ++ +GIR VG   A++LA+++ S    AQ               L  +P
Sbjct: 507 EQSKGRPFARLLYGIGIRFVGEGTAKTLARHFQSIDRLAQATA----------YELQALP 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTL 658
            VG  IA+ +V F+   RN   +  L +        +    +   S+ +E +++V +G+ 
Sbjct: 557 DVGPKIAEQVVYFFSLERNQQLIAELQRCGVRLEECAEEATDMPQSNRLEGERIVISGSF 616

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
            +  R + ++ + Q G      +S +T  +++G + G SK  KA+QLG+ ++ EE+FL  
Sbjct: 617 TQHSRDEYKQLIEQHGGTNVGSISSRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLAR 676

Query: 718 LQ 719
           L 
Sbjct: 677 LN 678


>gi|170746461|ref|YP_001752721.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831]
 gi|254781368|sp|B1M575|DNLJ_METRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|170652983|gb|ACB22038.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831]
          Length = 810

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/641 (40%), Positives = 375/641 (58%), Gaps = 34/641 (5%)

Query: 1   MKKRQLIPIE-ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           M   +  P++  L+ E+AR E + L   I   D  YYQ   P I D+EYD L+RR + I 
Sbjct: 1   MAATKSEPLDLDLTAEEARAEYARLSDAILEADRLYYQEDAPEISDAEYDRLRRRLEDIE 60

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             FPDLA +   +     +G + +    KV H++P LSL   ++  ++ +F+ R+ RF  
Sbjct: 61  ARFPDLAGTGAAS---TSVGAKPSEKFAKVRHAVPMLSLGNAFDDAEVAEFVARVRRFLG 117

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-S 178
             DD  + FT EPKIDG  +++RY  G+   AA RGDG  GE+V+A  R +  IP VL  
Sbjct: 118 WSDDTPLAFTAEPKIDGLSLSLRYVNGRLDTAATRGDGEVGENVTANARTVQDIPAVLAG 177

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
              PEI EVRGEVY+S  DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L 
Sbjct: 178 AGWPEICEVRGEVYLSHADFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLR 237

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           FF +  G+ S   A+ Q  +L++    G PVN           ++++Y  +++ R+ L Y
Sbjct: 238 FFAYAWGELSAPIAETQTGVLEQFATWGLPVNPRTETFTDTAAMLAHYRRIEADRAGLGY 297

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKVD+ +LQK+LG  +RSPRW ++HKFA ++A+T + DI I +GRTG L P+A+
Sbjct: 298 DIDGVVYKVDDLALQKRLGFVSRSPRWALAHKFAAQEATTVVEDIVINVGRTGSLNPLAK 357

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L PV +GG +++NATLHNE Y+KG+ A G+ +R GRDIRVGD V V RAG+VIPKV+D+ 
Sbjct: 358 LRPVTVGGVVVSNATLHNEGYVKGVGADGEPIRDGRDIRVGDTVTVVRAGDVIPKVMDVD 417

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R  D++P++FP  CP C SR VR +NP+TG+  A  RCTGGL C AQ +ER+KHFVS
Sbjct: 418 LTKRPADSRPYAFPESCPACGSRAVRAINPRTGRPDAVRRCTGGLICPAQGVERMKHFVS 477

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTKIEN- 526
           R+ F+IEG G+  ++  F+    A  +R PAD+F L           RR+  S  +    
Sbjct: 478 RNGFDIEGFGETYIEVLFE----AGLVRQPADLFRLDFEELKAAIVARREALSAERRAES 533

Query: 527 ------------ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
                            D ++ NL  ++  RR + + R +F+LGI  +G   A++LAK +
Sbjct: 534 GTAEPPKKAAKKKGDEDDKAIKNLLAAVEARRAVPMNRLLFALGIPQIGEATAKALAKRF 593

Query: 575 LSYQNFAQEINNIIAHN-NDDWLSLIRVPLVGDIIAQAIVE 614
                    I    A     DW+ L  VP VG      +++
Sbjct: 594 ADMPTLIAAIREAAAAQPGPDWVELTAVPRVGGTTRDRLLD 634



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 2/155 (1%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVE 626
            +L  +Y         I    A    D   +      +G +   A++ F+  P N  AV 
Sbjct: 657 ENLLAHYGDVDAVRAAIAQAAAQRPGDAYRVFADDGEIGPVATDALLLFFSEPHNADAVT 716

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           ALL  V+          +S    K +VFTG L+K+ R++A+    +LGA VS  +S KTD
Sbjct: 717 ALLDAVAVQ-PMERAAAASTFAGKTVVFTGALEKMTRNEAKAVAERLGAKVSGSVSAKTD 775

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +++ G   GSKL+ AQ+ GV++++E+ +L ++ Q 
Sbjct: 776 LVVAGPGAGSKLKDAQKHGVRVVSEDDWLAMVAQG 810


>gi|237753058|ref|ZP_04583538.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375325|gb|EEO25416.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 666

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/707 (31%), Positives = 351/707 (49%), Gaps = 65/707 (9%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
           + ++     YY    PI  D EYD L  +  A     P        + P  ++G ++   
Sbjct: 11  KTLNLWAKHYYVLDDPIASDEEYDLLYHKVLAYEAQNPQFIAQ---DSPTQRVGDKVLEG 67

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
             K TH     SLE ++N  + +++I R  R      D  + F++ PK DG  + + YE 
Sbjct: 68  FNKHTHLKRMWSLEDVFNETETQEWILRAKRGLGLLSDAPLIFSVSPKFDGASLNLLYED 127

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G    AA RGD   GE+V+   R IP+IP  LS+     IE+RGE  I K+DF ALN E 
Sbjct: 128 GILKCAATRGDAFIGENVTQNARTIPSIP--LSIAYKGRIEIRGECVIGKDDFEALNLER 185

Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF------------AK 252
              G   +ANPRN A+G LR+L+     +R L F   G+G+                   
Sbjct: 186 QNKGETLFANPRNCAAGSLRQLDSKITASRKLQFIPWGVGECDTKDFMDFASKEKTRNPN 245

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             + +++ +  LGF           +  I + Y  +   R      +DG+V  VD F LQ
Sbjct: 246 SFFALMEGIYALGFQKPPFTELCTNYDSIHTAYQTLLKAREDYAIMLDGMVLCVDAFDLQ 305

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   ++PR+  ++KF   +   ++L I +Q+GRTG++TPVA LEPV + GA I+ AT
Sbjct: 306 EKLGFTIKAPRFACAYKFPALEKRAKILSITLQVGRTGVITPVAELEPVLLEGAKISRAT 365

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I             +DI++ D V++ R+G+VIPK++  +   R     P + P+
Sbjct: 366 LHNFDEIHK-----------KDIQINDFVVLIRSGDVIPKIIKSLPKLRDGTQYPCATPT 414

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CPIC S ++ +            +C   L C A+    + HF S+ A NI+GLG++ ++
Sbjct: 415 QCPICNSTLLIEE--------KLIKCQN-LNCPARVKNSITHFASKKALNIDGLGEKIVE 465

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F+ +     I+   DIFTL+              GF +  + NL ++I K + + L R
Sbjct: 466 LLFECKK----IQSIEDIFTLKANDLEGLE------GFKEKKINNLIEAILKVKGVELWR 515

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI +LGI H+G   ++ LA  Y             +      +   I +   G  +A+++
Sbjct: 516 FINALGIEHIGEGASKKLANAYG------------LEFYKKSYADFIALDGFGGEMAESL 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           VEF     N   +  LL+ ++P+   + + + S+I  K  V TGTL K +R + QE +  
Sbjct: 564 VEF--CTVNQTRLLRLLEYIAPTC--NTQVLESKISGKTFVITGTLPK-KREEYQELLES 618

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LGA VS  +S+KTD ++ G++ GSKL KA++LGVKI+N E+   LL+
Sbjct: 619 LGAKVSGSVSKKTDFLLCGEDAGSKLTKAKELGVKIINVEELQALLE 665


>gi|251777669|ref|ZP_04820589.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243081984|gb|EES47874.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 667

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/711 (28%), Positives = 353/711 (49%), Gaps = 56/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L + ++ +   YY    P + D +YD        +            P  P  +I
Sbjct: 6   ERIKELVEILNKYSYDYYVLDNPSVSDKDYDKKYDELKLLEKE----TGFVLPYSPTLRI 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-----DDNSIFFTLEPK 133
           G  +     K TH     SL+K  ++++++ +  R  +F  +      D   + +    K
Sbjct: 62  GDIVLDGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNVKFVNEMRAQGEDLPDLKYIATKK 121

Query: 134 IDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
            DG  + + Y E+G    +A RG+G  GE+V+A ++ I +IP  L  N  ++ EV GE  
Sbjct: 122 FDGLTVNLTYNEEGMLEVSATRGNGEIGENVTAQVKTIKSIPLKLQEN-HDLFEVHGEAI 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251
           +++  F   N         P  N RN A+G LR LN  +  R  L+ F + +G       
Sbjct: 181 MTQEAFEKYNSSA----DSPLKNLRNGAAGALRNLNVKETARRDLSAFFYDVGYKEGYQF 236

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K   EM+  ++  G PV++ ++   +   I +  + ++ IR  L YDIDGLV  +D+   
Sbjct: 237 KTYLEMMDFIKEKGLPVDDYLKVCVSIEDIKNEIDYIEKIRFDLNYDIDGLVIAIDDIKT 296

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G + P A LEPV + G  +  A
Sbjct: 297 RELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRIGPTAILEPVELAGVTVKRA 356

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N D IK            + +R+G  V ++R+ +VIP+++  + N    +++    P
Sbjct: 357 TLNNMDDIKR-----------KGVRIGADVFIRRSNDVIPEIMGTLENT-LENSEEIFPP 404

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S VV           A + C   L+C  Q ++ + H+ SRDA NI G  ++  
Sbjct: 405 IECPACGSHVV--------LNGAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGFSEKTA 456

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+      +I+  +D++ L++    +  K      FGD    NL +++   +   L 
Sbjct: 457 EQLFEK----LNIKSISDLYKLKKEDLINLEK------FGDKKAENLLNAVEGSKECKLY 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FI++LGI +VG + A+ +   + S               N  +  L+ V  VGDI+A+ 
Sbjct: 507 SFIYALGIPNVGVKTAKDIVNKFKSIDGLK----------NATFEELVSVQDVGDIVAKD 556

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           I+EF++  + I  ++ LL      I    K V S  ++K +V TGTLQ   R + +  + 
Sbjct: 557 IIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVATGTLQNYSRTEIKTKLE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA VS  +S+KTD +I G++ GSKL KA++LGV++++EE+F  +L + +
Sbjct: 617 SLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVEVISEEEFEKMLGRES 667


>gi|149195296|ref|ZP_01872384.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2]
 gi|149134560|gb|EDM23048.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2]
          Length = 682

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/731 (29%), Positives = 359/731 (49%), Gaps = 77/731 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E     + +      YY    P++ D EYD L +  +      PD     D   P  +I
Sbjct: 6   EEYKKAVETLKKWAYYYYVLDNPLVTDEEYDKLYKEVEEYEKNHPDEV---DKTSPTQRI 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G  +     K  H     S+E +++  +   ++ R+ R      +++  F +EPK DG  
Sbjct: 63  GDVVLDEFKKAKHITKMWSMEDVFDKNEFIDWVNRVKRAIG---NDNFSFYIEPKFDGAS 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y+ G+ + A  RGDG  GEDV+   + I TIP  L++    +IE+RGEV I K DF
Sbjct: 120 LNLVYKNGELIRAETRGDGEIGEDVTLNAKTIKTIP--LTIKYKGLIEIRGEVVIKKQDF 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF------- 250
             LN+E I  G   +ANPRNAA+G LR+L+P     R L F+  G+G   E+        
Sbjct: 178 DKLNEERIKKGEPTFANPRNAAAGSLRQLDPKITANRPLLFYPWGVGYPIEVLISDEVSK 237

Query: 251 -------------AKGQYEMLQKMRCLGFPVNNGVRQAN--TFHGIVSYYNEMKSIRSTL 295
                         K    ++  +  LGF       +        ++  YNE   IR  +
Sbjct: 238 EEYERDKKEFIEKFKTYKNIMDFVYSLGFKEPPKRGECKASDIECVLKKYNEFVEIRDEI 297

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           P  +DG+V KV+E +L + LG  A+ PRWM+++KF   +  T + D+ +Q+GRTG+LTPV
Sbjct: 298 PVMLDGMVVKVNELNLLENLGYTAKYPRWMVAYKFPAIEKETIIEDVIVQVGRTGVLTPV 357

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A L+P+ IGG ++  ATLHN D I+ +           DIR+GDRV+V R+G+VIPK+  
Sbjct: 358 AILKPIEIGGVIVERATLHNFDEIERM-----------DIRIGDRVIVIRSGDVIPKITK 406

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           ++ ++R  + +    P+ CP+C S V+           A  +C   L+C A+ +  + + 
Sbjct: 407 VLYHKRTGNEKKIPRPTHCPVCGSEVL--------DEGAIIKCQN-LSCPARVVNTIIYA 457

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            S++  +IEGLG+      ++       ++   D+F L+          E +  F     
Sbjct: 458 ASKNCLDIEGLGESVAKLLYEK----GLVKDIRDLFKLKVEDL------EKLPLFARKKA 507

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL ++I+K + I   RF+ +LGI H+G   ++ + + +             +       
Sbjct: 508 ENLVNAISKVKGIECWRFVNALGIEHIGEVASKKICEKFG------------VEFYKHSP 555

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
                +   G  + ++I E+     N   +E L+K + P+  + E  V+S    K +V T
Sbjct: 556 EEFYELEGFGPEMVKSIAEY--VKVNKDKIEELIKLIEPTNPKKE-VVNSPFTGKTVVLT 612

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G++ K  R + +E +  LGA V+  +S+KTD +IVG++PGSK EKA++LG+ I+ EE   
Sbjct: 613 GSMSK-SRSEIKEMLENLGAHVTNSVSKKTDYVIVGEDPGSKFEKAKKLGITILKEEDMW 671

Query: 716 FLLQQYNTTLR 726
            ++   N   +
Sbjct: 672 NMIGDGNGDKK 682


>gi|188587790|ref|YP_001919828.1| NAD-dependent DNA ligase LigA [Clostridium botulinum E3 str. Alaska
           E43]
 gi|254781291|sp|B2UZ23|DNLJ_CLOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188498071|gb|ACD51207.1| DNA ligase, NAD-dependent [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 667

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/711 (28%), Positives = 355/711 (49%), Gaps = 56/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L + ++ +   YY    P + D +YD        +            P  P  +I
Sbjct: 6   ERIKELVEILNKYSYDYYVLDNPSVSDKDYDKKYDELKLLEKE----TGVVLPYSPTLRI 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-----QKKDDNSIFFTLEPK 133
           G  +     K TH     SL+K  ++++++ +  R  +F      Q +D   + +    K
Sbjct: 62  GDIVLDGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNIKFVNDMRAQGEDLPDLKYIATKK 121

Query: 134 IDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
            DG  + + Y E+G    +A RG+G  GE+V+A ++ I +IP  L  N  ++ EV GE  
Sbjct: 122 FDGLTVNLTYNEEGMLEVSATRGNGEIGENVTAQVKTIKSIPLKLQEN-HDLFEVHGEAI 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251
           +++  F   N         P  N RN A+G LR LN  +  R  L+ F + +G       
Sbjct: 181 MTQEAFEKYNSSA----DSPLKNLRNGAAGALRNLNVKETARRDLSAFFYDVGYKEGYQF 236

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K   EM+  ++  G PV++ ++   +   I +  + ++ IR  L YDIDGLV  +D+   
Sbjct: 237 KTYLEMMDFIKEKGLPVDDYLKVCVSIEDIKNEIDYIEKIRFDLNYDIDGLVIAIDDIRT 296

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ LG   + P+W I++KF  ++A+T+L+D++  +GR+G + P A LEPV + G  +  A
Sbjct: 297 RELLGYTVKFPKWAIAYKFEAQEATTKLVDVEWNVGRSGRIGPTAILEPVELAGVTVKRA 356

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N D IK            + +R+G  V ++R+ +VIP+++  + N    +++    P
Sbjct: 357 TLNNMDDIKR-----------KGVRIGADVFIRRSNDVIPEIMGTLENT-LENSEEIFPP 404

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S VV           A + C   L+C  Q ++ + H+ SRDA NI G  ++  
Sbjct: 405 TECPACGSHVV--------LNGAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGFSEKTA 456

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+      +I+  +D++ L++    +  K      FGD    NL +++   +   L 
Sbjct: 457 EQLFEK----LNIKSISDLYKLKKEDLINLEK------FGDKKAENLLNAVEGSKECKLY 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FI++LGI +VG + A+ +   + S               N  +  L+ V  VGDI+AQ 
Sbjct: 507 SFIYALGIPNVGVKTAKDIVNKFKSIDGLK----------NATFEELVSVQDVGDIVAQD 556

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           I+EF++  + I  ++ LL      I    K V S  ++K +V TGTLQ   R + +  + 
Sbjct: 557 IIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVATGTLQNYSRTEIKTKLE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA VS  +S+KTD +I G++ GSKL KA++LGV++++EE+F  +L + +
Sbjct: 617 SLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVEVISEEEFEKMLGRES 667


>gi|88607345|ref|YP_504763.1| DNA ligase, NAD-dependent [Anaplasma phagocytophilum HZ]
 gi|123736456|sp|Q2GLI8|DNLJ_ANAPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|88598408|gb|ABD43878.1| DNA ligase, NAD-dependent [Anaplasma phagocytophilum HZ]
          Length = 677

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/717 (36%), Positives = 409/717 (57%), Gaps = 45/717 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S   +R+ L+ L  ++  HD  Y+++  P I D++YDAL +    +   FP+L+   D 
Sbjct: 1   MSDNDSRRRLADLNAQLKLHDVLYHEHDAPEISDAQYDALVQEKRELLEKFPELSAYNDY 60

Query: 72  NGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            G    IG   ++  L K+ H  P LSLE  + I+D+ KFI+R+ R      + SI    
Sbjct: 61  EGV---IGALTVDARLPKIAHREPMLSLENSFTIQDVEKFISRVKRSLNMDPEVSITIAC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPKIDG      YEKG  +  A RG+GH GED++   + I  +P  ++ N PE++EVRGE
Sbjct: 118 EPKIDGLSFAALYEKGSLIRVATRGNGHLGEDITNTAKVIRKLPHKIA-NAPEVLEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           +Y+  +DF  L D         +ANPRNAA+G +R+LNP     R L +  + +  ++  
Sbjct: 177 IYMHHSDFEKLKDVCN------FANPRNAAAGSIRQLNPKIAEERNLRYVAYCIVNSA-- 228

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q  +L+++   GF  +  V  A+     +S++  M + RSTL YDIDG+VYKV++ 
Sbjct: 229 -LASQEAILKQLAEWGFCTHTEVLFADNMDDALSFHTRMYNTRSTLGYDIDGIVYKVNDT 287

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQK LG  ++ PRW  +HKF   +A T+L DI +Q+GRTG++TP+A LEP+NIGG L++
Sbjct: 288 HLQKLLGSTSKYPRWATAHKFPSTEAITKLRDISVQVGRTGVITPIAELEPINIGGTLVS 347

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP-- 427
            A+LHN + I             +DIR+GD V+VKRAGEVIP+VV +    R   A P  
Sbjct: 348 RASLHNLNEIAR-----------KDIRIGDSVIVKRAGEVIPQVVGVDHTARCNSAVPEE 396

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FPS CP C S + R           A RCT  L+C AQ LER+KHFVSRD  NI GLG
Sbjct: 397 YVFPSHCPSCGSTLSRAPGE------VAMRCTAELSCQAQVLERVKHFVSRDGLNIVGLG 450

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++FF      A  I   ADIF+L  R++ S   +    G+G+ S+  L ++IN    
Sbjct: 451 EKQIEFF----CNASYISNVADIFSL--REKISHMNLSAEHGWGEKSIALLINAINASTT 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           + L  FIF+LGIR +G   A+ +A++Y SY  + + + ++    + D      +  +G  
Sbjct: 505 VKLSNFIFALGIRFIGKGAAKLIAEHYRSYSAWVRAMTSLANGEDPD-----NIHGIGLK 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
             +++  F+ +  N+  ++ L ++++          +S I  K +VFTG L+ + R++A 
Sbjct: 560 SIESLRAFFSSEDNLRVLQTLEEKLNILNEIANTETASPISGKTIVFTGVLEDMSRNEAA 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +Y   LGA V   ++ KTDI++ G N GSKL+ A++LG+++MNE ++  LL+  + +
Sbjct: 620 KYAETLGAKVGNTVTTKTDILVAGSNSGSKLDTARKLGIQVMNESEWKDLLKTVSNS 676


>gi|319943831|ref|ZP_08018112.1| DNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319743064|gb|EFV95470.1| DNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 779

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/784 (30%), Positives = 366/784 (46%), Gaps = 105/784 (13%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R  + +L  E+  H+  YY+   P + DS YD L      +   +P L     P+ 
Sbjct: 20  PADIRARVQTLRAELLAHNRAYYEEDAPTVEDSVYDGLFLELQQLEARWPALL---TPDS 76

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G   +     VTH +P  SL   ++  D+  F  R+       +D    F+  PK
Sbjct: 77  PTQRVGSAPSAGFGTVTHRVPMRSLSNAFSEADVLAFDRRLKSLLGVTED--FAFSATPK 134

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG   T+RYE G+ V  A RGDG +GE+++A +R +  +P  LS   PE++EVRGEV +
Sbjct: 135 LDGLAATLRYEHGRLVQGATRGDGVTGENITANLRTVRGVPAQLSGPAPEVLEVRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-- 250
            K DFLALN    A G K +ANPRNAA+G LR+L+     +R L F+ +G+G+ S+    
Sbjct: 195 LKEDFLALNRAQEARGDKLFANPRNAAAGSLRQLDARVTASRPLTFYAYGIGEVSDPDQV 254

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q+ ML  +  LGF    G  +      ++ YY    S+R+TLPY IDG+VY++D+  
Sbjct: 255 PASQHGMLVWLGTLGFLPPPGAERVQGVSALLDYYRHTGSVRATLPYAIDGVVYQLDDRH 314

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+Q G  AR+PR+ ++HK+A ++A T L DI +Q+GRTG+LTPVARLEPV +GG  ++N
Sbjct: 315 LQEQAGFVARAPRFALAHKYAAEEAVTTLQDIFVQVGRTGVLTPVARLEPVFVGGVNVSN 374

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED ++            + + +GDRV+V+RAG+VIP+VV +++++R  DA+ F  
Sbjct: 375 ATLHNEDEVRR-----------KHLLIGDRVIVRRAGDVIPEVVGVVLDQRPADAREFRM 423

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S V R  +       A  RC GGL CSAQ+   L HF  R A +I+GLG   
Sbjct: 424 PSQCPVCGSAVQRLPSE------ANWRCVGGLFCSAQRKRALWHFAHRRAMDIDGLGDVL 477

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN---------ILGFGDVSVTNLYDS 541
           ++           +  PAD++ L      +  ++           I G    S+     +
Sbjct: 478 VEQLVD----GNLVHEPADLYRLDAATLQALPRMGEKSAANLLAAIDGSRHPSLERFLFA 533

Query: 542 I-------NKRR--------------------------------------NISLERFIFS 556
           +          R                                         L   +  
Sbjct: 534 LGIRAVGEEAARVLARAFGDLEGFLAADWATLLEEKAATLKENERRRSRGERPLPVPLDG 593

Query: 557 LGIRHVGAEIARSL-AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD-IIAQAIVE 614
           +G   +G+  A    A    S  +                 +   VP  G   +A A  +
Sbjct: 594 IGPEIIGSVSAFLGEAHNRDSIAHLRAVGVEPRPVQGARSAARPGVPSFGQGELALAAQD 653

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS--------------------SEIENKKLVF 654
                 +   V+A   +   S G  ++                            + +V 
Sbjct: 654 GQPRGADPTTVDASAVDGVASPGVMDETSGAGEAVPPGLDAATWAAAVARQPFAGQSIVV 713

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL+ + R +A+  +  LG   +  +S +T  ++ G+N GSKL KA+ LG+ ++ E  F
Sbjct: 714 TGTLEHLSRDQAEAMIRALGGKPAGSVSGRTAFVVAGENAGSKLTKARSLGISVLAEADF 773

Query: 715 LFLL 718
              +
Sbjct: 774 FNKI 777


>gi|157737313|ref|YP_001489996.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri RM4018]
 gi|166215390|sp|A8ETQ3|DNLJ_ARCB4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157699167|gb|ABV67327.1| DNA ligase [Arcobacter butzleri RM4018]
          Length = 648

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/707 (30%), Positives = 361/707 (51%), Gaps = 61/707 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+    +  L        + YY +  PI  D EYD L R C A     P L+    P
Sbjct: 1   MTKEEYDLNIEKLIS----WANAYYVFDNPIATDEEYDKLARLCLAYEQENPKLSH---P 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG +     K +H     S E ++N ++L  +I R  +      + ++ F  +
Sbjct: 54  NSPNKRVGGIVLDGFIKASHLSRMWSQEDVFNTQELEDWIKRASKV-----NTNLEFFCQ 108

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  + + YE G    A  RGDG  GEDV+   + I +IP  L +    +IE+RGEV
Sbjct: 109 PKFDGASLNLIYENGILKQAITRGDGTVGEDVTNNAKTIFSIP--LEIEEKSLIEIRGEV 166

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I K DF  +N E    G + +ANPRNAA+G LR+L+      R L F V G+G+ S + 
Sbjct: 167 VIKKADFEKINIERAKNGEQLFANPRNAAAGSLRQLDSNITAKRKLFFNVWGIGQNS-LE 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   ++++ +  LGF        A+    I S Y++  SIR+     +DG+V K+D+  
Sbjct: 226 HKKYSQIMEYIYSLGFERPQMQTLASNIEEIESLYHKFISIRNDFEMMLDGMVIKIDDIE 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG   + PRW  ++KF   + +T+L  I +Q+GRTGI+TPVA +EP  I G+ ++ 
Sbjct: 286 TQEELGYTVKFPRWSCAYKFPAVEKTTKLKAITLQVGRTGIITPVAEVEPTLIDGSTVSR 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           D+++ D V++ ++G++IPK+  +    R  D    S 
Sbjct: 346 ATLHNFDEIERL-----------DLKINDEVIIIKSGDIIPKITKVFFERRKGDEITISR 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S V+              +C   L C ++ +  + +F S++  NI+GLG + 
Sbjct: 395 PTSCPTCNSEVL--------DEGTMIKCQN-LDCPSRVVNSIIYFASKNCMNIDGLGNKI 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F  +     I    DI++L+          +++ GF +  + NL ++I   +   L
Sbjct: 446 VEQLFNEKK----IYDILDIYSLKYEDL------QDLEGFKEKKINNLLNAIENTKGSEL 495

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R I +LGI H+G   ++ +   +             +   N D+ SLI +   G+ +A 
Sbjct: 496 HRVINALGIEHIGEVASKQICLEFG------------LDVINKDYDSLIALDGFGEQMAN 543

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + +EF +   N   VE L+  ++P +   ++   +  +NK +V TGT+ K  R + +  +
Sbjct: 544 SFIEFMRV--NKNLVEKLISIINPKVEIKKEVSENPFKNKTVVITGTMSK-SRGEIKSML 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             LGA VS+ +S+KTD +I G++ GSK +KA +LGVK++ EE+   L
Sbjct: 601 EDLGAKVSSSVSKKTDYVIFGEDAGSKYDKAIELGVKLLTEEEMNSL 647


>gi|34558095|ref|NP_907910.1| NAD-dependent DNA ligase LigA [Wolinella succinogenes DSM 1740]
 gi|81653397|sp|Q7M8A0|DNLJ_WOLSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|34483813|emb|CAE10810.1| DNA LIGASE POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+] [Wolinella
           succinogenes]
          Length = 650

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/709 (33%), Positives = 366/709 (51%), Gaps = 61/709 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +Q  + +  L    +     YY    P+  D EYD L     A     P+      P
Sbjct: 1   MNPDQYSQAIERL----NAWAHAYYVLDAPLATDEEYDQLYHEALAFERQNPERIH---P 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  +IGG       K +H     SLE +++  +L+ +  R+Y+ +         F  +
Sbjct: 54  ASPTQRIGGAPLEGFQKASHLERMWSLEDVFDFGELKSWAERLYKQFPH-----ATFVCD 108

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  + + YE+G+ V AA RGDG  GEDV+   R IP+IP  LS+ + E IE+RGEV
Sbjct: 109 PKFDGASLNLLYEEGRLVRAATRGDGLIGEDVTQNARTIPSIP--LSIPLLERIEIRGEV 166

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I K DF  L +E +     P+ANPRNAA+G LR+L+P     R L F   G+G      
Sbjct: 167 VIPKEDFEKLQEERLRENESPFANPRNAAAGSLRQLDPAITAKRKLRFIPWGVGAHP-FK 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E+++ +   GF  +    + +  H I   Y  + S RST P  +DG+V +VDE +
Sbjct: 226 TGSFFEIMKSLESYGFIRSPERTRCHNIHEIERVYALLVSERSTHPVMLDGMVVRVDEIA 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG   ++PR+  ++KF   +   RLL I +Q+GR+G++TPVA LEPV I GA+I+ 
Sbjct: 286 YQRELGYTIKAPRFACAYKFPAIEKKARLLSITLQVGRSGVVTPVANLEPVEIEGAMISR 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D IK L           D+R GD V + R+G+VIPK++    + R  + +P S 
Sbjct: 346 ATLHNFDEIKRL-----------DVREGDWVSLIRSGDVIPKIIQPFAHLRSGEEKPLSR 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S ++ +            +C   L+C A+    L HF S+ A NI+GLG++ 
Sbjct: 395 PTHCPECGSELLVEE--------VLIKCQN-LSCPARIKNSLIHFASKKALNIDGLGEKI 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F+    A  I+   D+F+L +    S        GF +    NL D+I   R   L
Sbjct: 446 IEQLFE----AGLIKEFEDLFSLTKESLLSLE------GFKEKKAQNLLDAIQGVRGCDL 495

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI +LGI H+G   A+ L+  +             +A +  +  ++I +   G+ +AQ
Sbjct: 496 WRFINALGIEHIGEGAAKKLSHAFG------------LAFHLQNHEAIIGLEGFGEEMAQ 543

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +++EF +   N   +E LL  + P          S I  K  V TGTL    R    E +
Sbjct: 544 SLLEFCRV--NHERIEHLLGLIEPLAPIQLTPQDSPIAGKSFVITGTLSAP-REHFVELL 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           T LGA V + +S+K+D ++ G++ GSKLEKA++LGV+ +NEE+   +L+
Sbjct: 601 TSLGAKVVSSVSKKSDFLLYGESAGSKLEKARELGVRCVNEEELGEILE 649


>gi|251799680|ref|YP_003014411.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. JDR-2]
 gi|247547306|gb|ACT04325.1| DNA ligase, NAD-dependent [Paenibacillus sp. JDR-2]
          Length = 677

 Score =  645 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 202/732 (27%), Positives = 332/732 (45%), Gaps = 68/732 (9%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M+ +   P E L+       +  L  EIS H+  YY   +P I D++YD L     A+  
Sbjct: 1   MENQTATP-EQLT------RMQELAAEISAHNYSYYTLDQPTINDADYDKLYDELVALEA 53

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-- 118
                     P+ P  ++GGE+        H     SL+K  + EDL  +  R+ +    
Sbjct: 54  D----TGVVLPDSPTQRVGGELLKGFEPHRHRARLWSLDKAQDTEDLLAWNQRVLKAIND 109

Query: 119 ------QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172
                 +++      + +E K DG  + + YE G+ + A+ RG+G  GE + A ++ I +
Sbjct: 110 YNAKHPEEEPLPQPNYVIELKFDGLTLNLTYENGQLIQASTRGNGTVGEGILAQVKTIRS 169

Query: 173 IPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI 232
           +P  +      IIEV+GE  ++ +     N         P  N RNAA+G LR LNP   
Sbjct: 170 VPLTIPFGD-GIIEVQGEGIMNLSVLERYNQTAAE----PLKNARNAAAGALRNLNPKTT 224

Query: 233 T-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
             R LN F + +G    +      EM Q ++   F VN      N+   +      +   
Sbjct: 225 AERKLNAFFYNVGFAEGVSFSNHREMQQFLKDNLFKVNPYALYLNSIEEVQEELLRIAEK 284

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R  L + IDG V K+ +   ++ LG   + PRW ++ KF  ++A+T L  +  ++GRTG 
Sbjct: 285 RLELDFLIDGAVVKLTDMRTREALGYTDKFPRWAVAFKFEAEEAATVLESVSWEVGRTGK 344

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVAR+E V + G  + N TL+N   I+  +             +G  V ++R+ +VIP
Sbjct: 345 ITPVARVEAVELAGVTVQNCTLNNIGDIERKNLKHA---------LGTLVSIRRSNDVIP 395

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +++  +  E     Q   FP+ CP C + + +          A   C   L C  Q + R
Sbjct: 396 EILGKVDEE---PGQEIVFPAVCPACGTELEQR--------GAHLFCNNKLGCRPQIIGR 444

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           + HF SRDA +IE       +  +   D    +  PAD++ L         +      FG
Sbjct: 445 ITHFSSRDAMDIEAFSVMTAEQLYADCD----VHDPADLYALGYDDLIKLDR------FG 494

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           D     L D+I K ++  L  F+F+LGI + G    + LA +Y S           +   
Sbjct: 495 DKKARKLLDAIEKSKDRDLAAFLFALGIPNTGKATTKMLADHYGSLDGVMSATAEEL--- 551

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIEN 649
                  + +  VG I+A +IV ++ +P    ++  + +    +       V   S    
Sbjct: 552 -------VGLQDVGAIVADSIVNYFADPIIAASIARMREHGVKAEAEQPVVVRQDSIFSG 604

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K +V TGTL K+ R +A + +   GA VS  +S+KTD +I G++ GSKL KA+ LG+ ++
Sbjct: 605 KTVVLTGTLSKMSRDEAAKKLEAFGAKVSGSVSKKTDFVIAGESAGSKLTKARDLGITVI 664

Query: 710 -NEEQFLFLLQQ 720
            +E++ L LL +
Sbjct: 665 EDEDELLRLLGE 676


>gi|148272584|ref|YP_001222145.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166215575|sp|A5CQU5|DNLJ_CLAM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147830514|emb|CAN01449.1| NAD-dependant DNA ligase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 853

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/782 (27%), Positives = 351/782 (44%), Gaps = 99/782 (12%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            +E A   + +L  EI  H D YY      + D+EYDAL    +A+  A P L      +
Sbjct: 22  DLEAASARVDALRTEIERHRDEYYGADASTLSDAEYDALVHELEALEEAHPTL---RSQD 78

Query: 73  GPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P   +GG    +    VTH+   LSL+ +++ E+L ++  ++ R         + +  E
Sbjct: 79  SPTQTVGGRAETTLFAPVTHAERMLSLDNVFSEEELAEWAAKVERDAGS---GRVRYLSE 135

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
            KIDG  I +RYE G  V AA RGDG  GEDV+  +  + T+P  L     P ++EVRGE
Sbjct: 136 LKIDGLAINLRYEHGVLVTAATRGDGVVGEDVTQNVLTMGTVPERLMGSGHPPLVEVRGE 195

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP----------TDITRYLNFFV 240
           ++    +F  LN   + VG + +ANPRNAA+G LR+                 R L   V
Sbjct: 196 IFFPVAEFDELNARQLEVGERVFANPRNAAAGSLRQKEEGKSPARLELMRARIRRLRMLV 255

Query: 241 HGLGK------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           HG+G        S+     Q E+   +   G P++   R  +    +  +     + R+ 
Sbjct: 256 HGIGAWPVRELASDAHVSAQSEVYGLLAGWGLPISTHFRVFDDISEVTEFVRRHGAHRAE 315

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + IDG+V KVD+  L ++LG  +R+PRW  ++K+  ++ +T LLDI + +GRTG  TP
Sbjct: 316 VEHQIDGIVVKVDDLGLHEELGATSRAPRWATAYKYPPEEVNTTLLDIVVSVGRTGRATP 375

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A +E V + G+ +  ATLHN+  +K            + + +GD V++++AG+VIP+V+
Sbjct: 376 FAVMEKVEVAGSEVRQATLHNQQVVKA-----------KGVLIGDTVVLRKAGDVIPEVL 424

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +V  R    + F  P+ CP CQ+ +         +     RC    +C AQ   R++H
Sbjct: 425 GPVVELRDGTEREFVMPTLCPECQTPL-----RPAKEGDIDLRCPNARSCPAQVRGRVEH 479

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTLQ-----------RRQQTSTT 522
             SR A +IEGLG+       +  +P    +   A +F L            R  +T   
Sbjct: 480 VASRGALDIEGLGEVAAAALTQPLEPEDPPLETEAGLFELTMADLVPITVVVRDAETGMV 539

Query: 523 KIENILGFGD-------------------------------VSVTNLYDSINKRRNISLE 551
           K++   G                                   S   L ++++K +   L 
Sbjct: 540 KVDEKTGEAKRVTPFRRRRAPKRDGVFDPAAPWGDEDSVPSKSAEVLLENLDKAKTQDLW 599

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   AR+LA ++ S           +A           V  VG IIA A
Sbjct: 600 RILVALSIRHVGPVAARALAGWFGSLDAIRSASREELAA----------VDGVGGIIADA 649

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIG------RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++++++   +   V+   K                      +    +V TG+L+   R  
Sbjct: 650 LLDWFEVDWHREIVDRWRKAGVVMEVPGHPGPGAAAAAGGVLAGLTVVATGSLEGYTREG 709

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           A E +   G    + +S+KT  +  G   GSKL KA+ LGV+I++  +F  L++Q    +
Sbjct: 710 ALEAIMAAGGKAGSSVSKKTHYVAAGPGAGSKLGKAEALGVRIIDAAEFRLLVEQGPDAI 769

Query: 726 RI 727
            +
Sbjct: 770 AL 771


>gi|302382738|ref|YP_003818561.1| DNA ligase, NAD-dependent [Brevundimonas subvibrioides ATCC 15264]
 gi|302193366|gb|ADL00938.1| DNA ligase, NAD-dependent [Brevundimonas subvibrioides ATCC 15264]
          Length = 777

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/756 (34%), Positives = 373/756 (49%), Gaps = 100/756 (13%)

Query: 41  PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100
           P + D++YDA+K R  AI   FP L RS   + P  K+G  ++    +V H +P LSL+ 
Sbjct: 42  PTVSDADYDAMKARNLAIETRFPALVRS---DSPSLKVGAPVSTQFTEVRHGVPMLSLDN 98

Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160
            +   D+  F+ RI RF     D  + FT EPKIDG    +RYE G  V  A RGDG +G
Sbjct: 99  AFEAADVTDFVARIRRFLNLPADEVVAFTAEPKIDGLSANLRYEDGVLVQGATRGDGRAG 158

Query: 161 EDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNA 219
           ED++A ++ I  IP  L     P  IEVRGEVY   + F A N E  A GR+ YANPRN 
Sbjct: 159 EDITANLKTIADIPHRLNGKGWPARIEVRGEVYAPNDAFAAFNAEAEAAGRRTYANPRNF 218

Query: 220 ASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278
           A+G LR+++PT    R L FF +  G+TSE FA+ Q   L+     GFPVN    +    
Sbjct: 219 AAGSLRQIDPTVTAARPLRFFAYAWGETSEPFAETQAGALEAFEAWGFPVNPRSVRVEGS 278

Query: 279 HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTR 338
            G++  Y  +++ R+ L YDIDG+VYKVD    Q +LG  +RSPRW I+HKF  +QA+T 
Sbjct: 279 DGLIDVYRGLETDRAGLGYDIDGVVYKVDRLDWQTRLGFVSRSPRWAIAHKFPAQQATTV 338

Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398
           L  IDIQ+GRTG LTPVARL PV +GG ++ NATLHNED I             +D+R+G
Sbjct: 339 LEGIDIQVGRTGSLTPVARLAPVTVGGVVVRNATLHNEDEIAR-----------KDVRIG 387

Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           D V+++RAG+VIP++V +++++R  DA P+ FP+ CP+C S  VR+ +          RC
Sbjct: 388 DTVVLQRAGDVIPQIVSVVLDKRPADALPYVFPTHCPVCGSEAVREGD------DVRRRC 441

Query: 459 TGGLACSAQQLERLKHFVSRDAFNI----------------------------------- 483
           TGGL CSAQ +ERLKHFVSR AF+I                                   
Sbjct: 442 TGGLICSAQLIERLKHFVSRRAFDIEGLGEKQLSAFHDRGWIHEPADIFRLARDADKLDA 501

Query: 484 ----EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
               +G G+  +       D    I +   IF L  R          +        +   
Sbjct: 502 LRAEDGYGETSVRNLVAGIDARRVISLERLIFGLGIR-DIGDQTSLLLARHFGDWASFHA 560

Query: 540 DSINKRRNISLERFIF-----------------------------------SLGIRHVGA 564
            ++     I    +                                     +L    + A
Sbjct: 561 AAMEAASGIPSPEWTQLAEGHGVSPRTLSVMAAATLSPADPWPEAPIDQKLALAFPGIAA 620

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWL--SLIRVPLVGDIIAQAIVEFYQNPRNI 622
              R+L    + +     E+  I   +        +  +  VG + A+A+ +F+  P N 
Sbjct: 621 PARRALGPLAVDWAGIV-ELARIAREDGPSMTLGEIAGIAGVGPVAARAVADFFHEPHNQ 679

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             V ALL E++           + +  K +VFTG L++  R +A+     LGA VS  +S
Sbjct: 680 AVVAALLAELTTVQDAERPKSDTAVTGKTVVFTGALERFTRDEAKARAESLGAKVSGSVS 739

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +KTD ++ G   GSKL  AQ+ GV ++ E+++L L+
Sbjct: 740 KKTDYLVAGPGAGSKLADAQKHGVAVLTEDEWLALI 775


>gi|39938924|ref|NP_950690.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M]
 gi|81402396|sp|Q6YQD6|DNLJ_ONYPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|39722033|dbj|BAD04523.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M]
          Length = 671

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/712 (31%), Positives = 377/712 (52%), Gaps = 50/712 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++ SL ++++  +  YY  S P + D +YDAL +    +   +P       P  P  
Sbjct: 7   IKQKIKSLVKQLTKANYQYYNLSNPDLSDQQYDALLKELINLETRYPQFKL---PYSPTL 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           KIGG +      + H  P +SL  ++N+E+++ F  RI +        +     E KIDG
Sbjct: 64  KIGGFVEKKFSTIKHKTPMMSLGNVFNLEEIKAFYDRIVKKIP-----TFSLLTELKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I+++Y+KG  V A  RG+G  GED++   + I TIP  L  ++   +EVRGE+Y+S  
Sbjct: 119 VAISLKYQKGILVQALTRGNGIWGEDITKNAQTIKTIPLRLKEDL--DLEVRGEIYLSHP 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN +     +  ++NPRNAASG LR+LN   +  R L+ FV+G+     +    Q 
Sbjct: 177 AFEKLNAQRKQENKPLFSNPRNAASGTLRQLNSAIVAQRNLSIFVYGISD-PYLTKPTQK 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L  +  LGF  N      + F  ++S   + K+I+  L YD DG+V K++E +    +
Sbjct: 236 ETLVFLTALGFTTNPHYYCVSNFENLLSVIEKYKTIKEQLTYDTDGIVIKINELAFHSLI 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++PRW  ++KFA   + + + +I  Q+GRTG++TPV ++ PV + G+L++   LHN
Sbjct: 296 GATAKAPRWATAYKFATITSQSIVQNIIFQVGRTGVITPVCKIMPVMVDGSLVSKVVLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR+ D V+V +AG VIP+++++I ++R    +P      CP
Sbjct: 356 YDYI-----------CKKDIRIKDHVIVHKAGSVIPEILEVIKSKRTDLQKPTLMIEKCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            CQ+ + +            + C     C  Q++++L HFVS++A +I  LG+Q +  FF
Sbjct: 405 ACQTILEKQPGE------VDYFCLNP-NCREQKIQKLIHFVSKNAMDINVLGEQTIIAFF 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   I  P+D++ L++ +      ++ + GFG   +TN+ D+I   +    E  +F
Sbjct: 458 DKN----LIAKPSDLYLLKKHKHI----LQEMPGFGAKKITNILDAIEASKQKGFEDVLF 509

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGI+H+G ++++ LAK++ + +N  Q    +I           ++  +G  IAQ+I ++
Sbjct: 510 ALGIKHIGKKVSQVLAKHFQTIENLQQATPELI----------TQIREIGIKIAQSIQQY 559

Query: 616 YQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + N  N+  V  L        S         +   NKK+V TGTLQK  R + Q+ + Q+
Sbjct: 560 FSNSCNLEEVSKLKTLGVSFQSTNPQNPTTQTIFTNKKIVLTGTLQKYSRLQIQQILEQM 619

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GA+++  LS + + +IVG N GSKL KAQ+L + I+ E++   +++     L
Sbjct: 620 GAIITNSLSLQNNYLIVGINAGSKLTKAQKLQIPIIEEKELQQIIENSQIKL 671


>gi|269123713|ref|YP_003306290.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112]
 gi|268315039|gb|ACZ01413.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112]
          Length = 675

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/692 (30%), Positives = 369/692 (53%), Gaps = 47/692 (6%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           I  ++  YY   + +I D EYDAL ++ + +   FP+L      N P   IGG+ +    
Sbjct: 23  IEIYNHHYYNLDESLITDREYDALLKKIELLEKEFPELKLK---NSPTEIIGGKSSDKFK 79

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           KV H    LSL   ++++DL+ F  R+ +       N++ + LE K+DG  I++ YEKGK
Sbjct: 80  KVKHKKAMLSLANTYSMDDLKAFDQRVKKEVG----NNVEYVLELKLDGLSISLIYEKGK 135

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            + A  RGDG  GEDV+  +  I TIP++L   I   +EVRGE+ +   +F  +N E   
Sbjct: 136 LIQAVTRGDGSVGEDVTENVIQISTIPKILKDEI--DLEVRGEIVLPLKEFERINREREE 193

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
            G   +ANPRN A+G +R+L+ + +  R L+ +++ L  + +     Q E ++ ++ LGF
Sbjct: 194 NGETIFANPRNVAAGTIRQLDYSIVKDRNLDCYLYYLVDSEKYGLNTQLESIEYIQKLGF 253

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
                  + +    +        + R  L Y+ DGLV KV+E+ L   LG  A+SPRW +
Sbjct: 254 KTTGIFTKCSKIEDLEKEIEYWDNNRKKLEYETDGLVIKVNEYYLHNLLGYTAKSPRWAM 313

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++KF  +Q  T++LDI  Q+GRTG++TPVA LEPV+I G+++  A+LHN D IK L    
Sbjct: 314 AYKFKAEQKETKMLDISFQVGRTGVITPVAELEPVHISGSVVRRASLHNIDEIKRL---- 369

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                   +++GD V+V++A E+IP+VV +++ +R  + +       CP C + + ++  
Sbjct: 370 -------GLKIGDIVIVEKAAEIIPQVVKVLLEKRSGNEKEIEIIDKCPSCNNTIFKEEG 422

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                   A +C     C  +   ++++FVSRDA NI+G G + +D F         IR 
Sbjct: 423 Q------VALKCKNP-NCVEKLKRKIEYFVSRDALNIQGFGNKLVDKFVD----LGYIRS 471

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
             DIF L+  +     ++ N+   G  S+  L D+I+K ++I  E+  +SLGI +VG   
Sbjct: 472 IIDIFKLKNHK----EELINLDKMGTKSIEKLLDNIDKAKDIGFEKLFYSLGIEYVGKTT 527

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           ++ +  ++ S +N            N     L+ +  +G+ ++ +I  ++++  NI  + 
Sbjct: 528 SKLVVSHFGSIENI----------INASLEELVLIEGIGEKVSLSIYNYFKDNENISLIN 577

Query: 627 ALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
            +           E+ +++    NKK + TG      R + ++ + + G +  + +++  
Sbjct: 578 EIKNIGFDLSFEKEQILNNNFITNKKFLATGKFVNYSREEIKKVIEKNGGIYLSSVNKNL 637

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           D +I+G+  GSKLEKA++LGV+I+ EE+FL L
Sbjct: 638 DYLIIGEKAGSKLEKAEKLGVRIITEEEFLKL 669


>gi|119476275|ref|ZP_01616626.1| DNA ligase [marine gamma proteobacterium HTCC2143]
 gi|119450139|gb|EAW31374.1| DNA ligase [marine gamma proteobacterium HTCC2143]
          Length = 781

 Score =  643 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/619 (33%), Positives = 329/619 (53%), Gaps = 45/619 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L   ++ H+  Y+   +P + D+EYD L R+   +   FP    +   + P  +
Sbjct: 8   KQQIEELRSTVNLHNYRYHALDEPTVPDAEYDRLIRQLQVLEAKFPQFITN---DSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G +      +V H  P LSL+ ++N ++L  F  R+     K       +  EPK+DG 
Sbjct: 65  VGAKPLAGFNQVQHEAPMLSLDNVFNAQELSDFDHRVKERLGK--GVKFSYCCEPKLDGA 122

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196
            +++ Y  GK V  A RGDG++GED++  +R IPTIP  ++    P ++EVRGE+Y+ + 
Sbjct: 123 AVSLLYRDGKLVRGATRGDGNTGEDITHNVRTIPTIPLALIGEGYPRLLEVRGEIYMPRA 182

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQ 254
            F  LN    A   K + NPRNAA+G LR L+      R L    + +G       A   
Sbjct: 183 GFDMLNKRARANDEKLFVNPRNAAAGSLRMLDAKITAERPLEMCCYSVGVMEGGDLAPNH 242

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L +++  GF +NN +R  +   G + Y++ +   R  LPYDIDG+VYKVD  S Q+ 
Sbjct: 243 SGILAQLQGWGFRINNEMRVVDDVEGCLKYHDYLLRRRPDLPYDIDGIVYKVDTISQQQS 302

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+ PRW I+HKF  ++  T LLD+D Q+GRTG +TPVARL PV +GG  ++NATLH
Sbjct: 303 LGFTAKGPRWAIAHKFPAEEEITTLLDVDFQVGRTGAVTPVARLAPVFVGGVTVSNATLH 362

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I + D V+V+RAG+VIP++  +++  R  DA   +FP +C
Sbjct: 363 NRDEIERL-----------GIMINDAVVVRRAGDVIPQIAKVVLERRGSDAIKIAFPDYC 411

Query: 435 PICQSRVVR------DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S V R        + +   +  A+RC G L C AQ  + + HF SR A +I+GLG+
Sbjct: 412 PVCGSHVERVKIVTHSKSGRREGVGVAYRCVGRLVCRAQLSQAIIHFASRKALDIDGLGE 471

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     ++ PAD++ LQ     +        GF ++S  NL  +I  RR +
Sbjct: 472 KIVEQLVIEER----LKSPADLYRLQVSDLAALE------GFAELSAKNLVSAIAARRAV 521

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L + +F+LGI  VG E A+ LA+ + S +        ++          I++P +G  +
Sbjct: 522 PLHKLVFALGIPDVGEETAKVLARVFGSLERIRVAKPELL----------IQLPDIGREV 571

Query: 609 AQAIVEFYQNPRNICAVEA 627
           A  I EF+ +  N   ++ 
Sbjct: 572 AGEITEFFADNHNALVLDD 590



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 14/179 (7%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S  + I S  I ++G   A  +A ++ +       +  ++A + DD      V  +    
Sbjct: 613 SFPQLIASFNISNIGPTSAARVAAHFGT-------MAALMAASIDDLAM---VEKLSVKA 662

Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
           A  + +++Q  +N      +E  L +        +    +  +     V TGTL+ + R 
Sbjct: 663 ASGLFDYFQCTQNRQYAEQLEQQLLDFKMHWNCEKGQTENLPLSGMTYVVTGTLESMGRD 722

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            A++ +  LGA V+  +S+ T  ++ G   GSKL KA+QLGV +M+E  FL LL +++ 
Sbjct: 723 LAKQKLESLGAKVAGSVSKNTHCVVAGSAAGSKLVKAEQLGVTVMDEAMFLALLAEFDV 781


>gi|302380539|ref|ZP_07269004.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3]
 gi|302311482|gb|EFK93498.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3]
          Length = 662

 Score =  643 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 198/711 (27%), Positives = 360/711 (50%), Gaps = 59/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +  +  L   ++ +   YY    P+I DSEYD L      +            PN P 
Sbjct: 2   EKQDRMKYLVDILNKYAYHYYTLDDPLIADSEYDVLYDELVNLEKE----TGIVLPNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
           N+IGGE+     K  H     SL K  + E++R ++ +   F +  ++N       + F 
Sbjct: 58  NRIGGEVLSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVENYNENHVNKLPKVEFY 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K DG  + + Y+ G  V A  RG+G  GE +++ ++ I +IP  L +    ++E++G
Sbjct: 118 VEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIP--LKIKDKRLMEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           E  +  +     N            N RNAA+G LR L+P+    R L+ + + +    +
Sbjct: 176 EGVMPLSSLEKYN----KTHEPKLKNARNAAAGALRNLDPSVTRERNLDAYFYNVNYLQD 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q EM++ +    F +    + A +F  I  + +E+  +R+ +    DG+V KV++
Sbjct: 232 NELETQEEMMKFLGDNYFKLYPYEKHATSFEEISKFIDEIFELRNEIDVLTDGVVIKVND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  +++LG   + PRW I++KF  ++ +T + +++  +GRTG +TP A LEPV IG   +
Sbjct: 292 FKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIGNVTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I+            + +R+   V V+R+ +VIP+++ ++ N    D +  
Sbjct: 352 KRATLNNIDDIER-----------KQVRLNSEVFVRRSNDVIPEIMGVV-NPDQEDTEEI 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P +CP C S + RD             C   ++C+ Q ++R+ HF SR+A NI+GL +
Sbjct: 400 EIPHYCPYCHSELFRD--------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNIDGLSE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L+   +      +I+   +I+ +++ Q         + GF +    NL ++I K +N+
Sbjct: 452 KTLEVLLEK----LNIKSIEEIYDVKKEQLM------QLDGFKEKKSQNLINAIEKSKNV 501

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FIF+LGI  +G + +  LA+ Y S+ N  +            +  LI++  +G++I
Sbjct: 502 DLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIEDIGNVI 551

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ IVEF+ +     ++++LL +      ++ +N+  +++N   V TG+L    R +  +
Sbjct: 552 AEEIVEFFHDETISNSIDSLLSKGIKI--KNPENIEKKLDNLTFVLTGSLVNYSRKELTD 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ LGA VS+ +S+ TD ++ G+  GSKL KA+ LGVK+M E++    L 
Sbjct: 610 KLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDELNSFLD 660


>gi|222823679|ref|YP_002575253.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100]
 gi|254781279|sp|B9KG17|DNLJ_CAMLR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222538901|gb|ACM64002.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100]
          Length = 651

 Score =  643 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/701 (31%), Positives = 350/701 (49%), Gaps = 60/701 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E     +        YY+  +P+  D EYD L R        + D       + P   I
Sbjct: 4   QEYLEKVKLAKEWMRAYYEDDEPLASDEEYDKLIRELKEFEALYKDKI---SKDSPTQNI 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
              +     K+THS    S+E +++  +LR +  R              F +EPK DG  
Sbjct: 61  APTIQSEFHKITHSAKMWSMEDVFDEAELRAWAKRAK--------CEFDFFIEPKFDGAS 112

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE GK +  A RGDG  GED++  ++ I  IP+++     + IE+RGEV I K DF
Sbjct: 113 LNLTYENGKLISGATRGDGEIGEDITLNVKEISNIPKII--PYKDKIEIRGEVVILKEDF 170

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N++    G   +ANPRN ASG LR+L+ +    R L F+  G+G+ S  F+K   E+
Sbjct: 171 EKINEKRAKDGLSLFANPRNGASGSLRQLDTSITKERNLKFYPWGVGENSLKFSK-HSEV 229

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           ++ +R LGF  ++ V    T   ++  Y+E+   R   P  +DG+V +VD+    ++LG 
Sbjct: 230 MEFIRSLGFLKDDFVYCVKTLDEVLEKYHELLEKRDQKPMMMDGMVVRVDDLKKCQELGY 289

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + P++M + KF   + +T LL +++Q+GR+G++TPVA LEPV + G ++ +ATLHN D
Sbjct: 290 TVKFPKFMAAFKFPALEKTTTLLGVNLQVGRSGVITPVAILEPVELDGVVVKSATLHNFD 349

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I  L            + +GD V V R+G+VIPK+  +    R       + PS CP C
Sbjct: 350 EITRL-----------GVMIGDSVSVIRSGDVIPKITKVFTQRRDGLESKITKPSLCPEC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++           A  +C   L C A+ +  + +FVS+   NI+GLG+  ++  FK 
Sbjct: 399 LSELL--------DEGAFLKCQN-LDCKARLVNSIIYFVSKKCLNIDGLGENIVELLFKE 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I     IF L+           N+ GF +  + NL ++I   +  SL RFI +L
Sbjct: 450 GK----ITNIESIFFLK------YDDFLNLEGFKEKKINNLLNAIENAKKCSLSRFITAL 499

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI H+G   A+ LA+ +  +  F Q            + + + +   G+ +A+++ EF  
Sbjct: 500 GIEHIGEVAAKKLAQSFG-FDWFLQ-----------SYEAYVNLEGFGEQMAKSLQEF-- 545

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              N   ++   + +     + E  ++  I NK  V TGTL K  R   +E +   GA V
Sbjct: 546 TKINHQRIKHFYEILHLEDEKKELALNENISNKTFVITGTLSK-SRDHFKELIESFGAKV 604

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+ +S+KTD ++ G   GSKLEKAQ LGVK +NE++F  LL
Sbjct: 605 SSSVSKKTDFVLYGSEAGSKLEKAQSLGVKCINEDEFNALL 645


>gi|218260659|ref|ZP_03475861.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224427|gb|EEC97077.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii
           DSM 18315]
          Length = 606

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/648 (32%), Positives = 329/648 (50%), Gaps = 49/648 (7%)

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +++    +V H  P LSL   ++ ++++ F  RI R              E K DGT 
Sbjct: 2   GSDLSKEFEQVVHKYPMLSLGNTYSEDEVKDFYERIARDLN----EPFEIVAELKYDGTS 57

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           I++ YE G+ V A  RGDG  G+DV+A ++ I ++P  L     P   E+RGE+ +   +
Sbjct: 58  ISLTYEDGRLVRAVTRGDGTRGDDVTANVKTIRSVPLKLMGDGYPAAFEIRGEILLPWAE 117

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E        +ANPRNAASG L++ NP  +  R L+ + + L    E+ A+  ++
Sbjct: 118 FDRLNKEREQQEEPLFANPRNAASGTLKQQNPAIVAARKLDAYFYYL-LGEELPAETHFD 176

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+  R  GF V N +R  N+   I  Y     + R  LP   DG+V KV+    Q  LG
Sbjct: 177 NLEAARSWGFKVPNVIRVCNSLEDIYDYIAYWDAERKNLPVATDGIVLKVNSLRQQLNLG 236

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G  +  A+LHN 
Sbjct: 237 FTAKSPRWAIAYKFQAERAVTRLNSVSFQVGRTGAVTPVANLEPVLLAGTTVKRASLHNA 296

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSFCP 435
           D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   CP
Sbjct: 297 DIIEGL-----------DLHLGDKVFVEKGGEIIPKIVGVDVEARGLLVGDKVRFIRSCP 345

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + ++R          AAH C     C  Q   +++HFV+R A NI  +G + ++  +
Sbjct: 346 ECGTPLMRPEGE------AAHYCPNEAGCPPQIKGKIEHFVTRRAMNI-NMGPETVEDLY 398

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +    A  I+  AD++TL+        +      + D S  NL  S+ + + +  ER ++
Sbjct: 399 E----AGYIKDTADLYTLEISDLLRLER------WADKSARNLMASLEESKQVPFERVLY 448

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR VG  +A+ L   + S     Q            +  LI V  +G+ IA++I+ +
Sbjct: 449 GLGIRFVGETVAKRLVAAFHSMDQLEQA----------SFEDLIAVDEIGERIARSIIAY 498

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + + RN   V  L +         E     S +++   +V +GT  +  R + +  + Q 
Sbjct: 499 FADERNRNLVNRLKEYGLRMSVAEEVLANRSEKLKGLSIVISGTFARHSRDEYKAMIEQH 558

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G   S  +S KTD I+ GDN G +KLEKA +LGVKI+NE++FL ++ +
Sbjct: 559 GGKNSGSVSGKTDYILAGDNMGPAKLEKAAKLGVKIINEDEFLNMIAE 606


>gi|257463090|ref|ZP_05627491.1| NAD-dependent DNA ligase [Fusobacterium sp. D12]
 gi|317060689|ref|ZP_07925174.1| DNA ligase [Fusobacterium sp. D12]
 gi|313686365|gb|EFS23200.1| DNA ligase [Fusobacterium sp. D12]
          Length = 673

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/701 (31%), Positives = 362/701 (51%), Gaps = 48/701 (6%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM- 82
           L++++  + D YY  ++ +I D EYD L +  + +        +  D       +G  + 
Sbjct: 14  LQKKLRSYSDAYYSQNESLISDYEYDMLLKELETLEAE----LQIADETSITQTVGSSLK 69

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           N    K  H  P LSL   + I ++  FI R  +     ++  +   +E K+DG  I++ 
Sbjct: 70  NTKFKKTAHRTPMLSLSNTYQIGEVEDFILRAKKNLNITEN--LEMEMEIKLDGLSISVI 127

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE+GK   A  RGDG  GEDV+  +  I TIP+ LS  +   IE+RGE+ +   +F  LN
Sbjct: 128 YEQGKLQRAVTRGDGVIGEDVTENVLQIETIPQELSEKL--DIEIRGEIVLPFTEFETLN 185

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
              IA G + +ANPRNAASG LR+L+P  +  R+L  + + +    +     Q E +  +
Sbjct: 186 QMRIAKGEEVFANPRNAASGTLRQLDPQIVKERHLAAYFYFIVNAEQYGIHSQKESISFL 245

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             L  P             + +  +     R  LPY+ DGLV K++  +  ++LG   +S
Sbjct: 246 EKLSLPTTKICEVFQNIRELEARISHWSVERENLPYETDGLVLKINHIAFWEKLGSTGKS 305

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW +++KF  KQ +T+LLDI  Q+GRTG +TPVA LE V + G+ +  A+LHN D I  
Sbjct: 306 PRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVKRASLHNYDEI-- 363

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD V +++A E+IP+V+  +  +R  + +    P  CPIC S +
Sbjct: 364 ---------LRKDIRIGDTVFIEKAAEIIPQVIKAVKQDRTGEEKEIKAPEHCPICHSLL 414

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            ++      + +   +C G   C  +    +++FVSRD  NI GLG + L+ F +     
Sbjct: 415 EKE------EGLVDLKC-GNKHCPGKIQGEMEYFVSRDGMNISGLGGKILEKFLELH--- 464

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +    DI+ L+ ++     ++E +   G  S+ NL  SI + +N S E+ +++LGI  
Sbjct: 465 -YLEDVGDIYYLKEKK----EELEQVEKMGKKSIENLLTSIEESKNASYEKVLYALGIPF 519

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   A+ LAK        ++ IN + +   +D      +  +GD +A++IVEF+QN R 
Sbjct: 520 VGKVAAKLLAKE-------SKNINQLQSMTEEDLKE---IEGIGDKMARSIVEFFQNERK 569

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
              +E L K         +   +++ ++ K  + TGTL    R + QE + +LG    + 
Sbjct: 570 KELIEKLRKVGLRFEETDKDTTAAKFLQGKTFLVTGTLSHYTRAELQEEIEKLGGSNLSS 629

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
           +S+K D +IVG+  GSKLEKA+ LG V I+ EE+FL   ++
Sbjct: 630 VSKKLDYLIVGEKAGSKLEKAKALGTVTILKEEEFLSFKEK 670


>gi|304440548|ref|ZP_07400435.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371026|gb|EFM24645.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 650

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 203/695 (29%), Positives = 341/695 (49%), Gaps = 56/695 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L + ++ +   YY   +P++ D EYD L      +            P+ P N++
Sbjct: 3   KRIDELVELLNKYSYHYYTLDEPLVADVEYDRLYDELVKLEKE----TGYIRPDSPTNRV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     K TH  P  S++K  + ++LR +  R  R         I + +E K DG  
Sbjct: 59  GGELLTGFVKHTHLSPLYSMDKAQSFDELRAWEERNMRLLP--GVKDIDYVVELKFDGLT 116

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + Y  G    A+ RG+G  GE++   ++ I ++P  LS+    + EV+GE  +    F
Sbjct: 117 INLTYNNGILENASTRGNGLIGEEILPQVKTINSVP--LSIEYKGLFEVQGEGLMPFKAF 174

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
              N+           NPRNAA+G LR L+P     R L+ + + +G       K   EM
Sbjct: 175 NKYNETAEE----VLKNPRNAAAGALRNLDPKVTRKRNLDAYFYNVGYIEGREFKTDTEM 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            + +R   F VN            +   N+++ +R +L   IDG   KVD++SL+++LG 
Sbjct: 231 KEFLREQKFKVNPIYYHVKNIDEAIECINKIEEMRDSLDVLIDGATIKVDDYSLRERLGY 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRW +++K+  K+ +T+LLD+   +GRT  +TP A LEPV IGG  I  ATL+N D
Sbjct: 291 TNKFPRWAVAYKYEAKEVTTKLLDVIWNVGRTAKVTPSAILEPVEIGGVTIQRATLNNFD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            + +R+G RVL++R+ +VIP+++  + +      +    P+ CP C
Sbjct: 351 DIQR-----------KKLRLGSRVLLRRSNDVIPEILGAVPS--DEKTEEIKLPTHCPYC 397

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S + +D             C   L+C  Q + R+ HF SRDA NIEGL  +        
Sbjct: 398 GSELYKD--------GVHIFCPNTLSCLPQLIGRIVHFTSRDAMNIEGLSDKTAAVLISD 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I+  +D++ + +    S        GF D    NL + + K ++++L  F+++L
Sbjct: 450 ----LDIKEVSDLYDITKENLMSLE------GFKDKKSDNLLEQLEKSKDVNLSNFVYAL 499

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG + AR LA ++ S +         +          + +  VG I A  I EF+ 
Sbjct: 500 GIHNVGIKAARDLADHFKSLEGLMNATEEEL----------VSIDDVGPITAHEIYEFFH 549

Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           + R   +++ L+   ++P      K+ +S     K+V TG L +  R + ++ +  LGA 
Sbjct: 550 DERIKDSIKKLIDHGITPKYVDVAKDSNSNFAGLKIVLTGKLSRP-RKEIEKELLSLGAE 608

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           V   +S+ TD++I+G+N GSK +KA++LG+KI++E
Sbjct: 609 VVGSVSKNTDLVIIGENAGSKADKARELGIKIIDE 643


>gi|315637028|ref|ZP_07892251.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22]
 gi|315478564|gb|EFU69274.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22]
          Length = 648

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/707 (31%), Positives = 360/707 (50%), Gaps = 61/707 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+    +  L        + YY +  PI  D EYD L R C A     P L+    P
Sbjct: 1   MTKEEYDLNIEKLIS----WANAYYVFDNPIATDEEYDKLARLCLAYEQENPKLSH---P 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG +     K +H     S E ++N ++L  +I R  +      + ++ F  +
Sbjct: 54  NSPNKRVGGIVLDGFIKASHLSRMWSQEDVFNTQELEDWIKRASKV-----NTNLQFFCQ 108

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  + + YE G    A  RGDG  GEDV+   + I +IP  L +    +IE+RGEV
Sbjct: 109 PKFDGASLNLIYENGILKQAITRGDGTVGEDVTNNAKTIFSIP--LEIEEKSLIEIRGEV 166

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I K DF  +N E    G + +ANPRNAA+G LR+L+      R L F V G+G+ S + 
Sbjct: 167 VIKKADFEKINIERAKNGEQLFANPRNAAAGSLRQLDSNITAKRKLFFNVWGIGQNS-LE 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E+++ +  LGF        A+    I + Y++  SIR+     +DG+V K+D+  
Sbjct: 226 HKKYSEIMEYIYSLGFERPQMQTLASNIEEIENLYHKFISIRNDFEMMLDGMVIKIDDIE 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG   + PRW  ++KF   + +T+L  I +Q+GRTGI+TPVA +EP  I G+ ++ 
Sbjct: 286 TQEELGYTVKFPRWSCAYKFPAVEKTTKLKAITLQVGRTGIITPVAEVEPTLIDGSTVSR 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           D+++ D V++ ++G++IPK+  +    R  D    S 
Sbjct: 346 ATLHNFDEIERL-----------DLKINDEVIIIKSGDIIPKITKVFFERRKGDEITISR 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S V+              +C   L C ++ +  + +F S++  NI+GLG + 
Sbjct: 395 PTSCPTCNSEVL--------DEGTMIKCQN-LDCPSRVVNSIIYFASKNCMNIDGLGNKI 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F  +     I    DI++L+          +++ GF +  + NL  +I   R   L
Sbjct: 446 VEQLFNEKK----IYDILDIYSLKYEDL------QDLEGFKEKKINNLLKAIENTRGSEL 495

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R I +LGI H+G   ++ +   +             +   N D+ SLI +   G+ +A 
Sbjct: 496 HRVINALGIEHIGEVASKQICLEFG------------LDVINKDYDSLIALDGFGEQMAN 543

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + +EF +   N   VE L+  ++P +   ++   +  +NK +V TGT+ K  R + +  +
Sbjct: 544 SFIEFMRV--NKNLVEKLISIINPKVEIKKEVSENPFKNKTVVITGTMSK-SRGEIKSML 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             LGA VS+ +S+KTD +I G++ GSK +KA +LGVK++ EE+   L
Sbjct: 601 EDLGAKVSSGVSKKTDYVIFGEDAGSKYDKAIELGVKLLTEEEMNSL 647


>gi|269794376|ref|YP_003313831.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542]
 gi|269096561|gb|ACZ20997.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542]
          Length = 871

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/831 (26%), Positives = 363/831 (43%), Gaps = 138/831 (16%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR   + L + I  H   YY    P + D+EYD L R    I  A P L     P+ P  
Sbjct: 44  ARTRWAELAETIEAHQFAYYVRDAPTVSDAEYDTLLRELGDIEEAHPQL---RTPDSPTQ 100

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     V H    LSL+  +N EDL  +  R++R         + +  E KIDG
Sbjct: 101 RVGGTFSTDFAAVDHREQMLSLDNAFNAEDLDAWAERVHREIGTS---QVHYLCEVKIDG 157

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVRGEVYI 193
             I + YEKG+ V AA RGDG +GEDV+  +  I  IP+ L  ++   P++IE+RGEV++
Sbjct: 158 LAIALLYEKGRLVRAATRGDGRTGEDVTLNVLTIEGIPKALDASVREVPDLIEIRGEVFM 217

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK-----TS 247
             + F ALN+  +A G+ P+ANPRNAA+G LR+ NP     R L  + HG+G       +
Sbjct: 218 LVDQFAALNEAQVAAGKPPFANPRNAAAGSLRQKNPKITAGRPLRMYAHGVGALHWEAGT 277

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               + Q +     R  G PV++  R      G+    +     R  + +++DG+V KVD
Sbjct: 278 PSELRRQSDAYDYFRAWGVPVSDHNRVVEGMPGVQEMIDYYGDHRHDIEHELDGIVVKVD 337

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E +LQ+QLG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   +EPV + G+ 
Sbjct: 338 ELALQRQLGATSRAPRWAIAYKYPPEEVNTTLLDILVNVGRTGRVTPFGMMEPVLVAGST 397

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   ++            + + +GD V++++AG+VIP++V  +V+ R    + 
Sbjct: 398 VSMATLHNGSEVRR-----------KGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSERE 446

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP C + +         +     RC    +C +Q  ER+ H   R AF+IE +G
Sbjct: 447 FVMPTECPSCGTTL-----APAKEGDVDIRCPNQRSCPSQLRERVFHLAGRGAFDIEAMG 501

Query: 488 KQQLDFFFKSEDPA------------------------FSIRIPADIFTLQRRQQTS--T 521
            +        E                           F +   AD+   + +++    T
Sbjct: 502 WEAAIALVDPEHNRPESADAEGVPVQVPVLETEAGFFDFEVDALADVLVWREKKKAGVGT 561

Query: 522 TKIENILGFGDVSVTN-----------LYDSINKRRNISLERFIFSLGIRHV-------- 562
              E +  F   +               ++   K +   L R + +L IRHV        
Sbjct: 562 GVWEQVPFFWTKATAKTPSKPSATTVKFFEEREKAKARPLWRVLVALSIRHVGPTAARAL 621

Query: 563 ------------------------GAEIARSLAKYY---LSYQNFAQEINNIIAHNND-- 593
                                   G  IAR++  ++    S +            + D  
Sbjct: 622 ATAFESVEAIMAATEEELAATEGVGPTIARAVRIWFNGRSSVEPVPVAAAPTTEADTDEA 681

Query: 594 --DWLSLIRVPLVG-DIIAQAIVEFYQ----------------------------NPRNI 622
             D      VP  G ++ A A+                                 +  + 
Sbjct: 682 DTDEADTDAVPGDGVELPADAVPGDGAPPADAPDPGKASSADEVHDEDDDVEIDGSDWHR 741

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++             ++++   +E   +V TG+L+   R + +E +   G   +  +S
Sbjct: 742 EIIDRWRAAGVRMRDERDESIVRTLEGFTVVVTGSLEGFNRDQVKEAIIVRGGKAAGSVS 801

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH--DDD 731
           +KTD ++VG+N GSK  KA++LG+ I++E  F+ LL +          DDD
Sbjct: 802 KKTDFVVVGENAGSKEAKARELGLTILDEAGFVTLLAEGPPAAAEPLLDDD 852


>gi|169824266|ref|YP_001691877.1| NAD-dependent DNA ligase LigA [Finegoldia magna ATCC 29328]
 gi|254781333|sp|B0RZW0|DNLJ_FINM2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167831071|dbj|BAG07987.1| NAD-dependent DNA ligase [Finegoldia magna ATCC 29328]
          Length = 662

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 198/711 (27%), Positives = 359/711 (50%), Gaps = 59/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +  +  L   ++ +   YY    P+I DSEYD L      +            PN P 
Sbjct: 2   EKQDRIKYLVDILNKYAYHYYTLDDPLIADSEYDVLYDELVNLEKE----TGIVLPNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
           N+IGGE+     K  H     SL K  + E++R ++ +   F Q  ++N       + F 
Sbjct: 58  NRIGGEVLSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVQNYNENHVNKLPKVEFY 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K DG  + + Y+ G  V A  RG+G  GE +++ ++ I +IP  L +    ++E++G
Sbjct: 118 VEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIP--LKIKDTRLMEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           E  +  +     N            N RNAA+G LR L+P     R L+ + + +    +
Sbjct: 176 EGVMPLSSLENYN----KTHEPKLKNARNAAAGALRNLDPAVTRERNLDAYFYNVNYLQD 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q EM++ +    F +    + A +F  +  + +E+  +R+ +    DG+V KV++
Sbjct: 232 NELETQEEMIKFLGDNYFKLYPYEKHATSFEEVSKFIDEIFELRNEIDVLTDGVVIKVND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  +++LG   + PRW I++KF  ++ +T + +++  +GRTG +TP A LEPV IG   +
Sbjct: 292 FKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIGNVTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I+            + +R+   V V+R+ +VIP+++ ++ N    D +  
Sbjct: 352 KRATLNNIDDIER-----------KQVRLNSEVFVRRSNDVIPEIMGVV-NPDQEDTEEI 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P +CP C S + RD             C   ++C+ Q ++R+ HF SR+A NI+GL +
Sbjct: 400 EIPHYCPYCHSELFRD--------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNIDGLSE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L+   +      +I+   +I+ +++ Q         + GF +    NL ++I K +N+
Sbjct: 452 KTLEVLLEK----LNIKSIEEIYDVKKEQLM------QLDGFKEKKSQNLINAIEKSKNV 501

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FIF+LGI  +G + +  LA+ Y S+ N  +            +  LI++  +G++I
Sbjct: 502 DLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIEDIGNVI 551

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ IVEF+ +     ++++LL +      ++ +N+  +++N   V TG+L    R +  +
Sbjct: 552 AEEIVEFFHDETISNSIDSLLSKGIKI--KNPENIEKKLDNLTFVLTGSLVNYSRKELTD 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ LGA VS+ +S+ TD ++ G+  GSKL KA+ LGVK+M E++    L 
Sbjct: 610 KLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDELNSFLD 660


>gi|256028750|ref|ZP_05442584.1| preprotein translocase subunit SecA [Fusobacterium sp. D11]
 gi|289766653|ref|ZP_06526031.1| NAD-dependent DNA ligase [Fusobacterium sp. D11]
 gi|289718208|gb|EFD82220.1| NAD-dependent DNA ligase [Fusobacterium sp. D11]
          Length = 696

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/711 (31%), Positives = 368/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L ++++ + D YY  +K +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H  P LSL   +NI ++  FI RI +   KK    + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISKK--QELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGFKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKEIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  +R  + +    P  CPI
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKSIKEDRTGNEKIIEEPVNCPI 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      + +   +C     C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLERE------EGLVDIKCVNE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DI+ L+  ++     +ENI   G  S+ NL +SI + +N   ++ I++
Sbjct: 484 ----LGYIKTVVDIYDLKNHREA----LENIDKMGKKSIENLLNSIEESKNRDYDKVIYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK             NI       +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIAEIGKVTSKILAK----------ASKNIDKLMTMTFEELTSIDGIGEIAANEIIAFF 585

Query: 617 QNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  +N   +    E  LK        + +N++     K  +FTGTL+   R + +E + +
Sbjct: 586 KKEKNQKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|297588239|ref|ZP_06946882.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516]
 gi|297573612|gb|EFH92333.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516]
          Length = 662

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 199/711 (27%), Positives = 356/711 (50%), Gaps = 59/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +  +  L   ++ +   YY    P+I DSEYD L      +            PN P 
Sbjct: 2   EKKDRIKYLVDILNKYAYHYYTLDDPLIEDSEYDVLYDELVNLEKE----TGIVLPNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
           N+IGGE+     K  H     SL K  + E++R ++ +   F +  + N       + F 
Sbjct: 58  NRIGGEVLSGFEKHVHLNTLYSLGKAQSKEEVRNWVNKTIEFVENYNKNHVNKLPQVEFY 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K DG  + + Y+ G  V A  RG+G  GE +++ +R I +IP  L +    ++E++G
Sbjct: 118 VEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVRTINSIP--LKIKDTRLMEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           E  +  +     N            N RNAA+G LR L+P     R L+ + + +    E
Sbjct: 176 EGVMPLSSLEKYNQ----THEPKLKNARNAAAGALRNLDPAVTRERNLDAYFYNVNYLEE 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q +M++ +    F +    + A +F  I  + +E+  +R+ +    DG+V KV++
Sbjct: 232 NVLETQEQMMKFLGDNYFKLYPYEKHATSFEEISEFIDEIFELRNEIDVLTDGVVIKVND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  +++LG   + PRW I++KF  ++ +T + +++  +GRTG +TP A LEPV IG   +
Sbjct: 292 FKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIGNVTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I+            + +R+   V V+R+ +VIP+++ ++ N    D +  
Sbjct: 352 KRATLNNIDDIER-----------KQVRLNSEVFVRRSNDVIPEIMGVV-NPDQEDTEEI 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P +CP C S + RD             C   ++C+ Q ++R+ HF SR+A NI+GL +
Sbjct: 400 EIPHYCPYCHSELFRD--------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNIDGLSE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L    +      +I    +I+ +++ Q         + GF +    NL ++I K +N+
Sbjct: 452 KTLKVLLEK----LNITSIEEIYDVKKEQLM------QLEGFKEKKSQNLINAIEKSKNV 501

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FIF+LGI  +G + +  LA+ Y S+ N  +            +  LI++  +G++I
Sbjct: 502 DLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFDELIQIEDIGNVI 551

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ IVEF+ +     ++++LL +      ++ +N+  +++N   V TG+L    R +  +
Sbjct: 552 AEEIVEFFHDETISHSIDSLLSKGIKI--KNPENIEKKLDNLTFVLTGSLVNYSRKELTD 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ LGA VS+ +S+ TD ++ G+  GSKL KA+ LGVK+M E++    L 
Sbjct: 610 KLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDELNSFLD 660


>gi|254303498|ref|ZP_04970856.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148323690|gb|EDK88940.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 696

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/711 (31%), Positives = 375/711 (52%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +++  + D YY  +K +I D E+D L +  +++   +P    +   + P   +
Sbjct: 29  EKIVKLREDLDKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKET---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H+ P LSL   +NI ++  FI RI +   K  +  + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHAHPMLSLANSYNIGEIVDFIERIKKKISK--EQELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLEAMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P+ CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPTHCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      + +   +C     C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLERE------EGLVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   ++ I+S
Sbjct: 484 ----LGYIKTVVDIFDLKEHKEA----LENIDKMGKRSIENLLNSIEESKNRDYDKVIYS 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK        ++ I+ ++    +D  S   +  +G+I A  I+ F+
Sbjct: 536 LGIPFIGKVASKVLAKA-------SRNIDKLMTMTFEDLTS---IEGIGEIAANEIIAFF 585

Query: 617 QNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
              +N   +    E  LK        + +NV+     K  +FTGTL+   R + +E + +
Sbjct: 586 NKEKNQKIIQGLKEKGLKFEIKESEINVQNVNPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSISKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|19705038|ref|NP_602533.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|81485410|sp|Q8RI94|DNLJ_FUSNN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|19712952|gb|AAL93832.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 696

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/711 (31%), Positives = 376/711 (52%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L ++++ + D YY  +K +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H  P LSL   +NI ++ +FI RI +   K  +  + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHLHPMLSLANSYNIGEIVEFIERIKKKIPK--EQELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGFIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    N  +  R +LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKDIEKRINYWEKERESLPYETDGLVIKVDEINLWDEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L D+  Q+GRTG LTPVA L+ V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P+ CPI
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPTCCPI 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      + +   +C     C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLERE------EGLVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   ++ +++
Sbjct: 484 ----LGYIKTVVDIFDLKNHREA----LENIDKMGKKSIENLLNSIEESKNRDYDKILYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK        ++ I+ ++A   +D  S   +  +G+I A  I+ F+
Sbjct: 536 LGIAEIGKVTSKILAKA-------SKNIDKLMAMTFEDLTS---IEGIGEIAANEIIAFF 585

Query: 617 QNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
              +N   +    E  LK          +NV+     K  +FTGTL+   R + +E + +
Sbjct: 586 TKEKNQKIIQGLKEKGLKFEIKESEASVQNVNPNFVGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|237743296|ref|ZP_04573777.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1]
 gi|229433075|gb|EEO43287.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1]
          Length = 696

 Score =  640 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/711 (30%), Positives = 367/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L ++++ + D YY  +K +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H  P LSL   +NI ++  FI RI +   K  +  + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISK--EQELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADKLGFKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKEIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  A+LHN 
Sbjct: 322 FTSKTPRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP++V  I  +R  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQIVKSIKEDRTGNEKIIEEPVNCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      + +   +C     C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLERE------EGLVDIKCVNE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DI+ L+  ++     +ENI   G  S+ NL +SI + +N   ++ I++
Sbjct: 484 ----LGYIKTVVDIYDLKNHREA----LENIDKMGKRSIENLLNSIEESKNRDYDKVIYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK             NI       +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIAEIGKVTSKILAK----------ASKNIDKLMTMTFEELTSIDGIGEIAANEIIAFF 585

Query: 617 QNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
              +N   +    E  LK        + +N++     K  +FTGTL+   R + +E + +
Sbjct: 586 AKEKNQKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|308450080|ref|XP_003088175.1| hypothetical protein CRE_02776 [Caenorhabditis remanei]
 gi|308249279|gb|EFO93231.1| hypothetical protein CRE_02776 [Caenorhabditis remanei]
          Length = 1202

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/813 (25%), Positives = 352/813 (43%), Gaps = 125/813 (15%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           +    IP+E    E AR E   L  EI  +   YY  +  ++ D++YD L  R +A+  A
Sbjct: 167 QNDSSIPVE---FEAARVEAEQLTAEIERYRAAYYSEATSLVSDAQYDELFHRLEALERA 223

Query: 62  FPDLARSEDPNGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           FP+LA     + P  ++G  +      +  H+   LSL+ ++++++ R++  +      +
Sbjct: 224 FPELAGQ---DSPTQEVGSAVASAGFPEHEHAERMLSLDNVFSLDEFREWAEKARASSGR 280

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
               ++ +  E KIDG  I + Y  G    A  RGDG  GED++  +  IP IPRVL   
Sbjct: 281 ----AVRWLTELKIDGLAIALAYRNGVLETATTRGDGRVGEDITENVDLIPVIPRVLEGE 336

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIA--------------------VGRKPYANPRNA 219
            IPE  E RGEV+++  +F ALN+   A                    V    +AN RN 
Sbjct: 337 GIPEFFEARGEVFLTTENFEALNERQHALQAEFAADQLAKGVPAEKITVRFPEFANARNT 396

Query: 220 ASGILRRLNPTDITR----------YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
           A+G LR+       R           L+ +VHG+G         Q +  + +   G PV+
Sbjct: 397 AAGSLRQRAEKKNERELELMRDRLGRLSLYVHGIGAWQHPDFANQSDAYELLSSWGLPVS 456

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
              R  ++   ++ +  +  + R    ++IDG+V K+DE  L ++LGE +R+PRW I++K
Sbjct: 457 PHSRVLDSVDEVLEFIEDRGAHRHDFEHEIDGIVIKIDELELHRELGETSRAPRWAIAYK 516

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           +  ++  T+LL I + +GRTG  TP A +EPV + G+ ++ ATLHN+  +K         
Sbjct: 517 YPPEEVYTKLLAIRVGVGRTGRATPYAVMEPVKVAGSTVSQATLHNQQVVKA-------- 568

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
              + + +GD V++++AG+VIP+V+  ++  R      +  P  CP C + +        
Sbjct: 569 ---KGVLIGDTVVLRKAGDVIPEVLGAVLERRDGSEVEWQMPVECPECGTEL-----RAM 620

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF-SIRIPA 508
            +     RC    AC AQ   R++H  SR   +IE LG+       + E P+   +   A
Sbjct: 621 KEGDIDLRCPNARACPAQVRGRVEHIGSRGGLDIEVLGEITAAALTQPEVPSVPPLETEA 680

Query: 509 DIFTLQRRQQTSTT---------------------------------------------- 522
            +F L   +    T                                              
Sbjct: 681 GLFDLTLEELVPITVVVRDSETGEPVIDEATGEPRRRSPFQRVTVEYPPEAEGMDATARR 740

Query: 523 ----KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
               + ++ +             + + +   L R I SL IRHVG   AR+LA ++ S  
Sbjct: 741 QAGFRKDHRVVRPSKDAETFLAELERAKTKPLWRLIVSLNIRHVGPVAARALADWFGSLD 800

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEV 632
                     A        L  V  VG IIA++++E+++   +   VE            
Sbjct: 801 ----------AIRAASVEELSAVDGVGGIIAESLLEWFEVDWHREIVERWTAAGVQWTTP 850

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                         +    +V TG+L    R  A+E + Q G   ++ +S+KTD +  G 
Sbjct: 851 GHPGPGAAVAEGGVLAGLTVVATGSLDGFTRDGAKEAIIQAGGKAASSVSKKTDFVAAGP 910

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             GSKL KA++LG+ +++  QF  L+ +    L
Sbjct: 911 GAGSKLAKAEELGIPVLDASQFAVLVSEGPAAL 943


>gi|26553637|ref|NP_757571.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2]
 gi|81748016|sp|Q8EWL9|DNLJ_MYCPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|26453643|dbj|BAC43975.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2]
          Length = 701

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/720 (29%), Positives = 366/720 (50%), Gaps = 66/720 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++    + +L + ++ ++  YY    P + D EYD   +    +   +P+    + PN P
Sbjct: 20  KEILNRIQNLRKNLNQYNYEYYGLENPSVSDYEYDMCLKELIQLETQYPEF---DSPNSP 76

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+GG ++    KV H IP +SL   ++ EDL KF   I +     D     + +EPKI
Sbjct: 77  SKKVGGYISEKFNKVKHEIPMMSLSNAFDEEDLLKFDNDIKKAIGSSD---FSYVVEPKI 133

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I+++Y+ G  + A  RGDG  GEDV+  I+ I ++P  L++   + +E+RGEV+++
Sbjct: 134 DGLSISVKYKDGNLIQAVTRGDGEIGEDVTQNIKTIKSLP--LNIEYDKDLEIRGEVFLT 191

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K DF  +N +      K +AN RNAASG LR L+      R L+   + + K +E+    
Sbjct: 192 KKDFEKINSDPNLT--KKFANARNAASGSLRNLDSNITAKRNLSALFYYVPKATELKIAK 249

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           QY++L  +     P++  +R  N   G++   +E+   R    YDIDG+V KV++F+  +
Sbjct: 250 QYDVLSWLDKQLIPISREIRHCNNIQGVIERISELTDTRDQFKYDIDGIVIKVNDFNHYE 309

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G  ++ P+W I++KF      T+L  ID+ +GRTG +  +A L+ + + G+ +  ATL
Sbjct: 310 EIGYTSKFPKWAIAYKFPAVVKQTKLNSIDVTVGRTGRINYIANLDEILLEGSQVKKATL 369

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN DYIK             +I + D V + +AGE+IPK++  I  +R      F  P+ 
Sbjct: 370 HNYDYIKD-----------HEIMLNDIVEIYKAGEIIPKIIRSIKEKRDGSQVVFPEPTN 418

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++V+              C     C  +Q++++++F SRDA NIEGL    +  
Sbjct: 419 CPSCDSKLVKKEQE------VDLYCLNE-NCVEKQIQQIEYFSSRDAMNIEGLSISIISQ 471

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--------------FGDVSVTNLY 539
            F+++     I    D++ L  +++      +                  F D S TN+ 
Sbjct: 472 LFRNKI----INDAIDLYELAHKKEILIATKQKFYRKNDDGTKTEFERSLFKDKSFTNII 527

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           ++I K ++ S+E+F+  LGI++VG   A++L+K + S +  A      I           
Sbjct: 528 EAIEKSKSNSMEKFLTGLGIKYVGLRAAKALSKRFKSIEELAMATREEIE---------- 577

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLV 653
           +VP  G+ +++++V ++ +P+N   +            ++       KN   +  NK  V
Sbjct: 578 QVPDTGEKMSESLVNWFSDPKNQDLLWRAKKVGINFNYINEFNDVVVKNEHQKYMNKTFV 637

Query: 654 FTGTLQKIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711
            TG+  K  R++ + Y+     A VS  +S+KTD ++VG+N G SKL+KA  L ++I+ E
Sbjct: 638 ITGSFNK-SRNEIKNYIESVFNAKVSDSVSKKTDYLVVGENAGDSKLKKANDLKIEIITE 696


>gi|294784746|ref|ZP_06750034.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27]
 gi|294486460|gb|EFG33822.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27]
          Length = 696

 Score =  638 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/711 (31%), Positives = 367/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +++  + + YY  +  +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H+ P LSL   +NI ++  FI RI +   K  +  + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPK--EQELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKGRGLDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPVCCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      + +   +C     C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLERE------EGLVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   ++ I+S
Sbjct: 484 ----LGYIKTVVDIFDLKEHREA----LENIDKMGKRSIENLLNSIEESKNRDYDKVIYS 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK             NI       +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIPFIGKVASKILAK----------ASKNIDKLMTMTFEELTSIEGIGEIAANEIIAFF 585

Query: 617 QNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  +N   +    E  LK        + +N++     K  +FTGTL+   R + +E + +
Sbjct: 586 KKEKNQKIIESLKEKGLKFEIKESETNVQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|254456450|ref|ZP_05069879.1| DNA ligase, NAD-dependent [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083452|gb|EDZ60878.1| DNA ligase, NAD-dependent [Candidatus Pelagibacter sp. HTCC7211]
          Length = 676

 Score =  638 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/710 (37%), Positives = 415/710 (58%), Gaps = 47/710 (6%)

Query: 18  RKELSSLEQE----ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +KE+  L QE    ++ ++  YY  +KP+I D  YD LK    ++   +  LA  + P+ 
Sbjct: 3   KKEIQKLYQEKIKLLNKYNQYYYDKNKPLIDDKNYDELKISILSLEKKYNFLASKKSPSE 62

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
                G + + +  K  H +P LSL   ++ EDL  F  +I  F  + ++  ++++ EPK
Sbjct: 63  IT---GYKPSKNFKKSAHKVPMLSLANAFSEEDLINFEKKILNFLSENENFKLYYSAEPK 119

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192
           IDG   ++ Y+ GKFV    RGDG  GED+++ +  I  IP+ +S  N PE I++RGEV+
Sbjct: 120 IDGISASLTYKNGKFVKGLSRGDGKEGEDITSNLETIKDIPKKISNKNFPEEIDIRGEVF 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFA 251
           I  +DF           +  +ANPRNAASG LR+ +P D ++  L F  +  G   ++  
Sbjct: 180 IKNSDF--------ENFKDKFANPRNAASGSLRQKDPNDTSKIPLKFIAYTFGYEKKLNI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q++ L+++   GF  N   +  +    ++  YNE++  R+ + +DIDG+VYKV+ F L
Sbjct: 232 DNQFDFLKRLNEWGFKTNPLNKLISGVKNLLINYNEIEKKRAEIDFDIDGIVYKVNNFKL 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK+LG  A +PRW ++HKF+  +A ++++ IDIQIGRTG LTPVA+++PVNIGG  ++NA
Sbjct: 292 QKRLGNVANAPRWAVAHKFSSNKAVSKIISIDIQIGRTGALTPVAKIKPVNIGGVQVSNA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED I             +D+RVGD V+V+RAG+VIP ++ + +N+R   +  F FP
Sbjct: 352 TLHNEDEI-----------MRKDVRVGDTVVVERAGDVIPHILTVDINKRSKKSIKFVFP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
             CP C S+  ++ N  T K  A  RCT  G  C    +E+LKHFVS++AFNIEGLGK+ 
Sbjct: 401 KKCPSCGSKTTKEYNEITKKNDAVRRCTSEGYECEKISIEKLKHFVSKEAFNIEGLGKKI 460

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F+K +     IR+P DIF L         +IEN+ G+G +SV NL  SIN+++NISL
Sbjct: 461 IENFWKLK----LIRLPQDIFRL------DYNRIENLEGWGRLSVENLKYSINEKKNISL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER I++LGIRH+G E A+ L+K++ ++ NF +  N        ++  L+ V  +G+    
Sbjct: 511 ERLIYALGIRHIGLENAKLLSKFFKTFSNFKELSNK------SNYNDLLNVDKIGETQVS 564

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I  F+ N  N   +  L KE+S      EK  +  ++N   + TG L  I R + +  +
Sbjct: 565 SIKSFFSNKINNEIINQLSKELSIKNTLIEKK-NGLLKNYTFMITGKLSGISRAEIKSLI 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            +      + +++K D +I+GD P   K+E A++L +KI+N+ QFL +L 
Sbjct: 624 EENSGSTVSSVTKKLDYLIIGDKPTKRKIETAKELRIKIINQSQFLKMLN 673


>gi|313904335|ref|ZP_07837713.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6]
 gi|313470885|gb|EFR66209.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6]
          Length = 670

 Score =  638 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/714 (28%), Positives = 348/714 (48%), Gaps = 63/714 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E + L+++I YH D YY   +P I D EYD L           PD      P+ P  KI
Sbjct: 4   EEYNRLKEKIDYHMDRYYNLDEPEISDYEYDQLMIALKKAEKEHPDWI---SPDSPSQKI 60

Query: 79  GGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG     +  KVTH +P LS+E +++ E +  ++T++             F++E KIDG 
Sbjct: 61  GGTAKREAGVKVTHRVPMLSIEDVFDKEAVTAWVTKVRDL-----HPDAVFSVETKIDGL 115

Query: 138 MITIRYEK------GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            +T+RYEK       K + A  RGDG  GEDV+     IP + + L L   + +E+RGEV
Sbjct: 116 SMTLRYEKVAGTDSMKLMLAETRGDGLVGEDVTLNALVIPDVQKTLKLPY-DYLEIRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y++  DF   N+E   +G+K  ANPRN A+G LR+L+ +    R L  FV  +      F
Sbjct: 175 YMTHEDFDRFNEEQERLGKKLAANPRNLAAGTLRQLDASITKERGLRMFVFNVQDAPAEF 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L  +   G       R       +++  +E+  +R+ LPYDIDG V K+++ +
Sbjct: 235 LADHSAALDALAACGVQTV-YHRNCVNATEVLAAIDEIAEMRADLPYDIDGAVVKINQTA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL------EPVNIG 364
            +      ++     I++K+  ++    + +I + +GRTG LT           +P  + 
Sbjct: 294 YRNDFPAGSKYSSGHIAYKYPPEERVVEMDEIIVNVGRTGKLTFTGSFHDAETGKPARLC 353

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ ATLHN+DYI  +            I VG    + ++GE+IPK+   +       
Sbjct: 354 GTSVSRATLHNQDYITEMS-----------IGVGGHYRLFKSGEIIPKLNGCVKEP---- 398

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              F  P  CP+C   ++R+ +       A  RC    +C AQ    + +F SR+  +I 
Sbjct: 399 ETVFVAPKTCPVCGHPLIREED------TADIRCVNP-SCPAQLSRTVAYFTSRNCMDIA 451

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG   ++   +       ++  ADI+ L+  +     K   I+G  + +   L D+I+ 
Sbjct: 452 GLGDTLVEALIRE----GYLKNYADIYKLRAYRDEMVEK--GIIG-KEKNTDKLLDAIDA 504

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +  R + +LGIR+VG+  A+ L K+Y S +  ++     +          +++P +
Sbjct: 505 SKKQNPARLLTALGIRNVGSSTAKELMKHYASIRELSKATAEEL----------VQLPDI 554

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G   A  IVEF+ +  N+  ++ L K     +   E+  S ++    +V TGTL  + R 
Sbjct: 555 GSTTAGDIVEFFSDSENLRMIDELEKSGVNMVVEKEEGGSDKLAGMTIVVTGTLPTLGRS 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+E + + G   +  +S+KT +++ G+  GSKL KAQ+LG+K+++E + L ++
Sbjct: 615 EAKELIEKNGGKCTGSVSKKTTLLVAGEAAGSKLTKAQELGIKVISEAELLAMI 668


>gi|303234054|ref|ZP_07320703.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4]
 gi|302494979|gb|EFL54736.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4]
          Length = 662

 Score =  638 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 198/711 (27%), Positives = 359/711 (50%), Gaps = 59/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +  +  L   ++ +   YY    P+I DSEYD L      +            PN P 
Sbjct: 2   EKQDRIKYLVDILNKYAYHYYTLDDPLIADSEYDVLYDELVNLEKE----TGIVLPNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
           N+IGGE+     K  H     SL K  + E++R ++ +   F +  ++N       + F 
Sbjct: 58  NRIGGEVLSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVENYNENHVNKLPKVEFY 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K DG  + + Y+ G  V A  RG+G  GE +++ ++ I +IP  L +    ++E++G
Sbjct: 118 VEFKFDGLTVDLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIP--LKIKDTRLMEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           E  +  +     N            N RNAA+G LR L+P     R L+ + + +    +
Sbjct: 176 EGVMPLSSLENYN----KTHEPKLKNARNAAAGALRNLDPAVTRERNLDAYFYNVNYLQD 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q EM++ +    F +    + A +F  I  + +E+  +R+ +    DG+V KV++
Sbjct: 232 NELETQEEMMKFLGDNYFKLYPYEKHATSFEEISKFIDEIFELRNEIDVLTDGVVIKVND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  +++LG   + PRW I++KF  ++ +T + +++  +GRTG +TP A LEPV IG   +
Sbjct: 292 FKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIGNVTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I+            + +R+   V V+R+ +VIP+++ ++ N    D +  
Sbjct: 352 KRATLNNIDDIER-----------KQVRLNSEVFVRRSNDVIPEIMGVV-NPDQEDTEEI 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P +CP C S + RD             C   ++C+ Q ++R+ HF SR+A NI+GL +
Sbjct: 400 GIPHYCPYCHSELFRD--------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNIDGLSE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L+   +      +I+   +I+ +++ Q         + GF +    NL ++I K +N+
Sbjct: 452 KTLEVLLEK----LNIKSIEEIYDVKKEQLM------QLDGFKEKKSQNLINAIEKSKNV 501

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FIF+LGI  +G + +  LA+ Y S+ N  +            +  LI++  +G++I
Sbjct: 502 DLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIEDIGNVI 551

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ IVEF+ +     ++++LL +      ++ +N+  +++N   V TG+L    R +  +
Sbjct: 552 AEEIVEFFHDETISNSIDSLLSKGIKI--KNPENIEKKLDNLTFVLTGSLVNYSRKELTD 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ LGA VS+ +S+ TD ++ G+  GSKL KA+ LGVK+M E++    L 
Sbjct: 610 KLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDELNSFLD 660


>gi|256846124|ref|ZP_05551582.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2]
 gi|256719683|gb|EEU33238.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2]
          Length = 696

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/711 (31%), Positives = 367/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +++  + + YY  +  +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H+ P LSL   +NI ++  FI RI +   K  +  + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPK--EQELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKGRGLDAYFYFLVEADKLDLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPVCCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      + +   +C     C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLERE------EGLVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   ++ I+S
Sbjct: 484 ----LGYIKTVVDIFDLKEHREA----LENIDKMGKRSIENLLNSIEESKNRDYDKVIYS 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK             NI       +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIPFIGKVASKILAK----------ASKNIDKLMTMTFEELTSIEGIGEIAANEIIAFF 585

Query: 617 QNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  +N   +    E  LK        + +N++     K  +FTGTL+   R + +E + +
Sbjct: 586 KKEKNQKIIESLKEKGLKFEIKESETNVQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|260495084|ref|ZP_05815213.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33]
 gi|260197527|gb|EEW95045.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33]
          Length = 696

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 217/711 (30%), Positives = 364/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +++  + + YY  +  +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H  P LSL   +NI ++  FI RI +   K  +  + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISK--EQELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   +   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEITSIVKTLPQAM--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADKLGFKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +            T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMRIKTTGIFELLETSKEIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  +R  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKSIKEDRTGNEKIIEEPVNCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      + +   +C     C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLERE------EGLVDIKCVNE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DI+ L+  +      +ENI   G  S+ NL +SI + +N   ++ I++
Sbjct: 484 ----LGYIKTVVDIYDLKNHR----ESLENIDKMGKKSIENLLNSIEESKNRDYDKVIYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK             NI       +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIAEIGKVTSKILAK----------ASKNIDKLMTMTFEELTSIDGIGEIAANEIIAFF 585

Query: 617 QNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  +N   +    E  LK        + +N++     K  +FTGTL+   R + +E + +
Sbjct: 586 KKEKNQKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|85057601|ref|YP_456517.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123725342|sp|Q2NJF5|DNLJ_AYWBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84789706|gb|ABC65438.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 671

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 230/706 (32%), Positives = 380/706 (53%), Gaps = 50/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++ SL ++++  +  YY  S P + D +YDAL +    + + +P       P  P  
Sbjct: 7   IKQKIKSLVKQLNKANYQYYNLSDPDLSDQQYDALIKELINLENHYPQFKL---PYSPTL 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           KIGG +      + H  P +SL  ++NIE+L+ F  RI +        +     E KIDG
Sbjct: 64  KIGGFVEKKFSTIKHKTPMMSLANVFNIEELKAFYDRIVKKIP-----TFSLLTELKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I+++Y+KG  V A  RG+G  GEDV+   + I TIP  L+ ++   +EVRGE+Y+S  
Sbjct: 119 VAISLKYQKGILVRALTRGNGIWGEDVTKNAQTIKTIPLRLNEDL--DLEVRGEIYLSHP 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           DF  LN +     +  ++NPRNAASG LR+LN   +  R L+ FV+G+     +    Q 
Sbjct: 177 DFEKLNAQRKQENKPLFSNPRNAASGTLRQLNSAVVAKRNLSIFVYGIAD-PYLTKPTQK 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L  +  LGF  N      + F  ++S   + KSI+  L YD DG+V K++E      +
Sbjct: 236 ETLVFLTALGFATNPHHYFVSNFENLLSVIEKYKSIKEQLTYDTDGIVIKINELVFHSLI 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++PRW  ++KFA   + + + +I  Q+GRTG++TPV  + PV + G+L++   LHN
Sbjct: 296 GATAKAPRWATAYKFATITSQSIIQNIIFQVGRTGVITPVCEIMPVMVDGSLVSKVFLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR+ D V+V +AG VIP+++++I ++R    +P      CP
Sbjct: 356 YDYI-----------CKKDIRIKDHVIVHKAGSVIPEILEVIKSKRTDLQKPTLMIEKCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C++ + +            + C     C  Q++++L HFVS++A +I  LG+Q +  FF
Sbjct: 405 SCKTILEKQPGGI------DYFCLNP-NCREQKIQKLIHFVSKNAMDINVLGEQTIITFF 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   I  P+D++ L+  Q      ++ I GFG   +TN+ D+I   +    E  +F
Sbjct: 458 DKN----LITKPSDLYLLKNHQHI----LQEISGFGAKKITNILDAIEASKQKGFEDVLF 509

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGI+H+G ++++ LAKY+ + +N  Q  ++ I           ++  +G  IAQ+I ++
Sbjct: 510 ALGIKHIGKKVSQVLAKYFQTIENLQQSTSDTI----------TQIREIGIKIAQSIQQY 559

Query: 616 YQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + N  N+  V  L K      S    +    +   NKK+V TGTLQK  R + Q+ + Q+
Sbjct: 560 FSNSCNLEEVTKLKKLGVSFQSTNSQKPTTQNIFTNKKIVLTGTLQKYSRLQIQQILEQM 619

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           GA+++  LS KT+ +IVG N GSKL KAQ+L + I+ E++   +++
Sbjct: 620 GAIITNSLSLKTNYLIVGINAGSKLTKAQKLQIPIIEEKELQQIIE 665


>gi|154148661|ref|YP_001406577.1| NAD-dependent DNA ligase LigA [Campylobacter hominis ATCC BAA-381]
 gi|166215571|sp|A7I236|DNLJ_CAMHC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|153804670|gb|ABS51677.1| DNA ligase, NAD-dependent [Campylobacter hominis ATCC BAA-381]
          Length = 645

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 227/702 (32%), Positives = 372/702 (52%), Gaps = 60/702 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
             E     + ++     YY    P+  D EYD L ++ +   + FPDL  S     P N+
Sbjct: 3   EAEYLKAVEMLNIWAKAYYTQDNPLATDIEYDVLYKKVETFENEFPDLKVSY---SPTNR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  ++    K+ H     S+E I++  +L  ++ R  +         + F +EPK DG 
Sbjct: 60  VGDAVSEGFEKINHKAKMWSMEDIFDDNELLAWLERGEKA-------GLEFFVEPKFDGA 112

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G  + A  RG+G +GE+V+  ++ I +IP  L ++  E IE+RGEV I+K+D
Sbjct: 113 SLNLTYENGVLISAGTRGNGETGENVTQNVKVINSIP--LQIDYKEKIEIRGEVVIAKSD 170

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F ALNDE    G   +ANPRNAA+G LR+L+   + +R+L FF   +G+ S +  K   E
Sbjct: 171 FDALNDERANSGENLFANPRNAAAGSLRQLDSAVVKSRHLKFFPWDVGENS-LNFKKHSE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +++ +R LGF  ++ VR   +   +   Y ++  +R      +DG+V +++E +  + +G
Sbjct: 230 IMEFVRNLGFLKDDFVRVCASLTDLRKAYVDLHEMRERKDILMDGMVIRINELTKCENMG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + PR+M+++KF   + +T+L+DI++Q+GRTG++TPV  LEPVNI GA + NATLHN 
Sbjct: 290 YTIKFPRFMVAYKFPPVEKATKLIDINLQVGRTGVITPVGVLEPVNIDGATVRNATLHNF 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L            +  GD V + R+G+VIPK+  +    R+    P   P FCP+
Sbjct: 350 DEIARL-----------GLMKGDIVSIIRSGDVIPKITGVFGARRNGSETPIKRPEFCPV 398

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C SR++ +            RC   L C A+ +  L +F S+   NI+GLG+  ++  F+
Sbjct: 399 CGSRLLVE--------DIFIRCQN-LTCKARIVNSLIYFCSKKCMNIDGLGEAIINTLFE 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   +DI+TL+              GF D  ++NL  SI   R   L RFI +
Sbjct: 450 KGK----IINISDIYTLKADDLEGLE------GFKDKKISNLLASIENSRISPLYRFITA 499

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   AR +A+ +   +N+           N  +  ++++   G+ +A++ V F 
Sbjct: 500 LGIEHIGEVAARKIAEIFG--ENWL----------NASFDEILKIDGFGEAMAKSFVGFC 547

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   +E LL  +  S  + E    +    K +V TGTL  I R + +E + ++GA 
Sbjct: 548 E--INREKIENLLSFLHLSAQKTE-ISQNVFTKKTVVITGTLS-ISRDEMKEKLIKMGAN 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V+  +S+KTD ++ G + GSKLEKA+ LGVK ++E++F  +L
Sbjct: 604 VTNSVSKKTDFVLFGKDAGSKLEKAKMLGVKAISEDEFKEML 645


>gi|228904740|ref|ZP_04068794.1| DNA ligase [Bacillus thuringiensis IBL 4222]
 gi|228854754|gb|EEM99358.1| DNA ligase [Bacillus thuringiensis IBL 4222]
          Length = 656

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 219/710 (30%), Positives = 358/710 (50%), Gaps = 56/710 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   R     L  E++  +  YY   KPI  D+EYD L      I    P+   +     
Sbjct: 1   MFDLRARYLHLVGELTMLNHHYYTMDKPIASDAEYDRLYDELVKIEELHPEWTVAH---S 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P N++GGE+     K  H++P  SLEK    + +RKF+  + R     +  +  FT+E K
Sbjct: 58  PSNRVGGEVLDKFEKKEHTMPLYSLEKSQTYDGVRKFVEDVKR-----EFPNATFTIEQK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG    +RY  G F     RG G  GE VS  I+ I +IP  L++    +IE RGEV++
Sbjct: 113 MDGLANVLRYSGGSFSEGRTRGTGKIGEIVSEQIKTIRSIP--LNIRFQGVIEPRGEVFM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
             + F A N  +   G  P  NPRN A+G LR L+P     R L+ F + +  +  I  +
Sbjct: 171 PISGFEAYNASLPE-GEAPLKNPRNGAAGALRNLDPRIAASRPLDAFWYDIAYSEGITFE 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q EM+  ++  GF +N      ++   I+    EMK +R TL +DIDG+V KV+E  ++
Sbjct: 230 TQAEMMTFLQEQGFKINPYFYVTDSIDVIIEKLEEMKEVRPTLNWDIDGMVIKVNELHIR 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  ++ P+W I++KF   + +T L  +  ++GRTG LTP+A LEPV+IGG  +T AT
Sbjct: 290 EELGYTSKFPKWAIAYKFEAVEETTTLNSVTWEVGRTGKLTPLAHLEPVDIGGTTVTKAT 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N D I             + ++VG  V V+R+ +VIP+++ I+      +      P+
Sbjct: 350 LNNYDDI-----------LRKGVKVGAEVFVRRSNDVIPEIMGIVEGS---EGTEIVPPT 395

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C++ +V+D         A  RC    +CSAQ + +  HF SR+A NI+   ++  +
Sbjct: 396 HCPECETVLVQD--------GAHLRCMNIDSCSAQSVGKFTHFASREAMNIDSFSEKTAE 447

Query: 493 FFFKSEDPAFSIRI-PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             F+    A  IR    D++ L R +     +      FG+     L  +I + ++ +LE
Sbjct: 448 QLFE----AGLIRNSFVDLYRLDRNELLKLDR------FGERKADRLLAAIEESKSRTLE 497

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FI++LG+RH G   A  L +YY +  + A          N     L+R+  +G  +AQ+
Sbjct: 498 AFIYALGMRHSGKGTAERLLRYYNNIDDIA----------NASVEDLMRIEDIGSAVAQS 547

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           I +++ N RN+  +E L             +  +++E    V TG + +  R + + ++ 
Sbjct: 548 IFDYFHNERNLQMIEELKALGLTLTHVAAVSSGNQLEGNTFVITGKVSRP-RKEIEAFIK 606

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           + G   S  +S+ T+ ++ G+  GSKL KAQ LGV ++ EEQ   ++ + 
Sbjct: 607 EHGGKASGSISKNTNYLVAGEAAGSKLAKAQSLGVTVITEEQLYKMVNEG 656


>gi|237802575|ref|YP_002887769.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/Jali20/OT]
 gi|231273809|emb|CAX10593.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/Jali20/OT]
          Length = 663

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 230/708 (32%), Positives = 369/708 (52%), Gaps = 51/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S  P   L  
Sbjct: 6   RDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYL-- 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G   +     V HS P LS+  ++++++L +F +R  +           ++LE KIDG 
Sbjct: 64  -GDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLGYSPG----YSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   ++   +  +E
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSHFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +LG
Sbjct: 237 NLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+
Sbjct: 297 LTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS CP+
Sbjct: 357 DEIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   F+
Sbjct: 406 CHEPVVKEK--------VSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKLFE 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   +DIF L  +        + + GF D S+ NL  SI   + ++L+R + +
Sbjct: 457 ----VGLISSCSDIFALTEKDL------KQVPGFKDRSIQNLLASIAGAKKVTLDRLLTA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L I  VG+  A +LA ++ +     +               L+ +  +G  +A +IV F+
Sbjct: 507 LSIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  LG  
Sbjct: 557 SKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           VS+ +S+ T  +I G   G KL+KAQ LG+ I NE + L +L   + +
Sbjct: 616 VSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLIILDAKSVS 663


>gi|32267302|ref|NP_861334.1| NAD-dependent DNA ligase LigA [Helicobacter hepaticus ATCC 51449]
 gi|81665265|sp|Q7VF74|DNLJ_HELHP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|32263355|gb|AAP78400.1| DNA ligase [Helicobacter hepaticus ATCC 51449]
          Length = 650

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 227/703 (32%), Positives = 365/703 (51%), Gaps = 57/703 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E  +  Q +      YY   +PI  D +YD+L  +        P L    D + P  ++
Sbjct: 4   QEYYTQVQILKKMAYHYYVLDEPIATDEQYDSLYHQIVRFEEENPHLI---DASSPTQRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G     S  K TH     SLE ++N ++L +++ RIY+ +         FT  PK DG  
Sbjct: 61  GDVPLESFSKNTHLERMWSLEDVFNYDELVEWVQRIYKSYP-----QATFTCSPKFDGAS 115

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y++GK V A  RGDG  GE V+   + I +IP  L +N  E IE+RGEV I+K DF
Sbjct: 116 LNLLYQEGKLVSATTRGDGVIGELVTHNAKTIQSIP--LEINYKEEIEIRGEVVIAKEDF 173

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N + ++     +ANPRNAA+G LR+L+      R L F   G+G    I  +  YE 
Sbjct: 174 EYINQDRLSENLSLFANPRNAAAGSLRQLDAKITAKRKLRFMPWGIG-AGLIRFESFYEA 232

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
              +  LGF     +    +   I + YN + S R+  P  +DG+V  +D+ + Q+QLG 
Sbjct: 233 FNTITRLGFAPVPFLSYCESIESIQNAYNVLFSQRNNYPIMLDGMVIMLDKIASQQQLGW 292

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             +SPR+  ++KF   + S+++L + +Q+GRTGI+TPVA L+PV I GA+I+ ATLHN  
Sbjct: 293 TIKSPRFACAYKFPAVEKSSKILSVSLQVGRTGIITPVAELKPVEIEGAMISRATLHNFS 352

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V++ R+G+VIPK++  +V  R    +  S P+ CP+C
Sbjct: 353 EIER-----------KDIRLGDEVIIIRSGDVIPKIIKPLVALRDGTQKVISKPTHCPVC 401

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
              ++ +            +C   L+C A+ +E + HF S+ A NI+GLG++ +   +++
Sbjct: 402 GEELLLE--------DIFIKCQN-LSCEARVIESIIHFASKKALNIDGLGEKIVIQLYEN 452

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +R   DI+ L  +Q  +        G+ +    NL  +I     + L RFI +L
Sbjct: 453 A----FVRNIKDIYALSIQQLLTLE------GWQEKRANNLIYAIQNTIGVELWRFINAL 502

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI H+G   ++ LA+ +     F  E++ I+            V   G+ +A ++VEF  
Sbjct: 503 GIEHIGEGASKKLAQKFG-LNVFELELSEIL-----------SVDGFGEEMAYSLVEF-- 548

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           N  N   +  LL  + P +   E + ++   NK +V TGTL +  R +  + +   GA +
Sbjct: 549 NHANKTLIAELLCIIKPKVELLEIDNNNVFFNKTIVLTGTLSQP-RDRIIKLLESKGAKI 607

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S+ +S+KTD +I G+  GSKLEKAQ L +  +NEE+FL  + +
Sbjct: 608 SSSVSKKTDFVIYGEKAGSKLEKAQSLNITTLNEEEFLAQINK 650


>gi|237804493|ref|YP_002888647.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231272793|emb|CAX09699.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 663

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 231/708 (32%), Positives = 368/708 (51%), Gaps = 51/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S  P   L  
Sbjct: 6   RDDYIALCAELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYL-- 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G   +     V HS P LS+  ++++++L +F +R  +           ++LE KIDG 
Sbjct: 64  -GDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLGYSPG----YSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   ++   +  +E
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSFKEAAKRKLDLSVYGL--ITDQKKRSHFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +LG
Sbjct: 237 NLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+
Sbjct: 297 LTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V V++ GEVIPK+V I + +R  ++ P+  PS CP+
Sbjct: 357 DEIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESGPWKMPSLCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   F+
Sbjct: 406 CHEPVVKEK--------VSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKLFE 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   +DIF L           + + GF D S+ NL  SI   + ++L+R + +
Sbjct: 457 ----VGLISSCSDIFALTEEDL------KQVPGFKDRSIQNLLASIAGAKKVALDRLLTA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L I  VG+  A +LA ++ +     +               L+ +  +G  +A +IV F+
Sbjct: 507 LSIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N   +   ++E+   +   + +  + ++ K  VFTGTLQ++ R +A+E +  LG  
Sbjct: 557 SKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVFTGTLQQMTRTQAEERIRSLGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           VS+ +S+ T  +I G   G KL+KAQ LG+ I NE + L +L   + +
Sbjct: 616 VSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILDAKSVS 663


>gi|305431677|ref|ZP_07400846.1| NAD-dependent DNA ligase LigA [Campylobacter coli JV20]
 gi|304445272|gb|EFM37916.1| NAD-dependent DNA ligase LigA [Campylobacter coli JV20]
          Length = 647

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 218/704 (30%), Positives = 356/704 (50%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +KE        +     YY+  +P+  D EYDAL R          D       + P  K
Sbjct: 3   KKEYLEKVALAASWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ +  N  E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVLEIDNIPKTI--NYKEKIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F K   E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTK-HSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ ++       ++  YNE+ S+R   P  +DG+V +VD+ +L K+LG
Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYNELLSLRDQKPMMMDGMVVRVDDLALCKELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  FK
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLFK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+       +  E + GF +  + N+ ++I + R+  L RFI +
Sbjct: 449 EKK----INTLESIFHLK------FSDFEGLEGFKEKKINNILNAIEQARDCELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ LA  +   +   Q +            +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLALSFGK-EWHKQSL-----------EAYANLEGFGEQMALSLCEF- 545

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            +  N   ++   K ++    + +    S I  K  V TG L +  R + +  +  LG  
Sbjct: 546 -SRVNSARIDEFYKLLNLKEQKVQIQEDSVIFGKTFVITGALSRP-RDEFKNLIESLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G   GSKL+KAQ+LGVK ++E +F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGQEAGSKLDKAQELGVKCIDENEFNELIEK 647


>gi|255310946|ref|ZP_05353516.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276]
 gi|255317247|ref|ZP_05358493.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276s]
 gi|296435662|gb|ADH17836.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9768]
 gi|296436585|gb|ADH18755.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11222]
 gi|296437522|gb|ADH19683.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11074]
 gi|297140021|gb|ADH96779.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9301]
          Length = 663

 Score =  635 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 231/708 (32%), Positives = 367/708 (51%), Gaps = 51/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S  P   L  
Sbjct: 6   RDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYL-- 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G   +     V HS P LS+  ++++++L +F +R  +           ++LE KIDG 
Sbjct: 64  -GDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLGYSPG----YSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   +E   +  +E
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITEQKKRSHFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF V    +Q  +   +V    E++ +R  LP  IDG+V KVD  + Q +LG
Sbjct: 237 NLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRVALPMAIDGVVIKVDNIAHQDRLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+
Sbjct: 297 LTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS CP+
Sbjct: 357 DEIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   F+
Sbjct: 406 CHEPVVKEK--------VSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKLFE 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   +DIF L           + + GF D S+ NL  SI   + ++L+R + +
Sbjct: 457 ----VGLISSCSDIFALTEEDL------KQVPGFKDRSIQNLLASIAGAKKVTLDRLLTA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L I  VG+  A +LA ++ +     +               L+ +  +G  +A +IV F+
Sbjct: 507 LSIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  LG  
Sbjct: 557 SKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           VS+ +S+ T  +I G   G KL+KAQ LG+ I NE + L +L   + +
Sbjct: 616 VSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILDAKSVS 663


>gi|170739961|ref|YP_001768616.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46]
 gi|254781369|sp|B0UQ51|DNLJ_METS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168194235|gb|ACA16182.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46]
          Length = 827

 Score =  635 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 263/657 (40%), Positives = 378/657 (57%), Gaps = 50/657 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M  +   P+E ++ E+AR    +L  EI+ HD  Y+    PII D+ YD+L+RR +AI  
Sbjct: 1   MAAQTTRPVEEITAEEARAAHEALSAEIAEHDRRYHGEDAPIISDAAYDSLRRRLEAIEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDLA +   +     +G + +    KV H++P LSL   +  E++ +F+ R+ RF   
Sbjct: 61  RFPDLAGTGAASA---SVGAKASDKFAKVRHAVPMLSLGNAFADEEIEEFVERVRRFLGL 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179
               S+  T EPKIDG  +++RYE G+ V AA RGDG  GEDV+A +R I  +P  L   
Sbjct: 118 PASESLAVTAEPKIDGLSLSLRYEGGRLVTAATRGDGEVGEDVTANVRTIREVPERLAGP 177

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           ++PEI EVRGEVY+S  DF A+N      G+  +ANPRNAA+G LR+L+P+   +R L F
Sbjct: 178 DVPEICEVRGEVYLSHADFAAINARQEEAGKPLFANPRNAAAGSLRQLDPSITASRPLRF 237

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +  G+ S   A+ Q  ++   R  G PVN    +  +   ++++Y  +++ R+ L YD
Sbjct: 238 FAYAAGEMSTWPAETQSGLIAAFRRFGLPVNPRTTRCTSVAEMLAHYRAIETERADLGYD 297

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD F+LQ++LG  AR+PRW ++HKF  ++A T +  I+I +GRTG L P+ARL
Sbjct: 298 IDGVVYKVDSFALQRRLGFVARAPRWALAHKFPAQRAVTTIEAIEINVGRTGSLNPLARL 357

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMR------------------GGRDIRVGDR 400
            PV +GG +++NATLHNEDY++G+DA G  +R                   G D+RVGD 
Sbjct: 358 RPVTVGGVVVSNATLHNEDYVRGIDADGTPIRSGINIWDGFALRTDVDLSRGSDVRVGDT 417

Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG 460
           V+V RAG+VIPKV D+++  R  DA P+ FP  CP C S  VR  NP+TGKL +  RCTG
Sbjct: 418 VVVLRAGDVIPKVADVVLERRPADAVPYRFPEICPACGSHAVRSYNPRTGKLDSVRRCTG 477

Query: 461 GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ------ 514
           GL C AQ  ERLKHFVSR+A +IEG G+  +   F+    A  +R PAD+F L       
Sbjct: 478 GLICPAQGQERLKHFVSRNALDIEGFGETSITTLFE----AGLVRQPADLFRLDFAPLKA 533

Query: 515 ----RRQQTSTTK------------IENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
               RRQ  S  +             +      D ++ NL  ++  RR + L RFIF+LG
Sbjct: 534 AIVARRQALSAERALASGKAPEARKTKAKASEEDKAIRNLLAAVEARRVVPLNRFIFALG 593

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN-NDDWLSLIRVPLVGDIIAQAIVE 614
           I  VG   A++LAK++       + +    AH    DW+ L  +  VG    + ++ 
Sbjct: 594 IEQVGEATAKALAKHFPDMPALMEGVRAAAAHQPGPDWVGLAALNRVGPTTRERLLA 650



 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 106/251 (42%), Gaps = 27/251 (10%)

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIP----------ADIFTLQRRQQTSTTKIENILG 529
           A  IE +G+       K      ++              D   L    +   T  E +L 
Sbjct: 591 ALGIEQVGEATAKALAKHFPDMPALMEGVRAAAAHQPGPDWVGLAALNRVGPTTRERLLA 650

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI-I 588
             +   T+L       R               + A    +L + Y S +     +     
Sbjct: 651 AAEAGETDLLAEGTVAR---------------LSAAQKEALLEAYGSPEGVRAAVMRACR 695

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
               D +  L     +G +   ++++F+    N+ AVEALL +V  +        ++   
Sbjct: 696 QRPGDAYRHLADDSEIGAVTTASLIQFFSEAHNVAAVEALLAQVR-TERAAPPAAAAAFS 754

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            + +VFTG+L+++ R +A+    +LGA VS  +S KTD+++ G   G+KL+ A++ GV++
Sbjct: 755 GRTVVFTGSLERMTRSEAKATAERLGAKVSGSVSAKTDLVVAGPGAGTKLKDAEKHGVRV 814

Query: 709 MNEEQFLFLLQ 719
           ++E ++L +++
Sbjct: 815 ISEAEWLAMVE 825


>gi|262066346|ref|ZP_06025958.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693]
 gi|291379910|gb|EFE87428.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693]
          Length = 696

 Score =  635 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 222/711 (31%), Positives = 370/711 (52%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L++++  + D YY  ++ +I D E+D L +  +++   +P+   +   + P   +
Sbjct: 29  ERIVKLKEDLDKYRDSYYNDNESLISDYEFDILLKELESLEEKYPEYKEA---SSPTASV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H+ P LSL   +NI ++  FI RI +   K++   + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHAHPMLSLANSYNIGEVVDFIERIKKRISKEE--ELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I ++ + L   I   IE+RGE+ +    
Sbjct: 144 SISLTYVQGKLVRAVTRGDGFIGEDVTENILQIASVVKTLPQAI--DIEIRGEIVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+P  +  R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDPKIVKERALDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G               I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SMKFLESMGIKTTGIFELLENSKDIEQRIDYWEKERENLPYETDGLVIKVDEINLWDEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKIIEEPINCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      + +   +C     C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CDHKLERE------EGLVDIKCVNE-ECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DI+ L+  +      +ENI   G  S+ NL +SI + +N   ++ I++
Sbjct: 484 ----LGYIKTVVDIYDLKTHR----EDLENIDKMGKRSIENLLNSIEESKNREYDKVIYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK             NI    +  +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIPFIGKVASKVLAK----------ASKNIDKLMSMTFEELTAIEGIGEIAANEIIAFF 585

Query: 617 QNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  +    V    E  LK          +N++     K  +FTGTL+   R + +E + +
Sbjct: 586 KKEKTQKLVAALKEKGLKFEITESETKVENLNPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|329889238|ref|ZP_08267581.1| DNA ligase, NAD-dependent [Brevundimonas diminuta ATCC 11568]
 gi|328844539|gb|EGF94103.1| DNA ligase, NAD-dependent [Brevundimonas diminuta ATCC 11568]
          Length = 774

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 260/602 (43%), Positives = 358/602 (59%), Gaps = 28/602 (4%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+E L+  QAR+EL  L  E++ HD  YY  + P I D++YD LKRR  A+  AFP L
Sbjct: 5   FTPVETLTEAQAREELDRLSAELARHDALYYADAAPEISDADYDELKRRALALEAAFPAL 64

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           +    P  P  ++G  ++    +V H +P LSL+  ++  ++R F+ RI RF +   D  
Sbjct: 65  SG---PISPSQRVGAPVSTQFAEVRHGVPMLSLDNAFDEGEVRDFVARIARFLKLPGDEP 121

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEI 184
           I F  EPKIDG   ++RYEKG  V  A RGDG +GEDV+A +R + +IP+ L     P++
Sbjct: 122 IAFVAEPKIDGLSASLRYEKGVLVQGATRGDGKTGEDVTANLRTLDSIPQTLAGSGWPDV 181

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           IE+RGEVY     F A N    A G++ YANPRN A+G LR+ +P     R L FF +  
Sbjct: 182 IEIRGEVYAPNAAFDAFNAAAEAEGKRTYANPRNFAAGSLRQKDPKITALRPLTFFAYAW 241

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+TS  FA+ Q   L+  R  GF VN+   +     G++  Y  +++ RS L YDIDG+V
Sbjct: 242 GETSAPFAETQAGALEAFRSWGFQVNDRSARVEGADGLIGVYQTLETDRSRLGYDIDGVV 301

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD    Q++LG  ARSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL PV +
Sbjct: 302 YKVDRLDWQQRLGFIARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHPVTV 361

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++ NATLHNED I             +D+RVGD V+++RAG+VIP++V ++   R  
Sbjct: 362 GGVVVRNATLHNEDEIAR-----------KDVRVGDTVVLQRAGDVIPQIVGVVETLRPD 410

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DAQP+ FP+ CP+C S  VR+ +          RCTGGL C AQ +ERLKHFVSR AF+I
Sbjct: 411 DAQPYIFPTVCPVCGSEAVREGDE------VKRRCTGGLICDAQIVERLKHFVSRRAFDI 464

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++QL  F         I+ PADIF L  R +     +    G+G+ SV NL   I+
Sbjct: 465 EGLGEKQLIAFHAR----GWIKEPADIFRL-ARDEEKLALLRAEDGYGETSVGNLIAGID 519

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVP 602
            RR ISL+R IF LG+R +G + +  L++ + S+  F    +       +DDW +L    
Sbjct: 520 ARRVISLDRLIFGLGVREIGEQTSLVLSRAFGSWTAFRDACMAAASGLASDDWKTLAATH 579

Query: 603 LV 604
            +
Sbjct: 580 AI 581


>gi|255348508|ref|ZP_05380515.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70]
 gi|255503049|ref|ZP_05381439.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70s]
 gi|255506721|ref|ZP_05382360.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D(s)2923]
 gi|296434735|gb|ADH16913.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/150]
 gi|296438453|gb|ADH20606.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/11023]
          Length = 663

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 231/708 (32%), Positives = 369/708 (52%), Gaps = 51/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD CYY  ++P I D  YD   R    I    P+   S  P   L  
Sbjct: 6   RDDYIALCTELVEHDRCYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYL-- 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G   +     V HS P LS+  ++++++L +F +R  +           ++LE KIDG 
Sbjct: 64  -GDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLGYSPG----YSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   ++   +  +E
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSHFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +LG
Sbjct: 237 NLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+
Sbjct: 297 LTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS CP+
Sbjct: 357 DEIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   F+
Sbjct: 406 CHEPVVKEK--------VSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKLFE 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   +DIF L           + + GF D S+ NL  SI   + ++L+R + +
Sbjct: 457 ----VGLISSCSDIFALTEEDL------KQVPGFKDRSIQNLLASIAGAKKVALDRLLTA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L I  VG+  A +LA ++ +     +               L+ +  +G  +A +IV F+
Sbjct: 507 LSIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  LG  
Sbjct: 557 SKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           VS+ +S+ T  +I G   G KL+KAQ LG+ I NE + L +L   + +
Sbjct: 616 VSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILDAKSVS 663


>gi|304405678|ref|ZP_07387337.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9]
 gi|304345717|gb|EFM11552.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9]
          Length = 689

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 197/718 (27%), Positives = 329/718 (45%), Gaps = 65/718 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L  EI  H   YY   +P I D+E+D L     A+             + P  ++
Sbjct: 20  ERMRKLADEIERHSYSYYTLDRPTISDAEFDKLYDELVALEKT----IGIVLEHSPTQRV 75

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ--------KKDDNSIFFTL 130
           G E+     +  H     SL+K  N+EDLR +  R+ +           +       + L
Sbjct: 76  GNELLKGFDQHRHRARLWSLDKAQNVEDLRAWNQRVQKGINDWNSKHPDETPLPEPSYVL 135

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K DG  + + YE G+ + AA RG+G  GE + A ++ I ++P  +      I+EV+GE
Sbjct: 136 ELKYDGLTLNLTYENGRLIQAATRGNGVVGEGILAQVKTIRSVPLTIPFRD-GIVEVQGE 194

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
             ++ +   A N         P  N RNAA+G LR  NP     R LN F + +G    +
Sbjct: 195 GIMNLSVLEAYNQTAEE----PLKNARNAAAGALRNQNPKITAERKLNAFFYNIGHAEGV 250

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K   ++ Q +    F VN  V   ++   +      +  +R TL Y IDG V K+ + 
Sbjct: 251 SFKTHQQLQQFLIENKFKVNPYVTYHDSMESVEEELLRVTEMRPTLDYLIDGAVVKLVDM 310

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             ++ LG   + PRW ++ KF  ++ +T L  +  ++GRTG +TPVAR+EPV + G  + 
Sbjct: 311 RTREALGYTDKFPRWAVAFKFEAEETTTVLESVSWEVGRTGKITPVARVEPVELAGVTVQ 370

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           N TL+N   I   +             +G RV ++R+ +VIP+++    +E   +     
Sbjct: 371 NCTLNNMGDIDRKNLKHA---------LGTRVFIRRSNDVIPEILGKADDE---EGTEIE 418

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            PS CP C + + +          A   C   L C  Q + R+ HF SRDA +IE     
Sbjct: 419 VPSACPSCGTALEQR--------GAHLFCNNKLGCKPQMIGRITHFASRDAMDIETFSVM 470

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
             +  ++       +R PAD++TL         +      FG+     L ++  K ++  
Sbjct: 471 TAEQLYEECG----VRDPADLYTLGYDDLIKLER------FGERKAQKLIEAFEKSKSRD 520

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L  F+F+LGI + G    + LA ++ S     Q               L+++P +G I+A
Sbjct: 521 LAAFLFALGIPNTGKATTKVLADHFGSLDAVLQATEE----------QLVQLPDIGGIVA 570

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR------HEKNVSSEIENKKLVFTGTLQKIQR 663
            +IV F+ +P    ++  + ++   +           + V +    K +V TGTL  + R
Sbjct: 571 DSIVSFFADPLMQASISKMREQGVRAEAEIRRVPSAIEGVDNVFTGKTVVLTGTLSTMTR 630

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720
            +A + +  LGA V+  +S+KTD +I G++ GSKL KAQ LG+ ++ +E  F  +L +
Sbjct: 631 DEAAKKLEALGAKVTGSVSKKTDFVIAGESAGSKLTKAQSLGIAVIEDEALFKQMLGE 688


>gi|294783065|ref|ZP_06748389.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA]
 gi|294479943|gb|EFG27720.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA]
          Length = 696

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 222/711 (31%), Positives = 368/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L++++  + D YY  ++ +I D E+D L +  +++   +P+   +   + P   +
Sbjct: 29  ERIVKLKEDLDKYRDSYYNDNESLISDYEFDILLKELESLEEKYPEYKEA---SSPTESV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H  P LSL   +NI ++  FI RI +   K  +  + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHEHPMLSLANSYNIGEVVDFIERIKKRISK--EQELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I ++ + L   I   IE+RGE+ +    
Sbjct: 144 SISLTYIQGKLVRAVTRGDGFIGEDVTENILQIASVVKTLPQAI--DIEIRGEIVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E +  G + +ANPRNAASG LR+L+P  +  R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNKERLEKGEELFANPRNAASGTLRQLDPEIVKERALDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G               I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SMKFLESMGIKTTGIFELLENSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWDEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKTIEEPINCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      + +   +C     C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLERE------EGLVDIKCVNE-ECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DI+ L+  +     ++ENI   G  S+ NL +SI + +N   ++ I++
Sbjct: 484 ----LGYIKTVVDIYDLKNHR----EELENIDKMGKRSIENLLNSIEESKNREYDKVIYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK             NI    +  +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIPFIGKVASKVLAK----------ASKNIDKLMSMTFEELTSIEGIGEIAANEIIVFF 585

Query: 617 QNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  +    V    E  LK          +N++     K  +FTGTL+   R + +E + +
Sbjct: 586 KKEKTQKLVAALKEKGLKFEIAESEIKVENLNPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|223039682|ref|ZP_03609968.1| DNA ligase, NAD-dependent [Campylobacter rectus RM3267]
 gi|222879065|gb|EEF14160.1| DNA ligase, NAD-dependent [Campylobacter rectus RM3267]
          Length = 647

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 224/703 (31%), Positives = 349/703 (49%), Gaps = 60/703 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +KE       ++     YY    PI  D EYD L  +      A P          P  +
Sbjct: 3   KKEYLEAVDTLNAWAKAYYTDDAPIATDEEYDELYHKVLEFERANPGDI---SMFSPTKR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE++    K  HS+   S+E I++ E+L  ++ R        D   + F L+PK DG 
Sbjct: 60  VGGEVSDGFVKARHSVRMWSMEDIFSFEELLAWLKR-------GDKEGLEFALQPKFDGA 112

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G  V A  RGDG +GEDV++  + I  IP  ++ N    IE+RGEV I+KND
Sbjct: 113 SLNLLYENGALVRAITRGDGITGEDVTSNAKVIKNIPLQIAYN--GRIEIRGEVVIAKND 170

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N      G    +NPRNAA+G LR+L+     +R L F   G G+   +  +   +
Sbjct: 171 FDEINFARAQRGEPQLSNPRNAAAGSLRQLDSAVTASRRLRFKPWGYGE-QNLGLETYSQ 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           M+  +   GF      +   T   I   Y ++ + R + P+ +DGLV +V   +  ++LG
Sbjct: 230 MMDFIYSQGFEREEFFKICRTAEQIEEAYKQLVAQRDSKPFMMDGLVVRVQSIAASEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M+++KF   + +TRLLD+  Q+GR+G++TPV  LEPVNI GA + +ATLHN 
Sbjct: 290 YTEKFPKFMVAYKFPAIEKTTRLLDVAFQVGRSGVVTPVGVLEPVNIDGATVKSATLHNF 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            ++ GD + + R+G+VIPK+  +    R     P   P  CP+
Sbjct: 350 DEIERL-----------GVQKGDFISIIRSGDVIPKITGVFKQRRDGSQMPIERPRECPV 398

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++              +C   L C A+ +  L HF S+   NI+GLG+  ++  F+
Sbjct: 399 CGSMLL--------DEGVFVKCQN-LECKARVINSLIHFASKKCLNIDGLGEAIVNQLFE 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L  +   S        GF D  + NL  +I   R  +L  FI S
Sbjct: 450 ----AGLVAKIADIYELTAQDLASLE------GFKDKKIANLLGAIEASRTPALHSFIAS 499

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ +A+ Y   QN+ +     +A           +   G+ +A++  EF 
Sbjct: 500 LGIEHIGEVAAKKIAQIYP--QNWRELSFGEVAA----------IEGFGEAMAESYAEFM 547

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q   N   ++ +L+ VSP    +E    S I  K  V TGTL K  R + +  +   GA 
Sbjct: 548 QV--NRQNLDEILRFVSPQAQIYETK-QSAISGKTFVITGTLSK-SRDEFKRVLEANGAK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KTD ++ GD  GSKL+KA++LGVK + E++   +++
Sbjct: 604 VSGSVSKKTDFVLYGDEAGSKLDKARELGVKAITEDELRRMIE 646


>gi|88608555|ref|YP_506384.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama]
 gi|123736355|sp|Q2GDR2|DNLJ_NEOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|88600724|gb|ABD46192.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama]
          Length = 670

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 248/716 (34%), Positives = 396/716 (55%), Gaps = 51/716 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A+KE+  L +++  H+  YYQ   P I D+EYD++K R   +  A P L          
Sbjct: 2   EAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKDRYLKLLEANPSLGFPVV----- 56

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G   +    KV H  P LSL  I++ E+L ++I +  RF   K  +++ F  EPKID
Sbjct: 57  --VGYPASEKFQKVKHLSPMLSLRNIFSEEELVEYIEKTKRFLNLK--SALEFLCEPKID 112

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G   + RY  GK V  A RGDG  GE++   ++ I   P  + +++P+++EVRGEV++  
Sbjct: 113 GVSFSARYVNGKLVSCATRGDGKIGENIIDNMKVINGFPIEI-MDVPDLLEVRGEVFLDH 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
           + F  L         + ++NPRNAA+G LR+LNP     R L +F +   K   I  + Q
Sbjct: 172 DTFQTL---------EGFSNPRNAAAGSLRQLNPEITNERNLQYFAYSASKIDGI--EHQ 220

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            ++L  +   GF  N     ++    I+S+Y+ +   RS + YDIDGLVYKV++  L  +
Sbjct: 221 EDVLHFLSGRGFMTNPLRLASSKVPEIMSFYDSVYRRRSQIKYDIDGLVYKVNDLKLHAR 280

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  + +PRW I+HKF   +A T L  I + +GRTGI+TPVA L+P+ IGG +I+ A+L+
Sbjct: 281 LGTLSDAPRWAIAHKFPSHRAKTILEKIKLSVGRTGIITPVAHLKPITIGGVVISRASLY 340

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +DIR GD V+V+RAG+VIPKV+++ ++ R    + F FP  C
Sbjct: 341 NEDELER-----------KDIREGDLVIVERAGDVIPKVLEVDISYRTNQER-FIFPDKC 388

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S ++R  N       AA RC     C  Q ++++KH VS  AF+I+G+G   + FF
Sbjct: 389 PSCSSTLIRKNNE------AATRCNNSKKCPEQVIQQIKHLVSAQAFDIDGIGTSHISFF 442

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       I  PADIF L + +     +I+   G+G+ SV N+  +I   R ISLE+FI
Sbjct: 443 IEK----GFISEPADIFRLDKHR----DEIKKYDGWGEKSVENILKNIKNSRKISLEKFI 494

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           FSLGI+++G + A  LA+ + S+ N+  ++ +++  +      +  +  +G  I +++++
Sbjct: 495 FSLGIKNIGEKTAYMLAQQFKSFANWFDKM-SMLKDDTQTEDEIRNLDGMGSCICESLLD 553

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+ +  N   V++L   V   I  H  N+   +  KK VFTGTL  I R +A+E + + G
Sbjct: 554 FFSDSDNCNMVKSLSNHV--MITDHTVNIGGSLSGKKFVFTGTLLSITREEAKEIIKKAG 611

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
            +V   +S++ D ++ G+  GSKL KA +LG+ I+ E+  +      NT     + 
Sbjct: 612 GIVVNSISKQIDYVVAGEKAGSKLAKANELGIAIIEEKTLIEFTNGNNTPALKKET 667


>gi|76788861|ref|YP_327947.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis A/HAR-13]
 gi|123731251|sp|Q3KMM3|DNLJ_CHLTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76167391|gb|AAX50399.1| NAD-dependent DNA ligase [Chlamydia trachomatis A/HAR-13]
          Length = 663

 Score =  633 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 231/708 (32%), Positives = 370/708 (52%), Gaps = 51/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD CYY  ++P I D  YD   R    I    P+   S  P   L  
Sbjct: 6   RDDYIALCTELVEHDRCYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYL-- 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G   +     V HS P LS+  ++++++L +F +R  +           ++LE KIDG 
Sbjct: 64  -GDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLGYSPG----YSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   ++   +  +E
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSHFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +LG
Sbjct: 237 NLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+
Sbjct: 297 LTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS CP+
Sbjct: 357 DEIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   F+
Sbjct: 406 CHEPVVKEK--------VSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKLFE 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   +DIF L           + + GF D S+ NL  SI   + ++L+R + +
Sbjct: 457 ----VGLISSCSDIFALTEEDL------KQVPGFKDRSIQNLLASIAGAKKVALDRLLTA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L I  VG+  A +LA ++++     +               L+ +  +G  +A +IV F+
Sbjct: 507 LSIPFVGSSGAIALADHFVTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  LG  
Sbjct: 557 SKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           VS+ +S+ T  +I G   G KL+KAQ LG+ I NE + L +L   + +
Sbjct: 616 VSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILDAKSVS 663


>gi|254458916|ref|ZP_05072339.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1]
 gi|207084187|gb|EDZ61476.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1]
          Length = 653

 Score =  633 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 205/711 (28%), Positives = 364/711 (51%), Gaps = 62/711 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E  +K +    ++++ +   YY    PI  D  YD L            +       
Sbjct: 1   MNLEDYKKAV----EQLNLYSHHYYVLDDPITTDEVYDKLYHEVVRFEENNKNAVLY--- 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G  ++    K +H     SLE I++ E L K++T+ Y+      D++I F  E
Sbjct: 54  SSPSQRVGDAVSSGFTKASHLSRMWSLEDIFDSEGLEKWLTKTYKL-----DSNISFYCE 108

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  + + YE G+ V    RGDG  GE ++  ++ I +IP  L++   E IE+RGEV
Sbjct: 109 PKFDGASLNLVYENGELVQGITRGDGSVGELITQNVKTIRSIP--LTIAHKERIEIRGEV 166

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I K++F  +N+  +  G   +ANPRNAA+G LR+L+ +   +R L F  +G+G+ S + 
Sbjct: 167 VIFKDEFDKINEARLKAGEAVFANPRNAAAGSLRQLDSSITASRNLVFLPYGVGEDS-LE 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   + +  +  LGF           +  I + Y  MK+ R + P  +DG+V KV+E +
Sbjct: 226 YKLLSDKMAYIYELGFRKPPASSTCKGYDEIEAIYEVMKNDRDSYPMMLDGMVIKVNEIA 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  +G   ++PR+ +++KF   +  T +  I +Q+GR+G +TPVA++EP +I G ++  
Sbjct: 286 SQIDMGYTVKNPRFSVAYKFPAVEKITTIRAIVLQVGRSGAVTPVAQVEPTDIDGVVVER 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I             +DIR+ D+V++ R+G+VIPK++ ++ +ER     P+  
Sbjct: 346 ATLHNFDEIDR-----------KDIRLNDKVIILRSGDVIPKIIKVLTHERDGSEVPYER 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S ++              +C   L C A+ +  + +F S+   NI+GLG + 
Sbjct: 395 PTLCPVCDSELL--------DEGVLLKCQN-LECEARVVNSIIYFASKPCLNIDGLGNKI 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F S      ++   D+F L         K+  + GF +    NL +S+   +    
Sbjct: 446 VEALFVS----GLVKSVVDLFDLT------LDKLLALEGFKEKKSQNLLNSLEAAKGCDY 495

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI SLGI HVG   +++L++ + S         + I    ++ ++      +G+ +A+
Sbjct: 496 WRFINSLGIEHVGEVASKTLSENFGS---------SFIDATKEEIVAC---DGIGEEMAE 543

Query: 611 AIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +++EF +   N   +  L + + P    +  + V +  + K  V TGT+ +  R   +E 
Sbjct: 544 SVLEFVRV--NRETILNLQEILKPLEPVQKAEAVENPFKGKTAVLTGTMSE-SRGAIKEM 600

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + + GA VS  +S+KTD +I G++ GSK +KA  LGV+ + E++    + +
Sbjct: 601 LEEFGAKVSGSVSKKTDFLIYGEDAGSKYDKAMSLGVECLTEDEMRSKISE 651


>gi|237742800|ref|ZP_04573281.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13]
 gi|229430448|gb|EEO40660.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13]
          Length = 696

 Score =  633 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 219/711 (30%), Positives = 363/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +++  + + YY  +  +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H+ P LSL   +NI ++  FI RI +   K  +  + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPK--EQELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    N  +  R  LPY+ DGLV KVDE  L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKEIEMRINYWEKERENLPYETDGLVIKVDEIHLWDEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L D+  Q+GRTG LTPVA  + V + G+ +  A+LHN 
Sbjct: 322 YTSKAPRWAIAYKFPALQISTVLNDVAWQVGRTGKLTPVALFKEVELAGSKVERASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +K+A E+IP+VV  I  +R  + +    P+ CP+
Sbjct: 382 SEIQK-----------KDIRIGDRVFIKKAAEIIPQVVKAIKEDRTGNEKIIKEPTHCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      + +   +C     C  +    +++FVS+DA NI GLG + ++ F  
Sbjct: 431 CNHKLERE------EGLVDIKCVNE-ECPGKNQAEIEYFVSKDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DIF L+  +      +ENI   G+ S+ NL +SI + +N   ++ I S
Sbjct: 484 ----LGYIKTVVDIFDLKNHK----EDLENIDKMGERSIENLLNSIEESKNRDYDKVICS 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG+  +G   +++LAK             NI       +  L  +  +G   A  I+ F+
Sbjct: 536 LGMPLIGKVASKALAK----------ASKNIDKLMTMSFEELTSIDGIGKKAANEIIAFF 585

Query: 617 QNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
              +N   +    E  LK        + +N++     K  +FTGTL+   R + +E + +
Sbjct: 586 TKEKNQKIIQGLKEKGLKFEIKESETNVQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|71082725|ref|YP_265444.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123775550|sp|Q4FPL3|DNLJ_PELUB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71061838|gb|AAZ20841.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 676

 Score =  633 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 256/709 (36%), Positives = 401/709 (56%), Gaps = 45/709 (6%)

Query: 20  ELSSLEQ--EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           E+  L++      H+  YY  +KPI+ D E+D LK+    +   +      +    P   
Sbjct: 7   EIEYLKKIDLFQRHNKHYYDKNKPIVSDQEFDLLKKDIIDLERKY---KFLKSEYSPTKS 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IG + + +  K+ H +P LSL   +N EDL+ F  +I  F   KD N+I ++ EPKIDG 
Sbjct: 64  IGFKPSKNFQKIKHKVPMLSLGNAFNEEDLKNFEKKIINFLSLKDVNTIEYSAEPKIDGI 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
             ++ Y  GK      RGDG+ GED++  ++ I  IP  ++  N P+ I++RGEV+I  N
Sbjct: 124 SASLIYIDGKLTKGLSRGDGNEGEDITQNLKTIKDIPLEITKSNFPKEIDIRGEVFIENN 183

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQY 255
           DF  + D+        +ANPRNAASG LR+ N     +  L F  +  G   ++  K Q 
Sbjct: 184 DFKKIKDK--------FANPRNAASGSLRQKNSLITAKIPLKFIAYTYGYEKKMNIKNQT 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L+ ++  GF  N   ++      ++  + E++  R  L +DIDG+VYKV++F LQK+L
Sbjct: 236 SFLENLKLWGFKTNPFNKKIIGVKNLMLNHKELEEKRKELAFDIDGIVYKVNDFDLQKRL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A +PRW I+HKF+   + + +++I+IQIGRTG LTPVA+++PVNIGG +++NATLHN
Sbjct: 296 GFAANAPRWAIAHKFSANSSISEIMNIEIQIGRTGALTPVAKIKPVNIGGVIVSNATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED I             +DIRVGD V V+RAG+VIP VV + + +R  +++ F FP  CP
Sbjct: 356 EDEIVR-----------KDIRVGDTVTVERAGDVIPHVVSVDLKKRKQNSKKFIFPLKCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
            C S+ ++D N  T +  A  RC + G  C    +ER+KHFVS+DAFNI+G GK+ ++ F
Sbjct: 405 SCGSKTIKDYNETTKRQDAVRRCASEGFECEKIAIERIKHFVSKDAFNIDGFGKKIVENF 464

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           +  +     +R+P DIF L      +  KIE + G+G +SV NL  SI +++NISLERFI
Sbjct: 465 WNLK----LVRLPQDIFKL------NYNKIEELEGWGKLSVANLRFSIEEKKNISLERFI 514

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +SLGIRH+G E A+ +A++  +  NF +           +  SL  +  +G    Q+I +
Sbjct: 515 YSLGIRHIGQENAKLIARHLKTASNFFRLSGE------KNIESLSNIDGIGITQIQSIKK 568

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+ N  N+  +  L K +         N +  ++NK  + TG L  I R +A+  + Q  
Sbjct: 569 FFLNKTNLKVLSELEKNLLIKDVILINN-NGLLKNKTFMLTGKLNGISRAEAKSLIEQNS 627

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             + + +++K D +I GD P   K+  A++  +KI+N+ ++L +L +  
Sbjct: 628 GKIISNVNKKLDYLIAGDKPTLKKINTAKEWNIKIINQTEWLKMLNKSG 676


>gi|313888253|ref|ZP_07821924.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845656|gb|EFR33046.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 665

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 210/717 (29%), Positives = 344/717 (47%), Gaps = 59/717 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   KE+ +L +EI   +  YY    P++ D+EYD L  +   +       + +  P  
Sbjct: 1   MKDKIKEMENLIKEIDKLNYHYYTLDDPLLSDAEYDKLYDKLVNLEKE----SGTVLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++GG +     K TH     S++K    E L  +  RI +F    + N         
Sbjct: 57  PTTRVGGAVLSKFEKHTHLARLYSMDKAQGDEALLGWFNRIEKFVSDYNQNNVNKLPEPE 116

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           F +E K DG  I + YE    V A+ RG+G  GE++   ++ I ++P  L ++ P  IEV
Sbjct: 117 FIVELKFDGLTINLTYENQNLVMASTRGNGIIGEEILEQVKTIYSVP--LRISYPGKIEV 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           +GE  +  ++    N E      +   N RNAA+G LR L+P     R L  F + +G  
Sbjct: 175 QGEGLMPLSELEKYNQE----NDEKLKNARNAAAGALRNLDPKVTKKRNLTAFFYNVGYI 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E   K   ++   +R   F V+    +   F  I     E+   R+ L   IDG+  KV
Sbjct: 231 EEDMFKSDDDIKNFLRENNFKVSKYNFKVKKFSDITQKIKEIGENRNKLDVLIDGVTIKV 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++   +K LG   + PRW +++KF  ++ ST LLD+   +GRT  +TP A LEPV+IGG 
Sbjct: 291 NDIETRKALGYTNKFPRWAVAYKFEAEEISTTLLDVVWNVGRTAKVTPSAILEPVDIGGV 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D I             + +++G RVL++R+ +VIP+++  + +    + +
Sbjct: 351 TVQRATLNNYDDI-----------LRKKVKIGSRVLIRRSNDVIPEILGTLPS--DNETR 397

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP C S + +D             C   L+C  Q + RL HF SRDA +IEG 
Sbjct: 398 EIEKPKTCPYCGSHLYQD--------GVHIFCPNTLSCVPQLVSRLTHFASRDAMDIEGF 449

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++ ++    +      ++   DI+ L+         I  I GF +    NL ++I   +
Sbjct: 450 SEKTIEKLMAT----IGLKEIPDIYKLK------YEDIIKIEGFKEKRTNNLLNAIENSK 499

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L  FI++LGI +VG + AR LA Y+ S+          +          + +  +G+
Sbjct: 500 KPHLSNFIYALGIPNVGIKTARDLADYFKSFDKLKNSQEEEL----------VSIGDIGN 549

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ IVEF+ + R I AV+ L       +   +      ++    V TGTL+ I R + 
Sbjct: 550 ITAKEIVEFFHDDRIIGAVDELFDLGLKPVYEDDNKGPKPLDKNTFVLTGTLE-IPRKEL 608

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +E +  LGA V+  +S+ TD ++VG+NPGSK EKA+ L +KI++ ++   L+   N 
Sbjct: 609 EEKLISLGAKVTGSVSKNTDYVVVGENPGSKYEKARSLDIKILSLKELEDLVGGLNE 665


>gi|315638276|ref|ZP_07893457.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21]
 gi|315481623|gb|EFU72246.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21]
          Length = 644

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 225/694 (32%), Positives = 359/694 (51%), Gaps = 60/694 (8%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
            +  +     YY+  +P+  D EYD L R   A     P L     P+ P  KI   +  
Sbjct: 8   VELANLWMRAYYEEDEPLASDEEYDRLIREIKAFEKENPSLI---SPDSPTQKIAPTIQS 64

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
              K  H     S+E +++ E+LR +  R              F +EPK DG  + + Y+
Sbjct: 65  KFKKSRHLSKMWSMEDVFDEEELRAWAKRAR--------CEDGFFIEPKFDGASLNLLYQ 116

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
           KG+ V AA RGDG  GEDV+  ++ I  IP+++  N    IE+RGEV I K DF  LN++
Sbjct: 117 KGRLVSAATRGDGEIGEDVTLNVKEIANIPQII--NYEGEIEIRGEVVILKEDFERLNEK 174

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                   +ANPRNAASG LR+L+      R L F+  G+GK +  FAK   E++  +R 
Sbjct: 175 RAKENLSLFANPRNAASGSLRQLDTQITKERNLKFYPWGVGKHTLSFAK-HSELMCFVRE 233

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           LGF  +  VR       ++++Y E+ S+R   P  +DG+V +VD+ +L K+LG   + P+
Sbjct: 234 LGFLKDEFVRVCKNLDEVLTHYKELLSLRDLKPMMMDGMVVRVDDIALCKELGYTIKYPK 293

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           +M + KF   + STRL+ + +Q+GR+G++TPVA LEPVN+ G ++ +A+LHN D I+ L+
Sbjct: 294 FMAAFKFPALEKSTRLVGVSLQVGRSGVITPVAVLEPVNLDGVVVKSASLHNFDEIERLN 353

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                      +R+ D V V R+G+VIPK+  +  + R  +A     P  CP+C+S ++ 
Sbjct: 354 -----------LRLNDFVSVIRSGDVIPKITKVFKDRRGENALKIERPKLCPVCESELL- 401

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
                     A  +C   L C A+ +  + +FVS+   NI+GLG+  ++  ++ +     
Sbjct: 402 -------DEGALIKCQN-LDCKARLVNSIIYFVSKKCLNIDGLGESIVELLYEKQK---- 449

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           I     IF L+          E + GF +  +T L ++I   +   L RFI +LGI H+G
Sbjct: 450 ITSIESIFRLK------FQDFEGLEGFKEKKITKLLNAIESAKICPLYRFITALGIEHIG 503

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A+ LA  +   + + +            +     +   G+ +A ++VEF +   N  
Sbjct: 504 EVAAKKLALSF-DKEWYQK-----------SFEEYKNLEGFGEQMALSLVEFTRV--NQA 549

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            +EA  K ++    + E +  S    K  V TGTL +  R + +  + +LG  VS+ +S+
Sbjct: 550 RIEAFYKLLNLENEKQEISTQSPFYEKTFVITGTLSRP-RDEFKALIERLGGKVSSSVSK 608

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           KTD ++ G+  GSKLEKA++LGVK ++E QF  L
Sbjct: 609 KTDFVLFGEEAGSKLEKARELGVKCIDEIQFNAL 642


>gi|91762853|ref|ZP_01264818.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718655|gb|EAS85305.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 676

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 257/709 (36%), Positives = 402/709 (56%), Gaps = 45/709 (6%)

Query: 20  ELSSLEQ--EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           E+  L++      H+  YY  +KPI+ D E+D LK+    +   +      +    P   
Sbjct: 7   EIEYLKKIDLFQTHNKHYYDKNKPIVSDQEFDLLKKDIIDLESKY---KFLKSEYSPTKS 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IG + + +  K+ H +P LSL   +N EDL+ F  +I  F   KD N+I ++ EPKIDG 
Sbjct: 64  IGFKPSKNFQKIKHKVPMLSLGNAFNEEDLKNFEKKIINFLSLKDVNTIEYSAEPKIDGI 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
             ++ Y  GK      RGDG+ GED++  ++ I  IP  ++  N P+ I++RGEV+I  N
Sbjct: 124 SASLIYINGKLTKGLSRGDGNEGEDITQNLKTIKDIPLEITKSNFPKEIDIRGEVFIENN 183

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQY 255
           DF  + D+        +ANPRNAASG LR+ N     +  L F  +  G   ++  K Q 
Sbjct: 184 DFKKIKDK--------FANPRNAASGSLRQKNSLITEKIPLKFIAYTYGYEKKMNIKNQT 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L+ ++  GF  N   ++      ++  + E++  R  L +DIDG+VYKV++F LQK+L
Sbjct: 236 SFLENLKLWGFKTNPFNKKIIGVKNLMLNHKELEEKRKELAFDIDGIVYKVNDFDLQKRL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A +PRW I+HKF+   + + +++I+IQIGRTG LTPVA+++PVNIGG +++NATLHN
Sbjct: 296 GFAANAPRWAIAHKFSANSSISEIMNIEIQIGRTGALTPVAKIKPVNIGGVIVSNATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED I             +DIRVGD V V+RAG+VIP VV + + +R  +++ F FP  CP
Sbjct: 356 EDEIVR-----------KDIRVGDTVTVERAGDVIPHVVSVDLKKRKQNSKKFIFPLKCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
            C S+ ++D N  T +  A  RC + G  C    +ER+KHFVS+DAFNI+G GK+ ++ F
Sbjct: 405 SCGSKTIKDYNETTKRQDAVRRCASEGFECEKIAIERIKHFVSKDAFNIDGFGKKIVENF 464

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           +  +     +R+P DIF L      +  KIE + G+G +SV NL  SI K++NISLERFI
Sbjct: 465 WNLK----LVRLPQDIFKL------NYNKIEELEGWGKLSVANLRFSIEKKKNISLERFI 514

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +SLGIRH+G E A+ +A++  +  NF +          ++  SL  +  +G    Q+I +
Sbjct: 515 YSLGIRHIGQENAKLIARHLKTASNFFRLSGE------NNIESLSNIDGIGITQIQSIKK 568

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+ N  N+  +  L K +         N +  ++NK  + TG L  I R +A+  + Q  
Sbjct: 569 FFLNKTNLKVLSELEKNLLIKDVILINN-NGLLKNKTFMLTGKLNGISRAEAKSLIEQNS 627

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             + + +++K D +I GD P   K+  A++  +KI+N+ ++L +L +  
Sbjct: 628 GKIISNVNKKLDYLIAGDKPTLKKINTAKEWNIKIINQTEWLKMLNKSG 676


>gi|15604865|ref|NP_219649.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D/UW-3/CX]
 gi|7673995|sp|O84148|DNLJ_CHLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3328547|gb|AAC67737.1| DNA Ligase [Chlamydia trachomatis D/UW-3/CX]
 gi|289525187|emb|CBJ14662.1| NAD-dependent DNA ligase [Chlamydia trachomatis Sweden2]
 gi|297748276|gb|ADI50822.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-EC]
 gi|297749156|gb|ADI51834.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-LC]
          Length = 663

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 230/708 (32%), Positives = 368/708 (51%), Gaps = 51/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S  P   L  
Sbjct: 6   RDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYL-- 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G   +     V HS P LS+  ++++++L +F +R  +           ++LE KIDG 
Sbjct: 64  -GDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLGYSPG----YSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   ++   +  +E
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSHFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +LG
Sbjct: 237 NLQLCSQWGFFVAGMPKQCRSRQDVVERIREIEEMRAALPMAIDGVVIKVDNIAYQDRLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+
Sbjct: 297 LTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS CP+
Sbjct: 357 DEIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   F+
Sbjct: 406 CHEPVVKEK--------VSVRCVNPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKLFE 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   +DIF L           + + GF D S+ NL  SI   + ++L+R + +
Sbjct: 457 ----VGLISSCSDIFALAEEDL------KQVPGFKDRSIQNLLASIAGAKKVALDRLLTA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L I  VG+  A +LA ++ +     +               L+ +  +G  +A +IV F+
Sbjct: 507 LSIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  LG  
Sbjct: 557 SKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRCLGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           VS+ +S+ T  +I G   G KL+KAQ LG+ I NE + L +L   + +
Sbjct: 616 VSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILDAKSVS 663


>gi|160947381|ref|ZP_02094548.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270]
 gi|158446515|gb|EDP23510.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270]
          Length = 662

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 207/706 (29%), Positives = 362/706 (51%), Gaps = 57/706 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  + ++++     YY   +P + D+EYD L      +            PN P  ++G
Sbjct: 3   KMKEIVEKLNLWAYQYYTLDEPSVSDAEYDKLYDELLKLEKE----TGVILPNSPTQRVG 58

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTLEPKI 134
           GE+     K TH     SL+K  + E+L++F  R  +   + +       ++ + +E K 
Sbjct: 59  GEVLEKFEKHTHLKELYSLQKAQSFEELKEFHNRCTKLLNEYNSINNSKKTLEYYVEFKF 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y+KG  V A+ RG+G  GE+V   ++ I +IP  L ++   ++E++GE  + 
Sbjct: 119 DGLTINLTYDKGILVSASTRGNGVYGEEVFEQVKTIKSIP--LEIDYKGLVEIQGEAIMP 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
            +     N+        P  N RNAA+G +R L+P    +R L+ F++ +G  S+   K 
Sbjct: 177 LSALTKFNE----TAEVPLKNARNAAAGAIRNLDPKKTASRNLDAFIYNVGFKSDEQFKT 232

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q EM+  ++   F VN   ++      I     E+  +R  + Y  DG+V KV++F L++
Sbjct: 233 QKEMISFLKENKFKVNEYEKKCLNLKEIKDKIREIDVLRKKVDYLTDGVVIKVNDFELRE 292

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
             G   + PR+ I++KF  ++ ST L ++   +GRTG +TP A LEPV IG   +  ATL
Sbjct: 293 FFGYTNKFPRFAIAYKFEAEEYSTILKEVVWNVGRTGKVTPTAILEPVEIGDVTVQRATL 352

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           +N D I             + +++  RVL++R+ +VIP+++  + +E + +      P+ 
Sbjct: 353 NNYDDI-----------LRKKVKINSRVLIRRSNDVIPEILGTM-DEDNGNEIEIKMPTH 400

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S ++RD             CT  LAC+ Q    L HF S++A NIEGL ++ ++ 
Sbjct: 401 CPYCNSELIRD--------GVHFFCTNTLACTPQLTSSLVHFSSKNAMNIEGLSEKTIES 452

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F        +     I+ L+  +  +  K      F D  V NL +SI + + ++LE F
Sbjct: 453 LFDK----LGVDKVYKIYDLKYDELITLEK------FKDKKVNNLLNSIEESKKVNLENF 502

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGI++VG + A+ LAK Y++  N  +               L+++  VGD++A +I 
Sbjct: 503 IYALGIKNVGIKTAKDLAKKYINLDNLRETT----------VEELLQINDVGDVVANSIF 552

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           EF+ +  +  A+  LL++    I   E    SE  +KK+V TGT +  +R   ++  +Q 
Sbjct: 553 EFFNDEYSKDALNKLLEKGIEVIPYKE-ISKSEFTDKKIVITGTFKNYKRKDLEDIFSQN 611

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G +V + +++ TD ++VG+  GSKL+KAQ+LG+ I++E+     L+
Sbjct: 612 GLIVQSAVAKSTDFLVVGEKAGSKLKKAQELGINIISEKNLEEFLK 657


>gi|296329302|ref|ZP_06871803.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153658|gb|EFG94475.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 696

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 224/711 (31%), Positives = 366/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L ++++ + D YY  +K +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H    LSL   +NI ++ +FI RI +   K  +  + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHLHQMLSLANSYNIGEIVEFIERIKKKIPK--EQELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGFIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWDEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKIIEEPVCCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      + +   +C     C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLERE------EGLVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   ++ I++
Sbjct: 484 ----LGYIKTVVDIFDLKNHREA----LENIDKMGKRSIENLLNSIEESKNRDYDKVIYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK             NI       +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIPFIGKVASKILAK----------ASKNIDKLMTMTFEELTSIEGIGEIAANEIIAFF 585

Query: 617 QNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
              +N   +    E  LK          +NV+     K  +FTGTL+   R + +E + +
Sbjct: 586 TKEKNQKIIQGLKEKGLKFEIKESEASVQNVNPNFVGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+K Q++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKVQEIPTIKILTEEEFIELKDKFD 696


>gi|307637302|gb|ADN79752.1| NAD-dependent DNA ligase [Helicobacter pylori 908]
 gi|325995893|gb|ADZ51298.1| DNA ligase [Helicobacter pylori 2018]
 gi|325997488|gb|ADZ49696.1| NAD-dependent DNA ligase [Helicobacter pylori 2017]
          Length = 656

 Score =  632 bits (1629), Expect = e-178,   Method: Composition-based stats.
 Identities = 224/711 (31%), Positives = 354/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   + I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEENPNHIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATATNEFSKNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE V+   + I  IP  ++ N    IE+RGEV I+K
Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVTNNAKHIANIPHSIAYN--GEIEIRGEVIIAK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 EDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E  +QK+
Sbjct: 232 KECLDFIVSLGFSTIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELDIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++  ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R    Q    P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMHPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L           ++  +  ++L +      G  +A ++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLH----------VLEKSEAEFLEM---EGFGVEMAHSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P        ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKSSDTTEEKQKSSSVFSDKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +++ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++ +
Sbjct: 606 NLGAKIASSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKELD 656


>gi|210134818|ref|YP_002301257.1| NAD-dependent DNA ligase LigA [Helicobacter pylori P12]
 gi|254781345|sp|B6JLJ9|DNLJ_HELP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|210132786|gb|ACJ07777.1| DNA ligase [Helicobacter pylori P12]
          Length = 656

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 224/711 (31%), Positives = 355/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   + I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEKNPNDIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N  +L+ ++ RI + +      +  F   PK+D
Sbjct: 60  QKVGATTTTPFSKNPHLMRMWSLDDVFNQSELQAWLQRILKVYP-----NASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  GK V A  RG+G  GE V+   + I  IP  ++ +    IE+RGEV ISK
Sbjct: 115 GVSLNLLYHHGKLVSATTRGNGLEGELVTNNAKHIANIPHFIAYD--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 EDFEALNKERLEANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E  +QK+
Sbjct: 232 KECLDFIVSLGFGAIQYLSLNKNHQEIEESYHTLIKEREGFFALLDGMVIVVNELGIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++  ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAMVNRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  +   R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIVNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L          N++  +  ++L +      G  +A ++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMAHSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   NK +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+NPGSKL  A++ GV ++NEE+ L  L++ +
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENPGSKLALAKKHGVSVLNEEELLKRLKELD 656


>gi|15611625|ref|NP_223276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori J99]
 gi|7674020|sp|Q9ZLM1|DNLJ_HELPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4155109|gb|AAD06141.1| DNA LIGASE [Helicobacter pylori J99]
          Length = 656

 Score =  630 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 226/711 (31%), Positives = 357/711 (50%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   +PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEENPNRIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N  +LR ++ RI + +      +  F   PK+D
Sbjct: 60  QKVGATATNEFSKNPHLMRMWSLDDVFNQNELRAWLQRILKVYP-----NASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK + A  RG+G  GE V+   + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLISATTRGNGLEGELVTNNAKHIANIPHSIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F +  
Sbjct: 173 EDFDALNKERLNANEPLFANPRNAASGSLRQLDSNITKKRKLQFIPWGVGKHSLHFLRF- 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  VDE  +QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVDELDIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++  ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R    Q    P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMRPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A ++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMAHSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L + ++P        ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFELLNPKSSDTAEEKQKSSSVFSDKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +++ +S KTD +I G+N GSKL  AQ+ GV ++NEE+ L  L++ +
Sbjct: 606 NLGAKIASSVSAKTDFLIAGENAGSKLALAQKHGVSVLNEEELLKRLKELD 656


>gi|291519153|emb|CBK74374.1| DNA ligase, NAD-dependent [Butyrivibrio fibrisolvens 16/4]
          Length = 651

 Score =  630 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 199/692 (28%), Positives = 335/692 (48%), Gaps = 52/692 (7%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN-LSLFKVTHSI 93
           YY   +P I D EYD L  +  A     P+      P+ P  KIGG     +  KVTH +
Sbjct: 4   YYNDDEPEITDFEYDQLMLQLKAAEKEHPEWV---TPDSPTQKIGGVAKREAGVKVTHDV 60

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG-----KF 148
           P LS+E ++  E++ +++ ++             F++E KIDG  +T+RYEK      K 
Sbjct: 61  PMLSIEDVFTKEEVVEWVKKVKAV-----HPDARFSVEAKIDGLSMTLRYEKDTTGKLKL 115

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
             A  RGDG  GEDV+     IP + R L L   + +++RGEVY+S  DF   N++    
Sbjct: 116 KLAETRGDGIVGEDVTENALVIPDVNRYLDLPY-DNLQLRGEVYMSHEDFDRYNEDQELK 174

Query: 209 GRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
           G K  ANPRN A+G LR+L+      R L  FV  + +  +       + L  +     P
Sbjct: 175 GGKLAANPRNLAAGTLRQLDANITKQRGLKMFVFNVQQGPDELTVSHCKGLDILSEHKVP 234

Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
           V    R  +    I++  +E+   R    +DIDG V K+D+ + +      A+     I+
Sbjct: 235 VV-YHRICDNADEILNVIDEIGEKREEFEFDIDGAVVKIDQVAYRADFSTSAKYTNGHIA 293

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           +K+  ++  T+LLD+++ +GRTG + P A  EP+ + G  ++ ATLHN+D+I  L+    
Sbjct: 294 YKYPPEEKETKLLDVELSVGRTGRVNPTAIFEPIRLCGTTVSRATLHNQDFIDELN---- 349

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                  I +GD ++V ++GE+IPK+ ++  ++R      +  P+ CP C   V RD + 
Sbjct: 350 -------IGIGDTIVVYKSGEIIPKIKEVKQDKRPAGTTTYKIPNICPACGGPVSRDAD- 401

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  +CT   +C AQ    + +FVSRDA +I G G+  +    +       I+  
Sbjct: 402 -----TADMKCTNP-SCPAQLERHIINFVSRDAMDIRGFGEVYIIDLVRR----GYIKDI 451

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
           ADI++L+ ++       E I+G  + +   L   I   +     +     GI +VG   A
Sbjct: 452 ADIYSLKDKRDELIE--EGIIG-KEKNTDKLLGVIESSKENDAVKLFTGFGIPNVGKAAA 508

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           ++L   +   +   +     +          ++V  +G+I A++I ++  +P NI  +  
Sbjct: 509 KALLGQFKDIEKIMELSEEEL----------MQVNDIGEISAKSIYDYLHDPVNIDIIGR 558

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L       +   ++  + ++     V TGTL  + R +AQE +   G   +  +S+KT  
Sbjct: 559 LKAAGVNMVEEEKEGATDKLSGLTFVITGTLPTMGRKEAQELIELNGGKCAGSVSKKTSY 618

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ G+  GSKL+KA  LGV +++EE  L L+ 
Sbjct: 619 LVAGEAAGSKLDKANSLGVTVLDEEGLLSLIN 650


>gi|298736308|ref|YP_003728834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8]
 gi|298355498|emb|CBI66370.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8]
          Length = 656

 Score =  630 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 229/714 (32%), Positives = 362/714 (50%), Gaps = 65/714 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++  + ++ L   +S+H   YY    PI+ D+ YD L +   A     P+  ++   N
Sbjct: 4   SQKEYLERIAYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---N 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+G     S  K +H +   SL+ ++N  +L+ ++ RI + +      S  F   P
Sbjct: 57  SPTQKVGAITTNSFNKNSHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSP 111

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y+ GK V A  RG+G  GE V+   + I  IP  ++ +    IE+RGEV 
Sbjct: 112 KLDGVSLNLLYQHGKLVKATTRGNGLEGELVTNNAKHIANIPHFIAYD--GEIEIRGEVI 169

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ISK DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F 
Sbjct: 170 ISKKDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E L  +  LGF     +        I   Y+ +   R      +DG+V  VDE  +
Sbjct: 230 -SFKECLDFIVSLGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVDELDI 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK+LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA+I  A
Sbjct: 289 QKELGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMINRA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   I+            ++I + DRV+V R+G+VIPK++  + + R         P
Sbjct: 349 TLHNYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + +
Sbjct: 398 KVCPICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVI 448

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+ +     I    D++ L+        K      F      NL D+I K +N  L 
Sbjct: 449 EQLFEEK----LIVNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLW 498

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I +LGI H+G   +++LA+Y L          N++  +  ++L +      G  +A++
Sbjct: 499 RLINALGIEHIGKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARS 545

Query: 612 IVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +V FY +  N   + +L + ++P    +   ++  SS   NK +V TGTL K ++  AQ 
Sbjct: 546 LVNFYAS--NQEFIRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ- 602

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +  LGA +S+ +S KTD +I G+NPGSKL  A++ GV ++NEE+ L  L++ +
Sbjct: 603 MLENLGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKELD 656


>gi|88855225|ref|ZP_01129890.1| DNA ligase [marine actinobacterium PHSC20C1]
 gi|88815753|gb|EAR25610.1| DNA ligase [marine actinobacterium PHSC20C1]
          Length = 775

 Score =  630 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 214/782 (27%), Positives = 353/782 (45%), Gaps = 102/782 (13%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++  AR E+ +L   I    D YY+  + ++ D+EYD L +R + +    P+L   +  +
Sbjct: 25  ALAAARDEVGTLSTRILELRDAYYERDEVLVDDAEYDELIQRLERLEREHPEL---QSQD 81

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG+       V H+   LSL+ +++IE+   +  ++ R   +    ++ F  E 
Sbjct: 82  SPTLRVGGKAAALFDPVEHAERMLSLDNVFSIEEFADWAAKVQRDSAR----AVDFLCEL 137

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           KIDG  I +RY  G  V AA RGDG  GEDV+  +  +  IP+ L     P ++EVRGEV
Sbjct: 138 KIDGLAINLRYIDGVLVSAATRGDGRVGEDVTENVVRVDGIPQRLAGTGHPPMVEVRGEV 197

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-------TDITRYL---NFFVH 241
           +I    F  LN E   +G K +ANPRNAA+G LR+ +        + + R L      VH
Sbjct: 198 FIPLELFRELNAEQTRIGEKVFANPRNAAAGSLRQKSEGKSDEKLSHMRRRLASLRMLVH 257

Query: 242 GLGKTSEI-----FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           G+G            + Q ++   +   G P +   R  ++      +       R ++ 
Sbjct: 258 GIGAWDGARDGQDPIRSQSDVYGVLATWGLPTSTHFRVVDSADKAADFIRYFGEHRDSVE 317

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           ++IDG+V KVDE +L  +LG  +R+PRW I++K+  +Q +T+LLDI + IGRTG  TP A
Sbjct: 318 HEIDGIVIKVDELALHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVGIGRTGRATPYA 377

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            +EP  + G+++  ATLHN+D +K            + + +GD V++++AG+VIP+++  
Sbjct: 378 VMEPALVAGSVVRQATLHNQDVVKR-----------KGVLIGDTVVLRKAGDVIPEILGP 426

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +   R      F  P+ CP C + +         +     RC    +C AQ   R++H  
Sbjct: 427 VEELRDGSEYAFVMPTLCPECGTPL-----RPMKEGDIDLRCPNARSCPAQVRGRIEHAG 481

Query: 477 SRDAFNIEGLGKQQLDFFFKS-EDPAFSIRIPADIFTLQRR------------------- 516
           SR   +IE LG+       +  E     +   A +F L                      
Sbjct: 482 SRGGLDIEVLGEVVARALAQPLEPEVPPLINEAGLFDLTVEDIFPIVIAVRDSETGEVIT 541

Query: 517 QQTSTTKIENILGFGDVS---------------------------VTNLYDSINKRRNIS 549
               T +  +       S                              L  ++ + +   
Sbjct: 542 DDDGTDRTISPFRRVRKSSGAGADPAFDPNAELFSGSADAVPSSNAIKLIANLQEAKTKP 601

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + SL IRHVG   AR+LA Y+ S +         +A           V  VG IIA
Sbjct: 602 LWRLLVSLSIRHVGPVAARALADYFGSLEAIRTAKREELAA----------VDGVGQIIA 651

Query: 610 QAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            +++E+++   +   V+                    ++    +    +V TG+L    R
Sbjct: 652 DSVIEWFEVDWHQEIVQRWAEAGVQWSTPGHPGPGAAQSKDGLLAGLTIVATGSLDGFTR 711

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             AQE +   GA  ++ +S+KTD +  G   GSKL KA++LG+ I++  QF  LL++  +
Sbjct: 712 EGAQEAIIAAGAKAASSVSKKTDYVAAGPGAGSKLTKAEELGITILDAAQFARLLEEGPS 771

Query: 724 TL 725
            L
Sbjct: 772 AL 773


>gi|57241999|ref|ZP_00369939.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195]
 gi|57017191|gb|EAL53972.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195]
          Length = 644

 Score =  630 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 224/690 (32%), Positives = 357/690 (51%), Gaps = 60/690 (8%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           +     YY+  +P+  D EYD L R         P L     P+ P  KI   +     K
Sbjct: 12  NLWMRAYYEEDEPLASDEEYDRLIREIKVFEKENPSLI---SPDSPTQKIAPTIQSKFKK 68

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
             H     S+E +++ E+LR +  R              F +EPK DG  + + Y+KG+ 
Sbjct: 69  SRHLSKMWSMEDVFDEEELRAWAKRAR--------CEDGFFIEPKFDGASLNLLYQKGRL 120

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
           V AA RGDG  GEDV+  ++ I  IP+++  N    IE+RGEV I K DF  LN++    
Sbjct: 121 VSAATRGDGEIGEDVTLNVKEIANIPQII--NYEGEIEIRGEVVILKEDFERLNEKRAKE 178

Query: 209 GRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
               +ANPRNAASG LR+L+      R L F+  G+GK +  FAK   E++  +R LGF 
Sbjct: 179 NLSLFANPRNAASGSLRQLDTQITKERNLKFYPWGVGKHTLSFAK-HSELMCFVRELGFL 237

Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
            +  VR       ++++Y E+ S+R   P  +DG+V +VD+ +L K+LG   + P++M +
Sbjct: 238 KDEFVRVCKNLDEVLTHYKELLSLRDLKPMMMDGMVVRVDDIALCKELGYTIKYPKFMAA 297

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
            KF   + STRL+ + +Q+GR+G++TPVA LEPVN+ G ++ +A+LHN D I+ L+    
Sbjct: 298 FKFPALEKSTRLVGVSLQVGRSGVITPVAVLEPVNLDGVVVKSASLHNFDEIERLN---- 353

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                  +R+ D V V R+G+VIPK+  +  + R  +A     P  CP+C+S ++     
Sbjct: 354 -------LRLNDFVSVIRSGDVIPKITKVFKDRRGENALKIERPKLCPVCESELL----- 401

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  +C   L C A+ +  + +FVS+   NI+GLG+  ++  ++ +     I   
Sbjct: 402 ---DEGALIKCQN-LDCKARLVNSIIYFVSKKCLNIDGLGESIVELLYEKQK----ITSI 453

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
             IF L+          E + GF +  +T L ++I   +   L RFI +LGI H+G   A
Sbjct: 454 ESIFRLK------FQDFEGLEGFKEKKITKLLNAIESAKICPLYRFITALGIEHIGEVAA 507

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + LA  +   + + +            +     +   G+ +A ++VEF +   N   +EA
Sbjct: 508 KKLALSF-DKEWYQK-----------SFEEYKNLEGFGEQMALSLVEFTRV--NQARIEA 553

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
             K ++    + E +  S    K  V TGTL +  R + +  + +LG  VS+ +S+KTD 
Sbjct: 554 FYKLLNLENEKQEISTQSPFYEKTFVITGTLSRP-RDEFKALIERLGGKVSSSVSKKTDF 612

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           ++ G+  GSKLEKA++LGVK ++E QF  L
Sbjct: 613 VLFGEEAGSKLEKARELGVKCIDEIQFNTL 642


>gi|254796855|ref|YP_003081692.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois]
 gi|254590064|gb|ACT69426.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois]
          Length = 670

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 255/716 (35%), Positives = 396/716 (55%), Gaps = 51/716 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A+KE+  L +++  H+  YYQ   P I D+EYD++K R   +  A P L          
Sbjct: 2   KAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKGRYLKLLEANPSLGFPVV----- 56

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             IG   +    KV H  P LSL  I++ E+L ++I R  RF   K  N + F  EPKID
Sbjct: 57  --IGYPASEKFQKVKHLSPMLSLRNIFSEEELVEYIERTKRFLNLK--NELEFLCEPKID 112

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G   + RY  GK +  A RGDG  GE++   ++ I   P  + +++P+++EVRGEV++  
Sbjct: 113 GVSFSARYINGKLLSCATRGDGKIGENIIDNMKVINGFPIEI-VDVPDLLEVRGEVFLDH 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
           + F  L         + ++NPRNAA+G LR+LNP     R L +F + + K   I  + Q
Sbjct: 172 DTFQTL---------EGFSNPRNAAAGSLRQLNPEITKERNLQYFAYSISKIDGI--EHQ 220

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            ++L  +   GF  N     ++    I+S+Y+ +   RS + YDIDGLVYKV+   L  +
Sbjct: 221 EDVLHFLSERGFMTNPLRLASSKVPEIMSFYDSVYRGRSQIKYDIDGLVYKVNNLKLHAR 280

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  + +PRW I+HKF   +  T L  I + +GRTGI+TPVA L+P+ IGG +I+ A+L+
Sbjct: 281 LGTLSDAPRWAIAHKFPSHRGKTILEKIKLSVGRTGIITPVAHLKPITIGGVVISRASLY 340

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED +             +DIR GD V V+RAG+VIPKV+++ ++ R    + F FP  C
Sbjct: 341 NEDELAR-----------KDIREGDLVTVERAGDVIPKVLEVDISYRTNQER-FIFPDKC 388

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S ++R  N       AA RC     C+ Q ++++KH VS  AF+I+G+G   + FF
Sbjct: 389 PSCSSTLIRKNNE------AAIRCNNRKKCTEQVIQQIKHLVSAQAFDIDGIGTSHISFF 442

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     I  PADIF L + +     +I+   G+G+ SV N+  SI K R ISLE+FI
Sbjct: 443 IEKE----FISEPADIFCLDKHR----DEIKKYDGWGEKSVDNILTSIEKSRKISLEKFI 494

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           FSLGI++VG + A  LA+ + S+ N+  ++ +I+  +      +  +  +G  + +++++
Sbjct: 495 FSLGIKNVGEKTAYMLAQQFKSFANWFDKM-SILKDDTQTENEIRNLDGMGSCVCESLLD 553

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+ +P N   V++L   V   I  H  ++   +  KK VFTGTL  I R +A+E V + G
Sbjct: 554 FFSDPDNCNMVKSLSNHV--MITDHAISIGGPLSGKKFVFTGTLLSITREEAKEIVKKAG 611

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
            +V   +S++ D ++ G+  GSKL KA +LG+ I+ E+  +      NT     D 
Sbjct: 612 GIVLNSVSKQVDYVVAGEKAGSKLVKANELGIAIIEEKTLIEFTTGNNTPALKRDT 667


>gi|320094066|ref|ZP_08025884.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979007|gb|EFW10532.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 776

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 204/794 (25%), Positives = 344/794 (43%), Gaps = 102/794 (12%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S +  R     L   I      YY    P + D+EYD L R  + I  A P L  +   +
Sbjct: 6   SFDAIRSRYDQLVAAIEEARRAYYDRDAPTLADAEYDRLYRELEDIERAHPQLRGA---D 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +GG  + +   V H     SL+ ++++E+L  +  R++   ++  +  +  T E 
Sbjct: 63  SPTLSVGGSADSAFAPVRHLQQMTSLDDVFSLEELAGWEQRMH---EETGEAELPMTAEV 119

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           K+DG  + + Y  G    AA RGDGH GED++A +R I +IP  L +   P  +E+RGEV
Sbjct: 120 KVDGLAVNLLYVDGALRRAATRGDGHVGEDITANVRTIASIPARLDTAAPPRRVEIRGEV 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-- 248
           Y    +F + N+  +A G + + NPRNAA+G LR+ + ++   R L    HG+G      
Sbjct: 180 YFPVAEFASFNEARVAAGERAFVNPRNAAAGSLRQKDSSETAKRPLAMVAHGVGFVEAGG 239

Query: 249 --IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  Q+   Q +R  G PV+   R       I  +  E    R +L ++IDG+V K+
Sbjct: 240 AFTPPTTQHGWYQLLREWGMPVSPYTRLLTGRGAIEEFIAETGEARHSLAHEIDGVVVKI 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ+ LG  +R+PRW  ++KF  ++  TRLLDI +Q+GRTG +TP   +E V + G+
Sbjct: 300 DDLALQRSLGSTSRAPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMESVLVAGS 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN   +K            + + +GD V++++AG+VIP++V  +   R+   +
Sbjct: 360 NVARATLHNAQEVKR-----------KGVLIGDLVVLRKAGDVIPEIVAPVEEARNGSER 408

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            FS P+ CP C + +V     +  +     RC    AC AQ  ER+ H  +R A +IEGL
Sbjct: 409 EFSMPAACPSCGTALV-----EEKEGDVDLRCPNKAACPAQITERIAHIGARSALDIEGL 463

Query: 487 GKQQLDFFFKSEDPAFSI---RIPADIFTLQRRQQTSTTKIENILGFGD----------- 532
           G +      + E+    +    +      L+   +      E++                
Sbjct: 464 GDEAALALTQPENNRDQVAAALVAGHAVVLEDGTRLELADAEDLPHAEQLATADAMLPEP 523

Query: 533 -------VSVTNLYDSINKRRNISLERFIFSLGIR------------------------- 560
                   S      +    R++ + R     G                           
Sbjct: 524 QAPVLTAESALFDLRA-EDVRDVMVWRPTTVKGEPTGDWAQVRYFWTKAHRAKKVKGETV 582

Query: 561 --HVGAEIARSLAKYYLSYQN-------------------------FAQEINNIIAHNND 593
              VG   ++ L +     +                           A    ++ A    
Sbjct: 583 YERVGTTASKMLTQMLDEMERAKSQPLARVLVALSIRHVGPTAARALAARFGSMDALRAA 642

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
           D   L  V  VG +IAQ++ ++++   +   +    +          + V + +E   +V
Sbjct: 643 DVEELAAVDGVGGVIAQSLADWFEVDWHREILRRWSEAGVRMEDEAPEEVPAVLEGLTIV 702

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            +G +    R  A+E +T  G   S  +S+KT +++ G   GSK  KA+ LGV +++E Q
Sbjct: 703 VSGAMPGYDREGAKEAITARGGKASGSVSKKTSLVVAGPGAGSKAAKAESLGVPVISEAQ 762

Query: 714 FLFLLQQYNTTLRI 727
           F  LL+     + +
Sbjct: 763 FADLLEGGLAAVGL 776


>gi|308061946|gb|ADO03834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Cuz20]
          Length = 656

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 228/711 (32%), Positives = 361/711 (50%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY     I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDSIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTPNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFP-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++T ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAMVTKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L          N++  +  ++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFNHKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656


>gi|310778043|ref|YP_003966376.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926]
 gi|309747366|gb|ADO82028.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926]
          Length = 677

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 218/718 (30%), Positives = 366/718 (50%), Gaps = 52/718 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++ + ++++I  ++  YY  ++ ++ D EYD L +  + I    P++   +D   
Sbjct: 1   MENILEKATKIKEKIDKYNYYYYVKNESLVSDIEYDKLLKELEEIEKKHPEI---KDELS 57

Query: 74  PLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS----IFF 128
           P  ++G  ++     KV H  P LSL   +NI+D+  F  RI +   K  ++       +
Sbjct: 58  PTRQVGSSLSDTKFQKVEHKKPMLSLSNTYNIKDVEDFHQRIDKILGKLKEDESKKITDY 117

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            LE K+DG  I++ Y+ GK V    RGDG  GEDV+  I  I +IP+ L  NI   IE R
Sbjct: 118 ALELKLDGVSISVHYKNGKLVKGVTRGDGTVGEDVTENIMEIKSIPKYLKENI--DIEAR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE+ +  ++F  LN      G   +ANPRNAASG LR+L+   +  R L+ + + L    
Sbjct: 176 GEIVLPLSEFKKLNQIRYDKGEDLFANPRNAASGTLRQLDSKIVAERNLDCYFYFLADCD 235

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           ++  +   E ++ +  +G          ++   +       ++ R  L Y+ DGLV KV+
Sbjct: 236 KLGIEKHSESMEFLEKVGLKTTGVCDLCSSIEELEDRIRYWENNRGVLDYETDGLVIKVN 295

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              L  +LG   +SPRW IS+KF  KQ +T L +I  Q+GRTG +TPVA LE V + G+ 
Sbjct: 296 MVELWDKLGATTKSPRWAISYKFPAKQVTTTLKNITWQVGRTGKVTPVAELEEVEVSGSK 355

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN D I             +D+++GDRV +++A E+IP+VV ++   R  + + 
Sbjct: 356 VKRASLHNFDEI-----------IRKDVKIGDRVFIEKAAEIIPQVVKVVKEARTGEEKE 404

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              PS CP C + + R+      + +   RC     C A+   ++++FVSRDA NI GLG
Sbjct: 405 IMPPSVCPECGTELGRE------EGLIDLRCPNE-KCPAKVRGQIEYFVSRDAMNINGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K+ ++ F +       I+  +DI+ L   +     +++++   G  SV NL  SI   + 
Sbjct: 458 KKIVEKFIEIGK----IKDVSDIYDLHLYK----DELKSLEKMGAKSVENLLKSIEDSKK 509

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               + ++SLGI HVG  +A  LAK   +    AQ               L+ +  VG  
Sbjct: 510 REYPKSLYSLGIPHVGKFLASLLAKESKNIDKLAQM----------SIEDLLEIDGVGKK 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +A+++   ++N + +  +E L           +    +  + E ++K  + TG L+   R
Sbjct: 560 VAESVYGVFRNKKFLERLEKLKNYGVNFKIKEVEDTAEFFNEEFKDKTFLATGKLKHFTR 619

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
              +EY+  LG    + +S+K D +IVG+  GSKL+KA++L  VKI+ E +FL + ++
Sbjct: 620 EGIKEYIESLGGKNLSGVSKKLDYLIVGEKAGSKLKKAEELKTVKILTESEFLEMTEK 677


>gi|307747505|gb|ADN90775.1| DNA ligase [Campylobacter jejuni subsp. jejuni M1]
          Length = 647

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 212/704 (30%), Positives = 355/704 (50%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R   A      D       + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  + R +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESEFRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ ++    E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIA--YKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  GLG+ +  F K   E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGLGENTLNFTK-HSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+ ++R   P  +DG+V ++D+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCVNLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +  + R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HKK----ITTLESIFHLK------FSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFGK------------EWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RV--NRTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-SRDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L +K ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLIKAKELEIKCIDESAFNELVKE 647


>gi|166154367|ref|YP_001654485.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 434/Bu]
 gi|166155242|ref|YP_001653497.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335620|ref|ZP_07223864.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis L2tet1]
 gi|254781287|sp|B0B9Q4|DNLJ_CHLT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781289|sp|B0BBD3|DNLJ_CHLTB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|165930355|emb|CAP03841.1| NAD-dependent DNA ligase [Chlamydia trachomatis 434/Bu]
 gi|165931230|emb|CAP06795.1| NAD-dependent DNA ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 663

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 229/708 (32%), Positives = 367/708 (51%), Gaps = 51/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S  P   L  
Sbjct: 6   RDDYIALCTELVEHDRRYYALNQPTISDYSYDMKMRELQEIEVQHPEWKVSWSPTMYL-- 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G   +     V HS P LS+  ++++++L +F +R  +           ++LE KIDG 
Sbjct: 64  -GDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLGYSPG----YSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL   ++   +  +E
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSHFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +LG
Sbjct: 237 NLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+
Sbjct: 297 LTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS CP+
Sbjct: 357 DEIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   VV++          + RC   L CS   LE++  F S+ A NI+ LG++ +   F+
Sbjct: 406 CHEPVVKEK--------VSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKLFE 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   +DIF L           + + GF D S+ NL  SI   + ++L+R + +
Sbjct: 457 ----VGLISSCSDIFALTEEDL------KQVPGFKDRSIQNLLASIAGAKKVALDRLLTA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L I  VG+  A +LA ++ +     +               L+ +  +G  +A +IV F+
Sbjct: 507 LSIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  LG  
Sbjct: 557 SKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           VS+ +S+ T  +I G   G KL+KAQ LG+ I NE +   +L   + +
Sbjct: 616 VSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESKLSRILDAKSVS 663


>gi|157414868|ref|YP_001482124.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           81116]
 gi|190359240|sp|A8FL10|DNLJ_CAMJ8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157385832|gb|ABV52147.1| DNA ligase [Campylobacter jejuni subsp. jejuni 81116]
 gi|315931784|gb|EFV10739.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 327]
          Length = 647

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 212/704 (30%), Positives = 353/704 (50%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R   A      D       + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  + R +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESEFRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ ++    E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIA--YKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  GLG+ +  F K   E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGLGENTLNFTK-HSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+ ++R   P  +DG+V ++D+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCVNLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+          E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HKK----ITTLESIFHLK------FNDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFGK------------EWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RV--NRTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-SRDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L +K ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLIKAKELEIKCIDESAFNELVKE 647


>gi|188527537|ref|YP_001910224.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470]
 gi|254781347|sp|B2UTL2|DNLJ_HELPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188143777|gb|ACD48194.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470]
          Length = 656

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 231/711 (32%), Positives = 360/711 (50%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY     I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDSIVSDAVYDELYQELKAYEGKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTPNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFI-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ I  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGIINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L          N++  +  ++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    +   ++  SS   NK +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAEEKQESSSVFSNKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656


>gi|317177554|dbj|BAJ55343.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F16]
          Length = 656

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 232/711 (32%), Positives = 361/711 (50%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K +H +   SL+ ++N  +L+ ++ RI + +         F   PK+D
Sbjct: 60  QKVGAITPNSFNKNSHLMRMWSLDDVFNQNELQAWLQRILKAYPST-----SFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAITYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 KDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHALIREREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPIEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A ++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMAHSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   NK +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA VS+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKVSSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|308184399|ref|YP_003928532.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180]
 gi|308060319|gb|ADO02215.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180]
          Length = 656

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 227/711 (31%), Positives = 357/711 (50%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   + I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEENPNRIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTTNPFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  GK V A  RG+G  GE V+   + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYHHGKLVSATTRGNGLEGELVTHNAKHIANIPHFIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+G+ S  F    
Sbjct: 173 EDFEALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGEHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  +   R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    +   ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAEEKQKSSSVFSDKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +++ +S KTD +IVG+NPGSKL  AQ+ GV ++NEE+ L  L++ +
Sbjct: 606 NLGAKIASSVSAKTDFLIVGENPGSKLALAQKHGVSVLNEEELLKRLKELD 656


>gi|153952455|ref|YP_001398174.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. doylei
           269.97]
 gi|190359241|sp|A7H3U4|DNLJ_CAMJD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152939901|gb|ABS44642.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 647

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 211/704 (29%), Positives = 354/704 (50%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R          D       + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEV---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ ++    + IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIA--YKKRIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F K   E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTK-HSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ ++       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFVRDLGFLKDDFIKLCANLDEVLKAYDELLTLREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ I++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGINLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISHPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HKK----ITTLESIFHLK------FSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + + + +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFGK------------EWHKQSFEAYVNLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E    S I  K  V TGTL +  R + +  +  LG  
Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEVKSDSVIFGKTFVITGTLSRP-RDEFKALIENLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|86149767|ref|ZP_01067996.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597007|ref|ZP_01100243.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562237|ref|YP_002344016.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|122952953|sp|Q0PAT1|DNLJ_CAMJE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|85839585|gb|EAQ56845.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190696|gb|EAQ94669.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359943|emb|CAL34732.1| DNA ligase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925847|gb|ADC28199.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315927323|gb|EFV06667.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930607|gb|EFV09637.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 305]
          Length = 647

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 214/704 (30%), Positives = 355/704 (50%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R          D       + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ ++    E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIA--YKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F K   E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTK-HSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+          E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HKK----ITTLESIFHLK------FNDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +   + + Q            + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFGK-EWYKQ-----------SFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RV--NRTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSRP-RDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|317012429|gb|ADU83037.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Lithuania75]
          Length = 656

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 230/714 (32%), Positives = 363/714 (50%), Gaps = 65/714 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++  + ++ L   +S+H   YY   +PI+ D+ YD L +   A     P+  ++   N
Sbjct: 4   SQKEYLERIAYL-NTLSHH---YYNLDEPIVSDAIYDELYQELKAYEEKNPNDIQA---N 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      +  F   P
Sbjct: 57  SPTQKVGATTTNSFSKNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----NASFVCSP 111

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ +    IE+RGEV 
Sbjct: 112 KLDGVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHFIAYD--GEIEIRGEVI 169

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ISK DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F 
Sbjct: 170 ISKKDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E  +
Sbjct: 230 -SFKECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELDI 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK+LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+I  A
Sbjct: 289 QKELGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAIINRA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   I+            ++I + DRV+V R+G+VIPK++  + + R         P
Sbjct: 349 TLHNYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKVERP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + +
Sbjct: 398 KVCPICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVI 448

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+ +     I    D++ L+        K      F      NL D+I K +N  L 
Sbjct: 449 EQLFEEK----LIVNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLW 498

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I +LGI H+G   +++LA+Y L          N++  +  ++L +      G  +A++
Sbjct: 499 RLINALGIEHIGKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARS 545

Query: 612 IVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +V FY +  N   + +L + ++P    +   ++  SS   NK +V TGTL K ++  AQ 
Sbjct: 546 LVNFYAS--NQEFIRSLFELLNPKNSDMAEEKQESSSVFNNKTIVLTGTLSKPRQEYAQ- 602

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +  LGA +++ +S KTD +I G+NPGSKL  AQ+ GV ++NEE+ L  L++ +
Sbjct: 603 MLENLGAKIASSVSTKTDFLIAGENPGSKLSLAQKHGVSVLNEEELLKHLKELD 656


>gi|317009372|gb|ADU79952.1| NAD-dependent DNA ligase LigA [Helicobacter pylori India7]
          Length = 656

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 231/714 (32%), Positives = 358/714 (50%), Gaps = 65/714 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++  + +  L   +S+H   YY    PI+ D+ YD L +   A     P   ++   N
Sbjct: 4   SQKEYLERIGYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQA---N 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+G        K  H +   SL+ ++N  +L+ ++ RI + +      S  F   P
Sbjct: 57  SPTQKVGATTTNPFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSP 111

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y+ GK V A  RG+G  GE VSA  + I  IP   ++     IE+RGEV 
Sbjct: 112 KLDGVSLNLLYQHGKLVSATTRGNGLEGELVSANAKHIANIPH--AIAYKGEIEIRGEVI 169

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ISK DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F 
Sbjct: 170 ISKEDFEALNKERLDANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E L  +  LGF     +        I   Y+ +   R +    +DG+V  V+E ++
Sbjct: 230 -SFKECLDFIVSLGFSAIQYLNLNKNHQEIEENYHTLIRERESFFALLDGMVIVVNELNI 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK+LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT A
Sbjct: 289 QKELGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVAILEPVEIAGAIITKA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   I+            ++I + DRV+V R+G+VIPK++  +   R         P
Sbjct: 349 TLHNYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + +
Sbjct: 398 KVCPICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVI 448

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+ +     I    D++ L+        K      F      NL D+I K +N  L 
Sbjct: 449 EQLFEEK----LIVNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLW 498

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I +LGI H+G   +++LAKY L          N +  +  ++L +      G  +A++
Sbjct: 499 RLINALGIEHIGKGASKTLAKYGL----------NALEKSEAEFLEM---EGFGVEMARS 545

Query: 612 IVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +V FY +  N   + +L   ++P    +   ++  SS   NK +V TGTL K ++  AQ 
Sbjct: 546 LVNFYAS--NQEFIRSLFDLLNPKNSGVTEEKQKSSSVFSNKTIVLTGTLSKPRQEYAQ- 602

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +  LGA +++ +S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++ +
Sbjct: 603 MLENLGAKIASSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKELD 656


>gi|157164612|ref|YP_001467146.1| NAD-dependent DNA ligase LigA [Campylobacter concisus 13826]
 gi|190359238|sp|A7ZED8|DNLJ_CAMC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|112801346|gb|EAT98690.1| DNA ligase, NAD-dependent [Campylobacter concisus 13826]
          Length = 647

 Score =  628 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 210/701 (29%), Positives = 347/701 (49%), Gaps = 61/701 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E       ++     YY   +P+  D EYDAL     A   A P          P  +
Sbjct: 3   KQEYEKAVDTLNAWAKAYYDEDEPLASDEEYDALYHAVLAFEQANPSEISLF---SPTKR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K +H     S+E I+++ +L  ++ R  +        ++ F  EPK DG 
Sbjct: 60  VGGGVKEGFSKASHIKRMWSMEDIFSLGELDAWLKRGEK-------ENLTFVAEPKFDGA 112

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G  V A  RGDG +GEDV+   R I ++P+ +S     +IE+RGEV I K+D
Sbjct: 113 SLNLLYENGVLVRAITRGDGVTGEDVTQNARTISSVPKSIS--YKGLIEIRGEVVIRKDD 170

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E    G  P +NPRNAA+G LR+L+      R L F   G+G+ S +  K   E
Sbjct: 171 FELLNMERAKEGEAPLSNPRNAAAGSLRQLDSAVTAKRKLLFIPWGVGEQS-LGLKDHSE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +++ +R LGF  ++  +       + + YNE+ + R +    +DG+V +V++ +  +QLG
Sbjct: 230 VMKFVRDLGFERDDFFKILKK-DELEAAYNELLANRDSKSVMMDGMVIRVNDLARCEQLG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M++ KF   +  TRL D+ +Q+GR+G++TPV  L+ VNI GA + +ATLHN 
Sbjct: 289 YTVKFPKFMVAFKFPAIEKVTRLKDVALQVGRSGVVTPVGVLDEVNIDGANVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            +   D + + R+G+VIPK+  +  + R    Q    P FCP+
Sbjct: 349 DEIERL-----------GVMKNDYIGIIRSGDVIPKITKVFKDRRDGSEQAIERPKFCPV 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++              +C   L+C A+ +  + H+ S+   NI+GLG   ++  F 
Sbjct: 398 CGSHLL--------DEGVFVKCQN-LSCRARVVGSIIHYASKKCLNIDGLGDAIVNLLFD 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I    DI+ L+     S        GF +  V NL ++I   +   L RFI  
Sbjct: 449 K----GLIACIKDIYGLKFDDLMSLE------GFKEKKVNNLLNAIEASKGAELSRFITG 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG  H+G   A+ LA  +             +   +  +  L  +   G  +A ++++F 
Sbjct: 499 LGCEHIGEVAAKKLASSFG------------LDWLDASFEELTALEGFGVEMANSLIDF- 545

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N   + AL + V PS+ + +  +S+ +  K +V TGTL +  R + +  +   GA 
Sbjct: 546 -AEVNRDEILALSQIVQPSVTQVQS-ISNALSGKTVVITGTLSRP-RDEIKAELESFGAK 602

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD ++ G+  GSKL+KA +LGV +++E ++  L
Sbjct: 603 VSGSVSKKTDFVLAGEEAGSKLDKANELGVLVIDESEYERL 643


>gi|302344112|ref|YP_003808641.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075]
 gi|301640725|gb|ADK86047.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075]
          Length = 691

 Score =  628 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 229/723 (31%), Positives = 363/723 (50%), Gaps = 38/723 (5%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E  S+  A + ++ L +E+      YY   +  + D+ YD      + +   FP L  +
Sbjct: 1   MEKPSLSAAARRVAQLSEELRRWSRVYYNEGRQEVADALYDQRFAELEELERLFPMLRLA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++G     S   V+H  P LSLE   +   +   + R+              
Sbjct: 61  ---DSPTRRVGAPPQSSFAAVSHFRPMLSLESRGDFGLVGDLLRRLADA----GQPEAAI 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             +PKIDG  I + YE      A+ RGDG  G+DV+   R +  IP  L    P ++ VR
Sbjct: 114 LAQPKIDGLSIELVYENNLLRTASTRGDGVVGDDVTTNARVVGGIPHALEGLAPALVVVR 173

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY+ +  FL LN +++A G+  +ANPRNAA+G LR+ +P     R L FFV  L    
Sbjct: 174 GEVYMDRAGFLDLNRQLVAQGQDGFANPRNAAAGSLRQQDPFVTAGRPLRFFVFELVNAD 233

Query: 248 EIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           ++      + L+ +   GFP  ++ +R       +   + +  + R+ LP+DIDG+  KV
Sbjct: 234 DLGLASDSDALRLLGQWGFPLTDDHLRLGRGAEFVRQAHADYLARRAELPFDIDGVALKV 293

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +L+  LG+R+R+PRW ++ KF  +Q  T +LD+ +Q+GRTG LTPVA LEPV+IGG 
Sbjct: 294 DDLALRGVLGQRSRTPRWAVAWKFPPRQEVTPVLDVVVQVGRTGKLTPVALLEPVDIGGV 353

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN + +  L           D+RVGD   ++RAG+VIP+V  +          
Sbjct: 354 TVARATLHNFEEVARL-----------DLRVGDLARMERAGDVIPRVAGVARQAPPERRG 402

Query: 427 P-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           P    P+ CP+C + +VRD      +    HRC   L C AQQ   L+HF SR A ++EG
Sbjct: 403 PAIVAPTHCPVCGATIVRD------EGGVNHRCPNSLGCPAQQKAALRHFASRAAMDVEG 456

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++  ++       +     ++ L  R+     ++  + G+G++S  NL  +I   
Sbjct: 457 LGGKNVEALWER----GFLSDLPSLYALAARR----DELAGLRGWGELSADNLLRAIAAT 508

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--AHNNDDWLSLIRVPL 603
           +  +L+RFIF+LGI  VG E A+ LA+   S +      +     A +    L L  +  
Sbjct: 509 KGAALDRFIFALGIPGVGQETAKLLAQRLGSLEALVAAADGWRKPAKDRPAGLYLDDIAG 568

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662
           VG   A+ I  F+Q P+       L + V P+          + +  K +VFTG L+ + 
Sbjct: 569 VGPKTAEDIQRFFQTPQTRQTALKLAELVGPTWAESPTPRAGAPLAGKTIVFTGRLEGLS 628

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A+      GA V+  +SR TD +++G+NPG KL +A++LGV  M   +FL L     
Sbjct: 629 RPQAKALAEAAGAKVAGQVSRSTDWLVLGENPGGKLGEARKLGVPTMTLAEFLTLAADRP 688

Query: 723 TTL 725
             +
Sbjct: 689 AAV 691


>gi|261839558|gb|ACX99323.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 52]
          Length = 657

 Score =  628 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 232/710 (32%), Positives = 360/710 (50%), Gaps = 61/710 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK D
Sbjct: 60  QKVGATTPNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKFD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVSANAKHIANIPHAIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +     +  I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFNSIQYLSLNKNYQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++ 
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEE 655


>gi|317014035|gb|ADU81471.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Gambia94/24]
          Length = 656

 Score =  628 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 224/711 (31%), Positives = 354/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   +PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEENPNRIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N  +L+ ++ RI + +      +  F   PK+D
Sbjct: 60  QKVGATATNEFSKNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----NASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK + A  RG+G  GE V+   + I  IP   S+     IE+RGEV I+K
Sbjct: 115 GVSLNLLYQHGKLISATTRGNGLEGELVTNNAKHIANIPH--SIAYSGEIEIRGEVIIAK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 EDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  VDE  +QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVDELDIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++T ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVTKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + D+V+V R+G+VIPK++  +   R    Q    P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDKVVVIRSGDVIPKIIKPLETYRDGSQQKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIVNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A ++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGL----------NVLKKSEAEFLEM---EGFGVEMAHSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P        ++  SS   NK +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKSSDTAEEKQKSSSVFSNKTIVLTGTLSKPRQEYAQ-ILE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +++ +S KTD +I G+N GSKL  A++ GV ++NEE+ L  L++ +
Sbjct: 606 NLGAKIASSVSAKTDFLIAGENAGSKLALAKKHGVSVLNEEELLKRLKELD 656


>gi|170781460|ref|YP_001709792.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|190359244|sp|B0RGA7|DNLJ_CLAMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169156028|emb|CAQ01163.1| DNA ligase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 847

 Score =  628 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 218/786 (27%), Positives = 352/786 (44%), Gaps = 99/786 (12%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            +E A   +  L  EI  H D YY  +   + D+EYDAL+R   AI  A P L      +
Sbjct: 22  DLEAASARVDELRAEIERHRDAYYGETGGTVSDAEYDALERELRAIEDAHPTL---RSQD 78

Query: 73  GPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P   +GG    +    VTH+   LSL+ +++ E+L ++  ++ R   +     + +  E
Sbjct: 79  SPTQTVGGRAETTLFAPVTHAERMLSLDNVFSEEELAEWAAKVERDAGR---GRVRYLSE 135

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
            KIDG  I +RYE G  V AA RGDG  GEDV+  +  + T+P  L     P ++EVRGE
Sbjct: 136 LKIDGLAINLRYEHGVLVTAATRGDGVVGEDVTQNVLTMGTVPERLAGSGHPPLVEVRGE 195

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT----------DITRYLNFFV 240
           ++    +F  LN   + VG + +ANPRNAA+G LR+                 R L   V
Sbjct: 196 IFFPVAEFDELNARQLEVGERVFANPRNAAAGSLRQKEEGKSPARLELMHARIRRLRMLV 255

Query: 241 HGLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           HG+G         +     Q E+   +   G P++   R  +    +  +     + R+ 
Sbjct: 256 HGIGAWPVRELERDAHVSAQSEVYGLLEAWGLPISTHFRVFDDIAEVAGFVRRQGADRAA 315

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + IDG+V KVD+  L ++LG  +R+PRW  ++K+  ++ +T LLDI + +GRTG  TP
Sbjct: 316 VEHQIDGIVVKVDDLGLHEELGATSRAPRWATAYKYPPEEVNTTLLDIVVSVGRTGRATP 375

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A +E V + G+ +  ATLHN+  +K            + + +GD V++++AG+VIP+V+
Sbjct: 376 FAVMEKVEVAGSEVRQATLHNQQVVKA-----------KGVLIGDTVVLRKAGDVIPEVL 424

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +V  R      F  P+ CP CQ+ +         +     RC    +C AQ   R++H
Sbjct: 425 GPVVELRTGKEHEFVMPTLCPECQTPL-----KPAKEGDIDLRCPNARSCPAQVRGRVEH 479

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTLQ-----------RRQQTSTT 522
             SR A +IEGLG+       +  +P    +   A +F L            R  +T   
Sbjct: 480 VASRGALDIEGLGEVAAAALTQPLEPEDPPLETEAGLFELTMADLVPITVVVRDAETGMV 539

Query: 523 KIENILGFGD-------------------------------VSVTNLYDSINKRRNISLE 551
           K++   G                                   S   L +++ K +   L 
Sbjct: 540 KVDEKTGEAKRVTPFRRKRVLKRDGAFDPAEPWGDEASVPSKSAEVLLENLEKAKTQDLW 599

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   AR+LA ++ S           +A           V  VG IIA A
Sbjct: 600 RILVALSIRHVGPVAARALAGWFGSLDVIRAASREELAA----------VDGVGGIIADA 649

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR------HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++++++   +   V    K    +                 +    +V TG+L+   R  
Sbjct: 650 LLDWFEVDWHREIVARWEKAGVVTAVPGHPGPGAAAAAGGVLAGLAVVATGSLEGYTREG 709

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           A E +   G    + +S+KT  +  G   GSKL KA+ LGV+I++  +F  L++Q    +
Sbjct: 710 ALEAIMAAGGKAGSSVSKKTHYVAAGPGAGSKLGKAEALGVRIIDAAEFRLLVEQGPDAI 769

Query: 726 RIHDDD 731
            + + D
Sbjct: 770 ALPEAD 775


>gi|57238218|ref|YP_178701.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni RM1221]
 gi|81353856|sp|Q5HVI4|DNLJ_CAMJR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57167022|gb|AAW35801.1| DNA ligase, NAD-dependent [Campylobacter jejuni RM1221]
 gi|315058000|gb|ADT72329.1| DNA ligase [Campylobacter jejuni subsp. jejuni S3]
          Length = 647

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 213/704 (30%), Positives = 352/704 (50%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R          D       + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ ++    E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIA--YKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F K   E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTK-HSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+  +R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLVLREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G +TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGAITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+          E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HKK----ITTLESIFHLK------FNDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +   + + Q            + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFGK-EWYKQ-----------SFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSRP-RDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|315586702|gb|ADU41083.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 35A]
          Length = 656

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 231/711 (32%), Positives = 362/711 (50%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +         F   PK+D
Sbjct: 60  QKVGAITTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAYPST-----SFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP V++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHVIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      ++NPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 KDFDALNKERLNANEPLFSNPRNAASGSLRQLDSKITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQHLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|205355436|ref|ZP_03222207.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346670|gb|EDZ33302.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 647

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 216/704 (30%), Positives = 354/704 (50%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R   A      D       + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E ++N  +LR +  R              F +EPK DG 
Sbjct: 60  IAPIIQSEFKKIAHLKRMWSMEDVFNEGELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ ++    E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIA--YKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F K   E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSMTKERNLKFYPWGVGENTLNFTK-HSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+  +R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLVLREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HKK----ITTLESIFHLK------FSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFGK------------EWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E    S I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDSMIFGKTFVITGTLSRP-RDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK +NE  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCINESAFNELVKE 647


>gi|118444950|ref|YP_878905.1| NAD-dependent DNA ligase LigA [Clostridium novyi NT]
 gi|166215579|sp|A0Q2Q3|DNLJ_CLONN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118135406|gb|ABK62450.1| DNA ligase, NAD-dependent [Clostridium novyi NT]
          Length = 664

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 198/713 (27%), Positives = 352/713 (49%), Gaps = 58/713 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +  +  L +E++     YY    P + D +YD    +   +            P  
Sbjct: 1   MEDKKLLIYELVEELNKLAYEYYVLDNPSVSDKDYDKKYDKLVELEKE----TGLVLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G  +     K TH     SL K  +++++  +  +  +   + +         I 
Sbjct: 57  PTQRVGDVVLSKFDKYTHKGKLWSLGKAQSLKEVEDWHNKNVKAVNEYNLTHDDKLPPIK 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  I   Y E G  V AA RG G  GE+++A  + I TIP  L ++   +IE
Sbjct: 117 YIITKKFDGLTINCTYNEDGILVTAATRGTGEIGEEITAQAKTIKTIP--LKIDNDAVIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           V GE  ++K  F   N   +     P  N RN A+G LR LN  +  R  L+ F + +G 
Sbjct: 175 VHGEAIMTKEAFEEYNKVAV----VPLKNLRNGAAGALRNLNVKETARRNLSAFFYDIGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EML+ ++  G P+++   + +T   I    N ++ IR+ L YDIDG V  
Sbjct: 231 NEGTPFKTYGEMLKFIKDHGIPMDDYAMECSTIEEIEKEINYIEEIRNKLNYDIDGAVIA 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W +++KF  ++A+T+LL+++  +GR+G +TP A LEPV IGG
Sbjct: 291 VDDMKTRELLGYTVKFPKWALAYKFEAQEATTKLLEVEWNVGRSGRVTPTAILEPVEIGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D I+            + +++G  V ++R+ +VIP+++ ++  E    +
Sbjct: 351 VTVKRATLNNMDDIER-----------KGVKLGSTVFLRRSNDVIPEIMGVV-EESLEGS 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P+ CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KDIEAPTTCPYCGSEIVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+       I+  +D++ +++           +  FG+    NL D+I   
Sbjct: 451 FSEKTAEQLFEE----LEIKSISDLYRIKKEDLL------KLNRFGEKKAQNLIDAIESS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L  FI++LGI +VG + +  L K + +  N  +            +  L+ V  +G
Sbjct: 501 KECDLPSFIYALGIPNVGKKTSTDLCKKFKTLDNLKKA----------KFEELVSVEDIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           DI+AQ++++F+ +   + +++ LL        + E+   +    K +V TG+L    R++
Sbjct: 551 DIVAQSVLDFFNDETILKSIDELLSLGVTPKFKEEEIKENIFNGKTVVVTGSLSSFSRNE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +E +  LGA V+  +S+KTD ++VG +PGSK EKA QL +KI++EE F  ++
Sbjct: 611 IKEKLQSLGAKVAGSVSKKTDYVLVGKDPGSKYEKALQLNIKIISEEDFKNMI 663


>gi|308063596|gb|ADO05483.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Sat464]
          Length = 656

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 230/711 (32%), Positives = 361/711 (50%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +         P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKVYEEKNPNNIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITTNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ N  E IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYN--EEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+++      R L F   G+GK S +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQIDSEITKKRKLQFIPWGVGKHS-LNFSSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    +   ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTEEKQENSSVFNHKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|297379814|gb|ADI34701.1| DNA ligase, NAD-dependent [Helicobacter pylori v225d]
          Length = 656

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 230/711 (32%), Positives = 361/711 (50%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTPNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVSANAKHIANIPHAIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L          N++  +  ++L +      G  + +++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMVRSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFNHKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656


>gi|168186072|ref|ZP_02620707.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
 gi|169295952|gb|EDS78085.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
          Length = 664

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 199/713 (27%), Positives = 352/713 (49%), Gaps = 58/713 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +  +  L +E++     YY    P + D +YD    +   +            P  
Sbjct: 1   MEDKKLLIYELVEELNKLAYEYYVLDNPSVSDKDYDKKYDKLVELEKE----TGLVLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G  +     K TH     SL K  +++++  +  +  +   + +         I 
Sbjct: 57  PTQRVGDVVLSKFNKYTHKGKLWSLGKAQSLKEVEDWHNKNVKVVNEYNLTHEDKLPPIK 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  I   Y E G  V AA RG G  GE+++A  + I TIP  L ++   +IE
Sbjct: 117 YIVTKKFDGLTINCTYNEDGILVTAATRGTGEIGEEITAQAKTIKTIP--LKMDNHAVIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245
           V GE  ++K  F   N   +     P  N RN A+G LR LN  +  R  L+ F + +G 
Sbjct: 175 VHGEAIMTKEAFEEYNKVAV----VPLKNLRNGAAGALRNLNVKETARRNLSAFFYDIGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EML+ ++  G P+++   Q +T   I    N ++ IR  L YDIDG V  
Sbjct: 231 NEGTPFKTYSEMLKFIKEHGIPMDDYAEQCSTVEEIEKEINYIEEIRDKLNYDIDGAVIA 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W +++KF  ++A+T+LL+++  +GR+G +TP A LEPV IGG
Sbjct: 291 VDDMRTRELLGYTVKFPKWALAYKFEAQEATTKLLEVEWNVGRSGRVTPTAILEPVEIGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D I+            + +++G  V ++R+ +VIP+++ ++  E    A
Sbjct: 351 VTVKRATLNNMDDIER-----------KGVKLGSTVFLRRSNDVIPEIMGVV-EESLEGA 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P+ CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KDIKSPTTCPYCGSEIVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+       I+  +D++ +++           +  FG+    NL D+I   
Sbjct: 451 FSEKTAEQLFEE----LDIKSISDLYRIKKEDLL------KLNRFGEKKAQNLIDAIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++  L  FI++LGI +VG + +  L K + +  N  +               L+ V  +G
Sbjct: 501 KDCDLPSFIYALGIPNVGKKTSTDLCKKFKTLDNLKEA----------KIEELVSVEDIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           DI+AQ++++F+ +   + +++ LL        + E+   +    K +V TG+L    R++
Sbjct: 551 DIVAQSVLDFFNDDTILKSIDELLSLGVIPKFKEEEIEENIFNGKTVVVTGSLSSFSRNE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +E +  LGA V+  +S+KTD ++VG +PGSK EKA QL +KI++E++F  ++
Sbjct: 611 IKEKLQSLGAKVAGSVSKKTDYVLVGKDPGSKYEKAVQLNIKIISEDEFKNMI 663


>gi|217033559|ref|ZP_03438988.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10]
 gi|216944084|gb|EEC23515.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10]
          Length = 656

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 232/711 (32%), Positives = 364/711 (51%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNGIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G   + S  K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITSNSFNKNSHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQENSSAFSHKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|15645240|ref|NP_207410.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 26695]
 gi|3182983|sp|O25336|DNLJ_HELPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2313737|gb|AAD07680.1| DNA ligase (lig) [Helicobacter pylori 26695]
          Length = 656

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 234/714 (32%), Positives = 364/714 (50%), Gaps = 65/714 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++  + ++ L   +S+H   YY   +PI+ D+ YD L +   A     P+  ++   N
Sbjct: 4   SQKEYLERIAYL-NTLSHH---YYNLDEPIVSDAIYDELYQELKAYEEKNPNGIQA---N 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   P
Sbjct: 57  SPTQKVGATTTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSP 111

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV 
Sbjct: 112 KLDGVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYN--GEIEIRGEVI 169

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ISK DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F 
Sbjct: 170 ISKKDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++
Sbjct: 230 -SFKECLDFIVSLGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVNELNI 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK+LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+I  A
Sbjct: 289 QKELGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMINRA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   I+            ++I + DRV+V R+G+VIPK++  + + R         P
Sbjct: 349 TLHNYSEIEK-----------KNIMLSDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + +
Sbjct: 398 KVCPICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVI 448

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+ +     I    D++ L+        K      F      NL D+I K +N  L 
Sbjct: 449 EQLFEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAILKSKNPPLW 498

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A++
Sbjct: 499 RLINALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARS 545

Query: 612 IVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +V FY +  N   + +L + ++P    +   ++  SS   NK +V TGTL K ++  AQ 
Sbjct: 546 LVNFYAS--NQEFIRSLFELLNPKNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ- 602

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +  LGA +S+ +S KTD +I G+NPGSKL  AQ+ GV ++NEE+ L  L++ +
Sbjct: 603 MLENLGAKISSSVSAKTDFLIAGENPGSKLALAQKHGVSVLNEEELLKRLKELD 656


>gi|315606212|ref|ZP_07881239.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312100|gb|EFU60190.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 777

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 207/791 (26%), Positives = 350/791 (44%), Gaps = 99/791 (12%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           ++P+   + E  RK    L + I      YY    P I D++YD + R  + I   +P L
Sbjct: 1   MVPMSDPTFETTRKRYDELVRSIEEARAAYYDRDSPTISDADYDRMYRELEEIEERYPQL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
             +   + P   +GG ++ S  +V H    +SL+ ++++E+L  +  RI       D   
Sbjct: 61  RGA---DSPTMSVGGSVDSSFTEVRHLAQMMSLDDVFSLEELAGWEARISEATGIVD--- 114

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
              T E K+DG  I + YE+G+ V AA RGDG+ GED++A  R I +IP+ L+  +P  I
Sbjct: 115 PPMTTEVKVDGLSINLLYEEGRLVRAATRGDGYVGEDITANARTIASIPQTLTGPVPRRI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEVY    DF A N+  +A G K + N RNAA+G LR+ +P +   R L    HG+G
Sbjct: 175 EVRGEVYFPVADFAAFNEARVAAGEKAFVNARNAAAGSLRQKDPAETAKRPLAMVAHGIG 234

Query: 245 KTSE----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
                        Q    +++R  G PV+   R       I     ++ + R +L ++ID
Sbjct: 235 FVEAGEGFAEPTTQQGWYEQLRDWGLPVSPYTRLLTGRKAIEERIEQIGAQRHSLDHEID 294

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+++ +LQ+ LG  +R+PRW  ++KF  ++  TRLLDI +Q+GRTG +TP   +E 
Sbjct: 295 GVVVKINDLALQRSLGSTSRAPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMES 354

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ ++ ATLHN   +             + + +GD V++++AG+VIP++V  +++ 
Sbjct: 355 VLVAGSNVSRATLHNAQEVAR-----------KGVLIGDLVVLRKAGDVIPEIVAPVMDA 403

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R+   +PF  PS CP C + +V++      +     RC    AC AQ  ERL H  +R A
Sbjct: 404 RNGSERPFVMPSECPSCATPLVQEK-----EGDVDLRCPNKGACPAQITERLAHVGARSA 458

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSI---RIPADIFTLQRRQQTSTTKIENIL-GFGDVSVT 536
            ++EGLG +      + E+    +    +     TL+     +      +  G       
Sbjct: 459 LDVEGLGDESALAMTQPENDRDEVAAALVAGRSVTLEDGTVLTLEGARELPHGEQITRAE 518

Query: 537 NLYDSINKR-----------RNISLERFIFSLGIRHVGAEIARSLAKYYL---------- 575
            L  +               R   L   +    +++ G +        Y           
Sbjct: 519 ALLPAPQAPVLTSEAVLFDLRAEDLRDVMVWKPVKNKGEKTGDWRQVRYFWTKAYKPRKL 578

Query: 576 ---------------SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA--------- 611
                            +    E++          L  + +  VG   A+A         
Sbjct: 579 RGQTVYEPVETSASKGTEKMLAELDKAKNQPLARVLVALSIRHVGPTAARALADAFRSMD 638

Query: 612 -----------------------IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
                                  + +++    ++  +EA  +          + VS  + 
Sbjct: 639 ALRAASLEELSAVEGVGEEIGRSLRDWFTVDWHLAVLEAWARAGVRMADEEREAVSDVLA 698

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
              +V +G +    R  A+E +T  G   +  +S+KT +++ G   GSK  KA+ LGV +
Sbjct: 699 GLTIVVSGAMPGYDREGAKEAITSRGGKAAGSVSKKTSLVVAGPGAGSKAAKAEALGVPV 758

Query: 709 MNEEQFLFLLQ 719
           + E+QF  LL+
Sbjct: 759 ITEQQFADLLE 769


>gi|86151833|ref|ZP_01070047.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841462|gb|EAQ58710.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 647

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 209/704 (29%), Positives = 353/704 (50%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYD L R          D       + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDVLIRELRVFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ ++    E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIA--YKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F K   +
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTK-HSD 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ ++       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HKK----ITTLESIFHLK------FSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFGK------------EWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RV--NRTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSRP-RDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|207092489|ref|ZP_03240276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_AG0C1]
          Length = 656

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 230/714 (32%), Positives = 361/714 (50%), Gaps = 65/714 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++  + ++ L   +S+H   YY    PI+ D+ YD L +   A     P+  ++   N
Sbjct: 4   SQKEYLERIAYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---N 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   P
Sbjct: 57  SPTQKVGAITTNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSP 111

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y+ GK V A  RG+G  GE V+   + I  IP  ++ N  E IE+RGEV 
Sbjct: 112 KLDGVSLNLLYQHGKLVSATTRGNGLEGELVTNNAKHIANIPHSIAYN--EEIEIRGEVI 169

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ISK DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F 
Sbjct: 170 ISKKDFDALNQERLDANEPLFANPRNAASGSLRQLDSNITKKRKLQFIPWGVGKHSLNFL 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E  +
Sbjct: 230 -SFKECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELGI 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK+LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA++T A
Sbjct: 289 QKELGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVTKA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   I+            ++I + DRV+V R+G+VIPK++  + + R         P
Sbjct: 349 TLHNYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + +
Sbjct: 398 KVCPICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVI 448

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+ +     I    D++ L+        K      F      NL D+I K +N  L 
Sbjct: 449 EQLFEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAILKSKNPPLW 498

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I +LGI H+G   +++LA+Y L          N++  +  ++L +      G  +A++
Sbjct: 499 RLINALGIEHIGKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARS 545

Query: 612 IVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +V FY +  N   + +L   ++P    +   ++  SS   NK +V TGTL K ++  AQ 
Sbjct: 546 LVNFYAS--NQEFIRSLFDLLNPKNSDMTEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQT 603

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
               LGA +S+ +S KTD +I G+NPGSKL  A++ GV ++NEE+ L  L++ +
Sbjct: 604 L-ENLGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKELD 656


>gi|108563021|ref|YP_627337.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPAG1]
 gi|123246990|sp|Q1CTQ9|DNLJ_HELPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|107836794|gb|ABF84663.1| DNA ligase [Helicobacter pylori HPAG1]
          Length = 656

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 230/714 (32%), Positives = 359/714 (50%), Gaps = 65/714 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++  + ++ L   +S+H   YY    PI+ D+ YD L +   A     P   ++   N
Sbjct: 4   SQKEYLERIAYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQA---N 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+G        K  H +   SL+ ++N  +L+ ++ RI + +      S  F   P
Sbjct: 57  SPTQKVGATATNPFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSP 111

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y  GK + A  RG+G  GE VSA  + I  IP   ++     IE+RGEV 
Sbjct: 112 KLDGVSLNLLYHHGKLISATTRGNGLEGELVSANAKHIANIPH--AIAYKGEIEIRGEVI 169

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ISK DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F 
Sbjct: 170 ISKKDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++
Sbjct: 230 -SFKECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNI 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK+LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+I  A
Sbjct: 289 QKELGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAMINRA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   I+            ++I + DRV+V R+G+VIPK++  + + R         P
Sbjct: 349 TLHNYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + +
Sbjct: 398 KVCPICSYELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVI 448

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+ +     I    D++ L+        K      F      NL D+I K +N  L 
Sbjct: 449 EQLFEEK----LIVNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLW 498

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A++
Sbjct: 499 RLINALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARS 545

Query: 612 IVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +V FY +  N   + +L + ++P    +   ++  SS   NK +V TGTL K ++  AQ 
Sbjct: 546 LVNFYAS--NQEFIRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ- 602

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +  LGA +S+ +S KT+ +IVG+N GSKL  AQ+ GV ++NEE+ L  L++ +
Sbjct: 603 MLENLGAKISSSVSAKTNFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKELD 656


>gi|317010835|gb|ADU84582.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SouthAfrica7]
          Length = 657

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 229/712 (32%), Positives = 361/712 (50%), Gaps = 60/712 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   +PI+ D+ YD L +   A     P   ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEENPSYIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N ++L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTPNPFNKNPHLMRMWSLDDVFNYDELQTWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE V+   + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVTTNAKHITNIPHAIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 EDFDALNKERLDANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E + QK+
Sbjct: 232 KECLDFIVSLGFSAIKHLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNTQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIMRPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+++     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEAK----LIVNALDLYALKLEDLIQLDK------FKMKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           FY +  N   +++L   ++P  S    ++  SS   +K +V TGTL K ++  AQ  +  
Sbjct: 549 FYAS--NQEFIQSLFDLLNPKNSDIEEKQESSSIFSHKIIVLTGTLSKPRQEYAQ-ILEN 605

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           LGA +S+ +S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++ ++ 
Sbjct: 606 LGAKISSSVSAKTDFLIVGENAGSKLSLAKKHGVSVLNEEELLKYLKELDSN 657


>gi|148925946|ref|ZP_01809633.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844932|gb|EDK22036.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 647

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 214/704 (30%), Positives = 354/704 (50%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R          D       + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELSVFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPIIQSEFKKIAHLRRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ ++    E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIA--YKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F K   E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTK-HSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HKK----ITTLESIFHLK------FSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFGK------------EWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E    S I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDSMIFGKTFVITGTLSRP-RDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK +NE  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCINESAFNELVKE 647


>gi|308182775|ref|YP_003926902.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4]
 gi|308064960|gb|ADO06852.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4]
          Length = 656

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 227/711 (31%), Positives = 355/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   + I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E  +QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELGIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA++T ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVTKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  +   R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+                   +  + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNV-------------LEKSEVEFLEMEGFGAEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    +   ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTEEKQESSSVFNHKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|325479535|gb|EGC82631.1| DNA ligase (NAD+) [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 669

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 192/712 (26%), Positives = 346/712 (48%), Gaps = 58/712 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             R+E++ L +EI+  +  YY   +P++ D EYD +  R   +       +   + N P 
Sbjct: 2   DIREEINQLIEEINRLNYHYYTLDEPLVSDGEYDEIYDRLVKLEDK----SGYINENSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFT 129
            K+GGE+     K  H    LS +K    + L  +I R  R  +  ++        + F 
Sbjct: 58  QKVGGEVLEKFEKHFHITKLLSQDKAQTYDKLEDWINRANRLRRDYNNSHDDQLEKLTFI 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K DG  + + Y+ G  V AA RG+G  GE++SA +  I +IP+ +      ++E++G
Sbjct: 118 MEYKFDGLTVNLTYDDGALVNAATRGNGTVGEEISAQVNTIKSIPKRIEEK--SLLEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E  +  ++    N+           N RNAA+G LR LNP +   R L  + + +  T+ 
Sbjct: 176 EALMPLSELKKYNE----NNEVQLKNARNAAAGALRNLNPKETAKRNLTAYFYSIP-TNN 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  K + EML+ ++  G   +   ++ N    I++    +K  R+TL    DG+V K+++
Sbjct: 231 LDFKSEEEMLEFLKKQGLQTHPYHKKVNNLDDIIAELERIKEERTTLDILTDGVVIKIND 290

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+ LG   + PRW I++K+  ++ +T L ++   +GRTG +TP A LEPV+  G  +
Sbjct: 291 KKTQEVLGTTNKFPRWSIAYKYEAEEFTTTLKEVVWNVGRTGKVTPSAILEPVDFSGVTV 350

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T ATL+N D I             + +++G +V ++R+ +VIP+++ ++  ++       
Sbjct: 351 TRATLNNYDDI-----------LRKKVKIGSKVFIRRSNDVIPEILGVVDEDQPG-TLEI 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C S ++        +      C   ++C  Q L +++HF SR+A +IEGL +
Sbjct: 399 EKPKHCPYCGSELI--------EGNVHIICPNSISCKPQLLAKMEHFASRNAMDIEGLSE 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +         A  I    DI+ L            N+  FGD    NL ++I   + +
Sbjct: 451 KTISQLMD----ALDINEIDDIYDLTYDMLI------NLDRFGDKKTNNLLNAIEASKKV 500

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FI+++GI +VG   +R LA  + S+    Q     +          + V  +G+I 
Sbjct: 501 DLNNFIYAIGIPNVGERTSRDLANKFKSFDRLRQAKEEEL----------VDVEDIGEIT 550

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           AQ I+E++ +P    +++ LL++        E N S+ +E+   V TGT++  +R   + 
Sbjct: 551 AQNIIEYFNDPNIKRSIDILLEKGIEISNPKEDNKSNGLEDMTFVITGTIENYKRDDIKN 610

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +    V+  +S+ TD ++ GD  GSK +KA  LG++I   ++    L++
Sbjct: 611 LIEKNAGKVTGSVSKNTDYVLCGDKAGSKKDKALNLGIEIYEGDKLYEFLEK 662


>gi|81390835|sp|Q6AEE5|DNLJ_LEIXX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50951550|gb|AAT89251.1| DNA ligase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 747

 Score =  625 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 221/774 (28%), Positives = 340/774 (43%), Gaps = 95/774 (12%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
              AR E   L   I    D YY+    ++ D EYD + RR + +    P+L   +  + 
Sbjct: 2   AADARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPEL---QSQDS 58

Query: 74  PLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P   +GG    +    V H+   LSL+ +++ E    +  +I R   ++ D    +  E 
Sbjct: 59  PTQTVGGRAQTTLFAPVEHAERMLSLDNVFSFEAFEAWAAKIERDAGRRVD----YLCEL 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGE 190
           KIDG  I +RYE G  V AA RGDG  GEDV+  IR IP I + LS     P ++EVRGE
Sbjct: 115 KIDGLAINLRYENGVLVTAATRGDGVVGEDVTENIRHIPAITQRLSGAGPFPPVVEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYL--------NFFV 240
           V+     F  LN    A G + +AN RNAASG LR+         R L           V
Sbjct: 175 VFFPVAKFEELNANQQAAGERVFANARNAASGSLRQKAEGKNPAQRRLMRDRLGRLRMLV 234

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           HG+G         Q  + + +R  G P +   R   T      +       R T+ ++ID
Sbjct: 235 HGIGAWPNPPVATQSGVYELLRSWGLPTSAHGRVFGTVQEAADFIGRSAERRDTVEHEID 294

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVDE  L  +LG  +R+PRW I++K+  +Q +T+LLDI + +GRTG  TP A +E 
Sbjct: 295 GVVIKVDELVLHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFAVMEK 354

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ +  ATLHN+D +K            + + +GD V++++AG+VIP+V+  +V  
Sbjct: 355 VKVAGSEVRQATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEVLGPVVEL 403

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    + F+ P+ CP C + +         +     RC     C AQ   R++H  SR  
Sbjct: 404 RDGTEREFAMPTDCPECGTPL-----APAKEGDIDLRCPNAEFCPAQVRGRVEHIGSRGG 458

Query: 481 FNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTLQRRQQTSTT----------------- 522
            +IE LG+       +   P    +   A +F L+                         
Sbjct: 459 LDIEALGEVAAAALTQPRFPERAPLPTEAGLFGLRLEDLFPIEVVVRDSETGLPKLTETG 518

Query: 523 ----------KIENILGFGD---------------VSVTNLYDSINKRRNISLERFIFSL 557
                     + +   G  D                S   L  ++   R   L R + SL
Sbjct: 519 VEKVDAPFRRRRQKKDGAFDPEAEAFDGDEIAVPSKSAIELLANLRAARTKPLWRILVSL 578

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            IRHVG   AR+LA ++ S         + +A           V  VG I+A A++ +++
Sbjct: 579 NIRHVGPVAARALADHFGSLDAIRAASRDELAA----------VDGVGGIVADAVLSWFE 628

Query: 618 NPRNICAVEALLKEV------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
              +   VE   ++                     +    +V TG+L+   R  AQE + 
Sbjct: 629 IGWHCEIVENWARDGVQFAIPGHPGPGRADTGGGVLSGLTVVATGSLEGYTREAAQEAIV 688

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             G   ++ +S+KTD +  G   GSKL KA++LGV++++  QF  L++Q    L
Sbjct: 689 AAGGKAASSVSKKTDFVAAGPGAGSKLAKAEELGVRVLDAAQFTILVEQGPGAL 742


>gi|161760708|ref|YP_062356.2| NAD-dependent DNA ligase LigA [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 755

 Score =  625 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 222/778 (28%), Positives = 341/778 (43%), Gaps = 95/778 (12%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E      AR E   L   I    D YY+    ++ D EYD + RR + +    P+L   +
Sbjct: 6   EDQVAADARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPEL---Q 62

Query: 70  DPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             + P   +GG    +    V H+   LSL+ +++ E    +  +I R   ++ D    +
Sbjct: 63  SQDSPTQTVGGRAQTTLFAPVEHAERMLSLDNVFSFEAFEAWAAKIERDAGRRVD----Y 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIE 186
             E KIDG  I +RYE G  V AA RGDG  GEDV+  IR IP I + LS     P ++E
Sbjct: 119 LCELKIDGLAINLRYENGVLVTAATRGDGVVGEDVTENIRHIPAITQRLSGAGPFPPVVE 178

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYL-------- 236
           VRGEV+     F  LN    A G + +AN RNAASG LR+         R L        
Sbjct: 179 VRGEVFFPVAKFEELNANQQAAGERVFANARNAASGSLRQKAEGKNPAQRRLMRDRLGRL 238

Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
              VHG+G         Q  + + +R  G P +   R   T      +       R T+ 
Sbjct: 239 RMLVHGIGAWPNPPVATQSGVYELLRSWGLPTSAHGRVFGTVQEAADFIGRSAERRDTVE 298

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           ++IDG+V KVDE  L  +LG  +R+PRW I++K+  +Q +T+LLDI + +GRTG  TP A
Sbjct: 299 HEIDGVVIKVDELVLHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFA 358

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            +E V + G+ +  ATLHN+D +K            + + +GD V++++AG+VIP+V+  
Sbjct: 359 VMEKVKVAGSEVRQATLHNQDVVKA-----------KGVLIGDTVVLRKAGDVIPEVLGP 407

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +V  R    + F+ P+ CP C + +         +     RC     C AQ   R++H  
Sbjct: 408 VVELRDGTEREFAMPTDCPECGTPL-----APAKEGDIDLRCPNAEFCPAQVRGRVEHIG 462

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTLQRRQQTSTT------------- 522
           SR   +IE LG+       +   P    +   A +F L+                     
Sbjct: 463 SRGGLDIEALGEVAAAALTQPRFPERAPLPTEAGLFGLRLEDLFPIEVVVRDSETGLPKL 522

Query: 523 --------------KIENILGFGD---------------VSVTNLYDSINKRRNISLERF 553
                         + +   G  D                S   L  ++   R   L R 
Sbjct: 523 TETGVEKVDAPFRRRRQKKDGAFDPEAEAFDGDEIAVPSKSAIELLANLRAARTKPLWRI 582

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + SL IRHVG   AR+LA ++ S         + +A           V  VG I+A A++
Sbjct: 583 LVSLNIRHVGPVAARALADHFGSLDAIRAASRDELAA----------VDGVGGIVADAVL 632

Query: 614 EFYQNPRNICAVEALLKEV------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +++   +   VE   ++                     +    +V TG+L+   R  AQ
Sbjct: 633 SWFEIGWHCEIVENWARDGVQFAIPGHPGPGRADTGGGVLSGLTVVATGSLEGYTREAAQ 692

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           E +   G   ++ +S+KTD +  G   GSKL KA++LGV++++  QF  L++Q    L
Sbjct: 693 EAIVAAGGKAASSVSKKTDFVAAGPGAGSKLAKAEELGVRVLDAAQFTILVEQGPGAL 750


>gi|317180385|dbj|BAJ58171.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F32]
          Length = 656

 Score =  625 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 233/711 (32%), Positives = 362/711 (50%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDKLYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITPNSFNKNSHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFNSIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    I + ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDIAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L+ ++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKGFD 656


>gi|86153540|ref|ZP_01071744.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843266|gb|EAQ60477.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 647

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 211/704 (29%), Positives = 352/704 (50%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R          D       + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELSVFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPIIQSEFKKIAHLRRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK    A RGDG  GED++  +  I  IP+ ++    E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLASGATRGDGEVGEDITLNVFEIENIPKNIA--YKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F K   E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTK-HSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCTNLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HKK----ITTLESIFHLK------FSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFGK------------EWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSRP-RDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|212696137|ref|ZP_03304265.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676766|gb|EEB36373.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 668

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 189/708 (26%), Positives = 341/708 (48%), Gaps = 58/708 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L  +I+  +  YY   +PI+ D EYD L      + ++   +        P  ++G
Sbjct: 8   KIDELIDKINELNYHYYTLDEPIVSDGEYDKLYDELRELENSTGYINAF----SPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPK 133
           G +     K  H     S +K  NI+ L+ +I R  +   + ++        + F  E K
Sbjct: 64  GTILDKFEKHFHITRLYSQDKSQNIDQLKDWIIRTKKLRDQYNNSHDDKLEKLEFLTEYK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + YE G    A+ RG+G  GEDV+  +  IPTIP  +      ++E++GE  +
Sbjct: 124 FDGLTINLTYENGLLKTASTRGNGIVGEDVTKQVLTIPTIPTKIKEK--SLLEIQGEAVM 181

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
             +     N+E       P  N RNAA+G +R L+ +    R L  + + +   S +  K
Sbjct: 182 PLSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTRKRNLKAYFYQISTNS-LDFK 236

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            + + L  +     PV    +    F  IV   + +K  R  +    DG+V KV++   Q
Sbjct: 237 TEEDKLNFLEEQKLPVYPYKKLIKNFDEIVKEIDYIKEERHHIDVLTDGVVIKVNDVKTQ 296

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + PRW I++K+  ++ +T+LLD+   +GRTG +TP A LEPV+  G  +  AT
Sbjct: 297 EVLGYTNKFPRWSIAYKYDPEEYTTKLLDVVWNVGRTGKVTPSAILEPVDFSGVTVQRAT 356

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N D I             + +++G +V ++R+ +VIP+++ ++ +E   +      P+
Sbjct: 357 LNNYDDI-----------LRKKVKIGSQVFIRRSNDVIPEILGVV-DENQENTVEIKKPT 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S ++        +      C   ++C+ Q   R+ HF SRDA +IEGL ++ ++
Sbjct: 405 KCPYCHSELI--------EGNVHIYCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTVE 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         I+   D++ L+           N+  F +    NL  +I   +   L  
Sbjct: 457 LFINE----LDIKEIYDLYDLKYEDLI------NLESFKEKKTNNLLQAIENSKKCDLNH 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI+++GI +VG + AR LA+ Y S +N      + +          + V  +G+  +  I
Sbjct: 507 FIYAIGIPNVGVKTARDLAEKYKSLENLRNAKEDDL----------VEVEDIGEKTSHDI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           VEF+ +     +++ LL++        E  VS+ +E  K+V TG+++  +R+  ++ +  
Sbjct: 557 VEFFNDKNIKESIDKLLEKGIKIKKIEESEVSNSLEGMKIVITGSIENYKRNDIKKLILD 616

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               V++ +S+ TD+++ G+ PGSK EKA QLG+K++  E+    +++
Sbjct: 617 HNGDVTSSVSKNTDLVLCGEKPGSKKEKADQLGIKVLENEELFEFIRK 664


>gi|208434535|ref|YP_002266201.1| DNA ligase [Helicobacter pylori G27]
 gi|254781346|sp|B5Z6Y6|DNLJ_HELPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|208432464|gb|ACI27335.1| DNA ligase [Helicobacter pylori G27]
          Length = 658

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 227/716 (31%), Positives = 361/716 (50%), Gaps = 65/716 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++  + ++ L   +S+H   YY   + I+ D+ YD L +   A     P+  ++   N
Sbjct: 4   SQKEYLERIAYL-NTLSHH---YYNLDESIVSDAVYDELYQELKAYEEKNPNDIQA---N 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   P
Sbjct: 57  SPTQKVGATATNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKTYP-----SASFVCSP 111

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y+ GK V A  RG+G  GE V+   + I  IP  ++ +    IE+RGEV 
Sbjct: 112 KLDGVSLNLLYQHGKLVSATTRGNGLEGELVTNNAKHIANIPHFIAYD--GEIEIRGEVI 169

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ISK DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F 
Sbjct: 170 ISKEDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++
Sbjct: 230 -SFKECLDFIVSLGFSAIQYLNLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNI 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK+LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+I  A
Sbjct: 289 QKELGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMINRA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   I+            ++I + D+V+V R+G+VIPK++  +   R    Q    P
Sbjct: 349 TLHNYSEIEK-----------KNIMLNDKVVVIRSGDVIPKIIKPLETYRDGSQQKIMRP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + +
Sbjct: 398 KVCPICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVI 448

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+ +     I    D++ L+        K      F      NL D+I K +N  L 
Sbjct: 449 EQLFEEK----LIVNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLW 498

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I +LGI H+G   +++LAKY L          N++  +  ++L +      G  + ++
Sbjct: 499 RLINALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMVRS 545

Query: 612 IVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +V FY +  N   + +L + ++P    +   ++  SS   NK +V TGTL K ++  AQ 
Sbjct: 546 LVNFYAS--NQEFIRSLFELLNPKNSDMAEEKQESSSVFNNKTIVLTGTLSKPRQEYAQ- 602

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            +  LGA +++ +S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++ +  
Sbjct: 603 MLENLGAKITSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKKLDQN 658


>gi|121612203|ref|YP_001000287.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005239|ref|ZP_02270997.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166215572|sp|A1VYU6|DNLJ_CAMJJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|87250057|gb|EAQ73015.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 647

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 208/704 (29%), Positives = 354/704 (50%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYD L R          D       + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDVLIRELRVFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ ++    E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIA--YKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F K   E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTK-HSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ ++       ++  Y+E+ ++R   P  +DG+V ++D+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +  + R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HKK----ITTLESIFHLK------FSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFGK------------EWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHVR--IDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSRP-RDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS+ +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSSSVSKKTDYVLFGEEAGSKLIKAKELEVKCIDESAFNELVKE 647


>gi|109947386|ref|YP_664614.1| NAD-dependent DNA ligase LigA [Helicobacter acinonychis str.
           Sheeba]
 gi|123362647|sp|Q17XL1|DNLJ_HELAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|109714607|emb|CAJ99615.1| DNA ligase [Helicobacter acinonychis str. Sheeba]
          Length = 654

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 231/709 (32%), Positives = 360/709 (50%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   +PI+ D+ YD L +   A     P   ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEKNPSQIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H     SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATALNQFNKNPHLTRMWSLDDVFNHNELQAWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+KGK + A  RG+G  GE V+   + +  I   +  N  E IE+RGEV ISK
Sbjct: 115 GVSLNLLYQKGKLMKATTRGNGLEGELVTTNAKHVANISHTIPYN--EEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN+E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 EDFNALNEERLNANEPLFANPRNAASGSLRQLDSKITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I + Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIKHLSLNKNHQEIEANYHTLIQERERFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQCKIIRPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L CSA+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCSARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L           ++  + D++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLY----------VLEKSEDEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   +++L   ++P    I   ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIQSLFDLLNPKNSDIIEEKQESSSIFSHKTIVLTGTLSKPRQEYAQ-ILE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV I+NEE+ L  L++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLSLAQKHGVNILNEEELLKYLKE 654


>gi|261838144|gb|ACX97910.1| DNA ligase [Helicobacter pylori 51]
          Length = 656

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 230/711 (32%), Positives = 363/711 (51%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDALYDELYQELKAYEEKNPNGIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITTNSFNKNSHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++Q++
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHALIREREGFFALLDGMVIVVNELNIQRE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPIEIAGAMITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L          N++  +  ++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    I + ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDIAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKHLKEFD 656


>gi|227499502|ref|ZP_03929609.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098]
 gi|227218381|gb|EEI83632.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098]
          Length = 666

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 193/710 (27%), Positives = 341/710 (48%), Gaps = 58/710 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E+S L ++I+  +  YY   +P++ D EYD L  +   + +    +      N P   
Sbjct: 4   REEISQLIEKINELNYHYYTLDEPLVSDGEYDKLYDKLKKLENESGIVLD----NSPTQI 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLE 131
           +GG++     K  H    LS  K  +  +L  +I R  R  ++ +DN       I F +E
Sbjct: 60  VGGQILDKFEKHYHLTKLLSQNKAQSYAELEDWIDRCQRLRKEYNDNHEDKLDEIEFIME 119

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + YE GK   AA RG+G  GE++ A ++ I +IP  L++    ++E++GE 
Sbjct: 120 YKFDGLTVNLTYENGKLTSAASRGNGVVGEEILAQVKTIKSIP--LTIKEESLLEIQGEA 177

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
            +  ++    N            N RNAA+G LR L+  +  R  L  + + +  T+ + 
Sbjct: 178 LMPLSELAKYN----KDNEIQLKNARNAAAGALRNLDTRETARRNLTAYFYAVP-TNNLD 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K + +ML  ++  GF ++   ++ +    I+     ++  R  +    DG+V K+++  
Sbjct: 233 FKTEEDMLDFLKNQGFNIHPYHKKVHNLDEIIRELKFIEEERKKIDILTDGVVIKINDKK 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ L    + PRW I+ KF  ++ +T L  +   +GRTG +TP A L+PV   GA ++ 
Sbjct: 293 TQEVLSNTNKFPRWSIAFKFEAEEYTTTLRKVVWNVGRTGKVTPSAILDPVEFSGATVSR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N D I             + I++G RV ++R+ +VIP+++ ++ +E          
Sbjct: 353 ATLNNYDDI-----------LRKKIKIGSRVFIRRSNDVIPEILGVV-DENQEGTSEIEK 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P FCP C S ++++             C   ++C  Q L R++HF SR+A +IEGL ++ 
Sbjct: 401 PKFCPYCSSELIQENVHIV--------CPNSISCKPQLLARIEHFASRNAMDIEGLSEKT 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            I    DI+ L   Q     +      FGD    NL ++I   + + L
Sbjct: 453 IAQLMDE----LDINEVDDIYDLTYEQLIKLER------FGDKKTKNLLEAIENSKKVDL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           + FI+++GI +VG   +R LA  + S+                    L  +  +G+I A+
Sbjct: 503 QHFIYAIGIPNVGERTSRDLANKFKSFDKLRAS----------KVDELTDIDDIGEITAE 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            IVEF+ +P    ++E LL +        E N S  + N   V TGT++  +R   +  +
Sbjct: 553 NIVEFFSDPNISKSIENLLAKGIEISKPKEDNNSDGLNNLTFVITGTIENYKRDDIKNLI 612

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + G  V+  +S+ TDI++ G+  GSK  KA++L V+I  +++    L++
Sbjct: 613 EKNGGKVTGSVSKNTDILLAGEKAGSKKTKAEELNVEIYEDQKLYDFLKE 662


>gi|317179023|dbj|BAJ56811.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F30]
          Length = 657

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 230/710 (32%), Positives = 359/710 (50%), Gaps = 61/710 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAIYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTTNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKRIANIPHAIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHALIREREGFFVLLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L          N++  +  ++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TG L K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTKEKQKSSSVFSHKTIVLTGMLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++ 
Sbjct: 606 NLGAKISSSVSTKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEE 655


>gi|283954134|ref|ZP_06371659.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414]
 gi|283794413|gb|EFC33157.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414]
          Length = 647

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 211/704 (29%), Positives = 354/704 (50%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R   A      D       + P  K
Sbjct: 3   KEEYLEKVALANSWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEILK---DSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E ++   +LR +  R          +   F +EPK DG 
Sbjct: 60  IAPTVQSEFKKIAHLKRMWSMEDVFGESELRAWAKRAK--------SEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ ++    E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIA--YKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F+K   E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFSK-HSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ V+       ++  Y E+ ++R   P  +DG+V +VDE +L K+LG
Sbjct: 229 VMQFIRELGFLKDDFVKLCANLDEVLKAYEELLALREKKPMMMDGMVVRVDELALCKELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+       +  E + GF +  + NL ++I + R   L  FI +
Sbjct: 449 HKK----ITTLESIFYLK------FSDFEGLEGFKEKKINNLLNAIEQARECELFCFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFGK------------DWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  + + E    S I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHIR--IDEFYKLLNLKVEKLEVKSDSAIFGKTFVITGTLSRP-RDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S+K+D ++ G+  GSKL KA++LGV  ++E  F  L+++
Sbjct: 604 VNGSVSKKSDYVLFGEEAGSKLSKAKELGVNCIDESAFNELIKE 647


>gi|283955998|ref|ZP_06373487.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792474|gb|EFC31254.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 1336]
          Length = 647

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 213/704 (30%), Positives = 354/704 (50%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R          D       + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPIIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ ++    E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIA--YKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F K   E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTK-HSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+ ++R   P  +DG+V +VD+  L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLELCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R         P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEILRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HKK----ITTLESIFHLK------FSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  + + +   Q            + +   +   G+ +A ++ EF 
Sbjct: 499 LGIDHIGEVAAKKLSLSF-NKEWHKQ-----------SFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E    S I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDSVIFGKTFVITGTLSRP-RDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|299144358|ref|ZP_07037438.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518843|gb|EFI42582.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 664

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 201/709 (28%), Positives = 332/709 (46%), Gaps = 58/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +    +  L  +++  +  YY    PI+ D+EYD L      +      +      N P 
Sbjct: 2   EIIDRIRELIDKVNKLNYHYYTLDDPIVSDAEYDELYYELKKLEDENKIILA----NSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-----DDNSIFFTL 130
            ++GGE+     K TH  P  SL+K  + E+LR +  R  +  Q       +  ++ + +
Sbjct: 58  TRVGGEVLSKFEKHTHIAPLYSLDKAQSYEELRAWHERNLKALQSYRASGKNIENLKYVV 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K DG  I + YE G    A+ RG+G  GE++   I+ I +IP  L +    ++EV+GE
Sbjct: 118 ELKFDGLTINLTYEDGYLKMASTRGNGFIGEEILPQIKTIYSIP--LEIPYKGLMEVQGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI 249
             +  +     N            N RNAA+G LR L+P    +R L  F + +G   + 
Sbjct: 176 GLMPLSSLEKFNRTHDEQ----LKNARNAAAGALRNLDPKVTKSRNLTAFFYNVGYIKDD 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +   EM + +R  GF VN           ++    ++ SIR +L   IDG+  K+++ 
Sbjct: 232 RFRDDSEMKKFLRDNGFRVNENNYICKNLDEVIEKIEKIGSIRESLDILIDGVTIKINDM 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             +  LG   + PRW I++KF  K+ ST+LLD+   +GRT  +TP A L+PV IGG  I 
Sbjct: 292 ETRDLLGFTNKFPRWAIAYKFEAKEVSTKLLDVVWNVGRTSKVTPSAILQPVEIGGVTIK 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATL+N D I             + IR+  RVL++R+ +VIP+++  +      +     
Sbjct: 352 KATLNNYDDI-----------LKKKIRINGRVLLRRSNDVIPEILGALPT--EEETIEIE 398

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P +CP C + + +D             C   L+C  Q + RL HF SRDA NIEGL + 
Sbjct: 399 MPKYCPSCGTELFKD--------GVHIFCPNTLSCVPQLVSRLTHFASRDAMNIEGLSEM 450

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +            IR    I+ L+++          + GF +    NL  +I   +   
Sbjct: 451 TISKLLNE----LDIREIPQIYELEKQDLL------KLEGFKEKRANNLISAIADSKIRP 500

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L  FI+SLGI +VG + A  LA  +  +                 +  L+ +  +G I A
Sbjct: 501 LPNFIYSLGINNVGIKTAYDLANKFKDFDLLRHA----------KYDELVDIDDIGPITA 550

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           + IVEF+ +     +++ L +           +  +  ++K++V TGTL  I R + +  
Sbjct: 551 KEIVEFFNDKHIEKSIDRLFELGVSPKFEESTDEETYFKDKRIVITGTLS-IPRKELENM 609

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + GA +S+ +S+ TD +I G++ GSK +KA  LG++I++E +   LL
Sbjct: 610 LIKFGAKISSSVSKNTDFVIAGEDAGSKYDKAINLGIEIIDENKLRELL 658


>gi|293188969|ref|ZP_06607703.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309]
 gi|292822104|gb|EFF81029.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309]
          Length = 777

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 203/799 (25%), Positives = 349/799 (43%), Gaps = 99/799 (12%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           + P+   + E  R   + L   I+     YY    P + D++YD + R  + I   +P L
Sbjct: 1   MDPMADSTFETTRDRYNDLVDRINDARAAYYDRDSPTLADADYDRMYREVEQIEERYPQL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                 + P   +GG ++    +V H    +SL+ ++++E+L  + TR+       D   
Sbjct: 61  ---RSADSPTMSVGGSVDSGFSEVRHLAQMMSLDDVFSLEELAAWETRMAEATGISD--- 114

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           +  T E K+DG  I + YE G+ V AA RGDG+ GEDV+A  R I +IP+ L+  +P  I
Sbjct: 115 LEMTTEVKVDGLSINLLYENGRLVRAATRGDGYVGEDVTANARTIASIPQTLTGTVPARI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEVY    DF A N+  +  G K + N RNAASG LR+ +PT+   R L+   HG+G
Sbjct: 175 EVRGEVYFPVADFAAFNEARVEAGEKTFVNARNAASGSLRQKDPTETAKRPLSMVAHGIG 234

Query: 245 KTSE----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
                        Q    +++R  G PV+   R       I     E+   R  L ++ID
Sbjct: 235 FVEVGEDFTEPTTQMGWYEQLRDWGLPVSPYTRMLTGRKAIEERIAELGEKRHDLEHEID 294

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+++  LQ+ LG  +R+PRW  ++KF  ++  TRLLDI +Q+GRTG +TP   +E 
Sbjct: 295 GVVVKINDLDLQRSLGSTSRTPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMES 354

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ +  ATLHN   +             + + +GD V++++AG+VIP++V  + + 
Sbjct: 355 VLVAGSNVARATLHNAQEVAR-----------KGVLIGDLVVLRKAGDVIPEIVAPVEDA 403

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R+   +PF  P  CP C + +V++      +     RC     C AQ  ERL H  +R A
Sbjct: 404 RNGSERPFVMPKQCPSCGTTLVQEK-----EGDVDLRCPNKGLCPAQITERLAHVGARSA 458

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSI---RIPADIFTLQRRQQTSTT------------KIE 525
            ++EGLG +      + E+    +    +     TL+     +              + E
Sbjct: 459 LDVEGLGDESALAMTQPENDRDEVAAALVAGHSVTLEDGTVLTLEGGRELPHGEQITRAE 518

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR-SLAKYYLS-------- 576
            +L            ++   R   L   +    ++  G E       +Y+ +        
Sbjct: 519 ELLPAPQAPALRTEAALFDLRAEDLRDVMVWKPVKKKGEETGDWKQVRYFWTKAYKPRKL 578

Query: 577 ----------------YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA----------- 609
                            +    E+    +      L  + +  VG   A           
Sbjct: 579 RGQTVFEPIEPSASKGTEKMLAELEKAKSQPLARVLVALSIRHVGPTAARALAEKFLSMD 638

Query: 610 ---------------------QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
                                +++ +++    ++  ++A  +          +  S  + 
Sbjct: 639 ALRAASVEELSAVEGVGEEIGRSLRDWFTVDWHLEVLQAWARAGVRMADEAPEPTSDVLA 698

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
              +V +G +    R  A+E +T  G   +  +S+KT +++ G   GSK +KA++LGV +
Sbjct: 699 GLTIVVSGAMPGYDREGAKEAITSRGGKAAGSVSKKTSLVVAGPGAGSKEKKAKELGVPV 758

Query: 709 MNEEQFLFLLQQYNTTLRI 727
           + E+QF  LL+     + +
Sbjct: 759 ITEQQFADLLEGGLPAVGL 777


>gi|317181928|dbj|BAJ59712.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F57]
          Length = 656

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 232/711 (32%), Positives = 361/711 (50%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  +S   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQS---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITPNSFNKNPHLMRMWSLDDVFNQNELQTWLQRILKAYP-----SASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VS   + I  IP  ++ N    IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVSTNAKHIANIPHAIAYN--GEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F    
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFNSIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKIC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKHLKEFD 656


>gi|294786747|ref|ZP_06752001.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305]
 gi|315226368|ref|ZP_07868156.1| DNA ligase [Parascardovia denticolens DSM 10105]
 gi|294485580|gb|EFG33214.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305]
 gi|315120500|gb|EFT83632.1| DNA ligase [Parascardovia denticolens DSM 10105]
          Length = 868

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 217/814 (26%), Positives = 361/814 (44%), Gaps = 117/814 (14%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           +K   I + AL ++ A +  + +   +      YY    P+  DS YD        +   
Sbjct: 44  QKMGKIDLVALPVDLAARLWAKVASWVEDDQIAYYVNDSPVSSDSAYDQRMLTLQRLEAQ 103

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP L   ++P  P +++GG  +    +V H    LSL+ ++++E+L+ +   + R    K
Sbjct: 104 FPAL---DNPQSPTHRVGGTFSNDFTEVRHPSRMLSLDDVFSLEELKDWYQSLVRDLDWK 160

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---S 178
             + +  T E KIDG  + + Y  G       RGDG +GED++  +R I  IP  L    
Sbjct: 161 AGDPLPMTSEVKIDGLALNLVYRHGVLEQGLTRGDGVTGEDITMNVRTIAGIPSQLAGDP 220

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LN 237
            +IP+++E+RGEV++  +DF  LND+  A G+  +ANPRNAA+G LR+ +P    R  L+
Sbjct: 221 ADIPDLVEIRGEVFMRFDDFRKLNDQAQAEGKPTFANPRNAAAGSLRQKDPRITARRRLS 280

Query: 238 FFVHGLGKTSEIF--------AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
           F+ HGLG               + Q +     R    P +   R  N++  I+   +   
Sbjct: 281 FYAHGLGILEWGPQAAVRHPDIERQSQAYDLYRTWRIPTSPHNRLVNSYVEILDMISYYG 340

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  + + +DG+V KVD+ +LQ++LG  AR+PRW I++K+  ++ +T LLDI +Q+GRT
Sbjct: 341 DHRYDIEHPLDGIVVKVDQLALQRRLGATARAPRWAIAYKYPPEEVNTDLLDIRVQVGRT 400

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVA L PV + G+ +   TLHN   +K            + I +GD V+V++AG+V
Sbjct: 401 GRVTPVAHLRPVQVAGSTVARTTLHNPSEVK-----------HKGILIGDLVVVRKAGDV 449

Query: 410 IPKVVDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466
           IP++V  ++  R       + F  P  CP C + +         +     RC    +C A
Sbjct: 450 IPELVGPVLAARPEREGRLREFVMPDRCPSCGTEL-----APEKEGDKDWRCPNVESCPA 504

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED--------------------------- 499
           Q   R+ H  SR AF+IE LG+Q        E+                           
Sbjct: 505 QLANRVLHLASRQAFDIEHLGEQSALALTNPENNRPDSVDEYLPDIKEILIEEGEEPPVY 564

Query: 500 -PAFSIRIP----------ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
            PA  +R+P          AD+F L+     S      I    ++S     D+  K++ I
Sbjct: 565 LPAEGLRLPPEQKPVVQSEADLFALRPEDLRSVRTWREIP-LVEISERTDPDT-GKKKRI 622

Query: 549 SLERFIFSLGIRHVG----AEIARSLAKYYLSYQNF------------------------ 580
              R    L  +        +  +SLA+   S                            
Sbjct: 623 RKNRGGSGLWTQVPAFFNLPKKGQSLAETQPSKTTLAMFEEFDKARQADLWRVLVALSIR 682

Query: 581 ----------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
                     A+    + A +      L  +  +GD IA+++ ++++  ++  +    + 
Sbjct: 683 HVGAPTARLIAKHFKTLTAISQASEEELTSIDAIGDEIAKSVYQWFREAQDPSSWRGQIL 742

Query: 631 EVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
                 G              +  K +V TGTL+   R  A+E +   G   +  +S+KT
Sbjct: 743 AAWAQAGIGRKAAETVTDEQTLAGKTVVVTGTLEDFSRESAKEAIESRGGKAAGSVSKKT 802

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             ++VG N GSK  KA+ LG+ +++E+QF  LL+
Sbjct: 803 SYVVVGANAGSKASKAEALGIPMLDEDQFKTLLE 836


>gi|325846528|ref|ZP_08169443.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481286|gb|EGC84327.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 668

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 187/707 (26%), Positives = 338/707 (47%), Gaps = 58/707 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L  +I+  +  YY   +P++ D EYD L      + ++   +        P  ++G
Sbjct: 8   KIDELIDKINELNYHYYTLDEPMVSDGEYDKLYDELRELENSTGYINAF----SPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPK 133
           G +     K  H     S +K  NI+ L+ +I R  +   + ++        + F  E K
Sbjct: 64  GTILDKFEKHFHITRLYSQDKSQNIDQLKDWIIRTKKLRDQYNNSHDDKLEKLEFLTEYK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + YE G    A+ RG+G  GEDV+  +  IPTIP  +      ++E++GE  +
Sbjct: 124 FDGLTINLTYENGLLKTASTRGNGIVGEDVTKQVLTIPTIPTKIKEK--SLLEIQGEAVM 181

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
             +     N+E       P  N RNAA+G +R L+ +    R L  + + +   S +  K
Sbjct: 182 PLSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTRKRNLKAYFYQISTNS-LDFK 236

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            + + L  +     PV    +    F  IV   + +K  R  +    DG+V KV++   Q
Sbjct: 237 TEEDKLNFLEEQKLPVYPYKKLIKNFDEIVKEIDYIKEERHHIDVLTDGVVIKVNDVKTQ 296

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + PRW I++K+  ++ +T+LLD+   +GRTG +TP A LEPV+  G  +  AT
Sbjct: 297 EVLGYTNKFPRWSIAYKYDPEEYTTKLLDVVWNVGRTGKVTPSAILEPVDFSGVTVQRAT 356

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N D I             + +++G +V ++R+ +VIP+++ ++ +E   +      P+
Sbjct: 357 LNNYDDI-----------LRKKVKIGSQVFIRRSNDVIPEILGVV-DENQENTVEIKKPT 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S ++        +      C   ++C+ Q   R+ HF SRDA +IEGL ++ ++
Sbjct: 405 KCPYCHSELI--------EGNVHIYCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTVE 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         I+   D++ L+               F +    NL  +I   +   L  
Sbjct: 457 LFINE----LDIKEIYDLYDLKYEDLIDLE------SFKEKKTNNLLQAIENSKECDLNH 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI+++GI +VG + AR LA+ Y S +N      + +          + V  +G+  +  I
Sbjct: 507 FIYAIGIPNVGVKTARDLAEKYKSLENLRNAKEDDL----------VEVEDIGEKTSHDI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           VEF+ +     +++ LL++        E  VS+ +E  K+V TG+++  +R+  ++ +  
Sbjct: 557 VEFFNDKNIKESIDKLLEKGIKIKEIEESEVSNFLEGMKIVITGSIENYKRNDIKKLILD 616

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               V++ +S+ TD+++ G+ PGSK EKA QLG+K++  E+    ++
Sbjct: 617 HNGDVTSSVSKNTDLVLCGEKPGSKKEKADQLGIKVLENEELFEFIK 663


>gi|85702769|ref|ZP_01033873.1| DNA ligase, NAD-dependent [Roseovarius sp. 217]
 gi|85671697|gb|EAQ26554.1| DNA ligase, NAD-dependent [Roseovarius sp. 217]
          Length = 866

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 280/694 (40%), Positives = 399/694 (57%), Gaps = 39/694 (5%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+ ++AR EL+ L   ++  +  Y+    P I D+ YDALK R  AI    P L 
Sbjct: 5   IAVEDLTEDEARTELARLAALLAEANRAYHTEDAPEITDAAYDALKARNAAIEARLPALK 64

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   +   +++G   +    KVTH I  LSL   +   D+ +F TRI R+    DD  +
Sbjct: 65  RA---DSASDQVGAAPSDGFAKVTHRIRMLSLGNAFEAGDVAEFDTRIRRYLGLADDAPL 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE+G+ V AA RGDG  GE+V+A    I  IP  L+   PE++E
Sbjct: 122 AYTAEPKIDGLSLSLRYEQGRLVQAATRGDGEVGENVTANAHTIADIPETLT-GAPEVLE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN    A   K +ANPRNAA+G LR+L+ T    R L FF +  G+
Sbjct: 181 VRGEVYMSHADFAALNARQAAKSDKSFANPRNAAAGSLRQLDATITAARPLRFFAYSWGE 240

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A  Q   + ++  LGF  N      +    +++ Y  ++  R+TL YDIDG+VYK
Sbjct: 241 LSAPLADTQMGAIDRLAALGFQTNPLTVLCDGTEALLAQYARIEQARATLGYDIDGVVYK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+  LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 301 VDDLGLQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG 360

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGG-----RDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
            +++NATLHNEDYI G D+ G V+R       +DIRVGD V V RAG+VIPK+ D+ + +
Sbjct: 361 VVVSNATLHNEDYIAGRDSKGAVIRPDENGNAKDIRVGDWVQVYRAGDVIPKIADVDLTK 420

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  +A PF FP+ CP C S  VR+      +  A  RC GGL C AQ +E+LKHFVSR A
Sbjct: 421 RPENAAPFIFPTTCPECGSDAVRE------EGDAVRRCMGGLICPAQAVEKLKHFVSRAA 474

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +Q++ F+  +     I+ PADIFTL+ R   + TK+ N  G+G+ SV  L++
Sbjct: 475 FDIEGLGAKQIEMFYNDDQ--LPIKQPADIFTLKERDGKNLTKLANREGWGEKSVAKLFE 532

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI----IAHNNDDW- 595
           +I  RR++ L RFIF+LGI +VGAE+++ LA ++ S+    Q  +++    I    + W 
Sbjct: 533 AIEARRSVELPRFIFALGIPNVGAEVSKDLANFHGSWTALVQANDDVKNQRIQTAIEHWS 592

Query: 596 -------LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVSSE 646
                   + + V  V + + +  + F+        V  +     +   +G+    VS E
Sbjct: 593 RINISNDTNWLEVVEVANELREFELSFWDRLYAYKGVAGVGLLANLRKFLGKSLTKVSDE 652

Query: 647 IENKKLVFTGTLQKIQR-----HKAQEYVTQLGA 675
              K  VF  T +  +R       A+E    LGA
Sbjct: 653 QATK--VFDATFKNTKRYSTKYEAAKEQFGSLGA 684



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 79/147 (53%)

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             Y  +   ++ +   I  +      L+ +   G +   +I+ F+ N  N+ AV ++LK 
Sbjct: 717 DNYGGWSASSKNLEEFIEKDAQICAQLLPLVGHGQVTVDSIIRFFGNNNNVAAVNSILKY 776

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           V P     +    S I  K +VFTGTL+K+ R +A+     LGA V+  +S KTD++I G
Sbjct: 777 VDPKEFEKQAITDSSIYGKTVVFTGTLEKMTRAEAKARAEGLGAKVAGSVSAKTDLLIAG 836

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              GSK +KA +LG++ ++E+ +L L+
Sbjct: 837 PGAGSKAKKAAELGIETIDEDGWLALI 863


>gi|332673586|gb|AEE70403.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 83]
          Length = 656

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 232/711 (32%), Positives = 361/711 (50%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K +H +   SL+ ++N  +L+ ++ RI + +      +  F   PK+D
Sbjct: 60  QKVGAITPNSFNKNSHLMRMWSLDDVFNQNELQAWLQRILKAYP-----NASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP  ++ N  E IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYN--EEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRN ASG LR+L       R L F   G+GK S  F    
Sbjct: 173 KDFDALNKERLNANEPLFANPRNTASGSLRQLGSKITKKRKLQFIPWGVGKHSLNFL-SF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSSIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+        K      F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L          N++  +  ++L +      G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   NK +V TGTL K ++  AQ  + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTKEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L+ ++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKGFD 656


>gi|78777542|ref|YP_393857.1| NAD-dependent DNA ligase LigA [Sulfurimonas denitrificans DSM 1251]
 gi|123768611|sp|Q30QV9|DNLJ_SULDN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78498082|gb|ABB44622.1| DNA ligase (NAD+) [Sulfurimonas denitrificans DSM 1251]
          Length = 652

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 201/705 (28%), Positives = 357/705 (50%), Gaps = 58/705 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +++     + ++ +   YY     I  D  YD L         +  +       N P  +
Sbjct: 3   KEQYIKAVELLNLYSYHYYVLDDAITTDEVYDKLYHEVLEYEESHKEDILK---NSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  ++    K  H     SLE +++ + L+K++ + Y+      D++I F  EPK DG 
Sbjct: 60  VGDTVSEGFSKAPHLSRMWSLEDVFDSDGLQKWLIKTYKL-----DSNISFYCEPKYDGA 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G+   A  RGDG  GE ++  ++ I ++P  LS+   E IE+RGEV I K++
Sbjct: 115 SLNLIYENGELSQAITRGDGEVGELITQNVKTIRSVP--LSIEHKEKIEIRGEVVIFKDE 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N   +  G   +ANPRNAA+G LR+L+ +   +R L F  +G+G+   +  K   +
Sbjct: 173 FEKINQTRLKDGEALFANPRNAAAGSLRQLDSSITASRNLVFLPYGVGENF-LEHKLLSQ 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  LGF           F+ I + Y EM   R + P  +DG+V KVDE + Q  +G
Sbjct: 232 KMEYIYSLGFKKPPFCATCKDFNEIEAVYQEMSRNRDSYPMMLDGMVVKVDEIAAQIDMG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PR+ +++KF   +  T + +I +Q+GRTG +TPVA +EP NI G ++  ATLHN 
Sbjct: 292 YTVKNPRFSVAYKFPAVEKITTIKEIILQVGRTGAVTPVAIVEPTNIDGVVVERATLHNF 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+ D V++ R+G+VIPK++ ++ +ER      +  P+ CP+
Sbjct: 352 DEIQR-----------KDIRINDHVIILRSGDVIPKIIKVLTHERDGSEVEYKRPTICPV 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S ++              +C   L C A+ +  + +F S+   NI+GLG + ++  F 
Sbjct: 401 CESELL--------DEGVLLKCQN-LTCEARVINSIIYFASKPCLNIDGLGVKIVEALFN 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           S      ++   D+F L   +      +  + GF +    NL D++   +     RF+ S
Sbjct: 452 S----GLVKSVVDLFDLTLEK------LLTLEGFKEKKAQNLLDALGSAKGCEYWRFVNS 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   +++L+  + S           I    D+ ++      VG+ +A++++EF 
Sbjct: 502 LGIEHIGEVASKTLSAKFGS---------GFIDATKDEIVAC---DGVGEEMAESLLEFI 549

Query: 617 QNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +   N   +  L   + P    + ++   +  + K +V TG++ +  R   +E +  LGA
Sbjct: 550 RV--NRETILKLQNILKPLEPLQRQEAKENPFKGKSVVLTGSMSE-SRDMIKEMLESLGA 606

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V + +S+KTD +I G++ GSK +KA  LGV+ +NE++    ++Q
Sbjct: 607 KVVSSVSKKTDFVIYGEDAGSKYDKAMDLGVECLNEDEMRSKIEQ 651


>gi|302392792|ref|YP_003828612.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501]
 gi|302204869|gb|ADL13547.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501]
          Length = 671

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 205/699 (29%), Positives = 341/699 (48%), Gaps = 58/699 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   +E+  L  +++ ++  YY    P++ D EYD L  R   +      +        P
Sbjct: 5   ETLEQEMKKLINKLNKYNYHYYVLDDPLVSDKEYDQLYDRLVELEEETGKVLSG----SP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-------QKKDDNSIF 127
             ++G E         H  P  SL+K     +LR +  RI R          +       
Sbjct: 61  TQRVGAEPLDEFDSHQHLAPLWSLDKAQTGGELRDWDERIRRLIADYNREHPENPLPEPL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +T+E K DG  I + YE+G+ V AA RG G  GE +   ++ I TIP  +       +EV
Sbjct: 121 YTVEYKFDGLTINLTYEEGELVQAATRGTGEVGEAILEQVKTIKTIPLQIPFK-SGKLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           +GE  +  +     N +       P  N RNAA+G LR L+P     R L+ F + +G  
Sbjct: 180 QGEGIMRLSVLEEYNQQA----ETPLKNARNAAAGALRNLDPKVTAERNLDAFFYSIGYY 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             I      E+L  +R   F VN+ ++  +    ++     ++     L Y +DG+V KV
Sbjct: 236 EGIEFDTHLEILDFLRENRFMVNDYLKTFDEIEDVIEEMETIEEKVDDLDYLVDGMVIKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++   Q+ LG  AR+PRW I++KFA K+ +T LLD+  Q+GRTG LTPVA LEPV+I GA
Sbjct: 296 NDLRTQEVLGYTARAPRWAIAYKFAAKEVTTTLLDVKWQVGRTGKLTPVALLEPVDIEGA 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATL+N D I+            +D+  G RV ++R+ +VIP+++  +  E   + +
Sbjct: 356 TVSKATLNNWDDIQR-----------KDVAKGCRVWLRRSNDVIPEIIGRVETEEIEEVE 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
             + P  CP C S +V+D             C   L C  Q + R+ HF SRDA  IE  
Sbjct: 405 EIAKPEECPDCGSSLVQD--------GVHLFCPNSLFCKPQLVARVAHFASRDALEIETF 456

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++  +  ++       +R  AD++ ++  +      +  + GFG+    NL D++ + +
Sbjct: 457 SEKTAEKLYEE----LGLRDIADLYDIEYEE------LLELEGFGEQKAENLIDALEESK 506

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           ++ L  FI+ LG+ +VG   A  LA  + S +   +           D   L+ +  +G+
Sbjct: 507 DVELSSFIYGLGVPNVGTRTAELLADKFKSLERLMEA----------DKEELVEINGIGE 556

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           ++A+ IV+F+ +     +++ +L+           E    S   ++ +V TG+L  + R 
Sbjct: 557 VVAEEIVDFFADENIQGSIQRMLEAGVEPNYEAIEEVQEDSPFVDQTIVMTGSLPGLTRS 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +A+E +  LG  V++ +S  TDI+IVG+NPGSKL+KA+Q
Sbjct: 617 EAKEKIKALGGKVTSSVSGNTDILIVGENPGSKLDKARQ 655


>gi|315187042|gb|EFU20799.1| DNA ligase, NAD-dependent [Spirochaeta thermophila DSM 6578]
          Length = 697

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 222/719 (30%), Positives = 352/719 (48%), Gaps = 57/719 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++A++E+  L + +   D  YY   +P + D EYD+L  R   +   FP L R   P
Sbjct: 1   MTEQEAKREIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFERLKTLETRFPHLRR---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P+ ++G ++ +   +V H+IP LSL+K +   ++  +I +  R   K     + F +E
Sbjct: 58  DSPIQRVGSDLTVDFPEVAHTIPVLSLDKAYTETEVLSWIEKTERAAGK----PLGFVIE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + Y  G    A  RG+G  G D++   R I  IP  +  N    + VRGEV
Sbjct: 114 EKIDGVSLVLYYRGGILDRAVTRGNGRVGNDITPNARTIRQIPLRIPEN--GEVVVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+    F  +N  M      PYANPRN A G+LRR N  ++ R    F+   G       
Sbjct: 172 YLPLQYFDEINARM----EVPYANPRNLAGGVLRRKNSAEVARVPLHFLAYDGYLP-FPV 226

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQ-----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               E L  +   GFPVN    +      +    I ++    +S R+TL Y IDGLV+KV
Sbjct: 227 ATYTESLDYLIDWGFPVNPRHERLPAGTPDREARIRTFIERERSGRATLDYQIDGLVFKV 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +E  ++++LG     PRW I++KF   QA T LL ID+Q+GRTG +TPVARL+PV + G+
Sbjct: 287 NELDVRERLGYTGHHPRWAIAYKFEAPQAVTELLRIDVQVGRTGRVTPVARLKPVELSGS 346

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+N TLHNEDY++ L+           +  GD V + + G+VIP +  ++  +      
Sbjct: 347 TISNVTLHNEDYVQALE-----------LAPGDLVAISKRGDVIPAIEKVV-EKNEEGVP 394

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            +  P  CP C S + R          A H C     C A    RLK FVS    +I  L
Sbjct: 395 VWRMPEHCPECGSPLERR--------GAHHFCPN-RNCPAVITGRLKFFVSPKQMDIRVL 445

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +DF  +       IR   D++T    +        +  GFG+  ++ +   I + +
Sbjct: 446 GNETIDFLVEK----GYIRRIPDLYTFDYWKLL------DEPGFGEKKISQIVQGIEESK 495

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                  + +LGI  VG  +  +L +  ++  +    I      +  D  +L R+  +G+
Sbjct: 496 KRPFSTVLVALGIPEVGPSVVETLIRGGITSIDRLFTI-----ADRGDVEALTRLEGIGE 550

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQ-RH 664
             A+ ++E  ++P     +E L K            VS    E +    TG+ +    R 
Sbjct: 551 KTARQLMETLRDPEWRKEIEELRKAGLSFEEERPTVVSGGPFEGQAWCVTGSFRHFTPRS 610

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           KA+E +  LG  V + +S KT  ++VG+NPGSKLEKA+ LGV++++E+QF+ +L+    
Sbjct: 611 KAEELIASLGGKVVSSVSSKTTHLLVGENPGSKLEKARSLGVRLVSEDQFIEMLKAAGV 669


>gi|255321406|ref|ZP_05362566.1| DNA ligase, NAD-dependent [Campylobacter showae RM3277]
 gi|255301559|gb|EET80816.1| DNA ligase, NAD-dependent [Campylobacter showae RM3277]
          Length = 647

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 218/703 (31%), Positives = 344/703 (48%), Gaps = 60/703 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +KE       ++     YY    PI  D EYD L  +      A            P  +
Sbjct: 3   KKEYLEAVDTLNAWAKAYYTDDAPIATDEEYDELYHKVLEFERAN---LGEISMFSPTKR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE++    K  H     S+E I++ ++L  ++ R        D   + F L+PK DG 
Sbjct: 60  VGGEVSEGFVKARHGARMWSMEDIFSFDELLAWLKR-------GDKEGLEFALQPKFDGA 112

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G  V A  RGDG +GEDV++  + I  IP  L +     IE+RGEV I+KND
Sbjct: 113 SLNLLYENGALVRAITRGDGITGEDVTSNAKVIKNIP--LQIAYSGRIEIRGEVVIAKND 170

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N      G    +NPRNAA+G LR+L+     +R L F   G G+   +  +   +
Sbjct: 171 FDEINFARAQRGESQLSNPRNAAAGSLRQLDSAVTASRRLRFKPWGYGE-QNLGLETYSQ 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           M+  +   GF      +   +   I   Y ++ + R + P+ +DGLV +V   +  ++LG
Sbjct: 230 MMDFIYSQGFEREEFFKICRSAEQIEEAYKQLVAQRDSKPFMMDGLVVRVQSIAASEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M+++KF   + +TRLLD+  Q+GR+G++TPV  LEPVNI GA++ +ATLHN 
Sbjct: 290 YTEKFPKFMVAYKFPAIEKTTRLLDVAFQVGRSGVVTPVGVLEPVNIDGAIVKSATLHNF 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            ++ GD + + R+G+VIPK+  +    R     P   P  CP+
Sbjct: 350 DEIERL-----------GVQKGDFISIIRSGDVIPKITGVFKQRRDGSQTPIERPHECPV 398

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++              +C   L C A+ +  L HF S+   NI+GLG   ++  F+
Sbjct: 399 CGSMLL--------DEGVFVKCQN-LECKARVINSLIHFASKKCLNIDGLGDAIVNQLFE 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L  +            GF D  + NL  +I   R  +L  FI S
Sbjct: 450 ----AGLVAKIADIYELTAQDLARLE------GFKDKKIANLLGAIEASRTPALHSFIAS 499

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ +A+ Y   QN+ +     +A           +   G+ +A++  EF 
Sbjct: 500 LGIEHIGEVAAKKIAQIYP--QNWRELSFGEVAA----------IEGFGEAMAESYAEFM 547

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q   N   ++ +L+ VSP   +  +   S I  K  V TGTL K  R + +  +   GA 
Sbjct: 548 QV--NRQNLDEILRFVSPQ-AQSFETKQSAISGKTFVITGTLSKG-RDEFKRVLEVNGAK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KTD ++ GD  GSKL+KA++LGVK + E++   +++
Sbjct: 604 VSGSVSKKTDFVLYGDEAGSKLDKARELGVKAITEDELRQMIE 646


>gi|238917130|ref|YP_002930647.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750]
 gi|238872490|gb|ACR72200.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750]
          Length = 669

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 203/714 (28%), Positives = 348/714 (48%), Gaps = 62/714 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E S L++ I YH D YY   +P I D EYD L  R   I    P+   S   + P  KI
Sbjct: 5   QEYSELKKTIDYHMDRYYNQDEPEISDYEYDKLMIRLKEIEKEHPEWVTS---DSPSQKI 61

Query: 79  GGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG +   +  KVTH++P LS+E +++ + +  ++ +++            F++E KIDG 
Sbjct: 62  GGTVKREAGVKVTHNVPMLSIEDVFSEDAVCAWVDKVHAM-----HPDCTFSVETKIDGL 116

Query: 138 MITIRYEKG-----KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
            +++RY K          A  RGDG  GEDV+A  R +  + +V+ L   + +E+RGEVY
Sbjct: 117 SMSLRYVKEADGKLHLHLAETRGDGLIGEDVTANARVVGDVLQVIDLPY-DSLELRGEVY 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +S  DF   N+E   + +K  ANPRN A+G LR+L+ +    R L  F+  +    +   
Sbjct: 176 MSHEDFEKYNEEQERLEKKTAANPRNLAAGTLRQLDTSITKKRGLKIFIFNVQDGPDEIM 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +     +  ++  G PV    +   T   +V   +E+  +R  LPYDIDG V K+D  + 
Sbjct: 236 ESHGRGMDILKAAGVPVV-YHKICKTKEEVVRAIDEIGRMREELPYDIDGAVVKIDHIAF 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL------EPVNIGG 365
           +++    ++     I++K+  ++    + DI + +GRTG LT           +P  + G
Sbjct: 295 RQEFPAGSKYSSGHIAYKYPPEEKVIVMDDILVDVGRTGKLTFTGIFHDPETGKPARLCG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ ATLHN+DYI  ++           + +G    + ++GE+IPK+   +        
Sbjct: 355 TSVSRATLHNQDYITQMN-----------VGIGGEYKLFKSGEIIPKLNGCVKAP----E 399

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F  P  CP+C   ++R+ +       A  RC    +C+AQ    + +F S D  NI G
Sbjct: 400 HVFEAPKVCPVCGEPLIREED------TADIRCVNP-SCAAQLSRTVAYFTSLDCMNIMG 452

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG+  +D   K       I   ADI+ L+  +     K   I+G  + +   L  +I K 
Sbjct: 453 LGETLVDALIKD----GYIHNYADIYALKEHRDELIEK--GIIG-KEKNTDKLLAAIEKS 505

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  + +R + +LGIR+VG   A+ +  YY          +N++   +     L  +P +G
Sbjct: 506 KENTPDRLLTALGIRNVGKNTAKQIMNYY----------DNLMELADAGEEELQNIPDIG 555

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
              A+ I +F+ +  NI  +E L +         +K +S ++E K +V TG+     R  
Sbjct: 556 ATTAKCIHDFFHDEANIELLERLKQSGLNMQMPEKKEMSDKLEGKTIVVTGSFDNYSRKD 615

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +E +   G   +  +S+KTD ++ G+  GSKL+KA  LGVK++  ++F+ +++
Sbjct: 616 MEELIVSNGGKATGSVSKKTDYLVAGEAAGSKLDKANSLGVKVLTIDEFMEMIK 669


>gi|254779395|ref|YP_003057500.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B38]
 gi|254001306|emb|CAX29287.1| DNA ligase (NAD(+)) [Helicobacter pylori B38]
          Length = 656

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 223/714 (31%), Positives = 357/714 (50%), Gaps = 65/714 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++  + ++ L   +S+H   YY   + I+ D+ YD L +   A     P+  ++   N
Sbjct: 4   SQKEYLERIAYL-NTLSHH---YYNLDESIVSDAVYDELYQELKAYEEENPNDIQA---N 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   P
Sbjct: 57  SPTQKVGAITTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKVYP-----SASFVCSP 111

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y  GK + A  RG+G  GE V+   + I  IP  ++ N    IE+RGEV 
Sbjct: 112 KLDGVSLNLLYHHGKLISATTRGNGLEGELVTNNAKHIANIPHFIAYN--GEIEIRGEVI 169

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ISK DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F 
Sbjct: 170 ISKKDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E  +
Sbjct: 230 -SFKECLDFIVSLGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVNELGI 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK+LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA++  A
Sbjct: 289 QKELGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVNRA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   I+            ++I + DRV+V R+G+VIPK++  +   R         P
Sbjct: 349 TLHNYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + +
Sbjct: 398 KVCPICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVI 448

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+ +     I    D++ L+        K      F      NL D+I K +N  L 
Sbjct: 449 EQLFEEK----LIFNALDLYALKLEDLMRLDK------FKIKKAQNLLDAILKSKNPPLW 498

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I +LGI H+G   +++LA+Y L          N++  +  ++L +      G  +A +
Sbjct: 499 RLINALGIEHIGKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMAHS 545

Query: 612 IVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +V FY +  N   + +L   ++P    +   ++  SS   +K +V TGTL K ++  AQ 
Sbjct: 546 LVNFYAS--NQEFIRSLFDLLNPKNSDMAEEKQKSSSVFSDKTIVLTGTLSKPRQEYAQ- 602

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +  LGA +++ +S KT+ +I G+NPGSKL  A++ GV ++NEE+ L  L++ +
Sbjct: 603 MLENLGAKIASSVSTKTNFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKKLD 656


>gi|330813743|ref|YP_004357982.1| DNA ligase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486838|gb|AEA81243.1| DNA ligase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 672

 Score =  620 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 244/713 (34%), Positives = 400/713 (56%), Gaps = 49/713 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SI+  +K+L    + ++ +D  YY+   P I D EYD +K++                  
Sbjct: 4   SIDDYKKKL----KLLNQYDHNYYETDSPKITDGEYDEIKKKLLEFEKKNSQYKFV---- 55

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
              NK+G   +    KV H+   LSL   ++IED+  F  +I  +   +    I    EP
Sbjct: 56  --SNKVGFAPSKKFSKVKHTEKMLSLGNAFSIEDMNGFYKKIKNYLNYEAGQDIILVAEP 113

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191
           KIDG   ++ Y+ G  V    RGDG  GE+++  +  IP IP+ +   N P+++E+RGEV
Sbjct: 114 KIDGISASLLYQNGILVQGLSRGDGEYGEEITENLMTIPDIPKKIIYKNFPKLMEIRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF 250
           YI K DF  +           +ANPRNAA G LR+ +        L FF +   +++   
Sbjct: 174 YIGKKDFKNI--------ENNFANPRNAAGGSLRQKDFKKTAAIPLKFFAYSTIQSNYSH 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + QYE L+ ++   F  N   R       +   YN+++ +RS L YDIDG+VYK+++ +
Sbjct: 226 FQSQYEFLEFLKYSNFKTNPLSRIIKNIKELEKNYNDLEQLRSGLDYDIDGIVYKINDLN 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQK+LG  + SPRW I+HKF+ ++A T++ DI+IQ+GRTG LTPVA+++P+N+GG +++N
Sbjct: 286 LQKRLGNLSNSPRWAIAHKFSAEKAFTKINDIEIQVGRTGALTPVAKVDPINVGGVMVSN 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED I             +DIR+GD V ++RAG+VIP+VV + +++R    + ++F
Sbjct: 346 ATLHNEDEI-----------IRKDIRIGDTVCIQRAGDVIPQVVYVDLSKRGRKTEAYNF 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           P+ CP C +  +++ N  + K+ A  RC   G  CS    E+LKH +S+DA NI+G GK+
Sbjct: 395 PAKCP-CGNDTIKEYNEISKKIDAVRRCPDVGYECSYMAKEKLKHLISKDALNIDGFGKK 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F+  +     I++P+DIF L  +       I+ + G+G++S  NL  SI K + +S
Sbjct: 454 VVDNFWNLK----LIKVPSDIFKLDYKA------IKELEGWGELSCNNLIKSIEKSKTLS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L +FI+++GIRH+G E A+ LA Y+ S   F +      +    +  +LI +  +G+   
Sbjct: 504 LTKFIYAIGIRHIGQENAKILASYFKSITKFKKLF--APSLIKAELNNLIEIDGIGETQI 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +A+  F+ N +NI  +  L++ +   I   E   S    NK L+FTG   K+ R +A+  
Sbjct: 562 KALEIFFSNKKNIKVINDLVECL--QISNFENITSGIFTNKTLMFTGGFSKMSRSEAKTL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               G  V   +S+K + ++VGD+    +K++KA+ L V+I++E+++  LL++
Sbjct: 620 AESQGGKVLGSISKKLNYLVVGDSKPTNNKVQKAKDLQVEIISEKKWHELLKR 672


>gi|282882908|ref|ZP_06291513.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B]
 gi|281297319|gb|EFA89810.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B]
          Length = 664

 Score =  620 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 197/715 (27%), Positives = 345/715 (48%), Gaps = 59/715 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QA +++  L +E++ +   YY   K +I D  YD +      +     +       + P 
Sbjct: 2   QASEKMQKLVKELNRYGYYYYTLDKSLIDDKVYDRMYDELVNLEKE--ENIVLA--DSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
            ++GG++  S  K  H  P  S+ K  + ++LR +I +   F +  +++       +   
Sbjct: 58  TRVGGQILKSFQKHKHLNPLYSMNKAQSFDELRDWIEKNKNFIENYNESHEDKLSEMELI 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           LE K DG  I + YE G    A  RG+G  GE +++ ++ I +IP  LS++   ++E++G
Sbjct: 118 LELKFDGLTINLTYEDGYLKMATTRGNGLIGEVITSQVKTINSIP--LSIDYKGLVEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           E  +        N +          N RNAA+G LR L+P +   R L  + + +     
Sbjct: 176 EGLMPLKSLEEYNKKASEK----LKNARNAAAGALRNLDPKETKARNLTAYFYNVNYIEG 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   EM + ++  GF V+    +  +F  +    N +  IR  LP  IDG+  K+++
Sbjct: 232 KNFKDDVEMKEFLKSQGFLVSKYNYKVKSFKDVQEKINYIADIRKDLPIQIDGVTIKIND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  ++ L    + PRW I++KF  + A ++LL++   +GR+  +TP A +EPV I G  I
Sbjct: 292 FKTREILSFTQKFPRWSIAYKFEAEIAESKLLEVVWNVGRSSKVTPSAIIEPVEIDGVTI 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I             + +R+   +L++R+ +VIP+++ ++ +         
Sbjct: 352 KRATLNNFDDINR-----------KKLRLNSNILIRRSNDVIPEILGVLPS--DEKTFAI 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C + + +D             C   L+C  Q + RL HF SRDA NI G  +
Sbjct: 399 KRPKVCPACGAHLFQD--------GVHIFCPNTLSCRPQLVSRLVHFASRDAMNINGFSE 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++ F         ++   DI+ L+         I  + GF +    NL ++I   +N 
Sbjct: 451 KTIEKFMDE----LGLKEIPDIYNLK------YDDIIKLEGFKEKKTKNLLEAIENSKNP 500

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FI+++GI +VG + AR LAK+Y ++          +A +   +  LI V  +G I 
Sbjct: 501 FLSNFIYAIGIANVGIKTARDLAKHYKNF----------MAFSKASFDDLIEVGDIGPIT 550

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ I+ F+ +      ++ L       +     N   + E K +V TG+L + +R + +E
Sbjct: 551 AKEIINFFADDHIKDGLQKLFSYGIKVVYEENLNKDLKFEGKTVVITGSLSR-KRKELEE 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +   GA VS+ +S+ TD +IVG+NPGSK +KA++L V+I+NEE+   +L   + 
Sbjct: 610 ELINNGAKVSSSVSKNTDFLIVGENPGSKYDKARELSVEILNEEELNKILGGGHD 664


>gi|311744048|ref|ZP_07717854.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272]
 gi|311313178|gb|EFQ83089.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272]
          Length = 782

 Score =  620 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 222/816 (27%), Positives = 367/816 (44%), Gaps = 128/816 (15%)

Query: 1   MKKRQLI-PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           M   +   P+  L  ++AR E+++L + I+   + YY     ++ D+ YD   R+ +A+ 
Sbjct: 1   MATDESPGPVPDL--DEARAEVTTLLERIAEAREAYYGQDASLVDDATYDGWLRQLEAVE 58

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
              P+L      + P   +G      L  V H+   LSL+ ++  ++LR + T+      
Sbjct: 59  RRHPELQGQ---DSPTLNVGAATTTDLAPVVHAERMLSLDNVFGADELRAWCTKTTEAAG 115

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-S 178
           +     + +  E KIDG  +++RYE G+ V AA RGDG  GEDV++    +  +PR L  
Sbjct: 116 R----PVRWLTEAKIDGLAVSLRYEHGRLVSAATRGDGRVGEDVTSNAARLAGVPRELDG 171

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGR------------------------KPYA 214
              P ++EVRGEV+I+   F  LN     +                            +A
Sbjct: 172 EGHPALVEVRGEVFIAVEAFRRLNALQADLRERVVADATARGQETGRAEASAARRFPAFA 231

Query: 215 NPRNAASGILRRLNPTD--------ITR--YLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
           NPRNAA+G LR+L            + R   L+ +VHG+G   +     Q E+   +   
Sbjct: 232 NPRNAAAGGLRQLLSKKDGLELEAGLARIESLSLYVHGIGAWDDPPVAAQSEVYDLLASW 291

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G PV+   R  +    +V    E+ + R+ + ++IDG+V KVDE +L  +LGE +R+PRW
Sbjct: 292 GLPVSPHGRVLDGVDEVVDRIAELGTGRAAIEHEIDGVVVKVDELALHPELGETSRAPRW 351

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I++K+  ++  TRLLDI + +GRTG  TP A +EPV++ G+++  ATLHN+D ++    
Sbjct: 352 AIAYKYPPEEVHTRLLDIVVSVGRTGRATPFAMMEPVHVAGSVVRQATLHNQDVVR---- 407

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   + + +GD V++++AG+VIP+V+  +   R      F  P+ CP C + +   
Sbjct: 408 -------EKGVLIGDTVVLRKAGDVIPEVLGPVAELRDGSEVEFVMPTRCPECDTAL--- 457

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF-S 503
                 +     RC     C AQ   R++H  SR A +IE LG+       + E PA   
Sbjct: 458 --RPMKEGDIDLRCPNARTCPAQVRGRVEHVGSRGALDIEALGEVTAAALTQPEVPAEPP 515

Query: 504 IRIPADIFTLQ-----------RRQQTSTTKIENI------------------LGFGDVS 534
           +R  A +F L            R  +T   +I+                     GF D S
Sbjct: 516 LRTEAALFELDLATLVPIEVVVRDAETGQPRIDPTTGEPVRRRPFQRVETTYPPGFEDAS 575

Query: 535 VTNL---------------------YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                                     + ++K R   L RF+ +L IRHVG   AR+LA++
Sbjct: 576 AAERRAAGVRKDHRTILPSAQALTLLEELDKARTKELWRFLVALSIRHVGPVAARALAQH 635

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---- 629
           + S +       + +A           V  VG  IA ++ ++     ++  +        
Sbjct: 636 FGSVRAIEAAGEDELAV----------VDGVGPTIAGSVKDWLTVDWHVEILRRWEAAGV 685

Query: 630 --KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
                              +    +V TG+L+   R   +E +   G   +  +S+KTD 
Sbjct: 686 RLHIPDHPGPGAADAEPGPLSGLTIVVTGSLEGFTRDSVKEAILVRGGKAAGSVSKKTDY 745

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++VG+N GSK EKA+QLG+ I++E  F+ LL +   
Sbjct: 746 VVVGENAGSKAEKAEQLGIPILDEAGFVELLDRGPA 781


>gi|13508096|ref|NP_110045.1| DNA ligase [Mycoplasma pneumoniae M129]
 gi|2494169|sp|P78021|DNLJ_MYCPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|1674170|gb|AAB96127.1| DNA ligase [Mycoplasma pneumoniae M129]
          Length = 658

 Score =  620 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 201/699 (28%), Positives = 346/699 (49%), Gaps = 55/699 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            ++ ++ +++  +D  YY    P++ D EYD L ++  A+  A P+L +   P+ P  ++
Sbjct: 5   AQIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQ---PDSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +  +  K  H  P LSL+  ++   +  FI  I      ++     F +EPKIDG  
Sbjct: 62  GGIVVEAFNKFPHQNPMLSLDNAFDTATIASFIANINNLTGVQN----RFVVEPKIDGVS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G    A  RGDG  GEDV + ++ I +IP  L++   + +E+RGE+++ K  F
Sbjct: 118 ISLTYENGLLTRALTRGDGLVGEDVLSNVKTIKSIP--LTIPFHKQVEIRGEIFVDKKTF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N+ +     KP+AN RN A+G LR LN      R L  F + +     +  + Q  +
Sbjct: 176 AQINENLA----KPFANARNLAAGTLRNLNSEVSAKRKLKAFFYFVPNALTLGCRSQSAV 231

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L +++   FPV+  V   +    ++ Y  +    R  L + +DGLV K+D F    QLG 
Sbjct: 232 LAQLKQWNFPVSKAVASFDRPEALIEYLEQFDQTRDQLNFQVDGLVVKLDNFHFYDQLGF 291

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++ PRW +++KF  K   T+L  + + +GRTG +   A+L+PVN+ G +++ ATLHN D
Sbjct: 292 TSKFPRWALAYKFKPKFVQTKLRGVLVTVGRTGKINYTAQLDPVNLEGTVVSAATLHNFD 351

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YIK            +DIR+ D V++ +AGE+IPKV+++ +  R    QP    + CP C
Sbjct: 352 YIK-----------EKDIRLNDTVIIYKAGEIIPKVLEVCLPLRTAANQPIPEQTHCPAC 400

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           Q+ +V+  +           CT    C  + LE + +FVS+ A +I+GL  Q +   +++
Sbjct: 401 QAPLVQYKDE------VDQYCTNER-CDQRNLEAINYFVSKTAMDIQGLSIQTISKLYEN 453

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +R   D++ L+  +         I   G+V    L  SI + +   + R +  L
Sbjct: 454 N----LVRSVVDLYHLKEHKAAVLALELKI---GEVLFNKLISSIEQSKTKGMARLLTGL 506

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI+HVG  +A+SL K++           NI A  +    +L+ +P VG  +A+++  ++ 
Sbjct: 507 GIKHVGQVLAKSLTKHF----------ENIDALQSASMETLLELPDVGPTVAESLFNWFH 556

Query: 618 NPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEYVT-QL 673
           N  N+  + AL                + +S    K  V TG+   I R   +  +  + 
Sbjct: 557 NDNNLQLLAALKAVGVQMDALKSNTNFDTASIYFQKSFVITGSFP-ISRDTIKNLLVNKY 615

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711
               +  ++ K D ++ G      KLE+A+ L + I+NE
Sbjct: 616 DCRFTNNVTSKVDFVLAGIKATPRKLEQAKALNIPIINE 654


>gi|330830678|ref|YP_004393630.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565]
 gi|328805814|gb|AEB51013.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565]
          Length = 787

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 218/705 (30%), Positives = 360/705 (51%), Gaps = 69/705 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
               L + ++ +   YY    P + D+EYD L R   A+    P+L   + P  P  ++G
Sbjct: 7   RHRQLCELLTEYGHQYYVLDNPTVPDAEYDRLMRELIALEADHPEL---KTPASPSVRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+   +  +V H IP LSL+ +++ E+L+ F  R+    ++  D    F  EPK+DG  +
Sbjct: 64  GQPLTAFSQVRHEIPMLSLDNVFSSEELQAFEQRMSDRLKR--DVRFTFCCEPKLDGLAV 121

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           ++ Y  G+ V AA RGDG +GE+++  +R I  IP  L     P+ +EVRGEV++ K  F
Sbjct: 122 SLLYVNGQLVQAATRGDGATGEEITENVRTIKAIPLALRGSGWPDRLEVRGEVFMPKAGF 181

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
            A+N + +A G K + NPRNAA+G LR+L+     +R L+F+ +G+G   E+     +  
Sbjct: 182 EAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVGVGGELLGDSHFGR 241

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L +++  G P++  V+      G  ++++++ + R  LPY+IDG+VYKVD   LQ++LG 
Sbjct: 242 LNQLKAWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELGF 301

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            AR+PRW  +HKF  ++  T L +++ Q+GRTG +TPVA+L+PV +GG  ++NATLHN D
Sbjct: 302 VARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNAD 361

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+ L            + VGD V+V+RAG+VIP++V ++  +R  DA+   FP+ CP+C
Sbjct: 362 EIERL-----------GVMVGDTVIVRRAGDVIPQIVAVVEAQRPSDARAILFPTECPVC 410

Query: 438 QSRVVRDLNPKT------GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            S +V++            K++A  +CTGGL C AQ  E LKHFVSR+A +IEG+G + +
Sbjct: 411 GSDIVQEKKIVQQKTKTLEKILATRKCTGGLNCLAQVKESLKHFVSRNAVDIEGVGDKVI 470

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           ++ PAD+F L      S      + GF +VS  N +D+I  +   +  
Sbjct: 471 EQLVD----GGLVKHPADLFRL------SVDDFLKLDGFAEVSAKNAFDAIQAKIGTTSS 520

Query: 552 -RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             F+F LGI  VG  +A  L        N       II+          ++  +G  I  
Sbjct: 521 IDFLFGLGIPSVGQVVAERLIVELGCLDNIISAPRGIIS----------QINGIGLDIDA 570

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS--------IGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            I +++       +V  L   +           + + + +++  IE       G  +   
Sbjct: 571 EISDYFSAASVSDSVMELADVMGVERSGISISRMYKRKFSMAKIIEGLN--IDGVAKTFS 628

Query: 663 RHKAQEY-------------VTQLGAVVSAILSR-KTDIIIVGDN 693
              ++E              +  +       +S+ K D ++ G  
Sbjct: 629 EAISKEITLDQLCNGLQHGDLVGITTTAGTSISKQKIDAVVKGIK 673



 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 6/182 (3%)

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI----IAHNNDDWLSLIR 600
           +R  S+ + I  L I  V    + +++K  ++       + +     I       +S  +
Sbjct: 606 KRKFSMAKIIEGLNIDGVAKTFSEAISKE-ITLDQLCNGLQHGDLVGITTTAGTSISKQK 664

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  V   I +           +    ALL           +   S I  K  V TG+   
Sbjct: 665 IDAVVKGIKEKKPLLDAVKIYVDK-HALLDVDDLLDSEPAEKSDSFIAGKSFVITGSFTF 723

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R K    + +LG      +S+ TD++I+GD  GSKL+KA +LG+KI+NE++   LL+ 
Sbjct: 724 MSRDKLNSKLKELGGESKTSVSKNTDMLIMGDKAGSKLKKATELGIKIINEDELRSLLES 783

Query: 721 YN 722
            N
Sbjct: 784 EN 785


>gi|301633469|gb|ADK87023.1| DNA ligase (NAD(+)) [Mycoplasma pneumoniae FH]
          Length = 658

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 201/699 (28%), Positives = 347/699 (49%), Gaps = 55/699 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            ++ ++ +++  +D  YY    P++ D EYD L ++  A+  A P+L +   P+ P  ++
Sbjct: 5   AQIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQ---PDSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +  +  K  H  P LSL+  ++   +  FI  I      ++     F +EPKIDG  
Sbjct: 62  GGIVVEAFNKFPHQNPMLSLDNAFDTATIASFIANINNLTGVQN----RFVVEPKIDGVS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G    A  RGDG  GEDV + ++ I +IP  L++   + +E+RGE+++ K  F
Sbjct: 118 ISLTYENGLLTRALTRGDGLVGEDVLSNVKTIKSIP--LTIPFHKQVEIRGEIFVDKKTF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N+ +     KP+AN RN A+G LR LN      R L  F + +     +  + Q  +
Sbjct: 176 AQINENLA----KPFANARNLAAGTLRNLNSEVSAKRKLKAFFYFVPNALTLGCRSQSAV 231

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L +++   FPV+  V   +    ++ Y ++    R  L + +DGLV K+D F    QLG 
Sbjct: 232 LAQLKQWNFPVSKAVASFDRPEALIEYLDQFDQTRDQLNFQVDGLVVKLDNFHFYDQLGF 291

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++ PRW +++KF  K   T+L  + + +GRTG +   A+L+PVN+ G +++ ATLHN D
Sbjct: 292 TSKFPRWALAYKFKPKFVQTKLRGVLVTVGRTGKINYTAQLDPVNLEGTVVSAATLHNFD 351

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YIK            +DIR+ D V++ +AGE+IPKV+++ +  R    QP    + CP C
Sbjct: 352 YIK-----------EKDIRLNDTVIIYKAGEIIPKVLEVCLPLRTAANQPIPEQTHCPAC 400

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           Q+ +V+  +           CT    C  + LE + +FVS+ A +I+GL  Q +   +++
Sbjct: 401 QAPLVQYKDE------VDQYCTNER-CDQRNLEAINYFVSKTAMDIQGLSIQTISKLYEN 453

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +R   D++ L+  +         I   G+V    L  SI + +   + R +  L
Sbjct: 454 N----LVRSVVDLYHLKEHKAAVLALELKI---GEVLFNKLISSIEQSKTKGMARLLTGL 506

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI+HVG  +A+SL K++           NI A  +    +L+ +P VG  +A+++  ++ 
Sbjct: 507 GIKHVGQVLAKSLTKHF----------ENIDALQSASMETLLELPDVGPTVAESLFNWFH 556

Query: 618 NPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEYVT-QL 673
           N  N+  + AL                + +S    K  V TG+   I R   +  +  + 
Sbjct: 557 NDNNLQLLAALKAVGVQMDALKSNTNFDTASIYFQKSFVITGSFP-ISRDTIKNLLANKY 615

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711
               +  ++ K D ++ G      KLE+A+ L + I+NE
Sbjct: 616 DCRFTNNVTSKVDFVLAGIKATPRKLEQAKALNIPIINE 654


>gi|154507531|ref|ZP_02043173.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799320|gb|EDN81740.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC
           17982]
          Length = 777

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 202/799 (25%), Positives = 346/799 (43%), Gaps = 99/799 (12%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           + P+   + E  R   + L   I+     YY    P + D++YD + R  + I   +P L
Sbjct: 1   MDPMADSTFETTRDRYNDLVDRINEARAAYYDRDSPTLADADYDRMYREVEEIEERYPQL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
             +   + P   +GG ++    +V H    +SL+ ++++E+L  + TR+       D   
Sbjct: 61  RGA---DSPTMSVGGSVDSGFSEVRHLAQMMSLDDVFSLEELAGWETRMAEATGISD--- 114

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           +  T E K+DG  I + YE G+ V AA RGDG+ GEDV+A  R I +IP+ LS  +P  I
Sbjct: 115 LEMTTEVKVDGLSINLLYENGRLVRAATRGDGYVGEDVTANARTIASIPQTLSGTVPTRI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           EVRGEVY    DF A N+  +  G K + N RNAA+G LR+ +P +   R L    HG+G
Sbjct: 175 EVRGEVYFPVADFAAFNEARVEAGEKTFVNARNAAAGSLRQKDPAETAKRPLAMVAHGIG 234

Query: 245 KTSE----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
                        Q    +++R  G PV+   R       I     E+   R  L ++ID
Sbjct: 235 FVEAGEDFTEPITQMGWYEQLRDWGLPVSPYTRVLTGRKAIEERIAELGEKRHDLEHEID 294

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+++  LQ+ LG  +R+PRW  ++KF  ++  TRLLDI +Q+GRTG +TP   +E 
Sbjct: 295 GVVVKINDLDLQRSLGSTSRTPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMES 354

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ +  ATLHN   +             + + +GD V++++AG+VIP++V  + + 
Sbjct: 355 VLVAGSNVARATLHNAQEVAR-----------KGVLIGDLVVLRKAGDVIPEIVAPVEDA 403

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R+   +PF  P+ CP C + +V++      +     RC     C AQ  ERL H  +R A
Sbjct: 404 RNGSERPFVMPTECPSCGTTLVQEK-----EGDVDLRCPNKGLCPAQITERLAHVGARSA 458

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSI---RIPADIFTLQRRQQTSTT------------KIE 525
            ++EGLG +      + E+    +    +     TL+     +              + E
Sbjct: 459 LDVEGLGDESALAMTQPENDRDEVAAALVAGHSVTLEDGTVLTLEGGRELPHGEQITRAE 518

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR-SLAKYYLS-------- 576
            +L            ++   R   L   +    ++  G E       +Y+ +        
Sbjct: 519 ELLPAPQAPALRTEAALFDLRAEDLRDVMVWKPVKKKGEETGDWKQVRYFWTKAYKPRKL 578

Query: 577 ----------------YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA----------- 609
                            +    E+    +      L  + +  VG   A           
Sbjct: 579 RGQTVFEPIEPTASKGTEKMLVELEKAKSQPLARVLVALSIRHVGPTAARALAEKFLSMD 638

Query: 610 ---------------------QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
                                +++ +++    ++  ++A  +          +  S  + 
Sbjct: 639 ALRAASVEELSAVEGVGEEIGRSLRDWFTVDWHLEVLQAWARAGVRMADEAPEPTSDVLA 698

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
              +V +G +    R  A+E +T  G      +S+KT +++ G   GSK  KA+ LGV +
Sbjct: 699 GLTVVVSGAMPGYDREGAKEAITSRGGKAVGSVSKKTSLVVAGPGAGSKAAKAEALGVPV 758

Query: 709 MNEEQFLFLLQQYNTTLRI 727
           + E+QF  LL+     + +
Sbjct: 759 ITEQQFTDLLEGGLAAVGL 777


>gi|300813320|ref|ZP_07093675.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512591|gb|EFK39736.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 664

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 197/715 (27%), Positives = 345/715 (48%), Gaps = 59/715 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QA +++  L +E++ +   YY   K +I D  YD +      +     +       + P 
Sbjct: 2   QASEKMQKLVKELNRYGYYYYTLDKSLIDDKVYDRIYDELVNLEKE--ENIVLA--DSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
            ++GG++  S  K  H  P  S+ K  + ++LR +I +   F +  +++       +   
Sbjct: 58  TRVGGQILKSFQKHKHLNPLYSMNKAQSFDELRDWIEKNKNFIENYNESHEDKLSEMELI 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           LE K DG  I + YE G    A  RG+G  GE +++ ++ I +IP  LS++   ++E++G
Sbjct: 118 LELKFDGLTINLTYEDGYLKMATTRGNGLIGEVITSQVKTINSIP--LSIDYKGLVEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           E  +        N +          N RNAA+G LR L+P +   R L  + + +     
Sbjct: 176 EGLMPLKSLEEYNKKASEK----LKNARNAAAGALRNLDPKETKARNLTAYFYNVNYIEG 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   EM   ++  GF V+    +  +F  +    N +  IR  LP  IDG+  K+++
Sbjct: 232 KNFKDDVEMKAFLKSQGFLVSKYNYKVKSFKDVQEKINYIADIRKDLPIQIDGVTIKIND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  ++ L    + PRW I++KF  + A ++LL++   +GR+  +TP A +EPV I G  I
Sbjct: 292 FKTREILSFTQKFPRWSIAYKFEAEIAESKLLEVVWNVGRSSKVTPSAIIEPVEIDGVTI 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I             + +R+   +L++R+ +VIP+++ ++ +         
Sbjct: 352 KRATLNNFDDINR-----------KKLRLNSNILIRRSNDVIPEILGVLPS--DEKTFAI 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C + + +D             C   L+C  Q + RL HF SRDA NI G  +
Sbjct: 399 KRPEVCPACGAHLFQD--------GVHIFCPNTLSCRPQLVSRLVHFASRDAMNINGFSE 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++ F         ++   DI+ L+         I  + GF +    NL ++I   +N 
Sbjct: 451 KTIEKFMDE----LGLKEIPDIYNLK------YDDIIKLEGFKEKKTKNLLEAIENSKNP 500

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FI+++GI +VG + AR LAK+Y ++          +A +   +  LI V  +G I 
Sbjct: 501 FLSNFIYAIGIANVGIKTARDLAKHYKNF----------MAFSKASFDDLIEVGDIGPIT 550

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ I+ F+++      ++ L       +     N   + E K +V TG+L + +R + +E
Sbjct: 551 AKEIINFFEDDHIKDGLQKLFSYGIDVVYEENLNKDLKFEGKTVVITGSLSR-KRKELEE 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +   GA VS+ +S+ TD +IVG+NPGSK +KA++L V+I+NEE+   +L   + 
Sbjct: 610 ELINNGAKVSSSVSKNTDFLIVGENPGSKYDKARELSVEILNEEELNKILGGGHD 664


>gi|257066474|ref|YP_003152730.1| NAD-dependent DNA ligase LigA [Anaerococcus prevotii DSM 20548]
 gi|256798354|gb|ACV29009.1| DNA ligase, NAD-dependent [Anaerococcus prevotii DSM 20548]
          Length = 666

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 182/712 (25%), Positives = 339/712 (47%), Gaps = 58/712 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             R+++  L ++I   +  YY   +P++ D EYD +      +      +      + P 
Sbjct: 2   DKREKIDKLIEKIENLNYHYYTLDEPLVSDGEYDQIYDELRKLEEETGYVRD----DSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
             +GGE+     K  H    LS  K    E+L  +I R  R     + N       + + 
Sbjct: 58  QVVGGEILDKFEKHFHITKLLSQNKAQTHEELEAWIDRCNRLRDDYNINHDDKLAELEYI 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K DG  + + Y  G  V AA RG+G  GE++S  +R I +IP  +      ++E++G
Sbjct: 118 MEYKFDGLTVNLTYNNGNLVNAATRGNGIIGEEISPQVRTIRSIPNRIKEK--SLLEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E  +  ++    N+E          N RNAA+G LR LN  +   R L  + + +  T+ 
Sbjct: 176 EALMPLSELTRYNEENELQ----LKNARNAAAGALRNLNTKETAKRKLTAYFYSIP-TNN 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +    + +ML+ ++  G  ++   ++ +    +++  + ++  R  +    DG+V K+++
Sbjct: 231 LDFATEEDMLEFLKEQGLLIHPYHKKVHNLEEMLAELDFIEEERKNIDILTDGVVIKIND 290

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+ LG   + PRW I++KF  ++ +T L ++   +GR+G +TP A L+PV   GA +
Sbjct: 291 KRTQEVLGSTNKFPRWSIAYKFEAEEYTTTLREVVWNVGRSGKVTPSAILDPVEFSGATV 350

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATL+N D I             + +R+G +V ++R+ +VIP+++ ++ +E     +  
Sbjct: 351 SRATLNNYDDI-----------IRKKVRIGSKVFIRRSNDVIPEILGVV-DENQEGTKEI 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             PS CP C S +++              C   ++C  Q L R++HF SR+A +IEGL +
Sbjct: 399 EKPSKCPYCGSELIQ--------GNVHIICPNSISCKPQLLARMEHFTSRNAMDIEGLSE 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +    +       I    DI+ L            N+  FGD    NL ++I   + +
Sbjct: 451 KTIAQLMEE----LDINEVDDIYDLSYDDLI------NLDRFGDKKTKNLLNAIEASKKV 500

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L+ FI+++GI +VG   +R LA  + S+                    L  +  +G+I 
Sbjct: 501 DLDNFIYAIGIPNVGERTSRDLANKFKSFDALRHA----------SLEELSDIDDIGEIT 550

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           AQ I+E++++P    +++ LLK+          N S  + +   V TGT+   +R   ++
Sbjct: 551 AQNIIEYFRDPNISKSIDNLLKKGIEISEVKADNNSDSLNDMTFVITGTIDNYKRDDIKK 610

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +   GA V+  +S+ TD+++ G+  GSK +KA+ LG++I   ++    L++
Sbjct: 611 LLESNGAKVTGSVSKNTDVVLAGEKSGSKKDKAKNLGIEIYENDKLYDFLKE 662


>gi|307718507|ref|YP_003874039.1| DNA ligase [Spirochaeta thermophila DSM 6192]
 gi|306532232|gb|ADN01766.1| DNA ligase [Spirochaeta thermophila DSM 6192]
          Length = 673

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 221/719 (30%), Positives = 355/719 (49%), Gaps = 57/719 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++A+KE+  L + +   D  YY   +P + D EYD+L  R   +   FP L R+   
Sbjct: 1   MTEQEAKKEIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFDRLKTLEAQFPHLKRA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G ++ +   +V H+IP LSL+K +   ++  +I +  R   +     +   +E
Sbjct: 58  DSPTQRVGSDLTVDFPEVAHTIPVLSLDKAYTETEVLSWIEKTERAAGR----PLGCVIE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + Y  G    A  RG+G  G D++   R I  IP  L +     + VRGEV
Sbjct: 114 EKIDGVSLVLYYRGGILDRAVTRGNGRVGNDITPNARTIRQIP--LRIPETGEVVVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+    F  +N  M      PYANPRN A G+LRR N  ++ R    F+   G       
Sbjct: 172 YLPLQYFDEINARM----EVPYANPRNLAGGVLRRKNSAEVARVPLHFLAYDGYLP-FPV 226

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQ-----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               E L  +   GFPVN    +      +    I ++  + ++ R+TL Y IDGLV+KV
Sbjct: 227 ATYTESLDLLIEWGFPVNPRHERIPAGTPDRAERIRAFIEKERTERATLDYQIDGLVFKV 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +E  ++ +LG     PRW I++KF   QA T L+ ID+Q+GRTG +TPVARL+PV + G+
Sbjct: 287 NELDVRDRLGYTGHHPRWAIAYKFEAPQAVTELVRIDVQVGRTGRVTPVARLKPVELSGS 346

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+N TLHNEDY++ L+           +  GD V + + G+VIP +  ++  +      
Sbjct: 347 TISNVTLHNEDYVQALE-----------LAPGDLVAISKRGDVIPAIEKVV-EKNEEGVP 394

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            +  P  CP C SR+ R          A H C    +C A    RLK FVS    +I  L
Sbjct: 395 VWRMPEHCPECSSRLERR--------GAHHFCPN-RSCPAVITGRLKFFVSPKQMDIRVL 445

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +DF  +       IR   D++T   R+        +  GFG+  +  +   I + +
Sbjct: 446 GNETIDFLVEK----GYIRRIPDLYTFDYRRLL------DEPGFGEKKINLIVQGIEESK 495

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                  + +LGI  VG  +  +L +  ++  +   EI      +  D  +L R+  +G+
Sbjct: 496 RRPFSTVLVALGIPDVGPSVVETLIRGGITGIDRLLEI-----ADRGDVDALTRLEGIGE 550

Query: 607 IIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RH 664
             A+ ++E  ++P     +E L K  +S    R E       E +    TG+ +    R 
Sbjct: 551 KTARQLIETLRDPEWRKEIEELRKAGLSFEEERPEAVSGGPFEGQVWCVTGSFRHFTPRS 610

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +A+E ++ LG  V + +S KT  ++VG+NPGSKLEKA+ LGV+++ E+QF+ +L+    
Sbjct: 611 RAEELISSLGGRVVSSVSSKTTHLLVGENPGSKLEKARSLGVQLVTEDQFIEMLKGAGV 669


>gi|257460489|ref|ZP_05625590.1| DNA ligase, NAD-dependent [Campylobacter gracilis RM3268]
 gi|257441820|gb|EEV16962.1| DNA ligase, NAD-dependent [Campylobacter gracilis RM3268]
          Length = 668

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 227/699 (32%), Positives = 355/699 (50%), Gaps = 60/699 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E  S    ++     YY   +PI  D EYD L  + +      P+LA S     P  +IG
Sbjct: 5   EYRSAVDTLNAWARAYYTDDRPIASDEEYDELYSQAEKFEEQNPELALSY---SPTRRIG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G ++    K+ H     S+E I++  DL  ++ R  +       +   F +EPK DG  +
Sbjct: 62  GAISEGFSKLAHGAQMWSMEDIFDDADLLAWLARGEK-------SGAQFYVEPKFDGASL 114

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + YE G  + AA RGDG  GEDV+   RAI ++P  L +     IE+RGE  I+K+DF 
Sbjct: 115 NLTYEGGVLISAATRGDGLIGEDVTQNARAIKSVP--LQIPYAGRIEIRGETLIAKSDFD 172

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
           ALNDE  A G   ++NPRNAA+G LR+L+   +  R L F   G+G+ S  FA    +++
Sbjct: 173 ALNDERAANGESLFSNPRNAAAGSLRQLDSAIVAKRKLKFIPWGVGEHSLSFA-LHSQIM 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +R LGF  +   R   +   I + Y  + S+R++    +DG+V +V+E S   Q+G  
Sbjct: 232 EFVRSLGFLRDEFCRICKSASEIRAAYEALHSMRASKDLMLDGMVIRVNELSKCAQMGYT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            + PR+M+++KF   +  TRL +I++Q+GRTG +TPVA +  VNI GA ++NATLHN D 
Sbjct: 292 VKFPRFMVAYKFPAVEKVTRLREINLQVGRTGAVTPVAVVYSVNIDGANVSNATLHNFDE 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I  L            +   D V + R+G+VIPK+  +    R       S P  CP+C 
Sbjct: 352 IARL-----------GLMKNDFVGIIRSGDVIPKITSVYKQRRDGTQSEISRPDRCPVCG 400

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            +++           A  +C   L C A+ +  L +F S+   NIEGL    +   F+S 
Sbjct: 401 EKLL--------DEGALIKCQN-LDCKARVIGSLIYFCSKKCMNIEGLSDATITQLFESG 451

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I    DI+ L  +            GF D  ++NL  +IN  +N  LERFI SLG
Sbjct: 452 K----ISKIGDIYALGAQDLADLE------GFADKKISNLLGAINASKNAPLERFIASLG 501

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I H+G   AR +A  +   Q++     + I          +R+   G+ +A+++ EF + 
Sbjct: 502 IEHIGEVAARKIAAAFG--QDWLDASEDEI----------LRLEGFGEAMARSLAEFCK- 548

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
             N   +  L + ++P   + +  V S   ++ +V TGTL +  R + +  +  +GA V 
Sbjct: 549 -INREKILNLSEIIAPRAPQMQT-VKSAFTDRSVVITGTLSRP-RDEFKAKLLAMGAKVQ 605

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             +S KTD ++ G   GSKL+KA+ LGV++++E +F  L
Sbjct: 606 GSVSAKTDFVLAGAEAGSKLQKARSLGVRVIDESEFEAL 644


>gi|229828351|ref|ZP_04454420.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM
           14600]
 gi|229792945|gb|EEP29059.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM
           14600]
          Length = 675

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 197/712 (27%), Positives = 344/712 (48%), Gaps = 57/712 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +    L  +I+YH D YY   K  I D EYD L ++  A     PD  R   P+ P  KI
Sbjct: 4   ETYQELIDQINYHMDLYYNQDKTEISDYEYDQLMQQLKAAEAEHPDWVR---PDSPSQKI 60

Query: 79  GGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG     +  KV H++P LS+E +++ + +  ++ ++             F++E KIDG 
Sbjct: 61  GGTTKREAGVKVEHNVPMLSIEDVFDFQSVIDWVKKVQEM-----HPDAIFSVEQKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+RY KG+   A  RGDGH GEDV+   RAIP +P  L +  P  +E+RGEVY++++ 
Sbjct: 116 SMTLRYRKGRLELAETRGDGHIGEDVTQNARAIPQVPDKLPITDP-YLELRGEVYMTRDR 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F A N       +   ANPRN A+G LR+L+P     R L  F+  +      F + Q +
Sbjct: 175 FEAYNARQEKDEKPLAANPRNLAAGTLRQLDPGITAKRGLALFIFNVQDGEPHFMRSQLD 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L ++  +G PV    ++A+    +++   E+  +R  L YDIDG V K+D+ + +K   
Sbjct: 235 NLDRLSAMGLPVT-YHKRADNAKEVIAAIEEIGKMRDQLGYDIDGAVVKIDQIAYRKDFP 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE------PVNIGGALITN 370
             A+     I++K+  ++    +  I + +GRTG LT   +        P  + G  ++ 
Sbjct: 294 AGAKYSAGHIAYKYPPEERVVEMDQILVDVGRTGKLTFTGQFHDVKTGGPARLCGTSVSR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+DYI+ +            I +G    + ++GE+IPK+   +   +      F  
Sbjct: 354 ATLHNQDYIRQM-----------KIGIGGHYKLFKSGEIIPKLNGCVKEPKA----VFKA 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P FCP+C   + ++      +  A  RC    +C AQ    + +F  R   +I GLG+  
Sbjct: 399 PQFCPVCGEELEQE------EGTADIRCVNP-SCPAQISRTIAYFAGRSCMDIAGLGQTL 451

Query: 491 LDFFFKSEDPA---FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +D   + +      F +    DI+ L+  + +  ++   ILG  + +   +  +I   ++
Sbjct: 452 VDALCQEKITGSETFYLTSYVDIYRLREHRDSLISR--GILG-KEKNTDKILAAIEDSKS 508

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R +  LGIR+VG   A +L   Y           +++   +  +  L  +P +G+ 
Sbjct: 509 QRPTRLLAGLGIRNVGLSTAAALMAVYP----------DLMDLMHAGFEDLQGIPDIGEK 558

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            A  IV F+ +      + A  + +  ++   E+  +  +    +V TG L  ++R +A+
Sbjct: 559 TAADIVHFFAHEDKRRMM-ADFRALGLTMRMPEEEKTEALAGLTIVVTGKLPGMERSEAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + + G   +  +S KTD ++ G+  GSKL+KA+ LG+ +++EE    L++
Sbjct: 618 ALIEKNGGKCTGSVSGKTDYLLAGEAAGSKLDKAKSLGIPVIDEEGLKALIE 669


>gi|213618983|ref|ZP_03372809.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 544

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 195/561 (34%), Positives = 314/561 (55%), Gaps = 42/561 (7%)

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + + 
Sbjct: 2   TPDSPTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWC 59

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            E K+DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVR
Sbjct: 60  CELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVR 119

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV++ +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G   
Sbjct: 120 GEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILE 179

Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                      L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 180 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 239

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 240 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 299

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 300 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 348

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 349 PIVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 402

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K +
Sbjct: 403 GDKIIDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAK 452

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +       + +           +VP VG 
Sbjct: 453 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGI 502

Query: 607 IIAQAIVEFYQNPRNICAVEA 627
           ++A  +  F+    N   +  
Sbjct: 503 VVATHVFNFFAEESNRDVIGQ 523


>gi|269957188|ref|YP_003326977.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894]
 gi|269305869|gb|ACZ31419.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894]
          Length = 830

 Score =  613 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/833 (24%), Positives = 342/833 (41%), Gaps = 155/833 (18%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
             L  + A++  + L   +      YY++  P++ D+EYDA      A+  A P LA   
Sbjct: 9   AELDEQAAQRRWAELRDLVEADQRAYYEHDSPLVSDAEYDARLHELAALEAAHPALA--- 65

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P  P  ++GG        V H    LSL+ ++++++LR +  R+ R         + + 
Sbjct: 66  TPESPTQRVGGAAASGFTTVEHVERMLSLDNVFSVDELRDWDARVARDLGA---GDVGYL 122

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188
            E KIDG  I + YE G+   AA RGDG +GEDV+     I  +P+ L     P ++EVR
Sbjct: 123 AEVKIDGLAIALLYEHGRLTRAATRGDGRTGEDVTVNALRIADVPQQLDGEGHPALVEVR 182

Query: 189 GEVYISKNDFLALNDEMIA---------------------------VGRKPYANPRNAAS 221
           GE++I    F  LN+                                    +ANPRNAA+
Sbjct: 183 GEIFIPTASFTRLNELQEELRARVVEDTRARQGARFDEEKARLAALRRFPTFANPRNAAA 242

Query: 222 GILRR-LNPTDITRY---------LNFFVHGLGKTSEIFAKG-----QYEMLQKMRCLGF 266
           G LR+ L+  D             L  +VHG+G       +      Q +        G 
Sbjct: 243 GGLRQQLDKKDGLERDAGLARIESLRLYVHGIGALQWEAGEHAELGRQSDAYSYFATWGL 302

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           PV+   R  N    ++       + R  + +++DG+V KVD    Q++LG  +R+PRW I
Sbjct: 303 PVSPHNRVVNGIDAVIEMIEHFGAHRHDIEHELDGIVVKVDALPDQQRLGATSRAPRWAI 362

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K+  ++ +TRLL I + +GRTG  TP A +EPV + G+ +  ATLHN+D ++      
Sbjct: 363 AYKYPPEEVNTRLLAIQVGVGRTGRATPYAVMEPVLVAGSTVRQATLHNQDVVRA----- 417

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD--AQPFSFPSFCPICQSRVVRD 444
                 + +RVGD V++++AG+VIP+++  +            F  P+ CP C + +   
Sbjct: 418 ------KGVRVGDVVVLRKAGDVIPEILGPVPAAADDGFPRHDFVMPAQCPECGTPL--- 468

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF-S 503
                 +     RC    +C AQ   R++H  SR   ++EGLG+       +  +PA   
Sbjct: 469 --RPMKEGDVDLRCPNARSCPAQVRGRVEHIGSRGGLDVEGLGEVAAAALTQPLEPADPP 526

Query: 504 IRIPADIFTLQ-----------RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           +   A +F+L            R  +T   +  + +G      T    +   +     +R
Sbjct: 527 LDTEAGLFSLTIEELLPIRVVVRDPETGLPRPYDGVGESAELPTADGATFTAKVVRPFQR 586

Query: 553 F-----------------------------------------------------IFSLGI 559
                                                                 + SL I
Sbjct: 587 LVERTYPPGTETMTPAERRKAGIRKDHPVYGPAKSAQVLLDELDRAKTKDLWRQLVSLNI 646

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVG   AR+LA ++ S        +  +A           V  VG +I   +  ++   
Sbjct: 647 RHVGPVAARALADWFGSLDAIRAASSEELAA----------VEGVGPVIGAELQAWFDVD 696

Query: 620 RNICAVEALLKEV-------------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            ++  V++  +                 +           +    +V TG+L    R  A
Sbjct: 697 WHVDIVDSWTRAGVRFATPGHPGPEAMAAQAAAGAAPQGPLAGLTVVVTGSLDGFTRDGA 756

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   G   +  +S+KTD ++VG+N GSK  KA++LG+ +++E  F+ LL 
Sbjct: 757 KEAIIAAGGKSAGSVSKKTDYVVVGENAGSKAAKAEELGLPVLDEAGFVALLD 809


>gi|154174322|ref|YP_001408016.1| NAD-dependent DNA ligase LigA [Campylobacter curvus 525.92]
 gi|190359239|sp|A7GXS4|DNLJ_CAMC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|112803310|gb|EAU00654.1| DNA ligase, NAD-dependent [Campylobacter curvus 525.92]
          Length = 654

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 211/694 (30%), Positives = 344/694 (49%), Gaps = 61/694 (8%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
              ++     YY    PI  D EYDAL     A     P     +    P  +IGG ++ 
Sbjct: 17  VATLNAWAKAYYDDDAPIASDEEYDALYHEVLAYEQVNP---AQKSLFSPTTRIGGGVSE 73

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
              K  H     S+E I++  +L  ++ R  +        ++ F  EPK DG  + + YE
Sbjct: 74  GFSKARHIKQMWSMEDIFSQLELVAWLKRGEK-------QNLSFVAEPKFDGASLNLLYE 126

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
           KG  V A  RGDG +GE+V+   R I +IP  L+++    IE+RGEV I K DF A+N+E
Sbjct: 127 KGMLVRAITRGDGITGEEVTQNARVIKSIP--LNISYDGRIEIRGEVVIKKADFDAINEE 184

Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
               G    +NPRNAA+G LR+L+      R L F   G+G+ +   AK   E+++ +R 
Sbjct: 185 RTRNGETLLSNPRNAAAGSLRQLDSAVTAKRKLLFIPWGVGEQNLGLAK-HSEVMKFVRD 243

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           LGF  ++  +  +   G+   YNE+   R      +DG+V +VD+ +  ++LG   + P+
Sbjct: 244 LGFYRDDFFKILD-ADGLAGAYNELLKQRDEKDVMMDGMVIRVDDLARCEELGYTVKFPK 302

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           +M++ KF   + +TRLLD+ +Q+GR+G++TPV  L+ V I GA + +ATLHN D I+ L 
Sbjct: 303 FMVAFKFPAIEKTTRLLDVALQVGRSGVVTPVGVLDEVVIDGARVKSATLHNFDEIERL- 361

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                      +   D + + R+G+VIPK+  +    R     P   P FCP C S ++ 
Sbjct: 362 ----------GVMKNDLISIIRSGDVIPKITSVFKERRDGTQTPIIRPKFCPECGSHLL- 410

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
                        +C   L C A+ +  + H+ S+   NI+GLG+  ++  ++       
Sbjct: 411 -------DEGVFIKCQN-LNCRARVINSIIHYASKKCLNIDGLGEAIINLLYEK----GL 458

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           I    DI++L+     +        GF D    NL D+I   +  SL RFI  LG  H+G
Sbjct: 459 ISRVIDIYSLKFEDLMALE------GFKDKKAQNLLDAIEASKGASLARFITGLGCEHIG 512

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A+ +A+ +   + + +           D+  +  +   G+ +A ++++F +   N  
Sbjct: 513 EVAAKKIAQNFG--EGWLEA----------DFDEVKNLEGFGEEMANSLMDFIEV--NKD 558

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            + AL   V PS  R ++   +    K +V TGTL +  R + +  +   GA V   +S+
Sbjct: 559 EILALQSIVRPSFER-KQITQNAFSGKSVVITGTLSRP-RDEIKAELEGYGAKVVGSVSK 616

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           KTD ++ G N GSKL+KA +LGV++++E +F  L
Sbjct: 617 KTDFVLAGSNAGSKLQKAVELGVRVIDEGEFERL 650


>gi|256545196|ref|ZP_05472562.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170]
 gi|256399237|gb|EEU12848.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170]
          Length = 668

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 188/708 (26%), Positives = 337/708 (47%), Gaps = 58/708 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L  +I+  +  YY    P + D EYD L      +           +   P  ++G
Sbjct: 8   KIDELIDKINELNYHYYTLDNPTVSDGEYDKLYDELLNLEKK----TGYVNEFSPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPK 133
           G +     K  H     S +K  N   L+ +I R  +   + +         + F  E K
Sbjct: 64  GAILDKFEKHFHITRLYSQDKSQNYTQLKDWIIRTKKLRDQYNKTHEDKLEELEFITEYK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + YE G    AA RGDG SGEDV+  +  IPTIP  +      ++E++GE  +
Sbjct: 124 FDGLTINLTYEDGLLKTAATRGDGISGEDVTKQVLTIPTIPTKIKEK--SLLEIQGEAVM 181

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
             +     N+E       P  N RNAA+G +R L+ +    R L  + + +  T+ +  K
Sbjct: 182 PLSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTKKRNLKAYFYQI-STNNLDFK 236

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            + E L+ ++    PV    +    F  IV   + +K  R  +    DG+V KV++   Q
Sbjct: 237 TEEEKLEFLKEQKLPVYPYKKVIKKFDDIVKEIDFIKEERHHIDVLTDGVVIKVNDVKTQ 296

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + PRW I++K+  ++ +T LLD+   +GR+G +TP+A LEPV+  G  +  AT
Sbjct: 297 EVLGYTNKFPRWSIAYKYDPEEYTTTLLDVVWNVGRSGKVTPLAILEPVDFSGVTVQRAT 356

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N D I             + +++G +V ++R+ +VIP+++ ++ +E   + +    P 
Sbjct: 357 LNNYDDI-----------LRKKVKIGSKVFIRRSNDVIPEILGVV-DENQENTKEIEKPD 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S ++        +      C   ++C+ Q   R+ HF SRDA +IEGL ++ ++
Sbjct: 405 KCPYCHSELI--------EGNVHIYCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTIE 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         I+   D++ L            N+  F +    NL ++I   ++  L  
Sbjct: 457 LFINK----LGIKEIYDLYDLSYDDLI------NLESFKEKKTNNLLNAIENSKSCELNH 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI ++GI +VG + AR LA+ Y S+    +   + +          I +  +G+  A+ I
Sbjct: 507 FIHAIGIPNVGIKTARDLAEKYKSFDKLRETKQDDL----------IEIEDIGEKTAEDI 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           V+F+ +     +++ LL +            S+ ++  K+V TGT++  +R+  +  + +
Sbjct: 557 VDFFNDSNIKKSLDILLSKGIKIKAIDTSEKSNSLDGMKIVITGTIENYKRNDIKNLIIE 616

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               V++ +S+ TD+++ G+ PGSK EKA++LGVKI+  ++    L++
Sbjct: 617 NNGDVTSSVSKNTDLVLCGEKPGSKKEKAEKLGVKILENQELFEFLKK 664


>gi|227498227|ref|ZP_03928396.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434]
 gi|226832370|gb|EEH64753.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434]
          Length = 827

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 211/821 (25%), Positives = 343/821 (41%), Gaps = 124/821 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            ++AR+    L + +      YY    ++    D+ YDAL R  + +  A+P L     P
Sbjct: 27  PQEARRRWEELAELVERARAAYYDALDAESTTSDAAYDALYRELEDLEAAWPQL---RVP 83

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG    +   VTH+    SL+ ++++E+++++  R+        D S+  T E
Sbjct: 84  HSPTRSVGGGRAQAFSPVTHAERMYSLQDVFSLEEVQEWAERVCADLG-VADASLPMTAE 142

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            KIDG  + + Y  G    AA RGDG +GEDV+A +R I ++P  LS + +P +IEVRGE
Sbjct: 143 VKIDGLAVALTYTDGVLTRAATRGDGTTGEDVTANVRTIASVPHRLSGDQVPSLIEVRGE 202

Query: 191 VYISKNDFLALNDEMIAVGR------------------------KPYANPRNAASGILRR 226
           VY     F   N E                              + +ANPRNAA+G LR+
Sbjct: 203 VYFPVEAFARFNRERQEDNARREARNRALEEQGGGKRVRKEAMLQVFANPRNAAAGSLRQ 262

Query: 227 LNPT-DITRYLNFFVHGLGK----TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281
            +P    +R L F  HG+G       E     Q+E  + +   G PV+            
Sbjct: 263 KDPAITASRPLAFIAHGIGAYTPAPGEQLPALQHEWYELLAGWGLPVSPYNALVVGRAER 322

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
            +Y       R  L ++IDG+V+K+D    Q +LG  +R PRW  ++K+  ++  TRLLD
Sbjct: 323 EAYIERYAEHRHDLIHEIDGIVFKIDARDQQGRLGYTSRVPRWATAYKYPPEEVHTRLLD 382

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           ID+Q+GRTG +TP   +EPV + G+ +  ATLHN + +             + +R+GD V
Sbjct: 383 IDVQVGRTGRVTPFGIMEPVLVAGSTVARATLHNAEEVTR-----------KGVRIGDLV 431

Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
           ++++AG+VIP++V  +V  R    + F  P+ CP C + +         +     RC   
Sbjct: 432 VLRKAGDVIPEIVGPVVEARDGSERVFVMPAACPSCGTPL-----APAKEGDVDLRCPNT 486

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS-----------------EDPAFSI 504
            +C AQ  ER+ H  SR A ++EGLG +      +                  E     I
Sbjct: 487 RSCPAQVTERVAHVGSRGALDVEGLGDEAAAALTQPDAGQEEALAALAAGRYLETERGRI 546

Query: 505 RI-PADIFTLQRRQQTSTTKI--------------ENILGFGDVSVTNLYDSI--NKRRN 547
           R+   D+ +L   Q+    +                   G  ++S  +L +       R 
Sbjct: 547 RLRTKDLESLAPAQRLGLARTYLEEHGIGEQEPVLTGEAGLFELSEDDLAEVFVYQSVRR 606

Query: 548 ISL----ERFIFSLGIRHV-------------GAEIARSLAK-------------YYLSY 577
                   R       +               G      LA+               LS 
Sbjct: 607 RGEATGDWRLARFFWTKQTYTPDGDVKKASVPGKNATAVLAQLEAAKAQPLWRVLVALSV 666

Query: 578 QNFAQEINNIIAHNNDDWLSLIR--------VPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           ++        +A       +L +        V  VG  IA A  E+ +   +   ++   
Sbjct: 667 RHVGPTAARALAARFGSLEALRQASLDELSQVDGVGPTIAAAWQEWLEVDWHREILDRWA 726

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
                +           +    +V TGTL+   R  A+E +   G   +  +S++T  ++
Sbjct: 727 AAGVRTQDEVTTTAPQTLAGLSVVVTGTLEHFTREGAKEAIVARGGKAAGSVSKRTSYVV 786

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
           VG N GSK  KA++LGV +++EE F  LL+         +D
Sbjct: 787 VGANAGSKETKARELGVPVLDEEGFRALLEHGPAADPEQED 827


>gi|297183498|gb|ADI19628.1| NAD-dependent DNA ligase (contains brct domain type II) [uncultured
           delta proteobacterium HF0770_45N15]
          Length = 655

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 206/701 (29%), Positives = 353/701 (50%), Gaps = 55/701 (7%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L Q +   +  YY      + D EYD L  + +A+     +   +     PL +    
Sbjct: 5   TDLVQRVHDLNHDYY-CDVATVPDVEYDGLVSQLNALEAQVGESLANV---SPLLQFAAN 60

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
              +     H+IP LSL  +++ +++ ++   + +       +++ +T E KIDG  I++
Sbjct: 61  QQEAFPSRRHAIPMLSLGNLYSEQEILEWDENLRKPLG---VSTLSYTCELKIDGLAISL 117

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            YEKG+   A  RGDG +G++V+A +R IP +P  L    P  +EVRGEV++SK+ F  L
Sbjct: 118 IYEKGRLATAVTRGDGTAGDEVTANLRTIPELPVALPE--PLDLEVRGEVFLSKDAFEKL 175

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQK 260
           N          + NPRNAA+G LR L+ ++++R  L  FV+     S I        L +
Sbjct: 176 NQRRATQNEPLFRNPRNAAAGTLRTLDTSEVSRRRLGVFVYACV--SGIETPQHSAALDQ 233

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +  L FPVN     A +   ++ Y  +  +  S LPY +DG+V KVD +S Q+QLG  A+
Sbjct: 234 LVKLDFPVNPERHFAASITEVLEYCRKWGTHHSELPYAVDGVVLKVDAYSTQRQLGVTAK 293

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           SPRW ++ KF+ +QA +R+  I++ +GRTG++TP+A ++PV + G ++  ATLHN + ++
Sbjct: 294 SPRWAVACKFSTEQAESRIRGIELGVGRTGVITPIALIDPVELNGTMVGRATLHNFEQVR 353

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            L           D+ +GD V +++ GE+IPK+V +  + R P+A P   P  CP C  +
Sbjct: 354 NL-----------DLHLGDLVTLEKGGEIIPKIVSVARSARFPNALPILPPETCPACDDK 402

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           V  +             CT    C  Q  ER+ HF SR A ++E +G   +    +    
Sbjct: 403 VSHEDGE------VDWLCTNP-DCPDQVRERVLHFCSRRALDVETIGPALVVQLLER--- 452

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              +R PAD+F L     +   ++      G  S  N+   + + ++  L   +  LGI 
Sbjct: 453 -GLVRTPADLFRLNVEALSQLERM------GKKSAENVVSGLERSKHCRLAALLHGLGIP 505

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           +VG + AR LA+ + + Q      +            L+ +  +G +IA ++  F+ + R
Sbjct: 506 NVGEKTARLLARRFGTLQTLQTVQHE----------QLLAIDEIGPVIANSVASFFADSR 555

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
               V+ LL               +     K +V TG L +  R   ++ + + GA +++
Sbjct: 556 QQALVDDLLAVGVCPQEEAILEADNPHFSGKMVVLTGALSE-ARDVWKQRLEEAGANITS 614

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE---EQFLFL 717
            +S+KTD+++ G+N GSKLEKA + G+++++E   + +L L
Sbjct: 615 AVSKKTDLVLAGENAGSKLEKAHKFGIQVIDETTAQTWLNL 655


>gi|325002847|ref|ZP_08123959.1| NAD-dependent DNA ligase LigA [Pseudonocardia sp. P1]
          Length = 615

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 184/604 (30%), Positives = 298/604 (49%), Gaps = 32/604 (5%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + + + EQAR+  + L  E++ H   YY    P++ D ++D L      +  A P LA  
Sbjct: 1   MSSQTDEQARERHAQLAAEVADHQFRYYVLDAPVVSDGQFDELWHELLGLEDAHPGLA-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P  P  K+GG  +       H    LSL+  ++ +DLR +  R+ R        ++ +
Sbjct: 59  -TPQSPTQKVGGTFSTEFTAHDHLERMLSLDNAFSADDLRTWQERVTREVG----ENLHY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEI 184
             E KIDG  + + YE G    A  RGDG +GED++  +R +  +P  L+      +P +
Sbjct: 114 LCELKIDGLAVNLLYEGGTLTRALTRGDGRTGEDITLNMRTLGEVPVTLTGTDEFPVPAL 173

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGEVY    DF  LN  ++  G++P+ANPRN A+G LR+ +P    +R L    HG+
Sbjct: 174 VEVRGEVYFRLEDFDRLNASLVEAGKEPFANPRNTAAGSLRQKDPRVTASRNLRLICHGI 233

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+        Q +    +   G P++   R       +V +       R  + ++IDG+V
Sbjct: 234 GRRDGFTPVTQSQAYDALVAWGLPISPRTRVLRGIEKVVEFVEHWGEHRHDVEHEIDGVV 293

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVDE +LQ++LG  +R PRW I++K+  +QA+TRLLDI + +GRTG +TP A +EPV +
Sbjct: 294 VKVDEVALQRRLGATSRFPRWAIAYKYPPEQATTRLLDIRVNVGRTGRVTPFAVMEPVKV 353

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  ATLHN D ++            + + +GDRV++++AG+VIP+V+  + + R  
Sbjct: 354 AGSTVEMATLHNADEVRR-----------KGVLIGDRVVIRKAGDVIPEVLGPVTDVRDG 402

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + F  P+ CP C + +V+             RC    +C AQ  ERL H   R +F+I
Sbjct: 403 SERAFVMPTHCPECGTALVQQKAG-----DVDRRCPNARSCPAQLRERLFHVAGRGSFDI 457

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG +       S      +    D+F+L   +   T    N  G   V+   L  ++ 
Sbjct: 458 EGLGYEAAVALLTS----GVLTDEGDVFSLTEDELLRTDLFRNQKGELTVNGRKLLTNLE 513

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             ++  L R +  L IRHVG   A++LA+ + S +   Q             + ++    
Sbjct: 514 AAKDRPLWRVLVGLSIRHVGPTAAQALAREFGSMEALEQAAARAKEDTEAAGVEIVSDGS 573

Query: 604 VGDI 607
            G+ 
Sbjct: 574 AGEE 577


>gi|227485017|ref|ZP_03915333.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172]
 gi|227237014|gb|EEI87029.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172]
          Length = 667

 Score =  608 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 193/709 (27%), Positives = 344/709 (48%), Gaps = 59/709 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           EL  + + I+  D  YY   KP++ D EYD L  +   +             N P N++G
Sbjct: 6   ELKKIIERINELDYHYYTLDKPLVSDGEYDKLYNQLIKLQKN----LAYVPENSPTNRVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPK 133
           G++     K  H    LS +K  + ++++++I R  R  +  +        ++ F +E K
Sbjct: 62  GQILDKFEKHYHLTRLLSQDKAQSYDEIKEWIERCKRLKEAYESTSGERLPNLEFVMEYK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + YE G    AA RG+G  GE V A    I +IP  +      ++E++GE  +
Sbjct: 122 FDGLTINLTYEDGILKTAATRGNGIVGEQVKAQAETIRSIPFTIKEK--SLLEIQGEALM 179

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
             ++    N E          N RNAA+G +R L+  +   R+L  + + +   S I  K
Sbjct: 180 PLSELDRYNKE----NETQLKNARNAAAGAIRNLDTKETAKRHLTAYFYAVPTNS-INFK 234

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            + EML  ++ +   V+   ++  +   I++    +K  R TL    DG+V K+++   Q
Sbjct: 235 NEEEMLSFLKEMKLNVHPYHKKVTSLDEIINELERIKEERKTLDVLTDGVVIKINDKKTQ 294

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + PRW I+ KF  ++ +T+LLD+   +GRTG +TP A LEPV+  G  ++ AT
Sbjct: 295 EVLGVTEKFPRWSIAFKFEPEEFTTKLLDVIWNVGRTGKVTPSAILEPVDFSGVTVSRAT 354

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N D I+            + +++G  V ++R+ +VIP+++ ++ +E  P       P+
Sbjct: 355 LNNYDDIER-----------KKVKIGSDVFIRRSNDVIPEILGVV-DENQPGTIKIEKPT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S ++++             C   ++C+ Q L R++H+ SR+A +IEGL ++ + 
Sbjct: 403 HCPYCHSELIQEKVHIV--------CPNSISCTPQLLARMEHYASRNAMDIEGLSEKTIG 454

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +      SI+   DI+ L   +     +      FG     NL  SI+  +N  L+ 
Sbjct: 455 QLIEE----LSIKEIYDIYDLTYDELIKLER------FGHKKAKNLLASIDNSKNRDLDA 504

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI+++GI +VG   AR LA  + S+        + +          I +  +G+I  + I
Sbjct: 505 FIYAIGIPNVGERTARDLANKFKSFDKLRNATVDEL----------IEIDDIGEITGENI 554

Query: 613 VEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           VEF+ +   + +++  L K ++ +  R   + S +++    V TGT+    R   ++ + 
Sbjct: 555 VEFFHDKNIVESIDILLSKGINLNNPRENTSDSKKLDGINFVITGTIDGYNRDDIKKMLE 614

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             GA V   +S+ TDI++ G+  GSK +KA +L V+I  +E+    L +
Sbjct: 615 DNGANVRGSVSKNTDIVLAGEKAGSKKDKAIELNVEIYEDEKLYSFLSE 663


>gi|302670775|ref|YP_003830735.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316]
 gi|302395248|gb|ADL34153.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316]
          Length = 675

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 205/719 (28%), Positives = 343/719 (47%), Gaps = 63/719 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+ R    +L  EI +H D YY   +P I D EYD L  R   +   +P+L  +   + P
Sbjct: 6   EEIRNNYDALVSEIKHHMDLYYNQDEPEISDYEYDQLMIRLKKMESEYPELVSN---DSP 62

Query: 75  LNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              +GG     +  K+TH++P LS+E ++  E + +++T+++            F+ E K
Sbjct: 63  SQIVGGVAKREAGVKITHNVPMLSIEDVFTTEAVSEWVTKVHAL-----HPGALFSAEIK 117

Query: 134 IDGTMITIRYEKG------KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           IDG  +++RY K           A  RGDG  GEDV+A    IP + RV+ L   + +E+
Sbjct: 118 IDGLSMSLRYRKSPEDDKLHLELAETRGDGLIGEDVTANALMIPDVKRVIDLPY-DYLEL 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEVY+S  +F   N+E    G+K  ANPRN A+G LR+L+PT    R L  FV  +   
Sbjct: 177 RGEVYMSHENFEKFNEEQEKSGKKIAANPRNLAAGTLRQLDPTITRDRGLRMFVFNIQDG 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +   +   + L+ +   G PV    +Q +    +++   E  ++R  L YD+DG V KV
Sbjct: 237 PQELMESHCKGLEILANAGVPVV-FHKQCSDTQEVIAAITEFGNMRENLEYDLDGAVIKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL------EP 360
           D  + +      ++     I++K+  ++    + +I + +GRTG LT           +P
Sbjct: 296 DHTAWRDDFPAGSKYSSGHIAYKYPPEERVVVMDEIIVDVGRTGKLTFTGSFHDRETGKP 355

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
             + G  ++ ATLHN+DYI  +            I +G    + ++GE+IPK+   +   
Sbjct: 356 ARLCGTSVSRATLHNQDYINEMQ-----------IGIGGEYKLFKSGEIIPKLNGCVKAP 404

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
                  +  P  CP+C S +VR+ +       A  RC     C AQ    + +F SRDA
Sbjct: 405 ----EIVYKAPEHCPVCGSLLVREED------TADIRCINP-TCPAQVTRTIAYFTSRDA 453

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NI GLG   +D           ++  ADI+TL R +     K   I+G    +   L  
Sbjct: 454 MNIMGLGDTLVDALVSE----GYLKTYADIYTLGRHRDELIEK--GIIGKV-KNTDKLLG 506

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            I K +     R +  L IR+VG   AR + K++          ++++          ++
Sbjct: 507 EIEKSKENDPVRLLTGLAIRNVGKSTAREIMKHF----------DDLMELTKVTREGFLQ 556

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +P +G+  A  + EF+ +  N+  +E +             + S ++    +V TGTL  
Sbjct: 557 IPDIGETTANDLYEFFHDEHNLQILEQMNSLGLNMKVVESNDSSDKLSGMTIVVTGTLPT 616

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A+E + + G   S  +S+KT +++ G+  GSKL KA  LG+K++NE +FL +++
Sbjct: 617 LGRKEAEELIVKNGGKASGSVSKKTSLVLAGEAAGSKLTKANDLGIKVINEAEFLEMIK 675


>gi|224826983|ref|ZP_03700081.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002]
 gi|224600816|gb|EEG07001.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002]
          Length = 815

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 222/716 (31%), Positives = 364/716 (50%), Gaps = 79/716 (11%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQA + ++ L   ++ +   YY+  +P + D EYD L R  +A+  A P+L R+   + P
Sbjct: 12  EQAVQRIAELVPLLNRYSREYYERDEPTVPDVEYDRLYRELEALEAAHPELRRA---DSP 68

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKKDDN 124
             ++GG        VTH++P LSL   ++            +L +F  R+ +        
Sbjct: 69  TLRVGGAPLAEFSSVTHAVPMLSLNNAFSDLDAADFEQRHAELIQFDERVRKALG---GA 125

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPE 183
            + + ++PK DG  +++ Y  G  V  A RGDG SGE+V+  +R +  IP  L++ + P 
Sbjct: 126 EVEYAVQPKFDGLAVSLLYRDGVLVQGATRGDGFSGENVTENLRTVRAIPLRLTIEHPPA 185

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHG 242
           ++EVRGEV + K DF  LN E  A G K +ANPRNAA+G LR+L+     R  L+FF + 
Sbjct: 186 LLEVRGEVLMLKRDFEQLNAEQAARGDKTFANPRNAAAGSLRQLDSRITARRRLSFFAYA 245

Query: 243 LGKTSEI-FAKGQYEMLQKMRCLGFPVNN--GVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           + +     +       L  +  LG P+             G+ +YY  +   R++LPYDI
Sbjct: 246 IAQVEGADWPVSHQAELDWLHRLGIPLVPAELRPVVRGVAGLAAYYEAILRQRASLPYDI 305

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV++ + Q+ LG  +R+PRW I+HKF  ++A T +  I+ Q+GRTG +TPVARL+
Sbjct: 306 DGVVYKVNDRAQQEALGFVSRAPRWAIAHKFPAEEALTLVEAIEEQVGRTGAITPVARLK 365

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHNED ++            +D+RVGD V+V+RAG+VIP+VV +++ 
Sbjct: 366 PVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLE 414

Query: 420 ERH---------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464
            R                P    +  P+ CP+C S VVR+         A  RC+GGL C
Sbjct: 415 RRPMRPVAGGDLFSSGDEPQHPAYRLPTACPVCGSHVVREEGE------AIARCSGGLIC 468

Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-K 523
            AQ+ + ++HF  R   +I+GLG++ +D   +       +   AD++TLQ         +
Sbjct: 469 RAQRSQAIQHFAGRRMMDIDGLGERYIDNLVE----FGYVNSVADLYTLQLADLLEMKHR 524

Query: 524 IENILGFGD----------VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            +   G                 NL  +I   R  +L R +F+LGIRHVG   A++LA +
Sbjct: 525 ADERDGVVPETVQKGQIATKWAENLLAAIAASRRPTLARLLFALGIRHVGESTAKTLADW 584

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
               +   +    ++A   D          +G ++A+AI +F+    N   +EALL+ V 
Sbjct: 585 LGRLELIRRAPAPLLAALPD----------IGGVVAEAIADFFAEDNNETVLEALLRHVQ 634

Query: 634 PSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           P         ++  ++   L+    + ++   ++Q+   Q+  + +   S + +++
Sbjct: 635 PGDEHAPSPKLAERLQPAALLARLGIPRLTELRSQQLAGQIAGLAALAASERRELM 690



 Score =  140 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 94/258 (36%), Gaps = 28/258 (10%)

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A  I  +G+               IR                        F + +   + 
Sbjct: 567 ALGIRHVGESTAKTLADWLGRLELIRRAPAPLLAALPDIGGVVAEAIADFFAEDNNETVL 626

Query: 540 DSI--------------NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           +++                   +     +  LGI  +    ++ LA           +I 
Sbjct: 627 EALLRHVQPGDEHAPSPKLAERLQPAALLARLGIPRLTELRSQQLA----------GQIA 676

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
            + A    +   L+++ L  D+   A+ ++   P     +  L   V   +       SS
Sbjct: 677 GLAALAASERRELMQLDLPADVF-NALADWLDEPGRRAELSQLASLVDSILADLPTQPSS 735

Query: 646 E---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
               +E K LV TGTL  + R +A+E +   G  V+  +S+KT  ++ G+  GSKL KA+
Sbjct: 736 ANLLLEGKTLVLTGTLPTLSRDQAKELIEAAGGKVAGSVSKKTHYVVAGEAAGSKLAKAE 795

Query: 703 QLGVKIMNEEQFLFLLQQ 720
           +LGV +++E   L LL Q
Sbjct: 796 ELGVPVLDEAGLLALLDQ 813


>gi|149928191|ref|ZP_01916436.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
 gi|149823082|gb|EDM82322.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
          Length = 597

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 216/572 (37%), Positives = 324/572 (56%), Gaps = 34/572 (5%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L   ++  +  YY    P + DSEYD + R    I +  P+L ++   + P  ++GG
Sbjct: 27  MRRLIDLLNRWEYAYYVLDAPEVPDSEYDKVYRSLQQIENNHPELIQN---DSPTQRVGG 83

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +      +V H +P LSL   +   D+  F  R+        D +I + ++PK DG  I+
Sbjct: 84  KPADGFEQVRHRVPMLSLGNAFEDSDVLAFDRRVKELADLPIDTTIAYAVDPKFDGLAIS 143

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFL 199
           I Y  G F  A  RGDG  GEDVSA ++ I ++P  L  ++ P  +E+RGE++++K DFL
Sbjct: 144 IHYTNGMFDQAITRGDGTVGEDVSANVKTIRSLPLKLKGSVVPAHLEIRGEIFMTKKDFL 203

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF--AKGQYE 256
            +N     +G K +ANPRNAA+G +R+L+P     R L F+ +G     E     K Q  
Sbjct: 204 QMNQRQAELGLKVFANPRNAAAGTIRQLDPKVAASRPLRFYCYGAALEREQLRELKSQSA 263

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           M++ +  LG PV+   + A    G++S+Y  +   RSTLP++IDG+VYKVD F LQ QLG
Sbjct: 264 MMKWLAALGLPVSELSQTATGAEGLLSFYRSVGGRRSTLPFEIDGVVYKVDSFDLQDQLG 323

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++PR+ ++HKF   +  +RLL+I++Q+GRTG +TPVA+LEPV +GG ++++ATLHN 
Sbjct: 324 YVAKAPRFAVAHKFPPDEVLSRLLNIEVQVGRTGSITPVAKLEPVKVGGVVVSSATLHNL 383

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +D+RVGD+VLV+RAG+VIP+V+    N+R P +  F  P+ CPI
Sbjct: 384 DEIQR-----------KDLRVGDQVLVRRAGDVIPEVLPFPGNQRSPVSSAFVMPTHCPI 432

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V ++         AA RCTGGL C AQ  + + HF  R A +IEGLG + ++    
Sbjct: 433 CNSLVRKEEGE------AAFRCTGGLVCKAQLTQSIIHFAHRRAIDIEGLGSKLVEVLVD 486

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     ++ PAD+F L+        ++      GD S  NL DSI+K +  +  RF+F 
Sbjct: 487 KE----WVKTPADLFRLEFDALVQLERM------GDKSARNLLDSIDKAKQTTFGRFLFG 536

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           LGIRHVG   AR LA Y+ + +         +
Sbjct: 537 LGIRHVGEATARDLAAYFKNVERLMNASEEEL 568


>gi|226327977|ref|ZP_03803495.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198]
 gi|225203681|gb|EEG86035.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198]
          Length = 505

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 194/525 (36%), Positives = 299/525 (56%), Gaps = 36/525 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L   + +H+  Y+    P I D+EYD L     A+   +P+L  S   + P  +
Sbjct: 6   QQKIDKLRVTLRHHEYLYHVMDAPEIPDAEYDRLMNELKALEAEYPELITS---DSPTQR 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +  +V H IP LSL+  ++      F  R+    +  +   I F  E K+DG 
Sbjct: 63  VGALPLTAFEQVRHEIPMLSLDNAFDETSYLAFDKRLRDRLKNSE--EITFCCELKLDGL 120

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            +++ YE G  V AA RGDG +GE+++  +R I  IP  L   NIP  IE+RGEV++++ 
Sbjct: 121 AVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLRLYGENIPTRIEIRGEVFMNEK 180

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQ 254
            F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G           
Sbjct: 181 GFEYLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPTSH 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y+ LQ+ +  G PV++ V+       ++ +Y+ ++ IR  L +DIDG+V KVD+ +LQ++
Sbjct: 241 YKRLQQFKKWGLPVSDAVKLCTGSKAVLDFYHHVEEIRPNLGFDIDGVVIKVDDIALQEE 300

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++NATLH
Sbjct: 301 LGFVSRAPRWAIAYKFQAQEQMTIIKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLH 360

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            IR+GD V+++RAG+VIP+VV +I  +R  DAQ   FP+ C
Sbjct: 361 NADEIERL-----------GIRIGDTVVIRRAGDVIPQVVSVIEEKRPADAQEIIFPTQC 409

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PICQS + R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + +D  
Sbjct: 410 PICQSDIERIEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQL 463

Query: 495 FKSEDPAFSIRIPADI-FTLQRRQQTSTTKIENILGFGDVSVTNL 538
            + E     ++ PAD+ F L  +  +   ++      G+ S   +
Sbjct: 464 VEKE----YVKTPADLFFRLDEKILSGLERM------GEKSAKKI 498


>gi|15894478|ref|NP_347827.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824]
 gi|81530636|sp|Q97JS8|DNLJ1_CLOAB RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|15024117|gb|AAK79167.1|AE007633_11 DNA ligase (NAD dependent), LigA [Clostridium acetobutylicum ATCC
           824]
 gi|325508609|gb|ADZ20245.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018]
          Length = 663

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 198/708 (27%), Positives = 347/708 (49%), Gaps = 56/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L ++++ +   YY    PI+ D EYD +      +     +     +PN P  ++
Sbjct: 2   KLIEDLIEKLNKYSYSYYVLDNPIVADKEYDIMYDELKRLE----EETEYINPNSPTQRV 57

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           G  +     K  H     SL+K    ++++ F+ +  +F ++ +        S  F +  
Sbjct: 58  GDIILDKFEKTHHKNKLWSLDKAQKKDEVKAFVNKCVKFVEQYNLTHSEKLPSPQFVVTQ 117

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  I   Y + + + +A RG G  GED++   + I  +P   ++N    I+V GE  
Sbjct: 118 KLDGLTINCSYNESRLIKSATRGTGEIGEDITEQSKTILNLPN--AINYSGEIDVHGEAL 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251
           ++KN     N   + V   P  N RN A+G LR LN  +  R  L    + L  T +   
Sbjct: 176 MTKNALEQYNSN-LKVNETPLKNLRNGAAGALRNLNIKETARRKLVAQFYDLSYTDKKLK 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K   E+L  ++  GF +       N F  I    + +  +RS+L YDIDG+V ++++   
Sbjct: 235 K-YSEILLFLKSQGFNITEYN-ICNNFDEINQAIDNIGEVRSSLQYDIDGVVIRLNDIET 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + +G   + P++ I++KF  K+ +T+L+D++  +GR+G + P A LEPV + G ++  A
Sbjct: 293 SRLMGYTIKCPKYAIAYKFKAKETTTKLIDVEWNVGRSGRINPTAILEPVELAGVIVKRA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N D IK                 G RV ++R+ +VIP+++ +       + +    P
Sbjct: 353 TLNNMDDIKRKKIKK-----------GARVFLRRSNDVIPEIMGVTEET-EGETKEIEAP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S +V++             C   L+C  Q ++ + HF SR A NIEG  ++  
Sbjct: 401 TICPYCGSEIVKE--------GVHLFCENTLSCKPQMVKSIVHFASRKAMNIEGFSEKTA 452

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+      +I+  +D++ + + +  S  K      F D   +NL ++I K +   L+
Sbjct: 453 EQLFEK----LNIKSISDLYRITKEELMSLDK------FKDKKASNLINAIEKSKECDLD 502

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            F++SLGI +VG + A  L K + S++N  +            +  LI V  +G I+A++
Sbjct: 503 SFVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYFELILVQDIGSIVAKS 552

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IV+F++  +   ++  L K          +   S   +K +V TG+LQ   R + +E + 
Sbjct: 553 IVDFFKQEKIEKSLNELFKLGVKPSYEESEVSESVFNDKTVVATGSLQNYSRTEIKEKLE 612

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+KTD +I G+N GSK +KA  LGVKI+ EE+F  L++
Sbjct: 613 SLGAKVAGSVSKKTDYVIAGENAGSKYDKAVALGVKILTEEKFEELIE 660


>gi|219681449|ref|YP_002467834.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471124|ref|ZP_05635123.1| DNA ligase (NAD+) [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|254781271|sp|B8D8M5|DNLJ_BUCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219624292|gb|ACL30447.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 675

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 223/710 (31%), Positives = 370/710 (52%), Gaps = 50/710 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++  L + +  ++  Y+  ++ II D+EYD L R+   +     +L  S   + P  K
Sbjct: 5   KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKHKELIPS---DSPTQK 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K+ H  P LSLE  +++     F  RI +     ++  + F  E K+DG 
Sbjct: 62  VGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSI--HNNEPLSFCCELKLDGV 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I+I YE+G FV AA RGDG  GE++++  R I +IP  L  ++IP+ +E+RGEV++ K+
Sbjct: 120 AISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVFMLKS 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT--SEIFAKG 253
           +F+ LN +      K ++NPRNAA+G LR ++P     R L F  HG      +      
Sbjct: 180 NFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDPNITAERKLIFSCHGCDFFVKTNKELTT 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+ L K    G PVN  +   ++   I+ +Y ++   R+ L +DIDG+V KV+   LQK
Sbjct: 240 HYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVIKVNSLELQK 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G   +SPRW I+ KF+ K+  T L D+  Q+GRTG++TPVA   PV I G +I+ A+L
Sbjct: 300 KIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYISGVMISKASL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN++ I+ L+           +   D + + R+G+VIP+++++I   R  +A+   FPSF
Sbjct: 360 HNKNEIERLN-----------LHFNDTITICRSGDVIPRLLNVIEIRRCDNAKKIIFPSF 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C + ++ ++  K        RC  GL C AQ+ + L HF S+ +  + GLG + ++ 
Sbjct: 409 CPVCNTELLENIEEK------LIRCHSGLTCDAQKKQALYHFFSKKSLYVVGLGPKIINE 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       ++ P D F L+            +   G      + +SI K +  +L+ F
Sbjct: 463 LVEK----GLVKNPIDFFYLKDIDLI------QLKNVGKRKSIKIINSIKKCKKTTLKCF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGI  VG  +A  +A Y++                N + L L  +  VG II+  I 
Sbjct: 513 IYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGVGKIISNNIF 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++    N   V  L+K+    +   E +      +   NKK+V TG  +   R + +  
Sbjct: 563 NYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKSFSRIELKTI 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA +S  +SRKTD +I G+N GSK  +A+ L VKI+N+E+   L++
Sbjct: 623 LLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLIR 672


>gi|255521025|ref|ZP_05388262.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-175]
          Length = 550

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 205/583 (35%), Positives = 308/583 (52%), Gaps = 46/583 (7%)

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F  LN+  
Sbjct: 4   GKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRSFQKLNEIR 61

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
              G+  +ANPRNAA+G LR+L+      R L+ F++ +    E+  +     L  +  L
Sbjct: 62  EEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLETL 121

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G   +SPRW
Sbjct: 122 GLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGNTVKSPRW 181

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNED I     
Sbjct: 182 SIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNEDLIT---- 237

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP C S +VR 
Sbjct: 238 -------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPACDSELVRL 290

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                     A RC     C AQ  E L HFVSR+A NI+GLG++ +   F        I
Sbjct: 291 EEE------VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQH----LI 339

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           +  AD+F L + +     ++      G+ SVTNL  SI   +  SLE+ +F LGIRHVGA
Sbjct: 340 KDVADLFFLSKEKLLELERM------GEKSVTNLLASIQASKQNSLEKLLFGLGIRHVGA 393

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
           + A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++ N      
Sbjct: 394 KAAKSLAIHFDTMDNLKVA----------DKETLTSINDIGEKMADSIVTYFANEEVHDL 443

Query: 625 VEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           +E L +                        K +V TG L+K+ R+ A+  +  LG  VS 
Sbjct: 444 LEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIESLGGNVSG 503

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 504 SVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 546


>gi|311086964|gb|ADP67044.1| DNA ligase (NAD+) [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 678

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 223/712 (31%), Positives = 372/712 (52%), Gaps = 50/712 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++  L + +  ++  Y+  ++ II D+EYD L R+   +     +L  S   + P  K
Sbjct: 5   KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPS---DSPTQK 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K+ H  P LSLE  +++     F  RI +     ++  + F  E K+DG 
Sbjct: 62  VGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSI--HNNEPLSFCCELKLDGV 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I+I YE+G FV AA RGDG  GE++++  R I +IP  L  ++IP+ +E+RGEV++ K+
Sbjct: 120 AISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVFMLKS 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT--SEIFAKG 253
           +F+ LN +      K ++NPRNAA+G LR ++P     R L F  HG      +      
Sbjct: 180 NFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDPNITAERKLIFSCHGCDFFVKTNKELTT 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+ L K    G PVN  +   ++   I+ +Y ++   R+ L +DIDG+V KV+   LQK
Sbjct: 240 HYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVIKVNSLELQK 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G   +SPRW I+ KF+ K+  T L D+  Q+GRTG++TPVA   PV I G +I+ A+L
Sbjct: 300 KIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYISGVMISKASL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN++ I+ L+           +   D + + R+G+VIP+++++I   R  +A+   FPSF
Sbjct: 360 HNKNEIERLN-----------LHFNDTITICRSGDVIPRLLNVIEIRRCDNAKKIIFPSF 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C + ++ ++  K        RC  GL C AQ+ + L HF S+ +  + GLG + ++ 
Sbjct: 409 CPVCNTELLENIEEK------LIRCHSGLTCDAQKKQALYHFFSKKSLYVVGLGPKIINE 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       ++ P D F L+            +   G      + +SI K +  +L+ F
Sbjct: 463 LVEK----GLVKNPIDFFYLKDIDLI------QLKNVGKRKSIKIINSIKKCKKTTLKCF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGI  VG  +A  +A Y++                N + L L  +  VG II+  I 
Sbjct: 513 IYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGVGKIISNNIF 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++    N   V  L+K+    +   E +      +   NKK+V TG  +   R + +  
Sbjct: 563 NYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKSFSRIELKTI 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +  LGA +S  +SRKTD +I G+N GSK  +A+ L VKI+N+E+   L++++
Sbjct: 623 LLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLIRKF 674


>gi|47169437|pdb|1V9P|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase
 gi|47169438|pdb|1V9P|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase
          Length = 584

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 200/571 (35%), Positives = 315/571 (55%), Gaps = 39/571 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+AR+ ++ L   I YH+  YY  + P I D+EYD L R    +   FP+    + P
Sbjct: 1   MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEF---KSP 57

Query: 72  NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G      +   V H     SL+  +  E++  F  R+ R   +K      +T+
Sbjct: 58  DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALGRK--RPFLYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG  GE+V+  +  IPTIPR L   +P+ +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLK-GVPDRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SE 248
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P     R L    + LG    E
Sbjct: 175 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLEE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K QYE+L  ++  GFPV +G  +A    G+   Y    + R  LP++ DG+V K+D+
Sbjct: 235 SGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPFEADGVVVKLDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +L ++LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV I G+ +
Sbjct: 295 LALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  + +P 
Sbjct: 355 SRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +IEGLG+
Sbjct: 404 RWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIEGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       +R  AD++ L++       ++      G+ S  NL   I + ++ 
Sbjct: 455 KLIERLLEK----GLVRDVADLYHLRKEDLLGLERM------GEKSAQNLLRQIEESKHR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
            LER +++LG+  VG  +AR+LA+ + +   
Sbjct: 505 GLERLLYALGLPGVGEVLARNLARRFGTMDR 535


>gi|219682005|ref|YP_002468389.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|254781272|sp|B8D6X9|DNLJ_BUCAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219621738|gb|ACL29894.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|311085811|gb|ADP65893.1| DNA ligase (NAD+) [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086384|gb|ADP66465.1| DNA ligase (NAD+) [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 676

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 223/710 (31%), Positives = 370/710 (52%), Gaps = 50/710 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++  L + +  ++  Y+  ++ II D+EYD L R+   +     +L  S   + P  K
Sbjct: 5   KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPS---DSPTQK 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K+ H  P LSLE  +++     F  RI +     ++  + F  E K+DG 
Sbjct: 62  VGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSI--HNNEPLSFCCELKLDGV 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I+I YE+G FV AA RGDG  GE++++  R I +IP  L  ++IP+ +E+RGEV++ K+
Sbjct: 120 AISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVFMLKS 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT--SEIFAKG 253
           +F+ LN +      K ++NPRNAA+G LR ++P     R L F  HG      +      
Sbjct: 180 NFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDPNITAERKLIFSCHGCDFFVKTNKELTT 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+ L K    G PVN  +   ++   I+ +Y ++   R+ L +DIDG+V KV+   LQK
Sbjct: 240 HYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVIKVNSLELQK 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G   +SPRW I+ KF+ K+  T L D+  Q+GRTG++TPVA   PV I G +I+ A+L
Sbjct: 300 KIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYISGVMISKASL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN++ I+ L+           +   D + + R+G+VIP+++++I   R  +A+   FPSF
Sbjct: 360 HNKNEIERLN-----------LHFNDTITICRSGDVIPRLLNVIEIRRCDNAKKIIFPSF 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C + ++ ++  K        RC  GL C AQ+ + L HF S+ +  + GLG + ++ 
Sbjct: 409 CPVCNTELLENIEEK------LIRCHSGLTCDAQKKQALYHFFSKKSLYVVGLGPKIINE 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       ++ P D F L+            +   G      + +SI K +  +L+ F
Sbjct: 463 LVEK----GLVKNPIDFFYLKDIDLI------QLKNVGKRKSIKIINSIKKCKKTTLKCF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGI  VG  +A  +A Y++                N + L L  +  VG II+  I 
Sbjct: 513 IYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGVGKIISNNIF 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++    N   V  L+K+    +   E +      +   NKK+V TG  +   R + +  
Sbjct: 563 NYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKSFSRIELKTI 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA +S  +SRKTD +I G+N GSK  +A+ L VKI+N+E+   L++
Sbjct: 623 LLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLIR 672


>gi|15616692|ref|NP_239904.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11132251|sp|P57172|DNLJ_BUCAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|25294009|pir||F84937 DNA ligase (NAD) (EC 6.5.1.2) [imported] - Buchnera sp.  (strain
           APS)
 gi|10038755|dbj|BAB12790.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 675

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 223/710 (31%), Positives = 370/710 (52%), Gaps = 50/710 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++  L + +  ++  Y+  ++ II D+EYD L R+   +     +L  S   + P  K
Sbjct: 5   KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPS---DSPTQK 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K+ H  P LSLE  +++     F  RI +     ++  + F  E K+DG 
Sbjct: 62  VGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSI--HNNEPLSFCCELKLDGV 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            I+I YE+G FV AA RGDG  GE++++  R I +IP  L  ++IP+ +E+RGEV++ K+
Sbjct: 120 AISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVFMLKS 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT--SEIFAKG 253
           +F+ LN +      K ++NPRNAA+G LR ++P     R L F  HG      +      
Sbjct: 180 NFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDPNITAERKLIFSCHGCDFFVKTNKELTT 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+ L K    G PVN  +   ++   I+ +Y ++   R+ L +DIDG+V KV+   LQK
Sbjct: 240 HYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVIKVNSLELQK 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G   +SPRW I+ KF+ K+  T L D+  Q+GRTG++TPVA   PV I G +I+ A+L
Sbjct: 300 KIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYISGVMISKASL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN++ I+ L+           +   D + + R+G+VIP+++++I   R  +A+   FPSF
Sbjct: 360 HNKNEIERLN-----------LHFNDTITICRSGDVIPRLLNVIEIRRCDNAKKIIFPSF 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C + ++ ++  K        RC  GL C AQ+ + L HF S+ +  + GLG + ++ 
Sbjct: 409 CPVCNTELLENIEEK------LIRCHSGLTCDAQKKQALYHFFSKKSLYVVGLGPKIINE 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       ++ P D F L+            +   G      + +SI K +  +L+ F
Sbjct: 463 LVEK----GLVKNPIDFFYLKDIDLI------QLKNVGKRKSIKIINSIKKCKKTTLKCF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGI  VG  +A  +A Y++                N + L L  +  VG II+  I 
Sbjct: 513 IYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGVGKIISNNIF 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++    N   V  L+K+    +   E +      +   NKK+V TG  +   R + +  
Sbjct: 563 NYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKSFSRIELKTI 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LGA +S  +SRKTD +I G+N GSK  +A+ L VKI+N+E+   L++
Sbjct: 623 LLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLIR 672


>gi|331695637|ref|YP_004331876.1| DNA ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326950326|gb|AEA24023.1| DNA ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 812

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 184/575 (32%), Positives = 290/575 (50%), Gaps = 32/575 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    + +  R+  ++L  E++ H   YY    P++ D ++D L R   A+   +PDL  
Sbjct: 17  PAPEPAPDADRERHAALATEVADHQFRYYVLDAPVVSDGQFDELWRELVALEERYPDLV- 75

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  K+G           H    LSL+  ++ ++LR +  R+ R         + 
Sbjct: 76  --SPDSPTQKVGSRFATEFAAHDHLERMLSLDNAFSADELRTWAERVGREIGT----DVH 129

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPE 183
           +  E KIDG  + + YE GK V A  RGDG +GEDV+  +R +  +P  L+      +P 
Sbjct: 130 YLCELKIDGLAVNLLYENGKLVRALTRGDGRTGEDVTLNMRTLAEVPEQLTGTAEFPVPA 189

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           ++EVRGEVY    DF ALN  ++  G+ P+ANPRN A+G LR+ +P    +R L    HG
Sbjct: 190 LLEVRGEVYFRLEDFQALNASLVEAGKPPFANPRNTAAGSLRQKDPRVTASRNLRLICHG 249

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           LGK      +   +    +R  G PV+   +       +V++       R  + ++IDG+
Sbjct: 250 LGKREGFNPERLSQAYDALRAWGLPVSGRTKIVQGIDQVVAHVEYWGEHRHDIEHEIDGI 309

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVDE +LQ++LG  +R+PRW I+ K+  ++A+TRLLDI + +GRTG +TP A +EPV 
Sbjct: 310 VVKVDEVALQRRLGATSRAPRWAIAFKYPPEEATTRLLDIRVNVGRTGRVTPFAFMEPVT 369

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ ++ ATLHN D ++            + + +GDRV++++AG+VIP+V+  I++ R 
Sbjct: 370 VAGSTVSLATLHNADEVRR-----------KGVLIGDRVVIRKAGDVIPEVLGPIIDVRD 418

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + F  P+ CP C + +               RC    +C AQ  ERL H   R AF+
Sbjct: 419 GSEREFVMPTHCPECGTELAHQKAG-----DVDIRCPNARSCPAQLRERLFHVAGRGAFD 473

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG +           A  +    D+F L               G    +   L D++
Sbjct: 474 IEGLGYEAATALLN----AGVVADEGDVFALTEEDLLRVDLFRTKAGVLSANGRKLLDNL 529

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
            K ++  L R +  L IRHVG   A++LA+ + S 
Sbjct: 530 EKAKDRPLWRVLVGLSIRHVGPTAAQALAREFGSL 564



 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 59/126 (46%)

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           V  VG  IA A+ +++    +   V          +   + +V   +E   +V TG++  
Sbjct: 679 VEGVGPTIATAVRDWFTVDWHRDVVAKWRAAGVRMVDEVDTSVPRTLEGMSIVVTGSMAG 738

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R +A+E +   G   +  +S+KT  ++ GD PGSK +KA +L V I++E  F  LL  
Sbjct: 739 YSRDEAKEAIAARGGRAAGSVSKKTSFVVAGDAPGSKYDKALELRVPILDEAGFGVLLAD 798

Query: 721 YNTTLR 726
                R
Sbjct: 799 GPEAAR 804


>gi|308375959|ref|ZP_07668156.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007]
 gi|308344705|gb|EFP33556.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007]
          Length = 614

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 183/591 (30%), Positives = 290/591 (49%), Gaps = 33/591 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +  ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L  
Sbjct: 4   PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61

Query: 68  SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +GG         V H    LSL+  +  ++L  +  RI+           
Sbjct: 62  -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIP 182
            +  E KIDG  +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +P
Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241
           E++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P    R  L    H
Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           GLG          ++    +R  G PV+     A    G+    +     R  + ++IDG
Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV
Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN   IK            + + +GD V++++AG+VIP+V+  +V  R
Sbjct: 357 KVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  P+ CP C S +         +  A  RC     C  Q  ER+ H  SR+  
Sbjct: 406 DGSEREFIMPTTCPECGSPL-----APEKEGDADIRCPNARGCPGQLRERVFHVASRNGL 460

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IE LG +      +++     I    ++F L  R    T       G    +   L  +
Sbjct: 461 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 516

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
           ++K +   L R + +L IRHVG   AR+LA  + S    A    + +A   
Sbjct: 517 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQLAAVE 567


>gi|315655583|ref|ZP_07908481.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333]
 gi|315489647|gb|EFU79274.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333]
          Length = 794

 Score =  598 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 199/821 (24%), Positives = 336/821 (40%), Gaps = 131/821 (15%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI-----ILDSEYDALKRRC 55
           MKK+  IP      E A  + + L  +I      YY    P      + D+EYDAL  + 
Sbjct: 1   MKKKTSIP------ESALAQHADLVDQIEAARTDYYDQ-TPETGVTRLSDAEYDALFVQL 53

Query: 56  DAIAHAFPDLARSEDPNGPLNKIGG----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111
             +  A+PDL     P+ P   +GG              H     S++ +++  ++  + 
Sbjct: 54  QLLEAAYPDLV---TPDSPTQTVGGGGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWW 110

Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171
            R+ +     +      + E K+DG  +++ Y  G     A RGDG +GEDV+  ++ I 
Sbjct: 111 ARVEKSL---EGQDFSVSAEVKVDGLAMSLTYLHGALTVGATRGDGFTGEDVTENVKTIA 167

Query: 172 TIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
           T+P  L   N+PE++E+RGEVY+   DF A+N      G K +ANPRNAA+G L++ +P 
Sbjct: 168 TVPVRLSGENVPELVEIRGEVYLPLADFAAMNAIRERDGEKLFANPRNAATGSLKQKDPV 227

Query: 231 DIT-RYLNFFVHGLGKTSEIFA------KGQYEMLQKMRCLGFPVNNGV--------RQA 275
               R L F  HG+G+            + Q +  + +   G                  
Sbjct: 228 QAAKRPLAFLAHGVGEVRWNDPGAAAHLETQEDFYELLESWGLHSVRETPASLGLPLAGM 287

Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
           +T   + +  ++M + R    + IDG+V KVD F+ +  LG  AR+PRW  ++KF  ++ 
Sbjct: 288 HTLAEVHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 347

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            TRLL I++Q+GRTG +TP   +E V + G+ ++ ATLHN   +             +D+
Sbjct: 348 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHNAKEVAR-----------KDV 396

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           R GD V++++AG++IP+++  +++ R      +  P  CP C + +         +    
Sbjct: 397 RPGDTVVLRKAGDIIPEILGPVISLRPAGLPEWVMPDTCPSCGTEL-----GAQKEGDID 451

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI----------- 504
            RC     C AQ  ERL H  SR A +IEGLG++      + E     +           
Sbjct: 452 LRCPNQSGCPAQITERLIHVGSRYALDIEGLGEEGALALTQPEFGRGDVAAALAAGGQCE 511

Query: 505 --------------------------------RIPADIFTLQRRQQTSTTKIENILGFGD 532
                                              A +F L             I G   
Sbjct: 512 LEDGTIVAVPSGEPRSLEAIEDLLPPAQSPVLTSEAGLFALHPEDLRDVMVWREIPGTAG 571

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----------------- 575
                +       +   L +       +  G  +A  + + +                  
Sbjct: 572 RDWQQV--RFFWAKPRPLPKSAQEATGQRFGPPVAGKVVQTFFEQLQAAKSKELWRVLVA 629

Query: 576 ---------SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
                    + +  A++   + A        L  V  VG++IA +I +++  P +   V+
Sbjct: 630 LSIRHLGPVAARTIARQFATMSAIRAASVEQLGEVEGVGEVIAASIHDWFTVPWHQEIVD 689

Query: 627 ALLKEVSPSIGRHEKNVSSEIE------NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           A       + G+ +    + +          +V TG +    R  AQ  V   G   +  
Sbjct: 690 AWEAAGVGAAGQADAVSGTPLALEPTLDGLTVVITGNVPGYTRESAQLAVEARGGKATGS 749

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +S+KTD+++ G   GSKL KAQ LG+ ++    F  LL++ 
Sbjct: 750 VSKKTDLVVAGAGAGSKLAKAQALGIPVIESAGFEALLEKG 790


>gi|323359739|ref|YP_004226135.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037]
 gi|323276110|dbj|BAJ76255.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037]
          Length = 810

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 217/826 (26%), Positives = 347/826 (42%), Gaps = 136/826 (16%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +   +P   LS++ AR E   L Q I+   + YY     ++ D+ YD    R +A+  
Sbjct: 1   MTEHDQLP--DLSLDDARAEAIDLTQRITDAREAYYGRDAELVDDATYDGWMHRLEALER 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L      + P   +G      L  + H+   LSL+ +++ ++LR +  +      +
Sbjct: 59  RHPELQGQ---DSPTLSVGAAEATDLATIEHAERMLSLDNVFSPDELRDWAVKTEAAAGR 115

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-L 179
               ++ +  E KIDG  I++RYE G    AA RGDG  GE V+     +  +PR L   
Sbjct: 116 ----AVHWLSELKIDGLAISLRYENGVLTSAATRGDGRVGEIVTENALRLADVPRELGGE 171

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA------------------------- 214
             P I+EVRGEV+I    F  LN        +  A                         
Sbjct: 172 GHPPIVEVRGEVFIPVAKFENLNRLQGEYRDRAVAEARERHAGRRAGRPFDEEKAEQAAA 231

Query: 215 -------NPRNAASGILRRLNPTDIT----------RYLNFFVHGLGKTSEIFAKGQYEM 257
                  NPRNAASG LR+                   L+ +VHG+G   +     Q E+
Sbjct: 232 RRFPAFANPRNAASGGLRQQIDKKTGLELEAGLARIESLSLYVHGIGAWPDPPVAAQSEI 291

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
              +   G P +   R  ++  G++S+       R  + ++IDG+V KVDE +L  +LG 
Sbjct: 292 YDLLASWGLPTSPYSRVESSIDGVLSFVAHYGEHRHDVEHEIDGVVVKVDELALHDELGA 351

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW I++K+  +Q +T+LLDI + +GRTG  TP A +EP  + G+++  ATLHN+D
Sbjct: 352 TSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFAVMEPAKVAGSVVRQATLHNQD 411

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            +K            + + +GD V++++AG+VIP+V+  +V  R    + F  P+ CP C
Sbjct: 412 VVKV-----------KGVLIGDTVVLRKAGDVIPEVLGPVVELRDGTERAFVMPADCPEC 460

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            + +         +     RC    +C AQ   R++H  SR A +IE LG+       + 
Sbjct: 461 GTPL-----RPAKEGDIDLRCPNARSCPAQVRGRVEHIGSRGALDIEALGEVTAAALTQP 515

Query: 498 EDPAF-SIRIPADIFTLQRRQQTSTT---------------------------------- 522
           E P    +   A +F L   Q                                       
Sbjct: 516 EVPERPPLDTEAGLFDLTVEQLVPIEVVVRDSETGERKVDPETGELVRRAPFQKLGPASY 575

Query: 523 -----------------KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
                            + +          T L   + K +   L R + SL IRHVG  
Sbjct: 576 PPGAENLDPAERRRRGIRKDYREVLPSEQATKLVAELEKAKTKDLWRLLVSLNIRHVGPV 635

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            AR+LA+++ S           +A           V  VG IIA A++++++   +   V
Sbjct: 636 AARALAQWFGSLDAIRAATREELAA----------VEGVGGIIADAVIDWFEVDWHREIV 685

Query: 626 EAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           E                          +    +V TG+L    R  AQE +   G   ++
Sbjct: 686 ETWSRAGVRFSIPGHPGPGAAAAAGGVLAGLTVVATGSLDGYTREGAQEAILAAGGKAAS 745

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            +S+KTD +  G   GSKL KA++LG++I++  QF  L++Q    L
Sbjct: 746 SVSKKTDFVAAGPGAGSKLAKAEELGLRILDAAQFRILVEQGPGAL 791


>gi|262276888|ref|ZP_06054681.1| DNA ligase, NAD-dependent [alpha proteobacterium HIMB114]
 gi|262223991|gb|EEY74450.1| DNA ligase, NAD-dependent [alpha proteobacterium HIMB114]
          Length = 672

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 246/705 (34%), Positives = 390/705 (55%), Gaps = 43/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE    + ++  ++  YY  + P I D+ YD LK++          ++  E        I
Sbjct: 6   KEYQEKKNKLFEYNKFYYDKNSPKIDDATYDRLKKQLIFYEKTN-QISEKEKKVSDT--I 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G   +    KV H+   LSLE  ++ ED+ +F  +I  +   K  +      EPKIDG  
Sbjct: 63  GFSPSKKFSKVKHAESMLSLENAFDQEDIFEFYKKINNYLNFKSSHREELFAEPKIDGIS 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
            +++Y  G  +    RGDG  GED++  +R I  +P+ L       + VRGEVYI K++F
Sbjct: 123 ASLKYVNGYLIQGLSRGDGQFGEDITENLRTIDDVPKRLKKFNSGELIVRGEVYIPKSEF 182

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQYEM 257
             ++D+        +ANPRNAASG LR+ N T+  +  L FF +G    +      Q + 
Sbjct: 183 KNISDK--------FANPRNAASGSLRQKNATNTAKIPLRFFAYGTIFMNHNLQSKQSKF 234

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  ++  GF +N           + + Y ++++ RS L YDIDG+VYKVD F LQ++LG 
Sbjct: 235 LDFLKLEGFKINPLGIIIKDEKDLFANYTKIENKRSELDYDIDGIVYKVDNFKLQQRLGN 294

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
              SPRW I+HKF+ ++  +++ +I+IQ+GRTG LTPVA++ P+NIGG +++NATLHNED
Sbjct: 295 LTNSPRWAIAHKFSAERGISKIKNIEIQVGRTGALTPVAKINPINIGGVIVSNATLHNED 354

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD ++V+RAG+VIP+VV++  ++R   ++ F FP  CP C
Sbjct: 355 EIER-----------KDIRIGDTIVVQRAGDVIPQVVEVDKSKRDKSSKKFIFPKKCP-C 402

Query: 438 QSRVVRDLNPKTGKLVAAHRCT-GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
               +++ N  T K  A  RC   G  C+    E++KH+VS+DA NIEGLGK+ ++ F+ 
Sbjct: 403 GFETIKEFNKLTKKYDAVRRCPDKGYECNLITKEKIKHYVSKDAMNIEGLGKKVVENFWD 462

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +++P DI+ L      +  KI  + G+G +S  NL  SINK + ISLE+FI+S
Sbjct: 463 LN----LVKLPHDIYKL------NFEKISQLEGWGKISANNLKKSINKTKKISLEKFIYS 512

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G E A+ LAK++ S + F +    ++   N+ +  L+ +  +G+    ++  F+
Sbjct: 513 LGIRHIGQENAKILAKFFQSIKIFKK----LVFEKNNLFKDLLELDGIGETQINSLRNFF 568

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            N  N    E L+K +  SI         +  NK  +FTG ++K+ R +A++ V   G  
Sbjct: 569 SNNTNKKVFEELIKNL--SILDFIIQSKGKFINKTFMFTGGMEKMSRSEAKQIVENEGGK 626

Query: 677 VSAILSRKTDIIIVGD-NPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   LS+K D ++ GD  P   K+ +A+ LG KI+ E+ +  L+ 
Sbjct: 627 VLGSLSKKLDYLVAGDSKPTLKKINQAKDLGTKILKEKDWYKLIN 671


>gi|261749390|ref|YP_003257075.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497482|gb|ACX83932.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 678

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 211/719 (29%), Positives = 353/719 (49%), Gaps = 60/719 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  ++++  L +++S ++  YY  +   I D  +D   R    +    P+     DP+ P
Sbjct: 8   KDIKEKIYQLRKKLSEYNYQYYALNTSEISDYNFDKKLRELFLLEKEHPEF---YDPSSP 64

Query: 75  LNKIG--GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             +IG  G+         H     SL+  ++ ++L  +  RI +           F  E 
Sbjct: 65  TLRIGVEGKKYADSSIYYHKYKMYSLQNTYSKKELMTWKKRIQKSISS------SFVCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           K DG  I + Y+ G   +A  RGDG  GE+V   +R I +IP  L   N PE +E+RGE+
Sbjct: 119 KYDGVSINLIYKNGFLTHAVTRGDGKKGEEVIENVRTIQSIPLKLIGENHPEYLEIRGEI 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++    FL +N +    G+ PYANPRN ASG L+  N  ++  R L+  V+ + +   + 
Sbjct: 179 FLPIKKFLEINAKRTRSGKNPYANPRNTASGTLKIQNSKEVYKRTLSCIVYSV-RGKNLP 237

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QY+ LQ +R  GF ++  V        I  + +     + TLPY IDG+V KV+E  
Sbjct: 238 FDTQYQALQTLRNWGFEISEKVLLCKKIKEIFHFLDYWSQWKQTLPYQIDGIVIKVNEHQ 297

Query: 311 LQKQLGERARSPRWMISHKF-AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            Q  LG   + PRW I++KF  +K + T+LL++  Q+GRTGI+TPVA + P  I G ++ 
Sbjct: 298 NQSLLGYTNKYPRWAIAYKFRPKKLSETKLLNLKFQVGRTGIITPVAEVIPKKISGTIVK 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
             TL+N  +I+ +            I  GD +L+++ G++IPKV  I + +R  +A P  
Sbjct: 358 RVTLYNHHFIQKM-----------GIHYGDALLLEKGGDIIPKVAKINLKKRLINASPIY 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F + CP C+S + +           +  C     C +Q + +++HFVS  A NI+G+G +
Sbjct: 407 FLTKCPSCRSHLRKKNE--------SFYCPNNF-CPSQNMRKIQHFVSERAMNIKGIGNE 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   ++       +   +D++ L+R       K+  I G  +    +L  +I K ++  
Sbjct: 458 MIKKLYQK----GFLYNISDLYQLKR------EKLLQIDGVKEKLADSLIKNIEKSKDNP 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +++LGI HVG  I++ L + +L+  +  Q           D   L  +  +G  I+
Sbjct: 508 SQRVLYALGIPHVGEYISKKLTEKFLNINSLIQA----------DEAQLTSISGIGKKIS 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++I  ++    N   VE L+K              KN  S IE K  +FTG L  + R+K
Sbjct: 558 ESIKTYFFTKENKKIVENLMKHGLNFSDFYKKNPVKNQYSPIEGKSFLFTGKLSSMTRNK 617

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYNT 723
           A+  V  LG  V   ++ + + I+VG N GSKLE+  +   +KI+ E+ F+ LL+Q   
Sbjct: 618 AKNLVELLGGRVFHTVNNQINFIVVGKNFGSKLERCMKKNHIKILTEDIFIKLLEQEKK 676


>gi|45659103|ref|YP_003189.1| NAD dependent DNA ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|81406496|sp|Q72MA6|DNLJ_LEPIC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|45602349|gb|AAS71826.1| NAD dependent DNA ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 681

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 203/732 (27%), Positives = 340/732 (46%), Gaps = 60/732 (8%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++    + LS ++A+  ++ L  EI +H   YY  + P I D ++D L RR   +  
Sbjct: 1   MPKKKEDSQKTLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP     +D   P   +G +++    K  H +P LSL   +N  +L +++ +       
Sbjct: 61  EFPQF---KDLASPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDNELLEWVNKT------ 111

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D    +++E KIDG  I + YE G       RG G  G+DV+  IR I  IP  L   
Sbjct: 112 --DPEGLYSVEWKIDGASIVLYYENGILKNGVTRGSGGIGDDVTDNIRTIRNIPLRLPE- 168

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            P  + +RGEV+++  DF   N    A+    YANPRN ++G +++ N +D   R L  F
Sbjct: 169 -PITVYLRGEVFMTFKDFEEFN----ALSSGKYANPRNLSAGSIKQKNSSDTAKRPLRIF 223

Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +     + E   K   E+  K+  L FPV       +    I     E K  + +L + 
Sbjct: 224 TYDATFPNMEKKFKTHQEIFSKLEKLTFPVPPNTAFVSGSK-IAKTIQEFKKQKDSLGFP 282

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DGLV K+++ S +  LG  + SPRW  ++KF      ++++DI   +GRTG +TP A +
Sbjct: 283 TDGLVIKLNDISKRDALGYTSHSPRWARAYKFDAIMKESKIVDITYAVGRTGKITPRAEI 342

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EP+++ G  +T ATLHN+DYI  L            + +G  V V + GE+IP V +++ 
Sbjct: 343 EPISLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEVV- 390

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               P  + F  P  CP C ++ ++       + +    C     C  +    +  +  R
Sbjct: 391 ---TPGKEVFKIPDRCPSCNTQTIKK------ESLVDLFCPNP-DCPDRVKNGIIFYCQR 440

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
              +IEGLG +Q++F +  +     I+  AD++ L+ ++     K+    GFG+ SV  +
Sbjct: 441 KQMDIEGLGDKQIEFLYDHD----YIKSIADLYDLKDQK----EKLMEEEGFGEKSVNII 492

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--IAHNNDDWL 596
              I + +       + SLG+  +G ++   L ++ +        I+ I  IA +     
Sbjct: 493 LKGIEQSKQKDFRFLLPSLGLSELGHKVTELLIEHGI------DSIDEILSIAKDQKKIE 546

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFT 655
           SL+ +P +G    QA  E + + R +  +E L K          +         +    T
Sbjct: 547 SLLEIPGIGPSTIQAFQENFSDKRILKLIERLKKAGLKMKADPIQVADQQPFAGQSWCVT 606

Query: 656 GTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           G+ +    R KA + +   G    + +S KT  ++ G   GSKLEKA +LGV + +E+QF
Sbjct: 607 GSFENFQPRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGVSVYDEKQF 666

Query: 715 LFLLQQYNTTLR 726
           L LL+      +
Sbjct: 667 LDLLKSLKIDFK 678


>gi|24216818|ref|NP_714299.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str.
           56601]
 gi|81465271|sp|Q8EYU4|DNLJ_LEPIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24198185|gb|AAN51317.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 681

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 204/732 (27%), Positives = 341/732 (46%), Gaps = 60/732 (8%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++    + LS ++A+  ++ L  EI +H   YY  + P I D ++D L RR   +  
Sbjct: 1   MPKKKEDSQKTLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP     +D   P   +G +++    K  H +P LSL   +N  +L +++ +       
Sbjct: 61  EFPQF---KDLASPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDNELLEWVNKT------ 111

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D    +++E KIDG  I + YE G       RG G  G+DV+  IR I  IP  L L 
Sbjct: 112 --DPEGLYSVEWKIDGASIVLYYENGILKNGVTRGSGGIGDDVTDNIRTIRNIP--LRLP 167

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            P  + +RGEV+++  DF   N    A+    YANPRN ++G +++ N +D   R L  F
Sbjct: 168 KPITVYLRGEVFMTFKDFEEFN----ALSSGKYANPRNLSAGSIKQKNSSDTAKRPLRIF 223

Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +     + E   K   E+  K+  L FPV       +    I     E K  + +L + 
Sbjct: 224 TYDATFPNMEKKFKTHQEIFSKLEKLTFPVPPNTAFVSGSK-IAKTIQEFKKQKDSLGFP 282

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DGLV K+++ S +  LG  + SPRW  ++KF      ++++DI   +GRTG +TP A +
Sbjct: 283 TDGLVIKLNDISKRDALGYTSHSPRWARAYKFDAIMKESKIVDITYAVGRTGKITPRAEI 342

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EP+++ G  +T ATLHN+DYI  L            + +G  V V + GE+IP V +++ 
Sbjct: 343 EPISLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEVV- 390

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               P  + F  P  CP C ++ ++       + +    C     C  +    +  +  R
Sbjct: 391 ---TPGKEVFKIPDRCPSCNTQTIKK------ESLVDLFCPNP-DCPDRVKNGIIFYCQR 440

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
              +IEGLG +Q++F +  +     I+  AD++ L+ ++     K+    GFG+ SV  +
Sbjct: 441 KQMDIEGLGDKQIEFLYDHD----YIKSIADLYDLKDQK----EKLMEEEGFGEKSVNII 492

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--IAHNNDDWL 596
              I + +       + SLG+  +G ++   L ++ +        I+ I  IA +     
Sbjct: 493 LKGIEQSKQKDFRFLLPSLGLSELGHKVTELLIEHGI------DSIDEILSIAKDQKKIE 546

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFT 655
           SL+ +P +G    QA  E + + R +  +E L K          +         +    T
Sbjct: 547 SLLEIPGIGPSTIQAFQENFSDKRILKLIERLKKAGLKMKADPIQVADQQPFAGQSWCVT 606

Query: 656 GTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           G+ +    R KA + +   G    + +S KT  ++ G   GSKLEKA +LGV + +E+QF
Sbjct: 607 GSFENFQPRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGVSVYDEKQF 666

Query: 715 LFLLQQYNTTLR 726
           L LL+      +
Sbjct: 667 LDLLKSLKIDFK 678


>gi|118474676|ref|YP_892270.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp. fetus
           82-40]
 gi|166215570|sp|A0RPY7|DNLJ_CAMFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118413902|gb|ABK82322.1| DNA ligase, NAD-dependent [Campylobacter fetus subsp. fetus 82-40]
          Length = 645

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 215/691 (31%), Positives = 342/691 (49%), Gaps = 60/691 (8%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           ++     YY    P+  D EYD L           PDL  S     P N+IGGE+     
Sbjct: 13  LNLWAKAYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSY---SPTNRIGGEILDEFK 69

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K++H     S+E I++  +L  +I+R        D     F  EPK DG  + + YE G 
Sbjct: 70  KISHIEKMWSMEDIFSDSELVAWISR-------GDKTDCEFFAEPKFDGASLNLLYENGN 122

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            + AA RGDG  GEDV+   + I ++P  L ++  + IE+RGEV I+K+DF  +N E   
Sbjct: 123 LISAATRGDGSVGEDVTNNAKVISSVP--LQIDYKDKIEIRGEVVITKDDFELINIERSK 180

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
               P ANPRNAA+G LR+L+   +  R L F+  G+G+ S  F K   +++  +R LGF
Sbjct: 181 NSEPPLANPRNAAAGSLRQLDNGIVKQRKLKFYPWGVGENSLKFNK-HSQIMDFVRSLGF 239

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
             +N  +       +   Y E+ S+R   P  +DG+V +V++ S   QLG   + P++M+
Sbjct: 240 LHDNFCKVIRGIDELKIAYKELLSVRELKPILMDGMVIRVNDLSKANQLGYTVKFPKFMV 299

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++KF   + + RL+DI +Q+GRTG++TPV  L+ V I GA I N TLHN D I  L+   
Sbjct: 300 AYKFPATEKTARLIDILLQVGRTGVVTPVGLLDGVLIDGAFIKNVTLHNFDEIDRLN--- 356

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                   +   D V V R+G+VIPK+  +  + R         P  CP C + ++    
Sbjct: 357 --------LMKNDFVTVIRSGDVIPKITGVFKDRRDGSQSEIIRPKICPKCGNELL---- 404

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                     +C   L C A+ +  + +F S+   NI+GLG   ++  ++       I+ 
Sbjct: 405 ----DEGVFIKCQN-LTCKARVVSSIIYFASKKCMNIDGLGDAIVELLYQKNI----IKD 455

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            ADI+ L               GF    ++NL  +IN  +  +L++FI SLGI H+G   
Sbjct: 456 IADIYRLDELSFIGLE------GFKTKKISNLLSAINNSKTPNLDKFIASLGIEHIGEVA 509

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A+ +A  Y                       L+ +   G+ +A + +EF +   N+  ++
Sbjct: 510 AKKIANNYGDR------------WLELTLEELLALDGFGEAMALSYLEFMRV--NLEKIK 555

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
            LL+ ++P +   E    +    K +V TGTL +  R + +  +   GA VS+ +S+KTD
Sbjct: 556 ELLEFITPKMQNLELKT-NIFSGKTVVITGTLSR-SRDEFKAELESYGAKVSSSVSKKTD 613

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            ++ G+  GSKLEKA +LGV+ ++E ++  L
Sbjct: 614 FVLYGNEAGSKLEKANELGVRAIDESEYESL 644


>gi|304390721|ref|ZP_07372673.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304325604|gb|EFL92850.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 799

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 202/825 (24%), Positives = 344/825 (41%), Gaps = 135/825 (16%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI-----ILDSEYDALKRRC 55
           +KK+  IP      E A  + + L  +I      YY    P      + D+EYDAL  + 
Sbjct: 2   VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQ-TPETGVTRLSDAEYDALFVQL 54

Query: 56  DAIAHAFPDLARSEDPNGPLNKIGG----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111
             +  A+PDL     P+ P   +GG              H     S++ +++  ++  + 
Sbjct: 55  QLLEAAYPDLV---TPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWW 111

Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171
            R+ +     +      + E K+DG  +++ Y  G     A RGDG +GEDV+  ++ I 
Sbjct: 112 ARVEKSL---EGQDFSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIA 168

Query: 172 TIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
           T+P  L   N+PE++E+RGEVY+   DF A+N      G K +ANPRNAA+G L++ +P 
Sbjct: 169 TVPVRLSGENVPELVEIRGEVYLPLADFAAMNAARERDGEKLFANPRNAATGSLKQKDPV 228

Query: 231 DIT-RYLNFFVHGLGKTSEIFA------KGQYEMLQKMRCLG------FPVNNGVRQA-- 275
               R L F  HG+G+            + Q +  + +   G       P + G+  A  
Sbjct: 229 QAAKRPLAFLAHGVGEVRWADPGAAAHLETQEDFYELLESWGLHSVRETPASLGMSLAGI 288

Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
           ++   I +  ++M + R    + IDG+V KVD F+ +  LG  AR+PRW  ++KF  ++ 
Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            TRLL I++Q+GRTG +TP   +E V + G+ ++ ATLHN   +             +D+
Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHNAKEVAR-----------KDV 397

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           R GD V++++AG++IP+++  +++ R      +  P  CP C + +         +    
Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRPAGLPEWVMPDTCPSCGTEL-----GAQKEGDID 452

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI----------- 504
            RC     C AQ  ERL H  SR+A +IEGLG++      + E     +           
Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEEGALALTQPEFGRGDVAAALAAGGHCE 512

Query: 505 --------------------------------RIPADIFTLQRRQQTSTTKIENILGFGD 532
                                              A +F LQ            I G G 
Sbjct: 513 LEDGTIVAVPSGEPRSLEAIEDLLPPPQSPVLTSEAGLFALQPEDLRDVMVWREIPGTGG 572

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----------------- 575
                +       +   L +       +  G  +A  + + +                  
Sbjct: 573 RDWQQV--RFFWAKPRPLPKAAQEATGQRFGPPVAGKVVQTFFEQLQAAKSKELWRVLVA 630

Query: 576 ---------SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
                    + +  A++   + A        L     +G++IA +I +++  P +   V+
Sbjct: 631 LSIRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWFTVPWHQEIVD 690

Query: 627 ALLKEVSPSIGRHEKNVSS----------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           A       ++ + E    +           +E   +V TG +    R  AQ  V   G  
Sbjct: 691 AWEAAGVGAVSKAEGASEASLAGDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGK 750

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            +  +S+KTD+++ G   GSKL KAQ LG+ ++    F  LL++ 
Sbjct: 751 ATGSVSKKTDLVVAGAGAGSKLSKAQALGIPVIESAGFEALLEKG 795


>gi|315656502|ref|ZP_07909391.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493061|gb|EFU82663.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 799

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 199/825 (24%), Positives = 339/825 (41%), Gaps = 135/825 (16%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI-----ILDSEYDALKRRC 55
           +KK+  IP      E A  + + L  +I      YY    P      + D+EYDAL  + 
Sbjct: 2   VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQ-TPETGVTRLSDAEYDALFVQL 54

Query: 56  DAIAHAFPDLARSEDPNGPLNKIGG----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111
             +  A+PDL     P+ P   +GG              H     S++ +++  ++  + 
Sbjct: 55  QLLEAAYPDLV---TPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWW 111

Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171
            R+ +     +      + E K+DG  +++ Y  G     A RGDG +GEDV+  ++ I 
Sbjct: 112 ARVEKSL---EGQDFSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIA 168

Query: 172 TIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
           T+P  L   N+PE++E+RGEVY+   DF A+N      G K +ANPRNAA+G L++ +P 
Sbjct: 169 TVPVRLSGENVPELVEIRGEVYLPLADFAAMNATRERDGEKLFANPRNAATGSLKQKDPV 228

Query: 231 DIT-RYLNFFVHGLGKTSEIFA------KGQYEMLQKMRCLGFPVNNGV--------RQA 275
               R L F  HG+G+            + Q +  + +   G                  
Sbjct: 229 QAAKRPLAFLAHGVGEVRWADPGAAAHLETQEDFYELLESWGLHSVRETPASLGLSLAGI 288

Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
           ++   I +  ++M + R    + IDG+V KVD F+ +  LG  AR+PRW  ++KF  ++ 
Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            TRLL I++Q+GRTG +TP   +E V + G+ ++ ATLHN   +             +D+
Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHNAKEVAR-----------KDV 397

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           R GD V++++AG++IP+++  +++ R      +  P  CP C + +         +    
Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRPAGLPEWVMPDTCPSCGTEL-----GAQKEGDID 452

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI----------- 504
            RC     C AQ  ERL H  SR+A +IEGLG++      + E     +           
Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEEGALALTQPEFGRGDVAAALAAGGHCE 512

Query: 505 --------------------------------RIPADIFTLQRRQQTSTTKIENILGFGD 532
                                              A +F LQ            I G G 
Sbjct: 513 LEDGTIVAVPSGEPRSLEAIEDLLPPPQSPVMTSEAGLFALQPEDLRDVMVWREIPGTGG 572

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----------------- 575
                +       +   L +       +  G  +A  + + +                  
Sbjct: 573 RDWQQV--RFFWAKPRPLPKAAQEATGQRFGPPVAGKVVQTFFEQLQAAKSKELWRVLVA 630

Query: 576 ---------SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
                    + +  A++   + A        L     +G++IA +I +++  P +   V+
Sbjct: 631 LSIRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWFTVPWHQEIVD 690

Query: 627 ALLKEVSPSIGRHEKNVSS----------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           A       ++ + E    +           +E   +V TG +    R  AQ  V   G  
Sbjct: 691 AWEAAGVGAVSKAEGASEASLAGDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGK 750

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            +  +S+KTD+++ G   GSKL KAQ LG+ ++    F  LL++ 
Sbjct: 751 ATGSVSKKTDLVVAGAGAGSKLSKAQALGIPVIESAGFEALLEKG 795


>gi|16125769|ref|NP_420333.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15]
 gi|221234527|ref|YP_002516963.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000]
 gi|81535469|sp|Q9A842|DNLJ_CAUCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781280|sp|B8H5Y7|DNLJ_CAUCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13422903|gb|AAK23501.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15]
 gi|220963699|gb|ACL95055.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000]
          Length = 783

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 239/613 (38%), Positives = 339/613 (55%), Gaps = 24/613 (3%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP+  L+  QA ++L  L   ++ HD  Y+Q   P + D+EYDALKRR   I   FP L 
Sbjct: 4   IPVADLTEAQAVEDLERLADLLATHDIAYHQEDNPTVSDAEYDALKRRNLDIETRFPHLV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    N P  ++G         V H +P LSL+  ++ ++  +F  R+ RF +     ++
Sbjct: 64  RD---NSPSMRVGATRAEQFAPVEHGVPMLSLDNAFSNDEAIEFDARVRRFLRISPSETV 120

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185
            +T EPKIDG   ++RYEKG  V  A RGDG  GEDV+A +R I  IP  L     P++I
Sbjct: 121 AYTAEPKIDGLSASLRYEKGVLVQGATRGDGRVGEDVTANLRTIADIPHRLKGSGWPDVI 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY+    F A N      G++ YANPRN A+G LR+++P     R L FF +  G
Sbjct: 181 EVRGEVYVELAAFAAFNKAAEEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFFGYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             SE FA  Q+  L+++   GF       ++     G++  Y + + +R TL +DIDG+V
Sbjct: 241 LVSEGFADSQWGALERLAEWGFVTTAPPAQRVLNAQGLLDIYAQFEVLRPTLGFDIDGVV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+  LQ++LG  +RSPRW I+ KF  ++A T L  ID+Q+GRTG +TPVARL+PV +
Sbjct: 301 YKVDDLELQRRLGFVSRSPRWAIARKFPAQRARTVLEAIDLQVGRTGAITPVARLKPVTV 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERH 422
           GG  +TNATLHN D I  L           D+RVGD V+++RAG+VIP++V++ +     
Sbjct: 361 GGVSVTNATLHNGDEIARL-----------DVRVGDTVVIQRAGDVIPQIVEVALDARPD 409

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P   P+ FP  CP      +      +G+     RCTG  AC  Q++E L+HFVSR AF+
Sbjct: 410 PAPPPYEFPHVCPCPLQTPLAREVTASGQESVVRRCTGEFACPFQRVEHLRHFVSRRAFD 469

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG++QL  FF+       I  PADIF L  R       +    G+G+ SV NL   I
Sbjct: 470 IEGLGEKQLQAFFEE----GWITEPADIFKL-ARDAEKLAVLREREGYGETSVANLVKGI 524

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-QEINNIIAHNNDDWLSLIRV 601
             RR I ++R I+ LG R +G   +  LA+ +  +++          A   + +L L   
Sbjct: 525 EARRTIGMDRMIYGLGARDIGETTSTVLARNFDRFEDLQAAAEAAARALPGETYLELSTA 584

Query: 602 PLVGDIIAQAIVE 614
           P VG      +VE
Sbjct: 585 PGVGPKALDMLVE 597



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 87/162 (53%), Gaps = 2/162 (1%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIA-HNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           +  +      +LA+ Y ++  FA  +    +    DD+L L  +  VG + AQ++  F+ 
Sbjct: 622 VPKLTKPARAALAQRYGTWDAFADGLVAAASGAPGDDYLHLAAIDGVGPVAAQSLARFFA 681

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              N   V  L+ E+        K   + +  K +VFTG+L+K+ R +A+     LGA V
Sbjct: 682 EDHNRQKVANLVAELDIQPVAKPK-TDTAVAGKTIVFTGSLEKMTRDEAKAQAEGLGAKV 740

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ +S+KTD+++ G   GSKL+ A  LG+++M E+++L L+ 
Sbjct: 741 ASSVSKKTDLVVAGPGAGSKLKTATDLGIQVMTEDEWLELVA 782


>gi|298345134|ref|YP_003717821.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063]
 gi|298235195|gb|ADI66327.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063]
          Length = 799

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 200/825 (24%), Positives = 339/825 (41%), Gaps = 135/825 (16%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI-----ILDSEYDALKRRC 55
           +KK+  IP      E A  + + L  +I      YY    P      + D+EYDAL  + 
Sbjct: 2   VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQ-TPETGVTRLSDAEYDALFVQL 54

Query: 56  DAIAHAFPDLARSEDPNGPLNKIGG----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111
             +  A+PDL     P+ P   +GG              H     S++ +++  ++  + 
Sbjct: 55  QLLEAAYPDLV---TPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWW 111

Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171
            R+ +     +      + E K+DG  +++ Y  G     A RGDG +GEDV+  ++ I 
Sbjct: 112 ARVEKSL---EGQDFSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIA 168

Query: 172 TIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
           T+P  L   N+PE++E+RGEVY+   DF A+N      G K +ANPRNAA+G L++ +P 
Sbjct: 169 TVPVRLSGENVPELVEIRGEVYLPLADFAAMNAARERDGEKLFANPRNAATGSLKQKDPV 228

Query: 231 DIT-RYLNFFVHGLGKTSEIFA------KGQYEMLQKMRCLGFPVNNGV--------RQA 275
               R L F  HG+GK            + Q +  + +   G                  
Sbjct: 229 QAAKRPLAFLAHGVGKVRWADPGAAAHLETQEDFYELLESWGLHSVRETPASLGLSLAGI 288

Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
           ++   I +  ++M + R    + IDG+V KVD F+ +  LG  AR+PRW  ++KF  ++ 
Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            TRLL I++Q+GRTG +TP   +E V + G+ ++ ATLHN   +             +D+
Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHNAKEVAR-----------KDV 397

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           R GD V++++AG++IP+++  +++ R      +  P  CP C + +         +    
Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRTAGLPEWVMPDTCPSCGTEL-----GAQKEGDID 452

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI----------- 504
            RC     C AQ  ERL H  SR+A +IEGLG++      + E     +           
Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEEGALALTQPEFGRGDVAAALAAGGHCE 512

Query: 505 --------------------------------RIPADIFTLQRRQQTSTTKIENILGFGD 532
                                              A +F LQ            I G G 
Sbjct: 513 LEDGTIVAVPSGEPRSLEAIEDLLPPPQSPVLTSEAGLFALQPEDLRDVMVWREIPGTGG 572

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----------------- 575
                +       +   L +       +  G  +A  + + +                  
Sbjct: 573 RDWQQV--RFFWAKPRPLPKAAQEATGQRFGPPVAGKVVQTFFEQLQAAKSKELWRVLVA 630

Query: 576 ---------SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
                    + +  A++   + A        L     +G++IA +I +++  P +   V+
Sbjct: 631 LSIRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWFTVPWHQEIVD 690

Query: 627 ALLKEVSPSIGRHEKNVSS----------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           A       ++ + E    +           +E   +V TG +    R  AQ  V   G  
Sbjct: 691 AWEAAGVGAVSKAEGASEASLAGDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGK 750

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            +  +S+KTD+++ G   GSKL KAQ LG+ ++    F  LL++ 
Sbjct: 751 ATGSVSKKTDLVVAGAGAGSKLSKAQALGIPVIESAGFEALLEKG 795


>gi|197294788|ref|YP_001799329.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense]
 gi|254781387|sp|B1VAY1|DNLJ_PHYAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171854115|emb|CAM12104.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense]
          Length = 670

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 218/697 (31%), Positives = 381/697 (54%), Gaps = 47/697 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E   K++  L  +++  +  YY  S P + D +YDAL +    +   FP       P
Sbjct: 2   INLELIEKKIKDLTNQLNEANYEYYVKSNPKLTDQQYDALLKELLVLEKKFPQFTL---P 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  KIGG +      V H+   +SL   +N+++L+ F  RI + +     +S     E
Sbjct: 59  YSPTLKIGGFVEKKFSTVKHTSAMMSLANAFNLKELKAFYDRIAKKF-----SSFSMVSE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  ++++Y+KG    A  RG+G  GE+++  ++ I  +P  L L  P  +EVRGE+
Sbjct: 114 LKIDGVAVSLKYKKGILFQALTRGNGVWGEEITKNVQTIKQVP--LKLTQPLDLEVRGEI 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+S + F  LN +     +  ++NPRNAASG +R+LN + +  R L+ F++ +     + 
Sbjct: 172 YLSNSSFQKLNQQRKIAQQPLFSNPRNAASGTIRQLNSSIVAQRNLSIFIYSIQN-PYLL 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E L  +  LGF VN   + +++F  +     E++ ++  L Y+ DG+V K++E +
Sbjct: 231 KSTQEETLTFLASLGFSVNPYYKCSSSFEELEIKIQELEKLQQNLDYNTDGVVVKINELN 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L   +G+  +SP+W I++KFA K + + + +I  Q+GR+G+LTPV ++ PV + G+L++ 
Sbjct: 291 LHDSIGKTTKSPKWAIAYKFATKNSESVVQEIIFQVGRSGMLTPVCKIIPVMVDGSLVSK 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
             LHN DYI             +DIR+ D V V +AG VIP++ ++I ++R  D++PF+ 
Sbjct: 351 VVLHNYDYI-----------CKKDIRLKDYVQVHKAGSVIPEIKEVIKSKRPSDSKPFAM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C S + ++           + C     C  Q++++L HFVS++A +I+ LG Q 
Sbjct: 400 ITQCPSCHSLLNKNKGE------VDYFCINK-NCLEQKIQKLIHFVSKNAMDIDTLGNQT 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L  FF  +     I  P+DI+ L+     +   ++ I GFG   V N+  S+ K +N SL
Sbjct: 453 LITFFNQK----LIENPSDIYLLKN----NLDVLQKINGFGAKKVQNILTSVEKSKNKSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  +F LGI+HVG ++++ L K++ S +   +          ++  S+  +P +G+ IA 
Sbjct: 505 ENVLFGLGIKHVGLKVSQVLTKHFDSIEILQKT-------TLENLESIKSIPEIGEKIAL 557

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++ +++QNP ++  +  L +      S    +    +   NKK+V TG+LQ   R + ++
Sbjct: 558 SLQKYFQNPLHLEEITKLKQLGVSFKSTTTSQIKAPNFFTNKKVVLTGSLQNYTRSQIKK 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            + Q GA+++  LS +T ++I G NPGSKL+KA+ L 
Sbjct: 618 LLIQKGAIINDALSSQTHLLITGANPGSKLQKAKTLN 654


>gi|116329958|ref|YP_799676.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|122282269|sp|Q04W02|DNLJ_LEPBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116123647|gb|ABJ74918.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 681

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 200/732 (27%), Positives = 338/732 (46%), Gaps = 60/732 (8%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++      LS ++A+K ++ L  EI +H   YY  ++P I D ++D L +R   +  
Sbjct: 1   MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP     +D N P   +G +++    K  H +P LSL   +N ++L  ++ +       
Sbjct: 61  EFPQF---KDLNSPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDDELLDWVNKT------ 111

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D    +++E KIDG  I + YE G       RG G  G+DV+  IR +  IP  L   
Sbjct: 112 --DPDGLYSVEWKIDGASIVLYYENGMLKNGVTRGSGGIGDDVTDNIRTVRNIPLRLPE- 168

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            P  + +RGEV+++  DF   N+    +    YANPRN ++G +++ N  D   R L  F
Sbjct: 169 -PITVYLRGEVFMTFKDFEEFNE----LSSGKYANPRNLSAGSIKQKNSADTAKRPLRIF 223

Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +           K   ++L K+  L FPV       N    I     + K  + TL + 
Sbjct: 224 TYDATFPGFTKKFKTHQQILSKLEKLTFPVPPDTVFVNGSK-IAETIKDFKKKKDTLGFP 282

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DGLV K+++ S +   G  + SPRW  ++KF      +R++DI   +GRTG +TP   +
Sbjct: 283 TDGLVIKLNDISKRDAQGYTSHSPRWARAYKFDAIMKESRIVDITYAVGRTGKITPRVEI 342

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPVN+ G  +T ATLHN+DYI  L            + +G  V V + GE+IP V ++I 
Sbjct: 343 EPVNLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEVI- 390

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               P    F  P +CP C+++ ++  N      +    C     C  +    +  +  R
Sbjct: 391 ---TPGKDVFKIPDYCPSCKTKTIKKEN------LVDLFCPNP-DCPDRVKNGIIFYCQR 440

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
              +IEGLG +Q++F +        IR  AD++ L+ ++     K+    GFG+ S+  +
Sbjct: 441 KQMDIEGLGDKQIEFLYDH----GYIRSIADLYDLKDQK----EKLMEEEGFGEKSLAII 492

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL-- 596
           ++ I   +       + S+G+  +G ++   L ++ +        I+ I++   D     
Sbjct: 493 FNGIEHSKQKDFRFLLPSIGLPELGHKVTELLIEHGI------DSIDEILSIAKDKKRIS 546

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFT 655
           SL+ +P +G    +A  E + + R +  +       +       + +       +    T
Sbjct: 547 SLLEIPGIGPSTIKAFEENFSDKRILKLIARLKNAGLKLKADPIKVSDQQPFAGQSWCVT 606

Query: 656 GTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           G+ +    R KA + V   G    + +S KT  ++ G   GSKLEKA +LG+ + NE+QF
Sbjct: 607 GSFENFQPRDKAMDLVVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGIVVYNEKQF 666

Query: 715 LFLLQQYNTTLR 726
           L LL+      +
Sbjct: 667 LDLLKSLKINFK 678


>gi|116329438|ref|YP_799158.1| DNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|122282782|sp|Q04XH0|DNLJ_LEPBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116122182|gb|ABJ80225.1| DNA ligase (NAD+) (contains BRCT domain type II) [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 681

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 200/732 (27%), Positives = 338/732 (46%), Gaps = 60/732 (8%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++      LS ++A+K ++ L  EI +H   YY  ++P I D ++D L +R   +  
Sbjct: 1   MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP     +D N P   +G +++    K  H +P LSL   +N ++L  ++ +       
Sbjct: 61  EFPQF---KDLNSPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDDELLDWVNKT------ 111

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D    +++E KIDG  I + YE G       RG G  G+DV+  IR +  IP  L   
Sbjct: 112 --DPDGLYSVEWKIDGASIVLYYENGMLKNGVTRGSGGIGDDVTDNIRTVRNIPLRLPE- 168

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            P  + +RGEV+++  DF   N+    +    YANPRN ++G +++ N  D   R L  F
Sbjct: 169 -PITVYLRGEVFMTFKDFEEFNE----LSSGKYANPRNLSAGSIKQKNSADTAKRPLRIF 223

Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +           K   ++L K+  L FPV       N    I     + K  + TL + 
Sbjct: 224 TYDATFPGFTKKFKTHQQILSKLEKLTFPVPPDTVFVNGSK-IAETIKDFKKKKDTLGFP 282

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DGLV K+++ S +   G  + SPRW  ++KF      +R++DI   +GRTG +TP   +
Sbjct: 283 TDGLVIKLNDISKRDAQGYTSHSPRWARAYKFDAIMKESRIVDITYAVGRTGKITPRVEI 342

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPVN+ G  +T ATLHN+DYI  L            + +G  V V + GE+IP V ++I 
Sbjct: 343 EPVNLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEVI- 390

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               P    F  P +CP C+++ ++  N      +    C     C  +    +  +  R
Sbjct: 391 ---TPGKDVFKIPDYCPSCKTKTIKKEN------LVDLFCPNP-DCPDRVKNGIIFYCQR 440

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
              +IEGLG +Q++F +        IR  AD++ L+ ++     K+    GFG+ S+  +
Sbjct: 441 KQMDIEGLGDKQIEFLYDH----GYIRSIADLYDLKDQK----EKLIEEEGFGEKSLAII 492

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL-- 596
           ++ I   +       + S+G+  +G ++   L ++ +        I+ I++   D     
Sbjct: 493 FNGIEHSKQKDFRFLLPSIGLPELGHKVTELLIEHGI------DSIDEILSIAKDKKRIS 546

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFT 655
           SL+ +P +G    +A  E + + R +  +       +       + +       +    T
Sbjct: 547 SLLEIPGIGPSTIKAFEENFSDKRILKLIARLKNAGLKLKADPIKVSDQQPFAGQSWCVT 606

Query: 656 GTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           G+ +    R KA + V   G    + +S KT  ++ G   GSKLEKA +LG+ + NE+QF
Sbjct: 607 GSFENFQPRDKAMDLVVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGIVVYNEKQF 666

Query: 715 LFLLQQYNTTLR 726
           L LL+      +
Sbjct: 667 LDLLKSLKINFK 678


>gi|194246669|ref|YP_002004308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali]
 gi|254781388|sp|B3QZS5|DNLJ_PHYMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193807026|emb|CAP18462.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali]
          Length = 659

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 216/709 (30%), Positives = 370/709 (52%), Gaps = 53/709 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E+ +K +  L  +I+  +  YY  ++  + D +YDAL R    +   +P+         
Sbjct: 1   MEEIKKRIIFLIDKINKTNYEYYTLNESSLNDQQYDALFRELLYLESKYPEYNYKF---S 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  KIGG ++    K  H    LSL  ++NI++L+ F  RI +       ++     E K
Sbjct: 58  PTTKIGGPISSKFHKFLHEKSMLSLNNVFNIKELKLFYDRISKKI-----SNFTLLTELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y+KG    A  RGDG+ GE ++  ++ I  +P  L L  P  +EVRGEVY+
Sbjct: 113 IDGLAVSLKYKKGILDKAITRGDGYQGELITDNVKTIKELP--LKLKEPLDLEVRGEVYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
           S   F  LN       +  +ANPRNAASG LR+L+      R L+ F++ +    +    
Sbjct: 171 SYESFNYLNQIRKKENKSLFANPRNAASGTLRQLDSKVAAERNLSIFLYTIVNPPKFII- 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q  +L+ +  L FPVNN       +  ++   +  + I++ L Y+ DG+V K++E S  
Sbjct: 230 TQKSILEFLTYLQFPVNNYYEYVLNWDQLIKKISYYEEIKNHLGYNTDGIVIKINELSFH 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             +G  +++P+W I++KF   +  T + +I  QIGRTGI+TP+A L P  + G++I+   
Sbjct: 290 SIIGYTSKAPKWAIAYKFKVFKTETLINNILFQIGRTGIVTPIAELLPTIVDGSVISKVN 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYIK            +DIRV D VLV ++G +IP+++++I  +R  +  PF   +
Sbjct: 350 LHNFDYIK-----------QKDIRVNDFVLVHKSGSIIPEIIEVIKTKR-KNQIPFEMIT 397

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            C  C +++++          + H C   L C  ++++ L +FVS+ A +I  LG Q L 
Sbjct: 398 HCYSCNTKLIKK--------DSNHFCFN-LDCEEKKIQELFYFVSKSAMDINVLGLQTLK 448

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F        I   +D+++L + ++    ++E + GFG     N+  S+ K +N  L  
Sbjct: 449 ILF----YKGFINNISDLYSLNQYKK----EVEELHGFGKKKFNNIIISLEKSKNKCLSN 500

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+  LGI++VG  +A+ LA+ + +  N  +              SL+++  +G   AQ I
Sbjct: 501 FLIGLGIKNVGIHLAKILAQKFENIDNLQKA----------SIESLLKIDEIGIKSAQNI 550

Query: 613 VEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
             F+ N +N+  +E                   ++  +NKK++FTG L+K  R++AQ  V
Sbjct: 551 KNFFLNSKNLKLIEKFKNLGLNLFYFKSKNNIKNNIFKNKKVIFTGILEKYSRNQAQNIV 610

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +LG V+   ++ KT+ +I+G NPGSKL KA++  +K++ E +F  L++
Sbjct: 611 IELGGVIINSITNKTNYLILGKNPGSKLLKAKKFNIKVLQEHEFEELIK 659


>gi|12045108|ref|NP_072919.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
 gi|1352291|sp|P47496|DNLJ_MYCGE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3844852|gb|AAC71474.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
 gi|166078824|gb|ABY79442.1| DNA ligase, NAD-dependent [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 659

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 203/707 (28%), Positives = 353/707 (49%), Gaps = 55/707 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + ++  L   I  +D  YY  S+P+I D EYD L +    +    PDL +    + 
Sbjct: 1   MMDVKLKIQQLVNLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQI---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE      K+ H+ P LSLE  ++ +++  FI  I      + ++   F +EPK
Sbjct: 58  PTQRVGGEAVKGFKKLNHNSPMLSLENAFSTKEIANFIDNI----NFQTNSKNEFVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++ Y+ G  V+A  RGDG  GEDV   ++ I +IP  L++   + IE+RGE+++
Sbjct: 114 IDGVSISLTYKNGVLVHALTRGDGSVGEDVLNNVKTIKSIP--LTIPFTKTIEIRGEIFV 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
            K  FLA+N+++     KP+AN RN A+G +R LN      R L    + +    E    
Sbjct: 172 DKKTFLAINNQL----EKPFANARNLAAGTIRNLNSEITAQRKLRALFYYIPNGLEESIT 227

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q  +L++++   FPV++ +R       +++Y       R  L +++DGLV K++     
Sbjct: 228 TQTMVLEQLKQWKFPVSDTIRVFQNKFQLINYLEAFDKKREQLTFNLDGLVIKLNSLLFY 287

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  ++SPRW I+ KF+ K   T+L  + I IGRTG +   A+LE VN+ G  +T AT
Sbjct: 288 QQLGATSKSPRWAIAFKFSPKFVQTKLTAVLITIGRTGRVNYTAKLESVNLDGTKVTAAT 347

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYIK            +DIR+ D V++ +AGE+IPKV+ + + +R  D        
Sbjct: 348 LHNFDYIKT-----------KDIRINDTVVIYKAGEIIPKVLKVNLEKRKNDTIIIQEQK 396

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           +CP C S++V+ ++           CT    C  + ++ + +FVS+ A +I GL    + 
Sbjct: 397 YCPSCNSKLVKIVDE------VDQYCTNE-TCKERNIQLINYFVSKTAMDINGLNINTIT 449

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++       +R   D++ L+ ++         I   GD     L D+I   +   + R
Sbjct: 450 KLYEHN----LVRSIVDLYDLKDKKNQVLKLDLKI---GDKLFNKLVDNIENSKQKGMAR 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +  LGI+HVG  +A++LA ++           NI A  +    +LI +  VG  +A+++
Sbjct: 503 LLTGLGIKHVGNVLAKNLANHF----------KNIKALQHASLENLISLNDVGITVAESL 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEY 669
             ++ +P ++  +E L      +     K     +S    K+ + TG+   I R + ++ 
Sbjct: 553 YNWFHDPNHLQLIEQLELRQVKTDQLPLKINFETNSIYFQKRFLITGSF-NISRDQIKDL 611

Query: 670 VTQ-LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
           ++       ++ +    D +I G+ P   K+  A++L + I+NE  +
Sbjct: 612 LSAKFDCQFASEVKPTVDFVIAGNKPTLRKINHAKELNIPIINEAIW 658


>gi|255660255|ref|ZP_05405664.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
          Length = 658

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 203/705 (28%), Positives = 352/705 (49%), Gaps = 55/705 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             + ++  L   I  +D  YY  S+P+I D EYD L +    +    PDL +    + P 
Sbjct: 2   DVKLKIQQLVNLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQI---DSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE      K+ H+ P LSLE  ++ +++  FI  I      + ++   F +EPKID
Sbjct: 59  QRVGGEAVKGFKKLNHNSPMLSLENAFSTKEIANFIDNI----NFQTNSKNEFVVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ Y+ G  V+A  RGDG  GEDV   ++ I +IP  L++   + IE+RGE+++ K
Sbjct: 115 GVSISLTYKNGVLVHALTRGDGSVGEDVLNNVKTIKSIP--LTIPFTKTIEIRGEIFVDK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             FLA+N+++     KP+AN RN A+G +R LN      R L    + +    E     Q
Sbjct: 173 KTFLAINNQL----EKPFANARNLAAGTIRNLNSEITAQRKLRALFYYIPNGLEESITTQ 228

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++   FPV++ +R       +++Y       R  L +++DGLV K++     +Q
Sbjct: 229 TMVLEQLKQWKFPVSDTIRVFQNKFQLINYLEAFDKKREQLTFNLDGLVIKLNSLLFYQQ 288

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW I+ KF+ K   T+L  + I IGRTG +   A+LE VN+ G  +T ATLH
Sbjct: 289 LGATSKSPRWAIAFKFSPKFVQTKLTAVLITIGRTGRVNYTAKLESVNLDGTKVTAATLH 348

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N DYIK            +DIR+ D V++ +AGE+IPKV+ + + +R  D        +C
Sbjct: 349 NFDYIKT-----------KDIRINDTVVIYKAGEIIPKVLKVNLEKRKNDTIIIQEQKYC 397

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S++V+ ++           CT    C  + ++ + +FVS+ A +I GL    +   
Sbjct: 398 PSCNSKLVKIVDE------VDQYCTNE-TCKERNIQLINYFVSKTAMDINGLNINTITKL 450

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       +R   D++ L+ ++         I   GD     L D+I   +   + R +
Sbjct: 451 YEHN----LVRSIVDLYDLKDKKNQVLKLDLKI---GDKLFNKLVDNIENSKQKGMARLL 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGI+HVG  +A++LA ++           NI A  +    +LI +  VG  +A+++  
Sbjct: 504 TGLGIKHVGNVLAKNLANHF----------KNIKALQHASLENLISLNDVGITVAESLYN 553

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ +P ++  +E L      +     K     +S    K+ + TG+   I R + ++ ++
Sbjct: 554 WFHDPNHLQLIEQLELRQVKTDQLPLKINFETNSIYFQKRFLITGSF-NISRDQIKDLLS 612

Query: 672 Q-LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
                  ++ +    D +I G+ P   K+  A++L + I+NE  +
Sbjct: 613 AKFDCQFASEVKPTVDFVIAGNKPTLRKINHAKELNIPIINEAIW 657


>gi|56807783|ref|ZP_00365637.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus pyogenes M49 591]
          Length = 571

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 197/618 (31%), Positives = 321/618 (51%), Gaps = 50/618 (8%)

Query: 102 WNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGE 161
           +  E+L  F  R+       +  +  +  E KIDG  I++ YE G     A RGDG+ GE
Sbjct: 2   FFREELDAFDKRVKA-----EFPNATYLAELKIDGLSISLSYENGFLQVGATRGDGNIGE 56

Query: 162 DVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAAS 221
           +++  I+ I  IP  LS   P  I VRGE Y+S+  F A+N+     G   +ANPRNAA+
Sbjct: 57  NITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSFKAINEARQENGETEFANPRNAAA 114

Query: 222 GILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHG 280
           G LR+L+   +  R L  F++   + S      Q E+L ++  LGF VN   +  ++   
Sbjct: 115 GTLRQLDTAVVAKRELATFLY--QEASPTARNQQNEVLAELADLGFSVNPYYQLTSSMDE 172

Query: 281 IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
           I  +   +++ R  L YDIDG+V KV+  ++Q++LG   ++PRW I++KF  ++    +L
Sbjct: 173 IWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGFTVKAPRWAIAYKFPAEEKEAEIL 232

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            +D  +GRTG++TP A L PV + G  ++ ATLHN DYI             +DIR+GD 
Sbjct: 233 SVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEKDIRIGDT 281

Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG 460
           V+V +AG++IP V+++++++R+        P  CP C S +V   +        A RC  
Sbjct: 282 VIVYKAGDIIPAVLNVVMSKRNQQEVML-IPKLCPSCGSELVHFEDE------VALRCIN 334

Query: 461 GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS 520
            L C +     L+HF SRDA NI GLG   ++  F     A  +   ADI+ L +     
Sbjct: 335 PL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF----LAGFVHDVADIYQLTK----- 384

Query: 521 TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
                 + G  + S   L  +I   ++ S E+ +F LGIRH+G++++R + + Y      
Sbjct: 385 -ENFMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGLGIRHIGSKVSRLILEVYGDISAL 443

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRH 639
                  IA          R+  +G  IAQ++ ++++       V+      V+      
Sbjct: 444 LTAKEEEIA----------RIDGLGSTIAQSLTQYFEQKTAAILVDELKTAGVNMHYSGQ 493

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           + N  + +    +V TG L ++ R++A++ +  LGA V+  +S+KTD++I G + GSKLE
Sbjct: 494 KVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAKVTGSVSKKTDLVIAGSDAGSKLE 553

Query: 700 KAQQLGVKIMNEEQFLFL 717
           KA+ LG++I +E+    L
Sbjct: 554 KAKSLGIRIEDEDWLRQL 571


>gi|285018504|ref|YP_003376215.1| NAD-dependent_DNA_ligase [Xanthomonas albilineans GPE PC73]
 gi|283473722|emb|CBA16225.1| putative nad-dependent_dna_ligase protein [Xanthomonas albilineans]
          Length = 838

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 232/726 (31%), Positives = 354/726 (48%), Gaps = 106/726 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L  ++   +  YY  + P I D+EYDAL R  +A+  A P LAR    + P   
Sbjct: 8   QQRVVELRSQLEDANHRYYVLADPAIPDAEYDALMRELEALESAHPALARE---DSPTRS 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWN-------------IEDLRKFITRIYRFWQKKDDN 124
           +G   +    +V H+IP LSL   +                ++  F  RI R  +     
Sbjct: 65  VGARPDSGFPEVRHAIPMLSLANAFETPSVAEDADDRIRFAEVADFERRIERELELAA-- 122

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NI 181
              F++EPK+DG  I++RYE G FV  A RGDG +GEDV+A +R + ++P  L      +
Sbjct: 123 -PVFSVEPKLDGLAISLRYEDGVFVQGATRGDGSTGEDVTANLRQVRSVPLRLRELGMPM 181

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFV 240
           P ++EVRGE+Y+ +  F A N   +    K  ANPRN A+G LR+L+P    R  L FF 
Sbjct: 182 PAVLEVRGEIYMPRAAFAAWNARALERNEKLLANPRNGAAGSLRQLDPAVTRRRPLAFFA 241

Query: 241 HGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           + +G+   +   +   + LQ +R  GFPV      A  F G+++Y+  + + R  LPYDI
Sbjct: 242 YSVGEVRGLELPETHSQTLQLLRRYGFPVAPEADTATGFDGLIAYFRRIGARRDALPYDI 301

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYK+D++  Q  +G  AR+PRW ++HKF  ++ ST L  I++QIGRTG  TPVARLE
Sbjct: 302 DGVVYKLDDYDQQTAMGFVARAPRWALAHKFPAQEQSTVLRAIEVQIGRTGAATPVARLE 361

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G ++TNATLHN D I  L           D+RVGD V+V+RAG+VIP+VV +I  
Sbjct: 362 PVQVAGVIVTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVVRVIEA 410

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R P   P++ P+ CP+C S +V++            RC+GGLAC+AQ+ E ++HF SR 
Sbjct: 411 RRPPGTLPWTMPAVCPVCGSELVKE------DDAVTWRCSGGLACAAQRKEAVRHFASRR 464

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI--------------- 524
           A +IEGLG++Q D   +       ++  AD++ L+                         
Sbjct: 465 ALDIEGLGERQADALVE----FGFVQSLADLYALRVEDLVRMKAALDAASSADLLQAVEE 520

Query: 525 ----------------ENILGFG------------------DVSVTNLYDSINKRRNISL 550
                           + + G+                        NL   I+  R  +L
Sbjct: 521 SKGALVLDAAGYAALAQQVPGWRHADFLRRHLAVDLGGKLATKWAENLLAGIDASRATTL 580

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+F+LGI H+G   A++LA +  S          ++            +P +G  +A+
Sbjct: 581 SRFLFALGIPHLGETTAKALAHWLGSLAFVRSTPAVLLQA----------LPDIGGEVAR 630

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQE 668
           AI  F++ P N   V+AL+              +    ++   L+ T  + K+    AQ 
Sbjct: 631 AIATFFEQPGNAAVVDALIAAGIGFADESCPPAALRERLDLAHLLSTLPVDKLGGKSAQR 690

Query: 669 YVTQLG 674
                G
Sbjct: 691 LAATYG 696



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 94/262 (35%), Gaps = 31/262 (11%)

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN-L 538
           A  I  LG+               +R    +  LQ            I  F +      +
Sbjct: 586 ALGIPHLGETTAKALAHWLGSLAFVRSTPAVL-LQALPDIGGEVARAIATFFEQPGNAAV 644

Query: 539 YDSINKR--------------RNI-SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
            D++                 R    L   + +L +  +G + A+ LA  Y +     + 
Sbjct: 645 VDALIAAGIGFADESCPPAALRERLDLAHLLSTLPVDKLGGKSAQRLAATYGTLDALLRA 704

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHE 640
             +              +           V +  +P     +   EA ++ +  +  +  
Sbjct: 705 NESGWTGAGLSAAGAANL-----------VAYLADPAQRQGLLDAEAAMQRLLDAAPQQP 753

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
                 ++ +  V TG+L ++ R  A+  +  LGA V+  +S+KT  ++ G   GSKL+K
Sbjct: 754 TRHGGPLDGQTAVLTGSLTQLTRDAAKARLEALGAKVAGSVSKKTSFVVAGSEAGSKLDK 813

Query: 701 AQQLGVKIMNEEQFLFLLQQYN 722
           AQ+LGV + +E Q L  L ++ 
Sbjct: 814 AQELGVVVWDERQLLTFLAEHE 835


>gi|308189932|ref|YP_003922863.1| DNA ligase (NAD(+)) [Mycoplasma fermentans JER]
 gi|238809881|dbj|BAH69671.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624674|gb|ADN68979.1| DNA ligase (NAD(+)) [Mycoplasma fermentans JER]
          Length = 664

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 207/710 (29%), Positives = 354/710 (49%), Gaps = 50/710 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A++    +K++  L  +++  +  YYQ + P + D EYD   +  + +   +P       
Sbjct: 4   AMNALDIKKKIIELSNKLNQWNKEYYQDNNPSVSDFEYDKALQELEQLEKKYPQFIYV-- 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            N P  K+G   +    KV H  P LSL K ++  ++ K++  I +    +D   I F++
Sbjct: 62  -NSPTQKLGSFADNKFKKVVHQKPMLSLSKAYDYSEIEKYVNNIEKLVPIED---INFSI 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPKIDG  I++ Y  G    A  RGDGH GEDV+  I  I +IP+++  N    +EVRGE
Sbjct: 118 EPKIDGLSISLHYNHGFLNQALTRGDGHEGEDVTENIYQIASIPKII--NYDAELEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249
           V++ K +F  LN+ +I  G KP++NPRNAASG LR+L+PT +  R L  F++ L +  + 
Sbjct: 176 VFLPKAEFQRLNENLIKAGEKPFSNPRNAASGTLRQLDPTIVKNRQLASFLYELVEPQKH 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q + L+  + L  P N   +         +  +    +++ L YD DGLV K++  
Sbjct: 236 NITTQEQALEFFQKLNIPTNPYHKVVEVEELEEA-ISFFAEMKNKLNYDADGLVIKLNNL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +   ++G+ A+ P+  I+ K+  + A + + DI   +GRTG +T VA LEPV +   ++ 
Sbjct: 295 TYWNKMGKTAKFPKHSIAFKYEVETAISTIKDIKTTVGRTGKITYVASLEPVELNQTIVR 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN ++I+ L+           I + D+V + +AGE+IPKV+ ++  +       F 
Sbjct: 355 AATLHNYNFIEDLN-----------ININDQVQIVKAGEIIPKVLALVKKQSKG---VFG 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
               CP C S +V        +      C     C    +  + HF SR + NI GLG  
Sbjct: 401 KTLECPSCGSVLV------EIEDNVDQFCVNK-NCPEMTINAIYHFASRKSLNIVGLGLI 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +  F+K       ++   DIF L + +         +  + ++ V NL  +I K ++ +
Sbjct: 454 TVKDFYKHN----LVKSIEDIFNLHKHKDELL----KLERYAELKVNNLLTNIGKAKDST 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             + +F+LGI+HVG   A+ ++K Y ++     E + +   +         +  +G  I 
Sbjct: 506 FSKVLFALGIKHVGERAAKLISKQYHNFDELICEKDELAKIS--------AINNIGPKIL 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++ E+ +N  N+  +    +  +    +     S ++ N   V TG L    R    + 
Sbjct: 558 DSLKEYLKNEENVKLLRKFDEIFNYQ--KIATVASEKLINLSFVITGKLSN-SRDHYVDL 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   G  VS+ +S KT  ++VG++ GSKL+KA++L + I+NEEQF  +L+
Sbjct: 615 VEANGGKVSSSVSSKTSFLLVGEDAGSKLDKAKKLNIAIINEEQFNEMLK 664


>gi|195941083|ref|ZP_03086465.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 504

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 194/540 (35%), Positives = 310/540 (57%), Gaps = 44/540 (8%)

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGEV++ +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+
Sbjct: 1   MEVRGEVFLPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGV 60

Query: 244 GKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G              L + +  G PV+N V+  ++   ++++Y++++  R TL +DIDG+
Sbjct: 61  GILEGGDLPDTHLGRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGV 120

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV 
Sbjct: 121 VIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQ 180

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G L++NATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER 
Sbjct: 181 VAGVLVSNATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERP 229

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D +   FP+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +
Sbjct: 230 ADTRAIEFPAHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMD 283

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           ++G+G + +D   + E     +  PAD+FTL   + T   ++      G  S  N+ +++
Sbjct: 284 VDGMGDKIIDQLVEKE----YVHTPADLFTLTAGKLTGLDRM------GPKSAQNIVNAL 333

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +N +  RF+++LGIR VG   A  LA Y+ +     +   + +           +VP
Sbjct: 334 EAAKNTTFARFLYALGIREVGEATAAGLAAYFGTLDALEKATIDELQ----------KVP 383

Query: 603 LVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
            VG ++A  +  F+    N   +    E  +   +P +   E+ + S    K +V TG+L
Sbjct: 384 DVGIVVATHVYNFFAEESNREVIGKLLEQGIHWPAPVVVNAEE-IDSPFAGKTVVLTGSL 442

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            ++ R  A+  +  LGA V   +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 443 SQLSRDDAKARLVALGAKVVGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLL 502


>gi|319777211|ref|YP_004136862.1| DNA ligase [Mycoplasma fermentans M64]
 gi|318038286|gb|ADV34485.1| DNA ligase [Mycoplasma fermentans M64]
          Length = 660

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 206/709 (29%), Positives = 353/709 (49%), Gaps = 50/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    +K++  L  +++  +  YYQ + P + D EYD   +  + +   +P        
Sbjct: 1   MNALDIKKKIIELSNKLNQWNKEYYQDNNPSVSDFEYDKALQELEQLEKKYPQFIYV--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  K+G   +    KV H  P LSL K ++  ++ K++  I +    +D   I F++E
Sbjct: 58  NSPTQKLGSFADNKFKKVVHQKPMLSLSKAYDYSEIEKYVNNIEKLVPIED---INFSIE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I++ Y  G    A  RGDGH GEDV+  I  I +IP+++  N    +EVRGEV
Sbjct: 115 PKIDGLSISLHYNHGFLNQALTRGDGHEGEDVTENIYQIASIPKII--NYDAELEVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K +F  LN+ +I  G KP++NPRNAASG LR+L+PT +  R L  F++ L +  +  
Sbjct: 173 FLPKAEFQRLNENLIKAGEKPFSNPRNAASGTLRQLDPTIVKNRQLASFLYELVEPQKHN 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q + L+  + L  P N   +         +  +    +++ L YD DGLV K++  +
Sbjct: 233 ITTQEQALEFFQKLNIPTNPYHKVVEVEELEEA-ISFFAEMKNKLNYDADGLVIKLNNLT 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
              ++G+ A+ P+  I+ K+  + A + + DI   +GRTG +T VA LEPV +   ++  
Sbjct: 292 YWNKMGKTAKFPKHSIAFKYEVETAISTIKDIKTTVGRTGKITYVASLEPVELNQTIVRA 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN ++I+ L+           I + D+V + +AGE+IPKV+ ++  +       F  
Sbjct: 352 ATLHNYNFIEDLN-----------ININDQVQIVKAGEIIPKVLALVKKQSKG---VFGK 397

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP C S +V        +      C     C    +  + HF SR + NI GLG   
Sbjct: 398 TLECPSCGSVLV------EIEDNVDQFCVNK-NCPEMTINAIYHFASRKSLNIVGLGLIT 450

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F+K       ++   DIF L + +         +  + ++ V NL  +I K ++ + 
Sbjct: 451 VKDFYKHN----LVKSIEDIFNLHKHKDELL----KLERYAELKVNNLLTNIGKAKDSTF 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + +F+LGI+HVG   A+ ++K Y ++     E + +   +         +  +G  I  
Sbjct: 503 SKVLFALGIKHVGERAAKLISKQYHNFDELICEKDELAKIS--------AINNIGPKILD 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ E+ +N  N+  +    +  +    +     S ++ N   V TG L    R    + V
Sbjct: 555 SLKEYLKNEENVKLLRKFDEIFNYQ--KIATVASEKLINLSFVITGKLSN-SRDHYVDLV 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  VS+ +S KT  ++VG++ GSKL+KA++L + I+NEEQF  +L+
Sbjct: 612 EANGGKVSSSVSSKTSFLLVGEDAGSKLDKAKKLNIAIINEEQFNEMLK 660


>gi|330837729|ref|YP_004412370.1| DNA ligase [Spirochaeta coccoides DSM 17374]
 gi|329749632|gb|AEC02988.1| DNA ligase [Spirochaeta coccoides DSM 17374]
          Length = 716

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 213/732 (29%), Positives = 339/732 (46%), Gaps = 71/732 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + E A + ++ L + +      YY   +P + D EYD L     A+  A PD+  +   +
Sbjct: 3   TQETAVRRMAELSRILLDAQHEYYVLGRPSMSDKEYDTLMDELAALEAAHPDVKEA---D 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G ++     +V HSIP LSL+K ++ E +  ++ +       K D  + F +E 
Sbjct: 60  SPTQRVGSDLTSDFPEVRHSIPVLSLDKAYSAEAIVSWMNKA----GLKADTGLSFIVEE 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  + + YEKG  V A  RG+G  G DV+A IR I  +P  LS   P  I VRGEVY
Sbjct: 116 KIDGVSMVLYYEKGILVRAVTRGNGTVGNDVTANIRTIAAVPLRLSE--PLDIAVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVH-GLGKTSEIF 250
           + K  F  LN  M      PYANPRN A+G +RR+  ++  R  L  FV+          
Sbjct: 174 LPKESFSVLNKTM----EIPYANPRNLAAGTIRRIKSSETARVPLTIFVYEAYFAGDATL 229

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANT--------------------FHGIVSYYNEMKS 290
                E+L  +  LGF VN  +    +                    F  +  Y + +  
Sbjct: 230 YPNHVELLAALVRLGFRVNPHLGVFASGRQEAEALLSASGVQGFSGAFDDLAGYISGVTR 289

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  LPY+IDGLV KV++ +L+   G     PRW I++KF    A T + DID+Q+GRTG
Sbjct: 290 ERGNLPYEIDGLVVKVNDLALRDVFGYTGHHPRWAIAYKFESPAAQTVVQDIDVQVGRTG 349

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TP+AR+  V IGG++++N TLHN+DYI  L+           + +GD V V + G+VI
Sbjct: 350 RITPMARVRSVPIGGSVVSNVTLHNQDYIDLLE-----------LAIGDTVEVSKRGDVI 398

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P V  ++  +       +  P+ CP C S +V           A   C     C AQ   
Sbjct: 399 PAVERVV-EKNEEGNTTWRIPAICPSCGSTLVIR--------GAHTFCPNASGCPAQVGG 449

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
           R++ FV +D  +I   G + +           ++    DI+TL  R+           GF
Sbjct: 450 RIQFFVGKDGMDIANFGPETVTVLRNIN----ALSDIPDIYTLDYRRVLD-----GQPGF 500

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           G   ++ +   +   RN      + +LG+   G +    L     S ++  Q ++ +  H
Sbjct: 501 GKKKISLIVTGVEDSRNRPFRVVLSALGLPDFGRKAVDQLLDA-GSIRSMEQLLHIVDTH 559

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIE 648
           + D   S   +P +G+ +A  ++E    P     + AL +          +  +V     
Sbjct: 560 DMDTLTS---IPQIGEKMAMTLIESLSAPEMRARIHALGEAGLSFEEEASQVSDVPQIFA 616

Query: 649 NKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
            +    TG+ +    R KA   V + G  V++ ++ KT  ++ G   GSKL +AQ+ G +
Sbjct: 617 GQTWCVTGSFEHFSPREKAMVEVKKRGGRVTSSVTGKTTHLLAGGGAGSKLSQAQKAGAR 676

Query: 708 IMNEEQFLFLLQ 719
           I++E++FL +L 
Sbjct: 677 IVSEDEFLGMLD 688


>gi|193216704|ref|YP_001999946.1| DNA ligase [Mycoplasma arthritidis 158L3-1]
 gi|254781372|sp|B3PMJ0|DNLJ_MYCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193002027|gb|ACF07242.1| DNA ligase [Mycoplasma arthritidis 158L3-1]
          Length = 665

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 217/706 (30%), Positives = 345/706 (48%), Gaps = 49/706 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-PNG 73
           E+ R E+  L+ +I+  D+ YY    P++ D+ YD    +   +   +      E+  N 
Sbjct: 5   EKIRNEVFELQAKINEWDNAYYNLDAPLVEDAIYDREILKLKKLEEQYSSYFSFEELANS 64

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  KI  + +    KVTH  P LSL K +  E+++KFI  I +        +  F LEPK
Sbjct: 65  PTQKINAKSSDLFKKVTHDSPMLSLNKAYTEEEIQKFIDNIKKVTP-----TFSFFLEPK 119

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+I+Y  G+   A  RGDG  GEDV+  I+ I  IP+ ++   P  +EVRGEVY+
Sbjct: 120 IDGLSISIKYRNGQLFQAVTRGDGLVGEDVTENIKQIKNIPKEIAYQKP--LEVRGEVYL 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
           + ++F  +N       +   ANPRNAA+G LR+L+   +  R L+ F++ +    +    
Sbjct: 178 ALSEFEKINLNFQKENKPLMANPRNAAAGTLRQLDKEIVANRNLSAFLYNIVAPEDHNIF 237

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E    ++ LGF V      A     I SY    K ++ TL Y+ DG+V K++E    
Sbjct: 238 TILEARDFLKNLGFSVTKEATYAKDLSEINSYIENFKHLKKTLDYETDGVVIKLNELQHY 297

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG   + P   I+ K+     +T L +I I +GRTG++T  A LEPV + G+ IT AT
Sbjct: 298 DALGATNKFPHSAIAFKYEPNTTTTVLKNIFITVGRTGLVTYNAELEPVILSGSCITFAT 357

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N  YIK L            +  GD V +K+AGE+IP V+ ++  +   +   F+   
Sbjct: 358 LNNYQYIKDL-----------KLNKGDLVYIKKAGEIIPCVIGLVNKK--HEETEFNKFL 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S ++          +    C+    C   + +++ HF S+ A  +  LG++ +D
Sbjct: 405 KCPYCNSDLI------ETDTLLEQYCSNE-NCPEIRRKKIIHFASKKAMELNSLGEKNID 457

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         +    D + L+ ++     KI ++  FG  SV N+  SI + +  SL+R
Sbjct: 458 VFINE----GLLENVIDFYKLKEKK----DKIMSLERFGTKSVMNILKSIEESKKNSLDR 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF L I+H+G+++A  LA   L   NF           + D+ SLI    +G+ I  ++
Sbjct: 510 VIFGLSIKHIGSKVAYFLASKILKLSNFL----------DFDFDSLISYNEIGEKIISSL 559

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             +     N   V+ LL      +       +        V TGTL +  R   ++ + +
Sbjct: 560 KNWVAKEENKNLVKDLLDN-DVDLEFIATKKTERFAQLSFVITGTLSQP-RSHFEKLIKE 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G  +S+ +S KT  ++VG++ GSKL KA+ L VKI++EE F  LL
Sbjct: 618 NGGSISSAVSAKTSYLLVGEDAGSKLAKARALNVKILDEEAFNELL 663


>gi|269114974|ref|YP_003302737.1| NAD(+)-dependent DNA ligase [Mycoplasma hominis]
 gi|268322599|emb|CAX37334.1| NAD(+)-dependent DNA ligase [Mycoplasma hominis ATCC 23114]
          Length = 668

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 225/710 (31%), Positives = 362/710 (50%), Gaps = 49/710 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-P 71
            IE+ RKE+  L+ +IS  D+ YY    P + D  YD    +  A+   +      E+  
Sbjct: 6   DIEKIRKEIFDLQAKISAWDNAYYNLDSPEVPDEIYDVEFNKLKALEEKYASFFSDEELK 65

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  KI    +    KV H  P LSL K +++++++KFI  I +       +   F +E
Sbjct: 66  NSPTRKINALASDLFKKVKHKRPMLSLNKAYSLDEIQKFIDNIKKI-----TSDFSFFIE 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I+I YE GK V A  RGDG +GEDV+A +  +  IP+ +     E +EVRGEV
Sbjct: 121 PKIDGLSISIIYEDGKLVRAITRGDGITGEDVTANVVQMSCIPKTIE--YKESLEVRGEV 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y++ +DF  LN ++    +   ANPRNAA+G LR+LN   I  R L+ F++ +    +  
Sbjct: 179 YLAISDFEKLNLKLGQENKNKLANPRNAAAGTLRQLNSQIIKERNLSAFLYYVVDPLQHN 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E  + ++  GFPV + V+ ANT   I  Y    K+ +  + Y+ DG+V K++E  
Sbjct: 239 IKTMQEEHEFLKTYGFPVTHEVQHANTLQDIEEYIRNFKNQKLLIDYETDGVVIKLNEVQ 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
              +LG  A+ P + I+ K+     +T +  I   +GRTG++T  A LEPV I G+L++ 
Sbjct: 299 YFDKLGSTAKFPHYAIAFKYEPNVETTTIKRIYATVGRTGLVTYNAELEPVEISGSLVSF 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N  YIK L+           +   D V +K+AGE+IP V+ +I  ++  D   F  
Sbjct: 359 ATLNNFQYIKDLN-----------LNENDLVYIKKAGEIIPCVIGLISGKKEID--HFQK 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
             FCP C +++V               C+    C   Q  +L HF S+D  +I  +G++ 
Sbjct: 406 VEFCPYCHNKLVDSETGLE------QFCSND-QCPEIQRRKLIHFCSKDGLDINTMGERN 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D F K+      I  P DIF L+ ++Q        +   G+ S+ N+  SI++ +N  L
Sbjct: 459 IDLFLKNS----LISNPIDIFNLKNKKQDLL----KLNRMGEKSIENILISIDECKNKPL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + I +L I  +G ++A+ +A    S  N            N D+  LI    +GD I  
Sbjct: 511 YKMISALSIPLIGVKLAKFVASKIKSLHNLL----------NYDFSQLIDYHEIGDKIIN 560

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I+ +  N  N   VE  +  +   +    +++++ +ENK  V TGTL    R   +  +
Sbjct: 561 SIISWISNDFNKKLVED-IINLGYDLKDENESITNLLENKSFVITGTL-GHPRSYFERLI 618

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + G ++ + +S KT+ ++ G+N GSKL+KA +L + I+ EE    ++ Q
Sbjct: 619 EKNGGLIHSSISSKTNYLLAGENAGSKLQKANKLNITIITEEDLFKMIGQ 668


>gi|237751760|ref|ZP_04582240.1| NAD-dependent DNA ligase LigA [Helicobacter bilis ATCC 43879]
 gi|229373126|gb|EEO23517.1| NAD-dependent DNA ligase LigA [Helicobacter bilis ATCC 43879]
          Length = 686

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 205/737 (27%), Positives = 330/737 (44%), Gaps = 83/737 (11%)

Query: 14  IEQAR--KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++ +  +E     + ++ +   YY+   PI  D EYD L +          D       
Sbjct: 1   MQEIKSHEEYLESIKTLNLYAKHYYELDDPIASDFEYDMLYKAVKLYEENNIDKIAK--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKF-------ITRIYR-------- 116
           + P  +IG ++     K  H     SLE I+N  DL ++       I R+ +        
Sbjct: 58  DSPTQRIGDKILKDFSKNKHKKRMWSLEDIFNPSDLDEWLTKLSNAIARVQKTTLSPTLF 117

Query: 117 --FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
               Q    N++ F + PK DG  + + YE G    A  RGDG  GE V+   + + ++P
Sbjct: 118 DTETQIDSINNLAFCISPKYDGMSLNLLYENGILQSATTRGDGEIGEVVTQNAKTLHSLP 177

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DIT 233
             +       IE+RGEV +SK +F  LN E     +  +ANPRNAA+G +R+L+      
Sbjct: 178 HTIPFK--GSIEIRGEVVLSKENFARLNKEQERNNKALFANPRNAAAGSMRQLDSNLTRE 235

Query: 234 RYLNFFVHGLGKTSEIFAK--------GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYY 285
           R L+F   G+G       +        G Y+ML  +   GF     + +      I   Y
Sbjct: 236 RNLSFVAWGIGSVDMKELEKYAKRSNLGFYDMLMLLPEFGFSPFRYLERV-NAESIEREY 294

Query: 286 NEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345
            ++ + R   P+ +DG V  +D+ +LQ +LG   ++PR+  ++KF   +    +  I  Q
Sbjct: 295 QKILNDRDNYPFMLDGFVIVLDDLALQDKLGFTQKAPRFACAYKFPATEVVINIESITPQ 354

Query: 346 IGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405
           +GRTGI+TPVA  +P  + GA I+ ATLHN   I             +DIR+ D  L+ R
Sbjct: 355 VGRTGIITPVANFKPTPLDGAFISRATLHNYKEI-----------DQKDIRIRDYCLLVR 403

Query: 406 AGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACS 465
           +G+VIPK+  ++   R  D    + P+ CPIC   +  +             CT    C 
Sbjct: 404 SGDVIPKITKVLHERRKGDEIKIAKPTHCPICSHELSYE--------DIYIYCTNP-NCD 454

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525
           A    +L HF S+   +I+GLG   ++    +      I+   DI++L+           
Sbjct: 455 AIIKAKLIHFASKKCMDIDGLGSSIIELLVDN----GVIKECKDIYSLKE------EDFL 504

Query: 526 NILGFGDVSVTNLYDSINKRR-NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
              GF +    NL ++I     N    RFI +LGI H+G   ++ LA Y   Y+ F  +I
Sbjct: 505 RFEGFKEKKAQNLINAIKDSIENREFWRFIHALGILHIGEVASKKLASY--GYEIFDYDI 562

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKN 642
             +             +   G  +AQ+  +F     N   +  + + + P   +   + N
Sbjct: 563 EKL-----------QEIEGFGKDMAQSFYDF--CIHNKDFINEMQEILKPQLQVKTTQIN 609

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
             S    K  V TGT   + R   +  +  LGA VS+ +S KTD +I G+  GSKL KAQ
Sbjct: 610 TDSIFYQKTCVITGTF-ALSRDSIKAKLESLGAKVSSSISTKTDFLIAGEKAGSKLTKAQ 668

Query: 703 QLGVKIMNEEQFLFLLQ 719
           +LG+KI+   + + +L+
Sbjct: 669 ELGIKIIESSELMQILE 685


>gi|160895209|ref|ZP_02075981.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50]
 gi|156863088|gb|EDO56519.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50]
          Length = 653

 Score =  578 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 187/707 (26%), Positives = 323/707 (45%), Gaps = 64/707 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R  +  L ++++     YYQ    I+ + EYDAL      +      +      N P 
Sbjct: 2   EKRDRIKELVEKLNEASKKYYQEDTEIMSNLEYDALYDELVELEKETGIVMS----NSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G E+   L K  H  P LSL+K  ++E L  ++             +    +  K+D
Sbjct: 58  VHVGYEIVSELPKEVHEHPMLSLDKTKSVEALAAWL------------GTHQGVISWKLD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE G  V A  RG+G  GE ++   R    IP+ +       + +RGE  I  
Sbjct: 106 GLTVVLTYENGTLVKAVTRGNGLEGEVITNNARVFANIPKEI--PYKGKLTIRGEAVIKY 163

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
           +DF  +N+++     K Y NPRN  SG +R+LN      R ++FF   L    ++  K  
Sbjct: 164 SDFEKINEQIADADAK-YKNPRNLCSGSVRQLNNRITKERNVHFFAFNLVDGEDVDFKNS 222

Query: 255 YEM-LQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           +   L  +   GF V       A+     V+ + E         +  DGLV  +++ +  
Sbjct: 223 FSYELDWLEQQGFDVVEHYLIDADKLPERVAQFAEQIEK---NDFPSDGLVLVLEDLAYG 279

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LG  A+ PR  ++ K+A++QA T L  ++    RTG++ PVA  +PV++ G  +  A+
Sbjct: 280 KSLGRTAKFPRDSMAFKWADEQAVTHLQYVEWSPSRTGLINPVAVFDPVSLEGTTVGRAS 339

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +HN   ++ L            + +GD + V +A  +IP++      E H  +     P 
Sbjct: 340 IHNVSILRSLQ-----------LGIGDEISVYKANMIIPQI-----AENHTRSGNVPIPE 383

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C          +    V    CT    C A++L+   HFVSR+A NI+GL +  +D
Sbjct: 384 SCPACGGLTKIVTEGEGVDQVETLYCTNEF-CPAKKLKSFAHFVSRNAMNIDGLSEATID 442

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F +       +    D++ + R +     +I  + GFG+ S   L  +++  R+ ++ R
Sbjct: 443 KFIEQ----GYLDHLDDLYHMNRHE----EEIVELEGFGEKSYAKLIQAVDTSRHTTMNR 494

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F++ LGI  VG   A+ + K++          NN+    + D  +   +  +G +IA+ I
Sbjct: 495 FVYGLGIPGVGDATAKLICKHFK---------NNLDQIMHADVEAYTEIDGIGTVIAEEI 545

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVT 671
           V +++NP N   ++ LL E+        + V   +     V TG+L++   R + ++Y+ 
Sbjct: 546 VRYFKNPSNCAIIDKLLHEL--EFEAETETVPQTLAGITFVITGSLEQFANRDEMKQYIE 603

Query: 672 QLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
             G  V+  +S KT  ++  D  +  SK +KAQ LG+ I++E QFL 
Sbjct: 604 DRGGKVAGSVSSKTGYLVNNDVTSTSSKNKKAQSLGIPIISETQFLE 650


>gi|262341099|ref|YP_003283954.1| DNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272436|gb|ACY40344.1| DNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 681

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 202/704 (28%), Positives = 343/704 (48%), Gaps = 54/704 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L +E+S ++  YY +    I D  +D        +   +P+     DP  P  KIG E+
Sbjct: 27  QLRKELSKYNYQYYNFDTSDISDFHFDKKLEELFFLEKKYPEF---YDPTSPTIKIGAEI 83

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           +       H     SL+K ++ ++L  +  +I +       ++  F  E K DG  I + 
Sbjct: 84  HEPSTVFYHKYKMYSLQKTYSKKELIIWKKKISKSI-----HTFSFVCELKYDGVSINLI 138

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLAL 201
           Y+ G    A  RG+G  GEDV+  I+ I  +P  L  N  P  +E+RGEV+++  +F+ +
Sbjct: 139 YKNGFLTNAGTRGNGEKGEDVTENIKTIKHVPLKLRGNNYPAYLEIRGEVFLTTKNFIEI 198

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           N + I  G+ PYANPRN ASG L+  +   +  R L      +     +    QYE L+ 
Sbjct: 199 NKKRIKSGKTPYANPRNTASGTLKIQDRKKVRQRNLFCIAFHVV-GKNLPFDTQYESLKH 257

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           ++  GF +    R       +  + +     +  LPY IDG+V KV+E+  Q  LG   +
Sbjct: 258 IKNWGFQIPETARFCKNMEEVFHFIDFWNLWKDKLPYQIDGIVIKVNEYQKQSLLGFTNK 317

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
            PRW I++KF +K + T+LL +  Q+GRTGI+TPVA + P+ I G +I    L+N+ +I+
Sbjct: 318 YPRWAIAYKFRQKLSETKLLSLTFQVGRTGIVTPVANVVPILISGTIIKRVALYNDSFIQ 377

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            +            I  GD +L+++ G +IPKV  I + +R   A P  F   CP C S 
Sbjct: 378 KM-----------GIYHGDTLLLEKGGNIIPKVTRINIKKRSSQAFPVFFLKKCPSCNSV 426

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + ++             CT    C +Q++E+++HFVS  A NI+ +G + +   +K    
Sbjct: 427 LTKNNE--------LFYCTN-QNCFSQRIEKIRHFVSVKAMNIQKIGNEMIKKLYKKGF- 476

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
                    +++     +    ++  I G  +    ++ ++I K +     R +++LGIR
Sbjct: 477 ---------LYSFYNLYELKKEELLQIDGVKEKLADSIINNIKKSKENPFSRVLYALGIR 527

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG +I++ L K +L   +              ++  LI +  +G  I ++I+ ++    
Sbjct: 528 HVGEDISKKLTKQFLDINSLMHA----------NYDHLISISGIGKKITESIITYFSIYE 577

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           N  AV+ +L +      +  K +SS +E K  VFTG L  + RHKAQ  V  LG  V   
Sbjct: 578 NRHAVQ-MLIKYGLHFSKCSKKLSS-LEGKSFVFTGKLSCMTRHKAQNMVENLGGKVYNT 635

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYNT 723
           ++ + + I++G N GSK +K+ +   V+I+ E  FL +L++   
Sbjct: 636 VNNQINFIVIGKNFGSKFKKSMKKNHVQILTENLFLDMLKKAKK 679


>gi|317499031|ref|ZP_07957312.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893681|gb|EFV15882.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 651

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 199/704 (28%), Positives = 320/704 (45%), Gaps = 65/704 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L   ++     YYQ +K ++ + EYD +      +         +   N P   +G
Sbjct: 6   RMKELIHTLNEAGKAYYQQNKEVMSNLEYDKMYDELLELEKK----TNTVLSNSPTIHVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            E+   L K  H  P LSL+K    + L  ++            N     L  K+DG  I
Sbjct: 62  YELMTVLEKEAHPSPMLSLDKTKEPDQLATWL------------NGQEGILSWKLDGLTI 109

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + YE GK + A  RG+G  GE V+   R    +PR ++      + +RGE  I  +DF 
Sbjct: 110 VLTYEHGKLLKAVTRGNGEVGEVVTNNARVFENVPRRIA--YQGTLVIRGEAIIPYSDFY 167

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM- 257
            +N+E+  V  + Y NPRN  SG +R+LN      R+++F+   +     +     +E  
Sbjct: 168 KMNEEIEDVDSQ-YKNPRNLCSGSVRQLNNEITAKRHVHFYAFSVSDVEGMDFDNSFEKK 226

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  +  LGF V   +R   T   I     +            DGLV   D+ +  K LG 
Sbjct: 227 LDWVASLGFDVVEHIRV--TEDTIRGEIEKFSKKIEQFDLPSDGLVLVYDDLAYGKSLGR 284

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+ PR  I+ K+A++ A T L +I+    RTG++ PVA  EPV + G  ++ A+LHN  
Sbjct: 285 TAKFPRDSIAFKWADETAETTLTEIEWSPSRTGLINPVAIFEPVELEGTTVSRASLHNIS 344

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            ++ L            + +GD ++V +A  +IP++      E    +     P  CP C
Sbjct: 345 VMEELQ-----------LGIGDEIVVYKANMIIPQL-----AENKTKSGNIEIPHTCPAC 388

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
                 +       LV    CT    CSA++++   HFVSRDA N++GL +  L      
Sbjct: 389 GGETKIEDENGIRTLV----CTNEF-CSAKKIKSFSHFVSRDAMNVDGLSEATLQKMID- 442

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +    D+FTL+  ++        + GFG+ S  NL ++IN  +  +L  FI+SL
Sbjct: 443 ---VGLLNEIYDLFTLKDHKEEILE----LEGFGEKSYQNLINAINDSKQPALANFIYSL 495

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG   A+ + K++           +  A    D    I +  +G +IA+A+V ++ 
Sbjct: 496 GIPNVGLSNAKLICKHFK---------EDFNAIREADAEDFIAIDQIGPMIAEAMVSYFH 546

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAV 676
            P N   +E LL+ V     + E      +E K  V TG+L     R + +E + Q+G  
Sbjct: 547 TPHNQKILEQLLQYVQFE-KKEESKTEQILEGKTFVVTGSLDHFDNRKQLKEEIEQMGGK 605

Query: 677 VSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLL 718
           V+  +S+KTD +I  D     SK +KA +L + I++EE FL L+
Sbjct: 606 VTGSVSKKTDYLINNDKMSQSSKNKKAMELNIPILSEEDFLNLI 649


>gi|325278944|ref|YP_004251486.1| DNA ligase [Odoribacter splanchnicus DSM 20712]
 gi|324310753|gb|ADY31306.1| DNA ligase [Odoribacter splanchnicus DSM 20712]
          Length = 829

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 186/616 (30%), Positives = 303/616 (49%), Gaps = 58/616 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  +  L + + YH+  YY  + P I D E+D L    + +   +P+     DPN 
Sbjct: 1   MQTEKDRILELRKALEYHNYKYYIENAPEISDREFDGLMHDLEKLEEKYPE---MYDPNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G ++N    +V H  P LSL   ++ E+LR F  R+ +    +    + +  E K
Sbjct: 58  PTQRVGRDINQEFTQVAHKYPMLSLGNTYSEEELRDFDQRVRKVVGDR----VQYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DGT I++ Y  G+   A  RGDG  G+DV+A +R I T+P  L  + P   E+RGE+ +
Sbjct: 114 YDGTSISLTYVNGELTQAVTRGDGVKGDDVTANVRTIRTVPLKLRGDYPPEFEIRGEILM 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
             + F  LN E    G   +ANPRNAA+G L+  N + +  R+L+ F++ +       A+
Sbjct: 174 PFSVFNRLNQEKAEAGEPLFANPRNAAAGTLKLQNSSLVAKRHLDCFLYYIP-GEVTPAE 232

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             Y  L K +  GF +   +  A++F  + ++  +    R+ LP  IDG+V KV++  +Q
Sbjct: 233 THYGNLMKAKEWGFHMPPYIHLADSFEEVWAFITKWDKERTGLPVPIDGIVIKVNDIGMQ 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG  A+SPRW I++KF  +Q  T L+D+  Q+GRTG +TPVA LEPV+I G  +  A+
Sbjct: 293 HLLGYTAKSPRWAIAYKFKAEQVETPLIDVVYQVGRTGAVTPVANLEPVHIAGTTVKRAS 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I  L           D+   D V V++ GE+IPK+V +   +R   A    F +
Sbjct: 353 LHNADIISSL-----------DLHEHDTVYVEKGGEIIPKIVGVDRAKRREGAAAVEFIT 401

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C ++++R          A H C     C  Q   +++HFVSR A NIEG+G++ ++
Sbjct: 402 CCPECGTKLIRIEGE------ANHYCPNEDHCPPQIAGKIEHFVSRKAMNIEGMGEETIE 455

Query: 493 FFFKSEDPAFSIRIPADIFTL--QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                      IR  ADI+ L  +R +     KI     F   S             I L
Sbjct: 456 LLLGKR----LIRDVADIYGLPAKREELIGLEKIVYPESFEMTS-------------IPL 498

Query: 551 ERFIFS--LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            + I+   +GI+++ +  A +LA ++ S + +A      ++    D           +  
Sbjct: 499 AKVIYGFEIGIKNISSRNAETLAGHFGSLEAYAAASKQELSAVIGD-----------ETT 547

Query: 609 AQAIVEFYQNPRNICA 624
              I+++++ P N   
Sbjct: 548 VNRILDYFRTPFNQTV 563



 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 11/193 (5%)

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           +    + SV NL   I K +       + +LGIR++G   +R+LAK +       +    
Sbjct: 648 VYRMQEKSVDNLIAGIEKSKTAGFPALLNALGIRYIGETASRNLAKSFRELTRLMEA--- 704

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                  D+  L  V  +G+ +A +I+ ++    N   V+ L+     +     +  +  
Sbjct: 705 -------DFEQLTEVEDIGEQMANSILRYFGKEENRQLVKRLIDYGVEAEIGETETGNDS 757

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  +  V TGTL +  R   +E +   G  VS  +S KT  ++ G+N GSKL+KA++LG 
Sbjct: 758 LTGQTFVITGTLTRP-REYFKELILNAGGKVSDSVSAKTAYLLAGENAGSKLKKAEKLGT 816

Query: 707 KIMNEEQFLFLLQ 719
           +I++EE+F  LL+
Sbjct: 817 RIISEEEFYELLK 829


>gi|294790698|ref|ZP_06755856.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304]
 gi|294458595|gb|EFG26948.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304]
          Length = 815

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 201/814 (24%), Positives = 353/814 (43%), Gaps = 119/814 (14%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           +K + + +  L   QA    + +   +      YY    PI  D+ YD   +    +   
Sbjct: 18  QKLKDLNVADLDTSQAAHLWAKVASWVEDDQLAYYVNDSPISSDAAYDERMKTLQRLEAH 77

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP L   ++P    +++GG  +     V H  P +SL+ ++++++L+ +   +    +  
Sbjct: 78  FPQL---DNPQSLTHRVGGTFSNDFASVRHPSPMMSLDDVFSLQELKSWYQGVRDDLEWP 134

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--- 178
               +  T E KIDG  + + Y KG       RGDG  GED++  +R I +IP  L+   
Sbjct: 135 SSQPLPMTCEVKIDGLALNLIYRKGILEQGLTRGDGIVGEDITMNVRTISSIPTQLTGKA 194

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
            +IP+++E+RGEV++  +DF  LND+    G+ P+ANPRNAA+G LR+ +P    +R+L+
Sbjct: 195 EDIPDLVEIRGEVFMRFDDFTRLNDQAEREGKAPFANPRNAAAGSLRQKDPRITASRHLS 254

Query: 238 FFVHGLGK------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           F+ HG+G       ++    + Q +        G PV+   RQA +F  I    +     
Sbjct: 255 FYAHGIGSLVWPQGSNHPSIERQSQAYDLYAAWGIPVSTHTRQARSFTDITDMISYYGEH 314

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R ++ + +DG+V K+D+ +LQ++LG  AR+PRW  ++K+  ++ +T L+DI +Q+GRTG 
Sbjct: 315 RYSIEHALDGIVVKIDDLALQRRLGSTARAPRWATAYKYPPEEVNTDLIDITVQVGRTGR 374

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVA L+PV + G+ ++  TLHN   ++            + I +GD V+V++AG+VIP
Sbjct: 375 VTPVAHLKPVKVAGSTVSRTTLHNAYEVER-----------KGILIGDLVVVRKAGDVIP 423

Query: 412 KVVDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           ++V  +V  R       +PF  P  CP C + +         +     RC    +C AQ 
Sbjct: 424 ELVGPVVAARPDRKSQLRPFLMPKTCPSCGALL-----APEKEGDKDIRCPNVESCPAQL 478

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSE------------------------------ 498
             R+ H  SR AF+IE LG+Q        E                              
Sbjct: 479 ANRVLHLASRQAFDIEHLGEQSALALTNPENNRPDSVAEYYPDKKEILLKPGQETPDYQP 538

Query: 499 --------DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                        +   AD+F+L+            I    +VS      +    +    
Sbjct: 539 PEGLQLPDPQQPVLTSEADLFSLKPEDLRQVRTWHEIP-LVEVSYVEDPQTGTTHKIHR- 596

Query: 551 ERFIFSLGIRHVG----AEIARSLAKYYLSYQNFA--QEINNIIAHNNDDWLSLIRVPLV 604
                 L  +        +  + ++    S    A  +E +     +    L  + +  V
Sbjct: 597 NVGGSGLWTQQPAFFNLPKKGQKISDAQPSRTTLAMFEEFDKAKRADLWRVLVALSIRHV 656

Query: 605 GDIIAQAIVEFYQNPRNI-------------------CAVEALLKEV------------- 632
           G   A+ +   ++  + +                    ++E                   
Sbjct: 657 GAPTARLLSRKFKTLQALSQASVEDLLQVDGVGEEIAQSIERWFSHARDPQDWRGKILRS 716

Query: 633 SPSIGRHEKNVSSEIENKKLVFTG-------TLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
             + G  ++        +    TG       TL+   R  A+E + + G   S  +S+KT
Sbjct: 717 WTAAGIGQQAAEENTAEQT--LTGKTVVVTGTLEDFSRESAKEAIEERGGKASGSVSKKT 774

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             ++VG + GSK  KAQ+LG+ +++E+QF  LL+
Sbjct: 775 SYVVVGASAGSKAVKAQELGIPMLDEDQFKALLE 808


>gi|325972726|ref|YP_004248917.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy]
 gi|324027964|gb|ADY14723.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy]
          Length = 696

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 201/736 (27%), Positives = 351/736 (47%), Gaps = 75/736 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +   E+ SL ++++ +   YY  ++P++ D EYD L  R  A+   +P L  +   + 
Sbjct: 1   MNELEHEIHSLVEQLASYQKAYYVDNRPLVSDLEYDRLFDRLVALETQYPHLKLA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +++ +L +V H+IP LSL+K ++  ++  +I +     + K    +   +E K
Sbjct: 58  PTQRVGSDLDSALVEVAHTIPVLSLDKAYSDGEMLSWIEKT----ELKIGEEVGIVIEEK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I + YE G    A  RG+G  G DV+A ++ I +IP  L L + E + VRGE+Y+
Sbjct: 114 IDGISIVLYYEDGLLKRAVTRGNGMVGNDVTANVKTIASIP--LRLPVKESLAVRGEIYL 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAK 252
            K  F  LN +M      P+ANPRN A+G +RR+  +++ +  L  FV+  G   E+   
Sbjct: 172 PKETFAKLNAQM----EVPFANPRNLAAGTIRRIKSSEVAKVPLQIFVYE-GFWKEVVHT 226

Query: 253 GQYEMLQKMRCLGFPVNNGVRQA--------------------NTFHGIVSYYNEMKSIR 292
              ++L  +   GF +N  +                        +F  + SY  +    R
Sbjct: 227 DHLQILSTLASYGFRLNPNLGYFAKDASQARQALMDAQLSGFGGSFSDLASYIQDHTQKR 286

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
           ++L Y+IDGLV KV+  S ++ LG     PRW +++KF   QA T +  ID+Q+GRTG +
Sbjct: 287 ASLGYEIDGLVAKVNSLSGREMLGYTGHHPRWAMAYKFESPQAQTVVQAIDVQVGRTGRV 346

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPVAR+ PV + G+ I+N TLHN+DYI  L+           + +GD V + R G+VIP 
Sbjct: 347 TPVARVVPVQVAGSTISNITLHNQDYINMLE-----------LGLGDTVEISRRGDVIPA 395

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
           V  +I  +       +  P+ CPIC S +         +   AH     ++C AQ   R+
Sbjct: 396 VERVI-EKNESSQGIYHMPTRCPICDSTL---------ESRGAHTFCPNISCPAQIRGRI 445

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532
           + F+ ++  +I+  G +              ++   DI+ +  R+  S     +  GFG+
Sbjct: 446 EFFIGKEGMDIDNFGPETAAALID----LGYLKDIDDIYRIDYRKALS-----DQAGFGE 496

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
             +  +   + K +     + + +LG+  +G + A  L    ++      +I      N 
Sbjct: 497 KKIRLIEGGVQKSKEQPFRKVLVALGLPELGKKGAELLLANGITSMEILLDI-----ANR 551

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENK 650
            D   L  +  +G+ IA+  +E    P     +  L           +  + +      +
Sbjct: 552 GDVQRLTSIKQIGEKIARLYIEALCEPAMQQRIARLASLGLAMAEGEQQLQKLDDSFSGQ 611

Query: 651 KLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
               TG+ +    R  A + V + G    + ++ KT  ++ G+  GSKLE A+ L V+++
Sbjct: 612 VWCVTGSFEHFNPRSLAMDEVVKRGGRTVSSVTSKTTHLLAGEGGGSKLETARSLKVQVV 671

Query: 710 NEEQFLFLL--QQYNT 723
           +E+ FL LL  +Q+N 
Sbjct: 672 DEQTFLTLLKSKQHNE 687


>gi|167766753|ref|ZP_02438806.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1]
 gi|167711507|gb|EDS22086.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1]
          Length = 651

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 198/706 (28%), Positives = 321/706 (45%), Gaps = 65/706 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L   ++     YYQ +K ++ + EYD +      +         +   N P   +G
Sbjct: 6   RMKELIHTLNEAGKAYYQQNKEVMSNLEYDKMYDELLELEKK----TNTVLSNSPTIHVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            E+  +L K  H  P LSL+K    + L  ++            N     L  K+DG  I
Sbjct: 62  YELMTALEKEAHPSPMLSLDKTKEPDQLATWL------------NGQEGILSWKLDGLTI 109

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + YE G+ + A  RG+G  GE V+   R    +PR ++      + +RGE  I  +DF 
Sbjct: 110 VLTYEHGELLKAVTRGNGEVGEVVTNNARVFENVPRHIA--YQGTLVIRGEAIIPYSDFY 167

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM- 257
            +N+E+  V  + Y NPRN  SG +R+LN      R+++F+   +     +     +E  
Sbjct: 168 KMNEEIEDVDSQ-YKNPRNLCSGSVRQLNNEITAKRHVHFYAFSVSDVEGMDFDNSFEKK 226

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L     LGF V   +R   T   I     +            DGLV   D  +  K LG 
Sbjct: 227 LDWAASLGFDVVEHIRV--TEDTIRGEIEKFSKKIEQFDLPSDGLVLVYDNLAYGKSLGR 284

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+ PR  I+ K+A++ A T L +I+    RTG++ PVA  EPV + G  ++ A+LHN  
Sbjct: 285 TAKFPRDSIAFKWADETAETTLTEIEWSPSRTGLINPVAIFEPVELEGTTVSRASLHNIS 344

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            ++ L            + +GD ++V +A  +IP++      E    +     P  CP C
Sbjct: 345 VMEELQ-----------LGIGDEIVVYKANMIIPQL-----AENKTKSGNIEIPHTCPAC 388

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
                 +       LV    CT    CSA++++   HFVSRDA N++GL +  L      
Sbjct: 389 GGETKIEDENGIRTLV----CTNEF-CSAKKIKSFSHFVSRDAMNVDGLSEATLQKMID- 442

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +    D+FTL+  ++        + GFG+ S  NL ++IN  +  +L  FI+SL
Sbjct: 443 ---VGLLNEIYDLFTLKDHKEEILE----LEGFGEKSYQNLINAINDSKQPALANFIYSL 495

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG   A+ + K++           +  A    D    I +  +G +IA+A+V ++ 
Sbjct: 496 GIPNVGLSNAKLICKHFK---------EDFNAIREADAEDFIAIDQIGPMIAEAMVSYFH 546

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAV 676
            P N   +E LL+ V     + E      +E K  V TG+L     R + +E + Q+G  
Sbjct: 547 TPHNQKILEQLLQYVQFE-KKEESKTEQILEGKTFVVTGSLDHFDNRKQLKEEIEQMGGK 605

Query: 677 VSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S+KTD +I  D     SK +KA +L + I++EE FL L+++
Sbjct: 606 VTGSVSKKTDYLINNDKMSQSSKNKKAMELNIPILSEEDFLDLIRR 651


>gi|149911742|ref|ZP_01900348.1| NAD-dependent DNA ligase [Moritella sp. PE36]
 gi|149805167|gb|EDM65187.1| NAD-dependent DNA ligase [Moritella sp. PE36]
          Length = 482

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 204/508 (40%), Positives = 289/508 (56%), Gaps = 33/508 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++  K++ +L  ++  ++  YY    P + D+EYD L R    +   FP+LA +     
Sbjct: 1   MKEQAKQIQTLTLQLEEYNHQYYVLDNPTVPDAEYDRLLRELKQLETEFPELALA---TS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GGE      ++ H IP LSL+ +++ E+L  F  R+      K    I F+ EPK
Sbjct: 58  PTQKVGGEALTGFSQIQHEIPMLSLDNVFSAEELLAFEKRLQDRLLTKA--EIKFSCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  ++I YE G FV AA RGDG  GED+S  ++ I +IP  L  N  PE +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVFVRAATRGDGQIGEDISENVKTIKSIPLRLRGNDFPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-- 249
           + K  F  LN      G K + NPRNAA+G LR+L+P     R L F  + LG       
Sbjct: 176 MPKAGFDLLNVNAKKKGEKTFVNPRNAAAGSLRQLDPKIAASRPLAFNAYSLGVVEGEVE 235

Query: 250 ---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               +    E LQK++  G PV   V  A  + G + +Y ++   R +L YDIDG+VYKV
Sbjct: 236 GKGLSNSHAENLQKLKLWGIPVCADVTVAMGYQGCLDFYEQIGERRDSLSYDIDGVVYKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQK LG  AR+PRW  SHKF  ++  T LLD++ Q+GRTG +TPVARLEPV +GG 
Sbjct: 296 DDLALQKTLGFVARAPRWATSHKFPAQEEITTLLDVEFQVGRTGAITPVARLEPVFVGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I  L            I++ D+V+++RAG+VIP+V  +++  R  DAQ
Sbjct: 356 TVSNATLHNSDEIARL-----------GIKIKDQVIIRRAGDVIPQVARVMLERRPDDAQ 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP+ CP+C S V R          A  RCT GL C AQ+ E +KHF SR A N++GL
Sbjct: 405 DIVFPATCPVCDSEVERIEGE------ATVRCTAGLYCGAQRKEAIKHFASRKALNVDGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ 514
           G + ++        A  I+ PAD+FT+ 
Sbjct: 459 GDKLVEQLVD----ADLIKTPADLFTVT 482


>gi|237739847|ref|ZP_04570328.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31]
 gi|229423455|gb|EEO38502.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31]
          Length = 594

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 205/634 (32%), Positives = 330/634 (52%), Gaps = 46/634 (7%)

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL   +NI ++  FI RI +   K  +  + + LE K+DG  I++ Y +GK V A  R
Sbjct: 1   MLSLANSYNIGEVVDFIERIKKRISK--EQELKYCLEVKLDGLSISLTYIQGKLVRAVTR 58

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GEDV+  I  I ++ + L   +   IE+RGE+ +    F  LN E +  G + +A
Sbjct: 59  GDGFIGEDVTENILQIASVVKTLPQAL--DIEIRGEIVLPLASFEKLNKERLEKGEELFA 116

Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAASG LR+L+P  +  R L+ + + L +  ++  K   E ++ +  +G        
Sbjct: 117 NPRNAASGTLRQLDPKIVKERALDAYFYFLVEADKLGLKSHSESMKFLESMGIKTTGIFE 176

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
                  I    +  +  R  LPY+ DGLV KVDE +L  ++G  +++PRW I++KF   
Sbjct: 177 LLENSKDIEQRIDYWEKERENLPYETDGLVIKVDEINLWDEIGYTSKTPRWAIAYKFPAH 236

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN   I+            +
Sbjct: 237 QVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNISEIQR-----------K 285

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+C  ++ R+      + +
Sbjct: 286 DIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKTIEEPINCPVCNHKLERE------EGL 339

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
              +C     C A+    +++FVSRDA NI GLG + ++ F         I+   DI+ L
Sbjct: 340 VDIKCVNE-ECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFID----LGYIKTVVDIYDL 394

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           +  +      +ENI   G  S+ NL +SI + +N   ++ I++LGI  +G   ++ LAK 
Sbjct: 395 KNHR----EDLENIDKMGKRSIENLLNSIEESKNREYDKVIYALGIPFIGKVASKVLAK- 449

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV----EALL 629
                       NI    +  +  L  +  +G+I A  I+ F++  +    V    E  L
Sbjct: 450 ---------ASKNIDKLMSMTFEELTSIEGIGEIAANEIIAFFKKEKTQKLVAALKEKGL 500

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           K          +N++     K  +FTGTL+   R + +E + +LG    + +S+  D +I
Sbjct: 501 KFEITESETKVENLNPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKNLSSVSKNLDYLI 560

Query: 690 VGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           VG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 561 VGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 594


>gi|163816857|ref|ZP_02208220.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759]
 gi|158448114|gb|EDP25109.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759]
          Length = 678

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 178/709 (25%), Positives = 321/709 (45%), Gaps = 65/709 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
             +  L ++++     YY     I+ + EYDAL     A+      +      N P  K+
Sbjct: 28  ARIKELVKQLNDAAKKYYMEDTEIMSNLEYDALYDELSALEKETGMVMS----NSPTVKV 83

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E+   L K  H  P LSL+K  ++  L  ++                  +  K+DG  
Sbjct: 84  GYEVVSELPKEAHEHPMLSLDKTKDVGALASWL------------GGQKGVISWKMDGLT 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G+ + A  RG+G  GE ++   +    +P  +       + +RGE  I  +DF
Sbjct: 132 VVLTYENGEMIKAVTRGNGEIGEVITNNAKVFANVPHHI--PYKGKLTIRGEAVIKYSDF 189

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE- 256
            A+N+++       Y NPRN  SG +R+L+      R ++FF   L    ++     ++ 
Sbjct: 190 NAINEKITDA-ESKYKNPRNLCSGSVRQLDNKITKERNVHFFAFNLVDGEDVDFHNSFKY 248

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +   GF V            I     E     +   +  DGLV  +D+ +  + LG
Sbjct: 249 QLDWLEQQGFTVVEHY--LTDSAAIPDKVREFSEKITENDFPSDGLVLMLDDLAYGRSLG 306

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PR  ++ K+A+++A T L  ++    RTG++ PVA  +PV + G  ++ A++HN 
Sbjct: 307 TTAKFPRNAMAFKWADEEAITHLRYVEWSPSRTGLINPVAVFDPVELEGTTVSRASIHNV 366

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             +K L            +  GD + V +A  +IP++   +       +     P+ CP 
Sbjct: 367 SILKSLA-----------LGEGDEIAVYKANMIIPQIARNLT-----MSGNVVIPAACPA 410

Query: 437 CQ--SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           C   + +VR+        V    CT    C A++L+   H+VSR+A NI+GL +  ++ F
Sbjct: 411 CGGETEIVREEGGAV-SGVETLYCTNQF-CPAKKLKSFSHYVSRNALNIDGLSEATIEKF 468

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     +  P D++ L   ++        + GFG+ S   L  +++  R  ++ R +
Sbjct: 469 IDEKI----LEEPPDLYKLAAHREHIVE----LEGFGEKSYNKLVAAVDASRQTNMWRLV 520

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGI +VG   A+ +AK++          N++ A    D  + + +  +G +IA+ IV 
Sbjct: 521 NGLGIANVGEATAKLMAKHFA---------NDMDAMKKADVSAYVEIDGIGQVIAEDIVR 571

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQL 673
           +++N +N   ++ L+ E++        +   ++  K  V TG+L     R++ +E +   
Sbjct: 572 YFENEKNCAIIDRLMAELT--FVDEASDTEQDLAGKVFVITGSLTHFENRNQLKELIESR 629

Query: 674 GAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  V+  +S KT  +I  D  +  SK +KA+ L V I++EE FL L+ Q
Sbjct: 630 GGQVTGSVSAKTSYLINNDVNSTSSKNKKAKSLDVPIISEEDFLELIGQ 678


>gi|330723500|gb|AEC45870.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis MCLD]
          Length = 673

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 218/709 (30%), Positives = 364/709 (51%), Gaps = 53/709 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN- 72
            +QA+K++  L Q++   +  Y+    PI+ D  YD    +   +   +  L   E+ N 
Sbjct: 12  EKQAKKQIEELRQKLHLWNHHYFDLDIPIVDDLVYDQELNKLKKLEKKYFYLFTLEENNA 71

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G +++    K+ HS P LSL K +++E+L KF  +  +      D +  F +EP
Sbjct: 72  SPTQIVGAKVDERFQKIKHSQPMLSLNKAYSLEELEKFAQKTIKI-----DENASFYVEP 126

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEIIEVRGE 190
           KIDG  I++ Y++GKF  A  RGDG +GEDVS  I  I    +P+  S+N  + IE+RGE
Sbjct: 127 KIDGISISLHYKQGKFTQAVTRGDGTTGEDVSHNIENIDAKYVPK--SINYFDDIEIRGE 184

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
           V++    F  +N E   + +  + NPRNAA+G LRRL+  ++    L  FV+ +      
Sbjct: 185 VFLDLESFKNMNLEQARLEKPLFLNPRNAAAGQLRRLDSKSNKLANLKVFVYQVVNPELH 244

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E +Q ++ LGF  NN  +     H       E++   + L Y+IDG+V KV+EF
Sbjct: 245 NLATVEESIQFLQTLGFNTNNLGQHKANIHQSYQLIEEIQEKENKLNYEIDGVVIKVNEF 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            L  +LG  ++ P   I+ KF++K   T+L  I   +GRTG +T  A LEPV + G+ I+
Sbjct: 305 KLYDELGTTSKFPHSAIAFKFSDKVVQTKLKHIFATVGRTGKITYNAVLEPVLLQGSTIS 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN +YIK L            I     V +K+AGE+IP+V+  +      +   F 
Sbjct: 365 AATLHNYNYIKDLA-----------INTNSMVYIKKAGEIIPQVIQSVEK---FEKTNFE 410

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
             + CP C S ++        +      C     C   QL ++ HF S++  +I+ LG++
Sbjct: 411 KITNCPECNSDLI------DSETGIDQFCINP-NCLGIQLRKIIHFCSKEGLDIKDLGEK 463

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           +++ F+        IR   DIF L     T   +I  +  F   S+  L ++I K ++ +
Sbjct: 464 KIELFWDQN----LIRSIPDIFRL----ATKIEEISKLKSFQQKSILKLINAIEKAKHTT 515

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L++ IF+LGI+H+G + A+ LA          Q+++N+      ++ + +    +G+   
Sbjct: 516 LDKLIFALGIKHIGQKTAKMLA----------QKVDNLEQLKTFNFDTFLEDKDIGEKTV 565

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +++  +++N  N+  +  L++     I       S+ +EN   V TGTL +  R + +  
Sbjct: 566 ESLKNYFKNEANLQIINELIQVNFEIIKEETY--SNILENLSFVITGTLSR-SRSQIESI 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + Q    VS+ +S+ T  +I+G+N GSK +KA+ LGVKI++EE+F  LL
Sbjct: 623 ILQNKGKVSSSVSKNTSYLILGENGGSKEDKARNLGVKILSEEEFFKLL 671


>gi|254442845|ref|ZP_05056321.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
 gi|198257153|gb|EDY81461.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
          Length = 718

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 226/709 (31%), Positives = 350/709 (49%), Gaps = 44/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E+ R  L  L  EI+ HDD YY+ + P I D++YDALKR    +   +PDL   +D   
Sbjct: 48  EERGRGRLVELRAEIARHDDLYYRKAAPEISDADYDALKRELHRLEELYPDL---QDGLL 104

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
            +++IG + +    +  H  P LSLEK +  E L  F  R+     +     +   +EPK
Sbjct: 105 IVDEIGDDRSGVRGEFRHFAPMLSLEKAYTEEALLSFYDRV---LSQLTFEELDCLVEPK 161

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  I++ YE+G+FV A  RG+G  GEDVS  +  I  +PR L + + PE +E+RGEVY
Sbjct: 162 VDGMAISVLYERGEFVRAVSRGNGRVGEDVSENVLRIEGLPRRLETESPPERVELRGEVY 221

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTSEI 249
           +S   F  LN+  +A G +P+A+PR+ A+G L+  +P  ++     + FF +G  +  E 
Sbjct: 222 VSFEGFRRLNEARVAAGEEPFAHPRSLAAGSLKLDDPEVVSERSLSIVFFGYGAFEPVEE 281

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q       +  G PV   +R+      +++   EM+  R   P+ +DG V K+D  
Sbjct: 282 APETQSGFYGLAQSWGIPVLEELRKTRGTEALLAAVREMEERRVLYPFPMDGAVVKIDRA 341

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            +Q++LG    +PRW +++KFAEK+  TRLL I IQ+GRTG+LTPVA LE + +GG+ I 
Sbjct: 342 DVQRELGLGTSAPRWAMAYKFAEKRVETRLLGIRIQVGRTGLLTPVAELEEIRLGGSSIR 401

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN   I+ +           D+R+GD V ++RAGEVIP VV + + +R   +  + 
Sbjct: 402 RASLHNGGVIERM-----------DLRIGDVVYLERAGEVIPNVVGVNLAKRKSSSTKYV 450

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP C      D            R      C AQ   +++HF S  A  IEG+G  
Sbjct: 451 FPDLCPSCGYAAELDEGRVE-------RYCRSSTCPAQAQRKIEHFASSRAVGIEGIGPA 503

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           ++         A  +   AD++ L+                 +     L   I+  R  S
Sbjct: 504 KIADLMD----AGLVETVADLYLLEVPDLVQAGVGS------EAVARKLVSEISGSRAAS 553

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R +F LGI  VG   ++ LA  Y     FA+      +               G +  
Sbjct: 554 LWRVLFGLGIPEVGVSRSKKLAAAYGDLAAFARASALDFSPGGRAAEV-----GFGPVAR 608

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +A++ +     N   +  L  E+         +  SE+     VFTG L+ + R +A   
Sbjct: 609 EAVLAYLSLDENRELIGRL-VELGLGARSEVMDTRSEVAGTIFVFTGALEGLSRKEAMAL 667

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V   GA   + +S   D ++VG  PG+KL+KA++LGV+++  E+F  LL
Sbjct: 668 VEAAGAETRSAVSSACDFLVVGKEPGAKLQKARELGVEVIGLEKFRRLL 716


>gi|117926963|ref|YP_867580.1| Fis family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|166215818|sp|A0LDY1|DNLJ_MAGSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117610719|gb|ABK46174.1| transcriptional regulator, Fis family [Magnetococcus sp. MC-1]
          Length = 768

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 221/617 (35%), Positives = 323/617 (52%), Gaps = 47/617 (7%)

Query: 113 RIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172
           R  R W  +    + +  EPK+DG   ++ Y +G  V AA RGDG  GEDV+A  R I  
Sbjct: 172 RRLRLWAAEQPQRVEYVAEPKLDGLAFSLTYAEGVLVRAATRGDGQEGEDVTAHARTIQD 231

Query: 173 IPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT- 230
           +P  L     P ++EVRGEVY+    F  LN E    G K +ANPRNAA+G LR+L+P  
Sbjct: 232 VPLRLQGAGYPALLEVRGEVYMPLATFEKLNAEARERGEKTFANPRNAAAGSLRQLDPKI 291

Query: 231 DITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
             +R L  F +G G       A    E+L  ++  G  V+    +     G ++Y   + 
Sbjct: 292 TASRGLRMFCYGTGYVEGGTLADRYAEILAALKGWGLRVSPEAERVEGAQGCLAYTERLG 351

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R TLPY+IDG V KVD   L+++LG  AR+PRW ++ KF   + ST +  ID+Q+GRT
Sbjct: 352 EKRETLPYEIDGAVLKVDSQRLRERLGFVARAPRWAMAFKFPATEESTTVQAIDLQVGRT 411

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G++TPVARLEPV +GG  +TNATLHN   +             +D+RVGDRV+V+RAG+V
Sbjct: 412 GVITPVARLEPVAVGGVTVTNATLHNFLELAR-----------KDVRVGDRVIVRRAGDV 460

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IP+VV +I  E H     +  P  CP+C +   R+          A RC+GGL C AQ  
Sbjct: 461 IPEVVRVIPRESHGALAVYKEPVACPVCGAPTEREGGET------ALRCSGGLTCRAQVK 514

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
           E +KHF SR A NIEGLG + +    +    A  +   +D++ L  ++Q     +  +  
Sbjct: 515 EGVKHFASRKAMNIEGLGDKLVALLMQ----AGLVERISDLYRLHEQRQV----LVGLER 566

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
            G  SV NL ++I + +  S  RF+F LGIR VG  +A SLA ++ S        + ++A
Sbjct: 567 LGGKSVANLLEAIEQSKAQSAARFLFGLGIRDVGVTLAGSLAAHFTSL-------DALMA 619

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--------- 640
              +D    + +  VG+++A+ +V F+    +   + AL      + G            
Sbjct: 620 ATVEDL---VGIEDVGEVVARRVVHFFAQAHHGAELAALRALGVAAAGEPWRVEPDGHGV 676

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
                 +    +V TGTL  + R  A   +  LGA V A +S KT  ++ G++ GSKL K
Sbjct: 677 AAAEQPLSGLSVVLTGTLAGLTREAAAVRLEGLGAKVVASVSGKTGCLVCGESAGSKLAK 736

Query: 701 AQQLGVKIMNEEQFLFL 717
           AQ+ GV +++E     L
Sbjct: 737 AQKAGVPVLDEAALEGL 753



 Score =  140 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  +A    + L + ++++   Y+     ++ D+EYD L R   ++  A P L      
Sbjct: 1   MSASRA----AELRKRLNHYAHSYHTLDTSLVSDAEYDRLFRELQSLEAADPTLI---SA 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           + P +++GG +     KV H +  LSL+  ++ +DL +F  R+     +
Sbjct: 54  DSPTHRVGGAILEGFEKVRHRVAMLSLDNAFSAQDLVEFHRRVQEGLAE 102


>gi|304372912|ref|YP_003856121.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis HUB-1]
 gi|304309103|gb|ADM21583.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis HUB-1]
          Length = 673

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 218/709 (30%), Positives = 365/709 (51%), Gaps = 53/709 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN- 72
            +QA+K++  L Q++   +  Y+    PI+ D  YD    +   +   +  L   E+ N 
Sbjct: 12  EKQAKKQIEELRQKLHLWNHHYFDLDIPIVDDLVYDQELNKLKKLEKKYFYLFTLEENNA 71

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G +++    K+ HS P LSL K +++E+L+KF  +  +      D +  F +EP
Sbjct: 72  SPTQIVGAKVDERFQKIKHSQPMLSLNKAYSLEELKKFAQKAIKI-----DENASFYVEP 126

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEIIEVRGE 190
           KIDG  I++ Y++GKF  A  RGDG +GEDVS  I  I    +P+  S+N  + IE+RGE
Sbjct: 127 KIDGISISLHYKQGKFTQAVTRGDGTTGEDVSHNIENIDAKYVPK--SINYFDDIEIRGE 184

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
           V++    F  +N E   + +  + NPRNAA+G LRRL+  ++    L  FV+ +      
Sbjct: 185 VFLDLESFKNMNLEQARLEKPLFLNPRNAAAGQLRRLDSKSNKLANLKVFVYQVVNPELH 244

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E +Q ++ LGF  NN  +     H       E++   + L Y+IDG+V KV+EF
Sbjct: 245 NLATVEESIQFLQTLGFNTNNLGQHKANIHQSYQLIQEIQEKENKLNYEIDGVVIKVNEF 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            L  +LG  ++ P   I+ KF++K   T+L  I   +GRTG +T  A LEPV + G+ I+
Sbjct: 305 KLYDELGTTSKFPHSAIAFKFSDKVVQTKLKHIFATVGRTGKITYNAVLEPVLLQGSTIS 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN +YIK L            I     V +K+AGE+IP+V+  +      +   F 
Sbjct: 365 AATLHNYNYIKDLA-----------INTNSMVYIKKAGEIIPQVIQSVEK---FEKTNFE 410

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
             + CP C S ++        +      C     C   QL ++ HF S++  +I+ LG++
Sbjct: 411 KITNCPECNSDLI------DSETGIDQFCINP-NCLGIQLRKIIHFCSKEGLDIKDLGEK 463

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           +++ F+        IR   DIF L     T   +I  +  F   S+  L ++I K ++ +
Sbjct: 464 KIELFWDQN----LIRSIPDIFRL----ATKIEEISKLKSFQQKSILKLINAIEKAKHTT 515

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L++ IF+LGI+H+G + A+ LA          Q+++N+      ++ + +    +G+   
Sbjct: 516 LDKLIFALGIKHIGQKTAKMLA----------QKVDNLEQLKTFNFDTFLEDKDIGEKTV 565

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +++  +++N  N+  +  L++     I       S+ +EN   V TGTL +  R + +  
Sbjct: 566 ESLKNYFKNEANLQIINELIQVNFEIIKEETY--SNILENLSFVITGTLSR-SRSQIELI 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + Q    VS+ +S+ T  +I+G+N GSK +KA+ LGVKI++EE+F  LL
Sbjct: 623 ILQNKGKVSSSVSKNTSYLILGENGGSKEDKARNLGVKILSEEEFFKLL 671


>gi|295090337|emb|CBK76444.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10]
          Length = 676

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 191/708 (26%), Positives = 322/708 (45%), Gaps = 58/708 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  L Q ++ H   YY  + P I D+EYD +  + + +      +      N P   +G
Sbjct: 17  KIKELVQTLNRHRHAYYNLNAPEISDAEYDRMYDQLERLEEETGIIYS----NSPTQTVG 72

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                 L KV H  P LSL+K   +EDL +F                      K+DG  +
Sbjct: 73  YPPVSELKKVPHPHPLLSLDKTKQVEDLYRFCNGHAALL------------MLKLDGLTV 120

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + YE G+ + AA RGDG  GE+++  I     IP  L+++  E + V GE +I K DF 
Sbjct: 121 KLTYENGRLMEAATRGDGEIGEEITHNIPTFENIP--LTVSYKERLVVTGEAFIRKKDFE 178

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL--GKTSEIFAKGQYE 256
            LN  +     KPY N RN A+G +R L+P +   R + F    +  G      +  + E
Sbjct: 179 RLNLTIRDKDGKPYKNARNLAAGSVRSLDPENCKGRCVTFLPFNVLEGLDEGEHSNSREE 238

Query: 257 MLQKMRCLGFPVNNGVRQ---ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            L ++  LGF     +       +   +     ++K     L   IDG+V   D+ +   
Sbjct: 239 RLYQLSKLGFGSCPYIPLNPDQVSPEYLELRIQDLKEKAEMLDLPIDGMVLIFDDLAYSA 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
             G      +  ++ KF ++   T L  I+    R G L PVA  + V+I G  ++ ATL
Sbjct: 299 SRGRTGHHYKDGLAFKFEDETYETTLQSIEWTPSRFGELAPVAVFDTVDIDGCSVSRATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN  +I+ L+              G R+LV +   +IP + D +   R+ DA     P+ 
Sbjct: 359 HNLTFIRELELVS-----------GCRILVSKRNMIIPHIEDNLDRGRYQDA----APAI 403

Query: 434 CPICQSRVV-RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           CP C +    R    + G+++    C+   +C  QQL++  HFV R A NIEGL +  L+
Sbjct: 404 CPCCGAPTELRRKTAENGRIIETVHCSNP-SCEIQQLKKFVHFVCRKAMNIEGLSEATLE 462

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         +R   DI+ L + +     +I  + GFG+ S   L+++I   RN +  R
Sbjct: 463 KFLN----LGYLRTFHDIYHLDQHR----DEIIRLDGFGEKSFDRLWNAIQASRNTTFVR 514

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++ S+ I  VG   +R L   +      +  +++  A   DD+    ++   G  + + I
Sbjct: 515 YLISMDIPMVGRTKSRVLDTIF------SGNLDDFRAAAIDDY-DFSQLEDFGATLNRNI 567

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYV 670
            +++ +  N+   + L KE +    + E  +   +    K +V TG L+   R +  + +
Sbjct: 568 HDWFADEENLALWDTLQKEFTFEERKEETIMAKDNVFAGKTIVATGKLENFTRSEINDKI 627

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            ++GA   + ++ KTD +I G+  GSKL KA+ LG+ I++E +FL  +
Sbjct: 628 LEIGAKPGSSVTGKTDYLICGEKAGSKLAKAKSLGITILSEAEFLAKI 675


>gi|207723346|ref|YP_002253745.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial
           sequence n terminus) protein [Ralstonia solanacearum
           MolK2]
 gi|206588545|emb|CAQ35508.1| probable dna ligase (polydeoxyribonucleotide synthase [nad+])
           (partial sequence n terminus) protein [Ralstonia
           solanacearum MolK2]
          Length = 568

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 199/567 (35%), Positives = 297/567 (52%), Gaps = 59/567 (10%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           + +   YY   +P + D+EYD L R  +A+    P+L     P+ P  ++GG +      
Sbjct: 25  NRYAHEYYVLDQPSVPDAEYDRLYRALEALEAEHPEL---RTPDSPTLRVGGAVLPEFAP 81

Query: 89  VTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRYEK 145
           V H +P LS+    +   +    F   + R     + D  + +  E K DG  I +RYE+
Sbjct: 82  VRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDPPVEYAAELKFDGLAINLRYEQ 141

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISKNDFLALN 202
           G  V AA RGDG +GEDV+  IR I  IP  L      +P+++EVRGEVY+ ++DF  LN
Sbjct: 142 GFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLN 201

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI--FAKGQYEMLQ 259
                 G K + NPRN A+G +R+L+P     R L+FF +GLG+ +      +    ML 
Sbjct: 202 ARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPETHSGMLD 261

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGFPV+          G+V ++  + + R +LP+DIDG+VYKV+  +LQ++LG R 
Sbjct: 262 ALVALGFPVSKERAAVMGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNALALQRELGFRT 321

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R PRW ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNATLHNED +
Sbjct: 322 REPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEV 381

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD--------------- 424
           +            +D+RVGD V+V+RAG+VIP+VV +++  R  +               
Sbjct: 382 RR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPVQQPK 430

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           + PF  P  CP+C S VVR+         A  RC+GGL CSAQ+ E ++HF  R   +IE
Sbjct: 431 SPPFELPKSCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIRHFAGRRMMDIE 484

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL-----------GFGDV 533
           GLG++ +D   + E     +   AD++ L         +  +                  
Sbjct: 485 GLGERYIDNLVELE----YVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATK 540

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIR 560
              NL   I   +   L RF+F+LGIR
Sbjct: 541 WAENLLAGIQASKTPPLARFLFALGIR 567


>gi|295093347|emb|CBK82438.1| DNA ligase, NAD-dependent [Coprococcus sp. ART55/1]
          Length = 678

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 176/709 (24%), Positives = 321/709 (45%), Gaps = 65/709 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
             +  L ++++     YY     I+ + EYDAL    +A+      +      N P  K+
Sbjct: 28  ARIKELVKQLNDAAKKYYMEDTEIMSNLEYDALYDELNALEKETGMVMS----NSPTVKV 83

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E+   L K  H  P LSL+K  ++  L  ++                  +  K+DG  
Sbjct: 84  GYEVVSELPKEAHEHPMLSLDKTKDVGALASWL------------GGQKGVISWKMDGLT 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G+ + A  RG+G  GE ++   +    +P  +       + +RGE  I  +DF
Sbjct: 132 VVLTYENGEMIKAVTRGNGEIGEVITNNAKVFANVPHHI--PYKGKLTIRGEAVIKYSDF 189

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE- 256
            A+N+++       Y NPRN  SG +R+L+      R ++FF   L    ++     ++ 
Sbjct: 190 NAINEKITDA-ESKYKNPRNLCSGSVRQLDNKITKERNVHFFAFNLVDGEDVDFHNSFKY 248

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +   GF V            +     E     +   +  DGLV  +D+ +  + LG
Sbjct: 249 QLDWLEQQGFTVVEHY--LTDSAALPDKVREFSEKITENDFPSDGLVLMLDDLAYGRSLG 306

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PR  ++ K+A+++A T L  ++    RTG++ PVA  +PV + G  ++ A++HN 
Sbjct: 307 TTAKFPRNAMAFKWADEEAITHLRYVEWSPSRTGLINPVAVFDPVELEGTTVSRASIHNV 366

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             +K L            +  GD + V +A  +IP++   +       +     P+ CP 
Sbjct: 367 SILKSLA-----------LGEGDEIAVYKANMIIPQIARNLT-----MSGNVVIPAACPA 410

Query: 437 CQ--SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           C   + +VR+        V    CT    C A++L+   H+VSR+A NI+GL +  ++ F
Sbjct: 411 CGGETEIVREEGG-AASGVETLYCTNQF-CPAKKLKSFSHYVSRNALNIDGLSEATIEKF 468

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     +    D++ L   ++        + GFG+ S   L  +++  R  ++ R +
Sbjct: 469 IDEKI----LEELPDLYKLAAHREHIVE----LEGFGEKSYNKLVAAVDASRQTNMWRLV 520

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGI +VG   A+ +AK++          N++ A    D  + + +  +G +IA+ IV 
Sbjct: 521 NGLGIANVGEATAKLMAKHFA---------NDMDAMKKADVSAYVEIDGIGQVIAEDIVR 571

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQL 673
           +++N +N   ++ L+ E++        +   ++  K  V TG+L     R++ +E +   
Sbjct: 572 YFENEKNCAIIDRLMAELT--FVDEVSDTEQDLAGKVFVITGSLTHFDNRNQLKELIESR 629

Query: 674 GAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  V+  +S KT  +I  D  +  SK +KA+ L V I++EE FL L+ Q
Sbjct: 630 GGQVTGSVSAKTSYLINNDVNSTSSKNKKAKSLDVPIISEEDFLELIGQ 678


>gi|71892277|ref|YP_278011.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|123747814|sp|Q492G5|DNLJ_BLOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71796383|gb|AAZ41134.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 595

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 209/620 (33%), Positives = 338/620 (54%), Gaps = 51/620 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L +++ + +  YY  ++  + D +YDA+  + + +   +P L      + P  
Sbjct: 4   VKQKIQKLRKKLRHWEYLYYTKNESAVSDEKYDAMLEKLNQLEQIYPHLIAE---SSPTQ 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +IGG    +  K+ H +P LSL  I     L  F  RI    +   ++ + +  E KIDG
Sbjct: 61  RIGGVSQYNFKKIHHKVPMLSLNSIVASFQLLSFDKRIK--IKLHANHVMSYCCELKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN------IPEIIEVRGE 190
             +++ Y++GK +YAA RGDG  GEDV+  I  I  +P  L ++      +P ++E+RGE
Sbjct: 119 VAVSLLYKEGKLIYAATRGDGKIGEDVTENISTIRAVPMCLKIDSNKYGKLPYLLEIRGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--TS 247
           V+ISK  FL LN   I  G KP++N RNAASG LR+L+P+   TR L+F+ +G+      
Sbjct: 179 VFISKLCFLELNKITIQQGNKPFSNARNAASGSLRQLDPSVTATRPLSFYCYGISNYCGE 238

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      +E LQ     G P+NN +R  +  + ++ YY+ +K+IRS L ++IDG+V KV+
Sbjct: 239 KELPDSHWERLQLCENWGLPINNYIRLISGVNKVLEYYSYIKTIRSNLEFNIDGIVIKVN 298

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             + Q +LG  +R+P W +++KF  + +S ++ ++  Q+GRTGI+TP+A LEP+ I    
Sbjct: 299 SCAYQSKLGCGSRAPHWALAYKFPSEVSSAKVDNVIFQVGRTGIITPIAYLEPIVISDVT 358

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I    +HN + +K L            + +GD V ++R+G+VIPK+V++I++ER    + 
Sbjct: 359 IRKVNMHNINEVKRL-----------GLMIGDTVRIQRSGDVIPKIVEVILSERTDHVKT 407

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P FCP+C SR+      KT +  +  RCT GL+C AQ+   L+HFVS+ A NI G+G
Sbjct: 408 IELPRFCPVCGSRI------KTWRNQSILRCTAGLSCLAQRKATLEHFVSKKAMNIYGMG 461

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +D           I   +D+F L + +           GFG  ++  L  SI   + 
Sbjct: 462 NKIIDQLVNQ----GLIFTSSDVFRLNKNKLLCLE------GFGLENIERLLRSIEDSKK 511

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           I+L RFI++LGI  VG  +A +LA  Y + +N A            D  SL  +  VG I
Sbjct: 512 ITLARFIYALGIYGVGETVASNLAIVYKTIENLAAA----------DLQSLSNLKYVGPI 561

Query: 608 IAQAIVEFYQNPRNICAVEA 627
           IA  I  F++NP N+  V+ 
Sbjct: 562 IANNIYHFFRNPDNLKNVQD 581


>gi|291320206|ref|YP_003515467.1| DNA ligase [Mycoplasma agalactiae]
 gi|290752538|emb|CBH40510.1| DNA ligase [Mycoplasma agalactiae]
          Length = 654

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 214/710 (30%), Positives = 357/710 (50%), Gaps = 57/710 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+A++ + SL + I+  +  YYQ +KP + D EYD      + +    PDL  +   
Sbjct: 1   MQKEKAKELIKSLVETINQWNYEYYQLNKPSVSDLEYDKALLELEKLEKEHPDLILN--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  +IG   +    K  H  P LSL K +N +D+  FI  I +        +I F +E
Sbjct: 58  NSPTFRIGSFASEKFTKFVHQKPMLSLAKAYNYDDINSFINNISKIVPT---ENINFNIE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y++GK V AA RGDG  GEDV+  I  I +IP+++  N    +EVRGEV
Sbjct: 115 PKIDGLSIALHYKQGKLVKAATRGDGSEGEDVTENIYQIKSIPKLI--NYLNDLEVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           +I+KNDF  +N+       +  A      SG LR+L+   +  R L+ F++ + +  +  
Sbjct: 173 FITKNDFKKINESNNFANARNAA------SGTLRQLDANIVAERNLSAFLYEIVEPEKHG 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q+E L+ M+ L FP N   +       +    N+   I++ L YD DGLV K+D+  
Sbjct: 227 IYYQHEALEFMKNLNFPTNPFSKVVE-IEELEESINDFAEIKNKLDYDADGLVIKLDDLQ 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +  +LG+ ++ P+  I+ K+  + AS++++DI   +GRTG +T +A + PV +    +  
Sbjct: 286 MWDKLGKTSKFPKHSIAFKYDVEIASSKIIDILTSVGRTGKITYIANILPVLLNQTTVKA 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN ++IK ++           I + D V + +AGE+IPKV+ +   + + D   +  
Sbjct: 346 ATLHNHNFIKDMN-----------ININDEVNIIKAGEIIPKVISLKEEKNYVD--YYKK 392

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C S++V        + +    CT    C  + +  + HF SR+  NI GLG   
Sbjct: 393 ATNCPSCGSQLV------EFEGIVDQFCTND-ECPDKNINNIYHFASRNCLNIVGLGLST 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F+        I+   DIF L R +     ++  +  + D+ V N+ +SI   +N   
Sbjct: 446 VKDFYPK-----FIKNIKDIFDLHRHR----AELIKLPRYRDLKVDNILNSIESAKNKKF 496

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + IF+LGI+H+G   A+ +A  Y ++     + N          L L     +G  I +
Sbjct: 497 SKVIFALGIKHIGQRAAKLIADNYANFAELLDDHN---------LLKLQNTKNIGPKIIE 547

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +++EF  +P N   +     +   +     K +S+ +     V TG L + + H  +  +
Sbjct: 548 SLIEFISSPANQDLL--AFLDAIFNYEGKAKVISTILSGYTFVITGVLSEPRSHFVK-LI 604

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +    VS+ +S KT  ++ G + GSKLEKA + G K++NEEQF  L++Q
Sbjct: 605 EEHSGNVSSAISSKTSYLLAGSDAGSKLEKAYKTGTKVINEEQFYDLIKQ 654


>gi|257069044|ref|YP_003155299.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810]
 gi|256559862|gb|ACU85709.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810]
          Length = 871

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 222/852 (26%), Positives = 351/852 (41%), Gaps = 166/852 (19%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A++ +++L   I      YY++  P + D+EYD L++   A+  A P LA     + P
Sbjct: 19  ETAQQRIAALTARIEQARVDYYEHDAPTMADAEYDELEKELRALEEANPQLAAE---DSP 75

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG     L  + H+    SL+ ++++E+LR++               + +  E KI
Sbjct: 76  TRTVGGAAAAGLPTIDHAERMQSLDNVFSLEELREWCAHAAAELG----GEVRYLTELKI 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  I +RYE G+ V AA RGDG +GEDV+     I  IP+ LS    P ++EVRGEV++
Sbjct: 132 DGLAINLRYEHGELVTAATRGDGRTGEDVTVNALQIDGIPQRLSGSGHPALVEVRGEVFM 191

Query: 194 SKNDFLALNDEMIAVGR----------------------------------KPYANPRNA 219
              DF  LND  + +                                      +ANPRN 
Sbjct: 192 PTADFERLNDLQVELRERAVAESRTRWESRQGSGRRPFDEQRESLAAARRFPTFANPRNT 251

Query: 220 ASGILRR-LNPTDITRY---------LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
           A+G LR+ L+  +             L   VHGLG   +     Q EM + +   G P +
Sbjct: 252 AAGGLRQQLDKKEGLEREAGEARLAALRLTVHGLGAWPDPPVGSQSEMYELLASWGLPTS 311

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
             +   ++   + +Y       R  L ++IDG+V KVD F+ Q+ LG  +R+PRW I+ K
Sbjct: 312 RYMDVVDSIDEVAAYVEHHGEHRHDLEHEIDGIVVKVDSFAQQRALGSTSRAPRWAIAVK 371

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           F  ++ +T+LLDI +Q+GRTG +TP   +EPV + G+ +  ATLHN+  ++         
Sbjct: 372 FPPEEVTTKLLDIQVQVGRTGRVTPFGVMEPVTVAGSTVEKATLHNQFDVER-------- 423

Query: 390 RGGRDIRVGDRVLVKRAGEVI------------------------PKVVDIIVNERHPDA 425
              + + +GD +++++AG+VI                        P     I  ER  D 
Sbjct: 424 ---KGVLIGDTIVLRKAGDVIPEILAPVESLRDGSERPFVMPAQCPACGTEIRPEREGD- 479

Query: 426 QPFSFPSF--CPIC--------QSRVVRDLNPKTGKLVAAHRCT---GGLACSAQQLERL 472
           + +  P+   CP           SR   D+     +   A        G A +A      
Sbjct: 480 KDWRCPNQRDCPAQVTGRVEHAGSRGAFDIESLGEESAIALTDPDKRRGEALAALAEGHA 539

Query: 473 KHFVSRDAFNI--EGL-----GKQQL-------------DFFFKSEDPAFSIRIPADIFT 512
            H   RDA +   EG      G+                D           I   AD+F 
Sbjct: 540 IHLPLRDASDTAEEGFVVLKNGEVTAGTDGVPLLRITSADDPLLPAPQQGVITTGADLFD 599

Query: 513 LQ-----------------------------------RRQQTSTTKIENILGFGDVSVTN 537
           L                                    R  +      +        S   
Sbjct: 600 LTPEGLEGVFVWQPERRNGEPTGDWRIQPAFWSRPQFRHYKRDEEWRQQKAPSVLKSTEV 659

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L   + K ++  L R + +L IRHVG   ARSLA  Y S            A        
Sbjct: 660 LISELEKAKSQPLWRVLVALSIRHVGPTAARSLATAYGSMD----------AIREASVEQ 709

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           L     VG+IIA+A+VE++    +   V+   +         E+  +  +E   +V TG 
Sbjct: 710 LSDTDGVGEIIAEAVVEWFAVDWHRELVDGWARSGVRMADEVEEGFTKTLEGLTVVVTGG 769

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+   R  A+E +   G   S  +S+KTD ++VG+N GSK  KA++LG++I++E  F+ L
Sbjct: 770 LEGFTRDGAKEAIITRGGKASGSVSKKTDFVVVGENAGSKETKARELGLRILDEAGFVAL 829

Query: 718 LQQYNTTLRIHD 729
           L+     + + +
Sbjct: 830 LEGGAEAVALEE 841


>gi|183219642|ref|YP_001837638.1| DNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189909780|ref|YP_001961335.1| DNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|190359263|sp|B0SA75|DNLJ_LEPBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781356|sp|B0SKC1|DNLJ_LEPBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167774456|gb|ABZ92757.1| DNA ligase (NAD+) (contains BRCT domain type II) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778064|gb|ABZ96362.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 671

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 202/717 (28%), Positives = 349/717 (48%), Gaps = 58/717 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  +K + +L +EI  H+D YY+ + P+I D E+D L +    +    PDLA   D + 
Sbjct: 7   AEDPKKRIITLRKEIGRHNDLYYKENAPVITDKEFDILVKELQKLESENPDLA---DVSS 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +++    K  H +P LSLE  +N  +L +++ +              ++LE K
Sbjct: 64  PTAQVGSDLSPQFSKFKHKVPVLSLENTYNETELSEWLEKT--------GIEENYSLEWK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I + YEKGK      RG G  G+ V+  ++ I TIP  LS  +   + VRGE+++
Sbjct: 116 IDGASILLYYEKGKLTNCVTRGSGGIGDVVTENVKTISTIPHTLSEEM--NLTVRGEIFM 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFA 251
           +  DF   N+E    G K +ANPRN A+G +++ +P D+  R L  +V+ +  +S     
Sbjct: 174 TFADFEEFNEEY---GGK-FANPRNLAAGSIKQKDPLDVAKRPLRIYVYDVYFSSSRKGI 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               ++L  ++   FP+            ++      +  +  +P+ +DGLV K+D  +L
Sbjct: 230 NTHKDILSLLKKEKFPLAPDTTILTG-KKLLREIESFRKKKDKMPFPVDGLVIKLDSLNL 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ LGE + SPRW  + KF      + + +ID  IGRTG +TP A++ P+++ G  +T A
Sbjct: 289 RESLGETSHSPRWARAFKFDALLKESTIEEIDFAIGRTGKVTPRAKVTPISLAGTTVTYA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  L A            +G +VL+ + GE+IP V  +    +      F  P
Sbjct: 349 TLHNQDYINQLGAG-----------IGAKVLISKRGEIIPAVEKVTFPPKT----IFVLP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C +++ +              CT    C  ++L +L  F S+   NIEGLG++Q+
Sbjct: 394 NQCPSCNTKLTK------VDDSVDFFCTN-RHCPERKLNQLIFFCSKKQMNIEGLGERQI 446

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             FF+       ++   D++TL++ + T       + GFG+ SV  ++D+I K +     
Sbjct: 447 QIFFEK----GWVKDIPDLYTLEKYKPTLLE----LDGFGEKSVKIIFDAIEKSKEKDFR 498

Query: 552 RFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             + S+G+  VG ++   L +  Y S+          ++ +      L  +  +G    +
Sbjct: 499 FTLPSIGLNEVGPKVTEILIENGYDSWDKLL-----TLSKSKTANEDLKAIHGIGPRTIE 553

Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQE 668
           A++   ++   +  V  L K  +       EK+       +    TG+ +    R  A +
Sbjct: 554 ALLTHLKDKETLKLVATLKKLGLKFQADETEKSDLQPFVGQSWCVTGSFENFQPRDLAMD 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            +T+ G      +S KT  ++ G   GSKL+KA +LGVK++ E +FL LL+Q    +
Sbjct: 614 LITKHGGKKVTSVSSKTTHLLYGPGAGSKLDKATELGVKLVTESEFLDLLKQEGIAI 670


>gi|27904570|ref|NP_777696.1| DNA ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|32129495|sp|Q89B02|DNLJ_BUCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|27903967|gb|AAO26801.1| DNA ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 672

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 217/712 (30%), Positives = 359/712 (50%), Gaps = 45/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  +  L+ EI YH   Y+  + P I D +YD L      +        R +  + 
Sbjct: 1   MKDIKNYILKLQDEIRYHAYLYHTLNSPKISDEKYDFLVIELQRLEKKCKYSVRFK--DS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E      K +H  P LSL  ++   D  KF  +I           IFF  E K
Sbjct: 59  PTQSVGSENLPEFKKFSHITPMLSLNNVFIKNDFLKFYKKI---VNNITVEKIFFCSELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
            DG  I + Y  G    A  RG+G+ GEDV++ +  I ++P+ L  ++IPE +EVRGE++
Sbjct: 116 FDGVAINLIYINGLLFRAVTRGNGYEGEDVTSNVNMISSVPKKLIGIDIPETLEVRGEIF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS-EIF 250
           + K+DF  LN  +    +K ++N RNAASG LR  N      R L F+ +G G  S E F
Sbjct: 176 MLKSDFKKLNVRLTKFKKKLFSNSRNAASGSLRHKNAKVTELRSLTFYCYGCGYCSYENF 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +  L+K++  GFP+++     +++  I+ +YN +++ R  L ++IDG+V KVD   
Sbjct: 236 TDSHFLRLKKLKSWGFPISDYNFLHSSYDEILRFYNFIQNERYFLNFNIDGIVIKVDSIC 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQK L   +++PRW +++KF++K   T +++I  Q+GRTG++TPVA++ P+ I G LI  
Sbjct: 296 LQKSLSTTSKAPRWAVAYKFSDKIKITTIMNILYQVGRTGVITPVAQVTPIYISGVLIKK 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +LHN + I+ L+           + +GD V +KR+G+VIP ++++    +    +  S 
Sbjct: 356 VSLHNFNEIRRLN-----------LNIGDSVFIKRSGDVIPHIIEVASKCKLQRNEDISI 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P FCP C S++               RC  GL C +Q  + L +F S+   NI GLG + 
Sbjct: 405 PKFCPECGSKL-----KVDSFSNIKIRCMAGLKCLSQFKKLLHYFCSKKGLNILGLGPKI 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D           +   +DIF L     T       +   G +   N+  SIN  +N+S 
Sbjct: 460 IDKLVD----LGYVSDLSDIFDLNVSLLT------KVENIGIIKSQNIIRSINNSKNVSF 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+ SLGI  VG+ +ARS++ Y+ +   F           N      + +  +G  IA 
Sbjct: 510 SKFLCSLGIFEVGSIVARSISNYFFTLDKFM----------NSSKEEFLLINGIGVNIAD 559

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +  F  +  N   +  L K+++ S   +   + ++ +  KK+VF+G+     R K  E 
Sbjct: 560 NLYNFINDEFNKNIIFKLSKKLNISSDINAIIDNNNTLFRKKIVFSGSFSNFSRSKIIEL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             +LG +V + +S+  D II+G  PG KL KA++  +  + E++FL ++  Y
Sbjct: 620 SKKLGIIVVSSVSKSVDYIIIGKKPGRKLIKAKKFSIPGIYEKEFLNIINVY 671


>gi|228982993|ref|ZP_04143252.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407]
 gi|228777176|gb|EEM25484.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407]
          Length = 669

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 209/718 (29%), Positives = 345/718 (48%), Gaps = 71/718 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             +++  L +E+  HD  Y     PII DSEYD +     ++    P+ A   D N P  
Sbjct: 2   IEQKIKQLREEVMKHDLLY-DEGTPIITDSEYDQMYYELVSLEEKHPEFA---DENSPTK 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +I   +  SL K+ HS P LS +K    ED+ KF  +          +        K DG
Sbjct: 58  RIYSVVVDSLKKIKHSTPMLSQDKGHTEEDIVKFANK----------SDDEIIAGDKEDG 107

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I ++Y  G +  A+ RGDG+ GEDV+  +R I  +P+ +S      +EVR E  I  +
Sbjct: 108 LTIVLKYNNGIYYEASTRGDGYIGEDVTHTVRTITNLPKKISFK--GYLEVRAESVIPFS 165

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +F  +N          Y +PRN  SG +R LN      R L+     L K   I  +   
Sbjct: 166 EFERINV------DGKYKSPRNLVSGSVRTLNANIAKERGLSIIAFDLVKAEGITFEKDT 219

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM----KSIRSTLPYDIDGLVYKVDEFSL 311
           E L+ ++  GF V       NT  GI           K +R T+P+ IDGLV K +  ++
Sbjct: 220 EQLEFLKEQGFNVVPYKVFKNTPEGIKELIQYCLTYNKEVRPTIPHMIDGLVLKFNNLAV 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ LG  ++ PRW  + KF    A+T+LL+I   +G++G +TP    EPV I G  I  A
Sbjct: 280 RESLGYTSKFPRWGFAFKFDSLDATTKLLNIVETVGKSGQITPNGIFEPVEIDGVTIQKA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +L N D IK            RDIR+GD ++V RA +VIP++V  +   R    +    P
Sbjct: 340 SLANYDNIK-----------ERDIRIGDTIVVARANDVIPQIVSAVTELRDGTEKEILPP 388

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C+  VV++ +         H       CSAQQ   LKHFVSR+A NI+GLG + +
Sbjct: 389 TCCPVCKGEVVKEED-------NVHYFCINSTCSAQQERILKHFVSRNAMNIDGLGAKTV 441

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F++       +   +DI+TL+     +  K+  + GFG+  +  +   I + +++ L 
Sbjct: 442 ETFYEK----GILSSISDIYTLKD----NLDKLSVLRGFGEKKIQKMLSGIEESKHVPLS 493

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +F+++L I +VG+   + +AK + + ++  +   + +    +    L+++  +G+ +A +
Sbjct: 494 KFLYALAIPNVGSSTGKDIAKKFKTMRHLIELSKDPVVLKTE----LMKIDGIGETVASS 549

Query: 612 IVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +V +++   NI  +E L     +      E   S EIE K  V TG+L K  R+  ++ +
Sbjct: 550 MVSYFEESHNIELIEFLYSIGFTMMEEVEEIIASEEIEGKIFVITGSLSKP-RNDIKKEI 608

Query: 671 TQLGAVVSAILSRKTDIIIVG------------DNPGSKLEKAQQLGVKIMNEEQFLF 716
              G  VS  +S KT+ +++G            +   SK + A +    I++EE+   
Sbjct: 609 EARGGKVSGSVSAKTNFLVLGGYNHVTGELPEKETNSSKYKNAVKFECPIISEEELFA 666


>gi|302337851|ref|YP_003803057.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293]
 gi|301635036|gb|ADK80463.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293]
          Length = 703

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 213/739 (28%), Positives = 354/739 (47%), Gaps = 76/739 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+A +E+  L   +  ++  YY   KP + D+EYD L  R   +   +P+L R    + P
Sbjct: 10  EKATEEVRRLADLLFRYNRAYYIEGKPEVSDTEYDRLFLRLQELEEQWPELKRE---DSP 66

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G +++    +V H +P LSL+K +++E+L  ++ R       ++ + + F +E KI
Sbjct: 67  TLRVGSDLSSDFPEVEHRVPVLSLDKAYSVEELLGWMGRT----SGREASGLSFVVEEKI 122

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y  G    A  RG+G+ G DV+  +R I ++P  L+  +   I VRGE+Y+ 
Sbjct: 123 DGVSIVLYYRGGILERAVTRGNGYVGNDVTDNVRTIGSVPLRLTEAV--DIAVRGEIYLP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKG 253
           K  F +LN +M       Y NPRN A+G LRR+   ++    L  FV+    +     K 
Sbjct: 181 KASFESLNRKM----GNLYVNPRNLAAGTLRRVKSREVAEVPLTIFVYEGFFSDG--PKS 234

Query: 254 QYEMLQKMRCLGFPVNNGV------------------RQANTFHGIVSYYNEMKSIRSTL 295
             E+L+ ++ LGF  N  V                   Q+ T+  +  Y       R +L
Sbjct: 235 HLEILEYLQSLGFRTNRRVGIFTNRTDLADFSRRHPDWQSGTWDELEGYVRTSTEERGSL 294

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            Y+IDGLV K++E  ++ +LG     PRW I++KF     ++ +  IDIQ+GRTG +TPV
Sbjct: 295 DYEIDGLVVKINELDVRDRLGYTGHHPRWAIAYKFESPTGTSIIKSIDIQVGRTGRITPV 354

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           AR+EPV +GG+ I+N TLHN+DY+  L+           I VGD+V + R G+VIP V +
Sbjct: 355 ARVEPVFVGGSTISNVTLHNQDYVDMLE-----------IAVGDQVSISRRGDVIPAVEE 403

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           ++      +   ++ P  CP C S + +           AH     L+C  Q   RL  F
Sbjct: 404 VVAKNESGN-PVWNMPLLCPSCGSSLQKK---------GAHTFCLNLSCPDQVRGRLFFF 453

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           ++    +I+GLG + +D   +       +  PAD++           ++    GFG+  +
Sbjct: 454 IAAGQMDIDGLGPETVDLMIRE----GFVSEPADLYRF------DYERLLPYPGFGEKKI 503

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL-AKYYLSYQNFAQEINNIIAHNNDD 594
             +   + K         + S+GI  +G ++   L +  + S     + I  ++   N D
Sbjct: 504 EAIRRGLEKSLTRPFHTVLASVGIPEMGKKVIELLISAGFRSM----KAIYALVDQKNRD 559

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKK 651
             +LI V  +G+     I E          +  L +         + +++SE      + 
Sbjct: 560 --ALIAVKGIGEKTVDTIFEELGREAVRKRINELAEVGLAMEEEEKLSIASEQLIFAGQS 617

Query: 652 LVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
              TG+ Q    R KA E V++ G  V + +S KT  ++ G+  GSKL KA+ LGV++++
Sbjct: 618 WCVTGSFQHFNPRGKAMELVSRFGGSVVSSVSGKTSHLLAGEGGGSKLTKARSLGVEVLS 677

Query: 711 EEQFLFLLQQYNTTLRIHD 729
           EE+FL LL      +   D
Sbjct: 678 EEEFLDLLASAGIEIPSAD 696


>gi|291522304|emb|CBK80597.1| DNA ligase, NAD-dependent [Coprococcus catus GD/7]
          Length = 653

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 185/707 (26%), Positives = 326/707 (46%), Gaps = 67/707 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L   ++     YY     ++ + EYDAL      +             N P   +G
Sbjct: 7   RIKELTGILNRASKAYYMQDTELMSNYEYDALYDELVQLEKE----TGITLSNSPTIHVG 62

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            E+   L K  H  P LSL+K  +++ L  ++                  L  K+DG  I
Sbjct: 63  YEVLSELPKEEHEYPMLSLDKTKDVQVLADWL------------GDQTGVLSWKMDGLTI 110

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y+ G+ V A  RG+G+ GE ++   R    +P  ++      + +RGE  I  +DF 
Sbjct: 111 VLTYDNGELVKAVTRGNGYVGEVITNNARVFKNVPHRITFK--GKLTLRGEAVIKYSDFN 168

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA-KGQYEM 257
           ALN   I      Y NPRN  SG +R+LN      R + FF   L     +     + + 
Sbjct: 169 ALN-SQIEDSEAKYKNPRNLCSGSVRQLNNAVTAERNVYFFAFTLVVAEGMDFYNSRMQQ 227

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            + +   GF V   V        + +Y  +     +   +  DGLV  +++ +  + LG 
Sbjct: 228 FEWLSSQGFDVVEHVLV--DRENLPTYVAQFADRIADNDFPSDGLVLILEDIAYGESLGT 285

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+ PR  I+ K+A++   TRLLD++    RTG++ P+A  EPV + G  ++ A+LHN  
Sbjct: 286 TAKFPRNAIAFKWADEIRETRLLDVEWSASRTGLINPIAVFEPVELEGTTVSRASLHNIS 345

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            ++ L            +  GD + V +A  +IP++ + +       +     P  CP+C
Sbjct: 346 ILRALQ-----------LGKGDVIQVYKANMIIPQIAENLTR-----SDALEIPKKCPVC 389

Query: 438 QSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                VR +N      V++  C     C A+ ++R   FVSRDAFNIEG+ +  L+ F +
Sbjct: 390 GKPTEVRCVND-----VSSLYCVNE-ECPAKHVKRFLLFVSRDAFNIEGMSEATLEKFIQ 443

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           S      +R PAD+F L             + GFG+ S   L  SI K R ++L + I+S
Sbjct: 444 S----GFLREPADMFHLDSYHDVIVE----MDGFGEKSYQRLMASIQKARKVTLAKLIYS 495

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI ++G   AR L ++Y +      ++  ++A + ++  +   +  +G +IA +  +++
Sbjct: 496 LGILNIGLSNARLLCQHYRN------DLQAMLAASTEELTA---IDGIGPVIAGSFTDYF 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGA 675
            + ++   ++ LL EV      +        + K  V TG+L+  + R+  +  + + GA
Sbjct: 547 ADEQHRIELKDLLGEVEIE-QENFSEEGRVFDGKVFVITGSLEHFKNRNNLKALLEEKGA 605

Query: 676 VVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V+  +S KT  +I  D  +  SK ++A++LGV ++ EE+ + ++++
Sbjct: 606 KVAGSVSSKTSYLINNDSTSASSKNKRARELGVPVITEEELIDMMKK 652


>gi|332704021|ref|ZP_08424109.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554170|gb|EGJ51214.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay]
          Length = 771

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 215/612 (35%), Positives = 336/612 (54%), Gaps = 48/612 (7%)

Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
           WQ        F ++PK+DG  +   YE G+ V AA RGDG  GEDV+  +R +  +P VL
Sbjct: 189 WQSLPALLGTFWIDPKLDGLALEAIYENGRLVRAATRGDGEIGEDVTQNVRTVKNLPLVL 248

Query: 178 SLN--IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITR 234
                +P ++EVRGEV + K DF ALN+     G K +ANPRNAA+G +R+L+P    TR
Sbjct: 249 HDGGVMPRLLEVRGEVVMRKADFHALNERQAERGEKIFANPRNAAAGSVRQLDPRITATR 308

Query: 235 YLNFFVHGLGKTSEIFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            L FF +G+G+     A   +GQ E++  +  LGF +    RQ      + + +  +++ 
Sbjct: 309 PLRFFAYGIGRVDWNGAPGWQGQDEIIAGLAQLGFAIPPEARQCRHPDEVAASFERLQAG 368

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R  LP++IDGLV K++   LQ+ LG  A++PRW ++ KF   QA T L DI IQ+GRTG+
Sbjct: 369 REALPFEIDGLVAKLNCLELQRFLGFTAKAPRWALALKFPAYQAETLLRDIRIQVGRTGV 428

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           LTPVA L+PV++GG  +++A+LHNE YI+            +D+R+GDRVL++RAG+VIP
Sbjct: 429 LTPVAELDPVSVGGVTVSSASLHNESYIR-----------EKDLRLGDRVLIQRAGDVIP 477

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +  +R    Q ++FP  CP+C + V+        +     +C   ++C A   + 
Sbjct: 478 EVVRPLAEKRTGGEQEYTFPPECPVCHTEVI-----LASEERRIWKCVN-ISCPAVIRQS 531

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           + HFVS+   +IEGLG++ ++           +R PAD+FTL++    +  ++      G
Sbjct: 532 IIHFVSKAGLDIEGLGRKWVEILIDKGM----VRSPADLFTLKKTDLLTLERM------G 581

Query: 532 DVSVTNLYDSINKRR-NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           D S +N  +SI + +    L R I +LGI HVG E AR LA  +              A 
Sbjct: 582 DKSASNFVESIRQAKEEAKLPRLIAALGIPHVGEETARLLASRFRDLD----------AL 631

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSE 646
                  L  +P + D I+++IV+F+ N  N   +           +      E      
Sbjct: 632 GAATRQELEELPGISDKISESIVDFFLNEANRSLLGRFKEIGLWPSNAPAVAPEGKTKLP 691

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K+++FTG L  + R +A+  + Q G   +  +S+  D ++VG+NPGSKL+KA +LG+
Sbjct: 692 LAGKRVLFTGGLPSMSRSEAETLLEQAGGTAAKSISKNVDYVVVGENPGSKLDKADKLGL 751

Query: 707 KIMNEEQFLFLL 718
            ++  E+FL L+
Sbjct: 752 AVIGFEEFLRLV 763



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  R+ +  L +E+ +H+  YY    P+I D+EYD + R    +    P+L    D + 
Sbjct: 5   PEDIRQRVERLRKELHFHNYRYYVLDAPVISDAEYDRMMRELQDLEEHNPEL---RDTSS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +  H++   SL+   ++++ R+F+ R+ R ++      +    E +
Sbjct: 62  PTQRVGAAPAEGFAQYRHALRMYSLDNAMSVDEWREFVARVGRHFEDVFLAKLEAETEVR 121

Query: 134 IDG 136
             G
Sbjct: 122 AGG 124


>gi|15594897|ref|NP_212686.1| NAD-dependent DNA ligase LigA [Borrelia burgdorferi B31]
 gi|7673988|sp|O51502|DNLJ_BORBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2688477|gb|AAC66923.1| DNA ligase (lig) [Borrelia burgdorferi B31]
          Length = 660

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 205/709 (28%), Positives = 347/709 (48%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 228 DLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKFSTGFFKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++         A   C     C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE--------GAHFFCPNN-NCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T    +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFDFYKLL------EFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I+E + +   +   +               +  ++ +  KK   TGT     R    + +
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIIIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 612 KNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|216263494|ref|ZP_03435489.1| DNA ligase, NAD-dependent [Borrelia afzelii ACA-1]
 gi|215980338|gb|EEC21159.1| DNA ligase, NAD-dependent [Borrelia afzelii ACA-1]
          Length = 660

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 206/709 (29%), Positives = 353/709 (49%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   +  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   KIQQEIADLKKLIRKWNKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS+P LSL+K++N++ L+ +I +I         NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSVPVLSLDKVYNLDLLKLWIDKI------DFSNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  IR I  +P  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHVPLFLGEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLDFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVRQAN---TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++K++ LGF VN  +R  +   +   +++Y  ++   R++  Y+IDG+V KV +F+L
Sbjct: 228 NLAIEKLKKLGFKVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG     P+W +++KF      +++  I +Q+GR+G +TPVA ++ V + GA ITNA
Sbjct: 288 REKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFITNA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  ++           + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIASIN-----------LNVGDIVKVSRRGDVIPAVEMVI---NKFSTGFFKIP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++         A   CT    C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DKCPSCKTVVVKE--------GAHFFCTNN-NCPSVAVERIKYFCSKNCMDIEGFSDKTI 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T    +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FISSEIDLYTFNFYKLL------KFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +    +  +L+L+++  +G+ IA  
Sbjct: 495 KLLLSIGIKELGENTIRLL---FLNNLNSFSKLFRLCQDRDFAFLTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I++ + N   I   +           R   +  ++ +  KK   TG+     R    + +
Sbjct: 552 IIDAFNNSIMINKFKVFENLGFKMEERILIDDENKLLVGKKFCITGSFNGYSRPIVIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+    +++  D ++VG+  G+KL+KA  L VKIM+ E     L 
Sbjct: 612 ENKGAIFKTCVTKGLDFLVVGEKAGTKLKKALNLNVKIMSFEDIKSYLD 660


>gi|195941686|ref|ZP_03087068.1| DNA ligase (lig) [Borrelia burgdorferi 80a]
 gi|225549484|ref|ZP_03770450.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 118a]
 gi|225369761|gb|EEG99208.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 118a]
          Length = 660

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 205/709 (28%), Positives = 347/709 (48%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 228 DLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKFSTGFFKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++         A   C     C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE--------GAHFFCPNN-NCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T    +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFDFYKLL------EFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I+E + +   +   +               +  ++ +  KK   TGT     R    + +
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 612 KNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|295135415|ref|YP_003586091.1| DNA ligase [Zunongwangia profunda SM-A87]
 gi|294983430|gb|ADF53895.1| DNA ligase [Zunongwangia profunda SM-A87]
          Length = 812

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 169/521 (32%), Positives = 268/521 (51%), Gaps = 30/521 (5%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
               ++ +L +E+ +H+  YY    P I D ++D   +    +    P+     DPN P 
Sbjct: 2   DIENKIYTLREELQHHNYQYYVLDNPEISDYDFDMKLKELQELEEKHPEF---NDPNSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +   V H     SL   ++ E+L+ + TRI +      D  I +T E K D
Sbjct: 59  QRVGGAVTKNFTTVVHDYRMYSLSNSYSKEELQDWETRIRKLV----DGDIKYTCELKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ Y+KG+ V A  RGDG  G+DV+  ++ I ++P  L  + PE   +RGE+ +  
Sbjct: 115 GASMSLMYDKGQLVQAVTRGDGFQGDDVTNNVKTIRSVPLKLRGDYPEKFHIRGEIVLPF 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E +  G +PYANPRN ASG L+  +  ++  R L+  ++ +     +    Q
Sbjct: 175 EGFAKLNAERVENGEEPYANPRNTASGSLKLQDSAEVAKRPLDCLLYNIA-GENLPISSQ 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L+K R  GF V       N    ++SY N     R  LPY+ DG+V KV++F  Q++
Sbjct: 234 FESLEKARDWGFKVPAESELKNNIEEVLSYINYWDIHRHDLPYETDGVVVKVNDFGQQEE 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW +++KF  +Q +T+L  I  Q+GRTG +TPVA LEPV + G ++  A+LH
Sbjct: 294 LGYTAKSPRWAMAYKFKAEQETTKLHKITYQVGRTGAITPVANLEPVQLAGTIVKRASLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L           DIR GD+V V++ GE+IPK+V +   +R PD++P ++  +C
Sbjct: 354 NADQIAKL-----------DIREGDKVFVEKGGEIIPKIVGVDFKQRDPDSEPTTYAIYC 402

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + + R          A H C   + C  Q + R++HFVSR A +I+GLGK  ++  
Sbjct: 403 PECGTELQRKEGE------AQHFCPNYVGCPPQIIGRMEHFVSRKAMDIDGLGKGTIEIL 456

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +        I   +D + L         +  +    G    
Sbjct: 457 Y----YNGIINNYSDFYYLTYDDIIGQERWLDNEEAGIKKS 493



 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 108/191 (56%), Gaps = 12/191 (6%)

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
               +  N+ +S+ + +  + ++ +F+LGIR VG   AR +A+++ +       I+ ++A
Sbjct: 633 IQKKTTENILNSVEESKKRTFDKVLFALGIRDVGEVSARKIAEHFGN-------IDKLMA 685

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
            N ++    I++  VG+ +A +I+EF+ +  NI  V+ L ++        ++  S+++E 
Sbjct: 686 ANTEEL---IQLRDVGERVAASIIEFFTDEENIDIVKRLREKDLQFEMEEKETSSNKLEG 742

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKI 708
              V +GT   I R + ++++ + G    + LS+ T+ +IVG+  G SK  KA++ G+ +
Sbjct: 743 LSFVVSGTFS-ISRSELKKHIEENGGKNLSSLSKSTNYLIVGEKMGPSKKVKAEKEGIAM 801

Query: 709 MNEEQFLFLLQ 719
           ++EE+F  +++
Sbjct: 802 ISEEEFFKMIE 812


>gi|226320519|ref|ZP_03796084.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 29805]
 gi|226234083|gb|EEH32799.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 29805]
          Length = 660

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 205/709 (28%), Positives = 347/709 (48%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   RVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 228 DLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKFSTGFFKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++         A   C     C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE--------GAHFFCPNN-NCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T    +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFDFYKLL------EFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I+E + +   +   +               +  ++ +  KK   TGT     R    + +
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 612 KNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|216264759|ref|ZP_03436751.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 156a]
 gi|223888694|ref|ZP_03623285.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 64b]
 gi|225548725|ref|ZP_03769772.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 94a]
 gi|215981232|gb|EEC22039.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 156a]
 gi|223885510|gb|EEF56609.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 64b]
 gi|225370755|gb|EEH00191.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 94a]
          Length = 660

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 204/709 (28%), Positives = 346/709 (48%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 228 DLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKFSTGFFKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++         A   C     C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE--------GAHFFCPNN-NCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++     +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYAFDFYKLL------EFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I+E + +   +   +               +  ++ +  KK   TGT     R    + +
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 612 KNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|160881055|ref|YP_001560023.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg]
 gi|190359247|sp|A9KPL0|DNLJ_CLOPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160429721|gb|ABX43284.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg]
          Length = 653

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 196/712 (27%), Positives = 332/712 (46%), Gaps = 65/712 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ ++ L + +      Y Q  + I+ + EYD L      +      +        
Sbjct: 1   MQGKKQRITQLTELLDEAARVYEQEDREIMSNFEYDKLYDELKKLEEETGIVLAG----S 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G E+   L K  H    LSL+K   +  L  ++             +    L  K
Sbjct: 57  PTRKVGYEILSELPKERHESAMLSLDKTKEVPALIDWL------------GNKEGILSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y  G+ V A  RG+G  GE V+   +    +P  L++     + +RGE  I
Sbjct: 105 MDGLTIVLTYRNGELVKAVTRGNGEVGEVVTNNAKVFKNLP--LTIPYEGELIIRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-A 251
             +DF  +N ++     K Y NPRN  SG +R+LN      R +NFF   L +  E+   
Sbjct: 163 RYSDFEMINAQIPDADAK-YKNPRNLCSGSVRQLNNAITAKRNVNFFAFALIRMDEMNRF 221

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K   E    ++ LGF V     +  T   +       +S   T  +  DGLV   ++ + 
Sbjct: 222 KTMMEQFNWLKELGFDVVEE--KLVTAENMAETMEYFESHIITNDFPSDGLVLFFNDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  ++ PR  I+ K+ ++   T L +I+    RTG++ PVA  EPV + G  ++ A
Sbjct: 280 GESLGRTSKFPRNGIAFKWRDEIKETTLQEIEWSASRTGLINPVAIFEPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN   ++GL+           + +GD+V V +A  +IP++ D +       +     P
Sbjct: 340 SLHNISIMEGLE-----------LGLGDKVTVYKANMIIPQIADNLTR-----SGHLPIP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C    +     K    V +  C     C A++++   HFVSRDA NIEGL +  +
Sbjct: 384 KTCPVCGGDTMI----KQDSDVKSLYCMNP-ECLAKKIKSFTHFVSRDAMNIEGLSEATI 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           I+  ADIF ++  +     +I  + GFG+ S  NL DS+ K R   L 
Sbjct: 439 EKLIAK----GLIKELADIFHVKDFK----EEITTMEGFGEKSFRNLVDSVEKARTPILA 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +FI+SLGI +VG   A+ + K +    N           +N     L ++P +G +IA+A
Sbjct: 491 KFIYSLGIANVGLANAKLICKEFGYDFN---------KVSNATVDELTQIPQIGYVIAEA 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
            V ++Q P N   +E LLKE++          S +++    V TG+++    R++ ++ +
Sbjct: 542 FVSYFQKPENKLIIEDLLKEITFE-KEEAAGGSEKLKGLTFVITGSVEHFTNRNEVKDVI 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            Q G  V+  ++ KT+ +I  DN    SK +KA++LG+ ++ EE+F+ LL +
Sbjct: 601 EQHGGKVTGSVTAKTNYLINNDNTSSSSKNKKARELGIPVITEEEFIQLLNE 652


>gi|225552370|ref|ZP_03773310.1| DNA ligase, NAD-dependent [Borrelia sp. SV1]
 gi|225371368|gb|EEH00798.1| DNA ligase, NAD-dependent [Borrelia sp. SV1]
          Length = 660

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 205/709 (28%), Positives = 348/709 (49%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   + + +P+       + P 
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELENKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRIDSREVANFPLNIFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVRQAN---TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R  +   +   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 228 DLATARLKKLGFKVNPLIRFFDQKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  +            + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIASI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKFSTGFFKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C+  VV++         A   C     C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKMAVVKE--------GAHFFCPNN-KCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T    +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFDFYKLL------EFKGFKDRKINNLINSIEASKQKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +    +  + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRDFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I+E + +   +   +             E +  ++ +  KK   TGT     R    + +
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVEIDGENKFLAGKKFCITGTFNGYSRSIVIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 612 KNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|196234150|ref|ZP_03132983.1| DNA ligase, NAD-dependent [Chthoniobacter flavus Ellin428]
 gi|196221801|gb|EDY16338.1| DNA ligase, NAD-dependent [Chthoniobacter flavus Ellin428]
          Length = 658

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 203/663 (30%), Positives = 320/663 (48%), Gaps = 83/663 (12%)

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
               + + +EPK+DG  +++ YE G F   A RGDG  G++++  ++ + +IP  L    
Sbjct: 3   PGEQLEWLVEPKVDGLAVSLLYENGVFTRGATRGDGERGDEITDNLKTLRSIPLRLHGKG 62

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            PE++EVRGEVY+    F  + +EMIA G +P+AN RN A+G L++L+P  +  R L   
Sbjct: 63  APEVLEVRGEVYLPVAGFQRIREEMIAAGEEPFANARNTAAGTLKQLDPALVAKRPLEIV 122

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++GLG+ S      Q  +L+ M+  G       R  +T   ++   +E+ SIR    ++ 
Sbjct: 123 LYGLGEISVDPPPTQAALLEWMKAFGLRTPKFTRVCHTAEEVMKAIDELDSIRDGFGFET 182

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG V K++    ++++G  +R+P+W  + K+  +QA T L  I IQ+GRTG+LTPVA L 
Sbjct: 183 DGAVIKLNSIEQRERVGYHSRAPKWAKAWKYVSEQAETVLESITIQVGRTGVLTPVAELR 242

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+ I+ ATLHNED IK            +DIR+GD VL+++AGEVIP VV +++ 
Sbjct: 243 PVFLRGSTISRATLHNEDEIKR-----------KDIRIGDTVLIEKAGEVIPAVVKVVLE 291

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   AQPF FP  CP+C S+  RD N       A   C   + C AQ   RL++F  R 
Sbjct: 292 KRPSSAQPFPFPHECPVCHSQAKRDPN------FAVWVCEN-VNCPAQLTRRLEYFAKRG 344

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGDVSVTN 537
           A +I+GLG    D   +       +R P D+F L+  Q  +     +     FG+ + T 
Sbjct: 345 ALDIDGLGGIVADKLVERS----LVRDPLDLFELKLEQLATLNLGTDDEPRVFGEKNATK 400

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------EINNIIA 589
           + ++I + +   L R++ +L I  VG E A  LAK++ S +             ++ +  
Sbjct: 401 VTEAIKRAKTQPLARWLHALAIPEVGEETAHDLAKHHPSLEAVRDSAMLRDVVALDRLHG 460

Query: 590 HNND------------DWLSLIRVPLVGDIIAQAIV------------------------ 613
              +            +           ++IA+A                          
Sbjct: 461 EAEESNPRGKRNKDKTELEKQKLASRHAEVIAEANAAGRRLLEAGFAAPAKKKSATDADV 520

Query: 614 -------------EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
                         ++        ++ L        G            K  V TGTL+K
Sbjct: 521 VTVVGPVVAQAALHWFAGESGHETLKRLHHLHIAPKGATPGAGDQAFAGKTFVLTGTLEK 580

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R+ A E +  LG  VS+ +SRKT  ++ G   GSKLE AQ LGV +++E+QFL +L  
Sbjct: 581 MGRNAAAEKIRALGGNVSSSVSRKTSYVVAGPGAGSKLEDAQSLGVTVLSEDQFLKMLAD 640

Query: 721 YNT 723
              
Sbjct: 641 SGA 643


>gi|312149444|gb|ADQ29515.1| DNA ligase, NAD-dependent [Borrelia burgdorferi N40]
          Length = 660

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 205/709 (28%), Positives = 346/709 (48%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 228 DLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKFSTGFFKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++         A   C     C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE--------GAHFFCPNN-NCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T    +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFDFYKLL------EFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +       +  L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSILLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I+E + +   +   +               +  ++ +  KK   TGT     R    + +
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 612 KNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|294660617|ref|NP_853482.2| DNA ligase [Mycoplasma gallisepticum str. R(low)]
 gi|298286803|sp|Q7NAF8|DNLJ_MYCGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|284812280|gb|AAP57050.2| DNA ligase [Mycoplasma gallisepticum str. R(low)]
 gi|284930979|gb|ADC30918.1| DNA ligase [Mycoplasma gallisepticum str. R(high)]
          Length = 715

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 203/744 (27%), Positives = 346/744 (46%), Gaps = 81/744 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  ++ +  L ++++  +  YY  S P + D  YD   R        +P    S     P
Sbjct: 7   ESIKEIIEDLVKKLTKWEHEYYVLSNPSVSDEVYDNTYRTLLGYERKYPQYVLSY---SP 63

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G  ++    KV H    LSL   +N E+L  F   I +  +++D+    + LEPKI
Sbjct: 64  TQRVGSSISNKFIKVKHDYLMLSLGNCFNFEELLNFNENIAKISKQEDNP---YVLEPKI 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++ Y  G    A  RGDG  GE V A I+ I TIP  ++  I +I+ +RGEVY+S
Sbjct: 121 DGLSISLIYLDGVLSEALTRGDGVFGESVIANIKTIKTIPLKINTTIKKIV-IRGEVYVS 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
             DF A+N        K +AN RN ASG LR ++ +++  R LN F + +    E+  + 
Sbjct: 180 NQDFEAINASRDE--DKKFANSRNYASGSLRNIDVSEVAKRKLNAFFYYIPNAYELGFET 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           QY+++Q+++  GF V   ++  +    + +   E+++ ++ L Y IDG V K + F   +
Sbjct: 238 QYQVIQQLKEWGFNVAKEIKLFSNIKELYTSLKELENNKNKLDYRIDGAVIKYNNFKDYE 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            +G  ++ P+W I++KFA  Q  T+L DI + +GRTG LT VA+L P+ + G++IT ATL
Sbjct: 298 IIGYTSKFPKWAIAYKFAPTQVQTQLKDIILNVGRTGKLTFVAQLAPIELEGSIITYATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN +YI  L           DIR+ D V + +A E+IPKV+ + +++R  +A+   F   
Sbjct: 358 HNLEYINDL-----------DIRINDYVYLIKAAEIIPKVIGVNLDKRPNNAKKLEFDYN 406

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   +V+              C     C  +QL+ L ++ S+   NIEGL +  L  
Sbjct: 407 CPSCHQPLVKKPEE------VDWYCIYD-QCKQKQLQYLIYYCSKPIMNIEGLSESTLAL 459

Query: 494 FFKSE-----------------------------DPAFSIRIPADIFTLQRRQQTSTTKI 524
           FF ++                             +    +    DI+ L+R ++      
Sbjct: 460 FFNTKVNDVIRECNELITNQNVSEDLSLFKLLDNEEQTFVNSVLDIYQLERYKEIIIKPW 519

Query: 525 ENI----------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
                          F + S   L +SIN+ +N  L R + +L I+++G   A+S+A  Y
Sbjct: 520 LKKGFSKSSLKYNFRFQEKSFDKLINSINESKNRELYRLLAALNIKYIGIATAKSIANTY 579

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KE 631
                            N      +R+  +  I A ++  F+ + +N   +E L      
Sbjct: 580 HDIDQLK----------NLTVEDYMRLADISSITANSLFSFFSDEKNWELIEQLKTLSIN 629

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
               I     + SS   +KK V TG+    +    ++   +      + +S+  D ++ G
Sbjct: 630 TKDEINNDLVDSSSIYYDKKFVITGSFSISRNDIIKKLSLKYKIKFVSGVSKNVDFVLAG 689

Query: 692 DNPGS-KLEKAQQLGVKIMNEEQF 714
           ++P + K+ +A+ L + I+ EE +
Sbjct: 690 NSPTAKKINQAKVLNIPIIQEEIW 713


>gi|312147884|gb|ADQ30543.1| DNA ligase, NAD-dependent [Borrelia burgdorferi JD1]
          Length = 660

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 204/709 (28%), Positives = 346/709 (48%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   RVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 228 DLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKFSTGFFKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++         A   C     C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE--------GAHFFCPNN-NCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T    +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFDFYKLL------EFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I+E + +   +   +               +  ++ +  KK   TGT     R    + +
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 612 KNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|224531714|ref|ZP_03672346.1| DNA ligase, NAD-dependent [Borrelia valaisiana VS116]
 gi|224511179|gb|EEF81585.1| DNA ligase, NAD-dependent [Borrelia valaisiana VS116]
          Length = 660

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 204/712 (28%), Positives = 350/712 (49%), Gaps = 63/712 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFIYDKHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS+P LSL+K++++  L+ +I +I        ++S   ++EPKID
Sbjct: 61  LKFGSDLLNDFEEVEHSVPILSLDKVYDLNLLKTWIDKI------DFNDSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  ++ I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKGGILEKALTRGNGKFGNDVTKNVKTIRYIPLFLDEEV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +F  +N  +     KPY+N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFFKINKFL----EKPYSNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVRQAN---TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R  +   +   ++SY  ++   R++  Y+IDG+V KV +FSL
Sbjct: 228 NLATARLKKLGFKVNPLIRFFDQKSSIKEVLSYIADITKKRNSFEYEIDGVVLKVSDFSL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  +  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA ITNA
Sbjct: 288 RERLGYTSHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITNA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  +           D+ VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIMSI-----------DLNVGDVVKVSRRGDVIPAVEMVI---NKFSTGFFKIP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ +V++         A   CT    C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 ENCPACKTVLVKE--------GAHFFCTNN-NCPSVVIERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++     +           GF    V+NL +SI   +     
Sbjct: 445 SFLFEKK----FISSEIDLYIFNFCKLF------EFKGFKGKRVSNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++ ++    +  + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKELGENTIRLL---FLNNLNSFSKLFSLCQDKDFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I+E + +      +       +      E       S  + +KK   TGT     R    
Sbjct: 552 IIEAFNDSIM---INKFKFFENLEFKMEECIVIDGESRLLADKKFCITGTFDGYSRPIII 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+  A +++  D ++ G+  GSKL+KA  L +KIM+ E     L 
Sbjct: 609 DKLKNKGAIFKACVTKDLDFLVAGEKAGSKLKKALNLNIKIMSFEDIKSYLD 660


>gi|168187649|ref|ZP_02622284.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
 gi|169294495|gb|EDS76628.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
          Length = 649

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 190/711 (26%), Positives = 341/711 (47%), Gaps = 67/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   + +  L +E++   D YY   K  ++D E+D        +     ++  S   N 
Sbjct: 1   MEDKTQRVKELIKELNEASDKYYNSDKTTMIDKEWDDKFDELKQLEQE-TEVILS---NS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G E+   L KV H+IP  SL K  +I+DL+KFI             +    +  K
Sbjct: 57  PTQKVGYEVKSKLDKVVHNIPLKSLGKTKSIDDLQKFI------------GNNEILIMDK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG    + Y+ G+ +  + RG+G  GED++  ++    IP  L ++    +++ GE  I
Sbjct: 105 GDGLTCELIYDNGQLLQGSTRGNGEIGEDITHNVKTFKNIP--LQIDFKGYLKLSGESVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
              DF  +N ++    +  Y+N RN  +G +R+L+      R + F+   L +  E   K
Sbjct: 163 LDEDFELINAKLDEEDK--YSNSRNLVAGSVRQLDSKICDKRNVRFYAFSLLECGEAEFK 220

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            + E L+ +  LGF     ++  +    +    ++M+       + IDGLV+  +     
Sbjct: 221 TKEEQLEFLSRLGFETIEYIK-YDNSEELEQVISKMQKSAYEKGFPIDGLVFAYNNIEYA 279

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG+    P   I++KF +++  T+ +  + Q+ RTG++ PVAR EPV I G+++  AT
Sbjct: 280 NSLGDTLHHPLHSIAYKFYDEEYETKYIATEWQVSRTGMINPVARFEPVEIEGSVVERAT 339

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DY + L            +  GD + V +A +VIPKV+          +     P+
Sbjct: 340 LHNLDYFEDL-----------KLGQGDTIKVIKANQVIPKVM-----SNDTMSNTEIIPT 383

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +       K  K      C     CSA+ + R+ H+ SR+A NI+GL ++ ++
Sbjct: 384 ECPVCGGKTE----EKLLKTARVLICINP-ECSAKHISRIVHYCSRNAMNIDGLSEKTIE 438

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         ++   DI+ L++ +     +I NI GFG  S  N+ ++I K ++  LE 
Sbjct: 439 KFVN----LGYLKDIDDIYKLEQYK----EEIINIDGFGTKSYNNMIEAIEKSKHCKLEN 490

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LG+  VG   A+ L K + S +             N +   +  +  +GD++   I
Sbjct: 491 FIFALGVPSVGLGTAKLLVKKFKSIEKVM----------NCNLEEIYSIDGIGDVVGNEI 540

Query: 613 VEFY-QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
             ++  N  +I  V  LLK +       +++ S+++E K  V TG +   + R++ +  +
Sbjct: 541 YNYFIINKDSINLVNKLLKFI--DFEEVKESSSNKLEGKTFVITGDVHVFKNRNEVKAKI 598

Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++G  V+  +S+KTD +I    ++  SK +KA+ L + I+ EE+F+ +++
Sbjct: 599 EEMGGKVTGSVSKKTDYLINNDVESTSSKNQKAKDLNIPIITEEEFVEMIK 649


>gi|284931737|gb|ADC31675.1| DNA ligase [Mycoplasma gallisepticum str. F]
          Length = 715

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 205/744 (27%), Positives = 353/744 (47%), Gaps = 81/744 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  ++ +  L ++++  +  YY  S P + D  YD   R        +P    S     P
Sbjct: 7   ESIKEIIEDLVKKLTKWEHEYYVLSNPSVSDEVYDNTYRTLLGYERKYPQYVLSY---SP 63

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G  ++    KV H    LSL   +N E+L  F   I +  +++D+    + LEPKI
Sbjct: 64  TQRVGSSISNKFIKVKHDYLMLSLGNCFNFEELLNFNENIAKISKQEDNP---YVLEPKI 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++ Y  G    A  RGDG  GE V A I+ I TIP  ++  I +I+ +RGEVY+S
Sbjct: 121 DGLSISLIYLDGVLSEALTRGDGVFGESVIANIKTIKTIPLKINTTIKKIV-IRGEVYVS 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
             DF A+N        K +AN RN ASG LR ++ +++  R LN F + +    E+  + 
Sbjct: 180 NQDFEAINASRDE--DKKFANSRNYASGSLRNIDVSEVAKRKLNAFFYYIPNAYELGFET 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           QY+++Q+++  GF V   ++  +    + +   E+++ ++ L Y IDG V K + F   +
Sbjct: 238 QYQVIQQLKEWGFNVAKEIKLFSNIKELYTSLKELENNKNKLDYRIDGAVIKYNNFKDYE 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            +G  ++ P+W I++KFA  Q  T+L DI + +GRTG LT VA+L P+ + G++IT ATL
Sbjct: 298 IIGYTSKFPKWAIAYKFAPTQVQTQLKDIILNVGRTGKLTFVAQLAPIELEGSIITYATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN +YI  L           DIR+ D V + +A E+IPKV+ + +++R  +A+   F   
Sbjct: 358 HNLEYINDL-----------DIRINDYVYLIKAAEIIPKVIGVNLDKRPNNAKKLEFDYN 406

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   +V+              C     C  +QL+ L ++ S+   NIEGL +  L  
Sbjct: 407 CPSCHQPLVKKPEE------VDWYCIYD-QCKQKQLQYLIYYCSKPIMNIEGLSESTLAL 459

Query: 494 FFKSE-----------------------------DPAFSIRIPADIFTLQRRQQTSTTKI 524
           FF ++                             +    +    DI+ L+R ++      
Sbjct: 460 FFNTKVNDVIRECNELITNQNVNEDLSLFKLLDNEEQTFVNSVLDIYQLERYKEIIIKPW 519

Query: 525 ENI----------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
                          F D S   L +SIN+ +N  L R + +L I+++G   A+S+A  Y
Sbjct: 520 LKKGFSKSSLKYNFRFQDKSFDKLINSINESKNRELYRLLAALNIKYIGIATAKSIANTY 579

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KE 631
                   +I+ + +   +D+   +R+  +  I A ++  F+ + +N   +E L      
Sbjct: 580 -------HDIDQLKSLTVEDY---MRLADISSITANSLFSFFSDEKNWELIEQLKTLSIN 629

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
               I     + SS   +KK V TG+    +    ++   +      + +S+  D ++ G
Sbjct: 630 TKDEINNDLVDSSSIYYDKKFVITGSFSISRNDIIKKLSLKYKIKFVSGVSKNVDFVLAG 689

Query: 692 DNPGS-KLEKAQQLGVKIMNEEQF 714
           ++P + K+ +A+ L + I+ EE +
Sbjct: 690 NSPTAKKINQAKVLNIPIIQEEIW 713


>gi|166032192|ref|ZP_02235021.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC
           27755]
 gi|166027915|gb|EDR46672.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC
           27755]
          Length = 690

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 194/711 (27%), Positives = 313/711 (44%), Gaps = 60/711 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K + +L ++++ +   YY    P++ D+EYD L      +      +      N P   +
Sbjct: 30  KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDELKELEEQTGFILS----NSPTQTV 85

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G      L KVTH IP LSLEK   I +L  F+              + F    K+DG  
Sbjct: 86  GYYPVSELAKVTHPIPLLSLEKTKLISELLDFMK----------GQEVLFM--LKLDGLT 133

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
             + YE G+ + A+ RGDG  GED++  I A   +P  L++   E + + GE +I  NDF
Sbjct: 134 TKLIYEDGRLIQASTRGDGEVGEDITHNIPAFLNVP--LTIPHKERLVITGESFIPTNDF 191

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE--IFAKGQY 255
             L D +     KPY N RN ASG +R L+P + I R + F    + +  E   F   + 
Sbjct: 192 ERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLEGMEDVPFPDSRA 251

Query: 256 EMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             L+ +  LGF        + T         +  E+ S  + L   IDG+V   D  S  
Sbjct: 252 CKLEGLTHLGFGYCPFFSISGTGLSKEYAEKFIQELVSTAANLHLPIDGIVMIFDSLSYS 311

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K  G+     +  +++KF +    T L +I+    R G + PV   + V I G  ++ A+
Sbjct: 312 KSCGKTGHHYKDGLAYKFEDDTYETFLREIEWTPTRFGEIAPVGIFDTVEIDGCDVSRAS 371

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN  +IK L+           +  G R+LV +   +IP + D +   R+ D      P 
Sbjct: 372 LHNLTFIKNLE-----------LVPGCRILVSKRNMIIPHIEDNLDRGRYTD----ITPP 416

Query: 433 FCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            CP C S+          G+ V    C     C +Q   R  HF S+ A NIEGL +  L
Sbjct: 417 VCPCCGSKTRTYSRKTSDGRTVETLHCDNP-QCDSQITRRFVHFASKKAMNIEGLSEATL 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F         +    DI+ L+  +      I  + G+G+ S   L++SIN  R  S  
Sbjct: 476 EKFLN----LGYLHSFQDIYHLEEHR----EDIVALDGYGEKSFDRLWESINASRRTSFV 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           R++ S+ I  +G   +R L   +  +   F Q           D+    ++   G+I+  
Sbjct: 528 RYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQA-------AVGDY-DFTQLEDFGEILNH 579

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQE 668
            I  ++ +  N+   + L  E +    + E  +   ++     +V TG L+   R    +
Sbjct: 580 NIHSWFADEANLDLWKNLQNEFTFEQRKEETIMTKENKFTGCTIVATGKLEHFTRDGIND 639

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + +LGA   + +++KTD +I G+  GSKL KAQ LG+ I+ E +FL ++ 
Sbjct: 640 KILELGAKPGSSVTKKTDYLICGEKAGSKLAKAQSLGIPILTEAEFLEMIA 690


>gi|111115379|ref|YP_709997.1| DNA ligase [Borrelia afzelii PKo]
 gi|123145685|sp|Q0SMV7|DNLJ_BORAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110890653|gb|ABH01821.1| DNA ligase [Borrelia afzelii PKo]
          Length = 660

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 207/709 (29%), Positives = 352/709 (49%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +    P+       + P 
Sbjct: 4   KIQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKCPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS+P LSL+K++N++ L+ +I +I         NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSVPVLSLDKVYNLDLLKSWIDKI------DFSNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  IR I  +P  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHVPLFLGEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLDFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVRQAN---TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++K++ LGF VN  +R  +   +   +++Y  ++   R++  Y+IDG+V KV +F+L
Sbjct: 228 NLAIEKLKKLGFKVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG     P+W +++KF      +++  I +Q+GR+G +TPVA ++ V + GA ITNA
Sbjct: 288 REKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFITNA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  ++           + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYITSIN-----------LNVGDIVKVSRRGDVIPAVEMVI---NKFSTGFFKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++         A   CT    C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DKCPSCKTVVVKE--------GAHFFCTNN-NCPSVAVERIKYFCSKNCMDIEGFSDKTI 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T    +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FISSEIDLYTFNFYKLL------KFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +    +  +L+L+++  +G+ IA  
Sbjct: 495 KLLLSIGIKELGENTIRLL---FLNNLNSFSKLFRLCQDRDFAFLTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I++ + N   I   +           R   +  ++ +  KK   TG+     R    + +
Sbjct: 552 IIDAFNNSIMINKFKVFENLGFKMEERILIDDENKLLVGKKFCITGSFNGYSRPIVIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+    +++  D ++VG+  G+KL+KA  L VKIM+ E     L 
Sbjct: 612 ENKGAIFKTCVTKGLDFLVVGEKAGTKLKKALNLNVKIMSFEDIKSYLD 660


>gi|225419696|ref|ZP_03761999.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme
           DSM 15981]
 gi|225041660|gb|EEG51906.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme
           DSM 15981]
          Length = 654

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 198/712 (27%), Positives = 322/712 (45%), Gaps = 67/712 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   + +  L   +S     YYQ S+ I+ + EYD L     A+               
Sbjct: 1   MEDRIERMKELVSLLSKAGKAYYQESREIMSNFEYDRLYDELTALERE----TGVTLSGS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E+   L K TH  P LSL+K  ++EDL+ ++                  L  K
Sbjct: 57  PTKRVGYEVLSELPKETHESPMLSLDKTKSVEDLQAWL------------GDQKGLLSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y+ G  V A  RG+G  GE ++   R    IP  L++    ++ +RGE  I
Sbjct: 105 MDGLTIVLTYDGGTLVKAVTRGNGEIGEVITPNARVFANIP--LNIAHKGLVVLRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FA 251
             +DF  +N+E+  V  K Y NPRN  SG +R+LN      R ++F    L +   + F 
Sbjct: 163 LYSDFRRINEEIEDVDAK-YKNPRNLCSGSVRQLNSQITAERNVHFEAFSLVRAEGVDFE 221

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             +    + ++  GF V +      T   +     E            DGLV   D+ + 
Sbjct: 222 NSRKRQFEWLKSQGFEVVDYREV--TAETLPQAVQEFADAVEGYDIPSDGLVLLFDDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR  I+ K+ ++   T++  I+    RTG++ PVA  EPV + G  ++ A
Sbjct: 280 GESLGRTAKFPRNSIAFKWQDEIRETKMRYIEWSPSRTGLINPVAVFEPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++GL+   +           DR+ V +A  +IP++ D +       +     P
Sbjct: 340 SVHNISILEGLELGEE-----------DRITVYKANMIIPQIADNLTR-----SGVKHIP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C               V +  C     C A++++     VSRDA NI+GL +  L
Sbjct: 384 EQCPVCGGATEIRQV----NDVRSLYCINP-DCQAKKIKSFTLLVSRDALNIDGLSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F      A  I   ADIF L R Q+        + GFG  S  NL  S+ K  + +L 
Sbjct: 439 EKFI----GAGFIHEYADIFHLDRHQEAIVE----MEGFGQKSYDNLVASVAKAADTALP 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           R I+ LGI  +G   A++L +++   ++N  +           D   L+ V  +G ++A+
Sbjct: 491 RVIYGLGIAGIGLANAKALCRHFGYEFENMRKA----------DEEELVAVDGIGAVLAK 540

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEY 669
           A +E++ +  N  AV+ L  E++      E+        K  V TG+L+    R + QE 
Sbjct: 541 AWMEYFSSEANNEAVDHLFAELTIEKEVVEE-TEQIFAGKTFVITGSLEHFGNRKELQEL 599

Query: 670 VTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +   G   +  +S KT  +I  D  +P SK +KA+ LGV I+ EE+FL +L+
Sbjct: 600 IESKGGKAAGSVSAKTSYLINNDSLSPSSKNKKAKDLGVPIITEEEFLRMLE 651


>gi|226321858|ref|ZP_03797384.1| DNA ligase, NAD-dependent [Borrelia burgdorferi Bol26]
 gi|226233047|gb|EEH31800.1| DNA ligase, NAD-dependent [Borrelia burgdorferi Bol26]
          Length = 660

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 204/709 (28%), Positives = 346/709 (48%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 228 DLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKFSTGFFKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++         A   C     C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE--------GAHFFCPNN-NCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T    +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFDFYKLL------EFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I+E + +   +   +               +  ++ +  KK   TGT     R    + +
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 612 KNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|221218112|ref|ZP_03589578.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 72a]
 gi|221192060|gb|EEE18281.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 72a]
          Length = 660

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 204/709 (28%), Positives = 346/709 (48%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 228 DLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKFSTGFFKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T    +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFDFYKLL------EFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I+E + +   +   +               +  ++ +  KK   TGT     R    + +
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIIIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 612 KNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|218249478|ref|YP_002375058.1| DNA ligase, NAD-dependent [Borrelia burgdorferi ZS7]
 gi|254781261|sp|B7J2B3|DNLJ_BORBZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218164666|gb|ACK74727.1| DNA ligase, NAD-dependent [Borrelia burgdorferi ZS7]
          Length = 660

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 204/709 (28%), Positives = 346/709 (48%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 228 DLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADIIKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKFSTGFFKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++         A   C     C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE--------GAHFFCPNN-NCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T    +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFDFYKLL------EFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I+E + +   +   +               +  ++ +  KK   TGT     R    + +
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 612 KNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|332141274|ref|YP_004427012.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551296|gb|AEA98014.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 517

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 197/554 (35%), Positives = 300/554 (54%), Gaps = 42/554 (7%)

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DIT 233
            +     P+ +EVRGEV++ +  F  LN+     G K +ANPRNAA+G LR+L+      
Sbjct: 1   MLRGDAHPDRVEVRGEVFMPREGFAKLNEHQKNAGGKVFANPRNAAAGSLRQLDSKITAK 60

Query: 234 RYLNFFVHGLGKTSE---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
           R L F+ + LG              E L ++   G P+   +  A    G + YY+ +  
Sbjct: 61  RPLMFYAYSLGVVQPDNFTLPTTHSERLSQLGKWGLPLCPDIDTAEGGRGCLDYYHHILE 120

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  LPYDIDG+V+KV+   LQ  LG  AR+PRW I+ KF  ++  T+LLD++ Q+GRTG
Sbjct: 121 KRDNLPYDIDGVVFKVNRIDLQAALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTG 180

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVARLEPV +GG  ++NATLHN+D I  L            ++VGD V+++RAG+VI
Sbjct: 181 AITPVARLEPVFVGGVTVSNATLHNQDEITRL-----------GVKVGDTVVIRRAGDVI 229

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+VV ++  +R       +FPS CP+C S+V +  +       A  RCTGGL C+AQ+ +
Sbjct: 230 PQVVSVVDTKRTGSETDIAFPSQCPVCGSQVEKLEDE------AVARCTGGLICAAQRKQ 283

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            LKHF SR AF+I+GLG + +D        A  +  PAD FTL      S   +  +   
Sbjct: 284 ALKHFASRKAFDIDGLGDKLVDQLVD----ADLVHSPADFFTL------SLGDVVGLERM 333

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
            + S + L  S+   +  +L +F+++LGIR VG   A +LA ++ +            A 
Sbjct: 334 AEKSASKLLSSLEASKQTTLAKFLYALGIREVGEATAANLAAHFETLD----------AI 383

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIEN 649
            +    +L+ V  VG+I+A  I  F+    N   ++ALLKE        + +  +  +E 
Sbjct: 384 RDASIEALVEVQDVGEIVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDADNLPLEG 443

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K  V TGTL ++ R  A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+L V++ 
Sbjct: 444 KTCVITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELDVEVW 503

Query: 710 NEEQFLFLLQQYNT 723
           +E + +  L +   
Sbjct: 504 DEAKLIAFLAENEK 517


>gi|224532693|ref|ZP_03673310.1| DNA ligase, NAD-dependent [Borrelia burgdorferi WI91-23]
 gi|224512311|gb|EEF82695.1| DNA ligase, NAD-dependent [Borrelia burgdorferi WI91-23]
          Length = 660

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 204/709 (28%), Positives = 346/709 (48%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 228 DLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKFSTGFFKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T    +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFDFYKLL------EFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I+E + +   +   +               +  ++ +  KK   TGT     R    + +
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 612 KNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|224533503|ref|ZP_03674092.1| DNA ligase, NAD-dependent [Borrelia burgdorferi CA-11.2a]
 gi|224513176|gb|EEF83538.1| DNA ligase, NAD-dependent [Borrelia burgdorferi CA-11.2a]
          Length = 660

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 203/709 (28%), Positives = 345/709 (48%), Gaps = 57/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++EPKID
Sbjct: 61  LKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +FL +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                +++ LGF VN  +R     N+   +++Y  ++   R +  Y+IDG+V KV +F+L
Sbjct: 228 DLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA IT+A
Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI+ +            + VGD V V R G+VIP V  +I          F  P
Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKFSTGFFKVP 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKTAVVKE---------GAHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++T    +           GF D  + NL +SI   +     
Sbjct: 445 SFLFEKK----FIFSEIDLYTFDFYKLL------EFKGFKDRKINNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G      L   + +  N   ++  +       + +L+++  +G+ IA  
Sbjct: 495 KLLLSMGIKDLGENTIMLL---FFNNFNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYV 670
           I+E + +   +   +               +  ++ +  KK   TGT     R    + +
Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVIDKL 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 612 KNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|153853203|ref|ZP_01994612.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814]
 gi|149753989|gb|EDM63920.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814]
          Length = 692

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 196/719 (27%), Positives = 317/719 (44%), Gaps = 64/719 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +++SI    K + +L ++++ +   YY    P++ D+EYD L  +   +      +    
Sbjct: 25  DSMSI----KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDKLKKLEEQTGFILS-- 78

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             N P   +G      L KVTH  P LSLEK   I +L  F+              + F 
Sbjct: 79  --NSPTQTVGYYPVSELAKVTHPTPLLSLEKTKLISELLDFMK----------GQEVLFM 126

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
              K+DG    + YE GK + A+ RGDG  GED++  I A   +P  L++   E + + G
Sbjct: 127 --LKLDGLTTKLIYEDGKLIQASTRGDGEVGEDITHNIPAFLNVP--LTIPHKERLVITG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE 248
           E +I  NDF  L D +     KPY N RN ASG +R L+P + I R + F    + +  E
Sbjct: 183 ESFIPTNDFERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLEGME 242

Query: 249 --IFAKGQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLV 303
              F   +   L+ +  LGF        + T         +  E+ S  + L   IDG+V
Sbjct: 243 DVPFPDSRACKLEGLTHLGFGYCPFFSISGTGLSREYAEKFIQELVSTAANLHLPIDGIV 302

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
              D  S  K  G+     +  +++KF      T L +I+    R G + PV   + V I
Sbjct: 303 MIFDSLSYSKSCGKTGHHYKDGLAYKFENDTYETVLREIEWTPTRFGEIAPVGIFDTVEI 362

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A+LHN  +IK L+           +  G R+LV +   +IP + D +   R+ 
Sbjct: 363 DGCDVSRASLHNLTFIKNLE-----------LVPGCRILVSKRNMIIPHIEDNLDRGRYT 411

Query: 424 DAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           D      P  CP C S+          G+ V    C     C +Q   R  HF S+ A N
Sbjct: 412 D----ITPPVCPCCGSKTRTYSRKTSDGRTVETLHC-NNPQCDSQITRRFVHFASKKAMN 466

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGL +  L+ F         +    DI+ L+  +     +I  + G+G+ S   L++SI
Sbjct: 467 IEGLSEATLEKFLN----LGYLHSFQDIYHLEEHR----EEIVALDGYGEKSFDRLWESI 518

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRV 601
           N  R  S  R++ S+ I  +G   +R L   +  +   F Q           D+    ++
Sbjct: 519 NASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQA-------AVGDY-DFTQL 570

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQ 659
              G I+   I  ++ +  N+   + L  E +    + E  +   ++     +V TG L+
Sbjct: 571 EDFGKILNHNIHSWFADEANLDLWKNLQNEFTFEQRKEEPIMTKENKFTGCTIVATGKLE 630

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              R    + + +LGA   + +++KTD +I G+  GSKL KAQ LG+ I+ E +FL ++
Sbjct: 631 HFTRDGINDKILELGAKPGSSVTKKTDYLICGEKAGSKLAKAQSLGIPILTEAEFLEMI 689


>gi|255316598|ref|ZP_05358181.1| DNA ligase, NAD-dependent [Clostridium difficile QCD-76w55]
          Length = 663

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 204/713 (28%), Positives = 337/713 (47%), Gaps = 58/713 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  +++  L +E+  HD  Y     PII D+EYD L  +   +   +P+     D N 
Sbjct: 1   MNKVEEKIRDLREEVIKHDLAY-AKGDPIISDTEYDKLYLKLVGLEELYPEY---SDENS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  +I       L KV H+IP LS +KI   ++L KFI ++               +E K
Sbjct: 57  PTKRIIDIKVEGLKKVEHTIPMLSQKKINTPDELDKFIRQMNDEL----------LVEDK 106

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +  +Y  G       RGDG  G+D++  +   P IP+ +  N  + +E+R E  I
Sbjct: 107 LDGLTVIAKYNNGVLYEGITRGDGKIGDDITHIVLNTPNIPKTIPFN--DYLEIRLEGII 164

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
              DF  +N  +    +  Y + RN ASG +R LN      R L      L K   I  +
Sbjct: 165 PNEDFEMVNSILEEEDK--YKSSRNLASGTVRSLNGCVAKERGLKLIAFELVKADNIIFE 222

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM----KSIRSTLPYDIDGLVYKVDE 308
             YE L+ ++ LGF V N          I+   + +    + +R  L Y +DGLV K + 
Sbjct: 223 KDYERLEFLKTLGFDVVNYTLFKKNEEDILKLKDYIFSYNQEVRPFLSYKVDGLVIKANS 282

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             L+  LG  ++ P+W  + KF  ++A T+L D  I++G++G LTPVA  EPV I G  I
Sbjct: 283 LELRDSLGNTSKYPKWSSAFKFENEEAITKLKDCIIEVGKSGQLTPVALFEPVQIDGITI 342

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATL N   +K            +DI++GD V+V RA +VIPK+   I  +R  + +  
Sbjct: 343 SKATLSNFKNVKD-----------KDIKIGDMVVVARANDVIPKIEHSIKEDRTGEEKEI 391

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P FCP+C   +V++           H       C AQ   ++ HFVS+ + +I+GLG+
Sbjct: 392 EIPKFCPVCNEPIVKE---------NVHYFCVNDDCPAQIEGKIIHFVSKKSLDIDGLGE 442

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +  F  +      I    DIF      +     +  +  + D  V+NL ++I   +  
Sbjct: 443 ESIKLFLDN----GLISSIIDIF----YLKDKKDDLLKLDKYADKKVSNLLENIEASKQA 494

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL + +  L I+ +G   ++ LA  ++S +N    I NI  +  +   S++ +   G+ +
Sbjct: 495 SLSKILHGLSIKLIGGRASKELANKFISMKN----ILNISKNEEEFKQSILSINNFGEEM 550

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +  +V F+++ RNI  +  L++       +        + +  K +V TG      R + 
Sbjct: 551 SNNLVLFFKDERNIELINKLMEVGFKMEEQIVKVNEEENMLTGKTVVITGKFTDFTREEL 610

Query: 667 QEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            E +    G   S  +S+KTD +I GD  GSK  KA +LGVK++ E++ L ++
Sbjct: 611 TEKIENEFGGKCSKSVSKKTDFLIYGDKAGSKYNKALELGVKLITEKELLDII 663


>gi|331086070|ref|ZP_08335153.1| DNA ligase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406993|gb|EGG86498.1| DNA ligase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 653

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 187/711 (26%), Positives = 320/711 (45%), Gaps = 67/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ ++ +  L Q ++     YYQ +K I+ + EYD L      +             N 
Sbjct: 1   MEQKKQRMQELVQLLNQAGKAYYQDAKEIMSNHEYDRLYDELLVLEQE----LGITMANS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K    + L++F+                  +  K
Sbjct: 57  PTVNVGYEVLSELPKERHEKPMLSLDKTKETDRLKEFV------------GEKKAVISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + YE G+   A  RG+G  GE ++   +    +P  L +     + +RGE  I
Sbjct: 105 LDGLTIVLTYENGELKKAVTRGNGEVGEVITNNAKVFQNVP--LRIAYRGELILRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI-FA 251
              DF  +N+E+  V  K Y NPRN  SG +R+LN     R  + F+   L K   + F 
Sbjct: 163 GYRDFEKINEEIEDVDAK-YKNPRNLCSGSVRQLNNEITARRNVQFYAFSLVKADGVDFQ 221

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +   L+ ++  GF V        +T    V ++ E            DGLV   D+ +
Sbjct: 222 NSRNIQLEWLKEQGFDVVEHYEVTKDTLEERVRFFAEHIE---ENDIPSDGLVLTYDDIA 278

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             + LG  A+ PR   + K+A++   T L +I+    RTG++ PVA  +PV + G  ++ 
Sbjct: 279 YGQSLGSTAKFPRDSFAFKWADEIRETTLREIEWSPSRTGLINPVAIFDPVELEGTTVSR 338

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN   ++ L+           + +GD + V +A  +IP++ + +       +     
Sbjct: 339 ASVHNLSIMEELE-----------LGIGDTIQVYKANMIIPQIAENLTR-----SGMDPV 382

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C           T        CT    C A+ ++    FVSRDA NI+GL +  
Sbjct: 383 PECCPACGGETEIRQVSDT----KTLYCTNP-ECGAKHIKAFSLFVSRDALNIDGLSEAT 437

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+ F         I   +DIF L+R       +I ++ GFG+ S  NL DSI K R  +L
Sbjct: 438 LEKFITR----GFIHHFSDIFHLERH----GEEIRSMEGFGEKSYKNLQDSIEKARTTTL 489

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + I+ LGI ++G   A+ + + +        ++  ++     D  +L  +  VGD+IA+
Sbjct: 490 PKLIYGLGIANIGLSNAKMICRAF------DYDVEKMLQA---DVEALNEIQGVGDVIAR 540

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEY 669
           A V+++    +      LL+EV        +           V TG+++    R++ +E 
Sbjct: 541 AFVDYFAVEDHREEFFRLLEEVKIPEEETTQEEQ-IFAGMNFVITGSVEHFANRNEVKEV 599

Query: 670 VTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +   G  V+  ++ KT+ +I    ++  SK +KA++LG+ I++E+ FL ++
Sbjct: 600 IESKGGKVTGSVTSKTNWLINNDVESTSSKNKKARELGIPIISEDTFLKMI 650


>gi|239624075|ref|ZP_04667106.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522106|gb|EEQ61972.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 650

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 196/710 (27%), Positives = 323/710 (45%), Gaps = 65/710 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   + +  L   +      YYQ S+ I+ + EYD L     ++      +        
Sbjct: 1   MEDRIQRMKELVSTLRQAGKAYYQESREIMSNFEYDRLYDELCSLEKETGIIMSG----S 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E+   L K TH  P LSL+K  ++EDL+ ++                  L  K
Sbjct: 57  PTQRVGYEVLSELPKETHESPMLSLDKTKSVEDLQSWL------------GDQKGLLSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + YE G+   A  RG+G  GE ++   R    +P  L+++    + +RGE  I
Sbjct: 105 MDGLTIVLTYEGGRLTKAVTRGNGEIGEVITPNARVFANVP--LNISYEGQLILRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FA 251
           + +DF  +N+E+  V  K Y NPRN  SG +R+LN      R ++F    L +   + F 
Sbjct: 163 TYSDFKRINEEIEDVDAK-YKNPRNLCSGSVRQLNSQITAERNVHFEAFALVRADGVDFG 221

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             +    + +R  GF V +      T   +    N             DGLV   D+ + 
Sbjct: 222 NSRKRQFEWLREQGFEVVHYEEV--TAENLPEAVNGFAEAVEGNDVPSDGLVLTFDDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR  I+ K+ ++   TRL  I+    RTG++ PVA  +PV + G  ++ A
Sbjct: 280 GEALGRTAKFPRNSIAFKWQDEIRETRLDYIEWSASRTGLINPVAVFDPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++ L           D+  GD + V +A  +IP++ D +       +     P
Sbjct: 340 SVHNLSIMEAL-----------DLGQGDTITVYKANMIIPQIADNLTR-----SGVRDIP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C      +   K    V +  CT    C A++++    FVSRDA NI+GL +  L
Sbjct: 384 KECPVCGG----ETQIKQMNDVKSLYCTNP-DCQAKKIKSFTLFVSRDALNIDGLSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F      A  I   ADIF L+  +         + GFG  S  NL  SI    N +L 
Sbjct: 439 EKFI----GAGFIHEYADIFHLEEHKDAIVE----MEGFGQKSYDNLIASIKTASNTTLP 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGI  +G   A+ L + + S      +   +     D+    + V  +G ++AQA
Sbjct: 491 RMVYGLGIAGIGLANAKMLCREFKS------DFEKMRHAQADEL---VAVDGIGGVLAQA 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
            ++++ + +N  AV+ LLKE++    + E    +  E    V TG+++    R + QE +
Sbjct: 542 WMDYFASEKNNLAVDHLLKELTIEAEQVETM-DAIFEGMTFVITGSVEHFANRKELQEVI 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLL 718
              G   +  ++ KT  +I  D     SK +KA+ LGV I++EE+FL +L
Sbjct: 601 ESRGGKATGSVTAKTTYLINNDVASNSSKNKKAKDLGVPIISEEEFLRML 650


>gi|310830411|ref|YP_003965512.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2]
 gi|309249878|gb|ADO59444.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2]
          Length = 662

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 205/715 (28%), Positives = 339/715 (47%), Gaps = 63/715 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I  A++ +  L  EI  HD+ Y Q+ KP+I D EY+ L      +   +P+      P+
Sbjct: 3   TIFNAQQRIKQLTSEIRKHDELYDQF-KPVISDQEYNNLYYELLDLEKQYPEFVI---PD 58

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P +KI   +   L KV HS    S EK+   +++  F+ R                ++ 
Sbjct: 59  SPTHKIYTVLVDGLEKVRHSSFMGSQEKMKTWDEVVSFMNRY----------EGKVLVQH 108

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  I + Y  G    A  RG+G  G+++   +R I  +P  +       +E+R E  
Sbjct: 109 KLDGLTIVLTYMDGLLQKAVTRGNGEIGQNIIHTVRTIKNVPANIPFK--GRLEIRMEGI 166

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           I   +F  +N +        ++NPRN  SG L +LN +  + R +   V  +     +  
Sbjct: 167 IPYAEFERINVDGA------FSNPRNLVSGTLNQLNASIASERNVQGIVFDIVHIEGMTF 220

Query: 252 KGQYEMLQKMRCLGFPVNNGV---RQANTFHGIVSYYNEMKSI-RSTLPYDIDGLVYKVD 307
               E L+ ++  GF     V   +       + +Y  EM+   R TLP+ IDGLV K D
Sbjct: 221 NKISEQLRFLKEQGFTTVESVAFEQTVEGLSQMNAYLQEMEENTRKTLPFMIDGLVIKFD 280

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E S +++LG  ++ PRW  ++KFA  +A+T +L ++  + RTG +TPVA L  V+I    
Sbjct: 281 ELSAKEKLGNTSKHPRWSAAYKFASLEATTTILGVEHSVARTGQITPVALLNTVDIDSVD 340

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+L N   I+            +DIR+GDRV V RA +VIP+V   I   R  + Q 
Sbjct: 341 VSRASLANYGMIEK-----------KDIRIGDRVFVIRANDVIPQVTASIKEMRTGNEQL 389

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP C S           + V A+    G  CS Q   +++HF SR A NI  LG
Sbjct: 390 IQTPTCCPKCGSPT---------EFVGAYLYCRGEQCSPQLQGKIEHFASRKALNINSLG 440

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              ++ FFK+      IR   D++ LQ ++     +I ++ GFG  S T L   + + + 
Sbjct: 441 TSTVELFFKN----GIIRHFLDLYNLQEKE----EQICSLEGFGKKSFTKLQKELERVKK 492

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L + + +L ++H+G   ++ L+K Y           +      D   +L+ +P  G  
Sbjct: 493 EPLHKVLIALSVKHLGETKSKELSKVYKDIDAIMNASEDA----EDFRAALLALPDFGSA 548

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRH 664
           I  +IV F+ +      +  +           + N+S     +  + +V TGTL  + R 
Sbjct: 549 ITDSIVAFFTSEEGRSLIRKMQSIGFTMKSEFDTNISQENLPLSGQTVVVTGTLGAMGRD 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+E +  LGA VS  +S+KT  ++VG    SK +KA +LGV+++ E++FL ++ 
Sbjct: 609 EAKEKLEALGAKVSGSISKKTSFVVVGTGK-SKHDKAIELGVRVVYEDEFLQIIA 662


>gi|225569253|ref|ZP_03778278.1| hypothetical protein CLOHYLEM_05335 [Clostridium hylemonae DSM
           15053]
 gi|225162052|gb|EEG74671.1| hypothetical protein CLOHYLEM_05335 [Clostridium hylemonae DSM
           15053]
          Length = 648

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 191/707 (27%), Positives = 325/707 (45%), Gaps = 69/707 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L ++++     YYQ ++ I+ + EYD L     ++     +L  +     P   +G 
Sbjct: 1   MQELVEQLNKAGKAYYQDAEEIMSNYEYDRLYDELVSLEK---ELGITLS-GSPTANVGY 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E+   L K  H  P LSL+K  ++E+L+KF                   +  K+DG  I 
Sbjct: 57  EVLSELPKERHDSPMLSLDKTKDVEELKKFA------------GGQKVMMSWKLDGLTIV 104

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G    A  RG+G  GE ++   R    IP  L +     + +RGE  I   DF  
Sbjct: 105 LTYRDGTLYKAVTRGNGEVGEVITNNARVFRNIP--LQIAYKGELILRGEAVIGYKDFEK 162

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQYEML 258
           +N E+  V  + Y NPRN  SG +R+LN      R + F+   L +   + F   +   +
Sbjct: 163 INGEIEDVDAR-YKNPRNLCSGSVRQLNNEITAKRNVRFYAFTLVQADGVDFHNSRVCQM 221

Query: 259 QKMRCLGFPVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           + +R  GF V              ++ +  ++    +   +  DGLV   D+    + LG
Sbjct: 222 EWLREQGFEVVEFCEVTKDTLEAEVIKFSEKI----AENDFPSDGLVLVYDDVEYGRSLG 277

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++ PR   + K+A++   T+LL+I+    RTG++ PVA  EPV + G  ++ A++HN 
Sbjct: 278 RTSKFPRDSFAFKWADETKETKLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNL 337

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             ++ L+           + VGD + V +A  +IP++ + +      D      P  CP+
Sbjct: 338 SIMEELE-----------LGVGDEIEVYKANMIIPQIAENLTRSGVKD-----IPLHCPV 381

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C          K      A  C     C A+ L+    FVSRDA NIEGL +  L+ F  
Sbjct: 382 CGGDTE----VKQVSNAKALYCINP-DCQAKHLKSFALFVSRDALNIEGLSEATLEKFIA 436

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  ADIF L+R Q     +IE + GFG+ S  NL +SI K R  +L + I+ 
Sbjct: 437 K----GYIKEYADIFHLERFQ----DEIEKMEGFGEKSYRNLIESIEKARTTTLPKVIYG 488

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI ++G   A+ +   +        + + ++A   ++      +  VG +IA A V+++
Sbjct: 489 LGIANIGLANAKMICSEFG------CDTDKMLAAGPEEL---SAIQGVGGVIAGAFVDYF 539

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGA 675
            + R++     LLKE++      E+           V TG+++    R + +E +  LG 
Sbjct: 540 SDERHVRIFRDLLKELTIPAEETEQK-EQRFAGVNFVITGSVEHFANRGEIKELIENLGG 598

Query: 676 VVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V+  ++ KT+ +I  D  +  SK +KA +LG+ I++E+ FL +L +
Sbjct: 599 KVTGSVTSKTNYLINNDVTSTSSKNKKANELGIPIISEKDFLEMLGE 645


>gi|154484656|ref|ZP_02027104.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC
           27560]
 gi|149734504|gb|EDM50421.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC
           27560]
          Length = 655

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 200/704 (28%), Positives = 317/704 (45%), Gaps = 67/704 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L + ++  +  YYQ +  I+ + EYD L      +      +      N P   +
Sbjct: 5   ERIKDLVELLNKANKAYYQEANEIMTNFEYDKLYDELVGLEKETGMVLS----NSPTVNV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++   L K  H+ P LSL+K   +  L  F                   L  K+DG  
Sbjct: 61  GYQVVSQLPKEQHNSPMLSLDKTKEVGALADFA------------GDRKCLLSWKMDGLT 108

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G+ V A  RG+G  GE ++   +    IP  +S+     + +RGE  I  +DF
Sbjct: 109 VVLTYENGELVKAVTRGNGLVGEVITNNAKTFKNIP--ISIPYKGRLTLRGEAIIKYSDF 166

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N E+     K Y NPRN  SG +R+LN      R +NF    L    ++      E 
Sbjct: 167 EQINREIEDADSK-YKNPRNLCSGSVRQLNSQVTAERNVNFVAFALINADDVDFDNSIEQ 225

Query: 258 -LQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             + M   GF V        N+    V Y+        T  Y  DGLV   D+      L
Sbjct: 226 QYKWMESQGFQVVEYRVVTRNSMEDAVKYFA---GKIQTYDYPSDGLVLMFDDIEYGLSL 282

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+ PR  I+ K+ ++QA T L  I+    RTG++ PVA  EPV + G  ++ A++HN
Sbjct: 283 GTTAKFPRNGIAFKWEDEQAETTLKYIEWSPSRTGLINPVAVFEPVELEGTTVSRASVHN 342

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              ++ L+              GDR+ V +A  +IP++ + +      D      P  CP
Sbjct: 343 ISIMEELELGS-----------GDRIKVYKANMIIPQISENLTKSGIDD-----LPKECP 386

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C          K    +    C     C A+ ++    FVSR+  NI+GL ++ L+ F 
Sbjct: 387 VCGHATE----VKAENGIKTLYCPNS-QCPAKHVKLFTLFVSRNGMNIDGLSEETLEKFI 441

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  I+  ADIF L R       +I    GFG  S  NL DS+ K RN+ L   I+
Sbjct: 442 D----AGYIKEFADIFHLDRYY----EEIVATPGFGQKSYDNLMDSVEKARNVELSALIY 493

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGI ++G+  A+ + K +          NNI    N     LI +  +G+I+A+   ++
Sbjct: 494 SLGIPNIGSANAKLICKAFN---------NNIEKIRNASVEELIEIDGIGEIMAEKFCQY 544

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLG 674
           + +  NI  ++ LLKEV+ +    E      ++    V TG+++    R++ + Y+ + G
Sbjct: 545 FADEDNIKKLDNLLKEVNIA-EPEENTTPQNMDGLTFVITGSVEHFANRNELKSYIEKHG 603

Query: 675 AVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
             V+  +S KT+ +I  D  +  SK +KA+QLGV+I+ EE FL 
Sbjct: 604 GKVTGSVSAKTNYLINNDAMSASSKNKKAKQLGVEIVTEEVFLE 647


>gi|166030629|ref|ZP_02233458.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC
           27755]
 gi|166029631|gb|EDR48388.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC
           27755]
          Length = 647

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 176/705 (24%), Positives = 325/705 (46%), Gaps = 65/705 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L + ++     YYQ ++ I+ + EYD L      +     +L  +   N P  ++G 
Sbjct: 1   MKELVELLNKASKAYYQDAEEIMSNYEYDKLYDELQELER---ELGITLS-NSPTVRVGY 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E+   L K  H  P LSL+K  ++E+L+ F+                  +  K+DG  I 
Sbjct: 57  EVVSELPKERHESPMLSLDKTKDVEELKNFV------------GDQKALMSWKMDGLTIV 104

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G    A  RG+G  GE ++   +    +P  L ++    + +RGE  I   DF  
Sbjct: 105 LTYRGGHLFKAVTRGNGEVGEVITNNAKVFKNVP--LQISYQGELILRGEAVIGYKDFEK 162

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQYEML 258
           +N+++       Y NPRN  SG +R+LN      R + F+   L    ++ F   +   +
Sbjct: 163 INEQIQEA-EAKYKNPRNLCSGSVRQLNSEITAKRNVKFYAFTLVSAKDVDFHNSRACQM 221

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + ++  GF V            + +   +     +   +  DGLV   D+ +  + LG  
Sbjct: 222 EWLKEQGFEVVEYHEVIR--DTVEAEVIKFSEKIAENDFPSDGLVLVYDDIAYGRSLGRT 279

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           ++ PR   + K+A++   T+LL+I+    RTG++ PVA  EPV + G  ++ A++HN   
Sbjct: 280 SKFPRDSFAFKWADEIRQTKLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISI 339

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++ L+           + VGD + V +A  +IP++   +      D      P  CP+C 
Sbjct: 340 MEELE-----------LGVGDEIEVYKANMIIPQIAQNLTRSGVKD-----IPKVCPVCG 383

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            +              A  CT    C A+ ++    F SRDA NIEGL +  L+ F    
Sbjct: 384 GKTEIRQVSNA----KALYCTNP-ECQAKHVKAFALFASRDALNIEGLSEATLEKFIDR- 437

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+   DIF L + Q     +I+ + GFG+ S  NL  ++ K +  +L + I++LG
Sbjct: 438 ---GFIKEFTDIFHLDKWQ----EEIQTMEGFGEKSYKNLIANVEKAKVTTLPKVIYALG 490

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G   A+ + + +      + +++ +I    ++      +  VG+++A A V ++Q+
Sbjct: 491 IPGIGLANAKVICREF------SGDVDRMIHATAEELAE---IQGVGEVLAGAFVTYFQD 541

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677
            +++ +++ L+ E+       E            V TG+++    R + +E +  LG  V
Sbjct: 542 EKHVESLKRLIAELEIP-KEEESESQQIFAGVNFVITGSVEHFANRGEVKELIESLGGKV 600

Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  ++ KT+ +I  D  +  SK +KA +LGV I++EEQF+ ++++
Sbjct: 601 TGSVTSKTNYLINNDVTSTSSKNKKANELGVPIISEEQFIKMVEE 645


>gi|51598803|ref|YP_072991.1| NAD-dependent DNA ligase LigA [Borrelia garinii PBi]
 gi|81609923|sp|Q660X2|DNLJ_BORGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51573374|gb|AAU07399.1| DNA ligase [Borrelia garinii PBi]
          Length = 660

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 212/710 (29%), Positives = 351/710 (49%), Gaps = 64/710 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SI + ++E+  L++ I   D  YY  S P + D  YD    R   +    P+       
Sbjct: 1   MSI-KIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESRHPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++  +  +V HS+P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  IR I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIF 250
           YI+K +F  +N  +     KPY + RN ASGILRR++  ++    LN F++      E+ 
Sbjct: 169 YITKENFFKINKFL----EKPYTSSRNLASGILRRVDSREVANFPLNIFIYDFLNA-ELE 223

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQAN---TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            K     + K++ LGF V+  +R  +   +   +++Y  ++   R++  Y+IDG+V KV 
Sbjct: 224 LKTNDLAIAKLKKLGFKVDPLIRFFDQKSSIIEVLNYIADITKKRNSFEYEIDGVVLKVS 283

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           EF L+++LG  +  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA 
Sbjct: 284 EFVLREKLGYTSHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAF 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ITNATLHN+DYI  +            + VGD V V R G+VIP V  +I          
Sbjct: 344 ITNATLHNQDYIISI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKCSKGV 389

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C++ +V++         A   CT   +C +  +ER+K+F S++  +IEG  
Sbjct: 390 FKVPDNCPACKTVLVKE--------GAHFFCTNN-SCPSVAVERIKYFCSKNCMDIEGFS 440

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + + F F+ E     I    D++T    +           GF D  V NL +SI   + 
Sbjct: 441 DKTISFLFEKE----FISSEIDLYTFNFYKLL------KFKGFKDRKVYNLINSIEASKK 490

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               + + S+GI+ +G    R L   +L+  N   ++  +    N  + +L+++  +G+ 
Sbjct: 491 KPFSKLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRNFAFSTLLKIKGIGEK 547

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQR 663
           IA  I+E + +      +       +      E  +  +    +  KK   TGT     R
Sbjct: 548 IALNIIEAFNDSTM---LNKFKFFENLGFKMEESILIDDENRLLAGKKFCITGTFNGYSR 604

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
               + +   GA+    ++   D +IVG+  GSKLEKA  L VKIM+ E 
Sbjct: 605 SIIIDKLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFED 654


>gi|331002925|ref|ZP_08326438.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330413218|gb|EGG92592.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 650

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 191/710 (26%), Positives = 332/710 (46%), Gaps = 66/710 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++ +  L   ++     YY  +  I+ + EYD L     A+             N P 
Sbjct: 2   DKKQRIRELVDILNKAAKSYYVDAVEIMPNIEYDKLYDELLALEKE----TNVVLSNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G E+   L K  H  P LSL+K  ++ DL+ +++                    K+D
Sbjct: 58  QNVGYEIAGELPKKAHESPMLSLDKTKSVADLKSWLSDNKALL------------SWKMD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y  G+   A  RG+G  GE ++   +    IP  L +     + +RGE  I  
Sbjct: 106 GLTIVLTYRNGELAEAVTRGNGTIGEVITNNAKNFQNIP--LKIEFKGELILRGEAVIKY 163

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI-FAKG 253
           +DF  +ND +     K Y NPRN  SG +R+LNP     R +   +  + +  ++ F   
Sbjct: 164 SDFKRINDAIEDADAK-YKNPRNLCSGSVRQLNPAITKARMVYCNIFNVVRAEDMDFENS 222

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           + +  + ++  GF V     +      I S   E +S         DGLV  +D+ +L +
Sbjct: 223 KAKQFEWVKNEGFDVVEY--KITDSKNIESDIAEFESKIVDNDIPSDGLVLLLDDIALGE 280

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  ++ PR  ++ K+++++ +T+L  I+    RTG++ P+A  EPV + G  ++ A+L
Sbjct: 281 RLGSTSKFPRNAMAFKWSDERQNTKLKYIEWSPSRTGLINPIAVFEPVELEGTTVSRASL 340

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN    + L            + VGD + V +A  +IP+V +               P  
Sbjct: 341 HNVSIFEDLM-----------LGVGDEISVYKANMIIPQVYENFTKSNTE-----KIPDV 384

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S+       K         CT    C  + +++     SRDA NI+GL +  L+ 
Sbjct: 385 CPACGSQT----TVKKDNDSKVLLCTNP-DCQIKHIKQYALMASRDALNIDGLSESTLEK 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F         I+  +D+F L R +     +I N+ GFG  S   L  +I++ R+ ++ RF
Sbjct: 440 FLSK----GFIKSDSDLFNLSRYK----DEIINMEGFGKRSYEKLIAAIDEARHTNMARF 491

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++SLGI  +G+  A+ +A+Y+ +      +++ II  + DD L    +  +G+++A +IV
Sbjct: 492 LYSLGITGIGSANAKMIARYFDN------DLDRIINASKDDLLE---IEGIGEVLANSIV 542

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQ 672
           EF+ N +NI  +++L + +       E         K  V TGT++    R++ +E + +
Sbjct: 543 EFFGNEKNIENIKSLRELLI--FETEESETKDIFAGKVFVITGTVEHFSNRNELKEIIEK 600

Query: 673 LGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            G  VS  +S KT+ +I  D     SK +KA++LGV+I++EE FL LL++
Sbjct: 601 NGGKVSGSVSSKTNFLINNDTTSNSSKNKKAKELGVEIISEEDFLKLLEE 650


>gi|283797409|ref|ZP_06346562.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1]
 gi|291074764|gb|EFE12128.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1]
 gi|295090074|emb|CBK76181.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10]
          Length = 684

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 194/720 (26%), Positives = 332/720 (46%), Gaps = 73/720 (10%)

Query: 11  ALSIEQAR----KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            + IE+ +    + +  L   +      YYQ S+ ++ + EYD L      +      + 
Sbjct: 19  QMKIEEKQSGKLERMKELIGILREAGRAYYQESREVMSNFEYDRLYDELLELERETGTVF 78

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
                N P   +G E+  SL K  H  P LSL K  ++E+L++++               
Sbjct: 79  G----NSPTQNVGYEVVSSLPKERHESPMLSLNKTKSVEELKEWL------------GEQ 122

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              L  K+DG  I + YE+GK V A  RG+G  GE ++   +    +P  +       + 
Sbjct: 123 SGLLSWKMDGLTIVLTYEEGKLVKAVTRGNGEIGEVITNNAKTFVNVPMTI--PYKGQLV 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           +RGE  I  +DFL +N+E+  V  + Y NPRN  SG +R+LN      R + FF   L  
Sbjct: 181 LRGEAVIRYSDFLKINEEIEDVDAR-YKNPRNLCSGSVRQLNSEVTAQRKVRFFAFSLVS 239

Query: 246 TSEIFAK-GQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              +  K  + E    ++  GF         A+T    V+ ++E            DGLV
Sbjct: 240 ADGVDFKNSREEQFLWLKSQGFETVEYRLVTADTLEAAVASFSEAVEK---NDVPSDGLV 296

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
              D+ +  + LG  A+ PR  I+ K+A++   T L  I+    RTG++ PVA  EPV +
Sbjct: 297 LLFDDIAYGQSLGRTAKFPRDSIAFKWADEIQETTLSYIEWSASRTGLINPVAVFEPVEL 356

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A++HN   ++ L+           +  GDR+ V +A  +IP++ D +      
Sbjct: 357 EGTTVSRASVHNISIMEALE-----------LGEGDRITVYKANMIIPQIADNLTR---- 401

Query: 424 DAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            +     P  CP+C  +  VR +N      V +  CT    C A++++    F SRDA N
Sbjct: 402 -SGVRDIPETCPVCGGKTEVRKVND-----VKSLYCTNP-DCQAKKIKSFTLFTSRDALN 454

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I GL +  L+ F         I   ADIF L R +     +I N+ GFG  S   L +++
Sbjct: 455 IGGLSEATLEKFIAR----GFIHEYADIFHLDRHE----EEIVNMEGFGKKSFDKLTEAV 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            +  + +L R ++ LG+  +G   A+ L +++           +  A        L  V 
Sbjct: 507 KRAADTTLPRVVYGLGVAGIGLANAKMLCRHFQ---------YDFHAMRCAGKEELTAVD 557

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI 661
            +G+++A A ++F+ + +N   V+ L++E++      E+   +E+ E    V TG+++  
Sbjct: 558 GIGEVLADAWIQFFADEKNNQMVDRLMEELTIEAAPKEEGERTELFEGLVFVITGSVEHF 617

Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLL 718
           + R + QE +   G  V+  ++ KT  +I  D     SK +KA++LG+ ++ EEQF+ +L
Sbjct: 618 KNRKEVQEIIESRGGKVTGSVTAKTSYLINNDAASNSSKNKKARELGIPVITEEQFIEML 677


>gi|294155884|ref|YP_003560268.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145]
 gi|291600422|gb|ADE19918.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145]
          Length = 657

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 191/706 (27%), Positives = 340/706 (48%), Gaps = 53/706 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++   +   L  +I  +++ YY   +P + D+EYDAL +    I    P +      + P
Sbjct: 3   QKVIDKYQELIAKIKQYNNEYYNLDQPSVSDAEYDALYKELLEIEKQNPKIINQ---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              IGG  +    K TH    LSL+K  + +++ KF   I++  +  +     F LEPK+
Sbjct: 60  SQIIGGFASSKFSKYTHQKLMLSLDKATHFDEITKFYNDIFKVIKTDNKG---FFLEPKV 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++ YE G    A  RGDG  GEDVS  +  I  +   ++   P  IE+RGE+Y+S
Sbjct: 117 DGLSISLHYENGILQRAVTRGDGLVGEDVSENVLQIKEVKHKIAYKKP--IEIRGEIYLS 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
           K +F  LN ++   G K +ANPRNAASG LR+L+   +  R L   ++ L          
Sbjct: 175 KENFNKLNKKIEDQGLKSFANPRNAASGTLRQLDKNIVRERNLGIVLYELVDPLVHKITS 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + +  +  LGFP     +       I++Y  E   I++ L YD DGLV K ++    K
Sbjct: 235 QDQSISFINQLGFPTQKNNKLLYELDDILNYIEEFGEIKNNLDYDCDGLVIKYNDIEQWK 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  ++ P++ I++K+  ++A TR+  I I  GRTG +  +A +EPV +  ++++ ATL
Sbjct: 295 LLGFTSKFPKYAIAYKYQVEEAITRINKISISTGRTGKINYLAHVEPVELNQSIVSKATL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN +YI+ L+           + +GD V++ +AGE+IPKV ++   ++      F     
Sbjct: 355 HNYNYIEELN-----------LNIGDDVVIIKAGEIIPKVREL---KQKKSIGVFPKLIN 400

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           C  C+S++    +           C     C  + +  L +F S+   +I+G+G + +  
Sbjct: 401 CLSCKSKLEYIDDNLE------QYCLNK-NCQEKIINSLIYFASKPCLDIKGMGDKVVKI 453

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            +++      +    D F L  ++     K+  +  F +  V NL ++I   +   L + 
Sbjct: 454 LYEN----GLVLEIKDFFELHNKR----DKMLQLPSFKEKKVDNLINAIETIKKAQLHKV 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I +LG++++G   ++ ++            IN +      +   L  +  +G     +I 
Sbjct: 506 IIALGMKNIGTRSSKLISTK----------INKLSDLLTYNIDELENIDDIGPKSIASIK 555

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           EF    +N   +  L       I  ++ ++ +++ N     TGTL K  R    + + + 
Sbjct: 556 EFLSEDKNKELITFLDNYF---IQVNDSSIGNKLVNLSFSITGTLLKP-RDYFVDLIEKN 611

Query: 674 GAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLL 718
           G     + + KT+ +IVG+NPGS K+ KA+ LG +++  ++F  ++
Sbjct: 612 GGQFHKLPTSKTNYLIVGENPGSAKINKAKILGTQVITIDEFEKMI 657


>gi|219685109|ref|ZP_03539929.1| DNA ligase, NAD-dependent [Borrelia garinii Far04]
 gi|219673205|gb|EED30224.1| DNA ligase, NAD-dependent [Borrelia garinii Far04]
          Length = 660

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 209/716 (29%), Positives = 354/716 (49%), Gaps = 64/716 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SI + ++E+ +L++ I   D  YY  S P + D  YD    R   +    P+       
Sbjct: 1   MSI-KIQQEIENLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESKHPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++  +  +V HS+P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  IR I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIF 250
           YI+K +F  +N  +     KPY + RN ASG+LRR++  ++    LN F++      E+ 
Sbjct: 169 YITKENFFKINKFL----EKPYTSSRNLASGMLRRVDSREVANFPLNIFIYDFLNA-ELD 223

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQAN---TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            K     + K++ LGF ++  +R  +   +   +++Y  ++   R++  Y+IDG+V KV 
Sbjct: 224 FKTNDLAIAKLKKLGFKIDPLIRFFDQKSSIKEVLNYIADITKQRNSFEYEIDGVVLKVS 283

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F L+++LG     P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA 
Sbjct: 284 DFVLREKLGYTLHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAF 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ITNATLHN+DYI  +            + VGD V V R G+VIP V  +I          
Sbjct: 344 ITNATLHNQDYIISI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKCSKGV 389

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C++ +V++         A   CT   +C +  +ER+K+F S++  +IEG  
Sbjct: 390 FKFPDNCPACKTVLVKE--------GAHFFCTNN-SCPSVTVERIKYFCSKNCMDIEGFS 440

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + + F F+ +     I    D++T    +           GF D  V NL +SI   + 
Sbjct: 441 DKTISFLFEKK----FISSEIDLYTFNFYKLL------KFKGFKDRKVYNLINSIEASKR 490

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               + + S+GI+ +G    R L   +L+  N   ++  +    +  + +L+++  +G+ 
Sbjct: 491 KPFSKLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRDFAFSTLLKIKGIGEK 547

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQR 663
           IA  I+E + +      +       +      E  +  +    +  KK   TGT +   R
Sbjct: 548 IALNIIEAFNDSTM---LNKFKFFENLGFKMEESILIDDDNRLLAGKKFCITGTFKDYSR 604

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               + +   GA+    ++   D +IVG+  GSKLEKA  L VKIM+ E     L 
Sbjct: 605 PIIIDKLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFEDIKSYLD 660


>gi|331270899|ref|YP_004385610.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925]
 gi|329127291|gb|AEB77235.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925]
          Length = 649

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 186/711 (26%), Positives = 335/711 (47%), Gaps = 67/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   + +  L +E++   D YY   + ++ D E+D    +   +      +      N 
Sbjct: 1   MEDKTQRVKELIKELNQASDKYYNSDETVMTDKEWDDKFDKLKQLEQDTGIILS----NS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G E+   L KV H+IP  SL K  +I DL KFI             S    +  K
Sbjct: 57  PTQKVGYEVKSKLDKVVHNIPLKSLGKTKSIGDLNKFI------------GSNEVIIMDK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG    + YE G+ +  + RG+G  GED++  ++    IP  L ++    +++ GE  I
Sbjct: 105 GDGLTCELIYENGQLLQGSTRGNGEIGEDITHNVKTFKNIP--LQIDFKGYLKLSGESVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
              DF  +N ++    +  Y+N RN  +G +R+L+      R + F+   L +   +   
Sbjct: 163 LDEDFELINSKLDDEDK--YSNSRNLVAGSVRQLDSNICDKRNVKFYAFSLLECEGVDFI 220

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            + E L+ +  LGF     ++  N    +    ++M+       + IDGLV+  +     
Sbjct: 221 TKEEQLEFLSRLGFETIEYIK-YNNSEDLEQVISKMQKSAYEKGFPIDGLVFAYNNIEYA 279

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG+    P   I++KF +++  T+ +  + Q+ RTG++ PVAR +PV I G+++  AT
Sbjct: 280 NLLGDTLHHPLHSIAYKFYDEEYETQYITTEWQVSRTGMINPVARFKPVEIEGSVVERAT 339

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DY + L            +  GD + V +A +VIPKV+          +     P+
Sbjct: 340 LHNLDYFEDL-----------KLGQGDTIKVIKANQVIPKVM-----SNDTMSNTEIIPT 383

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +    L      L+          CSA+ + R+ H+ SR+A NI+GL ++ ++
Sbjct: 384 ECPVCGGKTEEKLLKTARVLI-----CNNPECSAKHISRITHYCSRNAMNIDGLSEKTIE 438

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         ++   DI+ L++ +     +I NI G G  S  N+ ++I K +   LE 
Sbjct: 439 KFVN----LGYLKDIDDIYKLEQYK----EEIINIDGLGTKSYNNMIEAIEKSKYCKLEN 490

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LG+ +VG   A+ L K + S               N +   +  +  +GD++   I
Sbjct: 491 FIFALGVPNVGLGTAKLLVKQFKSIDKIM----------NCNLTEIYGIEGIGDVVGSEI 540

Query: 613 VEFY-QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
             ++  N  +I  V  LLK +       +++ S+++E K  V TG +   + R++ +  +
Sbjct: 541 YNYFIINTDSINLVNKLLKFI--DFEEVKESSSNKLEGKTFVITGDVHVFKNRNEVKAKI 598

Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++G  V+  +S+KTD +I    ++  SK +KA+ L + I+ EE+F+ +++
Sbjct: 599 EEMGGKVTGSVSKKTDYLINNDVESTSSKNQKAKDLNIPIITEEEFVEMIK 649


>gi|154502352|ref|ZP_02039412.1| hypothetical protein RUMGNA_00165 [Ruminococcus gnavus ATCC 29149]
 gi|153796977|gb|EDN79397.1| hypothetical protein RUMGNA_00165 [Ruminococcus gnavus ATCC 29149]
          Length = 655

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 187/712 (26%), Positives = 324/712 (45%), Gaps = 67/712 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +K +  L + ++     Y Q    I+ + EYD L    + +         +   + 
Sbjct: 1   MEAKKKRMQELVELLNRARRAYEQEDTEIMSNYEYDRLYDELEGLERE----LGTTLASS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K  ++E L+ F+                  +  K
Sbjct: 57  PTVNVGYEVLSELPKERHEKPMLSLDKTKDVEQLKSFL------------GEQKAVISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y+ G+   A  RG+G  GE ++   +    +P  L +     + +RGE  I
Sbjct: 105 MDGLTIVLTYQNGRLQKAVTRGNGEVGEVITNNAKVFRNLP--LQIPYQGELILRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE-IFA 251
              DF  +N+++  V  + Y NPRN  SG +R+LN     R  + FF   L K     F 
Sbjct: 163 GYKDFERINEQIEDVDAR-YKNPRNLCSGSVRQLNNEITARRNVKFFAFTLVKADGAEFE 221

Query: 252 KGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             + + L  +   GF V         +    V++++E         +  DGLV   D+ +
Sbjct: 222 NSRMQQLSWLEKQGFEVVEHHLADRASIEEEVAWFSEQIVH---NDFPSDGLVLVYDDIA 278

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             + LG  A+ PR   + K+A++   T LL+I+    RTG++ PVA  EPV + G  ++ 
Sbjct: 279 YGQSLGTTAKFPRDSYAFKWADEIRETTLLEIEWSPSRTGLINPVAIFEPVELEGTTVSR 338

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN   ++ L+           + VGD + V +A  +IP++ + +      D      
Sbjct: 339 ASVHNISIMEDLE-----------LGVGDVIQVYKANMIIPQIAENLTRSGVKD-----I 382

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C       +  +T        CT    C A+ L+    FVSRDA NIEGL +  
Sbjct: 383 PQVCPVCGGATKIKMENET----KTLYCTNP-ECQAKHLKSFALFVSRDAMNIEGLSEAT 437

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+ F         IR   DI+ L R ++T    I+ + GFG+ S   L  S+   R+ ++
Sbjct: 438 LEKFIGE----GFIRDFTDIYHLDRYEET----IKTLEGFGEKSYAKLITSVENSRSTTM 489

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + I+SLGI ++G   A+ + + + +      +              L+ +  VG++IA+
Sbjct: 490 PKVIYSLGIANIGLSNAKMICRAFDNDPQRMMQ---------ATVEELVDIQGVGEVIAR 540

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEY 669
             V+++ +  +    + LL+EV       E++     EN   V TG+++    R + +E 
Sbjct: 541 TFVDYFSDETHRDLFKRLLQEVKLQKEEGEESAQ-IFENMNFVITGSVEHFANRREVKEI 599

Query: 670 VTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +   G  V+  ++ KT+ +I  D  +  SK +KA++L V I++E QFL +L+
Sbjct: 600 IESRGGKVTGSVTGKTNYLINNDVQSASSKNKKAKELNVPIISESQFLEMLE 651


>gi|182413875|ref|YP_001818941.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
 gi|254778152|sp|B1ZMR3|DNLJ2_OPITP RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|177841089|gb|ACB75341.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
          Length = 708

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/704 (30%), Positives = 334/704 (47%), Gaps = 47/704 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L  L  EI+ HDD Y++ ++P I D++YDALK+    +   F      +     L  +
Sbjct: 45  RRLELLRVEIARHDDLYFRKAQPEISDADYDALKQELRELESRFGRRVPRDP--AALRDM 102

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      K  H +  LSLEK      +R F   + R  +      I + +EPK DG  
Sbjct: 103 GDDRVSGFPKARHRMRMLSLEKTTTESGVRAFDQALRRLVK--PPAEIAYVVEPKFDGLA 160

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197
           I+  YE+G+ V    RG+G  G+DV+A    I T+P  L     P ++EVRGEV+++  +
Sbjct: 161 ISATYEEGRLVRLVTRGNGEEGDDVTAAAGRIRTLPPRLAGAAWPRVVEVRGEVFLTFAE 220

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF-AKGQY 255
           F  +N      GR  +++PRN A G L+ L P D   R L+    GLG          Q 
Sbjct: 221 FERINRGRRENGRPTFSSPRNLAVGTLKSLEPEDREVRQLDVVFFGLGAIDGHAAPASQT 280

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L+ +   G P     R+ ++         E+   RS L + IDG V K+D+   Q   
Sbjct: 281 QLLEWIAQWGLPSVEDARRVDSIDDAWRAVQELGGRRSHLAFPIDGAVIKLDDAVGQTAA 340

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G    +PRW I+ K+A  +  TR+  + +Q+GRTG++TPVA LEPV + GA IT ATLHN
Sbjct: 341 GVSEVAPRWAIAFKYAPARVGTRVRGVALQVGRTGVITPVAELEPVALAGARITRATLHN 400

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              ++             D+RVGD V ++R GE+IP VV +   +R   + PF FP  CP
Sbjct: 401 ASEMER-----------SDLRVGDFVWIERMGEIIPAVVAVDTAQRGTVSAPFVFPRDCP 449

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR L+       A  RCT    C A+Q+ +++H+VS +   I GLG   ++   
Sbjct: 450 GCGALLVRALD------DANWRCTND-DCPARQVRKVEHYVSDEGVGIRGLGAASVEALV 502

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +S+     +R   D++TL   + T+ T++             + D+I + R   L R I 
Sbjct: 503 RSQR----VREIPDLYTLTAAEVTAHTRLSA------AQAARVVDAIQRSRKAPLRRVIA 552

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LG+  +G   A +L   +     FA    + +           +V  +     +A+   
Sbjct: 553 GLGLPGIGPAGANALGARFADLPQFAAARESDLQ----------QVEGLRPESVRALATA 602

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
               R    +  L         +     +  +  K++VFTGTL  + R +A E V + G 
Sbjct: 603 LSAERTQQLLARLAAAGV--GAQSATADAGTLAGKEVVFTGTLPTLSRRRATELVEEAGG 660

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V+  ++  T  ++ G NP SKL +A  LGV ++ E + L L +
Sbjct: 661 RVADRVTAATWRLVAGRNPASKLHQATALGVPVIEEAELLRLAE 704


>gi|4235374|gb|AAD13190.1| NAD-dependent DNA ligase [Thermus thermophilus]
          Length = 557

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 191/605 (31%), Positives = 310/605 (51%), Gaps = 54/605 (8%)

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
            FP+L   + P+ P  ++G     +    V H     SL+  +N ++L+ F  RI R   
Sbjct: 1   RFPEL---KSPDSPTEQVGARPLEATFRPVRHPTRMYSLDNAFNFDELKAFEERIERALG 57

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
           +  +    +T+E K+DG  + + YE G  VY A RGDG  GE+V+  +  IPTIPR L  
Sbjct: 58  R--EGPFAYTVEHKVDGLSVNLYYEDGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLK- 114

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
            +PE +EVRGEVY+    FL LN+E+   G + + NPRNAA+G LR+ +P     R L  
Sbjct: 115 GVPERLEVRGEVYMPVEAFLRLNEELEERGARIFKNPRNAAAGSLRQKDPRITAKRGLRA 174

Query: 239 FVHGLG----KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
             + LG    +        Q+ +L  ++   FPV +G  +A    G+ + Y +    R  
Sbjct: 175 TFYALGLGLEEVEREGVATQFALLHWLKEKSFPVEHGYARAVGAEGVEAVYQDWLKKRRA 234

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LP++ DG+V K+DE +L ++LG  AR+PR+ I++KF  ++  TRLLD+  Q+GRTG +TP
Sbjct: 235 LPFEADGVVVKLDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVAFQVGRTGRVTP 294

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           V  LEPV + G+ ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+
Sbjct: 295 VGILEPVFLEGSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVL 343

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            ++   R  + +P  +P  CP C  R++++           HRC   L C A++ E ++H
Sbjct: 344 RVLKERRTGEERPIRWPETCPECGHRLLKE--------GKVHRCPNPL-CPAKRFEAIRH 394

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F SR A +I+GLG++ ++   +       ++  AD++ L++       ++      G+ S
Sbjct: 395 FPSRKAMDIQGLGEKLIERLLEK----GLVKDVADLYRLRKEDLVGLERM------GEKS 444

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL   I + +   LER +++LG+  VG  +AR+LA  + +     +     +    + 
Sbjct: 445 AQNLLRQIEESKRRGLERLLYALGLPGVGEVLARNLAARFGNMDRLLEASLEELLEVEEV 504

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
                       + A+AI+E  ++P     V  L +       + +      ++    V 
Sbjct: 505 GE----------LTARAILETLKDPAFRDLVRRLKEAGVEMEAKEK--GGEALKGLTFVI 552

Query: 655 TGTLQ 659
           TG L 
Sbjct: 553 TGELS 557


>gi|148377548|ref|YP_001256424.1| DNA ligase [Mycoplasma agalactiae PG2]
 gi|254781374|sp|A5IY71|DNLJ_MYCAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148291594|emb|CAL58980.1| DNA ligase [Mycoplasma agalactiae PG2]
          Length = 654

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 214/710 (30%), Positives = 358/710 (50%), Gaps = 57/710 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+A++ + SL ++I+  +  YYQ +KP + D EYD      + +    PDL  S   
Sbjct: 1   MQKEEAKELIKSLVEKINQWNYEYYQLNKPSVSDLEYDKALLELEKLEKEHPDLILS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  +IG   +    K  +  P LSL K +N +D+  FI  I +        +I F +E
Sbjct: 58  NSPTFRIGSFASEKFTKFVYQKPMLSLAKAYNYDDINSFINNISKIVPT---ENINFNIE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I +RY++GK V AA RGDG  GEDV+  I  I +IP+++  N    +EVRGEV
Sbjct: 115 PKIDGLSIALRYKQGKLVKAATRGDGSEGEDVTENIYQIKSIPKLI--NYFNDLEVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           +I+KNDF  +N+       +  A      SG LR+L+   +  R L+ F++ + +  +  
Sbjct: 173 FITKNDFKKINESNNFANARNAA------SGTLRQLDANIVAERNLSAFLYEIVEPEKHG 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q+E L+ M+ L FP N   +         S  ++   I++ L YD DGLV K+++  
Sbjct: 227 IYYQHEALEFMKNLDFPTNPFSKVVEIEELEESI-SDFAEIKNKLDYDADGLVIKLNDLQ 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +  +LG+ ++ P+  I+ K+  + AS+R+ DI   +GRTG +T +A + PV +    +  
Sbjct: 286 MWDKLGKTSKFPKHSIAFKYDVEVASSRITDILTSVGRTGKITYIANILPVLLNQTTVKA 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN ++IK ++           I + D V + +AGE+IPKV+ +   + + D   +  
Sbjct: 346 ATLHNHNFIKDMN-----------ININDEVNIIKAGEIIPKVISLKEEKNYVD--YYKK 392

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C S++V        + +    CT    C  + +  + HF SR+  NI GLG   
Sbjct: 393 ATNCPSCGSQLV------EFEGIVDQFCTND-ECPDKNINNIYHFASRNCLNIVGLGLST 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F+        I+   DIF L + +     ++  +  + D+ V N+ +SI   +N   
Sbjct: 446 VKDFYPK-----FIKNIKDIFDLHKYR----AELIKLPRYRDLKVDNILNSIESAKNKKF 496

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + IF+LGI+H+G   A+ +A  Y ++     + N          L L     +G  I +
Sbjct: 497 SKVIFALGIKHIGQRAAKLIADNYANFAELLDDHN---------LLKLQNTKNIGPKIIE 547

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +++EF  +P N   +     +   +     K +S+ +     V TG L + + H  +  +
Sbjct: 548 SLIEFISSPANQDLL--AFLDAIFNYEGKAKVISTILSGYTFVITGVLSEPRSHFVK-LI 604

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +    VS+ +S KT  ++ G + GSKLEKA + G K++NEEQF  L++Q
Sbjct: 605 EEHSGNVSSAISSKTSYLLAGSDAGSKLEKAYKTGTKVINEEQFYDLIKQ 654


>gi|269103205|ref|ZP_06155902.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163103|gb|EEZ41599.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 495

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 195/532 (36%), Positives = 305/532 (57%), Gaps = 41/532 (7%)

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + K  F  LN   +  G K +ANPRNAA+G LR+L+     TR L+F+ + +G       
Sbjct: 1   MPKKGFEQLNQRALKKGEKTFANPRNAAAGSLRQLDSKVTATRPLSFYAYAVGIVEGREL 60

Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           +  QY+ L +++  GFP++  +R+ ++   ++ Y+  +   R +L YDIDG+V KVD+  
Sbjct: 61  EGSQYDRLCQLKSWGFPMSPEIRRVDSIEEVIRYHQMIGEKRESLEYDIDGVVIKVDKVD 120

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q QLG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 121 TQLQLGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSN 180

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            + VGD V+++RAG+VIP++V ++ + R  DA P  F
Sbjct: 181 ATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVSVVESRRPADASPVIF 229

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS+V R          A  RCTGGL C AQ+ E LKHFVSR A +++G G++ 
Sbjct: 230 PTECPVCQSKVERIEGE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKV 283

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L     T+  ++      G  S   L D++   +  +L
Sbjct: 284 IEQLVDREM----VTTPADLFRLSAGVVTALDRM------GPKSAQKLVDALGNAKETTL 333

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI+SLGIR VG   A +LA Y+ + +       +           LI VP VG+I+A 
Sbjct: 334 SRFIYSLGIREVGEATAANLAHYFETLEALMTASKD----------QLIEVPDVGEIVAA 383

Query: 611 AIVEFYQNPRNICAVE--ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            I  F++   N+  V     +    P I +   +V    E K +V TG+L ++ R +A+E
Sbjct: 384 HIFNFFREEHNLAVVNDLRDVGIHWPDIEKVADDVELPFEGKTVVLTGSLSQLSRTEAKE 443

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +LGA V+  +S+KTD+++ G+  GSKL KAQ+LG+++ +E+Q +  +Q+
Sbjct: 444 ALQKLGAKVTGSVSKKTDLVVAGEAAGSKLTKAQELGIEVWDEQQLIDFMQR 495


>gi|224534829|ref|ZP_03675401.1| DNA ligase, NAD-dependent [Borrelia spielmanii A14S]
 gi|224514077|gb|EEF84399.1| DNA ligase, NAD-dependent [Borrelia spielmanii A14S]
          Length = 660

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 203/712 (28%), Positives = 346/712 (48%), Gaps = 63/712 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++E+++L++ I   D  YY  S P + D  YD    R   +   +P+       + P 
Sbjct: 4   KIQQEIANLKKLIRKWDKEYYVDSLPSVEDFVYDEHILRLQELESKYPEYKTL---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K G ++  +  +V HSIP LSL+K++++  L+ +I +I        +NS   ++EPKID
Sbjct: 61  LKFGSDLLNTFKEVEHSIPILSLDKVYDLNLLKSWIDKI------DFNNSFNISVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y+ G    A  RG+G  G DV+  IR I  IP  L   +   + +RGEVYI+K
Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPFFLDEKV--DLVLRGEVYITK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKGQ 254
            +F  +N  +     KPY N RN ASGILRR++  ++    LN F++       +  K  
Sbjct: 173 ENFFKINKFL----EKPYTNSRNLASGILRRVDSKEVANFPLNVFIYDFLNA-GLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVRQAN---TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               +K++ LGF VN  +R  +   +   +++Y  ++   R++  Y+IDG+V KV +F+L
Sbjct: 228 NLATEKLKKLGFQVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG     P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA ITNA
Sbjct: 288 RERLGYTLHHPKWAMAYKFESLSGLSRVNSIIVQVGRSGKITPVANIDKVFVSGAFITNA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  ++           + VGD V V R G+VIP V  +I          F   
Sbjct: 348 TLHNQDYIMSIN-----------LNVGDIVKVSRRGDVIPAVEMVI---NKFSTGFFKIL 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C+  +V++         A   CT    C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKMALVKE--------GAHFFCTNN-NCPSVVVERIKYFCSKNCMDIEGFSDKTI 444

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            F F+ +     I    D++     +           GF +  V NL +SI   +     
Sbjct: 445 SFLFEKK----FISSEIDLYIFDFYKLL------KFKGFKERKVNNLINSIEASKKKPFS 494

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + S+GI+ +G    R L   +L+  N   ++  +    +  + +L+++  +G+ IA  
Sbjct: 495 KLLLSIGIKELGENTIRLL---FLNNFNSFSKLFKLCQDRDFAFSTLLKIKGIGEKIALN 551

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I+  + +      +       +      E     + +  +  KK   TG+     R    
Sbjct: 552 IIGAFNDSIM---INKFKFFENLGFKMEECVLIDDKNKLLLGKKFCITGSFGDYSRSIVI 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+    ++R  D +IVG   G+KL+KA  L +KIM+ E     L 
Sbjct: 609 DKLENKGAIFQTCVTRSLDFLIVGKKAGTKLKKALNLNIKIMSFEDIKSYLD 660


>gi|326792059|ref|YP_004309880.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427]
 gi|326542823|gb|ADZ84682.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427]
          Length = 649

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 188/709 (26%), Positives = 329/709 (46%), Gaps = 66/709 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A + +  L   +      Y Q  + ++ + EYD        +      +          
Sbjct: 2   KAVERMKELVDVLGKAAYAYEQEDREVMSNYEYDKFYDELKRLEEETGIILAG----SVT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G E+  SL K+TH    LSL+K   +  L+ F+             +    L  K+D
Sbjct: 58  QKVGYEIASSLPKITHPKRMLSLDKTKEVSKLKAFL------------GNQEGLLSWKLD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I   YE+G+ V A  RG+G  GE+++   +    +P  L+++  E + +RGE  I+ 
Sbjct: 106 GLTIVCIYEEGQLVSAVTRGNGSVGEEITNNAKTFKELP--LAIDYKERVVLRGEAIITY 163

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
           +DF  +N+ +     K Y NPRN  SG +R+LNP     R +  +   L +        +
Sbjct: 164 SDFERINEGLGEKEEK-YKNPRNLCSGSVRQLNPQITAGRNVRLYAFTLVEG-GPDVATK 221

Query: 255 YEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            E L+ ++  GF V       AN     V+Y+ E      + P+  DGLV   ++     
Sbjct: 222 AEQLEWLKARGFKVVEYKHVTANNIEETVAYFAEAIK---SQPFASDGLVLTYNDREYSA 278

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LGE A+ P+  I+ K+ ++   T+LL+++    RTG++ PVA  EPV I G  +  A++
Sbjct: 279 SLGETAKFPKDAIAFKWQDEIVETKLLEMEWNTSRTGLINPVAIFEPVEIEGTTVERASV 338

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   ++ L            + +GD + V +A  +IP++ + +       +     P  
Sbjct: 339 HNLSILEEL-----------KLGIGDTIKVYKANMIIPQIAENLTQ-----SANVEIPEV 382

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C +  +     +   L+    C     C AQ+L  L HF +RDA NIEGL +  ++ 
Sbjct: 383 CPVCGAHTMIMKEKEAKTLI----CPNS-NCKAQRLRALAHFTTRDAMNIEGLSEATIEK 437

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       ++    ++ L R +     ++  + G G  S   L  SINK R+++L  F
Sbjct: 438 LLEK----GYLKDFTSLYHLDRYE----AEVIEMEGLGKKSFDKLIKSINKSRDVALANF 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGI  VG   A+ + K++ +      E++ ++      +  LI +  VG +IA+   
Sbjct: 490 VYALGIAQVGLGTAKLICKHFNN------ELDEMMKAR---YEQLITIDGVGPVIAKEFE 540

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQ 672
           E++    N   +E L+KE+   +     +  S I NK  V TG +   + R + Q  +  
Sbjct: 541 EYFNLEENKAMLETLVKEIHFKLENVTISQESPILNKTFVITGDVNYFKNRKELQAKIET 600

Query: 673 LGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LG  V+  +S+ TD +I  D+    SK +KA++LG+ I+ E QFL +++
Sbjct: 601 LGGKVTGSVSKNTDYLINNDSESNSSKNKKAKELGIPILTEAQFLEIIE 649


>gi|313678467|ref|YP_004056207.1| DNA ligase (NAD+) [Mycoplasma bovis PG45]
 gi|312950136|gb|ADR24731.1| DNA ligase (NAD+) [Mycoplasma bovis PG45]
          Length = 654

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 202/709 (28%), Positives = 354/709 (49%), Gaps = 57/709 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A++ + SL  +I+  +  YYQ +KP + D EYD      + +   +P+       
Sbjct: 1   MESKNAKELIKSLVDKINQWNYEYYQLNKPSVSDLEYDKALWELEKLEKEYPEFVLD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+G   +    K  H  P LSL K ++ +D++ FI  I +         I F +E
Sbjct: 58  DSPTFKLGSFASEKFTKFIHKKPMLSLAKAYSYDDIKSFINNISKIVPA---ERINFNIE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  I + Y+KGK V A  RGDG  GEDV+  I  I +IP+++  N    +EVRGEV
Sbjct: 115 PKVDGLSIALHYKKGKLVKAVTRGDGTEGEDVTENIYQIKSIPKLI--NYLNDLEVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           +ISK++F  +N+       +  A      SG LR+L+ T +  R L+ F++ + +     
Sbjct: 173 FISKDNFKKINESNNFANARNAA------SGTLRQLDSTIVAKRNLSAFLYEVVEPEMHN 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E L+ M+ L  P N   +       +    ++   I++ L YD DGLV K+++  
Sbjct: 227 INYQNEALEFMKKLNIPTNPFSKVVE-IEELEEAISDFAEIKNKLDYDSDGLVIKLNDLQ 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           + ++LG+ ++ P+  I+ K+  + AS+ ++DI   +GRTG +T +A + PV +    +  
Sbjct: 286 MWEKLGKTSKFPKHSIAFKYDVEVASSTIVDILTSVGRTGKITYIANIHPVILNQTSVRA 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN ++IK ++           I + D V + +AGE+IPKV+ +  ++ + D   +  
Sbjct: 346 ATLHNHNFIKDMN-----------ININDEVNIIKAGEIIPKVISLKNSKNYVD--YYKK 392

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C S ++        + +    CT    C  + +  + HF SR+  NI GLG   
Sbjct: 393 ATNCPSCNSELI------EFEGIVDQFCTND-ECPEKNVNNIYHFASRNCMNIVGLGLST 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F+        I+   DIF+L + +    +++  +  +G+  V N+ +SI   +N + 
Sbjct: 446 VKDFYPK-----FIKKIKDIFSLYKYK----SELILLPRYGEQKVDNILNSIESVKNKAF 496

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + +F+LGI+H+G   A+ ++  Y+++     +              L     +G  I +
Sbjct: 497 SKVLFALGIKHIGQRAAKLISDNYVNFAEILNDSE---------LSKLKSTKNIGPKIIE 547

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ E+  NP N   +  +  +   +     K +S+       V TGTL + + H  +  +
Sbjct: 548 SLTEYINNPLNKDLL--IYLDSIFNYEGKTKAISNIFSGYSFVITGTLSEPRSHFVK-II 604

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +    VSA +S +T  ++ G   GSKLEKA +LGVK++NEEQF  LL+
Sbjct: 605 EENSGSVSASVSGRTSYVLAGSEAGSKLEKAYKLGVKVINEEQFYKLLE 653


>gi|219684330|ref|ZP_03539274.1| DNA ligase, NAD-dependent [Borrelia garinii PBr]
 gi|219672319|gb|EED29372.1| DNA ligase, NAD-dependent [Borrelia garinii PBr]
          Length = 660

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 207/716 (28%), Positives = 353/716 (49%), Gaps = 64/716 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SI + ++E+  L++ I   D  YY  S P + D  YD    R   +    P+       
Sbjct: 1   MSI-KIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESTHPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++  +  +V HS+P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  IR I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           YI+K +F  +N  +     KPY + RN ASG+LRR++  ++    LN F++      E+ 
Sbjct: 169 YITKENFFKINKFL----EKPYTSSRNLASGMLRRVDSREVASFPLNIFIYDFLNA-ELE 223

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQAN---TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            K     + K++ LGF ++  +R  +   +   +++Y  ++   R++  Y+IDG+V KV 
Sbjct: 224 FKTNDLAIAKLKKLGFKIDPLIRFFDQKSSIKEVLNYIADITKQRNSFEYEIDGVVLKVS 283

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F L+++LG     P+W +++KF      +++  I +Q+GR+G +TPVA ++ V + GA 
Sbjct: 284 DFVLREKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAF 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ITNATLHN+DYI  +            + VGD V V R G+VIP V  +I          
Sbjct: 344 ITNATLHNQDYIISI-----------GLNVGDVVKVSRRGDVIPAVEMVI---NKCSKGV 389

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C++ +V++         A   CT   +C +  +ER+K+F S++  +I+G  
Sbjct: 390 FKFPDNCPACKTVLVKE--------GAHFFCTNN-SCPSVTVERIKYFCSKNCMDIKGFS 440

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + + F F+ +     I    D++T    +           GF D  V NL +SI   + 
Sbjct: 441 DKIISFLFEKK----FISSEIDLYTFNFYKLL------KFKGFKDRKVYNLINSIEASKR 490

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               + + S+GI+ +G    R L   +L+  N   ++  +    +  + +L+++  +G+ 
Sbjct: 491 KPFSKLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRDFAFSTLLKIKGIGEK 547

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQR 663
           IA  I+E + +      +       +      E  +  +    +  KK   TGT +   R
Sbjct: 548 IALNIIEAFNDSTM---LNKFKFFENLGFKMEESILIDDDNRLLAGKKFCITGTFKGYSR 604

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               + +   GA+    ++   D +IVG+  GSKLEKA  L VKIM+ E     L 
Sbjct: 605 PIIIDKLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFEDIKSYLD 660


>gi|315652468|ref|ZP_07905453.1| DNA ligase [Eubacterium saburreum DSM 3986]
 gi|315485257|gb|EFU75654.1| DNA ligase [Eubacterium saburreum DSM 3986]
          Length = 649

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 193/711 (27%), Positives = 334/711 (46%), Gaps = 70/711 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             RK +  L + ++     YY  +  I+ + EYD L     ++             N P 
Sbjct: 2   DKRKRIKELVEILNKAAKSYYVDAVEIMPNIEYDKLYDELVSLEKE----TNVVLSNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G E    L K  H  P LSL+K  ++ +L  ++                     K+D
Sbjct: 58  QNVGYETASELPKKAHESPMLSLDKTKSVAELEDWLGDNKALL------------SWKMD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y  G+ V A  RG+G  GE ++   +    +P  L +     + +RGE  I  
Sbjct: 106 GLTIVLTYRGGELVEAVTRGNGIIGEVITNNAKNFQNVP--LRIEYKGELILRGEAVIKY 163

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI-FAKG 253
           +DF  +ND +     + Y NPRN  SG +R+LNP     R + F V  + +   I F   
Sbjct: 164 SDFKRINDSITDADAR-YKNPRNLCSGSVRQLNPAVTRERKVYFNVFNVVRADNIDFENS 222

Query: 254 QYEMLQKMRCLGFPVNNG--VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + +  +  +  GF V      ++A+    I  +    +S  +      DGLV  +D+ +L
Sbjct: 223 KAKQFEWAKNEGFDVVEYKFTQRASLADDIAKF----ESKIAENDIPSDGLVLLLDDIAL 278

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            ++LG  ++ PR  ++ K+++++ +T+L  I+    RTG++ PVA  EPV + G  ++ A
Sbjct: 279 GERLGSTSKFPRNAMAFKWSDERQTTKLKYIEWSPSRTGLINPVAVFEPVELEGTTVSRA 338

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN    + L            + VGD + V +A  +IP+V + +             P
Sbjct: 339 SLHNVSIFEELM-----------LGVGDEISVYKANMIIPQVYENLTKSNTE-----KIP 382

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C     RD   K         CT    C  + +++     SRDA NI+GL +  L
Sbjct: 383 KICPACG----RDTTIKKDNESKVLLCTNP-DCQIKHIKQYALMASRDALNIDGLSESTL 437

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F         I+  +D+F L + +     +I N+ GFG  S   L  ++++ +N ++ 
Sbjct: 438 EKFLSK----GFIKSDSDLFRLDKFK----DEIINMEGFGKRSYEKLIAALDEAKNTTVS 489

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++SLGI  +G+  A+ +AKY+ +      +I+ II+ + DD      +  +G+++A +
Sbjct: 490 RFLYSLGIAGIGSANAKMIAKYFDN------DIDRIISASKDDLRD---IEGIGEVLAGS 540

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
           I +F+++ +NI  VE+L K +       E     +   K  V TG+L     R++ +E +
Sbjct: 541 IEDFFKSEKNIENVESLRKIL--KFETEESGGGDKFAGKVFVITGSLTHFSNRNEMKELI 598

Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G  VS  +S KT+ +I  D  +  SK +KA++LGV+I++EE FL LL+
Sbjct: 599 EKNGGKVSGSVSSKTNFLINNDTGSNSSKNKKAKELGVEIISEEDFLKLLE 649


>gi|80159718|ref|YP_398462.1| putative NAD-dependent DNA ligase [Clostridium phage c-st]
 gi|78675308|dbj|BAE47730.1| putative NAD-dependent DNA ligase [Clostridium phage c-st]
          Length = 649

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 186/711 (26%), Positives = 337/711 (47%), Gaps = 67/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   + +  L +E++   + YY   K ++ D E+D        +             N 
Sbjct: 1   MENQIQRVKKLIKELNDASNKYYNSDKTVMTDKEWDDKYEELKQLEQE----TGVVFSNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G E+   L KV H+IP  SLEK  +I +L KFI                  +  K
Sbjct: 57  PTQKVGYEVKSKLDKVVHNIPLKSLEKTKSINNLEKFIR------------GKTIIIMDK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG    + YE G+ +  + RG+G  GED++  ++    IP  L ++    +++ GE  I
Sbjct: 105 GDGLTCELIYENGELIQGSTRGNGTIGEDITHNVKTFKNIP--LQIDFKGYLKLSGESVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
              DF  +N ++    +  Y+N RN  +G +R+L+    + R + F+   L +   +  K
Sbjct: 163 LDRDFELINSKLDEADK--YSNSRNLVAGSVRQLDSKICSNRNVRFYAFNLLECENVDFK 220

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            + +  + +  LGF +    +  +    +    + M+       + IDGLV+  ++    
Sbjct: 221 TKEDQFKFLNQLGFEIIEYTK-CDPKQDLEGIISNMQKSAYERGFPIDGLVFTYNDIKYA 279

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG+    P   I++KF +++  T+ +  + Q+ RTG++ PVA+ EPV I G++I  AT
Sbjct: 280 NSLGDTLHHPLHSIAYKFYDEEYETKYITTEWQVSRTGMINPVAKFEPVEIEGSVIERAT 339

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DY + L            +  GD + V +A +VIPKV+          +     P 
Sbjct: 340 LHNLDYFQDL-----------KLGQGDTIKVIKANQVIPKVM-----SNKTMSNAEVIPI 383

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +       K  K      CT  L CSA+ + R+ H+ SR+A NI+GL ++ ++
Sbjct: 384 ECPVCGGKTE----EKLLKTARVLICTN-LECSAKHISRITHYCSRNAMNIDGLSEKTIE 438

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         ++   DI+ L++ +     +I NI GFG  S  N+ ++I K ++  LE 
Sbjct: 439 KFVN----LGYLKDIDDIYNLEQYK----EEIINIDGFGLKSYNNMIEAIEKSKHCKLEN 490

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGI++VG   A+ L K + S               N +   +  +  +GD++   I
Sbjct: 491 FIFALGIQNVGLGTAKLLVKKFKSIDKIM----------NCNLEEIYSIDGIGDVVGNEI 540

Query: 613 VEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
            +++    N  ++  + K +        ++N S++++ K  V TG +   + R++ +  V
Sbjct: 541 YKYF--VINQDSINLVSKLLKYIDFEEVKENNSNKLQGKTFVITGDVHIFKNRNEIKAKV 598

Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++G  V+  +S+KT+ +I    ++  SK +KA+ L + I+ EE+FL +++
Sbjct: 599 EEMGGKVTGSVSKKTNYLINNDSESASSKNKKAKDLNIPIITEEEFLGMIK 649


>gi|154499783|ref|ZP_02037821.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC
           29799]
 gi|150271381|gb|EDM98638.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC
           29799]
          Length = 673

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 189/709 (26%), Positives = 309/709 (43%), Gaps = 62/709 (8%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
             L   ++ + + YY  + P + D+ YD L      +  A       +  N P N +G  
Sbjct: 10  RELNDRLNRYRNEYYNLNSPSVSDAVYDRLFEELQELESA----TGVQMSNSPTNTVGYP 65

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
               L K  HSIP LSL+K+ N E+L +F+                     K+DG  I +
Sbjct: 66  AVSKLEKTNHSIPLLSLDKVKNTEELCRFM------------GEHQVMFMLKLDGLTIKL 113

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            YE GK V AA RGDG  GE V+   RAI  IP  +     + + V GE +I  +DF  L
Sbjct: 114 TYEGGKLVEAATRGDGDVGEIVTHNTRAIGGIPENIQ--YEDRLVVTGEAFIRPSDFEQL 171

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQK 260
              ++    KPY N RN A+G +R  +      R L F    + +  E   + + E L+ 
Sbjct: 172 KTTLVDSDGKPYKNGRNLAAGSVRLFDAGACLGRRLMFMPFNVLEGMEELPR-KSERLKA 230

Query: 261 MRCLGFPVNNG--VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +R LGF        ++  T         ++K   +     IDG+V   ++ +L K  G  
Sbjct: 231 LRPLGFLPCKYMVTKRPLTQKETEDGIRQLKEYAADADIPIDGIVITYNDIALSKSCGRT 290

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
               +  ++ KF +    T+L  I+   GRTG + PVA  EPV I G  ++ A+LHN  +
Sbjct: 291 GHHYKDGLAFKFEDDLFQTKLQTIEWTPGRTGEIAPVAIFEPVEIDGCEVSRASLHNLSF 350

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+ L+           +  G R+LV +   +IP V + +   R   +     P  CP C 
Sbjct: 351 IEDLE-----------LAPGCRILVSKRNMIIPHVEENLD--RGNFSMDAVIPHQCPCCG 397

Query: 439 SRVVRDLNPKTGK-----LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                      G+     ++    C    AC  ++L++  HFVS+ A NIEGL +  L+ 
Sbjct: 398 EPTRIHETSGRGENGEERVIKTLFCDNA-ACETRRLKQFVHFVSKKAMNIEGLSEGTLEK 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     I    DI+ L + +     +I  + GFG+ S   L+D+I + R+ + ER+
Sbjct: 457 LIGR----GWIHSYLDIYRLDQHR----NEIIRMDGFGEKSWQRLWDAIQQSRSTTFERY 508

Query: 554 IFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           + ++ I  VG   ++ L + +  S   F   +               ++P  G+ +   I
Sbjct: 509 VIAMDIPMVGNTASKVLCREFHGSLDEFRDAVYG--------GYDFRQLPDFGETLHNNI 560

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQKIQRHKAQE 668
            E++    N C  E L   ++        N      +    K +V TG ++   R +   
Sbjct: 561 QEWFNKEENFCIWEELQMMMNIQKPVETDNQTINRDNSFSGKTIVVTGKVEPYTRDEMNS 620

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +  LGAV  + ++RKTD ++ G+  GSKL KA++L + ++  E+F  +
Sbjct: 621 LIASLGAVAGSSVTRKTDYLVCGEKAGSKLSKARELDIPVLTPEEFFRM 669


>gi|167465474|ref|ZP_02330563.1| DNA ligase, NAD-dependent [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 579

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 177/608 (29%), Positives = 292/608 (48%), Gaps = 51/608 (8%)

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
                    F +E K DG  I + Y++G  V A+ RG+G  GE + A ++ I ++P  + 
Sbjct: 15  PSTPLPEPSFAVELKFDGLTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVPLEIP 74

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
                +IEV+GE  +  +     N         P  N RNAA+G LR LNP     R L 
Sbjct: 75  YKE-GLIEVQGEGMMLLSVLDQYNQTAAE----PLKNARNAAAGALRNLNPKVTAERRLT 129

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F + +G +         EM+  ++   F VN  V+  NT   +     +++  R    +
Sbjct: 130 AFFYNVGFSDRKQFMNHQEMIAFLKENHFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDF 189

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            IDG V KV +   ++ LG   + PRW I++KF  ++ +T L  +  ++GRTG +TPVA+
Sbjct: 190 LIDGAVIKVTDIRTREVLGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAK 249

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +EPV + G  + N TL+N   I+  +             +G  V ++R+ +VIP+++  +
Sbjct: 250 VEPVELAGVTVQNCTLNNIGDIERKNLKHA---------LGSLVYIRRSNDVIPEILGKV 300

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
             E   D +   +P  CP C + + +          A   C   L C  Q + R+ HF S
Sbjct: 301 TEE--IDGEEIKYPEHCPACGTELEQR--------GAHLFCPNRLGCKPQLIGRITHFAS 350

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           RDA +IE       +  ++       +R PAD++ L          I  +  FG+    N
Sbjct: 351 RDAMDIETFSVMTAEQLYQQ----LDVRDPADLYDLT------YDDIIQLPRFGEKKANN 400

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L D+I K +   L  F+F+LGI + G    + LA+++ S       +             
Sbjct: 401 LLDAIEKSKERDLSSFLFALGIPNTGKTTTKVLAEHFRSLDKVMDAV----------VEE 450

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEAL-----LKEVSPSIGRHEKNVSSEIENKKL 652
           LI +P VG I+A +I  F+++P  I ++  +       ++    G+ E +       K +
Sbjct: 451 LIALPDVGGIVADSIYTFFRDPIMIESIRRMKKAGVQAQMEAEEGKAEIDPGHPFYGKTI 510

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN-E 711
           V TGTL  + R +A + +  LGA V+  +S+KTDI+I G+N GSKL KA+QLG+++++ E
Sbjct: 511 VLTGTLSSMSRDEAAKKLESLGAKVTGSVSKKTDIVIAGENAGSKLAKAEQLGIRVIDNE 570

Query: 712 EQFLFLLQ 719
           ++ L LL 
Sbjct: 571 DELLHLLD 578


>gi|210617503|ref|ZP_03291606.1| hypothetical protein CLONEX_03828 [Clostridium nexile DSM 1787]
 gi|210149290|gb|EEA80299.1| hypothetical protein CLONEX_03828 [Clostridium nexile DSM 1787]
          Length = 653

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 191/712 (26%), Positives = 329/712 (46%), Gaps = 67/712 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ ++ +  L Q ++     YYQ +  I+ + EYD L     A+             + 
Sbjct: 1   MEQKKQRMQELVQLLNEAGKAYYQGTAEIMSNYEYDKLYDELLALEKE----LGITLASS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K   +  L++F+                  +  K
Sbjct: 57  PTVNVGYEVLSELPKERHEKPMLSLDKTKEVSKLKEFLGSQKAR------------ISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y+ G    A  RG+G  GE ++   +    +P  L ++    + +RGE  I
Sbjct: 105 LDGLTIVLTYQNGTLQKAVTRGNGEVGEVITNNAKVFKNLP--LHISYQGELILRGEAII 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF  +N+E+  V  K Y NPRN  SG +R+LN      R + FF   L K  ++  K
Sbjct: 163 GYRDFEKINEEIEDVDAK-YKNPRNLCSGSVRQLNNEITAKRNVKFFAFSLVKADDVDFK 221

Query: 253 -GQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +   ++ ++  GF V  G    A T    V +++E     +   +  DGLV   D+ +
Sbjct: 222 NSRIYQMEWLKEQGFEVVEGYEVTAGTIEERVKFFSE---KIADNDFPSDGLVLVYDDIA 278

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             + LG  ++ PR   + K+A++   T LL+I+    RTG++ PVA  EPV + G  ++ 
Sbjct: 279 YGQSLGTTSKFPRDSFAFKWADEIRETTLLEIEWSPSRTGLINPVAIFEPVELEGTTVSR 338

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN   ++ L+           + +GD + V +A  +IP++ + +      D      
Sbjct: 339 ASVHNISIMEELE-----------LGIGDTIAVYKANMIIPQIAENLTRSGVKD-----I 382

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C  +              A  CT    C A+ L+    FVSRDA NI+GL +  
Sbjct: 383 PEECPVCHGKTEIR----KVSDAKALYCTNE-ECGAKHLKSFALFVSRDALNIDGLSEAT 437

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+ F         I   +DIF L++ +      I+++ GFG+ S  NL  SI K R  +L
Sbjct: 438 LEKFIAK----GFINHYSDIFHLEQYKDA----IKSMEGFGEKSYVNLQKSIEKARVTTL 489

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + I+SLGI ++G   A+ + K          +I  ++    ++      +  +G +IA+
Sbjct: 490 PKLIYSLGIANIGLANAKVICKE------LNFDIEKMLHVTEEELSE---ISGIGPVIAK 540

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEY 669
           A V ++   +++     LL E+       E   +   EN   V TG+++    R++ +  
Sbjct: 541 AFVSYFAKEQHVEEFRRLLTELEIP-KEEESKEAQIFENMNFVITGSVEHFANRNEVKAV 599

Query: 670 VTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +   G  V+  ++ KT+ +I    ++  SK +KA++LGV I++EE FL +L+
Sbjct: 600 IESKGGKVTGSVTSKTNYLINNDIESTSSKNKKARELGVPIISEETFLKMLE 651


>gi|255283571|ref|ZP_05348126.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
 gi|255265833|gb|EET59038.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
          Length = 667

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 188/716 (26%), Positives = 316/716 (44%), Gaps = 59/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ    +  L Q ++ H + YY  + P I D EYD L     A+      +        
Sbjct: 1   MEQKITRMKQLIQNLNKHRNAYYNLNAPTITDQEYDRLYDELAALEKETGVILSY----S 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G     SL KVTH    LSL+K   + ++   +TR                   K
Sbjct: 57  PTQTVGYYPVSSLAKVTHPHRLLSLDKTKQVSEICALLTRNPALL------------MLK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG    + YE GK + A+ RGDG +GED++  I A   +P  L++   + + + GE YI
Sbjct: 105 LDGLTTKLVYENGKLLQASTRGDGETGEDITHNIPAYRNVP--LTIPYTKRLVITGESYI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
             +DFL L D +     KPY N RN A+G +R LNP     R + F    + +  E    
Sbjct: 163 HADDFLRLKDTLFDSSGKPYRNARNLAAGSVRSLNPEKCAPRCVYFSPFHVLEGLEEIPH 222

Query: 253 GQYE--MLQKMRCLGFPVNNGVRQAN---TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  L  ++  GF +   +   +   +   +     +++   +     IDG+V   D
Sbjct: 223 SDSRKLRLSSLKPFGFDICPYIALTDPVPSQEQVQEAIEQLRKEATEKQIPIDGIVAIFD 282

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             S  K  G      +  +++KF ++Q  T L DI+    R+G + PV   + V I G  
Sbjct: 283 SLSYSKSCGSTGHHYKDGLAYKFEDEQYETVLRDIEWTPTRSGEIAPVGVFDTVEIDGCK 342

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LHN  +IKGL+           +  G R+LV +   +IP + + +   R+ D   
Sbjct: 343 VSRASLHNLTFIKGLE-----------LVPGCRILVSKRNMIIPHIEENLDRGRYHD--- 388

Query: 428 FSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              P  CP C S+          G+++    C G  +C  Q L + +HF  + A NIEGL
Sbjct: 389 -IVPPLCPCCSSKTWICRKKASDGRIIETVHC-GNPSCDTQILRKYEHFTGKKAMNIEGL 446

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
               L+ F         I    D++ L R +     +I  + GFG+ S   L+DSI K R
Sbjct: 447 SSATLERFLD----LGYIMSFQDLYHLDRYR----EQILQLEGFGEKSFDRLWDSIQKSR 498

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +    R++ ++ I  +G   +R L       + F   +++  A    D+     +   G+
Sbjct: 499 HTDFVRYLVAMDIPMIGRTKSRIL------NEIFQGSLDDFEAAAAGDY-DFSTLEDFGE 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQR 663
           I+   I  ++ +  N+   + L KE +         ++   +    + +V TG L+   R
Sbjct: 552 ILNHNIHSWFSDEENLHLWKELQKEFTFESKEENTMKETRENPFRGRTVVATGKLEHFTR 611

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                 + +LG    + +++KTD +I G+  GSKL KAQ+LG+ ++ E++FL ++ 
Sbjct: 612 DGINTKILELGGKPGSSVTKKTDYLICGEKAGSKLSKAQELGIPVLTEQEFLDMIA 667


>gi|325261872|ref|ZP_08128610.1| DNA ligase, NAD-dependent [Clostridium sp. D5]
 gi|324033326|gb|EGB94603.1| DNA ligase, NAD-dependent [Clostridium sp. D5]
          Length = 651

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 186/711 (26%), Positives = 315/711 (44%), Gaps = 67/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   +  +  L + ++     Y Q    I+ + EYD L      +         +   + 
Sbjct: 1   MADKKNRMQELVELLNRARRSYEQEDTEIMSNYEYDKLYDELLGLEQE----LGTTLASS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K  ++E L+ F+                  +  K
Sbjct: 57  PTINVGYEVLSELPKERHERPMLSLDKTKDVEQLKTFL------------GDKEAVISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y     V A  RG+G  GE ++   +    +P  +  +    + +RGE  I
Sbjct: 105 LDGLTIVLTYRDKTLVKAVTRGNGEVGEVITNNAKVFKNLPMHIPFD--GELILRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF  +N E+  V  K Y NPRN  SG +R+LN      R + FF   L   + +  K
Sbjct: 163 GYKDFEKINAEIEDVDAK-YKNPRNLCSGSVRQLNNEITAKRNVRFFAFSLVSAAGVDFK 221

Query: 253 -GQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             + E    +   GF V       A+T    V ++       +   +  DGLV   D+ +
Sbjct: 222 NSRTEQFDWLEKQGFEVVEHHLVTADTIEEQVEWFA---GEIAENDFPSDGLVLVYDDIA 278

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             + LG  A+ PR   + K+A++   T LL+I+    RTG++ PVA  EPV + G  ++ 
Sbjct: 279 YGQSLGSTAKFPRDSYAFKWADEIRDTTLLEIEWSPSRTGLINPVAIFEPVELEGTTVSR 338

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN   ++ L+           + VGD + V +A  +IP++ + +      D      
Sbjct: 339 ASVHNLSIMEELE-----------LGVGDEIQVYKANMIIPQIAENLTRSGVKD-----I 382

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C       +   T        CT    C A+Q++    FVSRDA N+EGL +  
Sbjct: 383 PSACPVCGHDTRISMENDT----KTLYCTNP-QCQAKQIKSFALFVSRDALNMEGLSEAT 437

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+ F         I+   DIF L R +     +I+ + GFG+ S  NL +S+   RN +L
Sbjct: 438 LEKFIAR----GFIKDYIDIFHLDRYE----EEIKTMDGFGEKSYVNLINSVENSRNTTL 489

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + ++SLGI ++G   A+ + +   +                     L  +  VG +IA+
Sbjct: 490 PKLVYSLGIANIGLANAKMICRALGNDPQ---------KLTEATVEELSEISGVGGVIAK 540

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEY 669
             V+++ +P +      LL+EV   +   +       EN   V TG+++    R++ +E 
Sbjct: 541 TFVDYFADPGHRELFARLLEEVEIPVEEVQAEAQ-IFENMNFVITGSVEHFANRNEVKEL 599

Query: 670 VTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +   G  V+  ++ KT+ +I  D  +  SK +KA+ L + I++EE+FL +L
Sbjct: 600 IESRGGKVTGSVTSKTNYLINNDVQSASSKNKKARDLEIPIISEEEFLKML 650


>gi|153855784|ref|ZP_01996785.1| hypothetical protein DORLON_02806 [Dorea longicatena DSM 13814]
 gi|149751911|gb|EDM61842.1| hypothetical protein DORLON_02806 [Dorea longicatena DSM 13814]
          Length = 647

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 185/709 (26%), Positives = 323/709 (45%), Gaps = 68/709 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L   ++     YYQ ++ I+ + EYD L      +     +L  +   N P   +G 
Sbjct: 1   MKELVSLLNKASRAYYQEAQEIMSNYEYDRLYDELKELE---DELGITLS-NSPTVNVGY 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E+   L K  H  P LSL+K   +E+L+ F+                  +  K+DG  + 
Sbjct: 57  EVVSELPKERHESPMLSLDKTKEVEELKNFV------------GDQKVLISWKMDGLTVV 104

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  GK   A  RG+G  GE ++   +    +P  ++      + +RGE  I   DF  
Sbjct: 105 LTYRDGKLYKAVTRGNGEVGEVITNNAKVFKNVPVQIA--YQGELILRGEAVIGYKDFEK 162

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQYEML 258
           +N E+  V  + Y NPRN  SG +R+LN      R + F+   L +   + F   +   +
Sbjct: 163 INQEIEDVDAR-YKNPRNLCSGSVRQLNNQITAKRNVMFYAFTLVQADGVDFQNSRACQM 221

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + ++  GF          T   +     +  S  S   +  DGLV   D+ +  + LG  
Sbjct: 222 EWLKSQGFTTVEYYMV--TRDTVEDEVAKFSSKISENDFPSDGLVLTYDDIAYGRSLGRT 279

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+ PR   + K+ ++   T L +I+    RTG++ PVA  +PV + G  ++ A++HN   
Sbjct: 280 AKFPRDSFAFKWQDEIRETVLREIEWSPSRTGLINPVAIFDPVELEGTTVSRASVHNISI 339

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++ L+           + +GD++ V +A  +IP++ + +      D      P  CP+CQ
Sbjct: 340 MEELE-----------LGIGDKIEVYKANMIIPQIAENLTRSGVKD-----IPCKCPVCQ 383

Query: 439 SRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
               +R +         A  C     C A+ ++    FVSRDA NIEGL +  L+ F   
Sbjct: 384 GETKIRQVGNAK-----ALYCMNP-ECQAKHVKSFALFVSRDALNIEGLSEATLEKFISR 437

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   ADIF L + +     KI+ + GFG+ S   L +SI K R  +L R I+SL
Sbjct: 438 ----GYIHTFADIFHLDQYK----EKIQKMEGFGEKSYKKLTESIEKARTTTLPRVIYSL 489

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI  +G   A+ + +          ++ +++  + ++      +  VG+++A+A V ++ 
Sbjct: 490 GIAGIGLANAKVICRE------LKYDVESLLKVSEEEL---NEIQGVGEVLAKAFVGYFA 540

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAV 676
           + +++     LL E++  I +         E    V TG+++    R + +E +  LG  
Sbjct: 541 DAKHVENFRRLLNELT--IPKETVTKQQIFEGVNFVITGSVKHFANRGEVKELIESLGGK 598

Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  ++ KT+ +I  D  +  SK +KA +LG+ I++EE FL L+ Q  T
Sbjct: 599 VTGSVTSKTNYLINNDVTSTSSKNKKANELGIPIISEETFLELVNQEET 647


>gi|297571016|ref|YP_003696790.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595]
 gi|296931363|gb|ADH92171.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595]
          Length = 843

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 200/857 (23%), Positives = 353/857 (41%), Gaps = 170/857 (19%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           + A+     L  ++    + YY     +++D+ YDAL R   A+   FP L     P+ P
Sbjct: 10  DDAQVRWQELAPQLLDAQETYYSTGDQVMVDATYDALMRELRALEEEFPQL---WSPDSP 66

Query: 75  LNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             K+G +     L  VTH     SL+ +++ ++L ++ T + +       + + FT E K
Sbjct: 67  STKVGAKPVRGGLPSVTHISRMYSLQDVFSRDELAEWFTGVSKELP----DGVSFTTEVK 122

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           IDG  + + Y  G    AA RGDG +GEDV+  +R I +IP  L  + IPE++E+RGEV+
Sbjct: 123 IDGLALNLTYRNGWLERAATRGDGVTGEDVTRNVRMIASIPDQLRGDRIPELVEIRGEVF 182

Query: 193 ISKNDFLALND------------------------------------------------E 204
                F   N                                                 +
Sbjct: 183 FPVAAFTQYNASVDARNAQIDARNERISAANREIAAQNRAIRAANASLPSDQQVAEIPSK 242

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF------AKGQYEM 257
                 KP+ NPRNAASG +R+ +   +  R L+F  HGLG               Q  +
Sbjct: 243 RREAHVKPFVNPRNAASGTMRQEDTGSVALRSLDFLAHGLGALDGADDVLRASLSSQEGV 302

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
                  G PV+N     ++   I  + +  ++ R++LP++ DG+  K+D+ + Q++LG 
Sbjct: 303 YSMFIEWGLPVSNVTETHSSLAEINDFLDRFQNARTSLPFEFDGVAIKIDDRATQERLGY 362

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             R PRW +++KF   +  TRLLDI +Q+GRTG +TP A +EPV + G+ ++ ATLHN  
Sbjct: 363 TTRVPRWAVAYKFPPTEVQTRLLDIRVQVGRTGRVTPYAVMEPVFVDGSTVSQATLHNPT 422

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            +             + +R+GD V++++AG++IP+VV  I +ER      F  P+ CP C
Sbjct: 423 EVAR-----------KGVRIGDVVVIRKAGDIIPEVVGPIESERDGSEVEFVMPTHCPDC 471

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            + +         +     RCT   +C AQ  +R+ H  SR A ++E LG +   +    
Sbjct: 472 GAPI-----AAISEGDIDLRCTNQKSCPAQLTQRVVHIGSRGALDVEALGDESAVWLCNP 526

Query: 498 E-----------------------------------------DPAFSIRIPADIFTLQRR 516
           +                                         D   +I     I   + +
Sbjct: 527 DKNRADALTAFATGSALIVEDNAGKTHKLHLSEQARIERGIVDKHGAILDHHHIVAPELQ 586

Query: 517 QQTSTTKIENILGFGDVSV---------TNLYDSINKRRNISL--ERFIFSLGIRHV--G 563
           ++    + ++ +   +  +                 K+        +++ +   +    G
Sbjct: 587 RELGIPQPQHPILSTEAELFHLTADQARDVWIWQAEKKAGEPTGNWKYVRAAWTKPTWKG 646

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL---IRVPLVGDIIAQAIVE------ 614
              AR ++K     +   + ++ +    + D       + +  VG + +QA+ +      
Sbjct: 647 TGDAREISKETHPSKTLLKILDELEGAKHKDLWRKLVALNIRHVGPVASQALADTFGSLD 706

Query: 615 --------------------------FYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEI 647
                                     ++    +   VE      V+      + +V   +
Sbjct: 707 AMREASLEDISAVEGVGPIIASSFLAWFGEEWHRQIVERWQDAGVTFKKEESDADVPQTL 766

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
               +V TG+LQ   R   +E +   G   +  +S+KT++++VG+N GSK  KA++LG++
Sbjct: 767 AGLTIVATGSLQHFTRDGIKETIAAHGGKATGSVSKKTNLVVVGENAGSKATKAEELGIR 826

Query: 708 IMNEEQFLFLLQQYNTT 724
           I+NE QF  LL+     
Sbjct: 827 ILNEAQFQQLLESGELA 843


>gi|331092462|ref|ZP_08341286.1| DNA ligase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401202|gb|EGG80794.1| DNA ligase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 653

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 185/713 (25%), Positives = 322/713 (45%), Gaps = 65/713 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   +K +  L   ++     YYQ +  I+ + +YD L      +     +L  +   N 
Sbjct: 1   MTDKKKRMQELIALLNEAGKAYYQGATEIMSNFQYDKLYDELAELEK---ELNVTLS-NS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K   +  L++F+             +    +  K
Sbjct: 57  PTVNVGYEVLSELPKERHEKPMLSLDKTKEVSSLKEFL------------GNQKAVISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y  G+   A  RG+G  GE ++   +    IP  L ++    + +RGE  I
Sbjct: 105 LDGLTIVLTYRDGELQKAVTRGNGEVGEVITNNAKVFKNIP--LHISYKGELVLRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF  +N+E+     K Y NPRN  SG +R+LN      R + FF   L K   +  K
Sbjct: 163 GYKDFERINEEIEDADAK-YKNPRNLCSGSVRQLNNEITAKRNVRFFAFSLVKAEGVDFK 221

Query: 253 -GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             + E ++ +   GF V        T   I               +  DGLV   D+ + 
Sbjct: 222 NSRNEQMRWLSQQGFDVVEHEEV--TSADIEEKVEMFAHKIEKNDFPSDGLVLVYDDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR   + K+A++   T L +I+    RTG++ PVA  + V + G  ++ A
Sbjct: 280 GQSLGTTAKFPRDSFAFKWADEIRETTLREIEWSPSRTGLINPVAIFDSVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++ L+           + +GD + V +A  +IP++ + +      D      P
Sbjct: 340 SVHNISIMEELE-----------LGIGDTIQVYKANMIIPQIAENLTRSGVQD-----IP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C+ +              A  CT    C A++++    F SRDA NI+G+ +  L
Sbjct: 384 DVCPVCREKTEIRKVNNA----KALYCTNP-ECQAKRIKSFALFASRDALNIDGMSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F         I+  ADIF + R +     KI+++ GFG+ S   L  S+ K R  +L 
Sbjct: 439 EKFILE----GFIKEYADIFHMDRYE----EKIKSMEGFGEKSYNKLQASVEKARTTTLP 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + I+SLGI ++G   A+ + K +          NN     N     L ++  VG++IA  
Sbjct: 491 KVIYSLGIANIGLANAKMICKEFQ---------NNADEIMNATPERLNQIDGVGEVIAGT 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
            VE++   ++    + LL+E++      E+      +  + V TG++     R++ +E +
Sbjct: 542 FVEYFSVEKHRKEFQNLLRELTIPKESAEEG-KQIFDGIQFVITGSVNHFANRNEVKEVI 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQY 721
              G  V+  ++ KT+ +I  D     SK +KA++LG+ I++EE+FL +L++ 
Sbjct: 601 ESKGGKVTGSVTSKTNYLINNDTASTSSKNKKARELGIPIISEEEFLEMLRKG 653


>gi|260587930|ref|ZP_05853843.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|331084525|ref|ZP_08333626.1| DNA ligase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260541457|gb|EEX22026.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|330401233|gb|EGG80824.1| DNA ligase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 650

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 190/705 (26%), Positives = 321/705 (45%), Gaps = 68/705 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L + ++     YYQ  + I+ + EYD L      +               P   +
Sbjct: 5   KRMKELLKLLTEASKAYYQEDREIMSNFEYDKLYDELVQLERE----TGVTLAGSPTASV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E    L K  H  P LSL+K  +IE LR FI                     K+DG  
Sbjct: 61  GYEALDELPKEAHESPMLSLDKTKDIEALRAFIGEQKSLL------------SWKLDGLT 108

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + Y +GK   A  RG+G  GE ++   +    IP  L +     + +RGE  I+ +DF
Sbjct: 109 IVLTYHEGKLQKAVTRGNGTVGEVITGNAKVFKNIP--LQIAYQGELVLRGEAIITYSDF 166

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQYE 256
             +N ++  V  K Y NPRN  SG +R+LN      R +NF+   L K   + F   + +
Sbjct: 167 EKINAQIEDVDAK-YKNPRNLCSGSVRQLNNEITAKRNVNFYAFSLVKAEGVDFQNSREQ 225

Query: 257 MLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
               ++  GF V         T    + Y++   S      +  DGLV   D+ +  + L
Sbjct: 226 QFCWLKEQGFDVVEYRVVTGETLDEAMDYFSNQVSK---NDFPSDGLVVLYDDIAYGESL 282

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+ PR   + K+ ++   T L +I+    RTG++ PVA  EP+ + G  ++ A++HN
Sbjct: 283 GSTAKFPRNAYAFKWKDEIRETVLKEIEWSASRTGLINPVAIFEPIELEGTTVSRASVHN 342

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              +K L            + +GD++ V +A  +IP++ + +       +     P  CP
Sbjct: 343 ISIMKELQ-----------LGIGDKIQVYKANMIIPQIAENLTR-----SGNLEIPKICP 386

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C+    ++        V A  C     C A++++    FVSRDA NI+GL +  L+ F 
Sbjct: 387 VCK----KEARVIKTNEVEALYCMNE-ECQAKKIKSFTLFVSRDAMNIDGLSEATLEKFI 441

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   IR   DIF +++ +         + GFG  S  NL  S+ K ++ +L R ++
Sbjct: 442 LK----GFIRDFGDIFEIEKYKDEILE----MEGFGQKSYENLIASLEKAKHTTLPRVLY 493

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGI ++G   A+ + K          +I  +IA N ++  S   +  +G +IA+A  E+
Sbjct: 494 SLGIANIGLANAKLICKE------LQYDIEKMIAANEEEISS---IEGIGPVIAKAYTEY 544

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLG 674
           + N  N+     LL  +       E+N+S  +E K+ V TG++     R + +E + + G
Sbjct: 545 FANEENLKKFRHLLSHLELEEVTREENLS--LEGKQFVITGSVVHFANRAQLKEEIEKRG 602

Query: 675 AVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
             V+  ++ KT  +I  D  +  SK +KA++LG+ I++E+ F+ +
Sbjct: 603 GKVTGSVTSKTHYLINNDTTSNSSKNKKAKELGIPILSEDDFMKM 647


>gi|262199205|ref|YP_003270414.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365]
 gi|262082552|gb|ACY18521.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365]
          Length = 751

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 215/786 (27%), Positives = 349/786 (44%), Gaps = 115/786 (14%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S + AR E   L  E+S HD  YY  ++PII D EYD L ++  AI    P        
Sbjct: 1   MSDDTARAEYLGLVDELSDHDRRYYVEAEPIISDVEYDKLLKKLRAIEEEHPAWVVEW-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFT 129
             P  ++G     S  KV   +P LSL+  ++  +L  F  R+ R      D   ++ + 
Sbjct: 59  -SPTQRVGHSPISSFPKVVREVPMLSLDNTYDESELADFHQRVLRGLGLSGDEAGAVNYV 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +EPKIDG  + + YE+G F     RGDG  GED+S  +R +  +P  L   +  I  VRG
Sbjct: 118 VEPKIDGIGVELSYERGAFRLGTTRGDGRVGEDISQNLRTLRGLPLRLREEVDLI--VRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E ++++ DF ALN+     G +P+ NPRN  +G L++L+P  +  R +   ++ +    E
Sbjct: 176 EAFMTRADFTALNEARAEAGEEPFKNPRNTVAGSLKQLDPRLVAERPMQVILYEVV-GGE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            FA+  +E+L ++R LG P +    +A+++  +          R+ LP+D+DGLV KV+ 
Sbjct: 235 RFAREHFEVLARLRELGLPTSEHNSRADSWAALKREVAAWAERRAELPFDVDGLVIKVNS 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  +  LG  ++ PRW I++KF  +Q +T + D+++ +GRTG +TPVA L PV + G  +
Sbjct: 295 FDQRDALGTTSKFPRWAIAYKFPAQQVTTVIEDLEVNVGRTGAVTPVAMLTPVEVSGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN D I+ L            I   DRVL+++AGE+IP+V+ ++        Q F
Sbjct: 355 QRASLHNWDQIERL-----------GIGPKDRVLLEKAGEIIPQVIAVVER---ASEQVF 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             PS CP C   ++++          A  C   LAC  Q L  L+ F  R   NI+GLG+
Sbjct: 401 PRPSTCPSCGHGLIQEPGR------VALLCPNRLACPRQLLASLEFFAGRGQMNIDGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR-N 547
           +       +      +   AD+F L +    +  +      FG+ S  NL D+I + R +
Sbjct: 455 KVAQALLDT----GLVSNVADLFALSKEDLLTLER------FGEQSAQNLVDAIARARDS 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD- 606
            +  R + +LG+ H+G   AR++A +Y         +++         L +      G+ 
Sbjct: 505 ATFSRLLAALGVAHIGGVAARAIAAHYPDMDALLALVDSTAPSAEAAALEVTAEDGAGED 564

Query: 607 -IIAQAIVEFYQNPRNICAVEALLKEV------------------------SPSIGRHEK 641
              A A  E     +     +A  K                          +P   R   
Sbjct: 565 ASSAAAKAETKSKAKTKTKSKAKTKAGKSATASETETETETETETAADAEAAPDAPRSFT 624

Query: 642 NVSSEIENKKLVFTGTLQKIQRH-KAQE---YVTQLGAVV---------SAILSRKTDII 688
           +V  EIE    +   +L+   R  +A+E    + + G              +LS K  ++
Sbjct: 625 DVLGEIEGVGRIMASSLESFLRDPEAREVLRLLRERGVNPREPATEVTGEGVLSGKR-LV 683

Query: 689 IVG-------------DNPGSK----------------------LEKAQQLGVKIMNEEQ 713
           I G             +  G K                      L  A++ GV +++E  
Sbjct: 684 ITGTLSRPRSDIKKAIEAAGGKVTGSVSKQTAYLVAGADTGSAKLASAEKYGVPVIDEAA 743

Query: 714 FLFLLQ 719
              LL 
Sbjct: 744 LDALLA 749


>gi|225028066|ref|ZP_03717258.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353]
 gi|224954614|gb|EEG35823.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353]
          Length = 653

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 187/712 (26%), Positives = 320/712 (44%), Gaps = 68/712 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +  +  L + ++     YYQ  + +  + EYD L     A+      +        P 
Sbjct: 2   DKQARMKKLVEVLNQASKAYYQEDRELFSNKEYDELYDELQALEAETGIVMSQ----SPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G E+   L K TH  P LSL+K  + E LR ++                  L  K+D
Sbjct: 58  QNVGYEVLSELEKETHESPMLSLDKTKSPEALRDWL------------GEKEGLLSWKMD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  G    A  RG+G  GE ++   R    +P  +       + +RGE  I  
Sbjct: 106 GLTVVLTYRDGVLQKAVTRGNGVVGEVITNNARVFKNLPAKI--PFAGEVVLRGEAVIKY 163

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           +DF  +N+ +  V  + Y NPRN  SG +R+LN      R + FF   L K      +  
Sbjct: 164 SDFKKINEGIEDVDAR-YKNPRNLCSGSVRQLNNEVTAKRNVFFFAFALVKAEGRELENS 222

Query: 255 YEM-LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            E  +  ++ LGF +    R       I+              +  DGLV   D+ +   
Sbjct: 223 VESNMLWVQNLGFEIVPYKRV--DRENIMGEIQNFSEKIVENDFPSDGLVLIYDDIAYGI 280

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+ PR  I+ K+A+++A TRLL I+    RTG++ P+A  EPV + G  ++ A+L
Sbjct: 281 SLGRTAKFPRNSIAFKWADEEAETRLLHIEWSPSRTGLINPIAVFEPVELEGTTVSRASL 340

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   ++GL+           +   D + V +A  +IP++ + +   +    QP      
Sbjct: 341 HNISIMEGLE-----------LGENDHIKVYKANMIIPQIAENLT--KSGTCQPIE---H 384

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C       +       V    C     CSA++++   H+VSRDA NI+GL +  L  
Sbjct: 385 CPACGGATEVRIENN----VKTLYCVNPY-CSAKKVKLFSHYVSRDAMNIDGLSEATLMK 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       +    D++ L++ +     +I  + G+G+ S  NL  SI K R+  L RF
Sbjct: 440 MIEQ----GFLSELNDLYNLEQYK----EQIIAMDGYGEKSYNNLMQSIEKSRDTQLFRF 491

Query: 554 IFSLGIRHVGAEIARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++ +GI +VG+  AR L +++  S +N                  + ++  +G++IA ++
Sbjct: 492 VYGIGILNVGSSNARLLCRHFGNSLENLR----------GASVEEMTQIDGIGEVIATSV 541

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI-QRHKAQEY 669
            ++++N  N   +E LL  +             E  + +K  V TGT++    R + +E 
Sbjct: 542 HDYFENEHNQKLLEKLLPYLHFEEENVSAGGEQEQSLLDKTFVITGTVEHFANRKELKEK 601

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LG  V+  +S+KTD +I  DN    SK +KA++LG+ ++ EE+FL +++
Sbjct: 602 IESLGGKVTGSVSKKTDYLINNDNMSSSSKNKKAKELGIPVITEEEFLSMIE 653


>gi|290962622|ref|YP_003493804.1| DNA ligase [Streptomyces scabiei 87.22]
 gi|260652148|emb|CBG75280.1| putative DNA ligase [Streptomyces scabiei 87.22]
          Length = 704

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 333/751 (44%), Gaps = 89/751 (11%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M     + ++A +  QA        ++       YY      + D  YD L R       
Sbjct: 11  MTTSAAVIVDAAAYAQA-------VEDAVRASAAYYTGGTSALDDDTYDRLVRGIAVWEA 63

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A P+      P  P  K+ G        V H++  LSL+ +++ E+   +   + R   +
Sbjct: 64  AHPEQVL---PESPTGKVAGGAVEG--DVPHTVAMLSLDNVFSAEEFTAWTASLAR---R 115

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
              +   F +EPK+DG  +  RY +G+      RGDG +GEDVS  I  I  +PR L+  
Sbjct: 116 IGHDVERFGVEPKLDGLAVAARYTRGRLTRLITRGDGTAGEDVSHAIGTIEGLPRELAE- 174

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240
            P  +EVRGEV ++   F   N+     G +P+ANPRNAA+G LR       T  + FF 
Sbjct: 175 -PVTVEVRGEVLMTTAQFEHANEVRTEHGGQPFANPRNAAAGTLRARE-RAYTVPMTFFG 232

Query: 241 HGLGKTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQ----ANTFHGIVSYYNEM 288
           +GL       A            E++ +   LG             A T   ++    E+
Sbjct: 233 YGLLALPGTDADSAARLGELAHSELMARAAGLGVNTTASTAVPGVTAATVEEVLDRVKEI 292

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
             +R+ LP+ IDG+V K D  + Q+  G   R+PRW I++K    +  TRLL++   +GR
Sbjct: 293 AGLRAELPFGIDGIVIKADLAADQRAAGSGTRAPRWAIAYKLPAVEKITRLLEVQWNVGR 352

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TGI+ P   LEPV I G+ IT ATLHN   I             RD+R+GD V+V RAG+
Sbjct: 353 TGIIAPRGVLEPVEIDGSTITYATLHNPADITR-----------RDLRLGDHVMVHRAGD 401

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+V   + + R  D QP  FP  CP C S +               RC  G  C    
Sbjct: 402 VIPRVEAPVAHLRTGDEQPIVFPEVCPRCGSGI--------DTGEQRWRCENGRNC--HL 451

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           +  L + V RD  ++EGLG  ++    +    A  +   AD+F L R Q  S  ++    
Sbjct: 452 VASLSYAVGRDQLDVEGLGHTRVVQLVE----AGLVADLADLFALTREQLLSLDRM---- 503

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G+ S  NL  +++  R   L R + +LG+R  G  ++R +A+++ +  +         
Sbjct: 504 --GETSTDNLLAALDTARGRPLSRVLCALGVRGTGRSMSRRIARHFATMDDIRAA----- 556

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CAVEALLKEVSPSI---------- 636
                D  ++ RV  +G   A +IV        +    V A +    P            
Sbjct: 557 -----DAEAIQRVEGIGTEKAPSIVAELAELAPLIDKLVAAGVNMTEPGATPPAPAGDPE 611

Query: 637 --GRHEKNVSSEIENKKLVF----TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
                 +     +    +V     TG L+K+ R++  E + + G   S+ +S+KT +++ 
Sbjct: 612 GPEEGAEGAGGPLAGMAVVVTGAMTGVLEKLSRNQMNELIERAGGRASSSVSKKTSLVVA 671

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G+N GSK  +A+ LGV++   ++F  L+  +
Sbjct: 672 GENAGSKRARAESLGVRLAGPDEFAALVADF 702


>gi|218133029|ref|ZP_03461833.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991902|gb|EEC57906.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC
           43243]
          Length = 656

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 172/713 (24%), Positives = 316/713 (44%), Gaps = 65/713 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++ +    +  L   ++     YY   + I+ + EYDAL      +      +      +
Sbjct: 4   TMNRDIDRIKELVDILNKAGRAYYAQGQEIMSNYEYDALYDELAELEKKTGCVLA----S 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G E+   L K  H  P LSL K  ++++L  ++                     
Sbjct: 60  SPTVNVGYEVLSELPKERHEKPMLSLGKTKSVDELVSWLGSQKGLL------------SW 107

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  I + Y  G+   A  RG+G  GE ++   +    +P  +       + +RGE  
Sbjct: 108 KMDGLTIVLTYNNGEMTKAVTRGNGEVGEVITGNAKVFANVPVTI--PYKGELILRGEAV 165

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           I  +DF  +N+ +   G K Y NPRN  SG +R+LN      R +NFF   L K   +  
Sbjct: 166 IRYSDFEKINELIPEEGAK-YKNPRNLCSGSVRQLNSRITKERNVNFFAFTLVKADGVDF 224

Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           K  + E L+ +   GF          T   + S  +  ++      +  DGLV   D+ +
Sbjct: 225 KNSRREQLEWLASQGFQTVEYKEV--TADNLRSTVSWFENAIKDNDFPSDGLVILYDDIA 282

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
               LG  A+ PR  ++ K+ ++ A T+LL+I+    RTG++ PVA  EPV + G  ++ 
Sbjct: 283 YGDSLGMTAKFPRNSLAFKWTDETAQTKLLEIEWSASRTGLINPVAVFEPVELEGTSVSR 342

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN   ++ L+           + VGD + V +A  +IP++   +      D      
Sbjct: 343 ASVHNISIMEELE-----------LGVGDTIEVYKANMIIPQIAKNLTRSGVKD-----I 386

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C  +        +     +  CT    C A+ ++   HFV+RDA NI+GL +  
Sbjct: 387 PQICPVCGMKTEIR----SLNDAKSLYCTNP-DCQAKHVKSFVHFVARDAMNIDGLSEAT 441

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+ F +       +   AD++ L   + T    I ++ G G  S  N+  +I++ R+ +L
Sbjct: 442 LEKFIQHGM----LHEFADLYHLDDYRDT----IIDMDGLGVKSYDNMMAAIDRSRHTTL 493

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + I+SLGI +VG   A+ + K   +           +            +  VG++IA 
Sbjct: 494 PKLIYSLGIANVGLSNAKMIVKNTGTLDRILSATREEL----------CAIDGVGEVIAD 543

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEY 669
           + V ++ + ++   +  L+ E+           ++ + +   V TG+L     R++ +E 
Sbjct: 544 SFVSYFADDKHRQGLNRLVAELDIEAEEMASGENAVLADMVFVITGSLNHYSNRNELKEL 603

Query: 670 VTQLGAVVSAILSRKTDIII--VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +LG  V+  ++ KT  +I     +  SK + A +LGV ++ E++F+ ++++
Sbjct: 604 IEKLGGKVTGSVTGKTSYLINNDSTSSSSKNKTAAKLGVPVITEDEFIKMIEE 656


>gi|145356969|ref|XP_001422695.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582938|gb|ABP01012.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 755

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 248/772 (32%), Positives = 380/772 (49%), Gaps = 93/772 (12%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM--NLSLFK 88
           HD  YY  ++P+I DSEYD ++ R DAIA A      +    G   ++G        L K
Sbjct: 2   HDGKYYNDAEPVISDSEYDGMRARYDAIAAA---HPTAAKAGGARARVGATPDGASGLEK 58

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-----IFFTLEPKIDGTMITIRY 143
           + H++P  SL   +++  +  F+ R+ +   + +  +     I +  EPK+DG   ++RY
Sbjct: 59  IAHAVPMRSLGNAFDVGQVEAFMKRVEKLRGETEGEAATTTAIEYCAEPKVDGASASLRY 118

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E G+ VYA  RGDG  GEDV+  +     +P  L+   P ++E+RGEV+++  DF  +N 
Sbjct: 119 ENGELVYAVSRGDGEMGEDVTRHLIGARGVPMKLAEPYPAVLEIRGEVHVADEDFQRVNA 178

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG------KTSEIFAKGQYEM 257
           E  A G + + N RNAA+G +R L   D    L F  +G G      + +    + Q E 
Sbjct: 179 ERAATGLRVFKNARNAAAGAMRTLVVDDNQMPLRFLAYGWGAVGASNEETNAPWRTQSEF 238

Query: 258 L-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           L   +   GF     +  A T   ++  Y+ ++  R T+PY+IDG+VYKV+   LQ  LG
Sbjct: 239 LSAFLPAQGFDAVPFLGVAKTIGELIEAYDALEIARPTMPYEIDGVVYKVNSVELQTALG 298

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR PRW I+HKF    A T L  I+IQ+GRTG LTPVA L+PV+IGGA I+ ATLHN 
Sbjct: 299 ADARQPRWAIAHKFTAMSAVTTLRAIEIQVGRTGALTPVALLDPVDIGGASISRATLHNF 358

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA---------QP 427
           D I             + ++VG +V V+RAG+VIP+VV +  ++    +           
Sbjct: 359 DEIAR-----------KHLKVGAQVTVERAGDVIPRVVSLAGDDLAEASAYAEDIKPLPE 407

Query: 428 FSFPSFCPICQSRVVR-DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           +  PS CP C S VVR  L+     + +  RCTGGL C +Q +ERL HF +RDA +I GL
Sbjct: 408 WLPPSKCPDCGSSVVRAPLSASKTAMGSIVRCTGGLKCPSQSMERLLHFCARDALDIRGL 467

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST---------------TKIENILGFG 531
            +  L+   +       ++ PADIFTL+RR    +               +K E   G  
Sbjct: 468 ARGTLETLHRE----GVVKTPADIFTLERRFGPDSGDAVPTWWRYAGVKNSKGEIKHGSD 523

Query: 532 --DVSVTNLYDSINKRRN-ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
               S   L+ +I  RR  + L RFI++LGI ++GA  A+ LA +Y S   F +      
Sbjct: 524 GLKQSAVKLFQAIEVRRQGVPLHRFIYALGIPNIGAHTAKVLATHYGSLAAFKKAALAAA 583

Query: 589 AHNNDDW--LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                     +L  V  VG ++AQ++V+F+  P N   V+ ++      +     +  ++
Sbjct: 584 KGGPASLAHAALTHVDGVGPVLAQSLVDFWGEPGNAFIVDEIIATGVVVLDADASSSKNQ 643

Query: 647 ------------------------------IENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                                         +   K++FTGT+    R    + +   G  
Sbjct: 644 PSPRFAEPASSSSVSPTPSPTVPSPEPTADLRGMKILFTGTIDGFSRDDVHDLIRAAGGD 703

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
           V++ LSRKT +++ G   G SKL KA+ L V I++  +F+  L   + +L +
Sbjct: 704 VASTLSRKTALVVAGVGAGPSKLAKARDLAVPIVDASRFVSALTSGDGSLPL 755


>gi|167769644|ref|ZP_02441697.1| hypothetical protein ANACOL_00978 [Anaerotruncus colihominis DSM
           17241]
 gi|167668005|gb|EDS12135.1| hypothetical protein ANACOL_00978 [Anaerotruncus colihominis DSM
           17241]
          Length = 674

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 179/712 (25%), Positives = 315/712 (44%), Gaps = 61/712 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L   ++ + D YY  + P + D  YD L      +          +  N P   +
Sbjct: 7   EKQRELNDRLNRYRDEYYNRNAPSVSDEVYDRLFDELKELEQE----TGIQMANSPTQTV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G      L K  H IP LSL+K  +  DL  F+                  L  K+DG  
Sbjct: 63  GYPAVSRLEKTRHEIPLLSLDKTKSSMDLLNFM------------GEQQVMLMLKLDGLT 110

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G+ + AA RGDG  GE ++   RAI  IP  ++    E + V GE +I  +DF
Sbjct: 111 VKLTYENGELLEAATRGDGDEGEIITHNTRAISGIPSHIT--YKERLVVTGEGFIRPSDF 168

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
             L   +     KPY N RN A+G +R ++      R L F   G+ +      + + + 
Sbjct: 169 EELKTSLQDSSGKPYKNGRNLAAGSIRLMDAKTCQERRLVFMPFGVLEGFPHLTR-KSDK 227

Query: 258 LQKMRCLGFPVNNG--VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           L+++R LGF        +Q  T   + +   +++   +     IDG+V   ++ +  +  
Sbjct: 228 LRELRALGFQPCKYLVTKQKLTLENVEAGIYQLRQYATDKDIPIDGIVVSFNDIAYAQSC 287

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G      +  +++KF +    + L  I+   GRTG + PVA   PV I G  ++ A+LHN
Sbjct: 288 GRTGHHYKDGLAYKFEDDLHESLLQYIEWTPGRTGEIAPVAVFTPVEIDGCEVSRASLHN 347

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
             +I+ L+           +  G+R+LV +   +IP V + +   R   +   + P  CP
Sbjct: 348 LSFIEDLE-----------LMAGNRILVSKRNMIIPHVEENLD--RGGFSMADTIPHVCP 394

Query: 436 ICQSRVVRDLNPKTGK-----LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            C        +   G+     ++    C     C  ++L++  HFVS+ A  IEGL +  
Sbjct: 395 CCGQPTRIHESSGKGEKSEDRIIKTLYCDNP-DCETRRLKKFVHFVSQKAMEIEGLSEAT 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+ F         I    DI+ L R +     +I  + GFG+ S   L+D+I + RN + 
Sbjct: 454 LEKFIGQ----GFIHSYLDIYRLDRYR----AEIVRMDGFGEKSWQRLWDAIQQSRNTTF 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER++ S+ I  +G   ++ L + +        +++         +    ++P  G+ +  
Sbjct: 506 ERYLISMDIPMIGNTASKVLGRVF------HYDLDEFRDAVYGGY-DFRQLPDFGETLHN 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHK 665
            I +++    N C  E L   ++   P++  H ++    +    K +V TG ++   R  
Sbjct: 559 NIHDWFCVEDNFCIWEELQTMMNIQKPAVAEHSEDRVQDNPFVGKTIVVTGKVEPYTRDG 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             + +  LGA   + +S+KTD ++ G+N GSKL KA+ LGV +++  +F  +
Sbjct: 619 INDLIESLGAHAGSSVSKKTDYLVCGENAGSKLSKARDLGVTVLSPAEFFSM 670


>gi|323485875|ref|ZP_08091210.1| hypothetical protein HMPREF9474_02961 [Clostridium symbiosum
           WAL-14163]
 gi|323400863|gb|EGA93226.1| hypothetical protein HMPREF9474_02961 [Clostridium symbiosum
           WAL-14163]
          Length = 674

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 179/712 (25%), Positives = 316/712 (44%), Gaps = 61/712 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L   ++ + D YY  + P + D  YD L      +          +  N P   +
Sbjct: 7   EKQRDLNDRLNRYRDEYYNRNAPSVSDEVYDRLFDELKELEQE----TGIQMANSPTQTV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G      L K  H IP LSL+K  +  DL  F+                  L  K+DG  
Sbjct: 63  GYPAVSRLEKTRHEIPLLSLDKTKSSMDLLNFM------------GEQQVMLMLKLDGLT 110

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G+ + AA RGDG  GE ++   RAI  IP  ++    E + V GE +I  +DF
Sbjct: 111 VKLTYENGELLEAATRGDGDEGEIITHNTRAISGIPSHIT--YKERLVVTGEGFIRPSDF 168

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
             L   +     KPY N RN A+G +R ++      R L F   G+ +      + + + 
Sbjct: 169 EELKTSLQDSSGKPYKNGRNLAAGSIRLMDAKICQERRLVFMPFGVLEGFPHLTR-KSDK 227

Query: 258 LQKMRCLGFPVNNG--VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           L+++R LGF        +Q  T   + +   +++   +     IDG+V   ++ +  +  
Sbjct: 228 LRELRALGFQPCKYLVTKQKLTLENVEAGIYQLRQYATDKDIPIDGIVVSFNDIAYAQSC 287

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G      +  +++KF +    + L  I+   GRTG + PVA   PV I G  ++ A+LHN
Sbjct: 288 GRTGHHYKDGLAYKFEDDLHESLLQYIEWTPGRTGEIAPVAVFTPVEIDGCEVSRASLHN 347

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
             +I+ L+           +  G+R+LV +   +IP V + +   R   +   + P  CP
Sbjct: 348 LSFIEDLE-----------LMAGNRILVSKRNMIIPHVEENLD--RGGFSMVDTIPRVCP 394

Query: 436 ICQSRVVRDLNPKTGK-----LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            C        +   G+     ++    C     C  ++L++  HFVS+ A +IEGL +  
Sbjct: 395 CCGQPTRIHESSGKGENGEDRIIKTLYCDNP-DCETRRLKKFVHFVSQKAMDIEGLSEAA 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+ F         I    DI+ L R +     +I  + GFG+ S   L+D+I + RN + 
Sbjct: 454 LEKFIGQ----GFIHSYLDIYRLDRYR----AEIVRMDGFGEKSWQRLWDAIQQSRNTTF 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER++ S+ I  +G   ++ L + +        +++         +    ++P  G+ +  
Sbjct: 506 ERYLISMDIPMIGNTASKVLGRVF------HYDLDEFRDAVYGGY-DFRQLPDFGETLHN 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHK 665
            I +++    N C  E L   ++   P++  H ++    +    K +V TG ++   R  
Sbjct: 559 NIHDWFCVEDNFCIWEELQTMMNIQKPAVVEHSEDREQDNPFVGKTIVVTGKVEPYTRDG 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             + +  LGA   + +S+KTD ++ G+N GSKL KA+ LGV +++  +F  +
Sbjct: 619 INDLIESLGAHAGSSVSKKTDYLVCGENAGSKLSKARDLGVTVLSPAEFFSM 670


>gi|260202156|ref|ZP_05769647.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T46]
 gi|289444580|ref|ZP_06434324.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46]
 gi|289417499|gb|EFD14739.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46]
          Length = 517

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 169/544 (31%), Positives = 271/544 (49%), Gaps = 31/544 (5%)

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFV 240
           PE++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P    R  L    
Sbjct: 2   PEVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMIC 61

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           HGLG          ++    +R  G PV+     A    G+    +     R  + ++ID
Sbjct: 62  HGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEID 121

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + P
Sbjct: 122 GVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTP 181

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ +  ATLHN   IK            + + +GD V++++AG+VIP+V+  +V  
Sbjct: 182 VKVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVEL 230

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    + F  P+ CP C S +         +  A  RC     C  Q  ER+ H  SR+ 
Sbjct: 231 RDGSEREFIMPTTCPECGSPL-----APEKEGDADIRCPNARGCPGQLRERVFHVASRNG 285

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IE LG +      +++     I    ++F L  R    T       G    +   L  
Sbjct: 286 LDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLV 341

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +++K +   L R + +L IRHVG   AR+LA  + S    A    + +A           
Sbjct: 342 NLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQLAA---------- 391

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           V  VG  IA A+ E++    +   V+         +   +++V   +    +V TG+L  
Sbjct: 392 VEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTG 451

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL  
Sbjct: 452 FSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLAD 511

Query: 721 YNTT 724
              +
Sbjct: 512 GPAS 515


>gi|160935782|ref|ZP_02083157.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441526|gb|EDP19236.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC
           BAA-613]
          Length = 651

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 192/710 (27%), Positives = 319/710 (44%), Gaps = 64/710 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   + +  L   +      YYQ S+ I+ + EYD L     ++               
Sbjct: 1   MEDRIQRMKELVSILREAGKAYYQESREIMSNFEYDKLYDELVSLEKE----TGVTLSGS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E+   L K TH  P LSL+K  ++EDL++++                  L  K
Sbjct: 57  PSQQVGYEILSELPKETHGSPMLSLDKTKSVEDLQEWL------------GDQKGLLSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + YE+G    A  RG+G  GE ++   R    IP  L+++    + +RGE  I
Sbjct: 105 MDGLTIVLTYEEGTLAKAVTRGNGEIGEVITPNARVFANIP--LNISYQGQLILRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FA 251
           + +DF  +N  +  V  K Y NPRN  SG +R+LN      R ++F    L K   + F 
Sbjct: 163 TYSDFERINSGIEDVDAK-YKNPRNLCSGSVRQLNSQITAERNVHFEAFALVKADGVDFH 221

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             +    + ++  GF V +          + +                DGLV   D+ + 
Sbjct: 222 NSRKAQFEWLKGQGFEVVHYEEV--DAASLPASVEGFAKAVEGNDIPSDGLVLTYDDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR  I+ K+ ++   T L  I+    RTG++ PVA  EPV + G  ++ A
Sbjct: 280 GESLGRTAKFPRNSIAFKWKDEIRETALSYIEWSASRTGLINPVAVFEPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++GL+           + VGD + V +A  +IP++ + +      D      P
Sbjct: 340 SVHNLSIMEGLE-----------LGVGDTITVYKANMIIPQIEENLTRSGVKD-----IP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C  R            V +  CT    C A++++    FVSRDA NI+GL +  L
Sbjct: 384 EECPVCGGRTEIR----KVNDVKSLYCTNP-DCQAKKIKSFTLFVSRDALNIDGLSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F +    A  I   ADIF L+  +         + G G  S  NL  SI    N +L 
Sbjct: 439 EKFIQ----AGFIHEYADIFHLEEHRDAIVE----MEGLGQKSYDNLIASIKTASNTTLP 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGI  +G   A+ L + +        + + +     ++    + V  +G ++AQA
Sbjct: 491 RMVYGLGIAGIGLANAKMLCREFK------YDFDKMRHAGEEEL---VAVDGIGGVLAQA 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
            ++++   RN   V+ LL E++    + E    +  E    V TG+++    R + QE +
Sbjct: 542 WMDYFALGRNNQMVDRLLAELNIEKEQPETAGEAVFEGMNFVITGSVEHFANRKELQELI 601

Query: 671 TQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLL 718
              G  V+  ++ KT  +I  D     SK +KA++LGV I++EE+FL +L
Sbjct: 602 ESKGGKVTGSVTAKTAYLINNDAASNSSKNKKAKELGVPIISEEEFLRML 651


>gi|254994698|ref|ZP_05276888.1| DNA ligase [Anaplasma marginale str. Mississippi]
          Length = 624

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 223/606 (36%), Positives = 343/606 (56%), Gaps = 48/606 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQAR+ L+ L  ++ +HD  Y+    P + D +YD L +    +   FPD+++ +D   
Sbjct: 2   LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDISQYDD--- 58

Query: 74  PLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             + +G  +++    KV H  P LSLE  + ++D+ KFITR+ RF + + D+ +  + E 
Sbjct: 59  YADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG   +  Y  GK    A RG+GH GED++     +  +P  L  + PE++EVRGE+Y
Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQL-DSAPEVLEVRGEIY 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +   DF  L       G   +ANPRNAA+G +R+LN   +  R L++  +    ++    
Sbjct: 178 MHHEDFEKL------RGSCNFANPRNAAAGSIRQLNQKIVEERNLSYVAYSAVNST---F 228

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E+L+++   GF  N  V   +     +++YN + + RS L YDIDG+VYKV+  + 
Sbjct: 229 ATQQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSTNF 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK LG   +SPRW I+HKF   +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A
Sbjct: 289 QKLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN + I+            +D+R+GD V+VKRAGEVIP+VVD+    R    Q F FP
Sbjct: 349 SLHNLNEIER-----------KDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C S++ R+          A RC   L+C AQ LER+KHFVSRD  NI GLG +Q+
Sbjct: 398 SHCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQI 451

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +FF         I   ADIF+L+ +        E+  G+G+ SV NL  +I     + L 
Sbjct: 452 EFF----CNHGLIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLS 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FIF+LGIR +G   A+ +A++Y SY+N+ Q +  +      +    I++  +G      
Sbjct: 506 NFIFALGIRFIGVGAAKLIAEHYRSYKNWHQAMLALT-----ETHDTIQIRGLGKK---- 556

Query: 612 IVEFYQ 617
             +F++
Sbjct: 557 -HKFFE 561


>gi|47459030|ref|YP_015892.1| NAD(+)-dependent DNA ligase [Mycoplasma mobile 163K]
 gi|81614352|sp|Q6KI95|DNLJ_MYCMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|47458358|gb|AAT27681.1| NAD(+)-dependent DNA ligase [Mycoplasma mobile 163K]
          Length = 671

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 211/707 (29%), Positives = 357/707 (50%), Gaps = 54/707 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +   E + L+ +I+  +  Y+ Y +P++ DS YDA   +     + +      ++ + P 
Sbjct: 15  RIISEYNDLKNKINLWNKAYFDYDEPLVEDSIYDATLLKLIKFENQY---KFLDNSDSPT 71

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             IG +++    KV H  P LSL K +  +DL+ F   I +      +    + LE KID
Sbjct: 72  KNIGAKVSKKFSKVQHQFPMLSLNKAYKFDDLKIFERHINK-LGFFPN----YFLELKID 126

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I+++Y+ G  + A  RGDG SGEDV+  +  I  IP+ +  + P  IE+RGE+Y+SK
Sbjct: 127 GLSISLKYDNGNLIQALTRGDGISGEDVTENVFQIQDIPKQIKYSKP--IEIRGEIYLSK 184

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
           + F  +N+   +     +ANPRNAASG LR+L+ + +  R LN F + +    +   K  
Sbjct: 185 STFYEINECQKSQNLTIFANPRNAASGSLRQLDSSIVKERKLNSFFYSVTNPLDHKIKNF 244

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS--IRSTLPYDIDGLVYKVDEFSLQ 312
            +    ++   F V +  +  +T      +  + +    R  L Y+IDG+V KVD+FSL 
Sbjct: 245 NDQELFLKENNFQVPSLNKFVDTIEKAYEFIKDFEKNNYREKLNYEIDGIVVKVDDFSLY 304

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG+ ++ PR MI+ KF++    T+L+DI I +GRTG +T  A LEPV I G L++ AT
Sbjct: 305 DILGQTSKFPRSMIAFKFSDISIETKLIDIFISVGRTGKITYNAILEPVIINGTLVSAAT 364

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN +Y++ L            +   D V + +AGE+IPKVV +    +      F    
Sbjct: 365 LHNYEYVESL-----------KLNKNDNVKIIKAGEIIPKVVSL---SKKNSETIFKRIE 410

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           +C  C  ++V+  +           C     C   +L +++HF S+ A NI GLG Q ++
Sbjct: 411 YCTSCNEKLVQPEDE------VDQYCINK-KCLMIRLRKIEHFASKKAMNILGLGFQNIE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FFK       +   +D+F L++ +      IE+   FG+ S  NL +SIN+ ++ SLE+
Sbjct: 464 KFFK----LGILTKYSDLFFLEKYKNL----IESQPSFGEKSFNNLIESINRSKSNSLEK 515

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF++GI+ +G   A+ +A       N            N D+  L  +  +      ++
Sbjct: 516 FIFAIGIKQIGERSAKLIANEVKLLSNL----------INFDFEKLNNIRDISCKTINSL 565

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             F+ +   I  ++ +L+          +  S +++    V TGTL K  R   +E + +
Sbjct: 566 KCFFSDENEIEEIKIILELGLDFKNLENEFESKKLQGLNFVITGTLSKP-RDFFKELIIK 624

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLL 718
            G  V   +S + + ++ G+  GSK+EKAQ++  +KI++E +F  L+
Sbjct: 625 NGGNVLNSISNRINYLLTGEKSGSKIEKAQKINTIKILDENEFNKLI 671


>gi|308811310|ref|XP_003082963.1| COG0272: NAD-dependent DNA ligase (ISS) [Ostreococcus tauri]
 gi|116054841|emb|CAL56918.1| COG0272: NAD-dependent DNA ligase (ISS) [Ostreococcus tauri]
          Length = 808

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 245/797 (30%), Positives = 372/797 (46%), Gaps = 126/797 (15%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++L++++AR+EL  L +E+++HD  YY   + +I DSEYD+L+ R  AI    P  AR+ 
Sbjct: 63  DSLTVDEARRELERLNEELAHHDRSYYNDGEGVISDSEYDSLRARYLAIERLHPSAARAL 122

Query: 70  DPNGPLNKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
             +    ++G        L K+ H+ P  SL   ++I  +  F+ R+ +   +       
Sbjct: 123 GASA---RVGATPDDQSGLEKIAHATPMRSLGNAFDIAQVEAFVNRVEKAHGEI------ 173

Query: 128 FTLEPKIDGTMITIRYEKG------KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
                   G   ++RYE G       F  A +R                   P  L    
Sbjct: 174 --------GVDASLRYENGFSRCDETFSQARVR-------------------PTRLKAPY 206

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241
           P ++E+RGEV++++ DF  +N E  A G + + N RNAA+G +R LN  D    L F  +
Sbjct: 207 PAVLEIRGEVHVAEEDFRRVNAERAATGVRVFKNARNAAAGAMRLLNAEDNQMPLRFLAY 266

Query: 242 GLGKTSEIFAK------GQYEMLQ-KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G G   E  A        Q E L   +   GF     +   +T  G++  Y  ++  R +
Sbjct: 267 GWGAAGETDADANAPWVTQSEFLSSFLPSQGFDAVPVLGVTSTVEGLMETYEALEIARPS 326

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           +PY+IDG+VYKV+  +LQ+ LG  AR PRW I+HKF    A T L  I+IQ+GRTG LTP
Sbjct: 327 MPYEIDGVVYKVNSVALQQTLGADARQPRWAIAHKFTAMSAVTTLRAIEIQVGRTGALTP 386

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           V  L+PV+IGGA I  ATLHN D I           G + ++VG +V+V+RAG+VIP+VV
Sbjct: 387 VGLLDPVDIGGACIQRATLHNFDEI-----------GRKRLKVGAQVMVERAGDVIPRVV 435

Query: 415 DIIVNERHPDA---------QPFSFPSFCPICQSRVVR-DLNPKTGKLVAAHRCTGGLAC 464
            +   +    A           +  PS CP C + VVR  L+     +    RCTGGL C
Sbjct: 436 SLAGEDLAEAAAYPEDALPLPEWLPPSKCPDCGASVVRAPLSASKNAMGTIVRCTGGLKC 495

Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST--- 521
            +Q +ERL HF SRDA +I GL +  L+   +       ++ PADIFTL+RR    +   
Sbjct: 496 PSQSMERLLHFCSRDALDIRGLARATLETLHRE----GVVKTPADIFTLERRFGPDSGET 551

Query: 522 ------------TKIENILGFG--DVSVTNLYDSIN-KRRNISLERFIFSLGIRHVGAEI 566
                       +K E   G      S   L+ +I  +RR + L RFI++LGI ++GA  
Sbjct: 552 VPTWWRYTGVKNSKGEVKEGSDGLKASAVKLFQAIELRRRGVPLHRFIYALGIPNIGAHT 611

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDD--WLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
           A+ LA +Y+S   F +         +    + +L  +  VG ++AQ++V+F+  P N   
Sbjct: 612 AKVLATHYVSLDAFRKASMAAAKGGSTSLAYGALTHIDGVGPVLAQSLVDFWGEPANASI 671

Query: 625 VEALLKEVSPSIGRHEKNVSS-----------------------------EIENKKLVFT 655
           V  ++      +   E +  S                              +   K++FT
Sbjct: 672 VSEIIANGVVVLDAAESSKPSSTRQPPAAPLSSATSAASTKPAEYSAPGANLTGAKILFT 731

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
           GT+    R      +    A V + LS KT  ++ G   G +KL KA  LGV I++   F
Sbjct: 732 GTVDGYPRETVHRLIESASAEVVSSLSSKTTCVLAGSGAGPAKLAKASALGVPIIDAADF 791

Query: 715 LFLLQQYNTTLRIHDDD 731
           +  L +          D
Sbjct: 792 ILALDRGEPVSIPPRQD 808


>gi|293363574|ref|ZP_06610330.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2]
 gi|292552923|gb|EFF41677.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2]
          Length = 660

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 190/706 (26%), Positives = 338/706 (47%), Gaps = 51/706 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +    L + ++  ++ YY    P + D  YD   +    I   +P+       N P 
Sbjct: 4   EILERYKRLIENLNKWNNEYYNLDTPSVTDEVYDQEYQELLEIESMYPEAILE---NSPS 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             IGG  +    K  H+ P LSL K     ++ KF   I++      D +  F LEPK+D
Sbjct: 61  QIIGGFASNKFSKYKHNKPMLSLNKANINSEIEKFYQDIFKVV---TDQNKGFFLEPKVD 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ Y  GK V A  RGDG  GEDV+  I  I ++   L ++  E IE+RGEVY+SK
Sbjct: 118 GLSISLHYNNGKLVRAVTRGDGVFGEDVTENILQIKSV--KLKIDFLEEIEIRGEVYLSK 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            +F  LN   +   +K +ANPRNAA+G LR+L+   +  R L+  ++ + +        Q
Sbjct: 176 KNFEKLNKTFLENDQKLFANPRNAAAGTLRQLDKKIVKQRNLDVVLYEIVQPENYNISTQ 235

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            + ++ ++ LG       +       I+   N+ +++++TL Y+ DGLV K ++F+    
Sbjct: 236 EDAIKFIKNLGLNTQKNNQLLFELSDILKAVNDFETMKNTLEYECDGLVIKYNDFTKWNL 295

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++ P++ I++K+  +QA T +  ID+ +GRTG +  VA +EPV++  + ++ ATLH
Sbjct: 296 LGFTSKFPKYAIAYKYKAEQAITTIRQIDVSVGRTGKINYVANVEPVSLNQSTVSKATLH 355

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N DYI+ L+           + + D V++ +AGE+IPKV+ +    +      F     C
Sbjct: 356 NYDYIRDLN-----------LNINDEVVIIKAGEIIPKVISL---HKKNSLNSFEKVLNC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C+S +      +T        C   L C  + +  + +F S+   +I GLG + +   
Sbjct: 402 PSCKSVL------ETIDGNVDQYCLN-LNCEEKIINSIIYFASKPCLDINGLGDKIVKIL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           +++      I+   DI+ L  +      +I  +  F D  + NL  S+ + +  S+ + +
Sbjct: 455 YENNI----IKNIQDIYLLNNK----VEEIAKLRSFKDKKIENLLTSVEQSKGASISKVL 506

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            SLGI+++GA  ++ +AK           I+ +      +   L  +  +G    ++I  
Sbjct: 507 SSLGIKNIGARASKLIAKK----------IDKLEDLYYLNLNDLEDIADIGPKSVESIKL 556

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           + +N  N   +   L  +       + N   ++       TG L+  +R+     + Q G
Sbjct: 557 YLENESNKELIM-FLDNIFTYAHDKKANNEGKLNLLSFSITGKLEH-ERNYYISAIEQNG 614

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                + +++T  +IVG N G SKL KA + G K++  ++F  L+ 
Sbjct: 615 GEFHTVPTKQTSYLIVGLNAGDSKLNKALKNGTKLLTLKEFDKLIN 660


>gi|154503603|ref|ZP_02040663.1| hypothetical protein RUMGNA_01427 [Ruminococcus gnavus ATCC 29149]
 gi|260589901|ref|ZP_05855814.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|153795703|gb|EDN78123.1| hypothetical protein RUMGNA_01427 [Ruminococcus gnavus ATCC 29149]
 gi|260539708|gb|EEX20277.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|291547890|emb|CBL20998.1| DNA ligase, NAD-dependent [Ruminococcus sp. SR1/5]
          Length = 671

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 183/710 (25%), Positives = 305/710 (42%), Gaps = 58/710 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L   ++   + YY  + P I D+EYD +      +      +      N P   +
Sbjct: 11  EKIKQLVDYLNLQRNAYYNENSPNISDAEYDRIFDELVELEKQTGFILS----NSPTQTV 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G      L KV H +P LSL+K   ++DL  F  +            + F    K+DG  
Sbjct: 67  GYTPISELPKVKHPVPLLSLDKTKQVQDLISFAGK----------QPVLFM--LKLDGLT 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
             + YE G  V A+ RGDG  GE ++  I A   +P  LS+     + + GE +I  +DF
Sbjct: 115 TKLVYENGTLVEASTRGDGEIGELITHNIPAYVDVP--LSIPYKGRLVIVGESFIPTHDF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE---IFAKGQ 254
             L + +     +PY N RN ASG +R L+P +   R L+F    + +  +   +F   +
Sbjct: 173 ERLKETLRDGKGEPYKNGRNLASGSVRSLDPANCAGRCLHFMPFNVLEGLDSPFLFPDSR 232

Query: 255 YEMLQKMRCLGFPVNNGVR--QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              +  +   GF     +      T   +  Y   +  +       IDG+V   D     
Sbjct: 233 AMKISSLFDYGFQPCPYIAANHPLTSELVNQYIERLTDLAGKKHLPIDGIVMIFDSLDYS 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K  G      +  ++ KF ++   T L +I+    R G + PV   +PV I G  ++ AT
Sbjct: 293 KNCGRTGHHYKDGLAFKFEDETYETTLRNIEWTPTRFGEIAPVGVFDPVEIDGCSVSRAT 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN  +IK L+           +  G R+ V +   +IP + + +    + DA     P 
Sbjct: 353 LHNLTFIKELE-----------LVPGCRISVSKRNMIIPHIEENLERGHYVDA----VPP 397

Query: 433 FCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            CP C S+  +       G+L+    C     C +Q  +R  HFV + A NIEGL +  L
Sbjct: 398 VCPCCGSQTRIYQRKGNDGRLIETVHCDNP-NCDSQIRKRFTHFVGKKAMNIEGLSETTL 456

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F         ++   DI+ L   Q+        + GFG  S   L++SI   RN +  
Sbjct: 457 EKFL----TLGYLQTFPDIYHLNEHQEEIL----QLEGFGKKSFERLWNSITSSRNTTFV 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+ S+ I  VG   +R L   +         +       + D+    ++   GD + Q 
Sbjct: 509 RFLVSMDIPMVGRTKSRILDTVF------HGSLQEFFDAASGDY-DFTQLDDFGDTLNQN 561

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEY 669
           I +++ +  N+     L KE+     +    +   +      +V TG L    R +    
Sbjct: 562 IHDWFSDENNLILWHELQKELIFEERKEMNTMMKENVFTGCTIVATGKLAHFTRDEINSK 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +LGA   + +++KTD +I G+  GSKL KAQ LG+KI++E++FL ++ 
Sbjct: 622 ILELGAKAGSSVTKKTDYLICGEKAGSKLAKAQSLGIKILSEDEFLEMIA 671


>gi|325661475|ref|ZP_08150101.1| DNA ligase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472424|gb|EGC75636.1| DNA ligase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 660

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 191/709 (26%), Positives = 324/709 (45%), Gaps = 62/709 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L ++++ + + YY  S+ II D EYD L    + + +           N P   +
Sbjct: 5   ERIKELTKKLNEYRNAYYNESESIISDYEYDKLYDELEKLENE----TGLSFANSPTKTV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E+   L KV H+ P LSL+K  +++DLRKF             +     L  K+DG  
Sbjct: 61  GFEVKSELEKVKHTHPMLSLDKTKSVDDLRKFA------------SDKDCILSLKMDGLT 108

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
             + YE G  V A  RG+G  GE ++        IP  L++      E+ GE  I+ +DF
Sbjct: 109 CLLTYENGVLVQAETRGNGDVGEVITHNANVFENIP--LTIEYKGHFEIEGEAIIAYDDF 166

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK--TSEIFAKGQY 255
             +N+ +     K Y NPRN  SG +R+L+      R++ F    +       I +    
Sbjct: 167 KKINESLPE--DKKYKNPRNLVSGSVRQLDNKIAAQRHIKFIAWKVPTEVPEGICSNSFL 224

Query: 256 EMLQKMRCLGFPVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             L   + LGF +      +       +      +K+      Y IDGLV   ++    +
Sbjct: 225 HRLMYTKDLGFEIVPLFTYSGKSDKENLPDMIESLKTKAHDYGYPIDGLVMTYNDIQYGE 284

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG     PR  I++KF +++  T L +I+  +G++G LTP A  EPV I G ++  A+L
Sbjct: 285 SLGLTGHHPRHSIAYKFYDEEFETTLKNIEWTMGKSGSLTPTAVFEPVEIDGTMVERASL 344

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN    K L+ S            GD + V +A ++IP+V D +   R  +      PS 
Sbjct: 345 HNMSIFKDLELSH-----------GDTITVFKANQIIPQVSDNLD--RTLNNLCI-PPST 390

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CPIC  +     +  T  L+    C+    C  + L +L  FVSR+  NI+GL ++ L  
Sbjct: 391 CPICGGKTEIIKDNDTEVLM----CSNS-NCKGKLLGKLSAFVSRNKMNIDGLSEETLSK 445

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F         +   +DI+ L+         + N+ GFG  S+  L DSI K R++ L RF
Sbjct: 446 FIAR----GWLTCFSDIYKLKDYY----IHMINMSGFGRKSIDKLLDSIEKSRSVELNRF 497

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I +L I  VG   A+ ++K+         + +  +    D +   I +  +G+  +Q I 
Sbjct: 498 IAALSIPGVGDSTAKDISKH------CEYDFDTFVMRLIDKYNWSI-IDGIGEKTSQQIN 550

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQ 672
           E+  +  N      LL+ + P       +  + +  K  V TG + + + R + Q+++  
Sbjct: 551 EWIDDSSNREDFRKLLQTIIPVKPNEGNSTDNTLSGKNFVITGDVTQFKNRKELQKFIES 610

Query: 673 LGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  V+  ++ KT+ +I    ++  SK +KA++LG+ I++E++FL ++ 
Sbjct: 611 KGGKVTGSVTSKTNWLINNDVESTSSKNKKARELGIPIISEKEFLEMVN 659


>gi|309805867|ref|ZP_07699902.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b]
 gi|308167776|gb|EFO69920.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b]
          Length = 567

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 188/602 (31%), Positives = 307/602 (50%), Gaps = 46/602 (7%)

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
            + + + +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I 
Sbjct: 3   GHVVDYNVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI- 61

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
             IEVRGE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+      R L+ F++
Sbjct: 62  -DIEVRGECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIY 120

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                 E     Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG
Sbjct: 121 TWVNPPET-ITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDG 179

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVD+ +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PV
Sbjct: 180 IVLKVDDLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPV 239

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           N+ G +++ A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R
Sbjct: 240 NLAGTVVSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKR 288

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              + P+  P  CP C   +V   +        A RC   + C AQ  E + HF SR A 
Sbjct: 289 PQASLPYEIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAM 341

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI GLG + +            +   AD++ L   Q         +  F D S+ NL ++
Sbjct: 342 NIVGLGPKIVRQLIALH----LVNDIADLYFLSAAQLA------KLDHFKDKSIQNLLNA 391

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   +  S+E  +F LGI HVGA+ AR +A+ +       +               L+++
Sbjct: 392 IENSKQNSVELLLFGLGIDHVGAKAARLIAQKFHDLNTIREC----------SIADLMQI 441

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGT 657
             +G  IA+++V++++       ++ L               +    +  + K +V TG 
Sbjct: 442 DTIGQAIAESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKEKNVVLTGK 501

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L    R    + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  
Sbjct: 502 LAHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAK 561

Query: 718 LQ 719
           L 
Sbjct: 562 LN 563


>gi|154502207|ref|ZP_02039267.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149]
 gi|153797086|gb|EDN79506.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149]
          Length = 663

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 182/706 (25%), Positives = 315/706 (44%), Gaps = 68/706 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L ++++ + D YY  ++  + D+EYD L      + +    +      N P   +
Sbjct: 18  KRIKELVEQLNEYRDAYYNEARSDVSDAEYDRLFDELSELENETGVVYT----NSPTQSV 73

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E+   L KV HS P LSL+K  +++DL KF                   L  K+DG  
Sbjct: 74  GYEVKSELEKVKHSHPMLSLDKTKSVDDLVKFA------------GDKDCILSLKMDGLT 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
             + YE G+ V A  RGDG  GE ++   +    IP  LS++     E+ GE  I+  DF
Sbjct: 122 CLLTYENGELVQAETRGDGEIGELITHNAKVFENIP--LSIDYKGHFEIEGEAIITYEDF 179

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N  +     K Y NPRN ASG +R+L+      R++ F    +   ++I +      
Sbjct: 180 DKINKSLPD--DKKYKNPRNLASGSVRQLDSKIAAQRHIKFIAWKVP--TDIASSSFINR 235

Query: 258 LQKMRCLGFPVNNG--VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           LQ    +GF       +R       I     +++       + IDGLV   ++ +  + L
Sbjct: 236 LQYALDIGFDTVPFLPIRGNCNAEFINIVVEQLRKRAKEKSFPIDGLVATYNDITYGESL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G     P+  I+ KFAE    T L +I+  IG+TG LTPVA  + V++ G  ++ A+LHN
Sbjct: 296 GMTGHHPKHSIAFKFAEDSEETVLREIEWSIGKTGTLTPVAIFDSVDLAGTSVSRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              +K L+           I +G  V V +  E+IP+++    N    D      P+ CP
Sbjct: 356 ISIMKELN-----------ISIGSTVTVVKKNEIIPQIISCDANAMDAD-----IPTTCP 399

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C     R +     +++    C     C  + L R+ HFVS+   +I GL ++ +    
Sbjct: 400 VCGGET-RIVKENDSEVLM---CVNP-HCKGKLLGRVSHFVSKKGMDISGLSEETIKKLI 454

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I    DI+ L +       ++  + GFG  SV  L  SI   + + L++FI 
Sbjct: 455 E----LGWITEITDIYNLDQYY----DRLSTMSGFGKKSVDKLRTSIENSKTVRLDKFIA 506

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SL +  +G   ++ L K + ++  F              +    ++   GD++   I  +
Sbjct: 507 SLSVPGIGTSQSKELVKAFGTWDKFRDASVG--------YYDFTQLDGFGDVLNNNIHSW 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLG 674
           +++  N   +   L  +           ++ +  K  V TG + K + R + +E + + G
Sbjct: 559 FEDMSN---IADYLASLMTFESEDNSKTNNSLNGKSFVVTGKVYKFKNRDEVKEAIEKFG 615

Query: 675 AVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             V+  +++ T  +I    ++  SK +KA++LGV+I+NEEQ + +L
Sbjct: 616 GKVTGSVTKSTFALINNDIESNSSKNKKAKELGVQIINEEQLIEML 661


>gi|4235372|gb|AAD13189.1| NAD-dependent DNA ligase [Thermus aquaticus]
          Length = 527

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 184/568 (32%), Positives = 302/568 (53%), Gaps = 49/568 (8%)

Query: 63  PDLARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           P+L   + P+ P  ++G     S    V H     SL+  ++++++R F  RI R   +K
Sbjct: 1   PEL---KSPDSPTEQVGARPLESTFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK 57

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
                 +T+E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  I TIPR L+  +
Sbjct: 58  --GPFLYTVEHKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIRTIPRRLT-GV 114

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFV 240
           P+ +EVRGEVY+    FL LN E+   G + + NPRNAA+G LR+ +P    R  L    
Sbjct: 115 PDRLEVRGEVYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATF 174

Query: 241 HGLGKT-SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           + LG    E   K Q+++L  ++  GFPV +G  +A    G+   Y      R  LP++ 
Sbjct: 175 YALGLGLEETGLKSQHDLLLWLKERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEA 234

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V K+D+ +L ++LG  AR+PR+ +++KF  ++  TRLL +  Q+GRTG +TPV  LE
Sbjct: 235 DGVVVKLDDLALWRELGYTARAPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLE 294

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV I G+ ++  TLHNE +I+ L           D+R+GD VLV +AG VIP+V+ ++  
Sbjct: 295 PVFIEGSEVSRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKE 343

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R  + +P  +P  CP C   ++++           HRC   L C A++ E ++H+ SR 
Sbjct: 344 RRTGEEKPILWPENCPECGHALLKE--------GKVHRCPNPL-CPAKRFEAIRHYASRK 394

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I+GLG++ ++   +       +R  AD++ L++       ++      G+ S  NL 
Sbjct: 395 AMDIQGLGEKLIEKLLEK----GLVRDVADLYRLRKEDLLDLERM------GEKSAENLL 444

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
             I + +   LER +++LG+  VG  +AR+LA  +       +               L+
Sbjct: 445 RQIEESKGRGLERLLYALGLPGVGEVLARNLALRFGHMDRLLEA----------GLGDLL 494

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            V  VG++ A+AI+   ++P     V  
Sbjct: 495 EVEGVGELTARAILNTLKDPEFRDLVRR 522


>gi|260438468|ref|ZP_05792284.1| DNA ligase, NAD-dependent [Butyrivibrio crossotus DSM 2876]
 gi|292809057|gb|EFF68262.1| DNA ligase, NAD-dependent [Butyrivibrio crossotus DSM 2876]
          Length = 649

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 188/706 (26%), Positives = 318/706 (45%), Gaps = 66/706 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L   ++     YY  +  I+ + EYD L      + +             P +K+
Sbjct: 5   ERIKELIDILNEAGKVYYSGTDEIMSNFEYDRLYDELVELENE----TGIHMSGSPTSKV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E    L K  H  P LSL+K  +++ L +F                   L  K+DG  
Sbjct: 61  GYETLSELPKENHEKPMLSLDKTKSVDTLAEFA------------GVHKCLLSWKLDGLT 108

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y  G+ V A  RG+G+ GE ++   +    IP  L++     + +RGE  I+ +DF
Sbjct: 109 VVLTYNNGELVKAVTRGNGYVGEVITPNAKVFKNIP--LTIPYKGELILRGEAIITYSDF 166

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQYE 256
             +ND +I    K Y NPRN  SG +R+LN      R +      L K   I F     E
Sbjct: 167 NRINDSIIDDAEK-YKNPRNLCSGSVRQLNNEITAKRNVKLIAFALIKAEGINFHNSVEE 225

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
             + +   GF V    +  +    + S             +  DGLV   D+ +    LG
Sbjct: 226 QFEFLEKQGFEVVE-RKIVDGTT-VHSAVQYFSDKIKENDFPSDGLVMIYDDINYGLSLG 283

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PR  I+ K+ ++ A T L +I+    RTG++ PVA  +PV + G  +T A++HN 
Sbjct: 284 TTAKFPRNAIAFKWKDETALTTLREIEWSASRTGLINPVAIFDPVELEGTTVTRASVHNV 343

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             +K L            + +GD++ V +A  +IP++ + I +           P  CP+
Sbjct: 344 SIVKEL-----------KLGIGDKITVYKANMIIPQIAENITSSGTA-----VIPDKCPV 387

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C                +   C     CSA+ ++R +HF  R+A NIEG+  Q LD F +
Sbjct: 388 CGENT----QIIESAGASFLYCVNK-DCSAKHIKRFEHFCERNALNIEGISMQTLDKFIE 442

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DI+ L R +     +I ++ GFG  S  N+ +SIN  R   L   I+ 
Sbjct: 443 ----CGYIKEFEDIYHLDRYE----ERIVSMDGFGKKSYDNMIESINNSRTAMLANVIYG 494

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   AR + +Y+          +++    N     L+ +  +G+++A + V+++
Sbjct: 495 LGIDGIGLAGARLICRYFE---------DDVYKVINATKDELLLIDGIGEVLADSYVKYF 545

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGA 675
            + +N    E LLKE+   + + E+N +S +  K  V TG+L     R + +  + Q G 
Sbjct: 546 SDEKNRKEFELLLKEL--HLVKEERNTNSPVSGKTFVITGSLNHYANRDELKAVIEQNGG 603

Query: 676 VVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  +S KTD +I  D  +  SK +KA++LG+ +++E+ F+  L+
Sbjct: 604 KTTGSVSAKTDYLINNDLTSNSSKNKKAKELGIPVISEDDFIKFLE 649


>gi|167745884|ref|ZP_02418011.1| hypothetical protein ANACAC_00578 [Anaerostipes caccae DSM 14662]
 gi|167654748|gb|EDR98877.1| hypothetical protein ANACAC_00578 [Anaerostipes caccae DSM 14662]
          Length = 651

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 186/705 (26%), Positives = 325/705 (46%), Gaps = 65/705 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L   +S     YYQ ++ ++ + EYD L      +      +      + P   +G
Sbjct: 7   RMKELIHILSEASKAYYQENRELMSNFEYDKLYDELLELEKETDTVLA----DSPSIHVG 62

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            E+  SL K  HS P LSL+K   +  L +++                  L  K+DG  I
Sbjct: 63  YELLTSLEKEPHSSPMLSLDKTKEVGQLEEWL------------GDQKGLLSWKLDGLTI 110

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y++G  + A  RG+G  GE V+   +    +P+ ++      + +RGE  I  +DF 
Sbjct: 111 VLTYQEGVLLKAVTRGNGEVGEVVTNNAKVFVNLPKKIA--YKGTLVIRGEAVIHYSDFR 168

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQYEM 257
            +N+EM  +  + Y NPRN  SG +R+LN      R + F+   +    ++ F     E 
Sbjct: 169 RMNEEMEDLDSR-YKNPRNLCSGSVRQLNNEVTAKRNVRFYGFSVADVPDVDFHNSVEEK 227

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
               R LGF + + V        +                  DGLV   D+ +  + LG 
Sbjct: 228 FIWARSLGFDIVDYVAVTK--DTVAEEVERFSQAIENNDQPSDGLVLIYDDIAYGRSLGT 285

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+ PR  I+ K+A++ A T L +I+    RTG++ PVA  +PV + G+ ++ A+LHN  
Sbjct: 286 TAKFPRDSIAFKWADEIAETTLKEIEWSPSRTGLINPVAIFDPVELEGSTVSRASLHNIS 345

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            ++ L+           + VGD++ V +A  +IP++ +     R  DA     P  CP C
Sbjct: 346 VMEELE-----------LGVGDQISVYKANMIIPQLAEN--QTRSGDAP---IPDTCPAC 389

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
             +   +       LV    C     CSA++++   HFVSRDA N++GL +  L      
Sbjct: 390 GGKTEIEEENGIRTLV----CPNQF-CSAKKIKLFSHFVSRDAMNVDGLSEASLHKMMDK 444

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +    D+FTL+  +     +I  + GFG+ S  NL D+I + + ++L +F++SL
Sbjct: 445 ----GLLNELYDLFTLKEHK----EEIIEMEGFGEKSFHNLADAIERAKKVTLPKFLYSL 496

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG   A+ + +Y+          +++ A  N +      +  +G II +A+  +++
Sbjct: 497 GIANVGLSNAKLICRYFE---------DDLDAIRNAEAEDFTAIDGIGPIIGEAVSGYFR 547

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAV 676
              N   V+ LL+ V     R  +     ++ K  V TG+L+    R + QE +  LG  
Sbjct: 548 LENNKQTVDRLLQYVEIE-KRQTEETEKLLDGKTFVITGSLEHYENRKQLQEQIEILGGK 606

Query: 677 VSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  +++KTD +I  +     SK +KA +L + I+ EE+F+ +++
Sbjct: 607 ATGSVTKKTDYLINNNKNSASSKNKKAMELSIPIITEEEFMDMIK 651


>gi|229825369|ref|ZP_04451438.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC
           49176]
 gi|229790373|gb|EEP26487.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC
           49176]
          Length = 664

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 202/724 (27%), Positives = 337/724 (46%), Gaps = 71/724 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I   ++ +  L   +      YY  S  I+ ++EYD L    +A+ +    +      
Sbjct: 1   MDINSKKQRMKELIDVLDKAAKAYYAESTEIMSNAEYDKLYDELEALENETGIVLAG--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+G E+  SL K  H  P LSL K  ++ +L  F+                  L 
Sbjct: 58  -SLTKKVGYEVLSSLPKKAHKEPRLSLSKTKDVGELASFL------------GDKEGILM 104

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I + YE G+ V A  RG+G  GE V+   R    IP  L +     + VRGE 
Sbjct: 105 WKLDGLTIVLTYENGELVEALTRGNGEIGEVVTENARFFENIP--LVIPYKGSLMVRGEA 162

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I  +DF  +N+E+  V  K Y NPRN  SG +R+L+      R +NF V+   +  E F
Sbjct: 163 IIKYSDFNRINEEITDVAEK-YKNPRNLCSGSVRQLSTEVTAKRNVNFIVYEDLEGGEKF 221

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K + E L  +  LGF V +          +     E ++   T     DGLV + ++ +
Sbjct: 222 -KTREEELNYLESLGFTVVDHPLV--NRDNLEKEVREYENRIKTSDLPSDGLVLQFNDIA 278

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
               LG  ++ PR  I+ K+ ++ A T L +I+    RTG++ PVA  + V + G  +T 
Sbjct: 279 YGNSLGRTSKFPRHSIAFKWKDETAETTLREIEWSASRTGLINPVAIFDAVELEGTTVTR 338

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN   ++ L            + VGDR+ V +A  +IP++++ +       +     
Sbjct: 339 ASVHNVSIMRSL-----------KLGVGDRIKVYKANMIIPQILENLTE-----SNAEEV 382

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C  +       K  + V    CT    C A++L+ L HFVSRDA NI GL +  
Sbjct: 383 PTVCPVCGGKTE----LKDEEGVQTLYCTNP-DCMAKRLKLLTHFVSRDAMNIAGLSEMT 437

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+ F         I   +D+F L   +     KI  + GFG+ S  NL +S++K R  + 
Sbjct: 438 LEKFVAENM----IHELSDVFKLANHK----EKIVTMEGFGERSYNNLIESLDKARETTA 489

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++SLGI ++G   A+ + +Y+ +      + + II    ++     ++  +G+++A+
Sbjct: 490 VRILYSLGIANIGLATAKLICRYFNN------DFDKIIKAKEEELT---QIDGIGEVMAK 540

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH-------EKNVSSEIENKKLVFTGTLQKIQ- 662
              E++    NI  +E LL EV              +  V++ I     V TG ++K + 
Sbjct: 541 VFAEYFNKDENIKTLEHLLAEVHIEKSAENDQNTEGDDEVNNAIAGLTFVITGDVEKFKN 600

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R +  E++   G  V+  ++ KT+ +I  D  +   K +KA++LGVKI++E +FL L+  
Sbjct: 601 RRELSEFIESKGGKVTGSVTGKTNYLINNDVTSNSGKNKKAKELGVKIISENEFLELVGG 660

Query: 721 YNTT 724
            N  
Sbjct: 661 NNAN 664


>gi|4235378|gb|AAD13192.1| NAD-dependent DNA ligase [Thermus filiformis]
          Length = 537

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 191/583 (32%), Positives = 306/583 (52%), Gaps = 49/583 (8%)

Query: 61  AFPDLARSEDPNGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
            FP+    + P+ P  ++G      +   V H     SL+  +  E++  F  R+ R   
Sbjct: 1   RFPEF---KSPDSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALG 57

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
           +K      +T+E K+DG  + + YE+G  V+ A RGDG  GE+V+  +  IPTIPR L  
Sbjct: 58  RK--RPFLYTVEHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLK- 114

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
            +P+ +EVRGEVY+    FL LN+E+   G K + NPRNAA+G LR+ +P     R L  
Sbjct: 115 GVPDRLEVRGEVYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRA 174

Query: 239 FVHGLGKT-SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
             + LG    E   K QYE+L  ++  GFPV +G  +A    G+   Y    + R  LP+
Sbjct: 175 TFYALGLGLEESGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPF 234

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           + DG+V K+D+ +L ++LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  
Sbjct: 235 EADGVVVKLDDLALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGV 294

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV I G+ ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++
Sbjct: 295 LEPVFIEGSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVL 343

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R  + +P  +P  CP C  R+V++           HRC   L C A++ E ++H+ S
Sbjct: 344 KERRTGEERPIRWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYAS 394

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A +IEGLG++ ++   +       +R  AD++ L++       ++      G+ S  N
Sbjct: 395 RKAMDIEGLGEKLIERLLEK----GLVRDVADLYHLRKEDLLGLERM------GEKSAQN 444

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L   I + ++  LER +++LG+  VG  +AR+LA+ + +     +     +    +    
Sbjct: 445 LLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELLEVEEVGE- 503

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                    + A+AI+E  ++P     V  L +       + E
Sbjct: 504 ---------LTARAILETLKDPAFRDLVRRLKEAGVSMESKEE 537


>gi|160940658|ref|ZP_02088001.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436393|gb|EDP14160.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC
           BAA-613]
          Length = 699

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 186/720 (25%), Positives = 325/720 (45%), Gaps = 61/720 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E LS E     +  L ++++ +   YY  + P + D+ YD L    DA+      +    
Sbjct: 31  EHLSQEAI--RIHHLVKQLNQYRHEYYNMNAPSVSDAVYDCLFDELDALEKRTGIILS-- 86

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             N P   +G +    L KV H IP LSL+K   I ++  F+ +                
Sbjct: 87  --NSPTQTVGYQAVSQLDKVHHPIPLLSLDKTKQITEIHDFMKKQKSLL----------- 133

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
              K+DG  I + YE G+ + A+ RGDG  GE V+    A   IP  LS+   + + + G
Sbjct: 134 -MLKLDGLTIKLTYENGRLIEASTRGDGDEGEIVTHNASAFRNIP--LSIPYQKRLVISG 190

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT-- 246
           E +I  +DF  L + ++     PY N RN A+G  R L+      R ++F+   + +   
Sbjct: 191 EAFIHIHDFERLQNTLLDSNGNPYRNARNLAAGSARCLDANICKERSVSFYAFHVLEGLD 250

Query: 247 -SEIFAKGQYEMLQKMRCLGFPVNNGVRQAN--TFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            S   +K +   L  +  LGF +   +  ++  +   +      ++ + S L   IDGLV
Sbjct: 251 ESSELSKSREARLTALHPLGFDICPFLVLSSEASLETLNEAMATLRDLASELDIPIDGLV 310

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            + D+       G   R  +   + KF +    T    I+ Q GRTG + PVA  +P+ I
Sbjct: 311 LRYDDLPYSVACGRTGRFYKDGKAFKFEDDTFKTIFRSIEWQTGRTGEIAPVALFDPIEI 370

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ ++ A+LHN  +I+ L+           +  G R+LV +   +IP + + +    + 
Sbjct: 371 DGSTVSRASLHNLTFIQDLE-----------LYPGCRILVSKRNMIIPHIEENLDRGHYQ 419

Query: 424 DAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           D      P  CP C S   +   +  + ++V    C     CS Q L+R  HF  + A N
Sbjct: 420 DM----TPRTCPCCGSPTRIYSRSSGSERIVQTLHCDNP-NCSQQILQRFVHFCEKKAMN 474

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I G+ +  L  F         ++   DI+ L R     + +I ++ GFG  S   L++SI
Sbjct: 475 IIGISEATLKQFID----LGFLKCFQDIYHLDRF----SDQIADMDGFGKKSYERLWNSI 526

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N+ RN +  R++ ++ I  +G   +R L +Y+    N  +    + A +  D+     + 
Sbjct: 527 NESRNTTFVRYLVAMDIPMIGRTASRKLEQYFH--GNLLE--LELAAMSRFDFTC---LE 579

Query: 603 LVGDIIAQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
             G+ ++  I+E++ +  N+     ++  +           +  ++      +V TG L+
Sbjct: 580 DFGETMSSNIIEWFHDRENLTLWRNLQKEMHFKEREETIMTETKNNPFAGCTIVATGKLE 639

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R      +  LGA   + +++KTD +I G+  GSKL KAQQLGVK+++E++FL ++ 
Sbjct: 640 NFTRDSINSKIISLGATAGSSVTKKTDYLICGEKAGSKLAKAQQLGVKVLSEQEFLNMIA 699


>gi|311900456|dbj|BAJ32864.1| putative DNA ligase [Kitasatospora setae KM-6054]
          Length = 718

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 200/732 (27%), Positives = 318/732 (43%), Gaps = 97/732 (13%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY      + D EYDAL R   A   A P+   +   + P  K+ G        V HS+P
Sbjct: 34  YYGDGTTTLGDDEYDALVRAIAAYEEAHPEELLA---DSPTGKVAGGAAEG--DVPHSVP 88

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ +++ E+L  +   + R   +       + +EPK+DG  I  RYE G       R
Sbjct: 89  MLSLDNVFSGEELADWAASLERRLGRAPAG---WCVEPKLDGLAIAARYEGGALRRVLTR 145

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           G+G +GED++     +  +P VL+   P  +E+RGEV ++   F   N+   A G  P+A
Sbjct: 146 GNGLAGEDITHTAGDVLGLPAVLAE--PVDVELRGEVLLTHAQFERANEIRTAHGAVPFA 203

Query: 215 NPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK------------------GQYE 256
           N RN A+G LR  +       L FF +      E   +                      
Sbjct: 204 NARNGAAGTLRAKD-RPYRIELTFFAYDAVGLDENPGEKPGETPDETPGQAPSRALDHSA 262

Query: 257 MLQKMRCLGFPVNNGVR----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           +L+++  LG            +  +   +     ++ ++R  LP+ IDG+V K D  + Q
Sbjct: 263 LLERLAALGANTAASTAAAPLRCESIEEVQRRIEQITALRPQLPFGIDGVVVKADAAADQ 322

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++ G  +R+PRW ++ K A +   TRLL+++  +GRTGI+ P A LEPV I G  +T AT
Sbjct: 323 ERAGSGSRAPRWAVARKLAAEHKVTRLLEVEWAVGRTGIIAPRAVLEPVVIDGVTVTYAT 382

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+            R + +GDRV V RAG+VIP+V   +V ER  + +P  FP+
Sbjct: 383 LHNPADIER-----------RGLMLGDRVFVYRAGDVIPRVEAPLVEERTGEERPIVFPA 431

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C                   RC  G  C  Q +  + +   RD  +IEGLG  +  
Sbjct: 432 ACPRCG--------EAIDSSEQRWRCVRGRNC--QAVASIIYAAGRDQLDIEGLGSTRAV 481

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  +R  AD+FTL R Q     ++      G+ S  NL  +I   R   L R
Sbjct: 482 QLVE----AGLVRDLADVFTLTREQLLGLERM------GETSTDNLLAAIATARTRPLGR 531

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +LG+R  G  ++R +A ++ S           +A           V  +G   A+ +
Sbjct: 532 VLCALGVRGTGRSMSRRIAAHFGSMAAIRAADAETLAA----------VEGIGPEKARLV 581

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-------------------SEIENKKLV 653
           V        +    A L   +                                +  + +V
Sbjct: 582 VSELAELTTLLDRLAELGVGTQVTAPQRPTAPKPAAEETGEAAEDADAPAAGPLSGEAVV 641

Query: 654 FTGT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
            TG+    L  + R++  E V + G   S+ +S++T +++ G+  GSK  KA++LG++I+
Sbjct: 642 VTGSMTGALAALTRNEMNELVERAGGKASSAVSKRTTLLVAGEKAGSKRAKAEELGIRIL 701

Query: 710 NEEQFLFLLQQY 721
             E F  LL  +
Sbjct: 702 TPEDFATLLADH 713


>gi|166215830|sp|Q4A899|DNLJ_MYCH7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|144575353|gb|AAZ53640.2| DNA ligase [Mycoplasma hyopneumoniae 7448]
          Length = 692

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 213/737 (28%), Positives = 354/737 (48%), Gaps = 78/737 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74
           Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  P
Sbjct: 6   QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 65

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+G ++     KV HS P LSL K ++ E+L K+  +     +     ++ F +EPKI
Sbjct: 66  SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKAREILK-----TVTFFVEPKI 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEIIEVRGEVY 192
           DG  +++ Y+ G  + A  RGDG  GE+V      I    IP+ +  N  E +EVRGE+Y
Sbjct: 121 DGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKI--NYLEDLEVRGEIY 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRR-------LNPTDIT--------RYLN 237
           I  + F +L  E      K + NPRNAASGILRR       ++   I         RYL 
Sbjct: 179 IDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLK 233

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F + L    +     Q++ +  +R LGF VN   ++ +    + ++ + +K  R  L Y
Sbjct: 234 SFFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNY 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T  A+
Sbjct: 294 NIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAK 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++  +
Sbjct: 354 IEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSV 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            N        FS    CP C S +V        +      C     C    L+++ HF S
Sbjct: 403 HN---YPKTNFSIVKNCPKCNSELV------NSESGLDQFCQNQF-CPEIILQKIVHFCS 452

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI---------- 527
           ++A NIE L +++++ F +       I    DIF L+ + +    ++ N           
Sbjct: 453 KNALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNAS 508

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                 S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +         N+
Sbjct: 509 QSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLDFNL 568

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           + + +D           G +I +++++++ N +N   +  L             N S+  
Sbjct: 569 LKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSN-- 616

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
                  +G L K  R +    + + GA     +++KTD +++G + GSK+EKA++ G+K
Sbjct: 617 SWASFAISGKLSKP-RDEYVRIIEESGASFHESVTKKTDFLLLGQSAGSKIEKAKKAGIK 675

Query: 708 IMNEEQFLFLLQQYNTT 724
           I+NE QF  L++    T
Sbjct: 676 IINEVQFFDLIKNSKKT 692


>gi|72080605|ref|YP_287663.1| DNA ligase [Mycoplasma hyopneumoniae 7448]
          Length = 693

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 213/737 (28%), Positives = 354/737 (48%), Gaps = 78/737 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74
           Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  P
Sbjct: 7   QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 66

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+G ++     KV HS P LSL K ++ E+L K+  +     +     ++ F +EPKI
Sbjct: 67  SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKAREILK-----TVTFFVEPKI 121

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEIIEVRGEVY 192
           DG  +++ Y+ G  + A  RGDG  GE+V      I    IP+ +  N  E +EVRGE+Y
Sbjct: 122 DGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKI--NYLEDLEVRGEIY 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRR-------LNPTDIT--------RYLN 237
           I  + F +L  E      K + NPRNAASGILRR       ++   I         RYL 
Sbjct: 180 IDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLK 234

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F + L    +     Q++ +  +R LGF VN   ++ +    + ++ + +K  R  L Y
Sbjct: 235 SFFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNY 294

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T  A+
Sbjct: 295 NIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAK 354

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++  +
Sbjct: 355 IEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSV 403

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            N        FS    CP C S +V        +      C     C    L+++ HF S
Sbjct: 404 HN---YPKTNFSIVKNCPKCNSELV------NSESGLDQFCQNQF-CPEIILQKIVHFCS 453

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI---------- 527
           ++A NIE L +++++ F +       I    DIF L+ + +    ++ N           
Sbjct: 454 KNALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNAS 509

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                 S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +         N+
Sbjct: 510 QSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLDFNL 569

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           + + +D           G +I +++++++ N +N   +  L             N S+  
Sbjct: 570 LKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSN-- 617

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
                  +G L K  R +    + + GA     +++KTD +++G + GSK+EKA++ G+K
Sbjct: 618 SWASFAISGKLSKP-RDEYVRIIEESGASFHESVTKKTDFLLLGQSAGSKIEKAKKAGIK 676

Query: 708 IMNEEQFLFLLQQYNTT 724
           I+NE QF  L++    T
Sbjct: 677 IINEVQFFDLIKNSKKT 693


>gi|268610246|ref|ZP_06143973.1| DNA ligase, NAD-dependent [Ruminococcus flavefaciens FD-1]
          Length = 685

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 179/717 (24%), Positives = 319/717 (44%), Gaps = 66/717 (9%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P + +++++    +  L + ++   D YY     I+ D EYD L    + +      
Sbjct: 28  KATPPKEVNMDKI-NRMKELNELLAKAADSYYNTGVEIMSDHEYDELYDELEKLEKETGV 86

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           +           ++G E+  SL KV H+   LSL+K  +I++L +++     F       
Sbjct: 87  ILNG----SRTQQVGFEVASSLTKVKHTSRMLSLDKTKSIDELTEWLGGHEGFL------ 136

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                   K+DG  + + ++ G    A  RG+G +GED++   R I  IP  +       
Sbjct: 137 ------SWKLDGLTLVLTFDNGTLTQAVTRGNGETGEDITMNARHIIGIPAKIPFE--GH 188

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           + VRGE  +   DF  +N   +      Y NPRN   G +R L+      R +NFF   L
Sbjct: 189 LVVRGESLMKYKDFERVNS--LIEDGSKYKNPRNLCVGTVRNLDSKVTAERNINFFAFNL 246

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                  +    E +Q +  LGF    GV+  ++   +     E +       +  DGLV
Sbjct: 247 VSADGYESNSFAERIQWLNSLGFQTVYGVKVDSSV--LAEKVAEFEKDIVNNEFPSDGLV 304

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
             +D+ +  + LGE + +PR  ++ K+ ++ A T L +I+    RTG+L PVA  +PV +
Sbjct: 305 LMLDDVAYGRSLGETSHAPRNGMAFKWRDETADTTLREIEWSASRTGLLNPVAIFDPVEL 364

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A++HN   +K L            + +GD + + +A  +IP+V++        
Sbjct: 365 EGTTVSRASVHNVSIVKQL-----------KLGIGDTLSIYKANMIIPQVLE-----NKT 408

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            +   + P  CPIC     +     +   V    CT    C A+ + R +HFV RDA NI
Sbjct: 409 GSASAAIPEVCPICG---EKTEIKTSDDDVETLFCTNK-ECPAKHIGRFEHFVQRDAMNI 464

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GL    ++ F         ++  +D + L R +     KI  + GFG+ S   + +++ 
Sbjct: 465 VGLSTATIETFVSE----GFVKKYSDFYHLDRFR----EKIVTMEGFGERSYQKMQEAVE 516

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R+  + R ++++GI ++G   +R +   Y         I  + A        L  +  
Sbjct: 517 ASRHTEMSRILYAVGIPNIGRAASRLICAEYPDV----NAIEKLTA------EELTAIDG 566

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ- 662
           +G+++A   V+F+ N  N+     LL E+  +      +  S I  K  V TG++   + 
Sbjct: 567 IGEVLANDYVKFFANEDNLTEYHELLTELDIA-EPEAVSEDSPIAGKTFVITGSVNIWKN 625

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
           R++ + Y+  +G  VS  +S KT  +I  D  +  +K + A+ L V I+ EE+F  L
Sbjct: 626 RNELKAYIESMGGKVSGSVSSKTSYLINNDSQSNSTKNKTAKSLNVPIITEEEFREL 682


>gi|291460667|ref|ZP_06600057.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291416626|gb|EFE90345.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 664

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 175/712 (24%), Positives = 313/712 (43%), Gaps = 69/712 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L   ++     YYQ    I+ + EYD L      +      +  +     P  ++
Sbjct: 4   ERMKELIGILNRASKAYYQDGDEIMSNLEYDKLYDELQGLERETGIVLSA----SPTERV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E+   L KV H  P LSL+K  + E L +++                  L  K+DG  
Sbjct: 60  GYELLSELPKVRHLSPMLSLDKTKSPEALAEWL------------GDREGLLSWKLDGLT 107

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + YE G+ V    RG+G  GE V+  +R    +P  +       + +RGE  I  +DF
Sbjct: 108 IVLNYEGGELVRGVTRGNGEIGELVTQNVRVFDNVPTRI--PFSGSLVLRGEALIRYSDF 165

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE------IFA 251
             +ND ++      Y NPRN  +G +R+L+P     R++      L    E       F 
Sbjct: 166 ERINDGILDA-EARYKNPRNLCAGSVRQLDPGITKERHVKLLAFSLVSAKEGDGSPVDFQ 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             +    + +R  GF V            +++             +  DGLV  +D+ + 
Sbjct: 225 NSRRRQFEFLREQGFSVVEYRLVRGG--EVLAAVKAFSERVKDNDFPSDGLVLLLDDIAY 282

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR  ++ K+ +++A T L +++    RTG++ PVA  +PV + G  ++ A
Sbjct: 283 GESLGRTAKFPRNALAFKWRDEEAETVLREVEWSPSRTGLINPVAIFDPVELEGTTVSRA 342

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN  + + L            + +GDRV V +A  +IP++ +         +   S P
Sbjct: 343 SLHNLSFCEELS-----------LGLGDRVSVYKANMIIPQLSENFTK-----SGTLSPP 386

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C      +   +  K      C     C A+++++   FVSRDA NIEGL +  L
Sbjct: 387 SRCPACG----EETEVRKDKGAKFLYCKNP-DCPAKRIKKFSLFVSRDALNIEGLSEMTL 441

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F         I+   D++ L+R ++       ++ GFG+ S   L +++ K R+  L 
Sbjct: 442 EKFI----GHGFIKSYRDLYHLERHREEIL----SMEGFGERSYERLMEAVEKSRDTLLY 493

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             I+ LGI  +G   AR L +++            +      +   L+ V  +G+++A+ 
Sbjct: 494 HLIYGLGIDGIGLANARLLCRHFH---------QELSLIRGAEKEELLEVDGIGEVLAEK 544

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
           +  ++ + + +  +  LL E+        +     +  K +V TG L     R + +E +
Sbjct: 545 LYAYFHSEKQLSELHELLPELRIGREEEREEEGGALRGKTIVITGNLTHFENRKELEEEI 604

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGS--KLEKAQQLGVKIMNEEQFLFLLQQ 720
            + G   S  +S+KT  ++  D+     K +KA++LG+ I+ EE+FL +L +
Sbjct: 605 LRAGGKCSGSVSKKTSYLVNNDSSSQSGKNKKAKELGIPIVTEEEFLKILGE 656


>gi|315452902|ref|YP_004073172.1| DNA ligase [Helicobacter felis ATCC 49179]
 gi|315131954|emb|CBY82582.1| DNA ligase [Helicobacter felis ATCC 49179]
          Length = 733

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 210/741 (28%), Positives = 345/741 (46%), Gaps = 93/741 (12%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
            +   YY    P++ D EYD L ++     HA P+         P  ++G  +   L K 
Sbjct: 17  QYAHHYYVLDDPLVSDFEYDTLYQQIQDYEHAHPEQILEH---SPTQRVGDALLSYLPKH 73

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
           TH     SL+ ++++E L+ +I RI++ +         FT  PK+DG  + + Y++GK V
Sbjct: 74  THLERMWSLDNVFDLEGLQTWIARIFKVYPH-----ARFTCSPKLDGVSLNLFYDQGKLV 128

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
            A  RG+G  GE V+   + IP+IP  ++   P  +E+RGEV I   DF  +N E   + 
Sbjct: 129 SATTRGNGIEGELVTHIAKTIPSIPLRIAPTEP--LEIRGEVTIENADFEKINAERAKLN 186

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
           +  +ANPRNAA+G LR+L+P     R L+F   GLG+ +      +  M   +     P+
Sbjct: 187 QPLFANPRNAAAGSLRQLDPRISAKRKLSFTPWGLGRCAPTLPSFKAMMDCLLENHFLPM 246

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
                   +   I   Y E+ + R      +DG+V  VD+F++QK+LG   ++PR+ I++
Sbjct: 247 P--FSLCGSVEEIQQVYTELHAQRERAKVGMDGMVVVVDDFAMQKELGFTLKAPRFAIAY 304

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           KF   +  TRLL++  Q+GR+G +TPVARLEPVN+ GA I  ATL++   I+        
Sbjct: 305 KFPALEKHTRLLEVIAQVGRSGAITPVARLEPVNLDGAQIARATLNSYTDIQ-------- 356

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
               +D+++ D V+V R+G+VIP+V+  +V+ R    +P   P+ CP C+S + +     
Sbjct: 357 ---QKDLQLNDMVVVLRSGDVIPQVIKPLVHLRDGSQKPIIPPNHCPSCESLLEQQPLNI 413

Query: 449 TGKLVA-----------------------------------------AHRC--------- 458
             +                                             +RC         
Sbjct: 414 CPQCHLPLLLKDKPNFCPSCARFAPHAHLKNARSCPSCAQALEYKPFCYRCNLDLSAHAR 473

Query: 459 ---TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR 515
                  +CSA+    L +F S+    I GLG + +    +++     I   +D++TL+ 
Sbjct: 474 ALCCVNPSCSAKLHASLVYFASKQGLEIAGLGDKVVKQLLEAK----LISQISDLYTLR- 528

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
                   +  + G+      NL D+I K ++  L RFI +LGI ++G   ++ LA    
Sbjct: 529 -----LEDLLQLEGWKHKRAQNLLDAIAKTKHAPLWRFINALGIENIGKGASKKLAGILG 583

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGD-IIAQAIVEFYQNPRNICAVEALLKEVSP 634
             + F Q+ +              R    GD   A+A  EF Q   +   +  L++ + P
Sbjct: 584 -LEVFDQDYSG-YQRAFKKIFQGAREDQKGDYKSARAFWEFVQT--HRAKIAHLMRLIEP 639

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
           +I           + K +V TG+   I R   ++Y+  LGA V   LS KTD+++ GD P
Sbjct: 640 TIAEKRAPQCGFFQGKVVVITGSFS-IPRDALRQYLEDLGAEVKGHLSAKTDLLLCGDKP 698

Query: 695 GSKLEKAQQLGVKIMNEEQFL 715
           GSKLE+A++  + IM  +   
Sbjct: 699 GSKLEEAKKHNISIMGIDALR 719


>gi|303281478|ref|XP_003060031.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458686|gb|EEH55983.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 887

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/823 (29%), Positives = 375/823 (45%), Gaps = 133/823 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           AL   +    ++SL + IS  D+ Y+  + P+  D+ YDA + R +A+    P + R   
Sbjct: 76  ALPASEVPAAMASLAEFISRADEAYHNDADPVASDAAYDATRLRLEALEALHPAMIRE-- 133

Query: 71  PNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD----- 123
            + P+  +G +     +L +V H++P  SL   ++ +D+R F+ R+ R     +      
Sbjct: 134 -DSPIGAVGAKPAAWSALPQVEHAVPMRSLGNCFDDDDVRAFVARVTRALGPPERFDDDA 192

Query: 124 -NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--- 179
              + F  EPKIDG   ++RY  G  V AA RGDG  GEDV+  I  IP  P  L+    
Sbjct: 193 RAPLRFCAEPKIDGASASLRYVDGVLVVAASRGDGEVGEDVTRQIGGIPGAPTTLTGRAG 252

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-----TDITR 234
           + P  +E+RGEV+I+ +DF ALN    A G   + + RNAA+G +RRL P      D  R
Sbjct: 253 DWPATLEIRGEVFIADDDFAALNARREARGMPTFKSARNAAAGAMRRLEPPSRDGADAGR 312

Query: 235 YLNFFVHGLGK----TSEIFAKGQYEMLQKMRCLG-FPVNNGVRQANTFHGIVS-YYNEM 288
           YL F  +G G+    T  +    Q   L  +  LG  PV       +    +V+  +  +
Sbjct: 313 YLRFLAYGWGEVKPQTELLPWSSQRAFLASLPALGLSPVPTLGPITDDVAALVAGSHAAL 372

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
           +  R++L Y +DG+VYKVD+ + Q+ LG  +R+PRW  +HKFA + A T L  +D+Q+GR
Sbjct: 373 ERDRASLGYRVDGVVYKVDDVASQRILGADSRAPRWATAHKFAAETAVTTLRAVDVQVGR 432

Query: 349 TGILTPVARLE-PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           TG LTPVA L+ PV +GGA +T ATLHN + +             + +R+G RV+V+RAG
Sbjct: 433 TGALTPVATLDPPVALGGATVTRATLHNFEDVAR-----------KGLRLGARVVVERAG 481

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL--------------- 452
           +VIP+VV ++      +    + P+ CP C S V +     + K                
Sbjct: 482 DVIPRVVRVVAE-GEEEGAVVATPTRCPACGSAVSKTPLAASVKCPKKRLSSPYESGDAA 540

Query: 453 ------------------------VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                                    A  RCTGG  C AQ LER+ HF SRDA ++ GL +
Sbjct: 541 SSSFAAVDDESEDATSSPSSSSSSAAVLRCTGGWRCPAQALERVAHFASRDALDVRGLAR 600

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE----------------------- 525
           +Q+         A  I  PAD+FT++ R +      +                       
Sbjct: 601 KQIADLLD----AGVIASPADLFTMRARFEHLGVDPDASGEDDDARGDGGGVAVPEFWTY 656

Query: 526 ---NILGFGDVSVTNLYDSI-NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                 G    S   L+D++      + L RFI+SLGI  VG   A+ L++ Y +   F 
Sbjct: 657 ASGKDEGKLKRSAKKLFDALDETAAGVPLHRFIYSLGIPQVGLTTAKLLSRKYRTLDAFR 716

Query: 582 QEINNIIAHNNDDWL---------SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
                  A                ++  +  +G ++A  I EF+    N+  V+ +L+  
Sbjct: 717 DAAEEAAAAKAAASADAAASTEAPAMTDIDGIGPVVAATIGEFWSERANVNVVDDMLRNG 776

Query: 633 SP---------------SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                            +      + +  +    +V TG +  + R +A + V   G   
Sbjct: 777 VVVSDDASPPDASDASDASNAAAASATGPLTGYAVVVTGAVPGMTREEAFDAVAAAGGSP 836

Query: 678 SAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
              +S KT +++VG+  G  K E A+  GV +++ E FL +L 
Sbjct: 837 QKAVSGKTHVLVVGEGAGRRKAEAAEARGVAVIDAEAFLRVLA 879


>gi|225389801|ref|ZP_03759525.1| hypothetical protein CLOSTASPAR_03549 [Clostridium asparagiforme
           DSM 15981]
 gi|225044136|gb|EEG54382.1| hypothetical protein CLOSTASPAR_03549 [Clostridium asparagiforme
           DSM 15981]
          Length = 673

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 174/717 (24%), Positives = 302/717 (42%), Gaps = 59/717 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E  RK+   L   ++ +   YY  + P I D+ YD L      +          +  
Sbjct: 1   MNQELIRKQ-QDLTARLNRYRHEYYNLNAPSISDAVYDRLFEELQDLERQ----TGIQMA 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P + +G      L K  H IP LSL+K  NI ++ +F+                    
Sbjct: 56  NSPTSTVGYPAISKLEKTNHPIPLLSLDKEKNIVEVCRFM------------GEHQVMFM 103

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I + YE G+ + AA RGDG  GE V+   RAI  IP  +     + + + GE 
Sbjct: 104 LKLDGLTIKLTYEGGELLEAATRGDGEVGEIVTHNTRAIGGIPAHIR--YEDRLVITGEA 161

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           +I  +DF  L   ++    + Y N RN A+G +R L+      R L F    + +  E  
Sbjct: 162 FIRPSDFEQLKASLVDNNGETYKNGRNLAAGSVRLLDAKTCMERRLMFMPFTVLEGFENL 221

Query: 251 AKGQYEMLQKMRCLGFPVNNG--VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            + + E L+++  LGF        ++  T         +++         IDG+V   ++
Sbjct: 222 PR-KSERLKELSALGFTPCKYLVTKRTLTQAEAEDGIKQLQQYARDKDIPIDGIVVTYND 280

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +  K  G      +  ++ KF +    T+L  I+   GRTG + PVA   PV I G  +
Sbjct: 281 VAFAKSCGRTGHHYKDGLAFKFEDDLFETKLQMIEWTPGRTGEIAPVAVFAPVEIDGCEV 340

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN  +I+ L+           +  G+R+LV +   +IP V D +   R       
Sbjct: 341 SRASLHNLSFIEDLE-----------LMPGNRILVSKRNLIIPHVEDNLD--RGGFVLES 387

Query: 429 SFPSFCPICQSRV----VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           ++P  CP C         R  N    +            C  ++L++  HFV + A NIE
Sbjct: 388 AYPHRCPCCGEPTRIHETRGRNENGEERTIKTLFCDNAGCETRKLKQFVHFVGKKAMNIE 447

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GL +  L+           I    DI+ L + +     ++  + GFG+ S   L+ +I +
Sbjct: 448 GLSEATLEKLIGR----GWIHSYLDIYRLDQHK----DELVRMDGFGERSWQRLWSAIQQ 499

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            RN + ER++ ++ I  +G   +  L + +         ++         +    ++P  
Sbjct: 500 SRNTTFERYVIAMDIPMIGNTASGVLCQVF------HGNLDEFRDAVYAGY-DFRQLPDF 552

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQK 660
           GD +   I E++    N C  E L   +                +    K +V TG ++ 
Sbjct: 553 GDTLHNNIHEWFSKEENFCIWEELQMMMKIQKPVQPVAENNTQDNPFAGKTIVVTGKVEP 612

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             R +    +  LGA+  + ++RKT  ++ G+  GSKL KA++LG+ ++  ++F  +
Sbjct: 613 YTRDEMNSLIASLGAIAGSSVTRKTHYLVCGEKAGSKLSKARELGIPVLEPQEFFRM 669


>gi|297196946|ref|ZP_06914343.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
 gi|297146537|gb|EDY59948.2| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
          Length = 712

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 200/724 (27%), Positives = 324/724 (44%), Gaps = 82/724 (11%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
                YY+     + D  YD L R   A     PD      PN P  K+ G   +    V
Sbjct: 41  KASAAYYEGGTSALDDDAYDRLVRGIAAWETDHPDQVL---PNSPTGKVAGGAVVG--DV 95

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H++  LSL+ +++ ED   +   + R   +       F++EPK+DG  I  RY +G+  
Sbjct: 96  PHTVAMLSLDNVFSPEDFTAWTVSLAR---RIGHEVRRFSVEPKLDGLAIAARYTQGRLA 152

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
               RGDG +GEDVS  I  +  +P  L  + P  +EVRGEV ++   F   N+   A G
Sbjct: 153 RLITRGDGIAGEDVSHAIGTLEGLPEKL--DQPVTVEVRGEVLMTTAQFEHANEVRTAHG 210

Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK--------GQYEMLQKM 261
            +P+AN R A++G LR  +    T  + FF + L    +  +            +++   
Sbjct: 211 GQPFANARGASAGTLRAKD-RAYTVPMTFFGYSLLSLPDADSALTERLNGLAHSDLMDLT 269

Query: 262 RCLGFPVNNGVR----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
             +G             A T   ++    E+ ++R+ LP+ IDG+V K D  + Q+  G 
Sbjct: 270 AQMGVNTTATTAAPGIIATTVEEVLDRVREIAALRAELPFGIDGIVIKADLAADQQAAGS 329

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW I++K    +  TRLLD++  +GRTGI+ P   LEPV I GA IT ATLHN  
Sbjct: 330 GSRAPRWAIAYKLPAVEKITRLLDVEWNVGRTGIVAPRGVLEPVEIDGATITYATLHNPA 389

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I             R +R+GD V+V RAG+VIP++   + + R  D QP +FP  CP C
Sbjct: 390 DIAR-----------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGDEQPIAFPEVCPRC 438

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +               RC  G  C    +  L +   RD  +IEGLG  ++    + 
Sbjct: 439 GSAI--------DTSQERWRCEQGRNC--HLVASLSYAAGRDQLDIEGLGVTRIVQLVE- 487

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   AD+FTL R Q  +  ++         S  NL  +I   +   L R + +L
Sbjct: 488 ---AGLVTDLADLFTLTRDQLLALERMGA------TSTDNLLTAIAAAKGQPLSRVLCAL 538

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+R  G  ++R +A+++ +                 D  ++ +V  +G   A +IV    
Sbjct: 539 GVRGTGRSMSRRIARHFATMDTIRAA----------DADAMQQVEGIGTEKAPSIVAELA 588

Query: 618 NPRNI--CAVEALLKEVSPSIGRHE------------KNVSSEIENKKLVF----TGTLQ 659
               +    + A +    P +                K     +    +V     TG L+
Sbjct: 589 ELAPLIDKLIAAGVNMTEPGVTPPPAAGDTDAAAGGTKAAGGPLAGMTVVVTGAMTGALE 648

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           K+ R++  E + + G   S+ +S+KT +++ G+  GSK  KA+ LG+++   ++F  L+ 
Sbjct: 649 KLSRNQMNELIERAGGRSSSNVSKKTTLVVAGEGAGSKRAKAEDLGIRLATPDEFAALVA 708

Query: 720 QYNT 723
            + +
Sbjct: 709 DFTS 712


>gi|302387645|ref|YP_003823467.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
 gi|302198273|gb|ADL05844.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
          Length = 654

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 192/704 (27%), Positives = 319/704 (45%), Gaps = 67/704 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L   ++     YYQ S+ I+ + EYD L      +      +        P   +G
Sbjct: 7   RMKELVNLLTAAGKAYYQESREIMSNFEYDRLYDELKELEDETGVILSK----SPTQNVG 62

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            ++   L K  H  P LSL+K  ++E L++++             S    L  K+DG  +
Sbjct: 63  YQVLSELPKEAHETPMLSLDKTKSVESLQEWL------------GSQTGVLSWKLDGLTV 110

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y +G    A  RG+G  GE ++   +    IP  L+++    + +RGE  I  +DF 
Sbjct: 111 VLSYNRGTLQKAVTRGNGEIGEVITNNAKVFSNIP--LNISHMGELILRGEAVIKYSDFN 168

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQYEM 257
            +N+E+  V  K Y NPRN  SG +R+LN      R +NF    L       F   + E 
Sbjct: 169 RINEEIEEVAAK-YKNPRNLCSGSVRQLNNQITAQRNVNFKAFSLVTAEGAEFNNSRKEQ 227

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            + ++  GF V +   +  T   +           S+     DGLV   D+ +  + LG 
Sbjct: 228 FEWLKRQGFDVVDY--EMVTRDTLPEAVETFSKNISSYDIPSDGLVLLFDDIAYGEALGR 285

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++ PR  I+ K+A++   TRL  I+    RTG++ PVA  +PV + G  ++ A++HN  
Sbjct: 286 TSKFPRNAIAFKWADEIRETRLDHIEWSASRTGLINPVAIFDPVELEGTTVSRASVHNLS 345

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            ++ L+           +  GD + V +A  +IP++   +       ++    P  CP+C
Sbjct: 346 IMEALE-----------LGEGDEITVYKANMIIPQIAGNLTR-----SKKIRIPDQCPVC 389

Query: 438 -QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
             S  +R +N      V +  CT    C A++L+    FVSRDA NI+GL +  L+ F  
Sbjct: 390 GGSTEIRRVND-----VKSLYCTNP-DCQAKRLKGFSLFVSRDALNIDGLSEATLEKFI- 442

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  IR  ADIF L++ ++     I  + GFG  S  NL  ++ K  + +L R I+ 
Sbjct: 443 ---GAGYIREFADIFHLEQHEEA----ITQMEGFGRKSYDNLIQAVKKASHTTLPRLIYG 495

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   A+ L + + S         +       +   L  VP +G ++A A + ++
Sbjct: 496 LGIAGIGLANAKMLCQEFKS---------DFGKMRKAEEEELTAVPGIGKVLADAWITYF 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGA 675
           +  +N   V+ LL EV+   G  E       E    V TG++     R   QE +   G 
Sbjct: 547 KEEKNNRMVDRLLSEVTIQ-GDGEVRSGGIFEGMVFVMTGSVNHYENRKALQEDIEAHGG 605

Query: 676 VVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
             +  ++ +T  +I  D  +  SK +KA++LGV I++EE F+ L
Sbjct: 606 KAAGSVTSRTTYLINNDTTSNSSKNKKAKELGVPIISEEDFIKL 649


>gi|295110374|emb|CBL24327.1| DNA ligase, NAD-dependent [Ruminococcus obeum A2-162]
          Length = 624

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 183/686 (26%), Positives = 315/686 (45%), Gaps = 72/686 (10%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + + EYDAL    +        +      + P  ++G E   +L K TH  P LSL+K  
Sbjct: 1   MSNREYDALYNELEQTEK----ITGIVLADSPTVRVGYEAVDALPKETHDSPMLSLDKTK 56

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
             E LR F+                     K+DG  I + YE G+   A  RG+G  GE 
Sbjct: 57  EKEVLRGFVGSHKTLL------------SWKMDGLTIVLTYENGELQKAVTRGNGIVGEV 104

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
           ++   R    IP  L +     + +RGE  I+ +DF  +N+ +  V  K Y NPRN  SG
Sbjct: 105 ITNNARVFRNIP--LKIAYQGRLVLRGEAIITYSDFERINNSIEDVDAK-YKNPRNLCSG 161

Query: 223 ILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQA-NTFH 279
            +R+LN      R + F    L    ++     +   ++ +R  GF V            
Sbjct: 162 SVRQLNNQITAERNVRFLAFALVSAQDVDMHNSREFQMEWLRTQGFEVVEYRVVTSENLD 221

Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL 339
             + Y+ E  +   T  +  DGLV   D+ +  + LG  A+ PR   + K+A++   T L
Sbjct: 222 EAMDYFAERIT---TNDFPSDGLVALYDDIAYGESLGSTAKFPRNAFAFKWADEVRETTL 278

Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGD 399
            +I+    RTG++ PVA  +PV + G  ++ A++HN   +K L            + +GD
Sbjct: 279 REIEWSPSRTGLINPVAVFDPVELEGTTVSRASVHNVSIVKEL-----------KLGIGD 327

Query: 400 RVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR--VVRDLNPKTGKLVAAHR 457
            + V +A  +IP++ + +       +     P+ CP+C     V+R+ +      V A  
Sbjct: 328 TIQVYKANMIIPQIAENLTQ-----SGKLEIPNTCPVCGQEARVIREND------VEALY 376

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517
           C     C A++++    FVSRDA NI+GL +  L+ F         I    DIF +++ +
Sbjct: 377 CMNP-DCVAKKIKAFTLFVSRDAMNIDGLSEATLEKFIAK----GFIHNFGDIFEIEKYR 431

Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
                +I  + GFG+ S  NL  SI K +  +L + I+SLGI ++G   A+ + +Y+   
Sbjct: 432 ----DEIVMMDGFGEKSFDNLISSIEKAKKTTLAKVIYSLGISNIGLSNAKVICRYFD-- 485

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
                  +++    +     +  +  +G +IA ++ +++    N   V+ LL  +   I 
Sbjct: 486 -------DDLDKIRSAKEEEISAIDGIGPVIAGSLTKYFAKSENNQKVDHLLGYL--HIV 536

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NP 694
           + EK+ +        V TG+L+    R +A+  +  LG  V+  ++ KT+ +I  D  + 
Sbjct: 537 KEEKSDNQIFAGMNFVITGSLEHFSNRGEAKNLIESLGGKVTGSVTGKTNYLINNDVTSN 596

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            SK +KA++LG+ I++EE FL L ++
Sbjct: 597 SSKNKKARELGIPILSEEDFLKLTEE 622


>gi|166215831|sp|Q4AA72|DNLJ_MYCHJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|144227540|gb|AAZ44349.2| DNA ligase [Mycoplasma hyopneumoniae J]
          Length = 692

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 214/737 (29%), Positives = 354/737 (48%), Gaps = 78/737 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74
           Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  P
Sbjct: 6   QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 65

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+G ++     KV HS P LSL K ++ E+L K+  +     +     ++ F +EPKI
Sbjct: 66  SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKASEILK-----TVTFFVEPKI 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEIIEVRGEVY 192
           DG  +++ Y+ G  + A  RGDG  GE+V      I    IP+ +  N  E +EVRGE+Y
Sbjct: 121 DGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKI--NYLEDLEVRGEIY 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRR-------LNPTDIT--------RYLN 237
           I  + F +L  E      K + NPRNAASGILRR       ++   I         RYL 
Sbjct: 179 IDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLK 233

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F + L    +     Q++ +  +R LGF VN   ++ +    + ++ + +K  R  L Y
Sbjct: 234 SFFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNY 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T  A+
Sbjct: 294 NIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAK 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++  +
Sbjct: 354 IEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSV 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            N        FS    CP C S +V        +      C     C    L+++ HF S
Sbjct: 403 HN---YPKTNFSIVKNCPKCNSELV------NSESGLDQFCQNQF-CPEIILQKIVHFCS 452

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI---------- 527
           ++A NIE L +++++ F +       I    DIF L+ + +    ++ N           
Sbjct: 453 KNALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNAS 508

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                 S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +         N+
Sbjct: 509 QSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLDFNL 568

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           + + +D           G +I +++++++ N +N   +  L             N S+  
Sbjct: 569 LKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSN-- 616

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
                  +G L K  R +    + + GA     L++KTD +++G + GSK+EKA++ G+K
Sbjct: 617 SWASFAISGKLSKP-RDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIK 675

Query: 708 IMNEEQFLFLLQQYNTT 724
           I+NE QF  L++    T
Sbjct: 676 IINEVQFFDLIKNSKKT 692


>gi|71893614|ref|YP_279060.1| DNA ligase [Mycoplasma hyopneumoniae J]
          Length = 693

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 214/737 (29%), Positives = 354/737 (48%), Gaps = 78/737 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74
           Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  P
Sbjct: 7   QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 66

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+G ++     KV HS P LSL K ++ E+L K+  +     +     ++ F +EPKI
Sbjct: 67  SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKASEILK-----TVTFFVEPKI 121

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEIIEVRGEVY 192
           DG  +++ Y+ G  + A  RGDG  GE+V      I    IP+ +  N  E +EVRGE+Y
Sbjct: 122 DGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKI--NYLEDLEVRGEIY 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRR-------LNPTDIT--------RYLN 237
           I  + F +L  E      K + NPRNAASGILRR       ++   I         RYL 
Sbjct: 180 IDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLK 234

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F + L    +     Q++ +  +R LGF VN   ++ +    + ++ + +K  R  L Y
Sbjct: 235 SFFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNY 294

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T  A+
Sbjct: 295 NIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAK 354

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++  +
Sbjct: 355 IEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSV 403

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            N        FS    CP C S +V        +      C     C    L+++ HF S
Sbjct: 404 HN---YPKTNFSIVKNCPKCNSELV------NSESGLDQFCQNQF-CPEIILQKIVHFCS 453

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI---------- 527
           ++A NIE L +++++ F +       I    DIF L+ + +    ++ N           
Sbjct: 454 KNALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNAS 509

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                 S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +         N+
Sbjct: 510 QSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLDFNL 569

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           + + +D           G +I +++++++ N +N   +  L             N S+  
Sbjct: 570 LKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSN-- 617

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
                  +G L K  R +    + + GA     L++KTD +++G + GSK+EKA++ G+K
Sbjct: 618 SWASFAISGKLSKP-RDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIK 676

Query: 708 IMNEEQFLFLLQQYNTT 724
           I+NE QF  L++    T
Sbjct: 677 IINEVQFFDLIKNSKKT 693


>gi|227494609|ref|ZP_03924925.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436]
 gi|226832343|gb|EEH64726.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436]
          Length = 806

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 206/808 (25%), Positives = 342/808 (42%), Gaps = 111/808 (13%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P++     +A  +   L  EI+     YY    P   D+EYD L      +   +P 
Sbjct: 21  EKTPVDTPVPAEATAKWRDLVTEINQMRFDYYNLDAPTASDAEYDVLFEELKDLEAKWPM 80

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L     P+ P   +GG    +   V H IP LSL+ ++++E   +++ R          N
Sbjct: 81  LV---TPDSPTQTVGGSAVNTFAPVAHRIPMLSLDDVFSVEATHQWLDRCLTGLGM---N 134

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            +    E K+DG  ++I YE G    AA RGDG  GEDV+A +  I  +PR L+ + P  
Sbjct: 135 QVEILAEVKVDGLAVSILYENGLLTRAATRGDGRVGEDVTANVLTISNVPRQLTGDFPAS 194

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +EVRGE+Y    DFL  N++    G K + N RNAA+G LR+ +P +   R L    HG+
Sbjct: 195 VEVRGEIYFPIADFLDFNEQRALRGEKTFVNARNAAAGSLRQKDPAETAKRPLAMVCHGI 254

Query: 244 G--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G  +  +     Q+   ++++  G PV+   R  +T   I          R+ L ++IDG
Sbjct: 255 GIYEGGQSQPDSQHAWYEQLKAWGLPVSEYTRLISTHAEIDEVIEYFGKHRADLSHEIDG 314

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V+KVD    Q  LG  +R+PRW  ++KF   +  TRLLDI  Q+GRTG +TP   +E V
Sbjct: 315 MVFKVDSRQYQAALGTTSRAPRWAAAYKFPPTEVHTRLLDIRTQVGRTGRVTPYGVMEKV 374

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +++ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R
Sbjct: 375 LVAGSHVSSATLHNQDEVKR-----------KGVLIGDMVILRKAGDVIPEILGPVESLR 423

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  PS CP C + +         +     RC    +C AQ  +R+     R AF
Sbjct: 424 DGSERAFVMPSHCPSCGAPL-----APAKEGDVDLRCPNQASCPAQITQRISFMGGRSAF 478

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIR--IPADIFTLQRRQQTSTTKIENILGFGDVSVTN-- 537
           +IEGLG +      + E   F +   + A    L     TS  K   +  F   ++ +  
Sbjct: 479 DIEGLGDESALALTQPEVNRFEVISALAAGEPVLLAETDTSEDKTIQLDSFTRENLHHGE 538

Query: 538 LYDSINKRRNISLERFIFS-LGIRHVGAEI------------ARSLAKYYLSYQNFAQ-- 582
           L     +      E  + S   I ++ A               R++A      + + Q  
Sbjct: 539 LITQAEQLLPRPSETVLTSEADIFNLTANAVKDVYVWKYGKFPRNVADETGYEEGWRQIR 598

Query: 583 -------------------------------EINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
                                          ++           L+ + +  VG   +QA
Sbjct: 599 AFWSTGRRLKSGEWAKGQEPKPTQDLTKMLDQLEKAKQQPLWRVLNALSIRHVGPTASQA 658

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQ-RH 664
           + + +++       +A + E++   G  +    + +        K +V T     ++   
Sbjct: 659 LADHFRSLD--ALQQASVAELAAVEGVGQIIAEAVVAWFQVDWHKHIVNTWAASGVRMED 716

Query: 665 KAQEYVTQ----LGAVVSAIL------SRKTDIIIVGDNPGS-----------------K 697
           +A E + Q    L  VVS  +      S K  II  G    S                 K
Sbjct: 717 EATEELPQTLAGLTIVVSGTMPGYDRESAKAAIIARGAKASSSVSKKTSLVVAGPGAGSK 776

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             KA+ LGV +++E +F  LL +    +
Sbjct: 777 ATKAETLGVPLVDETKFQLLLDEGLEAV 804


>gi|54020343|ref|YP_115627.1| DNA ligase [Mycoplasma hyopneumoniae 232]
 gi|81378764|sp|Q601T8|DNLJ_MYCH2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53987516|gb|AAV27717.1| DNA ligase [Mycoplasma hyopneumoniae 232]
          Length = 692

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 214/737 (29%), Positives = 353/737 (47%), Gaps = 78/737 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74
           Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  P
Sbjct: 6   QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 65

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+G ++     KV HS P LSL K ++ E+L K+  +     +     ++ F +EPKI
Sbjct: 66  SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKAREILK-----TVTFFVEPKI 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEIIEVRGEVY 192
           DG  +++ Y+ G  + A  RGDG  GE+V      I    IP+ +  N  E +EVRGE+Y
Sbjct: 121 DGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKI--NYLEDLEVRGEIY 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRR-------LNPTDIT--------RYLN 237
           I  + F +L  E      K + NPRNAASGILRR       ++   I         RYL 
Sbjct: 179 IDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLK 233

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F + L    +     Q++    +R LGF VN   ++ +    + ++ + +K  R  L Y
Sbjct: 234 SFFYTLVNPEKHKINSQFDSTNFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNY 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T  A+
Sbjct: 294 NIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAK 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++  +
Sbjct: 354 IEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSV 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            N        FS    CP C S +V        +      C     C    L+++ HF S
Sbjct: 403 HN---YPKTNFSIVKNCPKCNSELV------NSESGLDQFCQNQF-CPEIILQKIVHFCS 452

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI---------- 527
           ++A NIE L +++++ F +       I    DIF L+ + +    ++ N           
Sbjct: 453 KNALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNAS 508

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                 S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +         N+
Sbjct: 509 QSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLDFNL 568

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           + + +D           G +I +++++++ N +N   +  L             N S+  
Sbjct: 569 LKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSN-- 616

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
                  +G L K  R +    + + GA     L++KTD +++G + GSK+EKA++ G+K
Sbjct: 617 SWASFAISGKLSKP-RDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIK 675

Query: 708 IMNEEQFLFLLQQYNTT 724
           I+NE QF  L++    T
Sbjct: 676 IINEVQFFDLIKNSKKT 692


>gi|240047590|ref|YP_002960978.1| DNA ligase [Mycoplasma conjunctivae HRC/581]
 gi|239985162|emb|CAT05172.1| DNA ligase [Mycoplasma conjunctivae]
          Length = 673

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 209/719 (29%), Positives = 342/719 (47%), Gaps = 61/719 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   + ++++  L ++I   +  Y+    P + D  YD   ++   + + +  L   E+ 
Sbjct: 1   MENHEIKQQILQLRKKIENWNHEYFDLQNPSVDDLIYDEELKKLKILENKYYFLFSLEEL 60

Query: 72  NG-PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           N  P  +IG + +    KV HS P LSL K ++IE+L K++ +              F +
Sbjct: 61  NSSPTQQIGAQTSTKFNKVYHSSPMLSLNKAYDIEELEKWVKK------ANLVGEDNFYV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEIIEVR 188
           EPKIDG  I + Y+KGK   A  RGDG  GED+      I    IP+ +  N  + +EVR
Sbjct: 115 EPKIDGLSIALIYKKGKLSSALTRGDGLQGEDILHNALRIANKFIPKQI--NYQQDLEVR 172

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR------YLNFFVHG 242
           GE++IS  DF  L            ANPRNAASG+LRR+  T          YL+ F++ 
Sbjct: 173 GEIFISNQDFQIL---QQNSNSSSLANPRNAASGLLRRIEKTSKNSKINDFDYLSCFIYN 229

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           L        K   E    +  LGF +N     A     IV    +++ +R  L Y+IDG+
Sbjct: 230 LVNPQLHKIKNIKESYLFLEKLGFHLNPLSSLAKGLTNIVKQIGKIEKLRPQLEYNIDGV 289

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+++ + +QLG  ++ P   I+ KF ++   T+LLDI   +GRTG +T  A+LEP+N
Sbjct: 290 VIKVNDYEIYEQLGRTSKFPHGAIAFKFEDQIVQTKLLDIFATVGRTGKITYNAKLEPIN 349

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A L N  YI+ L            I +   VLVK++GE+IP+++  + +   
Sbjct: 350 LLGTTVSAAILPNYKYIENL-----------KIAINSDVLVKKSGEIIPQIIASVQD--- 395

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             A  F   S CP C   +V   +           C    AC A QL+++ HF S+ AFN
Sbjct: 396 HQATNFQKISHCPSCNFELVDSPSGI------DQFCQN-FACPAIQLKKIAHFCSKSAFN 448

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI-ENILGFGDVSVTNLYDS 541
           I  L ++++     +      I+   DIF L+       ++  +  +     S+TN  + 
Sbjct: 449 IASLAEKRIQTLIDTN----LIKNSCDIFFLKDNLDEMHSRFAKEKVKLKAKSITNFLNE 504

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   +     RFIF+LGI+++G + A+++AKY    +             N D+  L   
Sbjct: 505 IELSKKNDFYRFIFALGIKNIGLKAAKAIAKYVGDVEQL----------INFDFAQLEND 554

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
              G I+ Q+++EF+ N  N   +                     +       TG L K 
Sbjct: 555 YDFGPIMVQSLLEFFANSNNQELLN---CFKKVDFAFKPTQKDFPV-WASFAITGKLSK- 609

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R + ++ + + GA   + L++KT  ++ G++ GSK+EKA+   + I+NEEQF  L+++
Sbjct: 610 SRDQFEKIIVESGAQFDSNLNKKTTYLLAGESSGSKIEKAKAYNINIINEEQFWDLIEK 668


>gi|271965050|ref|YP_003339246.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
 gi|270508225|gb|ACZ86503.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
          Length = 696

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 196/715 (27%), Positives = 314/715 (43%), Gaps = 83/715 (11%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY      + D  YD L R   A     PD      P  P  K+ G   +    V H++P
Sbjct: 30  YYGDGTSTLDDDAYDRLVRGIQAYEAEHPDEVL---PTSPTGKVAGGAVVG--DVPHTVP 84

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ ++    L  +   + R   +       +++EPK+DG  I  RY  G+ V    R
Sbjct: 85  MLSLDNVFGAGQLADWAASLERRLGRPVT---EWSVEPKLDGLAIAARYRGGRLVQLVTR 141

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG +GEDVS  I  I  +P  L+   P  +E+RGEV ++ + F     +  A     +A
Sbjct: 142 GDGTAGEDVSHAIGTIVGLPARLAE--PVTVELRGEVMMTASQFEDACVKRQAHDGTTFA 199

Query: 215 NPRNAASGILRRLNPTDITRYLNFFVHG-LGKTSEIFAKG-------QYEMLQKMRCLGF 266
           NPR+AA+G LR  +   +   L FF +G L    +   +          E++  +   G 
Sbjct: 200 NPRSAAAGTLRAQDRPYVC-ELTFFGYGALPYPDDTSEQAVQLRELPHSEVMTWVAGQGV 258

Query: 267 PVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
                       A T   I     ++ + R+ LP+ IDG+V K D  + Q Q G  +R+P
Sbjct: 259 QTPAVTDVGGIVATTLEQIQERVEQIAAKRTELPFGIDGIVIKCDLAADQAQAGFSSRAP 318

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW I++K    +  T+LL ++   GR+GI+ P A LEPV + G+++T ATLHN   I   
Sbjct: 319 RWAIAYKLPATEKITKLLGVEWNTGRSGIIAPRAVLEPVELDGSIVTYATLHNVADITR- 377

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     R + +GD V+V +AG+VIP+V   +V+ R  D QP + P  CP C   + 
Sbjct: 378 ----------RGLMLGDSVVVYKAGDVIPRVEAPVVHLRTGDEQPIAIPQVCPTCGDAI- 426

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
                         RC  G AC  + +  + +   RD  +IEGL + ++         A 
Sbjct: 427 -------DASQERWRCVRGRAC--RVIASIGYAAGRDQLDIEGLAENRIQQLLD----AG 473

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            I   AD+F L R Q     ++         S  NL  +I + +   L R   +LG+R  
Sbjct: 474 LIVDFADLFYLTREQVLGLERMGA------TSTDNLLAAIERAKAQPLSRVFCALGVRGT 527

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G  ++R +A+++ S            A    D  ++  V  +G   A  +V       ++
Sbjct: 528 GRSMSRRIARHFGSMD----------AIRAADAEAIEAVEGIGPKKAPGVVAELVELADL 577

Query: 623 --CAVEALLKEVSPSIGRHEKNVSS-------------EIENKKLVFT----GTLQKIQR 663
               V+A +    P      +  +               +    +V T    G L+ + R
Sbjct: 578 IDKLVKAGVTMTEPGWTPPAEPGADAQADPEAGGTSGLPLAGMSVVVTGAMSGALEALTR 637

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++  E + + G   S+ +S KT +++ G+  GSK  KA+ LGV+I+  E+F  L+
Sbjct: 638 NEMNELIERAGGKASSSVSAKTSLLVAGEKAGSKRAKAESLGVRIVGPEEFAGLV 692


>gi|329937546|ref|ZP_08287104.1| DNA ligase [Streptomyces griseoaurantiacus M045]
 gi|329303422|gb|EGG47309.1| DNA ligase [Streptomyces griseoaurantiacus M045]
          Length = 697

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 209/730 (28%), Positives = 325/730 (44%), Gaps = 91/730 (12%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
               YY      + D  YD L R   A     P+      P  P  K+ G        V 
Sbjct: 18  ASAAYYADGTSALDDEAYDRLVRGIAAWEADHPEQVL---PGSPTGKVAGGAVEG--DVP 72

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H++  LSL+ +++ E+   +   + R   +       F++EPK+DG  +  RY KG+   
Sbjct: 73  HTVAMLSLDNVFSPEEFTAWTASLAR---RAGHEVERFSVEPKLDGLAVAARYTKGRLER 129

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
              RGDG +GEDVS  I  I  +P  L+   P  +EVRGEV ++   F   N+   A G 
Sbjct: 130 LITRGDGTAGEDVSHAIGTIEGLPVELAE--PVTVEVRGEVLMTTAQFEHANEVRTAHGG 187

Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA--------KGQYEMLQKMR 262
           +P+ANPR A++G LR       T  + FF +GL                +   E++ +  
Sbjct: 188 QPFANPRGASAGSLRARE-RAYTVPMTFFGYGLLPLPGTDTALATRLADEAHSELMTRAA 246

Query: 263 CLGFPVNNGVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             G             A T   ++    E+ ++R+ LP+ IDG+V K D  + Q+  G  
Sbjct: 247 AYGINTTATTAVPGSTAGTVTEVLDRVREIAALRAELPFGIDGIVVKADLAADQRAAGSG 306

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           +R+PRW I++K    +  TRLL+++  +GRTGI+ P A LEPV I GA IT ATLHN   
Sbjct: 307 SRAPRWAIAYKLPAVEKITRLLEVEWNVGRTGIIAPRAVLEPVEIDGATITYATLHNPAD 366

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             RD+R+GDRV+V RAG+VIP+V   + + R  + QP  FP+ CP C 
Sbjct: 367 ITR-----------RDLRLGDRVMVHRAGDVIPRVEAPVAHLRTGEEQPIVFPAVCPRCG 415

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + +               RC  G  C    +  L +   RD  +IEGLG  ++       
Sbjct: 416 AGI--------DTGEQRWRCENGRNC--HLVAALSYAAGRDQLDIEGLGHTRVVQLVD-- 463

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  +   AD+F+L R Q     ++      G+ S  NL  ++   +   L R + +LG
Sbjct: 464 --AGLVTDLADLFSLTREQLLGLERM------GETSTDNLLAALETAKGRPLARVLCALG 515

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IR  G  ++R +A+++ +  +              D  ++ RV  +G   A +IV     
Sbjct: 516 IRGTGRSMSRRIARHFATMDHIRAA----------DAEAMRRVEGIGTEKAPSIVAELAE 565

Query: 619 PRNI--CAVEALLKEVSP---------------------SIGRHEKNVSSEIENKKLVFT 655
              +    V A +    P                          E++    +    +V T
Sbjct: 566 LAPLIDRLVAAGVNMTEPGATPPAPEEPATGEQAEDTRGGAEAAEESPGGPLAGMTVVVT 625

Query: 656 GT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           G     L+K+ R++  E V Q G   S+ +SRKT +++ G+  GSK  KA+ LG+++   
Sbjct: 626 GAMTGRLEKLSRNRMNELVEQAGGRSSSSVSRKTTLVVAGEGAGSKRAKAESLGIRLATP 685

Query: 712 EQFLFLLQQY 721
           E+F  LL  +
Sbjct: 686 EEFAALLADH 695


>gi|167761341|ref|ZP_02433468.1| hypothetical protein CLOSCI_03749 [Clostridium scindens ATCC 35704]
 gi|167661007|gb|EDS05137.1| hypothetical protein CLOSCI_03749 [Clostridium scindens ATCC 35704]
          Length = 649

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 189/706 (26%), Positives = 318/706 (45%), Gaps = 65/706 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L + ++     YYQ ++ I+ + EYD L      +             N P   +G 
Sbjct: 1   MQELVELLNKAGRAYYQNAEEIMSNYEYDRLYDELLKLEEE----LGLTLSNSPTANVGY 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E+   L K  H  P LSL+K  ++E+L++F+                  +  K+DG  I 
Sbjct: 57  EVLSELPKERHERPMLSLDKTKDVEELKRFV------------GDQKALMSWKMDGLTIV 104

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y +G+   A  RG+G  GE V+   R    IP  L +     + +RGE  I   DF  
Sbjct: 105 LTYREGRLFKAVTRGNGEVGEVVTNNARVFKNIP--LQIAYQGQLILRGEAVIGYKDFEK 162

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA-KGQYEML 258
           +N+E+  V  + Y NPRN  SG +R+LN      R + F+   L +   +     +   +
Sbjct: 163 INEEIEDVDAR-YKNPRNLCSGSVRQLNNEITAKRNVKFYAFSLVEAEGVDFYNSRARQM 221

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             +   GF V        T   + +   +     +   +  DGLV   D+ +  + LG  
Sbjct: 222 NWLIEQGFEVVEFQEV--TRDTVEAEVLKFSEKIAQNDFPSDGLVLVYDDIAYGQSLGRT 279

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           ++ PR   + K+A++   TRLL+I+    RTG++ PVA  EPV + G  ++ A++HN   
Sbjct: 280 SKFPRDSFAFKWADELRETRLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISI 339

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++ L+           + VGD + V +A  +IP++   +      D      P  CP+C+
Sbjct: 340 MEELE-----------LGVGDTIEVYKANMIIPQIARNLTRSGVKD-----IPKNCPVCR 383

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            R              A  C     C A+ ++    FVSRDA NIEGL +  L+ F    
Sbjct: 384 GRTEVRQVSNA----KALYCINP-DCQAKHVKSFALFVSRDALNIEGLSEATLEKFIS-- 436

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                IR  ADIF L R +     +I+ + GFG+ S  NL DSI K R  +L R I+ LG
Sbjct: 437 --MGYIREYADIFHLDRYR----EEIQTMEGFGEKSYQNLIDSIEKARTTTLPRVIYGLG 490

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I ++G   A+ + K +           ++ A        L  +  +G++IA A V+++ +
Sbjct: 491 IANIGLANAKMICKEFQ---------YDLEAMLKATVEELNAISGIGEVIATAFVDYFSD 541

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677
             +   +  LL E+         + +        V TG+++    R++ +E +  LG  V
Sbjct: 542 NVHRKRLRNLLAELIIP-KEEADSAAQIFNGVNFVITGSVEHFANRNEVKELIESLGGKV 600

Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +  ++ KT+ +I  D  +  SK +KA  LG+ I++EE FL ++++ 
Sbjct: 601 TGSVTSKTNYLINNDVTSTSSKNKKANDLGIPIISEETFLKMVEEG 646


>gi|71894578|ref|YP_278686.1| DNA ligase [Mycoplasma synoviae 53]
 gi|123734274|sp|Q4A5J6|DNLJ_MYCS5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71851366|gb|AAZ43975.1| DNA ligase [Mycoplasma synoviae 53]
          Length = 697

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 191/743 (25%), Positives = 342/743 (46%), Gaps = 77/743 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +Q ++++ SL   + + +  YY    P + D  YD+L      +   +P L      
Sbjct: 1   MSNQQIKEKIISLNNYLKHLNHLYYDLDAPEVDDKTYDSLYNELLELEAKYPSLVLE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +     IG  ++    K  H+   LSL+K +   ++  F      F Q K+  +  F+LE
Sbjct: 58  DSVTKIIGAFVSNKFKKTKHNKEMLSLDKAYKESEIFSFYE---NFTQYKNLENFGFSLE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I+I Y+ GKF+ A  RGDG +GEDVS  +  I  +P+ +S   P  +EVRGE+
Sbjct: 115 PKIDGLSISIHYDNGKFIKAITRGDGTTGEDVSENVFQIRDVPKQISYLKP--LEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKP----------------------------YANPRNAASGI 223
           Y+ K+ + +LN+++     +                             + N RNAA+G 
Sbjct: 173 YMKKSTWKSLNEDIKNQYFQTNIEKIFSYMQALPKSKSWSNLKIKTPIFFKNARNAAAGT 232

Query: 224 LRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           LR+ +P  + +R L+   + +    E   K Q E+L  ++   F VN   + A     I+
Sbjct: 233 LRQKDPKIVKSRNLSSLFYEIVSPLEHNLKTQMEVLAFLKEQNFEVNEFQKLAKNDQEIM 292

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
              NE   I++   +D DG V K +     +Q+G  ++ P+W I++K+  ++A+T++L+I
Sbjct: 293 FEINEFSKIKNNFEFDCDGFVIKFNLIDKWEQIGFTSKFPKWAIAYKYMLEEANTKILNI 352

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
             Q+GRTG +T +A+  PV +    + NATLHN ++IK             +I +GD + 
Sbjct: 353 VAQVGRTGNITYIAQFMPVELNNTTVQNATLHNYEFIKK-----------NNINIGDEIT 401

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           + ++GE+IPKV+ I   +++ D+  F     CP C S +         +      C    
Sbjct: 402 IIKSGEIIPKVISIY--KKNTDS-VFEKVLNCPSCNSLLEIP------EGYVDQFCRNE- 451

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTST 521
            C  ++++ L  FVS++  NI  L  Q +  F+    P   +R   DIF L+    +   
Sbjct: 452 NCDEKKIQMLTFFVSKNCLNITNLSVQNIRIFYN--HPVIQMREIQDIFLLKNHVDEIKK 509

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            K        +  + N+  SI K ++  L   + +LGI+ +G   A  L        +  
Sbjct: 510 IKFFAGKSQENKKINNILQSIEKAKDAYLRNVLAALGIKGIGNIAANLLTNKITKLSDLN 569

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
              +  +          + +   G+   + + EF  + +N   ++     +  ++     
Sbjct: 570 NLTDEDL----------LSIDTFGEKSIENLKEFLSSEKNQDLIK----FLDENLNYLNS 615

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEK 700
             SS++ N     TG+L  I R + ++ +   G + S  +S+ T  +I      S K++K
Sbjct: 616 KKSSKLNNLNFAITGSLS-ISRDEFKKIILDNGGIFSNSVSKNTSYLISNSKENSTKIKK 674

Query: 701 AQQLGVKIMNEEQFLFLLQQYNT 723
           A +  +K++ EE+F  LL++ N 
Sbjct: 675 ALENNIKVITEEEFHNLLKEENA 697


>gi|288870885|ref|ZP_06115627.2| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479]
 gi|288865557|gb|EFC97855.1| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479]
          Length = 645

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 182/692 (26%), Positives = 313/692 (45%), Gaps = 67/692 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YYQ S+ I+ + EYD L      +      +        P   +G E+   L K  H  P
Sbjct: 15  YYQESREIMSNYEYDKLYDELAELEKETGVVLSK----SPTQSVGYEVLSELPKERHESP 70

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+K  +  DL++++                  L  K+DG  + + Y  G    A  R
Sbjct: 71  MLSLDKTKSTADLQEWL------------GDQTGILSWKLDGLTVVLTYSGGTLKKAVTR 118

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           G+G  GE +++  R    +P  +S      + +RGE  I  ++F  +N+ +  V  + Y 
Sbjct: 119 GNGEIGEVITSNARVFANVPVTISFQ--GELVLRGEAVIRYSEFNRINEAIDDVDAR-YK 175

Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGV 272
           NPRN  SG +R+LN      R +NF    L     + F   + E  + ++  GF V    
Sbjct: 176 NPRNLCSGSVRQLNSQITAERNVNFEAFALVTAEGVDFNNSRKEQFEWLKRQGFDVVEYR 235

Query: 273 RQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
              A+T    V  + E     S      DGLV  +D+ +  + LG  A+ PR  I+ K+A
Sbjct: 236 TVTADTLPEAVEAFAEAV---SGYDIPSDGLVLLLDDIAYGESLGRTAKFPRNAIAFKWA 292

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
           ++   T+L  I+    RTG++ PVA  +PV + G  ++ A++HN   ++ L         
Sbjct: 293 DEIRETKLQYIEWSPSRTGLINPVAVFDPVELEGTTVSRASVHNLSIMESLA-------- 344

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
              +  GD + V +A  +IP++ D +       +     P  CP+C     R    + G 
Sbjct: 345 ---LGEGDAITVYKANMIIPQIADNLTR-----SGKIQIPEKCPVCGG---RTEVRQAGD 393

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
           + +   CT    C A++++    FVSRDA NI+GL +  L+ F      A  I+  ADIF
Sbjct: 394 VRS-LYCTNP-DCQAKRIKSFSLFVSRDALNIDGLSEATLEKFI----GAGFIKEFADIF 447

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L R ++T    I  + GFG  S  NL  +     + +L R ++ LGI  +G   A+ L 
Sbjct: 448 HLDRYEET----ITQMEGFGQKSYDNLIRATEAASHTTLARMVYGLGISGIGLANAKMLC 503

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + +        + + +     ++ +    V  +G ++A A + ++ + +N   V+ LL E
Sbjct: 504 RKFK------FDFDRMRHATAEELVE---VDGIGAVLADAWIRYFADEKNQETVDHLLSE 554

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           ++          +   E    V TG+++    R++ +E +   G   +  ++ KT  +I 
Sbjct: 555 LTFEQEEESAEEAVF-EGMTFVITGSVEHFANRNELKEAIEARGGKATGSVTSKTTYLIN 613

Query: 691 GD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            D  +  SK +KA+ LGV I++EE+F+ +L +
Sbjct: 614 NDVTSNSSKNKKAKDLGVPIISEEEFIKMLGE 645


>gi|220929395|ref|YP_002506304.1| DNA ligase, NAD-dependent [Clostridium cellulolyticum H10]
 gi|254781296|sp|B8I3I1|DNLJ_CLOCE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219999723|gb|ACL76324.1| DNA ligase, NAD-dependent [Clostridium cellulolyticum H10]
          Length = 657

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 183/714 (25%), Positives = 329/714 (46%), Gaps = 67/714 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + +    + +      YYQ +  I+ + EYD L      +      +      N 
Sbjct: 1   MADKIQLMKDKIEILDRAAKAYYQENTEIMSNIEYDKLYDELLELEKETGVVLS----NS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+  +L K  H  P LSL+K  ++  L++++             +    L  K
Sbjct: 57  PSIHVGYELLSNLPKERHEKPMLSLDKTKDVGTLKEWL------------GTQKGILSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y+ G  V A  RG G  GE ++   R    +P  ++      + +RGE  I
Sbjct: 105 LDGLTIVLTYQDGHLVKAVTRGTGEEGEVITNNARVFRNLPVTIA--YKGTLILRGEAII 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
             +DF+ +N+E+  VG K Y NPRN  SG +R+LN    + R + FF   L K   +   
Sbjct: 163 RYSDFIKINNEIADVGVK-YKNPRNLCSGSVRQLNNKVTSERNVYFFGFSLVKADNVELD 221

Query: 253 -GQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +   +  ++  GF + +     ++     V ++++         +  DGLV   ++ +
Sbjct: 222 NSRASQMNWLKNQGFDIVDFKEVTSSNIEETVQWFSQNIE---ANDFPSDGLVLTFEDIA 278

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             + LG  A+ PR  I+ K+ ++   T LL+I+    RTG++ P+A  EPV + G  ++ 
Sbjct: 279 YGESLGSTAKFPRDSIAFKWRDEIKETTLLNIEWSPSRTGLINPIAIFEPVELEGTTVSR 338

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN   ++GL+           + +GD + V +A  +IP++ + +   R   A     
Sbjct: 339 ASIHNISIMEGLE-----------LGIGDTIGVYKANMIIPQISENLT--RSGMAP---I 382

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C+ +       K    V    C     C A+Q++   HFV RDA N+EGL +  
Sbjct: 383 PEECPVCKGKTEI----KQENGVKTLYCVNN-ECLAKQIKSFTHFVGRDAMNMEGLSEAT 437

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+           I+  AD+F +++ +         + G G+ S   L  SINK R  + 
Sbjct: 438 LEKLIAK----GLIKELADLFHIEKYKNEILE----LEGLGEKSFNKLITSINKARKTTA 489

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++SLGI +VG   A+ + +Y+        + N I    N ++  LI++  +GDI+A+
Sbjct: 490 VRLLYSLGIPNVGLSNAKLICRYFK------YDWNKI---ENAEFSELIQIGGIGDIMAE 540

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEY 669
           + + F+ + +    V+ +L E+               EN   V TG++++ + R + ++ 
Sbjct: 541 SFIRFFSDEKKKVIVQDVLNELELE-EVQLSQSEQIFENLNFVITGSVEQFKNRDELKDV 599

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           + + G  V+  ++ KT+ +I  DN    SK +KA++L + I+ E QFL  L   
Sbjct: 600 IEEKGGKVTGAVTSKTNYLINNDNMSNSSKNKKAKELNISIITEAQFLEWLNNG 653


>gi|85713360|ref|ZP_01044373.1| NAD-dependent DNA ligase [Idiomarina baltica OS145]
 gi|85692818|gb|EAQ30803.1| NAD-dependent DNA ligase [Idiomarina baltica OS145]
          Length = 449

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 185/465 (39%), Positives = 267/465 (57%), Gaps = 27/465 (5%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             + +  LEQ+++ ++  YY+  +P I DSEYD L R    +    P+L        P  
Sbjct: 7   VEQRMRELEQQLTRYNKEYYELDEPTIPDSEYDKLFRELQTLEANNPELKSQH---SPTE 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+G +   +   VTH +P LSL+  ++ E+   F  RI +        +  F  EPK+DG
Sbjct: 64  KVGSKPLDAFTSVTHELPMLSLDNAFSSEEFSAFAERIQQRVDSSV--AWAFCCEPKLDG 121

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             ++I YE G+ V AA RGDG+SGED++A ++ I  +P  LS + PE +EVRGEV++  +
Sbjct: 122 LAVSILYENGQLVRAATRGDGYSGEDITANVKTIKNVPLQLSDDAPERLEVRGEVFMMTD 181

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI----FA 251
            F   ND       K +ANPRNAA+G LR+L+      R L+F+ + LG  SE      A
Sbjct: 182 AFERFNDNARKRDEKVFANPRNAAAGSLRQLDSRITAKRPLHFYAYSLGVVSEQDQEQLA 241

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE LQ++   G P+N+ V++  +     +YY  M   R  L Y+IDG+VYKVD   +
Sbjct: 242 DSHYERLQQLSAWGLPINDEVKRVESVEACETYYQAMLEKRDRLRYEIDGIVYKVDSIRM 301

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  AR+PRW I+ KF  ++  TR+  +D Q+GRTG +TPVARLEPV++GG  ++NA
Sbjct: 302 QNELGFVARAPRWAIARKFPAQEQLTRITGVDFQVGRTGAITPVARLEPVSVGGVTVSNA 361

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D +  L            + +GD V ++RAG+VIP+VV ++ +ER  DAQ   FP
Sbjct: 362 TLHNADEVARL-----------GVMIGDTVSIRRAGDVIPQVVSVLESERPEDAQAIEFP 410

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           S CP+C S V R          A  RC+GGL C+AQ+ E +KHF 
Sbjct: 411 SHCPVCDSEVERIEGE------AVARCSGGLICAAQRKEAIKHFA 449


>gi|119953337|ref|YP_945546.1| NAD-dependent DNA ligase LigA [Borrelia turicatae 91E135]
 gi|254781266|sp|A1QZY4|DNLJ_BORT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119862108|gb|AAX17876.1| NAD-dependent DNA ligase [Borrelia turicatae 91E135]
          Length = 676

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 199/715 (27%), Positives = 349/715 (48%), Gaps = 61/715 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I+    E+  L   I   +  YY  S P + D  YD    R   +   +P+       + 
Sbjct: 10  IKDIEDEILCLRDNIRKWNKEYYVDSSPSVSDLTYDKALLRLQDLESKYPEYKTL---DS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K G ++  +  +VTHS P LSL+K ++I++L  +I ++         +    ++EPK
Sbjct: 67  PTLKFGSDLLNNFEEVTHSFPILSLDKAYDIKELLLWIEKMV-LEGSSLGSYTGISVEPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I + Y+ G    A  RGDG  G DV+  +R I  +P  LS++    + +RGE+YI
Sbjct: 126 IDGCSIVLYYKDGILQKALTRGDGRVGNDVTENVRTIKNVP--LSIDEKVELVLRGEIYI 183

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
           +K +FL +N  +    + PY N RN ASGILRR+N  ++    L+ FV+ +  +S     
Sbjct: 184 TKENFLKINHTL----KNPYLNARNLASGILRRINSREVASFPLDIFVYDILYSS-FGLS 238

Query: 253 GQYEMLQKMRCLGFPVNNGVRQA--NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             ++   K++  GF +N   +         I ++  +++  R++L Y+IDG+V KVD F 
Sbjct: 239 TNHDAFDKLKKFGFKINPFCKFFGGKNLEEITNHVKKIEMQRNSLEYEIDGVVLKVDSFI 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L+  LG  +  P+W +++KF      ++++DI +Q+GR+G +TPVA +E V + GA ITN
Sbjct: 299 LRDILGYTSHHPKWSVAYKFESCTGVSKIVDIVVQVGRSGKITPVAHVEKVFVAGAFITN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN+DYI  +            + VGD V + R G+VIP V  ++          F  
Sbjct: 359 ASLHNQDYIDSI-----------GLNVGDVVAISRRGDVIPAVELVVEKLSIGS---FKI 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            S CP C+  ++++         +   C     C  + +E++K+F S+   NI GL  + 
Sbjct: 405 SSNCPSCKMALIKE--------GSHLFCVNK-HCPYRIIEQIKYFCSKKCMNIVGLSGKT 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++F F+ +     I    +++T       +  ++ N+ GF    + NL  SI+  +    
Sbjct: 456 IEFLFEMK----FISSEIELYTF------NFDRLINLRGFDLKRIDNLKRSISDSKGRPF 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + +  +GI+ +GA     L    L   N    I+ +  +       L+++  +G+ IA 
Sbjct: 506 RKLLLGMGIKELGANTILVLINNNL---NSFDIISTLCKNKEAALAKLLKIKGIGEKIAL 562

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRHK 665
            I+E + +      ++             E N +     S +  KK   TG+ +   R  
Sbjct: 563 NIIEAFNDKI---ILDKFNFFKELGFKLEEYNTNYVVDDSFLFGKKFCITGSFEGHSRDV 619

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK---IMNEEQFLFL 717
             E +T+ GA+ +  ++++ D ++VG+ PG KL+KA  LG+K   + + + F+ L
Sbjct: 620 LIEKITKKGAIFNRAVTKRLDFLLVGEKPGLKLQKANNLGIKTFGLFDIKDFVDL 674


>gi|320007473|gb|ADW02323.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331]
          Length = 698

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 200/713 (28%), Positives = 325/713 (45%), Gaps = 82/713 (11%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
            +  + D  YD L R   A     P          P  K+ G        V H++P LSL
Sbjct: 33  GESTLDDDAYDRLVRAIAAYEEEHPQEVLDA---SPTGKVAGGAVSG--DVPHTVPMLSL 87

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E    +   + R   +       +++EPK+DG  +  RY +G       RGDG 
Sbjct: 88  DNVFSAEQFVTWTASVERRIGRPV---AAWSVEPKLDGLAVAARYRQGVLEQLITRGDGT 144

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P  L    P  +E+RGE+ ++   F A N      G  P+ANPRN
Sbjct: 145 AGEDVSHAIGTVLGLPERLG--APATLEIRGEILMTTEQFEAANAVRTEHGAAPFANPRN 202

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG-------QYEMLQKMRCLGFPVNNG 271
            A+G LR  +       + FF +G     +              E+L+ +  +G      
Sbjct: 203 GAAGTLRAKD-RPYRVEMTFFAYGALALPDSGELTDTLAGLPHSEVLEYVAGIGVHTAAD 261

Query: 272 V----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
                R   T   + +   ++ ++R++LP+ IDG+V K D  + Q+  G   R+PRW I+
Sbjct: 262 TAVAPRTVTTVEEVQAGVEDIAALRASLPFGIDGIVIKADLAADQRDAGSGTRAPRWAIA 321

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           +K    +  TRLL ++  +GRTGI+ P A LEPV I G+ ++ ATLHN   I        
Sbjct: 322 YKLPAVEKVTRLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVSYATLHNPADITR------ 375

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                RD+R+GD V+V +AG++IP++   + + R  + QP  FP  CP C S +      
Sbjct: 376 -----RDLRLGDHVMVYKAGDIIPRIEAPVAHLRTGEEQPIEFPEACPRCGSEI------ 424

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                    RCT G  C  + +  + +   RD  +IEGLG  ++         A  ++  
Sbjct: 425 --DASEQRWRCTRGRDC--RLVASISYAAGRDQLDIEGLGTTRVVQLVD----AGLVQDF 476

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
           AD+FTL+R Q  S  ++      G+ S  NL  +I    +  L R   +LG+R  G  ++
Sbjct: 477 ADLFTLERDQLLSLDRM------GETSTDNLLAAIGAAASRPLSRVFCALGVRGTGRSMS 530

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CAV 625
           R +A+++ S    A            D  +L +V  +G   A A+V   Q    +    V
Sbjct: 531 RRIARHFASMDRIAAA----------DVEALQQVDGIGKEKAAAVVRELQELAPLIGKLV 580

Query: 626 EALLKEVSP-----------SIGRHEKNVSS--EIENKKLVF----TGTLQKIQRHKAQE 668
            A +    P             G  E++ +S   +    +V     TG L+K+ R++  E
Sbjct: 581 AAGVNMTEPGATPPPEPGAAQEGEAEESATSGLPLAGMTVVVTGAMTGALEKLSRNEMNE 640

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            + + G   S+ +S++T +++ G+  GSK  KA+ LGV+I   E+F  L+Q +
Sbjct: 641 LIERAGGKSSSSVSKRTSLLVAGEKAGSKRTKAEDLGVRIAAPEEFAELVQAH 693


>gi|323695090|ref|ZP_08109232.1| DNA ligase [Clostridium symbiosum WAL-14673]
 gi|323500845|gb|EGB16765.1| DNA ligase [Clostridium symbiosum WAL-14673]
          Length = 663

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 191/710 (26%), Positives = 318/710 (44%), Gaps = 64/710 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +IE     +  L   +S     YYQ S+ I+ + EYD L      +      +       
Sbjct: 7   AIENKTARIRELVDTLSAAGRAYYQESREIMSNFEYDRLYDELAELEKETGIVFAG---- 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G E+  SL K  H  P LSL K  ++E+L++++                  L  
Sbjct: 63  SPTQNVGYEVMSSLPKERHEKPMLSLNKTKSVEELQEWL------------GDQKGLLSW 110

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  I + YE G    A  RG G  GE ++   +    +P  L++     + +RGE  
Sbjct: 111 KMDGLTIVLTYEGGTLAKAVTRGSGEIGEVITNNAKVFANVP--LNIGFTGQLILRGEAV 168

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI-F 250
           I  +DF  +N ++  V  K Y NPRN  SG +R+LN     R  + F+   L     + F
Sbjct: 169 IRYSDFEKINAQIEDVDAK-YKNPRNLCSGSVRQLNNEITARRNVRFYAFSLVMADGVDF 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              + +  + +   GF V +      T   +     E     S      DGLV   D+  
Sbjct: 228 GNSRKKQFEWLCSQGFEVVDYKEV--TRDTLPGKVQEFSDAVSGNDIPSDGLVLLYDDIE 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             + LG  A+ PR  I+ K+ ++   T L  I+    RTG++ PVA  EPV + G  ++ 
Sbjct: 286 YGQSLGRTAKFPRDSIAFKWMDEIQETTLSYIEWSASRTGLINPVAVFEPVELEGTTVSR 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN   ++ L+           + VGD++ V +A  +IP++ + +      D      
Sbjct: 346 ASVHNLSIMEALE-----------LGVGDKITVYKANMIIPQIAENLTKSGVKD-----I 389

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C +             V +  CT    C A++++    F SRDA NI GL +  
Sbjct: 390 PKHCPVCGADTEIRQI----NDVKSLYCTNP-DCQAKKIKSFTLFASRDALNIGGLSEAT 444

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+           I   ADIF L R +Q    +I  + GFG  S  NL  S+ K    +L
Sbjct: 445 LEKMI----GVGFIHEYADIFHLDRYEQ----EIVTMDGFGQKSYDNLIASVKKASETTL 496

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++SLGI  +G   A+ L + +          N+  A    +   L+ V  +GD++A 
Sbjct: 497 PRVVYSLGISGIGLANAKMLCRRFK---------NDFAAMRKAEKEELVAVDGIGDVLAD 547

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEY 669
           A ++F+ + +N   V+ LL E++      E+      +    V TG+++  + R + QE 
Sbjct: 548 AWIDFFSSEKNNEIVDHLLDELTIEETAEEEEAEGVFDGISFVITGSVEHFKNRKEIQEI 607

Query: 670 VTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
           + Q G  V+  ++ KT+ +I  D  +  SK +KA++LG+ I++E++F+ +
Sbjct: 608 IEQKGGKVTGSVTAKTNYLINNDTASSSSKNKKAKELGIPIISEQEFIEM 657


>gi|323485704|ref|ZP_08091041.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum
           WAL-14163]
 gi|323400967|gb|EGA93328.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum
           WAL-14163]
          Length = 663

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 193/711 (27%), Positives = 321/711 (45%), Gaps = 66/711 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +IE     +  L   +S     YYQ S+ I+ + EYD L      +      +       
Sbjct: 7   AIENKTARIRELVDTLSAAGRAYYQESREIMSNFEYDRLYDELAELEKETGIVFAG---- 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G E+  SL K  H  P LSL K  ++E+L++++                  L  
Sbjct: 63  SPTQNVGYEVMSSLPKERHEKPMLSLNKTKSVEELQEWL------------GDQKGLLSW 110

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  I + YE G    A  RG G  GE ++   +    +P  L++     + +RGE  
Sbjct: 111 KMDGLTIVLTYEGGTLAKAVTRGSGEIGEVITNNAKVFANVP--LNIGFTGQLILRGEAV 168

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI-F 250
           I  +DF  +N ++  V  K Y NPRN  SG +R+LN     R  + F+   L     + F
Sbjct: 169 IRYSDFEKINAQIEDVDAK-YKNPRNLCSGSVRQLNNEITARRNVRFYAFSLVMADGVDF 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              + +  + +   GF V +      T   +     E     S      DGLV   D+  
Sbjct: 228 GNSRKKQFEWLCSQGFEVVDYKEV--TRDTLPGKVQEFSDAVSGNDIPSDGLVLLYDDIE 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             + LG  A+ PR  I+ K+ ++   T L  I+    RTG++ PVA  EPV + G  ++ 
Sbjct: 286 YGQSLGRTAKFPRDSIAFKWMDEIQETTLSYIEWSASRTGLINPVAVFEPVELEGTTVSR 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN   ++ L+           + VGD++ V +A  +IP++ + +      D      
Sbjct: 346 ASVHNLSIMEALE-----------LGVGDKITVYKANMIIPQIAENLTKSGVKD-----I 389

Query: 431 PSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           P  CP+C +   +R +N      V +  CT    C A++++    F SRDA NI GL + 
Sbjct: 390 PKHCPVCGADTEIRQIND-----VKSLYCTNP-DCQAKKIKSFTLFASRDALNIGGLSEA 443

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+           I   ADIF L R +Q    +I  + GFG  S  NL  S+ K    +
Sbjct: 444 TLEKMI----GVGFIHEYADIFHLDRYEQ----EIVTMDGFGQKSYDNLIASVKKASETT 495

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R ++SLGI  +G   A+ L + +          N+  A        L+ V  +GD++A
Sbjct: 496 LPRVVYSLGISGIGLANAKMLCRRFK---------NDFAAMRKAKKEELVAVDGIGDVLA 546

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQE 668
            A ++F+ + +N   V+ LL E++      E+      +    V TG+++  + R + QE
Sbjct: 547 DAWIDFFSSEKNNEIVDHLLDELTIEETAEEEEAEGVFDGISFVITGSVEHFKNRKEIQE 606

Query: 669 YVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
            + Q G  V+  ++ KT+ +I  D  +  SK +KA++LG+ I++E++F+ +
Sbjct: 607 IIEQKGGKVTGSVTAKTNYLINNDTASSSSKNKKAKELGIPIISEQEFIEM 657


>gi|13235515|emb|CAC33719.1| DNA ligase [Rickettsia rickettsii]
          Length = 488

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 194/508 (38%), Positives = 309/508 (60%), Gaps = 23/508 (4%)

Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+ +    R L +FV+  G T +  A  Q ++L K++  GF +N  
Sbjct: 1   FANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNLASSQDQLLTKLKECGFNINEI 60

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            + A++   I ++Y  +K+ R  LPY+IDG+VYK+++F+LQ ++G  AR+PR+  +HKF 
Sbjct: 61  SKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARNPRFATAHKFP 120

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
                T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ ATLHN   I            
Sbjct: 121 AIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEIAR---------- 170

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +D+R+ D V ++RAG+VIPK++ +  ++R  D + F  P FC  C S++          
Sbjct: 171 -KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTETFDTPLFCLSCNSKLHYTPEDI--- 226

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
                RC  GL C AQ  ER++HFVS++A +IEGLG++Q++F          I  P DIF
Sbjct: 227 ---IIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDK----GLISNPLDIF 279

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+ +  +S  K+EN+ G+G  SV NL+ +I K +N+SL RFI++LGIRH+G + A+ LA
Sbjct: 280 FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLA 339

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + + SY NF  ++  +  +  D +  L  +  +GD I   I++F+    NI  ++ L + 
Sbjct: 340 REFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGEI 399

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++      E    S + +K +VFTG+L  I R +A+    +LGA V+  +S  TD+++ G
Sbjct: 400 LNIE-DYKETREQSSLTDKIVVFTGSLPTISRAEAKATAEKLGAKVAVGVSSNTDLVVAG 458

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + GSKL+KA++L +KI++EE++L L++
Sbjct: 459 VDAGSKLKKAKELNIKIIDEEEWLTLIK 486


>gi|197301582|ref|ZP_03166655.1| hypothetical protein RUMLAC_00308 [Ruminococcus lactaris ATCC
           29176]
 gi|197299312|gb|EDY33839.1| hypothetical protein RUMLAC_00308 [Ruminococcus lactaris ATCC
           29176]
          Length = 662

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 188/709 (26%), Positives = 329/709 (46%), Gaps = 67/709 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L + ++     Y Q +  I+ + EYD L    + +         ++  N P   
Sbjct: 15  QQRMRELVELLNRARKAYEQDNTEIMSNYEYDRLYDELEELEKE----LGTKMANSPTVN 70

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G E+   L K  H  P LSL+K   +E L++F+             +    +  K+DG 
Sbjct: 71  VGYEVVSGLPKERHERPMLSLDKTKEVERLKEFL------------GTKKAMISWKLDGL 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + Y+ G+ V A  RG+G  GE ++   +    +P  L +     + +RGE  IS  D
Sbjct: 119 TIVLTYQGGELVKAVTRGNGIEGEVITNNAKVFQNVP--LHIPYQGELVLRGEAVISYKD 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQY 255
           F A+N+++  V  K Y NPRN  SG +R+LN      R + FF   L +  E+ F   + 
Sbjct: 177 FEAINEKIEDVDAK-YKNPRNLCSGSVRQLNNEITAKRNVKFFAFTLVRAEEVDFHNSRM 235

Query: 256 EMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +Q ++  GF V       A T    V+++ +            DGLV   D+ +  + 
Sbjct: 236 YQMQWLKEQGFDVVEHHPVTAETIEEEVAWFAKAIGK---NEIPSDGLVLVYDDIAYGQS 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+ PR   + K+A++   T LL+I+    RTG++ PVA  EPV + G  ++ A++H
Sbjct: 293 LGTTAKFPRDSFAFKWADEIRETTLLEIEWSPSRTGLINPVAVFEPVELEGTTVSRASVH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   ++ L+           + VGD + V +A  +IP++ + +      D      P+ C
Sbjct: 353 NISIMEELE-----------LGVGDTIQVYKANMIIPQIAENLTRSGVKD-----IPTVC 396

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C       +  +T        CT    C A+ ++    FVSRDA NIEGL +  L+ F
Sbjct: 397 PVCGGTTKISMENET----KTLFCTNP-ECQAKHVKAFSLFVSRDAMNIEGLSEATLEKF 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    ++   D+F L R +     +I+++ GFG+ S   L  +I   R  +L R I
Sbjct: 452 ILH----GYVKDFTDLFHLDRYE----EEIKSMDGFGEKSYQKLLRNIENARKTTLARLI 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +SLGI ++G+  A+ + K +          ++           L+ +  +G I+A+  VE
Sbjct: 504 YSLGIPNIGSANAKVICKAFG---------DDPKRAEEATEEELVEIQGIGGIMAKTYVE 554

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQL 673
           ++ +P++      LL EV        ++ S +      V TG+++    R + +  + + 
Sbjct: 555 YFADPKHREIYRRLLDEVELQKEVVTED-SQKFSGINFVITGSVEHFANRAEVKAEIEKR 613

Query: 674 GAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  V+  ++ KT  +I  D  +  SK +KA++LGV I++EE  + +L+Q
Sbjct: 614 GGKVTGSVTSKTGYLINNDVNSTSSKNKKARELGVPIISEETLIGMLEQ 662


>gi|326201860|ref|ZP_08191730.1| DNA ligase, NAD-dependent [Clostridium papyrosolvens DSM 2782]
 gi|325987655|gb|EGD48481.1| DNA ligase, NAD-dependent [Clostridium papyrosolvens DSM 2782]
          Length = 657

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 189/713 (26%), Positives = 321/713 (45%), Gaps = 65/713 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + +    + ++     YYQ +  I+ + EYD L      +      +      N 
Sbjct: 1   MADKIQLMKDKIEILNKAAKAYYQENTEIMPNIEYDKLYDELLELEKETGVVLS----NS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+  +L K  H  P LSL+K   +  L+++I             +    L  K
Sbjct: 57  PSIHVGYELLSNLPKERHEKPMLSLDKTKEVGALKEWI------------GTQKGILSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y+ G  V A  RG G  GE ++   R    +P  ++    + + +RGE  I
Sbjct: 105 LDGLTIVLTYQDGHLVKAVTRGTGEVGEVITNNARVFRNLPVTIA--YKDTLILRGEAII 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FA 251
             +DF+ +N+E+  V  K Y NPRN  SG +R+LN    + R + FF   L K   +   
Sbjct: 163 RYSDFIKINNEISDVDAK-YKNPRNLCSGSVRQLNNKVTSERNVYFFAFSLVKADNVELE 221

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             +   +  ++  GF +       +    I                  DGLV   D  + 
Sbjct: 222 NSRASQMNWLKNQGFDIVEFKEVTSN--DIEETVQWFSQNIEANDLPSDGLVLTFDNIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR  I+ K+ ++   T LL+I+    RTG++ P+A  EPV + G  ++ A
Sbjct: 280 GESLGSTAKFPRDSIAFKWRDEIKETTLLEIEWSASRTGLINPIAIFEPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++GL+           + +GD + V +A  +IP++ + +   R   A     P
Sbjct: 340 SIHNLSIMEGLE-----------LGIGDTIGVYKANMIIPQISENLT--RSGMAP---IP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C  +       K    V    C     C A+Q++   HFVSRDA NIEGL +  L
Sbjct: 384 EECPVCSGKTEI----KQENGVKTLYCVNN-ECLAKQIKSFTHFVSRDAMNIEGLSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           I+  AD+F ++  +     +I  + G G+ S   L  SINK R  +  
Sbjct: 439 EKLIAK----GLIKELADLFHIEMYK----NEIIEMEGLGEKSFNKLIASINKARKTTAI 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++SLGI +VG   A+ + KY+        + NNI    N D+  LI++  +GDI+A++
Sbjct: 491 RLLYSLGIPNVGLSNAKLICKYFK------YDWNNI---ENADFTELIQIGGIGDIMAES 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
            + F+ + +    V  +LKE+               EN   V TG+++  + R + +  +
Sbjct: 542 FISFFADEKKRIIVHDVLKELELE-EVQVSQSEQIFENVNFVITGSVEMFKNRDELKGVI 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            + G  V+  ++ KT+ +I  DN    SK +KA++L + I+ E QF+  +   
Sbjct: 601 EEKGGKVTGSVTSKTNYLINNDNLSNSSKNKKAKELNISIITEAQFVEWINNG 653


>gi|67809897|gb|AAY81980.1| NAD-dependent DNA ligase [Wolbachia pipientis]
          Length = 552

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/591 (38%), Positives = 337/591 (57%), Gaps = 43/591 (7%)

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +    KV H  P LSLE  ++ + + KF+++I RF     ++ I    EPKIDG 
Sbjct: 1   VGAPPDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFL---IEDKIEILCEPKIDGL 57

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
             +  YE G+FV AA RGDG  GEDV+  +  I   P+ L   +   +EVRGE+YIS +D
Sbjct: 58  SFSAIYEDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-GVQGRLEVRGEIYISNSD 116

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           FL LN+         +ANPRNAA+G L++L+     +R L +F + L   +E   K Q E
Sbjct: 117 FLKLNE------NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAE---KSQSE 167

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L K+  LGF VN      ++  G++ +Y +       L YDIDG+VYKV++  LQ +LG
Sbjct: 168 VLNKLEALGFCVNEHQSLTSSLDGMLKFYTKSILSLY-LDYDIDGIVYKVNDLVLQNRLG 226

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+
Sbjct: 227 NTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQ 286

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK            +DIR GD V +KRAG+VIP++V++  + R P+   F FP  CP 
Sbjct: 287 DEIKR-----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPE 335

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S+V +          AA RC    AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+ 
Sbjct: 336 CGSKVRQVEGE------AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFYD 389

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DIFTL+ R       +E   G+G  S+ +L ++I  RR I+L+RFIFS
Sbjct: 390 ----LGLIKQIPDIFTLEER--LDEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFS 443

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G   A  LA YY+SY N+   +  +    + D   L+ +  +G  +A+++  F+
Sbjct: 444 LGIRFIGQVAAELLADYYVSYDNWYNSMIEL----SSDNTELVGIDGIGKKVAESLESFF 499

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               NI  +  L   +   +     + +S + NK +VFTG L  + R +A+
Sbjct: 500 SKEHNIKMLNDLTACLQI-LPVSSNSSNSVLNNKIIVFTGKLLAMSRGEAK 549


>gi|13235527|emb|CAC33654.1| DNA ligase [Rickettsia montanensis]
          Length = 488

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 196/508 (38%), Positives = 308/508 (60%), Gaps = 23/508 (4%)

Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+ +    R L +FV+  G T +  A  Q ++L K++  GF +N  
Sbjct: 1   FANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNLASSQDQLLTKLKECGFNINEI 60

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            + A++   I ++Y  +K+ R  LPY+IDG+VYK+++F+LQ ++G  ARSPR+  +HKF 
Sbjct: 61  SKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRFATAHKFP 120

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
                T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ ATLHN   I            
Sbjct: 121 AIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEIAR---------- 170

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +D+R+ D V ++RAG+VIPK++ +  ++R  D   F  P FC  C S++          
Sbjct: 171 -KDVRIKDYVFLQRAGDVIPKIMGVDFDKRPSDTATFDTPLFCLSCNSKLHYMPEDI--- 226

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
                RC  GL C AQ  ER++HFVS++A +IEGLG++Q++F   +      I  P DIF
Sbjct: 227 ---IIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQIEFLIDN----GLISNPLDIF 279

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+ +  +S  K+EN+ G+G  SV NL+ +I K +N+SL RFI++LGIR +G + A+ LA
Sbjct: 280 FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRRIGEQNAKLLA 339

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           K + SY NF  ++  +  +  D +  L  +  +GD I   I++F+    NI  ++ L   
Sbjct: 340 KEFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGAI 399

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++      E    S + +K +VFTG+L  I R +A+    +LGA V+A +S  TD+++ G
Sbjct: 400 LNIE-DYKETREQSSLTDKIVVFTGSLPTISRAEAKATAEKLGAKVAAGVSSNTDLVVAG 458

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + GSKL+KA++L +KI++EE++L L++
Sbjct: 459 VDAGSKLKKAKELNIKIIDEEEWLTLIK 486


>gi|154498647|ref|ZP_02037025.1| hypothetical protein BACCAP_02637 [Bacteroides capillosus ATCC
           29799]
 gi|150272386|gb|EDM99580.1| hypothetical protein BACCAP_02637 [Bacteroides capillosus ATCC
           29799]
          Length = 656

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 191/711 (26%), Positives = 318/711 (44%), Gaps = 67/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L Q I   D+ YY+Y  PI+ D +YD L     A+      +      + P  ++
Sbjct: 5   ERMRELIQTIKEADEAYYKYDAPIMADLDYDRLYDELAALERETGTILS----SSPTQRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
            GE+  SL  V HS P LS +K  ++ D+ K++                  L  K+DG  
Sbjct: 61  SGEVLESLTAVRHSRPMLSADKCKSVADIHKYL------------GGHEAVLSWKLDGLT 108

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + +RYE GK V A  RGDG  GEDV+  +R +  +P V+    P  +EVRGE  IS  +F
Sbjct: 109 LVLRYENGKLVQAITRGDGLQGEDVTHTVRIMKNVPLVIPCKEP--LEVRGEGVISWKEF 166

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
            ALN  +      PYA+PRN A+G +R+LN  ++  R L+F    L  +  +    ++E 
Sbjct: 167 HALNGTLDE----PYAHPRNLAAGSVRKLNAEEVRERGLSFMAFDLI-SDNLGGSTKWET 221

Query: 258 LQKMRCLGFPVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           L+ +  +GF        A       +    +  +       Y  DGL+++ ++ +  + L
Sbjct: 222 LRFLAQMGFTTVGYSILAAGASEEAVRQAMDFYQPK--EYAYPTDGLIFEFNDLAYGRSL 279

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G        M + K+ + +  T+   +++   RTG+++  A  + V I G  + +A LHN
Sbjct: 280 GATGHHENRMTAFKWPDTRYETKFRRLEVATTRTGMISLTAAFDDVVIDGTTVNHAYLHN 339

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D    L            +  GD + V +A  +IP++      E    +     P  CP
Sbjct: 340 LDNFTRLA-----------LGPGDTISVYKANMIIPQI-----AENKTKSGGCPLPDVCP 383

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S +V   +    +      C    AC A+ + +  HF S+    I+GL +Q L  F 
Sbjct: 384 CCGSTLVVRQSSGGTRQ---LYCENE-ACPARLVRKFVHFCSKTRMEIKGLDEQTLTTFV 439

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       ++   D++ L+R ++          GFG+ S   L +++++RR  +L +FI 
Sbjct: 440 QH----GWVKNYGDLYELERHKEEIL----KTPGFGEKSFARLQNAVDERRTCTLNQFIA 491

Query: 556 SLGIRHVGAEIARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +LGI  VG    R L + +  S+  F + I         D     ++   G ++   I  
Sbjct: 492 ALGIPEVGRHAGRILNRKFGGSWDAFERAIL--------DQFDFTQLEDFGQVMNDNIYC 543

Query: 615 FYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +Y +          L  ++         +  ++    K +V TG L+   R   Q  +  
Sbjct: 544 WYSDEEEAKLWRPALNHITFLKEETTMPEAQNNPFAGKTVVATGKLENYTRDGIQMKLLS 603

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           LGA  ++ +S+KTD +IVG+N GSKL KAQ LGV  + E+QFL +L     
Sbjct: 604 LGARPASSVSKKTDYLIVGENAGSKLTKAQTLGVTTLTEQQFLQMLADAGI 654


>gi|260588405|ref|ZP_05854318.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|260541279|gb|EEX21848.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
          Length = 644

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 173/704 (24%), Positives = 309/704 (43%), Gaps = 67/704 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ ++ +++   +  YYQ S+ I+ + +YD L  +   +             + P   + 
Sbjct: 3   EMRAIIEQLKAANVAYYQESREIMSNYDYDKLYDKLVDMEKE----TGVIYSDSPTQSVA 58

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +    L K  H    LSL+K  ++E L+ +I            +     L  K+DG  +
Sbjct: 59  NDFLDFLPKEKHEKKMLSLDKTKSVETLKSWI------------SDKDGILSWKLDGLTV 106

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y+ G+   A  RG+G +GE ++  +     +P  L +   E + +RGE  IS  DF 
Sbjct: 107 VLTYDNGELQKAVTRGNGTTGEIITQNVSRCKGVP--LKIPYKEKLILRGEAVISYTDFD 164

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEML 258
            +N ++  VG + Y NPRN ASG +R L+ ++   R +   +  L   S    K   +  
Sbjct: 165 RINSQIEDVGAR-YKNPRNLASGSIRLLDASESQKRNVQVIIFRL--ISGSKFKTMDKQF 221

Query: 259 QKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
             +  +GF V        +     V ++              DGLV   +       LG 
Sbjct: 222 NWLSEIGFNVVEHYPVNKDNIEECVKFFKRKIE---NNDIPTDGLVVSYNNTDYGNSLGN 278

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++  R   + K+ ++ A T L  I+    RTG+L PVA  EPV + G  ++ A++HN  
Sbjct: 279 TSKFERHSFAFKWKDEVAETTLKKIEWSPSRTGLLNPVAIFEPVELEGTTVSRASVHNIS 338

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            IK L            + +GD + V ++  +IP++V+         +     P  CPIC
Sbjct: 339 IIKEL-----------KLGIGDTIKVIKSNMIIPQIVE-----NSTKSNNLDIPKQCPIC 382

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
                   N           C     C  + + +  HF  RDA NIEG+ +  +DF  K 
Sbjct: 383 GGDT----NIICSNDTEVLMCMNT-HCPEKLIGKFVHFCERDAMNIEGMSEATVDFLVKK 437

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++   D + L + + T      +I GFG  SV  L+ SI K + +S ER +++L
Sbjct: 438 ----GWLKTFKDFYNLSQYKAT----WMSIPGFGKKSVEKLFLSIEKSKQVSPERLLYAL 489

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI  +G   +R +  ++ ++ +  + +               ++   GD++ ++I ++++
Sbjct: 490 GIPKIGRSQSREIFNHFDTWDDLIKSMKE--------KFDFSKLDGFGDVLNKSIYDWFK 541

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAV 676
                  +E L+K +        + + S + NK  V TG+L K   R+  +  +   G  
Sbjct: 542 EDYKSEEIEQLVKILVFEEKIKTEELLS-LTNKTFVITGSLNKFSNRNDLKSTIETHGGK 600

Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V+  ++ KT  +I  D  +  SK +KA++LG+ I++EE+FL LL
Sbjct: 601 VTGSVTSKTHYLINNDTTSNSSKNKKAKELGIPIISEEEFLTLL 644


>gi|254430924|ref|ZP_05044627.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001]
 gi|197625377|gb|EDY37936.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001]
          Length = 667

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 167/527 (31%), Positives = 261/527 (49%), Gaps = 40/527 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + E  R  ++ L++ ++     YY    P++ D  YD L R    +  A P+L R   P+
Sbjct: 4   APEPLRDRIAELQRLLTQAAHAYYVLDAPVMEDPVYDRLYRELLELEQAHPELIR---PD 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIF 127
            P  ++GG        V H I  LSL+  ++ E+L  +  R+ +   +          + 
Sbjct: 61  SPTQRVGGSPAEGFRSVEHRIALLSLDNAFSTEELEAWYARLLKVLDRTPAAGEPLPDLA 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186
              E KIDG  + + Y +G    AA RGDG  GE+++A +R I ++P  L L   P  +E
Sbjct: 121 MVGELKIDGNALALSYREGLLERAATRGDGERGEEITANVRTIQSVPLRLRLQAPPAWVE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-- 243
           VRGE  I    F A+N E +A G   +ANPRNA +G LR+L+P  +  R L+FF + L  
Sbjct: 181 VRGEALIPDGTFAAINAERLARGEPAFANPRNACAGTLRQLDPQVVADRRLDFFAYTLHL 240

Query: 244 ------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
                 G         Q+E L  +R  GF VN           + +++   +  R  LPY
Sbjct: 241 PDDWQPGPGDPPRPSSQWESLAWLRAAGFKVNPNAELLADLAAVEAFFTRWEPERRQLPY 300

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
             DG+V K+D+  LQ   G   ++PRW I+ K+A ++A +RLL +  Q+GRTG++TPVA 
Sbjct: 301 ATDGVVVKLDDLRLQADAGFTQKAPRWAIALKYAAEEAPSRLLRLSCQVGRTGVVTPVAE 360

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
            EPV + G  ++ ATLHN D +  L           D+  GD ++V++AGE+IP+VV ++
Sbjct: 361 FEPVALAGTSVSRATLHNADRLAEL-----------DLHAGDTIVVRKAGEIIPEVVRVL 409

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R   A+    P  CP C S +VR+         AA RC    +C A     L+H+VS
Sbjct: 410 PELRPAAARRLELPRHCPECGSELVREAGE------AATRCVNS-SCPAILRGALRHWVS 462

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524
           + A +++GLG + ++           +R  A ++ L      S  ++
Sbjct: 463 KAALDVDGLGSKLIEQLVDR----GLVRSIAGLYRLDAALLASLERM 505


>gi|319760626|ref|YP_004124564.1| DNA ligase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039340|gb|ADV33890.1| DNA ligase [Candidatus Blochmannia vafer str. BVAF]
          Length = 598

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 205/606 (33%), Positives = 319/606 (52%), Gaps = 46/606 (7%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
             +  YY  ++    D EYD   +    +   +P L     P   L KI   +  +  +V
Sbjct: 17  QWEYAYYLKNESETSDEEYDKTLQELRQLEFEYPCLITENSPTKFLGKI---LENNFRQV 73

Query: 90  THSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
            H  P LSL  + N   L  F  RI Y+      + SI +  E KIDG  I++ Y+ GK 
Sbjct: 74  YHRAPMLSLNSVMNKSQLLLFNDRIEYKLRDNNQNKSIIYCCELKIDGVAISLLYKSGKL 133

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKNDFLALNDE 204
           + AA RGDG  GEDV+  +R + +IP  L  N    +P ++E+RGE++ISK  FL LN +
Sbjct: 134 LKAATRGDGKIGEDVTKNVRVVSSIPECLRKNDGMQLPYLLEIRGEIFISKLCFLKLNQK 193

Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--TSEIFAKGQYEMLQKM 261
           ++  G KP++N RNAASG LR+LNP    +R L F+ +G+     ++      ++ LQ  
Sbjct: 194 ILKSGNKPFSNARNAASGSLRQLNPNITASRSLMFYCYGISYYVGADELPNSHWDRLQLC 253

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LG P+N+ ++  N    ++ YY+ +  IRS L YDIDG+V KVD    QK+LG   R+
Sbjct: 254 LKLGIPINDHIQLVNGVDKVLKYYDHITYIRSNLKYDIDGIVVKVDNCVFQKKLGYGTRA 313

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           P W I++KF  +   T+L DI  ++GRTG++TP+  ++P+ I   +I   ++HN + I+ 
Sbjct: 314 PHWAIAYKFPAESKLTQLNDIIFKVGRTGLITPIVYIKPIVINNVVIKKVSMHNVNEIRR 373

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
            +           +  GD VLV+R+G+VIPK+V +I+++R  D +  + P FCP+C + +
Sbjct: 374 FN-----------LMFGDTVLVQRSGDVIPKIVKVILSKRTNDMKVITLPQFCPVCGTLL 422

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           +      +       RC   L C AQ+   LKHFVSR A NI G+G++ ++         
Sbjct: 423 ITSNCRSS-----VLRCPAKLICLAQRKSMLKHFVSRKAMNIHGMGEKVINQLVDKN--- 474

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +  P D F L R          N+ G+G  SV  L  SI+  ++ +L  FI++LGI +
Sbjct: 475 -LVFSPVDFFYLNRENLLF-----NLDGYGVKSVEKLLRSIDLAKHTTLANFIYALGIPN 528

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG  +A SLA  Y + +             + D+ SL  +  VGD IA  I  F+++P N
Sbjct: 529 VGESVANSLAVKYKTIEKL----------ISADFQSLSTLQYVGDSIAFTIYSFFKDPIN 578

Query: 622 ICAVEA 627
           +  ++ 
Sbjct: 579 LKNIKD 584


>gi|291549033|emb|CBL25295.1| DNA ligase, NAD-dependent [Ruminococcus torques L2-14]
          Length = 652

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 177/714 (24%), Positives = 320/714 (44%), Gaps = 69/714 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  ++    +  L + ++     Y Q +  I+ + EYD L      +         +   
Sbjct: 1   MDEQKEMNHMRELVELLNRARRSYEQENTEIMSNYEYDKLYDELLELEEK----LGTRMA 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P   +G E+   L K  H  P LSL+K  ++E L++F+                  + 
Sbjct: 57  NSPTVNVGYEVLSELPKERHERPMLSLDKTKDVERLKEFLGGQKAL------------IS 104

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y+ G+ V A  RG+G  GE ++   +    +P  L +     + +RGE 
Sbjct: 105 WKLDGLTVVLTYQNGEIVKAVTRGNGVIGEVITNNAKVFKNVP--LKIPYQGELVLRGEA 162

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI- 249
            IS  DF  +N+E+  V  K Y NPRN  SG +R+LN      R + F+   L +   + 
Sbjct: 163 VISYKDFEKINEEIEDVDAK-YKNPRNLCSGSVRQLNNEITAKRNVRFYAFTLVRAEGVD 221

Query: 250 FAKGQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F   +   +Q +   GF V  N+ V +      +  +  E++          DGLV   D
Sbjct: 222 FQNSRKYQMQWLENQGFDVVENHEVTRDTIEEEVAWFAREIEH----NEVPSDGLVLVYD 277

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +  + LG  A+ PR   + K+A++  +T+LL+I+    RTG++ PVA  EPV + G  
Sbjct: 278 DIAYGQSLGTTAKFPRDSFAFKWADEIRNTKLLEIEWSPSRTGLINPVAVFEPVELEGTT 337

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A++HN   ++ L+           + VGD + V +A  +IP++ + +      D   
Sbjct: 338 VSRASVHNISIMEELE-----------LGVGDEIQVYKANMIIPQIAENLTRSGVKD--- 383

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C       +  +T        CT    C A+ ++    FVSRDA NIEGL 
Sbjct: 384 --IPKVCPVCGGETKISMENET----KTLYCTNP-KCQAKHVKSFALFVSRDAMNIEGLS 436

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +  L+ F         ++   D+F L   +     +I  + GFG+ S   L  SI K R 
Sbjct: 437 EATLEKFIFH----GYVKDFTDLFHLDNYR----DEIMTMDGFGEKSFLKLQSSIEKARK 488

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L R ++ LGI  +G+  A+ + +   +      +   ++     + +    +  VG +
Sbjct: 489 TTLARLVYGLGIPGIGSANAKVICRALGN------DSQRVLQAEEAELVE---IQGVGAV 539

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKA 666
           +A++ V++++   +   +   L +            S +      V TG+++    R + 
Sbjct: 540 MAKSYVDYFKEEEHQE-IYKRLLDEVELEEEEVTEDSQKFAGVNFVITGSVEHFANRAEV 598

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + + G  V+  ++ KT+ +I  D  +  SK +KA+ LGV I++E+ FL +L
Sbjct: 599 KAEIEKRGGKVTGSVTSKTNYLINNDVNSTSSKNKKARDLGVPIISEKDFLEML 652


>gi|4235380|gb|AAD13193.1| NAD-dependent DNA ligase [Thermus sp. Vil3]
          Length = 505

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 184/547 (33%), Positives = 292/547 (53%), Gaps = 46/547 (8%)

Query: 70  DPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P  ++G +   +    + H     SL+  + +E++R F  RI R   +K      +
Sbjct: 2   SPDSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFTLEEVRTFEERIERALGRK--GPFVY 59

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T+E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  IPTIPR L   +PE +EVR
Sbjct: 60  TVEHKVDGLSVNLYYEEGILVWGATRGDGETGEEVTQNLLTIPTIPRRLK-GVPERLEVR 118

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKT- 246
           GEVY+    FL LN+E+   G K + NPRNAA+G  R+ +P    R  L    + LG   
Sbjct: 119 GEVYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSFRQKDPRITARRGLRATFYALGLGL 178

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E   K Q ++L  +R  GFPV +G  +A    G+   Y      R +LP++ DG+V K+
Sbjct: 179 EESGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKL 238

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           DE SL ++LG  AR+PR+ I++KF  ++  T L  + +Q+GRTG +TPV  LEPV I G+
Sbjct: 239 DELSLWRELGYTARAPRFAIAYKFPAEEKETALFQVVLQVGRTGQVTPVGILEPVFIEGS 298

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++  TLHNE YI+ L           D+R+G+ VLV  AG VIP+V+ ++  +R  + +
Sbjct: 299 EVSRVTLHNESYIEDL-----------DVRIGEWVLVHNAGGVIPEVLRVLKEKRTGEER 347

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +I GL
Sbjct: 348 PIRWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIGGL 398

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++   +       ++  AD++ L+        ++      G  S  NL   I K +
Sbjct: 399 GEKLIEKLLEK----GLVKDVADLYRLKEEDLVGLERM------GKKSAQNLLRQIEKSK 448

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              LER +++LG+  VG  +AR+LA ++ +     +               L++V  VG+
Sbjct: 449 ARGLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEASL----------EELLQVEEVGE 498

Query: 607 IIAQAIV 613
           + A+ I 
Sbjct: 499 LTARGIY 505


>gi|187918415|ref|YP_001883978.1| NAD-dependent DNA ligase LigA [Borrelia hermsii DAH]
 gi|254781263|sp|B2S0Q2|DNLJ_BORHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119861263|gb|AAX17058.1| NAD-dependent DNA ligase [Borrelia hermsii DAH]
          Length = 669

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 199/716 (27%), Positives = 349/716 (48%), Gaps = 62/716 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE    E+  L+  I   +  YY  S P + D  YD    R   +   +P+       + 
Sbjct: 2   IEDVEDEILRLKNIIKRWNREYYVDSSPSVGDLTYDKALLRLQDLESKYPEYKTL---DS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  + G ++     +V HS P LSL+K ++I+ L  +I ++         ++   ++EPK
Sbjct: 59  PTFRFGSDLLNDFEEVKHSFPILSLDKTYDIKGLSLWIEKMVLESAISGLHT-GISVEPK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I + Y+ G    A  RGDG  G DV+  ++ I  +P  L ++    + +RGE+YI
Sbjct: 118 IDGCSIVLHYKDGILEKALTRGDGRVGNDVTENVKTIRNVP--LRIDEKIELVLRGEIYI 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAK 252
           +K +FL +N  +    + PY N RN ASGILRR++  ++    L+ FV+ +  +S     
Sbjct: 176 TKENFLKINRTL----KNPYVNARNLASGILRRISSKEVANFPLDIFVYDILYSSLKLNT 231

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
              +   K++  GF VN             GI+++  +++++R +  Y+IDG+V K+D F
Sbjct: 232 SH-DAFDKLKQFGFKVNPFCEFFGGKNLEAGIIAHVKKIEALRDSFEYEIDGVVLKIDSF 290

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            L+K LG  +  P+W I++KF      ++++DI +Q+GR+G +TPVA +E V + GA IT
Sbjct: 291 ILRKILGSTSHHPKWSIAYKFESCTGMSKVVDIVVQVGRSGKITPVAHVEKVLVAGASIT 350

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NA+LHN+DYI  +            + VGD V++ R G+VIP V  +I          F 
Sbjct: 351 NASLHNQDYIDFV-----------GLNVGDIVVISRRGDVIPAVDLVIEKL---AVGSFK 396

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            PS CP C+  ++++         A   C     CS + +E++K+F S+   NI GL ++
Sbjct: 397 IPSNCPSCKMTLIKE--------GAHLFCVN-RHCSCRIIEQVKYFCSKKCMNIVGLSEK 447

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++F F+ +     I    +++T       +  ++ N+ GF    + NL  SI   ++  
Sbjct: 448 TIEFLFEKK----FISSEVELYTF------NCDRLINLKGFNLKRINNLKRSIEDSKSRP 497

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             + +  +GI+ +G      L    L   N    I+ +  +       L+++  +G+ IA
Sbjct: 498 FRKLLLGMGIKDLGENTILVLINNNL---NSFDTISTLCKNKEAALAKLLKIKGIGERIA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRH 664
             I+E + +      ++         +   E N +       +  KK   TG+ +   R 
Sbjct: 555 LNIIEAFND---KTILDKFNFFKELGLKMEEDNTNDAVYDSFLFGKKFCITGSFKGYSRD 611

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK---IMNEEQFLFL 717
              E +T+ GAV S  +++  D ++VG+  G K++KA  LG+K   + + + F+ L
Sbjct: 612 VLIEKLTKKGAVFSRSVTKCLDFLLVGEKFGLKVQKANNLGIKTFSLFDIKDFVDL 667


>gi|153813883|ref|ZP_01966551.1| hypothetical protein RUMTOR_00089 [Ruminococcus torques ATCC 27756]
 gi|331088166|ref|ZP_08337086.1| DNA ligase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848279|gb|EDK25197.1| hypothetical protein RUMTOR_00089 [Ruminococcus torques ATCC 27756]
 gi|330408822|gb|EGG88285.1| DNA ligase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 653

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 182/717 (25%), Positives = 319/717 (44%), Gaps = 72/717 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  ++  K +  L + ++     Y Q +  I+ + EYD L     ++         +   
Sbjct: 1   MEKKKKTKRMRELVELLNKARRAYEQENTEIMSNFEYDRLYDELLSLEKE----LETTLA 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +G E+   L K  H  P LSL+K  ++E LR+F+                  + 
Sbjct: 57  SSPTVNVGYEVLSELPKERHETPMLSLDKTKDVERLREFL------------GDQQAVIS 104

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I + YE G    A  RG+G  GE V+   +    +P  LS+     + +RGE 
Sbjct: 105 WKMDGLTIVLTYENGVLKKAVTRGNGEIGEVVTNNAKVFRNVP--LSIPFKGELVLRGEA 162

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI- 249
            IS  DF  +N+E+     K Y NPRN  SG +R+LN      R + F+   L K   + 
Sbjct: 163 VISYKDFEKINEEIGDADAK-YKNPRNLCSGSVRQLNNEVTAKRNVRFYAFTLVKADNVD 221

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           F   +   L+ ++  GF V              +  +   ++          DGLV   D
Sbjct: 222 FENSRAYQLKWLQEQGFDVVEHHLVTRDTVGDEVAWFAEHIRE----NEVPSDGLVLIYD 277

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + S  + LG  A+ PR   + K+ ++   T + +I+    RTG++ PVA  +PV + G  
Sbjct: 278 DISYGQSLGTTAKFPRDSFAFKWEDEVRKTTIREIEWSPSRTGLINPVAIFDPVELEGTT 337

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A++HN   ++ L+           + +GD V V +A  +IP++ + +       +  
Sbjct: 338 VSRASVHNISIMEELE-----------LGIGDTVTVYKANMIIPQIAENLTR-----SGV 381

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C+      +   T        C     C A+ ++    F SRDA NIEGL 
Sbjct: 382 SEIPKECPVCKKPTKISMENNT----KTLYCMNP-KCQAKHVKSFSLFASRDAMNIEGLS 436

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +  L+ F         ++   DIF L R +     +I+ + GFG+ S  NL   I   R 
Sbjct: 437 EATLEKFI----INGYVKDFTDIFHLDRYE----AEIKTMEGFGEKSYENLRKRIENARK 488

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L R I+SLGI ++G   A+ + +         ++   +I    ++      +  VG +
Sbjct: 489 TTLPRLIYSLGIPNIGISNAKMICRALG------EDPKRVIRATEEEL---SAISGVGGV 539

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKA 666
           IA   VE++++  ++   + LLKEV   + +       +      V TG+++    R + 
Sbjct: 540 IAGTFVEYFKDTAHVDVFDRLLKEV--ELTKETSEEDQKFAGVNFVITGSVEHFVNRAQV 597

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKIMNEEQFLFLLQQ 720
           +E + + G  V+  ++ KT+ +I  D  GS   K +KA++LG+ I++EE FL ++ +
Sbjct: 598 KEEIEKRGGKVTGSVTSKTNYLINND-TGSGTAKNKKARELGIPIISEEDFLQMMNE 653


>gi|282864620|ref|ZP_06273675.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
 gi|282560559|gb|EFB66106.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
          Length = 709

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 196/720 (27%), Positives = 321/720 (44%), Gaps = 89/720 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
            + ++ D  YD L R   A     P    +     P  K+ G   +    V H++P LSL
Sbjct: 40  GESLLDDDAYDRLARGIAAYEAEHPQEVLAA---SPTGKVAGGAAVG--DVPHTVPMLSL 94

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E    +   + R   +       +++EPK+DG  +  RY++G+      RGDG 
Sbjct: 95  DNVFSAEQFVTWTASVERRIGRPV---AAWSVEPKLDGLAVAARYQQGRLDRLITRGDGT 151

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P  L  N P  +EVRGE+ ++   F A N    A G  P+ANPRN
Sbjct: 152 AGEDVSHAIGTVLGLPERL--NEPATLEVRGEILMTDEQFDAANAARTAHGAAPFANPRN 209

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG-------QYEMLQKMRCLGFPVNNG 271
            A+G LR  +       + FF +                     E+L+ +  LG      
Sbjct: 210 GAAGTLRAKD-RPYRVEMTFFAYAALPLPGSGTSAETLTGLPHSEVLRHVAGLGVRTAAD 268

Query: 272 V----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
                R A T   + +   ++   R+TLP+ IDG+V K D  + Q+  G   R+PRW I+
Sbjct: 269 TAVAPRTAGTVEEVQAGVEDIAGQRATLPFGIDGIVIKADLAADQRDAGTGTRAPRWAIA 328

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           +K    +  TRLL ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I        
Sbjct: 329 YKLPAVEKVTRLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------ 382

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                RD+R+GD+V+V +AG++IP++   + + R  + +P  FP  CP C S +      
Sbjct: 383 -----RDLRLGDQVMVYKAGDIIPRIEAPVAHLRTGEERPIEFPQSCPQCGSEI------ 431

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                    RC  G  C  + +  + +   RD  +IEGLG  ++         A  +   
Sbjct: 432 --DTSEQRWRCVRGRDC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADF 483

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
           AD+FTL+R Q     ++      G+ S  NL  ++   R+  L R   +LG+R  G  ++
Sbjct: 484 ADLFTLEREQLLGLERM------GETSTDNLLAAVETARSRPLSRVFCALGVRGTGRSMS 537

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CAV 625
           R +A+++ +    A            D  +L RV  +G   A A+V        +    V
Sbjct: 538 RRIARHFATMDRIAAA----------DTEALQRVDGIGKEKAAAVVAELAELAPLIAKLV 587

Query: 626 EALLKEVSPSIGRHEKNVSS--------------------EIENKKLVF----TGTLQKI 661
            A +    P         +                      ++   +V     TG L+K+
Sbjct: 588 AAGVNMTEPGATPPPDPGTEADEERAGAEGVSEGAGGTGLPLDAMTVVVTGAMTGVLEKL 647

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R++  E + + G   S+ +S++T +++ G+  GSK  KA+ LGV+I   ++F  L+  +
Sbjct: 648 SRNEMNELIERAGGKASSSVSKRTSLLVAGEKAGSKRTKAEGLGVRIATPDEFAELVGSF 707


>gi|297196402|ref|ZP_06913800.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720877|gb|EDY64785.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 715

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 205/736 (27%), Positives = 329/736 (44%), Gaps = 93/736 (12%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI-GGEMNLSLFK 88
                YY+  +  + D  YD L R   A     PD      P  P  K+ GG +      
Sbjct: 30  RASAAYYETGESTLDDDAYDRLVRGIAAYEQEHPD---ETSPASPTGKVAGGAVVAG--D 84

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H++P LSL+ +++ E L  +   + R   +       +++EPK+DG  +  RYE+G  
Sbjct: 85  VPHTVPMLSLDNVFSAEQLVAWTASVER---RTGPPVEEWSVEPKLDGLAVAARYEEGAL 141

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
                RGDG +GEDVS  I  I  +PR L+   P  +E+RGEV +++  F   N   +  
Sbjct: 142 TRLITRGDGTAGEDVSHAIGTIVGLPRTLAE--PVTLEIRGEVLMTEEQFERANTVRVEH 199

Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK--------GQYEMLQK 260
           G  P+ANPRN A+G LR  +    T  + FF +G         +        G   +++ 
Sbjct: 200 GGAPFANPRNGAAGTLRAKD-RAYTVEMTFFGYGALAVPASGEELTGRLGEWGHGRIMRY 258

Query: 261 MRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +  LG    +      R   T   I +  +E+ + R  LP+ IDG+V K D  + Q   G
Sbjct: 259 VADLGVHTADSTAVAPRVLTTTEAIQARIDEIAAARPGLPFGIDGIVIKADSAADQAAAG 318

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW +++K    +  T LL ++  +GRTGI+ P A LEPV I G+ +T ATLHN 
Sbjct: 319 FGSRAPRWAVAYKLPAVEKVTTLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVTYATLHNP 378

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I             RD+R GD+V+V +AG++IP+V   + + R    QP  FP  CP 
Sbjct: 379 ADITR-----------RDLRTGDKVMVYKAGDIIPRVEAPVAHLRTGAEQPVVFPEVCPQ 427

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +               RC  G  C    +  + +   RD  +IEGLG  ++     
Sbjct: 428 CGSEI--------DTSEQRWRCVRGRDC--HVVASVSYAAGRDQLDIEGLGVTRVVQLVD 477

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +R  AD+FTL R Q     ++      G+ S  NL  +I+  R   L R   +
Sbjct: 478 ----AGLVRDLADLFTLTREQLLGLERM------GETSTDNLLAAIDTARTRPLSRVFCA 527

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG+R  G  ++R +A+Y+ + ++              D  +L +V  +G   A+ +V   
Sbjct: 528 LGVRGTGRSMSRRIARYFAAMEHIRAA----------DAETLQQVDGIGVEKARTVVAEL 577

Query: 617 QNPRNI--CAVEALLKEVSPSIGRHEKNVSS----------------------EIENKKL 652
           +    +    V A +    P                                  +    +
Sbjct: 578 EELAPLIDRLVAAGVNMTEPGATPPAARAEDGAGAEGEGQDTGAGASTAGGAGPLSGMTV 637

Query: 653 VF----TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           V     TG L+K+ R++  E + + G   S+ +S++T +++ G+N GSK +KA+QLG +I
Sbjct: 638 VVTGAMTGALEKLSRNQMNELIERAGGKSSSSVSKRTSLLVAGENAGSKRDKAEQLGTRI 697

Query: 709 MNEEQFLFLLQQYNTT 724
              ++F  ++  +  T
Sbjct: 698 ATPDEFAAIVADFLDT 713


>gi|4235376|gb|AAD13191.1| NAD-dependent DNA ligase [Thermus filiformis]
          Length = 546

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 186/591 (31%), Positives = 297/591 (50%), Gaps = 48/591 (8%)

Query: 72  NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G      +   V H     SL+  +  E++  F  R+ R   +K      +T+
Sbjct: 1   DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLDRALGRK--RPFLYTV 58

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGD             IPTIPR L   +P+ +EVRGE
Sbjct: 59  EHKVDGLSVNLYYEEGVLVFGATRGDXXXXXXXXXXXXTIPTIPRRLK-GVPDRLEVRGE 117

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SE 248
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P     R L    + LG    E
Sbjct: 118 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLEE 177

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K QYE+L  ++  GFPV +G  +A    G+   Y      R  LP++ DG+V K+D+
Sbjct: 178 SGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYQAXXXKRHALPFEADGVVVKMDD 237

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +L  +LG  AR+PR+ I++KF  ++  TRLLD+D Q+GRTG +TPV  LEPV + G+ +
Sbjct: 238 LTLWGELGYTARAPRFAIAYKFPAEENETRLLDVDFQVGRTGRVTPVGILEPVFLEGSEV 297

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  + +P 
Sbjct: 298 SRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERPI 346

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C  R++++           HRC   L C A++ E ++HF SR A +I+GLG+
Sbjct: 347 RWPETCPECGHRLLKE--------GKVHRCPNPL-CPAKRFEAIRHFPSRKAMDIQGLGE 397

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       ++  AD++ L++       ++      G+ S  NL   I + +  
Sbjct: 398 KLIERLLEK----GLVKDVADLYRLRKEDLVGLERM------GEKSAQNLLRQIEESKRR 447

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +++LG+  VG  +AR+LA  + +     +     +    +             + 
Sbjct: 448 GLERLLYALGLPGVGEVLARNLAARFGNMDRLLEASLEELLEVEEVGE----------LT 497

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           A+AI+E  ++P     V  L +       + +      ++    V TG L 
Sbjct: 498 ARAILETLKDPAFRDLVRRLKEAGVEMEAKEK--GGEALKGLTFVITGELS 546


>gi|203284458|ref|YP_002222198.1| DNA ligase [Borrelia duttonii Ly]
 gi|254781262|sp|B5RMA6|DNLJ_BORDL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|201083901|gb|ACH93492.1| DNA ligase [Borrelia duttonii Ly]
          Length = 669

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 194/705 (27%), Positives = 341/705 (48%), Gaps = 59/705 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  + E+ SL   I   D  YY  S P + D  YD    R   + + +P+       + P
Sbjct: 3   KDIKDEILSLRDAIKKWDREYYVDSSPTVGDVTYDKALLRLQYLENRYPEYKTL---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K G ++     +V HS P LSL+K +++++L  ++ ++           +  + EPKI
Sbjct: 60  TLKFGSDLLNDFKEVEHSYPILSLDKAYDVKELLLWVEKMS-LEGSNLGFDMGISAEPKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y+ G    A  RGDG  G +V   +R I  +P  +   +   + +RGE+YI+
Sbjct: 119 DGCSIVLYYKDGILEKALTRGDGRFGNNVIENVRTIKNVPLCIGERV--ELVLRGEIYIT 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKG 253
           K DFL +N  +       Y N RN  SGILRR+N  ++    L+ FV+ +  +S +    
Sbjct: 177 KKDFLKINHTLDDS----YINARNLTSGILRRINSREVVNFPLDIFVYDILYSS-LELNT 231

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTF---HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            ++   K++  GF +N   +          I++Y  E++  R    Y+IDG+V KVD+F 
Sbjct: 232 NHDAFDKLKHFGFKLNPFCKFFCGKNLGENIINYVKEIEEQRERFEYEIDGVVLKVDDFR 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L+  LG  +  P+W I++KF   +A ++++DI +Q+GR+G +TPVA +E V I GA IT+
Sbjct: 292 LRDVLGYTSHHPKWSIAYKFESLRAVSKVIDIVVQVGRSGKITPVANIEKVLIAGAFITS 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN+DYI  +            + V D V + R G+VIP V  ++      +   F  
Sbjct: 352 ASLHNQDYIDSI-----------GLNVKDVVAISRRGDVIPAVELVVEKLSVGN---FKI 397

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P++CP C+  ++++         A   C   + C  + +  +K+F S+   NI GL ++ 
Sbjct: 398 PNYCPSCKKSLIKE--------GAHLFCVN-IHCPLKIMGHIKYFCSKKCMNIVGLSEKT 448

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++F F        I    D++T          ++  + GF    V  L  SI + +N   
Sbjct: 449 IEFLFNMN----FISSEIDLYTF------DFDRLIGLKGFNFKRVNKLKRSIEESKNRPF 498

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ + ++GI+ +G            +  N    I+ +   N +  + L+ +  +G+ IA 
Sbjct: 499 KKLLLAMGIKDLGINTILL---LINNNLNSFDAISLLCQDNKNALVKLLDIKGIGERIAF 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-----SSEIENKKLVFTGTLQKIQRHK 665
            I+  + +      ++             E ++     SS +  KK   TG+  +  RH 
Sbjct: 556 NIIRAFNDKI---ILDKFNFFKGLGFKMQEDSINCVVDSSFLFGKKFCITGSFDEYPRHV 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             + +T+ GA+ ++ +SR  D ++VG +PG KL+KA  LG+KI++
Sbjct: 613 LIDKITKKGAIFNSSVSRYLDFLLVGKSPGLKLKKANNLGIKILS 657


>gi|321309600|ref|YP_004191929.1| DNA ligase [Mycoplasma haemofelis str. Langford 1]
 gi|319801444|emb|CBY92090.1| DNA ligase [Mycoplasma haemofelis str. Langford 1]
          Length = 662

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 184/706 (26%), Positives = 332/706 (47%), Gaps = 53/706 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++ + +L +E+   ++ YY    P   D  YD   R    + H +P+       + P 
Sbjct: 2   NIKEIIENLRKELKDLEEAYYAGD-PKESDEVYDFKLRTLLNLEHKYPEYKTE---DSPS 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           N++G  +N    KV H  P LSL   +N E+L+ F  +  +     +   + + LEPK+D
Sbjct: 58  NRVGFYLNPENIKVHHDFPMLSLNNAFNNEELQSFFNQCEK-----ERGELEYFLEPKVD 112

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ Y KG    A  RGDG  GED+++ I  I +IP  + +   + I +RGE+YI K
Sbjct: 113 GASISLIYRKGYLHQAISRGDGEIGEDLTSKILQINSIP--IKIESEDDITIRGEIYIRK 170

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
           ++F A          K +AN RN  +G LR     +I++  L    + + +  E+    Q
Sbjct: 171 SNFEA--QRYDESSSKSFANHRNFVAGTLRLKKSEEISKKGLRVKAYSIVRAEEVGIDKQ 228

Query: 255 YEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            ++++++R LG           +     I S+    + I+ T     DGLV KV+E S  
Sbjct: 229 SQIIERIRELGLESHDPKETLISGNKEEIYSFIKAFEDIKKTSDIPYDGLVIKVNETSKW 288

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + +G  ++ P+W I++K+      ++LL I   +GRTG +T  A++EPV + G+ +  AT
Sbjct: 289 EDIGYTSKFPKWAIAYKYPSLVKESKLLKIIPTVGRTGKITYSAQVEPVELDGSTVQFAT 348

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN +YI  L           D+RVGD V + ++GE++P+++      R  D + +   +
Sbjct: 349 LHNANYITEL-----------DLRVGDYVSIYKSGEIVPRIIGFSRERRSEDLERWIPST 397

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S ++   N      ++   C     C  ++  +  +F +R   NIEGL    + 
Sbjct: 398 HCPSCNSELITKQN------LSTQYCPNK-DCLEKKYAQFTYFSARGMANIEGLSIHIIM 450

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      ++   DI+ + + + T        L   +  +  L  SI+K RN    +
Sbjct: 451 KLHS----LGILQNLDDIYKIHQHRDTILNAD---LRIKEKLLNKLIASIDKSRNRESHK 503

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +  LGI  +G E+A  +  ++ S       I+ +++ + ++    + +  +G+  A++I
Sbjct: 504 ILCGLGIEFIGEEVANLIFGHFGS-------IDEVLSASKEEL---MSIDGIGEKCAESI 553

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +++     NI  V+ L ++         + ++S +  K++V TG   KI R +    +  
Sbjct: 554 IQWSSQQENIDLVKRLKEQGLFKNHSTFEVINSFVRGKRVVITGKF-KISREELSSRLRN 612

Query: 673 L-GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             G  +   +S K D +I G+  GSKL KA+ L ++I+ E     L
Sbjct: 613 NYGVKIVGNISSKVDYLIAGEGAGSKLIKAKDLNIQILTESDITQL 658


>gi|317502015|ref|ZP_07960199.1| DNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896695|gb|EFV18782.1| DNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 644

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 181/708 (25%), Positives = 315/708 (44%), Gaps = 72/708 (10%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L + ++     Y Q +  I+ + EYD L     ++         +   + P   +G 
Sbjct: 1   MRELVELLNKARRAYEQENTEIMSNFEYDRLYDELLSLEKE----LETTLASSPTVNVGY 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E+   L K  H  P LSL+K  ++E LR+F+                  +  K+DG  I 
Sbjct: 57  EVLSELPKERHETPMLSLDKTKDVERLREFL------------GDQQAVISWKMDGLTIV 104

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YE G    A  RG+G  GE V+   +    +P  LS+     + +RGE  IS  DF  
Sbjct: 105 LTYENGVLKKAVTRGNGEIGEVVTNNAKVFRNVP--LSIPFKGELVLRGEAVISYKDFEK 162

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQYEML 258
           +N+E+     K Y NPRN  SG +R+LN      R + F+   L K   + F   +   L
Sbjct: 163 INEEIGDADAK-YKNPRNLCSGSVRQLNNEVTAKRNVRFYAFTLVKADNVDFENSRAYQL 221

Query: 259 QKMRCLGFPVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           + ++  GF V              +  +   ++          DGLV   D+ S  + LG
Sbjct: 222 KWLQEQGFDVVEHHLVTRDTVGDEVAWFAEHIRE----NEVPSDGLVLIYDDISYGQSLG 277

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PR   + K+ ++   T + +I+    RTG++ PVA  +PV + G  ++ A++HN 
Sbjct: 278 TTAKFPRDSFAFKWEDEVRKTTIREIEWSPSRTGLINPVAIFDPVELEGTTVSRASVHNI 337

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             ++ L+           + +GD V V +A  +IP++ + +       +     P  CP+
Sbjct: 338 SIMEELE-----------LGIGDTVTVYKANMIIPQIAENLTR-----SGVSEIPKECPV 381

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+      +   T        C     C A+ ++    F SRDA NIEGL +  L+ F  
Sbjct: 382 CKKPTKISMENNT----KTLYCMNS-KCQAKHVKSFSLFASRDAMNIEGLSEATLEKFI- 435

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++   DIF L R +     +I+ + GFG+ S  NL   I   R  +L R I+S
Sbjct: 436 ---INGYVKDFTDIFHLDRYE----AEIKTMEGFGEKSYENLRKRIENARKTTLPRLIYS 488

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI ++G   A+ + +         ++   +I    ++      +  VG +IA   VE++
Sbjct: 489 LGIPNIGISNAKMICRALG------EDPKRVIRATEEEL---SAISGVGGVIAGTFVEYF 539

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGA 675
           ++  ++   + LLKEV   + +       +      V TG+++    R + +E + + G 
Sbjct: 540 KDTAHVDVFDRLLKEV--ELTKETSEEDQKFAGVNFVITGSVEHFVNRAQVKEEIEKRGG 597

Query: 676 VVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKIMNEEQFLFLLQQ 720
            V+  ++ KT+ +I  D  GS   K +KA++LG+ I++EE FL ++ +
Sbjct: 598 KVTGSVTSKTNYLINND-TGSGTAKNKKARELGIPIISEEDFLQMMNE 644


>gi|253578000|ref|ZP_04855272.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850318|gb|EES78276.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 614

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 180/676 (26%), Positives = 311/676 (46%), Gaps = 68/676 (10%)

Query: 51  LKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKF 110
           +     A+      +      N P   +G E    L K  H  P LSL+K  + E LR+F
Sbjct: 1   MYDELQALEKETGTVLA----NSPTVSVGYEAVDQLPKEEHESPMLSLDKTKDREVLREF 56

Query: 111 ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170
           I                  L  K+DG  I + YE G    A  RG+G +GE V+   R  
Sbjct: 57  I------------GEHKTLLSWKLDGLTIVLTYENGGLAKAVTRGNGVTGEVVTNNARVF 104

Query: 171 PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
             +P  L +     + +RGE  I+ +DF  +N+ +  V  K Y NPRN  SG +R+LN  
Sbjct: 105 KNVP--LKIPYQGRLVLRGEAIITYSDFERINESIEDVDAK-YKNPRNLCSGSVRQLNNE 161

Query: 231 DITRY-LNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNE 287
              R  + F+   L     + F   +    + ++  GF V       A+T    + Y++ 
Sbjct: 162 ITARRNVRFYAFTLVSADGVDFHNSRARQFEWLKEQGFDVVEYRTVTASTLDEAMEYFST 221

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
             +      +  DGLV   D+ +    LG  A+ PR   + K+A++   T LL+I+    
Sbjct: 222 AIT---ENDFPSDGLVALYDDIAYGDSLGRTAKFPRNAFAFKWADEIRETHLLEIEWSPS 278

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG++ PVA  EPV + G  ++ A++HN   +K L            + +GD + V +A 
Sbjct: 279 RTGLINPVAVFEPVELEGTTVSRASVHNVSILKELQ-----------LGIGDTITVYKAN 327

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
            +IP++ + +       +     P  CP C          +    V A  CT    C+A+
Sbjct: 328 MIIPQIAENLTR-----SSKLEIPDTCPACGHGT----QIQKVNDVEALYCTNP-DCAAK 377

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
           +++    F SRDA NI+GL +  L+ F         I    DIF + + +     +I  +
Sbjct: 378 KIKSFALFASRDAMNIDGLSEATLEKFIAR----GFIHDFGDIFEIGKHR----DEIVEM 429

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            GFG+ S  NL  S++K +  +L + I+SLGI ++G   A+ + +++          +++
Sbjct: 430 DGFGEKSFENLMTSLDKAKETTLAKVIYSLGIANIGLANAKVICRHFD---------DDL 480

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
               + D   +  +  +G +IA ++ +++ N  N   ++ L+  ++  + + EK      
Sbjct: 481 EKIRHADKEEISSIDTIGPVIAGSLTDYFSNEDNNRKLDHLMSHLT--VKKEEKTGEQIF 538

Query: 648 ENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQL 704
            N   V TG+++    R +A+E++  LG  V+  ++ KT+ +I  D  +  SK +KA++L
Sbjct: 539 RNMNFVITGSVEHFANRAQAKEFIESLGGKVTGSVTSKTNYLINNDTTSNSSKNKKAKEL 598

Query: 705 GVKIMNEEQFLFLLQQ 720
           G+ I++EE FL + QQ
Sbjct: 599 GIPILSEEDFLKMAQQ 614


>gi|119025970|ref|YP_909815.1| LigA [Bifidobacterium adolescentis ATCC 15703]
 gi|166215398|sp|A1A200|DNLJ_BIFAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118765554|dbj|BAF39733.1| LigA [Bifidobacterium adolescentis ATCC 15703]
          Length = 892

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 162/510 (31%), Positives = 262/510 (51%), Gaps = 35/510 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + ++S E A +  + +   +      YY    P+  D+ YDA  R   ++   FP L 
Sbjct: 61  VDVASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSL- 119

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR++   + R     +   +
Sbjct: 120 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPL 177

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+ L+    +IPE
Sbjct: 178 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPE 237

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF  LN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 238 FVEIRGEVFMRWDDFNKLNAENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297

Query: 243 LGK---------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G                  Q E  +  +  G PV+   R+  +F  I+   +     R 
Sbjct: 298 IGSLRWGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEHRG 357

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +T
Sbjct: 358 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 417

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++
Sbjct: 418 PVAVLKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPEL 466

Query: 414 VDIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  ++  R         F  P+ CP C + +         +     RC    +C AQ  E
Sbjct: 467 VGPVLERRKGREGELRRFVMPTRCPSCGAEL-----APAKEGDKDIRCPNVESCPAQLTE 521

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           R+ +  SR AF+IE LG Q        E+ 
Sbjct: 522 RIINLASRKAFDIEHLGDQSAIALTNPEED 551



 Score =  180 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 15/191 (7%)

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +   + D ++K R+  L R + +L IR +G   AR++A  + +            A  + 
Sbjct: 707 NTRKMLDEMDKARHADLWRVLVALSIRRLGPPTARTIASAFGTLD----------AIEHA 756

Query: 594 DWLSLIRVPLVGDIIAQAIVEFY---QNPRNI--CAVEALLKEVSPSIGRHEKNVSSEIE 648
               L ++  +G  IA+++V ++   + P N     ++A               +   + 
Sbjct: 757 SVDELSQIDGIGSEIAESVVTWFTAAREPGNWRGAVLDAWKAAGVGVGQAQASGLPQTLA 816

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TG+L+   R  A+E +   G   +  +S+KTD ++VG+N GSK  KA++LG+ +
Sbjct: 817 GKTVVVTGSLEGFSRDSAKEAIVLRGGKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPM 876

Query: 709 MNEEQFLFLLQ 719
           +NE+QF  LL 
Sbjct: 877 LNEDQFKQLLD 887


>gi|13235502|emb|CAC33764.1| DNA ligase [Rickettsia typhi]
          Length = 492

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 193/508 (37%), Positives = 315/508 (62%), Gaps = 23/508 (4%)

Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G +R+L+      R L +F++  G T +  A  Q ++L K++ L F VN  
Sbjct: 1   FANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTEKNLASTQEQLLAKLKALSFSVNEI 60

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            + A++   I ++Y  +K+ R  LPY+IDG+VYK++ F++Q ++G  ARSPR+ I+HKF 
Sbjct: 61  SKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLNNFAMQNRMGFIARSPRFAIAHKFP 120

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
                T+LL I +Q+GRTG+LTPVA L+P+ IGG +++ ATLHN   I            
Sbjct: 121 AIIGQTKLLSITVQVGRTGMLTPVAELDPLEIGGVVVSRATLHNFQDIAR---------- 170

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +D+R+ D V ++RAG+VIP++  + +++R  D   F  P FCP C S++ R ++     
Sbjct: 171 -KDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVKFDTPVFCPSCNSKL-RYVSE---- 224

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
                RC  GL C AQ  ER+ HFVS++A +I GLG++Q+ F          I  P DIF
Sbjct: 225 -DIIIRCDNGLNCPAQNYERICHFVSKNAMDIAGLGRKQVAFLIDKR----LISNPLDIF 279

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+++ +T+  ++EN+ G+G  SV NL+ +I K + ISL+RFI++LGIRH+G + A+ LA
Sbjct: 280 FLKKKNETNLIRLENMDGWGKKSVANLWQNIEKSQKISLQRFIYALGIRHIGEQNAKLLA 339

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + ++SY NF  ++  +  +++D +  L  +  +GD +   I++F+    NI  ++ L   
Sbjct: 340 REFVSYNNFIAQMELLSKNDSDVYQKLNDLEGIGDKMLVDIIDFFYVKENIQLIKKLGAV 399

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++      E    + +  K LVFTG+L+ I R +A+E   +LGA V++ +S  TD++IVG
Sbjct: 400 LNIE-DYKETREQNILTGKILVFTGSLKTISRVEAKEIAEKLGAKVASSVSSNTDLLIVG 458

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            N GSKL+KA++L +KI++E ++L  ++
Sbjct: 459 VNGGSKLKKAKELNIKIIDEAEWLAFIK 486


>gi|33519955|ref|NP_878787.1| DNA ligase [Candidatus Blochmannia floridanus]
 gi|81666906|sp|Q7VRU2|DNLJ_BLOFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33504301|emb|CAD83193.1| DNA ligase [Candidatus Blochmannia floridanus]
          Length = 594

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 197/620 (31%), Positives = 310/620 (50%), Gaps = 49/620 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +  +  L + ++Y +  YY  S+  + D EYD L      +   +P L      +    
Sbjct: 4   IKNRVQILRERLNYLEYLYYVKSESKVSDEEYDILLEELRQLEFKYPYLITK---SSSTQ 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK---DDNSIFFTLEPK 133
            I    + SL ++ H  P LSL  I +   L  F  RI          + N I +  E K
Sbjct: 61  SISNVCDNSLNRIRHQKPMLSLNSIRDKSQLLLFDKRIKYKLSNHYNINQNLIVYCCELK 120

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRG 189
           IDG  ++I Y++GK V+AA RGDG  GE+V+  + AI +IP+ L  N    +P+++E+RG
Sbjct: 121 IDGVALSILYKQGKLVHAATRGDGKIGENVTKNVNAIDSIPKNLKKNNNEILPDLLEIRG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           E++ISK  F  LN EM++ G+K ++N RNAASG LR+L+P     R L F  +G+   + 
Sbjct: 181 EIFISKLSFSKLNQEMLSSGKKVFSNARNAASGSLRQLDPHVTELRSLVFCCYGISYYAG 240

Query: 249 I--FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           +       +  L+     G  +NN ++  +    ++ YYN ++ IRS L Y IDG+V K+
Sbjct: 241 LKQLPNSHWGRLKLCNRWGLSINNYIQIVSGIDPVLEYYNYVRKIRSELEYQIDGIVIKI 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q QLG   R+P W +++KF  +   T+L D+  ++GRTG++TP+A + PV IG  
Sbjct: 301 DNCIYQDQLGCGFRAPNWAVAYKFPAELKLTKLNDVVFKVGRTGLITPIAYINPVVIGNV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +I    +HN + +K L+           + +GD V+V+R+G+VIPK++ II+  R  +A+
Sbjct: 361 IIKKVNMHNVNEVKRLN-----------LMIGDTVIVQRSGDVIPKILKIILENRVDNAK 409

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P FCP C S +            +  RC   L C AQ+   LKHF SR A NI+G+
Sbjct: 410 FIKIPEFCPSCGSIL-----KVEDNKSSVLRCLAKLTCLAQRKSALKHFASRKAMNIQGM 464

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           I  P D F+L + +     +       G+ S   L  SI   +
Sbjct: 465 GSRVINQLVDK----GLICTPVDFFSLSKEKLLCLDRY------GEKSAERLLQSILIAK 514

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L  FI++LGI  VG  ++  LA  Y + +N            N D  S +++  +G 
Sbjct: 515 EITLSAFIYALGIPGVGESVSNKLAYMYRTIENLM----------NADLQSFLQLKFIGK 564

Query: 607 IIAQAIVEFYQNPRNICAVE 626
           I A  I  F     N   ++
Sbjct: 565 IAAMNIYSFLHQSDNYNNIQ 584


>gi|203287992|ref|YP_002223007.1| DNA ligase [Borrelia recurrentis A1]
 gi|254781265|sp|B5RPQ2|DNLJ_BORRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|201085212|gb|ACH94786.1| DNA ligase [Borrelia recurrentis A1]
          Length = 669

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 193/702 (27%), Positives = 338/702 (48%), Gaps = 53/702 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  + E+ SL   I   D  YY  S P + D  YD    R   + + +P+       + P
Sbjct: 3   KDIKDEILSLRDAIKKWDREYYVDSSPTVGDVTYDKALLRLQYLENRYPEYKTL---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K G ++     ++ HS P LSL+K +++++L  ++ ++           +  + EPKI
Sbjct: 60  TLKFGSDLLNDFKEIEHSYPILSLDKAYDVKELLLWVEKMS-LEGSNLGFDMGISAEPKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y+ G    A  RGDG  G +V   +R I  +P  +   +   + +RGE+YI+
Sbjct: 119 DGCSIVLYYKDGILEKALTRGDGRFGNNVIENVRTIKNVPLCIGERV--ELVLRGEIYIT 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAKG 253
           K DFL +N  +       Y N RN  SGILRR+N  ++    L+ FV+ +  +S +    
Sbjct: 177 KKDFLKINHTLDDS----YINARNLTSGILRRINSREVVNFPLDIFVYDILYSS-LKLNT 231

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTF---HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            ++   K++  GF +N   +          I++Y  E++  R    Y+IDG+V KV++F 
Sbjct: 232 NHDAFDKLKHFGFKLNPFCKFFCGKNLGENIINYVKEIEEQRERFEYEIDGVVLKVNDFR 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L+  LG  +  P+W I++KF   +A ++++DI +Q+GR+G +TPVA +E V I GA IT+
Sbjct: 292 LRDVLGYTSHHPKWSIAYKFESLRAVSKVIDIVVQVGRSGKITPVANIEKVLIAGAFITS 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN+DYI  +            + V D V + R G+VIP V  ++      +   F  
Sbjct: 352 ASLHNQDYIDSI-----------GLNVKDVVAISRRGDVIPAVELVVEKLSVGN---FKI 397

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P++CP C+  ++++         A   C   + C  + +  +K+F S+   NI GL ++ 
Sbjct: 398 PNYCPSCKKSLIKE--------GAHLFCVN-IHCPLKIMGHIKYFCSKKCMNIVGLSEKT 448

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++F F        I    D++T          ++  + GF    V  L  SI + +N   
Sbjct: 449 IEFLFNMN----FISSEIDLYTF------DFDRLIGLKGFNFKRVNKLKRSIEESKNRPF 498

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ + ++GI+ +G            +  N    I+ +   N +  + L+ +  +G+ IA 
Sbjct: 499 KKLLLAMGIKDLGINTILL---LINNNLNSFDAISLLCQDNKNALVKLLDIKGIGERIAF 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQE 668
            I+  + +   +       K            V  SS +  KK   TG+  +  RH   +
Sbjct: 556 NIIRAFNDKIILDKFNFFKKLGFKMQEDSMNCVIDSSFLFGKKFCITGSFDEYSRHVLID 615

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +T+ GA+  + +SR  D ++VG +PG KL+KA  LG+KI++
Sbjct: 616 KITKKGAIFHSAVSRYLDFLLVGKSPGLKLKKANNLGIKILS 657


>gi|154488672|ref|ZP_02029521.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis
           L2-32]
 gi|154082809|gb|EDN81854.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis
           L2-32]
          Length = 890

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 162/510 (31%), Positives = 263/510 (51%), Gaps = 35/510 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + ++S E A +  + +   +      YY    P+  D+ YDA  R   ++   FP L 
Sbjct: 59  VDVASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSL- 117

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR++   + R     +   +
Sbjct: 118 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPL 175

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+ L+    +IPE
Sbjct: 176 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPE 235

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF  LN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 236 FVEIRGEVFMRWDDFNKLNAENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 295

Query: 243 LGK---------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G                  Q E  +  +  G PV+   R+  +F  I+   +     R 
Sbjct: 296 IGSLRWGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEHRG 355

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +T
Sbjct: 356 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 415

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++
Sbjct: 416 PVAVLKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPEL 464

Query: 414 VDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  ++  R       + F  P+ CP C + +         +     RC    +C AQ  E
Sbjct: 465 VGPVLERRKGREGQIRRFVMPTRCPSCGAEL-----APAKEGDKDIRCPNVESCPAQLTE 519

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           R+ +  SR AF+IE LG Q        E+ 
Sbjct: 520 RIINLASRKAFDIEHLGDQSAIALTNPEED 549



 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 15/191 (7%)

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +   + D ++K R+  L R + +L IR +G   AR++A  + +            A  + 
Sbjct: 705 NTRKMLDEMDKARHADLWRVLVALSIRRLGPPTARTIASAFGTLD----------AIEHA 754

Query: 594 DWLSLIRVPLVGDIIAQAIVEFY---QNPRNI--CAVEALLKEVSPSIGRHEKNVSSEIE 648
               L ++  +G  IA+++V ++   + P N     ++A               +   + 
Sbjct: 755 SVDELSQIDGIGPEIAESVVTWFTAAREPGNWRGAVLDAWKAAGVGVGQAQASGLPQTLA 814

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TG+L+   R  A+E +   G   +  +S+KTD ++VG+N GSK  KA++LG+ +
Sbjct: 815 GKTVVVTGSLEGFSRDSAKEAIVLRGGKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPM 874

Query: 709 MNEEQFLFLLQ 719
           +NE+QF  LL 
Sbjct: 875 LNEDQFKQLLD 885


>gi|227874422|ref|ZP_03992603.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268]
 gi|227839738|gb|EEJ50187.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268]
          Length = 692

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 191/720 (26%), Positives = 329/720 (45%), Gaps = 70/720 (9%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++    + +   +  L   ++     YYQ  + I+ + EYD       ++      +   
Sbjct: 33  LQEADKQDSIARMKELISFLNEAAKAYYQEGREIVSNLEYDKAYDTLLSLEKESGVVLSG 92

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                P   +G  +  +L K  H  P LSL+K  ++EDL+ F+                 
Sbjct: 93  ----SPSQNVGYAVATALPKEAHETPMLSLDKTKSVEDLQSFLQ------------GQEG 136

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            L  K+DG  I + Y++GK + A  RG+G  GE V+   +    +P  L +     + VR
Sbjct: 137 ILSWKLDGLTIVLHYQEGKLLKAVTRGNGIIGELVTENAKTFQNLP--LQIPFKGHLVVR 194

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE +IS +DF  +N+E+   G K Y NPRN  SG +R+L+P     R +   +  L    
Sbjct: 195 GEAFISYSDFERINEELPEEGAK-YKNPRNLCSGSVRQLDPKVTKERRVQISLFSLVLAE 253

Query: 248 EI-----FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           E      F     E  + +   GF V +  R+      I     E   +     +  DGL
Sbjct: 254 EEGKAPDFHNQHEEEFRFLEKQGFSVVH--RKMVNAENIQEAVAEFSKLMPKNDFPSDGL 311

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V   ++ +  + LG  A+ PR  I+ K+ +++ +T+LL ++    RTG++ PVA   PV 
Sbjct: 312 VLLYNDIAYGESLGRTAKFPRNAIAFKWQDEEETTKLLSVEWSPSRTGLINPVAIFTPVE 371

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G +++ A+LHN  Y + L            + +GD + V +A  +IP++      E  
Sbjct: 372 LEGTVVSRASLHNITYCEDLA-----------LGIGDEITVYKANMIIPQI-----GENK 415

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             +     P  CP CQ     +      K      CT    C A+++++   FVSRDA N
Sbjct: 416 TKSGNLEIPKHCPACQG----ETKIVKDKETKMLYCTNP-HCPAKRIKQFALFVSRDALN 470

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGL +  L+ +         I+   D+F+L++ +     +I  + GFG  S   + ++I
Sbjct: 471 IEGLSEMTLEKWLGR----GFIQEFPDLFSLEKYR----EEIIGMEGFGLKSFEKIQENI 522

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +  +L R ++ LGI  +G    R LA+ +      +Q+   ++    +    +++V 
Sbjct: 523 EKAKTSNLGRLLYGLGIEGIGVSNGRMLAEAF------SQDPYKLMDATKE---EILQVK 573

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G ++A +I E++Q   N   V  LL  +   + + EK   S I  K  V TG +    
Sbjct: 574 GIGQVLADSIAEYFQKEENRRIVLELLSIL--HLEKEEKEEKSGISGKHFVITGAVHHFP 631

Query: 663 -RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R   +E + + G   S+ +S+ TD +I  D+    SK +KA++LG+ I+ EE+FL LL+
Sbjct: 632 NRKALEEEIRKAGGQSSSSVSQNTDYLINNDSTSGSSKNKKAKELGIPIITEEEFLKLLE 691


>gi|254233094|ref|ZP_04926421.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C]
 gi|124602153|gb|EAY61163.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C]
          Length = 495

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 156/521 (29%), Positives = 254/521 (48%), Gaps = 31/521 (5%)

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
           ++  G+ P+ANPRN+A+G LR+ +P    R  L    HGLG          ++    +R 
Sbjct: 3   LVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLALRA 62

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
            G PV+     A    G+    +     R  + ++IDG+V KVDE +LQ++LG  +R+PR
Sbjct: 63  WGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPR 122

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  ATLHN   IK   
Sbjct: 123 WAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKR-- 180

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                    + + +GD V++++AG+VIP+V+  +V  R    + F  P+ CP C S +  
Sbjct: 181 ---------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPL-- 229

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
                  +  A  RC     C  Q  ER+ H  SR+  +IE LG +      +++     
Sbjct: 230 ---APEKEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK----V 282

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           I    ++F L  R    T       G    +   L  +++K +   L R + +L IRHVG
Sbjct: 283 IADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVG 342

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              AR+LA  + S    A    + +A           V  VG  IA A+ E++    +  
Sbjct: 343 PTAARALATEFGSLDAIAAASTDQLAA----------VEGVGPTIAAAVTEWFAVDWHRE 392

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            V+         +   +++V   +    +V TG+L    R  A+E +   G   +  +S+
Sbjct: 393 IVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSK 452

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL     +
Sbjct: 453 KTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADGPAS 493


>gi|237757130|ref|ZP_04585563.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237690707|gb|EEP59882.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 490

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 174/486 (35%), Positives = 270/486 (55%), Gaps = 35/486 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +  + L+ E+A+K +  L + I +HD  YY  ++P+I D EYD L +    I + +P+L 
Sbjct: 20  LDAKKLTKEEAKKIVEDLREVIRFHDWRYYILAQPVISDYEYDKLFKLLKDIENKYPELI 79

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  +I  E+     +V H  P LSL+  +N  DLR F  R+         + +
Sbjct: 80  ---TPDSPTQRIPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVRELTGL---DKV 133

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-- 184
            +++EPK DG  I++ YEK  FV  A RGDG  GE+++  ++ I TIP     +   I  
Sbjct: 134 EYSVEPKFDGAGISLIYEKDLFVRGATRGDGEVGEEITNNLKVIKTIPLSAKFSQYGIDK 193

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +E+RGEV I K+ F  +N+E +  G   +ANPRNAA+G +R  +P+++  R L  FV+ +
Sbjct: 194 VEIRGEVLIRKDLFKKMNEERLEEGLPLFANPRNAAAGSIRLQDPSEVAKRNLEAFVYHI 253

Query: 244 GKTS-------EIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTL 295
                          K   + ++ +  LGF      ++       ++ Y  E +  R T 
Sbjct: 254 TYAEKDGKNLLGTVLKKHSDNIKMLHELGFKTPYPVMKVCIGIEEVIQYCEEWQRKRDTY 313

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           PY+IDG+V KV++ SL  +LG  +  PRW I+ KF  +QA+T+++++  Q+GRTG +TPV
Sbjct: 314 PYEIDGMVIKVNDISLYDKLGFTSHHPRWAIAFKFKARQATTKIINVVFQVGRTGAITPV 373

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A+LEPV IGG ++++ +L NED+I+            +DIR+GD VLV+RAG+VIP VV 
Sbjct: 374 AKLEPVEIGGVIVSSVSLINEDFIR-----------EKDIRIGDTVLVERAGDVIPYVVM 422

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           +I   R  + +P  FP  CP C S +V+          A +RC   + C AQ +ERL HF
Sbjct: 423 VIKEARTGNEKPIEFPKTCPSCGSPIVKPPGE------AVYRCVN-INCPAQVIERLIHF 475

Query: 476 VSRDAF 481
            S+DA 
Sbjct: 476 ASKDAM 481


>gi|54024876|ref|YP_119118.1| putative DNA ligase [Nocardia farcinica IFM 10152]
 gi|81374723|sp|Q5YVN7|DNLJ1_NOCFA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|54016384|dbj|BAD57754.1| putative DNA ligase [Nocardia farcinica IFM 10152]
          Length = 663

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 214/721 (29%), Positives = 336/721 (46%), Gaps = 80/721 (11%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A + +  L   I      YY    P++ D+EYDA++    A+  A P+LA   DPN PL
Sbjct: 2   DAGERIRELADRIVELRTAYY-EGAPLVADAEYDAVEDELRALIAAHPELAP--DPN-PL 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +++G    L    V HS P LSLEK    E +  F  R                + PK+D
Sbjct: 58  DQVGAPAVL-HAPVRHSRPMLSLEKATTPEQVAAFFER---------FPGQPVVVMPKLD 107

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA-IPTIPRVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G+ V A  RGDG +G+DV+  +RA +  +P  +  ++P  +EVRGE  + 
Sbjct: 108 GLSLALVYEDGRLVRAVTRGDGTTGDDVTMLVRALVDGVPEQI--DVPGRVEVRGEAVML 165

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           ++ FLA N    A   KP  NPRNAA+G LR  +P  +  R L FF   L       A  
Sbjct: 166 RSTFLAYNA---AHPDKPLINPRNAAAGTLRAKDPATVAERRLRFFGFDLDTAEGGAAAD 222

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L+ +   G      +R         +   +++  R+ L YDIDG V ++ +     
Sbjct: 223 LGEGLRALGIAGA----AMRMCADAEQAQAAITDIERGRNDLDYDIDGAVLRLADRDAYA 278

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
             G R+ SPR  ++ KFA ++ +T L  +   +G+TG + PVARLEPV +GG  +T ATL
Sbjct: 279 AAGTRSNSPRGALAFKFAAEEKTTVLEAVTWDVGKTGKIVPVARLEPVFVGGTTVTKATL 338

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERHPDAQPFSFPS 432
            N+  I+            RDI+VGD VLV+RAG+VIP V  ++  ++R         P+
Sbjct: 339 ANQQVIRA-----------RDIKVGDTVLVRRAGDVIPFVAGVLDASKRTGAEVEIVPPT 387

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   V    N +         CT   +C AQ + RL H+ SR A +I+ +G   ++
Sbjct: 388 ECPSCGQPVTEQGNSRE------LFCTNA-SCPAQTVRRLIHWASRAAADIDAIGGVWIE 440

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  +  P+D +TL +       ++      G+VS T + +SI++ R++ L R
Sbjct: 441 RLAE----AGILENPSDFYTLTK------ERLLEFDRIGEVSATRMIESIDRSRDVGLRR 490

Query: 553 FIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            +  L I       A  LA+  + S +  A      +          + V  +G  +A +
Sbjct: 491 ALIGLAIPMASEGTAARLARAGFASLEEVADAGEERL----------VAVEDIGPKVAAS 540

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQ---- 662
           +VE          +E L +       R E         + +  K +V TG +   +    
Sbjct: 541 LVEHLTRL--RPELERLRERGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEK 598

Query: 663 --RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ-FLFLL 718
             R   Q    + GA  ++ +S  TD++I G   G SKL KA++LGV+I+++   +  L+
Sbjct: 599 VARPTFQRLCEKAGATAASSVSANTDLLITGAGVGESKLAKAEKLGVEIVDQATIWAQLI 658

Query: 719 Q 719
           +
Sbjct: 659 E 659


>gi|311064086|ref|YP_003970811.1| NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010]
 gi|310866405|gb|ADP35774.1| LigA NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010]
          Length = 896

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 167/509 (32%), Positives = 260/509 (51%), Gaps = 35/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + +LS E A +  + +   +      YY    P+  D+ YDA  R    +   FP L 
Sbjct: 62  LDVSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL- 120

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +
Sbjct: 121 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPL 178

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     +IPE
Sbjct: 179 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPAADIPE 238

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 239 FVEIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 298

Query: 243 LG---KTSEIFAKGQ------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G     S   A          E        G PV+   R+  +F  I+   +     R 
Sbjct: 299 IGTLRWGSGRPAGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEHRG 358

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLD+ +Q+GRTG +T
Sbjct: 359 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDVTVQVGRTGRVT 418

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN   +K            + + +GD V+V++AG+VIP++
Sbjct: 419 PVAVLKPVYVAGSTVSRTTLHNPFEVKR-----------KGVLIGDTVVVRKAGDVIPEL 467

Query: 414 VDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  +V  R     D + F  P  CP C S++         +     RC    +C AQ  E
Sbjct: 468 VGPVVERRKGREDDLREFVMPDRCPSCGSKL-----APAKEGDKDIRCPNVESCPAQLTE 522

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           R+ +  SR AF+IE LG Q        E+
Sbjct: 523 RIINLASRKAFDIEHLGDQSAIALTNPEE 551



 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 102/228 (44%), Gaps = 15/228 (6%)

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
              P + +   A +  + R+   + T    +      +   ++D ++K R+  L R + +
Sbjct: 674 EPYPGYDVPADAVVVRVDRKTTRNGTVDVPVYVRPGENTRKMFDEMDKARHADLWRVLVA 733

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L IR +G   AR +A  + S +   Q   + ++           +  +G  IA+++V ++
Sbjct: 734 LSIRRLGPPTARLIASAFGSLEAIEQAGVDELSA----------IDGIGPEIAESVVNWF 783

Query: 617 QN-----PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
                        + A               +   +  K +V TG+L+   R  A+E + 
Sbjct: 784 AAAREPRDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAII 843

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + G   +  +S+KTD ++VG+N GSK  KA++LG+ +++E QF  LL+
Sbjct: 844 ERGGKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 891


>gi|224282769|ref|ZP_03646091.1| LigA [Bifidobacterium bifidum NCIMB 41171]
 gi|313139930|ref|ZP_07802123.1| LigA [Bifidobacterium bifidum NCIMB 41171]
 gi|313132440|gb|EFR50057.1| LigA [Bifidobacterium bifidum NCIMB 41171]
          Length = 900

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 168/509 (33%), Positives = 260/509 (51%), Gaps = 35/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + +LS E A +  + +   +      YY    P+  D+ YDA  R    +   FP L 
Sbjct: 62  LDVSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL- 120

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +
Sbjct: 121 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPL 178

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     +IPE
Sbjct: 179 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPAADIPE 238

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 239 FVEIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 298

Query: 243 LG---KTSEIFAKGQ------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G     S   A          E        G PV+   R+  +F  I+   +     R 
Sbjct: 299 IGTLRWGSGRPAGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEHRG 358

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +T
Sbjct: 359 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 418

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN   +K            + + +GD V+V++AG+VIP++
Sbjct: 419 PVAVLKPVYVAGSTVSRTTLHNPFEVKR-----------KGVLIGDTVVVRKAGDVIPEL 467

Query: 414 VDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  +V  R     D + F  P  CP C S++         +     RC    +C AQ  E
Sbjct: 468 VGPVVERRKGREDDLREFVMPDRCPSCGSKL-----APAKEGDKDIRCPNVESCPAQLTE 522

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           R+ +  SR AF+IE LG Q        E+
Sbjct: 523 RIINLASRKAFDIEHLGDQSAIALTNPEE 551



 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 102/228 (44%), Gaps = 15/228 (6%)

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
              P + +   A +  + R+   + T    +      +   ++D ++K R+  L R + +
Sbjct: 678 EPYPGYDVPADAVVVRVDRKTTRNGTVDVPVYVRPGENTRKMFDEMDKARHADLWRVLVA 737

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L IR +G   AR +A  + S +   Q   + ++           +  +G  IA+++V ++
Sbjct: 738 LSIRRLGPPTARLIASAFGSLEAIEQAGVDELSA----------IDGIGPEIAESVVNWF 787

Query: 617 QN-----PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
                        + A               +   +  K +V TG+L+   R  A+E + 
Sbjct: 788 AAAREPRDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAII 847

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + G   +  +S+KTD ++VG+N GSK  KA++LG+ +++E QF  LL+
Sbjct: 848 ERGGKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 895


>gi|15828860|ref|NP_326220.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Mycoplasma
           pulmonis UAB CTIP]
 gi|81532955|sp|Q98QH2|DNLJ_MYCPU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|14089803|emb|CAC13562.1| DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) [Mycoplasma
           pulmonis]
          Length = 679

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 206/707 (29%), Positives = 360/707 (50%), Gaps = 51/707 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA----RSEDPNGPLNKI 78
            L +++  ++  YY  ++ ++ D  YDA     + I   FP+      + +     L K+
Sbjct: 14  ELNEKLKLYNHHYYNKNESLVSDEYYDAKLLELENIRDNFPEEYNQVFQKDFSKSVLEKV 73

Query: 79  G--GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
               E ++ L K  H    LSL K ++ EDL ++  RI  F      N+  + L+ KIDG
Sbjct: 74  NHLDEQDVKLKKEKHQKLMLSLNKAYSFEDLERYTNRINTFVG----NNHQYILQEKIDG 129

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YE G    A  RGDG  GE+V+     I  IP+ +  NI E IE+RGE++ S  
Sbjct: 130 VSISLYYENGILTKALTRGDGIYGENVTHNALNIKDIPKTI--NIKENIELRGEIFFSLK 187

Query: 197 DFLALNDE----MIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
            F +L +E          K +  PRN ASGIL+ L  TD + +L+ F++ +        K
Sbjct: 188 LFESLKNEFLDKQDGTKNKKWNTPRNKASGILKSLKTTDESSWLSCFIYEVVSPENFNLK 247

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q ++   ++  GF +          + I ++    K       Y+IDGLV K+++ SL 
Sbjct: 248 TQKQLFDFLKIQGFNL-PKFEFIENENLIENFITNFKFEDDQRDYEIDGLVIKLNDLSLY 306

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG+ ++     I++KF +K   T++ DI + +GRTG++T  A+L+ V + G+ I  AT
Sbjct: 307 DLLGKTSKFFHHSIAYKFRKKFVMTKIEDIFVTVGRTGLITYNAKLQEVVLNGSKIKAAT 366

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN +YIK +            I +GD+V +++AGE+IP+VV ++  +   D   FS   
Sbjct: 367 LHNYEYIKNI-----------KINIGDKVYIEKAGEIIPRVVKLVSPK--NDQNYFSPIE 413

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           FCP C++++    N      +    C     C  +++++LK+FVS+D   I+ LG ++++
Sbjct: 414 FCPSCKNKLSWSEN------MLNQFCLNP-DCIEKKIQKLKYFVSKDGMEIQELGGKKIE 466

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF        ++   DI+ L+            +  F + SV  L   I + +++   +
Sbjct: 467 LFFAK----GWVKKIEDIYNLKNNYDDLL----KLENFQEHSVNVLLHKIEESKDVYTWK 518

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I +LGI+++G ++A+SL K  + ++N  + + +++  N D+          G +  +++
Sbjct: 519 LIAALGIKNIGKKLAKSLVK--IIFENDQKNLLSLLEFNYDELEKY---DEFGSVKIESL 573

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            EF+ N  N   ++ L +         E   S+++ENK  + TGTL+K  R   +  + Q
Sbjct: 574 KEFFANDENRNLIQFLDQNGFELKMEKEIIQSTKLENKTFLITGTLEKP-RDFYKNLIIQ 632

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G ++S+ +S+K D +IVG NPGSK +KA +L +KI++EE    +L+
Sbjct: 633 NGGIISSSISKKLDYLIVGQNPGSKEKKAMELNIKIIDEEFLKKMLE 679


>gi|226325717|ref|ZP_03801235.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758]
 gi|225205841|gb|EEG88195.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758]
          Length = 687

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 184/696 (26%), Positives = 301/696 (43%), Gaps = 60/696 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K + +L ++++ +   YY    P++ D+EYD L      +      +      N P   +
Sbjct: 30  KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDELKELEEQTGFILS----NSPTQTV 85

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G      L KVTH IP LSLEK   I +L  F+              + F    K+DG  
Sbjct: 86  GYYPVSELAKVTHPIPLLSLEKTKLISELLDFMK----------GQEVLFM--LKLDGLT 133

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
             + YE G+ + A+ RGDG  GED++  I A   +P  L++   E + + GE +I  NDF
Sbjct: 134 TKLIYEDGRLIQASTRGDGEVGEDITHNIPAFLNVP--LTIPHKERLVITGESFIPTNDF 191

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE--IFAKGQY 255
             L D +     KPY N RN ASG +R L+P + I R + F    + +  E   F   + 
Sbjct: 192 ERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLEGMEDVPFPDSRA 251

Query: 256 EMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             L+ +  LGF        + T         +  E+ S  + L   IDG+V   D  S  
Sbjct: 252 CKLEGLTHLGFGYCPFFSISGTGLSKEYAEKFIQELVSTAANLHLPIDGIVMIFDSLSYS 311

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K  G+     +  +++KF +    T L +I+    R G + PV   + V I G  ++ A+
Sbjct: 312 KSCGKTGHHYKDGLAYKFEDDTYETFLREIEWTPTRFGEIAPVGIFDTVEIDGCDVSRAS 371

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN  +IK L+           +  G R+LV +   +IP + D +   R+ D      P 
Sbjct: 372 LHNLTFIKNLE-----------LVPGCRILVSKRNMIIPHIEDNLDRGRYTD----ITPP 416

Query: 433 FCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            CP C S+          G+ V    C     C +Q   R  HF S+ A NIEGL +  L
Sbjct: 417 VCPCCGSKTRTYSRKTSDGRTVETLHCDNP-QCDSQITRRFVHFASKKAMNIEGLSEATL 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F         +    DI+ L+  +      I  + G+G+ S   L++SIN  R  S  
Sbjct: 476 EKFLN----LGYLHSFQDIYHLEEHR----EDIVALDGYGEKSFDRLWESINASRRTSFV 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           R++ S+ I  +G   +R L   +  +   F Q           D+    ++   G+I+  
Sbjct: 528 RYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQA-------AVGDY-DFTQLEDFGEILNH 579

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQE 668
            I  ++ +  N+   + L  E +    + E  +   ++     +V TG L+   R    +
Sbjct: 580 NIHSWFADEANLDLWKNLQNEFTFEQRKEETIMTKENKFTGCTIVATGKLEHFTRDGIND 639

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
            + +LGA   + +++KTD +I G+ P +  +K + L
Sbjct: 640 KILELGAKPGSSVTKKTDYLICGEKPAANWQKPRAL 675


>gi|82548271|gb|ABB82962.1| NAD-dependent DNA ligase [uncultured organism HF70_19B12]
          Length = 707

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 201/741 (27%), Positives = 336/741 (45%), Gaps = 99/741 (13%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E   L  EI  H + YY Y++P I D+++D L +R   I  + P L           K+G
Sbjct: 10  EADRLASEIQRHSELYYNYAEPEITDAQFDLLIQRLREIDPSNPQL----------EKVG 59

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      KV H  P LSL+K    +++  F+       Q+       F ++PK+DG+ I
Sbjct: 60  ADPAPGSVKVEHIYPMLSLDKANTPQEIAHFVNITSAATQR-------FVVQPKLDGSAI 112

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y +G  V A  RG G  GEDV+  +R IP IP  +         VRGEV +  + + 
Sbjct: 113 SLEYRRGMLVRAVTRGSGTRGEDVTRNVRRIPNIPNRIK--WRGNCFVRGEVVMLLDTY- 169

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP---TDITRYLNFFVHGLGKTSEIFAK---- 252
                      +   NPRN A+G LR+ NP         L FF + +        +    
Sbjct: 170 ------RENYAEVAPNPRNLAAGALRQKNPESGKARAEDLRFFAYDVKFPEGASGEESKA 223

Query: 253 -----GQYEMLQKMRCLG-FPVNNGVRQANTFHGIVS----YYNEMKSIRSTLPYDIDGL 302
                   ++L+ +  +   P    V +A+    ++        E    R  +P++IDGL
Sbjct: 224 PLNYIHDSQILEWLFTMDIQPAGRFVVEADDSDEVIELLISKTEEAIGSREEMPWEIDGL 283

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVDE + +  LGE A  PRW ++ KF  ++A+T ++ +D Q GRTG +TPVAR+ PV 
Sbjct: 284 VIKVDELTKRPLLGETAHHPRWALAWKFPPEEATTVVMSVDWQTGRTGNVTPVARVAPVM 343

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII----- 417
           + G  + N TLHN   ++ L            +++GDRV++ R G+VIPK+  +I     
Sbjct: 344 VSGVTVENTTLHNPGEVERL-----------GLKIGDRVMIVRRGDVIPKITKVIGQATG 392

Query: 418 ---VNERHPDAQPF----------SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464
                 RH D  PF            PS CP C + +  +         A  +C     C
Sbjct: 393 TDLEGRRHSDGTPFHEALPERIDVEPPSVCPRCGTNLHSE--------GAFLKCRNS-GC 443

Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524
            ++ +  + ++    +  I+G+G++  +   +S          AD++ L      S  ++
Sbjct: 444 PSRVVRSILYWC--KSLEIDGVGEKLANQLVESGLAPEL----ADLYRLSHADVLSLERM 497

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
                 G+ S   + D I  +R +SL+ FI SLG+  +G EIA  ++K   + +NF   +
Sbjct: 498 ------GEKSARRVIDQIQSKRKMSLDHFIASLGLPRIGPEIASMISKEIKTIENFRNLV 551

Query: 585 NNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           N          D    L+ +  +G+I+A+  ++   +  N   +E L   +  +  + E 
Sbjct: 552 NTWSSGREETTDILPRLVAIDGIGEIVARLFLD--GSKSNWSQIEDLSSLLEITPMQTEN 609

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
                +    L  TG++ +  R + +  +   G  V + +S + D +I GD  GSKLEKA
Sbjct: 610 RSIGPLAGLTLCITGSMTRP-RKEVELLIRSAGGKVVSSVSSRLDYLIAGDAAGSKLEKA 668

Query: 702 QQLGVKIMNEEQFLFLLQQYN 722
            +L V ++NEEQ +  + + +
Sbjct: 669 TRLQVSVLNEEQLMQKIGKNH 689


>gi|310287227|ref|YP_003938485.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17]
 gi|309251163|gb|ADO52911.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17]
          Length = 900

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 167/509 (32%), Positives = 259/509 (50%), Gaps = 35/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + +LS E A +  + +   +      YY    P+  D+ YDA  R    +   FP L 
Sbjct: 62  LDVSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL- 120

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +
Sbjct: 121 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPL 178

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     +IPE
Sbjct: 179 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGLTGEDITLNVRTIGSIPANLGGPAADIPE 238

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 239 FVEIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 298

Query: 243 LG---KTSEIFAKGQ------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G     S              E        G PV+   R+  +F  I+   +     R 
Sbjct: 299 IGTLRWGSGRPVGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEHRG 358

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +T
Sbjct: 359 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 418

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN   +K            + + +GD V+V++AG+VIP++
Sbjct: 419 PVAVLKPVYVAGSTVSRTTLHNPFEVKR-----------KGVLIGDTVVVRKAGDVIPEL 467

Query: 414 VDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  +V  R     D + F  P  CP C S++         +     RC    +C AQ  E
Sbjct: 468 VGPVVERRKGREDDLREFVMPDRCPSCGSKL-----APAKEGDKDIRCPNVESCPAQLTE 522

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           R+ +  SR AF+IE LG Q        E+
Sbjct: 523 RIINLASRKAFDIEHLGDQSAIALTNPEE 551



 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 101/228 (44%), Gaps = 15/228 (6%)

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
              P + +   A +  + R+   + T    +      +   ++D ++K R+  L R + +
Sbjct: 678 EPYPGYDVPADAVVVRVDRKTTRNGTVDVPVYVRPGENTRKMFDEMDKARHADLWRVLVA 737

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L IR +G   AR +A  + S     Q   + ++           +  +G  IA+++V ++
Sbjct: 738 LSIRRLGPPTARLIASAFGSLDAIEQAGVDELSA----------IDGIGPEIAESVVNWF 787

Query: 617 QN-----PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
                        + A               +   +  K +V TG+L+   R  A+E + 
Sbjct: 788 AAAREPRDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAII 847

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + G   +  +S+KTD ++VG+N GSK  KA++LG+ +++E QF  LL+
Sbjct: 848 ERGGKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 895


>gi|297243530|ref|ZP_06927462.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD]
 gi|296888575|gb|EFH27315.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD]
          Length = 922

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 163/483 (33%), Positives = 245/483 (50%), Gaps = 36/483 (7%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P   D+ YDA  R   A+  AFP L   + P  P +++GG  +     V H  
Sbjct: 79  AYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTPQSPTHRVGGTFSNDFTSVKHPS 135

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             +SL+ +++IE+L  +   + R  Q  +   +  T E KIDG  + + Y  G       
Sbjct: 136 RMMSLDDVFSIEELHDWYNSVIRDLQWDESQPLPMTCEVKIDGLALNLIYRNGTLEQGLT 195

Query: 154 RGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
           RGDG +GED++  +R I  IP  L      +IPE +E+RGEV++   DF  LNDE    G
Sbjct: 196 RGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEIRGEVFMKWEDFRKLNDEQENAG 255

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ---------YEMLQ 259
           R  +ANPRNAA+G LR+ +P    TR L+FF HGLG+                   +  +
Sbjct: 256 RVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGELRWKENTSHNNSETKFNQSDAYK 315

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
             +  G PV+   R+   F  I    +     R+ + + +DG+V KVD+ +LQ QLG  +
Sbjct: 316 LYQQWGIPVSPYTRKVTNFSEIEEMIDYYGKHRANILHALDGIVVKVDDRALQHQLGATS 375

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R+PRW I++K+  ++ +T L DI +Q+GRTG +TPVA LEPV + G+ I+  TLHN   +
Sbjct: 376 RAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGRVTPVAVLEPVTVAGSTISRTTLHNAYEV 435

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA---QPFSFPSFCPI 436
           +            + + +GD V+V++AG+VIP++V  ++  R       + F  P +CP 
Sbjct: 436 E-----------HKGVLIGDTVVVRKAGDVIPELVGPVLKAREGRENELRKFVMPEYCPS 484

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +++         +     RC     C AQ  ER+ H  SR AF+IE LG         
Sbjct: 485 CGTKL-----APAKEGDKDIRCPNVENCPAQLTERIIHLASRQAFDIENLGDNAALALTN 539

Query: 497 SED 499
            ED
Sbjct: 540 PED 542



 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 114/255 (44%), Gaps = 26/255 (10%)

Query: 484 EGLGKQQ--LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE-------NILGFGDVS 534
           EG  ++   L+  +  + P F + I A +   + ++ T   K         N+  +   S
Sbjct: 658 EGTSEKTTSLNEQWDPQYPKFQVPIDAKVVLWKNKRITRNAKTSDNAKETINVPWYTRPS 717

Query: 535 VTN--LYDSI-NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
            T   + + I  K +N +L R + +L IR +G   AR +A  + S  N ++         
Sbjct: 718 ETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKA-------- 769

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNP----RNICAVEALLKEVSPSIGRHEKNVSSEI 647
                 L ++  VG  IAQA+  ++Q           V    +E          + +  +
Sbjct: 770 --SIEELTQIDGVGPEIAQAVYNWFQQAKDPANWQFEVLKSWQEAGVVGKVEASSFAQTL 827

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +V TG+LQ   R  A+E +   G   S  +S+ T  +I+G+N GSK  KAQ+LG+ 
Sbjct: 828 VGKTIVVTGSLQGFTRDSAKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQELGIP 887

Query: 708 IMNEEQFLFLLQQYN 722
           ++NE+QF  LL+  N
Sbjct: 888 MLNEQQFNTLLKTGN 902


>gi|298252820|ref|ZP_06976614.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1]
 gi|297533184|gb|EFH72068.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1]
          Length = 962

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 163/483 (33%), Positives = 245/483 (50%), Gaps = 36/483 (7%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P   D+ YDA  R   A+  AFP L   + P  P +++GG  +     V H  
Sbjct: 119 AYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTPQSPTHRVGGTFSNDFTSVKHPS 175

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             +SL+ +++IE+L  +   + R  Q  +   +  T E KIDG  + + Y  G       
Sbjct: 176 RMMSLDDVFSIEELHDWYNSVIRDLQWDESKPLPMTCEVKIDGLALNLIYRNGTLEQGLT 235

Query: 154 RGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
           RGDG +GED++  +R I  IP  L      +IPE +E+RGEV++   DF  LNDE    G
Sbjct: 236 RGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEIRGEVFMKWEDFRKLNDEQENAG 295

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ---------YEMLQ 259
           R  +ANPRNAA+G LR+ +P    TR L+FF HGLG+                   +  +
Sbjct: 296 RVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGELRWKENTSHNNSETKFNQSDAYK 355

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
             +  G PV+   R+   F  I    +     R+ + + +DG+V KVD+ +LQ QLG  +
Sbjct: 356 LYQQWGIPVSPYTRKVTNFSEIEEMIDYYGKHRANILHALDGIVVKVDDRALQHQLGATS 415

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R+PRW I++K+  ++ +T L DI +Q+GRTG +TPVA LEPV + G+ I+  TLHN   +
Sbjct: 416 RAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGRVTPVAVLEPVTVAGSTISRTTLHNAYEV 475

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA---QPFSFPSFCPI 436
           +            + + +GD V+V++AG+VIP++V  ++  R       + F  P +CP 
Sbjct: 476 E-----------HKGVLIGDTVVVRKAGDVIPELVGPVLKAREGRENELRKFVMPEYCPS 524

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +++         +     RC     C AQ  ER+ H  SR AF+IE LG         
Sbjct: 525 CGTKL-----APAKEGDKDIRCPNVENCPAQLTERIIHLASRQAFDIENLGDNAALALTN 579

Query: 497 SED 499
            ED
Sbjct: 580 PED 582



 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 24/242 (9%)

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIE-------NILGFGDVSVTN--LYDSI-NK 544
           +  + P F + I A +   + ++ T   K         N+  +   S T   + + I  K
Sbjct: 711 WDPQYPKFQVPIDAKVVLWKNKRITRNAKTSDNAKETINVPWYTRPSETTRSMLEEIAQK 770

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +N +L R + +L IR +G   AR +A  + S  N ++               L ++  V
Sbjct: 771 GKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKA----------SIEELTQIDGV 820

Query: 605 GDIIAQAIVEFYQNP----RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           G  IAQA+  ++Q           V    +E          + +  +  K +V TG+LQ 
Sbjct: 821 GPEIAQAVYNWFQQAKDPANWQFEVLKSWQEAGVVGKVETSSFAQTLVGKTIVVTGSLQG 880

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R  A+E +   G   S  +S+ T  +I+G+N GSK  KAQ+LG+ ++NE+QF  LL+ 
Sbjct: 881 FTRDSAKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQELGIPMLNEQQFNALLKT 940

Query: 721 YN 722
            N
Sbjct: 941 GN 942


>gi|283783245|ref|YP_003373999.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05]
 gi|283441754|gb|ADB14220.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05]
          Length = 962

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 163/483 (33%), Positives = 245/483 (50%), Gaps = 36/483 (7%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P   D+ YDA  R   A+  AFP L   + P  P +++GG  +     V H  
Sbjct: 119 AYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTPQSPTHRVGGTFSNDFTSVKHPS 175

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             +SL+ +++IE+L  +   + R  Q  +   +  T E KIDG  + + Y  G       
Sbjct: 176 RMMSLDDVFSIEELHDWYNSVIRDLQWDESQPLPMTCEVKIDGLALNLIYRNGTLEQGLT 235

Query: 154 RGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
           RGDG +GED++  +R I  IP  L      +IPE +E+RGEV++   DF  LNDE    G
Sbjct: 236 RGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEIRGEVFMKWEDFRKLNDEQENAG 295

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ---------YEMLQ 259
           R  +ANPRNAA+G LR+ +P    TR L+FF HGLG+                   +  +
Sbjct: 296 RVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGELRWKENTSHNNSETKFNQSDAYK 355

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
             +  G PV+   R+   F  I    +     R+ + + +DG+V KVD+ +LQ QLG  +
Sbjct: 356 LYQQWGIPVSPYTRKVTNFSEIEEMIDYYGKHRANILHALDGIVVKVDDRALQHQLGATS 415

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R+PRW I++K+  ++ +T L DI +Q+GRTG +TPVA LEPV + G+ I+  TLHN   +
Sbjct: 416 RAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGRVTPVAVLEPVTVAGSTISRTTLHNAYEV 475

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA---QPFSFPSFCPI 436
           +            + + +GD V+V++AG+VIP++V  ++  R       + F  P +CP 
Sbjct: 476 E-----------HKGVLIGDTVVVRKAGDVIPELVGPVLKAREGRENELRKFVMPEYCPS 524

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +++         +     RC     C AQ  ER+ H  SR AF+IE LG         
Sbjct: 525 CGTKL-----APAKEGDKDIRCPNVENCPAQLTERIIHLASRQAFDIENLGDNAALALTN 579

Query: 497 SED 499
            ED
Sbjct: 580 PED 582



 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 114/255 (44%), Gaps = 26/255 (10%)

Query: 484 EGLGKQQ--LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE-------NILGFGDVS 534
           EG  ++   L+  +  + P F + I A +   + ++ T   K         N+  +   S
Sbjct: 698 EGTSEKTTSLNEQWDPQYPKFQVPIDAKVVLWKNKRITRNAKTSDNAKETINVPWYTRPS 757

Query: 535 VTN--LYDSI-NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
            T   + + I  K +N +L R + +L IR +G   AR +A  + S  N ++         
Sbjct: 758 ETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKA-------- 809

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNP----RNICAVEALLKEVSPSIGRHEKNVSSEI 647
                 L ++  VG  IAQA+  ++Q           V    +E          + +  +
Sbjct: 810 --SIEELTQIDGVGPEIAQAVYNWFQQAKDPANWQFEVLKSWQEAGVVGKVEASSFAQTL 867

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +V TG+LQ   R  A+E +   G   S  +S+ T  +I+G+N GSK  KAQ+LG+ 
Sbjct: 868 VGKTIVVTGSLQGFTRDSAKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQELGIP 927

Query: 708 IMNEEQFLFLLQQYN 722
           ++NE+QF  LL+  N
Sbjct: 928 MLNEQQFNTLLKTGN 942


>gi|302385528|ref|YP_003821350.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
 gi|302196156|gb|ADL03727.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
          Length = 672

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 175/711 (24%), Positives = 300/711 (42%), Gaps = 63/711 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L + ++ + + YY ++ P + D  YD L  +   +             N P   +
Sbjct: 7   EKQRDLTERLNIYREQYYDHNAPSVSDEIYDRLFDKLKELEQQ----TGIHMANSPTQTV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G  +   L K  H IP LSLEK  + EDL  F  +                   K+DG  
Sbjct: 63  GYPVMSKLEKTIHEIPLLSLEKTKSSEDLELFQGKHQVML------------MLKLDGLT 110

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G+ V  A RGDG  GE ++   R I  IP  +       + V GE +I   DF
Sbjct: 111 VKLTYENGRLVEVATRGDGDEGEIITHNTRGITGIPVQI--PYSGRLVVTGEAFIRPVDF 168

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT-SEIFAKGQYE 256
             L  +++    +PY N RN A+G +R L+      R + F   G+ +   ++  K Q  
Sbjct: 169 EILKIKLLDSTGRPYKNGRNLAAGSVRLLDAVACRDRKVVFMPFGVLEGYPDMTTKSQK- 227

Query: 257 MLQKMRCLGFPVNNGV--RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            L ++  LGF +   +  ++  T   I     +++         IDG+V   ++ +  K 
Sbjct: 228 -LSQLPALGFSICKFLVSKRPLTLAEIEQAIQQLQQFAKANGIPIDGIVMSYNDIAFSKS 286

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
            G      +  ++ KF ++   +RLL I+    R+G + PVA  + V I G  ++ A+LH
Sbjct: 287 CGRTGHHYKDGMAFKFEDELYESRLLHIEWNTTRSGEIAPVAVFDTVEIDGCEVSRASLH 346

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N  +I+ L+           +  G+R+LV +   +IP + D +   R         P  C
Sbjct: 347 NLTFIESLE-----------LMPGNRILVSKRNMIIPHIEDNLD--RGGFLLGSVIPHEC 393

Query: 435 PICQSRV-----VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           P C                  +      C     C  ++L R  HFVS+ A +I GL + 
Sbjct: 394 PCCGQSTRIHVGEERSVEGEVRTTKTLFCDNP-DCETRRLRRFVHFVSQKAMDIAGLSEA 452

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+           I    DI+ L R +     +I  + GFG+ S  NL+D+I + RN +
Sbjct: 453 TLEKLIGR----GWIHTYMDIYRLDRHR----GEIVRMDGFGEKSWQNLWDAIQQSRNTT 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            ER++ ++ I  +G   +++L K +  S  +F   +               ++P  G+ +
Sbjct: 505 FERYVIAMDIPMIGNSASKALRKEFNGSLSDFEMAVYQ--------GYDFTQLPDFGETL 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHK 665
              I +++    NI + + L K +       E   S E        +V TG ++   R  
Sbjct: 557 HNNIRDWFSLEENIYSWDELQKLLCIEKKLAETVPSDEDSAFVGCTIVVTGKVEPYTREG 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             + +  LGA     +S KTD ++ G+  G KL KA++LG+ ++   +F  
Sbjct: 617 INDLIESLGAHPGNSVSSKTDYLVCGEKAGGKLMKARELGIPVLTPAEFFQ 667


>gi|213865477|ref|ZP_03387596.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 423

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 177/450 (39%), Positives = 270/450 (60%), Gaps = 30/450 (6%)

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRG 189
           E K+DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRG
Sbjct: 1   ELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRG 60

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV++ +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    
Sbjct: 61  EVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEG 120

Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                     L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+
Sbjct: 121 GELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVN 180

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L
Sbjct: 181 SLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVL 240

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P
Sbjct: 241 VSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRP 289

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FP+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G
Sbjct: 290 IVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRWAMDVDGMG 343

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +D   + E     +  PAD+F L   + T   ++      G  S  N+ +++ K + 
Sbjct: 344 DKIIDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKA 393

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
            +  RF+++LGIR VG   A  LA Y+ + 
Sbjct: 394 TTFARFLYALGIREVGEATAAGLAAYFGTL 423


>gi|212715716|ref|ZP_03323844.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661083|gb|EEB21658.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM
           16992]
          Length = 891

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 164/509 (32%), Positives = 263/509 (51%), Gaps = 34/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + ++S E A +  + +   +      YY    P+  D+ YDA  R   A+   FP L 
Sbjct: 63  LDVSSMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARMRCLQALEAQFPSL- 121

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             +    P +++GG  +     V H    +SL+ ++++E+LR++   + R     D   +
Sbjct: 122 --DSTQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSLEELREWYDSVIRGLDWSDTKPL 179

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+ L+    +IPE
Sbjct: 180 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPE 239

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242
            +E+RGEV++  +DF  LN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 240 FVEIRGEVFMRWDDFNTLNRESEDAGRAPFANPRNAAAGSLRQKDPRITSTRRLSFYAHG 299

Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           +G                 Q E  +  +  G PV+   R+  TF  I+   +     R  
Sbjct: 300 IGTLQWGAKRGDGHDIVNNQSEAYELYKKWGIPVSPHNREVTTFSQILDMIDYYGEHRGD 359

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +TP
Sbjct: 360 IEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTP 419

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++V
Sbjct: 420 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 468

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R       + F  PS CP C +++         +     RC    +C AQ  ER
Sbjct: 469 GPVLERREGREDQLRRFVMPSQCPSCGAQL-----APAKEGDKDIRCPNVESCPAQLTER 523

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + +  SR AF+IE LG Q        E+ 
Sbjct: 524 IINLASRKAFDIEHLGDQSAIALTNPEED 552



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 15/193 (7%)

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +   + D I+K R+  L R + +L IR +G   AR +A    S     +   + ++    
Sbjct: 707 NTRKMLDEIDKARHADLWRVLVALSIRRLGPPTARVIANTLGSLDAIERASVDELS---- 762

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
                 ++  +G  IA+++V ++ +           +EA       +       +   +E
Sbjct: 763 ------QIDGIGPEIAESVVTWFASAKEPGDWRGTVLEAWKAAGVGAEQVEISTLPQTLE 816

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TG+L    R  A+E +   G   S  +S+KTD +++G+N G+K  KA++LGV +
Sbjct: 817 GKTVVVTGSLIDFSRDSAKEAIISRGGRASGSVSKKTDWVVIGENAGAKAAKAEELGVPM 876

Query: 709 MNEEQFLFLLQQY 721
           +NE+QF  LL+  
Sbjct: 877 LNEDQFKILLENG 889


>gi|239620760|ref|ZP_04663791.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|312132368|ref|YP_003999707.1| lig [Bifidobacterium longum subsp. longum BBMN68]
 gi|239516336|gb|EEQ56203.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|311772424|gb|ADQ01912.1| Lig [Bifidobacterium longum subsp. longum BBMN68]
          Length = 920

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 258/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GK---TSEIFAKGQ------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+     +             +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R       + F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 17/220 (7%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGD--VSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           PAD   ++   +T+ T + ++        +   ++D ++K R+  L R + +L IR +G 
Sbjct: 707 PADAVIVRVDHKTTRTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGP 766

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-----P 619
             AR +A            + ++ A  N     L  +  VG  IA+++V ++        
Sbjct: 767 PTARLIAS----------AMGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREPGD 816

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                + A              ++   +  K +V TG+L+   R  A+E + + G   + 
Sbjct: 817 WRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAG 876

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +S+KTD +++G N GSK  KA++LG+ +++E QF  LL 
Sbjct: 877 SVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLLA 916


>gi|322689624|ref|YP_004209358.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691585|ref|YP_004221155.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291516189|emb|CBK69805.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum F8]
 gi|320456441|dbj|BAJ67063.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460960|dbj|BAJ71580.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F]
          Length = 920

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 258/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GK---TSEIFAKGQ------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+     +             +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R       + F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 17/220 (7%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGD--VSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           PAD   ++   +T+ T + ++        +   ++D ++K R+  L R + +L IR +G 
Sbjct: 707 PADAVIVRVDHKTTRTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGP 766

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-----P 619
             AR +A            + ++ A  N     L  +  VG  IA+++V ++        
Sbjct: 767 PTARLIAS----------AMGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREPGD 816

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                + A              ++   +  K +V TG+L+   R  A+E + + G   + 
Sbjct: 817 WRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAG 876

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +S+KTD +++G N GSK  KA++LG+ +++E QF  LL 
Sbjct: 877 SVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLLA 916


>gi|317481657|ref|ZP_07940691.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916889|gb|EFV38277.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 920

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 258/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLVGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GK---TSEIFAKGQ------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+     +             +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R       + F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 17/220 (7%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGD--VSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           PAD   ++   +T+ T + ++        +   ++D ++K R+  L R + +L IR +G 
Sbjct: 707 PADAVIVRVDHKTTRTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGP 766

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-----P 619
             AR +A            + ++ A  N     L  +  VG  IA+++V ++        
Sbjct: 767 PTARLIAS----------AMGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREPGD 816

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                + A              ++   +  K +V TG+L+   R  A+E + + G   + 
Sbjct: 817 WRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAG 876

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +S+KTD +++G N GSK  KA++LG+ +++E QF  LL 
Sbjct: 877 SVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLLA 916


>gi|23464680|ref|NP_695283.1| LigA [Bifidobacterium longum NCC2705]
 gi|81754681|sp|Q8G830|DNLJ_BIFLO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23325242|gb|AAN23919.1| LigA [Bifidobacterium longum NCC2705]
          Length = 920

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 258/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GK---TSEIFAKGQ------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+     +             +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R       + F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 17/220 (7%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGD--VSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           PAD   ++   +T+ T + ++        +   ++D ++K R+  L R + +L IR +G 
Sbjct: 707 PADAVIVRVDHKTTRTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGP 766

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-----P 619
             AR +A            + ++ A  N     L  +  VG  IA+++V ++        
Sbjct: 767 PTARLIAS----------AMGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREPGD 816

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                + A              ++   +  K +V TG+L+   R  A+E + + G   + 
Sbjct: 817 WRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAG 876

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +S+KTD +++G N GSK  KA++LG+ +++E QF  LL 
Sbjct: 877 SVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLLA 916


>gi|289178474|gb|ADC85720.1| NAD-dependent DNA ligase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 889

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 161/509 (31%), Positives = 263/509 (51%), Gaps = 35/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + +  L++EQA +  S L   +      YY    P+  D+ YDA       +   FP L 
Sbjct: 64  LDVSKLNVEQAVRLWSRLSAWVEGDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQL- 122

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++ E+LR +   + +  +  +D  +
Sbjct: 123 --DTPQSPTHRVGGTFSNDFTAVRHPSQMMSLDDVFSFEELRAWYDGVRKDLEWPEDKLL 180

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     +IP+
Sbjct: 181 PMTCEVKIDGLALNLIYRNGVLTQGLTRGDGVTGEDITMNVRTIHSIPTNLDGPEGDIPD 240

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
           ++E+RGEV++  +DF  LN+     GR P+ANPRNAA+G LR+ +P     R+L+F+ HG
Sbjct: 241 MVEIRGEVFMRWDDFHKLNEANEDAGRPPFANPRNAAAGSLRQKDPRITAQRHLSFYAHG 300

Query: 243 LGK---TSEIFAK------GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G+    S            Q +     R  G P++   R+   F  I+         R 
Sbjct: 301 IGELVWGSGKPVDVADEVRNQSDAYTMYRKWGVPISPHNREVTDFDQILDMIEYYGEHRG 360

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+ +LQ++LG  +R+PRW I++K+  ++ +T+LL+I +Q+GRTG +T
Sbjct: 361 DIEHALDGIVVKVDDLALQRRLGSTSRAPRWAIAYKYPPEEVNTKLLNIVVQVGRTGRVT 420

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L PV + G+ ++  TLHN   +K            + I +GD V+V++AG+VIP++
Sbjct: 421 PVAILNPVYVAGSTVSRTTLHNAYEVKR-----------KGILIGDTVVVRKAGDVIPEL 469

Query: 414 VDIIVNERHPDAQ---PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  ++ +R    Q    F  P+ CP C + +         +     RC    +C AQ  E
Sbjct: 470 VGPVIAKREGHEQDLREFVMPTRCPSCDTVL-----RYEKEGDKDLRCPNSESCPAQLAE 524

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           R+ +  +R AF+IE LG Q        ED
Sbjct: 525 RVINLAARKAFDIEHLGDQSAVALTNPED 553



 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 14/194 (7%)

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +   + D I K ++  L R + +L IRHVG   A +LAK++ +    A      +     
Sbjct: 705 NTRKMLDEIEKAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADASAEELE---- 760

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNP----RNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
                 ++  +G  IA +I  F++           V    K     +  H++ +   +E 
Sbjct: 761 ------QIDGIGAEIADSIATFFEEARMPGNWRGRVLEAWKAAGVGMSTHDEGLPQTLEG 814

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K +V TGTL+   R  A+E + + G   S  +SRKTD ++VG NPGSK  KA++LG+ I+
Sbjct: 815 KSVVVTGTLEHFSRESAKEAIERRGGKASGSVSRKTDWVVVGANPGSKATKAEELGIPII 874

Query: 710 NEEQFLFLLQQYNT 723
           +E+QF  LL   + 
Sbjct: 875 DEQQFDTLLATGDV 888


>gi|315124105|ref|YP_004066109.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017827|gb|ADT65920.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 561

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 178/617 (28%), Positives = 304/617 (49%), Gaps = 59/617 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYD L R          D       + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDVLIRELRVFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ ++    E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIA--YKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F K   +
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTK-HSD 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ ++       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +            +C   + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGT--------LIKCQN-IDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I     IF L+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HKK----ITTLESIFHLK------FSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFGK------------EWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVS 633
           +   N   ++   K ++
Sbjct: 547 RV--NRTRIDEFYKLLN 561


>gi|309800924|ref|ZP_07695056.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022]
 gi|308222460|gb|EFO78740.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022]
          Length = 885

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 167/509 (32%), Positives = 260/509 (51%), Gaps = 34/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + +LS E A +  + +   +      YY    PI  D+ YDA  R   A+   FP L 
Sbjct: 61  LDVSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPPL- 119

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +
Sbjct: 120 --DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPL 177

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+ L+    +IPE
Sbjct: 178 PMTCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEDDIPE 237

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 238 FVEIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297

Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           +G                 Q E        G PV+   R+  +F  I+   +     R  
Sbjct: 298 IGSLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREVTSFTDILDMIDYYGEHRGD 357

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +TP
Sbjct: 358 IEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVTP 417

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++V
Sbjct: 418 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 466

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  P+ CP C + +         K     RC    +C AQ  ER
Sbjct: 467 GPVLERRKGREESLHAFVMPTHCPSCGAEL-----APAKKGDKDIRCPNVESCPAQLTER 521

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + +  SR AF+IE LG Q        E+ 
Sbjct: 522 IINLASRKAFDIEHLGDQSAIALTNPEED 550



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 29/221 (13%)

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTN---LYDSINKRRNISLERFIFSLGIRH 561
            +PAD   ++   + S T + ++         N   + D + K R++ L R + +L IR 
Sbjct: 682 NVPADAVVIREDTKVSRTGVTSVQPVYVRPAENTRKMLDEMEKARHVDLWRVLVALSIRR 741

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR- 620
           +G   AR++A  + S            A  +     L  +  +G  IA+++V ++     
Sbjct: 742 LGPPTARTIATAFGSLD----------AIEHASVEELSAIDGIGPEIAESVVTWFTAAHE 791

Query: 621 ---NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                  V    K     +     ++   +  K +V TG+L                A  
Sbjct: 792 PGNWRGTVLDAWKTAGVGVVAETNDLPQTLAGKTVVVTGSLVDFS------------ATP 839

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              LSRKTD ++VG+N GSK  KA++LG+ ++NE+QF  LL
Sbjct: 840 PRSLSRKTDWVVVGENAGSKAAKAEELGIPMLNEDQFKQLL 880


>gi|1770452|emb|CAA66920.1| ligase-like protein [Homo sapiens]
          Length = 454

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 161/473 (34%), Positives = 248/473 (52%), Gaps = 29/473 (6%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  PIE LS   A++E++ L+ +++ +   YY+   P++ D  YDAL  R  A+  AFP 
Sbjct: 4   EFTPIEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAFPQ 63

Query: 65  LARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                  + P   +GG +    L KV H  P LSL  ++++E+L  +  R  +    +  
Sbjct: 64  FVTQ---DSPTQNVGGALTKSGLAKVEHPAPMLSLGDVFSLEELAAWDERTTKSLGFQS- 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  + + Y  G+ V A+ RG+G  GEDV+  ++ I  IP+ L+   P 
Sbjct: 120 ---PYNLELKIDGLAVALTYVDGRLVQASTRGNGTIGEDVTRNVKTIKAIPQQLTE--PL 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
            IEVRGE+Y+ K  F ALN +  A G +P+ANPRNAA+G LR+L+      R L+ FV+ 
Sbjct: 175 TIEVRGEIYMPKKSFAALNVQREADGLEPFANPRNAAAGSLRQLDAQVTKQRELSAFVYY 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
             +   +    Q   L +   LG P +   +       I  +     + R TL Y IDG+
Sbjct: 235 TAEPEVLGVTTQSGALARFAELGLPTDTHNQVIEKMADIADFIATYTAKRDTLAYGIDGV 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+    Q +LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV 
Sbjct: 295 VVKVNALDNQVELGNTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAIMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+LHN DY++            +DIR+GD V + +AG++IP+V  +I+++R 
Sbjct: 355 LAGTTVQRASLHNPDYLQ-----------QKDIRIGDTVTLHKAGDIIPEVGQVILSQRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            D+  +  P  CP C S +V            A RC     C+AQ  E L H 
Sbjct: 404 ADSIAYPIPVACPACGSELVHISGE------VALRCINPF-CAAQIQEGLTHL 449


>gi|227546782|ref|ZP_03976831.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212744|gb|EEI80625.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 920

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 259/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GK---TSEIFAKGQ------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+    ++             +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGADHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R       + F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 17/220 (7%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGD--VSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           PAD   ++   +T+ T + ++        +   ++D ++K R+  L R + +L IR +G 
Sbjct: 707 PADAVIVRVDHKTTRTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGP 766

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-----P 619
             AR +A            + ++ A  N     L  +  VG  IA+++V ++        
Sbjct: 767 PTARLIAS----------AMGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREPGD 816

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                + A              ++   +  K +V TG+L+   R  A+E + + G   + 
Sbjct: 817 WRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAG 876

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +S+KTD +++G N GSK  KA++LG+ +++E QF  LL 
Sbjct: 877 SVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLLA 916


>gi|182434930|ref|YP_001822649.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|254778149|sp|B1VUC2|DNLJ1_STRGG RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|178463446|dbj|BAG17966.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 719

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 203/720 (28%), Positives = 324/720 (45%), Gaps = 92/720 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
            +  + D  YD L R   A     P+   +   + P  K+ G   +    V H++P LSL
Sbjct: 42  GESALDDDAYDRLARGIAAYEADHPEEVLA---DSPTGKVAGGAAVG--DVPHTVPMLSL 96

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E    +   + R   +       +++EPK+DG  +  RY  G+F     RGDG 
Sbjct: 97  DNVFSAEQFVTWTASLERRIGRPVT---AWSVEPKLDGLAVAARYRDGRFERLITRGDGT 153

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS    A+  +P  L+   P  IEVRGE+ ++   F   N      G  P+ANPRN
Sbjct: 154 AGEDVSHAAGAVVGLPERLAE--PVTIEVRGEILMTNEQFAQGNAIRTEHGGAPFANPRN 211

Query: 219 AASGILRRLNPTDITRYLNFFVHGL------GKTSEIFAK-GQYEMLQKMRCLGFPVNNG 271
            A+G LR  +         FF +G       G+  E  A+    E+L  +  LG     G
Sbjct: 212 GAAGTLRAKD-RAYRVETTFFAYGALPLPDSGELGEALAELPHSEVLAYVAGLGVHTAAG 270

Query: 272 VRQA----NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
              A     T   + +  + + ++R+ LP+ IDG+V K D  + Q++ G   R+PRW ++
Sbjct: 271 TAVAPLRATTVEEVQARVDGIGALRAALPFGIDGIVIKADLAADQQEAGSGTRAPRWAVA 330

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           +K    +  TRLL ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I        
Sbjct: 331 YKLPAVEKITRLLAVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------ 384

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                RD+R+GD+V+V +AG++IP++   +V+ R  D  P +FP  CP C S +      
Sbjct: 385 -----RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIAFPESCPQCGSEI------ 433

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                    RCT G  C  + +  + +   RD  +IEGLG  ++         A  +   
Sbjct: 434 --DASEQRWRCTRGRDC--RLVASVSYAAGRDQLDIEGLGSTRVVQLVD----AGLVADF 485

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
           AD+FTL+R Q  +  ++      G+ S  NL  +I   R   L R   +LG+R  G  ++
Sbjct: 486 ADLFTLRREQLLALDRM------GETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMS 539

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CAV 625
           R +A+++ +                 D  SL RV  +G   A A+V        +    V
Sbjct: 540 RRIARHFATMDRIVAA----------DAESLQRVDGIGKEKAAAVVAELVELAPLIGKLV 589

Query: 626 EALLKEVSPSIGRHEKNVSS-----------------------EIENKKLVFT----GTL 658
            A +    P         +                         +    +V T    G L
Sbjct: 590 AAGVSMTEPGATPPPDPGTEEAAAPATADAGAPGGDAATGSALPLAGMTVVVTGAMSGAL 649

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R++  E + + G   S+ +SR+T +++ G+  GSK  KA+ LGV+I   E+F  L+
Sbjct: 650 EKLSRNQMNELIERAGGKSSSSVSRRTTLLVAGEKAGSKRAKAEDLGVRIAVPEEFAELV 709


>gi|284031885|ref|YP_003381816.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
 gi|283811178|gb|ADB33017.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
          Length = 671

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 205/723 (28%), Positives = 334/723 (46%), Gaps = 79/723 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + + +L  +I    D YY+   P + D+EYDA++    A+  A P+LA   DPN PL+++
Sbjct: 12  ERIETLADQIVQLRDAYYR-GAPAVADAEYDAIEDELRALIAAHPELAP--DPN-PLDQV 67

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G    L    V HS P LSLEK    E +  F  R                + PK+DG  
Sbjct: 68  GAPAVL-HAPVRHSRPMLSLEKATRPEQVEAFFNR---------FPGRSVVVMPKLDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT-IPRVLSLNIPEIIEVRGEVYISKND 197
           + + YE G+   A  RGDG +G+DV+  +RA+   +P  +  + P  +EVRGE  + ++ 
Sbjct: 118 LALVYEDGQLARAITRGDGTTGDDVTPLVRALADGVPAKI--DAPGRVEVRGEAVMLRST 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F A N    A   KP  NPRNAA+G LR  +P  +  R L F    L    +       +
Sbjct: 176 FAAYNA---AHPDKPLINPRNAAAGTLRAKDPATVAERRLQFLAFDLHTDPD---STDSD 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           + + +R LGF V + +R  +      +    ++  R+ L YD+DG V ++ +       G
Sbjct: 230 LDRALRTLGFAVAD-MRHCDDAAAAQAVITTIEQQRNDLDYDLDGAVLRLADRDAFAAAG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
            R+ SPR  +++KFA ++ +T L D+   +G+TG + PVA LEPV +GG  +T ATL N+
Sbjct: 289 TRSSSPRGALAYKFAAEEKTTVLADVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLANQ 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERHPDAQPFSFPSFCP 435
           + I+            R I++GD VLV+RAG+VIP V  ++  + R    Q    P+ CP
Sbjct: 349 EVIRA-----------RGIKIGDTVLVRRAGDVIPFVAGVLDASRRTGAEQDIVPPTNCP 397

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C   +    N +         CT  ++C AQ + RL H+ SR A +I+ +G   ++   
Sbjct: 398 SCGQPLTEQGNSRE------LFCTN-VSCPAQTVRRLIHWASRAAADIDAIGGVWIERLA 450

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +    A  +  P+D + L +       K+      G+VS   + +SI+  R + L R + 
Sbjct: 451 E----AGILEHPSDFYHLTK------EKLLEFDRIGEVSAARMIESIDASRQVGLRRALI 500

Query: 556 SLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            L +       A  L +  + S +  A      +          + V  +G  +A ++VE
Sbjct: 501 GLAVPMASEGTAARLCRAGFGSLEEVADAGEEGL----------VAVEDIGPKVAASLVE 550

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQ------R 663
                     +E L           E         + +  K +V TG +   +      R
Sbjct: 551 HLSRL--RPELERLRAAGVSLDVLEEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEKVAR 608

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              Q      GA +++ +S  TD +I G + G +KL KA++LGV+++++ +    L    
Sbjct: 609 PAFQRLCESAGATIASSVSASTDYLITGADVGAAKLTKAEKLGVEVVDQSEIWSQLFAAG 668

Query: 723 TTL 725
            TL
Sbjct: 669 ITL 671


>gi|23336066|ref|ZP_00121295.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Bifidobacterium longum DJO10A]
 gi|189438929|ref|YP_001954010.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A]
 gi|254781259|sp|B3DPR8|DNLJ_BIFLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189427364|gb|ACD97512.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A]
          Length = 920

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 258/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNMMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GK---TSEIFAKGQ------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+     +             +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R       + F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 17/220 (7%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGD--VSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           PAD   ++   +T+ T + ++        +   ++D ++K R+  L R + +L IR +G 
Sbjct: 707 PADAVIVRVDHKTTRTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGP 766

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-----P 619
             AR +A            + ++ A  N     L  +  VG  IA+++V ++        
Sbjct: 767 PTARLIAS----------AMGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREPGD 816

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                + A              ++   +  K +V TG+L+   R  A+E + + G   + 
Sbjct: 817 WRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAG 876

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +S+KTD +++G N GSK  KA++LG+ +++E QF  LL 
Sbjct: 877 SVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLLA 916


>gi|296454555|ref|YP_003661698.1| DNA ligase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183986|gb|ADH00868.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 920

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 258/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GK---TSEIFAKGQ------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+     +             +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTRWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R       + F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREGQLREFVMPEFCPSCGAKL-----APAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 17/220 (7%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGD--VSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           PAD   ++   +T+ T + ++        +   ++D ++K R+  L R + +L IR +G 
Sbjct: 707 PADAVIVRVDHKTTRTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGP 766

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-----P 619
             AR +A            + ++ A  N     L  +  VG  IA+++V ++        
Sbjct: 767 PTARLIAS----------AMGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAAAREPGD 816

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                + A              ++   +  K +V TG+L+   R  A+E + + G   + 
Sbjct: 817 WRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAG 876

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +S+KTD +++G N GSK  KA++LG+ ++ E QF  LL 
Sbjct: 877 SVSKKTDYVVIGANAGSKATKAEELGIPMLGEAQFAQLLA 916


>gi|306822599|ref|ZP_07455977.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679]
 gi|304554144|gb|EFM42053.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679]
          Length = 897

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 167/509 (32%), Positives = 260/509 (51%), Gaps = 34/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + +LS E A +  + +   +      YY    PI  D+ YDA  R   A+   FP L 
Sbjct: 61  LDVSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPPL- 119

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +
Sbjct: 120 --DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPL 177

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+ L+    +IPE
Sbjct: 178 PMTCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEDDIPE 237

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 238 FVEIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297

Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           +G                 Q E        G PV+   R+  +F  I+   +     R  
Sbjct: 298 IGSLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREVTSFTDILDMIDYYGEHRGD 357

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +TP
Sbjct: 358 IEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVTP 417

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++V
Sbjct: 418 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 466

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  P+ CP C + +         K     RC    +C AQ  ER
Sbjct: 467 GPVLERRKGREESLHAFVMPTHCPSCGAEL-----APAKKGDKDIRCPNVESCPAQLTER 521

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + +  SR AF+IE LG Q        E+ 
Sbjct: 522 IINLASRKAFDIEHLGDQSAIALTNPEED 550



 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 17/221 (7%)

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTN---LYDSINKRRNISLERFIFSLGIRH 561
            +PAD   ++   + S T + ++         N   + D + K R++ L R + +L IR 
Sbjct: 682 NVPADAVVIREDTKVSRTGVTSVQPVYVRPAENTRKMLDEMEKARHVDLWRVLVALSIRR 741

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR- 620
           +G   AR++A  + S            A  +     L  +  +G  IA+++V ++     
Sbjct: 742 LGPPTARTIATAFGSLD----------AIEHASVEELSAIDGIGPEIAESVVTWFTAAHE 791

Query: 621 ---NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                  V    K     +     ++   +  K +V TG+L    R  A+E +   G   
Sbjct: 792 PGNWRGTVLDAWKTAGVGVVAETNDLPQTLAGKTVVVTGSLVDFSRDSAKEAIISHGGKA 851

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +SRKTD ++VG+N GSK  KA++LG+ ++NE+QF  LL
Sbjct: 852 AGSVSRKTDWVVVGENAGSKAAKAEELGIPMLNEDQFKQLL 892


>gi|171742735|ref|ZP_02918542.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC
           27678]
 gi|283456203|ref|YP_003360767.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1]
 gi|171278349|gb|EDT46010.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC
           27678]
 gi|283102837|gb|ADB09943.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1]
          Length = 897

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 167/509 (32%), Positives = 260/509 (51%), Gaps = 34/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + +LS E A +  + +   +      YY    PI  D+ YDA  R   A+   FP L 
Sbjct: 61  LDVSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPSL- 119

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +
Sbjct: 120 --DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPL 177

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+ L+    +IPE
Sbjct: 178 PMTCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEGDIPE 237

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 238 FVEIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297

Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           +G                 Q E        G PV+   R+  +F  I+   +     R  
Sbjct: 298 IGSLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREITSFTDILDMIDYYGEHRGD 357

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +TP
Sbjct: 358 IEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVTP 417

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++V
Sbjct: 418 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 466

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  P+ CP C + +         K     RC    +C AQ  ER
Sbjct: 467 GPVLERRKGREESLHAFVMPTHCPSCGAEL-----APAKKGDKDIRCPNVESCPAQLTER 521

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + +  SR AF+IE LG Q        E+ 
Sbjct: 522 IINLASRKAFDIEHLGDQSAIALTNPEED 550



 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 17/221 (7%)

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTN---LYDSINKRRNISLERFIFSLGIRH 561
            +PAD   ++   + S T + ++         N   + D + K R++ L R + +L IR 
Sbjct: 682 NVPADAVVIREDTKVSRTGVTSVQPVYVRPAENTRKMLDEMEKARHVDLWRVLVALSIRR 741

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR- 620
           +G   AR++A  + S            A  +     L  +  +G  IA+++V ++     
Sbjct: 742 LGPPTARTIATAFGSLD----------AIEHASVEELSAIDGIGPEIAESVVTWFTAAHE 791

Query: 621 ---NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                  V    K     +     ++   +  K +V TG+L    R  A+E +   G   
Sbjct: 792 PGNWRGTVLDAWKTAGVGVVAETNDLPQTLAGKTVVVTGSLVDFSRDSAKEAIISHGGKA 851

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +SRKTD ++VG+N GSK  KA++LG+ ++NE+QF  LL
Sbjct: 852 AGSVSRKTDWVVVGENAGSKAAKAEELGIPMLNEDQFKQLL 892


>gi|183601766|ref|ZP_02963136.1| LigA [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683704|ref|YP_002470087.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190736|ref|YP_002968130.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196142|ref|YP_002969697.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|254781258|sp|B8DU32|DNLJ_BIFA0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183219372|gb|EDT90013.1| LigA [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621354|gb|ACL29511.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249128|gb|ACS46068.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250696|gb|ACS47635.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793725|gb|ADG33260.1| LigA [Bifidobacterium animalis subsp. lactis V9]
          Length = 863

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 161/509 (31%), Positives = 263/509 (51%), Gaps = 35/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + +  L++EQA +  S L   +      YY    P+  D+ YDA       +   FP L 
Sbjct: 38  LDVSKLNVEQAVRLWSRLSAWVEGDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQL- 96

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++ E+LR +   + +  +  +D  +
Sbjct: 97  --DTPQSPTHRVGGTFSNDFTAVRHPSQMMSLDDVFSFEELRAWYDGVRKDLEWPEDKLL 154

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     +IP+
Sbjct: 155 PMTCEVKIDGLALNLIYRNGVLTQGLTRGDGVTGEDITMNVRTIHSIPTNLDGPEGDIPD 214

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242
           ++E+RGEV++  +DF  LN+     GR P+ANPRNAA+G LR+ +P     R+L+F+ HG
Sbjct: 215 MVEIRGEVFMRWDDFHKLNEANEDAGRPPFANPRNAAAGSLRQKDPRITAQRHLSFYAHG 274

Query: 243 LGK---TSEIFAK------GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G+    S            Q +     R  G P++   R+   F  I+         R 
Sbjct: 275 IGELVWGSGKPVDVADEVRNQSDAYTMYRKWGVPISPHNREVTDFDQILDMIEYYGEHRG 334

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+ +LQ++LG  +R+PRW I++K+  ++ +T+LL+I +Q+GRTG +T
Sbjct: 335 DIEHALDGIVVKVDDLALQRRLGSTSRAPRWAIAYKYPPEEVNTKLLNIVVQVGRTGRVT 394

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L PV + G+ ++  TLHN   +K            + I +GD V+V++AG+VIP++
Sbjct: 395 PVAILNPVYVAGSTVSRTTLHNAYEVKR-----------KGILIGDTVVVRKAGDVIPEL 443

Query: 414 VDIIVNERHPDAQ---PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  ++ +R    Q    F  P+ CP C + +         +     RC    +C AQ  E
Sbjct: 444 VGPVIAKREGHEQDLREFVMPTRCPSCDTVL-----RYEKEGDKDLRCPNSESCPAQLAE 498

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           R+ +  +R AF+IE LG Q        ED
Sbjct: 499 RVINLAARKAFDIEHLGDQSAVALTNPED 527



 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 14/194 (7%)

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +   + D I K ++  L R + +L IRHVG   A +LAK++ +    A      +     
Sbjct: 679 NTRKMLDEIEKAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADASAEELE---- 734

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNP----RNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
                 ++  +G  IA +I  F++           V    K     +  H++ +   +E 
Sbjct: 735 ------QIDGIGAEIADSIATFFEEARMPGNWRGRVLEAWKAAGVGMSTHDEGLPQTLEG 788

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K +V TGTL+   R  A+E + + G   S  +SRKTD ++VG NPGSK  KA++LG+ I+
Sbjct: 789 KSVVVTGTLEHFSRESAKEAIERRGGKASGSVSRKTDWVVVGANPGSKATKAEELGIPII 848

Query: 710 NEEQFLFLLQQYNT 723
           +E+QF  LL   + 
Sbjct: 849 DEQQFDTLLATGDV 862


>gi|311747945|ref|ZP_07721730.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
 gi|126574918|gb|EAZ79276.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
          Length = 791

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 159/482 (32%), Positives = 252/482 (52%), Gaps = 30/482 (6%)

Query: 38  YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLS 97
             + +I D E+D L      +   FPDL +   P+ P  ++GG +      V H+   LS
Sbjct: 2   EDQAVISDFEFDKLLEELVQLETEFPDLLQ---PDSPSQRVGGTITKEFETVVHAYKMLS 58

Query: 98  LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
           L   ++ E+L  F  R+ +       N   +  E K DG  I++ YE GK V A  RGDG
Sbjct: 59  LGNTYSKEELIAFDERVQKGLG---GNPYEYFCEMKFDGVAISLVYENGKLVRAVTRGDG 115

Query: 158 HSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216
             G+DV+A +R I  IP  +  + IPE  EVRGE+++   +F  +N E    G    ANP
Sbjct: 116 TRGDDVTANVRTIRNIPLYVKGDKIPERFEVRGEIFLPHREFEKINAERNENGEALMANP 175

Query: 217 RNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQA 275
           RNAASG L+  + + +  R LN + + L    +I      E +  +   GF V+   R+ 
Sbjct: 176 RNAASGTLKMQDSSVVAKRRLNCYFYQL-LGEDIGVNAHDEAISLIESWGFNVSPTYRKT 234

Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
           NT   +++Y  + +  R TLP D DG+V K++++  +++LG  A++PRW I++K+  + +
Sbjct: 235 NTIEDVLTYIEDWREKRFTLPLDTDGVVLKINDYEQREELGFTAKNPRWAIAYKYKAESS 294

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            T LL +  Q+GRTG +TPVA L PV++ G  +  A+LHN + I+ L            +
Sbjct: 295 ETELLSVTYQVGRTGAITPVANLAPVSLAGTTVKRASLHNANEIERL-----------GL 343

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
             GD V V++ GE+IPK+  + + +R PD++P  + S CP C + + R          A 
Sbjct: 344 HTGDVVFVEKGGEIIPKITGVSLEQRKPDSKPIEYISECPECGTPLERKEGE------AK 397

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR 515
           H C     C  Q L R++HFV + A +I+ LG +++            I+ PADI+ L+ 
Sbjct: 398 HFCPNASNCPPQVLGRIEHFVHKRAMDIDSLGTERIRALIDQ----GFIQNPADIYDLES 453

Query: 516 RQ 517
           +Q
Sbjct: 454 KQ 455



 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 111/233 (47%), Gaps = 14/233 (6%)

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   ++     ++        L+  Q+     K      F +  ++N+ + I   +    
Sbjct: 569 EAILEASKRHGTVHRILLDLDLELSQELRERIKKLKANTFQEGVISNMMEGIAASKKQPF 628

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F+LG+R++G   A  LA+++ S              N      L+ +  VG+ + Q
Sbjct: 629 EKVLFALGVRNIGENTAALLAQHFGSIDKL----------NEASTEELLEINGVGETLVQ 678

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQE 668
           +I EF+    N+  +  L K          + VS  + +E KK++ +G L + +R +  +
Sbjct: 679 SIHEFFSRQENLDIISRLKKSGLQFDAEQIETVSLGNALEGKKILASGKLNQFKRDEIVD 738

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++   G    + +S+K D II G++ G SK EKAQ+LG+ +++EE FL +L++
Sbjct: 739 FIKSHGGQYVSSVSKKLDFIIEGEDMGPSKKEKAQKLGIPLISEEDFLKMLEE 791


>gi|291456400|ref|ZP_06595790.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213]
 gi|291381677|gb|EFE89195.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213]
          Length = 930

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 161/509 (31%), Positives = 259/509 (50%), Gaps = 35/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + +  L+ E A +  + +   +      YY    P+  D+ YDA  R    +  AFP L 
Sbjct: 52  LDVNTLNAEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQKLEAAFPSL- 110

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     D   +
Sbjct: 111 --DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPDGKPL 168

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPE 183
             + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     +IP+
Sbjct: 169 PMSCEVKIDGLALNLIYRGGVLEQGLTRGDGVTGEDITLNVRTIGSIPAQLGGPKEDIPD 228

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF  LN+E    GR  +ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 229 FVEIRGEVFMRWDDFHTLNNEQEDAGRALFANPRNAAAGSLRQKDPRITATRRLSFYAHG 288

Query: 243 LGK---TSEIFAKGQ------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           LG+     +             +        G PV+   R   +FH I+   +     R 
Sbjct: 289 LGQLTWGPDHPRGTHDVIADQSQAYDLYAKWGVPVSPHNRSVTSFHEILDMIDYYGEHRG 348

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +T
Sbjct: 349 DIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVT 408

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++
Sbjct: 409 PVAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPEL 457

Query: 414 VDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  ++  R       + F  P FCP C +++         +     RC    +C AQ  E
Sbjct: 458 VGPVLERRKGRESELREFVMPEFCPSCGAKL-----APAKEGDKDIRCPNVESCPAQLTE 512

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           R+    SR AF+IE LG+Q        E+
Sbjct: 513 RVISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 17/224 (7%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGD--VSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           PAD   ++   +T+ T + ++  +     +   ++D ++K R+  L R + +L IR +G 
Sbjct: 717 PADAVIVRVDHKTTRTGVTDVPVYIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGP 776

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-----P 619
             AR +A            + ++ A  N     L  +  VG  IA+++V ++        
Sbjct: 777 PTARLIAS----------AMGSLGAIENATVEDLTAIDGVGPEIAESVVNWFAAAREPGD 826

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                + A               +   +  K +V TG+L+   R  A+E + + G   + 
Sbjct: 827 WRGETLRAWQAAGVGVDVAETSTLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAG 886

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +S+KTD ++VG+N GSK  KA++LG+ ++NE QF  LL+  + 
Sbjct: 887 SVSKKTDYVVVGENAGSKAAKAEELGIPMLNEAQFAQLLENGSI 930


>gi|308235729|ref|ZP_07666466.1| DNA ligase (NAD(+)) [Gardnerella vaginalis ATCC 14018]
 gi|311114720|ref|YP_003985941.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019]
 gi|310946214|gb|ADP38918.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019]
          Length = 960

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 163/531 (30%), Positives = 263/531 (49%), Gaps = 51/531 (9%)

Query: 1   MKKRQLIPIEA----------LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDA 50
           + K +   ++A          L+ EQA +  + L          YY    P   D+ YD 
Sbjct: 78  ISKLEPTDVDAIALSKLEPSLLTSEQAARLWAKLAAWAQSDQIAYYVDDSPSSSDAAYDT 137

Query: 51  LKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKF 110
             R   ++   FP L   + P  P +++GG  +     V H    +SL+ ++++E+L+ +
Sbjct: 138 RMRVLSSLESTFPIL---DTPQSPTHRVGGTFSNDFASVKHPSRMMSLDDVFSLEELKSW 194

Query: 111 ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170
              I R  +   +  +  T E KIDG  + + Y  G       RGDG +GED+S  +R I
Sbjct: 195 YDSIIRDLKWPQNKPLPMTCEVKIDGLALNLIYRNGTLEQGLTRGDGVTGEDISLNVRTI 254

Query: 171 PTIPRVLS----LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR 226
             IP  L      +IPE +E+RGEV++   DF  LN E   +G+  +ANPRNAA+G LR+
Sbjct: 255 EEIPTQLKCENSDDIPEFVEIRGEVFMKWADFRKLNIEQEDLGKPAFANPRNAAAGSLRQ 314

Query: 227 LNPT-DITRYLNFFVHGLGKT-------SEIFAKGQ-------YEMLQKMRCLGFPVNNG 271
            +P    TR L+F  HGLG         ++   K          +  +  +  G PV+  
Sbjct: 315 KDPRITATRRLSFIAHGLGDLKWKDSVRNDSEHKSHKQTSFNQSDAYELYKKWGIPVSPY 374

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            R+  +F  I          R+++ + +DG+V KVD+ +LQ++LG  +R+PRW I++K+ 
Sbjct: 375 TRKVTSFEQIEDMIEYYGEHRNSIIHALDGIVVKVDDRALQRELGSTSRAPRWAIAYKYP 434

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++ +T L DI +Q+GRTG +TPVA L+PV + G+ I+  TLHN   ++           
Sbjct: 435 PEEVNTVLKDIVVQVGRTGRVTPVAVLDPVTVAGSTISRTTLHNPYEVE----------- 483

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPK 448
            + + +GD V+V++AG+VIP++V  ++  R  +    + F  P +CP C S++       
Sbjct: 484 HKGVLIGDTVVVRKAGDVIPELVGPVLKYRDGNESKLRKFVMPEYCPSCGSKL-----AP 538

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
             +     RC     C AQ  ER+ +  SR AF+IE LG+         ED
Sbjct: 539 AKEGDKDIRCPNVENCPAQLTERIINLASRHAFDIENLGESSALALTNPED 589



 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 96/194 (49%), Gaps = 18/194 (9%)

Query: 538 LYDSI-NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           + + I  K ++ +L R + +L IR +G   AR +A  + S +N ++              
Sbjct: 761 MLEEIAQKGKSATLWRVLVALSIRRLGPPTARLIAARFGSIENISKA----------SVE 810

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR-------HEKNVSSEIEN 649
            L ++  VG  IAQA+ ++++  +N     + +       G        +  ++   +  
Sbjct: 811 DLTQIDGVGPEIAQAVYDWFEKSKNPQDWRSEVLRKWNEAGVVGSSDSSNADSIEQTLSG 870

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K +V TG+L+   R  A+E ++  G   ++ +S+KT  +IVG+N GSK  KA++LG+ ++
Sbjct: 871 KTVVVTGSLEGFTRDSAKEAISSRGGKAASSVSKKTYCVIVGENAGSKATKAEELGIPML 930

Query: 710 NEEQFLFLLQQYNT 723
           +E QF  LL   + 
Sbjct: 931 DENQFKILLNTGSI 944


>gi|326775447|ref|ZP_08234712.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
 gi|326655780|gb|EGE40626.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
          Length = 712

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 203/720 (28%), Positives = 324/720 (45%), Gaps = 92/720 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
            +  + D  YD L R   A     P+   +   + P  K+ G   +    V H++P LSL
Sbjct: 35  GESALDDDAYDRLARGIAAYEADHPEEVLA---DSPTGKVAGGAAVG--DVPHTVPMLSL 89

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E    +   + R   +       +++EPK+DG  +  RY  G+F     RGDG 
Sbjct: 90  DNVFSAEQFVTWTASLERRIGRPVT---AWSVEPKLDGLAVAARYRDGRFERLITRGDGT 146

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS    A+  +P  L+   P  IEVRGE+ ++   F   N      G  P+ANPRN
Sbjct: 147 AGEDVSHAAGAVVGLPERLAE--PVTIEVRGEILMTNEQFAQGNAIRTEYGGAPFANPRN 204

Query: 219 AASGILRRLNPTDITRYLNFFVHGL------GKTSEIFAK-GQYEMLQKMRCLGFPVNNG 271
            A+G LR  +         FF +G       G+  E  A+    E+L  +  LG     G
Sbjct: 205 GAAGTLRAKD-RAYRVETTFFAYGALPLPDSGELGETLAELPHSEVLAYVAGLGVHTAAG 263

Query: 272 VRQA----NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
              A     T   + +  + + ++R+ LP+ IDG+V K D  + Q++ G   R+PRW ++
Sbjct: 264 TAVAPLRATTVEEVQARVDGIGALRAALPFGIDGIVIKADLAADQQEAGSGTRAPRWAVA 323

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           +K    +  TRLL ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I        
Sbjct: 324 YKLPAVEKITRLLAVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------ 377

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                RD+R+GD+V+V +AG++IP++   +V+ R  D  P +FP  CP C S +      
Sbjct: 378 -----RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIAFPESCPQCGSEI------ 426

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                    RCT G  C  + +  + +   RD  +IEGLG  ++         A  +   
Sbjct: 427 --DASEQRWRCTRGRDC--RLVASVSYAAGRDQLDIEGLGSTRVVQLVD----AGLVADF 478

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
           AD+FTL+R Q  +  ++      G+ S  NL  +I   R   L R   +LG+R  G  ++
Sbjct: 479 ADLFTLRREQLLALDRM------GETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMS 532

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CAV 625
           R +A+++ +                 D  SL RV  +G   A A+V        +    V
Sbjct: 533 RRIARHFATMDRIVAA----------DAESLQRVDGIGKEKAAAVVAELVELAPLIGKLV 582

Query: 626 EALLKEVSPSIGRHEKNVSS-----------------------EIENKKLVFTGT----L 658
            A +    P         +                         +    +V TG     L
Sbjct: 583 VAGVSMTEPGATPPPDPGTEEAAAPATADAGAPGGDAATGSALPLAGMTVVVTGAMSGAL 642

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R++  E + + G   S+ +SR+T +++ G+  GSK  KA+ LGV+I   E+F  L+
Sbjct: 643 EKLSRNQMNELIERAGGKSSSSVSRRTTLLVAGEKAGSKRAKAEDLGVRIAVPEEFAELV 702


>gi|229817979|ref|ZP_04448261.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM
           20098]
 gi|229784583|gb|EEP20697.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM
           20098]
          Length = 927

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 160/507 (31%), Positives = 258/507 (50%), Gaps = 33/507 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + +  +  + A +  + L   +      YY    P+  D+ YDA  R    +  AFP L 
Sbjct: 70  LDVSGMEADTAARLWAKLAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQRLEAAFPTL- 128

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             ++P  P  ++GG  +     V H    +SL+ +++IE+L  +   + R     +   +
Sbjct: 129 --DNPQSPTRRVGGTFSNDFVSVRHPSRMMSLDDVFSIEELHDWYDGVLRGLDWPEGKPL 186

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPE 183
             + E KIDG  + + Y  G       RGDG +GED++  +R I TIP  L   + +IP+
Sbjct: 187 PMSCEVKIDGLALNLIYRHGVLEQGLTRGDGVTGEDITLNVRTIGTIPANLAGPTEDIPD 246

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF  LNDE    GR+P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 247 FVEIRGEVFMRWDDFRRLNDEQEDAGREPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 306

Query: 243 LGKTSE-------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           +G+               Q E  +     G PV+   R   +F  ++   +     R  +
Sbjct: 307 IGRLEWGAGHAGHDEINDQSEAYELYTKWGVPVSPHNRTVASFAEVLDMIDYYGEHRGDI 366

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            + +DG+V KVD+ +LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +TPV
Sbjct: 367 EHALDGIVVKVDDLALQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTPV 426

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A L+PV++ G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V 
Sbjct: 427 AMLKPVHVAGSTVARTTLHNPFEVKR-----------KGILIGDTVVVRKAGDVIPELVG 475

Query: 416 IIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
            ++  R       + F  P  CP C +++         +     RC    +C AQ  ER+
Sbjct: 476 PVLERRKGRESELREFVMPEHCPSCGAKL-----APAKEGDKDIRCPNVESCPAQLTERV 530

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSED 499
                R AF+IE LG Q        E+
Sbjct: 531 ISLGMRKAFDIEHLGDQSAIALTNPEE 557



 Score =  180 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 109/249 (43%), Gaps = 22/249 (8%)

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN- 537
            A N +G+  +  +    +  P F++  P D   ++   +TS +    I         N 
Sbjct: 672 GAENTDGV--ESAESSLVARYPGFNV--PDDAVVVREETKTSRSGETTITPIIVKPAENT 727

Query: 538 --LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
             + + I+K +   L R + +L IR +G   AR +A    S            A +    
Sbjct: 728 RKMLEEIDKAKQADLWRVLVALSIRRLGPPTARLIASAMGSLD----------AISKASV 777

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENK 650
             L ++  VG  IA+++V ++   R              + G       + ++   +  K
Sbjct: 778 DDLTQIDGVGPEIAESVVHWFAAAREPGDWRGQTLTAWRAAGVGVGEAAKSSLPQTLAGK 837

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+L+   R  A+E + + G   +  +S+KTD +++G N GSK  KA++LG+ +++
Sbjct: 838 TVVVTGSLEGFSRDSAKEAIMERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIPMLD 897

Query: 711 EEQFLFLLQ 719
           E QF  LL 
Sbjct: 898 EAQFELLLA 906


>gi|225352232|ref|ZP_03743255.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157479|gb|EEG70818.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 909

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 162/509 (31%), Positives = 260/509 (51%), Gaps = 34/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + ++S E A +  + +   +      YY    P+  D+ YDA  R   A+   FP L 
Sbjct: 81  LDVSSISAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARIRCLQALEAQFPSL- 139

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             +    P +++GG  +     V H    +SL+ ++++E+L ++   + R     +   +
Sbjct: 140 --DSAQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSLEELHEWYDGVIRGLDWPETKPL 197

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPE 183
             T E KIDG  + + Y  G       RGDG  GED++  +R I TIP+ L+    +IPE
Sbjct: 198 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVIGEDITLNVRTISTIPQNLAGPEEDIPE 257

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF  LN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 258 FVEIRGEVFMRWDDFNTLNKENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 317

Query: 243 LG--------KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           +G                 Q E     +  G PV+   R+  TF  I+   +     R  
Sbjct: 318 IGTLQWGAKRGADHDAVNNQSEAYGLYKKWGIPVSPHNREVTTFSQILDMIDYYGEHRGD 377

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +TP
Sbjct: 378 IEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTP 437

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++V
Sbjct: 438 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 486

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R       + F  PS CP C +++         +     RC    +C AQ  ER
Sbjct: 487 GPVLERREGHEDQLRRFVMPSQCPSCGAQL-----APAKEGDKDIRCPNVESCPAQLTER 541

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + +  SR AF+IE LG Q        E+ 
Sbjct: 542 IINLASRKAFDIEHLGDQSAIALTNPEED 570



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 93/193 (48%), Gaps = 15/193 (7%)

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +   + D I+K R+  L R + +L IR +G   AR +A  + S     +   + ++    
Sbjct: 725 NTRKMLDEIDKARHADLWRVLVALSIRRLGPPTARVIANTFGSLDAIERASVDELS---- 780

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
                 ++  +G  IA+++V ++ +           +EA       +       +   +E
Sbjct: 781 ------QIDGIGPEIAESVVTWFASAKEPGDWRGTVLEAWKAAGVGAEQVEISTLPQTLE 834

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TG+L    R  A+E +   G   S  +S+KTD +++G+N G+K  KA++LGV +
Sbjct: 835 GKTVVVTGSLIDFSRDSAKEAIISRGGRASGSVSKKTDWVVIGENAGAKAAKAEELGVPM 894

Query: 709 MNEEQFLFLLQQY 721
           +NE+QF  LL+  
Sbjct: 895 LNEDQFKILLENG 907


>gi|281212695|gb|EFA86855.1| BRCT domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1835

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 210/769 (27%), Positives = 343/769 (44%), Gaps = 98/769 (12%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP--NGPLNK 77
           E+  +  EI  ++D YY  S+ +I D +YD L +R   +   F             PLN 
Sbjct: 58  EILKIRDEIKKYNDSYYNKSQSLISDYQYDMLFKRLATLESQFHQRFPHSKMLGQSPLNT 117

Query: 78  IGGEM---NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI--------YRFWQKKDDNSI 126
           +G  +     S  KV HS+  LSL   ++IE+L+ F  RI                D+ I
Sbjct: 118 VGAPLPQSQSSKSKVEHSVRMLSLNNAYSIEELQTFERRIVADCLHESRGGGDGDGDHQI 177

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSA--CIRAIPTIPRVL------- 177
            FTLE K DG  ++  YE GK V    RGDG  GEDV+    I     +PR L       
Sbjct: 178 TFTLERKHDGIALSAIYEDGKLVRLVTRGDGIIGEDVTECGNIFINTGLPRELLPGSSGG 237

Query: 178 -SLNIP---EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR-LNPTDI 232
            S N P      EVRGEV +SK   L +N          Y N RN  SGILR      + 
Sbjct: 238 SSNNSPYKKGTFEVRGEVVLSKQQLLEINSSRAKANLPLYKNTRNTVSGILRAGRTIGEF 297

Query: 233 TRYL---NFFVHGLGKTSEIF----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYY 285
            + L   +FF + +    E         Q E L +++ LGF   + V    +   +  Y 
Sbjct: 298 DKDLIKFDFFAYQMVSGEESPTTTAITSQSESLAELKRLGFKCGDIVAI-RSLALVDRYI 356

Query: 286 NEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345
           ++++  R +  +DIDG+V KVD   LQ++LGE  R+PRW +++KF   Q  T L +I +Q
Sbjct: 357 DQLEMERPSYKWDIDGIVIKVDSLELQRRLGETERAPRWAVAYKFGASQYLTTLNEIVLQ 416

Query: 346 IGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405
           +GR+G +TPVA ++PV++ G  ++ ATL+N  ++K ++           +R+GDRV+++R
Sbjct: 417 VGRSGKITPVAIVDPVDVHGVTVSRATLNNIQFVKRMN-----------LRLGDRVVIER 465

Query: 406 AGEVIPKVVDII---------VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV--- 453
           AG+VIP +   I         V+ R           F P C    +R    K  +L    
Sbjct: 466 AGDVIPYLTRYIDENNADGDQVDNREEMDDTTLARLFNPQCNDGKIRCPCEKKLELFTAD 525

Query: 454 --AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A H C G   C+ Q   ++  FVS+D   + G+G  Q++        A  I    D++
Sbjct: 526 DSADHFCMGS-ECTLQLQGQILWFVSKDGMAMTGIGPSQVEAL----MAAGLISDAGDLY 580

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           +L+ ++     ++  I GF    V N+ ++I   +    E  + +LGI   G    ++LA
Sbjct: 581 SLKDKR----DQMLQIPGFNKKRVDNILEAIETSKQRPFESVLCALGIPGFGKSRCKTLA 636

Query: 572 KYYLSYQN-------------------------FAQEINNIIAHNNDDWLSLIRVPLVGD 606
           K + ++                           F    +       D  ++ ++   +G 
Sbjct: 637 KSFKTFDQLSNTSLEDITNRVQLGDLTTYQLYSFFHPYDKAQQLGIDSLVNKLKSNGIGV 696

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            + +         ++  A +   +  +P+     K++   +  KK+V +GT     R + 
Sbjct: 697 EMNKQKS---LKSKSTKAAQQSQQPSTPTSKPQNKSLLEMVAGKKVVVSGTFSIGSRDEV 753

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQF 714
              + Q GA   + +S  TD +IV   P  SK+++A+ L + I++E++ 
Sbjct: 754 VTILEQNGAKSQSKVSSATDYLIVSQKPSSSKVKQAESLNIPILSEQEL 802


>gi|227875717|ref|ZP_03993845.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243]
 gi|269976734|ref|ZP_06183710.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1]
 gi|227843659|gb|EEJ53840.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243]
 gi|269935099|gb|EEZ91657.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1]
          Length = 917

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 200/935 (21%), Positives = 347/935 (37%), Gaps = 236/935 (25%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI------ILDSEYDALKRR 54
           M+K++ IP       Q + E   L  +I      YY    P       + D++YDAL  R
Sbjct: 1   MRKKREIPP------QIQNEHQELVAQIEAARADYY--DNPDEHGVTRLSDADYDALFVR 52

Query: 55  CDAIAHAFPDLARSEDPNG----------------------------PLNKIGGEMNLSL 86
              +  ++P L   + P                              P N +        
Sbjct: 53  LQLLEGSYPALVTPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENAVAVATTEGF 112

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
              TH+    S++ +++  ++  +  R+ +     +      + E K+DG  +++ Y  G
Sbjct: 113 PPHTHAKRMQSIDDVFSTAEVDAWWERVEKGL---EGKPFTVSAEVKVDGLAMSLTYVDG 169

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEM 205
           + +  A RGDG  GEDV+A +R I T+P+ L    IP ++E+RGEVY+   DF  +N E 
Sbjct: 170 QLMTGATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMNAER 229

Query: 206 IAVGR--------------------KPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
            A                         +ANPRNAA+G L++ +  +   R L F  HGLG
Sbjct: 230 EANNAAWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAHGLG 289

Query: 245 KTSEIF-----AKGQYEMLQKMRCLGFPVNNGVRQA--------NTFHGIVSYYNEMKSI 291
                         Q +  +++   G P      Q+         T   + +    M   
Sbjct: 290 AVQGWPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAMTEH 349

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R    + IDG+V KVD  + +  LG  AR+PRW  ++KF  ++  TRLL I++Q+GRTG 
Sbjct: 350 RHDFSHQIDGVVLKVDNLAARVLLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGRTGR 409

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TP A +E V + G+ ++ ATLHN   +             +D+R GD V++++AG++IP
Sbjct: 410 VTPFAVMERVLVDGSYVSRATLHNAKEVAR-----------KDVRPGDTVVLRKAGDIIP 458

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN------------------------- 446
           +V+  +++ R      +  P  CP C +R+ ++                           
Sbjct: 459 EVLGPVLSLRPGGLPEWVMPEMCPSCGTRLGQEKEGDIDLRCPNQAGCPAQITERLIHVG 518

Query: 447 --------------------PKTGKLVAAHRCTGGLACSAQQLERLKHFVSR--DAFNIE 484
                               P+ G+   A   + G +C  +    ++    +  +   IE
Sbjct: 519 ARGALDIEGLGEEGALALTQPEAGRADVAAALSAGGSCMLEDGTEIRVPAGKPLELGAIE 578

Query: 485 GLGKQQLDFFFKSEDPAFSIR--IPADIFTLQRRQQTSTTKIENILGFGDV--------- 533
            L     +   +SE   F ++     D+F  +    T+    + +  F            
Sbjct: 579 SLLPPTQEPVLRSEAGLFDLKSKDLRDVFVWREVPGTAGRDWQQVRFFWAKPKRVTAAEA 638

Query: 534 -----------------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                            +V   ++ +   R+    R + +L IRH+G   AR++A+ + +
Sbjct: 639 ATFGLVAGELGEPVAGKTVETFFNQLAAARSKETWRVLVALSIRHLGPVAARAVARRFPT 698

Query: 577 YQNFAQE----------INNIIAHNNDDWLSLIRVPLV---------------------- 604
               A            +  +IA +  DW  +     +                      
Sbjct: 699 LAAVAAADVEGLSQVEGVGAVIAASVVDWFRVPWHQEIVLAWTQAGLGLGLRDFGVGLAS 758

Query: 605 -----------GDIIAQAIVEFY---------------QNPRNICAVEALLKEVSPSIG- 637
                      G I      +F                  P N   +EA   +  P+   
Sbjct: 759 ASRGASPGVDSGGIQPDLFSDFGTGHVSGGDVESGQAPHEPANPGGIEASWGQNFPAAKG 818

Query: 638 -----------RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
                         +     +    LV TG +    R  AQ  V   G   +  +S+KT 
Sbjct: 819 SAPGMSAQNQSSAWEEPEQTLAGLTLVITGNIPGFTRESAQLAVEDRGGKATGSVSKKTS 878

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +++ G   GSKL KA+ LG+ ++  E+F  LL++ 
Sbjct: 879 VVVAGTGAGSKLAKAEALGIPVIPAEEFPALLERG 913


>gi|213691626|ref|YP_002322212.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254781260|sp|B7GPV4|DNLJ_BIFLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|213523087|gb|ACJ51834.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457713|dbj|BAJ68334.1| DNA ligase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 921

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 157/508 (30%), Positives = 259/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFVSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GK---TSEIFAKGQ------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+    ++             +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGADHPRGTHDVVADQSQAYDLYTRWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + + +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGVLIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R       + F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----APAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 101/224 (45%), Gaps = 17/224 (7%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGD--VSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           PAD   ++   +T+ T + ++        +   ++D ++K R+  L R + +L IR +G 
Sbjct: 707 PADAVIVRVDHKTTRTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGP 766

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-----P 619
             AR +A            + ++ A        L  +  VG  IA+++V ++        
Sbjct: 767 PTARLIAS----------AMGSLAAIEKATIEDLTAIDGVGPEIAESVVNWFAATREPGD 816

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                + A              ++   +  K +V TG+L+   R  A+E + + G   + 
Sbjct: 817 WRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAG 876

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +S+KTD +++G N GSK  KA++LG+ ++ E QF  LL+  + 
Sbjct: 877 SVSKKTDYVVIGANAGSKAIKAEELGIPMLGEIQFAQLLETGSI 920


>gi|167041226|gb|ABZ05983.1| putative NAD-dependent DNA ligase adenylation domain protein
           [uncultured marine microorganism HF4000_001N02]
          Length = 727

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 182/745 (24%), Positives = 323/745 (43%), Gaps = 111/745 (14%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
             +  L Q +++H D YY  + P+I D+EYD L      +    P L          +++
Sbjct: 13  ARIEELAQLLAHHSDLYYNEAAPVITDAEYDLLFDELKRLDPTHPQL----------DRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      KV H  P  SL+K   + ++  F+ +     ++       F  +PK+DG+ 
Sbjct: 63  GSDPAPGSVKVEHLFPMQSLDKASEVAEISHFVAQTTAHGRR-------FVCQPKLDGSA 115

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ Y +G+ V AA RG+G  GEDV+A  R IP IP  L  +      +RGEV +    F
Sbjct: 116 LSLEYRRGRLVRAATRGNGERGEDVTANARRIPNIPESLGWD--GDCHIRGEVVMPLETF 173

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD---ITRYLNFFVHGL----------GK 245
            +              NPRN A+G LR+ +          L+F  +G+            
Sbjct: 174 RSKYASFAP-------NPRNLAAGSLRQKHVKAGKGDAADLSFHAYGVMFPGLDHKHPDS 226

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHG--------------IVSYYNEMKSI 291
            +        + +  +   G                             ++         
Sbjct: 227 PAPPDFNHDSQAIDWLTQNGIAAAGNEVVEAGVDEGIEEAEADEAVAEALLQVTENWARK 286

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R T  +++DG+V K+DEF  ++ LG+ A  PRW ++ KF  ++A+T LL +D Q GRTG 
Sbjct: 287 RDTADWELDGVVIKLDEFRKRELLGKTAHHPRWALAWKFPPEEATTVLLGVDWQTGRTGT 346

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVAR+ PV + G  + N TLHN   I+ L            I VGDRV + R G+VIP
Sbjct: 347 VTPVARVAPVRVSGVTVENTTLHNAGEIERL-----------GISVGDRVRITRRGDVIP 395

Query: 412 KVVDIIVN--------ERHPDAQPF----------SFPSFCPICQSRVVRDLNPKTGKLV 453
           K+V+++            H D  PF            P+ CP C+S +         +  
Sbjct: 396 KIVEVLGEATSADLDNRFHADGTPFADPLPLRRGVKIPANCPRCRSGL--------QEDG 447

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
           A  RC   L C ++    + ++    A  ++G+G++  +   +    A  ++   D++ L
Sbjct: 448 AFIRCFN-LECPSRLERSILYWC--RALEMDGIGEKLAEQLCE----AGLVKTLPDLYRL 500

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
             +      ++       + S  N+   ++  + + L  F+ +LG+  +G E+A   A+ 
Sbjct: 501 SGKDLEGLERMA------EKSAANVIAQLDDSKTLDLAAFLAALGLPGIGPELAGGFAQE 554

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
             S    +  +  ++A +      LIR+  VG+ +A + +   +       VE L+  ++
Sbjct: 555 IGS----STAMFELLADSEAAVERLIRIEGVGETVAGSFLSGLE--MRREMVEDLVDVLT 608

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
            +     +  S  +  +    TGTL +  R +    +   G  V + +S K D ++ G++
Sbjct: 609 ITDVEAVEK-SGSLTGQTFCITGTLTRP-RKEVALMIKAAGGKVVSAVSGKLDHLVAGES 666

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLL 718
            G KL+KA +L V +++E + L ++
Sbjct: 667 AGLKLDKANRLSVNVLSEAEVLSMI 691


>gi|126347877|emb|CAJ89597.1| putative DNA ligase [Streptomyces ambofaciens ATCC 23877]
          Length = 702

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 201/716 (28%), Positives = 330/716 (46%), Gaps = 87/716 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
               + D+ YD L R   A     PD      P+ P  K+ G        V H++P LSL
Sbjct: 35  GSSPLDDATYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 89

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E+   +   + R   ++ D    F + PK+DG  +  RY  G+      RGDG 
Sbjct: 90  DNVFSPEEFLAWTVSLARRTGREVD---RFVVGPKLDGLAVAARYRAGRLTRLITRGDGT 146

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P  L+   P  +E+RGE+ ++   F   N+     G +P+ANPRN
Sbjct: 147 AGEDVSHAIGTVEGLPETLAE--PVTVEIRGEILMTTAQFEHANEVRTGHGGQPFANPRN 204

Query: 219 AASGILRRLNPTDITRYLNFFVHG---LGKTSEIFAK-----GQYEMLQKMRCLGFPVNN 270
           AA+G LR       T  + FF +G   L +T  + A       Q +++     LG   + 
Sbjct: 205 AAAGTLRARE-RAYTVPMTFFGYGMLPLPETDAVLAGRLDDLAQSDLMSMAAGLGVHTSA 263

Query: 271 GVRQAN----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           G    +    T   +V+   E  ++R+ LP+ IDG+V K D  + ++  G  +R+PRW +
Sbjct: 264 GTAVPDVVVTTPEQVVARVRETAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAV 323

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K    +  TRLL+++  +GRTG++ P   LEPV I G+ IT ATLHN   I       
Sbjct: 324 AYKLPAVERITRLLEVEWNVGRTGVIAPRGVLEPVVIDGSTITYATLHNPADITR----- 378

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 R +R+GD V+V RAG+VIP++   + + R  D +P +FPS CP C S +     
Sbjct: 379 ------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGDERPIAFPSVCPRCGSDI----- 427

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                     RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +  
Sbjct: 428 ---DTSQERWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGATRVVQLVE----AGLVAD 478

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            AD+FTL R Q     ++         S  NL  ++   +   L R + +LG+R  G  +
Sbjct: 479 LADLFTLGREQLLGLDRMGQ------TSTDNLLAALAAAKEQPLSRVLCALGVRGTGRSM 532

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CA 624
           +R +A+++ +  +              D  ++ +V  +G   A +IV        +    
Sbjct: 533 SRRIARHFATMDHIRAA----------DADAMQQVEGIGPEKAPSIVAEIAELAPLIDKL 582

Query: 625 VEALLKEVSP--------SIGRHEKNVSSEI---------ENKKLVF----TGTLQKIQR 663
             A +    P             E++  S +            ++V     TG+L+K+ R
Sbjct: 583 AAAGVGMTEPGATPPPVTGADAEEEDGGSPVAAPGAAGPLAGMRVVVTGAMTGSLEKLSR 642

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++  E V + G   S+ +SRKT +++ G+  GSK  KA+QLG+++   E+F  L+ 
Sbjct: 643 NEMNELVERAGGHSSSSVSRKTTLVVAGEGAGSKRAKAEQLGIRLATPEEFAALVA 698


>gi|225572684|ref|ZP_03781439.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039920|gb|EEG50166.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM
           10507]
          Length = 622

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 181/683 (26%), Positives = 314/683 (45%), Gaps = 68/683 (9%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + + EYD L      +        +    N P  ++G +    L K TH  P LSL+K  
Sbjct: 1   MSNLEYDRLYDELVKLEQE----TKVILANSPTVQVGYQALDELPKETHETPMLSLDKTK 56

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           ++E+LR+FI                     K+DG  I + YE+GK   A  RG+G  GE 
Sbjct: 57  DMEELREFIGDHRSLL------------SWKLDGLTIVLTYEEGKLSKAVTRGNGIVGEV 104

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
           ++   R    IP  L++     + +RGE  I+ +DF  +N   IA     Y NPRN  SG
Sbjct: 105 ITNNARVFQNIP--LTIPYKGKLVLRGEAVITYSDFERINAS-IAQIEARYKNPRNLCSG 161

Query: 223 ILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQA-NTFH 279
            +R+L+      R + F    L    ++ F   +   ++ ++  GF V            
Sbjct: 162 SVRQLSNEITAKRNVQFLAFALVSAQDVDFRNSRDFQMRWLKSQGFDVVEYRIVTSENLE 221

Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL 339
             V Y++E    R+  P   DGLV   D+ +    LG  ++ PR   + K+A++   T L
Sbjct: 222 ESVQYFSEAVE-RNDFPS--DGLVAIYDDIAYGDSLGSTSKFPRNSYAFKWADETKETVL 278

Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGD 399
            +++    RTG++ PVA  EPV + G  ++ A++HN   +K L            + +GD
Sbjct: 279 KEMEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISILKELQ-----------LGIGD 327

Query: 400 RVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459
            + V +A  +IP++ + +       +   + P  CP+C     R +     +   +  C 
Sbjct: 328 HIQVYKANMIIPQIAENLTR-----SGNLTIPDACPVCGQEA-RVIKENEVE---SLYCM 378

Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
               C A++++    FVSRDA N+EGL +  L+           I    DIF L+R +  
Sbjct: 379 NP-QCQAKRIKAFTLFVSRDAMNVEGLSEATLEKLIAR----GFIHDFGDIFELERYR-- 431

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
              +I  + G G+ S  NL  SI K R+ +L + I+SLGI ++G   A+ + +++     
Sbjct: 432 --EQITEMEGLGEKSFDNLVSSIEKARDTTLPKMIYSLGIPNIGLANAKVICRHF----- 484

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
              ++  +   + D+      +  +G +IA+ +V F +N  N   +E L+  +   + + 
Sbjct: 485 -DYDLERLKNASEDEV---SGIDGIGPVIAKNLVRFLENEENQKKLEHLVSHLR--LEKP 538

Query: 640 EKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGS 696
            + +   +E    V TG+++    R+  +E + + G  V+  ++ KT  +I  D  +  S
Sbjct: 539 AETLKKSLEGLNFVITGSVEHFPNRNAVKEAIEEQGGKVTGTVTSKTSYLINNDTASSSS 598

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719
           K +KA+ LGV I++EE+FL +L 
Sbjct: 599 KNKKAKALGVPIISEEEFLEMLN 621


>gi|21225788|ref|NP_631567.1| DNA ligase [Streptomyces coelicolor A3(2)]
 gi|14495032|emb|CAC42149.1| putative DNA ligase [Streptomyces coelicolor A3(2)]
          Length = 723

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 200/713 (28%), Positives = 325/713 (45%), Gaps = 84/713 (11%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
               + D  YD L R   A     PD      P+ P  K+ G        V H++P LSL
Sbjct: 59  GSSPLDDDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 113

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E+   +   + R   + D     F++ PK+DG  +  RY +G+      RGDG 
Sbjct: 114 DNVFSPEEFTVWTASLAR---RIDREVTRFSVGPKLDGLAVAARYREGRLTRLITRGDGT 170

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P  L+   P  +EVRGE+ ++   F   N+  I  G +P+ANPRN
Sbjct: 171 AGEDVSHAIGTVEGLPGTLAE--PVTVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRN 228

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK--------GQYEMLQKMRCLGFPVNN 270
           AA+G LR       T  + FF +GL       A            E+++    LG   + 
Sbjct: 229 AAAGTLRAKE-RAYTVPMTFFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSA 287

Query: 271 GVRQAN----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           G    +    T   +V+   E+ ++R+ LP+ IDG+V K D  + ++  G  +R+PRW I
Sbjct: 288 GTAVPDVVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAI 347

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K    +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN   I       
Sbjct: 348 AYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADITR----- 402

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 R +R+GD V+V RAG+VIP++   + + R  + QP  FP  CP C S +     
Sbjct: 403 ------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGSDI----- 451

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                     RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +  
Sbjct: 452 ---DTSEERWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVAD 502

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            AD+F L+R Q  +  ++      G+ S  NL  ++ + +   L R + +LG+R  G  +
Sbjct: 503 LADLFLLRREQLLALERM------GETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSM 556

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CA 624
           +R +A+Y+ +  +              D  ++ RV  +G   A ++V        +    
Sbjct: 557 SRRIARYFATMDHIRAA----------DAEAMQRVDGIGVEKAPSVVAEIAELAPLIDRL 606

Query: 625 VEALLKEVSP--------------SIGRHEKNVSSEIENKKLVFTGT----LQKIQRHKA 666
             A +    P                          +   K+V TG     L+++ R++ 
Sbjct: 607 AAAGVNMTEPGATPPRPADTDGADGATAEAPGDGGPLAGMKVVVTGAMTGNLERLSRNEM 666

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            E + + G   S+ +S+ T +++ G+  GSK  KA+QLGV++   E+F  L+ 
Sbjct: 667 NELIERAGGRSSSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLVA 719


>gi|302668858|ref|YP_003832683.1| NAD-dependent DNA ligase LigA2 [Butyrivibrio proteoclasticus B316]
 gi|302397198|gb|ADL36101.1| NAD-dependent DNA ligase LigA2 [Butyrivibrio proteoclasticus B316]
          Length = 745

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 206/764 (26%), Positives = 342/764 (44%), Gaps = 82/764 (10%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           AL  + ++K+   L+ ++      YY    P + D EYD L  +  A     P       
Sbjct: 9   ALGEQLSKKDYEKLKNKLMDLARAYYDDDAPKVSDHEYDMLMVQLKACEKKNPSWVTD-- 66

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +     IGG  +    KVTH +P LS+E ++N E +++++  +     K +     FT+
Sbjct: 67  -DSISQVIGGTASSKFSKVTHDVPMLSIEDVFNKESVKEWMENV-----KTNYPDAGFTV 120

Query: 131 EPKIDGTMITIRYEKG-------------KFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
           E KIDG   T+RY+                 V A  RG+G  GEDV+  +  IP +P+ L
Sbjct: 121 EEKIDGLSCTLRYKTNDTEPYDEANCVCYDLVLAETRGNGIIGEDVTENVLQIPDVPKRL 180

Query: 178 SLN---IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233
            L+     +  +VRGE+Y+   +F   N++ +  GRKP ANPRN A+G LR+     +  
Sbjct: 181 FLSHDLYGDSFQVRGEIYMKHENFEKFNEKEVKAGRKPAANPRNLAAGTLRQKEAVLVKE 240

Query: 234 RYLNFFVHGL----GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
           R LN F+  +    G T +I  + QYE +Q ++  GF        A TF  + +  +E +
Sbjct: 241 RGLNMFIFRVQKVEGATRDILTRTQYEAMQILKKDGFKT-AICGFARTFEEVEALIDEYE 299

Query: 290 SIRST-LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
           + +     YDIDG V K+D    Q      ++     I++K+ +K+   R+ DID+ +GR
Sbjct: 300 THKDGRFGYDIDGAVVKIDVIEHQDDFSTSSKYIPGHIAYKYPQKEQKARVTDIDVALGR 359

Query: 349 TGILTPVARL------EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
           TG LT  A +      EP+ + G  ++  TLHN DYI+            R I +G    
Sbjct: 360 TGKLTFTAVVCDDETGEPLQMCGTSVSRVTLHNMDYIR-----------ERHIGIGGVYG 408

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           + ++GE+IPK+ + I  E     + F  P+ CP C S +V   +         + C+   
Sbjct: 409 IFKSGEIIPKLTETIYKE---PERLFEVPTVCPFCGSPIVNLGST-------DYFCSND- 457

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-- 520
            C  + +++L +FV RD  NIEGL  + + F         S   PA ++    +      
Sbjct: 458 NCKERAIQQLDYFVGRDQMNIEGLSIESIRFLDSKGYINAS--APASLYFQAEKWHEDGV 515

Query: 521 -------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                     +EN  G+ + SV NL  +I+K R     R + S G+ +VG   A+ L K 
Sbjct: 516 FAKLGKPEIHLENEDGWSEKSVENLVTAIDKSRTSDFIRVLASFGLPNVGHGQAKLLKKA 575

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---- 629
              +          +           ++   GD+I + + +F Q+  ++   +       
Sbjct: 576 IEKFDGKEANYFGRLLEMYKAGYDFSKIEGFGDVIKKTLNDFCQSILDLGIPDKDHTAQK 635

Query: 630 -----KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSR 683
                  V       +   +S +E    V TG+ +    R   ++ +  LG  VS  +S 
Sbjct: 636 YVDLLDAVDILFIEEKAAGASSLEGLTFVVTGSFENYKPRKLLEDEIESLGGKVSGTVSA 695

Query: 684 KTDIIIVGDNPGS--KLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           KT  +I  D   S  K +KA++LGVKI++E+++  +    N +L
Sbjct: 696 KTSYLINNDTTSSSGKNKKAKELGVKIISEQEYRAMAYLGNISL 739


>gi|289767058|ref|ZP_06526436.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
 gi|289697257|gb|EFD64686.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
          Length = 703

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 200/714 (28%), Positives = 325/714 (45%), Gaps = 84/714 (11%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
               + D  YD L R   A     PD      P+ P  K+ G        V H++P LSL
Sbjct: 39  GSSPLDDDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 93

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E+   +   + R   + D     F++ PK+DG  +  RY +G+      RGDG 
Sbjct: 94  DNVFSPEEFTVWTASLAR---RIDREVTRFSVGPKLDGLAVAARYREGRLTRLITRGDGT 150

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P  L+   P  +EVRGE+ ++   F   N+  I  G +P+ANPRN
Sbjct: 151 AGEDVSHAIGTVEGLPGTLAE--PVTVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRN 208

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK--------GQYEMLQKMRCLGFPVNN 270
           AA+G LR       T  + FF +GL       A            E+++    LG   + 
Sbjct: 209 AAAGTLRAKE-RAYTVPMTFFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSA 267

Query: 271 GVRQAN----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           G    +    T   +V+   E+ ++R+ LP+ IDG+V K D  + ++  G  +R+PRW I
Sbjct: 268 GTAVPDVVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAI 327

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K    +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN   I       
Sbjct: 328 AYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADITR----- 382

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 R +R+GD V+V RAG+VIP++   + + R  + QP  FP  CP C S +     
Sbjct: 383 ------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGSDI----- 431

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                     RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +  
Sbjct: 432 ---DTSEERWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVAD 482

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            AD+F L+R Q  +  ++      G+ S  NL  ++ + +   L R + +LG+R  G  +
Sbjct: 483 LADLFLLRREQLLALERM------GETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSM 536

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CA 624
           +R +A+Y+ +  +              D  ++ RV  +G   A ++V        +    
Sbjct: 537 SRRIARYFATMDHIRAA----------DAEAMQRVDGIGVEKAPSVVAEIAELAPLIDRL 586

Query: 625 VEALLKEVSP--------------SIGRHEKNVSSEIENKKLVFTGT----LQKIQRHKA 666
             A +    P                          +   K+V TG     L+++ R++ 
Sbjct: 587 AAAGVNMTEPGATPPRPADTDGADGATAEAPGDGGPLAGMKVVVTGAMTGNLERLSRNEM 646

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            E + + G   S+ +S+ T +++ G+  GSK  KA+QLGV++   E+F  L+  
Sbjct: 647 NELIERAGGRSSSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLVAD 700


>gi|166215594|sp|Q93IZ8|DNLJ2_STRCO RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
          Length = 700

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 200/713 (28%), Positives = 325/713 (45%), Gaps = 84/713 (11%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
               + D  YD L R   A     PD      P+ P  K+ G        V H++P LSL
Sbjct: 36  GSSPLDDDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 90

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E+   +   + R   + D     F++ PK+DG  +  RY +G+      RGDG 
Sbjct: 91  DNVFSPEEFTVWTASLAR---RIDREVTRFSVGPKLDGLAVAARYREGRLTRLITRGDGT 147

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P  L+   P  +EVRGE+ ++   F   N+  I  G +P+ANPRN
Sbjct: 148 AGEDVSHAIGTVEGLPGTLAE--PVTVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRN 205

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK--------GQYEMLQKMRCLGFPVNN 270
           AA+G LR       T  + FF +GL       A            E+++    LG   + 
Sbjct: 206 AAAGTLRAKE-RAYTVPMTFFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSA 264

Query: 271 GVRQAN----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           G    +    T   +V+   E+ ++R+ LP+ IDG+V K D  + ++  G  +R+PRW I
Sbjct: 265 GTAVPDVVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAI 324

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K    +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN   I       
Sbjct: 325 AYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADITR----- 379

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 R +R+GD V+V RAG+VIP++   + + R  + QP  FP  CP C S +     
Sbjct: 380 ------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGSDI----- 428

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                     RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +  
Sbjct: 429 ---DTSEERWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVAD 479

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            AD+F L+R Q  +  ++      G+ S  NL  ++ + +   L R + +LG+R  G  +
Sbjct: 480 LADLFLLRREQLLALERM------GETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSM 533

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CA 624
           +R +A+Y+ +  +              D  ++ RV  +G   A ++V        +    
Sbjct: 534 SRRIARYFATMDHIRAA----------DAEAMQRVDGIGVEKAPSVVAEIAELAPLIDRL 583

Query: 625 VEALLKEVSP--------------SIGRHEKNVSSEIENKKLVFTGT----LQKIQRHKA 666
             A +    P                          +   K+V TG     L+++ R++ 
Sbjct: 584 AAAGVNMTEPGATPPRPADTDGADGATAEAPGDGGPLAGMKVVVTGAMTGNLERLSRNEM 643

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            E + + G   S+ +S+ T +++ G+  GSK  KA+QLGV++   E+F  L+ 
Sbjct: 644 NELIERAGGRSSSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLVA 696


>gi|256783179|ref|ZP_05521610.1| DNA ligase [Streptomyces lividans TK24]
          Length = 690

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 200/714 (28%), Positives = 325/714 (45%), Gaps = 84/714 (11%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
               + D  YD L R   A     PD      P+ P  K+ G        V H++P LSL
Sbjct: 26  GSSPLDDDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 80

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E+   +   + R   + D     F++ PK+DG  +  RY +G+      RGDG 
Sbjct: 81  DNVFSPEEFTVWTASLAR---RIDREVTRFSVGPKLDGLAVAARYREGRLTRLITRGDGT 137

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P  L+   P  +EVRGE+ ++   F   N+  I  G +P+ANPRN
Sbjct: 138 AGEDVSHAIGTVEGLPGTLAE--PVTVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRN 195

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK--------GQYEMLQKMRCLGFPVNN 270
           AA+G LR       T  + FF +GL       A            E+++    LG   + 
Sbjct: 196 AAAGTLRAKE-RAYTVPMTFFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSA 254

Query: 271 GVRQAN----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           G    +    T   +V+   E+ ++R+ LP+ IDG+V K D  + ++  G  +R+PRW I
Sbjct: 255 GTAVPDVVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAI 314

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K    +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN   I       
Sbjct: 315 AYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADITR----- 369

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 R +R+GD V+V RAG+VIP++   + + R  + QP  FP  CP C S +     
Sbjct: 370 ------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGSDI----- 418

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                     RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +  
Sbjct: 419 ---DTSEERWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVAD 469

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            AD+F L+R Q  +  ++      G+ S  NL  ++ + +   L R + +LG+R  G  +
Sbjct: 470 LADLFLLRREQLLALERM------GETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSM 523

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CA 624
           +R +A+Y+ +  +              D  ++ RV  +G   A ++V        +    
Sbjct: 524 SRRIARYFATMDHIRAA----------DAEAMQRVDGIGVEKAPSVVAEIAELAPLIDRL 573

Query: 625 VEALLKEVSP--------------SIGRHEKNVSSEIENKKLVFTGT----LQKIQRHKA 666
             A +    P                          +   K+V TG     L+++ R++ 
Sbjct: 574 AAAGVNMTEPGATPPRPADTDGADGATAEAPGDGGPLAGMKVVVTGAMTGNLERLSRNEM 633

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            E + + G   S+ +S+ T +++ G+  GSK  KA+QLGV++   E+F  L+  
Sbjct: 634 NELIERAGGRSSSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLVAD 687


>gi|306818992|ref|ZP_07452709.1| NAD-dependent DNA ligase LigA [Mobiluncus mulieris ATCC 35239]
 gi|304648185|gb|EFM45493.1| NAD-dependent DNA ligase LigA [Mobiluncus mulieris ATCC 35239]
          Length = 917

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 200/935 (21%), Positives = 346/935 (37%), Gaps = 236/935 (25%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI------ILDSEYDALKRR 54
           M+K++ IP       Q + E   L  +I      YY    P       + D++YDAL  R
Sbjct: 1   MRKKREIPP------QIQNEHQELVAQIEAARADYY--DNPDEHGVTRLSDADYDALFVR 52

Query: 55  CDAIAHAFPDLARSEDPNG----------------------------PLNKIGGEMNLSL 86
              +  ++P L   + P                              P N +        
Sbjct: 53  LQLLEGSYPALVTPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENTVAVATTEGF 112

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
              TH+    S++ +++  ++  +  R+ +     +      + E K+DG  +++ Y  G
Sbjct: 113 PPHTHAKRMQSIDDVFSTAEVDAWWERVEKGL---EGKPFTVSAEVKVDGLAMSLTYVDG 169

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEM 205
           + +  A RGDG  GEDV+A +R I T+P+ L    IP ++E+RGEVY+   DF  +N E 
Sbjct: 170 QLMTGATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMNAER 229

Query: 206 IAVGR--------------------KPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
            A                         +ANPRNAA+G L++ +  +   R L F  HGLG
Sbjct: 230 EANNAAWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAHGLG 289

Query: 245 KTSEIF-----AKGQYEMLQKMRCLGFPVNNGVRQA--------NTFHGIVSYYNEMKSI 291
                         Q +  +++   G P      Q+         T   + +    M   
Sbjct: 290 AVQGWPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAMTEH 349

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R    + IDG+V KVD  + +  LG  AR+PRW  ++KF  ++  TRLL I++Q+GRTG 
Sbjct: 350 RHDFSHQIDGVVLKVDNLAARVLLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGRTGR 409

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TP A +E V + G+ ++ ATLHN   +             +D+R GD V++++AG++IP
Sbjct: 410 VTPFAVMERVLVDGSYVSRATLHNAKEVAR-----------KDVRPGDTVVLRKAGDIIP 458

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN------------------------- 446
           +V+  +++ R      +  P  CP C +R+ ++                           
Sbjct: 459 EVLGPVLSLRPRGLPEWVMPEMCPSCGTRLGQEKEGDIDLRCPNQAGCPAQITERLIHVG 518

Query: 447 --------------------PKTGKLVAAHRCTGGLACSAQQLERLKHFVSR--DAFNIE 484
                               P+ G+   A   + G +C  +    ++    +  +   IE
Sbjct: 519 ARGALDIEGLGEEGALALTQPEAGRADVAAALSAGGSCMLEDGTEIRVPAGKPLELGAIE 578

Query: 485 GLGKQQLDFFFKSEDPAFSIR--IPADIFTLQRRQQTSTTKIENILGFGDV--------- 533
            L     +   +SE   F ++     D+F  +    T+    + +  F            
Sbjct: 579 SLLPPTQEPVLRSEAGLFDLKSKDLRDVFVWREVPGTAGRDWQQVRFFWAKPKRVTAAEA 638

Query: 534 -----------------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                            +V   ++ +   R+    R + +L IRH+G   AR++A+ + +
Sbjct: 639 ATFGLVAGELGEPVAGKTVETFFNQLAAARSKETWRVLVALSIRHLGPVAARAVARKFPT 698

Query: 577 YQNFAQEINN----------IIAHNNDDWLSLIRVPLV---------------------- 604
               A               +IA +  DW  +     +                      
Sbjct: 699 LAAVAAADVEDLSQVEGVGTVIAASVVDWFRVPWHQEIVLAWTQAGLGLGSRDFGVGLAS 758

Query: 605 -----------GDIIAQAIVEFY---------------QNPRNICAVEALLKEVSPSIGR 638
                      G I      +F                  P N   +EA   +  P+   
Sbjct: 759 ASRGASPGVDSGGIQPDLFSDFGTGHVSGGGVESGQAPHEPANPGGIEASWGQNFPAAKG 818

Query: 639 ------------HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
                         +     +    LV TG +    R  AQ  V   G   +  +S+KT 
Sbjct: 819 SAPGMSAQNQSGAWEEPEQTLAGLTLVITGIIPGFTRESAQLAVEDRGGKATGSVSKKTS 878

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +++ G   GSKL KA+ LG+ ++  E+F  LL++ 
Sbjct: 879 VVVAGTGAGSKLAKAEALGIPVIPAEEFPALLERG 913


>gi|303252067|ref|ZP_07338236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649049|gb|EFL79236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 451

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 153/413 (37%), Positives = 246/413 (59%), Gaps = 19/413 (4%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP  L+  N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254
           F ALN+  +  G K +ANPRNAA+G LR+L+P     R L    +G+G  ++ +      
Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+ 
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKK 413


>gi|294669029|ref|ZP_06734115.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291309021|gb|EFE50264.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 730

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 219/768 (28%), Positives = 345/768 (44%), Gaps = 187/768 (24%)

Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160
           +++  ++  F  R+       D ++  + +EPK DG  I++ Y  G  V AA RGDG +G
Sbjct: 1   MFDHAEMYAFDQRVRDGL---DGSNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTG 57

Query: 161 EDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNA 219
           EDV+  ++ +  IP  L   N PE+IEVRGEV + K DF ALN      G+KP+ANPRNA
Sbjct: 58  EDVTQNVKTVANIPLRLHGENPPELIEVRGEVLMLKADFAALNKRQAENGQKPFANPRNA 117

Query: 220 ASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQAN 276
           A+G LR+L+      R L+FF + + +    F A+   + L   + LGF + N       
Sbjct: 118 AAGSLRQLDSRITAQRKLHFFPYSVARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFK 177

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
               ++++Y +M+  R  LPY+IDG+V KV+  + Q++LG  +R+PRW I+HKF  ++A 
Sbjct: 178 NIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEAL 237

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           T +  ID+QIGRTG +TPVARL PV +GG  +TNATLHN+D +             +D+R
Sbjct: 238 TIVEAIDVQIGRTGAVTPVARLHPVFVGGVTVTNATLHNQDEVSR-----------KDVR 286

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDA------------------------------- 425
           VGD V+V+RAG+VIP+VV +I   R                                   
Sbjct: 287 VGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDDLKQQQDDLFAETPSANQTQSVPL 346

Query: 426 -QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+  P+ CPIC+S + R+         A  RC+GG+ C AQ+ + L HF SR A +I+
Sbjct: 347 HKPYRLPTHCPICRSEIEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDID 400

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTL------QRRQQTSTTKIENILGFGD------ 532
           GLG++Q++     +     +R  AD++ L      + ++       EN  G  +      
Sbjct: 401 GLGQKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKGSSENENGDAETVSDDL 456

Query: 533 -------------VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
                            N+   I   +   L RF+F+LGIRHVG   A++LA+ + S ++
Sbjct: 457 SESNTPNGKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGSLEH 516

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA------------ 627
             +    I+A           +P +G ++A++I  F+        ++             
Sbjct: 517 VRRAPEPILAC----------LPDIGTVVARSIAHFFAQDAQQAMIDELLAAGVAPQTQA 566

Query: 628 ------------LLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQ---------RH 664
                             P     E    +  E+  K     G LQ  +         R 
Sbjct: 567 VTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKS--IDG-LQTDKALPADWQIWRS 623

Query: 665 KAQ-----EYVTQLGAVVSA-------------ILSRKTDIIIVGDNPGSKLEKAQ---- 702
           +AQ     E +    A  S+              ++ KT  ++ G  P  K ++AQ    
Sbjct: 624 EAQNAALLENLKSFFAQTSSENQEATISDDVNEAVAGKT-FVLTGTLPTLKRDQAQALIE 682

Query: 703 -------------------------------QLGVKIMNEEQFLFLLQ 719
                                           LGV +++EE+ L +L+
Sbjct: 683 AAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVAVLSEEELLAMLK 730


>gi|254389746|ref|ZP_05004971.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
 gi|197703458|gb|EDY49270.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 719

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 193/736 (26%), Positives = 305/736 (41%), Gaps = 72/736 (9%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
            L  ++A S   +R E  +  Q +      YY      + D+ YD L+R   A     P 
Sbjct: 35  TLPAVQAQSAVSSRTEYEAALQRLRDASRAYYGDGDSPLDDATYDQLRRSVLAWEQENPA 94

Query: 65  LARSEDPNGPLNKI--GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                 P+ P   +  G         V H+ P LSL+ + + E L  +   + R      
Sbjct: 95  EV---SPDSPTGLVADGAAPVGD---VAHTTPLLSLDNVSDAEGLTAWGLSVQRRLGHVP 148

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
                FT+EPK+DG  +  RY  G+ V    RG G  GEDVS  I  I  +P  L+L  P
Sbjct: 149 QGG--FTVEPKLDGAAVAARYRGGRLVQVITRGVGSHGEDVSHVIGQIDGLPEQLTL--P 204

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG 242
             +EVRGEV  ++  F   N+   A   + +ANPRN  +G LR    +   R + F+ +G
Sbjct: 205 VTVEVRGEVAFTQEQFETANEVRAAHNEQVFANPRNGVAGTLRAKGRSYQLR-MTFWAYG 263

Query: 243 LGKTSEIF----AKGQYEMLQKMRCLGFPV----NNGVRQANTFHGIVSYYNEMKSIRST 294
             +   +          E L  +  +G         G+             + + ++R+ 
Sbjct: 264 AVELDSVAYLPAGATHAETLAAVAAVGIQTTADSPAGLHVVADLASAQQRVDAIAAMRAG 323

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LP  IDG+V K+D+ + Q   G  +R P W I+ K    +  T L D+  ++GRTG+L P
Sbjct: 324 LPVGIDGVVVKLDDATEQAAAGVGSRFPHWAIAFKLPAVERQTVLEDVVWEVGRTGVLAP 383

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A L PV I G+ +T ATLHN   I+            RD+ +GD V V +AG++IP+V 
Sbjct: 384 TAILAPVEIDGSTVTRATLHNPADIRR-----------RDLHIGDAVTVFKAGDIIPRVQ 432

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R   A+    P  CP C   +         K     RC  G AC+      + +
Sbjct: 433 GPVAQLRPEGAREVPLPEVCPNCGGEI--------NKAQERWRCAKGTACA--LPALIGY 482

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
              R+  +IEGLGK  +    +S      +   AD+FTL   Q T+ +            
Sbjct: 483 AAGREMLDIEGLGKTYVAALVES----GYVTDIADLFTLSAEQLTTASGSA-------KR 531

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L + I   + + L R   +LG+   G  ++R +A+++    +  Q           D
Sbjct: 532 AAKLAEQIEAAKALPLSRVFCALGVLGTGRSMSRRIARHFGDMGSIRQA----------D 581

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQN-PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
             +L  V  +G   A  IVE   +    I  + A    ++          +  +  K +V
Sbjct: 582 AAALRDVEGIGPEKAPVIVEQVASLAPVIDKLIAAGVSMAEPREASPAGDAGPLAGKVVV 641

Query: 654 FTGT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDIII----VGDNPGSKLEKAQQLG 705
            TG     L    R +    + + G    + ++ KT I++     G  P +K  KA +LG
Sbjct: 642 VTGKMTGPLAAYARAEMTALIERAGGRAGSSVNAKTSILVAAPSAGGKPSTKAIKAAELG 701

Query: 706 VKIMNEEQFLFLLQQY 721
           V++   E F  L+  +
Sbjct: 702 VEVHTPEDFAELVADF 717


>gi|254383856|ref|ZP_04999203.1| DNA ligase [Streptomyces sp. Mg1]
 gi|194342748|gb|EDX23714.1| DNA ligase [Streptomyces sp. Mg1]
          Length = 696

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 186/723 (25%), Positives = 303/723 (41%), Gaps = 72/723 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E  +  + +      YY     ++ D+ YD L+    A     P       P  P   
Sbjct: 25  RSEYEAALRRLREASQAYYGDGDSVMDDASYDRLRLALLAWETEHPAEVA---PGSPTTL 81

Query: 78  I--GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +  G         V H+   LSL+ +++ E L  +   + R   +       FT+EPKID
Sbjct: 82  VADGAAPAGD---VAHTTRLLSLDNVFDAEGLVAWGASVERRLGRAPAGG--FTVEPKID 136

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +  RY  G+ V    RGDG  GED+S  I  I  +P +L+      +EVRGEV  ++
Sbjct: 137 GAAVAARYRGGRLVRIVTRGDGSQGEDISHVIGQIDGLPELLAGE--ATVEVRGEVAFTQ 194

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA---- 251
             F   N   +A G   +ANPRN  +G LR  +     R + F+ +G  +   +      
Sbjct: 195 EQFEVANAVRVAHGAPVFANPRNGTAGTLRAKDRPYRLR-MTFWAYGAVELEGVPFLPAG 253

Query: 252 KGQYEMLQKMRCLGFPVNN----GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             Q E L  +   G         G+   +   G     + M ++R+ LP  IDG+V K++
Sbjct: 254 ATQAEALAAVAAAGVRTTAAAGAGLHIVDDLAGAQQAVDAMAAMRAELPVGIDGVVIKLN 313

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+ +G   R P W I+ K    +  T L D+  ++GRTG+L P A L PV I G+ 
Sbjct: 314 DTAEQEAIGSGTRFPYWAIAVKLPAVERQTVLEDVVWEVGRTGVLAPTAVLAPVEIDGST 373

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +T ATLHN   I+            RD+ +GD V V +AG++IP+V   +   R   A+P
Sbjct: 374 VTRATLHNPADIRR-----------RDLHIGDTVTVYKAGDIIPRVQAAVALLRPAGAKP 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C   +               RC  G +C+      +++   R+  +I+GLG
Sbjct: 423 VPLPETCPRCGGEI--------NTAQERWRCAKGTSCA--LPALIEYAAGREMLDIDGLG 472

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K  +     S D    +   AD+FTL   Q T+ +               L + I   + 
Sbjct: 473 KTYVAALVDSGD----VTDVADLFTLTLEQLTAAS-------GSSRRAAKLAEQIEAAKA 521

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R   +LG+   G  ++R +A+++++ +   +           D   +  V  +G  
Sbjct: 522 RPLSRVFCALGVLGTGRSMSRRIARHFVTMEAIRRA----------DAAEMQDVEGIGPE 571

Query: 608 IAQAIVEFYQN-PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT----LQKIQ 662
            A  IVE        I  + A    +         +    ++ K +V TG     L+   
Sbjct: 572 KAPVIVEQVAALAPVIDKLIAAGVTLHEPEASATASAGGPLDGKVVVVTGKMAGPLEGFG 631

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIII----VGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +    + + G    + +S +T +++        P SK  KA +LGV+++  E F  L+
Sbjct: 632 RTEMNALIEKAGGRAGSGVSARTSVLVCAPSASGKPSSKAVKAAELGVEVLTPEAFAELV 691

Query: 719 QQY 721
             Y
Sbjct: 692 ADY 694


>gi|307700359|ref|ZP_07637399.1| DNA ligase (NAD+) [Mobiluncus mulieris FB024-16]
 gi|307614570|gb|EFN93799.1| DNA ligase (NAD+) [Mobiluncus mulieris FB024-16]
          Length = 917

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 200/935 (21%), Positives = 346/935 (37%), Gaps = 236/935 (25%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI------ILDSEYDALKRR 54
           M+K++ IP       Q + E   L  +I      YY    P       + D++YDAL  R
Sbjct: 1   MRKKREIPP------QIQNEHQELVAQIEAARADYY--DNPDEHGVTRLSDADYDALFVR 52

Query: 55  CDAIAHAFPDLARSEDPNG----------------------------PLNKIGGEMNLSL 86
              +  ++P L   + P                              P N +        
Sbjct: 53  LQLLEGSYPALVTPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENAVAVATTEGF 112

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
              TH+    S++ +++  ++  +  R+ +     +      + E K+DG  +++ Y  G
Sbjct: 113 PPHTHAKRMQSIDDVFSTAEVDAWWERVEKGL---EGKPFTVSAEVKVDGLAMSLTYVDG 169

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEM 205
           + +  A RGDG  GEDV+A +R I T+P+ L    IP ++E+RGEVY+   DF  +N E 
Sbjct: 170 QLMTGATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMNAER 229

Query: 206 IAVGR--------------------KPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
            A                         +ANPRNAA+G L++ +  +   R L F  HGLG
Sbjct: 230 EANNAAWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAHGLG 289

Query: 245 KTSEIF-----AKGQYEMLQKMRCLGFPVNNGVRQA--------NTFHGIVSYYNEMKSI 291
                         Q +  +++   G P      Q+         T   + +    M   
Sbjct: 290 AVQGWPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAMTEH 349

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R    + IDG+V KVD  + +  LG  AR+PRW  ++KF  ++  TRLL I++Q+GRTG 
Sbjct: 350 RHDFSHQIDGVVLKVDNLAARALLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGRTGR 409

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TP A +E V + G+ ++ ATLHN   +             +D+R GD V++++AG++IP
Sbjct: 410 VTPFAVMERVLVDGSYVSRATLHNAKEVAR-----------KDVRPGDTVVLRKAGDIIP 458

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN------------------------- 446
           +V+  +++ R      +  P  CP C +R+ ++                           
Sbjct: 459 EVLGPVLSLRPRGLPEWVMPEMCPSCGTRLGQEKEGDIDLRCPNQAGCPAQITERLIHVG 518

Query: 447 --------------------PKTGKLVAAHRCTGGLACSAQQLERLKHFVSR--DAFNIE 484
                               P+ G+   A   + G +C  +    ++    +  +   IE
Sbjct: 519 ARGALDIEGLGEEGALALTQPEAGRADVAAALSAGGSCMLEDGTEIRVPAGKPLELGAIE 578

Query: 485 GLGKQQLDFFFKSEDPAFSIR--IPADIFTLQRRQQTSTTKIENILGFGDV--------- 533
            L     +   +SE   F ++     D+F  +    T+    + +  F            
Sbjct: 579 SLLPPTQEPVLRSEAGLFDLKSKDLRDVFVWREVPGTAGRDWQQVRFFWAKPKRVTAAEA 638

Query: 534 -----------------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                            +V   ++ +   R+    R + +L IRH+G   AR++A+ + +
Sbjct: 639 ATFGLVAGELGEPVAGKTVETFFNQLAAARSKETWRVLVALSIRHLGPVAARAVARKFPT 698

Query: 577 YQNFAQEINN----------IIAHNNDDWLSLIRVPLV---------------------- 604
               A               +IA +  DW  +     +                      
Sbjct: 699 LAAVAAADVEDLSQVEGVGTVIAASVVDWFRVPWHQEIVLAWTQAGLGLGLRDFGVGLAS 758

Query: 605 -----------GDIIAQAIVEFY---------------QNPRNICAVEALLKEVSPSIGR 638
                      G I      +F                  P N   +EA   +  P+   
Sbjct: 759 ASRGASPGVDSGGIQPDLFSDFGTGHVSGGDVESGQAPHEPANPGGIEASWGQNFPAAKG 818

Query: 639 ------------HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
                         +     +    LV TG +    R  AQ  V   G   +  +S+KT 
Sbjct: 819 SAPGMSAQNQSGAWEEPEQTLAGLTLVITGNIPGFTRESAQLAVEDRGGKATGSVSKKTS 878

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +++ G   GSKL KA+ LG+ ++  E+F  LL++ 
Sbjct: 879 VVVAGTGSGSKLAKAEALGIPVIPAEEFPALLERG 913


>gi|326445394|ref|ZP_08220128.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 687

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 193/736 (26%), Positives = 305/736 (41%), Gaps = 72/736 (9%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
            L  ++A S   +R E  +  Q +      YY      + D+ YD L+R   A     P 
Sbjct: 3   TLPAVQAQSAVSSRTEYEAALQRLRDASRAYYGDGDSPLDDATYDQLRRSVLAWEQENPA 62

Query: 65  LARSEDPNGPLNKI--GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                 P+ P   +  G         V H+ P LSL+ + + E L  +   + R      
Sbjct: 63  EV---SPDSPTGLVADGAAPVGD---VAHTTPLLSLDNVSDAEGLTAWGLSVQRRLGHVP 116

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
                FT+EPK+DG  +  RY  G+ V    RG G  GEDVS  I  I  +P  L+L  P
Sbjct: 117 QGG--FTVEPKLDGAAVAARYRGGRLVQVITRGVGSHGEDVSHVIGQIDGLPEQLTL--P 172

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG 242
             +EVRGEV  ++  F   N+   A   + +ANPRN  +G LR    +   R + F+ +G
Sbjct: 173 VTVEVRGEVAFTQEQFETANEVRAAHNEQVFANPRNGVAGTLRAKGRSYQLR-MTFWAYG 231

Query: 243 LGKTSEIF----AKGQYEMLQKMRCLGFPV----NNGVRQANTFHGIVSYYNEMKSIRST 294
             +   +          E L  +  +G         G+             + + ++R+ 
Sbjct: 232 AVELDSVAYLPAGATHAETLAAVAAVGIQTTADSPAGLHVVADLASAQQRVDAIAAMRAG 291

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LP  IDG+V K+D+ + Q   G  +R P W I+ K    +  T L D+  ++GRTG+L P
Sbjct: 292 LPVGIDGVVVKLDDATEQAAAGVGSRFPHWAIAFKLPAVERQTVLEDVVWEVGRTGVLAP 351

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A L PV I G+ +T ATLHN   I+            RD+ +GD V V +AG++IP+V 
Sbjct: 352 TAILAPVEIDGSTVTRATLHNPADIRR-----------RDLHIGDAVTVFKAGDIIPRVQ 400

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R   A+    P  CP C   +         K     RC  G AC+      + +
Sbjct: 401 GPVAQLRPEGAREVPLPEVCPNCGGEI--------NKAQERWRCAKGTACA--LPALIGY 450

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
              R+  +IEGLGK  +    +S      +   AD+FTL   Q T+ +            
Sbjct: 451 AAGREMLDIEGLGKTYVAALVES----GYVTDIADLFTLSAEQLTTASGSA-------KR 499

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L + I   + + L R   +LG+   G  ++R +A+++    +  Q           D
Sbjct: 500 AAKLAEQIEAAKALPLSRVFCALGVLGTGRSMSRRIARHFGDMGSIRQA----------D 549

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQN-PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
             +L  V  +G   A  IVE   +    I  + A    ++          +  +  K +V
Sbjct: 550 AAALRDVEGIGPEKAPVIVEQVASLAPVIDKLIAAGVSMAEPREASPAGDAGPLAGKVVV 609

Query: 654 FTGT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDIII----VGDNPGSKLEKAQQLG 705
            TG     L    R +    + + G    + ++ KT I++     G  P +K  KA +LG
Sbjct: 610 VTGKMTGPLAAYARAEMTALIERAGGRAGSSVNAKTSILVAAPSAGGKPSTKAIKAAELG 669

Query: 706 VKIMNEEQFLFLLQQY 721
           V++   E F  L+  +
Sbjct: 670 VEVHTPEDFAELVADF 685


>gi|291448912|ref|ZP_06588302.1| DNA ligase [Streptomyces roseosporus NRRL 15998]
 gi|291351859|gb|EFE78763.1| DNA ligase [Streptomyces roseosporus NRRL 15998]
          Length = 710

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 203/719 (28%), Positives = 323/719 (44%), Gaps = 91/719 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
            +  + D  YD L R   A     P+   +     P  K+ G   +    V H++P LSL
Sbjct: 34  GESGLDDDAYDRLARGIAAYEADHPEEVLAA---SPTGKVAGGAAVG--DVPHTVPMLSL 88

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E    +   + R   +       +++EPK+DG  +  RY  G+F     RGDG 
Sbjct: 89  DNVFSAEQFATWTASLERRIGRPVT---AWSVEPKLDGLAVAARYRDGRFERLITRGDGT 145

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS    A+  +P  L+   P  IEVRGE+ ++ + F   N      G  P+ANPRN
Sbjct: 146 AGEDVSHAAGAVVGLPERLAE--PVTIEVRGEILMTNDQFDQGNAIRTEHGGAPFANPRN 203

Query: 219 AASGILRRLNPTDITRYLNFFVHGL------GKTSEIFAK-GQYEMLQKMRCLGFPVNNG 271
            A+G LR  +         FF +G       G+  E  A+    E+L  +  LG     G
Sbjct: 204 GAAGTLRAKD-RAYRVETTFFAYGALPLPDSGELGETLAELPHSEILSYVAGLGVHTAAG 262

Query: 272 V----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
                  A T   + +  + +  +R+ LP+ IDG+V K D  + Q++ G   R+PRW I+
Sbjct: 263 TDVAPVLAATVEEVQARVDAIGPLRAALPFGIDGIVIKADLAADQREAGSGTRAPRWAIA 322

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           +K    +  TRL+ ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I        
Sbjct: 323 YKLPAVEKITRLVSVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------ 376

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                RD+R+GD+V+V +AG++IP++   +V+ R  D  P  FP  CP C S +      
Sbjct: 377 -----RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIDFPESCPQCGSAI------ 425

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                    RCT G  C  + +  + +   RD  +IEGLG  ++         A  +   
Sbjct: 426 --DTSEQRWRCTRGRNC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADF 477

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
           AD+FTL+R Q  +  ++      G+ S  NL  +I   R   L R   +LG+R  G  ++
Sbjct: 478 ADLFTLEREQLLALDRM------GETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMS 531

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CAV 625
           R +A+Y+ +                 D  +L RV  +G   A A+V        +    V
Sbjct: 532 RRIARYFATMDRIVAA----------DVETLQRVDGIGKEKAAAVVAELAELAPLIAKLV 581

Query: 626 EALLKEVSPSIGRHEKNVSS----------------------EIENKKLVF----TGTLQ 659
            A +    P      +  +                        +    +V     TG L+
Sbjct: 582 AAGVNMTEPGATPPPEPGTEEEAAAAGADAEAGGEGGTGPTLPLAGMTVVVTGAMTGALE 641

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           K+ R++  E + + G   S+ +S++T +++ GD  GSK  KA+ LGV+I   E+F  L+
Sbjct: 642 KLSRNQMNELIERAGGKSSSSVSKRTSLLVAGDKAGSKRTKAEDLGVRIAVPEEFAELV 700


>gi|261337889|ref|ZP_05965773.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093]
 gi|270277364|gb|EFA23218.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093]
          Length = 906

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 164/517 (31%), Positives = 269/517 (52%), Gaps = 38/517 (7%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           K + + + AL  E+AR     +   +      YY  S PI  D+ YDA  R  +A+  A+
Sbjct: 27  KLETVDVPALGAERARTLWRKVASWVEADQVAYYIDSAPISSDAAYDARLRFLEAMERAY 86

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L   + P+ P +++GG  +     V      LSL+ +++I++LR++   +    Q  +
Sbjct: 87  PEL---DVPSSPTHRVGGSFSNEFVSVPQPSQMLSLDDVFSIQELREWYEGVRADLQWPE 143

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--- 179
              +  T E KIDG  + + Y  G       RGDG  GED++  +R I +IP  L+    
Sbjct: 144 GERLPMTCEVKIDGLALNLIYRDGVLSQGLTRGDGKIGEDITLNVRTISSIPGNLTEAGA 203

Query: 180 ---NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
              +IP ++E+RGEV++  + F ALN+     G+ P+ANPRNAA+G LR+ +P     R+
Sbjct: 204 SLGDIPHMVEIRGEVFMRWDTFHALNERNEQDGKTPFANPRNAAAGSLRQKDPRITAERH 263

Query: 236 LNFFVHGLGKTSEIFAK---------GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN 286
           L+F+ HG+G       K          Q +     +  G PV+   R   TF  I+   +
Sbjct: 264 LSFYAHGIGTLDWGEGKPVDAVDVVHDQSQAYDLYQRWGIPVSPHNRMVGTFDEILDMID 323

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346
                R  + + +DG+V KVD+ +LQ++LG+ +R+PRW I++K+  ++  T+L DI +++
Sbjct: 324 YYGQHRDDIEHPLDGIVVKVDDLALQRRLGQTSRAPRWAIAYKYPPEEVHTKLRDIIVEV 383

Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406
           GRTG +TP A L+PV + G+ ++  TLHN   +K            + I +GD V+V++A
Sbjct: 384 GRTGRITPAAVLDPVYVAGSTVSRTTLHNGYEVKR-----------KGILIGDIVVVRKA 432

Query: 407 GEVIPKVVDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
           G+VIP++V  ++  R       + F  P+ CP C + +  D+     +     RC    +
Sbjct: 433 GDVIPELVGPVIEARKGHEDQLREFQMPTTCPSCGATLEYDM-----EGGKDLRCPNHES 487

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           C AQ  ER+ +  SR AF+IE LG+Q        ED 
Sbjct: 488 CPAQLTERIINMGSRKAFDIEQLGEQSAVALTNPEDQ 524



 Score =  187 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 106/230 (46%), Gaps = 15/230 (6%)

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                P + +   A I   + ++    T ++        +  +L + I   ++  L+R +
Sbjct: 671 IAQRYPDYDVPADAVIVDERTKRVRGETSVQPQYVCPSETTRSLLEEIEHAKHAELDRVL 730

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +L IRHVG   AR +A+ + +         + +            VP +G  +AQAI++
Sbjct: 731 VALSIRHVGPPTARLIAQRFGTLDALMHASKDELE----------SVPGIGSEVAQAILD 780

Query: 615 FYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++ +       +   +                ++   +E K +V TG+LQ+  R  A+E 
Sbjct: 781 WFADADDPTSWHGSILARWKAAGVEMKAPESSSLPKTLEGKTVVVTGSLQQFTRDSAKEA 840

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +   G   +  +S+KTD +++G+  GSK +KA++LG+ +++E QF+ LL+
Sbjct: 841 IVNRGGKAAGSVSKKTDYVVIGEAAGSKAKKAEELGIPMLDEAQFVHLLE 890


>gi|225631070|ref|ZP_03787806.1| DNA ligase [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591237|gb|EEH12383.1| DNA ligase [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 508

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/536 (40%), Positives = 321/536 (59%), Gaps = 38/536 (7%)

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +EVRGE+YIS +DFL LN+         +ANPRNAA+G L++L+     +R L +F + 
Sbjct: 4   RLEVRGEIYISNSDFLKLNE------NDEFANPRNAAAGSLKQLDANITASRPLRYFAYS 57

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           L   +E   K Q E+L K+  LGF VN      ++  G++ +YNE+ + R  L YDIDG+
Sbjct: 58  LIGGAE---KSQSEVLNKLEALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGI 114

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKV++  LQ +LG   ++PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVN
Sbjct: 115 VYKVNDLVLQNRLGNTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVN 174

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG L++ A+LHN+D IK            +DIR GD V +KRAG+VIP++V++  + R 
Sbjct: 175 VGGVLVSRASLHNQDEIKR-----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRL 223

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P+   F FP  CP C S+V +          AA RC    AC AQ +E+LKHFVS+DAF+
Sbjct: 224 PNTPEFVFPEVCPECGSKVRQVEGE------AAVRCPEEFACKAQIIEKLKHFVSKDAFD 277

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I GLG +Q++FF+        I+   DIFTL+ R       +E   G+G  S+ +L ++I
Sbjct: 278 IVGLGDKQIEFFYD----LGLIKQIPDIFTLEER--LDEFNLEEQSGWGKKSIAHLLNAI 331

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
             RR I+L+RFIFSLGIR +G   A  LA YY+SY N+   +  +    + D   L+ + 
Sbjct: 332 QSRRVITLDRFIFSLGIRFIGQVAAELLADYYVSYDNWYNSMIEL----SSDNTELVGID 387

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G  +A+++  F+    NI  +  L   +   +     + +S + NK +VFTG L  + 
Sbjct: 388 GIGKKVAESLESFFSKEHNIKMLNDLTACLQI-LPVSSNSSNSVLNNKIIVFTGKLLAMS 446

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+     LGA VS+ LS KTD +I G+ PGSK +KA +LGV+I++E+Q+  ++
Sbjct: 447 RGEAKVRAKTLGAKVSSHLSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVI 502


>gi|239945456|ref|ZP_04697393.1| putative NAD-dependent DNA ligase [Streptomyces roseosporus NRRL
           15998]
 gi|239991920|ref|ZP_04712584.1| putative NAD-dependent DNA ligase [Streptomyces roseosporus NRRL
           11379]
          Length = 702

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 203/719 (28%), Positives = 323/719 (44%), Gaps = 91/719 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
            +  + D  YD L R   A     P+   +     P  K+ G   +    V H++P LSL
Sbjct: 26  GESGLDDDAYDRLARGIAAYEADHPEEVLAA---SPTGKVAGGAAVG--DVPHTVPMLSL 80

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E    +   + R   +       +++EPK+DG  +  RY  G+F     RGDG 
Sbjct: 81  DNVFSAEQFATWTASLERRIGRPVT---AWSVEPKLDGLAVAARYRDGRFERLITRGDGT 137

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS    A+  +P  L+   P  IEVRGE+ ++ + F   N      G  P+ANPRN
Sbjct: 138 AGEDVSHAAGAVVGLPERLAE--PVTIEVRGEILMTNDQFDQGNAIRTEHGGAPFANPRN 195

Query: 219 AASGILRRLNPTDITRYLNFFVHGL------GKTSEIFAK-GQYEMLQKMRCLGFPVNNG 271
            A+G LR  +         FF +G       G+  E  A+    E+L  +  LG     G
Sbjct: 196 GAAGTLRAKD-RAYRVETTFFAYGALPLPDSGELGETLAELPHSEILSYVAGLGVHTAAG 254

Query: 272 V----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
                  A T   + +  + +  +R+ LP+ IDG+V K D  + Q++ G   R+PRW I+
Sbjct: 255 TDVAPVLAATVEEVQARVDAIGPLRAALPFGIDGIVIKADLAADQREAGSGTRAPRWAIA 314

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           +K    +  TRL+ ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I        
Sbjct: 315 YKLPAVEKITRLVSVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------ 368

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                RD+R+GD+V+V +AG++IP++   +V+ R  D  P  FP  CP C S +      
Sbjct: 369 -----RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIDFPESCPQCGSAI------ 417

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                    RCT G  C  + +  + +   RD  +IEGLG  ++         A  +   
Sbjct: 418 --DTSEQRWRCTRGRNC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADF 469

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
           AD+FTL+R Q  +  ++      G+ S  NL  +I   R   L R   +LG+R  G  ++
Sbjct: 470 ADLFTLEREQLLALDRM------GETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMS 523

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CAV 625
           R +A+Y+ +                 D  +L RV  +G   A A+V        +    V
Sbjct: 524 RRIARYFATMDRIVAA----------DVETLQRVDGIGKEKAAAVVAELAELAPLIAKLV 573

Query: 626 EALLKEVSPSIGRHEKNVSS----------------------EIENKKLVF----TGTLQ 659
            A +    P      +  +                        +    +V     TG L+
Sbjct: 574 AAGVNMTEPGATPPPEPGTEEEAAAAGADAEAGGEGGTGPTLPLAGMTVVVTGAMTGALE 633

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           K+ R++  E + + G   S+ +S++T +++ GD  GSK  KA+ LGV+I   E+F  L+
Sbjct: 634 KLSRNQMNELIERAGGKSSSSVSKRTSLLVAGDKAGSKRTKAEDLGVRIAVPEEFAELV 692


>gi|300785073|ref|YP_003765364.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
 gi|299794587|gb|ADJ44962.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
          Length = 663

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 203/720 (28%), Positives = 332/720 (46%), Gaps = 80/720 (11%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A++ +  L   I+   D YY+   P++ D+EYDA++    ++  A P+     DPN PL
Sbjct: 2   NAQERIPELADRITVLRDAYYR-GSPLVADAEYDAVEDELRSLIEAHPEFTP--DPN-PL 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +++G    L    + HS P LSLEK    E +  F  R                + PK+D
Sbjct: 58  DQVGAPAVL-HAPIRHSRPMLSLEKATKPEQVEAFFDR---------FPGQPVVVMPKLD 107

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI-PTIPRVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G+   A  RGDG +G+DV+  +RA+   IP  +    P  +EVRGE  + 
Sbjct: 108 GLSLAVVYENGRLARAVTRGDGTTGDDVTKLVRALTDGIPEQVE--APGRVEVRGEAVML 165

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           ++ F A N    A   KP  NPRNAA+G LR  +P  +  R L FF   L    +     
Sbjct: 166 RSTFAAYN---TAHPDKPLINPRNAAAGTLRAKDPATVAERRLRFFAFDLYTEPDSAETD 222

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
               L  +          +R+        S   E++  R+ L YD+DG V ++       
Sbjct: 223 LGSALHTLGF----TAADMRRCADAAEAQSVIGEIEQQRNELDYDLDGAVLRLASRDAYA 278

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
             G R+ SPR  ++ KFA ++ +T L D+   +G+TG + PVA LEPV +GG  +T ATL
Sbjct: 279 AAGTRSSSPRGALAFKFAAEEKTTVLSDVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATL 338

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERHPDAQPFSFPS 432
            N++ I+            R I++GD VLV+RAG+VIP V  ++  ++R    +    P 
Sbjct: 339 ANQEVIRA-----------RGIKIGDTVLVRRAGDVIPFVAGVLDASKRTGAEREIVPPE 387

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +    N +         CT  ++C AQ + RL H+ SR A +I+ +G   ++
Sbjct: 388 VCPSCGQPLTEQGNSRE------LFCTN-VSCPAQTVRRLIHWASRAAADIDAIGGVWIE 440

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  +  P+D + L +       K+      G+VS T + +SI+  R + L R
Sbjct: 441 RLAE----AGILENPSDFYGLTK------EKLLEFDRIGEVSATRMIESIDASRGVGLRR 490

Query: 553 FIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            +  L I       A  L +  + S ++ A+   + +          + V  +G  +A +
Sbjct: 491 ALIGLAIPMASEGTAARLCRAGFGSLEDVAEAGVDGL----------VAVEDIGPKVAAS 540

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTL------QK 660
           ++E          +E L K       R E         + +  K +V TG +      +K
Sbjct: 541 LIEHLTRL--RPELERLRKAGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEK 598

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ-FLFLL 718
           + R   Q    + GA  +  +S  TD++I G + G SKL KA++ GV+++++ + +  L+
Sbjct: 599 VPRPTFQRLCERAGATTATSVSASTDLLITGADVGASKLTKAEKHGVEVVDQGEIWQQLI 658


>gi|255595065|ref|XP_002536222.1| DNA ligase, NAD-dependent, putative [Ricinus communis]
 gi|223520412|gb|EEF26161.1| DNA ligase, NAD-dependent, putative [Ricinus communis]
          Length = 491

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 189/529 (35%), Positives = 285/529 (53%), Gaps = 41/529 (7%)

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           ++K DF  +N E+ A G +  ANPRNAA+G LR+L+P    +R L F  +G G       
Sbjct: 1   MNKADFALVNAELAAKGEETKANPRNAAAGSLRQLDPKVTASRRLRFLAYGFGVCEGFEP 60

Query: 252 -KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E L  +  +GF +++         GI++++  +K+ R+ LP+DIDG+VYKV+   
Sbjct: 61  ADTQEEQLASLVQMGFEISHTNTVVKGAAGILAHFESVKATRADLPFDIDGVVYKVNSKK 120

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  +R+PRW I+ KF  ++A TR + I+ Q+GRTG LTPVARLEPV +GG  +TN
Sbjct: 121 QQDELGWNSRTPRWAIALKFPPEEAVTRCIAIEPQVGRTGPLTPVARLEPVFVGGVTVTN 180

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNE  +             +DIR+GD V+V+RAG+VIP++V  +   R      +  
Sbjct: 181 ATLHNEQEVHR-----------KDIRIGDHVIVRRAGDVIPEIVRSLPERRDGTETVYYT 229

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + V ++ +       AAHRCTGGL C+ Q+L  + HF SR A +IEGLG+  
Sbjct: 230 PAHCPTCGTPVHKEED------TAAHRCTGGLKCADQRLYAITHFASRLALDIEGLGEGT 283

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    +    A  I  P+ +F L   Q  +        G G  S   L  +I + R   L
Sbjct: 284 VTKLVE----AGLIERPSHLFALLPSQIAAL------PGEGKNSAAKLVAAIERTRAPEL 333

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI++LGI +VG   A++ A+++LS+  F     + +            +  VG   A 
Sbjct: 334 NRFIYALGIPNVGENSAKNFARHFLSFAAFKAATADELQA----------LEDVGPTTAA 383

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  F++N  N   VEAL++ V P       +  S +     V TGTL +  R   +  +
Sbjct: 384 SVRAFFENADNAAEVEALVECVQPKDVTVSTDSQS-LTGLTFVITGTLSR-DRESFKATI 441

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  VS  +S+KT+ ++ G   G+KL KAQ++GV I++E  F  LL 
Sbjct: 442 EAAGGKVSGSVSKKTNYLLAGAEAGTKLAKAQEMGVTILDEAAFDALLA 490


>gi|255994850|ref|ZP_05427985.1| DNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993563|gb|EEU03652.1| DNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 647

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 163/705 (23%), Positives = 304/705 (43%), Gaps = 67/705 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L   +S  +  YY  +  I+ + EYD L     A+      +  +     P   +G
Sbjct: 6   RMNELIDILSKANKAYYSDANEIMSNREYDELYDELQALEEESGIVLAA----SPTVNVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            E + SL K+ H    LSL K  ++++L +++                  L PK+DG  +
Sbjct: 62  YEASSSLEKMAHEKKMLSLNKTKSVDELVEWL------------GEQEGLLSPKLDGLTV 109

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            I Y++G    A  RGDG  GE ++   +    IP  L +     + +RGE YI+  DF 
Sbjct: 110 VITYDEGSLKLAVTRGDGVEGEVITKNAKTFIGIP--LKIPYAGRLVLRGEAYITYGDFN 167

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E+    +  Y NPRN  SG +R L+P+    R + F V  +    E     + E +
Sbjct: 168 KLNEEIDDAAK--YKNPRNLCSGSVRNLDPSITKERRVRFKVFSMLGGIEHGFNKKRECM 225

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  +GF V +   +  T   +    N +          +DGLV   D+      LGE 
Sbjct: 226 KWLGDIGFDVVH--TEMVTGENLKDTMNSLMEELQNGDIPVDGLVLTYDDIKTCNLLGET 283

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+ P+  I+ K++++   T L  ++    RTG++ PVA   PV I G  +  A LHN D 
Sbjct: 284 AKYPKDSIAFKWSDELYDTELTGVEWNTSRTGLVNPVAVFSPVEISGTTVKRAALHNLDI 343

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           + GL            +  GD++ V +A  +IP+V + I       +    +P  CP+C 
Sbjct: 344 LDGLA-----------LGKGDKIRVYKANMIIPQVYENITR-----SGNIEYPKVCPVCG 387

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +         +     RC     C A+  +R+ HF  +   NI+G+ ++ ++    + 
Sbjct: 388 CGL-----KLETEGARVLRCVND-DCPAKNAKRIVHFAGKSGINIKGISEKTIEKLIAT- 440

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                IR   D+  ++  +         + GF + S  NL  +I+  + ++L+RFI ++ 
Sbjct: 441 ---GIIRNEVDLLDIENYKDEIL----KLDGFKEKSFENLKKAIDGAKTMTLQRFISAMA 493

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
              +G   A  +A              +++         +  +  +G+++ ++ +    +
Sbjct: 494 FTGIGYTNAGKIAAALG---------FDVMKLFELTPEKINNIEGLGEVLTESFMAELSD 544

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVV 677
                 +  ++K          +  + E++ KK V TG +   + R   ++ +   G  V
Sbjct: 545 ENMKRRMREIIKRC--KFKEITRTRNDEVDGKKFVITGNVNIFKNRDDLKQKIEISGGQV 602

Query: 678 SAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +S  TD +I    ++  SK +KA++LG+ I++E+    +L +
Sbjct: 603 VSSVSSNTDFLINNDRESTSSKNKKAKELGIAIISEKDIAEMLGE 647


>gi|253797891|ref|YP_003030892.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435]
 gi|253319394|gb|ACT23997.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435]
          Length = 474

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 146/502 (29%), Positives = 239/502 (47%), Gaps = 31/502 (6%)

Query: 224 LRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           +R+ +P    R  L    HGLG          ++    +R  G PV+     A    G+ 
Sbjct: 1   MRQKDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVR 60

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
              +     R  + ++IDG+V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI
Sbjct: 61  ERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDI 120

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
            + +GRTG +TP A + PV + G+ +  ATLHN   IK            + + +GD V+
Sbjct: 121 RVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKR-----------KGVLIGDTVV 169

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           +++AG+VIP+V+  +V  R    + F  P+ CP C S +         +  A  RC    
Sbjct: 170 IRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPL-----APEKEGDADIRCPNAR 224

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522
            C  Q  ER+ H  SR+  +IE LG +      +++     I    ++F L  R    T 
Sbjct: 225 GCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTD 280

Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
                 G    +   L  +++K +   L R + +L IRHVG   AR+LA  + S    A 
Sbjct: 281 LFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAA 340

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
              + +A           V  VG  IA A+ E++    +   V+         +   +++
Sbjct: 341 ASTDQLAA----------VEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDES 390

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
           V   +    +V TG+L    R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA 
Sbjct: 391 VPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAV 450

Query: 703 QLGVKIMNEEQFLFLLQQYNTT 724
           +LGV I++E+ F  LL     +
Sbjct: 451 ELGVPILDEDGFRRLLADGPAS 472


>gi|32491184|ref|NP_871438.1| hypothetical protein WGLp435 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|81741654|sp|Q8D2B9|DNLJ_WIGBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|25166391|dbj|BAC24581.1| lig [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 591

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 188/616 (30%), Positives = 318/616 (51%), Gaps = 50/616 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + + ++ +L ++I   ++ YY  +  ++ D +YD+     + +   +             
Sbjct: 9   KIKTKILNLRKKIEMWNNNYYVKNLSLVSDEKYDSTLFELNELEKKYSMFLN----TSYS 64

Query: 76  NKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           NKI  + +     K+ H    LSLE I+N ++L  F  ++ +      +   ++  E KI
Sbjct: 65  NKIVAKNICNKFKKIKHLSNMLSLESIFNYKNLLNFHEKVKKNL--FYNEKRYYCCELKI 122

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEV 191
           DG  I + Y+ G    A+ RGDG  GEDV+     I +IP +L  N    P+ IE+RGEV
Sbjct: 123 DGLAINLIYKNGILDSASTRGDGLQGEDVTKNALEIKSIPHILKKNNLSFPKKIEIRGEV 182

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI- 249
           +I  + F  +N  + +  +K ++N RN ASG LR++NP     R L+F+ +G+G  +E  
Sbjct: 183 FIKLSTFNKINKMLKSKRKKLFSNARNMASGSLRQINPKITKNRSLSFYGYGIGYVNEKK 242

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           +   Q++ L+ +   G P+        + + + ++Y +   IR  L ++IDG+V KV+  
Sbjct: 243 YYYDQHDALKLINSWGIPIEKNTELCKSLNEVKNFYEKSIKIRDYLDFNIDGIVVKVNSM 302

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQK+LG  ++ PRW I++KF+ ++  T++L ++  +GRTG++TPVA+L+PV   G +I 
Sbjct: 303 KLQKKLGCSSKYPRWAIAYKFSSEEKCTKILGVNFNVGRTGVITPVAKLKPVYFMGTIIK 362

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ++LHN+D I  L            I + D V +K++G+VIPK+  +I  +R  + +   
Sbjct: 363 YSSLHNKDIIDKL-----------GIMINDTVCLKKSGDVIPKISRVIFEKR-KNVKEII 410

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  C  C+S++   L  K         CTGG  C AQ+ + L HFVSR+A NI+G+G +
Sbjct: 411 FPKTCIFCKSKIEFCLRKK------NLYCTGGFLCYAQRKQLLNHFVSREALNIKGMGNK 464

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    + +     I+ P+DIF L      +T KI  + G G  S  NL   I K +   
Sbjct: 465 IISQLIEKKI----IKYPSDIFKL------NTDKIIFLKGMGLKSSENLIKEIIKSKTTE 514

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R I+ +GI +VG   + +LA YY +  NF           N  +  L  +  +G   +
Sbjct: 515 LYRVIYGIGIPNVGIYTSMNLANYYKNISNF----------INTSYEDLRSIKGIGSFTS 564

Query: 610 QAIVEFYQNPRNICAV 625
             I +F ++ RNI  +
Sbjct: 565 NCIKKFLKDKRNISII 580


>gi|28493381|ref|NP_787542.1| DNA ligase [Tropheryma whipplei str. Twist]
 gi|28476422|gb|AAO44511.1| DNA ligase [Tropheryma whipplei str. Twist]
          Length = 634

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 183/670 (27%), Positives = 314/670 (46%), Gaps = 77/670 (11%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M  R+ +P     +++    +  L  +I      YYQ +  ++ D EYDAL+       H
Sbjct: 1   MTTRRNMPHPDGDLDR---RIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAEH 57

Query: 61  AFPDLARSEDPNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
           A        D N P   +G          V H  P LSL+ +++++ L  +  +  +   
Sbjct: 58  A----KGFSDRNSPSLTVGIAAQLNLFEPVKHIEPMLSLDNVFSLDQLHSWYEKTKKICP 113

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
             + +   F  E KIDG  +++RY  G  + AA RGDG  GED++  +  +P+IP  ++L
Sbjct: 114 --EGDQCTFVCELKIDGVGVSLRYANGYLISAATRGDGAIGEDITQNMLYVPSIPPRIAL 171

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--- 236
             P I E+RGE +I +++F  +N ++     K +ANPRN  SG +R   P    RYL   
Sbjct: 172 --PGIFEIRGEAFIKRDEFDRIN-QLSLERSKQFANPRNFVSGCIRTKTPN--MRYLESI 226

Query: 237 NFFVHG----LGKTSE----------------IFAKGQYEMLQKMRCLGFPVNNGVRQAN 276
           +F+ HG     G TS                     G +    ++     PVN+  R   
Sbjct: 227 SFYAHGFTQVYGYTSGGMNLHSDITASGGVKTEIEHGMFSAYSRLSECKIPVNSYNRLCT 286

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
            F  I SY   ++  R  +PY IDG+V K+D    Q  LG   ++PRW +++KF  +   
Sbjct: 287 NFSEIESYIENIRLNRQCVPYAIDGIVVKIDSLQKQALLGSTTKAPRWAVAYKFPSESTV 346

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           TRLLDI++ +GRTG +TP A L+P+ + G+ ++ ATLHN+  I           G +D+ 
Sbjct: 347 TRLLDIEVSVGRTGRVTPYAVLQPIQLDGSEVSRATLHNQKVI-----------GDKDLL 395

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           +GD V +++AG+++P+V+  +  +R      F  PS CP C + ++      +       
Sbjct: 396 IGDYVRIRKAGDIVPEVLCALPEKRDGSEVLFKMPSLCPSCGAELM-----PSKLGDIDL 450

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ------LDFFFKSEDPAFSIRIPADI 510
           RC    +C  Q   RL++  SR   +I  L ++       L  F KS +         D+
Sbjct: 451 RCPNMQSCLVQLAGRLEYIGSRGVLDIAYLAEENAYALSHLRKFGKSAEVQLFKITIDDL 510

Query: 511 FTLQRRQQTST-----TKIENILGFGD--VSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
             L+   + +       K ++  GF +   S  ++ DSI + +   L +F+ +L IRH+G
Sbjct: 511 VALEFMYKGNMRSPFRKKGDSFPGFEEPTKSAQDMVDSIERAKRSPLWKFLLALNIRHIG 570

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A++LA ++ S ++            N     L++V  +G+ IA ++ +++++P  + 
Sbjct: 571 PASAKALADHFGSIESI----------INAKIDELLKVRSLGETIAISVHDWFRDPWRVE 620

Query: 624 AVEALLKEVS 633
            V     + +
Sbjct: 621 LVNTWRSDGA 630


>gi|320533083|ref|ZP_08033816.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320134698|gb|EFW26913.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 825

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 157/503 (31%), Positives = 253/503 (50%), Gaps = 38/503 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
              AR+  S L ++I    D YY    ++  + D++YDAL R  + +  A P LAR+   
Sbjct: 33  PAAARERWSELVRDIEAARDAYYNAIDAESPLSDADYDALYRELEGLEAAHPLLARA--- 89

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P   +GG          H     SL+ ++++++++++  R+        D+ +  T E
Sbjct: 90  GSPTRSVGGRAITDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETG-VGDDELAMTAE 148

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            KIDG  + + YE G    AA RGDG +GEDV+  +R I ++P VL+ +  P ++EVRGE
Sbjct: 149 VKIDGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGDAHPSLLEVRGE 208

Query: 191 VYISKNDFLALNDEMIAVGRK----------PYANPRNAASGILRRLNPT-DITRYLNFF 239
           VY    +F + N+E      +           +ANPRNAA+G LR+ NP    +R L   
Sbjct: 209 VYFPTQEFESFNEERRTRNLQRQADGTPLLQVFANPRNAAAGSLRQKNPAVTASRPLAMI 268

Query: 240 VHGLGK----TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
            HG+G       E     Q+E  + +   G PV+             +Y     + R  L
Sbjct: 269 AHGVGAITPAPGEKLPTRQHEWYELLAGWGLPVSPYNTVVRGRAEREAYIERYATHRHDL 328

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            ++IDG+V+K+D+ SLQ++LG  +R PRW  ++K+  ++  TRLLDI +Q+GRTG +TP 
Sbjct: 329 IHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPF 388

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
             +EPV + G+ +  ATLHN   +             + +R+GD V+V++AG+VIP+++ 
Sbjct: 389 GMMEPVLVAGSTVARATLHNATEVAR-----------KGVRIGDMVIVRKAGDVIPEILG 437

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            +   R    + F  P+ CP C + +               RC    +C AQ  ER+ H 
Sbjct: 438 PVAELRDGSERDFVMPTHCPSCGTEL-----APAKDGDVDLRCPNTRSCPAQLTERIAHI 492

Query: 476 VSRDAFNIEGLGKQQLDFFFKSE 498
            SR A ++EGLG +      + +
Sbjct: 493 GSRGALDVEGLGDEAAGALTRPD 515



 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 97/239 (40%), Gaps = 16/239 (6%)

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                 +   P    R+    +T Q        K     G    + T +   + + R   
Sbjct: 592 VWRPVSRRGVPTGDWRLSRFFWTKQIYDADGRVKRATAPG---KNATAMISQLRQARTRP 648

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L +RHVG   AR+LA  + S +   Q           D   L  V  VG  IA
Sbjct: 649 LWRILVALSVRHVGPTAARALAARFRSLEALCQA----------DVAELAEVDGVGPTIA 698

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKA 666
           ++ V + +   +   +         +              +E   +V TG+L++  R  A
Sbjct: 699 ESWVRWREVDWHREILSRWEAAGVRTREETSDQQEEPARTLEGLTIVVTGSLERFTRDSA 758

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           +E +   G   S  +S+KT  ++VGD  GSK  KA+ LG+ I++E+ F+ LL+    ++
Sbjct: 759 KEAIVSRGGKASGSVSKKTSFVVVGDKAGSKESKARDLGLTILDEDGFVALLESGPQSV 817


>gi|302526819|ref|ZP_07279161.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
 gi|302435714|gb|EFL07530.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
          Length = 663

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 206/711 (28%), Positives = 332/711 (46%), Gaps = 79/711 (11%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             R+ +  L  +I    D YY+   P + D+EYDA++     +  A P+LA   DPN PL
Sbjct: 2   DVRERIQELADQIVALRDAYYR-GSPAVADAEYDAIEDELRGLIEASPELAP--DPN-PL 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +++GG   L    + HS P LSLEK    E +  F  R                + PK+D
Sbjct: 58  DQVGGPAVL-HAPIRHSRPMLSLEKATKPEQVEAFFDR---------FPGQAVVVMPKLD 107

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI-PTIPRVLSLNIPEIIEVRGEVYIS 194
           G  + + YE G+   A  RGDG +G+DV+  +RA+   +P  +S   P  +EVRGE  + 
Sbjct: 108 GLSLALVYEDGRLARAVTRGDGTTGDDVTMLVRALTDGVPHQVS--APGRVEVRGEAVML 165

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           ++ F A N    A   KP  NPRNAA+G LR  +P  +  R L FF   L          
Sbjct: 166 RSTFAAYN---TAHPDKPLINPRNAAAGTLRAKDPAAVAERRLRFFAFDLDTEPGSAET- 221

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++   +  LGF     +R+        +    ++  R+ L YDIDG V ++ + +   
Sbjct: 222 --DLGSGLLALGF-TAADMRRCADAASAQAVITAIEQQRNDLDYDIDGAVLRLADRAAYA 278

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
             G R+ SPR  +++KFA ++ +T L D+   +G+TG + PVA LEPV +GG  +T ATL
Sbjct: 279 AAGTRSSSPRGALAYKFAAEEKTTVLSDVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATL 338

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN-ERHPDAQPFSFPS 432
            N++ I+            R I++GD VLV+RAG+VIP V  ++   +R    +    PS
Sbjct: 339 ANQEVIRA-----------RGIKIGDTVLVRRAGDVIPFVAGVLDESKRTGAEREIVPPS 387

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C+  +    N +         CT  ++C AQ + RL H+ SR A +I+ +G   ++
Sbjct: 388 TCPSCEQPLTEQGNSRE------LFCTN-VSCPAQTVRRLIHWASRAAADIDAIGGVWIE 440

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  +  P+D + L +       ++      G+VS T + +SI+  R + L R
Sbjct: 441 RLAE----AGILEHPSDFYRLTK------ERLLEFDRIGEVSATRMIESIDASRQVGLRR 490

Query: 553 FIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            +  L I       A  L +  + S +       + +          + V  +G  +A +
Sbjct: 491 ALIGLAIPMASEGTAARLCRAGFASLEAVLDAGVDGL----------VEVEDIGPKVAAS 540

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTL------QK 660
           +VE          +E L +         E         + +E K +V TG +      +K
Sbjct: 541 LVEHLTRL--RPELERLRERGVSLDVLEEDLPPAVVAGAPLEGKTVVVTGAISDPRSGEK 598

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + R   Q      GA  ++ +S  TD++I G + G SKL KA++LGV++++
Sbjct: 599 VPRPTFQRLCETAGATTASSVSASTDLLITGADVGASKLTKAEKLGVEVVD 649


>gi|332755049|gb|EGJ85414.1| DNA ligase, NAD-dependent [Shigella flexneri 4343-70]
          Length = 421

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 161/456 (35%), Positives = 261/456 (57%), Gaps = 40/456 (8%)

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            PV++ V    +   ++++Y++++  R TL +DIDG+V KV+    Q+QLG  AR+PRW 
Sbjct: 1   MPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWA 60

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++NATLHN D I+ L   
Sbjct: 61  VAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERL--- 117

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +R+GD+V+++RAG+VIP+VV+++++ER  D +   FP+ CP+C S V R  
Sbjct: 118 --------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVE 169

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RCTGGL C AQ+ E LKHFVSR A +++G+G + +D   + E     + 
Sbjct: 170 GE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKE----YVH 219

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
            PAD+F L   + T   ++      G     N+ +++ K +  +  RF+++LGIR VG  
Sbjct: 220 TPADLFKLTAGKLTGLERM------GPKLAQNVVNALEKAKETTFARFLYALGIREVGEA 273

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A  LA Y+ + +          A        L +VP VG ++A  +  F+    N   +
Sbjct: 274 TAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVI 323

Query: 626 E---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
               A        I  + + + S    K +V TG+L ++ R  A+  + +LGA V+  +S
Sbjct: 324 SELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVS 383

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 384 KKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 419


>gi|326774207|ref|ZP_08233489.1| DNA ligase, NAD-dependent [Actinomyces viscosus C505]
 gi|326636346|gb|EGE37250.1| DNA ligase, NAD-dependent [Actinomyces viscosus C505]
          Length = 818

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 162/554 (29%), Positives = 264/554 (47%), Gaps = 49/554 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
              AR+  S L ++I    D YY    ++  + D++YD L R  + +  A P LAR+   
Sbjct: 33  PTAARERWSELVRDIEAARDAYYNAIDAESPLSDADYDTLYRELEGLEAAHPLLARA--- 89

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P   +GG          H     SL+ ++++++++++  R+        D+ +  T E
Sbjct: 90  GSPTRSVGGRAVTDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETG-VGDDELAMTAE 148

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            KIDG  + + YE G    AA RGDG +GEDV+  +R I ++P VL+ +  P ++EVRGE
Sbjct: 149 VKIDGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGDAHPSLLEVRGE 208

Query: 191 VYISKNDFLALNDEMIAVG----------RKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           VY    DF A N+E                + +ANPRNAA+G LR+ NP    +R L   
Sbjct: 209 VYFPTQDFEAFNEERRTRNVQRQADGAPLLQVFANPRNAAAGSLRQKNPAVTASRPLAMI 268

Query: 240 VHGLGK----TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
            HG+G       E     Q+E  + +   G PV+             +Y     + R  L
Sbjct: 269 AHGVGAITPAPGESLPTRQHEWYELLAGWGLPVSPYNAVVRGRVEREAYIERYAAHRHDL 328

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            ++IDG+V+K+D+ SLQ++LG  +R PRW  ++K+  ++  TRLLDI +Q+GRTG +TP 
Sbjct: 329 IHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPF 388

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
             +EPV + G+ +  ATLHN   +             + +R+GD V+V++AG+VIP+++ 
Sbjct: 389 GMMEPVLVAGSTVARATLHNATEVAR-----------KGVRIGDMVIVRKAGDVIPEILG 437

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            + + R    + F  P+ CP C + +               RC    +C AQ  ER+ H 
Sbjct: 438 PVADLRDGSERDFVMPTHCPSCGTEL-----APAKDGDVDLRCPNTRSCPAQLTERIAHI 492

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            SR A ++EGLG +      +            D   L+     +  +     G      
Sbjct: 493 GSRGALDVEGLGDEAAGALTR-----------PDAGRLEALTALAAGRSLETEGGRLSLP 541

Query: 536 TNLYDSINKRRNIS 549
               +S++  + + 
Sbjct: 542 PGELESLHVSQRVE 555



 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 16/239 (6%)

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                 +   P    R+    +T Q        K     G    + T +   + + R+  
Sbjct: 592 VWRPVSRRGVPTGDWRLSRFFWTKQTYDADGRVKKATAPG---KNATAMLSQLRQARSRP 648

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L +RHVG   AR+LA  + S +   Q           D   L  V  VG  IA
Sbjct: 649 LWRILVALSVRHVGPTAARALAARFRSLEALCQA----------DVAELAEVDGVGPTIA 698

Query: 610 QAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++   + +   +   +   EA            ++  +  +E   +V TG+L+   R  A
Sbjct: 699 ESWARWREVDWHREILSRWEAAGVRTREEDSEEQEEPARTLEGLTVVVTGSLEGFTRDSA 758

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           +E +   G   S  +S+KT  ++VGD  GSK  KA++LG+ I++EE F+ LL+     +
Sbjct: 759 KEAIVSRGGKASGSVSKKTSFVVVGDKAGSKETKARELGLTILDEEGFVALLEGGPQAV 817


>gi|329946006|ref|ZP_08293693.1| DNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528454|gb|EGF55432.1| DNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 811

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 162/554 (29%), Positives = 264/554 (47%), Gaps = 49/554 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYY--QYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
              AR+    L ++I    D YY    ++  + D++YD L R  + +  A P LAR+   
Sbjct: 24  PAGARERWGELVRDIEAARDAYYNAVDAESSLSDADYDVLYRELEDLEAAHPLLARA--- 80

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P   +GG          H     SL+ ++++++++++  R+       DD  +  T E
Sbjct: 81  GSPTRSVGGRAITDFTPAPHHERMYSLQDVFSLDEVQEWAERMMAETGVADD-DLAMTAE 139

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            KIDG  + + YE G    AA RGDG +GEDV+  +R I ++P VLS +  P ++EVRGE
Sbjct: 140 VKIDGLAVALTYENGILTRAATRGDGTTGEDVTGNVRTIASVPLVLSGDAHPSLLEVRGE 199

Query: 191 VYISKNDFLALND-------EMIAVGRKP---YANPRNAASGILRRLNPT-DITRYLNFF 239
           VY    +F A N+       +  A G      +ANPRNAA+G LR+ NP    +R L   
Sbjct: 200 VYFPTQEFEAFNEDRRTRNVQRQADGAPLLQVFANPRNAAAGSLRQKNPAITASRPLAMI 259

Query: 240 VHGLGK----TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
            HG+G       E     Q+E  + +   G PV+             +Y     + R  L
Sbjct: 260 AHGVGAITPAPGERLPARQHEWYELLAGWGLPVSPYNTVVRGRAEREAYIERYATHRHDL 319

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            ++IDG+V+K+D+ SLQ++LG  +R PRW  ++K+  ++  TRLLDI +Q+GRTG +TP 
Sbjct: 320 IHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPF 379

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
             +EPV + G+ +  ATLHN   +             + +R+GD V+V++AG+VIP+++ 
Sbjct: 380 GMMEPVLVAGSTVARATLHNATEVAR-----------KGVRIGDMVIVRKAGDVIPEILG 428

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            + + R    + F+ P+ CP C + +               RC    +C AQ  ER+ H 
Sbjct: 429 PVADLRDGTERDFAMPTHCPSCGTEL-----APAKDGDVDLRCPNTRSCPAQLTERIAHI 483

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            SR A ++EGLG +      +            D    +     +  K  +         
Sbjct: 484 GSRGALDVEGLGDEAAGALTR-----------PDAGRREALTALAAGKSLDTERGRLALP 532

Query: 536 TNLYDSINKRRNIS 549
               D+++  + + 
Sbjct: 533 AGELDALHASQRVE 546



 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 16/239 (6%)

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                 +   P    R+    +T Q        K   + G    +   +   +   R   
Sbjct: 583 VWRPVSRRGVPTGDWRLSRFFWTKQTYDADGRVKKATVPG---KNAIAMLSQLRDARTRP 639

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L +RHVG   AR+LA  + S +               D   L  V  VG  IA
Sbjct: 640 LWRILVALSVRHVGPTAARALAARFRSLETLCHA----------DVAELAEVDGVGSTIA 689

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKA 666
           ++ V +     +   +         +              ++   +V TG+L+   R  A
Sbjct: 690 ESWVRWRDVDWHREILNRWEAAGVRTREEASDQQEEPARTLDGLTVVVTGSLEGFTRDSA 749

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           +E +   G   S  +SRKT  +IVGD  GSK  KA++LG+ I++EE F+ LL+     +
Sbjct: 750 KEAIVSRGGKASGSVSRKTSFVIVGDKAGSKEAKARELGLTILDEEGFVSLLEGGPQAV 808


>gi|166216282|sp|Q83G99|DNLJ_TROWT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 628

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 180/652 (27%), Positives = 307/652 (47%), Gaps = 74/652 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L  +I      YYQ +  ++ D EYDAL+       HA        D N P   +
Sbjct: 10  RRIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAEHA----KGFSDRNSPSLTV 65

Query: 79  G-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G          V H  P LSL+ +++++ L  +  +  +     + +   F  E KIDG 
Sbjct: 66  GIAAQLNLFEPVKHIEPMLSLDNVFSLDQLHSWYEKTKKICP--EGDQCTFVCELKIDGV 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++RY  G  + AA RGDG  GED++  +  +P+IP  ++L  P I E+RGE +I +++
Sbjct: 124 GVSLRYANGYLISAATRGDGAIGEDITQNMLYVPSIPPRIAL--PGIFEIRGEAFIKRDE 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHG----LGKTSE-- 248
           F  +N ++     K +ANPRN  SG +R   P    RYL   +F+ HG     G TS   
Sbjct: 182 FDRIN-QLSLERSKQFANPRNFVSGCIRTKTPN--MRYLESISFYAHGFTQVYGYTSGGM 238

Query: 249 --------------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
                             G +    ++     PVN+  R    F  I SY   ++  R  
Sbjct: 239 NLHSDITASGGVKTEIEHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQC 298

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           +PY IDG+V K+D    Q  LG   ++PRW +++KF  +   TRLLDI++ +GRTG +TP
Sbjct: 299 VPYAIDGIVVKIDSLQKQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSVGRTGRVTP 358

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A L+P+ + G+ ++ ATLHN+  I           G +D+ +GD V +++AG+++P+V+
Sbjct: 359 YAVLQPIQLDGSEVSRATLHNQKVI-----------GDKDLLIGDYVRIRKAGDIVPEVL 407

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +  +R      F  PS CP C + ++      +       RC    +C  Q   RL++
Sbjct: 408 CALPEKRDGSEVLFKMPSLCPSCGAELM-----PSKLGDIDLRCPNMQSCLVQLAGRLEY 462

Query: 475 FVSRDAFNIEGLGKQQ------LDFFFKSEDPAFSIRIPADIFTLQRRQQTST-----TK 523
             SR   +I  L ++       L  F KS +         D+  L+   + +       K
Sbjct: 463 IGSRGVLDIAYLAEENAYALSHLRKFGKSAEVQLFKITIDDLVALEFMYKGNMRSPFRKK 522

Query: 524 IENILGFGD--VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            ++  GF +   S  ++ DSI + +   L +F+ +L IRH+G   A++LA ++ S ++  
Sbjct: 523 GDSFPGFEEPTKSAQDMVDSIERAKRSPLWKFLLALNIRHIGPASAKALADHFGSIESI- 581

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
                     N     L++V  +G+ IA ++ +++++P  +  V     + +
Sbjct: 582 ---------INAKIDELLKVRSLGETIAISVHDWFRDPWRVELVNTWRSDGA 624


>gi|28572508|ref|NP_789288.1| DNA ligase [Tropheryma whipplei TW08/27]
 gi|81629879|sp|Q83HX4|DNLJ_TROW8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28410640|emb|CAD67026.1| DNA ligase [Tropheryma whipplei TW08/27]
          Length = 628

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 180/652 (27%), Positives = 307/652 (47%), Gaps = 74/652 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L  +I      YYQ +  ++ D EYDAL+       HA        D N P   +
Sbjct: 10  RRIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAEHA----KGFSDRNSPSLTV 65

Query: 79  G-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G          V H  P LSL+ +++++ L  +  +  +     + +   F  E KIDG 
Sbjct: 66  GIAAQLNLFEPVKHIEPMLSLDNVFSLDQLHSWYEKTKKICP--EGDQCTFVCELKIDGV 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++RY  G  + AA RGDG  GED++  +  +P+IP  ++L  P I E+RGE +I +++
Sbjct: 124 GVSLRYANGYLISAATRGDGAIGEDITQNMLYVPSIPPRIAL--PGIFEIRGEAFIKRDE 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHG----LGKTSE-- 248
           F  +N ++     K +ANPRN  SG +R   P    RYL   +F+ HG     G TS   
Sbjct: 182 FDRIN-QLSLERSKQFANPRNFVSGCIRTKTPN--MRYLESISFYAHGFTQVYGYTSGGM 238

Query: 249 --------------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
                             G +    ++     PVN+  R    F  I SY   ++  R  
Sbjct: 239 NLHSDITASGGVKTEIEHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQC 298

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           +PY IDG+V K+D    Q  LG   ++PRW +++KF  +   TRLLDI++ +GRTG +TP
Sbjct: 299 VPYAIDGIVVKIDSLQKQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSVGRTGRVTP 358

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A L+P+ + G+ ++ ATLHN+  I           G +D+ +GD V +++AG+++P+V+
Sbjct: 359 YAVLQPIQLDGSEVSRATLHNQKVI-----------GDKDLLIGDYVRIRKAGDIVPEVL 407

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +  +R      F  PS CP C + ++      +       RC    +C  Q   RL++
Sbjct: 408 CALPEKRDGSEVLFKMPSLCPSCGAELM-----PSKLGDIDLRCPNMQSCLVQLAGRLEY 462

Query: 475 FVSRDAFNIEGLGKQQ------LDFFFKSEDPAFSIRIPADIFTLQRRQQTST-----TK 523
             SR   +I  L ++       L  F KS +         D+  L+   + +       K
Sbjct: 463 IGSRGVLDIAYLAEENAYALSHLRKFGKSAEVQLFKITIDDLVALEFMYKGNMRSPFRKK 522

Query: 524 IENILGFGD--VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            ++  GF +   S  ++ DSI + +   L +F+ +L IRH+G   A++LA ++ S ++  
Sbjct: 523 GDSFPGFEEPTKSAQDMVDSIERAKRSPLWKFLLALNIRHIGPASAKALADHFGSIESI- 581

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
                     N     L++V  +G+ IA ++ +++++P  +  V     + +
Sbjct: 582 ---------INAKIDELLKVRSLGETIAISVHDWFRDPWRVELVNTWRSDGA 624


>gi|145218922|ref|YP_001129631.1| DNA ligase, NAD-dependent [Prosthecochloris vibrioformis DSM 265]
 gi|145205086|gb|ABP36129.1| DNA ligase, NAD-dependent [Chlorobium phaeovibrioides DSM 265]
          Length = 488

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 170/528 (32%), Positives = 267/528 (50%), Gaps = 42/528 (7%)

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K DF ALND      R  +ANPRNA +G L+  +  ++  R L F  + L    +   
Sbjct: 1   MRKEDFTALNDTRPEEDR--FANPRNATAGTLKLQDSAEVAVRRLWFVAYYLDGIQDPDT 58

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +  LQ +   GF      R       I ++       R  LPY+ DG+V K+++   
Sbjct: 59  P-HFHRLQLLETAGFFTGGHYRLCKGMQEIAAFIARWNEERWHLPYETDGVVLKLNDVRQ 117

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            K LG  ++SPRW I++K+  +QA+T L D+  Q+GR G +TPVA LEPV + G+ ++ +
Sbjct: 118 WKTLGATSKSPRWAIAYKYPAQQATTVLRDVVFQVGRLGTITPVAELEPVRLAGSTVSRS 177

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D ++ L            I +GDRV+++++GEVIPKV+ ++   R  DA+    P
Sbjct: 178 TLHNFDEMRRL-----------GIMIGDRVVIEKSGEVIPKVIRVVTEARPVDARLVELP 226

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C + +VR+             C     C AQ   R+ HF SR+A +I+ LG+  +
Sbjct: 227 SRCPACSTPIVREEGE------VGFYCPNEAGCPAQLKGRILHFASRNAMDIQNLGEALV 280

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           +  P D++ LQ  Q        N+   G  S  N+  ++++ R+ S  
Sbjct: 281 EQLV----AFGLVHDPGDLYFLQEPQL------RNLERMGPKSAQNVVRALDESRSQSYA 330

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F+LGIRHVG   AR LA+ + S          I A        L  V  +G +IA++
Sbjct: 331 RLLFALGIRHVGQATARELARAFPS----------IEALEAASEEELADVADIGPVIARS 380

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I E+++ P     +E L     P      K  ++S  E   +VFTG L +  R  A E V
Sbjct: 381 IREWFEAPAVSALLEKLRDARLPLAAEDPKPLINSNFEGLSVVFTGALLRHDRQSASELV 440

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + G  + + +S+KT +++ G   GSKLEKA +LG+++++EE+F  +L
Sbjct: 441 LERGGKIVSTVSKKTGLVVAGREAGSKLEKALKLGLRVISEEEFEAML 488


>gi|256377071|ref|YP_003100731.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
 gi|255921374|gb|ACU36885.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
          Length = 674

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 200/719 (27%), Positives = 331/719 (46%), Gaps = 73/719 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A + +  L   +    D YY+   P++ D+EYDA +    ++  A P+L    DPN PL
Sbjct: 10  NAEERIRDLADRVVSLRDAYYR-GSPLVADAEYDATEDELRSLIAANPELTP--DPN-PL 65

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +++G    L    V H+ P LSLEK    E +  F+ R                + PK+D
Sbjct: 66  DQVGAPAVL-HAPVRHARPMLSLEKATQPEQVAAFLDR---------FPGQPVVVMPKLD 115

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT-IPRVLSLNIPEIIEVRGEVYIS 194
           G  +++ YE G  + A  RGDG +G+DV+  +RA+   +P  +    P  +EVRGE  + 
Sbjct: 116 GLSLSLVYEGGALLRAVTRGDGTTGDDVTPLVRALADGVPTRV--PAPGRVEVRGEAVML 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
           ++ F A N+   A   KP  NPRNAA+G LR  +P  +  R L F    L   +E  A  
Sbjct: 174 RSTFTAYNE---AHPDKPLINPRNAAAGTLRAKDPATVAGRRLRFLAFELDTDAEAGAGV 230

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ + +R LGF     +R A            +++ R+ L YD+DG V ++ +     
Sbjct: 231 GADLEEGLRALGF-TPADMRHAADAEAAQRVITGIETGRADLDYDLDGAVLRLADRRAYA 289

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
             G R+ SPR  ++ KFA ++ +T L+D+   +G+TG + PVA LEPV +GG  +T ATL
Sbjct: 290 AAGTRSNSPRGALAFKFAAEEKTTLLVDVVWDVGKTGKVVPVAHLEPVFVGGTTVTRATL 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERHPDAQPFSFPS 432
            N++ IK            R + VGD VLV+RAG+VIP V  ++   +R  + +    PS
Sbjct: 350 ANQEVIKA-----------RGVMVGDTVLVRRAGDVIPFVAGVLDAAKRTGEEREIVPPS 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +    N +         CT  ++C+AQ + RL H+ SR A +I+ +G   ++
Sbjct: 399 TCPSCDQPLTEQGNSRE------LFCTN-VSCAAQTVRRLIHWASRAAADIDAIGPVWIE 451

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F +    A  +  P+D + L + Q             G+ S T + +SI   R + L R
Sbjct: 452 RFAE----AGLLEHPSDFYLLTKEQLL------EFERVGETSATRMIESIAASRAVGLRR 501

Query: 553 FIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            +    +       A  L +  + S +  A      +          + V  +G  +A +
Sbjct: 502 ALIGFAVPMASEGTATRLCRAGFGSLEEVADAGEERL----------VEVEDIGPKVAAS 551

Query: 612 IVEFYQN-PRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQ------ 662
           + E        +  +      +          V+S   +  K +V TG +   +      
Sbjct: 552 LTEHLARLRPELTRLRQRGVSLDVRDEDLPPVVASDAPLAGKTVVITGAISDPRSGEKVA 611

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQ-FLFLLQ 719
           R   Q    + GA  ++ +S  TD++I G   G+ K  KA++LGV ++++ + +  L+ 
Sbjct: 612 RPAFQRLCEKAGATTASSVSANTDMLITGAEVGAGKTAKAEKLGVAVVDQGEIWAQLIA 670


>gi|116514984|ref|YP_802613.1| DNA ligase [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285620|sp|Q058C9|DNLJ_BUCCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116256838|gb|ABJ90520.1| DNA ligase [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 587

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 195/626 (31%), Positives = 323/626 (51%), Gaps = 42/626 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++    ++  L+ +I YH+  Y+    PII D  YD L  +   +   +      +    
Sbjct: 1   MKDIYNQILKLQLQIKYHNYMYHTLDSPIISDILYDELYNKLLQLEKLYFKKKSLDKKIK 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
            L+++G +      +  H IP LSL  I NI D   F  +I  +++    N I +  + K
Sbjct: 61  LLDQVGAKKLHIFTEFFHKIPMLSLRSINNISDFDLFDKKIKEYFKHI--NVITYFCDFK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
            DG  + + Y+ G  + A+ RG+G  GE+++  I  I +IP+ +   NIP+ IE+RGE++
Sbjct: 119 FDGLAVNLFYKNGILISASTRGNGSVGENITKNILMISSIPKKIAGSNIPKKIEIRGEIF 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS-EIF 250
           + K+DF  LN      G+K ++NPRNAA+G +R+LNP  +  R LNFFV+G G       
Sbjct: 179 MRKSDFFILNQSCKLSGKKEFSNPRNAAAGSVRQLNPEIVKKRKLNFFVYGFGLFDYNKK 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ L +++  GFP+            ++ +Y+    IRS L ++IDG+V K+D   
Sbjct: 239 IDSHYQRLLQIKKWGFPLYKNYCVCKNKKEVIHFYHYANKIRSQLDFEIDGIVIKLDSIK 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG   + P+W I+ KF      T++  I  ++GRTGI+TPVA   P+N+ G  I+ 
Sbjct: 299 LQNNLGCIEKYPKWAIALKFFSLDKETKIFKISFKVGRTGIITPVAYFFPINLFGVSISK 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+L+N   IK L           DIR+ D V V RAG+VIPK+ ++++++R+   Q    
Sbjct: 359 ASLYNIKTIKLL-----------DIRLHDYVTVYRAGDVIPKIRNVLIHKRNKYTQKIII 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P++CP C ++++   + KT        C    +C +Q ++RL +F S++  N +GLGK+ 
Sbjct: 408 PTYCPSCCTKLIFSDDLKT------CYCPASFSCFSQNVKRLIYFSSKNGLNFKGLGKKN 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            +  P D F+L         K++NI   GD     +  +I   + +SL
Sbjct: 462 IIKLIN----YGYLYTPIDFFSLT------VKKLKNIFRMGDKLSEKIIKNIAFSKRVSL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++FI SLGI  VG  IA+ LA YY S + F           N ++ +L ++  +G  I+ 
Sbjct: 512 DKFICSLGIFGVGTSIAKRLAYYYRSVEKFF----------NTNYDTLSKIDHIGYNISN 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI 636
           AI+ F +N  N   +  L++ ++  I
Sbjct: 562 AIISFLKNKSNRSIILKLIRILNIFI 587


>gi|4235382|gb|AAD13194.1| NAD-dependent DNA ligase [Thermus sp. SM32]
          Length = 481

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 174/483 (36%), Positives = 268/483 (55%), Gaps = 35/483 (7%)

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           +  +   DL+ F  R+ R   +  +    +T+E K+DG  + + YE+G  V+ A RGDG 
Sbjct: 1   DNAFTHHDLKAFEDRVDRALGR--EGPFVYTVEHKVDGLSVNLYYEEGILVFGAPRGDGE 58

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
            GE+V+  +  IPTIPR L   +PE +EVRGEVY+    FL LN+E+   G K + NPRN
Sbjct: 59  VGEEVTQNLLTIPTIPRRLK-GVPERLEVRGEVYMPIEAFLRLNEELEEAGEKVFKNPRN 117

Query: 219 AASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276
           AA+G LR+ +P     R L    + LG    E   K QYE L   +  GFPV +G  +A 
Sbjct: 118 AAAGSLRQKDPRITAKRGLRATFYALGLGLEESGLKTQYEFLLWFKEKGFPVEHGFARAT 177

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
              G+   Y      R  LP++ DG+V K+DE +L ++LG  AR+PR+ I++KF  ++  
Sbjct: 178 GAEGVERVYQGWLQKRRKLPFEADGVVVKLDELALWRELGYTARAPRFAIAYKFPAEEKE 237

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           TRLLD+  Q+GRTG +TPV  LEPV I G+ ++  TLHNE YI+ L           DIR
Sbjct: 238 TRLLDVVFQVGRTGRVTPVGILEPVLIEGSEVSRVTLHNESYIEEL-----------DIR 286

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           +GD VLV +AG VIP+V+ ++   R    +P  +P  CP C   +V++           H
Sbjct: 287 IGDWVLVHKAGGVIPEVLRVLKERRTGAERPIVWPENCPECGHHLVKE--------GKVH 338

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RC   L C A++ E ++H+ SR A +I+GLG++ ++   ++      ++  AD++ L++ 
Sbjct: 339 RCPNPL-CPAKRFEAIRHYASRKAMDIQGLGEKLIEKLLEN----GLVKDVADLYRLRKE 393

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                 ++      G+ S  NL   I + ++  LER +++LG+  VG  +AR+LA  + +
Sbjct: 394 DLVGLERM------GEKSAENLLRQIEESKHRGLERLLYALGLPGVGEVLARNLAARFGT 447

Query: 577 YQN 579
              
Sbjct: 448 MDR 450


>gi|322379711|ref|ZP_08054024.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS5]
 gi|321147860|gb|EFX42447.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS5]
          Length = 762

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 197/777 (25%), Positives = 338/777 (43%), Gaps = 95/777 (12%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L  ++  +   YY  + P+I D+ YD L R+       +P       P  P  ++
Sbjct: 6   EDYKHLVDKLCQYAYHYYVLASPLISDAIYDQLYRQVLDYETKYPQNIL---PYSPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY----------RFWQKKDDNSIF- 127
           GG +  +L K TH +   SLE ++N+E+L+ +I RI           R  Q     S   
Sbjct: 63  GGVVLETLPKHTHKVRMWSLENVFNLEELQVWINRIVESEHALKTKGRISQTYPSASFTR 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT  PK+DG  + + YE G+   A++RG+G  GE V+   + I +IP ++    P  IE+
Sbjct: 123 FTCSPKLDGASLNLYYENGQLQSASMRGNGLEGELVTHNAKTIHSIPLIIPYTKP--IEI 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV + + DF ALN E +      +AN RNA  G LR+L+      R L F+  GLG  
Sbjct: 181 RGEVVLQREDFKALNAERLKQNLPLFANARNATVGSLRQLDSKIAAQRKLTFYPWGLGLV 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E +     + +Q ++  GF ++       +   I   +    + RS + +D DG+V  +
Sbjct: 241 EEKY-TSLKQSMQMVKDWGF-LSLEFVLCESLEAIEETFKLFHTRRSEVTFDADGMVVML 298

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+  LQ  LG   +SPR+  ++KF   +  T+LLD+  Q+GR+G +TPVA LEP+ + GA
Sbjct: 299 DDLYLQSILGFTIKSPRFGFAYKFPATEKHTKLLDVLNQVGRSGAITPVALLEPIKLEGA 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+ ATL N   I+            + + + D V++ R+G+VIPK++  + + R+   +
Sbjct: 359 CISKATLDNYTQIQ-----------QQGLMINDTVVIVRSGDVIPKIIKPLKHLRNGTQK 407

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEG 485
           P + P+ CP CQS + +       +             C   Q+   K+        + G
Sbjct: 408 PITPPTHCPACQSVLQKQPLNVCPECNLPLLLKNKPNFCPKCQILFKKYTHCPVCQTLLG 467

Query: 486 LGKQQLDFFFKSED-PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
              ++          P   ++   D+  L+         + N   +      +    + +
Sbjct: 468 KQHKKCPQCQSDVTFPKHCLQCGGDL-ELKEYCYRCDLDLSNKDRYLFCPNKDCIARVKE 526

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYL------------------------SYQNF 580
                  +    L I+ +G ++   L +  L                          QN 
Sbjct: 527 SIVYFASK--HGLEIKGLGDKVVAQLLQAGLIKGVIDLYSLEEKALLELEGWQQKKAQNL 584

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY------QNPRNICAVE-------- 626
            Q I          ++S + +  +G   ++ + + +      +  + I ++E        
Sbjct: 585 LQAITKSKQAPLWRFISALGIEHIGKGASKILAQHFGLEVFDKTYQEIASLEGFGAKGLK 644

Query: 627 ---------------------ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
                                  L  +   I   +K   S  ++KK+V TG+L+K  R +
Sbjct: 645 EEEKKIAASFVRFVKENKGLIKQLLTLVNPIATEKKITPSFFKDKKIVITGSLEKP-RTE 703

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
               +  LGA V   +S KTD++I G+NPGSKLEKA++LG+++M E  FL  L+   
Sbjct: 704 ISALLESLGAHVQTGVSSKTDLLIYGENPGSKLEKAKKLGIEVMEEVTFLERLKSEG 760


>gi|282877678|ref|ZP_06286493.1| NAD-dependent DNA ligase domain protein [Prevotella buccalis ATCC
           35310]
 gi|281300250|gb|EFA92604.1| NAD-dependent DNA ligase domain protein [Prevotella buccalis ATCC
           35310]
          Length = 657

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 172/707 (24%), Positives = 304/707 (42%), Gaps = 66/707 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+++  L +E++   D YY      + D E+DA       +       +    P+ P   
Sbjct: 6   RQKMQQLVEELNRASDNYYSGRTESMTDFEWDAKFDELKRLEQE----SGLVLPDSPTTN 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +         K  H  P LSL K    E+L K+                   L  K+DG 
Sbjct: 62  VSDGTITG-QKEAHEFPMLSLAKTKKPEELVKWAE------------ERPIWLSWKLDGL 108

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y+ GK      RG+GH G +++    AI  IP  +  +    + +RGE  IS  D
Sbjct: 109 TLVVTYDDGKLTKVVTRGNGHVGTNITHLAPAIQGIPATIKNS--GHLVIRGEAVISYAD 166

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256
           F   N E        YANPRN ASG L   +  ++ R  + +    L  T E       E
Sbjct: 167 FEVFNMEADEA----YANPRNLASGSLTLKDVEEVKRRKIQWIPFTLVFTDEA-INSWGE 221

Query: 257 MLQKMRCLGFPVNNGVRQAN-TFHGIVSYYNEMKSI--RSTLPYDIDGLVYKVDEFSLQK 313
            L  +R +GF V    R ++ + H +     +  ++   +  P+ +DGLV   D+ +   
Sbjct: 222 RLDWLREMGFNVVKHERISDPSIHNVNQAIEQWTNLVTHNQCPFPVDGLVITFDDTAFAA 281

Query: 314 QLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                     R  ++ K+ ++ A+T L  I+        ++PVA  +PV + G  +  A+
Sbjct: 282 TGSITGHHATRAGLAFKWEDEAATTELEYIEWSCAA-STISPVAVFKPVELEGTTVKKAS 340

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L N    + L   G           G  + V +A ++IPKV+ ++             P 
Sbjct: 341 LCNISECERLGIGG----------PGSVLSVIKANKIIPKVIKVV-----QTVGALEIPH 385

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +   D++  +G       CT   AC A+QL++   FVS++  +I+G+ +Q L 
Sbjct: 386 ECPVCHHQTRIDISKASGTRT--LHCTNE-ACPAKQLKKFNRFVSKNGMDIDGISEQTLA 442

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         +   ADI+ L    Q    +I ++ GFG+ S  N+  SI K R +   +
Sbjct: 443 KFIN----LGWLNTYADIYRLPNYAQ----QIASLEGFGNKSAGNMMRSIEKSRTVEARK 494

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++L I   G +  + L   Y  ++  ++ I        D   +   +P +G   + ++
Sbjct: 495 FLYALTIPMCGVDACKRLLDAYSLHELISKAIEA------DTPEAFANIPGIGPETSASV 548

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVT 671
           V+++Q   N   V+ LLK ++       +   +  E    V TG +   + R + + Y+ 
Sbjct: 549 VKWFQVEANRNVVDDLLKTLNVE-QPSTQPTGARCEGLTFVITGDVHHYKNRAELKAYIE 607

Query: 672 QLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716
             G  V+  +S+ T+ +I    ++   K +KA++LG++I++E+QF  
Sbjct: 608 NQGGHVTGSVSKSTNYLINNNVNSTSGKNKKAKELGIEIISEDQFRE 654


>gi|325068288|ref|ZP_08126961.1| DNA ligase (NAD(+)) [Actinomyces oris K20]
          Length = 818

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 156/503 (31%), Positives = 254/503 (50%), Gaps = 38/503 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
              AR+  S L ++I    D YY    ++  + D++YD L R  + +  A+P LAR+   
Sbjct: 33  PSAARERWSELVRDIEAARDAYYNAIDAESPLSDADYDLLYRELEGLEAAYPLLARA--- 89

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P   +GG          H     SL+ ++++++++++  R+        D+ +  T E
Sbjct: 90  GSPTRSVGGRAVTDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETG-VGDDELAMTAE 148

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            KIDG  + + YE G    AA RGDG +GEDV+  +R I ++P VL+ +  P ++EVRGE
Sbjct: 149 VKIDGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGDAHPSLLEVRGE 208

Query: 191 VYISKNDFLALNDEMIAVGRK----------PYANPRNAASGILRRLNPT-DITRYLNFF 239
           VY    +F A N+E   +  +           +ANPRNAA+G LR+ NP    +R L   
Sbjct: 209 VYFPTQEFEAFNEERRTLNLQRQADGAPLLQVFANPRNAAAGSLRQKNPAVTASRPLAMI 268

Query: 240 VHGLGK----TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
            HG+G       E     Q+E  + +   G  V+             +Y     + R  L
Sbjct: 269 AHGVGAITPAPGERLPTRQHEWYELLAGWGLAVSPYNAVVRGRAEREAYIERYATHRHDL 328

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            ++IDG+V+K+D+ SLQ++LG  +R PRW  ++K+  ++  TRLLDI +Q+GRTG +TP 
Sbjct: 329 IHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPF 388

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
             +EPV + G+ +  ATLHN   +             + +R+GD V+V++AG+VIP+++ 
Sbjct: 389 GMMEPVLVAGSTVARATLHNATEVAR-----------KGVRIGDMVIVRKAGDVIPEILG 437

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            + + R    + F  P+ CP C + +               RC    +C AQ  ER+ H 
Sbjct: 438 PVADLRDGSERDFVMPTHCPSCGTEL-----APAKAGDVDLRCPNTRSCPAQLTERIAHI 492

Query: 476 VSRDAFNIEGLGKQQLDFFFKSE 498
            SR A ++EGLG +      + +
Sbjct: 493 GSRGALDVEGLGDEAAGALTRPD 515



 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 16/239 (6%)

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                 +   P    R+    +T Q        K   + G    + T +   + + R+  
Sbjct: 592 VWRPVSRRGVPTGDWRLSRFFWTKQTYDADGRVKKATVPG---KNATAMLSQLRQARSRP 648

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L +RHVG   AR+LA  + S +   Q           D   L  V  VG  IA
Sbjct: 649 LWRILVALSVRHVGPTAARALAARFRSLEALCQA----------DVAELAEVDGVGPTIA 698

Query: 610 QAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++ V + +   +   +   EA            ++  +  +E   +V TG+L+   R  A
Sbjct: 699 ESWVRWREVDWHREILSRWEAAGVRTWEEDSEEQEEPARTLEGLTVVVTGSLEGFTRDSA 758

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           +E +   G   S  +S+KT  ++VGD  GSK  KA++LG+ I++EE F+ LL+     +
Sbjct: 759 KEAIVSRGGKASGSVSKKTSFVVVGDKAGSKETKARELGLTILDEEGFVALLEGGPQAV 817


>gi|115379272|ref|ZP_01466385.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
 gi|115363713|gb|EAU62835.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 443

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 248/426 (58%), Gaps = 27/426 (6%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +L P++   ++ A      L +E+++H+  YY    P + D+EYD L R    +   FP 
Sbjct: 39  RLPPVD---LKTAETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPA 95

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           LA    P+ P  ++GGE      KV H  P LSL  ++N E+  +F  RI +     D  
Sbjct: 96  LA---TPDSPTQRVGGEAAEKFAKVVHRAPMLSLANVFNDEEFTEFDERIRKVVGPAD-- 150

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLN 180
            + +  EPK+DG  IT+RYE G+F+  A RGDG +GEDV+  +R +  +P  L     + 
Sbjct: 151 -VTYVCEPKLDGLAITLRYENGRFLQGATRGDGTTGEDVTGNLRTVRPLPLELLPEAGMA 209

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P ++EVRGEV+I K DF  LN++    G   +ANPRNAA+G LR+L+P    +R L+  
Sbjct: 210 VPPVLEVRGEVFIRKEDFKKLNEKREEEGEALFANPRNAAAGSLRQLDPKITASRPLSVS 269

Query: 240 VHGLGKTSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           ++ +  T  + A       L+ ++ LG PVN+   +A    G+ + Y      R  L ++
Sbjct: 270 LYEIVPTEGVPAFDTHTAKLEYLQKLGLPVNHH-ERAQGLEGVRAAYQAALKGRHALKFE 328

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           +DG+V KVD    +++LG+ ++SPRW +++KF  ++ STR+  I++Q+GRTG LTPVA L
Sbjct: 329 VDGMVVKVDSEDQRRRLGQVSKSPRWAVAYKFPPEEESTRVEAIEVQVGRTGALTPVAHL 388

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV +GG  ++ ATLHNED ++            +D+R GD V V+RAG+VIP++V ++ 
Sbjct: 389 KPVKVGGVTVSRATLHNEDELRR-----------KDVRQGDTVFVRRAGDVIPEIVSVVP 437

Query: 419 NERHPD 424
           N+R  D
Sbjct: 438 NQRPAD 443


>gi|281424041|ref|ZP_06254954.1| putative DNA ligase [Prevotella oris F0302]
 gi|281401824|gb|EFB32655.1| putative DNA ligase [Prevotella oris F0302]
          Length = 665

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 170/713 (23%), Positives = 299/713 (41%), Gaps = 62/713 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E   +++  L   ++   D YY     ++ D E+DA+  +   +          + P+ 
Sbjct: 2   AEDKLRKMRELVDLLNRAADAYYNGQGELMTDYEWDAMFDQVKQLETE----TGQKFPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P N++  +      K  H  P LSL K     +L K+                   L  K
Sbjct: 58  PTNRVSEDNITG-QKEEHEFPALSLAKTKQPTELAKWAEGR------------PIWLSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  + + ++ GK      RG+GH G +++    AI  IP+ +       + VRGE  I
Sbjct: 105 LDGLTLVVTFDNGKLTKVVTRGNGHIGTNITHLANAIQGIPQEIKSK--GHVVVRGECVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
           S  DF   N E        YANPRN ASG L   +  ++  R+LN+    L    E    
Sbjct: 163 SYADFEQFNIESDEE----YANPRNLASGSLTLKDVNEVRQRHLNWIPFTLVYAEE-PIN 217

Query: 253 GQYEMLQKMRCLGFPVNNGVR----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                +  +   G       +           +++ + E  + +   PY +DGLV   D+
Sbjct: 218 SWGARMDWLEQNGMKAVEREKIEVPTLQNIEQVIAKWTEKVTGKVN-PYPVDGLVITYDD 276

Query: 309 FSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            S  +          R   + K+ ++ A T L  I+        ++PVA   PV + G  
Sbjct: 277 TSFAQTGSVTGHHATRAGYAFKWQDESADTVLDHIEWSCAA-NTISPVAVFTPVELEGTT 335

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+L N    + L   G+          G ++ V +A ++IPKV+ +     +     
Sbjct: 336 VKRASLCNISECERLGIGGQ----------GTKLSVIKANKIIPKVIRV-----NEKIGD 380

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C S+    +   T        CT G  C A+QL +   FVS++  NI+G+ 
Sbjct: 381 LKIPETCPVCGSKT--QITMSTASETKTLHCTNG-KCPAKQLRKFARFVSKEGVNIDGMS 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +Q +  F         ++  AD++ L+        ++  + GFG+ SV NL  +I K R+
Sbjct: 438 EQTVAKFIN----LGWVKEYADLYQLKNHAL----ELSFMEGFGEKSVRNLLHAIEKARD 489

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +    F+++L I   G ++ + L   Y  ++                      +  +G  
Sbjct: 490 VEAHHFLYALSIPLCGQDVCKRLLSAYPLHEIIDIASGKSDKTVPGVEAPFSLIAGIGPE 549

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKA 666
            +  IV+++ +  N   VE LL++V  S   +E +  +  +    V TG +   + R++ 
Sbjct: 550 KSNQIVKWFHDEENRMMVEKLLRQVHISQENNEASGEN-CKGLTFVVTGDVNHYKNRNEL 608

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
           + Y+   G  V+  +S+ T+ +I  D  +  SK +KAQQLG+ I++EE+F+ L
Sbjct: 609 KAYIESQGGKVTGSVSKSTNYLINNDVTSASSKNQKAQQLGIPIISEEEFINL 661


>gi|225013055|ref|ZP_03703470.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A]
 gi|225002783|gb|EEG40764.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A]
          Length = 487

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 167/520 (32%), Positives = 267/520 (51%), Gaps = 41/520 (7%)

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N++   +G   Y NPRN ASG L+  + + +  R L  F++ L     +    QY+ L 
Sbjct: 1   MNEQRAILGEPLYRNPRNTASGSLKLQDSSIVAERPLTCFLYSLA-GDNLPVTSQYDALI 59

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           K R  GF V    R  N+   +  +    +  R +LPY+IDG+V KV+   LQ++LG  A
Sbjct: 60  KAREWGFKVPESARLVNSIDAVFEFITYWEEQRKSLPYEIDGIVIKVNSLFLQEELGFTA 119

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++PRW I++K+  +QASTRL  +  Q+GRTG +TPVA+LEPV I G  +  A+LHN D I
Sbjct: 120 KAPRWAIAYKYKAEQASTRLNAVQYQVGRTGAITPVAQLEPVVISGTTVKRASLHNADQI 179

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           + L           D+R+GD V V++ GE+IPK+  I  + R        F   CP C S
Sbjct: 180 EKL-----------DMRIGDTVFVEKGGEIIPKITGIDNHNRGKHEDRVLFIENCPECNS 228

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            + R          A H C+  L+C  QQ+ +++HF+ R A +IEGLG + +   +K   
Sbjct: 229 PLRRVQGE------AQHYCSNELSCPPQQIGKIQHFIGRKAMDIEGLGGETVGLLYKE-- 280

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +R  AD++ L++ Q     ++       + SV NL + I K +     + +F LGI
Sbjct: 281 --GLLRSIADLYQLKKEQVLPIERMA------EKSVANLLEGIEKSKEKPFSKVLFGLGI 332

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           R+VG  +A+ LA+ + S    A      + +  +          +GD IAQ++++++ + 
Sbjct: 333 RYVGETVAKQLAREFKSIDRLALATLEELTNTEE----------IGDRIAQSVLDYFAST 382

Query: 620 RNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           +N   + AL            E N   +   KK V +G  +   R   +  +  +G  V+
Sbjct: 383 KNQSQISALKNFGLQMQALESEHNFHDDFVGKKFVVSGVFEAFSREVLKSEIENMGGKVA 442

Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
           + +S KTD +I G+  G SK EKA + GV I++E+ +L L
Sbjct: 443 SSVSAKTDYLISGEGVGPSKKEKADKFGVTILDEKSYLAL 482


>gi|288802753|ref|ZP_06408191.1| DNA ligase [Prevotella melaninogenica D18]
 gi|288334903|gb|EFC73340.1| DNA ligase [Prevotella melaninogenica D18]
          Length = 673

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 176/709 (24%), Positives = 299/709 (42%), Gaps = 69/709 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+ SL  +++   D YY     ++ D E+DA   +   +     +      P+ P   +
Sbjct: 3   KEIQSLVNQLNAASDAYYNGRDELMTDYEWDAAFDKLKKLE----EETGIILPDSPTQNV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +      +V H  P LSL K   +EDL K+                   L  K+DG  
Sbjct: 59  SADNVAGKKEV-HEFPALSLAKTKKVEDLAKWAENR------------PIWLSWKLDGLT 105

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y+ GK      RG+GH G +++    AI  I  + ++     + +RGE  IS  DF
Sbjct: 106 LVVTYDNGKLTKVVTRGNGHIGTNITHLSTAIDGI--LQTIPYKGHLVIRGEAVISYPDF 163

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
              N E        YANPRN ASG L   +  ++  R+L +    L    E         
Sbjct: 164 EQFNMEAEEE----YANPRNLASGSLTLKDINEVKARHLRWIPFTLVYAEE-EINSWGGR 218

Query: 258 LQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSI-----RSTLPYDIDGLVYKVDEFSL 311
           ++ +   GF  V+  + +  T   I +  +           S  PY +DGLV   D+   
Sbjct: 219 MEWLEHQGFRVVDRELIEQPTIANIKAVIHHWTERVTGASTSPFPYPVDGLVITYDDTVY 278

Query: 312 QKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
                       R   + K+ ++ A T L  I+        ++PVA   PV++ G  +  
Sbjct: 279 AATGSVTGHHATRAGYAFKWQDESAETELNYIEWSCAA-STISPVAVFRPVDLEGTTVKR 337

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+L N    + L    K          G ++ V +A ++IPKV+++I +        F  
Sbjct: 338 ASLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVIES-----VGTFHI 382

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S      +  +G       CT    C A+QL++   FVS++  NI+GL +Q 
Sbjct: 383 PETCPVCHSATEVSESEVSGTRT--LHCTNT-HCPAKQLKKFGRFVSKEGVNIDGLSEQT 439

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F         +R  AD+F L        T++  + GFG+ SVT L  +I K RN+  
Sbjct: 440 VQKFIN----LGWVREYADLFHLTEH----ATELRTMEGFGNKSVTKLLAAIEKARNVEA 491

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F+L I  VG ++   L   Y       + I        +D  S   +  +G   + 
Sbjct: 492 RRLLFALNIPLVGQDVCNRLLSAYP----LEELIKTATGSAAEDVFST--IAGIGPEKSA 545

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEY 669
           + V + ++  N   ++ LL E++ S         +  +    V TG +   + R++ + Y
Sbjct: 546 SFVRWIKDTDNQSMLQHLLVELNVS-QLSSAPTGNSCQGLTFVVTGDVHHYKNRNELKAY 604

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGS--KLEKAQQLGVKIMNEEQFLF 716
           +   G  V+  +S+ T+ +I  D   S  K +KA++L + I++E++F+ 
Sbjct: 605 IESQGGKVTGSVSKSTNYLINNDVESSSGKNQKAKELSIPIISEDEFIA 653


>gi|168334213|ref|ZP_02692416.1| DNA ligase, NAD-dependent [Epulopiscium sp. 'N.t. morphotype B']
          Length = 639

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 188/705 (26%), Positives = 325/705 (46%), Gaps = 75/705 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
             +  L   +   +  Y Q    I+ + EYD L    + +      +      N    KI
Sbjct: 5   ARMKELVTLLDKANFAYEQEDTEIMSNLEYDKLVVELEELEKELGIIYG----NSVTQKI 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G  ++  L   +H    LSL+K   I+ L+ F+             +    L  K+DG  
Sbjct: 61  GHTVSNELVTKSHDTSILSLDKTKKIDILQNFL------------GNEEGLLSYKLDGLT 108

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + I+Y+ G  + A  RGDG  GEDV+A  +    +P  L +   + + +RGE  I+ ++F
Sbjct: 109 VVIKYDNGNLIEAVTRGDGQVGEDVTANAKTFRNLP--LKIKYKDKLTIRGEAIITNSNF 166

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N     V    Y NPRN  SG +R+L+ +    R ++F    + K  + F   + EM
Sbjct: 167 ARIN----MVEDNKYKNPRNLCSGSVRQLDSSVTAKRNIDFICFAVMKCDKNFV-TKKEM 221

Query: 258 LQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           L+ ++  GF V    V    T   +V  +    +      +  DGLV   ++ +  K LG
Sbjct: 222 LKFLKQQGFAVVEAEVVTDKTLKTVVEKFTANIT---NKDFQADGLVLSFNDIAYSKSLG 278

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++ P+  +++K+ + Q  T L  I+    RTG + PVA    V++ G  +T+A++HN 
Sbjct: 279 VTSKFPKDSMAYKWKDIQKETILEAIEWNTSRTGKINPVAVFAAVDLEGTTVTHASIHNI 338

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             ++ L            + +GDR++V +A  +IP++++ +         P + P+ C  
Sbjct: 339 SMVEEL-----------KLGLGDRIIVYKANMIIPQILENLSQ-----TGPVAIPNVCSK 382

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C    +     K  K      C G   C  +QL++L HFVSR+A +I+GL +  L+    
Sbjct: 383 CGGNTII----KQEKETKTLYC-GNPNCLEKQLKQLVHFVSRNAMDIKGLSEAILEKL-- 435

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   ++I+++++ +     +I ++ GFG+ S T L  SI+K R ++L RF+ +
Sbjct: 436 ------PINDVSEIYSIEKYK----DEIISMRGFGEKSYTKLVKSIDKSRKVALHRFVTA 485

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  VG E A+ + KY+          +N+ A        L  +  +G +IA+ I  ++
Sbjct: 486 LGIPQVGVENAKLICKYFX---------DNLDAIRAASEEELHDIEGIGSLIAKEIYRYF 536

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGA 675
            N  N   ++ LL E+     + E N SS ++ K    TG L     R   Q+ + Q G 
Sbjct: 537 NNEENKQLIDKLLMEI--KFEQKETNSSSSLDGKIFAITGKLNYFENRQALQKKIEQCGG 594

Query: 676 VVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
            VS  +S KT  +I  +  +   K  KA +L + I++EE F+ +L
Sbjct: 595 KVSESISSKTSYLINNEINSTSKKNSKAHELSIPIISEEDFVKML 639


>gi|299142918|ref|ZP_07036045.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella
           oris C735]
 gi|298575647|gb|EFI47526.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella
           oris C735]
          Length = 657

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 169/706 (23%), Positives = 294/706 (41%), Gaps = 62/706 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L   ++   D YY     ++ D E+DA+  +   +          + P+ P N++  
Sbjct: 1   MRELIDLLNRAADAYYNGQGELMTDYEWDAMFDQVKQLETE----TGQKFPDSPTNRVSE 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +      K  H  P LSL K     +L K+                   L  K+DG  + 
Sbjct: 57  DNITG-QKEEHEFPALSLAKTKQPTELAKWAEGR------------PIWLSWKLDGLTLV 103

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + ++ GK      RG+GH G +++    AI  IP+ +       + VRGE  IS  DF  
Sbjct: 104 VTFDNGKLTKVVTRGNGHIGTNITHLANAIQGIPQEIKSK--GHVVVRGECVISYADFEQ 161

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
            N E        YANPRN ASG L   +  ++  R+LN+    L    E         + 
Sbjct: 162 FNIESDEE----YANPRNLASGSLTLKDVNEVRQRHLNWIPFTLVYAEE-PINSWGARMD 216

Query: 260 KMRCLGFPVNNGVR----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            +   G       +           +++ + E  + +   PY +DGLV   D+ +  +  
Sbjct: 217 WLEQNGMKAVEREKIEVPTLQNIEQVIAKWTEKVTGKVN-PYPVDGLVITYDDTTFAQTG 275

Query: 316 GERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
                   R   + K+ ++ A T L  I+        ++PVA   PV + G  +  A+L 
Sbjct: 276 SVTGHHATRAGYAFKWQDESADTVLDHIEWSCAA-NTISPVAVFTPVELEGTTVKRASLC 334

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N    + L   G+          G ++ V +A ++IPKV+ +     +        P  C
Sbjct: 335 NISECERLGIGGQ----------GTKLSVIKANKIIPKVIRV-----NEKIGDLKIPEAC 379

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S+    +   T        CT G  C A+QL +   FVS++  NI+G+ +Q +  F
Sbjct: 380 PVCGSKT--QITMSTASETKTLHCTNG-KCPAKQLRKFARFVSKEGVNIDGMSEQTVAKF 436

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    ++  AD++ L+        ++  + GFG  SV NL  +I K R++    F+
Sbjct: 437 IN----LGWVKEYADLYQLKNHAL----ELSFMEGFGKKSVRNLLHAIEKARDVEAHHFL 488

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++L I   G ++ + L   Y  Y+                      +  +G   +  IV+
Sbjct: 489 YALSIPLCGQDVCKRLLSAYPLYEIIDIASGKSDKTVPGVEAPFSLIAGIGPEKSNQIVK 548

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQL 673
           ++ +  N   VE LL++V  S    E +  +  +    V TG +   + R++ + Y+   
Sbjct: 549 WFHDEENRMMVEKLLRQVHISQENKEASGEN-CKGLTFVVTGDVNHYKNRNELKAYIESQ 607

Query: 674 GAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
           G  V+  +S+ T+ +I  D  +  SK +KAQQLG+ I++EE+F+ L
Sbjct: 608 GGKVTGSVSKSTNYLINNDVTSASSKNQKAQQLGIPIISEEEFINL 653


>gi|302345294|ref|YP_003813647.1| DNA ligase (NAD+) [Prevotella melaninogenica ATCC 25845]
 gi|302149440|gb|ADK95702.1| DNA ligase (NAD+) [Prevotella melaninogenica ATCC 25845]
          Length = 673

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 175/713 (24%), Positives = 301/713 (42%), Gaps = 69/713 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+ SL  +++   D YY     ++ D E+DA   +   +     +      P+ P   +
Sbjct: 3   KEIQSLVNQLNAASDAYYNGRDELMTDYEWDAAFDKLKKLE----EETGIILPDSPTQNV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +      K  H  P LSL K   +EDL K+              +    L  K+DG  
Sbjct: 59  SADNVAG-KKEEHEFPALSLAKTKKVEDLAKWAE------------NKPIWLSWKLDGLT 105

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y+ GK      RG+GH G +++    AI  I  + ++     + +RGE  IS  DF
Sbjct: 106 LVVTYDNGKLTKVVTRGNGHIGTNITHLSTAIDGI--LQTIPYKGHLVIRGEAVISYPDF 163

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
              N E        YANPRN ASG L   +  ++  R+L +    L  T E         
Sbjct: 164 EQFNMEAEEE----YANPRNLASGSLTLKDINEVKARHLRWIPFTLVYTEE-EINSWGGR 218

Query: 258 LQKMRCLGFPVNN----GVRQANTFHGIVSYYNEMKS--IRSTLPYDIDGLVYKVDEFSL 311
           ++ +   GF V +         N    ++ ++ E  +    S  PY +DGLV   ++   
Sbjct: 219 MEWLEHQGFRVVDRELIEQPTVNNIEAVIHHWTERVTGVSSSPFPYPVDGLVISYEDTVY 278

Query: 312 QKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
                       R   + K+ ++ A T L  I+        ++PVA   P+ + G  +  
Sbjct: 279 AATGSVTGHHATRAGYAFKWQDESAETELDYIEWSCAA-STISPVAVFRPIELEGTTVKR 337

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+L N    + L    K          G ++ V +A ++IPKV+++I +        F  
Sbjct: 338 ASLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVIES-----VGTFHI 382

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S      +  +G       CT    C A+QL++   FVS++  NI+GL +Q 
Sbjct: 383 PETCPVCHSATEVSESEVSGTRT--LHCTNT-HCPAKQLKKFGRFVSKEGVNIDGLSEQT 439

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F         +R  AD+F L        T++  + GFG+ SVT L  +I K RN+  
Sbjct: 440 VQKFIN----LGWVREYADLFHLTEH----ATELRTMEGFGNKSVTKLLAAIEKARNVEA 491

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F+L I  VG ++   L   Y       + I   I    +D  S   +  +G   + 
Sbjct: 492 RRLLFALNIPLVGQDVCNRLLSAYP----LEELIKTAIESAAEDVFST--IAGIGPEKSA 545

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEY 669
           + V + ++  N   ++ LL E++ S            +    V TG +   + R++ + Y
Sbjct: 546 SFVRWMKDTDNQSMLQHLLAELNVS-QPSSAPTGDSCQGLTFVVTGDVHHYKNRNELKAY 604

Query: 670 VTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G  V+  +S+ T+ +I    ++   K +KA++L + I++E++F+    Q
Sbjct: 605 IESQGGKVTGSVSKSTNYLINNDVESTSGKNQKAKELSIPIISEDEFIARFAQ 657


>gi|295698750|ref|YP_003603405.1| DNA ligase, NAD-dependent [Candidatus Riesia pediculicola USDA]
 gi|291157368|gb|ADD79813.1| DNA ligase, NAD-dependent [Candidatus Riesia pediculicola USDA]
          Length = 593

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 189/621 (30%), Positives = 316/621 (50%), Gaps = 47/621 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +   + LSSL ++I  H   Y+   K  I D EYD + R+ D I     + ++ E+ 
Sbjct: 1   MKKKNIHQYLSSLRKKIKKHQYLYHILGKSEIPDFEYDLMIRKLDRIEKEISEKSKKEEE 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                 I  ++     K+ H  P LSL  ++N  +  KF   I +    +++  I+F  E
Sbjct: 61  T-----ILSDLRRRSKKIKHYSPMLSLNNVFNQHEYLKFYKNILKIINNQEER-IYFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVR 188
            KIDG  + + Y+ G+F  A+ RG+G +GED+S+ I+ I  IP  +      +PE+IE+R
Sbjct: 115 LKIDGLAVNLVYKNGEFHSASTRGNGETGEDISSKIQYIRDIPLSIRNRKGYVPELIEIR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLG--- 244
           GE+++    F   N  +    +K ++NPR+AA G++++++  +I R  LNFF +G G   
Sbjct: 175 GEIFMKFKKFQEFNSMLKKEKKKTFSNPRSAAIGLVKKVSQKEIIRESLNFFSYGCGLIK 234

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              +    K Q+E L+ ++    P+    +  +    I+ YY  + ++R  L Y IDG+V
Sbjct: 235 LNNTFESPKNQFECLKMLKTWNVPIVENTKMYSCSKKILEYYKNIYNMRDQLDYGIDGIV 294

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+ F  QK +G  + +P+W ++ KF  K+  T LLD+  Q+GRTG++TP+A+++ ++ 
Sbjct: 295 IKVNSFIYQKIIGHTSYAPKWSVAFKFPAKKKITTLLDVIFQVGRTGVITPIAKIDTISF 354

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  I   +LHN ++IK L            I +GD+V+V  AG++IPK+   I +    
Sbjct: 355 NGIQINRVSLHNTNFIKDL-----------GIMIGDKVIVSIAGDIIPKITGKIFDSTSN 403

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
                 FP +CP C S    +   K        RCTGGL+C +Q+   + HFVS+ A NI
Sbjct: 404 HINEIVFPKYCPSCFSITQIEKKGK-------IRCTGGLSCLSQRESLINHFVSKKAINI 456

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G+GK  +    +       I  P+D+++L+     S        G    +   + +SI 
Sbjct: 457 IGIGKMTVKKMVQKN----LISDPSDLYSLKFNDLLSL------NGITQATSKKILNSIE 506

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +NI+LERF++SLGI  VG  +++ +A    SYQ F +     I+         I    
Sbjct: 507 KSKNITLERFLYSLGIPGVGYVLSKKIASNSESYQFFLR-----ISSGEKYLPCKIPFKG 561

Query: 604 VGDIIAQAIVEFYQNPRNICA 624
           +G  I + I+ F++   N   
Sbjct: 562 IGKNITENIISFFKKDHNRRM 582


>gi|254673676|emb|CBA09270.1| DNA ligase [Neisseria meningitidis alpha275]
          Length = 423

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 157/414 (37%), Positives = 234/414 (56%), Gaps = 30/414 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186
           + +EPK DG  I++ Y  G  + AA RGDG +GEDV+  I+ +  IP  L   N PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               F A+   + L   + LGF + N           ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVI 422


>gi|254229732|ref|ZP_04923141.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25]
 gi|151937777|gb|EDN56626.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25]
          Length = 407

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 167/444 (37%), Positives = 259/444 (58%), Gaps = 39/444 (8%)

Query: 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337
              + +YY ++   R  LPY+IDG+V K+D+ ++Q++LG  AR+PRW I++KF  ++  T
Sbjct: 1   MADVKAYYQDILQRRDALPYEIDGVVIKIDDIAVQERLGFVARAPRWAIAYKFPAQEEMT 60

Query: 338 RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397
            L +++ Q+GRTG +TPVA+LEPV +GG  ++NATLHN D I+ L            +++
Sbjct: 61  TLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERLQ-----------VKI 109

Query: 398 GDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457
           GD V+++RAG+VIP+VV +I   R   A+   FP+ CP+C S V R          A  R
Sbjct: 110 GDHVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIEGE------AVTR 163

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517
           CTGGL C AQ+ + LKHFVSR A +++GLG + ++     E     ++ PAD+F L    
Sbjct: 164 CTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREM----VKTPADLFKLSAGI 219

Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
            T   ++      G  S  N+ +++ K +  +L RF++SLGIR VG   A +LA ++ + 
Sbjct: 220 LTVLDRM------GPKSAQNIVNALEKSKETTLPRFLYSLGIREVGEATAANLAMHFKTL 273

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPS 635
           +          A  N +   LI V  +G ++AQ I  F+   +N   V+ LL++    P 
Sbjct: 274 E----------AIQNANEEQLIEVQDIGAVVAQHITTFFSEEQNQAVVKDLLEQGIHWPE 323

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
           I   E+     +E K +V TGTL ++ R +A+E +  LGA V+  +S+KTDI+  G+N G
Sbjct: 324 INTTEQVGELPLEGKTVVLTGTLSQLGRTEAKEALQSLGAKVTGSVSKKTDILFAGENAG 383

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKL KAQ+LG++I  E+  L L+ 
Sbjct: 384 SKLAKAQELGIEIKTEQDLLELMN 407


>gi|327313400|ref|YP_004328837.1| NAD-dependent DNA ligase domain-containing protein [Prevotella
           denticola F0289]
 gi|326944680|gb|AEA20565.1| NAD-dependent DNA ligase domain protein [Prevotella denticola
           F0289]
          Length = 684

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 181/726 (24%), Positives = 302/726 (41%), Gaps = 78/726 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+ SL ++++   D YY   + ++ D E+DA   R   +            P+ P   +
Sbjct: 3   KEIQSLVKQLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQ----TGIVLPDSPTQNV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +      K  H  P LSL K   +EDL ++                   L  K+DG  
Sbjct: 59  SADNVAG-KKEKHEFPALSLAKTKKVEDLARWAE------------GKPIWLSWKLDGLT 105

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +   Y+ G+      RGDGH G +++   RAI  I  + ++     + +RGE  IS  DF
Sbjct: 106 LVATYDNGRLTKVVTRGDGHIGTNITHLSRAIEGI--LQTVPYRGHLVIRGEAVISYPDF 163

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
              N E        YANPRN ASG L   +  ++  R+L++    L  T E       E 
Sbjct: 164 EKFNMESEEE----YANPRNLASGSLTLKDINEVKQRHLHWIPFTLVYTEE-EIDSWGER 218

Query: 258 LQKMRCLG-FPVNNGVRQANTFHGIVSYYNEMKSI--------RST------LPYDIDGL 302
           +  +   G  PV+  +    T   I +  +   S         R         PY +DGL
Sbjct: 219 MAWLERQGFHPVDRELISRPTAGNIQAVIDSWSSRVTGQALNTRHPEADTQRFPYPVDGL 278

Query: 303 VYKVDEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           V   D+ +             R   + K+ +++A T L  I+        ++PVA  +PV
Sbjct: 279 VITYDDTAYAATGSVTGHHATRAGYAFKWQDERAETELDYIEWSCAA-STISPVAVFQPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  A+L N    + L   GK          G ++ V +A ++IPKVV ++    
Sbjct: 338 ELEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKIIPKVVSVVER-- 385

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                 F  P  CP+C+S      +  +G       CT    C A+QL++   FVS++  
Sbjct: 386 ---MGIFHVPETCPVCRSATEVVESEASGTRT--LHCTNT-HCPAKQLKKFGRFVSKEGV 439

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+GL +Q +  F         I   AD F L         ++  + GFGD SV+ L  +
Sbjct: 440 NIDGLSEQTVQKFIN----LGWICEYADFFHLNEHAL----QLRTMDGFGDRSVSKLLAA 491

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + K R++   R +F+L I  VG ++   L   Y   +       +     +DD  S   +
Sbjct: 492 VEKARSVEARRLLFALNIPLVGQDVCNRLLSAYPLKELIRTATES----TDDDVFST--I 545

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           P +G   + + V + ++  N   ++ LL E++           S  +    V TG +   
Sbjct: 546 PGIGPEKSASFVRWMKDADNQPVLQHLLAELNVRQA-SSAPTGSSCQGLTFVITGDVHHY 604

Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R++ + Y+   G  V+  +S+ TD +I  D  +   K +KA+ L + I++EE F+   
Sbjct: 605 KNRNELKAYIESQGGKVTGSVSKSTDFLINNDVKSTSGKNQKAKALSIPIISEEDFIDHF 664

Query: 719 QQYNTT 724
            Q + +
Sbjct: 665 AQGSAS 670


>gi|261880335|ref|ZP_06006762.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333026|gb|EFA43812.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 665

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 176/711 (24%), Positives = 307/711 (43%), Gaps = 69/711 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L ++++   D YY     ++ D E+DAL  +   I            P+ P N++
Sbjct: 5   QRMQELVEQLNRASDAYYNGRDELMSDYEWDALFDKLKLIEQE----TGKTLPDSPTNRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +      K  H   TLSL K   ++DL K+ T                 L  K+DG  
Sbjct: 61  SEDNITG-QKEEHEFATLSLAKTKLVDDLVKWATGR------------PIWLSWKLDGLT 107

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y+ GK      RG+GH G +++   +AI  IP+ +       + +RGE  IS  DF
Sbjct: 108 LVVTYDNGKLTKVVTRGNGHIGTNITHLAKAIAGIPQKIKNK--GHVVIRGEAIISYEDF 165

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
              N E  A     YANPRN ASG L   +P +++ R + +    L  + E         
Sbjct: 166 EQFNMENDAE----YANPRNLASGSLTLKDPNEVSQRNIRWIPFTLVHSDE-DISSWGSR 220

Query: 258 LQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMK---SIRSTLPYDIDGLVYKVDEFSLQK 313
           +  +R  G   V++   +  T   I    ++     + R   PY +DGLV   D+ +   
Sbjct: 221 MDFLRENGMQCVDHECIEQPTLENIQKAIDQWTLRVTNREN-PYPVDGLVIVYDDTAYAS 279

Query: 314 QLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                     R   + K+ ++ A T L +I+        ++PVA   PV + G  +  A+
Sbjct: 280 TGSVTGHHATRAGYAFKWQDESADTELEEIEWSCAA-STISPVAVFRPVELEGTTVKRAS 338

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L N    + L   GK          G ++ V +A ++IPKV+ +     +        P 
Sbjct: 339 LCNISECERLGIGGK----------GTKLAVIKANKIIPKVIKV-----YEKVGELETPH 383

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C+S     ++P +G       CT    C A++L++ + F+S+D  +++G+ +Q + 
Sbjct: 384 ECPVCKSPTEIIVSPSSGTRT--LHCTNE-TCPAKELKKFRRFLSKDGMDVDGISEQTIS 440

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         +   ADI+ L         +I  + GFG+ S  N+  SI K R +   R
Sbjct: 441 KFIN----LGWVAEYADIYHLPAH----AGQIARLEGFGEKSAANMVSSIEKSRKVEARR 492

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN-----NIIAHNNDDWLSLIRVPLVGDI 607
           F+++L I  VG +    L   Y                ++      D L++  +P +G  
Sbjct: 493 FLYALSIPLVGKDACNRLLSTYALTDLINMVTGRGKSTDLFTPAPGDLLAM--IPGIGPE 550

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKA 666
            + ++V ++ + RN   V+ LL+EV       E     + E+   V TG +   + R++ 
Sbjct: 551 TSASLVNWFSDVRNQTIVDRLLQEVVIEQVSIE-PTGKKCESLTFVVTGDVHHYKNRNEL 609

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
           + Y+   G  V+  +S+ T  +I  D  +   K +KAQQL + I++E++F+
Sbjct: 610 KAYIESQGGKVTGSVSKSTSFLINNDVTSTSGKNQKAQQLHIPIISEDEFI 660


>gi|255023537|ref|ZP_05295523.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-208]
          Length = 419

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 170/459 (37%), Positives = 250/459 (54%), Gaps = 41/459 (8%)

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
            A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F  LN+     G+
Sbjct: 1   GATRGDGTIGEDITANLRTIRSIPMKLQKDY--SIEVRGEAFMPKRSFQKLNEIREEEGQ 58

Query: 211 KPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
             +ANPRNAA+G LR+L+      R L+ F++ +    E+  +     L  +  LG  VN
Sbjct: 59  MLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLETLGLKVN 118

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
              R  N+   + +Y +E    R+ L YDIDG+V K++    Q+Q+G   +SPRW I++K
Sbjct: 119 KERRLCNSLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGTTVKSPRWSIAYK 178

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           F  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNED I          
Sbjct: 179 FPAEEVPTKLLDIELNVGRTGVVTPTAVLEPVRVAGTTVSRASLHNEDLIT--------- 229

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
              +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP C S +VR      
Sbjct: 230 --EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEKPFHMPKNCPTCDSELVRLEEE-- 285

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
                A RC     C AQ  E L HFVSR+A NI+GLG++ +   F        I+  AD
Sbjct: 286 ----VALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQH----LIKDVAD 336

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
           +F L + +     ++      G+ SVTNL  SI   +  SLE+ +F LGIRHVGA+ A+S
Sbjct: 337 LFFLSKEKLLELERM------GEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKS 390

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           LA ++ +  N              D  +L  +  +G+ +
Sbjct: 391 LAIHFDTMDNLKVA----------DKETLTSINDIGEKM 419


>gi|260591596|ref|ZP_05857054.1| putative DNA ligase [Prevotella veroralis F0319]
 gi|260536396|gb|EEX19013.1| putative DNA ligase [Prevotella veroralis F0319]
          Length = 676

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 174/708 (24%), Positives = 298/708 (42%), Gaps = 69/708 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ SL ++++   D YY   + I+ + E+DA   R   +     +      P+ P   + 
Sbjct: 4   EIQSLVEQLNAASDAYYNGREEIMTNYEWDAAFDRLKKLE----EETGIILPDSPTQNVS 59

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      K  H  P LSL K   + +L K+                   L  K+DG  +
Sbjct: 60  ADNLTG-QKEEHEFPALSLAKTKKVAELAKWAENR------------PIWLSWKLDGLTL 106

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y+ GK      RG+GH G +++   +AI  I  + ++     + +RGE  IS  DF 
Sbjct: 107 VVTYDNGKLTKVVTRGNGHIGTNITHLSKAIDGI--LQAIPYKGHLVIRGEAVISYPDFE 164

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258
             N E        YANPRN ASG L   N  ++  R++ +    L    E         +
Sbjct: 165 QFNMESEEE----YANPRNLASGSLTLKNINEVKERHIRWIPFTLVYEEEEII-SWGNRM 219

Query: 259 QKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSI-----RSTLPYDIDGLVYKVDEFSLQ 312
             +   GF PV+  + +  T   I +  +           S  PY +DGLV   D+ +  
Sbjct: 220 AWLEQQGFKPVDRELIEQPTEANIQAVIDCWTERVTGKSSSPFPYPVDGLVITYDDTAYA 279

Query: 313 KQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
                      R   + K+ ++ A T L  I+        ++PVA  +PV + G  +  A
Sbjct: 280 ATGSVTGHHATRAGYAFKWQDESAETELEYIEWSCAA-STISPVAVFKPVELEGTTVKRA 338

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +L N    + L    K          G ++ V +A ++IPKV++++          F  P
Sbjct: 339 SLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVVERL-----GVFHIP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+CQS      +  +G       CT    C A+QL++   FVS++  NI+GL +Q +
Sbjct: 384 EVCPVCQSATEVTESESSG--TKTLHCTNT-HCPAKQLKKFGRFVSKEGINIDGLSEQTI 440

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             F         +R  AD+F L        +++  + GFGD SV+ L  +I K RN+   
Sbjct: 441 QKFIN----LGWVREYADLFHLNNH----ASELRTMDGFGDKSVSKLLTAIEKARNVEAH 492

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F+L I  +G ++   L   Y     F            +D  +   +  +G   + +
Sbjct: 493 RLLFALNIPLIGRDVCNRLLSAYQIADLFHTATE----ATTEDVFAT--IAGIGPEKSAS 546

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
            V + ++  N   ++ LL E++ S         +  E    V TG +   + R++ + Y+
Sbjct: 547 FVRWMKDKDNYSMMQQLLVELNISQS-SSAPTGNSCEGLTFVITGDVHHYKNRNELKAYI 605

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGS--KLEKAQQLGVKIMNEEQFLF 716
              G  V+  +S+ T  +I  D   S  K +KA++L + I++EE+F+ 
Sbjct: 606 ENQGGKVTGSVSKSTSFLINNDIESSSGKNKKAKELSIPIISEEEFIA 653


>gi|298486340|ref|ZP_07004403.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159347|gb|EFI00405.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 628

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 191/650 (29%), Positives = 303/650 (46%), Gaps = 117/650 (18%)

Query: 170 IPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN 228
           +  IP  L     P+++EVRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+
Sbjct: 1   MRNIPLKLKGKGWPDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLD 60

Query: 229 PTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287
                 R L F  +GLG+TS   A     +L+ ++  G PV+  ++ AN     + YY +
Sbjct: 61  SKITANRPLEFCCYGLGQTSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRD 120

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
           +   R TL Y+IDG+V+KV+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+G
Sbjct: 121 IGERRLTLSYEIDGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVG 180

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG +TPVARL+PV + G ++ NATLHN D +  L            + +GD V+++RAG
Sbjct: 181 RTGAVTPVARLKPVKVAGVMVANATLHNMDEVARLG-----------LMIGDTVIIRRAG 229

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGG 461
           +VIP+VV ++   R  +A+    P  CP+C S V R          +T    A +RC G 
Sbjct: 230 DVIPQVVQVVAERRPENARAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGR 289

Query: 462 LACSAQQLERLKHFVSRDAFN----------------------------------IEGLG 487
           LAC AQ  + + H+VSR A +                                  +EG  
Sbjct: 290 LACGAQLKQAIIHYVSRRAMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFA 349

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTL------------QRRQQTSTTKIENILG------ 529
           +   +   K+   +    +   I+ L              R   S  +++  L       
Sbjct: 350 EISSNKLLKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYL 409

Query: 530 --------------FGDVSVTNLYDSI----------------NKRRNISLERFIFSLGI 559
                         F D    N+ D++                    + +LE  I  L I
Sbjct: 410 PDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLKLQDQGELGAEFAASTTLEGLIDKLHI 469

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
             VG   A+ LA  + + +          A  + DWL + +   + +  A+++ +F+   
Sbjct: 470 PSVGPGAAQKLADRFGTLE----------AIISADWLDMRQT--LPEKQAKSVRDFFDES 517

Query: 620 RNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            +     A+EA LK+        +K V    +  +  V TG+L+++ R  A+E +  LGA
Sbjct: 518 AHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLETLGA 577

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L +    +
Sbjct: 578 KVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLTELGVAV 627


>gi|269219963|ref|ZP_06163817.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210599|gb|EEZ76939.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 799

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 151/491 (30%), Positives = 248/491 (50%), Gaps = 34/491 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            AR+  + +   +S     Y+   +PI+ D  YD L R    +    P+LA     + P 
Sbjct: 13  DARERWNEIAPLVSSAQRAYHSGDEPIVTDEHYDRLVRELRRLEAEHPELAVD---SSPA 69

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G         V H     SL+ ++ ++DL+++              +   T E KID
Sbjct: 70  QSVGAPAAAGFENVAHLERLYSLQDVFTLDDLKEWYEGTA--------GAARCTAEVKID 121

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + +RY  G+ V  A RGDG +GEDV+A +R I ++P+ L  + P+++E+RGEV+I  
Sbjct: 122 GLAVNLRYVGGELVVGATRGDGVTGEDVTANVRTISSVPQSLRGDFPDVVEIRGEVFIPL 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK-- 252
             F + N    A G K +ANPRNAA+G LR+ +P     R L+F  HG G+     +   
Sbjct: 182 AKFDSFNARQRAAGLKEFANPRNAAAGSLRQKDPKVAAERPLDFIAHGAGRIDGTSSAVD 241

Query: 253 ----GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q  + +  +  G PV+  VR  +++  +  +  E   +RS L + IDG V+K+D 
Sbjct: 242 EKLASQKGLYELFQEWGVPVSPYVRLVSSWDDVEGFVREYADLRSDLIHGIDGAVFKIDS 301

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  +R PRW +++K+  ++  TRLLDI +Q+GRTG +TP A ++PV + G+ +
Sbjct: 302 RAEQEDLGATSRVPRWAVAYKYPPEEVETRLLDIKVQVGRTGRVTPFAVMKPVTVAGSTV 361

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN   +             + + +GD V+V++AG+VIP+V+  +   R    + +
Sbjct: 362 AQATLHNPSEVAR-----------KGVLIGDVVVVRKAGDVIPEVLGPVSALRDGSEREW 410

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + PS CP C + +               RC    +C AQ  ER+ +  SR A ++E LG+
Sbjct: 411 TMPSACPSCGTEL-----APAKDGDVDIRCPNARSCPAQLAERVAYIGSRAALDVEALGE 465

Query: 489 QQLDFFFKSED 499
           +   +    E 
Sbjct: 466 ETSLWLTDPER 476



 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 93/234 (39%), Gaps = 12/234 (5%)

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   K E      R+ A     + R+                 +  +   +   R   L 
Sbjct: 569 EVRVKGEPTGDFRRVRAAWTKPKWRRPQGKPAELASPSKPGKMIELVVAELQAARTKELW 628

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I +L IRHVG   A+++A  + S            A        + ++  VG +IAQ+
Sbjct: 629 RKIVALSIRHVGPTAAKAIASSFGSLS----------AAREASVEEMAQIDGVGRVIAQS 678

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++++  P +   VEA               + +   ++   +V TG L    R   +E 
Sbjct: 679 FLDWFDVPWHTEIVEAWEAAGVVFADEAAERQELPQTLKGMTVVATGALAGYTRDSVKEA 738

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +   G   +  +S+KT  ++VG NPGSK  KA+ LGV  ++E QF  LL+    
Sbjct: 739 IEARGGKAAGSVSKKTAAVVVGANPGSKAAKAEALGVPTLDEGQFEELLRTGEI 792


>gi|282858246|ref|ZP_06267432.1| NAD-dependent DNA ligase domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588955|gb|EFB94074.1| NAD-dependent DNA ligase domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 678

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 172/724 (23%), Positives = 298/724 (41%), Gaps = 74/724 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   K + +L  +++   D YY      + D E+DA   R  A+     ++     PN P
Sbjct: 3   EDKHKIMEALVLQLNEASDAYYNGKGEAMTDFEWDAAFDRLKALEEELGEVL----PNSP 58

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            N +  +      K  H  P LSL K  +  +L K+                   L  K+
Sbjct: 59  TNSVSADKLKG-QKEEHEYPALSLAKTKSETELAKWAE------------ERPIWLSWKL 105

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + + Y+ GK      RG+GH G +++    AI  I   +  N    I +RGE  IS
Sbjct: 106 DGLTLVVTYDNGKLTKVVTRGNGHIGTNITHLAAAIDNILPTVKAN--GHIVIRGEAVIS 163

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
             DF   N E        YANPRN ASG L   +  ++  R+L +    L  T E     
Sbjct: 164 YADFEQFNLESEEE----YANPRNLASGSLTLKDINEVKARHLRWIPFSLVHTDEEII-S 218

Query: 254 QYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEM------KSIRSTLPYDIDGLVYKV 306
             + +  +  LGF  V   +    T   I              + +   PY +DGLV   
Sbjct: 219 WGDRMAFLDKLGFNTVERELITLPTAENIEKVIATWTLRVTDTTRKDKQPYPVDGLVITY 278

Query: 307 DEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           D+               R   + K+ ++   T L  I+     T  ++PVA  +PV + G
Sbjct: 279 DDTEYAATGSVTGHHATRAGFAFKWQDESVETTLEYIEWSCA-TSTISPVAVFKPVELEG 337

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  A+L N    + L               G +++V +A ++IPKV+ +         
Sbjct: 338 TTVKRASLCNISECERLGIGDA----------GTKLMVIKANKIIPKVISV-----TECL 382

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F+ P+ CP+C        +  +G       CT    C A+QL++   FVS++  NI+G
Sbjct: 383 GSFTIPTTCPVCHQPTQIVESEASGTRT--LHCTNH-HCPAKQLKKFARFVSKEGINIDG 439

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           L +Q +  F         +   AD+F LQ + +     ++ + GFG+ S  NL  +I K 
Sbjct: 440 LSEQTVQKFIN----LGWVSEYADLFHLQEKAEA----LKYMEGFGEKSCDNLLTAIEKS 491

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN----------NDDW 595
           R +  ++ +F+L I  VG ++   L   Y   +   +   N+++             ++ 
Sbjct: 492 RKVEAKQLLFALSIPLVGKDVCTRLLSAYPLEELINKSRENMVSPTLQRSLFEEPRPNNE 551

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
                +  +G   + + V + Q+  N   ++ LL+E++ S    E    +  +    V T
Sbjct: 552 EIFSTIDGIGPEKSASFVGWMQDDSNYAQLQRLLQELTVSQTSSEPK-GNLCQGLTFVIT 610

Query: 656 GTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEE 712
           G +   + R++ + Y+   G  V+  +S+ T  +I  D  +   K +KA++L + I++E+
Sbjct: 611 GDVHHYKNRNELKAYIESEGGKVTGSVSKSTHYLINNDVKSTSGKNKKAKELNIPILSED 670

Query: 713 QFLF 716
            F+ 
Sbjct: 671 DFMA 674


>gi|325856672|ref|ZP_08172310.1| NAD-dependent DNA ligase OB-fold domain [Prevotella denticola CRIS
           18C-A]
 gi|325483386|gb|EGC86361.1| NAD-dependent DNA ligase OB-fold domain [Prevotella denticola CRIS
           18C-A]
          Length = 684

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 179/726 (24%), Positives = 301/726 (41%), Gaps = 78/726 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+ SL ++++   D YY   + ++ D E+DA   R   +            P+ P   +
Sbjct: 3   KEIQSLVKQLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQ----TGIVLPDSPTQNV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +      K  H  P LSL K   +EDL ++                   L  K+DG  
Sbjct: 59  SADNVAG-KKEKHEFPALSLAKTKKVEDLARWAE------------GKPIWLSWKLDGLT 105

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +   Y+ G+      RGDGH G +++   RAI     + ++     + +RGE  IS  DF
Sbjct: 106 LVATYDNGRLTKVVTRGDGHIGTNITHLSRAIEG--FLQTIPYRGHLVIRGEAVISYPDF 163

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
              N E        YANPRN ASG L   +  ++  R+L++    L  T E       E 
Sbjct: 164 EKFNMESEEA----YANPRNLASGSLTLKDINEVKQRHLHWIPFTLVYTEE-EIGSWGER 218

Query: 258 LQKMRCLG-FPVNNGVRQANTFHGIVSYYNEMKSI--------RST------LPYDIDGL 302
           +  +   G  PV+  +    T   I +  +   S         R         PY +DGL
Sbjct: 219 MAWLERQGFHPVDRELISRPTAENIQAVIDSWSSRVTGQALNTRYPEADTQRFPYPVDGL 278

Query: 303 VYKVDEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           V   D+ +             R   + K+ +++A T L  I+        ++PVA  +PV
Sbjct: 279 VITYDDTAYAATGSVTGHHATRAGYAFKWQDERAETELDYIEWSCAA-STISPVAVFQPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  A+L N    + L   GK          G ++ V +A ++IPKVV ++    
Sbjct: 338 ELEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKIIPKVVSVVER-- 385

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                 F  P  CP+C+S      +  +G       CT    C A+QL++   FVS++  
Sbjct: 386 ---MGIFHVPETCPVCRSATEVVESEASGTRT--LHCTND-HCPAKQLKKFGRFVSKEGV 439

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+GL +Q +  F         I   AD F L         ++  + GFGD SV+ L  +
Sbjct: 440 NIDGLSEQTVQKFIN----LGWICEYADFFHLNEHAL----QLRTMDGFGDRSVSKLLAA 491

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + K R++   R +F+L I  VG ++   L   Y   +       +     +DD  S   +
Sbjct: 492 VEKARSVEARRLLFALNIPLVGQDVCNRLLSAYPLKELIRTATES----TDDDVFST--I 545

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           P +G   +   V++ ++  N   ++ LL E++           S  +    V TG +   
Sbjct: 546 PGIGPEKSANFVQWMKDADNQPVLQHLLAELNVRQA-SSAPTGSGCQGLTFVITGDVHHY 604

Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R++ + Y+   G  V+  +S+ TD +I    ++   K +KA+ L + I++EE F+   
Sbjct: 605 KNRNELKAYIESQGGKVTGSVSKSTDFLINNDVESTSGKNQKAKALSIPIISEEDFIDRF 664

Query: 719 QQYNTT 724
            Q + +
Sbjct: 665 AQGSAS 670


>gi|322379217|ref|ZP_08053608.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS1]
 gi|321148357|gb|EFX42866.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS1]
          Length = 680

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 181/710 (25%), Positives = 305/710 (42%), Gaps = 123/710 (17%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L  ++  +   YY  + P+I D+ YD L R+       +P       P  P  ++
Sbjct: 6   EDYKHLVDKLCQYAYHYYVLASPLISDAIYDQLYRQVLDYETKYPQNIL---PYSPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY----------RFWQKKDDNSIF- 127
           GG +  +L K TH +   SLE ++N+E+L+ +I RI           R  Q     S   
Sbjct: 63  GGVVLETLPKHTHKVRMWSLENVFNLEELQVWINRIVESEHALKTKGRISQTYPSASFTR 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT  PK+DG  + + YE G+   A++RG+G  GE V+   + I +IP ++    P  IE+
Sbjct: 123 FTCSPKLDGASLNLYYENGQLQSASMRGNGLEGELVTHNAKTIHSIPLIIPYTKP--IEI 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           RGEV + + DF ALN E +      +AN RNA  G LR+L+      R L F+  GLG  
Sbjct: 181 RGEVVLQREDFKALNAERLKQNLPLFANARNATVGSLRQLDSKIAAQRKLTFYPWGLGLV 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E +     + +Q ++  GF ++       +   I   +    + RS + +D DG+V  +
Sbjct: 241 EEKY-TSLKQSMQMVKDWGF-LSLEFVLCESLEAIEETFKLFHTRRSEVTFDADGMVVML 298

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+  LQ  LG   +SPR+  ++KF   +  T+LLD+  Q+GR+G +TPVA LEP+ + GA
Sbjct: 299 DDLYLQSILGFTIKSPRFGFAYKFPATEKHTKLLDVLNQVGRSGAITPVALLEPIKLEGA 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+ ATL N   I+            + + + D V++ R+G+VIPK++  + + R+   +
Sbjct: 359 CISKATLDNYTQIQ-----------QQGLMINDTVVIVRSGDVIPKIIKPLKHLRNGTQK 407

Query: 427 P--------------------------------------------FSFPSFCPICQS--- 439
           P                                            F   + CP+CQ+   
Sbjct: 408 PITPPTHCPACQSVLQKQPLNVCPECNLPLLLKNKPNFCPKCQILFKKYTHCPVCQTLLG 467

Query: 440 -----------------RVVRDLNPKTGKLVAAHRC------------TGGLACSAQQLE 470
                              ++       K    +RC                 C A+  E
Sbjct: 468 KQHKKCPQCQSDVTFPKHCLQCGGDLELKEY-CYRCDLDLSNKDRYLFCPNKDCMARVKE 526

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            + +F S+    I+GLG + +    +    A  I+   D+++L+ +       +  + G+
Sbjct: 527 SIVYFASKHGLEIKGLGDKVVAQLLQ----AGLIKGVIDLYSLEEKA------LLELEGW 576

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
                 NL  +I K +   L RFI +LGI H+G   ++ LA+++   + F +    I + 
Sbjct: 577 QQKKAQNLLQAITKSKQAPLWRFISALGIEHIGKGASKILAQHFG-LEVFDKTYQEIASL 635

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                  L         IA + V F +   N   ++ LL  V+P     +
Sbjct: 636 EGFGAKGLKEEEK---KIAASFVRFVKE--NKGLIKQLLTLVNPIATEKK 680


>gi|317502616|ref|ZP_07960737.1| NAD-dependent DNA ligase LigA [Prevotella salivae DSM 15606]
 gi|315666297|gb|EFV05843.1| NAD-dependent DNA ligase LigA [Prevotella salivae DSM 15606]
          Length = 665

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 293/712 (41%), Gaps = 62/712 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E   + +  L  +++   + YY      + D E+DAL      +          + P+ 
Sbjct: 2   AEDKLRTMRELVDKLNSAANAYYNGQGEQMSDYEWDALFDEVKHLEKE----TGQQFPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P N++  +  +   K  H  P LSL K     +L K+                   L  K
Sbjct: 58  PTNRVSEDNIIG-KKEEHEFPALSLAKTKQPVELAKWAE------------EHPIWLSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  + + +  GK      RG+GH G +++    AI  IP+ +       + VRGE  I
Sbjct: 105 LDGLTLVVTFNNGKLTKVVTRGNGHIGTNITHLATAIQGIPQEIKNK--GHVVVRGECVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
           S  DF   N E        YANPRN ASG L   +  ++  R+L +    L  T E+   
Sbjct: 163 SYADFEQFNIESEEE----YANPRNLASGSLTLKDINEVKQRHLVWIPFTLVYTDEV-IT 217

Query: 253 GQYEMLQKMRCLGFPVNNGVRQAN----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + +  +   G          +        +++ + E  + +   PY +DGLV   D+
Sbjct: 218 SWGKRMDWLEKNGMKAVEREEIEHPTLQNIEQVIAKWTEKVTGKEN-PYPVDGLVITYDD 276

Query: 309 FSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            +  +          R  ++ K+ ++ A T L  ++        ++PVA   PV++ G  
Sbjct: 277 TAFAQTGSVTGHHATRAGLAFKWQDESADTVLDHVEWSCAA-NTISPVAVFSPVDLEGTS 335

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+L N    + L   G+          G ++ V +A ++IPKV+ +I      D   
Sbjct: 336 VKRASLCNISECERLGIGGQ----------GTKLSVIKANKIIPKVIRVIEKVGDLD--- 382

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C +     +   +        CT    C A+QL +   FVS++  NI+G+ 
Sbjct: 383 --IPCSCPVCNAPT--RITISSASETKTLHCTNP-KCPAKQLRKFARFVSKEGVNIDGMS 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +Q +  F         ++  AD++ L+        ++ +  GFG+ SV NL  SI K R+
Sbjct: 438 EQTVAKFIN----FGWVKTYADLYKLKDH----AIQLSSTDGFGEKSVRNLLRSIEKARD 489

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +    F+++L I   G ++ + L   Y                          +  +G  
Sbjct: 490 VEAHHFLYALSIPLCGQDVCKRLLSAYSLQDIITIASGKSENIVPASDSPFSLIAGIGPE 549

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKA 666
            +  +V ++ +  N+  VE LL++V  S         S  +    V TG +   + R++ 
Sbjct: 550 KSNQVVTWFHDEENLAMVEELLQQVRVSQENTAAEGDS-CKGLTFVVTGDVTHYKNRNEL 608

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLF 716
           + Y+   G  V+  +S+ TD +I  D     SK +KAQQLG+ I++EE+F+ 
Sbjct: 609 KAYIESQGGKVTGSVSKSTDYLINNDVASQSSKNQKAQQLGIPIISEEEFIE 660


>gi|325269002|ref|ZP_08135623.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608]
 gi|324988623|gb|EGC20585.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608]
          Length = 684

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 178/726 (24%), Positives = 297/726 (40%), Gaps = 78/726 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+  L   ++   D YY   + ++ D E+DA   R   +            P+ P   +
Sbjct: 3   KEIQRLVDRLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQ----TGIVLPDSPTQNV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +      K  H  P LSL K   +EDL ++                   L  K+DG  
Sbjct: 59  SADNVAG-KKEKHEFPALSLAKTKKVEDLARWAE------------GKPVWLSWKLDGLT 105

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +   Y+ G+      RGDGH G +++   RAI  I  + ++     + +RGE  IS  DF
Sbjct: 106 LVATYDNGRLTKVVTRGDGHIGTNITYLSRAIEGI--LQTVPYRGHLVIRGEAVISYPDF 163

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
              N E        YANPRN ASG L   +  ++  R+L++    L  T         E 
Sbjct: 164 EKFNMESEEA----YANPRNLASGSLTLKDINEVRQRHLHWIPFTLVYTEG-EIGSWGER 218

Query: 258 LQKMRCLG-FPVNNGVRQANTFHGIVSYYNEMKSI--------RST------LPYDIDGL 302
           +  +   G  PV+  +    T   I +  +   S         R         PY +DGL
Sbjct: 219 MAWLERQGFHPVDRELISRPTAGNIQAVIDSWSSRVTGQALNTRHPAADPQCFPYPVDGL 278

Query: 303 VYKVDEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           V   D+ +             R   + K+ +++A T L  I+        ++PVA  +PV
Sbjct: 279 VITYDDTAYAATGSVTGHHATRAGYAFKWQDERAETELDHIEWSCAA-STISPVAVFQPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  A+L N    + L   GK          G ++ V +A ++IPKVV ++    
Sbjct: 338 ELEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKIIPKVVSVVER-- 385

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                 F  P  CP+C+S      +  +G       CT    C A+QL +   FVS++  
Sbjct: 386 ---TGIFHVPETCPVCRSATEVVESEASGTRT--LHCTNA-HCPAKQLRKFGRFVSKEGV 439

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+GL +Q +  F         I   AD F L         ++  + GFGD SV+ L  +
Sbjct: 440 NIDGLSEQTVQKFIN----LGWICEYADFFHLNEHAL----QLRAMDGFGDRSVSKLLAA 491

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + K R++   R +F+L I  VG ++   L   Y   +       +     +DD  S   +
Sbjct: 492 VEKARSVEARRLLFALNIPLVGQDVCNRLLSAYPLKELIRTATES----TDDDVFST--I 545

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           P +G   + + V + ++  N   ++ LL E++           S  +    V TG +   
Sbjct: 546 PGIGPEKSASFVRWMKDEDNQPVLQHLLAELNVRQA-SFAPTGSSCQGLTFVITGDVHHY 604

Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R++ + Y+   G  V+  +S+ TD +I    ++   K +KA+ L + I++EE F+   
Sbjct: 605 KNRNELKAYIESQGGKVTGSVSKSTDFLINNDVESTSGKNQKAKALSIPIISEEDFIDRF 664

Query: 719 QQYNTT 724
            Q + +
Sbjct: 665 AQGSAS 670


>gi|315608256|ref|ZP_07883246.1| NAD-dependent DNA ligase LigA [Prevotella buccae ATCC 33574]
 gi|315250037|gb|EFU30036.1| NAD-dependent DNA ligase LigA [Prevotella buccae ATCC 33574]
          Length = 662

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 170/710 (23%), Positives = 295/710 (41%), Gaps = 66/710 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R+++    + ++   D YY     ++ D E+DAL  R   +     +      P+ P
Sbjct: 3   EDKRQQMRQFVERLNAASDAYYNGQPELMTDYEWDALFDRLRQLEEETGETL----PDSP 58

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+  +      K  H  P LSL K    E+L K+                   L  K+
Sbjct: 59  TAKVSADDVKG-QKEEHEFPALSLAKTKRPEELVKWAEGR------------PIWLSWKL 105

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +   Y+ G+      RG+GH G +++   +AI  +P  +         +RGE  IS
Sbjct: 106 DGLTLVATYDGGRLTKVVTRGNGHIGTNITHLAQAINGLPARIKSA--GHTVIRGEAVIS 163

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253
             DF   N E        YANPRN ASG L   +  +I  R++ +    L  T E     
Sbjct: 164 YEDFERFNMESDEE----YANPRNLASGSLTLKDVNEIKQRHIRWIPFTLVYTDE-EIDA 218

Query: 254 QYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSI--RSTLPYDIDGLVYKVDEFS 310
             + +  +   GF PV   +    T   + +              PY +DGLV   D+ +
Sbjct: 219 WGKRMDWLEANGFKPVERELIANPTLEEVETVIARWTEKVTHRINPYPVDGLVISYDDTA 278

Query: 311 LQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
                        R  ++ K+ ++ A T L  ++     T  ++PVA   PV + G  + 
Sbjct: 279 YAATGAVTGHHATRAGLAFKWQDEAAETELDHVEWSCA-TNTISPVAVFRPVELEGTTVK 337

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+L N    + L   G           G R+ V +A ++IPKV+ +I          F 
Sbjct: 338 RASLCNISECRRLGIGGS----------GTRLSVIKANKIIPKVIKVI-----ETVGEFD 382

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C +     ++  +        CT   AC A+QL++   FVS++A NI+G+ +Q
Sbjct: 383 IPGKCPVCCAPTEISISGMSDTET--LHCTND-ACPAKQLKKFTRFVSKEAMNIDGISEQ 439

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L  F         +   AD++ L+  Q+    ++  + GFG+ S  N+  S+ K R+  
Sbjct: 440 TLAKFIN----LGWVGEYADLYHLREHQR----ELAGLEGFGERSAANIMASVEKSRDAE 491

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R +F+L I   GA++ + L   Y      +       A   ++      +P +G   +
Sbjct: 492 AHRLLFALSIPLCGADVCKRLLSAYPLADLLS------TARTVENLDHFAHIPGIGPEKS 545

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQE 668
            + + + ++  N   V+ LL E+  S    E    ++      V TG +   + R++ + 
Sbjct: 546 ASFINWNRSQANQQLVDHLLCEIRVS-QVSEVPQGNKCAGLTFVITGDVYHFKNRNELKS 604

Query: 669 YVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716
           Y+   G  V+  +S  T  +I    ++   K +KA+ LG++I++E+ F+ 
Sbjct: 605 YIESEGGKVAGSVSGATSFLINNDVESTSGKNKKAKLLGIEIISEDDFIS 654


>gi|328869954|gb|EGG18329.1| BRCT domain-containing protein [Dictyostelium fasciculatum]
          Length = 842

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 192/802 (23%), Positives = 334/802 (41%), Gaps = 129/802 (16%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-- 70
           S  Q   ++ +L  +I+ ++D YY  S+ +I D EYD L ++ + +   +          
Sbjct: 67  SRNQLVDDIKTLRNDINKYNDLYYNKSETVISDFEYDMLFKKLETLEQLYESQYSGSTDL 126

Query: 71  ------PNGPLNKIGGEMNLSL----FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
                    P+N++G  +  +      KV H +  LSL+  ++ EDL  F +R+     K
Sbjct: 127 SASGSGSTTPINQVGAPIATAGNERGEKVKHIVRMLSLDNTYSKEDLMAFESRVLGNLSK 186

Query: 121 KDDN--------SIFFTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRA-I 170
                       ++ F+ E K DG  ++I Y+  GK    A RGDG  GE ++      I
Sbjct: 187 SSSGISNNNNNNNLEFSCELKYDGIGLSIVYDSFGKLERIATRGDGDIGEIITTNALYYI 246

Query: 171 PTIPRV------------LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           P++P+             L+L   + IEVRGEV   K+    LN          Y N RN
Sbjct: 247 PSLPKQISTSHLVNNNNNLTLGQNDKIEVRGEVVFKKSQLEKLNTWRSMNDEVEYKNTRN 306

Query: 219 AASGILRR-LNPTDITR------YLNFFVHGL----------------GKTSEIFAKGQY 255
             SG LR  L+P             +F  + L                   +        
Sbjct: 307 IVSGKLRSILDPKQEELDNPFGIEFDFISYQLFIHQNQNNQINNNQNNNNQNNNNTNTHN 366

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHG-----IVSYYNEM-KSIRSTLPYDIDGLVYKVDEF 309
             +  +  +GF ++       +        +  +        R +  +DIDG+V KV+  
Sbjct: 367 NNIILLEKIGFNIDRNAILVGSLSQRDSSRLEEFIKMWSGEKRESFDWDIDGIVVKVNSL 426

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q  LG+  RSPRW +++KF  +   T +  I +QIGR+G +TPVA +EPV+I G  ++
Sbjct: 427 EKQAILGQANRSPRWAVAYKFGARSMPTVVKSIQLQIGRSGKVTPVAEVEPVDIHGVTVS 486

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP-F 428
            ATL+N  +I+ L            +R G RVLV+RAG+VIPK++  +  +     +   
Sbjct: 487 RATLNNLLFIQKL-----------GVRTGSRVLVERAGDVIPKIIQSLDAKEPMTKKELL 535

Query: 429 SFPSFCPI---------CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
                CP          C   +   L+   G     + C     C  Q+L+ +  +VS+D
Sbjct: 536 DMFDRCPTSATDGDSLKCPCALGSPLSQPDG--YQDYYCF-ESNCPNQRLQSISWYVSKD 592

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
             N+ G+G  Q+    +       I+   D+++L  ++     ++  + GF D  V N+ 
Sbjct: 593 GMNMTGIGPSQIKVLLE----YGLIQDIGDLYSLADKK----DQLLKLRGFSDKKVANMI 644

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           +S+ K +  +L     +LGI  VG    + LA+ + + ++ A                + 
Sbjct: 645 ESVEKSKKENLAHLFCALGIPGVGKASCKWLAERFTTIESLATA----------SLQDIE 694

Query: 600 RVPLVGDIIAQAIVEFYQNPRNI---------CAVEALLKEVSPSIGRHEK--------- 641
            V  +G  I+  I  ++                 ++      S S  R++          
Sbjct: 695 VVGDLGPNISTNIYYYFHPTDQQSKDGIEKLLSIIQKHNVYDSQSQNRNQNRSDEKKNSS 754

Query: 642 ----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT-QLGAVVSAILSRKTDIIIVGDNPG- 695
                 SS  ++K +V TG  + + R + Q+ V    G ++ + + + T+ +++G + G 
Sbjct: 755 TTTLQQSSIFKDKNVVVTGKFKNMTREEIQDIVQHNFGGIIQSQIRKNTNYLLMGQDAGS 814

Query: 696 SKLEKAQQLGVKIMNEEQFLFL 717
           SK+ KA+Q G  I+ E +F  L
Sbjct: 815 SKITKAEQNGTTIITENEFDDL 836


>gi|282881715|ref|ZP_06290378.1| DNA ligase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304474|gb|EFA96571.1| DNA ligase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 655

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 168/709 (23%), Positives = 288/709 (40%), Gaps = 66/709 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++ +  L  +++   D YY     ++ D E+DAL      +       +    P+ P 
Sbjct: 2   DIQQRMRKLVDKLNLASDNYYGGKPELMTDYEWDALFDELKQLE----MSSGVVLPDSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           N++         K  H  P LSL K     DL K+                   L  K+D
Sbjct: 58  NRVSDGEMNG-KKEAHEFPALSLAKTKQPADLVKWAE------------GKPVWLSWKLD 104

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +   Y+ G+      RG+GH G +++   +AI  +P  +         +RGE  IS 
Sbjct: 105 GLTLVATYDDGRLSKVVTRGNGHIGTNITHLAKAIGGMPATI--PFQGHTVIRGEAVISY 162

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
            DF   N E        YANPRN ASG L   +  ++ R  + +    L    +   K  
Sbjct: 163 ADFEVFNLESDDA----YANPRNLASGSLTLKDVKEVERRHIQWIPFTLVFVEQ-EIKTW 217

Query: 255 YEMLQKMRCLG-FPVNNGVRQANTFHGIVSYYNEMKSI--RSTLPYDIDGLVYKVDEFSL 311
            E +  +   G  PV        +   +            +   P+ +DGLV   D+ S 
Sbjct: 218 GEQMDWLEQQGFHPVERERINEPSLPVVEQVIERWTEKVTQKRNPFPVDGLVVVFDDISF 277

Query: 312 QKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
                       R  ++ K+ ++ A+T L  I+        ++PVA   PV + G  +  
Sbjct: 278 AATGSVTGHHATRAGLAFKWQDEAATTTLRHIEWSCAA-STISPVAVFAPVELEGTTVQR 336

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+L N    K L   G           G  + V +A ++IPKV+ +I +        F  
Sbjct: 337 ASLCNISECKRLGIGG----------PGSTLSVIKANKIIPKVIRVIQS-----VGTFDI 381

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C    V   +  +G L     CT   AC A+Q+++   FVS+   NI+G+ +Q 
Sbjct: 382 PKSCPVCHHEAVVRESAVSGTLT--LHCTNE-ACPAKQIKKFDRFVSKAGMNIDGISEQT 438

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           LD F         I   ADI+ L         ++ ++ GFG+ S+ N+  SI + R +  
Sbjct: 439 LDKFIN----LGWIETYADIYRLSAH----AAELASLEGFGEKSMRNIMQSIEQSRTVEA 490

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
             F+++L I   G ++ + L + Y   +  +      +A       +   +P +G   + 
Sbjct: 491 HHFLYALSIPLCGVDVCKRLLEAYPLAELIS------VATTATSLDAFAHIPGIGPEKSA 544

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEY 669
           ++V ++Q   N   V  LL EV        +   +  +    V TG +   + R + + Y
Sbjct: 545 SLVTWFQGEANQRIVNDLLSEVQIE-EPSLQPQGARCQGMTFVITGDVHHYKNRAELKSY 603

Query: 670 VTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
           +   G  V+  +S+ T  +I  D  +   K +KA+ LG+ I++E++F+ 
Sbjct: 604 IESQGGKVTGSVSKSTTYLINNDVNSTSGKNKKAKDLGISIISEDEFVE 652


>gi|238924576|ref|YP_002938092.1| DNA ligase, NAD-dependent [Eubacterium rectale ATCC 33656]
 gi|238876251|gb|ACR75958.1| DNA ligase, NAD-dependent [Eubacterium rectale ATCC 33656]
          Length = 656

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 168/713 (23%), Positives = 299/713 (41%), Gaps = 67/713 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   + + ++  L + ++     YY  +  I+ + E+DA+      +      +      
Sbjct: 1   MENNKIKDKIDELVESLNRASKAYYNGADEIMPNYEWDAMFDELTQLEKETGYIRH---- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P    G E      +  H  P LSL K  +IE+L+K+               +   L 
Sbjct: 57  DSPTQNAGYEAEAG-NREPHEYPALSLAKTKSIEELKKWA------------GDMPIWLS 103

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y+ G+ V    RG+G  G +++    AI   P+ +       + VRGE 
Sbjct: 104 WKLDGLTLVLTYDGGRLVKILTRGNGTVGSNITFLQDAISGFPKEI--PYKGHMVVRGEA 161

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
            IS  DF  LND +     K YANPRN ASG L   +  ++ R  + F+   L    +  
Sbjct: 162 TISYTDFKLLNDTIEDDDEK-YANPRNLASGTLNLDDVEEVKRRHVVFYAFTLVHIDDDI 220

Query: 251 AKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYY-NEMKSIRSTLPYDIDGLVYKVDE 308
                + +  +  + F V       A      V  +  +++S R  +   +DGLV   D+
Sbjct: 221 I-SWGDRMSYLSDMKFNVVKREATDAAGLDEAVKRWTRDVESGR--MDVPVDGLVICYDD 277

Query: 309 FSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            +             R   + K+ ++   TRL  I+        ++PVA  EPV I G  
Sbjct: 278 TAYAAGGSVTGHHATRAGFAFKWQDEAVDTRLRYIEWSCA-VSTISPVAVFEPVQIEGTT 336

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+L N   I+ L    +             + V +A ++IPK + +           
Sbjct: 337 VSRASLCNLTEIERLGVGKE-----------CTLSVIKANKIIPKCIAV-----KDAVGE 380

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C       ++  +G  V    CT    C+A+ +++   FVS+   +I+GL 
Sbjct: 381 VEIPKECPVCHHPTRIFVSKNSG--VKTLHCTNP-DCTAKNVKKFSRFVSKSGMDIDGLS 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            Q +  F         I+   DI+ L         KI ++ GFG+ S  N+  +I K R+
Sbjct: 438 VQTMLKFINE----GFIKQFPDIYHLPEH----FDKISSMEGFGEKSCMNMQTAIEKSRH 489

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +     IF+L I  +G +  + +      +  FA  + N            + +  +G  
Sbjct: 490 VHPVNLIFALCIPLIGTDAGKKIVNAIG-FDGFADRMRNA--------TDFVDIDGIGQE 540

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKA 666
            + +I+E+Y NP+N    EAL+KE+       +      +  K  V TG +     R + 
Sbjct: 541 KSGSILEWYANPQNSTMFEALIKELDIEKVDIKDMSEGSLNGKTFVITGDVHDFANRSEF 600

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + YV   G  V+  +S+KTD ++    ++  SK +KA++LG+ I++E+ F+ +
Sbjct: 601 KAYVESQGGKVTGSVSKKTDYLVNNDTESTSSKNKKAKELGIPIISEDTFIEM 653


>gi|291529755|emb|CBK95341.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Eubacterium rectale M104/1]
          Length = 709

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 167/751 (22%), Positives = 300/751 (39%), Gaps = 97/751 (12%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L  +++   + YY     I+ + E+D +  +   +     +      P+ P +K+G
Sbjct: 6   RMKELVNKLNEASNAYYNGKDEIMSNHEWDTMFDQLAQLE----EETGIILPDSPTSKVG 61

Query: 80  GEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            +      L KV H  P LSL+K  +I +  K  ++                +  K+DG 
Sbjct: 62  ADEIGGNGLKKVRHEFPALSLDKTKDIYEFPKVFSKAASG---------DCVVMHKLDGC 112

Query: 138 MITIRYEKGK------FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            + + Y+  +       V A  RG+G  G D++     I  IP  +       + VRGE 
Sbjct: 113 TLCLTYDGSRNGGCGRLVQAVTRGNGEIGSDMTYQASYIEGIPMTIGFK--GKLIVRGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF- 250
            ++ ++F  +N  +   G + Y+NPRN A+  +    P    R + F    L        
Sbjct: 171 LMTYSEFERINSNLEE-GEEEYSNPRNLANSTITMKEPGLKGRKVIFKAFKLVYMEPAAD 229

Query: 251 -----AKGQYEMLQKMRCLGFPVNNGVRQANTF-----------HGIVSYYNEMKSIRST 294
                    +  L  +  LGF V      A  +             I++  N       T
Sbjct: 230 DKIEVPATFFGALTLLERLGFGVVEH-ELARAYSSNPDVDSDLPDQIINVMNSFSDRVET 288

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRW--MISHKFAEKQASTRLLDIDIQIGRTGIL 352
           L Y +DGLV   D++     L      P      + K+A++   T L +I+    RTG +
Sbjct: 289 LDYPVDGLVVASDDYKTADALPVTGHHPNRLTGFAFKWADECVETTLREIEWSPSRTGRI 348

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
            PVA  +PV + G  +T A++HN   +K L            +RVGD++ V +A ++IP 
Sbjct: 349 NPVAVFDPVQLEGTTVTRASVHNVSIVKKLR-----------LRVGDKISVFKANKIIPC 397

Query: 413 VVDIIVNERHPDAQPF--SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           +   +      D   +  S    CP+C       +     + V    CT    C+ +Q++
Sbjct: 398 IDKNLT---PGDELTYAESHACTCPVCGMETSPMITHSGDRDVEVEMCTNP-NCAVKQVK 453

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
           +  HF  RD  +I GL ++ L+ F +       I+  AD++ L   ++     I  + GF
Sbjct: 454 KFVHFCERDCMDIVGLSEKTLEKFIEK----GFIKQLADLYRLDTFERN----IAAMDGF 505

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           G  S  N++ SI   R  +   FI +LGI  VG   A+   K Y    N  +  N++   
Sbjct: 506 GQKSYDNIWKSIQISRKTTFVPFIHALGIPMVGKGQAKLFDKAYK--GNVKKFFNDVYNR 563

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFY------------------QNPRNICAVEALLKEV 632
                     +  +G+ I  ++ ++                   +   N    + L    
Sbjct: 564 KT-----FTDIDGIGEKIELSLWDWGSRYLGWIPFEKDLLDEMRRTSCNTEVYDLLRWID 618

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                         +  K  V TG++   + R + Q  + +LG   +  +++KT  +I  
Sbjct: 619 VEIPAEANVAGKDILSGKTFVITGSVNHFKNRAELQAKIEELGGKATGSVTKKTSYLINN 678

Query: 692 --DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             ++   K +KA++LGV I++E++FL ++ +
Sbjct: 679 DVESTSGKNKKAKELGVPIISEDEFLEMIGE 709


>gi|291525249|emb|CBK90836.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Eubacterium rectale DSM 17629]
 gi|291529292|emb|CBK94878.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Eubacterium rectale M104/1]
          Length = 656

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 168/713 (23%), Positives = 299/713 (41%), Gaps = 67/713 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   + + ++  L + ++     YY  +  I+ + E+DA+      +      +      
Sbjct: 1   MENNKIKDKIDELVESLNRASKAYYNGADEIMPNYEWDAMFDELTQLEKETGYIRH---- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P    G E      +  H  P LSL K  +IE+L+K+               +   L 
Sbjct: 57  DSPTQNAGYEAEAG-NREPHEYPALSLAKTKSIEELKKWA------------GDMPIWLS 103

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y+ G+ V    RG+G  G +++    AI   P+ +       + VRGE 
Sbjct: 104 WKLDGLTLVLTYDGGRLVKILTRGNGTVGSNITFLQDAISGFPKEI--PYKGHMVVRGEA 161

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
            IS  DF  LND +     K YANPRN ASG L   +  ++ R  + F+   L    +  
Sbjct: 162 TISYTDFKLLNDTIEDDDEK-YANPRNLASGTLNLDDVEEVKRRHVVFYAFTLVHIDDDI 220

Query: 251 AKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYY-NEMKSIRSTLPYDIDGLVYKVDE 308
                + +  +  + F V       A      V  +  +++S R  +   +DGLV   D+
Sbjct: 221 I-SWGDRMSYLSDMKFNVVKREATDAAGLDEAVKRWTRDVESGR--MDVPVDGLVICYDD 277

Query: 309 FSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            +             R   + K+ ++   TRL  I+        ++PVA  EPV I G  
Sbjct: 278 TAYAAGGSVTGHHATRAGFAFKWQDEAVDTRLRYIEWSCA-VSTISPVAVFEPVQIEGTT 336

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+L N   I+ L    +             + V +A ++IPK + +           
Sbjct: 337 VSRASLCNLTEIERLGVGKE-----------CTLSVIKANKIIPKCIAV-----KDAVGA 380

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C       ++  +G  V    CT    C+A+ +++   FVS+   +I+GL 
Sbjct: 381 VEIPKECPVCHHPTRIFVSKNSG--VKTLHCTNP-DCTAKNVKKFSRFVSKSGMDIDGLS 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            Q +  F         I+   DI+ L         KI ++ GFG+ S  N+  +I K R+
Sbjct: 438 VQTMLKFINE----GFIKQFPDIYHLPEH----FDKISSMEGFGEKSCMNMQTAIEKSRH 489

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +     IF+L I  +G +  + +      +  FA  + N            + +  +G  
Sbjct: 490 VHPVNLIFALCIPLIGTDAGKKIVNAIG-FDGFADRMRNA--------TDFVDIDGIGQE 540

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKA 666
            + +I+E+Y NP+N    EAL+KE+       +      +  K  V TG +     R + 
Sbjct: 541 KSGSILEWYANPKNSAMFEALIKELDIEKVDIKDMSEGSLNGKTFVITGDVHDFANRSEF 600

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + YV   G  V+  +S+KTD ++    ++  SK +KA++LG+ I++E+ F+ +
Sbjct: 601 KAYVESQGGKVTGSVSKKTDYLVNNDTESTSSKNKKAKELGIPIISEDTFIEM 653


>gi|302538378|ref|ZP_07290720.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
 gi|302447273|gb|EFL19089.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
          Length = 699

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 189/714 (26%), Positives = 303/714 (42%), Gaps = 68/714 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E +            YY      + D+ +D L     A   A+P+     DP  P  K
Sbjct: 26  RDEYADAIATAVKASAAYYGSGGSPLDDASFDLLVSLIQAYEAAYPEHV---DPASPTGK 82

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           + G       +V H+   LSL   +  +DL  +   + R           + +EPK+DG 
Sbjct: 83  VAGGAVAG-GEVAHTAAMLSLANAFGPQDLLDWEASLVRRLGGPVTGG--YAVEPKLDGA 139

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +  RY  G+ V    RGDG SGEDVS  I  I  +P  L L +    EVRGEV ++   
Sbjct: 140 SLAARYRAGRLVQLVTRGDGTSGEDVSHAIGTIVGLP--LELAVEATFEVRGEVLLTAEQ 197

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE---IFAKGQ 254
           F   N      G  P++N RN A+G LR       T  ++F+     +      +     
Sbjct: 198 FERANRTRAEHGAGPFSNARNGAAGTLRAKG-RAYTVEMSFWAFAAVELEGGTALPGTTH 256

Query: 255 YEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            E++  +   G             A T  G     + +  +R+ LP+ IDG+V K+D  +
Sbjct: 257 SEVMAYVAAAGVRTAADTAAGLTVAATAAGAQEQVDRIAGMRAGLPFGIDGVVVKLDSLA 316

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q   G  +R P W  ++K A  +  TRLLD+   +GRTG+L P A LEPV + G+++ +
Sbjct: 317 EQAAAGTGSRHPHWATAYKLAAVERRTRLLDVTWAVGRTGVLAPTAVLEPVEVDGSVVRH 376

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   I             R + +GD V V +AG+VIP+V   +V  R    +P   
Sbjct: 377 ATLHNPADIAR-----------RGLLIGDTVTVYKAGDVIPRVEAPVVELRTGAERPVVV 425

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP CQ  + R             RC     C   ++  + +   RD  +I+GLG++ 
Sbjct: 426 PEVCPGCQGEIDRSQER--------WRCAQPADCG--RIAAILYAAGRDQLDIDGLGERY 475

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    + E     +R  AD+FTL                  +     L + I   + + L
Sbjct: 476 VRALVEEEG----VRDVADLFTLDPAALARAA-------GSEKRAVKLAERIEAAKALPL 524

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R   +LG+   G  ++R +A+++ + +          A    D  ++  V LVG+  A 
Sbjct: 525 SRVFCALGVVGTGRGMSRRIARHFGTME----------AVRAADAAAMTAVELVGETKAA 574

Query: 611 AIVEFYQNPRNI--CAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQK----- 660
           AIV        +      A ++ V P +       +  +  +  + +V TG +       
Sbjct: 575 AIVAQVAELGPVIDKLAAAGVRPVEPQVPAAAPAGEAEAGPLAGQNVVVTGKMTGALAAY 634

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             R + +E + + G   S  +S KT +++ G+  GSK+ KA+  G++I+ EE F
Sbjct: 635 DTRDRVRELIERAGGRSSGSISGKTTLLVAGEKAGSKVAKAEAAGIEILGEEAF 688


>gi|288925794|ref|ZP_06419725.1| DNA ligase [Prevotella buccae D17]
 gi|288337449|gb|EFC75804.1| DNA ligase [Prevotella buccae D17]
          Length = 654

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 169/704 (24%), Positives = 291/704 (41%), Gaps = 66/704 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +    + ++   D YY     ++ D E+DAL  R   +     +      P+ P  K+  
Sbjct: 1   MRQFVERLNAASDAYYNGQPELMTDYEWDALFDRLRQLEEETGETL----PDSPTAKVSA 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +      K  H  P LSL K    E+L K+                   L  K+DG  + 
Sbjct: 57  DDVKG-QKEEHEFPALSLAKTKRPEELVKWAEGR------------PIWLSWKLDGLTLV 103

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
             Y+ G+      RG+GH G +++   +AI  +P  +         +RGE  IS  DF  
Sbjct: 104 ATYDGGRLTKVVTRGNGHIGTNITHLAQAINGLPARIKSA--GHTVIRGEAVISYEDFER 161

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
            N E        YANPRN ASG L   +  +I  R++ +    L  T E       + + 
Sbjct: 162 FNMESDEE----YANPRNLASGSLTLKDVNEIKQRHIRWIPFTLVYTDE-EIDAWGKRMD 216

Query: 260 KMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSI--RSTLPYDIDGLVYKVDEFSLQKQLG 316
            +   GF PV   +    T   + +              PY +DGLV   D+ +      
Sbjct: 217 WLEANGFKPVERELIANPTLEEVETVIARWTEKVTHRINPYPVDGLVISYDDTAYAATGA 276

Query: 317 ERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
                  R  ++ K+ ++ A T L  ++     T  ++PVA   PV + G  +  A+L N
Sbjct: 277 VTGHHATRAGLAFKWQDEAAETELDHVEWSCA-TNTISPVAVFRPVELEGTTVKRASLCN 335

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
               + L   G           G R+ V +A ++IPKV+ +I          F  P  CP
Sbjct: 336 ISECRRLGIGGS----------GTRLSVIKANKIIPKVIKVI-----ETVGEFDIPGKCP 380

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C +     ++  +        CT   AC A+QL++   FVS++A NI+G+ +Q L  F 
Sbjct: 381 VCCAPTEISISGMSDTET--LHCTND-ACPAKQLKKFTRFVSKEAMNIDGISEQTLAKFI 437

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   +   AD++ L+  Q+    ++  + GFG+ S  N+  S+ K R+    R +F
Sbjct: 438 N----LGWVGEYADLYHLREHQR----ELAGLEGFGERSAANIMASVEKSRDAEAHRLLF 489

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +L I   GA++ + L   Y      +       A   ++      +P +G   + + + +
Sbjct: 490 ALSIPLCGADVCKRLLSAYPLADLLS------TARTVENLDHFAHIPGIGPEKSASFINW 543

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLG 674
            ++  N   V+ LL E+  S    E    ++      V TG +   + R++ + Y+   G
Sbjct: 544 NRSQANQQLVDHLLCEIRVS-QVSEAPQGNKCAGLTFVITGDVYHFKNRNELKSYIESEG 602

Query: 675 AVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
             V+  +S  T  +I  D  +   K +KA+ LG++I++E+ F+ 
Sbjct: 603 GKVAGSVSGATSFLINNDVKSTSGKNKKAKLLGIEIISEDDFIS 646


>gi|320527941|ref|ZP_08029107.1| NAD-dependent DNA ligase OB-fold domain protein [Solobacterium
           moorei F0204]
 gi|320131567|gb|EFW24131.1| NAD-dependent DNA ligase OB-fold domain protein [Solobacterium
           moorei F0204]
          Length = 658

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 178/711 (25%), Positives = 302/711 (42%), Gaps = 69/711 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + +  +  +++   D YY      + D E+DAL  R   +     +       + P
Sbjct: 3   EDKLELMRQMVAQLNQAADAYYDGKAEQMTDYEWDALFDRLKKLE----EETGVVLEDSP 58

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+  +      K  H    LSL K    E++ K+                   +  K+
Sbjct: 59  TMKVSSDHTAG-QKEAHEFLALSLAKTKKPEEVEKWAE------------GKPIWISWKL 105

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + + Y+ GK      RGDGH G +++    AI  IP+ +S      + +RGE  IS
Sbjct: 106 DGLTLVVTYDNGKLSKVVTRGDGHIGTNITHLSSAIHGIPQTISEK--GHLVIRGEAVIS 163

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
             DF       +    + YANPRN ASG L   +  ++  R +++    L  T E     
Sbjct: 164 YEDFNQF----VMESGEDYANPRNLASGSLTLKDIEEVKKRQIHWIPFTLVYTEE-DITS 218

Query: 254 QYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTL--PYDIDGLVYKVDEFS 310
             + +  M  LGF V      +  T   I     +     +    PY +DGLV   D+  
Sbjct: 219 WGKRMDYMEKLGFQVVERECVEHPTLANINKEIEQWTKKVTDAINPYPVDGLVVVYDDTE 278

Query: 311 LQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
                        R   + K+ ++   ++L  I+        +TPVA  EPV I G  + 
Sbjct: 279 YASGGSVTGHHATRAGFAFKWQDESVLSKLEYIEWSCAA-STITPVAVFEPVEIEGTTVK 337

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+L N    K L              VG  V V +A ++IPKV+ +           F 
Sbjct: 338 RASLCNISECKRLGIGD----------VGSEVEVIKANKIIPKVISV-----KHAEGSFH 382

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C S+ + D++ +  +     +CT   +C A++L++   FVS+   +I+G+ +Q
Sbjct: 383 IPETCPVCHSKTIVDMSERGTET---LKCTNP-SCPAKKLKKFNRFVSKAGMDIDGISEQ 438

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L  F         I    DIF L +       +I ++ GFG+ S TN+ +SI++ R I 
Sbjct: 439 TLARFINE----GWITKYGDIFRLSKHH----EEITDLEGFGEKSATNIMESIDRAREID 490

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             + +++L I  +G ++A+ L   Y   +  +      IA N +       +  +G   +
Sbjct: 491 ESKLVYALNIPLIGKDVAKRLLSVYPFRELVS------IARNTETTEVFSSIDGIGPEKS 544

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QRHKAQ 667
            A V + ++P NI  +E LL E++    R    +S  + E    V TG +     R++ +
Sbjct: 545 NAFVSWCKDPENISQLEDLLDEITLQ--RTNTVLSGNLCEGLTFVVTGDVHHYANRNELK 602

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
            Y+   G  V+  +S+ T+ +I  D  +  SK  KA+QL + I++EE+F+ 
Sbjct: 603 AYIESQGGKVTGSVSKSTNYLINNDVTSSSSKNTKAKQLNIPILSEEEFIA 653


>gi|257439785|ref|ZP_05615540.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
 gi|257197805|gb|EEU96089.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
          Length = 449

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 141/488 (28%), Positives = 238/488 (48%), Gaps = 41/488 (8%)

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           ++ FV  + +          E L  ++ LG PV+      +     ++   ++   R+ L
Sbjct: 1   MSIFVFNVQQVRGRELTSHAESLDYLKSLGLPVSPRYHIVHDIEDAIAEIEQIGQNRAAL 60

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            +D+DG V KV+ F+ ++ LG   + PRW I+ K+  +   T L  I++ +GRTG+LTP 
Sbjct: 61  DFDMDGAVIKVNNFAQRELLGSTNKFPRWAIAFKYPPEVKETTLRSIEVGVGRTGVLTPT 120

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A  +PV + G  ++ ATLHNED+I+ L            + +GD + V++AG++IP+V+ 
Sbjct: 121 ACFDPVFLAGTTVSRATLHNEDFIRQL-----------GLCIGDTIQVRKAGDIIPEVIG 169

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           +      PDAQP+  P FCP C +  V   +       AA RC     C AQ L  + HF
Sbjct: 170 V--TRHEPDAQPYQMPEFCPSCGAPAVHLEDE------AALRCVNP-ECPAQALRNIIHF 220

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            SRDA +I+GLG                +   AD++ L   Q  +  K      F + S 
Sbjct: 221 ASRDAMDIDGLGTMVATQLVDK----GLVHSAADLYDLTIEQLLTLEK------FKEKSA 270

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL  +I   +  +L++ +F+ GIR++G + A  LA+++ S Q   +     I       
Sbjct: 271 NNLLQAIEASKQNNLDKLMFAFGIRNIGDKAAALLAEHFGSLQAIREATEEQIG------ 324

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
                +   G ++AQ++ EF+        V  L  +   ++    +    ++  K LV T
Sbjct: 325 ----EIDGFGGVMAQSVTEFFAKDGTTDLVHRL-ADAGVNMQWKGEPKGDKLAGKTLVVT 379

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL+ + R +A+  + + G   S  +S+KT  ++ G   GSKL KAQ LGV ++ E +FL
Sbjct: 380 GTLETLSRSEAEALIVKNGGKASGSVSKKTAYVVAGAAAGSKLTKAQALGVPVLTEVEFL 439

Query: 716 FLLQQYNT 723
            ++ +  +
Sbjct: 440 AMIAEDKS 447


>gi|283769205|ref|ZP_06342109.1| NAD-dependent DNA ligase domain protein [Bulleidia extructa W1219]
 gi|283104181|gb|EFC05560.1| NAD-dependent DNA ligase domain protein [Bulleidia extructa W1219]
          Length = 656

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 165/709 (23%), Positives = 304/709 (42%), Gaps = 69/709 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++ + +L Q+++   + YY   + I+ D E+D L     A+            P+ P 
Sbjct: 2   RKKERMLALIQQLNEASNAYYNGQREILSDQEWDRLFDELKALEEQ----TGLILPDSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+  +  +   K  H  P LSL K  ++ +L K+                   +  K+D
Sbjct: 58  QKVSADEIVG-QKEIHEFPALSLAKTKSVNELVKWAD------------GHPIWMSWKLD 104

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YEKGK      RGDGH G +++  +  +  IP+ +    P  + VRGE  IS 
Sbjct: 105 GLTLVVTYEKGKLEKVVTRGDGHVGTNITHLVDGLFGIPKEIR--YPGRLIVRGEAIISY 162

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
            DF    ++ +    + YANPRN ASG L     +++  R ++F    L    +      
Sbjct: 163 VDF----EQYVRETGENYANPRNLASGSLSLKKASEVLERKIHFRPFTLVHCDQ-EINSW 217

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHG----IVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + +  +  LGF V                ++  ++E    R   PY +DGLV   ++  
Sbjct: 218 GDRMGFLTKLGFDVVEHTFIEKPSEESVQKVLKQFSEKVKQRKN-PYPVDGLVIVYEDIQ 276

Query: 311 LQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
                        R  ++ K+A++   ++L+ ++        +TPVA  EPV + G  + 
Sbjct: 277 YASSGTVTGHHATRSGLAFKWADQSKLSKLIRVEWS-NAISTITPVAVFEPVELEGTTVQ 335

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+L N    + L               G  V V +A  +IPKV+ ++            
Sbjct: 336 RASLANISECERLGIGSG----------GTEVEVIKANMIIPKVISVVKK-----VGNLE 380

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C       ++          +C+    C A+ L++   FVS+   +I+G+ + 
Sbjct: 381 IPTLCPVCGKPT--KIHVSEISETKTLKCSNA-HCPAKALKKYVRFVSKQGMDIDGISEA 437

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L  F         I+   DI+ L+ R++     IEN+ GFG  S  N+  S+ K + + 
Sbjct: 438 TLSTFIAQ----GWIQNYGDIYRLKDRKEA----IENLDGFGLKSAENILTSLEKAQVVR 489

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ++F+F+L I  VG ++A  L + Y   +         +            +  +G   +
Sbjct: 490 GDKFLFALSIPLVGIDVASRLLRVYPLMELITLAKEKELDF-------FSHIDGIGPQKS 542

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQE 668
           +A V + ++  N   +E LL  ++     H+ +  S ++    V TG +   + R++ +E
Sbjct: 543 EAFVRWMKDLNNQKEMEDLLSFLTIE-DLHKVSHDSVLDGLTFVVTGEVHYFKNRNELKE 601

Query: 669 YVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
           +++  G  V++++S  TD +I  D  +  SK  KA+ LG+ I++E  F+
Sbjct: 602 WISARGGKVASVVSGSTDFLINNDIHSTSSKNAKAKSLGIPILSEADFM 650


>gi|281420079|ref|ZP_06251078.1| putative DNA ligase [Prevotella copri DSM 18205]
 gi|281405879|gb|EFB36559.1| putative DNA ligase [Prevotella copri DSM 18205]
          Length = 656

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 175/715 (24%), Positives = 301/715 (42%), Gaps = 67/715 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E+   ++ SL + ++   D YY     ++ D E+DAL  +   +     ++     PN 
Sbjct: 1   MEEKLLQMKSLVERLNQASDSYYNGKGELMTDYEWDALFDQLKRLEEETGEIL----PNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P N++  +  +   K  H    LSL K   + DL K+                   +  K
Sbjct: 57  PTNRVSEDSIVG-KKEEHEFAALSLAKTKQVSDLVKWAEDR------------PIWISWK 103

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  + + Y+ GK      RG+GH G +++    AI  IP  +S      + VRGE  I
Sbjct: 104 LDGLTLVVTYDGGKLTKIVTRGNGHIGTNITHLAPAISGIPATISEK--GHLVVRGEAVI 161

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
           S  DF    ++ I      YANPRN ASG L   +  ++  R++ +    L  T E    
Sbjct: 162 SYADF----EQFIIESEGDYANPRNLASGSLTLKDIEEVKQRHIQWIPFTLVYT-ERELS 216

Query: 253 GQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSI--RSTLPYDIDGLVYKVDEF 309
              E +Q ++ LG  PV        T   I    ++          P+ +DGLV   D+ 
Sbjct: 217 SWGERMQMLKDLGMNPVERERIDHPTTENIQLEIDKFTEKVTSKKNPFPVDGLVICYDDT 276

Query: 310 SLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           +             R   + K+ ++ A T L  I+        +TPVA  +PV + G  +
Sbjct: 277 AYAATGSVTGHHATRAGFAFKWQDEHADTVLDHIEWSCAA-STITPVAVFKPVELEGTTV 335

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+L N    + L    K          G R+ V +A ++IPKV++I           F
Sbjct: 336 QRASLCNVSECERLGIGDK----------GTRLQVIKANKIIPKVINI-----TEVVGSF 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C +  V   +    K      CT   AC A+QL++   FVS++  NI+G+ +
Sbjct: 381 VIPAECPVCHAPAVVRESESGTKT---LHCTNA-ACPAKQLKKFARFVSKEGINIDGISE 436

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           Q +  F         I   AD + L+        +I    GFG  SV+NL +S+ K R+ 
Sbjct: 437 QTVWKFINH----GFISEYADFYKLKNYAF----EISCFEGFGKKSVSNLLESVEKSRHT 488

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
                +++L I   G ++A+ L   Y       + I        DD      +  +G   
Sbjct: 489 DGRHLLYALNIPLCGGDVAKKLLSRY----KVKELIETARLSMFDD--EFASIDGIGPEK 542

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQ 667
           +   + ++++  +   V+ LL E+     +      ++ +    V TG +   + R++ +
Sbjct: 543 SAKFIAWFKDDVHFLHVQHLLSELIIE-EQEPVETGNKCQGLTFVVTGDVHHYKNRNELK 601

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            Y+   G  V+  +S+ T+ +I  D     SK +KA +L + I+ E++F+   Q+
Sbjct: 602 AYIESQGGKVTGSVSKSTNFLINNDAASQSSKNKKAHELNIPIITEDEFIEKFQE 656


>gi|217032016|ref|ZP_03437517.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128]
 gi|216946326|gb|EEC24932.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128]
          Length = 458

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 160/490 (32%), Positives = 246/490 (50%), Gaps = 36/490 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++  + ++ L   +S+H   YY    PI+ D+ YD L +   A     P+  ++   N
Sbjct: 4   SQKEYLERIAYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---N 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+G     S  K +H +   SL+ ++N  +L+ ++ RI + +      S  F   P
Sbjct: 57  SPTQKVGAITTNSFNKNSHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSP 111

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y+ GK V A  RG+G  GE V+   + I  IP  ++ +    IE+RGEV 
Sbjct: 112 KLDGVSLNLLYQHGKLVKATTRGNGLEGELVTNNAKHIANIPHFIAYD--GEIEIRGEVI 169

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           ISK DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK S  F 
Sbjct: 170 ISKKDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFL 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E L  +  LGF     +        I   Y+ +   R      +DG+V  VDE  +
Sbjct: 230 -SFKECLDFIVSLGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVDELDI 288

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           QK+LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA+I  A
Sbjct: 289 QKELGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMINRA 348

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   I+            ++I + DRV+V R+G+VIPK++  + + R         P
Sbjct: 349 TLHNYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERP 397

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPIC   ++ +             C   L C A+  E L HF S+DA NI+GLG + +
Sbjct: 398 KVCPICSHELLCEE--------IFTYCQN-LNCPARLKESLIHFASKDALNIQGLGDKVI 448

Query: 492 DFFFKSEDPA 501
           +  F+ +   
Sbjct: 449 EQLFEEKLHC 458


>gi|289759140|ref|ZP_06518518.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium
           tuberculosis T85]
 gi|289714704|gb|EFD78716.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium
           tuberculosis T85]
          Length = 449

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 137/463 (29%), Positives = 223/463 (48%), Gaps = 30/463 (6%)

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           R  G P        N   G+    +     R  + ++IDG+V KVDE +LQ++LG  +R+
Sbjct: 15  RAWGLPGFRTHHPGNRPAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGFTSRA 74

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  ATLHN   IK 
Sbjct: 75  PRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKR 134

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      + + +GD V++++AG+VIP+V+  +V  R    + F  P+ CP C S +
Sbjct: 135 -----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPL 183

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
                    +  A  RC     C  Q  ER+ H  SR+  +IE LG +      +++   
Sbjct: 184 -----APEKEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK--- 235

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I    ++F L  R    T       G    +   L  +++K +   L R + +L IRH
Sbjct: 236 -VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRH 294

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   AR+LA  + S    A    + +A           V  VG  IA A+ E++    +
Sbjct: 295 VGPTAARALATEFGSLDAIAAASTDQLAA----------VEGVGPTIAAAVTEWFAVDWH 344

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              V+         +   +++V   +    +V TG+L    R  A+E +   G   +  +
Sbjct: 345 REIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSV 404

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL     +
Sbjct: 405 SKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADGPAS 447


>gi|257793742|ref|ZP_05642721.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
 gi|257787714|gb|EEV26054.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
          Length = 425

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 157/463 (33%), Positives = 247/463 (53%), Gaps = 42/463 (9%)

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G   +SPRW
Sbjct: 1   GFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRW 60

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED I     
Sbjct: 61  AIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHD--- 117

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C   +VR 
Sbjct: 118 --------RDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCGHELVRI 169

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                     A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE     I
Sbjct: 170 EGE------VALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE----LI 218

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           +  ADIF L         ++          V NL  +I + ++ SLE  +F LGIRH+G 
Sbjct: 219 KDVADIFYLTEEDLLPLDRMGQ------KKVDNLLAAIQQAKDNSLENLLFGLGIRHLGV 272

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
           + ++ LA+ Y +           +          + +  +GD +AQ++V + +N      
Sbjct: 273 KASQVLAEKYETIDRLLTVTEAEL----------VEIHDIGDKVAQSVVTYLENEDIRAL 322

Query: 625 V----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           +    +  +  +   I   +     E   K +V TG L ++ R++A +++   GA V++ 
Sbjct: 323 IQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQGAKVTSS 382

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 383 VTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 425


>gi|315924259|ref|ZP_07920483.1| NAD-dependent DNA ligase LigA [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622420|gb|EFV02377.1| NAD-dependent DNA ligase LigA [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 654

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 175/714 (24%), Positives = 306/714 (42%), Gaps = 72/714 (10%)

Query: 12  LSIEQ--ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +++ +    ++++ L  +I+   + YY   + ++ + E+DAL      +       A   
Sbjct: 1   MTMAELSINQQMADLIGKINAASEAYYGGREELMSNYEWDALFDALIRLEKK----AGYA 56

Query: 70  DPNGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P  ++G   +  S  KV H  P LSL K   + DL K+                  
Sbjct: 57  LPDSPTQRVGTSSSEASGEKVAHEYPMLSLAKTKTVADLVKWADGR------------DV 104

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            L  K+DG  +   Y++G+      RG+G  G D++    AI  +P  +S   P  + +R
Sbjct: 105 WLSLKLDGLTLVATYDEGRLNRLVTRGNGSVGTDITHLASAIDGVPIQISE--PGHLVIR 162

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GE  I+  DF    +  +    + YANPRN ASG L   +  ++ R  L +    L    
Sbjct: 163 GEALITYKDF----ETFLLESEETYANPRNLASGSLSLKDIDEVRRRHLQWIPFTLVHLD 218

Query: 248 EIFAKGQYEMLQKMRCLG-FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                     +  +  LG  PV     QA+T    ++ ++E  S    +PY +DGLV   
Sbjct: 219 REMI-SWGARMDYLASLGFHPVERERLQADTLGDGIARWSEQISK-GAIPYPVDGLVMTY 276

Query: 307 DEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           D+    +          R  ++ K+ +  A + L  I+        +TPVA  EPV + G
Sbjct: 277 DDTDYAQTGSVTGHHATRAGLAFKWQDTSADSILTGIEWSCAA-STITPVAIFEPVALEG 335

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++  A+LHN    + L   G           G +V V +A ++IPKV+           
Sbjct: 336 TIVKRASLHNISECRRLGIGGA----------GTKVTVIKANKIIPKVIA------AKGE 379

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F  P  CP+C +     ++    +      C+    C+A+ L++   FVSR   +I+G
Sbjct: 380 GNFVIPEACPVCSAPTAVAVSSSGAET---LHCSNP-ECAAKHLQKFNRFVSRYGMDIDG 435

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           L  Q ++ F         I+  +DI+ L +        I  + GFG+ SV NL  +I K 
Sbjct: 436 LSIQTMNKFINQ----GFIKSFSDIYQLAKYFDA----IREMDGFGEKSVANLAAAIEKS 487

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R +  E  +F+L I  +G +  + L             +N + A+ + D      +  +G
Sbjct: 488 RRVKPENLLFALCIPMIGVDAGKRLINAIG----LEGVLNRLNANEDFD-----DIEGIG 538

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRH 664
              + +++ +Y + +N   +  LL E+   +   ++N S   E    V TG +Q    R 
Sbjct: 539 PEKSDSLLAWYADEKNASDLTRLLAELQVDMEAKQRN-SGRCEGLTFVITGKVQHYQNRD 597

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716
             + YV   G  VS  +S+KTD ++    ++  +K  +A+ LGV I++E +F+ 
Sbjct: 598 AFKAYVESQGGHVSGSVSKKTDYLVNNDVESTSAKNRRARDLGVPIISEAEFVE 651


>gi|284047072|ref|YP_003397412.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
 gi|283951293|gb|ADB54037.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
          Length = 670

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 182/723 (25%), Positives = 312/723 (43%), Gaps = 78/723 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++  +L  +I +H   Y     P ++D++YDAL+    A+  A P++      + PL++ 
Sbjct: 7   EQARALAAQIDHHRGLY-ARGAPALVDADYDALEDELRALLAASPEVVLD---DNPLDRP 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
                +    + HS P LSLEK    E L  F  R              F + PK+DG  
Sbjct: 63  WAPELVPGQTIRHSRPMLSLEKATTAEQLDAFCAR---------FPGQAFRVTPKLDGIS 113

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIR-AIPTIPRVLSLNIPEIIEVRGEVYISKND 197
           I I Y+ G+  Y A RGDG  GE V+   R  +  +P  L+L     +EVRGE  +  + 
Sbjct: 114 IAIVYQDGELEYVATRGDGRDGERVTDKARLVVLGLP--LTLGAAGRVEVRGEAVMLDSI 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI---TRYLNFFVHGLGKTSEIFAKGQ 254
           + A ND   A   +P  NPR+AA+G     +P       R L FF   L +         
Sbjct: 172 WRAYND---AHPDRPLTNPRSAAAGTFVVKSPEACVAEGRTLRFFAFDLDEAEV----SD 224

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            ++ +++  LGF V   V  A       +   ++ + R    + IDG V ++      + 
Sbjct: 225 GDVSERLVALGFEV-PDVLPAADAEQARAAIEQVAARRGEYDFGIDGAVVRLASRRAFEA 283

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
            G  + +PR  ++ K+  ++ +T L  +   +G+ G + P A+++PV +GG  +T A+LH
Sbjct: 284 AGATSSAPRGALAWKYPAEERTTVLRAVTWPVGKIGRVVPRAQVDPVFVGGTTVTFASLH 343

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   ++            RDIR+GD V + R G+VIP +   +V +R  D      P+ C
Sbjct: 344 NPRLVR-----------ERDIRIGDTVRIMRRGDVIPFIAGSVVEQRTGDEVEIELPTHC 392

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +V     +             L C AQ + RL H+ SR A ++EG+G   ++  
Sbjct: 393 PSCGTELVVRGTGEEL-------WCENLQCPAQAVRRLIHWSSRHASDMEGVGNTWIEKL 445

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +  P+D + L   Q     ++      G+VS   +  SI++ R + L R +
Sbjct: 446 AED----GVLERPSDFYALTVEQLVGYERM------GEVSANAMVASIDRSRGVGLRRAL 495

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             L I      +A+ L           + I  I+    ++  +   +  +G  +A ++V 
Sbjct: 496 IGLAIPMASEGVAKRLCLAGF------ERIEEIVERTAEELEA---IRDIGPKVAASMVA 546

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKN-------VSSEIENKKLVFTGTLQKIQ----- 662
           ++  P     + AL         R E           + ++   +V TG           
Sbjct: 547 YFARPEVQEELCALRAAGVDLDVRDEDRPIEVADAAETPLKGATVVVTGAFADPDSGAKV 606

Query: 663 -RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R      + Q GA   + +S  T ++I G N G +K +KA +LGV+++++EQ    L +
Sbjct: 607 ARPAVVRLLEQAGATSVSSVSATTTMLIAGSNVGAAKTDKAARLGVQVVDQEQAWDWLAE 666

Query: 721 YNT 723
              
Sbjct: 667 AGV 669


>gi|307565636|ref|ZP_07628114.1| NAD-dependent DNA ligase domain protein [Prevotella amnii CRIS
           21A-A]
 gi|307345668|gb|EFN91027.1| NAD-dependent DNA ligase domain protein [Prevotella amnii CRIS
           21A-A]
          Length = 676

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 175/727 (24%), Positives = 303/727 (41%), Gaps = 72/727 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  RK +  L   ++   D YY     I+ D E+DA       I      +     P+ 
Sbjct: 2   AENKRKRMEELVLCLNNASDAYYNGKGEIMTDFEWDAAFDELKKIEKELGIIL----PSS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P N +  +      K  H  P LSL K  + E L K+                   L  K
Sbjct: 58  PTNNVSADNITG-KKEEHEYPALSLAKTKSEEVLVKWAANR------------PIWLSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  + + Y++GK      RG+GH G +++    AI  I   +  N  E + +RGE  I
Sbjct: 105 LDGLTLVVTYDEGKLTKVVTRGNGHIGTNITHLASAIKGILPTI--NTKEHLVIRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
           S  DF   N E        YANPRN ASG L   +  ++ +R+L +    L         
Sbjct: 163 SYADFEIFNMESEEE----YANPRNLASGSLTLKDINEVKSRHLQWKPFTLVHCDRTII- 217

Query: 253 GQYEMLQKMRCLGFPVNNGVRQA----NTFHGIVSYYNEMKS---IRSTLPYDIDGLVYK 305
              E +  +  LGF        A         +++ + +  +    +   PY +DGLV  
Sbjct: 218 SWGERMSFLDSLGFNTVEREFIAIPSIKNIEDVIAAWTQRVTDSARKDKQPYPVDGLVIT 277

Query: 306 VDEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
            D+               R  ++ K+ ++   T L  I+     T  ++PVA   PV I 
Sbjct: 278 YDDTDYAATGSVTGHHATRAGLAFKWQDESMETELKFIEWSCA-TSTISPVAVFAPVEIE 336

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++  A+L N    + L               G +++V +A ++IPKV+ +  ++R   
Sbjct: 337 GTIVKRASLCNISECERLGIGDA----------GTKIMVIKANKIIPKVICV--SKRIGS 384

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              F  PS CP+CQ       N K+G       CT    C A+QL++L  FVS++  NI+
Sbjct: 385 ---FLIPSVCPVCQCPTEIVENEKSGTRT--LHCTNHY-CPAKQLKKLARFVSKEGVNID 438

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GL +Q +  F         ++  +DIF      +    +++ I GFG  S  NL+ +I K
Sbjct: 439 GLSEQTMQKFIN----LGWVKEYSDIFQ----LKKKEKELKQIDGFGTKSCENLFSAIEK 490

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA--------HNNDDWL 596
            R +  ++ +++L I  +G ++   L   Y   +  +      IA           D   
Sbjct: 491 SRIVEAKQLLYALSIPLIGKDVCNRLLSTYSLEELISMSRPTTIASQQLLFNEAYADTET 550

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
               +  +G   + + V + ++  N   ++ LL+E++      E    S  +    V TG
Sbjct: 551 IFSTIAGIGPEKSTSFVRWMRDENNYTQLQHLLQELTIKQTTTEIKGKS-CKGLTFVITG 609

Query: 657 TLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQ 713
            +   + R++ + Y+   G  V+  +S+ T+ +I    ++  +K +KA++L + I++E+ 
Sbjct: 610 DVYHYKNRNELKAYIESEGGKVTGSVSKNTNYLINNDTESISNKNKKAKELNIPIISEDD 669

Query: 714 FLFLLQQ 720
           F+ L  +
Sbjct: 670 FISLFNK 676


>gi|189490484|ref|YP_001957054.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
 gi|164609549|gb|ABY63158.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
          Length = 695

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 181/713 (25%), Positives = 312/713 (43%), Gaps = 52/713 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E   L + I +++  YY     II DS YD L      +    P+       + P   
Sbjct: 4   RHEYDVLCKRIRHYNYMYYVLDISIIPDSLYDQLLISLKLLEKEHPEWVTR---DSPTQT 60

Query: 78  IGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKID 135
           +G  +  S    V    P LSL+ ++  ++   +   I+   +  K D S     E K+D
Sbjct: 61  VGHPVYESHFELVKRVKPMLSLDNLFTCDEAVDWSIDIHGDIYVGKKDESAEIVAEWKMD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y       A+ RGDG +GEDV+     +  IPRVL       + +RGEV +  
Sbjct: 121 GLSLDVNYTYDTMELASTRGDGTTGEDVTPNAMVVEGIPRVLKTPRHGGVSIRGEVVVRL 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
            D+  +N ++ A G+K +ANPRN A+G LR+ +P     R L F  + + +T        
Sbjct: 181 ADYNQINADLEAAGKKTFANPRNYAAGSLRQKDPRITRERKLVFVAYSVERTLGDPEATW 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFH-----GIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           Y+    ++  GF   +  ++ +        G  +   E ++ RS+ P+++DG+V+KV + 
Sbjct: 241 YDDQAWLKENGFYTADTGKRLSHDQRGMTSGFPALIAECQAERSSYPFEVDGIVFKVVKH 300

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + ++ LG  +R PRW  ++KF   +  TRL+ +D Q+GRTG LTP+AR+EP+++ G  I+
Sbjct: 301 THRETLGYTSRFPRWGRAYKFPASKGETRLISVDRQVGRTGKLTPMARIEPIHVHGTTIS 360

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           N T+HN   ++              +  G  V + RAG+VIP +   I +  H   + + 
Sbjct: 361 NVTIHNLKELE-----------QHKLFEGCYVEISRAGDVIPYLERRITD--HNGEKLYG 407

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHR---CTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               CP C ++VV     KT +     R   C     C  +Q+  L +   R   NI+GL
Sbjct: 408 EVEACPCCGTKVVVVHGKKTKENPEGSRTEYCPNT-KCKDRQVAHLLYCTQRHVLNIKGL 466

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +   + +      +  P  +  L+        KI       +     +  +     
Sbjct: 467 GDELVMDLYNAGVV--DVTRPLSLLMLKHEDFL---KIGQSERMAEKLAMAVTIA---SA 518

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           N+ L R I +LGI       A  LA+   + +  +    + +          + +  +GD
Sbjct: 519 NLDLTRVITALGISGAADGTAERLAREIRTLEEISIATIDRM----------LEIDDIGD 568

Query: 607 IIAQAIVEFYQNPRNICAVE-ALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGT-LQKIQR 663
           + AQ+I EF+         + A    V     +  + + +        V TG+      R
Sbjct: 569 VTAQSIFEFFDEDNRKPHGQSAWRPYVGDRYLKAPEPLGTLFRPGTTFVVTGSKFGDKAR 628

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK--IMNEEQ 713
              + +  Q GA VS+ +++ T  +  G    + KL  A++LG+   I NE+ 
Sbjct: 629 KDLERWFKQNGATVSSTVTKSTTTVYCGTKYTAHKLATAKELGIPYVIYNEDG 681


>gi|215447287|ref|ZP_03434039.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T85]
          Length = 416

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 132/442 (29%), Positives = 217/442 (49%), Gaps = 30/442 (6%)

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
              +     R  + ++IDG+V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI
Sbjct: 3   ERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGFTSRAPRWAIAYKYPPEEAQTKLLDI 62

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
            + +GRTG +TP A + PV + G+ +  ATLHN   IK            + + +GD V+
Sbjct: 63  RVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKR-----------KGVLIGDTVV 111

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           +++AG+VIP+V+  +V  R    + F  P+ CP C S +         +  A  RC    
Sbjct: 112 IRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPL-----APEKEGDADIRCPNAR 166

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522
            C  Q  ER+ H  SR+  +IE LG +      +++     I    ++F L  R    T 
Sbjct: 167 GCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTD 222

Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
                 G    +   L  +++K +   L R + +L IRHVG   AR+LA  + S    A 
Sbjct: 223 LFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAA 282

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
              + +A           V  VG  IA A+ E++    +   V+         +   +++
Sbjct: 283 ASTDQLAA----------VEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDES 332

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
           V   +    +V TG+L    R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA 
Sbjct: 333 VPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAV 392

Query: 703 QLGVKIMNEEQFLFLLQQYNTT 724
           +LGV I++E+ F  LL     +
Sbjct: 393 ELGVPILDEDGFRRLLADGPAS 414


>gi|303237245|ref|ZP_07323815.1| NAD-dependent DNA ligase domain protein [Prevotella disiens
           FB035-09AN]
 gi|302482632|gb|EFL45657.1| NAD-dependent DNA ligase domain protein [Prevotella disiens
           FB035-09AN]
          Length = 655

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 166/702 (23%), Positives = 288/702 (41%), Gaps = 64/702 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L  +++   + YY     I+ D E+DA       +     +   +  P+ P   +  
Sbjct: 9   MRELVDKLNEASNTYYNGQNEIMSDHEWDAAFDELKHLE----EETGTILPDSPTANVSA 64

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +      K  H    LSL K     DL K+                   +  K+DG  + 
Sbjct: 65  DSIAG-EKEEHEFAALSLAKTKKTTDLLKWAE------------EKPIWISWKLDGLTLV 111

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y+KGK      RG+GH G +++    AI  I   ++      + +RGE  IS +DF  
Sbjct: 112 VTYDKGKLSKVVTRGNGHIGTNITHLAPAIAGILPTITDK--GHVVIRGEAIISYSDFNV 169

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
            N E        YANPRN ASG L   N   +  R+L++    L  + E F       + 
Sbjct: 170 FNMETGEE----YANPRNLASGSLTLKNIETLKERHLHWIPFTLVYSDEPF-NSWGAQMD 224

Query: 260 KMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            +  LGF               I +         ++  Y +DGLV   D+ +        
Sbjct: 225 YLTKLGFKTVEHEAINVPNIENIDATIENWTHKLNSFDYPVDGLVICFDDIAYATTGSVT 284

Query: 319 ARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
                R   + K+ ++ A T L  I+        ++PVA  +PV + G  +  A+L N  
Sbjct: 285 GHHATRGGYAFKWQDESAETELEYIEWSCAA-STISPVAVFKPVELEGTTVKRASLCNIS 343

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
             + L   GK          G ++ V +A ++IPKV++++           S P+ CP+C
Sbjct: 344 ECERLGIGGK----------GTKISVIKANKIIPKVIEVL-----QTEGKLSIPTECPVC 388

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S    ++   +        CT    C+A++L++   FVS++  NI+GL +Q L  F   
Sbjct: 389 KSPT--EVVVSSSSETKTLHCTNP-NCAAKELKKFVRFVSKEGVNIDGLSEQTLQKFIN- 444

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   ADIF L          ++ + GFGD SV NL  +I+K + +  +  +FSL
Sbjct: 445 ---LGWINQYADIFHLHEH----ANDLKIMEGFGDKSVLNLLRAIDKAKIVEAKNLLFSL 497

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  VG ++   L   Y   +   +      A    D      +  +G   + + + + Q
Sbjct: 498 SIPLVGQDVCSRLLSAYPFNELIMK------ARLATDSAEFSNIAGIGPEKSASFIAWIQ 551

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAV 676
              NI  +  LL E+  +    ++ + +       V TG +   + R + + Y+   G  
Sbjct: 552 AEENIKRLNNLLVELKITQPVVKE-IGTRCNGLTFVVTGDVHHYKNRSELKAYIESQGGK 610

Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
           V+  +S+ T+ +I  D  +   K +KA+Q  + I++E++F+ 
Sbjct: 611 VTGSVSKSTNYLINNDVNSTSEKNKKARQFEIPIISEDEFVE 652


>gi|37788926|gb|AAO65604.1| hypothetical NAD-dependent DNA ligase [Candidatus Phytoplasma
           solani]
          Length = 495

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 173/533 (32%), Positives = 282/533 (52%), Gaps = 41/533 (7%)

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           +S   F  LN +     + P+ANPRNAASG LR+LN   +  R L+ F++ +  +  +  
Sbjct: 1   LSYPAFEKLNQKQKENNKTPFANPRNAASGTLRQLNSKIVAQRNLSIFIYNIA-SPYLIK 59

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   L+ +  LGF VN     A TF  ++      K I+ T PYD DG+V KV+E +L
Sbjct: 60  PTQLASLEFLIQLGFTVNPHYNLALTFEDLLVKIQNYKVIKDTQPYDTDGVVIKVNELAL 119

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
              +G  +++P+W I++KF  K + + + DI  Q+GRTG++TP+ ++ PV + G+LI+  
Sbjct: 120 HALIGATSKAPKWAIAYKFPAKTSQSIVTDIIFQLGRTGMITPICQIMPVLVDGSLISKV 179

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
            LHN D+I             +DIR+GD V V +AG VIP++++++ ++R  + +     
Sbjct: 180 VLHNYDFI-----------SKKDIRIGDCVTVHKAGSVIPEILEVVASKRT-NQKKTMMI 227

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C+S +V+            + C     C  Q+++RL HFVS+ A +I  LG++ +
Sbjct: 228 LQCPYCKSNLVKKEGK------VDYFCLND-DCYWQKIQRLIHFVSKKAMDINVLGEKTI 280

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              F        I+ P+D++ L     T    ++ +  FG   + N+  +I + +   LE
Sbjct: 281 ITLFNQH----LIQKPSDLYLL----HTHLNILQTLPSFGQKKINNILKAIEQSKTKPLE 332

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F LGI+HVG +I++ L K  LS +  A      +            +P +GD IA++
Sbjct: 333 RVLFGLGIKHVGEKISQVLVKNNLSLEKLATIKLEALTA----------IPEIGDKIAKS 382

Query: 612 IVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+ NPRNI  ++ L +      +         +   +KK+V TGTLQ   R +  + 
Sbjct: 383 INIFFNNPRNIAEIQKLQQLGVSFQNTINQTVVKKTFFSDKKIVLTGTLQNYTRLELTQI 442

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + Q+GA +S+ LS KTD +I G N GSKL KAQ+L + I+ E Q    ++Q +
Sbjct: 443 LKQMGANISSSLSAKTDFLIAGTNAGSKLTKAQKLKISIIEEAQLEKWIKQTD 495


>gi|302562478|ref|ZP_07314820.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
 gi|302480096|gb|EFL43189.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
          Length = 533

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 170/559 (30%), Positives = 261/559 (46%), Gaps = 54/559 (9%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
                YY      + D  YD L R         PD      P  P  K+ G        V
Sbjct: 17  RAAAAYYGGGTSALDDDAYDRLVRGIADWEAEHPDAIL---PGSPTGKVAGGAVEG--DV 71

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H++P LSL+ +++ E+   +   + R   +   ++  F++ PK+DG  +  RY  G+  
Sbjct: 72  PHTVPMLSLDNVFSAEEFTAWTASLAR---RIGHDAARFSVGPKLDGLAVAARYSDGRLT 128

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
               RGDG +GEDVS  I  +  +P  L    P  +EVRGEV ++   F   N+   A G
Sbjct: 129 RLITRGDGTAGEDVSHAIGTVEGLPEKLEE--PVTVEVRGEVLMTTAQFEHANEVRTAHG 186

Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK--------GQYEMLQKM 261
            +P+ANPRNAA+G LR  +    T  + FF +GL                    E++   
Sbjct: 187 GQPFANPRNAAAGTLRARD-RVYTVPMTFFGYGLLPLPGTDPALAGRLDDLPHSELMALA 245

Query: 262 RCLGFPVNNGVRQAN----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           R LG   +      +    T   +++   E+ + R+ LP+ IDG+V K D    Q+  G 
Sbjct: 246 RDLGVHTSARTAVPDVVAGTVEEVLARVKEIAAARAELPFGIDGIVIKADLAEEQRAAGS 305

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW I++K    +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN  
Sbjct: 306 GSRAPRWAIAYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIDGSTITYATLHNPA 365

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I             RD+R+GD V+V RAG+VIP++   + + R  + QP  FP+ CP C
Sbjct: 366 DITR-----------RDLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPAQCPRC 414

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +               RC  G  C    +  L +   RD  +IEGLG  ++      
Sbjct: 415 GSDI--------DTGEERWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGATRVVQLVD- 463

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   AD+F L+R Q  +  ++      G+ S  NL  ++ K +   L R + +L
Sbjct: 464 ---AGLVADLADLFALRREQLLALERM------GETSTDNLLAALAKAKEQPLSRVLCAL 514

Query: 558 GIRHVGAEIARSLAKYYLS 576
           G+R  G  ++R +A+Y+ +
Sbjct: 515 GVRGTGRSMSRRIARYFAT 533


>gi|57168176|ref|ZP_00367315.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
 gi|57020550|gb|EAL57219.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
          Length = 467

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 157/483 (32%), Positives = 251/483 (51%), Gaps = 36/483 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +KE        +     YY+  +P+  D EYDAL R          D       + P  K
Sbjct: 3   KKEYLEKVALAASWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAR--------CEENFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y+KG+ V  A RGDG  GED++  +  I  IP+ +  N  E IE+RGEV I K+D
Sbjct: 112 SLNLLYDKGRLVSGATRGDGEIGEDITLNVLEIDNIPKTI--NYKEKIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F K   E
Sbjct: 170 FEKINEKRARLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTK-HSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ ++       ++  YNE+ S+R   P  +DG+V +VD+ +L K+LG
Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYNELLSLRDKKPMMMDGMVVRVDDLALCKELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 HTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L            + + D V V R+G+VIPK+  +    R+        P+ CP 
Sbjct: 349 DEIARL-----------GVCINDEVSVIRSGDVIPKITKVFKI-RNNLRTKIIKPTVCPE 396

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++           A  +C   L C A+ +  + HFVS+   NI+GLG+  ++  FK
Sbjct: 397 CLSELL--------DEGAFLKCQN-LDCKARLVNSIIHFVSKKCLNIDGLGENIVELLFK 447

Query: 497 SED 499
            + 
Sbjct: 448 EKK 450


>gi|219882959|ref|YP_002478123.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
 gi|254778150|sp|B8HIQ9|DNLJ2_ARTCA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|219861965|gb|ACL42306.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
          Length = 701

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/712 (25%), Positives = 308/712 (43%), Gaps = 79/712 (11%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
               Y       + D+E+D L  +  +   A        +P   L+   G        V 
Sbjct: 50  AAKAYETTDVEEMNDAEFDRLLAKIASHEAANG-----IEPEHDLHDTIGHGGAGGGDVE 104

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H+ P  SLEK    + + +F  +  +             +EPKIDG  I++RYE GK V 
Sbjct: 105 HATPMKSLEKP-GEDAVIEFAAKHPKA-----------VIEPKIDGLAISVRYENGKMVR 152

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
           AA RGDG++GEDV+  +R +  +P +         EVRGE+Y++  +    N    A G+
Sbjct: 153 AARRGDGYTGEDVTDRVRGVDGLPEMAGDG---DYEVRGELYLNDENKAKANAIRQAAGK 209

Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
            P+AN RN  +G+L + + +    Y   F      T+        + +Q++  +GF    
Sbjct: 210 APFANARNGVAGMLNKQDGS----YAGLFSFAAYSTTIDEKADHLDSMQQLEGMGFTTAR 265

Query: 271 --GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
               +        ++    + + R  L + +DG V KV+  + + +LGE +R+P+W +++
Sbjct: 266 SLLPQSVLDAEDPMAAIAALGAERKGLNFLMDGAVLKVNTAAERAELGEGSRAPKWAVAY 325

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K+   +  T + DI+  IG+TG L+  ARL PV + G+++  A+LHN  +++        
Sbjct: 326 KYPAVEEPTVIEDIEYNIGKTGRLSIRARLTPVEVDGSVVEYASLHNVGHLQA------- 378

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
                D+R+GD V   +A ++IP+V     + R   +QP+  PS CP C        +  
Sbjct: 379 ----ADMRIGDTVSAYKANDIIPQVHLPRADLRDESSQPWQPPSVCPQC--------SEP 426

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDA-FNIEGLGKQQLDFFFKSEDPAFSIRIP 507
             K     RC     CS     R+ +  SRDA  +IEGLG    D   + +     ++  
Sbjct: 427 FDKSTELWRCH-TPECS--VSGRISYAASRDAGLDIEGLGGSIGDALIEKD----LVKDV 479

Query: 508 ADIFTLQRRQQTSTTKIENILG----FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           +D+F L   Q       E   G     G  +   +   I K ++  L R I +L +R  G
Sbjct: 480 SDLFYLGEDQLAEVELGETSTGGTRTLGQKNAAKIMAEIEKAKSQPLNRVITALSMRFTG 539

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI- 622
               R LA  + + +       + +A           V  +G   A+ I E  +    + 
Sbjct: 540 RTFGRRLAAEFGTMEALQAATVSQLA----------NVEGIGQKKAEVIHEQLKKNAPVI 589

Query: 623 -CAVEALLKEVSPSIGRHEKNVSSEI-----ENKKLVFTGT-----LQKIQRHKAQEYVT 671
               EA +   +P         + ++     +   +V TG+     L  + R   QE + 
Sbjct: 590 AKLREAGVNMGAPKAAPAAGAKAPKLTKPDGKPMNVVVTGSVKGSPLGSLSRSGVQELIE 649

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             G   S  +S+ TD+++ G+   SK  KAQ+LG++I+  ++F  +++    
Sbjct: 650 AKGGKASGSVSKTTDLLVCGEPGSSKFLKAQELGIRIVTPDEFAQMVEDGEV 701


>gi|330722364|gb|EGH00218.1| DNA ligase [gamma proteobacterium IMCC2047]
          Length = 394

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/418 (38%), Positives = 241/418 (57%), Gaps = 38/418 (9%)

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + Y+IDG+V+K++   LQ ++G  +R+PRW I++KF  ++  T+LL ++ Q+GRTG +TP
Sbjct: 1   MHYEIDGIVFKLNSLELQNKVGFVSRAPRWAIAYKFPAQEEITQLLGVEFQVGRTGAVTP 60

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG  ++NATLHN D I+ L            +R GD V+V+RAG+VIP+VV
Sbjct: 61  VARLQPVFVGGVTVSNATLHNGDEIERL-----------GVRCGDTVVVRRAGDVIPQVV 109

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            +++ +R  ++    FPS CP+C S V+R          A  RCTGGL C+AQ+ + +KH
Sbjct: 110 QVVLEKRPENSTAIEFPSSCPVCGSDVIRAEGE------AVARCTGGLYCAAQRKQAIKH 163

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F SR AF+IEGLG + +D     +     I   AD+F LQ    ++  ++      GD S
Sbjct: 164 FASRKAFDIEGLGDKLVDMLVDQQ----LINSIADLFHLQHEALSNLERM------GDKS 213

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL D++ K +  +L RFI++LGIR VG   A +LA ++       Q            
Sbjct: 214 AQNLLDALQKSKQTTLARFIYALGIREVGEATAANLAHHFADLGALMQAKEE-------- 265

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLV 653
              L+ V  VG I+A  I  F+Q P N   +EALL E        +KNV +  +  +  V
Sbjct: 266 --QLLEVNDVGPIVASHIAHFFQQPHNQEIIEALLAEGIRWPSVDKKNVEAMPLAGQTWV 323

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            TGTL+ + R +A+  +  LGA VS  +S KT  ++ G + GSKL KA+ LG+++ +E
Sbjct: 324 LTGTLETLTRDQAKSRLVALGAKVSGSVSAKTHCVVAGASAGSKLTKAESLGIEVRDE 381


>gi|111226523|ref|XP_001134548.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
 gi|90970627|gb|EAS66865.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
          Length = 843

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 190/807 (23%), Positives = 346/807 (42%), Gaps = 154/807 (19%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  +I+ ++D YY  SK  I D EYD L +R + +   F             N++G  ++
Sbjct: 71  LRNKINRYNDLYYNKSKSEISDFEYDKLFKRLEILEKKFNQQTI-------TNQVGAPIS 123

Query: 84  L----SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-------IFFTLEP 132
                   K  H    LSL+  ++ +D+  F  +I +F  KK  +        I ++LE 
Sbjct: 124 DYSNNRGLKFRHKSRMLSLQNTYSKDDIIAFKNKIEKFLLKKQTSQQQQPQQQIEYSLEL 183

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACI-RAIPTIPRVLSLNIPEI------- 184
           K DG  I++ YE  K      RG+G  GED++    + IP++  +L+L            
Sbjct: 184 KYDGIGISLVYENNKLKRVLTRGNGEIGEDITTNALQFIPSLKNLLTLPSNLTVFILFLI 243

Query: 185 -----IEVRGEVYISKNDFLALND-EMIAVGRKPYANPRNAASGILRRLNPTDITRYLN- 237
                 E+RGEV ++K+    +N  ++    +  Y N RN  SGILR+    D    LN 
Sbjct: 244 LKYKDFEIRGEVVLNKSYLKIINKLKLDNNDQHQYKNTRNIVSGILRKSIEEDANDSLNI 303

Query: 238 -------------FFVHGLGKT----------------------------SEIFAKGQYE 256
                        FF +    T                             +     Q +
Sbjct: 304 EPILLLNEQMKFDFFPYFFIPTNNNNNNINNGENENENDNEKENDNEMIIDDERCNTQSK 363

Query: 257 MLQKMRCLGFPVNNGVRQA-----------NTFHGIVSYYNEMK-SIRSTLPYDIDGLVY 304
            L+    +GF ++NG               N    I  +  E +   R    +DIDG+V 
Sbjct: 364 NLKLFEKMGFQIDNGSNTVVTLSTGGGGNNNDIKNIEEFIKEWELKKRENHNWDIDGIVI 423

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ ++Q+ LG+  RSPRW  ++KF  K   + + DI +Q+G++G +TPVA +EP+ + 
Sbjct: 424 KVNDINIQRILGDINRSPRWAFAYKFGAKSEISTIKDIVLQVGKSGRITPVALVEPIQVH 483

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  I+ ATL+N  YI  L+           I++G +VL++RAG+VIPK++  + +  +  
Sbjct: 484 GVTISRATLNNLSYINKLN-----------IKIGSKVLIERAGDVIPKIITNLDDNINNT 532

Query: 425 AQPFSFPSF--------CPI-----CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
               +  +         C       C   +  +L  + G     + C     C  Q +++
Sbjct: 533 NTNTNTNNTNNIESLFKCNENGNILCPCNLKSELVNRVG--YVDYFCVAE-NCPNQLVQQ 589

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           +  FV + A NI+G+GK Q+    +++     I    D++ L + +     K+ ++ GF 
Sbjct: 590 ISWFVDKKAMNIQGVGKSQIQVLLENQ----LIEDFGDLYELYQFK----EKLLSLKGFS 641

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
              V NL +SI   ++  L   + ++GI  +G+  ++ L++ + S  N           N
Sbjct: 642 HTKVNNLLESIEDSKSRGLASLLCAIGIPGIGSSNSKILSEKFQSLDNL---------IN 692

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQ----------------------NPRNICAVEALL 629
           +    S+     +G   +++I  F+                          +    +   
Sbjct: 693 SPSIESIELQSGLGRQTSESIFNFFNPLDQFEKQYLDYLIFKFKSNNLKLTHNNNNDNNE 752

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT-QLGAVVSAILSRKTDII 688
           +  + +   + +N +S + NK +V TG  +   R   ++++  +  A V + ++  T I+
Sbjct: 753 EIGNNNNNNNNENNNSFLSNKYIVITGKFKLGDRDFVKDFIQRKFNAKVQSSINSFTQIL 812

Query: 689 IVGDNPG-SKLEKAQQLGVKIMNEEQF 714
           ++G+ P  +KL KA +LG++I +E + 
Sbjct: 813 LIGEKPAIAKLNKANELGIQIKSENEL 839


>gi|257458169|ref|ZP_05623323.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580]
 gi|257444463|gb|EEV19552.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580]
          Length = 641

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 304/714 (42%), Gaps = 93/714 (13%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  LE  I  H + YY  ++P I D+++D L     ++     +L  +   +       
Sbjct: 6   RIQELEALIKKHQNLYYN-AEPEISDADFDMLWDELRSLDPQN-ELFATVPKDS------ 57

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                   K  H IP  S EK  + E  +K+  ++             F ++ K+DG  +
Sbjct: 58  ---ADGFPKAEHIIPMGSQEKAADPESFQKWAEKM---------PFTEFLVQYKLDGASM 105

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN------IPEIIEVRGEVYI 193
            ++YEKG+ + A  RGDG  G+D++A ++ +  +   L  +       P    VRGEV +
Sbjct: 106 ELQYEKGRLIRAVTRGDGKIGDDITANVKKMQGVVLELKGDSAPTGAAPFSGGVRGEVLM 165

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH-------GLGKT 246
           +K                   N RNAA+G+++R + +  + +L    +       G   T
Sbjct: 166 TKEVLHRF--------YPDKKNCRNAANGLMKRKDGSG-SEHLEIICYDAAAGTIGHPFT 216

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  + E L  ++  GF     V +  +   ++ Y   +  IRST+PYDIDGLV K 
Sbjct: 217 EPAPFTTETEKLNWLKTQGFLQVP-VTRCGSVREVIDYRAHIMDIRSTIPYDIDGLVIKN 275

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D   +      RAR P   I+ KF+ ++A T L  ++         TP+A ++PV + G 
Sbjct: 276 DLIDIADL--SRAR-PEKQIAFKFSLEEAITALRSVEWSES-GVTYTPIALIDPVQLAGT 331

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  A L N + I  L+           +++G RVLV + GE+IPK+  +I N     A+
Sbjct: 332 TVKRANLCNPNMIAELN-----------LKIGSRVLVTKRGEIIPKIEALIEN--PASAK 378

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   PS C  C + V+RD   +         C    AC      R++ ++  D  +I+  
Sbjct: 379 PIEQPSRCTSCGT-VLRDEGTR-------LYCPNP-ACPKLIHHRIEKWI--DTLDIQDF 427

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G   +   F ++     IR  +D++TL   +  +  ++         S   +Y +++ +R
Sbjct: 428 GTTLIKRLFDTQR----IRSVSDLYTLTVEELAAFERMGQ------KSAEKVYRALHAKR 477

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I L  F+    I  +G  +   L             +  ++A + +D+ +   V   G 
Sbjct: 478 EIPLPVFVAGFDIEGIGRTMMEKL------VDAGFDTLEKLLAASEEDFAA---VYQFGS 528

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A  +    +  ++   +      +           +  +  K   FTG L  ++R +A
Sbjct: 529 VLAHTLTAGLREVKD-EMLRLTGSGIIVIQPPVSAQENLPLAGKSFCFTGELNSLKRKEA 587

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  V Q G  V + +++    ++    D+  SK +KAQ+LG  I+ EE+FL LL
Sbjct: 588 EAMVQQKGGTVKSSVTKGLTYLVTNTPDSGSSKNKKAQELGTVIITEEEFLKLL 641


>gi|301168580|emb|CBW28170.1| DNA ligase [Bacteriovorax marinus SJ]
          Length = 628

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 173/702 (24%), Positives = 313/702 (44%), Gaps = 81/702 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  LE+EI +H   YY   +  I D EYD L+     +            P+ P+ K+
Sbjct: 4   KRIQELEKEIEHHKVLYY-KGQTEIPDHEYDKLEDELREL-----------SPDSPILKM 51

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
            G +  +  KV H    LSL K +  ++L  ++                     KIDG  
Sbjct: 52  VGSVVTAEDKVKHDEKMLSLAKTYKEDELATWMDGREA------------ISMYKIDGMS 99

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
            ++ YE G  V A  RGDG  GE++++    I TIP  +     + IEVRGE+Y  +  F
Sbjct: 100 CSLIYENGNLVLAKTRGDGTFGENITSKALWIDTIPNTIKEE--KRIEVRGEIYCDEEHF 157

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
            +L+D+M+A+G +   + RN  +GI+ R +   +++ L F    L    +I  + + E +
Sbjct: 158 FSLSDDMVALGLEKPTSQRNIVAGIISRKDHLQLSKKLTFKAFEL--LGDISVQTEVEKV 215

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +   GF              +    +E K   +   Y IDG+V+  ++    ++LGE 
Sbjct: 216 KYLEAQGFETLEYT-LHKDAKSLSKTIDEAKDFMAEGDYLIDGIVFSFNDQKWHRELGET 274

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A  PR+ ++ KF  +   T + +I  Q+ R GILTPVA ++PV + GA I+  TLHN   
Sbjct: 275 AHHPRYKMAFKFQGESRETVIENILWQVSRNGILTPVANVKPVELSGAKISRVTLHNFGL 334

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           +K  +           ++ GDR+ + R+GEVIPK ++++ +      + FS+P  CP C 
Sbjct: 335 VKQFE-----------LKQGDRIEIIRSGEVIPKFLEVVESS----DEEFSYPKTCPSCD 379

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
                    +  ++V          C A   E + +++ +    I+ L  ++L+   +++
Sbjct: 380 ---------EEIEVVDIRLICRNSECPAIVKESILNYIQK--IGIDDLSSKRLEELIRAK 428

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                +   +D++ L      +  K++      +   T L  +I K + + L  F+ +LG
Sbjct: 429 ----LVLKISDLYKLNMESLLTLDKVK------EKLATKLLGAIEKSKTVDLVTFLSALG 478

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I          +             +  + +   D     I +       A    +FY +
Sbjct: 479 ISGGAYNKCEKV------VFAGHDSLEKVKSLTPDKL---ILIDGFAKKSAD---DFYLS 526

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                 +   L+ V  S       V +++ NKK+  TG+L + +R   +  +     +V 
Sbjct: 527 LSEKFPLIEELESVGFSF-EEVIKVETKVSNKKICITGSLSE-KRSVIESKIRDASGIVV 584

Query: 679 AILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +S+ TDI++  D  +  SKL+KA+ LG+ I+ EE+ + ++
Sbjct: 585 SSVSKNTDILVTNDQSSGSSKLKKAKDLGILIITEEELISMI 626


>gi|149924280|ref|ZP_01912652.1| DNA ligase, NAD-dependent [Plesiocystis pacifica SIR-1]
 gi|149814860|gb|EDM74426.1| DNA ligase, NAD-dependent [Plesiocystis pacifica SIR-1]
          Length = 706

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 179/736 (24%), Positives = 302/736 (41%), Gaps = 99/736 (13%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP--DLARSEDPNGPLNKIG 79
            +L   I   +  Y+    P I D  YD L      +  A P  D      P GP+ +  
Sbjct: 33  DTLAALIRRTNHEYWNLHAPTIPDPVYDRLVEGLRRLDPAHPVLDELGEATPEGPVIEAD 92

Query: 80  GEMNLS-----LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              ++         V H+   LSL+K +  EDL  +  +                + PK+
Sbjct: 93  ATASIPPAERLGAPVRHTRAMLSLDKCYGPEDLYSWTEKF----------EGEVLVMPKM 142

Query: 135 DGTMITIRYE-KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----------SLNIPE 183
           DG   ++RY+ +GK   AA RG+G  GED++  +  +  +P+ L                
Sbjct: 143 DGVACSLRYDAEGKLFLAATRGNGSEGEDITVNVLEVEDVPQQLDPAAFAELPGPDGAAP 202

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHG 242
            +EVRGE+++  + F    ++        Y+NPRN  +G ++         Y L+F+ + 
Sbjct: 203 AVEVRGELFMKLSVFERYKEQ--------YSNPRNLTAGAIKHKERGKTKAYTLSFYAYD 254

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR--STLPYDID 300
           L          + E    +R LGF V            + + Y    + R    + Y+ID
Sbjct: 255 L---QGTELPTEREKFASLRALGFAVEECDFVPRG--ELQAAYERWSARRSADEIDYEID 309

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VY+  E + Q+++GE    PRW +++KF     +T L ++   + RTG +TPVA  +P
Sbjct: 310 GVVYRASEVAEQRRMGETGHHPRWSMAYKFQGDTGTTTLEEVLWSVSRTGTITPVAIFKP 369

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           + + GA+I  A L N ++   L            +  G  + V R G VIP V  ++   
Sbjct: 370 IELSGAMIARAGLFNLNHFDEL-----------GLTAGAAIEVTRRGGVIPYVERVVTP- 417

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
              + + F  P  CP C S  VR       +      C+    C + +L  L+HF     
Sbjct: 418 -GAEGETFDIPKRCPACNSEAVRR----KKRDGEFLYCSKPEGCGSARLGELQHFA--KV 470

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+G G + +         A  +  PAD +TL+          E     G  S  NL  
Sbjct: 471 VDIQGFGPKVVTQAVD----AGLLSSPADFYTLRVEDL------EEFDRLGRRSAENLVA 520

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            ++  R I L  F+ SLGI H+G + A  LA  + +           +          + 
Sbjct: 521 QVDAHRRIELPIFLQSLGIDHLGKQNAVLLANEFRTLAGVRGVSREAL----------LE 570

Query: 601 VPLVGDIIAQAIVEFYQNP--------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           V  + D IA A++   +           ++  V+   ++               +  K  
Sbjct: 571 VKGIKDAIADALLAGLETRAELIDALLEHVTVVDLPERDPEAEAEAAAAAAEGALGGKTF 630

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG---SKLEKAQQL----- 704
           +FTG L+   R +AQE V   G V ++ +S+  D ++VG   G   SK +KA++L     
Sbjct: 631 LFTGALEAFTRKQAQEKVEANGGVPASGVSKSLDYLVVGAGKGAKSSKQKKAEKLIDGGA 690

Query: 705 GVKIMNEEQFLFLLQQ 720
            +K+++E  FL ++ +
Sbjct: 691 ALKVISEGDFLAMIGE 706


>gi|300728177|ref|ZP_07061548.1| putative DNA ligase [Prevotella bryantii B14]
 gi|299774603|gb|EFI71224.1| putative DNA ligase [Prevotella bryantii B14]
          Length = 705

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 173/756 (22%), Positives = 295/756 (39%), Gaps = 108/756 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E    E+      ++   D YY     I+ D E+DAL  R   +      +        
Sbjct: 2   AEDKILEMRKAVDLLNRAADAYYNGQAEIMTDYEWDALFDRLKVLEQETGVILEE----S 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P++ +  +      K  H    LSL K    EDL K+                   +  K
Sbjct: 58  PIHHVSADSITG-QKEEHEFAALSLAKTKKTEDLTKWAD------------GKPIWISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +   Y+KGK      RGDGH G +++    AI  IP+ +       I VRGE  I
Sbjct: 105 LDGLTLVATYDKGKLTKVVTRGDGHFGTNITHLAPAIQGIPQKIKNK--GHIVVRGECVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
           S  DF   N  +I  G   YANPRN ASG L   +  ++ +R+L +    L  T E    
Sbjct: 163 SYADF---NQFLIESGED-YANPRNLASGSLTLKDIDEVKSRHLQWIPFTLVYTDEN-IN 217

Query: 253 GQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSI--RSTLPYDIDGLVYKVDEF 309
              + +  +   G                I    +       ++  P+ +DGLV   +++
Sbjct: 218 SWGKRMAFLEDNGMKTVKHECILTPNQDNIQKVIDRWTEEVTKNKNPFPVDGLVIAYEDY 277

Query: 310 SLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +          R   + K+ ++ A+++L  I+        ++PVA  EPV + G  +
Sbjct: 278 EYSQTGSITGHHATRAGYAFKWKDESATSKLDHIEWSCAA-STISPVAVFEPVELEGTTV 336

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDR---VLVKRAGEVIPKVVDIIVNERHPDA 425
             A+L N    + L              +GD+   + V +A ++IPKV+ +         
Sbjct: 337 QRASLCNISECERLG-------------IGDKDSVLSVIKANKIIPKVIQV-----QQKV 378

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P  CP+C S+     +  +G       C+    C A+QL++   FVS+D  +I+G
Sbjct: 379 GELHIPETCPVCHSQTQIVTSIASGTRT--LHCSNP-KCPAKQLKKFARFVSKDGLDIDG 435

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           + +Q L  F         I+  ADIF L         +I  + GFG  S  N++ +I K 
Sbjct: 436 ISEQTLSRFIN----MGWIKEYADIFRLSAH----LNQIATLEGFGKKSANNIHKAIEKS 487

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYL--------------------------SYQN 579
           RN    + +++L I  VG ++   L K Y                               
Sbjct: 488 RNAEAHKLLYALCIPLVGKDVCNRLLKSYPLEKLAAIASGNPNINKPIVTEKEDNYELDL 547

Query: 580 FAQ-EINNIIAHNNDDWLS---------------LIRVPLVGDIIAQAIVEFYQNPRNIC 623
           FAQ E  N++++  +                      +  +G   + ++V+++ +  N  
Sbjct: 548 FAQNEQENLLSNTTEGTTDANTFTPLSIDTRIAIFAGIDGLGPEKSASVVKWFSDEENQN 607

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILS 682
               LL  +  S   +   +  + E    V TG +   + R++ + Y+   G  V+  +S
Sbjct: 608 EYRNLLGLLHLSQDDN-NPLGQKCEGLTFVITGDVHHYKNRNELKAYIESQGGKVTGSVS 666

Query: 683 RKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
           + T  +I  D  +   K +KA QL + I++E+QF+ 
Sbjct: 667 KSTSYLINNDVTSTSGKNQKAHQLNIPIISEDQFIE 702


>gi|281414408|ref|ZP_06246150.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
          Length = 549

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 145/557 (26%), Positives = 233/557 (41%), Gaps = 93/557 (16%)

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHG-----IVSYYNEMKSIRSTLPYDID 300
                 + Q+E    +   G PV+   R+           +V+   E    R  L ++ID
Sbjct: 2   VEAFGLESQHEAYDALASWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHEID 61

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K D F+ Q+ LG  +R PRW  ++K+  ++  T L DI + +GRTG +TP A LEP
Sbjct: 62  GIVLKADAFADQRYLGHTSRVPRWAAAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVLEP 121

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ ++ ATLHN+D +K            + + +GD V+V++AG+VIP+VV  ++  
Sbjct: 122 VTVAGSTVSLATLHNQDVVKA-----------KGVLIGDTVVVRKAGDVIPEVVGPVLPL 170

Query: 421 RHP------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
           R        + + F  P+ CP C + +         +     RC    +C AQ   R++H
Sbjct: 171 REKAIEAGRELREFVMPAHCPSCGTPL-----APAKEGDVDLRCPNARSCPAQLAGRVEH 225

Query: 475 FVSRDAFNIEGLGKQQLDFFFK-------------SEDPAFSIRIPADIFTL-------- 513
             SR AF++E LG++   +  +               +    I   A IF L        
Sbjct: 226 LASRGAFDVEALGEEAARWLVQGPGEDPAEHEGHVRPEGPGPITAEAQIFDLASGTPEAI 285

Query: 514 ----QRRQQTSTTKIENILGFGD-----------------------------------VS 534
                    T   +    +                                        +
Sbjct: 286 TGPRGEDGLTDLQRSLGAVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPTAN 345

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L+D + K ++  L R + +L IRHVG   ARSLA  + S            A    D
Sbjct: 346 TLRLFDELEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALR------AAAEAGD 399

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
              L  +  VG IIA A++E++    +   V+             +++    +E   +V 
Sbjct: 400 RDRLAEIDGVGPIIADALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPRTLEGLTVVV 459

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L+   R  A+E +   G   S  +S+KTD ++ G+  GSKL+KAQ LGV ++  EQ 
Sbjct: 460 TGSLEGFSRDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLEPEQV 519

Query: 715 LFLLQQYNTTLRIHDDD 731
             LL      +R  D D
Sbjct: 520 TALLAGGPDAVRPADTD 536


>gi|330800435|ref|XP_003288242.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum]
 gi|325081750|gb|EGC35255.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum]
          Length = 835

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 190/799 (23%), Positives = 328/799 (41%), Gaps = 136/799 (17%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA-FPDLARSEDPNGPLNKI 78
           E++ L  +I  ++D YY  S   I D EYD L ++ +++      D   +++ +   NK+
Sbjct: 51  EINELRNKIKRYNDLYYNKSISEISDYEYDKLFKKLESLEKQINNDEDGNDNASLITNKV 110

Query: 79  GGEMNLSLF--KVTHSIPTLSLEKIWNIEDLRKFITRIY-------------------RF 117
           G  +  +    K  H+   LSL+  +++ED++ F  +I                      
Sbjct: 111 GAPVRSNGNNNKYRHTTRMLSLQNTYSLEDIQSFKNKIEKFLLKKLKLENNTTSNSDLNT 170

Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACI-RAIPTIPRV 176
                 N++ +++E K DG  I++ Y   K V    RGDG  GED+++   + IP + ++
Sbjct: 171 LSSFGINNLEYSMELKYDGIGISLVYSDSKLVRILTRGDGEIGEDITSNALQFIPQLNKL 230

Query: 177 LSLNIPE------IIEVRGEVYISKNDFLALNDEMIAVGR-KPYANPRNAASGILRR--- 226
           ++L +P         E+RGEV ++K     +N           Y N RN  SGILR+   
Sbjct: 231 INLKLPNQYSNYKEFEIRGEVVLNKTYLETINKIKSDNNDTHQYKNTRNIVSGILRKNLI 290

Query: 227 -----------------------LNPTDITRYL------NFFVHGL---GKTSEIFAKGQ 254
                                  +   DI + L      +FF +      K   I    Q
Sbjct: 291 EIDDEQHNENNVDDDNSSNSSSNVKKNDIEQLLHNNIKFDFFAYNFIPSNKNQTINGDTQ 350

Query: 255 YEMLQKMRCLGFPVNNG----------VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              L  ++ +GF V+ G           +Q +    I  Y  +    R    +DIDG+V 
Sbjct: 351 SSRLGLLKSIGFQVDPGADVISLPTLNNKQPHDIGPIQQYIEKWNENRFKFQWDIDGIVI 410

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K++    Q +LG+  RSPRW  ++KF  K   + +LDI +Q+GRTG +TPVA ++PV I 
Sbjct: 411 KINSIDTQTKLGDINRSPRWAFAYKFNAKSEVSTILDIVLQVGRTGKVTPVALVDPVVIH 470

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII------- 417
           G  I+ ATL+N +YI+ L            +  G +VL++RAG+VIPK++  I       
Sbjct: 471 GVTISRATLNNLNYIQKLQ-----------LNKGSKVLIERAGDVIPKIISKINVPEQQP 519

Query: 418 -VNERHPDAQPFSFPSFCPICQSRVVRDLNPKT--GKLVAAHRCTGGLACSAQQLERLKH 474
              +  P+         C    + V    N      K            C  QQ + +  
Sbjct: 520 QEQQLQPEDGYLKNIFKCNSNGNLVCPCANESELIQKPGYIDYFCVDSNCPDQQFQEISW 579

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FV + A NI+G+G  Q+   F+       I    D++ L++ +         + G+  V 
Sbjct: 580 FVDKKAMNIKGIGISQIKDLFEHN----FIEDAGDLYLLKKYKSQLLE----LKGYNHVK 631

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-----AQEINNIIA 589
           V N+ ++I + ++  L   +  +GI  +G   ++ LA+ +    N       Q I N   
Sbjct: 632 VNNMLEAIEESKSRGLSSLLCGMGIPGIGRANSKILAQKFQHLDNLINAPSIQSIENQSK 691

Query: 590 HNNDDWLSLIR-----VPLVGDIIAQAIVEFYQNPRNI--------------------CA 624
                  ++        P   + I   I +F +N  N+                      
Sbjct: 692 LGRQTSEAIYNYFNPIDPTEKEYINFLIYKFKENNLNLSYTNNNNDNDNDNDNDNDNDND 751

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT-QLGAVVSAILSR 683
            +      + +I     N+ + I  K +V TG L    R   ++ +  +    V + ++ 
Sbjct: 752 NDNDNNNNNNNIESKNINIDNPIYKKNIVITGKLSIGDRDSVKDILESKYNCKVQSTINS 811

Query: 684 KTDIIIVGDNPG-SKLEKA 701
            TDI+++G  P  +K+ KA
Sbjct: 812 LTDILLIGGKPANAKISKA 830


>gi|162452733|ref|YP_001615100.1| DNA ligase [Sorangium cellulosum 'So ce 56']
 gi|190359289|sp|A9F3W3|DNLJ_SORC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161163315|emb|CAN94620.1| DNA ligase [Sorangium cellulosum 'So ce 56']
          Length = 676

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 174/724 (24%), Positives = 290/724 (40%), Gaps = 98/724 (13%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + I  +   YY    P I D+ +DAL+    A+  A P LA          +
Sbjct: 26  KARIEELAERIEKYRASYYA-GHPEISDAAFDALEDELRALDPAHPVLA----------R 74

Query: 78  IGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP---- 132
           +G         K  H IP  SL K+ + ++L  ++ R      K           P    
Sbjct: 75  VGSASLITEWEKARHEIPMGSLNKVVSEDELLGWVARCDEILVKDGHGDGGTGAAPPAPG 134

Query: 133 -------------KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
                        K+DG  I + Y+ GK V A  RGDG  GE ++A +  +  IP  +  
Sbjct: 135 SISSVAGDLFVAEKLDGISIEVIYKGGKLVDAITRGDGEWGERITANVARMKGIPSRIRE 194

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFF 239
                + VRGE+ +  +D                 +PRN A+G  +R +          F
Sbjct: 195 K--GRLSVRGEIILRLSDM--------KRHFPGVTSPRNMAAGAAKRFDGQGAEHCTVLF 244

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK-SIRSTLPYD 298
            + +    EI           +R LGF          +   +V  Y      +R+ L Y+
Sbjct: 245 -YDVADHLEIP--TCRARFAWLRELGFATPQ--TAHGSVEDVVKLYRRYSSELRAGLDYE 299

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDGLV  VD   +Q  LG+  R PR  ++ KFA     T ++ I    G +G +TPVA +
Sbjct: 300 IDGLVVYVDSLHVQGLLGDVNRRPRGAVAFKFASPAKVTTVVAIQWDTGPSGRVTPVAIV 359

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + GA +  A+LHN   ++ L            I VGD VLV R  +VIP V +++ 
Sbjct: 360 EPVELAGANVRRASLHNSANVRSL-----------GIGVGDEVLVSRRNDVIPYVEEVV- 407

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R P A P   PS CP+C + +V +           +      AC A    R+ +++  
Sbjct: 408 EKRGPVAVP---PSVCPVCSAPLVVEGE---------YLLCRNAACRALIEGRIHNWI-- 453

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           DA      G + ++        A  +R P D++ L  +      +       G+ S T  
Sbjct: 454 DAIGALEWGDKLIEQVV----AAGLVREPLDLYKLTVKSIADLDRR------GEKSATKC 503

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            + +  R  ++L  F+ +LGI     + AR L     +       I  ++A   D+    
Sbjct: 504 LEQLKSRLPLALPVFLAALGIEGFAIQTARLLVSAGYT------TIEKLLAAGEDELA-- 555

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +P +G I A +IV   +        + + + ++  I          +      FTG  
Sbjct: 556 -GIPGLGAIKAASIVRGLRARS-----DEIGRLLAAGIVPVAPEAEGPLAGLTFCFTGAG 609

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
            +  R +    V   G  V   ++++ + +++ D  +  SK  KA++ G K++ E+    
Sbjct: 610 ARP-RGELTHLVESSGGRVLNSVTKELNYLVIADVASTSSKAVKARKYGTKLITEDDLDK 668

Query: 717 LLQQ 720
           L+ +
Sbjct: 669 LIAE 672


>gi|42527046|ref|NP_972144.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405]
 gi|81412203|sp|Q73MH0|DNLJ_TREDE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|41817470|gb|AAS12055.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405]
          Length = 645

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 167/721 (23%), Positives = 311/721 (43%), Gaps = 98/721 (13%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  LE+ I  H D YY  ++P I D+E+DAL     A+          +  N     
Sbjct: 4   EKRILDLEKTIKKHQDLYYN-AQPEISDAEFDALWDELKAL----------DPQNKLFFT 52

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +  E      K  H IP  S EK  +      +  ++             + ++ K+DG 
Sbjct: 53  VPLESTEGFAKSEHIIPMGSQEKAADPPSFEAWALKM---------PFKEYIVQYKMDGA 103

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-------PEIIEVRGE 190
            + ++YE+G FV A  RGDG  G+D++  +  +  + + +++N        P    +R E
Sbjct: 104 SLELQYEEGHFVRAVTRGDGKIGDDITENVLKMKGLIKDITVNAGPAYGTKPFSGGIRCE 163

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS--- 247
           V + ++              K  AN RNAA+G++++ N  ++  +LN F +   + S   
Sbjct: 164 VIMLRSIHQKY--------FKDKANCRNAANGLMKKKN-GELCEHLNLFAYDAVQGSIGR 214

Query: 248 ----EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               +   K + E L  ++  GF     V+   +   ++ Y   +  IR +L YDIDGLV
Sbjct: 215 PFTGDAPFKTESEKLVWLKKAGFNCVE-VKYCKSIAEVIEYRAHVMDIRPSLDYDIDGLV 273

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K D      +  +RAR P   I+ KF+ ++A T L +I+         TP+A +EPV +
Sbjct: 274 IKNDTIDP--EDMKRAR-PEKQIAFKFSLEEAVTVLKEIEWSES-GATYTPIALIEPVRL 329

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  A+L N + IK L+           +++G RV+V + GE+IPK+    + E  P
Sbjct: 330 AGTTVKRASLANPNIIKALN-----------LKIGSRVVVTKRGEIIPKIEA--LAENPP 376

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           + +   +P  C +C S +  +             C   ++C      R++ ++S    +I
Sbjct: 377 NVKEIEYPDTCSVCGSPLTNEGTR--------LYCPN-MSCPKLIHHRIEKWIS--VLDI 425

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
              G   +   F+       +    D++TL   +  +  ++  +      S   +Y +++
Sbjct: 426 RDFGITLIKRLFEMGR----VNSITDLYTLTVEELAAIDRMGKL------SAEKVYKALH 475

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            ++ ISL  FI    I  +G  +   L +   +      ++N ++  +  D+     V  
Sbjct: 476 SKKEISLTEFIAGFDIEGIGETMVEKLEEAGFN------DLNELLGASEADFA---NVYQ 526

Query: 604 VGDIIAQAIVEFYQ--NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            G +++  +V             ++    ++ P +   E  V   ++     FTG L  +
Sbjct: 527 FGQVLSHTLVTNLSILKDEMTGLIDKGYIKIKPPLTSEEGAV---LKGLSFCFTGELNTM 583

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +R +A+  V + G  V + + +    ++    D+  SK +KAQ+LG  I+ EE FL L+ 
Sbjct: 584 KRAQAEALVKEKGGTVKSSVVKGLSYLVTNTPDSGSSKNKKAQELGTAIITEEAFLNLIG 643

Query: 720 Q 720
           +
Sbjct: 644 K 644


>gi|153813748|ref|ZP_01966416.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174]
 gi|149830168|gb|EDM85261.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174]
          Length = 538

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 155/588 (26%), Positives = 265/588 (45%), Gaps = 65/588 (11%)

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +G E    L K TH  P LSL+K  + + LR FI             +    L 
Sbjct: 11  DSPTVNVGYEAVDVLPKETHESPMLSLDKTKDRDVLRAFI------------GTHPTLLS 58

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I + YE G+ + A  RG+G  GE ++   +    IP  L +     + +RGE 
Sbjct: 59  WKMDGLTIVLTYENGELLKAVTRGNGTVGEVITNNAKVFKNIP--LKIAYRGRLVLRGEA 116

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI- 249
            I+ +DF  +ND +  V  K Y NPRN  SG +R+LN      R + F+   L    ++ 
Sbjct: 117 IITYSDFEKINDTIEDVDAK-YKNPRNLCSGSVRQLNNQITAERNVRFYAFALVSAQDVD 175

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
               +   ++ +R  GF V              + Y+           +  DGLV   D+
Sbjct: 176 MHNSRKYQMEWLRRQGFEVVEYRMVTGENLDEAMDYFAHAIEK---NDFPSDGLVALYDD 232

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +  + LG  A+ PR   + K+A++   T L +I+    RTG++ PVA  +PV + G  +
Sbjct: 233 IAYGESLGSTAKFPRNAFAFKWADEVRETTLREIEWSPSRTGLINPVAVFDPVELEGTTV 292

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A++HN   +K L            + +GD + V +A  +IP++ + +       +   
Sbjct: 293 SRASVHNVSIVKDLQ-----------LGIGDTIQVYKANMIIPQIAENLTR-----SSNL 336

Query: 429 SFPSFCPICQSR--VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
             P  CP C     V+R+ +      V A  C     C+A++++    FVSRDA NI+GL
Sbjct: 337 EIPEICPACGQEARVIREND------VEALYCMNP-DCAAKKIKAFTLFVSRDAMNIDGL 389

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            +  L+ F         I    DIF +++ +     +I  + GFG+ S  NL +SI K  
Sbjct: 390 SEATLEKFIAK----GFIHNFGDIFEIEKFR----DEIVTMEGFGEKSYENLMNSIEKAE 441

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L + I+SLGI ++G   A+ + +++          +++    + D   +  +  +G 
Sbjct: 442 ETTLAKVIYSLGIANIGLSNAKVICRHFD---------DDLDKIRSADEEEISAIDGIGP 492

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
           +IA+++ +++ NP N   V+ LLK +   I + E +          V 
Sbjct: 493 VIAKSLTKYFSNPENNQKVDHLLKYL--HINKEEISGEQIFAGMNFVI 538


>gi|153831457|ref|ZP_01984124.1| DNA ligase [Vibrio cholerae 623-39]
 gi|148873061|gb|EDL71196.1| DNA ligase [Vibrio cholerae 623-39]
          Length = 373

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 151/399 (37%), Positives = 233/399 (58%), Gaps = 29/399 (7%)

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233
           R+   + P  +EVRGEV++ K  F ALN   +  G K + NPRNAA+G LR+L+      
Sbjct: 2   RLQGADFPTRLEVRGEVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQ 61

Query: 234 RYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR 292
           R L F+ + +G       A   Y+   +++  G P+    +   +   + ++Y ++   R
Sbjct: 62  RPLAFYAYSVGVIEGGELATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRR 121

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
            +L Y+IDG+V KVD+  LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +
Sbjct: 122 QSLAYEIDGVVIKVDDIQLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAI 181

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPVA+LEPV +GG  ++NATLHN D I+ L            + VGD V+++RAG+VIP+
Sbjct: 182 TPVAKLEPVFVGGVTVSNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQ 230

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
           +V +++  R  +A+   FP+ CP+CQS V R          A  RC+GGL C AQ+ E L
Sbjct: 231 IVSVVLERRPENAKSIVFPTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEAL 284

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532
           KHFVSR A ++EGLG + ++     E     +  PAD+F L+  + T   ++      G 
Sbjct: 285 KHFVSRKAMDVEGLGDKVIEQLVDREM----VSTPADLFRLRAGELTILERM------GP 334

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            S  N+ D++NK +  +L +F+++LGIR VG   A +LA
Sbjct: 335 KSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLA 373


>gi|320537878|ref|ZP_08037793.1| DNA ligase, NAD-dependent [Treponema phagedenis F0421]
 gi|320145297|gb|EFW36998.1| DNA ligase, NAD-dependent [Treponema phagedenis F0421]
          Length = 648

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/719 (23%), Positives = 301/719 (41%), Gaps = 97/719 (13%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            LE+ I YH D YY      I DSE+DAL     A+     +L  +         +  E 
Sbjct: 9   ELEKLIRYHQDLYYNKEA-EIPDSEFDALWDELRALEPEN-ELFFT---------VPKES 57

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           +    K +H IP  S EK  N E    +  ++             F ++ K+DG  + ++
Sbjct: 58  SDGFPKASHIIPMGSQEKAANPEAFTAWALKM---------PFTQFLVQYKLDGASLELQ 108

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL------NIPEIIEVRGEVYISKN 196
           YE+G+FV A  RGDG  G+D++A +R +  +   L          P    +RGEV ++K 
Sbjct: 109 YERGRFVRAVTRGDGKIGDDITANVRKMQGVVSELQGESAPAGAQPFSGGIRGEVLMTKE 168

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK---- 252
                  +         AN RNAA+G+++R + +     L      +  + E        
Sbjct: 169 IHKKFYADK--------ANCRNAANGLMKRKDGSGSEHLLVICYDAVQGSPEKPFTGTAP 220

Query: 253 --GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              + E L  ++  GF     ++  N+   ++ +   +  IR +LPYDIDGLV K +   
Sbjct: 221 FSTELEKLAWLKRNGFSTVE-IQVCNSIQEVIDWRAHVMDIRESLPYDIDGLVIKNNLID 279

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
                  R R P   I+ KF+ ++A T L +++         TP+A  +PV + G  +  
Sbjct: 280 PDDV--SRPR-PEKQIAFKFSLEEAITTLREVEWSES-GATYTPIAITDPVRLAGTTVKR 335

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A L N + I  ++           +++G +V++ + GE+IPK+  ++ N    +      
Sbjct: 336 ANLANPNMITDMN-----------LKIGSKVVITKRGEIIPKIETLVEN--TDECTEIPM 382

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ C  C S ++ +             C    AC      R++ +++    +I   G   
Sbjct: 383 PTVCGTCGSSLLNEGTR--------LFCPNA-ACPKLIHHRIEKWIA--TLDIRDFGINL 431

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F S      +    D++TL      S  ++      G++S   ++ +++ ++ ISL
Sbjct: 432 IQRLFDSNK----VNSIVDLYTLTVEDLASIERM------GEISAKKVHSALHAKKEISL 481

Query: 551 ERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           E FI    I  +G  +   L +  + +     +           D      V   G+++A
Sbjct: 482 ETFIAGFDIDGIGVTMVEKLTQAGFNTLDKLFEA----------DEQKFSTVYQFGEVLA 531

Query: 610 QAIVEFYQN--PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           Q +V   Q         +E     + P     E   ++ +      FTG L  I+R +A+
Sbjct: 532 QNLVRGLQTLKAEMTALIEKGFIPIKPPAAPDE---NAPLHGMSFCFTGELTAIKRSEAE 588

Query: 668 EYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           + V + G  V + +++    ++    ++  +K +KAQQLG  I+ EE F  LLQ+ + T
Sbjct: 589 QLVKEKGGSVKSSVTKGLSYLVTNTPESGSAKNKKAQQLGTAIITEEAFFALLQKEHKT 647


>gi|328947954|ref|YP_004365291.1| DNA ligase [Treponema succinifaciens DSM 2489]
 gi|328448278|gb|AEB13994.1| DNA ligase [Treponema succinifaciens DSM 2489]
          Length = 651

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/709 (22%), Positives = 302/709 (42%), Gaps = 87/709 (12%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +S LE+ I  +   YY   +  I D+E+D L     ++  A P L          +K+
Sbjct: 23  KRISELEKLIEKYQASYYN-GEAEISDAEFDKLWDELKSLDSANPIL----------HKV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G + + +  K  H +P  S EK    E+   +  +          +   + +E K+DG  
Sbjct: 72  GAD-SGNFQKSPHVMPMGSQEKAATPEEFLDWAKK---------HDYSEYLVEYKLDGAS 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + ++Y  G F+ A  RGDG  G+ ++A  + +  + + L         +RGEV ++    
Sbjct: 122 LELQYSDGIFLRAVTRGDGTVGDVITANAKKMQGVVQELKEKF--TGGIRGEVIMTHQVH 179

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI-FAKGQYEM 257
                          AN RNAA+G+++R +  + +  L    + +  +        +   
Sbjct: 180 EKF--------FSDKANCRNAANGLMKRKD-GEGSENLTLITYDVWASEGKQPFNDEEGK 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  ++  GF V    +   +   ++ Y + +  +R  L YDIDGLV K      +  L +
Sbjct: 231 LDFLQRNGFNVVPL-KICKSTQEVIDYRSSVMELRKNLDYDIDGLVVKERAVDHEDALRD 289

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQ-IGRTGILTPVARLEPVNIGGALITNATLHNE 376
           R   P   I+ KF+ ++A + + +I+    G T   TPVA  +PV++ G  +  A+L N 
Sbjct: 290 R---PDRQIAFKFSLEEAVSIVRNIEWNETGAT--YTPVAVFDPVDLNGTTVKRASLVNP 344

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           + I+ L+           +++G  V+V + GE+IPK+V ++  +   +      P  C  
Sbjct: 345 NLIRALN-----------VKIGSHVVVVKRGEIIPKIVSVLPEQ--ENLPSVKIPEKCAC 391

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + ++ +             C     C  + L +L  ++  +  +I  LG+  +   F+
Sbjct: 392 CGTSLIDEGTR--------LFCPNK-NCEKRILHQLLKWI--NVIDIRDLGETLITSLFE 440

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS--VTNLYDSINKRRNISLERFI 554
           ++     +R  +D+++L              +     S     ++ SI  RR I L +FI
Sbjct: 441 TKK----VRSISDLYSLTASDLVPYFLNSESMEKEKKSLGAEKVFASIQSRRKIPLAKFI 496

Query: 555 FSLGIRHVGAEIARSL-AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
               I  +G  +  +L A  + + Q         IA           V    + +A  +V
Sbjct: 497 AGFDIEGIGETVVETLIAGGFNTLQKIFDAKEEEIAG----------VYRFAETLAHTLV 546

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           E  Q   N   +++L+   + S+   E     ++  K   FTG L  ++R  AQ  V Q 
Sbjct: 547 EGIQE--NREEMQSLVSSGTISVI--EGAAQGKLAGKSFCFTGELVSMKRQDAQNLVKQN 602

Query: 674 GAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  V + + +    ++  D  +  SK +KA +LG+ +++E++FL L++ 
Sbjct: 603 GGAVKSSVVKGLSFLVTNDTSSGSSKNKKAMELGIPVIDEKEFLALIKD 651


>gi|317470612|ref|ZP_07929998.1| DNA ligase [Anaerostipes sp. 3_2_56FAA]
 gi|316901903|gb|EFV23831.1| DNA ligase [Anaerostipes sp. 3_2_56FAA]
          Length = 559

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/570 (26%), Positives = 266/570 (46%), Gaps = 49/570 (8%)

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           G+G  GE V+   +    +P+ ++      + +RGE  I  +DF  +N++M  +  + Y 
Sbjct: 34  GNGEVGEVVTNNAKVFVNLPKKIA--YKGTLVIRGEAVIHYSDFRRMNEDMEDLDSR-YK 90

Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGV 272
           NPRN  SG +R+LN      R + F+   +    ++ F     E     R LGF + + V
Sbjct: 91  NPRNLCSGSVRQLNNEVTAKRNVRFYGFSVADVPDVDFHNSVEEKFIWARSLGFDIVDYV 150

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
                   +                  DGLV   D+ +  + LG  A+ PR  I+ K+A+
Sbjct: 151 AVTK--DTVAEEVERFSQAIENNDQPSDGLVLIYDDIAYGRSLGTTAKFPRDSIAFKWAD 208

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           + A T L +I+    RTG++ PVA  +PV + G+ ++ A+LHN   ++ L+         
Sbjct: 209 EIAETTLKEIEWSPSRTGLINPVAIFDPVELEGSTVSRASLHNISVMEELE--------- 259

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
             + VGD++ V +A  +IP++ +     R  DA     P  CP C  +   +       L
Sbjct: 260 --LGVGDQISVYKANMIIPQLAEN--QTRSGDAP---IPDTCPACGGKTEIEEENGIRTL 312

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           V    C     CSA++++   HFVSRDA N++GL +  L            +    D+FT
Sbjct: 313 V----CPNQF-CSAKKIKLFSHFVSRDAMNVDGLSEASLHKMMDK----GLLNELYDLFT 363

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L+  +     +I  + GFG+ S       +   + ++L +F++SLGI +VG   A+ + +
Sbjct: 364 LKEHK----EEIIEMEGFGEKSFIIWRMPLRGTKKVTLPKFLYSLGIANVGLSNAKLICR 419

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
           Y+          +++ A  N +      +  +G II +A+  +++   N   V+ LL+ V
Sbjct: 420 YFE---------DDLDAIRNAEAEDFTAIDGIGPIIGEAVSGYFRLENNKQTVDRLLQYV 470

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                R  +     ++ K  V TG+L+    R + QE +  LG   +  +++KTD +I  
Sbjct: 471 EIE-KRQTEETEKLLDGKTFVITGSLEHYENRKQLQEQIEILGGKATGSVTKKTDYLINN 529

Query: 692 DN--PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +     SK +KA +L + I+ EE+F+ +++
Sbjct: 530 NKNSASSKNKKAMELSIPIITEEEFMDMIK 559


>gi|325922521|ref|ZP_08184282.1| NAD-dependent DNA ligase [Xanthomonas gardneri ATCC 19865]
 gi|325546986|gb|EGD18079.1| NAD-dependent DNA ligase [Xanthomonas gardneri ATCC 19865]
          Length = 590

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/604 (27%), Positives = 277/604 (45%), Gaps = 155/604 (25%)

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ML ++R  GFPV+  V       G+++YY  + + R  LP+DIDG+VYK+D+ + Q+++G
Sbjct: 1   MLAQLREWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLPFDIDGVVYKLDDLAGQREMG 60

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN 
Sbjct: 61  FVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNA 120

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  QP+  P+ CP+
Sbjct: 121 DQIARL-----------DVRVGDTVIVRRAGDVIPEVAGVVADQRPPGTQPWQMPTQCPV 169

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++    
Sbjct: 170 CGSEIVREEGE------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVD 223

Query: 497 SE-------------DPAFSIRIP-----ADIFTLQRRQQTSTTKIENIL---------- 528
           S              D    +R+         F  + R+  +T     +           
Sbjct: 224 SGVVQGVADLYLLTVDQLLQLRLISTAESPHAFLREAREHLATGAYAQLENTVVSIGVDL 283

Query: 529 ---------------------------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
                                              NL ++I K R+ +LERF+F+LGI H
Sbjct: 284 AGEREVPQTWQADLLRAGLPAFDWNRKKIATKWAENLIEAIEKSRDTTLERFLFALGIEH 343

Query: 562 VGAEIARSLAK-------------------------------YYLSYQNFAQEINNII-- 588
           VG   A++L+                                ++L      Q I++++  
Sbjct: 344 VGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFLDQPGNQQAIDDLLQR 403

Query: 589 ----------------AHNNDDWLSLIRVPLVGDIIAQ---------------------- 610
                           A +    L  + +P V  + AQ                      
Sbjct: 404 GVRIGDAHPPSPKLRDALSFASVLEDMDIPKVTPVRAQQLAAAVDSFDALRSAGADALLQ 463

Query: 611 ---------AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
                    ++ ++ + P N       +  ++ V   +   +   +  ++ + +V TGTL
Sbjct: 464 AGVPAPVVASVQQWLERPENAALASDAQQAMETVLSRLPEADALQTGPLDGQTVVITGTL 523

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L
Sbjct: 524 AALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFL 583

Query: 719 QQYN 722
            ++ 
Sbjct: 584 GEHG 587


>gi|330879787|gb|EGH13936.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 347

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/350 (35%), Positives = 191/350 (54%), Gaps = 11/350 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV++ ++ AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPV
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPV 347


>gi|332297848|ref|YP_004439770.1| DNA ligase [Treponema brennaborense DSM 12168]
 gi|332180951|gb|AEE16639.1| DNA ligase [Treponema brennaborense DSM 12168]
          Length = 646

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 167/719 (23%), Positives = 300/719 (41%), Gaps = 87/719 (12%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + + +A   +  L   I  + D YY   +  I D+E+DAL      +  A P L      
Sbjct: 1   MDLFEA-SRVQELAALIEKYQDSYYN-GEAEISDAEFDALWDELKQLDPAHPVL------ 52

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
               ++IG + + +  K +H +P  S EK  + E+   +  +              + +E
Sbjct: 53  ----HRIGSD-SGNFLKASHRMPMGSQEKAADPEEFLAWAEK---------HPYDEYLVE 98

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVR 188
            K+DG  + ++Y+ G F  A  RG+G  G+D++   R +  +   L+ +    P    +R
Sbjct: 99  YKLDGASLELQYDNGVFAKAVTRGNGAVGDDITVNARKMGGVKLRLTRDSSPCPYTGSIR 158

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GEV +  +                 AN RNAA+G++RR +      YL+   +    +  
Sbjct: 159 GEVVMDHDVHR--------THFPDKANCRNAANGLMRRKDGEGCE-YLHVVCYDALFSDH 209

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            FA  Q + +  +   GF          T   ++ Y  ++   R+ LPYDIDGLV K   
Sbjct: 210 QFADEQ-DKIAWLSACGFQTVPL-EICKTAQEVIDYRAKVMESRAELPYDIDGLVVKERR 267

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +     RAR  R  I+ KF+ ++A + + +I+         TP+A  +PV + G  +
Sbjct: 268 IDPEDA--ARARPDR-QIAFKFSLEEAVSVVREIEWSES-GATYTPIAVFDPVELAGTTV 323

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV-----NERHP 423
             A+L N + ++ L            +R+G  ++V + GE+IPK+  ++       +   
Sbjct: 324 KRASLVNPNTMRAL-----------GVRLGSHIVVTKRGEIIPKIESVVPQSDSAEDSPD 372

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           ++   + PS C  C++ +V +             C    AC  + L RL+ +++    +I
Sbjct: 373 ESATCAVPSECGTCRTALVDEGTR--------LYCPNK-ACPKRILHRLEKWIT--VLDI 421

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS--VTNLYDS 541
             LG   +   F S      +R  +D++TL  ++ T     E  L     S     +Y S
Sbjct: 422 RDLGTTLIRALFDSGR----VRSVSDLYTLTVQELTPYFLAEESLAKEKKSLGAEKVYKS 477

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +  RR ISL  F+    I  +G  +   L   +       + +    A        +  V
Sbjct: 478 LQSRRKISLAAFVAGFDIEGIGETLVEKLVASHPDMDTLEKLLGAAEA-------EIALV 530

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
              GDI AQA+V+         A E      S +I       S ++  +   FTG L  +
Sbjct: 531 NGFGDITAQALVQGLAE----NAAEMRSLVDSGTIELEAVVSSGKLSGRSFCFTGELS-V 585

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +R +A++ V  LG    + + +    ++    ++  SK +KA  LG+ +++E  F  L+
Sbjct: 586 KRSEAEQAVKALGGTTKSSVVKGLSYLVTNDTESGSSKNKKAAGLGIPVIDEAAFWELV 644


>gi|163784741|ref|ZP_02179548.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879989|gb|EDP73686.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 414

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 156/419 (37%), Positives = 227/419 (54%), Gaps = 32/419 (7%)

Query: 2   KKRQL--IPIEAL-SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           K RQL  I IE L + E A K ++ L + I YHD  YY  + P+I D EYD L     +I
Sbjct: 13  KTRQLLKISIEDLKTKEDAEKIINDLREVIKYHDWKYYVLANPVISDYEYDKLFHLLVSI 72

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
              +P+L  +   + P  ++   +     KV H  P LSLE  +N EDLR F  R+    
Sbjct: 73  EKKYPELITA---DSPTQRVPSGLIKEFPKVKHLAPMLSLENSYNEEDLRDFDRRVKEIT 129

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
                + I +++EPK DG  I + YE   FV  A RGDG  G+D++  ++ I TIP    
Sbjct: 130 GL---DEIEYSVEPKFDGAGIALVYENNLFVRGATRGDGAVGDDITPNLKVIRTIPLSAD 186

Query: 179 LNIPEI--IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235
                I  IE+RGEV I+K  F  +N E +  G   +ANPRNAA+G LR  NP ++  R 
Sbjct: 187 FEKYGIKTIEIRGEVLINKELFKKINQERLEEGLPLFANPRNAAAGSLRLQNPKEVAKRG 246

Query: 236 LNFFVHGLGKTSEIFAKG--------QYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYN 286
           L  FV+ +  T +               E ++ +  LGF      ++       ++ Y N
Sbjct: 247 LEAFVYQITYTVDENENNLLGTKLKKHSESIKMLYELGFKSPYKEIKVCKNIDEVIDYCN 306

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346
           + +  R + PY+IDG+V KV++ SL   LG  +  PRW I++KF  +QA+T+L+D+  Q+
Sbjct: 307 QWQEKRDSYPYEIDGMVVKVNDISLYDTLGATSHHPRWAIAYKFQARQATTKLIDVVFQV 366

Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405
           GRTG +TPV +LEPV IGG ++++ +L NED+IK            +DIR+GD VLV+R
Sbjct: 367 GRTGAITPVGKLEPVEIGGVVVSSVSLINEDFIK-----------EKDIRIGDLVLVER 414


>gi|219127319|ref|XP_002183885.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404608|gb|EEC44554.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 864

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 219/781 (28%), Positives = 352/781 (45%), Gaps = 119/781 (15%)

Query: 19  KELSSLEQEISYHDDCYY--------QYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +EL  L  ++  HD  YY            P   +   D+  R   A   A+      + 
Sbjct: 104 EELVRLASDLRRHDALYYESEMARNSVGRIPPCSN---DSNVR--VAW--AYKPRGTEDA 156

Query: 71  -------PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                  P  P       + +   K  H  P LSL+ +   E+L  ++ RI +     D 
Sbjct: 157 SETFFCRPRRPTPNDATRIVVDRVKRPHVRPMLSLDNVHREEELLAWLERIRKKLTVDDG 216

Query: 124 NS-IFFTLEPKIDGTMITIRYEKG-------KFVYAALRGDGHSGEDVSACIRAIPTIPR 175
            S +    EPK+DG  ++ RYE+         FV+A+ RGDG  G+DV+  ++    +P 
Sbjct: 217 PSSLTILTEPKLDGLSLSCRYEQRQSNTTLYTFVWASTRGDGKQGQDVTHAVQQGNLVPL 276

Query: 176 VL----------SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR 225
            L          S   P+++E+RGE+ +    F +L  E +A     +AN RNAASGIL 
Sbjct: 277 TLDWASLVADPESYTHPKVLEIRGEIVLPTTVFQSLEGEGLA-----FANARNAASGILL 331

Query: 226 RLNP------TDITR-YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ---- 274
           R         +   R  L F+ + +         G  ++ + +  LGF V   V      
Sbjct: 332 RKESITDPVASQALREKLCFYAYDVAGDDGFTVSG-VQLRRVLPTLGFRVPEPVAVTRLR 390

Query: 275 --------ANTFHGIVSYYNEMKSIRSTL-------PYDIDGLVYKVDEFSLQKQLGERA 319
                    N    ++ Y++ M+  R           YD+DG V+KV E  L+  LG+  
Sbjct: 391 LNNTTAWNVNDIQALLKYHHSMQHHRQGKKTSQTYGDYDMDGAVHKVSESDLRIILGQSN 450

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R+PRW I+HKFA   A T LLDI +Q+GRTG LTPVA L+PV + G ++  ATLHN  ++
Sbjct: 451 RAPRWAIAHKFAPLAAVTTLLDITVQVGRTGALTPVAILQPVELAGVVVRRATLHNFAHM 510

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV-----NERHPDAQPFSFPSFC 434
           + +  S   +           VLV+RAG+VIP+VV  I      +    D    +FP  C
Sbjct: 511 QQVLGSTTTIAKE------SSVLVRRAGDVIPQVVQRIAGTDAGSNNGFDTISVAFPETC 564

Query: 435 PICQSRVVRDLNPKTG---KLVAAHRCTGGL-ACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P C S VV D   KT          RC G    C+ + +  + H VSRDA ++ GL + +
Sbjct: 565 PACGSPVVTDEVNKTASKETAGQVLRCGGPQWNCTPRAVGSIAHAVSRDALDVTGLSEAR 624

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK--RRN- 547
           +    +    A  I  P+DIF L +   T   K+  + G+G  S  N   ++     +N 
Sbjct: 625 IMQLIE----AGFISRPSDIFALAKSP-TQLEKLAEMDGWGPKSAQN-LAAVANRIAKNG 678

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI---------IAHNNDDWLSL 598
           ISL RF++SLGIR  G   +  +A  Y S ++F +++               +ND+ +  
Sbjct: 679 ISLSRFVYSLGIRFSGVHSSALIAAAYGSVEDFLKDVEAASTLPIKQVQDQESNDEQVQS 738

Query: 599 IR--------VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----S 645
                        +G ++  ++  F Q+   + A E+L   +          VS      
Sbjct: 739 FARLREETDITKGIGPVLLNSLDTFAQDQELVEAAESLASSILVLADDSAMVVSTLATTG 798

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS-AILSRKTDIIIVGDNPGSKLEKAQQL 704
            +++  +VFTG++ ++ R +A+++   +GA  +   +S+ T +++ G+  G KLE+A++L
Sbjct: 799 PLQDMAVVFTGSISEMSRSEAKKWAKVMGAKSTPGSISKLTGLVVAGEKGGKKLEQAEKL 858

Query: 705 G 705
           G
Sbjct: 859 G 859


>gi|257484998|ref|ZP_05639039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 572

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 166/594 (27%), Positives = 269/594 (45%), Gaps = 116/594 (19%)

Query: 225 RRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS 283
           R+L+      R L F  +GLG+TS   A     +L+ ++  G PV+  ++ AN     + 
Sbjct: 1   RQLDSKITANRPLEFCCYGLGQTSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLD 60

Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343
           YY ++   R TL Y+IDG+V+KV+  + Q++LG RAR PRW I+HKF   +  T LLD++
Sbjct: 61  YYRDIGERRLTLSYEIDGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVE 120

Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403
            Q+GRTG +TPVARL+PV + G ++ NATLHN D +  L            + +GD V++
Sbjct: 121 FQVGRTGAVTPVARLKPVKVAGVMVANATLHNMDEVARLG-----------LMIGDTVII 169

Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL------NPKTGKLVAAHR 457
           +RAG+VIP+VV ++   R  +A+    P  CP+C S V R          +T    A +R
Sbjct: 170 RRAGDVIPQVVQVVAERRPENARAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYR 229

Query: 458 CTGGLACSAQQLERLKHFVSRDAFN----------------------------------I 483
           C G LAC AQ  + + H+VSR A +                                  +
Sbjct: 230 CVGRLACGAQLKQAIIHYVSRRAMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQIIDL 289

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTL------------QRRQQTSTTKIENILG-- 529
           EG  +   +   K+   +    +   I+ L              R   S  +++  L   
Sbjct: 290 EGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV 349

Query: 530 ------------------FGDVSVTNLYDSI----------------NKRRNISLERFIF 555
                             F D    N+ D++                    + +LE  I 
Sbjct: 350 LTYLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLKLQDQGELGAEFAASTTLEGLID 409

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            L I  VG   A+ LA  + + +          A  + DWL + +   + +  A+++ +F
Sbjct: 410 KLHIPSVGPGAAQKLADRFGTLE----------AIISADWLDMRQT--LPEKQAKSVRDF 457

Query: 616 YQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
           + +  +     A+EA LK+        +K V    +  +  V TG+L+++ R  A+E + 
Sbjct: 458 FDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLE 517

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L +   T+
Sbjct: 518 SLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLTELGVTV 571


>gi|148989161|ref|ZP_01820551.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73]
 gi|147925384|gb|EDK76462.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73]
          Length = 374

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 194/370 (52%), Gaps = 13/370 (3%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++GG
Sbjct: 1   MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG  I+
Sbjct: 58  KVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRK-----EVAHPTYICELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F  
Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q + L+
Sbjct: 171 VNQVRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKGLK 228

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   
Sbjct: 229 YLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTV 288

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI
Sbjct: 289 KAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI 348

Query: 380 KGLDASGKVM 389
               +   + 
Sbjct: 349 AEKVSEKTIR 358


>gi|56966058|pdb|1TAE|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
 gi|56966059|pdb|1TAE|B Chain B, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
 gi|56966060|pdb|1TAE|C Chain C, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
 gi|56966061|pdb|1TAE|D Chain D, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
 gi|212374930|pdb|3BA8|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
           Dependent Dna Ligase
 gi|212374931|pdb|3BA9|A Chain A, Structural Basis For Inhbition Of Nad-Dependent Ligase
 gi|212374932|pdb|3BAA|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
           Dependent Dna Ligase
 gi|212374933|pdb|3BAB|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
           Dependent Dna Ligase
          Length = 332

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 118/332 (35%), Positives = 185/332 (55%), Gaps = 10/332 (3%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
           F+LQ +LG   ++PRW I++KF  ++A T L 
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVLE 326


>gi|56966057|pdb|1TA8|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
          Length = 332

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 117/331 (35%), Positives = 185/331 (55%), Gaps = 10/331 (3%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL    
Sbjct: 4   QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + + 
Sbjct: 61  TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+   P  +EVRG
Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTE--PISVEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+   +  R LN F++ +     
Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+E
Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRL 339
           F+LQ +LG   ++PRW I++KF  ++A T +
Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVV 325


>gi|153217072|ref|ZP_01950836.1| DNA ligase [Vibrio cholerae 1587]
 gi|124113902|gb|EAY32722.1| DNA ligase [Vibrio cholerae 1587]
          Length = 330

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 110/335 (32%), Positives = 175/335 (52%), Gaps = 8/335 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         +   F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHS--TFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDIFQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQ 330


>gi|332992914|gb|AEF02969.1| DNA ligase, NAD-dependent [Alteromonas sp. SN2]
          Length = 404

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 128/345 (37%), Positives = 196/345 (56%), Gaps = 10/345 (2%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++EQA+    SL  +I+ ++  YY    P + D++YD   +   +I   FP+L   +  +
Sbjct: 4   TLEQAKARAESLRGQINEYNYQYYVLDAPTVPDAQYDRDMQELISIEKQFPEL---QSVS 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+GG    +  +VTH +P LSL+  ++   L  F  RIY   +  D+  + F+ EP
Sbjct: 61  SPSQKVGGSALSAFEQVTHEVPMLSLDNAFDDVSLLAFEKRIYDRLK--DNKELGFSCEP 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           K+DG  ++I YE G+ V AA RGDG  GE+++  +R I  +P  L   N P  +EVRGEV
Sbjct: 119 KLDGLAVSILYENGEMVRAATRGDGQVGENITTNVRTIANVPLKLRGENYPSRLEVRGEV 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI- 249
           ++ K  F ALND   A   K +ANPRNAA+G LR+L+      R L F+ + LG  +   
Sbjct: 179 FMPKKGFEALNDYQRANDGKVFANPRNAAAGSLRQLDSKVTAKRPLMFYAYSLGVVTPED 238

Query: 250 --FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                     L ++   G P+   +  A    G ++YY  + ++R  LPYDIDG+V+KVD
Sbjct: 239 FELPHHHSARLAQLGEWGIPLCPDIDTAEGGKGCLAYYQRILTLRDDLPYDIDGVVFKVD 298

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
           + S+Q+ LG  AR+PRW I+ KF  ++  T+LLD++ Q+GRTG +
Sbjct: 299 DISVQQTLGFVARAPRWAIAQKFPAQEEITKLLDVEFQVGRTGAM 343


>gi|166711580|ref|ZP_02242787.1| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 590

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 168/605 (27%), Positives = 276/605 (45%), Gaps = 157/605 (25%)

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ML ++R  GFPV++ V       G+++YY  +   R  LP+DIDG+VYK+D+ + Q+++G
Sbjct: 1   MLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKLDDLAGQREMG 60

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN 
Sbjct: 61  FVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNA 120

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  QP+  P+ CP+
Sbjct: 121 DQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPATQPWQMPTQCPV 169

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++    
Sbjct: 170 CGSEIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVD 223

Query: 497 SEDPAFSIRIP------------------ADIFTLQRRQQTSTTKIENIL---------- 528
           S        +                      F  + R+  ++     +           
Sbjct: 224 SGVVQGVADLYLLTVDQLLQLRMISTVESPHAFLREAREHLASGAYAQLEATVVGIGVDL 283

Query: 529 -GFGDVS--------------------------VTNLYDSINKRRNISLERFIFSLGIRH 561
            G  +VS                            NL ++I   R+ +LERF+F+LGI H
Sbjct: 284 AGEREVSQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEH 343

Query: 562 V--------------------------------GAEIARSLAKYYLSYQNFAQEINNIIA 589
           V                                G E+ARSL  ++       + I++++A
Sbjct: 344 VGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLG-HFFDQPGNQKAIDHLLA 402

Query: 590 H------------------NNDDWLSLIRVPLVGDI------------------------ 607
                              +  + L  + +P V  I                        
Sbjct: 403 RKVRIGDTHPPSPKLRGELSLANLLEDLEIPKVTPIRAAQIAAAFGSIDALRNGGPEPLV 462

Query: 608 -------IAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
                  +A+++  +   P N       +  L  +   +    +  +  ++ + +V TGT
Sbjct: 463 EAGVPQSVAESLATWLLVPANDTLAVNAQKKLSALLAMMPEAGEEKTGPLDGQTVVITGT 522

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  
Sbjct: 523 LAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDETRLLAF 582

Query: 718 LQQYN 722
           L ++ 
Sbjct: 583 LGEHG 587


>gi|255067693|ref|ZP_05319548.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256]
 gi|255048034|gb|EET43498.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256]
          Length = 543

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 160/564 (28%), Positives = 258/564 (45%), Gaps = 153/564 (27%)

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
           M+  R +LPY+IDG+V KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIG
Sbjct: 1   MQQKRPSLPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIG 60

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG +TPVARL+PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG
Sbjct: 61  RTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAG 109

Query: 408 EVIPKVVDIIVNERHPDA---------------------------------QPFSFPSFC 434
           +VIP+VV +I   R                                     +P+  P+ C
Sbjct: 110 DVIPEVVRVIFERRPMQETAVSNVSDGLKYQQDDLFAETPSTNQTQSVPLHKPYRLPTHC 169

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC+S + R+         A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++  
Sbjct: 170 PICRSEIEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQL 223

Query: 495 FKSEDPAFSIRIPADIFTLQ----RRQQTSTTK--IENILGFGD---------------- 532
              +     +R  AD++ L     ++ + +  K   EN  G  +                
Sbjct: 224 VAQD----LVRHFADLYRLDIPTLQKMKETADKVSSENENGDAETVSDDLSELNTQNGKK 279

Query: 533 ---VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE------ 583
                  N+   I   +   L RF+F+LGIRHVG   A++LA+ + S ++  +       
Sbjct: 280 QPTKWAENILAGIEASKTPELTRFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILA 339

Query: 584 -------------------------INNIIAHNNDDWLSLIRVP---------------- 602
                                    I+ ++A         + +P                
Sbjct: 340 CLPDIGTVVARSIAHFFAQDAQQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPG 399

Query: 603 -LVGDIIAQAIVE---------------------FYQNPRNICAVEALLKEVSPSIGRHE 640
             + +  AQA+ E                     +    +N   +E L    + +   ++
Sbjct: 400 FKISENKAQALWELAGKSIEGLQTDKALPADWQTWRSETQNAALLENLKTFFAQTSSENQ 459

Query: 641 K-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
           +     +++  +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  G
Sbjct: 460 EATVSDDLNEAVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAG 519

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKLEKA  LGV +++EE+ L +L 
Sbjct: 520 SKLEKANALGVAVLSEEELLTMLD 543


>gi|6573451|pdb|1B04|A Chain A, Structure Of The Adenylation Domain Of An Nad+ Dependent
           Ligase
 gi|6573452|pdb|1B04|B Chain B, Structure Of The Adenylation Domain Of An Nad+ Dependent
           Ligase
          Length = 318

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/328 (35%), Positives = 179/328 (54%), Gaps = 11/328 (3%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA +  + L + ++ +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KV H +P +SL   +   DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
             IDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L    P  +E RGE 
Sbjct: 113 LAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKE--PVSLEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P     R L+ FV+GL     + 
Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  ++ LGF VN   R+      ++++ +E    R  LPY+IDG+V KVD F+
Sbjct: 231 IASHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTR 338
            Q+ LG  A+SPRW I++KF  ++  T 
Sbjct: 291 QQRALGATAKSPRWAIAYKFPAEEVVTT 318


>gi|188576356|ref|YP_001913285.1| DNA ligase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520808|gb|ACD58753.1| DNA ligase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 590

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/605 (27%), Positives = 272/605 (44%), Gaps = 157/605 (25%)

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ML ++R  GFPV++ V       G+++YY  +   R  LP+DIDG+VYK+D+ + Q+++G
Sbjct: 1   MLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKLDDLAGQREMG 60

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN 
Sbjct: 61  FVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNA 120

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++RHP  QP+  P+ CP+
Sbjct: 121 DQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRHPATQPWQMPTQCPV 169

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++    
Sbjct: 170 CGSEIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVD 223

Query: 497 SEDPAFSIRIP------------------ADIFTLQRRQQTSTTKIENILG--------- 529
           S        +                      F  + R+  ++     +           
Sbjct: 224 SGVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQLEATLVGIGVDL 283

Query: 530 ----------------------------FGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
                                              NL ++I   R+ +LERF+F+LGI H
Sbjct: 284 AGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEH 343

Query: 562 V--------------------------------GAEIARSLAKYYLSYQNFAQEINNIIA 589
           V                                G E+ARSL  ++       + I++++A
Sbjct: 344 VGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLG-HFFDQPGNQKAIDHLLA 402

Query: 590 HNN------------------DDWLSLIRVPLVGDI------------------------ 607
                                 + L  + +P V  I                        
Sbjct: 403 RKVRIGDTHPPSPKLRGELRLANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLV 462

Query: 608 -------IAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
                  +A+++  +   P N       +  L  +   +    +  +  ++ + +V TGT
Sbjct: 463 EAGVPQSVAESLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEEKTGPLDGQTVVITGT 522

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  
Sbjct: 523 LAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAF 582

Query: 718 LQQYN 722
           L ++ 
Sbjct: 583 LGEHG 587


>gi|297250739|ref|ZP_06934237.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768]
 gi|296838226|gb|EFH22164.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768]
          Length = 539

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/559 (28%), Positives = 249/559 (44%), Gaps = 149/559 (26%)

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
           M+  R  LPY+IDG+V KV+  + Q++LG  +R+PRW I+HKF  ++  T +  ID+QIG
Sbjct: 1   MQQKRPELPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEETLTVVEAIDVQIG 60

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG +TPVARL+PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG
Sbjct: 61  RTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAG 109

Query: 408 EVIPKVVDIIVNERHPDA---------------------------------QPFSFPSFC 434
           +VIP+VV +I   R                                     +P+  P+ C
Sbjct: 110 DVIPEVVRVIFERRPMQETDVTGLSDGIGHRQDDLFAEAPAANQTQSVPLHKPYRLPTRC 169

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC+S + R+         A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++  
Sbjct: 170 PICRSEIEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQL 223

Query: 495 FKSEDPAFSIRIPADIF-----TLQRRQQTSTTKIENIL----------------GFGDV 533
              +     +R  AD++     TLQ+ ++ +   +  +                      
Sbjct: 224 VAQD----LVRHFADLYRLDIPTLQKMKEAADKTVAELDQMPSEGSSVGASGKHKKQPTK 279

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE---------- 583
              N+   I   +   L RF+F+LGIRHVG   A++LA+ + + +   +           
Sbjct: 280 WAENILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPD 339

Query: 584 ---------------------INNIIAHNNDDWLSLIRVP-----------------LVG 605
                                I+ ++A         + +P                  + 
Sbjct: 340 IGTVVAHSIAHFFAQAEQQAMIDELLAAGVTPQTQAVTIPPARHAEPQRWIARLPDFKIS 399

Query: 606 DIIAQAIVE---------------------FYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           +  AQA+ E                     +   P+N   +E L    +      E    
Sbjct: 400 ENKAQALWELAGKNIEGLQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQG 459

Query: 645 S-----EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           S      +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLE
Sbjct: 460 SDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLE 519

Query: 700 KAQQLGVKIMNEEQFLFLL 718
           KA  LGV +++E + L LL
Sbjct: 520 KANALGVSVLSEAELLTLL 538


>gi|289751694|ref|ZP_06511072.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium
           tuberculosis T92]
 gi|289692281|gb|EFD59710.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium
           tuberculosis T92]
          Length = 409

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 120/430 (27%), Positives = 199/430 (46%), Gaps = 30/430 (6%)

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++    +R  G PV+     A    G+    +     R  + ++IDG+V KVDE +LQ++
Sbjct: 2   HQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRR 61

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  ATLH
Sbjct: 62  LGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLH 121

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   IK            + + +GD V++++AG+VIP+V+  +V  R    + F  P+ C
Sbjct: 122 NASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTC 170

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S +         +  A  RC     C  Q  ER+ H  SR+  +IE LG +     
Sbjct: 171 PECGSPL-----APEKEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVAL 225

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +++     I    ++F L  R    T       G    +   L  +++K +   L R +
Sbjct: 226 LQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVL 281

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +L IRHVG   AR+LA  + S    A    + +A           V  VG  IA A+ E
Sbjct: 282 VALSIRHVGPTAARALATEFGSLDAIAAASTDQLAA----------VEGVGPTIAAAVTE 331

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++    +   V+         +   +++V   +    +V TG+L    R  A+E +   G
Sbjct: 332 WFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARG 391

Query: 675 AVVSAILSRK 684
              +    R+
Sbjct: 392 GKAAGSCRRR 401


>gi|215428469|ref|ZP_03426388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T92]
          Length = 411

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 120/432 (27%), Positives = 199/432 (46%), Gaps = 30/432 (6%)

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++    +R  G PV+     A    G+    +     R  + ++IDG+V KVDE +LQ
Sbjct: 1   TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQ 60

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  AT
Sbjct: 61  RRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQAT 120

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   IK            + + +GD V++++AG+VIP+V+  +V  R    + F  P+
Sbjct: 121 LHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPT 169

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +         +  A  RC     C  Q  ER+ H  SR+  +IE LG +   
Sbjct: 170 TCPECGSPL-----APEKEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGV 224

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +++     I    ++F L  R    T       G    +   L  +++K +   L R
Sbjct: 225 ALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWR 280

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +L IRHVG   AR+LA  + S    A    + +A           V  VG  IA A+
Sbjct: 281 VLVALSIRHVGPTAARALATEFGSLDAIAAASTDQLAA----------VEGVGPTIAAAV 330

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            E++    +   V+         +   +++V   +    +V TG+L    R  A+E +  
Sbjct: 331 TEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVA 390

Query: 673 LGAVVSAILSRK 684
            G   +    R+
Sbjct: 391 RGGKAAGSCRRR 402


>gi|317455470|pdb|3PN1|A Chain A, Novel Bacterial Nad+-Dependent Dna Ligase Inhibitors With
           Broad Spectrum Potency And Antibacterial Efficacy In
           Vivo
          Length = 318

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/322 (32%), Positives = 176/322 (54%), Gaps = 7/322 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAE 332
           LQ +LG  +++PRW I++KF  
Sbjct: 297 LQNELGFISKAPRWAIAYKFPA 318


>gi|317968249|ref|ZP_07969639.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0205]
          Length = 372

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/406 (27%), Positives = 197/406 (48%), Gaps = 39/406 (9%)

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I+ K+  ++A ++LL +  Q+GRTG++TPVA  EPV + G  ++ ATLHN D
Sbjct: 1   TQKAPRWAIALKYPAEEAPSKLLRLSCQVGRTGVITPVAEFEPVPLAGTSVSRATLHNAD 60

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            +  L           D+  GD ++V++AGE+IP+VV ++   R   A+    P  CP C
Sbjct: 61  RLLEL-----------DLHAGDTIVVRKAGEIIPEVVRVLPELRPAAAERLELPHTCPEC 109

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +VR+         AA RC    +C A     L+H+VS+ A +++GLG + ++     
Sbjct: 110 GSELVREEGE------AATRCVNS-SCPAILRGALRHWVSKGALDVDGLGSKLIEQLVDR 162

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +   A ++ L      S  ++ +       S  NL  ++   +     R ++ L
Sbjct: 163 ----GLVGSIAGLYRLDCALLCSLERMGS------KSAENLVAALADSKQQPWHRQLYGL 212

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI HVG   A++LAK + S         ++     +   ++  V  +G  IAQ++ +++ 
Sbjct: 213 GIHHVGEVNAKALAKAFPSAA-------DLSTAATETPEAITAVYGIGAEIAQSLQQWFS 265

Query: 618 NPRNICAV---EALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
              N   +   E L   ++       +    + +  +  V TGTL  + R +AQ  +   
Sbjct: 266 TGANQELLTSLERLGFSLASGDEEQPEPSGPAPLTGQTFVLTGTLPSLSRSQAQALIEAA 325

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  V+  +S+KT  ++ G+  GSKL KA+ LG+ +++E     LL 
Sbjct: 326 GGKVTGSVSKKTSYVVAGEEAGSKLSKAESLGIPVLDEASLQALLA 371


>gi|281358582|ref|ZP_06245061.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548]
 gi|281314930|gb|EFA98964.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548]
          Length = 626

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 166/711 (23%), Positives = 282/711 (39%), Gaps = 108/711 (15%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
             L + I YH+  Y+   +P I D+ YD L R    +     +L           ++   
Sbjct: 14  DELIRLIEYHNRRYWDEGEPEIPDARYDELIRALQKLEPDH-ELVT---------RVYAP 63

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
                 KV H  P LSL+K +++E++ ++  +  R             +EPK DG     
Sbjct: 64  AVAGSGKVRHLRPMLSLDKAYSLEEVLEWAKKFAR------SEDEELLVEPKYDGISAN- 116

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            ++         RGDG  GE+++  +  +                VRGE+ I  +DF  L
Sbjct: 117 -FDGRVLS---TRGDGELGENITDKLPLVEL--ETAGHTGKVDRPVRGELVIRDDDFKTL 170

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
              +   G   Y N RNA +GI+                 GL + +E+  +G        
Sbjct: 171 YSHIRKKGGGVYKNSRNAVAGIM-----------------GLKEIAEMELQG-------- 205

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             +     N V     +  + + + E++     LPY  DG+V K+ + +    LG  A  
Sbjct: 206 AKITLVDYNLVSFRVKYSELAAKWEELRRQLEALPYPQDGIVIKLADSAYSASLGNTAHH 265

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PR  I+ KF   +  TRL+ ++   G+   LTPVA LEPV I G  I  ATLHN   I  
Sbjct: 266 PRGEIAFKFTNIRRETRLIGVEWSFGK-NCLTPVAELEPVEISGTTIRRATLHNIQNILE 324

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
           L            +++GD V V+RAG+VIP +V    +    + +       CP C +++
Sbjct: 325 L-----------GVQIGDTVTVERAGDVIPYIV----SSTPGEERRSPLIEDCPSCGAKL 369

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           VR              C     C   QL+RL    +     IE LG+  L    ++    
Sbjct: 370 VRRGPEL---------CCPNPECPETQLQRLA--AAVRNLGIERLGEPTLRKLMENSG-- 416

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +R   D+F L               GF   S  NL + I K R ++  + + +L I +
Sbjct: 417 --VRHLGDLFELTAMDLLRLD------GFAAKSAANLIEEIQKARIVNDYQLLAALNIPN 468

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV-EFYQNPR 620
           +GA +A+ +  +            +           L  +P +G   A+A+V E      
Sbjct: 469 IGANVAKVIFSH-----------TDFAGLRRMSEEELSAIPGIGPERAKALVSELAAQSE 517

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
            +  +   ++ +  +    E           + FTG + + +R   ++  T  G   +  
Sbjct: 518 YLDELLGAVRLIHAAAPAAEIP--------TVCFTGKMPE-KRSYYEKLATAHGYRSADD 568

Query: 681 LSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           ++    +++  D      KL+KA +LGVK+++ ++FL +L   +  +   D
Sbjct: 569 VTSSLSLLVAADPAENSGKLKKAARLGVKVVSLDEFLSMLSPASAPIAEAD 619


>gi|325989607|ref|YP_004249306.1| DNA ligase [Mycoplasma suis KI3806]
 gi|323574692|emb|CBZ40348.1| DNA ligase [Mycoplasma suis]
          Length = 590

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 167/607 (27%), Positives = 283/607 (46%), Gaps = 64/607 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL-FKVTHSI 93
           YY    P + D  YD   ++  A+             +    ++G   + S  FK  H  
Sbjct: 20  YY-KGVPDLPDDVYDFKLKKLRALGG-----------DIEQTQVGHVYSESKKFKKEHLE 67

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPKIDGTMITIRYEKGKFVYA 151
           P LSL   +N E+L  F   I +  ++ +    +  F +EPKIDG  I+++Y+KG+ + A
Sbjct: 68  PMLSLNNAFNQEELCLFFDSIEKTLKQNNRPYKNNEFFVEPKIDGMSISLQYKKGELIEA 127

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEVYISKNDFLALNDEMIAVG 209
             RGDG  GED+   I  I +IP+ + L    PE I VRGE++I K+DF  + +E     
Sbjct: 128 LSRGDGIKGEDLFEPILRINSIPKKIKLPESFPEEILVRGEIFILKSDFKKIQEESSEKR 187

Query: 210 RKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS---EIFAKGQYEMLQKMRCLG 265
            K ++N RN  +G LR  +   I+ + L+F  + +   S   E   K Q +M++ +  LG
Sbjct: 188 IKTFSNARNFVAGTLRLKDFEQISDKKLSFIAYRIIPVSKEQEFPVKTQEQMIRTLEELG 247

Query: 266 FPVNN-GVRQA-----NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           F        +            + +  +   ++  +    DGLV K++     + +G  A
Sbjct: 248 FTTPPKEYSKTIIGNRANLDIFLDFIGQFGEVKDEIDIPNDGLVIKLNSLEDHEIIGSTA 307

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           + P+W I++K+      T+LL I++++GR+G +T + +LEP+ + G+ I   +LHN D I
Sbjct: 308 KFPKWAIAYKYPSLVKKTKLLKIELKVGRSGRITYIGKLEPIELKGSQIECVSLHNFDNI 367

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           K L           D+R G  V V ++GEVIP++   I  E + +  P+  P+ CP C S
Sbjct: 368 KKL-----------DLREGSIVEVCKSGEVIPQI---IFAESNSELPPYELPTECPSCSS 413

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +V       G+      C     C  Q++ ++ +F S+ A NIEGL +  ++       
Sbjct: 414 TLVF------GEGDKLQYCRNK-DCWEQKISKIVYFCSQQAVNIEGLSRGIIEKLVNK-- 464

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +    DI++L+ ++Q   +  +  L   +     L  SI + +  S ++ +  LGI
Sbjct: 465 --GFLTNILDIYSLKEKEQEIYSSKD--LKIKEKLFKKLVTSIEESKKASPQKILIGLGI 520

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            H+G E A+ L K + S +             N D  S + VP VG     A+  + ++ 
Sbjct: 521 DHIGGEAAKLLLKKFSSLEELF----------NSDLESKLNVPKVGPKSGYALENWLKDE 570

Query: 620 RNICAVE 626
            N   VE
Sbjct: 571 DNKKLVE 577


>gi|325973164|ref|YP_004250228.1| DNA ligase [Mycoplasma suis str. Illinois]
 gi|323651766|gb|ADX97848.1| DNA ligase [Mycoplasma suis str. Illinois]
          Length = 590

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 167/607 (27%), Positives = 282/607 (46%), Gaps = 64/607 (10%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL-FKVTHSI 93
           YY    P + D  YD   ++  A+             +    ++G   + S  FK  H  
Sbjct: 20  YY-KGVPDLPDDVYDFKLKKLRALGG-----------DIEQTQVGHVYSESKKFKKEHLE 67

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPKIDGTMITIRYEKGKFVYA 151
           P LSL   +N E+L  F   I +  ++ +    +  F +EPKIDG  I+++Y+KG+ + A
Sbjct: 68  PMLSLNNAFNQEELCLFFDSIEKTLKQNNRPYKNNEFFVEPKIDGMSISLQYKKGELIEA 127

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEVYISKNDFLALNDEMIAVG 209
             RGDG  GED+   I  I +IP+ + L    PE I VRGE++I K+DF  + +E     
Sbjct: 128 LSRGDGIKGEDLFEPILRINSIPKKIKLPESFPEEILVRGEIFILKSDFKKIQEESSEKR 187

Query: 210 RKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS---EIFAKGQYEMLQKMRCLG 265
            K ++N RN  +G LR  +   I+ + L+F  + +   S   E   K Q +M++ +  LG
Sbjct: 188 IKTFSNARNFVAGTLRLKDFEQISDKKLSFIAYRIIPVSKEQEFPVKTQEQMIRTLEELG 247

Query: 266 FPVNN-GVRQA-----NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           F        +            + +  +   ++  +    DGLV K++     + +G  A
Sbjct: 248 FTTPPKEYSKTIIGNRANLDIFLDFIGQFGEVKDEIDIPNDGLVIKLNSLEDHEIIGSTA 307

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           + P+W I++K+      T+LL I++++GR+G +T + +LEP+ + G+ I   +LHN D I
Sbjct: 308 KFPKWAIAYKYPSLVKKTKLLKIELKVGRSGRITYIGKLEPIELKGSQIECVSLHNFDNI 367

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           K L           D+R G  V V ++GEVIP++   I  E + +  P+  P+ CP C S
Sbjct: 368 KKL-----------DLREGSIVEVCKSGEVIPQI---IFAESNSELPPYELPTECPSCSS 413

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +V       G       C     C  Q++ ++ +F S+ A NIEGL +  ++       
Sbjct: 414 TLVF------GGGDKLQYCRNK-DCWEQKISKIVYFCSQQAVNIEGLSRGIIEKLVNK-- 464

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +    DI++L+ ++Q   +  +  L   +     L  SI + +  S ++ +  LGI
Sbjct: 465 --GFLTNILDIYSLKEKEQEIYSSKD--LKIKEKLFKKLVTSIEESKKASPQKILIGLGI 520

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            H+G E A+ L K + S +             N D  S + VP VG     A+  + ++ 
Sbjct: 521 DHIGGEAAKLLLKKFSSLEELF----------NSDLESKLNVPKVGPKSGYALENWLKDE 570

Query: 620 RNICAVE 626
            N   VE
Sbjct: 571 DNKKLVE 577


>gi|145627934|ref|ZP_01783735.1| DNA ligase [Haemophilus influenzae 22.1-21]
 gi|144979709|gb|EDJ89368.1| DNA ligase [Haemophilus influenzae 22.1-21]
          Length = 346

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 140/381 (36%), Positives = 221/381 (58%), Gaps = 38/381 (9%)

Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398
           + D++ Q+GRTG +TPVA+LEPV + G  ++NATLHN D I+ L+           I +G
Sbjct: 1   MNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLN-----------IAIG 49

Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           D V+++RAG+VIP+++ ++   R  +A+P  FP+ CP+C S+++R          A  RC
Sbjct: 50  DTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIEGE------AVARC 103

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           TGGL C+AQ+ E LKHFVSR A +I+G+G + ++     E     I  PAD+F L     
Sbjct: 104 TGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRE----LIHTPADLFKLD---L 156

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
           T+ T+   +   G  S  N  +S+   ++ +L RFIF+LGIR VG   A +LA ++ +  
Sbjct: 157 TTLTR---LERMGAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLD 213

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIG 637
                     A  + +   L +VP VG+++A  I  F++   N+  VE L+ + V     
Sbjct: 214 ----------ALKDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETV 263

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
             ++   +  ++K +V TGTL ++ R++A+  + QLGA VS  +S KTD +I GD  GSK
Sbjct: 264 EVKEASENLFKDKTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSK 323

Query: 698 LEKAQQLGVKIMNEEQFLFLL 718
           L KAQ+L + ++ EE+FL  +
Sbjct: 324 LAKAQELNITVLTEEEFLAQI 344


>gi|312601241|gb|ADQ90496.1| DNA ligase [Mycoplasma hyopneumoniae 168]
          Length = 559

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/604 (29%), Positives = 287/604 (47%), Gaps = 72/604 (11%)

Query: 148 FVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
            + A  RGDG  GE+V      I    IP+ +  N  E +EVRGE+YI  + F +L  E 
Sbjct: 1   MIKALTRGDGVFGENVLVNALKINDEFIPKKI--NYLEDLEVRGEIYIDNSTFASLQLET 58

Query: 206 IAVGRKPYANPRNAASGILRR-------LNPTDIT--------RYLNFFVHGLGKTSEIF 250
                K + NPRNAASGILRR       ++   I         RYL  F + L    +  
Sbjct: 59  -----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKSFFYTLVNPEKHK 113

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++ +  +R LGF VN   ++ +    + ++ + +K  R  L Y+IDG+V KV+EFS
Sbjct: 114 INSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYNIDGVVVKVNEFS 173

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           + ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T  A++EPV + G+ I++
Sbjct: 174 IYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKIEPVTLAGSKISS 233

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A L N  YI+ L            + +   V +K+AGE+IP+++  + N        FS 
Sbjct: 234 AILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVHN---YPKTNFSV 279

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP C S +V        +      C     C    L+++ HF S++A NIE L +++
Sbjct: 280 VKNCPKCNSELV------NSESGLDQFCQNQF-CPEIILQKIVHFCSKNALNIESLAQKR 332

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI----------LGFGDVSVTNLYD 540
           +  F +       I    DIF L+ + +    ++ N                 S+  L +
Sbjct: 333 IKKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQSMQIKSIMKLLN 388

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            + K +NI   R IF LGIR+VG + A+ L++Y  +         N++ +  D       
Sbjct: 389 EVEKAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNISELRNLDFNLLKNQYD------- 441

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
               G +I +++++++ N +N   +  L             N S+         +G L K
Sbjct: 442 ---FGPVIIESLIDYFNNQKNSEQLNCLETVGFSFKTTFLTNQSN--SWASFAISGKLSK 496

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R +    + + GA     L++KTD +++G + GSK+EKA++ G+KI+NE QF  L++ 
Sbjct: 497 P-RDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIKIINEVQFFDLIKN 555

Query: 721 YNTT 724
              T
Sbjct: 556 SKKT 559


>gi|34764322|ref|ZP_00145154.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27885904|gb|EAA23248.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 455

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/475 (30%), Positives = 239/475 (50%), Gaps = 41/475 (8%)

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
           +E+RGEV +   +F  LN+E +  G + +ANPRNAASG LR+L+   +  R L+ + + L
Sbjct: 1   MEIRGEVVLPLANFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFL 60

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            +  ++  K   E ++ +  +G           T   I    +  +  R  LPY+ DGLV
Sbjct: 61  VEADKLGLKSHSESIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLV 120

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVDE +L  ++G  +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V +
Sbjct: 121 IKVDEINLWNEIGYTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVEL 180

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  A+LHN   I+            +DIR+GDRV +++A E+IP+VV  I  +R  
Sbjct: 181 SGSKVKRASLHNISEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKSIKEDRTG 229

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           + +    P  CP+C  ++ R+      + +   +C     C A+    +++FVSRDA NI
Sbjct: 230 NEKVIEEPINCPVCNHKLERE------EGLVDIKCVNE-ECPAKVQGEIEYFVSRDALNI 282

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GLG + ++ F         I+   DI+ L+  ++     +ENI   G  S+ NL +SI 
Sbjct: 283 MGLGSKIVEKFID----LGYIKTVVDIYDLKNHREA----LENIDKMGKRSIENLLNSIE 334

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + +N   ++ I++LGI  +G   ++ LAK             NI    N  +  L  +  
Sbjct: 335 ESKNRDYDKVIYALGIAEIGKVTSKILAK----------ASKNIDKLMNMTFEELTSIEG 384

Query: 604 VGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVF 654
           +G I A  I+ F++  +N   +    E  LK        + +N++     KK + 
Sbjct: 385 IGXIAANEIIAFFKKEKNQKIIESLKEKGLKFEIKESETNVQNINPNFAXKKFLI 439


>gi|242279308|ref|YP_002991437.1| DNA ligase (NAD(+)) [Desulfovibrio salexigens DSM 2638]
 gi|242122202|gb|ACS79898.1| DNA ligase (NAD(+)) [Desulfovibrio salexigens DSM 2638]
          Length = 614

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/713 (23%), Positives = 290/713 (40%), Gaps = 108/713 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   KE+  L   +  H++ Y +   P I D+ YD L  +   +    P L        
Sbjct: 1   MKNKNKEIKDLVALLEKHNEAY-RRGMPTISDARYDELTEQLRDLDPENPFLTN------ 53

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
               +  E      +V H  P LS EK +  E+L +F++R+ +  +      + + + PK
Sbjct: 54  ----VEPENFSEKVEVRHPRPMLSTEKAYTTEELERFVSRVEKEAKAMGIKEVTYRITPK 109

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACI-RAIPTIPRVLSLNIPEIIEVRGEVY 192
           +DG     R +   F   A RG+G  G ++S+   + +  +            +  GE+ 
Sbjct: 110 LDGLAA--RDDGKVF---ATRGNGEVGYEISSAFTKGVVAV--------GGRGQGVGEIV 156

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
            S   F              + +PRN   GI+      + ++                  
Sbjct: 157 CSLEYF-------DEHLANSFEHPRNMVVGIITSDKVNEASK------------------ 191

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK-SIRSTLPYDIDGLVYKVDEFSL 311
              + LQ       P +   ++      +VS   E+   +     Y +DG+V +V + +L
Sbjct: 192 ---QALQDEAVRFVPYSTLPKKVVNGEELVSRVWEITDELWEAADYPLDGMVAEVTDTAL 248

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  A   RW I+ K   + A T +  I  Q+GR G +TPV  ++PV++ GA I N 
Sbjct: 249 QERLGATAHHYRWQIAIKKKGESAVTEVEGIRWQVGRMGAVTPVMEVKPVSVSGATIRNV 308

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           T HN   ++              I +G  + + R+GEVIPK+ ++I       AQ    P
Sbjct: 309 TAHNAGMLRDQS-----------IGIGATIRIIRSGEVIPKLEEVIK-----PAQEVELP 352

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +    +          +C    +C A+  +RL+++  +   N +  GK+ +
Sbjct: 353 AECPSCGAELFWQND--------FLKCP-DFSCPARVEQRLEYWF-KTLGNADWFGKKTI 402

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS--INKRRNIS 549
               K+   +                 T        LGFG V  TNL ++  I+K +   
Sbjct: 403 AKLVKAGHNSL------------ESVYTMAEDDFQKLGFGPVQSTNLAEALYISKTKETD 450

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+ + GI  +G   +R L  Y+            +    N     LI +   GDI +
Sbjct: 451 DWRFLAAFGIPDLGKADSRKLLGYF-----------KLEDVVNVKQEQLIELHGFGDITS 499

Query: 610 QAIVEFYQN--PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            ++ E         +  +E         +    +++ S I  K +VFTG +++  R   Q
Sbjct: 500 HSVTEGIAAIKETILHMLEFDFNLRRTPLVSETESMESPITGKGIVFTGKMEQGSREDMQ 559

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V   ++ KTD ++ G   G+ K+E A+  GV+IM E +F+ ++ 
Sbjct: 560 AMARRLGAKVQTSVTGKTDFLVCGSKVGAKKIESAKAKGVEIMKESEFMDIVN 612


>gi|323226774|gb|EGA10965.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 338

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 206/373 (55%), Gaps = 40/373 (10%)

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVARLEPV + G L++NATLHN D I+ L            +R+GD+V+++RAG+
Sbjct: 1   TGAITPVARLEPVQVAGVLVSNATLHNADEIERLG-----------LRIGDKVVIRRAGD 49

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+VV+++++ER  + +P  FP+ CP+C S V R          A  RCTGGL C AQ+
Sbjct: 50  VIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQR 103

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
            E LKHFVSR A +++G+G + +D   + E     +  PAD+F L   + T   ++    
Sbjct: 104 KESLKHFVSRRAMDVDGMGDKIIDQLVERE----YVHTPADLFRLTAGKLTGLDRM---- 155

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G  S  N+ +++ K +  +  RF+++LGIR VG   A  LA Y+ + +       + +
Sbjct: 156 --GPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDEL 213

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSS 645
                      +VP VG ++A  +  F+    N   +    A        +  + + + S
Sbjct: 214 Q----------KVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDS 263

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
               K +V TG+L ++ R  A+  +  +GA V+  +S+KTD++I G+  GSKL KAQ+LG
Sbjct: 264 PFAGKTVVLTGSLSQMSRDDAKARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELG 323

Query: 706 VKIMNEEQFLFLL 718
           + +++E + + LL
Sbjct: 324 ITVIDEAEMIRLL 336


>gi|291060005|gb|ADD72740.1| DNA ligase, NAD-dependent [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 840

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 160/734 (21%), Positives = 292/734 (39%), Gaps = 107/734 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++  A++ +  LE+ I +H D YY  ++  I D  +DAL      +           DP 
Sbjct: 17  AMSTAQRRVQELEKLILHHQDRYYN-AESDISDDAFDALWEELARL-----------DPG 64

Query: 73  GPLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            PL K IG +      K  H +P  S  K  + E    +  +         +    F ++
Sbjct: 65  NPLLKAIGSDSQRDAVKKRHIVPMGSQHKAADEESFSAWAKK---------NALQAFLVQ 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS------LNIPEII 185
            K+DG  + ++YE+G F  A  RG+G  G+DV+A +R +      L+       N+P   
Sbjct: 116 HKLDGVSLELQYERGHFCCALTRGNGIVGDDVTANVRGMRGFVPTLTAEWGPCGNLPFTG 175

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH---- 241
            VRGEV + K+                +AN RN  +GIL+R +    T +L+   +    
Sbjct: 176 GVRGEVIMHKDIHR--------SHYPTHANCRNTVNGILKRKDGRGRT-HLHIVCYDAVP 226

Query: 242 ---GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
              G   T  +    + E L  +   GF V     +      +V+  +E+   R  LPY 
Sbjct: 227 GTPGKPFTGSLPFADETEKLAWLARQGF-VTVHSHRCANAQEVVALRSEIMRTRELLPYS 285

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDGLV K  +   Q     R   P+  I+ KF+ ++A T L D+  Q       TP+   
Sbjct: 286 IDGLVVKSTDLDFQDAQLPR---PKKQIAFKFSTQEAITTLRDVQWQTS-GVTYTPIGIT 341

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV + G  +  A L N + +  L            +++G  VL+ + GE+IPK+  ++ 
Sbjct: 342 DPVRLAGTTVKRANLCNPNMLTKLC-----------LKIGSHVLISKRGEIIPKIEALVS 390

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
                 AQ    P+ C  C + +            +   C   + C      R+  ++  
Sbjct: 391 T--PAHAQEIHIPTQCTSCNTVLE--------NSGSRLFCPN-VNCPLLSHHRITRWI-- 437

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +   I+ +G + +   F+ +     +R   D++TL             I   G+ +   +
Sbjct: 438 ECLEIKHVGTELIQRLFEEKK----VRRIPDLYTLTCEDLI------EIEHVGNATAKKI 487

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSL-AKYYLSYQNFAQEINNIIAHNNDDWLS 597
            ++I+ ++ I+L+ FI   GI  +G  +   L    + + +         +         
Sbjct: 488 LEAIHHKKEIALQTFIAGFGIEGIGETMGEKLICAGFDTLEKVLHATTETLE-------- 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ--NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
              +   G  +A+++V             ++     +       ++   S +  K   F+
Sbjct: 540 --SIYQFGTELAKSVVTGIARVKDDMCELLDRGFVRI-----LAKQQAESPLRGKSFCFS 592

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMN 710
           G+L+   R      +  LG VV   ++R    +I            KL+K Q + ++I++
Sbjct: 593 GSLRNGDRATI-HRIRALGGVVRTSVTRDLSYLIFESLSQPYRTAQKLKKEQGVALEIIS 651

Query: 711 EEQFLFLLQQYNTT 724
           E++F  LL Q + +
Sbjct: 652 EDEFCRLLDQASAS 665



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SK 697
           + +V + +      F+G L  + R +A   V +LG  V   +S +   ++  D  G   K
Sbjct: 756 DAHVHAPLHGMSFCFSGDLDGMTRAQAIALVQRLGGTVKTAVSTQLTYLVSNDPHGQSRK 815

Query: 698 LEKAQQLGVKIMNEEQFLFL 717
            + A + GV+I++E  FL L
Sbjct: 816 CQNAVRCGVRIISEHVFLAL 835


>gi|15639622|ref|NP_219072.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189025860|ref|YP_001933632.1| DNA ligase [Treponema pallidum subsp. pallidum SS14]
 gi|6014987|sp|O83642|DNLJ_TREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781445|sp|B2S3M4|DNLJ_TREPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3322933|gb|AAC65609.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018435|gb|ACD71053.1| DNA ligase [Treponema pallidum subsp. pallidum SS14]
          Length = 823

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 160/733 (21%), Positives = 291/733 (39%), Gaps = 107/733 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A++ +  LE+ I +H D YY  ++  I D  +DAL      +           DP  
Sbjct: 1   MSTAQRRVQELEKLILHHQDRYYN-AESDISDDAFDALWEELARL-----------DPGN 48

Query: 74  PLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           PL K IG +      K  H +P  S  K  + E    +  +         +    F ++ 
Sbjct: 49  PLLKAIGSDSQRDAVKKRHIVPMGSQHKAADEESFSAWAKK---------NALQAFLVQH 99

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS------LNIPEIIE 186
           K+DG  + ++YE+G F  A  RG+G  G+DV+A +R +      L+       N+P    
Sbjct: 100 KLDGVSLELQYERGHFCCALTRGNGIVGDDVTANVRGMRGFVPTLTAEWGPCGNLPFTGG 159

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH----- 241
           VRGEV + K+                +AN RN  +GIL+R +    T +L+   +     
Sbjct: 160 VRGEVIMHKDIHR--------SHYPTHANCRNTVNGILKRKDGRGRT-HLHIVCYDAVPG 210

Query: 242 --GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
             G   T  +    + E L  +   GF V     +      +V+  +E+   R  LPY I
Sbjct: 211 TPGKPFTGSLPFADETEKLAWLARQGF-VTVHSHRCANAQEVVALRSEIMRTRELLPYSI 269

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DGLV K  +   Q     R   P+  I+ KF+ ++A T L D+  Q       TP+   +
Sbjct: 270 DGLVVKSTDLDFQDAQLPR---PKKQIAFKFSTQEAITTLRDVQWQTS-GVTYTPIGITD 325

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  +  A L N + +  L            +++G  VL+ + GE+IPK+  ++  
Sbjct: 326 PVRLAGTTVKRANLCNPNMLTKLC-----------LKIGSHVLISKRGEIIPKIEALVST 374

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
                AQ    P+ C  C + +            +   C   + C      R+  ++  +
Sbjct: 375 --PAHAQEIHIPTQCTSCNTVLE--------NSGSRLFCPN-VNCPLLSHHRITRWI--E 421

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
              I+ +G + +   F+ +     +R   D++TL             I   G+ +   + 
Sbjct: 422 CLEIKHVGTELIQRLFEEKK----VRRIPDLYTLTCEDLI------EIEHVGNATAKKIL 471

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSL-AKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           ++I+ ++ I+L+ FI   GI  +G  +   L    + + +         +          
Sbjct: 472 EAIHHKKEIALQTFIAGFGIEGIGETMGEKLICAGFDTLEKVLHATTETLE--------- 522

Query: 599 IRVPLVGDIIAQAIVEFYQ--NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
             +   G  +A+++V             ++     +       ++   S +  K   F+G
Sbjct: 523 -SIYQFGTELAKSVVTGIARVKDDMCELLDRGFVRI-----LAKQQAESPLRGKSFCFSG 576

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNE 711
           +L+   R      +  LG VV   ++R    +I            KL+K Q + ++I++E
Sbjct: 577 SLRNGDRATI-HRIRALGGVVRTSVTRDLSYLIFESLSQPYRTAQKLKKEQGVALEIISE 635

Query: 712 EQFLFLLQQYNTT 724
           ++F  LL Q + +
Sbjct: 636 DEFCRLLDQASAS 648



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SK 697
           + +V + +      F+G L  + R +A   V +LG  V   +S +   ++  D  G   K
Sbjct: 739 DAHVHAPLHGMSFCFSGDLDGMTRAQAIALVQRLGGTVKTAVSTQLTYLVSNDPHGQSRK 798

Query: 698 LEKAQQLGVKIMNEEQFLFL 717
            + A + GV+I++E  FL L
Sbjct: 799 CQNAVRCGVRIISEHVFLAL 818


>gi|218460243|ref|ZP_03500334.1| NAD-dependent DNA ligase LigA [Rhizobium etli Kim 5]
          Length = 327

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/308 (44%), Positives = 201/308 (65%), Gaps = 4/308 (1%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P   +G   +++   VTH+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  ---DSPSRHVGAAPSVTFSPVTHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ S
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+    Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD
Sbjct: 245 EMPEDTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304

Query: 308 EFSLQKQL 315
              LQ++ 
Sbjct: 305 SLELQRRP 312


>gi|281307118|pdb|3JSL|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
           Dependent Dna Ligase From Staphylococcus Aureus
 gi|281307119|pdb|3JSL|B Chain B, Crystal Structure Of The Adenylation Domain Of Nad+-
           Dependent Dna Ligase From Staphylococcus Aureus
 gi|281307120|pdb|3JSN|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
           Dependent Dna Ligase From Staphylococcus Aureus
          Length = 318

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 110/322 (34%), Positives = 169/322 (52%), Gaps = 11/322 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQ 334
            ++G   +SPRW I++KF  ++
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEE 312


>gi|218777900|ref|YP_002429218.1| DNA ligase (NAD(+)) [Desulfatibacillum alkenivorans AK-01]
 gi|254781309|sp|B8FKD5|DNLJ_DESAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218759284|gb|ACL01750.1| DNA ligase (NAD(+)) [Desulfatibacillum alkenivorans AK-01]
          Length = 631

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/705 (22%), Positives = 292/705 (41%), Gaps = 105/705 (14%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L Q +  +++ Y +  KP+I D+ YD L  R   IA     L+           +  E  
Sbjct: 17  LGQWLEKYNEAY-RAGKPMISDAHYDLLVERLREIAPDHGFLSA----------VEAETF 65

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               +V H  P LS EK ++ + L +F+ R+Y+   +     + F + PK+DG     R 
Sbjct: 66  ADKREVRHPAPMLSTEKAYDKQSLERFVERVYKEAAQIGVTDVLFQVTPKLDGLAA--RD 123

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           +       A RG+G++G D++        IP+             GE+   ++ F     
Sbjct: 124 DGQIL---ATRGNGYAGYDIT-NALEKGVIPQ------GGRGLGLGEIVAVQSYF----- 168

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                    + +PRN   GI+                     +S++      + L+  + 
Sbjct: 169 --QENLADRFEHPRNMVVGII---------------------SSDVLNISAKQALEDKQV 205

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKS-IRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
              P     +   +   ++    ++   +     Y +DG+V  V    ++  +G  +   
Sbjct: 206 HFVPYATLNKWEGSGKELLENSEKITQDLIQATDYPMDGMVASVMNQDVRDHMGATSHHY 265

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW I+ K   +   T +  I  Q+GRTG +TPV  +EP+ + GA I   T HN   I+  
Sbjct: 266 RWQIAIKAKGETGVTTVNAITWQVGRTGNVTPVLEVEPLKLSGATIRRVTAHNAGRIR-- 323

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     +   VG  + V R+GEVIPK+ +++             P  CP+C++ + 
Sbjct: 324 ---------EKGAGVGASIEVIRSGEVIPKLENVLTPSDDTL-----IPENCPVCETPLE 369

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
            + +          +C   L C A+  +R++H+  R   N +  G + ++        + 
Sbjct: 370 WNND--------FLKCPN-LNCKARVEQRIRHWF-RILGNADWFGIKTVERLVAGGFDSL 419

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL--ERFIFSLGIR 560
                  I+ +      S         FG V   NL ++IN  ++  +   RF+ + GI 
Sbjct: 420 -----EKIYAMTEEDFLSLE-------FGPVQSKNLAEAINLSKSRPVEDWRFLAAFGIS 467

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-P 619
            +G   +R +  ++         +  ++    DD   ++ +   GD+ + +I +  +   
Sbjct: 468 DLGEGDSRKILSFFP--------LEELLDKTRDD---IVALHGFGDVTSISIEKGLKALG 516

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
             I  +  L   + P+  + E +VSS I  K +VFTG+++   R   +E    LGA V  
Sbjct: 517 PTIRHMLDLGFNLQPTPLKSEMDVSSPISGKGVVFTGSMETGSRKDMEENARSLGANVQK 576

Query: 680 ILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            ++ KTD +I G   G+ K +KAQ LGV ++ E+++L L++   +
Sbjct: 577 AVTGKTDYLICGAKVGAKKTQKAQDLGVTVLTEQEYLQLVEGGES 621


>gi|95930744|ref|ZP_01313477.1| DNA ligase (NAD+) [Desulfuromonas acetoxidans DSM 684]
 gi|95133224|gb|EAT14890.1| DNA ligase (NAD+) [Desulfuromonas acetoxidans DSM 684]
          Length = 690

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 165/752 (21%), Positives = 306/752 (40%), Gaps = 123/752 (16%)

Query: 1   MKKRQLIPIEALSIEQAR-KELSSLEQE---ISYHDDC-----------YYQYSKPIILD 45
           + + Q   ++ L+ E    + L +L+Q+   I+  DD            +Y+  +P+I D
Sbjct: 33  LTQAQKDALKQLTFEHLSLQRLFTLQQQPQTITQLDDAELVEFLTIANSFYRDGQPLISD 92

Query: 46  SEYDAL-KRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
            +YD +          + P L          + +  E   +   V      LS EK +  
Sbjct: 93  HDYDHIALAELKTRQPSHPFL----------HTVEPEPKFTGKTVELPARMLSTEKAYTD 142

Query: 105 EDLRKFITRIYRFWQK--KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           ++L  ++ RI++   +  +D   + F + PK+DG      ++ G  +Y   RGDG  G D
Sbjct: 143 KELSDWLKRIHKAANEIGRDPAGLQFRITPKLDGFAA---FDDGDRLY--TRGDGRRGTD 197

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
           ++        +      N        GE+ + ++ F        A   + Y NPRN  + 
Sbjct: 198 ITRAFERGLVV-----ANNQPRGLGAGEIVVQRSYFA-------ANLAQDYENPRNFQAS 245

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           +++                              + L     + +P +    +      ++
Sbjct: 246 VVKEKALEPAV---------------------EQALGNQAVVFYPFSTLPYRVRRSDDLI 284

Query: 283 SYYNEM-KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
                + + +R++L YD+DG+V ++ +  L+  +G      RW I++K  +++A  ++L 
Sbjct: 285 DSVAALSRELRASLDYDMDGIVIEITDDELKTYMGATRHHHRWQIAYKQNQEKAEVKVLQ 344

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           +  Q  R+G + PVA +EP  + GALI  AT H+   ++            + I     +
Sbjct: 345 VVPQTSRSGRVNPVAEVEPTRLSGALIQRATAHHYGMVRD-----------KGIGPDAVI 393

Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
            + R+GEVIPK++D++       A     P+ CP C + +  D +           C   
Sbjct: 394 ELTRSGEVIPKIIDVVK------AVEPQIPASCPSCDTELFWDSD--------YLYCPNN 439

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C AQ    ++HF  R   NI+G G   ++  + +      IR    ++ LQ  Q    
Sbjct: 440 TGCPAQISHTIEHFF-RTLGNIDGFGPATIEKLYTNN-----IRTIDAVYGLQADQLEGM 493

Query: 522 TKIENILGFGDVSVTNLYDSINKRRN--ISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
                  GFG     NL + + + R+  I   RF+ + G+  +G      L  ++   + 
Sbjct: 494 -------GFGPKQSENLVNELQRSRHEVIEDWRFLAAFGVFRMGGGNCERLLGHHRLEEI 546

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-CAVEALLKEVSPSIGR 638
           F                 ++ +    +  A+ +V+ +   R +   ++AL   +  +   
Sbjct: 547 F-----------ELSEEQIVAIEGFAERTAEVVVKGFARIRPLFDKLQALGFNLQRTPLV 595

Query: 639 HEKNVS---SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
            E   S   + I  K LVFTGT+    R   +    +LGA V A ++ KTD ++ GD  G
Sbjct: 596 SELQASGALNPIAGKLLVFTGTMTHGSRDDMKAEAKKLGAKVGASVTGKTDYLVTGDKVG 655

Query: 696 -SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            SKL  A   GV+I+ EEQ+L L+    ++ +
Sbjct: 656 ASKLNAATSKGVEILTEEQYLKLIGTTISSAK 687


>gi|307826049|ref|ZP_07656262.1| DNA ligase (NAD(+)) [Methylobacter tundripaludum SV96]
 gi|307732888|gb|EFO03752.1| DNA ligase (NAD(+)) [Methylobacter tundripaludum SV96]
          Length = 654

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/719 (22%), Positives = 297/719 (41%), Gaps = 104/719 (14%)

Query: 9   IEALSIEQARKEL--SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I  ++ + + KEL    L + +   +  Y +  +P I D++YD +      +    P   
Sbjct: 27  IAQIAKQASPKELTNEQLLEFLQVCNALY-RGGEPFISDADYDFVF--LAELQKRHPHHP 83

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK--KDDN 124
             E        +  E+      VT   P LS EK ++   + K+++R+ +       D +
Sbjct: 84  YLET-------VEPEVVAVGKTVTLPEPMLSTEKTYSQSGIEKWLSRLEKAADDCDVDFS 136

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           ++     PK+DG      Y+ GK +Y   RGDG  G D+S        +         + 
Sbjct: 137 TLMIRATPKLDGYAA---YDDGKLLY--TRGDGRKGTDISRVFERGLKV-----GGNGKR 186

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
            +  GE+ +S+  F   N+ +       + N RN  + I++  +                
Sbjct: 187 GQGAGEIVVSQTYF---NNHLAD----YFENSRNFQASIIKEKD---------------- 223

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
                  +   E +Q    + FP +       T   +++ ++++     +L  YD+DG+V
Sbjct: 224 -----LEQHALEAIQNHAAVFFPFSQLPDWKGTAAEVLADFDQVIEKVYSLVDYDVDGVV 278

Query: 304 YK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           ++ V    ++K LG      RW I++K   + A   ++ +  Q  R+G + PVA L P  
Sbjct: 279 FELVGNEQIKKYLGATRHHHRWQIAYKSNVETAEVIVIKVTPQTSRSGRVNPVAELTPTK 338

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + GA+I+ AT H+   +K L            I VG  + + R+G VIPK+  +I+ +  
Sbjct: 339 LSGAVISRATAHHYGMVKEL-----------GIGVGTLIELTRSGLVIPKIERVIIPKEP 387

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                   P  CP C S +V D +           C     C AQ    ++HF  R   N
Sbjct: 388 ------QIPEHCPSCGSELVWDSD--------YLYCLNTTKCPAQIENTIEHFF-RTLAN 432

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           ++G G++ ++           I     ++ L   Q           GFGD +  NL D +
Sbjct: 433 VDGFGQKTVEKLHACG-----INSVYAVYQLDMEQLQDM-------GFGDKTAQNLMDQL 480

Query: 543 NKRRNISL--ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            + R+ S+   RF+ + GI  +G      L +++     F   + ++I        +   
Sbjct: 481 QRSRSESIEDWRFLGAFGIHRMGLGNCERLLQHHHLMDIFKLTVEDVINIEGFAEKTSAA 540

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
              V + +A+   +F Q        +     +   +   ++   S I  K +VFTG +  
Sbjct: 541 ---VVECLAKIKTDFMQ------IHQLGFNLIQTPLIAEQQQNISPISGKTIVFTGAMIH 591

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            +R    +   +LGA V + ++ KTD ++ G + G +K+  A + GV++++EE +L LL
Sbjct: 592 GKRDDMSKEAKRLGAKVGSSVTGKTDFLVTGSDVGAAKIAAATEKGVRVISEEDYLALL 650


>gi|256829851|ref|YP_003158579.1| DNA ligase (NAD(+)) [Desulfomicrobium baculatum DSM 4028]
 gi|256579027|gb|ACU90163.1| DNA ligase (NAD(+)) [Desulfomicrobium baculatum DSM 4028]
          Length = 615

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 165/710 (23%), Positives = 296/710 (41%), Gaps = 119/710 (16%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKI 78
           E   L + ++ ++D Y +   P++ D++YD L  R   +           DP+ P L+++
Sbjct: 10  EAHRLVERLAEYNDAY-RRGAPLVGDAQYDLLLARLREL-----------DPDHPFLHRV 57

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             E      ++ H +P LS +K +  E+L +F+ R+ +   +   + + + + PK+DG  
Sbjct: 58  EPETFSGKREIRHPVPMLSTDKAYTSEELERFVARVEKEAGEIGVSEVRYRVTPKLDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
              R +   FV    RG+G SG +VS+       IP      +       GE+ I     
Sbjct: 118 --GRDDGTFFV---TRGNGESGYEVSSAFAK-GMIP------LGGRGRGVGEMVI----- 160

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY------LNFFVHGLGKTSEIFAK 252
             L           + +PRN   GI+      ++ +       + F  +        +  
Sbjct: 161 --LQSYFQEHLSDAFEHPRNLVVGIVSSDTVNELAKKALADEAVRFVPYAEL---PSWEG 215

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E+LQ+M  L   ++  V                        Y +DG+V +V +  ++
Sbjct: 216 SGAELLQRMDALTEELSAQV-----------------------DYPLDGMVVEVVDEDVR 252

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + +G  +   RW I+ K   + A T +  +  Q+GRTG +TPV  +EPVN+ GA I   T
Sbjct: 253 RTMGATSHHYRWQIAVKRKGETALTVVTGVVWQVGRTGKVTPVLMVEPVNVSGATIRRVT 312

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
            HN   ++            + +  G  + + R+GEVIPKV  ++V          + P+
Sbjct: 313 AHNAGLLEK-----------KGLGPGAEIEIIRSGEVIPKVEAVLVPAAT------TLPT 355

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + + R+ +           C     C  Q ++ ++H+  +   N +  G++ ++
Sbjct: 356 ACPSCGAALEREND--------FLLCRNE-HCPDQVVQTIEHWF-KTLGNADWFGRKTVE 405

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL-- 550
              +S              +L++  +        + GFG V   NL +++   R   +  
Sbjct: 406 KMVRSGYD-----------SLEKVYELGEDDFRAM-GFGPVLSGNLAEAVYLSRTREVED 453

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+ +LGI  +G   +R L + +            I A           V   G I A 
Sbjct: 454 WRFLAALGIEDLGKGDSRKLLEQFRLQDLLTVSRERIEA-----------VHGFGAITAA 502

Query: 611 AIVEFY-QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I     +    +  +  L   + P+    EK   S +  K +VFTG + +  R   QE 
Sbjct: 503 SIARGLERVGPTLRHLLDLGFRIMPTGAAREKVTDSPLAGKHVVFTGKM-RGSREDMQEE 561

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
               GA+V + ++ KTD +I G+N G SKL KA+Q G  I+ E+++L L+
Sbjct: 562 ARAQGALVQSAVNSKTDFLICGENVGASKLAKARQFGTAILQEDEYLRLI 611


>gi|257482942|ref|ZP_05636983.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011813|gb|EGH91869.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 561

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/617 (19%), Positives = 227/617 (36%), Gaps = 94/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +AR E+++L+Q+++  DD Y++     I D  YD  +++       F      
Sbjct: 25  CPDWPAAKARSEVTNLQQQMAAWDDSYHRQGLSKIPDELYDQARQKLSVWRSCFAISKPE 84

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP      +G         + H +P   + K+ + + ++ ++      W          
Sbjct: 85  SDP--LTTAVG--------PLPHPVPHTGVNKLEDEDSVKAWLKGRNDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ YEKG+ V A  RGDG  G+D ++  R I  IP+ L     + + ++
Sbjct: 125 -IQPKIDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQRL--PHHDSLILQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+Y    D +               N R+  +G+L R   +      +  FV       
Sbjct: 182 GELYWRLTDHIQ--------ATSGSVNARSKVAGMLARQTISPQQADAIGLFVWDWPNG- 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   + L  ++ +GF  +     +   H   + + E    R+ LP+  DG++ +  
Sbjct: 233 ---PTDMAQRLSGLQAMGFEGSEAYTLSLENHVQAARWREH-WYRNPLPFATDGVIMRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  +   +GR+G +TPV  L PV +    
Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR GD+V V  AG  IP++  +I          
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQVAVSLAGLTIPRLDGVISRA------- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                      +  V  + P+               C +Q   RL     +    + G+G
Sbjct: 389 -----------AERVEMIIPQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               D   ++      I    D  TL   +        NI GF + S   L  S+   R 
Sbjct: 438 PGTWDKLIENGQ----IESLLDWMTLNHAELA------NIPGFAERSSAKLLASLQTARE 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              + ++ ++G+   G+                      +   + + W +    P +G  
Sbjct: 488 RPFQTWLKAIGLPPTGSAT-------------LPDNWQELAGRSVEQWQAE---PGIGPG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A  +  F+Q P     
Sbjct: 532 RAAKLRSFFQAPEVQAL 548


>gi|28867612|ref|NP_790231.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|81840358|sp|Q88AK8|LIGB_PSESM RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|28850847|gb|AAO53926.1| DNA ligase, NAD-dependent, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 561

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/617 (20%), Positives = 232/617 (37%), Gaps = 102/617 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64
               S  +A  E+++L+Q+I+  DD Y++     I D  YD  +++ +     F    P 
Sbjct: 25  CPDWSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 84

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +   GPL               H +P   + K+ + +D++ ++      W      
Sbjct: 85  ANPLKTATGPL--------------AHPVPHTGVNKLADEKDVKAWLKGRTDLW------ 124

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PK+DG  +T+ Y++G+ V A  RGDG  G+D +   R I  IP+ L    P+ 
Sbjct: 125 -----IQPKVDGVAVTLVYDEGRLVQAISRGDGTQGQDWTPQARLIKAIPQQL--PQPDS 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243
           + ++GE+Y    D +               N R+  +G+L R   +      +  FV   
Sbjct: 178 LILQGELYWRLTDHVQ--------AASGSVNARSKVAGMLARQTISPQQADAIGLFVWDW 229

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                  A    + L  ++ +GF  +         H   + + E    R+ LP+  DG++
Sbjct: 230 PDGPADMA----QRLAGLQAMGFNHSVAYTHPLENHAQAADWREH-WYRNPLPFATDGVI 284

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            +  +    ++   +A +P W+ + K    QA   +  +   IGRTG + PV  L PV +
Sbjct: 285 MRQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRL 342

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
               ++  +  +    + L           DIR GD + V  AG  IP++  ++   R  
Sbjct: 343 DDRTVSRISAGSLSRWEKL-----------DIRPGDHIAVSLAGLTIPRLDGVV--SRAA 389

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +    S P      +S   +                    C +Q   RL     +    +
Sbjct: 390 ERAEMSVPHASDYHESSCWQ----------------AAPGCESQFRARLVWLSGKKGLAL 433

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G+G    D   +S   +  +    D  TL   +        NI G  + S   L DS+ 
Sbjct: 434 PGVGPGTWDKLIESGHISGLL----DWMTLNHAELA------NIPGLAERSSDKLLDSLQ 483

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R    + ++ ++G+   G                     +++   + + W +    P 
Sbjct: 484 TARERPFQTWLKAIGLPPAGNA-------------KLPDNWHDLAERSVEQWQAE---PG 527

Query: 604 VGDIIAQAIVEFYQNPR 620
           +G   A  +  F+Q+P 
Sbjct: 528 IGPGRAAKLRAFFQDPH 544


>gi|218667573|ref|YP_002425666.1| DNA ligase, NAD-dependent, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|218519786|gb|ACK80372.1| DNA ligase, NAD-dependent, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 609

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/700 (22%), Positives = 266/700 (38%), Gaps = 106/700 (15%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  Y +   PI+ D+EYDAL  R        P L            +  E  
Sbjct: 3   LVHKLEEANAAY-RAGAPIMSDAEYDALVERLRREQPDHPYL----------QTVEPEPE 51

Query: 84  LSL--FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
                 KV H  P LS EK +   DL ++ + + R   +   + + + +  K+DG   + 
Sbjct: 52  NIFGGAKVRHHAPMLSTEKAYTESDLIRYFSAVTRQAARLGMDEVIYAMTAKLDGLAGS- 110

Query: 142 RYEKGKFVYAALRGDGHSGEDV-SACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
             ++   V  A RG+G  GED+  A  R +  +           ++  GE+ + K+ F  
Sbjct: 111 -RDRAHGVDLATRGNGLQGEDIGKAFARGLKIV--------GADVDGPGEIVMPKDFFE- 160

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
             + ++ +G   + +PRN   G +                      ++        + + 
Sbjct: 161 --EHLVPLG---FKHPRNFMVGFV---------------------GADTEKDHHRLVKES 194

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKS-IRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
                 P  N  R       I+     +   IR   PYD DG+V +V+E  L+  LG   
Sbjct: 195 GMAHFVPYANLPRFYADKDTILRDIAYISEDIRKNTPYDTDGIVIEVEEPELRAALGSTN 254

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
              RW I++K   + A T +  +  Q GRTG +TPV  ++PV + GA I  AT HN    
Sbjct: 255 HHHRWQIAYKTKGETAETTVTGVVWQTGRTGRITPVIEIDPVELSGATIRRATAHNFQKA 314

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           +              + VG RV + R+GEVIP ++D++         P   P+ CP C  
Sbjct: 315 RK-----------DGLGVGSRVTMIRSGEVIPFIMDVLSPA------PLDVPTACPCCNG 357

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            V         +      C     C AQ    + HF        +G G + ++    +  
Sbjct: 358 PVE--------EDGEYLTCVNP-HCEAQAEGAISHFFKIMGTA-DGFGPKAVEKIVAAG- 406

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL--ERFIFSL 557
               I     +  + R             GFG     NL   + +  +  +   RF+ + 
Sbjct: 407 ----ITDILAVLDMTRADFEGM-------GFGPGQAENLEREMKRCMSTPVEDWRFLAAF 455

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR++G   +++L             I  + A N      ++ +    +  A  I     
Sbjct: 456 GIRYLGRGDSKAL----------LCAIGGLDALNGITPAQIMAIDGFAEKTALCIAHDLT 505

Query: 618 -NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                I AV   ++    S        +  +    LVFTGT  K  R   +     LGA 
Sbjct: 506 WRWMEIEAVRDRMEAPLVSSAPAGDIGTLPLAGMSLVFTGTFSK-DREVMETQAEALGAK 564

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
           V + ++ KT ++++G+ PG SK  KA  LG  +  E ++L
Sbjct: 565 VQSGVNGKTSVLVIGEKPGASKTTKAAALGTPVWTEAEYL 604


>gi|71042246|pdb|1ZAU|A Chain A, Adenylation Domain Of Nad+ Dependent Dna Ligase From
           M.Tuberculosis
          Length = 328

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 106/332 (31%), Positives = 169/332 (50%), Gaps = 13/332 (3%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +  ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L  
Sbjct: 4   PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61

Query: 68  SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +GG         V H    LSL+  +  ++L  +  RI+           
Sbjct: 62  -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIP 182
            +  E KIDG  +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L+      +P
Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241
           E++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P    R  L    H
Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           GLG          ++    +R  G PV+     A    G+    +     R  + ++IDG
Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
           +V KVDE +LQ++LG  +R+PRW I++K+  +
Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPE 328


>gi|167461915|ref|ZP_02327004.1| NAD-dependent DNA ligase LigA [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 363

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 175/365 (47%), Gaps = 17/365 (4%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +EI+ H+  YY   +P I D EYDAL  R   +       + +  PN P  ++GG
Sbjct: 8   MKILIEEINKHNYHYYTLDEPTITDQEYDALYDRLLKLEKE----SGTVLPNSPTLRVGG 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-------NSIFFTLEPK 133
           ++        H     SL+K  +IE L+ +  R+ +     +            F +E K
Sbjct: 64  DILKGFEPHRHRSRLWSLDKAQSIEVLKNWHNRVQKLVNDYNSKNPSTPLPEPSFAVELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + Y++G  V A+ RG+G  GE + A ++ I ++P  +      +IEV+GE  +
Sbjct: 124 FDGLTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVPLEIPYKE-GLIEVQGEGMM 182

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +     N         P  N RNAA+G LR LNP     R L  F + +G +      
Sbjct: 183 LLSVLDQYNQTAAE----PLKNARNAAAGALRNLNPKVTAERRLTAFFYNVGFSDRKQFM 238

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              EM+  ++   F VN  V+  NT   +     +++  R    + IDG V KV +   +
Sbjct: 239 NHQEMIAFLKENHFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDFLIDGAVIKVTDIRTR 298

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + PRW I++KF  ++ +T L  +  ++GRTG +TPVA++EPV + G  + N T
Sbjct: 299 EVLGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAKVEPVELAGVTVQNCT 358

Query: 373 LHNED 377
           L+N  
Sbjct: 359 LNNIG 363


>gi|82701055|ref|YP_418155.1| putative NAD-dependent DNA ligase [Pseudomonas phage EL]
 gi|82657960|emb|CAG27216.1| putative NAD-dependent DNA ligase [Pseudomonas phage EL]
          Length = 656

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 173/703 (24%), Positives = 294/703 (41%), Gaps = 86/703 (12%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L ++++YH   Y+  ++  I D  YD L++  + +   +P++A   D       I
Sbjct: 8   ERIKYLHEQLTYHAHLYFVENRNEISDEAYDVLEQELNELYDRYPEIAAKFDFYNRPVPI 67

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
                 ++  V    P LSL+K  ++E+   F+       +  D  + F+  E K+DG  
Sbjct: 68  HEPSGETIQPVRFEEPMLSLKKALSVEEADTFL------LKFPDGTNFFY--EEKLDGLA 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACI---------RAIPTIPRVLSLNIPEIIEVRG 189
           + + YE+G+ V  + RG G  GEDV+  I         R + T+P        + + +RG
Sbjct: 120 LELVYEQGQLVSMSTRGSGLVGEDVTHSIVLFDEATLPRTLRTLPDRHK-PQGDRLVIRG 178

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL--NPTDITRYLNFFVHGLGKTS 247
           E YIS   F +LN+          +NPRNA SG +R L  N  +  R   +F      + 
Sbjct: 179 EGYISLERFDSLNETGGKR-----SNPRNAVSGWVRSLPQNQREDIRGTLYFA-AYYASD 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +  K   E+ Q +  LGF V        +   I    N   +IR      +DG+V KVD
Sbjct: 233 RLGTKAYSELRQVLLGLGFGVPE------SRDWIAVSENRRGNIR-----PVDGIVIKVD 281

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F  Q   G  ++ P W I++KF  ++A  ++        R G + PV +  PV I G +
Sbjct: 282 KFKEQDASGNGSKFPHWAIAYKFPAEEALAQVEGCIWNTSRFGRVVPVVQYTPVTIQGVI 341

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
             +A+L N      L            + +GDR+++ R  +VIP++  +   E   +   
Sbjct: 342 CQSASLDNYGSFMDL-----------GLSIGDRIVITRNNDVIPRLNRV---EECGEGDL 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP C S +   +   + +LV    C     C AQ + R      +   +++GLG
Sbjct: 388 LEAPTSCPSCDSLLEVVVGRDSSELV----CNNVAECPAQIVMRCVTTFDKFGLDVDGLG 443

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
             ++    +       ++ PADI TL    +          G   V              
Sbjct: 444 PVKVSELVEK----GWVKQPADILTLPEGIKDQCLTPTTRRGLERVLQEP---------- 489

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           + L RF+ +LGI  +G  +A+ LA       N   E     +  N  +L  +R   VG  
Sbjct: 490 VPLHRFLKALGIPDIGITLAKRLA-------NAIPEGKIEESLTNPKFLQSVRGVSVG-- 540

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA  +V  + +P       AL   ++           ++ +  K+  TG +    R +  
Sbjct: 541 IAYRVVNAFDSPVFKDNFHALKGLLTLQ------YTGTQDDCIKVCITGNI-GPSRGELC 593

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
               + G  +S  L++    +IVGD PG SKL  A + G+ ++
Sbjct: 594 NLFAKEGIELSDRLTQDCAFVIVGDRPGKSKLLIATESGIPML 636


>gi|213967844|ref|ZP_03395991.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
 gi|301382481|ref|ZP_07230899.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062268|ref|ZP_07253809.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato K40]
 gi|302132915|ref|ZP_07258905.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927620|gb|EEB61168.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
          Length = 563

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 126/619 (20%), Positives = 230/619 (37%), Gaps = 106/619 (17%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64
               S  +A  E+++L+Q+I+  DD Y++     I D  YD  +++ +     F    P 
Sbjct: 27  CPDWSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 86

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +   GPL               H +P   + K+ + +D++ ++      W      
Sbjct: 87  ANPLKTATGPL--------------AHPVPHTGVNKLADEKDVKAWLKGRTDLW------ 126

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PK+DG  +T+ Y++G+ V A  RGDG  G+D +   R I  IP+ L    P+ 
Sbjct: 127 -----IQPKVDGVAVTLVYDEGRLVQAISRGDGTQGQDWTPQARLIKAIPQQL--PQPDS 179

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243
           + ++GE+Y    D +               N R+  +G+L R   +      +  FV   
Sbjct: 180 LILQGELYWRLTDHVQ--------AASGSVNARSKVAGMLARQTISPQQADAIGLFVWDW 231

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                  A    + L  ++ LGF  +         H   + + E    R+ LP+  DG++
Sbjct: 232 PDGPADMA----QRLAGLQALGFNHSVAYTHPLENHAQAADWREH-WYRNPLPFATDGVI 286

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            +  +    ++   +A +P W+ + K    QA   +  +   IGRTG + PV  L PV +
Sbjct: 287 MRQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRL 344

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ER 421
               ++  +  +    + L           DIR GD + V  AG  IP++  ++    ER
Sbjct: 345 DDRTVSRISAGSLSRWEKL-----------DIRPGDHIAVSLAGLTIPRLDGVVSRAAER 393

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              + P +       C                          C +Q   RL     +   
Sbjct: 394 AEMSVPHASDYHELSCWQAA--------------------PGCESQFRARLVWLSGKKGL 433

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
            + G+G    D   +S   +  +    D  TL   +        NI G  + S   L DS
Sbjct: 434 ALPGVGPGTWDKLIESGHISGLL----DWMTLNHAELA------NIPGLAERSSDKLLDS 483

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   R    + ++ ++G+   G                     +++   +   W +    
Sbjct: 484 LQTARERPFQTWLKAIGLPPAGNA-------------KLPDNWHDLAERSAQQWQAE--- 527

Query: 602 PLVGDIIAQAIVEFYQNPR 620
           P +G   A  +  F+Q+P 
Sbjct: 528 PGIGPGRAAKLRAFFQDPH 546


>gi|330989493|gb|EGH87596.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 561

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 123/617 (19%), Positives = 228/617 (36%), Gaps = 94/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +AR E+++L+Q+++  DD Y++     I D  YD  +++       F      
Sbjct: 25  CPDWSAAKARSEVTALQQQVAAWDDSYHRQGLSKIPDELYDQARQKLSVWRSCFAISKPE 84

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP      +G         + H +P   + K+ + + ++ ++      W          
Sbjct: 85  SDP--LTTAVG--------PLPHPVPHTGVNKLEDEDSVKAWLKGRKDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ YEKG+ V A  RGDG  G+D ++  R I  IP+ L     + + ++
Sbjct: 125 -IQPKIDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQNLFHR--DSLILQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+Y    D +               N R+  +G+L R   +      +  FV       
Sbjct: 182 GELYWRLTDHIQ--------AISGSVNARSKVAGMLARQTISPQQADAIGLFVWDWPNG- 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   + L  ++ +GF  +     +   H   + + E    R+ LP+  DG++ +  
Sbjct: 233 ---PTDMAQRLAGLQAMGFEGSEAYTLSLENHVQAARWREH-WYRNPLPFATDGVIMRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  +   +GR+G +TPV  L PV +    
Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR GD+V V  AG  IP++  +I          
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQVAVSLAGLTIPRLDGVISRA------- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                      +  V  + P+               C +Q   RL     +    + G+G
Sbjct: 389 -----------AERVEMIIPQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               D   ++      I    D  TL   +        NI GF + S   L  S+   R 
Sbjct: 438 PGTWDKLIENGQ----IESLLDWMTLNHAELA------NIPGFAERSSAKLLASLQTARE 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              + ++ ++G+   G+                      +   + + W +    P +G  
Sbjct: 488 RPFQTWLKAIGLPPTGSAT-------------LPDNWQELAGRSVEQWQAE---PGIGPG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A  +  F+Q P     
Sbjct: 532 RAAKLRSFFQAPEVQAL 548


>gi|330891383|gb|EGH24044.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. mori str.
           301020]
          Length = 561

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 124/617 (20%), Positives = 228/617 (36%), Gaps = 94/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +AR E+++L+Q+++  DD Y++     I D  YD  +++       F      
Sbjct: 25  CPDWPAAKARSEVTALQQQVATWDDSYHRQGLSKIPDELYDQARQKLSVWRSCFAISKPE 84

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP      +G         + H +P   + K+ + + ++ ++      W          
Sbjct: 85  SDP--LTTAVG--------PLPHPVPHTGVNKLEDEDSVKAWLKGRKDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ YEKG+ V A  RGDG  G+D ++  R I  IP+ L     + + ++
Sbjct: 125 -IQPKIDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQRL--PQHDSLILQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGI-LRRLNPTDITRYLNFFVHGLGKTS 247
           GE+Y    D +               N R+  +G+  R+         +  FV       
Sbjct: 182 GELYWRLTDHIQ--------AISGSVNARSKVAGMPARQTISPQQADAIGLFVWDWPNGP 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A    + L  ++ +GF  +     +   H   + + E    R+ LP+  DG++ +  
Sbjct: 234 GDMA----QRLAGLQAMGFEGSEAYTHSLENHVQAARWREH-WYRNPLPFATDGVIMRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV +    
Sbjct: 289 QRPPMQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR GD+V V  AG  IP++  +I          
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQVAVSLAGLTIPRLDGVISRA------- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                      +  V  + P+               C +Q   RL     +    + G+G
Sbjct: 389 -----------AERVEMIIPQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               D   ++      I    D  TL   +        NI GF + S   L  S+   R 
Sbjct: 438 PGTWDKLIENGQ----IESLLDWMTLNHAELA------NIPGFAERSSAKLLASLQTARE 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              + ++ ++G+   G+                      + A + + W +    P +G  
Sbjct: 488 RPFQTWLKAIGLPPTGSAT-------------LPDNWQELAARSVEQWQAE---PGIGPG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A  +  F+Q P     
Sbjct: 532 RAAKLRSFFQAPEVQAL 548


>gi|320326326|gb|EFW82379.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 561

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 120/617 (19%), Positives = 228/617 (36%), Gaps = 94/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +AR E+++L+Q+++  +D Y++     I D  YD  +++ +     F      
Sbjct: 25  CPDWPAAKARSEVTNLQQQMAAWNDSYHRQGISHIPDELYDQARQKLNLWRSCFAVPPPE 84

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP          +  ++  + H +    + K+ +   ++ ++      W          
Sbjct: 85  ADP----------LKTAVGPLPHPVAHTGVNKLADESSVKDWLEGRNDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ YE G+ V A  RGDG  G+D ++  R I TIP+ L    PE   ++
Sbjct: 125 -IQPKVDGVAVTLVYENGQLVQAISRGDGRKGQDWTSQARLIKTIPQHL--PQPESAILQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+Y   +D +               N R+  +G+L R   +      +  FV       
Sbjct: 182 GELYWRLDDHIQ--------SASGSVNARSKVAGLLARQTISPQQADAIGLFVWDWPNGP 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A    + L  ++ +GF  +         +   + + E    R+ LP+  DG++ +  
Sbjct: 234 GDMA----QRLAGLQAMGFEDSAAYSHPLENYAKAARWREH-WYRNPLPFATDGVIMRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  +   +GR+G +TPV  L PV +    
Sbjct: 289 QRPPMQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR GD+V V  AG  IP++  +I          
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQVAVSLAGLTIPRLDGVISRA------- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                      +  V  + P+               C +Q   RL     +    + G+G
Sbjct: 389 -----------AERVEMIIPQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               D   ++      I    D  TL   +        NI GF + S   L  S+   R 
Sbjct: 438 PGTWDKLIENGQ----IESLLDWMTLNHAELA------NIPGFAERSSAKLLASLQTARE 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              + ++ ++G+   G+                      +   + + W +    P +G  
Sbjct: 488 RPFQTWLKAIGLPPTGSAT-------------LPDNWQELAGRSVEQWQAE---PGIGPG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A  +  F+Q P     
Sbjct: 532 RAAKLRSFFQAPEVQAL 548


>gi|331014918|gb|EGH94974.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 561

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 125/619 (20%), Positives = 228/619 (36%), Gaps = 106/619 (17%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64
               S  +A  E+++L+Q+I+  DD Y++     I D  YD  +++ +     F    P 
Sbjct: 25  CPDWSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 84

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +   GPL               H +P   + K+ + +D++ ++      W      
Sbjct: 85  ANPLKTATGPL--------------AHPVPHTGVNKLADEKDVKAWLKGRTDLW------ 124

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PK+DG  +T+ Y +G+   A  RGDG  G+D +   R I  IP+ L    P+ 
Sbjct: 125 -----IQPKVDGVAVTLVYHEGRLAQAISRGDGTQGQDWTPQARLIKAIPQQL--PQPDS 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243
           + ++GE+Y    D +               N R+  +G+L R   +      +  FV   
Sbjct: 178 LILQGELYWRLTDHVQ--------AASGSVNARSKVAGMLARQTISPQQADAIGLFVWDW 229

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                  A    + L  ++ LGF  +         H   + + E    R+ LP+  DG++
Sbjct: 230 PDGPADMA----QRLAGLQALGFNHSVAYTHPLENHAQAADWREH-WYRNPLPFATDGVI 284

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            +  +    ++   +A +P W+ + K    QA   +  +   IGRTG + PV  L PV +
Sbjct: 285 MRQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRL 342

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ER 421
               ++  +  +    + L           DIR GD + V  AG  IP++  ++    ER
Sbjct: 343 DDRTVSRISAGSLSRWEKL-----------DIRPGDHIAVSLAGLTIPRLDGVVSRAAER 391

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              + P +       C                          C +Q   RL     +   
Sbjct: 392 AEMSVPHASDYHELSCWQAA--------------------PGCESQFRARLVWLSGKKGL 431

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
            + G+G    D   +S   +  +    D  TL   +        NI G  + S   L DS
Sbjct: 432 ALPGVGPGTWDKLIESGHISGLL----DWMTLNHAELA------NIPGLAERSSDKLLDS 481

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   R    + ++ ++G+   G                     +++   +   W +    
Sbjct: 482 LQTARERPFQTWLKAIGLPPAGNA-------------KLPDNWHDLAERSAQQWQAE--- 525

Query: 602 PLVGDIIAQAIVEFYQNPR 620
           P +G   A  +  F+Q+P 
Sbjct: 526 PGIGPGRAAKLRAFFQDPH 544


>gi|291545735|emb|CBL18843.1| pseudouridine synthase family [Ruminococcus sp. SR1/5]
          Length = 610

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 125/468 (26%), Positives = 203/468 (43%), Gaps = 46/468 (9%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             K++  L +++      YYQ  + I+ + EYDAL     A+      +      + P  
Sbjct: 166 IHKKMKELGEKLREASRAYYQEDREIMSNVEYDALYDTLSALEKETGIVLA----DSPTV 221

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
            +G E    L K  H  P LSL+K    E LR+FI                  L  K+DG
Sbjct: 222 NVGYEAVEQLPKEEHERPMLSLDKTKEREALREFI------------GEHPTLLSWKLDG 269

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I + YE G+ + A  RG+G  GE ++   R    IP  L ++    + +RGE  I+ +
Sbjct: 270 LTIVLTYENGELIKAVTRGNGIVGEVITNNARVFKNIP--LKISFKGRLVLRGEAIITYS 327

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           DF  +N+ +     K Y NPRN  SG +R+LN      R + F+   L     +  +   
Sbjct: 328 DFEKINETIGDADAK-YKNPRNLCSGSVRQLNNEITAKRNVRFYAFSLVSAEGVDFRNSR 386

Query: 256 EM-LQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           E+  + +   GF V    +  A T    + Y+ E  +   T  +  DGLV   D+ +  +
Sbjct: 387 EVQFRWLNEQGFEVVEYRKVTAETLDEAMDYFAEAVT---TNDFPSDGLVALYDDIAYGE 443

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+ PR  ++ K+A++   TRLL+I+    RTG++ PVA  EPV + G  ++ A++
Sbjct: 444 SLGTTAKFPRNAMAFKWADEMRDTRLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASV 503

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   +K L            + +GD + V +A  +IP++ + +       +     P  
Sbjct: 504 HNISIMKEL-----------KLGIGDTIRVYKANMIIPQIAENLT-----GSGNAPIPHT 547

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
           CP C    V     K    V    C     C A++++    F  +   
Sbjct: 548 CPACGQETV----VKKENDVECLFCVNP-GCPAKKIKSFGLFYKQGCH 590


>gi|330967268|gb|EGH67528.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 560

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 122/617 (19%), Positives = 227/617 (36%), Gaps = 103/617 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64
               S  +A  E+++L+Q+I+  DD Y++     I D  YD  +++ +     F    P 
Sbjct: 25  CPDWSHAKASSEITALQQQIAKWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 84

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +   GPL               H +P   + K+ + +D++ ++      W      
Sbjct: 85  ANPLKTATGPL--------------AHPVPHTGVNKLADEKDVKAWLKGRTDLW------ 124

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PK+DG  +T+ Y++G+ V A  RGDG  G+D +   + I  IP+ L    P  
Sbjct: 125 -----IQPKVDGVAVTLVYDEGRLVQAISRGDGTKGQDWTPQAQLIKAIPQQL--PQPGS 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243
           + ++GE+Y    D +               N R+  +G+L R + +      +  FV   
Sbjct: 178 LILQGELYWRLTDHVQ--------AASGSVNARSKVAGMLARQSISPQQADAIGLFVWDW 229

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                  A    + L  ++ LGF  +             + + E    R+ LP+  DG++
Sbjct: 230 PDGPADMA----QRLAGLQALGFNDSVAYTHPLENQAQAADWREH-WYRNPLPFATDGVI 284

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            +  +    ++   +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV +
Sbjct: 285 MRQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRSGKITPVLELTPVRL 342

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
               ++  +  +    + L           DIR GD + V  AG  IP++  ++      
Sbjct: 343 DDRTVSRISAGSLPRWEKL-----------DIRPGDHIAVSLAGLTIPRLDGVVSRATER 391

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            A         P      +       G             C +Q   RL     +    +
Sbjct: 392 AAMSV------PHSDYHDLSCWQAAPG-------------CESQFRARLVWLSGKKGLAL 432

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G+G    D   +S   +  +    D  TL   +        NI G  + S   L DS+ 
Sbjct: 433 PGVGPGTWDKLIESGHISGLL----DWMTLNHAELA------NIPGLAERSSAKLLDSLQ 482

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R    + ++ ++G+   G                     +++   +   W +    P 
Sbjct: 483 TARERPFQTWLKAIGLPPAGNA-------------KLPDNWHDLAERSVAQWQAE---PG 526

Query: 604 VGDIIAQAIVEFYQNPR 620
           +G   A  +  F+ +P 
Sbjct: 527 IGPGRAAKLRAFFHDPH 543


>gi|289623888|ref|ZP_06456842.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289646918|ref|ZP_06478261.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330869835|gb|EGH04544.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 561

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 120/617 (19%), Positives = 228/617 (36%), Gaps = 94/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +AR E+++L+Q+++  DD Y++     I D  YD  +++ +     F      
Sbjct: 25  CPDWPAAKARSEVTNLQQQMAAWDDSYHRQGISHIPDELYDQARQKLNLWRSCFAVSTPE 84

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP          +  ++  + H +P   + K+ +   ++ ++      W          
Sbjct: 85  ADP----------LKTAVGPLPHPVPHTGVNKLADESSVKDWLKGRKDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ YEKG+ V A  RGDG  G++ ++  R I  IP+ L     + + ++
Sbjct: 125 -IQPKVDGVAVTLVYEKGQLVQAISRGDGRKGQNWTSQARLIKAIPQRL--PQHDSLILQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+Y    D +               N R+  +G+L R   +      +  FV       
Sbjct: 182 GELYWRLTDHIQ--------ATSGSVNARSKVAGMLARQTISPQQADAIGLFVWDWPNG- 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   + L  ++ +GF  +     +   H   + + E    R+ LP+  DG++ +  
Sbjct: 233 ---PTDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWREH-WYRNPLPFATDGVIMRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV +    
Sbjct: 289 QRPPMQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR GD+V V  AG  IP++  +I          
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQVAVSLAGLTIPRLDGVISRA------- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                      +  V  + P+               C +Q   RL     +    + G+G
Sbjct: 389 -----------AERVEMIIPQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALSGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               D   ++      I    D  TL   +        NI GF + S   L  S+   R 
Sbjct: 438 PGTWDKLIENGQ----IESLLDWMTLNHAELA------NIPGFAEHSSAKLLASLQTARE 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              + ++ ++G+   G+                      +   + + W +    P +G  
Sbjct: 488 RPFQTWLKAIGLPPTGSAT-------------LPDNWQELAGRSVEQWQAE---PGIGPG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A  +  F+Q P     
Sbjct: 532 RAAKLRSFFQAPEVQAL 548


>gi|289672514|ref|ZP_06493404.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae
           FF5]
          Length = 561

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 124/613 (20%), Positives = 234/613 (38%), Gaps = 94/613 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +AR E+++L+Q+I+  DD Y++     I D  YD  +++       F   A S
Sbjct: 25  CPDWSAAKARSEITALQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSCF---AVS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PL    G +        H +P   + K+ +   ++ ++      W          
Sbjct: 82  TPESNPLKTAVGPL-------PHPVPHTGVNKLADEGSVKDWLKGRNDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ YE+G+ V A  RGDG  G+D ++  R I TIP+ L     E   ++
Sbjct: 125 -IQPKVDGVAVTLVYEQGQLVQAISRGDGRKGQDWTSQARLIKTIPQQL--PQAESPVLQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE+Y   +D +               N R+  +G+L R   +      +  FV       
Sbjct: 182 GELYWRLDDHIQ--------AASGSVNARSKVAGLLARQTISPQQADAIGLFVWDWPNGP 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A    + L  ++ +GF  +         +   + + E    R+ LP+  DG++ +  
Sbjct: 234 ADMA----QRLAGLQAMGFEDSAAYTHPLQNYAQAARWREH-WYRNPLPFATDGVIMRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    
Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR GD+V V  AG  IP++  ++          
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQVAVSLAGLTIPRLDGVVSRA------- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                      +     + P+               C +Q   RL     +    + G+G
Sbjct: 389 -----------AERADMIIPRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               +   ++      +    D  TL   +        NI GF + S   L DS+   R 
Sbjct: 438 PGTWNTLIENGQIMGLL----DWMTLNHAELV------NIPGFAERSSAKLLDSLQTARE 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              + ++ ++G+   G                     + +   + + W +    P +G  
Sbjct: 488 RPFQTWLKAIGLPPTGGA-------------RLPDNWHELADRSVEQWQAE---PGIGPG 531

Query: 608 IAQAIVEFYQNPR 620
            A  +  F+Q+P+
Sbjct: 532 RAARLRAFFQDPQ 544


>gi|330874636|gb|EGH08785.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 561

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 123/619 (19%), Positives = 229/619 (36%), Gaps = 106/619 (17%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64
               S  +A  E+++L+Q+I+  DD Y+      I D  YD  +++ +     F    P 
Sbjct: 25  CPDWSHAKASSEITALQQQIAKWDDSYHLQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 84

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +   GPL              TH +P   + K+ + +D++ ++      W      
Sbjct: 85  ANPLKTATGPL--------------THPVPHTGVNKLADEKDVKAWLKGRTDLW------ 124

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PK+DG  +T+ Y++G+ V A  RGDG  G+D +   + I  IP+ L       
Sbjct: 125 -----IQPKVDGVAVTLVYDEGRLVQAISRGDGTKGQDWTPQAQLIKAIPQQL--PQLGS 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243
           + ++GE+Y   +D +               N R+  +G+L R + +      +  FV   
Sbjct: 178 LILQGELYWRLSDHVQ--------AASGSVNARSKVAGMLARQSISPQQADAIGLFVWDW 229

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                       + L  ++ LGF  +         H   + + E    R+ LP+  DG++
Sbjct: 230 PDGPADMV----QRLAGLQTLGFNDSVAYTHPLENHAQAADWREH-WYRNPLPFATDGVI 284

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            +  +    ++   +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV +
Sbjct: 285 MRQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRSGKITPVLELTPVRL 342

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ER 421
               ++  +  +    + L           DIR GD + V  AG  IP++  ++    ER
Sbjct: 343 DDRTVSRISAGSLPRWEKL-----------DIRPGDHIAVSLAGLTIPRLDGVVSRATER 391

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              + P +       C                          C +Q   RL     +   
Sbjct: 392 AAMSVPHASDYHDLSCWQAA--------------------PGCESQFRARLVWLSGKKGL 431

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
            + G+G    D   +S   +  +    D  TL   +        NI G  + S   L DS
Sbjct: 432 ALPGVGPGTWDKLIESGHISGLL----DWMTLNHAELA------NIPGLAERSSAKLLDS 481

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   R    + ++ ++G+   G                     +++   +   W +    
Sbjct: 482 LQTARERPFQTWLKAIGLPPAGNA-------------KLPDNWHDLAERSVAQWQAE--- 525

Query: 602 PLVGDIIAQAIVEFYQNPR 620
           P +G   A  +  F+ +P 
Sbjct: 526 PGIGPGRAAKLRAFFHDPH 544


>gi|298489227|ref|ZP_07007245.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156246|gb|EFH97348.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 561

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 120/617 (19%), Positives = 230/617 (37%), Gaps = 94/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +AR E+++L+Q+++  DD Y++     I D  YD  +++ +     F      
Sbjct: 25  CPDWPAAKARSEVTNLQQQMAAWDDSYHRQGISHIPDELYDQARQKLNLWRSCFAVSTPE 84

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP          +  ++  + H +    + K+ +   ++ ++      W          
Sbjct: 85  ADP----------LKTAVGPLPHPVAHTGVNKLADESSVKDWLKGRNDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ YEKG+ V A  RGDG  G+D ++  R I  IP+ LS    + + ++
Sbjct: 125 -IQPKVDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQHLS--HHDSLILQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+Y    D +               N R+  +G+L R   +      +  FV       
Sbjct: 182 GELYWRLTDHIQ--------ATSGSVNARSKVAGMLARQTISPQQADAIGLFVWDWPNG- 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   + L  ++ +GF  +     +   H   + + E    R+ LP+  DG++ +  
Sbjct: 233 ---PTDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWREH-WYRNPLPFATDGVIMRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV +    
Sbjct: 289 QRPPMQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR GD+V V  AG  IP++  +I          
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQVAVSLAGLTIPRLDGVISRA------- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                      +  V  + P+               C +Q   RL     +    + G+G
Sbjct: 389 -----------AERVEMITPQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               D   ++            I +L      + T++ NI GF + S   L  S+   R 
Sbjct: 438 PGTWDKLIENGQ----------IESLLDWMTLNHTELANIPGFAERSSAKLLASLQTARE 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              + ++ ++G+   G+                      +   + + W +    P +G  
Sbjct: 488 RPFQTWLKAIGLPPTGSAT-------------LPDNWQELAGRSVEQWQAE---PGIGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A  +  F+Q P     
Sbjct: 532 RAAKLRSFFQAPEVQAL 548


>gi|50119005|ref|YP_048172.1| NAD-dependent DNA ligase LigB [Pectobacterium atrosepticum
           SCRI1043]
 gi|81827264|sp|Q6DB58|LIGB_ERWCT RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|49609531|emb|CAG72964.1| putative DNA ligase [Pectobacterium atrosepticum SCRI1043]
          Length = 563

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 124/620 (20%), Positives = 226/620 (36%), Gaps = 92/620 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +A KE+ +L Q++   DD YY   K  I D  YD L+ + +  +  F      
Sbjct: 27  CPDWDNTRASKEIDALRQQLEQWDDVYYTEGKSPIEDDVYDQLREQLNQWSQCF------ 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                P   +         K  H +    L+K+ +   L ++I +    W          
Sbjct: 81  ----QP-QNVIPARLPDNGKQPHPVAHTGLKKLSDRVQLVQWIVQREDLW---------- 125

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK V A  RG+G  GED +   R IP IP +LS   P    ++
Sbjct: 126 -VQPKVDGVAVTLVYQHGKLVSAVSRGNGLQGEDWTEKARLIPDIPHLLS-GAPSSFVLQ 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++   D             +   N R+  +G +RR  P+ +   +  FV       +
Sbjct: 184 GELFLKMTDHRQY--------AQGGVNARSIVAGEMRRHQPSPVLSQIGLFVWEWPDGPK 235

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L K++ +GF +      A  +F  +  + +      S LP+  DG+V +  
Sbjct: 236 AMP----ERLDKLKEMGFAMTADYTHAIESFADVEKWRDHW--YHSPLPFVTDGVVIRQT 289

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +     +    W I+ K+        ++D+   +GRTG +  V ++ P+ +    
Sbjct: 290 KEPQGRYWRNTSA--DWAIAWKYPPVHQVAEVVDVAFSVGRTGKVAVVLKISPLKLDDKS 347

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++   + +    K             D+  GDRV V  AG+ IP++ +++   R  +   
Sbjct: 348 VSRVNVGSLSRWK-----------QWDVLPGDRVSVSLAGQGIPRLDNVVW--RGTERPV 394

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P           R                  + C  Q L RL         N+ G+ 
Sbjct: 395 IVSPDEHNFHAFSCFRY----------------SVVCQQQFLARLVWLSGEHGLNLAGMR 438

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                   + +     +        L   Q  +      + G GD    ++Y S+   R 
Sbjct: 439 DGMWLRLMQHD----LLGDVLSWLYLTEAQLNA------VNGMGDKRARDIYMSLQSARQ 488

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL  ++ +LGI    + I+      +L+ Q                     +   +G+ 
Sbjct: 489 KSLSHWLLALGIPVPRSAISALNNVNWLALQQRTA-------------QQWRQFSGIGER 535

Query: 608 IAQAIVEFYQNPRNICAVEA 627
            A+ I+ F  +P  +  +  
Sbjct: 536 RAEEIMAFLNHPIVMELIAR 555


>gi|227327138|ref|ZP_03831162.1| NAD-dependent DNA ligase LigB [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 563

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 126/617 (20%), Positives = 233/617 (37%), Gaps = 90/617 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             +    ++ KE+ +L  ++   DD YY   K  I D  YD L+ + +     F      
Sbjct: 27  CPSWDSTRSGKEIDALRHQLEQWDDVYYTEGKSPIEDDVYDQLREQLNQWLGCF------ 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P  P+            K +H +    L+K+ +   L ++I +    W          
Sbjct: 81  -QPQNPI----PVRLPDNGKQSHPVAHTGLKKLSDRRQLMQWIAQREDLW---------- 125

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK V A  RG+G  GED +  +R IP IP +L+ + P  + ++
Sbjct: 126 -IQPKVDGVAVTLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLT-DAPSSLVLQ 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++        N +    G     N R+  +G +RR  P+ +   +  FV        
Sbjct: 184 GELFLKMT-----NHQQRTQGG---VNARSVVAGEMRRHQPSPVLSQIALFVWEWPDG-- 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   E L+K++ +GF +      A         +         LP+  DG+V +  +
Sbjct: 234 --PKTMPERLEKLKEMGFAMTADYTHAIGSFADAEKWRH-DWYHGPLPFVTDGVVIRQTK 290

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +     +    W I+ K+        + D+   +GRTG +  V +L P+ +    +
Sbjct: 291 EPQGRYWRNTSA--DWAIAWKYPPVNQVAEVADVAFSVGRTGKIAVVLKLNPLKLDDKSV 348

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +   + +    K             D+  GDRV V  AG+ IP++ +++   R  +    
Sbjct: 349 SRVNVGSLSRWK-----------QWDVLPGDRVSVSLAGQGIPRLDNVVW--RGTERPAI 395

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FPS          R                    C  Q L RL          + G+ +
Sbjct: 396 VFPSEHDFHAFSCFRY----------------SAVCQQQFLARLVWLSGDHGLKLAGVRE 439

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                  + +     +       +L   Q  +      + G GD    ++YDS+   R +
Sbjct: 440 GMWLRLIQHD----LLEDVLSWLSLTEAQLNA------VNGMGDKRARDIYDSLQSARQM 489

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R++F+LGI    + I+      +L+ Q +                   +   +G+  
Sbjct: 490 PLSRWLFALGIPVPRSAISALDDVDWLALQQWTA-------------QQWRQFSGIGERR 536

Query: 609 AQAIVEFYQNPRNICAV 625
           A+ I+ F ++P  +  +
Sbjct: 537 AEEIMAFLKHPIVVELI 553


>gi|330812312|ref|YP_004356774.1| DNA ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380420|gb|AEA71770.1| putative exported DNA-ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 557

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 131/619 (21%), Positives = 235/619 (37%), Gaps = 97/619 (15%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P      E+AR E+++L+Q+I   DD Y++  +  + D  YD  + +       F     
Sbjct: 22  PCPDWPTERARAEIAALQQQIDTWDDGYHRLGQSPVADELYDQSRAQLGQWRRCF----N 77

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P    GG       KV H +    LEK+ + + +  ++      W         
Sbjct: 78  LAAPDDPPRSTGG-------KVPHPVVHTGLEKLKDADAVGAWLRGREDVW--------- 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
              +PK+DG  +T+ Y KG+   A  RGDG  G D +   R I  IP+ L  ++   + V
Sbjct: 122 --AQPKVDGVAVTLVYRKGRLHQAISRGDGVQGHDWTTNARKIGAIPQRLHQSV--DLVV 177

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           +GE+Y      +               N R   +G++ R N T     Y++ FV    + 
Sbjct: 178 QGELYWRLEAHVQ--------ASSGSVNARGTMAGLMARSNLTVHDGVYIDLFVWDWPEG 229

Query: 247 SEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +       E +  +  LGF    +  +   T      + +     R+ LP+  DG+V  
Sbjct: 230 PDTLP----ERMAALNALGFADTLDYNQPVRTLADAEQWRDHW--YRTPLPFASDGIVLH 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
                   +   +AR+P W ++ K+   QA   +  +  ++GRTG +TPV  LE + +  
Sbjct: 284 QSRRPPADRW--QARAPFWSVAWKYPYAQALAEVRKVHFKVGRTGRITPVLELERIRLDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             I   ++ +    + +           DIR GDRV +  AG  IP++  +++  R  + 
Sbjct: 342 RWIRRVSVSSLKRWEEM-----------DIRPGDRVAISLAGLTIPRLDSVVL--RSVER 388

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           Q  + P+         +    P  G             C +Q L RL     +    +  
Sbjct: 389 QNLNVPAET---DHHFLSCWQPTPG-------------CESQFLARLGWLSGKQGLALPH 432

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G    +    +      +    D  TL   +        NI GFG+ S T L  S++  
Sbjct: 433 VGPGTWEKLLAAGRLDGLL----DWMTLDAAELA------NIAGFGEHSSTRLLASLHSA 482

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R    E+++ +LG+   G                       +   + + W +      +G
Sbjct: 483 RQRPFEQWLKALGLPPAGEA-------------RLEGPWQALAERSTEQWQAEA---GIG 526

Query: 606 DIIAQAIVEFYQNPRNICA 624
              A  +  F+++P+ +  
Sbjct: 527 PGRAAQLSAFFRDPQVLAL 545


>gi|325662258|ref|ZP_08150873.1| hypothetical protein HMPREF0490_01611 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471510|gb|EGC74731.1| hypothetical protein HMPREF0490_01611 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 402

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 116/438 (26%), Positives = 206/438 (47%), Gaps = 42/438 (9%)

Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343
            ++             DGLV   D+ +  + LG  A+ PR   + K+A++   T L +I+
Sbjct: 1   MFDFFAEHIEENDIPSDGLVLTYDDIAYGQSLGSTAKFPRDSFAFKWADEIRETTLREIE 60

Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403
               RTG++ PVA  +PV + G  ++ A++HN   ++ L+           + +GD + V
Sbjct: 61  WSPSRTGLINPVAIFDPVELEGTTVSRASVHNLSIMEELE-----------LGIGDTIQV 109

Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
            +A  +IP++ + +   R   A     P  CP C           T        CT    
Sbjct: 110 YKANMIIPQIAENLT--RSGMAPV---PECCPACGGETEIRQVSDT----KTLYCTNP-D 159

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523
           C A+ ++    FVSRDA NI+GL +  L+ F         IR  +DIF L+R       +
Sbjct: 160 CGAKHIKAFSLFVSRDAMNIDGLSEATLEKFITR----GFIRHFSDIFHLERY----GEE 211

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
           I ++ GFG+ S  NL DSI K R  +L + I+ LGI ++G   A+ + + +        +
Sbjct: 212 IRSMEGFGEKSYKNLQDSIEKARTTTLPKLIYGLGIANIGLSNAKMICRAF------DYD 265

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           +  ++     D  +L  +  VGD+IA+A V+++    +      LL+EV        +  
Sbjct: 266 VEKMLQA---DVEALNEIQGVGDVIARAFVDYFAVEDHREEFFRLLEEVKIPEEETTQEE 322

Query: 644 SSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEK 700
                    V TG+++    R++ +E +   G  V+  ++ KT+ +I    ++  SK +K
Sbjct: 323 Q-IFAGMNFVITGSVEHFANRNEVKEVIESKGGKVTGSVTSKTNWLINNDVESTSSKNKK 381

Query: 701 AQQLGVKIMNEEQFLFLL 718
           A++LG+ I++E+ FL ++
Sbjct: 382 ARELGIPIISEDTFLKMI 399


>gi|309800538|ref|ZP_07694688.1| DNA ligase [Streptococcus infantis SK1302]
 gi|308115831|gb|EFO53357.1| DNA ligase [Streptococcus infantis SK1302]
          Length = 315

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 103/325 (31%), Positives = 172/325 (52%), Gaps = 13/325 (4%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L + ++ +   YY    P + DSEYD L R    +  A PD      P  P +++
Sbjct: 3   ERMKELVELLNRYATEYYTSDNPSVSDSEYDRLYRELVELEKARPDQVL---PESPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +       + + +  E KIDG  
Sbjct: 60  GGKILDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEL-----DDVTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE+G FV  A RGDG  GE+++  ++ +  IP  LSL     I VRGE Y+ +  F
Sbjct: 115 ISLTYEQGIFVAGATRGDGSIGENITENLKRVKDIP--LSLPEKLDITVRGECYMPRVSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257
             +N      G   +ANPRNAA+G LR+L+   +  R L  F++   + S      Q ++
Sbjct: 173 DQVNQSRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLY--QEASPSTRDSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     A++   + ++  E+   R  LPYDIDG+V K+++ + Q+QLG 
Sbjct: 231 LKHLEQLGFVVNQRRLLAHSMDEVWTFIQEIGRERDQLPYDIDGVVIKINDLAGQEQLGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDI 342
             ++P+W +++KF  ++   +LL +
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAKLLSV 315


>gi|227113300|ref|ZP_03826956.1| NAD-dependent DNA ligase LigB [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 563

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 128/619 (20%), Positives = 231/619 (37%), Gaps = 90/619 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  ++ KE+ +L  ++   DD YY   K  I D  YD L+ + +     F      
Sbjct: 27  CPDWDSTRSGKEIDALRHQLELWDDVYYTEGKSPIEDDVYDQLRDQLNQWLGCF------ 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                P N I   +  +  K  H +    L+K+ +   L ++I      W          
Sbjct: 81  ----QPKNAIPARLPDN-GKQLHPVAHTGLKKLSDRRQLVQWIAPREDLW---------- 125

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK V A  RG+G  GED +  +R IP IP +L+ + P  + ++
Sbjct: 126 -IQPKVDGVAVTLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLT-DAPSSLVLQ 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++   D           G     N R+  +G +RR  P+ +   +  FV        
Sbjct: 184 GELFLKMTDH-----RQRIQGS---VNARSVVAGEMRRHQPSPVLSQIGLFVWEWPDG-- 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   E L+K++ +GF +      A         +       S LP+  DG+V +  +
Sbjct: 234 --PKTMPERLEKLKEMGFAMTADYTHAIGSFADAEKWRHH-WYHSPLPFVTDGVVIRQTK 290

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W I+ K+        ++D+   +GRTG +  V +L P+ +    +
Sbjct: 291 EPQGRYWRNT--LADWAIAWKYPPVHQVAEVVDVAFSVGRTGKVAVVLKLNPLKLDDKSV 348

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               + +    K             D+  GDRV V  AG+ IP++ +++   R  +    
Sbjct: 349 RRVNVGSLSRWK-----------QWDVLPGDRVSVSLAGQGIPRLDNVVW--RSTERPAI 395

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+          R                  +AC  Q L RL         N+ G+ +
Sbjct: 396 VSPNEHDFHAFSCFRY----------------SVACQQQFLARLVWLSGEHGLNLAGVRE 439

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                  + +     +       +L   Q  +      + G GD    ++Y S+   RN+
Sbjct: 440 GMWQRLIQHD----VLEDVLSWLSLTEAQLNA------VNGMGDKRARDIYTSLQSARNM 489

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R++ +LGI  V    + +L                 +A          + P +G+  
Sbjct: 490 PLSRWLLALGIP-VPRSASSALDNV------------GWLALQQWTAQQWRQFPGIGEGR 536

Query: 609 AQAIVEFYQNPRNICAVEA 627
           A+ I+ F ++P  +  +  
Sbjct: 537 AEEIMAFLKHPIVVELIAR 555


>gi|330980117|gb|EGH78327.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 561

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 123/613 (20%), Positives = 232/613 (37%), Gaps = 94/613 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +A  E+++L+Q+I+  DD Y++     I D  YD  +++          LA S
Sbjct: 25  CPDWPTAKAHSEVTALQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSC---LAVS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PL    G +        H +P   + K+ +   ++ ++      W          
Sbjct: 82  SPESNPLKTAVGPL-------PHPVPHTGVNKLADEGSVKDWLKGRNDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ YEKG+ V A  RGDG  G+D ++  R I TIP+ L     E   ++
Sbjct: 125 -IQPKVDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIETIPQQL--PQAESPVLQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+Y   +D +               N R+  +G+L R   +      +  FV       
Sbjct: 182 GELYWRLDDHIQ--------SASGSVNARSKVAGLLARQTISPQQADAIGLFVWDWPNGP 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A    + L  ++ +GF  +         +   + + E    R+ LP+  DG++ +  
Sbjct: 234 ADMA----QRLAGLQAMGFEDSAAYTHPLQNYAQAARWREH-WYRNPLPFATDGVIMRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    
Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR GD+V V  AG  IP++  ++          
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQVAVSLAGLTIPRLDGVVSRA------- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                      +     + P+               C +Q   RL     +    + G+G
Sbjct: 389 -----------AERADMIIPRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               +   ++      +    D  TL   +        NI GF + S   L DS+   R 
Sbjct: 438 PGTWNTLIENGQIIGLL----DWMTLNHAELV------NIPGFAERSSAKLLDSLQTARE 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              + ++ ++G+   G                     + +   + + W +    P +G  
Sbjct: 488 RPFQTWLKAIGLPPTGGA-------------RLPDNWHELADRSVEQWQAE---PGIGPG 531

Query: 608 IAQAIVEFYQNPR 620
            A  +  F+Q+P+
Sbjct: 532 RAARLRAFFQDPQ 544


>gi|146284243|ref|YP_001174396.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri A1501]
 gi|145572448|gb|ABP81554.1| DNA ligase, NAD-dependent, putative [Pseudomonas stutzeri A1501]
          Length = 597

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 134/629 (21%), Positives = 238/629 (37%), Gaps = 98/629 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +AR+E+  L+ +++  DD Y++  + ++ D  YD  + + D     F  +   
Sbjct: 64  CPNWDDARARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCF--VGTG 121

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ PL   GG +        H +    L K+ + + +  +I R    W          
Sbjct: 122 AAPD-PLQDAGGPL-------RHPVRQTGLVKLADEQAVATWIARRRDLW---------- 163

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ Y  G    A  RGDG +G D +A  R +  IP  L+  +P+ + ++
Sbjct: 164 -IQPKIDGVAVTLVYRHGALQQAISRGDGLTGHDWTANARRLAAIPARLA--VPDEVILQ 220

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKT 246
           GE+Y   +  +              A  R   +G +    L+     R +  FV      
Sbjct: 221 GELYWRLDRHVQ--------ASHGSAGARGRVAGAMASNGLDRNTAAR-IGLFVWDWPNG 271

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                      L ++  LGFP      Q         ++ E    R  LP+  DG+V + 
Sbjct: 272 ----PDSMNARLGQLAALGFPDTQAFSQPVETLEHARHWREH-WYRQALPFATDGVVLRQ 326

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++    ++       P W  + K+  ++A T + D++ +IGRTG +TP+ +L PV +   
Sbjct: 327 EQRPPAERWQA---EPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDDR 383

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +   +L + D  + L           D+R GDRV V  AG  IP++  ++   RH +  
Sbjct: 384 RVRMLSLGSLDRWQAL-----------DVRPGDRVAVALAGHSIPQLDSVVW--RHTERA 430

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P + P              +P+     +  R      C  Q L RL     R    +EG+
Sbjct: 431 PVAAP--------------DPRRYHPDSCWR--PAPGCEQQFLARLVWLGGRQGLALEGV 474

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G        ++            +  L    +     +E + G G      L  S  + R
Sbjct: 475 GAGSWQALLEAGL----------LPDLLAWLELDAAALEQVPGIGKARANKLAASFARAR 524

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L +++ +LG+       A+ L          A + + + A +   W +      VG 
Sbjct: 525 QRPLAQWLKALGLP------AKQLPP--------AADWDALAARDLAQWQAEA---GVGP 567

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS 635
             A+ +  F++        E L     P 
Sbjct: 568 ARAKQLQAFFRAAELPALRERLRAVGVPG 596


>gi|251791698|ref|YP_003006419.1| NAD-dependent DNA ligase LigB [Dickeya zeae Ech1591]
 gi|247540319|gb|ACT08940.1| DNA ligase (NAD(+)) [Dickeya zeae Ech1591]
          Length = 560

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 126/620 (20%), Positives = 234/620 (37%), Gaps = 89/620 (14%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P  A S  +A +E++ L Q+++  D+ YY+  +  + D  YD L++        F   
Sbjct: 20  ATPCPAWSSARAEREVTQLGQQLTQWDNAYYEQGRSPVDDQVYDQLRQTLATWQRCF--- 76

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                      +       S  K +H +    L+K+    +L++++ R    W       
Sbjct: 77  ------QSDTERF-AIRLSSTGKQSHPVAHTGLKKLSEPTELKQWVARHDGLW------- 122

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
               ++PKIDG  +T+ YE+GK V A  RG+G  GED +  +R I  +P+ LS  +    
Sbjct: 123 ----VQPKIDGVAVTLVYEQGKLVSAVSRGNGRQGEDWTDKVRQINAVPQALS-GMSGRQ 177

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
             +GE+Y+   +                 N R   +G +RR  P+ +   L  F+     
Sbjct: 178 IFQGELYLPVTEHRQY--------VSGGINARAQVAGEMRRKQPSPLLSRLGVFIWAWPD 229

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                       L K+R +GF +     QA +     + + E +  R+ LP+  DG+V +
Sbjct: 230 GPADMPT----RLAKLREMGFGLTADYTQAISSLEAAAQWRE-RWYRAPLPFVTDGVVLR 284

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
             +    +   +      W ++ K+      T +  +D++IGRTG +T V +L+PV +  
Sbjct: 285 QAKEPAGRYWQDTP--AEWAVAWKYPLMNQVTEVTGVDVEIGRTGRMTVVLQLQPVMLDD 342

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++   L +    +             D+  GDRV +  AG  IP++  ++   R    
Sbjct: 343 KSVSRVNLGSVGRWR-----------QWDVLPGDRVSISLAGLGIPRLDAVVW--RAAVR 389

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +  + P+  P     V   L                  C  Q L RL     R+  ++ G
Sbjct: 390 ESITVPAVSPF---DVFSCLQW-------------SRECQPQFLARLVWMSGRNGLSLSG 433

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           + +       +    A  +        L+  Q  +         F +     +Y  + + 
Sbjct: 434 ISEATWRRLAQRGTLADVVS----WLALEPAQLAAAGD------FNEQQAARIYRQLQQA 483

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R   L R++ +LG+                S   +A E  ++        +   +   +G
Sbjct: 484 RRQPLRRWLLALGLP-------------VPSSARYALEGASLEQLQQRSIVEWQQFSGIG 530

Query: 606 DIIAQAIVEFYQNPRNICAV 625
              AQ I +F  +P  +  +
Sbjct: 531 ARRAQRIRDFLHHPEIVRQL 550


>gi|302186902|ref|ZP_07263575.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae
           642]
          Length = 561

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 121/613 (19%), Positives = 234/613 (38%), Gaps = 94/613 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +AR E+++L+Q+I+  DD Y++     I D  YD  +++       F   A S
Sbjct: 25  CPDWPAAKARSEVTTLQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSCF---AVS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PL    G +        H +P   + K+ +   ++ ++      W          
Sbjct: 82  TPESNPLKTAVGPL-------HHPVPHTGVNKLADEGSVKDWLKGRNDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ YEKG+ V    RGDG +G+D ++  R I  IP+ L     E   ++
Sbjct: 125 -IQPKVDGVAVTLVYEKGQLVQVISRGDGRNGQDWTSQARLIKAIPQQL--PQAESPILQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+Y   +D +               N R+  +G+L R   +      +  FV       
Sbjct: 182 GELYWRLDDHIQ--------AASGSVNARSKVAGLLARQTISPQQADAIGLFVWDWPNG- 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   + L  ++ +GF  +     +   +   + + E    R+ LP+  DG++ +  
Sbjct: 233 ---PADMTQRLAGLQTMGFEDSAAYTHSLENYAQAARWREH-WYRNPLPFATDGVIMRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    
Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR GD++ V  AG  IP++  ++          
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQIAVSLAGLTIPRLDGVVSRA------- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                      +     + P+               C +Q   RL  F  +    + G+G
Sbjct: 389 -----------AERADMIIPRAADFHELSCWQATPGCESQFRARLAWFSGKKGLALPGIG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               +   ++      +    D  TL   +        NI GF + S   L DS++  R 
Sbjct: 438 PGTWNTLIENGQIMGLL----DWMTLNHAELV------NIPGFAERSSAKLLDSLHSARE 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              + ++ ++G+   G                     + +   + + W +    P +G  
Sbjct: 488 RPFQTWLKAIGLPPTGDA-------------RLPDNWHELADRSVEQWQAE---PGIGPG 531

Query: 608 IAQAIVEFYQNPR 620
            A  +  F+Q+P+
Sbjct: 532 RAARLRAFFQDPQ 544


>gi|322612905|gb|EFY09857.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618970|gb|EFY15857.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625253|gb|EFY22080.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630079|gb|EFY26852.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634271|gb|EFY31006.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635828|gb|EFY32537.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642969|gb|EFY39547.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645038|gb|EFY41569.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649862|gb|EFY46285.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653069|gb|EFY49404.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661112|gb|EFY57340.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662399|gb|EFY58612.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667277|gb|EFY63443.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674346|gb|EFY70439.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678446|gb|EFY74507.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680952|gb|EFY76986.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687112|gb|EFY83085.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323198247|gb|EFZ83353.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323200865|gb|EFZ85935.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206619|gb|EFZ91577.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210468|gb|EFZ95354.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216243|gb|EGA00971.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220466|gb|EGA04920.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225330|gb|EGA09564.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228444|gb|EGA12575.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234265|gb|EGA18353.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237250|gb|EGA21317.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244769|gb|EGA28773.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323245856|gb|EGA29846.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250961|gb|EGA34837.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257291|gb|EGA40990.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262215|gb|EGA45776.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264574|gb|EGA48078.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268863|gb|EGA52321.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 561

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 117/630 (18%), Positives = 223/630 (35%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTRHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +      A      +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYTLAVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRER---- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                              P      +         C  Q + RL    SR A  ++G+G
Sbjct: 389 ---------------SKPVPPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPSTGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRDNPQIKALSRWLAAQHIPGFG 560


>gi|204928646|ref|ZP_03219845.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204322079|gb|EDZ07277.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 561

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 119/630 (18%), Positives = 227/630 (36%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTRHPVAHTGVRKLVDRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +      A      +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLAVKNASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVMLDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPSTGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRDNPQIKALSRWLAAQHIPGFG 560


>gi|295095236|emb|CBK84326.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 556

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 126/619 (20%), Positives = 231/619 (37%), Gaps = 97/619 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A +E+++L+ +++  +D Y++     + D  YD L  R       F D    
Sbjct: 20  CPVWSPAKAGQEIAALKAQLTRWNDDYWKQGSSEVSDDVYDRLNARLKQWQRCFHDEPLH 79

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +D           +  +   V H      + K+ + + L +++      W          
Sbjct: 80  DD-----------LPAASGTVKHPFAHTGVHKVESKQALSRWMATQQDLW---------- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK V A  RGDG  GE+ +A  R IP IP+ L+  +     ++
Sbjct: 119 -VQPKVDGVAVTLVYKNGKLVQAISRGDGLQGEEWTAQARMIPAIPQTLAGPL-ANSVLQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R   +G + R       +    F+        
Sbjct: 177 GELFLLREGHIQQ--------RMGGMNARAKVAGAMMRATDRAALKQTGIFIWAWPDG-- 226

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              K     L  +   GF +             + +        +++LP+  DG+V +  
Sbjct: 227 --PKAMKARLSTLAEAGFTLTARYTVPVKNAADVEA--QRTAWFKASLPFATDGIVVRAS 282

Query: 308 EFSLQKQL--GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
                ++   GE +    W+++ K+      T +  I   +GRTG +T +A+LEP+ +  
Sbjct: 283 AEPPGERWLPGEGS----WVVAWKYLPVAQVTEVKAIHFTVGRTGRITAIAQLEPLMLDD 338

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +   +L + +  + L           DI  GD+VLV  AG+ IP++ +++   R+ D 
Sbjct: 339 KRVQRVSLGSVNRWQRL-----------DIAPGDQVLVSLAGQGIPRLDNVVW--RNVDR 385

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                            R   P + +            C  Q   RL    SR A +IEG
Sbjct: 386 -----------------RKPQPPSSRYNGLTCFYASPECMEQFFARLTWLSSRQALDIEG 428

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G+      +++               L + Q T+T       G        L+   N  
Sbjct: 429 VGESGWRTLYQAHR----FEHLFSWLQLTQAQLTATA------GISASHGAALWHQFNLA 478

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     R+I ++GI          LA+  L      +    +I  +  +W     +P VG
Sbjct: 479 RERPFIRWITAMGIP---------LARSTLKAAG-DRTWQALIQRSEAEWRM---LPGVG 525

Query: 606 DIIAQAIVEFYQNPRNICA 624
              A+ IV +   P+    
Sbjct: 526 QEKARQIVNWLHQPQIDAL 544


>gi|167995212|ref|ZP_02576302.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205327077|gb|EDZ13841.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261248887|emb|CBG26741.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996002|gb|ACY90887.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160276|emb|CBW19799.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|321226792|gb|EFX51842.1| DNA ligase, LigB [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323132100|gb|ADX19530.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990588|gb|AEF09571.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 561

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 118/630 (18%), Positives = 225/630 (35%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF   N           +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTNKYTLAVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFS---WLTLTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  N +       L  +  P  G
Sbjct: 531 RAGRVIDWRNNLQIKALSRWLAAQHIPGFG 560


>gi|77461491|ref|YP_350998.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens Pf0-1]
 gi|123772014|sp|Q3K5E7|LIGB_PSEPF RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|77385494|gb|ABA77007.1| putative exported DNA-ligase protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 558

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 130/621 (20%), Positives = 229/621 (36%), Gaps = 97/621 (15%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
                +  +A  E+ +L+Q+I   DD Y++  + +I D  YD  + R +     F     
Sbjct: 23  DCPDWAAARASSEVVALQQQIDRWDDAYHREGRSVIADELYDQSRLRLNQWRQCF----N 78

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P  PL    G        V H +    L+K+ +  D+  ++      W         
Sbjct: 79  LPSPPEPLRTASG-------PVAHPVAHTGLDKLHDAADIATWLRDRQNVW--------- 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +T+ Y  G+   A  RGDG  G+D +A  + I  IP+ L+   P+ + V
Sbjct: 123 --VQPKVDGVAVTLIYRDGRLHQAISRGDGVRGQDWTASAKKIGAIPQQLT--QPQDLLV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           +GE+Y        LN  M A      AN R   +G+L R +   +    +  FV      
Sbjct: 179 QGELYWR------LNGHMQARAGS--ANARATVAGLLGRKDLGAEHAAGIGLFVWDWPHG 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                    E +  +   GFP      +   + +    + +      S LP+  DG+V +
Sbjct: 231 PRDLP----ERITALTQFGFPTTVPYTQAVASLNDAQHWRDHW--YHSPLPFATDGVVLR 284

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
                  ++   +AR P W ++ K+   QA   +  +  +IGRTG +TPV  L PV +  
Sbjct: 285 QSLRPPAERW--QARPPYWAVAWKYPFAQALADVRKVHFKIGRTGRITPVLELSPVMLDD 342

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             I   ++ +    + L           DIR GD+V +  AG  IP++  +++       
Sbjct: 343 RQIKRVSVSSLRRWQEL-----------DIRPGDQVAISLAGLTIPRLDSVVLRS----- 386

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                        +       P      A         C +Q L RL     +    +  
Sbjct: 387 -------------TERADLNVPLASDFHALSCWQPTPGCESQFLARLTWLSGKQGLALPH 433

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G+   +   ++      +    D  TL   +        NI G G+ S   L  S +  
Sbjct: 434 VGRGTWEKLLETGR----LNSLLDWLTLDGPELA------NIAGLGERSSARLLHSFHSA 483

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     +++ +LG+   G                 A     +   N + W +      +G
Sbjct: 484 RQRPFAQWLKALGLPPTGQAT-------------LADSWQALAQRNTEQWQAEA---GIG 527

Query: 606 DIIAQAIVEFYQNPRNICAVE 626
              A  +  F+++P+ +   E
Sbjct: 528 PGRAAQLSAFFRDPQVLTLSE 548


>gi|293413081|ref|ZP_06655749.1| DNA ligase [Escherichia coli B354]
 gi|291468728|gb|EFF11221.1| DNA ligase [Escherichia coli B354]
          Length = 561

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 234/620 (37%), Gaps = 92/620 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHR 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DAMMPPLN----------GAVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L+ FV       +
Sbjct: 180 GEIFLKREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLDVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    N      + LP+  DG+V +  
Sbjct: 232 LM----TDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWK--AKLPFVTDGVVVRAA 285

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+  F ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVFGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRALHQTHR-------FEHIFS---WFLLTPEQLQNTPGIAKSKSAQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++  LS + F Q++       A    +W  
Sbjct: 481 ARKQPFTRWVMAMGIPLTRVALNASDERSWSQLLLSTEQFWQQLPGTGSGRARQVIEWKE 540

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 541 NAQIKKLGSWLAAQQITGFE 560


>gi|166226374|sp|A4VRF3|LIGB_PSEU5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 556

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 134/629 (21%), Positives = 238/629 (37%), Gaps = 98/629 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +AR+E+  L+ +++  DD Y++  + ++ D  YD  + + D     F  +   
Sbjct: 23  CPNWDDARARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCF--VGTG 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ PL   GG +        H +    L K+ + + +  +I R    W          
Sbjct: 81  AAPD-PLQDAGGPL-------RHPVRQTGLVKLADEQAVATWIARRRDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ Y  G    A  RGDG +G D +A  R +  IP  L+  +P+ + ++
Sbjct: 123 -IQPKIDGVAVTLVYRHGALQQAISRGDGLTGHDWTANARRLAAIPARLA--VPDEVILQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKT 246
           GE+Y   +  +              A  R   +G +    L+     R +  FV      
Sbjct: 180 GELYWRLDRHVQ--------ASHGSAGARGRVAGAMASNGLDRNTAAR-IGLFVWDWPNG 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                      L ++  LGFP      Q         ++ E    R  LP+  DG+V + 
Sbjct: 231 ----PDSMNARLGQLAALGFPDTQAFSQPVETLEHARHWREH-WYRQALPFATDGVVLRQ 285

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++    ++       P W  + K+  ++A T + D++ +IGRTG +TP+ +L PV +   
Sbjct: 286 EQRPPAERWQA---EPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDDR 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +   +L + D  + L           D+R GDRV V  AG  IP++  ++   RH +  
Sbjct: 343 RVRMLSLGSLDRWQAL-----------DVRPGDRVAVALAGHSIPQLDSVVW--RHTERA 389

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P + P              +P+     +  R      C  Q L RL     R    +EG+
Sbjct: 390 PVAAP--------------DPRRYHPDSCWR--PAPGCEQQFLARLVWLGGRQGLALEGV 433

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G        ++            +  L    +     +E + G G      L  S  + R
Sbjct: 434 GAGSWQALLEAGL----------LPDLLAWLELDAAALEQVPGIGKARANKLAASFARAR 483

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L +++ +LG+       A+ L          A + + + A +   W +      VG 
Sbjct: 484 QRPLAQWLKALGLP------AKQLPP--------AADWDALAARDLAQWQAEA---GVGP 526

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS 635
             A+ +  F++        E L     P 
Sbjct: 527 ARAKQLQAFFRAAELPALRERLRAVGVPG 555


>gi|16767024|ref|NP_462639.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|81853648|sp|Q8ZL42|LIGB_SALTY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|16422307|gb|AAL22598.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|312914765|dbj|BAJ38739.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 561

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 118/630 (18%), Positives = 225/630 (35%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLVDRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF   N           +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTNKYTLAVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFS---WLTLTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  N +       L  +  P  G
Sbjct: 531 RAGRVIDWRNNLQIKALSRWLAAQHIPGFG 560


>gi|238910220|ref|ZP_04654057.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 561

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 120/630 (19%), Positives = 227/630 (36%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +      A      +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLAVKNASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    K             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWKA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560


>gi|261823684|ref|YP_003261790.1| NAD-dependent DNA ligase LigB [Pectobacterium wasabiae WPP163]
 gi|261607697|gb|ACX90183.1| DNA ligase (NAD(+)) [Pectobacterium wasabiae WPP163]
          Length = 563

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 126/621 (20%), Positives = 228/621 (36%), Gaps = 94/621 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-PD-LA 66
                  ++ KE+++L Q++   DD YY   K  + D  YD L+ + +     F P    
Sbjct: 27  CPDWGNVRSNKEITALRQQLERWDDVYYTEGKSPVEDDVYDQLREQLNQWLSCFQPQNAI 86

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+    +             H +    L+K+ +   L ++I +    W        
Sbjct: 87  PVRLPDNGKQR-------------HPVAHTGLKKVSDRGRLVQWIAQREGLW-------- 125

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              ++PK+DG  IT+ Y+ GK V A  RG+G  GED +  +R IP IP +L+   P  + 
Sbjct: 126 ---IQPKVDGVAITLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLT-GAPSSLV 181

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           ++GE+++   D                 N R+  +G +RR  P+ +   ++ FV      
Sbjct: 182 LQGELFLKMTDHRQYTQ--------GGVNARSVVAGEMRRHQPSPVLSQISLFVWEWPDG 233

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +       E L+K++ +GF +  G   A         +       S LP+  DG+V + 
Sbjct: 234 PKAMP----ERLEKLKEMGFAMTAGYTHAIESFADAEKWRHY-WHHSPLPFVTDGVVIRQ 288

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            +    +     +    W I+ K+        + D+   +GRTG +  V +L P+ +   
Sbjct: 289 TKEPQGRYWRNTSA--DWAIAWKYPPVHQVAEVTDVAFSVGRTGKIAVVLKLNPMKLDDK 346

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++   + +    K             D++ GDRV V  AG+ IP++  +         +
Sbjct: 347 LVSRVNVGSLSRWK-----------QWDVQPGDRVSVSLAGQGIPRLDSVAWR---GAER 392

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P               P      A         C  Q L RL         N+ G+
Sbjct: 393 PALVP---------------PNEHDFHAFSCFRYSAVCQQQFLARLVWLSGEHGLNLAGM 437

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
                    + +     +       +L   Q  +      + G GD    ++Y S+   R
Sbjct: 438 RDGMWLRLMQHD----LLGDVLAWLSLTEAQLNA------VNGMGDKRARDIYTSLQSTR 487

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            + L R++ +LGI       ARS   +            + +A          +   +G+
Sbjct: 488 QVPLSRWLLALGIPV--PRSARSALDH-----------ADWLALQQRTAQQWRQFSGIGE 534

Query: 607 IIAQAIVEFYQNPRNICAVEA 627
             A+ I+ F  +P  +  +  
Sbjct: 535 RRAEEIMAFLNHPIVVEFIAR 555


>gi|162139527|ref|YP_218649.2| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224585537|ref|YP_002639336.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|166226375|sp|Q57I94|LIGB_SALCH RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|254809146|sp|C0Q1X9|LIGB_SALPC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|224470065|gb|ACN47895.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|322716720|gb|EFZ08291.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 561

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 119/630 (18%), Positives = 226/630 (35%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF   N           +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTNKYTLAVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560


>gi|68171542|ref|ZP_00544921.1| DNA ligase (NAD+) [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999047|gb|EAM85719.1| DNA ligase (NAD+) [Ehrlichia chaffeensis str. Sapulpa]
          Length = 366

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 155/385 (40%), Positives = 232/385 (60%), Gaps = 26/385 (6%)

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             +A T+L  I IQIGRTG+LTP+A L P+NIGG ++T A+LHN++ I+           
Sbjct: 1   AAEAKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVTRASLHNKNEIER---------- 50

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR GD V+VKRAG+VIP++VD+  N R  +   F FP+ CP C S V +        
Sbjct: 51  -KDIREGDYVIVKRAGDVIPQIVDVDKNLRTQELTKFVFPTTCPSCGSSVYQAKQE---- 105

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A+  CTG L C  Q LE++KHFVS+DAFNI G GK+QL FF++       I    DIF
Sbjct: 106 --ASIYCTGELFCKDQILEKIKHFVSKDAFNIIGFGKKQLLFFYEQR----LITNITDIF 159

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+ +   S  K+E++ G+G+ S++NL+ +IN  + ISLE FIF+LGIR +G  IA+ LA
Sbjct: 160 TLEEKISNSDVKLESLHGWGEKSMSNLFSAINNSKVISLENFIFALGIRFIGKYIAKILA 219

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ SY+ +  E+  +    N+D+   + +  +G     ++  F+  P N+  +  L+K 
Sbjct: 220 NHFSSYETWYNEMLKL--AQNEDY--SLNIQQIGSKTIGSLKMFFSQPHNLNMINDLVKH 275

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++ +  +    + S I  K +VFTG L  + R +A+      GA VS+ LS+ TD +I G
Sbjct: 276 LTITDTQSSSYL-SLIHGKIIVFTGELSSMSRSEAKIRSETAGAKVSSSLSKNTDFLIAG 334

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLF 716
           +NPGSK +KAQ L V+I+ E+ +L 
Sbjct: 335 NNPGSKYKKAQSLNVQILTEDLWLQ 359


>gi|197263258|ref|ZP_03163332.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197241513|gb|EDY24133.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 561

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 119/630 (18%), Positives = 227/630 (36%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+ A+G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +             +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLVVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRD----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFS---WLTLTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560


>gi|330972946|gb|EGH73012.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 561

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 119/613 (19%), Positives = 229/613 (37%), Gaps = 94/613 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +AR E ++L+Q+I+  DD Y++     I D  YD  +++ +     F      
Sbjct: 25  CPDWPAAKARSEATALQQQIAEWDDSYHRQGISQIADELYDQARQKLNLWRSCFAVSIPE 84

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP          +  ++  + H +P   + K+ +   ++ ++      W          
Sbjct: 85  SDP----------LKTAVGPLPHPVPHTGVNKLADEGSVKDWLKGRNDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ YEKG+ V A  RGDG  G+D ++  R I  I + L     E   ++
Sbjct: 125 -IQPKVDGVAVTLVYEKGRLVQAISRGDGRKGQDWTSQARLIKAIAQQL--PQAESTILQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+Y   +D +               N R+  +G+L R   +      +  FV       
Sbjct: 182 GELYWRLDDHIQ--------AASGSVNARSKVAGLLARQTISPQQADAIGLFVWDWPNGP 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A    + L  ++ +GF  +         +   + + E    R+ LP+  DG++ +  
Sbjct: 234 ADMA----QRLAGLQAMGFEDSAAYTHPLENYAQAARWREH-WYRNPLPFATDGVIMRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    
Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR GD++ V  AG  IP++  ++   R  +   
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQIAVSLAGLTIPRLDGVV--SRTAERAD 393

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P                +               C +Q   RL     +    + G+G
Sbjct: 394 MIIP----------------RADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               +    +      +    D  TL   +        NI GF + S   L DS+   R 
Sbjct: 438 PGTWNTLIDNGQIMGLL----DWMTLNHAELV------NIPGFAERSSAKLLDSLQTARE 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              + ++ ++G+   G                     + +   + + W +    P +G  
Sbjct: 488 RPFQTWLKAIGLPPTGGA-------------RLPDNWHELAGRSVEQWQAE---PGIGPG 531

Query: 608 IAQAIVEFYQNPR 620
            A  +  F+Q+P+
Sbjct: 532 RAARLRAFFQDPQ 544


>gi|332992915|gb|AEF02970.1| DNA ligase (NAD(+)) [Alteromonas sp. SN2]
          Length = 649

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 152/699 (21%), Positives = 292/699 (41%), Gaps = 104/699 (14%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           I    +  Y+   PI+ D +YD          H  P L          N +  E  +   
Sbjct: 48  ILKASNALYRAGSPILSDKQYDIYISLLRDQNHLHPYL----------NTVEPEPLIESK 97

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFTLEPKIDGTMITIRYEK 145
            V      LS EK ++++D+ K++ RI +  Q+    +  I   + PK+DG      Y+ 
Sbjct: 98  TVELPERMLSTEKAYSLQDIEKWVKRIQKAAQETNVPEEEIDIRVTPKLDGYAA---YDD 154

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G  +Y   RGDG+ G+DV+   +    +      N  E     GE+ I K+ F       
Sbjct: 155 GDTLY--TRGDGYRGQDVTRAFKRGLKV-----ANSGERGLGPGEIVIKKSYF------- 200

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
             V    + N RN  + I+      +  +                       ++   C+ 
Sbjct: 201 TEVLSSYFENSRNIQAAIIAEKKVDNRIQK---------------------AIKDGACVF 239

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKS-IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           +P             ++  +  +   I S++ +D+DG++ +    +++K +G   R+ RW
Sbjct: 240 YPFALLKNNTVKISVLMDEFESIVEGIWSSVDFDVDGVILETTNETIKKYMGATRRNHRW 299

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I+ K  E+ A+  ++ +  Q  RTG + PVA L P  + G  I+  T+H+ + +K    
Sbjct: 300 QIAFKVNEESANVEVVRVIPQTSRTGRIAPVAELVPTKLSGVTISRVTVHHYNMVKT--- 356

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                     +  G  + + R+G VIPK+ +++             P  CP C S ++ +
Sbjct: 357 --------NGVGAGAIIRLVRSGLVIPKIEEVLTKVAPD------IPDSCPSCGSHLLWE 402

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
            +           C   + C AQ    L HF  +   N +G G + ++        +F +
Sbjct: 403 SDNLI--------CPNKIDCPAQTENTLVHFF-KTLGNNDGFGSKTIEKL-----TSFGV 448

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL--ERFIFSLGIRHV 562
           +   +I++L+             +GFG+ +  NL++ +   R+I +   RF+ + G+  +
Sbjct: 449 KYIHEIYSLEVDDFL-------KIGFGEKTAINLFNQLQASRSIEIEDWRFLSAFGVSRL 501

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-PRN 621
           G+     L +++           ++++        +I++    +I A+AI E  +N    
Sbjct: 502 GSGNCEKLLEHH-----------SLVSLFELTVSDMIQIDGFAEISAEAIKEGLENIREE 550

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              V  L   + P+   + + +SS I    +VFTGT+ +  R   ++    LGA V   +
Sbjct: 551 FFKVYDLGFALRPTAIENTEKLSSPISGAIIVFTGTMIEGSRSDMEKNAKALGAKVGKSV 610

Query: 682 SRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + KT  ++ GD  G +K+  A+  GVK+++E+Q+L  ++
Sbjct: 611 TSKTTYLVTGDKVGETKINAAKDKGVKVLSEQQYLDFIR 649


>gi|168235353|ref|ZP_02660411.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194734322|ref|YP_002116682.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|226737627|sp|B4TZZ8|LIGB_SALSV RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|194709824|gb|ACF89045.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291581|gb|EDY30933.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 561

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 118/630 (18%), Positives = 224/630 (35%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +      A      +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYTLAVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRER---- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                              P      +         C  Q + RL    SR A  ++G+G
Sbjct: 389 ---------------SKPVPPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S  R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QSFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRDNPQIKALSRWLSAQHIPGFG 560


>gi|161616820|ref|YP_001590785.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|189046593|sp|A9MVP4|LIGB_SALPB RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|161366184|gb|ABX69952.1| hypothetical protein SPAB_04639 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 561

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 117/630 (18%), Positives = 223/630 (35%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +      A      +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLAVKNASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRER---- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                              P      +         C  Q + RL    SR A  ++G+G
Sbjct: 389 ---------------SKPVPPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560


>gi|168818429|ref|ZP_02830429.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205344676|gb|EDZ31440.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320088159|emb|CBY97921.1| DNA ligase Polydeoxyribonucleotide synthase [NAD+] [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 561

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 116/630 (18%), Positives = 222/630 (35%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -IQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +      A      +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLAVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRER---- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                              P      +         C  Q + RL    SR A  ++G+G
Sbjct: 389 ---------------SKPVPPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  N +       L  +  P  G
Sbjct: 531 RAGRVIDWRNNLQIKALSRWLAAQHIPGFG 560


>gi|327482626|gb|AEA85936.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri DSM 4166]
          Length = 553

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 135/629 (21%), Positives = 238/629 (37%), Gaps = 98/629 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +AR+E+  L+ +++  DD Y++  + ++ D  YD  + + D     F  +   
Sbjct: 20  CPNWDDARARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCF--VGTG 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ PL   GG +        H I    L K+ + + +  +I R    W          
Sbjct: 78  AAPD-PLQDAGGPL-------RHPIRQTGLVKLADEQAVATWIARRRDLW---------- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ Y  G    A  RGDG +G+D +A  R +  IP  L+  +P+ + ++
Sbjct: 120 -IQPKIDGVAVTLVYRHGALQQAISRGDGLTGQDWTANARRLAAIPARLA--VPDEVILQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKT 246
           GE+Y   +  +              A  R   +G +    L+     R +  FV      
Sbjct: 177 GELYWRLDRHVQ--------ASHGSAGARGRVAGAMASNGLDRDTAAR-IGLFVWDWPNG 227

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                      L ++  LGFP      Q         ++ E    R  LP+  DG+V + 
Sbjct: 228 ----PDSMNARLGQLAALGFPDTQAFSQPVETLEHARHWREH-WYRQALPFATDGVVLRQ 282

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++    ++       P W  + K+  ++A T + D++ +IGRTG +TP+ +L PV +   
Sbjct: 283 EQRPPAERWQA---EPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDDR 339

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +   +L + D  + L           D+R GDRV V  AG  IP++  ++   RH +  
Sbjct: 340 RVRTLSLGSLDRWQAL-----------DVRPGDRVAVALAGHSIPQLDSVVW--RHTERA 386

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P + P              +P+     +  R      C  Q L RL     R    +EG+
Sbjct: 387 PVAAP--------------DPRRYHPDSCWR--PAPGCDQQFLARLVWLGGRQGLALEGV 430

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G        ++            +  L    +     +E + G G      L  S  + R
Sbjct: 431 GAGSWQALLEAGL----------LPDLLAWLELDAAALEQVPGIGKARANKLAASFARAR 480

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L +++ +LG+       A+ L          A + + + A +   W +      VG 
Sbjct: 481 QRPLAQWLKALGLP------AKQLPP--------AADWDALAARDLAQWQAEA---GVGP 523

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS 635
             A+ +  F+         E L     P 
Sbjct: 524 ARAKQLQAFFGAAELPALRERLRAVGVPG 552


>gi|198244266|ref|YP_002217699.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|226737621|sp|B5FM71|LIGB_SALDC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|197938782|gb|ACH76115.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326625484|gb|EGE31829.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 561

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 120/630 (19%), Positives = 228/630 (36%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+ A+G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +      A      +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLAVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560


>gi|330955026|gb|EGH55286.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae Cit 7]
          Length = 561

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 115/613 (18%), Positives = 229/613 (37%), Gaps = 94/613 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +AR E+++L+Q+++  DD Y++     I D  YD  +++       F      
Sbjct: 25  CPDWSAAKARSEVTNLQQQMAAWDDSYHRQGISPIPDELYDQARQKLSLWRSCFAVSTPE 84

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP          +  ++  + H +    + K+ +   ++ ++      W          
Sbjct: 85  ADP----------LKTAVGPLPHPVAHTGVNKLADESSVKDWLKGRNDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ YE G+ V A  RGDG  G+D ++  R I  IP+ L     +   ++
Sbjct: 125 -IQPKVDGVAVTLVYENGQLVQAISRGDGRKGQDWTSQARLIKAIPQQL--PQADSAILQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE+Y   +D +               N R+  +G+L R   +      +  FV       
Sbjct: 182 GELYWRLDDHIQ--------SASGSVNARSKVAGLLARQTISPQQADAIGLFVWDWPNGP 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A    + L  ++ +GF  +         +   + + E    R+ LP+  DG++ +  
Sbjct: 234 GDMA----QRLAGLQAMGFEDSAAYSHPLENYAKAARWREH-WYRNPLPFATDGVIMRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    
Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVCKVNFKIGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR G ++ V  AG  IP++  ++   R  +   
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGAQIAVSLAGLTIPRLDGVVT--RAAERAD 393

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P                +               C +Q   RL     +    + G+G
Sbjct: 394 IIIP----------------RAEDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               +   ++      +    D  TL   +        NI GF + S   L +S+   R 
Sbjct: 438 PGTWNTLIENGQIMGLL----DWMTLNHAELA------NIPGFAERSSAKLLNSLQTARE 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              + ++ ++G+   G                     + +   + + W +    P +G  
Sbjct: 488 RPFQTWLKAIGLPPTGGA-------------RLPDNWHELAERSVEQWQAE---PGIGPG 531

Query: 608 IAQAIVEFYQNPR 620
            A  +  F+Q+P+
Sbjct: 532 RAARLRAFFQDPQ 544


>gi|167549012|ref|ZP_02342771.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205325606|gb|EDZ13445.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 561

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 119/630 (18%), Positives = 227/630 (36%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +             +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLVVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N LGF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFSWLA---LTSAQIANTLGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560


>gi|237802303|ref|ZP_04590764.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331025160|gb|EGI05216.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 560

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 124/625 (19%), Positives = 226/625 (36%), Gaps = 94/625 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A  E+++L+++I+  DD Y++     I D  YD  + +       F     S
Sbjct: 25  CPDWSAARANNEITALQKQIAEWDDSYHRQGVSQIPDELYDQSRLKLKVWRSCF---RVS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PL    G +        H IP   + K+ + + +  ++      W          
Sbjct: 82  TVADNPLKTATGPL-------AHPIPHTGVNKLADEKSVTAWLRGRTDVW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ YE G+ V A  RGDG  G+D +   R I  IP+ L     E + ++
Sbjct: 125 -IQPKVDGVAVTLVYEGGRLVQAISRGDGKKGKDWTPQARLIKAIPQQL--PHAEYLVLQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL-RRLNPTDITRYLNFFVHGLGKTS 247
           GE+Y   +D +               N R+  +G+L RR         +   V       
Sbjct: 182 GELYWRLDDHIQ--------AISGSINARSKVAGLLARRTISPQQADAIGLLVWDWPNGP 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   + L  ++  GF  +         H   S + E    R+ LP+  DG++ +  
Sbjct: 234 ADMP----QRLAGLQAQGFEDSATYTHRLENHAQASQWREH-WYRNPLPFATDGVIIRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  ++  IGR+G +TPV  L+PV +    
Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFNIGRSGRITPVLELKPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR GD++ V  AG  IP++  ++          
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQIAVSLAGLTIPRLDGVVARA------- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                      +  V    P                C +Q   RL     +    + G+G
Sbjct: 389 -----------AERVSMTIPHASDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               D   +S   +  +    D  TL   +        NI G  + S   L DS+   R 
Sbjct: 438 PGTWDKLIESGQISGLL----DWMTLNHAELA------NIPGLAERSSAKLLDSLQTARA 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
                ++ ++G+   G                     +++   + + W +    P VG  
Sbjct: 488 KPFLAWLKAIGMPPTGDA-------------KLPDNWHDLTTRSVEQWQAE---PGVGAS 531

Query: 608 IAQAIVEFYQNPRNICAVEALLKEV 632
            +  +  F+Q+P      + L    
Sbjct: 532 RSAKLRAFFQDPHVKAMSQQLQAHG 556


>gi|197247797|ref|YP_002148670.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|226737620|sp|B5EXF2|LIGB_SALA4 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|197211500|gb|ACH48897.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 561

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 119/630 (18%), Positives = 227/630 (36%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +             +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLVVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFS---WLTLTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S  R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QSFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560


>gi|312170612|emb|CBX78875.1| putative NAD-dependent DNA ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 554

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 125/620 (20%), Positives = 235/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A  E+++L+ ++   D+ YY+  +  + D  YD L  +       F      
Sbjct: 19  CPVWSPSRADAEIAALKAQLEKWDEAYYRRGEAQVPDERYDTLHDKLQQWQRCF------ 72

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P   L +    +  +  KV H +    ++K      + +++ +    W          
Sbjct: 73  -SPASDLRQ---PLLKTDGKVLHPVSHTGVKKASGKAAVARWMEKRDGLW---------- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  G+ V    RGDG  GED +A  R IP IP+ +    P +   +
Sbjct: 119 -IQPKVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPDIPKSIP-RFPAMQVFQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+Y+   D    ND           + R+  +G L     + + + +  FV        
Sbjct: 177 GELYLKMTDHQQAND--------GGKSARSLVAGALMAKAASTVLQRVGIFVWAWPDGPN 228

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
             AK     L  +R LGFP + +   +      +  +       R  LP+  DG+V   +
Sbjct: 229 SIAK----RLTGIRALGFPDIKDWTHRVENVDEVEGWRERWFHQR--LPFATDGIVVHGM 282

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
                   L ER     W I+ K+   + ++ +  ++  IGRTG +  V  L PV +   
Sbjct: 283 PTRQGTDWLPERG---DWAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDK 339

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++   + + ++ K             D+  GD+V +  AG  +P++  +I   +     
Sbjct: 340 RVSRVNIGSIEHWK-----------QTDVIAGDQVSISLAGMGVPRMDKVIWRVK----- 383

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
                          V    P      +         C  Q L RL+   S+   N+ G 
Sbjct: 384 -------------ERVLPPLPDATHFNSLSCFHLTPKCRQQFLARLEWLSSKPVLNLSGA 430

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+Q      +S          A IF+       S  +++ + G G+      +      R
Sbjct: 431 GRQTWQQLMQSGSM-------AHIFSWLA---LSEEELKAVPGIGEQRAHFFWHQFRLSR 480

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            +  +R++ +LG+  +      +L     +  N+ Q    +++H+  DW    ++P VG 
Sbjct: 481 QLPFKRWVKALGVP-IPERAMNTL-----TDDNWQQ----LLSHSLQDWQ---QLPGVGQ 527

Query: 607 IIAQAIVEFYQNPRNICAVE 626
            +A+ I  + Q       ++
Sbjct: 528 TLARKIFSYLQQQEVRQLID 547


>gi|207858976|ref|YP_002245627.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|226737622|sp|B5R5H2|LIGB_SALEP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|206710779|emb|CAR35140.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 561

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 120/630 (19%), Positives = 227/630 (36%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF   N           +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTNKYTLAVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIDSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FKHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S  R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QSFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560


>gi|330940502|gb|EGH43581.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 561

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 122/614 (19%), Positives = 230/614 (37%), Gaps = 96/614 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +AR E+++L+Q+I+  DD Y++     I D  YD  +++       F   A S
Sbjct: 25  CPDWSAAKARSEITALQQQIAAGDDSYHRQGISQIPDELYDQARQKLSLWRSCF---AVS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PL    G +        H +P   + K+ +   ++ ++      W          
Sbjct: 82  TPESNPLKTAVGPL-------PHPVPHTGVNKLADEGSVKDWLKGRNDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ YE+G+ V A  RGDG  G+D +   R I TIP+ L     E   ++
Sbjct: 125 -IQPKVDGVAVTLVYEQGQLVQAISRGDGRKGQDWTLQARLIKTIPQQL--PQAESPVLQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+Y   +D +               N R+  +G+L R   +      +  FV       
Sbjct: 182 GELYWRLDDHIQ--------AASGSVNARSKVAGLLARQTISPQQADAIGLFVWDWPNGP 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
              A    + L  ++ +GF  +         +             R+ LP+  DG++ + 
Sbjct: 234 ADMA----QRLAGLQAMGFEDSAAYTHPLQNYAQAARGREHW--YRNPLPFATDGVIMRQ 287

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            +    ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +   
Sbjct: 288 GQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDR 345

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++  +  +    + L           DIR GD++ V  AG  IP++  ++         
Sbjct: 346 TVSRISTGSLQRWQTL-----------DIRPGDQIAVSLAGLTIPRLDGVVSRA------ 388

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
                       +     + P+               C +Q   RL     +    + G+
Sbjct: 389 ------------AERADMIIPRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGV 436

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G    +   ++      +    D  TL   +        NI GF + S   L DS+   R
Sbjct: 437 GPGTWNTLIENGQIMGLL----DWMTLNHAELV------NIPGFAERSSAKLLDSLQTAR 486

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
               + ++ ++G+   G                     + +   + + W +    P +G 
Sbjct: 487 ERPFQTWLKAIGLPPTGGA-------------RLPDNWHELADRSVEQWQAE---PGIGP 530

Query: 607 IIAQAIVEFYQNPR 620
             A  +  F+Q+P+
Sbjct: 531 GRAARLRAFFQDPQ 544


>gi|66048020|ref|YP_237861.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae
           B728a]
 gi|81307820|sp|Q4ZLZ9|LIGB_PSEU2 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|63258727|gb|AAY39823.1| DNA ligase (NAD+) [Pseudomonas syringae pv. syringae B728a]
          Length = 561

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 117/613 (19%), Positives = 229/613 (37%), Gaps = 94/613 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +AR E+++L+Q+I+  DD Y++     I D  YD  +++ +     F      
Sbjct: 25  CPDWPAAKARSEVTALQQQIAEWDDSYHRQGISQIADELYDQARQKLNLWRSCF----AV 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P          +  ++  + H +P   + K+ +   ++ ++      W          
Sbjct: 81  STPES------DPLKTAVGPLPHPVPHTGVNKLADEGSVKGWLKGRNDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ YEKG+ V A  RGDG  G+D ++  R I  I + L     E   ++
Sbjct: 125 -IQPKVDGVAVTLVYEKGRLVQAISRGDGRKGQDWTSQARLIKAIAQQL--PQAESTILQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+Y   +D +               N R+  +G+L R   +      +  FV       
Sbjct: 182 GELYWRLDDHIQ--------AASGSVNARSKVAGLLARQTISPQQADAIGLFVWDWPNGP 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A    + L  ++ +GF  +         +   + + E    R+ LP+  DG++ +  
Sbjct: 234 ADMA----QRLAGLQAMGFEDSAAYTHPLENYVQAARWREH-WYRNPLPFATDGVILRQG 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    ++   +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    
Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +  +    + L           DIR GD++ V  AG  IP++  ++          
Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQIAVSLAGLTIPRLDGVVSRA------- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                      +     + P+               C +Q   RL     +    + G+G
Sbjct: 389 -----------AERADMIIPRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               +    +      +    D  TL   +        NI GF + S   L DS+   R 
Sbjct: 438 PGTWNTLIDNGQIMGLL----DWMTLNHAELV------NIPGFAERSSAKLLDSLQTARE 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              + ++ ++G+   G                     + +   + + W +    P +G  
Sbjct: 488 RPFQTWLKAIGLPPTGGA-------------RLPDNWHELAGRSVEQWQAE---PGIGPG 531

Query: 608 IAQAIVEFYQNPR 620
            A  +  F+Q+P+
Sbjct: 532 RAARLRAFFQDPQ 544


>gi|200387460|ref|ZP_03214072.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199604558|gb|EDZ03103.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 561

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 117/630 (18%), Positives = 225/630 (35%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +             +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLVVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFS---WLTLTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  N +       L  +  P  G
Sbjct: 531 RAGRVIDWRNNLQIKALSRWLAAQHIPGFG 560


>gi|323189446|gb|EFZ74727.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli RN587/1]
          Length = 561

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 230/620 (37%), Gaps = 92/620 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    
Sbjct: 22  CPAWSSARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHR 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DAMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 180 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 232 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 285

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +   ++ +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KVQRVSIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL     +    ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGLKQVLGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 481 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 540

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 541 NAQIKTLGSWLAAQQITGFE 560


>gi|331644366|ref|ZP_08345495.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H736]
 gi|331655280|ref|ZP_08356279.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli M718]
 gi|331036660|gb|EGI08886.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H736]
 gi|331047295|gb|EGI19373.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli M718]
          Length = 562

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 286

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|293463971|ref|ZP_06664385.1| DNA ligase B [Escherichia coli B088]
 gi|291321603|gb|EFE61039.1| DNA ligase B [Escherichia coli B088]
          Length = 562

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRGA 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|218556210|ref|YP_002389123.1| NAD-dependent DNA ligase LigB [Escherichia coli IAI1]
 gi|226737616|sp|B7M4D2|LIGB_ECO8A RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218362978|emb|CAR00615.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1]
          Length = 560

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRGA 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|300950021|ref|ZP_07163971.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 116-1]
 gi|300955364|ref|ZP_07167743.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 175-1]
 gi|301644314|ref|ZP_07244316.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 146-1]
 gi|300317736|gb|EFJ67520.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 175-1]
 gi|300450635|gb|EFK14255.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 116-1]
 gi|301077352|gb|EFK92158.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 146-1]
          Length = 561

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 232 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 285

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 481 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 540

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 541 NAQIKKLGSWLAAQQITGFE 560


>gi|326629797|gb|EGE36140.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 562

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 120/630 (19%), Positives = 227/630 (36%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 23  CPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 83  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 123 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 181 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 232

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF   N           +        +  S LP+  DG+V ++ 
Sbjct: 233 NMP----ERLSQLAKAGFSLTNKYTLAVKDASEVERARQSWLT--SALPFVTDGVVIRMA 286

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 287 KEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 344

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 345 VQRVNIDSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 389 ----------RSKPV----PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 435 EASWRALHQTHR-------FKHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARR 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S  R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 485 QSFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWWQLPATGER 531

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 532 RAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 561


>gi|301028426|ref|ZP_07191672.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 196-1]
 gi|299878537|gb|EFI86748.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 196-1]
          Length = 560

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLWG--------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 122 --QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|168464952|ref|ZP_02698844.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195632322|gb|EDX50806.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 561

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 118/630 (18%), Positives = 226/630 (35%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +             +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLVVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFS---WLTLTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560


>gi|168241918|ref|ZP_02666850.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205339075|gb|EDZ25839.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 561

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 116/630 (18%), Positives = 222/630 (35%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +             +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLVVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRER---- 388

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                              P      +         C  Q + RL    SR A  ++G+G
Sbjct: 389 ---------------SKPVPPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560


>gi|205354659|ref|YP_002228460.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|226737623|sp|B5RG75|LIGB_SALG2 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|205274440|emb|CAR39472.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 561

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 120/630 (19%), Positives = 227/630 (36%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF   N           +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTNKYTLAVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIDSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FKHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S  R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QSFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWWQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560


>gi|256025622|ref|ZP_05439487.1| NAD-dependent DNA ligase LigB [Escherichia sp. 4_1_40B]
 gi|307140346|ref|ZP_07499702.1| NAD-dependent DNA ligase LigB [Escherichia coli H736]
 gi|315618649|gb|EFU99235.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 3431]
          Length = 560

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|310765950|gb|ADP10900.1| NAD-dependent DNA ligase LigB [Erwinia sp. Ejp617]
          Length = 560

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 123/619 (19%), Positives = 235/619 (37%), Gaps = 91/619 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A  E+S+LE ++   DD YY+  +  I D  YD L  +       F      
Sbjct: 19  CPVWSASRADAEISALEAQLKKWDDAYYRRGESQIPDERYDTLHGKLQQWQRCF------ 72

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P   L +    +  +  KV H +    ++K+ +   + +++ +    W          
Sbjct: 73  -SPASDLRQ---PLLKTDGKVLHPVSHTGVKKLSDKAAVARWMEKRDGLW---------- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  G+ V    RGDG  GED +A  R IP IP+ +    P +   +
Sbjct: 119 -IQPKVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPAIPKSIP-RFPAVQVFQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+Y+   D      +    G K   + R+  +G L    P+ + + +  FV        
Sbjct: 177 GELYLKMTDH-----QQATDGGK---SARSIVAGALMAKAPSTMLQRVGIFVWAWPDG-- 226

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  + L  +R LGFP ++N   +      +  +          LP+  DG+V    
Sbjct: 227 --PNSIAQRLTGIRALGFPDISNWTHRVENVDEVEGWRERW--FHQALPFATDGIVVH-- 280

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               ++          W I+ K+   + ++ +  ++  IGRTG +  V  L PV +    
Sbjct: 281 SIPTRQGTDWLPELGDWAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKR 340

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++   + + ++ K             D+  GD V +  AG  +P++  +I   +      
Sbjct: 341 VSRVNIGSIEHWK-----------QTDVIAGDLVSISLAGLGVPRMDKVIWRVK------ 383

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                         V    P      +         C  Q L RL+   S+   N+ G G
Sbjct: 384 ------------ERVLPPLPDATHFNSLSCFRLTAQCRQQFLARLEWLSSKPVLNLSGAG 431

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +Q      ++          A IF+       S  +++ + G G+      +      R 
Sbjct: 432 RQTWQQLIQAGSM-------AHIFSWLA---LSEEQLKAVPGIGEQRAHFFWQQFRLSRQ 481

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +  +R++ +LG+  +      +L     +  N+ Q    +++H+  DW    ++P VG  
Sbjct: 482 LPFKRWVKALGVP-IPERAMNTL-----TDDNWQQ----LLSHSLQDWQ---QLPGVGQT 528

Query: 608 IAQAIVEFYQNPRNICAVE 626
           +A+ I  + +       ++
Sbjct: 529 LARKIFSYLRQQEVRQLID 547


>gi|194449070|ref|YP_002047770.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|226737624|sp|B4T9Z1|LIGB_SALHS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|194407374|gb|ACF67593.1| NAD-dependent DNA ligase domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
          Length = 561

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 118/630 (18%), Positives = 226/630 (35%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLLYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +             +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLVVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560


>gi|292486544|ref|YP_003529410.1| putative NAD-dependent DNA ligase [Erwinia amylovora CFBP1430]
 gi|292897779|ref|YP_003537148.1| DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291197627|emb|CBJ44721.1| putative DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291551957|emb|CBA18994.1| putative NAD-dependent DNA ligase [Erwinia amylovora CFBP1430]
          Length = 554

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 122/619 (19%), Positives = 233/619 (37%), Gaps = 91/619 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A  E+++L+ ++   D+ YY+  +  + D  YD L  +       F      
Sbjct: 19  CPVWSPSRADAEIAALKAQLEKWDEAYYRRGEAQVPDERYDTLHDKLQQWQRCF------ 72

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P   L +    +  +  KV H +    ++K      + +++ +    W          
Sbjct: 73  -SPASDLRQ---PLLKTDGKVLHPVSHTGVKKASGKAAVARWMEKRDGLW---------- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  G+ V    RGDG  GED +A  R IP IP+ +    P +   +
Sbjct: 119 -IQPKVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPDIPKSIP-RFPAMQVFQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+Y+   D    ND           + R+  +G L     + + + +  FV        
Sbjct: 177 GELYLKMTDHQQAND--------GGKSARSLVAGALMAKAASTVLQRVGIFVWAWPDGPN 228

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             AK     L  +R LGFP + +   +      +  +       R  LP+  DG+V    
Sbjct: 229 SIAK----RLTGIRALGFPDIKDWTHRVENVDEVEGWRERWFHQR--LPFATDGIVVH-- 280

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               ++          W I+ K+   + ++ +  ++  IGRTG +  V  L PV +    
Sbjct: 281 GMPTRQGTDWLPEQGDWAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKR 340

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++   + + ++ K             D+  GD+V +  AG  +P++  +I   +      
Sbjct: 341 VSRVNIGSIEHWK-----------QTDVIAGDQVSISLAGMGVPRMDKVIWRVK------ 383

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                         V    P      +         C  Q L RL+   S+   N+ G G
Sbjct: 384 ------------ERVLPPLPDATHFNSLSCFHLTPKCRQQFLARLEWLSSKPVLNLSGAG 431

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +Q      +S          A IF+       S  +++ + G G+      +      R 
Sbjct: 432 RQTWQQLMQSGSM-------AHIFSWLA---LSEEELKAVPGIGEQRAHFFWQQFRLSRQ 481

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +  +R++ +LG+  +      +L     +  N+ Q    +++H+  DW    ++P VG  
Sbjct: 482 LPFKRWVKALGVP-IPERAMNTL-----TDDNWQQ----LLSHSLQDWQ---QLPGVGQT 528

Query: 608 IAQAIVEFYQNPRNICAVE 626
           +A+ I  + Q       ++
Sbjct: 529 LARKIFSYLQQQEVRQLID 547


>gi|330961969|gb|EGH62229.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 523

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 127/618 (20%), Positives = 235/618 (38%), Gaps = 106/618 (17%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSEDPNGPLNK 77
           ++L+Q+I+  DD Y++    +I D  YD  +++  A    F    P+        GPL  
Sbjct: 1   TALQQQIASWDDSYHRQGISLIPDELYDQARQKLSAWRTCFAVSTPEANPLATATGPL-- 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
                        H IP   + K+ + +D++ ++      W           ++PK+DG 
Sbjct: 59  ------------AHPIPHTGVNKLADEKDVKAWLKGRTDLW-----------IQPKVDGV 95

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y++G+ V A  RGDG  G+D +   R I  IPR L     E + ++GE+Y   ++
Sbjct: 96  AVTLIYDEGRLVQAISRGDGVQGQDWTPQARLIKAIPRQLPRT--ESVILQGELYWRLDE 153

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
            +               N R+  +G+L R          +  FV               +
Sbjct: 154 HIQ--------ATSGSVNARSKVAGLLARQTIKPQQANAIGLFVWDWPNG----PTDMAQ 201

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  ++ +GF  + G       H   + + E    R+ LP+  DG++ +  +    ++  
Sbjct: 202 RLAGLQAMGFGDSVGYTHLLENHAQAAKWREH-WYRNPLPFATDGVIMRQGQRPPAQRWQ 260

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A  P W+ + K    QA   + +++  +GR+G +TPV  L PV +   ++T  +  + 
Sbjct: 261 ATA--PYWIAAWKHPYAQALAEVRNVNFTVGRSGRITPVLELTPVRLDDRIVTRISAGSL 318

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFC 434
              + L           DIR GD+V V  AG  IP++  ++    ER   + P +     
Sbjct: 319 QRWQAL-----------DIRPGDQVAVSLAGLTIPRLDSVVSRATERAEMSTPDARDFHE 367

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
             C                          C +Q   RL     +    + G+G    D  
Sbjct: 368 LSCWQA--------------------TPGCESQFRARLVWLSGKKGLALPGVGPGTWDRL 407

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            ++   A  +    D  TL   +        NI GF + S   L  S+   R    + ++
Sbjct: 408 IENGRIAGLL----DWMTLNHAELA------NIPGFAERSSAKLLASLQTARERPFQVWL 457

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            ++G+   G   A+                +++ A + + W +    P +G   A  +  
Sbjct: 458 KAIGLPPTG--TAK-----------LPDNWHDLAARSVEQWQAE---PGIGPGRAAKLRA 501

Query: 615 FYQNPRNICAVEALLKEV 632
           F+ +P+     + L  + 
Sbjct: 502 FFHDPQVQAISQQLQAQG 519


>gi|331675125|ref|ZP_08375882.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA280]
 gi|331068034|gb|EGI39432.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA280]
          Length = 562

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 122/618 (19%), Positives = 236/618 (38%), Gaps = 89/618 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVIHPVAHTGVRKMADEIALSLWMRECSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLKREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG++ +  
Sbjct: 233 LM----TDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AKLPFVTDGVIVRAA 286

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ KF        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKFQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +    + +    +             DI  GD++LV  AG+ IP++ D++       A+
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVW-RGAERAK 391

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P                   P   +  +         C  Q + RL    S+    ++G+
Sbjct: 392 P------------------TPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGI 433

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+       ++            IF+       +T +++N  G        ++   N  R
Sbjct: 434 GEAGWRALHQT-------HRFEHIFS---WLLLTTEQLQNTPGIAKSKSAQIWHQFNLAR 483

Query: 547 NISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLSLI 599
                R++ ++GI      + A   RS ++  LS + F Q++       A    +W    
Sbjct: 484 KQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQLPGTGSGRARQVIEWKENA 543

Query: 600 RVPLVGDIIAQAIVEFYQ 617
           ++  +G  +A   +  ++
Sbjct: 544 QIKKLGSWLAAQQITGFE 561


>gi|253690568|ref|YP_003019758.1| DNA ligase (NAD(+)) [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259494926|sp|C6DJC3|LIGB_PECCP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|251757146|gb|ACT15222.1| DNA ligase (NAD(+)) [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 562

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 124/619 (20%), Positives = 231/619 (37%), Gaps = 90/619 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +++KE+ +L Q++   DD YY   K  + D  YD L+ + +     F      
Sbjct: 26  CPDWDNTRSKKEIDALRQQLEQWDDVYYTEGKSPVADDVYDQLREQLNQWLGCF------ 79

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                P   +         K  H +    L+K+ + E L ++I +    W          
Sbjct: 80  ----QP-QSVASVRLPDHGKQLHPVAHTGLKKLSDREQLVQWIAQREDVW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ Y+ GK   A  RG+G  GED +  +R IP IP +L+ N+P ++ ++
Sbjct: 125 -IQPKIDGVAVTLVYQHGKLESAVSRGNGLQGEDWTEKVRLIPEIPHLLT-NVPSLLVLQ 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++   D             +   N R+  +G +RR  P+ +   +  F+        
Sbjct: 183 GELFLKMTDHRQ--------HIQGGVNARSVVAGEMRRHQPSPVLSQIGLFIWEWPDG-- 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   E L+K+  +GF +      A         ++      + LP+  DG+V +  +
Sbjct: 233 --PKTMPERLEKLTEMGFAMTADYTHAIGSFADAEKWHHY-WYHNPLPFVTDGVVLRQTK 289

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +     +    W I+ K+        ++D+   +GRTG L  V +L  + +    +
Sbjct: 290 EPQGRYWRNTSA--DWAIAWKYPPFHQVAEVIDVVFSVGRTGKLAVVLKLNLLKLDDKSV 347

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +   + +    K             D+  GDRV V  AG+ IP++ +++   R  +  P 
Sbjct: 348 SRVNVGSLSRWK-----------QWDVLPGDRVSVSLAGQGIPRLDNVVW--RSTERLPI 394

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             PS          R                    C  Q L RL         N+ G+  
Sbjct: 395 VSPSEHDFHAFSCFRY----------------STVCQQQFLARLVWLSGEHGLNLTGVRD 438

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                  +       +       +L   Q  + T      G GD    ++Y S+   R +
Sbjct: 439 GMWLRLMQH----GLLEDVLSWLSLTEAQLNAVT------GMGDKRARDIYKSLQSARQM 488

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R++ +LG+    + I+      +L+ Q +                   +   +G+  
Sbjct: 489 PLSRWLLALGLPVPRSAISALNHVNWLALQQWTA-------------QQWRQFSGIGERR 535

Query: 609 AQAIVEFYQNPRNICAVEA 627
           A+ I+ F ++P  +  +  
Sbjct: 536 AEEIMAFLKHPAVVEFIAR 554


>gi|153217073|ref|ZP_01950837.1| DNA ligase [Vibrio cholerae 1587]
 gi|124113903|gb|EAY32723.1| DNA ligase [Vibrio cholerae 1587]
          Length = 324

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 121/361 (33%), Positives = 197/361 (54%), Gaps = 39/361 (10%)

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           + +GG  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V +++  
Sbjct: 1   MFVGGVTVSNATLHNADEIERLG-----------VMVGDTVVIRRAGDVIPQIVSVVLER 49

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  +A+   FP+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A
Sbjct: 50  RPENAKSIVFPTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKA 103

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            ++EGLG + ++     E     +  PAD+F L+  + T   ++      G  S  N+ D
Sbjct: 104 MDVEGLGDKVIEQLVDREM----VSTPADLFRLRAGELTILERM------GPKSAQNVID 153

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++NK +  +L +F+++LGIR VG   A +LA+++LS +   Q                I 
Sbjct: 154 ALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIE 203

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTL 658
           VP VG ++A  +  F+   RN   +  LL++    P++      V S +  K +V TG+ 
Sbjct: 204 VPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSF 263

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            ++ R+ A+  +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L
Sbjct: 264 TQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFL 323

Query: 719 Q 719
           +
Sbjct: 324 K 324


>gi|194445315|ref|YP_002042988.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|226737625|sp|B4SXE9|LIGB_SALNS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|194403978|gb|ACF64200.1| NAD-dependent DNA ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 561

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 117/630 (18%), Positives = 225/630 (35%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQVVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +             +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLVVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFS---WLTLTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  N +       L  +  P  G
Sbjct: 531 RAGRVIDWRNNLQIKALSRWLAAQHIPGFG 560


>gi|323965913|gb|EGB61361.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli M863]
          Length = 562

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 123/620 (19%), Positives = 237/620 (38%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F + +R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNESR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PL             V H +    + K+ +   LR ++      W          
Sbjct: 83  DAMMPPLA----------GTVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  IP++P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVPQTVSGPL-VNSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R+  +G+L R   +D    L  FV      ++
Sbjct: 181 GEIFLKREGHIQQ--------QMGGINARSKVAGLLMRQGNSDTLNSLGVFVWAWPDGTQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + LQ++   GF +     R  N    +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLQQLTTAGFTLTQTYTRAVNNADEVERIRNEWWK--AKLPFVTDGVVVRAA 286

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ +++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDNVVWRGTERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQTHR-------FEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|168233263|ref|ZP_02658321.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470644|ref|ZP_03076628.1| NAD-dependent DNA ligase adenylation domain [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194457008|gb|EDX45847.1| NAD-dependent DNA ligase adenylation domain [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205332601|gb|EDZ19365.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 561

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 120/630 (19%), Positives = 228/630 (36%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+  +G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASTLNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF + N    A      +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTNKYSLAVKNASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRE----- 387

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                     +S+ V    P      +         C  Q + RL    SR A  ++G+G
Sbjct: 388 ----------RSKPV----PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFS---WLTLTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S  R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QSFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
               ++++  NP+       L  +  P  G
Sbjct: 531 RVGRVIDWRDNPQINALSRWLAAQHIPGFG 560


>gi|168260506|ref|ZP_02682479.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205350522|gb|EDZ37153.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 561

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 118/630 (18%), Positives = 225/630 (35%), Gaps = 92/630 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+ A+G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +             +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLVVKNASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++          
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWR-------- 384

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                    C+        P      +         C  Q + RL    SR A  ++G+G
Sbjct: 385 --------SCERS---KPVPPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++            IF+       ++ +I N  GF       ++   N  R 
Sbjct: 434 EASWRALHQTHR-------FEHIFS---WLTLTSAQIANTPGFAKGKSEQIWRQFNLARR 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S  R+I ++ I       A   A    S++                     ++P  G+ 
Sbjct: 484 QSFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGER 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
            A  ++++  NP+       L  +  P  G
Sbjct: 531 RAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560


>gi|259906726|ref|YP_002647082.1| NAD-dependent DNA ligase LigB [Erwinia pyrifoliae Ep1/96]
 gi|224962348|emb|CAX53803.1| NAD-dependent DNA ligase [Erwinia pyrifoliae Ep1/96]
 gi|283476511|emb|CAY72326.1| putative NAD-dependent DNA ligase [Erwinia pyrifoliae DSM 12163]
          Length = 560

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 122/619 (19%), Positives = 234/619 (37%), Gaps = 91/619 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A  E+S+LE ++   DD YY+  +  I D  YD L  +       F      
Sbjct: 19  CPVWSASRADAEISALEAQLKKWDDAYYRRGESQIPDERYDTLHGKLQQWQRCF------ 72

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P   L +    +  +  KV H +    ++K+ +   + +++ +    W          
Sbjct: 73  -SPASDLRQ---PLLKTDGKVLHPVSHTGVKKLSDKAAVARWMEKRDGLW---------- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  G+ V    RGDG  GED +A  R IP IP+ +    P +   +
Sbjct: 119 -IQPKVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPAIPKSIP-RFPAVQVFQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+Y+   D      +    G K   + R+  +G L    P+ + + +  FV        
Sbjct: 177 GELYLKMTDH-----QQATDGGK---SARSIVAGALMAKAPSTMLQRVGIFVWAWPDG-- 226

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  + L  +R LGFP ++N   +      +  +          LP+  DG+V    
Sbjct: 227 --PNSIAQRLTGIRALGFPDISNWTHRVENVDEVEGWRERW--FHQALPFATDGIVVH-- 280

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               ++          W I+ K+   + ++ +  ++  IGRTG +  V  L PV +    
Sbjct: 281 SIPTRQGTDWLPELGDWAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKR 340

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++   + + ++ K             D+  GD V +  AG  +P++  +I   +      
Sbjct: 341 VSRVNIGSIEHWK-----------QTDVIAGDLVSISLAGLGVPRMDKVIWRVK------ 383

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                         V    P      +         C  Q L RL+   S+   N+ G G
Sbjct: 384 ------------ERVLPPLPDATHFNSLSCFRLTPQCRQQFLARLEWLSSKPVLNLSGAG 431

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +Q      ++            IF+       S  +++ + G G+      +      R 
Sbjct: 432 RQTWQQLIQAGSMTH-------IFSWLA---LSEEQLKAVPGIGEQRAHFFWQQFRLSRQ 481

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +  +R++ +LG+  +      +L     +  N+ Q    +++H+  DW    ++P VG  
Sbjct: 482 LPFKRWVKALGVP-IPERAMNTL-----TDDNWQQ----LLSHSLQDWQ---QLPGVGQT 528

Query: 608 IAQAIVEFYQNPRNICAVE 626
           +A+ I  + +       ++
Sbjct: 529 LARKIFSYLRQQEVRQLID 547


>gi|218697368|ref|YP_002405035.1| NAD-dependent DNA ligase LigB [Escherichia coli 55989]
 gi|300923458|ref|ZP_07139498.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 182-1]
 gi|301325330|ref|ZP_07218837.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 78-1]
 gi|307314268|ref|ZP_07593876.1| DNA ligase (NAD(+)) [Escherichia coli W]
 gi|254809144|sp|B7L771|LIGB_ECO55 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218354100|emb|CAV00658.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989]
 gi|300420285|gb|EFK03596.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 182-1]
 gi|300847857|gb|EFK75617.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 78-1]
 gi|306906091|gb|EFN36610.1| DNA ligase (NAD(+)) [Escherichia coli W]
 gi|315062935|gb|ADT77262.1| DNA ligase, NAD(+)-dependent [Escherichia coli W]
 gi|323376472|gb|ADX48740.1| DNA ligase (NAD(+)) [Escherichia coli KO11]
 gi|324116014|gb|EGC09940.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli E1167]
          Length = 560

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|170681126|ref|YP_001745947.1| NAD-dependent DNA ligase LigB [Escherichia coli SMS-3-5]
 gi|226737619|sp|B1LK84|LIGB_ECOSM RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|170518844|gb|ACB17022.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli SMS-3-5]
          Length = 560

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 232/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DAMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 179 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|284923709|emb|CBG36806.1| putative DNA ligase [Escherichia coli 042]
          Length = 560

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 122/620 (19%), Positives = 234/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLKREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++  LS + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|300815113|ref|ZP_07095338.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 107-1]
 gi|300532005|gb|EFK53067.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 107-1]
          Length = 560

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWE-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|323934808|gb|EGB31190.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli E1520]
          Length = 560

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF       R       +    N+     + LP+  DG+V +  
Sbjct: 231 LM----SDRLKELATAGFTLTQRYTRAVKNADEVARVRNDWWK--AELPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|91213164|ref|YP_543150.1| NAD-dependent DNA ligase LigB [Escherichia coli UTI89]
 gi|117625919|ref|YP_859242.1| NAD-dependent DNA ligase LigB [Escherichia coli APEC O1]
 gi|237703441|ref|ZP_04533922.1| NAD-dependent DNA ligase LigB [Escherichia sp. 3_2_53FAA]
 gi|91074738|gb|ABE09619.1| hypothetical DNA ligase-like protein YicF [Escherichia coli UTI89]
 gi|115515043|gb|ABJ03118.1| NAD-dependent DNA ligase [Escherichia coli APEC O1]
 gi|226902705|gb|EEH88964.1| NAD-dependent DNA ligase LigB [Escherichia sp. 3_2_53FAA]
 gi|294489423|gb|ADE88179.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli IHE3034]
 gi|323949886|gb|EGB45770.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli H252]
 gi|323954950|gb|EGB50729.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli H263]
          Length = 562

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 286

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQE---INNIIAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q+     +  A    +W  
Sbjct: 482 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQQPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|315285425|gb|EFU44870.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 110-3]
 gi|324008103|gb|EGB77322.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 57-2]
          Length = 561

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 180 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 232 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 285

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQE---INNIIAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q+     +  A    +W  
Sbjct: 481 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQQPGTGSGRARQVIEWKE 540

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 541 NAQIKKLGSWLAAQQITGFE 560


>gi|293417108|ref|ZP_06659735.1| DNA ligase [Escherichia coli B185]
 gi|291431139|gb|EFF04132.1| DNA ligase [Escherichia coli B185]
          Length = 562

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 232/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N+
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNQ 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++  +S + F Q++  I    A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRVALNASDERSWSQLLVSTEQFWQQLPGIGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|218702416|ref|YP_002410045.1| NAD-dependent DNA ligase LigB [Escherichia coli IAI39]
 gi|226737615|sp|B7NQ11|LIGB_ECO7I RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218372402|emb|CAR20276.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39]
          Length = 560

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 233/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DAMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 179 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +  + +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRHWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|312967984|ref|ZP_07782195.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 2362-75]
 gi|312287243|gb|EFR15152.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 2362-75]
          Length = 561

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 118/620 (19%), Positives = 231/620 (37%), Gaps = 92/620 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHR 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DAMMPPLN----------GAVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLKREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    N        LP+  DG+V +  
Sbjct: 232 LM----TDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKT--KLPFVTDGVVVRAA 285

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             +I  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KVQRVNIGSVRRWQ-----------EWNIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRSLHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNIIAHNND---DWLS 597
            R     R++ ++GI      + A   RS ++  LS + F Q++    +       +W  
Sbjct: 481 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQLPGTGSGRVRQVIEWKE 540

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 541 NAQIKKLGSWLAAQQITGFE 560


>gi|325499453|gb|EGC97312.1| NAD-dependent DNA ligase LigB [Escherichia fergusonii ECD227]
          Length = 547

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 117/621 (18%), Positives = 229/621 (36%), Gaps = 97/621 (15%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   Q +        +A +E+S L+ ++    D Y++  K  + D  YD L  R      
Sbjct: 1   MSSAQAV-CPDWPPARANEEISRLQLQLKQWSDTYWKEGKSTVEDHVYDQLSARLAQWQR 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            F D A SE    P++            V H +    + K+ +   L++++      W  
Sbjct: 60  CFGDNADSETMMPPIS----------GTVMHPVAHTGVRKLADKNALQQWMRARRDVW-- 107

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                    ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R IP++P+ +S  
Sbjct: 108 ---------VQPKVDGVAVTLVYRDGKLNQAISRGNGLKGEDWTQRLRLIPSVPQNVSGP 158

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240
           +     ++GE+Y+ +   +          +    N R+  +G++ R   TD    L  F+
Sbjct: 159 LANST-LQGEIYLQREGHIQQ--------QMGGMNARSKVAGMMMRHGNTDTLNSLGVFI 209

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
                  +       E LQ +   GF       R+ N+   +    +E       LP+  
Sbjct: 210 WAWPDGPQSMP----ERLQILTAAGFILTQQYTREVNSAREVEQIRSEWWKT--KLPFVT 263

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V +V +    +    +     W+ + K+        +  I   +G++G +  VA L 
Sbjct: 264 DGVVVRVGKEPDSRHW--QPGQGDWLAAWKYPPIAQVAEVNAIHFTVGKSGKIAVVASLA 321

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           P+ +    +    + +    +             DI  GD++LV  AG+ IP++ +++  
Sbjct: 322 PIKLDDKRVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDNVVWR 370

Query: 420 --ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
             ER                         P   +  +         C  Q + RL    S
Sbjct: 371 GTERTK---------------------PTPPENRFNSLTCYFASDVCREQFISRLVWLGS 409

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           +    ++G+G+       ++            IF+       +  +++N  G        
Sbjct: 410 KQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLLLTPEQLQNTPGIAKSKSAQ 459

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L+   N  R     R++ ++GI       A   +  + S+Q        +++    DW  
Sbjct: 460 LWHQFNLARKQPFTRWLMAMGIPL---TQAALKSHLFDSWQQ-------VMSQTKQDWQ- 508

Query: 598 LIRVPLVGDIIAQAIVEFYQN 618
             ++P  G   A  ++++  +
Sbjct: 509 --QLPGTGSRRASQVIKWRDD 527


>gi|218560719|ref|YP_002393632.1| NAD-dependent DNA ligase LigB [Escherichia coli S88]
 gi|166226370|sp|A1AHH8|LIGB_ECOK1 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|166226373|sp|Q1R4U5|LIGB_ECOUT RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737614|sp|B7MFK8|LIGB_ECO45 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218367488|emb|CAR05270.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88]
 gi|307628720|gb|ADN73024.1| NAD-dependent DNA ligase LigB [Escherichia coli UM146]
          Length = 560

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQE---INNIIAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q+     +  A    +W  
Sbjct: 480 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQQPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|323975134|gb|EGB70239.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli TW10509]
          Length = 560

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 124/620 (20%), Positives = 238/620 (38%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F + +R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNESR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PL             V H +    + K+ +   LR ++      W          
Sbjct: 81  DAMMPPLA----------GTVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  IP++P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVPQTVSGPL-VNSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R+  +G+L R   +D    L  FV      ++
Sbjct: 179 GEIFLKREGHIQQ--------QMGGINARSKVAGLLMRQGNSDTLNSLGVFVWAWPDGTQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + LQ++   GF +     R  N    +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLQQLTTAGFTLTQMYTRAVNNADEVERIRNEWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ +++    ER   
Sbjct: 342 KVQRVNVGSVRRWQ-----------EWDIAPGDKILVSLAGQGIPRIDNVVWRGTERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCREQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G      T L+   N 
Sbjct: 430 GIGEAGWRALHQTHR-------FEHIFS---WLLLTPEQLQNTPGIAKSKSTQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|170767052|ref|ZP_02901505.1| NAD(+)-dependent DNA ligase LigB [Escherichia albertii TW07627]
 gi|170124490|gb|EDS93421.1| NAD(+)-dependent DNA ligase LigB [Escherichia albertii TW07627]
          Length = 561

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 115/620 (18%), Positives = 215/620 (34%), Gaps = 98/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A  E+S L+Q+I   DD Y++  +  I DS YD L  R       F +    
Sbjct: 22  CPAWSPAKAHDEISRLQQQIKQWDDDYWKEGQSTIEDSIYDQLSARLAQWQRCFGEETNR 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PL+            V H +    + K+ +   + +++      W          
Sbjct: 82  DAIAPPLH----------GTVMHPVAHTGVRKLTDKNAVSQWMRGRGDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I ++P  +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYHDGKLSQAISRGNGLKGEDWTQKVRQISSVPHSVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R+  +G++ R +       L  F+        
Sbjct: 180 GEIFLQRESHIQQ--------QMGGMNARSKVAGLMMRQDNAGTLNSLGVFIWAWPDG-- 229

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
              +   + L  +   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 230 --PQSMTDRLHLLATAGFALTQRYTRAVKNADEVECARNEWWK--AKLPFVTDGVVVRGA 285

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E      L  +A    W+ + K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESSHWLPGQA---DWLAAWKYQPVAQVAGVNAIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++L+  AG+ IP++ D++    ER   
Sbjct: 343 RVQRVNIGSVRRWQ-----------EWDIAPGDQILISLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    +E
Sbjct: 391 --------------------PVPPENRFNSLTCYFASDVCREQFISRLVWLGSKQVLGLE 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++               L      +  ++ N  G        L+   N 
Sbjct: 431 GIGEAGWRTLHQTHR----------FEHLFSWLSLTPDQLHNTPGIAKSKSEQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R     R++ ++GI       A   A    S++   Q                 ++P  
Sbjct: 481 ARKQPFTRWVMAMGIPL---TQAALNASDERSWEQLLQRTE----------QYWQQLPGT 527

Query: 605 GDIIAQAIVEFYQNPRNICA 624
           G   A  ++E+  N +    
Sbjct: 528 GARRASKVMEWKDNAQIKML 547


>gi|221134260|ref|ZP_03560565.1| DNA ligase (NAD(+)) [Glaciecola sp. HTCC2999]
          Length = 643

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 151/708 (21%), Positives = 280/708 (39%), Gaps = 112/708 (15%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDA-LKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
             L   +   +   Y+   P++ D+ YD  L     A     P L           K+  
Sbjct: 36  EQLIAVLEATN-ACYRAGFPLVEDAFYDHHLLSALQAREPDHPFLL----------KVEP 84

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK--KDDNSIFFTLEPKIDGTM 138
           E+      +T     LS +K ++I ++ K++TRI +   +     + +   + PK+DG  
Sbjct: 85  EIVSG-KTITLPQKMLSTDKAYSITEIEKWVTRIKKAADELSIPHSDVNIRITPKLDGYA 143

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
               Y+ G  +Y   RGDG  G+D++        +      N  E     GE+ ISK  F
Sbjct: 144 A---YDDGNTLY--TRGDGVRGQDITRAFTRGLAV-----ANQGERGLGPGEIVISKQYF 193

Query: 199 LALNDEMIAVGRKPYANPRNAASGIL--RRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
                +        + N RN  + I+  +++ P+ +                        
Sbjct: 194 DTFLSDQ-------FENSRNIQAAIIAEKKIEPSVVK----------------------- 223

Query: 257 MLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +Q   C+ +P     N     +     V     ++ I   + YDIDG++ +     ++ 
Sbjct: 224 AIQDEACVFYPFALLPNWTGLIDVLAEDVEA--RIEPIWQAVDYDIDGVILETTHPDIKA 281

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG      RW I+ K  ++ A   +L +  Q  RTG ++PVA L P  + GA I+ AT+
Sbjct: 282 HLGATRHHHRWQIAFKVNDESAEVEVLSVTPQTSRTGRVSPVAELVPTKLSGATISRATV 341

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           H+ + ++              +  G  V + R+G VIPK+  +I       A     P  
Sbjct: 342 HHYNMVQS-----------NGVGPGAIVQLVRSGLVIPKIEKVIT------AVTPQLPDA 384

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S ++ + +           C     C AQ+   L HF  +   N +G G + ++ 
Sbjct: 385 CPSCHSHLIWEADHLI--------CPNKNDCPAQRENTLVHFF-KTLGNNDGFGPKVVEK 435

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN--ISLE 551
             ++      ++   DI+ L      +        GFG+ +  NL + +N  R+  I   
Sbjct: 436 LCQNG-----VKHIHDIYALGPVDLMA-------WGFGEKTALNLVEQLNVSRSVAIEDW 483

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+ + GI  +G      L +++   + F   ++ ++     D  + +    + + +A  
Sbjct: 484 RFLAAFGITRLGGGNGEKLLQHHTLSELFDLTVDAMVEI---DGFAQLSAEAIVEGLANV 540

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             EF++        E     +            + +  K++VFTG++    R   +++  
Sbjct: 541 KTEFFKVY------ELGFNLIVTPKLSESDLADTVLFGKQVVFTGSMTSGSRSDMEKHAK 594

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLL 718
            LGA V   +S  T  +I GD  G+ K+  A+  GV ++ E ++L ++
Sbjct: 595 TLGAKVGKSVSGNTTYLITGDKVGANKINAARDKGVTVLTELEYLAMI 642


>gi|300898582|ref|ZP_07116912.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 198-1]
 gi|300357745|gb|EFJ73615.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 198-1]
          Length = 561

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 232/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNE-TP 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DVMMPPLN----------GAVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLKREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    N      + LP+  DG+V +  
Sbjct: 232 LM----TDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWK--AKLPFVTDGVVVRAA 285

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKTIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++  LS + F Q++       A    +W  
Sbjct: 481 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQLPGTGSGRARQVIEWKE 540

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 541 NAQIKKLGSWLAAQQITGFE 560


>gi|312948208|gb|ADR29035.1| NAD-dependent DNA ligase LigB [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 560

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 122/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLQRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            I    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KIQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|218707281|ref|YP_002414800.1| NAD-dependent DNA ligase LigB [Escherichia coli UMN026]
 gi|293407270|ref|ZP_06651194.1| DNA ligase B [Escherichia coli FVEC1412]
 gi|298383016|ref|ZP_06992611.1| DNA ligase [Escherichia coli FVEC1302]
 gi|226737618|sp|B7NEV1|LIGB_ECOLU RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218434378|emb|CAR15303.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026]
 gi|291426081|gb|EFE99115.1| DNA ligase B [Escherichia coli FVEC1412]
 gi|298276852|gb|EFI18370.1| DNA ligase [Escherichia coli FVEC1302]
          Length = 560

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 232/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNE-TP 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLKREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    N      + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKTIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++  LS + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|296100486|ref|YP_003610632.1| NAD-dependent DNA ligase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295054945|gb|ADF59683.1| NAD-dependent DNA ligase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 556

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 125/612 (20%), Positives = 220/612 (35%), Gaps = 97/612 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A KE+++L  +I   DD Y+Q     + D  YD L  R     H F      
Sbjct: 20  CPVWSQARAEKEIATLSAQIKRWDDAYWQQGISEVNDEVYDQLNGRLKQWQHCFGH---- 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+         +     ++ H +    + K+ + E+L +++      W          
Sbjct: 76  ASPD-------AALPALTGRIKHPVAHTGVHKVSSKEELGQWMHARRNLW---------- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  G    A  RGDG  GED ++ +R IP++P+ L         ++
Sbjct: 119 -MQPKVDGVAVTLVYRGGTLAQAISRGDGLKGEDWTSQVRLIPSVPQHL-YGALANSVLQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE++  +      N     +G     N R   +G + R       R +  F+       +
Sbjct: 177 GELFWQRE-----NHIQQQMGGM---NARAKVAGAMMRQQDNAFLREVGVFIWAWPDGPK 228

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                    L ++   GF +             +    +   +  + LP+  DG+V +  
Sbjct: 229 EMKT----ALAELSDAGFTLTARYTLPVEHIEAVEKQRSAWHT--AALPFATDGIVVRSA 282

Query: 308 EFSLQKQL--GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +    +    GE +    W+++ K+        + DI   +GRTG +  VA LEPV +  
Sbjct: 283 DELPGENWLPGEGS----WVVAWKYPPVAQVAEVRDIHFTVGRTGKIAVVAGLEPVRLDD 338

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +   +L +    + L           DI  GD++ V  AG+ IP+   ++   R  D 
Sbjct: 339 KQVQRVSLGSVGRWQRL-----------DIAPGDQIQVSLAGQGIPRFDKVVW--RGTDR 385

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           Q    P   P   S      +P                C  Q   RL    S+   +I G
Sbjct: 386 QKPEPPV--PQYHSLSCFYASP---------------ECMEQFFARLTWLSSKQGLDIAG 428

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG+      +++            IF+       +  +++   GF       L+   N  
Sbjct: 429 LGESGWRALWQA-------HRFEHIFS---WLLLTQAQLQTTPGFSAARGLALWHQFNLV 478

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     R+I ++G+       A   A   LS+Q   Q             +    +P  G
Sbjct: 479 RERPFIRWIMAMGVPL---AQATLKAAGELSWQTMHQR----------SAMDWQTLPGTG 525

Query: 606 DIIAQAIVEFYQ 617
           +  A+ IV +  
Sbjct: 526 EEKARQIVNWLH 537


>gi|254038848|ref|ZP_04872900.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|290497|gb|AAA62000.1| f562 [Escherichia coli]
 gi|226838813|gb|EEH70840.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
          Length = 562

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 286

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    ++    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|194435653|ref|ZP_03067756.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli 101-1]
 gi|194425196|gb|EDX41180.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli 101-1]
          Length = 562

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 286

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    ++    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|300919785|ref|ZP_07136260.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 115-1]
 gi|300413138|gb|EFJ96448.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 115-1]
          Length = 561

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 232 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 285

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    ++    ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 481 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 540

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 541 NAQIKKLGSWLAAQQITGFE 560


>gi|157158891|ref|YP_001465128.1| NAD-dependent DNA ligase LigB [Escherichia coli E24377A]
 gi|331670488|ref|ZP_08371327.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA271]
 gi|331679739|ref|ZP_08380409.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H591]
 gi|157080921|gb|ABV20629.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E24377A]
 gi|331062550|gb|EGI34470.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA271]
 gi|331072911|gb|EGI44236.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H591]
          Length = 562

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|89110365|ref|AP_004145.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111628|ref|NP_418104.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|170083154|ref|YP_001732474.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238902738|ref|YP_002928534.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|401583|sp|P25772|LIGB_ECOLI RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737617|sp|B1X980|LIGB_ECODH RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|259494925|sp|C4ZXN9|LIGB_ECOBW RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|85676396|dbj|BAE77646.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr.
           W3110]
 gi|87082305|gb|AAC76671.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|169890989|gb|ACB04696.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238860823|gb|ACR62821.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|260447334|gb|ACX37756.1| DNA ligase (NAD(+)) [Escherichia coli DH1]
 gi|309704049|emb|CBJ03395.1| putative DNA ligase [Escherichia coli ETEC H10407]
 gi|315138229|dbj|BAJ45388.1| NAD-dependent DNA ligase LigB [Escherichia coli DH1]
 gi|332345636|gb|AEE58970.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 560

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    ++    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|170018123|ref|YP_001723077.1| NAD-dependent DNA ligase LigB [Escherichia coli ATCC 8739]
 gi|253771511|ref|YP_003034342.1| NAD-dependent DNA ligase LigB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163575|ref|YP_003046683.1| NAD-dependent DNA ligase LigB [Escherichia coli B str. REL606]
 gi|312972067|ref|ZP_07786241.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 1827-70]
 gi|189046590|sp|B1IYV3|LIGB_ECOLC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|169753051|gb|ACA75750.1| DNA ligase (NAD(+)) [Escherichia coli ATCC 8739]
 gi|242379171|emb|CAQ33973.1| DNA ligase [Escherichia coli BL21(DE3)]
 gi|253322555|gb|ACT27157.1| DNA ligase (NAD(+)) [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975476|gb|ACT41147.1| NAD-dependent DNA ligase LigB [Escherichia coli B str. REL606]
 gi|253979632|gb|ACT45302.1| NAD-dependent DNA ligase LigB [Escherichia coli BL21(DE3)]
 gi|310334444|gb|EFQ00649.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 1827-70]
 gi|323959895|gb|EGB55543.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli H489]
 gi|323971289|gb|EGB66534.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli TA007]
          Length = 560

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    ++    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|331649461|ref|ZP_08350547.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli M605]
 gi|331041959|gb|EGI14103.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli M605]
          Length = 562

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMIPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 181 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 286

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQTHR-------FEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|193063789|ref|ZP_03044876.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E22]
 gi|192930504|gb|EDV83111.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E22]
          Length = 577

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 39  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 97

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 98  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 137

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 138 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 195

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 196 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 247

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 248 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 302 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 359 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 406

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 407 --------------------PTPPENRFNSLTCYFASEVCQEQFISRLVWLGSKQVLGLD 446

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 447 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 496

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 497 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVTEWKE 556

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 557 NAQIKKLGSWLAAQQITGFE 576


>gi|331685309|ref|ZP_08385895.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H299]
 gi|331077680|gb|EGI48892.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H299]
          Length = 561

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 231/620 (37%), Gaps = 92/620 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGIYDQLSARLTQWQRCFGEETHR 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DAMMPPLN----------GAVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLKREGHIQ--------KQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    N        LP+  DG+V +  
Sbjct: 232 LM----TDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKT--KLPFVTDGVVVRAA 285

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVARVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRSLHQTHR-------FEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNIIAHNND---DWLS 597
            R     R++ ++GI      + A   RS ++  LS + F Q++    +       +W  
Sbjct: 481 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQLPGTGSGRVRQVIEWKE 540

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 541 NAQIKKLGSWLAAQQITGFE 560


>gi|300822417|ref|ZP_07102557.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 119-7]
 gi|309797611|ref|ZP_07691999.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 145-7]
 gi|300525064|gb|EFK46133.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 119-7]
 gi|308118798|gb|EFO56060.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 145-7]
          Length = 561

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 232 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 285

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 481 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 540

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 541 NAQIKKLGSWLAAQQITGFE 560


>gi|157163128|ref|YP_001460446.1| NAD-dependent DNA ligase LigB [Escherichia coli HS]
 gi|157068808|gb|ABV08063.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli HS]
          Length = 562

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDVYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 286

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    ++    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|194430072|ref|ZP_03062577.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B171]
 gi|194411899|gb|EDX28216.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B171]
          Length = 577

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 39  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 97

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 98  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 137

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 138 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 195

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 196 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 247

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 248 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 302 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 359 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 406

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 407 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 446

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 447 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 496

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 497 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVTEWKE 556

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 557 NAQIKKLGSWLAAQQITGFE 576


>gi|242241341|ref|YP_002989522.1| NAD-dependent DNA ligase LigB [Dickeya dadantii Ech703]
 gi|242133398|gb|ACS87700.1| DNA ligase (NAD(+)) [Dickeya dadantii Ech703]
          Length = 575

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 127/620 (20%), Positives = 232/620 (37%), Gaps = 89/620 (14%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +   + S  +A +E+  L  +++  D  YY   +  I D  YD L++R +     F    
Sbjct: 24  VSCPSWSALRAEQEMERLGHQLAVWDRAYYGAGESQIDDHTYDQLRKRLETWQACF---- 79

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
            ++    P+         +  K  H +    L+K+    +LR++I +    W        
Sbjct: 80  HADQTAFPI------PLPTEGKTPHPVAHTGLKKLSEAGELRRWIAQHRGLW-------- 125

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              ++PKIDG  +T+ YE+GK V A  RG+G+ GED +  +R +P +P+ L    P+ + 
Sbjct: 126 ---VQPKIDGVAVTLVYEQGKLVSAVSRGNGYRGEDWTEKVRRMPQVPQQLPT-APDQLV 181

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           ++GE+Y+         D          AN R   +G +RR  P+ +   +  FV      
Sbjct: 182 LQGELYLGMPGHRQQQD--------GGANARARVAGEMRRSQPSSLASRIGVFVWEWPDG 233

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +       E L ++R LGF +     Q  T     + + E +  R  LP+  DG+V + 
Sbjct: 234 PQSMP----ERLSQLRSLGFEMTERYTQPITTLEDAARWRE-RWYREPLPFATDGVVLRQ 288

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            +    +    + +   W ++ K+   +  T +  ++I +GRTG +  V  L+P+ +   
Sbjct: 289 AQEPAARYW--QNKPAEWAVAWKYPLTRLVTEVEGVEIAVGRTGNMAVVLTLQPLTLDDK 346

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I    + +    +             D+  GD+V +  AG+ IP++  ++   R    +
Sbjct: 347 TIRRVNVGSISRWR-----------QWDVLPGDQVSIGLAGQGIPRLDAVVW--RTSVRE 393

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P S P             L  + G             C +Q + RL     +    + G+
Sbjct: 394 PMSVPEN---VGFSEFTCLTWREG-------------CRSQFIARLVWLSGKRGLGLTGV 437

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+               +        L   Q           G G      +Y    + R
Sbjct: 438 GEGVWQRLVLRGMLPDVVS----WLALTPAQLIGLG------GLGATQGEKVYQQFQRAR 487

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L R++ +LGI       A   A + +S          +IA          +   +G 
Sbjct: 488 RQPLSRWLMALGIP---VPRAAQGALHGVS----------LIALQQRSLAEWRQFSGIGV 534

Query: 607 IIAQAIVEFYQNPRNICAVE 626
             A  I +F   P     ++
Sbjct: 535 ARAGNIRDFLHQPEIAALLQ 554


>gi|218691930|ref|YP_002400142.1| NAD-dependent DNA ligase LigB [Escherichia coli ED1a]
 gi|254809145|sp|B7N287|LIGB_ECO81 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218429494|emb|CAR10458.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a]
          Length = 560

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 122/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            I    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KIQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSKEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|70733074|ref|YP_262847.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens Pf-5]
 gi|123761963|sp|Q4K4I6|LIGB_PSEF5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|68347373|gb|AAY94979.1| DNA ligase, NAD-dependent, putative [Pseudomonas fluorescens Pf-5]
          Length = 556

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 134/617 (21%), Positives = 239/617 (38%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                + +A  E+++L+Q++   D  YY+  + ++ D  YD  ++R       FP   R+
Sbjct: 20  CPDWPVPRATDEITALQQQLQRWDSSYYRDGRSLVADELYDQARQRLLTWRQCFPQAPRA 79

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PL   GG        + H IP   +EK+ +   +  ++      W          
Sbjct: 80  --MDQPLLGAGG-------SIRHPIPHTGVEKLADANAVTGWLKGRDDIW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             +PK+DG  +T+ Y +G+F  A  RGDG  G D +     I  IP+ L    P  + ++
Sbjct: 121 -AQPKVDGVAVTLIYHRGQFQQALSRGDGVHGHDWTRAAWQIEAIPKRL--PRPVDLLLQ 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+Y+     +          R      RN  +G + R   T      +  FV    +  
Sbjct: 178 GELYLRLEQHVQ--------ARSGSLKARNRVAGWMARKQLTAAEAAQIGLFVWDWPQG- 228

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E L+++  LGF       +          +   +  RS LP+  DG++ +  
Sbjct: 229 ---PATLSERLEQLADLGFAEPREYSRPVGGFADAQQWRA-RWYRSPLPFASDGIILRQS 284

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                ++   +A++P W+ + K+   Q    +  +D +IGRTG +TP+  +EPV +    
Sbjct: 285 RRPAAERW--QAKAPYWIAAWKYPYAQVLASVRQVDFRIGRTGRITPLLEIEPVTLDDRQ 342

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I   +L +    + L           DI  GD+V +  AG  IP++ ++++  R    Q 
Sbjct: 343 IRRVSLGSLQRWRSL-----------DIVPGDQVAISLAGLSIPRLDEVVL--RSTLRQS 389

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P          +    P  G             C  Q L RL    S+   N++ +G
Sbjct: 390 IQPPR---EADFHFLSCWQPSPG-------------CEEQFLARLTWLSSKQGLNLQNIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +      ++      I+   D  TL + +        NI GFGD S   L +S++  R 
Sbjct: 434 SRTWARLVETGR----IKGLLDWLTLDQAELA------NIAGFGDRSSKRLLESLHSARQ 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ +LGI   G+              + +     +   N+ DW +      +G  
Sbjct: 484 QPFPRWLKALGIPPSGSA-------------DLSGPWQALAMKNSLDWQNEA---GIGAE 527

Query: 608 IAQAIVEFYQNPRNICA 624
            A  +V F++ P  +  
Sbjct: 528 RAAQLVAFFRAPEVLAL 544


>gi|171855259|sp|A7ZTJ9|LIGB_ECO24 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|193070347|ref|ZP_03051289.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E110019]
 gi|192956286|gb|EDV86747.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E110019]
          Length = 577

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 39  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 97

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 98  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 137

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 138 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 195

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 196 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 247

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 248 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 302 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 359 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 406

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 407 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 446

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 447 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 496

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 497 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 556

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 557 NAQIKKLGSWLAAQQITGFE 576


>gi|330909708|gb|EGH38222.1| DNA ligase , LigB [Escherichia coli AA86]
          Length = 560

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMIPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|172044492|sp|A8A6A9|LIGB_ECOHS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDVYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    ++    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|26250293|ref|NP_756333.1| NAD-dependent DNA ligase LigB [Escherichia coli CFT073]
 gi|26110723|gb|AAN82907.1|AE016769_22 Hypothetical DNA ligase-like protein yicF [Escherichia coli CFT073]
          Length = 562

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 125/619 (20%), Positives = 230/619 (37%), Gaps = 94/619 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 181 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 286

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            I    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KIQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQTHR-------FEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDII-AQAIVEF 615
             ++  +G  + AQ I  F
Sbjct: 542 NAQIKKLGSWLSAQQITGF 560


>gi|126174865|ref|YP_001051014.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
 gi|166216240|sp|A3D5Y2|DNLJ_SHEB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|125998070|gb|ABN62145.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
          Length = 648

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 158/724 (21%), Positives = 301/724 (41%), Gaps = 108/724 (14%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           K+  I I   SI++  +    L   +   +  Y +   P+I D  YD+   +        
Sbjct: 24  KKLEIAISKESIDELSE--DELLALLKVTNALY-RSGFPVIEDILYDSFWNK-------- 72

Query: 63  PDLARSEDPNGP-LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK- 120
                   PN P +  +  E+      V      LS +K ++ E+++K++ RI +  ++ 
Sbjct: 73  ---FALNHPNHPFITSVETEVLNLGKTVALPQKMLSTDKAYSKEEIKKWLDRILKAAEEL 129

Query: 121 -KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACI-RAIPTIPRVLS 178
             D N I   + PK+DG      ++ G+ +Y   RGDG  G+DVS    R +  +     
Sbjct: 130 DIDTNEIEIRITPKLDGYAA---FDDGERLY--TRGDGVKGQDVSRAFERGLKVV----- 179

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF 238
               E     GE+ I+K  F            + + N RN  + I+   N  +  R L  
Sbjct: 180 -RNSERGLGAGEIVINKAYF-------EKKLSQYFENSRNIQAAIIAEKNVDE--RVL-- 227

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI-RSTLPY 297
                            E +++  C+  P          +  +++ ++ +     +++ Y
Sbjct: 228 -----------------EAIKEGACVFHPFAVLPNWTGNYQDLMTDFDGIIEQVWNSVEY 270

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           D+DG++ +  +  +++ +G   +  RW I+ K  ++ A   ++ +  Q  RTG +TPVA 
Sbjct: 271 DVDGVILEATDTRIKEHMGANRKFHRWQIAFKINDEVAEVEVISVTPQTSRTGRVTPVAE 330

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L P  I GA+I+  T+H+ + +K              +  G  V + R+G VIPK+  +I
Sbjct: 331 LVPTRISGAMISRVTVHHYNMVKI-----------NGVGPGAIVQIVRSGLVIPKIEKVI 379

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
                        P  CP C+S ++ + +           C     C AQ    L HF  
Sbjct: 380 KPVDP------QMPELCPSCKSHLLWESDHLV--------CPNKSDCPAQTENTLVHFFK 425

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
             A N +G G + ++           ++    ++ L+  Q         + GFG+ +  N
Sbjct: 426 TLANN-DGFGPKNIEKLANLG-----VKHIHQMYDLKPHQFA-------MYGFGEKTSKN 472

Query: 538 LYDSINKRRNISL--ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
           LYD +   +NI +   RF+ + G+  +G      L ++Y   + F   + +I   N    
Sbjct: 473 LYDQLQASKNIEIEDWRFLSAFGVSRLGGGNCEKLLQHYSLRELFEATVEDIAELNG--- 529

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
            + +    +   +A    EF++              ++P     E  ++S +  K +VFT
Sbjct: 530 FARVSAEAIVKGLANIKEEFFKVYD-----LGFNLSITPKQSELES-LASPLTGKIVVFT 583

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
           G + + +R   +++   LGA V   ++  T  +I G   G +K+  A++ GVK+++E+++
Sbjct: 584 GKMLQGKRSDMEKHAKALGAKVGTSVTSNTTYLIAGLKVGETKINDAKEKGVKVLSEQEY 643

Query: 715 LFLL 718
           L L+
Sbjct: 644 LDLI 647


>gi|260846568|ref|YP_003224346.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
 gi|257761715|dbj|BAI33212.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
          Length = 560

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVTEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|227883837|ref|ZP_04001642.1| NAD-dependent DNA ligase LigB [Escherichia coli 83972]
 gi|300984900|ref|ZP_07177188.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 45-1]
 gi|301047437|ref|ZP_07194516.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 185-1]
 gi|227839115|gb|EEJ49581.1| NAD-dependent DNA ligase LigB [Escherichia coli 83972]
 gi|300300645|gb|EFJ57030.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 185-1]
 gi|300408329|gb|EFJ91867.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 45-1]
 gi|307555765|gb|ADN48540.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli ABU 83972]
 gi|315292916|gb|EFU52268.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 153-1]
          Length = 561

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 125/619 (20%), Positives = 230/619 (37%), Gaps = 94/619 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 180 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 232 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 285

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            I    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KIQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 481 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 540

Query: 598 LIRVPLVGDII-AQAIVEF 615
             ++  +G  + AQ I  F
Sbjct: 541 NAQIKKLGSWLSAQQITGF 559


>gi|119945995|ref|YP_943675.1| DNA ligase (NAD(+)) [Psychromonas ingrahamii 37]
 gi|166216251|sp|A1SX61|DNLJ_PSYIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119864599|gb|ABM04076.1| DNA ligase (NAD(+)) [Psychromonas ingrahamii 37]
          Length = 649

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 156/696 (22%), Positives = 284/696 (40%), Gaps = 103/696 (14%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
           + +Y+ ++ II DS YDA            P L            +  E+      V   
Sbjct: 50  NAFYRSAEQIINDSTYDAFLSEFSTYNPDHPYLLT----------VEPEVLADSKTVPLP 99

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTLEPKIDGTMITIRYEKGKFVY 150
              LS +K ++ E+++K+I R+ +   +    ++ I   + PK+DG      Y+ G  +Y
Sbjct: 100 KKMLSTDKAYSFEEIKKWIDRLLKAAIEVGVSESEIQIKVTPKLDGYAA---YDDGISLY 156

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
              RGDG  G+D++        +      N  +     GE+ I K+ F         V  
Sbjct: 157 --TRGDGARGQDITRAFNKGLQV-----ANNGDRGLGPGEIVIKKSYF-------DTVLS 202

Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
             + N RN  + I+      +  +        +G                +      + +
Sbjct: 203 DKFENSRNIQAAIIAEKKVDESIQK----AIDVGACVFFPFLS-------LENW---IGH 248

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
                  F  IV        + S + YDIDG+V +V   +L++ +G      RW I+ K 
Sbjct: 249 YTEILVDFESIVE------KMWSAVDYDIDGVVLEVTNETLKEHMGATRHHHRWQIAFKV 302

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
             + A  ++L++  Q  RTG +TPVA LEP  + GA I+ AT+H+ + +K          
Sbjct: 303 NAESAEVKVLNVTPQTSRTGRVTPVAELEPTKLSGATISRATVHHYNMVKT--------- 353

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
               +  G  V + R+G VIPK+  +I       A+       CP C + ++ + +    
Sbjct: 354 --NGVGPGAIVQLVRSGLVIPKIEKVIKAVEPQLAKE------CPSCGTHLIWESDHLV- 404

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
                  C     C AQ    L HF  +   N +G G + ++   +     F I+   +I
Sbjct: 405 -------CPNKTDCPAQTENTLVHFF-KTLGNNDGFGPKVIEKLHE-----FGIKKIHEI 451

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL--ERFIFSLGIRHVGAEIAR 568
           + L++    S        GFGD +  NL + +   R++ +   RF+ + G+  +      
Sbjct: 452 YELKQESFVSF-------GFGDKTAQNLVEQLQVSRDVEIEDWRFLAAFGVSRLAGGNCE 504

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA-VEA 627
            L +++ S  +  +               L+++     + A AIVE   N +     + A
Sbjct: 505 KLLQHH-SLDSLFEAT----------VEDLVQLDGFAQVSADAIVEGLANIKEEFLKLSA 553

Query: 628 LLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           L   ++ +    EK    + +  K +VFTG + +  R   ++    LGA V+  ++ KT 
Sbjct: 554 LNFNLTITPKASEKSPGETPVFGKIIVFTGAMTQGSRGDMEKQAKALGAKVAKSVTGKTS 613

Query: 687 IIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQY 721
           +++ GD  G+ K+  A+  GV++++E  +L L+  Y
Sbjct: 614 LLVTGDKVGANKINAARDKGVQVLSELDYLALISTY 649


>gi|300927922|ref|ZP_07143481.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 187-1]
 gi|300464014|gb|EFK27507.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 187-1]
          Length = 561

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 118/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 232 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 285

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + R+    ++    ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRVVWLGAKQVLGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 481 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 540

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 541 NAQIKKLGSWLAAQQITGFE 560


>gi|166226372|sp|Q8FC83|LIGB_ECOL6 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 125/619 (20%), Positives = 230/619 (37%), Gaps = 94/619 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            I    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KIQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDII-AQAIVEF 615
             ++  +G  + AQ I  F
Sbjct: 540 NAQIKKLGSWLSAQQITGF 558


>gi|56415629|ref|YP_152704.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364556|ref|YP_002144193.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81821323|sp|Q5PC41|LIGB_SALPA RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737626|sp|B5BI22|LIGB_SALPK RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|56129886|gb|AAV79392.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096033|emb|CAR61620.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 561

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 119/631 (18%), Positives = 225/631 (35%), Gaps = 94/631 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTMHPVAHTGVRKLADRQAVEQWVRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+ A+G+L R +       L  F+        
Sbjct: 180 GEIFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +      A      +        +  S LP+  DG+V ++ 
Sbjct: 232 NMP----ERLSQLAKAGFSLTKKYSLAVKDASEVERARQSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 286 KEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSR------ 386

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT-GGLACSAQQLERLKHFVSRDAFNIEGL 486
                          R      G    +  C      C  Q + RL    SR A  ++G+
Sbjct: 387 --------------ERSKPVPPGSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGM 432

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+       ++            IF+       ++ +I N  G        ++      R
Sbjct: 433 GEASWRALHQTHR-------FEHIFSWLA---LTSAQIANTPGVAKGKSEQIWRQFYLAR 482

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S  R+I ++ I       A   A    S++                     ++P  G+
Sbjct: 483 RQSFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGE 529

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
             A  ++++  NP+       L  +  P  G
Sbjct: 530 RRAGRVIDWRNNPQINALSRWLAAQHIPGFG 560


>gi|332282582|ref|ZP_08394995.1| NAD-dependent DNA ligase LigB [Shigella sp. D9]
 gi|323944100|gb|EGB40180.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli H120]
 gi|332104934|gb|EGJ08280.1| NAD-dependent DNA ligase LigB [Shigella sp. D9]
          Length = 562

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|256021349|ref|ZP_05435214.1| NAD-dependent DNA ligase LigB [Shigella sp. D9]
          Length = 560

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|229593084|ref|YP_002875203.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens SBW25]
 gi|257096558|sp|C3K3F7|LIGB_PSEFS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|229364950|emb|CAY53062.1| putative exported DNA-ligase protein [Pseudomonas fluorescens
           SBW25]
          Length = 554

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 137/624 (21%), Positives = 239/624 (38%), Gaps = 98/624 (15%)

Query: 8   PIEALSI---EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           P    +    ++AR  +S+L ++I   DD Y++  +  + D  YD  ++R       FP 
Sbjct: 14  PCWVWAQACSDEARAHVSTLAEQIRQWDDSYHRLGQSPVSDELYDQARQRLAQWHQCFP- 72

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
            A +  PN PL         S     H +    LEK+ +   +  ++      W      
Sbjct: 73  -APTATPNTPL-------ASSRGAQPHPVAHTGLEKLLDEHAVDAWLGTRKDVW------ 118

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PK+DG  +T+ Y++G+      RGDG  G D SA  R IP I + L    P  
Sbjct: 119 -----IQPKVDGVAVTLVYQQGRLRQVISRGDGVMGHDWSASARKIPGIVQQLPD--PID 171

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243
           + ++GE+Y   +D +               N R+  +G++ R +  D     +  FV   
Sbjct: 172 LVLQGELYWRLDDHVQ--------SASGGLNARSKVAGLMNRKHLGDTDAAGIGLFVWAW 223

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            +    F     E L  ++  GF       Q          +          LP+  DG+
Sbjct: 224 PQGPAAF----TERLSTLKRWGFTDTQRFSQPIRNISEAAHWRAYWYG--HPLPFASDGV 277

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V    + +  ++   +  +P W  + K+   +A   + D+  +IGRTG +TP+  LEPV 
Sbjct: 278 VLHQAQHAPAERW--QVSTPYWAAAWKYPTTKALALVRDVQFKIGRTGRITPMLELEPVR 335

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +    I+  +  +    + L           DIR GD V +  AG+VIP++ ++I+    
Sbjct: 336 LDDRQISRVSAGSLKRWQSL-----------DIRPGDHVSISLAGQVIPRLDEVILRSST 384

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
               P   P                  GK  A         C  Q L RL          
Sbjct: 385 RADLPVPNP------------------GKFHALSCWQLDPGCEEQLLARLSWLSGNQGLA 426

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           +  +G++      ++   A  +    D  TL       T ++ NI GFGD +   + DS 
Sbjct: 427 LPHIGRETWSVLIQAGLIAGFL----DWLTL------DTAELANIDGFGDRTRARVVDSF 476

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           +  R     +++ +LG+       AR+         N   +   ++A +   WL+   + 
Sbjct: 477 HSARQRPFAQWLKALGVP----PAARN---------NLEGDWQTLVARDTQAWLA---ID 520

Query: 603 LVGDIIAQAIVEFYQNPRNICAVE 626
            +G   A  +  F+++P      E
Sbjct: 521 GIGPGRAAQLSAFFRDPHVQALAE 544


>gi|187775663|ref|ZP_02992667.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188024760|ref|ZP_02997228.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4113]
 gi|189010103|ref|ZP_02804810.2| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189401811|ref|ZP_03006485.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189402714|ref|ZP_03006814.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189403713|ref|ZP_03007195.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189404723|ref|ZP_02810531.2| NAD-dependent DNA ligase adenylation domain [Escherichia coli
           O157:H7 str. EC869]
 gi|189405711|ref|ZP_03007918.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC508]
 gi|208809321|ref|ZP_03251658.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814147|ref|ZP_03255476.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820627|ref|ZP_03260947.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397991|ref|YP_002273126.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325818|ref|ZP_03441902.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           TW14588]
 gi|187771517|gb|EDU35361.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016999|gb|EDU55121.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002376|gb|EDU71362.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358909|gb|EDU77328.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364410|gb|EDU82829.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369721|gb|EDU88137.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374635|gb|EDU93051.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli
           O157:H7 str. EC869]
 gi|189378779|gb|EDU97195.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC508]
 gi|208729122|gb|EDZ78723.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735424|gb|EDZ84111.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740750|gb|EDZ88432.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159391|gb|ACI36824.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4115]
 gi|217322039|gb|EEC30463.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           TW14588]
          Length = 577

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 39  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 97

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 98  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 137

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 138 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 195

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 196 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 247

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 248 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+       ++  I   +G++G ++ VA L PV +   
Sbjct: 302 KEPESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDK 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 359 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 406

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 407 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 446

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 447 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 496

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 497 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 556

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 557 NAQIKKLGSWLAAQQITGFE 576


>gi|51244858|ref|YP_064742.1| NAD-dependent DNA ligase [Desulfotalea psychrophila LSv54]
 gi|81642639|sp|Q6API9|DNLJ_DESPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50875895|emb|CAG35735.1| related to NAD-dependent DNA ligase [Desulfotalea psychrophila
           LSv54]
          Length = 679

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 150/698 (21%), Positives = 277/698 (39%), Gaps = 101/698 (14%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
              +  Y+   P++ D  YD        +    P        +  L ++  E       V
Sbjct: 71  QAANALYRAGYPLLSDEAYDFTF--LTELRRRNPQ-------HPYLLQVEAEPVQQGKTV 121

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFTLEPKIDGTMITIRYEKGK 147
              +  LS +K +++E +R++  RI +  Q+K  D  S+ F   PK+DG      Y+ G+
Sbjct: 122 ELPMRMLSTDKAYDLESIRRWGRRIEKAAQEKGIDFTSLVFRGTPKLDGFAA---YDDGR 178

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            +Y   RGDG  G DVS        +               GE+ ++K+ F         
Sbjct: 179 RLY--TRGDGKKGTDVSRAFARGLQV-----SRGGSRGLGAGEIVVNKDYF-------TE 224

Query: 208 VGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
              + + N RN  + +++      +   +                   + ++    + FP
Sbjct: 225 HLAQFFDNSRNFQASLIKEK---TLALPVV------------------KAIEAGAAIFFP 263

Query: 268 VNNGVRQANTFHGIVSYYNEMKS-IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
            +       ++  ++  + E+   +   +PY+IDG+V+++ +  L++ +G      RW I
Sbjct: 264 FSMLPDWRGSWLELLQEFEEIVEGLWQKVPYEIDGVVFEIIDEGLREVMGATRHHHRWQI 323

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           + K   + A   +L +  Q  R G + PVA +EP  + GALI   T H+   ++      
Sbjct: 324 AFKKNTEIAEVTVLRVRPQTSRLGRVNPVAEVEPTRLSGALIQRVTAHHYAMVRD----- 378

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 R I  G R+ + R+GEVIPK+ +++   +   A     P+ CP C S +  D +
Sbjct: 379 ------RGIGPGARIRMSRSGEVIPKIEEVV---KPVAAAQLDIPAHCPSCGSDLAWDGD 429

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                      C   ++C AQ    ++HF  +   N++G G   +   ++          
Sbjct: 430 --------YLFCLNNMSCPAQITNSMEHFF-KILGNVDGFGPSSVQRLYEGG-------- 472

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN--ISLERFIFSLGIRHVGA 564
             D+  L   +     ++    GFG    TN+ + +N+ R   I   RF+ + G+  +G 
Sbjct: 473 LVDLPALYAMESADFEQV----GFGPKQATNMVEQLNRSREELIEDWRFLAAFGVHRLGM 528

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRN 621
                L +Y      F      I+A           +    +  A +I        +   
Sbjct: 529 GNCEKLLRYVRLEDVFNLSEEQIVA----------EIKGFQEKTAHSICAGLAGIKDLFF 578

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
                    E +P +    +   S I  K +VFTG +    R   ++    LGA V   +
Sbjct: 579 QLFALGFKLEPTPLLAEGGQGEKSPISGKTIVFTGAMLAASRGDMEKQAKALGATVGKSI 638

Query: 682 SRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + KTD+++ G   G +K+ KA+ LG+ I++EE +  L+
Sbjct: 639 TGKTDMLVTGQRVGATKMAKAETLGIAILSEEAYRQLV 676


>gi|191167813|ref|ZP_03029619.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B7A]
 gi|190902156|gb|EDV61899.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B7A]
          Length = 562

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTMVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|311277433|ref|YP_003939664.1| DNA ligase (NAD(+)) [Enterobacter cloacae SCF1]
 gi|308746628|gb|ADO46380.1| DNA ligase (NAD(+)) [Enterobacter cloacae SCF1]
          Length = 556

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 129/619 (20%), Positives = 232/619 (37%), Gaps = 97/619 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               +  +A +E+++L  +++   + Y++     + D  YD L  R       F     +
Sbjct: 20  CPVWAPAKAEQEMAALNAQLTRWSEAYWREGASAVSDEVYDQLSARLKQWQRCFSQERTA 79

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           E+       IGG        V H +    + K+ +   L +++      W          
Sbjct: 80  EEAPA----IGGA-------VKHPVAHTGVRKMASKAALEQWMRTRQGLW---------- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y +G+ V A  RGDG  GED +A  R I  IP+     +     ++
Sbjct: 119 -VQPKVDGVAVTLVYRQGRLVRAISRGDGLKGEDWTAKARVIAAIPQQTQGPL-ANSVLQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE++  +++ +          R    N R  A+G + R +  D   +L  F+       +
Sbjct: 177 GEIFWRQDNHIQQ--------RMGGMNARAKAAGAMMRQSDGDALAHLGLFIWEWPDGPQ 228

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L  +   GF +        NT   +        S  + LP+  DG++ +  
Sbjct: 229 TMP----ERLAALAAAGFRLTADWTLPVNTIGDVEQRRAAWFS--APLPFATDGIIIRAA 282

Query: 308 EFSLQKQL--GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +    ++   GE      W+++ K+A      ++  I   +GRTG +  +A LEPV +  
Sbjct: 283 QEPAGERWLPGEGG----WVVAWKYAPASQVAQVKTIRFAVGRTGKVAVIAALEPVVLDD 338

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +   +L +    + L           DI  GD++LV  AG+ IP+V  ++   R  D 
Sbjct: 339 KRVQRVSLGSVARWRAL-----------DIAPGDQILVSLAGQGIPRVDGVVW--RGVDR 385

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           Q                   +P   +  A         C AQ + RL    SR A +IEG
Sbjct: 386 QK-----------------PSPPVPRYNALTCLYASPECMAQFIARLVWLSSRQALDIEG 428

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G       +++               L    Q +  +++   G        L+   N  
Sbjct: 429 VGNAGWQILYQAHH----------FEHLFSWLQLTPAQLQATPGLSPARGLTLWHRFNLA 478

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     R+I ++G        A   A    S+Q   Q        +  DW +   +P +G
Sbjct: 479 REQPFIRWIVAMGAPL---AQAALKAAGDRSWQAMRQ-------RSEADWRT---LPGMG 525

Query: 606 DIIAQAIVEFYQNPRNICA 624
           +  A+ IV +  +P+    
Sbjct: 526 EEKARQIVSWLHHPQVEAL 544


>gi|315296990|gb|EFU56270.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 16-3]
          Length = 561

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 180 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    N        LP+  DG+V +  
Sbjct: 232 LM----TDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKT--KLPFVTDGVVVRAA 285

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRALHQTHR-------FEHIFS---WLLLTPEQLQNTPGSAKSKSAQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++  LS + F Q++       A    +W  
Sbjct: 481 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQLPGTGSGRARQVIEWKE 540

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 541 NAQIKKLGSWLAAQQITGFE 560


>gi|260857958|ref|YP_003231849.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|260870377|ref|YP_003236779.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
 gi|257756607|dbj|BAI28109.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|257766733|dbj|BAI38228.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
          Length = 560

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|331659983|ref|ZP_08360921.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA206]
 gi|331053198|gb|EGI25231.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA206]
          Length = 560

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 231/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 179 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    N        LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKT--KLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGSAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++  LS + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|191170589|ref|ZP_03032142.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli F11]
 gi|190909397|gb|EDV68983.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli F11]
          Length = 562

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F +  R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PL             V H +    + K+ +   LR ++      W          
Sbjct: 83  DAMMPPLA----------GTVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 181 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 286

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|110643888|ref|YP_671618.1| NAD-dependent DNA ligase LigB [Escherichia coli 536]
 gi|300983472|ref|ZP_07176619.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 200-1]
 gi|110345480|gb|ABG71717.1| hypothetical DNA ligase-like protein YicF [Escherichia coli 536]
 gi|300306936|gb|EFJ61456.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 200-1]
 gi|324012718|gb|EGB81937.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 60-1]
          Length = 561

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F +  R 
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPR- 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PL             V H +    + K+ +   LR ++      W          
Sbjct: 82  DAMMPPLA----------GTVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 180 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 232 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 285

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 481 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 540

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 541 NAQIKKLGSWLAAQQITGFE 560


>gi|166226371|sp|Q0TBG2|LIGB_ECOL5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PL             V H +    + K+ +   LR ++      W          
Sbjct: 81  DAMMPPLA----------GTVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|12518406|gb|AAG58791.1|AE005592_2 putative enzyme [Escherichia coli O157:H7 str. EDL933]
          Length = 562

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRXA 286

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+       ++  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|161367494|ref|NP_290227.2| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EDL933]
          Length = 560

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRXA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+       ++  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|13363997|dbj|BAB37945.1| putative enzyme [Escherichia coli O157:H7 str. Sakai]
 gi|209754570|gb|ACI75592.1| putative enzyme [Escherichia coli]
 gi|209754572|gb|ACI75593.1| putative enzyme [Escherichia coli]
 gi|209754576|gb|ACI75595.1| putative enzyme [Escherichia coli]
          Length = 562

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+       ++  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|38704188|ref|NP_312549.2| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. Sakai]
 gi|195936208|ref|ZP_03081590.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4024]
 gi|254795602|ref|YP_003080439.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224170|ref|ZP_05938451.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254780|ref|ZP_05947313.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|166226377|sp|Q8XD89|LIGB_ECO57 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|257096607|sp|B5YWE6|LIGB_ECO5E RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|254595002|gb|ACT74363.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           TW14359]
 gi|320639554|gb|EFX09162.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. G5101]
 gi|326337353|gb|EGD61188.1| DNA ligase , LigB [Escherichia coli O157:H7 str. 1044]
          Length = 560

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 230/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+       ++  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|166788183|emb|CAP40308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma solani]
          Length = 333

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 123/340 (36%), Positives = 187/340 (55%), Gaps = 12/340 (3%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A K++ SL + ++  +  YY  S P I D +YDAL +    +   +P       P  P  
Sbjct: 5   AIKKIKSLVKLLNEANYQYYNLSNPKINDQQYDALLKELIILETNYPQ---HRLPYSPTL 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           KIGG +        H+IP +SL+  +NIE+L+ F  RI +      + S     E KIDG
Sbjct: 62  KIGGFVEKKFKNFHHTIPMMSLDNAFNIEELKNFYDRIVKI-----NPSFSLLTELKIDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I ++Y+KG    A  RG+G  GED++  ++ I T+P  L L+ P  IEVRGE+Y+S  
Sbjct: 117 VAINLKYKKGILTQALTRGNGILGEDITKNVQTIKTVP--LKLSQPIDIEVRGEIYLSYP 174

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            F  LN +     + P+ANPRNAASG LR+LN   +  R L+ F++ +  +  +    Q 
Sbjct: 175 AFEKLNQKQKENNKTPFANPRNAASGTLRQLNSKIVAQRNLSIFIYNIA-SPYLIKPTQL 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L+ +  LGF VN     A TF  ++      K I+ T PYD DG+V KV+E +L   +
Sbjct: 234 ASLEFLIQLGFTVNPHYNLALTFEDLLVKIQNYKVIKDTQPYDTDGVVIKVNELALHALI 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           G  +++P+W I++KF  K + + + DI  Q+GRTG++TP+
Sbjct: 294 GATSKAPKWAIAYKFPAKTSQSIVTDIIFQLGRTGMITPI 333


>gi|74314119|ref|YP_312538.1| NAD-dependent DNA ligase LigB [Shigella sonnei Ss046]
 gi|73857596|gb|AAZ90303.1| putative enzyme [Shigella sonnei Ss046]
          Length = 562

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 228/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF       R       I    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKELATAGFTLTQRYTRAVKNADEIARVRNEWWK--AKLPFVTDGVVVRAA 286

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q +       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQRLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|332750605|gb|EGJ81013.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri 4343-70]
          Length = 556

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 18  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 76

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 77  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 116

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 117 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 175 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 226

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 227 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 280

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 281 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 337

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 338 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 385

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +            C  Q + RL    S+    ++
Sbjct: 386 --------------------PTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLD 425

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 426 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 475

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            RN    R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 476 ARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 535

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 536 NAQIKKLGSWLAAQQITGFE 555


>gi|110807676|ref|YP_691196.1| NAD-dependent DNA ligase LigB [Shigella flexneri 5 str. 8401]
 gi|110617224|gb|ABF05891.1| putative enzyme [Shigella flexneri 5 str. 8401]
          Length = 562

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +            C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            RN    R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|166226369|sp|Q0SYH4|LIGB_SHIF8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  346 bits (887), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +            C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            RN    R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|166226367|sp|Q3YW09|LIGB_SHISS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  346 bits (887), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 228/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF       R       I    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQRYTRAVKNADEIARVRNEWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q +       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQRLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|188492181|ref|ZP_02999451.1| putative DNA ligase domain protein [Escherichia coli 53638]
 gi|188487380|gb|EDU62483.1| putative DNA ligase domain protein [Escherichia coli 53638]
          Length = 562

 Score =  346 bits (887), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQQVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQTHR-------FEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|209754568|gb|ACI75591.1| putative enzyme [Escherichia coli]
 gi|209754574|gb|ACI75594.1| putative enzyme [Escherichia coli]
          Length = 562

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|291285018|ref|YP_003501836.1| DNA ligase B [Escherichia coli O55:H7 str. CB9615]
 gi|290764891|gb|ADD58852.1| DNA ligase B [Escherichia coli O55:H7 str. CB9615]
 gi|320644993|gb|EFX14023.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H- str.
           493-89]
 gi|320650260|gb|EFX18749.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H- str. H
           2687]
 gi|320655612|gb|EFX23540.1| NAD-dependent DNA ligase LigB [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661346|gb|EFX28770.1| NAD-dependent DNA ligase LigB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666360|gb|EFX33359.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 560

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHRFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|306816005|ref|ZP_07450143.1| NAD-dependent DNA ligase LigB [Escherichia coli NC101]
 gi|305850401|gb|EFM50858.1| NAD-dependent DNA ligase LigB [Escherichia coli NC101]
          Length = 560

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PL             V H +    + K+ +   LR ++      W          
Sbjct: 81  DVMMPPLA----------GTVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLKRKGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+ +   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKDLATAGFTLTQTYTRAVKNTDEVAHVRNEWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|323939593|gb|EGB35799.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli E482]
          Length = 562

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 118/620 (19%), Positives = 229/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N     +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINAHAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 286

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P      +         C  Q + RL    ++    ++
Sbjct: 392 --------------------PTPPENSFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|215488942|ref|YP_002331373.1| NAD-dependent DNA ligase LigB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|254809143|sp|B7UM69|LIGB_ECO27 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|215267014|emb|CAS11459.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 561

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 117/620 (18%), Positives = 230/620 (37%), Gaps = 92/620 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHR 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DAMMPPLN----------GAVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   + ++ R + +D    L  FV       +
Sbjct: 180 GEIFLKREGHIQQ--------QMGGINARAKVADLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    N        LP+  DG+V +  
Sbjct: 232 LM----TDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKT--KLPFVTDGVVVRAA 285

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 286 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             +I  GD++LV  AG+ IP++ D++    ER   
Sbjct: 343 KVQRVNIGSVRRWQ-----------EWNIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 391 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 430

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 431 GIGEAGWRSLHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 480

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNIIAHNND---DWLS 597
            R     R++ ++GI      + A   RS ++  LS + F Q++    +       +W  
Sbjct: 481 ARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQLPGTGSGRVRQVIEWKE 540

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 541 NAQIKKLGSWLAAQQITGFE 560


>gi|301018976|ref|ZP_07183199.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 69-1]
 gi|300399470|gb|EFJ83008.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 69-1]
          Length = 561

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 118/619 (19%), Positives = 229/619 (36%), Gaps = 91/619 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGIYDQLSARLTQWQRCFGNETR- 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DVMMPPLN----------GAVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+  S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTASGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLKREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    N      + LP+  DG+V +  
Sbjct: 232 LM----TDRLKELTTAGFTLTQTYTRAVKNADEVARVRNAWWK--AKLPFVTDGVVVRAA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +          W+++ K+        +  I   +G++G ++ VA L PV +    
Sbjct: 286 KEPESRYW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
           +    + +    +             DI  GD++LV  AG+ IP++ D++    ER    
Sbjct: 344 VQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK-- 390

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                                P   +  +         C  Q + RL    S+    ++G
Sbjct: 391 -------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDG 431

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G+       ++            IF+       +  +++N  G        L+   N  
Sbjct: 432 IGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNLA 481

Query: 546 RNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLSL 598
           R     R++ ++GI      + A   RS ++  LS + F Q++       A    +W   
Sbjct: 482 RKQPFTRWVMAMGIPLTRVALNASDERSWSQLLLSTEQFWQQLPGTGSGRARQVIEWKEN 541

Query: 599 IRVPLVGDIIAQAIVEFYQ 617
            ++  +G  +A   +  ++
Sbjct: 542 AQIKKLGSWLAAQQITGFE 560


>gi|312963566|ref|ZP_07778047.1| DNA ligase B [Pseudomonas fluorescens WH6]
 gi|311282075|gb|EFQ60675.1| DNA ligase B [Pseudomonas fluorescens WH6]
          Length = 553

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 128/626 (20%), Positives = 241/626 (38%), Gaps = 98/626 (15%)

Query: 6   LIPIEALS---IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
            +P+ +L+    E AR ++  L +++   DD Y++  +  + D  YD  ++R        
Sbjct: 11  AVPLWSLAQNCPEDARTQIHELAEQVRLWDDSYHRLGQSPVSDELYDQARQRLADWRPC- 69

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                      P    G  +  S   + H +    LEK+ + + +  ++      W    
Sbjct: 70  --------AAQPATVPGNPLTTSRGTLPHPVAHTGLEKLRDEQAVGTWLDTHKEVW---- 117

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
                  ++PK+DG  +T+ Y +G+      RGDG  G+D SA  R IP I + L    P
Sbjct: 118 -------IQPKVDGVAVTLMYRQGRLSRVISRGDGTLGQDWSASARKIPGIVQQLPE--P 168

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVH 241
             + ++GE+Y   +  +               N R+  +G++ R   +D     +  FV 
Sbjct: 169 LDLVLQGELYWRLHAHVQ--------SASGGLNARSKVAGLMNRRQLSDTDAAGIGLFVW 220

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDID 300
              +       G  E L  +  LGF  +    Q        + +     +    LP+  D
Sbjct: 221 AWPEG----PTGFTERLATLARLGFVDSQRYSQPVQDLTDAMHWRAYWYN--HPLPFASD 274

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V    + +  ++   +A +P W ++ K+   +A   +  +  ++GRTG +TP+  L+P
Sbjct: 275 GVVLHQAQHAPAQRW--QANAPYWAVAWKYPATKALALVRKVHFKVGRTGRITPILELQP 332

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V++    I+  +  +    + L           DIR GD+V +  AG+VIP++ ++I+  
Sbjct: 333 VHLDDRQISRVSAGSLKRWQAL-----------DIRPGDQVSISLAGQVIPRLDEVILR- 380

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
                             +  V    P      A         C  Q L RL        
Sbjct: 381 -----------------NATRVDLPVPDPRNFHALSCWQLDPGCEEQLLARLSWLSGNQG 423

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
             +  +G++  +   ++   A  +    D  TL   +        NI G GD+S   + D
Sbjct: 424 LALPHMGRETWNVLIQAGLIAGFL----DWLTLDAAELA------NIDGLGDLSRARVLD 473

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           SI   R     +++ +LG+       AR+         N   +   +IA +   W +   
Sbjct: 474 SIRSARQRPFAQWLKALGVP----PAARN---------NLEGDWQTLIARDTQAWQA--- 517

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVE 626
           +  +G   A  +  F+++P+     E
Sbjct: 518 IDGIGPGRAAQLSAFFRDPQIQALAE 543


>gi|331665272|ref|ZP_08366173.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA143]
 gi|331057782|gb|EGI29768.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA143]
          Length = 560

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 232/620 (37%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWLPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLKREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    N      + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWK--AKLPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            R     R++ ++GI      + A   RS ++  LS + F Q++       A    +W  
Sbjct: 480 ARKQPFTRWVMAMGIPLTRVALNASDERSWSQLLLSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|324111541|gb|EGC05522.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia fergusonii B253]
          Length = 561

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 113/621 (18%), Positives = 224/621 (36%), Gaps = 97/621 (15%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   Q +        +A +E+S L+ ++    D Y++  K  + D  YD L  R      
Sbjct: 15  MSSAQAV-CPDWPPARANEEISRLQLQLKQWSDTYWKEGKSKVEDHVYDQLSARLAQWQR 73

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            F D A SE    P++            V H +    + K+ +   L++++      W  
Sbjct: 74  CFGDNADSETMMPPIS----------GTVMHPVAHTGVRKLADKNALQQWMRARRDVW-- 121

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                    ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R IP++P+ +S  
Sbjct: 122 ---------VQPKVDGVAVTLVYRDGKLNQAISRGNGLKGEDWTQRLRLIPSVPQNVSGP 172

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240
           +     ++GE+Y+ +   +          +    N R+  +G++ R   TD    L  F+
Sbjct: 173 LSNST-LQGEIYLQREGHIQQ--------QMGGMNARSKVAGMMMRHGNTDTLNSLGVFI 223

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
                  +       E LQ +   GF       R+ N+   +    +E       LP+  
Sbjct: 224 WAWPDGPQSMP----ERLQILTAAGFILTQQYTREVNSAREVEQVRSEWWKT--KLPFVT 277

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V +V +    +    +     W+ + K+        +  I   +G++G +  VA L 
Sbjct: 278 DGVVVRVGKEPDSRHW--QPGQGDWLAAWKYPPIAQVAEVNAIHFTVGKSGKIAVVASLA 335

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           P+ +    +    + +    +             DI  GD++LV  AG+ IP++ +++  
Sbjct: 336 PIKLDDKRVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDNVVWR 384

Query: 420 --ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
             ER                         P   +  +         C  Q + RL    S
Sbjct: 385 GTERTK---------------------PTPPENRFNSLTCYFASDVCREQFISRLVWLGS 423

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           +    ++G+G+       ++            IF+       +  +I++  G        
Sbjct: 424 KQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLLLTPEQIQSTPGIAKSKSEQ 473

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L    +  +     R++ ++GI       A   +  + S+Q    +              
Sbjct: 474 LRHQFHLAKKQPFTRWLMAMGIPL---TQAALKSHPFDSWQQVMSQTK----------QE 520

Query: 598 LIRVPLVGDIIAQAIVEFYQN 618
             ++P  G   A  ++++  +
Sbjct: 521 WQQLPGTGSRRASQVIKWRDD 541


>gi|148550043|ref|YP_001270145.1| NAD-dependent DNA ligase LigB [Pseudomonas putida F1]
 gi|257096559|sp|A5WA01|LIGB_PSEP1 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|148514101|gb|ABQ80961.1| DNA ligase (NAD(+)) [Pseudomonas putida F1]
          Length = 566

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 245/638 (38%), Gaps = 95/638 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S +QA+ E++ L   ++  D+ Y++    ++ D  YD  + R + +   F   A  
Sbjct: 23  CPQWSPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSRERLNHLQQCF---AVG 79

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+         +  +   V H +P   ++K+ + + + +++      W          
Sbjct: 80  TSPS--------PLASARGPVPHPVPHTGVDKLADRQAVARWMAGKSGVW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +++ Y++G+ V    RGDG +G D S  I  +  + R L   +   + ++
Sbjct: 122 -VQPKVDGVAVSLTYQQGRLVQLTSRGDGVNGHDWSRHIPQLDAVTRQLPEAL--DLHLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GE+Y+  +D +          +   AN R   +G+L R   T      +  FV G     
Sbjct: 179 GELYLRLSDHVQ--------AKAGSANARGTVAGLLARKQLTGAQGNAIGLFVWGWPHGP 230

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q E L ++  LGFP +     A       +++ E    RS LP+  DG++ +  
Sbjct: 231 EQ----QAERLAQLARLGFPDSQLYSIAIDTLEDAAHWREH-WYRSALPFATDGVILRQS 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                ++   +A++P W+ + K+   QA   + D+  ++GRTG +TPV  L PV +    
Sbjct: 286 SRPPAERW--QAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHLLPVTLDDRR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           IT  +L +      L           DIR GD+V +  AG  IP++  ++   R  + Q 
Sbjct: 344 ITQVSLGSLARWHTL-----------DIRPGDQVAISLAGLTIPRLEQVV--HRTVERQA 390

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            + P                   +  A         C  Q + RL     +    +   G
Sbjct: 391 VAAP----------------APDRYHAHSCWQASEGCDEQFIARLTWLGGKQGLALPRTG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                   +    A  +    D   L         +++   G   ++  +L  S ++ R+
Sbjct: 435 PGTWRRLVE----AGLVTSMTDWLQLDA------ERLQQAPGISRLTAAHLLGSFDEARS 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              ++++ +LG+          + K+         +   + + +   W +   VP +G  
Sbjct: 485 RPFDQWLRALGVP---------IGKHLP----LTGDWQALASRSAGHWQT---VPGIGAK 528

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
            ++ +VEF+           L +          + +  
Sbjct: 529 RSRQLVEFFAASEVQAIAAQLAETGIEGFRPPPQRIEQ 566


>gi|313500944|gb|ADR62310.1| LigB [Pseudomonas putida BIRD-1]
          Length = 566

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 250/638 (39%), Gaps = 95/638 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               + +QA  E++ L   ++  D+ Y++    ++ D  YD  + R + +   F   A  
Sbjct: 23  CPHWNPQQAEAEVAQLRATLARWDEHYHRQGIALVADELYDQSRERLNHLQQCF---AVG 79

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+         +  +   V H +P   ++K+ + + + +++      W          
Sbjct: 80  TSPS--------PLASARGPVPHPVPHTGVDKLADRQAVARWMAGKTGVW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +++ Y++G+ V    RGDG  G D S  ++ +  + R L   +   + ++
Sbjct: 122 -VQPKVDGVAVSLTYQQGRLVQLTSRGDGVHGHDWSRHVKQLGAVTRQLPEAV--DLHLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+Y+  ND +          +   AN R   +G+L R   T +    +  FV G     
Sbjct: 179 GELYLRLNDHVQ--------AKAGSANARGTVAGLLARKQLTGEQGNAIGLFVWGWPHGP 230

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q E L ++  LGFP +     A       +++ E    RS LP+  DG++ +  
Sbjct: 231 EQ----QAERLAQLARLGFPDSQLYSIAIDTLEDAAHWREH-WYRSALPFATDGVILRQG 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                ++   +A++P W+ + K+   QA   + D+  ++GRTG +TPV  ++PV +    
Sbjct: 286 SRPPAERW--QAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           IT  +L +    + L           DIR GD+V +  AG  IP++  ++   R  + QP
Sbjct: 344 ITQVSLGSLARWQRL-----------DIRPGDQVAISLAGLTIPRLEHVV--HRAVERQP 390

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            + P+              P      +  R      C  Q + RL     +    +   G
Sbjct: 391 ITAPA--------------PDQHHAHSCWR--ASEGCDEQFIARLTWLGGKQGLALPRTG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                   +    A  +    D   L         +++   G   ++  +L  S ++ R+
Sbjct: 435 PGTWRRLVE----AGLVTSMTDWLQLDA------ERLQQAPGISRLTAAHLMGSFDEARS 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             +++++ +LG+          + K+         +   + + N + W +   VP +G  
Sbjct: 485 RPVDQWLRALGVP---------IGKHLP----LTGDWQALASRNAEQWQT---VPGIGAK 528

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
            +  +VEF+           L            + +  
Sbjct: 529 RSHQLVEFFAASEVQAIAAQLADAGIEGFRTPPQRIEQ 566


>gi|307128799|ref|YP_003880815.1| DNA ligase [Dickeya dadantii 3937]
 gi|306526328|gb|ADM96258.1| DNA ligase [Dickeya dadantii 3937]
          Length = 561

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 123/628 (19%), Positives = 234/628 (37%), Gaps = 89/628 (14%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +     A S  +A +E++ L Q+++  D+ YY+  +  + D  YD L++        F  
Sbjct: 20  EAASCPAWSSTRAEQEITQLGQQLTQWDNAYYEQGQSPVDDQVYDQLRQTLATWQVCFQA 79

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
            A     + P             +  H +    L+K+    +L+++I +    W      
Sbjct: 80  DAGRFAISLPTT----------GRRQHPVAHTGLKKLSEPTELKQWIAQHNDLW------ 123

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PKIDG  +T+ YE+GK V A  RG+G  GED +  +R + ++P+ LS  +   
Sbjct: 124 -----VQPKIDGVAVTLVYEQGKLVAAISRGNGRQGEDWTDKVRQMNSVPQQLS-AMSGR 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
              +GE+Y+   D          VG     N R   +G +RR  P+ +   +  FV    
Sbjct: 178 QVFQGELYLQVTDH-----RQQQVGG---INARAQVAGEMRRKQPSPLLSRIGVFVWAWP 229

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                        L K+R LGF +     Q  +     + + E +  R+ LP+  DG+V 
Sbjct: 230 DGPADMP----ARLAKLRELGFGLTADYTQPVSSLEAAAQWRE-RWYRAPLPFVTDGVVV 284

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           +  +    +   +      W ++ K+      T +  +D+++GRTG +T V +L+PV + 
Sbjct: 285 RQAQEPAGRYWQDTP--AEWAVAWKYPLVNRVTEVTGVDVEVGRTGRMTVVLQLQPVILD 342

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              ++   L +    +             D+  GDRV +  AG  IP++  ++   R   
Sbjct: 343 DKTVSRVNLGSVSRWR-----------QWDVLPGDRVSISLAGLGIPRLDAVVW--RGAV 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +  + P+  P     V   L                  C  Q L RL     R+  ++ 
Sbjct: 390 REAITVPATSPF---DVFSCLQW-------------SRECQPQFLARLVWMSGRNGLSLS 433

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+ +       +       +        L+  Q  +         FG+     ++     
Sbjct: 434 GISEATWQRLTQRGALVDVVS----WLALEPAQLAAAGD------FGEQQAERIHRQFQL 483

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R   L  ++ +LG+            ++ L        +  +   +  +W        +
Sbjct: 484 ARRQPLRNWLLALGLPVPSRV------RHALD----GASLEQLQQRSAAEWQQFS---GI 530

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEV 632
           G   AQ I +F  +   +  +  L +  
Sbjct: 531 GVRRAQRIRDFLHHTDIVRQLAWLNEHG 558


>gi|26991646|ref|NP_747071.1| NAD-dependent DNA ligase LigB [Pseudomonas putida KT2440]
 gi|81439525|sp|Q88D59|LIGB_PSEPK RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|24986741|gb|AAN70535.1|AE016695_9 DNA ligase, NAD-dependent, putative [Pseudomonas putida KT2440]
          Length = 566

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 245/638 (38%), Gaps = 95/638 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               + +QA+ E++ L   ++  D+ Y++    ++ D  YD    R + +   F   A  
Sbjct: 23  CPHWNPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSHERLNHLQQCF---AVG 79

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+         +  +   V H +P   ++K+ + + + +++T     W          
Sbjct: 80  TSPS--------PLASARGPVPHPVPHTGVDKLADRQAVARWMTGKTGVW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +++ Y++G+ V    RGDG  G D S  I  +  + R L   +   + ++
Sbjct: 122 -VQPKVDGVAVSLTYQQGRLVQLTSRGDGVHGHDWSRHIPQLGAVTRQLPEAV--DLHLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GE+Y+  ++ +          +   AN R   +G+L R   T      +  FV G     
Sbjct: 179 GELYLRLDEHVQ--------AKAGSANARGTVAGLLARKQLTGAQGNAIGLFVWGWPHGP 230

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q E L ++  LGFP +     A       +++ E    RS LP+  DG++ +  
Sbjct: 231 EQ----QAERLAQLARLGFPDSQLYSIAIDTLEDAAHWREH-WYRSALPFATDGVILRQG 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                ++   +A++P W+ + K+   QA   + D+  ++GRTG +TPV  ++PV +    
Sbjct: 286 SRPPAERW--QAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           IT  +L +    + L           DIR GD+V +  AG  IP++  ++   R  + QP
Sbjct: 344 ITQVSLGSLARWQRL-----------DIRPGDQVAISLAGLTIPRLEHVV--HRAVERQP 390

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            + P                   +  A         C  Q + RL     +    +   G
Sbjct: 391 ITAP----------------APDQHHAHSCWQASEGCDEQFIARLTWLGGKQGLALPRTG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                   +    A  +    D   L         +++   G   ++ T +  S ++ R+
Sbjct: 435 PGTWRRLVE----AGLVTSMTDWLQLDA------ERLQQAPGISRLTATQMLGSFDQARS 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              ++++ +LG+          + K+     N+        A  +        VP +G  
Sbjct: 485 RPFDQWLRALGVP---------IGKHLPLTGNWQ-------ALASRSAGQWQTVPGIGAK 528

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
            ++ +VEF+           L +          + +  
Sbjct: 529 RSRQLVEFFAASEVQAIAAQLAEAGIEGFRTPPQRIEQ 566


>gi|237728943|ref|ZP_04559424.1| NAD-dependent DNA ligase LigB [Citrobacter sp. 30_2]
 gi|226909565|gb|EEH95483.1| NAD-dependent DNA ligase LigB [Citrobacter sp. 30_2]
          Length = 559

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 114/617 (18%), Positives = 231/617 (37%), Gaps = 94/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A +E+S L+Q+I+  +D Y++  +  + D  YD L  +       F D A  
Sbjct: 22  CPVWSPARANEEISRLQQQITQWNDSYWKQGESAVDDGVYDQLNAQLIQWQRCFGDEAPP 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    P++            V+H +P   + K+ + + L +++      W          
Sbjct: 82  DLSVPPIS----------GTVSHPVPHTGVRKLADKQALHQWMHARSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y KG  V A  RG+G  GED +  +  IP++P      +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRKGNLVRAISRGNGLKGEDWTQKVLQIPSVPHSTKGKLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          ++   N R+  +G++ R   T++ R L  F+        
Sbjct: 180 GEIFLQQEGHIQ--------KQRGGMNARSKVAGLMMRQGNTEMLRSLAIFIWAWPDGPA 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      E L+++   GF       QA      +        S  S LP+  DG+V +  
Sbjct: 232 VMP----ERLEQLTAAGFSYTQRYTQAVKNADDVEKSRARWWS--SALPFVTDGVVVRTA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +          W+ + K+      + +  I   +G++G +  VA L PV +    
Sbjct: 286 KEPRAQYW--LPGQGDWLAAWKYPPVTRVSEVTGIQFSVGKSGKIAVVALLTPVMLDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +                  DI  GD++LV  AG+ IP++ +++        +P
Sbjct: 344 VQRVNIGSVRRWN-----------EWDIAPGDQILVSLAGQGIPRIDEVVWRS-TQRTKP 391

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                              P  G+  +         C  Q + RL     ++   +EG+G
Sbjct: 392 I------------------PPEGRFNSLTCFYATAECQEQFVARLVWLGGKEVLGLEGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       +       +     IF+         T+ +     G +    L+   N  R+
Sbjct: 434 EAGWRELNQ-------VYRFEHIFSW-----LGLTQEQLESALGVIKGEKLWHQFNLSRD 481

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +   R++ ++GI       A   A    S+Q   +           D  S  ++P +G+ 
Sbjct: 482 LPFTRWVIAMGIPL---TQATLNASRDGSWQQLKER----------DEQSWRQLPFMGER 528

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++++ ++      
Sbjct: 529 RARQVIQWLEDREVTAL 545


>gi|307543787|ref|YP_003896266.1| NAD-dependent DNA ligase LigB [Halomonas elongata DSM 2581]
 gi|307215811|emb|CBV41081.1| NAD-dependent DNA ligase LigB [Halomonas elongata DSM 2581]
          Length = 561

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 134/621 (21%), Positives = 235/621 (37%), Gaps = 95/621 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S   A +EL++L   +   +  Y +     + D  YD  + R +A    FPD++  
Sbjct: 21  CPDWSKGHAERELAALHDRLDAWERAYRRNGSSPVSDDIYDQAQARFEAWQDCFPDISVD 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P         +      +++H +P   L K+ ++ +   ++ R    W          
Sbjct: 81  PAPTL-------DPPDG--ELSHPVPQSGLAKLDDVVEAGAWLARRDDVW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            L+PK+DG  +T+ YE+G+   A  RGDG SG+D +A  R IP +P  L     + + +R
Sbjct: 122 -LQPKVDGVAVTLVYEQGELSQAISRGDGLSGQDWTAKARFIPDVPDRLPTQ--QRLVLR 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+Y+  +  +    E  A G       R+  +G L R +      R +  FV       
Sbjct: 179 GELYLKLDGHVQ--AERGAAG------ARSVVAGWLARDSLDGAKARQIGLFVWDWPDGP 230

Query: 248 EIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           +       E L ++  LGFP   +    A +   ++S  ++    R+ LP+  DG+V K 
Sbjct: 231 KALP----ERLARLAELGFPDTTDWTLPAESLEAVLSQRDDW--YRTPLPFATDGVVLKQ 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            +    +        P W  + K+  +    R+  ++ ++GRTG +TP+  L P  + G 
Sbjct: 285 GQRPGGEA--RTEAPPDWAAAWKYPPRSVLARVRGVEFRVGRTGRITPLLHLVPETLAGR 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I   T+ +    + L           DIR GD V +  AG+ IP++  +    R  +  
Sbjct: 343 SIRRVTVGSLGRWQTL-----------DIRPGDVVTISLAGQTIPRLDSVAW--RAAERP 389

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P   P      +   +P  G             C  Q LERL      +A ++ G+
Sbjct: 390 EVEPP---PASDYNALSCWHPSPG-------------CKGQFLERLAWLGGPEALDLAGV 433

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G        +    A  ++   D  +L      + +      G G+V    L +     R
Sbjct: 434 GAGTWRSLVE----AGLVKDLLDWMSLSAETLQAAS------GIGEVRGRQLVEVFATAR 483

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
               + ++ +LG                      A E        + D      +P VG+
Sbjct: 484 QRPFDAWLEALGAPS----------------GALADEATEWSTLASRDLEQWRALPEVGE 527

Query: 607 IIAQAIVEFYQNPRNICAVEA 627
             A+A+ +F+ N       E 
Sbjct: 528 TRAEALHDFFANAEVRGLAER 548


>gi|293393631|ref|ZP_06637941.1| NAD-dependent DNA ligase adenylation domain protein [Serratia
           odorifera DSM 4582]
 gi|291423966|gb|EFE97185.1| NAD-dependent DNA ligase adenylation domain protein [Serratia
           odorifera DSM 4582]
          Length = 566

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 124/620 (20%), Positives = 227/620 (36%), Gaps = 94/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A   E+   E+++LEQ+++  D  YYQ  + +I D  YD+L+++              
Sbjct: 26  CPAWRQERLSLEMTALEQQLTRWDVAYYQQGQGLIDDELYDSLRQKLRLWQSC---AGSG 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    P   +G        K  H +    L K+ + + + +++      W          
Sbjct: 83  DGDALPALPVG--------KTPHPVAHTGLRKLADRQAVVQWMRGRDALW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y++G  + A  RGDG  GED    +++IP +P  L  + PE + ++
Sbjct: 125 -VQPKVDGVAVTLVYQRGTLIGAISRGDGKQGEDWLEKVKSIPAVPSSLP-DAPERVVLQ 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++   D      +    G     N R+  +G L R  P+ +   +  FV G      
Sbjct: 183 GELFLIMTDH-----QQNLTGG---VNARSRVAGALLRQRPSPLLAQIGLFVWGWPDG-- 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L+++  LGFP+     R  N   G+  + +      + LP+  DG+V   D
Sbjct: 233 --PATMAERLRQLATLGFPLAQAYTRSVNDVDGVEHWRSHWHQ--NPLPFVTDGVVIHQD 288

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                +    R +   W ++ K+   Q   R+  +  +IGRTG +  V  L+P+ +    
Sbjct: 289 SPPQGRYW--RNKPAEWAVAWKYPAVQQVARVNKVIFRIGRTGKIAVVLALDPIRLDDKW 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    + L+A             GD V +   G  IP + D++   R  + QP
Sbjct: 347 VRRVNVGSLPLWQQLNAL-----------PGDHVAISLQGHGIPYLRDVVW--RAVERQP 393

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            + P                   +  A         C  Q + RL         N+ G+ 
Sbjct: 394 LTVPD----------------ANRYHALSCFELQPGCRQQLIARLVWLSGAQGLNLRGVN 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       +       ++   D  TL  +Q  +      + G G     ++Y      R 
Sbjct: 438 EASWQALIEQS----LVKNLVDWLTLTPQQLMA------VPGIGHKRAQDIYQQFRLARQ 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ +LG                 S     +     +      W        +G  
Sbjct: 488 RPFARWLIALGAPLT------------PSQSLGVEHWVPALQQTTQAWQKNA---GIGAK 532

Query: 608 IAQAIVEFYQNPRNICAVEA 627
            A  I  F+Q+P      +A
Sbjct: 533 RANNIRAFFQHPSVRQLADA 552


>gi|146309759|ref|YP_001174833.1| NAD-dependent DNA ligase LigB [Enterobacter sp. 638]
 gi|257096556|sp|A4W502|LIGB_ENT38 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|145316635|gb|ABP58782.1| DNA ligase (NAD(+)) [Enterobacter sp. 638]
          Length = 556

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 126/612 (20%), Positives = 231/612 (37%), Gaps = 91/612 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A +E++ L  +IS  +D Y+Q  K  + D  YD L  R       F     +
Sbjct: 20  CPAWSHAKAEQEIAGLNAQISRWNDAYWQEGKSDVSDEIYDQLNTRLKQWQQCFNHEPAT 79

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           ED           +  +   + H      + K+   E+LR+++      W          
Sbjct: 80  ED-----------IPPANGTLRHPFAHTGVHKVSGKEELRQWMHSRRDLW---------- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y KGK V A  RGDG  GED +A ++AIP++P  +   +     ++
Sbjct: 119 -VQPKVDGVAVTLVYRKGKLVQAISRGDGVKGEDWTARVQAIPSVPLNVK-GVLSESVLQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++     +          +    N R   +G++ R N   +   L  F+       +
Sbjct: 177 GEIFLRCERHIQQ--------QMGGMNARAKVAGMMMRQNNKTVLENLGVFIWAWPDGPQ 228

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              +   E+    +          R  +T   +     E  +  S+LP+  DG+V +   
Sbjct: 229 SMPQRLSELT---KAGFTLTAQYTRAVSTADEVEKNRKEWLT--SSLPFVTDGIVVRSSI 283

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             + +Q         W+++ K++       +  I   IGRTG ++ VA LE + +    +
Sbjct: 284 EPVGEQW--LPGEGDWVVAWKYSPVSQVAEVNAIQFAIGRTGKISVVAVLESIQLDDKRV 341

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               L +    + L           DI  GD++LV  AG+ IP+V  ++           
Sbjct: 342 KRVNLGSVSRWQAL-----------DIAPGDQILVSLAGQGIPRVDKVVWRGNDR----- 385

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                         +   P   +  +         C  Q   RL    S+   N+EGLG 
Sbjct: 386 --------------KKPAPPASQYHSLTCFYASPECLEQFFARLVWLSSKQILNMEGLGD 431

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                  ++            IF+       +  +IE   G        L+      R+ 
Sbjct: 432 SSWRLLHQTYH-------FEHIFSWLA---VTQEQIEKTSGLNPARRLQLWHRFELARHH 481

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             +++I +LGI  +    A +L+ +  S++    +          D +S  ++P +G   
Sbjct: 482 PFKKWIKALGIP-LPQAAADALSVH--SWRQLQDK----------DAVSWNQLPGIGTEK 528

Query: 609 AQAIVEFYQNPR 620
           A+ +VEF  + +
Sbjct: 529 ARKLVEFVHDSQ 540


>gi|188532209|ref|YP_001906006.1| NAD-dependent DNA ligase LigB [Erwinia tasmaniensis Et1/99]
 gi|188027251|emb|CAO95090.1| Putative NAD-dependent DNA ligase [Erwinia tasmaniensis Et1/99]
          Length = 561

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 127/619 (20%), Positives = 234/619 (37%), Gaps = 91/619 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A  E+S+L+ ++   DD YY+  +  I D +YD L  +       F      
Sbjct: 19  CPVWSASRADAEISALQAQLEKWDDAYYRRGESPIPDEQYDTLHGKLRQWQRCF------ 72

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P   L K    +  +  KV H +  + ++K+ +   L +++ R    W          
Sbjct: 73  -SPASDLRK---PLLKTDGKVLHPVSHMRVKKLPDKTALTRWMARRSGLW---------- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +++ Y  G+      RGDG  GED +   R IP IP+ +  ++  +   +
Sbjct: 119 -VQPKIDGVAVSLLYRDGQLEQMISRGDGVRGEDWTEKARLIPDIPKFIPHSM-RVQVFQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+Y+   D           G K   N R+A +G L    P  + + + FFV        
Sbjct: 177 GELYLKMTDH-----RQAINGGK---NARSAVAGALMAKAPAPLLQQIGFFVWEWPDG-- 226

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  + L + R LGFP ++    + +    + S+          LP+  DG+V    
Sbjct: 227 --PTSLAQRLTETRSLGFPDISAWTHRVDNVDEVESWRERW--FHQPLPFVTDGIVVH-- 280

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               ++          W+I+ K+A  +A+  +  ++  IGRTG +  V  L PV +G   
Sbjct: 281 SIPTRRGSDWLPEFGEWVIAWKYAPPEATAEVRSVEFAIGRTGRVNVVLNLLPVQLGDKR 340

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I+  ++ + +  K             D+  GD+V +  AG   P++  ++          
Sbjct: 341 ISRVSVGSIENWK-----------QTDVIAGDQVSISLAGLGAPRLDKVLWR-------- 381

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                  P           P   +  +         C  Q L RL+    +   N+ G G
Sbjct: 382 -VAERAYP---------PQPDAAQFNSVSCFHLTPQCRQQFLARLEWLGGKSVLNLVGTG 431

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +Q      +S            IF+       +  ++E + G G+      +      R 
Sbjct: 432 RQTWQQLIQSGSMVH-------IFSWLA---LTKEQLEAVPGIGEQRAQLFWQQFKLSRQ 481

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +  +R++ +LG+  +  +   +L     +  N+   ++  +           ++P VG  
Sbjct: 482 LPFKRWVKALGVP-IPEKALNTL-----TDDNWQPLVSRRL-------QEWQQLPGVGRK 528

Query: 608 IAQAIVEFYQNPRNICAVE 626
           +A  IV F Q       +E
Sbjct: 529 LAGKIVSFLQQREVRQLIE 547


>gi|92113642|ref|YP_573570.1| NAD-dependent DNA ligase LigB [Chromohalobacter salexigens DSM
           3043]
 gi|123387489|sp|Q1QXD7|LIGB_CHRSD RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|91796732|gb|ABE58871.1| DNA ligase (NAD+) [Chromohalobacter salexigens DSM 3043]
          Length = 629

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 129/624 (20%), Positives = 230/624 (36%), Gaps = 89/624 (14%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
              P   ++ E  + +  +L+  I+  D  YY+  + ++ D  YD+ KRR    A  FP 
Sbjct: 42  SAPPCPQMTPEAMQNDYQALDARIARWDRAYYRQGQRLVDDGTYDSAKRRLAHWAECFPL 101

Query: 65  LARSEDPNG-PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           LA+       P    G +         H +    + K+ + + +  ++ R          
Sbjct: 102 LAKPSVNTHEPT---GAK--------HHPVAQTGIAKLPDRDAVAGWVAR---------Q 141

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
                 ++PK+DG  +T+ Y  G+   A  RGDG SG+D       I  IP  L  + P 
Sbjct: 142 GDHPLWVQPKVDGVAVTLVYRHGRLAAAISRGDGVSGQDWYTKALHIAAIPSHLPADAPP 201

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHG 242
           ++ ++GE+Y  +       D             R   +G++ R   TD     +  FV  
Sbjct: 202 LVILQGELYARRTAHRQSRDGTDGA--------RARIAGLMARDTLTDREGSTIGLFVWA 253

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                +       E L+ +   GF  V        T   I ++       R  LP+  DG
Sbjct: 254 WPNGPDTMP----ERLETLAGWGFGDVAEMTHGVATAEDIAAWRQRW--YRHALPFATDG 307

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K  +         +A  P W ++ K+  ++A  R+  ++  +GRTG +  VA LEPV
Sbjct: 308 VVVKRGDRPPGSDW--QASPPDWAMAWKYPAREALARVDALEFSVGRTGRIAVVAELEPV 365

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +G   +T  +L +  + +             D+R GD+V ++ AG  IP++ +++V  R
Sbjct: 366 LLGDKRVTRVSLGSLAHWRR-----------TDVRPGDQVRLRLAGLTIPQLQEVVVRTR 414

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                               V          ++  R T   AC  Q L RL+   S +  
Sbjct: 415 PR----------------PQVDAPEADQYDRLSCLRFT--PACRDQFLARLEWLGSDEGL 456

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +  G+G    +        A  ++   D  TL       T  +E + G G  +       
Sbjct: 457 DFPGIGPATWNQLVD----AGLVKGLLDWRTL------DTAALEALPGVGKKTARAWQRH 506

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
                  S  R++ +LG+  V  +      + Y         +  +      DW      
Sbjct: 507 FALADTRSAVRWLRALGVPAVPRQALTDALERYG--------MAGLGTLAPPDWRDYS-- 556

Query: 602 PLVGDIIAQAIVEFYQNPRNICAV 625
             +G+  A  +  F+++      +
Sbjct: 557 -GIGETRAMQLTRFFRDTDIRHWL 579


>gi|281603010|gb|ADA75994.1| DNA ligase B [Shigella flexneri 2002017]
          Length = 562

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 228/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 83  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  + + +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGPLANST-LQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 181 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 233 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 287 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 344 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 391

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +            C  Q + RL    S+    ++
Sbjct: 392 --------------------PTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLD 431

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 432 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 481

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            RN    R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 482 ARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 541

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 542 NAQIKKLGSWLAAQQITGFE 561


>gi|30065077|ref|NP_839248.1| NAD-dependent DNA ligase LigB [Shigella flexneri 2a str. 2457T]
 gi|56480394|ref|NP_709426.2| NAD-dependent DNA ligase LigB [Shigella flexneri 2a str. 301]
 gi|81839371|sp|Q83PM9|LIGB_SHIFL RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|30043338|gb|AAP19059.1| putative enzyme [Shigella flexneri 2a str. 2457T]
 gi|56383945|gb|AAN45133.2| putative enzyme [Shigella flexneri 2a str. 301]
 gi|332751117|gb|EGJ81520.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri 2747-71]
          Length = 560

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 120/620 (19%), Positives = 228/620 (36%), Gaps = 93/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  + + +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R   +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +            C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLS 597
            RN    R++ ++GI      + A   RS ++   S + F Q++       A    +W  
Sbjct: 480 ARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKE 539

Query: 598 LIRVPLVGDIIAQAIVEFYQ 617
             ++  +G  +A   +  ++
Sbjct: 540 NAQIKKLGSWLAAQQITGFE 559


>gi|270265241|ref|ZP_06193503.1| DNA ligase B [Serratia odorifera 4Rx13]
 gi|270040875|gb|EFA13977.1| DNA ligase B [Serratia odorifera 4Rx13]
          Length = 567

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 115/618 (18%), Positives = 222/618 (35%), Gaps = 93/618 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A   E+ + E+++L+ ++   D  YYQ    +I D  YD+L+++          L R 
Sbjct: 27  CPAWRPERLQLEITALKNQLERWDVAYYQQGDSLIEDQVYDSLRQKLQLWHRC-AGLERV 85

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           E+P+           L   K  H +    L K+ +   + +++      W          
Sbjct: 86  EEPSS---------LLPAGKTPHPVAHTGLHKLADPAAVDQWLRGRSDVW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  IT+ Y  G+   A  RG+G  GE+    +RAIP IP  +  + P  + ++
Sbjct: 127 -VQPKVDGVAITLVYRDGELAAAVSRGNGLQGENWLEKVRAIPAIPAAVK-DAPATLILQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++       +N     +      N R+  +G L +   + + + +  FV        
Sbjct: 185 GELFLM------VNGHQQKIHG--GINARSTVAGALMKNRLSPVLQQIGLFVWAWPDG-- 234

Query: 249 IFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              K   + LQ++  +GFP+     +  ++   +  +       R  LP+  DG+V    
Sbjct: 235 --PKEMTQRLQQLAAMGFPLALAYSQPVSSLDDVRQWRERW--YREALPFVTDGVVIHQA 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                +    +A+   W ++ K+   Q   R+ D++  +GRTG +  V +L+P+ +    
Sbjct: 291 RSPQGRYW--QAKPGDWAVAWKYPPVQQVARVNDVEFSVGRTGKIAVVLKLDPLRMDDKW 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++   L +    +              +  GD+V +   G  IP++  +           
Sbjct: 349 VSRVNLGSLPRWR-----------QWAVVPGDQVAISLMGNGIPRLDKVAWRT------- 390

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                      +  +    P   +  A    T    C  Q L RL          + G+ 
Sbjct: 391 -----------TERIEPSAPAADRYHALSCFTWLPECRQQFLARLVWLGGPQGLGLHGVS 439

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +               +R   D   L   Q  S        G GD    +++      R 
Sbjct: 440 ESTWQVLIDQ----GLVRHLLDWLVLTPEQLMSA------PGIGDKRGRSIHRQFQLARQ 489

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ +LG+     +                +  + I      +W  +     +G  
Sbjct: 490 QPFARWLIALGVPLSLQQTQAL------------KSWHQIRQLPVGEWRKMT---GIGAK 534

Query: 608 IAQAIVEFYQNPRNICAV 625
            A+ I  F Q+P  +  V
Sbjct: 535 KAEQITGFLQHPPFLTLV 552


>gi|283787721|ref|YP_003367586.1| DNA ligase [Citrobacter rodentium ICC168]
 gi|282951175|emb|CBG90867.1| putative DNA ligase [Citrobacter rodentium ICC168]
          Length = 560

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 127/620 (20%), Positives = 228/620 (36%), Gaps = 99/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A++E+S L Q+I+  DD Y++  K  I D  YD L+ R       F   A  
Sbjct: 21  CPNWSSARAQEEISRLRQQIARWDDDYWKKGKSAIEDGVYDQLRTRLGDWQRCFGGDATP 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                 L  IGG        V H +    ++K+ +   L++++      W          
Sbjct: 81  ----ALLPAIGG-------TVAHPVAHTGVKKLTDKRALQQWMAGRDDLW---------- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  G+   A  RGDG  GED +A ++ I  +P+ ++  +     ++
Sbjct: 120 -VQPKVDGVAVTLVYRNGRLTRAISRGDGLKGEDWTAKVQQIAAVPQTVTGGL-ANSVLQ 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE++  ++  +        +G K   N R   +G+L R   T        F+        
Sbjct: 178 GEIFWPQDRHI-----QQKMGGK---NARAKVAGLLMRRETTSEIASQGIFIWAWPDG-- 227

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              +   E + ++   GF +      A      +    +   S  S LP+  DG+V +  
Sbjct: 228 --PQSMAEKVTQLSQAGFTLTERFTLAVKNAQEVERARSHWWS--SGLPFVTDGVVVR-- 281

Query: 308 EFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
                K+ G R   P    W+ + K+        +  I   +G++G +  VA L PV + 
Sbjct: 282 ---TGKEPGARYWLPGQGNWLAAWKYPSVAQVAEVTAIRFMVGKSGKIAAVATLMPVMLD 338

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              +    L +    +             DI  GD++L+  AG+ IP++  ++   R  D
Sbjct: 339 DKRVQRVNLGSVRRWQ-----------EWDIAPGDQILISLAGQGIPRIDKVVW--RGVD 385

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                 P                   +  A        AC  Q + RL    SR   +IE
Sbjct: 386 RTKPVPPK-----------------DRFNALTCFYATDACQEQFISRLAWVGSRGVLDIE 428

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G G+       +           A IF+       +  +I+   GF       L+   N 
Sbjct: 429 GTGEAGWRALHQH-------HHFAHIFS---WLGLTLEQIQLTPGFTKARGEKLWHQFNL 478

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R    +R++ ++GI          L +  L+          + A +   W    ++P  
Sbjct: 479 ARKKPFKRWLLAMGIP---------LTQAALNISG-DSSWPQLAAQSEKHWR---QLPGT 525

Query: 605 GDIIAQAIVEFYQNPRNICA 624
           G   A +++E+ +    +  
Sbjct: 526 GAGRAASVIEWIRCAEIVAL 545


>gi|157149264|ref|YP_001456583.1| NAD-dependent DNA ligase LigB [Citrobacter koseri ATCC BAA-895]
 gi|157086469|gb|ABV16147.1| hypothetical protein CKO_05104 [Citrobacter koseri ATCC BAA-895]
          Length = 576

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 109/623 (17%), Positives = 229/623 (36%), Gaps = 105/623 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A  E++ L+Q+++  +D Y+Q     + DS YD L  +       F      
Sbjct: 38  CPDWSPARANDEIARLQQQLAQWNDSYWQQGVSAVDDSVYDQLSAQLVQWQRCF------ 91

Query: 69  EDPNGPLNKIGGEMNLSLFK-----VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                     GG+    L       + H +P   + K+ + + +++++ +    W     
Sbjct: 92  ----------GGDTGAELAPPVSGSLPHPVPHTGVRKLADKQAVQQWMRKRSDLW----- 136

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
                 ++PK+DG  +T+ Y  G+ V A  RG+G  GED +  +R IP +P+     +  
Sbjct: 137 ------VQPKVDGVAVTLVYRDGRLVSAISRGNGLKGEDWTQKVRLIPAVPQSTKGALAN 190

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
              ++GE+++  ++ +          +    N R+  +G++ R N T   + L+ F+   
Sbjct: 191 ST-LQGEIFLLHDNHIQ--------RQMGGMNARSKVAGMMMRQNNTSSLQSLSVFIWAW 241

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                       E L+++   GF       Q   +   +        +    LP+  DG+
Sbjct: 242 PDGPATMP----ERLRQLSGAGFGFAQQYSQPVKSADDVERVRTAWWTT--GLPFVTDGV 295

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V +  +    +          W+++ K+        +  +   +G++G ++ VA L PV 
Sbjct: 296 VVRTGKEPEARHWM--PGQGDWLVAWKYPPVAKVAEVTGVQFAVGKSGKISVVASLAPVM 353

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +    +    + +    +             DI  GD +LV  AG+ IP++  ++     
Sbjct: 354 LDDKRVKRVNVGSVRRWE-----------EWDIAPGDHILVSLAGQGIPRIDKVVWR--- 399

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT-GGLACSAQQLERLKHFVSRDAF 481
                               RD     G    A  C      C  Q + RL    S++A 
Sbjct: 400 -----------------STQRDKPAPPGNRYNALTCFYATEVCQEQFIARLVWLGSKEAL 442

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
            ++G+G+       ++            IF+       +  +++   GF       L+  
Sbjct: 443 EVDGMGEAGWRVLHQAHR-------FEHIFSWLA---LTQEQLQATPGFSKEKSKQLWHQ 492

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
            N  R+    R++ ++GI      +  +  + +            ++A   + W    ++
Sbjct: 493 FNLVRHRPFIRWVMAMGIPLTQGALKANGDRSWG----------QLLARTAEYWQ---QL 539

Query: 602 PLVGDIIAQAIVEFYQNPRNICA 624
           P  G+  A+ ++++  NP     
Sbjct: 540 PTTGEGRARRVIQWRDNPEIRAL 562


>gi|168017901|ref|XP_001761485.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687169|gb|EDQ73553.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1163

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 196/381 (51%), Gaps = 24/381 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            + +L + I+ +   Y+    P+I DS YDAL R    +    P  A  E       K+G
Sbjct: 319 RVETLRRVIADYSYQYHTLGNPLISDSAYDALVRELKDLESKLPAEASEE---SVTAKVG 375

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI----FFTLEPKID 135
               L + KV H++P LSL  ++  ++L+ +  R+ +   +  +        + +EPK+D
Sbjct: 376 APPPLEIAKVRHAVPMLSLAAVYKEDELKAWHERLQQRLNRMSNGEQPSTGAWVVEPKVD 435

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE------IIEVRG 189
           G  +T+ YE+GK V AA RGDG  GEDV+   R +  +P VLS +  E      ++EVRG
Sbjct: 436 GIALTLLYERGKLVCAATRGDGAEGEDVTHNARNLKGVPEVLSDHHKEINLQESVLEVRG 495

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR-RLNPTDITRYLNFFVHGL----- 243
           EVY++  DF  LND  +  G KP+ANPRNA +G +R   N     R L+F  + +     
Sbjct: 496 EVYMTLLDFQELNDMKVKGGEKPFANPRNATAGSMRILKNRDGDDRRLSFMAYAILSPED 555

Query: 244 -----GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
                 +T     + Q++ L  ++ L F VN+  R+  +F   + Y    +  RSTL Y+
Sbjct: 556 NVSAGVETPPRLVRAQWDALNLLKQLDFSVNDDNRKFASFDDALHYATRWRDSRSTLKYE 615

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DG+V+K+++ + Q +LG     PRW ++ KFA  +  T L  I++ IGR+G + P ARL
Sbjct: 616 SDGVVFKINDLATQAKLGVVGSDPRWAVAWKFAATEVVTILEGIELSIGRSGAIIPNARL 675

Query: 359 EPVNIGGALITNATLHNEDYI 379
           + + +  +        N  ++
Sbjct: 676 KDITVSSSSDGCPLHFNPKFM 696



 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 121/342 (35%), Gaps = 64/342 (18%)

Query: 412  KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
            +VV ++   R      +  P  CP C   +         K      C     C  +   +
Sbjct: 830  QVVQVLRELRSDHMHSWVPPDRCPFCNGEL------TVSKDNNITSCCNN-KCPGRHSRK 882

Query: 472  LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
            +KHF        +GLG   L    +    A  +  PAD + L     +         G G
Sbjct: 883  IKHFAKTL---FKGLGPSILSDLEE----AGMVVDPADFYALDVVSLSRLD------GLG 929

Query: 532  DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
            + S   L  +I + +  +L   I +LGI  VG   A+ L +++ S +         +   
Sbjct: 930  EKSAAKLVKAIEESKGKALWELITALGIPSVGVTAAKLLEQWFGSMERLLVASREEL--- 986

Query: 592  NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEI 647
                   + VP +G + A AI ++  +P N+  V    EA                 + +
Sbjct: 987  -------LLVPGIGTVSASAIHDWCTDPFNVQLVSSIKEAGFSPTFNDPEIENHAAGNAL 1039

Query: 648  E-----------------------------NKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                                           K +V TG  ++  R + ++ V   G  + 
Sbjct: 1040 SDSASQTTTSKVRTTDSEESKGNVETPRLQGKNVVVTGEFEEYSREQIEQLVVLNGGQLR 1099

Query: 679  AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
              ++ KT  I+ G +PG SK+ KA QL V +++   F  LL+
Sbjct: 1100 KSVNSKTSFIVAGQSPGPSKMTKAAQLAVPVLDISSFQQLLE 1141


>gi|166226376|sp|A8ARN4|LIGB_CITK8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 110/623 (17%), Positives = 227/623 (36%), Gaps = 105/623 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A  E++ L+Q+++  +D Y+Q     + DS YD L  +       F      
Sbjct: 22  CPDWSPARANDEIARLQQQLAQWNDSYWQQGVSAVDDSVYDQLSAQLVQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFK-----VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                     GG+    L       + H +P   + K+ + + +++++ +    W     
Sbjct: 76  ----------GGDTGAELAPPVSGSLPHPVPHTGVRKLADKQAVQQWMRKRSDLW----- 120

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
                 ++PK+DG  +T+ Y  G+ V A  RG+G  GED +  +R IP +P+     +  
Sbjct: 121 ------VQPKVDGVAVTLVYRDGRLVSAISRGNGLKGEDWTQKVRLIPAVPQSTKGALAN 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
              ++GE+++  ++ +          +    N R+  +G++ R N T   + L+ F+   
Sbjct: 175 ST-LQGEIFLLHDNHIQ--------RQMGGMNARSKVAGMMMRQNNTSSLQSLSVFIWAW 225

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                       E L+++   GF       Q   +   +        +    LP+  DG+
Sbjct: 226 PDGPATMP----ERLRQLSGAGFGFAQQYSQPVKSADDVERVRTAWWTT--GLPFVTDGV 279

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V +  +    +          W+++ K+        +  +   +G++G ++ VA L PV 
Sbjct: 280 VVRTGKEPEARHWM--PGQGDWLVAWKYPPVAKVAEVTGVQFAVGKSGKISVVASLAPVM 337

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +    +    + +    +             DI  GD +LV  AG+ IP++  ++     
Sbjct: 338 LDDKRVKRVNVGSVRRWE-----------EWDIAPGDHILVSLAGQGIPRIDKVVWR--- 383

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT-GGLACSAQQLERLKHFVSRDAF 481
                               RD     G    A  C      C  Q + RL    S++A 
Sbjct: 384 -----------------STQRDKPAPPGNRYNALTCFYATEVCQEQFIARLVWLGSKEAL 426

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
            ++G+G+       ++               L + Q  +T       GF       L+  
Sbjct: 427 EVDGMGEAGWRVLHQAHR----FEHIFSWLALTQEQLQAT------PGFSKEKSKQLWHQ 476

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
            N  R+    R++ ++GI      +  +  + +            ++A   + W    ++
Sbjct: 477 FNLVRHRPFIRWVMAMGIPLTQGALKANGDRSWG----------QLLARTAEYWQ---QL 523

Query: 602 PLVGDIIAQAIVEFYQNPRNICA 624
           P  G+  A+ ++++  NP     
Sbjct: 524 PTTGEGRARRVIQWRDNPEIRAL 546


>gi|290242978|ref|YP_003494648.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. K90mix]
 gi|288945483|gb|ADC73181.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. K90mix]
          Length = 652

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 157/715 (21%), Positives = 278/715 (38%), Gaps = 111/715 (15%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L       +  Y +  +P++ D+ YD L          F      +DP  P  K   
Sbjct: 30  VDELATACERLNASY-RAGQPLVPDAVYDHL----------FIATLSEKDPEHPFLKAVE 78

Query: 81  EMNLSLF--KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTLEPKIDG 136
               +     V H  P LS +K +  ++LR+F+ R+    +       ++ F + PK+DG
Sbjct: 79  PEGEAFEGDTVKHDTPMLSTDKAYTEDELRRFLGRVEVAAEALGIRSETLTFRMTPKLDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
               ++   G+ V    RG+G +G D+S          R L      +    GE+ + + 
Sbjct: 139 IA-GMQRPDGRLV---TRGNGFAGADISHAFE------RGLRTPDGSMEPGPGELVLEEM 188

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F    DE+      P  +PRN  +G +                      ++       +
Sbjct: 189 FF---QDEIRVAFGMP--HPRNFVAGFV---------------------GADTVKPHHQK 222

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNE-MKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
                  + FP         +   +++ + E M+++R  +PY  DG+V +V + +++  +
Sbjct: 223 AADAQAIIFFPYRQLPAWQASAAVVMASWQERMEALRQAVPYRTDGVVLEVTDETVKAHM 282

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +   RW ++ K   + A  R+ DI IQ GRTG +TPV   +PV + GA I+N T H 
Sbjct: 283 GSTSHHHRWRVALKTKGEVAHVRVRDIRIQTGRTGRITPVLEFDPVLLTGARISNVTAHT 342

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              +             + + VG  + + RAG+VIPK+  ++     P        + CP
Sbjct: 343 AANL-----------AQQGLGVGAEIEISRAGDVIPKLERVLEPASEPMTV-----THCP 386

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C            G+      C   + C AQ   RL+HF      N +  G + ++   
Sbjct: 387 SCGHEA-----EVEGEYAV---CPNTVGCLAQAEARLRHFFH-VMGNADLFGPKTVEVLV 437

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK--RRNISLERF 553
           ++            +F L      S        GFG    +NL   + +  R  +   RF
Sbjct: 438 ENGH-----TDLRGLFDLNAVAFVSM-------GFGPGQASNLVRELARCLREAVPDWRF 485

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +LG+RH+G   +R L   Y            + +  N     +  V   G I + +I 
Sbjct: 486 LAALGLRHLGRGDSRKLLAVYP-----------LESITNLTAEDIAAVEGFGPITSASIA 534

Query: 614 EFYQNPRNI--CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           E  Q  R      +          +          +  + +VFTGTL    R + +E   
Sbjct: 535 EQLQEQRERIEAMIRLGFNLERTPLAGEGAAAEGPLAGQSIVFTGTLTLGSRGELEEQAR 594

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-------VKIMNEEQFLFLLQ 719
            LGA + + ++ KT I++ G+  GSK +KA+ +        V+I++E  +   ++
Sbjct: 595 GLGATIQSGVNSKTTILVCGEKAGSKRKKAEAINEKAGKEQVRILDEAAWAAQME 649


>gi|271502618|ref|YP_003335644.1| DNA ligase [Dickeya dadantii Ech586]
 gi|270346173|gb|ACZ78938.1| DNA ligase (NAD(+)) [Dickeya dadantii Ech586]
          Length = 561

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 127/627 (20%), Positives = 230/627 (36%), Gaps = 94/627 (14%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P  A S  +A +E++ L Q+++  D+ YY   +  + D  YD L++        F  
Sbjct: 20  KAEPCPAWSPARAEQEIARLGQQLTQWDNAYYDRGQSPVDDQVYDQLRQTLATWQVCFQA 79

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
            A     + P          S  K  H +    L+K+    +L+++I +    W      
Sbjct: 80  DADGFAVSLP----------SSGKQPHPVAHTGLKKLTEPAELKQWIAQHRNLW------ 123

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PKIDG  +T+ YE+GK V A  RG+G  GED +  +R +  +P+ LS  I   
Sbjct: 124 -----IQPKIDGVAVTLVYEQGKLVSAISRGNGRQGEDWTDKVRQMNAVPQQLS-GISGR 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
           + ++GE+Y+S              G     N R   +G +RR  P+ +   ++ F+    
Sbjct: 178 LVLQGELYLSVTAH-----RQQQTGG---INARAQVAGEMRRKQPSPLLSRIDVFIWAWP 229

Query: 245 KTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                 +      L  +R LGF    +  +   +F     +        + LP+  DG+V
Sbjct: 230 DGPADMST----RLAALRELGFGLTADYTQPIASFEEAARWRERWYQ--APLPFVTDGVV 283

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
               +    +   +      W ++ K+      T +  +D++IGRTG +T V +++P+ +
Sbjct: 284 LHQSQEPAGRYWQDTP--AEWAVAWKYPLVNRVTEVTGVDVEIGRTGRMTVVLQVQPMML 341

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
               ++   L +    +             D+  GDRV +  AG  IP++  ++   R  
Sbjct: 342 DDKNVSRVNLGSVSRWR-----------QWDVLPGDRVSISLAGLGIPRLDAVVW--RGA 388

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             +  S P         V   L                 AC  Q L RL     R+  ++
Sbjct: 389 VREAISVPVASSF---DVFSCLQWSK-------------ACQPQFLARLVWMSGRNGLSL 432

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G+ +       +       +        L+  Q  +         F    V  +Y    
Sbjct: 433 SGISEGTWRRLIQQGK----VIDVVSWLALEPAQLAAGGD------FDKQHVERIYHQFQ 482

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + R   L +++ +LG+       AR  A    S++   Q                 +   
Sbjct: 483 RARRQPLRQWLLALGLPL--PSSARQ-ALDGASFEQLQQR----------SVAQWQQFSG 529

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK 630
           +G   AQ I +F     +   V  L  
Sbjct: 530 IGVRRAQRIRDFL---HHPEIVRQLTW 553


>gi|327395796|dbj|BAK13218.1| DNA ligase YicF [Pantoea ananatis AJ13355]
          Length = 589

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 123/619 (19%), Positives = 224/619 (36%), Gaps = 93/619 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A +  +A  E++ L+Q++   D  Y+Q  + ++ D++YD+L++R +     F   A  
Sbjct: 23  CPAWTSARAVSEIAHLQQQLRQWDKAYFQQGRSLVSDADYDSLQQRLNHWQRCFTQAADE 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P  P                H +    ++K+ +   L  ++      W          
Sbjct: 83  YVPALP----------EDGTQWHPVAHTGVKKVRDKRALGYWMQARNDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +++ Y +GK V    RGDG  GE   A  R IP IP V+  +    I ++
Sbjct: 123 -VQPKIDGVAVSLIYRQGKLVSLISRGDGLHGEQWLAKARHIPAIPSVI-DSQQGSIVLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++          + +  GR    N R   +G +     + +   L  F+        
Sbjct: 181 GELFLKMTGH----QQAVDGGR----NARARVAGAMMSQADSPLLAQLGIFIWSWPDGPA 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L ++   GF + +   Q        + + E +   + LP+  DG+V     
Sbjct: 233 SMP----ERLARLSSWGFDLASHWTQPVQDEEDAASWRE-RWFHAPLPFVTDGIVVHQAA 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               K    +     W I+ K+   + S+ +  +D  IGRTG +  V  ++PV +    +
Sbjct: 288 RPAGKYW--QPGEGEWAIAWKYQPPEVSSEVRSVDFSIGRTGKVAVVLNIQPVQLDDKTV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQ 426
               + +    +            +D+  GD+V V  AG+ IP++  +I    +R     
Sbjct: 346 RRVNIGSLKRWR-----------EQDVIAGDQVTVSLAGQGIPRLERVIWRVAQRDYPEP 394

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P S       C                     T    C  Q L RL     +   NI G+
Sbjct: 395 PGSEHFTHLSC--------------------YTLTPDCHRQLLARLSWLSQKFVLNIPGV 434

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            +        +            I  L      +  +I    G        ++      R
Sbjct: 435 QRSTWQRLLDTGC----------ITHLFSWLTITPEQIAAAAGISSERAQQIWHRFELTR 484

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L R++ +LGI  +  +  R+LA          +E   ++A +   W +   +P VG 
Sbjct: 485 QQPLRRWVNALGI-ALPQKALRALAD---------KEWEPLLARDVQTWQA---LPGVGA 531

Query: 607 IIAQAIVEFYQNPRNICAV 625
             A+ I   +Q+      +
Sbjct: 532 RRAERIAAQFQDAGLRKLI 550


>gi|161505725|ref|YP_001572837.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189046592|sp|A9MKM6|LIGB_SALAR RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|160867072|gb|ABX23695.1| hypothetical protein SARI_03901 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 561

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 116/631 (18%), Positives = 222/631 (35%), Gaps = 94/631 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +  +E++ L+Q+++  +D Y++     + DS YD L  +             S
Sbjct: 22  CPVWPSARTIEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSAKLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN             TH +    + K+ + + + +++     FW          
Sbjct: 82  TPVSPPLN----------GTTTHPVAHTGVRKLADRQAVAQWMRGHSEFW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR I +IP+     +     ++
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTQKIRQISSIPQTTRGAL-ANAVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++     +          R    N R+  +G+L R   T     L  F+        
Sbjct: 180 GEIFLQLKGHIQQ--------RMGGMNARSKVAGMLMRQKNTSALNSLGIFIWAWPDG-- 229

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +     Q       +        +  S LP+  DG+V ++ 
Sbjct: 230 --PANMTERLSQLAKAGFSLTQKYSQMVKNASEVERARRSWLT--SALPFVTDGVVIRMA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G ++ +A L PV +    
Sbjct: 286 KEPSSQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKISVIASLVPVMLDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 344 VKRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSR------ 386

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT-GGLACSAQQLERLKHFVSRDAFNIEGL 486
                          R      G    +  C      C  Q + RL    SR A  ++G+
Sbjct: 387 --------------ERSKPVPPGNHFNSLTCFYASATCQEQFISRLVWLGSRAALGLDGM 432

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+       ++            IF+       +  +I N  GF       ++   N  R
Sbjct: 433 GEASWRALHQTHR-------FEHIFSWLA---LTPAEIANTPGFAKGKSELIWRQFNLAR 482

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                R++ ++ I       A   A    S++      +              ++P  G+
Sbjct: 483 RQPFSRWVMAMDIPL---TQAALQASGDRSWEQLLMRTD----------QHWRQLPATGE 529

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
             A  + ++  NPR       L  +  P  G
Sbjct: 530 RRAGRVSDWRDNPRIKALSRWLAAQHIPGFG 560


>gi|238797649|ref|ZP_04641145.1| DNA ligase B [Yersinia mollaretii ATCC 43969]
 gi|238718513|gb|EEQ10333.1| DNA ligase B [Yersinia mollaretii ATCC 43969]
          Length = 565

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 113/633 (17%), Positives = 226/633 (35%), Gaps = 95/633 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S E+   E+ SL++++   D  Y+Q    ++ D  YD L+ +            R 
Sbjct: 27  CPEWSTERVSLEVHSLQKQLDQWDAIYHQQGVSLLTDDLYDQLQAKLQGWQVC-----RG 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +  +    ++ G       K +H +    L+K+ +  +L  ++ R  + W          
Sbjct: 82  QPDDTENRRVPG-----HGKFSHPVAHTGLKKLKDEAELANWMQRREKIW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK      RGDG  G++ S     I  IP+ ++   P ++ ++
Sbjct: 127 -VQPKVDGIAVTLVYQNGKLAQLLSRGDGLKGQNWSDKASFITAIPQTIAAAAP-MLTLQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R++ +G L R + + +   L  F+        
Sbjct: 185 GELFLQREGH--------KQAQFGGVNARSSVAGALMRKSSSPLLAQLGIFIWAWPDG-- 234

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              K   E  ++++ +GFP      +  ++   +  +          LP+  DG+V + +
Sbjct: 235 --PKSMMEKNRRLQKMGFPLTAQYSKPVSSAKDVAQWRERWYQT--PLPFVTDGVVIRQE 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E    +    +A    W ++ K+  +Q  T + DI   IGRTG +T + ++ PV I    
Sbjct: 291 EEPAGRYW--QAVPGPWSVAWKYPPQQKMTEIKDIHFTIGRTGKITVILQVSPVKIDDKW 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I    + +    +             DI +GD+V +  AG+ IP++ +++   R      
Sbjct: 349 IRRVNIGSIARWR-----------QWDITLGDQVTIALAGQGIPRLDNVVW--RVSQRHE 395

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            + P      Q    R L                  C  Q L RL         ++  +G
Sbjct: 396 LTPPERDKFHQLSCFRHL---------------PHECEPQFLSRLIWLSGPKGLDMRSIG 440

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                           ++      +L   Q        +I G       ++Y    + + 
Sbjct: 441 GGLWRELI----HHGLVKDLVGWLSLTTDQLA------DIPGVSLERAEDIYQQFQRAKQ 490

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               +++ +LG   V            +S  +    +                   VG +
Sbjct: 491 KPFSQWLQALGFPRV------------VSSDDHWHALQR------KSITEWSLASGVGLM 532

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
            A+ I+ F  +P      + L  +        E
Sbjct: 533 RAKQIIHFLHHPEVQAIADFLSTQRVAGFLPEE 565


>gi|332992966|gb|AEF03021.1| DNA ligase [Alteromonas sp. SN2]
          Length = 326

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 117/363 (32%), Positives = 190/363 (52%), Gaps = 38/363 (10%)

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           + +GG  ++NATLHN+D I  L            ++VGD V+++RAG+VIP+VV ++  +
Sbjct: 1   MFVGGVTVSNATLHNQDEIDRLG-----------VKVGDYVIIRRAGDVIPQVVSVVQAK 49

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  + +   FP+ CP+C S V +  +       A  RCTGGL C+AQ+ + LKHF SR A
Sbjct: 50  RDDNVKDIVFPTDCPVCGSNVEKLEDE------AVARCTGGLICAAQRKQALKHFASRKA 103

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+I+GLG + +D        A  +  PAD F L+         +  +    + S   L  
Sbjct: 104 FDIDGLGDKLVDQLVD----ADLVHSPADFFNLK------LGDVVGLERMAEKSAAKLLL 153

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+   +  +L +F+++LGIR VG   A +LA ++ + +          A  N     LI 
Sbjct: 154 SLEASKATTLAKFLYALGIREVGEATAANLALHFETLE----------AIRNASEDELIE 203

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQ 659
           V  VG I+A  +  F+  P N   ++ALL+         +K  S+  ++ K  V TGTL 
Sbjct: 204 VQDVGGIVAAHLHNFFNEPHNTDVIDALLEAGINWPAIEKKPQSALPLDGKTCVVTGTLS 263

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R   +  +  LGA V+  +S+ T  ++ G+  GSKL KAQ+L V++ +E + L  L 
Sbjct: 264 EMGRSDVKAKLQLLGAKVAGSVSKNTSFLVAGEKAGSKLTKAQELDVEVWDEAKLLAFLA 323

Query: 720 QYN 722
           +++
Sbjct: 324 EHD 326


>gi|46204823|ref|ZP_00049431.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 277

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 126/277 (45%), Positives = 180/277 (64%), Gaps = 2/277 (0%)

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL   +  E++ +F+ RI RF   + D  I FT EPKIDG  + +RYE GK V AA R
Sbjct: 1   MLSLGNAFADEEVEEFVARIRRFLNLQADAPIAFTAEPKIDGLSLFLRYEAGKLVTAATR 60

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG  GE+V+A    +  IP  LS  +IPE++EVRGEVY+S  DF A+N    A G+  +
Sbjct: 61  GDGEVGENVTANALTVKDIPETLSGADIPEVLEVRGEVYLSHADFAAINARQEAAGKPLF 120

Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+P    +R L FF +  G+ SE F + Q  +L +    G PVN   
Sbjct: 121 ANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEVSEPFTQTQSAVLDRFGGWGLPVNPQT 180

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           +   +   ++++Y  +++ R+ L YDIDG+VYKVD+   Q++LG  +R+PRW ++HKFA 
Sbjct: 181 KLCRSAEEMIAHYRAIEAERADLGYDIDGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAA 240

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++A T LL IDI +GRTG L P+ARL+PV +GG +++
Sbjct: 241 QEALTELLAIDINVGRTGSLNPLARLKPVTVGGVVVS 277


>gi|291619488|ref|YP_003522230.1| YicF [Pantoea ananatis LMG 20103]
 gi|291154518|gb|ADD79102.1| YicF [Pantoea ananatis LMG 20103]
          Length = 568

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 125/629 (19%), Positives = 229/629 (36%), Gaps = 93/629 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A +  +A  E++ L+Q++   D  Y+Q  + ++ D++YD+L++R +     F   A  
Sbjct: 2   CPAWTSARAVNEIAHLQQQLRQWDKAYFQQGRSLVSDADYDSLQQRLNHWQRCFTQAADE 61

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P  P                H +    ++K+ +   L  ++      W          
Sbjct: 62  YVPALP----------EDGTQWHPVAHTGVKKVRDKRALGYWMQARNDLW---------- 101

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +++ Y +GK V    RGDG  GE   A  R IP IP V+  +    I ++
Sbjct: 102 -VQPKIDGVAVSLIYRQGKLVSLISRGDGLHGEQWLAKARHIPAIPSVI-DSQQGSIVLQ 159

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++          + +  GR    N R   +G +     + +   L  F+        
Sbjct: 160 GELFLKMTGH----QQAVDGGR----NARARVAGAMMSQADSPLLAQLGIFIWSWPDGPA 211

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L ++   GF + +   Q        + + E +   + LP+  DG+V     
Sbjct: 212 SMP----ERLARLSSWGFDLASHWTQPVQDEEDAASWRE-RWFHAPLPFVTDGIVVHQAA 266

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               K    +     W I+ K+   + S+ +  +D  IGRTG +  V  ++PV +    +
Sbjct: 267 RPAGKYW--QPGEGEWAIAWKYQPPEVSSEVRSVDFSIGRTGKVAVVLNIQPVQLDDKTV 324

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQ 426
               + +    +            +D+  GD+V V  AG+ IP++  +I    +R     
Sbjct: 325 RRVNIGSLKRWR-----------EQDVIAGDQVTVSLAGQGIPRLERVIWRVAQRDYPEP 373

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P S       C                     T    C  Q L RL     +   NI G+
Sbjct: 374 PGSEHFTHLSC--------------------YTLTPDCHRQLLARLSWLSQKFVLNIPGV 413

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            +        +            I  L      +  +I    G        ++      R
Sbjct: 414 QRSTWQRLLDTGC----------ITHLFSWLTITPEQIAAAAGISSERAQQIWHRFELTR 463

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L R++ +LGI  +  +  R+LA          +E   ++A +   W +   +P VG 
Sbjct: 464 QQPLRRWVNALGI-ALPQKALRALAD---------KEWEPLLARDVQTWQA---LPGVGA 510

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS 635
             A+ I   +Q+      +  L ++  P+
Sbjct: 511 RRAERIAAQFQDAGLRKLITFLQQQGIPA 539


>gi|238794537|ref|ZP_04638145.1| DNA ligase B [Yersinia intermedia ATCC 29909]
 gi|238726117|gb|EEQ17663.1| DNA ligase B [Yersinia intermedia ATCC 29909]
          Length = 567

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 116/633 (18%), Positives = 216/633 (34%), Gaps = 95/633 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                 E+   E+++L+Q++      Y+Q    +I D  YD L+ +              
Sbjct: 29  CPEWPPERMSAEINTLKQQLDKWSVAYHQQGISLIADDVYDQLQEKLALWQSCH------ 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+      G  +        H +    L+K+ N   L  ++      W          
Sbjct: 83  RLPDNH----GNTLIPGNGTFRHPVAHTGLKKLKNEAALANWMVGRKSLW---------- 128

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK +    RG+G  G++ +     I  IP+ ++   P +  ++
Sbjct: 129 -VQPKVDGVAVTLVYQDGKLIQLLSRGNGLKGQNWTDKAPFITAIPQYIATAPPWLT-LQ 186

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++   D L               N R A +G L R +P  +   L  F+        
Sbjct: 187 GELFLQMGDHLQ--------ASSGGVNARAAVAGALMRKSPAALLPQLGIFIWAWPDG-- 236

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E  + ++ +GFP      +   +   +  + +      + LP+  DG+V +  
Sbjct: 237 --PSSMVEKGELLQAMGFPLTAKYSKPIASSRDVAHFRHHW--FHTALPFVTDGVVIRQA 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                +    +A    W ++ K+  +Q  T + DI   IGRTG +T V  + PV I    
Sbjct: 293 AEPAGRNW--QAVPGYWAVAWKYPAQQQITEIKDIHFTIGRTGRVTVVLLVSPVKIDDKW 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I    + +    +             DI  GD++++  AG  IP++  ++   R    Q 
Sbjct: 351 IRRVNVGSVSRWR-----------QWDITSGDQIIIALAGHGIPRLESVVW--RVSQRQE 397

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F+ P+     Q    R ++P                C  Q L RL         +I+ + 
Sbjct: 398 FTPPAGDQFHQLSCFRLISP---------------ECEPQLLSRLIWLSGPKGLDIQSIS 442

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                           I       +L R Q         + G G     N+Y      R 
Sbjct: 443 SGYWRDLI----HHGLINDLVGWLSLTRDQIAG------VPGIGTARAENIYQQFQSTRQ 492

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               +++ +LG               +            +   +  +W     +P +G +
Sbjct: 493 KPFSQWLQALG---------------FAQGIVVNSPWRLLQQRSIAEW---GLIPGIGPV 534

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
            A+ I  F  +P      + L  +        E
Sbjct: 535 RAKQITRFLHHPEVQAMADFLSHQNIAGFQHEE 567


>gi|156936180|ref|YP_001440096.1| NAD-dependent DNA ligase LigB [Cronobacter sakazakii ATCC BAA-894]
 gi|166226363|sp|A7MQB5|LIGB_ENTS8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|156534434|gb|ABU79260.1| hypothetical protein ESA_04079 [Cronobacter sakazakii ATCC BAA-894]
          Length = 561

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 117/619 (18%), Positives = 237/619 (38%), Gaps = 92/619 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               + +QA++E+++LE +++  D+ Y+ + +  + D+ YD++++R  A    F     +
Sbjct: 21  CPDWTPQQAQQEVAALENQLTRWDEAYWLHGENKVSDAVYDSMRQRLRAWQTCFALPVFN 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P          + L+  +  H +    ++K+ +   L +++      W          
Sbjct: 81  DAP----------VALAAGRTRHPVAHTGVQKLNDATSLSQWMHGKTDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +++ Y KGK      RGDG  GED +A  R IP IP  ++  + + + ++
Sbjct: 121 -VQPKVDGVAVSLVYRKGKLQQVISRGDGERGEDWTARARHIPAIPLQVTGELADSV-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +       D           N R   +G + R   + +   L+ F+        
Sbjct: 179 GELFLRQTGHRQQQD--------GGINARGQVAGAMMRSTVSSVLNDLDLFIWAWPDG-- 228

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              K     L  +   GFP+     +  ++   +     +  S    LP+  DG+V +  
Sbjct: 229 --PKAMEARLSTLAEGGFPLAQAWSKPVHSVSDVARLREQWFS--EPLPFVTDGVVIREG 284

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                K    R     W+++ K+   +  T +  +   +GRTG ++ VA+LEPV +    
Sbjct: 285 REPPGKSW--RPGEGSWVVAWKYPPAKQITEIKALRFAVGRTGKISVVAQLEPVTLDDKK 342

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  ++ +    + L           D+  GD+V +  AG+ IP++  +I          
Sbjct: 343 VSKVSIGSLARWEKL-----------DLAEGDQVEISLAGQGIPRLDAVIWR-------- 383

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                  P  + + V    P T +        G   C  Q + RL     +  F++ G+G
Sbjct: 384 -------PTQRIKPV----PPTARFDTLSCLYGTTGCEEQFISRLVWLSGKHVFDLAGMG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       +             +F+       S   ++   GF       L+   N  R 
Sbjct: 433 EATWRQLSEH-------HHFEHLFSWLA---LSVDALKQTPGFSAQRAAQLWHQFNLTRQ 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              +R++ +LG+                 +Q    +    +     D  S   +P VG  
Sbjct: 483 QPFQRWVKALGLPLPA-----------RDWQALTDDKWQQLQAR--DERSWQTLPGVGAE 529

Query: 608 IAQAIVEFYQNPRNICAVE 626
            A+ +V +  +P      E
Sbjct: 530 RARQLVSYIHHPDIAALAE 548


>gi|298712196|emb|CBJ33067.1| DNA ligase, NAD-dependent [Ectocarpus siliculosus]
          Length = 1170

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 163/467 (34%), Positives = 231/467 (49%), Gaps = 92/467 (19%)

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRV 176
             +    + F  EPKIDG    + YE G+FV AA RGDG  GEDV+A   A+    IP  
Sbjct: 387 GGEARAELCFVAEPKIDGLTCALLYEDGRFVRAATRGDGERGEDVTANALALGDAVIPHH 446

Query: 177 LSLNIP--------------------------------------EIIEVRGEVYISKNDF 198
           L L+                                           EVRGEV++S   F
Sbjct: 447 LPLSSAAAVAEGADGGAVPTREAEAAAAAAAAAERAPSSPVVPRGRFEVRGEVFMSDEAF 506

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF------- 250
             LN+E  A G   +A+ RNAA+G LR+L+P    R  L FF +G     E         
Sbjct: 507 ERLNEEREAEGLPAFASARNAAAGSLRQLDPAVTRRRGLRFFAYGAAVGQERGRSASEEA 566

Query: 251 -------------AKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLP 296
                           Q  +L  +   GF V    +    +   +V ++  +   RS+L 
Sbjct: 567 AAAAVGGDALASAFGTQDALLTALEGWGFEVARPRLPPTVSADELVEFHRRLARERSSLG 626

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           Y +DG+VYK+D+ +LQ++LG  AR+PRW ++HKF  ++  T L +I IQ+GRTG LTPVA
Sbjct: 627 YAVDGVVYKLDDLALQERLGASARAPRWAVAHKFGAEEGETVLSEIVIQVGRTGALTPVA 686

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            LEPV +GGA ++ ATLHN   ++ L            +R GDRV V+RAG+VIP+V+ +
Sbjct: 687 VLEPVLLGGATVSRATLHNAREVEEL-----------GLRPGDRVKVRRAGDVIPQVLGL 735

Query: 417 I---------VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
                       E   D+  F+FP+ CP C + VV++ +       A  RC  GL+C AQ
Sbjct: 736 ASPPHPDSSSAGEGDDDSARFAFPTCCPACGTPVVKEEDK------AVTRCPAGLSCPAQ 789

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514
            +ERLKHFVS+ AF+I+GLG  +L   ++    A  +R P D+  L+
Sbjct: 790 AVERLKHFVSKGAFDIQGLGPARLLELYE----AGIVRSPVDVLRLR 832



 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 39/233 (16%)

Query: 525  ENILGFGDVSVTNLYDSINKRRN-ISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQ 582
            E   G+G +S  N+ D++++ ++ +SL RFI+SLG+  VGA +A  +A+ +   ++ F  
Sbjct: 934  EGREGWGRLSARNVLDAVDRAKDGVSLGRFIYSLGVPLVGARMAEVIAEEFNGEFEAFWG 993

Query: 583  EINNII------------AHNNDDWLSLIRVPLVGDIIAQAIVEF-YQNPRNICAVEALL 629
             +                        +   +  +G  +  +++ F      N   VEAL 
Sbjct: 994  ALTRAGLPTPPKVVNGTGPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEALA 1053

Query: 630  KEVSPSIGRHEKNVSSE------------------------IENKKLVFTGTLQKIQRHK 665
             EV  S     ++                            +E K +VFTGTL +++R +
Sbjct: 1054 SEVRFSARARRRHAGGGEWMVALDAVVRKGGGGGSAGGGAWVEGKTVVFTGTLTRMKRTE 1113

Query: 666  AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             QE   +LGA V+  +SRKTD+++VG NPG KLEKA++LGV++++EE++   +
Sbjct: 1114 TQEAARELGARVTGSISRKTDMVVVGLNPGGKLEKARELGVEVVSEEEWYRRI 1166



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 42/137 (30%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS-- 85
           I+ HD  YY    P + D+EYDAL+ R   I  AFP L RS+ P+    ++G     +  
Sbjct: 191 IAAHDVRYYLEDVPSVTDAEYDALRLRNGEIEAAFPSLVRSDSPSS---RVGAASTTTDM 247

Query: 86  -------------------------------------LFKVTHSIPTLSLEKIWNIEDLR 108
                                                L  V H     SL+ +++ E   
Sbjct: 248 EALNNQQELPVAAAAATSDGEGGAAPAGPKASKRAARLPAVRHLRSLGSLDNVFDEEKAA 307

Query: 109 KFITRIYRFWQKKDDNS 125
           +F+ R+ R         
Sbjct: 308 EFVDRVRRAADVATLGE 324


>gi|170719684|ref|YP_001747372.1| NAD-dependent DNA ligase LigB [Pseudomonas putida W619]
 gi|257096560|sp|B1J2Z7|LIGB_PSEPW RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|169757687|gb|ACA71003.1| DNA ligase (NAD(+)) [Pseudomonas putida W619]
          Length = 567

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 123/619 (19%), Positives = 224/619 (36%), Gaps = 98/619 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S +QAR E++ L   ++  DD Y++    ++ D  YD  +     +   F      
Sbjct: 23  CPDWSTKQARTEVAQLRATLANWDDHYHRQGIALVADELYDQARHHLLHLQQCFGQEFTD 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P          +  +   + H +    +EK+ +   + +++T     W          
Sbjct: 83  PSP----------LASARGPIAHPVAHTGVEKLHDAAAVARWMTGKKGVW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +++ Y +G+ V    RGDG  G D S  I+ + +I R L    P  + ++
Sbjct: 123 -VQPKVDGVAVSLVYRQGRLVQLLSRGDGLQGHDWSRHIKDLDSITRQL--PQPLDVVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+Y+     +              +N R   +G+L R     +    +  FV       
Sbjct: 180 GELYLRLQAHVQ--------AEAGSSNVRGTVAGMLARKQLGPEPGASIGLFVWDWPHG- 230

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q E L ++   GFP +     A       +++  +   RS LP+  DG++ + D
Sbjct: 231 ---PDNQGERLTQLAAWGFPDSQRFSTAIDTPEEATHWR-LHWYRSPLPFATDGVILRQD 286

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                 +   +  +P W+ + K+   QA   + ++   IGRTG +TP+ RL+PV +    
Sbjct: 287 SRPPADRW--QPNAPYWIAAWKYPFAQALAEVREVRFLIGRTGKVTPLLRLKPVTLDDRR 344

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I+  +L +    + L           DIR GD+V +  AG  IP+   ++          
Sbjct: 345 ISQVSLGSLARWRAL-----------DIRPGDQVAISLAGLTIPRFDQVV---------- 383

Query: 428 FSFPSFCPICQSRVVRDLNP-KTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEG 485
                        V R + P    +    H C      C  Q + RL     +    + G
Sbjct: 384 ----------HRAVERQVLPVPEAEQYGQHSCWQASDGCQEQFIARLVWLSGKQGLAMPG 433

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
            GK       +    A  +    D  TL  +Q  S      + G    + T L  S +  
Sbjct: 434 TGKGTWKRLVQ----AGLVTSLTDWLTLDAQQLLS------VPGISRKTATQLQRSFDIG 483

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           RN    ++   LG+                      +    +   +  DW +   +P +G
Sbjct: 484 RNRPFAQWRKGLGVPAPAQV-------------PRDENWQTLAGRSASDWQT---LPGIG 527

Query: 606 DIIAQAIVEFYQNPRNICA 624
              A  +  F+ + +    
Sbjct: 528 ATRATQLANFFTHEQVQRI 546


>gi|325271326|ref|ZP_08137858.1| NAD-dependent DNA ligase LigB [Pseudomonas sp. TJI-51]
 gi|324103542|gb|EGC00857.1| NAD-dependent DNA ligase LigB [Pseudomonas sp. TJI-51]
          Length = 562

 Score =  336 bits (861), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 124/635 (19%), Positives = 238/635 (37%), Gaps = 97/635 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               + +Q   E++ L + +   DD Y++    ++ D  YD  ++R   +   F  LA  
Sbjct: 23  CPGWNPQQVASEVAQLRKTLGSWDDHYHRQGIALVPDELYDQSRQRLAQLQQCFG-LAGG 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P          +  +   V H IP   ++K+ +   +++++      W          
Sbjct: 82  PAP----------LANAGGPVPHPIPHTGIDKLHDRHAVQRWLAGKADVW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +++ Y +G+ V    RG+G  G D S  I  + +I R L   +   ++++
Sbjct: 122 -VQPKVDGVAVSLIYREGRLVQLISRGNGAQGHDWSRHIPQLGSITRQLPQAM--DLQLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GE+Y+       LN  + A      A  R+  +G+L R    ++    +  FV    +  
Sbjct: 179 GELYLR------LNAHVQAQAG--GAKARDTVAGLLARKRLSSEQGEAVGLFVWDWPQGP 230

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           E     Q E L ++  LGF  +     A NT      +        + LP+  DG+V + 
Sbjct: 231 EQ----QAERLAQLAQLGFADSQRYSVAINTLDEAAQWREHW--YHAALPFASDGVVLRQ 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
                 ++   +A++P W+ + K+   QA   + D+  ++GRTG +TPV  L PV +   
Sbjct: 285 GSRPPAERW--QAKAPYWLAAWKYPYMQALAEVRDVRFRVGRTGRVTPVLHLLPVTLDNR 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +T  ++ +      L           DIR GD+V V  AG  IP++  ++   R  +  
Sbjct: 343 RVTQVSMGSLARWHSL-----------DIRPGDQVAVSLAGLTIPRLEQVV--HRAVERV 389

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P + P+          +                  + C  Q + RL     +    +   
Sbjct: 390 PVAAPAADQYHAHSCWQ----------------ASVGCEEQFIARLAWLSGKHGLALLRT 433

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G         +              +L    Q   T++  + G  + +   L  S N  R
Sbjct: 434 GPGTWRRLVAAGLAT----------SLTDWLQLDATRLSEVAGISERTAAQLRSSFNDAR 483

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S ++++  LG                 +      +   + A   D W +   +P +G+
Sbjct: 484 TRSFDQWLRGLGAPL-------------PNGMQITGDWQALAARTADTWQA---LPGIGE 527

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
             A+ +V+F+           L +       R ++
Sbjct: 528 KRARQLVDFFAAAEVRAIATQLGEHGIEGFERPKQ 562


>gi|323228068|gb|EGA12205.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 276

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 147/280 (52%), Gaps = 8/280 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H IP LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
                  L + +  G PV++ V   ++   ++ +Y+ ++ 
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEK 275


>gi|213421996|ref|ZP_03355062.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 271

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 94/275 (34%), Positives = 149/275 (54%), Gaps = 8/275 (2%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+    P ILD+EYD L R    +    PDL     P+ P  ++G     +  ++ H +P
Sbjct: 2   YHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDSPTQRVGAAPLTAFNQIRHEVP 58

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ +++ E    F  R+    +  ++  + +  E K+DG  ++I YE G  V AA R
Sbjct: 59  MLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELKLDGLAVSILYENGVLVSAATR 116

Query: 155 GDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GED+++ +R I  IP  L   NIP  +EVRGEV++ +  F  +N++    G K +
Sbjct: 117 GDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVF 176

Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAA+G LR+L+P     R L FF +G+G              L + +  G PV++ 
Sbjct: 177 ANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLPVSDR 236

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 237 VTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 271


>gi|123440450|ref|YP_001004444.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166226365|sp|A1JHV9|LIGB_YERE8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|122087411|emb|CAL10192.1| putative DNA ligase [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 565

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 118/633 (18%), Positives = 223/633 (35%), Gaps = 95/633 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S E+   E+  LE+++   +  Y+Q     I D  YD L+ +              
Sbjct: 27  CPEWSEERMSGEMHLLEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWRLC------L 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+   N+          K+ H +    L+K+ +   L  ++T     W          
Sbjct: 81  GLPDKTDNR----PIPGNGKMLHPVAHTGLKKLKDEAALISWMTGRKNLW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ Y+ GK      RG+G  G++ +     I  IP+ ++ + P ++ ++
Sbjct: 127 -VQPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIA-SAPPLLTLQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GEV++                +   AN R + +G L R + + +   L  F+        
Sbjct: 185 GEVFLQMEGHQQ--------AQSGGANARASVAGALMRKSVSPLLAKLGIFIWAWPDG-- 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              K   E  + ++ +GFP+         +   +  + +    +   LP+  DG+V + +
Sbjct: 235 --PKSMVEKSRLLQEMGFPLTAHYSEPVISSSDVALWRDRWFKM--PLPFVTDGVVIRQE 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                +    +A    W ++ K+   Q  T + DI   +GRTG +T + ++ PV I    
Sbjct: 291 NVPAGRYW--QATPGNWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVIPVKIDDKW 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I    + +    K             DI  GD+V +  AG+ IP++  +I   R    Q 
Sbjct: 349 IRRVNIGSIARWK-----------QWDIVPGDQVTISLAGQGIPRLDKVIW--RVSQRQE 395

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P      Q    R L                  C  Q L RL      +  +++ +G
Sbjct: 396 IVPPDADKFHQLTCFRRL---------------PFECEPQFLSRLAWLSGTNGLDMQSVG 440

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                           I    D  +L      S  +I  + G G      +Y    + R 
Sbjct: 441 NGLWRELI----HHGFINGLLDWLSL------SVEQIAAVPGIGQGRAEKIYQQFQRARQ 490

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               +++ +LG               +          +++   +  +W  +   P +G +
Sbjct: 491 QPFSQWLQALG---------------FPQGIPLDTSWHSLRQRSIAEWRLM---PGIGQV 532

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
            A+ I  F  +P      + L ++        E
Sbjct: 533 RAKQINHFLHHPEVQMMADFLSQQGIAGFSPEE 565


>gi|300714635|ref|YP_003739438.1| NAD-dependent DNA ligase [Erwinia billingiae Eb661]
 gi|299060471|emb|CAX57578.1| Putative NAD-dependent DNA ligase [Erwinia billingiae Eb661]
          Length = 563

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 133/635 (20%), Positives = 245/635 (38%), Gaps = 94/635 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A +  +A +E+++LE ++S  DD YY+  +  + D  YDAL  +  +  H F      
Sbjct: 19  CPAWTPARAEQEMNALENQLSAWDDAYYRAGEQKVPDDRYDALALKYQSWQHCF------ 72

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P   L +          KV H +  + ++K+ + + L +++      W          
Sbjct: 73  -APGSDLRQ---PALARNGKVLHPVAHVGVKKVADQQALSRWMAGKDALW---------- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y++GK      RG+G  GED +   R IP IP+ ++L   + + ++
Sbjct: 119 -VQPKVDGVAVTLHYKRGKLAQVISRGNGLQGEDWTEKARFIPDIPQQIALG-SDSLVLQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+Y+   D      +   +G     N R   +G +RR  P+D    L  F+        
Sbjct: 177 GELYLKMTDH-----QQTLLGG---LNARATVAGAMRRNAPSDTLNRLGIFIWAWPDG-- 226

Query: 249 IFAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E ++++   GFP+     +   +   +  +     +    LP+  DG+V    
Sbjct: 227 --PATLRERIERLSEAGFPMMGEWSKPVRSAEEVAGWRERWFAQ--PLPFVTDGVVVHSQ 282

Query: 308 EFS-LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
                  Q GE A    W ++ K+     +T +  +D  IGRTG ++ V  L PV +   
Sbjct: 283 PVKGAYWQPGENA----WSVAWKYPPATVTTEVRSVDFPIGRTGKISTVLNLVPVKLDDK 338

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++   + + +  +             DI  GD+V V  AG+ IP++ +++   R  D  
Sbjct: 339 QVSRVNVGSFNRWR-----------EADIVAGDQVAVSLAGQGIPRLDEVVW--RVADRT 385

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P       + +   L+            +    C  Q L RL     R A  + G 
Sbjct: 386 LPELP------DATLFHPLS----------CFSLTPVCRQQLLARLVWLSGRAALTLSGA 429

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            +       +S            +  L      +  ++  I G        LY   N+  
Sbjct: 430 SESTWQRIMQSGQ----------LTHLFSWLTLTAEQLSQIAGITPARANQLYHQFNQTH 479

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
               +R++ +LG+  V  +   +L               ++++    DW    R+P +G+
Sbjct: 480 QQPFKRWVRALGVP-VPNKALDALDD---------DNWQSLLSRKVADWQ---RLPEIGE 526

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
             A  IV F Q+P     +  L   +  SI    +
Sbjct: 527 RRAGQIVTFLQHPDVQALIAFLSTHLQQSISVQHE 561


>gi|146305490|ref|YP_001185955.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina ymp]
 gi|172046035|sp|A4XPF7|LIGB_PSEMY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|145573691|gb|ABP83223.1| DNA ligase (NAD(+)) [Pseudomonas mendocina ymp]
          Length = 562

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 136/623 (21%), Positives = 231/623 (37%), Gaps = 102/623 (16%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-P 63
           Q  P       +A+ E ++L Q+I+  DD Y+   +  I D  YD  + R       F P
Sbjct: 18  QAEPCPDWPDSRAQVEFAALSQQIAQWDDAYHNQGRSPIADELYDQARERLQRWQQCFAP 77

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                 +P          +  S   + H +P   L K+ N   + ++I      W     
Sbjct: 78  ARQPLPEP----------LTGSAGPIAHPVPQTGLRKL-NDAAIGEWIGSRDDLW----- 121

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
                 ++PK+DG  +T+ Y +G+   A  RGDG  G+D SA  R +P +P  L   +  
Sbjct: 122 ------IQPKVDGVAVTLVYRQGRLHQAISRGDGRHGQDWSARARQLPAVPTRLPEAL-- 173

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242
            + ++GE+Y    D L          R   A  R   +G++ R   +D     +  FV  
Sbjct: 174 DLVLQGELYWRLEDHLQ--------ARDGGAGARGKVAGMMARHELSDTDGAAIGLFVWD 225

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                        E L +++ LGF  +    +   +      +       R  LP+  DG
Sbjct: 226 WPDG----PASMDERLSQLQALGFADSQHYSKPIRSVEEARQWRQHW--YRHRLPFASDG 279

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V +        +   +A +P W ++ K+   QA   +  +D +IGR+G +TPV RL+PV
Sbjct: 280 VVLRQGTRPAGARW--QAEAPHWAVAWKYPASQALAVVQAVDFRIGRSGRITPVLRLQPV 337

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           ++    I+   L +    K L           D+R GD+V ++ AG  IP++  +I   R
Sbjct: 338 DLDDRRISRVALGSVPTWKSL-----------DVRPGDQVAIRLAGLTIPRLDSVIW--R 384

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P   P   P                ++    A        +C  Q   RL    S+   
Sbjct: 385 SPHRAPVEVP----------------RSADYHALSCWRSSPSCQHQFQARLAWLSSKQGL 428

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
            + G+G             +  ++   D   L + Q  S        G G      L  +
Sbjct: 429 ALSGVGPGTWS--------SLPLQGLLDWLELDKAQLQSL------PGIGPRRAAQLQQA 474

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
             + R+  L++++ +LG                        +  ++I    DDWL     
Sbjct: 475 FAQARDRPLQQWLRALGAPP-------------GFDAGGLDDWPSLIERQRDDWLRR--- 518

Query: 602 PLVGDIIAQAIVEFYQNPRNICA 624
           P VG   A  ++ F+ +P     
Sbjct: 519 PGVGPKGADRLLAFFSHPEVQRL 541


>gi|318603769|emb|CBY25267.1| DNA ligase, LigB [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 565

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 115/633 (18%), Positives = 221/633 (34%), Gaps = 95/633 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               + E+   E+  LE+++   +  Y+Q     I D  YD L+ +              
Sbjct: 27  CPEWTEERMSGEMHLLEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWRLC------L 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    +          K+ H +    L+K+ +   L  ++T     W          
Sbjct: 81  GLPDKTDIR----PIPGNGKMLHPVAHTGLKKLKDEAALISWMTGRKDLW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ Y+ GK      RG+G  G++ +     I  IP+ ++ + P ++ ++
Sbjct: 127 -VQPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIA-SAPPLLTLQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GEV++                +   AN R + +G L R + + +   L  F+        
Sbjct: 185 GEVFLQMEGHQQ--------AQSGGANARASVAGALMRKSVSPLLAKLGIFIWAWPDG-- 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              K   E  + ++ +GFP+         +   +  + +    +   LP+  DG+V + +
Sbjct: 235 --PKSMVEKSRLLQEMGFPLTAHYSEPVISSSDVAQWRDRWFKM--PLPFVTDGVVIRQE 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                +    +A    W ++ K+   Q  T + DI   +GRTG +T + ++ PV I    
Sbjct: 291 NVPAGRYW--QATPGNWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKIDDKW 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I    + +    +             DI  GD+V +  AG+ IP++  +I   R    Q 
Sbjct: 349 IRRVNIGSIARWRL-----------WDIVPGDQVTISLAGQGIPRLDKVIW--RVSQRQE 395

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P      Q    R L                  C  Q L RL      +  +++ +G
Sbjct: 396 IVPPDADKFHQLTCFRRL---------------PFECEPQFLSRLAWLSGTNGLDMQSVG 440

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                           I    D  +L      S  +I  + G G      +Y    + R 
Sbjct: 441 NGLWRELI----HHGFINGLLDWLSL------SVEQIAAVPGIGQGRAEKIYQQFQRARQ 490

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               +++ +LG               +          +++      +W  +   P +G +
Sbjct: 491 QPFSQWLQALG---------------FPQGIPLDSSWHSLRQRGIAEWRLM---PGIGQV 532

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
            A+ I  F  +P      + L ++        E
Sbjct: 533 RAKQINHFLHHPEVQMMADFLSQQGIAGFSPEE 565


>gi|206576543|ref|YP_002235985.1| NAD(+)-dependent DNA ligase LigB [Klebsiella pneumoniae 342]
 gi|257096557|sp|B5XTF0|LIGB_KLEP3 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|206565601|gb|ACI07377.1| NAD(+)-dependent DNA ligase LigB [Klebsiella pneumoniae 342]
          Length = 558

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 119/631 (18%), Positives = 231/631 (36%), Gaps = 96/631 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  + R+E+S L Q+I    + Y++     + D  YD L  R       FP     
Sbjct: 21  CPDWPPARGRQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLAQWRQCFPGTTPE 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +D   P                H +    + K+ +   +  ++      W          
Sbjct: 81  DDDLPPPT----------GDARHPVAHTGVRKLADEVSVAHWMKNKTDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y +G  V A  RGDG  GE  +A  R IP +   ++        ++
Sbjct: 121 -IQPKVDGVAVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPAL-AKVTTGELANSVLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ ++  +    +  A G     N R   +G++ R +       L+ F+        
Sbjct: 179 GELFLRRDGHV----QQQAGG----MNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPS 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q    Q +   GF  +       T    V+ + + +  RS LP+  DG++ +   
Sbjct: 231 DMRRRQ----QLLTQAGFKYSGQYTHPVTRVEQVAQWRQ-RWYRSPLPFVSDGVIVR--- 282

Query: 309 FSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
               ++   RA SP    W+ + K+        +  I    GR+G L  VA+LEP  +  
Sbjct: 283 --EGREPPGRAWSPGKGEWLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDD 340

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +    + +    + L           DI VGD++ +  AG+ IP++  ++   R  + 
Sbjct: 341 KRVQRVNVGSVARWQAL-----------DIGVGDQLQISLAGQGIPRIDAVVW--RTAER 387

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                                P   K  A         CS Q L RL    S+ A +++G
Sbjct: 388 HK-----------------PTPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDG 430

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G+       +             IF+       +  +++ + G       +L+   +  
Sbjct: 431 VGEHLWRAIQQQNPMTH-------IFSWLA---LTVEQLQAVPGISAARGQHLWHQFDLV 480

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     R++ ++G+      +A+  ++ +            ++A  ++       +P VG
Sbjct: 481 RKRPFIRWVLAMGLPVPQGALAQLESENWH-----------LLAAKSEA--QWRALPGVG 527

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
           +I A+ +V F  +P  +   + L  +  P  
Sbjct: 528 EIRARQLVAFLHHPDVVALAQWLSGQRIPGF 558


>gi|332159673|ref|YP_004296250.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325663903|gb|ADZ40547.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 565

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 115/633 (18%), Positives = 221/633 (34%), Gaps = 95/633 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               + E+   E+  LE+++   +  Y+Q     I D  YD L+ +              
Sbjct: 27  CPEWTEERMSGEMHILEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWRLC------L 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    +          K+ H +    L+K+ +   L  ++T     W          
Sbjct: 81  GLPDKTDIR----PIPGNGKMLHPVAHTGLKKLKDEAALISWMTGRKDLW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ Y+ GK      RG+G  G++ +     I  IP+ ++ + P ++ ++
Sbjct: 127 -VQPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIA-SAPPLLTLQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GEV++                +   AN R + +G L R + + +   L  F+        
Sbjct: 185 GEVFLQMEGHQQ--------AQSGGANARASVAGALMRKSVSPLLAKLGIFIWAWPDG-- 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              K   E  + ++ +GFP+         +   +  + +    +   LP+  DG+V + +
Sbjct: 235 --PKSMVEKSRLLQEMGFPLTAHYSEPVISSSDVAQWRDRWFKM--PLPFVTDGVVIRQE 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                +    +A    W ++ K+   Q  T + DI   +GRTG +T + ++ PV I    
Sbjct: 291 NVPAGRYW--QATPGNWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKIDDKW 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I    + +    +             DI  GD+V +  AG+ IP++  +I   R    Q 
Sbjct: 349 IRRVNIGSIARWRL-----------WDIVPGDQVTISLAGQGIPRLDKVIW--RVSQRQE 395

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P      Q    R L                  C  Q L RL      +  +++ +G
Sbjct: 396 IVPPDADKFHQLTCFRRL---------------PFECEPQFLSRLAWLSGTNGLDMQSVG 440

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                           I    D  +L      S  +I  + G G      +Y    + R 
Sbjct: 441 NGLWRELI----HHGFINGLLDWLSL------SVEQIAAVPGIGQGRAEKIYQQFQRARQ 490

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               +++ +LG               +          +++      +W  +   P +G +
Sbjct: 491 QPFSQWLQALG---------------FPQGIPLDSSWHSLRQRGIAEWRLM---PGIGQV 532

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
            A+ I  F  +P      + L ++        E
Sbjct: 533 RAKQINHFLHHPEVQMMADFLSQQGIAGFSPEE 565


>gi|104783946|ref|YP_610444.1| NAD-dependent DNA ligase LigB [Pseudomonas entomophila L48]
 gi|123255217|sp|Q1I3X5|LIGB_PSEE4 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|95112933|emb|CAK17661.1| putative DNA ligase, NAD-dependent [Pseudomonas entomophila L48]
          Length = 557

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 133/626 (21%), Positives = 237/626 (37%), Gaps = 97/626 (15%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P      ++AR E+S L + +S+ DD Y++    ++ D  YD  ++    +   F DLA 
Sbjct: 22  PCPDWPAQRARAEVSQLLKTLSHWDDHYHRQGVALVADELYDQSRQHLRHLQGCF-DLAS 80

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           ++ P          +  +  +V H +P   ++K+ +   +++++      W         
Sbjct: 81  NDAP----------LATARGQVPHPVPHTGVDKLRDEPAVQRWLQGRQGMW--------- 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +++ Y++G+      RGDG  G D S  I  +  I R L    P     
Sbjct: 122 --IQPKVDGVAVSLVYQQGQLTQLLSRGDGVLGHDWSRHIPQLGRIVRQL--PQPLDTVF 177

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           +GE+Y    D +              AN R   +G+L R     +    +  FV      
Sbjct: 178 QGELYWRLADHVQ--------AEAGSANARGIVAGLLARKQLSDEQGSGIGLFVWDWPAG 229

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                  Q E L ++  LGF  +     A   F     +       R+ LP+  DG++ +
Sbjct: 230 PG----SQAERLAQLTALGFIDSQRFSVAIEGFDAAAHWRQHW--YRTALPFATDGVILR 283

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
            D     ++   RA++P W+ + K+   QA  ++ DI  +IGRTG +TP+ +LEP+ +  
Sbjct: 284 QDARPPAQRW--RAQAPYWIAAWKYPFSQALAQVRDIHFRIGRTGRITPLLQLEPIQLDD 341

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             I+  +L +      L           DIR GD+V V  AG  IP+V  ++   R P  
Sbjct: 342 RRISQVSLGSLARWTQL-----------DIRPGDQVAVSLAGLTIPRVESVV--HRSPLR 388

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P   P              +P    L++  +     AC  Q L RL         ++ G
Sbjct: 389 APVLVP--------------DPADHHLLSCWQ--ASPACQEQFLARLAWLGGNKGLDMAG 432

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G        +S      +   +D   L R           + G        L  + +  
Sbjct: 433 VGSGVWHQLVESGK----VATLSDWLELTREDLL------EVPGIAQARAERLLQAFSLG 482

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R    ER++  LG+             ++    +++       A  + +    +  P VG
Sbjct: 483 RRQPFERWLRGLGLPAP---------SHFSPGADWS-------ALASRNIEQWLAEPGVG 526

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE 631
            + A  +  F  + +       L   
Sbjct: 527 AVRAAQLQAFLSHEQVQALARRLRAH 552


>gi|288932991|ref|YP_003437050.1| DNA ligase (NAD(+)) [Klebsiella variicola At-22]
 gi|288887720|gb|ADC56038.1| DNA ligase (NAD(+)) [Klebsiella variicola At-22]
          Length = 558

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 119/631 (18%), Positives = 228/631 (36%), Gaps = 96/631 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  + R+E+S L Q+I    + Y++     + D  YD L  R       FP     
Sbjct: 21  CPDWPPARGRQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLTQWRQCFPGATPE 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +D   P                H +    + K+ +   +  ++      W          
Sbjct: 81  DDDLPPPT----------GDARHPVAHTGVRKLADEVSVAHWMKNKTDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y +G  V A  RGDG  GE  +A  R IP +   ++        ++
Sbjct: 121 -IQPKVDGVAVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPAL-AKVTTGELANSVLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ ++  +    +  A G     N R   +G++ R +       L+ F+        
Sbjct: 179 GELFLRRDGHV----QQQAGG----MNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPS 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q    Q +   GF  +       T    V+ + + +  RS LP+  DG++ +   
Sbjct: 231 DMRRRQ----QLLTQAGFKYSGQYTHPVTRVEQVAQWRQ-RWYRSPLPFVSDGVIVR--- 282

Query: 309 FSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
               ++   RA SP    W+ + K+        +  I    GR+G L  VA+LEP  +  
Sbjct: 283 --EGREPPGRAWSPGKGEWLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDD 340

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +    + +    + L           DI VGD++ +  AG+ IP++  ++   R  + 
Sbjct: 341 KRVQRVNVGSVARWQAL-----------DIGVGDQLQISLAGQGIPRIDAVVW--RTAER 387

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                                P   K  A         CS Q L RL    S+ A +++G
Sbjct: 388 HK-----------------PTPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDG 430

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G+       +             IF+       +  +++ + G       +L+   +  
Sbjct: 431 VGENLWRAIQQQNPMTH-------IFSWLA---LTVEQLQAVPGISAARGQHLWHQFDLV 480

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     R++ ++G+                +      E  +++A  ++       +P VG
Sbjct: 481 RKRPFIRWVLAMGLPVPQ-----------GALTQLESENWHLLAAKSEA--QWRALPGVG 527

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
           +I A+ +V F  +P  +   + L  +  P  
Sbjct: 528 EIRARQLVAFLHHPDVVALAQWLSGQRIPGF 558


>gi|238784014|ref|ZP_04628030.1| DNA ligase B [Yersinia bercovieri ATCC 43970]
 gi|238715122|gb|EEQ07118.1| DNA ligase B [Yersinia bercovieri ATCC 43970]
          Length = 553

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 118/618 (19%), Positives = 228/618 (36%), Gaps = 93/618 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S E+   E++SL++++   D  Y+Q    ++ D  YD L+ +              
Sbjct: 15  CPEWSAERVSLEVNSLKKQLDKWDAAYHQQGVSLLEDDIYDQLQIKLQGWQVC------G 68

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+   NK          K +H +    L+K+ +  ++  ++ R  + W          
Sbjct: 69  GQPDSTENK----GVPGHGKFSHPVAHTGLKKLKSETEVANWMLRREKLW---------- 114

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK +    RGDG  G++ S     I  IP  ++   P ++ ++
Sbjct: 115 -VQPKVDGVAVTLVYQNGKLMQLLSRGDGWKGQNWSDKAPFIAAIPHYIAGAPP-LLTLQ 172

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++                +    N R++ +G L R + + +   L  F+        
Sbjct: 173 GELFLQMEGH--------KQAQFGGVNARSSVAGALMRKSSSPLLAQLGIFIWAWPDG-- 222

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   E   +++ +GFP+     +  T    V+ + E +  ++ LP+  DG+V + +E
Sbjct: 223 --PKSMVEKNMRLQDMGFPLTAQYSKPVTSAKDVARWRE-RWHQTPLPFVTDGVVIRQEE 279

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +    +A    W ++ K+  +Q    + DI   IGRTG +T V ++ PV I    I
Sbjct: 280 EPAGRYW--QAVPGPWSVAWKYPPQQQMAEIKDIQFTIGRTGKITVVLQVSPVKIDDKWI 337

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               + +    +             DI  GD+V +  AG+ IP++ +++   R      F
Sbjct: 338 RRVNIGSIARWR-----------QWDITTGDQVTITLAGQSIPRLNNVVW--RVNQRHKF 384

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P      Q    R+L                  C  Q L RL         N+  +  
Sbjct: 385 TPPDGDKFHQLSCFRNL---------------PYECEPQFLSRLIWLSGPKGLNMHNISG 429

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                          ++      +L   Q      I +I G       ++Y    +    
Sbjct: 430 GLWRELI----HHGLVKDLVGWLSLTPDQ------IADIPGISRDRAESIYQQFQRTTQK 479

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              +++ +LG   V          ++ S Q  +     ++             P VG + 
Sbjct: 480 PFSQWLQALGFPLVTFSNG-----HWHSLQRKSIAEWRLM-------------PGVGPVR 521

Query: 609 AQAIVEFYQNPRNICAVE 626
           A+ I +F  +P      +
Sbjct: 522 AKQINDFLHHPEVQTMAD 539


>gi|290511785|ref|ZP_06551153.1| DNA ligase (NAD+) [Klebsiella sp. 1_1_55]
 gi|289775575|gb|EFD83575.1| DNA ligase (NAD+) [Klebsiella sp. 1_1_55]
          Length = 559

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 116/629 (18%), Positives = 226/629 (35%), Gaps = 91/629 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  + R+E+S L Q+I    + Y++     + D  YD L  R       FP     
Sbjct: 21  CPEWPPARGRQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLAQWRQCFPGATPE 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +D   P                H +    + K+ +   +  ++      W          
Sbjct: 81  DDDLPPPT----------GDTRHPVAHTGVRKLADEASVAHWMKNKADLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y +G  V A  RGDG  GE  +A  R IP +   L+        ++
Sbjct: 121 -VQPKVDGVAVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPAL-AKLTTGELANSVLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+++ +   +    +  A G     N R   +G++ R +        L+ F+       
Sbjct: 179 GELFLRREGHI----QQQAGG----MNARAKVAGLMMRADAAAAPLSQLDVFIWAWPDGP 230

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               + Q    Q +   GF  +     + T    V+ + + +  RS LP+  DG++ +  
Sbjct: 231 SDMRRRQ----QLLAQAGFGYSGQYTHSVTRVEQVAQWRQ-RWYRSPLPFVSDGVIVREG 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                +          W+ + K+        +  I    GR+G L  VA+LEP  +    
Sbjct: 286 HEPPGRVW--SPGKGEWLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    + L           DI VGD++ +  AG+ IP++  ++   R  +   
Sbjct: 344 VQRVNVGSVARWQAL-----------DIGVGDQLQISLAGQGIPRIDAVVW--RTAERHK 390

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                              P   K  A         CS Q L RL    S+ A +++G+G
Sbjct: 391 -----------------PTPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGVG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       +             IF+       +  +++ + G       +L+   +  R 
Sbjct: 434 EHLWRAIQQQNPMTH-------IFSWLA---LTVEQLQAVPGISAARGQHLWHQFDLVRK 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++G+      +A+  ++ +            ++A  ++       +P VG+I
Sbjct: 484 RPFIRWVLAMGLPVPQGALAQLESENWH-----------LLAAKSEA--QWRALPGVGEI 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            A+ +V F  +P  +   + L  +  P  
Sbjct: 531 RARQLVAFLHHPDVVALAQWLSGQRIPGF 559


>gi|238897097|ref|YP_002921843.1| NAD-dependent DNA ligase LigB [Klebsiella pneumoniae NTUH-K2044]
 gi|238549425|dbj|BAH65776.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 565

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 120/632 (18%), Positives = 234/632 (37%), Gaps = 98/632 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  + R+E S L Q+I    + Y++     + D  YD L  R       FP     
Sbjct: 28  CPDWPPARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPE 87

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +D   P                H +    + K+ + + + +++      W          
Sbjct: 88  DDDLPPPT----------GDARHPVAHTGVRKLADEDSVARWMKNKSDLW---------- 127

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y +G+ V A  RGDG  GE  +A  R IP + +V++  + + + ++
Sbjct: 128 -IQPKVDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELADSV-LQ 185

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ ++  +    +  A G     N R   +G++ R +       L+ F+        
Sbjct: 186 GELFLRRDGHV----QQRAGG----MNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPS 237

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              + Q    Q +   GF  +       +    +  +       RS LP+  DG++ +  
Sbjct: 238 DMRRRQ----QLLAQAGFKYSGQYTHPVSRIEQVAQWRQRW--YRSPLPFVSDGVIVR-- 289

Query: 308 EFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
                ++   R  SP    W+ + K+       ++  I    GR+G L  VA LEP  + 
Sbjct: 290 ---EGREPPGRVWSPGKGEWLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLD 346

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              +    + +    + L           DI VGD++ +  AG+ IP+V  ++   R  +
Sbjct: 347 DKRVQRVNVGSVSRWQML-----------DIGVGDQLQISLAGQGIPRVDAVVW--RTAE 393

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   K  A         CS Q L RL    S+ A N++
Sbjct: 394 RHK-----------------PTPPPAKFNALTCYFATPECSEQFLSRLIWLSSKSALNVD 436

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       +             IF+       +  +++ + G       +L+   + 
Sbjct: 437 GVGENLWRVIQQQNPMTH-------IFSWLA---LTVEQLQALPGISAARGQHLWHQFDL 486

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R     R++ ++GI      +A+  ++ +            ++A  ++       +P V
Sbjct: 487 VRKRPFIRWVLAMGIPVPQGALAQLESENWH-----------LLAAKSEA--QWRTLPGV 533

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
           G+I A+ +V F  +P  +   + L  +  P  
Sbjct: 534 GEIRARQLVAFLHHPDVVALAQWLSGQRIPGF 565


>gi|320177344|gb|EFW52346.1| DNA ligase , LigB [Shigella dysenteriae CDC 74-1112]
          Length = 508

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 107/556 (19%), Positives = 204/556 (36%), Gaps = 86/556 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+   +Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 284

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L  V +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       +  +++N  G        L+   N 
Sbjct: 430 GIGEAGWRALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIR 560
            R     R++ ++GI 
Sbjct: 480 ARKQPFTRWVMAMGIP 495


>gi|329996951|ref|ZP_08302648.1| NAD-dependent DNA ligase OB-fold domain protein [Klebsiella sp. MS
           92-3]
 gi|328539241|gb|EGF65270.1| NAD-dependent DNA ligase OB-fold domain protein [Klebsiella sp. MS
           92-3]
          Length = 564

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 120/632 (18%), Positives = 234/632 (37%), Gaps = 98/632 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  + R+E S L Q+I    + Y++     + D  YD L  R       FP     
Sbjct: 27  CPDWPPARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPE 86

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +D   P                H +    + K+ + + + +++      W          
Sbjct: 87  DDDLPPPT----------GDARHPVAHTGVRKLADEDSVARWMKNKSDLW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y +G+ V A  RGDG  GE  +A  R IP + +V++  + + + ++
Sbjct: 127 -IQPKVDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELADSV-LQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ ++  +    +  A G     N R   +G++ R +       L+ F+        
Sbjct: 185 GELFLRRDGHV----QQQAGG----MNARAKVAGLMMRADAAAALGQLDVFIWAWPDGPS 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              + Q    Q +   GF  +       +    +  +       RS LP+  DG++ +  
Sbjct: 237 DMRRRQ----QLLAQAGFKYSGQYTHPVSRIEQVAQWRQRW--YRSPLPFVSDGVIVR-- 288

Query: 308 EFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
                ++   R  SP    W+ + K+       ++  I    GR+G L  VA LEP  + 
Sbjct: 289 ---EGREPPGRVWSPGKGEWLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLD 345

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              +    + +    + L           DI VGD++ +  AG+ IP+V  ++   R  +
Sbjct: 346 DKRVQRVNVGSVSRWQML-----------DIGVGDQLQISLAGQGIPRVDAVVW--RTAE 392

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   K  A         CS Q L RL    S+ A N++
Sbjct: 393 RHK-----------------PTPPPAKFNALTCYFATPECSEQFLSRLIWLSSKSALNVD 435

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       +             IF+       +  +++ + G       +L+   + 
Sbjct: 436 GVGENLWRVIQQQNPMTH-------IFSWLA---LTVEQLQAVPGISAARGQHLWHQFDL 485

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R     R++ ++GI      +A+  ++ +            ++A  ++       +P V
Sbjct: 486 VRKRPFIRWVLAMGIPVPQGALAQLESENWH-----------LLAAKSEA--QWRTLPGV 532

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
           G+I A+ +V F  +P  +   + L  +  P  
Sbjct: 533 GEIRARQLVAFLHHPDVVALAQWLSGQRIPGF 564


>gi|218509071|ref|ZP_03506949.1| NAD-dependent DNA ligase LigA [Rhizobium etli Brasil 5]
          Length = 275

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 151/272 (55%), Positives = 204/272 (75%), Gaps = 1/272 (0%)

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD   LQ++LG R+RSPRW
Sbjct: 1   GFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVDSLELQQRLGFRSRSPRW 60

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+ +GG ++TNATLHNEDYIKG+  
Sbjct: 61  ATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVVVTNATLHNEDYIKGIGN 120

Query: 385 SGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
           SG+ +R    DIR  D V+V+RAG+VIP+++D+++ +R  DA+ + FP  CP+C S  VR
Sbjct: 121 SGERIRPEEHDIRERDTVIVQRAGDVIPQILDVVMEKRAADARSYEFPKTCPVCGSHAVR 180

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           ++N KTGK  +  RCTGG  C AQ  E LKHFVSR+AF+IEGLG +Q+DFFF++EDP+  
Sbjct: 181 EVNEKTGKTDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGLGSKQVDFFFENEDPSLQ 240

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           IR   +IFTL++RQQ S TK+ENI GFG VSV
Sbjct: 241 IRTAPEIFTLEKRQQDSLTKLENIDGFGKVSV 272


>gi|308188670|ref|YP_003932801.1| DNA ligase [Pantoea vagans C9-1]
 gi|308059180|gb|ADO11352.1| DNA ligase [Pantoea vagans C9-1]
          Length = 583

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 121/632 (19%), Positives = 230/632 (36%), Gaps = 99/632 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               +  +A +E+  L+Q++ + DD YY+  +  + D++YDAL++R     H F      
Sbjct: 25  CPVWTPNRATEEIRRLQQQLQHWDDAYYRQGQSPVADADYDALQQRLIQWQHCF------ 78

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                P                H +    ++K+ +   L  ++      W          
Sbjct: 79  ----SPYQPAYAPQLPGNGTSLHPVAHTGVKKMRDKLALAYWMQGRRDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +++ Y +G+ V    RGDG  GE+  A    IP IP  +   + E++ ++
Sbjct: 125 -VQPKVDGIAVSLVYRQGRLVSLLSRGDGLRGEEWLAKAAWIPAIPLNIETRLDEVV-LQ 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++   D      +    G K   N R   +G +       +   L+ F+        
Sbjct: 183 GELFLPMTDH-----QQAIDGGK---NARTQVAGAMMSKQRVPLLNSLDVFIWAWPDG-- 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L+++   G  +             + ++ +      + LP+  DG+V    
Sbjct: 233 --PATMTERLEQLSRWGLGIAAKWSHSVKDEEEVAAWRDRW--FHAALPFVTDGVVVHQS 288

Query: 308 EFSLQKQL--GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
                K    GE      W ++ K+   + S  +L +D  +GRTG +  V  L+PV +  
Sbjct: 289 LRPAGKNWLPGEGT----WAVAWKYQPPEVSAEVLSVDFPVGRTGKIAAVLNLQPVQLDD 344

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHP 423
             +    + +    +             DI  GD + +  AG+ IP++  +I    ER  
Sbjct: 345 KTVRRVNVGSLRRWQ-----------ESDIVAGDVITLSLAGQGIPRLERVIWRVAERDY 393

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
              P +       C                     T    C  Q L +L+    +   NI
Sbjct: 394 PQPPDASHYTPLSC--------------------YTFSAECQKQLLAKLRWLSQKTVLNI 433

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G+ +       ++              TL   Q  + T      GF     + L+   N
Sbjct: 434 PGVERSTWLRLLETGSMTHLF----GWLTLTPEQIAAAT------GFSPERASQLWHRFN 483

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R     R++ +LGI  +  +  +SL           Q+  +++  +   W +   +P 
Sbjct: 484 LTRQQPFRRWVDALGI-SLPRKALKSLPD---------QQWESLMQRDVTGWQA---LPG 530

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           VG  +A+ +V  + + R    +  L ++  PS
Sbjct: 531 VGAALAKRLVAQFHDARVQALIAFLQQQGIPS 562


>gi|152972501|ref|YP_001337647.1| NAD-dependent DNA ligase LigB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|166226364|sp|A6TFP6|LIGB_KLEP7 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|150957350|gb|ABR79380.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 564

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 119/632 (18%), Positives = 234/632 (37%), Gaps = 98/632 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                + + R+E S L Q+I    + Y++     + D  YD L  R       FP     
Sbjct: 27  CPDWPLARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPE 86

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +D   P                H +    + K+ + + + +++      W          
Sbjct: 87  DDDLPPPT----------GDARHPVAHTGVRKLADEDSVARWMKNKSDLW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y +G+ V A  RGDG  GE  +A  R IP + +V++  + + + ++
Sbjct: 127 -IQPKVDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELADSV-LQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ ++  +          +    N R   +G++ R +       L+ F+        
Sbjct: 185 GELFLRRDGHVQQ--------QTGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPS 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              + Q    Q +   GF  +       +    +  +       RS LP+  DG++ +  
Sbjct: 237 DMRRRQ----QLLAQAGFKYSGQYTHPVSRIEQVAQWRQRW--YRSPLPFVSDGVIVR-- 288

Query: 308 EFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
                ++   R  SP    W+ + K+       ++  I   IGR+G L  VA LEP  + 
Sbjct: 289 ---EGREPPGRVWSPGKGEWLAAWKYPPASRVMQVRAIRFSIGRSGRLNVVAELEPQRLD 345

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              +    + +    + L           DI VGD++ +  AG+ IP+V  ++   R  +
Sbjct: 346 DKRVQRVNVGSVSRWQML-----------DIGVGDQLQISLAGQGIPRVDAVVW--RTAE 392

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   K  A         CS Q L RL    S+ A N++
Sbjct: 393 RHK-----------------PTPPPAKFNALTCYFATPECSEQFLSRLIWLSSKSALNVD 435

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       +             IF+       +  +++ + G       +L+   + 
Sbjct: 436 GVGENLWRVIQQQNPMTH-------IFSWLA---LTVEQLQAVPGISAARGQHLWHQFDL 485

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R     R++ ++GI      +A+  ++ +            ++A  ++       +P V
Sbjct: 486 VRKRPFIRWVLAMGIPVPQGALAQLESENWH-----------LLAAKSEA--QWRTLPGV 532

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
           G+I A+ +V F  +P  +   + L  +  P  
Sbjct: 533 GEIRARQLVAFLHHPDVVALAQWLSGQRIPGF 564


>gi|330501400|ref|YP_004378269.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01]
 gi|328915686|gb|AEB56517.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01]
          Length = 564

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 135/641 (21%), Positives = 238/641 (37%), Gaps = 98/641 (15%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLA 66
           P    +  +A  EL +L ++I+  DD Y+     ++ D  YD  + R  A    FP  L 
Sbjct: 19  PCPNWADARAAMELGALSRQIAEWDDAYHNQGHSLVADEIYDQARGRLQAWHQCFPTALD 78

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              +P          +  S  K+ H +    L K+ N   + ++I      W        
Sbjct: 79  NLPEP----------LAGSTGKLAHPVAQTGLRKL-NDAAVAEWIASRSDLW-------- 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              ++PK+DG  +T+ Y  G   +A  RGDG  G+D +A  R +P +P  L    P    
Sbjct: 120 ---IQPKVDGVAVTLVYRHGVLQHAVSRGDGRHGQDWTARARQLPGVPTRLPE--PLDAV 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           ++GE+Y        LN+ + +      A  R   +G++ R          +  FV     
Sbjct: 175 LQGELYWR------LNEHVQSRDG--GAGARGKVAGLMARQTLDQHEADAIGLFVWDWPD 226

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             E       E LQ +  LGF  +    +   +      +           P+  DG+V 
Sbjct: 227 GPEQMP----ERLQALHRLGFSDSLQYTQALRSPDQASLWRQRWFDQ--PQPFASDGVVL 280

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           +       ++   +A +P W I+ K+   QA   +  +   IGRTG +TP+  L+PV++ 
Sbjct: 281 RQGTRPSGERW--QAEAPHWAIAWKYPASQALAVVQAVHFSIGRTGRITPILHLQPVDLD 338

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              I+   L +    + L           DIR GD+V ++ AG  IP++  +I   R P+
Sbjct: 339 ERRISRVALGSLQSWEKL-----------DIRPGDQVSIRLAGLTIPRLDQVIW--RSPE 385

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                           VV   +P     ++  R +    C  Q L RL     +   N+ 
Sbjct: 386 R--------------AVVHAPDPDQYHALSCWRLSA--ECRQQFLARLNWLAGKQGLNLN 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG         SE           +  L    +  + +++ + G G    + L  S  +
Sbjct: 430 GLGPGTWSTLLASEQ----------LDGLLDWLEFDSQRLQQLPGIGPRRASQLQQSFAQ 479

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  SL++++ +LG        A               +   ++  N  +W+     P +
Sbjct: 480 AQQRSLQQWLQALGAPPDLKLGAE-------------DDWATLLTRNRAEWMQQ---PGM 523

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
               A+ ++ F+ +P      E L +         E +   
Sbjct: 524 SQKSAERLLAFFSHPEVQRLGERLQRAGIAGFQPREHSPQG 564


>gi|213024998|ref|ZP_03339445.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 262

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 114/280 (40%), Positives = 174/280 (62%), Gaps = 27/280 (9%)

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           +DIDG+V KV+  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVA
Sbjct: 10  FDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVA 69

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           RLEPV + G L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV++
Sbjct: 70  RLEPVQVAGVLVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNV 118

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +++ER  + +P  FP+ CP+C S V R          A  RCTGGL C AQ+ E LKHFV
Sbjct: 119 VLSERPEETRPIVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFV 172

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR A +++G+G + +D   + E     +  PAD+F L   + T   ++      G  S  
Sbjct: 173 SRRAMDVDGMGDKIIDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQ 222

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
           N+ +++ K +  +  RF+++LGIR VG   A  LA Y+ +
Sbjct: 223 NVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGT 262


>gi|118602318|ref|YP_903533.1| DNA ligase (NAD(+)) [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166216237|sp|A1AVV5|DNLJ_RUTMC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118567257|gb|ABL02062.1| DNA ligase (NAD(+)) [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 614

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 157/723 (21%), Positives = 296/723 (40%), Gaps = 122/723 (16%)

Query: 9   IEALSIEQARK--ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           ++ LS E+  +  ++++L           Y+  KPII D +YD +    DA+        
Sbjct: 1   MDELSDEELAQFCQIANLA----------YRAGKPIISDQDYDFIY--LDAL-------- 40

Query: 67  RSEDPNGPLNKIGGEMNLSL--FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--D 122
           ++ DP+  L K       S    KV      LS++K ++ +++ K+I R+ +   +   D
Sbjct: 41  KNRDPDNLLFKFIETEGQSFSEEKVLLPEAMLSIDKAYSWDEISKWIKRLEKSAMQISLD 100

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
            ++I     PK+DG      ++ G  +Y   RGDG  G D+S        +      N  
Sbjct: 101 LSAIQIKATPKLDGFS---GFDDGSRLY--TRGDGKKGSDISRVFERGLCV-----FNDA 150

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG 242
           E     GE+ I K+ F              +  PRN  + +++     +  +        
Sbjct: 151 ERGLGAGEIVIKKSYFKKYLAHS-------FEYPRNFQASLIKEKALDEQAQK------- 196

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI-RSTLPYDIDG 301
                          +     L  P       +     +V+ ++++ +     + +D+DG
Sbjct: 197 --------------AIIDKAALFIPFIKLPTWSGLVAELVAKFDQIVAQVLVMVDFDVDG 242

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V++     L+ Q+G   +  RW I+ K  + +A  ++L++  Q+GR+G +TPV  LEP 
Sbjct: 243 VVFEAINTDLKTQMGANRKFHRWQIAFKENKDKAHVKVLNVIPQVGRSGKITPVVELEPT 302

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + GA I  AT HN   +K            + + VG  V + R+G VIPK++ ++    
Sbjct: 303 LLSGATIMRATGHNYGLVK-----------EQGLGVGSVVELTRSGLVIPKIIFVLKP-- 349

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                P   P  CP C   +V   +           C     C AQ + ++ +F    A 
Sbjct: 350 ----MPVDIPDNCPSCDKPLVWKSD--------FLTCINHKNCPAQIIGKMAYFFKILAN 397

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           N +G G   ++  +     A  IR  + I+ L      +       +GFG+ +  NL + 
Sbjct: 398 N-DGFGIATIEKLY-----AHDIRSVSQIYALNIEDLVT-------IGFGEKTSMNLINQ 444

Query: 542 INK--RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           +N+     +   RF+ + G+  +G     +L K +     F   +  I            
Sbjct: 445 LNRSVSEQVEDWRFLAAFGMHRMGLGNCENLLKSHHLNDIFDLNLKEIA----------- 493

Query: 600 RVPLVGDIIAQAIVEFY---QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            +    ++  Q IV+      +  N    +      +  + +  + ++ E+ +KK+VFTG
Sbjct: 494 NIDGFAELTGQIIVQGLISIADEFN-HIYQYGFNLETTILTKDLQTLTHELFDKKIVFTG 552

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
            +    R   +++   +G  VS  +S K D +++GD  G  K++ A++ GV +M E  +L
Sbjct: 553 KMNH-SRDDMKKHAKSIGIKVSTSISAKIDYLVIGDKVGQKKIKDAEKFGVVVMTETDYL 611

Query: 716 FLL 718
             +
Sbjct: 612 SKI 614


>gi|145627933|ref|ZP_01783734.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21]
 gi|145640788|ref|ZP_01796371.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|144979708|gb|EDJ89367.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21]
 gi|145274714|gb|EDK14577.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21]
          Length = 278

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 141/281 (50%), Gaps = 7/281 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
               Y  LQ ++ +G PVN  +R  N    ++ + +     
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFLSRYSKQ 277


>gi|317050124|ref|YP_004117772.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b]
 gi|316951741|gb|ADU71216.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b]
          Length = 589

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 119/632 (18%), Positives = 224/632 (35%), Gaps = 95/632 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A +E++ L  ++ + DD YY+     + D++YD+L +R     H F      
Sbjct: 22  CPNWSPIRAGQEIAQLTTQLRHWDDAYYRQGLNPVSDADYDSLSQRLQQWQHCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                P          +     H +    + K+ +   + +++      W          
Sbjct: 76  ----TPDQSAYAAQPTTDGSTHHPVAHTGVRKLRDKRAVMEWMQGKADLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  IT+ Y +G       RGDG  GE+  A    IP IP+ ++    E++ ++
Sbjct: 122 -VQPKVDGVAITLVYRQGHLASMLSRGDGWRGEEWRAKASLIPAIPQQIATTQDEVV-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++   D      +    G K   N R   +G + R + T +   L  F+        
Sbjct: 180 GELFLQMTDH-----QQAQDGGK---NARAQVAGAMMRRDDTPLLAQLGVFIWAWPDGPV 231

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF        + N    + S+ +        LP+  DG+V    
Sbjct: 232 AL----SERLAQLSRWGFGLTARWSERVNNEDEVASWRDRWFQ--GKLPFVTDGIVIHQS 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                +    +     W  + K+   + S+ +  +   IGRTG +  V  L PV +    
Sbjct: 286 PVRRGRDW--QPGQGEWSAAWKYQPAEVSSEVRSVAFNIGRTGKIAVVLNLIPVQLDDKT 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425
           +    + +    + L           D+  GD+V +  AG+ IP+V  +I    +R    
Sbjct: 344 VRRVNIGSLRRWREL-----------DVIAGDQVTLALAGQGIPRVERVIWRVAQRDY-- 390

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                                P++         T    C AQ L RL     +   +I G
Sbjct: 391 ------------------PDAPQSDDFNQLSCLTFSPPCRAQFLSRLSWLSEKSVLDISG 432

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           + +        S            I  L      +  +I  + G        ++   N+ 
Sbjct: 433 IQRSTWQRLLDSGT----------ISHLFSWLALTPEQIAQVAGISPARAQQIWHRFNQT 482

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R   L R++ +LG+      I R+  +     Q    ++ ++         S  ++P +G
Sbjct: 483 RQQPLRRWVMALGLP-----IPRAALQAMPDSQWQQLQLRSV--------ESWQQLPGIG 529

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
             +AQ IV    + +    +  L ++  P+  
Sbjct: 530 GTLAQRIVTMLHDHQVQQLITFLQQQAIPAGA 561


>gi|262045607|ref|ZP_06018626.1| NAD-dependent DNA ligase adenylation domain protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037033|gb|EEW38285.1| NAD-dependent DNA ligase adenylation domain protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 564

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 114/629 (18%), Positives = 229/629 (36%), Gaps = 92/629 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  + R+E S L Q+I    + Y++     + D  YD L  R       FP     
Sbjct: 27  CPDWPPARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPE 86

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +D   P                H +    + K+ + + + +++      W          
Sbjct: 87  DDDLPPPT----------GDARHPVAHTGVRKLADEDSVARWMKNKSDLW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y +G+ V A  RGDG  GE  +A  R IP + +V++  + + + ++
Sbjct: 127 -IQPKVDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELADSV-LQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ ++  +    +  A G     N R   +G++ R +       L+ F+        
Sbjct: 185 GELFLRRDGHV----QQQAGG----MNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPS 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              + Q    + +   GF  +       +    +  +       RS LP+  DG++ +  
Sbjct: 237 DMRRRQ----KLLAQAGFKYSGQYTHPVSRIEQVAQWRQRW--YRSPLPFVSDGVIVREG 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                +          W+ + K+       ++  I    GR+G L  VA LE   +    
Sbjct: 291 REPPGRVW--SPGKGEWLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEAQRLDDKR 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    + L           DI VGD++ +  AG+ IP+V  ++   R  +   
Sbjct: 349 VQRVNVGSVSRWQML-----------DIGVGDQLQISLAGQGIPRVDAVVW--RTAERHK 395

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                              P   K  A         CS Q L RL    S+ A +++G+G
Sbjct: 396 -----------------PTPPPAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGVG 438

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       +             IF+       +  +++ + G       +L+   +  R 
Sbjct: 439 ENLWRVIQQQNPMTH-------IFSWLA---LTVEQLQAVPGISAARGQHLWHQFDLVRK 488

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI      +A+  ++ +            ++A  ++       +P VG+I
Sbjct: 489 RPFIRWVLAMGIPVPQGALAQLESENWH-----------LLAAKSEA--QWRTLPGVGEI 535

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            A+ +V F  +P  +   + L  +  P  
Sbjct: 536 RARQLVAFLHHPDVVALAQWLSGQRIPGF 564


>gi|260599943|ref|YP_003212514.1| NAD-dependent DNA ligase LigB [Cronobacter turicensis z3032]
 gi|260219120|emb|CBA34475.1| DNA ligase B [Cronobacter turicensis z3032]
          Length = 550

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 118/620 (19%), Positives = 233/620 (37%), Gaps = 94/620 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               + EQAR+E+++LE +++  D+ Y+   +  + D+ YD +++R +     F     S
Sbjct: 10  CPGWTSEQARQEVAALESQLARWDEAYWLRGENNVSDAVYDGMRQRLNVWKTCFSLATVS 69

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P            ++  +  H +    ++K+ +   L +++      W          
Sbjct: 70  AAP----------PPVAAGRTHHPVAHTGVQKLKDAASLSQWMHGKTDLW---------- 109

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +++ Y KG+      RGDG  GED +A  R IP IP  +   + + + ++
Sbjct: 110 -VQPKVDGVAVSLVYRKGELRQVISRGDGLQGEDWTARARHIPAIPLQVKGELADSV-LQ 167

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +       D           N R   +G + R   + +   L+ F+       +
Sbjct: 168 GELFLRREGHHQQQD--------GGINARAQVAGAMMRNTASPLLNDLDLFIWAWPDGPK 219

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                    L  +   GFP+     Q  +    V+ + + +  R  LP+  DG+V +   
Sbjct: 220 EMET----RLTILAQGGFPLARAWSQPVSSVADVTRWRK-QWFREPLPFVTDGVVIREAR 274

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               K    R     W+ + K+   +  T +  +   +GRTG ++ VA+LEP+ +    +
Sbjct: 275 EPPGKSW--RPGEGSWVAAWKYPPVKQVTEVNALRFAVGRTGKISVVAQLEPITLDDKQV 332

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQ 426
           +  ++ +    + L           D+  GD V V  AG+ IP++  ++    +R   A 
Sbjct: 333 SKVSIGSLTRWEKL-----------DLAEGDEVEVSLAGQGIPRLDAVVWRPAKRSKPA- 380

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
                               P   +  A        AC  Q + RL     +  F++ G+
Sbjct: 381 --------------------PPAARFDALSCLFATGACEEQFISRLVWLSGKPVFDLAGM 420

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+                        L      S   ++   GF     T L+   N  R
Sbjct: 421 GEATWRQLSSRHR----------FEHLFSWLALSVDALKQTPGFSAPRATRLWHQFNLTR 470

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            +  +R++ +LG+                ++Q  A +  + +     D  S   +P VG 
Sbjct: 471 QLPFQRWVKALGLPLPA-----------RAWQALADDTWHQLQMR--DERSWQTLPGVGA 517

Query: 607 IIAQAIVEFYQNPRNICAVE 626
             A+ +V +  +P      +
Sbjct: 518 ERARQLVNYIHHPDVAALAQ 537


>gi|254479199|ref|ZP_05092546.1| NAD-dependent DNA ligase adenylation domain subfamily
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034862|gb|EEB75589.1| NAD-dependent DNA ligase adenylation domain subfamily
           [Carboxydibrachium pacificum DSM 12653]
          Length = 271

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 140/269 (52%), Gaps = 11/269 (4%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E +  E+ARK +  L ++I+YH+  YY   +P I D EYD L R    +   +P+    +
Sbjct: 13  EFMDREEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---K 69

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GGE        TH +P LSL   +  E+++ F  R+           + + 
Sbjct: 70  TPDSPSQRVGGEPLDEFEPFTHIVPMLSLANAFTAEEIKDFDRRVKE-----AVGEVEYV 124

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +EPKIDG  + + YE G F   + RGDG  GE+V+  ++ I +IP  L  ++   + VRG
Sbjct: 125 VEPKIDGLSVELVYENGIFTVGSTRGDGIVGENVTPNLKTIKSIPLRLKDSV--NLVVRG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV++ K  F  LN+E    G   +ANPRNAA+G +R+L+P     R L+ F+  L +   
Sbjct: 183 EVFMPKASFAKLNEERAERGESLFANPRNAAAGSVRQLDPKVTAKRDLDIFIFNLQRIEG 242

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANT 277
              K   E L+ ++  GF V   +++  T
Sbjct: 243 RDFKTHVEALEFLKEQGFKVIPFIKKCTT 271


>gi|238789535|ref|ZP_04633319.1| DNA ligase B [Yersinia frederiksenii ATCC 33641]
 gi|238722288|gb|EEQ13944.1| DNA ligase B [Yersinia frederiksenii ATCC 33641]
          Length = 565

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 111/633 (17%), Positives = 230/633 (36%), Gaps = 95/633 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               +  +   E++ L+Q++S  D  Y+Q    ++ D+ YD L+ +              
Sbjct: 27  CPEWTESRISNEINLLDQQLSKWDIAYHQQGVSLLDDNVYDQLQDKLRGWREC------R 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+   N+    +     K  H +    L+K+ N   L  +++     W          
Sbjct: 81  GLPDKTNNR----LIPGNGKRLHPVAHTGLKKLKNEMALTNWMSGRKNLW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK      RG+G  G+        I  IP+ +++  P ++ ++
Sbjct: 127 -VQPKVDGVAVTLVYQAGKLTQLLSRGNGLKGQSWIDKAPFISAIPQYIAMAPP-LLTLQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++                +    N R + +G L R + + +   L  F+        
Sbjct: 185 GELFLQMEGHQQ--------AQSGGVNARTSVAGALMRKSASPLLAKLGIFIWAWPDG-- 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              +   E    ++ +GFP+     +   +   ++ +       R+ LP+  DG+V + +
Sbjct: 235 --PRNMVERTTLLQIMGFPLAAQYSKSVTSSKDVIQWREHW--YRAPLPFVTDGVVIRQE 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E    +    R+ S  W ++ K+   Q  T + DI   +GRTG +T V ++ PV I    
Sbjct: 291 EEPAGRYW--RSASGNWSVAWKYPPIQQLTEIQDIHFTVGRTGKITVVLQVSPVKIDDKW 348

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I    + +    +             +I  GD+V +  AG+ IP++  ++   R      
Sbjct: 349 IRRVNIGSMARWR-----------QWNITSGDQVTIALAGQGIPRLDKVVW--RVDQRHE 395

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F+ P      Q    R                  L C  Q + RL      +  +++ +G
Sbjct: 396 FNPPMADRFHQLSCFRLP---------------PLECEQQLIARLTWLSGPNGLDMQSIG 440

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +    F++       I       +L   Q  +      + G G V    ++      R 
Sbjct: 441 SK----FWQEIVHHGLINNMVGWLSLTAEQIAA------VPGVGPVRAEKIHQQFQLTRK 490

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               +++ +LG               +        + +++   +  +W     +P +G +
Sbjct: 491 KPFSQWLPALG---------------FPQGMPVGTQWHSLQQRSIAEWRL---IPGIGLV 532

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
            A+ +  F  +P      + L ++        E
Sbjct: 533 RAKQMSNFLHHPEVQAQADFLSQQGIAGFRPEE 565


>gi|288550204|ref|ZP_05969603.2| hypothetical protein ENTCAN_08224 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316113|gb|EFC55051.1| NAD-dependent DNA ligase adenylation domain protein [Enterobacter
           cancerogenus ATCC 35316]
          Length = 548

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 128/618 (20%), Positives = 224/618 (36%), Gaps = 95/618 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A KE+++L  +    D+ Y++     + D  YD L  R       F + A +
Sbjct: 12  CPVWSQGKAEKEIAALSAQKIRWDEAYWKEGTSEVSDEIYDQLTARLAQWQRCFSN-APA 70

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           E P   L             V H I    ++K+ + E LR+++      W          
Sbjct: 71  ESPLPALK----------GTVKHPIAHTGVQKVASKEALRQWMYARRDLW---------- 110

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  G    A  RGDG  GED +A +RA+P +P+  +        ++
Sbjct: 111 -VQPKVDGVAVTLVYRNGTLSQAVSRGDGVKGEDWTAQVRAMPLVPQS-TEGALANSVLQ 168

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ ++     N     +G     N R   +G + R     + + +  F+        
Sbjct: 169 GELFLLRD-----NHIQQQMGGM---NARAKVAGAMMRHADASLLKQIGVFIWAWPDG-- 218

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              K   + L ++   GF +         +   +        +  S LP+  DG+V +  
Sbjct: 219 --PKAMQQHLTQLSQSGFDLTARYTLPVQSADEVEKQRAHWFT--SPLPFVTDGVVVRSA 274

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                 +         W+I+ K+        + DI   +GRTG ++ VA L PV +    
Sbjct: 275 AEPAGDRW--LPGEGNWVIAWKYTPVSQVADVRDIQFAVGRTGKISVVALLAPVQLDDKR 332

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +   +L + D  + L           DI  GD +L+  AG+ IP+   +I          
Sbjct: 333 VQRVSLGSVDRWQRL-----------DIAPGDHILISLAGQGIPRFEKVIWR-------- 373

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT-GGLACSAQQLERLKHFVSRDAFNIEGL 486
                        V R           +  C      C  Q   RL    S    +++GL
Sbjct: 374 ------------GVERQKPRPPASQFHSLTCFYASPECMDQFFSRLTWLSSTQGLDVKGL 421

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+      +++            IF+  R  Q    +I++  GF       L+   N  R
Sbjct: 422 GEAGWRALYQA-------HHFEHIFSWLRLNQA---QIQSTPGFSAARGVALWHRFNLIR 471

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                R+I ++GI       A   A    S+Q        + +   ++W     +P  G 
Sbjct: 472 EQPFIRWITAMGIP---VTKATLNAAGDTSWQ-------AMRSRRAEEWQH---LPGTGK 518

Query: 607 IIAQAIVEFYQNPRNICA 624
             A  IVE+  +P+    
Sbjct: 519 EKALQIVEWLHHPQVEAL 536


>gi|330859974|emb|CBX70302.1| DNA ligase B [Yersinia enterocolitica W22703]
          Length = 527

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 113/618 (18%), Positives = 216/618 (34%), Gaps = 95/618 (15%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+++   +  Y+Q     I D  YD L+ +                P+    +      
Sbjct: 4   LEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWRLC------LGLPDKTDIR----PI 53

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               K+ H +    L+K+ +   L  ++T     W           ++PKIDG  +T+ Y
Sbjct: 54  PGNGKMLHPVAHTGLKKLKDEAALISWMTGRKDLW-----------VQPKIDGVAVTLVY 102

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           + GK      RG+G  G++ +     I  IP+ ++ + P ++ ++GEV++          
Sbjct: 103 QAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIA-SAPPLLTLQGEVFLQMEGHQQ--- 158

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                 +   AN R + +G L R + + +   L  F+           K   E  + ++ 
Sbjct: 159 -----AQSGGANARASVAGALMRKSVSPLLAKLGIFIWAWPDG----PKSMVEKSRLLQE 209

Query: 264 LGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
           +GFP+         +   +  + +    +   LP+  DG+V + +     +    +A   
Sbjct: 210 MGFPLTAHYSEPVISSSDVAQWRDRWFKM--PLPFVTDGVVIRQENVPAGRYW--QATPG 265

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
            W ++ K+   Q  T + DI   +GRTG +T + ++ PV I    I    + +    +  
Sbjct: 266 NWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKIDDKWIRRVNIGSIARWRL- 324

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                      DI  GD+V +  AG+ IP++  +I   R    Q    P      Q    
Sbjct: 325 ----------WDIVPGDQVTISLAGQGIPRLDKVIW--RVSQRQEIVPPDADKFHQLTCF 372

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           R L                  C  Q L RL      +  +++ +G               
Sbjct: 373 RRL---------------PFECEPQFLSRLAWLSGTNGLDMQSVGNGLWRELI----HHG 413

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            I    D  +L      S  +I  + G G      +Y    + R     +++ +LG    
Sbjct: 414 FINGLLDWLSL------SVEQIAAVPGIGQGRAEKIYQQFQRARQQPFSQWLQALG---- 463

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
                      +          +++      +W  +   P +G + A+ I  F  +P   
Sbjct: 464 -----------FPQGIPLDSSWHSLRQRGIAEWRLM---PGIGQVRAKQINHFLHHPEVQ 509

Query: 623 CAVEALLKEVSPSIGRHE 640
              + L ++        E
Sbjct: 510 MMADFLSQQGIAGFSPEE 527


>gi|238759846|ref|ZP_04621002.1| DNA ligase B [Yersinia aldovae ATCC 35236]
 gi|238701907|gb|EEP94468.1| DNA ligase B [Yersinia aldovae ATCC 35236]
          Length = 532

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 109/603 (18%), Positives = 212/603 (35%), Gaps = 92/603 (15%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+  L +++   D  Y+Q     I D  YD L  +          L   +  N       
Sbjct: 4   EIKELTKQLGKWDIAYHQQGHSPIADDAYDQLVAKLHQWQLCH--LPHGKQENK------ 55

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +  L   + +H +    L+K+ +   L  ++      W           ++PK+DG  +
Sbjct: 56  -QPILGNGQFSHPVAHTGLKKLKDEATLVSWMKGRKNLW-----------VQPKVDGVAV 103

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y  G+      RG+G  G++ +     I  IP+ + +  P ++ ++GE+++      
Sbjct: 104 SLVYVNGELTQLISRGNGLKGQNWTDKATFISAIPQFI-VAAPPLLTLQGELFLKMEGHQ 162

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
                     +    N R + +G L R +P+ +   L   +           K   E  +
Sbjct: 163 Q--------AQSGGVNARASVAGALMRKSPSLLLPQLGILIWAWPDG----PKSIVEKGK 210

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +R +GFP+     ++ T    V+ + +    +S LP+  DG+V + +E    +      
Sbjct: 211 LLRIMGFPLTAEYSKSVTSSMDVTRWRQF-WFKSPLPFVTDGIVIRQEEEPAGRYWQATP 269

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
               W ++ K+  +Q  T + +I   IGRTG  + V ++ P+ I    +    +      
Sbjct: 270 GP--WSVAWKYPPQQQVTEVENIHFTIGRTGRSSVVLQVSPIKIDDKWVRRVNVGTIARW 327

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           K            RDI +GD+V +  AG+ IP++ ++I   R         P +  + Q 
Sbjct: 328 K-----------QRDITLGDQVTIALAGQGIPRLENVIW--RATQRDSVVPPDWHQLHQW 374

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
              R                   AC AQ L RL         +I+ +         +   
Sbjct: 375 SCFR---------------PLPQACEAQFLSRLIWLSGPQGLDIKNVSGGLWQPLIQQ-- 417

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +       +L       T +I  + G G      +Y    + R      ++ +LG 
Sbjct: 418 --GLVNDLVGWLSLT------TEQIAGVPGIGHKRAEKIYQQFQQTRQKPFSDWLQALGF 469

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
              G    +                  ++  +  +W S+     +G   A+ I  F  + 
Sbjct: 470 PLKGLNETQ---------------WQILLERSMAEWTSMA---GIGQARAKQIKHFLHHH 511

Query: 620 RNI 622
              
Sbjct: 512 EVQ 514


>gi|167036006|ref|YP_001671237.1| NAD-dependent DNA ligase LigB [Pseudomonas putida GB-1]
 gi|189046591|sp|B0KLZ2|LIGB_PSEPG RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|166862494|gb|ABZ00902.1| DNA ligase (NAD(+)) [Pseudomonas putida GB-1]
          Length = 566

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 128/638 (20%), Positives = 243/638 (38%), Gaps = 95/638 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               + ++A  E + L+  ++  D+ Y++    ++ D  YD  ++R   +   F  LA S
Sbjct: 23  CPDWTPQKAEAEAAQLQATLTGWDEHYHRQGIALVADELYDQSRQRLVHLQQCFG-LAPS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P          +  +   + H +P   ++K+ + + + +++      W          
Sbjct: 82  PSP----------LTSARGPLPHPVPHTGVDKLADRQAVARWMAGKTGVW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK DG   ++ Y +G+ V    RGDG  G D S  I  +  + R L   I   + ++
Sbjct: 122 -VQPKFDGVAASLIYRQGQLVQLISRGDGLQGHDWSRHIPQLGAVTRQLPQAI--DLHLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+Y+       LN+ + A      AN R   +G+L R   T +    +  FV G     
Sbjct: 179 GELYLR------LNEHVQAKAGS--ANARGTVAGLLARKQLTREQGNTIGLFVWGWPHGP 230

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E     Q + L ++  LGFP +     A       + + E    RS LP+  DG++ ++ 
Sbjct: 231 ER----QADRLAQLAQLGFPDSQHYSIAVDTLEDAARWREH-WYRSPLPFASDGVILRLG 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                ++   +A++P W+ + K+   QA   + D+  ++GRTG +TP+A ++PV +    
Sbjct: 286 SRPPAERW--QAKAPYWIAAWKYPYVQALAEVRDVRFRVGRTGRITPIAHVQPVTLDDRR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           IT  +L +    + L           DIR GD+V +  AG  IP++  ++   R  + QP
Sbjct: 344 ITQVSLGSLARWQAL-----------DIRPGDQVAISLAGLTIPRLEHVV--HRAVERQP 390

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P                  G+  A         C  Q + RL     +    +   G
Sbjct: 391 LGAP----------------APGRHHALSCWQPSEGCEEQFIARLTWLSGKQGLALPRTG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                        A  +    D   L         +++ + G   ++   L  S ++ R+
Sbjct: 435 PGTWRRLVD----AGLVTSMTDWLQLDA------ERLQQVPGISSLTAAQLLGSFDQARS 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              ++++  LG           + K+ L      QE+ +  A           VP +G  
Sbjct: 485 RPFDQWLRGLGAP---------IGKH-LQLTGGWQEMASRSAG------QWQTVPDIGVK 528

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
            ++ +V F+           L +          + +  
Sbjct: 529 RSRQLVGFFAAAEVQAIATRLAESGIEGFSPPPERIEQ 566


>gi|332755050|gb|EGJ85415.1| DNA ligase domain protein [Shigella flexneri 4343-70]
          Length = 256

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 133/257 (51%), Gaps = 8/257 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L   NIP  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFP 267
                  L + +  G  
Sbjct: 236 PDTHLGRLLQFKKWGCR 252


>gi|302844550|ref|XP_002953815.1| hypothetical protein VOLCADRAFT_118457 [Volvox carteri f.
           nagariensis]
 gi|300260923|gb|EFJ45139.1| hypothetical protein VOLCADRAFT_118457 [Volvox carteri f.
           nagariensis]
          Length = 1842

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 138/546 (25%), Positives = 212/546 (38%), Gaps = 136/546 (24%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++L  LE  +S+H+D YY   +  I D+ YD LK +   +A     L            +
Sbjct: 89  QQLRQLESALSHHNDLYYNQQRTEISDAAYDTLKLQYRQLAAQ---LRGELPLEELELPV 145

Query: 79  GGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-------------- 122
           G     +  L KV H +  LSL  + + E+   ++ +     Q                 
Sbjct: 146 GAPPPASGGLRKVPHRVAMLSLAAVNSREEAETWLDKTLAKLQADAGGGGGNDAGGGGGA 205

Query: 123 --------------------------------------DNSIFFTLEPKIDGTMITIRYE 144
                                                   S  + +EPK+DG  + + Y 
Sbjct: 206 GMVRGGGGGGGGGGQKGVQKKKATKKSKTGADVPASSVGRSYRWVMEPKVDGLAVRVLYG 265

Query: 145 KG-----KFVYAALRGDGH--SGEDVSACIRAIPTIPRVLSLN----------------- 180
           +          AA RGDG    G  ++A I   P        +                 
Sbjct: 266 RTAHGTYILKEAATRGDGWLGRGSHIAASISPSPAGAANHDGDGNEWENGSAASAPAADC 325

Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNF 238
             PE +E RGEV+    D   +N E  AVG+ P+AN RNAASG +R L+P +  R  L+F
Sbjct: 326 GAPEWVEARGEVFCRTADLELVNREQEAVGQPPFANTRNAASGAVRLLDPAECRRRRLSF 385

Query: 239 FVH-------------------------------------------GLGKTSEIFAKGQY 255
             +                                           G     +     Q+
Sbjct: 386 VAYAALAPSPPPSPSQQRRPEPATTTPPPSSSSPPPYPSSPSNRSSGNAAAVQPLHPSQW 445

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + LQ ++  GF V+   R  ++   ++    E    R+TL YD DG V K+D+ +L   L
Sbjct: 446 DTLQWLKSAGFSVSPDNRLCDSREEVLGAVEEWMEKRATLGYDADGAVIKLDDTTLYDIL 505

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G     PRW ++ KF  ++A TR+  +++ +GR G +TPVA L PV +GG  I  A+LHN
Sbjct: 506 GTAGSDPRWAVAWKFPGEEAVTRVTGVELTVGRQGQITPVALLSPVVVGGVTIRRASLHN 565

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
               + L               GD V+V+R+G+VIP+VV ++   R P A+ +  PS CP
Sbjct: 566 LGLARALGLHL----------PGDAVVVRRSGDVIPQVVRVLPELRPPGAELWQPPSACP 615

Query: 436 ICQSRV 441
            C   +
Sbjct: 616 ACGGPL 621



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 24/181 (13%)

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR-- 515
           C     C+A+   R+ HF      +  G+ +  +    +           +D + L    
Sbjct: 711 CDNP-NCAAKSERRMLHFAQ-VCLSGSGVSRGVVGQLLE---VGLLDGDISDWYKLDEAS 765

Query: 516 ---------RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
                     +      +  + GFG      L  S+   R++S    +  L I  VG   
Sbjct: 766 VGECSGLGVGRLGGRASLSALPGFGPARTAALMSSLESSRHMSPGTLLRGLNIPRVGEVA 825

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A +L + + S          ++A        +     V   +A+ +  ++Q P N   + 
Sbjct: 826 AEALGRAFPSL--------ELLAAEVPYADRIAAAAGVAPSVARNVANWFQQPANQRLLA 877

Query: 627 A 627
            
Sbjct: 878 R 878



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 647  IENKKLVFTGTL-----QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEK 700
            +E  ++  TGTL     + + R++ +  +   GA     + + T +++ G   G  K  K
Sbjct: 977  LEGMRVCVTGTLMGPYGKGLVRNEMRRMLEAAGAEFHLTVKKDTQVLLAGTGAGERKTRK 1036

Query: 701  AQQLGVKIM 709
            A   G+ ++
Sbjct: 1037 AAASGLLVV 1045


>gi|218678588|ref|ZP_03526485.1| NAD-dependent DNA ligase LigA [Rhizobium etli CIAT 894]
          Length = 264

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 114/259 (44%), Positives = 168/259 (64%), Gaps = 4/259 (1%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVRFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++G   +++   V H+ P LSL+  ++ ED++ F+  IYRF  +  D SI F
Sbjct: 68  ---DSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASIYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G+ S
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244

Query: 248 EIFAKGQYEMLQKMRCLGF 266
           ++ A  Q+     ++ LGF
Sbjct: 245 DMPADTQFRHGADLQGLGF 263


>gi|238750790|ref|ZP_04612288.1| DNA ligase B [Yersinia rohdei ATCC 43380]
 gi|238710934|gb|EEQ03154.1| DNA ligase B [Yersinia rohdei ATCC 43380]
          Length = 563

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 116/633 (18%), Positives = 232/633 (36%), Gaps = 95/633 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S ++A  E++ L ++++  D  Y+Q    ++ D  YD L+ +          L   
Sbjct: 25  CPEWSEKRASDEINILVKQLNQLDVAYHQQGISLLDDDIYDQLQDKLHGWREC---LGLP 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +  N         +     K+ H +    L+K+ +   L  +++     W          
Sbjct: 82  DKANN-------TLIPGDGKLLHPVAHTGLKKLKDENALADWMSGREDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ G+ +    RG+G  G + +     I  IP+ +S+  P +  ++
Sbjct: 125 -VQPKVDGVAVTLVYQAGELIQLLSRGNGLKGLNWTDKAPFISAIPQHISMAPPWLT-LQ 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++  +    +        +    N R + +G L R   + +   L  F+       +
Sbjct: 183 GELFLQMDGHQQV--------QSGGVNARASVAGALMRKTMSPLLANLGVFIWAWPDGPK 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E    ++ +GFP+     +  T    V  + +    ++ LP+  DG+V + +E
Sbjct: 235 NLV----EKTTLLQEMGFPLAAKYSKPVTSSQDVMQWRDF-WYQTPLPFVTDGVVIRQEE 289

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +    RA S  W ++ K+   Q +T + DI   IGRTG +T V ++ PV I    I
Sbjct: 290 EPAGRYW--RAASGNWSVAWKYPPLQKTTEIQDIHFTIGRTGKITVVLQVAPVKIDDKQI 347

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN-ERHPDAQP 427
               + +    +             +I VGD+V +  AG+ IP++ +++    +     P
Sbjct: 348 RRVNIGSLALWR-----------QWNIAVGDQVTITLAGQGIPRLENVVWRVSQREYLIP 396

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                F P+   R++                   L C  Q L RL         ++  +G
Sbjct: 397 PEKDKFHPLSCFRLL------------------PLECEPQFLSRLAWLSGPKGLDMRNVG 438

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +     F++       I       +L         +I  + G G V    +Y      R 
Sbjct: 439 RG----FWREIVRHGLINDMVGWLSLTA------EQIATVPGIGRVRAEKIYQQFQNTRL 488

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               +++ +LG    G   +     ++   Q  +                   +  +G +
Sbjct: 489 KPFSQWLPALGFPLGGVVDS-----HWHPLQQRSIA-------------EWRLISGIGAV 530

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
            A+ I  F  +P      + L ++        E
Sbjct: 531 RAKQINHFLSHPEVQEMADFLSQQGIAGFRPEE 563


>gi|212374934|pdb|3BAC|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
           Dependent Dna Ligase
          Length = 270

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 94/265 (35%), Positives = 150/265 (56%), Gaps = 4/265 (1%)

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK+DG  +
Sbjct: 1   AKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPKLDGLAV 59

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           +I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV++    F
Sbjct: 60  SILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGF 119

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQYE 256
             LN   +    K +ANPRNAA+G LR+L+P   + R L    +G+G    +      Y 
Sbjct: 120 ERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVGLPTTHYA 179

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +LQ +LG
Sbjct: 180 RLQWLKSIGIPVNPEIRLCNGADEVLDFYQDIQNKRSSLGYDIDGTVLKINDIALQNELG 239

Query: 317 ERARSPRWMISHKFAEKQASTRLLD 341
             +++PRW I++KF  ++  T L D
Sbjct: 240 FISKAPRWAIAYKFPAQEELTLLND 264


>gi|291086421|ref|ZP_06571502.1| NAD-dependent DNA ligase adenylation domain protein [Citrobacter
           youngae ATCC 29220]
 gi|291068208|gb|EFE06317.1| NAD-dependent DNA ligase adenylation domain protein [Citrobacter
           youngae ATCC 29220]
          Length = 519

 Score =  316 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 106/596 (17%), Positives = 216/596 (36%), Gaps = 94/596 (15%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
             +D Y++     + D  YD L  +       F D + S+    P+N            +
Sbjct: 3   RWNDSYWKQGVSAVDDGVYDQLNAQLTQWQRCFGDDSSSDLSTPPIN----------GTI 52

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H +P   + K+ + + L++++      W           ++PK+DG  +T+ Y  G  V
Sbjct: 53  AHPVPHTGVRKLADKQALQQWMRVRSDLW-----------VQPKVDGVAVTLVYRHGNLV 101

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
            A  RG+G  GED +  +  IP++P   +  +     ++GE+++ +   +          
Sbjct: 102 RAISRGNGLKGEDWTQKVLLIPSVPHT-TKGLLANSTLQGEIFLQQEGHVQQ-------- 152

Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
           ++   N R+  +G++ R +  ++ R L  F+        +      E L ++   GF   
Sbjct: 153 QRGGMNARSKVAGMMMRQSNPELLRSLAIFIWAWPDGPAVM----SERLAQLTAAGFSFA 208

Query: 270 NGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
               QA      +        +  S LP+  DG+V +  +    +          W+ + 
Sbjct: 209 QRYTQAVKNADDVEHARARWWT--SALPFVTDGVVVRSGKEPQARYW--VPGQGDWLAAW 264

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K+      + + DI   +G++G +  VA L PV +    +    + +             
Sbjct: 265 KYPPVAQVSEVTDIQFSVGKSGKIAVVALLAPVMLDDKRVQRVNIGSVRRWN-------- 316

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
                DI  GDR+L+  AG+ IP++ +++                     S       P 
Sbjct: 317 ---EWDIAPGDRILISLAGQGIPRIDEVVWR-------------------STQRTKPKPP 354

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
            G+  +         C  Q + RL    +++   +EG+G+       +    A+      
Sbjct: 355 EGRFNSMTCFYATPECYEQFIARLVWLGAKEVLELEGIGEAGWRELHQ----AYRFEHIF 410

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
               L + Q  ST      LG        ++   N  R++   R++ ++GI       A 
Sbjct: 411 SWLGLTQEQLQST------LGVSK--GEKIWHQFNLSRHLPFTRWVIAMGIPL---TQAT 459

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A    S+Q               D  S  ++P +G+   + ++++ ++      
Sbjct: 460 LNASRDDSWQQLQDR----------DEQSWRQLPSMGERRTRRVIQWLEDREITAL 505


>gi|313618396|gb|EFR90422.1| DNA ligase [Listeria innocua FSL S4-378]
          Length = 303

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 32/326 (9%)

Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
           L+K+AG++IP+V+  I  ER+   +PF  P  CP C S +VR           A RC   
Sbjct: 1   LIKKAGDIIPEVIKSITEERNGSEKPFHMPKNCPTCDSELVRLEEE------VALRCINP 54

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C AQ  E L HFVSR+A NI+GLG++ +   F        I+  AD+F L + +    
Sbjct: 55  -KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSMH----LIKDVADLFFLSKEKLLEL 109

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            ++      G+ SVTNL  SI   +  SLE+ +F LGIRHVGA+ A+SLA ++ +  N  
Sbjct: 110 ERM------GEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKSLAVHFETMDNLK 163

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---- 637
                       D  +L  +  +G+ +A +IV ++ N      +E L +           
Sbjct: 164 IA----------DKETLTSINDIGEKMADSIVTYFANEEVHDLLEELKRAGVNMTYTGPK 213

Query: 638 -RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
             +          K +V TG L+K+ R+ A+  +  LG  VS  +S+KTD+++ G + GS
Sbjct: 214 LENMSEEELVFAGKTVVLTGKLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGS 273

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYN 722
           KL KA++L + I +EE  +  L    
Sbjct: 274 KLAKAEELAIPIWSEEDLIEYLPDEG 299


>gi|304399036|ref|ZP_07380905.1| DNA ligase (NAD(+)) [Pantoea sp. aB]
 gi|304353496|gb|EFM17874.1| DNA ligase (NAD(+)) [Pantoea sp. aB]
          Length = 583

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 118/627 (18%), Positives = 223/627 (35%), Gaps = 89/627 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               +  +A +E+  L+Q++ + DD YY+  +  + D++YDAL++R     H F     +
Sbjct: 25  CPVWTPVRATEEIGRLQQQLQHWDDAYYRQGQSPVTDTDYDALQQRLVTWQHCFSASQPT 84

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P  P             +  H I    ++K+ +   L  ++      W          
Sbjct: 85  YSPQLP----------GKGEHLHPIAHTGVKKMRDKLALAYWMQGRRDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +++ Y  G+ V    RGDG  GE+  A    IP IP  +   + E++ ++
Sbjct: 125 -VQPKVDGIAVSLVYRHGRLVSLLSRGDGLRGEEWLAKAAWIPAIPLHIETPLDEVV-LQ 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++       +N    A+      N R+  +G +     T +   L  F+        
Sbjct: 183 GELFL------LMNGHQQAIDG--GKNARSLVAGAMMSRQRTPLLDSLGVFIWAWPDG-- 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E  +++   G  +             V+ + E +   + LP+  DG+V     
Sbjct: 233 --PATMTERHEQLSRWGLGIAAEWSHNVKDEEDVAIWRE-RWFHAALPFVTDGVVVHQSL 289

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               K          W ++ K+   + S  +L +D  IGRTG +  V  L+PV +    +
Sbjct: 290 RPAGKNW--LPGEGIWAVAWKYQPPEVSAEVLSVDFLIGRTGKIAAVLNLQPVQLDDKTV 347

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               + +    +             DI  GD V +  AG+ IP++  +I        + +
Sbjct: 348 RRVNVGSLRRWQ-----------ESDIVAGDVVTLSLAGQGIPRLERVIWR---VAERHY 393

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P               P+  +       T    C  Q L +L+    +   NI G+ +
Sbjct: 394 PQP---------------PEASRYTPLSCYTFSAECQKQLLAKLRWLSQKTVLNIPGVER 438

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                  +S              TL   Q  + T               L+   N  R  
Sbjct: 439 STWLRLLESGSMTHLF----GWLTLTPEQIAAAT------ALSPERAEQLWHRFNLARQQ 488

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R++ +LG+      +     + + S                 D ++   +P VG  +
Sbjct: 489 PFRRWVKALGVSLPQKALNALPDQQWESIMRR-------------DVMAWQTLPGVGAGL 535

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS 635
           A  + E +Q+ R    +  L ++  P+
Sbjct: 536 ATRLAEQFQDARLQALIAFLQQQGIPA 562


>gi|324019686|gb|EGB88905.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 117-3]
          Length = 450

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 186/495 (37%), Gaps = 76/495 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-V 306
           +      + L+++   GF       R       +    NE     + LP+  DG+V +  
Sbjct: 231 LM----TDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGA 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L PV +   
Sbjct: 285 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDK 341

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 342 KVQRVNIGSVRRWE-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                 P   +  +         C  Q + RL    S+    ++
Sbjct: 390 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLD 429

Query: 485 GLGKQQLDFFFKSED 499
           G+G+       ++  
Sbjct: 430 GIGEAGWRALHQTHR 444


>gi|148244425|ref|YP_001219119.1| DNA ligase (NAD+) [Candidatus Vesicomyosocius okutanii HA]
 gi|166216276|sp|A5CXB8|DNLJ_VESOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146326252|dbj|BAF61395.1| DNA ligase (NAD+) [Candidatus Vesicomyosocius okutanii HA]
          Length = 632

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 149/693 (21%), Positives = 283/693 (40%), Gaps = 108/693 (15%)

Query: 36  YQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL--FKVTHSI 93
           Y+  KPII + +YD +      +        ++++PN PL K       +    KV    
Sbjct: 36  YRSGKPIISNEDYDFIY--LATL--------KNKEPNNPLFKSIEPEGRAFAEEKVLLPE 85

Query: 94  PTLSLEKIWNIEDLRKFITRIYR--FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
             LS++K ++  ++ K+I R+ +       D N+I     PK+DG      ++ G  +Y 
Sbjct: 86  LMLSIDKAYSWNEMSKWIERLEKSGMLIGLDLNAIQIKATPKLDGFA---GFDDGNRLY- 141

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211
             RGDG  G D+S   +    +               GE+ + K+ F             
Sbjct: 142 -TRGDGKKGSDISRVFKRGLCV-----FKDSGRGLGAGEIVVKKSYFEKYLVHS------ 189

Query: 212 PYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
            +  PRN  S +++     +  +                       +     L  P    
Sbjct: 190 -FEYPRNFQSSLIKEKALDEQAQK---------------------AIIDKGALFVPFIKL 227

Query: 272 VRQANTFHGIVSYYNEMKSI-RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
              + +   +V+ + E+ S     + +D+DG+V++V    L+ Q+G   +  RW I+ K 
Sbjct: 228 PIWSGSMTELVAKFEEIVSQVLVMVDFDVDGVVFEVINIDLKTQMGANRKFHRWQIAFKE 287

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
            +     ++L++  Q+GR+G +TPVA +EP  + GA I   T H+   +K          
Sbjct: 288 NKDIVQVKVLNVMPQVGRSGKITPVAEVEPTLLSGATIVRVTGHHYGLVK---------- 337

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
             + + +G  V + R+G VIPK++ ++         P   P  C  C   +V + +    
Sbjct: 338 -EQGLGIGSVVELTRSGLVIPKIISVLKP------MPVDIPDNCLSCGMPLVWESDFLV- 389

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
                  C     C AQ + R+ +F    A N +G G   ++  +     A +IR  + I
Sbjct: 390 -------CVNHKNCPAQIIGRITYFFKVLANN-DGFGIATVEKLY-----AHNIRSVSQI 436

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR--NISLERFIFSLGIRHVGAEIAR 568
           +TL   +  +       +GFG+ +  NL   +++     I   RF+ + G+  +G     
Sbjct: 437 YTLNVERLMA-------IGFGEKTSINLISQLSRSISEKIEDWRFLAAFGMHRMGLGNCE 489

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRNICAVEA 627
           +L K Y     F   +  I             +    ++ AQ IV+           +  
Sbjct: 490 NLLKSYRLNDIFDLTLEQI-----------TNIDGFAELTAQVIVQGLVSIVDEYNQIYQ 538

Query: 628 LLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
               +  ++   + + +  E+ +K++VFTG +    R++ +++   +G  VS  +S K D
Sbjct: 539 YNFNLDTTVFTKDLQTLMHELFDKRIVFTGKM-NCPRNEMKKHAKLVGIKVSTTISTKID 597

Query: 687 IIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            +++G   G  K++ A++LGV +M E  +L  +
Sbjct: 598 YLVIGSRVGQKKIQNAEKLGVVVMTEADYLSKI 630


>gi|289669579|ref|ZP_06490654.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 511

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 135/525 (25%), Positives = 220/525 (41%), Gaps = 155/525 (29%)

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            T +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN D I  L           D+
Sbjct: 1   MTVVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARL-----------DV 49

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ CP+C S +VR+         A 
Sbjct: 50  RVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVREEGQ------AV 103

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE-------------DPAF 502
            RC+G L C AQ+ E  +HFVSR A +++GLG++ ++    S              D   
Sbjct: 104 WRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVQGVADIYLLTVDQLL 163

Query: 503 SIRIP-----ADIFTLQRRQQTSTTKIENIL----------------------------- 528
            +R+         F  + R+  ++     +                              
Sbjct: 164 QLRMISTAESPHAFLREAREHLASGAYAQLETTVVGIGVDMAGEREVPPTWQADLLRAGL 223

Query: 529 --------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK-------- 572
                           NL ++I   R+ +LERF+F+LGI HVG   A++L+         
Sbjct: 224 PKFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFGDLELI 283

Query: 573 -----------------------YYLSYQNFAQEINNII------------------AHN 591
                                  ++L      Q I++++                  A +
Sbjct: 284 RHLPWPLFKRVPDIGGEVARALGHFLDQPGNQQAIDDLLQRGVRIGDTHPPSPKLREALS 343

Query: 592 NDDWLSLIRVPLVGDIIAQ-------------------------------AIVEFYQNPR 620
               L  + +P V  + AQ                               A++++   P 
Sbjct: 344 FASVLEDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVVAALLQWLDRPE 403

Query: 621 NICAVEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           N     A    ++ V   +   +   +  ++ + +V TGTL  + R  A++ +  LGA V
Sbjct: 404 NAALASAAQQAMETVLARLPEADALQTGPLDGQSVVITGTLAALTRDAAKQRLEALGAKV 463

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  +S+KT  ++ G+  GSKL+KAQ LGV I +E + L  L ++ 
Sbjct: 464 AGSVSKKTAFLVAGEEAGSKLDKAQSLGVDIWDEARLLAFLSEHG 508


>gi|238755583|ref|ZP_04616920.1| DNA ligase B [Yersinia ruckeri ATCC 29473]
 gi|238706183|gb|EEP98563.1| DNA ligase B [Yersinia ruckeri ATCC 29473]
          Length = 569

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 114/632 (18%), Positives = 215/632 (34%), Gaps = 86/632 (13%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +   E++ +E++    D  Y+Q    +I D  YD L +R          L  +
Sbjct: 24  CPEWSEHELVTEIAKMEEQFGQWDKAYHQQGNSLIDDDIYDQLHQRLSHWKSCVKALEPA 83

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N  +  + G       KVTH +    L+K+       ++I      W          
Sbjct: 84  --VNSHITALAGVS----DKVTHPVAHTGLKKLTGNLAASEWILARKNLW---------- 127

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y +G       RGDG  G+D +   + I  IP ++S   P ++ + 
Sbjct: 128 -VQPKVDGVAVTLTYLQGHLTQVISRGDGVRGQDWTDKAQYISAIPSLIS-PAPPLLVLH 185

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++  +D                 N R + +G L R +P+ +   +  F+        
Sbjct: 186 GELFLRVHDHRQ--------KDSGGINARASVAGALMRKSPSSLLSQIGVFIWAWPDG-- 235

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L+ +  +GF ++       T      ++ ++   +S LP+  DG+V + +E
Sbjct: 236 --PASMVEKLRTLHRMGFTLSEEFSVPITSFTDAVHWRKI-WFQSPLPFVTDGIVIRQEE 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
                    +++   W I+ K+   Q   ++  ++  IGRTG ++ V  L P+ +    +
Sbjct: 293 EPAGHYW--QSQPGYWSIAWKYPPFQQMAQVKSVNFTIGRTGKISAVLHLSPIKLDDKWV 350

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               L      K             ++  GD+V+V  AG+ IP++  +    R       
Sbjct: 351 KGVNLGTVARWKR-----------WNVLPGDQVIVSLAGQGIPRLDKVAW--RVDKRDEI 397

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           S P           R  +                 C  Q + RL     R   ++ G+  
Sbjct: 398 STPDMDQFHTFSCFRRESTL---------------CETQFIARLTWLSGRSGLDMLGISS 442

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                                   L    + +   I  + G G+V    +Y    K +  
Sbjct: 443 GIWQALTAHGLMG----------DLASWLELTPEIIATVPGIGEVKANKIYLQFQKAKTR 492

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
               ++ +LG                       +    +      +WL++     +G   
Sbjct: 493 PFISWLAALGFPKAAIN------------PRVPKTWAALQQQPRGEWLTMAN---IGAGR 537

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
            + I EF  +P  +   E L           E
Sbjct: 538 LKQITEFTTHPEMLQLAERLAYHQVQGFKLSE 569


>gi|162420613|ref|YP_001604687.1| NAD-dependent DNA ligase LigB [Yersinia pestis Angola]
 gi|162353428|gb|ABX87376.1| DNA ligase, NAD-dependent [Yersinia pestis Angola]
          Length = 558

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 217/618 (35%), Gaps = 93/618 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +   E+++LEQ+++     Y+Q     + D  YD L+ +              
Sbjct: 20  CPDWPATRIAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------R 73

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    K   +      +  H +    L+K+ +   L +++      W          
Sbjct: 74  GLPD----KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW---------- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++
Sbjct: 120 -VQPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQ 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++  +             +    N R+  +G L R +P+ +   +  F+        
Sbjct: 178 GELFLLMDGHQQ--------AKSGGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDG-- 227

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E +  ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E
Sbjct: 228 --PTTMKEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEE 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +    +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I
Sbjct: 285 EPAGRYW--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWI 342

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               + +    K             DI  GD + +  AG  IP++ +++   R       
Sbjct: 343 RRVNIGSVTRWK-----------QWDIAPGDHITLALAGHGIPRLDNVVW--RVHQRNTI 389

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P++    Q    + L                  C  Q L RL                
Sbjct: 390 TAPNWDKFHQLSCFQRL---------------PHGCEPQFLSRLIWLSGPGGL----DIG 430

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                F++       I        L   Q  S      I G G+     +Y    + +  
Sbjct: 431 GIGGGFWQELIHHELINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQ 484

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R++ +LG   V +  A+                  ++  +  +W ++     +G + 
Sbjct: 485 PFSRWLLALGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMR 526

Query: 609 AQAIVEFYQNPRNICAVE 626
           A+ I  F+ +P      +
Sbjct: 527 AKQIKHFWDHPDVQALAD 544


>gi|257096605|sp|A9R666|LIGB_YERPG RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 567

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 217/618 (35%), Gaps = 93/618 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +   E+++LEQ+++     Y+Q     + D  YD L+ +              
Sbjct: 29  CPDWPATRIAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------R 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    K   +      +  H +    L+K+ +   L +++      W          
Sbjct: 83  GLPD----KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW---------- 128

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++
Sbjct: 129 -VQPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQ 186

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++  +             +    N R+  +G L R +P+ +   +  F+        
Sbjct: 187 GELFLLMDGHQQ--------AKSGGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDG-- 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E +  ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E
Sbjct: 237 --PTTMKEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEE 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +    +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I
Sbjct: 294 EPAGRYW--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWI 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               + +    K             DI  GD + +  AG  IP++ +++   R       
Sbjct: 352 RRVNIGSVTRWK-----------QWDIAPGDHITLALAGHGIPRLDNVVW--RVHQRNTI 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P++    Q    + L                  C  Q L RL                
Sbjct: 399 TAPNWDKFHQLSCFQRL---------------PHGCEPQFLSRLIWLSGPGGL----DIG 439

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                F++       I        L   Q  S      I G G+     +Y    + +  
Sbjct: 440 GIGGGFWQELIHHELINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQ 493

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R++ +LG   V +  A+                  ++  +  +W ++     +G + 
Sbjct: 494 PFSRWLLALGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMR 535

Query: 609 AQAIVEFYQNPRNICAVE 626
           A+ I  F+ +P      +
Sbjct: 536 AKQIKHFWDHPDVQALAD 553


>gi|51594396|ref|YP_068587.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis IP
           32953]
 gi|186893383|ref|YP_001870495.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis PB1/+]
 gi|81640832|sp|Q66GE4|LIGB_YERPS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737628|sp|B2JYM4|LIGB_YERPB RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|51587678|emb|CAH19278.1| putative DNA ligase [Yersinia pseudotuberculosis IP 32953]
 gi|186696409|gb|ACC87038.1| NAD-dependent DNA ligase adenylation [Yersinia pseudotuberculosis
           PB1/+]
          Length = 567

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 220/618 (35%), Gaps = 93/618 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +   E+++LEQ+++     Y+Q     + D  YD L+ +              
Sbjct: 29  CPDWPATRIAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------R 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    K   +      +  H +    L+K+ +   L +++      W          
Sbjct: 83  GLPD----KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW---------- 128

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++
Sbjct: 129 -VQPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQ 186

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++  +             +    N R+  +G L R +P+ +   +  F+        
Sbjct: 187 GELFLLMDGHQQ--------AKSGGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDG-- 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E +  ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E
Sbjct: 237 --PTTMKEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEE 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +    +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I
Sbjct: 294 EPAGRYW--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWI 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               + +    K             DI  GD + +  AG  IP++ +++   R       
Sbjct: 352 RRVNIGSVTRWK-----------QWDIAPGDHITLALAGHGIPRLDNVVW--RVHQRNTI 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P++    Q    + L                  C  Q L RL         +I G+G 
Sbjct: 399 TAPNWDKFHQLSCFQRL---------------PHGCEPQFLSRLIWLSGPGGLDIGGIGG 443

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                    E     +               +  +I +I G G+     +Y    + +  
Sbjct: 444 GFWQKLIHHELINDLV----------GWLLLTPEQIASIPGIGNARAEKIYQQFQRAKQQ 493

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R++ +LG   V +  A+                  ++  +  +W ++     +G + 
Sbjct: 494 PFSRWLLALGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMR 535

Query: 609 AQAIVEFYQNPRNICAVE 626
           A+ I  F  +P      +
Sbjct: 536 AKQIKHFLDHPDVQALAD 553


>gi|218678540|ref|ZP_03526437.1| NAD-dependent DNA ligase LigA [Rhizobium etli CIAT 894]
          Length = 274

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 130/274 (47%), Positives = 188/274 (68%)

Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           D V+V+RAG+VIP+++D+++ +R  +A  + FP  CP+C S  VR++N KTGK+ +  RC
Sbjct: 1   DTVIVQRAGDVIPQILDVVMEKRTAEAGSYEFPRTCPVCGSHAVREVNEKTGKMDSVRRC 60

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           TGG  C AQ  E LKHFVSR+AF+IEGLG +Q+DFFF++EDP+  IR   DIFTL++RQQ
Sbjct: 61  TGGFICRAQATEHLKHFVSRNAFDIEGLGSKQIDFFFENEDPSLQIRTAPDIFTLEKRQQ 120

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
            S TK+ENI GFG VSV  LY +IN+RR+I+L RFI++LGIRHVG   A+ LA+ Y +Y+
Sbjct: 121 QSLTKLENIDGFGKVSVGKLYAAINERRSIALHRFIYALGIRHVGETTAKLLARSYNTYE 180

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
            FA  +      + + W  L  +  +G+++A+A+VEFY+ PRNI  +  L+ EV+P+   
Sbjct: 181 AFATAMKEAAPLSGEAWNDLNAIEGIGEVVARAMVEFYKEPRNIEVINRLIGEVTPAEAE 240

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
                 S +  K +VFTG+L+K  R +A+     
Sbjct: 241 QPVTTGSPVAGKTVVFTGSLEKFTRDEAKARAES 274


>gi|165926076|ref|ZP_02221908.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936320|ref|ZP_02224889.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011507|ref|ZP_02232405.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|165915934|gb|EDR34542.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921936|gb|EDR39113.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989653|gb|EDR41954.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|262360227|gb|ACY56948.1| DNA ligase, NAD-dependent [Yersinia pestis D106004]
 gi|262364173|gb|ACY60730.1| DNA ligase, NAD-dependent [Yersinia pestis D182038]
          Length = 558

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 216/618 (34%), Gaps = 93/618 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +   E+++LEQ+++     Y+Q     + D  YD L+ +              
Sbjct: 20  CPDWPATRIAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------R 73

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    K   +      +  H +    L+K+ +   L +++      W          
Sbjct: 74  GLPD----KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW---------- 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++
Sbjct: 120 -VQPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQ 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++  +             +    N R+  +G L R +P+ +   +  F+        
Sbjct: 178 GELFLLMDGHQQ--------AKSGGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDG-- 227

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E +  ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E
Sbjct: 228 --PTTMKEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEE 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +    +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I
Sbjct: 285 EPAGRYW--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWI 342

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               + +    K             DI  GD + +  AG  IP++ +++   R       
Sbjct: 343 RRVNIGSVTRWK-----------QWDIAPGDHITLALAGHGIPRLDNVVW--RVHQRNTI 389

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P++    Q    + L                  C  Q L RL                
Sbjct: 390 TAPNWDKFHQLSCFQRL---------------PHGCEPQFLSRLIWLSGPGGL----DIG 430

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                F++       I        L   Q  S      I G G+     +Y    + +  
Sbjct: 431 GIGGGFWQELIHHELINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQ 484

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R++ +LG   V +  A+                  ++  +  +W ++     +G + 
Sbjct: 485 PFSRWLLALGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMR 526

Query: 609 AQAIVEFYQNPRNICAVE 626
           A+ I  F  +P      +
Sbjct: 527 AKQIKHFLDHPDVQALAD 544


>gi|153948758|ref|YP_001399043.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis IP
           31758]
 gi|166990677|sp|A7FCR5|LIGB_YERP3 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|152960253|gb|ABS47714.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758]
          Length = 567

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 216/618 (34%), Gaps = 93/618 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +   E+++LEQ+++     Y+Q     + D  YD L+ +              
Sbjct: 29  CPDWPATRIAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------R 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    K   +      +  H +    L+K+ +   L +++      W          
Sbjct: 83  GLPD----KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW---------- 128

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++
Sbjct: 129 -VQPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQ 186

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++  +             +    N R+  +G L R +P+ +   +  F+        
Sbjct: 187 GELFLLMDGHQQ--------AKSGGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDG-- 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E +  ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E
Sbjct: 237 --PTTMKEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEE 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +    +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I
Sbjct: 294 EPAGRYW--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWI 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               + +    K             DI  GD + +  AG  IP++ +++   R       
Sbjct: 352 RRVNIGSVTRWK-----------QWDIAPGDHITLALAGHGIPRLDNVVW--RVHQRNTI 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P++    Q    + L                  C  Q L RL                
Sbjct: 399 TAPNWDKFHQLSCFQRL---------------PHGCEPQFLSRLIWLSGPGGL----DIG 439

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                F++       I        L   Q  S      I G G+     +Y    + +  
Sbjct: 440 GIGGGFWQELIHHELINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQ 493

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R++ +LG   V +  A+                  ++  +  +W ++     +G + 
Sbjct: 494 PFSRWLLALGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMR 535

Query: 609 AQAIVEFYQNPRNICAVE 626
           A+ I  F  +P      +
Sbjct: 536 AKQIKHFLDHPDVQALAD 553


>gi|22124020|ref|NP_667443.1| NAD-dependent DNA ligase LigB [Yersinia pestis KIM 10]
 gi|45439907|ref|NP_991446.1| NAD-dependent DNA ligase LigB [Yersinia pestis biovar Microtus str.
           91001]
 gi|108813969|ref|YP_649736.1| NAD-dependent DNA ligase LigB [Yersinia pestis Nepal516]
 gi|145601104|ref|YP_001165180.1| NAD-dependent DNA ligase LigB [Yersinia pestis Pestoides F]
 gi|150260895|ref|ZP_01917623.1| putative DNA ligase [Yersinia pestis CA88-4125]
 gi|166213764|ref|ZP_02239799.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167419052|ref|ZP_02310805.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426671|ref|ZP_02318424.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468217|ref|ZP_02332921.1| NAD-dependent DNA ligase LigB [Yersinia pestis FV-1]
 gi|170026382|ref|YP_001722887.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis YPIII]
 gi|218927262|ref|YP_002345137.1| NAD-dependent DNA ligase LigB [Yersinia pestis CO92]
 gi|229836152|ref|ZP_04456320.1| putative DNA ligase [Yersinia pestis Pestoides A]
 gi|229839890|ref|ZP_04460049.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841972|ref|ZP_04462127.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904499|ref|ZP_04519610.1| putative DNA ligase [Yersinia pestis Nepal516]
 gi|270488499|ref|ZP_06205573.1| NAD-dependent DNA ligase OB-fold domain protein [Yersinia pestis
           KIM D27]
 gi|294502148|ref|YP_003566210.1| DNA ligase [Yersinia pestis Z176003]
 gi|123073072|sp|Q1CCZ4|LIGB_YERPN RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|123777855|sp|Q7CLB2|LIGB_YERPE RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|166226366|sp|A4TSE5|LIGB_YERPP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737629|sp|B1JQZ3|LIGB_YERPY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|21956763|gb|AAM83694.1|AE013610_6 putative enzyme [Yersinia pestis KIM 10]
 gi|45434762|gb|AAS60323.1| putative DNA ligase [Yersinia pestis biovar Microtus str. 91001]
 gi|108777617|gb|ABG20136.1| DNA ligase [Yersinia pestis Nepal516]
 gi|115345873|emb|CAL18731.1| putative DNA ligase [Yersinia pestis CO92]
 gi|145212800|gb|ABP42207.1| DNA ligase [Yersinia pestis Pestoides F]
 gi|149290303|gb|EDM40380.1| putative DNA ligase [Yersinia pestis CA88-4125]
 gi|166205166|gb|EDR49646.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963046|gb|EDR59067.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167054360|gb|EDR64177.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752916|gb|ACA70434.1| DNA ligase (NAD(+)) [Yersinia pseudotuberculosis YPIII]
 gi|229678617|gb|EEO74722.1| putative DNA ligase [Yersinia pestis Nepal516]
 gi|229690282|gb|EEO82336.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696256|gb|EEO86303.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706600|gb|EEO92606.1| putative DNA ligase [Yersinia pestis Pestoides A]
 gi|270337003|gb|EFA47780.1| NAD-dependent DNA ligase OB-fold domain protein [Yersinia pestis
           KIM D27]
 gi|294352607|gb|ADE62948.1| DNA ligase [Yersinia pestis Z176003]
 gi|320013395|gb|ADV96966.1| putative DNA ligase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 567

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 216/618 (34%), Gaps = 93/618 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +   E+++LEQ+++     Y+Q     + D  YD L+ +              
Sbjct: 29  CPDWPATRIAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------R 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    K   +      +  H +    L+K+ +   L +++      W          
Sbjct: 83  GLPD----KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW---------- 128

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++
Sbjct: 129 -VQPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQ 186

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++  +             +    N R+  +G L R +P+ +   +  F+        
Sbjct: 187 GELFLLMDGHQQ--------AKSGGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDG-- 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E +  ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E
Sbjct: 237 --PTTMKEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEE 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +    +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I
Sbjct: 294 EPAGRYW--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWI 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               + +    K             DI  GD + +  AG  IP++ +++   R       
Sbjct: 352 RRVNIGSVTRWK-----------QWDIAPGDHITLALAGHGIPRLDNVVW--RVHQRNTI 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P++    Q    + L                  C  Q L RL                
Sbjct: 399 TAPNWDKFHQLSCFQRL---------------PHGCEPQFLSRLIWLSGPGGL----DIG 439

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                F++       I        L   Q  S      I G G+     +Y    + +  
Sbjct: 440 GIGGGFWQELIHHELINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQ 493

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R++ +LG   V +  A+                  ++  +  +W ++     +G + 
Sbjct: 494 PFSRWLLALGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMR 535

Query: 609 AQAIVEFYQNPRNICAVE 626
           A+ I  F  +P      +
Sbjct: 536 AKQIKHFLDHPDVQALAD 553


>gi|62129865|gb|AAX67568.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 502

 Score =  306 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 110/591 (18%), Positives = 205/591 (34%), Gaps = 92/591 (15%)

Query: 48  YDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDL 107
           YD L  R             S   + PLN              H +    + K+ + + +
Sbjct: 2   YDQLSARLVQWQRCVGQDVSSTPVSPPLN----------GTTMHPVAHTGVRKLADRQAV 51

Query: 108 RKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACI 167
            +++      W           ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  I
Sbjct: 52  EQWMRGRSELW-----------VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKI 100

Query: 168 RAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL 227
           R IP+IP+     +     ++GE+++ +   +          R    N R+  +G+L R 
Sbjct: 101 RLIPSIPQTTQGAL-ANAVLQGEIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQ 151

Query: 228 NPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYN 286
           +       L  F+               E L ++   GF   N           +     
Sbjct: 152 DNASALNSLGIFIWAWPDGPANMP----ERLSQLAKAGFSLTNKYTLAVKDASEVERARQ 207

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346
              +  S LP+  DG+V ++ +    +    R     W+ + K+       ++  I   +
Sbjct: 208 SWLT--SALPFVTDGVVIRMAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSV 263

Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406
           G++G +T VA L PV +    +    + +    +             DI  GD++LV  A
Sbjct: 264 GKSGKITVVASLVPVILDDKRVQRVNIGSVKRWEA-----------WDIAPGDQILVSLA 312

Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466
           G+ IP++ +++   R                +S+ V    P      +         C  
Sbjct: 313 GQGIPRLDEVVWRSRE---------------RSKPV----PPDSHFNSLTCFYASATCQE 353

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526
           Q + RL    SR A  ++G+G+       ++            IF+       ++ +I N
Sbjct: 354 QFISRLVWLGSRSALGLDGMGEASWRALHQTHR-------FEHIFSWLA---LTSAQIAN 403

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             GF       ++   N  R     R+I ++ I       A   A    S++        
Sbjct: 404 TPGFAKGKSEQIWRQFNLARRQPFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE- 459

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
                        ++P  G+  A  ++++  NP+       L  +  P  G
Sbjct: 460 ---------QHWRQLPATGERRAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 501


>gi|108809492|ref|YP_653408.1| NAD-dependent DNA ligase LigB [Yersinia pestis Antiqua]
 gi|167402095|ref|ZP_02307572.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|123072562|sp|Q1C259|LIGB_YERPA RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|108781405|gb|ABG15463.1| putative DNA ligase [Yersinia pestis Antiqua]
 gi|167048470|gb|EDR59878.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
          Length = 567

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 216/618 (34%), Gaps = 93/618 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
                  +   E+++LEQ+++     Y+Q     + D  YD L+ +              
Sbjct: 29  CPDWPATRIAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------R 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    K   +      +  H +    L+K+ +   L +++      W          
Sbjct: 83  GLPD----KTESQPIPGKGQFLHPVAHSGLKKLKDETALTRWMAGRKNLW---------- 128

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK V    RG+G  G++ +     I  IP+ ++ N P ++ ++
Sbjct: 129 -VQPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQ 186

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++  +             +    N R+  +G L R +P+ +   +  F+        
Sbjct: 187 GELFLLMDGHQQ--------AKSGGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDG-- 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E +  ++ +GFP      +    H  V  + +    ++ LP+  DG+V + +E
Sbjct: 237 --PTTMKEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEE 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +    +A   +W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I
Sbjct: 294 EPAGRYW--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWI 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               + +    K             DI  GD + +  AG  IP++ +++   R       
Sbjct: 352 RRVNIGSVTRWK-----------QWDIAPGDHITLALAGHGIPRLDNVVW--RVHQRNTI 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P++    Q    + L                  C  Q L RL                
Sbjct: 399 TAPNWDKFHQLSCFQRL---------------PHGCEPQFLSRLIWLSGPGGL----DIG 439

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                F++       I        L   Q  S      I G G+     +Y    + +  
Sbjct: 440 GIGGGFWQELIHHELINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQ 493

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R++ +LG   V +  A+                  ++  +  +W ++     +G + 
Sbjct: 494 PFSRWLLALGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMR 535

Query: 609 AQAIVEFYQNPRNICAVE 626
           A+ I  F  +P      +
Sbjct: 536 AKQIKHFLDHPDVQALAD 553


>gi|325474099|gb|EGC77287.1| hypothetical protein HMPREF9353_01637 [Treponema denticola F0402]
          Length = 437

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 122/492 (24%), Positives = 215/492 (43%), Gaps = 72/492 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  LE+ I  H D YY  ++P I D+E+DAL     A+          +  N     
Sbjct: 4   EKRILDLEKTIKKHQDLYYN-AQPEISDAEFDALWDELKAL----------DPQNKLFFT 52

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +  E      K  H IP  S EK  +      +  ++             + ++ K+DG 
Sbjct: 53  VPLESTDGFAKSEHIIPMGSQEKAADPPSFEAWALKM---------PFKEYIVQYKMDGA 103

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-------PEIIEVRGE 190
            + ++YE+G FV A  RGDG  G+D++  +  +  + + +++N        P    +R E
Sbjct: 104 SLELQYEEGHFVRAVTRGDGKIGDDITENVLKMKGLIKDITVNEGPAYGTKPFSGGIRCE 163

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS--- 247
           V + ++              K  AN RNAA+G++++ N  ++  +LN F +   + S   
Sbjct: 164 VIMLRSIHQKY--------FKDKANCRNAANGLMKKKN-GELCEHLNLFAYDAVQGSIGN 214

Query: 248 ----EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               +   K + E L  ++  GF     V+   +   ++ Y   +  IR +L YDIDGLV
Sbjct: 215 PFTGDAPFKTESEKLVWLKEAGFNCVE-VKYCKSIDEVIEYRAHVMDIRPSLDYDIDGLV 273

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K D      +  +RAR P   I+ KF+ ++A T L +I+         TP+A +EPV +
Sbjct: 274 IKNDTIDP--EDMKRAR-PEKQIAFKFSLEEAVTVLKEIEWSES-GATYTPIALIEPVRL 329

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  A+L N + I+ L+           +++G RV+V + GE+IPK+    + E  P
Sbjct: 330 AGTTVKRASLANPNIIRALN-----------LKIGSRVVVTKRGEIIPKIEA--LAENPP 376

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           + +   +P  C +C S +  +             C   ++C      R++ ++S    +I
Sbjct: 377 NVKEIEYPDTCSVCGSPLTNEGTR--------LYCPN-MSCPKLIHHRIEKWIS--VLDI 425

Query: 484 EGLGKQQLDFFF 495
              G   +   F
Sbjct: 426 RDFGITLIKRLF 437


>gi|322835054|ref|YP_004215081.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602]
 gi|321170255|gb|ADW75954.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602]
          Length = 565

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 121/635 (19%), Positives = 218/635 (34%), Gaps = 90/635 (14%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K            E+  +E   L  +++  D  Y+Q     I DS YD L+++       
Sbjct: 20  KNMPSPDCPVWPSERLTQETHHLTAQLTQWDAAYHQSGSSPIEDSVYDHLRQKQRLWLQC 79

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
                 +  P  P   +    +      TH +    L K+ +   +  ++      W   
Sbjct: 80  ------ASQP-VPELTVPASDDAEF---THPVAHTGLHKMKDKHAVANWMQGRKNLW--- 126

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
                   ++PKIDG  +++ Y  G+      RGDG  G++ +    +IP IP  +    
Sbjct: 127 --------VQPKIDGVAVSLIYRYGQLAALVSRGDGEKGQNWTVKAASIPAIPLHIPDMS 178

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241
           PE+I ++GE+Y+          +  A G     N R+  +G + R + +D+ +    F+ 
Sbjct: 179 PELI-LQGELYLLMTGH-----QQSADGGM---NARSKVAGAMMRASASDLLKQTGIFIW 229

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                  + A      L+K+   GFPV      A +    V  + E       LP+  DG
Sbjct: 230 SWPDGPTLMADH----LEKLSQFGFPVVAQFTHAVSAVEDVEKWRE-DWFHQPLPFATDG 284

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V +  E    K    + +   W ++ K+   +  T +  I    GR+G +T +  L+P+
Sbjct: 285 VVVRQQEEPAGKYW--QNKPAVWAVAWKYPPARQLTDVTGITTTTGRSGKVTVILNLKPL 342

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +   L           +  +           D+  GD+V V  AG+ IP++ ++     
Sbjct: 343 RLDDKL-----------VSKVSVGSVSRFRQWDVLPGDQVAVALAGQGIPRLDEVTWRVS 391

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                P   P+                  +  A    T    C  Q L RL      +A 
Sbjct: 392 KRTEMPLPEPT------------------RYNALSCFTPEPGCMQQFLSRLIWLSGPEAL 433

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           ++ G G         +      I       +   ++  +      + G G      L   
Sbjct: 434 DMAGFGGATWQKLLDASPADSLIS----WLSFNEKELAA------VPGIGVKQAQKLMAQ 483

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I+  R  S  R++ ++G        A              Q  N +    + DW      
Sbjct: 484 IHLAREKSFRRWLSAIGFPSFALGFAER-----------QQSWNRLKQLTSRDWEMT--- 529

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
             +G   A  + +F  +P      EAL +   P+ 
Sbjct: 530 EGIGRKRAAQVFDFIHHPDVEILTEALRQAQLPAF 564


>gi|300907689|ref|ZP_07125317.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 84-1]
 gi|301303881|ref|ZP_07210000.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 124-1]
 gi|300400625|gb|EFJ84163.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 84-1]
 gi|300840844|gb|EFK68604.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 124-1]
 gi|315254034|gb|EFU34002.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 85-1]
          Length = 505

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 108/586 (18%), Positives = 211/586 (36%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F    R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFGSEPR-DVMMPPLN----------GAVMHPVAHTGVRKMV 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGI 281
           ++ R + +D    L  FV       ++      + L+++   GF +     R       +
Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLM----SDRLKELATAGFTLTQTYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 ARVRNEWWK--AELPFVTDGVVVRGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +  +    
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  R     R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|320201328|gb|EFW75909.1| DNA ligase, LigB [Escherichia coli EC4100B]
          Length = 505

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 108/586 (18%), Positives = 210/586 (35%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F    R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFGSEPR-DVMMPPLN----------GAVMHPVAHTGVRKMV 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGI 281
           ++ R + +D    L  FV       ++      + L+++   GF       R       +
Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLM----TDRLKELATAGFTLTQRYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 ARVRNEWWK--AKLPFVTDGVVVRGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +  +    
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  R     R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|312878358|ref|ZP_07738269.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794859|gb|EFR11277.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A]
          Length = 259

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 131/264 (49%), Gaps = 11/264 (4%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+       +     + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSN---FDYVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDI--SIVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
           +F+ LN E        +ANPRNAA+G LR+L+P     R L+ FV  +    +   +   
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKR-IETHA 235

Query: 256 EMLQKMRC-LGFPVNNGVRQANTF 278
           E L+  +  L   V+        +
Sbjct: 236 EALEFFKSVLVLKVSPDYVVCRGY 259


>gi|320193847|gb|EFW68480.1| DNA ligase, LigB [Escherichia coli WV_060327]
          Length = 505

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 109/586 (18%), Positives = 210/586 (35%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F +  R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFGNETR-DVMMPPLN----------GAVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +R I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVRLISAVPQTVSGPLANST-LQGEIFLQRKGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGI 281
           ++ R   +D    L  FV        +      + L+ +   GF +     R       +
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPHLM----TDRLKDLATAGFTLTQTYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVD-EFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 AHVRNEWWK--AKLPFVTDGVVVRAAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLVPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +  +    
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  R     R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|209921119|ref|YP_002295203.1| NAD-dependent DNA ligase LigB [Escherichia coli SE11]
 gi|209914378|dbj|BAG79452.1| putative DNA ligase [Escherichia coli SE11]
          Length = 505

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 108/586 (18%), Positives = 210/586 (35%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F    R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFGSEPR-DVMMPPLN----------GAVMHPVAHTGVRKMV 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGI 281
           ++ R + +D    L  FV       ++      + L+++   GF       R       +
Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLM----TDRLKELATAGFTLTQRYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 ARVRNEWWK--AKLPFVTDGVVVRGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWE-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +  +    
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  R     R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|312831438|emb|CAP78100.2| Uncharacterized DNA ligase-like protein yicF [Escherichia coli
           LF82]
          Length = 505

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 110/586 (18%), Positives = 210/586 (35%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F +  R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFGNETR-DVMMPPLN----------GAVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +R I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVRLISAVPQTVSGPLANST-LQGEIFLQRKGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGI 281
           ++ R   +D    L  FV        +      + L+ +   GF +     R       +
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPHLM----TDRLKDLATAGFTLTQTYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVD-EFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 AHVRNEWWK--AKLPFVTDGVVVRAAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    I    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLAPVMLDDKKIQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +  +    
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  R     R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|281180692|dbj|BAI57022.1| putative DNA ligase [Escherichia coli SE15]
          Length = 505

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 109/586 (18%), Positives = 210/586 (35%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F +  R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFGNETR-DVMIPPLN----------GAVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +R I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVRLISAVPQTVSGPLANST-LQGEIFLKRKGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGI 281
           ++ R   +D    L  FV        +      + L+ +   GF +     R       +
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPHLM----TDRLKDLATAGFTLTQTYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVD-EFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 AHVRNEWWK--AKLPFVTDGVVVRAAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLVPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +  +    
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  R     R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|320191301|gb|EFW65951.1| DNA ligase , LigB [Escherichia coli O157:H7 str. EC1212]
 gi|326339852|gb|EGD63659.1| DNA ligase , LigB [Escherichia coli O157:H7 str. 1125]
          Length = 505

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 108/586 (18%), Positives = 211/586 (36%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F    R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFVSEPR-DVMMPPLN----------GAVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGI 281
           ++ R + +D    L  FV       ++      + L+++   GF       R       +
Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLM----TDRLKELATAGFTLTQRYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+       ++ 
Sbjct: 206 ARVRNEWWK--AKLPFVTDGVVVRGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAKVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +  +    
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  R     R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHRFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|323160743|gb|EFZ46679.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli E128010]
          Length = 505

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 108/586 (18%), Positives = 210/586 (35%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F    R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFVSEPR-DVMMPPLN----------GAVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGI 281
           ++ R + +D    L  FV       ++      + L+++   GF       R       +
Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLM----TDRLKELATAGFTLTQRYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 ARVRNEWWK--AKLPFVTDGVVVRGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +  +    
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  R     R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHRFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVTEWKENAQIKKLGSWLAAQQITGFE 504


>gi|323155299|gb|EFZ41482.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli EPECa14]
 gi|323177651|gb|EFZ63235.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 1180]
          Length = 505

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 108/586 (18%), Positives = 210/586 (35%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F    R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFVSEPR-DVMMPPLN----------GAVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGI 281
           ++ R + +D    L  FV       ++      + L+++   GF       R       +
Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLM----TDRLKELATAGFTLTQRYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 ARVRNEWWK--AKLPFVTDGVVVRGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +  +    
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  R     R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHRFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|332997757|gb|EGK17368.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-272]
 gi|333013292|gb|EGK32664.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-227]
          Length = 505

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 109/586 (18%), Positives = 210/586 (35%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F    R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFVSEPR-DVMMPPLN----------GAVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGI 281
           ++ R   +D    L  FV       ++      + L+++   GF       R       +
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLM----TDRLKELATAGFTLTQRYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 ARVRNEWWK--AKLPFVTDGVVVRGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +  +    
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  RN    R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHQFNLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|317494707|ref|ZP_07953119.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917309|gb|EFV38656.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 571

 Score =  299 bits (766), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 113/555 (20%), Positives = 208/555 (37%), Gaps = 77/555 (13%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P    + E+A  E+S+L+Q+++  D+ Y+      + D  YD + +R  +    F  L 
Sbjct: 18  PPCPDWAAERATHEISALQQQMAKWDEAYFLQGSSPVSDEIYDQMAQRLKSWKQCF--LT 75

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
            S   N  L     E       ++H +    L K+ N   +R ++      W        
Sbjct: 76  NSSSSNSAL-----EPTSPRNTLSHPVAHTGLNKLENEAAVRDWLKGKESVW-------- 122

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              ++PKIDG  +T+ Y+ G+      RGDG  G+D +    +I  IP+ +  +      
Sbjct: 123 ---IQPKIDGVAVTLHYQHGRLKSMISRGDGLIGQDWTKASASISAIPKKIPDDE-AYTV 178

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL-NPTDITRYLNFFVHGLGK 245
           ++GE+++   D            R    N R+  +G +R     ++    L  F+ G   
Sbjct: 179 LQGELFLKVTDHQQ--------KRDGGINARSKVAGAMRLKFLSSETANQLEIFIWGYPD 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                     + L K+  LGFP+      A T    V  + E    +  LP+  DG+V  
Sbjct: 231 GPAEMP----QRLNKLARLGFPLAEQYTHAVTDVVDVEKWREY-WYQQPLPFVTDGIVLH 285

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +         R   P W  + K+  K + T + D+   IGR+G +  V  LEPV +  
Sbjct: 286 MAQQPASVLW--RPSPPGWAAAWKYPLKSSVTEVKDVQFSIGRSGRINAVLLLEPVTVDD 343

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++  +L +    +             D++  D+V V  AG+  P +  +I   R P+ 
Sbjct: 344 KRVSRVSLGSVMRWQ-----------QWDVQPHDQVSVVLAGQGTPHLEKVIW--RSPER 390

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
              + P                  GK  +         C  Q + R+       +  I G
Sbjct: 391 VIVNAPDR----------------GKYHSLSCWHYAPGCEQQFIARVVWMA--QSLGITG 432

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G+       +S +    +    D+  L   +  S  +   I     +S      +I + 
Sbjct: 433 VGEAFWRELAQSGE----LSDLDDVLALTEHRLVS--RGMGINRAQRLSA-----AIERI 481

Query: 546 RNISLERFIFSLGIR 560
           + +    ++ +LG+ 
Sbjct: 482 KLVPSGAWLRALGMP 496


>gi|300725264|ref|YP_003714593.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
 gi|297631810|emb|CBJ92531.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
          Length = 577

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/622 (19%), Positives = 227/622 (36%), Gaps = 92/622 (14%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
              + E+ + E + L+Q+++  D  Y Q     I D  YD L                 +
Sbjct: 35  AKWTQEKLQHETAHLKQQMAKWDHLYRQQGISEIDDEIYDQLLETLRLWQRC-----SEQ 89

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P G    +         K  H +    L K+  +  +R+++    + W           
Sbjct: 90  IPEG-TFAV---PVSQEGKQPHPVQHTGLHKLKEVRGVRQWLQGRTKVW----------- 134

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           L+PKIDG  +T+ YEKG+ +    RG+G  G D       I +IP+++  + PE + ++G
Sbjct: 135 LQPKIDGVAVTLIYEKGQLMRLISRGNGIEGTDWMDKSPFISSIPKLIK-HAPEHLVLQG 193

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS- 247
           E++  +                     R+  +G++ R  P  +  R +  F+        
Sbjct: 194 ELFWQQKSHRQFTVGSQGA--------RSKVAGLMMRKTPEPEALRQIGIFIWSWPDGPT 245

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           ++ AK      +++  +GFP+        T        + +       LP+  DG+V + 
Sbjct: 246 DMVAKS-----EQLASMGFPLTQQYSHPITHIDDAEKRWTDYFVQ--PLPFATDGVVLRQ 298

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +     +Q   R  S  W I+ K+  +Q  T + D++  IGRTG ++ V  LE V +   
Sbjct: 299 EIEPTGRQW--RTGSNSWAIAWKYPLRQQVTTVKDVNFTIGRTGRISVVLMLEKVRLDDR 356

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            ++  ++ +    K            R++  GD++ V  AG  IPK+  ++    ER   
Sbjct: 357 QVSRVSIGSVKRWK-----------QRNVYPGDKITVALAGHGIPKLDKVVWRMVERPVI 405

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             P         C S     LN + G  V          C  Q + RL     +    ++
Sbjct: 406 QLPDEQHYHFLSCLS-----LNHEGGTGVND---VNEHPCQQQFIARLTWLGEK--LKMK 455

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G        K             +  L         ++E + G G      L+    +
Sbjct: 456 GVGPGTWSLLVKHGM----------VTNLTDWLALDQVRLEKVPGIGSKRAELLFSQFRQ 505

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++  +  +  ++G+ +         A  +  +  +  E+  +  H      +  R    
Sbjct: 506 AKSRPVSLWREAVGLPY---------ANRFTDHIGWPWEVQLLDKHIKGSLTAKQR---- 552

Query: 605 GDIIAQAIVEFYQNPRNICAVE 626
                + I+ F Q+P    AV+
Sbjct: 553 -----EKILAFLQHPEIKAAVD 569


>gi|323166867|gb|EFZ52606.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           sonnei 53G]
          Length = 505

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 108/586 (18%), Positives = 208/586 (35%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F    R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFGSEPR-DVMMPPLN----------GAVMHPVAHTGVRKMV 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGI 281
           ++ R   +D    L  FV       ++      + L+++   GF       R       +
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLM----TDRLKELATAGFTLTQRYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVD-EFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 ARVRNEWWK--AKLPFVTDGVVVRAAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +  +    
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  R     R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q +       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQRLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|332997449|gb|EGK17065.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-218]
          Length = 505

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 109/586 (18%), Positives = 209/586 (35%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F    R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFVSEPR-DVMMPPLN----------GAVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGI 281
           ++ R   +D    L  FV       ++      + L+++   GF       R       +
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLM----TDRLKELATAGFTLTQRYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 ARVRNEWWK--AKLPFVTDGVVVRGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +       
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNPLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  RN    R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHQFNLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|323173255|gb|EFZ58884.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli LT-68]
          Length = 505

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 109/586 (18%), Positives = 209/586 (35%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F    R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFVSEPR-DVMMPPLN----------GAVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ--------QMGGINARTKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGI 281
           ++ R   +D    L  FV       ++      + L+++   GF       R       +
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLM----TDRLKELATAGFTLTQRYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 ARVRNEWWK--AKLPFVTDGVVVRGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +  +    
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G        ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGGAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  RN    R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHQFNLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|226942521|ref|YP_002797594.1| NAD-dependent DNA ligase LigB [Azotobacter vinelandii DJ]
 gi|257096555|sp|C1DIC2|LIGB_AZOVD RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226717448|gb|ACO76619.1| NAD-dependent DNA ligase [Azotobacter vinelandii DJ]
          Length = 560

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 119/621 (19%), Positives = 223/621 (35%), Gaps = 96/621 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               + ++A  EL++L + +   D  Y++  +  + D  YD  + R       FP  A +
Sbjct: 25  CPDWTAQRAAAELAALAERLRQWDVAYHRDGRSPVADELYDQARARLADWNRCFPGQADA 84

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                P       +  S   + H +P   L K+ +   +R ++      W          
Sbjct: 85  ----SP-----EPLAGSAGPLLHPVPHTGLAKL-DEAAVRDWMATREDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             +PK+DG  +T+ Y  G+   A  RGDG  G+D +A +R +P +PR L+      + ++
Sbjct: 125 -TQPKVDGVAVTLEYADGRLRRAISRGDGRHGQDWTARVRRLPALPRQLAER--RRLILQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKT 246
           GE+Y      +               + R   +G+L R  L+  D    +  FV      
Sbjct: 182 GELYWRLPGHVQ--------AEAGGRSARARVAGLLARDTLDDGDAA-GIGLFVWDWPNG 232

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                      L  +  LGF       +          + E +  R  LP+  DG+V + 
Sbjct: 233 PADMR----ARLDGLERLGFAEARRYSRPVADFATARQWRE-RWYREPLPFASDGVVLRQ 287

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
                 ++   RA  P W ++ K+   QA   +  +  +IGR+G +TP   L+PV +   
Sbjct: 288 GRRPPGERW--RAEPPHWAVAWKYPLAQALAEVRAVRFRIGRSGRITPQLELQPVRLDDR 345

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I    L +    + L           D+R GD+V ++ AG+ IP+V  ++         
Sbjct: 346 QIRRVALGSLRRWREL-----------DVRPGDQVAIRLAGQSIPQVDAVVWR------- 387

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
                      +   +   +P     ++  R   G  C  Q L RL     R   ++ G+
Sbjct: 388 ---------AAERPALPSPDPAAHHALSCWRPLPG--CEEQFLARLDWLGGRRGLDLRGV 436

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+   +   ++            +  L    +    ++  + GFG+ S + L +     R
Sbjct: 437 GRGTWEALLENGR----------LDDLLGWLELDEARLAELPGFGERSASLLAERFRAAR 486

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                 ++ +LG+   G                     + +     + W      P +G 
Sbjct: 487 RRPFPMWLRALGLPPAGEAT-------------LPPSWDELAGRGPEQWQRE---PGIGP 530

Query: 607 IIAQAIVEFYQNPRNICAVEA 627
             A+ +  F+ +P      + 
Sbjct: 531 GRARQLQAFFAHPEVQALRQR 551


>gi|332996128|gb|EGK15755.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri VA-6]
          Length = 505

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 108/586 (18%), Positives = 209/586 (35%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F    R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFVSEPR-DVMMPPLN----------GAVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGI 281
           ++ R   +D    L  FV       ++      + L+++   GF       R       +
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLM----TDRLKELATAGFTLTQRYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 ARVRNEWWK--AKLPFVTDGVVVRGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV   G+ IP++ D++    ER                         P   +  +    
Sbjct: 310 ILVSLGGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  RN    R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHQFNLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|254229733|ref|ZP_04923142.1| DNA ligase [Vibrio sp. Ex25]
 gi|151937778|gb|EDN56627.1| DNA ligase [Vibrio sp. Ex25]
          Length = 287

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 81/234 (34%), Positives = 121/234 (51%), Gaps = 7/234 (2%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL      + P
Sbjct: 23  ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITV---DSP 79

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+   +  +VTH +P LSL+  ++  +L  F  R       +      +  EPK+
Sbjct: 80  SQRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSQSVKE--YCCEPKL 137

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  N  P  +EVRGEV++
Sbjct: 138 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVFM 197

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
            K  F  LN+     G K + N RNAA+G LR+L+     +R L+F+ +  G+ 
Sbjct: 198 PKAGFEKLNELARKKGEKIFVNXRNAAAGSLRQLDSRITASRPLSFYAYSGGRG 251


>gi|149198973|ref|ZP_01876014.1| NAD-dependent DNA ligase [Lentisphaera araneosa HTCC2155]
 gi|149137968|gb|EDM26380.1| NAD-dependent DNA ligase [Lentisphaera araneosa HTCC2155]
          Length = 647

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 137/714 (19%), Positives = 258/714 (36%), Gaps = 114/714 (15%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           + +L+ ++   +  Y    +  + D+EYD L      +        R         K+G 
Sbjct: 3   IDALKAKLDQANQLYRTGGESPLSDAEYDYL------LEQVNDQKFRD--------KVGY 48

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E+     KV  ++P  SL KI    ++  +                   + PK DG  + 
Sbjct: 49  EI--EKNKVELAVPMGSLNKIKTQAEVFDWSKSKSIPL------DTEICVTPKYDGLSLL 100

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + +  G +  A  RGDG  G+DV       P     L  +      + GE  +   D   
Sbjct: 101 VYFVDGIYKGAYTRGDGMFGQDVGEHFTVNPLCDLRLPQDF--TGYLIGECIM---DEAK 155

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
              +        + NPRN  +G+L R   +     + +  +G+        + Q E   +
Sbjct: 156 FQTKYSEK----FKNPRNMVAGLLSRKTLSRELADVCYVAYGVRSAQMAHKQDQVEFCNR 211

Query: 261 M--RCLGFPV-NNGVRQAN-TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
                  + V     +  +     +   Y+      S   +  DGLV ++++  L  Q+G
Sbjct: 212 YINAQWKYKVLCPLYKLEDLKDAELQKVYD------SETRFQCDGLVLEINDSDLFHQIG 265

Query: 317 ERARSPRWMISHKFAEKQ---ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +   S     +  +  +      + + ++  QI + G   PV R+EP+++ G  I+N T 
Sbjct: 266 KETNSLNPGAARAWKPESDDSLPSIVKEVVWQISKNGAAKPVIRIEPIDLAGVTISNVTG 325

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
            N  +I+              I  G  V + R+G+VIPKV+ +         +    P  
Sbjct: 326 INARFIED-----------SGIAKGATVTIIRSGDVIPKVIGV-----PNAIENVDLPKQ 369

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S +V + N           C   L C A     L  F S      + +G+  +  
Sbjct: 370 CPSCESELVWNENR------VDIVCENKL-CPATNKAALIDFFS--TLKADEVGEGIITS 420

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR-RNISLER 552
            + +     S++   ++         +   +  + GF       + DSI     ++ L R
Sbjct: 421 LWDAGYQ--SVKNLLNL---------TMEDLLKLEGFKQRKAKKVLDSIKISVVDVPLPR 469

Query: 553 FIFSLGI-RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
              +  + + +G +    L KY               A     +  L+ V    +I A++
Sbjct: 470 LQHASNLFKGLGEKKLELLQKY-------------DQAGIKPSFEELLEVDGYSEISAKS 516

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQKIQRHKAQ 667
            ++         +++A  +  +   G   K V          + LVFTG     +  + +
Sbjct: 517 YLD---------SIDAYWEFAAELPGLKYKKVLVNEGGMFAGQTLVFTG----FRSPELE 563

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E V   G  + + +S+KT +++V       SK +KA  LGV++   +     L 
Sbjct: 564 EQVKTEGGKIGSSVSKKTSVLVVKAKGSGSSKEKKAIDLGVEVWGRDDLENKLN 617


>gi|313647479|gb|EFS11929.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri 2a str. 2457T]
 gi|332749898|gb|EGJ80310.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-671]
 gi|332764151|gb|EGJ94388.1| DNA ligase [Shigella flexneri 2930-71]
 gi|333012849|gb|EGK32226.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-304]
          Length = 505

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 108/586 (18%), Positives = 208/586 (35%), Gaps = 93/586 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F    R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFVSEPR-DVMMPPLN----------GAVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  + + +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVSLISAVLQTVSGPLANST-LQGEIFLQREGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGI 281
           ++ R   +D    L  FV       ++      + L+++   GF       R       +
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLM----TDRLKELATAGFTLTQRYTRAVKNADEV 205

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
               NE     + LP+  DG+V +   E   +  L  +A    W+++ K+        + 
Sbjct: 206 ARVRNEWWK--AKLPFVTDGVVVRGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVK 260

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
            I   +G++G ++ VA L PV +    +    + +    +             DI  GD+
Sbjct: 261 AIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQ 309

Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +LV  AG+ IP++ D++    ER                         P   +       
Sbjct: 310 ILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNPLTCY 348

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                C  Q + RL    S+    ++G+G+       ++            IF+      
Sbjct: 349 FASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLL 398

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYY 574
            +  +++N  G        L+   N  RN    R++ ++GI      + A   RS ++  
Sbjct: 399 LTPEQLQNTPGIAKSKSAQLWHQFNLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLL 458

Query: 575 LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 459 FSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 504


>gi|37524304|ref|NP_927648.1| NAD-dependent DNA ligase LigB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81420505|sp|Q7N9N4|LIGB_PHOLL RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|36783727|emb|CAE12581.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 580

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 114/625 (18%), Positives = 224/625 (35%), Gaps = 105/625 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S ++ ++E +SL Q++++ D  Y Q     I D  YD L                S
Sbjct: 31  CPEWSQDKLQRETNSLMQQMAHWDQLYRQKGISEIDDEVYDQLMSELTHWQFCLKQAPHS 90

Query: 69  EDPNGPLNKIGGEMNLSLF--KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           + P                  K+ H +    L K+ + +++ +++              +
Sbjct: 91  DFP-----------VEVFPDNKLVHPVAHTGLSKLKDKQEINRWL-----------HGRL 128

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              L+PKIDG  +T+ Y+ GK V    RG+G  G + +A  R IP IP+ +  N P  + 
Sbjct: 129 PVWLQPKIDGVAVTLVYQNGKLVSLISRGNGAEGVNWTAKSRYIPDIPQNI-ENAPPDLV 187

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           ++GE+++ K +          +G       RN  +G++ R + +   + +  F+      
Sbjct: 188 LQGELFLHKEEH-----RQQLLGSD---GARNRVAGLMMRKDHSSELKQIGLFIWSWPDG 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                      L+K+  +GFP+      +      +             + +  DG+V K
Sbjct: 240 PAEMES----KLRKLADMGFPLALRYSHKIEEPEQVQKLRMHYFEQ--PMLFATDGIVLK 293

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
            +      Q   R+ S  W ++ K   +   T++ +++  IGRTG ++ V  L+ V +  
Sbjct: 294 QEIEPKGNQW--RSGSNSWAVAWKHPLRHQVTQVREVNFTIGRTGKISVVLGLDKVKLDD 351

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHP 423
             I+   + +    + L           D+  GDRV +  AG  IPK+  ++    ER  
Sbjct: 352 RQISRVNIGSVRRWRQL-----------DVLPGDRVTLTLAGHGIPKLAQVVWRIKERQD 400

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
              P         C +  V                     C  Q   RLK        N+
Sbjct: 401 IQPPDKQHYHALSCLTLTV--------------------GCEQQFNARLKWL----GENL 436

Query: 484 E--GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +  G+         + +           +  L      S  +I  + G GD     +Y  
Sbjct: 437 QMTGVSSGSWAMLTERKL----------VTDLTGWLALSAQQIAALPGIGDKRAQAIYSQ 486

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN--------- 592
            +K +N     ++  +G+ ++       L+     +Q   Q++                 
Sbjct: 487 FSKAKNQPFSYWMKGIGVPYM-----DKLSDNVYHWQQLEQKLAAAQLKQQLTVGQLKKL 541

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQ 617
            D++S  ++  + + ++ A +  + 
Sbjct: 542 SDFVSDAQIKAIAEKLSVAGITGFD 566


>gi|290473319|ref|YP_003466185.1| DNA ligase [Xenorhabdus bovienii SS-2004]
 gi|289172618|emb|CBJ79387.1| DNA ligase (modular protein) [Xenorhabdus bovienii SS-2004]
          Length = 619

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 109/616 (17%), Positives = 216/616 (35%), Gaps = 94/616 (15%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +        E+ ++E+  L ++++  D  Y Q     I D  YD L              
Sbjct: 42  MADCPVWPQEKIQREMQHLTRQMAEWDQLYRQQGISEIDDEFYDQLLEILTLWRTC---- 97

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              +  +     +         K  H +    L K+  ++++ +++      W       
Sbjct: 98  -LHQTSDS-TFSV---AVPREGKQPHPVQHTGLNKLKGVKEIHQWLQGRSVVW------- 145

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
               L+PK+DG  +T+ YEKG+ V    RG+G  G +       I  IP+ +  N PE +
Sbjct: 146 ----LQPKVDGVAVTLVYEKGRLVGLISRGNGSEGTNWMDKSSFITDIPKQIK-NAPERL 200

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
            ++GE++  ++     N      G +     R+  +G++ R +       +  F+ G   
Sbjct: 201 VLQGELFWQQD-----NHRQSVAGGQ---GARSKVAGLMMRKSSAPELGQIGIFIWGWPD 252

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                A      L+++  +GFP       +  +       ++        LP+  DG+V 
Sbjct: 253 GPNEMAV----KLERLASMGFPTAQQYSHRIFSAEDAEKRWSSYFIQ--PLPFATDGVVL 306

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           + +     +Q   RA S  W I+ K+  +Q  T + D++ +IGRTG ++ +  LE V + 
Sbjct: 307 RQETEPTGRQW--RAGSNSWAIAWKYPLQQQLTTVRDVNFKIGRTGRISVLLELEKVKLD 364

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERH 422
              +    L +    +             ++  GD+V V  AG  +PK+  ++    ER 
Sbjct: 365 DRQVRRVNLGSVSRWR-----------QWNVYPGDKVTVALAGHGVPKLDKVVWRIAERP 413

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
               P +       C                         +C  Q + RL         N
Sbjct: 414 DIQPPNAQDFHSLSC--------------------LVSHDSCQQQFIARLTWLGEN--LN 451

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           ++G+G+       K       +    D   L   Q T       +   G      ++   
Sbjct: 452 MQGIGQGTWAALVKH----GLVTHLTDWLALDIAQLT------EVPNIGIKRAELIFAQF 501

Query: 543 NKRRNISLERFIFSLGIRHVGAEI-----------ARSLAKYYLSYQNFAQEINNIIAHN 591
            + R   L  +  ++G+ +                +++ AK  L+ +  A+    +    
Sbjct: 502 QQARLQPLSSWREAIGLPYANRFTDEMGWQQDLLLSKTGAKNSLTTKQTAKIAAFLQHPE 561

Query: 592 NDDWLSLIRVPLVGDI 607
               +  + V  +G+ 
Sbjct: 562 IKTLVHALTVHGIGEK 577


>gi|299145804|ref|ZP_07038872.1| putative BRCA1 C Terminus (BRCT) domain protein [Bacteroides sp.
           3_1_23]
 gi|298516295|gb|EFI40176.1| putative BRCA1 C Terminus (BRCT) domain protein [Bacteroides sp.
           3_1_23]
          Length = 652

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 140/717 (19%), Positives = 271/717 (37%), Gaps = 105/717 (14%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK-IGGEM 82
           L   I  H++ Y +   P I D+EYDA       I      L ++ DP+    K      
Sbjct: 13  LLDMIKRHNNMY-RMGTPEISDAEYDA------EIE-----LLKTLDPDNEWFKHTEPAF 60

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                K    IP  SL K+ +I +L+K+      +       +      PK+DG   ++ 
Sbjct: 61  VPETRKRALPIPMKSLNKVKDISELKKW------YMSLGLKGNAGVICMPKLDGL--SLL 112

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR-GEVYISKNDFLA- 200
           Y +      +  G  + G+D ++  RA      +   N         GE  I+++D+   
Sbjct: 113 YNELTGETYSRGGIENEGQDCTSHYRA-----SIQCYNPASCFHYTFGEFVINRSDWEQH 167

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
            + +        + +PRN A+G+L R  P D   + +FF +G+ ++S       + +++ 
Sbjct: 168 FHGKRSKFTGDIFKSPRNTAAGLLNRDEPCDYLEHASFFRYGVDESSLHDYNNFHSLIET 227

Query: 261 MRCLGFPVNNGVRQANTFHGIVSY-----YNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           +  +       +        +        + E      +  Y IDG+V  +D+  L + +
Sbjct: 228 ICNIYQQ--EHLYHFAFIDELNEELLMNLFKEW-----SKVYPIDGIVIYIDDLRLWEVI 280

Query: 316 GE--RARSPRWMISHKFAE--KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           G    + +P + I++K  +  +   T + DI  ++ ++G L PV  +E V+ G   + N 
Sbjct: 281 GRHQTSGNPLYAIAYKHPDFTESFETTVKDIVWKVSKSGALKPVVNIEMVDTGDCNMENP 340

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERHPDAQPFSF 430
           T +N  +I              +I  G  +LV R+G VIPK++  +    +    + +  
Sbjct: 341 TGYNAGWIND-----------HEIAKGAEILVTRSGGVIPKILSTLTPATQEEQEKLWDE 389

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            S CP C S  + + N           C   L+C   QL ++  F        E +G++ 
Sbjct: 390 MSECPHCGSPTMWNENHIEL-------CCTNLSCPGVQLAKIIFFY--LTCGAENMGEET 440

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN-IS 549
           L   F +            I  +             I GFGD     + ++  K    + 
Sbjct: 441 LSKIFNAG-----FTSIPAILNITFNDLI------KIEGFGDSISKIILENNRKIMQGVD 489

Query: 550 LERFIFSLG-IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           L   + +    + +G   A+ +                +   +++D  S  +   +    
Sbjct: 490 LATLMQASDCFKGIGKIKAQKI----------------LDEMDDEDLCSFCQGWYINHEP 533

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT-------LQKI 661
                +F   P  +  +          +   E  +  ++  K +V  G        +   
Sbjct: 534 DVQSEDFKNCPITVQNLLLGYFPFMAFL--EETKIPYKLSPKTVVLEGKCKGLSICVSGF 591

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLF 716
           +    +E +T  G  + + +S+KT  ++V D     SK+ KA+ LG+ I++ E+F  
Sbjct: 592 RDSNLEEVITNEGGKIVSGVSKKTTHLVVKDKSANSSKISKAKLLGIPILSIEEFCD 648


>gi|253987704|ref|YP_003039060.1| NAD-dependent DNA ligase LigB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779154|emb|CAQ82314.1| similar to putative dna ligase-like protein yicf of escherichia
           coli [Photorhabdus asymbiotica]
          Length = 578

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 114/584 (19%), Positives = 213/584 (36%), Gaps = 90/584 (15%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
              A S ++ ++E  SL Q+++  D  Y Q     I D  YD L                
Sbjct: 28  DCPAWSQDKLQRETKSLMQQMARWDQLYRQKGISEIDDEVYDQLMADLIHWQLCLKQEPH 87

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S+ P                K+ H +    L K+ +  ++ +++              + 
Sbjct: 88  SDFP---------ATVFPDNKLVHPVAHTGLSKLKDEREINRWL-----------HGRLP 127

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             L+PKIDG  +T+ Y++GK V    RG+G  G D +A    I  IP+ +  N P  + +
Sbjct: 128 VWLQPKIDGVAVTLVYQQGKLVSLISRGNGSEGVDWTAKSPYISEIPQEI-ENAPPYMVL 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+++ K      N  +        A  RN  +G++ R   +   + +  F+       
Sbjct: 187 QGELFLHK------NGHIQQSSGSDGA--RNRVAGLMMRKEHSPELKQVGVFIWSWPDG- 237

Query: 248 EIFAKGQYEMLQKMRCLGFPV----NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     LQK+  +GFP+    ++ + +      +  +Y E       +P+  DG+V
Sbjct: 238 ---PVDMDGKLQKLANMGFPLALRYSHKIERPEQVQKLRMHYFE-----QPMPFATDGIV 289

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K +      Q   R+ S  W ++ K   +   T++ ++   IGRTG ++ V  L+ V +
Sbjct: 290 LKQEIEPKGNQW--RSGSNSWAVAWKHPLRHQVTQVREVSFTIGRTGKISVVLGLDKVKL 347

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
               ++   + +    + L           D+  GDRV +  AG  IPK+  ++   R  
Sbjct: 348 DDRQVSRVNIGSVRRWQQL-----------DVLPGDRVTLTLAGHGIPKLAQVVW--RIK 394

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           + Q    P                   +  A    T    C  Q   RLK     +  ++
Sbjct: 395 ERQDIQPPD----------------KQRYHALSCLTLTAGCEQQFNARLKWLG--EHLHM 436

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G+         + +           +  L      S   I  + G GD     +Y   +
Sbjct: 437 TGVSSGSWAMLTEQKL----------VTDLTSWLTLSVQDIAALPGIGDKRAQAIYSQFS 486

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
           K +N     ++  +G+ ++       L+     +Q   Q++   
Sbjct: 487 KAKNQPFSYWMKGIGVPYM-----DKLSNDVDHWQQLEQKLAEA 525


>gi|265763497|ref|ZP_06092065.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16]
 gi|263256105|gb|EEZ27451.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16]
          Length = 652

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 139/717 (19%), Positives = 265/717 (36%), Gaps = 105/717 (14%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK-IGGEM 82
           L   I  H+  Y +   P I D+EYDA       I      L ++ DP+    K      
Sbjct: 13  LLDMIKRHNKMY-RMGAPEISDAEYDA------EIE-----LLKTLDPDNEWFKHTEPAF 60

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                K    IP  SL K+ +I +L+K+      +       +      PK+DG   ++ 
Sbjct: 61  VSETRKRALPIPMKSLNKVKDISELKKW------YMSLGLKGNAGVVCMPKLDGL--SLL 112

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR-GEVYISKNDFLA- 200
           Y +      +  G  + G+D +   +A          N         GE  I+++D+   
Sbjct: 113 YNELTGEAYSRGGIENEGQDCTNHYQA-----STQCYNPASSFHYTFGEFVINRSDWEQH 167

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
            + +        + +PRN A+G+L R  P D   + +FF +G+ ++S       + +++ 
Sbjct: 168 FHGKRSKFTGDIFKSPRNTAAGLLNRDEPCDYLEHASFFRYGVDESSLHDYNNFHSLIET 227

Query: 261 MRCLGFPVNNGVRQANTFHGIVSY-----YNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           +  +       +        +        + E   I     Y IDG+V  VD+  L + +
Sbjct: 228 ICNIYQQ--EHLYHFAFIDELNEELLMNLFKEWSKI-----YPIDGIVIYVDDLRLWEVI 280

Query: 316 GE--RARSPRWMISHKFAE--KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           G    + +P + I++K  +  +   T +  I  ++ ++G L PV  +E V+ G   + N 
Sbjct: 281 GRHQTSGNPLYAIAYKHPDFTESFETTVKGIVWKVSKSGALKPVVNIEMVDTGDCNMENP 340

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERHPDAQPFSF 430
           T +N  +I              +I  G  +LV R+G VIPK++  +    +    + +  
Sbjct: 341 TGYNAGWIND-----------HEIAKGAEILVTRSGGVIPKILSTLSPATQEEQEKLWDE 389

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            S CP C S  + + N           C    +C   QL ++  F        E +G++ 
Sbjct: 390 MSECPHCGSSTMWNENHIEL-------CCTNPSCPGVQLAKIIFFY--LTCGAENMGEET 440

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN-IS 549
           L   F +            I  +             I GFGD     + ++  K    + 
Sbjct: 441 LSKIFNAG-----FTSIPAILNVTFNDLI------KIEGFGDSISNIILENNRKIMQGVD 489

Query: 550 LERFIFSLG-IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           L   + +    + +G   A+ +                +   +++D  S  +   +    
Sbjct: 490 LATLMQASDCFKGIGKIKAQKI----------------LDEMDDEDLCSFCQGWYINHEP 533

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT-------LQKI 661
                +F   P  +  +          +   E  +  ++  K  V  G        +   
Sbjct: 534 DVQSEDFKNCPITVQNLLLGYFPFMAFL--EETKIPYKLSPKTAVLEGKCKGLSICVSGF 591

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLF 716
           +    +E +T  G  + + +S+KT  ++V D     SK+ KA+ LG+ I++ E+F  
Sbjct: 592 RDSNLEEVITNEGGKIVSGVSKKTTHLVVKDKSANSSKISKAKLLGIPILSIEEFCD 648


>gi|257793288|ref|ZP_05642267.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
 gi|257787260|gb|EEV25600.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
          Length = 245

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/254 (33%), Positives = 129/254 (50%), Gaps = 11/254 (4%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI-----GNVGYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  L +  P  +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGF 266
            Q E L ++  LGF
Sbjct: 231 SQSEALDELDKLGF 244


>gi|303252068|ref|ZP_07338237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649050|gb|EFL79237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 253

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/271 (34%), Positives = 147/271 (54%), Gaps = 21/271 (7%)

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
           +  A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++   + E     +  PAD+
Sbjct: 2   EGEAVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMECE----LVHTPADL 57

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           F L         ++      G+ S  N  +SI K +N +L RF+F+LGIR VG   A++L
Sbjct: 58  FKLDHTTLMRLERM------GEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNL 111

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A ++ +                  +  L  V  VG+++A  IV F+Q P N+  VE L+ 
Sbjct: 112 ANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVRFWQEPHNVAVVEDLIS 161

Query: 631 E-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           + +        +   + ++ K +V TGTL ++ R +A+  +   G  VS  +S KTD +I
Sbjct: 162 QGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLI 221

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            G+  GSKL KAQ+LGVK++ E++F+ L  +
Sbjct: 222 AGEKAGSKLAKAQELGVKVLTEQEFIALTGE 252


>gi|332089533|gb|EGI94637.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           boydii 3594-74]
          Length = 417

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/471 (19%), Positives = 174/471 (36%), Gaps = 76/471 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+   +Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 11  CPAWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 69

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 70  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 109

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 110 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 167

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 168 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 219

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 220 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 273

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L  V +   
Sbjct: 274 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVMLDDK 330

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 331 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 378

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
                                 P   +  +         C  Q + RL   
Sbjct: 379 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWL 409


>gi|320185697|gb|EFW60455.1| DNA ligase , LigB [Shigella flexneri CDC 796-83]
          Length = 411

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/471 (19%), Positives = 174/471 (36%), Gaps = 76/471 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+   +Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 5   CPAWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR- 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 64  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 103

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 104 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 161

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          +    N R   +G++ R + +D    L  FV       +
Sbjct: 162 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 213

Query: 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + L+++   GF +     R       +    NE     + LP+  DG+V +  
Sbjct: 214 LM----SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAA 267

Query: 308 -EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            E   +  L  +A    W+++ K+        +  I   +G++G ++ VA L  V +   
Sbjct: 268 KEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVMLDDK 324

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424
            +    + +    +             DI  GD++LV  AG+ IP++ D++    ER   
Sbjct: 325 KVQRVNIGSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK- 372

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
                                 P   +  +         C  Q + RL   
Sbjct: 373 --------------------PTPPENRFNSLTCYFASDVCQEQFISRLVWL 403


>gi|15828872|ref|NP_326232.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) (fragment)
           [Mycoplasma pulmonis UAB CTIP]
 gi|14089815|emb|CAC13574.1| DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) (FRAGMENT)
           [Mycoplasma pulmonis]
          Length = 367

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 112/397 (28%), Positives = 210/397 (52%), Gaps = 34/397 (8%)

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+++ SL   LG+ ++     I++KF +K   T + DI + +G+TG++T  A+L+ V +
Sbjct: 2   IKLNDLSLYDLLGKTSKFFHHSIAYKFRKKIVMTTIQDIFVTVGKTGLITYNAKLQEVIL 61

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ I  ATLHN +YIK +            I +GD+V +++AGE+IP+VV ++  + + 
Sbjct: 62  NGSKINAATLHNYEYIKNI-----------KINIGDKVYIEKAGEIIPRVVKLVNPKNNH 110

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +   FS    CP C++++    N      +    C   L C  +++++LK+FVS+D   I
Sbjct: 111 N--YFSPIEICPSCKNKLSWSKN------MLNQFCLN-LDCIEKKIQKLKYFVSKDGLEI 161

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           + LG ++++ FF        ++   DI+ L+            +  F + SV  L   I 
Sbjct: 162 QELGGKKIELFFAK----GWVKKIEDIYNLKNNYDDLL----KLEKFQEHSVNVLLHKIE 213

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + + +   + I +LGI+++G ++A+SL K  + ++N  + + +++  N D+         
Sbjct: 214 ESKQVYTWKLIAALGIKNIGKKLAKSLVK--IIFENDQKNLLSLLDFNYDELEKY---DE 268

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            G +  +++ EF+ N  N   ++ L +         E   S+++ENK  + TGTL+K  R
Sbjct: 269 FGSVKIESLKEFFANDENKNLIKFLSENGFEVKLEKEIIQSTKLENKTFLITGTLEKP-R 327

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
              +  + Q G ++S+ +S+K D +IVG NPGSK +K
Sbjct: 328 DFYKNLIVQNGGLISSSISKKLDYLIVGQNPGSKEKK 364


>gi|289679598|ref|ZP_06500488.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           FF5]
          Length = 245

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 94/232 (40%), Positives = 143/232 (61%), Gaps = 2/232 (0%)

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180
           + + + ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L    
Sbjct: 14  EGSKVQYSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKG 73

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239
            P+++EVRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F 
Sbjct: 74  WPDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFC 133

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +GLG+TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+I
Sbjct: 134 CYGLGQTSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEI 193

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           DG+V+KV+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG 
Sbjct: 194 DGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGA 245


>gi|327250774|gb|EGE62476.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli STEC_7v]
          Length = 469

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 101/538 (18%), Positives = 203/538 (37%), Gaps = 82/538 (15%)

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H +    + K+ +   LR ++      W           ++PK+DG  +T+ Y  GK   
Sbjct: 2   HPVAHTGVRKLADKNALRLWMREHNDLW-----------VQPKVDGVAVTLVYRDGKLNK 50

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
           A  RG+G  GED +  +  IP++P+ +S  +     ++GE+++ +   +          +
Sbjct: 51  AISRGNGLKGEDWTQKVSLIPSVPQTVSGPL-VNSTLQGEIFLKREGHIQQ--------Q 101

Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
               N R+  +G+L R   +D    L  FV      +++      + LQ++   GF +  
Sbjct: 102 MGGINARSKVAGLLMRQGNSDTLNSLGVFVWAWPDGTQLM----TDRLQQLTTAGFTLTQ 157

Query: 271 -GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD-EFSLQKQLGERARSPRWMISH 328
              R  N    +    NE     + LP+  DG+V +   E   +  L  +A    W+++ 
Sbjct: 158 TYTRAVNNADEVERIRNEWWK--AKLPFVTDGVVVRAAKEPESRHWLPGQA---EWLVAW 212

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K+        +  I   +G++G ++ VA L PV +    +    + +    +        
Sbjct: 213 KYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKVQRVNIGSVRRWQ-------- 264

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLN 446
                DI  GD++LV  AG+ IP++ +++    ER                         
Sbjct: 265 ---EWDIAPGDQILVSLAGQGIPRIDNVVWRGTERTK---------------------PT 300

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
           P   +  +         C  Q + RL    S+    ++G+G+       ++         
Sbjct: 301 PPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHR------- 353

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----V 562
              IF+       +  +++N  G        L+   N  R     R++ ++GI      +
Sbjct: 354 FEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAAL 410

Query: 563 GAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            A   RS ++   S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 411 NASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 468


>gi|323182437|gb|EFZ67841.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 1357]
          Length = 469

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 97/538 (18%), Positives = 197/538 (36%), Gaps = 82/538 (15%)

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H +    + K+ +   L  ++      W           ++PK+DG  +T+ Y  GK   
Sbjct: 2   HPVAHTGVRKMVDKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNK 50

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
           A  RG+G  GED +  +  I  +P+ +S  +     ++GE+++ +   +          +
Sbjct: 51  AISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ--------Q 101

Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVN 269
               N R   +G++ R + +D    L  FV       ++      + L+++   GF    
Sbjct: 102 MGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM----TDRLKELATAGFTLTQ 157

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISH 328
              R       +    NE     + LP+  DG+V +   E   +  L  +A    W+++ 
Sbjct: 158 RYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRGAKEPESRHWLPGQA---EWLVAW 212

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K+        +  I   +G++G ++ VA L PV +    +    + +    +        
Sbjct: 213 KYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-------- 264

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLN 446
                DI  GD++LV  AG+ IP++ D++    ER                         
Sbjct: 265 ---EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK---------------------PT 300

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
           P   +  +         C  Q + RL    S+    ++G+G+       ++         
Sbjct: 301 PPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQT-------HR 353

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----V 562
              IF+       +  +++N  G        L+   N  R     R++ ++GI      +
Sbjct: 354 FEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAAL 410

Query: 563 GAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            A   RS ++   S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 411 NASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 468


>gi|261886171|ref|ZP_06010210.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 292

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 99/292 (33%), Positives = 147/292 (50%), Gaps = 14/292 (4%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           ++     YY    P+  D EYD L           PDL  S     P N+IGGE+     
Sbjct: 13  LNLWAKAYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSY---SPTNRIGGEILDEFK 69

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           K++H     S+E I++  +L  +I+R        D     F  EPK DG  + + YE G 
Sbjct: 70  KISHIEKMWSMEDIFSDSELVAWISR-------GDKTDCEFFAEPKFDGASLNLLYENGN 122

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            + AA RGDG  GEDV+   + I ++P  L ++  + IE+RGEV I+K+DF  +N E   
Sbjct: 123 LISAATRGDGSVGEDVTNNAKVISSVP--LQIDYKDKIEIRGEVVITKDDFELINIERSK 180

Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
               P ANPRNAA+G LR+L+   +  R L F+  G+G+ S  F K   +++  +R LGF
Sbjct: 181 NSEPPLANPRNAAAGSLRQLDNGIVKQRKLKFYPWGVGENSLKFNK-HSQIMDFVRSLGF 239

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             +N  +       +   Y E+ S+R   P  +DG+V +V++ S   QLG  
Sbjct: 240 LHDNFCKVIRGIDELKIAYKELLSVRELKPILMDGMVIRVNDLSKANQLGYT 291


>gi|218659834|ref|ZP_03515764.1| NAD-dependent DNA ligase LigA [Rhizobium etli IE4771]
          Length = 262

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 116/257 (45%), Positives = 161/257 (62%), Gaps = 4/257 (1%)

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V AA RGDG +GE+V+A IR I  IP  L   +P ++E+RGEVY++K+DFLALN +M A
Sbjct: 1   MVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIRGEVYMAKSDFLALNRQMEA 60

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
            G++ Y NPRN A+G LR+L+     +R L FF +  G+ +E+ A  Q+ M+Q  +  GF
Sbjct: 61  EGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMAEMPADTQFGMVQTFKDWGF 120

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           PVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD   LQ++LG R+RSPRW  
Sbjct: 121 PVNPLMKRLNSVADILTHYDEIGLERPDLDYDIDGVVYKVDSLELQQRLGFRSRSPRWAT 180

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVAR-LEPVNIGGALITNATLHNEDYIK--GLD 383
           +HKF  +QA T +  I+IQ+GRTG LTP  R L      G ++TNATLHNE   +     
Sbjct: 181 AHKFPAEQAFTEVEKIEIQVGRTGALTPGGRGLSRSRSAGVVVTNATLHNEGLHQGHRQQ 240

Query: 384 ASGKVMRGGRDIRVGDR 400
                 R     R GD 
Sbjct: 241 RWSVSGRRSTIFREGDT 257


>gi|218515813|ref|ZP_03512653.1| NAD-dependent DNA ligase LigA [Rhizobium etli 8C-3]
          Length = 216

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 141/212 (66%), Gaps = 3/212 (1%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   FP+L R 
Sbjct: 8   VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P   +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI F
Sbjct: 68  ---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+R
Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
           GEVY++K+DFLALN +M A G++ Y NPRN A
Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTA 216


>gi|310831452|ref|YP_003970095.1| putative NAD-dependent DNA ligase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386636|gb|ADO67496.1| putative NAD-dependent DNA ligase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 651

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 144/725 (19%), Positives = 292/725 (40%), Gaps = 123/725 (16%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  LE+ +      YY  S PI+ D ++D L    D +    P        +  L ++G
Sbjct: 22  KIKELEKLLEQASKSYYNTSNPILTDDQFDIL---LDFLNKRNPK-------STFLKQVG 71

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIE-DLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +     KV       S++KI      L K++ +           S  + L  K+DG  
Sbjct: 72  APIK---NKVELDYYLGSMDKIKPPSTKLEKWLKKY----------SAPYYLSDKLDGIS 118

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---------RVLSLN-IPEIIEVR 188
             + Y+  K +    RG    G D++  I+ +  +P         + L L     +I +R
Sbjct: 119 GLVVYQNNK-IKLFTRGTATEGMDITTLIKYL-NLPSYNVVETKLKKLGLKGHKNLIALR 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE+ +SK++F   N E        + N RN  +G++   +    +++ L+F ++ +    
Sbjct: 177 GEIIMSKSNFSKHNKE--------FKNARNLVAGLVNSKHKKPSLSQDLDFVLYQVVDPV 228

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             F     E +  ++ LGF      ++    + ++S    +K  ++   Y++DG++   +
Sbjct: 229 ITFV----EQMDLIKELGFKNVYYQKEKELNYNVLSQI--LKQRKNNSDYEVDGIIVTNN 282

Query: 308 EFSLQKQLGERARSPRWMISHK--FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +     +L    ++P +  + K    E    + +  ++  I ++G + P   + PV + G
Sbjct: 283 KL---HKL-NIGKNPEFAFAFKELVEETFKESTVKHVEWNISKSGKIMPTVVILPVEMEG 338

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++  T  N  Y+K              +  G ++ + R+G+VIP +V +I        
Sbjct: 339 VTVSRVTAFNAKYVK-----------ENGLGPGSKIQITRSGDVIPYIVKVIKKV----- 382

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                        S     ++ K        R         QQ+ ++  F      + + 
Sbjct: 383 -------------SPEFPKIDYKWTDSGVDIRTLDQSD--EQQIRQIYFFF--KTLDTKR 425

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
            G + +   F++              T+++  +        + G  D S TN Y+ + + 
Sbjct: 426 FGLKLIVKMFENNFN-----------TIEKILKMDKDDFIKLDGVKDKSATNFYNELQRI 474

Query: 546 RNI--SLERFIFS---LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++    LE+ I +   LG  + G++ A+ +   Y     F + I       N+  L    
Sbjct: 475 KSTNFPLEKLILATNSLG-DNFGSKKAKLIFDNYP--DIFNKNIIKNEKIKNEWILKFKN 531

Query: 601 VPLVGDIIAQAIVEFYQN-PRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTL 658
           +P +    A+ I+  +    +NI  +E      + +I +  K VS++ ++  K V TG  
Sbjct: 532 IPGIEQKTAEQIINKWDVLQKNIKWLEKYF---TININKSSKQVSNKNLKYIKWVLTG-- 586

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQ 713
              +  + Q  + ++G  VS  +S+ TDI++V D     NP  K+ KA+ LG+KI+ + +
Sbjct: 587 --FRDKELQNKIEEMGGTVSNSVSKNTDIVVVKDSSVLNNPTGKVLKAKDLGIKIIEKSK 644

Query: 714 FLFLL 718
              L+
Sbjct: 645 VSKLI 649


>gi|48374262|gb|AAT41954.1| putative DNA ligase [Fremyella diplosiphon Fd33]
          Length = 268

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 143/294 (48%), Gaps = 31/294 (10%)

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            PS CP+C   VVR+L        A  RC    +C+A     ++H+VSRDA +I+G+G++
Sbjct: 1   MPSNCPVCGQPVVRELGE------AVTRCVNA-SCAAILKGAIEHWVSRDALDIKGMGEK 53

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +            +   AD++ L   +     ++         S   L D+I + +N  
Sbjct: 54  LVHQLVDK----GLVHSVADLYDLTEEKLYVLERMGQ------KSAQKLIDAIAQSKNQP 103

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ LGIRHVG+  A+ L + +   +   Q   + IA           +  +G  IA
Sbjct: 104 WSRVLYGLGIRHVGSVNAQLLTEKFSDVEKITQARQSDIAG----------IYGIGVEIA 153

Query: 610 QAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHK 665
           +++ +++Q   N   +   +A   +++ S        S+    +K  V TGTL  ++R +
Sbjct: 154 ESVHQWFQIHANQTLISRLQAAGLQLANSAETSTITDSNPQFTDKTFVVTGTLPTLKRDE 213

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+  + + G  V+  +S+KTD ++VG++ GSKL KA+ LG+  + E Q L +L+
Sbjct: 214 AKALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLAKAEALGITQLTEAQLLQMLE 267


>gi|183597041|ref|ZP_02958534.1| hypothetical protein PROSTU_00276 [Providencia stuartii ATCC 25827]
 gi|188023700|gb|EDU61740.1| hypothetical protein PROSTU_00276 [Providencia stuartii ATCC 25827]
          Length = 570

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 120/607 (19%), Positives = 213/607 (35%), Gaps = 89/607 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
              LS ++ +KE   L +++   +  Y       + D  YD L                 
Sbjct: 41  CSTLSQDELKKESQKLGEQLQQWNRLYRLSGNSPVTDETYDQLLNTWQQWQKC--QNLSG 98

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           + P  P++     +      V H I    L+K+ N  D+ K+I      W          
Sbjct: 99  QLP--PIH-----LPPHSRTVKHPIVHTGLKKL-NEVDIGKWIDTREEVW---------- 140

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            L+PK+DG  I++ Y++GK V    RG+G  G +       IP IP+ L  + P++I ++
Sbjct: 141 -LQPKVDGVAISLVYQQGKLVSMISRGNGIEGLEWRDKADFIPAIPKQLPTSQPQLI-LQ 198

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GE++    D         A G     N RN  +G L R + P      ++ F+    +  
Sbjct: 199 GELFWRLKDH-----RQQASGG---VNARNQVAGWLMRKSKPVTPEANIDVFIWAWPEGV 250

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E  +++  LGFP+        T    V  +      +  +P+  DG+V K  
Sbjct: 251 GKA----EEQWRQLANLGFPLTQQYSHKVTTMAQVKKWQSYY-YQQPMPFATDGIVLK-- 303

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F   +    +     W ++ K    + ++++ D+  ++GRTG ++ VA +EPV +    
Sbjct: 304 SFPTPRVAAWQVNHNSWSVAWKHPYTRIASKVTDLHFRVGRTGAVSVVAEIEPVELDSKK 363

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++   L +    +            +D+ VGD + V  AG  IPK+  +I        Q 
Sbjct: 364 VSRLYLGSLKSWQK-----------KDLLVGDTIQVALAGHGIPKLESVIWRL-----QQ 407

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            ++P      Q   +                     C  Q + RL          I+G+ 
Sbjct: 408 RTYPDLSQFKQFHALSCFVM-------------TPQCEQQFVARLNWLG--KQLKIKGIS 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +                R  A+ + L +   T  +               + +       
Sbjct: 453 EATW-------------REWAEHYHLNK-LTTWLSPSWQTSLPNTKKTKKIIEQFRLVGQ 498

Query: 548 ISLERFIFSLGIR----HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             L  ++  LGI     H+      SL    L  +     I      N   WLS   +  
Sbjct: 499 QPLMNWLKGLGIPLKDKHLSLITELSLLDNTLFLEGLGLSIIQKTKLNQ--WLSTPDIKE 556

Query: 604 VGDIIAQ 610
           +  +I +
Sbjct: 557 IFQVIDE 563


>gi|281414409|ref|ZP_06246151.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
          Length = 248

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/241 (36%), Positives = 128/241 (53%), Gaps = 6/241 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
              + +     R+E   L + +      YYQ   P I D+EYDAL RR + +    P+L 
Sbjct: 11  PDPQDIPAADLREEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELV 70

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-QKKDDNS 125
            +   + P  ++GGE++ +   V H     SLE ++++E+L  +  R  +   Q +   +
Sbjct: 71  SN---DSPTQEVGGEVSEAFAPVRHGARMYSLEDVFSVEELEVWFRRAAQALTQVRPGVA 127

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEI 184
             + +E KIDG  + +RY  G+ V AA RGDG +GEDV+A +R I  IP  L     P  
Sbjct: 128 PRWLVEVKIDGLAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAE 187

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243
            EVRGEV++S   F  LN      G+ P+ANPRNAA+G LR+ +P     R L  FVHG+
Sbjct: 188 FEVRGEVFMSSAAFAELNARRAEEGQPPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGI 247

Query: 244 G 244
           G
Sbjct: 248 G 248


>gi|213622411|ref|ZP_03375194.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 445

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 98/504 (19%), Positives = 182/504 (36%), Gaps = 74/504 (14%)

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     
Sbjct: 6   ELWVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAV 64

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           ++GE+++ +   +          R    N R+ A+G+L R +       L  F+      
Sbjct: 65  LQGEIFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWAWPDG 116

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                    E L ++   GF +      A      +        +  S LP+  DG+V +
Sbjct: 117 PANMP----ERLSQLAKAGFSLTKKYSLAVKDASEVERARQSWLT--SALPFVTDGVVIR 170

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           + +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +  
Sbjct: 171 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 228

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +    + +    +             DI  GD++LV  AG+ IP++ +++   R    
Sbjct: 229 KRVQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSR---- 273

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT-GGLACSAQQLERLKHFVSRDAFNIE 484
                            R      G    +  C      C  Q + RL    SR A  ++
Sbjct: 274 ----------------ERSKPVPPGSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLD 317

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       ++            IF+       ++ +I N  G        ++   N 
Sbjct: 318 GMGEASWRALHQTHR-------FEHIFSWLA---LTSAQIANTPGVAKGKSEQIWRQFNL 367

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R  S  R+I ++ I       A   A    S++                     ++P  
Sbjct: 368 ARRQSFTRWIMAMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPAT 414

Query: 605 GDIIAQAIVEFYQNPRNICAVEAL 628
           G+  A  ++++ +N   I A+   
Sbjct: 415 GERRAGRVIDW-RNNPQINALSRW 437


>gi|317968248|ref|ZP_07969638.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0205]
          Length = 239

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 5/228 (2%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +   S L   ++     YY    P++ D  YD L R    + +A   L      + P  +
Sbjct: 9   QARASELRDLLNRAAHAYYVLDAPVMEDPVYDRLYRELLDLENADASLI---SADSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG        V H I  LSL+  +N ++L  +  R+ +   ++   ++    E KIDG 
Sbjct: 66  VGGAPAAGFSSVRHRIGLLSLDNAFNTDELEAWYGRLLKVLDREAGTALPMVGELKIDGN 125

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            + + YE G  V AA RGDG  GE+++A +R I ++P  L L N P  +EVRGE  I   
Sbjct: 126 ALALSYENGVLVRAATRGDGEQGEEITANVRTIASVPLRLQLENPPAWLEVRGEALIPDG 185

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243
            F A+N E  A G   +ANPRNA +G LR+L+P  +  R L+FF + L
Sbjct: 186 TFAAINSERQARGEALFANPRNACAGTLRQLDPKVVAARKLDFFAYTL 233


>gi|330722383|gb|EGH00233.1| DNA ligase [gamma proteobacterium IMCC2047]
          Length = 258

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 114/213 (53%), Gaps = 9/213 (4%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    R+E+ +L  +++ H+  YY   +P I D EYD L R+   I    P+L      
Sbjct: 1   MTSAPLRQEVEALRAQLNQHNYRYYVLDEPSIPDVEYDRLLRQLQTIEAQHPELISQ--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +   +  +VTH +  LSL+  +N +++R F  RI    +  D + + F  E
Sbjct: 58  DSPTQRVGAQPLTAFGEVTHDMRMLSLDNAFNDDEMRDFERRIKDRLK--DTSELEFVCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  +++ YE G FV  A RGDG +GE+++  +R +P+IP  L     PE +EVRGE
Sbjct: 116 PKLDGIAVSLLYENGIFVRGATRGDGQTGENITQNLRTVPSIPLTLMGTGWPERLEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPY---ANPRNAA 220
           VY+ K  F A N + +   + P    A PR   
Sbjct: 176 VYMPKAGFDAFNKQGLLTVKSPLLIRAMPRQVV 208


>gi|255018737|ref|ZP_05290863.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL F2-515]
          Length = 223

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 137/236 (58%), Gaps = 14/236 (5%)

Query: 174 PRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
           P  L  +    IEVRGE ++ K  F  LN+     G+  +ANPRNAA+G LR+L+     
Sbjct: 1   PMKLQKDY--SIEVRGEAFMPKRSFQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAA 58

Query: 234 -RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR 292
            R L+ F++ +    E+  +     L+ +  LG  VN   R  ++   + +Y +E    R
Sbjct: 59  SRNLDIFLYAVADFGEMGVETHSAGLEMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKR 118

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
           + L YDIDG+V K++    Q+Q+G   +SPRW I++KF  ++  T+LLDI++ +GRTG++
Sbjct: 119 ADLAYDIDGIVLKLNNLEQQRQMGTTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVI 178

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TP A LEPV + G  ++ A+LHNED I             +DIR+GD VL+K+AG+
Sbjct: 179 TPTAVLEPVRVAGTTVSRASLHNEDLIT-----------EKDIRIGDTVLIKKAGD 223


>gi|269469037|gb|EEZ80601.1| NAD-dependent DNA ligase [uncultured SUP05 cluster bacterium]
          Length = 398

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 108/431 (25%), Positives = 198/431 (45%), Gaps = 57/431 (13%)

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + +D+DG+V++V   +L+  +G   +  RW I+ K  + +A  ++L +  Q+GRTG +TP
Sbjct: 19  VDFDVDGVVFEVTNENLKNYMGANRKFHRWQIAFKENKDKAQVKVLSVTPQVGRTGKITP 78

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA LEP  + GA I  AT H+   +K            + +  G  + + R+G VIPK+ 
Sbjct: 79  VAELEPTLLSGATIVRATGHHYGLVK-----------EQGLGAGSVIELTRSGLVIPKIN 127

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            ++ +       P   P  CP C   +  + +           C     C AQ + ++++
Sbjct: 128 QVLKSA------PVKIPKLCPSCSEALEWESD--------FLMCVNHDLCPAQVIGKMEY 173

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F    A N +G G   ++  ++       IR  + I+ L     +         GFGD +
Sbjct: 174 FFKILANN-DGFGIATIEKLYEHG-----IRKISQIYALSASDLSDM-------GFGDKT 220

Query: 535 VTNLYDSINKR--RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            TNL + + +     I   RF+ + G+  +G     +L K Y   + F   +  I A   
Sbjct: 221 STNLVNQLKRSTNEQIEDWRFLAAFGVVRMGTGNCENLLKSYPLNEIFELNLEQISA--- 277

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFY---QNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
                   +    ++ AQ IV      Q   N+ +      E++ S+ ++ +  +  +  
Sbjct: 278 --------IDGFAELTAQMIVTGLKIIQTEFNLLSRYRFNLEIT-SLQKNLEEFTHVLFG 328

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKI 708
           KK+VFTG +Q   R K +++   +G  +   +S KTD ++VG+  G  K+E A++ GVK+
Sbjct: 329 KKIVFTGKMQG-SRDKMKKHAKSIGIKILTSVSAKTDYLVVGEKVGQKKIESAKKFGVKV 387

Query: 709 MNEEQFLFLLQ 719
           ++EE +   ++
Sbjct: 388 LSEEDYQATIE 398


>gi|268592261|ref|ZP_06126482.1| DNA ligase B [Providencia rettgeri DSM 1131]
 gi|291312038|gb|EFE52491.1| DNA ligase B [Providencia rettgeri DSM 1131]
          Length = 574

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 111/606 (18%), Positives = 212/606 (34%), Gaps = 98/606 (16%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALK------RRCDAIAHA 61
           P E  + +   +E   L +++   +  Y       I D  YD L       +RC  +   
Sbjct: 41  PCEKQNSKIISQESHRLGKQLQLWNQAYRLAGSSSISDEAYDQLFNLWRSLQRCQQLPEE 100

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
            P++   E     +               H IP   L+K+ N  ++  +I      W   
Sbjct: 101 LPEVLLPEKSQLTM---------------HPIPHTGLKKL-NELEVYSWIETRKNIW--- 141

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
                   L+PK+DG  +T+ Y+ GK +    RG+   G +  A    IP IP+ +    
Sbjct: 142 --------LQPKVDGVAVTLVYKNGKLISMISRGNSVEGIEWRAKADFIPAIPKQIK--Y 191

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFV 240
             ++ ++GE++   N  +          +    N RN  +G L R N PT +   +  F+
Sbjct: 192 SGMLVLQGELFWRMNGHIQ--------AKSGGVNARNKIAGWLMRKNEPTALEENIGIFI 243

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
                  +   K Q   L  +  +GFP+                  E    +  LP+  D
Sbjct: 244 WAWP-AGDANPKTQ---LTLLSEIGFPLAEQYSHKIENKIQAKQLREYY-YQGQLPFATD 298

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K   F     L  +++   W I+ K+  +   + +  +   IGRTG ++ VA + P
Sbjct: 299 GIVLK--NFPAPAALAWQSKQNSWAIAWKYPLRSVLSEVTKLQFNIGRTGRISVVASITP 356

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           +NI    I+     +    +            RD+ VGD++LV  +G   PK+ D+I   
Sbjct: 357 INIDSKTISKVNAGSLSSWEK-----------RDLLVGDKILVSLSGLGSPKIEDVIWRR 405

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
                +   +P    + Q   +  L                  CS Q + RL        
Sbjct: 406 -----EEREYPETSTLKQFHSLSCLTYTE-------------VCSQQFVARLTWLG--KQ 445

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
             + G+ +     + ++ +      +      L  + Q+  +K              L  
Sbjct: 446 LRMRGISEATWRQWVENHN------LTRLTTWLSEQWQSDLSKG--------KKHQMLVK 491

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARS--LAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            +   ++  +  ++  L I     ++ +   +   Y      +  +  +      +WL+ 
Sbjct: 492 QLKMAKDQPISLWLKGLAIPLTKLQVGKVTDIGMLYDPSWVNSINLTKLQKKKLANWLAE 551

Query: 599 IRVPLV 604
             +  +
Sbjct: 552 PEIESI 557


>gi|326392616|ref|ZP_08213952.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200]
 gi|325991342|gb|EGD49998.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200]
          Length = 210

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 10/197 (5%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           +YH+  YY   +P I D EYD L R    +   +P+    + P+ P  ++GGE       
Sbjct: 20  NYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---KTPDSPSQRVGGEPLKEFEP 76

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
            TH +P LSL   ++  +LR F  R+           + + +E KIDG  + + YE G F
Sbjct: 77  FTHVVPMLSLANAFSEGELRDFDRRVRE-----AVGDVEYVVELKIDGLSVELIYENGIF 131

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
              + RGDG  GE+V+  ++ I +IP  L  ++   + VRGEV++ +  F  LN+E   +
Sbjct: 132 TVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDV--SLVVRGEVFMPRTSFEKLNEEREKI 189

Query: 209 GRKPYANPRNAASGILR 225
             KP+   +   S   +
Sbjct: 190 RGKPFCKSQKCCSRFFK 206


>gi|282599848|ref|ZP_05972113.2| NAD-dependent DNA ligase adenylation domain protein [Providencia
           rustigianii DSM 4541]
 gi|282567376|gb|EFB72911.1| NAD-dependent DNA ligase adenylation domain protein [Providencia
           rustigianii DSM 4541]
          Length = 557

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 107/589 (18%), Positives = 210/589 (35%), Gaps = 93/589 (15%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
              L  ++   +  Y       I D  YD L  +          L+ S+     L ++  
Sbjct: 34  HQRLGNQLQEWNKNYLVDGFSPINDEVYDQLLSKWQQRQRC---LSLSDS----LPQVPL 86

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +   L  V H +P   L+K  N+ ++  +I +    W           L+PK+DG  ++
Sbjct: 87  PILTPL--VKHPLPHTGLKK-QNLNEITTWIAKRKEIW-----------LQPKVDGVAVS 132

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y+ G+ V    RG+G  G +       I  +P+V+ +   + + ++GE++        
Sbjct: 133 LVYDNGQLVSLISRGNGVEGLEWRKKADFILDLPKVIPIK--QRVILQGELFW------K 184

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           LN+ +         N R+  +G L R   P  I   +  F+             Q   L 
Sbjct: 185 LNNHVQKQLG--GLNARSKVAGWLMRKKLPEKIEDNIGIFIWAWPDGDLQ----QEVQLS 238

Query: 260 KMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           ++  +GF ++     Q  +   I+    +  S    LP+  DG+V K   F        +
Sbjct: 239 RLSEIGFDLSKRYSHQVTSIEQIIQRQEDYFST--PLPFATDGIVLK--SFPTPPSAAWQ 294

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           +    W I+ K+  +   + +  +   +GRTGI+  VA ++PV +    +++  L + + 
Sbjct: 295 SNQNSWAIAWKYPLQNIISEITGLKFGVGRTGIVNVVASIKPVTLDAKQVSHVNLGSLNS 354

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
            K            +D+ VGD + +  AG  IPKV  +I                     
Sbjct: 355 WKK-----------KDLLVGDHIQLTLAGHGIPKVEQVIWR------------------- 384

Query: 439 SRVVRDLNPKTGKLVAAHRCTG---GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
             V     P+T  L   +R +     + C  Q + RL          I+G+G++    + 
Sbjct: 385 --VAHRDYPETMLLEQFNRWSCFSYSIECLPQFVARLTWLG--KQLGIKGVGEKTWQQWA 440

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           ++   +  +        L    Q    K          +     + + K  +  L  ++ 
Sbjct: 441 ENYGLSQLLE------WLSPSWQGQLPKT--------KTNLKHLEQLQKVADQPLAVWLK 486

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            L I  +     + +    + Y+    +   +       +   I V  +
Sbjct: 487 GLDIP-LSNTEIKKIDTISMLYEPTIIKYLKLSDKREQQFKHWIEVTEI 534


>gi|212711586|ref|ZP_03319714.1| hypothetical protein PROVALCAL_02661 [Providencia alcalifaciens DSM
           30120]
 gi|212685688|gb|EEB45216.1| hypothetical protein PROVALCAL_02661 [Providencia alcalifaciens DSM
           30120]
          Length = 564

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 109/586 (18%), Positives = 214/586 (36%), Gaps = 91/586 (15%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKIGGE 81
            L +++   D  Y       + D  YD +  +            R   P  P   ++   
Sbjct: 52  RLGEQLQEWDRQYQIEGVSEVSDEVYDQILAQWRRGQRCLNLPDRLPQPVQPNTERL--- 108

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
                  V H IP   L+K+   +++  ++   +  W           L+PK+DG  +T+
Sbjct: 109 -------VKHPIPHTGLKKL-EFKEIAPWLESRHEVW-----------LQPKVDGVAVTL 149

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            YE G  V    RGDG  G +       I  IP+ +S+   + I ++GE++        L
Sbjct: 150 HYENGHLVSMISRGDGSKGLNWREKADFIQGIPKTISIK--QSIVLQGELFW------KL 201

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           N+ +  +      N R+  +G L R + P  +T  +  F+      S        + L +
Sbjct: 202 NEHVQKIDG--GQNARSKVAGWLMRKDMPAQVTDDIGVFIWSWPDNSTPM----SQQLSE 255

Query: 261 MRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           +  LGF +             I  + +   SI  ++P+  DG+V K   F        RA
Sbjct: 256 LAMLGFDLAQRYSHPIVESQSIAQWRDHYYSI--SMPFATDGVVLK--SFPTPSSSAWRA 311

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
               W I+ K+  K   + ++D+  ++GR+G++  +A +EPV I    ++   L + +  
Sbjct: 312 NQNSWSIAWKYPLKSIVSDVVDLTFRVGRSGVVNVIANIEPVRIDDKKVSKIRLGSLNSW 371

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           K            +D+ VGD++ +  +G   P +  +I  ++                  
Sbjct: 372 K-----------QKDVLVGDKIQLTLSGHGAPLMEKVIWRQKPR---------------- 404

Query: 440 RVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
              + LN    +   A  C +    C++Q + RL         NI G+G++    + +  
Sbjct: 405 ---QYLNTLPLENFHALSCLSYSTDCASQFVARLTWLG--KQLNIRGVGEKTWMVWVEKY 459

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             +        +  L    Q    K +           N  + + + ++     ++  LG
Sbjct: 460 GLSEL------LGWLSPDWQNRLPKTQQ--------TANALEQLQQAQHQLTANWLKGLG 505

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           I     ++ +  A   LS     +++  +           +  P +
Sbjct: 506 IPLKSEQLEKIAAITTLSEPEQIEKM-AVSETRKQALQQWLAAPEI 550


>gi|218509214|ref|ZP_03507092.1| NAD-dependent DNA ligase LigA [Rhizobium etli Brasil 5]
          Length = 202

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 93/200 (46%), Positives = 132/200 (66%), Gaps = 3/200 (1%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
           +EI++HD  Y    +  I D++YDALKRR DA+   FP+L R    + P   +G   +++
Sbjct: 6   KEIAHHDALYQGKDQREISDADYDALKRRNDALEVRFPELIRE---DSPSRHVGAAPSVT 62

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
              V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI FT EPKIDG  ++IRYE 
Sbjct: 63  FSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAFTAEPKIDGLSMSIRYEN 122

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+RGEVY++K+DFLALN +M
Sbjct: 123 GRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIRGEVYMAKSDFLALNRQM 182

Query: 206 IAVGRKPYANPRNAASGILR 225
            A G++ Y NPRN A+G LR
Sbjct: 183 EAEGKQTYVNPRNTAAGSLR 202


>gi|311977685|ref|YP_003986805.1| DNA ligase [Acanthamoeba polyphaga mimivirus]
 gi|82000023|sp|Q5UPZ0|DNLJ_MIMIV RecName: Full=DNA ligase; AltName: Full=NAD-dependent DNA ligase;
           AltName: Full=Polydeoxyribonucleotide synthase [NAD+]
 gi|55416925|gb|AAV50575.1| NAD-dependent DNA ligase [Acanthamoeba polyphaga mimivirus]
 gi|308204745|gb|ADO18546.1| DNA ligase [Acanthamoeba polyphaga mimivirus]
          Length = 636

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 129/713 (18%), Positives = 258/713 (36%), Gaps = 113/713 (15%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL-NKIGG 80
           + +E+ +S   + Y+     +I D EYD L  R   +           +P+  +  ++G 
Sbjct: 23  TDIEEALSVSSEYYHNTGTSLISDQEYDILMDRLKEL-----------NPSSKIFAQVGA 71

Query: 81  EMNLSLFKVTHSIPTLSLEKIW-NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +     KV       S+ KI  + + + K++             S  + +  K+DG   
Sbjct: 72  PV--KGKKVKLPFWMGSMNKIKADEKAVNKWLNEY----------SGPYVISDKLDGISC 119

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            +  +  K      RGDG  G+D++  +  I  I   L   I + I +RGE+ +SK +F 
Sbjct: 120 LLTIKNNK-TKLYTRGDGTYGQDITHLLGLI-NIDIGLLEEIDQDIAIRGELIMSKKNFE 177

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT---DITRYLNFFVHGLGKTSEIFAKGQYE 256
              +          AN RN   GI+     +   D    ++   + + K ++        
Sbjct: 178 KYQE--------IMANARNMVGGIVNSKPESVNKDHAADVDLIFYEVIKPNDKL----SR 225

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++  G  V        TF  +    + +   +    Y+IDG++   +   ++   G
Sbjct: 226 QLKILKEWGLKVV-YYNIYKTFD-VNILESVLSERKKKSGYEIDGIIVTDNNKHVRNISG 283

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                P +  + K       T +  +     + G+L P  + + V +    +   T  N 
Sbjct: 284 N----PSYSFAFKGDTPTIDTVVKRVIWTPSKDGVLVPRIKFKKVRLSNVDLEYTTGFNA 339

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
            YI               I  G  + V R+G+VIP +  ++   + PD     +     +
Sbjct: 340 KYIVD-----------NKIGSGAIINVVRSGDVIPYITHVVKPAKKPDLPNIEY-----V 383

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR-DAFNI-EGLGKQQLDFF 494
                V  +                       ++RL  F+    A NI EG+  + ++  
Sbjct: 384 WDKNGVNIILADINDNETV------------IIKRLTKFMRNIGAENISEGITTRLVEAG 431

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI-SLERF 553
           F                T+ +    +      I GF +     +Y+++    +   +   
Sbjct: 432 FD---------------TIPKIINMTEEDFLTIDGFQERLAEKIYNNLQNSLDNLDILTL 476

Query: 554 IFSLGI--RHVGAEIARSLAKYYLSYQN-FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           + +  I  R  G +  + +   Y +  N + +E +NI      D      +         
Sbjct: 477 MDASNIFGRGFGTKKFKKILDVYPNIVNQYTKETDNIWRKKLLDIEGFDTI--------- 527

Query: 611 AIVEFYQNPRN-ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            + +F     N     + + K ++      E N     +N+ +VFTG     +    Q++
Sbjct: 528 TVNKFLGEMPNFQKFYKVINKTITIKPYISEVNSEGIFQNQTVVFTG----FRNADWQKF 583

Query: 670 VTQLGAVVSAILSRKTDIIIV--GDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G  VS  +S+ T +++   G+   +K +KA+QLG+K M +  F    ++
Sbjct: 584 IENEGGKVSGSVSKNTSLLVYNDGEESSAKYQKAKQLGIKTMTKSSFSKKFEK 636


>gi|126669208|ref|ZP_01740125.1| hypothetical protein MELB17_00020 [Marinobacter sp. ELB17]
 gi|126626327|gb|EAZ97005.1| hypothetical protein MELB17_00020 [Marinobacter sp. ELB17]
          Length = 490

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 121/556 (21%), Positives = 215/556 (38%), Gaps = 96/556 (17%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
             +E+ +   +D Y      II DS+YDAL              AR +  +  L ++  E
Sbjct: 19  RQIEESLERANDAYRNTDDSIISDSDYDALIDEL----------ARRDPGHALLTEVESE 68

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFTLEPKIDGTMIT 140
            +    KV H IP LS EK+    +L  ++ R+    Q       +  ++  K+DG    
Sbjct: 69  ADFGAGKVRHQIPMLSTEKVKTDSELSAWVRRVESAAQNIGIRTPVLLSVTAKLDGMAGR 128

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           +  + G     A RGDG +G +++        +P+++   + +     GE+ + ++ F  
Sbjct: 129 L--KDGVL---ASRGDGLTGNNITH------ILPKLVVHGVGD-----GELVMIQSYF-- 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
                     + + +PRN  +G +    P                          + L  
Sbjct: 171 -----DEHLSEEFKHPRNVVTGAVGADTPRPAA---------------------MKALND 204

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-STLPYDIDGLVYKVDEFSLQKQLGERA 319
                       R  +    IV+   E++       PY  DGLV  V+   L+K+LG   
Sbjct: 205 HSIHFVSFTTLTRIDSRTDTIVAQLPEIREYLLGNTPYPTDGLVLAVESPELRKELGSTG 264

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
               WM++ K   + A+T ++ +  QIG+TG LTPV +L+ V + GA+I N T HN   +
Sbjct: 265 HHHNWMVAAKTVGETATTAVVGVQWQIGKTGRLTPVIQLKKVTLSGAVIANVTGHNAGKV 324

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           + +            I VG    + R+GE+IP +V              S P+ CP C  
Sbjct: 325 EEM-----------GIDVGAMATITRSGEIIPFLVSATPAPNGA-----SLPTHCPACTE 368

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            + R  +           C     C  ++  RL HF      +I+  G    D    +  
Sbjct: 369 HLKRRGDFLV--------CINN-ECEGRRHARLHHFF-NIIGSIDLFGPVACDKLIAAG- 417

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE--RFIFSL 557
               +R   ++F +   +  +        GFG     NL   +   +   ++  R + ++
Sbjct: 418 ----VRSIQEVFAITAAEFEAM-------GFGPGQSANLVAELEAAKTRPVDDFRVLAAM 466

Query: 558 GIRHVGAEIARSLAKY 573
           GI ++G   ++ L ++
Sbjct: 467 GISNLGRGDSKKLLRH 482


>gi|254673677|emb|CBA09272.1| DNA ligase [Neisseria meningitidis alpha275]
          Length = 414

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 157/388 (40%), Gaps = 105/388 (27%)

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P+  P+ CPIC+S + R+         A  RC+GG+ C AQ+ + L HF SR A +I+G
Sbjct: 36  KPYRLPTHCPICRSEIEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDG 89

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTSTTKIENIL------------ 528
           LG++Q++     +     +R  AD++     TLQ+ ++T+   +                
Sbjct: 90  LGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTVAESDQMPSEGSSVGAS 145

Query: 529 ----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE- 583
                       N+   I   +   L RF+F+LGIRHVG   A++LA+ + + +   +  
Sbjct: 146 GKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAP 205

Query: 584 ------------------------------INNIIAHNNDDWLSLIRVP----------- 602
                                         I+ ++A         + +P           
Sbjct: 206 EPVLACLPDIGTVVARSIAHFFAQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAEPQRWI 265

Query: 603 ------LVGDIIAQAIVE---------------------FYQNPRNICAVEALLKEVSPS 635
                  + +  AQA+ E                     +   P+N   +E L    +  
Sbjct: 266 ARLPGFKISENKAQALWELAGKSIEGLQTDKSLPADWQAWRSEPQNAALLENLKTFFAQM 325

Query: 636 IGRHE-----KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
               E       ++  +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ 
Sbjct: 326 PSEDEAAQGSDGINEAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVA 385

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G+  GSKLEKA  LGV +++E + L LL
Sbjct: 386 GEAAGSKLEKANALGVSVLSEAELLTLL 413


>gi|257439787|ref|ZP_05615542.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
 gi|257197807|gb|EEU96091.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
          Length = 209

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 112/220 (50%), Gaps = 13/220 (5%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +EQARK    L   I  ++  YY    P + D EYDAL R   A+   FP L  +   
Sbjct: 1   MELEQARKRAEELRVIIERNNRLYYDQDAPELEDFEYDALTRELKALEAEFPQLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  K+GG  +    KVTH++   SL   ++ ++LR F  R+             + +E
Sbjct: 58  NSPTQKVGGTPSGRFAKVTHAVKMESLLDAFSFDELRDFDRRVRE-----AGIEPEYVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG   ++ YE G  V A+ RGDG  GEDV+A ++AI  IP+ L  N PE +EVRGEV
Sbjct: 113 IKIDGLSCSLEYENGVLVRASTRGDGVVGEDVTANVKAIKRIPKTLK-NAPEYLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD 231
           Y+  + F  L  E    G    A P   ++   RR++ ++
Sbjct: 172 YMPHDAFQHLCAEQELQG----AAPLQKSAQCCRRVSASE 207


>gi|148989162|ref|ZP_01820552.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73]
 gi|147925385|gb|EDK76463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73]
          Length = 251

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 133/268 (49%), Gaps = 22/268 (8%)

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
           +   A RC     C AQ +E L HF SRDA NI GLG   ++  F +      ++  ADI
Sbjct: 5   EDEVALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAAN----LVKDVADI 59

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           + LQ              G  + S   LY +I   +  S E+ +F LGIRHVG++ ++ L
Sbjct: 60  YRLQEEDFLLLE------GVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLL 113

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA-LL 629
            +Y+ S +N  Q           D   +  +  +G +IA+++  ++    +   +     
Sbjct: 114 LQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFAAEGSEILLRELKE 163

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
             V+ +         + +    +V TG L++++R +A+  +  LGA V+  +S+KTD+++
Sbjct: 164 TGVNLNYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTDLVV 223

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 224 VGADAGSKLQKAQELGIQVRDEAWLESL 251


>gi|213421985|ref|ZP_03355051.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 186

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 84/203 (41%), Positives = 127/203 (62%), Gaps = 21/203 (10%)

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++NATLHN D I+ 
Sbjct: 1   PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 60

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
           L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  FP+ CP+C S V
Sbjct: 61  L-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDV 109

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + +D   + E   
Sbjct: 110 ERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVERE--- 160

Query: 502 FSIRIPADIFTLQRRQQTSTTKI 524
             +  PAD+F L   + T   ++
Sbjct: 161 -YVHTPADLFRLTAGKLTGLDRM 182


>gi|261884935|ref|ZP_06008974.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 195

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/189 (43%), Positives = 114/189 (60%), Gaps = 4/189 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYIS 194
           EVRGEVY+ 
Sbjct: 181 EVRGEVYMH 189


>gi|82913524|ref|XP_728678.1| NAD-dependent DNA ligase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485151|gb|EAA20243.1| DNA ligase, NAD-dependent, putative [Plasmodium yoelii yoelii]
          Length = 354

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 11/187 (5%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R ++ + A  +E+ARK    L +EI +H+  YY+   P+I D+EYD L     AI   +P
Sbjct: 178 RTVVSVPAEVVEKARK----LREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYP 233

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +L     P+ P  ++G     +  +V H +P LSLE  ++ EDL  F  R+ +   +   
Sbjct: 234 ELV---TPDSPTQRVGAPPVEAFTEVRHEVPMLSLENAFSEEDLTAFDRRVRKELSR--- 287

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIP 182
           +++ +  EPK+DG  + + Y+ G  V AA RGDG  GEDV+  +RA+  IP  L   + P
Sbjct: 288 DTLEYVAEPKLDGLAVNLLYQDGVLVRAATRGDGEVGEDVTHNVRAVRAIPLRLKGEDFP 347

Query: 183 EIIEVRG 189
           +  E  G
Sbjct: 348 DRFEGAG 354


>gi|291335083|gb|ADD94712.1| NAD dependent DNA ligase [uncultured phage MedDCM-OCT-S09-C23]
          Length = 717

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 142/749 (18%), Positives = 270/749 (36%), Gaps = 118/749 (15%)

Query: 24  LEQEISYHDDCYYQYSKPII----LDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           L + ++  D  YYQ   P I     D+ YD +          +      +        +G
Sbjct: 25  LREVLACFDRLYYQ---PTIDEGIPDAIYDQVV-------EIYDSKFGKKKTYHQKKGVG 74

Query: 80  GEMNLSLFK---VTHSIPTLSLEKIWN------IEDLRKF------ITRIYRFWQKKDDN 124
            +   S      V       ++ K ++       + L K+        + +  W+KK   
Sbjct: 75  AKGVASTDTRKDVKLPYYMGTVNK-FSAMMVDADKGLSKWRSKPVNYEKKFNAWKKKYPK 133

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAAL---RGDGHSGEDVSACIRAIPT----IPRVL 177
              +T+E K DG    + YEK           RG G +G+D+S  I+ +      IP   
Sbjct: 134 G-PYTIEGKADGISCLLIYEKKNGTIKRTIYSRGTGKTGKDLSRYIQNLRDGFNLIPSGE 192

Query: 178 SLNIP--EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TR 234
             + P    I +RGE+ +    +              ++NPRN   G + +   + + TR
Sbjct: 193 DFDFPPENKIVIRGELVMRYRVWKR-------KYSDDFSNPRNIVGGFVTKKTNSGVSTR 245

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSY-YNEMKSIRS 293
            + F  +          + +++ ++ ++ +GF      +            +  +KS R 
Sbjct: 246 DIEFVSYEKLVPRN---ETRFDQIKTLKRMGFATVEVSQLTKNSELTEKNLFKILKSFRK 302

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRW----MISHKFAEKQASTRLLDIDIQIGRT 349
             PY+IDGLV   D+         R  S +       ++K   + A   ++ ++     T
Sbjct: 303 KSPYEIDGLVVFADDK-------VRKVSDKEVLDSAFAYKVNAQTAIAEVVGVEWSSSTT 355

Query: 350 GILTPVARLEPVNIG---------GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
             L PV   +PV IG         GAL   AT  N ++IK              I  G +
Sbjct: 356 NALKPVVVYKPVTIGRVMEDGSIVGALYRRATAFNANFIKK-----------NKIGPGAK 404

Query: 401 VLVKRAGEVIPKVVDIIVNERH--PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           +L+ R+G+VIP +  I+   +   P+    + P +       +  +      +       
Sbjct: 405 LLIVRSGDVIPHIEQILKQGKPDLPNKARAAQPKYNYKGHPEINFEWGDGKNRRSKLDIF 464

Query: 459 TGGLACSAQQLERLKHFVS---RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR 515
              +   A+  +    F     +   NI+G+ K+ L   F+    +        I ++ +
Sbjct: 465 AVEMLDDAKIQQMDLFFSGGRQKRGMNIKGIAKKTLRQLFQEGFDS--------ITSILQ 516

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS--LERFIFSLGI-RHVGAEIARSLAK 572
             +    +     G       N+  +I++R +    L + + +  +  HV  + A  +  
Sbjct: 517 ASEEDLAEALGKPGV----AANIKKAIDERFSTPVDLSQIMGASQVFPHVRTKTATKIIA 572

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            Y            I+  N  +   +  V  VG             P     +    +  
Sbjct: 573 KYP----------KIMKMNAKELKKIKDVSGVGQETLDGFAAAM--PGFKLFLRDNPQIK 620

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV-- 690
             S    +K  S++++ K  VFTGT+ K++R  AQ  V  +G      L +  D +++  
Sbjct: 621 IASKSVTKKPTSNKLQGKIFVFTGTMDKMRREDAQNLVEDMGGKAPGTLKKNVDFLVIGD 680

Query: 691 -GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G     KL +A++    I++E  FL ++
Sbjct: 681 KGGAGKKKLAQAEKFDTPIISETDFLTMI 709


>gi|6179416|emb|CAB59902.1| DNA ligase [Campylobacter jejuni]
          Length = 245

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/250 (33%), Positives = 124/250 (49%), Gaps = 15/250 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +KE        +     YY+  +P+  D EYDAL R   A      D       + P  K
Sbjct: 3   KKEYLEKVALAASWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEI---SKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP+ +  N  E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVLEIDNIPKTI--NYKEKIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G+ +  F K   E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTK-HSE 228

Query: 257 MLQKMRCLGF 266
           ++Q +R LGF
Sbjct: 229 VMQFIRELGF 238


>gi|330995011|ref|ZP_08318931.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
 gi|329757924|gb|EGG74448.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
          Length = 239

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPKIDG 136
           G        +  H +P LSL+ +++ E+   FI+RI RF    ++    + F  EPKIDG
Sbjct: 2   GAPATGPFRRHRHMVPMLSLDNVFSREEFEGFISRIARFLGLDEEQARQLSFVAEPKIDG 61

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YE G+FV    RGDG  GEDV+A +R +  IP  L    P++IE+RGEV++SK 
Sbjct: 62  LSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDIPDQLPAPCPDVIEIRGEVFLSKQ 121

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255
            FL LN      G +P+ANPRNAA+G LR+L+      R L+ F +  G  S   A   +
Sbjct: 122 AFLELNAAQERAGDRPFANPRNAAAGSLRQLDAGITARRPLSLFAYAAGYCSAPLAATHH 181

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
             L ++   GF VN    Q        ++   +   RS L Y  
Sbjct: 182 GYLAQLAAWGFRVNPLSTQVKDAGAAEAFMERLTLERSALDYRT 225


>gi|256062935|ref|XP_002570360.1| DNA ligase NAD-dependent [Schistosoma mansoni]
 gi|227294819|emb|CAY18406.1| DNA ligase, NAD-dependent, putative [Schistosoma mansoni]
          Length = 311

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 98/223 (43%), Positives = 138/223 (61%), Gaps = 21/223 (9%)

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVD+  LQ+ LG  AR+PRW +++KF  ++ASTRL  I+ Q+GRTG LTPVARL PV
Sbjct: 1   MVVKVDDRRLQQDLGFVARAPRWAVAYKFPAQEASTRLEAIEWQVGRTGALTPVARLAPV 60

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           ++GG +++NATLHN D +  L           D+R GD V++ RAG+VIPKV+  + ++ 
Sbjct: 61  SVGGVVVSNATLHNIDEVHRL-----------DLRAGDTVVIYRAGDVIPKVMRRLDDDG 109

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
           H    P + P  CP+C S VVR      G++VA  RC+ GL C AQ+ E L+HF SR A 
Sbjct: 110 HAARAPVALPDACPVCASAVVR----PEGEVVA--RCSAGLFCPAQRKEALRHFASRRAM 163

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524
           +IEGLG++ +D        A  +  PADI+ L   Q     ++
Sbjct: 164 DIEGLGEKWVDLMVD----AGLLHTPADIYRLSAEQLLQLPRM 202


>gi|330879795|gb|EGH13944.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 281

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 89/295 (30%), Positives = 139/295 (47%), Gaps = 42/295 (14%)

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+
Sbjct: 1   MVANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVAERRPENAR 49

Query: 427 PFSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
               P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR A
Sbjct: 50  AVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRA 109

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IEGLG + ++     +     I  PAD++ L+  Q           GF ++S   L  
Sbjct: 110 MDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIIDLE------GFAEISSNKLLK 159

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  ++ +          
Sbjct: 160 AIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY---------- 209

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENK 650
           +P VG  +A  I  F+++  N   ++ALL E    +        E   S+ +E  
Sbjct: 210 LPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 264


>gi|332141273|ref|YP_004427011.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551295|gb|AEA98013.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 171

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 94/162 (58%), Gaps = 5/162 (3%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++EQARK+++ L   ++ ++  YY    P I D+ YD   +   A+   +P L   + PN
Sbjct: 4   TLEQARKKVAELRNTLNEYNYQYYVLDDPSIPDAVYDRDMQSLIALEKQYPSL---QSPN 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+GGE   +  +VTH +P LSL+  ++ E L  F  R+    +  D +S+ F+ EP
Sbjct: 61  SPSQKVGGEALSAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKDRLK--DTSSLHFSCEP 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
           K+DG  ++I YE G+ V AA RGDG  GE+++A +R I  +P
Sbjct: 119 KLDGLAVSILYENGELVRAATRGDGQVGENITANVRTISNVP 160


>gi|15078917|ref|NP_149668.1| 205R [Invertebrate iridescent virus 6]
 gi|82012211|sp|Q91FW5|VF205_IIV6 RecName: Full=Putative DNA ligase 205R
 gi|15042287|gb|AAK82067.1|AF303741_205 205R [Invertebrate iridescent virus 6]
          Length = 615

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 131/706 (18%), Positives = 265/706 (37%), Gaps = 137/706 (19%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
              D  Y+   K I+ D+EYD L  +                       +G    +S  K
Sbjct: 26  EKADHFYFNTEKEILTDNEYDILAEQLQ------------------STNVGCSPLIS--K 65

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
               +   SL+K++N ++L  +I ++             + ++ K+DG    I  +  K 
Sbjct: 66  TDLPLWMGSLDKVYNDKELNLWIKKVASD---------KYIIQCKLDGVSCLIINKDNKL 116

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIA 207
             A  RG+G  G D+S  I+        +    +P  I +R E+ I K  F         
Sbjct: 117 -KAYTRGNGKVGTDISHLIKYF------IKDKCLPNNIALRCEIIIKKETFNQKYKHA-- 167

Query: 208 VGRKPYANPRNAASGILRRLNPTDITRYLN---FFVHGLGKTS----EIFAKGQYEMLQK 260
                ++NPR+  SG++ R     +   LN      + L        +     Q E++++
Sbjct: 168 -----FSNPRSFVSGVVNRKQENIVISELNDLCLIAYELINFPVNEYQKNILTQIEIIEQ 222

Query: 261 MRCLGFP----VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +  + F     ++N          +       K +++   +++DGLV   +   ++    
Sbjct: 223 LNFIQFVNFKTISNEFLTQKALSNL------FKEMKNNSLFEMDGLVILANTPYIR---- 272

Query: 317 ERARSPRWMISHKFAEKQA-STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
               +P+  I+ K         ++  I+  +G+TG+ TP   + P  I G  ++  T  N
Sbjct: 273 VTEGNPKHSIAFKVRGDNVKEAKVTFIEWNVGKTGVFTPKVHIVPTEINGTTVSCFTGFN 332

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            +Y+             + I  G  +LV RAG+ IP+++ +            +FP    
Sbjct: 333 ANYL-----------IEKGIGEGAIILVTRAGDAIPQIIGV------KQTGVLTFP---- 371

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
                       K  +     R    +    + ++++ HFV  ++ +I  + +  ++  +
Sbjct: 372 ------------KDYEWKGDCRIVEKIESKERIIKQILHFV--ESVDIPYIKEATINKLY 417

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            +     SI +   +              +++L FG    + +Y+SI K     +E+F+ 
Sbjct: 418 NNGCT--SIELFLKL------------TQKDLLLFGPKLSSTIYNSIQKSFEAPIEKFLS 463

Query: 556 SLGIRH--VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
                   +G +    L + Y           N+    N D + L+ +  +G   A  I 
Sbjct: 464 GYNAFGDYIGEKKILLLLQKYP----------NLFELENLDAIDLVSIEGIGSKTATQIK 513

Query: 614 EFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + +    N   +   + +     G  H  +  + +E  K+  +GT   +     QE    
Sbjct: 514 QHF---INAKLIYNNIIQNKLFKGVLHTPSKQNTVELFKVCVSGTRDPL---FIQEL-KN 566

Query: 673 LGAVVSAILSRKTDIIIV--GDNPGSKLEKAQQLGVKIMNEEQFLF 716
            G V+S  +++K  ++IV   +   +K++KA  +G+ I+  E F  
Sbjct: 567 RGFVLSDNITKKVKVLIVKNSNEETTKVKKANSVGITILTLEDFKQ 612


>gi|284008967|emb|CBA75857.1| NAD-dependent DNA ligase LigB [Arsenophonus nasoniae]
          Length = 547

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 99/560 (17%), Positives = 187/560 (33%), Gaps = 111/560 (19%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           Q I           +E+ ++  E+   D+ YY   + ++ D  YD +       ++    
Sbjct: 34  QNIQCPDWPKLVLHREIKAINSELKRWDEAYYINGQSLVNDETYDQIFALWKHWSNC--- 90

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L    D    L            + TH +    L+KI   +++ ++I   +  W      
Sbjct: 91  LRLPPDKTNTL------SLPIKGRKTHPVIHTGLKKI-TADEIARWIAGRHEVW------ 137

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                L+PK+DG   T+ Y+KGK      RG+G  G D +     +P IP+ +  N    
Sbjct: 138 -----LQPKVDGVAATLVYKKGKLAALISRGNGIEGIDWTPKADFLPAIPKTIP-NHATQ 191

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGL 243
           + ++GE++  +        + IA G    AN RN  +G L R N        +  F+   
Sbjct: 192 LILQGELFWYQTGH----QQAIAGG----ANARNKVAGWLMRKNLLVQQEEQIGIFIWSW 243

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                   + Q+  L++    GFP+         +   I  +     +    +P+  DG+
Sbjct: 244 PDGPSNM-QTQFAQLER---WGFPLTKRYSHLVTSVDQITQWQRYYYNQ--PMPFATDGI 297

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K   ++L +    +A    W ++ K+  +    ++  +   IGRTG + P+       
Sbjct: 298 VLKQLPYTLGQYW--QAGINNWSVAWKYPTQNRVAQVAAVKFNIGRTGKINPII------ 349

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--E 420
                                           I  GD + +  +G  IPK   I+    +
Sbjct: 350 -------------------------------GILPGDAIQISLSGHGIPKFDKIVWQIKQ 378

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R   + P         C    +R                    C +Q + RL        
Sbjct: 379 RKMLSVPEQKNYHQLSCFYYSMR--------------------CESQFVARLVWLA--KQ 416

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
             +EG+ ++      ++            I  L    + +  +I  +  F       +Y 
Sbjct: 417 LKMEGINEKGWLALIRAGK----------ITNLMDWSRLTLEQITEVAMFKANKGKFIYQ 466

Query: 541 SINKRRNISLERFIFSLGIR 560
                +      ++  LG+ 
Sbjct: 467 QFLSAQKRPFSEWLKGLGVP 486


>gi|145640787|ref|ZP_01796370.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|145274713|gb|EDK14576.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21]
          Length = 191

 Score =  223 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 83/216 (38%), Positives = 128/216 (59%), Gaps = 27/216 (12%)

Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398
           + D++ Q+GRTG +TPVA+LEPV + G  ++NATLHN D I+ L+           I +G
Sbjct: 1   MNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLN-----------IAIG 49

Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           D V+++RAG+VIP+++ ++   R  +A+P  FP+ CP+C S+++R          A  RC
Sbjct: 50  DTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIEGE------AVARC 103

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           TGGL C+AQ+ E LKHFVSR A +I+G+G + ++     E     I  PAD+F L     
Sbjct: 104 TGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRE----LIHTPADLFKLD---L 156

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           T+ T+   +   G  S  N  +S+   ++ +L RFI
Sbjct: 157 TTLTR---LERMGAKSAENALNSLENAKSTTLARFI 189


>gi|153831338|ref|ZP_01984005.1| DNA ligase [Vibrio cholerae 623-39]
 gi|148873180|gb|EDL71315.1| DNA ligase [Vibrio cholerae 623-39]
          Length = 159

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 5/164 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         +   F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHS--AFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRL 159


>gi|257484999|ref|ZP_05639040.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 181

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 10/184 (5%)

Query: 48  YDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDL 107
           YD L     A+    P L     P+ P  ++G     +  +V H +P LSL   +   D+
Sbjct: 1   YDRLFHELKALEAENPHLV---TPDSPTQRVGSAALSAFTQVRHEMPMLSLGNAFEESDM 57

Query: 108 RKFITRIYRFWQKKDDN------SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGE 161
            +F  R+         +       + ++ EPK+DG  +++ Y  G  V  A RGDG +GE
Sbjct: 58  LEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGLAVSLLYRDGALVCGATRGDGTTGE 117

Query: 162 DVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
           D+S  +R +  IP  L     P+++EVRGEV++SK  F  LN   + +G K +ANPRNAA
Sbjct: 118 DISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAA 177

Query: 221 SGIL 224
           +G L
Sbjct: 178 AGSL 181


>gi|297520938|ref|ZP_06939324.1| NAD-dependent DNA ligase LigB [Escherichia coli OP50]
          Length = 312

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 138/343 (40%), Gaps = 44/343 (12%)

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H +    + K+ +   L  ++      W           ++PK+DG  +T+ Y  GK 
Sbjct: 7   VMHPVAHTGVRKMVDKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKL 55

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
             A  RG+G  GED +  +  I  +P+ +S  +     ++GE+++ +   +         
Sbjct: 56  NKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ------- 107

Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
            +    N R   +G++ R + +D    L  FV       ++      + L+++   GF +
Sbjct: 108 -QMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM----SDRLKELATAGFTL 162

Query: 269 NN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD-EFSLQKQLGERARSPRWMI 326
                R       +    NE     + LP+  DG+V +   E   +  L  +A    W++
Sbjct: 163 TQTYTRAVKNADEVARVRNEWWK--AELPFVTDGVVVRAAKEPESRHWLPGQA---EWLV 217

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           + K+        +  I   +G++G ++ VA L PV +    +    + +    +      
Sbjct: 218 AWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ------ 271

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQP 427
                  DI  GD++LV  AG+ IP++ D++    ER     P
Sbjct: 272 -----EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPP 309


>gi|330872403|gb|EGH06552.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 379

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 147/436 (33%), Gaps = 71/436 (16%)

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           E+Y   +D +               N R+  +G+L R   +      +  FV        
Sbjct: 1   ELYWRLDDHIQ--------SASGSVNARSKVAGLLARQTISPQQADAIGLFVWDWPNGPG 52

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A    + L  ++ +GF  +         +   + + E    R+ LP+  DG++ +  +
Sbjct: 53  DMA----QRLAGLQAMGFEDSAAYSHPLENYAKAARWREH-WYRNPLPFATDGVIMRQGQ 107

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               ++   +A +P W+ + K    QA   +  +   +GR+G +TPV  L PV +    +
Sbjct: 108 RPPMQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRLDDRTV 165

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  +  +    + L           DIR GD+V V  AG  IP++  +I           
Sbjct: 166 SRISTGSLQRWQTL-----------DIRPGDQVAVSLAGLTIPRLDGVISRA-------- 206

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                     +  V  + P+               C +Q   RL     +    + G+G 
Sbjct: 207 ----------AERVEMIIPQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVGP 256

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
              D   ++      I    D  TL   +        NI GF + S   L  S+   R  
Sbjct: 257 GTWDKLIENGQ----IESLLDWMTLNHAELA------NIPGFAERSSAKLLASLQTARER 306

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             + ++ ++G+   G+                      +   + + W +    P +G   
Sbjct: 307 PFQTWLKAIGLPPTGSAT-------------LPDNWQELAGRSVEQWQAE---PGIGPGR 350

Query: 609 AQAIVEFYQNPRNICA 624
           A  +  F+Q P     
Sbjct: 351 AAKLRSFFQAPEVQAL 366


>gi|225013054|ref|ZP_03703469.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A]
 gi|225002782|gb|EEG40763.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A]
          Length = 183

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 5/172 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ R ++ +L + +  H+  YY    PII D E+D L ++ + +    PDL    D N 
Sbjct: 1   MQEIRNKIEALREVLHDHNHRYYILDDPIISDYEFDQLLQQLNELEVQNPDLT---DLNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +  S   V H  P  SL   ++ E+L ++  R+ +     ++  I +T E K
Sbjct: 58  PTRRVGGGVTKSFETVPHKYPMYSLSNTYSKEELMQWEERLRKSLG--EETQIEYTCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
            DG  I++ YE G  + A  RGDG  G++++  +R I T+P  L  + P+  
Sbjct: 116 FDGASISLTYENGILIKAITRGDGLQGDNITTNVRTIKTVPLKLKSDFPKFF 167


>gi|218459622|ref|ZP_03499713.1| NAD-dependent DNA ligase LigA [Rhizobium etli Kim 5]
          Length = 186

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/182 (41%), Positives = 117/182 (64%)

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            LY +IN+ R+I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + D W 
Sbjct: 3   KLYAAINEPRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMREAAPLSGDAWN 62

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            L  +  +G+++A+A+VEFY+ P NI  +  LL EV+P          S +  K +VFTG
Sbjct: 63  DLNAIEGIGEVVARAMVEFYKEPLNIEVITRLLDEVTPQEAEQPVTAGSPVAGKTVVFTG 122

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+K  R +A+     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L 
Sbjct: 123 SLEKFTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLA 182

Query: 717 LL 718
           L+
Sbjct: 183 LI 184


>gi|59897249|gb|AAX12044.1| DNA ligase [Enterobacteria phage T5]
          Length = 323

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 96/404 (23%), Positives = 162/404 (40%), Gaps = 86/404 (21%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++++++ I    + YY     +I D EYD L +R   +                   IG 
Sbjct: 1   MTNVKEFIKRCQEAYY-QGMSLISDEEYDRLVKRF-PLEEE----------------IGP 42

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +       + H     SL+K++            Y    K   N +      K+DG  I+
Sbjct: 43  K-----GDIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAIS 85

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G+FV A  RG+G  G DV++ +R +  IP+ +S  +P   ++ GEV I+K     
Sbjct: 86  LLYINGEFVQALTRGNGILGNDVTSNVRLL-NIPKKISQKVP--TQITGEVLITKE---- 138

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-----LNFFVHGLGKTSEIFAKGQY 255
                         N RN ASG +   +  D  +      L F  +G+  ++E     + 
Sbjct: 139 ------------VENKRNFASGAINLKDSDDFVQRIGEGGLIFVAYGIQCSAESVGITEA 186

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
                ++ + +  N              +               DG V ++++     + 
Sbjct: 187 ----YLKDMLWLENENFLTVVNVRSFFKWI------------PTDGKVVRINDNHQFFRE 230

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   + PR   + K  E+   T L  ++ Q+G +G +TPV   EPV I  A I  ATL+N
Sbjct: 231 GWTNKFPRGAFAIKEDEEGEITTLTKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNN 290

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
            DYI  L           D+ +G ++ V RAG VIP +V+ + +
Sbjct: 291 VDYINSL-----------DLEIGCQIRVIRAGGVIPCIVERVYD 323


>gi|46401852|ref|YP_006944.1| NAD-dependent DNA ligase, subunit A [Enterobacteria phage T5]
 gi|45775030|gb|AAS77162.1| NAD-dependent DNA ligase, subunit A [Enterobacteria phage T5]
 gi|51512054|gb|AAU05253.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage T5]
          Length = 323

 Score =  217 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 96/404 (23%), Positives = 163/404 (40%), Gaps = 86/404 (21%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++++++ I    + YY     +I D EYD L +R   +                   IG 
Sbjct: 1   MTNVKEFIKRCQEAYY-QGMSLISDEEYDRLVKRF-PLEEE----------------IGP 42

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +       + H     SL+K++            Y    K   N +      K+DG  I+
Sbjct: 43  K-----GDIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAIS 85

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G+FV A  RG+G  G DV++ +R +  IP+ +S  +P   ++ GEV I+K     
Sbjct: 86  LLYINGEFVQALTRGNGILGNDVTSNVRLL-NIPKKISQKVP--TQITGEVLITKE---- 138

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-----LNFFVHGLGKTSEIFAKGQY 255
                         N RN ASG +   +  D  +      L F  +G+  ++E     + 
Sbjct: 139 ------------VENKRNFASGAINLKDSDDFVQRIGEGGLIFVAYGIQCSAESVGITEA 186

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
                ++ + +  N              +               DG V ++++ +   + 
Sbjct: 187 ----YLKDMLWLENENFLTVVNVRSFFKWI------------PTDGKVVRINDNNKFFRE 230

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   + PR   + K  E+   T L  ++ Q+G +G +TPV   EPV I  A I  ATL+N
Sbjct: 231 GWTNKFPRGAFAIKEDEEGEITTLTKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNN 290

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
            DYI  L           D+ +G ++ V RAG VIP +V+ + +
Sbjct: 291 VDYINSL-----------DLEIGCQIRVIRAGGVIPCIVERVYD 323


>gi|182682929|ref|YP_001837053.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage EPS7]
 gi|182630641|gb|ACB97573.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage EPS7]
          Length = 323

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 95/404 (23%), Positives = 163/404 (40%), Gaps = 86/404 (21%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++++++ I    + YY     +I D EYD L +R   +                   IG 
Sbjct: 1   MTNVKEFIKRCQEAYY-QGMSLISDEEYDRLIKRF-PLEEE----------------IGP 42

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +       + H     SL+K++            Y    K   N +      K+DG  I+
Sbjct: 43  K-----GDIPHLYRMYSLQKVY------------YGRGDKAPFNPLGQVETDKLDGCAIS 85

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G+FV A  RG+G  G DV+  ++ +  IP+ +S  +P   ++ GEV I+K     
Sbjct: 86  LLYINGEFVQALTRGNGILGNDVTHNVKML-NIPKTISQKVP--TQITGEVLITKE---- 138

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-----LNFFVHGLGKTSEIFAKGQY 255
                         N RN ASG +   +  D  +      L F  +G+  ++E     + 
Sbjct: 139 ------------VENKRNYASGAINLKDSDDFIQRIGEGGLIFVAYGIQCSAETVGITEA 186

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
                ++ + +  N              +               DG V ++++ +   + 
Sbjct: 187 ----YLKDMLWLENENFLTVVNVRSFFKWI------------PTDGKVVRINDNNKFFRE 230

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   + PR   + K  E+   T L+ ++ Q+G +G +TPV   EPV I  A I  ATL+N
Sbjct: 231 GWTNKFPRGAFAIKEDEEGEITTLVKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNN 290

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
            DYI  L           D+ +G ++ V RAG VIP +V+ + +
Sbjct: 291 VDYINAL-----------DLEIGCQIRVIRAGGVIPCIVERVYD 323


>gi|3746807|gb|AAC64067.1| NAD-dependent DNA ligase homolog [Bartonella quintana]
          Length = 180

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 84/178 (47%), Positives = 120/178 (67%), Gaps = 1/178 (0%)

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           +VY+ + +F ALN      G+  +ANPRNAA+G LR+L+P    +R L+FF +  G+ SE
Sbjct: 3   KVYMRRENFQALNMSQQEKGKFVFANPRNAAAGSLRQLDPRITASRKLHFFAYACGEVSE 62

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            FA  Q EM++K++  GF +N   +   T   I+SYY++++  R +L YDIDG+VYKV++
Sbjct: 63  TFAASQMEMMKKLKEYGFFINPLTKSFKTLEEIISYYHDIEECRHSLSYDIDGIVYKVND 122

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
             LQ +LG  +RSPRW ++HKF  ++A   L  IDIQ+GRTG LTPVARL P+ IGG 
Sbjct: 123 LKLQMRLGFVSRSPRWAVAHKFPAEKAMALLEGIDIQVGRTGALTPVARLAPITIGGV 180


>gi|325662259|ref|ZP_08150874.1| hypothetical protein HMPREF0490_01612 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471511|gb|EGC74732.1| hypothetical protein HMPREF0490_01612 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 260

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 117/275 (42%), Gaps = 22/275 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ ++ +  L Q ++     YYQ +K I+ + EYD L      +             N 
Sbjct: 1   MEQKKQRMQELVQLLNQAGKAYYQDAKEIMSNHEYDRLYDELLVLEQE----LGITMANS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K    + L++F+                  +  K
Sbjct: 57  PTVNVGYEVLSELPKERHEKPMLSLDKTKETDRLKEFV------------GEKKAVISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + YE G+   A  RG+G  GE ++   +    +P  L +     + +RGE  I
Sbjct: 105 LDGLTIVLTYENGELKKAVTRGNGEVGEVITNNAKVFQNVP--LRIAYRGELILRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI-FA 251
              DF  +N+E+  V  K Y NPRN  SG +R+LN     R  + F+   L K   + F 
Sbjct: 163 GYRDFEKINEEIEDVDAK-YKNPRNLCSGSVRQLNNEITARRNVQFYAFSLVKAEGVDFQ 221

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYY 285
             +   L+ ++  GF V        +T    V ++
Sbjct: 222 NSRNIQLEWLKEQGFDVVEHYEVTKDTLEERVRFF 256


>gi|326633001|ref|YP_004306590.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage SPC35]
 gi|321272195|gb|ADW80087.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage SPC35]
          Length = 323

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 98/397 (24%), Positives = 159/397 (40%), Gaps = 86/397 (21%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           I    + YY     +I D EYD L +R   +                   IG +      
Sbjct: 8   IKRCQEAYY-QGMSLISDEEYDRLIKRF-PLEEE----------------IGPK-----G 44

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            + H     SL+K++            Y    K   N +      K+DG  I++ Y  G+
Sbjct: 45  DIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAISLLYINGE 92

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           FV A  RG+G  G DV++ +R +  IP+ +S  +P   ++ GEV I+K            
Sbjct: 93  FVQALTRGNGILGNDVTSNVRLL-NIPKKISQKVP--TQITGEVLITKE----------- 138

Query: 208 VGRKPYANPRNAASGILRRLNPTDITRY-----LNFFVHGLGKTSEIFAKGQYEMLQKMR 262
                  N RN ASG +   +  D  +      L F  +G+  ++E     +      ++
Sbjct: 139 -----VENKRNFASGAINLKDSDDFVQRIGEGGLIFVAYGIQCSAESVGITEA----YLK 189

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
            + +  N              +               DG V ++++ +   + G   +SP
Sbjct: 190 DMLWLENENFLTVVNVRSFFKWI------------PTDGKVVRINDNNKFFREGWTNKSP 237

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           R   + K  E+   T L  ++   G +G +TPV   EPV I  A+IT ATL+N DYI  L
Sbjct: 238 RGAFAIKEDEEGEITTLTKVEWATGASGKITPVGYFEPVIIDDAVITKATLNNVDYINSL 297

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
                      D+ +G ++ V RAG VIPK+V+ + +
Sbjct: 298 -----------DLEIGCQIRVIRAGGVIPKIVERVYD 323


>gi|23011878|ref|ZP_00052110.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 295

 Score =  212 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 98/231 (42%), Positives = 141/231 (61%), Gaps = 25/231 (10%)

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNE Y++G+ A G+ +R G DIRVGD V+V RAG+VIPKV+D+++++R  DA 
Sbjct: 1   MLSNATLHNEGYVQGVGADGEPIREGLDIRVGDTVIVVRAGDVIPKVMDVLLDKRPADAV 60

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF FP  CP C S+ VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+ F++EG 
Sbjct: 61  PFVFPETCPACGSKAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 120

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTKIEN---------- 526
           G+  ++  F+    A  ++ PAD+F L+          RR+  S  +             
Sbjct: 121 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEPAPKKPTK 176

Query: 527 -ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                 D ++ NL  S+  RR+I L RF+F+LGI  +G   A++      +
Sbjct: 177 KKGEEEDKAIKNLLASLEARRSIPLNRFLFALGIPQIGESTAKAWPSASPT 227


>gi|309800389|ref|ZP_07694554.1| DNA ligase [Streptococcus infantis SK1302]
 gi|308115980|gb|EFO53491.1| DNA ligase [Streptococcus infantis SK1302]
          Length = 240

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 116/267 (43%), Gaps = 28/267 (10%)

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              +    P+ CP C S+++   +        A RC     C AQ  E L HF SRDA N
Sbjct: 1   MSEEKLDIPTNCPSCDSKLLHFEDE------VALRCINPR-CPAQIKEGLTHFASRDAMN 53

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I GLG   +   F     A  ++  ADI+ L               G  + S   LY +I
Sbjct: 54  ISGLGPSIVKKLF----AADLVKDVADIYHLTVEDLLLLD------GIKEKSAQKLYQAI 103

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +  S E+ +F LGIRHVG++ ++ L + + S ++ AQ     IA           + 
Sbjct: 104 QASKENSAEKLLFGLGIRHVGSKASQLLLQNFHSIESLAQANPEEIA----------SIE 153

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            +G +IAQ++  ++    +   +       V+          ++ +    +V TG L+++
Sbjct: 154 SLGSVIAQSLQTYFATEGSEILLRELKESGVNLDYKGQTVAANAALSGLTVVLTGKLERL 213

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDII 688
            R +A+  +  LGA V+  +S+K  ++
Sbjct: 214 NRSEAKNKLESLGAKVTGSVSKKQTLL 240


>gi|213419664|ref|ZP_03352730.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 190

 Score =  207 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 99/198 (50%), Gaps = 13/198 (6%)

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
           +  +   G  S  N+ +++ K +  +  RF+++LGIR VG   A  LA Y+ + +     
Sbjct: 1   MTGLDRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAA 60

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHE 640
             + +           +VP VG ++A  +  F+    N   +    A        +  + 
Sbjct: 61  TIDELQ----------KVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINA 110

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
           + + S    K +V TG+L ++ R  A+  +  LGA V+  +S+KTD++I G+  GSKL K
Sbjct: 111 QEIDSPFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAK 170

Query: 701 AQQLGVKIMNEEQFLFLL 718
           AQ+LG+ +++E + + LL
Sbjct: 171 AQELGITVIDEAEMIRLL 188


>gi|323195836|gb|EFZ81008.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
          Length = 380

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 142/438 (32%), Gaps = 62/438 (14%)

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           L  E     R    N R+  +G+L R +       L  F+               E L +
Sbjct: 3   LQREGHIQQRMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMP----ERLSQ 58

Query: 261 MRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           +   GF +      A      +        +  S LP+  DG+V ++ +    +    R 
Sbjct: 59  LAKAGFSLTKKYTLAVKDASEVERARQSWLT--SALPFVTDGVVIRMAKEPAAQYW--RP 114

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
               W+ + K+       ++  I   +G++G +T VA L PV +    +    + +    
Sbjct: 115 GQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIGSVKRW 174

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           +             DI  GD++LV  AG+ IP++ +++   R                  
Sbjct: 175 EA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSRER---------------- 207

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
                  P      +         C  Q + RL    SR A  ++G+G+       ++  
Sbjct: 208 ---SKPVPPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRALHQTHR 264

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
                     IF+       ++ +I N  GF       ++   N  R     R+I ++ I
Sbjct: 265 -------FEHIFSWLA---LTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRWIMAMDI 314

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
                  A   A    S++                     ++P  G+  A  ++++  NP
Sbjct: 315 PL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPSTGERRAGRVIDWRDNP 361

Query: 620 RNICAVEALLKEVSPSIG 637
           +       L  +  P  G
Sbjct: 362 QIKALSRWLAAQHIPGFG 379


>gi|288575281|ref|ZP_06393611.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996]
 gi|288568349|gb|EFC89909.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996]
          Length = 446

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 101/468 (21%), Positives = 167/468 (35%), Gaps = 167/468 (35%)

Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDA----------------------------- 425
           +RVGD V+V+RAG+VIP+VV +I   R                                 
Sbjct: 1   MRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDDLKQQQDDLFAETPSANQTQSV 60

Query: 426 ---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              +P+  P+ CPIC+S + R+         A  RC+GG+ C AQ+ + L HF SR A +
Sbjct: 61  PLHKPYRLPTHCPICRSEIEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMD 114

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTL------QRRQQTSTTKIENILGFGD---- 532
           I+GLG++Q++     +     +R  AD++ L      + ++       EN  G  +    
Sbjct: 115 IDGLGQKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKEMADKASSENENGDAETVSG 170

Query: 533 ---------------VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
                              N+   I   +   L RF+F+LGIRHVG   A++LA+ + S 
Sbjct: 171 DLSEPNTQTGKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGSL 230

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA---------- 627
           ++  +    I+A           +P +G ++A++I  F+        ++           
Sbjct: 231 EHVRRAPEPILAC----------LPDIGTVVARSIAHFFAQDAQQAMIDELLAAGVVPQT 280

Query: 628 --------------LLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQ--------- 662
                               P     E    +  E+  K     G LQ  +         
Sbjct: 281 QTVTIPPARHAEPQHWIARLPGFKISENKAQALWELAGKS--IEG-LQTDKALPADWQTW 337

Query: 663 RHKAQ--EYVTQLGAVVSAILSRKTD---------------IIIVG-------------- 691
           R +AQ    +  L    +   S+  D                ++ G              
Sbjct: 338 RSEAQNTALLENLKTFFAQTSSKNQDEAFSDGLNEAVAGKTFVLTGTLPTLKRDQAQALI 397

Query: 692 DNPGSK---------------------LEKAQQLGVKIMNEEQFLFLL 718
           +  G K                     LEKA  LGV +++EE+ L +L
Sbjct: 398 EAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVAVLSEEELLAML 445


>gi|237756712|ref|ZP_04585213.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691122|gb|EEP60229.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 215

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 79/235 (33%), Positives = 119/235 (50%), Gaps = 22/235 (9%)

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +  F+  +     +R   DI+ L          I+NI GFG  SV NL ++I + +   
Sbjct: 1   TIRKFYNLK----LVRTIPDIYRLNYNL------IKNIPGFGPKSVENLKNAIEESKKRP 50

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R I+ LGIR+VG   A++LA       +            +     LI++P VGD +A
Sbjct: 51  LYRLIYGLGIRYVGEVTAKTLASAVKCIDDLK----------DFTITDLIKLPDVGDKVA 100

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
             I  F+ N +N+  ++ L      +    E+    ++     VFTGTL+   R KA+E 
Sbjct: 101 SEIYNFFHNQQNLKMIQELRDLGVKTCHEEEEK-KGKLAGLNFVFTGTLKCCSREKAKEI 159

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYNT 723
           V  LG  V   +S+K   ++VG+ PGSKL+KAQ+LG VKI+NEE+FL L+   N 
Sbjct: 160 VESLGGNVLDTVSKKVHYLVVGEEPGSKLQKAQKLGTVKIINEEEFLKLIGGENA 214


>gi|167751779|ref|ZP_02423906.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216]
 gi|167660694|gb|EDS04824.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216]
          Length = 323

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 21/238 (8%)

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IEGLG++ ++  F++      +   AD++ L+  Q             G+ S  N+  
Sbjct: 1   MDIEGLGEETVELLFEN----GLLHDIADLYDLRAEQLACL------PRLGEKSAENIIR 50

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           SI     +  +R +F+LGIR VG   A+ LA ++ +           +          I 
Sbjct: 51  SIRGSVEVPFQRVLFALGIRFVGETTAKYLAAHFRTLDAVMHATREEL----------IE 100

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
              VG  IA AI++++ +  N+  +E L K    +   H+   S  +  K  V TG    
Sbjct: 101 ADEVGGKIADAIIDYFADAENLRIIERLRKAGLQTEAAHKALESESLAGKNFVITGRFSG 160

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFL 717
             R + +E +   G    A +S   + ++ G   G  K++KA QLGV+++ EE+ L +
Sbjct: 161 HSRDELKELIEAHGGKNLAGVSGNVEFLVAGKKIGPGKIQKATQLGVRLIPEEELLAM 218


>gi|226327976|ref|ZP_03803494.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198]
 gi|225203680|gb|EEG86034.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198]
          Length = 186

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 104/189 (55%), Gaps = 14/189 (7%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
             L  +++K ++ +  RFI++LGIR VG   A  L  ++ + +          A  N D 
Sbjct: 6   KKLITALDKAKSTTFARFIYALGIREVGEATASGLTAHFSTLE----------ALRNADV 55

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKK 651
            +L  VP VGDI+A+ +V F+Q   N   ++ L+ +   +         +   +    K 
Sbjct: 56  EALKLVPDVGDIVAKHVVNFFQEEHNRTVIDQLINDAGITWQAPIIVTHEVGENPFAGKT 115

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +V TG+L ++ R +A++ +  LGA VS  +S+KTD++I G+  GSKL KA +LG+ +++E
Sbjct: 116 VVLTGSLSQLTRDEAKDRLVALGAKVSGSVSKKTDMVIAGEAAGSKLVKANELGITVIDE 175

Query: 712 EQFLFLLQQ 720
           ++ + LL Q
Sbjct: 176 DEMIRLLDQ 184


>gi|149911106|ref|ZP_01899733.1| DNA ligase, NAD-dependent, putative [Moritella sp. PE36]
 gi|149805856|gb|EDM65845.1| DNA ligase, NAD-dependent, putative [Moritella sp. PE36]
          Length = 413

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/410 (21%), Positives = 170/410 (41%), Gaps = 53/410 (12%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP--L 75
           +  +S LE +I  H   YY    P++ D E+D L      ++H             P   
Sbjct: 50  QHRISYLETQIIKHRRIYYAGQTPLLHDGEFDLLVDELTVLSHCL----------SPVLT 99

Query: 76  NKIGGEMNLSLFKVT----HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
              GG +  +  +      H    LSL  +     + KF                   ++
Sbjct: 100 QIGGGNLQHNDTRQRDRQPHRQQMLSLNSVRERTAVDKFYQ---------LHQDQQLLIQ 150

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  I + YEKG  V A+ RGDG  G+D+ A +     +  +++   P  + + GE+
Sbjct: 151 PKFDGMAIELVYEKGMLVGASSRGDGKQGKDLLALMLRSNAVNSMIA--YPYTLVIHGEL 208

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ + D+          G+  Y + R+  +GI  +L+P       L F         +  
Sbjct: 209 YVGQQDW-------QLRGK--YVSSRHMTAGIASQLSPAQTDVMSLRFMPWRWI---DSP 256

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              +   L ++  LGF   + +         + Y+       +T  + +DG+V K+   +
Sbjct: 257 YNNELMGLAQLAMLGFADMSKMSHVIDRPQDIDYWLAHYQ--NTEAFLLDGIVLKLANNT 314

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+Q G    +PRW ++ KF   +  + ++DI  Q+G++G +TP+  ++P+ + G  +T 
Sbjct: 315 LQRQYGHTQHAPRWALALKFTGPKGLSNVIDITYQVGKSGRVTPIIHVQPLALSGRQVTR 374

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
            +  ++ ++               I VG +V ++  G   P++  ++ + 
Sbjct: 375 VSGRSQPWL-----------LQSKIEVGSQVEIELVGNATPQLTRLVSDR 413


>gi|213024747|ref|ZP_03339194.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 175

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 5/173 (2%)

Query: 98  LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
           L+ +++ E    F  R+    +  ++  + +  E K+DG  ++I YE G  V AA RGDG
Sbjct: 1   LDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELKLDGLAVSILYENGVLVSAATRGDG 58

Query: 158 HSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216
            +GED+++ +R I  IP  L   NIP  +EVRGEV++ +  F  +N++    G K +ANP
Sbjct: 59  TTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANP 118

Query: 217 RNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFP 267
           RNAA+G LR+L+P     R L FF +G+G              L + +  G+ 
Sbjct: 119 RNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGYR 171


>gi|291545736|emb|CBL18844.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Ruminococcus sp. SR1/5]
          Length = 225

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 116/240 (48%), Gaps = 22/240 (9%)

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NI+GL +  L+ F         I    DIF + R +     +I  + GFG  S  NL +
Sbjct: 1   MNIDGLSEATLEKFIAR----GFIHDFGDIFEISRYK----DEIVEMEGFGQKSYDNLME 52

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ + +  +L R I+SLGI ++G   A+ + +++ +         ++    +     +  
Sbjct: 53  SLERAKETTLPRVIYSLGIANIGLANAKVICRHFDN---------DLDRIRHASLEEVSD 103

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G +IA  +V ++++  N   ++ L+  +       ++      E    V TG+L  
Sbjct: 104 IDTIGPVIAGNLVAYFRDEDNDRRLDHLMSFLHIQEDSPKQ--EQIFEGMNFVITGSLVH 161

Query: 661 I-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
              R +A+E +  LG  V+  +++KT+ +I  D  +  SK +KA++LG+ I++EE F  L
Sbjct: 162 FGNRSEAKELIESLGGKVTGSVTKKTNYLINNDIQSNSSKNKKARELGIPILSEEDFRKL 221


>gi|48249475|gb|AAT40982.1| putative DNA ligase [Xenorhabdus nematophila]
          Length = 168

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 14/175 (8%)

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RFI+SLGIR VG   A +L  ++ + +               D  +LI V  VG I+A
Sbjct: 4   FARFIYSLGIREVGETTAANLVSHFGTLEKLQAA----------DTEALIAVQDVGGIVA 53

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQKIQRHK 665
             +V F+  P N   ++ L+  +       E      +      K +V TG+L ++ R +
Sbjct: 54  SHVVNFFNEPHNQAVIDDLVNNIGIHWESAESPNLGEIDGPFAGKTVVLTGSLNRLSRDE 113

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LGA V+  +S+KTD++I G+  GSKL KA +LG+ +++E++ + LL++
Sbjct: 114 AKDKLAALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELGIPVIDEDEMIRLLRE 168


>gi|77407286|ref|ZP_00784228.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
 gi|77174105|gb|EAO77032.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
          Length = 223

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 28/244 (11%)

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +V            A RC   L C  Q  ERL HF SRDA NI G G   
Sbjct: 4   PKLCPSCGSELVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSL 56

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F     A  I   ADI+ L      +        G  + S T +Y +I   +  S 
Sbjct: 57  VEKLFD----AHLIADVADIYRLSIENLLTLD------GIKEKSATKIYHAIQSSKENSA 106

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVG++ +R L + + + +  +Q     IA           +  +G +IA+
Sbjct: 107 EKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIAK 156

Query: 611 AIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++  F++       +E      V+ +      +  +++    +V TG L+K+ R++A+E 
Sbjct: 157 SLHTFFEKEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEK 216

Query: 670 VTQL 673
              L
Sbjct: 217 FKTL 220


>gi|320179984|gb|EFW54926.1| DNA ligase , LigB [Shigella boydii ATCC 9905]
 gi|332084828|gb|EGI90011.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           boydii 5216-82]
          Length = 355

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 142/405 (35%), Gaps = 62/405 (15%)

Query: 224 LRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIV 282
           + R   +D    L  FV       ++      + L+++   GF +     R       + 
Sbjct: 1   MMRQGNSDTLNSLAVFVWAWPDGPQLM----TDRLKELATAGFTLTQTYTRAVKNADEVA 56

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVD-EFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
              NE    R  LP+  DG+V +   E   +  L  +A    W+++ K+        +  
Sbjct: 57  HVRNEWWKAR--LPFVTDGVVVRAAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKA 111

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           I   +G++G ++ VA L PV +    +    + +    +             DI  GD++
Sbjct: 112 IQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQI 160

Query: 402 LVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459
           LV  AG+ IP++ D++    ER                         P   +  +     
Sbjct: 161 LVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCYF 199

Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
               C  Q + RL    S+    ++G+G+       ++            IF+       
Sbjct: 200 ASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQT-------HRFEHIFS---WLLL 249

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYYL 575
           +  +++N  G        L+   N  R     R++ ++GI      + A   RS ++   
Sbjct: 250 TPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLF 309

Query: 576 SYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 310 STEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 354


>gi|332084531|gb|EGI89726.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           dysenteriae 155-74]
          Length = 355

 Score =  187 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 141/405 (34%), Gaps = 62/405 (15%)

Query: 224 LRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIV 282
           + R   +D    L  FV       ++      + L+++   GF +     R       + 
Sbjct: 1   MMRQGNSDTLNSLAVFVWAWPDGPQLM----TDRLKELATAGFTLTQTYTRAVKNADEVA 56

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVD-EFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
              NE    R  LP+  DG+V +   E      L  +A    W+++ K+        +  
Sbjct: 57  HVRNEWWKAR--LPFVTDGVVVRAAKEPESHHWLPGQA---EWLVAWKYQPVAQVAEVKA 111

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           I   +G++G ++ VA L PV +    +    + +    +             DI  GD++
Sbjct: 112 IQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ-----------EWDIAPGDQI 160

Query: 402 LVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459
           LV  AG+ IP++ D++    ER                         P   +  +     
Sbjct: 161 LVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNSLTCYF 199

Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
               C  Q + RL    S+    ++G+G+       ++            IF+       
Sbjct: 200 ASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQT-------HRFEHIFS---WLLL 249

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----VGAEIARSLAKYYL 575
           +  +++N  G        L+   N  R     R++ ++GI      + A   RS ++   
Sbjct: 250 TPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLF 309

Query: 576 SYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 310 STEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 354


>gi|261884680|ref|ZP_06008719.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 212

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 115/237 (48%), Gaps = 26/237 (10%)

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NI+GLG   ++  ++       I+  ADI+ L               GF    ++NL  
Sbjct: 1   MNIDGLGDAIVELLYQKNI----IKDIADIYRLDELSFIGLE------GFKTKKISNLLS 50

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +IN  +  +L++FI SLGI H+G   A+ +A  Y                       L+ 
Sbjct: 51  AINNSKTPNLDKFIASLGIEHIGEVAAKKIANNYGDR------------WLELTLEELLA 98

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +   G+ +A + +EF +   N+  ++ LL+ ++P +   E    +    K +V TGTL +
Sbjct: 99  LDGFGEAMALSYLEFMRV--NLEKIKELLEFITPKMQNLELKT-NIFSGKTVVITGTLSR 155

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             R + +  +   GA VS+ +S+KTD ++ G+  GSKLEKA +LGV+ ++E ++  L
Sbjct: 156 -SRDEFKAELESYGAKVSSSVSKKTDFVLYGNEAGSKLEKANELGVRAIDESEYESL 211


>gi|270700816|ref|ZP_06223057.1| DNA ligase [Haemophilus influenzae HK1212]
 gi|270315848|gb|EFA27948.1| DNA ligase [Haemophilus influenzae HK1212]
          Length = 152

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 3/152 (1%)

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+  ++  +   F+ RI           + F  EPK+DG  ++I Y  G+   AA R
Sbjct: 1   MLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPKLDGLAVSILYVNGELTQAATR 59

Query: 155 GDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GED++A IR I  +P ++L+ N P  +EVRGEV++    F  LN   +    K +
Sbjct: 60  GDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGFERLNKYALEHNEKTF 119

Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244
           ANPRNAA+G LR+L+P   + R L    +G+G
Sbjct: 120 ANPRNAAAGSLRQLDPNITSKRPLVLNAYGIG 151


>gi|109287930|ref|YP_654624.1| hypothetical protein MIV052L [Invertebrate iridescent virus 3]
 gi|123878657|sp|Q197A8|VF205_IIV3 RecName: Full=Putative DNA ligase 052L
 gi|106073553|gb|ABF82082.1| hypothetical protein MIV052L [Aedes taeniorhynchus iridescent
           virus]
          Length = 756

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 159/436 (36%), Gaps = 79/436 (18%)

Query: 19  KELSSLEQEISYHDDCYYQY-SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN- 76
           ++ + L +     D  YY     PI+ D EYD L    D +           +P+G +  
Sbjct: 7   EKYNQLLKLKEKADKAYYNGVGDPIMSDEEYDNLVDYMDEL-----------NPDGGVKT 55

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+G   + S   V   +P  SL+KI    +   ++                  ++ K+DG
Sbjct: 56  KVGASPSRS-KSVKLPMPMNSLDKIKTQHEFDNWMKNWK--------PKAMLLVKEKLDG 106

Query: 137 TMI----TIRYEKGKFVYAALRGDGHSGEDVSACIRA----------------------- 169
                  T+   K   +    RGDG +G +++  +                         
Sbjct: 107 VSCLAVFTLEQNKPPKIELFTRGDGTTGTNITRLLNHGLKVGNDYCFDDMVNEDKWTTDW 166

Query: 170 -----IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224
                   I     L + ++  +RGE+ +++ +F              + N RN  SG +
Sbjct: 167 GCYLNAEAIDHWKKLPVKKVY-IRGELIVTRKNFQTWYSNR-------FMNARNLVSGQV 218

Query: 225 RRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI-- 281
            + +P   I + ++F  + L    +       E+   +  +        R       I  
Sbjct: 219 NKKSPDPKILQDIDFVPYDLVIDLKRPTMTH-EVEHLLFRMIGATPVYTRFLFLSDTIST 277

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
            S  + ++  +    Y+IDGLV +VD+ +L      R  +P+  ++ K     A T +  
Sbjct: 278 ESMADYLERRKEKSDYEIDGLVIQVDDDTLFAPPDNR--NPKDTVAFKIMGTTARTTVTH 335

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           ++  + +     P   + PV++ G  I+  T  +  YI               I  G  V
Sbjct: 336 VEWNLSKGSKYKPTIHITPVSLSGVTISKVTGFHGKYI-----------SENKIGKGAVV 384

Query: 402 LVKRAGEVIPKVVDII 417
           L+ R+GEVIP +V +I
Sbjct: 385 LITRSGEVIPHIVSVI 400


>gi|213025273|ref|ZP_03339720.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 266

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 108/313 (34%), Gaps = 49/313 (15%)

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +   +          R    N R+ A+G+L R +       L  F+        
Sbjct: 1   GEIFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWAWPDGPA 52

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  E L ++   GF +      A      +        +  S LP+  DG+V ++ 
Sbjct: 53  NMP----ERLSQLAKAGFSLTKKYSLAVKDASEVERARQSWLT--SALPFVTDGVVIRMA 106

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +    R     W+ + K+       ++  I   +G++G +T VA L PV +    
Sbjct: 107 KEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKR 164

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    + +    +             DI  GD++LV  AG+ IP++ +++   R      
Sbjct: 165 VQRVNIGSVKRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSR------ 207

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT-GGLACSAQQLERLKHFVSRDAFNIEGL 486
                          R      G    +  C      C  Q + RL    SR A  ++G+
Sbjct: 208 --------------ERSKPVPPGSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGM 253

Query: 487 GKQQLDFFFKSED 499
           G+       ++  
Sbjct: 254 GEASWRALHQTHR 266


>gi|146229|gb|AAB88710.1| ORF; putative [Escherichia coli]
          Length = 218

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 31/225 (13%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR- 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DVMMPPLN----------GAVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233
           GE+++ +   +          +    N R   +G++ R + +D  
Sbjct: 180 GEIFLQREGHIQQ--------QMGGINARAKVAGLMMRQDDSDTL 216


>gi|309784374|ref|ZP_07679013.1| NAD-dependent DNA ligase OB-fold domain protein [Shigella
           dysenteriae 1617]
 gi|308927881|gb|EFP73349.1| NAD-dependent DNA ligase OB-fold domain protein [Shigella
           dysenteriae 1617]
          Length = 329

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 66/373 (17%), Positives = 136/373 (36%), Gaps = 58/373 (15%)

Query: 256 EMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD-EFSLQK 313
           + L+++   GF +     R       +    NE     + LP+  DG+V +   E   + 
Sbjct: 3   DRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRAAKEPESRH 60

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +    +
Sbjct: 61  WLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNI 117

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFP 431
            +    +             DI  GD++LV  AG+ IP++ D++    ER          
Sbjct: 118 GSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK-------- 158

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
                          P   +  +         C  Q + RL    S+    ++G+G+   
Sbjct: 159 -------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIGEAGW 205

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               ++            IF+       +  +++N  G        L+   N+ R     
Sbjct: 206 RALHQT-------HRFEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNQARKQPFT 255

Query: 552 RFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLSLIRVPLV 604
           R++ ++GI      + A   RS ++  +S + F Q++  I    A    +W    ++  +
Sbjct: 256 RWVMAMGIPLTRAALNASDERSWSQLLVSTEQFWQQLPGIGSGRARQVIEWKENAQIKKL 315

Query: 605 GDIIAQAIVEFYQ 617
           G  +A   +  ++
Sbjct: 316 GSWLAAQQITGFE 328


>gi|213421635|ref|ZP_03354701.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 325

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 128/382 (33%), Gaps = 60/382 (15%)

Query: 258 LQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           L ++   GF +      A      +        +  S LP+  DG+V ++ +    +   
Sbjct: 1   LSQLAKAGFSLTKKYSLAVKDASEVERARQSWLT--SALPFVTDGVVIRMAKEPASQYW- 57

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
            R     W+ + K+       ++  I   +G++G +T VA L PV +    +    + + 
Sbjct: 58  -RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIGSV 116

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
              +             DI  GD++LV  AG+ IP++ +++   R               
Sbjct: 117 KRWEA-----------WDIAPGDQILVSLAGQGIPRLDEVVWRSR--------------- 150

Query: 437 CQSRVVRDLNPKTGKLVAAHRCT-GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
                 R      G    +  C      C  Q + RL    SR A  ++G+G+       
Sbjct: 151 -----ERSKPVPPGSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRALH 205

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           ++            IF+       ++ +I N  G        ++   N  R  S  R+I 
Sbjct: 206 QTHR-------FEHIFSWLA---LTSAQIANTPGVAKGKSEQIWRQFNLARRQSFTRWIM 255

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           ++ I       A   A    S++                     ++P  G+  A  ++++
Sbjct: 256 AMDIPL---TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGERRAGRVIDW 302

Query: 616 YQNPRNICAVEALLKEVSPSIG 637
             NP+       L  +  P  G
Sbjct: 303 RNNPQINALSRWLATQHIPGFG 324


>gi|189426842|ref|YP_001949941.1| NAD-dependent DNA ligase [Ralstonia phage RSL1]
 gi|189233154|dbj|BAG41511.1| NAD-dependent DNA ligase [Ralstonia phage RSL1]
          Length = 625

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 123/691 (17%), Positives = 235/691 (34%), Gaps = 107/691 (15%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
           ++        YY+    I+ D+E+DAL+     +   + +L ++        K+  E+  
Sbjct: 12  KKLYKQARVAYYEK-AEIMTDAEFDALEDSIRRLDPKWDELQKTGT------KV--EVKN 62

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
              +V       S  KI+           + ++  K     + + +  K+DGT + + Y 
Sbjct: 63  KKQEVKLLEFMPSKNKIY--------PEHVAKYAAKHASVEV-WNVSHKLDGTSLQLAYR 113

Query: 145 KGKFVYAALRGDGHSGEDVS---ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            G+      RGDG  G+D+S     +  I  IP  +  +   ++  R E  +    F   
Sbjct: 114 GGRPWKLITRGDGALGKDISFFLPHLVKIGMIPDHIKTDA-LVVVFRCEGIMPVAVF--- 169

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
                      Y N R  A+G+  R +       ++  V  +          Q E +   
Sbjct: 170 ----EKKWAGKYDNARQLANGVFNRQDMHPALADVHMVVLSVYGMK------QGEGIMYA 219

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-R 320
           +  GF V    R              +   R    Y++DGL+         + +   +  
Sbjct: 220 KRQGFHVVP-TRMLKGRLDAEVLTRLLNKEREASIYEMDGLIL----VPSPRIMSYTSPD 274

Query: 321 SPRWMISHKFAEKQ--ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            P+ + + KF +++  A   +  +  Q  R     P   ++P  + G ++TN T HN  +
Sbjct: 275 RPKDITAFKFNDEENAAEVPVESVVWQKTRLHRWQPKITIKPTFMDGVMVTNVTAHNPAW 334

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           +K            R I  G  V V R+G VIPK+V ++          F  P    +  
Sbjct: 335 MK-----------ERGIGPGAIVKVLRSGGVIPKIVGVVKK------GKFQPPPGPYVED 377

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            R+ R                         +  + HF++     IE L  + +   ++  
Sbjct: 378 GRLFRMTEGDASTE----------------VRGIHHFMT--TLGIELLASKTITKLYEEG 419

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR--RNISLERFIFS 556
                     D   L               G G      +   + +     I+L   + +
Sbjct: 420 -----FTTVYDYIDL---AINGDEGRLQTAGIGVKMSQKIQAELERVLGSTINLRLLMVA 471

Query: 557 LGI--RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            G     +G     +L    +S +   +  +  +         L +V    DI  +A+++
Sbjct: 472 SGCFRDGIGRRKLEALEAAGISMRFLLKSSDFALRG------ELSKVKGFSDITIEAVID 525

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
                R        L EV  S+ + +K V+ ++  + + +TG     +    ++ V   G
Sbjct: 526 GVNAFRKWFDEVRELLEVDGSLPKAKKVVTGKLTGQFVSWTG----YRNKDEEQKVEAWG 581

Query: 675 AVVS--AILSRKTDIIIVGD--NPGSKLEKA 701
             +        KT I++        SK+EKA
Sbjct: 582 GTIVPFGS---KTTILLYSPSGKTSSKVEKA 609


>gi|300939287|ref|ZP_07153961.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli MS 21-1]
 gi|300455794|gb|EFK19287.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli MS 21-1]
          Length = 209

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 31/218 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S+ +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 23  CPAWSLARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 82  DAMMPPLN----------GAVMHPVAHTGVSKMADKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +PR +S  +     ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTHKVRLISAVPRTVSGPLANST-LQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR 226
           GE+++ +   +          +    N R   +G++ R
Sbjct: 180 GEIFLKREGHIQQ--------QMGGINARAKVAGLMMR 209


>gi|126174866|ref|YP_001051015.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
 gi|125998071|gb|ABN62146.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
          Length = 145

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 8/138 (5%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  + 
Sbjct: 12  EDVTPENASQVMQALSQPLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 71  --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRVTDK-----VGEVSFC 123

Query: 130 LEPKIDGTMITIRYEKGK 147
            EPK+DG  ++I Y  G 
Sbjct: 124 CEPKLDGLAVSILYRNGV 141


>gi|300939286|ref|ZP_07153960.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 21-1]
 gi|300455793|gb|EFK19286.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 21-1]
          Length = 329

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 133/373 (35%), Gaps = 58/373 (15%)

Query: 256 EMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD-EFSLQK 313
           + L+++   GF +     R       +    NE     + LP+  DG+V +   E   + 
Sbjct: 3   DRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWK--AKLPFVTDGVVVRAAKEPESRH 60

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            L  +A    W+++ K+        +  I   +G++G ++ VA L PV +    +    +
Sbjct: 61  WLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNI 117

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFP 431
            +    +             DI  GD++LV  AG+ IP++ D++    ER          
Sbjct: 118 GSVRRWQ-----------EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK-------- 158

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
                          P   +  +         C  Q + RL    S+    ++G+G+   
Sbjct: 159 -------------PTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIGEAGW 205

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               ++            IF+       +  +++N  G        L+   N  R     
Sbjct: 206 RALHQTHR-------FEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNLARQQPFT 255

Query: 552 RFIFSLGIRH----VGAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLSLIRVPLV 604
           R++ ++GI      + A   RS ++   S + F Q++       A    +W    ++  +
Sbjct: 256 RWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKENAQIKKL 315

Query: 605 GDIIAQAIVEFYQ 617
           G  +A   +  ++
Sbjct: 316 GSWLAAQQITGFE 328


>gi|159487072|ref|XP_001701559.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158271500|gb|EDO97317.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 623

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 114/251 (45%), Gaps = 35/251 (13%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  LE  ++ H + Y+    P I D+ YD LKRR   +A        +ED   P   +G 
Sbjct: 1   MKLLEAALTKHRELYFNQ-TPEISDAAYDELKRRFRDLAARLRG-VAAEDVAFP---VGA 55

Query: 81  EMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW---QKKDDNSIFFTLEPKID 135
            +    +L KV H++P  SL  + + +++  ++ R        ++    S  + +EPK+D
Sbjct: 56  PVAAASALRKVKHTVPMTSLAAVNSRQEVEAWMGRTLARLAQLRQGAAGSWGWVVEPKVD 115

Query: 136 GTMITIRYEKG-----------KFVYAALRGDGHSGEDVSACIRA--IPTIPRVLSLNIP 182
           G  + + Y +            +   AA RGDG  GEDV+       I  +P   ++   
Sbjct: 116 GLAVRVVYRRVAKGDGGGGAAYELQEAATRGDGEVGEDVTHNALHGGIQGLPLRFTMPPG 175

Query: 183 -----------EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD 231
                      E +EVRGEVY+   D   +N E  A G   +AN RNAASG LR L+P +
Sbjct: 176 AATSAPTSAAPEWVEVRGEVYVRIADLQQVNKEAEAAGGSGFANARNAASGGLRLLDPAE 235

Query: 232 I-TRYLNFFVH 241
              R L+F  +
Sbjct: 236 CRRRRLSFVAY 246



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 22/234 (9%)

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG---GLACSAQQ 468
           +V+ ++   R P AQP++ P+ CP C    VR     +        C     G  CSAQQ
Sbjct: 281 EVMRVLPELRPPGAQPWALPACCPACGGP-VRLQPAASKDAGEQLLCVAAEQGAGCSAQQ 339

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
              L HF  +      GL    +     +      +    D +T   R   S      + 
Sbjct: 340 ERMLLHFA-KVCLKGSGLAAGVMQALTAAGLLEGGL---PDFYTRLDRATLSA-----LP 390

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           GFG      +   +   +++     +  L I+ VG   A++L   Y            + 
Sbjct: 391 GFGAARAEAIAARVAASKSMRSAELLHGLNIKSVGETAAKALGVAYPRL---------VP 441

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
                 W  +     +G +++Q +  + + P N   ++ L +     +      
Sbjct: 442 ELQRASWQEIKAASGLGQVVSQNVETWMRQPANQQLLQRLSQAGVACVASAPAP 495



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +   ++  TGTL+          +   GA     +   T +++VG + GSK ++A + GV
Sbjct: 557 VAGMRICVTGTLE--------AMLEASGAEFHKDVKSDTQVLVVGADAGSKRDRAAKKGV 608

Query: 707 KIMNEEQFLF 716
           ++M E  F  
Sbjct: 609 RVMEERDFWQ 618


>gi|167950972|ref|ZP_02538046.1| DNA ligase, NAD-dependent [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 256

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 101/261 (38%), Gaps = 22/261 (8%)

Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524
             Q+ ++        A  I  +G                 R   D+  L   ++      
Sbjct: 2   PWQRSKQTSLARFLFALGIREVGDATAAALA---------RHFRDLQPLMTAERDDFIHD 52

Query: 525 ENILGFGDVSVTNLYDSINKRRNIS-----LERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
             I G G  +   + D++            L  ++  + +R +   +A  L++ + S + 
Sbjct: 53  SGIKGVGASTAQAICDALAGPLPAEPLAGGLADWLAGMNVRGLNRAVAERLSERFGSLEA 112

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIG 637
             Q    ++            V  VG I+A  IV F++ P N   +E L +         
Sbjct: 113 LRQATPELLRR-----EQRSLVEGVGPIVADHIVTFFRQPHNQEVIEKLRQVGVNWEEEA 167

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
             E    + +  K +V TGTL +  R   +  +  LG  V+  +S+ TD +I G   GSK
Sbjct: 168 PPETPAEAPLLGKTVVLTGTLSRP-RSAIKAELQALGGQVTGSVSKNTDYLIAGAEAGSK 226

Query: 698 LEKAQQLGVKIMNEEQFLFLL 718
           L KAQQLGV+I++E     LL
Sbjct: 227 LSKAQQLGVEILDEAGLARLL 247


>gi|9631366|ref|NP_048233.1| ORF MSV162 putative NAD+ dependent DNA ligase, similar to Thermus
           thermophilus SW:P26996 [Melanoplus sanguinipes
           entomopoxvirus]
 gi|4049719|gb|AAC97679.1| ORF MSV162 putative NAD+ dependent DNA ligase, similar to Thermus
           thermophilus SW:P26996 [Melanoplus sanguinipes
           entomopoxvirus]
          Length = 522

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 108/612 (17%), Positives = 220/612 (35%), Gaps = 122/612 (19%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           L  + + I   ++ YY   + +I D  YD +    + +   +PD       N    KIG 
Sbjct: 22  LEDISEIIKILNEKYY-EGETLISDEIYDKII---EYVNKKYPD-------NDITKKIGY 70

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E      KV       S  KI++ ++ +KF   I ++       +    +  K DG  + 
Sbjct: 71  EPK---NKVKLPYYMGSENKIYDEDE-KKFNNWIEKY------GTSSIIVSVKADGISVL 120

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIP-TIPRVLSLNIPEIIEVRGEVYISKNDFL 199
               K K      RGDG+ G+D+S  ++ +   +P +          +RGE+ I+K+   
Sbjct: 121 WDIGKNKL---YTRGDGNYGKDISWFLKYMNYDLPEL------SDYVIRGELVINKD--- 168

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT---DITRYLNFFVHGLGKTSEIFAKGQYE 256
                            RN  +G +  L      DI + + F  + +        + Q++
Sbjct: 169 ---------------KTRNDVAGAINSLEANRNEDILKEIYFVGYEILNPR-FNQENQFK 212

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L++ +           +  +   +   Y E+K     + YDIDGLV + +  +     G
Sbjct: 213 KLKQHKIRHIKAMKYDIEDVSLECLSELYQELK---PKMKYDIDGLVIRNNNVNDPITDG 269

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                P W  ++K      +T++L++  QI +     P+A LEP+ +    I   + +N 
Sbjct: 270 N----PPWSFAYKPPNTIYTTKVLNVIWQISKQNKYIPIAELEPIKLENKTIKRVSCYNA 325

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
            ++         +           V ++  G  IPK+V++I                 P+
Sbjct: 326 KFVTENGIGTDAI-----------VEIEYRGGAIPKLVNVIK----------------PV 358

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                V + +   GK++  H     +      ++ +  F      +I+   K+ ++  + 
Sbjct: 359 ----TVDESDLPDGKIIDNHLY-APIDSKESNIKIISQFF--KILSIQAPNKKVIEHLYD 411

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      I    ++      +   TTK  N       +  +  + I K   ISL   I +
Sbjct: 412 NG-----ITNIVELLKSDLTELLDTTKKIN------KNALHSIN-IAKSIEISLPLAIAA 459

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L I ++  ++   +   +  +    Q+                ++  +  + A+ I    
Sbjct: 460 LSIPNLTEKVLEKIYNTHKDFLTTKQDFE--------------KIKGINKLSAEKIKS-- 503

Query: 617 QNPRNICAVEAL 628
           Q  +N   ++  
Sbjct: 504 QILKNKNMIDEY 515


>gi|115380146|ref|ZP_01467179.1| hypothetical protein STIAU_7665 [Stigmatella aurantiaca DW4/3-1]
 gi|115362851|gb|EAU62053.1| hypothetical protein STIAU_7665 [Stigmatella aurantiaca DW4/3-1]
          Length = 150

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 11/156 (7%)

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A++LA+ +                   D  +L RV  VG  +AQ +  F+Q P+N  
Sbjct: 1   EATAKALAEAFP----------EAPLLYTADMEALTRVKDVGPTMAQVLHAFFQEPQNRA 50

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           A++ALL     +    + N       K +V TG +  + R +A+E + + G  VS  +SR
Sbjct: 51  AIDALLA-AGVTPAPPQVNTGGPFAGKTVVLTGGMTGMSRDQAKEEIERRGGKVSGSVSR 109

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KTD ++ G++ GSKL+KAQ+LGV++++E+ FL LLQ
Sbjct: 110 KTDFVVAGEDAGSKLKKAQELGVRVLDEQAFLKLLQ 145


>gi|149912310|ref|ZP_01900877.1| NAD-dependent DNA ligase [Moritella sp. PE36]
 gi|149804613|gb|EDM64677.1| NAD-dependent DNA ligase [Moritella sp. PE36]
          Length = 171

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              ++ +L +F++SLGIR VG   A +LA   L+     +               LI + 
Sbjct: 1   KAAKHTTLAKFLYSLGIREVGEATAANLANDLLTLDAIKKA----------SVERLILIS 50

Query: 603 LVGDIIAQAIVEFYQNPRNICAV-EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            VGDI+A+ I  F++   N+  + + L   +S      ++     +     V TGTL  I
Sbjct: 51  DVGDIVAKHIYYFFREAHNLEVIVQLLEAGMSWDDVAVKEASQQPLLGAIYVITGTLVNI 110

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R  A+  +  LGA V+  +S+KT  ++ G   GSKL KAQ+LG+ I+ E+  L LL
Sbjct: 111 SRADAKTRLQDLGAKVAGSVSKKTTALVAGPAAGSKLTKAQELGIDILTEDDLLALL 167


>gi|291562521|emb|CBL41337.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [butyrate-producing bacterium SS3/4]
          Length = 169

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 18/186 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   K +  L   +S     YYQ S+ I+ + EYD L      +         +     
Sbjct: 1   MDDKIKRMKELIPILSEAAKAYYQESREIMSNFEYDRLYDELLKLEQE----TGTVFAGS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G E+   L K  H  P LSL K  ++++LR+++                  L  K
Sbjct: 57  PTQKVGYEVLSELPKERHERPMLSLNKTKSVDELREWL------------GGQTGLLSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  + + YE G    A  RG+G  GE +++  R    IP  +       + +RGE  I
Sbjct: 105 MDGLTVVLTYEDGVLAKAVTRGNGEIGEVITSNARTFINIPTTI--PYKGQLILRGEAVI 162

Query: 194 SKNDFL 199
           S +DF 
Sbjct: 163 SYSDFE 168


>gi|238764312|ref|ZP_04625263.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
 gi|238697463|gb|EEP90229.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
          Length = 318

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 123/378 (32%), Gaps = 61/378 (16%)

Query: 264 LGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
           +GFP+         +   +  +      +   LP+  DG+V + D+    +     A   
Sbjct: 1   MGFPLTAYYSESVFSGSDVAHWRKLWFEM--PLPFVTDGVVIRQDDEPAGRYW--HATPG 56

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
            W ++ K+   Q  T + DI   +GRTG +T + ++ PV I    I    + +    K  
Sbjct: 57  NWSVAWKYPPPQQITEIKDIHFTVGRTGKVTAILQVVPVKIDDKWIRRVNVGSIARWK-- 114

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                      DI  GD+V +  AG  IP++ +++   R       + P+     Q    
Sbjct: 115 ---------QWDIVPGDQVTITLAGLGIPRLDNVVW--RVSQRDEITPPAANKFHQLSCF 163

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           R L+               + C  Q L RL      +  +++ +G               
Sbjct: 164 RLLS---------------VECKPQFLARLAWLSGANGLDMQNVGSGLWRELV----HHG 204

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            I    D  +L      S  +I  + G G V    +Y      R     +++ +LG    
Sbjct: 205 LINSLVDWLSL------SIEQIAAVPGIGQVRAEKIYLQFQLARQQPFPQWLQALGFPQ- 257

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
                  +   + S Q                      +  +G + A+ I  F  +P   
Sbjct: 258 ----EIPIDSQWYSLQQR-------------SITEWRLISGIGAVRAKQINHFLHHPEIQ 300

Query: 623 CAVEALLKEVSPSIGRHE 640
              + L ++        E
Sbjct: 301 MMADFLSQQGITGFRPEE 318


>gi|238764311|ref|ZP_04625262.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
 gi|238697462|gb|EEP90228.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
          Length = 243

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 90/239 (37%), Gaps = 30/239 (12%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S E+   E++ LE+++   D  Y+Q    ++ D+ YD L+ +              
Sbjct: 26  CTKWSEERMSGEINLLEKQLFLWDVAYHQQGISLLPDNVYDQLQDKLHGWRSCHG---LP 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +  N         +     K  H +    L+K+ +   L  ++      W          
Sbjct: 83  DKKNS-------TLIAGNGKSPHPVAHTGLKKLKDETALIDWMAGRKNLW---------- 125

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ Y+ G       RG+G  G+D +     I  IP+ ++   P ++ ++
Sbjct: 126 -VQPKIDGVAVTLVYQAGNLTQILSRGNGLKGQDWTDKAPFISAIPQYIA-AAPPLLTLQ 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           GE+++                +    N R + +G L R + T +   L  F+       
Sbjct: 184 GELFLQMEGHQQ--------AQSGGVNARASVAGALMRKSATPLLAKLGIFIWAWPDGP 234


>gi|332084490|gb|EGI89685.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           dysenteriae 155-74]
 gi|332084829|gb|EGI90012.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           boydii 5216-82]
          Length = 195

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 23/192 (11%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR- 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN            V H +    + K+ +   L  ++      W          
Sbjct: 81  DVMMPPLN----------GAVMHPVAHTGVRKMADKNALSLWMREHSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQ 178

Query: 189 GEVYISKNDFLA 200
           GE+++ +   + 
Sbjct: 179 GEIFLKREGHIQ 190


>gi|145640786|ref|ZP_01796369.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|145274712|gb|EDK14575.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21]
          Length = 150

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 11/158 (6%)

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   A +LA ++ +            A  + +   L +VP VG+++A  I  F++   N
Sbjct: 1   MGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVANRIFIFWREAHN 50

Query: 622 ICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           +  VE L+ + V       ++   +  ++K +V TGTL ++ R++A+  + QLGA VS  
Sbjct: 51  VAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKALLQQLGAKVSGS 110

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 111 VSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 148


>gi|289804479|ref|ZP_06535108.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 119

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGT 137
           +DG 
Sbjct: 116 LDGL 119


>gi|58699501|ref|ZP_00374229.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533981|gb|EAL58252.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 143

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 12/146 (8%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
             L+ +I+YH+  Y+Q +KP I D+EYD LK++   I    P++  +++       +G  
Sbjct: 9   EKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIYATQE------SVGAP 59

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
            +    KV H  P LSLE  ++ + + KF+++I RF     ++ I    EPKIDG   + 
Sbjct: 60  PDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFL---IEDKIEILCEPKIDGLSFSA 116

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACI 167
            YE G+FV AA RGDG  GEDV+  +
Sbjct: 117 IYEDGRFVKAATRGDGFVGEDVTHNV 142


>gi|32396683|gb|AAP49298.1| NAD-dependent DNA ligase [Bacillus coagulans]
          Length = 121

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 52/121 (42%), Positives = 75/121 (61%), Gaps = 1/121 (0%)

Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+P     R L+ FV+GL    E+  +   E L  ++ LGF VN   
Sbjct: 1   ANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIESHSEALDYLQALGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R+      ++++ NE    R  LPY+IDG+V KVD F+ Q++LG  A+SPRW I++KF  
Sbjct: 61  RRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKSPRWAIAYKFPA 120

Query: 333 K 333
           +
Sbjct: 121 E 121


>gi|32396673|gb|AAP49294.1| NAD-dependent DNA ligase [Geobacillus thermodenitrificans]
          Length = 121

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 1/121 (0%)

Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L       R L+ FV+GL    E+  +   E L  ++ LGF VN   
Sbjct: 1   ANPRNAAAGSLRQLESKVAASRQLDLFVYGLANAEELGIESHSEALDYLQALGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R+      ++++ NE    R  LPY+IDG+V KVD F+ Q++LG  A+SPRW I++KF  
Sbjct: 61  RRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKSPRWAIAYKFPA 120

Query: 333 K 333
           +
Sbjct: 121 E 121


>gi|289679601|ref|ZP_06500491.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           FF5]
          Length = 261

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 16/186 (8%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
               + +LE  I  L I  VG   A+ LA  + + +          A  + DWL + +  
Sbjct: 87  EFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLE----------AIISADWLDMRQA- 135

Query: 603 LVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL 658
            + +  A+++ +F+ +  N     A+EA LK+        +K V    +  +  V TG+L
Sbjct: 136 -LSEKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSL 194

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 195 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 254

Query: 719 QQYNTT 724
            +    
Sbjct: 255 TELGVA 260



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 15/107 (14%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGI  VG E A+ LA+   S +   Q +  ++ +          +P VG  +
Sbjct: 1   TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 50

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENK 650
           A  I  F+++  N   ++ALL E    +        E   S+ +E  
Sbjct: 51  AYEIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 97


>gi|32396667|gb|AAP49291.1| NAD-dependent DNA ligase [Bacillus sp. IMG-2]
          Length = 107

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 8/115 (6%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD   R    +   +P+L   + P+ P  ++GG +  +  KV H +P LSL   +N 
Sbjct: 1   DAEYDRFMRELIELEEKYPEL---KTPDSPSQRVGGAVLDAFRKVAHRVPMLSLANAFNE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159
           +DLR F  R+      +    + + +E KIDG  +++RYE G FV  + RGDG +
Sbjct: 58  QDLRDFDRRVR-----QAVGDVEYVVELKIDGLAVSLRYENGLFVQGSTRGDGTT 107


>gi|330955486|gb|EGH55746.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae Cit 7]
          Length = 296

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 16/186 (8%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
               + +LE  I  L I  VG   A+ LA  + + +          A  + DWL + +  
Sbjct: 123 EFAASTTLEGMIDKLHIPSVGPGAAQKLADRFGTLE----------AIISADWLDMRQA- 171

Query: 603 LVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL 658
            + +  A+++ +F+ +  N     A+EA LK+        +K V    +  +  V TG+L
Sbjct: 172 -LPEKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSL 230

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L
Sbjct: 231 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 290

Query: 719 QQYNTT 724
            +    
Sbjct: 291 AELGVA 296



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 22/155 (14%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           PAD++ L+  Q           GF ++S   L  +I   R  +L RFI++LGI  VG E 
Sbjct: 1   PADLYKLKYEQIIDLE------GFAEISSNKLLKAIADSRQPTLARFIYALGIPDVGEET 54

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A+ LA+   S +   Q +  ++ +          +P VG  +A  I  F+++  N   ++
Sbjct: 55  AKVLARSLASLERVQQALPEVLTY----------LPDVGLEVAYEIHSFFEDEHNRSVID 104

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           ALL E    +    +         +   + TL+ +
Sbjct: 105 ALLGECGLQLQDQGEL------GAEFAASTTLEGM 133


>gi|32396672|gb|AAP49293.1| NAD-dependent DNA ligase [Geobacillus thermodenitrificans]
 gi|32396682|gb|AAP49297.1| NAD-dependent DNA ligase [Bacillus coagulans]
          Length = 107

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 8/115 (6%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD L +   AI   +P+L  S   + P  +IGG    +  KVTH +P +SL   ++ 
Sbjct: 1   DAEYDRLMQELMAIEEQYPELKTS---DSPTQRIGGPPLEAFRKVTHVVPMMSLANAFDE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159
            DLR F  R+      ++     +  E KIDG  +++RYE G FV  A RGDG +
Sbjct: 58  GDLRDFDRRVR-----QEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDGTT 107


>gi|32482045|gb|AAP49289.1| NAD-dependent DNA ligase [Bacillus sp. IMG-1]
          Length = 107

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD L +   AI   +P+L  S   + P  +IGG    +  KV H +P +SL   +  
Sbjct: 1   DAEYDRLMQELIAIEEQYPELKTS---DSPTQRIGGPPLEAFRKVAHPVPMMSLANAFGE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159
            DLR F  R+      ++     +  E KIDG  +++RYE G FV  A RGDG +
Sbjct: 58  GDLRDFDRRVR-----QEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDGTT 107


>gi|32482046|gb|AAP49290.1| NAD-dependent DNA ligase [Bacillus sp. IMG-1]
          Length = 121

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 1/121 (0%)

Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA G  R+L P     R L+ FV+GL     +      E L  ++ LGF VN   
Sbjct: 1   ANPRNAAGGSFRQLEPKVAASRQLDLFVYGLADAEALGIASHSEALDYLQALGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R+      ++++ +E    R  LPY+IDG+V KVD F+ Q+ LG  A+SPRW I++KF  
Sbjct: 61  RRCANIDEVIAFISEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKFPA 120

Query: 333 K 333
           +
Sbjct: 121 E 121


>gi|32396688|gb|AAP49300.1| NAD-dependent DNA ligase [Bacillus circulans]
          Length = 121

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+P     R+L+ FV+ L    E+        L  ++ LGF VN   
Sbjct: 1   ANPRNAAAGSLRQLDPKIAASRHLDLFVYSLANAEELGIDSHSAALDYLQTLGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R+      ++ + +E    RS LPYDIDG+V KVD F  Q+ +G  A+SPRW I++KF  
Sbjct: 61  RRCANIDEVIRFVSEWHEKRSHLPYDIDGIVIKVDSFEQQESVGATAKSPRWAIAYKFPA 120

Query: 333 K 333
           +
Sbjct: 121 E 121


>gi|32307200|gb|AAP79093.1| NAD-dependent DNA ligase [Bacillus catenulatus]
          Length = 121

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA G  R+L P     R L+ FV+GL    E+      E L  ++ LGF VN   
Sbjct: 1   ANPRNAAVGSFRQLEPKVAASRKLDLFVYGLANAEELGIASHSEALDYLQELGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R+      ++++ +E    R  LPY+IDG+V KVD F+ +++LG  A+SPRW I++KF  
Sbjct: 61  RRCANIDEVIAFISEWHEKRPQLPYEIDGIVIKVDSFAQRRELGATAKSPRWAIAYKFPA 120

Query: 333 K 333
           +
Sbjct: 121 E 121


>gi|323193166|gb|EFZ78384.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
          Length = 180

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 21/168 (12%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22  CPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PLN              H +    + K+ + + + +++      W          
Sbjct: 82  TPVSPPLN----------GTTRHPVAHTGVRKLADRQAVEQWMRGRSELW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
            ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+ 
Sbjct: 122 -VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQT 168


>gi|195940543|ref|ZP_03085925.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 98

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRV 98


>gi|32307199|gb|AAP79092.1| NAD-dependent DNA ligase [Bacillus catenulatus]
          Length = 107

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 8/115 (6%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD L +   AI   +P+L  S   + P  +IGG    +  KVTH +P +SL   +  
Sbjct: 1   DAEYDLLMQELIAIEEQYPELKTS---DSPTQRIGGPPLEAFRKVTHRVPMMSLANAFGE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159
            DLR F  R+      ++     +  E KIDG  +++RYE G FV  A RGDG +
Sbjct: 58  GDLRDFDRRVR-----QEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDGTT 107


>gi|6561410|gb|AAF16907.1|AF173987_5 DNA ligase [Rhodothermus marinus DSM 4252]
          Length = 154

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +EA+  ++A    + L + ++ H   YY    P+I D++YD L +    +   FP+L  
Sbjct: 29  DLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV- 87

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI- 126
              P+ P  ++GG       KV H  P LSL   +  ED+R +  R  R   ++    + 
Sbjct: 88  --TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAERLGQPVQ 145

Query: 127 -FFTLEPKI 134
              T E KI
Sbjct: 146 PAVTAELKI 154


>gi|153834101|ref|ZP_01986768.1| DNA ligase [Vibrio harveyi HY01]
 gi|148869566|gb|EDL68561.1| DNA ligase [Vibrio harveyi HY01]
          Length = 124

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 2/124 (1%)

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFT 655
           +I V  +G I+A+ I  F+   +N   V+ LL +    P I   ++ V   +E K +V T
Sbjct: 1   MIEVQDIGVIVAKHITTFFGEEKNQAVVQDLLAQGINWPEIAAPQEGVELPLEGKTVVLT 60

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL ++ R +A+E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L
Sbjct: 61  GTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLL 120

Query: 716 FLLQ 719
            L++
Sbjct: 121 NLMK 124


>gi|213850350|ref|ZP_03381248.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 110

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN 107


>gi|33322831|gb|AAQ07151.1|AF496461_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis]
          Length = 128

 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 18/142 (12%)

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            ++PV + G  +  A+LHN D +  L           D+R+G  V + +AG++IP++ ++
Sbjct: 1   VMDPVRLXGTTVARASLHNPDLLAKL-----------DVRLGXTVKLHKAGDIIPEISEV 49

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           ++++R  D+ P+  P+ CP C   +V            A RC    +C AQ  E + HF 
Sbjct: 50  VLSKRPEDSVPYEVPTKCPSCGEDLVHLNEE------VALRCINP-SCPAQVEEGITHFA 102

Query: 477 SRDAFNIEGLGKQQLDFFFKSE 498
           SR A NI GLG + +      +
Sbjct: 103 SRQAMNIAGLGPKIVKQLIAKD 124


>gi|32396687|gb|AAP49299.1| NAD-dependent DNA ligase [Bacillus circulans]
          Length = 108

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 7/114 (6%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD   +   A+   +P+       + P  ++GG+   +  KV H IP LSL   ++ 
Sbjct: 1   DAEYDLFMQELIALEEQYPEFKTK---DSPSQRVGGQPLDAFQKVEHRIPMLSLANAFHE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
            DLR F  R+ +       + + +  E KIDG  +++RYE G FV  A RGDG 
Sbjct: 58  GDLRDFDRRVRQEVG----DDVAYVCELKIDGLAVSVRYENGYFVQGATRGDGT 107


>gi|289679597|ref|ZP_06500487.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           FF5]
          Length = 102

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
           P  ++G     +  +V H +P LSL   +   D+ +F  R+    
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTAGL 102


>gi|32396668|gb|AAP49292.1| NAD-dependent DNA ligase [Bacillus sp. IMG-2]
          Length = 121

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNA++G LR+L+P     R L+ FV+ + +  +       E L  +  LGF  N   
Sbjct: 1   ANPRNASAGSLRQLDPKIAAKRNLDIFVYNIAELGDTGVSSHSEALDLLDELGFKTNRER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R+      ++   +++    S LPYDIDG+V KVD    Q+ LG  A+SPRW I++KF  
Sbjct: 61  RKCKNIDEVIELLDQLLEKHSQLPYDIDGVVIKVDSLRQQEALGATAKSPRWAIAYKFPA 120

Query: 333 K 333
           +
Sbjct: 121 E 121


>gi|1816524|gb|AAB42062.1| DNA ligase [Escherichia coli]
          Length = 90

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED 106
           P  ++G     +  ++ H +P LSL+ +++ E 
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEES 90


>gi|117306975|emb|CAL25732.1| hypothetical protein [Bacillus halodurans]
          Length = 143

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 4/129 (3%)

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA---LLKEVSPSIGRHEKNVSSEIE 648
           N     LI VP VGDI+A +IV F+++  N  +V+          P       +  S   
Sbjct: 2   NATREELIAVPDVGDIVADSIVSFFEDEVNKMSVQRLLEFGVHPQPIEKPKPVSTDSYFY 61

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R +A   +   GA V+  +S+KTD++I G+  GSKL KA+QLG+ +
Sbjct: 62  GKTVVLTGTLHLMTREEATAKLEACGAKVTGSVSKKTDLVIAGEKAGSKLAKAEQLGIPV 121

Query: 709 M-NEEQFLF 716
           + +E + + 
Sbjct: 122 ITDENELVK 130


>gi|217032017|ref|ZP_03437518.1| hypothetical protein HPB128_187g44 [Helicobacter pylori B128]
 gi|216946327|gb|EEC24933.1| hypothetical protein HPB128_187g44 [Helicobacter pylori B128]
          Length = 157

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 98/173 (56%), Gaps = 19/173 (10%)

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I +LGI H+G   +++LA+Y L          N++  +  ++L +      G  +A+++
Sbjct: 1   MINALGIEHIGKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSL 47

Query: 613 VEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           V FY +  N   + +L + ++P    +   ++  SS   NK +V TGTL K ++  AQ  
Sbjct: 48  VNFYAS--NQEFIRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-M 104

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  LGA +S+ +S KTD +I G+NPGSKL  A++ GV ++NEE+ L  L++ +
Sbjct: 105 LENLGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKELD 157


>gi|57168175|ref|ZP_00367314.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
 gi|57020549|gb|EAL57218.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
          Length = 141

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A+ LA  +   +   Q +            +   +   G+ +A ++ EF  +  N   +
Sbjct: 2   AAKKLALSFGK-EWHKQSL-----------EAYANLEGFGEQMALSLCEF--SRVNSARI 47

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +   K ++    + +    S I  K  V TG L +  R + +  +  LG  VS  +S+KT
Sbjct: 48  DEFYKLLNLKEQKVQIQEDSVIFGKTFVITGALSRP-RDEFKNLIESLGGKVSGSVSKKT 106

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           D ++ G   GSKL+KAQ+LGVK ++E +F  L+++
Sbjct: 107 DYVLFGQEAGSKLDKAQELGVKCIDENEFNELIEK 141


>gi|207723347|ref|YP_002253746.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial
           sequencecentral part) protein [Ralstonia solanacearum
           MolK2]
 gi|206588546|emb|CAQ35509.1| probable dna ligase (polydeoxyribonucleotide synthase [nad+])
           (partial sequencecentral part) protein [Ralstonia
           solanacearum MolK2]
          Length = 228

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 19/167 (11%)

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQE----INNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           LG+  + A  ++ LA    +    A      +  + A  +   L  +        +AQ  
Sbjct: 70  LGVPKLTATRSKQLATLVPTLAQLATADAAQLEGLPAEVSASLLGWLEADGHRARLAQ-- 127

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
                    + A+ A L    P+    E      +  K +V TGTL  + R  A+  +  
Sbjct: 128 ---------LDALRAELLAAMPA----ETAEDGALSGKTVVLTGTLPNLTRDAAKAMLEA 174

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GA VS  +S+KTD ++ G+  GSKL KA++LGVK+++E   L LLQ
Sbjct: 175 AGAKVSGSVSKKTDYVVAGEEAGSKLAKAEELGVKVLDEAGMLALLQ 221



 Score = 38.1 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTL 658
           +P VG  +A+AI +F+  P+N  A++ALL       G H  +    S++E  +L     +
Sbjct: 13  LPDVGATVAEAIADFFDEPKNQQALDALLAAGVAPQGEHPPSAKLRSQLEPAELYAVLGV 72

Query: 659 QKIQRHKAQEYVT 671
            K+   ++++  T
Sbjct: 73  PKLTATRSKQLAT 85


>gi|213859393|ref|ZP_03385097.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 109

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 3/107 (2%)

Query: 615 FYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           F+    N   +    A        +  + + + S    K +V TG+L ++ R  A+  + 
Sbjct: 1   FFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAKARLV 60

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 61  ALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 107


>gi|213024616|ref|ZP_03339063.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 130

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 13/140 (9%)

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A  LA Y+ + +       + +           +VP VG ++A  +  F+    N   +
Sbjct: 1   TAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVATHVFNFFAEESNRDVI 50

Query: 626 E---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
               A        +  + + + S    K +V TG+L ++ R  A+  +  LGA V+  +S
Sbjct: 51  GQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVS 110

Query: 683 RKTDIIIVGDNPGSKLEKAQ 702
           +KTD++I G+  GSKL KAQ
Sbjct: 111 KKTDLVIAGEAAGSKLAKAQ 130


>gi|196234149|ref|ZP_03132982.1| DNA ligase (NAD(+)) [Chthoniobacter flavus Ellin428]
 gi|196221800|gb|EDY16337.1| DNA ligase (NAD(+)) [Chthoniobacter flavus Ellin428]
          Length = 122

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   +  +  L Q++  H+  YY  + P I D++YDAL R    +  A P+      P+ 
Sbjct: 1   MPNVQTRIEELRQQLEEHNRRYYDEATPTISDADYDALFRELRDLEDAHPEFI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLR 108
           P  ++G +      +V H++P LSL+ ++  E LR
Sbjct: 58  PTRRVGEKATAGFRQVRHAVPMLSLDNLFAKEGLR 92


>gi|325474100|gb|EGC77288.1| hypothetical protein HMPREF9353_01638 [Treponema denticola F0402]
          Length = 207

 Score =  133 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 22/224 (9%)

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              +    D++TL   +  +  ++  +      S   +Y +++ ++ ISL  FI    I 
Sbjct: 1   MGRVNSITDLYTLTVEELAAIDRMGKL------SAEKVYKALHSKKEISLTEFIAGFDIE 54

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--N 618
            +G  +   L +   +      ++N ++  +  D+     V   G +++  +V       
Sbjct: 55  GIGETMVEKLEEAGFN------DLNELLRASEADFA---NVYQFGQVLSHTLVTNLSILK 105

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                 ++    ++ P +   E  V   ++     FTG L  ++R +A+  V + G  V 
Sbjct: 106 DEMTGLIDKGYIKIKPQLTSEEGAV---LKGLSFCFTGELNTMKRAQAEALVKEKGGTVK 162

Query: 679 AILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + + +    ++    D+  SK +KAQ+LG  I+ EE FL L+ +
Sbjct: 163 SSVVKGLSYLVTNTPDSGSSKNKKAQELGTAIITEEAFLNLIGK 206


>gi|255019090|ref|ZP_05291216.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL F2-515]
          Length = 99

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 52  KRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111
            +    I  A P+      P  P  ++GGE+     KV H  P LSL   +N EDL  F 
Sbjct: 1   MQELLKIEEAHPEWV---TPESPSKRVGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFD 57

Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
            RI         + I +  E KIDG  ++++YE GK+   A RGDG
Sbjct: 58  RRIRDKVG----DDIAYMCELKIDGLAVSLQYENGKYKQGATRGDG 99


>gi|23011876|ref|ZP_00052108.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 114

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 72/111 (64%), Gaps = 1/111 (0%)

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++++F+  P N  AV ALL++V+ +      + ++    K +VFTGTL+K+ R +A+  
Sbjct: 4   DSLIQFFSEPHNDAAVRALLEQVN-TEPLASTHSAAAFAGKTVVFTGTLEKMTRSEAKAT 62

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +LGA VS  +S KTD+++ G   GSKL+ A++ GVK+++E+ +L +L +
Sbjct: 63  AERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAERHGVKVVSEDAWLEMLAE 113


>gi|322652149|gb|EFY48511.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
          Length = 100

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 56/98 (57%)

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
            I  + A        +  + + + S    K +V TG+L ++ R  A+  +  +GA V+  
Sbjct: 1   MIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAKARLVAVGAKVAGS 60

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 61  VSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 98


>gi|187776894|ref|ZP_02993367.1| hypothetical protein CLOSPO_00433 [Clostridium sporogenes ATCC
           15579]
 gi|187775553|gb|EDU39355.1| hypothetical protein CLOSPO_00433 [Clostridium sporogenes ATCC
           15579]
          Length = 242

 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 123/263 (46%), Gaps = 27/263 (10%)

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
            + ++K+ V     NI+ L  + ++  FK+      +    DIF L++ +         I
Sbjct: 6   FINKIKNMVGEKGLNIKKLNDETINILFKN----GFLNNVYDIFLLKKEELY------KI 55

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            GF    V  L  SI+K +N S E+FI++  I  V  + A ++A  +L++ +       +
Sbjct: 56  NGFTKEHVDELIKSIDKAKNCSFEKFIYASSIPKVKEKEAMAIAHTFLNFTDL------V 109

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  NN+D   L R+  + + + ++I       RN   +  L   V+P+    +   ++ I
Sbjct: 110 IDINNNDCDRLRRIDGISEELVESI------KRNRVFLVNLFMYVNPTSIDEK---NANI 160

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGV 706
           +  K   TG L K   +  +E + +   +V   +++  D ++ GD   + K+  A++   
Sbjct: 161 KRYKFCITGVLNKDT-NYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNT 219

Query: 707 KIMNEEQFLFLLQQYNTTLRIHD 729
           ++++E Q + +L++   + ++ +
Sbjct: 220 RLISERQLVDILKEIKESNKMKN 242


>gi|170760368|ref|YP_001788506.1| BRCT domain-containing protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407357|gb|ACA55768.1| BRCT domain protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 242

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 27/263 (10%)

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
            + R+K+ V     NI+ L  + ++  FK+      +    DIF L++ +         I
Sbjct: 6   FINRIKNMVGEKGINIKELNDKTINILFKN----GLLNNAYDIFLLKKEELY------KI 55

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            G     V  L  SINK +N S E+FI++  I  V  + A  +A  +L++ +       +
Sbjct: 56  DGLTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDL------V 109

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  NN+D   L R+  + + I ++I       RN   +  L   V+P     +   ++ I
Sbjct: 110 IDINNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEK---NANI 160

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGV 706
           +  K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   
Sbjct: 161 KRYKFCITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNT 219

Query: 707 KIMNEEQFLFLLQQYNTTLRIHD 729
           ++++E Q + +L++     ++ +
Sbjct: 220 RLISERQLVDILKEIKENNKMKN 242


>gi|237796641|ref|YP_002864193.1| BRCT domain protein [Clostridium botulinum Ba4 str. 657]
 gi|229263554|gb|ACQ54587.1| BRCT domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 242

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 27/263 (10%)

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
            + R+K+ V     NI+ L  + ++  FK+      +    DIF L++ +         I
Sbjct: 6   FINRIKNMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELY------KI 55

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            G     V  L  SINK +N S E+FI++  I  V  + A  +A  +L++ +       +
Sbjct: 56  DGLTKEYVDKLIKSINKTKNCSFEKFIYACSIPKVKEKEAIVIAHTFLNFTDL------V 109

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  NN+D   L R+  + + I ++I       RN   +  L   V+P     +   ++ I
Sbjct: 110 IDINNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEK---NANI 160

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGV 706
           +  K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   
Sbjct: 161 KRYKFCITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNT 219

Query: 707 KIMNEEQFLFLLQQYNTTLRIHD 729
           ++++E Q + +L++     ++ +
Sbjct: 220 RLISERQLVDILKEIKENNKMKN 242


>gi|168183502|ref|ZP_02618166.1| BRCT domain protein [Clostridium botulinum Bf]
 gi|182673380|gb|EDT85341.1| BRCT domain protein [Clostridium botulinum Bf]
          Length = 242

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 117/263 (44%), Gaps = 27/263 (10%)

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
            + R+K+ V     NI+ L  + ++  FK+      +    DIF L++ +         I
Sbjct: 6   FINRIKNMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELY------KI 55

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            G     V  L  SINK +N S E+FI++  I  V  + A  +A  + ++ +       +
Sbjct: 56  DGLTKEYVDKLIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFFNFTDL------V 109

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  NN+D   L R+  + + I ++I       RN   +  L   V+P     +   ++ I
Sbjct: 110 IDINNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEK---NANI 160

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGV 706
           +  K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   
Sbjct: 161 KRYKFCITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNT 219

Query: 707 KIMNEEQFLFLLQQYNTTLRIHD 729
           ++++E Q + +L++     ++ +
Sbjct: 220 RLISERQLVDILKEIKENNKMKN 242


>gi|32396678|gb|AAP49296.1| NAD-dependent DNA ligase [Meiothermus ruber]
          Length = 120

 Score =  128 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
            PRNAA+G LR+ +P     R L    +G+G+   +    Q E+L+K+  LGF V+   +
Sbjct: 1   KPRNAAAGSLRQKDPRISAKRGLRGLFYGVGRPESLGVGTQQELLEKLGQLGFSVDPHYQ 60

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
                 GI   Y  M + R +LP++ DG+  K++  SL  +LG  A++PR+ I++KF  +
Sbjct: 61  VVRGVEGIEQGYQAMLAARKSLPFEADGVTVKLNNLSLWSELGYTAKTPRFAIAYKFPAE 120


>gi|149928190|ref|ZP_01916435.1| DNA ligase [Limnobacter sp. MED105]
 gi|149823081|gb|EDM82321.1| DNA ligase [Limnobacter sp. MED105]
          Length = 93

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 45/86 (52%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
            P+      + S     K  V TGTL +  R +A   +   G  V+  +S+KTD ++ G+
Sbjct: 8   WPAEETQTTDESHPFFGKTFVLTGTLSQYSRDEAGALIVARGGKVTGSVSKKTDYLLAGE 67

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLL 718
             GSKLEKA  LGV +++E  F  +L
Sbjct: 68  AAGSKLEKATALGVAVLDESTFQGML 93


>gi|330903436|gb|EGH34008.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 130

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 610 QAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHK 665
           QA+ +F+ +  N     A+EA LK+        +K V    +  +  V TG+L+++ R  
Sbjct: 10  QAVCDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLERMSRDV 69

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L +    +
Sbjct: 70  AKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLTELGVAV 129


>gi|9964513|ref|NP_064981.1| putative NAD+ dependent DNA ligase [Amsacta moorei entomopoxvirus
           'L']
 gi|9944722|gb|AAG02905.1|AF250284_199 AMV199 [Amsacta moorei entomopoxvirus 'L']
          Length = 532

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 87/408 (21%), Positives = 142/408 (34%), Gaps = 76/408 (18%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
            + LE  I   D+ YY     +I D +YD L R  + I + +P+            KIG 
Sbjct: 25  YNDLENIIQTLDNSYYDKEA-LISDKKYD-LIR--NFINNKYPNE-------SLCKKIGY 73

Query: 81  EMNLSLFKVTHSIPTLSLEKIW-NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                  KV       S  K + +   L  +I          + ++    L  K DG  +
Sbjct: 74  TPED---KVRLKYFMGSENKTYKSDNKLLSWIN---------EYHTNILVLSAKADGISV 121

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE-----VRGEVYIS 194
               +  K      RGDG  G+D++  I          ++N  +I +     VRGE+ I 
Sbjct: 122 LWDIKNNKI---YSRGDGKYGKDITHFINYF-NFSDDKNINNNDIFKNNINFVRGELVID 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKG 253
           K +                   RN  +G + R     +    + F  + + +        
Sbjct: 178 KPE------------------NRNIVAGQINRNEIDKETALKIYFVAYEILE----PRMT 215

Query: 254 QYEMLQKMRCLGFPVNNG--VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           Q E   K+            V    ++  +   YN        L Y IDG++ + +  + 
Sbjct: 216 QLEQFHKLTENSIRTVKYDSVDYNISYEQLSEIYNNYTQ---ELSYYIDGIIIRNNNLNP 272

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             + G     P W I  K  +K   T + +I   I +  I  P A LEP+ I  + I   
Sbjct: 273 VIKSGN----PPWSICFKETDKIYITTVKEIKWDISKKNIYIPKAILEPIIIDNSTINAV 328

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
             HN  Y+             + I  G  V + + G VIP + ++I  
Sbjct: 329 ACHNAKYV-----------IDKKINTGSIVEIVKKGGVIPIINNVIKE 365


>gi|148381134|ref|YP_001255675.1| BRCT domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933573|ref|YP_001385509.1| BRCT domain-containing protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153936307|ref|YP_001388915.1| BRCT domain-containing protein [Clostridium botulinum A str. Hall]
 gi|148290618|emb|CAL84747.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929617|gb|ABS35117.1| BRCT domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932221|gb|ABS37720.1| BRCT domain protein [Clostridium botulinum A str. Hall]
          Length = 242

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 118/263 (44%), Gaps = 27/263 (10%)

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
            + R+K  V     NI+ L  + ++  FK+      +    DIF L++ +         I
Sbjct: 6   FINRIKSMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELY------KI 55

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            GF    V  L  SINK +N S E+FI++  I  V  + A  +A  +L++ +       +
Sbjct: 56  DGFTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDL------V 109

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  NN+D   L R+  + + I ++I       RN   +  L   V+P     +   ++ I
Sbjct: 110 IDINNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEK---NTNI 160

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGV 706
           +  K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   
Sbjct: 161 KRYKFSITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNT 219

Query: 707 KIMNEEQFLFLLQQYNTTLRIHD 729
           ++++E Q + +L++     +I +
Sbjct: 220 RLISERQLVDILKEIKENNKIKN 242


>gi|168179165|ref|ZP_02613829.1| BRCT domain protein [Clostridium botulinum NCTC 2916]
 gi|226950614|ref|YP_002805705.1| BRCT domain-containing protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670000|gb|EDT81976.1| BRCT domain protein [Clostridium botulinum NCTC 2916]
 gi|226842284|gb|ACO84950.1| BRCT domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 242

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 118/263 (44%), Gaps = 27/263 (10%)

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
            + R+K  V     NI+ L  + ++  FK+      +    DIF L++ +         I
Sbjct: 6   FINRIKIMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELY------KI 55

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            GF    V  L  SINK +N S E+FI++  I  V  + A  +A  +L++ +       +
Sbjct: 56  DGFTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDL------V 109

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  NN+D   L R+  + + I ++I       RN   +  L   V+P     +   ++ I
Sbjct: 110 IDINNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEK---NTNI 160

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGV 706
           +  K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   
Sbjct: 161 KRYKFAITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNT 219

Query: 707 KIMNEEQFLFLLQQYNTTLRIHD 729
           ++++E Q + +L++     ++ +
Sbjct: 220 RLISERQLVDILKEIKENNKMKN 242


>gi|153938097|ref|YP_001392537.1| BRCT domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|152933993|gb|ABS39491.1| BRCT domain protein [Clostridium botulinum F str. Langeland]
 gi|295320523|gb|ADG00901.1| BRCT domain protein [Clostridium botulinum F str. 230613]
          Length = 242

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 27/263 (10%)

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
            + R+K  V     NI+ L  + ++  FK+      +    DIF L++ +         I
Sbjct: 6   FINRIKSMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELY------KI 55

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            GF    V  L  SINK +N S E+FI++  I  V  + A  +A  +L+  +       +
Sbjct: 56  DGFTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNLTDL------V 109

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  NN+D   L R+  + + I ++I       RN   +  L   V+P     +   ++ I
Sbjct: 110 IDINNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEK---NANI 160

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGV 706
           +  K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   
Sbjct: 161 KRYKFSITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNT 219

Query: 707 KIMNEEQFLFLLQQYNTTLRIHD 729
           ++++E Q + +L++     ++ +
Sbjct: 220 RLISERQLVDILKEIKENNKMKN 242


>gi|170755519|ref|YP_001782825.1| BRCT domain-containing protein [Clostridium botulinum B1 str. Okra]
 gi|169120731|gb|ACA44567.1| BRCT domain protein [Clostridium botulinum B1 str. Okra]
          Length = 242

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 119/263 (45%), Gaps = 27/263 (10%)

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
            + R+K+ V     NI+ L  + ++  F++      +    DIF L++ +         I
Sbjct: 6   FINRIKNMVGEKGINIKELNDETINILFEN----GFLNNAYDIFLLKKEELY------KI 55

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            GF    V  L  SINK +N + E+FI++  I  V  + A  +A  +L++ +       +
Sbjct: 56  DGFTKEYVDELIKSINKTKNCNFEKFIYACSIPKVTEKEAIVIAHTFLNFTDL------V 109

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  NN+D   L R+  + + I ++I       RN   +  L   V+P     +   ++ I
Sbjct: 110 IDINNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEK---NANI 160

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGV 706
           +  K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   
Sbjct: 161 KRYKFSITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNT 219

Query: 707 KIMNEEQFLFLLQQYNTTLRIHD 729
           ++++E Q + +L++     ++ +
Sbjct: 220 RLISERQLVDILKEIKENNKMKN 242


>gi|32396677|gb|AAP49295.1| NAD-dependent DNA ligase [Meiothermus ruber]
          Length = 99

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWN 103
           D+EYD L +   A+  A P+L     P+ P   +G  +  +    V H     SL   ++
Sbjct: 1   DAEYDRLLQELRALEEAHPELII---PDSPTQTVGSAILETPFTPVPHPTRMYSLGNAFS 57

Query: 104 IEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            +D+  F   I RF  +++     + LE KIDG  + + YE+G 
Sbjct: 58  QDDIADFEASINRFLGREESRE--YVLEYKIDGLSVNLIYEEGV 99


>gi|213427119|ref|ZP_03359869.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 93

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 56/93 (60%)

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
                A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   ++P+W +++K
Sbjct: 1   PKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYK 60

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           F  K+   +LL +D  +GRTG++TP A L PV 
Sbjct: 61  FPVKEKEAQLLSVDWTVGRTGVVTPTANLTPVQ 93


>gi|213620585|ref|ZP_03373368.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 82

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 50/79 (63%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
           +  + + + S    K +V TG+L ++ R  A+  +  LGA V+  +S+KTD++I G+  G
Sbjct: 4   VVINAQEIDSPFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAG 63

Query: 696 SKLEKAQQLGVKIMNEEQF 714
           SKL KAQ+LG+ +++E + 
Sbjct: 64  SKLAKAQELGITVIDEAEM 82


>gi|207110372|ref|ZP_03244534.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 108

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 11/119 (9%)

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
              R      +DG+V  V+E  +QK+LG   +SP++  ++KF   +  T+++ +  Q+GR
Sbjct: 1   MREREGFFALLDGMVIVVNELGIQKELGYTQKSPKFACAYKFPALEKHTKIIGVINQVGR 60

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           +G +TPVA LEP+ I GA++T ATLHN   I+            ++I + DRV+V R+G
Sbjct: 61  SGAITPVALLEPIEIAGAMVTKATLHNYSEIEK-----------KNIMLNDRVVVIRSG 108


>gi|309805852|ref|ZP_07699887.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167761|gb|EFO69905.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus
           iners LactinV 03V1-b]
          Length = 109

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
            DP+    ++GG     L KV H  P LS+  ++
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVF 91


>gi|309784373|ref|ZP_07679012.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           dysenteriae 1617]
 gi|308927880|gb|EFP73348.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           dysenteriae 1617]
          Length = 153

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 31/184 (16%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F    R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFGSEPR-DVMMPPLN----------GAVMHPVAHTGVRKMV 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S  +     ++GE+++ +   +          +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ--------QMGGINARAKVAG 149

Query: 223 ILRR 226
           ++ R
Sbjct: 150 LMMR 153


>gi|289679599|ref|ZP_06500489.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           FF5]
          Length = 109

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 17/119 (14%)

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           + NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+ 
Sbjct: 1   VANATLHNMDEVARLG-----------LMIGDTVIIRRAGDVIPQVVQVVAERRPENARA 49

Query: 428 FSFPSFCPICQSRVVRDL------NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
              P  CP+C S V R          +T    A +RC G LAC AQ  + + H+VSR A
Sbjct: 50  VQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRA 108


>gi|330883607|gb|EGH17756.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 94

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 47/88 (53%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
             +      +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSK
Sbjct: 6   EKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSK 65

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           L KA +LG+ +++E+  L  L +    +
Sbjct: 66  LTKANELGLTVLDEDALLKRLTELGVAV 93


>gi|153829889|ref|ZP_01982556.1| DNA ligase [Vibrio cholerae 623-39]
 gi|148874632|gb|EDL72767.1| DNA ligase [Vibrio cholerae 623-39]
          Length = 103

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 2/101 (1%)

Query: 621 NICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           N   +  LL++    P++      V S +  K +V TG+  ++ R+ A+  +  LGA V+
Sbjct: 3   NQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQALGAKVT 62

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 63  GSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 103


>gi|213027451|ref|ZP_03341898.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 79

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
          +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1  MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74 PLNKIGGEMNLSLFKVTHSIPT 95
          P  ++G     +  ++ H +P 
Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPM 79


>gi|320179985|gb|EFW54927.1| DNA ligase , LigB [Shigella boydii ATCC 9905]
          Length = 140

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 23/158 (14%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F +  R +    PLN            V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCFGNETR-DVMMPPLN----------GAVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMREHSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
            +  +R I  +P+ +S  +     ++GE+++ +   + 
Sbjct: 99  WTQKVRLISAVPQTVSGPLANST-LQGEIFLKREGHIQ 135


>gi|90019261|gb|ABD84282.1| NAD-dependent DNA ligase-like [Yersinia sp. MH-1]
          Length = 167

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 34/193 (17%)

Query: 41  PIILDSEYDALKRRCDAIAHAF--PD--LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTL 96
            +I D  YD L+ R +        P+  +  +  P   L            +++H +   
Sbjct: 5   SLIEDDIYDQLRYRLNHWVRCIAIPEKRVNNALSPTISLQ----------NRLSHPVAHT 54

Query: 97  SLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGD 156
            L+K+     L +++      W           ++PK+DG  +T+ Y +G    A  RGD
Sbjct: 55  GLKKLHGKGALSEWLAERKNLW-----------VQPKVDGVAVTLTYVQGNLTQAISRGD 103

Query: 157 GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216
           G  G++ +  ++ IP IP  +S   P ++ + GE+++                     N 
Sbjct: 104 GAVGQNWTDKVKYIPAIPHFISQAPP-LLVLHGELFLKVTHH--------KQKEAGGINA 154

Query: 217 RNAASGILRRLNP 229
           R   +G + + +P
Sbjct: 155 RALVAGAMMKKSP 167


>gi|156359338|ref|XP_001624727.1| predicted protein [Nematostella vectensis]
 gi|156211524|gb|EDO32627.1| predicted protein [Nematostella vectensis]
          Length = 793

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +   +  E    V TG L  I+R  AQ+ + + G  V+  +S+KT  ++VG + G 
Sbjct: 45  KEIPQGAENCFEGLTFVVTGVLDSIERDHAQDLIQRYGGKVTGSVSKKTSYLLVGRDAGA 104

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           SKL KAQ LG K ++E+ FL L++        H+
Sbjct: 105 SKLSKAQTLGTKQLDEDAFLDLIRNTPGKKSKHE 138


>gi|33861216|ref|NP_892777.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33639948|emb|CAE19118.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 249

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 117/308 (37%), Gaps = 66/308 (21%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ + ++D  Y +    +I D ++D L++    I                      + +
Sbjct: 5   LEERLEWYDHNY-RIGNSLITDKQFDQLEKNLLRI----------------------DPD 41

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
              F    S+P  SL+K      + +F+  +               +EPKIDG  I ++Y
Sbjct: 42  CDYFTNKKSLPLPSLKK----NSIDEFLEGLL--------PDTRLLIEPKIDGIAIALQY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G    +  R     G DV+  I  I  IP  L L +  I+++RGE++           
Sbjct: 90  RDGTLEKSISR----KGIDVTNKIAEIQDIP--LKLPVSGILQIRGELFTPN-------- 135

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                  +     +  ASG +R    +     ++F    +          QYE +Q ++ 
Sbjct: 136 -------RSPNFSQRIASGFVRAAAGSPEG--ISFCGFQIINGKL----NQYETIQYLKK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR--S 321
           LGF     ++  N    +  +  +    +    Y  DG+V K++   LQ  + E+++   
Sbjct: 183 LGFNT-PDIKSCNYTSQVQVFRKQWLDKKIFTEYPTDGIVVKINSRKLQ-LIREKSKIDY 240

Query: 322 PRWMISHK 329
           P W I+ K
Sbjct: 241 PHWQIAIK 248


>gi|326919292|ref|XP_003205915.1| PREDICTED: replication factor C subunit 1-like [Meleagris
           gallopavo]
          Length = 1212

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 590 HNNDDWLSLIRVPLVGDIIAQAI--VEFYQNPRNICAVEALLKEVSPSI---GRHEKNVS 644
               +     +   +    A++I   +  +   N  A  + L    P         +   
Sbjct: 407 AMGKEEKRTPKKEKISPKKAESISPEDSEKRRSNYQAYRSFLNREGPKALGSKEIPQGAE 466

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
           + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK EKA  
Sbjct: 467 NCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASA 526

Query: 704 LGVKIMNEEQFLFLLQ 719
           LG KI++E+    L++
Sbjct: 527 LGTKIIDEDGLFDLVR 542


>gi|37926542|pdb|1L7B|A Chain A, Solution Nmr Structure Of Brct Domain Of T. Thermophilus:
           Northeast Structural Genomics Consortium Target Wr64tt
          Length = 92

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
           +     ++    V TG L +  R + +  + +LGA V+  +SRKT  ++VG+NPGSKLEK
Sbjct: 2   EKGGEALKGLTFVITGELSRP-REEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEK 60

Query: 701 AQQLGVKIMNEEQFLFLLQ 719
           A+ LGV  + EE+   LL+
Sbjct: 61  ARALGVPTLTEEELYRLLE 79


>gi|126331819|ref|XP_001374096.1| PREDICTED: similar to Replication factor C (activator 1) 1, 145kDa
           [Monodelphis domestica]
          Length = 1347

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT  +++G + G 
Sbjct: 528 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQ 587

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 588 SKSDKALALGTKIIDEDGLLDLIR 611


>gi|148705786|gb|EDL37733.1| replication factor C 1, isoform CRA_b [Mus musculus]
          Length = 1157

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 420 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 479

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 480 SKSDKAAALGTKILDEDGLLDLIR 503


>gi|460932|gb|AAC52140.1| ISRE-binding protein [Mus musculus]
          Length = 1145

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 408 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 467

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 468 SKSDKAAALGTKILDEDGLLDLIR 491


>gi|148705785|gb|EDL37732.1| replication factor C 1, isoform CRA_a [Mus musculus]
          Length = 1160

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 424 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 483

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 484 SKSDKAAALGTKILDEDGLLDLIR 507


>gi|302564339|ref|NP_001082960.2| replication factor C subunit 1 [Danio rerio]
          Length = 1147

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 89/218 (40%), Gaps = 20/218 (9%)

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            ++  + +  ++RRQ+    + +   G   + ++         +   +     +   R  
Sbjct: 278 PVKTSSKLAQMKRRQEERDEQGKKDKGEKQIKISP--------KKEPIS---PTSSERAA 326

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
             + A + A    S      +  ++ +  +           +    A +    Y++  N 
Sbjct: 327 TPKTASASAGMAKSRNLSTPKSESVPSKTSPTKPENTSPDDLEKKRANSSA--YRSYLNR 384

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
               AL  +  P    +       +E    V TG L+ ++R +A+  + + G  V+  +S
Sbjct: 385 EGPRALGSKDIPQGEENC------LEGCVFVLTGVLESMERDEAKSLIERYGGKVTGNVS 438

Query: 683 RKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           RKT  +++G + G SK EKA+  G KI+NE++ L L++
Sbjct: 439 RKTTYLVLGRDSGVSKTEKAESFGTKIINEDELLDLIR 476


>gi|188219597|ref|NP_035388.2| replication factor C subunit 1 [Mus musculus]
 gi|148705787|gb|EDL37734.1| replication factor C 1, isoform CRA_c [Mus musculus]
          Length = 1131

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLIR 477


>gi|405112|gb|AAA21643.1| activator 1 large subunit [Mus musculus]
          Length = 1131

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLIR 477


>gi|54887426|gb|AAH85173.1| Rfc1 protein [Mus musculus]
          Length = 1132

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLIR 477


>gi|1022776|gb|AAA79698.1| differentiation specific element binding protein [Mus musculus]
          Length = 1130

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLIR 477


>gi|1703056|sp|P35601|RFC1_MOUSE RecName: Full=Replication factor C subunit 1; AltName:
           Full=A1-P145; AltName: Full=Activator 1 140 kDa subunit;
           Short=A1 140 kDa subunit; AltName: Full=Activator 1
           large subunit; AltName: Full=Activator 1 subunit 1;
           AltName: Full=Differentiation-specific element-binding
           protein; AltName: Full=ISRE-binding protein; AltName:
           Full=Replication factor C 140 kDa subunit; Short=RF-C
           140 kDa subunit; Short=RFC140; AltName: Full=Replication
           factor C large subunit
 gi|457742|emb|CAA51260.1| replication factor C [Mus musculus]
          Length = 1131

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLIR 477


>gi|1399917|gb|AAC60361.1| replication factor C large subunit [Anas platyrhynchos]
          Length = 1145

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 6/122 (4%)

Query: 604 VGDIIAQAIV--EFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTL 658
           +    A++++  +  +   N  A  + L    P         +   + +E    V TG L
Sbjct: 354 ISPKKAESVIPEDSEKKRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVL 413

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
           + I+R +A+  + + G  V+  +S+KT+ +++G + G SK EKA  LG KI++E+    L
Sbjct: 414 ESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASALGTKIIDEDGLFDL 473

Query: 718 LQ 719
           ++
Sbjct: 474 VR 475


>gi|159164362|pdb|2EBU|A Chain A, Solution Structure Of The Brct Domain From Human
           Replication Factor C Large Subunit 1
          Length = 112

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 13  KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 72

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 73  SKSDKAAALGTKIIDEDGLLNLIR 96


>gi|149035369|gb|EDL90073.1| replication factor C 1 [Rattus norvegicus]
          Length = 1131

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT  +++G + G 
Sbjct: 393 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQ 452

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 453 SKSDKAAALGTKILDEDGLLDLIR 476


>gi|296237052|ref|XP_002763589.1| PREDICTED: replication factor C subunit 1, partial [Callithrix
           jacchus]
          Length = 827

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 402 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 461

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 462 SKSDKAAALGTKIIDEDGLLNLIR 485


>gi|189339249|ref|NP_445999.1| replication factor C (activator 1) 1 [Rattus norvegicus]
          Length = 1131

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT  +++G + G 
Sbjct: 392 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQ 451

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 452 SKSDKAAALGTKILDEDGLLDLIR 475


>gi|57530056|ref|NP_001006456.1| replication factor C subunit 1 [Gallus gallus]
 gi|53130644|emb|CAG31651.1| hypothetical protein RCJMB04_9c6 [Gallus gallus]
          Length = 1147

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 590 HNNDDWLSLIRVPLVGDIIAQAI--VEFYQNPRNICAVEALLKEVSPSI---GRHEKNVS 644
               +     +   +    A++I   +  +   N  A  + L    P         +   
Sbjct: 342 AMGKEEKRTPKKEKISPKKAESISPEDSEKGRNNYQAYRSFLNREGPKALGSKEIPQGAE 401

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
           + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK EKA  
Sbjct: 402 NCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKAST 461

Query: 704 LGVKIMNEEQFLFLLQ 719
           LG KI++E+    L++
Sbjct: 462 LGTKIIDEDGLFDLVR 477


>gi|260827655|ref|XP_002608780.1| hypothetical protein BRAFLDRAFT_183645 [Branchiostoma floridae]
 gi|229294132|gb|EEN64790.1| hypothetical protein BRAFLDRAFT_183645 [Branchiostoma floridae]
          Length = 756

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +   + +     V TG L+ ++RH+A+E V + G  V++ +S++T  ++VG + G 
Sbjct: 54  KEIPQGQENCLGGLTFVLTGILESMERHEAKELVERYGGKVTSSVSKRTSYVVVGRDAGE 113

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKL+K  QLG+K ++E+  L L++
Sbjct: 114 SKLDKVSQLGLKTLDEDGLLELVK 137


>gi|47210904|emb|CAF94208.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 775

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                  +   + +E    V TG L+ ++R + +  + + G  V+  +S+KT  ++ G +
Sbjct: 6   WGSKEIPQGAENCLEGCVFVLTGVLESMERDETKSLIERYGGKVTGNISKKTTYLVQGRD 65

Query: 694 PG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G SKLEKA+ LG KI++E+  L L++
Sbjct: 66  CGVSKLEKAESLGTKILDEDGLLELIR 92


>gi|1488250|gb|AAB12366.1| DNA ligase [Dichelobacter nodosus]
          Length = 139

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

Query: 608 IAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +A  I  F+ +  N   + A++   V  S    +K + + +  K +V TGTL  + R +A
Sbjct: 1   VAADIEHFFADEDNRAVIAAIVPAGVHWSTELPKKIIDAPLLGKTVVITGTLPSLSRAEA 60

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           Q+ +  LGA V++ +SR+TD +++G + GSKL +AQ   V+++
Sbjct: 61  QKRLETLGAKVTSQVSRQTDFLLLGADAGSKLARAQAFSVRLL 103


>gi|257471690|pdb|2K7F|A Chain A, Haddock Calculated Model Of The Complex Between The Brct
           Region Of Rfc P140 And Dsdna
 gi|259090084|pdb|2K6G|A Chain A, Solution Structure Of The Dna Binding Brct Domain From The
           Large Subunit Of Human Replication Factor C
          Length = 109

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 23  KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 82

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 83  SKSDKAAALGTKIIDEDGLLNLIR 106


>gi|281342306|gb|EFB17890.1| hypothetical protein PANDA_014667 [Ailuropoda melanoleuca]
          Length = 1119

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 395 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 454

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG  I++E+  L L++
Sbjct: 455 SKSDKAAALGTNIIDEDGLLNLIR 478


>gi|73951876|ref|XP_536259.2| PREDICTED: similar to replication factor C large subunit [Canis
           familiaris]
          Length = 1145

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG  I++E+  L L++
Sbjct: 454 SKSDKAAALGTNIIDEDGLLNLIR 477


>gi|123966480|ref|YP_001011561.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200846|gb|ABM72454.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9515]
          Length = 251

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 114/311 (36%), Gaps = 68/311 (21%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++D  Y +   P+I D ++D L+                        ++  + N
Sbjct: 5   LEERIEWYDHNY-RMGTPLISDVQFDQLEANLY--------------------RVNPKAN 43

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               K    +P  SL K    + + +F+  +          +    +EPKIDG  I I+Y
Sbjct: 44  YFHKKSILPLP--SLPK----DKISEFLEGLL--------PNTRLIIEPKIDGCAIGIQY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G+ + A  R     G+DV+  I+ I  +P  +   +  +I+VRGE++         N+
Sbjct: 90  IDGQLIKAISR----KGDDVTNKIKEILDVPNEIK--VKGLIQVRGELFAPLE-----NE 138

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                        +  A G LR  N      +L+F    +              L  ++ 
Sbjct: 139 R--------PTYSQRKAGGYLR--NEASKNDHLSFCGFQIINGRLNEHDS----LVYLKK 184

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ----KQLGERA 319
           LGF      +       +  Y  +    +    Y  DG+V K++   LQ    K +G   
Sbjct: 185 LGF-TIPEYKSLKYLTQVEMYRKQWAEKKLFTQYPTDGIVVKLNSRKLQLIREKSVGC-- 241

Query: 320 RSPRWMISHKF 330
             P W ++  F
Sbjct: 242 -YPYWQMAINF 251


>gi|311262015|ref|XP_003128976.1| PREDICTED: replication factor C subunit 1-like [Sus scrofa]
          Length = 1039

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 320 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 379

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK  KA  LG KI++E+  L L++
Sbjct: 380 SKSGKAAALGTKIIDEDGLLNLIR 403


>gi|302694127|ref|XP_003036742.1| hypothetical protein SCHCODRAFT_46550 [Schizophyllum commune H4-8]
 gi|300110439|gb|EFJ01840.1| hypothetical protein SCHCODRAFT_46550 [Schizophyllum commune H4-8]
          Length = 862

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P          + +     VFTG L    R +A E   + G  V+   S KTD +++GD
Sbjct: 184 APGSKEVPDGAPNALAGLAFVFTGELSAFSRDEAVELAKRFGGRVTGQPSGKTDYVVLGD 243

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           N G SKL   ++ G+K +NE++FL L+   N   ++  D+
Sbjct: 244 NAGDSKLRAIKKHGLKTLNEDEFLALVGSRNKDGKMKVDE 283


>gi|301779603|ref|XP_002925218.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1-like
           [Ailuropoda melanoleuca]
          Length = 1146

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 396 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 455

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG  I++E+  L L++
Sbjct: 456 SKSDKAAALGTNIIDEDGLLNLIR 479


>gi|119613328|gb|EAW92922.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_a [Homo
           sapiens]
          Length = 1032

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 281 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 340

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 341 SKSDKAAALGTKIIDEDGLLNLIR 364


>gi|194209224|ref|XP_001495351.2| PREDICTED: replication factor C (activator 1) 1, 145kDa [Equus
           caballus]
          Length = 1176

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 425 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 484

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 485 SKSDKAAALGTKIIDEDGLLNLIR 508


>gi|118118702|ref|XP_001236329.1| PREDICTED: hypothetical protein, partial [Gallus gallus]
          Length = 255

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 590 HNNDDWLSLIRVPLVGDIIAQAI--VEFYQNPRNICAVEALLKEVSPSI---GRHEKNVS 644
               +     +   +    A++I   +  +   N  A  + L    P         +   
Sbjct: 104 AMGKEEKRTPKKEKISPKKAESISPEDSEKRRNNYQAYRSFLNREGPKALGSKEIPQGAE 163

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
           + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK EKA  
Sbjct: 164 NCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKAST 223

Query: 704 LGVKIMNEEQFLFLLQ 719
           LG KI++E+    L++
Sbjct: 224 LGTKIIDEDGLFDLVR 239


>gi|114593614|ref|XP_001140603.1| PREDICTED: replication factor C large subunit isoform 2 [Pan
           troglodytes]
          Length = 1031

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 281 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 340

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 341 SKSDKAAALGTKIIDEDGLLNLIR 364


>gi|74222286|dbj|BAE26945.1| unnamed protein product [Mus musculus]
 gi|74226849|dbj|BAE27069.1| unnamed protein product [Mus musculus]
          Length = 584

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGHDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLIR 477


>gi|224050004|ref|XP_002189560.1| PREDICTED: replication factor C (activator 1) 1, 145kDa
           [Taeniopygia guttata]
          Length = 1142

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 387 KEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQ 446

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK EKA  LG KI++E+    L++
Sbjct: 447 SKCEKASTLGTKIIDEDGLFDLIR 470


>gi|114593610|ref|XP_001140519.1| PREDICTED: replication factor C large subunit isoform 1 [Pan
           troglodytes]
          Length = 1119

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 369 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 428

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 429 SKSDKAAALGTKIIDEDGLLNLIR 452


>gi|1066815|gb|AAA81558.1| nonamer binding protein [Mus musculus]
          Length = 428

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 336 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 395

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 396 SKSDKAAALGTKILDEDGLLDLIR 419


>gi|114593616|ref|XP_517154.2| PREDICTED: replication factor C large subunit isoform 5 [Pan
           troglodytes]
          Length = 1123

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLIR 480


>gi|555972|gb|AAB60452.1| replication factor C large subunit [Mus musculus]
          Length = 565

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLIR 477


>gi|327273243|ref|XP_003221390.1| PREDICTED: replication factor C subunit 1-like [Anolis
           carolinensis]
          Length = 1124

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKL 698
            +   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ ++ G + G SK 
Sbjct: 382 PQGAENCLEGMTFVITGVLESIERDEAKSLIERYGGKVTGNISKKTNFLVKGRDCGLSKC 441

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
           EKA  LG KI++E+    L+Q+
Sbjct: 442 EKASALGTKIIDEDGLFDLIQK 463


>gi|332218978|ref|XP_003258636.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1-like
           [Nomascus leucogenys]
          Length = 1148

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLIR 480


>gi|410218|gb|AAA16121.1| replication factor C large subunit [Homo sapiens]
          Length = 1148

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLIR 480


>gi|296908|emb|CAA80355.1| PO-GA [Homo sapiens]
 gi|2827257|gb|AAB99788.1| DNA binding protein [Homo sapiens]
          Length = 1147

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLIR 480


>gi|32528306|ref|NP_002904.3| replication factor C subunit 1 isoform 1 [Homo sapiens]
 gi|30354564|gb|AAH51751.1| Replication factor C (activator 1) 1, 145kDa [Homo sapiens]
 gi|46430941|gb|AAS94325.1| replication factor C (activator 1) 1, 145kDa [Homo sapiens]
 gi|119613330|gb|EAW92924.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_c [Homo
           sapiens]
 gi|168275744|dbj|BAG10592.1| replication factor C subunit 1 [synthetic construct]
          Length = 1147

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLIR 480


>gi|3342382|gb|AAC40192.1| VIP-receptor-gene repressor protein [Rattus norvegicus]
          Length = 656

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT  +++G + G 
Sbjct: 392 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQ 451

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 452 SKSDKAAALGTKILDEDGLLDLIR 475


>gi|325296984|ref|NP_001191676.1| replication factor C subunit 1 isoform 2 [Homo sapiens]
 gi|56757608|sp|P35251|RFC1_HUMAN RecName: Full=Replication factor C subunit 1; AltName:
           Full=Activator 1 140 kDa subunit; Short=A1 140 kDa
           subunit; AltName: Full=Activator 1 large subunit;
           AltName: Full=Activator 1 subunit 1; AltName:
           Full=DNA-binding protein PO-GA; AltName:
           Full=Replication factor C 140 kDa subunit; Short=RF-C
           140 kDa subunit; Short=RFC140; AltName: Full=Replication
           factor C large subunit
 gi|52632416|gb|AAH35297.1| Replication factor C (activator 1) 1, 145kDa [Homo sapiens]
 gi|119613329|gb|EAW92923.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_b [Homo
           sapiens]
 gi|158256656|dbj|BAF84301.1| unnamed protein product [Homo sapiens]
          Length = 1148

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLIR 480


>gi|30353858|gb|AAH51786.1| RFC1 protein [Homo sapiens]
 gi|167774195|gb|ABZ92532.1| replication factor C (activator 1) 1, 145kDa [synthetic construct]
          Length = 1148

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLIR 480


>gi|114593608|ref|XP_001140765.1| PREDICTED: replication factor C subunit 1 isoform 4 [Pan
           troglodytes]
          Length = 1148

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLIR 480


>gi|109074009|ref|XP_001091287.1| PREDICTED: replication factor C subunit 1 isoform 3 [Macaca
           mulatta]
          Length = 1148

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLIR 480


>gi|114593612|ref|XP_001140686.1| PREDICTED: replication factor C large subunit isoform 3 [Pan
           troglodytes]
          Length = 978

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLIR 480


>gi|149640658|ref|XP_001512744.1| PREDICTED: similar to Replication factor C (activator 1) 1, 145kDa
           [Ornithorhynchus anatinus]
          Length = 1233

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +   + +E    V TG L+ I+R +A+  + + G  V+  +S++T  +++G + G 
Sbjct: 480 KEIPQGAENCLEGLTFVITGVLESIERDEAKCLIERHGGKVTGNVSKRTSYLVMGRDSGQ 539

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 540 SKSDKASALGTKIIDEDGLLNLIR 563


>gi|291385663|ref|XP_002709319.1| PREDICTED: germ line transcription factor 1-like [Oryctolagus
           cuniculus]
          Length = 1152

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 420 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 479

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG  I++E+  L L++
Sbjct: 480 SKSDKAAALGTNIIDEDGLLNLIR 503


>gi|328790808|ref|XP_397246.4| PREDICTED: replication factor C subunit 1 [Apis mellifera]
          Length = 1009

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
              DI  + I +  Q+              +P   +        +     V TG L  ++
Sbjct: 240 DTSDIYEEIIAKKKQSVTMYQQYLQRGGARNPGSKKIPVGAEYCLAGLSFVITGVLDSLE 299

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721
           R +A+E V Q G  +   +++KTD IIVGD  G SKL KA  L +K ++E+  L L+Q+ 
Sbjct: 300 REEAEELVKQYGGRILHQVTKKTDYIIVGDQAGPSKLSKADSLNIKKISEDDLLDLIQEE 359

Query: 722 NTTLRIH 728
           + + +I 
Sbjct: 360 SPSKKIK 366


>gi|313760612|ref|NP_001186496.1| replication factor C (activator 1) 1, 145kDa [Xenopus (Silurana)
           tropicalis]
          Length = 1144

 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
                   + +E    V TG L+ I+R +A+  V + G  V+  +S+KT+ II+G + G 
Sbjct: 386 KEIPIGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGV 445

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK EKA+  G KI++E+  L L++
Sbjct: 446 SKQEKAEAFGTKILDEDGLLNLIR 469


>gi|168050549|ref|XP_001777721.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670941|gb|EDQ57501.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 850

 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN- 693
                 +     + N   V +GTL  ++R +A+  +   G  V+  +S+KTD ++  ++ 
Sbjct: 140 GEKEVPQGADDALANLTFVISGTLDSLEREEAEHLIKSHGGRVTGSVSKKTDYLLADEDI 199

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            G K +KA++LGVK + E+    ++++
Sbjct: 200 GGRKSQKAKELGVKFITEDGLFEMIRK 226


>gi|321264327|ref|XP_003196881.1| DNA replication activator 1 subunit1 (Replication factor C subunit
           1) [Cryptococcus gattii WM276]
 gi|317463358|gb|ADV25094.1| DNA replication activator 1 subunit1 (Replication factor C subunit
           1), putative [Cryptococcus gattii WM276]
          Length = 991

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P      +     +     VFTG ++ + R  AQE V +    V+   S KT  ++VG+
Sbjct: 252 APGSKEIPEGAPDCLAGLTFVFTGEMESLGREDAQELVRRYSGKVTTAPSGKTSYVVVGE 311

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           N G SKL K ++  + +++E++FL L++Q +
Sbjct: 312 NAGVSKLNKVKEKKIPMIDEDEFLELIRQRS 342


>gi|1335208|emb|CAA49475.1| LLDBP [Homo sapiens]
          Length = 521

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 286 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 345

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 346 SKSDKAAALGTKIIDEDGLLNLIR 369


>gi|166366736|ref|YP_001659009.1| hypothetical protein MAE_39950 [Microcystis aeruginosa NIES-843]
 gi|166089109|dbj|BAG03817.1| unknown protein [Microcystis aeruginosa NIES-843]
          Length = 654

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 99/218 (45%), Gaps = 17/218 (7%)

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA--EIARSLA 571
           + + +T+T++    L   +  +T   ++       ++ + +    I+  G      + +A
Sbjct: 441 KDQLETTTSRHIEELSQQNRQLTQDLEA-----QKTVAKALDKEKIKFEGELATKQKEIA 495

Query: 572 KYYLSYQNFAQEINN-------IIAHNNDDWLSLIRV---PLVGDIIAQAIVEFYQNPRN 621
              +  QN  QE ++       II +  +  +S   V   P    +IA+           
Sbjct: 496 ALVVKIQNLQQERDDFSRQTAPIITNEPEAIISETPVVEEPETTPVIAEETPVVAAEKIL 555

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           +      ++  +  +   +++  + +  K +V  GT  KI R KA+  +  +G  V++  
Sbjct: 556 VADTSLEVQPAAEIVQTSQESAENTLRGKSVVILGTFSKISREKAKSLIINVGGTVTSSP 615

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S  TD I++G  PG KL+KAQ+LG+K ++E QFL +++
Sbjct: 616 SANTDYILLGKAPGEKLKKAQKLGIKTLSEAQFLQMVE 653


>gi|157117839|ref|XP_001653061.1| replication factor C large subunit, putative [Aedes aegypti]
 gi|108883325|gb|EAT47550.1| replication factor C large subunit, putative [Aedes aegypti]
          Length = 1047

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
             +P      K     +   + V TG L+ ++R +  + +   G  V   +S+K   ++V
Sbjct: 265 PANPGSKEIPKGKPDCLAGLQFVVTGVLESMERDECAQVIKDFGGKVVGSVSKKLTHMVV 324

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           G++ G SKL KA +LG+  ++E+  L L+++ +
Sbjct: 325 GEDAGPSKLAKADELGIPQISEDDLLDLIREKS 357


>gi|141795347|gb|AAI39656.1| Zgc:162875 protein [Danio rerio]
          Length = 529

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 87/219 (39%), Gaps = 22/219 (10%)

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR-RNISLERFIFSLGIRH 561
            ++  + +  ++RRQ+    + +            +   I    +   +     +   R 
Sbjct: 278 PVKTSSKLAQMKRRQEERDEQGKK---------DKVEKQIKISPKKEPIS---PTSSERA 325

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
              + A + A    S      +  ++ +  +           +    A +    Y++  N
Sbjct: 326 ATPKTASASAGMAKSRNLSTPKSESVPSKTSPTKPENTSPDDLEKKRANSSA--YRSYLN 383

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
                AL  +  P    +       +E    V TG L+ ++R +A+  + + G  V+  +
Sbjct: 384 REGPRALGSKDIPQGEENC------LEGCVFVLTGVLESMERDEAKSLIERYGGKVTGNV 437

Query: 682 SRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SRKT  +++G + G SK EKA+  G KI+NE++ L L++
Sbjct: 438 SRKTTYLVLGRDSGVSKTEKAESFGTKIINEDELLDLIR 476


>gi|58260802|ref|XP_567811.1| purine nucleotide binding protein [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134117247|ref|XP_772850.1| hypothetical protein CNBK2210 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255468|gb|EAL18203.1| hypothetical protein CNBK2210 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229892|gb|AAW46294.1| purine nucleotide binding protein, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 1001

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P      +     +     VFTG ++ + R  AQE V +    V+   S KT  ++VG+
Sbjct: 260 APGSKEIPEGAPDCLAGLTFVFTGEMESLGREDAQELVRRYSGKVTTAPSGKTSYVVVGE 319

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           N G SKL K ++  + ++NE++FL L++Q ++
Sbjct: 320 NAGVSKLNKVKEKKIPMINEDEFLELIRQRSS 351


>gi|149925065|ref|ZP_01913379.1| NAD-dependent DNA ligase LigA [Plesiocystis pacifica SIR-1]
 gi|149814058|gb|EDM73688.1| NAD-dependent DNA ligase LigA [Plesiocystis pacifica SIR-1]
          Length = 669

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 47/75 (62%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TG L KI+R +A+  +  LGA VS  +S+ TD++ VG+ PGSKL KA +LG+ +
Sbjct: 249 GKTVVVTGKLAKIKRAEAEARLNALGAKVSGSVSKSTDLLFVGEKPGSKLAKANKLGIPV 308

Query: 709 MNEEQFLFLLQQYNT 723
            +E   + L+   + 
Sbjct: 309 HDEAALMQLVANVDA 323



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 52/101 (51%)

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
                    K    +  + E    + ++ KK+  TG L  + R +A+ ++   GA  ++ 
Sbjct: 315 MQLVANVDAKPTVKAAPKVETKAVAALKGKKIAVTGKLSLMTRAEAKAHILAAGAKPTSS 374

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +S  TD++I+G + GSK   A QLGV+ +NE+QFL ++   
Sbjct: 375 VSGATDLLILGKDAGSKQRLAIQLGVETVNEDQFLRMIGDE 415


>gi|321469644|gb|EFX80623.1| hypothetical protein DAPPUDRAFT_318220 [Daphnia pulex]
          Length = 1045

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P      +     +    +V TG L+ + R +A+  V + G      +S+ T  ++ GD
Sbjct: 287 NPGSKPVPEGAPGCLTGLTIVVTGVLESLHREEAEGLVKKYGGKAPKAVSKNTSYLLAGD 346

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + G SKL KA+ L V +++E+ FL L+ 
Sbjct: 347 DAGPSKLSKAKDLNVPMLSEDDFLKLIA 374


>gi|297467831|ref|XP_002705355.1| PREDICTED: germ line transcription factor 1-like, partial [Bos
           taurus]
          Length = 183

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKA 701
             + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA
Sbjct: 2   AENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKA 61

Query: 702 QQLGVKIMNEEQFLFLLQ 719
             LG  I++E+  L L++
Sbjct: 62  AALGTNIIDEDGLLNLIR 79


>gi|46401853|ref|YP_006945.1| NAD-dependent DNA ligase, subunit B [Enterobacteria phage T5]
 gi|45775031|gb|AAS77163.1| NAD-dependent DNA ligase, subunit B [Enterobacteria phage T5]
          Length = 259

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 104/302 (34%), Gaps = 59/302 (19%)

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P+ CP C S++          +     C     C AQ  + +++F ++    ++G
Sbjct: 1   MKIEIPTQCPSCGSKL--------DLVNGQLFCRNKSNCPAQSSKLIENFCTK--MKLKG 50

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK- 544
            G + ++           +   +++F L             +   G      L   +N  
Sbjct: 51  FGPKTIEKLE--------LTKISELFYLTEEDL--------VRAVGSKVAAKLISELNTK 94

Query: 545 -RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            R +I     + SLGI  +G   A+ L++   S+Q+   +                    
Sbjct: 95  VRGDIDFGSVLGSLGIPLIGEVAAKKLSQNCTSFQDVKAD-------------------- 134

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEI----ENKKLVFTGTL 658
                 +    +  +P+    +E   K        + E  ++  +        +  TG+L
Sbjct: 135 --GKAGENYKAWLNSPQGKDVIELPWKFSKGIKGAKAEVIITDGLVAQPNGITVCITGSL 192

Query: 659 QKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQF 714
           Q    R  A  Y+  LG  V   +++    +I  D      S  +KA+  G++I++ ++ 
Sbjct: 193 QDFANRTDATNYLEGLGYTVKKSVTKDVKYLICEDESKRSSSSYKKAETNGIEILSIKEL 252

Query: 715 LF 716
           L 
Sbjct: 253 LE 254


>gi|51512055|gb|AAU05254.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage T5]
          Length = 260

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 104/302 (34%), Gaps = 59/302 (19%)

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P+ CP C S++          +     C     C AQ  + +++F ++    ++G
Sbjct: 2   MKIEIPTQCPSCGSKL--------DLVNGQLFCRNKSNCPAQSSKLIENFCTK--MKLKG 51

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK- 544
            G + ++           +   +++F L             +   G      L   +N  
Sbjct: 52  FGPKTIEKLE--------LTKISELFYLTEEDL--------VRAVGSKVAAKLISELNTK 95

Query: 545 -RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            R +I     + SLGI  +G   A+ L++   S+Q+   +                    
Sbjct: 96  VRGDIDFGSVLGSLGIPLIGEVAAKKLSQNCTSFQDVKAD-------------------- 135

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEI----ENKKLVFTGTL 658
                 +    +  +P+    +E   K        + E  ++  +        +  TG+L
Sbjct: 136 --GKAGENYKAWLNSPQGKDVIELPWKFSKGIKGAKAEVIITDGLVAQPNGITVCITGSL 193

Query: 659 QKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQF 714
           Q    R  A  Y+  LG  V   +++    +I  D      S  +KA+  G++I++ ++ 
Sbjct: 194 QDFANRTDATNYLEGLGYTVKKSVTKDVKYLICEDESKRSSSSYKKAETNGIEILSIKEL 253

Query: 715 LF 716
           L 
Sbjct: 254 LE 255


>gi|4103934|gb|AAD01890.1| replication factor C [Rattus norvegicus]
          Length = 1104

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNPG 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT  +++G D+  
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSRQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK +KA  LG KI++E+  L L++
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLIR 477


>gi|221487771|gb|EEE26003.1| brct domain-containing protein, putative [Toxoplasma gondii GT1]
          Length = 1094

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 11/122 (9%)

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
                DG+V+KV+E S+Q  LG RA  PRW  + KF +  A +++ D    +G+ G +  
Sbjct: 407 WDLPADGVVFKVNEVSVQLALGNRATGPRWAFARKFPQPFALSKIRDFVFSVGQFGSVHV 466

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA LEPV  G   +  A++   + +             R + VGD V V  +G   P +V
Sbjct: 467 VAALEPVRFGNLTVCRASVGTLETLSR-----------RQLAVGDEVYVHLSGHTTPLIV 515

Query: 415 DI 416
            I
Sbjct: 516 GI 517


>gi|237830775|ref|XP_002364685.1| NAD-dependent DNA ligase OB-fold domain containing protein
           [Toxoplasma gondii ME49]
 gi|211962349|gb|EEA97544.1| NAD-dependent DNA ligase OB-fold domain containing protein
           [Toxoplasma gondii ME49]
 gi|221507565|gb|EEE33169.1| DNA ligase, NAD-dependent, putative [Toxoplasma gondii VEG]
          Length = 1094

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 11/122 (9%)

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
                DG+V+KV+E S+Q  LG RA  PRW  + KF +  A +++ D    +G+ G +  
Sbjct: 407 WDLPADGVVFKVNEVSVQLALGNRATGPRWAFARKFPQPFALSKIRDFVFSVGQFGSVHV 466

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA LEPV  G   +  A++   + +             R + VGD V V  +G   P +V
Sbjct: 467 VAALEPVRFGNLTVCRASVGTLETLSR-----------RQLAVGDEVYVHLSGHTTPLIV 515

Query: 415 DI 416
            I
Sbjct: 516 GI 517


>gi|89268749|emb|CAJ82643.1| replication factor C (activator 1) 1 [Xenopus (Silurana)
           tropicalis]
          Length = 510

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKA 701
             + +E    V TG L+ I+R +A+  V + G  V+  +S+KT+ II+G + G SK EKA
Sbjct: 392 ADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKA 451

Query: 702 QQLGVKIMNEEQFLFLLQ 719
           +  G KI++E+  L L++
Sbjct: 452 EAFGTKILDEDGLLNLIR 469


>gi|126696079|ref|YP_001090965.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9301]
 gi|126543122|gb|ABO17364.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9301]
          Length = 249

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 112/307 (36%), Gaps = 64/307 (20%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++DD Y +    +I D ++D L++                             N
Sbjct: 5   LEERIEWYDDNY-RNGNALISDKQFDQLEKNLLR----------------------TNPN 41

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
              FK  + +   SLEK    + + +F+  +               +EPKIDG  + ++Y
Sbjct: 42  CDYFKKKNKLVLPSLEK----DSIDEFLKGLL--------ADTRLLIEPKIDGCAVALQY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G    A  R     G DV++ +  I  IP  L L    +++VRGE+Y           
Sbjct: 90  RDGTLEKAISR----KGTDVTSKLIKIQDIPNNLPLQ--GVLQVRGELYAPNQS------ 137

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                        +  ASG LR       ++ L+F    +  ++      QYE  + +  
Sbjct: 138 ---------PNISQRIASGFLRAKE--GFSQSLSFCAFQILNSTL----NQYESKKSLSK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSP 322
           LGF +   +   N    +  +       +    Y  DG+V K++   LQ    +     P
Sbjct: 183 LGFKIPQDIS-CNFTSQVEVFRKRWLEGKLFSEYPTDGIVVKINSRKLQLIREKSNLDYP 241

Query: 323 RWMISHK 329
            W ++ K
Sbjct: 242 YWQVAIK 248


>gi|326633002|ref|YP_004306591.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage SPC35]
 gi|321272196|gb|ADW80088.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage SPC35]
          Length = 259

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 105/302 (34%), Gaps = 59/302 (19%)

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P+ CP C S++          +     C     C AQ  + +++F ++    ++G
Sbjct: 1   MKIEIPTQCPSCGSKL--------DLVNGQLFCRNKSNCPAQSSKLIENFCTK--MKLKG 50

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK- 544
            G + ++           +   +++F L             +   G      L   +N  
Sbjct: 51  FGPKTIEKLE--------LTKISELFYLTEEDL--------VRAVGSKVAAKLISELNTK 94

Query: 545 -RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            R +I     + SLGI  +G   A+ L++   S+                     ++V  
Sbjct: 95  VRGDIDFGSVLGSLGIPLIGEVAAKKLSQNCTSF-------------------HDVKVDG 135

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEI----ENKKLVFTGTL 658
                 +    +  +P+    +E   K        + +  ++ E+        +  TG+L
Sbjct: 136 ---KAGENYKAWLNSPQGKDVIELPWKFSTGIKGAKADIIITDELVAQPNGIAVCITGSL 192

Query: 659 QKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQF 714
           Q    R  A  Y+  LG  V   +++    +I  D      S  +KA+  G++I++ ++ 
Sbjct: 193 QDFANRTDATNYLESLGYTVKKSVTKDVKYLICEDESKRSSSSYKKAETNGIEILSIKEL 252

Query: 715 LF 716
           L 
Sbjct: 253 LE 254


>gi|170065938|ref|XP_001868075.1| replication factor C large subunit [Culex quinquefasciatus]
 gi|167862647|gb|EDS26030.1| replication factor C large subunit [Culex quinquefasciatus]
          Length = 1042

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           ++     +P      K   + +   + V TG ++ ++R +  + +   G  V   +S+K 
Sbjct: 252 QSRQGPANPGSKEIPKGTPTCLAGLQFVVTGVMESMERDECAQVIKDFGGKVVTSVSKKL 311

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             ++VG++ G SKL KA +LG+  ++E+Q   L+++ +
Sbjct: 312 THMVVGEDAGPSKLAKADELGIPQISEDQLFDLIRERS 349


>gi|330883891|gb|EGH18040.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 105

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H +    + K+ +   ++ ++      W           ++PK+DG  +T+ YE G+ V
Sbjct: 2   PHPVAHTGVNKLADESSVKDWLEGRNDLW-----------IQPKVDGVAVTLVYENGQLV 50

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
            A  RGDG  G+D ++  R I TIP+ L    PE   ++GE+Y   +D + 
Sbjct: 51  QAISRGDGRKGQDWTSQARLIKTIPQHL--PQPESAILQGELYWRLDDHIQ 99


>gi|222616174|gb|EEE52306.1| hypothetical protein OsJ_34316 [Oryza sativa Japonica Group]
          Length = 929

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
                         +     +     V +GTL  ++R +A + + + G  V+  +S+KT+
Sbjct: 233 ERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTN 292

Query: 687 IIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQ---YNTTLRIHDDD 731
            ++  ++ G  K  KA++LGV  + E+    ++++      T+  H  D
Sbjct: 293 YLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSD 341


>gi|159029660|emb|CAO87738.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 636

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRV---PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
            +F+++   I  +  +  +S   V   P    +IA+           +      ++  + 
Sbjct: 491 DDFSRQTAPITTNEPEAIISETLVVEEPETPPVIAKETPVVAAEKITVADTSLEVQPAAK 550

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
            +   +++  + +  K +V  GT  KI R +A+  +  +G  V+   S  TD I++G  P
Sbjct: 551 IVQTSQESAENTLRGKTVVILGTFSKISREQAKSLIINVGGTVTGSPSANTDYILLGKAP 610

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G KL+KAQ+LG+K ++E QFL +++
Sbjct: 611 GEKLKKAQKLGIKTLSEAQFLQMVE 635


>gi|218185964|gb|EEC68391.1| hypothetical protein OsI_36544 [Oryza sativa Indica Group]
          Length = 1014

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
                         +     +     V +GTL  ++R +A + + + G  V+  +S+KT+
Sbjct: 235 ERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTN 294

Query: 687 IIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQ---YNTTLRIHDDD 731
            ++  ++ G  K  KA++LGV  + E+    ++++      T+  H  D
Sbjct: 295 YLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSD 343


>gi|115485959|ref|NP_001068123.1| Os11g0572100 [Oryza sativa Japonica Group]
 gi|108864532|gb|ABA94349.2| BRCA1 C Terminus domain containing protein, expressed [Oryza sativa
           Japonica Group]
 gi|113645345|dbj|BAF28486.1| Os11g0572100 [Oryza sativa Japonica Group]
 gi|215697840|dbj|BAG92033.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1021

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
                         +     +     V +GTL  ++R +A + + + G  V+  +S+KT+
Sbjct: 242 ERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTN 301

Query: 687 IIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQ---YNTTLRIHDDD 731
            ++  ++ G  K  KA++LGV  + E+    ++++      T+  H  D
Sbjct: 302 YLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSD 350


>gi|30314655|dbj|BAC76085.1| replication factor C 110 kDa subunit [Oryza sativa Japonica Group]
          Length = 1021

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
                         +     +     V +GTL  ++R +A + + + G  V+  +S+KT+
Sbjct: 242 ERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTN 301

Query: 687 IIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQ---YNTTLRIHDDD 731
            ++  ++ G  K  KA++LGV  + E+    ++++      T+  H  D
Sbjct: 302 YLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSD 350


>gi|157311015|ref|YP_001469010.1| gp012 [Lactococcus phage KSY1]
 gi|108861355|gb|ABG21554.1| gp012 [Lactococcus phage KSY1]
          Length = 471

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 149/417 (35%), Gaps = 94/417 (22%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
            +E+       Y+   P++ D+ YD L          F +L                   
Sbjct: 4   VKELQEA----YEQGTPLMTDAAYDVLVGDN----EEFTEL-----------------ED 38

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
             + + H++   +  K  N+++ + +   +          +     +PK DG    +  E
Sbjct: 39  ETYVIKHAVFMGTCPKTRNVKEFKLYCKGLL--------GTTNVVFQPKFDGVSGELIVE 90

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            GK    + RG+G+ G+D+S     +  I     + +P +  + GE     ++       
Sbjct: 91  HGKITAISSRGNGNFGQDLSD----LKDILFNDVVIMPTVRAIYGEFVWRNDN------- 139

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
                  P    RN  SG L +    +   +L+F  +               ++  M+  
Sbjct: 140 -------PSQKDRNLVSGYLNKK-VHNKEPHLDFIAY-------KAIDSNGRVMDFMQSQ 184

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD-IDGLVYKVDEFSLQKQLGERARSPR 323
            +    G++           +++   +   L     DG   +  +    K+ G   ++  
Sbjct: 185 LYTT--GIK-----------WSDCAILTDELEIPNFDG---RYPDI---KRDGTIIKNSV 225

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
            + + K   +   T +  +  +  +    +  A+LEPV IG   +++ TL    YIK + 
Sbjct: 226 DIFALKPEPEAGITTITGVTWKKCK-SKFSATAQLEPVTIGAVNVSSVTLP-LSYIKDM- 282

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                     D+ +GD+V++ R G+VIP +  ++  E   ++ P    S C  C   
Sbjct: 283 ----------DLMIGDKVMISRRGDVIPCIEFLV--EHTEESSPIINDSKCEYCGGH 327


>gi|289614472|emb|CBI58756.1| unnamed protein product [Sordaria macrospora]
          Length = 1075

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
           D +  I  P           ++         V A     +  I   E      +  K  V
Sbjct: 285 DNIPTIEAPDAPPKDENFKFDWKSKAAGGGNVGAPPMAGTAEIPEGEI---DCLAGKTFV 341

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEE 712
           FTG L+ I R  AQ  V + G  V+   S KTD +++GD+ G SKL K ++ G+K ++EE
Sbjct: 342 FTGLLKTIAREDAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHGIKTIDEE 401

Query: 713 QFLFLLQ 719
              +L++
Sbjct: 402 GLFYLIR 408


>gi|325119805|emb|CBZ55358.1| putative NAD-dependent DNA ligase OB-fold domain containing protein
            [Neospora caninum Liverpool]
          Length = 1981

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 11/121 (9%)

Query: 296  PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
                DG+V+KV     Q  LG RA  PRW  + KF +  A +R+ D    +G+ G +  V
Sbjct: 1064 DVPADGVVFKVLSLPAQLLLGNRATGPRWAFARKFPQPFALSRIRDFAFSVGQFGYVHVV 1123

Query: 356  ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
            A LEPV +G   I+ A++   + +             R + VGD V V  +G   P +V 
Sbjct: 1124 AALEPVRLGNLTISRASVGTIETLAR-----------RGLAVGDEVYVHLSGHTTPLIVG 1172

Query: 416  I 416
            I
Sbjct: 1173 I 1173



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           ++   +  L     ++E   L + +   D  Y+  +   + D+ YD LK R   +    P
Sbjct: 271 KEDCTVSPLPDPSEKEEYHKLVETLRACDRAYHVGAHSPLPDAVYDQLKARLLHLEEVHP 330

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVT 90
            L   E P+     +G         VT
Sbjct: 331 SLVTPESPSSY---VGAGP---FASVT 351



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 18/122 (14%)

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPT---IP----RVLSLNIP--------EIIEVRGEV 191
           + V A+ RG+G  GED+S  +R +     +P      L  + P        + +E+RGE+
Sbjct: 707 ELVDASPRGNGSWGEDISHSVRVMHQAGRLPVAFSTRLLTSQPLAPGALANQFLEIRGEL 766

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           ++ +++F    +     G+    + R+AA GI    +  +    L F  +GL +++E+ +
Sbjct: 767 FLPRSNFQDYVERRRKEGKNTPLHERHAARGIA---DTGEHADLLCFAAYGLVESAEVAS 823

Query: 252 KG 253
             
Sbjct: 824 DT 825


>gi|195343531|ref|XP_002038351.1| GM10782 [Drosophila sechellia]
 gi|194133372|gb|EDW54888.1| GM10782 [Drosophila sechellia]
          Length = 980

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++P      K     +     V TG L+ ++R +A+  + + G  V  ++ +K   ++V
Sbjct: 221 CLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVV 280

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
           G+  G  KL  A +L + I++E+    L+++ +   ++
Sbjct: 281 GEEAGPKKLAMADELNIPILSEDGLFDLIREKSGNAKL 318


>gi|59897250|gb|AAX12045.1| DNA ligase [Enterobacteria phage T5]
          Length = 259

 Score =  103 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 104/302 (34%), Gaps = 59/302 (19%)

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P+ CP C S++          +     C     C AQ  + +++F ++    ++G
Sbjct: 1   MKIEIPTQCPSCGSKL--------DLVNGQLFCRNKSNCPAQSSKLIENFCTK--MKLKG 50

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK- 544
            G + ++           +   +++F L             +   G      L   +N  
Sbjct: 51  FGPKTIEKLE--------LTKISELFYLTEEDL--------VRAVGSKVAAKLISELNTK 94

Query: 545 -RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            R +I     + SLGI  +G   A+ L++   S+Q+   +                    
Sbjct: 95  VRGDIDFGSVLGSLGIPLIGEVAAKKLSQNCTSFQDVKAD-------------------- 134

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEI----ENKKLVFTGTL 658
                 +    +  +P+    +E   K        + E  ++  +        +  TG+L
Sbjct: 135 --GKAGENYKAWLNSPQGKDVIELPWKFSKGIKGAKAEVIITDGLVAQPNGITVCITGSL 192

Query: 659 QKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQF 714
           Q    R  A  Y+  LG  V   +++    +I  D      S  +KA+  G++I++ ++ 
Sbjct: 193 QDFANRTDATNYLEGLGYTVKKSVTKDVKCLICEDESKRSSSSYKKAETNGIEILSIKEL 252

Query: 715 LF 716
           L 
Sbjct: 253 LE 254


>gi|19173693|ref|NP_597496.1| DNA REPLICATION FACTOR C SUBUNIT [Encephalitozoon cuniculi GB-M1]
 gi|19170899|emb|CAD26673.1| DNA REPLICATION FACTOR C SUBUNIT [Encephalitozoon cuniculi GB-M1]
          Length = 568

 Score =  103 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
             ++ K  VFTG + KI R  A+  V  LG   +A+ S KT  ++ GDNPG SK++KA++
Sbjct: 6   EPLKGKVFVFTGDM-KISRDDAKTKVMVLGGRCTAVPSSKTTFLVAGDNPGPSKMQKAKE 64

Query: 704 LGVKIMNEEQFLFLLQQYNTTL 725
           LG+K+++EE+F  L++  +  L
Sbjct: 65  LGIKVLDEEEFDSLIKDTSKAL 86


>gi|312282245|dbj|BAJ33988.1| unnamed protein product [Thellungiella halophila]
          Length = 933

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P  G  E    +   +     V +GTL  ++R +A++ + + G  V+  +S+KT  ++  
Sbjct: 165 PHKGEKEVPEGNPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTTYLLCD 224

Query: 692 DN-PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++  G K EKA++LG K + E+    +++
Sbjct: 225 EDIGGRKSEKAKELGTKFLTEDGLFDMIR 253


>gi|18376023|emb|CAB91757.2| related to replication factor C protein [Neurospora crassa]
          Length = 1092

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  K  VFTG L+ I R +AQ  V + G  V+   S KTD +++GD+ G SKL K ++ G
Sbjct: 344 LAGKTFVFTGLLKTIAREEAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 403

Query: 706 VKIMNEEQFLFLLQ 719
           +K ++EE   +L++
Sbjct: 404 IKTIDEEGLFYLIR 417


>gi|164424568|ref|XP_963539.2| hypothetical protein NCU06767 [Neurospora crassa OR74A]
 gi|157070569|gb|EAA34303.2| hypothetical protein NCU06767 [Neurospora crassa OR74A]
          Length = 1086

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  K  VFTG L+ I R +AQ  V + G  V+   S KTD +++GD+ G SKL K ++ G
Sbjct: 338 LAGKTFVFTGLLKTIAREEAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 397

Query: 706 VKIMNEEQFLFLLQ 719
           +K ++EE   +L++
Sbjct: 398 IKTIDEEGLFYLIR 411


>gi|62472391|ref|NP_001014605.1| germ line transcription factor 1, isoform B [Drosophila
           melanogaster]
 gi|21483228|gb|AAM52589.1| AT18625p [Drosophila melanogaster]
 gi|61679311|gb|AAX52937.1| germ line transcription factor 1, isoform B [Drosophila
           melanogaster]
          Length = 1008

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++P      K     +     V TG L+ ++R +A+  + + G  V  ++ +K   ++V
Sbjct: 221 CLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVV 280

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           G+  G  KL  A++L + I++E+    L+++ +   +
Sbjct: 281 GEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGIAK 317


>gi|198414852|ref|XP_002119468.1| PREDICTED: similar to ISRE-binding protein, partial [Ciona
           intestinalis]
          Length = 568

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
              +      +P      K   + +E    V TG    + R + +  V + G  V + +S
Sbjct: 259 KQWQNRGGPPNPGSKEIPKGEKNCMEGLSFVITGVQDSLSREEIKSLVERYGGKVVSAVS 318

Query: 683 RKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            +T  +I G + G SKL KA+Q   KI+ E++FL L++
Sbjct: 319 GRTSYLITGTDAGESKLNKAKQHKTKIIEEDEFLDLIR 356


>gi|17737765|ref|NP_524229.1| germ line transcription factor 1, isoform A [Drosophila
           melanogaster]
 gi|12644230|sp|P35600|RFC1_DROME RecName: Full=Replication factor C subunit 1; AltName:
           Full=Activator 1 140 kDa subunit; AltName:
           Full=Activator 1 subunit 1; AltName: Full=Germline
           transcription factor 1; AltName: Full=Replication factor
           C large subunit
 gi|2121267|gb|AAB58311.1| replication factor C large subunit [Drosophila melanogaster]
 gi|7296805|gb|AAF52082.1| germ line transcription factor 1, isoform A [Drosophila
           melanogaster]
 gi|28317228|gb|AAO39621.1| GH06471p [Drosophila melanogaster]
          Length = 986

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++P      K     +     V TG L+ ++R +A+  + + G  V  ++ +K   ++V
Sbjct: 221 CLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVV 280

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           G+  G  KL  A++L + I++E+    L+++ +   +
Sbjct: 281 GEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGIAK 317


>gi|304728|gb|AAA28573.1| transcription factor [Drosophila melanogaster]
          Length = 986

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++P      K     +     V TG L+ ++R +A+  + + G  V  ++ +K   ++V
Sbjct: 221 CLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVV 280

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           G+  G  KL  A++L + I++E+    L+++ +   +
Sbjct: 281 GEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGIAK 317


>gi|195568307|ref|XP_002102159.1| GD19753 [Drosophila simulans]
 gi|194198086|gb|EDX11662.1| GD19753 [Drosophila simulans]
          Length = 980

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++P      K     +     V TG L+ ++R +A+  + + G  V  ++ +K   ++V
Sbjct: 221 CLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVV 280

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
           G+  G  KL  A +L + I++E+    L+++ +   ++
Sbjct: 281 GEEAGPKKLAMADELNIPILSEDGLFDLIREKSGIAKL 318


>gi|242068901|ref|XP_002449727.1| hypothetical protein SORBIDRAFT_05g022200 [Sorghum bicolor]
 gi|241935570|gb|EES08715.1| hypothetical protein SORBIDRAFT_05g022200 [Sorghum bicolor]
          Length = 946

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 1/97 (1%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                 +     +     V +GTL  ++R +A + + + G  V+  +S+KT  ++  ++ 
Sbjct: 239 GEKEVPEGAPDCLSGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTSYLLADEDI 298

Query: 695 GS-KLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
           G  K  KA+ LGV  + E+    L+++        D 
Sbjct: 299 GGVKSNKAKDLGVPFLTEDGLFDLIRKSKPAKAPVDK 335


>gi|213583734|ref|ZP_03365560.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 151

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 9/158 (5%)

Query: 225 RRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVS 283
            R +       L  F+               E L ++   GF +      A      +  
Sbjct: 1   MRQDNASALNSLGIFIWAWPDGPANMP----ERLSQLAKAGFSLTKKYSLAVKDASEVER 56

Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343
                 +  S LP+  DG+V ++ +    +    R     W+ + K+       ++  I 
Sbjct: 57  ARQSWLT--SALPFVTDGVVIRMAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQ 112

Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
             +G++G +T VA L PV +    +    + +    + 
Sbjct: 113 FSVGKSGKITVVASLVPVILDDKRVQRVNIGSVKRWEA 150


>gi|330921995|ref|XP_003299650.1| hypothetical protein PTT_10692 [Pyrenophora teres f. teres 0-1]
 gi|311326573|gb|EFQ92247.1| hypothetical protein PTT_10692 [Pyrenophora teres f. teres 0-1]
          Length = 1085

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
           G   +   + +     VFTG LQK  R ++QE V + G  V+   S+KT  +++G + G 
Sbjct: 345 GDMPQGSDTCLAGLTFVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTSYVVLGSDAGY 404

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           SKL K + + +K ++E+    L+++        D
Sbjct: 405 SKLAKIRDMNIKTIDEDGLTQLIEKLTAAGNKGD 438


>gi|27922874|gb|AAO25527.1| DNA ligase [Paramecium aurelia]
          Length = 143

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 20/144 (13%)

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H +    + K+ +   L  ++      W           ++PK+DG  +T+ Y  GK 
Sbjct: 20  VMHPVAHTGVRKMVDKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKL 68

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
             A  RG+G  GED +  +  I  +P+ +S  +     ++GE+++ +   +         
Sbjct: 69  NKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGEIFLQREGHIQQ------- 120

Query: 209 GRKPYANPRNAASGILRRLNPTDI 232
            +    N R   +G++ R + +D 
Sbjct: 121 -QMGGINARAKVAGLMXRQDDSDT 143


>gi|123968278|ref|YP_001009136.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           AS9601]
 gi|123198388|gb|ABM70029.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           AS9601]
          Length = 249

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 112/307 (36%), Gaps = 64/307 (20%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++DD Y +    +I D ++D L++                             N
Sbjct: 5   LEERIEWYDDNY-RNGNALISDKQFDQLEKNLLR----------------------TNPN 41

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
              FK  + I   SLEK    + + +F+  +               +EPKIDG  + ++Y
Sbjct: 42  CDYFKKKNKIVLPSLEK----DSIDEFLKGLL--------VDTRLLIEPKIDGCAVALQY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G    A  R     G DV++ +  +  IP  L L    +++VRGE+Y           
Sbjct: 90  RDGTLEKAISR----KGADVTSKLIKVQDIPNNLPLR--GVLQVRGELYAPNQS------ 137

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                        +  ASG LR       +  L+F    +  ++      QYE  + +  
Sbjct: 138 ---------PNISQKIASGFLRAKE--GFSESLSFCAFQILNSTL----NQYESKKSLSK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSP 322
           LGF +   +   N    +  +  +    +    Y  DG+V K++   LQ    +     P
Sbjct: 183 LGFTIPQDIS-CNFTSQVEVFRKQWLEGKLFSKYPTDGIVVKINSRKLQLIREKSNLDYP 241

Query: 323 RWMISHK 329
            W ++ K
Sbjct: 242 YWQVAIK 248


>gi|242049958|ref|XP_002462723.1| hypothetical protein SORBIDRAFT_02g030910 [Sorghum bicolor]
 gi|241926100|gb|EER99244.1| hypothetical protein SORBIDRAFT_02g030910 [Sorghum bicolor]
          Length = 1025

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 1/105 (0%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
                         +     +     V +GTL  ++R +A + + + G  V+  +S+KT 
Sbjct: 246 ERKDPPHKGEKEVPEGAPDCLSGLTFVISGTLDSLEREEAADLIKRYGGRVTGSISKKTS 305

Query: 687 IIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
            ++  ++ G  K  KA+ LGV  + E+    L+++        D 
Sbjct: 306 YLLADEDLGGVKSNKAKDLGVPFLTEDGLFDLIRKSKPAKAPVDK 350


>gi|194898632|ref|XP_001978873.1| GG12593 [Drosophila erecta]
 gi|190650576|gb|EDV47831.1| GG12593 [Drosophila erecta]
          Length = 981

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++P      K     +     V TG L+ ++R +A+  + + G  V  ++ +K   ++V
Sbjct: 220 CLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVV 279

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           G+  G  KL  A++L + I++E+    L+++ +   +
Sbjct: 280 GEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGMAK 316


>gi|310794495|gb|EFQ29956.1| replication factor RFC1 C terminal domain-containing protein
           [Glomerella graminicola M1.001]
          Length = 1026

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +       +     +     VFTG LQ + R + Q  V + G  V+   S KT  +++GD
Sbjct: 293 NAGTAELPEGEDECLSGLTFVFTGVLQTLGREEGQALVKKYGGKVTGAPSSKTSYVVLGD 352

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + G SKL+K + + +K +NEE    L+++   
Sbjct: 353 DAGPSKLKKIRDMNIKTINEEGLFELIRRLPA 384


>gi|322695637|gb|EFY87442.1| putative replication factor C protein [Metarhizium acridum CQMa
           102]
          Length = 1062

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKL 698
            +     +     VFTG LQ I R +AQ  V + G  V+   S KT  +++GD+ G SKL
Sbjct: 335 PEGEEECLSGLSFVFTGVLQTIGRDEAQALVKRYGGKVTGQPSSKTSFVVLGDDAGPSKL 394

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNT 723
            K +  G+K ++E     L+++   
Sbjct: 395 AKIKSHGIKTIDENGLFDLIRKLPA 419


>gi|213584511|ref|ZP_03366337.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 212

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 81/254 (31%), Gaps = 44/254 (17%)

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                    DI  GD++LV  AG+ IP++ +++   R                     R 
Sbjct: 1   GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSR--------------------ERS 40

Query: 445 LNPKTGKLVAAHRCT-GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
                G    +  C      C  Q + RL    SR A  ++G+G+       ++      
Sbjct: 41  KPVPPGSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRALHQTHR---- 96

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
                 IF+       ++ +I N  G        ++   N  R  S  R+I ++ I    
Sbjct: 97  ---FEHIFSWLA---LTSAQIANTPGVAKGKSEQIWRQFNLARRQSFTRWIMAMDIPL-- 148

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A   A    S++                     ++P  G+  A  ++++  NP+   
Sbjct: 149 -TQAALQASGDRSWEQLLMRTE----------QHWRQLPATGERRAGRVIDWRNNPQINA 197

Query: 624 AVEALLKEVSPSIG 637
               L  +  P  G
Sbjct: 198 LSRWLATQHIPGFG 211


>gi|297812313|ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319877|gb|EFH50299.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 960

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN- 693
                 +     +     V +GTL  ++R +A++ + + G  ++  +S+KT  ++  ++ 
Sbjct: 199 GEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTTYLLCDEDI 258

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            G K EKA++LG K + E+    +++      +
Sbjct: 259 GGRKSEKAKELGTKFLTEDGLFDMIRSSKPVKK 291


>gi|195497183|ref|XP_002095995.1| GE25440 [Drosophila yakuba]
 gi|194182096|gb|EDW95707.1| GE25440 [Drosophila yakuba]
          Length = 986

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++P      K  +  +     V TG L+ ++R +A+  + + G  V  ++ +K   +++
Sbjct: 220 CLNPGSKEIPKGSTDCLSGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVI 279

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           G+  G  KL  A++L + I++E+    L+++ +   +
Sbjct: 280 GEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGMAK 316


>gi|303389467|ref|XP_003072966.1| DNA replication factor C subunit [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302109|gb|ADM11606.1| DNA replication factor C subunit [Encephalitozoon intestinalis ATCC
           50506]
          Length = 566

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQ 703
             ++ K  VFTG + K+ R  A+  V  LG   +   S KT  ++VGDNPG  K++KA +
Sbjct: 6   EPLKGKVFVFTGDM-KMSRDDAKARVMVLGGRCTTAPSSKTSFLVVGDNPGPMKIQKANE 64

Query: 704 LGVKIMNEEQFLFLLQ 719
           L +KI+NEE+F+ L++
Sbjct: 65  LNIKILNEEEFVKLVE 80


>gi|322705232|gb|EFY96819.1| putative replication factor C protein [Metarhizium anisopliae ARSEF
           23]
          Length = 1030

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKL 698
            +     +     VFTG LQ I R +AQ  V + G  V+   S KT  +++GD+ G SKL
Sbjct: 301 PEGQEECLSGLSFVFTGVLQTIGRDEAQALVKRYGGKVTGQPSSKTSFVVLGDDAGPSKL 360

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNT 723
            K +  G+K ++E     L+++   
Sbjct: 361 AKIKSHGIKTIDENGLFDLIRKLPA 385


>gi|254526990|ref|ZP_05139042.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus
           marinus str. MIT 9202]
 gi|221538414|gb|EEE40867.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus
           marinus str. MIT 9202]
          Length = 249

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 111/307 (36%), Gaps = 64/307 (20%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++DD Y +    +I D ++D L++                             N
Sbjct: 5   LEERIEWYDDNY-RNGNALISDKQFDQLEKNLLR----------------------TNPN 41

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
              FK  + +   SLEK    + + +F+  +               +EPKIDG  + ++Y
Sbjct: 42  CDYFKKKNKLVLPSLEK----DSIDEFLKGLL--------VDTRLLIEPKIDGCAVALQY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G    A  R     G DV+  +  I  IP  L L    +++VRGE+Y           
Sbjct: 90  RDGTLEKAISR----KGVDVTTKLIKIQDIPNNLPLR--GVLQVRGELYAPNQS------ 137

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                        +  ASG LR       +  L+F    +  ++      QYE  + +  
Sbjct: 138 ---------PNISQRIASGFLRAKE--GFSERLSFCAFQILNSTL----NQYESKKNLSK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSP 322
           LGF +   +   N    +  +  +    +    Y  DG+V K++   LQ    +     P
Sbjct: 183 LGFTITQDIS-CNFTSQVDVFRKQWLEGKLFSKYPTDGIVVKINSRKLQLIREKSNLDYP 241

Query: 323 RWMISHK 329
            W ++ K
Sbjct: 242 YWQVAIK 248


>gi|157413113|ref|YP_001483979.1| hypothetical protein P9215_07781 [Prochlorococcus marinus str. MIT
           9215]
 gi|157387688|gb|ABV50393.1| Hypothetical protein P9215_07781 [Prochlorococcus marinus str. MIT
           9215]
          Length = 249

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 112/307 (36%), Gaps = 64/307 (20%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++DD Y +    +I D ++D L++                             N
Sbjct: 5   LEERIEWYDDNY-RNGNALISDKQFDQLEKNLLR----------------------TNPN 41

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
              FK  + +   SLEK    + + +F+  +               +EPKIDG  + ++Y
Sbjct: 42  CDYFKKKNKLVLPSLEK----DSIDEFLKGLL--------VDTRLLIEPKIDGCAVALQY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G    A  R     G D+++ +  +  IP  L L    +++VRGE+Y           
Sbjct: 90  RDGTLEKAISR----KGVDITSKLIKVQDIPNNLPLR--GVLQVRGELYAPNQS------ 137

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                        +  ASG LR       +  L+F    +  ++      QYE  + +  
Sbjct: 138 ---------PNISQRIASGFLRAKE--GFSERLSFCAFQILNSTL----NQYESKKNLSK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSP 322
           LGF +   +   N    +  +  +    +    Y  DG+V K++   LQ    +     P
Sbjct: 183 LGFTIPQDIS-CNFTSQVEVFRKQWLEGKLFSKYPTDGIVVKINSRKLQLIREKSNLDYP 241

Query: 323 RWMISHK 329
            W ++ K
Sbjct: 242 YWQVAIK 248


>gi|260951239|ref|XP_002619916.1| hypothetical protein CLUG_01075 [Clavispora lusitaniae ATCC 42720]
 gi|238847488|gb|EEQ36952.1| hypothetical protein CLUG_01075 [Clavispora lusitaniae ATCC 42720]
          Length = 876

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 8/154 (5%)

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A    + +N AQ+ ++  A      +    +P   +   +  + ++        V A   
Sbjct: 75  ATSGSTTRNVAQDSSSGTADEILSQIDDAELPEAMET--EGKLNYFALKNKQQNVAAPSG 132

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            V   I        + +    +VFTG L  + R  A+    Q GA V+  +S+KT ++++
Sbjct: 133 NVELPIA-----APNCLGGLTIVFTGVLPNLDRDAAESIAKQYGARVTKSISKKTSLVVI 187

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           G+  G SK++K +   +K ++E+ F+ LL++   
Sbjct: 188 GEEAGPSKVKKIKDFKIKAISEDGFIELLRRMPA 221


>gi|239995022|ref|ZP_04715546.1| NAD-dependent DNA ligase [Alteromonas macleodii ATCC 27126]
          Length = 70

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
          S+EQA++++ +L   ++ ++  YY    P + D+ YD   +   A+   +P L   + PN
Sbjct: 4  SLEQAKQQIETLRNTLNEYNYQYYVMDDPSVPDAVYDRDMQALIALEKQYPTL---QSPN 60

Query: 73 GPLNKIGGEM 82
           P  K+GG  
Sbjct: 61 SPSQKVGGAA 70


>gi|159477641|ref|XP_001696917.1| DNA replication factor C complex subunit 1 [Chlamydomonas
           reinhardtii]
 gi|158274829|gb|EDP00609.1| DNA replication factor C complex subunit 1 [Chlamydomonas
           reinhardtii]
          Length = 1182

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +     +  K  V +G L  + R +A +Y+ + G  V+  +S KT  ++VG + G 
Sbjct: 380 KEAPRGHPDCLTGKTFVISGVLDSLGREEATDYIKRHGGRVTGAVSGKTSFLVVGHHTGR 439

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK  KA++ G K+++E+    L++
Sbjct: 440 SKYRKAREHGTKVIDEDGLFSLIR 463


>gi|198453986|ref|XP_001359419.2| GA10826 [Drosophila pseudoobscura pseudoobscura]
 gi|198132600|gb|EAL28565.2| GA10826 [Drosophila pseudoobscura pseudoobscura]
          Length = 988

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++P      K     ++    V TG L+ ++R +A+  + + G  V  ++ +K   ++V
Sbjct: 231 CLNPGSKEIPKGTPDCLKGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLMYLVV 290

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           G+  G  KL  A++L V I++E+    L+++ +   +
Sbjct: 291 GEEAGPKKLATAEELNVTILSEDGLFDLIREKSGQGK 327


>gi|312213054|emb|CBX93136.1| similar to chromosome transmission fidelity factor [Leptosphaeria
           maculans]
          Length = 1098

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
           G       + +     VFTG LQ+  R +AQE V + G  V+   S+KT+ +++G + G 
Sbjct: 352 GDMPSGSETCLAGLNFVFTGVLQRWGRTEAQELVKRHGGKVTGAPSKKTNYVVLGSDAGP 411

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           SKL+K + + +K ++E+    L+++        D
Sbjct: 412 SKLQKIKDMDIKTIDEDGLTLLIEKLTEAGNKGD 445


>gi|195452278|ref|XP_002073285.1| GK14054 [Drosophila willistoni]
 gi|194169370|gb|EDW84271.1| GK14054 [Drosophila willistoni]
          Length = 983

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 51/102 (50%), Gaps = 1/102 (0%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++       K     ++    V TG L+ ++R +A+  + + G  V  ++ +K   ++V
Sbjct: 202 CLNHGSKEIPKGAPDCLKGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVV 261

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           G++ G  KL  A++L + I++E+    L+++ +   +   ++
Sbjct: 262 GEDAGPKKLAVAEELNIPILSEDGLFDLIRELSGQSKGPQEN 303


>gi|195152678|ref|XP_002017263.1| GL21622 [Drosophila persimilis]
 gi|194112320|gb|EDW34363.1| GL21622 [Drosophila persimilis]
          Length = 979

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++P      K     ++    V TG L+ ++R +A+  + + G  V  ++ +K   ++V
Sbjct: 231 CLNPGSKEIPKGTPDCLKGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLMYLVV 290

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           G+  G  KL  A++L V I++E+    L+++ +   +
Sbjct: 291 GEEAGPKKLATAEELNVTILSEDGLFDLIREKSGQGK 327


>gi|242011918|ref|XP_002426690.1| Replication factor C subunit, putative [Pediculus humanus corporis]
 gi|212510861|gb|EEB13952.1| Replication factor C subunit, putative [Pediculus humanus corporis]
          Length = 842

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P+     K  S+ ++N   V TG L  +++ KA E + + G  V+  +S+KTD I+VG+
Sbjct: 110 NPNSKTIPKGTSNCLQNLTFVITGILDSLEKKKAVELIQKYGGRVTTQVSKKTDFIVVGE 169

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            PG SKL KA++   K +NE++ L L+ + +
Sbjct: 170 EPGESKLSKAEKFCTKKINEDELLALITERS 200


>gi|213972533|ref|NP_001135428.1| germ line transcription factor 1 [Nasonia vitripennis]
          Length = 1100

 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P      +     + N   + TG L  ++R +A+E +T+ G  +   +S+K + II+G+
Sbjct: 321 NPGSKEIPEGAEQCLANLSFLITGVLDSLERGEAEELITKYGGRMLHSVSKKLNYIIIGE 380

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             G SKL KA+ L +K ++E+  L L++
Sbjct: 381 EAGPSKLAKAESLNIKKISEDGLLELIR 408


>gi|224054238|ref|XP_002298160.1| predicted protein [Populus trichocarpa]
 gi|222845418|gb|EEE82965.1| predicted protein [Populus trichocarpa]
          Length = 550

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN- 693
                 +   + +     V +GTL  ++R +A++ + + G  V+  +S+KT  ++  ++ 
Sbjct: 192 GEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTSYLLCDEDI 251

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
            G K  KA++LG   + E+     +     +     +D
Sbjct: 252 EGRKSSKAKELGTPFLTEDGLFDKILSSKNSKAPARED 289


>gi|116205063|ref|XP_001228342.1| hypothetical protein CHGG_10415 [Chaetomium globosum CBS 148.51]
 gi|88176543|gb|EAQ84011.1| hypothetical protein CHGG_10415 [Chaetomium globosum CBS 148.51]
          Length = 1060

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKL 698
            +     +  K  VFTG L+ I R + Q  V + G  V+   S KTD +++GD+ G SKL
Sbjct: 307 PEGEDDCLVGKSFVFTGLLKTISREEGQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKL 366

Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719
            K ++ G+K ++EE   +L++
Sbjct: 367 RKIKEHGIKTIDEEGLFYLIK 387


>gi|167520484|ref|XP_001744581.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776912|gb|EDQ90530.1| predicted protein [Monosiga brevicollis MX1]
          Length = 554

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +   K V TG L+ ++R   QE V   G V+   +S++ D ++ GD PG SK+ KA+ L 
Sbjct: 6   LGGLKFVITGVLESLEREDVQELVKDHGGVIQKSVSKRVDYVVAGDEPGPSKMSKARDLK 65

Query: 706 VKIMNEEQFLFLLQ 719
           +K+++E+    L++
Sbjct: 66  LKVLDEDGLFELIR 79


>gi|242809846|ref|XP_002485458.1| DNA replication factor C subunit Rfc1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218716083|gb|EED15505.1| DNA replication factor C subunit Rfc1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 1028

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
            N  A        +           + +     VFTG L  + R + Q  V + G  V+ 
Sbjct: 277 FNFAAAARSRTPPAAGSAELPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTG 336

Query: 680 ILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             S KT  +++G + G SKL K +++ +K + EE    L+++    
Sbjct: 337 APSSKTSYVVLGSDAGPSKLRKIKEMNIKTIGEEGLFELIRRLPAN 382


>gi|212537239|ref|XP_002148775.1| DNA replication factor C subunit Rfc1, putative [Penicillium
           marneffei ATCC 18224]
 gi|210068517|gb|EEA22608.1| DNA replication factor C subunit Rfc1, putative [Penicillium
           marneffei ATCC 18224]
          Length = 1031

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
            N  A        +           + +     VFTG L  + R + Q  V + G  V+ 
Sbjct: 277 FNFAAAGRSRTPPAAGSAEIPVGAENCLAGLSFVFTGVLDSLGREEGQSLVKRYGGKVTG 336

Query: 680 ILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             S KT  +++G + G SKL K +++ +K + EE    L+++    
Sbjct: 337 APSSKTSYVVLGSDAGPSKLRKIKEMNIKTIGEEGLFELIRRLPAN 382


>gi|296083902|emb|CBI24290.3| unnamed protein product [Vitis vinifera]
          Length = 941

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
                         +  S  +     V +GTL  ++R +A++ + + G  V+  +S+KT+
Sbjct: 163 ERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTN 222

Query: 687 IIIVGDN-PGSKLEKAQQLGVKIMNEEQFLFLL 718
            ++  ++  G+K  KA++LG   + E+    ++
Sbjct: 223 FLLCDEDIGGNKSAKAKELGTAFLTEDGLFDMI 255


>gi|225435884|ref|XP_002265891.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 921

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
                         +  S  +     V +GTL  ++R +A++ + + G  V+  +S+KT+
Sbjct: 151 ERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTN 210

Query: 687 IIIVGDN-PGSKLEKAQQLGVKIMNEEQFLFLL 718
            ++  ++  G+K  KA++LG   + E+    ++
Sbjct: 211 FLLCDEDIGGNKSAKAKELGTAFLTEDGLFDMI 243


>gi|171689552|ref|XP_001909716.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944738|emb|CAP70849.1| unnamed protein product [Podospora anserina S mat+]
          Length = 912

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKL 698
            +     +  K  VFTG L+ I R   Q  V + G  V+   S KTD +++GD+ G SKL
Sbjct: 259 PEGEEDCLVGKTFVFTGLLKTISREDGQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKL 318

Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719
            K ++  +K ++EE   +L++
Sbjct: 319 RKIKEHNIKTIDEEGLFYLIK 339


>gi|22326948|ref|NP_680188.1| AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA
           clamp loader/ nucleoside-triphosphatase/ nucleotide
           binding [Arabidopsis thaliana]
 gi|13374860|emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis
           thaliana]
 gi|48958527|gb|AAT47816.1| At5g22010 [Arabidopsis thaliana]
 gi|332005585|gb|AED92968.1| replication factor C1 [Arabidopsis thaliana]
          Length = 956

 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN- 693
                 +     +     V +GTL  ++R +A++ + + G  ++  +S+KT  ++  ++ 
Sbjct: 195 GEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTTYLLCDEDI 254

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            G K EKA++LG K + E+    +++      +
Sbjct: 255 GGRKSEKAKELGTKFLTEDGLFDIIRSSKPVKK 287


>gi|189200012|ref|XP_001936343.1| replication factor C subunit 1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983442|gb|EDU48930.1| replication factor C subunit 1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1096

 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SK 697
             +   + +     VFTG LQK  R ++QE V + G  V+   S+KT  +++G + G SK
Sbjct: 345 MPQGSDTCLAGLNFVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTSYVVLGSDAGPSK 404

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           L K + + +K ++E+    L+++        D
Sbjct: 405 LAKIRDMNIKTIDEDGLTQLIEKLTAAGNKGD 436


>gi|328770979|gb|EGF81020.1| hypothetical protein BATDEDRAFT_653 [Batrachochytrium dendrobatidis
           JAM81]
          Length = 696

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKA 701
             + +     VFTG +    R  A + V + G  V    S KT  ++VG++PG SKL+K 
Sbjct: 17  ADNCLTGLAFVFTGEMPSFSREDATDLVKRYGGRVVGAPSSKTSYVVVGEDPGESKLKKV 76

Query: 702 QQLGVKIMNEEQFLFLL 718
           + L +K+++E+ F+ L+
Sbjct: 77  RDLKLKVLDEDSFVNLI 93


>gi|71018701|ref|XP_759581.1| hypothetical protein UM03434.1 [Ustilago maydis 521]
 gi|46099339|gb|EAK84572.1| hypothetical protein UM03434.1 [Ustilago maydis 521]
          Length = 950

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                A        +P      +   + +    LVFTG L+ I R +A +   + GA ++
Sbjct: 237 NWREMAARRAAGPANPGSKAIPQGKPNCLTGLTLVFTGELESISRDEASDLAKRYGARIT 296

Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +  S KT  +IVG+  G  KL+  ++  +K +NE++FL L++    
Sbjct: 297 SAPSSKTSYVIVGEGAGPKKLDLIRKNNIKTLNEDEFLDLIRTRGA 342


>gi|34764321|ref|ZP_00145153.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27885903|gb|EAA23247.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 68

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 41/65 (63%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K  +FTGTL+   R + +E + +LG    + +S+  D +IVG+  GSKL+KAQ+  +K +
Sbjct: 4   KNFLFTGTLKHFTREQIKEEIEKLGGKNLSSVSKNLDYLIVGEKAGSKLKKAQRSTIKNI 63

Query: 710 NEEQF 714
            EE+ 
Sbjct: 64  TEEEL 68


>gi|205364119|gb|ACI04517.1| replication factor C large subunit [Hydra magnipapillata]
          Length = 1116

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +     V TG L+   R +  + + + G  V+  +S KT  IIVG +PG 
Sbjct: 350 KELPKGSDNCLAGLSFVITGVLEAFDRDEIADSIKRYGGKVTTSVSGKTSYIIVGRDPGE 409

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +K+EKA +   K ++E+ F+ L+  ++ 
Sbjct: 410 TKIEKALKHKTKQIDEDGFIDLICSHSK 437


>gi|194746572|ref|XP_001955754.1| GF18917 [Drosophila ananassae]
 gi|190628791|gb|EDV44315.1| GF18917 [Drosophila ananassae]
          Length = 982

 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++P      K   + +     + TG L+ ++R +A+  + + G  V  ++ +K   ++V
Sbjct: 234 CLNPGSKEIPKGTPNCLSGITFLVTGVLESMEREEAESVIKEYGGRVMTVVGKKLQYLVV 293

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           G+  G  KL  A++L + I++E+    L+++ +
Sbjct: 294 GEEAGPKKLAVAEELNIPILSEDGLFDLIREKS 326


>gi|331246527|ref|XP_003335896.1| replication factor C subunit 1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309314886|gb|EFP91477.1| replication factor C subunit 1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1470

 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P      +   + +     VFTG L+ + R  AQ    + G  V+   S KT  +++G 
Sbjct: 49  APGSKPIPEGAENCLAGLTFVFTGELESLSREDAQTLAKRYGGRVTTSPSSKTSFVVLGS 108

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT------TLRIHDDD 731
           + G  KLE  ++  +K + E++FL L+    +      TL+  +D+
Sbjct: 109 DAGPKKLEMIKKHKIKTITEDEFLNLIGSKPSGEVDAKTLKKQEDE 154


>gi|313247250|emb|CBY15541.1| unnamed protein product [Oikopleura dioica]
          Length = 432

 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P          + +E    V TG  + + R + +  + + G   +  +S KT  +IVG+
Sbjct: 181 NPGSKEIPNGADNCLEGLTFVATGNGESLGRDEMKSLIQRYGGKFTTSVSGKTSYVIVGE 240

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            PG SK++KA++  VK+++E+  L L++    
Sbjct: 241 EPGESKIKKAKEKAVKLVDEDFILELIRSKPA 272


>gi|313608258|gb|EFR84263.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL F2-208]
          Length = 70

 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 40/66 (60%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L+K+ R+ A+  +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  + 
Sbjct: 1   KLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIE 60

Query: 717 LLQQYN 722
            L    
Sbjct: 61  YLPDEG 66


>gi|170106533|ref|XP_001884478.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164640824|gb|EDR05088.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 950

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
                     +     VFTG L    R +A +   + G  V    S KTD +++GDN G 
Sbjct: 278 KEVPDGAPDCLAGLSFVFTGELSSFSRDEAIDLAKRFGGRVVLQPSSKTDYVVLGDNAGP 337

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
           SK+   ++  +  ++E++FL L+     + ++ D 
Sbjct: 338 SKIAAIKKHKINTLSEDEFLGLIATRKGSGKLDDK 372


>gi|221101530|ref|XP_002169845.1| PREDICTED: similar to replication factor C large subunit, partial
           [Hydra magnipapillata]
          Length = 932

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +     V TG L+   R +  + + + G  V+  +S KT  IIVG +PG 
Sbjct: 351 KELPKGSDNCLAGLSFVITGVLEAFDRDEIADSIKRYGGKVTTSVSGKTSYIIVGRDPGE 410

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +K+EKA +   K ++E+ F+ L+  ++ 
Sbjct: 411 TKIEKALKHKTKQIDEDGFIDLICSHSK 438


>gi|312371248|gb|EFR19483.1| hypothetical protein AND_22348 [Anopheles darlingi]
          Length = 1111

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
             +P      +   + +E  + V TG L+ ++R +  + +  LG  V   +S+K   ++V
Sbjct: 265 PANPGSKAIPEGKPNCLEGLQFVITGVLESMERDECAQVIKDLGGKVVGAVSKKVTHMVV 324

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           GD+ G  KL +A+ LG+  ++E+    L+++ +   +
Sbjct: 325 GDDCGPKKLSQAEDLGIPTLSEDALFDLIREKSGQAK 361


>gi|158302275|ref|XP_321857.4| AGAP001290-PA [Anopheles gambiae str. PEST]
 gi|157012871|gb|EAA01207.5| AGAP001290-PA [Anopheles gambiae str. PEST]
          Length = 1016

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
             +P      +   + ++  + V TG L+ ++R +  + +  LG  V   +S+K   ++V
Sbjct: 225 PANPGSKEIPEGKPNCLQGLQFVITGVLESMERDECAQVIKDLGGKVVGAVSKKCTHMVV 284

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           GD+ G  K+ +A++LG+  ++E++ L L++
Sbjct: 285 GDDAGPKKIAQAEELGIVTLSEDELLDLIR 314


>gi|78779078|ref|YP_397190.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9312]
 gi|78712577|gb|ABB49754.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9312]
          Length = 249

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 110/306 (35%), Gaps = 64/306 (20%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
           E+ I ++DD Y +    +I D ++D L++                             N 
Sbjct: 6   EERIEWYDDNY-RNGNALISDKQFDQLEKNLLR----------------------TNPNC 42

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
             FK    +   SLEK    + + +F+  +               +EPKIDG  + ++Y 
Sbjct: 43  DYFKKRSKLVLPSLEK----DSIDRFLEGLL--------ADTRLLIEPKIDGCAVALQYR 90

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            G    A  R     G DV+  +  +  IP  L L    +++VRGE+Y S          
Sbjct: 91  DGILEKAISR----KGTDVTTKLIKVQDIPNHLPLR--GVLQVRGELYASN--------- 135

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
                 +     +  ASG LR          L+F    +  ++      QYE  + +  L
Sbjct: 136 ------QTPNISQRMASGYLRAKEGFP--ERLSFCAFQILNSTL----NQYESKKSLSEL 183

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSPR 323
           GF +   +   N    +  +  +    +    Y  DG+V K++   LQ    +     P 
Sbjct: 184 GFTIPQDIS-CNFTSQVQVFRKQWIEGKLFREYPTDGIVVKINSRKLQLIREKSNLDYPY 242

Query: 324 WMISHK 329
           W ++ K
Sbjct: 243 WQVAIK 248


>gi|322778907|gb|EFZ09323.1| hypothetical protein SINV_15414 [Solenopsis invicta]
          Length = 1027

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P         ++ +     + TG L  ++R++A++ + +        +S K + +IVGD
Sbjct: 301 NPGSKEIPTGATNCLAGISFLITGVLDSLERNEAEDLIRKYSGRTVNTVSSKVNYVIVGD 360

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             G +KL KA  LG+K ++E+  L +++
Sbjct: 361 EAGPAKLTKANSLGIKQISEDDLLEMIR 388


>gi|315282736|ref|ZP_07871076.1| DNA ligase, NAD-dependent [Listeria marthii FSL S4-120]
 gi|313613623|gb|EFR87427.1| DNA ligase, NAD-dependent [Listeria marthii FSL S4-120]
          Length = 69

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 40/65 (61%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+K+ R+ A+  +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  
Sbjct: 1   LEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEY 60

Query: 718 LQQYN 722
           L    
Sbjct: 61  LPDEG 65


>gi|150864993|ref|XP_001384033.2| hypothetical protein PICST_35815 [Scheffersomyces stipitis CBS
           6054]
 gi|149386249|gb|ABN66004.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 764

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 7/130 (5%)

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
             +  LS I    + + +      F+          A     +    +  +   + +   
Sbjct: 2   TAEQVLSTIPDADLPEDVEDKKFNFFAKK------AADASTGTGESVQIPEAQPNCLSGL 55

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
            +VFTG L ++ R  ++    + GA V+  +S KT ++++GD  G SK++K + L +K +
Sbjct: 56  TIVFTGVLPRLDRDTSENLAKRYGAKVTKSISGKTSLVVIGDEAGPSKIKKIKSLHIKAI 115

Query: 710 NEEQFLFLLQ 719
           NE+ F+ LLQ
Sbjct: 116 NEDGFIQLLQ 125


>gi|126660216|ref|ZP_01731333.1| DNA ligase [Cyanothece sp. CCY0110]
 gi|126618518|gb|EAZ89270.1| DNA ligase [Cyanothece sp. CCY0110]
          Length = 524

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 47/78 (60%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
            + KKLV  G+L  + R  A+  V Q G  +++  S KTD ++VG NPG KL+KAQ+LG+
Sbjct: 442 FDGKKLVVVGSLDSMNRETAKSLVQQAGGTLTSSPSSKTDYVVVGKNPGDKLKKAQKLGI 501

Query: 707 KIMNEEQFLFLLQQYNTT 724
             ++E QFL  L     T
Sbjct: 502 SQLSENQFLEALATVGIT 519


>gi|237800438|ref|ZP_04588899.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|237806426|ref|ZP_04593130.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023297|gb|EGI03354.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331027539|gb|EGI07594.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 70

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 41/69 (59%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L 
Sbjct: 1   SLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLK 60

Query: 717 LLQQYNTTL 725
            L +    +
Sbjct: 61  RLTELGVAV 69


>gi|195396041|ref|XP_002056641.1| GJ11052 [Drosophila virilis]
 gi|194143350|gb|EDW59753.1| GJ11052 [Drosophila virilis]
          Length = 964

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++P      K     ++    + TG L+ ++R +A   +   G  V  ++ +K + ++V
Sbjct: 208 CLNPGSKEIPKGAPDCLKGLTFLVTGILESMERDEAASVIKGFGGRVMTVVGKKLNYLVV 267

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           G+  G  KL +A++  V I++E+    L+++ +
Sbjct: 268 GEEAGPKKLAQAEEHNVTIISEDGLFDLIRERS 300


>gi|290991775|ref|XP_002678510.1| replication factor C large subunit [Naegleria gruberi]
 gi|284092123|gb|EFC45766.1| replication factor C large subunit [Naegleria gruberi]
          Length = 994

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +N  +    +   K  +          ++ +++K  V TG ++ + R + ++ + Q G V
Sbjct: 249 RNFYDKTQHQNQQKAKNHGCKTVPVGKANCLKDKSFVITGQMESLDRDEMEDLIKQYGGV 308

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           +   +S +T  ++VGD PG SK++K ++   K ++E+  L ++ + N + +   D+
Sbjct: 309 IRGNVSGRTSFVVVGDGPGESKMKKVREHKTKQLSEDDLLEMIAKSNPSGKDSMDE 364


>gi|50547051|ref|XP_500995.1| YALI0B16918p [Yarrowia lipolytica]
 gi|49646861|emb|CAG83248.1| YALI0B16918p [Yarrowia lipolytica]
          Length = 952

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 1/105 (0%)

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +    ++    A             +   + +     VFTGT+  + R + Q  V + G 
Sbjct: 224 FNFREHLAKNTATGSGEGGGAVELPEAAENCLVGLTFVFTGTMPNLSREEGQAAVKKYGG 283

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            V++ +S KT+ +++G++ G  K+E+ ++L  K ++E  FL LL+
Sbjct: 284 KVTSSISGKTNCVVLGEDAGPKKIEQIKKLRTKALDEAGFLELLR 328


>gi|302923420|ref|XP_003053672.1| hypothetical protein NECHADRAFT_30719 [Nectria haematococca mpVI
           77-13-4]
 gi|256734613|gb|EEU47959.1| hypothetical protein NECHADRAFT_30719 [Nectria haematococca mpVI
           77-13-4]
          Length = 1042

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +     +     VFTG LQ I R + Q  V + G  V    S KT  +++GD+ G 
Sbjct: 305 VELPEGEDECLSGLSFVFTGVLQTIGRDEGQALVKRYGGKVVGQPSSKTSFVVLGDDAGP 364

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           SKL K +  G+K ++E     L+++   
Sbjct: 365 SKLAKIKSHGIKTIDENGLFDLIRKLPA 392


>gi|328863808|gb|EGG12907.1| hypothetical protein MELLADRAFT_46497 [Melampsora larici-populina
           98AG31]
          Length = 937

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 1/100 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +      +P      +   + +     VFTG L  + R +AQ    + G  V+   S KT
Sbjct: 205 QQRAGPSAPGSKEIPEGQPNCLAGLTFVFTGELDSLSREEAQTLCKRYGGRVTTSPSSKT 264

Query: 686 DIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             +++G + G+ KLE   +  +  + E++FL L+   + +
Sbjct: 265 TYVVLGSDAGAKKLEVIAKHKITTLTEDEFLELIGTRSAS 304


>gi|241111852|ref|XP_002399407.1| replication factor C large subunit, putative [Ixodes scapularis]
 gi|215492969|gb|EEC02610.1| replication factor C large subunit, putative [Ixodes scapularis]
          Length = 706

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKA 701
               ++   LV TG L+ I+R   +  + + GA V+  +SR T  ++ G + G +KL KA
Sbjct: 2   SPGCLKGVTLVITGVLECIERDDTRALLERCGAKVTQSVSRNTTYLVAGRDSGPAKLRKA 61

Query: 702 QQLGVKIMNEEQFLFLLQ 719
           ++  VKI++E+ F  L++
Sbjct: 62  EECKVKILDEDGFFELIE 79


>gi|46105398|ref|XP_380503.1| hypothetical protein FG00327.1 [Gibberella zeae PH-1]
          Length = 1049

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +     +     VFTG LQ I R   Q  V + G  V    S KT  +++GD+ G 
Sbjct: 312 VELPEGEEECLSGLSFVFTGVLQTISRDDGQALVKRYGGKVVGQPSSKTSFVVLGDDAGP 371

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           SKL K Q L +K ++E     L+++   
Sbjct: 372 SKLAKIQSLSIKTIDENGLFDLIRKLPA 399


>gi|16329814|ref|NP_440542.1| DNA ligase [Synechocystis sp. PCC 6803]
 gi|1652299|dbj|BAA17222.1| DNA ligase [Synechocystis sp. PCC 6803]
          Length = 562

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 52/94 (55%)

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           VE        +     +  +  +  KK+V  GTL  + R +A+  +  +GA  +   S K
Sbjct: 467 VETETITDPVATVPSNEEGAHPLAEKKVVILGTLNAMNREEAKTRLQNVGAECTGTPSGK 526

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           TD I+VG  PG+KL+KAQ+LG+  ++E QFL LL
Sbjct: 527 TDYIVVGKAPGAKLKKAQKLGIAQLSEAQFLELL 560


>gi|50292909|ref|XP_448887.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528200|emb|CAG61857.1| unnamed protein product [Candida glabrata]
          Length = 854

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  + +              +   + +    +VFTGTL  I+R  A+    + GA 
Sbjct: 122 ATFDFRQSKQQSNDSGMAMDVDIPEGQDNCLLGLTIVFTGTLPSIERGAAENLAKRYGAR 181

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT ++++GD  G  KLEK + LG+K ++EE F  L+ 
Sbjct: 182 VTKSISKKTSVVVLGDEAGPKKLEKIKDLGIKAIDEEGFKQLIA 225


>gi|119481305|ref|XP_001260681.1| chromosome transmission fidelity factor [Neosartorya fischeri NRRL
           181]
 gi|119408835|gb|EAW18784.1| chromosome transmission fidelity factor [Neosartorya fischeri NRRL
           181]
          Length = 1064

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 7/139 (5%)

Query: 589 AHNNDDWLSLIRVPLVGDII------AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
           A    D      +  + D I      +       +   N  A +     V+         
Sbjct: 269 AATKKDEPESKEIQDIFDSIPTIKPPSPPPPSGEKAKFNFAATQRSRDPVAGGTAELPVG 328

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKA 701
             + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G  KL+K 
Sbjct: 329 AENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTTAPSSKTSYVVLGSDAGPNKLKKI 388

Query: 702 QQLGVKIMNEEQFLFLLQQ 720
           Q+  ++ +NEE    L+++
Sbjct: 389 QEHNLRTINEEGLFELIRR 407


>gi|67467166|ref|XP_649703.1| Activator 1 140 kDa subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56466194|gb|EAL44317.1| Activator 1 140 kDa subunit, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 718

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702
            +E + K  V TG   ++ R + +EY+   G  V+  +S KT ++I G+  G SK+EKA+
Sbjct: 130 ENEFQKKNFVLTGVYDELDRDEMKEYIISFGGNVATSISGKTAVLIAGEEAGPSKIEKAK 189

Query: 703 QLGVKIMNEEQFLFLLQQ 720
           + G+ I +E+     ++Q
Sbjct: 190 EKGIPIWSEDDVFNYVKQ 207


>gi|303283302|ref|XP_003060942.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457293|gb|EEH54592.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 949

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702
              +E    V +G L  ++R +A++++ + G  V++ +S KT  ++VG + G SK  KA+
Sbjct: 221 DGCLEGCTFVVSGVLDSLERDEAEDFIKRHGGKVTSAVSGKTTYLLVGMDCGKSKYAKAK 280

Query: 703 QLGVKIMNEEQFLFLLQ 719
            +G  +M+E+    +++
Sbjct: 281 SVGTPLMDEDGLFAMVE 297


>gi|164658055|ref|XP_001730153.1| hypothetical protein MGL_2535 [Malassezia globosa CBS 7966]
 gi|159104048|gb|EDP42939.1| hypothetical protein MGL_2535 [Malassezia globosa CBS 7966]
          Length = 850

 Score = 97.0 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
               A       V+P      +   + +    LVFTG L  I R  A +   + GA V+ 
Sbjct: 132 WKQMAQRRAAGPVAPGSKAIPEGAPNCLAGLTLVFTGELSSISREDAIDLAKRYGAKVTT 191

Query: 680 ILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             S KT  +++GD  G+ KLE  Q+  +K ++E+ FL L+ +   
Sbjct: 192 APSSKTSYVVLGDGAGAKKLETIQKNKLKTVDEDGFLALIAERGA 236


>gi|156065801|ref|XP_001598822.1| hypothetical protein SS1G_00911 [Sclerotinia sclerotiorum 1980]
 gi|154691770|gb|EDN91508.1| hypothetical protein SS1G_00911 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1047

 Score = 97.0 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +   + +     VFTG L  I R +  E V + G  ++   S KT+ +++G + G 
Sbjct: 297 AEIPEGAENCLAGLTFVFTGVLNTISRDEGIELVKKYGGKITGAPSSKTNYVVLGSDAGP 356

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKL K ++L +K ++EE    +++
Sbjct: 357 SKLRKIRELKIKSVDEEGLFAIIK 380


>gi|195111811|ref|XP_002000470.1| GI10247 [Drosophila mojavensis]
 gi|193917064|gb|EDW15931.1| GI10247 [Drosophila mojavensis]
          Length = 1026

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++P      K     ++    + TG L+ ++R +A   +   G  V  ++ +K + ++V
Sbjct: 240 CLNPGSKEIPKGSPDCLKGLTFLVTGILESMERDEAASVIKGFGGRVMTVVGKKLNYLVV 299

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLL-QQYNTTLRIHDDD 731
           G+  G  KL +A++  V I++E+    L+ ++   T++    +
Sbjct: 300 GEEAGPKKLAQAEEFHVTILSEDGLFDLIREKSGETVKAKSSE 342


>gi|146322944|ref|XP_755554.2| DNA replication factor C subunit Rfc1 [Aspergillus fumigatus Af293]
 gi|129558538|gb|EAL93516.2| DNA replication factor C subunit Rfc1, putative [Aspergillus
           fumigatus Af293]
 gi|159129617|gb|EDP54731.1| DNA replication factor C subunit Rfc1, putative [Aspergillus
           fumigatus A1163]
          Length = 1085

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N  A +     V+           + +     VFTG L  + R + Q  V + G  
Sbjct: 306 KAKFNFAATQRSRDPVAGGTAELPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGK 365

Query: 677 VSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           V+   S KT  +++G + G  KL+K Q+  ++ +NE+    L+++    
Sbjct: 366 VTTAPSSKTSYVVLGSDAGPNKLKKIQEHNLRTINEQGLFELIRRLPPN 414


>gi|195054401|ref|XP_001994113.1| GH23049 [Drosophila grimshawi]
 gi|193895983|gb|EDV94849.1| GH23049 [Drosophila grimshawi]
          Length = 1008

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++P      K     ++    + TG L+ ++R +A   + + G  +  ++ +K + ++V
Sbjct: 212 CLNPGSKEIPKGAPDCLKGLTFLVTGILESMERDEAASVIKEFGGRIMTVVGKKLNYLVV 271

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           G+  G  KL +A++  V I++E+    L+++ +   +
Sbjct: 272 GEEAGPKKLAQAEEHNVSILSEDALFELIRERSGETK 308


>gi|172038660|ref|YP_001805161.1| hypothetical protein cce_3747 [Cyanothece sp. ATCC 51142]
 gi|171700114|gb|ACB53095.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 534

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 48/78 (61%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E KKLV  G+L  + R  A+  V Q G  +++  S +T  ++VG NPG KL+KAQ+LG+
Sbjct: 452 LEGKKLVVVGSLNSMNREIAKSLVQQAGGTLTSSPSSRTHYVVVGKNPGDKLKKAQKLGI 511

Query: 707 KIMNEEQFLFLLQQYNTT 724
             ++E+QFL  L     T
Sbjct: 512 AQLSEDQFLEALAATGIT 529


>gi|167390687|ref|XP_001739454.1| replication factor C large subunit [Entamoeba dispar SAW760]
 gi|165896833|gb|EDR24155.1| replication factor C large subunit, putative [Entamoeba dispar
           SAW760]
          Length = 576

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 2/116 (1%)

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
               ++    +    +    +    ++ P  G       +E E K  V TG   ++ R +
Sbjct: 122 PKPIESKKTHFNAFSHDTTAKNKGSKIVPR-GVGNFFGENEFEKKNFVLTGVYDELDRDE 180

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +EY+T  G  V+  +S KT ++I G+ PG SK+EKA++ G+ I NE+     +++
Sbjct: 181 MKEYITNFGGNVATSISGKTGVLIAGEEPGPSKIEKAKEKGIAIWNEDDVFDYVKK 236


>gi|67922509|ref|ZP_00516018.1| BRCT [Crocosphaera watsonii WH 8501]
 gi|67855680|gb|EAM50930.1| BRCT [Crocosphaera watsonii WH 8501]
          Length = 490

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 54/99 (54%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           E   +       + +      +++KKLV  G+L  + R KA+  V Q+G  +++  S KT
Sbjct: 389 EVKSESAEVEESKEQVKSELVLKSKKLVIVGSLDSMNREKAKSLVQQVGGNLTSSPSSKT 448

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           + ++VG NPG KL+KA++ G+  ++E QFL  L     T
Sbjct: 449 NYVVVGKNPGDKLKKAKKFGIAQLSETQFLEALAAAGVT 487


>gi|319411789|emb|CBQ73832.1| related to replication factor C protein [Sporisorium reilianum]
          Length = 954

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                A        +P      +   + +    LVFTG L  I R +A +   + GA ++
Sbjct: 243 NWREMAARRAAGPSNPGSKDIPQGAPNCLAGLTLVFTGELTSISRDEATDLAKRYGARIT 302

Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
              S KT  +IVG+  G  KLE  ++  ++ ++E+ FL L++    
Sbjct: 303 GAPSSKTSYVIVGEGAGPKKLESIKKNKIETLDEDAFLDLIRTRGA 348


>gi|300856782|ref|YP_003781766.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii
           DSM 13528]
 gi|300436897|gb|ADK16664.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii
           DSM 13528]
          Length = 436

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 19/138 (13%)

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA     F  N  N   +  +  +    I       S+   NK +VFTG L+ + R +A 
Sbjct: 198 IANTKNSFTNNKFNTVKISEIKPDNDNIID-----TSNPFYNKNVVFTGELKSLGRKEAM 252

Query: 668 EYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQLG-----VKIMNEEQ 713
           + V  LG  + + +S+KTD +IVG         +   SK EKA +L      +KI+NE +
Sbjct: 253 QKVVNLGGTLKSGVSKKTDYLIVGNQDKSLVGENGISSKEEKAAELNENGSSIKILNESE 312

Query: 714 FLFLLQQYNTTLRIHDDD 731
           FL L++  N      D +
Sbjct: 313 FLELIKTPNKENSFDDSN 330


>gi|207110333|ref|ZP_03244495.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 112

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
           E L HF S+DA NI+GLG + ++  F+ +     I    D++ L+        K      
Sbjct: 1   ESLIHFASKDALNIQGLGDKVIEQLFEEK----LIFNALDLYALKLEDLMRLDK------ 50

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
           F      NL D+I K +N  L R I +LGI H+G   +++LA+Y L+    ++ 
Sbjct: 51  FKIKKAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLARYGLNVLEKSEA 104


>gi|307152927|ref|YP_003888311.1| BRCT domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306983155|gb|ADN15036.1| BRCT domain protein [Cyanothece sp. PCC 7822]
          Length = 753

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRH 664
           A+ + +      N    E L + V+      E   ++     ++ KK V  GTL K+ R 
Sbjct: 633 AETVTDSKTEEENKSEPEKLAQPVAEDTQEIEDKKATPPQNLLKGKKFVIVGTLSKLNRD 692

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           + +  + + G  +++  S KTD I+VG  PG+K +KAQ+     ++E QF+ LL+    +
Sbjct: 693 QVKSIIQEAGGQLTSSPSSKTDYILVGKAPGTKAKKAQKNRAATLSELQFIELLKNSGIS 752

Query: 725 L 725
           +
Sbjct: 753 I 753


>gi|238574191|ref|XP_002387514.1| hypothetical protein MPER_13721 [Moniliophthora perniciosa FA553]
 gi|215443056|gb|EEB88444.1| hypothetical protein MPER_13721 [Moniliophthora perniciosa FA553]
          Length = 108

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
               VFTG L    R +A +   + G  V    S KTD +I+GDN G SKL   ++ G+ 
Sbjct: 2   GLSFVFTGELSAFSREEAVDIAKRFGGRVVGQPSSKTDYVILGDNAGPSKLNAIKKHGLH 61

Query: 708 IMNEEQFLFLLQQYNTTLRI 727
            +NE++FL L+     + ++
Sbjct: 62  TLNEDEFLNLIATRKGSGKL 81


>gi|242216981|ref|XP_002474294.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726586|gb|EED80531.1| predicted protein [Postia placenta Mad-698-R]
          Length = 731

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
              +      +     VFTG L  + R +A E   + G  V+   S KT  +++G + G 
Sbjct: 107 PIPQAAAPDCLAGLTFVFTGELSSLSRDEAIELAKRHGGRVTGQPSSKTSFVVLGSDAGP 166

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           SKL   ++  +  ++E+ FL L+       R+ D +
Sbjct: 167 SKLAAIKKNNLTTLDEDSFLQLI-----ATRVPDPN 197


>gi|241951560|ref|XP_002418502.1| replication factor C subunit, putative [Candida dubliniensis CD36]
 gi|223641841|emb|CAX43803.1| replication factor C subunit, putative [Candida dubliniensis CD36]
          Length = 886

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N  A+ A   E + +     +   + +    +VFTG +  + R  A++   Q GA 
Sbjct: 158 AKKVNFFALNAARNETTQTAVDLPEAQPNCLMGLTIVFTGQMPNLDRGTAEQTAKQYGAK 217

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S KT ++++G + G SK++K +QL +K ++E  F+ LL+
Sbjct: 218 VTKSISGKTSLVVLGADAGPSKVQKIKQLKIKAIDEAGFIKLLE 261


>gi|242209061|ref|XP_002470379.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730549|gb|EED84404.1| predicted protein [Postia placenta Mad-698-R]
          Length = 697

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
              +      +     VFTG L  + R +A E   + G  V+   S KT  +++G + G 
Sbjct: 5   PIPQAAAPDCLTGLTFVFTGELSSLSRDEAIELAKRHGGRVTGQPSSKTSFVVLGSDAGP 64

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           SKL   ++  +  ++E+ FL L+       R+ D +
Sbjct: 65  SKLAAIKKNNLTTLDEDSFLQLI-----ATRVPDPN 95


>gi|255078488|ref|XP_002502824.1| predicted protein [Micromonas sp. RCC299]
 gi|226518090|gb|ACO64082.1| predicted protein [Micromonas sp. RCC299]
          Length = 917

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +  +    +  +  +E   +V +G L  ++R +A++YV + G  V++ +S KT  ++VG 
Sbjct: 193 NKGVKIAPRGPNDCLEGVTVVVSGVLDSLEREEAEDYVKRHGGKVTSTVSGKTTYLLVGM 252

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + G SK  KA+Q G  +++E+    ++ 
Sbjct: 253 DCGKSKYNKAKQHGTTLIDEDGLFAMVA 280


>gi|307166495|gb|EFN60580.1| Replication factor C subunit 1 [Camponotus floridanus]
          Length = 935

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P          + +     + TG    ++R +A+  + +        +S K + IIVGD
Sbjct: 219 NPGSKEIPTGAPNCLAGVSFLLTGVFDSLERDEAEHLIRKYSGRTVNTVSGKVNYIIVGD 278

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             G +KL KA  LG+K ++E+  L +++
Sbjct: 279 EAGPAKLAKANSLGIKQISEDDLLEMIR 306


>gi|300706363|ref|XP_002995454.1| hypothetical protein NCER_101643 [Nosema ceranae BRL01]
 gi|239604566|gb|EEQ81783.1| hypothetical protein NCER_101643 [Nosema ceranae BRL01]
          Length = 598

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKA 701
           +    +NK  VFTG L  + R  A+  V  LG  V+   S+KTD ++VG  PG  KL+KA
Sbjct: 1   MKDFFKNKTFVFTGEL-TLDREYAKSKVILLGGRVTIAPSKKTDFLVVGAEPGPVKLKKA 59

Query: 702 QQLGVKIMNEEQFLFLLQQ 720
           Q L +KI+ E++F   L +
Sbjct: 60  QDLNIKIIYEQEFTTNLNE 78


>gi|169865629|ref|XP_001839413.1| purine nucleotide binding protein [Coprinopsis cinerea
           okayama7#130]
 gi|116499532|gb|EAU82427.1| purine nucleotide binding protein [Coprinopsis cinerea
           okayama7#130]
          Length = 920

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
           P            +     VFTG L    R +A +   + G  V    S KTD +++G++
Sbjct: 222 PGSKPIPDGAPDALAGLSFVFTGELTAFSRDEAVDLAKRFGGRVVGQPSSKTDYVVLGED 281

Query: 694 PG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  KLE  ++  +  ++E+ FL L+ 
Sbjct: 282 AGPKKLEAIKKHKLNTLDEDGFLNLIA 308


>gi|238882346|gb|EEQ45984.1| activator 1 95 kDa subunit [Candida albicans WO-1]
          Length = 890

 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
            + + +L     + ++         A    + L+ I    + +I     V F+       
Sbjct: 116 KKTSSTLKSTAATKKSKVPAGGESTADTAQEILATIPDAELPEIDPTKKVNFF------- 168

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           A+ A   E + +     +   + +    +VFTG +  + R  A++   Q GA V+  +S 
Sbjct: 169 ALNAARNETTQTSVELPEAQPNCLTGLTIVFTGQMPNLDRGTAEQTAKQYGAKVTKSISG 228

Query: 684 KTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           KT ++++G + G SK++K +Q  +K ++E  F+ LL+
Sbjct: 229 KTSLVVLGTDAGPSKVQKIKQHKIKAIDEAGFIKLLE 265


>gi|307197038|gb|EFN78410.1| Replication factor C subunit 1 [Harpegnathos saltator]
          Length = 1045

 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P          + +     + TG  + ++R++ ++ +   G  +   +S K + I+VGD
Sbjct: 319 NPGSKTIPTGAKNCLAGLTFLTTGVFESLERNEVEDLIKNYGGRIVNSVSSKVNYIMVGD 378

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             G +KL KA  L +K + E+  L +++
Sbjct: 379 EAGPAKLAKANTLSIKQITEDDLLEMIR 406


>gi|320586272|gb|EFW98951.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
          Length = 1507

 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +       +   + +  +  VFTG LQ I R + Q  V + G  V+   SR T  +++GD
Sbjct: 740 NAGAVELPEGAPNCLVGQTFVFTGLLQTISRDEGQALVKRYGGKVTTAPSRNTSWVVLGD 799

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + G SKL K  QL ++ ++E     L+++   
Sbjct: 800 DAGPSKLAKISQLSLRTIDENGLFELIKRLPA 831


>gi|326437790|gb|EGD83360.1| hypothetical protein PTSG_03969 [Salpingoeca sp. ATCC 50818]
          Length = 1046

 Score = 93.9 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 626 EALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           + +     P++G+        + +   K V TG L  I+R  A+  +   G  V   +S 
Sbjct: 315 QRMQNLAPPNLGQKPLPSGAQNCLGGLKFVLTGVLDSIERDTAERLIKDHGGAVQKSVSG 374

Query: 684 KTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + + I+ G  PG SK++KA++L + +++E+    L++
Sbjct: 375 RVNYIVAGIEPGPSKMKKAEELKLNVIDEDGLFDLIR 411


>gi|156841650|ref|XP_001644197.1| hypothetical protein Kpol_1059p29 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114834|gb|EDO16339.1| hypothetical protein Kpol_1059p29 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 858

 Score = 93.9 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702
            + +    +VFTG L  ++R  A+    + GA V++ +SRKT ++++G+  G  K+EK +
Sbjct: 145 PNCLLGLTIVFTGVLPTLERGNAETLAKRYGARVTSSISRKTSVVVLGEEAGPKKVEKIK 204

Query: 703 QLGVKIMNEEQFLFLLQ 719
           QLGVK +NE+ F  L+ 
Sbjct: 205 QLGVKAINEDGFKQLIA 221


>gi|291298903|ref|YP_003510181.1| BRCT domain-containing protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290568123|gb|ADD41088.1| BRCT domain protein [Stackebrandtia nassauensis DSM 44728]
          Length = 1024

 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
           EIE K +V TG+   + R +A + +++LGA+V   +S KTD++  GD  G K +KA  LG
Sbjct: 20  EIEGKTIVLTGSFLAMPRSEAGQRLSELGAIVKGTVSSKTDLVFAGDKAGGKADKALALG 79

Query: 706 VKIMNEEQFLFLLQQYNTT 724
           V +  E   + +L     T
Sbjct: 80  VPVHGEAALMAVLSGEAAT 98


>gi|218441295|ref|YP_002379624.1| BRCT domain protein [Cyanothece sp. PCC 7424]
 gi|218174023|gb|ACK72756.1| BRCT domain protein [Cyanothece sp. PCC 7424]
          Length = 783

 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 50/91 (54%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
           +    +      I+ KK V  G++ K+ R + +  + + G  V    + KTD I+VG  P
Sbjct: 693 AEPEKDTKSDHPIQGKKFVILGSIAKLSREQIKSIIQEAGGQVINTPNSKTDYIVVGKAP 752

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GSKL+KAQ++    ++E QF+ LL++   ++
Sbjct: 753 GSKLKKAQKIKATNLSEAQFINLLKENGISI 783


>gi|261195366|ref|XP_002624087.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
           SLH14081]
 gi|239587959|gb|EEQ70602.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
           SLH14081]
          Length = 1065

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +     V+           + +     VFTG L  + R + Q  V + G  V++  S KT
Sbjct: 309 QRSRDPVTSDTKELPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKT 368

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             +++G++ G  KLE  ++ G+K +NE+    L+++    
Sbjct: 369 SYVVLGNDAGPKKLETIRKFGLKTINEDGLFELIRRLPAN 408


>gi|254566547|ref|XP_002490384.1| Replication factor C subunit [Pichia pastoris GS115]
 gi|238030180|emb|CAY68103.1| Replication factor C subunit [Pichia pastoris GS115]
 gi|328350779|emb|CCA37179.1| Replication factor C subunit 1 [Pichia pastoris CBS 7435]
          Length = 908

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702
            + +    +VFTG +  I R +A+E   + GA V+  +S+KT ++++G   G SK++K +
Sbjct: 220 PNCLIGLTMVFTGVMPTIDRTQAEELAKRYGAKVTKSVSKKTSVVVLGSEAGPSKVKKIK 279

Query: 703 QLGVKIMNEEQFLFLLQQYNT 723
              +K ++E+ F+ L++    
Sbjct: 280 DFKIKAIDEDGFITLIKSMPA 300


>gi|327349015|gb|EGE77872.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 1065

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +     V+           + +     VFTG L  + R + Q  V + G  V++  S KT
Sbjct: 309 QRSRDPVTSDTKELPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKT 368

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             +++G++ G  KLE  ++ G+K +NE+    L+++    
Sbjct: 369 SYVVLGNDAGPKKLETIRKFGLKTINEDGLFELIRRLPAN 408


>gi|196009297|ref|XP_002114514.1| hypothetical protein TRIADDRAFT_27705 [Trichoplax adhaerens]
 gi|190583533|gb|EDV23604.1| hypothetical protein TRIADDRAFT_27705 [Trichoplax adhaerens]
          Length = 716

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV--VSAILSRKTDIIIVGDNPG-SKLEK 700
            + +     V TG L  I+R  A E +  LG    VS  +S+KT+ ++VG +PG +KLEK
Sbjct: 3   ENCLSGLVFVITGVLDTIERETAIELIQSLGGKVNVSGSISKKTNYLVVGRDPGLTKLEK 62

Query: 701 AQQLGVKIMNEEQFLFLL 718
           A+    K ++E  F  L+
Sbjct: 63  AKNFSTKQLDENSFYDLI 80


>gi|239610551|gb|EEQ87538.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
           ER-3]
          Length = 1068

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +     V+           + +     VFTG L  + R + Q  V + G  V++  S KT
Sbjct: 312 QRSRDPVTSDTKELPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKT 371

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             +++G++ G  KLE  ++ G+K +NE+    L+++    
Sbjct: 372 SYVVLGNDAGPKKLETIRKFGLKTINEDGLFELIRRLPAN 411


>gi|269860225|ref|XP_002649835.1| replication factor C subunit [Enterocytozoon bieneusi H348]
 gi|220066776|gb|EED44248.1| replication factor C subunit [Enterocytozoon bieneusi H348]
          Length = 570

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
           N   VFTG + K+ R  AQ  + QLG   ++ +S KT  +IVG++PG SKL+KA++LG+ 
Sbjct: 7   NYTFVFTGIM-KMDREHAQFQIRQLGHRSTSAISGKTTHLIVGNDPGVSKLKKAKELGIL 65

Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729
           I+NE +F  LL +   +++  +
Sbjct: 66  ILNETEFEQLLHKMQESVKKRE 87


>gi|330969182|gb|EGH69248.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 68

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
             +      +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSK
Sbjct: 6   EKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSK 65

Query: 698 LEK 700
           L K
Sbjct: 66  LTK 68


>gi|213402719|ref|XP_002172132.1| replication factor C subunit 1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000179|gb|EEB05839.1| replication factor C subunit 1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 930

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 1/100 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +                    +     V TG L+ + R +A + + Q G  V+   S KT
Sbjct: 197 DRPTTMGEQGSKPIPSGQPGCLSGLSFVITGILETLTRQEAGDLIKQYGGKVTGAPSTKT 256

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           D +++GDN G  K+E  +   ++ ++E+  LFL+      
Sbjct: 257 DFVVLGDNAGPRKVETIKTHNIRAIDEDGLLFLISHLPEN 296


>gi|302307023|ref|NP_983504.2| ACR102Wp [Ashbya gossypii ATCC 10895]
 gi|299788800|gb|AAS51328.2| ACR102Wp [Ashbya gossypii ATCC 10895]
          Length = 840

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N     +       +     +   + +    +VFTG L  I R  A+    + GA 
Sbjct: 117 KEGANFGFGGSGESGGDANADDFAQGAPNCLLGLTMVFTGVLPNIDRPAAEALAKKYGAR 176

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S KT ++++GD  G  KLEK +QLG+K ++E  F  L+ 
Sbjct: 177 VTKSISSKTSVVVLGDEAGPKKLEKIRQLGIKAIDENGFRQLIN 220


>gi|190345075|gb|EDK36893.2| hypothetical protein PGUG_00991 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 708

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702
           ++ +    +VFTG L  + R +A+    Q GA V+  +S KT ++++GD  G SK++K +
Sbjct: 9   ANCLSGLTIVFTGVLPNLDRDQAEGLAKQYGAKVTKAISGKTSLVVLGDEAGPSKVQKIK 68

Query: 703 QLGVKIMNEEQFLFLLQQYNT 723
              +K + EE FL LL++   
Sbjct: 69  ANKIKAITEESFLELLRRMPA 89


>gi|146423370|ref|XP_001487614.1| hypothetical protein PGUG_00991 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 708

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702
           ++ +    +VFTG L  + R +A+    Q GA V+  +S KT ++++GD  G SK++K +
Sbjct: 9   ANCLSGLTIVFTGVLPNLDRDQAEGLAKQYGAKVTKAISGKTSLVVLGDEAGPSKVQKIK 68

Query: 703 QLGVKIMNEEQFLFLLQQYNT 723
              +K + EE FL LL++   
Sbjct: 69  ANKIKAITEESFLELLRRMPA 89


>gi|227894105|ref|ZP_04011910.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047]
 gi|227864083|gb|EEJ71504.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047]
          Length = 183

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSK 697
           + + S+    K +  TGTL    R +  + +  +G        + TD +IVG  + P +K
Sbjct: 97  KNDESNAFYGKNVSATGTLTNYTRKEIGQIINNIGGKFQMNPGKSTDYLIVGNLNKPSAK 156

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYN 722
            +KA++LG+ I++E  FL ++  Y+
Sbjct: 157 QKKAEKLGIPILSENDFLSMIAGYD 181


>gi|121715788|ref|XP_001275503.1| chromosome transmission fidelity factor [Aspergillus clavatus NRRL
           1]
 gi|119403660|gb|EAW14077.1| chromosome transmission fidelity factor [Aspergillus clavatus NRRL
           1]
          Length = 1068

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 1/109 (0%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N  A +     V            + +     VFTG L  + R + Q  V + G  
Sbjct: 308 KAKFNFAATQRSRDPVGGGSTELPVGAENCLAGLSFVFTGVLDTLGRDEGQALVKKYGGK 367

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           V+   S KT  +++G + G  KL+  Q   +K +NEE    L+++    
Sbjct: 368 VTTAPSSKTSYVVLGSDAGPKKLKTIQDHKLKTINEEGLFELIRRLPAN 416


>gi|221052935|ref|XP_002257842.1| replication factor C subunit 1 [Plasmodium knowlesi strain H]
 gi|193807674|emb|CAQ38378.1| replication factor C subunit 1, putative [Plasmodium knowlesi
           strain H]
          Length = 900

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 15/99 (15%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSK 697
              + K V TG  +   R + Q  + + G  V + +S KT  +I G+        N G K
Sbjct: 191 PFHSLKFVLTGVFKNFSRDELQSKIKEHGGNVMSAVSSKTHYLIHGEYLEDGRMYNEGKK 250

Query: 698 LEKAQQL------GVKIMNEEQFLFLL-QQYNTTLRIHD 729
            +KA ++       +KI+NEE+FL +L ++ N T +  D
Sbjct: 251 YQKALEVQKMSKCNIKILNEEEFLQMLPEEKNKTSKWED 289


>gi|151945307|gb|EDN63550.1| replication factor C subunit 1 [Saccharomyces cerevisiae YJM789]
          Length = 861

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 7/135 (5%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
           NI A +  D +  + +  V  +   A  +F     N     A   E++  IG   +   +
Sbjct: 103 NITAQDVLDKIPSLDLSNV-HVKENAKFDFKSANSN-----ADPDEIASEIGSFPEGKPN 156

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL 704
            +    +VFTG L  ++R  ++    + GA V+  +S KT ++++GD  G  KLEK +QL
Sbjct: 157 CLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKLEKIKQL 216

Query: 705 GVKIMNEEQFLFLLQ 719
            +K ++EE F  L+ 
Sbjct: 217 KIKAIDEEGFKQLIA 231


>gi|50306785|ref|XP_453368.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642502|emb|CAH00464.1| KLLA0D06897p [Kluyveromyces lactis]
          Length = 835

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-S 696
              +  ++ +    +VFTGTL  + R  ++    + GA V+  +S+ T ++++G+  G  
Sbjct: 143 EIPEGQANCLLGLTIVFTGTLPNLDRSTSENLAKRYGARVTKSISKNTSVVVLGEEAGPK 202

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719
           KLE  ++LG+K ++EE F  L+ 
Sbjct: 203 KLENIKKLGIKAIDEEGFKRLIA 225


>gi|39942248|ref|XP_360661.1| hypothetical protein MGG_03204 [Magnaporthe oryzae 70-15]
 gi|145015808|gb|EDK00298.1| hypothetical protein MGG_03204 [Magnaporthe oryzae 70-15]
          Length = 1084

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKL 698
            +     +     VFTG L+ I R +AQ  V + G  V+   S KT  +++GD+ G SKL
Sbjct: 337 PEGQEDCLSGLTFVFTGLLKTIGREEAQALVKRYGGKVTGAPSGKTSFVVLGDDAGPSKL 396

Query: 699 EKAQQLGVKIMNEEQFLFLL 718
            K +Q  +K ++E     L+
Sbjct: 397 AKIKQHRLKTIDEVGLFHLI 416


>gi|256071069|ref|XP_002571864.1| chromosome transmission fidelity factor [Schistosoma mansoni]
 gi|238657012|emb|CAZ28094.1| chromosome transmission fidelity factor, putative [Schistosoma
           mansoni]
          Length = 1015

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 1/124 (0%)

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           + +  +I    ++ ++  A +A     S       K     ++    + TG L+ I+R  
Sbjct: 170 ESLNDSIEIAVKDRKHFWAYKARDGPRSLGSREIPKGTPDCLKGLNFLITGILECIERED 229

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           A   +   G  V   L +KTD ++VG  PG +K+EKA  L +K + EE    ++++ +  
Sbjct: 230 AANLIQNCGGKVLKTLGKKTDYLVVGREPGAAKIEKANNLKIKQITEEYLFEMIEKSSNV 289

Query: 725 LRIH 728
             +H
Sbjct: 290 PLVH 293


>gi|154281839|ref|XP_001541732.1| hypothetical protein HCAG_03830 [Ajellomyces capsulatus NAm1]
 gi|150411911|gb|EDN07299.1| hypothetical protein HCAG_03830 [Ajellomyces capsulatus NAm1]
          Length = 1066

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +     V+           + +     VFTG L  + R + Q  V + G  V++  S KT
Sbjct: 308 QRSRDPVTSGSKDLPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKT 367

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           + +++G + G  KLE  ++ G+K +NE+    L+++    
Sbjct: 368 NYVVLGSDAGPKKLETIRKFGLKSINEDGLFELIRRLPAN 407


>gi|325093242|gb|EGC46552.1| chromosome transmission fidelity protein [Ajellomyces capsulatus
           H88]
          Length = 1071

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +     V+           + +     VFTG L  + R + Q  V + G  V++  S KT
Sbjct: 313 QRSRDPVTSGSKDLPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKT 372

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           + +++G + G  KLE  ++ G+K +NE+    L+++    
Sbjct: 373 NYVVLGSDAGPKKLETIRKFGLKSINEDGLFELIRRLPAN 412


>gi|123966756|ref|YP_001011837.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9515]
 gi|123201122|gb|ABM72730.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9515]
          Length = 249

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 105/308 (34%), Gaps = 66/308 (21%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ + + D+ Y +    +I D  +D L++             +  +   P         
Sbjct: 5   LEKNVKHLDEQY-RIGNALISDKAFDQLEKNLLRTDPQCDYFNQKNNLLLP--------- 54

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                        SL      E+  +F+  + +        +   +++PKIDG  I I Y
Sbjct: 55  -------------SLAN----ENHIEFLASLLK--------NTRLSIQPKIDGCAIAINY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             GKF  A  R    +G DV++ I+ I  +P  L +      +VRGE+Y           
Sbjct: 90  INGKFNKAITR----TGFDVTSKIKKIKDVPSRLPIQ--RDFQVRGELYSPN-------- 135

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                  +     +   S  L       I +  +F    +          QYE L  ++ 
Sbjct: 136 -------QTPYFSQKITSEFLNNK--KRIAKSFSFCCFQILNGRL----NQYETLNYLKK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER--ARS 321
            GF   +      T   +  +       +    Y  DG+V K++   LQ  L E   ++ 
Sbjct: 183 CGFNTPHSYFTNFTSQ-VELFRKRWLDGKIFSKYPTDGIVIKINSRKLQ-LLRETNLSKY 240

Query: 322 PRWMISHK 329
             W  + K
Sbjct: 241 NEWQYAIK 248


>gi|240275879|gb|EER39392.1| chromosome transmission fidelity factor [Ajellomyces capsulatus
           H143]
          Length = 1071

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +     V+           + +     VFTG L  + R + Q  V + G  V++  S KT
Sbjct: 313 QRSRDPVTSGSKDLPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKT 372

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           + +++G + G  KLE  ++ G+K +NE+    L+++    
Sbjct: 373 NYVVLGSDAGPKKLETIRKFGLKSINEDGLFELIRRLPAN 412


>gi|302853225|ref|XP_002958129.1| DNA replication factor C complex subunit 1 [Volvox carteri f.
           nagariensis]
 gi|300256597|gb|EFJ40860.1| DNA replication factor C complex subunit 1 [Volvox carteri f.
           nagariensis]
          Length = 963

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQ 702
              +  +  V TG L  + R +A++ + + G  V+  +S KT  ++VG N G  K   A+
Sbjct: 216 PDCLTGRTFVITGILDSLMRPEAEDLIKRHGGKVTKSVSGKTAFVVVGHNCGRGKYRDAK 275

Query: 703 QLGVKIMNEEQFLFLLQ 719
           Q   K+++E+    LL+
Sbjct: 276 QHKTKLIDEDGLFALLK 292


>gi|190407527|gb|EDV10794.1| replication factor C subunit 1 [Saccharomyces cerevisiae RM11-1a]
          Length = 861

 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 7/135 (5%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
           NI A +  D +  + +  V  +   A  +F     N     A   E+   IG   +   +
Sbjct: 103 NITAQDVLDKIPSLDLSNV-HVKENAKFDFKSANSN-----ADPDEIVSEIGSFPEGKPN 156

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL 704
            +    +VFTG L  ++R  ++    + GA V+  +S KT ++++GD  G  KLEK +QL
Sbjct: 157 CLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKLEKIKQL 216

Query: 705 GVKIMNEEQFLFLLQ 719
            +K ++EE F  L+ 
Sbjct: 217 KIKAIDEEGFKQLIA 231


>gi|6324791|ref|NP_014860.1| Rfc1p [Saccharomyces cerevisiae S288c]
 gi|584899|sp|P38630|RFC1_YEAST RecName: Full=Replication factor C subunit 1; Short=Replication
           factor C1; AltName: Full=Activator 1 95 kDa subunit;
           AltName: Full=Cell division control protein 44
 gi|437274|gb|AAC48916.1| Cdc44p [Saccharomyces cerevisiae]
 gi|841462|gb|AAC49060.1| Rfc1p [Saccharomyces cerevisiae]
 gi|1050769|emb|CAA63180.1| CDC44 [Saccharomyces cerevisiae]
 gi|1420505|emb|CAA99434.1| RFC1 [Saccharomyces cerevisiae]
 gi|256269587|gb|EEU04869.1| Rfc1p [Saccharomyces cerevisiae JAY291]
 gi|259149697|emb|CAY86501.1| Rfc1p [Saccharomyces cerevisiae EC1118]
 gi|285815096|tpg|DAA10989.1| TPA: Rfc1p [Saccharomyces cerevisiae S288c]
          Length = 861

 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 7/135 (5%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
           NI A +  D +  + +  V  +   A  +F     N     A   E+   IG   +   +
Sbjct: 103 NITAQDVLDKIPSLDLSNV-HVKENAKFDFKSANSN-----ADPDEIVSEIGSFPEGKPN 156

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL 704
            +    +VFTG L  ++R  ++    + GA V+  +S KT ++++GD  G  KLEK +QL
Sbjct: 157 CLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKLEKIKQL 216

Query: 705 GVKIMNEEQFLFLLQ 719
            +K ++EE F  L+ 
Sbjct: 217 KIKAIDEEGFKQLIA 231


>gi|225563290|gb|EEH11569.1| chromosome transmission fidelity factor [Ajellomyces capsulatus
           G186AR]
          Length = 1071

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +     V+           + +     VFTG L  + R + Q  V + G  V++  S KT
Sbjct: 313 QRSRDPVTSGSKDLPVGAENCLAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKT 372

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           + +++G + G  KLE  ++ G+K +NE+    L+++    
Sbjct: 373 NYVVLGSDAGPKKLETIRKFGLKSINEDGLFELIRRLPAN 412


>gi|255713750|ref|XP_002553157.1| KLTH0D10296p [Lachancea thermotolerans]
 gi|238934537|emb|CAR22719.1| KLTH0D10296p [Lachancea thermotolerans]
          Length = 864

 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 6/138 (4%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF-YQNPRNICAVEALLKEVSPSIGRHEKN 642
           I +  A   +  LS I    +  +  +   +F +++  N         + +       + 
Sbjct: 102 IQSAEAGTAEALLSQIPSVDLDAVHVKETAQFDFRSNGN----AGDSSQAAAEEANFPEG 157

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKA 701
             + +    +VFTG L  I+R  A+    + GA V+  +S KT ++++GD  G  KLEK 
Sbjct: 158 APNCLLGLTIVFTGQLPTIERGVAEAIAKRYGARVTKSISSKTSVVVLGDEAGPKKLEKI 217

Query: 702 QQLGVKIMNEEQFLFLLQ 719
           +QL +K ++E+ F  L+ 
Sbjct: 218 KQLKIKAIDEDGFKQLVA 235


>gi|320035705|gb|EFW17646.1| chromosome transmission fidelity factor [Coccidioides posadasii
           str. Silveira]
          Length = 1045

 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 4/137 (2%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
           A + +       +P V      A  + +     + A +      +           + + 
Sbjct: 245 AESKEIQAIFDSIPTVRPPSPPAEAKKFN---FMAANQRAHASAAGEPAELPIGAENCLA 301

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
               VFTG L  + R + Q  V + G  V+   S KT  +++G + G  KLE  ++  +K
Sbjct: 302 GLSFVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDAGPKKLETIRKHNLK 361

Query: 708 IMNEEQFLFLLQQYNTT 724
            +NE     L+++    
Sbjct: 362 TINEYGLFELIRKMPAN 378


>gi|145232225|ref|XP_001399565.1| replication factor C subunit 1 [Aspergillus niger CBS 513.88]
 gi|134056478|emb|CAK37567.1| unnamed protein product [Aspergillus niger]
          Length = 1058

 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 1/109 (0%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N  A     +          +   + +     VFTG L  + R + Q  V + G  
Sbjct: 297 KAKFNYAAHAQRSRSPVAGGADIPEGAENCLAGLSFVFTGVLDTLGRDEGQNLVKKYGGK 356

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           V+   S KT  +++G + G  KL   +Q  +K +NEE    L+++    
Sbjct: 357 VTGAPSSKTSYVVLGADAGPKKLATIKQHNLKTINEEGLFELIRRLPAN 405


>gi|303315067|ref|XP_003067541.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107211|gb|EER25396.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 1068

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 4/137 (2%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
           A + +       +P V      A  + +     + A +      +           + + 
Sbjct: 268 AESKEIQAIFDSIPTVRPPSPPAEAKKFN---FMAANQRAHASAAGEPAELPIGAENCLA 324

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
               VFTG L  + R + Q  V + G  V+   S KT  +++G + G  KLE  ++  +K
Sbjct: 325 GLSFVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDAGPKKLETIRKHNLK 384

Query: 708 IMNEEQFLFLLQQYNTT 724
            +NE     L+++    
Sbjct: 385 TINEYGLFELIRKMPAN 401


>gi|229137130|ref|ZP_04265749.1| DNA ligase [Bacillus cereus BDRD-ST26]
 gi|228646302|gb|EEL02517.1| DNA ligase [Bacillus cereus BDRD-ST26]
          Length = 74

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
          +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1  MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72 NGPLNKIGGEMNLSLFK 88
          + P  ++G    + L K
Sbjct: 58 DSPSVRVGERFLIYLKK 74


>gi|119190369|ref|XP_001245791.1| hypothetical protein CIMG_05232 [Coccidioides immitis RS]
          Length = 1068

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 4/137 (2%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
           A + +       +P V      A  + +     + A +      +           + + 
Sbjct: 268 AESKEIQAIFDSIPTVRPPSPPAEAKKFN---FMAANQRAHASAAGEPAELPIGAENCLA 324

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
               VFTG L  + R + Q  V + G  V+   S KT  +++G + G  KLE  ++  +K
Sbjct: 325 GLSFVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDAGPKKLETIRKHNLK 384

Query: 708 IMNEEQFLFLLQQYNTT 724
            +NE     L+++    
Sbjct: 385 TINEYGLFELIRKMPAN 401


>gi|299472502|emb|CBN77287.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 978

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 10/111 (9%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
             A     +   P+ G+ E  V  E  +  K  V +G L  + R  A++ + Q G  V+ 
Sbjct: 230 RPAWRGGARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTG 289

Query: 680 ILSRKTDIIIVG--------DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +S +T  +++G           GSK ++A  +  +I++E+    +L+  N
Sbjct: 290 AVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTRIIDEDGLFKMLRDSN 340


>gi|295674213|ref|XP_002797652.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb01]
 gi|226280302|gb|EEH35868.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb01]
          Length = 1066

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKA 701
             + +     VFTG L  + R + Q  V + G  V+   S KT  +++GD+ G  KLE  
Sbjct: 324 AENCLVGLSFVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETI 383

Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724
           ++ G+K +NEE    L+++    
Sbjct: 384 KKFGLKTINEEGLFELIRRLPAN 406


>gi|225684712|gb|EEH22996.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb03]
          Length = 1066

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKA 701
             + +     VFTG L  + R + Q  V + G  V+   S KT  +++GD+ G  KLE  
Sbjct: 324 AENCLVGLSFVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETI 383

Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724
           ++ G+K +NEE    L+++    
Sbjct: 384 KKFGLKTINEEGLFELIRRLPAN 406


>gi|226286728|gb|EEH42241.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb18]
          Length = 1066

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKA 701
             + +     VFTG L  + R + Q  V + G  V+   S KT  +++GD+ G  KLE  
Sbjct: 324 AENCLVGLSFVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETI 383

Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724
           ++ G+K +NEE    L+++    
Sbjct: 384 KKFGLKTINEEGLFELIRRLPAN 406


>gi|156087871|ref|XP_001611342.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798596|gb|EDO07774.1| conserved hypothetical protein [Babesia bovis]
          Length = 944

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 14/93 (15%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--------PGSKLEK 700
             + VFTG L  I R    E V  LG + +  +S KT+ ++ G+          GSK +K
Sbjct: 316 GMRFVFTGVLDAIDRDSVVELVRSLGGLTTGSVSSKTNYLVYGEKLEDGRHYTTGSKYKK 375

Query: 701 AQQL------GVKIMNEEQFLFLLQQYNTTLRI 727
           A +       G++++NE +FL L+   N + R+
Sbjct: 376 ALEFNKTKDAGIQLLNESEFLALIDYQNVSSRL 408


>gi|158336878|ref|YP_001518053.1| hypothetical protein AM1_3746 [Acaryochloris marina MBIC11017]
 gi|158307119|gb|ABW28736.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 1187

 Score = 90.5 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 44/86 (51%)

Query: 633  SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
            +      E      +  +  V TG L ++   + +  + + G  ++   S KT  ++VG 
Sbjct: 1096 TVPAVVPESQPGLPLSGQSFVITGKLAQLSYEQVKTIIQEAGGTINTHPSSKTSYVVVGK 1155

Query: 693  NPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +PG+KL+KA++  +  ++E+Q + LL
Sbjct: 1156 DPGNKLKKAEKYSIPQLSEQQLMELL 1181


>gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
 gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
          Length = 282

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 3/151 (1%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           SLA ++   Q              + +L L RV     +  +  ++F  +   +  +   
Sbjct: 131 SLANFFEVPQLRHHNALEDAFVCGELFLKLNRVEEELKLQEEHGMDFPSDY--LDWIAEK 188

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
             +      +     S  +   + V +G  Q   R + Q+ + Q G  ++  +S  T+ +
Sbjct: 189 QGQNVQIRRKALAGCSQLLSGLRFVISGNFQHFSRIEMQKIIVQNGGRITGSVSGLTNYL 248

Query: 689 IVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G   G SKL KA+  G K+++E Q L +L
Sbjct: 249 VCGSQAGNSKLSKAKLNGTKLISENQLLEIL 279


>gi|170724912|ref|YP_001758938.1| BRCT domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169810259|gb|ACA84843.1| BRCT domain protein [Shewanella woodyi ATCC 51908]
          Length = 209

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 24/181 (13%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  V ++  +SL+     Y      ++  ++ +  D +  ++   VG +  +  + F   
Sbjct: 25  INAVQSKNFQSLSNA-SEYCEVEHHLDVELSSSELDGVFNLKFWAVGSLTVEDFLAFLIE 83

Query: 619 PRNICAVEALLKEVS--------------PSIGRHEKNVSSEIEN-------KKLVFTGT 657
             N+ AVEA +                   S   ++ +  S +EN       + +V TG 
Sbjct: 84  ELNVSAVEAAVFIGDCGEYDFHFMSSEDDESFDEYDDHEWSWLENPVIEWEDQNIVLTGK 143

Query: 658 LQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
            +    R +  E +  LGA + + +S+KT +++ G   G SKLEKA+ LGV+I+ E + +
Sbjct: 144 FENYESRDELAEELEDLGANIRSSISKKTTLLVTGLRVGPSKLEKAKSLGVRIITENELM 203

Query: 716 F 716
            
Sbjct: 204 E 204


>gi|19113399|ref|NP_596607.1| DNA replication factor C complex subunit Rfc1 [Schizosaccharomyces
           pombe 972h-]
 gi|30913227|sp|O60182|RFC1_SCHPO RecName: Full=Replication factor C subunit 1; Short=Replication
           factor C1
 gi|3116125|emb|CAA18875.1| DNA replication factor C complex subunit Rfc1 [Schizosaccharomyces
           pombe]
          Length = 934

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           E      +P      +  S  +     V TG L+ + R +A + + Q G  V+   S +T
Sbjct: 220 ERAATTQTPGSKPVPEGNSDCLSGISFVITGILETLTRQEATDLIKQYGGKVTGAPSVRT 279

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           D I++G+N G  K+E  +Q  +  +NE+   +L+     +
Sbjct: 280 DFILLGENAGPRKVETIKQHKIPAINEDGLFYLITHLPAS 319


>gi|325118994|emb|CBZ54546.1| putative replication factor c subunit [Neospora caninum Liverpool]
          Length = 1128

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 18/96 (18%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NP 694
             S    K  VFTG L  + R +A   V   G   ++ +S KTD ++ G           
Sbjct: 442 SKSSFAGKTFVFTGVLDSMGRDEAVAAVVGNGGRCTSAVSGKTDYLVAGSLLEDGRDVTT 501

Query: 695 GSKLEKAQQL----------GVKIMNEEQFLFLLQQ 720
           GSK  KA QL           +KI++E++FL +L +
Sbjct: 502 GSKYRKALQLMQDGSAKQKASLKILHEQEFLAMLPE 537


>gi|255946327|ref|XP_002563931.1| Pc20g14550 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588666|emb|CAP86784.1| Pc20g14550 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1053

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +                  + +     VFTG L+ + R +  + V + G  V    S KT
Sbjct: 305 QQSRDPAMTGTKEMPVGEENCLAGLSFVFTGVLESLGREEGAQLVKKYGGKVVGAPSSKT 364

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             +++G + G  KLE   +  +K +NE+    L+++    
Sbjct: 365 SYVVLGADAGPKKLETIAKHKIKTINEDGLFELIRRLPAN 404


>gi|320170447|gb|EFW47346.1| replication factor C subunit 1 [Capsaspora owczarzaki ATCC 30864]
          Length = 1056

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
                  ++ +E    V TG    I R   +  +   G  V+  +S+KT  ++ G + G 
Sbjct: 298 KEIPTGATNCLEGLTFVVTGIFDAIDRTDLENLIKAHGGKVTGAVSKKTTYLVAGRDCGI 357

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK   A+++G KI++++    L++
Sbjct: 358 SKTRTAKEVGTKIVDDDAVFDLIR 381


>gi|7493936|pir||T18306 replication factor C protein - Emericella nidulans
 gi|2258283|gb|AAB63574.1| replication factor C like protein [Emericella nidulans]
 gi|27735373|gb|AAB63523.2| replication factor C like protein [Emericella nidulans]
          Length = 1092

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
                   + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G 
Sbjct: 318 AELPVGAENCLAGLTFVFTGVLDTLGREEGQALVKRYGGKVTTAPSGKTSFVVLGSDAGP 377

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           SKL    +  +K ++EE    L+++    
Sbjct: 378 SKLATISKHKLKTISEEGLFELIRRLPAN 406


>gi|154301785|ref|XP_001551304.1| hypothetical protein BC1G_10044 [Botryotinia fuckeliana B05.10]
 gi|150855706|gb|EDN30898.1| hypothetical protein BC1G_10044 [Botryotinia fuckeliana B05.10]
          Length = 1054

 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +   + +     VFTG L  I R +  E V + G  ++   S KT+ +++G + G 
Sbjct: 302 AEIPEGPENCLVGLTFVFTGMLDTISRDEGIELVKRYGGKITGAPSSKTNFVVLGKDAGP 361

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           SKL K   L +K ++E     LL+     
Sbjct: 362 SKLRKIATLKIKTIDEHGIFHLLRTLPAN 390


>gi|67540266|ref|XP_663907.1| hypothetical protein AN6303.2 [Aspergillus nidulans FGSC A4]
 gi|40739497|gb|EAA58687.1| hypothetical protein AN6303.2 [Aspergillus nidulans FGSC A4]
 gi|259479483|tpe|CBF69746.1| TPA: Replication factor C like protein
           [Source:UniProtKB/TrEMBL;Acc:P78622] [Aspergillus
           nidulans FGSC A4]
          Length = 1092

 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
                   + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G 
Sbjct: 318 AELPVGAENCLAGLTFVFTGVLDTLGREEGQALVKRYGGKVTTAPSGKTSFVVLGSDAGP 377

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           SKL    +  +K ++EE    L+++    
Sbjct: 378 SKLATISKHKLKTISEEGLFELIRRLPAN 406


>gi|296422835|ref|XP_002840964.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637191|emb|CAZ85155.1| unnamed protein product [Tuber melanosporum]
          Length = 1025

 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 1/100 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
                 ++P          + +     VFTG L+ + R   Q+ V + G  +++  S KT
Sbjct: 295 RQGAVPIAPGSKEIPVGQENCLTGLTFVFTGILESLAREDGQQLVKKYGGKITSAPSTKT 354

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             +++G + G  KL    +L +K +NE+    L+      
Sbjct: 355 SYVVLGSDAGPKKLATIHKLKIKTINEDGLFKLISSLPAN 394


>gi|238496567|ref|XP_002379519.1| DNA replication factor C subunit Rfc1, putative [Aspergillus flavus
           NRRL3357]
 gi|220694399|gb|EED50743.1| DNA replication factor C subunit Rfc1, putative [Aspergillus flavus
           NRRL3357]
          Length = 852

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
                   + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G 
Sbjct: 112 AEIPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTGAPSSKTSYVVLGGDAGP 171

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            KL+  +   +K +NEE    L+++    
Sbjct: 172 KKLKTIRDHNLKTINEEGLFELIRRLPAN 200


>gi|315050906|ref|XP_003174827.1| hypothetical protein MGYG_02357 [Arthroderma gypseum CBS 118893]
 gi|311340142|gb|EFQ99344.1| hypothetical protein MGYG_02357 [Arthroderma gypseum CBS 118893]
          Length = 1055

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 5/140 (3%)

Query: 590 HNNDDWLSLIRVPLV----GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
               D      +  +     ++ A +     +    + A +      +           +
Sbjct: 252 AAKTDQPESKEIQDILNSIPEVKAPSPPTATKKFNFVAAAQRAQSNGTIDDADLPVGEPN 311

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL 704
            +     VFTG L  + R + Q  V + G    +  S KT  +++G++ G  KLE  Q+ 
Sbjct: 312 CLAGLSFVFTGVLDSLGREQGQNLVKKFGGKSMSAPSSKTSYVVLGNDAGPKKLETIQKY 371

Query: 705 GVKIMNEEQFLFLLQQYNTT 724
            +K +NEE    L+++    
Sbjct: 372 KLKTINEEGLFELIRKLPAN 391


>gi|254583820|ref|XP_002497478.1| ZYRO0F06446p [Zygosaccharomyces rouxii]
 gi|238940371|emb|CAR28545.1| ZYRO0F06446p [Zygosaccharomyces rouxii]
          Length = 841

 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 6/130 (4%)

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEF-YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
              D L+ I    + ++  +  V+F ++N  N    +  +     S     +   + +  
Sbjct: 84  TAQDVLAKIPAVDLSNVHVKENVQFDFRNNNNGNDQDVPMG----SADDFPEGKPNCLLG 139

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKI 708
             LVFTGTL  I+R  A+    + GA ++  +S KT  +++G+  G  K++  ++LG+K 
Sbjct: 140 LTLVFTGTLPNIERGVAESIAKRYGARITKSISSKTSAVVLGEEAGPKKVDTIKKLGIKA 199

Query: 709 MNEEQFLFLL 718
           ++EE F  L+
Sbjct: 200 IDEEGFKQLI 209


>gi|83769742|dbj|BAE59877.1| unnamed protein product [Aspergillus oryzae]
          Length = 1054

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
                   + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G 
Sbjct: 314 AEIPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTGAPSSKTSYVVLGGDAGP 373

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            KL+  +   +K +NEE    L+++    
Sbjct: 374 KKLKTIRDHNLKTINEEGLFELIRRLPAN 402


>gi|67611464|ref|XP_667157.1| replication factor C subunit 1 [Cryptosporidium hominis TU502]
 gi|54658259|gb|EAL36923.1| replication factor C subunit 1 [Cryptosporidium hominis]
          Length = 854

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----- 692
           ++++ +        +V TGT     R + +++V  LG  +++ +S +T  +I G+     
Sbjct: 120 QNDEELIGPFNGMSIVVTGTFNSNSRQEIEDFVKILGGKLTSAVSGRTSYLIAGNSLEDG 179

Query: 693 ---NPGSKLEKAQQLGVKIMNEEQFLFL 717
                GSK   A+  GVKI++E++F+ +
Sbjct: 180 RSIEEGSKYRNAKSKGVKILSEDEFIEI 207


>gi|317147094|ref|XP_001821879.2| replication factor C subunit 1 [Aspergillus oryzae RIB40]
          Length = 1056

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
                   + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G 
Sbjct: 316 AEIPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTGAPSSKTSYVVLGGDAGP 375

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            KL+  +   +K +NEE    L+++    
Sbjct: 376 KKLKTIRDHNLKTINEEGLFELIRRLPAN 404


>gi|302657732|ref|XP_003020581.1| hypothetical protein TRV_05323 [Trichophyton verrucosum HKI 0517]
 gi|291184429|gb|EFE39963.1| hypothetical protein TRV_05323 [Trichophyton verrucosum HKI 0517]
          Length = 1069

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 67/184 (36%), Gaps = 2/184 (1%)

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + KR++ +L              + A++ A    S     ++     A   +       +
Sbjct: 222 VQKRKSAALSEDEEEGEDDGGKKKTAKARAPKTTSKST-PKKPRATKADQPESKEIQDIL 280

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             + ++ A +     +    + A +      +           + +     VFTG L  +
Sbjct: 281 NSIPEVKAPSPPTATKKFNFVAAAQRAQSGGTIDDSDLPVGEPNCLAGLSFVFTGVLDSL 340

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R + Q  V + G    +  S KT  +++G++ G  KLE  Q+  +K +NE     L+++
Sbjct: 341 GREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPKKLETIQKYKLKTINEGGLFELIRK 400

Query: 721 YNTT 724
               
Sbjct: 401 LPAN 404


>gi|302509032|ref|XP_003016476.1| hypothetical protein ARB_04765 [Arthroderma benhamiae CBS 112371]
 gi|291180046|gb|EFE35831.1| hypothetical protein ARB_04765 [Arthroderma benhamiae CBS 112371]
          Length = 1073

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 5/140 (3%)

Query: 590 HNNDDWLSLIRVPLV----GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
               D      +  +     ++ A +     +    + A +      +           +
Sbjct: 266 ATKADQPESKEIQDILNSIPEVKAPSPPTATKKFNFVAAAQRAQSSGTIDDSDLPVGEPN 325

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL 704
            +     VFTG L  + R + Q  V + G    +  S KT  +++G++ G  KLE  Q+ 
Sbjct: 326 CLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPKKLETIQKY 385

Query: 705 GVKIMNEEQFLFLLQQYNTT 724
            +K +NE     L+++    
Sbjct: 386 KLKTINEGGLFELIRKLPAN 405


>gi|326469755|gb|EGD93764.1| replication factor C protein [Trichophyton tonsurans CBS 112818]
 gi|326485097|gb|EGE09107.1| replication factor C subunit 1 [Trichophyton equinum CBS 127.97]
          Length = 1060

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 5/140 (3%)

Query: 590 HNNDDWLSLIRVPLV----GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
               D      +  +     ++ A +     +    + A +      +           +
Sbjct: 257 ATKADQPESKEIQDILNSIPEVKAPSPPTATKKFNFVAAAQRAQSSGTIDDSDLPVGEPN 316

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL 704
            +     VFTG L  + R + Q  V + G    +  S KT  +++G++ G  KLE  Q+ 
Sbjct: 317 CLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPKKLETIQKY 376

Query: 705 GVKIMNEEQFLFLLQQYNTT 724
            +K +NE     L+++    
Sbjct: 377 KLKTINEGGLFELIRKLPAN 396


>gi|156093631|ref|XP_001612854.1| replication factor C subunit 1 [Plasmodium vivax SaI-1]
 gi|148801728|gb|EDL43127.1| replication factor C subunit 1, putative [Plasmodium vivax]
          Length = 945

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 14/92 (15%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSK 697
              N K V TG  +   R + Q  + + G  V + +S KT  +I G+        N G K
Sbjct: 232 PFHNLKFVLTGVFKNFSRDELQSKIKEHGGSVMSAVSSKTHYLIHGEYLEDGRMYNEGKK 291

Query: 698 LEKAQQLG------VKIMNEEQFLFLLQQYNT 723
            +KA +L       +KI+NEEQ L ++ Q   
Sbjct: 292 YQKAFELQKMSKSIIKILNEEQLLQMMPQEKD 323


>gi|258565361|ref|XP_002583425.1| hypothetical protein UREG_06392 [Uncinocarpus reesii 1704]
 gi|237907126|gb|EEP81527.1| hypothetical protein UREG_06392 [Uncinocarpus reesii 1704]
          Length = 729

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-S 696
                  + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G  
Sbjct: 17  EIPVRAENCLAELSFVFTGVLDALGREEGQALVKRYGGKVTTAPSSKTSYVVLGGDAGPK 76

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           KLE  ++ G+K ++E     L+++    
Sbjct: 77  KLETIRKHGLKTIDEHGLFELIRKMPAN 104


>gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 302

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 14/98 (14%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---- 691
           +   +K+    ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G    
Sbjct: 205 LKEKKKDGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDL 264

Query: 692 ----DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
               +N  S KLEKA+ L      +KI+NEE+FL +++
Sbjct: 265 NKLKENEKSIKLEKAENLIKENFDIKIINEEEFLSIIE 302


>gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
          Length = 302

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 14/98 (14%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---- 691
           +   +K+    ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G    
Sbjct: 205 LKEKKKDGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDL 264

Query: 692 ----DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
               +N  S KL+KA+ L      +KI+NEE+FL +++
Sbjct: 265 NKLKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302


>gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
          Length = 302

 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 14/98 (14%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---- 691
           +   +K     ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ ++ G    
Sbjct: 205 LKEKKKEGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLVTGIRDL 264

Query: 692 ----DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
               +N  S KL+KA+ L      +KI+NEE+FL +++
Sbjct: 265 SELKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302


>gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101]
 gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 302

 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 14/98 (14%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---- 691
           +   +K     ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ ++ G    
Sbjct: 205 LKEKKKEGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLVTGIRDL 264

Query: 692 ----DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
               +N  S KL+KA+ L      +KI+NEE+FL +++
Sbjct: 265 SELKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302


>gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 302

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 14/98 (14%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---- 691
           +   +K+    ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G    
Sbjct: 205 LKEKKKDGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDL 264

Query: 692 ----DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
               +N  S KL+KA+ L      +KI+NEE+FL +++
Sbjct: 265 NKLKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302


>gi|221507917|gb|EEE33504.1| replication factor C subunit, putative [Toxoplasma gondii VEG]
          Length = 1260

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 18/96 (18%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NP 694
            +S    K  VFTG L  + R +A   V   G   ++ +S +TD ++ G           
Sbjct: 463 STSCFAGKTFVFTGVLDSMAREEAVSAVVGNGGRCTSAVSGRTDYLVAGALLEDGRDVTT 522

Query: 695 GSKLEKAQQL----------GVKIMNEEQFLFLLQQ 720
           GSK  KA QL           +KI++E++FL +L +
Sbjct: 523 GSKYRKALQLMHDGKGKQKTSLKILHEQEFLAMLPE 558


>gi|221483441|gb|EEE21760.1| replication factor C subunit, putative [Toxoplasma gondii GT1]
          Length = 1260

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 18/96 (18%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NP 694
            +S    K  VFTG L  + R +A   V   G   ++ +S +TD ++ G           
Sbjct: 463 STSCFAGKTFVFTGVLDSMAREEAVSAVVGNGGRCTSAVSGRTDYLVAGALLEDGRDVTT 522

Query: 695 GSKLEKAQQL----------GVKIMNEEQFLFLLQQ 720
           GSK  KA QL           +KI++E++FL +L +
Sbjct: 523 GSKYRKALQLMHDGKGKQKTSLKILHEQEFLAMLPE 558


>gi|237839249|ref|XP_002368922.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
 gi|211966586|gb|EEB01782.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
          Length = 1260

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 18/96 (18%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NP 694
            +S    K  VFTG L  + R +A   V   G   ++ +S +TD ++ G           
Sbjct: 463 STSCFAGKTFVFTGVLDSMAREEAVSAVVGNGGRCTSAVSGRTDYLVAGALLEDGRDVTT 522

Query: 695 GSKLEKAQQL----------GVKIMNEEQFLFLLQQ 720
           GSK  KA QL           +KI++E++FL +L +
Sbjct: 523 GSKYRKALQLMHDGKGKQKTSLKILHEQEFLAMLPE 558


>gi|209876712|ref|XP_002139798.1| replication factor C subunit protein [Cryptosporidium muris RN66]
 gi|209555404|gb|EEA05449.1| replication factor C subunit protein, putative [Cryptosporidium
           muris RN66]
          Length = 845

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---DNP-- 694
           EK+ +  +E K +V TG  +K  R   ++ V  LG  +++ +S +T  +I G   ++   
Sbjct: 144 EKDPNLPLEGKSIVVTGLFEKKSRSDIEDLVKILGGKLTSAVSGRTSYLIAGYILEDGRG 203

Query: 695 ---GSKLEKAQQLGVKIMNEEQFLFL 717
              GSK + A    ++I++E++F+ +
Sbjct: 204 ITEGSKYKSAISKNIQILSEDEFINM 229


>gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC
           13124]
 gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 302

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 14/98 (14%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---- 691
           +   +K     ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G    
Sbjct: 205 LKEKKKEGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDL 264

Query: 692 ----DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
               +N  S KL+KA+ L      +KI+NEE+FL +++
Sbjct: 265 NKLKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302


>gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
 gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
          Length = 306

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 14/91 (15%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNP 694
           S   ++K +VFTGTL+ + R  A + ++QLG  V + ++RKTD +IV             
Sbjct: 216 SDVFKHKTVVFTGTLKSMSRLSAIQLISQLGGTVGSSVTRKTDFLIVSHPAVYELQPHEM 275

Query: 695 GSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
            +KL+KA +L      ++I+NE +FL  L +
Sbjct: 276 STKLKKAIELIYKGQAIQILNESEFLEQLTK 306


>gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str.
           13]
 gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
          Length = 302

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 14/98 (14%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---- 691
           +   +K     ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G    
Sbjct: 205 LKEKKKEGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDL 264

Query: 692 ----DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
               +N  S KL+KA+ L      +KI+NEE+FL +++
Sbjct: 265 NKLKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302


>gi|281202783|gb|EFA76985.1| replication factor C subunit [Polysphondylium pallidum PN500]
          Length = 1512

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKA 701
             S ++ K  + +G L+  +R + ++ + + G VV   +++K +  + G   G SKLEK 
Sbjct: 624 TPSCLKRKNYLISGALESFERDELKDIIERHGGVVVTTVTKKLNFFVEGFEAGVSKLEKV 683

Query: 702 QQLGVKIMNEEQFLFLLQQ 720
           ++ G+ I+ E+  L  + +
Sbjct: 684 KKYGIPIITEDDVLDRINK 702


>gi|66356684|ref|XP_625520.1| DNA replication repC1, AAA+ ATpase with a BRCT domain at the
           N-terminus [Cryptosporidium parvum Iowa II]
 gi|46226521|gb|EAK87515.1| DNA replication repC1, AAA+ ATpase with a BRCT domain at the
           N-terminus [Cryptosporidium parvum Iowa II]
          Length = 874

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----- 692
           + ++ +        +V TGT     R + +++V  LG  +++ +S +T  +I G+     
Sbjct: 140 QSDEELIGPFNGMSIVVTGTFNNNSRQEIEDFVKILGGKLTSAVSGRTSYLIAGNSLEDG 199

Query: 693 ---NPGSKLEKAQQLGVKIMNEEQFLFL 717
                GSK   A+  GV I++E++F+ +
Sbjct: 200 RSIEEGSKYRNAKSKGVNILSEDEFIEI 227


>gi|327303742|ref|XP_003236563.1| chromosome transmission fidelity factor [Trichophyton rubrum CBS
           118892]
 gi|326461905|gb|EGD87358.1| chromosome transmission fidelity factor [Trichophyton rubrum CBS
           118892]
          Length = 1058

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 5/140 (3%)

Query: 590 HNNDDWLSLIRVP----LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
               D      +      + ++ A +     +    + A +      +           +
Sbjct: 255 ATKADQQESKEIQAILNSIPEVKAPSPPTATKKFNFVAAAQRAQSSGTIDDSDLPVGEPN 314

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL 704
            +     VFTG L  + R + Q  V + G    +  S KT  +++G++ G  KLE  Q+ 
Sbjct: 315 CLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPKKLETIQKY 374

Query: 705 GVKIMNEEQFLFLLQQYNTT 724
            ++ +NE     L+++    
Sbjct: 375 KLRTINEGGLFELIRKLPAN 394


>gi|115383954|ref|XP_001208524.1| hypothetical protein ATEG_01159 [Aspergillus terreus NIH2624]
 gi|114196216|gb|EAU37916.1| hypothetical protein ATEG_01159 [Aspergillus terreus NIH2624]
          Length = 1053

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 1/109 (0%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q   N  A  A   E +           + +     VFTG L  + R +    V Q G  
Sbjct: 307 QGKFNFAAQAARSTEPTGERAELPIGADNCLAGLSFVFTGVLDTLGRDEGVSLVKQYGGR 366

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           V    S KT  +++G + G SKL   +   +K +NE+    L+++    
Sbjct: 367 VVGTPSSKTSYVVLGHDAGPSKLRTIKDNNLKTINEQGLFELIRRLPAN 415


>gi|91081967|ref|XP_967820.1| PREDICTED: similar to replication factor C large subunit, putative
           [Tribolium castaneum]
 gi|270007366|gb|EFA03814.1| hypothetical protein TcasGA2_TC013927 [Tribolium castaneum]
          Length = 985

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
            +    K   + ++N   + TG L  +   +    + Q G  V   +S+K + ++VG  P
Sbjct: 240 GMKELPKGKPNCLQNLCFLRTGVLDSLDSEEFANIIKQHGGRVVHAVSKKVNYVVVGAEP 299

Query: 695 G-SKLEKAQQLGVKIMNEEQFLFLL 718
           G +KL KA+   +  ++E++ L ++
Sbjct: 300 GPAKLAKAESYNIPNISEDELLDMI 324


>gi|224011579|ref|XP_002295564.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583595|gb|ACI64281.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 649

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 23/152 (15%)

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           S    A+    ++A +     ++ ++   G   A A     +   NI             
Sbjct: 479 SVAGRARAALEVLAASRAA-EAVPQLENGGASTAVAASSGTRERFNI------------- 524

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQ--------RHKAQEYVTQLGAVVSAILSRKTDI 687
                  ++  +  K++V TGT  ++         + + +E +   G  V+  +S KTD 
Sbjct: 525 PRPGADGIAGILNGKRVVLTGTFPEVGGGTGLNAGKDRMKEMIESFGGKVTGSVSGKTDY 584

Query: 688 IIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +IVG +PG SK+ KA Q G+ +MN  Q   LL
Sbjct: 585 LIVGRDPGASKVGKAHQRGLPLMNILQLQHLL 616



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH---------KAQEYVTQLGAVVSAILSRK 684
           P+ G      +S ++ K  + TG+  ++              +  +      V+   S+ 
Sbjct: 295 PTPGVDGSADASFLKGKTFIITGSFPELVGGVKAKDAGVGDVKHCLESFEGKVTTRFSKM 354

Query: 685 TDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           T+ ++VG +   SK   A    V ++N  +   LL   +T   I D
Sbjct: 355 TNYLVVGRDAVQSKFSDAFTREVTVINLPRLKSLLMGGHTFDSIED 400


>gi|123395219|ref|XP_001300705.1| differentiation specific element binding protein [Trichomonas
           vaginalis G3]
 gi|121881785|gb|EAX87775.1| differentiation specific element binding protein, putative
           [Trichomonas vaginalis G3]
          Length = 876

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKA 701
           S  +E    V TGT+  I R   ++ + + G  ++  +S KTD++I G  +   SKL +A
Sbjct: 49  SGCLEGITFVATGTMPSITRETLKDIIEKYGGRLTTSISGKTDVVIRGCIEVGPSKLAQA 108

Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724
           ++ G+ I++EE     LQ  N  
Sbjct: 109 RERGLLIIDEESLFQYLQSTNPN 131


>gi|253742407|gb|EES99241.1| Replication factor C, subunit 1 [Giardia intestinalis ATCC 50581]
          Length = 886

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
           A  + + ++ I  PL+ +  A  I    +  +   +  +             + +++ + 
Sbjct: 117 AAESINPVAQIERPLIDEPFANLIPANVEPAKGGGSYNSRTNASVNYETPRPRGLANSLS 176

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
               V TG L+ +     + Y+  LG  V+  +S KT  +IVGD+PG +KL  A+   V+
Sbjct: 177 KLIFVRTGNLRTMSDTDMKLYIANLGGTVTTSVSGKTSYLIVGDDPGATKLRDAKAKFVR 236

Query: 708 IMNEEQFLFLLQQYNT 723
           I++E++F  L+ +  +
Sbjct: 237 IISEKEFYDLIVKKGS 252


>gi|149248210|ref|XP_001528492.1| activator 1 95 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
 gi|146448446|gb|EDK42834.1| activator 1 95 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
          Length = 709

 Score = 84.3 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           +  + R+ A+    + GA V+  +S+ T  +++G + G SK++K ++LG K ++E+ FL 
Sbjct: 1   MPNLDRNYAESTAQRYGAKVTKSISKNTSFVVIGADAGWSKVDKIKKLGTKTIDEDGFLQ 60

Query: 717 LLQQYNT 723
           LL++   
Sbjct: 61  LLEKMPE 67


>gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC
           824]
 gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing
           BRCT domain [Clostridium acetobutylicum ATCC 824]
          Length = 306

 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 488 KQQLDFFFKSEDPAFSIRIPA--DIFTLQRR-QQTSTTKIENILGFGDVSVTNLYDSINK 544
            +  +      D    I   A  DI  L++  +  +    E           N Y  I  
Sbjct: 68  DKVWEKIKHYFDDTLVIAHNASFDISVLRKSAELYNIELPEFNYICTMKLARNFYKGIEN 127

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  ++  F+     RH    +  +LA       N    I+  +   +   +S +    V
Sbjct: 128 AKLNTVNNFL-GYEFRH-HDALYDALA-----CSNIMLSISKELKCKDITEISKLLGVTV 180

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G + ++         + I    +     S      E+  + E +N+ +VFTG L  + R 
Sbjct: 181 GKVDSKGYKP--SQTKGIAVRTSDRIYFSKKKSAFERLKADEFKNEVVVFTGRLDSMSRD 238

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMN 710
           +A   V +LG    + +++KT I++           +   +KL++A  L      +K +N
Sbjct: 239 EAMGLVRRLGGTAGSSVTKKTTILVTNMKNIKNLRREEMSNKLKRASDLNARGQNIKFLN 298

Query: 711 EEQFLFL 717
           EE+FL +
Sbjct: 299 EEEFLKI 305


>gi|296812349|ref|XP_002846512.1| replication factor C subunit 1 [Arthroderma otae CBS 113480]
 gi|238841768|gb|EEQ31430.1| replication factor C subunit 1 [Arthroderma otae CBS 113480]
          Length = 1056

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +      S           + +     VFTG L  + R + Q  V + G       S KT
Sbjct: 295 QRAQSNGSMDNADLPTGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKSMTAPSSKT 354

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             +++G++ G  KLE  ++  +K +NEE    L+++    
Sbjct: 355 SYVVLGNDAGPKKLETIKKYKLKTINEEGLFELIRKLPAN 394


>gi|82541068|ref|XP_724804.1| replication factor C, 140 kDa subunit [Plasmodium yoelii yoelii
           str. 17XNL]
 gi|23479576|gb|EAA16369.1| replication factor C, 140 kDa subunit [Plasmodium yoelii yoelii]
          Length = 888

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 14/86 (16%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSK 697
              NKK V TG  +   R   Q  + + G  V + +S +T  ++ G+        + G K
Sbjct: 182 PFINKKFVLTGVFKTYSRDDLQNKIKEHGGSVMSAVSSRTHYLVHGEYLEDGRLYSEGKK 241

Query: 698 LEKAQQLG------VKIMNEEQFLFL 717
            +KA +L       +KI+NEE+ L +
Sbjct: 242 YQKAYELSKQSKSIIKILNEEELLQM 267


>gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA
           2018]
          Length = 317

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 488 KQQLDFFFKSEDPAFSIRIPA--DIFTLQRR-QQTSTTKIENILGFGDVSVTNLYDSINK 544
            +  +      D    I   A  DI  L++  +  +    E           N Y  I  
Sbjct: 79  DKVWEKIKHYFDDTLVIAHNASFDISVLRKSAELYNIELPEFNYICTMKLARNFYKGIEN 138

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  ++  F+     RH    +  +LA       N    I+  +   +   +S +    V
Sbjct: 139 AKLNTVNNFL-GYEFRH-HDALYDALA-----CSNIMLSISKELKCKDITEISKLLGVTV 191

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G + ++         + I    +     S      E+  + E +N+ +VFTG L  + R 
Sbjct: 192 GKVDSKGYKP--SQTKGIAVRTSDRIYFSKKKSAFERLKADEFKNEVVVFTGRLDSMSRD 249

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMN 710
           +A   V +LG    + +++KT I++           +   +KL++A  L      +K +N
Sbjct: 250 EAMGLVRRLGGTAGSSVTKKTTILVTNMKNIKNLRREEMSNKLKRASDLNARGQNIKFLN 309

Query: 711 EEQFLFL 717
           EE+FL +
Sbjct: 310 EEEFLKI 316


>gi|147867164|emb|CAN82054.1| hypothetical protein VITISV_029381 [Vitis vinifera]
          Length = 783

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN- 693
                 +  S  +     V +GTL  ++R +A++ + + G  V+       + ++  ++ 
Sbjct: 185 GEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS-----NFLLCDEDI 239

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
            G+K  KA++LG   + E+    ++   N        +
Sbjct: 240 GGNKSAKAKELGTAFLTEDGLFDMIXASNHAKAPAQGE 277


>gi|207109383|ref|ZP_03243545.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 53

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 38/53 (71%)

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  LGA +S+ +S KTD +I G+NPGSKL  A++ GV ++NEE+ L  L++ +
Sbjct: 1   LENLGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKELD 53


>gi|330884612|gb|EGH18761.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 52

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL
Sbjct: 1   QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKL 49


>gi|307690045|ref|ZP_07632491.1| BRCT domain-containing protein [Clostridium cellulovorans 743B]
          Length = 200

 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
            ++ +E + + FTG      R+  QE   + GA +S  ++ KT +++VG N GSKL+KA 
Sbjct: 117 STNILEGEVVCFTGQ-SDYPRNTMQEIAMKNGAEISNSITLKTTMLVVGLNSGSKLDKAH 175

Query: 703 QLGVKIMNEEQFLFLL 718
           + G+ I+++ +F+ +L
Sbjct: 176 EKGISIIDDTEFMKML 191


>gi|302873722|ref|YP_003842355.1| BRCT domain-containing protein [Clostridium cellulovorans 743B]
 gi|302576579|gb|ADL50591.1| BRCT domain protein [Clostridium cellulovorans 743B]
          Length = 271

 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
            ++ +E + + FTG      R+  QE   + GA +S  ++ KT +++VG N GSKL+KA 
Sbjct: 188 STNILEGEVVCFTGQ-SDYPRNTMQEIAMKNGAEISNSITLKTTMLVVGLNSGSKLDKAH 246

Query: 703 QLGVKIMNEEQFLFLL 718
           + G+ I+++ +F+ +L
Sbjct: 247 EKGISIIDDTEFMKML 262


>gi|229175172|ref|ZP_04302688.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3]
 gi|228608308|gb|EEK65614.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3]
          Length = 280

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 13/95 (13%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---- 692
              E +       K +VFTG L    R +A + +   G +    +++ T+ II+GD    
Sbjct: 186 VATEVSEDHPFYQKHIVFTGKLNAYTRIEAAQLIANKGGIPQNGINKNTNYIIIGDFDNV 245

Query: 693 ----NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718
               N  SKLEKA++L      ++I++EE+F+ +L
Sbjct: 246 MIKGNKSSKLEKAEKLIAQGKELEIISEEEFMRML 280


>gi|104774090|ref|YP_619070.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423171|emb|CAI97964.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 261

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            N      ++  L + +  I    K V S +  ++ V TG  ++  R++    +   G  
Sbjct: 156 NNIVYQKLLDGDLAKATEIIDFTPKQVDSRLAGQRFVITGQFRQATRYELTSLIQSHGGK 215

Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S  TD ++ G+  +   K +KA + G  ++  E  + LLQ+
Sbjct: 216 VTGSVSGVTDYLLKGELDHVTGKCKKAAEKGTAVIGYEDLMLLLQK 261


>gi|297516518|ref|ZP_06934904.1| NAD-dependent DNA ligase LigB [Escherichia coli OP50]
          Length = 83

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 9  IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
            A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F    R 
Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPRD 81


>gi|330948476|gb|EGH48736.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 60

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           +E    LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L +    +
Sbjct: 1   KEKRESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLTELGVAV 59


>gi|219113609|ref|XP_002186388.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583238|gb|ACI65858.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 942

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN------ 693
           +K     +     VF+G L  + R   QE V  LG  ++  +S  T+ ++VG+       
Sbjct: 194 DKAAPECLRGCTFVFSGVLPNLSREDGQEMVKTLGGRITGAVSSLTNYLVVGEELEDGRV 253

Query: 694 --PGSKLEKAQQLGVKIM-NEEQFLFLLQQYNT 723
              GSK ++A Q G  I+  EE F  LLQQYN 
Sbjct: 254 YTEGSKYKRAVQEGTHIVQGEEAFYGLLQQYND 286


>gi|217973787|ref|YP_002358538.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|217498922|gb|ACK47115.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
          Length = 300

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 15/89 (16%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NPG 695
            E+  + +VFTG L  + R +A E   +LG  + + +S+KTD ++VG+            
Sbjct: 210 GELYGQTIVFTGELS-MTRAEAFEAAVELGLEIKSGVSKKTDYLVVGEQDANLVGPTGIS 268

Query: 696 SKLEKAQQL-----GVKIMNEEQFLFLLQ 719
           SK  KA+ L      ++I++E++F+ L+ 
Sbjct: 269 SKQIKAEALIDEGFDIQIIDEDEFITLIN 297


>gi|228904210|ref|ZP_04068305.1| NAD-dependent DNA ligase [Bacillus thuringiensis IBL 4222]
 gi|228931183|ref|ZP_04094119.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228828465|gb|EEM74165.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228855295|gb|EEM99859.1| NAD-dependent DNA ligase [Bacillus thuringiensis IBL 4222]
          Length = 490

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 114/283 (40%), Gaps = 31/283 (10%)

Query: 94  PTLSL--EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
           P  S+   K +N  ++  F +         +D  +      K +G  I I Y  G++V A
Sbjct: 96  PMKSILTVKSFNSAEMGIFKS------NYPEDEPVTLHGSLKENGWGIRIAYMDGEYVSA 149

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPE-IIEVRGEVYISKNDFLALNDEMIAVG 209
             R    +G+D++  +  +     +L+L ++P+ + EVRGE+ +S       N+   A  
Sbjct: 150 TSRARASAGKDLTRQVGVVLEKKGLLTLEDVPDGLAEVRGELLLS------FNNLDEARA 203

Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL---GF 266
             P      +    + R + ++    L  FV       ++  + + E  + ++       
Sbjct: 204 YNPNIVSAFSGVASMARDSASEEENALLDFVAYTIIHEDLEFESKSEEYRYLKEYLGFEV 263

Query: 267 PVNNGVR--QANTFHGIVS-----YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG-ER 318
           P+N  +     +    ++         E+ +      Y  DG+V ++D+++    LG + 
Sbjct: 264 PLNWTIEDVTIDELEEVLEDTLAEIEEEVFNEAEPYEYFTDGVVIQIDDYATFHALGDDG 323

Query: 319 ARSPRWMISHK---FAEKQASTRLLDIDIQIGRTGILTPVARL 358
            +  +  I+ K   +++      +  ID   G+   L+PVA L
Sbjct: 324 GKYNKGNIALKVGAWSQDNYYGYVQYIDFSKGK-SKLSPVAIL 365


>gi|207109554|ref|ZP_03243716.1| NAD-dependent DNA ligase LigA [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 87

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
          S ++  + ++ L   +S+H   YY    PI+ D+ YD L +   A     P+  ++   N
Sbjct: 4  SQKEYLERIAYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---N 56

Query: 73 GPLNKIGGEMNLSLFK 88
           P  K+G     S  K
Sbjct: 57 SPTQKVGAITTNSFNK 72


>gi|154416257|ref|XP_001581151.1| transcription factor [Trichomonas vaginalis G3]
 gi|121915376|gb|EAY20165.1| transcription factor, putative [Trichomonas vaginalis G3]
          Length = 687

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 56/125 (44%), Gaps = 8/125 (6%)

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVS----PSIGRHEKNVSSE--IENKKLVFTGTLQ 659
             +A+  +  +        + A  +       P  G+    V     +     V TGT+ 
Sbjct: 3   PKVAKVDLRPFPKRDENFTINAGFQYGKGDNPPLYGQKVIPVGKPNCLLGNTFVPTGTMV 62

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFL 717
            ++R + ++ +T+ G  V++ +S KTD ++VG  +    K++  ++  +  ++E+   +L
Sbjct: 63  SLKREQVKDLITKYGGKVTSSISGKTDCVVVGCIEVGPKKIQTCREKNIPTIDEDGLFYL 122

Query: 718 LQQYN 722
           + + +
Sbjct: 123 IARSD 127


>gi|66808577|ref|XP_638011.1| replication factor C subunit [Dictyostelium discoideum AX4]
 gi|74853625|sp|Q54MH9|RFC1_DICDI RecName: Full=Probable replication factor C subunit 1; AltName:
           Full=Activator 1 subunit 1
 gi|60466460|gb|EAL64515.1| replication factor C subunit [Dictyostelium discoideum AX4]
          Length = 1401

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +   + +  K  + +G +   +R +  + + + G  V+    +  + ++ G + G 
Sbjct: 632 KPRPQGKENCLRGKVFLVSGVMDCFERDEMHDIIKRWGGKVAKSAVKLLNYLVSGKDVGE 691

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            KLE A+++G KI+ E++FL ++ +
Sbjct: 692 KKLEGAKKVGAKIITEDEFLEMINK 716


>gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 303

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            + +   + + +  ++ +      +L  +     + A     + A       S+   P  
Sbjct: 118 SKKV--WQGLPAYDLKTLCKVNNINLKHHRAGADSKATAELTLKAFEIAGVSSIDDFPEK 175

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
                  +      P     +              + N  S    + +VFTG L  + R 
Sbjct: 176 LKTTVGQLYNGGYKPAETKRIYKAKDLTKIEGDPTKHNTESIFYGRTVVFTGALSSMVRA 235

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMN 710
           +AQ+ +  +G ++   ++++TD ++VG         D   SK +KA  L      ++I++
Sbjct: 236 EAQQTIADIGGILGNGVTKETDFLVVGQQDYRVVGEDGMSSKQKKAISLIEKGSSLEILS 295

Query: 711 EEQFLFLL 718
           E+ FL  L
Sbjct: 296 EDDFLKCL 303


>gi|75758724|ref|ZP_00738839.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493734|gb|EAO56835.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 468

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 114/283 (40%), Gaps = 31/283 (10%)

Query: 94  PTLSL--EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
           P  S+   K +N  ++  F +         +D  +      K +G  I I Y  G++V A
Sbjct: 74  PMKSILTVKSFNSAEMGIFKS------NYPEDEPVTLHGSLKENGWGIRIAYMDGEYVSA 127

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPE-IIEVRGEVYISKNDFLALNDEMIAVG 209
             R    +G+D++  +  +     +L+L ++P+ + EVRGE+ +S       N+   A  
Sbjct: 128 TSRARASAGKDLTRQVGVVLEKKGLLTLEDVPDGLAEVRGELLLS------FNNLDEARA 181

Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL---GF 266
             P      +    + R + ++    L  FV       ++  + + E  + ++       
Sbjct: 182 YNPNIVSAFSGVASMARDSASEEENALLDFVAYTIIHEDLEFESKSEEYRYLKEYLGFEV 241

Query: 267 PVNNGVR--QANTFHGIVS-----YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG-ER 318
           P+N  +     +    ++         E+ +      Y  DG+V ++D+++    LG + 
Sbjct: 242 PLNWTIEDVTIDELEEVLEDTLAEIEEEVFNEAEPYEYFTDGVVIQIDDYATFHALGDDG 301

Query: 319 ARSPRWMISHK---FAEKQASTRLLDIDIQIGRTGILTPVARL 358
            +  +  I+ K   +++      +  ID   G+   L+PVA L
Sbjct: 302 GKYNKGNIALKVGAWSQDNYYGYVQYIDFSKGK-SKLSPVAIL 343


>gi|145483437|ref|XP_001427741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394824|emb|CAK60343.1| unnamed protein product [Paramecium tetraurelia]
          Length = 807

 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 627 ALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
              K++   I + +   +    +    +V +G L    R K ++++   GA V+  +S K
Sbjct: 85  ENKKQMDVEIEKQDVFKNDPDLLNGLTIVLSGILNVCSRDKFEQFLKNNGAKVTGSVSGK 144

Query: 685 TDIIIVGDN--------PGSKLEKAQQLGVKIMNEEQFLFLL 718
           T+ +IVGD          G+K ++A + G KI+ E +    L
Sbjct: 145 TNYLIVGDKLEDGRKGEEGNKFKEATKKGTKIIRENELNNWL 186


>gi|213620560|ref|ZP_03373343.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
          Length = 99

 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 9  IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
            A    +A +E++ L+Q+++  +D Y++     + DS YD L  R             S
Sbjct: 22 CPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS 81

Query: 69 EDPNGPLNKIGGEMNLSLFKVTHS 92
             + PLN        ++  V H+
Sbjct: 82 TPVSPPLN------GTTMHPVAHT 99


>gi|257059000|ref|YP_003136888.1| BRCT domain protein [Cyanothece sp. PCC 8802]
 gi|256589166|gb|ACV00053.1| BRCT domain protein [Cyanothece sp. PCC 8802]
          Length = 569

 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 95/224 (42%), Gaps = 16/224 (7%)

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           I+   +    +R+Q  +  +        +  +     ++ +  N    +           
Sbjct: 359 IKTLEETLNQERQQIATLQQQTQARETVESELQQHIKTLEETLNQERHKV---------- 408

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI--RVPLVGDIIAQAIVEFYQNPRN 621
                SL ++  + Q   Q    +    + +  S+   +   V       I E  +  + 
Sbjct: 409 ----ASLEEHIQALQQEPQPTATVTTELDVEVTSVASQQEEKVLPQEETTIAEVTEEEKV 464

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           +   E  + EV+P   +      + +  KK+V  G+L ++ R +A+ Y+ + G  +++ L
Sbjct: 465 LPQEETTIAEVTPEESQESSAKENPLSGKKVVIAGSLSQMTREEARGYLQKAGGSLTSSL 524

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           S KT  I++G+ PG K++KA +LGV  + E QF+ LL+  N ++
Sbjct: 525 SSKTHYIVIGNAPGDKVKKAHKLGVTQLTETQFMDLLKSANISI 568


>gi|71027899|ref|XP_763593.1| replication factor C large subunit [Theileria parva strain Muguga]
 gi|68350546|gb|EAN31310.1| replication factor C large subunit, putative [Theileria parva]
          Length = 1084

 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 16/107 (14%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----- 693
             +  +S IE KK VFTG +  I R +A   V +LG +V + +S  TD ++ GD      
Sbjct: 367 ENEKSTSRIEGKKFVFTGEM-GIDRLEATLRVKKLGGIVVSAVSGVTDYLVYGDRLEDGR 425

Query: 694 ---PGSKLEKAQQL------GVKIMNEEQFLFLLQQYNTTLRIHDDD 731
               G K +KA +L       ++++NEEQFL LL Q N    +  D+
Sbjct: 426 PYQSGLKYKKAIELNNKKKRNIQLLNEEQFLQLL-QSNIDENVKTDN 471


>gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018]
          Length = 301

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 14/90 (15%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------P 694
                N+ +VFTG L+K+ R  AQ+ V  LG V+   ++++T+ +I+GDN          
Sbjct: 211 DGFFYNRHVVFTGKLEKMLRKDAQQIVVNLGGVLDNSVTKQTNYLILGDNDYNAILKGDK 270

Query: 695 GSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
            SK +KA++L      ++I++E  F  LL 
Sbjct: 271 SSKHKKAEKLKIEGQDIEIIDEHTFYDLLN 300


>gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
 gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
          Length = 307

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 14/90 (15%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------P 694
                N+ +VFTG L+K+ R  AQ+ V  LG V+   ++++T+ +I+GDN          
Sbjct: 217 DGFFYNRHVVFTGKLEKMLRKDAQQIVVNLGGVLDNSVTKQTNYLILGDNDYNAILKGDK 276

Query: 695 GSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
            SK +KA++L      ++I++E  F  LL 
Sbjct: 277 SSKHKKAEKLKIEGQDIEIIDEHTFYDLLN 306


>gi|126696886|ref|YP_001091772.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543929|gb|ABO18171.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9301]
          Length = 249

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 75/295 (25%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +++ Y D+ Y +  + II D  +         +   F  +   ++PN    K   ++ 
Sbjct: 5   LVRDVKYLDEQY-RIGEGIISDDAF-------KQLEKLF--IPVDQEPNYFNQK-NNKLL 53

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
             L K                E+ ++F+  +              +++PKIDG  I IRY
Sbjct: 54  PKLAK----------------ENYKEFLESLL--------TKTRLSIQPKIDGCAIAIRY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             GKF  A  +     G DVS+ I+ I  +P  + +      ++RGE+Y +         
Sbjct: 90  LDGKFNKAITK----KGFDVSSKIKQIKNVPDYIPIK--RDFQIRGELYAT--------- 134

Query: 204 EMIAVGRKPYANPRNAASGILRRL------NPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
                         N  +GI +R+      +   I   L F    +          QYE 
Sbjct: 135 --------------NQVAGISQRITRKYLNDKKGIGESLRFCCFQILNGRL----NQYET 176

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           L  ++  GF   +     +T   I  Y       +    Y  +G+V K++   LQ
Sbjct: 177 LNYLKKCGFSTPDSYFTNHT-SEIQIYKKNWLERKIFAKYPTNGIVVKINSRKLQ 230


>gi|116514157|ref|YP_813063.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093472|gb|ABJ58625.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 261

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            N       +  L + +  I    K V S +  ++ V TG  ++  R++    +   G  
Sbjct: 156 NNIVYQKLRDGDLAKATEIIDFTPKQVDSRLAGQRFVITGQFRQATRYELTSLIQSHGGK 215

Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S  TD ++ G+  +   K +KA + G  ++  E  + LLQ+
Sbjct: 216 VTGSVSGVTDYLLKGELDHVTGKCKKAAEKGTAVIGYEDLMLLLQK 261


>gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 309

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPG 695
           +   ++ +VFTG L  + R +A   V +LG  V + +++KT  ++           D   
Sbjct: 219 TAFTDEVVVFTGGLASMTRDEAIRLVRKLGGSVGSSVTKKTTYLVTNTKDIDNLHRDEMS 278

Query: 696 SKLEKAQQL-----GVKIMNEEQFLF 716
           +KL KA  L     G+K +NEE FL 
Sbjct: 279 TKLRKAVDLKNKGQGIKCLNEEDFLK 304


>gi|32477333|ref|NP_870327.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica SH 1]
 gi|32447884|emb|CAD77402.1| probable DNA polymerase III polC-type [Rhodopirellula baltica SH 1]
          Length = 355

 Score = 80.8 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 15/88 (17%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----------NPG 695
            +E +K+VFTG LQK+QR +A+   ++ G    + +SRKTD+++VGD             
Sbjct: 265 PLEGRKVVFTGVLQKLQREEAEMLTSRCGGKCQSSVSRKTDLVVVGDPDSRTVQASRTMS 324

Query: 696 SKLEKAQQLG-----VKIMNEEQFLFLL 718
            K   A+QL      ++IM E +FL ++
Sbjct: 325 VKEATARQLAAEGAPLRIMTEHEFLEMI 352


>gi|301111033|ref|XP_002904596.1| replication factor C subunit 1 [Phytophthora infestans T30-4]
 gi|262095913|gb|EEY53965.1| replication factor C subunit 1 [Phytophthora infestans T30-4]
          Length = 770

 Score = 80.8 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 15/119 (12%)

Query: 626 EALLKEVSPSIGRHEKNV-------SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           +  + EV P   + E  +       S  ++ K   F+G L+ + R  A   V   G  V+
Sbjct: 61  DEEMPEVKPEAKKEEGALKKVPAPCSGCLDGKTFAFSGVLESLSREDAVHLVKSCGGSVA 120

Query: 679 AILSRKTDIIIVGD--------NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
             ++R T  +++G           GSK ++A    V+I+ + +F  L+ +  T  +  D
Sbjct: 121 NSITRSTKYLVIGSTLEQGGNVTDGSKYKEAVAKNVRILTQNEFYNLITEAATAQQTQD 179


>gi|218245952|ref|YP_002371323.1| BRCT domain-containing protein [Cyanothece sp. PCC 8801]
 gi|218166430|gb|ACK65167.1| BRCT domain protein [Cyanothece sp. PCC 8801]
          Length = 600

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 60/100 (60%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           E  + EV+P   +      + +  KK+V  G+L ++ R +A+ Y+ + G  +++ LS KT
Sbjct: 500 ETAIAEVTPEESQESSAKENPLSGKKVVIAGSLSQMTREEARGYLQKAGGSLTSSLSSKT 559

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             I++G+ PG K++KA +LGV  + E QF+ LL+  N ++
Sbjct: 560 HYIVIGNAPGDKVKKAHKLGVTQLTETQFMDLLKSANISI 599


>gi|325125846|gb|ADY85176.1| DNA polymerase III, epsilon subunit [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 286

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            N       +  L + +  I    K + S +  ++ V TG  ++  R++    +   G  
Sbjct: 181 NNIVYQKLRDGDLAKATEIIDFTPKQIDSRLAGQRFVITGQFRQATRYELTSLIQSHGGK 240

Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S  TD ++ G+  +   K +KA + G  ++  E  + LLQ+
Sbjct: 241 VTGSVSGVTDYLLKGELDHVTGKCKKAAEKGTAVIGYEDLMLLLQK 286


>gi|327537942|gb|EGF24639.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica WH47]
          Length = 355

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 15/88 (17%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----------NPG 695
            +E +K+VFTG LQK+QR +A+   ++ G    + +SRKTD+++VGD             
Sbjct: 265 PLEGRKVVFTGVLQKLQREEAEMLTSRCGGKCQSNVSRKTDLVVVGDPDSRTVQASRTMS 324

Query: 696 SKLEKAQQLG-----VKIMNEEQFLFLL 718
            K   A+QL      +KIM E +FL ++
Sbjct: 325 VKEATARQLAAEGAPLKIMTEHEFLEMI 352


>gi|317503610|ref|ZP_07961630.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
 gi|315665271|gb|EFV04918.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
          Length = 284

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           P      +N  +    K++V TG L+    R    + +   GA ++  +S++TDI+IVG 
Sbjct: 186 PLSPEEVENKETPFFMKRVVLTGNLETFPARETIAKMLKAYGADINTSISKRTDIVIVGK 245

Query: 693 NPG-SKLEKAQQL-----GVKIMNEEQFLFLLQQYNT 723
             G SK++K ++L      ++++ E + L +++++N 
Sbjct: 246 GAGPSKMQKIEELQAQGHNLRVIEEPELLSIMKEFNI 282


>gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
 gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
          Length = 298

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 14/96 (14%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---- 693
             E +  +   N+ +VFTG L+K+ R  A + V  LG ++   +++ T+ +I+G+N    
Sbjct: 202 EVEIDEDNFFFNRHVVFTGKLEKMIRQDAMQIVVNLGGILDNSVTKSTNYLILGNNDYNA 261

Query: 694 -----PGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
                  SK +KA++L      ++I++E  F  L++
Sbjct: 262 ILKGEKSSKHKKAEKLKLEGQDIEIIDEFTFYDLIE 297


>gi|120599313|ref|YP_963887.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|120559406|gb|ABM25333.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
          Length = 298

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 20/170 (11%)

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A +LAK   S  N+         +   D     +   +     +  +       +I  ++
Sbjct: 131 ALNLAKAAFSLPNYKLATVAKHCNIPLDEAHRAKADAI--AAGRVFMCAAVTLGHINEIK 188

Query: 627 ALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
                       H+    +E   +  + +VFTG L  + R +A E   +LG  + + +S+
Sbjct: 189 PKSAFGKTKGADHKAYPPNEYGELYGQTIVFTGELS-MTRAEAFEAAAELGLEIKSGVSK 247

Query: 684 KTDIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
           KTD ++VG+            SK  KAQ L      ++I++E++F+ L++
Sbjct: 248 KTDYLVVGEQDESLVGPSGISSKQLKAQDLIDEGFDIQILDEDEFMELIE 297


>gi|298252856|ref|ZP_06976650.1| NAD-dependent DNA ligase [Gardnerella vaginalis 5-1]
 gi|297533220|gb|EFH72104.1| NAD-dependent DNA ligase [Gardnerella vaginalis 5-1]
          Length = 196

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 14/90 (15%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------P 694
                N+ +VFTG L+K+ R  A + V  LG V+   ++++T+ +I+GDN          
Sbjct: 106 DGFFYNRHVVFTGKLEKMLRKDAMQIVVNLGGVLDNSVTKQTNYLILGDNDYNAILKDEK 165

Query: 695 GSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
            SK +KA++L      ++I++E  F  LL+
Sbjct: 166 SSKHKKAEKLKLEGQDIEIIDERTFYDLLE 195


>gi|85001193|ref|XP_955315.1| replication factor c-related protein [Theileria annulata strain
           Ankara]
 gi|65303461|emb|CAI75839.1| replication factor c-related protein, putative [Theileria annulata]
          Length = 961

 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 15/92 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--------PGSKL 698
           IE KK VFTG +  I R +A   V +LG +V + +S  T+ ++ G+          G K 
Sbjct: 347 IEGKKFVFTGEMS-IDRLEATFRVKKLGGIVVSAVSGVTNYLVYGEKLEDGRPYQSGVKY 405

Query: 699 EKA------QQLGVKIMNEEQFLFLLQQYNTT 724
           +KA      + L ++++NE+QFL LLQ    +
Sbjct: 406 KKALELNSKKNLNIQLLNEQQFLQLLQSNADS 437


>gi|72042956|ref|XP_797949.1| PREDICTED: similar to replication factor C large subunit
           [Strongylocentrotus purpuratus]
 gi|115960148|ref|XP_001189165.1| PREDICTED: similar to replication factor C large subunit
           [Strongylocentrotus purpuratus]
          Length = 906

 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 11/221 (4%)

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL-GFGDVSVTNLYDSINKR 545
           GK               +    D    + R + +   I++   G    S   L  +    
Sbjct: 173 GKGLASKLAAKVKAGSLVPDTPDREKQKERSRYTEPTIQDTPSGSRQQSRVVLISTKEDE 232

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +    +R   S   +   A+ A   +      +  +       A   +   ++   P  G
Sbjct: 233 KESPTKRVTRSTPTKPPPAKRAPIKSTTKAKLEITSPPRKKEAARGKE--EAMTSPPG-G 289

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +   +     Y++  N           S       K     +     V TG ++   + +
Sbjct: 290 EGEKRRGSAGYKSYLNRE------GPRSLGSREEPKGADGCLSGLTFVLTGVIEYFDKDQ 343

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
            +  V Q G  ++  +S+KT  +++G  PG SK+ K  +  
Sbjct: 344 IKTMVEQHGGRLTTSVSKKTSHLVIGREPGESKVAKVTKFN 384


>gi|299142830|ref|ZP_07035958.1| exonuclease [Prevotella oris C735]
 gi|298575698|gb|EFI47576.1| exonuclease [Prevotella oris C735]
          Length = 284

 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           P      +N  +    K++V TG L+    R    E +   GA ++  +S++TDI+IVG 
Sbjct: 186 PLSPEEVENKETPFFMKRVVLTGNLEMFPARETIAEVLKAYGADINTSISKRTDIVIVGK 245

Query: 693 NPG-SKLEKAQQL-----GVKIMNEEQFLFLLQQYNT 723
             G SK++K ++L      ++++ E + L +++++N 
Sbjct: 246 GAGPSKMQKIEELQAQGHNLRVIEEPELLSIMKEFNI 282


>gi|118397505|ref|XP_001031085.1| BRCT domain containing protein [Tetrahymena thermophila]
 gi|89285407|gb|EAR83422.1| BRCT domain containing protein [Tetrahymena thermophila SB210]
          Length = 1123

 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 11/165 (6%)

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           ++ +       QN   + ++  A   DD++ + +       + +  ++  +  +    V 
Sbjct: 252 SKRVLVKGGQKQNKMIDEDDYDAEEVDDYVEVKKTTSRTKALEEKNLKKIEENKQKQQVS 311

Query: 627 ALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           A   +  P   ++  N    S  +  + +VFTG    I R    + VT +GA  +  +S 
Sbjct: 312 AKKDKAPPQKDKNSSNGNIDSDILAGQTIVFTGDFDGISRDTMSKIVTDMGAKNTGSVSG 371

Query: 684 KTDIIIVG--------DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           KT +++ G           G K + A+Q G KIMN+ QF   L+ 
Sbjct: 372 KTTLLVHGSVLEDGRPPEQGKKYQTAKQKGTKIMNQSQFSDYLKD 416


>gi|33322704|gb|AAQ07086.1|AF496399_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis]
          Length = 116

 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 12/126 (9%)

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            S+E  +F LGI +VG + A+ +A+ + +    A                L  +  +G  
Sbjct: 1   NSVELVLFGLGIDNVGRKAAQLIAQKFKNMSKIASA----------SVQELTAIDTIGMT 50

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           IA+++  ++Q       +  L +       +G   +   +  + K +V TG L    R +
Sbjct: 51  IAESLTAYFQQEEAKKLLTRLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAE 110

Query: 666 AQEYVT 671
             + + 
Sbjct: 111 FTKKLQ 116


>gi|118139511|ref|YP_390933.2| NAD-dependent DNA ligase [Thiomicrospira crunogena XCL-2]
 gi|110744162|gb|ABB41259.2| DNA ligase [Thiomicrospira crunogena XCL-2]
          Length = 312

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 14/85 (16%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GS 696
           E + K    TG L    R + Q+ + + G  VS  +++K D ++VG            G 
Sbjct: 226 EFDGKVFCITGALAYGTRKECQDLILKFGGKVSKGITKKLDYLVVGPVASRDWFNTSYGR 285

Query: 697 KLEKA-----QQLGVKIMNEEQFLF 716
           K+EKA     +  G+KI++EE +  
Sbjct: 286 KIEKAVGYRDEGYGLKIISEEVWRK 310


>gi|302873810|ref|YP_003842443.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307689948|ref|ZP_07632394.1| DNA polymerase III subunit epsilon [Clostridium cellulovorans 743B]
 gi|302576667|gb|ADL50679.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 306

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 74/197 (37%), Gaps = 23/197 (11%)

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             N Y  I   +  ++  F+     +H    +  +LA       N    I+  +   + D
Sbjct: 118 AKNFYRGIENAKLNTVNDFL-GYEFKH-HDALYDALA-----CSNILLNISEELRCKDID 170

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
            +S +    +G +            R I            +I   E+      +++ +VF
Sbjct: 171 EISKLIGVTIGAVDNDDYKPSKAEGRPIKISSRNYCPKKENIY--ERFEKDAFKDEVVVF 228

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL- 704
           TG L  + R +A   V +LG    + +++KT I++           +   +KL KA  L 
Sbjct: 229 TGRLCSMARDEAMRLVRRLGGTAGSSVTKKTTILVTNTKDPKELRKEEMSTKLRKATDLS 288

Query: 705 ----GVKIMNEEQFLFL 717
                ++ +NEE FL +
Sbjct: 289 EKGQNIRFLNEEDFLNI 305


>gi|157413924|ref|YP_001484790.1| hypothetical protein P9215_15911 [Prochlorococcus marinus str. MIT
           9215]
 gi|157388499|gb|ABV51204.1| Hypothetical protein P9215_15911 [Prochlorococcus marinus str. MIT
           9215]
          Length = 249

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 86/235 (36%), Gaps = 55/235 (23%)

Query: 98  LEKIW---NIEDLRKFITRIYRFWQKKDDNS-----------IFFTLEPKIDGTMITIRY 143
           LEK++   + E    F  +  R   +    +              +++PKIDG  I IRY
Sbjct: 31  LEKLFMHVDPES-DYFNQKNSRVLPRLAKENYKEFLGSLLTKTRLSIQPKIDGCAIAIRY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             GKF  A  +    +G DVS+ I+ I  +P  + +      ++RGE+Y +         
Sbjct: 90  INGKFNKAITK----TGFDVSSKIKQIKNVPDCIPIK--RDFQIRGELYAT--------- 134

Query: 204 EMIAVGRKPYANPRNAASGILRRL------NPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
                         N  +GI +R+      +       L+F    +          QYE 
Sbjct: 135 --------------NQVAGISKRITRKYLNDKKGFRESLSFCCFQILNGRL----NQYET 176

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           L  ++  GF   +     +T   I  Y       +    Y  +G+V K++   LQ
Sbjct: 177 LNYLKKCGFSTPDSYFTNHT-SEIQIYKKNWLERKIFTKYPTNGIVIKINSRKLQ 230


>gi|33322833|gb|AAQ07152.1|AF496462_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis]
          Length = 69

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 33/53 (62%)

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++  
Sbjct: 1   LQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKG 53


>gi|254526714|ref|ZP_05138766.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus
           marinus str. MIT 9202]
 gi|221538138|gb|EEE40591.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus
           marinus str. MIT 9202]
          Length = 249

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 40/191 (20%)

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            +++PKIDG  I IRY  GKF  A  +    +G DVS+ I+ I  +P  + +      ++
Sbjct: 74  LSIQPKIDGCAIAIRYINGKFNKAITK----TGFDVSSKIKQIKNVPDCIPIK--RDFQI 127

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL------NPTDITRYLNFFVH 241
           RGE+Y +                       N  +GI +R+      +       L+F   
Sbjct: 128 RGELYAT-----------------------NQVAGISKRITRKYLNDKRGFGESLSFCCF 164

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +          QYE L  ++  GF   +     +T   I  Y       +    Y  +G
Sbjct: 165 QILNGRL----NQYETLNYLKKCGFSTPDSYFTNHT-SEIQIYKKNWLERKIFTKYPTNG 219

Query: 302 LVYKVDEFSLQ 312
           +V K++   LQ
Sbjct: 220 IVIKINSRKLQ 230


>gi|123969095|ref|YP_001009953.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           AS9601]
 gi|123199205|gb|ABM70846.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           AS9601]
          Length = 249

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 104/294 (35%), Gaps = 75/294 (25%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +++ Y D+ Y +  + II D  +         +   F  +    +P+    K   ++ 
Sbjct: 5   LVRDVKYLDEQY-RIGEGIISDDAF-------KQLEKLF--IPVDPEPDYFNQK-NNKLL 53

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
             L K                E+ +KF+  +              +++PKIDG  I IRY
Sbjct: 54  PKLAK----------------ENYKKFLESLL--------TKTRLSIQPKIDGCAIAIRY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             GKF  A  +     G DVS+ I+ I  +P  + +      ++RGE+Y +         
Sbjct: 90  IDGKFNKAITK----KGFDVSSKIKQIKNVPDCIPIK--RDFQIRGELYAT--------- 134

Query: 204 EMIAVGRKPYANPRNAASGILRRL------NPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
                         N  +GI +R+      +   I   L F    +          QYE 
Sbjct: 135 --------------NQVAGISQRITRKYLNDKKGIGESLRFCCFEILNGRL----NQYET 176

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           L  ++  GF   +     +T   I  Y       +    Y  +G+V K++   L
Sbjct: 177 LNYLKKCGFSTPDSYFTNHT-SEIQIYKKNWLEKKIFEKYPTNGIVIKINSRKL 229


>gi|330792427|ref|XP_003284290.1| hypothetical protein DICPUDRAFT_96642 [Dictyostelium purpureum]
 gi|325085743|gb|EGC39144.1| hypothetical protein DICPUDRAFT_96642 [Dictyostelium purpureum]
          Length = 1334

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702
            + +       +G L  ++R +A+  + + G  V+    +K   +IVG   G  KLEKA+
Sbjct: 602 QNCLARYTFFISGVLDSLERDEAENLIKKYGGNVAKSAVKKLTHMIVGTGAGEQKLEKAK 661

Query: 703 QL-GVKIMNEEQFLFLLQQ 720
           ++ GV  ++E+    ++ +
Sbjct: 662 KIRGVVFIDEDGLFEMISK 680


>gi|148986116|ref|ZP_01819102.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|149004079|ref|ZP_01828884.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147757891|gb|EDK64900.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147921830|gb|EDK72957.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799167|emb|CBW31680.1| unnamed protein product [Streptococcus pneumoniae OXC141]
          Length = 307

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692
              +   N           FTG L+++ R +A +    +G +    +++ T+I++VG+  
Sbjct: 208 EEEKAAMNPDHYFYGLYFCFTGKLERMTRKEANKAAALVGGIPEKGVTKHTNILVVGEQD 267

Query: 693 -------NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
                     SK++KAQ L      ++IM E  F+ LL++
Sbjct: 268 WRVVGTDGLSSKMKKAQTLLEKGQDIEIMTENDFIRLLEE 307


>gi|188588313|ref|YP_001920971.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498594|gb|ACD51730.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 309

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 14/86 (16%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPG 695
           +   ++ +VFTG L  + R +A   V +LG  V + +++KT  ++           D   
Sbjct: 219 TAFTDEVVVFTGGLASMTRDEAIRLVRKLGGSVGSSVTKKTTYLVTNTKDIDNLHRDEMS 278

Query: 696 SKLEKAQQL-----GVKIMNEEQFLF 716
           +KL KA  L     G+K +NE  FL 
Sbjct: 279 TKLRKAVDLKNKGQGIKCLNEGAFLK 304


>gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47]
 gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage
           phi2958PVL]
 gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 132]
 gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47]
 gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL]
 gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 306

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 23/171 (13%)

Query: 568 RSLAKYYLSYQ-----NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           + LA+++          F           N        +  + +        F QN    
Sbjct: 129 QDLAEHFDIKNEEYHNAFYDAKVCAKIAYNILKDQDANLNDLVENQNFKYGVFGQNGFIK 188

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            +    ++ V         + +  +  K + FTG L+   R++  + VT +G+V  + + 
Sbjct: 189 KSANKKIELVYN---EELNDKNHILYGKHVCFTGALKGFTRNEIAQTVTNIGSVYDSSVK 245

Query: 683 RKTDIIIVGD----------NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718
           + T+ ++VG+             SK++KA++L      ++I++E  FL LL
Sbjct: 246 KSTNYLVVGNLENLEKTHNYTKSSKIKKAEKLSSEGQDIEILSEMDFLKLL 296


>gi|169609112|ref|XP_001797975.1| hypothetical protein SNOG_07642 [Phaeosphaeria nodorum SN15]
 gi|160701784|gb|EAT85108.2| hypothetical protein SNOG_07642 [Phaeosphaeria nodorum SN15]
          Length = 1019

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
           G       + +     VFTG L+K  R +AQE V + G  V+   S+KT+ +        
Sbjct: 346 GDMPSGSDTCLAGLNFVFTGVLKKWGRTEAQELVKRHGGKVTGAPSKKTNYV-------- 397

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQ 720
              K   LG++ + E+    L+++
Sbjct: 398 ---KIHDLGIQTIEEDGLSMLIEK 418


>gi|294932355|ref|XP_002780231.1| replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239890153|gb|EER12026.1| replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 829

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 14/93 (15%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPG 695
                 K LVFTG L++++R  A       GA V+  +S +T  ++VG           G
Sbjct: 160 EKPFNGKTLVFTGNLERLERDLAVTKAKLAGAKVTTAVSGRTTYLVVGSVLEDGRPIEEG 219

Query: 696 SKLEKAQQL------GVKIMNEEQFLFLLQQYN 722
           SK +K Q+L      G  ++ E +F+  LQ+  
Sbjct: 220 SKFKKTQELRAAGKPGPSLLQESEFIEKLQKAG 252


>gi|126651945|ref|ZP_01724137.1| DNA polymerase III subunit epsilon [Bacillus sp. B14905]
 gi|126591214|gb|EAZ85323.1| DNA polymerase III subunit epsilon [Bacillus sp. B14905]
          Length = 132

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 8/91 (8%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-- 693
                +++     +K++VFTG L  + R +A + V   G  +   ++++TD +I+GD   
Sbjct: 34  FSDPTESLPHPFYHKQIVFTGALSTMTRSEAAKQVKACGGFLQGTVTQQTDFVILGDKRR 93

Query: 694 -PGSKLEKAQQL-----GVKIMNEEQFLFLL 718
              +K  KA+QL      ++I+ E+ FL+L+
Sbjct: 94  GISTKQRKAEQLMNYGEDIQILIEDDFLWLI 124


>gi|301093002|ref|XP_002997350.1| replication factor C subunit, putative [Phytophthora infestans
           T30-4]
 gi|262110748|gb|EEY68800.1| replication factor C subunit, putative [Phytophthora infestans
           T30-4]
          Length = 893

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692
           ++ +     S  ++ K   F+G L+ + R  A   V   G  ++  ++R T  +++G   
Sbjct: 200 ALKKVPAPCSGCLDGKTFAFSGVLESLSREDAVHLVKSCGGSIAISITRSTKYLVIGSTL 259

Query: 693 ------NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
                   GSK ++A    V+I+ + +F  L+ +  T  +  D
Sbjct: 260 EQGGNVTDGSKYKEAVAKNVRILTQNEFYNLITEAATAQQTQD 302


>gi|182418640|ref|ZP_02949917.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237668503|ref|ZP_04528487.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377502|gb|EDT75056.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237656851|gb|EEP54407.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 308

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 30/248 (12%)

Query: 488 KQQLDFFFKSEDPAFSIRIPA--DIFTLQR-RQQTSTTKIENILGFGDVSVTNLYDSINK 544
            +         D  F I   A  DI  L+R  +  +   +            N Y  I  
Sbjct: 68  DEIWKRIKGYFDNGFVIAHNASFDISVLRRTMELYNIEPVSFKYICTMKLSKNFYPQIEN 127

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  ++ RF+      H    +A +LA       N    I+  + + + D +       V
Sbjct: 128 SKLNTVNRFL-GYEFDH-HDALADALA-----CSNILINISKELGNEDIDEICRC----V 176

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQ 662
           G  I     E Y+       +      VS     +     +    +   +VFTG L  + 
Sbjct: 177 GVTIGNVNEEGYKPSSAKGRIFRKSSRVSSCNNSNSLGNPNYDVFKGDTVVFTGRLSSMT 236

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL---GVKI-- 708
           R +A   V +LG    + +++KT I++           +   +K+ KA  L   G KI  
Sbjct: 237 RDEAIRLVRRLGGASGSSVTKKTTILVSNIKDIHELKRNEMSTKMRKAVDLKLMGQKIDF 296

Query: 709 MNEEQFLF 716
           ++E +F+ 
Sbjct: 297 IDENEFIK 304


>gi|308160758|gb|EFO63231.1| Replication factor C, subunit 1 [Giardia lamblia P15]
          Length = 887

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 14/160 (8%)

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G       A  +L     A E  N IAH        I  PL+ +  A  I       +N 
Sbjct: 100 GNLAQEDAADIFLDVFQSAAESLNPIAH--------IERPLIDEPFANLIPA--NTEQNK 149

Query: 623 CAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                     + S+       + + S +     V TG L+ +     + YVT LG  V+ 
Sbjct: 150 REANPYNSRTNASVNYETLRPRGLVSSLSKLIFVRTGNLRTMSDTDFKLYVTNLGGTVTT 209

Query: 680 ILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            +S +T  ++VGD+PG +K+  A+   V+I++E++F  L+
Sbjct: 210 AVSGRTSYLVVGDDPGATKIRDAKAKFVRIISEKEFYNLV 249


>gi|72382264|ref|YP_291619.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           NATL2A]
 gi|72002114|gb|AAZ57916.1| NAD-dependent DNA ligase N-terminus protein [Prochlorococcus
           marinus str. NATL2A]
          Length = 228

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 28/212 (13%)

Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
           R W +    +    LEPKI G++I I+Y  G+      +      +D++  +R++ TIP+
Sbjct: 43  REWLEIFLPNTRIILEPKIIGSIIGIQYINGELNKVINKNS----QDITESVRSLKTIPK 98

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235
            L++     +E++G +Y  KN     N+         + + +N  S           ++ 
Sbjct: 99  SLAIK--NRLEIQGVLYDYKNLSTRKNE-------TEFIDIQNFIS----------KSKR 139

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L F    + + +       ++ LQ+++ L F +    +  N    I  Y    +  +   
Sbjct: 140 LKFCAFQICQCN----INHFQSLQELKHLNFEI-PQTQFTNFISDIEIYIQCWREGKLFT 194

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
            Y  +GLV K++   LQK LGE   S  W  +
Sbjct: 195 SYPTNGLVLKINSRKLQKYLGENNLSIPWAYA 226


>gi|326427870|gb|EGD73440.1| DNA ligase [Salpingoeca sp. ATCC 50818]
          Length = 664

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---DNP 694
           +     +S I + K+VFTGT +   R   +   ++LGA+V + +S KTD++++G      
Sbjct: 154 KTSAATASSIRDLKVVFTGTFESGIRRVVENEASKLGAIVGSSVSSKTDLLVIGGLVRPF 213

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLL 718
           G+K ++A  LGV+++ E+++  ++
Sbjct: 214 GAKEDRASDLGVRVIFEKEWNDMV 237


>gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 326

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 14/98 (14%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                E ++S  + N+  V TG L +  R +A + +  LG +    +++KT+I+I+GDN 
Sbjct: 228 QAKIQEFDISHPLYNQNCVITGILGRFTRSQAMQIIADLGGINQDSVTKKTNILILGDND 287

Query: 695 ---------GSKLEKAQQL-----GVKIMNEEQFLFLL 718
                     +KL++A++L      +KI++E  F  ++
Sbjct: 288 YRAMIKGGISNKLKRARELILKGQDLKIISENVFYDMI 325


>gi|124025816|ref|YP_001014932.1| hypothetical protein NATL1_11091 [Prochlorococcus marinus str.
           NATL1A]
 gi|123960884|gb|ABM75667.1| Hypothetical protein NATL1_11091 [Prochlorococcus marinus str.
           NATL1A]
          Length = 200

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 89/235 (37%), Gaps = 40/235 (17%)

Query: 94  PTLSLEK-IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
             L L+K  ++      +  ++               ++PKIDG  I +RY+ G+ V A 
Sbjct: 2   RLLGLDKDCFS-----SWWAKL--------PEGSTMVVQPKIDGCAIGLRYKYGQLVDAY 48

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            R D     ++   IR I +IP  +  ++   +E+ G +Y   ++   ++ E +      
Sbjct: 49  TRDDS----EIIENIRNINSIPLSIDDSLKVEVELEGVLYSPFSNS-KISIEQLLSNS-- 101

Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ++   N+ S + +             F     + S+         L +++  GF V    
Sbjct: 102 FSKIDNSTSILFKAFQ---------IFCSKSDELSD---------LTQLQNWGFEV-PIT 142

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
            + +    +  ++++            +G+V K +    +  LG    SP W ++
Sbjct: 143 LRTDDPRQVKRWHSQWIKNELFSNLPTNGIVAKCNSSLTKNFLGASPSSPNWALA 197


>gi|213421873|ref|ZP_03354939.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 73

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+     +     
Sbjct: 6   ELWVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGAL-ANAV 64

Query: 187 VRGEVYISK 195
           ++GE+++ +
Sbjct: 65  LQGEIFLQR 73


>gi|168494862|ref|ZP_02719005.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168494874|ref|ZP_02719017.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168495024|ref|ZP_02719167.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575147|gb|EDT95675.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575215|gb|EDT95743.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575301|gb|EDT95829.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
          Length = 307

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692
              +   N           FTG L+++ R +A +    +G +    +++ T+I++VG+  
Sbjct: 208 EEEKAAMNPDHYFYGLYFCFTGKLERMTRKEANKATALVGGIPEKGVTKHTNILVVGEQD 267

Query: 693 -------NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
                     SK++KAQ L      ++IM E  F+ LL++
Sbjct: 268 WRVVGTDGLSSKMKKAQTLLEKGQDIEIMTENDFIRLLEE 307


>gi|168490120|ref|ZP_02714319.1| exonuclease family protein [Streptococcus pneumoniae SP195]
 gi|183571500|gb|EDT92028.1| exonuclease family protein [Streptococcus pneumoniae SP195]
          Length = 307

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692
              +   N           FTG L+++ R +A +    +G +    +++ T+I++VG+  
Sbjct: 208 EEEKAAMNPDHYFYGLYFCFTGKLERMTRKEANKATALVGGIPEKGVTKHTNILVVGEQD 267

Query: 693 -------NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
                     SK++KAQ L      ++IM E  F+ LL++
Sbjct: 268 WRVVGTDGLSSKMKKAQTLLEKGQDIEIMTENDFIRLLEE 307


>gi|159111709|ref|XP_001706085.1| Replication factor C, subunit 1 [Giardia lamblia ATCC 50803]
 gi|157434178|gb|EDO78411.1| Replication factor C, subunit 1 [Giardia lamblia ATCC 50803]
          Length = 890

 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
           + +     V TG L+ +     + YV  LG  V+  +S +T  ++VGD+PG +K+  A+ 
Sbjct: 175 NSLSKLIFVRTGNLRTMSDTDFKLYVANLGGTVTTAVSGRTSYLVVGDDPGVTKIRDAKA 234

Query: 704 LGVKIMNEEQFLFLL 718
             V+I++E++F  L+
Sbjct: 235 KFVRIISEKEFYDLV 249


>gi|68535854|ref|YP_250559.1| hypothetical protein jk0779 [Corynebacterium jeikeium K411]
 gi|68263453|emb|CAI36941.1| hypothetical protein jk0779 [Corynebacterium jeikeium K411]
          Length = 260

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q  R+      +           E ++   I  + +  TG ++   + +  + +   G V
Sbjct: 151 QQKRSPAPWAKVATPDEVPETNEEADIDGPIYGQTVCVTGDVEPYDKGEVWDMIASRGGV 210

Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719
           V+  +++KT ++IVG+  +  SK ++A++L      ++I+  ++FL L++
Sbjct: 211 VAKNVTKKTTMLIVGEWHSMTSKEKRARELQDKGQELQIIGFQEFLQLIK 260


>gi|333030386|ref|ZP_08458447.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
 gi|332740983|gb|EGJ71465.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
          Length = 279

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 7/90 (7%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKL 698
           + N  +   N+K+V TGT Q+  R +  E + QLGA ++  +S +T+ ++ G+  G +KL
Sbjct: 191 QANPQNPFYNQKVVITGTFQR-DRMELAEQIQQLGAKINTSISSRTNFVLKGEKAGPAKL 249

Query: 699 EKAQQL---GVKI--MNEEQFLFLLQQYNT 723
           ++  +L   GV I  + EE+ + +L+++  
Sbjct: 250 KRIHELQSQGVPIQVVEEEKLMKVLEKWGE 279


>gi|260578055|ref|ZP_05845977.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
 gi|258603795|gb|EEW17050.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 260

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGS 696
            E ++   I  + +  TG ++   + +  + +   G VV+  +++KT ++IVG+  +  S
Sbjct: 173 EEADIDGPIYGQTVCVTGDVEPYDKGEVWDMIASRGGVVAKNVTKKTTMLIVGEWHSMTS 232

Query: 697 KLEKAQQLG-----VKIMNEEQFLFLLQ 719
           K ++A++L      ++I+  ++FL L++
Sbjct: 233 KEKRARELQDKGQELQIIGFQEFLQLIK 260


>gi|145552994|ref|XP_001462172.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430010|emb|CAK94799.1| unnamed protein product [Paramecium tetraurelia]
          Length = 972

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
              K++        KN    ++   +V +G L    R K ++++   GA V+  +S KT 
Sbjct: 257 ENKKQIEQEHQPEFKNDPDLLKGLTIVLSGLLNVCSRDKLEQFLKNNGAKVTGSISGKTS 316

Query: 687 IIIVGDN--------PGSKLEKAQQLGVKIMNEEQFLFLL 718
            +IV D          G+K ++A + G KI+ E +    L
Sbjct: 317 YLIVADKLEDGRKGEEGNKFKEATKKGTKIVRESELNDWL 356


>gi|296122435|ref|YP_003630213.1| hypothetical protein Plim_2188 [Planctomyces limnophilus DSM 3776]
 gi|296014775|gb|ADG68014.1| Tetratricopeptide TPR_2 repeat protein [Planctomyces limnophilus
           DSM 3776]
          Length = 442

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 54/96 (56%), Gaps = 14/96 (14%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--------- 693
            ++ ++ +++ FTGTL  +   +A  YV Q G   +  +S++T +++VGD          
Sbjct: 19  STAPLQGERVTFTGTLASMTHREAAGYVEQFGGTFTTQVSQQTTLLVVGDEGWPLEEDGQ 78

Query: 694 PGSKLEKAQQL---G--VKIMNEEQFLFLLQQYNTT 724
           P  KLE A++L   G  +KI++E ++L L++  + +
Sbjct: 79  PSLKLEAARELLERGFPIKILSEPEWLQLIELESPS 114


>gi|72382253|ref|YP_291608.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A]
 gi|72002103|gb|AAZ57905.1| putative NAD-dependent DNA ligase (contains BRCT domain type II)
           [Prochlorococcus marinus str. NATL2A]
          Length = 210

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 40/235 (17%)

Query: 94  PTLSLEK-IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
             L L+K  ++      +  ++               ++PKIDG  I +RY+ G+ V A 
Sbjct: 12  RLLGLDKDCFS-----SWWAKL--------PEGSTMVVQPKIDGCAIGLRYKYGQLVDAY 58

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            R D     ++   IR I +IP  +  ++   +E+ G +Y   ++     +++++     
Sbjct: 59  TRDDS----EIIENIRNINSIPLSIDDSLKVEVELEGVLYTPFSNSKISIEQLLSNSFSE 114

Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
             N            + + + +    F     + S+         L +++  GF V    
Sbjct: 115 IDN------------STSILFKAFQIFCSKSDELSD---------LTQLQNWGFEV-PIT 152

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
            + +    +  ++++            +G+V K +    +  LG    SP W ++
Sbjct: 153 LRTDDPRQVKRWHSQWIKNELFSNLPTNGIVAKCNSSLTKNFLGSSPSSPNWALA 207


>gi|319654072|ref|ZP_08008164.1| hypothetical protein HMPREF1013_04784 [Bacillus sp. 2_A_57_CT2]
 gi|317394265|gb|EFV75011.1| hypothetical protein HMPREF1013_04784 [Bacillus sp. 2_A_57_CT2]
          Length = 91

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 13/88 (14%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNP-------GS 696
             ++ +  VF+G +  + R +A + V   G +    +++ T  ++VG +NP        +
Sbjct: 4   HPLKGEVFVFSGKMHTLLRKEAIKEVLIRGGICEENVTKNTTYLVVGIENPEAIKRNVST 63

Query: 697 KLEKAQQLG-----VKIMNEEQFLFLLQ 719
           KL KA++       +KI+NEE+FL LL+
Sbjct: 64  KLGKAEEYNAAGISIKIINEEEFLNLLR 91


>gi|187932792|ref|YP_001886212.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720945|gb|ACD22166.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
          Length = 309

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 14/86 (16%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPG 695
           +   ++ +VFTG L  + R +A   V +L   V + +++KT  ++           D   
Sbjct: 219 TAFTDEVVVFTGGLASMTRDEAIRLVRKLNGSVGSSVTKKTTYLVTNTKNIDDLHRDEMS 278

Query: 696 SKLEKAQQL-----GVKIMNEEQFLF 716
           +KL KA  L     G+K +NEE FL 
Sbjct: 279 NKLRKAVDLKDKGQGIKFLNEEAFLK 304


>gi|168182135|ref|ZP_02616799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|237793573|ref|YP_002861125.1| DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str.
           657]
 gi|182674639|gb|EDT86600.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|229262587|gb|ACQ53620.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Ba4 str. 657]
          Length = 309

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 81/204 (39%), Gaps = 27/204 (13%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
               N Y SI+  R  ++  F+     +H    +A ++A       N    I+  +   N
Sbjct: 116 KLSKNFYSSIDNARLNTVNNFL-GYKFQH-HDALADAMA-----CSNILLNISKELNSKN 168

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENK 650
            + +S +    VG  +       Y+       +       +P   +   E    +  + +
Sbjct: 169 INEISKL----VGVTLGYVNENGYKPSSTKGRILKRSNRQAPKENKKIIESFNFTAFKEE 224

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKA 701
            +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA
Sbjct: 225 VVVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTCLVTNTKDIEDLNREEMSNKLKKA 284

Query: 702 QQL-----GVKIMNEEQFLFLLQQ 720
             L      +K++NEE FL   ++
Sbjct: 285 IDLKKKGQNIKVLNEEAFLQKCKE 308


>gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
 gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
          Length = 319

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 14/94 (14%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---- 694
            E + +  + NK  VFTG L+K+ R +A + V   G      L++KT+ +I+G+N     
Sbjct: 220 DEFDEAHPLFNKVCVFTGALEKMTRSEAMQAVVNFGGTCKDNLTKKTNFLILGNNSYCST 279

Query: 695 -----GSKLEKAQQL-----GVKIMNEEQFLFLL 718
                 +K +KA+        ++I++E  F  ++
Sbjct: 280 LKDGKSTKQKKAESYKLTGADIEIISENVFYDMI 313


>gi|70933831|ref|XP_738232.1| replication factor C subunit 1 [Plasmodium chabaudi chabaudi]
 gi|56514278|emb|CAH82044.1| replication factor C subunit 1, putative [Plasmodium chabaudi
           chabaudi]
          Length = 368

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 14/79 (17%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSK 697
              NKK V TG  +   R + Q  + + G  V + +S KT  +I G+        + G K
Sbjct: 122 PFINKKFVLTGVFKSFTRDELQSKIKEHGGSVMSAVSSKTHYLIHGEYLEDGRLYSEGKK 181

Query: 698 LEKAQQLG------VKIMN 710
            +KA +L       +KI+N
Sbjct: 182 YQKAYELSKQPKTIIKILN 200


>gi|299541821|ref|ZP_07052144.1| DNA polymerase III [Lysinibacillus fusiformis ZC1]
 gi|298725559|gb|EFI66200.1| DNA polymerase III [Lysinibacillus fusiformis ZC1]
          Length = 110

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 8/86 (9%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSK 697
           +N++    NK++VFTG L  + R +A + V   G  +   +++ TD +++G+      +K
Sbjct: 17  ENLTHPFYNKQIVFTGALSTMTRSEAAKQVKAYGGYLQGAVTQHTDFVVLGNKRRGISAK 76

Query: 698 LEKAQQL-----GVKIMNEEQFLFLL 718
             KA+QL      ++++ E+ FL+L+
Sbjct: 77  QHKAEQLIRQGQDIQMLIEDDFLWLI 102


>gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
          Length = 306

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 84/252 (33%), Gaps = 40/252 (15%)

Query: 488 KQQLDFFFKSEDPAFSIRIPA--DIFTLQR-RQQTSTTKIENILGFGDVSVTNLYDSINK 544
            +  +      D    I   A  DI  L++  +       +           N Y  I  
Sbjct: 68  DKVWEKIKHYFDGNLVIAHNASFDISVLRKTAELYDIDLPKFKYICTMKLSKNFYRGIEN 127

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN-NIIAHNNDDWLSLIRVPL 603
            +  ++  F                L   +  +      +  + I  N    L    +  
Sbjct: 128 AKLNTVNDF----------------LGYEFKHHDALYDALACSNILLNIAAELKCDDIDE 171

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGT 657
           +  ++  +I            ++ +  + S  I   +K        +   +N+ +VFTG 
Sbjct: 172 ISKLVGVSIGTVDGCEYKPSRIKGITIKTSNRIYVPKKRSVFKRLKTDAYKNEVVVFTGR 231

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQLGVK- 707
           L  + R +A   V  LG    + ++RKT I++           +   +KL++A  L +K 
Sbjct: 232 LDSMPRDEAMGLVRVLGGTTGSSVTRKTTILVTNMKDAKDLRREEMSTKLKRAVDLNIKG 291

Query: 708 ----IMNEEQFL 715
                +NE++FL
Sbjct: 292 QNIRFLNEDEFL 303


>gi|153938164|ref|YP_001389626.1| DNA polymerase III subunit epsilon [Clostridium botulinum F str.
           Langeland]
 gi|152934060|gb|ABS39558.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. Langeland]
 gi|295317718|gb|ADF98095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. 230613]
          Length = 309

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 80/204 (39%), Gaps = 27/204 (13%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
               N Y +I+  R  ++  F+     +H    +A ++A       N    I+  +   +
Sbjct: 116 KLSKNFYSNIDNARLNTVNNFL-GYKFKH-HDALADAMA-----CSNILINISKELNSKD 168

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENK 650
            + +S +    +G  +       Y+       +       +P   +   E    +  + +
Sbjct: 169 INEISKL----IGVTLGYVNENGYKPSSTKGRILKRSNRQAPKENKKIIESFNFTSFKEE 224

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKA 701
            +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA
Sbjct: 225 VVVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKA 284

Query: 702 QQL-----GVKIMNEEQFLFLLQQ 720
             L      +K +NEE FL   ++
Sbjct: 285 IDLKKKGQNIKFLNEEAFLQKCKE 308


>gi|148378258|ref|YP_001252799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 3502]
 gi|148287742|emb|CAL81808.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
          Length = 309

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 80/204 (39%), Gaps = 27/204 (13%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
               N Y +I+  R  ++  F+     +H    +A ++A       N    I+  +   +
Sbjct: 116 KLSKNFYSNIDNARLNTVNNFL-GYKFKH-HDALADAMA-----CSNILINISKELNSKD 168

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENK 650
            + +S +    +G  +     +  +       +       +P   +   E    +  + +
Sbjct: 169 INEISKL----IGVTLGYVNEDGCKPSSIKGRILKRSNRQAPRENKKIIESFNFTAFKEE 224

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKA 701
            +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA
Sbjct: 225 VVVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKA 284

Query: 702 QQL-----GVKIMNEEQFLFLLQQ 720
             L      +K +NEE FL   ++
Sbjct: 285 IDLKKKGQNIKFLNEEAFLQKCKE 308


>gi|226947476|ref|YP_002802567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
 gi|226841365|gb|ACO84031.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
          Length = 309

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-------- 691
           E    +  + + +VFTG L  + R++A   V +L   V + +++KT  ++          
Sbjct: 214 ESFNFTAFKEEVVVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLN 273

Query: 692 -DNPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
            +   +KL+KA  L      +K +NEE FL   ++
Sbjct: 274 REEMSNKLKKAIDLKKKGQNIKFLNEEAFLQKCKE 308


>gi|153933783|ref|YP_001382659.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935123|ref|YP_001386211.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           Hall]
 gi|152929827|gb|ABS35327.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 19397]
 gi|152931037|gb|ABS36536.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. Hall]
          Length = 309

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-------- 691
           E    +  + + +VFTG L  + R++A   V +L   V + +++KT  ++          
Sbjct: 214 ESFNFTAFKEEVVVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLN 273

Query: 692 -DNPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
            +   +KL+KA  L      +K +NEE FL   ++
Sbjct: 274 REEMSNKLKKAIDLKKKGQNIKFLNEEAFLQKCKE 308


>gi|170758900|ref|YP_001785582.1| DNA polymerase III subunit epsilon [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405889|gb|ACA54300.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 309

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 14/95 (14%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-------- 691
           E    +  + + +VFTG L  + R +A   V +L   V + ++++T  ++          
Sbjct: 214 ENFNFTAFKEEVVVFTGRLASMTRDEAIILVRKLNGTVGSSVTKRTTYLVTNTNDIEDLN 273

Query: 692 -DNPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
            +   +KL+KA  L      +K +NEE FL   ++
Sbjct: 274 REEMSNKLKKATDLRKKGQNIKFLNEEAFLQKCKE 308


>gi|325289205|ref|YP_004265386.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964606|gb|ADY55385.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 410

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI------QRHKAQEYVTQLGA 675
              +  ++     +    E       + K + FTGTLQ +       R +A     + G 
Sbjct: 302 QEELNQMIITGKTNTSTREFYKKD-CKGKSVCFTGTLQTMKEGRPLTREEAHALALEYGL 360

Query: 676 VVSAILSRKTDIIIV--GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++ + +++  D ++    D+   K +KA+Q  V IM E+ F  +L
Sbjct: 361 IIKSGVTKDLDFLVAADSDSMSGKAKKARQYNVNIMAEQAFWNML 405


>gi|227487575|ref|ZP_03917891.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092557|gb|EEI27869.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 310

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 15/103 (14%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            VS      +   S  +  + +VFTGTL++ +R   Q+ V+ +G +    L++KT +++V
Sbjct: 206 HVSAEALIEQYGNSPALVGEHVVFTGTLKRGKRTDVQQLVSAIGGIADKSLTKKTTLLVV 265

Query: 691 GD----------NPGSKLEKAQQLG-----VKIMNEEQFLFLL 718
           G           +  SKL KA +L      +++++EE+F   L
Sbjct: 266 GILDPRRWVEGCSGSSKLLKATKLRESGSPIEVISEEEFFNRL 308


>gi|297518131|ref|ZP_06936517.1| NAD-dependent DNA ligase LigB [Escherichia coli OP50]
          Length = 170

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 62/178 (34%), Gaps = 17/178 (9%)

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
           P   +  +         C  Q + RL    ++    ++G+G+       ++         
Sbjct: 2   PPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIGEAGWRALHQTHR------- 54

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH----V 562
              IF+       +  +++N  G        L+   N  R     R++ ++GI      +
Sbjct: 55  FEHIFS---WLLLTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAAL 111

Query: 563 GAEIARSLAKYYLSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            A   RS ++   S + F Q++       A    +W    ++  +G  +A   +  ++
Sbjct: 112 NASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFE 169


>gi|224372066|ref|YP_002606231.1| predicted type III DNA polymerase PolC [Desulfobacterium
           autotrophicum HRM2]
 gi|223694785|gb|ACN18067.1| predicted type III DNA polymerase PolC [Desulfobacterium
           autotrophicum HRM2]
          Length = 290

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 15/94 (15%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------- 692
           E N   E+  + +VFTG L  I R  A      +G  V+  +S+K D ++VGD       
Sbjct: 192 EGNPEGELYGQSVVFTGALS-IPRKDAAAMAASIGCSVAPTVSKKIDYLVVGDQDASRLA 250

Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
             +  SK  KA++L      ++I+ E  F  L+ 
Sbjct: 251 GKDKSSKHIKAEKLIASGVQIRILKESDFKELVD 284


>gi|313124719|ref|YP_004034978.1| DNA polymerase iii polc-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312281282|gb|ADQ62001.1| DNA polymerase III PolC-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 298

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 50/108 (46%), Gaps = 14/108 (12%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
             +   + +    + +       + +VFTG L+++ R  A + V  LG ++   +++ T+
Sbjct: 189 KGIDIGAITATTDDIDEDGFFYGRHVVFTGKLERMARKDAMQTVVNLGGILDNSVNKNTN 248

Query: 687 IIIVGDN---------PGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
            +I+G+N           SK +KA++L      + I++E  F  ++  
Sbjct: 249 YLILGNNDYNAVLHGEKSSKHKKAEKLKLEGQDIDIIDEFTFYDIIND 296


>gi|304311282|ref|YP_003810880.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma
           proteobacterium HdN1]
 gi|301797015|emb|CBL45228.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma
           proteobacterium HdN1]
          Length = 297

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 15/97 (15%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
            R E N   E+  + LVFTG L+ + R +A      +G  V   +++KT I++VGD   S
Sbjct: 196 VRREGNPQGELTGEILVFTGQLE-MSRQEAANIAASVGCEVVPSVTKKTTILVVGDQDIS 254

Query: 697 KLE---------KAQQ-----LGVKIMNEEQFLFLLQ 719
           KL          KA++     L ++I+ E  F+ L++
Sbjct: 255 KLAGHEKSAKHRKAEELISMGLSIRILGESDFMELVK 291


>gi|163735140|ref|ZP_02142576.1| Exonuclease [Roseobacter litoralis Och 149]
 gi|161391598|gb|EDQ15931.1| Exonuclease [Roseobacter litoralis Och 149]
          Length = 287

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 18/192 (9%)

Query: 543 NKRRNISLERFIFS-LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
              R+ S+     + L    V        A+      N  + I +   H+N   L   + 
Sbjct: 95  QAARHWSVPPVTCTWLDSARVARRTWEECAQRGYGLANVCKLIGHTFEHHNA--LEDAKA 152

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             V  + A     F  +       + +           + N    +  + +VFTG L+ I
Sbjct: 153 SGVVLLAAMNKSGFDLDRWLTRVTQPIDPSSRDGRITRDGNPDGALAGEVVVFTGALE-I 211

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-----PG----SKLEKAQQL---GVK-- 707
            R +A +    +G  V A +++KT +++VGD       G    SK  KA+ L   GV   
Sbjct: 212 PRREAADLAASIGCSVGASVTKKTTLLVVGDTDVARLAGHAKSSKHRKAEDLAAKGVPIR 271

Query: 708 IMNEEQFLFLLQ 719
           I+ E  F  L++
Sbjct: 272 IIRETDFRELVE 283


>gi|124025829|ref|YP_001014945.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           NATL1A]
 gi|123960897|gb|ABM75680.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           NATL1A]
          Length = 228

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 91/212 (42%), Gaps = 28/212 (13%)

Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
           R W +    +    LEPKI G++I I+Y  G+      +      +D++  +R++ TIP+
Sbjct: 43  REWLEIFLPNTRIILEPKIIGSIIGIQYINGELNKVINKNS----QDITESVRSLKTIPK 98

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235
            L++     +E++G +Y +KN     N+         + + +N  S           ++ 
Sbjct: 99  SLAIK--NRLEIQGVLYDNKNLSTRKNE-------TEFIDIQNFIS----------KSKR 139

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L F    + + +       ++ LQ+++ L F +    +  N    I  Y    +  +   
Sbjct: 140 LKFCAFQICQCN----INHFQSLQELKHLNFEI-PQTQFTNFISDIEIYLQCWREGKLFT 194

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
            Y  +GLV K++   LQK LG+   S  W  +
Sbjct: 195 SYPTNGLVLKINSRKLQKYLGKNNLSIPWAYA 226


>gi|406360|gb|AAD12433.1| homology to DNA ligase M36417 [Mycoplasma genitalium]
          Length = 98

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           D     L D+I   +   + R +  LGI+HVG  +A++LA ++           NI A  
Sbjct: 6   DKLFNKLVDNIENSKQKGMARLLTGLGIKHVGNVLAKNLANHF----------KNIKALQ 55

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           +    +LI +  VG  +A+++  ++ +P ++  +E 
Sbjct: 56  HASLENLISLNDVGITVAESLYNWFHDPNHLQLIEQ 91


>gi|213621265|ref|ZP_03374048.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
          Length = 50

 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
          +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    P
Sbjct: 1  MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRP 50


>gi|68486652|ref|XP_712820.1| hypothetical protein CaO19.6891 [Candida albicans SC5314]
 gi|46434235|gb|EAK93651.1| hypothetical protein CaO19.6891 [Candida albicans SC5314]
          Length = 688

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           +  + R  A++   Q GA V+  +S KT ++++G + G SK++K +Q  +K ++E  F+ 
Sbjct: 1   MPNLDRGTAEQTAKQYGAKVTKSISGKTSLVVLGADAGPSKVQKIKQHKIKAIDEAGFIK 60

Query: 717 LLQ 719
           LL+
Sbjct: 61  LLE 63


>gi|168177595|ref|ZP_02612259.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
 gi|182670548|gb|EDT82522.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
          Length = 309

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 80/204 (39%), Gaps = 27/204 (13%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
               N Y +I+  R  ++  F+     +H    +A ++A       N    I+  +   +
Sbjct: 116 KLSKNFYSNIDNARLNTVNNFL-GYKFKH-HDALADAMA-----CSNILINISKELNSKD 168

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENK 650
            + +S +    +G  +     + Y+       +       +P   +   E    +  + +
Sbjct: 169 INEISKL----IGVTLGYVNEDGYKPSSTKGRILKRSNRQAPRENKKTIESFNFTAFKEE 224

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKA 701
            +VFTG L  + R++    V +L   V + +++KT  ++           +   +KL+KA
Sbjct: 225 VVVFTGGLASMTRNEVMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKA 284

Query: 702 QQL-----GVKIMNEEQFLFLLQQ 720
             L      +K +NEE FL   ++
Sbjct: 285 IDLKKKGQNIKFLNEEAFLQKCKE 308


>gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 405

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697
           I   + V TG    + + +  +Y+   G  V++ +S  T+ +IVG  P         GSK
Sbjct: 314 ITGMRFVLTGIFTLMPKDEIVDYIETNGGKVTSAVSGVTNYLIVGSEPEPAWKHGNYGSK 373

Query: 698 LEKAQQL------GVKIMNEEQFLFLLQQYNT 723
           +EKA  L       +  + EE F+      N+
Sbjct: 374 IEKALSLISENNKHILFIKEEDFISFFASENS 405


>gi|328463820|gb|EGF35363.1| DNA polymerase III PolC [Lactobacillus helveticus MTCC 5463]
          Length = 210

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
           +HN      +  V  +   +     E +++   +    +       +    + + ++   
Sbjct: 71  SHNLKAAEDIKSVEEIYLNLQTNFKERFKSVNELQPKSSKFTSQDIAGDSTKNDKNNIFY 130

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---NPGSKLEKAQQL- 704
           +K++  TG L    R +  + +  +G        + TD  IVG    N   KLEKA++L 
Sbjct: 131 DKRVSATGKLNAYTRREVGQMINDIGGHFQMNPGKTTDYFIVGKLKGNTSHKLEKAEKLP 190

Query: 705 GVKIMNEEQFLFLLQQYN 722
            VKI++E+ FL ++  Y 
Sbjct: 191 NVKIIHEDDFLDMVAGYE 208


>gi|406012|gb|AAD10575.1| Significant homology to DNA ligase M74792 [Mycoplasma genitalium]
          Length = 60

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 26 QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            I  +D  YY  S+P+I D EYD L +    +    PDL +    + P  +
Sbjct: 1  NLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQI---DSPTQR 49


>gi|149911915|ref|ZP_01900514.1| DNA ligase [Moritella sp. PE36]
 gi|149805008|gb|EDM65036.1| DNA ligase [Moritella sp. PE36]
          Length = 189

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 15/169 (8%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+  L I   G  I R++   Y   +      +  +   +D+ + L  +P +   + +
Sbjct: 26  PRFVVPLSISKNGISI-RTVDTRYGDIRYVKANWD--LYATDDEVIQLKDLPYIKQKLEE 82

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-----NKKLVFTGTLQKIQRHK 665
              E ++    +    A        I R    +   +      + ++  TGTL  I R  
Sbjct: 83  W--EEFKLNGKVAHERAKTILKQEDIEREYSTLDEILTTINMTDIRVALTGTLP-IPRAD 139

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKAQQLGVKIMN 710
           A+  +   GA+V   + ++T  + +G+       SK++KA  LGVKI+ 
Sbjct: 140 AKSLLESHGAIVMGSVGKQTSFLFMGNTGRHEITSKMKKAHDLGVKIIT 188


>gi|124801451|ref|XP_001349697.1| replication factor C subunit 1, putative [Plasmodium falciparum
           3D7]
 gi|3845304|gb|AAC71968.1| replication factor C subunit 1, putative [Plasmodium falciparum
           3D7]
          Length = 904

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 14/77 (18%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSK 697
              N+K V TG  +   R + Q  + + G  V   +S KT+ ++ G+        N G K
Sbjct: 212 PFHNQKFVITGVFKNFTRDELQSKIKEHGGSVMTAVSTKTNYLVHGEYLEDGRLFNEGRK 271

Query: 698 LEKAQQL------GVKI 708
             KA +L       +KI
Sbjct: 272 YTKAFELQQQNKSNIKI 288


>gi|11999114|gb|AAG43050.1|AF139827_1 replication factor C subunit 1 [Plasmodium falciparum]
          Length = 904

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 14/77 (18%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSK 697
              N+K V TG  +   R + Q  + + G  V   +S KT+ ++ G+        N G K
Sbjct: 212 PFHNQKFVITGVFKNFTRDELQSKIKEHGGSVMTAVSTKTNYLVHGEYLEDGRLFNEGRK 271

Query: 698 LEKAQQL------GVKI 708
             KA +L       +KI
Sbjct: 272 YTKAFELQQQNKSNIKI 288


>gi|68486597|ref|XP_712849.1| hypothetical protein CaO19.14180 [Candida albicans SC5314]
 gi|46434265|gb|EAK93680.1| hypothetical protein CaO19.14180 [Candida albicans SC5314]
          Length = 688

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           +  + R  A++   Q GA V+  +S KT ++++G + G SK++K +Q  +K ++E  F+ 
Sbjct: 1   MPNLDRGTAEQTAKQYGAKVTKSISGKTSLVVLGTDAGPSKVQKIKQHKIKAIDEAGFIK 60

Query: 717 LLQ 719
           LL+
Sbjct: 61  LLE 63


>gi|153213490|ref|ZP_01948801.1| DNA ligase [Vibrio cholerae 1587]
 gi|124115954|gb|EAY34774.1| DNA ligase [Vibrio cholerae 1587]
          Length = 124

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQ 662
             +AQ I +F+         +  +K            E   + +++N K+  TGTL  + 
Sbjct: 13  PYVAQRIEDFHSGKNKQKEAQRNIKLEDIEREFASISEVLDTIKLDNLKVAITGTLP-LP 71

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-----KLEKAQQLGVKIMN 710
           R  A+  +   GA+V   ++++T  + +G N G      K++KA  LGVKI+ 
Sbjct: 72  RADARALLESKGAIVVGSVNKQTSFLFMG-NTGRYEITEKMKKAHSLGVKIIT 123


>gi|309810273|ref|ZP_07704115.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308435765|gb|EFP59555.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 534

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 15/133 (11%)

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG +I     + +    +I         ++      + + S  +  + +VFTG L  +
Sbjct: 179 ESVGTVIGHMSADQFTGSVSIATARGGSAALALPDANPDADPSGYLYGRTVVFTGALMSM 238

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPGS---------KLEKAQQL-----GV 706
            R  A + V   G   +   ++KT+++++GD NP S         K  KA  L      +
Sbjct: 239 TRQMAWDAVADAGGQPAPTTTKKTNVLVIGDFNPASLRPRANVSGKAAKAFALQDKGQDI 298

Query: 707 KIMNEEQFLFLLQ 719
           ++M E  FL +L 
Sbjct: 299 ELMTEADFLQVLD 311


>gi|227892034|ref|ZP_04009839.1| possible DNA polymerase III subunit epsilon [Lactobacillus
           salivarius ATCC 11741]
 gi|227866144|gb|EEJ73565.1| possible DNA polymerase III subunit epsilon [Lactobacillus
           salivarius ATCC 11741]
          Length = 95

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 14/88 (15%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGS 696
             +NK +VFTG+LQ + R  A E +   G +V   +S++TD +++          +    
Sbjct: 8   TFKNKCVVFTGSLQSMLRKDAIEKINAAGGIVKNYVSKETDYLVIAPRQLDMFEEERKSK 67

Query: 697 KLEKAQQLG-----VKIMNEEQFLFLLQ 719
           K   A+++      +KI++EE+FL +L+
Sbjct: 68  KQIAAEKINMNGGEIKIISEEKFLSMLK 95


>gi|169830139|ref|YP_001700297.1| DNA polymerase III [Lysinibacillus sphaericus C3-41]
 gi|168994627|gb|ACA42167.1| DNA polymerase III [Lysinibacillus sphaericus C3-41]
          Length = 126

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 8/86 (9%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSK 697
           ++ S    +K++VFTG L K+ R +A ++V   G  +   ++++TD II+GD      +K
Sbjct: 33  ESPSHPFYHKQIVFTGALSKMTRSEAAKHVKACGGFLQGTVTQQTDFIILGDKRRGISTK 92

Query: 698 LEKAQQL-----GVKIMNEEQFLFLL 718
             KA+QL      ++I+ E  FL+++
Sbjct: 93  QRKAEQLINLGQDIQILIESDFLWII 118


>gi|308177075|ref|YP_003916481.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307744538|emb|CBT75510.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 333

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 25/190 (13%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW---LSLIRVPLVGDII------A 609
           I +    +A SLA  +       +     +    D +   LSL +    GD +      A
Sbjct: 144 IENHHEALADSLACAWAMIDIAQRSGRQSVLETADHYGVRLSLTQSWQPGDELSRATRDA 203

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q  +          A     +E          + S  +  + +VFTG L  + R KA+E 
Sbjct: 204 QGWLAAGNQMPPQDAFNNWPQEGPNPDPNQNADPSHPLFGQTMVFTGNLS-MPRPKAKEL 262

Query: 670 VTQLGAVVSAILSRKTDIIIVGDN------PGSKLE-KAQ------QLG--VKIMNEEQF 714
             + GA  ++ ++R T  ++VGD          +L  KA+      + G  V I++E +F
Sbjct: 263 AAEHGAQTASRVTRATTALVVGDGFVPQDLANGRLTNKAKHVLRLREKGQRVSIISEGEF 322

Query: 715 LFLLQQYNTT 724
           + ++  +  T
Sbjct: 323 MQMVGGFGLT 332


>gi|167519801|ref|XP_001744240.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777326|gb|EDQ90943.1| predicted protein [Monosiga brevicollis MX1]
          Length = 613

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP-GSKLEKAQQLGV 706
             +VFTGT     R + +      G  V   +S  TD+++VG   NP G+K++ AQ  GV
Sbjct: 256 LTVVFTGTFTGGTRKEIEAQAVAAGHHVVGKVSGNTDVLVVGGAKNPQGAKVDDAQAKGV 315

Query: 707 KIMNEEQF 714
           K+++E Q+
Sbjct: 316 KVLSEPQW 323



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---DNPGSK 697
           K   + +  + +VFTGT +   R + +E     G  V   +S K D+++VG   D  G+K
Sbjct: 3   KGAGATLPVQTVVFTGTFEGGNRKEVEEAARANGFRVVGKISDKVDLLVVGGVQDPHGAK 62

Query: 698 LEKAQQLGVKIMNEEQFLF 716
              A   G+ I++E+ +  
Sbjct: 63  WADASSRGITILSEDAWRA 81



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---DNPGSKLEKAQQLGVKI 708
           +VFTGT    +R   +    + G  V++ +S  T +++VG   D  G+K++ A + G  +
Sbjct: 148 VVFTGTFAGGKRQVIENQAREAGYQVASKVSGNTHVLVVGGVKDPQGAKVDDAHRHGALV 207

Query: 709 MNEEQFLFLLQ-QYNTTLRIHDD 730
           + E Q+  +++ + N   +   D
Sbjct: 208 VTEPQWEEMVRNKANDPAKPAKD 230


>gi|171676372|ref|XP_001903139.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936252|emb|CAP60911.1| unnamed protein product [Podospora anserina S mat+]
          Length = 676

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLE 699
              ++  K+  +GT   + +   +     +GA VS  ++  T  ++  +     P +K+ 
Sbjct: 15  EPPLDGCKIALSGTFAGMTQSAVKAKAEAVGATVSTAVTEDTTHLVATEADFNKPSAKVT 74

Query: 700 KAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           KAQ LG+ I++  ++L L +Q N+  +  +DD
Sbjct: 75  KAQTLGIPIVSF-EWLSLSEQKNS--KQAEDD 103


>gi|255074155|ref|XP_002500752.1| predicted protein [Micromonas sp. RCC299]
 gi|226516015|gb|ACO62010.1| predicted protein [Micromonas sp. RCC299]
          Length = 669

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 643 VSSEIENKKLVFTGTLQKIQ--------RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
            ++ +  K +V TG   ++         + +A+  +   G  V+  +S +TD+++VG  P
Sbjct: 515 TANCLAGKTVVLTGVFPQLGGGQGLDLGKARARAMIESFGGRVTGSVSGRTDVLLVGKEP 574

Query: 695 G-SKLEKAQ-QLGVKIMNEEQFLFLLQ 719
           G SK+ KA+ Q G  +++ E    LL 
Sbjct: 575 GMSKVTKARNQPGCMVLSLENLCELLN 601


>gi|325188879|emb|CCA23408.1| replication factor C subunit putative [Albugo laibachii Nc14]
          Length = 774

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG------ 691
                  + +       +G  +   R      +   G  ++  ++R T+ +++G      
Sbjct: 93  ERPAPRPNCLNGTTFALSGIFENCSRDDCIHLIKVCGGSITNSVTRNTNYLVLGTKLENG 152

Query: 692 --DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
                  K + A +  V+I+++     L+++   T
Sbjct: 153 NDPKTSMKYKDAIEKNVQIISQADLYDLIKEAPET 187


>gi|322804522|emb|CBZ02073.1| putative DNA polymerase III epsilon chain [Clostridium botulinum
           H04402 065]
          Length = 309

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 80/204 (39%), Gaps = 27/204 (13%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
               N Y +I+  R  ++  F+     +H    +A ++A       N    I+  +   +
Sbjct: 116 KLSKNFYSNIDNARLNTVNNFL-GYKFKH-HDALADAMA-----CSNILINISKELNSKD 168

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENK 650
            + +S +    +G  +       Y+       +       +P   +   E    +  + +
Sbjct: 169 INEISKL----IGVTLGYVNENGYKPSSTKGRILKRSNRQAPKENKKIIESFNFAAFKEE 224

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKA 701
            +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA
Sbjct: 225 IVVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTCLVTNTKDIEDLNREEMSNKLKKA 284

Query: 702 QQL-----GVKIMNEEQFLFLLQQ 720
             L      +K +NEE FL   ++
Sbjct: 285 IDLKKKGQNIKFLNEEAFLQKCKE 308


>gi|170755669|ref|YP_001779899.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
 gi|169120881|gb|ACA44717.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
          Length = 309

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 80/204 (39%), Gaps = 27/204 (13%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
               N Y +I+  R  ++  F+     +H    +A ++A       N    I+  +   N
Sbjct: 116 KLSKNFYSNIDNARLNTINNFL-GYKFKH-HDALADAMA-----CSNILLNISKELNSKN 168

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENK 650
            + +S +    +G  +       Y+       +       +P   +   E    +  + +
Sbjct: 169 INEISKL----IGVTLGYVNENGYKPSSTKGRILKRSNRQAPRENKKIIESFNFTAFKEE 224

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKA 701
            +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA
Sbjct: 225 IVVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTCLVTNTKDIEDLNREEMSNKLKKA 284

Query: 702 QQL-----GVKIMNEEQFLFLLQQ 720
             L      +K +NEE FL   ++
Sbjct: 285 IDLKKKGQNIKFLNEEAFLQKCKE 308


>gi|326795140|ref|YP_004312960.1| hypothetical protein Marme_1869 [Marinomonas mediterranea MMB-1]
 gi|326545904|gb|ADZ91124.1| hypothetical protein Marme_1869 [Marinomonas mediterranea MMB-1]
          Length = 286

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 26/154 (16%)

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-- 648
            NDD  S   + LV   + Q      Q   +   ++ L K    +           +   
Sbjct: 133 RNDDLFSTFPINLVVKKMEQLEQSVSQETMSEELLQYLKKVSGANFCETGSVEVHPLAFI 192

Query: 649 ----------NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG------- 691
                     N  +V +G      R   ++     G  +   +S+KTD ++ G       
Sbjct: 193 EDEIDSINHLNSSIVVSGEFDMGSRDDVKDIAIGRGYRLLGSVSKKTDYLVFGSKVSPNW 252

Query: 692 --DNPGSKLEKAQQLG-----VKIMNEEQFLFLL 718
             +N G K+EKA +L      +KI++E Q++  L
Sbjct: 253 GANNFGGKIEKAVKLKLEGYPIKIISESQWISFL 286


>gi|154499224|ref|ZP_02037602.1| hypothetical protein BACCAP_03219 [Bacteroides capillosus ATCC
           29799]
 gi|150272064|gb|EDM99290.1| hypothetical protein BACCAP_03219 [Bacteroides capillosus ATCC
           29799]
          Length = 370

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 65/398 (16%), Positives = 120/398 (30%), Gaps = 75/398 (18%)

Query: 28  ISYHDDCYYQYSKPIILDSEY---DALKRRCDAIAHAFPD-------LARSEDPNGPLNK 77
           I+      Y   +PI+ D+EY   D   +        +P         +    P   L +
Sbjct: 9   IARWA---YSVGQPIMTDAEYTVLDRAMK------AKYPQNPYCKRSWSSDPCPVALLKE 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            G    +           LS +K  +I+ L   I     +      +S+ +    KIDG 
Sbjct: 60  FGYPSLIKAV-------VLS-DKTESIQSLNSLIEVRTAYEAMHAKHSVSY----KIDGW 107

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I   Y  G+ +    RG      D SA     P +P+ +       + V  E  +   +
Sbjct: 108 NIQASYYNGELINIQTRGRASDAMDASAVA---PLLPKQIPE--MGRVLVVMECSVPDAE 162

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F    +           + R A S  L   NP     ++    HG+  ++ +      + 
Sbjct: 163 FAWFKETF------GVTSQRGAVSTALA--NPEKCLSHIAIHAHGVRCSNRV-----SDK 209

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
              ++  GF V         +  ++         +       DGLV +          GE
Sbjct: 210 FDLLKSWGFQV-PMYAWVQNYQELMDQVKAFSDYKEQYGVPTDGLVVE----------GE 258

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
              + R + +    E    + +       G    +     + P+ +  ++       N  
Sbjct: 259 STNALR-ICAW--EEPIYRSFVTGYAESYGPHS-IAVQCTIYPIKLPNSVQRQLPATNLS 314

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
            I  L            +R G  V  + A   I  + +
Sbjct: 315 RILSLS-----------LRPGYPVAFRIASSSIADIDE 341


>gi|238898092|ref|YP_002923773.1| NAD-dependent DNA ligase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465851|gb|ACQ67625.1| NAD-dependent DNA ligase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 294

 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 32/145 (22%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           ++I+     ++L    +   G  I   +V+ +     I  +                   
Sbjct: 160 DSIVTEEEREFLRKTLISFTGCDIESGVVDGFATQLPIDIINKF---------------- 203

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPG 695
            E   K +  TG     +R   ++ + + GA V   +++K D +IVG          + G
Sbjct: 204 -EASGKTVCLTGEFIYGKRSVCEQEIIRQGANVIGNVTKKLDYLIVGTMSSKNWRYTSHG 262

Query: 696 SKLEKA----QQLGVK--IMNEEQF 714
            K+EKA     + G+   I+NEEQ+
Sbjct: 263 RKIEKAVHYRDEKGIPLKIINEEQW 287


>gi|330447729|ref|ZP_08311377.1| DNA ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491920|dbj|GAA05874.1| DNA ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 187

 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKAQ 702
           + N ++  TGTL  + R + +  +   GA+V   +S KT  + +GD       SK+ KA 
Sbjct: 120 LTNLRVAVTGTLP-LPRAEFKSLLESKGAIVVGSVSNKTSFLFMGDTGKYEITSKMAKAH 178

Query: 703 QLGVKIMN 710
            +GVKI+ 
Sbjct: 179 AVGVKIIT 186


>gi|255724588|ref|XP_002547223.1| activator 1 95 kDa subunit [Candida tropicalis MYA-3404]
 gi|240135114|gb|EER34668.1| activator 1 95 kDa subunit [Candida tropicalis MYA-3404]
          Length = 695

 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           +  + R  A++   Q GA V+  +S +T ++++G   G SK++K  QL +K ++E  F+ 
Sbjct: 1   MPNLDRTTAEQTAKQYGANVTKSISGRTSLVVLGAEAGPSKVKKINQLKIKAIDEAGFIK 60

Query: 717 LLQ 719
           LL+
Sbjct: 61  LLE 63


>gi|153956080|ref|YP_001396845.1| DNA ligase [Clostridium kluyveri DSM 555]
 gi|146348938|gb|EDK35474.1| DNA ligase [Clostridium kluyveri DSM 555]
          Length = 60

 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            + ++  L + I      YY   +  I D EYD L  +   +   +P+ AR    + P 
Sbjct: 2  DIKNKVEGLSKLIE-----YYNKDESEITDHEYDKLSLKLRKLEKEYPEYARK---DSPT 53

Query: 76 NKIGGEM 82
           K+GG +
Sbjct: 54 QKVGGSI 60


>gi|254431865|ref|ZP_05045568.1| DNA ligase [Cyanobium sp. PCC 7001]
 gi|197626318|gb|EDY38877.1| DNA ligase [Cyanobium sp. PCC 7001]
          Length = 41

 Score = 70.4 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S+KT  ++ G+  GSKL KA+ LGV +++E   L LL 
Sbjct: 2   SKKTSYVVAGEEAGSKLTKAESLGVAVLDEAGLLALLD 39


>gi|187777136|ref|ZP_02993609.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
 gi|187774064|gb|EDU37866.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
          Length = 309

 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 80/204 (39%), Gaps = 27/204 (13%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
               N Y +I+  +  ++  F+     +H    +A ++A       N    I+  +   N
Sbjct: 116 KLSKNFYSNIDNAKLNTVNNFL-GYKFQH-HDALADAMA-----CSNILLNISKELNLKN 168

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENK 650
            + +S +    VG  +       Y+       +       +P   +   E    +  + +
Sbjct: 169 INEISKL----VGVTLGYVNENGYKPSSTKGRILKRSNRQAPKENKKIIESFNFTAFKEE 224

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKA 701
            +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA
Sbjct: 225 VVVFTGGLASMTRNEAIILVGKLNGTVGSSVTKKTTCLVTNTKDIEDLNREEMSNKLKKA 284

Query: 702 QQL-----GVKIMNEEQFLFLLQQ 720
             L      +K +NEE FL   ++
Sbjct: 285 VDLKKKGQNIKFLNEETFLQKCKE 308


>gi|301299722|ref|ZP_07205973.1| conserved hypothetical protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852696|gb|EFK80329.1| conserved hypothetical protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 89

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 14/88 (15%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGS 696
             +NK +VFTG+LQ + R  A E +   G +V   +SR+TD +++          +    
Sbjct: 2   TFKNKCVVFTGSLQSMLRKDAIEKINAAGGIVKNYVSRETDYLVIAPRQLDMFEEERKSK 61

Query: 697 KLEKAQQLG-----VKIMNEEQFLFLLQ 719
           K   A+++      +KI++EE+FL +L+
Sbjct: 62  KQIAAEKINMNGGEIKIISEEKFLSMLK 89


>gi|172040860|ref|YP_001800574.1| hypothetical protein cur_1180 [Corynebacterium urealyticum DSM
           7109]
 gi|171852164|emb|CAQ05140.1| hypothetical protein cu1180 [Corynebacterium urealyticum DSM 7109]
          Length = 258

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
               + +           E +V   +  + +V TG ++   + +    +   GA+V+  +
Sbjct: 151 RAPWDRVATPDKVPEQNTEADVDGPVFGETVVITGDVEPYSKGEVWNMLADAGAIVAKNV 210

Query: 682 SRKTDIIIVGDNP--GSKLEKAQQLG-----VKIMNEEQFLFLL 718
           ++KT ++IVG+     SK ++A++L      + I   E+ L  L
Sbjct: 211 TKKTTLLIVGEWATVTSKEKRARELQEQGQELAIWTFEELLQKL 254


>gi|163840229|ref|YP_001624634.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC
           33209]
 gi|162953705|gb|ABY23220.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC
           33209]
          Length = 327

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 26/118 (22%)

Query: 626 EALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           +       P  G +       + +  +  + +VFTG LQ I R  A+    +LGA  ++ 
Sbjct: 210 QERNWLGWPEEGANPAANTAADANHPLFGQTVVFTGNLQ-IPRGNAKVKAAELGAQPASS 268

Query: 681 LSRKTDIIIVGDNP-----------GSKL-EKAQ---QL-----GVKIMNEEQFLFLL 718
           ++R+T +++VGD             GS+L  KA+   +L      +++++E +F+ ++
Sbjct: 269 VTRRTTVLVVGDGFIAADLRRGETKGSRLTAKAKRVLELHGKGQQIEVLSEGEFMQMI 326


>gi|146279555|ref|YP_001169713.1| transposase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557796|gb|ABP72408.1| Transposase and inactivated derivatives-like protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 282

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 29/162 (17%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           +LA+++         +++  A               G I+A+AI E   +P     +   
Sbjct: 132 NLARHFGITFQHHDALHDARAA--------------GLILARAIEETGHDPSEWIRLCNQ 177

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
                    R + +    +  + +VFTG LQ  +R +A +   Q GA V   +++ T I+
Sbjct: 178 ATRQDRQTLRRDGDGDGPLVGESIVFTGALQVPRR-EAADLAHQAGAAVEPNVTKGTTIL 236

Query: 689 IVGD---------NPGSKLEKAQQL-----GVKIMNEEQFLF 716
           +VGD         +  SK  KA+ L      ++I+ E  F+ 
Sbjct: 237 VVGDQDIDKLAGHDKSSKHRKAEALIEAGQSLRILGEADFMR 278


>gi|306819092|ref|ZP_07452806.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
 gi|304648068|gb|EFM45379.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
          Length = 305

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 15/88 (17%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV----------GDNPG 695
            +E +++VFTGTL+  +R   ++ V   G      L+++T +++V          G +  
Sbjct: 216 TLEGERVVFTGTLKHGRRADVEQLVLAAGGATDKNLTKQTTLLVVGIPNPSAWKEGTSAS 275

Query: 696 SKLEKAQQLG-----VKIMNEEQFLFLL 718
            KL KA QL      +++++EE+F   L
Sbjct: 276 RKLMKASQLRDSGSPIEVISEEEFFNRL 303


>gi|257880530|ref|ZP_05660183.1| predicted protein [Enterococcus faecium 1,230,933]
 gi|257883538|ref|ZP_05663191.1| predicted protein [Enterococcus faecium 1,231,502]
 gi|294623257|ref|ZP_06702124.1| DNA polymerase III, epsilon subunit [Enterococcus faecium U0317]
 gi|314940265|ref|ZP_07847437.1| conserved domain protein [Enterococcus faecium TX0133a04]
 gi|314943571|ref|ZP_07850331.1| conserved domain protein [Enterococcus faecium TX0133C]
 gi|314950783|ref|ZP_07853856.1| conserved domain protein [Enterococcus faecium TX0133A]
 gi|314992904|ref|ZP_07858303.1| conserved domain protein [Enterococcus faecium TX0133B]
 gi|314996095|ref|ZP_07861170.1| conserved domain protein [Enterococcus faecium TX0133a01]
 gi|257814758|gb|EEV43516.1| predicted protein [Enterococcus faecium 1,230,933]
 gi|257819196|gb|EEV46524.1| predicted protein [Enterococcus faecium 1,231,502]
 gi|291597328|gb|EFF28512.1| DNA polymerase III, epsilon subunit [Enterococcus faecium U0317]
 gi|313589722|gb|EFR68567.1| conserved domain protein [Enterococcus faecium TX0133a01]
 gi|313592581|gb|EFR71426.1| conserved domain protein [Enterococcus faecium TX0133B]
 gi|313597029|gb|EFR75874.1| conserved domain protein [Enterococcus faecium TX0133A]
 gi|313597738|gb|EFR76583.1| conserved domain protein [Enterococcus faecium TX0133C]
 gi|313640509|gb|EFS05089.1| conserved domain protein [Enterococcus faecium TX0133a04]
          Length = 99

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 14/88 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---------K 697
           + N+++VFTGTLQ++ R +A   V  L     + ++ KT+ ++ G    S         K
Sbjct: 3   LTNQRVVFTGTLQQMTRTQAIGLVHSLNGHCQSSVTSKTNFLVCGQYSKSLFDDSLYTKK 62

Query: 698 LEKAQQL-----GVKIMNEEQFLFLLQQ 720
            + A+ L      + I++E +F  L+ Q
Sbjct: 63  EQTARDLIALGHEITILSEVEFYALISQ 90


>gi|269977446|ref|ZP_06184418.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|269934362|gb|EEZ90924.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
          Length = 303

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 15/88 (17%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV----------GDNPG 695
            +E +++VFTGTL+  +R   ++ V   G      L+++T +++V          G +  
Sbjct: 214 TLEGERVVFTGTLKHGRRADVEQLVLAAGGATDKNLTKQTTLLVVGIPNPSAWKEGTSAS 273

Query: 696 SKLEKAQQLG-----VKIMNEEQFLFLL 718
            KL KA QL      +++++EE+F   L
Sbjct: 274 RKLMKASQLRDSGSPIEVISEEEFFNRL 301


>gi|254510966|ref|ZP_05123033.1| exonuclease [Rhodobacteraceae bacterium KLH11]
 gi|221534677|gb|EEE37665.1| exonuclease [Rhodobacteraceae bacterium KLH11]
          Length = 334

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------- 692
           E N +  +      FTG L  + R +A       G  V   +S+K  ++IVGD       
Sbjct: 233 EGNQNGPLYGHVACFTGKLS-MSRSEASTVAAGAGLSVKTSVSKKITLLIVGDQDLELLN 291

Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQYNTTLR 726
                SK  +A++L      +KI+ E  F  L+++ N   +
Sbjct: 292 GQEKSSKHRRAEELIEQGQDIKIIGESDFRSLVEKSNRPTK 332


>gi|189490483|ref|YP_001957053.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
 gi|164609548|gb|ABY63157.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
          Length = 308

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 82/240 (34%), Gaps = 24/240 (10%)

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H  P L  +    +  +R ++ ++         ++I   + P  +G  + + Y+ G   
Sbjct: 79  RHDFPVLDYKPATTLMHVRNWLAKV----DCDYTDNIDIIMTPYYNGCRVELVYQGGSLH 134

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
            A  +G G  G D +     +  IP+ +  N  E I +RG +  + N     +++ +   
Sbjct: 135 KAITKGGGIMGTDFTMNAYLVEGIPQQILDN--ERISIRGVITSTLNHVWGEDEKRV--- 189

Query: 210 RKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
                      S  L    PT+I   YL F          +        +          
Sbjct: 190 ----------ISASLMSTEPTNINLNYLVFVPDDWHVPGAMLNTKDLRSISL--AWDMEP 237

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDI--DGLVYKVDEFSLQKQLGERARSPRWMI 326
                    +  I     ++++ R  +   I   G+++ VD    + +LG  +  P W I
Sbjct: 238 AGMDSFPGQYKEIGYLEEKIETFRKEIKSKIPYSGILFTVDSLGRKMELGYTSIHPEWAI 297


>gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 328

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 90/256 (35%), Gaps = 29/256 (11%)

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL---Y 539
           I GL ++ L+   +  + A  +        L          +         S   +    
Sbjct: 75  IHGLTEEVLEGAPRFPEIAGELAERLADRVLVAHNAAFDWSMLAREYARSKSAAPVRQRL 134

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSL 598
            +I   +          LG+     ++  +LA +Y   Q  A   +++          SL
Sbjct: 135 CTIALSKE---------LGLPLPNHKL-ETLAAHYGVVQRRAHHALDDARVLAETFRPSL 184

Query: 599 IRVPLVG---DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--------- 646
            R    G    ++A   +  + +   I    +  +   PS  R      +          
Sbjct: 185 HRAAETGLRLPLLACQPLTEWSDGPTIGRQRSYRQTWRPSRKRPACPYPNPGRYEPGGQL 244

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQL 704
           ++  ++ F+G    + R   ++   + G  V+  +SR T +++  D  +P SK  KA+  
Sbjct: 245 VQGMRVAFSGD-TSVDRELLEDRAIEAGLHVATSVSRLTSVLVTNDPDSPTSKTAKARSF 303

Query: 705 GVKIMNEEQFLFLLQQ 720
           G  +++E  F+ LLQ 
Sbjct: 304 GTPVIDEAAFMQLLQD 319


>gi|168703129|ref|ZP_02735406.1| hypothetical protein GobsU_26601 [Gemmata obscuriglobus UQM 2246]
          Length = 1098

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 14/88 (15%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKA 701
              FTGTL  I    A+  V      V+A +S K   ++VGD+          G+K  KA
Sbjct: 653 SFCFTGTLANITAKDAEARVKGANGTVAANVSPKLHYLVVGDSGSPFLGQGQKGAKYIKA 712

Query: 702 QQL-----GVKIMNEEQFLFLLQQYNTT 724
           ++L      + I++E  FL +L     T
Sbjct: 713 EELNANGANISIISETMFLQMLSGQQVT 740


>gi|294656132|ref|XP_458382.2| DEHA2C15994p [Debaryomyces hansenii CBS767]
 gi|199430883|emb|CAG86464.2| DEHA2C15994p [Debaryomyces hansenii]
          Length = 915

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 13/165 (7%)

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
               +   +  A    S          I+A   D    L       D        F+Q  
Sbjct: 142 PKKSSPAKKQKADTGASSAPTGASAEEILAKIPDA--ELPETEDTKDKP----FNFFQQR 195

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                 +A   + S       +   + +    ++FTG L +++R  A+    + GA V+ 
Sbjct: 196 ------KADGPQPSGEELEIPEAQPNCLSGLTMIFTGILPRLERTVAENLAKKYGAKVTK 249

Query: 680 ILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +S KT ++++G+  G SK++K ++  +K + E+ F+ LLQ    
Sbjct: 250 SISGKTSLVVIGEEAGPSKVQKIKKNKIKAITEDGFIQLLQSMPA 294


>gi|307825547|ref|ZP_07655765.1| BRCT domain protein [Methylobacter tundripaludum SV96]
 gi|307733433|gb|EFO04292.1| BRCT domain protein [Methylobacter tundripaludum SV96]
          Length = 211

 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 14/85 (16%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKLE 699
                 TG      R K ++ +T+LG + +  +++K D +++G            G K+E
Sbjct: 124 GSTFCLTGAFITGTRDKCEQIITELGGIPAKSVTKKLDYLVIGALASRDWIATSHGRKIE 183

Query: 700 KA---QQLG--VKIMNEEQFLFLLQ 719
           KA   Q+ G  V I+ EE +   + 
Sbjct: 184 KALLYQEQGSPVTILCEESWAKFIN 208


>gi|300175670|emb|CBK20981.2| unnamed protein product [Blastocystis hominis]
          Length = 344

 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 8/65 (12%)

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNP--------GSKLEKAQQLGVKIMNEEQFLFL 717
             E +++ G +  + +S KT+ ++VG           GSK +KA +  V+I+NE++ L +
Sbjct: 1   MSELISRYGGIERSAVSGKTNYLVVGFEMEDGRPITEGSKYKKAVEKNVRIINEDELLAM 60

Query: 718 LQQYN 722
           ++  N
Sbjct: 61  IRASN 65


>gi|326789827|ref|YP_004307648.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
 gi|326540591|gb|ADZ82450.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
          Length = 305

 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NP 694
           S  + +  ++FTGTL  + R  A + V  +G      + +  + +++G            
Sbjct: 217 SHPLYDMTVIFTGTLSSMLRRDAMQKVVDVGGHCKDTVGKSANYLVIGIQDYSRFVDGEK 276

Query: 695 GSKLEKAQQL-----GVKIMNEEQFLFLL 718
            SKL+KA+ L      ++I++E  FL +L
Sbjct: 277 SSKLKKAELLISEGYDLEIIDESTFLQML 305


>gi|325109435|ref|YP_004270503.1| BRCT domain protein [Planctomyces brasiliensis DSM 5305]
 gi|324969703|gb|ADY60481.1| BRCT domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 465

 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 16/104 (15%)

Query: 632 VSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           V  S     +   + +  E + +  TGTL  +   +A E + + G V +  +SR+T +++
Sbjct: 49  VGQSSAAQPEPQENPLVLEGESVAITGTLASMTHDQAAEQIQRHGGVTTTHVSRQTTMLV 108

Query: 690 VGD---------NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
           +G+          P  KL+ AQ L      ++I+ E  +L +L+
Sbjct: 109 IGEEGWPLESDGKPSQKLQAAQALIDDGHSLRIVPETDWLRMLE 152


>gi|303290318|ref|XP_003064446.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454044|gb|EEH51351.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 370

 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 10/88 (11%)

Query: 646 EIENKKLVFTGTLQKIQ--------RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-S 696
           ++  K +V TG   ++         + KA+    Q G  V+  +S +TD+++VG  PG S
Sbjct: 223 QLAGKTIVLTGVFPELGGGCGLNLGKDKARRLCEQFGGRVTTAVSGRTDLLLVGSEPGAS 282

Query: 697 KLEKAQQL-GVKIMNEEQFLFLLQQYNT 723
           K+ KA+   G  +MN +Q    L   N 
Sbjct: 283 KVAKARSTPGCMLMNIDQLREQLTAGNA 310


>gi|90023505|ref|YP_529332.1| hypothetical protein Sde_3865 [Saccharophagus degradans 2-40]
 gi|89953105|gb|ABD83120.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Saccharophagus degradans 2-40]
          Length = 201

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 14/85 (16%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGS 696
           E   K  +FTGT     R + Q  +  LG VV++ +++K D++++G         +  G 
Sbjct: 113 EFAGKSYLFTGTCAYGNRKQCQAAIETLGGVVASSVTKKLDVLVLGTYVTESWAHETFGR 172

Query: 697 KLEKAQQ-----LGVKIMNEEQFLF 716
           K+EKA       L + I++E+ ++ 
Sbjct: 173 KIEKAMAYRESGLPIAIVSEQHWVN 197


>gi|329570556|gb|EGG52279.1| hypothetical protein HMPREF9520_02996 [Enterococcus faecalis
           TX1467]
          Length = 106

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 14/88 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---------K 697
           + N+++VFTGTLQ++ R +    V  L     + ++ KT+ ++ G    S         K
Sbjct: 10  LTNQRVVFTGTLQQMTRTQTDGLVHSLNGHCQSSVTSKTNFLVCGQYSKSLFDDSLYTKK 69

Query: 698 LEKAQQL-----GVKIMNEEQFLFLLQQ 720
            + A+ L      + I++E +F  L+ Q
Sbjct: 70  EQTARDLIALGHEITILSEVEFYALISQ 97


>gi|149178535|ref|ZP_01857123.1| probable O-linked GlcNAc transferase [Planctomyces maris DSM 8797]
 gi|148842650|gb|EDL57025.1| probable O-linked GlcNAc transferase [Planctomyces maris DSM 8797]
          Length = 421

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 14/90 (15%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------P 694
           S  ++ +++VFTGTL  +   KA E+V + G   +  +SR+T +++VG+          P
Sbjct: 16  SPALQGERVVFTGTLASMTHQKAGEFVEEHGGQAAQHVSRQTTLLVVGEEGWPLEADGSP 75

Query: 695 GSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
              L  AQ+L      ++I+ E  +L L++
Sbjct: 76  SVNLTHAQELIAEGVAIQIIKESDWLALIE 105


>gi|219110151|ref|XP_002176827.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411362|gb|EEC51290.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 609

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 21/118 (17%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQ--------KIQRHKAQEYVTQLGAVVSAILSRKT 685
             I       S  ++ K++V TG            + + K ++ V   G  V+  +S KT
Sbjct: 277 VPIPGENGVASDALKGKRVVLTGVFPEVGGGRGLTLGKEKVKKMVESFGGRVTGSVSGKT 336

Query: 686 DI------------IIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
           D+            +IVG +PG SK+ +A+   V +++ +     ++        H+D
Sbjct: 337 DMVLFTLSPSTNLKLIVGKDPGFSKVSQARGRSVTLLSLKDLKEGIESNCLEYTRHED 394


>gi|304311280|ref|YP_003810878.1| probable NAD-dependent DNA ligase (contains BRCT domain type II)
           [gamma proteobacterium HdN1]
 gi|301797013|emb|CBL45226.1| probable NAD-dependent DNA ligase (contains BRCT domain type II)
           [gamma proteobacterium HdN1]
          Length = 307

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 9/100 (9%)

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           EF     N   V     E S  +G           +     TG   +    + +E +T L
Sbjct: 178 EFVSILDNKTIVNPAFLEDSNIVGLCAVRPDIAFADAVFCLTGKSSEYTCDEFKELITSL 237

Query: 674 GAVVSAILSRKTDIIIVGDNP---------GSKLEKAQQL 704
           G    + +S+K + ++VG +          G K+EKA +L
Sbjct: 238 GGKAVSGISKKVNYLVVGADGNPCSAYACYGRKIEKAVEL 277


>gi|332557484|ref|ZP_08411806.1| Exonuclease [Rhodobacter sphaeroides WS8N]
 gi|332275196|gb|EGJ20511.1| Exonuclease [Rhodobacter sphaeroides WS8N]
          Length = 309

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 15/99 (15%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN- 693
              R   +     E   +VFTG+L  + R +A +     G  V A ++++T +++VGD  
Sbjct: 210 EPVRRAPSPGRAFEGCAVVFTGSLS-LSRKEAADLAAARGMTVLAGVTKQTTLLVVGDQD 268

Query: 694 ----PG----SKLEKAQ---QLG--VKIMNEEQFLFLLQ 719
                G    SK  KA+     G  ++I+ E +FL ++Q
Sbjct: 269 LSCLAGQLKSSKHRKAEACIANGQPIRIIGEAEFLTMVQ 307


>gi|156933190|ref|YP_001437106.1| hypothetical protein ESA_01001 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531444|gb|ABU76270.1| hypothetical protein ESA_01001 [Cronobacter sakazakii ATCC BAA-894]
          Length = 301

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 14/93 (15%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-------- 691
           +     ++  K    TG     +R   ++ + + G  +S+ +++K D +++G        
Sbjct: 208 DDIADVKVSGKAFCLTGIFLAGKRSAIEDLIQKQGGTISSGVTKKIDYLVIGTLSSRDWR 267

Query: 692 -DNPGSKLEKAQQL-----GVKIMNEEQFLFLL 718
             + G K+EKA         +KI+ EE  +  L
Sbjct: 268 FSSHGRKIEKAVTYRDDGAQIKIITEEMLIEAL 300


>gi|221369901|ref|YP_002520997.1| Exonuclease [Rhodobacter sphaeroides KD131]
 gi|221162953|gb|ACM03924.1| Exonuclease [Rhodobacter sphaeroides KD131]
          Length = 293

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 15/116 (12%)

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             +    ++  P+    E + +  +    +VFTG L  + R +A     ++G  V + ++
Sbjct: 179 EELIKPARKNHPAAITREGDPTGALSGSVVVFTGALS-MSREEAAAAAARVGMDVKSSVT 237

Query: 683 RKTDIIIVGDN-----PG----SKLEKAQQLG-----VKIMNEEQFLFLLQQYNTT 724
            KT  ++VGD       G    SK  +A+++      ++I+ E +F  L+     +
Sbjct: 238 NKTTYLVVGDQDLNVLAGHTKSSKHRRAEEMQSAGHPIQIVGETEFRTLVTNAAVS 293


>gi|6739583|gb|AAF27316.1| unknown [Lactococcus lactis]
          Length = 98

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 14/89 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV---------GDNPGSK 697
           +EN+  VFTGTL  + R +AQ  ++ L     + +++KT  ++          G +P  K
Sbjct: 2   LENEYFVFTGTLTTMTRKQAQAIISGLEGHNQSSVTKKTTRLVTGYFPIDLIKGYSPSQK 61

Query: 698 L---EKAQQLGVK--IMNEEQFLFLLQQY 721
           L   E+A + G    IM+E++F+  L Q+
Sbjct: 62  LTEAEQAIESGQPLIIMSEKEFVDFLAQF 90


>gi|299142726|ref|ZP_07035855.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella
           oris C735]
 gi|298575755|gb|EFI47632.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella
           oris C735]
          Length = 175

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 10/120 (8%)

Query: 622 ICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVV 677
           I  +E        + P       N ++    KK+V TG       R    + +   GA +
Sbjct: 50  IAELEKRHIASDTLKPLSVDEVDNPNTPFCGKKIVITGQFDAFPKRDVLGKLLRLYGADI 109

Query: 678 SAILSRKTDIIIVGDNPG-SKLEKAQQLG-----VKIMNEEQFLFLLQQYNTTLRIHDDD 731
           +  +S+ T+I+I+G+  G  K EK + L      +++ NE Q L    +YN      ++D
Sbjct: 110 NTAISKHTNIVIMGNAAGPKKKEKIKDLQGQGFPIEVFNEFQLLKTFDEYNIPYEKPNED 169


>gi|237803899|ref|ZP_04591484.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|237805538|ref|ZP_04592242.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331025879|gb|EGI05935.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331026645|gb|EGI06700.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 112

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 16/122 (13%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
               + +LE  I  L I  VG   A  LA+ + + +          A    DWL + +  
Sbjct: 3   EFAASTTLEGLIDKLHIPLVGPGAALKLAEKFGTLE----------AIIGADWLDMRQA- 51

Query: 603 LVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL 658
            + +  A+++ +F+ +  N     A+EA LK+        +K V    +  +  V TG+L
Sbjct: 52  -LPEKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSL 110

Query: 659 QK 660
           ++
Sbjct: 111 ER 112


>gi|83646824|ref|YP_435259.1| NAD-dependent DNA ligase [Hahella chejuensis KCTC 2396]
 gi|83634867|gb|ABC30834.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Hahella
           chejuensis KCTC 2396]
          Length = 202

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-------- 691
           E       + +  +FTG      R + QE     G V++  +++  D +++G        
Sbjct: 108 EPMPPITFQGRSFLFTGVCALGTREQCQEATEARGGVIAKNVTKSLDYLVIGTYVTDSWV 167

Query: 692 -DNPGSKLEKA---QQLGVK--IMNEEQF 714
            +N G K+EKA   +  GV   I+ E+ +
Sbjct: 168 HENFGRKIEKAMTYRDSGVPVVIITEQHW 196


>gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 555

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 7/87 (8%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SK 697
           + + +  +  K +  TG    + + +  + + Q G  V   +++KT +++ G+  G  SK
Sbjct: 467 DADPNGPLFGKNVTLTGEFSPLDKGQLWQAIAQAGGTVGKNVTKKTTLLVCGEWNGKTSK 526

Query: 698 LEKAQQLG-----VKIMNEEQFLFLLQ 719
            ++A++L      ++I N+ Q L  L 
Sbjct: 527 QKRAEELQEKGQEIEIWNQGQLLDALD 553


>gi|322807500|emb|CBZ05075.1| DNA ligase [Clostridium botulinum H04402 065]
          Length = 117

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 50/110 (45%), Gaps = 5/110 (4%)

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           N   +  L   V+P     +   ++ I+  K   TG L K      +E + +   +V   
Sbjct: 12  NKVLLVNLFMYVNPISIDEK---NANIKRYKFSITGVLNKDT-SYYEEMIKEANCIVVDN 67

Query: 681 LSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           +++  D ++ GD   + K+  A++   ++++E Q + +L++     ++ +
Sbjct: 68  VTKDVDYLVFGDLANAIKMMDAKKYNTRLISERQLVDILKEIKENNKMKN 117


>gi|218547976|ref|YP_002381767.1| hypothetical protein EFER_0581 [Escherichia fergusonii ATCC 35469]
 gi|218355517|emb|CAQ88128.1| conserved hypothetical protein from phage origin [Escherichia
           fergusonii ATCC 35469]
          Length = 306

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 20/149 (13%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
             + A   +     +        + +A+V+F         V+ L   +   +G      S
Sbjct: 159 KKLYALVKEILKDGVITEDESLTLHKALVDFTGCDLESGVVDGLATRLPIDVG-----AS 213

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPG 695
            E+E K    TGT    +R   +  +   G  +S+ +++K D +++G          + G
Sbjct: 214 IELEGKTYCLTGTFVAGKRAVVENLIKNAGGNISSGITQKLDFLVIGTLSSRDWKFSSHG 273

Query: 696 SKLEKAQQL------GVKIMNEEQFLFLL 718
            K+EKA          +KI++EE     L
Sbjct: 274 RKIEKAISYRDDNGAKLKIISEEMLFDAL 302


>gi|256851899|ref|ZP_05557287.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
 gi|260661840|ref|ZP_05862750.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
 gi|282931860|ref|ZP_06337341.1| DNA polymerase III [Lactobacillus jensenii 208-1]
 gi|256615857|gb|EEU21046.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
 gi|260547309|gb|EEX23289.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
 gi|281304023|gb|EFA96144.1| DNA polymerase III [Lactobacillus jensenii 208-1]
          Length = 317

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 18/130 (13%)

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRH 664
           +A+ + Y+       +  +   +   +   E         + ++NK +VF GT+ K    
Sbjct: 191 KAVFDIYRKQFTPEMLNEVKDSLKSCVLTEEIPFEYLIKRNPLKNKTVVFAGTVNK---E 247

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQL---GVKI--MNEEQF 714
           + +  V+ +G  V   +    D +++GD        S+L+KA++L   G+KI  ++E  F
Sbjct: 248 ELELIVSNMGGQVRDHVDSTIDYLVMGDKDFFSKSNSELQKARRLISEGIKISRLSESFF 307

Query: 715 LFLLQQYNTT 724
           L +L  +  +
Sbjct: 308 LDMLDSWARS 317


>gi|297205524|ref|ZP_06922920.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
 gi|297150102|gb|EFH30399.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
          Length = 317

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 18/130 (13%)

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRH 664
           +A+ + Y+       +  +   +   +   E         + ++NK +VF GT+ K    
Sbjct: 191 KAVFDIYRKQFTPEMLNEVKDSLKSCVLTEEIPFEYLIKRNPLKNKTVVFAGTVNK---E 247

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQL---GVKI--MNEEQF 714
           + +  V+ +G  V   +    D +++GD        S+L+KA++L   G+KI  ++E  F
Sbjct: 248 ELELIVSNMGGQVRDHVDSTIDYLVMGDKDFFSKSNSELQKARRLISEGIKISRLSESFF 307

Query: 715 LFLLQQYNTT 724
           L +L  +  +
Sbjct: 308 LDMLDSWARS 317


>gi|300933324|ref|ZP_07148580.1| hypothetical protein CresD4_04595 [Corynebacterium resistens DSM
           45100]
          Length = 277

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GS 696
            + ++ + +  + +  TG ++   + +  + + Q G  V   +++KT ++I+G+     S
Sbjct: 188 EKADIDNPVYGQVVCVTGDVEPYDKGQIWDMIAQAGGEVGKNVTKKTTMLIIGEWATTTS 247

Query: 697 KLEKAQQL-----GVKIMNEEQFLFLLQQ 720
           K ++A++L      +K++   +FL ++ +
Sbjct: 248 KEKRARELIDKGQEIKLVQLAEFLEMVGE 276


>gi|320582361|gb|EFW96578.1| Replication factor C subunit [Pichia angusta DL-1]
          Length = 804

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQ 702
            + +    +VFTG L  I R +     ++ GA V+  +S KT ++++G   G  K++  +
Sbjct: 114 PNCLNGLTIVFTGILPTIDRDECVRIASKYGAKVTKSISGKTSLVVIGHEAGPKKIKMIK 173

Query: 703 QLGVKIMNEEQFLFLLQQYNT 723
           +  +K ++EE F+ LLQ+   
Sbjct: 174 EKKIKCIDEEGFIQLLQKMPA 194


>gi|169794726|ref|YP_001712519.1| NAD-dependent DNA ligase [Acinetobacter baumannii AYE]
 gi|169147653|emb|CAM85516.1| hypothetical protein; putative NAD-dependent DNA ligase
           [Acinetobacter baumannii AYE]
          Length = 292

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 40/89 (44%), Gaps = 14/89 (15%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GS 696
           E+  K +  TG   +  + + ++ +   G +    L++  D +++ +           G 
Sbjct: 203 ELIGKTICLTGASARYSKAEWKKVIESQGGIFKDDLTKTVDYLVICNKGNPHWAHMSYGR 262

Query: 697 KLEKAQQL-----GVKIMNEEQFLFLLQQ 720
           K E+A +       ++I+ E+ F+ +L++
Sbjct: 263 KFEQALKWQKDGANIRILTEDDFVKVLEE 291


>gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040873|gb|ACT57669.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 119

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +LS  +A  E+  L +   +H   YY+   P+  D  YD +  R DA+   FP+L   
Sbjct: 51  VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF-- 108

Query: 69  EDPNGPLNKIGG 80
            D + P N +G 
Sbjct: 109 -DEDHPWNTVGY 119


>gi|92115957|ref|YP_575686.1| exonuclease [Nitrobacter hamburgensis X14]
 gi|91798851|gb|ABE61226.1| Exonuclease [Nitrobacter hamburgensis X14]
          Length = 334

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 29/165 (17%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           +SLA ++         + + IA N    +    +   G   A  +               
Sbjct: 134 KSLAAFFGIEFQHHDALQDAIATNE---IFRRALNESGTTAADWLSR-----------IK 179

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
                +      + N       + +VFTG L  I R +A +   +LG  V   ++++T +
Sbjct: 180 QSLPTTAKTISGDGNPDGPFSGETIVFTGEL-NIPRSEAADIAKRLGFRVEDGVTKRTTV 238

Query: 688 IIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718
           +  G          +  SK  KA+ L      ++I++E  F  ++
Sbjct: 239 LCAGVQDRTKTGGYDKSSKHRKAESLAGLGQDIRILSEGDFWAIV 283


>gi|293433432|ref|ZP_06661860.1| hypothetical protein ECCG_01557 [Escherichia coli B088]
 gi|291324251|gb|EFE63673.1| hypothetical protein ECCG_01557 [Escherichia coli B088]
 gi|324115563|gb|EGC09502.1| hypothetical protein ERBG_04476 [Escherichia coli E1167]
          Length = 296

 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 20/149 (13%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
             + A   +     +        + +A+V+F         V+ L   +   +G      S
Sbjct: 149 KKLYALVKEILKDGVITEDESLTLHKALVDFTGCDLESGVVDGLATRLPIDVG-----AS 203

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPG 695
            E+E K    TGT    +R   +  +   G  +S+ +++K D +++G          + G
Sbjct: 204 IELEGKTYCLTGTFVAGKRAVVENLIKNAGGNISSGITQKLDFLVIGTLSSRDWKFSSHG 263

Query: 696 SKLEKAQQL------GVKIMNEEQFLFLL 718
            K+EKA          +KI++EE     L
Sbjct: 264 RKIEKAISYRDDNGAKLKIISEEMLFDAL 292


>gi|306824811|ref|ZP_07458155.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304433022|gb|EFM35994.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 93

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 13/85 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697
           +  K +V TG+L+ + R ++  ++   GAVV + +S KTDI+++G         D    K
Sbjct: 3   LTGKNIVITGSLRPLTREESIRFLESKGAVVQSYVSNKTDILVLGHKQLNLFDPDKRSKK 62

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYN 722
            + A    ++ ++E QF+  L + +
Sbjct: 63  HDAA----LRRISEGQFITFLSEES 83


>gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium siraeum 70/3]
          Length = 361

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 13/98 (13%)

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            +E    +++P +      V  E+ NK +  TG      + + QE ++++GA V + ++R
Sbjct: 256 LLEFFKAQINP-LNAEIGAVDIELSNKSICLTGDFDYGSKQEVQERLSEIGATVVSNVTR 314

Query: 684 KTDIIIVGDNP---------GSKLEKAQQL---GVKIM 709
           KTDI+++G+           G+K +KA +L   G  IM
Sbjct: 315 KTDILLIGEKGSDSWACGTYGTKAKKAIELRSKGYPIM 352


>gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254039808|gb|ACT56604.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|317120701|gb|ADV02524.1| DNA ligase [Liberibacter phage SC1]
 gi|317120744|gb|ADV02566.1| DNA ligase [Liberibacter phage SC2]
 gi|317120758|gb|ADV02579.1| DNA ligase [Liberibacter phage SC2]
 gi|317120805|gb|ADV02626.1| DNA ligase [Liberibacter phage SC1]
 gi|317120845|gb|ADV02666.1| DNA ligase [Candidatus Liberibacter asiaticus]
          Length = 119

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +LS  +A  E+  L +   +H   YY+   P+  D  YD +  R DA+   FP+L   
Sbjct: 51  VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELF-- 108

Query: 69  EDPNGPLNKIGG 80
            D + P N +G 
Sbjct: 109 -DEDHPWNTVGY 119


>gi|312958406|ref|ZP_07772927.1| NAD-dependent DNA ligase [Pseudomonas fluorescens WH6]
 gi|311287470|gb|EFQ66030.1| NAD-dependent DNA ligase [Pseudomonas fluorescens WH6]
          Length = 213

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 19/113 (16%)

Query: 625 VEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           +E      + ++   +   +S       + +  VFTG +    R   Q  V + G ++  
Sbjct: 99  IERPKVGGAVAVASTDLPFNSPAPDLMWDGRLFVFTGVMAFGPRKDCQALVEERGGLIGG 158

Query: 680 ILSRKTDIIIVGDNP---------GSKLEKAQQL-----GVKIMNEEQFLFLL 718
            +S+K   ++VG            G+K+ KA +L      + I+ E  +  +L
Sbjct: 159 GVSKKVHYLVVGSVGNEQWRHSTYGTKIMKAVELREAGASIAIVGEGHWQKML 211


>gi|238798089|ref|ZP_04641577.1| hypothetical protein ymoll0001_17550 [Yersinia mollaretii ATCC
           43969]
 gi|238718069|gb|EEQ09897.1| hypothetical protein ymoll0001_17550 [Yersinia mollaretii ATCC
           43969]
          Length = 293

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 32/145 (22%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           + +I  +  + L    +   G  IA  +V+       I  V+ +                
Sbjct: 161 DGVITPDEREALKQALIDFTGCDIANGVVDGMATRLPIEHVDNID--------------- 205

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPG 695
             +++  +  TG      R+K +  +   G VV   +++K D +I+G          + G
Sbjct: 206 --LQDAVVCLTGKFLCGSRNKCKTDIEAAGGVVVDTITQKIDYLIIGTLSSRDWRFQSFG 263

Query: 696 SKLEKA----QQLGVK--IMNEEQF 714
            K+E A     + GV   I++EEQ+
Sbjct: 264 RKIELAINYRDEKGVPLKIISEEQW 288


>gi|229516132|ref|ZP_04405581.1| hypothetical protein VCC_000147 [Vibrio cholerae RC9]
 gi|229346782|gb|EEO11751.1| hypothetical protein VCC_000147 [Vibrio cholerae RC9]
          Length = 207

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +++ +E + +     DD   ++ V    D  A  I+    +  +    E +   +    
Sbjct: 57  LESYNRESSLLDIGAGDDRDLIVTVEGFKDKTAFKIMAGMAS--HAELFEKISTIIKFQ- 113

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              +  V      +K+V TG     +    ++ +   G  +   +S KT ++I     GS
Sbjct: 114 --QKVAVGKRFAGQKVVITG----FRDGALEKMIEAEGGEMQTSVSAKTTLVIAASISGS 167

Query: 697 --KLEKAQQLG------VKIMNEEQFLF 716
             KL+K   L       +K+M+   F  
Sbjct: 168 SGKLKKVHDLNNSGKASIKLMDLATFRK 195


>gi|119960742|ref|YP_948285.1| DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1]
 gi|119947601|gb|ABM06512.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens
           TC1]
          Length = 336

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 16/107 (14%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           A  +E    +          +  + +VFTG L  I R +A+     +GA   + ++ +T 
Sbjct: 228 AWPEEGPNPLPNPAAEPGHPLFGQTVVFTGDL-AITRPEAKSRAADMGARPESRVTARTT 286

Query: 687 IIIVGDN-------PGS---KLEKAQQL-----GVKIMNEEQFLFLL 718
           ++IVGD         G    K ++  +L      +++++E +FL ++
Sbjct: 287 VLIVGDGFVAGDLRAGRLTGKAKRVLELHAKGQQIEVVSEGEFLQMV 333


>gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 658

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPGS-KLEKAQQL 704
           ++  K+  TG    + R +        G  V   +SR T +++  D + GS K  +A   
Sbjct: 226 VQGMKIAVTGP-TAMSRPELVARAVAAGLNVMGSVSRHTGVLVTNDRSSGSAKARRAVAE 284

Query: 705 GVKIMNEEQFLFLLQQ 720
           GV +++E++FL LL+ 
Sbjct: 285 GVPVIDEQEFLRLLED 300


>gi|288923046|ref|ZP_06417199.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
 gi|288345596|gb|EFC79972.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
          Length = 296

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQL 704
           ++  ++VFTG   + +R    +     G  V+A +SR+T +++  +      K   A QL
Sbjct: 208 VQGMRVVFTGP-TRTERGALVDRAAAAGLEVTASVSRRTSLLVTNEKHGATRKARAAAQL 266

Query: 705 GVKIMNEEQFLFLLQ 719
           G+   +E +FL LL+
Sbjct: 267 GIPTRDEGEFLALLE 281


>gi|145344042|ref|XP_001416548.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576774|gb|ABO94841.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 597

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 17/148 (11%)

Query: 591 NNDDWLSLIRV-PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
           ++D+    ++V P VG  IA    +  + P  I            +       +    + 
Sbjct: 348 DDDEHEDGLQVAPNVGTAIAVQKPKEEKPPPKILI-----PVPGENGAIANSLLRDNSKP 402

Query: 650 KKLVFTGTLQKIQ---------RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLE 699
              V TG    +          +  A++ + + G VV + +S  TD+++VG+ PG SKL 
Sbjct: 403 MTFVLTGIFPDLGGDRIGLMQGKDMAEKLIQRFGGVVRSAVSGATDVLLVGEEPGVSKLS 462

Query: 700 KAQ-QLGVKIMNEEQFLFLLQQYNTTLR 726
            A+ +   K++N E  L ++   +   +
Sbjct: 463 AARTKANCKVLNLEHILDMIHGRSIEGK 490


>gi|237745763|ref|ZP_04576243.1| predicted protein [Oxalobacter formigenes HOxBLS]
 gi|229377114|gb|EEO27205.1| predicted protein [Oxalobacter formigenes HOxBLS]
          Length = 221

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +    A    EF+        V         S  +           K ++FTG  +  
Sbjct: 104 EEISPDNASEYAEFF--------VRKRKSRKPVSTQKKTFFGRPVQSGKGVLFTG-FKAA 154

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
            R + +  V Q+G  V   +S+  DI++ G N G  K+++A  LG+++++E+ F  +
Sbjct: 155 DRAELEAMVPQIGWHVRKSVSQTVDIVVAGYNAGPKKVQQAIDLGIQVVSEKVFREM 211


>gi|257791384|ref|YP_003181990.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
 gi|257475281|gb|ACV55601.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
          Length = 367

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 16/136 (11%)

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           ++  S   +  +  ++  AI + + +      +  L+  +       E +V     N+K 
Sbjct: 230 EELTSDPALSPIVALLQNAIADGWVDEAESNELANLISHIVNPSSSIEDSVD--FANRKF 287

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII---VGDNP------GSKLEKA-- 701
           V TG+     +     ++ + G  V   +++  D ++    G         G K++KA  
Sbjct: 288 VLTGSFNHGTKDDVSAFIQERGGEVLQNVTKTCDYVVIGGCGSEAYSLGSYGGKVKKALD 347

Query: 702 -QQLGVK--IMNEEQF 714
            Q  GV   ++ E   
Sbjct: 348 WQAKGVPMQVIEECDL 363


>gi|313608254|gb|EFR84261.1| DNA ligase [Listeria monocytogenes FSL F2-208]
          Length = 66

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
          +K    L   +  +   YY    P + D+EYD   +    I 
Sbjct: 5  KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIE 46


>gi|34764323|ref|ZP_00145155.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27885905|gb|EAA23249.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 89

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 57  AIAHAFPDLARSEDPNGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIY 115
            +   +P        + P   +G  +      KV H+ P LSL   +NI ++  FI RI 
Sbjct: 9   KLRRKYPQYKEI---SSPTTSVGASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIK 65

Query: 116 RFWQKKDDNSIFFTLE 131
           +   K  +  + + LE
Sbjct: 66  KKITK--EQELKYCLE 79


>gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
 gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
          Length = 314

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 17/118 (14%)

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++N     A    +K         + N    + NK +VF+G L  + R +A +     GA
Sbjct: 198 FKNDFYRRAYPKQIKVEDLKAETSDFNPMHPLFNKTIVFSGDLDNMSREEAMQASLNKGA 257

Query: 676 VVSAILSRKTDIIIVGDNPGSKLE---------KAQQL-----GVKIMNEEQFLFLLQ 719
           ++   ++ KTD +IV     S L          KA++       +KI++E+ F  LL+
Sbjct: 258 ILGKSVTLKTDYLIVSQ---SDLNKQKKTSKFKKAEEYANRGEKIKIISEKIFKQLLE 312


>gi|318605372|emb|CBY26870.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 294

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 32/145 (22%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           + II  +  + L    +   G  IA  +V+       I  V+ +                
Sbjct: 162 DGIITPDEREALKQALIDFTGCDIANGVVDGMATRLPIEHVDNID--------------- 206

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPG 695
             +++  +  TG      R++ +  +   G +V   +++K D +I+G          + G
Sbjct: 207 --LQDSVVCLTGKFLCGSRNQCKTEIEAAGGIVVDTITQKIDYLIIGALSSRDWRFQSYG 264

Query: 696 SKLEKA----QQLGVK--IMNEEQF 714
            K+E A     + GV   I++EEQ+
Sbjct: 265 RKIELAINYRDEKGVPLKIISEEQW 289


>gi|254994697|ref|ZP_05276887.1| DNA ligase [Anaplasma marginale str. Mississippi]
          Length = 47

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 29/43 (67%)

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +S  T +++ G NPGSK EKA  L V++++E+ ++ +++ 
Sbjct: 2   ANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVED 44


>gi|319440291|ref|ZP_07989447.1| hypothetical protein CvarD4_00856 [Corynebacterium variabile DSM
           44702]
          Length = 287

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKL 698
            +    +  + +  TG  +  ++ +  + +   G  V   +++KT ++++G  D+  SK 
Sbjct: 185 ADADGPVFGQNVTVTGDFEPYEKGEVWDMIAAAGGTVGKNVTKKTTVLVLGTWDSVTSKE 244

Query: 699 EKAQQL-----GVKIMNEEQFLF 716
           ++A++L      +++    +FL 
Sbjct: 245 KRARELQEKGQDIQLWTFAEFLE 267


>gi|268320049|ref|YP_003293705.1| hypothetical protein FI9785_1583 [Lactobacillus johnsonii FI9785]
 gi|262398424|emb|CAX67438.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 320

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD--IIAQAIVEFYQNPRNICAVE 626
            LA+ +   +   + ++ +   +  +      +    D   +       ++    + A E
Sbjct: 150 RLARSFYPQEQHNRLLDCMHRLDIAETQEHRGLDDCLDTKKVFDEFHRLFRQEHMLRAQE 209

Query: 627 ALLK----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            +         P I +  +   S   +K +V TG L  +  ++    V  LG  +   + 
Sbjct: 210 MVKTLDLTSEWPEIVKQSQAFRSPFAHKNVVITGDLD-VDDYELANAVKNLGGFIRDEVG 268

Query: 683 RKTDIIIVGDNPGSK-----LEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
           + TD ++VGD+   +     L KA+ L      ++I +E+ FL +L  +  +
Sbjct: 269 QDTDYLLVGDHDFLRTDIVELNKARALKKQGQNIRIWSEQFFLNVLDNWARS 320


>gi|315223236|ref|ZP_07865097.1| BRCA1 domain protein [Streptococcus anginosus F0211]
 gi|315187668|gb|EFU21422.1| BRCA1 domain protein [Streptococcus anginosus F0211]
          Length = 100

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 14/92 (15%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGS 696
           ++ +KK+V TG+L+ + R +   ++   GA V   +S +TDI+IVG         D    
Sbjct: 9   KLSDKKIVITGSLRPMTREEVILFLKDQGATVQGFISAQTDILIVGHKQLDLFQVDKRSK 68

Query: 697 KLEK-----AQQLGVKIMNEEQFLFLLQQYNT 723
           K E      A+   + +++EE+F  ++++  +
Sbjct: 69  KYEAALSRIAEGQAITLLSEEEFFQIVKKSQS 100


>gi|242279609|ref|YP_002991738.1| hypothetical protein Desal_2140 [Desulfovibrio salexigens DSM 2638]
 gi|242122503|gb|ACS80199.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638]
          Length = 217

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 34/148 (22%)

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK----------- 651
             G I+ + + E+  +       +    E++  +   +      +  K            
Sbjct: 62  WHGSILKERLDEYLADGVWTEEEQENFCELAKKVVGMDTEADEPMPTKTGATTLPLSDPL 121

Query: 652 ---------LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------N 693
                     V TG      R K  E VT  G  V   +S+K   +++GD         +
Sbjct: 122 PVMEFEERNFVVTGKFATGVRKKVVEMVTNRGGEVKKTVSKKVHYLVIGDLSSPNWKHSS 181

Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLF 716
            G K+EKA  L      + I++EE +  
Sbjct: 182 YGRKIEKAIDLRDQGSEIYIVSEEHWYA 209


>gi|145636818|ref|ZP_01792483.1| hypothetical protein CGSHiHH_01017 [Haemophilus influenzae PittHH]
 gi|145269899|gb|EDK09837.1| hypothetical protein CGSHiHH_01017 [Haemophilus influenzae PittHH]
          Length = 243

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG   K+ R   +         V   +++  + +I+GDN G +K+  A  +G  +++
Sbjct: 170 ICFTG-FSKVDREYLESLAEIHDFKVRKTVTKNLNFLIMGDNAGPTKINSAIDVGATLLD 228

Query: 711 EEQFLFLLQQYNT 723
           E +F  +++    
Sbjct: 229 ENEFKTMIETGEI 241


>gi|325268586|ref|ZP_08135216.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608]
 gi|324989114|gb|EGC21067.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608]
          Length = 206

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           + P      +N ++    KK+V TG  L   +R    + + Q GA ++  +S+KTDI+I+
Sbjct: 94  LKPLSAEEVENPNTPFFGKKIVITGQFLAFPKRDVLGKLLKQYGADMNTSISKKTDIVIM 153

Query: 691 GDNPGS------KLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           G   G       K  K Q   +++ NE+Q L +  +Y  
Sbjct: 154 GYAAGPKKKDLIKDLKGQGFPIQVYNEDQLLRVFDEYQI 192


>gi|261252670|ref|ZP_05945243.1| hypothetical protein VIA_002694 [Vibrio orientalis CIP 102891]
 gi|260936061|gb|EEX92050.1| hypothetical protein VIA_002694 [Vibrio orientalis CIP 102891]
          Length = 125

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG     ++++  E  +     V   +++K D ++ G N G  KLEKA+  GV+++ 
Sbjct: 48  VCFTG-FGTTEKNELTEMASANNFNVVKSVTKKLDFLVGGVNAGPKKLEKAEMQGVQVLT 106

Query: 711 EEQFLFLLQQYNT 723
            +QF  L +    
Sbjct: 107 ADQFKSLAETGEI 119


>gi|301109773|ref|XP_002903967.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262096970|gb|EEY55022.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 510

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710
           +VFTGTL +  R +A     Q G VV A L++ +  +I G   G+ K+E+A++LGV  + 
Sbjct: 4   VVFTGTLCQP-RKEATAEAEQYGYVVGARLTKTSSFLICGAKVGAKKMEEAEKLGVATLT 62

Query: 711 EEQFLFLLQ 719
           E ++   L 
Sbjct: 63  ELEWREKLA 71



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           KL  TG++      +A       G  V   +++ T  ++ GD  G KL++A++LGV ++ 
Sbjct: 69  KLAATGSVDACSGSEA----EVKGFRVQPRMTKATTFLVCGDKAGQKLKEAEKLGVTVLT 124

Query: 711 EE 712
           EE
Sbjct: 125 EE 126


>gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 309

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 14/96 (14%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
           I   ++  ++E+   +   TG    I R++ +  +   G  V + +S KTD ++ G    
Sbjct: 210 IAPVDRETTNELRGLRFAITGEFIGISRNEVETMIKLHGGRVISTVSSKTDYLVDGQQIS 269

Query: 696 SKLEK---------AQQL-----GVKIMNEEQFLFL 717
            +L           A++L      +++++ +Q   L
Sbjct: 270 DRLTDGIHSHKEIVAEELEDSGGKIQVIDYKQLKHL 305


>gi|291300433|ref|YP_003511711.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569653|gb|ADD42618.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
          Length = 410

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 62/149 (41%), Gaps = 18/149 (12%)

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
           ++   +  A+        + ++   L +V  + D+  +AI               L  + 
Sbjct: 269 HHDYLEALARVALADHHLSAEEEEDLRQVAGILDLPLEAI--------------DLAIKA 314

Query: 633 SPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           + ++ +        I     +VFTGT+ +  R + ++   + G V    +++K  ++I  
Sbjct: 315 AQALSKDSDTTPLPIAPGDMVVFTGTMPE-SREEWEQRAIEHGFVPHRAVTKKVKLVIAA 373

Query: 692 DNP--GSKLEKAQQLGVKIMNEEQFLFLL 718
           D+     K +KA+   + IM+ ++F  +L
Sbjct: 374 DSDSLSGKAKKARGYNIPIMDVDRFREVL 402


>gi|323446745|gb|EGB02801.1| hypothetical protein AURANDRAFT_68555 [Aureococcus anophagefferens]
          Length = 1440

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 648  ENKKLVFTGTLQKI---------QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SK 697
                +V  G    +          +   +  V   G  V+  +S KTDI+IVG  PG SK
Sbjct: 1290 AGATIVEAGVFGDMVGGGADLNLGKDGVRAMVESFGGRVTGAVSGKTDILIVGKEPGMSK 1349

Query: 698  LEKAQQLGVKIMNEEQF 714
            + KA+   V +M     
Sbjct: 1350 VSKARAANVTLMTLHDL 1366


>gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 330

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 9/160 (5%)

Query: 567 ARSLAKYYLSYQNFAQE----INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           AR LA+ +    + A E    +  +      +W S    P +G   +      Y+     
Sbjct: 168 ARVLAEAFRPSLHAAAERNVRLPLLECRPLTEWASSSERPRIGQQASSPYGSSYRAGSWR 227

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            +         P+ GR+E +   + +  ++ F+G    + R   ++     G  V+  +S
Sbjct: 228 PS-RKRPPCPYPNPGRYETDKPLK-QGMRVAFSGD-TSVDRELLEDRTVDAGLHVAGSVS 284

Query: 683 RKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R T +++  D  +  SK  KA+  G  I++E  +  LL+ 
Sbjct: 285 RLTSLLVTNDPDSATSKTVKAKSFGTPIVDEAAYTQLLRD 324


>gi|257082986|ref|ZP_05577347.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256991016|gb|EEU78318.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 98

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 14/88 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV---------GDNPGSK 697
           +EN+  VFTGTL  + R +AQ  +  L       +++KT  ++          G +P  K
Sbjct: 2   LENEYFVFTGTLTTMTRRQAQSIIIGLKGHNQNAVTKKTTRLVTGYFPIDLIKGYSPSHK 61

Query: 698 LEKAQQLG-----VKIMNEEQFLFLLQQ 720
           + +A+Q       + IM E++F+  L Q
Sbjct: 62  ISEAKQSKRKGQRIMIMTEKEFIEFLAQ 89


>gi|330828876|ref|YP_004391828.1| NAD-dependent DNA ligase [Aeromonas veronii B565]
 gi|328804012|gb|AEB49211.1| NAD-dependent DNA ligase [Aeromonas veronii B565]
          Length = 303

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 18/161 (11%)

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
           +YLS+      +          + ++ R+ L G I A+   E  Q    +       +  
Sbjct: 135 HYLSWWMKQNSMLRAHYPGKQLYQTVERILLDGIITAE-EREELQQQLMLFIGNPFEQGA 193

Query: 633 SPSIGRHEKNVSSEIENK---KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
              +       +SEI+      + FTG      R + +E    LGA     +++K D +I
Sbjct: 194 VTGMATKLAISNSEIDTLYDCTVCFTGMFLSGTRRQCEETALLLGATPQDSVTQKLDYLI 253

Query: 690 VGD---------NPGSKLEKA---QQLG--VKIMNEEQFLF 716
           +G+         + G K+EKA   Q+ G  V+I+ EE +L 
Sbjct: 254 IGELSSRDWRFSSYGRKIEKAMLLQEKGHSVRIVTEEAWLA 294


>gi|118616866|ref|YP_905198.1| DNA polymerase [Mycobacterium ulcerans Agy99]
 gi|118568976|gb|ABL03727.1| DNA polymerase [Mycobacterium ulcerans Agy99]
          Length = 500

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLG 705
               L  TG++++ +R + +  + Q G  V   L+R+T +++  D  +   K  KA++ G
Sbjct: 423 AGDVLCLTGSMRR-RRSEWEAELAQRGIEV-GSLTRRTRLLVAADPDSATGKARKARKYG 480

Query: 706 VKIMNEEQFLFLL 718
           + I+NE+    LL
Sbjct: 481 IPIINEDALSRLL 493


>gi|257784354|ref|YP_003179571.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
 gi|257472861|gb|ACV50980.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
          Length = 342

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII--VGDNPGS 696
            +   S+++       TG    + +    + +   GA +S  ++ KT+ +I   GD   +
Sbjct: 255 DKNTESTKLSGTVFCLTGVPCCMPKSDFLKMLITNGATLSERVTLKTNYLIDCSGDET-T 313

Query: 697 KLEKAQQL----GVKIMNEEQFLFLLQQ 720
           K++ A++     G+KI++E+Q L +L+Q
Sbjct: 314 KIKTARKYADRTGIKIISEQQMLEMLKQ 341


>gi|116671124|ref|YP_832057.1| exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
 gi|116611233|gb|ABK03957.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
          Length = 337

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 16/106 (15%)

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
             +E +      +      +  + +VFTG L  + R +A+    + GA   + ++ +T +
Sbjct: 222 WPEEGANPAPNSDAEPGHPLFGQTVVFTGEL-AMPRPEAKVLSAEFGAQPESRVTGRTTV 280

Query: 688 IIVGDN-------PGSKLEKAQ---QLG-----VKIMNEEQFLFLL 718
           ++VGD         G    KA+   +L      +++++E +FL ++
Sbjct: 281 LVVGDGFVASDLRSGRLTGKARRVLELHERGQRIEVLSEGEFLQMV 326


>gi|62390951|ref|YP_226353.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326290|emb|CAF20452.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
          Length = 476

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           P V         E  +        + +           + + SS +  + +  TG  +  
Sbjct: 345 PAVDPAWETPKAEPKKQSGRRAPWDKVATPEVIPDPNPDADPSSILYGQNVTLTGDFEPY 404

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQL-----GVKIMNEEQF 714
           ++    + +   GA++   +++KT I++ G      SK ++A++L      ++I +E+Q 
Sbjct: 405 EKGALWQRIADQGALIGKNVTKKTTILVAGPWATITSKQKRAEELKEKGQDIQIWDEKQL 464

Query: 715 LFLL 718
              L
Sbjct: 465 FTAL 468


>gi|23308895|ref|NP_601316.2| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC
           13032]
 gi|21324886|dbj|BAB99509.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Corynebacterium glutamicum ATCC 13032]
          Length = 381

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           P V         E  +        + +           + + SS +  + +  TG  +  
Sbjct: 250 PAVDPAWETPKAEPKKQSGRRAPWDKVATPEVIPDPNPDADPSSILYGQNVTLTGDFEPY 309

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQL-----GVKIMNEEQF 714
           ++    + +   GA++   +++KT I++ G      SK ++A++L      ++I +E+Q 
Sbjct: 310 EKGALWQRIADQGALIGKNVTKKTTILVAGPWATITSKQKRAEELKEKGQDIQIWDEKQL 369

Query: 715 LFLL 718
              L
Sbjct: 370 FTAL 373


>gi|220929247|ref|YP_002506156.1| NAD-dependent DNA ligase [Clostridium cellulolyticum H10]
 gi|219999575|gb|ACL76176.1| NAD-dependent DNA ligase [Clostridium cellulolyticum H10]
          Length = 247

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 15/119 (12%)

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           + N  NI   E    +    I             N+   FTG   +++R   Q  V  LG
Sbjct: 126 FNNSVNIDIYEINKLKDIIKIEGLCSVDPDINFCNELFCFTGVSSRLRRADIQNIVESLG 185

Query: 675 AVVSAILSRKTDIIIVGDNP---------GSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
                 +++ T  +++GDN          G K+E+A  L      + I++E  F   ++
Sbjct: 186 GKFKNTVTKDTKYLVIGDNGNPCWAFSCYGRKVEQAVTLRKSGKSILIVHENDFWNAVE 244


>gi|149374650|ref|ZP_01892424.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Marinobacter algicola DG893]
 gi|149361353|gb|EDM49803.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Marinobacter algicola DG893]
          Length = 203

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--- 691
           S+  +E     E E    +FTGT     R +  E    LG  +   +S+  + +++G   
Sbjct: 103 SLPINEPLPEIEFEGASFLFTGTCAFGTRKQCHEATEALGGAIVKNVSKNLNYLVLGTYV 162

Query: 692 ------DNPGSKLEKAQQLG-----VKIMNEEQFLF 716
                 +  G K+EKA +       + I+ EE +  
Sbjct: 163 TDSWAHETFGRKIEKAVEYRDNGAPIVILTEEHWAE 198


>gi|123479162|ref|XP_001322740.1| differentiation specific element binding protein [Trichomonas
           vaginalis G3]
 gi|121905592|gb|EAY10517.1| differentiation specific element binding protein, putative
           [Trichomonas vaginalis G3]
          Length = 694

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS--K 697
                  +   ++  +GTL    R + ++ +T  G  + A +    DI + G    S  K
Sbjct: 66  PSPKPGSLTGIRICASGTLPHFTRAEVRDLITACGGTLQAAIKDNVDIFLRGCLNVSQDK 125

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           L  A + G+ +++EE  L +L     T 
Sbjct: 126 LNSALKKGISVIDEEGLLAMLAAVGCTN 153


>gi|33601305|ref|NP_888865.1| hypothetical protein BB2322 [Bordetella bronchiseptica RB50]
 gi|33575741|emb|CAE32818.1| hypothetical protein BB2322 [Bordetella bronchiseptica RB50]
          Length = 224

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 14/82 (17%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NP-------GSKLEKA 701
              FTG      R    + V + G    + +++K D +++G+  NP       G K++KA
Sbjct: 141 TFCFTGKFTSGTRDWCSQQVVERGGSSLSNVTKKLDYLVIGELGNPDWLHSTFGLKIKKA 200

Query: 702 ---QQLGV--KIMNEEQFLFLL 718
              +  GV  +I++E+ +   L
Sbjct: 201 VDYRSSGVALRIISEQAWYEHL 222


>gi|33595923|ref|NP_883566.1| hypothetical protein BPP1254 [Bordetella parapertussis 12822]
 gi|33566002|emb|CAE36556.1| hypothetical protein BPP1254 [Bordetella parapertussis]
          Length = 224

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 14/82 (17%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NP-------GSKLEKA 701
              FTG      R    + V + G    + +++K D +++G+  NP       G K++KA
Sbjct: 141 TFCFTGKFTSGTRDWCSQQVVERGGSSLSNVTKKLDYLVIGELGNPDWLHSTFGLKIKKA 200

Query: 702 ---QQLGV--KIMNEEQFLFLL 718
              +  GV  +I++E+ +   L
Sbjct: 201 VDYRSSGVALRIISEQAWYEHL 222


>gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 324

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 19/181 (10%)

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG----DIIAQAI 612
           LG+     ++  SLA +Y   Q  A    +      + +   +     G     ++A   
Sbjct: 139 LGLPLPNHKL-ESLAAHYGVVQERAHHALDDARVLAETFRPSLHAAAAGGLRLPLLACQP 197

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----------IENKKLVFTGTLQKI 661
           +  + +       +   +  S    R                   ++  ++ F+G    I
Sbjct: 198 LTEWSDAPRPIGYQRSYRATSWRASRKRPACPYPNPGRYEPDGRLVQGMRVAFSGD-TSI 256

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R   ++   + G  V+  +SR T +++    +   SK+ KA+     +++E  F  LL+
Sbjct: 257 DRELLEDQAIEAGLHVATSVSRLTSLLVTNDPEAATSKITKARSFDTPVIDEAAFTQLLR 316

Query: 720 Q 720
            
Sbjct: 317 D 317


>gi|34764272|ref|ZP_00145116.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp.
          vincentii ATCC 49256]
 gi|27885952|gb|EAA23284.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp.
          vincentii ATCC 49256]
          Length = 99

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 24/58 (41%)

Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
          +++  L +++  + + YY  +  +I D E+D      +++   +P L           
Sbjct: 29 EKIVKLREDLDKYRNSYYNDNISLISDYEFDMSLTELESLKEKYPSLRNFSSTTSWEQ 86


>gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
           KM-6054]
          Length = 329

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS--- 696
             + S  ++  ++  TG      R   ++  T+ G  +++ +SR T +++  + P S   
Sbjct: 241 WADGSPLVQGMRVAITGD-TATDRELLEDRATEAGLHIASSVSRLTSLLVTNE-PTSWSG 298

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQ 720
           K  KA++ G  ++ E+ FL LL++
Sbjct: 299 KARKAREYGTPVVGEDAFLQLLRE 322


>gi|325963798|ref|YP_004241704.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469885|gb|ADX73570.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 334

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 16/106 (15%)

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
             +E +  +   +      +  + +VFTG L  + R +A++    +GA   + ++ +T +
Sbjct: 221 WPEEGANPLPNPDAEPGHPLYGQTVVFTGQL-AMGRPEAKKRSADVGARPESRVTGRTTV 279

Query: 688 IIVGDN-------PGSKLEKAQ---QL-----GVKIMNEEQFLFLL 718
           ++VGD         G    KA+   +L      +++++E +FL ++
Sbjct: 280 LVVGDGFVASDLRSGRLTGKARRVLELHERGQAIEVLSEGEFLQMV 325


>gi|146322254|ref|YP_001174711.1| hypothetical protein pGdh442_p14 [Lactococcus lactis]
 gi|145968745|gb|ABQ00023.1| hypothetical protein [Lactococcus lactis]
          Length = 98

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 14/88 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697
           +EN+  VFTGTL  + R +AQ  +  L       +++KT  ++ G+ P           K
Sbjct: 2   LENEYFVFTGTLTTMTRKQAQSIIIGLKGHNQNAVTKKTTRLVTGNFPIDLIKGYHHSHK 61

Query: 698 LEKAQQLG-----VKIMNEEQFLFLLQQ 720
           + +A+Q       + IM E++F+  L Q
Sbjct: 62  ISEAKQSKRKGQRIMIMTEKEFIEFLAQ 89


>gi|76574907|gb|ABA47377.1| conserved hypothetical protein [Lactococcus lactis]
          Length = 112

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 14/88 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697
           +EN+  VFTGTL  + R +AQ  +  L       +++KT  ++ G+ P           K
Sbjct: 16  LENEYFVFTGTLTTMTRKQAQSIIIGLKGHNQNAVTKKTTRLVTGNFPIDLIKGYHHSHK 75

Query: 698 LEKAQQLG-----VKIMNEEQFLFLLQQ 720
           + +A+Q       + IM E++F+  L Q
Sbjct: 76  ISEAKQSKRKGQRIMIMTEKEFIEFLAQ 103


>gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309B]
 gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309A]
          Length = 289

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 16/91 (17%)

Query: 647 IENKKLVFTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK---- 700
            E    V TG     K  R + +  + Q G  VS+ LS KTD  I G    S+L+     
Sbjct: 193 FEGMSFVVTGAFDDSKYNRKQIETLIKQHGGRVSSSLSAKTDYFIQGIQISSQLKDGKHS 252

Query: 701 AQQL--------GVKI--MNEEQFLFLLQQY 721
           +++L        GV I   N  QF  L+  Y
Sbjct: 253 SKELKYIELREKGVDIYKFNGNQFYELITNY 283


>gi|239629265|ref|ZP_04672296.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239528470|gb|EEQ67471.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 94

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 12/91 (13%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP------GSKL 698
           +  K+++FTG L+  +R +AQ+  T LGA     + +K DI++VG    P        KL
Sbjct: 4   LRGKRILFTGRLRSFRRFQAQQLATILGAKPVNGIDKKVDILVVGIISKPYDQLLTTQKL 63

Query: 699 EKAQQLGVKIMNEEQFLFL----LQQYNTTL 725
             A+  G+  ++E  F+      L Q   T+
Sbjct: 64  TYARTYGIPKIDELAFISWCQWRLDQLKATI 94


>gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 494

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 103/336 (30%), Gaps = 68/336 (20%)

Query: 408 EVIPKVVDIIVN---------------ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           EV+PK+VD + +                R   A     P F   C   + R    K    
Sbjct: 194 EVLPKMVDFVGDLPLVAHNAQFDFTAISRACAAAGIEAPVFNFGCSLALSRSSRLK---- 249

Query: 453 VAAHRCTGGLACSAQQLE---RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
              HR        AQ L    R  H  + DA    G+    ++   +       I    D
Sbjct: 250 FHNHRLPTV----AQALGVELRKHHDATEDARACAGI---TIELARRQNHQGGFI----D 298

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
               Q     S           D S  N+  ++ +RR          L  R  GA  +  
Sbjct: 299 FIHSQGFTLGSLDTERVYPVLRDRSGANV--AVQRRR--------LGLDTRVAGAPTS-- 346

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
                            +     +   +   +P      A+      + PR     + + 
Sbjct: 347 --------PASPASPGPVATGGREGGQASQSIPQ--QPAAR------EKPRGRAPWDKVS 390

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
                     + + +  +  + +  TG  +  ++    + +   G  V   ++RKT I++
Sbjct: 391 TPEVIPDPNPDADPNGLLFGQNVTLTGDFEPYEKGALWQRIADQGGQVGKNVTRKTTILV 450

Query: 690 VGDNP--GSKLEKAQQL-----GVKIMNEEQFLFLL 718
            G      SK ++A++L      ++I +++Q    L
Sbjct: 451 AGPWATITSKQKRAEELKEKGQDIQIWDDKQLFAAL 486


>gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
 gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
          Length = 569

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 103/336 (30%), Gaps = 68/336 (20%)

Query: 408 EVIPKVVDIIVN---------------ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           EV+PK+VD + +                R   A     P F   C   + R    K    
Sbjct: 269 EVLPKMVDFVGDLPLVAHNAQFDFTAISRACAAAGIEAPVFNFGCSLALSRSSRLK---- 324

Query: 453 VAAHRCTGGLACSAQQLE---RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
              HR        AQ L    R  H  + DA    G+    ++   +       I    D
Sbjct: 325 FHNHRLPTV----AQALGVELRKHHDATEDARACAGI---TIELARRQNHQGGFI----D 373

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
               Q     S           D S  N+  ++ +RR          L  R  GA  +  
Sbjct: 374 FIHSQGFTLGSLDTERVYPVLRDRSGANV--AVQRRR--------LGLDTRVAGAPTS-- 421

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
                            +     +   +   +P      A+      + PR     + + 
Sbjct: 422 --------PASPASPGPVATGGREGGQASQSIPQ--QPAAR------EKPRGRAPWDKVS 465

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
                     + + +  +  + +  TG  +  ++    + +   G  V   ++RKT I++
Sbjct: 466 TPEVIPDPNPDADPNGLLFGQNVTLTGDFEPYEKGALWQRIADQGGQVGKNVTRKTTILV 525

Query: 690 VGDNP--GSKLEKAQQL-----GVKIMNEEQFLFLL 718
            G      SK ++A++L      ++I +++Q    L
Sbjct: 526 AGPWATITSKQKRAEELKEKGQDIQIWDDKQLFAAL 561


>gi|290986488|ref|XP_002675956.1| BRCT domain-containing protein [Naegleria gruberi]
 gi|284089555|gb|EFC43212.1| BRCT domain-containing protein [Naegleria gruberi]
          Length = 615

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-- 693
           + +     S  + +     +GTL K +R   +  + + G   S+ ++  T+ +I  ++  
Sbjct: 1   MVKKSNGKSGVLSSLVFCCSGTLSK-KRSDVESDIKKNGGKTSSSVTNSTNFLITTEHEA 59

Query: 694 ---PGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
              P SK+  A+   V I++E+     +     
Sbjct: 60  RGIPTSKVNNAKAKDVPIVSEDFLWKCIDSGKV 92


>gi|145296078|ref|YP_001138899.1| hypothetical protein cgR_2000 [Corynebacterium glutamicum R]
 gi|140845998|dbj|BAF54997.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 467

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
               + +           + + +S +  + +  TG  +  ++    + +   GA++   +
Sbjct: 356 RAPWDKVATPEVIPDPNPDADPASILYGQNVTLTGDFEPYEKGALWQQIADQGALIGKNV 415

Query: 682 SRKTDIIIVGDNP--GSKLEKAQQL-----GVKIMNEEQFLFLL 718
           ++KT I++ G      SK ++A++L      ++I +E+Q    L
Sbjct: 416 TKKTTILVAGPWATITSKQKRAEELKEKGQDIQIWDEKQLFTAL 459


>gi|329667930|gb|AEB93878.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii DPC
           6026]
          Length = 320

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 17/172 (9%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD--IIAQAIVEFYQNPRNICAVE 626
            LA+ +   +   + ++ +   +  +      +    D   +       ++    + A E
Sbjct: 150 RLARSFYPQEQHNRLLDCMHRLDIAETQEHRGLDDCLDTKKVFDEFHRLFRQEHMLRAQE 209

Query: 627 ALLK----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            +         P I +  +   S   +K +V  G L  +  ++    V  LG  +   + 
Sbjct: 210 MVKTLDLTSEWPEIVKQSQAFRSPFAHKNVVIAGDLD-VDEYELANAVKNLGGFIRDEVG 268

Query: 683 RKTDIIIVGDNPGSK-----LEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
           + TD ++VGD+   +     L KA+ L      ++I +E+ FL +L  +  +
Sbjct: 269 QDTDYLLVGDHDFFRTDIVELNKARALKKQGQNIRIWSEQFFLNVLDNWARS 320


>gi|220913055|ref|YP_002488364.1| exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
 gi|219859933|gb|ACL40275.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 336

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 621 NICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           N  A+    +   P  G + +          +  + +VFTG L  I R +A+    + GA
Sbjct: 211 NGAALVRPFQSGWPDEGLNPEPNPDAEPGHPLYGQTVVFTGQLS-IGRPEAKVRSAEAGA 269

Query: 676 VVSAILSRKTDIIIVGDN-------PGSKLEKAQ---QL-----GVKIMNEEQFLFLL 718
              + ++ +T +++VGD         G    KA+   +L      +++++E +FL ++
Sbjct: 270 RTESRVTGRTTVLVVGDGFVAADLRSGRLTGKARRVLELHDRGQAIEVLSEGEFLQMV 327


>gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 335

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 14/157 (8%)

Query: 567 ARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVP--LVGDIIAQAIVEFYQNPRNIC 623
           AR LA+ +  S    A+    +              P   +G     A   + Q      
Sbjct: 173 ARVLAETFRPSLHRAAEAGVRLPLLACQPLTEWSDPPSRGIG-----AQRSYRQQSWRPN 227

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
                    +P   +    ++   +  ++ F+G    + R   ++   + G  V+  +SR
Sbjct: 228 RKRPACPYPNPGRYQPGGLLT---QGMRVAFSGD-TSVDRELLEDRAIEAGLHVATSVSR 283

Query: 684 KTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
            T +++  D     SK  KA+  G  I++E  F  LL
Sbjct: 284 LTSLLVTNDPDAATSKTAKARSFGTPIVDEAAFTHLL 320


>gi|288921215|ref|ZP_06415500.1| stress protein [Frankia sp. EUN1f]
 gi|288347369|gb|EFC81661.1| stress protein [Frankia sp. EUN1f]
          Length = 622

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII---VGDNPGSKLEKAQQ 703
           I+  ++ FTG      R + ++     G  V+  +SR+T +++   VG   G K + A  
Sbjct: 200 IQGMRIAFTGE-TDTPRDRLEQLAIDAGLAVATSVSRRTSVLVTNHVGSGSG-KAKAAVA 257

Query: 704 LGVKIMNEEQFLFL 717
            GV +++E  FL L
Sbjct: 258 HGVPVIDEATFLRL 271


>gi|227889381|ref|ZP_04007186.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850183|gb|EEJ60269.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
           ATCC 33200]
          Length = 320

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 17/172 (9%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD--IIAQAIVEFYQNPRNICAVE 626
            LA+ +   +   + ++ +   +  +      +    D   +       ++    + A E
Sbjct: 150 RLARSFYPQEQHNRLLDCMHRLDIAETQEHRGLDDCLDTKKVFDEFHRLFRQEHMLRAQE 209

Query: 627 ALLK----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            +         P I +  +   S   +K +V  G L  +  ++    V  LG  +   + 
Sbjct: 210 MVKTLDLTSEWPEIVKQSQAFRSPFAHKNVVIAGDLD-VDDYELANAVKNLGGFIRDEVG 268

Query: 683 RKTDIIIVGDNPGSK-----LEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
           + TD ++VGD+   +     L KA+ L      ++I +E+ FL +L  +  +
Sbjct: 269 QDTDYLLVGDHDFFRTDIVELNKARALKKQGQNIRIWSEQFFLNVLDNWARS 320


>gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
 gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
          Length = 405

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706
             ++VFTG L  + R +  +   Q G      +++ T +++  D  +   K  KA+  G+
Sbjct: 332 GDQVVFTGELS-VPRDQLIDLAQQAGLK-HGGVNKSTKLVVAADPDSQSGKAAKARSYGI 389

Query: 707 KIMNEEQFLFLLQQ 720
            ++ E  F  +L  
Sbjct: 390 PVVTEAAFARMLAD 403


>gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 331

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 9/164 (5%)

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNN----DDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           AR LA+ +      A   N  +  +      +W      P +G          Y+     
Sbjct: 169 ARVLAEAFRPSLRAAAASNVRLPLHECRPLTEWRESPAAPRIGQQAGPGGYGAYRPTSWR 228

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            +         P+ GR+E     + +  ++ F+G    ++R   ++   + G  V+  LS
Sbjct: 229 PS-RKRPACPHPNPGRYEDGKPLK-QGMRVAFSGD-TSVERDLLEDRAIEAGLHVATSLS 285

Query: 683 RKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           R T +++  D  +  SK+ KA+Q G  +++E  F  LL+     
Sbjct: 286 RVTSLLVTNDPDSHTSKVVKARQYGTPVVDEAAFGQLLRDVEPA 329


>gi|203284766|ref|YP_002221610.1| Hypothetical cytosolic protein [Lactobacillus rhamnosus HN001]
 gi|229553843|ref|ZP_04442568.1| hypothetical cytosolic protein [Lactobacillus rhamnosus LMS2-1]
 gi|258507432|ref|YP_003170183.1| cytosolic protein [Lactobacillus rhamnosus GG]
 gi|290891682|ref|ZP_06554731.1| hypothetical protein AWRIB429_2121 [Oenococcus oeni AWRIB429]
 gi|199631655|gb|ACH91631.1| Hypothetical cytosolic protein [Lactobacillus rhamnosus HN001]
 gi|229312792|gb|EEN78765.1| hypothetical cytosolic protein [Lactobacillus rhamnosus LMS2-1]
 gi|257147359|emb|CAR86332.1| Conserved cytosolic protein [Lactobacillus rhamnosus GG]
 gi|259648787|dbj|BAI40949.1| hypothetical protein [Lactobacillus rhamnosus GG]
 gi|290478681|gb|EFD87356.1| hypothetical protein AWRIB429_2121 [Oenococcus oeni AWRIB429]
 gi|327383984|gb|AEA55459.1| cytosolic protein [Lactobacillus casei LC2W]
 gi|327387196|gb|AEA58669.1| cytosolic protein [Lactobacillus casei BD-II]
          Length = 94

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP------GSKL 698
           +  K+++FTG L+  +R +AQ+  T LGA     + +  DI++VG    P        KL
Sbjct: 4   LRGKRILFTGRLRSFRRFQAQQLATILGAKPVNGIDKNVDILVVGIISKPYDQLLTTQKL 63

Query: 699 EKAQQLGVKIMNEEQFLFL----LQQYNTTL 725
             A+  G+  ++E  F+      L Q   TL
Sbjct: 64  TYARTYGIPKIDELAFISWCQWRLDQLKATL 94


>gi|258510010|ref|YP_003175673.1| predicted ORF [Lactobacillus rhamnosus Lc 705]
 gi|257152851|emb|CAR91822.1| Conserved cytosolic protein [Lactobacillus rhamnosus Lc 705]
          Length = 94

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP------GSKL 698
           +  K+++FTG L+  +R +AQ+  T LGA     + +  DI++VG    P        KL
Sbjct: 4   LRGKRILFTGRLRSFRRLQAQQLATILGAKPVNGIDKNVDILVVGIISKPYDQLLTTQKL 63

Query: 699 EKAQQLGVKIMNEEQFLFL----LQQYNTTL 725
             A+  G+  ++E  F+      L Q   TL
Sbjct: 64  TYARTYGIPKIDELAFISWCQWRLDQLKATL 94


>gi|42519676|ref|NP_965606.1| hypothetical protein LJ0649 [Lactobacillus johnsonii NCC 533]
 gi|41583965|gb|AAS09572.1| hypothetical protein LJ_0649 [Lactobacillus johnsonii NCC 533]
          Length = 320

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 66/174 (37%), Gaps = 21/174 (12%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ +   +   + ++ +   +  +      +    D   + + + +        +   
Sbjct: 150 RLARSFYPQEQHNRLLDCMHRLDIAETQEHRGLDDCLDT--KKVFDEFHKLFKQEHMLRA 207

Query: 629 LKEV--------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
            + V         P + +  +   S   +K +V  G L  +  ++    V  LG  +   
Sbjct: 208 QEMVKTLDLTSEWPELVKQSQAFRSPFAHKNVVIAGDLD-VDEYELANAVKNLGGFIRDE 266

Query: 681 LSRKTDIIIVGDNPGSK-----LEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
           + + TD ++VGD+   +     L KA+ L      ++I +E+ FL +L  +  +
Sbjct: 267 VGQDTDYLLVGDHDFFRTDIVELNKARALKKQGQNIRIWSEQFFLNVLDNWARS 320


>gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 336

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 8/166 (4%)

Query: 567 ARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
           AR LA+ +  S    A++   +              P +G    QA       P +    
Sbjct: 169 ARVLAEAFRPSLHAAARDNVRLPLLECLPLTEWSATPRIG---RQATPPGASRPGSWRQS 225

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
             L     P+ GR+E+    + +  ++ F+G    + R   ++     G  V+  LSR T
Sbjct: 226 RKLPPCPYPNPGRYEEGRPLK-QGMRVAFSGD-TSVDRELLEDRAVDAGLHVATSLSRLT 283

Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
            +++  D  +  SK+ KA+Q G  +++E  F  LLQ          
Sbjct: 284 SLLVTNDPDSGTSKVLKARQFGTPVVDEAAFGQLLQNVEPAAETEG 329


>gi|227548945|ref|ZP_03978994.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078970|gb|EEI16933.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 472

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--N 693
               + + +S +    +  TG  +   + +    +   GA V   +++KT I+I G+   
Sbjct: 375 EPDPQADPNSPLYGHNVTLTGEFEPFDKGQLWSGIAAQGAQVGKNVTKKTTILITGEWAT 434

Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLL 718
             SK ++A++L      ++I + EQ L  L
Sbjct: 435 MTSKEKRARELMDKGQDIQIWSAEQLLDAL 464


>gi|307826184|ref|ZP_07656395.1| hypothetical protein MettuDRAFT_4242 [Methylobacter tundripaludum
           SV96]
 gi|307732823|gb|EFO03689.1| hypothetical protein MettuDRAFT_4242 [Methylobacter tundripaludum
           SV96]
          Length = 309

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 19/104 (18%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS-AILSRKTDIIIVGD---NP------GS 696
            + +  V TG L+   R    + + + G  V    +   TD +++GD           G 
Sbjct: 118 FDRRVFVITGNLKMGARRTVIQAIEEQGGEVVLKNIRMDTDYLVIGDIGSKAWMHSTHGR 177

Query: 697 KLEKAQQL-----GVKIMNEEQFLFLL----QQYNTTLRIHDDD 731
           K+EKA +L     G+ I++E+ F+  L    +Q + ++   + +
Sbjct: 178 KIEKAVELREQGHGIAIISEQHFMDSLIPNIEQQSASIDAANTN 221


>gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 325

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 10/161 (6%)

Query: 567 ARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
           AR LA+ +  S    A++   +              P +G   +           +    
Sbjct: 169 ARVLAEAFRPSLHAAARDGVRLPLLECLPLTEWNATPRIGRQPSGGY-----PSGSWRPS 223

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
                   P+ GR+E+    + +  ++ F+G    + R   ++   + G  V+  LSR T
Sbjct: 224 RKRPVCPYPNPGRYEEGKPLK-QGMRVAFSGD-TSVDRELLEDRAVEAGLHVATSLSRLT 281

Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            +++  D  +  SK  KA+Q G  +++E  F  LL+     
Sbjct: 282 SLLVTNDPGSGTSKTAKARQYGTPVIDEAAFGQLLRDVEPA 322


>gi|258624897|ref|ZP_05719825.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258582895|gb|EEW07716.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 302

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 14/90 (15%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------G 695
             +   ++ FTG      R   +    + GA V + +S++ D++++G            G
Sbjct: 212 DSVSGLQICFTGKFFAGNRKSVESLAKEHGADVRSSVSKQLDLLVIGSMASRDWIHTSHG 271

Query: 696 SKLEKA---QQLG--VKIMNEEQFLFLLQQ 720
            K+E     +Q G   KI+ E+ +  L+ +
Sbjct: 272 RKIEAVINNRQYGSLTKILTEQAWFELIDK 301


>gi|301155073|emb|CBW14536.1| hypothetical phage protein [Haemophilus parainfluenzae T3T1]
          Length = 233

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 2/108 (1%)

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
               +          +       +   ++    ++ FTG   K  +   +         V
Sbjct: 123 EYYPVEEWLERQGIDTVKYQPKLQTKKAKSSPLEICFTG-FSKADKEHLEILAKVHDFKV 181

Query: 678 SAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
              ++   D ++ G N G SK++ A  +G  ++NE QF+ +++    T
Sbjct: 182 RKTVTHNLDFLVTGYNAGPSKIDAAMNVGAILLNESQFINMIETGEIT 229


>gi|293392402|ref|ZP_06636724.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291425056|gb|EFE98263.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 293

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 15/88 (17%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGS 696
           E+  +    TG     +R   +E +   G  V   +++K D +++G          + G 
Sbjct: 205 EVRGRVFCLTGIFMAGKRSIVEERIKFAGGNVIDNITKKLDYLVIGTLSSRDWKFSSHGR 264

Query: 697 KLEKA------QQLGVKIMNEEQFLFLL 718
           K+EKA      +   +KI++EE     L
Sbjct: 265 KIEKAINYRDEEGAKLKIISEENLFEFL 292


>gi|298381865|ref|ZP_06991462.1| predicted protein [Escherichia coli FVEC1302]
 gi|298277005|gb|EFI18521.1| predicted protein [Escherichia coli FVEC1302]
          Length = 178

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 20/166 (12%)

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
               F      +I  LG+  L    +       ++ P D+F++   + T   +       
Sbjct: 30  ACWRFFEPRGVHIHQLGQTMLKQLVEKC----YVQKPLDMFSMTAGKLTGLDQS------ 79

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           G    + +   I + +++ L   +F+ GI  V  E A  LAK + + +          A 
Sbjct: 80  GPKLASIICRGIEQAKDVQLGELLFACGIYGVEEEEAWLLAKRFSNLE----------AL 129

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
                 SL+   L+ + +A     F+++P N+ A+  L  E    +
Sbjct: 130 YGASIDSLMSYNLLNEAVAVNTYNFFRHPLNVSALNELQTEGGLKV 175


>gi|293406131|ref|ZP_06650057.1| predicted protein [Escherichia coli FVEC1412]
 gi|291426137|gb|EFE99169.1| predicted protein [Escherichia coli FVEC1412]
          Length = 171

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 20/166 (12%)

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
               F      +I  LG+  L    +       ++ P D+F++   + T   +       
Sbjct: 23  ACWRFFEPRGVHIHQLGQTMLKQLVEKC----YVQKPLDMFSMTAGKLTGLDQS------ 72

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           G    + +   I + +++ L   +F+ GI  V  E A  LAK + + +          A 
Sbjct: 73  GPKLASIICRGIEQAKDVQLGELLFACGIYGVEEEEAWLLAKRFSNLE----------AL 122

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
                 SL+   L+ + +A     F+++P N+ A+  L  E    +
Sbjct: 123 YGASIDSLMSYNLLNEAVAVNTYNFFRHPLNVSALNELQTEGGLKV 168


>gi|224541263|ref|ZP_03681802.1| hypothetical protein CATMIT_00423 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525812|gb|EEF94917.1| hypothetical protein CATMIT_00423 [Catenibacterium mitsuokai DSM
           15897]
          Length = 102

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 15/86 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697
           +  K  V TG    ++R     Y+   G  V +  +R TD +IVG            G+K
Sbjct: 16  LTGK-FVVTGLFTSMRRSDVVHYIYTHGGSVLSAPTRATDYLIVGGEKSKTWKYGQYGTK 74

Query: 698 LEKAQQL-----GVKIMNEEQFLFLL 718
           + K   L      + I++EE F+  +
Sbjct: 75  IRKGLDLREKDEKILIISEEDFMRCI 100


>gi|218706125|ref|YP_002413644.1| hypothetical protein ECUMN_2949 [Escherichia coli UMN026]
 gi|218433222|emb|CAR14120.1| hypothetical protein from bacteriophage origin; putative DNA ligase
           fragment [Escherichia coli UMN026]
          Length = 208

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 20/166 (12%)

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
               F      +I  LG+  L    +       ++ P D+F++   + T   +       
Sbjct: 60  ACWRFFEPRGVHIHQLGQTMLKQLVEKC----YVQKPLDMFSMTAGKLTGLDQS------ 109

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           G    + +   I + +++ L   +F+ GI  V  E A  LAK + + +          A 
Sbjct: 110 GPKLASIICRGIEQAKDVQLGELLFACGIYGVEEEEAWLLAKRFSNLE----------AL 159

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
                 SL+   L+ + +A     F+++P N+ A+  L  E    +
Sbjct: 160 YGASIDSLMSYNLLNEAVAVNTYNFFRHPLNVSALNELQTEGGLKV 205


>gi|109289969|ref|YP_655501.1| hypothetical protein MhaA1p34 [Mannheimia phage phiMHaA1]
 gi|254360843|ref|ZP_04976990.1| hypothetical protein MHA_0409 [Mannheimia haemolytica PHL213]
 gi|90110575|gb|ABD90585.1| hypothetical protein [Mannheimia phage phiMhaA1-PHL101]
 gi|90110626|gb|ABD90635.1| hypothetical protein [Mannheimia phage phiMhaA1-BAA410]
 gi|153092317|gb|EDN73386.1| hypothetical protein MHA_0409 [Mannheimia haemolytica PHL213]
          Length = 172

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS----KLEKAQQLGVK 707
           L FTG  ++ ++++  +        V   ++   D +I      +    KL KA++LG+K
Sbjct: 96  LCFTG-FKQARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPAKLAKAEKLGIK 154

Query: 708 IMNEEQFLFLLQ 719
           I+++E+FL++L+
Sbjct: 155 IIDDEEFLYMLE 166


>gi|238853316|ref|ZP_04643700.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4]
 gi|300362992|ref|ZP_07059162.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           JV-V03]
 gi|238834110|gb|EEQ26363.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4]
 gi|300353042|gb|EFJ68920.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           JV-V03]
          Length = 320

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD--IIAQAIVEFYQNPRNICAVE 626
            LA+ +   +   + ++ +   N  +      +    D   +     + ++    + A E
Sbjct: 150 RLARSFYPQERHNRLLDCMHRMNIAENQEHRGLDDCLDTKKVFDEFHKLFKQEHMLRAQE 209

Query: 627 ALLK----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
           A+         P I +  +   S   +KK+V  G L  +  ++    V  LG  +   + 
Sbjct: 210 AVKTLDLTSEWPDIVKQTQAFRSPFIHKKVVIAGDLD-LDEYELANAVKNLGGFIQEEVG 268

Query: 683 RKTDIIIVGD-----NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
           + TD ++VGD        ++L KA+ L      ++  +E  FL +L  +  +
Sbjct: 269 QDTDYVLVGDHDFFRTDVTELNKAKALKKQGQNIRTWSESFFLNVLDNWARS 320


>gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 343

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 9/157 (5%)

Query: 567 ARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
           AR LA+ +  S    A+    +              P    +  +      + P +    
Sbjct: 168 ARVLAEAFRPSLHAAARGGVRLPLLECRPLTEWSDSP----VTPRVGYRAVRQPNSWRPS 223

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
                   P+ GR+EK    + +  ++ F+G    I R   ++   + G  V+  +SR T
Sbjct: 224 RKRPACPYPNPGRYEKEKPLK-QGMRVAFSGD-TSIDRELLEDRAVEAGLHVATSVSRLT 281

Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +++  D     SK +KA+  G  I+ E  F  LL+ 
Sbjct: 282 SLLVTNDPDAATSKTQKAKSFGTPILEESAFTHLLRD 318


>gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 341

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 9/157 (5%)

Query: 567 ARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
           AR LA+ +  S    A+    +              P    +  +      + P +    
Sbjct: 166 ARVLAEAFRPSLHAAARGGVRLPLLECRPLTEWSDSP----VTPRVGYRAVRQPNSWRPS 221

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
                   P+ GR+EK    + +  ++ F+G    I R   ++   + G  V+  +SR T
Sbjct: 222 RKRPACPYPNPGRYEKEKPLK-QGMRVAFSGD-TSIDRELLEDRAVEAGLHVATSVSRLT 279

Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +++  D     SK +KA+  G  I+ E  F  LL+ 
Sbjct: 280 SLLVTNDPDAATSKTQKAKSFGTPILEESAFTHLLRD 316


>gi|296119762|ref|ZP_06838316.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295966916|gb|EFG80187.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 1149

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 7/119 (5%)

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQR 663
           G + A+ I       +++     ++ E+   +     N   ++    ++  TGT  ++ R
Sbjct: 282 GVVTAREIKTLESVAKSLNVDAKVVDEMLEQVSESPLNEPLQLSPGDRIALTGT-TEVSR 340

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKIMNEEQFLFLLQ 719
            +     T  G +V   +++ T +++  D PGS   K ++A++L + I+NE +F  LL 
Sbjct: 341 EEWNLRATAAG-LVVGEVAKNTKVLVASD-PGSRNSKAQRARELNIPIVNETKFAALLN 397


>gi|326497313|dbj|BAK02241.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 978

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            A+    +   N   +E     +   +  HE           +  T  L   +R +  E 
Sbjct: 170 WAVNNLKKPIVNRNWLEQ--CWIEHRVVPHEPYKILPFTGLNICIT-KLDADKRKELMEI 226

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMN 710
           + Q G   SA L++K   ++  +  G K   A++ G ++I+N
Sbjct: 227 IEQNGGQYSANLTKKCTHLVANEPGGDKYLVAKRWGNIQIVN 268



 Score = 37.7 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA-QQLGV 706
           +   ++ +G  +K +R + ++ VT +G ++   +S   D ++  D   +K + A   L  
Sbjct: 119 DGVTVLCSG-FEKDERARIEQLVTAMGGLLQTKVSMDVDFVVAKDVMAAKYKWAVNNLKK 177

Query: 707 KIMN 710
            I+N
Sbjct: 178 PIVN 181


>gi|328464330|gb|EGF35747.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus MTCC 5462]
          Length = 47

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           TD++I GD  GSKL KAQ L V IM+E   L  L+
Sbjct: 12  TDLVIAGDAAGSKLTKAQDLNVPIMDETALLTNLK 46


>gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
 gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
          Length = 611

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS-KLEKAQQL 704
           ++  K+  TG      R +        G  V + +S  T +++  +   GS K  +A   
Sbjct: 226 VQGMKIALTGQ-TATSRAELVARSVAAGLNVMSSVSGHTSVLVTNEPASGSAKARRAAAE 284

Query: 705 GVKIMNEEQFLFLL 718
           GV +++E  FL LL
Sbjct: 285 GVPVIDEHAFLRLL 298


>gi|302519143|ref|ZP_07271485.1| DNA polymerase III [Streptomyces sp. SPB78]
 gi|302428038|gb|EFK99853.1| DNA polymerase III [Streptomyces sp. SPB78]
          Length = 664

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS-KLEKAQQL 704
           ++  K+  TG      R +        G  V + +S  T +++  +   GS K  +A   
Sbjct: 279 VQGMKIALTGQ-TATSRAELVARSVAAGLNVMSSVSGHTSVLVTNEPASGSAKARRAAAE 337

Query: 705 GVKIMNEEQFLFLL 718
           GV +++E  FL LL
Sbjct: 338 GVPVIDEHAFLRLL 351


>gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 341

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
                   P+ GR+EK    + +  ++ F+G    I R   ++   + G  V+  +SR T
Sbjct: 222 RKRPACPYPNPGRYEKEKPLQ-QGMRVAFSGD-TSIDRELLEDRAIEAGLHVATSVSRLT 279

Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +++  D     SK +KA+  G  I+ E  F  LL+ 
Sbjct: 280 SLLVTNDPDAATSKTQKAKSFGTPILEESAFTHLLRD 316


>gi|126173505|ref|YP_001049654.1| hypothetical protein Sbal_1267 [Shewanella baltica OS155]
 gi|125996710|gb|ABN60785.1| hypothetical protein Sbal_1267 [Shewanella baltica OS155]
          Length = 205

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706
              ++ FTG   K  R   +E  T  G +V   ++R   I+  G N G  K+  A+  G 
Sbjct: 2   AGLEVCFTG-FAKQSRSDLEELATDSGFIVRKAVTRNLHILCAGSNAGPKKVADAKADGA 60

Query: 707 KIMNEEQFLFLLQQYNTT 724
            I+ E  F+ L++    +
Sbjct: 61  AILLENDFIALVRTGELS 78


>gi|261492599|ref|ZP_05989152.1| hypothetical protein COK_1023 [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494901|ref|ZP_05991373.1| hypothetical protein COI_0690 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309437|gb|EEY10668.1| hypothetical protein COI_0690 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311758|gb|EEY12908.1| hypothetical protein COK_1023 [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 172

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS----KLEKAQQLGVK 707
           L FTG  ++ ++++  +        V   ++   D +I      +    KL KA++LG+K
Sbjct: 96  LCFTG-FKQARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPAKLAKAEKLGIK 154

Query: 708 IMNEEQFLFLLQ 719
           I+N+E+FL++L+
Sbjct: 155 IINDEEFLYMLE 166


>gi|318060238|ref|ZP_07978961.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318076974|ref|ZP_07984306.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 647

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS-KLEKAQQL 704
           ++  K+  TG      R +        G  V + +S  T +++  +   GS K  +A   
Sbjct: 222 VQGMKIALTGQ-TATSRAELVARSVAAGLNVMSSVSGHTSVLVTNEPASGSAKARRAAAE 280

Query: 705 GVKIMNEEQFLFLL 718
           GV +++E  FL LL
Sbjct: 281 GVPVIDEHAFLRLL 294


>gi|294677511|ref|YP_003578126.1| hypothetical protein RCAP_rcc01975 [Rhodobacter capsulatus SB 1003]
 gi|294476331|gb|ADE85719.1| conserved hypothetical protein [Rhodobacter capsulatus SB 1003]
          Length = 204

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 15/86 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697
            + ++  FTGT    +R + +  V + GA V   + + TD +++GD           G K
Sbjct: 120 FDGRRFCFTGTFSFGRRQQCEAAVQRYGA-VCGSMVKNTDYLVIGDYASAAWKQSSFGRK 178

Query: 698 LEKAQQL-----GVKIMNEEQFLFLL 718
           +E+A +       + I++E+ +   +
Sbjct: 179 IERAVEWRAQGASICIVSEQHWRNYI 204


>gi|85712349|ref|ZP_01043399.1| hypothetical protein OS145_06549 [Idiomarina baltica OS145]
 gi|85693792|gb|EAQ31740.1| hypothetical protein OS145_06549 [Idiomarina baltica OS145]
          Length = 124

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG      +             V A +++K D ++ G N G  K+EKA+  G + +N
Sbjct: 48  VCFTG-FGISDKDYLSNLAHDNRFKVVASVTKKLDYLVGGANAGPKKIEKAEAQGAQCLN 106

Query: 711 EEQFLFLLQ 719
           +++F+ L++
Sbjct: 107 QQEFIRLVE 115


>gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
 gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
          Length = 653

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS-KLEKAQQL 704
           ++  K+  TG      R +        G  + + +SR T  ++  D   GS K  +A   
Sbjct: 225 VQGMKIAVTGE-TATSRAELVARAVAAGLNIMSSVSRHTSALVTNDAASGSAKARRAIAE 283

Query: 705 GVKIMNEEQFLFLLQQ 720
           GV I++E  FL LL +
Sbjct: 284 GVPILDERTFLGLLSE 299


>gi|84488969|ref|YP_447201.1| 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
 gi|84372288|gb|ABC56558.1| predicted 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
          Length = 445

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 14/110 (12%)

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             +      +           S ++E K    TG  +   + K    + + G +    +S
Sbjct: 333 EYINVSKMFLELLSPIKTTVESLDLEGKTYCLTGDFKHGNKAKIVSILEKRGLIKKNCVS 392

Query: 683 RKTDIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718
            K D + VGD         N G K+ KAQQ+      +KI++E+     L
Sbjct: 393 YKLDYLFVGDYGSPAWKYGNIGGKIVKAQQIIDKGAKIKIISEKNLFNEL 442


>gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 345

 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 97/277 (35%), Gaps = 50/277 (18%)

Query: 468 QLERLKHFVSRDA---FNI-EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523
            +  L   V +DA    +I + L  +  D    + + AF        +++  R+     +
Sbjct: 88  WIHGLTTGVLKDAPLFKDISDELSARLADRVLVAHNAAFD-------WSMLAREYARAER 140

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ- 582
           +  +             +I   +          LG+     ++  SLA ++   Q  A  
Sbjct: 141 VAPV--------RQRLCTIALSKE---------LGLPLPNHKL-ESLAAHFGVVQERAHH 182

Query: 583 EINNIIAHNNDDWLSLIRVPLVG---DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
            +++          SL+     G    ++    +  +  P     +        PS  R 
Sbjct: 183 ALDDARVLAEAFRPSLVAAAGGGVRLPLLECRPLTEWSEPPATPRIGRQPSYGGPSSWRP 242

Query: 640 EKNVSSE--------------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
            +   +               ++  ++ F+G     +R   ++  T+ G  V+  LSR T
Sbjct: 243 ARKRPACPYPNPGRYEPGGRLVQGMRIAFSGD-TSTERDLLEDRATEAGLHVATSLSRLT 301

Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +++  D  +  SK  KA+Q G  +++E  F  LLQ 
Sbjct: 302 SLLVTNDPDSGTSKTVKARQFGTPVVDEAAFGQLLQD 338


>gi|262196947|ref|YP_003268156.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
 gi|262080294|gb|ACY16263.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
          Length = 365

 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 14/96 (14%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691
           G         ++ K + F+G L  I+R  A+  V Q G  V+  +SRK D+++ G     
Sbjct: 267 GEEAVPAIRSLQGKTVAFSGALS-IRRFDAEIMVLQAGGTVAHAISRKIDVLVQGGGRSP 325

Query: 692 DNPG---SKLEKAQQL---G--VKIMNEEQFLFLLQ 719
            +PG   SKL + ++L   G  + ++ E +F  L++
Sbjct: 326 RSPGALNSKLRQTKRLIEQGQPICVIGEREFRQLIR 361


>gi|301384682|ref|ZP_07233100.1| hypothetical protein PsyrptM_18697 [Pseudomonas syringae pv. tomato
           Max13]
          Length = 147

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG      R + +E  TQ G  V     +    +  G+N G +K+EKA   G  I++
Sbjct: 75  IVFTG-FNAAIRVELEEKATQFGLKVMKTPGKNLTFLCYGENAGPTKVEKALDAGSFIID 133

Query: 711 EEQFLFLL 718
            ++FL L+
Sbjct: 134 ADEFLSLI 141


>gi|213968049|ref|ZP_03396194.1| hypothetical protein PSPTOT1_4935 [Pseudomonas syringae pv. tomato
           T1]
 gi|213927029|gb|EEB60579.1| hypothetical protein PSPTOT1_4935 [Pseudomonas syringae pv. tomato
           T1]
          Length = 119

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG      R + +E  TQ G  V     +    +  G+N G +K+EKA   G  I++
Sbjct: 47  IVFTG-FNAAIRVELEEKATQFGLKVMKTPGKNLTFLCYGENAGPTKVEKALDAGSFIID 105

Query: 711 EEQFLFLL 718
            ++FL L+
Sbjct: 106 ADEFLSLI 113


>gi|269956916|ref|YP_003326705.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305597|gb|ACZ31147.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 547

 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV-GDNPGSKLEKAQQLGVK 707
              +VFTG      R          G  V   +SRKT  ++  G+  G+K  +A +LG +
Sbjct: 394 GDAVVFTGDFP--SRAALTAKAEAAGLRVVGSVSRKTAALVTDGEFIGNKANRAAELGTR 451

Query: 708 IMNEEQFLFLLQ 719
           I++ + F  LL+
Sbjct: 452 IVSPDDFTVLLR 463


>gi|325957458|ref|YP_004292870.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC]
 gi|325334023|gb|ADZ07931.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC]
          Length = 272

 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 8/116 (6%)

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLV 653
           +   +  V +I  +   EF +  ++I  ++   +  +    S    + + ++   +K + 
Sbjct: 141 ADEDIKSVEEIYIKLQGEFRKQFKSIKELQPKGSDFRLKDVSGDPAKNDKNNAFYDKYVS 200

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQL 704
            TG L    R +  + +  +G         KTD  I G         +KLEKA++L
Sbjct: 201 ATGKLNAYTRKEIAQMINNIGGHFQKNPGEKTDYFIAGKFEGNRGTSNKLEKAKKL 256


>gi|116630207|ref|YP_815379.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           ATCC 33323]
 gi|282852827|ref|ZP_06262168.1| exonuclease [Lactobacillus gasseri 224-1]
 gi|116095789|gb|ABJ60941.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus gasseri ATCC 33323]
 gi|282555935|gb|EFB61556.1| exonuclease [Lactobacillus gasseri 224-1]
          Length = 320

 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 17/172 (9%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD--IIAQAIVEFYQNPRNICAVE 626
            LA+ +   +   + ++ +   N  +      +    D   +     + ++    + A E
Sbjct: 150 RLARSFYPQERHNRLLDCMHRMNIAENQEHRGLDDCLDTKKVFDEFHKLFKQEHMLRAQE 209

Query: 627 ALLK----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
           A+         P I +  +   S   +KK+V  G L  +  ++    V  LG  +   + 
Sbjct: 210 AVKTLDLTSEWPDIVKQTQAFHSPFIHKKVVIAGDLD-LDEYELTNVVKNLGGFIQEEVG 268

Query: 683 RKTDIIIVGD-----NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
             TD ++VGD        ++L KA+ L      ++  +E  FL +L  +  +
Sbjct: 269 LDTDYVLVGDHDFFRTDVTELNKARALKKQGQNIRTWSESFFLNVLDNWARS 320


>gi|306836447|ref|ZP_07469422.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
 gi|304567666|gb|EFM43256.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
          Length = 454

 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
               +A+    +      + +    +  + +  TG  +   +    + + + G  V   +
Sbjct: 343 RAPWQAVATPDTIPDPNPDADPKGALYGQHVTLTGDFEPYDKGLLWQGIAKRGGQVGKNV 402

Query: 682 SRKTDIIIVGD--NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
           ++KT +++VG+     SK ++A++L      + + +  Q    L+
Sbjct: 403 TKKTTLLVVGEWAKKTSKEKRAEELQEKGQDITMWSGAQLFSELE 447


>gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
 gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
          Length = 417

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIM 709
           +V TG + +  R + +  +   G V    ++++  +++  D  +   K  KA+  G+ ++
Sbjct: 348 IVLTGEMSR-TRDEIEATIVGFGFVPWRAVTKRVRLLVAADPDSLSGKARKARDYGIPVV 406

Query: 710 NEEQFLFLL 718
           +E   + LL
Sbjct: 407 DEAGLVRLL 415


>gi|330503081|ref|YP_004379950.1| NAD-dependent DNA ligase [Pseudomonas mendocina NK-01]
 gi|328917367|gb|AEB58198.1| NAD-dependent DNA ligase [Pseudomonas mendocina NK-01]
          Length = 212

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 14/81 (17%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKL 698
           + +  VFTGT+    R   Q+ V + G ++   +++KT  ++VG          + G K+
Sbjct: 126 DGRLYVFTGTMAYGPRKACQQLVEERGGLIGGGVNKKTHYLVVGSIGNEQWRHSSYGLKI 185

Query: 699 EKAQQL---GVK--IMNEEQF 714
            KA +L   G    I+ E+ +
Sbjct: 186 MKAVELRESGTPISIVGEDTW 206


>gi|213649438|ref|ZP_03379491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 35

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 27/35 (77%)

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           R  + ++IDG+V KVDE +LQ++LG  +R+PRW I
Sbjct: 1   RHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAI 35


>gi|167567824|ref|ZP_02360740.1| Transposase and inactivated derivatives-like protein [Burkholderia
           oklahomensis EO147]
          Length = 248

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 15/96 (15%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----- 692
             + N    +  +++VFTGTL  ++R +A       G  V A + + T +++VGD     
Sbjct: 151 AMKGNPDGVLAGEEMVFTGTLTLLRR-EAAALAAMAGCDVVASVRKTTTLLVVGDQDIQR 209

Query: 693 ----NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
                   K +KA++L      ++I+ E  FL ++ 
Sbjct: 210 LAGHEKSLKHQKAEELIAKGQAIRILKESDFLRIVN 245


>gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 324

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 97/277 (35%), Gaps = 50/277 (18%)

Query: 468 QLERLKHFVSRDA---FNI-EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523
            +  L   V +DA    +I + L  +  D    + + AF        +++  R+     +
Sbjct: 67  WIHGLTTGVLKDAPLFKDISDELSARLADRVLVAHNAAFD-------WSMLAREYARAER 119

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ- 582
           +  +             +I   +          LG+     ++  SLA ++   Q  A  
Sbjct: 120 VAPV--------RQRLCTIALSKE---------LGLPLPNHKL-ESLAAHFGVVQERAHH 161

Query: 583 EINNIIAHNNDDWLSLIRVPLVG---DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
            +++          SL+     G    ++    +  +  P     +        PS  R 
Sbjct: 162 ALDDARVLAEAFRPSLVAAAGGGVRLPLLECRPLTEWSEPPATPRIGRQPSYGGPSSWRP 221

Query: 640 EKNVSSE--------------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
            +   +               ++  ++ F+G     +R   ++  T+ G  V+  LSR T
Sbjct: 222 ARKRPACPYPNPGRYEPGGRLVQGMRIAFSGD-TSTERDLLEDRATEAGLHVATSLSRLT 280

Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +++  D  +  SK  KA+Q G  +++E  F  LLQ 
Sbjct: 281 SLLVTNDPDSGTSKTVKARQFGTPVVDEAAFGQLLQD 317


>gi|227505453|ref|ZP_03935502.1| possible exonuclease, RNase T and DNA polymerase III
           [Corynebacterium striatum ATCC 6940]
 gi|227197946|gb|EEI77994.1| possible exonuclease, RNase T and DNA polymerase III
           [Corynebacterium striatum ATCC 6940]
          Length = 1118

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 20/187 (10%)

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI-IAQAIVEFYQNPRN 621
             +  + LA   +  +    EI  +      + L+   V  + +  I Q  VE + +   
Sbjct: 225 AEKYKKLLAAALVDKELSKSEIAQLQNQAQQEGLTSNDVMSIHEEFIRQLAVEAWMDGEV 284

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIE---------------NKKLVFTGTLQKIQRHKA 666
                A L  ++  +G       + +                  ++ FTG    + R + 
Sbjct: 285 TEEERATLLLLNEQLGLPADTAEALLAAPQRGESELGISLSAGDRVTFTGQFD-LPREEW 343

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +     +G  V   +++K+ +++    D+   K  KA++ GV I+ E  F  LL   +  
Sbjct: 344 ERRAMAVGLSV-GGVTKKSVLLVAANPDSMSGKARKAREYGVPIIGETAFARLLSNMSGG 402

Query: 725 LRIHDDD 731
            ++ + D
Sbjct: 403 GQLVEQD 409


>gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
 gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
 gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
          Length = 331

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 9/169 (5%)

Query: 567 ARSLAKYYLSYQNFAQ----EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           AR LA+ +      A      +  +      +W      P +G                 
Sbjct: 166 ARVLAEAFRPSLRAAALGGVRLPLLECRPLTEWSDSPARPTIGRQYGGQYGSRPAAGNWR 225

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            +         P+ GR  ++    ++  ++ F+G     +R   ++  T+ G  V+  +S
Sbjct: 226 PS-RKRPPCPYPNPGR-WQDGQPLVQGMRIAFSGD-TSTERELLEDRATEAGLHVAGSIS 282

Query: 683 RKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           R T +++  D  +  SK  +A+Q G  +++E  F  LL+     +R+  
Sbjct: 283 RLTSLLVTNDPDSGTSKTVRARQYGTPVIDEAAFGQLLRDVAPAVRVEG 331


>gi|300780873|ref|ZP_07090727.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC
           33030]
 gi|300532580|gb|EFK53641.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC
           33030]
          Length = 389

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSK 697
           + + +S +  + +  TG      + +  + +   G  V   +++KT I++ G+     SK
Sbjct: 296 DADPNSPLYGQNVTLTGEFDPFDKGQLWDGIANQGGQVGKNVTKKTTILVTGEWATMTSK 355

Query: 698 LEKAQQL-----GVKIMNEEQFLFLL 718
            ++A++L      + I   E+ L +L
Sbjct: 356 EKRARELMDKGQDIDIWPAEKLLNVL 381


>gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 334

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 15/164 (9%)

Query: 567 ARSLAKYYL-SYQNFAQE---INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           AR LA+ +  S    A++   +  +      +W      P +G   +     +  +    
Sbjct: 178 ARVLAEAFRPSLHAAARDGVRLPLLECRPLTEWSDSAVTPRIGYQSSYRGGGWRPS---- 233

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
                      P+ GR E     + +  ++ F+G    ++R   ++   + G  ++  +S
Sbjct: 234 ---RKRPACPHPNPGRFEDGKPLK-QGMRIAFSGD-TSVERELLEDRAVEAGLHIATSVS 288

Query: 683 RKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           R T +++  D  +  SK  KA+  G  +++E  F  LL+     
Sbjct: 289 RLTSLLVTNDPDSATSKTVKAKSFGTPVVDEAAFTQLLRDVAAA 332


>gi|145631925|ref|ZP_01787680.1| hypothetical protein CGSHi22421_00747 [Haemophilus influenzae
           R3021]
 gi|145642324|ref|ZP_01797887.1| hypothetical protein CGSHiR3021_00587 [Haemophilus influenzae
           R3021]
 gi|260582516|ref|ZP_05850307.1| NAD-dependent DNA ligase [Haemophilus influenzae NT127]
 gi|144982430|gb|EDJ90000.1| hypothetical protein CGSHi22421_00747 [Haemophilus influenzae
           R3021]
 gi|145272981|gb|EDK12864.1| hypothetical protein CGSHiR3021_00587 [Haemophilus influenzae
           22.4-21]
 gi|260094496|gb|EEW78393.1| NAD-dependent DNA ligase [Haemophilus influenzae NT127]
          Length = 162

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 606 DIIAQAIVEFYQNPRNICAV-EALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQR 663
           D I +  V F         + E +  +    +   +   S  I+      FTG   K Q+
Sbjct: 38  DRIIKEFVNFDDAQHYAENLPEEIFIQFDQKLNAIKHIPSKPIQHPLTFCFTG-FSKAQK 96

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG----SKLEKAQQLGVKIMNEEQFLFLLQ 719
               +   Q+G      ++ K D +++ +N      SK  KA+ LGVK++ E QF  L++
Sbjct: 97  QALIDLTIQVGLRAIQDVTSKCDYLVMCENSKTIGPSKRAKAESLGVKLIFENQFFHLIE 156

Query: 720 QYNT 723
               
Sbjct: 157 TGEI 160


>gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
 gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
          Length = 333

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 567 ARSLAKYYL-SYQNFAQ---EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           AR LA+ +  S    A+    +  +      +W      P VG   ++    +  +    
Sbjct: 166 ARVLAEAFRPSLHAAARGGVRLPLLECRPLTEWTDSPVAPRVGYQPSRGQGTWRAS---- 221

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
                      P+ GR+E +    ++  ++ F+G    + R   ++   + G  V+  +S
Sbjct: 222 ---RKRPACPYPNPGRYESDKP-LVQGMRVAFSGD-TSVDRELLEDRAVEAGLHVATSVS 276

Query: 683 RKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R T +++  D     SK  KA+  G  I+ E  F  LL+ 
Sbjct: 277 RLTSLLVTNDPDAATSKTVKAKSFGTPILEESAFTHLLRD 316


>gi|227501930|ref|ZP_03931979.1| possible exonuclease [Corynebacterium accolens ATCC 49725]
 gi|227077314|gb|EEI15277.1| possible exonuclease [Corynebacterium accolens ATCC 49725]
          Length = 1118

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 69/187 (36%), Gaps = 20/187 (10%)

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRN 621
             +  + LA   +  +    EI  +      + L+   V  +  D I Q  VE + +   
Sbjct: 225 AEKYKKLLAAALVDKELSKSEIAELQNQAQQEGLTSNDVMSIHEDFIRQLAVEVWLDGEV 284

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIE---------------NKKLVFTGTLQKIQRHKA 666
                A L  ++  +G       + +                  ++ FTG    + R + 
Sbjct: 285 TEEERATLLLLNEQLGLPADTAEALLAAPQRGESELGISLSVGDRVTFTGQFD-LPREEW 343

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +     +G  V   +++K+ +++    D+   K  KA++ GV I+ E  F  LL   +  
Sbjct: 344 ERRAMAVGLSV-GGVTKKSVLLVAANPDSMSGKARKAREYGVPIIGETTFARLLGNMSGG 402

Query: 725 LRIHDDD 731
            ++ + D
Sbjct: 403 GQLVEQD 409


>gi|291164964|gb|ADD80993.1| gp102 [Rhodococcus phage ReqiPepy6]
          Length = 542

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  L   I  H   YY+  + I+ D E+D L      +   +P+
Sbjct: 19 RIQQLRMRILVHSYLYYELDQNILTDREFDTLAYELVDLQKRYPE 63


>gi|145639951|ref|ZP_01795550.1| hypothetical protein CGSHiII_06993 [Haemophilus influenzae PittII]
 gi|145270917|gb|EDK10835.1| hypothetical protein CGSHiII_06993 [Haemophilus influenzae PittII]
 gi|309751665|gb|ADO81649.1| Hypothetical protein R2866_1731 [Haemophilus influenzae R2866]
          Length = 168

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 606 DIIAQAIVEFYQNPRNICAV-EALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQR 663
           D I +  V F         + E +  +    +   ++  S  I+      FTG   K Q+
Sbjct: 44  DRIIKEFVNFDDAQHYAENLPEEIFTQFDQKLNAIKRIPSKPIQHPLTFCFTG-FSKAQK 102

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG----SKLEKAQQLGVKIMNEEQFLFLLQ 719
               +   Q+G      ++ K D +++ +N      SK  KA+ LGVK++ E QF  L++
Sbjct: 103 QALIDLTIQVGLRAIQDVTSKCDYLVMCENSKTIGPSKRAKAESLGVKLIFENQFFHLIE 162

Query: 720 QYNT 723
               
Sbjct: 163 TGEI 166


>gi|254574486|ref|XP_002494352.1| DNA Polymerase II Epsilon complex with BRCT domain [Pichia pastoris
           GS115]
 gi|238034151|emb|CAY72173.1| DNA Polymerase II Epsilon complex with BRCT domain [Pichia pastoris
           GS115]
 gi|328353831|emb|CCA40228.1| DNA polymerase II complex component [Pichia pastoris CBS 7435]
          Length = 620

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F +        E  L+     +      +    E  ++  T T +  QR + Q+ +   G
Sbjct: 67  FLRPKSIKEIYEEWLQGTRKELSFSGSELP-VFEGLRVCLTRTKEPSQREEFQKLIEDRG 125

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             VS  L+     I+  +  G + EKA +  +  ++
Sbjct: 126 GKVSEALTMGKSCIVTSEKSGKRYEKALEWKIPTLD 161


>gi|237733311|ref|ZP_04563792.1| 3'-5' exonuclease [Mollicutes bacterium D7]
 gi|229383692|gb|EEO33783.1| 3'-5' exonuclease [Coprobacillus sp. D7]
          Length = 443

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 42/87 (48%), Gaps = 14/87 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697
           ++NK +  TG     +R + ++ +     ++S  +++K D +++G            G+K
Sbjct: 354 VKNKVICLTGNFCFGERSQLEKLIVLKQGIISKSVTKKVDYLVLGSKGSAGYKYGKYGAK 413

Query: 698 LEKA-----QQLGVKIMNEEQFLFLLQ 719
             KA     +   +++++E + + +L+
Sbjct: 414 TNKALTMKSEGHKIELISEARLMEVLK 440


>gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
 gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
          Length = 443

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 42/87 (48%), Gaps = 14/87 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697
           ++NK +  TG     +R + ++ +     ++S  +++K D +++G            G+K
Sbjct: 354 VKNKVICLTGNFCFGERSQLEKLIVLKQGIISKSVTKKVDYLVLGSKGSAGYKYGKYGAK 413

Query: 698 LEKA-----QQLGVKIMNEEQFLFLLQ 719
             KA     +   +++++E + + +L+
Sbjct: 414 TNKALTMKSEGHKIELISEARLMEVLK 440


>gi|296100338|ref|YP_003620507.1| hypothetical protein LKI_10796 [Leuconostoc kimchii IMSNU 11154]
 gi|295831655|gb|ADG39538.1| hypothetical protein LKI_10796 [Leuconostoc kimchii IMSNU 11154]
          Length = 93

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS--------KL 698
           +  + ++FTG L  + R +AQ+    LGA     +++K   +I G    S        K+
Sbjct: 4   LSQQPIIFTGKLNSLTRLQAQQLAAMLGAFPQTNMNQKIKYVIAGQIEQSMFEILTTKKI 63

Query: 699 EKAQQLGVKIMNEEQFLFL----LQQYNT 723
           + A+   V+I+NE +FL      LQQ N+
Sbjct: 64  KYAETHSVEILNESEFLKWCIWRLQQKNS 92


>gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 329

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
                   P+ GR  ++    ++  ++ F+G     +R   ++  T+ G  V+  +SR T
Sbjct: 226 RKRPPCPYPNPGR-WQDGQPLVQGMRIAFSGD-TSTERELLEDRATEAGLHVAGSISRLT 283

Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
            +++  D  +  SK  +A+Q G  +++E  F  LL+     +R+  
Sbjct: 284 SLLVTNDPDSGTSKTVRARQYGTPVIDEAAFGQLLRDVAPAVRVEG 329


>gi|88799180|ref|ZP_01114760.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like
           protein [Reinekea sp. MED297]
 gi|88778163|gb|EAR09358.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like
           protein [Reinekea sp. MED297]
          Length = 296

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 14/90 (15%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---- 694
               +    + + + FTG+     R +       +GA++S  +++  D +++G+      
Sbjct: 201 KNDELPYSFKGRSVCFTGSFVSGTRRRHATIAESIGALISKSVTKNLDYLVIGNVASRDW 260

Query: 695 -----GSKLE---KAQQLG--VKIMNEEQF 714
                G K+E   K +  G   +I+ E+ +
Sbjct: 261 IQKSYGRKIETVIKNRNEGAKTRILTEKDW 290


>gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 346

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLG 705
           +  ++ F+G    I R   ++   + G  V+  +SR T +++  D  +  SK  KA+  G
Sbjct: 256 QGMRVAFSGD-TSIDRELLEDRAVEAGLHVATSVSRLTSLLVTNDPDSATSKTVKAKSFG 314

Query: 706 VKIMNEEQFLFLLQQ 720
             ++ E  F  LL+ 
Sbjct: 315 TPVLEESAFTHLLRD 329


>gi|291165072|gb|ADD81100.1| gp102 [Rhodococcus phage ReqiPoco6]
          Length = 541

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  L   I  H   YY+  + I+ D E+DAL      +   +P+
Sbjct: 19 RIQHLRIRILVHSYLYYEMDQNILTDREFDALAYELVDLQKRYPE 63


>gi|227503316|ref|ZP_03933365.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49725]
 gi|227075819|gb|EEI13782.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49725]
          Length = 470

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
               +A+    +      + +    +  + +  TG  +   +    + + + G  V   +
Sbjct: 359 RAPWQAVATPDTIPDPNLDADPQGALYGQHVTLTGDFEPYDKGLLWQGIAKRGGQVGKNV 418

Query: 682 SRKTDIIIVGD--NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
           ++KT +++VG+     SK ++A++L      + + +  Q    L+
Sbjct: 419 TKKTTLLVVGEWAKKTSKEKRAEELQEKGQDITMWSGAQLFSELE 463


>gi|115531716|ref|YP_784242.1| NAD+-dependent DNA ligase [Crocodilepox virus]
 gi|115521069|gb|ABJ08943.1| NAD+-dependent DNA ligase [Crocodilepox virus]
          Length = 360

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 77/201 (38%), Gaps = 20/201 (9%)

Query: 107 LRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSAC 166
           L +++                F +  K+DG  + +    G       RG    G+D++  
Sbjct: 166 LLEWLCNEQEVEDWLSGTDCDFIVTHKLDGVSVVLVVGTGGQRRLYARGTVSHGQDITHL 225

Query: 167 IRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR 226
           + ++  +PR      P  + VRG       D L + +  ++ G +     R    G    
Sbjct: 226 LPSVTNLPRF--SRPPSQMVVRG-------DLLLIAEAGVSAGARSAQLARAVCGG---- 272

Query: 227 LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN 286
               ++   L F  HG+   S++    Q   L  +R +     + VR+ +    ++ ++ 
Sbjct: 273 ----EVVPGLRFVAHGMP-GSDLPPVQQMATL-FVRGIETVGYSFVRRGDMSSRLLQHHM 326

Query: 287 EMKSIRSTLPYDIDGLVYKVD 307
           EM   R   PYD++GLV   +
Sbjct: 327 EMVRARLP-PYDLEGLVVCCN 346


>gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 327

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 9/161 (5%)

Query: 567 ARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
           AR LA+ +  S +  A     +  H           P  G   A         P      
Sbjct: 170 ARVLAEAFRPSLRAAAASGVRLPLHECRPLTEWTDRPRTGQQAAPGGYR----PTGWRPS 225

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
                   P+ GR+      + +  ++ F+G    ++R   ++  T+ G  V+  LSR T
Sbjct: 226 RRRPACPYPNPGRYAPGGRLK-QGMRVAFSGD-TSVERELLEDRATEAGLHVATSLSRLT 283

Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            +++  D  +  SK  KA+Q G  +++E  F  LL+     
Sbjct: 284 SLLVTNDPDSGTSKAVKARQYGTPVVDEAAFGQLLEDVEPA 324


>gi|227833455|ref|YP_002835162.1| hypothetical protein cauri_1631 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184446|ref|ZP_06043867.1| hypothetical protein CaurA7_10673 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454471|gb|ACP33224.1| hypothetical protein cauri_1631 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 461

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-- 694
              + +    +  + +  TG  +   +      + + G  V   +++KT I++VG     
Sbjct: 365 PNPDADPEGALFGQNVTLTGDFEPFDKGLLWSKIAERGGQVGKNVTKKTTILVVGQWATK 424

Query: 695 GSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
            SK ++A++L      + I   ++ L  LQ
Sbjct: 425 TSKEKRAEELQGKGQDIAIWQTDKLLEELQ 454


>gi|297157618|gb|ADI07330.1| NAD-dependent DNA ligase LigA [Streptomyces bingchenggensis BCW-1]
          Length = 858

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMNEEQF 714
           G   K+    A+  +  LGA VS  +S +TD++    + PG K+  A   G+ I +E+  
Sbjct: 2   GRFHKLPHTTAKAGLEALGARVSGSVSDRTDLVFAAHDVPGRKIGAASTRGIPIYDEKAL 61

Query: 715 LFLLQ 719
             +L+
Sbjct: 62  RAVLK 66


>gi|153812315|ref|ZP_01964983.1| hypothetical protein RUMOBE_02714 [Ruminococcus obeum ATCC 29174]
 gi|149831477|gb|EDM86564.1| hypothetical protein RUMOBE_02714 [Ruminococcus obeum ATCC 29174]
          Length = 42

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 682 SRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + KT+ +I  D  +  SK +KA++LG+ I++EE FL L ++
Sbjct: 2   TGKTNYLINNDVTSNSSKNKKARELGIPILSEEDFLKLAER 42


>gi|297561085|ref|YP_003680059.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296845533|gb|ADH67553.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 335

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--- 695
            + + +  +  + +  +G L+ + + +    V + G   +  ++RKTD++++G + G   
Sbjct: 241 PDADPTGPLYGRTVCVSGDLESMDKPEVWRRVAEAGGRPAKNVTRKTDMLVLGGHGGPGK 300

Query: 696 -SKLEKAQ---QLG--VKIMNEEQFLFLL 718
            +K  +A+   + G  + ++ E + L LL
Sbjct: 301 TAKHLRAEIYRERGQRIDLVTEAELLALL 329


>gi|530483|emb|CAA83831.1| DNA ligase [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 42

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 2/44 (4%)

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           A RG+G  GEDV+  +R I +IP  L ++  E +EVRGE+Y+SK
Sbjct: 1   ATRGNGVIGEDVTTNVRTIKSIP--LKISKKERVEVRGEIYLSK 42


>gi|38234148|ref|NP_939915.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200410|emb|CAE50098.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           diphtheriae]
          Length = 448

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP 694
              + +    +  + +  +G      + +    +   G ++   +++KT I++ G  D P
Sbjct: 349 PNPDADPQGRLFGQSVTLSGDFAPYDKGELWAGIANQGGIIGKNVTKKTTILVCGPWDKP 408

Query: 695 GSKLEKAQQL-----GVKIMNEEQFLFLL 718
            SK ++A++L      + +  +E     L
Sbjct: 409 TSKQKRAEELRAKGQEIDLWTQEDLFAQL 437


>gi|152987028|ref|YP_001347760.1| NAD-dependent DNA ligase [Pseudomonas aeruginosa PA7]
 gi|150962186|gb|ABR84211.1| NAD-dependent DNA ligase [Pseudomonas aeruginosa PA7]
          Length = 216

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 14/85 (16%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GS 696
           E      VFTG +    R   +E V   G  +++ +S+K   ++VG+           G+
Sbjct: 126 EWSGHLYVFTGVMVYGPRKHCEEIVVNRGGGIASGISKKVHYLVVGEIGNEQWLHSTYGT 185

Query: 697 KLEKAQQLG-----VKIMNEEQFLF 716
           K+++A +L      + I++E+ +  
Sbjct: 186 KIKRAVELREEGHPIAIISEKHWQA 210


>gi|300779659|ref|ZP_07089515.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300533769|gb|EFK54828.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 959

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 5/170 (2%)

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG RH+       LA++        +++  I         S   V  V     +  +   
Sbjct: 268 LGDRHLTPAEFYGLARFAHDTGLTEEDVAKIHEEFIRQIASKAWVDGVITEREKTELCTL 327

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK-KLVFTGTLQKIQRHKAQEYVTQLGA 675
                +          +P +         E+    ++ FTG++  + R + +      G 
Sbjct: 328 AEQLAVDPALVHELIATPQMDNDHDEEWVELIPHDRIAFTGSMD-VSREEWRTRALSHGL 386

Query: 676 VVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            V   + + T +++    D    K  +A++L + I++E  F  LL    T
Sbjct: 387 TV-GGVGQNTALLVAANPDTMSRKARRARELNIPIVSELHFSRLLASMET 435


>gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 330

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 12/164 (7%)

Query: 567 ARSLAKYYLSYQNFAQE----INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           AR LA+ +      A      +  +      +W      P +G    QA    Y+     
Sbjct: 170 ARVLAEAFQPSLRAAAAGGVRLPLLECRPLTEWSDRPATPRIGQ---QAGYGGYRPTSWR 226

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            +         P+ GR+E     + +  ++ F+G     +R   ++  T  G  V+  LS
Sbjct: 227 PS-RKRPACPYPNPGRYEPGGRLK-QGMRVAFSGD-TSTERELLEDRATDAGLHVATSLS 283

Query: 683 RKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           R T +++  D  +  SK+ KA+Q G  +++E  F  LL      
Sbjct: 284 RLTSLLVTNDPDSGTSKVVKARQFGTPVVDEAAFGQLLADVEPA 327


>gi|4204105|gb|AAD10576.1| Siginificant homology to DNA ligase M74792 [Mycoplasma genitalium]
          Length = 50

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           H+ P LSLE  ++ +++  FI  I      + ++   F +EPKIDG  I++ 
Sbjct: 3   HNSPMLSLENAFSTKEIANFIDNI----NFQTNSKNEFVVEPKIDGVSISLT 50


>gi|149926285|ref|ZP_01914547.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like
           protein [Limnobacter sp. MED105]
 gi|149825103|gb|EDM84315.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like
           protein [Limnobacter sp. MED105]
          Length = 286

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 18/92 (19%)

Query: 647 IENKKLVFTGTLQKIQ--RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------G 695
           IE   LVFTG        R   +E V  LG V+ A ++ KT+ ++VGD           G
Sbjct: 193 IEGSVLVFTGKFGGKTGFRKVIEERVVGLGGVLRASVTTKTNYLVVGDETAVGWITSTYG 252

Query: 696 SKLEKAQQL------GVKIMNEEQFLFLLQQY 721
            K++ A  L       ++++ E+  L L++ +
Sbjct: 253 RKIQAAMDLRKADAPNLRVLTEQN-LRLVRPH 283


>gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
 gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
          Length = 611

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
            +        S  ++  K+VFTG  ++  R          G  V    S +T +++    
Sbjct: 221 WAWPGRWDGASPWVQGMKIVFTGPTERP-RDDLVRLAVGAGLDVMNSASSRTSVVVCATP 279

Query: 694 P--GSKLEKAQQLGVKIMNEEQFLFLL 718
                KL  A+  G++I++E  FL L+
Sbjct: 280 AATTRKLAAARAHGIEIVDERVFLDLV 306


>gi|116200486|ref|XP_001226055.1| hypothetical protein CHGG_10788 [Chaetomium globosum CBS 148.51]
 gi|88175502|gb|EAQ82970.1| hypothetical protein CHGG_10788 [Chaetomium globosum CBS 148.51]
          Length = 1409

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKAQ 702
           +E   +V +GT         +  V  LGA ++  ++     ++  +     P  K+ KA+
Sbjct: 17  LEGCTIVLSGTFPGATHATIKARVEALGATLATSVTGDATHLVATESDYKKPSPKVTKAK 76

Query: 703 QLGVKIMNEEQFLFLLQQYNT 723
            L + I+  + +L   +Q   
Sbjct: 77  SLDIHIVGLD-WLSACEQNGA 96


>gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 327

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
                   P+ GR+E     + +  ++ F+G    I+R   ++   + G  V+  +SR T
Sbjct: 226 RKRPACPYPNPGRYEDGKPLK-QGMRIAFSGD-TSIERDLLEDRAIEAGLHVATSISRLT 283

Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            +++  D  +  SK+ KA+Q G  +++E  F  LL+     
Sbjct: 284 SLLVTNDPDSGTSKVVKARQFGTPVVDEAAFGQLLRDVEPA 324


>gi|305681196|ref|ZP_07404003.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659401|gb|EFM48901.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
          Length = 444

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP 694
              + + +  +    +  TG  +   + +  E +  +GA V+  +++KT ++++G  D+ 
Sbjct: 339 PNPDADPNHPLFGHVITLTGDFEPYDKGELWEKMAAVGATVAKNVTKKTTMLVMGPWDSV 398

Query: 695 GSKLEKAQQL 704
            SK ++A++L
Sbjct: 399 TSKQKRAEEL 408


>gi|225021962|ref|ZP_03711154.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945248|gb|EEG26457.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 456

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP 694
              + + +  +    +  TG  +   + +  E +  +GA V+  +++KT ++++G  D+ 
Sbjct: 351 PNPDADPNHPLFGHVITLTGDFEPYDKGELWEKMAAVGATVAKNVTKKTTMLVMGPWDSV 410

Query: 695 GSKLEKAQQL 704
            SK ++A++L
Sbjct: 411 TSKQKRAEEL 420


>gi|224007511|ref|XP_002292715.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971577|gb|EED89911.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1233

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEKAQQ 703
           +++ R  A + V  LG  V++ +S KTD ++VG           GSK  KA +
Sbjct: 372 EELARDLASDLVLSLGGKVTSAVSGKTDYLVVGSILEDGREVEEGSKYRKALE 424


>gi|295425759|ref|ZP_06818444.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
 gi|295064567|gb|EFG55490.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
          Length = 318

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 17/171 (9%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ Y   +   + I+ +             +    D   +   +F+ +      V+A 
Sbjct: 150 RLARAYYPKERHNRLIDCMQRAGIAQVEQHRGLDDSIDTK-KVYDDFHAHFTPNLLVQAQ 208

Query: 629 LKEVSPSIGRH-----EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            K  + S+        +    + + NKK+V T  L K+    A + +  LG      L+ 
Sbjct: 209 KKIKNFSLTDEKLSPWQIGFRNPVNNKKIVLTDHL-KMNLEDANKMIDNLGGQAQGRLAM 267

Query: 684 KTDIIIVGD-NPGSK----LEKAQQLG-----VKIMNEEQFLFLLQQYNTT 724
           +T+ +I+GD +  S+    L KAQ+L      +K ++E  FL +L  +  +
Sbjct: 268 ETNYLILGDHDFFSRDNNDLNKAQELNHEGADIKHLSESFFLNMLDNWARS 318


>gi|330977977|gb|EGH77880.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 210

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 12/69 (17%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
            +FTGT+    R   +E V + G  + + L++KT  +IVG          + G K++KA 
Sbjct: 128 FMFTGTMAYGPRKHCEELVLERGGQICSGLTKKTSFLIVGSLGNDQWLHSSYGLKIKKAV 187

Query: 703 QL---GVKI 708
           +L   GV I
Sbjct: 188 ELREAGVPI 196


>gi|289675448|ref|ZP_06496338.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. syringae FF5]
          Length = 210

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 12/69 (17%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
            +FTGT+    R   +E V + G  + + L++KT  +IVG          + G K++KA 
Sbjct: 128 FMFTGTMAYGPRKHCEELVLERGGQICSGLTKKTSFLIVGSLGNDQWLHSSYGLKIKKAV 187

Query: 703 QL---GVKI 708
           +L   GV I
Sbjct: 188 ELREAGVPI 196


>gi|325674696|ref|ZP_08154383.1| hypothetical protein HMPREF0724_12165 [Rhodococcus equi ATCC 33707]
 gi|325554282|gb|EGD23957.1| hypothetical protein HMPREF0724_12165 [Rhodococcus equi ATCC 33707]
          Length = 460

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 26/143 (18%)

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN--ATLHNEDYIKGLDASGK 387
           FAE +   ++ DI + + R G + P      V +         A  +  D I  L     
Sbjct: 315 FAESETEMKVSDIRVLVDRQGYVKPF-----VMLNDRSAHRMVAVPYEYDEILRLG---- 365

Query: 388 VMRGGRDIRVGDRVL-VKRAG-EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  + +GD V  ++ A  +V  +++  IV+ R      F  P+ CP C S +    
Sbjct: 366 -------VLIGDSVQCIQLASRDV--RILGPIVDVRDGTECHFEMPTECPRCGSALTVGS 416

Query: 446 NPKTGKLVAAHRCTGGLACSAQQ 468
             K G     +RC   L+C +++
Sbjct: 417 LVKIGTT---YRCEN-LSCPSRR 435


>gi|116326592|ref|YP_796513.1| hypothetical protein LACR_C46 [Lactococcus lactis subsp. cremoris
           SK11]
 gi|76574947|gb|ABA47416.1| conserved hypothetical protein [Lactococcus lactis]
 gi|116108960|gb|ABJ74082.1| hypothetical protein LACR_C46 [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 98

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 14/88 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV---------GDNPGSK 697
           +EN+  VFT TL  + R +AQ  +T L       +++ T  ++          G  P  K
Sbjct: 2   LENEYFVFTSTLTTMIRKQAQSIITGLKGHNQNSVTKNTTRLVTGYFPIDLIKGYRPSQK 61

Query: 698 L---EKAQQLG--VKIMNEEQFLFLLQQ 720
           L   ++A+Q G  + +M E+QF+  L Q
Sbjct: 62  LSEAKQAEQRGQQIIMMTEKQFIDFLAQ 89


>gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 332

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 14/160 (8%)

Query: 567 ARSLAKYYL-SYQNFAQE---INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           AR LA+ +  S    A++   +  +      +W      P VG          Y N  + 
Sbjct: 174 ARVLAEAFRPSLHAAARDGVRLPLLECRPLTEWSDSPATPRVG------YQSSYGNGGSW 227

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            A         P+ GR E       +  ++ F+G    + R   ++   + G  ++  +S
Sbjct: 228 RASRKRPPCPYPNPGRFEDGKPLR-QGMRIAFSGD-TSVDRELLEDRAVEAGLHIATSVS 285

Query: 683 RKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R T +++  D  +  SK  +A+  G  I++E  F  LL+ 
Sbjct: 286 RLTSLLVTNDPDSSTSKTVRAKSYGTPIVDEAAFTQLLRD 325


>gi|300858788|ref|YP_003783771.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686242|gb|ADK29164.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206493|gb|ADL10835.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis C231]
 gi|302331048|gb|ADL21242.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276735|gb|ADO26634.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 453

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQ 702
             +  + +  TG  +   + K  + + + G  +   +++KT I++ G      SK ++A+
Sbjct: 362 GRLFQQNVTLTGDFEPFDKGKLWDSIAEQGGTIGKNVTKKTTILVCGPWASKTSKQKRAE 421

Query: 703 QL-----GVKIMNEEQFLFLL 718
           +L      ++I   E     L
Sbjct: 422 ELIDKGQNIQIWTAEDLFAQL 442


>gi|154291124|ref|XP_001546148.1| predicted protein [Botryotinia fuckeliana B05.10]
 gi|150847097|gb|EDN22290.1| predicted protein [Botryotinia fuckeliana B05.10]
          Length = 681

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
            N  + +  +  V +GTL  + R   ++     GA  S  +++ T  +++GDNP +K  K
Sbjct: 557 DNTGTFLAGRTFVVSGTLPTVGRINTEKLSRLYGAKTSRAITKATTDVVLGDNPLAKQVK 616

Query: 701 A-QQLGVKIMNEEQFLFLL 718
             + L    M+ + F+ +L
Sbjct: 617 ELKDLSPNTMDVDAFIAML 635


>gi|213965286|ref|ZP_03393483.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
 gi|213952138|gb|EEB63523.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
          Length = 545

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
              +A     +      + + S  +  +++  TG      +    + +   GA ++  ++
Sbjct: 394 AKWDAAKTPDTIPDPNPDADPSGLLYQQRVTLTGDFAPYDKGFLWDKIAFAGANINKGVT 453

Query: 683 RKTDIIIVG--DNPGSKLEKAQQLG-----VKIMNEEQFLFLL 718
           +KT I++ G  D+  SK ++A+QL      ++I  E++    L
Sbjct: 454 KKTTILVAGPWDSVTSKEKRARQLQAEGQEIQIWTEKELFTAL 496


>gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 314

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 9/161 (5%)

Query: 567 ARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
           AR LA+ +  S +  A     +  H           P +G    QA    Y+      + 
Sbjct: 157 ARVLAEAFRPSLRAAAAGGVRLPLHECRPLTEWTERPRIGQ---QAGPGGYRPASWRPS- 212

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
                   P+ GR+E     + +  ++ F+G     +R   ++   + G  V+  LSR T
Sbjct: 213 RKRPACPYPNPGRYEPGGRLK-QGMRVAFSGD-TSTERDLLEDRAAEAGLHVATSLSRLT 270

Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            +++  D  +  SK+ KA+Q G  +++E  F  LL      
Sbjct: 271 SLLVTNDPESGTSKVVKARQYGTPVVDEAAFGQLLGDVEAA 311


>gi|90077296|dbj|BAE88328.1| unnamed protein product [Macaca fascicularis]
          Length = 452

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
               K   + +E    V TG L+ I+R +A+  + + G  V+  +
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNV 441


>gi|153816808|ref|ZP_01969475.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126512611|gb|EAZ75205.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
          Length = 166

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
           +       +SE ++ ++ FTG   K+ +   +E       +V   ++   DI+  G N G
Sbjct: 75  VVVEPTYPASEQDSLQVCFTG-FNKLDKAALKELAANNNMIVRKEVTVYLDILCYGINAG 133

Query: 696 -SKLEKAQQLGVKIMNEEQFLFLLQ 719
             KLEKA + GV I+N EQF  +++
Sbjct: 134 PKKLEKAMEQGVMILNREQFEKMIE 158


>gi|296417739|ref|XP_002838510.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634449|emb|CAZ82701.1| unnamed protein product [Tuber melanosporum]
          Length = 755

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 19/182 (10%)

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV-PLVGDIIAQAIVEFYQNPR 620
           V    A++LA  Y  + +   E  +        +   I +     D     I+   Q   
Sbjct: 538 VSELEAKALAGEYFRFVDMRPEWEDAATTLIKRYGGAIDIGQGDDDKPVTTILRPGQEDP 597

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFT--GTLQKIQRHKAQEYVTQ 672
             C  +  +         H K V +   +      K +VF+  G L  + R   +E V  
Sbjct: 598 VKC--DRSVDYNHIMDYIHRKIVQTRFSHVDKKALKNVVFSFRGILPTLTRGDMRELVHI 655

Query: 673 LGAVVSAILSRKTDIIIVG-----DNP---GSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            G  V   L+ + D  +VG     DNP     +++  +QLG++ ++E+ F  LL +  + 
Sbjct: 656 YGGFVEENLTSRIDYTVVGSRNPLDNPQVWSREMKIIEQLGIRKIDEDGFAELLLKSQSW 715

Query: 725 LR 726
           LR
Sbjct: 716 LR 717


>gi|85814043|emb|CAH05238.1| DNA polymerase III, epsilon subunit [Micromonospora echinospora]
          Length = 386

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLG 705
            N  +VFTG+++   R + +E     G  V   ++RKT + +    D+   K ++A++ G
Sbjct: 308 ANDVVVFTGSME-PARDQWEEQARSAGLQVGKSVTRKTRLTVAADPDSMSGKAKQARRYG 366

Query: 706 VKIMNEEQFLFLLQQ 720
           + I++   +  LL  
Sbjct: 367 IPIVHPSGYQRLLAD 381


>gi|326489849|dbj|BAJ93998.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
                   +  TG L K  R + +E   +LG   S  L  K   ++V    G K E A +
Sbjct: 53  DGPFAGLVVCVTG-LSKEARSQVKEAAERLGGDYSGSLHPKCTHLVVQSFAGRKFEHALK 111

Query: 704 LG 705
            G
Sbjct: 112 HG 113


>gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 334

 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 15/170 (8%)

Query: 567 ARSLAKYYL----SYQNFAQEINNIIAHNNDDWLSLIRV------PLVGDIIAQAIVEFY 616
           AR LA+ +     +       +  +      +W     V      P  G   A +    Y
Sbjct: 167 ARVLAEAFRPSLHTAARDGVRLPLLECLPLTEWSDSPAVARIGYQPGHGRTGAGSSYGRY 226

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +         P+ GR+E     + +  ++ F+G    + R   ++   + G  
Sbjct: 227 GAGSWRPS-RKRPPCPYPNPGRYEPGKPLK-QGMRVAFSGD-TSVDRELLEDRAFEAGLH 283

Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +S  +SR T +++  D   P SK  +A   G  I++E  F  LL+     
Sbjct: 284 ISTSVSRLTSLLVTNDPHAPTSKTGRATAYGTPIVDEAAFTQLLRDVAAA 333


>gi|255079352|ref|XP_002503256.1| predicted protein [Micromonas sp. RCC299]
 gi|226518522|gb|ACO64514.1| predicted protein [Micromonas sp. RCC299]
          Length = 306

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
             +   +S I+NK +V  GTL  + R  A+  +T  G      ++ KT++I++G +  S 
Sbjct: 181 PQKTAGASRIKNKCVVLVGTLHGMSRADAKTAITAAGGHWRDTITCKTELIVLGLSKPSA 240

Query: 698 LEKAQQ----LGVKIMNEEQFLF 716
           LEKA++      +  +   + L 
Sbjct: 241 LEKAEETAEQKQIDTITGNELLE 263


>gi|114048081|ref|YP_738631.1| NAD-dependent DNA ligase [Shewanella sp. MR-7]
 gi|113889523|gb|ABI43574.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like
           protein [Shewanella sp. MR-7]
          Length = 298

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 15/84 (17%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL-SRKTDIIIVG---------DNPGSK 697
           ++K   FTG  ++++R + ++    LGAV++  + +  TD ++VG          + G K
Sbjct: 213 KDKCFCFTGKFKQLKRVQLEDKAKSLGAVIAKKIPTLSTDYVVVGSLSSRDWLYSSHGLK 272

Query: 698 LEKAQQLG-----VKIMNEEQFLF 716
           ++ A+++      + I++E+Q+L 
Sbjct: 273 IQHAKKMQESGHHISIISEDQWLA 296


>gi|117921128|ref|YP_870320.1| NAD-dependent DNA ligase [Shewanella sp. ANA-3]
 gi|117613460|gb|ABK48914.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like
           protein [Shewanella sp. ANA-3]
          Length = 298

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 15/84 (17%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL-SRKTDIIIVG---------DNPGSK 697
           ++K   FTG  ++++R + ++    LGAV++  + +  TD ++VG          + G K
Sbjct: 213 KDKCFCFTGKFKQLKRVQLEDKAKSLGAVIAKKIPTLSTDYVVVGSLSSRDWLYSSHGLK 272

Query: 698 LEKAQQLG-----VKIMNEEQFLF 716
           ++ A+++      + I++E+Q+L 
Sbjct: 273 IQHAKKMQESGHHISIISEDQWLA 296


>gi|17975108|ref|NP_536630.1| hypothetical protein K139p03 [Vibrio phage K139]
 gi|147671827|ref|YP_001215913.1| NAD-dependent DNA ligase [Vibrio cholerae O395]
 gi|153820796|ref|ZP_01973463.1| NAD-dependent DNA ligase [Vibrio cholerae B33]
 gi|165970237|ref|YP_001650868.1| putative NAD-dependent DNA ligase [Vibrio phage kappa]
 gi|229512069|ref|ZP_04401548.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio
           cholerae B33]
 gi|229519205|ref|ZP_04408648.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio
           cholerae RC9]
 gi|229607240|ref|YP_002877888.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio
           cholerae MJ-1236]
 gi|254849313|ref|ZP_05238663.1| NAD-dependent DNA ligase [Vibrio cholerae MO10]
 gi|262167834|ref|ZP_06035535.1| hypothetical protein VIJ_001005 [Vibrio cholerae RC27]
 gi|4530501|gb|AAD22066.1| Orf2 [Vibrio phage K139]
 gi|126521588|gb|EAZ78811.1| NAD-dependent DNA ligase [Vibrio cholerae B33]
 gi|146314210|gb|ABQ18750.1| NAD-dependent DNA ligase [Vibrio cholerae O395]
 gi|165292214|dbj|BAF98796.1| putative NAD-dependent DNA ligase [Vibrio phage kappa]
 gi|227014825|gb|ACP11034.1| NAD-dependent DNA ligase [Vibrio cholerae O395]
 gi|229343894|gb|EEO08869.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio
           cholerae RC9]
 gi|229352034|gb|EEO16975.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio
           cholerae B33]
 gi|229369895|gb|ACQ60318.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio
           cholerae MJ-1236]
 gi|254845018|gb|EET23432.1| NAD-dependent DNA ligase [Vibrio cholerae MO10]
 gi|262023742|gb|EEY42442.1| hypothetical protein VIJ_001005 [Vibrio cholerae RC27]
          Length = 301

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 14/93 (15%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP----- 694
           +  V + I   ++ FTG      R   +    +LGA V + ++++ D++++G        
Sbjct: 207 DDVVVNSISGLQVCFTGKFFAGNRKSIENKAKELGADVRSDVNKQLDLLVIGSMASRDWI 266

Query: 695 ----GSKLEKA---QQLG--VKIMNEEQFLFLL 718
               G K+E     ++ G   KI+ E+ +L L+
Sbjct: 267 HTSHGRKIESVINNRKSGSSTKILTEQAWLALI 299


>gi|296117576|ref|ZP_06836160.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969307|gb|EFG82548.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 467

 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-- 694
              + + +S +  + +  TG  +   +      +   G  V   +++KT I+++G+    
Sbjct: 371 PNPDADKNSPLYGQHVTLTGDFEPFDKGVLWNGIAHHGGQVGKNVTKKTTILVLGEWATT 430

Query: 695 GSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
            SK ++A +L     G++     +   +L+
Sbjct: 431 TSKEKRADELNDKGQGIEKWPASKLFEVLE 460


>gi|317035115|ref|XP_001401109.2| subunit of DNA polymerase II [Aspergillus niger CBS 513.88]
          Length = 785

 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 621 NICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVV 677
            + AV     +   +  R   ++          +  TG  + +  R++ Q+ VT  GA  
Sbjct: 80  WVEAVRQSWMQGGDTDIRSLEKEYKFPTFAGLSICITG-FEDMSLRNRIQDTVTAHGAEF 138

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
              L++    +I  +  G K + A Q G++I+  + F   L++ 
Sbjct: 139 RKDLTKNVTHLIARNTEGEKYKFATQWGIRIVTVKWFEDSLERG 182


>gi|134081791|emb|CAK42047.1| unnamed protein product [Aspergillus niger]
          Length = 795

 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 621 NICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVV 677
            + AV     +   +  R   ++          +  TG  + +  R++ Q+ VT  GA  
Sbjct: 90  WVEAVRQSWMQGGDTDIRSLEKEYKFPTFAGLSICITG-FEDMSLRNRIQDTVTAHGAEF 148

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
              L++    +I  +  G K + A Q G++I+  + F   L++ 
Sbjct: 149 RKDLTKNVTHLIARNTEGEKYKFATQWGIRIVTVKWFEDSLERG 192


>gi|239944923|ref|ZP_04696860.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
 gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379]
 gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 641

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS-KLEKAQQLG 705
           +  K+  TG      R +        G  +   +SR T +++  +   GS K+ +A   G
Sbjct: 227 QGMKVAITGE-TAHARAELVGRAVAAGLNMMTSVSRHTSVLVTNEPASGSAKVRRALTEG 285

Query: 706 VKIMNEEQFLFLLQQ 720
           V +++E  FL +L  
Sbjct: 286 VPVIDEHTFLRMLAD 300


>gi|227504725|ref|ZP_03934774.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
 gi|227198735|gb|EEI78783.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
          Length = 451

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSK 697
           + +    +  + +  TG  +   +      + + G  V   +++KT I+++G+     SK
Sbjct: 358 DADPEGALFGQNVTLTGEFEPFDKGLLWRSIAERGGQVGKNVTKKTTILVLGEWATKTSK 417

Query: 698 LEKAQQLGVKIMNEEQFL---FLLQQYNTTLRIH 728
            ++A++L ++   E Q      LL++     +  
Sbjct: 418 EKRAEEL-IEKGQEIQLWPASKLLEELQLDAQPP 450


>gi|84501246|ref|ZP_00999451.1| hypothetical protein OB2597_12813 [Oceanicola batsensis HTCC2597]
 gi|84390537|gb|EAQ03025.1| hypothetical protein OB2597_12813 [Oceanicola batsensis HTCC2597]
          Length = 2095

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 562  VGAEIARSLAKYYLSYQNFAQEI------NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            + +  AR +   + S    A+          +     D  L       + + IA+ + + 
Sbjct: 1919 ITSTEARKIHARFHSDPTLAEAPIFAHLRWAVDKALADAVLDEEEAEEIREWIAELVTDG 1978

Query: 616  YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            + +      V  +   ++P+    +      ++ K  V TG +    R    + + + G 
Sbjct: 1979 HADTG----VANIGGVLAPTDPITDACAID-LKGKVFVLTGKMSMGPRSLIGDEIARRGG 2033

Query: 676  VVSAILSRKTDIIIVGDNP---------GSKLEKAQQ 703
             +   ++ +TD ++V +           G+K+E A +
Sbjct: 2034 TLKNTVTDETDYVVVSNTASRHWKTTHYGTKIEAALK 2070


>gi|167623231|ref|YP_001673525.1| hypothetical protein Shal_1298 [Shewanella halifaxensis HAW-EB4]
 gi|167353253|gb|ABZ75866.1| hypothetical protein Shal_1298 [Shewanella halifaxensis HAW-EB4]
          Length = 396

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 14/83 (16%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKL 698
           +N    FTG  +   R   +     LGA+ S  +   T  +++G            G K+
Sbjct: 312 DNIGFCFTGKFKTGSRKTVESKAQSLGAITSKDVLLSTQFLVIGTLASRDWKYLSHGRKI 371

Query: 699 EKAQQLG-----VKIMNEEQFLF 716
           EKA  L      + +++EEQ+L 
Sbjct: 372 EKAMLLKEKGHEIYVISEEQWLA 394



 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG    ++R++ +     +G  V   ++    I+ VGDN G SK++K+ + G  I++
Sbjct: 6   ICFTG-FNAVERNELETLGELVGLSVKKNVTNSLHILCVGDNAGPSKIDKSLEGGSVIID 64

Query: 711 EEQFL 715
           + QF+
Sbjct: 65  KPQFV 69


>gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 330

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLG 705
           +  ++ F+G    ++R   ++   + G  V+  LSR T +++  D  +  SK+ KA+Q G
Sbjct: 251 QGMRVAFSGD-TSVERDLLEDRAVEAGLHVATSLSRLTSLLVTNDPDSGTSKVVKARQFG 309

Query: 706 VKIMNEEQFLFLLQQYNTT 724
             +++E  F  LL      
Sbjct: 310 TPVVDEAAFGQLLADVEPA 328


>gi|328771464|gb|EGF81504.1| hypothetical protein BATDEDRAFT_87455 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 786

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           ++   +  +G L +  R+  ++ V +LG   +   +     +I       K + A +LGV
Sbjct: 5   LQGFVVCVSG-LSEPDRNIVEQRVIELGGKFTGSFTTHVTHLISSSTSTDKYKVALELGV 63

Query: 707 KIMNEEQFLFLLQQYNT 723
            I++  Q++  L+  N 
Sbjct: 64  PIISP-QWVSCLESNND 79



 Score = 41.2 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
             +   +  +G      R + ++ V +LG   + +LS+    +I     G K E A++  
Sbjct: 90  PFKGILVCVSG-FPTEVRQEIEQRVMELGGAFTLVLSKDCTHLICLSPSGRKYEFAKEWK 148

Query: 706 VKIMNEEQFLFLLQQYN 722
           + +++ +      +Q  
Sbjct: 149 LDVVSIDWLNECCKQRG 165


>gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 617

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS-KLEKAQQL 704
           ++  K+  TG      R +        G  V + +SR T +++  D   GS K  +A   
Sbjct: 225 VQGVKIAITGE-TAASRAELVARAVAAGLNVMSSVSRHTGVLVTNDTASGSAKARRAAAE 283

Query: 705 GVKIMNEEQFLFLLQQ 720
           G+ +++E  FL LL  
Sbjct: 284 GITVVDEPTFLKLLAD 299


>gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces coelicolor A3(2)]
          Length = 328

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLG 705
           +  ++ F+G    ++R   ++   + G  V+  LSR T +++  D  +  SK+ KA+Q G
Sbjct: 249 QGMRVAFSGD-TSVERDLLEDRAVEAGLHVATSLSRLTSLLVTNDPDSGTSKVVKARQFG 307

Query: 706 VKIMNEEQFLFLLQQYNTT 724
             +++E  F  LL      
Sbjct: 308 TPVVDEAAFGQLLADVEPA 326


>gi|300933403|ref|ZP_07148659.1| exonuclease, RNase T and DNA polymerase III [Corynebacterium
           resistens DSM 45100]
          Length = 1144

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 566 IARSLAKYYLSYQNFAQEINNI---------IAHNNDDWLSLIRVP-LVGDIIAQAIVEF 615
           +A +LA  YLS     Q   +          I   ++++L  + V   +  ++       
Sbjct: 232 LAAALADKYLSASEIKQLEESAVRDGISHDDIVAIHEEFLRQLSVEAWLDGVVTDEEKHT 291

Query: 616 YQNPRNICAVE-ALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQL 673
            +       V+  L +++  +    E+ V   +    ++ FTG L  + R + ++    +
Sbjct: 292 LRTLAGQLGVDPKLTEQLIATPQTGEQTVGLALAPGDRVTFTGQLD-LPRGEWEQRAKSV 350

Query: 674 GAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  V   +++K+ +++    D+  +K  +A+ LGV I+ E  F  LL
Sbjct: 351 GLDV-GGVTKKSVLVVAANPDSTSAKARRARDLGVPIIGERMFAQLL 396


>gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
 gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
          Length = 623

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLG 705
           +  K+  TG   ++ R +        G  +   +S +T +++  D      KL +A   G
Sbjct: 237 QGMKVAITGD-TQVSREELVARSVAAGLNMMTSVSGQTSVVVTNDPSTASGKLRRAADEG 295

Query: 706 VKIMNEEQFLFLLQ 719
           V +++E  +L LL+
Sbjct: 296 VPLLDEPMYLRLLE 309


>gi|58337906|ref|YP_194491.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
 gi|227902927|ref|ZP_04020732.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
 gi|58255223|gb|AAV43460.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
 gi|227869343|gb|EEJ76764.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
          Length = 318

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 60/180 (33%), Gaps = 35/180 (19%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ Y   +   + I+ +             +    D I   +   +        +E  
Sbjct: 150 RLARAYYPRERHNRLIDCMQRAGIAKVEQHHGLADSLDTI--KVYNDFSEHFTDELLENA 207

Query: 629 LKEV------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++         +  ++    + ++NKK+V +G +  +    A + +  +G      + 
Sbjct: 208 RNKIKNVDLTGDEVDYYQLGYRNPVQNKKIVLSGHI-HMDNEDAGKMIENMGGKNVDKVD 266

Query: 683 RKTDIIIVGD------------------NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             T+ +I+GD                    GSK        +K ++E  FL +L  +  +
Sbjct: 267 PMTNYLIMGDHDFFRKDNEDLNTARDFIKNGSK--------IKRLSESFFLGMLDDWARS 318


>gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 638

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 18/161 (11%)

Query: 569 SLAKYYLSYQNFAQEINN----IIAHNNDDWLSLIRVPLVGDIIAQ---AIVEFYQNPRN 621
           +LA +Y   Q  A +  +    +            ++ L   ++A    A  +F   P  
Sbjct: 149 TLAAHYGIPQQRAHDALDDTRVLAGILRASLREAAQLDLPLPLVACPPRAETQFTPKPPK 208

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
                     ++P     +          K+  TG      R +        G  +   +
Sbjct: 209 APCAYRNPGRLAPGEPLQQ--------GMKVAITGE-TAHARAELVGRAVAAGLNMMTSV 259

Query: 682 SRKTDIIIVGDNPG--SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           SR T +++  +     +K  +A   GV +++E  FL LL  
Sbjct: 260 SRHTSVLVTNEPASDSAKARRALAEGVPVIDEHTFLRLLAD 300


>gi|167623238|ref|YP_001673532.1| hypothetical protein Shal_1305 [Shewanella halifaxensis HAW-EB4]
 gi|167353260|gb|ABZ75873.1| hypothetical protein Shal_1305 [Shewanella halifaxensis HAW-EB4]
          Length = 396

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 14/85 (16%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKL 698
           +N    FTG  +   R   +     LGA+ S  +   T  +++G            G K+
Sbjct: 312 DNIGFCFTGKFKSGSRKTVESKAQSLGAITSKGVLLSTQFVVIGTLASRDWKYLSHGRKI 371

Query: 699 EKAQQLG-----VKIMNEEQFLFLL 718
           E A  L      + +++EEQ+L  +
Sbjct: 372 ETAMSLKEKGHEIYVISEEQWLKFI 396



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG    ++R++ +     +G  V   +++   I+ +G+N G SK++KA++ G  +++
Sbjct: 6   ICFTG-FNAVERNELETQAELVGLSVKKNVTKNLHILCIGENAGPSKVDKAREGGSVVID 64

Query: 711 EEQFL 715
           + QF+
Sbjct: 65  KSQFV 69


>gi|295693537|ref|YP_003602147.1| DNA polymerase iii [Lactobacillus crispatus ST1]
 gi|295031643|emb|CBL51122.1| DNA polymerase III [Lactobacillus crispatus ST1]
          Length = 318

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 62/172 (36%), Gaps = 19/172 (11%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ Y   +   + ++ +         +   +    D I   + + +        +E  
Sbjct: 150 RLARTYYPRERHNRLLDCMQRAGIAQVEAHHGLQDSLDTI--KVYDDFAQHFTDDLLEKA 207

Query: 629 LKEVSP------SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++         +   +    + ++NK +V +G +  +   +A + +  +G  V   + 
Sbjct: 208 QSKIKNIDLTTGELDYVDLGWHNPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDNSVL 266

Query: 683 RKTDIIIVGD-----NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
             T+ +I+GD          L  A+ L      +K  +E  FL +L  +  +
Sbjct: 267 ATTNYLIMGDQDFFRKDNQDLNAARDLIKNGAKIKRFSETFFLSMLDDWARS 318


>gi|262047863|ref|ZP_06020812.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|312976690|ref|ZP_07788439.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
 gi|260571856|gb|EEX28428.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|310896018|gb|EFQ45083.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
          Length = 318

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 62/172 (36%), Gaps = 19/172 (11%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ Y   +   + ++ +         +   +    D I   + + +        +E  
Sbjct: 150 RLARTYYPRERHNRLLDCMQRAGIAQVEAHHGLQDSLDTI--KVYDDFAQHFTDDLLEKA 207

Query: 629 LKEVSP------SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++         +   +    + ++NK +V +G +  +   +A + +  +G  V   + 
Sbjct: 208 QSKIKNIDLTIGELDYVDLGWHNPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDNSVL 266

Query: 683 RKTDIIIVGD-----NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
             T+ +I+GD          L  A+ L      +K  +E  FL +L  +  +
Sbjct: 267 ATTNYLIMGDQDFFRKDNQDLNAARDLIKNGAKIKRFSETFFLSMLDDWARS 318


>gi|256844192|ref|ZP_05549679.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|256614097|gb|EEU19299.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
          Length = 318

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 62/172 (36%), Gaps = 19/172 (11%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ Y   +   + ++ +         +   +    D I   + + +        +E  
Sbjct: 150 RLARTYYPRERHNRLLDCMQRAGIAQVEAHHGLQDSLDTI--KVYDDFAQHFTDDLLEKA 207

Query: 629 LKEVSP------SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++         +   +    + ++NK +V +G +  +   +A + +  +G  V   + 
Sbjct: 208 QSKIKNIDLTTGELDYVDLGWHNPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDNSVL 266

Query: 683 RKTDIIIVGD-----NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
             T+ +I+GD          L  A+ L      +K  +E  FL +L  +  +
Sbjct: 267 ATTNYLIMGDQDFFRKDNQDLNAARDLIKNGAKIKRFSETFFLSMLDDWARS 318


>gi|217974210|ref|YP_002358961.1| BRCT domain-containing protein [Shewanella baltica OS223]
 gi|217499345|gb|ACK47538.1| BRCT domain protein [Shewanella baltica OS223]
          Length = 298

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 15/84 (17%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGA-VVSAILSRKTDIIIVG---------DNPGSK 697
             K   FTG  +   R   +     LGA ++    +  T  ++VG          + G+K
Sbjct: 213 TGKGFCFTGKFKTDNRTNIEAKAKSLGANIIKKTPTLATHYVVVGSLSSRDWAYSSHGTK 272

Query: 698 LEKAQQL-----GVKIMNEEQFLF 716
           ++ A+Q+      + I++E+Q+L 
Sbjct: 273 IQHAKQMQAKGYDIAIISEDQWLA 296


>gi|319935781|ref|ZP_08010210.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1]
 gi|319809216|gb|EFW05665.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1]
          Length = 301

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 18/118 (15%)

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            +       + A    ++P +    +   + + ++ + FTG L  + R   +E   Q+ A
Sbjct: 185 MKENYYRNIISAE---IAPQLRELSQREDAFLYHQFVCFTGKLS-MPRELLEEKTKQVSA 240

Query: 676 VVSAILSRKTDIIIVGDNP---------GSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
           + +  +S +T+ +++G              K++KA QL      ++I++E ++L LL+
Sbjct: 241 LATQQVSTQTNYLVIGGKGYHKVRFGNENKKVKKAIQLMKQGQDLRIVHENEYLKLLE 298


>gi|300812825|ref|ZP_07093220.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496161|gb|EFK31288.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 54

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 669 YVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +   G  V+  +S  TD ++ G+  +   K +KA + G  ++  E  + LLQ+
Sbjct: 1   MIQSHGGKVTGSVSGVTDYLLKGELDHVTGKCKKAVEKGTAVIGYEDLMLLLQK 54


>gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22]
 gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces scabiei 87.22]
          Length = 613

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNPGS-KLEKAQQL 704
           ++  K+  TG   ++ R +        G  +   +S +T +++      GS KL++A   
Sbjct: 223 VQGMKVAITGD-TRVSREELVARSVAAGLNMMTSVSGQTSVVVTNAPGTGSAKLKRAADE 281

Query: 705 GVKIMNEEQFLFLLQ 719
           GV +++E  +L LL+
Sbjct: 282 GVPLVDEPTYLRLLK 296


>gi|119182012|ref|XP_001242164.1| hypothetical protein CIMG_06060 [Coccidioides immitis RS]
          Length = 1406

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKL 698
           + +  +NK +V +GT    ++   +  +   G   SA ++     ++      +N G+K 
Sbjct: 1   MPAVFKNKTVVLSGTFPGYKQADLKNLIETNGGTFSAKVTDDCTHLVCTQKEFENNGTKN 60

Query: 699 EKAQQL-GVKIMNEEQFLF 716
           ++A  + G+ I++      
Sbjct: 61  KQASSITGISIVSSAWLFE 79


>gi|293380779|ref|ZP_06626825.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Lactobacillus crispatus 214-1]
 gi|290922665|gb|EFD99621.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Lactobacillus crispatus 214-1]
          Length = 318

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 62/172 (36%), Gaps = 19/172 (11%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ Y   +   + ++ +         +   +    D I   + + +        +E  
Sbjct: 150 RLARTYYPRERHNRLLDCMQRAGIAQVEAHHGLQDSLDTI--KVYDDFAQHFTDDLLEKA 207

Query: 629 LKEVSP------SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++         +   +    + ++NK +V +G +  +   +A + +  +G  V   + 
Sbjct: 208 QSKIKNIDLTIGELDYVDLGWHNPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDDSVL 266

Query: 683 RKTDIIIVGD-----NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
             T+ +I+GD          L  A+ L      +K  +E  FL +L  +  +
Sbjct: 267 ATTNYLIMGDHDFFRKDNQDLNAARDLIKNGAKIKRFSETFFLSMLDDWARS 318


>gi|303318881|ref|XP_003069440.1| Poly(ADP-ribose) polymerase domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240109126|gb|EER27295.1| Poly(ADP-ribose) polymerase domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 707

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKL 698
           + +  +NK +V +GT    ++   +  +   G   SA ++     ++      +N G+K 
Sbjct: 1   MPAVFKNKTVVLSGTFPGYKQADLKNLIETNGGTFSAKVTDDCTHLVCTQKEFENNGTKN 60

Query: 699 EKAQQL-GVKIMNEEQFLF 716
           ++A  + G+ I++      
Sbjct: 61  KQASSVTGISIVSSAWLFE 79


>gi|326479986|gb|EGE03996.1| WGR domain-containing protein [Trichophyton equinum CBS 127.97]
          Length = 734

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII---VGDNPGSKLE 699
           +S+ +  + +V +G+ +       +  V QLG   SA ++     +I        G+K +
Sbjct: 1   MSNPLAGQVVVVSGSFRSYNHETIKSIVEQLGGTFSATVTDACTHLITSKAAHPAGTKNQ 60

Query: 700 KAQQLG--VKIMNEEQF 714
           +A  LG  ++I++ +  
Sbjct: 61  QAIALGNDIQIVSLDWL 77


>gi|207110629|ref|ZP_03244791.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 77

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKI 661
           G  +A+++V FY +  N   + +L   ++P    +   ++  SS   NK +V TGTL K 
Sbjct: 1   GVEMARSLVNFYAS--NQEFIRSLFDLLNPKNSDMTEEKQKSSSVFNNKTIVLTGTLSKP 58

Query: 662 QRHKAQEYVTQLGAVVS 678
           ++  AQ     LGA +S
Sbjct: 59  RQEYAQTL-ENLGAKIS 74


>gi|311741567|ref|ZP_07715391.1| probable DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303737|gb|EFQ79816.1| probable DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 442

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--N 693
               + +    +  + +  TG  +   +    + + + G  V+  +++K+ ++IVG+   
Sbjct: 345 EPNPDADPEGALYGQHVTLTGDFEPYDKGVLWQGIAERGGQVAKNVTKKSTLLIVGEWAK 404

Query: 694 PGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719
             SK ++A++L      + I   ++    LQ
Sbjct: 405 KTSKEKRAEELQAKGQEIDIWPADKLFAELQ 435


>gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 412

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706
              +V TG + +  R + +  +   G      +++K  +++  D  +   K +KA+  G+
Sbjct: 340 GAMVVLTGDMTRP-RSEIEAQLASAGFTPHRAITKKVALLVAADPDSLSGKAKKARDYGI 398

Query: 707 KIMNEEQFLFLL 718
            ++ EE     L
Sbjct: 399 PVVGEEYLWNTL 410


>gi|255325307|ref|ZP_05366413.1| DNA polymerase III epsilon subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255297872|gb|EET77183.1| DNA polymerase III epsilon subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 443

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--N 693
               + +    +  + +  TG  +   +    + + + G  V+  +++K+ ++IVG+   
Sbjct: 346 EPNPDADPEGALYGQHVTLTGDFEPYDKGVLWQGIAERGGQVAKNVTKKSTLLIVGEWAK 405

Query: 694 PGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719
             SK ++A++L      + I   ++    LQ
Sbjct: 406 KTSKEKRAEELQAKGQEIDIWPADKLFAELQ 436


>gi|126433476|ref|YP_001069167.1| AAA ATPase [Mycobacterium sp. JLS]
 gi|126233276|gb|ABN96676.1| AAA ATPase [Mycobacterium sp. JLS]
          Length = 782

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 649 NKKLVFTGTLQKIQ-----RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEK 700
             ++ FTGT          R + +      G      +++    ++V    G+   K  K
Sbjct: 698 GARICFTGTALDPSGRVVEREEIERMAEAAGLKPVRSVTKTRCEVLVTAEAGTQSGKARK 757

Query: 701 AQQLGVKIMNEEQFLFLL 718
           AQ+ G  +   E+F   L
Sbjct: 758 AQEYGKPVFTAEEFFAWL 775


>gi|108797836|ref|YP_638033.1| ATPas [Mycobacterium sp. MCS]
 gi|119866930|ref|YP_936882.1| AAA ATPase [Mycobacterium sp. KMS]
 gi|108768255|gb|ABG06977.1| ATPase [Mycobacterium sp. MCS]
 gi|119693019|gb|ABL90092.1| AAA ATPase [Mycobacterium sp. KMS]
          Length = 782

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 649 NKKLVFTGTLQKIQ-----RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEK 700
             ++ FTGT          R + +      G      +++    ++V    G+   K  K
Sbjct: 698 GARICFTGTALDPSGRVVEREEIERMAEAAGLKPVRSVTKTRCEVLVTAEAGTQSGKARK 757

Query: 701 AQQLGVKIMNEEQFLFLL 718
           AQ+ G  +   E+F   L
Sbjct: 758 AQEYGKPVFTAEEFFAWL 775


>gi|49484243|ref|YP_041467.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242372|emb|CAG41084.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 310

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 15/109 (13%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           + +  ++S       ++V   +++K +VFTG     ++        + GA + + ++ KT
Sbjct: 203 QKIHMKISEINKIEVESVIPILKDKNVVFTGNFDTEKQD-LMILTRKKGAYIRSDVTAKT 261

Query: 686 DIIIVG-------DNPG--SKLEKAQQL---GVKI--MNEEQFLFLLQQ 720
           DI++ G       D  G  SK  KA++    G KI  +NEE  + L+++
Sbjct: 262 DILVEGVQDDKYKDVNGLVSKQRKAREYVGNGAKIQFLNEEDLINLIKE 310


>gi|15927574|ref|NP_375107.1| ATP-dependent helicase [Staphylococcus aureus subsp. aureus N315]
 gi|29028621|ref|NP_803310.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12]
 gi|30043986|ref|NP_835521.1| probable ATP-dependent helicase [Staphylococcus phage phiN315]
 gi|87161004|ref|YP_494621.1| putative exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195288|ref|YP_500092.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|118725058|ref|YP_908794.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3]
 gi|151222134|ref|YP_001332956.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161510224|ref|YP_001575883.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253315032|ref|ZP_04838245.1| putative exonuclease [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253729784|ref|ZP_04863949.1| DNA polymerase III epsilon subunit family exonuclease
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|258413674|ref|ZP_05681948.1| phage exonuclease [Staphylococcus aureus A9763]
 gi|258425109|ref|ZP_05687979.1| phage exonuclease [Staphylococcus aureus A9635]
 gi|258434316|ref|ZP_05688717.1| exonuclease family protein [Staphylococcus aureus A9299]
 gi|258447837|ref|ZP_05695972.1| phage exonuclease [Staphylococcus aureus A6224]
 gi|258452362|ref|ZP_05700372.1| ATP-dependent helicase [Staphylococcus aureus A5948]
 gi|282917349|ref|ZP_06325104.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282928799|ref|ZP_06336392.1| exodeoxyribonuclease [Staphylococcus aureus A10102]
 gi|283771164|ref|ZP_06344055.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|294849552|ref|ZP_06790294.1| exodeoxyribonuclease [Staphylococcus aureus A9754]
 gi|295428583|ref|ZP_06821210.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297589943|ref|ZP_06948583.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|13701793|dbj|BAB43086.1| probable ATP-dependent helicase [Staphylococcus aureus subsp.
           aureus N315]
 gi|18920545|gb|AAL82285.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12]
 gi|87126978|gb|ABD21492.1| putative exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202846|gb|ABD30656.1| exonuclease family [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|104641823|gb|ABF73165.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3]
 gi|150374934|dbj|BAF68194.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160369033|gb|ABX30004.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726519|gb|EES95248.1| DNA polymerase III epsilon subunit family exonuclease
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257839627|gb|EEV64097.1| phage exonuclease [Staphylococcus aureus A9763]
 gi|257844692|gb|EEV68736.1| phage exonuclease [Staphylococcus aureus A9635]
 gi|257849264|gb|EEV73245.1| exonuclease family protein [Staphylococcus aureus A9299]
 gi|257858934|gb|EEV81802.1| phage exonuclease [Staphylococcus aureus A6224]
 gi|257859949|gb|EEV82787.1| ATP-dependent helicase [Staphylococcus aureus A5948]
 gi|269941473|emb|CBI49870.1| putative phage exonuclease [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282318976|gb|EFB49331.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282589534|gb|EFB94622.1| exodeoxyribonuclease [Staphylococcus aureus A10102]
 gi|283459758|gb|EFC06849.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|285817684|gb|ADC38171.1| Pol III-like ATP dependent helicase, phage associated
           [Staphylococcus phage phiN315]
 gi|294823689|gb|EFG40116.1| exodeoxyribonuclease [Staphylococcus aureus A9754]
 gi|295127565|gb|EFG57204.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577071|gb|EFH95785.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|312830370|emb|CBX35212.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315196784|gb|EFU27129.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320143661|gb|EFW35439.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329724440|gb|EGG60950.1| exonuclease [Staphylococcus aureus subsp. aureus 21189]
          Length = 310

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 15/109 (13%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           + +  ++S       ++V   +++K +VFTG     ++        + GA + + ++ KT
Sbjct: 203 QKIHMKISEINKIEVESVIPILKDKNVVFTGNFDTEKQD-LMILTRKKGAYIRSDVTAKT 261

Query: 686 DIIIVG-------DNPG--SKLEKAQQL---GVKI--MNEEQFLFLLQQ 720
           DI++ G       D  G  SK  KA++    G KI  +NEE  + L+++
Sbjct: 262 DILVEGVQDDKYKDVNGLVSKQRKAREYVGNGAKIQFLNEEDLINLIKE 310


>gi|308179139|ref|YP_003918545.1| exonuclease [Arthrobacter arilaitensis Re117]
 gi|307746602|emb|CBT77574.1| putative exonuclease [Arthrobacter arilaitensis Re117]
          Length = 467

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 17/88 (19%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD-IIIVGDNP-------- 694
             E+  + L  TG  + + R +A +     GA V    +RKT  ++I  +NP        
Sbjct: 212 EHELFGQGLTITGGFELLGRREAFQLAASFGASVQLSTTRKTTILVICDENPHAPGFDLR 271

Query: 695 --GSKLEKAQQL------GVKIMNEEQF 714
              +K  KA +        ++IM+E +F
Sbjct: 272 HGTTKARKAHEYITERAQQIRIMSETEF 299


>gi|227877650|ref|ZP_03995697.1| DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850746|ref|ZP_05556169.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|227862746|gb|EEJ70218.1| DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256712459|gb|EEU27457.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 318

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 62/172 (36%), Gaps = 19/172 (11%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ Y   +   + ++ +         +   +    D I   + + +        +E  
Sbjct: 150 RLARTYYPRERHNRLLDCMQRAGIAQVEAHHGLQDSLDTI--KVYDDFAQRFTDDLLEKA 207

Query: 629 LKEVSP------SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++         +   +    + ++NK +V +G +  +   +A + +  +G  V   + 
Sbjct: 208 QSKIKNIDLTTGELDYVDLGWHNPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDNSVL 266

Query: 683 RKTDIIIVGD-----NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
             T+ +I+GD          L  A+ L      +K  +E  FL +L  +  +
Sbjct: 267 ATTNYLIMGDQDFFRKDNQDLNAARDLIKNGAKIKRFSETFFLSMLDDWARS 318


>gi|262204572|ref|YP_003275780.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
 gi|262087919|gb|ACY23887.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
          Length = 590

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS----KLEKAQ 702
           I+  K+  TG    + R +    ++  G  V   +S KT I+I   NPGS    KL++A+
Sbjct: 215 IQGTKVAITGP-TTVPRTELARRLSDAGLDVMNSVSGKTGIVIA--NPGSPDSRKLQRAR 271

Query: 703 QLGVKIMNEEQFLFL 717
             G  +++E   L L
Sbjct: 272 LDGTPVLDEGTMLRL 286


>gi|327300553|ref|XP_003234969.1| polymerase [Trichophyton rubrum CBS 118892]
 gi|326462321|gb|EGD87774.1| polymerase [Trichophyton rubrum CBS 118892]
          Length = 726

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII---VGDNPGSKLE 699
           +S  +  + +V +G+ +       +  V QLG   SA ++     ++        G+K +
Sbjct: 1   MSKPLAGQVVVVSGSFRAYNHDTIKYIVEQLGGTFSATVTDACTHLVTSKAAHPAGTKNQ 60

Query: 700 KAQQLG--VKIMNEEQF 714
           +A  LG  +KI++ +  
Sbjct: 61  QAIALGNDIKIVSLDWL 77


>gi|302891805|ref|XP_003044784.1| hypothetical protein NECHADRAFT_43760 [Nectria haematococca mpVI
           77-13-4]
 gi|256725709|gb|EEU39071.1| hypothetical protein NECHADRAFT_43760 [Nectria haematococca mpVI
           77-13-4]
          Length = 853

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 12/115 (10%)

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIENKK------ 651
           P +  + A  I    +  +N   ++        ++ P   R         E +       
Sbjct: 89  PDIKAMDAAWIEALSELWKNDDEIDYRKLESEYQLKPLEKRGVDPSIQPQEGETGRDSLM 148

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  TG  ++  R +    +T  G   +  L++K   +IV    G K E A+Q G+
Sbjct: 149 ICLTGFGEQ--RDEIALKITSNGGRYTGDLTKKCSHLIVNKPEGRKYEAARQWGI 201


>gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
 gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
          Length = 328

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706
             K+V TG++++ +R   +  +  +G  V   ++++  +++  D  +  +K  KA+  G+
Sbjct: 252 GDKIVLTGSMRQ-RRSDWETELESMGLEVRPSVTKQVRLVVAADPYSESTKARKARDYGI 310

Query: 707 KIMNEEQF 714
            I+ E   
Sbjct: 311 PIVAEHWL 318


>gi|300900188|ref|ZP_07118377.1| hypothetical protein HMPREF9552_04248 [Escherichia coli MS 198-1]
 gi|300356303|gb|EFJ72173.1| hypothetical protein HMPREF9552_04248 [Escherichia coli MS 198-1]
          Length = 130

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 16/143 (11%)

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             K       ++ P D+F++   + T   +       G    + +   I + +++ L   
Sbjct: 1   MLKQLVEKCYVQKPLDMFSMTAGKLTGLDQS------GPKLASIICRGIEQAKDVQLGEL 54

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+ GI  V  E A  LAK + + +          A       SL+   L+ + +A    
Sbjct: 55  LFACGIYGVEEEEAWLLAKRFSNLE----------ALYGASIDSLMSYNLLNEAVAVNTY 104

Query: 614 EFYQNPRNICAVEALLKEVSPSI 636
            F+++P N+ A+  L  E    +
Sbjct: 105 NFFRHPLNVSALNELQTEGGLKV 127


>gi|295133972|ref|YP_003584648.1| NAD-dependent DNA ligase [Zunongwangia profunda SM-A87]
 gi|294981987|gb|ADF52452.1| NAD-dependent DNA ligase [Zunongwangia profunda SM-A87]
          Length = 148

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 1/105 (0%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
             +        + +  + +  E KK+VF G L        +  +    A+V   ++  T+
Sbjct: 30  EDISHTMEKDTKADSEIENGFEGKKVVFDGELDAYIEENIKNELRNKHAIVEDKMAEDTN 89

Query: 687 IIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
            +I G NP    +E+A+ LGV I NE  +   + +  T L     
Sbjct: 90  FLITGKNPDWLVVEEAKDLGVTIFNEMDWQNTVHKIETNLSAETK 134


>gi|319761963|ref|YP_004125900.1| hypothetical protein Alide_1251 [Alicycliphilus denitrificans BC]
 gi|317116524|gb|ADU99012.1| hypothetical protein Alide_1251 [Alicycliphilus denitrificans BC]
          Length = 236

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK-LEKAQQLGV 706
           E K  VF    +  +  + +      G  +   +S   D ++   + G K L +A  LG+
Sbjct: 165 EWKTAVFFAGFRGGKLDELEGLAAAAGWQIRWTISPTVDYVVRNGSAGKKQLAEADNLGI 224

Query: 707 KIMNEEQFLFLL 718
            +++E+ F  LL
Sbjct: 225 DVIDEDTFRALL 236


>gi|326468534|gb|EGD92543.1| polymerase [Trichophyton tonsurans CBS 112818]
          Length = 723

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII---VGDNPGSKLE 699
           +S+ +  + +V +G+ +       +  V QLG   SA ++     +I        G+K +
Sbjct: 1   MSNPLAGQVVVVSGSFRSYNHETIKSIVEQLGGTFSATVTDACTHLITSKAAHPAGTKNQ 60

Query: 700 KAQQLG--VKIMN 710
           +A  LG  ++I++
Sbjct: 61  QAIALGNDIQIVS 73


>gi|315038988|ref|YP_004032556.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
 gi|325957414|ref|YP_004292826.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
 gi|312277121|gb|ADQ59761.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
 gi|325333979|gb|ADZ07887.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
 gi|327184122|gb|AEA32569.1| DNA polymerase III [Lactobacillus amylovorus GRL 1118]
          Length = 318

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 19/172 (11%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ Y   +   + I+ +             +    D I   +   +        +EA 
Sbjct: 150 RLARAYYPRERHNRLIDCMQRAGIAQVEEHHGLADSLDTI--KVYNDFSAHFTDDLLEAT 207

Query: 629 LKEV------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++         +   +    + ++NK +V +G +  +    A + +  +G  V   ++
Sbjct: 208 RNKIKNVDLTGDDVDYIDLGFRNPVQNKNIVLSGHI-HMDEQDADKMIGNMGGKVEDKVN 266

Query: 683 RKTDIIIVGD-NPGSK----LEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
             T+ +I+GD +   K    L  A+ L      +K ++E  FL +L  +  +
Sbjct: 267 PMTNYLIMGDHDFFRKDNEDLNTARDLIKDGAKIKRLSESFFLGMLDDWARS 318


>gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 328

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706
             K+V TG++++ +R   +  +  +G  V   ++++  +++  D  +  +K  KA+  G+
Sbjct: 252 GDKIVLTGSMRQ-RRSDWETELESMGLEVRPSVTKQVRLVVAADPYSESTKARKARDYGI 310

Query: 707 KIMNEEQF 714
            I+ E   
Sbjct: 311 PIVAEHWL 318


>gi|323358024|ref|YP_004224420.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
 gi|323274395|dbj|BAJ74540.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
          Length = 405

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 28/175 (16%)

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L RF   L   ++ +   R L + Y  +               D+W+ + ++  + +I 
Sbjct: 248 DLIRFAAEL---NLSSTAVRRLHRAY--FDGLVSAAWADDHLTADEWVDIRKIGGLLEID 302

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQRHKAQ 667
           AQ I                     P            +     +V TG     +R +A 
Sbjct: 303 AQTIA---------------GAASKPDAAAPTLTTGFRLSPGDTVVITG---DTRRDRAA 344

Query: 668 --EYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
               +T+ G +    + +K  +++  D  +   K  +A+  G+ I+ EE    LL
Sbjct: 345 WFAILTERGLIPKDSMVKKAKVLVAADPDSMSGKARQARAWGIPIVTEEGLERLL 399


>gi|227894158|ref|ZP_04011963.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
 gi|227864030|gb|EEJ71451.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
          Length = 318

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ Y   +   + I+ +             +    D I   +   +        +EA 
Sbjct: 150 RLARAYYPRERHNRLIDCMQRAGIAQVEQHHGLADSLDTI--KVYNDFNKHFTEELLEAA 207

Query: 629 LKEV------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
              +         +  ++    + ++NK +V +G +  + +++A + +  +G  V   + 
Sbjct: 208 RSRIKNFDLTGDELDYYQLGFRNPVQNKDIVLSGHI-HMDQNEANKMIGNMGGTVDDGVL 266

Query: 683 RKTDIIIVGD-NPGSK----LEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
             T+ +I+GD +   K    L  A+ L      +K ++E  FL +L  +  +
Sbjct: 267 ATTNYLIMGDHDFFRKDNEDLNTARDLIKNGAKIKRLSESFFLGMLDDWARS 318


>gi|227533071|ref|ZP_03963120.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227189295|gb|EEI69362.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 78

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 23/99 (23%)

Query: 397 VGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
            GD++LV  AG+ IP++ D++    ER                         P   +  +
Sbjct: 1   PGDQILVSLAGQGIPRIDDVVWRGAERTK---------------------PTPPENRFNS 39

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                    C  Q + RL    ++    ++G+G+     
Sbjct: 40  LTCYFASDVCQEQFISRLVWLGAKQVLGLDGIGEAGWRA 78


>gi|182682930|ref|YP_001837054.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage EPS7]
 gi|182630642|gb|ACB97574.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage EPS7]
          Length = 129

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 9/119 (7%)

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEI----ENKKLVFTGTLQKI 661
              +    +  +P+    +E   K        + +  ++ ++        +  TG+LQ  
Sbjct: 6   KAGENYKTWLNSPQGKDVIELPWKFSTGIRGAKADIIITDDLVAQPNGITVCITGSLQDF 65

Query: 662 -QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQFLF 716
             R  A  Y+  LG  V   +++    +I  D      S  +KA+  G++I++ ++ L 
Sbjct: 66  ANRTDATNYLESLGYTVKKSVTKDVKYLICEDESKRSSSSYKKAETNGIEILSIKELLE 124


>gi|115479373|ref|NP_001063280.1| Os09g0440200 [Oryza sativa Japonica Group]
 gi|51091406|dbj|BAD36149.1| unknown protein [Oryza sativa Japonica Group]
 gi|113631513|dbj|BAF25194.1| Os09g0440200 [Oryza sativa Japonica Group]
          Length = 548

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
                   +  TG L K  R + +E   ++G   S  L  K   ++V    G K E A +
Sbjct: 51  DGPFAGLVICVTG-LSKEARTQVKEATERMGGEYSGSLHPKCTHLVVQSFAGRKFEHAVK 109

Query: 704 LGVK 707
            G K
Sbjct: 110 HGAK 113


>gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 317

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706
             K+V TG++++ +R   +  +  +G  V   ++++  +++  D  +  +K  KA+  G+
Sbjct: 241 GDKIVLTGSMRQ-RRSDWETELESMGLEVRPSVTKQVRLVVAADPYSESTKARKARDYGI 299

Query: 707 KIMNEEQF 714
            I+ E   
Sbjct: 300 PIVAEHWL 307


>gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 331

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 9/160 (5%)

Query: 567 ARSLAKYYLSYQNFAQ----EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           AR LA+ +      A      +  +      +W      P++G                 
Sbjct: 166 ARVLAEAFRPSLRAAALGNVRLPLLECRPLTEWSDSPARPVIGRQYGGQYGSRPAAGNWR 225

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            +         P+ GR E      ++  ++ F+G     +R   ++  T+ G  V+  +S
Sbjct: 226 PS-RKRPPCPYPNPGRWEDGRP-LVQGMRVAFSGD-TSTERELLEDRATEAGLHVAGSIS 282

Query: 683 RKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R T +++  D  +  SK  +A+Q G  +++E  F  LL+ 
Sbjct: 283 RLTSLLVTNDPDSGTSKTVRARQYGTPVVDEAAFGQLLRD 322


>gi|258571954|ref|XP_002544780.1| hypothetical protein UREG_04297 [Uncinocarpus reesii 1704]
 gi|237905050|gb|EEP79451.1| hypothetical protein UREG_04297 [Uncinocarpus reesii 1704]
          Length = 661

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKL 698
           +++  +NK +V +GT         +  V   G   SA ++     +I      +N G+K 
Sbjct: 1   MAAIFKNKTIVLSGTFSGHTHASLKSLVETHGGTFSAKVTDDCTHLISSAKEFENNGTKN 60

Query: 699 EKAQQLGVKIMNEEQFLF 716
           ++A    V +++ +  L 
Sbjct: 61  KQAASNNVDVVSVDWLLD 78


>gi|320168366|gb|EFW45265.1| DNA ligase [Capsaspora owczarzaki ATCC 30864]
          Length = 881

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
           +        +  +       TG +  + R    + + + G  V+  ++     +I     
Sbjct: 153 NEDEDGNPSTRALAGMTFCLTGAMS-VTRKVMTKLIQRHGGRVANTVTGAVTHLISAVEG 211

Query: 695 GSKLEKA-QQLGVKIMNEEQFLFLLQQ 720
            SK ++A  +  V I +EE    L+ +
Sbjct: 212 TSKHDRALLRDDVAIESEEFIHDLISK 238


>gi|271965325|ref|YP_003339521.1| DNA polymerase III subunit epsilon-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270508500|gb|ACZ86778.1| DNA polymerase III epsilon subunit and related 3'-5'
           exonuclease-like protein [Streptosporangium roseum DSM
           43021]
          Length = 407

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIM 709
           +VFTG +    R   +    Q G +    ++RK  +++  D  +  +K  KA+  G+ I+
Sbjct: 339 VVFTGEMDGP-RDDWEWRALQAGYIPHGYITRKVRLLVAADPDSLSAKARKARDYGIPIV 397

Query: 710 NEEQFLFLL 718
             + F  +L
Sbjct: 398 TPDAFARML 406


>gi|227548773|ref|ZP_03978822.1| AAA ATPase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079185|gb|EEI17148.1| AAA ATPase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 946

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGT---LQKIQRHK-AQEYVTQLGAVVSAILSR-KTDII 688
           P +   +++ +   E  ++ FTG    L      +   E     G V    +S+ +TD++
Sbjct: 675 PVVVESDQSYALLYEGARVAFTGRKNLLGAPADDERLAEICASRGLVYKKSVSKTRTDVL 734

Query: 689 IVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
           + GD  +   K + A++ G  I+ +E+F  
Sbjct: 735 VAGDPASMSRKAQNAREFGTPIITQEEFER 764


>gi|224105065|ref|XP_002313672.1| predicted protein [Populus trichocarpa]
 gi|222850080|gb|EEE87627.1| predicted protein [Populus trichocarpa]
          Length = 809

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGS-KLEK 700
            +    +  +G L +      +  + + G  VS+   +    ++V     +  GS KL  
Sbjct: 182 PLAGIVVSLSGRLSR-THQYWKREIEKHGGKVSSSF-KGITCLVVSPAERERGGSTKLAD 239

Query: 701 AQQLGVKIMNEEQFLFLLQQ 720
           A + G+ ++ E+  L  +++
Sbjct: 240 ALEAGIPVVREDWLLDSIEK 259


>gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1]
 gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1]
          Length = 649

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQL 704
           ++  KLV +G+   + R      +T  G  V   +SR+T +++  D  +  +K+ +A   
Sbjct: 276 VQGMKLVISGS-TDVPRLSLAARLTAAGLDVMNSVSRQTGVVVCNDPHSSSAKVRRAVAD 334

Query: 705 GVKIMNEEQFLFLL 718
           G+ ++ E Q   +L
Sbjct: 335 GIPVLTERQLGEML 348


>gi|331700439|ref|YP_004397398.1| hypothetical protein Lbuc_0044 [Lactobacillus buchneri NRRL
           B-30929]
 gi|329127782|gb|AEB72335.1| hypothetical protein Lbuc_0044 [Lactobacillus buchneri NRRL
           B-30929]
          Length = 92

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 11/78 (14%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGSKL 698
           + + ++VFTG L  + R +A    +  GA   A ++++TD +IVG             KL
Sbjct: 4   LTDMEIVFTGKLASMPRKQAFAVASAFGAFPKAQINKQTDYLIVGAIHKTINEPLTTRKL 63

Query: 699 EKAQQLGVKIMNEEQFLF 716
           +      +K + E+ F+ 
Sbjct: 64  DIP---NIKHITEKDFID 78


>gi|291531224|emb|CBK96809.1| hypothetical protein EUS_17190 [Eubacterium siraeum 70/3]
          Length = 598

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---DNPGSKLEKAQQ 703
           I++K  V TG L   +  +   ++ + G  V       TD ++     D+   KL KA++
Sbjct: 518 IKDKVFVHTG-LSLQEESEFDSFIFENGGTVRKSTVLNTDYLVYNADYDHETVKLRKARE 576

Query: 704 L-----GVKIMNEEQFLFLLQ 719
           L     G++I+  E++  L+ 
Sbjct: 577 LKEKGSGIEILTTEEWKKLID 597


>gi|261343355|ref|ZP_05971000.1| conserved hypothetical protein [Providencia rustigianii DSM 4541]
 gi|282568493|gb|EFB74028.1| conserved hypothetical protein [Providencia rustigianii DSM 4541]
          Length = 295

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 15/85 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NPGSK 697
           I  K +  TG     +R      + + G  +S  ++  +D +++G          + G K
Sbjct: 205 ISGKAICLTGNFLSGKRSVIASMIEEAGGHISDKVTLTSDYLVIGALSSRDWKYSSHGRK 264

Query: 698 LEKA---QQLG---VKIMNEEQFLF 716
           +EKA   +  G   +KI  E+  + 
Sbjct: 265 IEKAIEDRDQGKSIIKITTEDILMR 289


>gi|328850331|gb|EGF99497.1| hypothetical protein MELLADRAFT_79481 [Melampsora larici-populina
           98AG31]
          Length = 234

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 13/88 (14%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
               +   + +     +FTG L+ + R +AQ      G       ++K + +I       
Sbjct: 28  KEIPEGQPNCLAGLTFLFTGELESLSREEAQTLCKLYGGSWFRCSAKKLE-VIA------ 80

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
                 +  +  + E++ L L+  ++ +
Sbjct: 81  ------KHKITTLTEDKILELIGTHSAS 102


>gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
 gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
          Length = 283

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 14/94 (14%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAI--LSRKTDIIIVGD----N 693
              ++ +      FTG+ ++   R +  + + + G  V      +  TD +I+G     N
Sbjct: 189 DVTNNSLSGAHFAFTGSFKEFPDRKEITKLIIKNGGYVPNGHRCTSVTDFLILGKPTARN 248

Query: 694 PGSKLEK-------AQQLGVKIMNEEQFLFLLQQ 720
              K  K       A +    I+   +F+ +L +
Sbjct: 249 LTDKANKRRQSMINALKYNTNIITANEFISMLGE 282


>gi|239928032|ref|ZP_04684985.1| DNA polymerase III [Streptomyces ghanaensis ATCC 14672]
 gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 631

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLG 705
           +  K+  TG      R +        G  +   +SR T +++  +     +K  +A   G
Sbjct: 227 QGMKVAITGE-TAHARAELVGRAVAAGLNMMTSVSRHTSVLVTNEPAADSAKARRALAEG 285

Query: 706 VKIMNEEQFLFLLQQ 720
           V +++E  FL LL  
Sbjct: 286 VPVVDERTFLRLLAD 300


>gi|47224333|emb|CAG09179.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 841

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 13/100 (13%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTD 686
           P            +   KLV  G L K  +   +  V +LG  ++         LS K +
Sbjct: 121 PVGLPEGAPPDKPLTGMKLVAVGKLSK-NKDDLKAAVEELGGKITGAANKASLCLSSKKE 179

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +    +    K+E+ ++ GV++++E+ FL  ++     L+
Sbjct: 180 L----EKMTKKMEEVKEAGVRVVSED-FLTDIKSSGKALQ 214


>gi|207111514|ref|ZP_03245676.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 46

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
           V R+G+VIPK++  + + R         P  CPIC   ++ + 
Sbjct: 1   VIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCEE 43


>gi|311747943|ref|ZP_07721728.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
 gi|126574913|gb|EAZ79271.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
          Length = 51

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 26/47 (55%)

Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
          ++ ++A + ++ L +EI + +  YY   + +I D E++  +   + +
Sbjct: 1  MNHQEAAQRIAQLSKEIDHPNQLYYMEDQAVISDFEFNQSRNDLNLL 47


>gi|16265966|gb|AAL16689.1|AF358699_1 putative DNA ligase [Helicobacter hepaticus]
          Length = 84

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGV 272
           NPRNAA+G LR+L+      R L F    LG  + +   +  YE    +  LGF     +
Sbjct: 1   NPRNAAAGSLRQLDAKITAKRKLRFIA--LGHWAGLIRFESFYEAFNTITRLGFAPVPFL 58

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYD 298
                   I + YN + S R+  P  
Sbjct: 59  SYCEIIESIQNAYNVLFSQRNNYPIM 84


>gi|124009105|ref|ZP_01693788.1| leucine-rich repeat containing protein [Microscilla marina ATCC
           23134]
 gi|123985319|gb|EAY25239.1| leucine-rich repeat containing protein [Microscilla marina ATCC
           23134]
          Length = 640

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE-- 711
             G        + +E +     V+   L + T  ++VG+NP  KL KA ++G+ I+ +  
Sbjct: 278 LAGKFNGFDTKQLEEQLQNTNIVIDERLKKSTTHLVVGENPKKKLNKALEMGIPIVAQGR 337

Query: 712 -EQFLFLLQQY 721
            + FL  ++ +
Sbjct: 338 LKDFLHTIEDH 348


>gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 328

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLG 705
           +  ++ F+G     +R   ++  T+ G  V+  LSR T +++  D  +  +K  KA+Q G
Sbjct: 248 QGMRVAFSGD-TSTERELLEDRATEAGLHVATSLSRLTSLLVTNDPDSGTTKTAKARQYG 306

Query: 706 VKIMNEEQFLFLLQQYNTT 724
             +++E  F  LL      
Sbjct: 307 TPVVDEAAFGQLLADVEPA 325


>gi|120402192|ref|YP_952021.1| AAA ATPase [Mycobacterium vanbaalenii PYR-1]
 gi|119955010|gb|ABM12015.1| AAA ATPase [Mycobacterium vanbaalenii PYR-1]
          Length = 782

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 649 NKKLVFTGTLQKIQ-----RHKAQEYVTQLGAVVSAILSR-KTDIII---VGDNPGSKLE 699
             ++ FTGT Q        R + +   T  G      +S+ + D+++    G   G K  
Sbjct: 701 GVRICFTGTAQDPSGRIVERDEIERLATAAGLTPVKTVSKTRCDVLVTAEAGTQSG-KAR 759

Query: 700 KAQQLGVKIMNEEQFLFLL 718
           KA + G  +   ++F   L
Sbjct: 760 KAMEYGKPVFTADEFFAWL 778


>gi|169613767|ref|XP_001800300.1| hypothetical protein SNOG_10016 [Phaeosphaeria nodorum SN15]
 gi|160707220|gb|EAT82351.2| hypothetical protein SNOG_10016 [Phaeosphaeria nodorum SN15]
          Length = 790

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 1/101 (0%)

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
                     ++  +    E  V       K+  TG     QR   QE V + GA     
Sbjct: 102 MREVWLEGHDDLDVAALEEEHRVP-TFFGLKICLTGFDNPEQRRYIQETVDKNGAEYHGD 160

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           L++    +I     G K E A    +KI++ E F   L++ 
Sbjct: 161 LTKAVTHLIAATPTGKKYEHAVNWRMKIVSLEWFQQSLERG 201


>gi|317049607|ref|YP_004117255.1| BRCT domain-containing protein [Pantoea sp. At-9b]
 gi|316951224|gb|ADU70699.1| BRCT domain protein [Pantoea sp. At-9b]
          Length = 160

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG  +K  + +  E  T  G  V + +++   ++  G N G +K+  A+  GV I++
Sbjct: 86  ICFTG-FKKADKERLIECATANGMTVRSSVTQNLQLLCCGYNAGPTKVTAARMKGVVILD 144

Query: 711 EEQFLFLLQQYNT 723
           EEQF   ++    
Sbjct: 145 EEQFADFVKTGEI 157


>gi|290982408|ref|XP_002673922.1| poly(ADP-ribose) synthetase [Naegleria gruberi]
 gi|284087509|gb|EFC41178.1| poly(ADP-ribose) synthetase [Naegleria gruberi]
          Length = 969

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKLEKA 701
            + N K+  +G L  +++ + QE + + GA     +S     ++      D   +K++KA
Sbjct: 280 PLGNFKIACSGKLS-MKQSELQEIIEENGATFLKDVSSGCTHLVCSESEYDKETTKVKKA 338

Query: 702 QQLGVKIMNEE 712
           ++ GV I++E+
Sbjct: 339 KKQGVLIVDED 349


>gi|315048247|ref|XP_003173498.1| polymerase 2 ADP-ribosyltransferase 2 [Arthroderma gypseum CBS
           118893]
 gi|311341465|gb|EFR00668.1| polymerase 2 ADP-ribosyltransferase 2 [Arthroderma gypseum CBS
           118893]
          Length = 739

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII---VGDNPGSKLE 699
           +S  +  + +V +G+ +       +  V QLG   SA ++     +I        G+K +
Sbjct: 1   MSKILAGQVVVVSGSFRSYNHEAIKYIVEQLGGSFSATVTDACTHLITSKAAHPAGTKNQ 60

Query: 700 KAQQLG--VKIMNEEQFLF 716
           +A  LG  +KI++ +    
Sbjct: 61  QAIALGNDIKIVSLDWLTE 79


>gi|282599770|ref|ZP_05971815.2| conserved hypothetical protein [Providencia rustigianii DSM 4541]
 gi|282567766|gb|EFB73301.1| conserved hypothetical protein [Providencia rustigianii DSM 4541]
          Length = 168

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEE 712
           FTG L K  + K  E     G VV   ++    ++  G N    K++KA+++G+ I+NE 
Sbjct: 97  FTGFL-KADKEKLTELAADAGMVVRKSVTVHLKLLCYGYNASQMKMDKAREMGIIILNEN 155

Query: 713 QFLFLL 718
           QF   L
Sbjct: 156 QFREFL 161


>gi|167767031|ref|ZP_02439084.1| hypothetical protein CLOSS21_01549 [Clostridium sp. SS2/1]
 gi|167711006|gb|EDS21585.1| hypothetical protein CLOSS21_01549 [Clostridium sp. SS2/1]
 gi|291559629|emb|CBL38429.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [butyrate-producing bacterium SSC/2]
          Length = 509

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K R       LSI   +  +  L+++I  +   YY+Y+K  + D  YD + +    +   
Sbjct: 407 KPRSSTTNSKLSI---KDRIELLQRKIILNSIAYYKYNKSPMSDKAYDEMCKELVDMQKK 463

Query: 62  FP 63
           +P
Sbjct: 464 YP 465


>gi|145225728|ref|YP_001136406.1| AAA ATPase [Mycobacterium gilvum PYR-GCK]
 gi|145218214|gb|ABP47618.1| AAA ATPase [Mycobacterium gilvum PYR-GCK]
          Length = 779

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 10/83 (12%)

Query: 649 NKKLVFTGTLQKIQ-----RHKAQEYVTQLGAVVSAILSR-KTDIII---VGDNPGSKLE 699
             ++ FTGT Q        R + +   T  G V    +++ + D+++    G   G K  
Sbjct: 697 GARICFTGTAQDPDGRVVERDEMERLATAAGLVPVKSVTKTRCDVLVTAEAGTQSG-KAR 755

Query: 700 KAQQLGVKIMNEEQFLFLLQQYN 722
           KA + G  ++  + F   L  + 
Sbjct: 756 KALEYGKPVLCADDFFAWLAAHG 778


>gi|291222915|ref|XP_002731461.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
          Length = 1075

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKLEKAQ 702
           +++ K+V  G L +       + + QLG  V   +++    +I      +N   K+++A+
Sbjct: 261 LQDCKIVLVGKLSE-SNKDITKKIKQLGGEVVTKINKNVACVISTQDEVNNMSKKIKEAK 319

Query: 703 QLGVKIMNEEQFLFLLQQYNTTLRIH 728
             GV +++E+ FL  +++    L I 
Sbjct: 320 AAGVHVVSED-FLNTVKKGGAALMIQ 344


>gi|115944996|ref|XP_001196870.1| PREDICTED: similar to Poly [ADP-ribose] polymerase 1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase 1)
           (Poly[ADP-ribose] synthetase 1), partial
           [Strongylocentrotus purpuratus]
          Length = 975

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPG 695
           +K     + N  +V  G L K    + +  +  LG  V+  ++ +T  +I  +       
Sbjct: 350 KKPEDKALYNCTIVLHGKLSK-SNKQLKTTIQDLGGEVATKITPETACVISNEAEVKKMN 408

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
            K+++AQ   V +++E+ FL  ++     L I
Sbjct: 409 KKMKEAQSNDVHVVSED-FLDAVKNGGAALMI 439


>gi|120601910|ref|YP_966310.1| hypothetical protein Dvul_0862 [Desulfovibrio vulgaris DP4]
 gi|120562139|gb|ABM27883.1| hypothetical protein Dvul_0862 [Desulfovibrio vulgaris DP4]
          Length = 240

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 23/163 (14%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           +LAK   +       I  ++     D      +  +        V    +P         
Sbjct: 83  ALAKKDWAVDALHCRIERMLDDGMIDIQEQKEIIEI--------VRLAHDPVPCA----- 129

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
            +E  P    ++      +  ++   TG  +  +R   ++ +   G      +S +  ++
Sbjct: 130 PRECLPIGVPYDYPAPELLPAQRFCLTGKFRAGKREYCKQIIKSFGGTYRNCISGEECVL 189

Query: 689 IVG-----DNPGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721
           +VG     D+  SKL KA         + I++EE +  +  ++
Sbjct: 190 VVGSLGWNDSFSSKLHKAIAWRAGNARISIVSEEHWWKVFGKH 232


>gi|298706162|emb|CBJ49090.1| expressed unknown protein [Ectocarpus siliculosus]
          Length = 306

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--- 694
             +      ++ K    TG L    R + Q  +   GA VSAI+ ++   ++   +    
Sbjct: 2   APQAGNGGCLQGKVFGLTGELA---RKELQPMLKAHGATVSAIIHKRVSFVLCTPDAVKY 58

Query: 695 -GSKLEKAQQLGVKIMNEEQFLF 716
              K+ KA + G+ +++ + F+ 
Sbjct: 59  NTQKVRKALKHGIPLVS-QGFIA 80


>gi|300726678|ref|ZP_07060112.1| exonuclease family [Prevotella bryantii B14]
 gi|299776048|gb|EFI72624.1| exonuclease family [Prevotella bryantii B14]
          Length = 480

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 644 SSEIENKKLVFTGTLQK-------IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
           +S   +KK+V TG   +       I R      +   GA +   +S  TD + VG   G 
Sbjct: 387 NSPYYDKKVVITGVFYQGADKQNVIDRIDIARQLKACGADIDLKVSEATDFVFVGKEAGA 446

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           +KL   ++ G+K + ++    L++
Sbjct: 447 AKLRNIKKYGIKTLGQKDVETLMK 470


>gi|330830139|ref|YP_004393091.1| hypothetical protein B565_2439 [Aeromonas veronii B565]
 gi|328805275|gb|AEB50474.1| hypothetical protein B565_2439 [Aeromonas veronii B565]
          Length = 156

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKI 708
            ++ FTG   K ++ +  +    +  +V   ++   D++  GDN G SK+  A+   V +
Sbjct: 80  LEVCFTG-FSKKEKDELVQLAESMQCLVRKSVTTDLDVLCYGDNAGPSKMRDARNKSVLV 138

Query: 709 MNEEQFLFLLQQYNT 723
           +N+ +F+ +L     
Sbjct: 139 INKVEFISMLNTGEI 153


>gi|330924956|ref|XP_003300850.1| hypothetical protein PTT_12211 [Pyrenophora teres f. teres 0-1]
 gi|311324811|gb|EFQ91054.1| hypothetical protein PTT_12211 [Pyrenophora teres f. teres 0-1]
          Length = 838

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 20/185 (10%)

Query: 557 LGIRHVGAEIARS-LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI--- 612
           + + H G   ++  LA   L   + A E    +A       + I++ L  D+    +   
Sbjct: 1   MDVNHAGYGTSQLPLAGAILCCTSIAPEQRAQLAAIGAQMGATIKLDLTSDVTHLIVGST 60

Query: 613 ----VEFYQ---------NPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTG 656
                 +           +P  + A+  +      ++       +          +  TG
Sbjct: 61  DSPKYRYVAKSRDDVKVLSPEWLHALRDVWMTGDDNLDVLALENEYRMPTFFGLNICLTG 120

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
                QR   QE V   G      L++    +I     G K E A   G+KI+  E    
Sbjct: 121 FDNPDQRRNIQEKVDANGGDYHGDLTKSVTHLIAATPSGKKYEHALNWGIKIVALEWLEQ 180

Query: 717 LLQQY 721
            L++ 
Sbjct: 181 SLERG 185


>gi|255565595|ref|XP_002523787.1| poly [ADP-ribose] polymerase, putative [Ricinus communis]
 gi|223536875|gb|EEF38513.1| poly [ADP-ribose] polymerase, putative [Ricinus communis]
          Length = 815

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKA 701
                 +  +G L +      ++ + + G  VS  +   T +++          SKL +A
Sbjct: 188 PFAGMIISLSGRLSR-THQYWKKTIEKYGGKVSNSVIGVTCLVVSPAERERGGSSKLSEA 246

Query: 702 QQLGVKIMNEEQFLFLLQQ 720
            +  + +  EE  L  +++
Sbjct: 247 MERNIPVAREEWLLDSIEK 265


>gi|229587518|ref|YP_002860556.1| hypothetical protein CLJ_0249 [Clostridium botulinum Ba4 str.
          657]
 gi|229260200|gb|ACQ51237.1| hypothetical protein CLJ_0249 [Clostridium botulinum Ba4 str.
          657]
          Length = 125

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 18 RKELSSL----EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
          +K +  L     +++  H   YY+ +  +I D  YD   R  + +   +PDL 
Sbjct: 30 KKAIIELINKRRRQVLVHSCTYYRLNDSLIDDYTYDKWARELENLQDMYPDLL 82


>gi|307688028|ref|ZP_07630474.1| NAD-dependent DNA ligase LigB [Clostridium cellulovorans 743B]
          Length = 80

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532
               ++    ++G+G+       ++            IF+       +  +++N  G   
Sbjct: 1   VWLGAKQVLGLDGIGEAGWRALHQTHR-------FEHIFS---WLLLTPEQLQNTPGIAK 50

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIR 560
                L+   N  R     R++ ++GI 
Sbjct: 51  SKSAQLWHQFNLARKQPFTRWVMAMGIP 78


>gi|330893771|gb|EGH26432.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. mori str.
           301020]
          Length = 60

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           +  +   IGR+G +TPV  L PV +    ++  +  +    + 
Sbjct: 1   MRKVSFNIGRSGRITPVLELTPVRLDDRTVSRISTGSLQRWQS 43


>gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein
            [Corynebacterium matruchotii ATCC 14266]
 gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein
            [Corynebacterium matruchotii ATCC 14266]
          Length = 2479

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 624  AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR-----HKAQEYVTQLGAVVS 678
             + A    +S  +     N  S  ++   V T TLQ   R      +A E       ++ 
Sbjct: 2371 WLAADTLGISREVVEEILNTGSTGDDATQVSTLTLQPGDRVAFTGTRAGEDAAVAAGLIV 2430

Query: 679  AILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              +++ T +++  D  +   K +KA+Q  + I+ E +F  L+  
Sbjct: 2431 GGVTKATVVLVAADPDSMSGKAKKARQYHIPIITEHRFNQLVAD 2474


>gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
            33806]
 gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
            33806]
          Length = 2493

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 624  AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR-----HKAQEYVTQLGAVVS 678
             + A    +S  +     N  S  ++   V T TLQ   R      +A E       ++ 
Sbjct: 2385 WLAADTLGISREVVEEILNTGSTGDDATQVSTLTLQPGDRVAFTGTRAGEDAAVAAGLIV 2444

Query: 679  AILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              +++ T +++  D  +   K +KA+Q  + I+ E +F  L+  
Sbjct: 2445 GGVTKATVVLVAADPDSMSGKAKKARQYHIPIITEHRFNQLVAD 2488


>gi|260102980|ref|ZP_05753217.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
 gi|260083211|gb|EEW67331.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
 gi|328464560|gb|EGF35931.1| DNA polymerase III [Lactobacillus helveticus MTCC 5463]
          Length = 317

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 54/129 (41%), Gaps = 17/129 (13%)

Query: 612 IVEFYQNPRNICAVEALLKEV------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +   +        +E  + ++         +  ++    + +++K +V +G L  + +  
Sbjct: 190 VYNDFNQHFTEDLLEQAIGKIKNVDLTGDEVDYYQLGFRNPVQDKNIVLSGNL-HMDQRD 248

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD-NPGSK----LEKAQQL-----GVKIMNEEQFL 715
           A + +  +G  +   + + T+ +I+GD +   K    L +A  L      +K ++E  FL
Sbjct: 249 AGKMINNMGGQLDQNVEKTTNYLIMGDHDFFRKNNEDLNRAHLLIKDGAKIKRLSESFFL 308

Query: 716 FLLQQYNTT 724
            +L  +  +
Sbjct: 309 SMLDDWARS 317


>gi|227523370|ref|ZP_03953419.1| hypothetical protein HMPREF0519_1079 [Lactobacillus hilgardii ATCC
           8290]
 gi|227089476|gb|EEI24788.1| hypothetical protein HMPREF0519_1079 [Lactobacillus hilgardii ATCC
           8290]
          Length = 93

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---DNPGSKLEKAQQ 703
           + + ++VFTG L  + R +A    +  GA+  A ++++T+ ++VG      G  L   ++
Sbjct: 4   LTDMEIVFTGKLASMPRKQAFAVASAFGALPKAQVTQQTNYLVVGAIHKTIGEPLTT-RK 62

Query: 704 LGVK-I--MNEEQFLF 716
           L +  I  + E+ F+ 
Sbjct: 63  LDIPDIKHITEKDFID 78


>gi|46123093|ref|XP_386100.1| hypothetical protein FG05924.1 [Gibberella zeae PH-1]
          Length = 752

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQ--KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692
              +  V   ++   +  +G            +  + + G   +  +++ T  ++  D  
Sbjct: 7   AAAKAPVDPPLDGCAIAVSGKFDDIGHSHASLETLIRRHGGTFTRSVTKATTHVVSTDDD 66

Query: 693 -NPGS-KLEKAQQLGVKIMNEEQFLF 716
            N GS K+  AQ  G+ IMN    L 
Sbjct: 67  FNSGSNKVTTAQAKGLPIMNPSWLLD 92


>gi|297627178|ref|YP_003688941.1| ATPase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922943|emb|CBL57525.1| ATPase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 814

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 11/106 (10%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTL-----QKIQRHKAQEYVTQL 673
           +  +E        +        S+E   +   ++ FTG++       I R   ++   + 
Sbjct: 700 LEQLERQWGVTIITDAMRRPADSAEQVFVPGARVCFTGSVIDARGTTISRSDMEQLAAEH 759

Query: 674 GAVVSAILSR-KTDIIIVGDNPGS--KLEKAQQLGVKIMNEEQFLF 716
             V    ++R + D+++  D      K  KA  LG  +++  +FL 
Sbjct: 760 ELVAVPSVTRTRCDVLVAADTASRSGKARKALDLGKPVISAAEFLA 805


>gi|168021393|ref|XP_001763226.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685709|gb|EDQ72103.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 865

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
               + S +  R   +         +V +G L + ++   +  + + G  V+  +     
Sbjct: 184 EKSHDASKNPKRVLASGEKPFLGMTIVLSGRLSR-KQGARRADIEKHGGKVANAIKPGVT 242

Query: 687 IIIV------GDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +I       G    +K   A  L + ++ EE     ++Q
Sbjct: 243 CVIADARDASGGGGSTKSADAISLNIPVVREEWITDCIKQ 282


>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 328

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 647 IENKKLVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQ 703
           ++  K+VFTG TL    R +  +     G  V + +SR T +++  D     +K  +A+ 
Sbjct: 229 VQGMKVVFTGETLT--PRQELADRAAGAGLNVMSTVSRFTSVLVAADVHAASAKARRARA 286

Query: 704 LGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
            GV I++E  FL LLQ     +R+ + +
Sbjct: 287 EGVPIIDEPTFLRLLQDVRPGVRLDEPE 314


>gi|302675044|ref|XP_003027206.1| hypothetical protein SCHCODRAFT_113840 [Schizophyllum commune H4-8]
 gi|300100892|gb|EFI92303.1| hypothetical protein SCHCODRAFT_113840 [Schizophyllum commune H4-8]
          Length = 1033

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
                      TGTL K+      +  T+LGA  +   + K   +I   + G+K   A +
Sbjct: 6   PRPFAGMVFCATGTLDKMS---LFKKATELGAKSTHAFTDKVTHLIASGHGGAKYNCALE 62

Query: 704 LGVKIM 709
             + I+
Sbjct: 63  RRIPIL 68


>gi|307320298|ref|ZP_07599716.1| Tetratricopeptide TPR_2 repeat protein [Sinorhizobium meliloti
           AK83]
 gi|306894020|gb|EFN24788.1| Tetratricopeptide TPR_2 repeat protein [Sinorhizobium meliloti
           AK83]
          Length = 361

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 15/84 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  +     G L    R  A   V + G  +   ++R+T  ++ G      L KA +  +
Sbjct: 3   LAGRTFGIVGALAAFPRRLAAREVERQGGHLRRGVNRQTKFVVFGRGL---LAKASEAEI 59

Query: 707 K------------IMNEEQFLFLL 718
           +            +++E  FL LL
Sbjct: 60  EARFDSESGQRRRVLSENGFLRLL 83


>gi|307308872|ref|ZP_07588560.1| Tetratricopeptide TPR_2 repeat protein [Sinorhizobium meliloti
           BL225C]
 gi|306900677|gb|EFN31289.1| Tetratricopeptide TPR_2 repeat protein [Sinorhizobium meliloti
           BL225C]
          Length = 361

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 15/84 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  +     G L    R  A   V + G  +   ++R+T  ++ G      L KA +  +
Sbjct: 3   LAGRTFGIVGALAAFPRRLAAREVERQGGHLRRGVNRQTKFVVFGRGL---LAKASEAEI 59

Query: 707 K------------IMNEEQFLFLL 718
           +            +++E  FL LL
Sbjct: 60  EARFDSESGQRRRVLSENGFLRLL 83


>gi|16265142|ref|NP_437934.1| hypothetical protein SM_b20687 [Sinorhizobium meliloti 1021]
 gi|15141281|emb|CAC49794.1| probable O-linked GlcNAc transferase [Sinorhizobium meliloti 1021]
          Length = 361

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 15/84 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  +     G L    R  A   V + G  +   ++R+T  ++ G      L KA +  +
Sbjct: 3   LAGRTFGIVGALAAFPRRLAAREVERQGGHLRRGVNRQTKFVVFGRGL---LAKASEAEI 59

Query: 707 K------------IMNEEQFLFLL 718
           +            +++E  FL LL
Sbjct: 60  EARFDSESGQRRRVLSENGFLRLL 83


>gi|320168213|gb|EFW45112.1| polymerase [Capsaspora owczarzaki ATCC 30864]
          Length = 968

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKA 701
             ++  +VF G+     +      V +LG  V+  ++ KT I+I       N G K+  A
Sbjct: 342 PFDSMTIVFAGSNFSTTQKALGAIVKELGGAVATNVTDKTTIVISTPEEVANEGKKISDA 401

Query: 702 QQLGVKIMNEE 712
            +  + I++E+
Sbjct: 402 LERHIPILSED 412


>gi|189199660|ref|XP_001936167.1| subunit of DNA polymerase II [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983266|gb|EDU48754.1| subunit of DNA polymerase II [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 811

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 20/185 (10%)

Query: 557 LGIRHVGAEIARS-LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI--- 612
           + + H G   ++  LA   L   + A E    +A       + I++ L  D+    +   
Sbjct: 1   MDVNHAGYGTSQLPLAGAILCCTSIAPEQRAQLAAIGAQMGATIKLDLTSDVTHLIVGST 60

Query: 613 ----VEFYQ---------NPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTG 656
                 +           +P  + A+  +      ++      +          K+  TG
Sbjct: 61  DSPKYRYVAKSRDDVKVLSPEWLEALREVWMTGDDNLDVLALEKDYRMPTFSGLKICLTG 120

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
                QR   Q+ V   G      L++    +I     G K E A   G+KI+  E    
Sbjct: 121 FDNPDQRKSIQDKVDANGGEYHGDLTKSVTHLIAATPSGKKYEHALNWGMKIVALEWLEQ 180

Query: 717 LLQQY 721
            L++ 
Sbjct: 181 SLERG 185


>gi|66800895|ref|XP_629373.1| hypothetical protein DDB_G0292820 [Dictyostelium discoideum AX4]
 gi|26189990|emb|CAD58666.1| (ADP-ribosyl)transferase [Dictyostelium discoideum]
 gi|60462759|gb|EAL60959.1| hypothetical protein DDB_G0292820 [Dictyostelium discoideum AX4]
          Length = 700

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 13/117 (11%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           E +    + +     K ++   +     F+GT   + + +  + V   GA  S   + K 
Sbjct: 13  EDVKTTTTTTTSTSTKPLTEIFDGIVFCFSGTFS-VTQTELTKKVEGCGASTSKTCTAKV 71

Query: 686 DIII--VGD--NPGSKLEKAQQLGVKIMNEEQFL-------FLLQQYNTTLRIHDDD 731
             ++  V D    G+ + KA + G+ I+ E  F+         L++ + +L   +DD
Sbjct: 72  THLVSTVDDFKKNGTAVSKALKSGIPIVTE-GFITKSIEASKKLEEKDYSLSSSNDD 127


>gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
 gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
          Length = 389

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQQL 704
           ++  ++ F+G   + +R +        G  V+  +SR+T +++  D  G   K+  A  L
Sbjct: 289 VQGMRVAFSGP-TRTERGELVGRAVAAGLHVTETVSRRTSLLVTNDARGVTRKVRTAALL 347

Query: 705 GVKIMNEEQFLFLLQ 719
              +  EE FL LL 
Sbjct: 348 NTPVRGEEDFLELLA 362


>gi|115399516|ref|XP_001215347.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114192230|gb|EAU33930.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 779

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 621 NICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            I AV     +   +  R   E +         +  TG      R+  Q   T  GA   
Sbjct: 80  WIEAVRQSWMQGDDTDIRALEELHRLPTFAGLSICITGFEDMAFRNYIQNTATANGAEFR 139

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             L++    +I     G K + A Q  +KI+  + F   L++ 
Sbjct: 140 KDLTKSVTHLIARSPEGQKYKFATQWNIKIVTMKWFTDSLERG 182


>gi|289706337|ref|ZP_06502695.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus SK58]
 gi|289556832|gb|EFD50165.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus SK58]
          Length = 371

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 29/121 (23%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
               E    +     +    +  + +VFTG +  + R  A+      GA  +  +   T 
Sbjct: 244 RWPDEGVNPLPNPAADPGHPLFGQTVVFTGGI-GMSRQSAKTRAAAQGAQTANRVGAATT 302

Query: 687 IIIVGDN-----------------------PGSKLEKA---QQLG--VKIMNEEQFLFLL 718
           +++VGD                           K   A   ++ G  + +++E +FL +L
Sbjct: 303 MLVVGDGFEAADLHRPRAEDGAPQAVATALAHRKTRDALRRRERGQAIALVSEGEFLQML 362

Query: 719 Q 719
            
Sbjct: 363 D 363


>gi|215687334|dbj|BAG91866.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 901

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
              +   +  HE           +  T  L   +R +  + + Q G   SA L+R+   +
Sbjct: 187 QCWIEHRVVPHEPYRIPPFSGLNICIT-KLNVDERRELAKIIVQNGGQYSANLTRRCTHL 245

Query: 689 IVGDNPGSKLEKAQQLG 705
           +  +  G K   AQ+ G
Sbjct: 246 VSNEPGGDKYVVAQKWG 262


>gi|195998397|ref|XP_002109067.1| hypothetical protein TRIADDRAFT_19562 [Trichoplax adhaerens]
 gi|190589843|gb|EDV29865.1| hypothetical protein TRIADDRAFT_19562 [Trichoplax adhaerens]
          Length = 968

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 19/92 (20%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV----GD--NPGSKLEK 700
           ++   +V  G L K  +   ++ +  LG  V   LS   DI++     G+    G K+++
Sbjct: 377 LKGVAIVIIGKLSK-TQAALKKDIESLGGTVEKDLSS--DIVLCISSNGEVKKNGKKIKE 433

Query: 701 AQQLGVKIMNEEQFL---------FLLQQYNT 723
           A++L + I++E+ FL          L+ ++N 
Sbjct: 434 ARELKLPIVDED-FLTAVTDGDPKALVSKHNI 464


>gi|317152159|ref|YP_004120207.1| hypothetical protein Daes_0439 [Desulfovibrio aespoeensis Aspo-2]
 gi|316942410|gb|ADU61461.1| hypothetical protein Daes_0439 [Desulfovibrio aespoeensis Aspo-2]
          Length = 120

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ----LGAVVSAILSRKT 685
            E+  +I +   +   +    ++ FTG      R K +  + +     G +V + ++   
Sbjct: 26  WELWEAICKLPGSFRQQFYAPEICFTG----FGRGKEKAMLQEIARMNGYIVRSDVTNGL 81

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
             +  G  PG +K+EKA+  GV++++ E FL
Sbjct: 82  TFLCCGPEPGPAKIEKAEFRGVEMISLESFL 112


>gi|307180331|gb|EFN68364.1| PAX-interacting protein 1 [Camponotus floridanus]
          Length = 1274

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             +  +  N   V  L    +                + + F+G  +  +R K +  +  
Sbjct: 874 AHWLSDVVNKQQV--LPPWHALHFPTPFSLTELPCVKQIVSFSG-FEGEERAKVKHMLEA 930

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           LGA  +   S+   +++     G K +KA++    ++N +    LL
Sbjct: 931 LGAKYTNYFSKHNTLLVCRRPDGQKYKKAREWSTNVVNAQWLTDLL 976


>gi|321467495|gb|EFX78485.1| hypothetical protein DAPPUDRAFT_246317 [Daphnia pulex]
          Length = 71

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
               +    +V T  L+ + R +A+  V + G      +S+ T 
Sbjct: 28  APGCLTGLTIVVTSILESLHREEAEGLVKKYGGKAPKAVSKNTT 71


>gi|311068875|ref|YP_003973798.1| hypothetical protein BATR1942_09670 [Bacillus atrophaeus 1942]
 gi|310869392|gb|ADP32867.1| hypothetical protein BATR1942_09670 [Bacillus atrophaeus 1942]
          Length = 100

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 25 EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           ++I  H   YYQ ++ II D  +D   +    +   +P+ +R
Sbjct: 13 RRQILVHSFLYYQLNENIIADHTFDLWSKELVQLQEKYPEESR 55


>gi|157130592|ref|XP_001661932.1| poly [adp-ribose] polymerase [Aedes aegypti]
 gi|108871855|gb|EAT36080.1| poly [adp-ribose] polymerase [Aedes aegypti]
          Length = 999

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----D 692
               K     +   + V  G      + + +E + +LG  VS+ ++  T  II      +
Sbjct: 379 EPKIKREKPPLYELQFVILGK-TATPKDELKEKILKLGGKVSSKITNTTAAIISTPDEVE 437

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLF 716
             GS++++A+ L ++++ E+ FL 
Sbjct: 438 RMGSRMQEAKDLQIQVVPED-FLE 460


>gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 406

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 8/177 (4%)

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L     +L  R +    A  L     S          +        L+      V     
Sbjct: 230 LAMLDRALMDRQISVSEADGLVALAESLDISRSTAEQLHIKYMISMLAAAWDDGVVTTEE 289

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-----NKKLVFTGTLQKIQRH 664
           +A +    N   I         V+P  G+ E+  ++          K+V TG + +  R+
Sbjct: 290 EADLRVVGNLLGISQESITRGLVAPVAGQDEETGAAVQSLVLGGGDKIVLTGEMSR-DRN 348

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  +   G V    +++   +++  D  +   K +KA+  G+ ++ E     LL+
Sbjct: 349 DIEADLRAAGFVPHPAITKAVRLLVAADPDSLSGKAKKARSYGIPVVGEPYLTTLLR 405


>gi|227821159|ref|YP_002825129.1| superfamily I DNA and RNA helicases and helicasesubunits-like
           protein [Sinorhizobium fredii NGR234]
 gi|227340158|gb|ACP24376.1| superfamily I DNA and RNA helicases and helicasesubunits-like
           protein [Sinorhizobium fredii NGR234]
          Length = 302

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 9/87 (10%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           A    V    G  E +     + +  V TG      R      +   G    + + R T+
Sbjct: 195 ATFGNVGVLEGALEDHNDIVFDQRMFVLTGKFTLGPRKAIHGMIADRGGDFKSSVCRNTN 254

Query: 687 IIIVGDNP---------GSKLEKAQQL 704
            + V             G K+ KA +L
Sbjct: 255 YLCVAAEASRDWRHSHEGLKIMKAIEL 281


>gi|161507964|ref|YP_001577928.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348953|gb|ABX27627.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 317

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 54/129 (41%), Gaps = 17/129 (13%)

Query: 612 IVEFYQNPRNICAVEALLKEV------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +   +        +E  + ++         +  ++    + +++K +V +G L  + +  
Sbjct: 190 VYNDFNQHFTEDLLEQAIGKIKNVDLTGDEVDYYQLGFRNPVQDKNIVLSGNL-HMDQRD 248

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD-NPGSK----LEKAQQL-----GVKIMNEEQFL 715
           A + +  +G  +   +   T+ +I+GD +   K    L +A+ L      +K ++E  FL
Sbjct: 249 AGKMINNMGGQLDQNVENTTNYLIMGDHDFFRKNNEDLNRARLLIKDGAKIKRLSESFFL 308

Query: 716 FLLQQYNTT 724
            +L  +  +
Sbjct: 309 SMLDDWARS 317


>gi|75759191|ref|ZP_00739293.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228904256|ref|ZP_04068351.1| NAD-dependent DNA ligase [Bacillus thuringiensis IBL 4222]
 gi|228931227|ref|ZP_04094163.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|74493306|gb|EAO56420.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228828509|gb|EEM74209.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228855341|gb|EEM99905.1| NAD-dependent DNA ligase [Bacillus thuringiensis IBL 4222]
          Length = 321

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 102/307 (33%), Gaps = 42/307 (13%)

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ C  C S +      K   ++    C+         L  +  F      +I   G+  
Sbjct: 23  PNNCFSCGSPL------KINPVLTHLTCSNPRCIDKITLRTVAMFTQLGVVDI---GEPT 73

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    +     F I  P   F  +     S +  EN        + ++Y  +  +R+++L
Sbjct: 74  IKKLIR----IFGIDCPLIFFCYEPSDWQSVS-YENYNESLKRKIDDVYGQLANKRDMTL 128

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +FI    + +V    A  L   +       +    + +         + +     + + 
Sbjct: 129 TQFIQIANLPNV-QTSADKL---FEDINTLDEFYEQLESGGVAYIQKKLGIQRENSLKSY 184

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ--- 667
            + E +   +     + L   +S        +  ++I  K +  T  +    R KA+   
Sbjct: 185 KLYETFLEYK-----KDLQSVLSTGFINIIADTRADIRIKAVC-TDEVGAPFRKKAEFYT 238

Query: 668 EYVTQLGAVV----SAILSRKTDIII-VGDNPGS-----KLEKAQQL-----GVKIMNEE 712
                 G  +        ++  D++I  G +        K++KA+       G+ I+   
Sbjct: 239 YMDENFGDKIYIDWGKSATKSMDVLIWAGADGTPARYTNKVQKAENWNEQGEGIPILTAN 298

Query: 713 QFLFLLQ 719
           QF+ ++Q
Sbjct: 299 QFIEIVQ 305


>gi|310800017|gb|EFQ34910.1| hypothetical protein GLRG_10054 [Glomerella graminicola M1.001]
          Length = 752

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP----GSKLEK 700
             +    +  +GT  K +R + + +++ LGA ++  +++KT  +I          +K+  
Sbjct: 24  QPLNGAVIAISGTFDK-KRTELESWLSSLGAGIAKSITKKTTHLISTPEDFKALTTKVAS 82

Query: 701 AQQLGVKIMN 710
           AQ+  + I++
Sbjct: 83  AQKNDIPIVS 92


>gi|270009278|gb|EFA05726.1| hypothetical protein TcasGA2_TC015410 [Tribolium castaneum]
          Length = 1310

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 657  TLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            TL       R++ +  +   GA  ++  S+   ++I     G+K   A++ G+ ++N
Sbjct: 952  TLSGFTGCERNRVKHMINYTGAKFTSYFSKHNTLLIAAKGEGAKYNHAKKWGIPVVN 1008



 Score = 38.5 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 647 IENKKLVFT--GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             N     +  G+     R      +T  G +V   L+ K   ++  D    K EKA  L
Sbjct: 106 FTNLVFCLSKVGS----DREALWAVITYHGGLVQLNLTNKCTHLVTVDTNSPKYEKAANL 161

Query: 705 G---VKIMNEE 712
           G   + ++  +
Sbjct: 162 GADKITVITPD 172


>gi|189238097|ref|XP_001813810.1| PREDICTED: similar to conserved hypothetical protein [Tribolium
            castaneum]
          Length = 1341

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 657  TLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            TL       R++ +  +   GA  ++  S+   ++I     G+K   A++ G+ ++N
Sbjct: 967  TLSGFTGCERNRVKHMINYTGAKFTSYFSKHNTLLIAAKGEGAKYNHAKKWGIPVVN 1023



 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 31/179 (17%)

Query: 543 NKRRNISLERFIFSL----GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            K R  S  + +  L     +  VG   A  L  Y+  Y        N   ++  D   L
Sbjct: 31  EKVRENSTPKQLIDLFQVVDLLKVGG--AERL-NYFSDYVTHLICGENAEENDITDATDL 87

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT--G 656
             +P V           + + R    V       +         ++    N     +  G
Sbjct: 88  YEIPAVTSKWV------FASARLKKLVNTKPYVYN---------LNKLFTNLVFCLSKVG 132

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG---VKIMNEE 712
           +     R      +T  G +V   L+ K   ++  D    K EKA  LG   + ++  +
Sbjct: 133 S----DREALWAVITYHGGLVQLNLTNKCTHLVTVDTNSPKYEKAANLGADKITVITPD 187


>gi|295134473|ref|YP_003585149.1| hypothetical protein ZPR_2630 [Zunongwangia profunda SM-A87]
 gi|294982488|gb|ADF52953.1| protein containing BRCA1 C Terminus (BRCT) domain [Zunongwangia
           profunda SM-A87]
          Length = 141

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-K 697
            ++ ++ E + +K++  G L K  + + +E +      V   +S +T I+I G N     
Sbjct: 37  KKRTIAEEFKGQKVLIDGHLNKDNKTEIKEQLKAWNVEVEPKMSTETGILITGKNADELV 96

Query: 698 LEKAQQLGVKIMNEEQFLFL 717
           +E+A+  G KI +EE FL L
Sbjct: 97  IEEAKAFGTKIYSEESFLAL 116


>gi|218659837|ref|ZP_03515767.1| NAD-dependent DNA ligase LigA [Rhizobium etli IE4771]
          Length = 39

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 22/27 (81%)

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              GSKL+KA++LGV+ M+E+++L L+
Sbjct: 11  PGAGSKLDKARELGVQTMDEDEWLALI 37


>gi|296420139|ref|XP_002839638.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635821|emb|CAZ83829.1| unnamed protein product [Tuber melanosporum]
          Length = 866

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 60/175 (34%), Gaps = 20/175 (11%)

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L +    +G RHV    +               ++            + +RV  VG 
Sbjct: 29  RTTLAKKAVDMGARHVLDLTSDV-------THLICADLTTPKYKYVAKMRADVRVMGVG- 80

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
               A+ + + N  +I  ++   +   P             +   +  TG  +  +R K 
Sbjct: 81  -WVDAMYDLWINGEDINPIDFNEEYKFP-----------TFQGLAISLTGIQELSERKKI 128

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           ++     GA     L++    +I   + G K + A+  G++I+  E     L++ 
Sbjct: 129 EDIARSHGASYHPDLTKSVSHLIAAISEGKKYDFARNNGIRIVTIEWLYDSLERG 183


>gi|307297547|ref|ZP_07577353.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916807|gb|EFN47189.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 256

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 13/191 (6%)

Query: 465 SAQQLERLKHFVS-------RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517
            A+    + +  S        D   + G+G++ L  F K    A S    AD+ TL    
Sbjct: 67  PAKARAIIDYRTSVGQFGSVEDILQVRGIGEKTLSNFRKMVTVAGSATTLADVNTLIDIN 126

Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI-ARSLAKYYLS 576
           +     +++I G G+     + +     +N S       L +  +G  I +  LA     
Sbjct: 127 KADVLSLQDIPGIGEAKAKAIVEFRE--KNGSFRTSDDLLKVPGIGPSILSEILASIVPL 184

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF---YQNPRNICAVEALLKEVS 633
             +  Q  +  +  N  D   L  +P VG +IA+ IVEF   +   R+   +E +     
Sbjct: 185 VGSEKQSGSLKVNVNTADEEVLCGLPGVGPVIAKRIVEFRASFGPFRSYEDLERVSGIGE 244

Query: 634 PSIGRHEKNVS 644
            +I   ++ + 
Sbjct: 245 KTIANLKELIE 255


>gi|315121970|ref|YP_004062459.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|315122938|ref|YP_004063427.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495372|gb|ADR51971.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496340|gb|ADR52939.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 127

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQY-SKPIILDSEYDALKRRCDAIAHAFPD 64
             P+  LS  +A  E   L + + +H   YY+   +  +LD++YD ++ R   +A  FP+
Sbjct: 54  FKPVSQLSFWEALIETEYLTKIVLHHRRWYYRLSDETPLLDADYDKIEIRIIKLAEHFPE 113

Query: 65  LARSEDP 71
           L     P
Sbjct: 114 LYSLAHP 120


>gi|326429630|gb|EGD75200.1| poly polymerase [Salpingoeca sp. ATCC 50818]
          Length = 899

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 13/140 (9%)

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
           +    +  + ++   A+VE      +        +  S      +   + E++       
Sbjct: 190 VDCAEIEDIAELKKSALVE---EEGHPDGPGFDPRVPSEDEDDDDVPPNMELKGMTFKLI 246

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKAQQ----LGVK 707
           GT     R + +  + + G  VS   S +   II G+     P +K  KA +     GV 
Sbjct: 247 GTFSTP-RKELEATIAEHGGAVSNK-SAEITHIIAGEKEIAKPKTKRTKAYKQAAATGVP 304

Query: 708 IMNEEQFLFLLQQYNTTLRI 727
           IM EE    L  +    L++
Sbjct: 305 IMKEEFITDLCGRSGPGLKL 324


>gi|297808239|ref|XP_002872003.1| poly polymerase 3 (PARP-3) ADP-ribosyltransferase 3 [Arabidopsis
           lyrata subsp. lyrata]
 gi|297317840|gb|EFH48262.1| poly polymerase 3 (PARP-3) ADP-ribosyltransferase 3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 815

 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII--VGDNP 694
            R   +         +   G L +      ++ + + G  VS  +   T +++       
Sbjct: 178 KRELGSADKPFAGMMISLMGRLTR-THQYWKKKIERNGGKVSNTVQGVTCLVVSPAERER 236

Query: 695 G--SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           G  SK+ +A + G+ +++E   +  ++++  
Sbjct: 237 GGTSKMVEAMEQGLPVVSEAWLIDSVEKHEA 267


>gi|224541140|ref|ZP_03681679.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525949|gb|EEF95054.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM
           15897]
          Length = 297

 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 15/84 (17%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NPGSKLEKA 701
            + FTG L    + + + +V Q G + S  ++ +T  +++G              K++KA
Sbjct: 211 TVAFTGKLAH-TKQEIESFVEQDGMIPSFHVTTQTKYLVIGKKDYQQTRYQKGNKKIKKA 269

Query: 702 QQL-----GVKIMNEEQFLFLLQQ 720
             L      ++I++E+Q++ ++++
Sbjct: 270 ITLSRQGQDIRILHEDQYIDMVRK 293


>gi|284032480|ref|YP_003382411.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
 gi|283811773|gb|ADB33612.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
          Length = 415

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706
              LVFTG + +  R    +     G      +   T  ++  D  +   K   A++ GV
Sbjct: 331 GSTLVFTGDMVE-AREVWWDRAVAAGFRPQEAVRPDTTFVVAADVDSLSLKARAAREYGV 389

Query: 707 KIMNEEQFLFLL 718
            I+  E F  ++
Sbjct: 390 PIIPVEDFRRMV 401


>gi|6746428|gb|AAF27555.1| unknown [Lactococcus lactis]
          Length = 83

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 14/75 (18%)

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIV---------GDNPGSKL---EKAQQLGVK- 707
           + R +AQ  ++ L     + +++KT  ++          G +P  KL   E+A + G   
Sbjct: 1   MTRKQAQAIISGLEGHNQSSVTKKTTRLVTGYFPIDLIKGYSPSQKLTEAEQAIESGQPL 60

Query: 708 -IMNEEQFLFLLQQY 721
            IM+E++F+  L Q+
Sbjct: 61  IIMSEKEFVDFLAQF 75


>gi|225677466|gb|EEH15750.1| S-M checkpoint control protein Rad4p [Paracoccidioides brasiliensis
           Pb03]
          Length = 880

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 621 NICAVEALLKEVS-PSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            + AV +       P++    E+          +  TG      R+  Q  +T+ G    
Sbjct: 80  WVEAVRSSWMLGGDPNLEELEEQYRYPTFAGLSICLTGFEDMNTRNHLQRTITENGGEFR 139

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             L++    +I     G K + A    + +++ +     L++ 
Sbjct: 140 RDLTKSVTHLIARSGCGQKYKYATLWKITVVSLKWLEDSLERG 182


>gi|328873528|gb|EGG21895.1| replication factor C subunit [Dictyostelium fasciculatum]
          Length = 1578

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 19/95 (20%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI--------- 687
               +     +  K    TG L   +R + + +V   G   S  + +K            
Sbjct: 770 KPEPRGAPKCLAKKYFTVTGVLDCFERTEIKGFVQLYGGQFSDNVIKKITHVVVGEGGGE 829

Query: 688 ---IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               I+ D       + ++  + ++ E++FL ++ 
Sbjct: 830 KKKEIIDD-------RLREKSIVVLTEDEFLAMIN 857


>gi|255521960|ref|ZP_05389197.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-175]
          Length = 34

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEY 48
          +K    L   +  +   YY    P + D+EY
Sbjct: 4  KKRYEELINILDQYSYDYYVIDNPTVEDAEY 34


>gi|330956774|gb|EGH57034.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae Cit 7]
          Length = 35

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
              GSKL KA +LG+ +++E+  L  L +    
Sbjct: 1   PGAGSKLTKANELGLTVLDEDALLKRLAELGVA 33


>gi|300175111|emb|CBK20422.2| unnamed protein product [Blastocystis hominis]
          Length = 165

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSK 697
            +     ++    V TG  + +   +  + +   G V    +S KT+ ++ G     G K
Sbjct: 67  PQGKEDCLDGLVFVVTGLSKYLTVQEISDLIFDHGGVERTAVSGKTNYLVAGFEMEDGRK 126

Query: 698 LE 699
           + 
Sbjct: 127 IT 128


>gi|295670675|ref|XP_002795885.1| subunit of DNA polymerase II [Paracoccidioides brasiliensis Pb01]
 gi|226284970|gb|EEH40536.1| subunit of DNA polymerase II [Paracoccidioides brasiliensis Pb01]
          Length = 822

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 621 NICAVEALLKEVS-PSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            + AV +       P++    E+          +  TG      R+  Q  +T+ G    
Sbjct: 53  WVEAVRSSWMLGGDPNLEELEEQYRYPTFAGLSICLTGFEDMNTRNHLQRTITENGGEFR 112

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             L++    +I     G K + A    + +++ +     L++ 
Sbjct: 113 RDLTKSVTHLIARSGCGQKYKYATLWKITVVSLKWLQDSLERG 155


>gi|212529912|ref|XP_002145113.1| BRCT domain protein [Penicillium marneffei ATCC 18224]
 gi|210074511|gb|EEA28598.1| BRCT domain protein [Penicillium marneffei ATCC 18224]
          Length = 822

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 621 NICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            I AV     +   +      +K          +  TG      R   QE     GA   
Sbjct: 80  WIEAVRQSWMDGGDTDLQALEQKYRLPTFHGLSICVTGFEDPSYRTYLQETTIANGAEFR 139

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             L++    +I     G+K + A Q  +K+++ + F   L++ 
Sbjct: 140 KDLTKTVTHLIAQQASGAKYKFATQWSIKVVSAKWFSDSLERG 182


>gi|150376443|ref|YP_001313039.1| TPR repeat-containing protein [Sinorhizobium medicae WSM419]
 gi|150030990|gb|ABR63106.1| Tetratricopeptide TPR_2 repeat protein [Sinorhizobium medicae
           WSM419]
          Length = 361

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ---- 702
           +  +     G L    R  A   V + G  +   ++R+T+ ++ G    S+  +A+    
Sbjct: 3   VAGRTFGIIGALAAFPRRLAAREVERQGGHLRRGVARQTNYVVFGRGLLSRATEAEIEKR 62

Query: 703 ------QLGVKIMNEEQFLFLL 718
                   G ++++E  FL LL
Sbjct: 63  FDGESGAHG-RVLSENGFLRLL 83


>gi|257485000|ref|ZP_05639041.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci
          ATCC 11528]
          Length = 33

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILD 45
          ++     +  L  E+  H+  Y+   +P I D
Sbjct: 1  MKAVETRILELRAELDEHNYRYHVLDEPSIPD 32


>gi|218185404|gb|EEC67831.1| hypothetical protein OsI_35425 [Oryza sativa Indica Group]
          Length = 978

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
              +   +  HE           +  T  L   +R +  + + Q G   SA L+R+   +
Sbjct: 187 QCWIEHRVVPHEPYRIPPFSGLNICIT-KLNVDERRELAKIIVQNGGQYSANLTRRCTHL 245

Query: 689 IVGDNPGSKLEKAQQLG 705
           +   + G K   AQ+ G
Sbjct: 246 VSNISFGDKYVVAQKWG 262


>gi|326437104|gb|EGD82674.1| hypothetical protein PTSG_03335 [Salpingoeca sp. ATCC 50818]
          Length = 1795

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
           +   EK++   ++      +G L + +R   +  V   G   S  L++    ++     G
Sbjct: 223 VEPEEKHLLPMLDGCMFCVSG-LPQDERESVKAVVETHGGSYSRTLNKDCTHLVCSVASG 281

Query: 696 SKLEKAQQLGVKIMNEEQF 714
           SK   A Q G  ++  E  
Sbjct: 282 SKYLHALQWGTHVVTPEWL 300



 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
            +        ++  ++ F+G L    R         LG +V   +SRK + ++  D   S
Sbjct: 590 PQPPPREPHNLKGVRVAFSGFLS-FHRDHLTSMAKHLGMIV--GMSRKCNYVVCADTSAS 646

Query: 697 KLEKA--QQLGVKIMNEEQFLF 716
           +  KA  Q+L   + +EE    
Sbjct: 647 QYGKAVKQKLN-PV-SEEWLFQ 666


>gi|312216702|emb|CBX96652.1| hypothetical protein [Leptosphaeria maculans]
          Length = 845

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 1/100 (1%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
                     V  +    E  +   +   K+  TG      R   QE V   G      L
Sbjct: 88  RQVWMQGHDHVDVAALEQEYRLP-TLFGLKICLTGFDNPEHRRYIQETVDNNGGEYHGDL 146

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           ++    +I     G K + A    +K+++ E F   L++ 
Sbjct: 147 TKAVTHLIAAAPSGKKYDYALNWHMKVVSLEWFEQSLERG 186


>gi|239917363|ref|YP_002956921.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Micrococcus luteus NCTC 2665]
 gi|281414154|ref|ZP_06245896.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus NCTC 2665]
 gi|239838570|gb|ACS30367.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Micrococcus luteus NCTC 2665]
          Length = 381

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
               E          +    +  + +VFTG +  + R  A+      GA  +  +   T 
Sbjct: 254 RWPDEGVNPPPNPAADPGHPLFGQTVVFTGGI-GMSRQSAKTRAAAQGAQTANRVGAATT 312

Query: 687 IIIVGDN 693
           +++VGD 
Sbjct: 313 MLVVGDG 319


>gi|145337666|ref|NP_177856.2| MEI1 (meiosis defective 1); transcription coactivator [Arabidopsis
           thaliana]
 gi|332197842|gb|AEE35963.1| topoisomerase (DNA) II binding protein 1 [Arabidopsis thaliana]
          Length = 972

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           +   +  A  ++  N + I  +  L +  +   +   E           +  T  +   +
Sbjct: 141 IVKNVLAAKYKWALNKKPIVTLNWLHRCWNEHRVVPQEPYKIPPFSGLTICVT-RIPADE 199

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
           R   ++ +++ G   SA L++    +I     G K + A++ G ++I+  + F   + +
Sbjct: 200 RKGMEKVISEYGGSYSAELTKSCTHLIADAAEGDKYKVARKWGHIQIVTRKWFQQSIDK 258


>gi|34481719|emb|CAD54082.1| MEI1 protein [Arabidopsis thaliana]
          Length = 972

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           +   +  A  ++  N + I  +  L +  +   +   E           +  T  +   +
Sbjct: 141 IVKNVLAAKYKWALNKKPIVTLNWLHRCWNEHRVVPQEPYKIPPFSGLTICVT-RIPADE 199

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
           R   ++ +++ G   SA L++    +I     G K + A++ G ++I+  + F   + +
Sbjct: 200 RKGMEKVISEYGGSYSAELTKSCTHLIADAAEGDKYKVARKWGHIQIVTRKWFQQSIDK 258


>gi|227543169|ref|ZP_03973218.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227180978|gb|EEI61950.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 449

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--N 693
               E N    +  + +  TG  + + +      +   GA +   +++KT I  VG    
Sbjct: 345 EPNTEANPDGLLYGQNVTLTGDFEPLDKGTLWSKIADQGATIGKNVTKKTTICAVGAWTK 404

Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLL 718
             SK ++A++L      + I ++E+   +L
Sbjct: 405 KTSKQKRAEELKEQGQDIAIWSKEKLFIVL 434


>gi|227488565|ref|ZP_03918881.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091459|gb|EEI26771.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 449

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--N 693
               E N    +  + +  TG  + + +      +   GA +   +++KT I  VG    
Sbjct: 345 EPNTEANPDGLLYGQNVTLTGDFEPLDKGTLWSKIADQGATIGKNVTKKTTICAVGAWTK 404

Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLL 718
             SK ++A++L      + I ++E+   +L
Sbjct: 405 KTSKQKRAEELKEQGQDIAIWSKEKLFIVL 434


>gi|301623749|ref|XP_002941174.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Xenopus (Silurana)
           tropicalis]
          Length = 988

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 15/113 (13%)

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           +                     + N K++  G L K  + + +  +  LG  V+    + 
Sbjct: 340 ISPPAAPKPAPTVEETVPEGKPLTNAKVLVIGKLSK-NKDEVKALIEGLGGKVTGSAHKA 398

Query: 685 TDIIIVG---DNPGSKLEKAQQLGVKIMNEEQFL----------FLLQQYNTT 724
           T  I      +    K+E  +   V++++ + FL           LL QY  +
Sbjct: 399 TLCISTKKEVEKMSKKMEDVKAANVRVVS-DDFLKEVESGKSVQELLSQYGIS 450


>gi|121714012|ref|XP_001274617.1| subunit of DNA polymerase II [Aspergillus clavatus NRRL 1]
 gi|119402770|gb|EAW13191.1| subunit of DNA polymerase II [Aspergillus clavatus NRRL 1]
          Length = 822

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 2/103 (1%)

Query: 621 NICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            + AV     +   +  R   ++          +  TG      R+  Q+     GA   
Sbjct: 101 WVEAVRQSWMQGEDTDIRALEQQYRLPTFMGLSICITGFEDMAYRNYIQDTAASNGADFR 160

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             L++    +I  +  G K + A Q  +K++  + F   +++ 
Sbjct: 161 KDLTKNVSHLIAWNTEGEKYKFATQWNIKVVTLKWFTDSIERG 203


>gi|115395844|ref|XP_001213561.1| poly polymerase (Poly[ADP-ribose] synthetase) [Aspergillus terreus
           NIH2624]
 gi|114193130|gb|EAU34830.1| poly polymerase (Poly[ADP-ribose] synthetase) [Aspergillus terreus
           NIH2624]
          Length = 653

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 650 KKLVF--TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKLEKAQQ 703
           +  V   +GT    ++ + +  +   GA  S  ++     +I      DN  SK ++A +
Sbjct: 7   QSFVIALSGTFSGYKQAEVRALIESHGAKFSHSVTSDLTHLITTQREIDNKNSKYKQATK 66

Query: 704 -LGVKIMNEEQFLF 716
                I++ +  + 
Sbjct: 67  VYNCNIVSLDWLIE 80


>gi|323453608|gb|EGB09479.1| hypothetical protein AURANDRAFT_63099 [Aureococcus anophagefferens]
          Length = 985

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN--KRRNISLERFIFSLGIRHV 562
           R PAD+F L   +  +  ++E + G+   S   L D++     R + L  F+++LG   V
Sbjct: 847 RSPADLFDLLDDRDAAARRLEALDGWASTSAAKLLDALEARAARPLPLADFVYALGANRV 906

Query: 563 GAEIARSLAKYYLSY 577
           G   A+ +A    ++
Sbjct: 907 GKATAKRVAALAGTW 921


>gi|296809265|ref|XP_002844971.1| WGR domain containing protein [Arthroderma otae CBS 113480]
 gi|238844454|gb|EEQ34116.1| WGR domain containing protein [Arthroderma otae CBS 113480]
          Length = 724

 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII---VGDNPGSKLEKAQ 702
            + ++ +V +G+ +       +  V  LG   SA ++     +I        G+K ++A 
Sbjct: 4   PLVDQVVVVSGSFRDYNHDTIKYIVESLGGSFSAKVNDDCTHLITTKAAHPAGTKNKQAI 63

Query: 703 QLG--VKIMNEEQFLFLLQQYNTTLRIHDD 730
            LG  +KI++    L  L       ++ DD
Sbjct: 64  ALGNDIKIVS----LEWLTDSRDKGQLMDD 89


>gi|312831421|emb|CBY17601.1| unnamed protein product [Escherichia coli LF82]
 gi|323963929|gb|EGB59422.1| hypothetical protein ERJG_04702 [Escherichia coli M863]
 gi|327252326|gb|EGE63998.1| hypothetical protein ECSTEC7V_3178 [Escherichia coli STEC_7v]
          Length = 160

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG  +K  + +  +   + G  V   +++   ++  G N G SK+  A+  G  I++
Sbjct: 86  VCFTG-FKKADKERLVDKANEQGLTVRTSVTQNLQMLCCGYNAGPSKVSAARMKGTIIID 144

Query: 711 EEQFLFLLQQYNT 723
           E  F+  L+    
Sbjct: 145 EPGFIHFLETGEI 157


>gi|323454653|gb|EGB10523.1| hypothetical protein AURANDRAFT_62499 [Aureococcus anophagefferens]
          Length = 1848

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 56/182 (30%), Gaps = 17/182 (9%)

Query: 516  RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
             + T       +             ++      + E    +LG+  + AE AR  +  Y 
Sbjct: 1043 WEATGLDLDAQLAETMRRPGDYDLAAMEA---QAAELRTKALGLAFLAAE-ARGRSGLYN 1098

Query: 576  SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
              Q        ++A         +      + +      F          + + +     
Sbjct: 1099 DEQRTHAPDVEVLARRAAAGTLSLA-----EAVVAGSGAFAHASAFRKLADEVWRHGG-- 1151

Query: 636  IGRHEKNVSSEIENKKLVFTGTLQKIQRHK------AQEYVTQLGAVVSAILSRKTDIII 689
              R  +   + +   K+ FTG  + I R++       +E   + G +    ++  T +++
Sbjct: 1152 GARSIEAAENCLAGHKVCFTGVFETIGRNRPDTQGHIRELTARFGGICRDGVTSSTTVLV 1211

Query: 690  VG 691
            VG
Sbjct: 1212 VG 1213


>gi|156378154|ref|XP_001631009.1| predicted protein [Nematostella vectensis]
 gi|156218041|gb|EDO38946.1| predicted protein [Nematostella vectensis]
          Length = 1428

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT-DIIIVGDNPGSKLEKAQQLG 705
            +   +  TG L    R + ++   Q G V S  L+  T   ++V    G K E A++  
Sbjct: 148 FKGCTICVTG-LDAQTRQEVKQLCNQNGGVYSGELNMNTCTHLLVNQPKGEKYEFARKWN 206

Query: 706 VKIMNEEQFLFLLQQY 721
           +  ++ + F   ++  
Sbjct: 207 IHCVSTQWFYDCIRNG 222


>gi|238855548|ref|ZP_04645851.1| DNA polymerase III [Lactobacillus jensenii 269-3]
 gi|260665137|ref|ZP_05865987.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
 gi|282932326|ref|ZP_06337761.1| DNA polymerase III [Lactobacillus jensenii 208-1]
 gi|238831832|gb|EEQ24166.1| DNA polymerase III [Lactobacillus jensenii 269-3]
 gi|260561191|gb|EEX27165.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
 gi|281303547|gb|EFA95714.1| DNA polymerase III [Lactobacillus jensenii 208-1]
          Length = 316

 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 14/106 (13%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
              ++  I        +  +NK +VF+G++      +     T +G  V   +   T+ +
Sbjct: 215 NCILTEKIPFEYLIKRNPFKNKNIVFSGSIN----EELPVIATNMGGCVKTHVDSMTNYL 270

Query: 689 IVGDN-----PGSKLEKAQQL-----GVKIMNEEQFLFLLQQYNTT 724
           ++G+         +L+KA+ L      +  ++E  FL +L  +  +
Sbjct: 271 VMGNQDFFSTSNPELQKARSLIAEGNKISRISESFFLDMLDSWARS 316


>gi|224060837|ref|XP_002197792.1| PREDICTED: epithelial cell transforming sequence 2 oncogene
           [Taeniopygia guttata]
          Length = 882

 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 22/208 (10%)

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   +       +  +       E    L +     +   + +  I       ++    +
Sbjct: 27  IETSKENVFRATVLDVEEEMPQIETRVVLVQEAGKREELLKALEEIKT----PYIKTDSI 82

Query: 602 PLVGDIIAQ-----AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-------- 648
             +GD  +       +V  +Q P      +A  + + P +  H       +         
Sbjct: 83  EELGDSDSPEFETIFVVSDFQAPVFSNLCKADCRVIGPPVLLHCAQKGEPLPFSCRPLYC 142

Query: 649 ----NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
               N  L FTG  +K +  K    V  +G ++    S K   ++     G K   A  L
Sbjct: 143 ASMLNLVLCFTGFRKKDELVKLVTLVHHMGGIIRRDFSSKVTHLVANSTHGDKFRIAVSL 202

Query: 705 GVKIMNEEQFLFLLQQYN-TTLRIHDDD 731
           G+ I+  E      ++ N       DDD
Sbjct: 203 GIPIVKAEWIYKAWEKRNEIDFCPADDD 230


>gi|207111561|ref|ZP_03245723.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 45

 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 208 VGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
                +ANPRNAASG LR+L+      R L F   G+GK S  F
Sbjct: 1   ANEPLFANPRNAASGSLRQLDSNITKKRKLQFIPWGVGKHSLNF 44


>gi|71019605|ref|XP_760033.1| hypothetical protein UM03886.1 [Ustilago maydis 521]
 gi|46099826|gb|EAK85059.1| hypothetical protein UM03886.1 [Ustilago maydis 521]
          Length = 919

 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           +E ++  +  +G  +   R    + +  +GA  S  LS +T I +  +    K +KA++ 
Sbjct: 389 AEFKDATITISG-YRGTTRQYLTKMIKLMGATFSGALSARTSICVAANLDSEKTQKAKEW 447

Query: 705 GVKIMN 710
            V I+N
Sbjct: 448 KVPIVN 453


>gi|290998587|ref|XP_002681862.1| topoisomerase II-binding protein 1 [Naegleria gruberi]
 gi|284095487|gb|EFC49118.1| topoisomerase II-binding protein 1 [Naegleria gruberi]
          Length = 628

 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQL 704
            ENKK+  TG  +  +R      + Q GA+ +  L+++ D +IV   D    K+EKA+  
Sbjct: 311 FENKKISITG-FEGAERSDMIYLIKQTGAIYTGDLNKQNDFLIVKSFDLVSKKIEKAKTW 369

Query: 705 GVKIMNEE 712
            + I++ +
Sbjct: 370 ELTILSPD 377


>gi|115871967|ref|XP_785636.2| PREDICTED: similar to PAXIP1 protein [Strongylocentrotus
           purpuratus]
          Length = 627

 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
               +++ +  TG  +  +R+  +  +   GA  +   SR   ++I     G+K EKAQ+
Sbjct: 347 PPPCKDQIIAVTG-FEGGERNDVKTMIEMTGAKYTGFFSRGNTLLICKRLEGAKYEKAQE 405

Query: 704 LGVKI 708
               +
Sbjct: 406 WRTPV 410


>gi|323467153|gb|ADX70840.1| DNA polymerase III [Lactobacillus helveticus H10]
          Length = 317

 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 54/129 (41%), Gaps = 17/129 (13%)

Query: 612 IVEFYQNPRNICAVEALLKEV------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +   +        +E  + ++         +  ++    + +++K +V +G L  + +  
Sbjct: 190 VYNDFNQHFTEDLLEQAIGKIKNVDLTGDEVDYYQLGFRNPVQDKNIVLSGNL-HMDQRD 248

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD-NPGSK----LEKAQQL-----GVKIMNEEQFL 715
           A++ +  +   +   +   T+ +I+GD +   K    L +A+ L      +K ++E  FL
Sbjct: 249 AEKMINNMSGQLDQNVENTTNYLIMGDHDFFRKNNEDLNRARLLIKDGAKIKRLSESFFL 308

Query: 716 FLLQQYNTT 724
            +L  +  +
Sbjct: 309 SMLDDWARS 317


>gi|222641663|gb|EEE69795.1| hypothetical protein OsJ_29518 [Oryza sativa Japonica Group]
          Length = 558

 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 11/74 (14%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------- 693
                   +  TG L K  R + +E   ++G   S  L  K   ++V  +          
Sbjct: 51  DGPFAGLVICVTG-LSKEARTQVKEATERMGGEYSGSLHPKCTHLVVQISLQRSWIMHSF 109

Query: 694 PGSKLEKAQQLGVK 707
            G K E A + G K
Sbjct: 110 AGRKFEHAVKHGAK 123


>gi|218202217|gb|EEC84644.1| hypothetical protein OsI_31525 [Oryza sativa Indica Group]
          Length = 558

 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 11/74 (14%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------- 693
                   +  TG L K  R + +E   ++G   S  L  K   ++V  +          
Sbjct: 51  DGPFAGLVICVTG-LSKEARTQVKEATERMGGEYSGSLHPKCTHLVVQISLQRSWIMHSF 109

Query: 694 PGSKLEKAQQLGVK 707
            G K E A + G K
Sbjct: 110 AGRKFEHAVKHGAK 123


>gi|303281526|ref|XP_003060055.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458710|gb|EEH56007.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 126

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 650 KKLVFTGTLQK---IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPGSKLE 699
            K+  TG L +   ++R + +  V   G V SA LS KTD+++ G+   G K E
Sbjct: 31  LKVAVTGILAEPRPMKRDQFKAAVEAAGGVYSAALSGKTDVLVCGEPKTGKKEE 84


>gi|255953313|ref|XP_002567409.1| Pc21g03450 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589120|emb|CAP95242.1| Pc21g03450 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 840

 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 620 RNICAVEALLKEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +   +EA+    +       + +      + +   K+  TG      R   Q+   + G
Sbjct: 93  MDPEWIEAVRHSWTQGEDIDIQALEKQFRLATLHGLKICITGFSDLPFRAYMQKTTEENG 152

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           A     L++    +I  ++ G K + A Q  +K+++ + F   +++ 
Sbjct: 153 AEYRKDLTKTVTHLIARNSDGEKYKFATQWNIKVVSVKWFTDSIERG 199


>gi|156040828|ref|XP_001587400.1| hypothetical protein SS1G_11392 [Sclerotinia sclerotiorum 1980]
 gi|154695776|gb|EDN95514.1| hypothetical protein SS1G_11392 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 792

 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 56/161 (34%), Gaps = 7/161 (4%)

Query: 564 AEIARSLAKYYLSYQNFAQEI-NNIIAHNNDDWLS--LIRVPLVGDIIAQAIVEFYQNPR 620
            + A  +A+      N   ++   +       W S            I    +++    R
Sbjct: 34  EKRAELIAQAEQMGANVRADLTVEVTHLVVGHWDSPKYHYAARFRPDIRPMTMDWIATVR 93

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           N+   +  +           ++    + + ++  TG     +R    E +   G      
Sbjct: 94  NLWVNDHDIDM----DLLERQHTLPTLTSLRISLTGCDDTAERQDIAEKIKANGGEYDGN 149

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           L+++   +I     G+K + A+  G++I++ E  L  L++ 
Sbjct: 150 LTKQITHLISFRTEGNKYKAAKSWGLRIVSAEWLLDSLERG 190


>gi|83772922|dbj|BAE63050.1| unnamed protein product [Aspergillus oryzae]
          Length = 816

 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 2/103 (1%)

Query: 621 NICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            + AV     +   +  R   E+          +  TG      R+  Q+     GA   
Sbjct: 80  WVEAVRQSWMQGEDTDVRGLEEQYKFPTFAGLCICITGFEDMAFRNYIQDTAIVHGAEFR 139

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             L+++   ++  D    K + A Q  +K++  + F   +++ 
Sbjct: 140 KDLTKQVTHLVARDTESQKYKFATQWNIKVVTVKWFTDSIERG 182


>gi|309364838|emb|CAP24374.2| CBR-PIS-1 protein [Caenorhabditis briggsae AF16]
          Length = 1052

 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K    +G   + +R      V  +GA ++   SRK D++I   +P  K+ KAQ+  V +
Sbjct: 621 GKLFALSG-YDESERGAISFMVEAMGAKITPFFSRKNDLLIA-KSPSEKVTKAQEWKVPV 678

Query: 709 MN 710
           +N
Sbjct: 679 VN 680


>gi|268537308|ref|XP_002633790.1| C. briggsae CBR-PIS-1 protein [Caenorhabditis briggsae]
          Length = 1056

 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K    +G   + +R      V  +GA ++   SRK D++I   +P  K+ KAQ+  V +
Sbjct: 625 GKLFALSG-YDESERGAISFMVEAMGAKITPFFSRKNDLLIA-KSPSEKVTKAQEWKVPV 682

Query: 709 MN 710
           +N
Sbjct: 683 VN 684


>gi|317150638|ref|XP_001824183.2| subunit of DNA polymerase II [Aspergillus oryzae RIB40]
          Length = 777

 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 2/103 (1%)

Query: 621 NICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            + AV     +   +  R   E+          +  TG      R+  Q+     GA   
Sbjct: 80  WVEAVRQSWMQGEDTDVRGLEEQYKFPTFAGLCICITGFEDMAFRNYIQDTAIVHGAEFR 139

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             L+++   ++  D    K + A Q  +K++  + F   +++ 
Sbjct: 140 KDLTKQVTHLVARDTESQKYKFATQWNIKVVTVKWFTDSIERG 182


>gi|328953949|ref|YP_004371283.1| Bifunctional protein folD [Desulfobacca acetoxidans DSM 11109]
 gi|328454273|gb|AEB10102.1| Bifunctional protein folD [Desulfobacca acetoxidans DSM 11109]
          Length = 299

 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 22/84 (26%)

Query: 663 RHKAQEYVTQLGAV---VSAILSRKTDIIIVGDNPGS------KLEKAQQLGV------- 706
           R + ++ V  L A    V  +++     I+VG++PGS      K + A +LG        
Sbjct: 16  REELKQEVADLKAKHNIVPGLVT-----ILVGEDPGSVSYVTAKQKTAHELGFYSVQDSQ 70

Query: 707 -KIMNEEQFLFLLQQYNTTLRIHD 729
              ++E   L L+ +YN   ++H 
Sbjct: 71  PPTISEADLLALIDKYNKDPKLHG 94


>gi|242761867|ref|XP_002340264.1| BRCT domain protein [Talaromyces stipitatus ATCC 10500]
 gi|218723460|gb|EED22877.1| BRCT domain protein [Talaromyces stipitatus ATCC 10500]
          Length = 826

 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 2/103 (1%)

Query: 621 NICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            I AV     +   +      +K          +  TG      R+  QE     GA   
Sbjct: 80  WIEAVRQSWMDGGDTDLHALEQKYRLPTFYGLSICVTGFEDASYRNYLQETTIANGAEFR 139

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             L++    +I     G K + A Q  +K++  + F   L++ 
Sbjct: 140 KDLTKTVTHLIAHQPSGQKYKFATQWQIKVVTAKWFSDSLERG 182


>gi|262197295|ref|YP_003268504.1| hypothetical protein Hoch_4113 [Haliangium ochraceum DSM 14365]
 gi|262080642|gb|ACY16611.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 233

 Score = 45.8 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 14/87 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNP-GSK 697
            E +  V TG      R   +  +   G +V   ++++TD+++VG         +P G K
Sbjct: 141 FEGRVYVLTGQFAFGSREHCEHAIFARGGLVRQRITQQTDVLVVGTFGSRDWVQSPYGRK 200

Query: 698 LEKA---QQLGVK--IMNEEQFLFLLQ 719
           +EKA   +  G    I++E  +   L+
Sbjct: 201 IEKAIAYRDAGQPLAIVSEAHWCAALR 227


>gi|218672221|ref|ZP_03521890.1| hypothetical protein RetlG_11537 [Rhizobium etli GR56]
          Length = 96

 Score = 45.8 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 15/86 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697
            E +   FTGT    QR   +  VT+ GA  +  L+++T+++++G          + G+K
Sbjct: 12  FEGRTYCFTGTFNYGQRKHCEAAVTERGA-SAGSLTQRTNVLVIGMYATDSWKHSSFGNK 70

Query: 698 LEKAQQLG-----VKIMNEEQFLFLL 718
           +  A +       + I++EE ++  L
Sbjct: 71  IMNAVEYRLKGFPISIVSEEHWVRHL 96


>gi|119478330|ref|XP_001259347.1| BRCT domain protein [Neosartorya fischeri NRRL 181]
 gi|119407501|gb|EAW17450.1| BRCT domain protein [Neosartorya fischeri NRRL 181]
          Length = 752

 Score = 45.8 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 2/103 (1%)

Query: 621 NICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            + AV     +   +  R   ++          +  TG      R+  Q+     GA   
Sbjct: 80  WVEAVRQSWMQGEDTDIRALEQQYRLPTFMGLAICITGFEDMAYRNYIQDTAVAHGADFR 139

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             L++    +I  +  G K + A Q  +K++  + F   +++ 
Sbjct: 140 KDLTKSVTHLIARNTEGQKYKFATQWNIKVVTMKWFTDSIERG 182


>gi|79517236|ref|NP_197639.2| NAD+ ADP-ribosyltransferase [Arabidopsis thaliana]
 gi|332005648|gb|AED93031.1| NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferase
           [Arabidopsis thaliana]
          Length = 814

 Score = 45.8 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII--VGDNP 694
            R   +         +   G L +      ++ + + G  VS  +   T +++       
Sbjct: 177 KRELGSADKPFVGMMISLMGRLTR-THQYWKKKIERNGGKVSNTVQGVTCLVVSPAERER 235

Query: 695 G--SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           G  SK+ +A + G+ +++E   +  ++++  
Sbjct: 236 GGTSKMVEAMEQGLPVVSEAWLIDSVEKHEA 266


>gi|75171204|sp|Q9FK91|PARP3_ARATH RecName: Full=Poly [ADP-ribose] polymerase 3; Short=PARP-3;
           AltName: Full=NAD(+) ADP-ribosyltransferase 3;
           Short=ADPRT-3; AltName: Full=Poly[ADP-ribose] synthase 3
 gi|9758653|dbj|BAB09119.1| seed maturation protein PM38 protein [Arabidopsis thaliana]
          Length = 815

 Score = 45.8 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII--VGDNP 694
            R   +         +   G L +      ++ + + G  VS  +   T +++       
Sbjct: 178 KRELGSADKPFVGMMISLMGRLTR-THQYWKKKIERNGGKVSNTVQGVTCLVVSPAERER 236

Query: 695 G--SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           G  SK+ +A + G+ +++E   +  ++++  
Sbjct: 237 GGTSKMVEAMEQGLPVVSEAWLIDSVEKHEA 267


>gi|1709741|sp|Q11208|PARP_SARPE RecName: Full=Poly [ADP-ribose] polymerase; Short=PARP; AltName:
           Full=NAD(+) ADP-ribosyltransferase; Short=ADPRT;
           AltName: Full=Poly[ADP-ribose] synthase
 gi|538248|dbj|BAA03943.1| poly(ADP-ribose) polymerase [Sarcophaga peregrina]
          Length = 996

 Score = 45.8 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKLEKAQQLGVKIMNEEQF 714
            K +    ++ +++LG  VS  ++ KT +++      +   S+++KA+ LG+ ++ E+ +
Sbjct: 397 PKEREGIVKDRISKLGGTVSTKITEKTTVVLSTPEEVERMSSRMKKAKTLGLHVIPED-Y 455

Query: 715 LFLLQQYNT 723
           L  ++Q   
Sbjct: 456 LEAVEQNGA 464


>gi|254292978|ref|YP_003059001.1| hypothetical protein Hbal_0602 [Hirschia baltica ATCC 49814]
 gi|254041509|gb|ACT58304.1| hypothetical protein Hbal_0602 [Hirschia baltica ATCC 49814]
          Length = 129

 Score = 45.8 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 665 KAQEYVT----QLGAVVSAILSRKTDIIIVGD-NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +E +      LG +V   L++K D ++ G   P SK+  A++ GV+I+ E +F    +
Sbjct: 62  ELKEKLGDEAFALGFLVDNGLTKKLDFMVCGPTAPASKIRAAEKFGVEILMEFEFKEFQE 121

Query: 720 QYNTTLR 726
                +R
Sbjct: 122 TGELPIR 128


>gi|260461743|ref|ZP_05809989.1| superfamily I DNA/RNA helicase [Mesorhizobium opportunistum
           WSM2075]
 gi|259032384|gb|EEW33649.1| superfamily I DNA/RNA helicase [Mesorhizobium opportunistum
           WSM2075]
          Length = 84

 Score = 45.8 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKAQ 702
            V TG      R    E + + G      +  +TD ++V             G+K+ +A 
Sbjct: 2   FVLTGKFAIGPRKVIAEMICERGGDWKETVCGQTDYLVVAAEASRDWKHSHEGTKIIRAM 61

Query: 703 QL 704
           +L
Sbjct: 62  EL 63


>gi|242044802|ref|XP_002460272.1| hypothetical protein SORBIDRAFT_02g025780 [Sorghum bicolor]
 gi|241923649|gb|EER96793.1| hypothetical protein SORBIDRAFT_02g025780 [Sorghum bicolor]
          Length = 528

 Score = 45.8 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 11/72 (15%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------- 693
                   +  TG L K  R + +E   +LG   S  L  K   ++V  +          
Sbjct: 64  DGPFAGLVICVTG-LSKEARVQVKEATERLGGEYSGSLHPKCTHLVVQISFARHDRRHSF 122

Query: 694 PGSKLEKAQQLG 705
            G K E A + G
Sbjct: 123 AGRKFEHALKHG 134


>gi|146324199|ref|XP_753316.2| BRCT domain protein [Aspergillus fumigatus Af293]
 gi|129558019|gb|EAL91278.2| BRCT domain protein [Aspergillus fumigatus Af293]
          Length = 786

 Score = 45.8 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 2/103 (1%)

Query: 621 NICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            + AV     +   +  R   ++          +  TG      R+  Q+     GA   
Sbjct: 94  WVEAVRQSWMQGEDTDIRALEQQYRLPTFMGLAICITGFEDMAYRNYIQDTAIAHGADFR 153

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             L++    +I  +  G K + A Q  +K++  + F   +++ 
Sbjct: 154 KDLTKSVTHLIARNTEGQKYKFATQWNIKVVTMKWFTDSIERG 196


>gi|159126959|gb|EDP52075.1| BRCT domain protein [Aspergillus fumigatus A1163]
          Length = 666

 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 2/103 (1%)

Query: 621 NICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            + AV     +   +  R   ++          +  TG      R+  Q+     GA   
Sbjct: 80  WVEAVRQSWMQGEDTDIRALEQQYRLPTFMGLAICITGFEDMAYRNYIQDTAIAHGADFR 139

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             L++    +I  +  G K + A Q  +K++  + F   +++ 
Sbjct: 140 KDLTKSVTHLIARNTEGQKYKFATQWNIKVVTMKWFTDSIERG 182


>gi|323946252|gb|EGB42285.1| hypothetical protein EREG_02161 [Escherichia coli H120]
          Length = 160

 Score = 45.4 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG  +K  + +  +   + G  V   +++   ++  G N G SK+  A+  G  I++
Sbjct: 86  VCFTG-FKKADKERLVDKANEQGLTVRTSVTQSLQMLCCGYNAGPSKVSAARMKGTIIID 144

Query: 711 EEQFLFLLQQYNT 723
           E  F+  L+    
Sbjct: 145 EPGFIHFLETGEI 157


>gi|315615321|gb|EFU95956.1| hypothetical protein EC3431_4574 [Escherichia coli 3431]
          Length = 160

 Score = 45.4 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG  +K  + +  +   + G  V   +++   ++  G N G SK+  A+  G  I++
Sbjct: 86  VCFTG-FKKADKERLVDKANEQGLTVRTSVTQSLQMLCCGYNAGPSKVSAARMKGTIIID 144

Query: 711 EEQFLFLLQQYNT 723
           E  F+  L+    
Sbjct: 145 EPGFIHFLETGEI 157


>gi|218559540|ref|YP_002392453.1| hypothetical protein ECS88_2808 [Escherichia coli S88]
 gi|218690738|ref|YP_002398950.1| hypothetical protein ECED1_3061 [Escherichia coli ED1a]
 gi|218366309|emb|CAR04060.1| conserved hypothetical protein [Escherichia coli S88]
 gi|218428302|emb|CAR09079.1| conserved hypothetical protein [Escherichia coli ED1a]
          Length = 160

 Score = 45.4 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG  +K  + +  +   + G  V   +++   ++  G N G SK+  A+  G  I++
Sbjct: 86  VCFTG-FKKADKERLVDKANEQGLTVRTSVTQSLQMLCCGYNAGPSKVSAARMKGTIIID 144

Query: 711 EEQFLFLLQQYNT 723
           E  F+  L+    
Sbjct: 145 EPGFIHFLETGEI 157


>gi|130782|sp|P11103|PARP1_MOUSE RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
           AltName: Full=NAD(+) ADP-ribosyltransferase 1;
           Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase
           1; Short=msPARP
 gi|49894|emb|CAA32421.1| unnamed protein product [Mus musculus]
          Length = 1013

 Score = 45.4 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691
           +P+           + N K++  G L +  + +A+  + +LG  ++   ++ +  I +  
Sbjct: 376 APTAVNSSAPADKPLSNMKILTLGKLSQ-NKDEAKAVIEKLGGKLTGSANKASLCISIKK 434

Query: 692 --DNPGSKLEKAQQLGVKIMNEEQFLF 716
             +    K+E+ ++  +++++E+ FL 
Sbjct: 435 EVEKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|328783028|ref|XP_395070.3| PREDICTED: hypothetical protein LOC411600 [Apis mellifera]
          Length = 1375

 Score = 45.4 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 613  VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
              +  +      V  L    +                + +  +G  +  +R K +  +  
Sbjct: 979  AHWLSDVVTKQQV--LPPWHALHFPTPFSLTELPCAKQIVSLSG-FEGEERAKVKYMLEA 1035

Query: 673  LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            LGA V+   +R   +++     G K +KA++    ++N +    LL
Sbjct: 1036 LGAKVTNYFTRHNTLLVCRRPDGQKYKKAREWQTGVVNAQWLTDLL 1081


>gi|315446079|ref|YP_004078958.1| hypothetical protein Mspyr1_45720 [Mycobacterium sp. Spyr1]
 gi|315264382|gb|ADU01124.1| hypothetical protein Mspyr1_45720 [Mycobacterium sp. Spyr1]
          Length = 781

 Score = 45.4 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 649 NKKLVFTGTLQKIQ-----RHKAQEYVTQLGAVVSAILSR-KTDIII---VGDNPGSKLE 699
             ++ FTGT Q        R + +   T  G V    +++ + D+++    G   G K  
Sbjct: 701 GARICFTGTAQDPDGRVVERDEMERLATAAGLVPVKSVTKTRCDVLVTAEAGTQSG-KAR 759

Query: 700 KAQQLGVKIMNEEQFLFLLQQY 721
           KA +    ++  + F   L  +
Sbjct: 760 KALEYDKPVLCADDFFTWLAAH 781


>gi|316976507|gb|EFV59792.1| ATPase, AAA family [Trichinella spiralis]
          Length = 774

 Score = 45.4 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 16/43 (37%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
              K   +  +    V +G L+ + R   +  + + G  V+  
Sbjct: 154 EIPKGAENCFQGLTFVLSGILETVDREDVKLLIQKYGGRVTGA 196


>gi|289614698|emb|CBI58535.1| unnamed protein product [Sordaria macrospora]
          Length = 1016

 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 597 SLIRVPLVGDIIAQAIVEFY---QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK-- 651
               V  +     +AI + +    +   I   +    +   + G     V   IE ++  
Sbjct: 85  ERPDVKAMAAGWIEAIRKLWVEDADIDFIALEKEWEMKPFETGGGEPNLVDGTIEPRRKL 144

Query: 652 -LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +  TG ++  +R    + V + G   +  L+R+   ++V    G K + A   G++ + 
Sbjct: 145 LICSTGFMEAEERQHIIDMVEKGGGTYTGDLTRRVTHLVVCKPEGRKYQAAHNWGIRTVT 204


>gi|302658328|ref|XP_003020869.1| poly(ADP)-ribose polymerase PARP, putative [Trichophyton verrucosum
           HKI 0517]
 gi|291184737|gb|EFE40251.1| poly(ADP)-ribose polymerase PARP, putative [Trichophyton verrucosum
           HKI 0517]
          Length = 752

 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
           +S  +  + +V +G+ +       +  V QLG   SA ++     ++         ++A 
Sbjct: 1   MSKPLAGQVVVVSGSFRAYNHETIKYIVEQLGGTFSATVTDACTHLVTSKAAHPADQQAI 60

Query: 703 QLG--VKIMNEEQF 714
            LG  +KI++ +  
Sbjct: 61  ALGNDIKIVSLDWL 74


>gi|25010472|ref|NP_734867.1| hypothetical protein gbs0399 [Streptococcus agalactiae NEM316]
 gi|25010784|ref|NP_735179.1| hypothetical protein gbs0729 [Streptococcus agalactiae NEM316]
 gi|25011033|ref|NP_735428.1| hypothetical protein gbs0980 [Streptococcus agalactiae NEM316]
 gi|23094825|emb|CAD46043.1| Unknown [Streptococcus agalactiae NEM316]
 gi|23095138|emb|CAD46373.1| unknown [Streptococcus agalactiae NEM316]
 gi|23095433|emb|CAD46639.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 77

 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 14/73 (19%)

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GV 706
           + R +   ++   GA+V   +S +T+I++ G         D    K E A         +
Sbjct: 1   MTRREVIVFLENQGAIVQGYVSSQTEILLAGHKQLDLFEPDKRSRKYEAALSRIATGQAI 60

Query: 707 KIMNEEQFLFLLQ 719
            I++EE F  L++
Sbjct: 61  TILSEEAFFNLVK 73


>gi|75213086|sp|Q9SWB4|PARP3_SOYBN RecName: Full=Poly [ADP-ribose] polymerase 3; Short=PARP-3;
           AltName: Full=NAD(+) ADP-ribosyltransferase 3;
           Short=ADPRT-3; AltName: Full=Poly[ADP-ribose] synthase 3
 gi|5802246|gb|AAD51626.1|AF169023_1 seed maturation protein PM38 [Glycine max]
          Length = 815

 Score = 45.0 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSK 697
                    +   G L +   H  +  + + G  V+  +   T  ++           SK
Sbjct: 183 AEKPFTGMMISLMGRLTR-THHYWKTTIEKHGGKVANSIIGST-CLVASPAERERGGTSK 240

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQ 720
           L +A +  + ++ E   +  +++
Sbjct: 241 LAEAMERSIPVVREAWLIDSIEK 263


>gi|126463959|ref|YP_001045072.1| superfamily I DNA/RNA helicase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105770|gb|ABN78300.1| Superfamily I DNA and RNA helicases and helicase subunits-like
            protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 2123

 Score = 45.0 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 627  ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
            A +  V+          S     K  V TG +    R    E + + GAV+   ++ +TD
Sbjct: 2013 ANIGGVTAPTDPIVDPGSLAFTGKSYVLTGKISIGPRSFIGEELARRGAVLDPRVTERTD 2072

Query: 687  IIIVGDNP---------GSKLEKAQQ 703
             I+V             G+K+E A++
Sbjct: 2073 FIVVSTTASRHWKTTHFGTKIEAARE 2098


>gi|321464644|gb|EFX75651.1| hypothetical protein DAPPUDRAFT_55885 [Daphnia pulex]
          Length = 1004

 Score = 45.0 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           V+    + +      +E  K +    L+K  + K +  + +L   V + ++ K   +I  
Sbjct: 372 VNVKKEKSDSKRPPTLEGLKFIVDSKLEK-SKEKVEAEIKKLLGSVGSRVTEKIAAVIST 430

Query: 692 DN----PGSKLEKAQQLGVKIMN 710
            +      SKL+KA +LG+ +++
Sbjct: 431 KDNLKEKDSKLKKASELGIHVVD 453


>gi|332561200|ref|ZP_08415518.1| superfamily I DNA/RNA helicase [Rhodobacter sphaeroides WS8N]
 gi|332274998|gb|EGJ20314.1| superfamily I DNA/RNA helicase [Rhodobacter sphaeroides WS8N]
          Length = 2123

 Score = 45.0 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 627  ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
            A +  V+          S     K  V TG +    R    E + + GAV+   ++ +TD
Sbjct: 2013 ANIGGVTAPTDPIVDPGSLAFTGKSYVLTGKISIGPRSFIGEELARRGAVLDPRVTERTD 2072

Query: 687  IIIVGDNP---------GSKLEKAQQ 703
             I+V             G+K+E A++
Sbjct: 2073 FIVVSTTASRHWKTTHFGTKIEAARE 2098


>gi|46111691|ref|XP_382903.1| hypothetical protein FG02727.1 [Gibberella zeae PH-1]
          Length = 866

 Score = 45.0 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 17/98 (17%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           + P+I        +E ++  +  TG     QR +  + +T  G V +  L++K   +IV 
Sbjct: 132 IDPTIQLQPGEGEAEQKSLCICLTGF--GDQRGEIAKKITSNGGVFTGDLTKKCTHLIVH 189

Query: 692 DNPGSKLEKAQQLGV---------------KIMNEEQF 714
              G K   A+   +                I++E +F
Sbjct: 190 KPEGRKYAAARSWNIYPVTLAWLDQSIARGMILDESKF 227


>gi|145345966|ref|XP_001417469.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577696|gb|ABO95762.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 825

 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS-AILSRKTDIIIVGDNPGSKLEKAQQL 704
                 +  TG +    R + +  V Q G   S  ++  K   +I     G K + A + 
Sbjct: 87  PFLGCVVSITGFMDLTHRERLKLEVEQNGGTFSPDLVQGKCTHLIALKPEGGKYKSALKW 146

Query: 705 GVKIMNEEQF 714
           G++I++++  
Sbjct: 147 GIRIVSQKWL 156


>gi|313224695|emb|CBY20486.1| unnamed protein product [Oikopleura dioica]
          Length = 1288

 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           + +K + FT  + K  R   Q+ V ++   + + +++  DI++VG+    K   A +LG+
Sbjct: 109 LRSKNVCFT-NVPKEDREALQKKVARMAGYICSTMTQDVDILVVGEASSKKYIVASELGI 167

Query: 707 KIMN 710
           K + 
Sbjct: 168 KTVT 171



 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
                +  T  + +  R    + V   G   +  L R     ++ G   G K++ A+  G
Sbjct: 208 FHGLGISVT-NIDQESRTAIADLVVANGGSYNGTLDRNSVTHLVAGGLGGKKIKHARSWG 266

Query: 706 VKIMN 710
           ++I+ 
Sbjct: 267 IEIVT 271



 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
               E  +N  +I ++E        +   +    S          T   Q+ ++  A++ 
Sbjct: 583 CFYFEGLENATDIESIEER-----ENTKVYWCASSRLFSGAGFC-TAKYQENEKKLARQA 636

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               G   SA + R    +I  D  G K  KA    +  +  +  +  L++
Sbjct: 637 AEAGGGKFSASMDRDVTHVIAPDWSGPKQAKAISARLPCITVDWIITCLEK 687


>gi|313241477|emb|CBY33728.1| unnamed protein product [Oikopleura dioica]
          Length = 1304

 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           + +K + FT  + K  R   Q+ V ++   + + +++  DI++VG+    K   A +LG+
Sbjct: 109 LRSKNVCFT-NVPKEDREALQKKVARMAGYICSTMTQDVDILVVGEASSKKYIVASELGI 167

Query: 707 KIMN 710
           K + 
Sbjct: 168 KTVT 171



 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
                +  T  + +  R    + V   G   +  L R     ++ G   G K++ A+  G
Sbjct: 208 FHGLGISVT-NIDQESRTAIADLVVANGGSYNGTLDRNSVTHLVAGGLGGKKIKHARSWG 266

Query: 706 VKIMN 710
           ++I+ 
Sbjct: 267 IEIVT 271



 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
               E  +N  +I ++E        +   +    S          T   Q+ ++  A++ 
Sbjct: 599 CFYFEGLENATDIESIEER-----ENTKVYWCASSRLFSGAGFC-TAKYQENEKKLARQA 652

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               G   SA + R    +I  D  G K  KA    +  +  +  +  L++
Sbjct: 653 AEAGGGKFSASMDRDVTHVIAPDWSGPKQAKAISARLPCITVDWIVTCLEK 703


>gi|281206665|gb|EFA80851.1| putative tfiif-interacting component of the c-terminal domain
           phosphatase [Polysphondylium pallidum PN500]
          Length = 881

 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 647 IENKKLVFTGT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
           +    LVF+G     L    R   +    +LGA V   ++  T  ++      SK+ KA 
Sbjct: 589 LNGVNLVFSGVYPLQLPAH-RQPLRLLAEELGATVQNDITNTTTHVVAARKGTSKVHKAI 647

Query: 703 QLGVKIMN 710
             G+KI+N
Sbjct: 648 SKGLKIVN 655


>gi|301782649|ref|XP_002926747.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Ailuropoda
           melanoleuca]
          Length = 1018

 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 41/92 (44%), Gaps = 12/92 (13%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+           + + K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 377 APAAVNSSTPPDKPLSSMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 435

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           ++    +    K+E+ ++ G+++++E+    L
Sbjct: 436 EV----EKMSKKMEEVREAGIRVVSEDFLRDL 463


>gi|302141765|emb|CBI18968.3| unnamed protein product [Vitis vinifera]
          Length = 952

 Score = 45.0 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
                   +   E           +  T  +   +R + +  + Q G   SA L+R    
Sbjct: 169 HQCWTEHRVVPQESYRVLPFSGLTICVT-KIPADERKEMEILIKQNGGKYSADLTRNCTH 227

Query: 688 IIVGDNP--GSKLEKAQQLG-VKIMNEEQF 714
           +I   +   G K + A++ G + I+  + F
Sbjct: 228 LITDISSPEGDKYKVARRWGHIHIVTRKWF 257


>gi|225459661|ref|XP_002284611.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 986

 Score = 45.0 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
                   +   E           +  T  +   +R + +  + Q G   SA L+R    
Sbjct: 166 HQCWTEHRVVPQESYRVLPFSGLTICVT-KIPADERKEMEILIKQNGGKYSADLTRNCTH 224

Query: 688 IIVGDNP--GSKLEKAQQLG-VKIMNEEQF 714
           +I   +   G K + A++ G + I+  + F
Sbjct: 225 LITDISSPEGDKYKVARRWGHIHIVTRKWF 254


>gi|17380223|sp|Q9R152|PARP1_CRIGR RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
           AltName: Full=NAD(+) ADP-ribosyltransferase 1;
           Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1
 gi|5616520|gb|AAD45817.1|AF168781_1 poly ADP-ribose polymerase [Cricetulus griseus]
          Length = 1013

 Score = 45.0 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+           + N K++  G L +  + +A+  + +LG  ++         +S K 
Sbjct: 376 APTAVNSSCPADKPLSNMKILTLGKLSQ-SKDEAKATIEKLGGKLTGSANNASLCISTKK 434

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +  G K+E+ Q   V+++ E+ FL 
Sbjct: 435 EV----EKMGKKMEEVQAANVRVVCED-FLQ 460


>gi|281354063|gb|EFB29647.1| hypothetical protein PANDA_016433 [Ailuropoda melanoleuca]
          Length = 981

 Score = 45.0 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 41/92 (44%), Gaps = 12/92 (13%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+           + + K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 340 APAAVNSSTPPDKPLSSMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 398

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           ++    +    K+E+ ++ G+++++E+    L
Sbjct: 399 EV----EKMSKKMEEVREAGIRVVSEDFLRDL 426


>gi|223999261|ref|XP_002289303.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974511|gb|EED92840.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 287

 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                N      L +     +    ++ S   +   +  TG L    R+   + + Q+GA
Sbjct: 172 MNAMFNPAHSRILFQSHPWKVRSLPRSTSGSQDGFTVSVTGFLDA-SRYGIIDVLEQIGA 230

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
             +  L R    +I  +  G K  KA + G+ ++
Sbjct: 231 TYTDNLRRTNTHLICKEAQGMKYSKAVEWGIHVV 264


>gi|169834756|ref|YP_001715955.1| hypothetical protein CLK_A0328 [Clostridium botulinum A3 str.
          Loch Maree]
 gi|169408863|gb|ACA57273.1| hypothetical protein CLK_A0328 [Clostridium botulinum A3 str.
          Loch Maree]
          Length = 125

 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 20 ELSSL----EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
          E+  L     ++I  H   YY+ +  +I D  Y+   R  + + + +PDL 
Sbjct: 32 EIIELINKRRRQILVHSCIYYRLNDNLIDDYTYNEWARELENLQNMYPDLL 82


>gi|169598892|ref|XP_001792869.1| hypothetical protein SNOG_02255 [Phaeosphaeria nodorum SN15]
 gi|160704493|gb|EAT90467.2| hypothetical protein SNOG_02255 [Phaeosphaeria nodorum SN15]
          Length = 669

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKA 701
            ++   +  +G      +      +T LGA  S+ ++  T+I+I  +       +K++ A
Sbjct: 14  PLDGCVIATSGKFPGTTQTALASRITSLGATASSKVTSDTNILIATEKDYESNSTKVKAA 73

Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724
               + ++     L  L++  +T
Sbjct: 74  ASHDIPVVT----LDWLEECEST 92


>gi|225464980|ref|XP_002274597.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296084929|emb|CBI28338.3| unnamed protein product [Vitis vinifera]
          Length = 828

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            +    +E      R+            +  +G L +   H  +  + + G   +  +  
Sbjct: 180 ELIKNHQEQGNFPRRNLNPTGKPFTGMLICLSGRLSR-THHYWRTKIEEHGGKDANSVLG 238

Query: 684 KTDIIIVGDN----PGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            T +++          SK+ +A + G+ ++ E      +++   
Sbjct: 239 ATCLVVSPAERERGGSSKVVEAMERGIPVVREAWLSDSIEKQEA 282


>gi|307700344|ref|ZP_07637384.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307614555|gb|EFN93784.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 744

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 649 NKKLVFTGT--LQK--IQRHKAQEYVTQLGAVVSAILSR-KTDIIIVGDNP--GSKLEKA 701
             ++ FTGT  L     +R + +E     G      +++ + D ++  D     +K + A
Sbjct: 665 GVRICFTGTAMLDGVVYEREEMEEIAWAAGFHPVNNVTKTRCDCLVAADVATMSNKAKNA 724

Query: 702 QQLGVKIMNEEQFLFLLQ 719
            + G  +++ E FL  + 
Sbjct: 725 ARWGKPVISAEDFLHFVN 742


>gi|297280655|ref|XP_001090628.2| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Macaca
           mulatta]
          Length = 993

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+ G    +    + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 355 APAAGNSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 413

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 414 EV----EKMNKKMEEVKEANIRVVSED-FLQ 439


>gi|269977450|ref|ZP_06184422.1| AAA ATPase [Mobiluncus mulieris 28-1]
 gi|306819096|ref|ZP_07452810.1| tetratricopeptide (TPR) domain protein [Mobiluncus mulieris ATCC
           35239]
 gi|269934366|gb|EEZ90928.1| AAA ATPase [Mobiluncus mulieris 28-1]
 gi|304648072|gb|EFM45383.1| tetratricopeptide (TPR) domain protein [Mobiluncus mulieris ATCC
           35239]
          Length = 744

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 649 NKKLVFTGT--LQK--IQRHKAQEYVTQLGAVVSAILSR-KTDIIIVGDNP--GSKLEKA 701
             ++ FTGT  L     +R + +E     G      +++ + D ++  D     +K + A
Sbjct: 665 GVRICFTGTAMLDGVVYEREEMEEIAWAAGFHPVNNVTKTRCDCLVAADVATMSNKAKNA 724

Query: 702 QQLGVKIMNEEQFLFLLQ 719
            + G  +++ E FL  + 
Sbjct: 725 ARWGKPVISAEDFLHFVN 742


>gi|227875815|ref|ZP_03993941.1| AAA ATPase [Mobiluncus mulieris ATCC 35243]
 gi|227843563|gb|EEJ53746.1| AAA ATPase [Mobiluncus mulieris ATCC 35243]
          Length = 744

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 649 NKKLVFTGT--LQK--IQRHKAQEYVTQLGAVVSAILSR-KTDIIIVGDNP--GSKLEKA 701
             ++ FTGT  L     +R + +E     G      +++ + D ++  D     +K + A
Sbjct: 665 GVRICFTGTAMLDGVVYEREEMEEIAWAAGFHPVNNVTKTRCDCLVAADVATMSNKAKNA 724

Query: 702 QQLGVKIMNEEQFLFLLQ 719
            + G  +++ E FL  + 
Sbjct: 725 ARWGKPVISAEDFLHFVN 742


>gi|109018052|ref|XP_001090984.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 4 [Macaca
           mulatta]
          Length = 1014

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+ G    +    + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 376 APAAGNSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 434

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 435 EV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|156400174|ref|XP_001638875.1| predicted protein [Nematostella vectensis]
 gi|156225999|gb|EDO46812.1| predicted protein [Nematostella vectensis]
          Length = 968

 Score = 44.6 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKA 701
            + N  +   G L++ +   A   V QLG      ++ K D  I           K++ A
Sbjct: 338 PLSNMMVAVIGKLKRTKADVA-SCVAQLGGTTMDRVTSKVDCCISTQAEVSKSSKKMKDA 396

Query: 702 QQLGVKIMNEEQFLFLLQ--QYNTTLRIH 728
           ++  + +++E +FL  ++  ++N+ +  H
Sbjct: 397 EKFNIPVVSE-EFLDAIKDGEFNSNIAKH 424


>gi|332027308|gb|EGI67392.1| DNA topoisomerase II-binding protein 1 [Acromyrmex echinatior]
          Length = 1276

 Score = 44.6 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +  +G      +   Q+ V  +G + +  L      ++  +   +K EKA ++ + +M  
Sbjct: 118 ICASG-FDAEIKDWIQQRVEYMGGIFTKQLRSSVTHLVADNVMSAKYEKAVEMKIPVMT- 175

Query: 712 EQFLFLLQQYNTTLRIHDDD 731
           ++++  + + N    I  DD
Sbjct: 176 KEWIEAVWKANLKEVIKADD 195


>gi|281205805|gb|EFA79994.1| hypothetical protein PPL_06815 [Polysphondylium pallidum PN500]
          Length = 360

 Score = 44.6 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 9/79 (11%)

Query: 642 NVSSEIENKKLVFTGTLQKIQR----HKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS 696
             +   E    VF   L K        K  + ++ LG  V+  +++KT I I  DN   S
Sbjct: 1   MATEIFEQDVFVF---LDKPSDKDEHDKLLDTLSDLGGTVARSINKKTTIAICNDNSLTS 57

Query: 697 KLEKAQQLGVKIMNEEQFL 715
           ++EKA++L + ++  ++F+
Sbjct: 58  EIEKAEKLDIPVVK-KEFI 75


>gi|227820278|ref|YP_002824249.1| O-linked GlcNAc transferase [Sinorhizobium fredii NGR234]
 gi|227339277|gb|ACP23496.1| probable O-linked GlcNAc transferase [Sinorhizobium fredii NGR234]
          Length = 362

 Score = 44.6 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ---- 702
           +  K     G L    R      V + G  +   ++R+T  ++ G     K   A+    
Sbjct: 3   VAGKTFGILGALSAFPRRLIAREVERQGGHLRRGVTRQTAYVVFGRGLLLKATDAEIETR 62

Query: 703 -----QLGVKIMNEEQFLFLL 718
                  G ++++E  FL  L
Sbjct: 63  FEREAGCGRRLLSENGFLRRL 83


>gi|330799899|ref|XP_003287978.1| hypothetical protein DICPUDRAFT_55168 [Dictyostelium purpureum]
 gi|325082002|gb|EGC35499.1| hypothetical protein DICPUDRAFT_55168 [Dictyostelium purpureum]
          Length = 730

 Score = 44.6 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 647 IENKKLVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           ++++ +VF+G         +   +    + GA V   ++ KT  +I      SK+ KA  
Sbjct: 447 LKDQFIVFSGVYPLGTPVNKQPLRYLAEEFGASVENDITSKTTHVIAQRKGTSKVNKAIS 506

Query: 704 LGVKIMNEEQFLF----LLQQYNTTLRIHDDD 731
            G+K+++ +  +       +      ++ DDD
Sbjct: 507 KGLKVVSPQWLVESTRIWQRADENDFKLEDDD 538


>gi|302595903|sp|Q800K6|TOB1A_XENLA RecName: Full=DNA topoisomerase 2-binding protein 1-A; AltName:
           Full=Cut5 protein; AltName: Full=DNA topoisomerase
           II-binding protein 1-A; Short=TopBP1-A; Short=XtopBP
 gi|213625410|gb|AAI70557.1| Cut5-related protein [Xenopus laevis]
 gi|213626995|gb|AAI70556.1| Cut5-related protein [Xenopus laevis]
          Length = 1513

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
                +  TG L  + R + Q      G   +  L    +  +IV +  G K E A++  
Sbjct: 199 FRGCTICVTG-LSSLDRKEVQRLTALHGGEYTGQLKMNESTHLIVQEAKGQKYECARKWN 257

Query: 706 VKIMNEEQFLFLLQQY 721
           V  ++ + F   +++ 
Sbjct: 258 VHCISVQWFFDSIEKG 273


>gi|147904142|ref|NP_001082568.1| topoisomerase (DNA) II binding protein 1 [Xenopus laevis]
 gi|28881882|dbj|BAC65235.1| Cut5-related protein [Xenopus laevis]
          Length = 1513

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
                +  TG L  + R + Q      G   +  L    +  +IV +  G K E A++  
Sbjct: 199 FRGCTICVTG-LSSLDRKEVQRLTALHGGEYTGQLKMNESTHLIVQEAKGQKYECARKWN 257

Query: 706 VKIMNEEQFLFLLQQY 721
           V  ++ + F   +++ 
Sbjct: 258 VHCISVQWFFDSIEKG 273


>gi|324501223|gb|ADY40546.1| PAX-interacting protein 1 [Ascaris suum]
          Length = 1038

 Score = 44.2 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++  +      +EA  +     +     +       K +   G   + +R   +  VT +
Sbjct: 604 QWLNDVLAKKHLEAPFR--VAHLPTFWADNHRPASGKIIAING-FNQSERSGIRMMVTAI 660

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           GA  +  L++    ++     G K+E++++LGV ++N +  + L
Sbjct: 661 GARFTPYLTKHNHFLVTKTVEGEKVERSRELGVTVVNYQWLVEL 704


>gi|320165686|gb|EFW42585.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 2504

 Score = 44.2 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
           G     +     N+  V TG    +   + +  + + G  V+  ++R T  +++G +
Sbjct: 865 GVKNTALDPPFYNQIFVLTGFFS-LSSWQLEAMIVEYGGKVAQAVTRTTTHLLLGAS 920


>gi|225429724|ref|XP_002282127.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 546

 Score = 44.2 bits (103), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
             +       +  TG L K  R +  +   +LG   S  L  +   ++V    G KL+ A
Sbjct: 51  RSNGPFSGLVICVTG-LSKEARKQVMDAAERLGGQYSPNLHPQCTHLVVQSFGGRKLDHA 109

Query: 702 QQLG 705
            + G
Sbjct: 110 LKHG 113


>gi|321475185|gb|EFX86148.1| hypothetical protein DAPPUDRAFT_222139 [Daphnia pulex]
          Length = 597

 Score = 44.2 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK--LEKAQQLGVKIMN 710
           V TG+     +  A E   +LGA V    S+K   +I  D  GSK   +KA+ LG+ I++
Sbjct: 33  VRTGS-DNRSKSVANEM-ERLGATVVLHFSKKVTHVIFKD--GSKPIYDKARTLGIPIVS 88


>gi|299742759|ref|XP_001832754.2| hypothetical protein CC1G_11918 [Coprinopsis cinerea okayama7#130]
 gi|298405334|gb|EAU89078.2| hypothetical protein CC1G_11918 [Coprinopsis cinerea okayama7#130]
          Length = 1706

 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           S     ++  T       R   ++ +  +GA  +  +S K  ++I      +K +KA   
Sbjct: 515 SGFSGHEITVT-NYTGEAREYLKKLIITMGATFTPSMSGKNTVLIAATKDSTKAQKALSW 573

Query: 705 GVKIMN----EEQFLF 716
            + ++N    E+ F+ 
Sbjct: 574 SIPVVNHTWLEDCFVQ 589


>gi|116193565|ref|XP_001222595.1| hypothetical protein CHGG_06500 [Chaetomium globosum CBS 148.51]
 gi|88182413|gb|EAQ89881.1| hypothetical protein CHGG_06500 [Chaetomium globosum CBS 148.51]
          Length = 399

 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           +++    +  TG L    R      V ++GA +   +   T   +  +  G + EKA +L
Sbjct: 157 TDLSGITIT-TGILPAAVREGLGAAVERIGAKIVDGVRIDTTHFVTTEGRGLQWEKANEL 215

Query: 705 GVKIM 709
            + I+
Sbjct: 216 NIPIV 220


>gi|308481051|ref|XP_003102731.1| CRE-PIS-1 protein [Caenorhabditis remanei]
 gi|308260817|gb|EFP04770.1| CRE-PIS-1 protein [Caenorhabditis remanei]
          Length = 799

 Score = 44.2 bits (103), Expect = 0.087,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQRHKAQEYVTQLGA 675
              +  ++    ++   +       +        K    +G   + +R         +GA
Sbjct: 601 QWVVDVIQREKADIPWKLAHLPAPFNDNFRPYLGKLFSLSG-YDESERGAISFMAEAMGA 659

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            ++  L+R+ D++I    P  K+ KAQ+  + ++N
Sbjct: 660 KITPFLARQNDLLIA-KAPSEKVTKAQEWKIPVVN 693


>gi|322700584|gb|EFY92338.1| BRCT domain-containing protein [Metarhizium acridum CQMa 102]
          Length = 855

 Score = 44.2 bits (103), Expect = 0.088,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 18/137 (13%)

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
             + +  V ++  +     +    N   ++AL K  + +   H    +   +   +  TG
Sbjct: 84  DAMWIEAVTELWKKDEEIDFMALENEHWLKALEKCGTDTASPHGGAATGR-QPLLICSTG 142

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV---------- 706
                QR +    +T  G   +A L+R+   ++V    G K   A+  GV          
Sbjct: 143 F--GDQRDEIAAKITANGGQYTADLTRRCTHLVVSKPEGKKFTAAKSWGVYTVTLGWLDQ 200

Query: 707 -----KIMNEEQFLFLL 718
                 I+ E +F  LL
Sbjct: 201 SIQRGLILEEAKFDPLL 217


>gi|170103374|ref|XP_001882902.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164642273|gb|EDR06530.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1624

 Score = 43.9 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN----EEQFLF 716
           R   ++ +T +GA  +  ++ K  ++I     G+K  KA    + ++N    E+ F+ 
Sbjct: 391 REYLKKLITAMGATFTPSMTGKNTVLIAAFLTGTKATKALSWSIPVVNHTWLEDCFVQ 448


>gi|328710855|ref|XP_001946764.2| PREDICTED: DNA topoisomerase 2-binding protein 1-B-like
           [Acyrthosiphon pisum]
          Length = 1285

 Score = 43.9 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           L   ++ + +E V  +G + S  L   T  ++VG     K  KA + G+ IM E
Sbjct: 125 LSPKEKERVKEKVEYMGGIFSHNLRDSTTHLMVGKAGSQKHIKAIENGINIMTE 178



 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 22/112 (19%)

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVF-----TGTLQKIQRHKAQEYVTQL 673
           C        +         +           K  V      TG+    +R+  +E    L
Sbjct: 625 CLWIEDCYNLVEQTPVEYYHKPVIFSGSMPLKNCVISITNYTGS----ERYFLKEVSLLL 680

Query: 674 GAVVSAILSRK---------TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           GA     LSRK         T  +I     G K E + + GV ++++E  L 
Sbjct: 681 GANFQDALSRKSKPEDNIMMTTHLICSTPEGPKYEASVKWGVPVVSKEWLLK 732


>gi|325091085|gb|EGC44395.1| BRCT domain-containing protein [Ajellomyces capsulatus H88]
          Length = 921

 Score = 43.9 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 31/83 (37%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E+          +  TG      R+  Q+ +T+ GA     L++    +I     G K 
Sbjct: 140 EEQYRFPTFAGLSICLTGFDDMNHRNSLQKLITENGAEFRRDLTKSVTHLIARSGYGQKY 199

Query: 699 EKAQQLGVKIMNEEQFLFLLQQY 721
           + A    + +++ +     L++ 
Sbjct: 200 KYATLWKITVVSLKWLQDSLERG 222


>gi|240275250|gb|EER38764.1| BRCT domain-containing protein [Ajellomyces capsulatus H143]
          Length = 891

 Score = 43.9 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 31/83 (37%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E+          +  TG      R+  Q+ +T+ GA     L++    +I     G K 
Sbjct: 110 EEQYRFPTFAGLSICLTGFDDMNHRNSLQKLITENGAEFRRDLTKSVTHLIARSGYGQKY 169

Query: 699 EKAQQLGVKIMNEEQFLFLLQQY 721
           + A    + +++ +     L++ 
Sbjct: 170 KYATLWKITVVSLKWLQDSLERG 192


>gi|225561645|gb|EEH09925.1| BRCT domain-containing protein [Ajellomyces capsulatus G186AR]
          Length = 891

 Score = 43.9 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 31/83 (37%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E+          +  TG      R+  Q+ +T+ GA     L++    +I     G K 
Sbjct: 110 EEQYRFPTFAGLSICLTGFDDMNHRNSLQKLITENGAEFRRDLTKSVTHLIARSGYGQKY 169

Query: 699 EKAQQLGVKIMNEEQFLFLLQQY 721
           + A    + +++ +     L++ 
Sbjct: 170 KYATLWKITVVSLKWLQDSLERG 192


>gi|154283039|ref|XP_001542315.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410495|gb|EDN05883.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 874

 Score = 43.9 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 31/83 (37%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E+          +  TG      R+  Q+ +T+ GA     L++    +I     G K 
Sbjct: 110 EEQYRFPTFAGLSICLTGFDDMNHRNSLQKLITENGAEFRRDLTKSVTHLIARSGYGQKY 169

Query: 699 EKAQQLGVKIMNEEQFLFLLQQY 721
           + A    + +++ +     L++ 
Sbjct: 170 KYATLWKITVVSLKWLQDSLERG 192


>gi|298675948|ref|YP_003727698.1| excinuclease ABC subunit C [Methanohalobium evestigatum Z-7303]
 gi|298288936|gb|ADI74902.1| excinuclease ABC, C subunit [Methanohalobium evestigatum Z-7303]
          Length = 603

 Score = 43.9 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 25/143 (17%)

Query: 482 NIEGLG-KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           NI  +G  +Q +     E+    +   +D   L  R +    +          +    + 
Sbjct: 485 NIPLIGLAKQYEHIITPENKVIILSQKSDSMKLLMRIRDEAHRFAVSSHRRKRTAKLTHS 544

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +++              GI  +G    R+L +++ +  N            N     L +
Sbjct: 545 ALD--------------GIPGIGESKKRALLEHFGTVDNI----------INASIKDLKQ 580

Query: 601 VPLVGDIIAQAIVEFYQNPRNIC 623
           V  + + +AQ IV++++N  N  
Sbjct: 581 VEGISNNLAQKIVDYFENDDNKK 603


>gi|194382466|dbj|BAG64403.1| unnamed protein product [Homo sapiens]
          Length = 993

 Score = 43.9 bits (102), Expect = 0.100,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+      +    + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 355 APAAVNSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 413

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 414 EV----EKMNKKMEEVKEANIRVVSED-FLQ 439


>gi|190167|gb|AAA60137.1| poly(ADP-ribose) polymerase [Homo sapiens]
          Length = 1014

 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+      +    + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 376 APAAVNSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 434

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 435 EV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|213405084|ref|XP_002173314.1| S-M checkpoint control protein rad4 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001361|gb|EEB07021.1| S-M checkpoint control protein rad4 [Schizosaccharomyces japonicus
           yFS275]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A     +  +  N       +      +      + S     ++  T  + + +R + +
Sbjct: 67  LAFLKDSWIPDLYNSWLTGEEIDPTHWQLEYTLPALFST----RVCIT-NIDQPERSRIE 121

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           + V + G   S  L+R    +I G+  G K E A +  +K++ +E     +++ 
Sbjct: 122 QAVVRNGGFFSPDLTRDITHLIAGNMTGRKYEFALKWNIKVVRQEWLWDSIRRG 175


>gi|168270914|dbj|BAG10250.1| poly [ADP-ribose] polymerase-1 [synthetic construct]
          Length = 1014

 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+      +    + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 376 APAAVNSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 434

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 435 EV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|123981466|gb|ABM82562.1| poly (ADP-ribose) polymerase family, member 1 [synthetic construct]
          Length = 1014

 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+      +    + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 376 APAAVNSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 434

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 435 EV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|22902366|gb|AAH37545.1| Poly (ADP-ribose) polymerase 1 [Homo sapiens]
 gi|123996301|gb|ABM85752.1| poly (ADP-ribose) polymerase family, member 1 [synthetic construct]
          Length = 1014

 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+      +    + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 376 APAAVNSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 434

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 435 EV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|156523968|ref|NP_001609.2| poly [ADP-ribose] polymerase 1 [Homo sapiens]
 gi|130781|sp|P09874|PARP1_HUMAN RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
           AltName: Full=NAD(+) ADP-ribosyltransferase 1;
           Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1
 gi|21693601|gb|AAM75364.1|AF524947_1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) [Homo
           sapiens]
 gi|178190|gb|AAA51663.1| NAD+ ADP-ribosyltransferase [Homo sapiens]
 gi|55663671|emb|CAH70215.1| poly (ADP-ribose) polymerase 1 [Homo sapiens]
 gi|55959449|emb|CAI12102.1| poly (ADP-ribose) polymerase 1 [Homo sapiens]
 gi|119590189|gb|EAW69783.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_a [Homo
           sapiens]
 gi|119590190|gb|EAW69784.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_a [Homo
           sapiens]
          Length = 1014

 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+      +    + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 376 APAAVNSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 434

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 435 EV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|337424|gb|AAB59447.1| poly(ADP-ribose) synthetase [Homo sapiens]
          Length = 1014

 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+      +    + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 376 APAAVNSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 434

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 435 EV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|297661828|ref|XP_002809429.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 2 [Pongo
           abelii]
          Length = 951

 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+      +    + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 313 APAAVNSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 371

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 372 EV----EKMNKKMEEVKEANIRVVSED-FLQ 397


>gi|297661826|ref|XP_002809428.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 1 [Pongo
           abelii]
          Length = 970

 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+      +    + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 332 APAAVNSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 390

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 391 EV----EKMNKKMEEVKEANIRVVSED-FLQ 416


>gi|190267|gb|AAA60155.1| poly(ADP-ribose) polymerase [Homo sapiens]
          Length = 1014

 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+      +    + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 376 APAAVNSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 434

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 435 EV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|328721024|ref|XP_001944818.2| PREDICTED: hypothetical protein LOC100169197 [Acyrthosiphon pisum]
          Length = 626

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 37/121 (30%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII--------------- 689
           S + +K  +    +  I   K ++ +   G  +   L + TD +I               
Sbjct: 27  SILYDKTFLID-IVDNIVSSKVEKLINSYGGKIIQSLEKSTDYLISDIIQNEGAKRSTSS 85

Query: 690 ----------VGDNPGSK-------LEKAQQLGVKIMNEEQF----LFLLQQYNTTLRIH 728
                     V + P SK       + KA  L +KI++ ++F      LL+++ T  +  
Sbjct: 86  ETNNCKKDIEVKNGPSSKRKNSVDLINKANILNIKILSAKKFQHWLKSLLKKHRTNKKPT 145

Query: 729 D 729
           D
Sbjct: 146 D 146


>gi|194210176|ref|XP_001914900.1| PREDICTED: similar to PAX interacting (with
           transcription-activation domain) protein 1 [Equus
           caballus]
          Length = 1122

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 10/157 (6%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--NPRNICAV 625
           + LA +    Q     ++   +      L   +V  +    AQAI E  +      + AV
Sbjct: 678 QLLATWKRIIQAHGGAVDPAFSSRCTHLLCESQVSGM---YAQAIRERKRCVTAHWLNAV 734

Query: 626 EALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
               K V P                     +  TG +    R   +      GA  +  L
Sbjct: 735 LKRKKMVPPHRALHFPVAFPPGGKPCSQHIISVTGFVDS-DRDDLKLMAYLAGAKYTGYL 793

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R   ++I  +  G K EKA++  +  +N +    +L
Sbjct: 794 CRSNTVLICKEPAGLKYEKAKEWRIPCVNAQWLGDIL 830


>gi|225556539|gb|EEH04827.1| RNA polymerase II C-terminal domain phosphatase component
           [Ajellomyces capsulatus G186AR]
          Length = 871

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 652 LVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
           LVF+G L             +    GA++S  +S KT  ++ G N  +K+ +A +   +K
Sbjct: 500 LVFSGVLPLGTDTQNADISLWAKSFGAIISHKISSKTTHLVAGRNRTAKVREATRYPNIK 559

Query: 708 IMNEEQFLFLLQQYN 722
           I+  +  L  + Q+ 
Sbjct: 560 IVTVQWLLDSITQWK 574


>gi|189065421|dbj|BAG35260.1| unnamed protein product [Homo sapiens]
          Length = 1014

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR-----KTDI 687
           +P+      +    + N K++  G L +  + + +  + +LG  ++   ++      T  
Sbjct: 376 APAAVNSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCSSTKK 434

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  +    K+E+ ++  +++++E+ FL 
Sbjct: 435 EV--EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|66824241|ref|XP_645475.1| hypothetical protein DDB_G0271690 [Dictyostelium discoideum AX4]
 gi|60473594|gb|EAL71535.1| hypothetical protein DDB_G0271690 [Dictyostelium discoideum AX4]
          Length = 782

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           I   E      ++   +VF+G       IQ+   +    + G+VV   ++ +T  +I   
Sbjct: 424 IDLVEIVKKDILKGTYIVFSGVYPLGTPIQKQPLRWLAEEFGSVVQNDINNETTHVIAQR 483

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLF 716
              SK+ KA   G+K+++ +  + 
Sbjct: 484 KGTSKVNKALSKGLKVISPQWLIE 507


>gi|260817400|ref|XP_002603575.1| hypothetical protein BRAFLDRAFT_126941 [Branchiostoma floridae]
 gi|229288894|gb|EEN59586.1| hypothetical protein BRAFLDRAFT_126941 [Branchiostoma floridae]
          Length = 923

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 634 PSIGRHEKNVSSEI-----ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
             +G    +V   +     ++  L FTG  QK +     + V  +G  +    S K   +
Sbjct: 91  AEMGEALPSVQRPLYCTSMKDLILCFTGFRQKEKLSHLVDLVHFMGGSIRKDFSTKVTHL 150

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEE 712
           +     G K   A  LG  IM EE
Sbjct: 151 VANSTSGDKYRVAVSLGTPIMTEE 174


>gi|302408875|ref|XP_003002272.1| S-M checkpoint control protein rad4 [Verticillium albo-atrum
           VaMs.102]
 gi|261359193|gb|EEY21621.1| S-M checkpoint control protein rad4 [Verticillium albo-atrum
           VaMs.102]
          Length = 803

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 8/123 (6%)

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL----VFTGT 657
           P +  + A+ I       +N   ++    E    +   E +     E  ++      TG 
Sbjct: 78  PDIKAMDARWIDAVADLWKNAAEIDFAALETQWQLKPLETSGPEPGEEDRVKLLCCMTGF 137

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
               +RH   E +   G V +  L+++   +IV    G K   A+   ++ ++    L  
Sbjct: 138 EDPDERHAIIEKINDNGGVYTGDLTKRVTHLIVCKPDGKKYRAARNWNIRTVS----LAW 193

Query: 718 LQQ 720
           L Q
Sbjct: 194 LDQ 196


>gi|304421460|gb|ADM32529.1| parp [Bombyx mori]
          Length = 965

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 17/96 (17%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKLEKA 701
            ++N K    GTL+K ++   +  + +LG    + LS  T  +I      +   SK++  
Sbjct: 351 PLKNLKFFIYGTLKKNEKENIKNRIIKLGGDPVSKLSEATVAVISTKADVEKMSSKMQSI 410

Query: 702 QQLGVKIMNEEQF-------------LFLLQQYNTT 724
           Q L + +++E                L L+++YN  
Sbjct: 411 QYLDIVVLDESFLNSIDPETGTVARSLELMKEYNIA 446


>gi|218260666|ref|ZP_03475862.1| hypothetical protein PRABACTJOHN_01526 [Parabacteroides johnsonii
          DSM 18315]
 gi|218224416|gb|EEC97066.1| hypothetical protein PRABACTJOHN_01526 [Parabacteroides johnsonii
          DSM 18315]
          Length = 57

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 12 LSIEQ--ARKELSSLEQEISYHDDCYYQYSKPII 43
          LS E+   + ++ +L + +  H+  YY  S P I
Sbjct: 24 LSTEKMVVKDKIKALREALEQHNYNYYVLSAPTI 57


>gi|315075308|ref|NP_001186667.1| topoisomerase (DNA) II binding protein 1 [Danio rerio]
          Length = 1526

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
           ++   +  TG L  ++R + Q    Q GA  +  L       +IV +  G K E A++  
Sbjct: 200 LKGCTVCVTG-LSTVERKEVQRLCDQNGATYTGQLKMNECTHLIVNEPTGQKYEFARKWN 258

Query: 706 VKIMNEEQFLFLLQQY 721
           V  ++       +++ 
Sbjct: 259 VYCVSLHWLFDSIEKG 274



 Score = 40.8 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           L K  R +  + +  +G  V   L+     ++ G+    K   A  LG  I+
Sbjct: 117 LDKEARSEVMDLIQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPIL 168


>gi|163914811|ref|NP_001106617.1| epithelial cell transforming sequence 2 oncogene [Xenopus
           (Silurana) tropicalis]
 gi|160773837|gb|AAI55459.1| LOC100127840 protein [Xenopus (Silurana) tropicalis]
          Length = 878

 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 32/176 (18%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF--------YQNPRNICAVEALLKEVSPSI 636
           + +I    +  +  I+   V + +     EF        +Q P      +A  + + P I
Sbjct: 62  DELIKALEEIKVPCIKTDSVEEFVEADTPEFESVFVISDFQKPAYRFLYKADCRVLGPPI 121

Query: 637 GRHEKNVSSEIE------------NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
             +       +             N  L FTG  +K +  K    V  +G  +    S K
Sbjct: 122 IIYCAQKGEPLPFTSRPLYCASMLNLVLCFTGFRKKEELVKLVTLVHHMGGTIRKDFSSK 181

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIM------------NEEQFLFLLQQYNTTLRIH 728
              +I     G K   A  LG  IM            NE +F    +++ +  ++ 
Sbjct: 182 VTHLIANSTHGDKFRVAVSLGTPIMKADWIIQAWEKRNELEFSATNEEFKSKFKVP 237


>gi|149641631|ref|XP_001514646.1| PREDICTED: similar to Poly [ADP-ribose] polymerase 1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase 1)
           (Poly[ADP-ribose] synthetase 1) [Ornithorhynchus
           anatinus]
          Length = 972

 Score = 43.5 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR-----KTDI 687
           +P            + N K++  G L +  + + +  + +LG  ++   ++      T  
Sbjct: 334 APPTLNSTVPADKPLSNMKILTLGKLSR-NKEEMKATIEELGGKLTGSANKASLCISTQK 392

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  +    K+E+ ++ GV++++E +FL 
Sbjct: 393 EV--EKMNKKMEEVKEAGVRVVSE-EFLK 418


>gi|241950767|ref|XP_002418106.1| DNA repair protein, putative; cell cycle checkpoint protein,
           putative; regulator of ty1 transposition protein,
           putative [Candida dubliniensis CD36]
 gi|223641445|emb|CAX43406.1| DNA repair protein, putative [Candida dubliniensis CD36]
          Length = 902

 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           + +E  K+  T       R    + +T +G V +  L+++ D ++ G   G K + A
Sbjct: 338 NGLEGLKISIT-NYSGEARSYLSKLITTMGGVFTKTLTKENDYLVCGKAEGRKFDAA 393


>gi|72161118|ref|YP_288775.1| exonuclease [Thermobifida fusca YX]
 gi|71914850|gb|AAZ54752.1| exonuclease [Thermobifida fusca YX]
          Length = 516

 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 68/162 (41%), Gaps = 11/162 (6%)

Query: 560 RHVGAEIARS--LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           R VG E  +   LA      Q  A+ ++        D          G + A  + E  +
Sbjct: 258 RVVGEEAEQLALLASRAGLTQETARGVHGEFLLRARDRAEAD-----GVVTAAELRELQR 312

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +N+ AV  L+ ++  +    +   +  ++  +++  G  +++      +Y    GA V
Sbjct: 313 AAKNL-AVSHLISDLEEAAAAEKARRNGPLKGWRILPVGEGKELT--DVMDYAVDHGAKV 369

Query: 678 SAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFLFLL 718
           +A +++   ++I  D    +K  +A++ GV I+  ++   LL
Sbjct: 370 AANVTKTVRLVIAPDGVETTKTAQARERGVPILTPKEAWTLL 411


>gi|255081344|ref|XP_002507894.1| predicted protein [Micromonas sp. RCC299]
 gi|226523170|gb|ACO69152.1| predicted protein [Micromonas sp. RCC299]
          Length = 970

 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           V+ ++       +    +           ++        +  TG   + +R + +  VT+
Sbjct: 57  VKLFKPVVTFAWLRDSAEAGELLPVEEVGHIPKAFLGLCVCVTG-YTQDERTELEALVTK 115

Query: 673 LGAV-VSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEE 712
            G + +S ++  K   ++       K   A++  G+KI++ E
Sbjct: 116 NGGLYMSDLVKGKCTHLVASGTTSGKYTHAKKWDGIKIVSRE 157


>gi|323140812|ref|ZP_08075727.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414694|gb|EFY05498.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Phascolarctobacterium sp. YIT 12067]
          Length = 304

 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 41/189 (21%)

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRNI 622
           IA +LA +Y   +  A +  +++       L+   +P +G     A+ E++       + 
Sbjct: 115 IAENLAGHY--AKRLANDYVDVMK------LAQNELPFLGRYKQTAVAEYFNIATAGAHR 166

Query: 623 CAVEALLKEVS--------------PSIGRHEKNVSS-----EIENKKLVFTGTLQKIQR 663
             V+  +                  P   +    V S      + +K +V  G+   +  
Sbjct: 167 ALVDCNICNGCYQKLKELAVADYHLPPKQKELAIVPSFRRLRPLADKNIVLLGSFDGLYL 226

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDN-----PGSKLEKAQQL-----GVKIMNEEQ 713
              QE +T LGA V+  ++  +D++IVG        G+ L++A  +      + I+ E+ 
Sbjct: 227 KNLQEILTALGASVAYHVTAASDMVIVGTADASVCGGADLQRAVSMKNAGKNIYILKEDV 286

Query: 714 FLF-LLQQY 721
           F   LL + 
Sbjct: 287 FCQSLLAKG 295


>gi|241602471|ref|XP_002405192.1| topbp1, putative [Ixodes scapularis]
 gi|215500576|gb|EEC10070.1| topbp1, putative [Ixodes scapularis]
          Length = 1362

 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKL---VFTGT-LQKIQRHKAQEYVTQLGAV 676
           N   V  L   +     +      + + +      V T + L   +R K Q +V  +G  
Sbjct: 65  NCRVVGPLCMALCIQEQQSLPRRPNPLYSLSFRGMVVTVSALSPPERQKVQTWVELMGGT 124

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL-QQYNTTLRIHDDD 731
             A L++    ++ G+    K   A    + +M + Q++ L  ++   TL     D
Sbjct: 125 YMAALTKSVTHVVAGEVGSKKYHAAASRKLPVM-QPQWVKLFWEKEQHTLAHASSD 179


>gi|332252144|ref|XP_003275213.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Nomascus leucogenys]
          Length = 955

 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+      +    + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 376 APTAVDSSASADKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKK 434

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 435 EV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|67541452|ref|XP_664500.1| hypothetical protein AN6896.2 [Aspergillus nidulans FGSC A4]
 gi|40739105|gb|EAA58295.1| hypothetical protein AN6896.2 [Aspergillus nidulans FGSC A4]
 gi|259480497|tpe|CBF71683.1| TPA: BRCT domain protein (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 796

 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 621 NICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTG----TLQKIQRHKAQEYVTQLG 674
            I AV     +   +  R   E+          +  TG    +     R+  +      G
Sbjct: 89  WIEAVRQSWMQGGDTDIRALEEQYRLPTFSGTAICITGFEDTSFVVNLRNYIRNKAQLNG 148

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           A     L+++   +I     G K + A Q  VK++  + F   +++ 
Sbjct: 149 ADFRKDLTKQVTHLIARTAGGEKYKYATQWNVKVVTLKWFTDSMERG 195


>gi|328872151|gb|EGG20518.1| calmodulin-binding protein [Dictyostelium fasciculatum]
          Length = 1042

 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV---G--D 692
                VS+  EN   V   ++   ++    + + + G       S K   +I    G  +
Sbjct: 173 EQSHPVSNIFENLGFVIDQSINLKRKMDLVKIIKRNGGKSCYSCSSKATHLITTYQGFLE 232

Query: 693 NPGSKLEKAQQLGVKIM 709
           N  +K+++AQQ+G+ I+
Sbjct: 233 NT-TKVQQAQQMGIPIL 248


>gi|322790245|gb|EFZ15244.1| hypothetical protein SINV_08424 [Solenopsis invicta]
          Length = 1392

 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 649  NKKLV-FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K+++ F+G  +  +R K +  +  LGA  +   SR   +++     G K +KA++    
Sbjct: 1028 GKQIISFSG-FEGEERAKIKFMLEALGAKYTNYFSRHNTLLVCRRPDGQKYKKAREWQTS 1086

Query: 708  IMNEEQFLFLL 718
            ++N +    LL
Sbjct: 1087 VVNAQWLTDLL 1097


>gi|6978455|ref|NP_037195.1| poly [ADP-ribose] polymerase 1 [Rattus norvegicus]
 gi|3123251|sp|P27008|PARP1_RAT RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
           AltName: Full=NAD(+) ADP-ribosyltransferase 1;
           Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1
 gi|2896792|gb|AAC53544.1| poly(ADP-ribose) polymerase [Rattus norvegicus]
 gi|55250408|gb|AAH85765.1| Poly (ADP-ribose) polymerase 1 [Rattus norvegicus]
 gi|149040870|gb|EDL94827.1| poly (ADP-ribose) polymerase family, member 1 [Rattus norvegicus]
          Length = 1014

 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+           + N K++  G L +  + +A+  + +LG  ++         +S K 
Sbjct: 377 APTAVNSSAPADKPLSNMKILTLGKLSQ-NKDEAKAMIEKLGGKLTGSANKASLCISTKK 435

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ +   V+++ E+ FL 
Sbjct: 436 EV----EKMSKKMEEVKAANVRVVCED-FLQ 461


>gi|121705758|ref|XP_001271142.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Aspergillus
           clavatus NRRL 1]
 gi|119399288|gb|EAW09716.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Aspergillus
           clavatus NRRL 1]
          Length = 826

 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 647 IENKKLVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +    LVF+G L             +    GAV+S  ++RKT  ++ G N  +K+ +A +
Sbjct: 512 LGGVVLVFSGVLPLGTDTQNADISLWTKSFGAVISTKINRKTTHLVAGRNRTAKVREATR 571

Query: 704 L-GVKIMNEEQFLFLLQQYN 722
              +KI+  +  L  L Q+ 
Sbjct: 572 YPNIKIVTTQWLLDTLTQWK 591


>gi|322711287|gb|EFZ02861.1| BRCT domain-containing protein [Metarhizium anisopliae ARSEF 23]
          Length = 849

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 19/96 (19%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV----- 706
           +  TG     QR +    +T  G   +A L+R+   ++V    G K   A+  GV     
Sbjct: 138 ICLTGF--GDQRDEIAAKITANGGQYTADLTRRCTHLVVSKPEGKKFTAAKSWGVYTVTL 195

Query: 707 ----------KIMNEEQFLFLL--QQYNTTLRIHDD 730
                      I+ E +F  LL  ++        +D
Sbjct: 196 SWLDQSIQRGLILEEAKFDPLLPVEEQGVGAWKKED 231


>gi|158291429|ref|XP_312938.3| AGAP003230-PA [Anopheles gambiae str. PEST]
 gi|157017770|gb|EAA08394.3| AGAP003230-PA [Anopheles gambiae str. PEST]
          Length = 1000

 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-- 694
               K     + + + V  G      + + +  + +LG  V   ++  T  II       
Sbjct: 378 EPKIKREKPPLYDMEFVILGK-TATPKDQLKLKIQKLGGKVVTKIASHTAAIISTPEEVE 436

Query: 695 --GSKLEKAQQLGVKIMNEEQFLF 716
             GS++ +A++L ++++ E+ FL 
Sbjct: 437 RLGSRMAEAKELQIQVVPED-FLE 459


>gi|46128551|ref|XP_388829.1| hypothetical protein FG08653.1 [Gibberella zeae PH-1]
          Length = 412

 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           +++    +  TG L    R    + V ++GA +   +   T   +  +  G + EKA + 
Sbjct: 166 TDLRGITIT-TGILPSSTRDNLTKAVERIGAKLVDGVRIDTTHFVTTEGRGQQWEKAVES 224

Query: 705 GVKIM 709
            + ++
Sbjct: 225 NIPVV 229


>gi|242793677|ref|XP_002482213.1| poly(ADP)-ribose polymerase PARP, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218718801|gb|EED18221.1| poly(ADP)-ribose polymerase PARP, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 666

 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 642 NVSSEIENKKLVFTGTL---QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGS 696
            V +  +   +  +GT      + + K ++ + + G   S  +S     ++    +  GS
Sbjct: 1   MVPTPFKGSVIAVSGTFRTIPPMTQDKLKKIIEEGGGTFSPKVSNDCTHLVTSLKNATGS 60

Query: 697 --KLEKAQQLG 705
             K ++A  L 
Sbjct: 61  NAKFKQASALN 71


>gi|320166709|gb|EFW43608.1| hypothetical protein CAOG_01652 [Capsaspora owczarzaki ATCC 30864]
          Length = 1298

 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
            +++  +  +   +  + R+  ++ V++LG + +   SRK+D+++ G   GSK E A   
Sbjct: 502 PLKDMTICIS-MFENPRDRNALRDQVSRLGGLFTERFSRKSDVLVCGSPQGSKFETAGAW 560

Query: 705 GV 706
           GV
Sbjct: 561 GV 562


>gi|325087549|gb|EGC40859.1| RNA polymerase II C-terminal domain phosphatase component
           [Ajellomyces capsulatus H88]
          Length = 885

 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 652 LVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
           LVF+G L             +    GA++S  +S KT  ++ G N  +K+ +A +   +K
Sbjct: 500 LVFSGVLPLGTDTQNADISLWAKSFGAIISQKISSKTTHLVAGRNRTAKVREATRYPNIK 559

Query: 708 IMNEEQFLFLLQQYN 722
           I+  +  L  + Q+ 
Sbjct: 560 IVTVQWLLDSITQWK 574


>gi|154284394|ref|XP_001542992.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150406633|gb|EDN02174.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 654

 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 652 LVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
           LVF+G L             +    GA++S  +S KT  ++ G N  +K+ +A +   +K
Sbjct: 455 LVFSGVLPLGTDTQNADISLWAKSFGAIISQKISSKTTHLVAGRNRTAKVREATRYPNIK 514

Query: 708 IMNEEQFLFLLQQYN 722
           I+  +  L  + Q+ 
Sbjct: 515 IVTVQWLLDSITQWK 529


>gi|330899004|gb|EGH30423.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 86

 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 16/84 (19%)

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
              DS+   R    + ++ ++G+   G                     + +   + + W 
Sbjct: 2   KRIDSLQTARERPFQTWLKAIGLPPTGGA-------------RLPDNWHELADRSVEQWQ 48

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPR 620
           +    P +G   A  +  F+Q+P+
Sbjct: 49  AE---PGIGPGRAARLRAFFQDPQ 69


>gi|194222593|ref|XP_001494218.2| PREDICTED: epithelial cell transforming sequence 2 oncogene isoform
           1 [Equus caballus]
          Length = 883

 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 24/142 (16%)

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI------------ENKKLVFTGTL 658
            IV  +Q+       +   + + P +  +       +             N  L FTG  
Sbjct: 97  FIVMNFQDAVFNELYKNDCRVIGPPVVLNCAQKGEPLPFSCRPLYCTSMMNLTLCFTGFR 156

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM--------- 709
           +K +  +    V  +G V+    + K   ++     G K   A  LG  IM         
Sbjct: 157 KKEELVRLVTLVHHMGGVIRKDCNSKVTHLVANCTQGEKFRIAVSLGTPIMKPEWIYKAW 216

Query: 710 ---NEEQFLFLLQQYNTTLRIH 728
              NE+ F   +  +    ++ 
Sbjct: 217 ERRNEQDFCASVDDFRNDFKVP 238


>gi|11499994|ref|NP_071240.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304]
 gi|2650671|gb|AAB91244.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 208

 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K         + +  I  +G + A  L  Y+ S Q  A          N     L RV  
Sbjct: 147 KSHENPKIAMLTA--IPGIGEKKAEKLLDYFGSIQRIA----------NASIAELKRVDG 194

Query: 604 VGDIIAQAIVEFYQ 617
           +G+  A+ I  F++
Sbjct: 195 IGEKKAREIYRFFR 208


>gi|150865325|ref|XP_001384492.2| DNA polymerase II complex component [Scheffersomyces stipitis CBS
           6054]
 gi|149386581|gb|ABN66463.2| DNA polymerase II complex component [Scheffersomyces stipitis CBS
           6054]
          Length = 693

 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE---KAQ 702
            ++      TG ++  +R +  E +  LG +  + L      ++VGD   +K +   K +
Sbjct: 6   PLDGLSFCCTG-IKAKKREEIAEKIAALGGIHYSDLMSDVRFLLVGDRDTAKYQFCIK-E 63

Query: 703 QLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           +  V  + E+  L L   Y+  +R  DDD
Sbjct: 64  RYDVTFLTEDSILEL---YDCWIRGDDDD 89


>gi|200389057|ref|ZP_03215669.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199606155|gb|EDZ04700.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 62

 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           E        V + +++   ++  G N G SK+  A+  G  I++EE F+  ++    
Sbjct: 3   EVAEAHSMTVRSSVTQNLQMLCCGYNAGPSKVNAARMKGTIIIDEESFVHFIETGEI 59


>gi|147903139|ref|NP_001081571.1| poly [ADP-ribose] polymerase 1 [Xenopus laevis]
 gi|84569962|gb|AAI10779.1| PARP protein [Xenopus laevis]
          Length = 1011

 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR-----KTDIIIVG 691
                     + N K++  G L K  + + +  +  LG  V+    +      T+  +  
Sbjct: 377 VEETFPEGKPLTNTKVLLIGKLSK-NKDEVKTLIEGLGGKVAGSAHKANLCISTNKEV-- 433

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +    K+E+ +   V++++ + FL  ++   +
Sbjct: 434 EKMSKKMEEVKAANVRVVS-DDFLKEVESGKS 464


>gi|262283367|ref|ZP_06061133.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262260858|gb|EEY79558.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 77

 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLE---KAQQLG--V 706
           + R++A  ++T+ GA+V   +S +T I++ G         D    K E   K  + G  +
Sbjct: 1   MTRNEAVAFLTERGAIVQGYVSAQTQILVAGHKQLDLFKPDRRSKKYEAVLKRLEEGQEI 60

Query: 707 KIMNEEQFLFLLQQYNT 723
            I++EE F  ++++   
Sbjct: 61  TILSEESFFTIVKESQD 77


>gi|159479234|ref|XP_001697698.1| hypothetical protein CHLREDRAFT_150878 [Chlamydomonas reinhardtii]
 gi|158274066|gb|EDO99850.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1001

 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 651 KLVFTGT-LQKIQRHKAQEYVTQLGAVVSAI-LSRKTDIIIVGDN----PGSKLEKAQQL 704
           K+V TG+     +R   + +  +LGA  S   + RKT  ++  D       +K  KA + 
Sbjct: 20  KVVITGSGFSTDEREVIRAWAQRLGAGYSGDLVCRKTTHLVSKDLLKQYASAKYYKALEW 79

Query: 705 GVKIMN 710
           G+ I++
Sbjct: 80  GIAIVS 85


>gi|254166800|ref|ZP_04873654.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|289596077|ref|YP_003482773.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|197624410|gb|EDY36971.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|289533864|gb|ADD08211.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
          Length = 221

 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 22/161 (13%)

Query: 469 LERLKHFVSRDAFNIEG-LGKQQLDFFFKSEDPAFS---IRIPADIFTLQRRQQTSTTKI 524
            E + H + R A  I G +G +     F       +   I+   DI         +  + 
Sbjct: 71  QEVMGHKIRRRALLIHGYMGDEISLSSFGWNHIMGAYMEIQYRYDIPIFHAEDDDALAEF 130

Query: 525 ------ENILGFGDVSVTNLYDSINKRRNISLERF-IFSLG-IRHVGAEIARSLAKYYLS 576
                     G  +      +  I  +R +S E + I++L  + ++G +IA++L +++ S
Sbjct: 131 FRILIKRETEGKNEGEFERKWMRIPPKRVMSDEEWKIYALSSLPYIGEKIAKALLEHFGS 190

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            +  A+           + + L +V  +GD  A+ I   + 
Sbjct: 191 IEKIARA----------NIVELKKVEGIGDKKARQIYRIFH 221


>gi|315042145|ref|XP_003170449.1| S-M checkpoint control protein rad4 [Arthroderma gypseum CBS
           118893]
 gi|311345483|gb|EFR04686.1| S-M checkpoint control protein rad4 [Arthroderma gypseum CBS
           118893]
          Length = 819

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
                 +  TG      R   ++ V+  G      L++    ++     G+K + A Q G
Sbjct: 107 TFFGLSICITGFEDTGFRSHLEKTVSANGGEFRRDLTKAVTHLVARTCEGNKYKFAIQWG 166

Query: 706 VKIMN 710
           VK+++
Sbjct: 167 VKVVS 171


>gi|32471191|ref|NP_864184.1| O-linked GlcNAc transferase [Rhodopirellula baltica SH 1]
 gi|32396893|emb|CAD71861.1| probable O-linked GlcNAc transferase [Rhodopirellula baltica SH 1]
          Length = 508

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
           +       +  +  ++++  G L  + R +A   +   GAVV    +   D I++G    
Sbjct: 64  VPEDASLPADALSGRRMLIVGRLGGMNRREATNLLRSYGAVVVESEASSVDCIVIGAEES 123

Query: 696 S-----KLEKAQQ-----LGVKIMNEEQF---LFLLQQYNTTLRIHDD 730
                  +EKA +       V+I++E      L L+    +  ++H  
Sbjct: 124 PLAEAELIEKATERRGDDSDVQILHETDLWQQLGLVDAEQSIRKLHTP 171


>gi|327278529|ref|XP_003224014.1| PREDICTED: DNA topoisomerase 2-binding protein 1-like [Anolis
           carolinensis]
          Length = 1055

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
                +  TG L    R + Q   T+ G   +  L       +IV +  G K E A++  
Sbjct: 198 FFGCTVCVTG-LSSTDRKEVQRLTTENGGQYTGQLKLNECTHLIVQEPKGQKYECARRWN 256

Query: 706 VKIMNEEQFLFLLQQY 721
           +  ++ + F   +++ 
Sbjct: 257 IHCVSMQWFFDSIEKG 272


>gi|330794872|ref|XP_003285500.1| hypothetical protein DICPUDRAFT_149388 [Dictyostelium purpureum]
 gi|325084503|gb|EGC37929.1| hypothetical protein DICPUDRAFT_149388 [Dictyostelium purpureum]
          Length = 1066

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 15/86 (17%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI----------LSRKTDIIIVGD 692
            S+ +    + F GTL     +  Q  V + G                ++ KT+      
Sbjct: 905 SSNILSGMVIGFAGTLSS-THYVLQNLVNKHGGSYIGNSTNVVGCTHLVTNKTEY----T 959

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           N GSK+  A  L V I++E      +
Sbjct: 960 NNGSKISSANSLKVPIVSETWLYKTI 985


>gi|327262609|ref|XP_003216116.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 3 [Anolis
           carolinensis]
          Length = 1010

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691
           +P I          + + K++  G L K  + + +  + +LG  V+A ++R  ++ I   
Sbjct: 372 TPVIENSTTPADKPLNSMKILVLGKLSK-NKDEIKSAIEELGGKVTATVNRA-NLCISSQ 429

Query: 692 ---DNPGSKLEKAQQLGVKIMNEEQFLF 716
              D    K+E+ +Q  V++++E +FL 
Sbjct: 430 KEIDKMNKKMEEVKQGQVRVVSE-EFLQ 456


>gi|327262605|ref|XP_003216114.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 1 [Anolis
           carolinensis]
          Length = 1006

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691
           +P I          + + K++  G L K  + + +  + +LG  V+A ++R  ++ I   
Sbjct: 368 TPVIENSTTPADKPLNSMKILVLGKLSK-NKDEIKSAIEELGGKVTATVNRA-NLCISSQ 425

Query: 692 ---DNPGSKLEKAQQLGVKIMNEEQFLF 716
              D    K+E+ +Q  V++++E +FL 
Sbjct: 426 KEIDKMNKKMEEVKQGQVRVVSE-EFLQ 452


>gi|39970665|ref|XP_366723.1| hypothetical protein MGG_02799 [Magnaporthe oryzae 70-15]
 gi|149210141|ref|XP_001522445.1| hypothetical protein MGCH7_ch7g552 [Magnaporthe oryzae 70-15]
 gi|86196507|gb|EAQ71145.1| hypothetical protein MGCH7_ch7g552 [Magnaporthe oryzae 70-15]
 gi|145017387|gb|EDK01750.1| hypothetical protein MGG_02799 [Magnaporthe oryzae 70-15]
          Length = 428

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           +++    +  TG L    R      V ++GA +   +   T   +  +  G + EKA ++
Sbjct: 166 TDLSGITIT-TGILPASMREGLAAAVERIGAKMVDSVRIDTTHFVTTEGRGIQWEKAVEM 224

Query: 705 GVKIM 709
            + ++
Sbjct: 225 NIPVV 229


>gi|221105672|ref|XP_002169337.1| PREDICTED: similar to epithelial cell transforming sequence 2
           oncogene [Hydra magnipapillata]
          Length = 769

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 4/179 (2%)

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                +SI+ +   +  RF   +     G    R L+ ++      A    ++I  + D 
Sbjct: 516 AEQCGESIHAKFKPTWTRFKRQIEHSEHGD---RLLSAHFSPEYTVADSKESLINLSEDK 572

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
                          + + +          +  L  +            +  +    + F
Sbjct: 573 QKYFFICASFSGDEFKYLRKQMCRICGPPFLIYLYNKKRSIPNTTRPLFNGSMFGVAVCF 632

Query: 655 TG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           TG  +++       + V  +G  V    S K   +I     G K + A  LG  IM E+
Sbjct: 633 TGFAVKRESVSHLADLVHYMGGSVRRDFSGKVTHVIANLAQGQKYKAAVNLGRSIMTED 691


>gi|126306928|ref|XP_001368346.1| PREDICTED: similar to poly(ADP-ribose) synthetase [Monodelphis
           domestica]
          Length = 1011

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P            + N K++  G L +  + + +  + +LG  ++         +S K 
Sbjct: 374 APPTVNSSAQPDKPLSNMKILTLGKLSR-NKDEMKATIEELGGKLTGTANKASLCISTKK 432

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           ++    +    K+E+ ++  V++++E+ FL  +     +L+
Sbjct: 433 EV----EKMNKKMEEVKEANVRVVSED-FLKDISASGKSLQ 468


>gi|327262607|ref|XP_003216115.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 2 [Anolis
           carolinensis]
          Length = 1009

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691
           +P I          + + K++  G L K  + + +  + +LG  V+A ++R  ++ I   
Sbjct: 371 TPVIENSTTPADKPLNSMKILVLGKLSK-NKDEIKSAIEELGGKVTATVNRA-NLCISSQ 428

Query: 692 ---DNPGSKLEKAQQLGVKIMNEEQFLF 716
              D    K+E+ +Q  V++++E +FL 
Sbjct: 429 KEIDKMNKKMEEVKQGQVRVVSE-EFLQ 455


>gi|330842107|ref|XP_003293026.1| hypothetical protein DICPUDRAFT_157823 [Dictyostelium purpureum]
 gi|325076680|gb|EGC30447.1| hypothetical protein DICPUDRAFT_157823 [Dictyostelium purpureum]
          Length = 498

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---NPG 695
            +   S+  EN   VF  T+   ++ +  + + + G       ++ T +I   +      
Sbjct: 19  EDHLNSNIFENLAFVFDKTINLKRKTELIKIIKKNGGKSCYSCTKATHLISTKEGYLEKT 78

Query: 696 SKLEKAQQLGVKIM 709
            K+E+A  LG+ I+
Sbjct: 79  QKVEQALSLGIPIL 92


>gi|145322928|ref|NP_001030806.2| unknown protein [Arabidopsis thaliana]
 gi|49823530|gb|AAT68748.1| hypothetical protein At3g43930 [Arabidopsis thaliana]
 gi|332644325|gb|AEE77846.1| BRCT domain-containing DNA repair protein [Arabidopsis thaliana]
          Length = 444

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                        +  TG L K  R + +E   +LG   SA+L      ++V +  G K 
Sbjct: 49  PPVRSDGPFSGLIICVTG-LSKEARKQVKEATERLGGEYSALLHSLCTHLVVQNYDGRKF 107

Query: 699 EKAQQLG 705
           E A + G
Sbjct: 108 EHALKHG 114


>gi|145339101|ref|NP_189979.3| unknown protein [Arabidopsis thaliana]
 gi|49823526|gb|AAT68746.1| hypothetical protein At3g43930 [Arabidopsis thaliana]
 gi|332644324|gb|AEE77845.1| BRCT domain-containing DNA repair protein [Arabidopsis thaliana]
          Length = 502

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                        +  TG L K  R + +E   +LG   SA+L      ++V +  G K 
Sbjct: 49  PPVRSDGPFSGLIICVTG-LSKEARKQVKEATERLGGEYSALLHSLCTHLVVQNYDGRKF 107

Query: 699 EKAQQLG 705
           E A + G
Sbjct: 108 EHALKHG 114


>gi|49823528|gb|AAT68747.1| hypothetical protein At3g43930 [Arabidopsis thaliana]
          Length = 363

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                        +  TG L K  R + +E   +LG   SA+L      ++V +  G K 
Sbjct: 49  PPVRSDGPFSGLIICVTG-LSKEARKQVKEATERLGGEYSALLHSLCTHLVVQNYDGRKF 107

Query: 699 EKAQQLG 705
           E A + G
Sbjct: 108 EHALKHG 114


>gi|53717785|ref|YP_106771.1| hypothetical protein BPSL0143 [Burkholderia pseudomallei K96243]
 gi|167813658|ref|ZP_02445338.1| hypothetical protein Bpse9_00884 [Burkholderia pseudomallei 91]
 gi|254183961|ref|ZP_04890552.1| hypothetical protein BURPS1655_F0135 [Burkholderia pseudomallei
           1655]
 gi|52208199|emb|CAH34130.1| hypothetical phage protein [Burkholderia pseudomallei K96243]
 gi|184214493|gb|EDU11536.1| hypothetical protein BURPS1655_F0135 [Burkholderia pseudomallei
           1655]
          Length = 166

 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVV-SAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
           ++FTG     QR + +   T+ G  V  + ++R    + +G N G +K+++A++ G  I+
Sbjct: 90  ILFTG-FPAAQRAEMEALATEAGLYVRKSGVTRGLTFLCIGPNAGPAKVKQAREQGTYIV 148

Query: 710 NEEQFLFLLQ 719
               F  L++
Sbjct: 149 PATHFDVLIE 158


>gi|123417461|ref|XP_001305118.1| virulent strain associated lipoprotein [Trichomonas vaginalis G3]
 gi|121886617|gb|EAX92188.1| virulent strain associated lipoprotein, putative [Trichomonas
           vaginalis G3]
          Length = 884

 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           E +  +GAV S  L++K   +I     GSK E A + G+ +++ +  
Sbjct: 363 EGINMIGAVHSKNLTKKVSYLIANKQSGSKYEMALKWGITVVSVDAL 409


>gi|260810538|ref|XP_002600021.1| hypothetical protein BRAFLDRAFT_120627 [Branchiostoma floridae]
 gi|229285305|gb|EEN56033.1| hypothetical protein BRAFLDRAFT_120627 [Branchiostoma floridae]
          Length = 775

 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
               + +  TG + +  R   +  ++  GA  +   SR   ++I     G K +KA +  
Sbjct: 405 PCNGQIIAVTGFVDQ-DRENLKMMISLAGAKYTGSFSRFNTVLICKRPEGEKHKKALEWR 463

Query: 706 VKIMNEEQFLFLL 718
              +N +    ++
Sbjct: 464 TPCLNVQWLSDII 476


>gi|260820317|ref|XP_002605481.1| hypothetical protein BRAFLDRAFT_126794 [Branchiostoma floridae]
 gi|229290815|gb|EEN61491.1| hypothetical protein BRAFLDRAFT_126794 [Branchiostoma floridae]
          Length = 768

 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
               + +  TG + +  R   +  ++  GA  +   SR   ++I     G K +KA +  
Sbjct: 398 PCNGQIIAVTGFVDQ-DRENLKMMISLAGAKYTGSFSRFNTVLICKRPEGEKHKKALEWR 456

Query: 706 VKIMNEEQFLFLL 718
              +N +    ++
Sbjct: 457 TPCLNVQWLSDII 469


>gi|66815607|ref|XP_641820.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
 gi|60469866|gb|EAL67852.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1317

 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
                +  TG    ++R + +  V + G + S  L+    ++I       K  KA+   +
Sbjct: 232 FFGCLICITG-FTSLERKEIEREVKKGGGMFSGDLNHFCSLLISSGAISEKCVKAEIWSI 290

Query: 707 KIMNEEQFLFLLQQY 721
            ++  + F   +Q  
Sbjct: 291 PVVTIDWFRATIQSG 305


>gi|298714890|emb|CBJ27646.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1552

 Score = 42.7 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL-SRKTDIIIVGDNPGSKLEKA 701
             E  ++  TG L   ++ + +  +   G      + +R T  ++  +  G K E A
Sbjct: 92  PFEGLRITITG-LSMDRKAELRAMIESGGGEYMGAMEARNTTHLVAEEATGMKYEAA 147



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLGVKIMN 710
           +  TG     +R   +  + ++GA +   L ++ T  ++  +  G K E+A Q GV ++ 
Sbjct: 862 IAVTG-FVGAERAGWELLIQRMGATMCKNLKKRVTTHLVCKEAKGEKFERAIQWGVPVVT 920

Query: 711 EEQFLFLLQQYN 722
              +L    ++ 
Sbjct: 921 -AGWLLRCAEHG 931


>gi|242205780|ref|XP_002468747.1| predicted protein [Postia placenta Mad-698-R]
 gi|220732132|gb|EED85970.1| predicted protein [Postia placenta Mad-698-R]
          Length = 925

 Score = 42.7 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA-- 666
           A+      +     C  E  +  +  ++      +   +   +L+   +   + + +A  
Sbjct: 507 AERKKYRTECWLERCIYEERVCSLEENVVFRPLKIVLPVPGAELIV-LSFSGLDQSEACW 565

Query: 667 -QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
               +  +GA V+   SR++  ++     G K EKA++  + I++   ++  + ++ 
Sbjct: 566 VTRLMRAIGAHVAPNFSRRSTHLLCPSAMGPKAEKAREWCIPIVDMA-WIAAIAKHG 621


>gi|327537564|gb|EGF24281.1| O-linked GlcNAc transferase [Rhodopirellula baltica WH47]
          Length = 486

 Score = 42.7 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
           +       +  +  ++++  G L  + R +A   +   GAVV    +   D I++G    
Sbjct: 42  VPEDASLPADALSGRRMLIVGRLGGMNRREATNLLRSYGAVVVESEASSVDCIVIGAEES 101

Query: 696 S-----KLEKAQQ-----LGVKIMNEEQF---LFLLQQYNTTLRIHDD 730
                  +EKA +       V+I++E      L L+    +  ++H  
Sbjct: 102 PLAEAELIEKATERRGDDSDVQILHETDLWQQLGLVDAEQSIRKLHTP 149


>gi|50546935|ref|XP_500937.1| YALI0B15576p [Yarrowia lipolytica]
 gi|49646803|emb|CAG83188.1| YALI0B15576p [Yarrowia lipolytica]
          Length = 945

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           + NK +  T       R    E +  LGA  +   S   D ++ G   G K + A+   V
Sbjct: 400 LTNKVISIT-NYYGDGRAYLIELIETLGAKYTRDFSTTNDFLVAGVPEGGKYQAARLWNV 458

Query: 707 KIMN 710
            ++N
Sbjct: 459 HVIN 462


>gi|326473445|gb|EGD97454.1| hypothetical protein TESG_04863 [Trichophyton tonsurans CBS 112818]
          Length = 821

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 621 NICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
            + AV +   +   +       +          +  TG      R   ++ V   GA   
Sbjct: 80  WVEAVRSSWIQGGNTDIHALEAEYKLPTFFGLSVCITGFEDSDFRSHLEKTVCAHGAEFR 139

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             L++    +I     G+K + A Q G+K+++ +     +++
Sbjct: 140 RDLTKAVTHLIAFACEGNKYQFAIQWGIKVVSLKWLEDSIER 181


>gi|308499697|ref|XP_003112034.1| CRE-MUS-101 protein [Caenorhabditis remanei]
 gi|308268515|gb|EFP12468.1| CRE-MUS-101 protein [Caenorhabditis remanei]
          Length = 1198

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRHKAQE 668
           V+  +        E     +          V+S      E  ++  T ++    R    +
Sbjct: 193 VKLMRKEWVEELWETSQTTMGKFSALSRDAVNSYRLRVFEGLEMAIT-SIDGTDRANLMQ 251

Query: 669 YVTQLGAVVSAILSR-KTDIIIVGDNPGSKLEKAQQLG-VKIM 709
            V + G  V   +S+ +   +I     G K  KA +   +KI+
Sbjct: 252 LVEEHGGKVYGNMSKPRCTHLISDKTSGKKYTKAVEWKTIKIV 294


>gi|167574166|ref|ZP_02367040.1| Transposase and inactivated derivatives-like protein [Burkholderia
           oklahomensis C6786]
          Length = 203

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 72/205 (35%), Gaps = 18/205 (8%)

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL--YDSINKRRNISLE 551
           +   +          D  T Q+       ++ + +     S      + +I K    ++ 
Sbjct: 10  WINIDIHGIDETTVKDAPTFQQIYAAMLDRLRDQVVVSHTSFDRTALFQAIAKHNLTAVS 69

Query: 552 -RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV---GDI 607
            +++ S          AR + + +  +      + N+       + +   V      G++
Sbjct: 70  CQWLDS----------ARVVRRAWAQWSRAGYGLTNVCNTLGISFTAHDAVEDARAAGEV 119

Query: 608 IAQAIVE-FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           + QAI          +  V   +   S      + N    +  +++VFTGTL  ++R +A
Sbjct: 120 LLQAIRTTGVGLDTWMTRVHQPIDASSAKPIAMKGNPDGVLAGEEMVFTGTLTLLRR-EA 178

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVG 691
                  G  V A + + T +++VG
Sbjct: 179 AALAAMAGCDVVASVRKTTTLLVVG 203


>gi|169841229|ref|ZP_02874342.1| hypothetical protein cdivTM_29018 [candidate division TM7
          single-cell isolate TM7a]
          Length = 32

 Score = 42.3 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 3/33 (9%)

Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           P+L      + P  ++G ++     KV H   
Sbjct: 3  NPELITI---DSPTQRVGNKLLDGFQKVRHQRR 32


>gi|281206558|gb|EFA80744.1| calmodulin-binding protein [Polysphondylium pallidum PN500]
          Length = 1018

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---- 692
           G   + VS+  E    V   ++   ++    + + + G       S K+  +I       
Sbjct: 221 GELNQMVSNIFEGFAFVIDLSINLKRKMDLVKIIKRNGGKSCYSCSPKSTHLITTQQGFI 280

Query: 693 NPGSKLEKAQQLGVKIM 709
           +  +K+++A  LG+ I+
Sbjct: 281 DNTAKVQQAITLGIPIL 297


>gi|170053161|ref|XP_001862547.1| poly [Culex quinquefasciatus]
 gi|167873802|gb|EDS37185.1| poly [Culex quinquefasciatus]
          Length = 1000

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----D 692
               K     + N + V  G  +  +  + ++ + +LG  V+  ++     II      +
Sbjct: 381 EPKIKREKPPLYNLEFVILGKTETPK-DQLKDKILKLGGKVTTKITNTIAAIISTPAEVE 439

Query: 693 NPGSKLEKAQQLGVKIMNEE 712
             GS++++A+ + ++++ E+
Sbjct: 440 RMGSRMQEAKDMQIQVVPED 459


>gi|331229715|ref|XP_003327523.1| hypothetical protein PGTG_09057 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309306513|gb|EFP83104.1| hypothetical protein PGTG_09057 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1291

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 11/193 (5%)

Query: 547 NISLERFIFSLGIRHVGAEIAR--SLAKYYLSYQNFAQEINNIIAHNNDD-WLSLIRVPL 603
             +L R I  LG +       +   L K     +      N      N D  +S  +   
Sbjct: 407 RRTLSRRIEELGAKVFDGGDMKLTKLDKVRSDAKLLKDATNAEENLKNSDIVISWDQGKK 466

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQ 662
           +G +    I+    N  +         E           +S  + E+K +  T       
Sbjct: 467 IGTL--HWILCILNNLDSPTFAIRPPTERLLDFPCPPGPISGCDPESKPITVT-NYAGAA 523

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN----EEQFLFLL 718
           R    + + ++    S  L + T +++  +  GSK++ A + G++I+N    E+ F    
Sbjct: 524 RAHLIKLIEKMHMTFSGALDQNTFMVVAANKAGSKVDFANKSGIQIVNHHYIEDCFQNWS 583

Query: 719 QQYNTTLRIHDDD 731
           +Q   T  +   D
Sbjct: 584 KQSIQTHHLTFPD 596


>gi|254168497|ref|ZP_04875341.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|197622552|gb|EDY35123.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
          Length = 221

 Score = 42.3 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 22/161 (13%)

Query: 469 LERLKHFVSRDAFNIEG-LGKQQLDFFFKSEDPAFS---IRIPADIFTLQRRQQTSTTKI 524
            E + H + R A  I G +G +     F       +   I+   DI         +  + 
Sbjct: 71  QEVMAHKIRRRALLIHGYMGDEISLSSFGWNHIMGAYMEIQYRYDIPIFHAEDDDALAEF 130

Query: 525 ------ENILGFGDVSVTNLYDSINKRRNISLERF-IFSLG-IRHVGAEIARSLAKYYLS 576
                     G  +      +  I  +R +S E + I++L  + ++G +IA++L +++ S
Sbjct: 131 FRILIKRETEGKNEGEFERKWMRIPPKRVMSDEEWKIYALSSLPYIGEKIAKALLEHFGS 190

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            +  A+           + + L +V  +G+  A+ I   + 
Sbjct: 191 IEKIARA----------NIVELKKVEGIGNKKARQIYRIFH 221


>gi|153952796|ref|YP_001393561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium kluyveri DSM
           555]
 gi|219853461|ref|YP_002470583.1| hypothetical protein CKR_0118 [Clostridium kluyveri NBRC 12016]
 gi|189028986|sp|A5N4I2|MURC_CLOK5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765992|sp|B9DY44|MURC_CLOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146345677|gb|EDK32213.1| MurC [Clostridium kluyveri DSM 555]
 gi|219567185|dbj|BAH05169.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 457

 Score = 42.3 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVV-----SAILSRKTDIIIVGDNPGSK----LEK 700
           K    +G+   ++  +A E +   GA V     S  ++   D+++      SK    L K
Sbjct: 31  KGFKVSGS--DVKSSEATERLELKGAKVYIGQISQNITSDIDLVVY-TAAISKNNEELLK 87

Query: 701 AQQLGVKIMNEEQFL-FLLQQYNTTLRIHDD 730
           A+ L + +M+  +FL  +++ +   + +   
Sbjct: 88  AKDLNIPLMDRAEFLGEIMKGHKYNIAVSGT 118


>gi|307207165|gb|EFN84955.1| Poly [ADP-ribose] polymerase [Harpegnathos saltator]
          Length = 983

 Score = 42.3 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----D 692
           G   +     ++N + V  G ++K  R + ++ +  LG  V   + +    +I      +
Sbjct: 364 GPKVQGKPRPLKNMQFVILGRIEK-DREELKKDILLLGGTVGTKIHKDLAAVISNPKEVE 422

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
               ++E  + L + ++ E  F+   ++Y   
Sbjct: 423 KMSKRMEDVKALDIHVITEN-FVEEAKEYTDA 453


>gi|326480332|gb|EGE04342.1| BRCT domain-containing protein [Trichophyton equinum CBS 127.97]
          Length = 795

 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
                 +  TG      R   ++ V   GA     L++    +I     G+K + A Q G
Sbjct: 107 TFFGLSVCITGFEDSDFRSHLEKTVCAHGAEFRRDLTKAVTHLIAFACEGNKYQFAIQWG 166

Query: 706 VKIMNEEQFLFLLQQ 720
           +K+++ +     +++
Sbjct: 167 IKVVSLKWLEDSIER 181


>gi|330920911|ref|XP_003299202.1| hypothetical protein PTT_10147 [Pyrenophora teres f. teres 0-1]
 gi|311327216|gb|EFQ92702.1| hypothetical protein PTT_10147 [Pyrenophora teres f. teres 0-1]
          Length = 665

 Score = 42.3 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKAQ 702
           +    +  +G      +   Q  +T LGA  ++ ++  T  +I  +       +K+  A 
Sbjct: 16  LSGCNIATSGRFSGTSQAAVQSRLTSLGASTASSVTPDTTHLIATEKDYESNSTKVNAAA 75

Query: 703 QLGVKIMNEEQF 714
             GV ++  E  
Sbjct: 76  THGVPVVTLEWL 87


>gi|163797452|ref|ZP_02191403.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
 gi|159177201|gb|EDP61760.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
          Length = 713

 Score = 42.3 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 17/129 (13%)

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
              F   S     D I K        ++ S  IR +G   AR + K +            
Sbjct: 56  KARFMRTSAPTSIDGIEK--------YLGSGMIRGIGPVYARKMVKAFG---------EK 98

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
           +      +   L  V  +G + A+ I + +   + +  +   L        R  +   + 
Sbjct: 99  VFDIIEAEPERLREVTGIGQVRAKRITDAWAEQKIVREIMVFLHSHGVGTARAVRIYKTY 158

Query: 647 IENKKLVFT 655
             +   V T
Sbjct: 159 GADAVQVMT 167


>gi|330840212|ref|XP_003292113.1| hypothetical protein DICPUDRAFT_82744 [Dictyostelium purpureum]
 gi|325077667|gb|EGC31365.1| hypothetical protein DICPUDRAFT_82744 [Dictyostelium purpureum]
          Length = 473

 Score = 42.3 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---NP 694
              +  S+  EN   VF  T+   ++++  + + + G       ++ T +I   +     
Sbjct: 22  EKNQINSNIFENCAFVFDKTINLKRKNQLIKIIKKNGGKSCYSCTKDTHLITTKEGYLEK 81

Query: 695 GSKLEKAQQLGVKIM 709
             K+E+A  LG+ I+
Sbjct: 82  TQKVEQALSLGIPIL 96


>gi|242218013|ref|XP_002474801.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726049|gb|EED80012.1| predicted protein [Postia placenta Mad-698-R]
          Length = 925

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA---QEYVTQLGA 675
               C  E  +  +  ++      +   +   +L+   +   + + +A      +  +GA
Sbjct: 517 WLERCIYEERVCSLEENVVFRPLKIVLPVPGAELIV-LSFSGLDQSEACWVTRLMRAIGA 575

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            V+   SR++  ++     G K EKA++  + I++   ++  + ++ 
Sbjct: 576 HVAPNFSRRSTHLLCPSAMGPKAEKAREWCIPIVDMA-WIAAIAKHG 621


>gi|260907599|ref|ZP_05915921.1| DNA polymerase III, epsilon subunit [Brevibacterium linens BL2]
          Length = 65

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQQLGVKIMNEEQFLFLL 718
           TQ G VV   +++K D+++  D      K  KA++ G+ I++E Q    L
Sbjct: 2   TQAGFVVHPAVTKKVDLVMAEDEDSLSGKARKARKYGIPILSEVQMENYL 51


>gi|74142035|dbj|BAE41080.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+           + N K++  G L +  + +A+  + +LG  ++         +S K 
Sbjct: 377 APTAVNSSAPADKPLSNMKILTLGKLSQ-NKDEAKAVIEKLGGKLTGSANKASLCISTKK 435

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ +   V+++ E+ FL 
Sbjct: 436 EV----EKMSKKMEEVKAANVRVVCED-FLQ 461


>gi|229489161|ref|ZP_04383027.1| 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase [Rhodococcus
           erythropolis SK121]
 gi|229324665|gb|EEN90420.1| 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase [Rhodococcus
           erythropolis SK121]
          Length = 264

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 21/86 (24%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ- 703
           + +E K +V TG    I R  AQ      GA V          ++   +P    E A   
Sbjct: 2   NRLEGKNVVITGAASGIGRAAAQLMA-AEGAKV----------LVADLDPARAEEAAVAI 50

Query: 704 ---------LGVKIMNEEQFLFLLQQ 720
                     GV +MNE+    ++++
Sbjct: 51  RETGGNAMGFGVDVMNEDSLAAMIEK 76


>gi|219119748|ref|XP_002180627.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408100|gb|EEC48035.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 512

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA--ILSRKTDIIIVGDN 693
                   S  ++   +  TG +   ++ +  E +  LG + +    +S+ T  +I  D 
Sbjct: 17  APVKSDRSSGPLKGAVICLTG-IDPEEKDQYHEMIVDLGGIYTRDLDVSKNT-HLIAVDP 74

Query: 694 PGSKLEKAQQL-GVKIMNEEQF------LFLLQQYNTTLRIH 728
            G+K E A+    ++I+             L+ +   +L + 
Sbjct: 75  VGAKYETAKTTSSIRIVQPAWLESCFGNRALIDELKYSLDLP 116


>gi|20806109|ref|NP_031441.2| poly [ADP-ribose] polymerase 1 [Mus musculus]
 gi|15080598|gb|AAH12041.1| Poly (ADP-ribose) polymerase family, member 1 [Mus musculus]
 gi|26326859|dbj|BAC27173.1| unnamed protein product [Mus musculus]
 gi|26353740|dbj|BAC40500.1| unnamed protein product [Mus musculus]
 gi|148681205|gb|EDL13152.1| poly (ADP-ribose) polymerase family, member 1 [Mus musculus]
          Length = 1014

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+           + N K++  G L +  + +A+  + +LG  ++         +S K 
Sbjct: 377 APTAVNSSAPADKPLSNMKILTLGKLSQ-NKDEAKAVIEKLGGKLTGSANKASLCISTKK 435

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ +   V+++ E+ FL 
Sbjct: 436 EV----EKMSKKMEEVKAANVRVVCED-FLQ 461


>gi|74198526|dbj|BAE39743.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+           + N K++  G L +  + +A+  + +LG  ++         +S K 
Sbjct: 377 APTAVNSSAPADKPLSNMKILTLGKLSQ-NKDEAKAVIEKLGGKLTGSANKASLCISTKK 435

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ +   V+++ E+ FL 
Sbjct: 436 EV----EKMSKKMEEVKAANVRVVCED-FLQ 461


>gi|74144748|dbj|BAE27352.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+           + N K++  G L +  + +A+  + +LG  ++         +S K 
Sbjct: 377 APTAVNSSAPADKPLSNMKILTLGKLSQ-NKDEAKAVIEKLGGKLTGSANKASLCISTKK 435

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ +   V+++ E+ FL 
Sbjct: 436 EV----EKMSKKMEEVKAANVRVVCED-FLQ 461


>gi|74141622|dbj|BAE38574.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+           + N K++  G L +  + +A+  + +LG  ++         +S K 
Sbjct: 377 APTAVNSSAPADKPLSNMKILTLGKLSQ-NKDEAKAVIEKLGGKLTGSANKASLCISTKK 435

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ +   V+++ E+ FL 
Sbjct: 436 EV----EKMSKKMEEVKAANVRVVCED-FLQ 461


>gi|163797183|ref|ZP_02191137.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
 gi|159177478|gb|EDP62032.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
          Length = 496

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 17/129 (13%)

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
              F   S     D I K        ++ S  IR +G   AR L K +            
Sbjct: 56  KARFMRTSAPTSIDGIEK--------YLGSGMIRGIGPVYARKLVKAFG---------EK 98

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
           +          L  V  +G + A+ I + +   + +  +   L        R  +   + 
Sbjct: 99  VFDVIEAAPARLREVTGIGQVRAKRITDAWAEQKIVREIMVFLHSHGVGTARAVRIYKTY 158

Query: 647 IENKKLVFT 655
             +   V T
Sbjct: 159 GADAVQVMT 167


>gi|19074051|ref|NP_584657.1| similarity to RAD4 protein [Encephalitozoon cuniculi GB-M1]
 gi|19068693|emb|CAD25161.1| similarity to RAD4 protein [Encephalitozoon cuniculi GB-M1]
          Length = 553

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
            NI  +   +  +  +    +K   +  E        T+ +I       Y   LGA  + 
Sbjct: 66  WNIRIL--HIGWLYNTDESTKKYEMAPFEGSNF----TISEISDDSLVNYHCLLGASFTE 119

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            L+  TD ++       K E  ++ G+ I+  E
Sbjct: 120 NLTVSTDFVVTNLKSSDKAEFCEKHGIPIITSE 152


>gi|328773391|gb|EGF83428.1| hypothetical protein BATDEDRAFT_36503 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 257

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 656 GTLQKIQR-HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           G+L K        E + ++GA  +  L+     ++     G K E+A +L + I+   +F
Sbjct: 178 GSLSKDSDVDTLIELLDRIGAKYTDDLTSDNTHLVCTVPKGPKYERALELNIPIVTP-EF 236

Query: 715 LF 716
           L 
Sbjct: 237 LK 238


>gi|328862593|gb|EGG11694.1| hypothetical protein MELLADRAFT_90918 [Melampsora larici-populina
           98AG31]
          Length = 679

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 4/119 (3%)

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           + WL+      +G    Q I         +                    +S    +K +
Sbjct: 326 EFWLAWESEKSIG--TFQWITALLNITNPLHCRIQSPLARLFDYPIPPGMISGWDPSKNV 383

Query: 653 V-FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           V  T       R      + ++G   S  L   T +++  +  G K+E A +LG+  +N
Sbjct: 384 VSIT-NYTGFSRAWLIRLIEKMGLKYSGPLDCSTSLLLAANKSGKKVEWASELGIPTVN 441


>gi|326434034|gb|EGD79604.1| poly polymerase [Salpingoeca sp. ATCC 50818]
          Length = 1442

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 13/122 (10%)

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           ++VP +   +A       +   +        +  S      +   + E+        G L
Sbjct: 9   VQVPAI---VAIDKSSLVRVECHPEGPAFDHRVPSEDEDEDDVPPNMELMGMTFKLIGAL 65

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSK----LEKAQQLGVKIMN 710
             I R + +  +T  G  V + L RK   +IVG    + P  K    L++A   GV +M 
Sbjct: 66  -AIPRKEFEGVITAHGGAVVSSL-RKCTHVIVGQRELNKPQDKHPQALKEALSSGVAVMR 123

Query: 711 EE 712
           EE
Sbjct: 124 EE 125


>gi|270001468|gb|EEZ97915.1| hypothetical protein TcasGA2_TC000301 [Tribolium castaneum]
          Length = 1209

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 25/98 (25%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA------ILSRKT---DIIIVGD 692
             S+ +EN  +  +G     +R+  +E +  LG            + +       ++  +
Sbjct: 626 CDSAPLENCVVTISG-YSSFERNFLKELIEALGGTSQEQFARVLCVEKNLQASTHLVSFE 684

Query: 693 NPGSKLEKAQQLGVKIMN---------------EEQFL 715
             G K   A + G+ ++                E++FL
Sbjct: 685 ADGKKYAAAVKWGLPVVTKNWLFECAKSGKRVPEDEFL 722


>gi|189234853|ref|XP_001812071.1| PREDICTED: similar to DNA topoisomerase 2-binding protein 1
           [Tribolium castaneum]
          Length = 1222

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 25/98 (25%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA------ILSRKT---DIIIVGD 692
             S+ +EN  +  +G     +R+  +E +  LG            + +       ++  +
Sbjct: 639 CDSAPLENCVVTISG-YSSFERNFLKELIEALGGTSQEQFARVLCVEKNLQASTHLVSFE 697

Query: 693 NPGSKLEKAQQLGVKIMN---------------EEQFL 715
             G K   A + G+ ++                E++FL
Sbjct: 698 ADGKKYAAAVKWGLPVVTKNWLFECAKSGKRVPEDEFL 735


>gi|190348408|gb|EDK40855.2| hypothetical protein PGUG_04953 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 766

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 6/68 (8%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ--- 703
               K+  T       R    + +  LG   +  L+R  D +I G   G K   A +   
Sbjct: 304 FAGLKISIT-NYSGEARTYLAKLIVGLGGEFTKTLTRSNDYLIAGSPHGKKYVTATERWL 362

Query: 704 --LGVKIM 709
              GV  +
Sbjct: 363 DTNGVPTI 370


>gi|146414055|ref|XP_001482998.1| hypothetical protein PGUG_04953 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 766

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 6/68 (8%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ--- 703
               K+  T       R    + +  LG   +  L+R  D +I G   G K   A +   
Sbjct: 304 FAGLKISIT-NYSGEARTYLAKLIVGLGGEFTKTLTRSNDYLIAGSPHGKKYVTATERWL 362

Query: 704 --LGVKIM 709
              GV  +
Sbjct: 363 DTNGVPTI 370


>gi|74214619|dbj|BAE31150.1| unnamed protein product [Mus musculus]
          Length = 973

 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+           + N K++  G L +  + +A+  + +LG  ++         +S K 
Sbjct: 377 APTAVNSSAPADKPLSNMKILTLGKLSQ-NKDEAKAVIEKLGGKLTGSANKASLCISTKK 435

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ +   V+++ E+ FL 
Sbjct: 436 EV----EKMSKKMEEVKAANVRVVCED-FLQ 461


>gi|296816226|ref|XP_002848450.1| BRCT domain-containing protein [Arthroderma otae CBS 113480]
 gi|238841475|gb|EEQ31137.1| BRCT domain-containing protein [Arthroderma otae CBS 113480]
          Length = 827

 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
                 +  TG      R   ++ V++ G      L++    ++     G K + A   G
Sbjct: 107 TFFGLSICITGFENTDFRSHLEKTVSENGGEFRKDLTKTVTHLVARVGEGKKYKFAILWG 166

Query: 706 VKIMN 710
           VK+++
Sbjct: 167 VKVVS 171


>gi|212642079|ref|NP_492743.3| MUS (Drosophila mutagen sensitive) related family member (mus-101)
           [Caenorhabditis elegans]
 gi|193248131|emb|CAA99847.3| C. elegans protein F37D6.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 1182

 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR-KTDIIIVGDNPGSKLEKAQQ 703
            E  ++  T ++    R    + +   G  V   +S+ +   +I     G K  KA +
Sbjct: 230 FEGLEMAIT-SIDGADRTNFIQLIEDHGGKVPGTMSKTRCSYLISDKITGVKYAKAVE 286


>gi|39947634|ref|XP_363029.1| hypothetical protein MGG_08613 [Magnaporthe oryzae 70-15]
 gi|145010234|gb|EDJ94890.1| hypothetical protein MGG_08613 [Magnaporthe oryzae 70-15]
          Length = 733

 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKAQ 702
           +E+  +  +G    + + + ++ +T LG  VS  ++ KT  +I  +       +K++ A 
Sbjct: 28  LEDCVVAISGAFPNLTQAQTKDKITSLGGTVSPSVNNKTTHLITTEQDFLANTTKVKAAT 87

Query: 703 QLGVKIM 709
              + I+
Sbjct: 88  AKDILIV 94


>gi|307202216|gb|EFN81703.1| PAX-interacting protein 1 [Harpegnathos saltator]
          Length = 1368

 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 625  VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
            ++ +    +                + +  +G  +  +R K +  +  LGA  +   SR 
Sbjct: 978  LQLVPPWHALHFPIPFTMSELPCVKQIVSLSG-FEGEERAKVKYMLEALGAKYTNYFSRH 1036

Query: 685  TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              +++     G K +KA++    ++N +    +L
Sbjct: 1037 NTLLVCRRPDGQKYKKAREWQTSVVNAQWLTDIL 1070


>gi|301616685|ref|XP_002937791.1| PREDICTED: DNA topoisomerase 2-binding protein 1 [Xenopus
           (Silurana) tropicalis]
          Length = 1449

 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
                +  TG L  + R + Q   T  G   +  L    +  +IV +  G K E A++  
Sbjct: 199 FRGCTICVTG-LNSLDRKEVQRLTTLHGGEYTGQLKMNESTHLIVQEAKGQKYECARKWN 257

Query: 706 VKIMNEEQFLFLLQQY 721
           V  ++ + F   L + 
Sbjct: 258 VHCVSVQWFFDSLDKG 273


>gi|255536695|ref|YP_003097066.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342891|gb|ACU09004.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium
           3519-10]
          Length = 458

 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 667 QEYVTQLGAVVS----AILSRKTDIIIVG---DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ +   G        + +S KTD+I+V    ++   +++KA++LG+ I+   + L  + 
Sbjct: 51  KDQLEAEGIKCHLQDGSGISEKTDLIVVSTAIEDTVFEVQKARELGIPIVKRSELLAAIA 110

Query: 720 QYNTTLRI 727
           +   T+ +
Sbjct: 111 KSKKTIAV 118


>gi|326926108|ref|XP_003209247.1| PREDICTED: protein ECT2-like [Meleagris gallopavo]
          Length = 883

 Score = 41.9 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 62/207 (29%), Gaps = 21/207 (10%)

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   +   L   +  +       E    L +     +   + +  I       ++    +
Sbjct: 27  VENSKENVLPGSVVDVEEEMPQIETRVVLVQEAGKREELLKALEEIKV----PYIKTNTI 82

Query: 602 PLVGDIIA-----QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-------- 648
             +GD  +       +V  +Q        +A  + + P +  H       +         
Sbjct: 83  EELGDCDSPEFETVFVVTDFQGSIFNNLCKADCRVIGPPVVLHCAQKGEPLPFSCRPLYC 142

Query: 649 ----NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
               N  L FTG  +K +  K    V  +G ++    + K   ++     G K   A  L
Sbjct: 143 ASMLNLVLCFTGFRKKDELVKLVTLVHHMGGIIRKDFNSKVTHLVANSTHGDKFRIAVSL 202

Query: 705 GVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           G  IM  E      ++ N       DD
Sbjct: 203 GTPIMKAEWIYKAWEKRNEMDFCAADD 229


>gi|238883716|gb|EEQ47354.1| hypothetical protein CAWG_05924 [Candida albicans WO-1]
          Length = 727

 Score = 41.9 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                    TG L+   R +  E +  LG +  + L    + +IVGD    K 
Sbjct: 5   PFTGLLFCCTG-LESTTRREVVEKIETLGGIHYSDLMTDVNYLIVGDRDTEKY 56


>gi|68492147|ref|XP_710143.1| hypothetical protein CaO19.9008 [Candida albicans SC5314]
 gi|46431281|gb|EAK90872.1| hypothetical protein CaO19.9008 [Candida albicans SC5314]
          Length = 729

 Score = 41.9 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                    TG L+   R +  E +  LG +  + L    + +IVGD    K 
Sbjct: 5   PFTGLLFCCTG-LESTTRREVVEKIETLGGIHYSDLMTDVNYLIVGDRDTEKY 56


>gi|68342541|ref|XP_710147.1| hypothetical protein CaO19.1434 [Candida albicans SC5314]
 gi|46431286|gb|EAK90876.1| hypothetical protein CaO19.1434 [Candida albicans SC5314]
          Length = 715

 Score = 41.9 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                    TG L+   R +  E +  LG +  + L    + +IVGD    K 
Sbjct: 5   PFTGLLFCCTG-LESTTRREVVEKIETLGGIHYSDLMTDVNYLIVGDRDTEKY 56


>gi|118095280|ref|XP_422790.2| PREDICTED: similar to epithelial cell transforming sequence 2
           oncogene protein [Gallus gallus]
          Length = 883

 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 61/207 (29%), Gaps = 21/207 (10%)

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   +       +  +       E    L +     +   + +  I       ++    +
Sbjct: 27  VENSKENVFPGSVVDVEEEMPQIETRVVLVQEAGKREELLKALEEIKV----PYIKTNTI 82

Query: 602 PLVGDI-----IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-------- 648
             +GD       +  +V  +Q        +A  + + P +  H       +         
Sbjct: 83  EELGDCDSPEFESVFVVTDFQGSIFNNLCKADCRVIGPPVVLHCAQKGEPLPFSCRPLYC 142

Query: 649 ----NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
               N  L FTG  +K +  K    V  +G ++    + K   ++     G K   A  L
Sbjct: 143 ASMLNLVLCFTGFRKKDELVKLVTLVHHMGGIIRKDFNSKVTHLVANSTHGDKFRIAVSL 202

Query: 705 GVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           G  IM  E      ++ N       DD
Sbjct: 203 GTPIMKAEWIYKAWEKRNEIDFCAADD 229


>gi|310800522|gb|EFQ35415.1| BRCA1 C Terminus domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 849

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 16/129 (12%)

Query: 597 SLIRVPLVGDI-IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---- 651
               + +VG++ +  A ++F        A+E   +           ++ +  E K+    
Sbjct: 84  DAKWIDVVGELWMKDADIDF-------AALEREWQLKPLETCSDVTDLENHTEAKRGALL 136

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           L  TG     QR    + +T  G   +  L+++   ++V    G K + A+   ++ ++ 
Sbjct: 137 LCMTGFDDPEQRASIIDKITANGGAYTGDLTKRVSHLLVHKPEGKKYKAARAWNIRTVS- 195

Query: 712 EQFLFLLQQ 720
              L  L+Q
Sbjct: 196 ---LAWLEQ 201


>gi|256074625|ref|XP_002573624.1| topbp1 [Schistosoma mansoni]
 gi|238658808|emb|CAZ29856.1| topbp1, putative [Schistosoma mansoni]
          Length = 1246

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 44/109 (40%), Gaps = 4/109 (3%)

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++      +  ++  +  +   I   +  V        +  +G L   +R +  + V++ 
Sbjct: 164 DWITEAWRLSEIQDPIDMM-LGIYTEKYRVP-IFSQLVICVSG-LSVEERKEVSDLVSKH 220

Query: 674 GAVVSAILS-RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G   S ++   +T  ++     G+K   A++  ++I++ +  +  + + 
Sbjct: 221 GGKYSGVMKIGETTHLVTRQASGTKYVHAKKWKIQIISIKWLIDSVDKG 269


>gi|256074623|ref|XP_002573623.1| topbp1 [Schistosoma mansoni]
 gi|238658807|emb|CAZ29855.1| topbp1, putative [Schistosoma mansoni]
          Length = 1396

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 44/109 (40%), Gaps = 4/109 (3%)

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++      +  ++  +  +   I   +  V        +  +G L   +R +  + V++ 
Sbjct: 164 DWITEAWRLSEIQDPIDMM-LGIYTEKYRVP-IFSQLVICVSG-LSVEERKEVSDLVSKH 220

Query: 674 GAVVSAILS-RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G   S ++   +T  ++     G+K   A++  ++I++ +  +  + + 
Sbjct: 221 GGKYSGVMKIGETTHLVTRQASGTKYVHAKKWKIQIISIKWLIDSVDKG 269


>gi|74197055|dbj|BAE35080.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           +P+           + N K++  G L +  + +A+  + +LG  ++         +S K 
Sbjct: 377 APTTVNSSAPADKPLSNMKILTLGKLSQ-NKDEAKAVIEKLGGKLTGSANKASLCISTKK 435

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ +   V+++ E+ FL 
Sbjct: 436 EV----EKMSKKMEEVKAANVRVVCED-FLQ 461


>gi|302889251|ref|XP_003043511.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256724428|gb|EEU37798.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 765

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 12/104 (11%)

Query: 640 EKNVSSEIENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNP- 694
           ++  SS +    +V +G +    K++  +        GA V   +S++ T +++    P 
Sbjct: 488 DELKSSVLSGLVIVLSGLVPLGVKVEESEIGMQAQSFGAQVLDTVSKRVTHLVVASSRPR 547

Query: 695 GSKLEKAQQL-GVKIMNEEQF------LFLLQQYNTTLRIHDDD 731
             K+++A ++  +KI+N+            L +    L IHD D
Sbjct: 548 TKKVQQAAKIPSIKIVNQNWLTDCLSQWRRLDERPYYLEIHDMD 591


>gi|167583617|ref|YP_001671807.1| NAD-dependent DNA ligase [Enterobacteria phage phiEco32]
 gi|164375455|gb|ABY52863.1| NAD-dependent DNA ligase [Enterobacteria phage phiEco32]
          Length = 109

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +S  +         +++  H   YY    PI  D ++  +      +   +P+
Sbjct: 14 EISPAEVINRH---RRQLIIHSYLYYWLDDPIWSDDKWQQVANDLVELQALYPE 64


>gi|312219647|emb|CBX99590.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1667

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKAQQLGVKIMN 710
           +G      +   Q  +  LGA V+  ++  T ++I  D        K++ A+   + I++
Sbjct: 25  SGKFAGTTQAAVQARIKTLGATVAPSVTADTTLLIATDKDFESNSVKVKAARAHHIPIVS 84

Query: 711 EEQFLFLLQQYNTT 724
               L  L++  +T
Sbjct: 85  ----LSWLEECEST 94


>gi|291464059|gb|ADE05567.1| chitin synthase [Pneumocystis carinii]
 gi|291464061|gb|ADE05568.1| chitin synthase [Pneumocystis carinii]
          Length = 348

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV-VSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +++    +   G L +  + + ++ + ++GA  + + +   T   I     GS+ +KA  
Sbjct: 172 TDLSGITVCV-GELNENDKKELEQTIKRIGARPIQSKVKIDTTHFITSRTSGSEYKKAIS 230

Query: 704 LGVKIMNEE 712
           + + ++  +
Sbjct: 231 MNIPVVTLD 239


>gi|294656307|ref|XP_458570.2| DEHA2D02354p [Debaryomyces hansenii CBS767]
 gi|199431369|emb|CAG86702.2| DEHA2D02354p [Debaryomyces hansenii]
          Length = 647

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 20/49 (40%)

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
               +  + ++  G   +  L+     II  +  G +  KA + G+ ++
Sbjct: 130 FTTERMIQLISDNGGKATDSLTMSNSCIITTEKTGKRYTKAVEWGIPVI 178


>gi|51215619|emb|CAH17878.1| chitin biosynthesis protein (Chi), putative [Pneumocystis carinii]
          Length = 242

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV-VSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +++    +   G L +  + + ++ + ++GA  + + +   T   I     GS+ +KA  
Sbjct: 66  TDLSGITVCV-GELNENDKKELEQTIKRIGARPIQSKVKIDTTHFITSRTSGSEYKKAIS 124

Query: 704 LGVKIMNEE 712
           + + ++  +
Sbjct: 125 MNIPVVTLD 133


>gi|322488603|emb|CBZ23850.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1172

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 14/104 (13%)

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           +E            H  ++   +  K++  TG L  ++R +AQ       A  +++L+R 
Sbjct: 71  IEWATDGACAMESTHRFDIGHGLTGKEVCTTG-LNHLERGRAQAVCGARRATYNSMLTRH 129

Query: 685 TDIIIVGDNPGS-------------KLEKAQQLGVKIMNEEQFL 715
             +++      S             K+  A++ G+ I+  E+F+
Sbjct: 130 CGLLVTAAAALSLTLSSSPPATSNDKVRFARKHGIPIIAMEEFV 173


>gi|281207590|gb|EFA81773.1| BRCT domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1118

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
           +    +  TG      R   ++   + G V +  L++     ++  +  G K + A++ G
Sbjct: 194 LRGCVICLTG-FSGNDRKYIEQLSIEGGGVFAPTLNKNECTHLVASEQSGEKFKMAKEWG 252

Query: 706 VKIMNEEQFLFLLQQ 720
           V I+     L  L++
Sbjct: 253 VYIVP----LQWLEE 263


>gi|327358124|gb|EGE86981.1| RNA Polymerase II CTD phosphatase Fcp1 [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 839

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 652 LVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
           LVF+G L             +    GA +S  +S +T  ++ G N  +K+ +A +   +K
Sbjct: 428 LVFSGVLPLGTDTQNADISLWAKSFGAAISTKISSRTTHLVAGRNRTAKVREATRYPNIK 487

Query: 708 IMNEEQFLFLLQQYN 722
           I+  +  L  + Q+ 
Sbjct: 488 IVTVQWLLDSITQWK 502


>gi|400840|sp|P31669|PARP1_XENLA RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
           AltName: Full=NAD(+) ADP-ribosyltransferase 1;
           Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1
 gi|1334661|emb|CAA78126.1| NAD(+) ADP-ribosyltransferase [Xenopus laevis]
          Length = 998

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR-----KTDIIIVG 691
                     + N K++  G L K  + + +  +  LG  V+    +      T+  +  
Sbjct: 364 VEETFPEGKPLTNTKVLLIGKLSK-NKDEVKTLIEGLGGKVAGSAHKANLCISTNKEV-- 420

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
                K+E+ +   V++++ + FL  ++   +
Sbjct: 421 KKMSKKMEEVKAANVRVVS-DDFLKEVESGKS 451


>gi|239606973|gb|EEQ83960.1| RNA Polymerase II CTD phosphatase Fcp1 [Ajellomyces dermatitidis
           ER-3]
          Length = 901

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 652 LVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
           LVF+G L             +    GA +S  +S +T  ++ G N  +K+ +A +   +K
Sbjct: 500 LVFSGVLPLGTDTQNADISLWAKSFGAAISTKISSRTTHLVAGRNRTAKVREATRYPNIK 559

Query: 708 IMNEEQFLFLLQQYN 722
           I+  +  L  + Q+ 
Sbjct: 560 IVTVQWLLDSITQWK 574


>gi|255956097|ref|XP_002568801.1| Pc21g18060 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590512|emb|CAP96703.1| Pc21g18060 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 610

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA-ILSRKTDIIIVGDNPG 695
            +    ++  ++   +  +GT+   Q  + +  V + GA  ++  +   T ++   +N  
Sbjct: 4   KKPVDKLADNLKGLVIGASGTIPGYQHGEIKRMVEKCGAKFASMNIGDCTHLVTTEENVK 63

Query: 696 SKLEK---AQQL-GVKIMNEEQFLFLLQQ 720
            KL+K   A +L G +I+N +  L  + +
Sbjct: 64  RKLKKIDQADKLEGCQIVNMDWLLQKIAK 92


>gi|327198330|ref|YP_004306904.1| NAD-dependent DNA ligase [Streptococcus phage Dp-1]
 gi|314912632|gb|ADT64023.1| NAD-dependent DNA ligase [Streptococcus phage Dp-1]
          Length = 137

 Score = 41.5 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 2   KKRQLIPIEALSI-EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           +K++ +P     I EQ  + ++  E+++  H   YY ++  II D +YD       ++  
Sbjct: 35  RKKRTVPKPKPKIDEQVVELMNRRERQVLVHSCIYYYFNDSIIADGQYDKWSHELYSLIV 94

Query: 61  AFPDLAR 67
           + PD  R
Sbjct: 95  SHPDEFR 101


>gi|189209141|ref|XP_001940903.1| poly polymerase 2 ADP-ribosyltransferase 2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187976996|gb|EDU43622.1| poly polymerase 2 ADP-ribosyltransferase 2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 666

 Score = 41.5 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKAQ 702
           +    +  +G      +   Q  +T LGA  +  ++  T  +I  +       +K+  A 
Sbjct: 16  LSGYNIATSGRFSGTSQTAVQSRLTALGASTALSVTSDTTHLIATEKDYESNSTKVNAAA 75

Query: 703 QLGVKIMN 710
             GV ++ 
Sbjct: 76  THGVPVVT 83


>gi|86604931|ref|YP_473694.1| excinuclease ABC subunit C [Synechococcus sp. JA-3-3Ab]
 gi|119367850|sp|Q2JXP8|UVRC_SYNJA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|86553473|gb|ABC98431.1| excinuclease ABC, C subunit [Synechococcus sp. JA-3-3Ab]
          Length = 621

 Score = 41.5 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 61/237 (25%), Gaps = 35/237 (14%)

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ---- 467
           +V+D+    R  +A   S         S+VV        +    ++              
Sbjct: 391 EVLDLPEPPRRLEAYDISHIQGSDAVGSQVVFIDGLPAKQHYRRYKIRNPQVRPGHSDDF 450

Query: 468 ------QLERLKHFVSRDAFN---IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
                    R     S D  +   I+G GK QL              +P      +  + 
Sbjct: 451 ASHAEVARRRFSKMTSEDQPDLVLIDG-GKGQLAAVMAVLAELGLDHLPVFALAKREEEI 509

Query: 519 TSTTKIENILGFGDVSVTNLYDSI--NKRR--------NISLERFIFSLG-IRHVGAEIA 567
                 E +          L   +     R           L +    L  I  +G +  
Sbjct: 510 FRPGDPEPLRLPPQDPARLLLQRLRDEAHRFALAYHRQQRKLRQQASVLEEIPGLGKQRQ 569

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
           + L + + S           +A          +VP +G  +A+ I  ++        
Sbjct: 570 KLLMEAFRSLARIQVATEEQLA----------QVPGIGPKLARQIYRYFHPEAETEL 616


>gi|145483719|ref|XP_001427882.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394965|emb|CAK60484.1| unnamed protein product [Paramecium tetraurelia]
          Length = 929

 Score = 41.5 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I  F Q+ RN    E +   ++      H+   S  +E K     G L K  R    + +
Sbjct: 147 IKSFEQDKRNQFEQEHVQVAQIEIEEDSHKNTASLPLEGKSYYILGNLGKYVREDLVKII 206

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSK-------LEKAQQLGVKIMNEEQFLFLL 718
              G      + + T ++        K       L+ AQ+    I++EE F   L
Sbjct: 207 KLYGGFNKCRVLQDTILLQGSLQNNGKSISNSQHLKDAQKYKNLILDEEGFNNYL 261


>gi|325661017|ref|ZP_08149644.1| hypothetical protein HMPREF0490_00376 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472524|gb|EGC75735.1| hypothetical protein HMPREF0490_00376 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 639

 Score = 41.5 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 90/266 (33%), Gaps = 35/266 (13%)

Query: 456 HRCTGGLACSAQQLERLK----HFVSRDAFN---IEGLGKQQLDFFFKSEDPAFSIRIPA 508
           +RC   L    +  +R+      F+  DA +     G+  +++  F K            
Sbjct: 190 NRCRFPLEVIDELRKRMPEGMPLFIRIDAQDDLLENGMSIEEVIRFCKIAKEHGV----- 244

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D+  + R    +   +  +      +  N+ ++   R+          +    VG     
Sbjct: 245 DVLDVSRGNIITAASMYEVPPIDVPNAFNVENAARIRKET-------GMVTVGVGRINTA 297

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR---VPLVGDII--AQAIVEFYQNPRNIC 623
           +LA+  ++       +       + ++ +  +   V  +   +   Q   + + +  N  
Sbjct: 298 ALAEELIADDKVDMVVMGRAQLADPEFANKAKEGHVEDIVHCVGCNQGCYDGFCDVANRP 357

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIEN--KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
            +       +P IG   +      E+  K  V  G +  +   +A + + + G  V+   
Sbjct: 358 HI---TCMRNPMIGHEAEYTLDPAEHTKKVWVIGGGVAGM---EAAQILHKRGHQVTVFE 411

Query: 682 SRKT---DIIIVGDNPGSKLEKAQQL 704
           +  T   + ++ G+ PG    KA  L
Sbjct: 412 AADTLGGEFLLAGEAPGKGEMKAAAL 437


>gi|261194090|ref|XP_002623450.1| RNA Polymerase II CTD phosphatase Fcp1 [Ajellomyces dermatitidis
           SLH14081]
 gi|239588464|gb|EEQ71107.1| RNA Polymerase II CTD phosphatase Fcp1 [Ajellomyces dermatitidis
           SLH14081]
          Length = 901

 Score = 41.5 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 652 LVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
           LVF+G L             +    GA +S  +S +T  ++ G N  +K+ +A +   +K
Sbjct: 500 LVFSGVLPLGTDTQNADISLWAKSFGAAISTKISSRTTHLVAGRNRTAKVREATRYPNIK 559

Query: 708 IMNEEQFLFLLQQYN 722
           I+  +  L  + Q+ 
Sbjct: 560 IVTVQWLLDSITQWK 574


>gi|195996927|ref|XP_002108332.1| hypothetical protein TRIADDRAFT_52697 [Trichoplax adhaerens]
 gi|190589108|gb|EDV29130.1| hypothetical protein TRIADDRAFT_52697 [Trichoplax adhaerens]
          Length = 873

 Score = 41.5 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 13/73 (17%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI-------IIVGDNPGSKL 698
            + N      G      +++ ++ + + G  +   +SR TD+       +I   +   K+
Sbjct: 364 PLANFHFAIIG---NSNQNQMKKEIEEFGGKIDEKISRNTDLCISSHVEMIRNKD---KV 417

Query: 699 EKAQQLGVKIMNE 711
           ++AQ L + ++NE
Sbjct: 418 QQAQALNLPVVNE 430


>gi|158285701|ref|XP_564818.3| AGAP007413-PA [Anopheles gambiae str. PEST]
 gi|157020120|gb|EAL41797.3| AGAP007413-PA [Anopheles gambiae str. PEST]
          Length = 1257

 Score = 41.5 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           +    +E++  LGA V+  L + T  +I  D   S  +KA+++ + I++
Sbjct: 223 RSDGIKEHIASLGAKVNERLLKDTTHVIFKDGLLSTYQKAKKMNIPIVS 271


>gi|227487527|ref|ZP_03917843.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51867]
 gi|227092509|gb|EEI27821.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51867]
          Length = 2526

 Score = 41.5 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 12/142 (8%)

Query: 587  IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
            I    +D  LS   +  +  +     ++     R I A++   +         +      
Sbjct: 2392 IRIALSDSVLSEEEIEDINRVAEVLEIDQGTVSRMISAMQRSSETSDAPTFALQPGDRIA 2451

Query: 647  IENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQ 703
                 ++ + G+ +KI R+ +         +V A L + T I++  D      K +KA+ 
Sbjct: 2452 FTGPTVLHSVGSWEKITRNHS---------LVVADLDKSTVILVAADPDTMNKKAQKARN 2502

Query: 704  LGVKIMNEEQFLFLLQQYNTTL 725
              + I+NE+ +  LL+   + L
Sbjct: 2503 FKIPIINEQGYDRLLRDLESRL 2524


>gi|296230268|ref|XP_002760624.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Callithrix
           jacchus]
          Length = 1013

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDII 688
              +  +    + N K++  G L +  + + +  + +LG  ++         +S K ++ 
Sbjct: 378 AAVNSASAGKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEV- 435

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
              +    K+E+ ++  V++++E+ FL 
Sbjct: 436 ---EKMNKKMEEVKEANVRVVSED-FLQ 459


>gi|196015656|ref|XP_002117684.1| hypothetical protein TRIADDRAFT_61731 [Trichoplax adhaerens]
 gi|190579724|gb|EDV19814.1| hypothetical protein TRIADDRAFT_61731 [Trichoplax adhaerens]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ--Q 703
            + + ++   G L+K      +E +  LG +    +S+  ++ I      +K+EK +   
Sbjct: 156 PLGSLRITAVGKLKK-SNDNIKEKIISLGGIFCDQISKYINLCISQPESLNKVEKQKIDS 214

Query: 704 LGVKIMNEEQFLFLLQQYN 722
           LG+ +++ ++FL +++  N
Sbjct: 215 LGLPLVS-DEFLEVIRDGN 232


>gi|296230270|ref|XP_002760625.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 2 [Callithrix
           jacchus]
          Length = 992

 Score = 41.2 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDII 688
              +  +    + N K++  G L +  + + +  + +LG  ++         +S K ++ 
Sbjct: 357 AAVNSASAGKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEV- 414

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
              +    K+E+ ++  V++++E+ FL 
Sbjct: 415 ---EKMNKKMEEVKEANVRVVSED-FLQ 438


>gi|46126951|ref|XP_388029.1| hypothetical protein FG07853.1 [Gibberella zeae PH-1]
          Length = 765

 Score = 41.2 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEY---VTQLGAVVSAILSRKTDIIIVGDN--P 694
           ++  S+ +    +V +G +    R +  E        GA V   +S++   ++V      
Sbjct: 490 DELKSNVLSGLVIVLSGLVPLGVRVEESEIGLQAQSYGAQVLDTVSKRVTHLVVSSARPR 549

Query: 695 GSKLEKAQQL-GVKIMNEEQFLFLLQQY 721
             K+++A ++  +KI+N+   +  L Q+
Sbjct: 550 TKKVQQAAKIASIKIVNQNWLIDCLSQW 577


>gi|302391529|ref|YP_003827349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203606|gb|ADL12284.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
          Length = 454

 Score = 41.2 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSK---LEKAQQLGVKIMNEEQF 714
            LG   S+ ++  TD+I+V     S    LEKAQ LG+ +++E + 
Sbjct: 58  DLGGH-SSKVTDNTDLIVVSPGVPSDIPILEKAQSLGIPVISEIEL 102


>gi|297826573|ref|XP_002881169.1| hypothetical protein ARALYDRAFT_902162 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327008|gb|EFH57428.1| hypothetical protein ARALYDRAFT_902162 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 979

 Score = 41.2 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG------SK 697
           S ++ + K+  TG     +R   ++ + + G    A + + T  ++V    G      ++
Sbjct: 392 SEKLADLKVSITGV--TKERQAWKKRIEEAGGEFHANVKKGTSCLVV---CGLTDIRDAE 446

Query: 698 LEKAQQLGVKIMNEEQFLF 716
           L KA+++ V I+ E+  + 
Sbjct: 447 LRKARRMKVAIVREDYLVD 465


>gi|270006540|gb|EFA02988.1| hypothetical protein TcasGA2_TC010404 [Tribolium castaneum]
          Length = 1062

 Score = 41.2 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 9/182 (4%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
            +    N    +   R I L   + +           R++A+ +      +++  +    
Sbjct: 17  WEEPAGNDVAPLKSNRRICLVGGLTT-------DTALRTVAESFRVPVVTSKDGED--CA 67

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
            +D + ++  +      +   + +  Q+     A++ L  +  P         +  +   
Sbjct: 68  QDDSFSTVFILESFEGDVFNCLYKQKQSLMGPLALQQLANKNEPLPDNTRPLFNLAMTGV 127

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            + FTG   K         +  +G  +   +S+K   +I     G K   A    V +MN
Sbjct: 128 VVCFTGFRNKSDLATLVPLIHHMGGSIRKNISQKVTHLIANICNGEKYRYAAVFRVPVMN 187

Query: 711 EE 712
           ++
Sbjct: 188 QD 189


>gi|189237328|ref|XP_973173.2| PREDICTED: similar to pebble CG8114-PB [Tribolium castaneum]
          Length = 1055

 Score = 41.2 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 9/182 (4%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
            +    N    +   R I L   + +           R++A+ +      +++  +    
Sbjct: 17  WEEPAGNDVAPLKSNRRICLVGGLTT-------DTALRTVAESFRVPVVTSKDGED--CA 67

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
            +D + ++  +      +   + +  Q+     A++ L  +  P         +  +   
Sbjct: 68  QDDSFSTVFILESFEGDVFNCLYKQKQSLMGPLALQQLANKNEPLPDNTRPLFNLAMTGV 127

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            + FTG   K         +  +G  +   +S+K   +I     G K   A    V +MN
Sbjct: 128 VVCFTGFRNKSDLATLVPLIHHMGGSIRKNISQKVTHLIANICNGEKYRYAAVFRVPVMN 187

Query: 711 EE 712
           ++
Sbjct: 188 QD 189


>gi|52079930|ref|YP_078721.1| ATP-dependent DNA ligase [Bacillus licheniformis ATCC 14580]
 gi|52785303|ref|YP_091132.1| ATP-dependent DNA ligase [Bacillus licheniformis ATCC 14580]
 gi|52003141|gb|AAU23083.1| DNA ligase,phage related [Bacillus licheniformis ATCC 14580]
 gi|52347805|gb|AAU40439.1| LigB [Bacillus licheniformis ATCC 14580]
          Length = 269

 Score = 41.2 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 41/208 (19%)

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
           K+  NS  +  E K DG  +      G  +    R +     +V+A        P +L+L
Sbjct: 12  KEPFNSDDYITETKFDGIRLIASRNNG-LIRLYTRHNN----EVTAKF------PELLTL 60

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFF 239
           +IP+   + GE+ +             + G   +         ++ R         + F 
Sbjct: 61  DIPDETILDGELIVP-----------GSTGAGDFEA-------VMERFQSRKSFYPIVFC 102

Query: 240 VHGLGKTSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           V  + +   +    +   E  + +  L       V+      G  + Y E+   R     
Sbjct: 103 VFDVLRIEGVSVTSKPLSERKELLAGLKLDH-PNVKIVEGVRGHATDYFELV--RENK-- 157

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWM 325
            I+G+V K       +      RS RW+
Sbjct: 158 -IEGIVMKQANAPYAEN----KRSDRWL 180


>gi|153954104|ref|YP_001394869.1| FtsA-related protein [Clostridium kluyveri DSM 555]
 gi|219854716|ref|YP_002471838.1| hypothetical protein CKR_1373 [Clostridium kluyveri NBRC 12016]
 gi|146346985|gb|EDK33521.1| FtsA-related protein [Clostridium kluyveri DSM 555]
 gi|219568440|dbj|BAH06424.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 693

 Score = 41.2 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 10/154 (6%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE-FYQ 617
           I  + A + ++L    L+  +     ++I   N D   +   VP  GD I + I + +  
Sbjct: 200 IAAMEAAVPQNLRLLNLALIDIGAGTSDIALSNRDSISAYGMVPEAGDEITEVIAQNYLV 259

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV--FTGTLQKIQRHKAQEYVTQLGA 675
           +     +++    +           + +EI ++ +V   T T++KI      + +   G 
Sbjct: 260 DFNTAESIKRQCDKHKNITYTDVLGIENEISSEDVVKLITPTVKKITDKIGSKIIELNGG 319

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEK--AQQLGVK 707
                +      ++ G     KL++  A+ L + 
Sbjct: 320 KPPNAI-----FLVGGGAHTPKLKEFLAKGLNIP 348


>gi|289616535|emb|CBI56700.1| unnamed protein product [Sordaria macrospora]
          Length = 448

 Score = 41.2 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           +++    +  TG L    R      V ++GA +   +   T   +  +  G + EKA +L
Sbjct: 166 TDLSGITIT-TGILPPAVRESLARSVDRIGAKLVDSVRIDTTHFVTTEGRGVQWEKANEL 224

Query: 705 GVKIM 709
            + ++
Sbjct: 225 NIPVV 229


>gi|159163816|pdb|2COK|A Chain A, Solution Structure Of Brct Domain Of Poly(Adp-Ribose)
           Polymerase-1
          Length = 113

 Score = 41.2 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 38/78 (48%), Gaps = 13/78 (16%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIIIVGDNPGSKL 698
            + N K++  G L +  + + +  + +LG  ++         +S K ++    +    K+
Sbjct: 10  PLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEV----EKMNKKM 64

Query: 699 EKAQQLGVKIMNEEQFLF 716
           E+ ++  +++++E+ FL 
Sbjct: 65  EEVKEANIRVVSED-FLQ 81


>gi|159127495|gb|EDP52610.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Aspergillus
           fumigatus A1163]
          Length = 827

 Score = 41.2 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 647 IENKKLVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +    LVF+G L             +    GAV+S  ++ +T  ++ G N  +K+ +A +
Sbjct: 513 LGGVVLVFSGVLPLGTDTQNADISLWAKSFGAVISTKINMRTTHLVAGRNRTAKVREATR 572

Query: 704 L-GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731
              +KI+  +  L        L++    L +H DD
Sbjct: 573 YPNIKIVTTQWLLDSLTQWKRLEEEPYLLPVHPDD 607


>gi|302497269|ref|XP_003010635.1| BRCT domain protein [Arthroderma benhamiae CBS 112371]
 gi|291174178|gb|EFE29995.1| BRCT domain protein [Arthroderma benhamiae CBS 112371]
          Length = 782

 Score = 41.2 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
                 +  TG      R   +E V   GA     L++    +I     G+K + A Q G
Sbjct: 96  TFFGLSICITGFEDLDFRSHLEETVCAHGAEFRRDLTKAVTHLIAFACEGNKYQFAIQWG 155

Query: 706 VKIMNEEQFLFLLQQ 720
           +K+++ +     +++
Sbjct: 156 IKVVSLKWLEDSIER 170


>gi|119491655|ref|XP_001263322.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Neosartorya
           fischeri NRRL 181]
 gi|119411482|gb|EAW21425.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Neosartorya
           fischeri NRRL 181]
          Length = 824

 Score = 41.2 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 647 IENKKLVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +    LVF+G L             +    GAV+S  ++ +T  ++ G N  +K+ +A +
Sbjct: 513 LGGVVLVFSGVLPLGTDTQNADISLWAKSFGAVISTKINMRTTHLVAGRNRTAKVREATR 572

Query: 704 L-GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731
              +KI+  +  L        L++    L +H DD
Sbjct: 573 YPNIKIVTTQWLLDSLTQWKRLEEEPYLLPVHPDD 607


>gi|70999518|ref|XP_754478.1| RNA Polymerase II CTD phosphatase Fcp1 [Aspergillus fumigatus
           Af293]
 gi|66852115|gb|EAL92440.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Aspergillus
           fumigatus Af293]
          Length = 827

 Score = 41.2 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 647 IENKKLVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +    LVF+G L             +    GAV+S  ++ +T  ++ G N  +K+ +A +
Sbjct: 513 LGGVVLVFSGVLPLGTDTQNADISLWAKSFGAVISTKINMRTTHLVAGRNRTAKVREATR 572

Query: 704 L-GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731
              +KI+  +  L        L++    L +H DD
Sbjct: 573 YPNIKIVTTQWLLDSLTQWKRLEEEPYLLPVHPDD 607


>gi|119590191|gb|EAW69785.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_b [Homo
           sapiens]
          Length = 1008

 Score = 41.2 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 38/78 (48%), Gaps = 13/78 (16%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIIIVGDNPGSKL 698
            + N K++  G L +  + + +  + +LG  ++         +S K ++    +    K+
Sbjct: 387 PLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEV----EKMNKKM 441

Query: 699 EKAQQLGVKIMNEEQFLF 716
           E+ ++  +++++E+ FL 
Sbjct: 442 EEVKEANIRVVSED-FLQ 458


>gi|194332813|ref|NP_001123716.1| methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2,
           methenyltetrahydrofolate cyclohydrolase [Xenopus
           (Silurana) tropicalis]
 gi|189441929|gb|AAI67338.1| LOC100170462 protein [Xenopus (Silurana) tropicalis]
          Length = 335

 Score = 41.2 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 17/93 (18%)

Query: 645 SEIENKKLVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS------K 697
           +   N+ +V +G  L +  R +A+  V Q   V +        +++VGDNP S      K
Sbjct: 24  TPCRNEAVVISGRKLARQIRQEARHEVEQW--VAAGNKRPHLSVVLVGDNPASHSYVLNK 81

Query: 698 LEKAQQLGV--------KIMNEEQFLFLLQQYN 722
            + A  +G+          + EE+ L L+ + N
Sbjct: 82  TKAAADVGISSETILKPTSITEEELLDLINKLN 114


>gi|242079115|ref|XP_002444326.1| hypothetical protein SORBIDRAFT_07g020200 [Sorghum bicolor]
 gi|241940676|gb|EES13821.1| hypothetical protein SORBIDRAFT_07g020200 [Sorghum bicolor]
          Length = 518

 Score = 41.2 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 646 EIENKKLVFTGTLQKI---QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
            I+  + V   T+      +RH+    + + GA     +SR    ++     G K + A+
Sbjct: 2   PIDGMRSVVA-TVSGYHGEERHRLVNLIAETGASYVGSMSRSITHLVCWRLEGKKYDIAR 60

Query: 703 QLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
           +LG ++++   F+  L +     R+ +D
Sbjct: 61  KLGTRVVSHRWFMECLSEGR---RLPED 85


>gi|237756074|ref|ZP_04584652.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691767|gb|EEP60797.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 299

 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 13/137 (9%)

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
           L     + + +   +S+ A  IEG  +  +    K  +    I     IF   + +    
Sbjct: 103 LEIPGYEADDIIATLSKKAE-IEGY-EAIIVTPDKDMNQ--LISDNIKIFNPVKEELLDK 158

Query: 522 TKIENILGFGDVSVTNLYDSI-NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
            KI+   G       +    I +   NI         GI+ +G + A +L + + S +N 
Sbjct: 159 EKIKEKYGIYPQQFIDYLTMIGDAVDNIP--------GIKGIGPKTAAALLQEFGSLENI 210

Query: 581 AQEINNIIAHNNDDWLS 597
            + ++ +     + +  
Sbjct: 211 LENVDKLKGKLKESFKE 227


>gi|332023441|gb|EGI63684.1| PAX-interacting protein 1 [Acromyrmex echinatior]
          Length = 1276

 Score = 41.2 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 649 NKKLV-FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
            K+++ F+G  +  +R K +  +  LGA  +   SR   +++     G K +KA++    
Sbjct: 911 GKQIISFSG-FEGEERAKVKYMLEALGAKYTNYFSRHNTLLVCRRPDGLKYKKAREWQTN 969

Query: 708 IMNEEQFLFLL 718
           ++N +    LL
Sbjct: 970 VVNVQWLTDLL 980


>gi|188586920|ref|YP_001918465.1| helicase, RecD/TraA family [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351607|gb|ACB85877.1| helicase, RecD/TraA family [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 726

 Score = 41.2 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L +F+ S  I+ +G + A SL +++            ++    +    L  VP +G   A
Sbjct: 83  LIKFLSSGMIKGIGPKTAESLVEHFG---------KEVLQVIENTPEKLQEVPGIGKEKA 133

Query: 610 QAIVEFYQNPRNICAV 625
             I   +Q  + I  +
Sbjct: 134 AQISRGFQEHKQIKDI 149


>gi|118463087|ref|YP_879676.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
 gi|118164374|gb|ABK65271.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
          Length = 329

 Score = 41.2 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQQL 704
           ++  ++     +++    +  E +   G   S  + R+T +++  D      K   A+QL
Sbjct: 233 VQGMRVALAAEVER-THEELVERILHAGLAYSDTVDRETSLVVCNDPAAEHGKGYLARQL 291

Query: 705 GVKIMNEEQFLF 716
           GV ++++ QFL 
Sbjct: 292 GVPVISDAQFLD 303


>gi|227541256|ref|ZP_03971305.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51866]
 gi|227182972|gb|EEI63944.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51866]
          Length = 1246

 Score = 40.8 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 12/142 (8%)

Query: 587  IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
            I    +D  LS   +  +  +     ++     R I A++   +         +      
Sbjct: 1112 IRIALSDSVLSEEEIEDINRVAEVLEIDQGTVSRMISAMQRSSETSDAPTFALQPGDRIA 1171

Query: 647  IENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQ 703
                 ++ + G+ +KI R+ +         +V A L + T I++  D      K +KA+ 
Sbjct: 1172 FTGPTVLHSVGSWEKITRNHS---------LVVADLDKSTVILVAADPDTMNKKAQKARN 1222

Query: 704  LGVKIMNEEQFLFLLQQYNTTL 725
              + I+NE+ +  LL+   + L
Sbjct: 1223 FKIPIINEQGYDRLLRDLESRL 1244


>gi|41406411|ref|NP_959247.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254773395|ref|ZP_05214911.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|41394760|gb|AAS02630.1| DnaQ [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 329

 Score = 40.8 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQQL 704
           ++  ++     +++    +  E +   G   S  + R+T +++  D      K   A+QL
Sbjct: 233 VQGMRVALAAEVER-THEELVERILHAGLAYSDTVDRETSLVVCNDPAAEHGKGYLARQL 291

Query: 705 GVKIMNEEQFLF 716
           GV ++++ QFL 
Sbjct: 292 GVPVISDAQFLD 303


>gi|331085252|ref|ZP_08334338.1| hypothetical protein HMPREF0987_00641 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408035|gb|EGG87525.1| hypothetical protein HMPREF0987_00641 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 639

 Score = 40.8 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 88/266 (33%), Gaps = 35/266 (13%)

Query: 456 HRCTGGLACSAQQLERLK----HFVSRDAFN---IEGLGKQQLDFFFKSEDPAFSIRIPA 508
           +RC   L    +  +R+      F+  DA +     G+  +++  F K            
Sbjct: 190 NRCRFPLEVIDELRKRMPEGMPLFIRIDAQDDLLENGMSIEEVIRFCKIAKEHGV----- 244

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D+  + R    +   +  +      +  N+ ++   R+          +    VG     
Sbjct: 245 DVLDVSRGNIITAASMYEVPPIDVPNAFNVENAARIRKET-------GMVTVGVGRINTA 297

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR---VPLVGDII--AQAIVEFYQNPRNIC 623
           +LA+  ++       +       + ++ +  +   V  +   +   Q   + + +  N  
Sbjct: 298 ALAEELIADDKVDMVVMGRAQLADPEFANKAKEGHVEDIVHCVGCNQGCYDGFCDVVNRP 357

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIEN--KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
            +       +P IG   +      E   K  V  G +  +   +A   + + G  V+   
Sbjct: 358 HI---TCMRNPMIGHEAEYTLDPAEYTKKVWVIGGGVAGM---EAARILHKRGHQVTVFE 411

Query: 682 SRKT---DIIIVGDNPGSKLEKAQQL 704
           +  T   + ++ G+ PG    KA  L
Sbjct: 412 AADTLGGEFLLAGEAPGKGEMKAAAL 437


>gi|302875860|ref|YP_003844493.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B]
 gi|307689293|ref|ZP_07631739.1| helicase, RecD/TraA family protein [Clostridium cellulovorans 743B]
 gi|302578717|gb|ADL52729.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B]
          Length = 737

 Score = 40.8 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           I +ER++ S  ++ +G   AR + +++          N+ +    +D   L  +  +G  
Sbjct: 77  IGIERYLSSGVVQGIGPVTARKIVQHFG---------NDALRIMEEDIERLKEIEGIGAK 127

Query: 608 IAQAIVEFYQNPRNICAV 625
             + I E +   R+I A+
Sbjct: 128 KIKVIAESFATQRDIRAI 145


>gi|316975722|gb|EFV59124.1| putative BRCA1 domain protein [Trichinella spiralis]
          Length = 1048

 Score = 40.8 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +   + K    +G     +R   ++ +  +GA  +A  SR   +++     G K+ KA +
Sbjct: 606 NKPCKGKIFAVSG-FPVKERSCLKQMILAVGAHYTAYFSRHNHLLVAKTYCGPKVMKAAE 664

Query: 704 LGVKIMN 710
             + ++N
Sbjct: 665 WKIPVVN 671


>gi|330930047|ref|XP_003302870.1| hypothetical protein PTT_14854 [Pyrenophora teres f. teres 0-1]
 gi|311321498|gb|EFQ89046.1| hypothetical protein PTT_14854 [Pyrenophora teres f. teres 0-1]
          Length = 803

 Score = 40.8 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 64/145 (44%), Gaps = 12/145 (8%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +   + +  +     D++    +VP  G  IA+   E         +++  + +V+  +
Sbjct: 461 LEVIERNLLRVHRTFYDEYRKAKKVPA-GGRIAELKGE---KSPKKRSMDEFIPDVAEIM 516

Query: 637 GRHEKNVSSEIENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-D 692
            R ++ V   ++   +VF+G +     ++      +++  GA V   ++R+T  +I   D
Sbjct: 517 PRIKEEV---LDGAVVVFSGIIPLGVDVRSSDFALWISSFGAEVDTNVTRRTTHVIANPD 573

Query: 693 NPGSKLEKAQQL-GVKIMNEEQFLF 716
              +K+++A +   +KI+N E    
Sbjct: 574 RKTTKVKRAARYPNIKIVNPEWMFQ 598


>gi|83767703|dbj|BAE57842.1| unnamed protein product [Aspergillus oryzae]
          Length = 820

 Score = 40.8 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 647 IENKKLVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +    LVF+G L             +    GAV+S  ++ KT  ++ G N  +K+ +A +
Sbjct: 513 LGGVILVFSGVLPLGTDTQNADISLWAKSFGAVISQKINVKTTHLVAGRNRTAKVREATR 572

Query: 704 L-GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731
              VKI+  +  L        L +    L +H DD
Sbjct: 573 YTNVKIVTTQWLLDCLTQWKWLDEEPYLLPVHPDD 607


>gi|194227290|ref|XP_001491507.2| PREDICTED: similar to Poly [ADP-ribose] polymerase 1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase 1)
           (Poly[ADP-ribose] synthetase 1) [Equus caballus]
          Length = 999

 Score = 40.8 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR-----KTDIIIVGDNPGSKLEK 700
            + N K++  G L +  + + +  + +LG  ++   S+      T   +  +    K+E+
Sbjct: 374 PLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTTSKASLCISTQKEV--EKMNKKMEE 430

Query: 701 AQQLGVKIMNEEQFLF 716
            ++  +++++E+ FL 
Sbjct: 431 VKEANLRVVSED-FLQ 445


>gi|66810123|ref|XP_638785.1| PARP domain-containing protein [Dictyostelium discoideum AX4]
 gi|60467405|gb|EAL65431.1| PARP domain-containing protein [Dictyostelium discoideum AX4]
          Length = 760

 Score = 40.8 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV---SAILSRKTDIIIVGD---NP 694
              S+ +  K +   GTL  + ++  Q  +T+ G      +  ++  T ++       N 
Sbjct: 598 MPASNILNGKTISLLGTLSTV-QYNIQNLITKHGGSFHSHTTNVNGCTQLVTTSSDYFNL 656

Query: 695 GSKLEKAQQLGVKIMNE 711
           G+K++ A   GV I+NE
Sbjct: 657 GTKVQNANLNGVPIVNE 673


>gi|116191521|ref|XP_001221573.1| hypothetical protein CHGG_05478 [Chaetomium globosum CBS 148.51]
 gi|88181391|gb|EAQ88859.1| hypothetical protein CHGG_05478 [Chaetomium globosum CBS 148.51]
          Length = 1107

 Score = 40.8 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%)

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             TG     +R +    +   G + +  L+++   +IV    G K   A+  GV  ++
Sbjct: 327 CMTGFEDPDEREQIIGQIEANGGLYTGDLTKQVTHLIVYKPEGRKYHAAKNWGVTTVS 384


>gi|260827623|ref|XP_002608764.1| hypothetical protein BRAFLDRAFT_73983 [Branchiostoma floridae]
 gi|229294116|gb|EEN64774.1| hypothetical protein BRAFLDRAFT_73983 [Branchiostoma floridae]
          Length = 2524

 Score = 40.8 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 651 KLVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---GSKLEKAQQLGV 706
            L  TG TL   ++ + +E VTQ   ++S I+++KT  +++G+       K   A +LG+
Sbjct: 10  TLELTGVTLPYKEKKRLRELVTQNDGIISYIINKKTSFLVLGNKERTDSYKCRTAVKLGL 69

Query: 707 KIMN 710
            +++
Sbjct: 70  PVVS 73


>gi|317144011|ref|XP_001819844.2| RNA polymerase II subunit A C-terminal domain phosphatase
           [Aspergillus oryzae RIB40]
          Length = 799

 Score = 40.8 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 647 IENKKLVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +    LVF+G L             +    GAV+S  ++ KT  ++ G N  +K+ +A +
Sbjct: 492 LGGVILVFSGVLPLGTDTQNADISLWAKSFGAVISQKINVKTTHLVAGRNRTAKVREATR 551

Query: 704 L-GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731
              VKI+  +  L        L +    L +H DD
Sbjct: 552 YTNVKIVTTQWLLDCLTQWKWLDEEPYLLPVHPDD 586


>gi|82132322|sp|Q7ZZY3|TOB1B_XENLA RecName: Full=DNA topoisomerase 2-binding protein 1-B; AltName:
           Full=DNA topoisomerase II-binding protein 1-B;
           Short=TopBP1-B; AltName: Full=Xmus101
 gi|30016918|gb|AAP03894.1| Xmus101 [Xenopus laevis]
          Length = 1513

 Score = 40.8 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
                +  TG L  + R + Q      G   +  L    +  +IV +  G K E A++  
Sbjct: 199 FRGCTICVTG-LSSLDRKEVQRLTALHGGEYTGQLKMNESTHLIVQEAKGQKYECARKWI 257

Query: 706 VKIMNEEQFLFLLQQY 721
           V  ++ + F   +++ 
Sbjct: 258 VHCISVQWFFDSIEKG 273


>gi|328790898|ref|XP_624477.3| PREDICTED: poly [ADP-ribose] polymerase [Apis mellifera]
          Length = 991

 Score = 40.8 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----D 692
           G         +++ + V  G  +K +    ++ +  LG  V + L      +I      +
Sbjct: 368 GPKVDAKPRPLKHMQFVIIGHTEKHK-DTLKKEILHLGGDVISKLHEHVTAVISTQHEIE 426

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
               K+E+A+   ++I+ E+ F+   ++Y  +
Sbjct: 427 KMSKKMEEAKNFNIQIITED-FVEEAKEYTKS 457


>gi|297190639|ref|ZP_06908037.1| ATP-dependent DNA ligase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297150569|gb|EFH30670.1| ATP-dependent DNA ligase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 356

 Score = 40.8 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 33/206 (16%)

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                 E K DG    +  +  + V  +  G   +        R  P +   LS N+P  
Sbjct: 21  PPGMHYEAKWDGFRAIVHRDGDELVIGSRTGKPLT--------RYFPELVTSLSENLPAR 72

Query: 185 IEVRGEVYISKN---DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241
             + GE+ I+     DF  L + +     +            +R L       ++ F V 
Sbjct: 73  CVIDGEIVIAHEGRLDFDRLTERIHPADSR------------VRMLAERTPASFVAFDVL 120

Query: 242 GLGKTS--EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            LG  S  +     + E L++      P  +             ++ + +         +
Sbjct: 121 ALGDESLMDAPLGARRERLEEALADARPPVHLTPTTTDVEVAQRWFEQYE------GAGL 174

Query: 300 DGLVYKVDEFSLQK--QLGERARSPR 323
           DG+V K  +   +   +L  + +  R
Sbjct: 175 DGVVAKPLDLPYRPDVRLMYKVKHER 200


>gi|221488208|gb|EEE26422.1| hypothetical protein TGGT1_109595 [Toxoplasma gondii GT1]
          Length = 224

 Score = 40.8 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692
           S    +     E+   K    G+     RH   + VT  G +    L + TD+++V D  
Sbjct: 86  SEAEDDIPKKKELAGLKFACIGS-TNPPRHALAKLVTSHGGIFQESLDKDTDLLLVSDDD 144

Query: 693 ----NPGSKLEKAQQLGVKIM 709
                   +   AQ  GV I+
Sbjct: 145 WAAAKASQRYRDAQLAGVAIV 165


>gi|213406509|ref|XP_002174026.1| predicted protein [Schizosaccharomyces japonicus yFS275]
 gi|212002073|gb|EEB07733.1| predicted protein [Schizosaccharomyces japonicus yFS275]
          Length = 631

 Score = 40.8 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           +++++ ++  TG   + +R      ++  GA     L + T+I++  +   SK   A   
Sbjct: 299 NKLKDMEISCTG-FSRRKRDFLAYLISCSGATFQKTLRKSTNILLAQNTSSSKYLAAMDW 357

Query: 705 GVKIMNEEQFLF 716
           G+ ++N  +++ 
Sbjct: 358 GITVVN-HEWIQ 368


>gi|255537217|ref|XP_002509675.1| conserved hypothetical protein [Ricinus communis]
 gi|223549574|gb|EEF51062.1| conserved hypothetical protein [Ricinus communis]
          Length = 320

 Score = 40.8 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 36  YQYSKPIILDSEYDALKRRCDA 57
           Y    PI+ D E+D LK R   
Sbjct: 146 YVSGNPIMSDEEFDQLKLRLKQ 167


>gi|320582443|gb|EFW96660.1| putative nuclear cohesin complex SMC ATPase [Pichia angusta DL-1]
          Length = 1518

 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 58/146 (39%), Gaps = 7/146 (4%)

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              +   +   +++S +R     GI+  G    R   K + S  N +++I  + + +   
Sbjct: 260 SEKILSQLENPKSVSFKRV----GIKSKGPS-PRQGNKIFAS-DNQSKQIGVVCSGSPSP 313

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
            L        G  + + +++ ++  +N+  +++   + +  +GR+    S+     + V 
Sbjct: 314 TLGGNVDDYNGANV-KIVIQGFKTYKNMTIIDSFSPKHNVVVGRNGSGKSNFFAAIRFVL 372

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAI 680
           +     + R + Q  + +    V + 
Sbjct: 373 SDAYTNMTREERQSLIHEGSGTVMSA 398


>gi|326921510|ref|XP_003207001.1| PREDICTED: hypothetical protein LOC100545788 [Meleagris gallopavo]
          Length = 1080

 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 710 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVNAQW 768

Query: 714 FLFLL 718
              +L
Sbjct: 769 LCDIL 773


>gi|212526776|ref|XP_002143545.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Penicillium
           marneffei ATCC 18224]
 gi|210072943|gb|EEA27030.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Penicillium
           marneffei ATCC 18224]
          Length = 829

 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 647 IENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +    LVF+G L     +Q      +    GAV+S+ +  KT  ++ G N  +K+ +A +
Sbjct: 517 LGGVVLVFSGVLPLGTDLQNADISLWAKSFGAVISSRIGSKTTHLVAGRNRTAKVREATR 576

Query: 704 L-GVKIMNEEQFLF 716
              +KI+  +  L 
Sbjct: 577 YPRIKIVTTQWLLD 590


>gi|149634811|ref|XP_001512809.1| PREDICTED: similar to PAX interacting (with
           transcription-activation domain) protein 1
           [Ornithorhynchus anatinus]
          Length = 1080

 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 712 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVNAQW 770

Query: 714 FLFLL 718
              +L
Sbjct: 771 LCDIL 775


>gi|118085547|ref|XP_418546.2| PREDICTED: similar to PAXIP1 protein [Gallus gallus]
          Length = 1259

 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 889 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVNAQW 947

Query: 714 FLFLL 718
              +L
Sbjct: 948 LCDIL 952


>gi|47226438|emb|CAG08454.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 342

 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 17/91 (18%)

Query: 652 LVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS------KLEKAQQL 704
           +V +G  L +  R +A+  V +   V++        +++VGD+P S      K   A  +
Sbjct: 31  VVISGRKLARQIREEARADVEKW--VLTGHRRPHLSVVLVGDDPASHSYVLNKTRAAADI 88

Query: 705 GV---KI-----MNEEQFLFLLQQYNTTLRI 727
           G+    I     ++EE+ L L+ + NT  R+
Sbjct: 89  GISSETILKHSDISEEELLDLIDKLNTDHRV 119


>gi|269836449|ref|YP_003318677.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269785712|gb|ACZ37855.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 609

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 11/71 (15%)

Query: 545 RRNISLERFIFSL-GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           R+  +   F  +L G++ VG    ++L K + S     Q     +A           VP 
Sbjct: 545 RKRRTKSTFRSALDGLKGVGPARRKALLKTFGSVARIRQASVEELAA----------VPG 594

Query: 604 VGDIIAQAIVE 614
           +G  +A+ I E
Sbjct: 595 IGPRLAEQIKE 605


>gi|238881946|gb|EEQ45584.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 903

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
             ++  K+  T       R    + +T +G V +  L+R  D ++ G   G K + A
Sbjct: 340 DGLQGLKISIT-NYSGEARSYLSKLITIMGGVFTKTLTRDNDYLVCGKAEGKKFDAA 395


>gi|68466599|ref|XP_722495.1| hypothetical protein CaO19.1445 [Candida albicans SC5314]
 gi|68466882|ref|XP_722356.1| hypothetical protein CaO19.9020 [Candida albicans SC5314]
 gi|46444326|gb|EAL03601.1| hypothetical protein CaO19.9020 [Candida albicans SC5314]
 gi|46444474|gb|EAL03748.1| hypothetical protein CaO19.1445 [Candida albicans SC5314]
          Length = 903

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
             ++  K+  T       R    + +T +G V +  L+R  D ++ G   G K + A
Sbjct: 340 DGLQGLKISIT-NYSGEARSYLSKLITIMGGVFTKTLTRDNDYLVCGKAEGKKFDAA 395


>gi|330508988|ref|YP_004385416.1| DEAD/DEAH box helicase domain-containing protein [Methanosaeta
           concilii GP-6]
 gi|328929796|gb|AEB69598.1| DEAD/DEAH box helicase domain protein [Methanosaeta concilii GP-6]
          Length = 762

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 10/56 (17%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           I  VG  +AR L +++ S       I  +IA + ++      V +VG  IA+ I E
Sbjct: 709 IPSVGPSVARKLLRHFGS-------IEKVIAASKEELQE---VDMVGPKIAERIRE 754


>gi|313205089|ref|YP_004043746.1| cytoplasmic peptidoglycan synthetase domain protein [Paludibacter
           propionicigenes WB4]
 gi|312444405|gb|ADQ80761.1| cytoplasmic peptidoglycan synthetase domain protein [Paludibacter
           propionicigenes WB4]
          Length = 486

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 664 HKAQEYVTQLGAVV----SAILSRKTDIIIVG---DNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++ +E +   G +      + ++ +TD+++     ++   +++KA++L + I+   + L 
Sbjct: 75  NETREKLEAEGILCFLQDGSGITAQTDLVVASTAIEDTVFEVQKAKELNIPILRRSEVLA 134

Query: 717 LLQQYNTTLRI 727
           L+ +   T+ +
Sbjct: 135 LIAESKKTIAV 145


>gi|195485593|ref|XP_002091155.1| GE13490 [Drosophila yakuba]
 gi|194177256|gb|EDW90867.1| GE13490 [Drosophila yakuba]
          Length = 810

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF---TGTLQKIQRHK-AQEYVTQL 673
           N  ++   E  +  +     +   ++   +++  +     TG      R +  +  + ++
Sbjct: 158 NTFDVPLAEQSIITMEERNPQEPPSLPELLKDIVVYVEVRTG---NDNRSEGVKTIIAKM 214

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           GA V   L+R T  ++  D   S  +KA +  + +++
Sbjct: 215 GAQVKDRLTRTTTHVVFKDGQLSTYKKAAEWNIPVVS 251


>gi|238486788|ref|XP_002374632.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Aspergillus
           flavus NRRL3357]
 gi|220699511|gb|EED55850.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Aspergillus
           flavus NRRL3357]
          Length = 698

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 647 IENKKLVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +    LVF+G L             +    GAV+S  ++ KT  ++ G N  +K+ +A +
Sbjct: 391 LGGVILVFSGVLPLGTDTQNADISLWAKSFGAVISQKINVKTTHLVAGRNRTAKVREATR 450

Query: 704 L-GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731
              VKI+  +  L        L +    L +H DD
Sbjct: 451 YTNVKIVTTQWLLDCLTQWKWLDEEPYLLPVHPDD 485


>gi|189211133|ref|XP_001941897.1| RNA polymerase II subunit A C-terminal domain phosphatase
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187977990|gb|EDU44616.1| RNA polymerase II subunit A C-terminal domain phosphatase
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 774

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 65/146 (44%), Gaps = 14/146 (9%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +   + +  +     D++    +VP  G  IA+   E         +++  + +V+  +
Sbjct: 461 LEIIERNLLRVHRTFYDEYRKAKKVPA-GGRIAELKGE---KSPKKRSMDEFIPDVAEIM 516

Query: 637 GRHEKNVSSEIENKKLVFTG----TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691
            R ++ V   ++   +VF+G     +  +    A  +++  GA V+  ++R+T  +I   
Sbjct: 517 PRIKEEV---LDGAVVVFSGIIPLGVDVLSSDFA-LWISSFGAEVNTNVTRRTTHVIANP 572

Query: 692 DNPGSKLEKAQQL-GVKIMNEEQFLF 716
           D   +K+++A +   +KI+N E    
Sbjct: 573 DRKTTKVKRAARYPNIKIVNPEWMFQ 598


>gi|115396432|ref|XP_001213855.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193424|gb|EAU35124.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 820

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 647 IENKKLVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +    LVF+G L             +    GAV+S  ++ KT  ++ G N  +K+ +A +
Sbjct: 513 LGGVVLVFSGVLPLGTDTQNADISLWAKSFGAVISQKINMKTTHLVAGRNRTAKVREATR 572

Query: 704 L-GVKIMNEEQFLFLLQQYN 722
              +KI+  +  L  L Q+ 
Sbjct: 573 YPNIKIVTTQWLLDSLTQWK 592


>gi|198423074|ref|XP_002122302.1| PREDICTED: similar to poly (ADP-ribose) polymerase family, member 4
           [Ciona intestinalis]
          Length = 2278

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 644 SSEIENKKLVF-TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKA 701
           +   +++  V  TGT     +   +  +T+ G  +S +L++K+  ++   N    K ++A
Sbjct: 14  NDVFKHRLFVLETGTSSYKYKQDLRSKITKNGGTISYLLTKKSHYVVSQPNTDTYKTQRA 73

Query: 702 QQLGVKIMN 710
            +LG+ +++
Sbjct: 74  LKLGIPVVS 82


>gi|321457134|gb|EFX68227.1| hypothetical protein DAPPUDRAFT_301523 [Daphnia pulex]
          Length = 1305

 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 13/94 (13%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT---------DIIIVGDNPGSK 697
           ++   + ++G   ++ R      + QLG       SRK            ++     G K
Sbjct: 601 LDGYTVSYSGIQGRM-RELLDILIVQLGGRPQETFSRKLMEEKKVYRSTHLVCAKTEGRK 659

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
            EKA + GV  ++  +++  +    ++ R  ++D
Sbjct: 660 YEKALEWGVPAVS-AEWV--IACATSSTRPKEED 690



 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 7/132 (5%)

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
            F+  + ++I  +  D+    +V  +   I   I  +     N  +++  +    P   R
Sbjct: 142 AFSVNVTHLIVKSVADFSLKFKV-AINRDIPVMIPNWVDAVWN-ASLKESVHGTDPMFAR 199

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS-RKTDIIIVGDNPGSK 697
                    +   +  +  +    R   ++ +   G   S  L   KT+I+I     G K
Sbjct: 200 ---YACPPFQGLVICVSQ-IPVKDREALKKIIEANGGRYSGQLEMGKTNILITTSAEGEK 255

Query: 698 LEKAQQLGVKIM 709
              A++  ++ +
Sbjct: 256 YTYAKRWKIRCL 267


>gi|237832905|ref|XP_002365750.1| NAD(+) ADP-ribosyltransferase, putative [Toxoplasma gondii ME49]
 gi|211963414|gb|EEA98609.1| NAD(+) ADP-ribosyltransferase, putative [Toxoplasma gondii ME49]
          Length = 1012

 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692
           S    +     E+   K    G+     RH   + VT  G +    L + TD+++V D  
Sbjct: 271 SEAEDDIPKKKELAGLKFACIGS-TNPPRHALAKLVTSHGGIFQESLDKDTDLLLVSDDD 329

Query: 693 ----NPGSKLEKAQQLGVKIM 709
                   +   AQ  GV I+
Sbjct: 330 WAAAKASQRYRDAQLAGVAIV 350


>gi|260776001|ref|ZP_05884897.1| hypothetical protein VIC_001386 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608417|gb|EEX34586.1| hypothetical protein VIC_001386 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 296

 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 16/88 (18%)

Query: 10  EALSIEQARKELS-SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
            +++ + A++++  +L +++ +H+D Y+  +K          L  +       F      
Sbjct: 38  PSMTADAAKQKIDDALYRQVIHHNDNYHTKAK---------QLLDKLTHSE-QFQSPGSL 87

Query: 69  EDP-----NGPLNKIGGEMNLSLFKVTH 91
             P       PL+ IG + N S+    H
Sbjct: 88  YAPRLANFTSPLSGIGFDSNSSVEPFVH 115


>gi|290989157|ref|XP_002677209.1| hypothetical protein NAEGRDRAFT_79764 [Naegleria gruberi]
 gi|284090815|gb|EFC44465.1| hypothetical protein NAEGRDRAFT_79764 [Naegleria gruberi]
          Length = 621

 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
             +     +GTL K  R + +  + + G   +A +++    +I
Sbjct: 7   FNSLVFCISGTLSKG-RKEVENEIKKYGGKTAASITKAVTHLI 48


>gi|206901843|ref|YP_002251194.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12]
 gi|226698348|sp|B5YF86|UVRC_DICT6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|206740946|gb|ACI20004.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12]
          Length = 599

 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  VG +  + L + + + +N  +               L +VP + + IA+ I  ++ +
Sbjct: 548 IPGVGEKRMKILLEAFSTLENLKKA----------SLEDLKKVPGISEKIAEKIYLYFHD 597


>gi|254451520|ref|ZP_05064957.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238]
 gi|198265926|gb|EDY90196.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238]
          Length = 679

 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 17/99 (17%)

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
              F   S  +  + I K        ++ S  IR +G   A+ L K +           +
Sbjct: 25  KARFLRTSAPSSLEGIEK--------YLGSGMIRGIGPVYAKRLVKKFG---------KD 67

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
           +      +   L  V  +G   A  I   + + + I  +
Sbjct: 68  VFDLIEAEPERLREVEGIGPKRADKITSAWADQKVIREI 106


>gi|255524030|ref|ZP_05390992.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans
           P7]
 gi|296186887|ref|ZP_06855288.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans
           P7]
 gi|255512317|gb|EET88595.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans
           P7]
 gi|296048601|gb|EFG88034.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans
           P7]
          Length = 458

 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 675 AVVSAILSRKTDIIIVGDNPGSK----LEKAQQLGVKIMNEEQFL-FLLQQYNTTLRIHD 729
             V   +S   D+++      SK    L KA++L + IM+  +FL  L++ +   + I  
Sbjct: 61  GQVEENISEDIDLVVY-TAAVSKDNPELLKAKELNIPIMSRAEFLGHLMKGHKFNVAIAG 119

Query: 730 D 730
            
Sbjct: 120 T 120


>gi|170103388|ref|XP_001882909.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164642280|gb|EDR06537.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 375

 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKLEKAQQLGVKIMN----EEQF 714
           R   ++ +T +GA  +  ++ K  ++I         G+K  KA    + ++N    E+ F
Sbjct: 85  REYLKKLITAMGATFTPSMTGKNTVLIAAFPLLSLTGTKATKALSWSIPVVNHTWLEDCF 144

Query: 715 LF 716
           + 
Sbjct: 145 VQ 146


>gi|255951016|ref|XP_002566275.1| Pc22g23840 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593292|emb|CAP99672.1| Pc22g23840 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 422

 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           +++     V TG L   Q+      + ++G  +   +   T   +  +  G++ EKA ++
Sbjct: 166 TDLSGIT-VTTGILDPQQKEALGAALDRIGGKMIDSVRIDTTHFVCTEGRGAQWEKAVEM 224

Query: 705 GVKIM 709
            + ++
Sbjct: 225 NIPVV 229


>gi|320580685|gb|EFW94907.1| DNA polymerase II complex component [Pichia angusta DL-1]
          Length = 499

 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 23/51 (45%)

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
            +  R    + +  LG   +  L+    +++  +  G + EKA + G+ ++
Sbjct: 14  PQFHRDVIAKIIVDLGGNPTESLTPSHKVVVSIEKSGKRYEKAIEWGIPVV 64


>gi|327292662|ref|XP_003231029.1| hypothetical protein TERG_08505 [Trichophyton rubrum CBS 118892]
 gi|326466835|gb|EGD92288.1| hypothetical protein TERG_08505 [Trichophyton rubrum CBS 118892]
          Length = 821

 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
                 +  TG      R   ++ V   GA     L++    +I     G+K + A Q G
Sbjct: 107 TFFGLSICITGFEDLDFRSHLEKTVCAHGAEFRRDLTKAVTHLIAFACEGNKYQFAIQWG 166

Query: 706 VKIMNEEQFLFLLQQ 720
           +K+++ +     +++
Sbjct: 167 IKVVSLKWLEDSIER 181


>gi|296479253|gb|DAA21368.1| poly [ADP-ribose] polymerase 1 [Bos taurus]
          Length = 1016

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 43/95 (45%), Gaps = 13/95 (13%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIIIVG 691
           H       + N K++  G L +  + + +  + +LG  ++         +S K ++    
Sbjct: 384 HSGPPDKPLSNMKILTLGKLSQ-NKDEVKATIEKLGGKLTGTANKASLCISTKKEV---- 438

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           D    K+E+ ++  +++++E+ FL  +     +L+
Sbjct: 439 DKMNKKMEEVKEANIRVVSED-FLQDISASTKSLQ 472


>gi|169600911|ref|XP_001793878.1| hypothetical protein SNOG_03310 [Phaeosphaeria nodorum SN15]
 gi|160705543|gb|EAT90041.2| hypothetical protein SNOG_03310 [Phaeosphaeria nodorum SN15]
          Length = 810

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 70/165 (42%), Gaps = 14/165 (8%)

Query: 559 IRHVGAEIAR--SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           + HV    AR   L       +   + +  +     D+++    +P  G  IA+   E  
Sbjct: 445 MEHVEHPKARHSVLNDDDRGLEIIEKHLVQVHRTFYDEYVKAKAIPA-GGRIAELKGE-- 501

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ---KIQRHKAQEYVTQL 673
                  A+  ++ +V+  + R ++ V   ++   +VF+G +     +Q      ++   
Sbjct: 502 -KSPKKRALSDIIPDVAEIMPRIKEEV---LDGVVVVFSGIIPLGVDVQTSDYALWIRSF 557

Query: 674 GAVVSAILSRKTDIIIVG-DNPGSKLEKAQQLG-VKIMNEEQFLF 716
           GA V+  ++R+T  +I   D   +K+++A +   +KI+N E    
Sbjct: 558 GAEVTTSVNRRTTHVIANPDRKTTKVKQAARYQHIKIVNPEWMFQ 602


>gi|307180232|gb|EFN68265.1| DNA topoisomerase 2-binding protein 1 [Camponotus floridanus]
          Length = 1286

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 47/147 (31%), Gaps = 1/147 (0%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
              +          +  +      + + I  F  +  +   +        P         
Sbjct: 50  TEKMCDKMKPSKNDIFIIEEFSGTLFEKIQNFKCSIVSPKCLLICFLNGEPIPEGKNPIY 109

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           ++ +    +  +G   ++++ + Q+ V  +G   +  L      ++       K E A +
Sbjct: 110 TTAMRGMCICVSGVTPELKK-QIQKRVEYMGGFFTKQLRSSVTHLVADSVMSEKYEGALK 168

Query: 704 LGVKIMNEEQFLFLLQQYNTTLRIHDD 730
           + + IM +E    + ++    +   +D
Sbjct: 169 MKIPIMKKEWVEAVWEENLKNVTQAND 195


>gi|328710863|ref|XP_003244384.1| PREDICTED: DNA topoisomerase 2-binding protein 1-A-like
           [Acyrthosiphon pisum]
          Length = 758

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 22/114 (19%)

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVF-----TGTLQKIQRHKAQEYVTQL 673
           C            I     +           K  V      TG+    +R+  +E    L
Sbjct: 154 CLWIEDCYNNVEQIPVEYYHKPVIFSGSMPLKNCVISITNYTGS----ERYFLKEVSLLL 209

Query: 674 GAVVSAILSRK---------TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           GA     LSRK         T  +I     G K E + + GV ++++E  L  +
Sbjct: 210 GANFQDALSRKSKPEDNIMITTHLICSTPEGPKYEASVKWGVPVVSKEWLLKCI 263


>gi|134056779|emb|CAK37687.1| unnamed protein product [Aspergillus niger]
          Length = 788

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 647 IENKKLVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +    LVF+G L             +    GAV+++ ++  T  ++ G N   K+ +A +
Sbjct: 479 LGGVTLVFSGVLPLGTDTQNADIXLWAKSFGAVIASKINMXTTHLVAGRNRTXKVREATR 538

Query: 704 L-GVKIMNEEQFLFLLQQYN 722
              VKI+  +  L  L Q+ 
Sbjct: 539 YPKVKIVTTQWLLDCLTQWK 558


>gi|326437795|gb|EGD83365.1| hypothetical protein PTSG_03974 [Salpingoeca sp. ATCC 50818]
          Length = 864

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 9/141 (6%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA      +   Q    +  H + D      +  V DI  +    F+        V   
Sbjct: 568 RLASKLGGPEWRVQRQPRLRPHEDTD----AHLKTVTDICKEICTSFFHAYD-RDGVAPS 622

Query: 629 LKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHK---AQEYVTQLGAVVSAILSRK 684
            K + P + R         +E  ++VFTG + + Q      A      +GAVV   +  +
Sbjct: 623 TKAILPRLHRKFPHYPPWILEGVRIVFTGVIPRGQSAYTHPAWRMAVNMGAVVVDQVDER 682

Query: 685 TDIIIVGDNPGSKLEKAQQLG 705
              ++   +   K+ +A+++G
Sbjct: 683 VTHVVARVDGTDKVRQARKMG 703


>gi|193213289|ref|YP_001999242.1| excinuclease ABC subunit C [Chlorobaculum parvum NCIB 8327]
 gi|193086766|gb|ACF12042.1| excinuclease ABC, C subunit [Chlorobaculum parvum NCIB 8327]
          Length = 629

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 15/134 (11%)

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD-SINKRRN 547
           + L         A   +   +IF    R   +  K    L          +  +I   R 
Sbjct: 503 KALQELGIDVPVAGLAKRLEEIFVPNERDPYNLPKTSPALKLLQQLRDEAHRFAITYHRK 562

Query: 548 ISLERFIFS--LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +R I +   GI+ VG + A  L   + S +  A+     ++               G
Sbjct: 563 LRSDRTIRTELTGIKGVGEKSAEKLLSRFGSVETVAKASIEELSEVT------------G 610

Query: 606 DIIAQAIVEFYQNP 619
              A++I  +++  
Sbjct: 611 RKTAESIYRYFRQQ 624


>gi|330841098|ref|XP_003292541.1| hypothetical protein DICPUDRAFT_83152 [Dictyostelium purpureum]
 gi|325077210|gb|EGC30938.1| hypothetical protein DICPUDRAFT_83152 [Dictyostelium purpureum]
          Length = 479

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---NPG 695
             +  S   EN   VF  T+   ++++  + + + G       ++ T +I   +      
Sbjct: 21  ENQINSKIFENCAFVFDKTINLKRKNQLIKIIKKNGGKSCYSCTKATHLITTKEGYLEKT 80

Query: 696 SKLEKAQQLGVKIM 709
            K+E+A  LG+ I+
Sbjct: 81  QKVEQALSLGIPIL 94


>gi|192361497|ref|YP_001982263.1| excinuclease ABC subunit C [Cellvibrio japonicus Ueda107]
 gi|190687662|gb|ACE85340.1| excinuclease ABC, C subunit [Cellvibrio japonicus Ueda107]
          Length = 612

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 16/76 (21%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            KRR  SLE       I  VGA   R L +++   Q   +             + L +VP
Sbjct: 552 KKRRTSSLE------DIPGVGATRRRELLRHFGGLQEVQKA----------SVVELAKVP 595

Query: 603 LVGDIIAQAIVEFYQN 618
            +   +A+ I  F+ N
Sbjct: 596 GISHKLAEEIYSFFHN 611


>gi|297839591|ref|XP_002887677.1| MEI1 protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333518|gb|EFH63936.1| MEI1 protein [Arabidopsis lyrata subsp. lyrata]
          Length = 970

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 70/186 (37%), Gaps = 16/186 (8%)

Query: 541 SINKRRN-ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           +++  +    L +  F+  +   G    + LA  +L  +     I  ++       LS  
Sbjct: 79  ALSCAKEGRPLPQGGFTCCLAMDGL---KVLASGFLIDEKAM--IKELVTSMGGVLLSKA 133

Query: 600 RVPL---VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFT 655
              +   +   +  A  ++  N + I  +  L +  +   +   E           +  T
Sbjct: 134 SSDVNFVIVKNVLAAKYKWALNKKPIVTLNWLHRCWNEHRVVPQEPYKIPPFSGLTICVT 193

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQF 714
             +   +R   ++ +++ G   SA L++    +I+ D    K + A++ G ++I+  + F
Sbjct: 194 -RIPADERKGMEKVISEYGGNYSAELTKSCTHLILCD----KYKVARKWGHIQIVTRKWF 248

Query: 715 LFLLQQ 720
              + +
Sbjct: 249 QQSIDR 254


>gi|297616982|ref|YP_003702141.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144819|gb|ADI01576.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 461

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 14/76 (18%)

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVV-----SAILSRKTDIIIVG-----DNPGSKLEKAQ 702
             +G+   +++ +  + + + G  V        LS KT++++V      DNP  +++ A+
Sbjct: 31  CVSGS--DLRKSEVTKILEERGIKVYTGHAEGFLSPKTELVVVSSAIPPDNP--EIQAAK 86

Query: 703 QLGVKIMNEEQFLFLL 718
           +LG+ ++   + L LL
Sbjct: 87  RLGIPVIKRGEMLALL 102


>gi|238584143|ref|XP_002390469.1| hypothetical protein MPER_10244 [Moniliophthora perniciosa FA553]
 gi|215453907|gb|EEB91399.1| hypothetical protein MPER_10244 [Moniliophthora perniciosa FA553]
          Length = 390

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPGSKLEKAQQLGVKIMN----EEQFLF 716
           R   ++ +  +GA  +  +S +  ++I  D N G+K E+A    + I+N    E+ F+ 
Sbjct: 213 RDYLKKLIAAMGAQFTPTMSPRNTVLIAADTNNGAKTERAHAWSIPIVNHTWLEDCFVQ 271


>gi|260805410|ref|XP_002597580.1| hypothetical protein BRAFLDRAFT_82314 [Branchiostoma floridae]
 gi|229282845|gb|EEN53592.1| hypothetical protein BRAFLDRAFT_82314 [Branchiostoma floridae]
          Length = 1738

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 620 RNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                 E    + ++ +    ++      +   +  +G L  + R + +  V Q G   S
Sbjct: 169 WIRACWERGKTRHINATDEEFDQYKCRLFQGCVVCVSG-LDSVDRQEIRSQVEQHGGRYS 227

Query: 679 AILS-RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             L  ++   ++  +  G+K E A++  +  +    F   L+
Sbjct: 228 GELRMKECTHLVAKEPKGAKYEFARKWKLHCVTTRWFYDSLE 269



 Score = 38.1 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 650 KKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           K +V +  +++K +R    E V  +G  V+   +     ++ G+    K   A +LG  I
Sbjct: 105 KDVVISCSSVEKQERAMIHELVHLMGGRVAKDFTAMVTHLVAGEVGSKKYHVAVKLGKPI 164

Query: 709 MNEEQFLFLLQQYNTTLRIHDDD 731
           M   +++    +   T  I+  D
Sbjct: 165 M-LPEWIRACWERGKTRHINATD 186


>gi|78184613|ref|YP_377048.1| ATP-dependent DNA ligase [Synechococcus sp. CC9902]
 gi|78168907|gb|ABB26004.1| putative ATP-dependent DNA ligase [Synechococcus sp. CC9902]
          Length = 554

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 39/249 (15%)

Query: 110 FITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA 169
           F+       + +D     + +E K DG    + +      +   RG+    +        
Sbjct: 220 FLASPIDLHRLQDSKPDDWLVEWKWDGIRGQLIHRGHG-TFLWSRGEELVND-------- 270

Query: 170 IPTIPRVLSLN--IPEIIEVRGEVYISK-NDFLALNDEMIAVGRKPYANPRNAASGILRR 226
             + P ++S+   +P+   + GEV   K  D + L  + +          R     IL+R
Sbjct: 271 --SFPELISIGEALPDGTVLDGEVICWKEEDSIPLGFDQLQRRL-----GRKQVGNILKR 323

Query: 227 LNPTDITRYLNFFVHGLGKT------SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHG 280
             P      + F  + L +        E  ++ Q ++L+ +R L  P     R   + H 
Sbjct: 324 ECP------VRFIAYDLLEHKGQDIRQEPISQRQQKLLEVIRTLKHP--EHWRLQQSQHW 375

Query: 281 IVSYYNEMKSIRSTLPYD-IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL 339
            +  ++E+   R        +GL+ K         L  R R   W   +K         L
Sbjct: 376 PLKTWDELDRQRQEARKKHAEGLMLKQRTSPY---LAGRKRGSWWK--YKLDPMNLDAVL 430

Query: 340 LDIDIQIGR 348
           L      GR
Sbjct: 431 LYAQAGRGR 439


>gi|170046595|ref|XP_001850844.1| microcephalin [Culex quinquefasciatus]
 gi|167869331|gb|EDS32714.1| microcephalin [Culex quinquefasciatus]
          Length = 953

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           +    ++ V  LGA V+  L + T  +I  D   S  +KA+++ + +++
Sbjct: 219 RSDGIKDVVASLGAKVNDKLYKDTTHVIFKDGLMSTYQKAKKMNIPVVS 267


>gi|156555682|ref|XP_001602527.1| PREDICTED: similar to CG32133-PA [Nasonia vitripennis]
          Length = 1563

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 613  VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
              +  +  N    + L    +                + +  +G  +  +R K +  +  
Sbjct: 1162 AHWLSDIVNKQ--QNLPPWHALHFPTPFGLTDLPCSKQIISLSG-FEGEERIKVKYMLET 1218

Query: 673  LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +GA  +   SR   +++     G K ++A++    ++N +    LL
Sbjct: 1219 VGAKFTKYFSRHNTLLVCRRPDGPKYKRAREWQTGVVNAQWLTDLL 1264


>gi|24652844|ref|NP_725088.1| microcephalin, isoform A [Drosophila melanogaster]
 gi|23240325|gb|AAF58607.3| microcephalin, isoform A [Drosophila melanogaster]
          Length = 779

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF---TGTLQKIQRHK-AQEYVTQL 673
           N  ++   E  +  +     +   ++   +++  +     TG      R +  +  + ++
Sbjct: 108 NTFDVPLAEQSIITMEERNPQEPPSLPELLKDIVVYVEVRTG---NDNRSEGVKSIIAKM 164

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           GA V   L+R T  ++  D   S  +KA +  + +++
Sbjct: 165 GAQVKDRLTRTTTHVVFKDGLLSTYKKATEWNIPVVS 201


>gi|24652842|ref|NP_610711.1| microcephalin, isoform B [Drosophila melanogaster]
 gi|21483448|gb|AAM52699.1| LD43341p [Drosophila melanogaster]
 gi|23240324|gb|AAF58605.3| microcephalin, isoform B [Drosophila melanogaster]
          Length = 826

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF---TGTLQKIQRHK-AQEYVTQL 673
           N  ++   E  +  +     +   ++   +++  +     TG      R +  +  + ++
Sbjct: 155 NTFDVPLAEQSIITMEERNPQEPPSLPELLKDIVVYVEVRTG---NDNRSEGVKSIIAKM 211

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           GA V   L+R T  ++  D   S  +KA +  + +++
Sbjct: 212 GAQVKDRLTRTTTHVVFKDGLLSTYKKATEWNIPVVS 248


>gi|328723310|ref|XP_003247815.1| PREDICTED: hypothetical protein LOC100575265 [Acyrthosiphon pisum]
          Length = 1575

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 31/61 (50%)

Query: 658  LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             +  +R++ +  +   GA V++  S   +I++     G K++KA+ +   ++N +    +
Sbjct: 1215 FESDERNRVKFMIELTGARVTSYFSADNNILVTRKLEGKKVKKARDINRPVVNVQWLNEI 1274

Query: 718  L 718
            L
Sbjct: 1275 L 1275


>gi|304360722|ref|YP_003856853.1| putative DNA ligase [Clostridium phage phiCTP1]
 gi|302495581|gb|ADL40361.1| putative DNA ligase [Clostridium phage phiCTP1]
          Length = 118

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 31/66 (46%)

Query: 2  KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
          KK+    ++  +  +  + ++   +++  H   YY+    II D+ ++   R    +   
Sbjct: 10 KKQTEEIVQDDNSRKIYELINRRRRQMLIHSIIYYRLDANIIDDTTFNVWGRELLDLQTK 69

Query: 62 FPDLAR 67
          +P++++
Sbjct: 70 YPEISK 75


>gi|126341258|ref|XP_001372465.1| PREDICTED: similar to Soluble liver antigen/liver pancreas antigen
           (Homo sapiens), like [Monodelphis domestica]
          Length = 1178

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 819 VTGFIDG-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVNAQW 877

Query: 714 FLFLL 718
              +L
Sbjct: 878 LCDIL 882


>gi|146093189|ref|XP_001466706.1| hypothetical protein [Leishmania infantum]
 gi|134071069|emb|CAM69750.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 1174

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           +E            H  ++   +  K++  T +L  ++R + Q       A  +++L+R 
Sbjct: 71  IEWATDGACAMESTHRFDIGHGLTGKEVC-TTSLNHLERGRVQAVCGARRATYNSMLTRH 129

Query: 685 TDIIIVGDNPGS--------------KLEKAQQLGVKIMNEEQFLFL 717
            ++++      S              K+  A++ G+ I+  E+F+ L
Sbjct: 130 CELLVASTAALSSILLSSLPTATSNDKVRFARKHGIPIIAMEEFVLL 176


>gi|20089612|ref|NP_615687.1| DNA-dependent DNA polymerase family X protein [Methanosarcina
           acetivorans C2A]
 gi|19914532|gb|AAM04167.1| DNA-directed DNA polymerase, family X [Methanosarcina acetivorans
           C2A]
          Length = 588

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 43/228 (18%)

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT---- 522
           QQ+E       R A NIE LG+  ++  ++ +       IP     +             
Sbjct: 20  QQIEWKPRAYRRAAQNIENLGED-IEKVYEKKGKKGLTEIPGIGEAIADHIAEYLETGKV 78

Query: 523 -KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            K E++ G      T L +                  IR +GA+  + LA      +   
Sbjct: 79  KKFEDLKGKAPSGTTELME------------------IRGLGAKKTKRLAD-----ELKV 115

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP---RNICAVEALLKEVSPSIGR 638
           + I ++ A  N     + R+   G+I  + I    +N     +  A+  +L      I  
Sbjct: 116 KTIPDLKAAVNAH--RIRRLEGFGEISEENIARSLRNYEKSHSRMALGKVLPLAEEIISA 173

Query: 639 HEKNVSSEIENKK-------LVFTGTLQKIQR--HKAQEYVTQLGAVV 677
            +  + +E+ +K        L++TG+L++++             G  V
Sbjct: 174 LKTTLKTELGSKTPEIDFSKLIYTGSLRRLKETIGDIDILAEAEGEQV 221


>gi|281363192|ref|NP_001163123.1| microcephalin, isoform D [Drosophila melanogaster]
 gi|272432443|gb|ACZ94398.1| microcephalin, isoform D [Drosophila melanogaster]
          Length = 1028

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF---TGTLQKIQRHK-AQEYVTQL 673
           N  ++   E  +  +     +   ++   +++  +     TG      R +  +  + ++
Sbjct: 155 NTFDVPLAEQSIITMEERNPQEPPSLPELLKDIVVYVEVRTG---NDNRSEGVKSIIAKM 211

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           GA V   L+R T  ++  D   S  +KA +  + +++
Sbjct: 212 GAQVKDRLTRTTTHVVFKDGLLSTYKKATEWNIPVVS 248


>gi|167648985|ref|YP_001686648.1| leucyl-tRNA synthetase [Caulobacter sp. K31]
 gi|189082990|sp|B0T6E7|SYL_CAUSK RecName: Full=Leucyl-tRNA synthetase; AltName: Full=Leucine--tRNA
           ligase; Short=LeuRS
 gi|167351415|gb|ABZ74150.1| leucyl-tRNA synthetase [Caulobacter sp. K31]
          Length = 861

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 28/140 (20%)

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR-V 401
             Q+G+   + P A      + G  +  A     + I+ +D            R+ D  V
Sbjct: 375 TFQVGKEAYVGPGAIFNSEFLDGLDVEAAKTEAVNRIEAMDQGQGATVY----RLRDWGV 430

Query: 402 LVKRA-GEVIPKV-------VDIIVNERH---PDAQPFSFP------------SFCPICQ 438
             +R  G  IP +       V +  ++     PD   F  P            + CP C 
Sbjct: 431 SRQRYWGCPIPVIHCEACGPVGVPEDQLPVVLPDDVAFDKPGNPLLRHPTWRHTTCPSCG 490

Query: 439 SRVVRDLNPKTGKLVAAHRC 458
            +  R+ +     + ++   
Sbjct: 491 GKAERETDTLDTFVDSSWYF 510


>gi|239610212|gb|EEQ87199.1| chitin biosynthesis protein [Ajellomyces dermatitidis ER-3]
 gi|327355285|gb|EGE84142.1| chitin biosynthesis protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 426

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 645 SEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +++       T G L +  R   +E V ++GA +   +   T   +  +  G+  EKA +
Sbjct: 166 TDLSGIT--ITPGVLPQSLRTSLEEAVDRIGAKLIDTVRIDTTHFVCTEGSGAAWEKAVE 223

Query: 704 LGVKIM 709
           + + ++
Sbjct: 224 MNIPVV 229


>gi|261192727|ref|XP_002622770.1| chitin biosynthesis protein [Ajellomyces dermatitidis SLH14081]
 gi|239589252|gb|EEQ71895.1| chitin biosynthesis protein [Ajellomyces dermatitidis SLH14081]
          Length = 426

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 645 SEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +++       T G L +  R   +E V ++GA +   +   T   +  +  G+  EKA +
Sbjct: 166 TDLSGIT--ITPGVLPQSLRTSLEEAVDRIGAKLIDTVRIDTTHFVCTEGSGAAWEKAVE 223

Query: 704 LGVKIM 709
           + + ++
Sbjct: 224 MNIPVV 229


>gi|281363190|ref|NP_001163122.1| microcephalin, isoform C [Drosophila melanogaster]
 gi|148536819|gb|ABQ85891.1| MCPH1 isoform A [Drosophila melanogaster]
 gi|254693003|gb|ACT79351.1| IP08064p [Drosophila melanogaster]
 gi|272432442|gb|ACZ94397.1| microcephalin, isoform C [Drosophila melanogaster]
          Length = 981

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF---TGTLQKIQRHK-AQEYVTQL 673
           N  ++   E  +  +     +   ++   +++  +     TG      R +  +  + ++
Sbjct: 108 NTFDVPLAEQSIITMEERNPQEPPSLPELLKDIVVYVEVRTG---NDNRSEGVKSIIAKM 164

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           GA V   L+R T  ++  D   S  +KA +  + +++
Sbjct: 165 GAQVKDRLTRTTTHVVFKDGLLSTYKKATEWNIPVVS 201


>gi|323507821|emb|CBQ67692.1| related to DNA topoisomerase II binding protein [Sporisorium
           reilianum]
          Length = 1201

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 16/78 (20%)

Query: 646 EIENKKLVFTG------TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KL 698
            ++   +  TG      TL +  R         LGA V   L+     +I  D PGS K 
Sbjct: 74  PLKGAIISITGLGDTKATLTQYARE--------LGARVEGNLTEDVTHLIA-DRPGSEKY 124

Query: 699 EKAQQLGVKIMNEEQFLF 716
             A +LG+ I++ +  L 
Sbjct: 125 RFALELGMHIVSPDWILE 142


>gi|224047277|ref|XP_002194832.1| PREDICTED: poly (ADP-ribose) polymerase family, member 1
           [Taeniopygia guttata]
          Length = 1135

 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII-----IVGDNPGSKLEK 700
            + N K++  G L K  + + +  V  LG  ++   ++ T  I     +  +    K+E+
Sbjct: 510 PLTNMKILVVGKLSK-NKEEVKSIVEDLGGKMTTTANKATLCISTQKDV--EKMSKKMEE 566

Query: 701 AQQLGVKIMNEEQFLF 716
            ++  V++++E  FL 
Sbjct: 567 VKEAKVRVVSEA-FLQ 581


>gi|49118667|gb|AAH73696.1| ECT2 protein [Xenopus laevis]
          Length = 985

 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 52/175 (29%), Gaps = 44/175 (25%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI----- 636
             +   +  +  ++ S+  +              +Q P      +A  + + P I     
Sbjct: 110 DSVEEFVEADTPEFESVFVISD------------FQKPSYRFLYKADCRVLGPPIIFYCA 157

Query: 637 --GRHEKNVSSEIE-----NKKLVFTGTLQKIQRHK----AQEYVTQLGAVVSAILSRKT 685
             G      S  +      N  L FTG     +R +        V  +G  +    S K 
Sbjct: 158 QKGEPLPFTSRPLYCANMLNLVLCFTG----FRRKEELVKLVTLVHHMGGTIRKDFSSKV 213

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIM------------NEEQFLFLLQQYNTTLRIH 728
             +I     G K   A  LG  IM            NE +F    +++    ++ 
Sbjct: 214 THLIANSTHGDKFRVAVSLGTPIMKADWIFQAWEKRNELEFSATNEEFKNQFKVP 268


>gi|147898975|ref|NP_001084407.1| epithelial cell transforming 2 [Xenopus laevis]
 gi|39983003|gb|AAR34457.1| epithelial cell transforming 2 [Xenopus laevis]
          Length = 910

 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 52/175 (29%), Gaps = 44/175 (25%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI----- 636
             +   +  +  ++ S+  +              +Q P      +A  + + P I     
Sbjct: 110 DSVEEFVEADTPEFESVFVISD------------FQKPSYRFLYKADCRVLGPPIIFYCA 157

Query: 637 --GRHEKNVSSEIE-----NKKLVFTGTLQKIQRHK----AQEYVTQLGAVVSAILSRKT 685
             G      S  +      N  L FTG     +R +        V  +G  +    S K 
Sbjct: 158 QKGEPLPFTSRPLYCANMLNLVLCFTG----FRRKEELVKLVTLVHHMGGTIRKDFSSKV 213

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIM------------NEEQFLFLLQQYNTTLRIH 728
             +I     G K   A  LG  IM            NE +F    +++    ++ 
Sbjct: 214 THLIANSTHGDKFRVAVSLGTPIMKADWIFQAWEKRNELEFSATNEEFKNQFKVP 268


>gi|15893799|ref|NP_347148.1| excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824]
 gi|21363070|sp|Q97LP6|UVRC_CLOAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|15023370|gb|AAK78488.1|AE007565_7 Excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824]
 gi|325507922|gb|ADZ19558.1| excinuclease ABC subunit C [Clostridium acetobutylicum EA 2018]
          Length = 623

 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 39/79 (49%), Gaps = 12/79 (15%)

Query: 541 SINKRRNISLERFIFSL--GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +I   R++  +R + S+   I ++G +  ++L K++ S +N  +            +  L
Sbjct: 550 AITYHRSLRDKRVLHSVLDDIPYIGEKRRKALLKHFGSIENIKKAT----------YEEL 599

Query: 599 IRVPLVGDIIAQAIVEFYQ 617
           ++ P +    A++IV +++
Sbjct: 600 MKTPSIDKKAAESIVSYFR 618


>gi|317027693|ref|XP_001399857.2| RNA polymerase II subunit A C-terminal domain phosphatase
           [Aspergillus niger CBS 513.88]
          Length = 800

 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 647 IENKKLVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +    LVF+G L             +    GAV+++ ++  T  ++ G N   K+ +A +
Sbjct: 491 LGGVTLVFSGVLPLGTDTQNADIXLWAKSFGAVIASKINMXTTHLVAGRNRTXKVREATR 550

Query: 704 L-GVKIMNEEQFLFLLQQYN 722
              VKI+  +  L  L Q+ 
Sbjct: 551 YPKVKIVTTQWLLDCLTQWK 570


>gi|119478435|ref|ZP_01618420.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2143]
 gi|119448521|gb|EAW29768.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2143]
          Length = 625

 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 16/76 (21%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            KRR   LE      GI  VG +  R L +++  +Q        + A + DD      +P
Sbjct: 565 KKRRESPLE------GIPGVGPKRRRELLRHFGGWQ-------EVKAASADDLA---NIP 608

Query: 603 LVGDIIAQAIVEFYQN 618
            + D +A+ IV    N
Sbjct: 609 GISDKLARDIVAALHN 624


>gi|170108172|ref|XP_001885295.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639771|gb|EDR04040.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 909

 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV---FTGTLQKIQRHKAQEYVTQLGA 675
               C  E  +  V   +      +   +   + V    +G L +   H  +  +  +G 
Sbjct: 468 WLERCLHEERVCPVEDHVANVPLAIRIPVPGAESVRMSLSG-LDEADAHGIKRLMRAIGL 526

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           V+  + S+K   ++     G K +KAQ+ G+ +++
Sbjct: 527 VIPPVFSKKATHLLCPSGTGLKFDKAQEWGIPVVS 561



 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
               +N  +  TG + K      ++ +  LGA      + +   ++  D+ G+K   A +
Sbjct: 53  PRPFKNIVVCATGVVDKPT--LFKQALE-LGATSVTAFTDRVTHLVAKDHGGAKYMCALE 109

Query: 704 LGVKIM 709
             + I+
Sbjct: 110 RKIPIL 115


>gi|73979037|ref|XP_539928.2| PREDICTED: similar to PAX interacting (with
           transcription-activation domain) protein 1 [Canis
           familiaris]
          Length = 1198

 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N  Q
Sbjct: 804 VTGFVDS-DRDDLKLMACLAGAKYTGYLCRSNTVLICKEPIGLKYEKAKEWRIPCVN-AQ 861

Query: 714 FLF--LLQQYNTTLRIH 728
           +L   LL  +    ++H
Sbjct: 862 WLGDILLGNFEALRQVH 878


>gi|152964622|ref|YP_001360406.1| ATP-dependent DNA ligase [Kineococcus radiotolerans SRS30216]
 gi|151359139|gb|ABS02142.1| ATP dependent DNA ligase [Kineococcus radiotolerans SRS30216]
          Length = 353

 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 71/233 (30%), Gaps = 41/233 (17%)

Query: 111 ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170
           + +       + D    +  EPK DG    +  +  +   ++  G G +        R  
Sbjct: 16  LAKAASGLPPQPDGDPAWLYEPKWDGFRCVVFRDGEEVELSSRNGRGLT--------RYF 67

Query: 171 PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
           P +   +   +PE   V GE+++       L+ ++++    P       A+  +  L   
Sbjct: 68  PEVVAAVRAELPERCVVDGELFVPGPGGGRLSWDLLSQRIHP-------AASRVELLAVE 120

Query: 231 DITRYLNFFVHGLGKTSEIFAKG--QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288
              +++ F +  LG      A    + E L+       P  +             ++   
Sbjct: 121 TPAQFVAFDLLALGGEDLTGASTAVRRERLETALAGCGPTTHVTTATRDADVAARWFTTF 180

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
           +         +DG+V K  +                        ++  T++  
Sbjct: 181 E------GAGLDGVVAKPLDSPY------------------LPGERVMTKVKH 209


>gi|188997399|ref|YP_001931650.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932466|gb|ACD67096.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 299

 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI-NKRRNISLERFIFSLGIRH 561
            I     IF   + +     KI+   G       +    I +   NI         GI+ 
Sbjct: 140 LISDNIKIFNPVKEELLDKEKIKEKYGIHPQQFIDYLTMIGDAVDNIP--------GIKG 191

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           +G + A +L + + S +N  + ++ +     + +  
Sbjct: 192 IGPKTAAALLQEFGSLENILENVDKLKGKLKESFKE 227


>gi|300087916|ref|YP_003758438.1| methenyltetrahydrofolate cyclohydrolase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527649|gb|ADJ26117.1| Methenyltetrahydrofolate cyclohydrolase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 295

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 22/84 (26%)

Query: 663 RHKAQE---YVTQLGAVVSAILSRKTDIIIVGDNP------GSKLEKAQQLGV-----KI 708
           R + +     +     +V  + +     +IVGD+P      GSK+   ++LG+      +
Sbjct: 16  REELKAEVAALKDRHGIVPGLAT-----VIVGDDPASQTYVGSKIRACKELGIHSANFPM 70

Query: 709 M---NEEQFLFLLQQYNTTLRIHD 729
           +    E + L L+ + NT   IH 
Sbjct: 71  LAETTEVELLELIDRLNTDPAIHG 94


>gi|255994795|ref|ZP_05427930.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
 gi|255993508|gb|EEU03597.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
          Length = 464

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 13/83 (15%)

Query: 659 QKIQRHKAQEYVTQLGAVVS-----AILSRKTDIII-----VGDNPGSKLEKAQQLGVKI 708
             ++   + + +  +GA V+       +    D++I       DNP  +L KA+ LG+K+
Sbjct: 37  SDMRESDSTDKLISMGARVALGHMAKNVKEDIDLVIYTAAIADDNP--ELLKAKSLGIKL 94

Query: 709 MNEEQFLFLL-QQYNTTLRIHDD 730
           +   + L +L  +YNT++ I   
Sbjct: 95  LTRAEALGMLMSEYNTSIAISGT 117


>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 929

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 75/209 (35%), Gaps = 16/209 (7%)

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ--RRQQTSTTKIENILGFGDVSVT 536
           +A +I G   +Q +    +       +    + +      +     K   I G  +V   
Sbjct: 110 EADDIIGTLAKQAEKQGYTVYMVTPDKDYGQLVSPNIFMYKPARGGKDTEIWGVEEVKEN 169

Query: 537 NLYDSINKRRNISLERFIFSL----GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
              D+  +  ++ L     ++    G+  VG + A+ L K + S +N     + +     
Sbjct: 170 FGVDTPEQVIDL-LGMMGDAVDNIPGLPGVGEKTAQKLLKEFGSMENLLANTDKLKGKLR 228

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           ++  +     ++   +A+ I++         + +    E+S         +  ++E + +
Sbjct: 229 ENIQANKDKGILSKTLARIILD------VPVSFDEKDFELSSPKMEEIIPLFDQLEFRTM 282

Query: 653 VFTGTLQK-IQRHKAQEYVTQLGAVVSAI 680
             T TLQK   + + Q  +  +G   +  
Sbjct: 283 -LT-TLQKAFTKEETQPNLFSIGQKATNS 309


>gi|307352953|ref|YP_003894004.1| helicase domain-containing protein [Methanoplanus petrolearius DSM
           11571]
 gi|307156186|gb|ADN35566.1| helicase domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 766

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 12/71 (16%)

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           +    SLE  I S     +G + AR L  ++ S Q+            N +   L  VP 
Sbjct: 701 RSERESLEYVISSF--PSIGPKNARDLLDHFGSIQDIM----------NANIEELKVVPG 748

Query: 604 VGDIIAQAIVE 614
           +GD IA+++ E
Sbjct: 749 IGDKIAKSVFE 759


>gi|21674621|ref|NP_662686.1| excinuclease ABC, subunit C [Chlorobium tepidum TLS]
 gi|32130301|sp|Q8KBI0|UVRC_CHLTE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|21647822|gb|AAM73028.1| excinuclease ABC, subunit C [Chlorobium tepidum TLS]
          Length = 626

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 15/132 (11%)

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD-SINKRRN 547
           Q L         A   +   +I+        +  K    L          +  +I   R 
Sbjct: 502 QVLQELGLDLPVAGLAKRLEEIYVPNEPDPYNLPKTSPALKLLQQLRDEAHRFAITYHRK 561

Query: 548 ISLERFIFS--LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +R I +   GI+ VG + A  L K++ S ++ ++   + ++               G
Sbjct: 562 LRSDRTIRTELTGIKGVGEKSAEKLLKHFGSVESVSKASIDELSAVA------------G 609

Query: 606 DIIAQAIVEFYQ 617
              A++I  ++ 
Sbjct: 610 RKTAESIYRYFN 621


>gi|315655489|ref|ZP_07908388.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333]
 gi|315490144|gb|EFU79770.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333]
          Length = 693

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           +    D S      +  ++R  ++ R I       VG    ++L K++ S +   +    
Sbjct: 606 LQYLRDESHRFAISAHRQKRARAMTRSILDAA-PGVGPAKQKALLKHFGSVKRLREASAA 664

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
            IA           VP  G   A+ +V F  N  N
Sbjct: 665 EIA----------EVPGFGLKTAENLVAFLNNSGN 689


>gi|309365370|emb|CAP23347.2| CBR-MUS-101 protein [Caenorhabditis briggsae AF16]
          Length = 1175

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQ 703
            E  ++  + ++  + R    + V + G  VS  +S+     +I     G K  KA +
Sbjct: 231 FEGLEISIS-SIDGVDRTNLIQLVEEHGGRVSGNMSKNRCSHLITDKTSGQKYLKASE 287


>gi|268566641|ref|XP_002639775.1| C. briggsae CBR-MUS-101 protein [Caenorhabditis briggsae]
          Length = 1175

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQ 703
            E  ++  + ++  + R    + V + G  VS  +S+     +I     G K  KA +
Sbjct: 231 FEGLEISIS-SIDGVDRTNLIQLVEEHGGRVSGNMSKNRCSHLITDKTSGQKYLKASE 287


>gi|66810926|ref|XP_639170.1| hypothetical protein DDB_G0283159 [Dictyostelium discoideum AX4]
 gi|60467803|gb|EAL65818.1| hypothetical protein DDB_G0283159 [Dictyostelium discoideum AX4]
          Length = 656

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 640 EKNVSSEIENKKLVF---TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----D 692
           E+      + K       T +L   ++ +  +++ + G  +   ++ KT+  I      +
Sbjct: 33  EEIEQLFFKGKSFCLDFPT-SLGPTKKSQYTQFIKKNGGKIDFSITSKTNYYITHLPNIE 91

Query: 693 NPGSKLEKAQQLGVKIM 709
           +  S+ + A +L + I+
Sbjct: 92  SQSSRTKNALKLNIGIL 108


>gi|242309143|ref|ZP_04808298.1| translation initiation factor IF-2 [Helicobacter pullorum MIT
           98-5489]
 gi|239524184|gb|EEQ64050.1| translation initiation factor IF-2 [Helicobacter pullorum MIT
           98-5489]
          Length = 882

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 654 FTGTLQKIQRHKAQEYVTQLG--AVVSAILS---RKTDIIIVGDN---PGSKLEKAQQLG 705
             G+L+K+Q  + +  +   G   +  + ++     T+ +I+G N    GS   KA++LG
Sbjct: 696 IRGSLEKLQNDEVKVNIIHKGVGGITESDITLAAASTNCVILGFNVRPTGSVKNKAKELG 755

Query: 706 VKIMNEEQFLFLLQQYNT 723
           ++I        L+     
Sbjct: 756 IEIKTYSIIYALIDDIKA 773


>gi|304389347|ref|ZP_07371312.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327465|gb|EFL94698.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 693

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           +    D S      +  ++R  ++ R I       VG    ++L +++ S +   +    
Sbjct: 606 LQYLRDESHRFAISAHRQKRARAMTRSILDAA-PGVGPAKQKALLRHFGSVKRLREASAA 664

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
            IA           VP  G   A+ +V F  N  N
Sbjct: 665 EIA----------EVPGFGLKTAENLVAFLNNSGN 689


>gi|148222347|ref|NP_001088296.1| epithelial cell transforming sequence 2 oncogene [Xenopus laevis]
 gi|54038450|gb|AAH84325.1| Ect2 protein [Xenopus laevis]
          Length = 986

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 24/154 (15%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
             +   +  +  ++ S+  +              +Q P      +A  + + P I  +  
Sbjct: 110 DSVEEFVEADTPEFESVFVISD------------FQKPAYRFLYKADCRVLGPPIILYCA 157

Query: 642 NVSSEIE------------NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
                +             N  L FTG  +K +  K    V  +G  +    S K   +I
Sbjct: 158 QKGEPLPFTSRPLYCANMLNLVLCFTGFRKKEELVKLVNLVHHMGGTIRKDFSSKVTHLI 217

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
                G K   A  LG  IM  +  +   ++ N 
Sbjct: 218 ANSTHGDKFRVAVSLGTPIMRADWIIQAWEKRNE 251


>gi|330797095|ref|XP_003286598.1| hypothetical protein DICPUDRAFT_150569 [Dictyostelium purpureum]
 gi|325083423|gb|EGC36876.1| hypothetical protein DICPUDRAFT_150569 [Dictyostelium purpureum]
          Length = 688

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                     +  +     F+GT   + + +  + V   G+  +  ++ K   ++     
Sbjct: 12  EGDNTSTTAKNFFDGIIFSFSGTFS-VTQSELIKKVENHGSSTAKGVTLKVTHLVSTAED 70

Query: 695 GSKL----EKAQQLGVKIMNEE 712
             K     +KA++ G+ I++E+
Sbjct: 71  FKKNSASVQKAKKQGIFIVSEQ 92


>gi|314934927|ref|ZP_07842286.1| site-specific recombinase [Staphylococcus caprae C87]
 gi|313652857|gb|EFS16620.1| site-specific recombinase [Staphylococcus caprae C87]
          Length = 449

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 21/130 (16%)

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R P          CP C + +      K   ++  + C   L              SR 
Sbjct: 254 KRTPSDNQLKQKIKCPYCNATLTNMTVRKKNHILRYYVCPKNLN------------ASRF 301

Query: 480 AFNIEGLGKQQLD--------FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
             + +G+  Q L+         F++       I+   D   L+R++ T T          
Sbjct: 302 VCDFKGINAQTLEDKVLKVCQDFYQDHHIYAKIKNAIDK-RLKRQRNTETHHTLTQEKLI 360

Query: 532 DVSVTNLYDS 541
           +     + D+
Sbjct: 361 EKLAQGIIDA 370


>gi|327289728|ref|XP_003229576.1| PREDICTED: bifunctional methylenetetrahydrofolate
           dehydrogenase/cyclohydrolase, mitochondrial-like [Anolis
           carolinensis]
          Length = 355

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 17/91 (18%)

Query: 652 LVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS------KLEKAQQL 704
           +V +G  L +  R +A+  V Q   V +        +++VG+NP S      K + A  +
Sbjct: 51  VVISGRKLARQIRQEARHEVEQW--VAAGNRRPHLSVVLVGENPASHSYVLNKTKAAADV 108

Query: 705 GV---KI-----MNEEQFLFLLQQYNTTLRI 727
           G+    I     + EE+ L L+ + N   ++
Sbjct: 109 GISSETILKPSSITEEELLDLITRLNGDAKV 139


>gi|67903446|ref|XP_681979.1| hypothetical protein AN8710.2 [Aspergillus nidulans FGSC A4]
 gi|40741069|gb|EAA60259.1| hypothetical protein AN8710.2 [Aspergillus nidulans FGSC A4]
 gi|259483096|tpe|CBF78187.1| TPA: chitin biosynthesis protein (Chs5), putative (AFU_orthologue;
           AFUA_6G02510) [Aspergillus nidulans FGSC A4]
          Length = 425

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           +++     V TG L   ++    E + ++G  +   +   T   +  +  G   EKA ++
Sbjct: 166 TDLSGIT-VTTGVLHPQRKEALAEALDRIGGKLIDTVRIDTTHFVCTEGRGPLWEKAVEM 224

Query: 705 GVKIM 709
            + ++
Sbjct: 225 NIPVV 229


>gi|326427718|gb|EGD73288.1| hypothetical protein PTSG_05004 [Salpingoeca sp. ATCC 50818]
          Length = 1057

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV-SAILSRKTDIIIVGD-----NP 694
           +  +  +    +   G L +  +   ++ +T LG  V +  +      ++  D       
Sbjct: 425 EQDTGPLSGLFIAIAGRLSQ-SQPAIKKRITALGGNVHTGAVGSVVTCVLSSDAEVEKET 483

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             K++ A   GV I++ +      +Q+   L
Sbjct: 484 NKKIKDAINFGVPIVSLDFLDDCEKQHKCAL 514


>gi|302918664|ref|XP_003052702.1| hypothetical protein NECHADRAFT_5257 [Nectria haematococca mpVI
           77-13-4]
 gi|256733642|gb|EEU46989.1| hypothetical protein NECHADRAFT_5257 [Nectria haematococca mpVI
           77-13-4]
          Length = 265

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           +++    +  TG L    +    + V ++GA +   +   T   +  +  G + EKA + 
Sbjct: 166 TDLSGITIT-TGILPGTTKENLIKAVERIGAKIVEGVRIDTTHFVTTEGRGQQWEKAVES 224

Query: 705 GVKIM 709
            + ++
Sbjct: 225 NIPVV 229


>gi|50345014|ref|NP_001002181.1| bifunctional methylenetetrahydrofolate
           dehydrogenase/cyclohydrolase, mitochondrial [Danio
           rerio]
 gi|292614394|ref|XP_002662245.1| PREDICTED: bifunctional methylenetetrahydrofolate
           dehydrogenase/cyclohydrolase, mitochondrial-like [Danio
           rerio]
 gi|49257529|gb|AAH74043.1| Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2,
           methenyltetrahydrofolate cyclohydrolase [Danio rerio]
 gi|148726038|emb|CAN87845.1| methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2,
           methenyltetrahydrofolate cyclohydrolase [Danio rerio]
 gi|160773259|gb|AAI55263.1| Mthfd2 protein [Danio rerio]
          Length = 338

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 17/91 (18%)

Query: 652 LVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS------KLEKAQQL 704
           +V +G  L +  R++A++ V +   V +        +++VGDNP S      K   A ++
Sbjct: 31  VVISGRKLARQIRNEARDDVEEW--VSAGNRRPHLSVVLVGDNPASHSYVLNKTRAAAEV 88

Query: 705 GV---KI-----MNEEQFLFLLQQYNTTLRI 727
           G+    I     ++EE+ L L+ + N+  R+
Sbjct: 89  GISSETILKPSNISEEELLDLIVKLNSDHRV 119


>gi|70907178|gb|AAZ15231.1| methylenetetrahydrofolate dehydrogenase [Danio rerio]
          Length = 338

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 17/91 (18%)

Query: 652 LVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS------KLEKAQQL 704
           +V +G  L +  R++A++ V +   V +        +++VGDNP S      K   A ++
Sbjct: 31  VVISGRKLARQIRNEARDDVEEW--VSAGNRRPHLSVVLVGDNPASHSYVLNKTRAAAEV 88

Query: 705 GV---KI-----MNEEQFLFLLQQYNTTLRI 727
           G+    I     ++EE+ L L+ + N+  R+
Sbjct: 89  GISSETILKPSNISEEELLDLIVKLNSDHRV 119


>gi|328870578|gb|EGG18952.1| hypothetical protein DFA_02692 [Dictyostelium fasciculatum]
          Length = 412

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 643 VSSEIENKKLVFTGT-LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           +S   E+  +VF GT + + +  K  E + + G  ++  +++KT I+I  D+    + KA
Sbjct: 1   MSEIFESDVIVFLGTPVNQDEHDKLVEKIEEAGGTIARAINKKTTIVIC-DDISVDVSKA 59

Query: 702 QQLGVKI-----MNE 711
             L V +     ++E
Sbjct: 60  TTLSVPVAKSEYISE 74


>gi|328780253|ref|XP_394416.4| PREDICTED: DNA topoisomerase 2-binding protein 1-like [Apis
           mellifera]
          Length = 1297

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
              P         ++ +    +  +G L   ++   ++ V  +G + +  L      +I 
Sbjct: 97  NGEPIPEGKSPIYTTAMRGLCICASG-LSPEEKEHIEKLVEYMGGIFTKQLRSCVTHLIT 155

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
                +K E A  + + I+  ++++  + + N    I  D+
Sbjct: 156 ASVMSAKYETAIDMKIPIVT-KEWVEAIWETNLNNFIKADN 195


>gi|226288832|gb|EEH44344.1| RNA polymerase II C-terminal domain phosphatase component
           [Paracoccidioides brasiliensis Pb18]
          Length = 920

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 647 IENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +++  LVF+G L     +Q      +    GA +S  ++ +T  ++ G N  +K+ +A +
Sbjct: 496 LDSVVLVFSGVLPLGTDMQNADISMWAKSFGATISNKINLRTTHLVAGRNRTAKVREATR 555

Query: 704 L-GVKIMNEEQFLFLLQQYN 722
              VKI+  +  L  + Q+ 
Sbjct: 556 YPNVKIVTVQWLLDSITQWK 575


>gi|300121145|emb|CBK21526.2| unnamed protein product [Blastocystis hominis]
          Length = 442

 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 658 LQKIQRHKAQEYVTQLG-AVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFL 715
           L +  R      V+ LG A   +  SR  ++++ G +  S K+  A   G+ ++      
Sbjct: 254 LSEADRDVLISLVSSLGDAKFISRSSRSINLLVAGQDVRSVKMMCAVARGIPVVTPAWLY 313

Query: 716 FLLQQYN 722
             L+Q  
Sbjct: 314 ACLEQGK 320


>gi|302497759|ref|XP_003010879.1| hypothetical protein ARB_02918 [Arthroderma benhamiae CBS 112371]
 gi|291174424|gb|EFE30239.1| hypothetical protein ARB_02918 [Arthroderma benhamiae CBS 112371]
          Length = 1048

 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 652 LVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
           LVF+G L             +    GA +++ ++ +T  ++ G N  +K+ +A +   +K
Sbjct: 729 LVFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYPKIK 788

Query: 708 IMNEEQFL------FLLQQYNTTLRIHDDD 731
           I+  +  L        L +    + +H DD
Sbjct: 789 IVTVQWLLDCMIQWKHLDEEPYLVPVHPDD 818


>gi|291397414|ref|XP_002715102.1| PREDICTED: PAX interacting protein 1 [Oryctolagus cuniculus]
          Length = 1053

 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 698 VTGFVDN-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 756

Query: 714 FLFLL 718
              +L
Sbjct: 757 LGDIL 761


>gi|327274412|ref|XP_003221971.1| PREDICTED: hypothetical protein LOC100556253, partial [Anolis
           carolinensis]
          Length = 1103

 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L     ++I  +  G K EKA++  +  +N + 
Sbjct: 747 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCHSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 805

Query: 714 FLFLL 718
              +L
Sbjct: 806 LCDIL 810


>gi|157823411|ref|NP_001101314.1| PAX-interacting protein 1 [Rattus norvegicus]
 gi|149031419|gb|EDL86409.1| PAX interacting (with transcription-activation domain) protein 1
           (predicted) [Rattus norvegicus]
          Length = 824

 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 469 VTGFVDN-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVNAQW 527

Query: 714 FLFLL 718
              +L
Sbjct: 528 LGDIL 532


>gi|4336734|gb|AAD17923.1| Pax transcription activation domain interacting protein PTIP [Mus
           musculus]
          Length = 1056

 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 700 VTGFVDN-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVNAQW 758

Query: 714 FLFLL 718
              +L
Sbjct: 759 LGDIL 763


>gi|42734451|ref|NP_061366.2| PAX-interacting protein 1 [Mus musculus]
 gi|81885070|sp|Q6NZQ4|PAXI1_MOUSE RecName: Full=PAX-interacting protein 1; AltName: Full=PAX
           transactivation activation domain-interacting protein
 gi|41946080|gb|AAH66014.1| PAX interacting (with transcription-activation domain) protein 1
           [Mus musculus]
 gi|74194717|dbj|BAE25965.1| unnamed protein product [Mus musculus]
 gi|148705275|gb|EDL37222.1| PAX interacting (with transcription-activation domain) protein 1,
           isoform CRA_a [Mus musculus]
          Length = 1056

 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 700 VTGFVDN-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVNAQW 758

Query: 714 FLFLL 718
              +L
Sbjct: 759 LGDIL 763


>gi|71003542|ref|XP_756437.1| hypothetical protein UM00290.1 [Ustilago maydis 521]
 gi|46096042|gb|EAK81275.1| hypothetical protein UM00290.1 [Ustilago maydis 521]
          Length = 1206

 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                 +      +        + +  ++   +  TG L  ++     +Y  +LGA V  
Sbjct: 55  HFRRLRDDGHDHGAHLDADFIGSSARPLKGAIISITG-LSDLK-PILTQYARELGARVEG 112

Query: 680 ILSRKTDIIIVGDNPGS-KLEKAQQLGVKIM 709
            L+     +I  D PGS K   A QLG+ I+
Sbjct: 113 NLTEDVTHLIA-DRPGSEKYRFALQLGMHII 142


>gi|317420080|emb|CBN82116.1| DNA topoisomerase 2-binding protein 1 [Dicentrarchus labrax]
          Length = 1474

 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L K  R +  + V  +G  V   L+     +I G+    K   A  LG  I+
Sbjct: 116 SLDKAIRTEVMDLVQLMGGRVYLDLNVSVTHLIAGEVGSKKYLVAASLGKPIL 168


>gi|313227658|emb|CBY22805.1| unnamed protein product [Oikopleura dioica]
          Length = 1125

 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 559 IRHVGAEIARSLAKY-------YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           I H G E+++ LA         +          + I+    +D+L    +    +  A  
Sbjct: 12  IGHAGDELSKKLADSVTNGGGIFDKNGVTKDTTHAILFGAQNDYLK--EIEKAVENGAAV 69

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +   +    +I       ++V     +     S    +     +G L +  + K    VT
Sbjct: 70  VHPRWLEVCSI-----HRQKVPVQPFKMMPGPSPLFSDMVFTASG-LSRDDKIKLAALVT 123

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
             G   +  L++KT  ++     G K ++A  L ++ +
Sbjct: 124 FHGGKYTRALNQKTTHLVTHKPVGEKYDRA--LNIESI 159


>gi|313222637|emb|CBY41661.1| unnamed protein product [Oikopleura dioica]
          Length = 701

 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 559 IRHVGAEIARSLAKY-------YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           I H G E+++ LA         +          + I+    +D+L    +    +  A  
Sbjct: 12  IGHAGDELSKKLADSVTNGGGIFDKNGVTKDTTHAILFGAQNDYLK--EIEKAVENGAAV 69

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +   +    +I       ++V     +     S    +     +G L +  + K    VT
Sbjct: 70  VHPRWLEVCSI-----HRQKVPVQPFKMMPGPSPLFSDMVFTASG-LSRDDKIKLAALVT 123

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
             G   +  L++KT  ++     G K ++A  L ++ +
Sbjct: 124 FHGGKYTRALNQKTTHLVTHKPVGEKYDRA--LNIESI 159


>gi|239612946|gb|EEQ89933.1| BRCT domain-containing protein [Ajellomyces dermatitidis ER-3]
          Length = 895

 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E+          +  TG      R+  Q+ +T  GA     L++    +I       K 
Sbjct: 100 EEQYRYPTFAGLSICLTGFDDMNHRNSLQKTITDNGAEFRRDLTKSVTHLIARSGYSQKY 159

Query: 699 EKAQQLGVKIMN 710
           + A    + +++
Sbjct: 160 KYAMLWKITVVS 171


>gi|54400364|ref|NP_001005929.1| PAX-interacting protein 1 [Danio rerio]
 gi|82180519|sp|Q5XIY8|PAXI1_DANRE RecName: Full=PAX-interacting protein 1; AltName: Full=PAX
           transactivation activation domain-interacting protein
 gi|53733383|gb|AAH83530.1| PAX interacting (with transcription-activation domain) protein 1
           [Danio rerio]
          Length = 943

 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 775 VTGFVDS-DRDDLKLMAYLAGARYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVNAQW 833

Query: 714 FLFLL 718
              +L
Sbjct: 834 LCDIL 838


>gi|189499391|ref|YP_001958861.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1]
 gi|189494832|gb|ACE03380.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1]
          Length = 382

 Score = 39.6 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +G    R+L + + +           +A           +P +G  +A+ I +F+++
Sbjct: 22  VPGLGPARIRALKRQFGTSNAIFHADERALAV----------IPGIGRKLARTITDFFRS 71

Query: 619 PRNICAVEA 627
           PRN+     
Sbjct: 72  PRNLDLARK 80


>gi|300811641|ref|ZP_07092117.1| tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
           protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313124105|ref|YP_004034364.1| methylenetetrahydrofolate dehydrogenase
           (nadp+)/methenyltetrahydrofolate cyclohydrolase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|300497342|gb|EFK32388.1| tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
           protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312280668|gb|ADQ61387.1| Methylenetetrahydrofolate dehydrogenase
           (NADP+)/methenyltetrahydrofolate cyclohydrolase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 283

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 18/76 (23%)

Query: 666 AQEYVTQLGAVVSA----ILSRKTDIIIVGDNPGSKL------EKAQQLGVKIM------ 709
           A+E   +LG+ V++     +S K  +I +GD+P SK+       KA++LG+K +      
Sbjct: 11  ARELGEKLGSEVASLKEHGVSPKLCVINIGDDPASKVYVASKKRKAEKLGIKQVVYQLPA 70

Query: 710 --NEEQFLFLLQQYNT 723
             +EE  L L+   N 
Sbjct: 71  DESEEDVLKLIDSLNA 86


>gi|328868151|gb|EGG16531.1| poly(ADP-ribosyl)transferase [Dictyostelium fasciculatum]
          Length = 721

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII---VGDNPGS 696
            KN S+ +    +  +G+     + +    +  +GA  +   S K   ++      N GS
Sbjct: 13  PKNASNMLSGCVVALSGSTFTQSQGELVSLLESIGAQTAKTYSAKVTHVLTTQADYNKGS 72

Query: 697 -KLEKAQQLGVKIMNEE 712
             ++KA   G+ +++E+
Sbjct: 73  VTIKKALDAGIFVVSED 89


>gi|218184890|gb|EEC67317.1| hypothetical protein OsI_34337 [Oryza sativa Indica Group]
          Length = 430

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 33/161 (20%)

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSL-GIRHVGAEIARSLAKYYLSYQNFAQE 583
           E I  + + S  ++ + +    N  L R   +L  IRHV      +L   + S       
Sbjct: 257 ETIKVYENKSADSIREHME---NDYLSRLTHALTSIRHVNKTDVVTLGSSFGSLSQVMNA 313

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
               +A          R P +G+   + + + +  P     V +    V P     EK  
Sbjct: 314 SMEELA----------RCPGIGERKVKRLHDTFHEPFKR--VSSRPNIVVPDTPDREKAS 361

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
                                 AQ+ V        A +++K
Sbjct: 362 GQP-------------SSTNDGAQDAVE----KPDASVNKK 385


>gi|71897117|ref|NP_001026531.1| bifunctional methylenetetrahydrofolate
           dehydrogenase/cyclohydrolase, mitochondrial [Gallus
           gallus]
 gi|82082041|sp|Q5ZKA5|MTDC_CHICK RecName: Full=Bifunctional methylenetetrahydrofolate
           dehydrogenase/cyclohydrolase, mitochondrial; Includes:
           RecName: Full=NAD-dependent methylenetetrahydrofolate
           dehydrogenase; Includes: RecName:
           Full=Methenyltetrahydrofolate cyclohydrolase; Flags:
           Precursor
 gi|53131685|emb|CAG31838.1| hypothetical protein RCJMB04_12b8 [Gallus gallus]
          Length = 337

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 17/86 (19%)

Query: 652 LVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS------KLEKAQQL 704
           +V +G  L +  R +A+  V Q   V +        +++VG+NP S      K + A  +
Sbjct: 33  VVISGRKLARQIRQEARHEVEQW--VAAGNKRPHLSVVLVGENPASHSYVLNKTKAAADV 90

Query: 705 GV---KI-----MNEEQFLFLLQQYN 722
           G+    I     + EE+ L L+ + N
Sbjct: 91  GISSETILKPASITEEELLDLISKLN 116


>gi|296166805|ref|ZP_06849223.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897821|gb|EFG77409.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 330

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQQLGVKIMNEEQFLF 716
            +  E +   G   S  + R+T ++I  D      K   A+QLG+ ++++ QF+ 
Sbjct: 249 EELVERILHAGLAYSDAVDRETSLVICNDPAPDQGKGYLARQLGIPVISDAQFME 303


>gi|332870230|ref|XP_001144943.2| PREDICTED: hypothetical protein LOC463836 isoform 3 [Pan
           troglodytes]
          Length = 1020

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 664 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 722

Query: 714 FLFLL 718
              +L
Sbjct: 723 LGDIL 727


>gi|297682070|ref|XP_002818754.1| PREDICTED: PAX-interacting protein 1-like isoform 2 [Pongo abelii]
          Length = 1024

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 668 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 726

Query: 714 FLFLL 718
              +L
Sbjct: 727 LGDIL 731


>gi|297682068|ref|XP_002818753.1| PREDICTED: PAX-interacting protein 1-like isoform 1 [Pongo abelii]
          Length = 1071

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 715 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 773

Query: 714 FLFLL 718
              +L
Sbjct: 774 LGDIL 778


>gi|297289727|ref|XP_002803580.1| PREDICTED: PAX-interacting protein 1-like isoform 2 [Macaca
           mulatta]
 gi|297289729|ref|XP_001110710.2| PREDICTED: PAX-interacting protein 1-like isoform 1 [Macaca
           mulatta]
          Length = 832

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 476 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 534

Query: 714 FLFLL 718
              +L
Sbjct: 535 LGDIL 539


>gi|296210154|ref|XP_002751854.1| PREDICTED: hypothetical protein LOC100398140 [Callithrix jacchus]
          Length = 1387

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654  FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
             TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 1015 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 1073

Query: 714  FLFLL 718
               +L
Sbjct: 1074 LGDIL 1078


>gi|194374543|dbj|BAG57167.1| unnamed protein product [Homo sapiens]
          Length = 1022

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 666 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 724

Query: 714 FLFLL 718
              +L
Sbjct: 725 LGDIL 729


>gi|193785202|dbj|BAG54355.1| unnamed protein product [Homo sapiens]
          Length = 300

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 28  VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 86

Query: 714 FLFLL 718
              +L
Sbjct: 87  LGDIL 91


>gi|119624929|gb|EAX04524.1| PAX interacting (with transcription-activation domain) protein 1,
           isoform CRA_a [Homo sapiens]
          Length = 822

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 466 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 524

Query: 714 FLFLL 718
              +L
Sbjct: 525 LGDIL 529


>gi|119624930|gb|EAX04525.1| PAX interacting (with transcription-activation domain) protein 1,
           isoform CRA_b [Homo sapiens]
          Length = 697

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 341 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 399

Query: 714 FLFLL 718
              +L
Sbjct: 400 LGDIL 404


>gi|114616912|ref|XP_519476.2| PREDICTED: hypothetical protein LOC463836 isoform 5 [Pan
           troglodytes]
          Length = 1067

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 711 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 769

Query: 714 FLFLL 718
              +L
Sbjct: 770 LGDIL 774


>gi|114616918|ref|XP_001144788.1| PREDICTED: PAX interacting protein 1 isoform 2 [Pan troglodytes]
          Length = 962

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 606 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 664

Query: 714 FLFLL 718
              +L
Sbjct: 665 LGDIL 669


>gi|114616920|ref|XP_001144651.1| PREDICTED: PAX interacting protein 1 isoform 1 [Pan troglodytes]
          Length = 1083

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 711 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 769

Query: 714 FLFLL 718
              +L
Sbjct: 770 LGDIL 774


>gi|114616914|ref|XP_001145022.1| PREDICTED: PAX interacting protein 1 isoform 4 [Pan troglodytes]
          Length = 1033

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 677 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 735

Query: 714 FLFLL 718
              +L
Sbjct: 736 LGDIL 740


>gi|93141033|ref|NP_031375.3| PAX-interacting protein 1 [Homo sapiens]
 gi|317373316|sp|Q6ZW49|PAXI1_HUMAN RecName: Full=PAX-interacting protein 1; AltName: Full=PAX
           transactivation activation domain-interacting protein
          Length = 1069

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 713 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 771

Query: 714 FLFLL 718
              +L
Sbjct: 772 LGDIL 776


>gi|34529189|dbj|BAC85657.1| unnamed protein product [Homo sapiens]
          Length = 1035

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 679 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 737

Query: 714 FLFLL 718
              +L
Sbjct: 738 LGDIL 742


>gi|34364631|emb|CAE45762.1| hypothetical protein [Homo sapiens]
          Length = 822

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 466 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 524

Query: 714 FLFLL 718
              +L
Sbjct: 525 LGDIL 529


>gi|30142001|gb|AAP21865.1| unknown [Homo sapiens]
          Length = 698

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 342 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 400

Query: 714 FLFLL 718
              +L
Sbjct: 401 LGDIL 405


>gi|2565046|gb|AAB91434.1| CAGF28 [Homo sapiens]
          Length = 744

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 388 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 446

Query: 714 FLFLL 718
              +L
Sbjct: 447 LGDIL 451


>gi|21707458|gb|AAH33781.1| PAXIP1 protein [Homo sapiens]
          Length = 757

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 401 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 459

Query: 714 FLFLL 718
              +L
Sbjct: 460 LGDIL 464


>gi|14249898|gb|AAH08328.1| PAXIP1 protein [Homo sapiens]
          Length = 391

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 35  VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 93

Query: 714 FLFLL 718
              +L
Sbjct: 94  LGDIL 98


>gi|31874663|emb|CAD98066.1| hypothetical protein [Homo sapiens]
          Length = 675

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 319 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQW 377

Query: 714 FLFLL 718
              +L
Sbjct: 378 LGDIL 382


>gi|315656605|ref|ZP_07909492.1| excinuclease ABC subunit C [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492560|gb|EFU82164.1| excinuclease ABC subunit C [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 693

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           +    D S      +  ++R  ++ R I       VG    ++L +++ S +   +    
Sbjct: 606 LQYLRDESHRFAISAHRQKRARAMTRSILDAA-PGVGPAKQKALLRHFGSVKRLREASAA 664

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
            IA           VP  G   A+ +V F  N  N
Sbjct: 665 EIA----------EVPGFGLKSAENLVAFLNNSGN 689


>gi|169403100|emb|CAP17701.1| cassette chromosome recombinase A5 [Staphylococcus
           pseudintermedius]
          Length = 449

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 12/83 (14%)

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R P +        CP C S +      KT   +  + C   +              SR 
Sbjct: 254 KRTPSSNQLKQKIKCPCCGSTLTNITIRKTNHSLRYYVCPKNMN------------ASRF 301

Query: 480 AFNIEGLGKQQLDFFFKSEDPAF 502
           A + +G+  + L+         F
Sbjct: 302 ACDFKGINAKNLEKQVLETCQNF 324


>gi|313214703|emb|CBY40991.1| unnamed protein product [Oikopleura dioica]
          Length = 796

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
               E  +N  +I ++E        +   +    S          T   Q+ ++  A++ 
Sbjct: 91  CFYFEGLENATDIESIEER-----ENTKVYWCASSRLFSGAGFC-TAKYQENEKKLARQA 144

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               G   SA + R    +I  D  G K  KA    +  +  +  +  L++
Sbjct: 145 AEAGGGKFSASMDRDVTHVIAPDWSGPKQAKAISARLPCITVDWIITCLEK 195


>gi|332164706|ref|NP_001193695.1| topoisomerase (DNA) II binding protein 1 [Bos taurus]
 gi|296490971|gb|DAA33069.1| mutagen-sensitive 101-like [Bos taurus]
          Length = 1521

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKDRREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|298346942|ref|YP_003719629.1| excision endonuclease subunit UvrC [Mobiluncus curtisii ATCC 43063]
 gi|298237003|gb|ADI68135.1| excision endonuclease subunit UvrC [Mobiluncus curtisii ATCC 43063]
          Length = 693

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           +    D S      +  ++R  ++ R I       VG    ++L +++ S +   +    
Sbjct: 606 LQYLRDESHRFAISAHRQKRARAMTRSILDAA-PGVGPAKQKALLRHFGSVKRLREASAA 664

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
            IA           VP  G   A+ +V F  N  N
Sbjct: 665 EIA----------EVPGFGLKSAENLVAFLNNSGN 689


>gi|261329109|emb|CBH12088.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 1791

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +  +  + LGA     ++++T I++ G     K   A+Q  + +++    L  L+ + 
Sbjct: 96  RQVTKLASSLGAKTQTRITKRTTILVAGRGLTRKRLVAEQQSIPVVS----LRWLESHG 150


>gi|307206267|gb|EFN84332.1| DNA topoisomerase 2-binding protein 1 [Harpegnathos saltator]
          Length = 1315

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
              +  +G L    + + Q++V  +G   +  L      ++      +K E A ++ + I
Sbjct: 115 GICICASG-LSPESKDQIQQWVQYMGGFFTKQLRNSVTHLVTDSVMSAKYEGAIEMKISI 173

Query: 709 MNEEQFLFLLQQYNTTLRIHDDD 731
           M  + ++  + + N    +  DD
Sbjct: 174 MT-KDWVKAIWEANLNEIVKADD 195


>gi|85114030|ref|XP_964622.1| hypothetical protein NCU07435 [Neurospora crassa OR74A]
 gi|28926411|gb|EAA35386.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 454

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           +++    +  TG L    R      V ++GA +   +   T   +  +  G + EKA +L
Sbjct: 166 TDLSGITIT-TGILPPALRESLARSVDRIGAKLVDTVRIDTTHFVTTEGRGVQWEKANEL 224

Query: 705 GVKIM 709
            + ++
Sbjct: 225 NIPVV 229


>gi|123401628|ref|XP_001301902.1| NLI interacting factor-like phosphatase family protein [Trichomonas
           vaginalis G3]
 gi|121883137|gb|EAX88972.1| NLI interacting factor-like phosphatase family protein [Trichomonas
           vaginalis G3]
          Length = 461

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 620 RNICAVEALLKEVSPSIGRHEKNV--------SSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +    +  +      +    E +V        +   E K   F+G L +           
Sbjct: 253 QMRSVLIDVHDMFYKNYDPEESHVIMTLHQRKAQVFEGKTFYFSG-LSEDDTMTFTRLAE 311

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL-GVKIM 709
           + GA+V    +  T  IIVG+     +++KA +  GV I+
Sbjct: 312 EFGALVVDSFTPYTTHIIVGEGGTDDQIQKAMEYRGVYII 351


>gi|26351417|dbj|BAC39345.1| unnamed protein product [Mus musculus]
          Length = 183

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 17/148 (11%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ----AIVEFYQNPRNICAVEALLKEVS 633
           + F + + +I    ++D+L +I       I        I + +         +   + V 
Sbjct: 21  ECFFKALESIKELQSEDYLQIITDEEALKIRENDKSLYICDRFSGTVFDHLKQLGCRIVG 80

Query: 634 PSIG----RHEKNVSSE--------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           P +     RH++ V           + +  +  T +L K +R +  +YV  +G  V   L
Sbjct: 81  PQVVTFCMRHQQCVPRAEHPVYNMIMSDVTVSCT-SLDKDKREEVHKYVQMMGGRVYRDL 139

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +     +I G+    K   A  L   I+
Sbjct: 140 NVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|74217147|dbj|BAC39241.2| unnamed protein product [Mus musculus]
          Length = 179

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 17/148 (11%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ----AIVEFYQNPRNICAVEALLKEVS 633
           + F + + +I    ++D+L +I       I        I + +         +   + V 
Sbjct: 21  ECFFKALESIKELQSEDYLQIITDEEALKIRENDKSLYICDRFSGTVFDHLKQLGCRIVG 80

Query: 634 PSIG----RHEKNVSSE--------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           P +     RH++ V           + +  +  T +L K +R +  +YV  +G  V   L
Sbjct: 81  PQVVTFCMRHQQCVPRAEHPVYNMIMSDVTVSCT-SLDKDKREEVHKYVQMMGGRVYRDL 139

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +     +I G+    K   A  L   I+
Sbjct: 140 NVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|37359872|dbj|BAC97914.1| mKIAA0259 protein [Mus musculus]
          Length = 1569

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 17/148 (11%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ----AIVEFYQNPRNICAVEALLKEVS 633
           + F + + +I    ++D+L +I       I        I + +         +   + V 
Sbjct: 75  ECFFKALESIKELQSEDYLQIITDEEALKIRENDKSLYICDRFSGTVFDHLKQLGCRIVG 134

Query: 634 PSIG----RHEKNVSSE--------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           P +     RH++ V           + +  +  T +L K +R +  +YV  +G  V   L
Sbjct: 135 PQVVTFCMRHQQCVPRAEHPVYNMIMSDVTVSCT-SLDKDKREEVHKYVQMMGGRVYRDL 193

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +     +I G+    K   A  L   I+
Sbjct: 194 NVSVTHLIAGEVGSKKYLVAANLKKPIL 221


>gi|31559817|ref|NP_795953.2| DNA topoisomerase 2-binding protein 1 [Mus musculus]
 gi|62901438|sp|Q6ZQF0|TOPB1_MOUSE RecName: Full=DNA topoisomerase 2-binding protein 1; AltName:
           Full=DNA topoisomerase II-beta-binding protein 1;
           Short=TopBP1; AltName: Full=DNA topoisomerase II-binding
           protein 1
 gi|29437358|gb|AAH49797.1| Topoisomerase (DNA) II binding protein 1 [Mus musculus]
 gi|148689121|gb|EDL21068.1| topoisomerase (DNA) II beta binding protein [Mus musculus]
          Length = 1515

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 17/148 (11%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ----AIVEFYQNPRNICAVEALLKEVS 633
           + F + + +I    ++D+L +I       I        I + +         +   + V 
Sbjct: 21  ECFFKALESIKELQSEDYLQIITDEEALKIRENDKSLYICDRFSGTVFDHLKQLGCRIVG 80

Query: 634 PSIG----RHEKNVSSE--------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           P +     RH++ V           + +  +  T +L K +R +  +YV  +G  V   L
Sbjct: 81  PQVVTFCMRHQQCVPRAEHPVYNMIMSDVTVSCT-SLDKDKREEVHKYVQMMGGRVYRDL 139

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +     +I G+    K   A  L   I+
Sbjct: 140 NVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|195997637|ref|XP_002108687.1| hypothetical protein TRIADDRAFT_51872 [Trichoplax adhaerens]
 gi|190589463|gb|EDV29485.1| hypothetical protein TRIADDRAFT_51872 [Trichoplax adhaerens]
          Length = 990

 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G  IA   + +  +      +      +   I    K +    +   +  TG     +R 
Sbjct: 661 GKKIA--TICWLNDVLRKEEIFTPRDCM--QIPVPSKYIIDACKEMVIAVTG-YTGKERD 715

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           K +  +  +GA  +  LSRK   +I     G K  KA++  +
Sbjct: 716 KVKMIINAIGANYTPHLSRKNTHLICKSPSGEKFFKAKEWRI 757


>gi|326920111|ref|XP_003206319.1| PREDICTED: bifunctional methylenetetrahydrofolate
           dehydrogenase/cyclohydrolase, mitochondrial-like,
           partial [Meleagris gallopavo]
          Length = 308

 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 17/86 (19%)

Query: 652 LVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS------KLEKAQQL 704
           +V +G  L +  R +A+  V Q   V +        +++VG+NP S      K + A  +
Sbjct: 4   VVISGRKLARQIRQEARHEVEQW--VAAGNKRPHLSVVLVGENPASHSYVLNKTKAAADV 61

Query: 705 GV---KI-----MNEEQFLFLLQQYN 722
           G+    I     + EE+ L L+ + N
Sbjct: 62  GISSETILKPASITEEELLDLISKLN 87


>gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
 gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
          Length = 936

 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 7/142 (4%)

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTKIENILGFGDVSVT 536
           +A +I G   ++ +            +  A + +  +   +         ILG  +V   
Sbjct: 110 EADDIIGTLAKKAEQKGYKVYCMTPDKDFAQLVSDNIFIYKPARMGNDMEILGVKEVLAK 169

Query: 537 NLYDSINKRRNISLERFIFSL----GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
              + + +  +I L  +  ++    GI  VG + A+SL K Y S +N     + +     
Sbjct: 170 WEVERVEQVIDI-LGLWGDAVDNIPGIPGVGEKTAKSLIKQYGSMENIIAHSHELKGKLR 228

Query: 593 DDWLSLIRVPLVGDIIAQAIVE 614
           ++  +  +  L+   +A  I++
Sbjct: 229 ENIETHAQQGLISKKLATIILD 250


>gi|326477486|gb|EGE01496.1| RNA Polymerase II CTD phosphatase Fcp1 [Trichophyton equinum CBS
           127.97]
          Length = 866

 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 652 LVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
           LVF+G L             +    GA +++ ++ +T  ++ G N  +K+ +A +   +K
Sbjct: 546 LVFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYTKIK 605

Query: 708 IMNEEQFLFL------LQQYNTTLRIHDDD 731
           I+  +  L        L +    + +H DD
Sbjct: 606 IVTVQWLLDCMIQWKHLDEEPYLVPVHPDD 635


>gi|326475449|gb|EGD99458.1| RNA Polymerase II CTD phosphatase [Trichophyton tonsurans CBS
           112818]
          Length = 866

 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 652 LVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
           LVF+G L             +    GA +++ ++ +T  ++ G N  +K+ +A +   +K
Sbjct: 546 LVFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYTKIK 605

Query: 708 IMNEEQFLFL------LQQYNTTLRIHDDD 731
           I+  +  L        L +    + +H DD
Sbjct: 606 IVTVQWLLDCMIQWKHLDEEPYLVPVHPDD 635


>gi|220917777|ref|YP_002493081.1| excinuclease ABC, C subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254764919|sp|B8JDG6|UVRC_ANAD2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|219955631|gb|ACL66015.1| excinuclease ABC, C subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 707

 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 12/73 (16%)

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RR  + +  +    I  +G    R+L +++ + +   +     IA          +V   
Sbjct: 592 RRERNFQSVLEE--IPGIGEGRKRALLRHFGALRRVREATPEEIA----------QVEGF 639

Query: 605 GDIIAQAIVEFYQ 617
           G   A A+  F+ 
Sbjct: 640 GPRQAAAVHAFFH 652


>gi|149918455|ref|ZP_01906945.1| excinuclease ABC, C subunit [Plesiocystis pacifica SIR-1]
 gi|149820755|gb|EDM80165.1| excinuclease ABC, C subunit [Plesiocystis pacifica SIR-1]
          Length = 715

 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 12/76 (15%)

Query: 541 SINKRRNISLERFIFSL--GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +I   R    +R + S   GI+ VG    ++L +++ +          + A    D  +L
Sbjct: 645 AITHHRKRRGKRALTSTLDGIKGVGPATKKALLRHFGT----------VKAIRAADVDAL 694

Query: 599 IRVPLVGDIIAQAIVE 614
             V  VG  +A+ I  
Sbjct: 695 AEVKGVGPKLAEQIHA 710


>gi|86157705|ref|YP_464490.1| excinuclease ABC subunit C [Anaeromyxobacter dehalogenans 2CP-C]
 gi|119367624|sp|Q2IQH0|UVRC_ANADE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|85774216|gb|ABC81053.1| Excinuclease ABC subunit C [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 707

 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 12/73 (16%)

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RR  + +  +    I  +G    R+L +++ + +   +     IA          +V   
Sbjct: 592 RRERNFQSVLEE--IPGIGEGRKRALLRHFGALRRVREATPEEIA----------QVEGF 639

Query: 605 GDIIAQAIVEFYQ 617
           G   A A+  F+ 
Sbjct: 640 GPRQAAAVHAFFH 652


>gi|73960821|ref|XP_863797.1| PREDICTED: similar to Poly [ADP-ribose] polymerase-1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase-1)
           (Poly[ADP-ribose] synthetase-1) isoform 3 [Canis
           familiaris]
          Length = 981

 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 38/78 (48%), Gaps = 13/78 (16%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIIIVGDNPGSKL 698
            + N K++  G L +  + + +  + +LG  ++         +S K ++    +    K+
Sbjct: 356 PLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEV----EKMNKKM 410

Query: 699 EKAQQLGVKIMNEEQFLF 716
           E+ ++  +++++E+ FL 
Sbjct: 411 EEVREASIRVVSED-FLR 427


>gi|88602972|ref|YP_503150.1| Hef nuclease [Methanospirillum hungatei JF-1]
 gi|88188434|gb|ABD41431.1| helicase-like protein [Methanospirillum hungatei JF-1]
          Length = 750

 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 84/252 (33%), Gaps = 42/252 (16%)

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKR-------AGEVIPKVVDIIV-NERHPDAQ 426
           + D ++   A+ + +  G  I + DR LV +       AG VI ++  ++  + +  D  
Sbjct: 522 DLDDLQKAKAAQEEVFSGPKIIIDDRELVSKVSEHLSSAGAVI-RIERLLQGDYKIGDRI 580

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF--NIE 484
                +      S + RDL  +  ++     C          +E    +  RD     I 
Sbjct: 581 LVERKTSRDFVDSLIDRDLLDQLREMARV--CPK----PVLIIEGGDIYSQRDIHPNAIR 634

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV--TNLYDSI 542
           G                F  R   D   L         + E   G+ +        Y+S+
Sbjct: 635 G---ALAAISVTMGIVIFQTRDAGDTADL----LLVLARREEENGYKERGSGQKEAYESL 687

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +   +  F        +G + AR+L   + S          + A  + +   L++VP
Sbjct: 688 ATAQEAIMSAF------PDLGPKYARALLTAFGS----------LKAIIDAEKEELLQVP 731

Query: 603 LVGDIIAQAIVE 614
            +G   A+ I E
Sbjct: 732 GIGAKKAEMIYE 743


>gi|73960819|ref|XP_863776.1| PREDICTED: similar to Poly [ADP-ribose] polymerase-1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase-1)
           (Poly[ADP-ribose] synthetase-1) isoform 2 [Canis
           familiaris]
          Length = 976

 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 38/78 (48%), Gaps = 13/78 (16%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIIIVGDNPGSKL 698
            + N K++  G L +  + + +  + +LG  ++         +S K ++    +    K+
Sbjct: 345 PLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEV----EKMNKKM 399

Query: 699 EKAQQLGVKIMNEEQFLF 716
           E+ ++  +++++E+ FL 
Sbjct: 400 EEVREASIRVVSED-FLR 416


>gi|73960817|ref|XP_547506.2| PREDICTED: similar to Poly [ADP-ribose] polymerase-1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase-1)
           (Poly[ADP-ribose] synthetase-1) isoform 1 [Canis
           familiaris]
          Length = 972

 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 38/78 (48%), Gaps = 13/78 (16%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIIIVGDNPGSKL 698
            + N K++  G L +  + + +  + +LG  ++         +S K ++    +    K+
Sbjct: 347 PLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEV----EKMNKKM 401

Query: 699 EKAQQLGVKIMNEEQFLF 716
           E+ ++  +++++E+ FL 
Sbjct: 402 EEVREASIRVVSED-FLR 418


>gi|73960823|ref|XP_863821.1| PREDICTED: similar to Poly [ADP-ribose] polymerase-1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase-1)
           (Poly[ADP-ribose] synthetase-1) isoform 4 [Canis
           familiaris]
          Length = 973

 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 38/78 (48%), Gaps = 13/78 (16%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIIIVGDNPGSKL 698
            + N K++  G L +  + + +  + +LG  ++         +S K ++    +    K+
Sbjct: 348 PLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEV----EKMNKKM 402

Query: 699 EKAQQLGVKIMNEEQFLF 716
           E+ ++  +++++E+ FL 
Sbjct: 403 EEVREASIRVVSED-FLR 419


>gi|256381025|ref|YP_003104685.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
 gi|255925328|gb|ACU40839.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 382

 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVV-SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKI 708
           +VFTG +    R          G  V S  ++R T +++  D  +  +K  +A+  GV I
Sbjct: 298 VVFTGQMDD-ARDVWVGRALGSGLRVNSGYVTRATALLVAADPFSLSTKARRARAYGVPI 356

Query: 709 MNE 711
           ++E
Sbjct: 357 VSE 359


>gi|68062632|ref|XP_673324.1| replication factor C subunit 1 [Plasmodium berghei strain ANKA]
 gi|56491097|emb|CAH96916.1| replication factor C subunit 1, putative [Plasmodium berghei]
          Length = 512

 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 14/50 (28%)

Query: 675 AVVSAILSRKTDIIIVGD--------NPGSKLEKAQQLG------VKIMN 710
             V + +S KT  +I G+        N G K +KA +L       +KI+N
Sbjct: 1   GSVMSAVSSKTHYLIHGEYLEDGRLYNEGKKYQKAYELSKQSKSIIKILN 50


>gi|38347180|emb|CAE02404.2| OSJNBa0024J22.8 [Oryza sativa Japonica Group]
 gi|38347206|emb|CAE05123.2| OSJNBa0023J03.18 [Oryza sativa Japonica Group]
          Length = 593

 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 53/311 (17%), Positives = 105/311 (33%), Gaps = 35/311 (11%)

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDID---IQIGRTGILTP-VARLEPVNIGGALITN 370
           L  R + P +    KF+ +   +    +     Q G    +     RL P+++ G   T 
Sbjct: 278 LPNRYKVPNFS---KFSGQDNISTYEHVSRFLAQCGEASAVDALRVRLFPLSLSGTTFTW 334

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIR-------VGDRVLVKRAGEVIPK-VVDIIVNERH 422
            +    + ++G ++S +       +R         D   V  A  V  K VV     +  
Sbjct: 335 FSSLPYNSVQGFNSSDQGEILITGVRKLVSSRTEEDDFEVAAAEWVRSKKVVQCQWVKNS 394

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + F        C +  +R  +     +     C+    CS+Q   R      +    
Sbjct: 395 GKEERF--------CWNEGMRLPS-----IGDCLGCSNNAGCSSQSYSRSNRLSQKRVPV 441

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
            + LG    D +   ++       P+ IFT  + Q+    ++ N   F +V     +  +
Sbjct: 442 HQRLGPVNQDRYQDDDEDRKIQWCPSGIFT--KNQKRRVQRMRNRERFQEVEQEINHR-L 498

Query: 543 NKRRNISLERFIFSLGIR-HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
            K +     R    +       A+ A+ LAK   S  + +  +  ++    +   +   V
Sbjct: 499 KKTKPRQEWRVKSKIATADETEADKAKRLAK-GKSVASASVNMVFVLPAEYEAKQA--DV 555

Query: 602 PLVGDIIAQAI 612
             V +  A+ I
Sbjct: 556 DDVEEASARLI 566


>gi|312222002|emb|CBY01942.1| similar to RNA polymerase II subunit A C-terminal domain
           phosphatase [Leptosphaeria maculans]
          Length = 887

 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 627 ALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSAILS 682
             + +V P +      + SE ++   +VF+G +     +Q      ++   GA VS  ++
Sbjct: 584 RAMNDVVPDVAEIMPRIKSEVLDGAVVVFSGIIPLGVDVQSSDFALWIMSFGAEVSTTVN 643

Query: 683 RKTDIIIVG-DNPGSKLEKAQQL-GVKIMNEEQFLF 716
           R+T  +I   D   +K++ A +   +KI+N E    
Sbjct: 644 RRTTHVIANPDRKTTKVKSAARYPHIKIVNPEWMFQ 679


>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
 gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
          Length = 931

 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 52/142 (36%), Gaps = 7/142 (4%)

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ--RRQQTSTTKIENILGFGDVSVT 536
           +A +I G   +Q +    +       +    + +      +     K   I G  +V   
Sbjct: 110 EADDIIGTLAKQAEKQGYTVYMVTPDKDYGQLVSPNIFMYKPARGGKDTEIWGVEEVKEN 169

Query: 537 NLYDSINKRRNISLERFIFSL----GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
              ++  +  ++ L     ++    G+  VG + A+ L K + S +N     + +     
Sbjct: 170 FQVENPEQVIDL-LGMMGDAVDNIPGLPGVGEKTAQKLLKEFGSLENLLDNTDKLKGKLR 228

Query: 593 DDWLSLIRVPLVGDIIAQAIVE 614
           ++  +     ++   +A+ I++
Sbjct: 229 ENIEANKDKGILSKTLARIILD 250


>gi|241952010|ref|XP_002418727.1| DNA replication regulator dpb11, putative; S-M checkpoint control
           protein, putative [Candida dubliniensis CD36]
 gi|223642066|emb|CAX44032.1| DNA replication regulator dpb11, putative [Candida dubliniensis
           CD36]
          Length = 729

 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                    TG L+   R +    +  LG +  + L    + +IVGD    K 
Sbjct: 5   PFTGLLFCCTG-LESTTRREVVGKIETLGGIHYSDLMTDVNYLIVGDRDTEKY 56


>gi|195394225|ref|XP_002055746.1| GJ18611 [Drosophila virilis]
 gi|194150256|gb|EDW65947.1| GJ18611 [Drosophila virilis]
          Length = 1416

 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-LSRKTDIIIVGDNPGSKLEKAQQ 703
             +    +V +     ++R         LGAV++   + ++  ++I     GSK E A +
Sbjct: 716 EPLRGMTIVVS-IYAGLERDYINALAELLGAVLNKAFVKKERPLLICSSAEGSKYEGALK 774

Query: 704 LGVKIMNEEQFLF 716
            G  +++ +  L 
Sbjct: 775 WGYPVVHADWLLQ 787


>gi|302657133|ref|XP_003020296.1| hypothetical protein TRV_05607 [Trichophyton verrucosum HKI 0517]
 gi|291184115|gb|EFE39678.1| hypothetical protein TRV_05607 [Trichophyton verrucosum HKI 0517]
          Length = 865

 Score = 39.2 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 652 LVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
           LVF+G L             +    GA +++ ++ +T  ++ G N  +K+ +A +   +K
Sbjct: 545 LVFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYPKIK 604

Query: 708 IMNEEQFLFL------LQQYNTTLRIHDDD 731
           I+  +  L        L +    + +H DD
Sbjct: 605 IVTVQWLLDCMIQWKHLDEEPYLVPVHPDD 634


>gi|198412483|ref|XP_002122941.1| PREDICTED: Zn-finger (NAD(+) ADP-ribosyltransferase)-3, partial
           [Ciona intestinalis]
          Length = 567

 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           +V  G L K  R + ++ V  LG  V+  L++
Sbjct: 383 VVIIGKLSKP-RDELKQLVENLGGSVTTSLNK 413


>gi|93003306|tpd|FAA00236.1| TPA: zinc finger protein [Ciona intestinalis]
          Length = 565

 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           +V  G L K  R + ++ V  LG  V+  L++
Sbjct: 381 VVIIGKLSKP-RDELKQLVENLGGSVTTSLNK 411


>gi|320584064|gb|EFW98276.1| DNA polymerase II complex component [Pichia angusta DL-1]
          Length = 439

 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 24/49 (48%)

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            K +  V   G  V   +S  +D+++     G +  KA++ G+ +++ +
Sbjct: 93  SKIRHMVESNGGSVVESISTVSDVLVTTVPEGLRYSKAREWGIPVVSPD 141


>gi|154303916|ref|XP_001552364.1| hypothetical protein BC1G_08842 [Botryotinia fuckeliana B05.10]
 gi|150854426|gb|EDN29618.1| hypothetical protein BC1G_08842 [Botryotinia fuckeliana B05.10]
          Length = 815

 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 39/115 (33%), Gaps = 9/115 (7%)

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           P V  +    I        N   ++              ++      + ++  TG     
Sbjct: 79  PDVRPMTTDWIATVRNLWVNDHDID--------MDLLERQHTLPTFTSLRISMTGCDDPA 130

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +R      +   G      L+++   +I     G+K + A+  G++I++  ++L 
Sbjct: 131 ERQDIAGKIKANGGEYDGNLTKQITHLISFRTEGNKYKAAKSWGLRIVS-AEWLS 184


>gi|50732850|ref|XP_418794.1| PREDICTED: similar to KIAA0259 [Gallus gallus]
          Length = 1519

 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TD 686
             + +  +    E           +  TG L    R + Q    + G   S  L      
Sbjct: 179 QQRMMRYTDVNMEDYACPVFLGCTICVTG-LSSSDRKEVQRLTAEHGGQYSGQLKMNECT 237

Query: 687 IIIVGDNPGSKLEKAQQLGV 706
            +IV +  G K E A++  V
Sbjct: 238 HLIVQEPKGQKYECAKKWNV 257


>gi|327296037|ref|XP_003232713.1| RNA Polymerase II CTD phosphatase [Trichophyton rubrum CBS 118892]
 gi|326465024|gb|EGD90477.1| RNA Polymerase II CTD phosphatase [Trichophyton rubrum CBS 118892]
          Length = 836

 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 652 LVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
           LVF+G L             +    GA +++ ++ +T  ++ G N  +K+ +A +   +K
Sbjct: 516 LVFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYPKIK 575

Query: 708 IMNEEQFLFL------LQQYNTTLRIHDDD 731
           I+  +  L        L +    + +H DD
Sbjct: 576 IVTVQWLLDCMIQWKHLDEEPYLVPVHPDD 605


>gi|222480951|ref|YP_002567188.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222453853|gb|ACM58118.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 836

 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 14/101 (13%)

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                 +  K E      +VSV     +  +              I  +G   AR+L ++
Sbjct: 743 TTELLATIAKREQETRDREVSVHGEKTAKTRAEQQEY----VVSSIADIGPVTARTLLEH 798

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + +       +  ++    DD L    V  VG + A+ I E
Sbjct: 799 FGT-------VEAVMTAPEDDLLE---VDGVGPVTAERIRE 829


>gi|260950037|ref|XP_002619315.1| hypothetical protein CLUG_00474 [Clavispora lusitaniae ATCC 42720]
 gi|238846887|gb|EEQ36351.1| hypothetical protein CLUG_00474 [Clavispora lusitaniae ATCC 42720]
          Length = 840

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
           +S   +      TG +Q  QRH+  + +  LG      L      ++VG     K 
Sbjct: 162 MSKPFQGLTFCCTG-IQSSQRHEVADKIVALGGTHYTDLMSSVTYLVVGSRNTEKY 216


>gi|296810642|ref|XP_002845659.1| RNA polymerase II subunit A C-terminal domain phosphatase
           [Arthroderma otae CBS 113480]
 gi|238843047|gb|EEQ32709.1| RNA polymerase II subunit A C-terminal domain phosphatase
           [Arthroderma otae CBS 113480]
          Length = 832

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 645 SEIENKKLVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           + +E+  LVF+G L             +    GA +++ ++ +T  ++ G N  +K+ +A
Sbjct: 502 AALESVVLVFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREA 561

Query: 702 QQL-GVKIMNEEQF------LFLLQQYNTTLRIHDDD 731
            +   VKI+  +           L +    + +H DD
Sbjct: 562 TRYPKVKIVTVQWLVDCMTQWKRLDEEPYLVPVHPDD 598


>gi|47937513|gb|AAH72082.1| MGC78982 protein [Xenopus laevis]
          Length = 335

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 17/94 (18%)

Query: 645 SEIENKKLVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS------K 697
           +   N+ +V +G  L +  R +A+  V Q   V +        +I+VGD+P S      K
Sbjct: 24  TPCRNEAVVISGRKLARQIRQEARHDVEQW--VAAGNKRPHLSVILVGDDPASHSYVLNK 81

Query: 698 LEKAQQLGV--------KIMNEEQFLFLLQQYNT 723
            + A  +G+          + EE+ L L+ + N 
Sbjct: 82  TKAAADVGISSETILKPTSITEEELLDLINKLND 115


>gi|147903948|ref|NP_001085223.1| methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2,
           methenyltetrahydrofolate cyclohydrolase [Xenopus laevis]
 gi|83318434|gb|AAI08465.1| MGC78982 protein [Xenopus laevis]
          Length = 335

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 17/94 (18%)

Query: 645 SEIENKKLVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS------K 697
           +   N+ +V +G  L +  R +A+  V Q   V +        +I+VGD+P S      K
Sbjct: 24  TPCRNEAVVISGRKLARQIRQEARHDVEQW--VAAGNKRPHLSVILVGDDPASHSYVLNK 81

Query: 698 LEKAQQLGV--------KIMNEEQFLFLLQQYNT 723
            + A  +G+          + EE+ L L+ + N 
Sbjct: 82  TKAAADVGISSETILKPTSITEEELLDLINKLND 115


>gi|237752796|ref|ZP_04583276.1| translation initiation factor if-2 [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376285|gb|EEO26376.1| translation initiation factor if-2 [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 887

 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 654 FTGTLQKIQRHKAQEYVTQLG--AVVSAILS---RKTDIIIVGDN---PGSKLEKAQQLG 705
             G+L K+Q  + +  +   G   +  + ++     T+ +I+G N    GS   KA++LG
Sbjct: 701 IRGSLDKLQNEEVKVNIIHKGVGGITESDVTLAGASTNCVILGFNVRPTGSVKNKAKELG 760

Query: 706 VKIMNEEQFLFLLQQYNT 723
           ++I        LL     
Sbjct: 761 IEIKTYSIIYSLLDDIKA 778


>gi|306818853|ref|ZP_07452575.1| excision endonuclease subunit UvrC [Mobiluncus mulieris ATCC 35239]
 gi|304648539|gb|EFM45842.1| excision endonuclease subunit UvrC [Mobiluncus mulieris ATCC 35239]
          Length = 702

 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           +    D S      +  K+R  ++ R +   GI  +G    ++L K++ S +   +    
Sbjct: 615 LQYLRDESHRFAITAHRKKRGQAMTRSVLD-GIPGLGPAKQKALLKHFGSLRQIRRASAE 673

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            I+          +VP  G I+A  +V++ Q  
Sbjct: 674 DIS----------KVPGFGRILATQVVKYLQEN 696


>gi|318060514|ref|ZP_07979237.1| fatty acid oxidative multifunctional enzyme [Streptomyces sp.
           SA3_actG]
 gi|318080330|ref|ZP_07987662.1| fatty acid oxidative multifunctional enzyme [Streptomyces sp.
           SA3_actF]
          Length = 725

 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 12/128 (9%)

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV-----GDIIAQAIVEFYQN 618
              AR +  ++ S  +    +  I      D      V LV       I+      F+ +
Sbjct: 448 ERQARFIGLHFFSPVDRMPLVEIIKGARTGDEALAHAVDLVRQINKTPIVVADARGFFTS 507

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLV--FTGTLQKIQRHKAQEYVT 671
                 ++  +  V+  +       ++           LV   T TL +  R +++  V 
Sbjct: 508 RVIGQFIQEGVAMVAEGVEPASVEQAAAQAGYPAKVLSLVDELTLTLPRKIRDESRAAVE 567

Query: 672 QLGAVVSA 679
             G   + 
Sbjct: 568 AAGGTWAG 575


>gi|197122985|ref|YP_002134936.1| excinuclease ABC subunit C [Anaeromyxobacter sp. K]
 gi|229557970|sp|B4UGB5|UVRC_ANASK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|196172834|gb|ACG73807.1| excinuclease ABC, C subunit [Anaeromyxobacter sp. K]
          Length = 707

 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 12/73 (16%)

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RR  + +  +    I  +G    R+L +++ + +   +     +A          +V   
Sbjct: 592 RRERNFQSVLEE--IPGIGEGRKRALLRHFGALRRVREATPEELA----------QVEGF 639

Query: 605 GDIIAQAIVEFYQ 617
           G   A A+  F+ 
Sbjct: 640 GPRQAAAVHAFFH 652


>gi|17542400|ref|NP_501749.1| PIS (Pax-2, IA-1/6, Smad-2 interacting protein) homolog family
           member (pis-1) [Caenorhabditis elegans]
 gi|3879830|emb|CAB03354.1| C. elegans protein T13F2.3a, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1074

 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQRHKAQEYVTQLGA 675
              I  +E    E+   I       +        K    +G     +R         +GA
Sbjct: 594 QWIIDVMERERVELPWRIAHLPPPFNENFRPYLGKLFSLSG-FDSSERAAISFMAEMMGA 652

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            ++  L+R+ D++I    P  K+ +AQ+  V ++N
Sbjct: 653 KITPFLARQNDLLIA-KQPADKVTRAQEWKVPVVN 686


>gi|17542402|ref|NP_501748.1| PIS (Pax-2, IA-1/6, Smad-2 interacting protein) homolog family
           member (pis-1) [Caenorhabditis elegans]
 gi|5824613|emb|CAB54313.1| C. elegans protein T13F2.3b, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1076

 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQRHKAQEYVTQLGA 675
              I  +E    E+   I       +        K    +G     +R         +GA
Sbjct: 596 QWIIDVMERERVELPWRIAHLPPPFNENFRPYLGKLFSLSG-FDSSERAAISFMAEMMGA 654

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            ++  L+R+ D++I    P  K+ +AQ+  V ++N
Sbjct: 655 KITPFLARQNDLLIA-KQPADKVTRAQEWKVPVVN 688


>gi|21914376|gb|AAM81360.1|AF522873_3 RNA polymerase II C-terminal domain phosphatase component
           [Leptosphaeria maculans]
          Length = 804

 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 627 ALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSAILS 682
             + +V P +      + SE ++   +VF+G +     +Q      ++   GA VS  ++
Sbjct: 501 RAMNDVVPDVAEIMPRIKSEVLDGAVVVFSGIIPLGVDVQSSDFALWIMSFGAEVSTTVN 560

Query: 683 RKTDIIIVG-DNPGSKLEKAQQL-GVKIMNEEQFLF 716
           R+T  +I   D   +K++ A +   +KI+N E    
Sbjct: 561 RRTTHVIANPDRKTTKVKSAARYPHIKIVNPEWMFQ 596


>gi|254391652|ref|ZP_05006850.1| hypothetical protein SSCG_04177 [Streptomyces clavuligerus ATCC
           27064]
 gi|294812978|ref|ZP_06771621.1| Hypothetical protein SCLAV_2147 [Streptomyces clavuligerus ATCC
           27064]
 gi|326441474|ref|ZP_08216208.1| hypothetical protein SclaA2_10433 [Streptomyces clavuligerus ATCC
           27064]
 gi|197705337|gb|EDY51149.1| hypothetical protein SSCG_04177 [Streptomyces clavuligerus ATCC
           27064]
 gi|294325577|gb|EFG07220.1| Hypothetical protein SCLAV_2147 [Streptomyces clavuligerus ATCC
           27064]
          Length = 247

 Score = 38.8 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 633 SPSIGRHEKNVSSEIEN----KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
            P   R  +  + +       + ++  G +   +   A+E V  LG  V       T ++
Sbjct: 81  EPEADRACEADADDGAGPEPVRSVMIAGEVPGYEWDTAREAVRNLGYEVVGRADDSTVLL 140

Query: 689 IVGDNP---GSKLEKAQQLGVKIMN 710
           I+G+     G+KL  A + G+  M+
Sbjct: 141 ILGEGGERNGTKLRDAAERGIPCMD 165


>gi|330792643|ref|XP_003284397.1| hypothetical protein DICPUDRAFT_75357 [Dictyostelium purpureum]
 gi|325085644|gb|EGC39047.1| hypothetical protein DICPUDRAFT_75357 [Dictyostelium purpureum]
          Length = 247

 Score = 38.8 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---NPG 695
            ++  S+  EN   VF  T+   ++ +    + + G       +  T +I   +      
Sbjct: 24  EDQINSNIFENLAFVFDKTINLKRKIELINIIKKNGGKCCYSCTNATHLISTKEGYLEKT 83

Query: 696 SKLEKAQQLGVKIM 709
            K+E+A  LG+ I+
Sbjct: 84  QKVEQALSLGIPIL 97


>gi|154291583|ref|XP_001546373.1| hypothetical protein BC1G_15060 [Botryotinia fuckeliana B05.10]
 gi|150846697|gb|EDN21890.1| hypothetical protein BC1G_15060 [Botryotinia fuckeliana B05.10]
          Length = 398

 Score = 38.8 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 645 SEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +++    +  T G L    R    + V ++GA ++  +   T   +  +  G   EKA +
Sbjct: 166 TDLSGITV--TPGILPASLRDSLVKAVERIGAKMADSVRIDTTHFVTTEGRGIAWEKAVE 223

Query: 704 LGVKIM 709
           + + ++
Sbjct: 224 MNIPVV 229


>gi|281204241|gb|EFA78437.1| hypothetical protein PPL_09089 [Polysphondylium pallidum PN500]
          Length = 1252

 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 639  HEKNVSSEIENKKLVFTGTLQKIQRHKAQ-------EYVTQLGAVVSAILSRKTDIIIVG 691
             ++   S + +  +VF+G   K     A+       +     GA V   ++  T  +I  
Sbjct: 1141 MKEIRQSVLMDCNIVFSGIFPKQI-DSAKLVTTRIVQLTESFGAKVQMDITDNTTHLIYI 1199

Query: 692  DNPGSKLEKAQQLGVKIM 709
                SK+ +A + G+K++
Sbjct: 1200 KEGTSKVLQAMKCGIKVV 1217


>gi|18375967|emb|CAD21266.1| related to NAD+ ADP-ribosyltransferase [Neurospora crassa]
          Length = 661

 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-LSRKTDIIIVGDNP----GSKLEK 700
            +E+ ++VF+GT     + + ++    LGA  +   + +    +I  D       +K+++
Sbjct: 17  PLEDCRIVFSGTFVGG-QDQHKKTAESLGANTTGTTIVQSVTHVIYSDKSTDKISAKVKQ 75

Query: 701 AQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           A  + + +++ +    LL+   T  R  + D
Sbjct: 76  AHGMSIPVVSIDW---LLKTKETNTRHPEKD 103


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI----V 613
           GI  VG + A+ L   Y S +   + + ++     ++ ++     L+  ++A  I    V
Sbjct: 218 GIPGVGEKTAKKLIADYGSMEGVFENVEDLKGKMKENVINFKEQGLMSKLLATIILDAPV 277

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
           EF         V+     +        +N++  +  +++V T
Sbjct: 278 EFSAEELKTEEVDRD-AILEIFTDLEFRNLAKRVIGEEIVVT 318


>gi|325184072|emb|CCA18531.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 856

 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R    E +  +GA  S  LSR+   +I  +  G K +KA++  + ++N +  +  + Q
Sbjct: 763 RVVILELLKLVGAKTSRKLSRRNTHLICLNPFGMKYDKAKEWNIPVVNAQWIMQSISQ 820


>gi|281202484|gb|EFA76686.1| TPR repeat-containing protein [Polysphondylium pallidum PN500]
          Length = 1624

 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV-GDNPGS-K--LEKAQ 702
            + K       +   Q+   +EY+ + GA ++   S+  D +I  G++  + K  L  A 
Sbjct: 5   FKLKTFYLN-DINSDQKSTFKEYLEKHGATIAKRFSKNVDYVIASGESISANKYPLTIAT 63

Query: 703 QLGVKIMN 710
              + I+N
Sbjct: 64  ANNIPIIN 71


>gi|171686704|ref|XP_001908293.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943313|emb|CAP68966.1| unnamed protein product [Podospora anserina S mat+]
          Length = 731

 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +  L I  +     +  A   +S +N   E   ++A   DD      V  +G+I+ + I 
Sbjct: 582 LSGLDIDSLLGGQPKRAA---ISSENAIPEFKQMLAAAEDDETIEKAVKQMGEIVRKLIK 638

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQRHKAQEYVT 671
           + + +     A E L       +G     + +++    KK + +G L   +R    +++ 
Sbjct: 639 DSFADVFYSRAAENLGVMREELLGFEMPMLYNKLLRALKKSLLSGELDGDRREMWYKHIV 698

Query: 672 QLG 674
             G
Sbjct: 699 GGG 701


>gi|237681143|ref|NP_001153714.1| poly-(ADP-ribose) polymerase [Tribolium castaneum]
          Length = 991

 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
              +     K  +  + N + V  G    + + + +  + +LG  V   +S     +   
Sbjct: 367 GEENAEPKVKREAPALYNMEFVILGQ-PDMGKEELKRRIVKLGGKVVTKISGTVMAVFAS 425

Query: 692 ----DNPGSKLEKAQQLGVKIMNEE 712
               +  G++++  Q+  + +++E+
Sbjct: 426 KADVEKMGARMKVVQEEKIHVVSED 450


>gi|296488180|gb|DAA30293.1| PAX-interacting protein 1 [Bos taurus]
          Length = 897

 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 628 VTGFVDN-DRDDLKLMAYLAGAKYTGYLCRSNTVLICREPTGLKYEKAKEWRIPCVNAQW 686

Query: 714 FLFLL 718
              +L
Sbjct: 687 LGDIL 691


>gi|320009244|gb|ADW04094.1| alpha/beta hydrolase fold protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 298

 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 68/215 (31%), Gaps = 19/215 (8%)

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
            + R  H+ S        L ++             S +    ++T       + T IE +
Sbjct: 46  LMGRATHWAST----ARWLSERHRPVGLDQRGHGRSDKPAGGLYTRDAYVADAETAIEQL 101

Query: 528 LGFGDVSVTNLYDSINK----RRNISLERFIFSLGIRH--VGAEIARSLAKYYLSYQNFA 581
                  V +   ++       +   L + +    +R   +GA   R  A ++ ++    
Sbjct: 102 DLAPVTLVGHSMGALTAWQLAAKRPDLVKALIICDMRASAIGAASQREWADWFTTWPLPF 161

Query: 582 QEINNIIA--HNNDDWLS---LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
             + ++      +D W+      R     +++A++   +         + +    V  + 
Sbjct: 162 ATLADVRKWFGEDDPWVERPNPSRGEFFAEVMAESADGWRPVFSQEQMLASRATWVYDAH 221

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
                 V        LV  G   ++ R +AQE V 
Sbjct: 222 WEELAQVRCP----TLVLRGIDGELGRAEAQEMVR 252


>gi|118151388|ref|NP_001071385.1| PAX-interacting protein 1 [Bos taurus]
 gi|158512476|sp|A0JNA8|PAXI1_BOVIN RecName: Full=PAX-interacting protein 1; AltName: Full=PAX
           transactivation activation domain-interacting protein
 gi|117306239|gb|AAI26590.1| PAX interacting (with transcription-activation domain) protein 1
           [Bos taurus]
          Length = 984

 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 628 VTGFVDN-DRDDLKLMAYLAGAKYTGYLCRSNTVLICREPTGLKYEKAKEWRIPCVNAQW 686

Query: 714 FLFLL 718
              +L
Sbjct: 687 LGDIL 691


>gi|148232110|ref|NP_001086806.1| methylenetetrahydrofolate dehydrogenase 2 [Xenopus laevis]
 gi|50418343|gb|AAH77480.1| Mthfd2-prov protein [Xenopus laevis]
          Length = 335

 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 17/93 (18%)

Query: 645 SEIENKKLVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS------K 697
           +   N+ ++ +G  L +  R +A+  V Q   V +        +++VGDNP S      K
Sbjct: 24  TPCRNEAVIISGRKLARQIRQEARHEVEQW--VAAGNKRPHLSVVLVGDNPASHSYVLNK 81

Query: 698 LEKAQQLGV--------KIMNEEQFLFLLQQYN 722
            + A  +G+          + EE+ L L+ + N
Sbjct: 82  TKAAADVGISSETIIKPTSITEEELLDLINKLN 114


>gi|316974128|gb|EFV57654.1| putative BRCA1 domain protein [Trichinella spiralis]
          Length = 1033

 Score = 38.8 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +++  R K  + +  +G  VS  ++ K D +I  +    K   A    V I+   +++ +
Sbjct: 132 VERSVRDKLHDMILWMGGSVSRSMTSKCDFLIAAEVGSLKYRAACG-KVPILTP-EWVKM 189


>gi|256393553|ref|YP_003115117.1| PHP domain-containing protein [Catenulispora acidiphila DSM 44928]
 gi|256359779|gb|ACU73276.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
          Length = 579

 Score = 38.8 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 17/143 (11%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-- 616
           I  VG   A  +++Y  S     + + ++ A        + ++P VG   A  +      
Sbjct: 57  IPGVGDSTAEKISEYLAS--GRMEALESLRAKIPPGVREVTQIPGVGPKTAVLLYRKLGI 114

Query: 617 -QNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTG-TLQKIQRHKAQEYVTQL 673
                   A +A   +  P +G    +N+   IE      +G TL  I    A++ V +L
Sbjct: 115 KSVDELRKAADAGKLKGLPGLGEKTVENIRHGIEQLSQ-ASGRTLLSIALDLAEDLVAEL 173

Query: 674 GAVVSAILSRKTDIIIVGDNPGS 696
           GA V     +K D        GS
Sbjct: 174 GA-VPGC--KKCDY------AGS 187


>gi|327200589|pdb|3OLC|X Chain X, Crystal Structure Of The N-Terminal Region Of Topbp1
          Length = 298

 Score = 38.8 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV   G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKEKREEVHKYVQXXGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167



 Score = 38.1 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
                +  TG L  + R + Q+   + G      L       +IV +  G K E A++  
Sbjct: 200 FLGCIICVTG-LCGLDRKEVQQLTVKHGGQYXGQLKXNECTHLIVQEPKGQKYECAKRWN 258

Query: 706 VKIMNEEQFLFLLQQY 721
           V  +  + F   +++ 
Sbjct: 259 VHCVTTQWFFDSIEKG 274


>gi|305677642|pdb|2XNH|A Chain A, Structure And Function Of The Rad9-Binding Region Of The
           Dna Damage Checkpoint Adaptor Topbp1
          Length = 287

 Score = 38.8 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV   G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKEKREEVHKYVQXXGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167



 Score = 38.1 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
                +  TG L  + R + Q+   + G      L       +IV +  G K E A++  
Sbjct: 200 FLGCIICVTG-LCGLDRKEVQQLTVKHGGQYXGQLKXNECTHLIVQEPKGQKYECAKRWN 258

Query: 706 VKIMNEEQFLFLLQQY 721
           V  +  + F   +++ 
Sbjct: 259 VHCVTTQWFFDSIEKG 274


>gi|305677643|pdb|2XNK|A Chain A, Structure And Function Of The Rad9-Binding Region Of The
           Dna Damage Checkpoint Adaptor Topbp1
 gi|305677644|pdb|2XNK|B Chain B, Structure And Function Of The Rad9-Binding Region Of The
           Dna Damage Checkpoint Adaptor Topbp1
 gi|305677645|pdb|2XNK|C Chain C, Structure And Function Of The Rad9-Binding Region Of The
           Dna Damage Checkpoint Adaptor Topbp1
 gi|305677646|pdb|2XNK|D Chain D, Structure And Function Of The Rad9-Binding Region Of The
           Dna Damage Checkpoint Adaptor Topbp1
          Length = 292

 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV   G  V   L+     +I G+    K   A  L   I+
Sbjct: 117 SLEKEKREEVHKYVQXXGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 169



 Score = 38.1 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
                +  TG L  + R + Q+   + G      L       +IV +  G K E A++  
Sbjct: 202 FLGCIICVTG-LCGLDRKEVQQLTVKHGGQYXGQLKXNECTHLIVQEPKGQKYECAKRWN 260

Query: 706 VKIMNEEQFLFLLQQY 721
           V  +  + F   +++ 
Sbjct: 261 VHCVTTQWFFDSIEKG 276


>gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39]
 gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39]
          Length = 937

 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           GI  +G + A+SL + Y S +N     + +     ++     +  LV   +A  I++
Sbjct: 194 GIPGIGEKTAKSLIRQYGSMENIIANAHELKGKQRENVEMYAQQGLVSKKLATIILD 250


>gi|332818080|ref|XP_516761.3| PREDICTED: DNA topoisomerase 2-binding protein 1 [Pan troglodytes]
          Length = 1522

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|332232187|ref|XP_003265286.1| PREDICTED: DNA topoisomerase 2-binding protein 1 [Nomascus
           leucogenys]
          Length = 1527

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|297672001|ref|XP_002814104.1| PREDICTED: DNA topoisomerase 2-binding protein 1-like [Pongo
           abelii]
          Length = 1527

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|297286868|ref|XP_001112636.2| PREDICTED: DNA topoisomerase 2-binding protein 1 [Macaca mulatta]
          Length = 1527

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|221044154|dbj|BAH13754.1| unnamed protein product [Homo sapiens]
          Length = 1522

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|194221610|ref|XP_001917288.1| PREDICTED: similar to Topoisomerase (DNA) II beta binding protein
           [Equus caballus]
          Length = 1451

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|133778287|gb|AAI26210.2| Topoisomerase (DNA) II binding protein 1 [Homo sapiens]
          Length = 1435

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 28  SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 80


>gi|119599580|gb|EAW79174.1| topoisomerase (DNA) II binding protein 1, isoform CRA_b [Homo
           sapiens]
          Length = 1215

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|119599581|gb|EAW79175.1| topoisomerase (DNA) II binding protein 1, isoform CRA_c [Homo
           sapiens]
          Length = 1297

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|194440660|ref|NP_008958.2| DNA topoisomerase 2-binding protein 1 [Homo sapiens]
 gi|296453012|sp|Q92547|TOPB1_HUMAN RecName: Full=DNA topoisomerase 2-binding protein 1; AltName:
           Full=DNA topoisomerase II-beta-binding protein 1;
           Short=TopBP1; AltName: Full=DNA topoisomerase II-binding
           protein 1
 gi|119599579|gb|EAW79173.1| topoisomerase (DNA) II binding protein 1, isoform CRA_a [Homo
           sapiens]
          Length = 1522

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|116283817|gb|AAH32633.1| TOPBP1 protein [Homo sapiens]
          Length = 184

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|72390804|ref|XP_845696.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62176183|gb|AAX70300.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70802232|gb|AAZ12137.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 1792

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +     + LGA     ++++T I++ G     K   A+Q  + +++    L  L+ + 
Sbjct: 97  RQVTNLASSLGAKTQTRITKRTTILVAGRGLTRKRLVAEQQSIPVVS----LRWLESHG 151


>gi|168272940|dbj|BAG10309.1| DNA topoisomerase 2-binding protein 1 [synthetic construct]
          Length = 1522

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|3845613|dbj|BAA34202.1| DNA topoisomerase II binding protein [Homo sapiens]
 gi|153217453|gb|AAI51238.1| Topoisomerase (DNA) II binding protein 1 [Homo sapiens]
          Length = 1435

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 28  SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 80


>gi|1665785|dbj|BAA13389.1| KIAA0259 [Homo sapiens]
          Length = 1550

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 143 SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 195


>gi|301777398|ref|XP_002924119.1| PREDICTED: DNA topoisomerase 2-binding protein 1-like [Ailuropoda
           melanoleuca]
          Length = 1674

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 276 SLEKDKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 328


>gi|281343004|gb|EFB18588.1| hypothetical protein PANDA_013376 [Ailuropoda melanoleuca]
          Length = 1486

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 88  SLEKDKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPIL 140


>gi|307701087|ref|ZP_07638112.1| excinuclease ABC, C subunit [Mobiluncus mulieris FB024-16]
 gi|307614082|gb|EFN93326.1| excinuclease ABC, C subunit [Mobiluncus mulieris FB024-16]
          Length = 702

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           +    D S      +  K+R  ++ R +   GI  +G+   ++L K++ S +   +    
Sbjct: 615 LQYLRDESHRFAITAHRKKRGQAMTRSVLD-GIPGLGSVKQKALLKHFGSLRQIRRASAE 673

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            I+          +VP  G I+A  +V++ Q  
Sbjct: 674 DIS----------KVPGFGQILATQVVKYLQEN 696


>gi|301781354|ref|XP_002926092.1| PREDICTED: PAX-interacting protein 1-like [Ailuropoda melanoleuca]
          Length = 1365

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N  Q
Sbjct: 765 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLICREPTGLKYEKAKEWRIPCVN-AQ 822

Query: 714 FLF--LLQQYNTTLRIH 728
           +L   LL  +    ++H
Sbjct: 823 WLGDILLGNFEALRQVH 839


>gi|298675601|ref|YP_003727351.1| ERCC4 domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288589|gb|ADI74555.1| ERCC4 domain protein [Methanohalobium evestigatum Z-7303]
          Length = 759

 Score = 38.5 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD--IFTLQRRQQTSTTKI 524
           +Q+  L     +    +EG G         +      I +  D  +     R +  T  +
Sbjct: 609 EQVSNLSRMYKKPCLILEGDGMFSARQINPNAVYGTLISLELDFGVSIYYTRDEKDTASV 668

Query: 525 ENILGFGDVSVTNLYDSINKRRNISL-----ERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
             +L   +    N   S++ +++  L     E  + +  I  +G   ARSL KY+ S +N
Sbjct: 669 IRLLAKREQKDENRDVSMHGKKSAPLLSEQQEYVVSA--ISDIGPRAARSLLKYFGSVEN 726

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             +           ++  L    L+G   A  I E
Sbjct: 727 IMKA----------NYEELQEAELIGPKTASKIRE 751


>gi|309790483|ref|ZP_07685043.1| excinuclease ABC, C subunit [Oscillochloris trichoides DG6]
 gi|308227470|gb|EFO81138.1| excinuclease ABC, C subunit [Oscillochloris trichoides DG6]
          Length = 625

 Score = 38.5 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 3/110 (2%)

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD-SI 542
           E LG+  L+            R   D+   +R       +    LG         +  +I
Sbjct: 500 EALGQLNLEQIPVVGVAKGVDRNRFDLVCAEREDLIVLPRDSKALGLVQRIDEEAHRFAI 559

Query: 543 N-KRRNISLERFIFSLG-IRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              R+  S   F   L  I  +G +  ++L K + S     Q   + IA 
Sbjct: 560 TYHRKLRSKAAFASPLEEIPGIGPKRKKALLKAFGSLDGIRQATIDEIAA 609


>gi|195121496|ref|XP_002005256.1| GI20391 [Drosophila mojavensis]
 gi|193910324|gb|EDW09191.1| GI20391 [Drosophila mojavensis]
          Length = 880

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 647 IENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQ 702
           +  + LVF+G +    K+++ +A      LGA V + +S+    ++   N G+ K+  A+
Sbjct: 589 LRGQVLVFSGLVPTQMKLEQSRAYFIAKSLGAEVQSNISKDVTHLVA-VNAGTYKVNAAK 647

Query: 703 QL-GVKIMNEEQFLF 716
           +   +K++N      
Sbjct: 648 KEPNIKVVNANWLWA 662


>gi|171317539|ref|ZP_02906728.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gi|171097299|gb|EDT42145.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 1117

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 24/185 (12%)

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +  +L +F           D   +    E K+  T   + +      + +LR DG+   D
Sbjct: 210 SAAELTEFANACQDL----DPEHLAVFTELKVIRTSAELSW------FESLRRDGYYSWD 259

Query: 163 VS-ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAAS 221
            + A  +A  +I R+L L +P    VR   +  +     LN  + A+  + Y N      
Sbjct: 260 KTVANRQAKRSIARLLKLGVPRESTVRLIAFWHRCAPEDLNRSLTALAARGYDNGPEIFE 319

Query: 222 GILRRLNPTDITRYLNFFVHGLGKTS-------------EIFAKGQYEMLQKMRCLGFPV 268
            +   L      R  NF +  LG                +   K   E++  ++  G   
Sbjct: 320 ALGETLWRAHKARNWNFVIDTLGAHELPKMALFNHILERDTLPKTAEEVVNALKARGATH 379

Query: 269 NNGVR 273
               +
Sbjct: 380 EELAQ 384


>gi|195131369|ref|XP_002010123.1| GI15752 [Drosophila mojavensis]
 gi|193908573|gb|EDW07440.1| GI15752 [Drosophila mojavensis]
          Length = 1416

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-LSRKTDIIIVGDNPGSKLEKAQQ 703
             +    +V +     ++R        +LGAV++   + ++  ++I     GSK E A +
Sbjct: 723 EPLRGMTIVVS-IYAGLERDFINALAERLGAVLNKAFVKKERPLLICSSAEGSKYEGALK 781

Query: 704 LGVKIM 709
            G  ++
Sbjct: 782 WGYPVV 787


>gi|19114876|ref|NP_593964.1| BRCT domain protein [Schizosaccharomyces pombe 972h-]
 gi|3183403|sp|O14079|YEAE_SCHPO RecName: Full=Uncharacterized protein UNK4.14
 gi|3395560|emb|CAA20144.1| BRCT domain protein [Schizosaccharomyces pombe]
          Length = 520

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNP---GSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            + ++ + G  V   ++ +TD +I+G  P     K   A  LG+ +++ +     ++   
Sbjct: 296 MKSFIRRNGLRVQESVTDETDFVILGSPPLRRTHKFLLATSLGIPLVSSQYLTDCIKSGK 355

Query: 723 T 723
            
Sbjct: 356 V 356


>gi|320036898|gb|EFW18836.1| chitin biosynthesis protein Chs5 [Coccidioides posadasii str.
           Silveira]
          Length = 438

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 645 SEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +++    +  T G +    R   +  V ++GA +   +   T   +  +  G   EKA +
Sbjct: 166 TDLSGITV--TPGIMPPEMRTSLENAVERIGAKIVDSIQIDTTHFVCTEGRGPSWEKAVE 223

Query: 704 LGVKIM 709
           + + ++
Sbjct: 224 MNIPVV 229


>gi|303318497|ref|XP_003069248.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240108934|gb|EER27103.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 438

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 645 SEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +++    +  T G +    R   +  V ++GA +   +   T   +  +  G   EKA +
Sbjct: 166 TDLSGITV--TPGIMPPEMRTSLENAVERIGAKIVDSIQIDTTHFVCTEGRGPSWEKAVE 223

Query: 704 LGVKIM 709
           + + ++
Sbjct: 224 MNIPVV 229


>gi|119181318|ref|XP_001241880.1| hypothetical protein CIMG_05776 [Coccidioides immitis RS]
          Length = 438

 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 645 SEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +++    +  T G +    R   +  V ++GA +   +   T   +  +  G   EKA +
Sbjct: 166 TDLSGITV--TPGIMPPEMRTSLENAVERIGAKIVDSIQIDTTHFVCTEGRGPSWEKAVE 223

Query: 704 LGVKIM 709
           + + ++
Sbjct: 224 MNIPVV 229


>gi|297570375|ref|YP_003691719.1| helicase, RecD/TraA family [Desulfurivibrio alkaliphilus AHT2]
 gi|296926290|gb|ADH87100.1| helicase, RecD/TraA family [Desulfurivibrio alkaliphilus AHT2]
          Length = 822

 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 13/107 (12%)

Query: 521 TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL--SYQ 578
             +      FG     +    +      +LE+++ S  I+ VG + AR + +++   +  
Sbjct: 54  LGQWSEHPRFGRQFKADTALEVKPASAAALEKYLGSGLIKGVGPKTARKIVRHFGDQTLD 113

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            F QEI+ +             VP + +   ++I   +Q  R I  V
Sbjct: 114 IFEQEIDRL-----------TEVPGIAEAKLKSISAAWQEHRAIREV 149


>gi|85858024|ref|YP_460226.1| leucyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|123515751|sp|Q2LQK5|SYL_SYNAS RecName: Full=Leucyl-tRNA synthetase; AltName: Full=Leucine--tRNA
           ligase; Short=LeuRS
 gi|85721115|gb|ABC76058.1| leucyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 862

 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 16/125 (12%)

Query: 409 VIPKVVDIIVNERHPDAQPFSF-PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           V+P+ VD       P A+   F  + CP C     R+ +     + ++        C   
Sbjct: 457 VLPRDVDFSGEGGSPLAKHPEFLNTTCPSCGGPAKRESDTMDTFVESSWYFER-YCCP-- 513

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
                 HF  +      GL +QQ+D++   +     I   A +  L  R  T   +   +
Sbjct: 514 ------HFAEK-----PGLNRQQVDYWMPVDQYIGGIEH-AILHLLYARFYTRMLRDFGL 561

Query: 528 LGFGD 532
           +G  +
Sbjct: 562 VGVDE 566


>gi|195062453|ref|XP_001996195.1| GH22365 [Drosophila grimshawi]
 gi|193899690|gb|EDV98556.1| GH22365 [Drosophila grimshawi]
          Length = 992

 Score = 38.5 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKAQQLGVKIMNE 711
           K    + ++ + +LG      +   T  II  +       S+++KA++LG+ I+ E
Sbjct: 394 KDSEAEIKKRIGKLGGKFDTKILVDTIAIISTEKEVEKMSSRMKKAKELGIHIIPE 449


>gi|294101992|ref|YP_003553850.1| excinuclease ABC, C subunit [Aminobacterium colombiense DSM 12261]
 gi|293616972|gb|ADE57126.1| excinuclease ABC, C subunit [Aminobacterium colombiense DSM 12261]
          Length = 491

 Score = 38.5 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  VG  +A SL   + S +  A      +          ++V  +G ++A+ I  F++ 
Sbjct: 433 IPGVGKHMAASLLSSFGSVKKIAVLTPEEL----------MQVKGIGPVLAKNIAAFFRG 482

Query: 619 PRNICAVEA 627
             N    EA
Sbjct: 483 EDNESETEA 491


>gi|326922123|ref|XP_003207301.1| PREDICTED: DNA topoisomerase 2-binding protein 1-like [Meleagris
           gallopavo]
          Length = 1438

 Score = 38.5 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSK 697
            E           +  TG L    R + Q    + G   S  L       +IV +  G K
Sbjct: 190 MEDYTCPVFLGCTICVTG-LSSSDRKEVQRLTAEHGGQYSGQLKMNECTHLIVQEPKGQK 248

Query: 698 LEKAQQLGV 706
            E A++  V
Sbjct: 249 YECARKWNV 257


>gi|195040889|ref|XP_001991154.1| GH12221 [Drosophila grimshawi]
 gi|193900912|gb|EDV99778.1| GH12221 [Drosophila grimshawi]
          Length = 1390

 Score = 38.5 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-LSRKTDIIIVGDNPG 695
               +     +    +V +     ++R         LGA ++   + R+  +++     G
Sbjct: 698 PVPHRAQEEPLRGMTIVVS-IYAGLERDFINALAELLGAQLNKAFVKRERPLLVCSSAEG 756

Query: 696 SKLEKAQQLGVKIMNEEQFLF 716
           SK E A + G  +++ +  L 
Sbjct: 757 SKYEGALKWGYPVVHADWLLQ 777


>gi|193084204|gb|ACF09868.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
           II euryarchaeote KM3-136-D10]
          Length = 928

 Score = 38.5 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            + ++G   A+ L  ++ S +   Q           D   L +V  +G   A+AI+E  +
Sbjct: 878 SLPNIGPTTAKRLLDHFKSIEVLTQA----------DEAELCQVTGIGPTSARAILEVLR 927

Query: 618 N 618
           +
Sbjct: 928 D 928


>gi|301605826|ref|XP_002932542.1| PREDICTED: PAX-interacting protein 1-like [Xenopus (Silurana)
           tropicalis]
          Length = 1258

 Score = 38.5 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            TG +    R   +      GA  +  L R   +++  +  G K EKA++  +  +N
Sbjct: 904 VTGFVDS-DRDDLKLMAYLAGAKYTGYLCRSNTVLVCKEPSGLKYEKAKEWRIPCVN 959


>gi|270004381|gb|EFA00829.1| hypothetical protein TcasGA2_TC003717 [Tribolium castaneum]
          Length = 956

 Score = 38.5 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
              +     K  +  + N + V  G    + + + +  + +LG  V   +S     +   
Sbjct: 367 GEENAEPKVKREAPALYNMEFVILGQ-PDMGKEELKRRIVKLGGKVVTKISGTVMAVFAS 425

Query: 692 ----DNPGSKLEKAQQLGVKIMNEE 712
               +  G++++  Q+  + +++E+
Sbjct: 426 KADVEKMGARMKVVQEEKIHVVSED 450


>gi|212535658|ref|XP_002147985.1| poly(ADP)-ribose polymerase PARP, putative [Penicillium marneffei
           ATCC 18224]
 gi|210070384|gb|EEA24474.1| poly(ADP)-ribose polymerase PARP, putative [Penicillium marneffei
           ATCC 18224]
          Length = 666

 Score = 38.5 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 7/63 (11%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII----VGDNPGSKLEKA 701
             +   +  +GT   + +   ++ +   G   S  ++ +   ++       +  +K ++A
Sbjct: 4   PFKGSVIAVSGTFPSLNQDSLKQIIEGGGGTFSPKVNDECTHLVTTLKAATSSNTKFKQA 63

Query: 702 QQL 704
             L
Sbjct: 64  SAL 66


>gi|320037602|gb|EFW19539.1| rad4 [Coccidioides posadasii str. Silveira]
          Length = 818

 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 23/71 (32%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E+          +  TG      R+  Q  + + G      L++    +I     G K 
Sbjct: 100 EEEYKLPTFAGLSICLTGFEDLNFRNHLQRTIAKNGGEFRRDLTKSVTHLIARSAEGQKY 159

Query: 699 EKAQQLGVKIM 709
           +      +KI+
Sbjct: 160 KFGVLWNIKIV 170


>gi|325110078|ref|YP_004271146.1| hypothetical protein Plabr_3527 [Planctomyces brasiliensis DSM
           5305]
 gi|324970346|gb|ADY61124.1| hypothetical protein Plabr_3527 [Planctomyces brasiliensis DSM
           5305]
          Length = 548

 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 82/248 (33%), Gaps = 34/248 (13%)

Query: 217 RNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276
           R  A+G+L      D  R L+ +   L          QY  + +++    P+ +  ++A 
Sbjct: 239 REFAAGLL-----LDAPRLLDCYNASLA---------QYRDVYQLKTASHPMPDLEQEAG 284

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
                +  +      R  L    DG V  + +   +  L   A      I  +   +  S
Sbjct: 285 WIEVPLWGWQAGDWRRHPLYCRRDGTVLTLSD---RDSLSWTAE-----IDSQRPLESLS 336

Query: 337 TRLLDIDIQIGRTGILTPVARLEP----VNIGGALITNATLHNEDYI--KGLDASGKVMR 390
           T L   D  +   G + P A +      + +    +        D I  + +     +  
Sbjct: 337 TTL--ADW-MAAGGRIRPRALMTTLYMRLFVSDWFVHGIGGAKYDEITDEIIRRFFSLEP 393

Query: 391 GGRDIRVGD-RVLVKRAGEVIPK-VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
               +  G   + + R  E   + V ++    R+ +  P +  S    C+   VR L  +
Sbjct: 394 PKFQVATGTRWLPLARQPETTGQSVDEVQQELRYAEENPETALSQE-RCELAEVRKLLEE 452

Query: 449 TGKLVAAH 456
             KL+   
Sbjct: 453 KAKLIHDW 460


>gi|257869018|ref|ZP_05648671.1| cation-transporting ATPase [Enterococcus gallinarum EG2]
 gi|257803182|gb|EEV32004.1| cation-transporting ATPase [Enterococcus gallinarum EG2]
          Length = 856

 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           V  +  + +AK++         +   +     D++    + LV  +I   IV ++Q  + 
Sbjct: 45  VQIKTWQKIAKHFTDLLMIVLMVAAALKAVTGDYVESGIILLV--VIINGIVGYWQERKA 102

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA----QEYVTQLGAVV 677
             +++ L + +        + +   +  + +V  G L  ++           +   G VV
Sbjct: 103 EESLDGLKQMMGQEAVVIVEGLQQTVAAESIVQ-GDLVSLKAGDVVPADMRLIENHGLVV 161

Query: 678 SAIL-------SRKTDIII 689
              +        +KT+ +I
Sbjct: 162 EESILTGESEPVKKTEHVI 180


>gi|18978387|ref|NP_579744.1| Hef nuclease [Pyrococcus furiosus DSM 3638]
 gi|18894225|gb|AAL82139.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638]
          Length = 764

 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 14/93 (15%)

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            K E       V + +   ++         R I   G+ HV A +AR L K++ S +   
Sbjct: 675 AKREQEEREKPVRIRSEKKALTLAERQ---RLIVE-GLPHVSATLARRLLKHFGSVERVF 730

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
                           L++V  +G+ IA+ I  
Sbjct: 731 TA----------SVAELMKVEGIGEKIAKEIRR 753


>gi|303388502|ref|XP_003072485.1| Rad4-like protein [Encephalitozoon intestinalis ATCC 50506]
 gi|303301625|gb|ADM11125.1| Rad4-like protein [Encephalitozoon intestinalis ATCC 50506]
          Length = 553

 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
            NI  +   ++ +  +    +K   + +       +G            Y   LGA  + 
Sbjct: 66  WNIKIL--HVRWLYDTDENTKKYEMTPLSGSSFTISGV----TDDSLINYHCLLGASFTE 119

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            L+  TD +I       K E  ++ G+ ++ 
Sbjct: 120 NLTAWTDFLITNSQCNEKTEFCKKYGIPVVT 150


>gi|300088227|ref|YP_003758749.1| prepilin peptidase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527960|gb|ADJ26428.1| Prepilin peptidase [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 256

 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACS 465
           G VI   ++++ +    +    S PS CP CQ R+ V D+ P    L    RC     C 
Sbjct: 13  GTVIGSFLNVLADRLPQEQSVVSPPSRCPACQRRLTVIDMIPVISWLALRGRC---RTCE 69

Query: 466 AQQLERLKH 474
           A+   R+  
Sbjct: 70  AKIPARVFW 78


>gi|303314567|ref|XP_003067292.1| BRCA1 C Terminus (BRCT) domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240106960|gb|EER25147.1| BRCA1 C Terminus (BRCT) domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 818

 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 23/71 (32%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E+          +  TG      R+  Q  + + G      L++    +I     G K 
Sbjct: 100 EEEYKLPTFAGLSICLTGFEDLNFRNHLQRTIAKNGGEFRRDLTKSVTHLIARSAEGQKY 159

Query: 699 EKAQQLGVKIM 709
           +      +KI+
Sbjct: 160 KFGVLWNIKIV 170


>gi|154483291|ref|ZP_02025739.1| hypothetical protein EUBVEN_00992 [Eubacterium ventriosum ATCC
           27560]
 gi|149735801|gb|EDM51687.1| hypothetical protein EUBVEN_00992 [Eubacterium ventriosum ATCC
           27560]
          Length = 460

 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 44/92 (47%), Gaps = 15/92 (16%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVV-----SAILSRKTDIIIV-----GDNPGSKLE 699
           K    TG+    +  +  +++  LGA +     ++ ++  T+++I       DNP  +L 
Sbjct: 32  KGFTVTGS--DSRESEITKHLESLGATIYYGQKASNVAADTEVLIYTAAVKADNP--ELV 87

Query: 700 KAQQLGVKIMNEEQFL-FLLQQYNTTLRIHDD 730
            A ++ + ++   +FL  +++ Y+T + +   
Sbjct: 88  AATEMNIPLLTRAEFLGQIMKNYHTAIGVSGT 119


>gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21]
 gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21]
          Length = 928

 Score = 38.5 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 53/142 (37%), Gaps = 7/142 (4%)

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTKIENILGFGDVSVT 536
           +A +I G   ++ +            +  A + +  ++  +         ILG  +V   
Sbjct: 109 EADDIIGTLAKKAEQAGFEVFCMTPDKDYAQLVSDHIKIYKPARMGNGHEILGVKEVLEK 168

Query: 537 NLYDSINKRRNISLERFIFSL----GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
              + + +  +I L  +  ++    GI  VG + A+ L + + S +      + +     
Sbjct: 169 WEIERVEQVIDI-LGLWGDAVDNIPGIPGVGEKTAKKLIQDFGSVEGIIANSDQLKGKLK 227

Query: 593 DDWLSLIRVPLVGDIIAQAIVE 614
           ++  +     L+   +A  I++
Sbjct: 228 ENIETYAEQGLISKKLATIILD 249


>gi|171680434|ref|XP_001905162.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939844|emb|CAP65069.1| unnamed protein product [Podospora anserina S mat+]
          Length = 835

 Score = 38.5 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 647 IENKKLVFTGTLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGS-KLEKA 701
           +   ++  +G L +     R +  + +T  GA + + +S++   ++V  + PG+ KL  A
Sbjct: 485 LRGHQIALSGVLPQNTDIYRSEIGQQITSFGARLRSTVSKEVTHLVVNTSQPGTAKLNAA 544

Query: 702 Q 702
           +
Sbjct: 545 R 545


>gi|302660109|ref|XP_003021737.1| BRCT domain protein [Trichophyton verrucosum HKI 0517]
 gi|291185650|gb|EFE41119.1| BRCT domain protein [Trichophyton verrucosum HKI 0517]
          Length = 815

 Score = 38.5 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
                 +  TG+         +E V   GA     L++    +I     G+K + A Q G
Sbjct: 136 TFFGLSICITGS-------HLEETVCAHGAEFRRDLTKAVTHLIAFACEGNKYQFAIQWG 188

Query: 706 VKIMNEEQFLFLLQQ 720
           +K+++ +     +++
Sbjct: 189 IKVVSLKWLEDSIER 203


>gi|194755263|ref|XP_001959911.1| GF11801 [Drosophila ananassae]
 gi|190621209|gb|EDV36733.1| GF11801 [Drosophila ananassae]
          Length = 823

 Score = 38.5 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 653 VFTGTLQKIQRHK-AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           V TG   +  R +  +  + ++GA ++  L+R T  ++  D   S  +KA +  + +++
Sbjct: 199 VRTG---QDNRSEGVKTIIGKMGAQINDRLTRNTTHVVFKDGLLSTYKKASEWNIPVVS 254


>gi|38258795|sp|Q8G1L5|UVRC_BRUSU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|23347500|gb|AAN29628.1| excinuclease ABC, C subunit [Brucella suis 1330]
          Length = 611

 Score = 38.5 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 422 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 477

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A      G++   FF + + P         ++ 
Sbjct: 478 AVRQILGEMGISDLVTAIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 529

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 530 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 574

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 575 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 610


>gi|296269970|ref|YP_003652602.1| excinuclease ABC subunit C [Thermobispora bispora DSM 43833]
 gi|296092757|gb|ADG88709.1| excinuclease ABC, C subunit [Thermobispora bispora DSM 43833]
          Length = 644

 Score = 38.5 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           GI  +G    ++L +++ S +         I            VP +G   A+AIV
Sbjct: 591 GIPGLGPARRQALLRHFGSLKRLRDATEEEIRA----------VPGIGPATAEAIV 636


>gi|256369133|ref|YP_003106641.1| excinuclease ABC subunit C [Brucella microti CCM 4915]
 gi|255999293|gb|ACU47692.1| excinuclease ABC subunit C [Brucella microti CCM 4915]
          Length = 611

 Score = 38.5 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 422 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 477

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A      G++   FF + + P         ++ 
Sbjct: 478 AVRQILGEMGISDLVTAIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 529

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 530 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 574

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 575 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 610


>gi|255723994|ref|XP_002546926.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134817|gb|EER34371.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 876

 Score = 38.1 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           E +  K+  T       R    + +T +G   +  L+R+ D ++     G K + A
Sbjct: 336 EFQGLKISIT-NYSGDSRQYLGKLITIMGGYFTTTLTRENDYLVCAKASGKKFDAA 390


>gi|223997624|ref|XP_002288485.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975593|gb|EED93921.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 853

 Score = 38.1 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           +  TG +    R+     +  +GA  +  L+++   +I  D  G+K  KA + G+ +++
Sbjct: 549 VSLTGFVDS-SRYGIIWMLKAIGANYTDNLTKRNTHLICRDAEGAKYCKACEWGLNVVS 606


>gi|76800822|ref|YP_325830.1| Hef nuclease [Natronomonas pharaonis DSM 2160]
 gi|76556687|emb|CAI48259.1| probable nuclease domain protein/ probable ATP-dependent helicase
           [Natronomonas pharaonis DSM 2160]
          Length = 845

 Score = 38.1 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +  VG   AR+L +++ S +          A  + D  +L  V  VGD+ A+ I +
Sbjct: 790 VAEVGPVTARALLEHFGSVE----------AVMSADEEALQAVDGVGDVTAERIRD 835


>gi|149239815|ref|XP_001525783.1| hypothetical protein LELG_02341 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449906|gb|EDK44162.1| hypothetical protein LELG_02341 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 790

 Score = 38.1 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
              E      TG   K++R +  +YV  LG +    L      +IVG     K +
Sbjct: 5   QPFEGLTFCCTGVQNKLRR-EINKYVKALGGIQYDDLMTDVQYLIVGSRDTPKYQ 58


>gi|73990583|ref|XP_534266.2| PREDICTED: similar to DNA topoisomerase II binding protein 1 (DNA
           topoisomerase IIbeta-binding protein 1) (TopBP1) [Canis
           familiaris]
          Length = 1697

 Score = 38.1 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +YV  +G  V   L+     +I G+    K   A  L   I+
Sbjct: 294 SLEKDKREEVHKYVQMMGGRVYRDLNISVTHLIAGEVGSKKYLVAANLKKPIL 346


>gi|296228064|ref|XP_002759648.1| PREDICTED: DNA topoisomerase 2-binding protein 1 [Callithrix
           jacchus]
          Length = 1526

 Score = 38.1 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
                +  TG L  + R + Q+   + G      L       +IV +  G K E A++  
Sbjct: 200 FLGCIICVTG-LSGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECAKRWN 258

Query: 706 VKIMNEEQFLFLLQQY 721
           V  +  + F   +++ 
Sbjct: 259 VHCVTTQWFFDSVEKG 274


>gi|257052562|ref|YP_003130395.1| Hef nuclease [Halorhabdus utahensis DSM 12940]
 gi|256691325|gb|ACV11662.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
          Length = 833

 Score = 38.1 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 10/70 (14%)

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            + +  ++      I  VG  IAR+L +++ S Q        ++  N DD L    V  V
Sbjct: 766 SKTLPEQQAYVVASIADVGPVIARTLLEHFGSVQ-------AVMTANEDDLLD---VDGV 815

Query: 605 GDIIAQAIVE 614
           G++ A+ I E
Sbjct: 816 GEVTAERIRE 825


>gi|87302683|ref|ZP_01085494.1| excinuclease ABC subunit C [Synechococcus sp. WH 5701]
 gi|87282566|gb|EAQ74524.1| excinuclease ABC subunit C [Synechococcus sp. WH 5701]
          Length = 687

 Score = 38.1 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G +  R L  ++ S           IA            P VG  +AQ +  ++  
Sbjct: 612 IPGLGPKRVRDLLAHFRSIDAIQLASPEQIAAA----------PGVGPALAQQVWGYFHP 661

Query: 619 PRNICAVEALLKEVSPSIGRHEKNV 643
                A+E        ++GR    +
Sbjct: 662 GDPEQALEGESSGEPLAVGREATPL 686


>gi|291411644|ref|XP_002722098.1| PREDICTED: topoisomerase (DNA) II binding protein 1 [Oryctolagus
           cuniculus]
          Length = 1544

 Score = 38.1 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +L+K +R +  +Y   +G  V   L+     +I G+    K   A  L   I+
Sbjct: 115 SLEKDKRDEVHKYAQMMGGRVFRDLNISVTHLIAGEVGSKKYLVAANLKKPIL 167


>gi|306843659|ref|ZP_07476259.1| excinuclease ABC, C subunit [Brucella sp. BO1]
 gi|306275969|gb|EFM57678.1| excinuclease ABC, C subunit [Brucella sp. BO1]
          Length = 690

 Score = 38.1 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 501 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 556

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A      G++   FF + + P         ++ 
Sbjct: 557 AVRQILGEMGISDLVTAIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 608

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 609 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 653

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 654 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 689


>gi|306842035|ref|ZP_07474708.1| excinuclease ABC, C subunit [Brucella sp. BO2]
 gi|306287876|gb|EFM59296.1| excinuclease ABC, C subunit [Brucella sp. BO2]
          Length = 690

 Score = 38.1 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 501 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 556

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A      G++   FF + + P         ++ 
Sbjct: 557 AVRQILGEMGISDLVTAIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 608

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 609 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 653

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 654 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 689


>gi|75497050|sp|Q57E41|UVRC_BRUAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|62195793|gb|AAX74093.1| UvrC, excinuclease ABC, C subunit [Brucella abortus bv. 1 str.
           9-941]
          Length = 627

 Score = 38.1 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 71/226 (31%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 438 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVKNPDAFPAW--PDVILIDGGQGQVG 493

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A           + FF      F   +P     
Sbjct: 494 AVRQILGEMGISDLVTAIGIAKGVDREAGR---------ERFFMEGKQPF--TLPPRDPV 542

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   Q+         +G                    L+       I  +G    R+L  
Sbjct: 543 LYFIQRLRDEAHRFAIGTHRARRKKEIV------RNPLD------EIAGIGPTRKRALLH 590

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 591 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 626


>gi|294852061|ref|ZP_06792734.1| excinuclease ABC [Brucella sp. NVSL 07-0026]
 gi|294820650|gb|EFG37649.1| excinuclease ABC [Brucella sp. NVSL 07-0026]
          Length = 702

 Score = 38.1 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 513 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 568

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A      G++   FF + + P         ++ 
Sbjct: 569 AVRQILGEMGISDLVTAIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 620

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 621 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 665

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 666 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 701


>gi|209528273|ref|ZP_03276736.1| excinuclease ABC, C subunit [Arthrospira maxima CS-328]
 gi|209491293|gb|EDZ91685.1| excinuclease ABC, C subunit [Arthrospira maxima CS-328]
          Length = 624

 Score = 38.1 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G    + L  ++ S           +A           VP +G+ +A+ I +++ 
Sbjct: 572 DIPGLGHHRQKLLLGHFRSIDYIRMATPTQLA----------EVPGIGEKLARQIYDYFH 621


>gi|161486699|ref|NP_697713.2| excinuclease ABC subunit C [Brucella suis 1330]
          Length = 690

 Score = 38.1 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 501 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 556

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A      G++   FF + + P         ++ 
Sbjct: 557 AVRQILGEMGISDLVTAIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 608

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 609 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 653

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 654 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 689


>gi|161618668|ref|YP_001592555.1| excinuclease ABC subunit C [Brucella canis ATCC 23365]
 gi|260566723|ref|ZP_05837193.1| excinuclease ABC subunit C [Brucella suis bv. 4 str. 40]
 gi|161335479|gb|ABX61784.1| excinuclease ABC, C subunit [Brucella canis ATCC 23365]
 gi|260156241|gb|EEW91321.1| excinuclease ABC subunit C [Brucella suis bv. 4 str. 40]
          Length = 690

 Score = 38.1 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 501 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 556

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A      G++   FF + + P         ++ 
Sbjct: 557 AVRQILGEMGISDLVTAIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 608

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 609 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 653

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 654 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 689


>gi|256060824|ref|ZP_05450984.1| excinuclease ABC subunit C [Brucella neotomae 5K33]
 gi|261324816|ref|ZP_05964013.1| UvrABC system protein C [Brucella neotomae 5K33]
 gi|261300796|gb|EEY04293.1| UvrABC system protein C [Brucella neotomae 5K33]
          Length = 690

 Score = 38.1 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 76/226 (33%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 501 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 556

Query: 454 AAHRCTGGLACSAQQ-LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S    +  +   V R+A      G++   FF + + P         ++ 
Sbjct: 557 AVRQILGEMGISDLVTVIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 608

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 609 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 653

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 654 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 689


>gi|254704029|ref|ZP_05165857.1| excinuclease ABC subunit C [Brucella suis bv. 3 str. 686]
 gi|261754683|ref|ZP_05998392.1| UvrABC system protein C [Brucella suis bv. 3 str. 686]
 gi|261744436|gb|EEY32362.1| UvrABC system protein C [Brucella suis bv. 3 str. 686]
          Length = 690

 Score = 38.1 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 501 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 556

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A      G++   FF + + P         ++ 
Sbjct: 557 AVRQILGEMGISDLVTAIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 608

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 609 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 653

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 654 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 689


>gi|163842969|ref|YP_001627373.1| excinuclease ABC subunit C [Brucella suis ATCC 23445]
 gi|163673692|gb|ABY37803.1| excinuclease ABC, C subunit [Brucella suis ATCC 23445]
          Length = 690

 Score = 38.1 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 501 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 556

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A      G++   FF + + P         ++ 
Sbjct: 557 AVRQILGEMGISDLVTAIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 608

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 609 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 653

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 654 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 689


>gi|330805002|ref|XP_003290477.1| hypothetical protein DICPUDRAFT_98700 [Dictyostelium purpureum]
 gi|325079405|gb|EGC33007.1| hypothetical protein DICPUDRAFT_98700 [Dictyostelium purpureum]
          Length = 788

 Score = 38.1 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---NPG 695
             +  S+  EN   V   T+   ++ +  + + + G       ++ T +I          
Sbjct: 113 ENQLNSNIFENLGFVIDITINLKRKMELVKIIKKNGGKSCYSCTKATHLITTKQGYIEKT 172

Query: 696 SKLEKAQQLGVKIM 709
            K+++A  LG+ I+
Sbjct: 173 QKVQQALSLGIPIL 186


>gi|291449040|ref|ZP_06588430.1| LOW QUALITY PROTEIN: ATP-dependent DNA ligase [Streptomyces
           roseosporus NRRL 15998]
 gi|291351987|gb|EFE78891.1| LOW QUALITY PROTEIN: ATP-dependent DNA ligase [Streptomyces
           roseosporus NRRL 15998]
          Length = 282

 Score = 38.1 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                 E K DG    I Y  G  V    R    +G+ ++   R  P +   +  N+P  
Sbjct: 21  PPGMAYEAKWDGFR-AIVYRDGDEVEIGSR----TGKSLT---RYFPDLVDAVRDNLPPR 72

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
             + GE+ I+      L+ E ++    P A+ R      +R L       ++ F V  + 
Sbjct: 73  CVIDGEIVIAHEG--RLDFERLSERIHP-ADSR------VRMLAEQTPASFIAFDVLAVD 123

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            TS + +  Q E  + ++      +  V  A +   I          R      +DG+V 
Sbjct: 124 DTS-LLSTRQAERREVLKAALSGASAPVLLAPSTTDIE--IARQWFDRYE-GAGLDGVVA 179

Query: 305 KVDEFSLQ 312
           K  +   +
Sbjct: 180 KPLDLPYR 187


>gi|239992053|ref|ZP_04712717.1| ATP-dependent DNA ligase [Streptomyces roseosporus NRRL 11379]
          Length = 353

 Score = 38.1 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                 E K DG    I Y  G  V    R    +G+ ++   R  P +   +  N+P  
Sbjct: 21  PPGMAYEAKWDGFR-AIVYRDGDEVEIGSR----TGKSLT---RYFPDLVDAVRDNLPPR 72

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
             + GE+ I+      L+ E ++    P A+ R      +R L       ++ F V  + 
Sbjct: 73  CVIDGEIVIAHEG--RLDFERLSERIHP-ADSR------VRMLAEQTPASFIAFDVLAVD 123

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            TS + +  Q E  + ++      +  V  A +   I          R      +DG+V 
Sbjct: 124 DTS-LLSTRQAERREVLKAALSGASAPVLLAPSTTDIE--IARQWFDRYE-GAGLDGVVA 179

Query: 305 KVDEFSLQ 312
           K  +   +
Sbjct: 180 KPLDLPYR 187


>gi|194883854|ref|XP_001976012.1| GG22621 [Drosophila erecta]
 gi|190659199|gb|EDV56412.1| GG22621 [Drosophila erecta]
          Length = 813

 Score = 38.1 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 653 VFTGTLQKIQRHK-AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           V TG      R +  +  + ++GA V   L+R T  ++  D   S  +KA +  + +++
Sbjct: 196 VRTG---NDNRSEGVKTIIAKMGAQVKDRLTRSTTHVVFKDGLLSTYKKAAEWKIPVVS 251


>gi|325126076|gb|ADY85406.1| Methylenetetrahydrofolate dehydrogenase (NADP+) [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 295

 Score = 38.1 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 18/76 (23%)

Query: 666 AQEYVTQLGAVVSA----ILSRKTDIIIVGDNPGSKL------EKAQQLGVKIM------ 709
           A+E   +LG+ V +     +S K  +I +GD+P SK+       KA++LG+K +      
Sbjct: 23  ARELGEKLGSEVDSLKEHGVSPKLCVINIGDDPASKVYVASKKRKAEKLGIKQVVYQLPA 82

Query: 710 --NEEQFLFLLQQYNT 723
             +EE  L L+   N 
Sbjct: 83  DESEEDVLKLIDSLNA 98


>gi|148560017|ref|YP_001258680.1| excinuclease ABC subunit C [Brucella ovis ATCC 25840]
 gi|148371274|gb|ABQ61253.1| excinuclease ABC, C subunit [Brucella ovis ATCC 25840]
          Length = 690

 Score = 38.1 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 501 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 556

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A      G++   FF + + P         ++ 
Sbjct: 557 AVRQILGEMGISDLVTAIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 608

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 609 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 653

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 654 HFGT----------AKAVSRAAVEDLVQIDGISEAMARAIHDHFRD 689


>gi|254701482|ref|ZP_05163310.1| excinuclease ABC subunit C [Brucella suis bv. 5 str. 513]
 gi|261752025|ref|ZP_05995734.1| UvrABC system protein C [Brucella suis bv. 5 str. 513]
 gi|261741778|gb|EEY29704.1| UvrABC system protein C [Brucella suis bv. 5 str. 513]
          Length = 690

 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 501 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 556

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A      G++   FF + + P         ++ 
Sbjct: 557 AVRQILGEMGISDLVTAIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 608

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 609 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 653

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 654 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 689


>gi|116514374|ref|YP_813280.1| bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/
           5,10-methylene-tetrahydrofolate cyclohydrolase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122274894|sp|Q049N0|FOLD_LACDB RecName: Full=Bifunctional protein FolD; Includes: RecName:
           Full=Methylenetetrahydrofolate dehydrogenase; Includes:
           RecName: Full=Methenyltetrahydrofolate cyclohydrolase
 gi|116093689|gb|ABJ58842.1| methenyltetrahydrofolate cyclohydrolase /
           5,10-methylenetetrahydrofolate dehydrogenase (NADP+)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325685899|gb|EGD27965.1| bifunctional methylenetetrahydrofolate
           dehydrogenase/methylenetetrahydrofolate cyclohydrolase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 283

 Score = 38.1 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 18/76 (23%)

Query: 666 AQEYVTQLGAVVSA----ILSRKTDIIIVGDNPGSKL------EKAQQLGVKIM------ 709
           A+E   +LG+ V +     +S K  +I +GD+P SK+       KA++LG+K +      
Sbjct: 11  ARELGEKLGSEVDSLKEHGVSPKLCVINIGDDPASKVYVASKKRKAEKLGIKQVVYQLPA 70

Query: 710 --NEEQFLFLLQQYNT 723
             +EE  L L+   N 
Sbjct: 71  DESEEDVLKLIDSLNA 86


>gi|258563858|ref|XP_002582674.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237908181|gb|EEP82582.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 897

 Score = 38.1 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 647 IENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +E   +VF+G L     +Q      +    GA+++  +  +T  ++ G N  +K+ +A +
Sbjct: 548 LEAVVMVFSGVLPLGTDLQNADISLWAKSFGAIITNRIDSRTTHLVAGRNRTAKVREATR 607

Query: 704 L-GVKIMNEEQFLFLLQQYN 722
              +KI+  +  L  L Q+ 
Sbjct: 608 YSKIKIVTVQWLLDSLTQWK 627


>gi|38258822|sp|Q8YGA9|UVRC_BRUME RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|90111059|sp|Q2YN35|UVRC_BRUA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|82615689|emb|CAJ10676.1| Excinuclease ABC, C subunit, N-terminal:Helix-hairpin-helix
           motif:Excinuclease ABC, C subunit, C-terminal:UvrB/UvrC
           protein:H [Brucella melitensis biovar Abortus 2308]
          Length = 611

 Score = 38.1 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 71/226 (31%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 422 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVKNPDAFPAW--PDVILIDGGQGQVG 477

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A           + FF      F   +P     
Sbjct: 478 AVRQILGEMGISDLVTAIGIAKGVDREAGR---------ERFFMEGKQPF--TLPPRDPV 526

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   Q+         +G                    L+       I  +G    R+L  
Sbjct: 527 LYFIQRLRDEAHRFAIGTHRARRKKEIV------RNPLD------EIAGIGPTRKRALLH 574

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 575 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 610


>gi|182414624|ref|YP_001819690.1| phosphotransferase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177841838|gb|ACB76090.1| PHP domain protein [Opitutus terrae PB90-1]
          Length = 621

 Score = 38.1 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGD-VSVTNLYDSINKRRNISLERFIFS---LGIR 560
              AD+  L         K EN        S   + +S+       LER + +   L ++
Sbjct: 4   HEIADV--LNEIALLLELKGENPFKIRAYQSGARVIESLE---QPELERLLAANELLTVK 58

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +G  +A+ +A+ + +     + +  + A      + L+++P VG    + + E
Sbjct: 59  GIGEALAKKIAELHTT--GKLEFLEKLRATIAPGLVELLQIPGVGPKKIKVLHE 110


>gi|119183903|ref|XP_001242929.1| hypothetical protein CIMG_06825 [Coccidioides immitis RS]
          Length = 286

 Score = 38.1 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 10/75 (13%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL---EKAQQ--LG 705
            +   GT    Q  K +++V   G   S  ++     +I  +    K     +A +   G
Sbjct: 9   TVCIAGTF-GAQNDKIKQWVEVNGGTFSKKVTADVTHLIATEPAVRKNVPEVRAAKRIKG 67

Query: 706 VKIMN----EEQFLF 716
           +KI++    E+  L 
Sbjct: 68  IKIVSYEWLEDSLLS 82


>gi|295671060|ref|XP_002796077.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226284210|gb|EEH39776.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 829

 Score = 37.7 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 647 IENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +++  LVF+G L     +Q      +    GA +S  ++ +T  ++ G N  +K+ +A +
Sbjct: 621 LDSVVLVFSGVLPLGTDMQSADISMWAKSFGATISHKINLRTTHLVAGRNRTAKVREATR 680

Query: 704 L-GVKIMNEEQFLFLLQQYN 722
              V+I+  +  L  + Q+ 
Sbjct: 681 YPNVRIVTVQWLLDSITQWK 700


>gi|118469667|ref|YP_884973.1| hypothetical protein MSMEG_0563 [Mycobacterium smegmatis str. MC2
           155]
 gi|118170954|gb|ABK71850.1| hypothetical protein MSMEG_0563 [Mycobacterium smegmatis str. MC2
           155]
          Length = 251

 Score = 37.7 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 14/175 (8%)

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
           DE +A        P       +  L+P  + R      H LG+   +       +L ++ 
Sbjct: 13  DEQVAAVLSRAVGPIGLILDAVADLDPLGLRRR----THYLGEGDGVVGT----VLDRIA 64

Query: 263 C-LGFPVNNGVRQANTFH--GIVSYYNEMKSIRSTLPYDIDGLV-YKVDEFSLQKQLGER 318
           C L      G R          + ++        T+     G+     D   LQ  LG  
Sbjct: 65  CVLDCADIPGTRSWEGKDRAERIGWWVHGVGALDTVVVAFPGVFGVVADRLPLQDLLGFT 124

Query: 319 ARSPRW-MISHKFAEKQASTRLLDI-DIQIGRTGILTPVARLEPVNIGGALITNA 371
            ++     ++ ++      T++  +  +  GR    TP A+ E  +   +L+   
Sbjct: 125 NQALVLCAVAREYGVTDHDTQVRMLAAVLCGRDLAQTPQAQTEDESGDMSLVQRV 179


>gi|46205344|ref|ZP_00209813.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 70

 Score = 37.7 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R   +  V   G      ++R+T +++  D  +  +K   A++ GV ++ E  F  LL 
Sbjct: 4   TREAWERDVRAAGLSPWPYVTRRTRLLVAADPDSLSTKARTARRYGVPVVTEAAFERLLA 63


>gi|322696134|gb|EFY87931.1| putative NAD+ ADP-ribosyltransferase [Metarhizium acridum CQMa 102]
          Length = 686

 Score = 37.7 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLE 699
           ++ ++  +L F+G              T LGA V+  ++ +   ++  +        K+ 
Sbjct: 17  ANPLQAYRLAFSGKFPGYSHKDLNALFTSLGASVTPSVNGRNTHLVCDEKDFLKKAPKVR 76

Query: 700 KAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
            A+  GV ++   +++  + +  T +   +
Sbjct: 77  DAEAAGVSLVKP-EWVAEVAKLKTNMDPSN 105


>gi|262273133|ref|ZP_06050950.1| DNA gyrase subunit B [Grimontia hollisae CIP 101886]
 gi|262222889|gb|EEY74197.1| DNA gyrase subunit B [Grimontia hollisae CIP 101886]
          Length = 805

 Score = 37.7 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           P LS++ + +  D+R +I  +     K       +  E K D
Sbjct: 614 PRLSVDTLKSESDVRAWIDTLVAVLNKNSTGESQYRAEVKFD 655


>gi|209154360|gb|ACI33412.1| Bifunctional methylenetetrahydrofolate
           dehydrogenase/cyclohydrolase, mitochondrial precursor
           [Salmo salar]
 gi|209154846|gb|ACI33655.1| Bifunctional methylenetetrahydrofolate
           dehydrogenase/cyclohydrolase, mitochondrial precursor
           [Salmo salar]
          Length = 338

 Score = 37.7 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 17/91 (18%)

Query: 652 LVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS------KLEKAQQL 704
           +V +G  L +  R +A+  V Q   V +        +++VGD+  S      K   A  +
Sbjct: 31  VVISGRKLARQIREEARADVEQW--VSTGNRRPHLSVVLVGDHAASHSYVLNKTRAAADV 88

Query: 705 GVK--------IMNEEQFLFLLQQYNTTLRI 727
           G+          ++E++ + L+ + NT  R+
Sbjct: 89  GISSETILKPSCISEDELMDLIYKLNTDHRV 119


>gi|242781762|ref|XP_002479866.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218720013|gb|EED19432.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 822

 Score = 37.7 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 652 LVFTGTLQ---KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
           LVF+G L     +Q      +    GA +S  +  KT  ++ G N  +K+ +A +   +K
Sbjct: 522 LVFSGVLPLGTDLQNADISLWAKSFGATISPRIGSKTTHLVAGRNRTAKVREATRYPRIK 581

Query: 708 IMNEEQFLFLLQQYN 722
           I+  +  L  L Q+ 
Sbjct: 582 IVTTQWLLDSLTQWK 596


>gi|260434379|ref|ZP_05788349.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109]
 gi|260412253|gb|EEX05549.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109]
          Length = 661

 Score = 37.7 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  VG +  + L  ++ S           ++          + P VG  +A+ I +F+ 
Sbjct: 589 DIPGVGPKRVKDLLAHFHSIDAIQLASVETLS----------KAPGVGPALARDIHDFFH 638


>gi|75910493|ref|YP_324789.1| excinuclease ABC subunit C [Anabaena variabilis ATCC 29413]
 gi|119367626|sp|Q3M542|UVRC_ANAVT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|75704218|gb|ABA23894.1| Excinuclease ABC subunit C [Anabaena variabilis ATCC 29413]
          Length = 627

 Score = 37.7 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G    + L  ++ S     Q     IA           VP +G  +AQAI +++  
Sbjct: 575 IPGLGHHRQKQLLAHFRSVDYIRQATPAQIA----------EVPGIGPHLAQAIYDYFHP 624

Query: 619 PR 620
             
Sbjct: 625 SH 626


>gi|257438675|ref|ZP_05614430.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165]
 gi|257198904|gb|EEU97188.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165]
          Length = 615

 Score = 37.7 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 10/59 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           +  VG + A++L   + S     +   + + +           P VG  +AQ I +++ 
Sbjct: 566 VPGVGPKTAKALMTQFKSVGAVREATPDQLENT----------PGVGPQLAQTIYDYFH 614


>gi|317486843|ref|ZP_07945657.1| tetrahydrofolate dehydrogenase/cyclohydrolase [Bilophila
           wadsworthia 3_1_6]
 gi|316921908|gb|EFV43180.1| tetrahydrofolate dehydrogenase/cyclohydrolase [Bilophila
           wadsworthia 3_1_6]
          Length = 296

 Score = 37.7 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 20/81 (24%)

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS------KLEKAQQLGVKIM------- 709
           R + +    + G  V  +++     I+VG+NP S      K++ A  LG   +       
Sbjct: 19  RQEVEAIREKHG-TVPGLVT-----ILVGENPASISYVTLKVKTALSLGFHEIQDNQPAD 72

Query: 710 -NEEQFLFLLQQYNTTLRIHD 729
            +EE  L L+ +YN    IH 
Sbjct: 73  VSEEALLALIDKYNRDPSIHG 93


>gi|195027566|ref|XP_001986653.1| GH20404 [Drosophila grimshawi]
 gi|193902653|gb|EDW01520.1| GH20404 [Drosophila grimshawi]
          Length = 965

 Score = 37.7 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 653 VFTGTLQKIQRHK-AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           V TG+     R +  +  + +LGA V+  L R T  ++  D   S  ++A+   V I++
Sbjct: 104 VRTGS---DNRSEGVKTIIAKLGAKVNDRLLRNTTHVVFKDGLLSTYKRAKSWNVPIVS 159


>gi|196011639|ref|XP_002115683.1| hypothetical protein TRIADDRAFT_59627 [Trichoplax adhaerens]
 gi|190581971|gb|EDV22046.1| hypothetical protein TRIADDRAFT_59627 [Trichoplax adhaerens]
          Length = 503

 Score = 37.7 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSE----YDALKRRCDAIA 59
           +++I  E   IE  ++E+++L +++  + D   +    ++ ++E    +D L +    + 
Sbjct: 402 QEMIDAEKKLIENIKEEIATLTEQLKENSDAAVENGDEMLSEAEQQELHDRLSKENQELE 461

Query: 60  HAFPDLAR 67
               +L  
Sbjct: 462 LHLDELFT 469


>gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
 gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
          Length = 789

 Score = 37.7 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 68/208 (32%), Gaps = 30/208 (14%)

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD-SINKRR 546
           K+ +    K +D    +     I+  Q  +  +  K++   G     + +    S ++  
Sbjct: 120 KENIYLITKDKDLFQLVNDRVLIYDYQNEEIINRDKVKEKFGVYPEQIKDYLALSGDQSD 179

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           NI         G++ VG + A  L   + S  N  Q I +I     +  L          
Sbjct: 180 NIP--------GVKGVGVKTAEKLINEFGSLDNVYQNIESIQGKLKEKLLKGKD------ 225

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV-------FTGTLQ 659
                   F     N+  +E L      +  +  KN+    E K ++        T   +
Sbjct: 226 -----EAYFSLELVNLQYIENLEVYPPVNDDKGLKNILEHFELKTVIKRLFNEDIT---E 277

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDI 687
            I  ++  + V ++   +   + +K   
Sbjct: 278 TIDEYELVDIVCEIENKLVGFIDKKVVY 305


>gi|319762819|ref|YP_004126756.1| efflux transporter, rnd family, mfp subunit [Alicycliphilus
           denitrificans BC]
 gi|330824898|ref|YP_004388201.1| RND family efflux transporter MFP subunit [Alicycliphilus
           denitrificans K601]
 gi|317117380|gb|ADU99868.1| efflux transporter, RND family, MFP subunit [Alicycliphilus
           denitrificans BC]
 gi|329310270|gb|AEB84685.1| efflux transporter, RND family, MFP subunit [Alicycliphilus
           denitrificans K601]
          Length = 383

 Score = 37.7 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 348 RTGILTPVAR-LEPVNIGGALITNATLHN--EDYIKGLDASGKVMRGGRDIRVGDRVLVK 404
           R+G L PVA  L  V         A +      YI  +  +        D+ VGD V   
Sbjct: 30  RSGPLAPVAVTLGTVQSRAVAPALAGIGTVQARYIYKIGPTAAGRVQRLDVHVGDMV--- 86

Query: 405 RAGEVIPKVVDIIVNER 421
           RAG+V+ ++  + ++ER
Sbjct: 87  RAGQVLGEMDPVDLDER 103


>gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
 gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
          Length = 939

 Score = 37.7 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           GI  +G + A++L K Y S +N     + +     ++  +     L+   +A  I+ 
Sbjct: 194 GIPGIGEKTAKALIKQYGSVENIIANSHELKGKQRENVETYAEQGLISKKLATIILN 250


>gi|47227338|emb|CAF96887.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 324

 Score = 37.7 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 89/304 (29%), Gaps = 36/304 (11%)

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI----EGLGKQQLD 492
           C      +   +  +      C     C  Q   R  H ++R  F+I     GLG  +  
Sbjct: 25  CGHTFHHECLVRWFQTAPTKTCP---QCRKQVSTR--HIITRLYFDIGLEDSGLGDPESL 79

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                +  A       D +  +++      +   +      S+     +    +  S  R
Sbjct: 80  QNELDQMKAHFSSKERD-WREKQKVMDDLMETVELQRKDVDSLQKDIHAKE--KLCSALR 136

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
             + L  +H  A+ AR  A+         + ++ ++     +  S+I    VG    + +
Sbjct: 137 MTY-LESQHNDAQAAREEARRLRVKMKTFESLDVLLQGQRAEVESMITDMGVGQAAVEQL 195

Query: 613 VEFY----QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             +     +   N+        ++   + R     ++++    L  T       R   + 
Sbjct: 196 SIYCISLKKEYDNLKGSLKASNDMCEKLKREVLTSNNKVHKAVLEVT-----KTREDMKS 250

Query: 669 YVTQLGA--VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
             T LG        L +K + +             + L       E    L+ +    L 
Sbjct: 251 LQTDLGNAEKEIWSLKKKVEFLQ------------KTLSTPTRTNEALSRLVFESPAPLD 298

Query: 727 IHDD 730
           +   
Sbjct: 299 VKQP 302


>gi|218199481|gb|EEC81908.1| hypothetical protein OsI_25738 [Oryza sativa Indica Group]
          Length = 977

 Score = 37.7 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIV-----GDNPGSKLEKAQQLGVKIMNE 711
            + ++ +   GA  +A +++ +  +++      +N   +++KA++L + I+ E
Sbjct: 403 DEWKQKLKDAGANFNATVTKDSSCLVLCSELESENA--EVKKARRLKIPILRE 453


>gi|149248464|ref|XP_001528619.1| hypothetical protein LELG_01139 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448573|gb|EDK42961.1| hypothetical protein LELG_01139 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 976

 Score = 37.7 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
            R+   + +  LGA  +  L++  D +I     G K E
Sbjct: 381 SRNYLIKLIEYLGATFTKTLTKDNDFLICAKATGRKYE 418


>gi|237815150|ref|ZP_04594148.1| excinuclease ABC, C subunit [Brucella abortus str. 2308 A]
 gi|237789987|gb|EEP64197.1| excinuclease ABC, C subunit [Brucella abortus str. 2308 A]
          Length = 702

 Score = 37.7 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 71/226 (31%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 513 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVKNPDAFPAW--PDVILIDGGQGQVG 568

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A           + FF      F   +P     
Sbjct: 569 AVRQILGEMGISDLVTAIGIAKGVDREAGR---------ERFFMEGKQPF--TLPPRDPV 617

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   Q+         +G                    L+       I  +G    R+L  
Sbjct: 618 LYFIQRLRDEAHRFAIGTHRARRKKEIV------RNPLD------EIAGIGPTRKRALLH 665

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 666 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 701


>gi|195582561|ref|XP_002081095.1| GD25875 [Drosophila simulans]
 gi|194193104|gb|EDX06680.1| GD25875 [Drosophila simulans]
          Length = 822

 Score = 37.7 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF---TGTLQKIQRHK-AQEYVTQL 673
           N  ++   E  +  +     +   ++   +++  +     TG      R +  +  + ++
Sbjct: 155 NTFDVPLAEQSIITMEERNPQEPPSLPELLKDIVVYVEVRTG---NDNRSEGVKSIIAKM 211

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           GA V   L+R T  ++  D   S  ++A +  + +++
Sbjct: 212 GAQVKDRLTRTTTHVVFKDGLLSTYKRATEWNIPVVS 248


>gi|119174843|ref|XP_001239749.1| hypothetical protein CIMG_09370 [Coccidioides immitis RS]
          Length = 1535

 Score = 37.7 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 23/71 (32%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E+          +  TG      R+  Q  + + G      L++    +I     G K 
Sbjct: 817 EEEYKLPTFTGLSICLTGFEDLNFRNHLQRTIAKNGGEFRRDLTKSVTHLIARSAEGQKY 876

Query: 699 EKAQQLGVKIM 709
           +      +KI+
Sbjct: 877 KFGVLWNIKIV 887


>gi|291001899|ref|XP_002683516.1| TFIIF CTD phosphatase Fcp1 [Naegleria gruberi]
 gi|284097145|gb|EFC50772.1| TFIIF CTD phosphatase Fcp1 [Naegleria gruberi]
          Length = 592

 Score = 37.7 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKA---QEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
           ++     ++   +VF+G +   Q+ +     +  T LGA     ++     ++       
Sbjct: 424 KEKKKDILKGAHIVFSGVIPLKQQPETHIDWKIATDLGAKCYTDITPNMTHLVARQKGTE 483

Query: 697 KLEKAQQL-GVKIMNEEQFLFLLQ 719
           K++KA+ + GV +++       L+
Sbjct: 484 KVKKAENMPGVHVVDLSWLHACLK 507


>gi|225852219|ref|YP_002732452.1| excinuclease ABC subunit C [Brucella melitensis ATCC 23457]
 gi|256264273|ref|ZP_05466805.1| excinuclease ABC subunit C [Brucella melitensis bv. 2 str. 63/9]
 gi|225640584|gb|ACO00498.1| excinuclease ABC, C subunit [Brucella melitensis ATCC 23457]
 gi|263094533|gb|EEZ18342.1| excinuclease ABC subunit C [Brucella melitensis bv. 2 str. 63/9]
 gi|326408718|gb|ADZ65783.1| excinuclease ABC subunit C [Brucella melitensis M28]
 gi|326538442|gb|ADZ86657.1| excinuclease ABC, C subunit [Brucella melitensis M5-90]
          Length = 685

 Score = 37.7 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 71/226 (31%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 496 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVKNPDAFPAW--PDVILIDGGQGQVG 551

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A           + FF      F   +P     
Sbjct: 552 AVRQILGEMGISDLVTAIGIAKGVDREAGR---------ERFFMEGKQPF--TLPPRDPV 600

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   Q+         +G                    L+       I  +G    R+L  
Sbjct: 601 LYFIQRLRDEAHRFAIGTHRARRKKEIV------RNPLD------EIAGIGPTRKRALLH 648

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 649 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 684


>gi|78212893|ref|YP_381672.1| excinuclease ABC subunit C [Synechococcus sp. CC9605]
 gi|119367855|sp|Q3AJW5|UVRC_SYNSC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78197352|gb|ABB35117.1| excinuclease ABC, C subunit [Synechococcus sp. CC9605]
          Length = 661

 Score = 37.7 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  VG +  + L  ++ S            A       +L + P VG  +A+ I +F+ 
Sbjct: 589 DIPGVGPKRVKDLLAHFHSID----------AIQLASIETLSKAPGVGPALARDIHDFFH 638


>gi|256113234|ref|ZP_05454102.1| excinuclease ABC subunit C [Brucella melitensis bv. 3 str. Ether]
 gi|265994646|ref|ZP_06107203.1| UvrABC system protein C [Brucella melitensis bv. 3 str. Ether]
 gi|262765759|gb|EEZ11548.1| UvrABC system protein C [Brucella melitensis bv. 3 str. Ether]
          Length = 685

 Score = 37.7 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 71/226 (31%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 496 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVKNPDAFPAW--PDVILIDGGQGQVG 551

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A           + FF      F   +P     
Sbjct: 552 AVRQILGEMGISDLVTAIGIAKGVDREAGR---------ERFFMEGKQPF--TLPPRDPV 600

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   Q+         +G                    L+       I  +G    R+L  
Sbjct: 601 LYFIQRLRDEAHRFAIGTHRARRKKEIV------RNPLD------EIAGIGPTRKRALLH 648

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 649 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 684


>gi|172039272|ref|YP_001805773.1| hypothetical protein cce_4359 [Cyanothece sp. ATCC 51142]
 gi|171700726|gb|ACB53707.1| hypothetical protein cce_4359 [Cyanothece sp. ATCC 51142]
          Length = 335

 Score = 37.7 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 80/248 (32%), Gaps = 17/248 (6%)

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IPK+V   V ER      +          +        K G     +  TG  +C++ + 
Sbjct: 21  IPKIVRTSVYERDDYTCQYCQMKVDNHQLTIEHIMPVIKGGIDDIRNYITGCRSCNSSKK 80

Query: 470 ERLKH-FVSRDA-FNIEGL---GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524
           ++L   F+S+    NI+ L   G   +D   + ++    IR     F     ++    K 
Sbjct: 81  DKLLTDFLSKKLDINIKDLPIHGDIIIDTP-ELDEDYRHIRYNTYHF----MRKYDLFKG 135

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
              L   +        S    +       + +     +  ++   +        +F   I
Sbjct: 136 SRCLNKLEKLFRQNLWSTEYGK-------LLAKRYPELPGQVVAVIPLVEYIVSDFRVPI 188

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
             ++        +   +  +  I++    +++++  N    +   ++V   I +  K   
Sbjct: 189 YKLLVEFCKSAQTRALIDNIIRIVSNTNDDYFEDSINAIIFDKYDEKVQKKIQQAAKRAK 248

Query: 645 SEIENKKL 652
            +   K L
Sbjct: 249 VDFNKKTL 256


>gi|161611214|ref|YP_221454.2| excinuclease ABC subunit C [Brucella abortus bv. 1 str. 9-941]
 gi|162002877|ref|YP_414162.2| excinuclease ABC subunit C [Brucella melitensis biovar Abortus
           2308]
 gi|189023910|ref|YP_001934678.1| excinuclease ABC subunit C [Brucella abortus S19]
 gi|254688970|ref|ZP_05152224.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870]
 gi|254693452|ref|ZP_05155280.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya]
 gi|254697105|ref|ZP_05158933.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730000|ref|ZP_05188578.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292]
 gi|256257219|ref|ZP_05462755.1| excinuclease ABC subunit C [Brucella abortus bv. 9 str. C68]
 gi|260545588|ref|ZP_05821329.1| excinuclease ABC subunit C [Brucella abortus NCTC 8038]
 gi|260754460|ref|ZP_05866808.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870]
 gi|260757679|ref|ZP_05870027.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292]
 gi|260761506|ref|ZP_05873849.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883489|ref|ZP_05895103.1| UvrABC system protein C [Brucella abortus bv. 9 str. C68]
 gi|261213706|ref|ZP_05927987.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya]
 gi|297248068|ref|ZP_06931786.1| excinuclease ABC, C subunit [Brucella abortus bv. 5 str. B3196]
 gi|189019482|gb|ACD72204.1| excinuclease ABC subunit C [Brucella abortus S19]
 gi|260096995|gb|EEW80870.1| excinuclease ABC subunit C [Brucella abortus NCTC 8038]
 gi|260667997|gb|EEX54937.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292]
 gi|260671938|gb|EEX58759.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674568|gb|EEX61389.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870]
 gi|260873017|gb|EEX80086.1| UvrABC system protein C [Brucella abortus bv. 9 str. C68]
 gi|260915313|gb|EEX82174.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya]
 gi|297175237|gb|EFH34584.1| excinuclease ABC, C subunit [Brucella abortus bv. 5 str. B3196]
          Length = 690

 Score = 37.7 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 71/226 (31%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 501 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVKNPDAFPAW--PDVILIDGGQGQVG 556

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A           + FF      F   +P     
Sbjct: 557 AVRQILGEMGISDLVTAIGIAKGVDREAGR---------ERFFMEGKQPF--TLPPRDPV 605

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   Q+         +G                    L+       I  +G    R+L  
Sbjct: 606 LYFIQRLRDEAHRFAIGTHRARRKKEIV------RNPLD------EIAGIGPTRKRALLH 653

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 654 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 689


>gi|17987534|ref|NP_540168.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M]
 gi|256044391|ref|ZP_05447295.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563743|ref|ZP_05834229.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M]
 gi|265990810|ref|ZP_06103367.1| UvrABC system protein C [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983236|gb|AAL52432.1| excinuclease abc subunit c [Brucella melitensis bv. 1 str. 16M]
 gi|260153759|gb|EEW88851.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M]
 gi|263001594|gb|EEZ14169.1| UvrABC system protein C [Brucella melitensis bv. 1 str. Rev.1]
          Length = 685

 Score = 37.7 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 71/226 (31%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 496 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVKNPDAFPAW--PDVILIDGGQGQVG 551

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A           + FF      F   +P     
Sbjct: 552 AVRQILGEMGISDLVTAIGIAKGVDREAGR---------ERFFMEGKQPF--TLPPRDPV 600

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   Q+         +G                    L+       I  +G    R+L  
Sbjct: 601 LYFIQRLRDEAHRFAIGTHRARRKKEIV------RNPLD------EIAGIGPTRKRALLH 648

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 649 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 684


>gi|328769768|gb|EGF79811.1| hypothetical protein BATDEDRAFT_89222 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 875

 Score = 37.7 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%)

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           R         +GA  +  ++     ++     G+K  KA +  + I+N
Sbjct: 270 REDIATMAVHIGAQFTRSMTNSNTHLVCSSQTGTKYIKALEWNIHIVN 317


>gi|47208936|emb|CAF90803.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1200

 Score = 37.3 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 720 VTGFVDA-DRDDLKLMAYLTGARYTGYLCRSNTVLICKEPVGLKYEKAKEWKIPCVNAQW 778

Query: 714 FLFLL 718
              +L
Sbjct: 779 LCDVL 783


>gi|47198196|emb|CAF88514.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 163

 Score = 37.3 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG +    R   +      GA  +  L R   ++I  +  G K EKA++  +  +N + 
Sbjct: 50  VTGFVDA-DRDDLKLMAYLTGARYTGYLCRSNTVLICKEPVGLKYEKAKEWKIPCVNAQW 108

Query: 714 FLFLL 718
              +L
Sbjct: 109 LCDVL 113


>gi|150864118|ref|XP_001382822.2| regulator of Ty1 Transposition [Scheffersomyces stipitis CBS 6054]
 gi|149385374|gb|ABN64793.2| regulator of Ty1 Transposition [Scheffersomyces stipitis CBS 6054]
          Length = 846

 Score = 37.3 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 21/160 (13%)

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV-EFYQNPR--NICAVEA 627
           A  +   + F+  ++N+I  N            V   I +    EFY+     N   V  
Sbjct: 261 ASDHNLSERFSNSLDNLIKRNGGTVAKQFNSESVDVYIGKFRTGEFYEESCRSNRIIVGN 320

Query: 628 LLKEVSPSIGRHE--------------KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           L    S  +                  +      ++ K+  T       R      ++ L
Sbjct: 321 LQWFFSVIVSNEWVLPLNSNLLHYPIPQVPLDSFKDLKISIT-NYSGDSRAYLSTLISIL 379

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           G   +  L++    +I G   G K   A +   K ++E  
Sbjct: 380 GGTFTKTLTKDNHFLIAGSTEGKKFYTASK---KWLDENG 416


>gi|170572634|ref|XP_001892179.1| hypothetical protein [Brugia malayi]
 gi|158602689|gb|EDP39003.1| conserved hypothetical protein [Brugia malayi]
          Length = 305

 Score = 37.3 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++  +  +   +EA  +         + +       K +   G   + +R   +  +T +
Sbjct: 185 QWLNDVLSKKHLEAPWRVFHLPTFWTDNH--RPATGKIITING-FNENERCGVRMMITAI 241

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           GA  +  L+     ++   + G K+E+  ++G+ ++  +  + +
Sbjct: 242 GARYTPHLTSHNHFLVTKTSEGEKIERCHEMGISVVTYQWLVDI 285


>gi|170594189|ref|XP_001901846.1| Pax transcription activation domain interacting protein, putative
           [Brugia malayi]
 gi|158590790|gb|EDP29405.1| Pax transcription activation domain interacting protein, putative
           [Brugia malayi]
          Length = 626

 Score = 37.3 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++  +  +   +EA  +         + +       K +   G   + +R   +  +T +
Sbjct: 188 QWLNDVLSKKHLEAPWRVFHLPTFWTDNH--RPATGKIITING-FNENERCGVRMMITAI 244

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           GA  +  L+     ++   + G K+E+  ++G+ ++  +  + +
Sbjct: 245 GARYTPHLTSHNHFLVTKTSEGEKIERCHEMGISVVTYQWLVDI 288


>gi|116070556|ref|ZP_01467825.1| excinuclease ABC subunit C [Synechococcus sp. BL107]
 gi|116065961|gb|EAU71718.1| excinuclease ABC subunit C [Synechococcus sp. BL107]
          Length = 661

 Score = 37.3 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +GA+  R L  ++ S         + +A          + P VG ++AQ I  F+ 
Sbjct: 590 DIPGLGAKRVRDLLSHFHSIDAIQLASVDTLA----------KAPGVGPVLAQDIFNFFH 639


>gi|226308604|ref|YP_002768564.1| oxidoreductase [Rhodococcus erythropolis PR4]
 gi|226187721|dbj|BAH35825.1| putative oxidoreductase [Rhodococcus erythropolis PR4]
          Length = 264

 Score = 37.3 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 29/90 (32%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------- 694
           + +E K +V TG    I R  AQ      GA V          ++   +P          
Sbjct: 2   NRLEGKNVVITGAASGIGRAAAQLMA-AEGAKV----------LVADLDPARAEEAAAAM 50

Query: 695 ----GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               G+    A   GV +MNEE    ++++
Sbjct: 51  RETGGT----ALGFGVDVMNEESLATMIER 76


>gi|72390866|ref|XP_845727.1| heat shock 70 kDa protein [Trypanosoma brucei TREU927]
 gi|62176153|gb|AAX70270.1| heat shock 70 kDa protein, putative [Trypanosoma brucei]
 gi|70802263|gb|AAZ12168.1| heat shock 70 kDa protein, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 870

 Score = 37.3 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA-RSEDPNGPLN 76
            K +  L +++ +     + +      D E D L R    +  A  +L   +ED    L 
Sbjct: 582 EKRVRQLSEQLKFWQYMVHNFH-----DHE-DELLRTVRELEQALDELEGLAEDNTSGLT 635

Query: 77  KIGGEMNLSLFKVTH 91
             G     S+  V H
Sbjct: 636 TAGTVDFSSVTPVNH 650


>gi|261329145|emb|CBH12124.1| heat shock 70 kDa protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 870

 Score = 37.3 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA-RSEDPNGPLN 76
            K +  L +++ +     + +      D E D L R    +  A  +L   +ED    L 
Sbjct: 582 EKRVRQLSEQLKFWQYMVHNFH-----DHE-DELLRTVRELEQALDELEGLAEDNTSGLT 635

Query: 77  KIGGEMNLSLFKVTH 91
             G     S+  V H
Sbjct: 636 TAGTVDFSSVTPVNH 650


>gi|156553478|ref|XP_001600144.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 906

 Score = 37.3 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 17/139 (12%)

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
            ++ +  A+     Q  A +       +         +P+V   ++ ++   +    +  
Sbjct: 613 QKLTKRKAETSDITQVVADDEEEEEELDAPKIRKTKSIPVVTTRVSASVYGSFVKHNDND 672

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKL-VFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            V+                 S   E K++ V  G   ++ R    + + Q  A V    S
Sbjct: 673 EVQR---------------TSRLFEGKEICVINGD-SEMDRQVIVKLLQQHSAKVVQNAS 716

Query: 683 RKTDIIIVGDNPGSKLEKA 701
           + T  ++VGD    K + A
Sbjct: 717 KDTFCLLVGDPETLKAQNA 735


>gi|126305565|ref|XP_001375538.1| PREDICTED: similar to methylenetetrahydrofolate dehydrogenase
           (NADP+ dependent) 2, methenyltetrahydrofolate
           cyclohydrolase, [Monodelphis domestica]
          Length = 352

 Score = 37.3 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 647 IENKKLVFTG-TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS------KLE 699
           ++N+ +V +G  L +  R + +  V Q   V          +++VG+ P S      K +
Sbjct: 26  LQNEAVVISGRKLAQQIRQEVRHEVEQW--VALGNRRPHLSVVLVGEEPASHSYVLNKTK 83

Query: 700 KAQQLGV---KI-----MNEEQFLFLLQQYNT 723
            A  +G+    I     ++EE+ L L+ + N 
Sbjct: 84  AAADVGISSETILKPASISEEELLDLIGKLNE 115


>gi|158290570|ref|XP_312163.4| AGAP002760-PA [Anopheles gambiae str. PEST]
 gi|157017959|gb|EAA07850.4| AGAP002760-PA [Anopheles gambiae str. PEST]
          Length = 1387

 Score = 37.3 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 5/98 (5%)

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +  A+  +            E   +    +   G  EK          +  TG L   ++
Sbjct: 111 EKAAECRLPIMHPDWVSAVWEESQRRDLHATEAGMVEKYRLPVFYALTITSTG-LSAAKK 169

Query: 664 HKAQEYVTQLGAVVSAIL-SRKTDIIIVGDNPGSKLEK 700
           ++ +  +   G        S  TDI+I+ +  G+   K
Sbjct: 170 NEIKALIESHGGNYVGSFKSETTDILIL-EKTGTDSAK 206


>gi|302381054|ref|ZP_07269514.1| excinuclease ABC, C subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302311101|gb|EFK93122.1| excinuclease ABC, C subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 608

 Score = 37.3 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G +  ++L K++ +     +               L  V  + +  A+ IV++++ 
Sbjct: 559 IALIGEKRKKALMKHFKTLDRIKKA----------SVEELCEVDGMNEKAAENIVDYFKQ 608


>gi|111219386|ref|XP_001134480.1| calmodulin-binding protein [Dictyostelium discoideum AX4]
 gi|152032641|sp|Q9U7C9|NUCMR_DICDI RecName: Full=Nucleomorphin; AltName: Full=Calmodulin-binding
           protein A; AltName: Full=Calmodulin-binding protein
           CaM-BP38
 gi|48994794|gb|AAT48090.1| nucleomorphin B [Dictyostelium discoideum]
 gi|60473969|gb|EAL71906.1| calmodulin-binding protein [Dictyostelium discoideum AX4]
          Length = 756

 Score = 37.3 bits (85), Expect = 9.5,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---NPGSKLEK 700
           S+  EN   V   T+   ++ +  + + + G       ++ T +I           K+ +
Sbjct: 126 SNIFENLGFVIDITINLKRKMELVKIIKKNGGKSCYSCTKATHLITTKQGYLEKTQKVTQ 185

Query: 701 AQQLGVKIM 709
           A  LG+ I+
Sbjct: 186 AISLGIPIL 194


>gi|254718836|ref|ZP_05180647.1| excinuclease ABC subunit C [Brucella sp. 83/13]
 gi|265983820|ref|ZP_06096555.1| UvrABC system protein C [Brucella sp. 83/13]
 gi|306838757|ref|ZP_07471591.1| excinuclease ABC, C subunit [Brucella sp. NF 2653]
 gi|264662412|gb|EEZ32673.1| UvrABC system protein C [Brucella sp. 83/13]
 gi|306406159|gb|EFM62404.1| excinuclease ABC, C subunit [Brucella sp. NF 2653]
          Length = 690

 Score = 37.3 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 501 DITPGDDFGMMR--EVIERRFSRLVKEHGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 556

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +          +   V R+A      G++   FF + + P         ++ 
Sbjct: 557 AVRQILGEMGIGDLVTAIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 608

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 609 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 653

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 654 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 689


>gi|302910096|ref|XP_003050216.1| hypothetical protein NECHADRAFT_49036 [Nectria haematococca mpVI
           77-13-4]
 gi|256731153|gb|EEU44503.1| hypothetical protein NECHADRAFT_49036 [Nectria haematococca mpVI
           77-13-4]
          Length = 728

 Score = 37.3 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 647 IENKKLVFTGTLQKIQRH--KAQEYVTQLGAVVSAILSRKTDIIIVGD---NPG-SKLEK 700
           ++   +  +G    I  +    +  + + G  V+  +++ T  ++  +   N G +K+  
Sbjct: 17  LDGCAIALSGKFDDIDHNHSSLETVIRKHGGTVTRSVTKATTHVVCTEYDFNAGTTKITA 76

Query: 701 AQQLGVKIMN 710
           A+   +  +N
Sbjct: 77  AKAKDLPCVN 86


>gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 872

 Score = 37.3 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 54/141 (38%), Gaps = 6/141 (4%)

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +A +I G   +  +            R    + + + + + S   I  +  F + +V   
Sbjct: 108 EADDIIGTISKLAEEKEMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEEFDEKAVLER 167

Query: 539 YDSINKRRNISLERFIFSL-----GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           Y+ I   + I L+  +        GI ++G + A  L K + + +N  Q ++ +     +
Sbjct: 168 YE-ITPHQFIDLKGLMGDKSDNIPGIPNIGEKTAIKLLKDFGTIENLLQNLSQLKGKIKE 226

Query: 594 DWLSLIRVPLVGDIIAQAIVE 614
           +  +   + ++   +A    +
Sbjct: 227 NIENNKELAIMSKKLATIKRD 247


>gi|254713824|ref|ZP_05175635.1| excinuclease ABC subunit C [Brucella ceti M644/93/1]
 gi|254717118|ref|ZP_05178929.1| excinuclease ABC subunit C [Brucella ceti M13/05/1]
 gi|261218933|ref|ZP_05933214.1| excinuclease ABC subunit C [Brucella ceti M13/05/1]
 gi|261321568|ref|ZP_05960765.1| UvrABC system protein C [Brucella ceti M644/93/1]
 gi|260924022|gb|EEX90590.1| excinuclease ABC subunit C [Brucella ceti M13/05/1]
 gi|261294258|gb|EEX97754.1| UvrABC system protein C [Brucella ceti M644/93/1]
          Length = 690

 Score = 37.3 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 38/226 (16%)

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DI  GD   + R  EVI +    +V E    A     P   P      V  ++   G++ 
Sbjct: 501 DITPGDDFGMMR--EVIERRFSRLVKEPGTPAGEVENPDAFPAW--PDVILIDGGQGQVG 556

Query: 454 AAHRCTGGLACSAQQLE-RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
           A  +  G +  S       +   V R+A      G++   FF + + P         ++ 
Sbjct: 557 AVRQILGEMGISDLVTAIGIAKGVDREA------GRE--RFFMEGKQPFTLPPRDPVLYF 608

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           +QR +  +                             L+       I  +G    R+L  
Sbjct: 609 IQRLRDEAHRFAIGTHRARRKKEMV---------RNPLD------EIAGIGPTRKRALLH 653

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 654 HFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 689


>gi|322785368|gb|EFZ12041.1| hypothetical protein SINV_00693 [Solenopsis invicta]
          Length = 759

 Score = 37.3 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 644 SSEIENKKLVFTG---TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
           S  ++   L F+G   T QK+ + +A +     GA V+  L+ KT  ++      +K   
Sbjct: 480 SQVLKGVCLTFSGLIPTHQKLHQSRAYKVARAFGAEVTQELTEKTTHLVAIRKGTAKANA 539

Query: 701 AQQLG-VKIMNEEQFL 715
           A++ G +KI+N +   
Sbjct: 540 AKKHGKIKIVNSDWLW 555


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.311    0.138    0.394 

Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,475,150,143
Number of Sequences: 14124377
Number of extensions: 619760196
Number of successful extensions: 1894301
Number of sequences better than 10.0: 4332
Number of HSP's better than 10.0 without gapping: 6599
Number of HSP's successfully gapped in prelim test: 1026
Number of HSP's that attempted gapping in prelim test: 1836695
Number of HSP's gapped (non-prelim): 9486
length of query: 731
length of database: 4,842,793,630
effective HSP length: 147
effective length of query: 584
effective length of database: 2,766,510,211
effective search space: 1615641963224
effective search space used: 1615641963224
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 85 (37.3 bits)